#ID	Chr	Ass1	Ass2	Strand	Mss1	Mss2	Type	Isoform	KorN	CLPDCA_1:Ratio	CLPDCA_1:Alt_average_sj	CLPDCA_1:Model_average_sj	CLPDCA_1:Alt_sj	CLPDCA_1:Model_sj	CLPDCA_1:isfiltered	CLPDCA_2:Ratio	CLPDCA_2:Alt_average_sj	CLPDCA_2:Model_average_sj	CLPDCA_2:Alt_sj	CLPDCA_2:Model_sj	CLPDCA_2:isfiltered	CLPDCA_3:Ratio	CLPDCA_3:Alt_average_sj	CLPDCA_3:Model_average_sj	CLPDCA_3:Alt_sj	CLPDCA_3:Model_sj	CLPDCA_3:isfiltered	CLPDCA_4:Ratio	CLPDCA_4:Alt_average_sj	CLPDCA_4:Model_average_sj	CLPDCA_4:Alt_sj	CLPDCA_4:Model_sj	CLPDCA_4:isfiltered	CLP_1:Ratio	CLP_1:Alt_average_sj	CLP_1:Model_average_sj	CLP_1:Alt_sj	CLP_1:Model_sj	CLP_1:isfiltered	CLP_2:Ratio	CLP_2:Alt_average_sj	CLP_2:Model_average_sj	CLP_2:Alt_sj	CLP_2:Model_sj	CLP_2:isfiltered	CLP_3:Ratio	CLP_3:Alt_average_sj	CLP_3:Model_average_sj	CLP_3:Alt_sj	CLP_3:Model_sj	CLP_3:isfiltered	CLP_4:Ratio	CLP_4:Alt_average_sj	CLP_4:Model_average_sj	CLP_4:Alt_sj	CLP_4:Model_sj	CLP_4:isfiltered	Sham_1:Ratio	Sham_1:Alt_average_sj	Sham_1:Model_average_sj	Sham_1:Alt_sj	Sham_1:Model_sj	Sham_1:isfiltered	Sham_2:Ratio	Sham_2:Alt_average_sj	Sham_2:Model_average_sj	Sham_2:Alt_sj	Sham_2:Model_sj	Sham_2:isfiltered	Sham_3:Ratio	Sham_3:Alt_average_sj	Sham_3:Model_average_sj	Sham_3:Alt_sj	Sham_3:Model_sj	Sham_3:isfiltered	Sham_4:Ratio	Sham_4:Alt_average_sj	Sham_4:Model_average_sj	Sham_4:Alt_sj	Sham_4:Model_sj	Sham_4:isfiltered	Gene	Symbol	Chr	GeneType	Description
known_NIR_1	chr1	10012374	10012548	-	10012380	10012548	A3SS	ENSMUST00000182580.8	known	0.26	31	90	31	90	y	0.21	23	86	23	86	y	0.19	31	129	31	129	y	0.17	15	72	15	72	y	0.12	15	109	15	109	y	0.21	14	54	14	54	y	0.21	27	99	27	99	y	0.25	20	59	20	59	y	0.17	19	96	19	96	y	0.18	29	131	29	131	y	0.19	27	114	27	114	y	0.14	28	177	28	177	y	ENSMUSG00000098234.8	Snhg6	chr1	lncRNA	small nucleolar RNA host gene 6
known_NIR_2	chr1	10039156;10046924	10046812;10049041	-	10039156	10049041	cassetteExon	ENSMUST00000147000.9	known	0.40	2.0	3	3;1	3	n	0.78	3.5	1	7;0	1	n	1.00	2.5	0	3;2	0	n	0.69	4.5	2	6;3	2	y	1.00	0.5	0	1;0	0	n	1.00	0.5	0	1;0	0	n	0.50	2.0	2	3;1	2	n	0.56	2.5	2	3;2	2	n	1.00	3.0	0	3;3	0	n	0.60	1.5	1	2;1	1	n	0.50	2.0	2	2;2	2	n	0.73	11.0	4	9;13	4	y	ENSMUSG00000025916.11	Ppp1r42	chr1	protein_coding	protein phosphatase 1, regulatory subunit 42
known_NIR_3	chr1	10039156;10046971	10046812;10049041	-	10039156	10049041	cassetteExon	ENSMUST00000147000.9	known	0.33	1.5	3	3;0	3	n	0.78	3.5	1	7;0	1	n	1.00	1.5	0	3;0	0	n	0.64	3.5	2	6;1	2	n	1.00	0.5	0	1;0	0	n	1.00	1.0	0	1;1	0	n	0.50	2.0	2	3;1	2	n	0.43	1.5	2	3;0	2	n	1.00	1.5	0	3;0	0	n	0.71	2.5	1	2;3	1	n	0.33	1.0	2	2;0	2	n	0.60	6.0	4	9;3	4	y	ENSMUSG00000025916.11	Ppp1r42	chr1	protein_coding	protein phosphatase 1, regulatory subunit 42
known_NIR_4	chr1	10046971	10049041	-	10046924	10049041	A3SS	ENSMUST00000124874.8	known	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.25	1	3	1	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.75	3	1	3	1	n	0.00	0	2	0	2	n	0.19	3	13	3	13	y	ENSMUSG00000025916.11	Ppp1r42	chr1	protein_coding	protein phosphatase 1, regulatory subunit 42
known_NIR_5	chr1	10105388	10107887	-	10105388	10107895	A5SS	ENSMUST00000027050.10	known	0.01	2	187	2	187	y	0.02	3	120	3	120	y	0.01	3	251	3	251	y	0.02	4	182	4	182	y	0.03	7	214	7	214	y	0.03	4	118	4	118	y	0.02	4	197	4	197	y	0.01	1	110	1	110	n	0.01	1	170	1	170	n	0.02	5	259	5	259	y	0.01	1	190	1	190	n	0.03	7	242	7	242	y	ENSMUSG00000025917.10	Cops5	chr1	protein_coding	COP9 signalosome subunit 5
known_NIR_6	chr1	10105388	10108144	-	10105388	10107887	A5SS	ENSMUST00000186528.7	known	0.78	7	2	7	2	n	0.50	3	3	3	3	n	0.00	0	3	0	3	n	0.64	7	4	7	4	y	0.22	2	7	2	7	n	0.00	0	4	0	4	n	0.50	4	4	4	4	n	0.75	3	1	3	1	n	0.75	3	1	3	1	n	0.44	4	5	4	5	n	0.50	1	1	1	1	n	0.50	7	7	7	7	y	ENSMUSG00000025917.10	Cops5	chr1	protein_coding	COP9 signalosome subunit 5
known_NIR_7	chr1	10105388	10108144	-	10105388	10107895	A5SS	ENSMUST00000027050.10	known	0.04	7	187	7	187	y	0.02	3	120	3	120	y	0.00	0	251	0	251	n	0.04	7	182	7	182	y	0.01	2	214	2	214	y	0.00	0	118	0	118	n	0.02	4	197	4	197	y	0.03	3	110	3	110	y	0.02	3	170	3	170	y	0.02	4	259	4	259	y	0.01	1	190	1	190	n	0.03	7	242	7	242	y	ENSMUSG00000025917.10	Cops5	chr1	protein_coding	COP9 signalosome subunit 5
known_NIR_8	chr1	10110104	10115301	+	10108569	10115301	A5SS	ENSMUST00000071087.12	known	1.00	6	0	6	0	n	0.67	4	2	4	2	n	0.00	0	1	0	1	n	0.35	6	11	6	11	y	0.80	4	1	4	1	n	0.00	0	2	0	2	n	0.67	2	1	2	1	n	0.64	7	4	7	4	y	1.00	4	0	4	0	n	1.00	9	0	9	0	n	1.00	3	0	3	0	n	-	-	-	-	-	-	ENSMUSG00000056763.17	Cspp1	chr1	protein_coding	centrosome and spindle pole associated protein 1
known_NIR_9	chr1	10110112	10115301	+	10110104	10115301	A5SS	ENSMUST00000191521.7	known	0.14	1	6	1	6	n	0.20	1	4	1	4	n	1.00	2	0	2	0	n	0.14	1	6	1	6	n	0.20	1	4	1	4	n	1.00	2	0	2	0	n	0.33	1	2	1	2	n	0.30	3	7	3	7	y	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.25	1	3	1	3	n	1.00	3	0	3	0	n	ENSMUSG00000056763.17	Cspp1	chr1	protein_coding	centrosome and spindle pole associated protein 1
known_NIR_10	chr1	10153783	10158276	+	10153783	10155972	3pMXE	ENSMUST00000188249.7	known	0.20	1	4	1	4	n	0.00	0	5	0	5	n	0.15	2	11	2	11	y	0.00	0	14	0	14	n	0.00	0	21	0	21	n	0.00	0	7	0	7	n	0.00	0	18	0	18	n	0.13	2	13	2	13	y	0.07	1	13	1	13	n	0.10	1	9	1	9	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	ENSMUSG00000056763.17	Cspp1	chr1	protein_coding	centrosome and spindle pole associated protein 1
known_NIR_11	chr1	10153783	10158276	+	10153783;10156177	10155972;10158276	ES	ENSMUST00000071087.12	known	0.15	1	5.5	1	4;7	n	0.00	0	8.5	0	5;12	n	0.11	2	16.0	2	11;21	y	0.00	0	17.5	0	14;21	n	0.00	0	24.5	0	21;28	n	0.00	0	9.5	0	7;12	n	0.00	0	15.5	0	18;13	n	0.13	2	13.0	2	13;13	y	0.10	1	9.5	1	13;6	n	0.08	1	11.5	1	9;14	n	0.00	0	13.5	0	11;16	n	0.00	0	11.5	0	11;12	n	ENSMUSG00000056763.17	Cspp1	chr1	protein_coding	centrosome and spindle pole associated protein 1
known_NIR_12	chr1	10166238	10178594	+	10166238;10174589	10174437;10178594	ES	ENSMUST00000071087.12	known	0.17	4	19.0	4	20;18	y	0.36	6	10.5	6	11;10	y	0.06	1	16.0	1	10;22	n	0.45	11	13.5	11	14;13	y	0.06	2	30.5	2	28;33	y	0.22	3	10.5	3	10;11	y	0.12	2	15.0	2	14;16	y	0.27	6	16.5	6	14;19	y	0.29	4	10.0	4	7;13	y	0.08	1	12.0	1	9;15	n	0.31	5	11.0	5	9;13	y	0.05	1	19.5	1	19;20	n	ENSMUSG00000056763.17	Cspp1	chr1	protein_coding	centrosome and spindle pole associated protein 1
known_NIR_13	chr1	10166238	10178594	+	10174589	10178594	5pMXE	ENSMUST00000190625.2	known	0.18	4	18	4	18	y	0.38	6	10	6	10	y	0.04	1	22	1	22	n	0.46	11	13	11	13	y	0.06	2	33	2	33	y	0.21	3	11	3	11	y	0.11	2	16	2	16	y	0.24	6	19	6	19	y	0.24	4	13	4	13	y	0.06	1	15	1	15	n	0.28	5	13	5	13	y	0.05	1	20	1	20	n	ENSMUSG00000056763.17	Cspp1	chr1	protein_coding	centrosome and spindle pole associated protein 1
known_NIR_14	chr1	105212679	105284068	-	105212679;105282888	105282766;105284068	ES	ENSMUST00000058688.7	known	0.00	0	0.5	0	1;0	n	0.50	1	1.0	1	2;0	n	0.60	3	2.0	3	3;1	n	0.38	6	10.0	6	6;14	y	0.40	3	4.5	3	2;7	y	-	-	-	-	-	-	0.75	3	1.0	3	1;1	n	0.67	1	0.5	1	1;0	n	0.50	1	1.0	1	0;2	n	0.50	5	5.0	5	6;4	y	0.53	4	3.5	4	5;2	y	0.43	3	4.0	3	7;1	n	ENSMUSG00000047496.7	Rnf152	chr1	protein_coding	ring finger protein 152
known_NIR_15	chr1	105284682	105289314	+	105284974	105289314	A5SS	ENSMUST00000181383.3	known	0.50	3	3	3	3	n	0.31	5	11	5	11	y	0.00	0	2	0	2	n	0.89	8	1	8	1	n	0.60	6	4	6	4	y	0.40	2	3	2	3	n	0.45	10	12	10	12	y	0.80	4	1	4	1	n	0.64	7	4	7	4	y	0.48	11	12	11	12	y	0.50	5	5	5	5	y	0.67	4	2	4	2	n	ENSMUSG00000097482.3	Gm17634	chr1	lncRNA	predicted gene, 17634
known_NIR_16	chr1	105556325	105565235	-	105526852	105565235	A3SS	ENSMUST00000070699.15	known	-	-	-	-	-	-	0.00	0	3	0	3	n	0.15	2	11	2	11	y	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.11	1	8	1	8	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	ENSMUSG00000056536.15	Pign	chr1	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class N
known_NIR_17	chr1	105585575	105587018	-	105585575	105586612	5pMXE	ENSMUST00000070699.15	known	0.67	2	1	2	1	n	0.00	0	2	0	2	n	0.50	2	2	2	2	n	0.60	6	4	6	4	y	0.33	2	4	2	4	n	0.89	8	1	8	1	n	0.50	4	4	4	4	n	0.29	2	5	2	5	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	1.00	2	0	2	0	n	0.30	3	7	3	7	y	ENSMUSG00000056536.15	Pign	chr1	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class N
known_NIR_18	chr1	105585575	105587018	-	105585575;105586731	105586612;105587018	ES	ENSMUST00000186485.7	known	0.57	2	1.5	2	1;2	n	0.00	0	2.0	0	2;2	n	0.31	2	4.5	2	2;7	y	0.57	6	4.5	6	4;5	y	0.29	2	5.0	2	4;6	y	0.84	8	1.5	8	1;2	n	0.62	4	2.5	4	4;1	n	0.36	2	3.5	2	5;2	n	0.00	0	2.0	0	1;3	n	0.13	1	6.5	1	4;9	n	0.67	2	1.0	2	0;2	n	0.30	3	7.0	3	7;7	y	ENSMUSG00000056536.15	Pign	chr1	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class N
known_NIR_19	chr1	105585575	105587018	-	105586731	105587018	3pMXE	ENSMUST00000187909.2	known	0.50	2	2	2	2	n	0.00	0	2	0	2	n	0.22	2	7	2	7	n	0.55	6	5	6	5	y	0.25	2	6	2	6	n	0.80	8	2	8	2	y	0.80	4	1	4	1	n	0.50	2	2	2	2	n	0.00	0	3	0	3	n	0.10	1	9	1	9	n	0.50	2	2	2	2	n	0.30	3	7	3	7	y	ENSMUSG00000056536.15	Pign	chr1	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class N
known_NIR_20	chr1	105592358	105592699	+	105592358	105605888	A3SS	ENSMUST00000186807.7	known	0.46	6	7	6	7	y	0.11	1	8	1	8	n	0.18	2	9	2	9	y	0.17	2	10	2	10	y	0.24	4	13	4	13	y	0.00	0	5	0	5	n	0.10	1	9	1	9	n	0.17	2	10	2	10	y	0.41	7	10	7	10	y	0.43	3	4	3	4	n	0.27	4	11	4	11	y	0.18	2	9	2	9	y	ENSMUSG00000026319.14	Relch	chr1	protein_coding	RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing
known_NIR_21	chr1	105619834;105620028	105619937;105620609	+	105619834	105620609	cassetteExon	ENSMUST00000186807.7	known	1.00	6.0	0	6;6	0	n	1.00	5.0	0	6;4	0	n	0.93	13.5	1	16;11	1	n	0.90	9.5	1	13;6	1	n	1.00	12.0	0	9;15	0	n	1.00	2.0	0	1;3	0	n	0.81	8.5	2	7;10	2	y	1.00	6.5	0	6;7	0	n	0.71	5.0	2	3;7	2	y	1.00	8.5	0	7;10	0	n	0.89	8.5	1	7;10	1	n	0.94	16.0	1	19;13	1	n	ENSMUSG00000026319.14	Relch	chr1	protein_coding	RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing
known_NIR_22	chr1	105663747	105668738	+	105663747;105668242	105668160;105668738	ES	ENSMUST00000186807.7	known	0.80	12	3.0	12	6;0	n	0.45	5	6.0	5	12;0	n	0.33	6	12.0	6	15;9	y	0.56	9	7.0	9	13;1	n	0.67	12	6.0	12	6;6	y	0.20	1	4.0	1	6;2	n	0.21	3	11.0	3	17;5	y	0.25	4	12.0	4	18;6	y	0.40	3	4.5	3	9;0	n	0.50	9	9.0	9	16;2	y	0.50	4	4.0	4	6;2	y	0.39	7	11.0	7	18;4	y	ENSMUSG00000026319.14	Relch	chr1	protein_coding	RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing
known_NIR_23	chr1	105663747;105668820	105668738;105669022	+	105663747;105668242	105668160;105669022	MXE	ENSMUST00000039173.13	known	0.72	14.0	5.5	12;16	6;5	y	0.47	7.0	8.0	5;9	12;4	y	0.46	13.5	16.0	6;21	15;17	y	0.41	9.0	13.0	9;9	13;13	y	0.63	15.5	9.0	12;19	6;12	y	0.07	0.5	6.5	1;0	6;7	n	0.36	9.5	17.0	3;16	17;17	y	0.28	5.0	13.0	4;6	18;8	y	0.27	3.5	9.5	3;4	9;10	y	0.40	11.5	17.5	9;14	16;19	y	0.43	6.0	8.0	4;8	6;10	y	0.35	7.5	14.0	7;8	18;10	y	ENSMUSG00000026319.14	Relch	chr1	protein_coding	RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing
known_NIR_24	chr1	105668242	105669022	+	105668242;105668820	105668738;105669022	ES	ENSMUST00000186807.7	known	0.38	5	8.0	5	0;16	n	0.47	4	4.5	4	0;9	n	0.53	17	15.0	17	9;21	y	0.72	13	5.0	13	1;9	n	0.49	12	12.5	12	6;19	y	0.88	7	1.0	7	2;0	n	0.62	17	10.5	17	5;16	y	0.57	8	6.0	8	6;6	y	0.83	10	2.0	10	0;4	n	0.70	19	8.0	19	2;14	y	0.67	10	5.0	10	2;8	y	0.62	10	6.0	10	4;8	y	ENSMUSG00000026319.14	Relch	chr1	protein_coding	RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing
known_NIR_25	chr1	105931906	105939432	+	105931906;105933816	105933745;105939432	ES	ENSMUST00000118196.8	known	0.00	0	21.0	0	27;15	n	0.00	0	11.0	0	9;13	n	0.00	0	15.5	0	16;15	n	0.00	0	31.5	0	33;30	n	0.00	0	28.5	0	25;32	n	0.00	0	12.0	0	13;11	n	0.00	0	20.5	0	18;23	n	0.05	1	19.0	1	20;18	n	0.00	0	16.5	0	21;12	n	0.00	0	33.0	0	28;38	n	0.00	0	10.5	0	9;12	n	0.08	2	23.5	2	22;25	y	ENSMUSG00000038866.16	Zcchc2	chr1	protein_coding	zinc finger, CCHC domain containing 2
known_NIR_26	chr1	105943823	105947578	+	105943823;105946032	105945949;105947578	ES	ENSMUST00000118196.8	known	0.29	4	10.0	4	8;12	y	0.20	1	4.0	1	5;3	n	0.08	1	11.5	1	11;12	n	0.09	1	10.0	1	11;9	n	0.21	6	23.0	6	24;22	y	0.11	1	8.0	1	10;6	n	0.26	3	8.5	3	10;7	y	0.10	2	17.5	2	15;20	y	0.32	6	13.0	6	14;12	y	0.29	6	14.5	6	14;15	y	0.07	1	12.5	1	11;14	n	0.35	9	17.0	9	17;17	y	ENSMUSG00000038866.16	Zcchc2	chr1	protein_coding	zinc finger, CCHC domain containing 2
known_NIR_27	chr1	105951488	105955118	+	105951488	105955133	A3SS	ENSMUST00000118196.8	known	0.23	3	10	3	10	y	0.20	3	12	3	12	y	0.15	4	23	4	23	y	0.37	11	19	11	19	y	0.27	8	22	8	22	y	0.33	4	8	4	8	y	0.19	4	17	4	17	y	0.09	1	10	1	10	n	0.25	5	15	5	15	y	0.24	9	28	9	28	y	0.06	1	15	1	15	n	0.33	8	16	8	16	y	ENSMUSG00000038866.16	Zcchc2	chr1	protein_coding	zinc finger, CCHC domain containing 2
known_NIR_28	chr1	118228767	118232930	-	118228767;118232500	118232421;118232930	ES	ENSMUST00000027623.9	known	0.00	0	92.0	0	100;84	n	0.00	0	93.0	0	86;100	n	0.00	0	124.0	0	135;113	n	0.00	0	114.0	0	118;110	n	0.01	2	139.5	2	142;137	y	0.00	0	62.0	0	54;70	n	0.00	0	149.5	0	149;150	n	0.00	0	52.5	0	58;47	n	0.00	0	85.5	0	84;87	n	0.00	0	159.5	0	159;160	n	0.00	0	98.5	0	95;102	n	0.00	0	116.5	0	128;105	n	ENSMUSG00000026374.15	Tsn	chr1	protein_coding	translin
known_NIR_29	chr1	118228767	118232930	-	118232500	118232930	3pMXE	ENSMUST00000189768.7	known	0.00	0	84	0	84	n	0.00	0	100	0	100	n	0.00	0	113	0	113	n	0.00	0	110	0	110	n	0.01	2	137	2	137	y	0.00	0	70	0	70	n	0.00	0	150	0	150	n	0.00	0	47	0	47	n	0.00	0	87	0	87	n	0.00	0	160	0	160	n	0.00	0	102	0	102	n	0.00	0	105	0	105	n	ENSMUSG00000026374.15	Tsn	chr1	protein_coding	translin
known_NIR_30	chr1	118249727	118255355	+	118249727;118251455	118251312;118255355	ES	ENSMUST00000027626.13	known	0.02	1	50.0	1	64;36	n	0.00	0	40.5	0	44;37	n	0.00	0	88.5	0	94;83	n	0.00	0	61.5	0	71;52	n	0.00	0	67.0	0	71;63	n	0.00	0	40.5	0	48;33	n	0.00	0	57.0	0	68;46	n	0.00	0	49.5	0	40;59	n	0.00	0	43.5	0	46;41	n	0.00	0	67.5	0	69;66	n	0.00	0	55.0	0	46;64	n	0.03	2	65.5	2	65;66	y	ENSMUSG00000026377.13	Nifk	chr1	protein_coding	nucleolar protein interacting with the FHA domain of MKI67
known_NIR_31	chr1	118438106;118439952	118439905;118449557	+	118438106	118449557	cassetteExon	ENSMUST00000049404.13	known	0.33	2.5	5	3;2	5	y	-	-	-	-	-	-	0.00	0.0	10	0;0	10	n	0.00	0.0	8	0;0	8	n	0.04	0.5	12	1;0	12	n	0.33	1.5	3	1;2	3	n	0.21	3.0	11	3;3	11	y	0.00	0.0	6	0;0	6	n	0.00	0.0	9	0;0	9	n	0.23	3.0	10	5;1	10	n	0.27	1.5	4	2;1	4	n	0.06	0.5	8	0;1	8	n	ENSMUSG00000064302.14	Clasp1	chr1	protein_coding	CLIP associating protein 1
known_NIR_32	chr1	118467099	118470832	+	118467099	118469405	A3SS&ES	ENSMUST00000187713.7	known	1.00	7	0	7	0	n	1.00	3	0	3	0	n	1.00	12	0	12	0	n	1.00	8	0	8	0	n	1.00	21	0	21	0	n	1.00	4	0	4	0	n	0.88	15	2	15	2	y	1.00	10	0	10	0	n	1.00	5	0	5	0	n	1.00	9	0	9	0	n	1.00	5	0	5	0	n	1.00	12	0	12	0	n	ENSMUSG00000064302.14	Clasp1	chr1	protein_coding	CLIP associating protein 1
known_NIR_33	chr1	118467099;118469428	118469405;118470832	+	118467099	118470832	cassetteExon	ENSMUST00000049404.13	known	0.00	0.0	7	0;0	7	n	0.00	0.0	3	0;0	3	n	0.04	0.5	12	0;1	12	n	0.00	0.0	8	0;0	8	n	0.00	0.0	21	0;0	21	n	0.00	0.0	4	0;0	4	n	0.12	2.0	15	2;2	15	y	0.00	0.0	10	0;0	10	n	0.00	0.0	5	0;0	5	n	0.00	0.0	9	0;0	9	n	0.00	0.0	5	0;0	5	n	0.00	0.0	12	0;0	12	n	ENSMUSG00000064302.14	Clasp1	chr1	protein_coding	CLIP associating protein 1
known_NIR_34	chr1	119523789	119526735	-	119506807	119526735	A3SS	ENSMUST00000052404.13	known	1.00	110	0	110	0	n	0.97	57	2	57	2	y	0.99	104	1	104	1	n	1.00	102	0	102	0	n	1.00	132	0	132	0	n	1.00	42	0	42	0	n	0.99	108	1	108	1	n	1.00	60	0	60	0	n	1.00	74	0	74	0	n	0.98	121	2	121	2	y	1.00	98	0	98	0	n	0.99	151	1	151	1	n	ENSMUSG00000026383.15	Epb41l5	chr1	protein_coding	erythrocyte membrane protein band 4.1 like 5
known_NIR_35	chr1	119527991	119532958	-	119527967	119532958	A3SS	ENSMUST00000052404.13	known	0.03	2	60	2	60	y	0.00	0	65	0	65	n	0.03	2	78	2	78	y	0.02	1	61	1	61	n	0.00	0	108	0	108	n	0.02	1	41	1	41	n	0.03	3	86	3	86	y	0.00	0	42	0	42	n	0.04	2	51	2	51	y	0.03	4	114	4	114	y	0.00	0	81	0	81	n	0.01	1	117	1	117	n	ENSMUSG00000026383.15	Epb41l5	chr1	protein_coding	erythrocyte membrane protein band 4.1 like 5
known_NIR_36	chr1	119570388	119576084	-	119570388	119576147	A5SS	ENSMUST00000027632.14	known	0.17	5	25	5	25	y	0.18	2	9	2	9	y	0.32	7	15	7	15	y	0.06	1	15	1	15	n	0.14	6	37	6	37	y	0.05	1	19	1	19	n	0.23	7	23	7	23	y	0.27	4	11	4	11	y	0.17	5	24	5	24	y	0.09	2	20	2	20	y	0.29	7	17	7	17	y	0.18	6	28	6	28	y	ENSMUSG00000026383.15	Epb41l5	chr1	protein_coding	erythrocyte membrane protein band 4.1 like 5
known_NIR_37	chr1	119570388	119576084	-	119570388	119576515	A5SS	ENSMUST00000052404.13	known	0.42	5	7	5	7	y	0.13	2	13	2	13	y	0.23	7	23	7	23	y	0.03	1	32	1	32	n	0.14	6	36	6	36	y	0.05	1	19	1	19	n	0.23	7	24	7	24	y	0.22	4	14	4	14	y	0.25	5	15	5	15	y	0.06	2	31	2	31	y	0.21	7	26	7	26	y	0.12	6	43	6	43	y	ENSMUSG00000026383.15	Epb41l5	chr1	protein_coding	erythrocyte membrane protein band 4.1 like 5
known_NIR_38	chr1	119570388	119576147	-	119570388	119576515	A5SS	ENSMUST00000052404.13	known	0.78	25	7	25	7	y	0.41	9	13	9	13	y	0.39	15	23	15	23	y	0.32	15	32	15	32	y	0.51	37	36	37	36	y	0.50	19	19	19	19	y	0.49	23	24	23	24	y	0.44	11	14	11	14	y	0.62	24	15	24	15	y	0.39	20	31	20	31	y	0.40	17	26	17	26	y	0.39	28	43	28	43	y	ENSMUSG00000026383.15	Epb41l5	chr1	protein_coding	erythrocyte membrane protein band 4.1 like 5
known_NIR_39	chr1	119701001	119730053	-	119701001;119711319	119711212;119730053	ES	ENSMUST00000064091.12	known	0.00	0	3.5	0	2;5	n	0.00	0	0.5	0	1;0	n	0.12	1	7.0	1	7;7	n	0.00	0	1.0	0	0;2	n	0.00	0	7.0	0	9;5	n	0.25	1	3.0	1	2;4	n	0.29	2	5.0	2	3;7	y	0.00	0	1.0	0	1;1	n	0.00	0	1.5	0	1;2	n	0.00	0	2.0	0	3;1	n	0.00	0	1.5	0	2;1	n	0.00	0	0.5	0	0;1	n	ENSMUSG00000026384.14	Ptpn4	chr1	protein_coding	protein tyrosine phosphatase, non-receptor type 4
known_NIR_40	chr1	120044178	120047519	-	120044178	120047625	A5SS	ENSMUST00000027634.13	known	0.00	2	6266	2	6266	y	0.00	6	7442	6	7442	y	0.00	3	6825	3	6825	y	0.00	3	5985	3	5985	y	0.00	15	7393	15	7393	y	0.00	4	3232	4	3232	y	0.00	6	8940	6	8940	y	0.00	1	3975	1	3975	n	0.00	2	6450	2	6450	y	0.00	0	10523	0	10523	n	0.00	2	8633	2	8633	y	0.00	7	8049	7	8049	y	ENSMUSG00000026385.17	Dbi	chr1	protein_coding	diazepam binding inhibitor
known_NIR_41	chr1	120047742	120047851	-	120047742	120048675	A5SS	ENSMUST00000027634.13	known	0.01	52	4689	52	4689	y	0.02	105	5278	105	5278	y	0.02	133	5287	133	5287	y	0.02	74	4715	74	4715	y	0.02	105	5430	105	5430	y	0.02	40	2379	40	2379	y	0.02	124	6646	124	6646	y	0.02	77	3071	77	3071	y	0.01	62	4814	62	4814	y	0.01	95	7927	95	7927	y	0.02	97	6272	97	6272	y	0.01	82	6019	82	6019	y	ENSMUSG00000026385.17	Dbi	chr1	protein_coding	diazepam binding inhibitor
known_NIR_42	chr1	120047742	120048492	-	120047742	120047851	5pMXE	ENSMUST00000128408.8	known	0.05	3	52	3	52	y	0.03	3	105	3	105	y	0.04	5	133	5	133	y	0.05	4	74	4	74	y	0.07	8	105	8	105	y	0.17	8	40	8	40	y	0.07	9	124	9	124	y	0.05	4	77	4	77	y	0.10	7	62	7	62	y	0.10	11	95	11	95	y	0.08	9	97	9	97	y	0.04	3	82	3	82	y	ENSMUSG00000026385.17	Dbi	chr1	protein_coding	diazepam binding inhibitor
known_NIR_43	chr1	120047742	120048492	-	120047742	120048675	A5SS	ENSMUST00000027634.13	known	0.00	3	4689	3	4689	y	0.00	3	5278	3	5278	y	0.00	5	5287	5	5287	y	0.00	4	4715	4	4715	y	0.00	8	5430	8	5430	y	0.00	8	2379	8	2379	y	0.00	9	6646	9	6646	y	0.00	4	3071	4	3071	y	0.00	7	4814	7	4814	y	0.00	11	7927	11	7927	y	0.00	9	6272	9	6272	y	0.00	3	6019	3	6019	y	ENSMUSG00000026385.17	Dbi	chr1	protein_coding	diazepam binding inhibitor
known_NIR_44	chr1	120093902;120099212	120099131;120115771	+	120093902	120115771	cassetteExon	ENSMUST00000027637.13	known	0.76	6.5	2	4;9	2	y	0.57	4.0	3	6;2	3	y	1.00	2.0	0	1;3	0	n	1.00	1.0	0	2;0	0	n	0.73	5.5	2	5;6	2	y	1.00	2.0	0	2;2	0	n	-	-	-	-	-	-	0.20	0.5	2	1;0	2	n	0.50	1.0	1	0;2	1	n	0.75	3.0	1	4;2	1	n	0.00	0.0	1	0;0	1	n	1.00	1.0	0	2;0	0	n	ENSMUSG00000026388.16	3110009E18Rik	chr1	protein_coding	RIKEN cDNA 3110009E18 gene
known_NIR_45	chr1	120171997	120197713	-	120171997	120192962	5pMXE	ENSMUST00000140490.8	known	0.14	1	6	1	6	n	0.25	3	9	3	9	y	0.20	1	4	1	4	n	0.50	6	6	6	6	y	0.60	15	10	15	10	y	0.33	1	2	1	2	n	0.40	8	12	8	12	y	0.60	9	6	9	6	y	0.38	6	10	6	10	y	0.65	20	11	20	11	y	0.57	8	6	8	6	y	0.39	7	11	7	11	y	ENSMUSG00000026389.17	Steap3	chr1	protein_coding	STEAP family member 3
known_NIR_46	chr1	120171997	120197855	-	120171997	120192962	5pMXE	ENSMUST00000140490.8	known	0.68	13	6	13	6	y	0.40	6	9	6	9	y	0.33	2	4	2	4	n	0.76	19	6	19	6	y	0.70	23	10	23	10	y	0.67	4	2	4	2	n	0.48	11	12	11	12	y	0.65	11	6	11	6	y	0.52	11	10	11	10	y	0.66	21	11	21	11	y	0.50	6	6	6	6	y	0.42	8	11	8	11	y	ENSMUSG00000026389.17	Steap3	chr1	protein_coding	STEAP family member 3
known_NIR_47	chr1	120171997	120197855	-	120171997	120197713	A5SS	ENSMUST00000112641.8	known	0.93	13	1	13	1	n	0.67	6	3	6	3	n	0.67	2	1	2	1	n	0.76	19	6	19	6	y	0.61	23	15	23	15	y	0.80	4	1	4	1	n	0.58	11	8	11	8	y	0.55	11	9	11	9	y	0.65	11	6	11	6	y	0.51	21	20	21	20	y	0.43	6	8	6	8	y	0.53	8	7	8	7	y	ENSMUSG00000026389.17	Steap3	chr1	protein_coding	STEAP family member 3
known_NIR_48	chr1	120421384	120422470	-	120421384;120421991	120421773;120422470	ES	ENSMUST00000027639.8	known	0.02	2	101.0	2	86;116	y	0.00	0	68.0	0	61;75	n	0.03	6	221.5	6	165;278	y	0.00	0	12.0	0	8;16	n	0.02	3	147.0	3	103;191	y	0.03	3	110.0	3	87;133	y	0.01	1	75.5	1	67;84	n	0.00	0	88.5	0	76;101	n	0.00	0	20.5	0	16;25	n	0.07	1	12.5	1	5;20	n	0.00	0	31.0	0	21;41	n	0.00	0	11.0	0	12;10	n	ENSMUSG00000026390.8	Marco	chr1	protein_coding	macrophage receptor with collagenous structure
known_NIR_49	chr1	121234692	121247326	-	121234692	121234869	5pMXE	ENSMUST00000159528.2	known	0.01	2	290	2	290	y	0.00	0	197	0	197	n	0.00	2	590	2	590	y	0.01	3	295	3	295	y	0.00	2	539	2	539	y	0.01	10	690	10	690	y	0.01	5	702	5	702	y	0.00	0	455	0	455	n	0.00	0	290	0	290	n	0.01	2	337	2	337	y	0.00	0	328	0	328	n	0.01	5	357	5	357	y	ENSMUSG00000003721.15	Insig2	chr1	protein_coding	insulin induced gene 2
known_NIR_50	chr1	121234692;121247701	121247326;121255420	-	121234692;121240054	121234869;121255420	MXE	ENSMUST00000186915.2	known	0.05	7.0	145.0	2;12	290;0	n	0.02	2.5	98.5	0;5	197;0	n	0.07	22.5	295.0	2;43	590;0	n	0.11	18.0	148.5	3;33	295;2	y	0.07	20.0	269.5	2;38	539;0	n	0.04	13.5	345.0	10;17	690;0	n	0.07	26.0	351.0	5;47	702;0	n	0.05	12.5	227.5	0;25	455;0	n	0.08	12.0	145.0	0;24	290;0	n	0.14	26.5	168.5	2;51	337;0	n	0.09	16.5	164.5	0;33	328;1	n	0.10	21.0	179.0	5;37	357;1	n	ENSMUSG00000003721.15	Insig2	chr1	protein_coding	insulin induced gene 2
known_NIR_51	chr1	121240054	121247326	-	121234692	121247326	A3SS	ENSMUST00000162582.2	known	0.99	186	2	186	2	y	1.00	113	0	113	0	n	0.99	318	2	318	2	y	0.98	178	3	178	3	y	0.99	289	2	289	2	y	0.98	428	10	428	10	y	0.99	369	5	369	5	y	1.00	268	0	268	0	n	1.00	162	0	162	0	n	0.99	211	2	211	2	y	1.00	169	0	169	0	n	0.98	211	5	211	5	y	ENSMUSG00000003721.15	Insig2	chr1	protein_coding	insulin induced gene 2
known_NIR_52	chr1	121240054	121255420	-	121240054	121247326	A5SS&ES	ENSMUST00000071064.13	known	0.00	0	186	0	186	n	0.00	0	113	0	113	n	0.00	0	318	0	318	n	0.01	2	178	2	178	y	0.00	0	289	0	289	n	0.00	0	428	0	428	n	0.00	0	369	0	369	n	0.00	0	268	0	268	n	0.00	0	162	0	162	n	0.00	0	211	0	211	n	0.01	1	169	1	169	n	0.00	1	211	1	211	n	ENSMUSG00000003721.15	Insig2	chr1	protein_coding	insulin induced gene 2
known_NIR_53	chr1	121240054	121255420	-	121240054;121247701	121247326;121255420	ES	ENSMUST00000003818.14	known	0.00	0	99.0	0	186;12	n	0.00	0	59.0	0	113;5	n	0.00	0	180.5	0	318;43	n	0.02	2	105.5	2	178;33	y	0.00	0	163.5	0	289;38	n	0.00	0	222.5	0	428;17	n	0.00	0	208.0	0	369;47	n	0.00	0	146.5	0	268;25	n	0.00	0	93.0	0	162;24	n	0.00	0	131.0	0	211;51	n	0.01	1	101.0	1	169;33	n	0.01	1	124.0	1	211;37	n	ENSMUSG00000003721.15	Insig2	chr1	protein_coding	insulin induced gene 2
known_NIR_54	chr1	121240054	121255420	-	121247701	121255420	A3SS&ES	ENSMUST00000160688.2	known	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	43	0	43	n	0.06	2	33	2	33	y	0.00	0	38	0	38	n	0.00	0	17	0	17	n	0.00	0	47	0	47	n	0.00	0	25	0	25	n	0.00	0	24	0	24	n	0.00	0	51	0	51	n	0.03	1	33	1	33	n	0.03	1	37	1	37	n	ENSMUSG00000003721.15	Insig2	chr1	protein_coding	insulin induced gene 2
known_NIR_55	chr1	121247634	121260221	-	121247634	121255295	5pMXE	ENSMUST00000159125.2	known	1.00	11	0	11	0	n	0.56	5	4	5	4	n	0.83	44	9	44	9	y	0.82	18	4	18	4	y	0.82	28	6	28	6	y	0.90	77	9	77	9	y	0.89	55	7	55	7	y	0.82	28	6	28	6	y	0.71	12	5	12	5	y	0.76	13	4	13	4	y	0.87	26	4	26	4	y	0.71	12	5	12	5	y	ENSMUSG00000003721.15	Insig2	chr1	protein_coding	insulin induced gene 2
known_NIR_56	chr1	121247634	121260221	-	121247701	121260221	A3SS	ENSMUST00000071064.13	known	0.25	11	33	11	33	y	0.19	5	22	5	22	y	0.26	44	127	44	127	y	0.36	18	32	18	32	y	0.22	28	99	28	99	y	0.29	77	188	77	188	y	0.26	55	155	55	155	y	0.21	28	106	28	106	y	0.17	12	57	12	57	y	0.25	13	40	13	40	y	0.39	26	40	26	40	y	0.23	12	41	12	41	y	ENSMUSG00000003721.15	Insig2	chr1	protein_coding	insulin induced gene 2
known_NIR_57	chr1	121247701	121255295	-	121247634	121255295	A3SS	ENSMUST00000159125.2	known	1.00	7	0	7	0	n	0.64	7	4	7	4	y	0.78	31	9	31	9	y	0.75	12	4	12	4	y	0.70	14	6	14	6	y	0.50	9	9	9	9	y	0.77	23	7	23	7	y	0.71	15	6	15	6	y	0.69	11	5	11	5	y	0.83	20	4	20	4	y	0.79	15	4	15	4	y	0.78	18	5	18	5	y	ENSMUSG00000003721.15	Insig2	chr1	protein_coding	insulin induced gene 2
known_NIR_58	chr1	121247701	121255295	-	121247701	121255420	A5SS	ENSMUST00000003818.14	known	0.37	7	12	7	12	y	0.58	7	5	7	5	y	0.42	31	43	31	43	y	0.27	12	33	12	33	y	0.27	14	38	14	38	y	0.35	9	17	9	17	y	0.33	23	47	23	47	y	0.38	15	25	15	25	y	0.31	11	24	11	24	y	0.28	20	51	20	51	y	0.31	15	33	15	33	y	0.33	18	37	18	37	y	ENSMUSG00000003721.15	Insig2	chr1	protein_coding	insulin induced gene 2
known_NIR_59	chr1	121247701	121255295	-	121247701	121260221	A5SS	ENSMUST00000071064.13	known	0.17	7	33	7	33	y	0.24	7	22	7	22	y	0.20	31	127	31	127	y	0.27	12	32	12	32	y	0.12	14	99	14	99	y	0.05	9	188	9	188	y	0.13	23	155	23	155	y	0.12	15	106	15	106	y	0.16	11	57	11	57	y	0.33	20	40	20	40	y	0.27	15	40	15	40	y	0.31	18	41	18	41	y	ENSMUSG00000003721.15	Insig2	chr1	protein_coding	insulin induced gene 2
known_NIR_60	chr1	121247701	121260221	-	121247701	121255420	5pMXE	ENSMUST00000003818.14	known	0.73	33	12	33	12	y	0.81	22	5	22	5	y	0.75	127	43	127	43	y	0.49	32	33	32	33	y	0.72	99	38	99	38	y	0.92	188	17	188	17	y	0.77	155	47	155	47	y	0.81	106	25	106	25	y	0.70	57	24	57	24	y	0.44	40	51	40	51	y	0.55	40	33	40	33	y	0.53	41	37	41	37	y	ENSMUSG00000003721.15	Insig2	chr1	protein_coding	insulin induced gene 2
known_NIR_61	chr1	121369622	121371461	+	121369622	121373369	A3SS	ENSMUST00000036025.16	known	0.00	0	7	0	7	n	0.50	2	2	2	2	n	0.00	0	16	0	16	n	0.00	0	12	0	12	n	0.24	5	16	5	16	y	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.20	2	8	2	8	y	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	17	0	17	n	ENSMUSG00000026339.19	Ccdc93	chr1	protein_coding	coiled-coil domain containing 93
known_NIR_62	chr1	121376009	121377085	+	121376009	121383800	A3SS	ENSMUST00000036025.16	known	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.25	5	15	5	15	y	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.06	1	15	1	15	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	ENSMUSG00000026339.19	Ccdc93	chr1	protein_coding	coiled-coil domain containing 93
known_NIR_63	chr1	121389708	121389965	+	121389708	121389962	A3SS	ENSMUST00000036025.16	known	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.04	1	23	1	23	n	0.11	1	8	1	8	n	0.00	0	20	0	20	n	0.20	2	8	2	8	y	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.14	1	6	1	6	n	0.04	1	22	1	22	n	0.11	1	8	1	8	n	0.08	1	11	1	11	n	ENSMUSG00000026339.19	Ccdc93	chr1	protein_coding	coiled-coil domain containing 93
known_NIR_64	chr1	121493897	121495297	-	121493897	121495520	A5SS	ENSMUST00000001724.12	known	0.07	2	27	2	27	y	0.08	1	12	1	12	n	0.09	4	39	4	39	y	0.03	1	32	1	32	n	0.04	2	49	2	49	y	0.29	11	27	11	27	y	0.08	4	45	4	45	y	0.12	3	23	3	23	y	0.11	4	32	4	32	y	0.11	4	31	4	31	y	0.04	1	25	1	25	n	0.00	0	29	0	29	n	ENSMUSG00000001674.12	Ddx18	chr1	protein_coding	DEAD box helicase 18
known_NIR_65	chr1	125489021	125490012	+	125488554	125490012	A5SS	ENSMUST00000190037.7	known	0.98	50	1	50	1	n	0.94	30	2	30	2	y	0.88	129	17	129	17	y	0.86	66	11	66	11	y	0.92	91	8	91	8	y	0.89	65	8	65	8	y	0.90	81	9	81	9	y	0.92	56	5	56	5	y	0.86	30	5	30	5	y	0.90	90	10	90	10	y	0.94	47	3	47	3	y	0.95	74	4	74	4	y	ENSMUSG00000026342.11	Slc35f5	chr1	protein_coding	solute carrier family 35, member F5
known_NIR_66	chr1	125515192	125517576	+	125515192	125517548	A3SS	ENSMUST00000027580.11	known	0.05	8	140	8	140	y	0.04	5	124	5	124	y	0.03	10	301	10	301	y	0.07	9	126	9	126	y	0.03	6	187	6	187	y	0.04	6	161	6	161	y	0.06	12	183	12	183	y	0.06	7	112	7	112	y	0.00	0	91	0	91	n	0.03	5	155	5	155	y	0.07	8	101	8	101	y	0.05	9	169	9	169	y	ENSMUSG00000026342.11	Slc35f5	chr1	protein_coding	solute carrier family 35, member F5
known_NIR_67	chr1	127725456	127725578	+	127723054	127725578	A5SS	ENSMUST00000143513.2	known	0.10	1	9	1	9	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.08	2	24	2	24	y	0.22	5	18	5	18	y	0.05	1	20	1	20	n	0.17	3	15	3	15	y	0.05	1	19	1	19	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.00	0	10	0	10	n	0.16	3	16	3	16	y	ENSMUSG00000026349.15	Ccnt2	chr1	protein_coding	cyclin T2
known_NIR_68	chr1	127725933	127727127	+	127725623	127727127	A5SS	ENSMUST00000112570.2	known	0.67	8	4	8	4	y	0.33	2	4	2	4	n	0.42	8	11	8	11	y	0.17	3	15	3	15	y	0.39	11	17	11	17	y	0.22	2	7	2	7	n	0.62	13	8	13	8	y	0.50	7	7	7	7	y	0.33	4	8	4	8	y	0.40	8	12	8	12	y	0.12	1	7	1	7	n	0.29	7	17	7	17	y	ENSMUSG00000026349.15	Ccnt2	chr1	protein_coding	cyclin T2
known_NIR_69	chr1	127801892	127802981	+	127801892	127816893	A3SS	ENSMUST00000037649.6	known	0.00	0	20	0	20	n	0.19	3	13	3	13	y	0.00	0	57	0	57	n	0.00	0	33	0	33	n	0.00	0	39	0	39	n	0.09	2	20	2	20	y	0.05	2	40	2	40	y	0.00	0	21	0	21	n	0.00	0	25	0	25	n	0.03	1	30	1	30	n	0.00	0	19	0	19	n	0.00	0	30	0	30	n	ENSMUSG00000036104.13	Rab3gap1	chr1	protein_coding	RAB3 GTPase activating protein subunit 1
known_NIR_70	chr1	128081136;128090595	128090506;128095630	+	128081136	128095630	cassetteExon	ENSMUST00000191016.7	known	0.09	1.5	15	0;3	15	n	0.00	0.0	11	0;0	11	n	0.05	1.5	30	2;1	30	n	0.00	0.0	21	0;0	21	n	0.13	4.0	27	5;3	27	y	0.10	2.0	18	1;3	18	n	0.17	3.5	17	1;6	17	n	0.31	4.5	10	2;7	10	y	0.06	0.5	8	0;1	8	n	0.13	2.0	13	2;2	13	y	0.00	0.0	7	0;0	7	n	0.03	0.5	16	1;0	16	n	ENSMUSG00000056211.14	R3hdm1	chr1	protein_coding	R3H domain containing 1
known_NIR_71	chr1	128104693	128106620	+	128102969	128106620	A5SS	ENSMUST00000191016.7	known	0.19	5	21	5	21	y	0.17	2	10	2	10	y	0.08	2	23	2	23	y	0.23	3	10	3	10	y	0.14	5	30	5	30	y	0.44	7	9	7	9	y	0.05	1	19	1	19	n	0.05	1	18	1	18	n	0.14	2	12	2	12	y	0.22	5	18	5	18	y	0.00	0	8	0	8	n	0.14	4	24	4	24	y	ENSMUSG00000056211.14	R3hdm1	chr1	protein_coding	R3H domain containing 1
known_NIR_72	chr1	128109949	128114495	+	128109949;128112391	128112137;128114495	ES	ENSMUST00000187900.7	known	0.00	0	6.5	0	4;9	n	0.00	0	7.0	0	10;4	n	0.09	1	10.5	1	4;17	n	0.07	1	13.5	1	14;13	n	0.15	2	11.0	2	10;12	y	0.00	0	3.0	0	1;5	n	0.05	1	20.0	1	21;19	n	0.15	2	11.0	2	3;19	y	0.00	0	10.0	0	4;16	n	0.00	0	10.0	0	7;13	n	0.09	1	10.5	1	10;11	n	0.00	0	10.5	0	8;13	n	ENSMUSG00000056211.14	R3hdm1	chr1	protein_coding	R3H domain containing 1
known_NIR_73	chr1	128109949	128114495	+	128112391	128114495	A5SS	ENSMUST00000185471.2	known	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.06	1	17	1	17	n	0.07	1	13	1	13	n	0.14	2	12	2	12	y	0.00	0	5	0	5	n	0.05	1	19	1	19	n	0.10	2	19	2	19	y	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.08	1	11	1	11	n	0.00	0	13	0	13	n	ENSMUSG00000056211.14	R3hdm1	chr1	protein_coding	R3H domain containing 1
known_NIR_74	chr1	128114646	128121197	+	128114646;128118476	128118375;128121197	ES	ENSMUST00000036288.11	known	0.86	9	1.5	9	0;3	n	0.86	15	2.5	15	1;4	n	0.69	10	4.5	10	5;4	y	0.83	12	2.5	12	1;4	n	0.76	17	5.5	17	2;9	y	0.61	7	4.5	7	5;4	y	0.71	18	7.5	18	7;8	y	0.62	10	6.0	10	6;6	y	0.48	5	5.5	5	4;7	y	0.71	12	5.0	12	3;7	y	0.90	13	1.5	13	0;3	n	0.86	16	2.5	16	2;3	y	ENSMUSG00000056211.14	R3hdm1	chr1	protein_coding	R3H domain containing 1
known_NIR_75	chr1	130566970	130570710	-	130566970	130570671	A5SS	ENSMUST00000027657.14	known	0.04	85	2334	85	2334	y	0.03	80	2434	80	2434	y	0.05	230	4478	230	4478	y	0.03	87	2447	87	2447	y	0.05	225	4562	225	4562	y	0.05	142	2820	142	2820	y	0.04	163	3554	163	3554	y	0.04	129	2978	129	2978	y	0.03	62	1879	62	1879	y	0.03	99	3073	99	3073	y	0.03	64	1962	64	1962	y	0.03	73	2638	73	2638	y	ENSMUSG00000026405.15	C4bp	chr1	protein_coding	complement component 4 binding protein
known_NIR_76	chr1	130585051;130585216	130585200;130589185	-	130585051	130589185	cassetteExon	ENSMUST00000027657.14	known	0.03	58.5	1739	78;39	1739	y	0.04	54.5	1461	76;33	1461	y	0.04	172.0	3721	239;105	3721	y	0.04	96.5	2486	123;70	2486	y	0.04	162.5	4041	211;114	4041	y	0.03	83.5	2386	115;52	2386	y	0.04	106.0	2772	140;72	2772	y	0.04	109.0	2865	135;83	2865	y	0.03	52.0	1529	62;42	1529	y	0.02	57.5	2634	79;36	2634	y	0.03	45.0	1367	55;35	1367	y	0.03	74.5	2189	95;54	2189	y	ENSMUSG00000026405.15	C4bp	chr1	protein_coding	complement component 4 binding protein
known_NIR_77	chr1	130618885	130624754	-	130618885	130626416	A5SS	ENSMUST00000171479.8	known	0.27	3	8	3	8	y	0.27	3	8	3	8	y	0.35	8	15	8	15	y	0.36	4	7	4	7	y	0.22	2	7	2	7	n	0.75	6	2	6	2	n	0.44	8	10	8	10	y	0.40	4	6	4	6	y	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.75	3	1	3	1	n	0.27	3	8	3	8	y	ENSMUSG00000026409.15	Pfkfb2	chr1	protein_coding	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
known_NIR_78	chr1	130618885	130626416	-	130605647	130626416	A3SS	ENSMUST00000188520.2	known	1.00	8	0	8	0	n	1.00	8	0	8	0	n	1.00	15	0	15	0	n	1.00	7	0	7	0	n	1.00	7	0	7	0	n	1.00	2	0	2	0	n	0.83	10	2	10	2	y	1.00	6	0	6	0	n	0.67	2	1	2	1	n	1.00	11	0	11	0	n	1.00	1	0	1	0	n	1.00	8	0	8	0	n	ENSMUSG00000101904.2	Gm29427	chr1	protein_coding	predicted gene 29427
known_NIR_79	chr1	130618885	130626416	-	130618885;130625822	130624754;130626416	ES	ENSMUST00000066863.13	known	0.30	8	18.5	8	3;34	y	0.35	8	15.0	8	3;27	y	0.31	15	34.0	15	8;60	y	0.28	7	18.0	7	4;32	y	0.17	7	34.0	7	2;66	y	0.07	2	27.0	2	6;48	y	0.28	10	26.0	10	8;44	y	0.17	6	28.5	6	4;53	y	0.24	2	6.5	2	0;13	n	0.51	11	10.5	11	0;21	n	0.14	1	6.0	1	3;9	n	0.37	8	13.5	8	3;24	y	ENSMUSG00000026409.15	Pfkfb2	chr1	protein_coding	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
known_NIR_80	chr1	130618885	130626416	-	130625822	130626416	3pMXE	ENSMUST00000169659.8	known	0.19	8	34	8	34	y	0.23	8	27	8	27	y	0.20	15	60	15	60	y	0.18	7	32	7	32	y	0.10	7	66	7	66	y	0.04	2	48	2	48	y	0.19	10	44	10	44	y	0.10	6	53	6	53	y	0.13	2	13	2	13	y	0.34	11	21	11	21	y	0.10	1	9	1	9	n	0.25	8	24	8	24	y	ENSMUSG00000026409.15	Pfkfb2	chr1	protein_coding	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
known_NIR_81	chr1	130618885;130625822	130625643;130626416	-	130618885	130626416	cassetteExon	ENSMUST00000171479.8	known	0.68	17.0	8	0;34	8	n	0.63	13.5	8	0;27	8	n	0.67	30.0	15	0;60	15	n	0.70	16.0	7	0;32	7	n	0.82	33.0	7	0;66	7	n	0.92	24.0	2	0;48	2	n	0.69	22.5	10	1;44	10	n	0.82	28.0	6	3;53	6	y	0.76	6.5	2	0;13	2	n	0.49	10.5	11	0;21	11	n	0.82	4.5	1	0;9	1	n	0.61	12.5	8	1;24	8	n	ENSMUSG00000026409.15	Pfkfb2	chr1	protein_coding	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
known_NIR_82	chr1	130625822	130626416	-	130605647	130626416	A3SS	ENSMUST00000188520.2	known	1.00	34	0	34	0	n	1.00	27	0	27	0	n	1.00	60	0	60	0	n	1.00	32	0	32	0	n	1.00	66	0	66	0	n	1.00	48	0	48	0	n	0.96	44	2	44	2	y	1.00	53	0	53	0	n	0.93	13	1	13	1	n	1.00	21	0	21	0	n	1.00	9	0	9	0	n	1.00	24	0	24	0	n	ENSMUSG00000101904.2	Gm29427	chr1	protein_coding	predicted gene 29427
known_NIR_83	chr1	130630175	130634163	-	130630175;130633238	130633114;130634163	ES	ENSMUST00000188520.2	known	0.09	3	31.0	3	44;18	y	0.13	4	27.0	4	32;22	y	0.02	2	84.0	2	88;80	y	0.03	1	34.0	1	34;34	n	0.03	2	57.0	2	52;62	y	0.04	2	46.0	2	51;41	y	0.02	1	43.5	1	47;40	n	0.00	0	48.5	0	50;47	n	0.00	0	17.0	0	15;19	n	0.07	2	25.0	2	22;28	y	0.22	3	10.5	3	8;13	y	0.04	1	25.0	1	27;23	n	ENSMUSG00000101904.2	Gm29427	chr1	protein_coding	predicted gene 29427
known_NIR_84	chr1	130635938	130642193	-	130635938	130642203	A5SS	ENSMUST00000188520.2	known	0.00	0	36	0	36	n	0.03	1	36	1	36	n	0.08	5	54	5	54	y	0.04	1	22	1	22	n	0.07	4	53	4	53	y	0.01	1	68	1	68	n	0.13	4	27	4	27	y	0.09	4	43	4	43	y	0.00	0	12	0	12	n	0.00	0	18	0	18	n	0.00	0	6	0	6	n	0.07	2	25	2	25	y	ENSMUSG00000101904.2	Gm29427	chr1	protein_coding	predicted gene 29427
known_NIR_85	chr1	130642313	130644481	-	130642313	130643458	5pMXE	ENSMUST00000188520.2	known	0.10	3	28	3	28	y	0.00	0	17	0	17	n	0.25	4	12	4	12	y	0.07	1	14	1	14	n	0.18	7	31	7	31	y	0.09	3	29	3	29	y	0.18	4	18	4	18	y	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.17	3	15	3	15	y	0.00	0	5	0	5	n	0.07	1	13	1	13	n	ENSMUSG00000101904.2	Gm29427	chr1	protein_coding	predicted gene 29427
known_NIR_86	chr1	130642313	130646559	-	130642313	130643458	5pMXE	ENSMUST00000188520.2	known	0.00	0	28	0	28	n	0.00	0	17	0	17	n	0.20	3	12	3	12	y	0.00	0	14	0	14	n	0.00	0	31	0	31	n	0.03	1	29	1	29	n	0.05	1	18	1	18	n	0.18	2	9	2	9	y	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	ENSMUSG00000101904.2	Gm29427	chr1	protein_coding	predicted gene 29427
known_NIR_87	chr1	130659960	130668740	+	130659960;130665424	130665239;130668740	ES	ENSMUST00000039323.8	known	0.29	3	7.5	3	10;5	y	0.21	2	7.5	2	7;8	y	0.25	1	3.0	1	1;5	n	0.00	0	3.0	0	5;1	n	0.25	4	12.0	4	14;10	y	0.25	1	3.0	1	3;3	n	0.25	2	6.0	2	5;7	y	0.17	1	5.0	1	3;7	n	-	-	-	-	-	-	0.80	2	0.5	2	1;0	n	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	ENSMUSG00000042510.8	AA986860	chr1	protein_coding	expressed sequence AA986860
known_NIR_88	chr1	130754718	130762110	+	130754544	130762110	A5SS	ENSMUST00000027675.14	known	0.00	0	579	0	579	n	0.01	3	384	3	384	y	0.00	0	137	0	137	n	0.00	2	992	2	992	y	0.00	3	726	3	726	y	0.00	0	110	0	110	n	0.00	1	520	1	520	n	0.00	0	275	0	275	n	0.00	1	641	1	641	n	0.00	4	1113	4	1113	y	0.00	3	692	3	692	y	0.00	5	1060	5	1060	y	ENSMUSG00000026417.14	Pigr	chr1	protein_coding	polymeric immunoglobulin receptor
known_NIR_89	chr1	130756828	130762110	+	130754544	130762110	A5SS	ENSMUST00000027675.14	known	0.00	2	579	2	579	y	0.00	1	384	1	384	n	0.00	0	137	0	137	n	0.00	0	992	0	992	n	0.00	0	726	0	726	n	0.00	0	110	0	110	n	0.00	0	520	0	520	n	0.00	1	275	1	275	n	0.00	2	641	2	641	y	0.00	3	1113	3	1113	y	0.00	2	692	2	692	y	0.00	2	1060	2	1060	y	ENSMUSG00000026417.14	Pigr	chr1	protein_coding	polymeric immunoglobulin receptor
known_NIR_90	chr1	130986499	131000077	-	130986499	131025026	A5SS	ENSMUST00000016672.11	known	0.00	0	66	0	66	n	0.01	1	72	1	72	n	0.04	9	237	9	237	y	0.04	4	95	4	95	y	0.04	5	132	5	132	y	0.09	5	52	5	52	y	0.05	6	109	6	109	y	0.04	2	55	2	55	y	0.07	5	62	5	62	y	0.04	5	118	5	118	y	0.01	1	74	1	74	n	0.03	3	94	3	94	y	ENSMUSG00000016528.11	Mapkapk2	chr1	protein_coding	MAP kinase-activated protein kinase 2
known_NIR_91	chr1	131086036	131088200	+	131086036	131088147	A3SS	ENSMUST00000112446.9	known	0.04	3	70	3	70	y	0.02	1	58	1	58	n	0.02	2	92	2	92	y	0.00	0	66	0	66	n	0.01	1	112	1	112	n	0.00	0	59	0	59	n	0.00	0	76	0	76	n	0.00	0	47	0	47	n	0.00	0	54	0	54	n	0.00	0	101	0	101	n	0.04	3	69	3	69	y	0.00	0	56	0	56	n	ENSMUSG00000026427.17	Eif2d	chr1	protein_coding	eukaryotic translation initiation factor 2D
known_NIR_92	chr1	131092243	131092857	+	131092243;131092506	131092357;131092857	ES	ENSMUST00000112446.9	known	0.00	0	91.0	0	78;104	n	0.01	1	89.5	1	70;109	n	0.02	2	114.5	2	89;140	y	0.02	2	93.0	2	79;107	y	0.00	0	113.5	0	100;127	n	0.00	0	69.0	0	57;81	n	0.05	6	115.0	6	87;143	y	0.00	0	49.0	0	48;50	n	0.00	0	76.5	0	67;86	n	0.00	0	110.0	0	87;133	n	0.01	1	92.5	1	94;91	n	0.00	0	82.5	0	61;104	n	ENSMUSG00000026427.17	Eif2d	chr1	protein_coding	eukaryotic translation initiation factor 2D
known_NIR_93	chr1	131098848	131101041	+	131098848	131099658	3pMXE	ENSMUST00000112446.9	known	1.00	130	0	130	0	n	0.99	106	1	106	1	n	1.00	90	0	90	0	n	1.00	92	0	92	0	n	1.00	107	0	107	0	n	0.98	79	2	79	2	y	1.00	120	0	120	0	n	0.97	56	2	56	2	y	1.00	88	0	88	0	n	0.98	98	2	98	2	y	1.00	85	0	85	0	n	1.00	94	0	94	0	n	ENSMUSG00000026427.17	Eif2d	chr1	protein_coding	eukaryotic translation initiation factor 2D
known_NIR_94	chr1	131109991	131139994	-	131109991	131127590	5pMXE	ENSMUST00000068564.15	known	1.00	10	0	10	0	n	0.62	5	3	5	3	n	0.44	4	5	4	5	n	0.86	6	1	6	1	n	0.82	9	2	9	2	y	0.67	2	1	2	1	n	0.82	9	2	9	2	y	0.62	5	3	5	3	n	1.00	8	0	8	0	n	0.87	13	2	13	2	y	0.85	11	2	11	2	y	1.00	11	0	11	0	n	ENSMUSG00000026430.17	Rassf5	chr1	protein_coding	Ras association (RalGDS/AF-6) domain family member 5
known_NIR_95	chr1	131135461	131139994	-	131109991	131139994	A3SS	ENSMUST00000027688.15	known	0.09	1	10	1	10	n	0.17	1	5	1	5	n	0.20	1	4	1	4	n	0.14	1	6	1	6	n	0.10	1	9	1	9	n	0.00	0	2	0	2	n	0.10	1	9	1	9	n	0.00	0	5	0	5	n	0.20	2	8	2	8	y	0.28	5	13	5	13	y	0.15	2	11	2	11	y	0.15	2	11	2	11	y	ENSMUSG00000026430.17	Rassf5	chr1	protein_coding	Ras association (RalGDS/AF-6) domain family member 5
known_NIR_96	chr1	131203016	131203516	-	131203016	131203444	A5SS	ENSMUST00000062108.10	known	0.00	0	13	0	13	n	0.09	2	20	2	20	y	0.06	5	76	5	76	y	0.04	1	24	1	24	n	0.00	0	55	0	55	n	0.00	0	62	0	62	n	0.06	2	29	2	29	y	0.04	2	51	2	51	y	0.00	0	25	0	25	n	0.11	2	16	2	16	y	0.00	0	15	0	15	n	0.00	0	13	0	13	n	ENSMUSG00000042349.14	Ikbke	chr1	protein_coding	inhibitor of kappaB kinase epsilon
known_NIR_97	chr1	131204315	131204631	-	131204315	131206436	A5SS	ENSMUST00000062108.10	known	0.92	11	1	11	1	n	1.00	5	0	5	0	n	1.00	19	0	19	0	n	1.00	6	0	6	0	n	0.86	19	3	19	3	y	1.00	28	0	28	0	n	0.68	13	6	13	6	y	0.95	19	1	19	1	n	0.75	6	2	6	2	n	0.75	3	1	3	1	n	1.00	8	0	8	0	n	0.75	6	2	6	2	n	ENSMUSG00000042349.14	Ikbke	chr1	protein_coding	inhibitor of kappaB kinase epsilon
known_NIR_98	chr1	131217478;131219428	131219334;131220259	-	131217478	131220259	cassetteExon	ENSMUST00000097588.9	known	0.17	1.0	5	0;2	5	n	0.50	3.0	3	2;4	3	n	0.00	0.0	7	0;0	7	n	0.00	0.0	9	0;0	9	n	0.22	4.0	14	5;3	14	y	0.00	0.0	2	0;0	2	n	0.08	1.0	12	1;1	12	n	0.14	0.5	3	0;1	3	n	0.18	1.5	7	1;2	7	n	0.16	3.5	19	3;4	19	y	0.10	1.0	9	2;0	9	n	0.08	1.0	12	2;0	12	n	ENSMUSG00000026425.16	Srgap2	chr1	protein_coding	SLIT-ROBO Rho GTPase activating protein 2
known_NIR_99	chr1	131223277	131224058	-	131220583	131224058	A3SS	ENSMUST00000097588.9	known	0.61	11	7	11	7	y	1.00	8	0	8	0	n	0.92	11	1	11	1	n	0.62	5	3	5	3	n	0.53	9	8	9	8	y	1.00	6	0	6	0	n	0.46	6	7	6	7	y	0.40	2	3	2	3	n	0.75	9	3	9	3	y	0.29	5	12	5	12	y	0.69	11	5	11	5	y	0.50	7	7	7	7	y	ENSMUSG00000026425.16	Srgap2	chr1	protein_coding	SLIT-ROBO Rho GTPase activating protein 2
known_NIR_100	chr1	131224937	131226070	-	131224204	131226070	A3SS	ENSMUST00000097588.9	known	0.05	1	20	1	20	n	0.00	0	20	0	20	n	0.17	4	20	4	20	y	0.08	1	11	1	11	n	0.03	1	28	1	28	n	0.00	0	19	0	19	n	0.00	0	21	0	21	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.05	1	20	1	20	n	0.10	2	19	2	19	y	0.00	0	25	0	25	n	ENSMUSG00000026425.16	Srgap2	chr1	protein_coding	SLIT-ROBO Rho GTPase activating protein 2
known_NIR_101	chr1	131739941	131740028	+	131739941	131741629	A3SS	ENSMUST00000112393.9	known	0.01	1	145	1	145	n	0.04	4	110	4	110	y	0.00	0	66	0	66	n	0.04	7	179	7	179	y	0.01	2	175	2	175	y	0.06	4	59	4	59	y	0.01	1	155	1	155	n	0.00	0	62	0	62	n	0.01	2	135	2	135	y	0.02	4	212	4	212	y	0.03	5	144	5	144	y	0.02	4	199	4	199	y	ENSMUSG00000042251.13	Pm20d1	chr1	protein_coding	peptidase M20 domain containing 1
known_NIR_102	chr1	131743849	131743993	+	131743849	131748440	A3SS	ENSMUST00000048660.12	known	0.43	3	4	3	4	n	0.53	10	9	10	9	y	0.33	3	6	3	6	n	0.62	10	6	10	6	y	0.55	6	5	6	5	y	1.00	5	0	5	0	n	0.67	12	6	12	6	y	0.70	7	3	7	3	y	1.00	7	0	7	0	n	0.57	13	10	13	10	y	0.65	11	6	11	6	y	0.62	8	5	8	5	y	ENSMUSG00000042251.13	Pm20d1	chr1	protein_coding	peptidase M20 domain containing 1
known_NIR_103	chr1	131855954	131857351	+	131855954	131857354	A3SS	ENSMUST00000189946.7	known	0.82	98	21	98	21	y	0.77	80	24	80	24	y	0.79	131	34	131	34	y	0.82	93	21	93	21	y	0.76	139	45	139	45	y	0.79	99	26	99	26	y	0.79	143	39	143	39	y	0.84	87	17	87	17	y	0.84	68	13	68	13	y	0.79	107	29	107	29	y	0.86	108	17	108	17	y	0.80	96	24	96	24	y	ENSMUSG00000026434.13	Nucks1	chr1	protein_coding	nuclear casein kinase and cyclin-dependent kinase substrate 1
known_NIR_104	chr1	131898565	131904456	+	131890790	131904456	A5SS	ENSMUST00000191034.2	known	0.86	42	7	42	7	y	0.80	41	10	41	10	y	0.85	57	10	57	10	y	0.92	46	4	46	4	y	0.94	72	5	72	5	y	0.96	47	2	47	2	y	0.94	66	4	66	4	y	0.91	52	5	52	5	y	0.92	35	3	35	3	y	0.97	39	1	39	1	n	0.89	31	4	31	4	y	0.74	23	8	23	8	y	ENSMUSG00000100037.2	Gm29103	chr1	lncRNA	predicted gene 29103
known_NIR_105	chr1	131904850	131905193	+	131904850	131905151	A3SS	ENSMUST00000177943.8	known	0.00	0	28	0	28	n	0.06	1	17	1	17	n	0.00	0	52	0	52	n	0.00	0	28	0	28	n	0.00	0	34	0	34	n	0.08	3	36	3	36	y	0.09	2	21	2	21	y	0.07	2	28	2	28	y	0.00	0	15	0	15	n	0.00	0	25	0	25	n	0.00	0	17	0	17	n	0.00	0	10	0	10	n	ENSMUSG00000026435.16	Slc45a3	chr1	protein_coding	solute carrier family 45, member 3
known_NIR_106	chr1	131935678;131940972	131940764;131942121	+	131935678	131942121	cassetteExon	ENSMUST00000086556.12	known	0.57	4.0	3	4;4	3	y	0.38	2.5	4	2;3	4	n	0.29	5.0	12	0;10	12	n	0.26	2.5	7	1;4	7	n	0.18	3.0	14	3;3	14	y	0.00	0.0	14	0;0	14	n	0.19	3.0	13	1;5	13	n	0.29	4.0	10	1;7	10	n	0.38	3.0	5	4;2	5	y	0.21	4.5	17	3;6	17	y	0.23	4.5	15	3;6	15	y	0.26	5.0	14	2;8	14	y	ENSMUSG00000026436.16	Elk4	chr1	protein_coding	ELK4, member of ETS oncogene family
known_NIR_107	chr1	131947204	131959302	+	131947204	131951291	3pMXE	ENSMUST00000086556.12	known	0.00	0	14	0	14	n	0.07	1	13	1	13	n	0.00	0	27	0	27	n	0.07	2	28	2	28	y	0.00	0	34	0	34	n	0.00	0	14	0	14	n	0.00	0	23	0	23	n	0.00	0	18	0	18	n	0.00	0	15	0	15	n	0.00	0	37	0	37	n	0.00	0	19	0	19	n	0.00	0	23	0	23	n	ENSMUSG00000026436.16	Elk4	chr1	protein_coding	ELK4, member of ETS oncogene family
known_NIR_108	chr1	131947204	131959302	+	131947204;131951576	131951291;131959302	ES	ENSMUST00000147218.2	known	0.00	0	8.0	0	14;2	n	0.12	1	7.0	1	13;1	n	0.00	0	13.5	0	27;0	n	0.12	2	15.0	2	28;2	y	0.00	0	17.5	0	34;1	n	0.00	0	7.5	0	14;1	n	0.00	0	12.5	0	23;2	n	0.00	0	12.0	0	18;6	n	0.00	0	9.0	0	15;3	n	0.00	0	19.0	0	37;1	n	0.00	0	10.5	0	19;2	n	0.00	0	11.5	0	23;0	n	ENSMUSG00000026436.16	Elk4	chr1	protein_coding	ELK4, member of ETS oncogene family
known_NIR_109	chr1	132043690	132044334	-	132043690	132044185	A5SS	ENSMUST00000188387.7	known	0.01	1	84	1	84	n	0.04	3	74	3	74	y	0.08	6	70	6	70	y	0.01	1	118	1	118	n	0.06	6	102	6	102	y	0.00	0	37	0	37	n	0.05	5	88	5	88	y	0.03	2	68	2	68	y	0.02	1	62	1	62	n	0.01	1	110	1	110	n	0.01	1	104	1	104	n	0.04	3	78	3	78	y	ENSMUSG00000026437.12	Cdk18	chr1	protein_coding	cyclin-dependent kinase 18
known_NIR_110	chr1	132043690	132044334	-	132043690;132044227	132044185;132044334	ES	ENSMUST00000027697.12	known	0.01	1	87.0	1	84;90	n	0.04	3	70.0	3	74;66	y	0.09	6	63.0	6	70;56	y	0.01	1	109.0	1	118;100	n	0.06	6	100.5	6	102;99	y	0.00	0	36.0	0	37;35	n	0.06	5	81.5	5	88;75	y	0.03	2	62.0	2	68;56	y	0.02	1	58.0	1	62;54	n	0.01	1	99.5	1	110;89	n	0.01	1	97.0	1	104;90	n	0.04	3	69.5	3	78;61	y	ENSMUSG00000026437.12	Cdk18	chr1	protein_coding	cyclin-dependent kinase 18
known_NIR_111	chr1	132244210	132245160	+	132244210	132252691	A3SS	ENSMUST00000072177.14	known	0.00	0	12	0	12	n	0.12	2	14	2	14	y	0.20	3	12	3	12	y	0.00	0	17	0	17	n	0.09	3	31	3	31	y	0.00	0	8	0	8	n	0.23	7	24	7	24	y	0.08	1	11	1	11	n	0.00	0	9	0	9	n	0.18	3	14	3	14	y	0.00	0	15	0	15	n	0.07	2	27	2	27	y	ENSMUSG00000009772.16	Nuak2	chr1	protein_coding	NUAK family, SNF1-like kinase, 2
known_NIR_112	chr1	13232512	13237120	-	13235326	13237120	3pMXE	ENSMUST00000147927.8	known	0.71	15	6	15	6	y	0.65	13	7	13	7	y	0.58	22	16	22	16	y	0.44	16	20	16	20	y	0.62	23	14	23	14	y	0.26	6	17	6	17	y	0.50	16	16	16	16	y	0.43	9	12	9	12	y	0.70	16	7	16	7	y	0.63	22	13	22	13	y	0.57	13	10	13	10	y	0.51	18	17	18	17	y	ENSMUSG00000005886.15	Ncoa2	chr1	protein_coding	nuclear receptor coactivator 2
known_NIR_113	chr1	13232512;13235326	13235120;13237120	-	13232512	13237120	cassetteExon	ENSMUST00000081713.11	known	0.41	10.5	15	15;6	15	y	0.38	8.0	13	9;7	13	y	0.42	16.0	22	16;16	22	y	0.55	19.5	16	19;20	16	y	0.38	14.0	23	14;14	23	y	0.71	14.5	6	12;17	6	y	0.52	17.5	16	19;16	16	y	0.51	9.5	9	7;12	9	y	0.32	7.5	16	8;7	16	y	0.43	16.5	22	20;13	22	y	0.43	10.0	13	10;10	13	y	0.49	17.0	18	17;17	18	y	ENSMUSG00000005886.15	Ncoa2	chr1	protein_coding	nuclear receptor coactivator 2
known_NIR_114	chr1	132425745	132431502	+	132425859	132431502	A5SS	ENSMUST00000190997.7	known	0.77	33	10	33	10	y	0.71	17	7	17	7	y	0.68	15	7	15	7	y	0.82	36	8	36	8	y	0.68	30	14	30	14	y	0.72	13	5	13	5	y	0.73	27	10	27	10	y	0.75	12	4	12	4	y	0.66	19	10	19	10	y	0.64	36	20	36	20	y	0.76	29	9	29	9	y	0.80	35	9	35	9	y	ENSMUSG00000026439.15	Rbbp5	chr1	protein_coding	retinoblastoma binding protein 5, histone lysine methyltransferase complex subunit
known_NIR_115	chr1	132931628	132936875	-	132931628;132932459	132932392;132936875	ES	ENSMUST00000186617.7	known	0.42	5	7.0	5	7;7	y	0.40	2	3.0	2	5;1	n	0.18	2	9.0	2	7;11	y	0.33	2	4.0	2	2;6	y	0.26	5	14.5	5	18;11	y	0.13	1	6.5	1	9;4	n	0.25	4	12.0	4	14;10	y	0.00	0	14.0	0	17;11	n	0.19	2	8.5	2	11;6	y	0.35	6	11.0	6	10;12	y	0.33	2	4.0	2	3;5	y	0.14	1	6.0	1	8;4	n	ENSMUSG00000054387.14	Mdm4	chr1	protein_coding	transformed mouse 3T3 cell double minute 4
known_NIR_116	chr1	132931628;132932430	132932392;132936875	-	132931628	132936875	cassetteExon	ENSMUST00000191212.7	known	0.44	4.0	5	7;1	5	n	0.56	2.5	2	5;0	2	n	0.64	3.5	2	7;0	2	n	0.33	1.0	2	2;0	2	n	0.67	10.0	5	18;2	5	y	0.83	5.0	1	9;1	1	n	0.64	7.0	4	14;0	4	n	1.00	8.5	0	17;0	0	n	0.73	5.5	2	11;0	2	n	0.45	5.0	6	10;0	6	n	0.43	1.5	2	3;0	2	n	0.80	4.0	1	8;0	1	n	ENSMUSG00000054387.14	Mdm4	chr1	protein_coding	transformed mouse 3T3 cell double minute 4
known_NIR_117	chr1	132932430	132936875	-	132932459	132936875	A3SS	ENSMUST00000186617.7	known	0.12	1	7	1	7	n	0.00	0	1	0	1	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.15	2	11	2	11	y	0.20	1	4	1	4	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	ENSMUSG00000054387.14	Mdm4	chr1	protein_coding	transformed mouse 3T3 cell double minute 4
known_NIR_118	chr1	132940452	132946515	-	132940449	132946515	A3SS	ENSMUST00000186617.7	known	0.25	5	15	5	15	y	0.40	4	6	4	6	y	0.37	7	12	7	12	y	0.53	9	8	9	8	y	0.53	20	18	20	18	y	0.50	6	6	6	6	y	0.69	11	5	11	5	y	0.24	4	13	4	13	y	0.47	9	10	9	10	y	0.45	5	6	5	6	y	0.58	7	5	7	5	y	0.50	9	9	9	9	y	ENSMUSG00000054387.14	Mdm4	chr1	protein_coding	transformed mouse 3T3 cell double minute 4
known_NIR_119	chr1	132946622	132952986	-	132946622	132947092	A5SS&ES	ENSMUST00000190807.2	known	1.00	12	0	12	0	n	1.00	8	0	8	0	n	1.00	19	0	19	0	n	0.95	21	1	21	1	n	1.00	21	0	21	0	n	1.00	11	0	11	0	n	1.00	6	0	6	0	n	0.88	21	3	21	3	y	1.00	13	0	13	0	n	1.00	15	0	15	0	n	0.89	8	1	8	1	n	1.00	16	0	16	0	n	ENSMUSG00000054387.14	Mdm4	chr1	protein_coding	transformed mouse 3T3 cell double minute 4
known_NIR_120	chr1	133059648	133064401	+	133061353	133064401	A5SS	ENSMUST00000052529.4	known	0.08	9	100	9	100	y	0.22	17	59	17	59	y	0.16	19	103	19	103	y	0.13	17	111	17	111	y	0.08	10	121	10	121	y	0.10	6	52	6	52	y	0.22	25	88	25	88	y	0.24	18	56	18	56	y	0.13	12	80	12	80	y	0.12	16	119	16	119	y	0.06	5	79	5	79	y	0.08	11	122	11	122	y	ENSMUSG00000046062.6	Ppp1r15b	chr1	protein_coding	protein phosphatase 1, regulatory subunit 15B
known_NIR_121	chr1	133184776	133186747	+	133173880	133186747	A5SS	ENSMUST00000105082.9	known	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.20	2	8	2	8	y	0.14	2	12	2	12	y	0.08	2	24	2	24	y	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	17	0	17	n	0.10	1	9	1	9	n	0.00	0	24	0	24	n	ENSMUSG00000041757.18	Plekha6	chr1	protein_coding	pleckstrin homology domain containing, family A member 6
known_NIR_122	chr1	133194404	133197738	+	133194404	133197798	A3SS	ENSMUST00000212252.2	known	1.00	4	0	4	0	n	0.83	15	3	15	3	y	0.69	11	5	11	5	y	0.52	11	10	11	10	y	0.84	31	6	31	6	y	0.73	8	3	8	3	y	0.83	15	3	15	3	y	0.64	9	5	9	5	y	0.78	7	2	7	2	n	0.52	12	11	12	11	y	0.62	8	5	8	5	y	0.64	7	4	7	4	y	ENSMUSG00000041757.18	Plekha6	chr1	protein_coding	pleckstrin homology domain containing, family A member 6
known_NIR_123	chr1	133197316	133197738	+	133194404	133197738	A5SS	ENSMUST00000105082.9	known	0.20	1	4	1	4	n	0.00	0	15	0	15	n	0.00	0	11	0	11	n	0.08	1	11	1	11	n	0.03	1	31	1	31	n	0.27	3	8	3	8	y	0.12	2	15	2	15	y	0.25	3	9	3	9	y	0.22	2	7	2	7	n	0.00	0	12	0	12	n	0.11	1	8	1	8	n	0.22	2	7	2	7	n	ENSMUSG00000041757.18	Plekha6	chr1	protein_coding	pleckstrin homology domain containing, family A member 6
known_NIR_124	chr1	133202112	133202531	+	133202112	133209521	A3SS	ENSMUST00000189598.2	known	0.87	13	2	13	2	y	0.83	5	1	5	1	n	0.38	3	5	3	5	n	0.64	14	8	14	8	y	0.41	9	13	9	13	y	0.40	2	3	2	3	n	0.47	8	9	8	9	y	0.60	6	4	6	4	y	0.33	5	10	5	10	y	0.42	8	11	8	11	y	0.25	2	6	2	6	n	0.23	3	10	3	10	y	ENSMUSG00000041757.18	Plekha6	chr1	protein_coding	pleckstrin homology domain containing, family A member 6
known_NIR_125	chr1	133202112	133209521	+	133202112;133208145	133208077;133209521	ES	ENSMUST00000187285.7	known	0.08	2	22.0	2	19;25	y	0.10	1	9.0	1	7;11	n	0.29	5	12.0	5	11;13	y	0.28	8	20.5	8	19;22	y	0.32	13	28.0	13	22;34	y	0.32	3	6.5	3	8;5	y	0.30	9	21.5	9	20;23	y	0.22	4	14.0	4	10;18	y	0.43	10	13.5	10	10;17	y	0.28	11	28.5	11	21;36	y	0.23	6	20.5	6	17;24	y	0.38	10	16.5	10	16;17	y	ENSMUSG00000041757.18	Plekha6	chr1	protein_coding	pleckstrin homology domain containing, family A member 6
known_NIR_126	chr1	133202112;133202617	133202531;133208077	+	133202112	133208077	cassetteExon	ENSMUST00000187285.7	known	0.37	11.0	19	13;9	19	y	0.39	4.5	7	5;4	7	y	0.24	3.5	11	3;4	11	y	0.37	11.0	19	14;8	19	y	0.28	8.5	22	9;8	22	y	0.16	1.5	8	2;1	8	n	0.23	6.0	20	8;4	20	y	0.41	7.0	10	6;8	10	y	0.33	5.0	10	5;5	10	y	0.18	4.5	21	8;1	21	n	0.21	4.5	17	2;7	17	y	0.09	1.5	16	3;0	16	n	ENSMUSG00000041757.18	Plekha6	chr1	protein_coding	pleckstrin homology domain containing, family A member 6
known_NIR_127	chr1	133202617;133203603	133203550;133208077	+	133202617	133208077	cassetteExon	ENSMUST00000190186.7	known	0.18	2.0	9	4;0	9	n	0.50	4.0	4	4;4	4	y	0.00	0.0	4	0;0	4	n	0.20	2.0	8	2;2	8	y	0.11	1.0	8	0;2	8	n	0.00	0.0	1	0;0	1	n	0.47	3.5	4	4;3	4	y	0.16	1.5	8	1;2	8	n	0.09	0.5	5	1;0	5	n	0.71	2.5	1	2;3	1	n	0.00	0.0	7	0;0	7	n	1.00	3.5	0	3;4	0	n	ENSMUSG00000041757.18	Plekha6	chr1	protein_coding	pleckstrin homology domain containing, family A member 6
known_NIR_128	chr1	133203603	133208077	+	133202112	133208077	A5SS	ENSMUST00000187285.7	known	0.00	0	19	0	19	n	0.36	4	7	4	7	y	0.00	0	11	0	11	n	0.10	2	19	2	19	y	0.08	2	22	2	22	y	0.00	0	8	0	8	n	0.13	3	20	3	20	y	0.17	2	10	2	10	y	0.00	0	10	0	10	n	0.12	3	21	3	21	y	0.00	0	17	0	17	n	0.20	4	16	4	16	y	ENSMUSG00000041757.18	Plekha6	chr1	protein_coding	pleckstrin homology domain containing, family A member 6
known_NIR_129	chr1	133213124;133214134	133213985;133215208	+	133213124	133215208	cassetteExon	ENSMUST00000187285.7	known	0.06	2.0	29	1;3	29	n	0.05	1.5	26	1;2	26	n	0.09	2.5	24	2;3	24	y	0.03	1.0	28	0;2	28	n	0.11	6.5	54	3;10	54	y	0.09	1.5	16	2;1	16	n	0.10	3.0	27	1;5	27	n	0.06	1.5	24	1;2	24	n	0.01	0.5	33	0;1	33	n	0.00	0.0	56	0;0	56	n	0.16	4.5	24	4;5	24	y	0.01	0.5	46	1;0	46	n	ENSMUSG00000041757.18	Plekha6	chr1	protein_coding	pleckstrin homology domain containing, family A member 6
known_NIR_130	chr1	133237703	133247019	+	133237649	133247019	A5SS	ENSMUST00000094557.7	known	0.00	0	149	0	149	n	0.00	0	156	0	156	n	0.00	0	104	0	104	n	0.00	0	157	0	157	n	0.01	2	185	2	185	y	0.00	0	84	0	84	n	0.01	2	188	2	188	y	0.00	0	90	0	90	n	0.00	0	125	0	125	n	0.00	0	148	0	148	n	0.00	0	125	0	125	n	0.00	0	125	0	125	n	ENSMUSG00000103421.2	Golt1a	chr1	protein_coding	golgi transport 1A
known_NIR_131	chr1	133295098	133296488	+	133293573	133296488	A5SS	ENSMUST00000135222.9	known	0.00	1	1434	1	1434	n	0.00	5	1024	5	1024	y	0.00	0	408	0	408	n	0.00	3	1226	3	1226	y	0.00	3	1456	3	1456	y	0.01	2	366	2	366	y	0.00	0	1431	0	1431	n	0.00	0	465	0	465	n	0.01	5	916	5	916	y	0.00	2	1358	2	1358	y	0.00	1	931	1	931	n	0.00	1	1306	1	1306	n	ENSMUSG00000070644.14	Etnk2	chr1	protein_coding	ethanolamine kinase 2
known_NIR_132	chr1	133316301	133316667	-	133316298	133316667	A3SS	ENSMUST00000144386.8	known	0.30	3	7	3	7	y	0.27	3	8	3	8	y	0.30	3	7	3	7	y	0.50	4	4	4	4	n	0.56	14	11	14	11	y	0.64	9	5	9	5	y	0.70	7	3	7	3	y	0.50	5	5	5	5	y	0.71	5	2	5	2	n	0.50	10	10	10	10	y	0.80	4	1	4	1	n	0.38	3	5	3	5	n	ENSMUSG00000070643.12	Sox13	chr1	protein_coding	SRY (sex determining region Y)-box 13
known_NIR_133	chr1	133531814	133536635	-	133531814;133534317	133534239;133536635	ES	ENSMUST00000166915.8	known	0.01	2	237.5	2	238;237	y	0.01	3	274.0	3	301;247	y	0.00	0	249.5	0	249;250	n	0.02	5	220.5	5	209;232	y	0.01	4	305.0	4	323;287	y	0.00	0	140.5	0	150;131	n	0.01	2	300.0	2	298;302	y	0.00	0	143.5	0	136;151	n	0.01	2	234.5	2	244;225	y	0.00	1	305.0	1	338;272	n	0.01	4	309.0	4	295;323	y	0.01	2	318.0	2	359;277	y	ENSMUSG00000090553.9	Snrpe	chr1	protein_coding	small nuclear ribonucleoprotein E
known_NIR_134	chr1	133531814	133536635	-	133534317	133536635	3pMXE	ENSMUST00000164096.2	known	0.01	2	237	2	237	y	0.01	3	247	3	247	y	0.00	0	250	0	250	n	0.02	5	232	5	232	y	0.01	4	287	4	287	y	0.00	0	131	0	131	n	0.01	2	302	2	302	y	0.00	0	151	0	151	n	0.01	2	225	2	225	y	0.00	1	272	1	272	n	0.01	4	323	4	323	y	0.01	2	277	2	277	y	ENSMUSG00000090553.9	Snrpe	chr1	protein_coding	small nuclear ribonucleoprotein E
known_NIR_135	chr1	133553668	133554722	-	133553668	133554505	A5SS	ENSMUST00000191896.6	known	0.05	7	129	7	129	y	0.03	3	104	3	104	y	0.00	0	171	0	171	n	0.01	2	140	2	140	y	0.02	3	189	3	189	y	0.00	0	78	0	78	n	0.01	2	171	2	171	y	0.01	1	86	1	86	n	0.00	0	133	0	133	n	0.02	3	194	3	194	y	0.00	0	106	0	106	n	0.00	0	174	0	174	n	ENSMUSG00000102976.7	Zc3h11a	chr1	protein_coding	zinc finger CCCH type containing 11A
known_NIR_136	chr1	13356249	13444162	-	13356249	13442407	5pMXE	ENSMUST00000081713.11	known	1.00	8	0	8	0	n	1.00	8	0	8	0	n	1.00	9	0	9	0	n	1.00	10	0	10	0	n	1.00	13	0	13	0	n	1.00	7	0	7	0	n	0.80	4	1	4	1	n	1.00	8	0	8	0	n	1.00	7	0	7	0	n	0.82	9	2	9	2	y	1.00	4	0	4	0	n	1.00	7	0	7	0	n	ENSMUSG00000005886.15	Ncoa2	chr1	protein_coding	nuclear receptor coactivator 2
known_NIR_137	chr1	13356249;13369946	13369887;13444162	-	13356249	13444162	cassetteExon	ENSMUST00000068304.13	known	0.06	0.5	8	0;1	8	n	0.24	2.5	8	3;2	8	y	0.45	7.5	9	8;7	9	y	0.00	0.0	10	0;0	10	n	0.13	2.0	13	2;2	13	y	0.00	0.0	7	0;0	7	n	0.50	4.0	4	6;2	4	y	0.11	1.0	8	1;1	8	n	0.22	2.0	7	1;3	7	n	0.10	1.0	9	2;0	9	n	0.27	1.5	4	2;1	4	n	0.12	1.0	7	2;0	7	n	ENSMUSG00000005886.15	Ncoa2	chr1	protein_coding	nuclear receptor coactivator 2
known_NIR_138	chr1	133581770	133588975	-	133581770	133583083	A5SS&ES	ENSMUST00000195424.6	known	0.29	4	10	4	10	y	0.00	0	1	0	1	n	0.91	10	1	10	1	n	0.20	2	8	2	8	y	0.36	4	7	4	7	y	0.60	3	2	3	2	n	0.25	2	6	2	6	n	0.50	2	2	2	2	n	0.00	0	3	0	3	n	0.57	4	3	4	3	n	0.33	3	6	3	6	n	0.44	4	5	4	5	n	ENSMUSG00000102976.7	Zc3h11a	chr1	protein_coding	zinc finger CCCH type containing 11A
known_NIR_139	chr1	133581770	133588975	-	133581770;133583136	133583083;133588975	ES	ENSMUST00000191896.6	known	0.28	4	10.5	4	10;11	y	0.00	0	6.0	0	1;11	n	0.74	10	3.5	10	1;6	n	0.16	2	10.5	2	8;13	y	0.27	4	11.0	4	7;15	y	0.43	3	4.0	3	2;6	y	0.15	2	11.5	2	6;17	y	0.40	2	3.0	2	2;4	n	0.00	0	7.5	0	3;12	n	0.29	4	10.0	4	3;17	y	0.26	3	8.5	3	6;11	y	0.26	4	11.5	4	5;18	y	ENSMUSG00000102976.7	Zc3h11a	chr1	protein_coding	zinc finger CCCH type containing 11A
known_NIR_140	chr1	133581770	133588975	-	133583136	133588975	3pMXE	ENSMUST00000192775.2	known	0.27	4	11	4	11	y	0.00	0	11	0	11	n	0.62	10	6	10	6	y	0.13	2	13	2	13	y	0.21	4	15	4	15	y	0.33	3	6	3	6	n	0.11	2	17	2	17	y	0.33	2	4	2	4	n	0.00	0	12	0	12	n	0.19	4	17	4	17	y	0.21	3	11	3	11	y	0.18	4	18	4	18	y	ENSMUSG00000102976.7	Zc3h11a	chr1	protein_coding	zinc finger CCCH type containing 11A
known_NIR_141	chr1	133581770	133588994	-	133581770	133583083	A5SS&ES	ENSMUST00000191896.6	known	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.20	2	8	2	8	y	0.12	1	7	1	7	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.50	2	2	2	2	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.17	1	5	1	5	n	ENSMUSG00000102976.7	Zc3h11a	chr1	protein_coding	zinc finger CCCH type containing 11A
known_NIR_142	chr1	133581770	133588994	-	133581770;133583136	133583083;133588994	ES	ENSMUST00000192107.6	known	0.00	0	7.5	0	10;5	n	0.00	0	1.0	0	1;1	n	0.00	0	2.5	0	1;4	n	0.18	2	9.0	2	8;10	y	0.22	1	3.5	1	7;0	n	0.00	0	2.0	0	2;2	n	0.00	0	4.0	0	6;2	n	0.57	2	1.5	2	2;1	n	0.25	1	3.0	1	3;3	n	0.00	0	3.0	0	3;3	n	0.00	0	4.5	0	6;3	n	0.22	1	3.5	1	5;2	n	ENSMUSG00000102976.7	Zc3h11a	chr1	protein_coding	zinc finger CCCH type containing 11A
known_NIR_143	chr1	133582176	133583083	-	133581770	133583083	A3SS	ENSMUST00000191896.6	known	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.67	2	1	2	1	n	0.11	1	8	1	8	n	0.30	3	7	3	7	y	0.00	0	2	0	2	n	0.40	4	6	4	6	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	ENSMUSG00000102976.7	Zc3h11a	chr1	protein_coding	zinc finger CCCH type containing 11A
known_NIR_144	chr1	133583136	133585127	-	133583136	133588975	A5SS	ENSMUST00000191896.6	known	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.00	0	15	0	15	n	0.14	1	6	1	6	n	0.15	3	17	3	17	y	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	17	0	17	n	0.00	0	11	0	11	n	0.00	0	18	0	18	n	ENSMUSG00000102976.7	Zc3h11a	chr1	protein_coding	zinc finger CCCH type containing 11A
known_NIR_145	chr1	133583136	133588314	-	133583136	133588975	A5SS	ENSMUST00000191896.6	known	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	17	0	17	n	0.00	0	4	0	4	n	0.14	2	12	2	12	y	0.06	1	17	1	17	n	0.00	0	11	0	11	n	0.00	0	18	0	18	n	ENSMUSG00000102976.7	Zc3h11a	chr1	protein_coding	zinc finger CCCH type containing 11A
known_NIR_146	chr1	133583136	133588994	-	133583136	133588975	A5SS	ENSMUST00000191896.6	known	0.31	5	11	5	11	y	0.08	1	11	1	11	n	0.40	4	6	4	6	y	0.43	10	13	10	13	y	0.00	0	15	0	15	n	0.25	2	6	2	6	n	0.11	2	17	2	17	y	0.20	1	4	1	4	n	0.20	3	12	3	12	y	0.15	3	17	3	17	y	0.21	3	11	3	11	y	0.10	2	18	2	18	y	ENSMUSG00000102976.7	Zc3h11a	chr1	protein_coding	zinc finger CCCH type containing 11A
known_NIR_147	chr1	133842786	133848993	-	133843159	133848993	A3SS	ENSMUST00000048432.6	known	0.00	0	9	0	9	n	0.00	0	29	0	29	n	0.00	0	56	0	56	n	0.00	0	16	0	16	n	0.00	0	40	0	40	n	0.00	0	31	0	31	n	0.00	0	43	0	43	n	0.05	3	57	3	57	y	0.00	0	14	0	14	n	0.00	0	23	0	23	n	0.00	0	23	0	23	n	0.00	0	21	0	21	n	ENSMUSG00000041577.6	Prelp	chr1	protein_coding	proline arginine-rich end leucine-rich repeat
known_NIR_148	chr1	134162184	134162966	-	134162150	134162966	A3SS	ENSMUST00000086465.6	known	-	-	-	-	-	-	-	-	-	-	-	-	0.54	7	6	7	6	y	1.00	2	0	2	0	n	0.50	3	3	3	3	n	0.60	6	4	6	4	y	0.00	0	5	0	5	n	0.14	1	6	1	6	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.50	3	3	3	3	n	ENSMUSG00000042429.9	Adora1	chr1	protein_coding	adenosine A1 receptor
known_NIR_149	chr1	134280173;134280875	134280713;134282399	-	134280173	134282399	cassetteExon	ENSMUST00000049470.11	known	0.07	21.5	280	15;28	280	y	0.05	13.5	281	12;15	281	y	0.12	27.5	200	30;25	200	y	0.05	22.0	379	32;12	379	y	0.10	36.5	331	43;30	331	y	0.11	12.5	102	14;11	102	y	0.06	19.5	305	22;17	305	y	0.09	17.0	162	23;11	162	y	0.09	23.5	236	25;22	236	y	0.07	29.0	412	30;28	412	y	0.07	19.0	265	27;11	265	y	0.07	33.0	439	26;40	439	y	ENSMUSG00000042305.13	Tmem183a	chr1	protein_coding	transmembrane protein 183A
known_NIR_150	chr1	134333791	134334147	+	134333791	134334051	A3SS	ENSMUST00000154237.8	known	0.20	2	8	2	8	y	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.10	1	9	1	9	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.07	1	13	1	13	n	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.06	1	17	1	17	n	ENSMUSG00000026456.19	Cyb5r1	chr1	protein_coding	cytochrome b5 reductase 1
known_NIR_151	chr1	134335441	134336142	+	134335441	134335555	3pMXE	ENSMUST00000186489.7	known	0.85	17	3	17	3	y	0.75	18	6	18	6	y	0.56	10	8	10	8	y	0.57	12	9	12	9	y	0.74	20	7	20	7	y	0.67	14	7	14	7	y	0.73	24	9	24	9	y	0.72	13	5	13	5	y	0.92	22	2	22	2	y	0.85	28	5	28	5	y	0.64	18	10	18	10	y	0.78	29	8	29	8	y	ENSMUSG00000026456.19	Cyb5r1	chr1	protein_coding	cytochrome b5 reductase 1
known_NIR_152	chr1	134343323	134350659	+	134343727	134350659	A5SS	ENSMUST00000112237.2	known	0.73	134	50	134	50	y	0.70	104	45	104	45	y	0.66	172	89	172	89	y	0.78	161	45	161	45	y	0.75	219	72	219	72	y	0.69	138	61	138	61	y	0.72	196	78	196	78	y	0.73	123	45	123	45	y	0.74	90	32	90	32	y	0.73	180	68	180	68	y	0.74	125	44	125	44	y	0.76	170	54	170	54	y	ENSMUSG00000026457.15	Adipor1	chr1	protein_coding	adiponectin receptor 1
known_NIR_153	chr1	134383403	134386204	+	134383403	134386166	A3SS	ENSMUST00000133721.8	known	0.88	7	1	7	1	n	1.00	2	0	2	0	n	0.93	14	1	14	1	n	1.00	12	0	12	0	n	0.94	16	1	16	1	n	0.82	9	2	9	2	y	1.00	14	0	14	0	n	1.00	2	0	2	0	n	0.86	6	1	6	1	n	1.00	15	0	15	0	n	1.00	11	0	11	0	n	0.95	19	1	19	1	n	ENSMUSG00000026455.15	Klhl12	chr1	protein_coding	kelch-like 12
known_NIR_154	chr1	134688233	134699736	-	134693815	134699736	3pMXE	ENSMUST00000086444.6	known	1.00	4	0	4	0	n	1.00	2	0	2	0	n	1.00	2	0	2	0	n	1.00	2	0	2	0	n	1.00	3	0	3	0	n	1.00	2	0	2	0	n	0.36	4	7	4	7	y	1.00	2	0	2	0	n	1.00	5	0	5	0	n	1.00	4	0	4	0	n	1.00	4	0	4	0	n	-	-	-	-	-	-	ENSMUSG00000073557.13	Ppp1r12b	chr1	protein_coding	protein phosphatase 1, regulatory subunit 12B
known_NIR_155	chr1	134688233;134693815	134693635;134699736	-	134688233	134699736	cassetteExon	ENSMUST00000045665.13	known	0.00	0.0	4	0;0	4	n	0.00	0.0	2	0;0	2	n	0.00	0.0	2	0;0	2	n	0.00	0.0	2	0;0	2	n	0.00	0.0	3	0;0	3	n	0.00	0.0	2	0;0	2	n	0.69	9.0	4	11;7	4	y	0.00	0.0	2	0;0	2	n	0.00	0.0	5	0;0	5	n	0.00	0.0	4	0;0	4	n	0.00	0.0	4	0;0	4	n	-	-	-	-	-	-	ENSMUSG00000073557.13	Ppp1r12b	chr1	protein_coding	protein phosphatase 1, regulatory subunit 12B
known_NIR_156	chr1	134793698	134797806	-	134793698	134800545	A5SS	ENSMUST00000045665.13	known	1.00	2	0	2	0	n	0.67	2	1	2	1	n	0.50	2	2	2	2	n	0.60	3	2	3	2	n	0.60	3	2	3	2	n	1.00	1	0	1	0	n	0.11	2	16	2	16	y	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	1.00	3	0	3	0	n	ENSMUSG00000073557.13	Ppp1r12b	chr1	protein_coding	protein phosphatase 1, regulatory subunit 12B
known_NIR_157	chr1	135075465	135080209	+	135074838	135080209	A5SS	ENSMUST00000027684.11	known	0.00	0	46	0	46	n	0.06	2	34	2	34	y	0.00	0	104	0	104	n	0.00	0	47	0	47	n	0.00	0	69	0	69	n	0.00	0	43	0	43	n	0.00	0	53	0	53	n	0.00	0	41	0	41	n	0.00	0	41	0	41	n	0.00	0	65	0	65	n	0.00	0	40	0	40	n	0.00	0	65	0	65	n	ENSMUSG00000026426.11	Arl8a	chr1	protein_coding	ADP-ribosylation factor-like 8A
known_NIR_158	chr1	135184964	135185353	-	135185024	135185353	A3SS	ENSMUST00000003135.14	known	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.57	8	6	8	6	y	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.40	4	6	4	6	y	1.00	10	0	10	0	n	0.50	7	7	7	7	y	0.50	3	3	3	3	n	0.50	2	2	2	2	n	0.00	0	2	0	2	n	1.00	2	0	2	0	n	ENSMUSG00000003051.14	Elf3	chr1	protein_coding	E74-like factor 3
known_NIR_159	chr1	135199502	135205127	-	135199502	135200100	5pMXE	ENSMUST00000141092.2	known	0.02	1	44	1	44	n	0.16	8	42	8	42	y	0.16	13	66	13	66	y	0.17	11	54	11	54	y	0.15	15	88	15	88	y	0.10	5	47	5	47	y	0.10	9	78	9	78	y	0.28	11	28	11	28	y	0.09	6	60	6	60	y	0.07	6	83	6	83	y	0.12	9	69	9	69	y	0.10	6	57	6	57	y	ENSMUSG00000041926.16	Rnpep	chr1	protein_coding	arginyl aminopeptidase (aminopeptidase B)
known_NIR_160	chr1	135199502	135205127	-	135199502;135200216	135200100;135205127	ES	ENSMUST00000077340.14	known	0.02	1	46.5	1	44;49	n	0.17	8	38.0	8	42;34	y	0.17	13	64.5	13	66;63	y	0.16	11	56.0	11	54;58	y	0.16	15	81.0	15	88;74	y	0.09	5	51.5	5	47;56	y	0.11	9	72.5	9	78;67	y	0.26	11	31.0	11	28;34	y	0.12	6	45.5	6	60;31	y	0.08	6	72.5	6	83;62	y	0.13	9	59.5	9	69;50	y	0.11	6	51.0	6	57;45	y	ENSMUSG00000041926.16	Rnpep	chr1	protein_coding	arginyl aminopeptidase (aminopeptidase B)
known_NIR_161	chr1	135236936	135237505	-	135236936	135237509	A5SS	ENSMUST00000081104.10	known	0.03	5	149	5	149	y	0.00	0	149	0	149	n	0.03	4	154	4	154	y	0.00	0	134	0	134	n	0.01	3	200	3	200	y	0.00	0	108	0	108	n	0.01	2	207	2	207	y	0.01	1	120	1	120	n	0.01	1	142	1	142	n	0.00	0	192	0	192	n	0.00	0	154	0	154	n	0.01	1	159	1	159	n	ENSMUSG00000062580.10	Timm17a	chr1	protein_coding	translocase of inner mitochondrial membrane 17a
known_NIR_162	chr1	135237608	135241293	-	135237608	135241432	A5SS	ENSMUST00000081104.10	known	0.03	3	104	3	104	y	0.00	0	90	0	90	n	0.00	0	105	0	105	n	0.00	0	94	0	94	n	0.00	0	154	0	154	n	0.00	0	78	0	78	n	0.00	0	146	0	146	n	0.00	0	81	0	81	n	0.00	0	87	0	87	n	0.00	0	115	0	115	n	0.02	2	113	2	113	y	0.00	0	114	0	114	n	ENSMUSG00000062580.10	Timm17a	chr1	protein_coding	translocase of inner mitochondrial membrane 17a
known_NIR_163	chr1	135313215	135313957	-	135313215;135313741	135313665;135313957	ES	ENSMUST00000041023.14	known	0.00	0	43.5	0	51;36	n	0.03	1	29.0	1	36;22	n	0.10	3	28.0	3	34;22	y	0.00	0	35.0	0	47;23	n	0.04	2	42.5	2	57;28	y	0.06	1	14.5	1	14;15	n	0.00	0	41.0	0	56;26	n	0.00	0	27.0	0	35;19	n	0.00	0	26.5	0	30;23	n	0.02	1	40.5	1	51;30	n	0.07	2	26.5	2	33;20	y	0.00	0	31.0	0	33;29	n	ENSMUSG00000041879.14	Ipo9	chr1	protein_coding	importin 9
known_NIR_164	chr1	135348091	135358006	-	135354779	135358006	A3SS&ES	ENSMUST00000161838.8	known	1.00	13	0	13	0	n	0.25	1	3	1	3	n	0.93	13	1	13	1	n	0.88	7	1	7	1	n	0.88	14	2	14	2	y	0.90	9	1	9	1	n	0.75	9	3	9	3	y	0.88	7	1	7	1	n	1.00	6	0	6	0	n	0.82	9	2	9	2	y	0.92	12	1	12	1	n	0.90	9	1	9	1	n	ENSMUSG00000041879.14	Ipo9	chr1	protein_coding	importin 9
known_NIR_165	chr1	135348091;135354779	135354669;135358006	-	135348091	135358006	cassetteExon	ENSMUST00000041023.14	known	0.07	1.0	13	2;0	13	n	0.71	2.5	1	2;3	1	n	0.04	0.5	13	0;1	13	n	0.30	3.0	7	5;1	7	n	0.12	2.0	14	2;2	14	y	0.05	0.5	9	0;1	9	n	0.18	2.0	9	1;3	9	n	0.07	0.5	7	0;1	7	n	0.00	0.0	6	0;0	6	n	0.18	2.0	9	2;2	9	y	0.08	1.0	12	1;1	12	n	0.10	1.0	9	1;1	9	n	ENSMUSG00000041879.14	Ipo9	chr1	protein_coding	importin 9
known_NIR_166	chr1	135777198;135778125	135778117;135778449	+	135777198	135778449	cassetteExon	ENSMUST00000188028.7	known	0.00	0.0	1	0;0	1	n	-	-	-	-	-	-	0.00	0.0	2	0;0	2	n	0.00	0.0	1	0;0	1	n	0.00	0.0	5	0;0	5	n	0.00	0.0	2	0;0	2	n	0.12	2.0	14	2;2	14	y	-	-	-	-	-	-	0.00	0.0	2	0;0	2	n	-	-	-	-	-	-	0.00	0.0	1	0;0	1	n	0.00	0.0	1	0;0	1	n	ENSMUSG00000026414.14	Tnnt2	chr1	protein_coding	troponin T2, cardiac
known_NIR_167	chr1	135945800	135946244	+	135936153	135946244	A5SS	ENSMUST00000165125.8	known	1.00	32	0	32	0	n	1.00	24	0	24	0	n	1.00	23	0	23	0	n	1.00	30	0	30	0	n	1.00	34	0	34	0	n	1.00	11	0	11	0	n	1.00	34	0	34	0	n	1.00	22	0	22	0	n	1.00	20	0	20	0	n	0.96	46	2	46	2	y	1.00	26	0	26	0	n	1.00	19	0	19	0	n	ENSMUSG00000026411.18	Tmem9	chr1	protein_coding	transmembrane protein 9
known_NIR_168	chr1	135945986	135946244	+	135945800	135946244	A5SS	ENSMUST00000063719.15	known	0.03	1	32	1	32	n	0.00	0	24	0	24	n	0.00	0	23	0	23	n	0.03	1	30	1	30	n	0.06	2	34	2	34	y	0.00	0	11	0	11	n	0.03	1	34	1	34	n	0.00	0	22	0	22	n	0.00	0	20	0	20	n	0.00	0	46	0	46	n	0.04	1	26	1	26	n	0.00	0	19	0	19	n	ENSMUSG00000026411.18	Tmem9	chr1	protein_coding	transmembrane protein 9
known_NIR_169	chr1	136202638	136204276	-	136202611	136204276	A3SS	ENSMUST00000048309.12	known	0.00	0	22	0	22	n	0.00	0	10	0	10	n	0.19	7	30	7	30	y	0.09	2	20	2	20	y	0.04	1	27	1	27	n	0.05	1	19	1	19	n	0.00	0	20	0	20	n	0.06	1	17	1	17	n	0.11	2	17	2	17	y	0.08	2	24	2	24	y	0.10	1	9	1	9	n	0.05	1	19	1	19	n	ENSMUSG00000041570.15	Camsap2	chr1	protein_coding	calmodulin regulated spectrin-associated protein family, member 2
known_NIR_170	chr1	136358110	136360050	+	136352622	136360050	A5SS	ENSMUST00000027655.8	known	0.17	2	10	2	10	y	0.00	0	14	0	14	n	0.00	0	18	0	18	n	0.15	2	11	2	11	y	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	25	0	25	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.25	2	6	2	6	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	ENSMUSG00000026404.13	Ddx59	chr1	protein_coding	DEAD box helicase 59
known_NIR_171	chr1	13649790	13651247	-	13649790	13649914	5pMXE	ENSMUST00000185447.2	known	0.00	0	266	0	266	n	0.00	0	186	0	186	n	0.00	0	744	0	744	n	0.00	0	341	0	341	n	0.00	0	557	0	557	n	0.00	2	438	2	438	y	0.00	0	333	0	333	n	0.00	1	458	1	458	n	0.00	1	271	1	271	n	0.00	0	344	0	344	n	0.00	0	288	0	288	n	0.00	0	355	0	355	n	ENSMUSG00000025935.11	Tram1	chr1	protein_coding	translocating chain-associating membrane protein 1
known_NIR_172	chr1	13649790	13651247	-	13649790;13650035	13649914;13651247	ES	ENSMUST00000027068.11	known	0.00	0	267.5	0	266;269	n	0.00	0	179.0	0	186;172	n	0.00	0	671.0	0	744;598	n	0.00	0	327.0	0	341;313	n	0.00	0	541.5	0	557;526	n	0.00	2	428.0	2	438;418	y	0.00	0	309.0	0	333;285	n	0.00	1	470.0	1	458;482	n	0.00	1	251.0	1	271;231	n	0.00	0	320.5	0	344;297	n	0.00	0	263.0	0	288;238	n	0.00	0	332.0	0	355;309	n	ENSMUSG00000025935.11	Tram1	chr1	protein_coding	translocating chain-associating membrane protein 1
known_NIR_173	chr1	136552789	136553006	+	136552789	136553010	A3SS	ENSMUST00000047734.15	known	0.30	3	7	3	7	y	0.00	0	4	0	4	n	0.38	3	5	3	5	n	0.33	6	12	6	12	y	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.36	4	7	4	7	y	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.25	1	3	1	3	n	0.10	1	9	1	9	n	ENSMUSG00000041483.15	Zfp281	chr1	protein_coding	zinc finger protein 281
known_NIR_174	chr1	136611211	136616482	+	136609300	136616482	A5SS	ENSMUST00000180495.8	known	0.86	6	1	6	1	n	0.40	2	3	2	3	n	0.88	23	3	23	3	y	0.67	2	1	2	1	n	0.83	19	4	19	4	y	0.62	8	5	8	5	y	1.00	15	0	15	0	n	1.00	10	0	10	0	n	1.00	1	0	1	0	n	1.00	9	0	9	0	n	0.83	5	1	5	1	n	0.91	10	1	10	1	n	ENSMUSG00000097113.8	Gm19705	chr1	lncRNA	predicted gene, 19705
known_NIR_175	chr1	136876597	136876697	-	136876597	136879840	A5SS	ENSMUST00000027649.14	known	0.00	0	4	0	4	n	0.07	1	13	1	13	n	0.10	2	18	2	18	y	0.00	0	21	0	21	n	0.00	0	28	0	28	n	0.00	0	13	0	13	n	0.00	0	20	0	20	n	0.00	0	24	0	24	n	0.00	0	17	0	17	n	0.00	0	35	0	35	n	0.00	0	19	0	19	n	0.00	0	20	0	20	n	ENSMUSG00000026398.15	Nr5a2	chr1	protein_coding	nuclear receptor subfamily 5, group A, member 2
known_NIR_176	chr1	136876597	136887965	-	136876597;136879902	136879840;136887965	ES	ENSMUST00000027649.14	known	0.17	1	5.0	1	4;6	n	0.00	0	11.0	0	13;9	n	0.00	0	14.0	0	18;10	n	0.00	0	18.0	0	21;15	n	0.00	0	21.0	0	28;14	n	0.08	1	11.0	1	13;9	n	0.05	1	19.5	1	20;19	n	0.12	3	21.5	3	24;19	y	0.06	1	17.0	1	17;17	n	0.09	3	30.0	3	35;25	y	0.00	0	18.0	0	19;17	n	0.12	3	21.0	3	20;22	y	ENSMUSG00000026398.15	Nr5a2	chr1	protein_coding	nuclear receptor subfamily 5, group A, member 2
known_NIR_177	chr1	138414848	138426314	-	138414848	138443363	A5SS	ENSMUST00000027642.5	known	1.00	30	0	30	0	n	1.00	37	0	37	0	n	0.98	109	2	109	2	y	0.95	37	2	37	2	y	0.98	85	2	85	2	y	1.00	58	0	58	0	n	0.99	94	1	94	1	n	1.00	47	0	47	0	n	1.00	46	0	46	0	n	1.00	73	0	73	0	n	1.00	28	0	28	0	n	0.97	64	2	64	2	y	ENSMUSG00000026393.11	Nek7	chr1	protein_coding	NIMA (never in mitosis gene a)-related expressed kinase 7
known_NIR_178	chr1	138430403	138443363	-	138414848	138443363	A3SS	ENSMUST00000027642.5	known	1.00	44	0	44	0	n	1.00	27	0	27	0	n	0.99	139	2	139	2	y	0.98	87	2	87	2	y	0.98	96	2	96	2	y	1.00	58	0	58	0	n	0.99	101	1	101	1	n	1.00	57	0	57	0	n	1.00	60	0	60	0	n	1.00	91	0	91	0	n	1.00	53	0	53	0	n	0.98	85	2	85	2	y	ENSMUSG00000026393.11	Nek7	chr1	protein_coding	NIMA (never in mitosis gene a)-related expressed kinase 7
known_NIR_179	chr1	138781410	138783812	-	138781410	138784319	A5SS	ENSMUST00000112025.3	known	0.02	1	42	1	42	n	0.00	0	35	0	35	n	0.00	0	36	0	36	n	0.00	0	35	0	35	n	0.07	2	25	2	25	y	0.00	0	24	0	24	n	0.06	2	31	2	31	y	0.00	0	14	0	14	n	0.00	0	26	0	26	n	0.00	0	36	0	36	n	0.00	0	33	0	33	n	0.03	1	30	1	30	n	ENSMUSG00000079283.3	2310009B15Rik	chr1	protein_coding	RIKEN cDNA 2310009B15 gene
known_NIR_180	chr1	138982359	138988013	+	138982359;138986864	138986805;138988013	ES	ENSMUST00000200533.5	known	0.00	0	2.0	0	2;2	n	0.00	0	1.5	0	0;3	n	0.09	1	10.0	1	10;10	n	0.33	1	2.0	1	2;2	n	0.16	2	10.5	2	8;13	y	0.08	1	11.5	1	9;14	n	0.00	0	9.5	0	11;8	n	0.22	1	3.5	1	3;4	n	0.20	1	4.0	1	4;4	n	0.22	1	3.5	1	3;4	n	0.00	0	2.0	0	3;1	n	0.00	0	2.5	0	1;4	n	ENSMUSG00000056268.16	Dennd1b	chr1	protein_coding	DENN/MADD domain containing 1B
known_NIR_181	chr1	139445092	139445490	+	139445092	139450081	A3SS	ENSMUST00000027615.7	known	0.01	8	603	8	603	y	0.01	6	605	6	605	y	0.01	2	292	2	292	y	0.00	3	779	3	779	y	0.01	10	808	10	808	y	0.01	2	214	2	214	y	0.01	5	804	5	804	y	0.01	5	333	5	333	y	0.01	5	642	5	642	y	0.00	4	948	4	948	y	0.00	2	685	2	685	y	0.01	8	773	8	773	y	ENSMUSG00000026368.7	F13b	chr1	protein_coding	coagulation factor XIII, beta subunit
known_NIR_182	chr1	139629719;139659444	139659268;139660041	-	139629719	139660041	cassetteExon	ENSMUST00000111986.8	known	0.85	537.0	93	643;431	93	y	0.86	487.5	79	572;403	79	y	0.76	288.5	92	306;271	92	y	0.87	606.0	91	721;491	91	y	0.84	797.0	149	906;688	149	y	0.81	212.0	50	245;179	50	y	0.84	618.5	119	722;515	119	y	0.78	372.5	103	411;334	103	y	0.84	557.0	106	669;445	106	y	0.88	735.0	99	836;634	99	y	0.85	532.5	92	620;445	92	y	0.85	816.0	144	947;685	144	y	ENSMUSG00000070594.11	Cfhr4	chr1	protein_coding	complement factor H-related 4
known_NIR_183	chr1	139660214	139661149	-	139660214;139660987	139660778;139661149	ES	ENSMUST00000111986.8	known	0.00	0	485.5	0	356;615	n	0.00	0	348.0	0	278;418	n	0.01	2	322.0	2	257;387	y	0.01	4	568.5	4	405;732	y	0.00	3	690.5	3	549;832	y	0.02	4	184.5	4	139;230	y	0.01	4	515.5	4	412;619	y	0.00	0	394.5	0	297;492	n	0.01	4	497.5	4	376;619	y	0.00	0	632.0	0	486;778	n	0.00	0	438.0	0	332;544	n	0.00	0	780.0	0	599;961	n	ENSMUSG00000070594.11	Cfhr4	chr1	protein_coding	complement factor H-related 4
known_NIR_184	chr1	139667377	139668153	-	139667380	139668153	A3SS	ENSMUST00000111986.8	known	0.15	56	311	56	311	y	0.15	34	196	34	196	y	0.17	46	219	46	219	y	0.19	121	507	121	507	y	0.16	99	512	99	512	y	0.13	24	154	24	154	y	0.18	83	373	83	373	y	0.17	61	304	61	304	y	0.13	50	341	50	341	y	0.16	105	557	105	557	y	0.15	50	286	50	286	y	0.14	99	587	99	587	y	ENSMUSG00000070594.11	Cfhr4	chr1	protein_coding	complement factor H-related 4
known_NIR_185	chr1	139738757	139741172	-	139733215	139741172	A3SS	ENSMUST00000194186.6	known	1.00	2777	6	2777	6	y	1.00	2500	11	2500	11	y	1.00	1865	0	1865	0	n	1.00	2948	6	2948	6	y	1.00	3774	3	3774	3	y	1.00	1184	2	1184	2	y	1.00	3403	12	3403	12	y	1.00	1948	1	1948	1	n	1.00	2694	3	2694	3	y	1.00	3490	11	3490	11	y	1.00	2872	12	2872	12	y	1.00	3921	5	3921	5	y	ENSMUSG00000033898.18	Cfhr2	chr1	protein_coding	complement factor H-related 2
known_NIR_186	chr1	139750104;139773083	139772910;139786293	-	139750104;139758975	139758802;139786293	MXE	ENSMUST00000194186.6	known	0.14	134.5	807.0	0;269	458;1156	n	0.14	93.0	569.0	1;185	332;806	n	0.16	114.5	602.0	0;229	333;871	n	0.15	184.5	1027.5	2;367	560;1495	y	0.16	236.0	1257.5	2;470	722;1793	y	0.15	71.0	405.5	2;140	226;585	y	0.17	186.5	933.5	1;372	525;1342	n	0.13	107.0	686.0	0;214	365;1007	n	0.15	144.0	814.5	1;287	465;1164	n	0.15	198.0	1106.0	3;393	598;1614	y	0.15	130.5	717.5	2;259	432;1003	y	0.14	222.5	1318.0	0;445	687;1949	n	ENSMUSG00000033898.18	Cfhr2	chr1	protein_coding	complement factor H-related 2
known_NIR_187	chr1	140016578	140028546	-	140016578;140026784	140026608;140028546	ES	ENSMUST00000192880.6	known	0.01	42	4134.5	42	4851;3418	y	0.01	43	4967.5	43	6004;3931	y	0.01	40	5845.0	40	6586;5104	y	0.01	26	4298.5	26	4888;3709	y	0.01	62	8964.5	62	9985;7944	y	0.01	23	3905.5	23	4425;3386	y	0.01	36	5935.0	36	6823;5047	y	0.01	36	4920.5	36	5531;4310	y	0.01	27	3888.5	27	4496;3281	y	0.01	35	5732.5	35	6515;4950	y	0.01	23	3553.0	23	4147;2959	y	0.01	35	4714.0	35	5344;4084	y	ENSMUSG00000026365.16	Cfh	chr1	protein_coding	complement component factor h
known_NIR_188	chr1	140016578	140028546	-	140026784	140028546	A3SS&ES	ENSMUST00000123238.2	known	0.01	42	3418	42	3418	y	0.01	43	3931	43	3931	y	0.01	40	5104	40	5104	y	0.01	26	3709	26	3709	y	0.01	62	7944	62	7944	y	0.01	23	3386	23	3386	y	0.01	36	5047	36	5047	y	0.01	36	4310	36	4310	y	0.01	27	3281	27	3281	y	0.01	35	4950	35	4950	y	0.01	23	2959	23	2959	y	0.01	35	4084	35	4084	y	ENSMUSG00000026365.16	Cfh	chr1	protein_coding	complement component factor h
known_NIR_189	chr1	140016626	140026608	-	140016578	140026608	A3SS	ENSMUST00000192880.6	known	0.00	2	4851	2	4851	y	0.00	0	6004	0	6004	n	0.00	0	6586	0	6586	n	0.00	1	4888	1	4888	n	0.00	9	9985	9	9985	y	0.00	0	4425	0	4425	n	0.00	2	6823	2	6823	y	0.00	0	5531	0	5531	n	0.00	0	4496	0	4496	n	0.00	3	6515	3	6515	y	0.00	2	4147	2	4147	y	0.00	5	5344	5	5344	y	ENSMUSG00000026365.16	Cfh	chr1	protein_coding	complement component factor h
known_NIR_190	chr1	140028722	140029323	-	140028722	140063885	A5SS	ENSMUST00000192880.6	known	1.00	3047	0	3047	0	n	1.00	3118	1	3118	1	n	1.00	4555	0	4555	0	n	1.00	3582	2	3582	2	y	1.00	7026	0	7026	0	n	1.00	2985	0	2985	0	n	1.00	4181	0	4181	0	n	1.00	4099	0	4099	0	n	1.00	2781	0	2781	0	n	1.00	4345	2	4345	2	y	1.00	2466	0	2466	0	n	1.00	3538	1	3538	1	n	ENSMUSG00000026365.16	Cfh	chr1	protein_coding	complement component factor h
known_NIR_191	chr1	140029496	140030446	-	140029496;140030284	140030075;140030446	ES	ENSMUST00000111976.9	known	0.00	4	2207.0	4	1498;2916	y	0.00	6	2120.5	6	1520;2721	y	0.00	5	3446.5	5	2347;4546	y	0.00	4	2650.5	4	1793;3508	y	0.00	6	5077.5	6	3542;6613	y	0.00	3	2095.0	3	1483;2707	y	0.00	6	2984.0	6	2174;3794	y	0.00	6	2996.0	6	2067;3925	y	0.00	6	2032.5	6	1435;2630	y	0.00	9	3129.0	9	2174;4084	y	0.00	0	1653.5	0	1209;2098	n	0.00	1	2678.5	1	1914;3443	n	ENSMUSG00000026365.16	Cfh	chr1	protein_coding	complement component factor h
known_NIR_192	chr1	140036681	140046325	-	140040344	140046325	A3SS&ES	ENSMUST00000111976.9	known	0.01	12	1024	12	1024	y	0.02	11	701	11	701	y	0.02	31	1755	31	1755	y	0.01	20	1409	20	1409	y	0.01	41	2890	41	2890	y	0.01	17	1189	17	1189	y	0.02	26	1507	26	1507	y	0.01	21	1751	21	1751	y	0.02	20	1049	20	1049	y	0.02	41	1613	41	1613	y	0.01	9	764	9	764	y	0.02	28	1464	28	1464	y	ENSMUSG00000026365.16	Cfh	chr1	protein_coding	complement component factor h
known_NIR_193	chr1	140047791	140063885	-	140028722	140063885	A3SS	ENSMUST00000192880.6	known	1.00	1226	0	1226	0	n	1.00	1003	1	1003	1	n	1.00	2522	0	2522	0	n	1.00	2154	2	2154	2	y	1.00	3937	0	3937	0	n	1.00	1574	0	1574	0	n	1.00	1994	0	1994	0	n	1.00	2453	0	2453	0	n	1.00	1360	0	1360	0	n	1.00	2322	2	2322	2	y	1.00	1021	0	1021	0	n	1.00	2013	1	2013	1	n	ENSMUSG00000026365.16	Cfh	chr1	protein_coding	complement component factor h
known_NIR_194	chr1	140378042	140435438	+	140378042;140411971	140411863;140435438	ES	ENSMUST00000120709.8	known	0.00	0	1.0	0	1;1	n	0.22	1	3.5	1	3;4	n	0.12	2	15.0	2	15;15	y	0.00	0	5.0	0	5;5	n	0.14	1	6.0	1	7;5	n	0.00	0	5.0	0	8;2	n	-	-	-	-	-	-	0.00	0	2.0	0	3;1	n	0.00	0	2.5	0	2;3	n	0.00	0	3.5	0	0;7	n	0.00	0	1.0	0	1;1	n	0.40	1	1.5	1	2;1	n	ENSMUSG00000052726.17	Kcnt2	chr1	protein_coding	potassium channel, subfamily T, member 2
known_NIR_195	chr1	140480809	140501333	+	140480809;140498221	140498120;140501333	ES	ENSMUST00000120709.8	known	0.00	0	5.5	0	3;8	n	0.43	3	4.0	3	3;5	y	0.10	2	19.0	2	21;17	y	0.29	2	5.0	2	3;7	y	0.24	3	9.5	3	10;9	y	0.14	1	6.0	1	7;5	n	0.00	0	2.5	0	5;0	n	0.00	0	5.0	0	6;4	n	0.22	1	3.5	1	5;2	n	0.00	0	2.0	0	3;1	n	0.13	1	6.5	1	7;6	n	0.67	2	1.0	2	1;1	n	ENSMUSG00000052726.17	Kcnt2	chr1	protein_coding	potassium channel, subfamily T, member 2
known_NIR_196	chr1	140502595;140506213	140506193;140511757	+	140502595	140511757	cassetteExon	ENSMUST00000120709.8	known	0.00	0.0	4	0;0	4	n	0.27	1.5	4	2;1	4	n	0.52	11.0	10	10;12	10	y	0.30	3.0	7	3;3	7	y	0.06	1.0	16	1;1	16	n	0.17	1.0	5	1;1	5	n	0.40	2.0	3	2;2	3	n	0.00	0.0	11	0;0	11	n	0.67	2.0	1	2;2	1	n	0.00	0.0	6	0;0	6	n	0.11	1.0	8	1;1	8	n	0.00	0.0	6	0;0	6	n	ENSMUSG00000052726.17	Kcnt2	chr1	protein_coding	potassium channel, subfamily T, member 2
known_NIR_197	chr1	143615422	143617386	+	143615496	143617386	A5SS	ENSMUST00000126514.2	known	0.05	3	53	3	53	y	0.07	4	54	4	54	y	0.10	6	57	6	57	y	0.08	4	44	4	44	y	0.15	14	77	14	77	y	0.15	6	33	6	33	y	0.15	10	58	10	58	y	0.24	11	35	11	35	y	0.05	2	41	2	41	y	0.07	5	66	5	66	y	0.03	2	68	2	68	y	0.03	2	77	2	77	y	ENSMUSG00000018196.19	Glrx2	chr1	protein_coding	glutaredoxin 2 (thioltransferase)
known_NIR_198	chr1	143617449	143618380	+	143617449	143620785	A3SS	ENSMUST00000145969.8	known	0.00	0	86	0	86	n	0.00	0	98	0	98	n	0.04	4	101	4	101	y	0.06	4	68	4	68	y	0.00	0	135	0	135	n	0.03	2	59	2	59	y	0.02	2	123	2	123	y	0.00	0	70	0	70	n	0.00	0	75	0	75	n	0.01	1	135	1	135	n	0.00	0	97	0	97	n	0.02	3	126	3	126	y	ENSMUSG00000018196.19	Glrx2	chr1	protein_coding	glutaredoxin 2 (thioltransferase)
known_NIR_199	chr1	143617492	143620785	+	143617449	143620785	A5SS	ENSMUST00000145969.8	known	0.03	3	86	3	86	y	0.02	2	98	2	98	y	0.03	3	101	3	101	y	0.00	0	68	0	68	n	0.01	2	135	2	135	y	0.00	0	59	0	59	n	0.01	1	123	1	123	n	0.00	0	70	0	70	n	0.00	0	75	0	75	n	0.00	0	135	0	135	n	0.04	4	97	4	97	y	0.00	0	126	0	126	n	ENSMUSG00000018196.19	Glrx2	chr1	protein_coding	glutaredoxin 2 (thioltransferase)
known_NIR_200	chr1	143620961	143622246	+	143621832	143622246	5pMXE	ENSMUST00000152435.2	known	1.00	129	0	129	0	n	0.99	111	1	111	1	n	1.00	109	0	109	0	n	1.00	99	0	99	0	n	1.00	143	0	143	0	n	1.00	82	0	82	0	n	0.99	164	2	164	2	y	1.00	82	0	82	0	n	1.00	80	0	80	0	n	1.00	149	0	149	0	n	1.00	145	0	145	0	n	1.00	131	0	131	0	n	ENSMUSG00000018196.19	Glrx2	chr1	protein_coding	glutaredoxin 2 (thioltransferase)
known_NIR_201	chr1	143674231	143675662	+	143674231	143675659	A3SS	ENSMUST00000189936.7	known	0.54	46	39	46	39	y	0.43	32	43	32	43	y	0.54	32	27	32	27	y	0.55	40	33	40	33	y	0.47	42	48	42	48	y	0.59	16	11	16	11	y	0.54	44	38	44	38	y	0.41	17	24	17	24	y	0.53	43	38	43	38	y	0.46	55	65	55	65	y	0.56	53	42	53	42	y	0.53	54	47	54	47	y	ENSMUSG00000018189.13	Uchl5	chr1	protein_coding	ubiquitin carboxyl-terminal esterase L5
known_NIR_202	chr1	143677971;143678815	143678666;143682422	+	143677971	143682422	cassetteExon	ENSMUST00000189936.7	known	0.05	4.0	69	3;5	69	y	0.03	3.0	85	3;3	85	y	0.04	3.0	66	1;5	66	n	0.06	4.0	64	4;4	64	y	0.07	5.5	78	5;6	78	y	0.08	3.0	35	4;2	35	y	0.03	3.0	92	3;3	92	y	0.04	2.0	43	4;0	43	n	0.02	1.5	66	1;2	66	n	0.05	5.5	96	2;9	96	y	0.01	1.0	98	0;2	98	n	0.04	4.5	109	6;3	109	y	ENSMUSG00000018189.13	Uchl5	chr1	protein_coding	ubiquitin carboxyl-terminal esterase L5
known_NIR_203	chr1	150256128	150258019	-	150256128;150257345	150257250;150258019	ES	ENSMUST00000111913.9	known	0.03	2	61.0	2	70;52	y	0.13	7	48.5	7	44;53	y	0.04	6	128.0	6	131;125	y	0.04	4	88.5	4	93;84	y	0.03	4	126.5	4	130;123	y	0.08	8	90.5	8	99;82	y	0.02	2	89.5	2	95;84	y	0.06	6	96.0	6	101;91	y	0.08	6	68.5	6	78;59	y	0.02	2	87.5	2	96;79	y	0.05	3	54.5	3	57;52	y	0.01	1	74.0	1	66;82	n	ENSMUSG00000006010.15	Odr4	chr1	protein_coding	odr4 GPCR localization factor homolog
known_NIR_204	chr1	150264370	150265987	-	150264408	150265987	A3SS	ENSMUST00000111913.9	known	0.17	8	40	8	40	y	0.11	4	31	4	31	y	0.05	5	96	5	96	y	0.10	5	47	5	47	y	0.11	11	91	11	91	y	0.07	5	65	5	65	y	0.12	9	65	9	65	y	0.09	8	78	8	78	y	0.13	8	54	8	54	y	0.12	8	60	8	60	y	0.15	6	35	6	35	y	0.10	6	55	6	55	y	ENSMUSG00000006010.15	Odr4	chr1	protein_coding	odr4 GPCR localization factor homolog
known_NIR_205	chr1	150321714	150321875	+	150321714	150321836	A3SS	ENSMUST00000124973.9	known	0.05	5	92	5	92	y	0.05	4	82	4	82	y	0.08	7	81	7	81	y	0.08	6	73	6	73	y	0.05	6	111	6	111	y	0.00	0	38	0	38	n	0.06	7	101	7	101	y	0.00	0	50	0	50	n	0.05	4	83	4	83	y	0.05	6	107	6	107	y	0.08	8	90	8	90	y	0.05	5	93	5	93	y	ENSMUSG00000006005.19	Tpr	chr1	protein_coding	translocated promoter region, nuclear basket protein
known_NIR_206	chr1	150332088	150333239	-	150332088	150336403	A5SS	ENSMUST00000006171.16	known	0.00	0	120	0	120	n	0.00	0	139	0	139	n	0.01	1	125	1	125	n	0.02	4	183	4	183	y	0.00	0	187	0	187	n	0.00	0	43	0	43	n	0.03	3	116	3	116	y	0.00	0	115	0	115	n	0.00	0	89	0	89	n	0.00	0	167	0	167	n	0.00	0	64	0	64	n	0.03	3	101	3	101	y	ENSMUSG00000006014.17	Prg4	chr1	protein_coding	proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)
known_NIR_207	chr1	150334043	150336403	-	150332088	150336403	A3SS	ENSMUST00000006171.16	known	0.22	33	120	33	120	y	0.17	29	139	29	139	y	0.16	24	125	24	125	y	0.20	45	183	45	183	y	0.25	62	187	62	187	y	0.31	19	43	19	43	y	0.19	27	116	27	116	y	0.21	31	115	31	115	y	0.13	13	89	13	89	y	0.16	32	167	32	167	y	0.19	15	64	15	64	y	0.26	36	101	36	101	y	ENSMUSG00000006014.17	Prg4	chr1	protein_coding	proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)
known_NIR_208	chr1	150336522	150341249	-	150336522;150337970	150337848;150341249	ES	ENSMUST00000006171.16	known	0.05	9	162.5	9	127;198	y	0.13	27	180.5	27	165;196	y	0.07	15	199.0	15	148;250	y	0.11	37	298.5	37	204;393	y	0.09	25	253.0	25	188;318	y	0.12	11	83.0	11	61;105	y	0.16	26	134.5	26	108;161	y	0.08	17	186.5	17	118;255	y	0.12	17	129.0	17	104;154	y	0.09	23	227.0	23	169;285	y	0.09	11	105.5	11	83;128	y	0.13	23	154.5	23	114;195	y	ENSMUSG00000006014.17	Prg4	chr1	protein_coding	proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)
known_NIR_209	chr1	151229844	151231880	+	151229844	151230385	A3SS&ES	ENSMUST00000111887.10	known	0.00	0	159	0	159	n	0.00	0	153	0	153	n	0.00	0	153	0	153	n	0.00	1	235	1	235	n	0.00	0	264	0	264	n	0.00	0	105	0	105	n	0.00	1	231	1	231	n	0.03	4	131	4	131	y	0.00	0	134	0	134	n	0.00	1	221	1	221	n	0.00	0	106	0	106	n	0.01	3	207	3	207	y	ENSMUSG00000023150.15	Ivns1abp	chr1	protein_coding	influenza virus NS1A binding protein
known_NIR_210	chr1	151229844	151231880	+	151229844;151230510	151230385;151231880	ES	ENSMUST00000023918.13	known	0.00	0	145.0	0	159;131	n	0.00	0	127.5	0	153;102	n	0.00	0	118.5	0	153;84	n	0.00	1	205.0	1	235;175	n	0.00	0	235.5	0	264;207	n	0.00	0	85.5	0	105;66	n	0.00	1	217.0	1	231;203	n	0.04	4	106.0	4	131;81	y	0.00	0	115.0	0	134;96	n	0.01	1	196.0	1	221;171	n	0.00	0	102.0	0	106;98	n	0.02	3	188.0	3	207;169	y	ENSMUSG00000023150.15	Ivns1abp	chr1	protein_coding	influenza virus NS1A binding protein
known_NIR_211	chr1	151230510	151230918	+	151230510	151231880	A3SS	ENSMUST00000023918.13	known	0.22	37	131	37	131	y	0.29	41	102	41	102	y	0.48	79	84	79	84	y	0.19	40	175	40	175	y	0.17	42	207	42	207	y	0.29	27	66	27	66	y	0.20	51	203	51	203	y	0.33	40	81	40	81	y	0.25	32	96	32	96	y	0.26	59	171	59	171	y	0.15	17	98	17	98	y	0.15	31	169	31	169	y	ENSMUSG00000023150.15	Ivns1abp	chr1	protein_coding	influenza virus NS1A binding protein
known_NIR_212	chr1	151273102	151278706	-	151273102;151276924	151276831;151278706	ES	ENSMUST00000064771.12	known	0.05	1	20.5	1	19;22	n	0.06	1	16.5	1	16;17	n	0.14	3	19.0	3	15;23	y	0.00	0	23.0	0	24;22	n	0.04	1	26.5	1	24;29	n	0.00	0	19.0	0	18;20	n	0.00	0	22.0	0	13;31	n	0.00	0	9.0	0	8;10	n	0.05	1	19.0	1	19;19	n	0.03	1	30.0	1	31;29	n	0.00	0	16.5	0	22;11	n	0.00	0	35.0	0	38;32	n	ENSMUSG00000052748.15	Swt1	chr1	protein_coding	SWT1 RNA endoribonuclease homolog (S. cerevisiae)
known_NIR_213	chr1	151273102	151278706	-	151276924	151278706	3pMXE	ENSMUST00000129939.2	known	0.04	1	22	1	22	n	0.06	1	17	1	17	n	0.12	3	23	3	23	y	0.00	0	22	0	22	n	0.03	1	29	1	29	n	0.00	0	20	0	20	n	0.00	0	31	0	31	n	0.00	0	10	0	10	n	0.05	1	19	1	19	n	0.03	1	29	1	29	n	0.00	0	11	0	11	n	0.00	0	32	0	32	n	ENSMUSG00000052748.15	Swt1	chr1	protein_coding	SWT1 RNA endoribonuclease homolog (S. cerevisiae)
known_NIR_214	chr1	151283386	151286522	-	151283386	151295851	A5SS	ENSMUST00000129939.2	known	1.00	15	0	15	0	n	0.92	12	1	12	1	n	0.96	26	1	26	1	n	1.00	18	0	18	0	n	0.89	16	2	16	2	y	1.00	7	0	7	0	n	0.94	17	1	17	1	n	1.00	11	0	11	0	n	0.93	14	1	14	1	n	0.92	24	2	24	2	y	0.89	17	2	17	2	y	1.00	15	0	15	0	n	ENSMUSG00000052748.15	Swt1	chr1	protein_coding	SWT1 RNA endoribonuclease homolog (S. cerevisiae)
known_NIR_215	chr1	151288597	151295851	-	151283386	151295851	A3SS	ENSMUST00000129939.2	known	1.00	12	0	12	0	n	0.75	3	1	3	1	n	0.96	23	1	23	1	n	1.00	20	0	20	0	n	0.91	21	2	21	2	y	1.00	5	0	5	0	n	0.86	6	1	6	1	n	1.00	7	0	7	0	n	0.86	6	1	6	1	n	0.89	16	2	16	2	y	0.71	5	2	5	2	n	1.00	16	0	16	0	n	ENSMUSG00000052748.15	Swt1	chr1	protein_coding	SWT1 RNA endoribonuclease homolog (S. cerevisiae)
known_NIR_216	chr1	151304681	151309545	+	151304853	151309545	A5SS	ENSMUST00000188179.7	known	0.00	0	17	0	17	n	0.00	0	19	0	19	n	0.04	1	22	1	22	n	0.03	1	38	1	38	n	0.06	2	33	2	33	y	0.17	3	15	3	15	y	0.06	2	30	2	30	y	0.25	4	12	4	12	y	0.03	1	33	1	33	n	0.04	1	23	1	23	n	0.00	0	24	0	24	n	0.06	2	29	2	29	y	ENSMUSG00000053286.12	Trmt1l	chr1	protein_coding	tRNA methyltransferase 1 like
known_NIR_217	chr1	151319077	151323977	+	151319077	151324005	A3SS	ENSMUST00000065625.12	known	0.00	0	49	0	49	n	0.04	1	25	1	25	n	0.00	0	28	0	28	n	0.05	2	42	2	42	y	0.05	2	38	2	38	y	0.00	0	17	0	17	n	0.00	0	37	0	37	n	0.00	0	15	0	15	n	0.00	0	37	0	37	n	0.00	0	42	0	42	n	0.09	3	29	3	29	y	0.00	0	40	0	40	n	ENSMUSG00000053286.12	Trmt1l	chr1	protein_coding	tRNA methyltransferase 1 like
known_NIR_218	chr1	151680570	151681598	+	151680570	151681601	A3SS	ENSMUST00000188145.7	known	0.05	1	20	1	20	n	0.08	2	23	2	23	y	0.08	8	98	8	98	y	0.00	0	44	0	44	n	0.11	7	58	7	58	y	0.00	0	58	0	58	n	0.00	0	40	0	40	n	0.04	2	55	2	55	y	0.00	0	18	0	18	n	0.07	3	38	3	38	y	0.00	0	28	0	28	n	0.08	3	34	3	34	y	ENSMUSG00000043019.13	Edem3	chr1	protein_coding	ER degradation enhancer, mannosidase alpha-like 3
known_NIR_219	chr1	151681697	151683117	+	151681754	151683117	A5SS	ENSMUST00000188145.7	known	0.09	3	29	3	29	y	0.21	5	19	5	19	y	0.17	17	82	17	82	y	0.04	2	43	2	43	y	0.23	18	60	18	60	y	0.24	13	42	13	42	y	0.15	8	46	8	46	y	0.12	7	53	7	53	y	0.10	2	19	2	19	y	0.11	4	31	4	31	y	0.16	3	16	3	16	y	0.28	11	29	11	29	y	ENSMUSG00000043019.13	Edem3	chr1	protein_coding	ER degradation enhancer, mannosidase alpha-like 3
known_NIR_220	chr1	152499679	152500735	-	152499679	152550611	A5SS	ENSMUST00000111859.8	known	1.00	7	0	7	0	n	1.00	1	0	1	0	n	1.00	8	0	8	0	n	1.00	7	0	7	0	n	1.00	18	0	18	0	n	1.00	6	0	6	0	n	1.00	5	0	5	0	n	1.00	2	0	2	0	n	1.00	4	0	4	0	n	1.00	7	0	7	0	n	0.69	9	4	9	4	y	1.00	4	0	4	0	n	ENSMUSG00000026482.14	Rgl1	chr1	protein_coding	ral guanine nucleotide dissociation stimulator,-like 1
known_NIR_221	chr1	152644684	152650011	+	152644684;152647291	152647115;152650011	ES	ENSMUST00000077755.11	known	0.01	1	184.0	1	166;202	n	0.01	2	148.5	2	109;188	y	0.01	2	297.5	2	254;341	y	0.00	0	191.0	0	165;217	n	0.00	0	254.0	0	221;287	n	0.01	2	136.5	2	120;153	y	0.01	2	210.5	2	182;239	y	0.00	0	144.5	0	131;158	n	0.02	3	125.0	3	104;146	y	0.01	2	237.5	2	204;271	y	0.01	1	166.5	1	143;190	n	0.02	5	205.5	5	170;241	y	ENSMUSG00000008475.14	Arpc5	chr1	protein_coding	actin related protein 2/3 complex, subunit 5
known_NIR_222	chr1	152717344;152719130	152718981;152719787	-	152717344	152719787	cassetteExon	ENSMUST00000073441.13	known	0.05	3.5	70	5;2	70	y	0.02	0.5	26	0;1	26	n	0.07	5.0	64	3;7	64	y	0.07	2.5	33	4;1	33	n	0.06	2.5	36	3;2	36	y	0.06	1.5	25	1;2	25	n	0.03	1.5	46	1;2	46	n	0.07	1.5	21	0;3	21	n	0.10	3.5	31	5;2	31	y	0.04	2.0	48	2;2	48	y	0.08	3.0	36	2;4	36	y	0.04	2.0	50	3;1	50	n	ENSMUSG00000042772.16	Smg7	chr1	protein_coding	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)
known_NIR_223	chr1	152721289	152721870	-	152721346	152721870	A3SS	ENSMUST00000073441.13	known	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.18	4	18	4	18	y	0.12	2	14	2	14	y	0.12	2	15	2	15	y	0.00	0	8	0	8	n	0.44	4	5	4	5	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.08	1	12	1	12	n	0.08	1	12	1	12	n	0.18	2	9	2	9	y	ENSMUSG00000042772.16	Smg7	chr1	protein_coding	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)
known_NIR_224	chr1	152722014	152724485	-	152722014	152724347	A5SS	ENSMUST00000073441.13	known	1.00	19	0	19	0	n	0.77	10	3	10	3	y	0.79	31	8	31	8	y	0.89	31	4	31	4	y	0.84	42	8	42	8	y	0.83	24	5	24	5	y	0.76	22	7	22	7	y	0.85	23	4	23	4	y	0.92	24	2	24	2	y	0.89	34	4	34	4	y	0.96	26	1	26	1	n	0.89	33	4	33	4	y	ENSMUSG00000042772.16	Smg7	chr1	protein_coding	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)
known_NIR_225	chr1	152746542	152753792	-	152746542	152778260	A5SS	ENSMUST00000073441.13	known	0.13	2	13	2	13	y	0.20	1	4	1	4	n	0.25	6	18	6	18	y	0.40	6	9	6	9	y	0.27	7	19	7	19	y	0.12	1	7	1	7	n	0.20	2	8	2	8	y	0.00	0	6	0	6	n	0.08	1	11	1	11	n	0.40	6	9	6	9	y	0.38	5	8	5	8	y	0.29	6	15	6	15	y	ENSMUSG00000042772.16	Smg7	chr1	protein_coding	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)
known_NIR_226	chr1	153345482	153347366	-	153345487	153347366	A3SS	ENSMUST00000186380.7	known	0.00	0	58	0	58	n	0.00	0	24	0	24	n	0.02	2	92	2	92	y	0.00	0	84	0	84	n	0.00	0	107	0	107	n	0.00	0	58	0	58	n	0.00	0	52	0	52	n	0.00	0	51	0	51	n	0.00	0	49	0	49	n	0.00	0	62	0	62	n	0.05	3	52	3	52	y	0.04	3	76	3	76	y	ENSMUSG00000042699.12	Dhx9	chr1	protein_coding	DEAH (Asp-Glu-Ala-His) box polypeptide 9
known_NIR_227	chr1	153351455;153352308	153352170;153353787	-	153351455	153353787	cassetteExon	ENSMUST00000186380.7	known	0.15	5.5	32	7;4	32	y	0.41	5.5	8	6;5	8	y	0.07	5.0	65	8;2	65	y	0.15	9.0	50	7;11	50	y	0.09	6.0	63	7;5	63	y	0.24	8.5	27	8;9	27	y	0.12	5.5	41	6;5	41	y	0.07	3.0	37	4;2	37	y	0.17	4.0	20	5;3	20	y	0.33	14.0	29	15;13	29	y	0.28	7.5	19	6;9	19	y	0.12	5.0	38	8;2	38	y	ENSMUSG00000042699.12	Dhx9	chr1	protein_coding	DEAH (Asp-Glu-Ala-His) box polypeptide 9
known_NIR_228	chr1	153354727	153356878	-	153354724	153356878	A3SS	ENSMUST00000186380.7	known	0.93	13	1	13	1	n	1.00	6	0	6	0	n	0.92	56	5	56	5	y	0.92	24	2	24	2	y	0.90	45	5	45	5	y	0.79	15	4	15	4	y	0.93	26	2	26	2	y	0.66	19	10	19	10	y	0.95	19	1	19	1	n	0.84	21	4	21	4	y	1.00	16	0	16	0	n	0.88	36	5	36	5	y	ENSMUSG00000042699.12	Dhx9	chr1	protein_coding	DEAH (Asp-Glu-Ala-His) box polypeptide 9
known_NIR_229	chr1	153776891	153778680	+	153775805	153778680	A5SS	ENSMUST00000086199.12	known	0.00	5	1150	5	1150	y	0.00	4	919	4	919	y	0.00	1	309	1	309	n	0.00	5	1550	5	1550	y	0.00	2	1258	2	1258	y	0.04	4	110	4	110	y	0.00	2	1434	2	1434	y	0.00	0	175	0	175	n	0.00	1	1013	1	1013	n	0.00	2	1422	2	1422	y	0.00	1	748	1	748	n	0.00	1	919	1	919	n	ENSMUSG00000026473.17	Glul	chr1	protein_coding	glutamate-ammonia ligase (glutamine synthetase)
known_NIR_230	chr1	155073181	155073883	+	155073181	155077686	A3SS	ENSMUST00000027743.13	known	0.36	4	7	4	7	y	0.06	1	16	1	16	n	0.09	3	30	3	30	y	0.00	0	25	0	25	n	0.08	3	34	3	34	y	0.00	0	18	0	18	n	0.10	2	18	2	18	y	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	23	0	23	n	0.10	1	9	1	9	n	0.00	0	10	0	10	n	ENSMUSG00000026470.15	Stx6	chr1	protein_coding	syntaxin 6
known_NIR_231	chr1	155260166	155260357	-	155221400	155260357	A3SS	ENSMUST00000027741.12	known	0.00	0	16	0	16	n	0.15	2	11	2	11	y	0.00	0	23	0	23	n	0.00	0	23	0	23	n	0.00	0	20	0	20	n	0.00	0	20	0	20	n	0.00	0	24	0	24	n	0.00	0	20	0	20	n	0.00	0	14	0	14	n	0.00	0	27	0	27	n	0.00	0	16	0	16	n	0.00	0	18	0	18	n	ENSMUSG00000026469.15	Xpr1	chr1	protein_coding	xenotropic and polytropic retrovirus receptor 1
known_NIR_232	chr1	155443427	155463186	+	155443427	155447944	3pMXE	ENSMUST00000080138.13	known	0.04	4	89	4	89	y	0.04	5	113	5	113	y	0.11	7	56	7	56	y	0.05	3	58	3	58	y	0.06	4	68	4	68	y	0.11	4	32	4	32	y	0.13	13	85	13	85	y	0.11	3	25	3	25	y	0.07	4	53	4	53	y	0.04	4	110	4	110	y	0.04	4	92	4	92	y	0.17	14	67	14	67	y	ENSMUSG00000033701.14	Acbd6	chr1	protein_coding	acyl-Coenzyme A binding domain containing 6
known_NIR_233	chr1	155443427	155463186	+	155443427	155477200	A3SS	ENSMUST00000035560.9	known	0.12	4	28	4	28	y	0.13	5	34	5	34	y	0.15	7	41	7	41	y	0.07	3	38	3	38	y	0.10	4	37	4	37	y	0.18	4	18	4	18	y	0.18	13	58	13	58	y	0.17	3	15	3	15	y	0.10	4	38	4	38	y	0.11	4	34	4	34	y	0.08	4	46	4	46	y	0.25	14	41	14	41	y	ENSMUSG00000033701.14	Acbd6	chr1	protein_coding	acyl-Coenzyme A binding domain containing 6
known_NIR_234	chr1	155443427	155477200	+	155443427	155447944	3pMXE	ENSMUST00000080138.13	known	0.24	28	89	28	89	y	0.23	34	113	34	113	y	0.42	41	56	41	56	y	0.40	38	58	38	58	y	0.35	37	68	37	68	y	0.36	18	32	18	32	y	0.41	58	85	58	85	y	0.38	15	25	15	25	y	0.42	38	53	38	53	y	0.24	34	110	34	110	y	0.33	46	92	46	92	y	0.38	41	67	41	67	y	ENSMUSG00000033701.14	Acbd6	chr1	protein_coding	acyl-Coenzyme A binding domain containing 6
known_NIR_235	chr1	155654597	155655464	-	155654597	155655185	A5SS	ENSMUST00000111764.8	known	1.00	2529	2	2529	2	y	1.00	3109	6	3109	6	y	1.00	3717	0	3717	0	n	1.00	2603	1	2603	1	n	1.00	3662	1	3662	1	n	1.00	2198	2	2198	2	y	1.00	3523	2	3523	2	y	1.00	2010	0	2010	0	n	1.00	1983	0	1983	0	n	1.00	2742	3	2742	3	y	1.00	2341	6	2341	6	y	1.00	2522	0	2522	0	n	ENSMUSG00000033684.15	Qsox1	chr1	protein_coding	quiescin Q6 sulfhydryl oxidase 1
known_NIR_236	chr1	155916748	155916821	+	155911666	155916821	A5SS	ENSMUST00000111754.9	known	0.77	17	5	17	5	y	0.84	16	3	16	3	y	0.91	42	4	42	4	y	0.80	45	11	45	11	y	0.93	64	5	64	5	y	0.86	31	5	31	5	y	0.93	55	4	55	4	y	0.71	17	7	17	7	y	0.82	28	6	28	6	y	0.88	35	5	35	5	y	0.86	32	5	32	5	y	0.88	45	6	45	6	y	ENSMUSG00000050565.17	Tor1aip2	chr1	protein_coding	torsin A interacting protein 2
known_NIR_237	chr1	155916748	155916821	+	155911854	155916821	A5SS	ENSMUST00000111757.10	known	1.00	17	0	17	0	n	1.00	16	0	16	0	n	0.98	42	1	42	1	n	1.00	45	0	45	0	n	1.00	64	0	64	0	n	1.00	31	0	31	0	n	1.00	55	0	55	0	n	1.00	17	0	17	0	n	1.00	28	0	28	0	n	0.95	35	2	35	2	y	1.00	32	0	32	0	n	1.00	45	0	45	0	n	ENSMUSG00000050565.17	Tor1aip2	chr1	protein_coding	torsin A interacting protein 2
known_NIR_238	chr1	155916748	155916821	+	155916748	155935157	A3SS	ENSMUST00000060404.5	known	0.65	17	9	17	9	y	0.84	16	3	16	3	y	0.76	42	13	42	13	y	0.70	45	19	45	19	y	0.80	64	16	64	16	y	0.86	31	5	31	5	y	0.79	55	15	55	15	y	0.71	17	7	17	7	y	0.78	28	8	28	8	y	0.73	35	13	35	13	y	0.82	32	7	32	7	y	0.80	45	11	45	11	y	ENSMUSG00000050565.17	Tor1aip2	chr1	protein_coding	torsin A interacting protein 2
known_NIR_239	chr1	155916748	155927040	+	155916880	155927040	A5SS&ES	ENSMUST00000111757.10	known	0.65	77	42	77	42	y	0.61	44	28	44	28	y	0.54	86	72	86	72	y	0.66	129	67	129	67	y	0.60	126	85	126	85	y	0.58	48	35	48	35	y	0.56	92	72	92	72	y	0.59	54	37	54	37	y	0.58	53	38	53	38	y	0.65	119	65	119	65	y	0.63	72	42	72	42	y	0.57	115	86	115	86	y	ENSMUSG00000050565.17	Tor1aip2	chr1	protein_coding	torsin A interacting protein 2
known_NIR_240	chr1	155916748	155935157	+	155916748	155927040	3pMXE	ENSMUST00000065648.15	known	0.10	9	77	9	77	y	0.06	3	44	3	44	y	0.13	13	86	13	86	y	0.13	19	129	19	129	y	0.11	16	126	16	126	y	0.09	5	48	5	48	y	0.14	15	92	15	92	y	0.11	7	54	7	54	y	0.13	8	53	8	53	y	0.10	13	119	13	119	y	0.09	7	72	7	72	y	0.09	11	115	11	115	y	ENSMUSG00000050565.17	Tor1aip2	chr1	protein_coding	torsin A interacting protein 2
known_NIR_241	chr1	155916748	155935157	+	155927369	155935157	A5SS&ES	ENSMUST00000111757.10	known	0.13	9	60	9	60	y	0.08	3	33	3	33	y	0.10	13	111	13	111	y	0.19	19	83	19	83	y	0.11	16	127	16	127	y	0.07	5	65	5	65	y	0.22	15	54	15	54	y	0.10	7	65	7	65	y	0.16	8	41	8	41	y	0.14	13	83	13	83	y	0.13	7	45	7	45	y	0.12	11	81	11	81	y	ENSMUSG00000050565.17	Tor1aip2	chr1	protein_coding	torsin A interacting protein 2
known_NIR_242	chr1	155916748;155916880	155916821;155927040	+	155916748	155927040	cassetteExon	ENSMUST00000065648.15	known	0.28	29.5	77	17;42	77	y	0.33	22.0	44	16;28	44	y	0.40	57.0	86	42;72	86	y	0.30	56.0	129	45;67	129	y	0.37	74.5	126	64;85	126	y	0.41	33.0	48	31;35	48	y	0.41	63.5	92	55;72	92	y	0.33	27.0	54	17;37	54	y	0.38	33.0	53	28;38	53	y	0.30	50.0	119	35;65	119	y	0.34	37.0	72	32;42	72	y	0.36	65.5	115	45;86	115	y	ENSMUSG00000050565.17	Tor1aip2	chr1	protein_coding	torsin A interacting protein 2
known_NIR_243	chr1	155916748;155927369	155927040;155935157	+	155916748	155935157	cassetteExon	ENSMUST00000060404.5	known	0.88	68.5	9	77;60	9	y	0.93	38.5	3	44;33	3	y	0.88	98.5	13	86;111	13	y	0.85	106.0	19	129;83	19	y	0.89	126.5	16	126;127	16	y	0.92	56.5	5	48;65	5	y	0.83	73.0	15	92;54	15	y	0.89	59.5	7	54;65	7	y	0.85	47.0	8	53;41	8	y	0.89	101.0	13	119;83	13	y	0.89	58.5	7	72;45	7	y	0.90	98.0	11	115;81	11	y	ENSMUSG00000050565.17	Tor1aip2	chr1	protein_coding	torsin A interacting protein 2
known_NIR_244	chr1	156488650	156494169	-	156484166	156494169	A3SS	ENSMUST00000156861.8	known	0.20	2	8	2	8	y	0.00	0	11	0	11	n	0.11	3	24	3	24	y	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.08	1	12	1	12	n	0.29	2	5	2	5	n	0.14	1	6	1	6	n	0.15	2	11	2	11	y	0.12	1	7	1	7	n	0.00	0	7	0	7	n	ENSMUSG00000060519.12	Tor3a	chr1	protein_coding	torsin family 3, member A
known_NIR_245	chr1	156530055	156530808	-	156530055	156533238	A5SS	ENSMUST00000122424.8	known	0.00	0	21	0	21	n	0.00	0	18	0	18	n	0.00	0	29	0	29	n	0.00	0	35	0	35	n	0.00	0	37	0	37	n	0.12	2	15	2	15	y	0.00	0	38	0	38	n	0.00	0	16	0	16	n	0.00	0	25	0	25	n	0.00	0	45	0	45	n	0.13	2	13	2	13	y	0.06	2	30	2	30	y	ENSMUSG00000033557.18	Fam20b	chr1	protein_coding	FAM20B, glycosaminoglycan xylosylkinase
known_NIR_246	chr1	156533737	156546436	-	156533737	156544458	5pMXE	ENSMUST00000147931.2	known	0.19	4	17	4	17	y	0.09	1	10	1	10	n	0.17	3	15	3	15	y	0.20	4	16	4	16	y	0.23	7	24	7	24	y	0.27	3	8	3	8	y	0.19	4	17	4	17	y	0.36	5	9	5	9	y	0.15	2	11	2	11	y	0.24	7	22	7	22	y	0.00	0	10	0	10	n	0.12	3	21	3	21	y	ENSMUSG00000033557.18	Fam20b	chr1	protein_coding	FAM20B, glycosaminoglycan xylosylkinase
known_NIR_247	chr1	156533737	156546436	-	156533737;156544550	156544458;156546436	ES	ENSMUST00000122424.8	known	0.28	4	10.5	4	17;4	y	0.12	1	7.0	1	10;4	n	0.20	3	12.0	3	15;9	y	0.27	4	11.0	4	16;6	y	0.30	7	16.5	7	24;9	y	0.27	3	8.0	3	8;8	y	0.24	4	13.0	4	17;9	y	0.32	5	10.5	5	9;12	y	0.25	2	6.0	2	11;1	n	0.35	7	13.0	7	22;4	y	0.00	0	8.0	0	10;6	n	0.17	3	15.0	3	21;9	y	ENSMUSG00000033557.18	Fam20b	chr1	protein_coding	FAM20B, glycosaminoglycan xylosylkinase
known_NIR_248	chr1	156647488	156651561	-	156647488;156649034	156648957;156651561	ES	ENSMUST00000172057.8	known	0.12	2	15.0	2	19;11	y	0.14	2	12.5	2	12;13	y	0.20	4	16.0	4	18;14	y	0.07	1	14.0	1	18;10	n	0.00	0	28.5	0	26;31	n	0.00	0	13.5	0	13;14	n	0.15	4	23.0	4	22;24	y	0.24	3	9.5	3	13;6	y	0.15	2	11.0	2	13;9	y	0.00	0	30.5	0	36;25	n	0.00	0	20.0	0	18;22	n	0.05	1	19.0	1	22;16	n	ENSMUSG00000026594.15	Ralgps2	chr1	protein_coding	Ral GEF with PH domain and SH3 binding motif 2
known_NIR_249	chr1	156715600;156720582	156720478;156728156	-	156715600	156728156	cassetteExon	ENSMUST00000172057.8	known	0.05	0.5	10	1;0	10	n	0.18	2.0	9	3;1	9	n	0.06	1.5	24	0;3	24	n	0.07	1.5	20	1;2	20	n	0.12	3.5	25	0;7	25	n	0.10	1.5	13	1;2	13	n	0.10	1.5	14	2;1	14	n	0.14	1.5	9	1;2	9	n	0.09	1.5	15	0;3	15	n	0.16	5.0	26	4;6	26	y	0.21	3.0	11	3;3	11	y	0.03	1.0	31	1;1	31	n	ENSMUSG00000026594.15	Ralgps2	chr1	protein_coding	Ral GEF with PH domain and SH3 binding motif 2
known_NIR_250	chr1	156728206;156729460	156729356;156735209	-	156728206	156735209	cassetteExon	ENSMUST00000172057.8	known	1.00	17.0	0	19;15	0	n	1.00	10.5	0	12;9	0	n	1.00	27.0	0	28;26	0	n	1.00	26.0	0	24;28	0	n	0.93	25.5	2	25;26	2	y	1.00	17.5	0	19;16	0	n	1.00	18.5	0	23;14	0	n	1.00	17.0	0	17;17	0	n	1.00	15.0	0	14;16	0	n	1.00	29.0	0	26;32	0	n	0.92	11.0	1	6;16	1	n	1.00	39.0	0	30;48	0	n	ENSMUSG00000026594.15	Ralgps2	chr1	protein_coding	Ral GEF with PH domain and SH3 binding motif 2
known_NIR_251	chr1	157057715	157084128	-	157057715	157114301	A5SS	ENSMUST00000078308.13	known	0.00	0	5	0	5	n	-	-	-	-	-	-	0.25	1	3	1	3	n	1.00	4	0	4	0	n	0.62	5	3	5	3	n	0.86	6	1	6	1	n	0.20	1	4	1	4	n	0.73	8	3	8	3	y	0.25	1	3	1	3	n	0.56	5	4	5	4	n	0.00	0	2	0	2	n	0.71	5	2	5	2	n	ENSMUSG00000070565.12	Rasal2	chr1	protein_coding	RAS protein activator like 2
known_NIR_252	chr1	157289619	157292535	+	157289619;157292037	157291979;157292535	ES	ENSMUST00000193791.6	known	0.00	0	45.0	0	44;46	n	0.02	1	40.5	1	43;38	n	0.00	0	51.0	0	51;51	n	0.00	0	66.5	0	60;73	n	0.00	0	76.0	0	68;84	n	0.05	2	38.0	2	44;32	y	0.00	0	54.0	0	53;55	n	0.00	0	43.0	0	35;51	n	0.00	0	43.0	0	46;40	n	0.00	0	89.0	0	79;99	n	0.00	0	36.0	0	35;37	n	0.00	0	64.0	0	56;72	n	ENSMUSG00000033488.12	Cryzl2	chr1	protein_coding	crystallin zeta like 2
known_NIR_253	chr1	157294817	157298186	+	157294817	157316013	A3SS	ENSMUST00000193791.6	known	0.89	67	8	67	8	y	0.96	54	2	54	2	y	0.95	62	3	62	3	y	0.89	56	7	56	7	y	0.81	64	15	64	15	y	0.88	42	6	42	6	y	0.91	90	9	90	9	y	0.94	50	3	50	3	y	0.96	69	3	69	3	y	0.89	94	12	94	12	y	0.90	65	7	65	7	y	0.94	68	4	68	4	y	ENSMUSG00000033488.12	Cryzl2	chr1	protein_coding	crystallin zeta like 2
known_NIR_254	chr1	157299986	157316013	+	157294817	157316013	A5SS	ENSMUST00000193791.6	known	0.88	61	8	61	8	y	0.97	61	2	61	2	y	0.94	46	3	46	3	y	0.90	62	7	62	7	y	0.81	64	15	64	15	y	0.89	49	6	49	6	y	0.88	68	9	68	9	y	0.92	35	3	35	3	y	0.94	51	3	51	3	y	0.89	96	12	96	12	y	0.90	64	7	64	7	y	0.95	73	4	73	4	y	ENSMUSG00000033488.12	Cryzl2	chr1	protein_coding	crystallin zeta like 2
known_NIR_255	chr1	157353794	157356734	+	157352423	157356734	A5SS	ENSMUST00000086130.9	known	1.00	63	0	63	0	n	1.00	30	0	30	0	n	1.00	44	0	44	0	n	0.98	92	2	92	2	y	0.98	104	2	104	2	y	0.87	26	4	26	4	y	0.97	65	2	65	2	y	0.94	46	3	46	3	y	0.99	68	1	68	1	n	0.95	83	4	83	4	y	0.97	30	1	30	1	n	1.00	81	0	81	0	n	ENSMUSG00000026589.15	Sec16b	chr1	protein_coding	SEC16 homolog B (S. cerevisiae)
known_NIR_256	chr1	15883386	15889158	+	15883386;15886196	15886110;15889158	ES	ENSMUST00000188371.7	known	0.29	6	14.5	6	12;17	y	0.18	4	18.5	4	19;18	y	0.00	0	24.5	0	23;26	n	0.03	1	32.0	1	35;29	n	0.09	3	29.0	3	28;30	y	0.11	1	8.0	1	8;8	n	0.00	0	30.0	0	27;33	n	0.30	3	7.0	3	8;6	y	0.04	1	21.5	1	20;23	n	0.10	4	35.5	4	26;45	y	0.05	1	19.5	1	20;19	n	0.04	1	25.0	1	23;27	n	ENSMUSG00000025925.15	Terf1	chr1	protein_coding	telomeric repeat binding factor 1
known_NIR_257	chr1	15889987	15892141	+	15889987	15901731	A3SS	ENSMUST00000188371.7	known	0.14	4	24	4	24	y	0.10	3	26	3	26	y	0.15	3	17	3	17	y	0.03	1	38	1	38	n	0.07	2	27	2	27	y	0.00	0	18	0	18	n	0.12	5	38	5	38	y	0.11	2	17	2	17	y	0.00	0	31	0	31	n	0.00	0	54	0	54	n	0.06	2	34	2	34	y	0.17	7	34	7	34	y	ENSMUSG00000025925.15	Terf1	chr1	protein_coding	telomeric repeat binding factor 1
known_NIR_258	chr1	159067191;159072256	159072159;159076772	+	159067191	159076772	cassetteExon	ENSMUST00000195800.6	known	1.00	59.5	0	56;63	0	n	1.00	49.0	0	52;46	0	n	0.97	74.5	2	74;75	2	y	0.96	68.0	3	70;66	3	y	0.99	98.5	1	108;89	1	n	0.95	40.0	2	42;38	2	y	0.97	84.0	3	85;83	3	y	0.98	50.5	1	46;55	1	n	0.95	60.5	3	58;63	3	y	1.00	85.5	0	73;98	0	n	1.00	57.0	0	56;58	0	n	0.99	74.0	1	81;67	1	n	ENSMUSG00000040782.13	Cop1	chr1	protein_coding	COP1, E3 ubiquitin ligase
known_NIR_259	chr1	159076848	159077593	+	159076836	159077593	A5SS	ENSMUST00000195800.6	known	0.60	50	33	50	33	y	0.33	15	30	15	30	y	0.59	47	33	47	33	y	0.53	43	38	43	38	y	0.56	74	58	74	58	y	0.60	33	22	33	22	y	0.57	59	45	59	45	y	0.50	30	30	30	30	y	0.50	33	33	33	33	y	0.55	72	59	72	59	y	0.69	71	32	71	32	y	0.67	85	41	85	41	y	ENSMUSG00000040782.13	Cop1	chr1	protein_coding	COP1, E3 ubiquitin ligase
known_NIR_260	chr1	159086312	159094327	+	159080186	159094327	A5SS	ENSMUST00000076894.11	known	0.02	2	79	2	79	y	0.06	4	67	4	67	y	0.03	3	109	3	109	y	0.03	3	91	3	91	y	0.03	3	107	3	107	y	0.05	3	54	3	54	y	0.04	4	107	4	107	y	0.04	2	54	2	54	y	0.02	2	80	2	80	y	0.07	8	115	8	115	y	0.07	6	80	6	80	y	0.08	9	105	9	105	y	ENSMUSG00000040782.13	Cop1	chr1	protein_coding	COP1, E3 ubiquitin ligase
known_NIR_261	chr1	159136534	159147318	+	159136534	159147294	A3SS	ENSMUST00000076894.11	known	0.00	0	151	0	151	n	0.02	2	113	2	113	y	0.01	2	136	2	136	y	0.00	0	134	0	134	n	0.01	2	160	2	160	y	0.00	0	61	0	61	n	0.01	1	159	1	159	n	0.00	0	76	0	76	n	0.00	0	94	0	94	n	0.00	0	156	0	156	n	0.01	1	119	1	119	n	0.00	0	163	0	163	n	ENSMUSG00000040782.13	Cop1	chr1	protein_coding	COP1, E3 ubiquitin ligase
known_NIR_262	chr1	159898373	159902601	+	159898373	159898997	3pMXE	ENSMUST00000168250.8	known	1.00	5	0	5	0	n	1.00	10	0	10	0	n	0.50	2	2	2	2	n	1.00	21	0	21	0	n	0.88	15	2	15	2	y	1.00	5	0	5	0	n	0.92	12	1	12	1	n	1.00	2	0	2	0	n	1.00	8	0	8	0	n	1.00	15	0	15	0	n	0.93	13	1	13	1	n	1.00	10	0	10	0	n	ENSMUSG00000090394.9	4930523C07Rik	chr1	protein_coding	RIKEN cDNA 4930523C07 gene
known_NIR_263	chr1	160023115	160024516	+	160022881	160024516	A5SS	ENSMUST00000135680.8	known	0.01	3	217	3	217	y	0.00	0	211	0	211	n	0.07	15	211	15	211	y	0.03	6	220	6	220	y	0.02	5	255	5	255	y	0.03	4	124	4	124	y	0.01	4	267	4	267	y	0.03	5	147	5	147	y	0.03	6	212	6	212	y	0.05	12	251	12	251	y	0.03	8	271	8	271	y	0.03	6	234	6	234	y	ENSMUSG00000058267.14	Mrps14	chr1	protein_coding	mitochondrial ribosomal protein S14
known_NIR_264	chr1	160084836	160085013	-	160075139	160085013	A3SS	ENSMUST00000028052.12	known	0.56	14	11	14	11	y	0.43	9	12	9	12	y	0.18	6	27	6	27	y	0.34	12	23	12	23	y	0.39	15	23	15	23	y	0.23	7	24	7	24	y	0.49	20	21	20	21	y	0.45	10	12	10	12	y	0.57	16	12	16	12	y	0.31	17	37	17	37	y	0.41	9	13	9	13	y	0.26	10	28	10	28	y	ENSMUSG00000026721.17	Rabgap1l	chr1	protein_coding	RAB GTPase activating protein 1-like
known_NIR_265	chr1	160085105	160134746	-	160085105	160169606	A5SS	ENSMUST00000028052.12	known	0.00	0	31	0	31	n	0.00	0	27	0	27	n	0.00	0	35	0	35	n	0.00	0	27	0	27	n	0.00	0	37	0	37	n	0.00	0	19	0	19	n	0.00	0	25	0	25	n	0.00	0	14	0	14	n	0.03	1	32	1	32	n	0.00	0	37	0	37	n	0.00	0	48	0	48	n	0.06	2	29	2	29	y	ENSMUSG00000026721.17	Rabgap1l	chr1	protein_coding	RAB GTPase activating protein 1-like
known_NIR_266	chr1	160806285	160815011	+	160812420	160815011	5pMXE	ENSMUST00000194592.2	known	0.76	13	4	13	4	y	0.65	15	8	15	8	y	0.76	13	4	13	4	y	0.74	35	12	35	12	y	0.82	36	8	36	8	y	1.00	15	0	15	0	n	0.63	27	16	27	16	y	0.83	10	2	10	2	y	0.89	40	5	40	5	y	0.78	64	18	64	18	y	0.79	31	8	31	8	y	0.78	43	12	43	12	y	ENSMUSG00000026715.13	Serpinc1	chr1	protein_coding	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
known_NIR_267	chr1	160806285	160815102	+	160806285	160815011	A3SS	ENSMUST00000064725.11	known	0.00	0	13	0	13	n	0.00	0	15	0	15	n	0.07	1	13	1	13	n	0.00	0	35	0	35	n	0.00	0	36	0	36	n	0.06	1	15	1	15	n	0.00	0	27	0	27	n	0.00	0	10	0	10	n	0.00	0	40	0	40	n	0.10	7	64	7	64	y	0.03	1	31	1	31	n	0.00	0	43	0	43	n	ENSMUSG00000026715.13	Serpinc1	chr1	protein_coding	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
known_NIR_268	chr1	160806285	160816949	+	160815153	160816949	5pMXE	ENSMUST00000194777.2	known	0.00	8	5286	8	5286	y	0.00	16	5153	16	5153	y	0.00	9	4923	9	4923	y	0.00	23	7072	23	7072	y	0.00	17	8332	17	8332	y	0.00	8	3335	8	3335	y	0.00	26	6667	26	6667	y	0.00	7	4602	7	4602	y	0.00	19	6140	19	6140	y	0.00	14	8075	14	8075	y	0.00	12	5957	12	5957	y	0.00	15	8379	15	8379	y	ENSMUSG00000026715.13	Serpinc1	chr1	protein_coding	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
known_NIR_269	chr1	160806285;160812420	160812367;160815011	+	160806285	160815011	cassetteExon	ENSMUST00000064725.11	known	0.33	6.5	13	9;4	13	y	0.36	8.5	15	9;8	15	y	0.24	4.0	13	4;4	13	y	0.28	13.5	35	15;12	35	y	0.29	14.5	36	21;8	36	y	0.06	1.0	15	2;0	15	n	0.36	15.5	27	15;16	27	y	0.09	1.0	10	0;2	10	n	0.15	7.0	40	9;5	40	y	0.26	22.0	64	26;18	64	y	0.26	11.0	31	14;8	31	y	0.27	16.0	43	20;12	43	y	ENSMUSG00000026715.13	Serpinc1	chr1	protein_coding	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
known_NIR_270	chr1	160806285;160812420	160812367;160816949	+	160806285	160816949	cassetteExon	ENSMUST00000195438.6	known	0.59	11.5	8	9;14	8	y	0.36	9.0	16	9;9	16	y	0.38	5.5	9	4;7	9	y	0.39	14.5	23	15;14	23	y	0.54	20.0	17	21;19	17	y	0.11	1.0	8	2;0	8	n	0.37	15.0	26	15;15	26	y	0.12	1.0	7	0;2	7	n	0.37	11.0	19	9;13	19	y	0.59	20.5	14	26;15	14	y	0.57	16.0	12	14;18	12	y	0.45	12.5	15	20;5	15	y	ENSMUSG00000026715.13	Serpinc1	chr1	protein_coding	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
known_NIR_271	chr1	160806285;160812420	160812367;160816949	+	160806285;160815153	160815011;160816949	MXE	ENSMUST00000064725.11	known	0.00	11.5	2649.5	9;14	13;5286	y	0.00	9.0	2584.0	9;9	15;5153	y	0.00	5.5	2468.0	4;7	13;4923	y	0.00	14.5	3553.5	15;14	35;7072	y	0.00	20.0	4184.0	21;19	36;8332	y	0.00	1.0	1675.0	2;0	15;3335	n	0.00	15.0	3347.0	15;15	27;6667	y	0.00	1.0	2306.0	0;2	10;4602	n	0.00	11.0	3090.0	9;13	40;6140	y	0.01	20.5	4069.5	26;15	64;8075	y	0.01	16.0	2994.0	14;18	31;5957	y	0.00	12.5	4211.0	20;5	43;8379	y	ENSMUSG00000026715.13	Serpinc1	chr1	protein_coding	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
known_NIR_272	chr1	160806285;160815153	160815011;160816949	+	160806285	160816949	cassetteExon	ENSMUST00000195438.6	known	1.00	2649.5	8	13;5286	8	y	0.99	2584.0	16	15;5153	16	y	1.00	2468.0	9	13;4923	9	y	0.99	3553.5	23	35;7072	23	y	1.00	4184.0	17	36;8332	17	y	1.00	1675.0	8	15;3335	8	y	0.99	3347.0	26	27;6667	26	y	1.00	2306.0	7	10;4602	7	y	0.99	3090.0	19	40;6140	19	y	1.00	4069.5	14	64;8075	14	y	1.00	2994.0	12	31;5957	12	y	1.00	4211.0	15	43;8379	15	y	ENSMUSG00000026715.13	Serpinc1	chr1	protein_coding	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
known_NIR_273	chr1	160806285;160815153	160815102;160816949	+	160806285	160816949	cassetteExon	ENSMUST00000195438.6	known	1.00	2643.0	8	0;5286	8	n	0.99	2576.5	16	0;5153	16	n	1.00	2462.0	9	1;4923	9	n	0.99	3536.0	23	0;7072	23	n	1.00	4166.0	17	0;8332	17	n	1.00	1668.0	8	1;3335	8	n	0.99	3333.5	26	0;6667	26	n	1.00	2301.0	7	0;4602	7	n	0.99	3070.0	19	0;6140	19	n	1.00	4041.0	14	7;8075	14	y	1.00	2979.0	12	1;5957	12	n	1.00	4189.5	15	0;8379	15	n	ENSMUSG00000026715.13	Serpinc1	chr1	protein_coding	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
known_NIR_274	chr1	160806285;160815153	160815102;160816949	+	160806285;160812420	160812367;160816949	MXE	ENSMUST00000191936.2	known	1.00	2643.0	11.5	0;5286	9;14	n	1.00	2576.5	9.0	0;5153	9;9	n	1.00	2462.0	5.5	1;4923	4;7	n	1.00	3536.0	14.5	0;7072	15;14	n	1.00	4166.0	20.0	0;8332	21;19	n	1.00	1668.0	1.0	1;3335	2;0	n	1.00	3333.5	15.0	0;6667	15;15	n	1.00	2301.0	1.0	0;4602	0;2	n	1.00	3070.0	11.0	0;6140	9;13	n	0.99	4041.0	20.5	7;8075	26;15	y	0.99	2979.0	16.0	1;5957	14;18	n	1.00	4189.5	12.5	0;8379	20;5	n	ENSMUSG00000026715.13	Serpinc1	chr1	protein_coding	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
known_NIR_275	chr1	160812420	160816949	+	160815153	160816949	5pMXE	ENSMUST00000194777.2	known	0.00	14	5286	14	5286	y	0.00	9	5153	9	5153	y	0.00	7	4923	7	4923	y	0.00	14	7072	14	7072	y	0.00	19	8332	19	8332	y	0.00	0	3335	0	3335	n	0.00	15	6667	15	6667	y	0.00	2	4602	2	4602	y	0.00	13	6140	13	6140	y	0.00	15	8075	15	8075	y	0.00	18	5957	18	5957	y	0.00	5	8379	5	8379	y	ENSMUSG00000026715.13	Serpinc1	chr1	protein_coding	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
known_NIR_276	chr1	160812420;160815153	160815011;160816949	+	160812420	160816949	cassetteExon	ENSMUST00000191936.2	known	0.99	2645.0	14	4;5286	14	y	1.00	2580.5	9	8;5153	9	y	1.00	2463.5	7	4;4923	7	y	1.00	3542.0	14	12;7072	14	y	1.00	4170.0	19	8;8332	19	y	1.00	1667.5	0	0;3335	0	n	1.00	3341.5	15	16;6667	15	y	1.00	2302.0	2	2;4602	2	y	1.00	3072.5	13	5;6140	13	y	1.00	4046.5	15	18;8075	15	y	0.99	2982.5	18	8;5957	18	y	1.00	4195.5	5	12;8379	5	y	ENSMUSG00000026715.13	Serpinc1	chr1	protein_coding	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
known_NIR_277	chr1	160847976	160859375	-	160847976;160857311	160857212;160859375	ES	ENSMUST00000162226.9	known	0.00	0	6.0	0	8;4	n	0.00	0	10.5	0	13;8	n	0.00	0	11.0	0	19;3	n	0.32	3	6.5	3	8;5	y	0.00	0	10.0	0	12;8	n	0.00	0	3.0	0	5;1	n	0.00	0	6.5	0	7;6	n	0.00	0	7.0	0	9;5	n	0.00	0	4.5	0	5;4	n	0.00	0	8.5	0	9;8	n	0.00	0	5.5	0	5;6	n	0.00	0	4.0	0	3;5	n	ENSMUSG00000043467.20	Zbtb37	chr1	protein_coding	zinc finger and BTB domain containing 37
known_NIR_278	chr1	160860331	160861658	-	160860334	160861658	A3SS	ENSMUST00000162226.9	known	0.33	2	4	2	4	n	-	-	-	-	-	-	0.73	8	3	8	3	y	0.50	2	2	2	2	n	0.57	4	3	4	3	n	1.00	7	0	7	0	n	0.86	6	1	6	1	n	0.60	3	2	3	2	n	0.60	3	2	3	2	n	0.60	3	2	3	2	n	1.00	3	0	3	0	n	0.86	6	1	6	1	n	ENSMUSG00000043467.20	Zbtb37	chr1	protein_coding	zinc finger and BTB domain containing 37
known_NIR_279	chr1	160862289	160863322	+	160862027	160863322	A5SS	ENSMUST00000160152.8	known	0.62	5	3	5	3	n	0.67	2	1	2	1	n	0.33	1	2	1	2	n	0.44	4	5	4	5	n	0.86	6	1	6	1	n	1.00	4	0	4	0	n	0.88	7	1	7	1	n	1.00	7	0	7	0	n	0.29	2	5	2	5	n	0.50	5	5	5	5	y	0.33	2	4	2	4	n	0.80	4	1	4	1	n	ENSMUSG00000053332.14	Gas5	chr1	lncRNA	growth arrest specific 5
known_NIR_280	chr1	160862764	160863322	+	160862027	160863322	A5SS	ENSMUST00000160152.8	known	0.99	214	3	214	3	y	1.00	255	1	255	1	n	0.99	197	2	197	2	y	0.98	243	5	243	5	y	1.00	247	1	247	1	n	1.00	92	0	92	0	n	1.00	313	1	313	1	n	1.00	102	0	102	0	n	0.98	221	5	221	5	y	0.98	310	5	310	5	y	0.99	283	4	283	4	y	1.00	292	1	292	1	n	ENSMUSG00000053332.14	Gas5	chr1	lncRNA	growth arrest specific 5
known_NIR_281	chr1	160862764	160863322	+	160862289	160863322	A5SS	ENSMUST00000161005.8	known	0.98	214	5	214	5	y	0.99	255	2	255	2	y	0.99	197	1	197	1	n	0.98	243	4	243	4	y	0.98	247	6	247	6	y	0.96	92	4	92	4	y	0.98	313	7	313	7	y	0.94	102	7	102	7	y	0.99	221	2	221	2	y	0.98	310	5	310	5	y	0.99	283	2	283	2	y	0.99	292	4	292	4	y	ENSMUSG00000053332.14	Gas5	chr1	lncRNA	growth arrest specific 5
known_NIR_282	chr1	160864422	160864694	+	160864422	160865795	A3SS	ENSMUST00000161005.8	known	0.98	162	4	162	4	y	0.98	175	4	175	4	y	0.96	109	4	109	4	y	0.99	186	1	186	1	n	0.96	132	5	132	5	y	1.00	76	0	76	0	n	0.98	195	4	195	4	y	0.96	64	3	64	3	y	1.00	166	0	166	0	n	0.98	176	3	176	3	y	0.98	201	5	201	5	y	1.00	174	0	174	0	n	ENSMUSG00000053332.14	Gas5	chr1	lncRNA	growth arrest specific 5
known_NIR_283	chr1	160864422	160864858	+	160864422	160865795	A3SS	ENSMUST00000161005.8	known	0.98	262	4	262	4	y	0.99	276	4	276	4	y	0.98	240	4	240	4	y	1.00	233	1	233	1	n	0.98	200	5	200	5	y	1.00	86	0	86	0	n	0.99	300	4	300	4	y	0.98	120	3	120	3	y	1.00	216	0	216	0	n	0.99	359	3	359	3	y	0.98	276	5	276	5	y	1.00	280	0	280	0	n	ENSMUSG00000053332.14	Gas5	chr1	lncRNA	growth arrest specific 5
known_NIR_284	chr1	160864422	160864858	+	160864734	160864858	A5SS	ENSMUST00000161380.8	known	0.61	262	171	262	171	y	0.61	276	180	276	180	y	0.69	240	110	240	110	y	0.53	233	205	233	205	y	0.57	200	149	200	149	y	0.54	86	73	86	73	y	0.59	300	212	300	212	y	0.62	120	74	120	74	y	0.59	216	149	216	149	y	0.69	359	164	359	164	y	0.60	276	184	276	184	y	0.59	280	197	280	197	y	ENSMUSG00000053332.14	Gas5	chr1	lncRNA	growth arrest specific 5
known_NIR_285	chr1	160864422	160865075	+	160864422	160864858	A3SS	ENSMUST00000159404.8	known	0.00	0	262	0	262	n	0.01	3	276	3	276	y	0.01	2	240	2	240	y	0.01	2	233	2	233	y	0.00	1	200	1	200	n	0.03	3	86	3	86	y	0.00	1	300	1	300	n	0.03	4	120	4	120	y	0.00	1	216	1	216	n	0.00	1	359	1	359	n	0.01	3	276	3	276	y	0.00	1	280	1	280	n	ENSMUSG00000053332.14	Gas5	chr1	lncRNA	growth arrest specific 5
known_NIR_286	chr1	160864422	160865075	+	160864885	160865075	A5SS	ENSMUST00000160152.8	known	0.00	0	465	0	465	n	0.01	3	471	3	471	y	0.01	2	397	2	397	y	0.00	2	458	2	458	y	0.00	1	379	1	379	n	0.02	3	183	3	183	y	0.00	1	561	1	561	n	0.02	4	230	4	230	y	0.00	1	401	1	401	n	0.00	1	572	1	572	n	0.01	3	503	3	503	y	0.00	1	521	1	521	n	ENSMUSG00000053332.14	Gas5	chr1	lncRNA	growth arrest specific 5
known_NIR_287	chr1	160864422;160864734	160864694;160864858	+	160864422	160864858	cassetteExon	ENSMUST00000159706.8	known	0.39	166.5	262	162;171	262	y	0.39	177.5	276	175;180	276	y	0.31	109.5	240	109;110	240	y	0.46	195.5	233	186;205	233	y	0.41	140.5	200	132;149	200	y	0.46	74.5	86	76;73	86	y	0.40	203.5	300	195;212	300	y	0.37	69.0	120	64;74	120	y	0.42	157.5	216	166;149	216	y	0.32	170.0	359	176;164	359	y	0.41	192.5	276	201;184	276	y	0.40	185.5	280	174;197	280	y	ENSMUSG00000053332.14	Gas5	chr1	lncRNA	growth arrest specific 5
known_NIR_288	chr1	160864422;160864885	160864694;160865075	+	160864422	160865075	cassetteExon	ENSMUST00000159119.8	known	1.00	313.5	0	162;465	0	n	0.99	323.0	3	175;471	3	y	0.99	253.0	2	109;397	2	y	0.99	322.0	2	186;458	2	y	1.00	255.5	1	132;379	1	n	0.98	129.5	3	76;183	3	y	1.00	378.0	1	195;561	1	n	0.97	147.0	4	64;230	4	y	1.00	283.5	1	166;401	1	n	1.00	374.0	1	176;572	1	n	0.99	352.0	3	201;503	3	y	1.00	347.5	1	174;521	1	n	ENSMUSG00000053332.14	Gas5	chr1	lncRNA	growth arrest specific 5
known_NIR_289	chr1	160864422;160864885	160864858;160865075	+	160864422	160865075	cassetteExon	ENSMUST00000159119.8	known	1.00	363.5	0	262;465	0	n	0.99	373.5	3	276;471	3	y	0.99	318.5	2	240;397	2	y	0.99	345.5	2	233;458	2	y	1.00	289.5	1	200;379	1	n	0.98	134.5	3	86;183	3	y	1.00	430.5	1	300;561	1	n	0.98	175.0	4	120;230	4	y	1.00	308.5	1	216;401	1	n	1.00	465.5	1	359;572	1	n	0.99	389.5	3	276;503	3	y	1.00	400.5	1	280;521	1	n	ENSMUSG00000053332.14	Gas5	chr1	lncRNA	growth arrest specific 5
known_NIR_290	chr1	160865607	160865795	+	160864422	160865795	A5SS	ENSMUST00000161005.8	known	0.99	477	4	477	4	y	0.99	509	4	509	4	y	0.99	421	4	421	4	y	1.00	416	1	416	1	n	0.99	448	5	448	5	y	1.00	190	0	190	0	n	0.99	556	4	556	4	y	0.99	208	3	208	3	y	1.00	438	0	438	0	n	1.00	598	3	598	3	y	0.99	500	5	500	5	y	1.00	547	0	547	0	n	ENSMUSG00000053332.14	Gas5	chr1	lncRNA	growth arrest specific 5
known_NIR_291	chr1	160874499	160878901	-	160874499;160877570	160877508;160878901	ES	ENSMUST00000035430.4	known	0.17	7	35.0	7	38;32	y	0.29	12	30.0	12	37;23	y	0.28	5	13.0	5	10;16	y	0.16	6	32.5	6	32;33	y	0.27	11	30.0	11	29;31	y	0.20	5	19.5	5	17;22	y	0.22	10	35.0	10	34;36	y	0.12	3	22.0	3	20;24	y	0.21	8	30.5	8	26;35	y	0.22	15	52.5	15	55;50	y	0.22	10	35.0	10	31;39	y	0.30	13	31.0	13	35;27	y	ENSMUSG00000026709.11	Dars2	chr1	protein_coding	aspartyl-tRNA synthetase 2 (mitochondrial)
known_NIR_292	chr1	160902500	160905899	+	160902500	160905799	A3SS	ENSMUST00000028035.14	known	0.31	5	11	5	11	y	0.53	8	7	8	7	y	0.20	2	8	2	8	y	0.42	13	18	13	18	y	0.67	14	7	14	7	y	0.43	3	4	3	4	n	0.35	6	11	6	11	y	0.27	6	16	6	16	y	0.40	6	9	6	9	y	0.27	4	11	4	11	y	0.58	15	11	15	11	y	0.30	7	16	7	16	y	ENSMUSG00000026708.17	Cenpl	chr1	protein_coding	centromere protein L
known_NIR_293	chr1	160906050;160907580	160907438;160910478	+	160906050	160910478	cassetteExon	ENSMUST00000028035.14	known	0.21	4.0	15	2;6	15	y	0.11	2.0	17	3;1	17	n	0.30	6.5	15	8;5	15	y	0.09	2.0	21	3;1	21	n	0.12	3.5	26	2;5	26	y	0.26	3.5	10	3;4	10	y	0.06	1.5	23	0;3	23	n	0.37	3.5	6	3;4	6	y	0.08	1.0	11	2;0	11	n	0.09	2.0	20	3;1	20	n	0.17	2.5	12	3;2	12	y	0.18	3.5	16	3;4	16	y	ENSMUSG00000026708.17	Cenpl	chr1	protein_coding	centromere protein L
known_NIR_294	chr1	161071912	161078327	-	161071912	161074827	A5SS&ES	ENSMUST00000071718.12	known	0.00	1	1735	1	1735	n	0.00	1	1500	1	1500	n	0.00	0	1376	0	1376	n	0.00	0	2024	0	2024	n	0.00	0	2014	0	2014	n	0.00	0	780	0	780	n	0.00	3	2227	3	2227	y	0.00	0	955	0	955	n	0.00	0	1723	0	1723	n	0.00	0	2714	0	2714	n	0.00	0	1988	0	1988	n	0.00	1	2116	1	2116	n	ENSMUSG00000026701.16	Prdx6	chr1	protein_coding	peroxiredoxin 6
known_NIR_295	chr1	161071912	161078327	-	161071912	161078592	A5SS	ENSMUST00000192639.6	known	0.03	1	38	1	38	n	0.03	1	35	1	35	n	0.00	0	30	0	30	n	0.00	0	31	0	31	n	0.00	0	44	0	44	n	0.00	0	24	0	24	n	0.06	3	50	3	50	y	0.00	0	18	0	18	n	0.00	0	35	0	35	n	0.00	0	34	0	34	n	0.00	0	48	0	48	n	0.03	1	35	1	35	n	ENSMUSG00000026701.16	Prdx6	chr1	protein_coding	peroxiredoxin 6
known_NIR_296	chr1	161071912	161078592	-	161071912	161074827	A5SS&ES	ENSMUST00000156678.8	known	0.02	38	1735	38	1735	y	0.02	35	1500	35	1500	y	0.02	30	1376	30	1376	y	0.02	31	2024	31	2024	y	0.02	44	2014	44	2014	y	0.03	24	780	24	780	y	0.02	50	2227	50	2227	y	0.02	18	955	18	955	y	0.02	35	1723	35	1723	y	0.01	34	2714	34	2714	y	0.02	48	1988	48	1988	y	0.02	35	2116	35	2116	y	ENSMUSG00000026701.16	Prdx6	chr1	protein_coding	peroxiredoxin 6
known_NIR_297	chr1	161071912	161078592	-	161071912;161074983	161074827;161078592	ES	ENSMUST00000071718.12	known	0.02	38	1558.5	38	1735;1382	y	0.03	35	1318.0	35	1500;1136	y	0.02	30	1275.0	30	1376;1174	y	0.02	31	1880.0	31	2024;1736	y	0.02	44	1899.0	44	2014;1784	y	0.03	24	719.0	24	780;658	y	0.03	50	1950.0	50	2227;1673	y	0.02	18	895.5	18	955;836	y	0.02	35	1497.5	35	1723;1272	y	0.01	34	2465.5	34	2714;2217	y	0.03	48	1778.0	48	1988;1568	y	0.02	35	1902.0	35	2116;1688	y	ENSMUSG00000026701.16	Prdx6	chr1	protein_coding	peroxiredoxin 6
known_NIR_298	chr1	161071912;161074983	161074827;161078327	-	161071912	161078327	cassetteExon	ENSMUST00000156318.8	known	1.00	869.5	1	1735;4	1	n	1.00	751.5	1	1500;3	1	n	1.00	689.0	0	1376;2	0	n	1.00	1014.5	0	2024;5	0	n	1.00	1011.0	0	2014;8	0	n	1.00	391.0	0	780;2	0	n	1.00	1118.0	3	2227;9	3	y	1.00	480.0	0	955;5	0	n	1.00	863.0	0	1723;3	0	n	1.00	1357.0	0	2714;0	0	n	1.00	998.5	0	1988;9	0	n	1.00	1061.5	1	2116;7	1	n	ENSMUSG00000026701.16	Prdx6	chr1	protein_coding	peroxiredoxin 6
known_NIR_299	chr1	161074983	161076929	-	161074983	161078564	A5SS	ENSMUST00000156678.8	known	0.88	36	5	36	5	y	0.81	34	8	34	8	y	0.93	27	2	27	2	y	0.89	42	5	42	5	y	0.92	59	5	59	5	y	0.92	12	1	12	1	n	0.84	52	10	52	10	y	0.78	18	5	18	5	y	0.87	33	5	33	5	y	0.92	70	6	70	6	y	0.94	50	3	50	3	y	0.72	28	11	28	11	y	ENSMUSG00000026701.16	Prdx6	chr1	protein_coding	peroxiredoxin 6
known_NIR_300	chr1	161074983	161078015	-	161074983	161076929	A5SS&ES	ENSMUST00000051925.5	known	0.28	14	36	14	36	y	0.26	12	34	12	34	y	0.10	3	27	3	27	y	0.28	16	42	16	42	y	0.22	17	59	17	59	y	0.25	4	12	4	12	y	0.37	30	52	30	52	y	0.18	4	18	4	18	y	0.34	17	33	17	33	y	0.27	26	70	26	70	y	0.35	27	50	27	50	y	0.33	14	28	14	28	y	ENSMUSG00000026701.16	Prdx6	chr1	protein_coding	peroxiredoxin 6
known_NIR_301	chr1	161074983	161078015	-	161074983	161078564	A5SS	ENSMUST00000156678.8	known	0.74	14	5	14	5	y	0.60	12	8	12	8	y	0.60	3	2	3	2	n	0.76	16	5	16	5	y	0.77	17	5	17	5	y	0.80	4	1	4	1	n	0.75	30	10	30	10	y	0.44	4	5	4	5	n	0.77	17	5	17	5	y	0.81	26	6	26	6	y	0.90	27	3	27	3	y	0.56	14	11	14	11	y	ENSMUSG00000026701.16	Prdx6	chr1	protein_coding	peroxiredoxin 6
known_NIR_302	chr1	161074983	161078015	-	161074983	161078592	A5SS	ENSMUST00000071718.12	known	0.01	14	1382	14	1382	y	0.01	12	1136	12	1136	y	0.00	3	1174	3	1174	y	0.01	16	1736	16	1736	y	0.01	17	1784	17	1784	y	0.01	4	658	4	658	y	0.02	30	1673	30	1673	y	0.00	4	836	4	836	y	0.01	17	1272	17	1272	y	0.01	26	2217	26	2217	y	0.02	27	1568	27	1568	y	0.01	14	1688	14	1688	y	ENSMUSG00000026701.16	Prdx6	chr1	protein_coding	peroxiredoxin 6
known_NIR_303	chr1	161074983	161078327	-	161074983	161076929	A5SS&ES	ENSMUST00000051925.5	known	0.10	4	36	4	36	y	0.08	3	34	3	34	y	0.07	2	27	2	27	y	0.11	5	42	5	42	y	0.12	8	59	8	59	y	0.14	2	12	2	12	y	0.15	9	52	9	52	y	0.22	5	18	5	18	y	0.08	3	33	3	33	y	0.00	0	70	0	70	n	0.15	9	50	9	50	y	0.20	7	28	7	28	y	ENSMUSG00000026701.16	Prdx6	chr1	protein_coding	peroxiredoxin 6
known_NIR_304	chr1	161074983	161078327	-	161074983	161078015	5pMXE	ENSMUST00000139387.8	known	0.22	4	14	4	14	y	0.20	3	12	3	12	y	0.40	2	3	2	3	n	0.24	5	16	5	16	y	0.32	8	17	8	17	y	0.33	2	4	2	4	n	0.23	9	30	9	30	y	0.56	5	4	5	4	n	0.15	3	17	3	17	y	0.00	0	26	0	26	n	0.25	9	27	9	27	y	0.33	7	14	7	14	y	ENSMUSG00000026701.16	Prdx6	chr1	protein_coding	peroxiredoxin 6
known_NIR_305	chr1	161074983	161078327	-	161074983	161078564	A5SS	ENSMUST00000156678.8	known	0.44	4	5	4	5	n	0.27	3	8	3	8	y	0.50	2	2	2	2	n	0.50	5	5	5	5	y	0.62	8	5	8	5	y	0.67	2	1	2	1	n	0.47	9	10	9	10	y	0.50	5	5	5	5	y	0.38	3	5	3	5	n	0.00	0	6	0	6	n	0.75	9	3	9	3	y	0.39	7	11	7	11	y	ENSMUSG00000026701.16	Prdx6	chr1	protein_coding	peroxiredoxin 6
known_NIR_306	chr1	161074983	161078327	-	161074983	161078592	A5SS	ENSMUST00000071718.12	known	0.00	4	1382	4	1382	y	0.00	3	1136	3	1136	y	0.00	2	1174	2	1174	y	0.00	5	1736	5	1736	y	0.00	8	1784	8	1784	y	0.00	2	658	2	658	y	0.01	9	1673	9	1673	y	0.01	5	836	5	836	y	0.00	3	1272	3	1272	y	0.00	0	2217	0	2217	n	0.01	9	1568	9	1568	y	0.00	7	1688	7	1688	y	ENSMUSG00000026701.16	Prdx6	chr1	protein_coding	peroxiredoxin 6
known_NIR_307	chr1	161074983	161078564	-	161074983	161078592	A5SS	ENSMUST00000071718.12	known	0.00	5	1382	5	1382	y	0.01	8	1136	8	1136	y	0.00	2	1174	2	1174	y	0.00	5	1736	5	1736	y	0.00	5	1784	5	1784	y	0.00	1	658	1	658	n	0.01	10	1673	10	1673	y	0.01	5	836	5	836	y	0.00	5	1272	5	1272	y	0.00	6	2217	6	2217	y	0.00	3	1568	3	1568	y	0.01	11	1688	11	1688	y	ENSMUSG00000026701.16	Prdx6	chr1	protein_coding	peroxiredoxin 6
known_NIR_308	chr1	161074983;161077039	161076929;161078592	-	161074983	161078592	cassetteExon	ENSMUST00000071718.12	known	0.03	36.0	1382	36;36	1382	y	0.03	32.5	1136	34;31	1136	y	0.02	23.5	1174	27;20	1174	y	0.03	49.0	1736	42;56	1736	y	0.03	48.5	1784	59;38	1784	y	0.02	13.0	658	12;14	658	y	0.03	48.0	1673	52;44	1673	y	0.02	17.5	836	18;17	836	y	0.02	32.0	1272	33;31	1272	y	0.03	63.5	2217	70;57	2217	y	0.02	39.5	1568	50;29	1568	y	0.02	31.0	1688	28;34	1688	y	ENSMUSG00000026701.16	Prdx6	chr1	protein_coding	peroxiredoxin 6
known_NIR_309	chr1	161077039	161078592	-	161071912	161078592	A3SS	ENSMUST00000192639.6	known	0.49	36	38	36	38	y	0.47	31	35	31	35	y	0.40	20	30	20	30	y	0.64	56	31	56	31	y	0.46	38	44	38	44	y	0.37	14	24	14	24	y	0.47	44	50	44	50	y	0.49	17	18	17	18	y	0.47	31	35	31	35	y	0.63	57	34	57	34	y	0.38	29	48	29	48	y	0.49	34	35	34	35	y	ENSMUSG00000026701.16	Prdx6	chr1	protein_coding	peroxiredoxin 6
known_NIR_310	chr1	161672927	161674774	-	161672927;161673149	161673129;161674774	ES	ENSMUST00000048377.11	known	1.00	7	0.0	7	0;0	n	1.00	6	0.0	6	0;0	n	0.90	43	5.0	43	6;4	y	1.00	16	0.0	16	0;0	n	0.94	16	1.0	16	1;1	n	0.87	24	3.5	24	3;4	y	1.00	14	0.0	14	0;0	n	0.92	22	2.0	22	2;2	y	1.00	5	0.0	5	0;0	n	0.97	14	0.5	14	0;1	n	1.00	9	0.0	9	0;0	n	1.00	13	0.0	13	0;0	n	ENSMUSG00000040297.13	Suco	chr1	protein_coding	SUN domain containing ossification factor
known_NIR_311	chr1	161680504	161681284	-	161680516	161681284	A3SS	ENSMUST00000048377.11	known	0.50	5	5	5	5	y	1.00	3	0	3	0	n	0.43	16	21	16	21	y	0.20	3	12	3	12	y	0.44	12	15	12	15	y	0.52	11	10	11	10	y	0.25	4	12	4	12	y	0.33	4	8	4	8	y	0.00	0	8	0	8	n	0.44	4	5	4	5	n	0.33	2	4	2	4	n	0.27	3	8	3	8	y	ENSMUSG00000040297.13	Suco	chr1	protein_coding	SUN domain containing ossification factor
known_NIR_312	chr1	16173908	16174361	-	16173908	16174589	A5SS	ENSMUST00000058437.14	known	0.00	1	673	1	673	n	0.00	0	648	0	648	n	0.00	0	863	0	863	n	0.00	1	693	1	693	n	0.00	3	945	3	945	y	0.00	0	417	0	417	n	0.00	0	970	0	970	n	0.00	0	485	0	485	n	0.00	0	655	0	655	n	0.00	0	889	0	889	n	0.00	0	805	0	805	n	0.00	2	872	2	872	y	ENSMUSG00000043716.14	Rpl7	chr1	protein_coding	ribosomal protein L7
known_NIR_313	chr1	161796848	161797796	+	161796848	161797809	A3SS	ENSMUST00000111594.3	known	0.26	6	17	6	17	y	0.86	6	1	6	1	n	0.38	8	13	8	13	y	0.23	6	20	6	20	y	0.46	11	13	11	13	y	0.44	4	5	4	5	n	0.41	15	22	15	22	y	0.62	10	6	10	6	y	0.45	10	12	10	12	y	0.44	15	19	15	19	y	0.14	3	18	3	18	y	0.42	13	18	13	18	y	ENSMUSG00000026698.9	Pigc	chr1	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class C
known_NIR_314	chr1	162371954	162373797	-	162371954	162373337	A5SS	ENSMUST00000028017.16	known	0.00	0	9	0	9	n	0.17	1	5	1	5	n	0.08	2	22	2	22	y	0.00	0	14	0	14	n	0.00	0	24	0	24	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.00	0	19	0	19	n	0.00	0	10	0	10	n	0.18	2	9	2	9	y	ENSMUSG00000026694.20	Eef1aknmt	chr1	protein_coding	EEF1A lysine and N-terminal methyltransferase
known_NIR_315	chr1	162398952	162401867	+	162398349	162401867	A5SS	ENSMUST00000132158.8	known	0.00	0	28	0	28	n	0.00	0	16	0	16	n	0.02	1	52	1	52	n	0.05	1	18	1	18	n	0.05	2	35	2	35	y	0.00	0	25	0	25	n	0.00	0	32	0	32	n	0.03	1	28	1	28	n	0.00	0	24	0	24	n	0.00	0	34	0	34	n	0.00	0	21	0	21	n	0.00	0	35	0	35	n	ENSMUSG00000026696.16	Vamp4	chr1	protein_coding	vesicle-associated membrane protein 4
known_NIR_316	chr1	162415819	162417034	+	162415865	162417034	A5SS	ENSMUST00000132158.8	known	0.02	1	50	1	50	n	0.00	0	44	0	44	n	0.05	3	63	3	63	y	0.02	1	40	1	40	n	0.01	1	66	1	66	n	0.05	2	39	2	39	y	0.00	0	78	0	78	n	0.02	1	49	1	49	n	0.00	0	34	0	34	n	0.00	0	62	0	62	n	0.00	0	42	0	42	n	0.02	1	64	1	64	n	ENSMUSG00000026696.16	Vamp4	chr1	protein_coding	vesicle-associated membrane protein 4
known_NIR_317	chr1	162420246	162422115	+	162420246	162424618	A3SS	ENSMUST00000132158.8	known	1.00	39	0	39	0	n	1.00	50	0	50	0	n	1.00	84	0	84	0	n	0.95	40	2	40	2	y	1.00	90	0	90	0	n	1.00	56	0	56	0	n	1.00	70	0	70	0	n	1.00	53	0	53	0	n	1.00	65	0	65	0	n	1.00	56	0	56	0	n	1.00	76	0	76	0	n	0.97	63	2	63	2	y	ENSMUSG00000026696.16	Vamp4	chr1	protein_coding	vesicle-associated membrane protein 4
known_NIR_318	chr1	162501225	162501672	-	162501225	162501668	A5SS	ENSMUST00000182149.8	known	0.00	0	32	0	32	n	0.18	4	18	4	18	y	0.00	0	37	0	37	n	0.00	0	36	0	36	n	0.00	0	28	0	28	n	0.00	0	13	0	13	n	0.07	3	38	3	38	y	0.00	0	13	0	13	n	0.04	1	24	1	24	n	0.20	7	28	7	28	y	0.31	9	20	9	20	y	0.03	1	36	1	36	n	ENSMUSG00000040225.16	Prrc2c	chr1	protein_coding	proline-rich coiled-coil 2C
known_NIR_319	chr1	162501225	162504260	-	162501225;162501720	162501668;162504260	ES	ENSMUST00000182149.8	known	0.23	9	31.0	9	32;30	y	0.32	7	15.0	7	18;12	y	0.27	14	37.0	14	37;37	y	0.20	8	33.0	8	36;30	y	0.31	14	30.5	14	28;33	y	0.23	5	17.0	5	13;21	y	0.36	16	29.0	16	38;20	y	0.42	9	12.5	9	13;12	y	0.27	10	26.5	10	24;29	y	0.14	5	31.0	5	28;34	y	0.16	5	25.5	5	20;31	y	0.22	10	35.0	10	36;34	y	ENSMUSG00000040225.16	Prrc2c	chr1	protein_coding	proline-rich coiled-coil 2C
known_NIR_320	chr1	162501225	162504260	-	162501225;162503410	162503174;162504260	ES	ENSMUST00000182660.8	known	0.64	9	5.0	9	1;9	n	0.61	7	4.5	7	2;7	y	0.48	14	15.0	14	0;30	n	0.43	8	10.5	8	8;13	y	0.67	14	7.0	14	2;12	y	0.45	5	6.0	5	4;8	y	0.73	16	6.0	16	3;9	y	0.53	9	8.0	9	1;15	n	0.71	10	4.0	10	1;7	n	0.36	5	9.0	5	3;15	y	0.40	5	7.5	5	2;13	y	0.49	10	10.5	10	3;18	y	ENSMUSG00000040225.16	Prrc2c	chr1	protein_coding	proline-rich coiled-coil 2C
known_NIR_321	chr1	162501225;162501720	162501668;162503174	-	162501225	162503174	cassetteExon	ENSMUST00000182660.8	known	0.95	20.5	1	32;9	1	n	0.84	10.5	2	18;3	2	y	1.00	24.0	0	37;11	0	n	0.72	20.5	8	36;5	8	y	0.90	19.0	2	28;10	2	y	0.62	6.5	4	13;0	4	n	0.88	21.5	3	38;5	3	y	0.89	8.5	1	13;4	1	n	0.93	14.0	1	24;4	1	n	0.83	15.0	3	28;2	3	y	0.88	15.0	2	20;10	2	y	0.88	21.5	3	36;7	3	y	ENSMUSG00000040225.16	Prrc2c	chr1	protein_coding	proline-rich coiled-coil 2C
known_NIR_322	chr1	162501225;162501720	162501672;162503174	-	162501225	162503174	cassetteExon	ENSMUST00000182660.8	known	0.82	4.5	1	0;9	1	n	0.64	3.5	2	4;3	2	n	1.00	5.5	0	0;11	0	n	0.24	2.5	8	0;5	8	n	0.71	5.0	2	0;10	2	n	0.00	0.0	4	0;0	4	n	0.57	4.0	3	3;5	3	y	0.67	2.0	1	0;4	1	n	0.71	2.5	1	1;4	1	n	0.60	4.5	3	7;2	3	y	0.83	9.5	2	9;10	2	y	0.57	4.0	3	1;7	3	n	ENSMUSG00000040225.16	Prrc2c	chr1	protein_coding	proline-rich coiled-coil 2C
known_NIR_323	chr1	162501225;162501720	162501672;162504260	-	162501225	162504260	cassetteExon	ENSMUST00000183223.8	known	0.62	15.0	9	0;30	9	n	0.53	8.0	7	4;12	7	y	0.57	18.5	14	0;37	14	n	0.65	15.0	8	0;30	8	n	0.54	16.5	14	0;33	14	n	0.68	10.5	5	0;21	5	n	0.42	11.5	16	3;20	16	y	0.40	6.0	9	0;12	9	n	0.60	15.0	10	1;29	10	n	0.80	20.5	5	7;34	5	y	0.80	20.0	5	9;31	5	y	0.64	17.5	10	1;34	10	n	ENSMUSG00000040225.16	Prrc2c	chr1	protein_coding	proline-rich coiled-coil 2C
known_NIR_324	chr1	162501225;162501720	162501672;162504260	-	162501225;162503410	162503174;162504260	MXE	ENSMUST00000182660.8	known	0.75	15.0	5.0	0;30	1;9	n	0.64	8.0	4.5	4;12	2;7	y	0.55	18.5	15.0	0;37	0;30	n	0.59	15.0	10.5	0;30	8;13	n	0.70	16.5	7.0	0;33	2;12	n	0.64	10.5	6.0	0;21	4;8	n	0.66	11.5	6.0	3;20	3;9	y	0.43	6.0	8.0	0;12	1;15	n	0.79	15.0	4.0	1;29	1;7	n	0.69	20.5	9.0	7;34	3;15	y	0.73	20.0	7.5	9;31	2;13	y	0.62	17.5	10.5	1;34	3;18	n	ENSMUSG00000040225.16	Prrc2c	chr1	protein_coding	proline-rich coiled-coil 2C
known_NIR_325	chr1	162501225;162503410	162503174;162504260	-	162501225;162501720	162501668;162504260	MXE	ENSMUST00000182149.8	known	0.14	5.0	31.0	1;9	32;30	n	0.23	4.5	15.0	2;7	18;12	y	0.29	15.0	37.0	0;30	37;37	n	0.24	10.5	33.0	8;13	36;30	y	0.19	7.0	30.5	2;12	28;33	y	0.26	6.0	17.0	4;8	13;21	y	0.17	6.0	29.0	3;9	38;20	y	0.39	8.0	12.5	1;15	13;12	n	0.13	4.0	26.5	1;7	24;29	n	0.23	9.0	31.0	3;15	28;34	y	0.23	7.5	25.5	2;13	20;31	y	0.23	10.5	35.0	3;18	36;34	y	ENSMUSG00000040225.16	Prrc2c	chr1	protein_coding	proline-rich coiled-coil 2C
known_NIR_326	chr1	162501720;162503410	162503174;162504260	-	162501720	162504260	cassetteExon	ENSMUST00000182149.8	known	0.23	9.0	30	9;9	30	y	0.29	5.0	12	3;7	12	y	0.36	20.5	37	11;30	37	y	0.23	9.0	30	5;13	30	y	0.25	11.0	33	10;12	33	y	0.16	4.0	21	0;8	21	n	0.26	7.0	20	5;9	20	y	0.44	9.5	12	4;15	12	y	0.16	5.5	29	4;7	29	y	0.20	8.5	34	2;15	34	y	0.27	11.5	31	10;13	31	y	0.27	12.5	34	7;18	34	y	ENSMUSG00000040225.16	Prrc2c	chr1	protein_coding	proline-rich coiled-coil 2C
known_NIR_327	chr1	162505797	162507054	-	162505797	162507069	A5SS	ENSMUST00000182149.8	known	0.10	5	45	5	45	y	0.12	3	21	3	21	y	0.32	20	43	20	43	y	0.22	8	28	8	28	y	0.17	11	54	11	54	y	0.27	11	30	11	30	y	0.21	9	34	9	34	y	0.16	7	36	7	36	y	0.26	10	29	10	29	y	0.21	13	49	13	49	y	0.21	8	31	8	31	y	0.26	14	39	14	39	y	ENSMUSG00000040225.16	Prrc2c	chr1	protein_coding	proline-rich coiled-coil 2C
known_NIR_328	chr1	162511825	162515685	-	162511825	162519942	A5SS	ENSMUST00000183223.8	known	1.00	23	0	23	0	n	1.00	18	0	18	0	n	1.00	34	0	34	0	n	0.98	42	1	42	1	n	1.00	36	0	36	0	n	0.94	17	1	17	1	n	0.98	45	1	45	1	n	1.00	21	0	21	0	n	1.00	10	0	10	0	n	1.00	32	0	32	0	n	1.00	9	0	9	0	n	0.96	45	2	45	2	y	ENSMUSG00000040225.16	Prrc2c	chr1	protein_coding	proline-rich coiled-coil 2C
known_NIR_329	chr1	162518802	162519942	-	162511825	162519942	A3SS	ENSMUST00000183223.8	known	1.00	23	0	23	0	n	1.00	18	0	18	0	n	1.00	39	0	39	0	n	0.97	31	1	31	1	n	1.00	47	0	47	0	n	0.96	23	1	23	1	n	0.97	30	1	30	1	n	1.00	21	0	21	0	n	1.00	22	0	22	0	n	1.00	30	0	30	0	n	1.00	20	0	20	0	n	0.95	41	2	41	2	y	ENSMUSG00000040225.16	Prrc2c	chr1	protein_coding	proline-rich coiled-coil 2C
known_NIR_330	chr1	162548175	162549014	-	162548175	162548999	A5SS	ENSMUST00000182149.8	known	0.14	1	6	1	6	n	0.43	3	4	3	4	n	0.20	3	12	3	12	y	0.14	1	6	1	6	n	0.15	2	11	2	11	y	0.00	0	6	0	6	n	0.38	3	5	3	5	n	0.20	2	8	2	8	y	0.80	4	1	4	1	n	0.18	2	9	2	9	y	0.00	0	2	0	2	n	0.44	4	5	4	5	n	ENSMUSG00000040225.16	Prrc2c	chr1	protein_coding	proline-rich coiled-coil 2C
known_NIR_331	chr1	162550850	162552273	-	162550856	162552273	A3SS	ENSMUST00000182149.8	known	0.36	4	7	4	7	y	0.00	0	4	0	4	n	0.24	4	13	4	13	y	0.08	1	11	1	11	n	0.25	6	18	6	18	y	0.10	1	9	1	9	n	0.00	0	5	0	5	n	0.14	3	18	3	18	y	0.25	1	3	1	3	n	0.44	4	5	4	5	n	0.43	3	4	3	4	n	0.16	3	16	3	16	y	ENSMUSG00000040225.16	Prrc2c	chr1	protein_coding	proline-rich coiled-coil 2C
known_NIR_332	chr1	162640222	162641270	-	162640222	162641145	5pMXE	ENSMUST00000111525.8	known	0.50	1	1	1	1	n	0.50	2	2	2	2	n	0.68	15	7	15	7	y	0.86	6	1	6	1	n	0.54	7	6	7	6	y	0.71	10	4	10	4	y	0.89	8	1	8	1	n	0.74	17	6	17	6	y	0.45	5	6	5	6	y	0.92	11	1	11	1	n	0.44	4	5	4	5	n	0.92	12	1	12	1	n	ENSMUSG00000026692.13	Fmo4	chr1	protein_coding	flavin containing monooxygenase 4
known_NIR_333	chr1	162657883	162658007	-	162657883	162660532	A5SS	ENSMUST00000046049.14	known	0.00	0	238	0	238	n	0.00	0	230	0	230	n	0.00	0	99	0	99	n	0.00	0	266	0	266	n	0.01	2	398	2	398	y	0.00	0	96	0	96	n	0.01	3	324	3	324	y	0.00	0	160	0	160	n	0.00	0	277	0	277	n	0.00	1	343	1	343	n	0.01	3	364	3	364	y	0.00	1	336	1	336	n	ENSMUSG00000040181.15	Fmo1	chr1	protein_coding	flavin containing monooxygenase 1
known_NIR_334	chr1	162668633	162677631	-	162667329	162677631	A3SS	ENSMUST00000046049.14	known	0.02	3	193	3	193	y	0.00	0	123	0	123	n	0.00	0	85	0	85	n	0.02	4	262	4	262	y	0.01	4	323	4	323	y	0.05	4	83	4	83	y	0.02	5	206	5	206	y	0.01	2	161	2	161	y	0.02	4	212	4	212	y	0.01	2	266	2	266	y	0.02	5	247	5	247	y	0.01	4	310	4	310	y	ENSMUSG00000040181.15	Fmo1	chr1	protein_coding	flavin containing monooxygenase 1
known_NIR_335	chr1	162687131	162687370	-	162687131	162693808	A5SS	ENSMUST00000046049.14	known	0.02	2	117	2	117	y	0.00	0	90	0	90	n	0.28	15	39	15	39	y	0.00	0	183	0	183	n	0.03	8	226	8	226	y	0.13	9	59	9	59	y	0.06	10	151	10	151	y	0.07	9	118	9	118	y	0.00	0	132	0	132	n	0.02	4	191	4	191	y	0.02	3	136	3	136	y	0.02	3	186	3	186	y	ENSMUSG00000040181.15	Fmo1	chr1	protein_coding	flavin containing monooxygenase 1
known_NIR_336	chr1	163222261	163224377	-	163222261	163224381	A5SS	ENSMUST00000045138.6	known	0.43	3	4	3	4	n	0.00	0	6	0	6	n	0.12	1	7	1	7	n	0.22	2	7	2	7	n	0.27	4	11	4	11	y	0.00	0	1	0	1	n	0.10	1	9	1	9	n	0.00	0	4	0	4	n	0.50	2	2	2	2	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	ENSMUSG00000040124.6	Gorab	chr1	protein_coding	golgin, RAB6-interacting
known_NIR_337	chr1	163715874	163743294	+	163715874;163739706	163739641;163743294	ES	ENSMUST00000077642.12	known	1.00	7	0.0	7	0;0	n	0.96	13	0.5	13	1;0	n	0.97	17	0.5	17	0;1	n	0.94	8	0.5	8	0;1	n	0.71	6	2.5	6	3;2	y	1.00	8	0.0	8	0;0	n	0.67	5	2.5	5	2;3	y	0.67	3	1.5	3	1;2	n	0.89	4	0.5	4	0;1	n	1.00	6	0.0	6	0;0	n	0.93	7	0.5	7	0;1	n	0.88	15	2.0	15	2;2	y	ENSMUSG00000026585.14	Kifap3	chr1	protein_coding	kinesin-associated protein 3
known_NIR_338	chr1	163761262	163762262	+	163761262	163762201	A3SS	ENSMUST00000161908.8	known	0.07	2	25	2	25	y	0.33	5	10	5	10	y	0.00	0	27	0	27	n	0.17	4	20	4	20	y	0.17	7	34	7	34	y	0.12	3	23	3	23	y	0.19	7	30	7	30	y	0.00	0	10	0	10	n	0.23	3	10	3	10	y	0.28	11	29	11	29	y	0.18	3	14	3	14	y	0.11	3	24	3	24	y	ENSMUSG00000026584.15	Scyl3	chr1	protein_coding	SCY1-like 3 (S. cerevisiae)
known_NIR_339	chr1	163767552	163768590	+	163767552	163768676	A3SS	ENSMUST00000161908.8	known	0.04	1	24	1	24	n	0.00	0	20	0	20	n	0.10	3	26	3	26	y	0.02	1	41	1	41	n	0.08	3	33	3	33	y	0.26	5	14	5	14	y	0.29	10	24	10	24	y	0.24	5	16	5	16	y	0.07	2	28	2	28	y	0.21	10	38	10	38	y	0.21	5	19	5	19	y	0.07	3	37	3	37	y	ENSMUSG00000026584.15	Scyl3	chr1	protein_coding	SCY1-like 3 (S. cerevisiae)
known_NIR_340	chr1	163772504	163773733	+	163772504	163773772	A3SS	ENSMUST00000161908.8	known	1.00	27	0	27	0	n	1.00	16	0	16	0	n	0.96	22	1	22	1	n	1.00	28	0	28	0	n	0.95	37	2	37	2	y	1.00	22	0	22	0	n	0.97	28	1	28	1	n	0.96	22	1	22	1	n	1.00	27	0	27	0	n	0.94	32	2	32	2	y	1.00	30	0	30	0	n	0.97	32	1	32	1	n	ENSMUSG00000026584.15	Scyl3	chr1	protein_coding	SCY1-like 3 (S. cerevisiae)
known_NIR_341	chr1	163822546	163823483	+	163822640	163823483	A5SS	ENSMUST00000045694.14	known	1.00	3	0	3	0	n	0.50	1	1	1	1	n	0.67	2	1	2	1	n	1.00	14	0	14	0	n	0.62	8	5	8	5	y	0.33	2	4	2	4	n	0.86	6	1	6	1	n	0.00	0	2	0	2	n	0.64	7	4	7	4	y	0.17	1	5	1	5	n	0.50	3	3	3	3	n	0.75	9	3	9	3	y	ENSMUSG00000041396.14	Mettl18	chr1	protein_coding	methyltransferase like 18
known_NIR_342	chr1	164084804	164088361	+	164084918	164088361	A5SS	ENSMUST00000044021.12	known	0.00	0	81	0	81	n	0.00	0	34	0	34	n	0.19	18	75	18	75	y	0.07	9	123	9	123	y	0.08	15	177	15	177	y	0.08	5	59	5	59	y	0.10	13	122	13	122	y	0.07	6	76	6	76	y	0.10	14	123	14	123	y	0.13	25	164	25	164	y	0.07	7	99	7	99	y	0.09	15	147	15	147	y	ENSMUSG00000040918.13	Slc19a2	chr1	protein_coding	solute carrier family 19 (thiamine transporter), member 2
known_NIR_343	chr1	164130289	164134008	-	164130289;164131493	164131473;164134008	ES	ENSMUST00000027866.11	known	0.98	22	0.5	22	0;1	n	0.92	6	0.5	6	0;1	n	0.91	40	4.0	40	2;6	y	0.91	20	2.0	20	1;3	n	1.00	27	0.0	27	0;0	n	0.92	22	2.0	22	2;2	y	0.97	18	0.5	18	0;1	n	0.88	19	2.5	19	3;2	y	1.00	15	0.0	15	0;0	n	0.89	17	2.0	17	2;2	y	1.00	19	0.0	19	0;0	n	1.00	15	0.0	15	0;0	n	ENSMUSG00000026577.14	Blzf1	chr1	protein_coding	basic leucine zipper nuclear factor 1
known_NIR_344	chr1	164130289;164131493	164131417;164134008	-	164130289	164134008	cassetteExon	ENSMUST00000120447.8	known	0.02	0.5	22	0;1	22	n	0.20	1.5	6	2;1	6	n	0.10	4.5	40	3;6	40	y	0.07	1.5	20	0;3	20	n	0.00	0.0	27	0;0	27	n	0.04	1.0	22	0;2	22	n	0.05	1.0	18	1;1	18	n	0.07	1.5	19	1;2	19	n	0.06	1.0	15	2;0	15	n	0.06	1.0	17	0;2	17	n	0.00	0.0	19	0;0	19	n	0.00	0.0	15	0;0	15	n	ENSMUSG00000026577.14	Blzf1	chr1	protein_coding	basic leucine zipper nuclear factor 1
known_NIR_345	chr1	164135819	164140425	+	164135819	164140422	A3SS	ENSMUST00000193808.6	known	0.17	1	5	1	5	n	0.50	9	9	9	9	y	0.67	12	6	12	6	y	0.31	5	11	5	11	y	0.46	6	7	6	7	y	0.00	0	5	0	5	n	0.42	5	7	5	7	y	0.38	3	5	3	5	n	0.00	0	4	0	4	n	0.29	2	5	2	5	n	0.12	1	7	1	7	n	0.36	5	9	5	9	y	ENSMUSG00000026575.16	Nme7	chr1	protein_coding	NME/NM23 family member 7
known_NIR_346	chr1	164175448	164175728	+	164175448	164206928	A3SS	ENSMUST00000193808.6	known	0.00	0	26	0	26	n	0.00	0	27	0	27	n	0.00	0	54	0	54	n	0.00	0	30	0	30	n	0.00	0	29	0	29	n	0.00	0	19	0	19	n	0.00	0	22	0	22	n	0.09	2	21	2	21	y	0.00	0	15	0	15	n	0.00	0	35	0	35	n	0.00	0	20	0	20	n	0.00	0	25	0	25	n	ENSMUSG00000026575.16	Nme7	chr1	protein_coding	NME/NM23 family member 7
known_NIR_347	chr1	165012658	165015817	-	165012658;165015623	165015538;165015817	ES	ENSMUST00000043338.10	known	0.12	6	42.5	6	39;46	y	0.17	7	34.0	7	35;33	y	0.36	22	39.5	22	40;39	y	0.07	5	67.0	5	67;67	y	0.27	21	55.5	21	51;60	y	0.32	13	27.5	13	32;23	y	0.14	10	61.0	10	68;54	y	0.18	8	35.5	8	40;31	y	0.11	5	39.5	5	36;43	y	0.17	15	71.0	15	81;61	y	0.15	6	34.5	6	40;29	y	0.26	17	47.5	17	50;45	y	ENSMUSG00000040848.12	Sft2d2	chr1	protein_coding	SFT2 domain containing 2
known_NIR_348	chr1	165056016	165063947	-	165056016	165064299	A5SS	ENSMUST00000043235.8	known	0.02	1	41	1	41	n	0.10	4	37	4	37	y	0.04	3	64	3	64	y	0.06	3	50	3	50	y	0.03	2	70	2	70	y	0.02	1	44	1	44	n	0.08	5	54	5	54	y	0.07	2	28	2	28	y	0.03	1	38	1	38	n	0.09	5	51	5	51	y	0.02	1	43	1	43	n	0.09	5	51	5	51	y	ENSMUSG00000040843.11	Tiprl	chr1	protein_coding	TIP41, TOR signalling pathway regulator-like (S. cerevisiae)
known_NIR_349	chr1	165056016	165064241	-	165056016	165064299	A5SS	ENSMUST00000043235.8	known	0.05	2	41	2	41	y	0.00	0	37	0	37	n	0.00	0	64	0	64	n	0.04	2	50	2	50	y	0.01	1	70	1	70	n	0.04	2	44	2	44	y	0.07	4	54	4	54	y	0.12	4	28	4	28	y	0.00	0	38	0	38	n	0.02	1	51	1	51	n	0.00	0	43	0	43	n	0.00	0	51	0	51	n	ENSMUSG00000040843.11	Tiprl	chr1	protein_coding	TIP41, TOR signalling pathway regulator-like (S. cerevisiae)
known_NIR_350	chr1	165185115;165195074	165195015;165216227	-	165185115	165216227	cassetteExon	ENSMUST00000027856.13	known	0.25	8.5	25	9;8	25	y	0.18	7.5	35	6;9	35	y	0.43	20.0	27	24;16	27	y	0.24	10.0	32	15;5	32	y	0.27	16.5	44	19;14	44	y	0.10	3.0	26	4;2	26	y	0.28	20.5	53	29;12	53	y	0.38	15.5	25	14;17	25	y	0.33	14.0	28	16;12	28	y	0.24	17.0	55	15;19	55	y	0.35	15.5	29	20;11	29	y	0.30	18.5	44	24;13	44	y	ENSMUSG00000026571.13	Dcaf6	chr1	protein_coding	DDB1 and CUL4 associated factor 6
known_NIR_351	chr1	165195074	165216227	-	165195074;165201804	165201631;165216227	ES	ENSMUST00000194869.6	known	1.00	8	0.0	8	0;0	n	0.95	9	0.5	9	1;0	n	0.97	16	0.5	16	1;0	n	1.00	5	0.0	5	0;0	n	1.00	14	0.0	14	0;0	n	1.00	2	0.0	2	0;0	n	0.62	12	7.5	12	9;6	y	1.00	17	0.0	17	0;0	n	1.00	12	0.0	12	0;0	n	1.00	19	0.0	19	0;0	n	1.00	11	0.0	11	0;0	n	1.00	13	0.0	13	0;0	n	ENSMUSG00000026571.13	Dcaf6	chr1	protein_coding	DDB1 and CUL4 associated factor 6
known_NIR_352	chr1	165195074;165198817	165198692;165216227	-	165195074	165216227	cassetteExon	ENSMUST00000195220.2	known	0.27	3.0	8	2;4	8	y	0.18	2.0	9	2;2	9	y	0.24	5.0	16	5;5	16	y	0.67	10.0	5	8;12	5	y	0.26	5.0	14	2;8	14	y	0.71	5.0	2	6;4	2	y	0.35	6.5	12	8;5	12	y	0.15	3.0	17	6;0	17	n	0.37	7.0	12	5;9	12	y	0.16	3.5	19	1;6	19	n	0.29	4.5	11	4;5	11	y	0.26	4.5	13	3;6	13	y	ENSMUSG00000026571.13	Dcaf6	chr1	protein_coding	DDB1 and CUL4 associated factor 6
known_NIR_353	chr1	165195074;165198817	165198692;165216227	-	165195074;165201804	165201631;165216227	MXE	ENSMUST00000194869.6	known	1.00	3.0	0.0	2;4	0;0	n	0.80	2.0	0.5	2;2	1;0	n	0.91	5.0	0.5	5;5	1;0	n	1.00	10.0	0.0	8;12	0;0	n	1.00	5.0	0.0	2;8	0;0	n	1.00	5.0	0.0	6;4	0;0	n	0.46	6.5	7.5	8;5	9;6	y	1.00	3.0	0.0	6;0	0;0	n	1.00	7.0	0.0	5;9	0;0	n	1.00	3.5	0.0	1;6	0;0	n	1.00	4.5	0.0	4;5	0;0	n	1.00	4.5	0.0	3;6	0;0	n	ENSMUSG00000026571.13	Dcaf6	chr1	protein_coding	DDB1 and CUL4 associated factor 6
known_NIR_354	chr1	165198817	165216227	-	165185115	165216227	A3SS	ENSMUST00000027856.13	known	0.14	4	25	4	25	y	0.05	2	35	2	35	y	0.16	5	27	5	27	y	0.27	12	32	12	32	y	0.15	8	44	8	44	y	0.13	4	26	4	26	y	0.09	5	53	5	53	y	0.00	0	25	0	25	n	0.24	9	28	9	28	y	0.10	6	55	6	55	y	0.15	5	29	5	29	y	0.12	6	44	6	44	y	ENSMUSG00000026571.13	Dcaf6	chr1	protein_coding	DDB1 and CUL4 associated factor 6
known_NIR_355	chr1	165201804	165216227	-	165185115	165216227	A3SS	ENSMUST00000027856.13	known	0.00	0	25	0	25	n	0.00	0	35	0	35	n	0.00	0	27	0	27	n	0.00	0	32	0	32	n	0.00	0	44	0	44	n	0.00	0	26	0	26	n	0.10	6	53	6	53	y	0.00	0	25	0	25	n	0.00	0	28	0	28	n	0.00	0	55	0	55	n	0.00	0	29	0	29	n	0.00	0	44	0	44	n	ENSMUSG00000026571.13	Dcaf6	chr1	protein_coding	DDB1 and CUL4 associated factor 6
known_NIR_356	chr1	165289080	165305760	+	165289080	165302523	A3SS&ES	ENSMUST00000027853.6	known	0.00	0	641	0	641	n	0.00	2	728	2	728	y	0.00	0	457	0	457	n	0.00	0	655	0	655	n	0.00	0	720	0	720	n	0.00	0	245	0	245	n	0.00	1	903	1	903	n	0.00	0	326	0	326	n	0.00	0	630	0	630	n	0.00	0	942	0	942	n	0.00	0	789	0	789	n	0.00	0	824	0	824	n	ENSMUSG00000026568.7	Mpc2	chr1	protein_coding	mitochondrial pyruvate carrier 2
known_NIR_357	chr1	16530643	16533259	-	16510682	16533259	A3SS	ENSMUST00000162751.8	known	0.33	2	4	2	4	n	0.38	3	5	3	5	n	0.18	2	9	2	9	y	0.12	1	7	1	7	n	0.12	1	7	1	7	n	0.00	0	4	0	4	n	0.33	4	8	4	8	y	0.40	2	3	2	3	n	0.14	1	6	1	6	n	0.38	3	5	3	5	n	0.33	2	4	2	4	n	0.45	5	6	5	6	y	ENSMUSG00000025920.20	Stau2	chr1	protein_coding	staufen double-stranded RNA binding protein 2
known_NIR_358	chr1	16533418	16579566	-	16533418;16556374	16556244;16579566	ES	ENSMUST00000162751.8	known	0.71	5	2.0	5	2;2	n	0.57	4	3.0	4	3;3	y	0.67	2	1.0	2	1;1	n	0.60	6	4.0	6	3;5	y	0.50	5	5.0	5	3;7	y	0.40	3	4.5	3	3;6	y	0.56	7	5.5	7	7;4	y	0.67	3	1.5	3	2;1	n	0.67	4	2.0	4	4;0	n	0.29	3	7.5	3	9;6	y	0.25	1	3.0	1	4;2	n	0.43	6	8.0	6	6;10	y	ENSMUSG00000025920.20	Stau2	chr1	protein_coding	staufen double-stranded RNA binding protein 2
known_NIR_359	chr1	165421246	165432179	-	165429424	165432179	3pMXE	ENSMUST00000194829.6	known	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.30	3	7	3	7	y	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.50	2	2	2	2	n	0.27	3	8	3	8	y	0.50	2	2	2	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	1.00	2	0	2	0	n	ENSMUSG00000026566.16	Mpzl1	chr1	protein_coding	myelin protein zero-like 1
known_NIR_360	chr1	165421246;165429424	165429319;165432179	-	165421246	165432179	cassetteExon	ENSMUST00000068705.13	known	1.00	1.5	0	1;2	0	n	1.00	1.5	0	2;1	0	n	0.70	7.0	3	7;7	3	y	1.00	1.0	0	0;2	0	n	1.00	6.0	0	6;6	0	n	0.73	5.5	2	9;2	2	y	0.75	9.0	3	10;8	3	y	0.69	4.5	2	7;2	2	y	1.00	0.5	0	0;1	0	n	1.00	1.0	0	0;2	0	n	1.00	3.5	0	4;3	0	n	0.43	1.5	2	3;0	2	n	ENSMUSG00000026566.16	Mpzl1	chr1	protein_coding	myelin protein zero-like 1
known_NIR_361	chr1	165487013;165491224	165491135;165492518	-	165487013	165492518	cassetteExon	ENSMUST00000097474.9	known	1.00	2.5	0	2;3	0	n	0.78	3.5	1	0;7	1	n	0.67	4.0	2	4;4	2	y	0.50	1.0	1	1;1	1	n	0.64	3.5	2	2;5	2	n	0.67	2.0	1	2;2	1	n	0.89	16.0	2	15;17	2	y	1.00	1.5	0	1;2	0	n	1.00	4.5	0	2;7	0	n	1.00	2.0	0	0;4	0	n	1.00	1.0	0	0;2	0	n	0.71	2.5	1	3;2	1	n	ENSMUSG00000040723.15	Rcsd1	chr1	protein_coding	RCSD domain containing 1
known_NIR_362	chr1	165591707;165592323	165592170;165597382	+	165591707	165597382	cassetteExon	ENSMUST00000111432.10	known	0.01	5.0	794	5;5	794	y	0.00	1.5	742	0;3	742	n	0.00	0.5	538	1;0	538	n	0.00	4.0	939	3;5	939	y	0.00	3.5	1147	7;0	1147	n	0.00	1.0	402	2;0	402	n	0.00	3.5	1203	1;6	1203	n	0.01	2.5	430	3;2	430	y	0.00	4.0	850	3;5	850	y	0.01	7.5	1387	8;7	1387	y	0.00	4.0	1066	5;3	1066	y	0.00	2.5	1179	1;4	1179	n	ENSMUSG00000040713.13	Creg1	chr1	protein_coding	cellular repressor of E1A-stimulated genes 1
known_NIR_363	chr1	165597089	165597382	+	165591707	165597382	A5SS	ENSMUST00000111432.10	known	0.00	0	794	0	794	n	0.00	0	742	0	742	n	0.00	2	538	2	538	y	0.00	1	939	1	939	n	0.00	0	1147	0	1147	n	0.00	0	402	0	402	n	0.00	2	1203	2	1203	y	0.00	0	430	0	430	n	0.00	0	850	0	850	n	0.00	1	1387	1	1387	n	0.00	3	1066	3	1066	y	0.00	1	1179	1	1179	n	ENSMUSG00000040713.13	Creg1	chr1	protein_coding	cellular repressor of E1A-stimulated genes 1
known_NIR_364	chr1	166098187	166122160	+	166098187;166119041	166118985;166122160	ES	ENSMUST00000111416.7	known	0.55	8	6.5	8	6;7	y	0.35	8	15.0	8	18;12	y	0.56	18	14.0	18	11;17	y	0.50	20	20.0	20	20;20	y	0.52	24	22.0	24	25;19	y	0.64	14	8.0	14	11;5	y	0.51	17	16.5	17	16;17	y	0.52	25	23.5	25	23;24	y	0.49	11	11.5	11	9;14	y	0.32	12	25.5	12	27;24	y	0.61	11	7.0	11	7;7	y	0.42	10	14.0	10	12;16	y	ENSMUSG00000040612.14	Ildr2	chr1	protein_coding	immunoglobulin-like domain containing receptor 2
known_NIR_365	chr1	166098187;166122306	166122160;166131071	+	166098187	166131071	cassetteExon	ENSMUST00000192732.6	known	0.50	4.0	4	8;0	4	n	0.36	4.0	7	8;0	7	n	0.70	9.5	4	18;1	4	n	0.77	10.0	3	20;0	3	n	0.57	12.0	9	24;0	9	n	0.54	7.0	6	14;0	6	n	0.70	9.5	4	17;2	4	y	0.63	13.5	8	25;2	8	y	0.73	5.5	2	11;0	2	n	0.42	6.5	9	12;1	9	n	0.58	5.5	4	11;0	4	n	0.50	5.0	5	10;0	5	n	ENSMUSG00000040612.14	Ildr2	chr1	protein_coding	immunoglobulin-like domain containing receptor 2
known_NIR_366	chr1	166122306	166131071	+	166122306;166123497	166123321;166131071	ES	ENSMUST00000111416.7	known	0.00	0	18.0	0	16;20	n	0.00	0	12.0	0	11;13	n	0.04	1	23.0	1	26;20	n	0.00	0	29.5	0	22;37	n	0.00	0	46.0	0	41;51	n	0.00	0	25.0	0	22;28	n	0.05	2	34.5	2	32;37	y	0.04	2	42.5	2	40;45	y	0.00	0	17.5	0	12;23	n	0.02	1	42.5	1	38;47	n	0.00	0	9.5	0	9;10	n	0.00	0	27.5	0	25;30	n	ENSMUSG00000040612.14	Ildr2	chr1	protein_coding	immunoglobulin-like domain containing receptor 2
known_NIR_367	chr1	166123497	166131071	+	166098187	166131071	A5SS	ENSMUST00000192732.6	known	0.83	20	4	20	4	y	0.65	13	7	13	7	y	0.83	20	4	20	4	y	0.93	37	3	37	3	y	0.85	51	9	51	9	y	0.82	28	6	28	6	y	0.90	37	4	37	4	y	0.85	45	8	45	8	y	0.92	23	2	23	2	y	0.84	47	9	47	9	y	0.71	10	4	10	4	y	0.86	30	5	30	5	y	ENSMUSG00000040612.14	Ildr2	chr1	protein_coding	immunoglobulin-like domain containing receptor 2
known_NIR_368	chr1	166135502	166136416	+	166135502	166138329	A3SS	ENSMUST00000195557.6	known	1.00	18	0	18	0	n	0.92	23	2	23	2	y	1.00	32	0	32	0	n	1.00	35	0	35	0	n	1.00	60	0	60	0	n	1.00	22	0	22	0	n	1.00	38	0	38	0	n	1.00	36	0	36	0	n	1.00	30	0	30	0	n	1.00	44	0	44	0	n	1.00	15	0	15	0	n	1.00	24	0	24	0	n	ENSMUSG00000040612.14	Ildr2	chr1	protein_coding	immunoglobulin-like domain containing receptor 2
known_NIR_369	chr1	166135502	166138329	+	166135502;166137112	166136416;166138329	ES	ENSMUST00000111416.7	known	0.00	0	26.0	0	18;34	n	0.07	2	25.0	2	23;27	y	0.00	0	33.5	0	32;35	n	0.00	0	37.0	0	35;39	n	0.00	0	60.5	0	60;61	n	0.00	0	26.0	0	22;30	n	0.00	0	44.0	0	38;50	n	0.00	0	42.5	0	36;49	n	0.00	0	34.5	0	30;39	n	0.00	0	54.5	0	44;65	n	0.00	0	19.5	0	15;24	n	0.00	0	37.0	0	24;50	n	ENSMUSG00000040612.14	Ildr2	chr1	protein_coding	immunoglobulin-like domain containing receptor 2
known_NIR_370	chr1	166137112	166138329	+	166135502	166138329	A5SS	ENSMUST00000195557.6	known	1.00	34	0	34	0	n	0.93	27	2	27	2	y	1.00	35	0	35	0	n	1.00	39	0	39	0	n	1.00	61	0	61	0	n	1.00	30	0	30	0	n	1.00	50	0	50	0	n	1.00	49	0	49	0	n	1.00	39	0	39	0	n	1.00	65	0	65	0	n	1.00	24	0	24	0	n	1.00	50	0	50	0	n	ENSMUSG00000040612.14	Ildr2	chr1	protein_coding	immunoglobulin-like domain containing receptor 2
known_NIR_371	chr1	16655655	16668175	-	16655576	16668175	A3SS	ENSMUST00000182554.9	known	0.88	37	5	37	5	y	0.88	51	7	51	7	y	0.96	65	3	65	3	y	0.91	41	4	41	4	y	0.95	60	3	60	3	y	0.85	33	6	33	6	y	0.86	62	10	62	10	y	0.92	47	4	47	4	y	1.00	52	0	52	0	n	0.93	57	4	57	4	y	0.90	44	5	44	5	y	0.95	69	4	69	4	y	ENSMUSG00000025939.20	Ube2w	chr1	protein_coding	ubiquitin-conjugating enzyme E2W (putative)
known_NIR_372	chr1	167136343	167136875	+	167136502	167136875	A5SS	ENSMUST00000195015.6	known	0.00	0	281	0	281	n	0.00	0	311	0	311	n	0.00	0	280	0	280	n	0.00	0	364	0	364	n	0.00	0	481	0	481	n	0.00	0	226	0	226	n	0.00	2	421	2	421	y	0.00	0	226	0	226	n	0.00	0	261	0	261	n	0.00	0	421	0	421	n	0.00	0	336	0	336	n	0.01	2	365	2	365	y	ENSMUSG00000052428.11	Tmco1	chr1	protein_coding	transmembrane and coiled-coil domains 1
known_NIR_373	chr1	167143858	167153501	+	167143858	167146831	A3SS&ES	ENSMUST00000195015.6	known	0.00	0	324	0	324	n	0.00	0	308	0	308	n	0.00	0	349	0	349	n	0.00	0	377	0	377	n	0.00	0	506	0	506	n	0.00	0	218	0	218	n	0.01	4	488	4	488	y	0.00	0	273	0	273	n	0.01	4	345	4	345	y	0.00	0	521	0	521	n	0.00	0	354	0	354	n	0.01	4	443	4	443	y	ENSMUSG00000052428.11	Tmco1	chr1	protein_coding	transmembrane and coiled-coil domains 1
known_NIR_374	chr1	16716053	16718179	-	16717277	16718179	3pMXE	ENSMUST00000188987.7	known	0.98	223	5	223	5	y	0.99	208	3	208	3	y	0.96	303	13	303	13	y	0.99	217	3	217	3	y	1.00	314	1	314	1	n	0.98	165	3	165	3	y	0.98	294	7	294	7	y	0.99	154	2	154	2	y	1.00	253	1	253	1	n	0.99	264	4	264	4	y	0.98	222	4	222	4	y	0.99	278	2	278	2	y	ENSMUSG00000079658.10	Eloc	chr1	protein_coding	elongin C
known_NIR_375	chr1	16716053;16717277	16717212;16718179	-	16716053	16718179	cassetteExon	ENSMUST00000188641.7	known	0.02	4.5	223	4;5	223	y	0.02	4.0	208	5;3	208	y	0.03	10.0	303	7;13	303	y	0.01	3.0	217	3;3	217	y	0.01	3.5	314	6;1	314	n	0.01	2.0	165	1;3	165	n	0.02	5.5	294	4;7	294	y	0.01	1.0	154	0;2	154	n	0.00	1.0	253	1;1	253	n	0.01	4.0	264	4;4	264	y	0.01	3.0	222	2;4	222	y	0.01	2.0	278	2;2	278	y	ENSMUSG00000079658.10	Eloc	chr1	protein_coding	elongin C
known_NIR_376	chr1	16718231	16726520	-	16718231	16727136	A5SS	ENSMUST00000186948.7	known	0.14	1	6	1	6	n	0.23	3	10	3	10	y	0.30	6	14	6	14	y	0.30	3	7	3	7	y	0.19	4	17	4	17	y	0.27	3	8	3	8	y	0.33	7	14	7	14	y	0.15	2	11	2	11	y	0.35	6	11	6	11	y	0.21	5	19	5	19	y	0.30	3	7	3	7	y	0.27	7	19	7	19	y	ENSMUSG00000079658.10	Eloc	chr1	protein_coding	elongin C
known_NIR_377	chr1	16718231	16726520	-	16718231	16727216	A5SS	ENSMUST00000115352.10	known	0.04	1	25	1	25	n	0.10	3	26	3	26	y	0.12	6	42	6	42	y	0.12	3	21	3	21	y	0.11	4	33	4	33	y	0.14	3	18	3	18	y	0.25	7	21	7	21	y	0.13	2	13	2	13	y	0.26	6	17	6	17	y	0.22	5	18	5	18	y	0.17	3	15	3	15	y	0.22	7	25	7	25	y	ENSMUSG00000079658.10	Eloc	chr1	protein_coding	elongin C
known_NIR_378	chr1	16718231	16727046	-	16718231	16726520	5pMXE	ENSMUST00000186701.2	known	0.99	91	1	91	1	n	0.96	80	3	80	3	y	0.94	100	6	100	6	y	0.97	97	3	97	3	y	0.97	131	4	131	4	y	0.95	60	3	60	3	y	0.94	111	7	111	7	y	0.96	51	2	51	2	y	0.94	100	6	100	6	y	0.96	114	5	114	5	y	0.97	83	3	83	3	y	0.94	110	7	110	7	y	ENSMUSG00000079658.10	Eloc	chr1	protein_coding	elongin C
known_NIR_379	chr1	16718231	16727136	-	16718231	16727046	5pMXE	ENSMUST00000188641.7	known	0.06	6	91	6	91	y	0.11	10	80	10	80	y	0.12	14	100	14	100	y	0.07	7	97	7	97	y	0.11	17	131	17	131	y	0.12	8	60	8	60	y	0.11	14	111	14	111	y	0.18	11	51	11	51	y	0.10	11	100	11	100	y	0.14	19	114	19	114	y	0.08	7	83	7	83	y	0.15	19	110	19	110	y	ENSMUSG00000079658.10	Eloc	chr1	protein_coding	elongin C
known_NIR_380	chr1	16718231	16727136	-	16718231	16727216	A5SS	ENSMUST00000115352.10	known	0.19	6	25	6	25	y	0.28	10	26	10	26	y	0.25	14	42	14	42	y	0.25	7	21	7	21	y	0.34	17	33	17	33	y	0.31	8	18	8	18	y	0.40	14	21	14	21	y	0.46	11	13	11	13	y	0.39	11	17	11	17	y	0.51	19	18	19	18	y	0.32	7	15	7	15	y	0.43	19	25	19	25	y	ENSMUSG00000079658.10	Eloc	chr1	protein_coding	elongin C
known_NIR_381	chr1	16718231	16727216	-	16718231	16727046	5pMXE	ENSMUST00000188641.7	known	0.22	25	91	25	91	y	0.25	26	80	26	80	y	0.30	42	100	42	100	y	0.18	21	97	21	97	y	0.20	33	131	33	131	y	0.23	18	60	18	60	y	0.16	21	111	21	111	y	0.20	13	51	13	51	y	0.15	17	100	17	100	y	0.14	18	114	18	114	y	0.15	15	83	15	83	y	0.19	25	110	25	110	y	ENSMUSG00000079658.10	Eloc	chr1	protein_coding	elongin C
known_NIR_382	chr1	16718231;16726683	16726520;16727046	-	16718231	16727046	cassetteExon	ENSMUST00000188641.7	known	0.01	1.0	91	1;1	91	n	0.03	2.5	80	3;2	80	y	0.03	3.0	100	6;0	100	n	0.02	1.5	97	3;0	97	n	0.02	2.0	131	4;0	131	n	0.02	1.5	60	3;0	60	n	0.03	4.0	111	7;1	111	n	0.02	1.0	51	2;0	51	n	0.03	3.0	100	6;0	100	n	0.03	3.0	114	5;1	114	n	0.03	2.5	83	3;2	83	y	0.03	3.5	110	7;0	110	n	ENSMUSG00000079658.10	Eloc	chr1	protein_coding	elongin C
known_NIR_383	chr1	16735729	16735932	+	16735729	16737889	A3SS	ENSMUST00000177501.2	known	0.25	2	6	2	6	n	0.33	1	2	1	2	n	0.09	1	10	1	10	n	0.00	0	7	0	7	n	0.21	3	11	3	11	y	0.57	4	3	4	3	n	0.20	2	8	2	8	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.33	5	10	5	10	y	0.00	0	6	0	6	n	0.00	0	7	0	7	n	ENSMUSG00000025940.7	Tmem70	chr1	protein_coding	transmembrane protein 70
known_NIR_384	chr1	16735729	16735932	+	16735729	16737892	A3SS	ENSMUST00000065373.6	known	0.02	2	82	2	82	y	0.01	1	88	1	88	n	0.01	1	82	1	82	n	0.00	0	116	0	116	n	0.02	3	123	3	123	y	0.06	4	61	4	61	y	0.02	2	115	2	115	y	0.00	0	49	0	49	n	0.00	0	78	0	78	n	0.03	5	139	5	139	y	0.00	0	76	0	76	n	0.00	0	120	0	120	n	ENSMUSG00000025940.7	Tmem70	chr1	protein_coding	transmembrane protein 70
known_NIR_385	chr1	16735729	16737892	+	16735596	16737892	A5SS	ENSMUST00000177532.2	known	1.00	82	0	82	0	n	0.98	88	2	88	2	y	1.00	82	0	82	0	n	1.00	116	0	116	0	n	1.00	123	0	123	0	n	1.00	61	0	61	0	n	1.00	115	0	115	0	n	0.96	49	2	49	2	y	1.00	78	0	78	0	n	1.00	139	0	139	0	n	0.96	76	3	76	3	y	1.00	120	0	120	0	n	ENSMUSG00000025940.7	Tmem70	chr1	protein_coding	transmembrane protein 70
known_NIR_386	chr1	16735729	16737892	+	16735729	16737889	A3SS	ENSMUST00000177501.2	known	0.93	82	6	82	6	y	0.98	88	2	88	2	y	0.89	82	10	82	10	y	0.94	116	7	116	7	y	0.92	123	11	123	11	y	0.95	61	3	61	3	y	0.93	115	8	115	8	y	0.92	49	4	49	4	y	0.93	78	6	78	6	y	0.93	139	10	139	10	y	0.93	76	6	76	6	y	0.94	120	7	120	7	y	ENSMUSG00000025940.7	Tmem70	chr1	protein_coding	transmembrane protein 70
known_NIR_387	chr1	16761997	16771073	+	16761997	16771019	A3SS	ENSMUST00000026881.11	known	0.00	0	34	0	34	n	0.09	2	21	2	21	y	0.00	0	21	0	21	n	0.00	0	17	0	17	n	0.00	0	21	0	21	n	0.00	0	11	0	11	n	0.00	0	22	0	22	n	0.00	0	15	0	15	n	0.00	0	16	0	16	n	0.00	0	29	0	29	n	0.00	0	16	0	16	n	0.00	0	19	0	19	n	ENSMUSG00000025779.11	Ly96	chr1	protein_coding	lymphocyte antigen 96
known_NIR_388	chr1	167986393	168011099	-	167949049	168011099	A3SS	ENSMUST00000188912.7	known	1.00	7	0	7	0	n	0.94	15	1	15	1	n	1.00	16	0	16	0	n	1.00	12	0	12	0	n	0.86	24	4	24	4	y	1.00	12	0	12	0	n	1.00	17	0	17	0	n	1.00	12	0	12	0	n	1.00	12	0	12	0	n	0.89	16	2	16	2	y	1.00	9	0	9	0	n	0.85	17	3	17	3	y	ENSMUSG00000052534.16	Pbx1	chr1	protein_coding	pre B cell leukemia homeobox 1
known_NIR_389	chr1	168011188;168012637	168012525;168018847	-	168011188	168018847	cassetteExon	ENSMUST00000188912.7	known	0.10	2.0	19	4;0	19	n	0.29	2.0	5	1;3	5	n	0.03	0.5	14	0;1	14	n	0.04	0.5	13	0;1	13	n	0.03	0.5	15	0;1	15	n	0.26	2.5	7	5;0	7	n	0.33	6.5	13	9;4	13	y	0.02	0.5	22	1;0	22	n	0.05	0.5	9	0;1	9	n	0.24	3.5	11	3;4	11	y	0.24	2.5	8	4;1	8	n	0.18	3.5	16	2;5	16	y	ENSMUSG00000052534.16	Pbx1	chr1	protein_coding	pre B cell leukemia homeobox 1
known_NIR_390	chr1	169783602	169787256	-	169783602;169787048	169786992;169787256	ES	ENSMUST00000027989.13	known	0.02	1	44.5	1	45;44	n	0.00	0	27.0	0	24;30	n	0.06	10	145.5	10	129;162	y	0.05	4	81.5	4	73;90	y	0.05	7	146.5	7	144;149	y	0.04	5	107.5	5	108;107	y	0.05	6	103.5	6	99;108	y	0.05	4	74.0	4	75;73	y	0.00	0	56.0	0	54;58	n	0.03	2	77.5	2	74;81	y	0.04	2	54.0	2	57;51	y	0.04	3	69.5	3	57;82	y	ENSMUSG00000026675.13	Hsd17b7	chr1	protein_coding	hydroxysteroid (17-beta) dehydrogenase 7
known_NIR_391	chr1	169783602	169787256	-	169787048	169787256	3pMXE	ENSMUST00000123230.2	known	0.02	1	44	1	44	n	0.00	0	30	0	30	n	0.06	10	162	10	162	y	0.04	4	90	4	90	y	0.04	7	149	7	149	y	0.04	5	107	5	107	y	0.05	6	108	6	108	y	0.05	4	73	4	73	y	0.00	0	58	0	58	n	0.02	2	81	2	81	y	0.04	2	51	2	51	y	0.04	3	82	3	82	y	ENSMUSG00000026675.13	Hsd17b7	chr1	protein_coding	hydroxysteroid (17-beta) dehydrogenase 7
known_NIR_392	chr1	169971032;169975612	169975565;169976840	-	169971032	169976840	cassetteExon	ENSMUST00000111350.10	known	0.55	61.5	50	107;16	50	y	0.54	53.0	46	81;25	46	y	0.42	49.5	69	84;15	69	y	0.48	46.0	49	77;15	49	y	0.64	81.5	46	120;43	46	y	0.51	37.0	36	60;14	36	y	0.55	65.5	54	115;16	54	y	0.49	37.0	38	61;13	38	y	0.50	28.0	28	48;8	28	y	0.50	54.0	55	94;14	55	y	0.45	48.5	60	84;13	60	y	0.56	58.0	45	89;27	45	y	ENSMUSG00000026670.16	Uap1	chr1	protein_coding	UDP-N-acetylglucosamine pyrophosphorylase 1
known_NIR_393	chr1	169971032;169975615	169975565;169976840	-	169971032	169976840	cassetteExon	ENSMUST00000111350.10	known	0.65	91.0	50	107;75	50	y	0.59	65.0	46	81;49	46	y	0.53	78.0	69	84;72	69	y	0.58	67.5	49	77;58	49	y	0.69	103.0	46	120;86	46	y	0.58	50.0	36	60;40	36	y	0.64	97.5	54	115;80	54	y	0.59	55.0	38	61;49	38	y	0.62	45.5	28	48;43	28	y	0.60	81.5	55	94;69	55	y	0.55	74.0	60	84;64	60	y	0.61	70.5	45	89;52	45	y	ENSMUSG00000026670.16	Uap1	chr1	protein_coding	UDP-N-acetylglucosamine pyrophosphorylase 1
known_NIR_394	chr1	169975612	169976840	-	169975615	169976840	A3SS	ENSMUST00000111351.10	known	0.18	16	75	16	75	y	0.34	25	49	25	49	y	0.17	15	72	15	72	y	0.21	15	58	15	58	y	0.33	43	86	43	86	y	0.26	14	40	14	40	y	0.17	16	80	16	80	y	0.21	13	49	13	49	y	0.16	8	43	8	43	y	0.17	14	69	14	69	y	0.17	13	64	13	64	y	0.34	27	52	27	52	y	ENSMUSG00000026670.16	Uap1	chr1	protein_coding	UDP-N-acetylglucosamine pyrophosphorylase 1
known_NIR_395	chr1	170027582	170034683	-	170027582;170032772	170032684;170034683	ES	ENSMUST00000150821.8	known	0.00	0	25.0	0	31;19	n	0.00	0	15.5	0	17;14	n	0.03	1	38.0	1	40;36	n	0.02	1	41.0	1	42;40	n	0.02	1	53.5	1	56;51	n	0.00	0	28.0	0	31;25	n	0.00	0	39.0	0	41;37	n	0.03	1	30.0	1	33;27	n	0.05	1	20.0	1	19;21	n	0.09	4	38.5	4	45;32	y	0.06	1	16.5	1	21;12	n	0.09	4	42.0	4	45;39	y	ENSMUSG00000026667.15	Uhmk1	chr1	protein_coding	U2AF homology motif (UHM) kinase 1
known_NIR_396	chr1	170148156	170151480	-	170148156	170155087	A5SS	ENSMUST00000161221.8	known	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	36	0	36	n	0.00	0	20	0	20	n	0.15	2	11	2	11	y	0.00	0	10	0	10	n	0.00	0	24	0	24	n	0.00	0	24	0	24	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	ENSMUSG00000038473.15	Nos1ap	chr1	protein_coding	nitric oxide synthase 1 (neuronal) adaptor protein
known_NIR_397	chr1	170202890	170218300	-	170202875	170218300	A3SS	ENSMUST00000160456.8	known	0.00	0	5	0	5	n	0.38	3	5	3	5	n	0.40	19	29	19	29	y	0.18	3	14	3	14	y	0.30	9	21	9	21	y	0.16	5	27	5	27	y	0.46	6	7	6	7	y	0.50	7	7	7	7	y	0.13	2	13	2	13	y	0.41	7	10	7	10	y	0.33	2	4	2	4	n	0.37	7	12	7	12	y	ENSMUSG00000038473.15	Nos1ap	chr1	protein_coding	nitric oxide synthase 1 (neuronal) adaptor protein
known_NIR_398	chr1	170342255	170384273	-	170342255	170416829	A5SS	ENSMUST00000160456.8	known	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	42	0	42	n	0.00	0	24	0	24	n	0.08	2	22	2	22	y	0.00	0	21	0	21	n	0.10	1	9	1	9	n	0.00	0	22	0	22	n	0.00	0	8	0	8	n	0.00	0	19	0	19	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	ENSMUSG00000038473.15	Nos1ap	chr1	protein_coding	nitric oxide synthase 1 (neuronal) adaptor protein
known_NIR_399	chr1	170702139	170707699	-	170702139;170707415	170707229;170707699	ES	ENSMUST00000170420.8	known	0.00	0	84.5	0	94;75	n	0.00	0	76.5	0	78;75	n	0.00	0	72.0	0	75;69	n	0.00	0	66.5	0	65;68	n	0.00	0	110.0	0	115;105	n	0.00	0	44.0	0	58;30	n	0.00	0	113.5	0	136;91	n	0.00	0	55.0	0	62;48	n	0.01	1	66.0	1	71;61	n	0.02	2	93.0	2	115;71	y	0.00	0	68.0	0	75;61	n	0.00	0	82.0	0	86;78	n	ENSMUSG00000026659.14	Dusp12	chr1	protein_coding	dual specificity phosphatase 12
known_NIR_400	chr1	170707795	170708484	-	170708260	170708484	3pMXE	ENSMUST00000172042.2	known	0.13	8	54	8	54	y	0.06	4	61	4	61	y	0.05	3	60	3	60	y	0.07	5	69	5	69	y	0.14	12	74	12	74	y	0.14	2	12	2	12	y	0.06	6	93	6	93	y	0.12	8	57	8	57	y	0.07	3	38	3	38	y	0.14	10	61	10	61	y	0.17	8	38	8	38	y	0.12	8	58	8	58	y	ENSMUSG00000026659.14	Dusp12	chr1	protein_coding	dual specificity phosphatase 12
known_NIR_401	chr1	170707795;170708260	170708142;170708484	-	170707795	170708484	cassetteExon	ENSMUST00000170420.8	known	0.86	51.0	8	48;54	8	y	0.94	59.0	4	57;61	4	y	0.94	51.5	3	43;60	3	y	0.92	60.5	5	52;69	5	y	0.86	75.5	12	77;74	12	y	0.88	15.0	2	18;12	2	y	0.92	73.5	6	54;93	6	y	0.85	45.0	8	33;57	8	y	0.93	37.5	3	37;38	3	y	0.85	55.5	10	50;61	10	y	0.82	35.5	8	33;38	8	y	0.88	57.5	8	57;58	8	y	ENSMUSG00000026659.14	Dusp12	chr1	protein_coding	dual specificity phosphatase 12
known_NIR_402	chr1	170708597	170712477	-	170708597	170712636	A5SS	ENSMUST00000171447.8	known	0.04	1	26	1	26	n	0.00	0	28	0	28	n	0.00	0	28	0	28	n	0.12	4	29	4	29	y	0.13	6	40	6	40	y	0.00	0	17	0	17	n	0.00	0	34	0	34	n	0.00	0	29	0	29	n	0.04	1	27	1	27	n	0.07	2	28	2	28	y	0.21	6	22	6	22	y	0.08	3	34	3	34	y	ENSMUSG00000026659.14	Dusp12	chr1	protein_coding	dual specificity phosphatase 12
known_NIR_403	chr1	170708597	170712636	-	170708610	170712636	A3SS	ENSMUST00000170420.8	known	0.63	26	15	26	15	y	0.70	28	12	28	12	y	0.78	28	8	28	8	y	0.67	29	14	29	14	y	0.63	40	23	40	23	y	0.61	17	11	17	11	y	0.65	34	18	34	18	y	0.64	29	16	29	16	y	0.64	27	15	27	15	y	0.70	28	12	28	12	y	0.65	22	12	22	12	y	0.52	34	32	34	32	y	ENSMUSG00000026659.14	Dusp12	chr1	protein_coding	dual specificity phosphatase 12
known_NIR_404	chr1	170788802	170793271	-	170788802;170791034	170790894;170793271	ES	ENSMUST00000027966.14	known	0.98	57	1.0	57	0;2	n	1.00	64	0.0	64	0;0	n	0.99	87	0.5	87	1;0	n	0.99	55	0.5	55	1;0	n	0.98	115	2.5	115	0;5	n	1.00	39	0.0	39	0;0	n	0.98	65	1.5	65	1;2	n	1.00	36	0.0	36	0;0	n	0.93	43	3.0	43	3;3	y	0.99	79	1.0	79	0;2	n	0.99	46	0.5	46	0;1	n	0.95	62	3.5	62	3;4	y	ENSMUSG00000026656.16	Fcgr2b	chr1	protein_coding	Fc receptor, IgG, low affinity IIb
known_NIR_405	chr1	170885514	170886155	-	170885517	170886155	A3SS	ENSMUST00000164044.8	known	0.09	3	31	3	31	y	0.04	1	27	1	27	n	0.03	1	31	1	31	n	0.31	4	9	4	9	y	0.14	5	31	5	31	y	0.06	1	16	1	16	n	0.15	4	23	4	23	y	0.11	2	17	2	17	y	0.24	4	13	4	13	y	0.39	7	11	7	11	y	0.38	3	5	3	5	n	0.11	1	8	1	8	n	ENSMUSG00000059498.14	Fcgr3	chr1	protein_coding	Fc receptor, IgG, low affinity III
known_NIR_406	chr1	170941665;170950762	170950615;170952603	+	170941665	170952603	cassetteExon	ENSMUST00000129651.8	known	0.60	3.0	2	4;2	2	n	1.00	1.5	0	0;3	0	n	1.00	2.0	0	0;4	0	n	0.50	4.0	4	5;3	4	y	1.00	3.5	0	3;4	0	n	0.80	4.0	1	0;8	1	n	0.60	4.5	3	3;6	3	y	0.75	3.0	1	4;2	1	n	0.83	5.0	1	0;10	1	n	0.27	1.5	4	0;3	4	n	0.33	2.0	4	1;3	4	n	0.17	1.0	5	1;1	5	n	ENSMUSG00000026649.15	Cfap126	chr1	protein_coding	cilia and flagella associated protein 126
known_NIR_407	chr1	170966324	170973325	-	170966324;170971228	170971127;170973325	ES	ENSMUST00000111336.10	known	0.00	2	667.5	2	594;741	y	0.00	1	542.0	1	510;574	n	0.00	3	638.5	3	579;698	y	0.00	0	656.0	0	585;727	n	0.00	3	884.5	3	845;924	y	0.00	1	416.0	1	398;434	n	0.00	1	889.0	1	808;970	n	0.00	2	439.5	2	400;479	y	0.00	0	580.5	0	541;620	n	0.00	3	893.5	3	823;964	y	0.00	0	746.0	0	681;811	n	0.00	2	835.0	2	834;836	y	ENSMUSG00000058076.13	Sdhc	chr1	protein_coding	succinate dehydrogenase complex, subunit C, integral membrane protein
known_NIR_408	chr1	170973381	170978049	-	170973381	170978128	A5SS	ENSMUST00000111336.10	known	0.02	9	436	9	436	y	0.03	12	340	12	340	y	0.01	4	400	4	400	y	0.03	12	443	12	443	y	0.03	14	532	14	532	y	0.01	3	265	3	265	y	0.02	13	541	13	541	y	0.02	5	250	5	250	y	0.03	10	368	10	368	y	0.02	10	578	10	578	y	0.03	13	457	13	457	y	0.01	5	504	5	504	y	ENSMUSG00000058076.13	Sdhc	chr1	protein_coding	succinate dehydrogenase complex, subunit C, integral membrane protein
known_NIR_409	chr1	171041742;171042054	171041912;171043948	+	171041742	171043948	cassetteExon	ENSMUST00000155126.8	known	0.98	236.5	5	368;105	5	y	0.98	195.5	4	307;84	4	y	0.95	69.5	4	126;13	4	y	0.96	231.5	10	374;89	10	y	0.96	439.0	20	724;154	20	y	0.92	79.5	7	134;25	7	y	0.97	365.5	11	578;153	11	y	0.98	188.0	3	314;62	3	y	0.96	223.0	10	360;86	10	y	0.97	446.0	13	727;165	13	y	0.99	333.0	3	526;140	3	y	0.96	163.0	7	274;52	7	y	ENSMUSG00000005677.15	Nr1i3	chr1	protein_coding	nuclear receptor subfamily 1, group I, member 3
known_NIR_410	chr1	171042054	171043948	+	171042054;171042643	171042513;171043948	ES	ENSMUST00000005820.11	known	0.24	105	330.5	105	363;298	y	0.24	84	266.0	84	278;254	y	0.11	13	103.0	13	100;106	y	0.20	89	351.0	89	349;353	y	0.19	154	654.0	154	654;654	y	0.15	25	136.5	25	136;137	y	0.22	153	556.5	153	548;565	y	0.19	62	271.0	62	276;266	y	0.21	86	326.0	86	336;316	y	0.21	165	622.0	165	619;625	y	0.22	140	490.5	140	511;470	y	0.16	52	265.5	52	249;282	y	ENSMUSG00000005677.15	Nr1i3	chr1	protein_coding	nuclear receptor subfamily 1, group I, member 3
known_NIR_411	chr1	171042643	171043948	+	171041742	171043948	A5SS	ENSMUST00000155126.8	known	0.98	298	5	298	5	y	0.98	254	4	254	4	y	0.96	106	4	106	4	y	0.97	353	10	353	10	y	0.97	654	20	654	20	y	0.95	137	7	137	7	y	0.98	565	11	565	11	y	0.99	266	3	266	3	y	0.97	316	10	316	10	y	0.98	625	13	625	13	y	0.99	470	3	470	3	y	0.98	282	7	282	7	y	ENSMUSG00000005677.15	Nr1i3	chr1	protein_coding	nuclear receptor subfamily 1, group I, member 3
known_NIR_412	chr1	171044790	171044886	+	171044790	171044883	A3SS	ENSMUST00000005820.11	known	0.13	38	259	38	259	y	0.13	30	202	30	202	y	0.17	13	65	13	65	y	0.15	35	195	35	195	y	0.12	57	402	57	402	y	0.16	13	67	13	67	y	0.15	72	402	72	402	y	0.16	37	189	37	189	y	0.17	40	201	40	201	y	0.15	67	390	67	390	y	0.16	52	283	52	283	y	0.12	26	196	26	196	y	ENSMUSG00000005677.15	Nr1i3	chr1	protein_coding	nuclear receptor subfamily 1, group I, member 3
known_NIR_413	chr1	171044999	171046158	+	171044999;171045300	171045195;171046158	ES	ENSMUST00000005820.11	known	0.20	64	254.5	64	288;221	y	0.20	61	238.0	61	230;246	y	0.20	23	90.0	23	90;90	y	0.21	59	223.0	59	244;202	y	0.19	107	461.5	107	491;432	y	0.17	18	86.5	18	93;80	y	0.19	123	534.5	123	560;509	y	0.12	29	208.5	29	220;197	y	0.18	52	245.0	52	246;244	y	0.19	108	461.0	108	482;440	y	0.20	103	409.0	103	405;413	y	0.12	31	231.0	31	257;205	y	ENSMUSG00000005677.15	Nr1i3	chr1	protein_coding	nuclear receptor subfamily 1, group I, member 3
known_NIR_414	chr1	171044999	171046158	+	171045300	171046158	A5SS	ENSMUST00000133075.8	known	0.22	64	221	64	221	y	0.20	61	246	61	246	y	0.20	23	90	23	90	y	0.23	59	202	59	202	y	0.20	107	432	107	432	y	0.18	18	80	18	80	y	0.19	123	509	123	509	y	0.13	29	197	29	197	y	0.18	52	244	52	244	y	0.20	108	440	108	440	y	0.20	103	413	103	413	y	0.13	31	205	31	205	y	ENSMUSG00000005677.15	Nr1i3	chr1	protein_coding	nuclear receptor subfamily 1, group I, member 3
known_NIR_415	chr1	171049622	171049944	-	171049722	171049944	A3SS	ENSMUST00000005817.9	known	0.00	0	19	0	19	n	0.10	2	18	2	18	y	0.00	0	20	0	20	n	0.00	0	25	0	25	n	0.14	1	6	1	6	n	0.00	0	20	0	20	n	0.09	2	20	2	20	y	0.05	1	19	1	19	n	0.00	0	15	0	15	n	0.00	0	16	0	16	n	0.13	2	13	2	13	y	0.07	2	28	2	28	y	ENSMUSG00000005674.10	Tomm40l	chr1	protein_coding	translocase of outer mitochondrial membrane 40-like
known_NIR_416	chr1	171052690	171052837	+	171052690	171052853	A3SS	ENSMUST00000005824.12	known	0.01	78	11933	78	11933	y	0.01	85	13030	85	13030	y	0.01	44	6278	44	6278	y	0.01	93	12695	93	12695	y	0.01	85	11822	85	11822	y	0.01	22	4294	22	4294	y	0.01	106	15033	106	15033	y	0.01	33	5194	33	5194	y	0.01	102	13518	102	13518	y	0.01	164	21376	164	21376	y	0.01	128	17784	128	17784	y	0.01	122	15083	122	15083	y	ENSMUSG00000005681.13	Apoa2	chr1	protein_coding	apolipoprotein A-II
known_NIR_417	chr1	171052690	171052837	+	171052690	171052856	A3SS	ENSMUST00000111321.8	known	0.01	78	14175	78	14175	y	0.01	85	15265	85	15265	y	0.01	44	6867	44	6867	y	0.01	93	14837	93	14837	y	0.01	85	13944	85	13944	y	0.00	22	4823	22	4823	y	0.01	106	17558	106	17558	y	0.01	33	5915	33	5915	y	0.01	102	15689	102	15689	y	0.01	164	24655	164	24655	y	0.01	128	20793	128	20793	y	0.01	122	17187	122	17187	y	ENSMUSG00000005681.13	Apoa2	chr1	protein_coding	apolipoprotein A-II
known_NIR_418	chr1	171052690	171052837	+	171052690	171052868	A3SS	ENSMUST00000111320.8	known	0.17	78	382	78	382	y	0.16	85	451	85	451	y	0.20	44	172	44	172	y	0.19	93	404	93	404	y	0.19	85	356	85	356	y	0.13	22	149	22	149	y	0.18	106	480	106	480	y	0.19	33	141	33	141	y	0.19	102	428	102	428	y	0.19	164	680	164	680	y	0.19	128	530	128	530	y	0.22	122	441	122	441	y	ENSMUSG00000005681.13	Apoa2	chr1	protein_coding	apolipoprotein A-II
known_NIR_419	chr1	171052690	171052853	+	171052690	171052856	A3SS	ENSMUST00000111321.8	known	0.46	11933	14175	11933	14175	y	0.46	13030	15265	13030	15265	y	0.48	6278	6867	6278	6867	y	0.46	12695	14837	12695	14837	y	0.46	11822	13944	11822	13944	y	0.47	4294	4823	4294	4823	y	0.46	15033	17558	15033	17558	y	0.47	5194	5915	5194	5915	y	0.46	13518	15689	13518	15689	y	0.46	21376	24655	21376	24655	y	0.46	17784	20793	17784	20793	y	0.47	15083	17187	15083	17187	y	ENSMUSG00000005681.13	Apoa2	chr1	protein_coding	apolipoprotein A-II
known_NIR_420	chr1	171052690	171052868	+	171052690	171052853	A3SS	ENSMUST00000005824.12	known	0.03	382	11933	382	11933	y	0.03	451	13030	451	13030	y	0.03	172	6278	172	6278	y	0.03	404	12695	404	12695	y	0.03	356	11822	356	11822	y	0.03	149	4294	149	4294	y	0.03	480	15033	480	15033	y	0.03	141	5194	141	5194	y	0.03	428	13518	428	13518	y	0.03	680	21376	680	21376	y	0.03	530	17784	530	17784	y	0.03	441	15083	441	15083	y	ENSMUSG00000005681.13	Apoa2	chr1	protein_coding	apolipoprotein A-II
known_NIR_421	chr1	171052690	171052868	+	171052690	171052856	A3SS	ENSMUST00000111321.8	known	0.03	382	14175	382	14175	y	0.03	451	15265	451	15265	y	0.02	172	6867	172	6867	y	0.03	404	14837	404	14837	y	0.02	356	13944	356	13944	y	0.03	149	4823	149	4823	y	0.03	480	17558	480	17558	y	0.02	141	5915	141	5915	y	0.03	428	15689	428	15689	y	0.03	680	24655	680	24655	y	0.02	530	20793	530	20793	y	0.03	441	17187	441	17187	y	ENSMUSG00000005681.13	Apoa2	chr1	protein_coding	apolipoprotein A-II
known_NIR_422	chr1	171057656	171058491	-	171057656	171058565	A5SS	ENSMUST00000079957.12	known	0.00	0	129	0	129	n	0.00	0	141	0	141	n	0.00	0	176	0	176	n	0.00	0	47	0	47	n	0.00	0	134	0	134	n	0.02	2	105	2	105	y	0.00	0	112	0	112	n	0.00	0	58	0	58	n	0.00	0	67	0	67	n	0.02	1	59	1	59	n	0.00	0	79	0	79	n	0.00	0	76	0	76	n	ENSMUSG00000058715.12	Fcer1g	chr1	protein_coding	Fc receptor, IgE, high affinity I, gamma polypeptide
known_NIR_423	chr1	171066963	171067597	-	171066963	171068516	A5SS	ENSMUST00000013737.13	known	0.00	0	462	0	462	n	0.00	0	369	0	369	n	0.00	2	597	2	597	y	0.00	0	576	0	576	n	0.00	1	614	1	614	n	0.00	1	302	1	302	n	0.01	7	849	7	849	y	0.00	1	323	1	323	n	0.00	0	429	0	429	n	0.00	1	850	1	850	n	0.00	0	550	0	550	n	0.00	2	737	2	737	y	ENSMUSG00000013593.13	Ndufs2	chr1	protein_coding	NADH:ubiquinone oxidoreductase core subunit S2
known_NIR_424	chr1	171097984	171098773	+	171098259	171098773	A5SS	ENSMUST00000138904.2	known	1.00	16	0	16	0	n	0.80	8	2	8	2	y	1.00	14	0	14	0	n	1.00	11	0	11	0	n	1.00	17	0	17	0	n	1.00	15	0	15	0	n	0.95	21	1	21	1	n	1.00	13	0	13	0	n	1.00	9	0	9	0	n	1.00	22	0	22	0	n	1.00	15	0	15	0	n	1.00	13	0	13	0	n	ENSMUSG00000052423.16	B4galt3	chr1	protein_coding	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3
known_NIR_425	chr1	171097984;171098259	171098153;171098773	+	171097984	171098773	cassetteExon	ENSMUST00000064272.10	known	0.00	0.0	16	0;0	16	n	0.20	2.0	8	2;2	8	y	0.00	0.0	14	0;0	14	n	0.00	0.0	11	0;0	11	n	0.00	0.0	17	0;0	17	n	0.00	0.0	15	0;0	15	n	0.02	0.5	21	0;1	21	n	0.00	0.0	13	0;0	13	n	0.00	0.0	9	0;0	9	n	0.00	0.0	22	0;0	22	n	0.03	0.5	15	1;0	15	n	0.00	0.0	13	0;0	13	n	ENSMUSG00000052423.16	B4galt3	chr1	protein_coding	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3
known_NIR_426	chr1	171098943	171099398	+	171098943	171099277	A3SS	ENSMUST00000064272.10	known	0.11	2	17	2	17	y	0.21	3	11	3	11	y	0.12	3	22	3	22	y	0.26	5	14	5	14	y	0.07	2	27	2	27	y	0.00	0	10	0	10	n	0.10	4	38	4	38	y	0.14	1	6	1	6	n	0.16	3	16	3	16	y	0.11	4	34	4	34	y	0.19	3	13	3	13	y	0.11	2	17	2	17	y	ENSMUSG00000052423.16	B4galt3	chr1	protein_coding	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3
known_NIR_427	chr1	171113174	171114184	-	171113174	171113923	A5SS	ENSMUST00000065941.12	known	0.08	3	34	3	34	y	0.06	1	17	1	17	n	0.05	2	35	2	35	y	0.00	0	32	0	32	n	0.03	1	38	1	38	n	0.11	2	16	2	16	y	0.00	0	25	0	25	n	0.05	1	21	1	21	n	0.00	0	20	0	20	n	0.00	0	30	0	30	n	0.00	0	36	0	36	n	0.03	1	35	1	35	n	ENSMUSG00000053483.16	Usp21	chr1	protein_coding	ubiquitin specific peptidase 21
known_NIR_428	chr1	171116544	171117091	-	171116544	171116744	A5SS	ENSMUST00000138974.2	known	0.01	4	466	4	466	y	0.01	7	547	7	547	y	0.01	4	589	4	589	y	0.00	0	479	0	479	n	0.01	6	573	6	573	y	0.01	4	327	4	327	y	0.00	2	573	2	573	y	0.00	1	304	1	304	n	0.00	2	406	2	406	y	0.01	4	626	4	626	y	0.01	5	544	5	544	y	0.01	3	594	3	594	y	ENSMUSG00000062963.11	Ufc1	chr1	protein_coding	ubiquitin-fold modifier conjugating enzyme 1
known_NIR_429	chr1	171116544	171117091	-	171116544;171116834	171116744;171117091	ES	ENSMUST00000080001.9	known	0.01	4	430.5	4	466;395	y	0.01	7	522.5	7	547;498	y	0.01	4	573.0	4	589;557	y	0.00	0	435.0	0	479;391	n	0.01	6	543.5	6	573;514	y	0.01	4	327.5	4	327;328	y	0.00	2	540.5	2	573;508	y	0.00	1	291.0	1	304;278	n	0.01	2	381.0	2	406;356	y	0.01	4	633.5	4	626;641	y	0.01	5	510.0	5	544;476	y	0.01	3	558.0	3	594;522	y	ENSMUSG00000062963.11	Ufc1	chr1	protein_coding	ubiquitin-fold modifier conjugating enzyme 1
known_NIR_430	chr1	171117167	171117428	-	171117167	171117457	A5SS	ENSMUST00000080001.9	known	0.00	1	529	1	529	n	0.01	8	559	8	559	y	0.00	3	698	3	698	y	0.01	3	465	3	465	y	0.00	1	691	1	691	n	0.00	0	377	0	377	n	0.00	2	630	2	630	y	0.00	0	370	0	370	n	0.01	4	462	4	462	y	0.00	1	791	1	791	n	0.01	4	604	4	604	y	0.01	5	640	5	640	y	ENSMUSG00000062963.11	Ufc1	chr1	protein_coding	ubiquitin-fold modifier conjugating enzyme 1
known_NIR_431	chr1	171157094	171158802	+	171157094	171158821	A3SS	ENSMUST00000111300.8	known	0.00	0	22	0	22	n	0.00	0	14	0	14	n	0.06	1	16	1	16	n	0.00	0	26	0	26	n	0.06	1	15	1	15	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	22	0	22	n	0.05	1	20	1	20	n	0.17	2	10	2	10	y	0.05	1	19	1	19	n	ENSMUSG00000013973.13	Dedd	chr1	protein_coding	death effector domain-containing
known_NIR_432	chr1	171157094	171165820	+	171157094;171158853	171158802;171165820	ES	ENSMUST00000111299.8	known	0.30	10	23.5	10	0;47	n	0.36	10	17.5	10	0;35	n	0.56	27	21.0	27	1;41	n	0.43	16	21.5	16	0;43	n	0.56	29	22.5	29	1;44	n	0.60	13	8.5	13	0;17	n	0.60	28	19.0	28	0;38	n	0.70	23	10.0	23	0;20	n	0.46	15	17.5	15	0;35	n	0.36	16	29.0	16	1;57	n	0.53	17	15.0	17	2;28	y	0.33	10	20.0	10	1;39	n	ENSMUSG00000013973.13	Dedd	chr1	protein_coding	death effector domain-containing
known_NIR_433	chr1	171157094	171165820	+	171157094;171158853	171158821;171165820	ES	ENSMUST00000111300.8	known	0.22	10	34.5	10	22;47	y	0.29	10	24.5	10	14;35	y	0.49	27	28.5	27	16;41	y	0.32	16	34.5	16	26;43	y	0.50	29	29.5	29	15;44	y	0.53	13	11.5	13	6;17	y	0.53	28	24.5	28	11;38	y	0.65	23	12.5	23	5;20	y	0.34	15	28.5	15	22;35	y	0.29	16	38.5	16	20;57	y	0.47	17	19.0	17	10;28	y	0.26	10	29.0	10	19;39	y	ENSMUSG00000013973.13	Dedd	chr1	protein_coding	death effector domain-containing
known_NIR_434	chr1	171157260	171158821	+	171157094	171158821	A5SS	ENSMUST00000111300.8	known	0.00	0	22	0	22	n	0.36	8	14	8	14	y	0.27	6	16	6	16	y	0.19	6	26	6	26	y	0.25	5	15	5	15	y	0.54	7	6	7	6	y	0.39	7	11	7	11	y	0.50	5	5	5	5	y	0.08	2	22	2	22	y	0.29	8	20	8	20	y	0.38	6	10	6	10	y	0.14	3	19	3	19	y	ENSMUSG00000013973.13	Dedd	chr1	protein_coding	death effector domain-containing
known_NIR_435	chr1	171157260	171165820	+	171157094	171165820	A5SS	ENSMUST00000064950.11	known	0.09	1	10	1	10	n	0.17	2	10	2	10	y	0.21	7	27	7	27	y	0.20	4	16	4	16	y	0.17	6	29	6	29	y	0.13	2	13	2	13	y	0.07	2	28	2	28	y	0.08	2	23	2	23	y	0.00	0	15	0	15	n	0.27	6	16	6	16	y	0.15	3	17	3	17	y	0.17	2	10	2	10	y	ENSMUSG00000013973.13	Dedd	chr1	protein_coding	death effector domain-containing
known_NIR_436	chr1	171157260	171165820	+	171157260;171158853	171158821;171165820	ES	ENSMUST00000142063.8	known	0.04	1	23.5	1	0;47	n	0.09	2	21.5	2	8;35	y	0.23	7	23.5	7	6;41	y	0.14	4	24.5	4	6;43	y	0.20	6	24.5	6	5;44	y	0.14	2	12.0	2	7;17	y	0.08	2	22.5	2	7;38	y	0.14	2	12.5	2	5;20	y	0.00	0	18.5	0	2;35	n	0.16	6	32.5	6	8;57	y	0.15	3	17.0	3	6;28	y	0.09	2	21.0	2	3;39	y	ENSMUSG00000013973.13	Dedd	chr1	protein_coding	death effector domain-containing
known_NIR_437	chr1	171157260	171165820	+	171158853	171165820	A5SS&ES	ENSMUST00000111300.8	known	0.02	1	47	1	47	n	0.05	2	35	2	35	y	0.15	7	41	7	41	y	0.09	4	43	4	43	y	0.12	6	44	6	44	y	0.11	2	17	2	17	y	0.05	2	38	2	38	y	0.09	2	20	2	20	y	0.00	0	35	0	35	n	0.10	6	57	6	57	y	0.10	3	28	3	28	y	0.05	2	39	2	39	y	ENSMUSG00000013973.13	Dedd	chr1	protein_coding	death effector domain-containing
known_NIR_438	chr1	171157719	171165820	+	171157094	171165820	A5SS	ENSMUST00000064950.11	known	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	27	0	27	n	0.00	0	16	0	16	n	0.00	0	29	0	29	n	0.00	0	13	0	13	n	0.07	2	28	2	28	y	0.00	0	23	0	23	n	0.00	0	15	0	15	n	0.00	0	16	0	16	n	0.00	0	17	0	17	n	0.00	0	10	0	10	n	ENSMUSG00000013973.13	Dedd	chr1	protein_coding	death effector domain-containing
known_NIR_439	chr1	171157719	171165820	+	171158853	171165820	A5SS&ES	ENSMUST00000111300.8	known	0.00	0	47	0	47	n	0.00	0	35	0	35	n	0.00	0	41	0	41	n	0.00	0	43	0	43	n	0.00	0	44	0	44	n	0.00	0	17	0	17	n	0.05	2	38	2	38	y	0.00	0	20	0	20	n	0.00	0	35	0	35	n	0.00	0	57	0	57	n	0.00	0	28	0	28	n	0.00	0	39	0	39	n	ENSMUSG00000013973.13	Dedd	chr1	protein_coding	death effector domain-containing
known_NIR_440	chr1	171172568	171172759	-	171172568	171173104	A5SS	ENSMUST00000111289.8	known	0.45	20	24	20	24	y	0.45	15	18	15	18	y	0.35	22	40	22	40	y	0.27	14	38	14	38	y	0.42	28	39	28	39	y	0.33	10	20	10	20	y	0.54	31	26	31	26	y	0.29	9	22	9	22	y	0.48	24	26	24	26	y	0.49	37	38	37	38	y	0.34	11	21	11	21	y	0.50	30	30	30	30	y	ENSMUSG00000013997.11	Nit1	chr1	protein_coding	nitrilase 1
known_NIR_441	chr1	171172568	171173104	-	171172568	171173136	A5SS	ENSMUST00000111296.8	known	0.15	24	131	24	131	y	0.12	18	137	18	137	y	0.22	40	140	40	140	y	0.14	38	240	38	240	y	0.14	39	249	39	249	y	0.14	20	124	20	124	y	0.10	26	234	26	234	y	0.14	22	137	22	137	y	0.15	26	143	26	143	y	0.16	38	201	38	201	y	0.13	21	137	21	137	y	0.13	30	200	30	200	y	ENSMUSG00000013997.11	Nit1	chr1	protein_coding	nitrilase 1
known_NIR_442	chr1	171172568	171173136	-	171172568	171172759	A5SS	ENSMUST00000156856.8	known	0.87	131	20	131	20	y	0.90	137	15	137	15	y	0.86	140	22	140	22	y	0.94	240	14	240	14	y	0.90	249	28	249	28	y	0.93	124	10	124	10	y	0.88	234	31	234	31	y	0.94	137	9	137	9	y	0.86	143	24	143	24	y	0.84	201	37	201	37	y	0.93	137	11	137	11	y	0.87	200	30	200	30	y	ENSMUSG00000013997.11	Nit1	chr1	protein_coding	nitrilase 1
known_NIR_443	chr1	171172568;171172880	171172759;171173136	-	171172568	171173136	cassetteExon	ENSMUST00000111296.8	known	0.07	10.0	131	20;0	131	n	0.05	7.5	137	15;0	137	n	0.08	12.0	140	22;2	140	y	0.03	8.0	240	14;2	240	y	0.06	14.5	249	28;1	249	n	0.04	5.5	124	10;1	124	n	0.07	17.0	234	31;3	234	y	0.04	5.5	137	9;2	137	y	0.08	12.0	143	24;0	143	n	0.09	20.0	201	37;3	201	y	0.04	5.5	137	11;0	137	n	0.07	15.0	200	30;0	200	n	ENSMUSG00000013997.11	Nit1	chr1	protein_coding	nitrilase 1
known_NIR_444	chr1	171184396	171185356	+	171184396	171185418	A3SS	ENSMUST00000135941.8	known	0.00	0	356	0	356	n	0.00	0	368	0	368	n	0.01	2	340	2	340	y	0.00	0	302	0	302	n	0.00	0	339	0	339	n	0.01	1	164	1	164	n	0.00	0	461	0	461	n	0.01	1	170	1	170	n	0.00	0	296	0	296	n	0.00	0	423	0	423	n	0.00	2	428	2	428	y	0.00	0	412	0	412	n	ENSMUSG00000006412.11	Pfdn2	chr1	protein_coding	prefoldin 2
known_NIR_445	chr1	171239008	171242005	+	171239008	171241941	A3SS	ENSMUST00000159207.8	known	0.96	48	2	48	2	y	0.82	27	6	27	6	y	0.87	52	8	52	8	y	0.95	42	2	42	2	y	0.88	49	7	49	7	y	0.96	26	1	26	1	n	0.93	39	3	39	3	y	1.00	30	0	30	0	n	0.92	36	3	36	3	y	0.96	69	3	69	3	y	1.00	38	0	38	0	n	0.95	38	2	38	2	y	ENSMUSG00000026641.14	Usf1	chr1	protein_coding	upstream transcription factor 1
known_NIR_446	chr1	171239430	171242005	+	171239008	171242005	A5SS	ENSMUST00000001284.13	known	0.02	1	48	1	48	n	0.04	1	27	1	27	n	0.05	3	52	3	52	y	0.05	2	42	2	42	y	0.06	3	49	3	49	y	0.07	2	26	2	26	y	0.00	0	39	0	39	n	0.03	1	30	1	30	n	0.08	3	36	3	36	y	0.03	2	69	2	69	y	0.03	1	38	1	38	n	0.05	2	38	2	38	y	ENSMUSG00000026641.14	Usf1	chr1	protein_coding	upstream transcription factor 1
known_NIR_447	chr1	171243367	171243703	+	171243398	171243703	A5SS	ENSMUST00000159207.8	known	0.24	14	45	14	45	y	0.45	21	26	21	26	y	0.46	33	38	33	38	y	0.41	35	50	35	50	y	0.45	38	46	38	46	y	0.36	17	30	17	30	y	0.44	31	39	31	39	y	0.48	24	26	24	26	y	0.33	22	45	22	45	y	0.38	30	50	30	50	y	0.37	20	34	20	34	y	0.40	29	43	29	43	y	ENSMUSG00000026641.14	Usf1	chr1	protein_coding	upstream transcription factor 1
known_NIR_448	chr1	171246703	171246906	+	171246536	171246906	A5SS	ENSMUST00000193060.2	known	0.97	74	2	74	2	y	1.00	77	0	77	0	n	0.99	90	1	90	1	n	0.99	70	1	70	1	n	0.99	110	1	110	1	n	1.00	56	0	56	0	n	1.00	78	0	78	0	n	1.00	64	0	64	0	n	1.00	80	0	80	0	n	1.00	91	0	91	0	n	0.99	131	1	131	1	n	1.00	129	0	129	0	n	ENSMUSG00000103711.2	Tstd1	chr1	protein_coding	thiosulfate sulfurtransferase (rhodanese)-like domain containing 1
known_NIR_449	chr1	171701006	171712155	+	171701006	171712152	A3SS	ENSMUST00000155802.9	known	0.14	1	6	1	6	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.50	1	1	1	1	n	0.43	6	8	6	8	y	-	-	-	-	-	-	0.45	5	6	5	6	y	-	-	-	-	-	-	0.20	1	4	1	4	n	0.50	2	2	2	2	n	0.29	2	5	2	5	n	0.40	2	3	2	3	n	ENSMUSG00000038147.15	Cd84	chr1	protein_coding	CD84 antigen
known_NIR_450	chr1	171903095;171903307	171903193;171908779	-	171903095	171908779	cassetteExon	ENSMUST00000003550.11	known	0.00	0.0	60	0;0	60	n	0.05	2.0	36	4;0	36	n	0.02	2.0	96	2;2	96	y	0.01	1.0	94	0;2	94	n	0.01	1.0	101	2;0	101	n	0.01	0.5	64	1;0	64	n	0.01	0.5	67	1;0	67	n	0.00	0.0	72	0;0	72	n	0.00	0.0	57	0;0	57	n	0.02	1.5	89	1;2	89	n	0.00	0.0	49	0;0	49	n	0.03	2.0	71	1;3	71	n	ENSMUSG00000003458.13	Ncstn	chr1	protein_coding	nicastrin
known_NIR_451	chr1	171931826;171932119	171931979;171932753	+	171931826	171932753	cassetteExon	ENSMUST00000135192.8	known	0.01	1.0	94	1;1	94	n	0.00	0.0	71	0;0	71	n	0.01	2.5	317	2;3	317	y	0.00	0.0	158	0;0	158	n	0.01	2.0	235	1;3	235	n	0.01	1.5	170	1;2	170	n	0.00	0.5	170	0;1	170	n	0.01	1.0	172	1;1	172	n	0.01	1.0	94	2;0	94	n	0.00	0.5	178	0;1	178	n	0.01	1.0	111	2;0	111	n	0.00	0.0	202	0;0	202	n	ENSMUSG00000026553.18	Copa	chr1	protein_coding	coatomer protein complex subunit alpha
known_NIR_452	chr1	171938141	171938217	+	171938141	171938244	A3SS	ENSMUST00000135192.8	known	0.01	1	176	1	176	n	0.00	0	115	0	115	n	0.00	0	467	0	467	n	0.00	0	235	0	235	n	0.01	4	300	4	300	y	0.02	5	234	5	234	y	0.02	4	197	4	197	y	0.02	5	226	5	226	y	0.01	2	162	2	162	y	0.01	2	255	2	255	y	0.00	0	140	0	140	n	0.01	2	236	2	236	y	ENSMUSG00000026553.18	Copa	chr1	protein_coding	coatomer protein complex subunit alpha
known_NIR_453	chr1	171954415	171956198	+	171954415	171957469	A3SS	ENSMUST00000111252.4	known	1.00	204	0	204	0	n	1.00	175	0	175	0	n	1.00	279	0	279	0	n	1.00	313	0	313	0	n	1.00	301	0	301	0	n	1.00	231	0	231	0	n	0.99	334	2	334	2	y	1.00	176	0	176	0	n	1.00	215	0	215	0	n	1.00	346	0	346	0	n	1.00	254	0	254	0	n	1.00	220	0	220	0	n	ENSMUSG00000003464.14	Pex19	chr1	protein_coding	peroxisomal biogenesis factor 19
known_NIR_454	chr1	171956887	171957469	+	171954415	171957469	A5SS	ENSMUST00000111252.4	known	1.00	194	0	194	0	n	1.00	154	0	154	0	n	1.00	248	0	248	0	n	1.00	249	0	249	0	n	1.00	317	0	317	0	n	1.00	162	0	162	0	n	0.99	346	2	346	2	y	1.00	182	0	182	0	n	1.00	210	0	210	0	n	1.00	341	0	341	0	n	1.00	229	0	229	0	n	1.00	253	0	253	0	n	ENSMUSG00000003464.14	Pex19	chr1	protein_coding	peroxisomal biogenesis factor 19
known_NIR_455	chr1	171956887	171957473	+	171956887	171957469	A3SS	ENSMUST00000075895.9	known	0.01	2	194	2	194	y	0.00	0	154	0	154	n	0.01	3	248	3	248	y	0.00	0	249	0	249	n	0.00	0	317	0	317	n	0.01	1	162	1	162	n	0.01	3	346	3	346	y	0.00	0	182	0	182	n	0.02	4	210	4	210	y	0.01	2	341	2	341	y	0.00	1	229	1	229	n	0.00	0	253	0	253	n	ENSMUSG00000003464.14	Pex19	chr1	protein_coding	peroxisomal biogenesis factor 19
known_NIR_456	chr1	171961611	171961754	+	171961611	171961774	A3SS	ENSMUST00000075895.9	known	0.00	0	210	0	210	n	0.00	0	168	0	168	n	0.00	0	247	0	247	n	0.01	3	285	3	285	y	0.00	0	311	0	311	n	0.00	0	162	0	162	n	0.00	0	315	0	315	n	0.00	0	159	0	159	n	0.00	0	159	0	159	n	0.00	1	318	1	318	n	0.00	0	206	0	206	n	0.01	2	203	2	203	y	ENSMUSG00000003464.14	Pex19	chr1	protein_coding	peroxisomal biogenesis factor 19
known_NIR_457	chr1	171975905	171976816	+	171975735	171976816	A5SS	ENSMUST00000193638.6	known	0.47	38	43	38	43	y	0.55	42	35	42	35	y	0.49	84	88	84	88	y	0.44	76	96	76	96	y	0.51	107	103	107	103	y	0.53	54	48	54	48	y	0.51	82	80	82	80	y	0.53	64	56	64	56	y	0.50	53	54	53	54	y	0.56	100	79	100	79	y	0.48	56	61	56	61	y	0.43	63	83	63	83	y	ENSMUSG00000026554.16	Dcaf8	chr1	protein_coding	DDB1 and CUL4 associated factor 8
known_NIR_458	chr1	171976688	171976816	+	171975735	171976816	A5SS	ENSMUST00000193638.6	known	0.00	0	43	0	43	n	0.00	0	35	0	35	n	0.05	5	88	5	88	y	0.02	2	96	2	96	y	0.00	0	103	0	103	n	0.04	2	48	2	48	y	0.00	0	80	0	80	n	0.00	0	56	0	56	n	0.02	1	54	1	54	n	0.01	1	79	1	79	n	0.00	0	61	0	61	n	0.01	1	83	1	83	n	ENSMUSG00000026554.16	Dcaf8	chr1	protein_coding	DDB1 and CUL4 associated factor 8
known_NIR_459	chr1	171976688	171976816	+	171975905	171976816	A5SS	ENSMUST00000192704.6	known	0.00	0	38	0	38	n	0.00	0	42	0	42	n	0.06	5	84	5	84	y	0.03	2	76	2	76	y	0.00	0	107	0	107	n	0.04	2	54	2	54	y	0.00	0	82	0	82	n	0.00	0	64	0	64	n	0.02	1	53	1	53	n	0.01	1	100	1	100	n	0.00	0	56	0	56	n	0.02	1	63	1	63	n	ENSMUSG00000026554.16	Dcaf8	chr1	protein_coding	DDB1 and CUL4 associated factor 8
known_NIR_460	chr1	172013935;172014479	172014422;172014920	+	172013935	172014920	cassetteExon	ENSMUST00000193638.6	known	0.99	161.0	1	170;152	1	n	1.00	152.0	0	160;144	0	n	1.00	292.5	0	314;271	0	n	1.00	256.0	0	264;248	0	n	1.00	320.5	0	347;294	0	n	0.99	166.5	1	177;156	1	n	0.99	276.5	2	287;266	2	y	1.00	172.0	0	190;154	0	n	1.00	203.0	0	212;194	0	n	0.99	307.5	2	319;296	2	y	1.00	238.0	0	257;219	0	n	0.99	262.0	2	282;242	2	y	ENSMUSG00000026554.16	Dcaf8	chr1	protein_coding	DDB1 and CUL4 associated factor 8
known_NIR_461	chr1	172016636	172020085	+	172016636;172018646	172018411;172020085	ES	ENSMUST00000193638.6	known	0.99	189	1.5	189	1;2	n	1.00	196	0.5	196	0;1	n	1.00	280	0.5	280	1;0	n	1.00	211	1.0	211	0;2	n	0.99	319	2.5	319	0;5	n	1.00	129	0.5	129	0;1	n	0.99	312	2.5	312	2;3	y	1.00	164	0.5	164	0;1	n	1.00	175	0.0	175	0;0	n	1.00	314	0.5	314	0;1	n	1.00	217	0.0	217	0;0	n	1.00	287	0.0	287	0;0	n	ENSMUSG00000026554.16	Dcaf8	chr1	protein_coding	DDB1 and CUL4 associated factor 8
known_NIR_462	chr1	172026833	172028041	-	172026833	172027975	A5SS	ENSMUST00000013842.12	known	0.00	0	25	0	25	n	0.00	0	13	0	13	n	0.00	0	109	0	109	n	0.00	0	18	0	18	n	0.00	0	36	0	36	n	0.06	2	29	2	29	y	0.00	0	41	0	41	n	0.00	0	29	0	29	n	0.00	0	33	0	33	n	0.00	0	41	0	41	n	0.04	1	24	1	24	n	0.00	0	25	0	25	n	ENSMUSG00000013698.13	Pea15a	chr1	protein_coding	phosphoprotein enriched in astrocytes 15A
known_NIR_463	chr1	172146990	172147160	+	172146990	172147151	A3SS	ENSMUST00000139528.8	known	0.00	0	11	0	11	n	0.00	0	42	0	42	n	0.03	2	59	2	59	y	0.00	0	15	0	15	n	0.00	0	31	0	31	n	0.00	0	24	0	24	n	0.00	0	43	0	43	n	0.00	0	29	0	29	n	0.00	0	20	0	20	n	0.00	0	25	0	25	n	0.00	0	32	0	32	n	0.00	0	41	0	41	n	ENSMUSG00000038034.16	Igsf8	chr1	protein_coding	immunoglobulin superfamily, member 8
known_NIR_464	chr1	172327899	172332706	+	172327899	172332687	A3SS	ENSMUST00000138296.8	known	0.00	0	17	0	17	n	0.00	0	31	0	31	n	0.05	5	93	5	93	y	0.00	0	19	0	19	n	0.00	0	46	0	46	n	0.00	0	17	0	17	n	0.00	0	55	0	55	n	0.00	0	13	0	13	n	0.00	0	30	0	30	n	0.00	0	30	0	30	n	0.00	0	30	0	30	n	0.00	0	28	0	28	n	ENSMUSG00000026547.16	Tagln2	chr1	protein_coding	transgelin 2
known_NIR_465	chr1	172525767	172658850	+	172525767	172525981	3pMXE	ENSMUST00000038495.5	known	0.00	0	2227	0	2227	n	0.00	0	1831	0	1831	n	0.00	0	3235	0	3235	n	0.00	2	2112	2	2112	y	0.00	0	3283	0	3283	n	0.00	2	925	2	925	y	0.00	0	2362	0	2362	n	0.00	0	1593	0	1593	n	0.00	0	1221	0	1221	n	0.00	0	1767	0	1767	n	0.00	0	1091	0	1091	n	0.00	0	1740	0	1740	n	ENSMUSG00000037942.6	Crp	chr1	protein_coding	C-reactive protein, pentraxin-related
known_NIR_466	chr1	173690449;173693123	173692965;173698944	-	173690449	173698944	cassetteExon	ENSMUST00000186442.7	known	0.78	18.0	5	29;7	5	y	0.89	8.5	1	16;1	1	n	0.88	7.5	1	9;6	1	n	1.00	10.0	0	15;5	0	n	1.00	14.5	0	26;3	0	n	0.80	4.0	1	7;1	1	n	1.00	23.5	0	35;12	0	n	0.60	1.5	1	3;0	1	n	0.77	10.0	3	19;1	3	n	0.92	11.0	1	20;2	1	n	0.91	10.0	1	17;3	1	n	1.00	9.5	0	12;7	0	n	ENSMUSG00000090272.10	Mndal	chr1	protein_coding	myeloid nuclear differentiation antigen like
known_NIR_467	chr1	173693123	173698944	-	173693123	173695766	5pMXE	ENSMUST00000189474.7	known	0.58	7	5	7	5	y	0.17	1	5	1	5	n	0.75	6	2	6	2	n	0.62	5	3	5	3	n	0.50	3	3	3	3	n	1.00	1	0	1	0	n	0.50	12	12	12	12	y	0.00	0	2	0	2	n	0.12	1	7	1	7	n	0.15	2	11	2	11	y	0.27	3	8	3	8	y	0.29	7	17	7	17	y	ENSMUSG00000090272.10	Mndal	chr1	protein_coding	myeloid nuclear differentiation antigen like
known_NIR_468	chr1	173702038	173707491	-	173702038	173703142	5pMXE	ENSMUST00000186442.7	known	0.17	2	10	2	10	y	-	-	-	-	-	-	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.00	0	21	0	21	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.60	3	2	3	2	n	0.14	1	6	1	6	n	ENSMUSG00000090272.10	Mndal	chr1	protein_coding	myeloid nuclear differentiation antigen like
known_NIR_469	chr1	173702038	173707491	-	173702038;173703426	173703142;173707491	ES	ENSMUST00000188804.7	known	0.17	2	9.5	2	10;9	y	0.00	0	0.5	0	0;1	n	0.00	0	8.0	0	16;0	n	0.00	0	5.0	0	8;2	n	0.00	0	13.5	0	21;6	n	0.00	0	4.0	0	6;2	n	0.00	0	6.0	0	5;7	n	0.00	0	3.5	0	6;1	n	0.00	0	4.5	0	5;4	n	0.00	0	2.5	0	4;1	n	0.55	3	2.5	3	2;3	n	0.12	1	7.5	1	6;9	n	ENSMUSG00000090272.10	Mndal	chr1	protein_coding	myeloid nuclear differentiation antigen like
known_NIR_470	chr1	173702038	173707491	-	173703426	173707491	3pMXE	ENSMUST00000187636.2	known	0.18	2	9	2	9	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.50	3	3	3	3	n	0.10	1	9	1	9	n	ENSMUSG00000090272.10	Mndal	chr1	protein_coding	myeloid nuclear differentiation antigen like
known_NIR_471	chr1	175433748	175437203	-	175433748;175435586	175435383;175437203	ES	ENSMUST00000027810.14	known	0.00	4	827.0	4	840;814	y	0.00	0	732.5	0	751;714	n	0.00	2	1007.5	2	1010;1005	y	0.00	3	1084.5	3	1077;1092	y	0.00	0	800.5	0	853;748	n	0.00	0	462.5	0	462;463	n	0.00	0	992.0	0	1021;963	n	0.00	0	397.0	0	425;369	n	0.00	3	767.5	3	804;731	y	0.00	0	1087.5	0	1088;1087	n	0.00	2	708.0	2	727;689	y	0.00	0	1303.0	0	1403;1203	n	ENSMUSG00000026526.15	Fh1	chr1	protein_coding	fumarate hydratase 1
known_NIR_472	chr1	175450242	175453017	-	175446751	175453017	A3SS	ENSMUST00000027810.14	known	0.01	4	488	4	488	y	0.00	0	395	0	395	n	0.00	0	661	0	661	n	0.00	0	733	0	733	n	0.01	3	474	3	474	y	0.01	3	315	3	315	y	0.00	1	537	1	537	n	0.00	1	241	1	241	n	0.01	3	449	3	449	y	0.01	5	630	5	630	y	0.00	0	324	0	324	n	0.00	0	773	0	773	n	ENSMUSG00000026526.15	Fh1	chr1	protein_coding	fumarate hydratase 1
known_NIR_473	chr1	175459839;175461185	175461032;175465075	+	175459839	175465075	cassetteExon	ENSMUST00000040250.15	known	0.03	17.5	491	16;19	491	y	0.03	13.0	393	10;16	393	y	0.03	15.0	455	12;18	455	y	0.05	42.0	836	39;45	836	y	0.03	18.5	719	24;13	719	y	0.03	11.0	318	12;10	318	y	0.04	29.5	709	28;31	709	y	0.05	20.5	384	24;17	384	y	0.03	16.0	508	13;19	508	y	0.04	31.0	705	36;26	705	y	0.03	15.0	470	18;12	470	y	0.04	23.5	543	32;15	543	y	ENSMUSG00000039783.16	Kmo	chr1	protein_coding	kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)
known_NIR_474	chr1	175476883	175478131	+	175476883	175478169	A3SS	ENSMUST00000140474.8	known	1.00	530	0	530	0	n	1.00	435	0	435	0	n	1.00	458	0	458	0	n	1.00	790	1	790	1	n	1.00	713	1	713	1	n	1.00	322	0	322	0	n	1.00	771	1	771	1	n	1.00	367	0	367	0	n	1.00	494	0	494	0	n	1.00	766	3	766	3	y	1.00	475	0	475	0	n	1.00	575	0	575	0	n	ENSMUSG00000039783.16	Kmo	chr1	protein_coding	kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)
known_NIR_475	chr1	175479274	175482635	+	175479274	175481093	3pMXE	ENSMUST00000142223.8	known	0.01	4	622	4	622	y	0.00	1	495	1	495	n	0.00	0	494	0	494	n	0.00	1	802	1	802	n	0.00	0	723	0	723	n	0.00	0	383	0	383	n	0.00	1	760	1	760	n	0.00	0	374	0	374	n	0.00	1	517	1	517	n	0.00	0	911	0	911	n	0.00	0	563	0	563	n	0.00	0	664	0	664	n	ENSMUSG00000039783.16	Kmo	chr1	protein_coding	kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)
known_NIR_476	chr1	175479274;175481240	175481093;175482635	+	175479274	175482635	cassetteExon	ENSMUST00000140474.8	known	0.99	632.5	4	622;643	4	y	1.00	494.0	1	495;493	1	n	1.00	498.5	0	494;503	0	n	1.00	849.0	1	802;896	1	n	1.00	745.5	0	723;768	0	n	1.00	359.0	0	383;335	0	n	1.00	748.5	1	760;737	1	n	1.00	381.5	0	374;389	0	n	1.00	523.0	1	517;529	1	n	1.00	906.5	0	911;902	0	n	1.00	576.0	0	563;589	0	n	1.00	677.0	0	664;690	0	n	ENSMUSG00000039783.16	Kmo	chr1	protein_coding	kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)
known_NIR_477	chr1	176567655	176570037	-	176567655	176570067	A5SS	ENSMUST00000057037.13	known	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.21	6	22	6	22	y	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.14	1	6	1	6	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.08	1	12	1	12	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000057335.12	Cep170	chr1	protein_coding	centrosomal protein 170
known_NIR_478	chr1	176567655	176570118	-	176567655	176570037	A5SS	ENSMUST00000194727.6	known	1.00	1	0	1	0	n	-	-	-	-	-	-	0.45	5	6	5	6	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	n	ENSMUSG00000057335.12	Cep170	chr1	protein_coding	centrosomal protein 170
known_NIR_479	chr1	176567655	176570118	-	176567655	176570067	A5SS	ENSMUST00000057037.13	known	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.19	5	22	5	22	y	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.11	1	8	1	8	n	0.00	0	6	0	6	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	1	0	1	n	0.33	2	4	2	4	n	ENSMUSG00000057335.12	Cep170	chr1	protein_coding	centrosomal protein 170
known_NIR_480	chr1	176577618	176582732	-	176577726	176582732	A3SS	ENSMUST00000057037.13	known	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.15	3	17	3	17	y	0.33	2	4	2	4	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.17	1	5	1	5	n	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.50	3	3	3	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000057335.12	Cep170	chr1	protein_coding	centrosomal protein 170
known_NIR_481	chr1	176621215	176641462	-	176621215	176634565	5pMXE	ENSMUST00000057037.13	known	1.00	2	0	2	0	n	1.00	1	0	1	0	n	0.73	8	3	8	3	y	1.00	4	0	4	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	n	1.00	3	0	3	0	n	0.91	10	1	10	1	n	1.00	1	0	1	0	n	1.00	8	0	8	0	n	1.00	5	0	5	0	n	1.00	1	0	1	0	n	ENSMUSG00000057335.12	Cep170	chr1	protein_coding	centrosomal protein 170
known_NIR_482	chr1	176653850	176658623	+	176653850;176656549	176656436;176658623	ES	ENSMUST00000150429.8	known	0.32	3	6.5	3	8;5	y	0.33	2	4.0	2	3;5	y	0.06	1	15.0	1	14;16	n	0.14	1	6.0	1	6;6	n	0.15	2	11.5	2	9;14	y	0.14	1	6.0	1	5;7	n	0.19	2	8.5	2	8;9	y	0.12	1	7.0	1	7;7	n	0.24	2	6.5	2	6;7	y	0.00	0	6.5	0	6;7	n	0.00	0	8.5	0	6;11	n	0.07	1	13.0	1	12;14	n	ENSMUSG00000026504.18	Sdccag8	chr1	protein_coding	serologically defined colon cancer antigen 8
known_NIR_483	chr1	176681468	176695778	+	176681468	176689438	3pMXE	ENSMUST00000056773.15	known	1.00	15	0	15	0	n	1.00	12	0	12	0	n	0.90	18	2	18	2	y	1.00	15	0	15	0	n	1.00	22	0	22	0	n	1.00	15	0	15	0	n	1.00	24	0	24	0	n	1.00	11	0	11	0	n	1.00	14	0	14	0	n	1.00	27	0	27	0	n	1.00	12	0	12	0	n	1.00	12	0	12	0	n	ENSMUSG00000026504.18	Sdccag8	chr1	protein_coding	serologically defined colon cancer antigen 8
known_NIR_484	chr1	177271658	177274655	+	177270161	177274655	A5SS	ENSMUST00000195002.2	known	0.00	0	7	0	7	n	0.67	6	3	6	3	n	0.11	3	25	3	25	y	0.12	2	15	2	15	y	0.20	4	16	4	16	y	0.33	4	8	4	8	y	0.30	3	7	3	7	y	0.38	6	10	6	10	y	0.10	1	9	1	9	n	0.12	3	22	3	22	y	0.17	2	10	2	10	y	0.27	3	8	3	8	y	ENSMUSG00000063659.12	Zbtb18	chr1	protein_coding	zinc finger and BTB domain containing 18
known_NIR_485	chr1	177271658	177274655	+	177272388	177274655	5pMXE	ENSMUST00000094276.5	known	0.00	0	10	0	10	n	1.00	6	0	6	0	n	0.38	3	5	3	5	n	0.40	2	3	2	3	n	0.44	4	5	4	5	n	1.00	4	0	4	0	n	0.30	3	7	3	7	y	0.75	6	2	6	2	n	0.25	1	3	1	3	n	0.38	3	5	3	5	n	0.29	2	5	2	5	n	0.33	3	6	3	6	n	ENSMUSG00000063659.12	Zbtb18	chr1	protein_coding	zinc finger and BTB domain containing 18
known_NIR_486	chr1	177272388	177274655	+	177270161	177274655	A5SS	ENSMUST00000195002.2	known	0.59	10	7	10	7	y	0.00	0	3	0	3	n	0.17	5	25	5	25	y	0.17	3	15	3	15	y	0.24	5	16	5	16	y	0.00	0	8	0	8	n	0.50	7	7	7	7	y	0.17	2	10	2	10	y	0.25	3	9	3	9	y	0.19	5	22	5	22	y	0.33	5	10	5	10	y	0.43	6	8	6	8	y	ENSMUSG00000063659.12	Zbtb18	chr1	protein_coding	zinc finger and BTB domain containing 18
known_NIR_487	chr1	178046109	178065478	+	178015523	178065478	A5SS	ENSMUST00000027783.14	known	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.03	1	37	1	37	n	0.00	0	16	0	16	n	0.12	2	15	2	15	y	0.00	0	17	0	17	n	0.05	1	21	1	21	n	0.00	0	20	0	20	n	0.00	0	8	0	8	n	0.00	0	24	0	24	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	ENSMUSG00000026502.14	Desi2	chr1	protein_coding	desumoylating isopeptidase 2
known_NIR_488	chr1	178152878	178157433	-	178156972	178157433	A3SS	ENSMUST00000037748.9	known	0.01	6	404	6	404	y	0.01	6	422	6	422	y	0.01	7	615	7	615	y	0.03	15	433	15	433	y	0.02	10	589	10	589	y	0.01	2	354	2	354	y	0.02	12	662	12	662	y	0.03	9	348	9	348	y	0.05	20	414	20	414	y	0.02	11	518	11	518	y	0.05	25	505	25	505	y	0.04	21	535	21	535	y	ENSMUSG00000039630.11	Hnrnpu	chr1	protein_coding	heterogeneous nuclear ribonucleoprotein U
known_NIR_489	chr1	179356919	179358869	-	179356919	179361198	A5SS	ENSMUST00000150778.2	known	0.98	85	2	85	2	y	1.00	67	0	67	0	n	1.00	130	0	130	0	n	1.00	92	0	92	0	n	1.00	121	0	121	0	n	1.00	57	0	57	0	n	1.00	110	0	110	0	n	1.00	69	0	69	0	n	1.00	74	0	74	0	n	1.00	110	0	110	0	n	1.00	84	0	84	0	n	1.00	111	0	111	0	n	ENSMUSG00000026492.12	Tfb2m	chr1	protein_coding	transcription factor B2, mitochondrial
known_NIR_490	chr1	179359692	179361198	-	179356919	179361198	A3SS	ENSMUST00000150778.2	known	0.96	55	2	55	2	y	1.00	56	0	56	0	n	1.00	99	0	99	0	n	1.00	80	0	80	0	n	1.00	95	0	95	0	n	1.00	35	0	35	0	n	1.00	94	0	94	0	n	1.00	47	0	47	0	n	1.00	63	0	63	0	n	1.00	93	0	93	0	n	1.00	60	0	60	0	n	1.00	86	0	86	0	n	ENSMUSG00000026492.12	Tfb2m	chr1	protein_coding	transcription factor B2, mitochondrial
known_NIR_491	chr1	179370022	179370490	-	179370022	179373387	A5SS	ENSMUST00000129982.8	known	0.33	1	2	1	2	n	0.33	1	2	1	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.50	3	3	3	3	n	1.00	1	0	1	0	n	0.61	11	7	11	7	y	0.60	3	2	3	2	n	0.80	4	1	4	1	n	0.62	5	3	5	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000026492.12	Tfb2m	chr1	protein_coding	transcription factor B2, mitochondrial
known_NIR_492	chr1	179370022	179373387	-	179370022;179372551	179372463;179373387	ES	ENSMUST00000027769.6	known	0.04	2	55.0	2	59;51	y	0.05	2	39.0	2	39;39	y	0.07	5	63.5	5	68;59	y	0.00	0	72.0	0	84;60	n	0.04	3	68.5	3	88;49	y	0.00	0	32.0	0	36;28	n	0.08	7	79.0	7	100;58	y	0.04	2	43.0	2	54;32	y	0.02	1	39.5	1	56;23	n	0.04	3	65.5	3	76;55	y	0.07	3	39.0	3	43;35	y	0.01	1	73.0	1	75;71	n	ENSMUSG00000026492.12	Tfb2m	chr1	protein_coding	transcription factor B2, mitochondrial
known_NIR_493	chr1	179372551;179373023	179372932;179373387	-	179372551	179373387	cassetteExon	ENSMUST00000027769.6	known	0.03	1.5	51	3;0	51	n	0.04	1.5	39	2;1	39	n	0.02	1.0	59	0;2	59	n	0.01	0.5	60	1;0	60	n	0.07	3.5	49	4;3	49	y	0.00	0.0	28	0;0	28	n	0.03	2.0	58	1;3	58	n	0.03	1.0	32	2;0	32	n	0.02	0.5	23	0;1	23	n	0.03	1.5	55	1;2	55	n	0.04	1.5	35	0;3	35	n	0.00	0.0	71	0;0	71	n	ENSMUSG00000026492.12	Tfb2m	chr1	protein_coding	transcription factor B2, mitochondrial
known_NIR_494	chr1	179373023	179373387	-	179370022	179373387	A3SS	ENSMUST00000129982.8	known	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.29	2	5	2	5	n	-	-	-	-	-	-	0.50	3	3	3	3	n	-	-	-	-	-	-	0.30	3	7	3	7	y	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.40	2	3	2	3	n	0.50	3	3	3	3	n	0.00	0	1	0	1	n	ENSMUSG00000026492.12	Tfb2m	chr1	protein_coding	transcription factor B2, mitochondrial
known_NIR_495	chr1	179574085	179574745	-	179574093	179574745	A3SS	ENSMUST00000027768.14	known	0.00	0	63	0	63	n	0.00	0	71	0	71	n	0.11	6	49	6	49	y	0.08	5	60	5	60	y	0.04	4	97	4	97	y	0.06	2	34	2	34	y	0.00	0	87	0	87	n	0.00	0	35	0	35	n	0.06	4	61	4	61	y	0.10	9	80	9	80	y	0.00	0	75	0	75	n	0.04	3	67	3	67	y	ENSMUSG00000026491.14	Ahctf1	chr1	protein_coding	AT hook containing transcription factor 1
known_NIR_496	chr1	179591167	179593443	-	179591238	179593443	A3SS	ENSMUST00000027768.14	known	0.00	0	25	0	25	n	0.00	0	8	0	8	n	0.00	0	35	0	35	n	0.00	0	25	0	25	n	0.00	0	30	0	30	n	0.00	0	26	0	26	n	0.08	2	22	2	22	y	0.00	0	26	0	26	n	0.12	2	14	2	14	y	0.00	0	25	0	25	n	0.00	0	24	0	24	n	0.00	0	39	0	39	n	ENSMUSG00000026491.14	Ahctf1	chr1	protein_coding	AT hook containing transcription factor 1
known_NIR_497	chr1	179912070	179921946	+	179912070;179921751	179921509;179921946	ES	ENSMUST00000097453.9	known	0.27	3	8.0	3	8;8	y	0.71	6	2.5	6	3;2	y	0.48	14	15.0	14	16;14	y	0.45	11	13.5	11	16;11	y	0.27	7	18.5	7	20;17	y	0.58	9	6.5	9	7;6	y	0.59	12	8.5	12	7;10	y	0.56	17	13.5	17	15;12	y	0.32	6	13.0	6	10;16	y	0.38	11	18.0	11	17;19	y	0.43	5	6.5	5	5;8	y	0.29	6	15.0	6	19;11	y	ENSMUSG00000026490.19	Cdc42bpa	chr1	protein_coding	CDC42 binding protein kinase alpha
known_NIR_498	chr1	179994892	180009627	-	180006849	180009627	A3SS&ES	ENSMUST00000170472.8	known	0.00	0	211	0	211	n	0.00	0	117	0	117	n	0.00	0	38	0	38	n	0.00	0	245	0	245	n	0.00	0	402	0	402	n	0.00	0	58	0	58	n	0.00	0	414	0	414	n	0.00	0	101	0	101	n	0.00	0	328	0	328	n	0.00	0	400	0	400	n	0.01	2	284	2	284	y	0.00	0	362	0	362	n	ENSMUSG00000026489.14	Coq8a	chr1	protein_coding	coenzyme Q8A
known_NIR_499	chr1	179997279	179997908	-	179997279;179997767	179997627;179997908	ES	ENSMUST00000170472.8	known	0.00	0	272.5	0	245;300	n	0.00	0	147.5	0	134;161	n	0.00	0	51.0	0	46;56	n	0.00	0	242.5	0	224;261	n	0.00	0	387.5	0	345;430	n	0.00	0	54.5	0	43;66	n	0.00	2	441.0	2	399;483	y	0.00	0	86.5	0	84;89	n	0.00	0	375.5	0	350;401	n	0.00	0	437.0	0	410;464	n	0.00	0	351.0	0	325;377	n	0.00	0	372.5	0	366;379	n	ENSMUSG00000026489.14	Coq8a	chr1	protein_coding	coenzyme Q8A
known_NIR_500	chr1	179997279	179997908	-	179997767	179997908	3pMXE	ENSMUST00000162769.8	known	0.00	0	300	0	300	n	0.00	0	161	0	161	n	0.00	0	56	0	56	n	0.00	0	261	0	261	n	0.00	0	430	0	430	n	0.00	0	66	0	66	n	0.00	2	483	2	483	y	0.00	0	89	0	89	n	0.00	0	401	0	401	n	0.00	0	464	0	464	n	0.00	0	377	0	377	n	0.00	0	379	0	379	n	ENSMUSG00000026489.14	Coq8a	chr1	protein_coding	coenzyme Q8A
known_NIR_501	chr1	180001890	180006448	-	180001890	180006142	5pMXE	ENSMUST00000161300.7	known	0.01	1	189	1	189	n	0.00	0	107	0	107	n	0.00	0	29	0	29	n	0.00	0	211	0	211	n	0.01	2	272	2	272	y	0.02	1	48	1	48	n	0.00	0	404	0	404	n	0.03	2	69	2	69	y	0.01	4	271	4	271	y	0.01	2	344	2	344	y	0.00	1	278	1	278	n	0.01	4	292	4	292	y	ENSMUSG00000026489.14	Coq8a	chr1	protein_coding	coenzyme Q8A
known_NIR_502	chr1	180001890	180006448	-	180001890;180006208	180006142;180006448	ES	ENSMUST00000170472.8	known	0.01	1	193.0	1	189;197	n	0.00	0	102.0	0	107;97	n	0.00	0	28.0	0	29;27	n	0.00	0	194.5	0	211;178	n	0.01	2	277.5	2	272;283	y	0.02	1	50.0	1	48;52	n	0.00	0	365.0	0	404;326	n	0.03	2	74.5	2	69;80	y	0.02	4	259.0	4	271;247	y	0.01	2	334.0	2	344;324	y	0.00	1	259.5	1	278;241	n	0.01	4	293.0	4	292;294	y	ENSMUSG00000026489.14	Coq8a	chr1	protein_coding	coenzyme Q8A
known_NIR_503	chr1	180006849	180023438	-	180006849	180009627	5pMXE	ENSMUST00000161632.3	known	0.01	2	211	2	211	y	0.00	0	117	0	117	n	0.00	0	38	0	38	n	0.00	0	245	0	245	n	0.00	2	402	2	402	y	0.00	0	58	0	58	n	0.00	0	414	0	414	n	0.00	0	101	0	101	n	0.01	2	328	2	328	y	0.00	0	400	0	400	n	0.00	0	284	0	284	n	0.00	0	362	0	362	n	ENSMUSG00000026489.14	Coq8a	chr1	protein_coding	coenzyme Q8A
known_NIR_504	chr1	180006849	180023438	-	180006849;180009812	180009627;180023438	ES	ENSMUST00000027766.13	known	0.01	2	148.5	2	211;86	y	0.00	0	82.0	0	117;47	n	0.00	0	26.5	0	38;15	n	0.00	0	180.5	0	245;116	n	0.01	2	306.5	2	402;211	y	0.00	0	42.0	0	58;26	n	0.00	0	310.0	0	414;206	n	0.00	0	73.0	0	101;45	n	0.01	2	234.0	2	328;140	y	0.00	0	307.0	0	400;214	n	0.00	0	210.0	0	284;136	n	0.00	0	258.0	0	362;154	n	ENSMUSG00000026489.14	Coq8a	chr1	protein_coding	coenzyme Q8A
known_NIR_505	chr1	180006849	180023438	-	180009812	180023438	A3SS&ES	ENSMUST00000160879.7	known	0.02	2	86	2	86	y	0.00	0	47	0	47	n	0.00	0	15	0	15	n	0.00	0	116	0	116	n	0.01	2	211	2	211	y	0.00	0	26	0	26	n	0.00	0	206	0	206	n	0.00	0	45	0	45	n	0.01	2	140	2	140	y	0.00	0	214	0	214	n	0.00	0	136	0	136	n	0.00	0	154	0	154	n	ENSMUSG00000026489.14	Coq8a	chr1	protein_coding	coenzyme Q8A
known_NIR_506	chr1	180009812	180021168	-	180009812	180023438	A5SS	ENSMUST00000027766.13	known	0.01	1	86	1	86	n	0.00	0	47	0	47	n	0.00	0	15	0	15	n	0.00	0	116	0	116	n	0.00	0	211	0	211	n	0.00	0	26	0	26	n	0.00	0	206	0	206	n	0.00	0	45	0	45	n	0.01	2	140	2	140	y	0.00	0	214	0	214	n	0.00	0	136	0	136	n	0.00	0	154	0	154	n	ENSMUSG00000026489.14	Coq8a	chr1	protein_coding	coenzyme Q8A
known_NIR_507	chr1	180009812	180023438	-	180009812	180021001	5pMXE	ENSMUST00000170472.8	known	0.99	86	1	86	1	n	0.98	47	1	47	1	n	1.00	15	0	15	0	n	0.98	116	2	116	2	y	0.99	211	3	211	3	y	1.00	26	0	26	0	n	0.90	206	22	206	22	y	1.00	45	0	45	0	n	0.99	140	2	140	2	y	1.00	214	0	214	0	n	0.98	136	3	136	3	y	1.00	154	0	154	0	n	ENSMUSG00000026489.14	Coq8a	chr1	protein_coding	coenzyme Q8A
known_NIR_508	chr1	180056526	180056946	-	180056526	180056951	A5SS	ENSMUST00000130711.8	known	0.05	24	480	24	480	y	0.03	14	416	14	416	y	0.03	9	259	9	259	y	0.04	18	400	18	400	y	0.05	33	645	33	645	y	0.06	17	266	17	266	y	0.05	26	470	26	470	y	0.04	13	358	13	358	y	0.05	26	500	26	500	y	0.03	21	619	21	619	y	0.04	19	522	19	522	y	0.05	27	525	27	525	y	ENSMUSG00000010609.16	Psen2	chr1	protein_coding	presenilin 2
known_NIR_509	chr1	180057049	180057407	-	180057052	180057407	A3SS	ENSMUST00000130711.8	known	0.06	22	360	22	360	y	0.06	20	297	20	297	y	0.06	11	170	11	170	y	0.04	13	335	13	335	y	0.05	21	432	21	432	y	0.05	12	225	12	225	y	0.08	30	367	30	367	y	0.03	8	260	8	260	y	0.04	16	367	16	367	y	0.06	33	484	33	484	y	0.05	22	439	22	439	y	0.07	31	409	31	409	y	ENSMUSG00000010609.16	Psen2	chr1	protein_coding	presenilin 2
known_NIR_510	chr1	180057052	180057535	-	180057052	180057407	A5SS	ENSMUST00000130711.8	known	0.27	131	360	131	360	y	0.26	107	297	107	297	y	0.32	79	170	79	170	y	0.28	130	335	130	335	y	0.30	184	432	184	432	y	0.25	77	225	77	225	y	0.29	152	367	152	367	y	0.32	125	260	125	260	y	0.29	147	367	147	367	y	0.26	166	484	166	484	y	0.26	151	439	151	439	y	0.22	115	409	115	409	y	ENSMUSG00000010609.16	Psen2	chr1	protein_coding	presenilin 2
known_NIR_511	chr1	180073322	180073429	-	180073322	180083788	A5SS	ENSMUST00000111108.10	known	0.48	16	17	16	17	y	0.48	15	16	15	16	y	0.34	10	19	10	19	y	0.44	23	29	23	29	y	0.56	35	27	35	27	y	0.68	32	15	32	15	y	0.52	23	21	23	21	y	0.76	25	8	25	8	y	0.58	19	14	19	14	y	0.42	16	22	16	22	y	0.64	14	8	14	8	y	0.63	29	17	29	17	y	ENSMUSG00000010609.16	Psen2	chr1	protein_coding	presenilin 2
known_NIR_512	chr1	180396938	180401217	+	180396718	180401217	A5SS	ENSMUST00000194608.2	known	0.00	0	29	0	29	n	0.00	0	10	0	10	n	0.00	0	22	0	22	n	0.12	3	22	3	22	y	0.03	1	28	1	28	n	0.00	0	17	0	17	n	0.09	2	21	2	21	y	0.10	3	27	3	27	y	0.00	0	26	0	26	n	0.03	1	38	1	38	n	0.00	0	26	0	26	n	0.00	0	33	0	33	n	ENSMUSG00000026496.12	Parp1	chr1	protein_coding	poly (ADP-ribose) polymerase family, member 1
known_NIR_513	chr1	180630767	180637682	-	180630770	180637682	A3SS	ENSMUST00000161308.8	known	0.00	0	843	0	843	n	0.04	34	825	34	825	y	0.05	41	799	41	799	y	0.04	32	824	32	824	y	0.05	57	1098	57	1098	y	0.00	0	456	0	456	n	0.05	53	1072	53	1072	y	0.05	24	506	24	506	y	0.00	0	701	0	701	n	0.06	71	1133	71	1133	y	0.00	0	852	0	852	n	0.00	0	992	0	992	n	ENSMUSG00000060743.13	H3f3a	chr1	protein_coding	H3.3 histone A
known_NIR_514	chr1	180770124	180774131	+	180770075	180774131	A5SS	ENSMUST00000161847.8	known	0.71	5	2	5	2	n	1.00	4	0	4	0	n	1.00	5	0	5	0	n	1.00	11	0	11	0	n	0.83	10	2	10	2	y	1.00	1	0	1	0	n	0.89	8	1	8	1	n	0.50	1	1	1	1	n	1.00	6	0	6	0	n	1.00	8	0	8	0	n	0.67	4	2	4	2	n	0.91	10	1	10	1	n	ENSMUSG00000026519.17	Tmem63a	chr1	protein_coding	transmembrane protein 63a
known_NIR_515	chr1	180818083	180819498	-	180803846	180819498	A3SS	ENSMUST00000154133.8	known	1.00	764	0	764	0	n	1.00	730	3	730	3	y	1.00	244	0	244	0	n	1.00	780	3	780	3	y	1.00	798	1	798	1	n	0.99	103	1	103	1	n	1.00	1060	2	1060	2	y	0.98	129	2	129	2	y	1.00	952	1	952	1	n	1.00	1539	4	1539	4	y	1.00	1184	0	1184	0	n	1.00	1000	2	1000	2	y	ENSMUSG00000038776.14	Ephx1	chr1	protein_coding	epoxide hydrolase 1, microsomal
known_NIR_516	chr1	180821610	180822193	-	180821652	180822193	A3SS	ENSMUST00000154133.8	known	0.01	8	621	8	621	y	0.01	5	558	5	558	y	0.02	3	193	3	193	y	0.02	12	740	12	740	y	0.00	3	707	3	707	y	0.01	1	92	1	92	n	0.01	10	881	10	881	y	0.02	2	122	2	122	y	0.01	8	841	8	841	y	0.01	13	1297	13	1297	y	0.01	8	1074	8	1074	y	0.01	7	937	7	937	y	ENSMUSG00000038776.14	Ephx1	chr1	protein_coding	epoxide hydrolase 1, microsomal
known_NIR_517	chr1	180829551	180848333	-	180829551	180844992	5pMXE	ENSMUST00000036928.12	known	0.01	3	498	3	498	y	0.00	2	411	2	411	y	0.00	0	138	0	138	n	0.00	3	709	3	709	y	0.00	3	631	3	631	y	0.01	1	88	1	88	n	0.01	4	675	4	675	y	0.00	0	98	0	98	n	0.01	4	682	4	682	y	0.01	11	1103	11	1103	y	0.01	6	790	6	790	y	0.00	3	811	3	811	y	ENSMUSG00000038776.14	Ephx1	chr1	protein_coding	epoxide hydrolase 1, microsomal
known_NIR_518	chr1	180981368	180983424	+	180972466	180983424	A5SS	ENSMUST00000193907.6	known	0.97	37	1	37	1	n	1.00	28	0	28	0	n	1.00	57	0	57	0	n	0.97	31	1	31	1	n	0.98	60	1	60	1	n	0.95	35	2	35	2	y	0.94	50	3	50	3	y	1.00	30	0	30	0	n	1.00	33	0	33	0	n	1.00	60	0	60	0	n	0.98	40	1	40	1	n	0.93	55	4	55	4	y	ENSMUSG00000062169.14	Cnih4	chr1	protein_coding	cornichon family AMPA receptor auxiliary protein 4
known_NIR_519	chr1	181005396	181008869	-	181008213	181008869	3pMXE	ENSMUST00000159290.2	known	0.82	67	15	67	15	y	0.68	49	23	49	23	y	0.83	176	35	176	35	y	0.87	78	12	78	12	y	0.89	134	17	134	17	y	0.89	74	9	74	9	y	0.84	141	26	141	26	y	0.72	59	23	59	23	y	0.76	72	23	72	23	y	0.87	134	20	134	20	y	0.78	63	18	63	18	y	0.84	114	22	114	22	y	ENSMUSG00000038733.15	Wdr26	chr1	protein_coding	WD repeat domain 26
known_NIR_520	chr1	181005396;181008213	181008031;181008869	-	181005396	181008869	cassetteExon	ENSMUST00000162819.9	known	0.11	8.5	67	2;15	67	y	0.19	11.5	49	0;23	49	n	0.09	18.0	176	1;35	176	n	0.09	7.5	78	3;12	78	y	0.08	11.0	134	5;17	134	y	0.06	4.5	74	0;9	74	n	0.08	13.0	141	0;26	141	n	0.17	12.0	59	1;23	59	n	0.15	12.5	72	2;23	72	y	0.07	10.0	134	0;20	134	n	0.13	9.5	63	1;18	63	n	0.09	11.5	114	1;22	114	n	ENSMUSG00000038733.15	Wdr26	chr1	protein_coding	WD repeat domain 26
known_NIR_521	chr1	181010131	181010334	-	181009054	181010334	A3SS	ENSMUST00000162819.9	known	0.00	0	116	0	116	n	0.00	0	86	0	86	n	0.02	4	218	4	218	y	0.01	1	97	1	97	n	0.00	0	184	0	184	n	0.00	0	109	0	109	n	0.00	0	120	0	120	n	0.02	2	91	2	91	y	0.00	0	88	0	88	n	0.00	0	157	0	157	n	0.04	3	81	3	81	y	0.00	0	148	0	148	n	ENSMUSG00000038733.15	Wdr26	chr1	protein_coding	WD repeat domain 26
known_NIR_522	chr1	181030725	181036616	-	181030725	181036568	A5SS	ENSMUST00000162819.9	known	0.76	48	15	48	15	y	0.65	22	12	22	12	y	0.54	76	65	76	65	y	0.51	49	48	49	48	y	0.69	69	31	69	31	y	0.62	45	28	45	28	y	0.64	45	25	45	25	y	0.65	42	23	42	23	y	0.48	27	29	27	29	y	0.57	41	31	41	31	y	0.76	35	11	35	11	y	0.55	46	38	46	38	y	ENSMUSG00000038733.15	Wdr26	chr1	protein_coding	WD repeat domain 26
known_NIR_523	chr1	181030789	181036616	-	181030725	181036616	A3SS	ENSMUST00000162963.8	known	0.00	0	48	0	48	n	0.00	0	22	0	22	n	0.00	0	76	0	76	n	0.04	2	49	2	49	y	0.03	2	69	2	69	y	0.00	0	45	0	45	n	0.13	7	45	7	45	y	0.02	1	42	1	42	n	0.00	0	27	0	27	n	0.07	3	41	3	41	y	0.00	0	35	0	35	n	0.00	0	46	0	46	n	ENSMUSG00000038733.15	Wdr26	chr1	protein_coding	WD repeat domain 26
known_NIR_524	chr1	181666121	181669853	-	181666121	181667265	A5SS&ES	ENSMUST00000195299.6	known	0.75	3	1	3	1	n	-	-	-	-	-	-	0.82	9	2	9	2	y	1.00	12	0	12	0	n	0.75	9	3	9	3	y	1.00	9	0	9	0	n	1.00	12	0	12	0	n	0.90	9	1	9	1	n	-	-	-	-	-	-	0.89	8	1	8	1	n	1.00	4	0	4	0	n	0.91	10	1	10	1	n	ENSMUSG00000004880.12	Lbr	chr1	protein_coding	lamin B receptor
known_NIR_525	chr1	181666121;181667367	181667265;181669853	-	181666121	181669853	cassetteExon	ENSMUST00000005003.12	known	0.14	0.5	3	1;0	3	n	-	-	-	-	-	-	0.10	1.0	9	2;0	9	n	0.00	0.0	12	0;0	12	n	0.25	3.0	9	3;3	9	y	0.00	0.0	9	0;0	9	n	0.00	0.0	12	0;0	12	n	0.05	0.5	9	1;0	9	n	1.00	1.0	0	0;2	0	n	0.06	0.5	8	1;0	8	n	0.00	0.0	4	0;0	4	n	0.05	0.5	10	1;0	10	n	ENSMUSG00000004880.12	Lbr	chr1	protein_coding	lamin B receptor
known_NIR_526	chr1	181952540;181956317	181956249;181958901	+	181952540	181958901	cassetteExon	ENSMUST00000111018.2	known	0.96	565.0	21	471;659	21	y	0.97	595.5	16	511;680	16	y	0.96	926.0	35	797;1055	35	y	0.99	537.5	7	456;619	7	y	0.97	833.5	26	760;907	26	y	0.96	569.5	22	480;659	22	y	0.97	832.0	23	684;980	23	y	0.96	528.0	20	466;590	20	y	0.97	483.5	17	414;553	17	y	0.98	790.5	17	674;907	17	y	0.97	712.5	25	587;838	25	y	0.97	715.5	19	618;813	19	y	ENSMUSG00000026511.8	Srp9	chr1	protein_coding	signal recognition particle 9
known_NIR_527	chr1	182107283	182109726	-	182107283	182110187	A5SS	ENSMUST00000035295.6	known	0.00	0	152	0	152	n	0.01	1	88	1	88	n	0.01	1	117	1	117	n	0.00	0	177	0	177	n	0.00	0	212	0	212	n	0.00	0	86	0	86	n	0.01	1	190	1	190	n	0.00	0	93	0	93	n	0.00	0	125	0	125	n	0.00	0	225	0	225	n	0.00	0	132	0	132	n	0.01	2	229	2	229	y	ENSMUSG00000038633.6	Degs1	chr1	protein_coding	delta(4)-desaturase, sphingolipid 1
known_NIR_528	chr1	182272374	182273887	+	182272374	182273839	A3SS	ENSMUST00000117245.2	known	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.00	0	18	0	18	n	0.00	0	18	0	18	n	0.23	5	17	5	17	y	0.33	3	6	3	6	n	0.00	0	29	0	29	n	0.06	1	15	1	15	n	0.00	0	15	0	15	n	0.00	0	16	0	16	n	0.00	0	20	0	20	n	0.00	0	11	0	11	n	ENSMUSG00000026510.11	Trp53bp2	chr1	protein_coding	transformation related protein 53 binding protein 2
known_NIR_529	chr1	182432165	182435159	+	182432165	182432798	3pMXE	ENSMUST00000168514.7	known	0.26	8	23	8	23	y	0.33	3	6	3	6	n	0.38	18	30	18	30	y	0.45	5	6	5	6	y	0.39	22	34	22	34	y	0.60	34	23	34	23	y	0.48	16	17	16	17	y	0.60	26	17	26	17	y	0.60	9	6	9	6	y	0.50	7	7	7	7	y	0.59	10	7	10	7	y	0.00	0	3	0	3	n	ENSMUSG00000038599.15	Capn8	chr1	protein_coding	calpain 8
known_NIR_530	chr1	182591961	182592571	+	182591678	182592571	A5SS	ENSMUST00000155229.7	known	0.91	21	2	21	2	y	1.00	10	0	10	0	n	0.67	2	1	2	1	n	1.00	24	0	24	0	n	1.00	30	0	30	0	n	1.00	6	0	6	0	n	1.00	21	0	21	0	n	1.00	8	0	8	0	n	1.00	18	0	18	0	n	1.00	15	0	15	0	n	1.00	25	0	25	0	n	1.00	10	0	10	0	n	ENSMUSG00000038576.16	Susd4	chr1	protein_coding	sushi domain containing 4
known_NIR_531	chr1	182782447;182785634	182785511;182796579	+	182782447	182796579	cassetteExon	ENSMUST00000193687.7	known	0.33	0.5	1	0;1	1	n	1.00	2.0	0	3;1	0	n	0.50	2.0	2	2;2	2	n	1.00	2.5	0	0;5	0	n	0.83	5.0	1	4;6	1	n	0.20	0.5	2	0;1	2	n	0.33	1.0	2	1;1	2	n	1.00	2.0	0	1;3	0	n	0.62	5.0	3	4;6	3	y	0.57	4.0	3	1;7	3	n	0.50	1.0	1	2;0	1	n	1.00	1.5	0	1;2	0	n	ENSMUSG00000079164.11	Tlr5	chr1	protein_coding	toll-like receptor 5
known_NIR_532	chr1	183064119	183065697	-	183064135	183065697	A3SS	ENSMUST00000057062.12	known	0.00	0	23	0	23	n	0.05	1	21	1	21	n	0.04	3	65	3	65	y	0.00	0	32	0	32	n	0.03	1	38	1	38	n	0.00	0	26	0	26	n	0.07	2	28	2	28	y	0.00	0	23	0	23	n	0.00	0	23	0	23	n	0.06	2	32	2	32	y	0.16	4	21	4	21	y	0.05	2	40	2	40	y	ENSMUSG00000046836.14	Brox	chr1	protein_coding	BRO1 domain and CAAX motif containing
known_NIR_533	chr1	183072738	183073471	-	183069400	183073471	A3SS	ENSMUST00000057062.12	known	0.00	0	27	0	27	n	0.00	0	16	0	16	n	0.00	0	68	0	68	n	0.05	2	41	2	41	y	0.00	0	52	0	52	n	0.00	0	28	0	28	n	0.00	0	39	0	39	n	0.00	0	27	0	27	n	0.00	0	27	0	27	n	0.00	0	40	0	40	n	0.09	2	21	2	21	y	0.00	0	38	0	38	n	ENSMUSG00000046836.14	Brox	chr1	protein_coding	BRO1 domain and CAAX motif containing
known_NIR_534	chr1	183074189	183075898	-	183074145	183075898	A3SS	ENSMUST00000057062.12	known	0.00	0	26	0	26	n	0.00	0	8	0	8	n	0.08	2	24	2	24	y	0.00	0	12	0	12	n	0.00	0	23	0	23	n	0.00	0	9	0	9	n	0.06	1	16	1	16	n	0.00	0	19	0	19	n	0.00	0	15	0	15	n	0.00	0	22	0	22	n	0.00	0	10	0	10	n	0.00	0	29	0	29	n	ENSMUSG00000046836.14	Brox	chr1	protein_coding	BRO1 domain and CAAX motif containing
known_NIR_535	chr1	183076428	183078726	-	183076428	183078447	5pMXE	ENSMUST00000057062.12	known	0.07	2	26	2	26	y	0.11	1	8	1	8	n	0.11	4	33	4	33	y	0.16	6	32	6	32	y	0.19	8	34	8	34	y	0.24	4	13	4	13	y	0.21	5	19	5	19	y	0.05	1	18	1	18	n	0.23	3	10	3	10	y	0.25	8	24	8	24	y	0.23	3	10	3	10	y	0.11	4	31	4	31	y	ENSMUSG00000046836.14	Brox	chr1	protein_coding	BRO1 domain and CAAX motif containing
known_NIR_536	chr1	183125806	183126629	-	183125806	183132407	A5SS	ENSMUST00000194543.4	known	0.08	12	147	12	147	y	0.06	5	82	5	82	y	0.16	33	171	33	171	y	0.07	13	175	13	175	y	0.06	15	221	15	221	y	0.16	19	102	19	102	y	0.07	15	192	15	192	y	0.06	8	125	8	125	y	0.06	8	128	8	128	y	0.05	10	209	10	209	y	0.04	6	130	6	130	y	0.06	11	181	11	181	y	ENSMUSG00000056050.16	Mia3	chr1	protein_coding	melanoma inhibitory activity 3
known_NIR_537	chr1	184539385	184540977	-	184539385	184543043	A5SS	ENSMUST00000048462.13	known	0.00	0	875	0	875	n	0.00	1	731	1	731	n	0.00	0	572	0	572	n	0.00	0	1139	0	1139	n	0.00	0	1179	0	1179	n	0.00	0	502	0	502	n	0.00	1	996	1	996	n	0.00	0	570	0	570	n	0.00	0	767	0	767	n	0.00	0	1339	0	1339	n	0.00	0	994	0	994	n	0.00	2	1263	2	1263	y	ENSMUSG00000026621.14	Mtarc1	chr1	protein_coding	mitochondrial amidoxime reducing component 1
known_NIR_538	chr1	184554603	184564773	-	184554603	184554686	5pMXE	ENSMUST00000161341.8	known	0.00	0	1501	0	1501	n	0.00	0	1605	0	1605	n	0.00	0	789	0	789	n	0.00	0	1568	0	1568	n	0.00	2	1661	2	1661	y	0.00	0	566	0	566	n	0.00	0	1829	0	1829	n	0.00	0	725	0	725	n	0.00	2	1482	2	1482	y	0.00	4	2050	4	2050	y	0.00	3	1760	3	1760	y	0.00	4	1853	4	1853	y	ENSMUSG00000073481.10	Mtarc2	chr1	protein_coding	mitochondrial amidoxime reducing component 2
known_NIR_539	chr1	184554603	184564773	-	184554603;184554747	184554686;184564773	ES	ENSMUST00000068725.10	known	0.00	0	1435.0	0	1501;1369	n	0.00	0	1523.0	0	1605;1441	n	0.00	0	735.5	0	789;682	n	0.00	0	1512.5	0	1568;1457	n	0.00	2	1605.5	2	1661;1550	y	0.00	0	538.0	0	566;510	n	0.00	0	1795.5	0	1829;1762	n	0.00	0	720.0	0	725;715	n	0.00	2	1438.0	2	1482;1394	y	0.00	4	1984.0	4	2050;1918	y	0.00	3	1653.5	3	1760;1547	y	0.00	4	1761.5	4	1853;1670	y	ENSMUSG00000073481.10	Mtarc2	chr1	protein_coding	mitochondrial amidoxime reducing component 2
known_NIR_540	chr1	184554747	184559305	-	184554747	184559595	A5SS	ENSMUST00000161359.8	known	1.00	9	0	9	0	n	0.85	11	2	11	2	y	0.00	0	1	0	1	n	0.88	15	2	15	2	y	1.00	8	0	8	0	n	0.88	7	1	7	1	n	0.82	9	2	9	2	y	1.00	10	0	10	0	n	0.63	12	7	12	7	y	0.89	25	3	25	3	y	0.86	12	2	12	2	y	1.00	20	0	20	0	n	ENSMUSG00000073481.10	Mtarc2	chr1	protein_coding	mitochondrial amidoxime reducing component 2
known_NIR_541	chr1	184554747	184559305	-	184554747	184564773	A5SS	ENSMUST00000068725.10	known	0.01	9	1369	9	1369	y	0.01	11	1441	11	1441	y	0.00	0	682	0	682	n	0.01	15	1457	15	1457	y	0.01	8	1550	8	1550	y	0.01	7	510	7	510	y	0.01	9	1762	9	1762	y	0.01	10	715	10	715	y	0.01	12	1394	12	1394	y	0.01	25	1918	25	1918	y	0.01	12	1547	12	1547	y	0.01	20	1670	20	1670	y	ENSMUSG00000073481.10	Mtarc2	chr1	protein_coding	mitochondrial amidoxime reducing component 2
known_NIR_542	chr1	184554747	184559385	-	184554747	184559305	A5SS	ENSMUST00000162261.8	known	0.44	7	9	7	9	y	0.45	9	11	9	11	y	1.00	7	0	7	0	n	0.25	5	15	5	15	y	0.56	10	8	10	8	y	0.30	3	7	3	7	y	0.44	7	9	7	9	y	0.23	3	10	3	10	y	0.45	10	12	10	12	y	0.36	14	25	14	25	y	0.40	8	12	8	12	y	0.39	13	20	13	20	y	ENSMUSG00000073481.10	Mtarc2	chr1	protein_coding	mitochondrial amidoxime reducing component 2
known_NIR_543	chr1	184554747	184559385	-	184554747	184559595	A5SS	ENSMUST00000161359.8	known	1.00	7	0	7	0	n	0.82	9	2	9	2	y	0.88	7	1	7	1	n	0.71	5	2	5	2	n	1.00	10	0	10	0	n	0.75	3	1	3	1	n	0.78	7	2	7	2	n	1.00	3	0	3	0	n	0.59	10	7	10	7	y	0.82	14	3	14	3	y	0.80	8	2	8	2	y	1.00	13	0	13	0	n	ENSMUSG00000073481.10	Mtarc2	chr1	protein_coding	mitochondrial amidoxime reducing component 2
known_NIR_544	chr1	184554747	184559385	-	184554747	184564773	A5SS	ENSMUST00000068725.10	known	0.01	7	1369	7	1369	y	0.01	9	1441	9	1441	y	0.01	7	682	7	682	y	0.00	5	1457	5	1457	y	0.01	10	1550	10	1550	y	0.01	3	510	3	510	y	0.00	7	1762	7	1762	y	0.00	3	715	3	715	y	0.01	10	1394	10	1394	y	0.01	14	1918	14	1918	y	0.01	8	1547	8	1547	y	0.01	13	1670	13	1670	y	ENSMUSG00000073481.10	Mtarc2	chr1	protein_coding	mitochondrial amidoxime reducing component 2
known_NIR_545	chr1	184554747	184559595	-	184554747	184564773	A5SS	ENSMUST00000068725.10	known	0.00	0	1369	0	1369	n	0.00	2	1441	2	1441	y	0.00	1	682	1	682	n	0.00	2	1457	2	1457	y	0.00	0	1550	0	1550	n	0.00	1	510	1	510	n	0.00	2	1762	2	1762	y	0.00	0	715	0	715	n	0.00	7	1394	7	1394	y	0.00	3	1918	3	1918	y	0.00	2	1547	2	1547	y	0.00	0	1670	0	1670	n	ENSMUSG00000073481.10	Mtarc2	chr1	protein_coding	mitochondrial amidoxime reducing component 2
known_NIR_546	chr1	184566225	184577743	-	184566225	184573451	A5SS&ES	ENSMUST00000161821.4	known	0.00	2	1251	2	1251	y	0.00	0	1057	0	1057	n	0.00	1	632	1	632	n	0.00	0	1344	0	1344	n	0.00	0	1438	0	1438	n	0.00	0	454	0	454	n	0.00	1	1383	1	1383	n	0.00	0	582	0	582	n	0.00	0	1165	0	1165	n	0.00	0	1696	0	1696	n	0.00	2	1333	2	1333	y	0.00	0	1598	0	1598	n	ENSMUSG00000073481.10	Mtarc2	chr1	protein_coding	mitochondrial amidoxime reducing component 2
known_NIR_547	chr1	184566225	184577743	-	184566225;184573624	184573451;184577743	ES	ENSMUST00000068725.10	known	0.00	2	1142.0	2	1251;1033	y	0.00	0	988.5	0	1057;920	n	0.00	1	606.0	1	632;580	n	0.00	0	1301.0	0	1344;1258	n	0.00	0	1371.5	0	1438;1305	n	0.00	0	460.0	0	454;466	n	0.00	1	1238.5	1	1383;1094	n	0.00	0	581.0	0	582;580	n	0.00	0	1066.0	0	1165;967	n	0.00	0	1616.0	0	1696;1536	n	0.00	2	1265.0	2	1333;1197	y	0.00	0	1498.0	0	1598;1398	n	ENSMUSG00000073481.10	Mtarc2	chr1	protein_coding	mitochondrial amidoxime reducing component 2
known_NIR_548	chr1	184573624	184578540	-	184573624	184577743	5pMXE	ENSMUST00000068725.10	known	0.02	22	1033	22	1033	y	0.02	17	920	17	920	y	0.01	4	580	4	580	y	0.01	18	1258	18	1258	y	0.01	19	1305	19	1305	y	0.00	2	466	2	466	y	0.01	15	1094	15	1094	y	0.01	4	580	4	580	y	0.01	11	967	11	967	y	0.01	23	1536	23	1536	y	0.01	13	1197	13	1197	y	0.01	16	1398	16	1398	y	ENSMUSG00000073481.10	Mtarc2	chr1	protein_coding	mitochondrial amidoxime reducing component 2
known_NIR_549	chr1	184999271	184999370	+	184999211	184999370	A5SS	ENSMUST00000194740.6	known	0.48	13	14	13	14	y	0.81	13	3	13	3	y	0.61	25	16	25	16	y	0.60	15	10	15	10	y	0.74	37	13	37	13	y	0.42	13	18	13	18	y	0.78	25	7	25	7	y	0.35	6	11	6	11	y	0.67	10	5	10	5	y	0.53	17	15	17	15	y	0.67	12	6	12	6	y	0.68	19	9	19	9	y	ENSMUSG00000039318.13	Rab3gap2	chr1	protein_coding	RAB3 GTPase activating protein subunit 2
known_NIR_550	chr1	185044724	185048091	-	185035598	185048091	A3SS	ENSMUST00000027921.11	known	0.00	0	56	0	56	n	0.02	1	64	1	64	n	0.01	1	139	1	139	n	0.03	3	91	3	91	y	0.07	7	90	7	90	y	0.02	2	83	2	83	y	0.00	0	98	0	98	n	0.00	0	69	0	69	n	0.05	4	73	4	73	y	0.00	0	128	0	128	n	0.02	2	92	2	92	y	0.02	2	114	2	114	y	ENSMUSG00000026618.12	Iars2	chr1	protein_coding	isoleucine-tRNA synthetase 2, mitochondrial
known_NIR_551	chr1	185064460	185073420	+	185064460;185070429	185070303;185073420	ES	ENSMUST00000027916.13	known	0.05	5	102.0	5	83;121	y	0.08	8	88.5	8	76;101	y	0.05	6	108.5	6	84;133	y	0.08	12	146.5	12	136;157	y	0.07	11	154.0	11	148;160	y	0.03	2	66.5	2	54;79	y	0.10	13	121.0	13	109;133	y	0.04	3	75.5	3	56;95	y	0.06	5	85.0	5	68;102	y	0.04	6	160.0	6	132;188	y	0.07	9	124.0	9	115;133	y	0.06	8	135.5	8	103;168	y	ENSMUSG00000026617.17	Bpnt1	chr1	protein_coding	3'(2'), 5'-bisphosphate nucleotidase 1
known_NIR_552	chr1	185064460	185073420	+	185070429	185073420	A5SS&ES	ENSMUST00000151769.2	known	0.04	5	121	5	121	y	0.07	8	101	8	101	y	0.04	6	133	6	133	y	0.07	12	157	12	157	y	0.06	11	160	11	160	y	0.02	2	79	2	79	y	0.09	13	133	13	133	y	0.03	3	95	3	95	y	0.05	5	102	5	102	y	0.03	6	188	6	188	y	0.06	9	133	9	133	y	0.05	8	168	8	168	y	ENSMUSG00000026617.17	Bpnt1	chr1	protein_coding	3'(2'), 5'-bisphosphate nucleotidase 1
known_NIR_553	chr1	185064518	185070303	+	185064460	185070303	A5SS	ENSMUST00000027916.13	known	0.03	3	83	3	83	y	0.04	3	76	3	76	y	0.03	3	84	3	84	y	0.02	3	136	3	136	y	0.02	3	148	3	148	y	0.02	1	54	1	54	n	0.07	8	109	8	109	y	0.07	4	56	4	56	y	0.07	5	68	5	68	y	0.05	7	132	7	132	y	0.04	5	115	5	115	y	0.06	7	103	7	103	y	ENSMUSG00000026617.17	Bpnt1	chr1	protein_coding	3'(2'), 5'-bisphosphate nucleotidase 1
known_NIR_554	chr1	185077624	185078872	+	185077619	185078872	A5SS	ENSMUST00000027916.13	known	0.03	3	114	3	114	y	0.05	5	102	5	102	y	0.02	3	118	3	118	y	0.01	1	165	1	165	n	0.01	2	166	2	166	y	0.04	2	53	2	53	y	0.02	3	145	3	145	y	0.00	0	101	0	101	n	0.02	2	93	2	93	y	0.01	2	172	2	172	y	0.02	2	115	2	115	y	0.01	1	173	1	173	n	ENSMUSG00000026617.17	Bpnt1	chr1	protein_coding	3'(2'), 5'-bisphosphate nucleotidase 1
known_NIR_555	chr1	185081032;185082078	185082034;185084379	+	185081032	185084379	cassetteExon	ENSMUST00000027916.13	known	0.04	6.0	156	5;7	156	y	0.04	5.0	124	5;5	124	y	0.09	11.5	110	10;13	110	y	0.02	4.5	177	3;6	177	y	0.09	17.0	165	15;19	165	y	0.14	9.5	60	11;8	60	y	0.08	14.5	171	14;15	171	y	0.07	6.5	88	7;6	88	y	0.04	5.5	124	6;5	124	y	0.04	7.5	160	8;7	160	y	0.07	9.0	129	10;8	129	y	0.04	6.0	145	7;5	145	y	ENSMUSG00000026617.17	Bpnt1	chr1	protein_coding	3'(2'), 5'-bisphosphate nucleotidase 1
known_NIR_556	chr1	185106409	185111742	+	185106409	185110972	3pMXE	ENSMUST00000195824.2	known	0.04	3	69	3	69	y	0.00	0	29	0	29	n	0.01	1	112	1	112	n	0.02	2	99	2	99	y	0.02	2	129	2	129	y	0.03	2	58	2	58	y	0.03	3	92	3	92	y	0.00	0	80	0	80	n	0.00	0	69	0	69	n	0.01	1	99	1	99	n	0.02	1	50	1	50	n	0.01	1	123	1	123	n	ENSMUSG00000026615.15	Eprs	chr1	protein_coding	glutamyl-prolyl-tRNA synthetase
known_NIR_557	chr1	185106409	185111742	+	185106409;185111098	185110972;185111742	ES	ENSMUST00000192284.6	known	0.05	3	62.0	3	69;55	y	0.00	0	35.0	0	29;41	n	0.01	1	119.0	1	112;126	n	0.02	2	84.0	2	99;69	y	0.02	2	112.5	2	129;96	y	0.04	2	49.5	2	58;41	y	0.03	3	91.0	3	92;90	y	0.00	0	69.5	0	80;59	n	0.00	0	58.5	0	69;48	n	0.01	1	90.0	1	99;81	n	0.02	1	46.5	1	50;43	n	0.01	1	109.5	1	123;96	n	ENSMUSG00000026615.15	Eprs	chr1	protein_coding	glutamyl-prolyl-tRNA synthetase
known_NIR_558	chr1	185187876	185188511	+	185187876	185188549	A3SS	ENSMUST00000061093.7	known	0.07	2	26	2	26	y	0.28	5	13	5	13	y	0.12	8	57	8	57	y	0.00	0	29	0	29	n	0.06	3	46	3	46	y	0.29	9	22	9	22	y	0.08	4	46	4	46	y	0.10	3	27	3	27	y	0.06	2	33	2	33	y	0.03	1	32	1	32	n	0.12	4	29	4	29	y	0.00	0	29	0	29	n	ENSMUSG00000026614.8	Slc30a10	chr1	protein_coding	solute carrier family 30, member 10
known_NIR_559	chr1	185821756	185846461	-	185821756;185832559	185832390;185846461	ES	ENSMUST00000045388.8	known	0.09	3	30.5	3	38;23	y	0.08	3	36.0	3	37;35	y	0.00	0	24.5	0	25;24	n	0.09	3	32.0	3	35;29	y	0.02	1	49.5	1	61;38	n	0.03	1	29.5	1	32;27	n	0.08	4	45.5	4	61;30	y	0.00	0	31.5	0	34;29	n	0.04	2	44.0	2	51;37	y	0.21	12	46.5	12	58;35	y	0.19	8	35.0	8	39;31	y	0.18	9	40.0	9	56;24	y	ENSMUSG00000039246.9	Lyplal1	chr1	protein_coding	lysophospholipase-like 1
known_NIR_560	chr1	186958416;186961857	186961796;186962981	+	186958416	186962981	cassetteExon	ENSMUST00000097443.10	known	0.00	0.0	20	0;0	20	n	0.00	0.0	15	0;0	15	n	0.06	2.5	37	2;3	37	y	0.00	0.0	27	0;0	27	n	0.02	0.5	25	1;0	25	n	0.02	0.5	24	0;1	24	n	0.00	0.0	34	0;0	34	n	0.17	2.0	10	0;4	10	n	0.00	0.0	18	0;0	18	n	0.10	3.0	28	4;2	28	y	0.00	0.0	19	0;0	19	n	0.00	0.0	32	0;0	32	n	ENSMUSG00000039210.17	Gpatch2	chr1	protein_coding	G patch domain containing 2
known_NIR_561	chr1	186966023	186966151	+	186966023	186966829	A3SS	ENSMUST00000097443.10	known	0.40	2	3	2	3	n	0.00	0	4	0	4	n	0.67	2	1	2	1	n	0.75	3	1	3	1	n	0.50	5	5	5	5	y	0.00	0	2	0	2	n	0.67	6	3	6	3	n	0.67	2	1	2	1	n	0.33	1	2	1	2	n	0.71	5	2	5	2	n	1.00	3	0	3	0	n	0.29	2	5	2	5	n	ENSMUSG00000039210.17	Gpatch2	chr1	protein_coding	G patch domain containing 2
known_NIR_562	chr1	186966023	186966151	+	186966023	187036527	A3SS	ENSMUST00000160481.8	known	0.25	2	6	2	6	n	0.00	0	8	0	8	n	0.11	2	17	2	17	y	0.30	3	7	3	7	y	0.31	5	11	5	11	y	0.00	0	7	0	7	n	0.50	6	6	6	6	y	0.25	2	6	2	6	n	0.20	1	4	1	4	n	0.23	5	17	5	17	y	0.38	3	5	3	5	n	0.12	2	15	2	15	y	ENSMUSG00000039210.17	Gpatch2	chr1	protein_coding	G patch domain containing 2
known_NIR_563	chr1	186966023	187036527	+	186966023	186966829	3pMXE	ENSMUST00000097443.10	known	0.67	6	3	6	3	n	0.67	8	4	8	4	y	0.94	17	1	17	1	n	0.88	7	1	7	1	n	0.69	11	5	11	5	y	0.78	7	2	7	2	n	0.67	6	3	6	3	n	0.86	6	1	6	1	n	0.67	4	2	4	2	n	0.89	17	2	17	2	y	1.00	5	0	5	0	n	0.75	15	5	15	5	y	ENSMUSG00000039210.17	Gpatch2	chr1	protein_coding	G patch domain containing 2
known_NIR_564	chr1	188706395	188706484	-	188706401	188706484	A3SS	ENSMUST00000193143.6	known	0.00	0	19	0	19	n	0.00	0	11	0	11	n	0.11	3	25	3	25	y	0.09	2	20	2	20	y	0.00	0	24	0	24	n	0.00	0	20	0	20	n	0.12	2	15	2	15	y	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.08	2	23	2	23	y	0.00	0	15	0	15	n	0.16	3	16	3	16	y	ENSMUSG00000026608.14	Kctd3	chr1	protein_coding	potassium channel tetramerisation domain containing 3
known_NIR_565	chr1	188706668	188708808	-	188706668	188708568	A5SS	ENSMUST00000193143.6	known	1.00	14	0	14	0	n	0.88	14	2	14	2	y	0.94	34	2	34	2	y	1.00	17	0	17	0	n	0.92	34	3	34	3	y	0.92	23	2	23	2	y	1.00	23	0	23	0	n	1.00	10	0	10	0	n	1.00	16	0	16	0	n	1.00	27	0	27	0	n	1.00	20	0	20	0	n	0.94	16	1	16	1	n	ENSMUSG00000026608.14	Kctd3	chr1	protein_coding	potassium channel tetramerisation domain containing 3
known_NIR_566	chr1	189629680	189630550	-	189629680	189632015	A5SS	ENSMUST00000027897.8	known	0.00	0	60	0	60	n	0.03	2	58	2	58	y	0.01	1	72	1	72	n	0.00	0	66	0	66	n	0.00	0	93	0	93	n	0.00	0	60	0	60	n	0.00	0	119	0	119	n	0.00	0	50	0	50	n	0.00	0	50	0	50	n	0.00	0	83	0	83	n	0.00	0	71	0	71	n	0.00	0	49	0	49	n	ENSMUSG00000026603.14	Smyd2	chr1	protein_coding	SET and MYND domain containing 2
known_NIR_567	chr1	189894510	189901360	-	189894510	189902465	A5SS	ENSMUST00000175916.8	known	0.21	6	23	6	23	y	0.12	2	14	2	14	y	0.09	7	69	7	69	y	0.28	12	31	12	31	y	0.27	22	60	22	60	y	0.16	5	26	5	26	y	0.19	11	48	11	48	y	0.18	10	47	10	47	y	0.12	4	29	4	29	y	0.11	8	64	8	64	y	0.05	1	19	1	19	n	0.18	7	32	7	32	y	ENSMUSG00000010175.14	Prox1	chr1	protein_coding	prospero homeobox 1
known_NIR_568	chr1	189894510	189902225	-	189894510	189901360	5pMXE	ENSMUST00000010319.14	known	0.54	7	6	7	6	y	0.00	0	2	0	2	n	0.61	11	7	11	7	y	0.43	9	12	9	12	y	0.12	3	22	3	22	y	0.55	6	5	6	5	y	0.35	6	11	6	11	y	0.47	9	10	9	10	y	0.60	6	4	6	4	y	0.50	8	8	8	8	y	0.86	6	1	6	1	n	0.36	4	7	4	7	y	ENSMUSG00000010175.14	Prox1	chr1	protein_coding	prospero homeobox 1
known_NIR_569	chr1	189894510	189902225	-	189894510	189902465	A5SS	ENSMUST00000175916.8	known	0.23	7	23	7	23	y	0.00	0	14	0	14	n	0.14	11	69	11	69	y	0.23	9	31	9	31	y	0.05	3	60	3	60	y	0.19	6	26	6	26	y	0.11	6	48	6	48	y	0.16	9	47	9	47	y	0.17	6	29	6	29	y	0.11	8	64	8	64	y	0.24	6	19	6	19	y	0.11	4	32	4	32	y	ENSMUSG00000010175.14	Prox1	chr1	protein_coding	prospero homeobox 1
known_NIR_570	chr1	190542318	190576684	-	190542318;190566295	190566203;190576684	ES	ENSMUST00000159367.8	known	0.18	1	4.5	1	4;5	n	0.18	1	4.5	1	6;3	n	0.22	2	7.0	2	10;4	y	0.00	0	11.0	0	14;8	n	0.00	0	13.5	0	16;11	n	0.18	1	4.5	1	6;3	n	0.25	2	6.0	2	5;7	y	0.00	0	1.5	0	1;2	n	0.33	1	2.0	1	1;3	n	0.00	0	9.0	0	12;6	n	0.00	0	3.5	0	2;5	n	0.15	1	5.5	1	7;4	n	ENSMUSG00000089872.11	Rps6kc1	chr1	protein_coding	ribosomal protein S6 kinase polypeptide 1
known_NIR_571	chr1	190660955	190669641	+	190660955;190665389	190665064;190669641	ES	ENSMUST00000137608.8	known	0.06	1	14.5	1	4;25	n	0.11	2	15.5	2	2;29	y	0.05	1	19.5	1	9;30	n	0.00	0	21.5	0	4;39	n	0.00	0	26.0	0	7;45	n	0.00	0	7.5	0	1;14	n	0.05	1	19.0	1	16;22	n	0.00	0	9.5	0	1;18	n	0.12	2	14.0	2	6;22	y	0.05	1	20.0	1	4;36	n	0.00	0	12.0	0	5;19	n	0.07	1	13.5	1	3;24	n	ENSMUSG00000026634.17	Angel2	chr1	protein_coding	angel homolog 2
known_NIR_572	chr1	190660955	190669641	+	190665389	190669641	A5SS&ES	ENSMUST00000027947.13	known	0.04	1	25	1	25	n	0.06	2	29	2	29	y	0.03	1	30	1	30	n	0.00	0	39	0	39	n	0.00	0	45	0	45	n	0.00	0	14	0	14	n	0.04	1	22	1	22	n	0.00	0	18	0	18	n	0.08	2	22	2	22	y	0.03	1	36	1	36	n	0.00	0	19	0	19	n	0.04	1	24	1	24	n	ENSMUSG00000026634.17	Angel2	chr1	protein_coding	angel homolog 2
known_NIR_573	chr1	190661101	190665064	+	190660955	190665064	A5SS	ENSMUST00000137608.8	known	0.43	3	4	3	4	n	0.33	1	2	1	2	n	0.10	1	9	1	9	n	0.50	4	4	4	4	n	0.30	3	7	3	7	y	0.67	2	1	2	1	n	0.16	3	16	3	16	y	0.75	3	1	3	1	n	0.14	1	6	1	6	n	0.50	4	4	4	4	n	0.29	2	5	2	5	n	0.77	10	3	10	3	y	ENSMUSG00000026634.17	Angel2	chr1	protein_coding	angel homolog 2
known_NIR_574	chr1	190673492	190675027	+	190673492;190674444	190674318;190675027	ES	ENSMUST00000027947.13	known	0.16	4	21.0	4	14;28	y	0.04	1	27.0	1	25;29	n	0.09	3	31.5	3	22;41	y	0.00	0	29.5	0	20;39	n	0.00	0	26.0	0	23;29	n	0.00	0	19.0	0	11;27	n	0.00	0	28.5	0	16;41	n	0.00	0	25.0	0	19;31	n	0.00	0	17.0	0	9;25	n	0.03	1	31.5	1	29;34	n	0.11	3	23.5	3	18;29	y	0.00	0	42.5	0	38;47	n	ENSMUSG00000026634.17	Angel2	chr1	protein_coding	angel homolog 2
known_NIR_575	chr1	190673492	190675027	+	190674444	190675027	A5SS&ES	ENSMUST00000144693.2	known	0.12	4	28	4	28	y	0.03	1	29	1	29	n	0.07	3	41	3	41	y	0.00	0	39	0	39	n	0.00	0	29	0	29	n	0.00	0	27	0	27	n	0.00	0	41	0	41	n	0.00	0	31	0	31	n	0.00	0	25	0	25	n	0.03	1	34	1	34	n	0.09	3	29	3	29	y	0.00	0	47	0	47	n	ENSMUSG00000026634.17	Angel2	chr1	protein_coding	angel homolog 2
known_NIR_576	chr1	190781556	190785057	-	190781559	190785057	A3SS	ENSMUST00000110893.10	known	0.33	5	10	5	10	y	0.48	12	13	12	13	y	0.53	10	9	10	9	y	0.56	5	4	5	4	n	0.65	20	11	20	11	y	0.40	2	3	2	3	n	0.76	13	4	13	4	y	0.50	3	3	3	3	n	0.20	1	4	1	4	n	0.60	21	14	21	14	y	0.38	6	10	6	10	y	0.56	9	7	9	7	y	ENSMUSG00000026632.18	Tatdn3	chr1	protein_coding	TatD DNase domain containing 3
known_NIR_577	chr1	190781559	190787053	-	190781559;190785169	190785057;190787053	ES	ENSMUST00000110893.10	known	0.08	1	11.0	1	10;12	n	0.00	0	12.5	0	13;12	n	0.00	0	9.5	0	9;10	n	0.13	1	6.5	1	4;9	n	0.00	0	14.5	0	11;18	n	0.00	0	4.5	0	3;6	n	0.14	2	12.5	2	4;21	y	0.33	2	4.0	2	3;5	y	0.00	0	6.5	0	4;9	n	0.00	0	17.5	0	14;21	n	0.20	2	8.0	2	10;6	y	0.06	1	14.5	1	7;22	n	ENSMUSG00000026632.18	Tatdn3	chr1	protein_coding	TatD DNase domain containing 3
known_NIR_578	chr1	190781559	190787053	-	190785169	190787053	A3SS&ES	ENSMUST00000027945.6	known	0.08	1	12	1	12	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.10	1	9	1	9	n	0.00	0	18	0	18	n	0.00	0	6	0	6	n	0.09	2	21	2	21	y	0.29	2	5	2	5	n	0.00	0	9	0	9	n	0.00	0	21	0	21	n	0.25	2	6	2	6	n	0.04	1	22	1	22	n	ENSMUSG00000026632.18	Tatdn3	chr1	protein_coding	TatD DNase domain containing 3
known_NIR_579	chr1	191091276	191094446	-	191091252	191094446	A3SS	ENSMUST00000067976.9	known	0.00	0	269	0	269	n	0.00	0	194	0	194	n	0.00	0	223	0	223	n	0.00	0	283	0	283	n	0.00	0	341	0	341	n	0.00	0	132	0	132	n	0.00	1	364	1	364	n	0.00	0	167	0	167	n	0.00	0	224	0	224	n	0.00	2	441	2	441	y	0.00	1	246	1	246	n	0.00	0	390	0	390	n	ENSMUSG00000026626.12	Ppp2r5a	chr1	protein_coding	protein phosphatase 2, regulatory subunit B', alpha
known_NIR_580	chr1	191308063	191314511	+	191308063	191318636	A3SS	ENSMUST00000194785.2	known	0.87	20	3	20	3	y	0.95	20	1	20	1	n	0.97	37	1	37	1	n	0.90	38	4	38	4	y	0.93	54	4	54	4	y	0.87	20	3	20	3	y	0.96	23	1	23	1	n	0.93	13	1	13	1	n	1.00	15	0	15	0	n	1.00	43	0	43	0	n	1.00	10	0	10	0	n	1.00	37	0	37	0	n	ENSMUSG00000037461.11	Ints7	chr1	protein_coding	integrator complex subunit 7
known_NIR_581	chr1	191308063	191315291	+	191308063;191314640	191314511;191315291	ES	ENSMUST00000045450.7	known	0.11	3	25.0	3	20;30	y	0.00	0	21.5	0	20;23	n	0.10	4	37.0	4	37;37	y	0.12	5	38.0	5	38;38	y	0.13	7	45.5	7	54;37	y	0.04	1	23.5	1	20;27	n	0.08	2	24.5	2	23;26	y	0.05	1	21.0	1	13;29	n	0.19	4	17.5	4	15;20	y	0.03	1	34.5	1	43;26	n	0.00	0	16.0	0	10;22	n	0.07	2	28.5	2	37;20	y	ENSMUSG00000037461.11	Ints7	chr1	protein_coding	integrator complex subunit 7
known_NIR_582	chr1	191308063	191318636	+	191308063;191315437	191315291;191318636	ES	ENSMUST00000194877.6	known	0.20	3	12.0	3	3;21	y	0.12	1	7.5	1	0;15	n	0.07	1	13.0	1	4;22	n	0.16	4	21.0	4	5;37	y	0.15	4	22.0	4	7;37	y	0.21	3	11.0	3	1;21	n	0.05	1	19.0	1	2;36	n	0.11	1	8.0	1	1;15	n	0.00	0	12.0	0	4;20	n	0.00	0	15.0	0	1;29	n	0.00	0	7.0	0	0;14	n	0.00	0	17.5	0	2;33	n	ENSMUSG00000037461.11	Ints7	chr1	protein_coding	integrator complex subunit 7
known_NIR_583	chr1	191329121	191336919	+	191329121;191334474	191334357;191336919	ES	ENSMUST00000045450.7	known	0.00	0	20.0	0	18;22	n	0.00	0	16.5	0	17;16	n	0.05	2	41.5	2	39;44	y	0.00	0	37.5	0	34;41	n	0.05	2	36.5	2	35;38	y	0.00	0	20.5	0	17;24	n	0.00	0	35.5	0	34;37	n	0.00	0	20.5	0	21;20	n	0.00	0	20.5	0	14;27	n	0.00	0	32.0	0	33;31	n	0.04	1	23.0	1	21;25	n	0.03	1	35.5	1	28;43	n	ENSMUSG00000037461.11	Ints7	chr1	protein_coding	integrator complex subunit 7
known_NIR_584	chr1	191450317	191451466	+	191450709	191451466	5pMXE	ENSMUST00000110856.8	known	0.00	0	47	0	47	n	0.00	0	81	0	81	n	0.01	2	224	2	224	y	0.03	6	183	6	183	y	0.02	3	180	3	180	y	0.02	2	118	2	118	y	0.00	0	99	0	99	n	0.02	2	123	2	123	y	0.02	1	54	1	54	n	0.01	2	138	2	138	y	0.02	1	45	1	45	n	0.04	3	80	3	80	y	ENSMUSG00000026623.17	Lpgat1	chr1	protein_coding	lysophosphatidylglycerol acyltransferase 1
known_NIR_585	chr1	191450709	191451470	+	191450709	191451466	A3SS	ENSMUST00000133076.7	known	0.13	7	47	7	47	y	0.10	9	81	9	81	y	0.07	17	224	17	224	y	0.09	18	183	18	183	y	0.11	22	180	22	180	y	0.08	10	118	10	118	y	0.09	10	99	10	99	y	0.12	16	123	16	123	y	0.11	7	54	7	54	y	0.08	12	138	12	138	y	0.08	4	45	4	45	y	0.11	10	80	10	80	y	ENSMUSG00000026623.17	Lpgat1	chr1	protein_coding	lysophosphatidylglycerol acyltransferase 1
known_NIR_586	chr1	191639721	191640963	+	191639725	191640963	A5SS	ENSMUST00000044954.7	known	0.00	0	37	0	37	n	0.00	0	27	0	27	n	0.01	1	93	1	93	n	0.00	0	56	0	56	n	0.00	0	101	0	101	n	0.00	0	34	0	34	n	0.00	0	63	0	63	n	0.04	2	50	2	50	y	0.05	2	37	2	37	y	0.00	0	79	0	79	n	0.00	0	52	0	52	n	0.00	0	64	0	64	n	ENSMUSG00000037434.8	Slc30a1	chr1	protein_coding	solute carrier family 30 (zinc transporter), member 1
known_NIR_587	chr1	191785455	191800569	-	191785455;191793001	191792944;191800569	ES	ENSMUST00000110849.10	known	0.00	0	2.0	0	2;2	n	0.00	0	1.0	0	0;2	n	0.00	0	0.5	0	0;1	n	0.57	4	3.0	4	2;4	y	0.00	0	2.5	0	1;4	n	0.67	1	0.5	1	0;1	n	0.33	1	2.0	1	1;3	n	0.67	1	0.5	1	0;1	n	0.00	0	1.0	0	0;2	n	0.00	0	1.0	0	1;1	n	0.00	0	1.5	0	0;3	n	0.44	2	2.5	2	1;4	n	ENSMUSG00000037395.17	Rcor3	chr1	protein_coding	REST corepressor 3
known_NIR_588	chr1	191785455;191786167	191785926;191800569	-	191785455	191800569	cassetteExon	ENSMUST00000073279.13	known	1.00	1.0	0	2;0	0	n	1.00	3.0	0	4;2	0	n	1.00	2.0	0	4;0	0	n	0.33	2.0	4	4;0	4	n	1.00	2.5	0	4;1	0	n	0.67	2.0	1	4;0	1	n	0.50	1.0	1	2;0	1	n	0.50	1.0	1	0;2	1	n	1.00	1.5	0	1;2	0	n	1.00	4.0	0	5;3	0	n	1.00	1.0	0	2;0	0	n	0.69	4.5	2	5;4	2	y	ENSMUSG00000037395.17	Rcor3	chr1	protein_coding	REST corepressor 3
known_NIR_589	chr1	191812328;191814237	191814124;191814683	-	191812328	191814683	cassetteExon	ENSMUST00000110849.10	known	0.00	0.0	2	0;0	2	n	0.12	1.0	7	2;0	7	n	0.38	2.5	4	4;1	4	n	0.00	0.0	12	0;0	12	n	0.20	3.5	14	2;5	14	y	0.00	0.0	4	0;0	4	n	0.10	1.0	9	1;1	9	n	0.17	1.0	5	0;2	5	n	0.29	2.0	5	3;1	5	n	0.11	1.5	12	3;0	12	n	0.25	1.0	3	2;0	3	n	0.28	3.5	9	3;4	9	y	ENSMUSG00000037395.17	Rcor3	chr1	protein_coding	REST corepressor 3
known_NIR_590	chr1	192796288	192796913	-	192796195	192796913	A3SS	ENSMUST00000194412.2	known	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.62	8	5	8	5	y	1.00	5	0	5	0	n	1.00	12	0	12	0	n	-	-	-	-	-	-	0.60	3	2	3	2	n	0.00	0	1	0	1	n	1.00	5	0	5	0	n	0.80	4	1	4	1	n	1.00	3	0	3	0	n	1.00	3	0	3	0	n	ENSMUSG00000016181.10	Utp25	chr1	protein_coding	UTP25 small subunit processome component
known_NIR_591	chr1	192796288	192796913	-	192796310	192796913	A3SS	ENSMUST00000193460.6	known	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.44	8	10	8	10	y	0.25	5	15	5	15	y	0.50	12	12	12	12	y	0.00	0	9	0	9	n	0.21	3	11	3	11	y	0.00	0	10	0	10	n	0.38	5	8	5	8	y	0.21	4	15	4	15	y	0.19	3	13	3	13	y	0.23	3	10	3	10	y	ENSMUSG00000016181.10	Utp25	chr1	protein_coding	UTP25 small subunit processome component
known_NIR_592	chr1	192796310	192796913	-	192796195	192796913	A3SS	ENSMUST00000194412.2	known	0.77	10	3	10	3	y	0.87	13	2	13	2	y	0.67	10	5	10	5	y	1.00	15	0	15	0	n	1.00	12	0	12	0	n	1.00	9	0	9	0	n	0.85	11	2	11	2	y	0.91	10	1	10	1	n	1.00	8	0	8	0	n	0.94	15	1	15	1	n	1.00	13	0	13	0	n	1.00	10	0	10	0	n	ENSMUSG00000016181.10	Utp25	chr1	protein_coding	UTP25 small subunit processome component
known_NIR_593	chr1	192804486	192805946	-	192804402	192805946	A3SS	ENSMUST00000085555.7	known	0.00	0	19	0	19	n	0.00	0	5	0	5	n	0.00	0	15	0	15	n	0.00	0	18	0	18	n	0.00	0	22	0	22	n	0.00	0	14	0	14	n	0.08	1	11	1	11	n	0.00	0	11	0	11	n	0.10	1	9	1	9	n	0.11	2	17	2	17	y	0.00	0	13	0	13	n	0.25	4	12	4	12	y	ENSMUSG00000016181.10	Utp25	chr1	protein_coding	UTP25 small subunit processome component
known_NIR_594	chr1	192911979	192922539	-	192906073	192922539	A3SS	ENSMUST00000016338.15	known	0.02	18	1167	18	1167	y	0.02	23	1066	23	1066	y	0.00	0	300	0	300	n	0.00	0	1311	0	1311	n	0.02	16	902	16	902	y	0.00	0	183	0	183	n	0.02	25	1078	25	1078	y	0.02	5	310	5	310	y	0.00	0	1317	0	1317	n	0.02	41	1822	41	1822	y	0.00	0	1703	0	1703	n	0.00	0	1555	0	1555	n	ENSMUSG00000016194.15	Hsd11b1	chr1	protein_coding	hydroxysteroid 11-beta dehydrogenase 1
known_NIR_595	chr1	192920905	192922539	-	192906073	192922539	A3SS	ENSMUST00000016338.15	known	0.00	0	1167	0	1167	n	0.00	0	1066	0	1066	n	0.00	0	300	0	300	n	0.00	5	1311	5	1311	y	0.01	7	902	7	902	y	0.00	0	183	0	183	n	0.00	2	1078	2	1078	y	0.01	2	310	2	310	y	0.00	0	1317	0	1317	n	0.00	2	1822	2	1822	y	0.00	2	1703	2	1703	y	0.00	2	1555	2	1555	y	ENSMUSG00000016194.15	Hsd11b1	chr1	protein_coding	hydroxysteroid 11-beta dehydrogenase 1
known_NIR_596	chr1	192920905	192922539	-	192911979	192922539	A3SS	ENSMUST00000161406.2	known	0.00	0	18	0	18	n	0.00	0	23	0	23	n	-	-	-	-	-	-	1.00	5	0	5	0	n	0.30	7	16	7	16	y	-	-	-	-	-	-	0.07	2	25	2	25	y	0.29	2	5	2	5	n	-	-	-	-	-	-	0.05	2	41	2	41	y	1.00	2	0	2	0	n	1.00	2	0	2	0	n	ENSMUSG00000016194.15	Hsd11b1	chr1	protein_coding	hydroxysteroid 11-beta dehydrogenase 1
known_NIR_597	chr1	194641538	194642088	+	194641538	194642244	A3SS	ENSMUST00000016638.8	known	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.19	4	17	4	17	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000016494.10	Cd34	chr1	protein_coding	CD34 antigen
known_NIR_598	chr1	194781149	194793388	-	194781149;194789230	194789126;194793388	ES	ENSMUST00000193094.6	known	0.20	21	82.5	21	2;163	y	0.33	34	68.5	34	0;137	n	0.34	33	64.0	33	3;125	y	0.26	20	56.0	20	1;111	n	0.36	44	77.5	44	4;151	y	0.30	17	40.0	17	4;76	y	0.31	37	81.5	37	4;159	y	0.33	19	38.0	19	1;75	n	0.25	20	60.5	20	2;119	y	0.36	50	88.5	50	7;170	y	0.36	35	62.5	35	5;120	y	0.35	39	72.0	39	6;138	y	ENSMUSG00000016481.16	Cr1l	chr1	protein_coding	complement component (3b/4b) receptor 1-like
known_NIR_599	chr1	194786215	194789126	-	194781149	194789126	A3SS	ENSMUST00000193094.6	known	0.98	117	2	117	2	y	1.00	152	0	152	0	n	0.97	97	3	97	3	y	0.99	109	1	109	1	n	0.97	147	4	147	4	y	0.93	56	4	56	4	y	0.97	144	4	144	4	y	0.99	83	1	83	1	n	0.98	96	2	96	2	y	0.95	134	7	134	7	y	0.96	108	5	108	5	y	0.95	106	6	106	6	y	ENSMUSG00000016481.16	Cr1l	chr1	protein_coding	complement component (3b/4b) receptor 1-like
known_NIR_600	chr1	194786215	194793388	-	194781149	194793388	A3SS	ENSMUST00000194111.6	known	0.05	1	21	1	21	n	0.03	1	34	1	34	n	0.06	2	33	2	33	y	0.00	0	20	0	20	n	0.04	2	44	2	44	y	0.00	0	17	0	17	n	0.10	4	37	4	37	y	0.10	2	19	2	19	y	0.05	1	20	1	20	n	0.09	5	50	5	50	y	0.10	4	35	4	35	y	0.07	3	39	3	39	y	ENSMUSG00000016481.16	Cr1l	chr1	protein_coding	complement component (3b/4b) receptor 1-like
known_NIR_601	chr1	194786215	194793388	-	194786215;194789230	194789126;194793388	ES	ENSMUST00000075451.12	known	0.01	1	140.0	1	117;163	n	0.01	1	144.5	1	152;137	n	0.02	2	111.0	2	97;125	y	0.00	0	110.0	0	109;111	n	0.01	2	149.0	2	147;151	y	0.00	0	66.0	0	56;76	n	0.03	4	151.5	4	144;159	y	0.02	2	79.0	2	83;75	y	0.01	1	107.5	1	96;119	n	0.03	5	152.0	5	134;170	y	0.03	4	114.0	4	108;120	y	0.02	3	122.0	3	106;138	y	ENSMUSG00000016481.16	Cr1l	chr1	protein_coding	complement component (3b/4b) receptor 1-like
known_NIR_602	chr1	194786215	194793388	-	194789230	194793388	A3SS&ES	ENSMUST00000193094.6	known	0.01	1	163	1	163	n	0.01	1	137	1	137	n	0.02	2	125	2	125	y	0.00	0	111	0	111	n	0.01	2	151	2	151	y	0.00	0	76	0	76	n	0.02	4	159	4	159	y	0.03	2	75	2	75	y	0.01	1	119	1	119	n	0.03	5	170	5	170	y	0.03	4	120	4	120	y	0.02	3	138	3	138	y	ENSMUSG00000016481.16	Cr1l	chr1	protein_coding	complement component (3b/4b) receptor 1-like
known_NIR_603	chr1	194812317	194813368	-	194812317	194813496	A5SS	ENSMUST00000193094.6	known	0.04	2	54	2	54	y	0.12	5	38	5	38	y	0.04	4	85	4	85	y	0.03	3	84	3	84	y	0.04	5	108	5	108	y	0.03	2	56	2	56	y	0.06	5	82	5	82	y	0.06	4	66	4	66	y	0.10	6	54	6	54	y	0.10	9	81	9	81	y	0.10	5	44	5	44	y	0.04	3	76	3	76	y	ENSMUSG00000016481.16	Cr1l	chr1	protein_coding	complement component (3b/4b) receptor 1-like
known_NIR_604	chr1	194812317	194813396	-	194812317	194813496	A5SS	ENSMUST00000193094.6	known	0.02	1	54	1	54	n	0.00	0	38	0	38	n	0.00	0	85	0	85	n	0.02	2	84	2	84	y	0.04	4	108	4	108	y	0.00	0	56	0	56	n	0.00	0	82	0	82	n	0.01	1	66	1	66	n	0.00	0	54	0	54	n	0.00	0	81	0	81	n	0.02	1	44	1	44	n	0.04	3	76	3	76	y	ENSMUSG00000016481.16	Cr1l	chr1	protein_coding	complement component (3b/4b) receptor 1-like
known_NIR_605	chr1	194812317	194813396	-	194812317	194813810	A5SS	ENSMUST00000191775.2	known	0.06	1	16	1	16	n	0.00	0	20	0	20	n	0.00	0	25	0	25	n	0.06	2	30	2	30	y	0.11	4	31	4	31	y	0.00	0	19	0	19	n	0.00	0	20	0	20	n	0.05	1	20	1	20	n	0.00	0	30	0	30	n	0.00	0	24	0	24	n	0.03	1	32	1	32	n	0.10	3	28	3	28	y	ENSMUSG00000016481.16	Cr1l	chr1	protein_coding	complement component (3b/4b) receptor 1-like
known_NIR_606	chr1	194812317	194813810	-	194812317	194813368	5pMXE	ENSMUST00000194111.6	known	0.89	16	2	16	2	y	0.80	20	5	20	5	y	0.86	25	4	25	4	y	0.91	30	3	30	3	y	0.86	31	5	31	5	y	0.90	19	2	19	2	y	0.80	20	5	20	5	y	0.83	20	4	20	4	y	0.83	30	6	30	6	y	0.73	24	9	24	9	y	0.86	32	5	32	5	y	0.90	28	3	28	3	y	ENSMUSG00000016481.16	Cr1l	chr1	protein_coding	complement component (3b/4b) receptor 1-like
known_NIR_607	chr1	194812317	194813810	-	194812317	194813496	5pMXE	ENSMUST00000193094.6	known	0.23	16	54	16	54	y	0.34	20	38	20	38	y	0.23	25	85	25	85	y	0.26	30	84	30	84	y	0.22	31	108	31	108	y	0.25	19	56	19	56	y	0.20	20	82	20	82	y	0.23	20	66	20	66	y	0.36	30	54	30	54	y	0.23	24	81	24	81	y	0.42	32	44	32	44	y	0.27	28	76	28	76	y	ENSMUSG00000016481.16	Cr1l	chr1	protein_coding	complement component (3b/4b) receptor 1-like
known_NIR_608	chr1	21296903	21299632	+	21296903	21299815	A3SS	ENSMUST00000027065.12	known	0.09	2	20	2	20	y	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.03	1	28	1	28	n	0.05	1	18	1	18	n	0.00	0	1	0	1	n	0.05	1	21	1	21	n	0.00	0	1	0	1	n	0.03	1	28	1	28	n	0.08	2	24	2	24	y	0.00	0	21	0	21	n	0.00	0	14	0	14	n	ENSMUSG00000025933.16	Tmem14a	chr1	protein_coding	transmembrane protein 14A
known_NIR_609	chr1	21310883;21315256	21315162;21319975	+	21310883	21319975	cassetteExon	ENSMUST00000027067.15	known	0.12	223.0	1706	131;315	1706	y	0.11	105.5	869	59;152	869	y	0.11	14.5	123	8;21	123	y	0.12	207.0	1464	132;282	1464	y	0.14	176.0	1041	102;250	1041	y	0.11	17.0	133	6;28	133	y	0.14	221.5	1409	143;300	1409	y	0.15	40.5	230	26;55	230	y	0.13	288.5	1888	170;407	1888	y	0.12	336.5	2413	204;469	2413	y	0.13	288.0	1944	160;416	1944	y	0.12	320.0	2289	193;447	2289	y	ENSMUSG00000025934.16	Gsta3	chr1	protein_coding	glutathione S-transferase, alpha 3
known_NIR_610	chr1	21320082;21325047	21324908;21327555	+	21320082	21327555	cassetteExon	ENSMUST00000027067.15	known	0.06	287.5	4527	265;310	4527	y	0.06	152.0	2548	143;161	2548	y	0.05	15.0	287	17;13	287	y	0.06	249.0	4219	233;265	4219	y	0.06	183.5	2986	189;178	2986	y	0.06	20.0	325	19;21	325	y	0.06	256.0	3927	246;266	3927	y	0.06	33.5	563	33;34	563	y	0.05	265.5	5147	238;293	5147	y	0.07	458.5	6592	464;453	6592	y	0.06	340.0	5499	311;369	5499	y	0.05	314.0	6517	285;343	6517	y	ENSMUSG00000025934.16	Gsta3	chr1	protein_coding	glutathione S-transferase, alpha 3
known_NIR_611	chr1	21361660	21363704	-	21361589	21363704	A3SS	ENSMUST00000082032.13	known	0.00	0	22	0	22	n	0.31	4	9	4	9	y	0.00	0	2	0	2	n	0.12	2	15	2	15	y	0.09	1	10	1	10	n	-	-	-	-	-	-	0.10	2	18	2	18	y	0.00	0	4	0	4	n	0.08	5	61	5	61	y	0.06	2	34	2	34	y	0.08	7	85	7	85	y	0.06	4	68	4	68	y	ENSMUSG00000025936.16	Gm4956	chr1	transcribed_unprocessed_pseudogene	predicted gene 4956
known_NIR_612	chr1	23905378;23910599	23910519;23915455	-	23905378	23915455	cassetteExon	ENSMUST00000027339.14	known	0.00	0.0	37	0;0	37	n	0.00	0.0	32	0;0	32	n	0.00	0.0	74	0;0	74	n	0.02	1.5	59	1;2	59	n	0.01	0.5	52	0;1	52	n	0.05	1.0	18	0;2	18	n	0.04	2.5	56	2;3	56	y	0.00	0.0	50	0;0	50	n	0.00	0.0	33	0;0	33	n	0.02	1.0	40	1;1	40	n	0.00	0.0	29	0;0	29	n	0.04	1.5	39	2;1	39	n	ENSMUSG00000026155.14	Smap1	chr1	protein_coding	small ArfGAP 1
known_NIR_613	chr1	24065792	24067281	-	24065849	24067281	A3SS	ENSMUST00000188712.7	known	0.06	2	34	2	34	y	0.00	0	29	0	29	n	0.00	0	76	0	76	n	0.00	0	28	0	28	n	0.02	1	60	1	60	n	0.00	0	35	0	35	n	0.02	1	52	1	52	n	0.00	0	34	0	34	n	0.00	0	33	0	33	n	0.05	2	42	2	42	y	0.00	0	35	0	35	n	0.00	0	53	0	53	n	ENSMUSG00000026153.16	Fam135a	chr1	protein_coding	family with sequence similarity 135, member A
known_NIR_614	chr1	24065904	24067281	-	24065849	24067281	A3SS	ENSMUST00000188712.7	known	0.00	0	34	0	34	n	0.00	0	29	0	29	n	0.05	4	76	4	76	y	0.00	0	28	0	28	n	0.02	1	60	1	60	n	0.00	0	35	0	35	n	0.00	0	52	0	52	n	0.00	0	34	0	34	n	0.00	0	33	0	33	n	0.00	0	42	0	42	n	0.00	0	35	0	35	n	0.00	0	53	0	53	n	ENSMUSG00000026153.16	Fam135a	chr1	protein_coding	family with sequence similarity 135, member A
known_NIR_615	chr1	24069609	24069823	-	24069021	24069823	A3SS	ENSMUST00000188712.7	known	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.10	4	36	4	36	y	0.04	1	25	1	25	n	0.07	2	27	2	27	y	0.14	3	18	3	18	y	0.00	0	18	0	18	n	0.04	1	27	1	27	n	0.25	4	12	4	12	y	0.21	3	11	3	11	y	0.27	4	11	4	11	y	0.12	4	28	4	28	y	ENSMUSG00000026153.16	Fam135a	chr1	protein_coding	family with sequence similarity 135, member A
known_NIR_616	chr1	24085488	24092264	-	24085488;24088288	24088211;24092264	ES	ENSMUST00000188712.7	known	0.00	0	12.0	0	14;10	n	0.00	0	6.5	0	4;9	n	0.00	0	39.0	0	37;41	n	0.00	0	15.0	0	19;11	n	0.00	0	42.5	0	50;35	n	0.00	0	13.5	0	13;14	n	0.00	0	23.0	0	29;17	n	0.00	0	18.0	0	21;15	n	0.00	0	10.5	0	13;8	n	0.00	0	29.0	0	28;30	n	0.00	0	11.5	0	10;13	n	0.11	3	23.5	3	26;21	y	ENSMUSG00000026153.16	Fam135a	chr1	protein_coding	family with sequence similarity 135, member A
known_NIR_617	chr1	24125692;24137800	24137712;24139142	-	24125692	24139142	cassetteExon	ENSMUST00000187752.7	known	0.14	1.0	6	1;1	6	n	-	-	-	-	-	-	0.02	0.5	22	1;0	22	n	0.00	0.0	9	0;0	9	n	0.08	2.0	23	2;2	23	y	0.00	0.0	9	0;0	9	n	0.21	3.0	11	5;1	11	n	0.00	0.0	9	0;0	9	n	0.00	0.0	3	0;0	3	n	0.00	0.0	11	0;0	11	n	0.25	1.0	3	1;1	3	n	0.04	0.5	11	1;0	11	n	ENSMUSG00000026153.16	Fam135a	chr1	protein_coding	family with sequence similarity 135, member A
known_NIR_618	chr1	24718115	24724478	+	24717897	24724478	A5SS	ENSMUST00000191471.7	known	0.06	3	44	3	44	y	0.05	1	20	1	20	n	0.01	1	71	1	71	n	0.07	4	52	4	52	y	0.02	1	63	1	63	n	0.02	1	43	1	43	n	0.00	0	50	0	50	n	0.00	0	53	0	53	n	0.00	0	51	0	51	n	0.04	3	69	3	69	y	0.06	2	32	2	32	y	0.05	3	61	3	61	y	ENSMUSG00000073725.9	Lmbrd1	chr1	protein_coding	LMBR1 domain containing 1
known_NIR_619	chr1	24745125	24746006	+	24745125	24750593	A3SS	ENSMUST00000191471.7	known	0.05	3	61	3	61	y	0.00	0	31	0	31	n	0.02	3	130	3	130	y	0.00	0	104	0	104	n	0.00	0	123	0	123	n	0.03	2	62	2	62	y	0.00	0	80	0	80	n	0.04	3	80	3	80	y	0.02	1	58	1	58	n	0.01	1	117	1	117	n	0.00	0	58	0	58	n	0.00	0	101	0	101	n	ENSMUSG00000073725.9	Lmbrd1	chr1	protein_coding	LMBR1 domain containing 1
known_NIR_620	chr1	30863600	30868924	-	30863600	30876186	A5SS	ENSMUST00000191064.7	known	0.91	21	2	21	2	y	0.80	8	2	8	2	y	0.92	33	3	33	3	y	0.96	23	1	23	1	n	0.79	44	12	44	12	y	0.89	16	2	16	2	y	0.93	26	2	26	2	y	0.67	14	7	14	7	y	0.82	18	4	18	4	y	0.90	27	3	27	3	y	0.77	10	3	10	3	y	0.95	35	2	35	2	y	ENSMUSG00000048874.16	Phf3	chr1	protein_coding	PHD finger protein 3
known_NIR_621	chr1	30863600	30868924	-	30863600	30902068	A5SS	ENSMUST00000187600.2	known	0.91	21	2	21	2	y	1.00	8	0	8	0	n	0.89	33	4	33	4	y	0.82	23	5	23	5	y	0.88	44	6	44	6	y	1.00	16	0	16	0	n	1.00	26	0	26	0	n	0.93	14	1	14	1	n	0.86	18	3	18	3	y	0.90	27	3	27	3	y	1.00	10	0	10	0	n	0.97	35	1	35	1	n	ENSMUSG00000048874.16	Phf3	chr1	protein_coding	PHD finger protein 3
known_NIR_622	chr1	30863600	30868924	-	30863600	30912659	A5SS	ENSMUST00000186105.7	known	1.00	21	0	21	0	n	0.89	8	1	8	1	n	1.00	33	0	33	0	n	0.96	23	1	23	1	n	0.96	44	2	44	2	y	0.84	16	3	16	3	y	0.96	26	1	26	1	n	0.93	14	1	14	1	n	0.90	18	2	18	2	y	0.90	27	3	27	3	y	1.00	10	0	10	0	n	0.90	35	4	35	4	y	ENSMUSG00000048874.16	Phf3	chr1	protein_coding	PHD finger protein 3
known_NIR_623	chr1	30863600	30876186	-	30863600	30912659	A5SS	ENSMUST00000186105.7	known	1.00	2	0	2	0	n	0.67	2	1	2	1	n	1.00	3	0	3	0	n	0.50	1	1	1	1	n	0.86	12	2	12	2	y	0.40	2	3	2	3	n	0.67	2	1	2	1	n	0.88	7	1	7	1	n	0.67	4	2	4	2	n	0.50	3	3	3	3	n	1.00	3	0	3	0	n	0.33	2	4	2	4	n	ENSMUSG00000048874.16	Phf3	chr1	protein_coding	PHD finger protein 3
known_NIR_624	chr1	30863600	30876186	-	30863600;30870640	30868924;30876186	ES	ENSMUST00000186733.7	known	0.11	2	16.0	2	21;11	y	0.20	2	8.0	2	8;8	y	0.10	3	26.5	3	33;20	y	0.04	1	22.0	1	23;21	n	0.26	12	34.5	12	44;25	y	0.14	2	12.5	2	16;9	y	0.07	2	28.0	2	26;30	y	0.36	7	12.5	7	14;11	y	0.23	4	13.5	4	18;9	y	0.12	3	21.5	3	27;16	y	0.30	3	7.0	3	10;4	y	0.07	2	26.5	2	35;18	y	ENSMUSG00000048874.16	Phf3	chr1	protein_coding	PHD finger protein 3
known_NIR_625	chr1	30863600	30902068	-	30863600;30876347	30876186;30902068	ES	ENSMUST00000191064.7	known	0.57	2	1.5	2	2;1	n	0.00	0	4.5	0	2;7	n	0.31	4	9.0	4	3;15	y	0.48	5	5.5	5	1;10	n	0.29	6	14.5	6	12;17	y	0.00	0	7.5	0	2;13	n	0.00	0	7.5	0	2;13	n	0.09	1	10.0	1	7;13	n	0.29	3	7.5	3	4;11	y	0.17	3	15.0	3	3;27	y	0.00	0	6.0	0	3;9	n	0.08	1	11.0	1	2;20	n	ENSMUSG00000048874.16	Phf3	chr1	protein_coding	PHD finger protein 3
known_NIR_626	chr1	30863600;30902336	30902068;30912659	-	30863600	30912659	cassetteExon	ENSMUST00000186105.7	known	1.00	5.0	0	2;8	0	n	0.67	2.0	1	0;4	1	n	1.00	9.5	0	4;15	0	n	0.83	5.0	1	5;5	1	n	0.80	8.0	2	6;10	2	y	0.25	1.0	3	0;2	3	n	0.67	2.0	1	0;4	1	n	0.83	5.0	1	1;9	1	n	0.64	3.5	2	3;4	2	n	0.60	4.5	3	3;6	3	y	1.00	3.0	0	0;6	0	n	0.64	7.0	4	1;13	4	n	ENSMUSG00000048874.16	Phf3	chr1	protein_coding	PHD finger protein 3
known_NIR_627	chr1	30870640	30876186	-	30863600	30876186	A3SS	ENSMUST00000191064.7	known	0.85	11	2	11	2	y	0.80	8	2	8	2	y	0.87	20	3	20	3	y	0.95	21	1	21	1	n	0.68	25	12	25	12	y	0.82	9	2	9	2	y	0.94	30	2	30	2	y	0.61	11	7	11	7	y	0.69	9	4	9	4	y	0.84	16	3	16	3	y	0.57	4	3	4	3	n	0.90	18	2	18	2	y	ENSMUSG00000048874.16	Phf3	chr1	protein_coding	PHD finger protein 3
known_NIR_628	chr1	30870640	30902068	-	30870640;30876347	30876186;30902068	ES	ENSMUST00000186733.7	known	0.14	1	6.0	1	11;1	n	0.12	1	7.5	1	8;7	n	0.19	4	17.5	4	20;15	y	0.11	2	15.5	2	21;10	y	0.09	2	21.0	2	25;17	y	0.21	3	11.0	3	9;13	y	0.12	3	21.5	3	30;13	y	0.20	3	12.0	3	11;13	y	0.00	0	10.0	0	9;11	n	0.04	1	21.5	1	16;27	n	0.24	2	6.5	2	4;9	y	0.30	8	19.0	8	18;20	y	ENSMUSG00000048874.16	Phf3	chr1	protein_coding	PHD finger protein 3
known_NIR_629	chr1	30870640	30902068	-	30876347	30902068	A3SS&ES	ENSMUST00000191064.7	known	0.50	1	1	1	1	n	0.12	1	7	1	7	n	0.21	4	15	4	15	y	0.17	2	10	2	10	y	0.11	2	17	2	17	y	0.19	3	13	3	13	y	0.19	3	13	3	13	y	0.19	3	13	3	13	y	0.00	0	11	0	11	n	0.04	1	27	1	27	n	0.18	2	9	2	9	y	0.29	8	20	8	20	y	ENSMUSG00000048874.16	Phf3	chr1	protein_coding	PHD finger protein 3
known_NIR_630	chr1	30902336	30912104	-	30902336	30912659	A5SS	ENSMUST00000186733.7	known	0.00	0	8	0	8	n	0.20	1	4	1	4	n	0.17	3	15	3	15	y	0.44	4	5	4	5	n	0.17	2	10	2	10	y	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.25	3	9	3	9	y	0.00	0	4	0	4	n	0.25	2	6	2	6	n	0.14	1	6	1	6	n	0.19	3	13	3	13	y	ENSMUSG00000048874.16	Phf3	chr1	protein_coding	PHD finger protein 3
known_NIR_631	chr1	30985717	30988630	-	30985720	30988630	A3SS	ENSMUST00000233506.2	known	0.16	22	113	22	113	y	0.13	14	95	14	95	y	0.14	59	363	59	363	y	0.16	38	198	38	198	y	0.12	34	253	34	253	y	0.12	28	197	28	197	y	0.18	31	139	31	139	y	0.16	23	119	23	119	y	0.15	17	95	17	95	y	0.15	34	187	34	187	y	0.13	14	96	14	96	y	0.12	28	200	28	200	y	ENSMUSG00000117310.3	Ptp4a1	chr1	protein_coding	protein tyrosine phosphatase 4a1
known_NIR_632	chr1	30985720	30988630	-	30985720	30988078	5pMXE	ENSMUST00000232841.2	known	0.96	113	5	113	5	y	0.96	95	4	95	4	y	0.97	363	12	363	12	y	0.98	198	4	198	4	y	0.97	253	8	253	8	y	0.98	197	4	197	4	y	0.95	139	8	139	8	y	0.94	119	7	119	7	y	0.95	95	5	95	5	y	0.97	187	6	187	6	y	0.98	96	2	96	2	y	0.98	200	4	200	4	y	ENSMUSG00000026064.17	Ptp4a1	chr1	protein_coding	protein tyrosine phosphatase 4a1
known_NIR_633	chr1	33819130	33821149	-	33819130	33844420	A5SS	ENSMUST00000115167.8	known	1.00	7	0	7	0	n	1.00	11	0	11	0	n	0.95	19	1	19	1	n	1.00	5	0	5	0	n	1.00	19	0	19	0	n	1.00	8	0	8	0	n	0.85	11	2	11	2	y	1.00	6	0	6	0	n	1.00	1	0	1	0	n	1.00	10	0	10	0	n	1.00	7	0	7	0	n	1.00	14	0	14	0	n	ENSMUSG00000042197.14	Zfp451	chr1	protein_coding	zinc finger protein 451
known_NIR_634	chr1	33823045	33844420	-	33823045;33825613	33825488;33844420	ES	ENSMUST00000019861.13	known	0.29	2	5.0	2	8;2	y	0.00	0	5.5	0	8;3	n	0.08	1	12.0	1	16;8	n	0.00	0	7.0	0	8;6	n	0.00	0	13.5	0	19;8	n	0.17	1	5.0	1	5;5	n	0.00	0	11.5	0	7;16	n	0.00	0	5.0	0	6;4	n	0.35	3	5.5	3	8;3	y	0.32	3	6.5	3	8;5	y	0.00	0	5.5	0	7;4	n	0.07	1	13.0	1	17;9	n	ENSMUSG00000042197.14	Zfp451	chr1	protein_coding	zinc finger protein 451
known_NIR_635	chr1	33825613	33844420	-	33819130	33844420	A3SS	ENSMUST00000115167.8	known	1.00	2	0	2	0	n	1.00	3	0	3	0	n	0.89	8	1	8	1	n	1.00	6	0	6	0	n	1.00	8	0	8	0	n	1.00	5	0	5	0	n	0.89	16	2	16	2	y	1.00	4	0	4	0	n	1.00	3	0	3	0	n	1.00	5	0	5	0	n	1.00	4	0	4	0	n	1.00	9	0	9	0	n	ENSMUSG00000042197.14	Zfp451	chr1	protein_coding	zinc finger protein 451
known_NIR_636	chr1	33842694	33844420	-	33825613	33844420	A3SS	ENSMUST00000019861.13	known	0.33	1	2	1	2	n	0.50	3	3	3	3	n	0.38	5	8	5	8	y	0.00	0	6	0	6	n	0.11	1	8	1	8	n	0.17	1	5	1	5	n	0.11	2	16	2	16	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.10	1	9	1	9	n	ENSMUSG00000042197.14	Zfp451	chr1	protein_coding	zinc finger protein 451
known_NIR_637	chr1	34277984	34281700	+	34268327	34281700	A5SS	ENSMUST00000183034.5	known	1.00	12	0	12	0	n	0.88	14	2	14	2	y	0.86	30	5	30	5	y	1.00	29	0	29	0	n	0.86	24	4	24	4	y	0.96	25	1	25	1	n	0.71	25	10	25	10	y	0.91	21	2	21	2	y	0.87	26	4	26	4	y	0.89	33	4	33	4	y	1.00	20	0	20	0	n	0.91	32	3	32	3	y	ENSMUSG00000026131.21	Dst	chr1	protein_coding	dystonin
known_NIR_638	chr1	34334617	34338802	+	34334617;34335840	34335823;34338802	ES	ENSMUST00000183034.5	known	0.05	4	82.5	4	83;82	y	0.04	3	65.0	3	63;67	y	0.07	8	112.0	8	118;106	y	0.03	3	94.5	3	94;95	y	0.06	6	93.5	6	94;93	y	0.07	4	51.0	4	52;50	y	0.05	6	104.5	6	107;102	y	0.04	2	52.0	2	53;51	y	0.08	5	60.5	5	64;57	y	0.05	6	114.5	6	116;113	y	0.00	0	69.0	0	70;68	n	0.11	12	101.5	12	107;96	y	ENSMUSG00000026131.21	Dst	chr1	protein_coding	dystonin
known_NIR_639	chr1	34338919	34341911	+	34338919;34341013	34340942;34341911	ES	ENSMUST00000183034.5	known	0.96	86	4.0	86	4;4	y	0.99	70	0.5	70	1;0	n	0.97	89	2.5	89	3;2	y	0.99	102	1.5	102	0;3	n	0.99	83	1.0	83	2;0	n	0.99	42	0.5	42	1;0	n	0.81	91	21.5	91	18;25	y	1.00	37	0.0	37	0;0	n	0.99	56	0.5	56	0;1	n	0.99	82	0.5	82	0;1	n	0.99	54	0.5	54	1;0	n	0.97	71	2.0	71	2;2	y	ENSMUSG00000026131.21	Dst	chr1	protein_coding	dystonin
known_NIR_640	chr1	34342113	34345609	+	34342113	34342502	3pMXE	ENSMUST00000183100.8	known	0.02	2	98	2	98	y	0.00	0	105	0	105	n	0.00	0	131	0	131	n	0.01	1	103	1	103	n	0.01	1	159	1	159	n	0.01	1	77	1	77	n	0.00	0	120	0	120	n	0.02	1	60	1	60	n	0.04	3	73	3	73	y	0.01	1	103	1	103	n	0.02	2	87	2	87	y	0.00	0	119	0	119	n	ENSMUSG00000026131.21	Dst	chr1	protein_coding	dystonin
known_NIR_641	chr1	34342113	34345609	+	34342113;34342612	34342502;34345609	ES	ENSMUST00000183034.5	known	0.02	2	100.5	2	98;103	y	0.00	0	106.0	0	105;107	n	0.00	0	134.5	0	131;138	n	0.01	1	111.5	1	103;120	n	0.01	1	148.0	1	159;137	n	0.01	1	68.5	1	77;60	n	0.00	0	110.5	0	120;101	n	0.02	1	64.0	1	60;68	n	0.04	3	81.0	3	73;89	y	0.01	1	106.5	1	103;110	n	0.02	2	85.5	2	87;84	y	0.00	0	111.5	0	119;104	n	ENSMUSG00000026131.21	Dst	chr1	protein_coding	dystonin
known_NIR_642	chr1	34482185	34482459	+	34482074	34482459	A5SS	ENSMUST00000027303.14	known	0.04	3	65	3	65	y	0.00	0	57	0	57	n	0.02	2	92	2	92	y	0.02	1	59	1	59	n	0.04	3	69	3	69	y	0.02	1	57	1	57	n	0.01	1	69	1	69	n	0.00	0	58	0	58	n	0.00	0	41	0	41	n	0.04	4	100	4	100	y	0.02	1	58	1	58	n	0.02	2	90	2	90	y	ENSMUSG00000026127.14	Imp4	chr1	protein_coding	IMP4, U3 small nucleolar ribonucleoprotein
known_NIR_643	chr1	34512490	34514725	+	34512490	34512660	3pMXE	ENSMUST00000027302.14	known	0.04	1	24	1	24	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	17	0	17	n	0.00	0	30	0	30	n	0.00	0	9	0	9	n	0.00	0	25	0	25	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	18	0	18	n	0.19	5	21	5	21	y	0.00	0	15	0	15	n	ENSMUSG00000026126.16	Ptpn18	chr1	protein_coding	protein tyrosine phosphatase, non-receptor type 18
known_NIR_644	chr1	34858871	34858948	-	34858850	34858948	A3SS	ENSMUST00000167518.8	known	0.20	7	28	7	28	y	0.13	4	27	4	27	y	0.05	4	81	4	81	y	0.20	12	49	12	49	y	0.06	5	72	5	72	y	0.11	5	42	5	42	y	0.12	6	43	6	43	y	0.20	11	43	11	43	y	0.14	5	30	5	30	y	0.17	11	53	11	53	y	0.14	5	30	5	30	y	0.06	4	62	4	62	y	ENSMUSG00000037503.13	Fam168b	chr1	protein_coding	family with sequence similarity 168, member B
known_NIR_645	chr1	34859044	34867848	-	34859090	34867848	A3SS	ENSMUST00000047534.12	known	0.00	0	31	0	31	n	0.00	0	30	0	30	n	0.03	2	60	2	60	y	0.00	0	36	0	36	n	0.07	4	57	4	57	y	0.00	0	30	0	30	n	0.00	0	48	0	48	n	0.03	1	39	1	39	n	0.00	0	25	0	25	n	0.06	4	63	4	63	y	0.00	0	33	0	33	n	0.00	0	62	0	62	n	ENSMUSG00000037503.13	Fam168b	chr1	protein_coding	family with sequence similarity 168, member B
known_NIR_646	chr1	34859090	34867848	-	34859090;34863136	34863101;34867848	ES	ENSMUST00000167518.8	known	1.00	31	0.0	31	0;0	n	1.00	30	0.0	30	0;0	n	1.00	60	0.0	60	0;0	n	0.96	36	1.5	36	1;2	n	0.98	57	1.0	57	1;1	n	0.88	30	4.0	30	4;4	y	0.95	48	2.5	48	3;2	y	0.97	39	1.0	39	2;0	n	1.00	25	0.0	25	0;0	n	0.96	63	2.5	63	3;2	y	1.00	33	0.0	33	0;0	n	0.97	62	2.0	62	3;1	n	ENSMUSG00000037503.13	Fam168b	chr1	protein_coding	family with sequence similarity 168, member B
known_NIR_647	chr1	36213211	36213977	-	36213291	36213977	A3SS	ENSMUST00000046875.14	known	0.00	0	64	0	64	n	0.03	1	30	1	30	n	0.03	5	178	5	178	y	0.08	5	58	5	58	y	0.00	0	162	0	162	n	0.00	0	105	0	105	n	0.01	1	87	1	87	n	0.01	1	108	1	108	n	0.02	1	40	1	40	n	0.06	5	81	5	81	y	0.03	2	57	2	57	y	0.03	2	61	2	61	y	ENSMUSG00000037470.15	Uggt1	chr1	protein_coding	UDP-glucose glycoprotein glucosyltransferase 1
known_NIR_648	chr1	36215408	36216599	-	36215408;36215880	36215857;36216599	ES	ENSMUST00000046875.14	known	0.41	22	31.5	22	34;29	y	0.25	7	20.5	7	19;22	y	0.28	44	115.0	44	105;125	y	0.28	15	39.0	15	39;39	y	0.21	29	110.5	29	109;112	y	0.11	8	68.0	8	70;66	y	0.28	17	43.5	17	40;47	y	0.14	17	101.0	17	104;98	y	0.15	5	29.0	5	27;31	y	0.23	15	50.0	15	52;48	y	0.24	10	31.5	10	29;34	y	0.39	29	45.0	29	46;44	y	ENSMUSG00000037470.15	Uggt1	chr1	protein_coding	UDP-glucose glycoprotein glucosyltransferase 1
known_NIR_649	chr1	36249145	36250478	-	36249145	36250471	A5SS	ENSMUST00000046875.14	known	0.08	2	24	2	24	y	0.00	0	14	0	14	n	0.02	2	116	2	116	y	0.00	0	46	0	46	n	0.04	4	95	4	95	y	0.03	3	83	3	83	y	0.00	0	71	0	71	n	0.00	0	97	0	97	n	0.00	0	36	0	36	n	0.00	0	54	0	54	n	0.09	3	29	3	29	y	0.00	0	45	0	45	n	ENSMUSG00000037470.15	Uggt1	chr1	protein_coding	UDP-glucose glycoprotein glucosyltransferase 1
known_NIR_650	chr1	36346917	36355290	+	36346917	36355293	A3SS	ENSMUST00000126413.8	known	1.00	2	0	2	0	n	0.50	1	1	1	1	n	0.80	28	7	28	7	y	1.00	2	0	2	0	n	1.00	4	0	4	0	n	0.71	5	2	5	2	n	0.50	3	3	3	3	n	1.00	3	0	3	0	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	1.00	2	0	2	0	n	ENSMUSG00000037447.17	Arid5a	chr1	protein_coding	AT rich interactive domain 5A (MRF1-like)
known_NIR_651	chr1	36355408	36356691	+	36355408	36356285	3pMXE	ENSMUST00000142319.8	known	0.67	2	1	2	1	n	0.00	0	2	0	2	n	0.26	8	23	8	23	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.12	1	7	1	7	n	0.10	1	9	1	9	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	ENSMUSG00000037447.17	Arid5a	chr1	protein_coding	AT rich interactive domain 5A (MRF1-like)
known_NIR_652	chr1	36355408	36356691	+	36355408;36356405	36356285;36356691	ES	ENSMUST00000126413.8	known	0.80	2	0.5	2	1;0	n	0.00	0	3.0	0	2;4	n	0.28	8	20.5	8	23;18	y	0.00	0	2.0	0	4;0	n	0.00	0	1.0	0	0;2	n	0.20	1	4.0	1	7;1	n	0.15	1	5.5	1	9;2	n	0.00	0	2.0	0	3;1	n	0.00	0	2.5	0	3;2	n	0.67	1	0.5	1	0;1	n	0.00	0	0.5	0	1;0	n	0.67	1	0.5	1	0;1	n	ENSMUSG00000037447.17	Arid5a	chr1	protein_coding	AT rich interactive domain 5A (MRF1-like)
known_NIR_653	chr1	36355408	36356691	+	36356405	36356691	5pMXE	ENSMUST00000141121.2	known	1.00	2	0	2	0	n	0.00	0	4	0	4	n	0.31	8	18	8	18	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000037447.17	Arid5a	chr1	protein_coding	AT rich interactive domain 5A (MRF1-like)
known_NIR_654	chr1	36385110;36386375	36386298;36387606	-	36385110	36387606	cassetteExon	ENSMUST00000185912.7	known	0.07	3.0	43	2;4	43	y	0.04	1.5	41	1;2	41	n	0.07	3.5	45	2;5	45	y	0.11	7.5	59	6;9	59	y	0.03	3.0	87	3;3	87	y	0.07	2.0	25	2;2	25	y	0.12	10.0	73	7;13	73	y	0.05	2.5	44	1;4	44	n	0.08	4.5	55	5;4	55	y	0.05	6.0	121	5;7	121	y	0.11	5.5	43	5;6	43	y	0.04	4.5	96	5;4	96	y	ENSMUSG00000010453.13	Kansl3	chr1	protein_coding	KAT8 regulatory NSL complex subunit 3
known_NIR_655	chr1	36404666	36406850	-	36404733	36406850	A3SS	ENSMUST00000010597.10	known	0.07	1	13	1	13	n	0.00	0	11	0	11	n	0.16	3	16	3	16	y	0.00	0	24	0	24	n	0.11	2	17	2	17	y	0.00	0	5	0	5	n	0.00	0	21	0	21	n	0.10	1	9	1	9	n	0.00	0	10	0	10	n	0.14	3	18	3	18	y	0.00	0	12	0	12	n	0.11	3	25	3	25	y	ENSMUSG00000010453.13	Kansl3	chr1	protein_coding	KAT8 regulatory NSL complex subunit 3
known_NIR_656	chr1	36404713	36406850	-	36404733	36406850	A3SS	ENSMUST00000010597.10	known	0.19	3	13	3	13	y	0.15	2	11	2	11	y	0.20	4	16	4	16	y	0.00	0	24	0	24	n	0.19	4	17	4	17	y	0.00	0	5	0	5	n	0.12	3	21	3	21	y	0.40	6	9	6	9	y	0.17	2	10	2	10	y	0.05	1	18	1	18	n	0.14	2	12	2	12	y	0.19	6	25	6	25	y	ENSMUSG00000010453.13	Kansl3	chr1	protein_coding	KAT8 regulatory NSL complex subunit 3
known_NIR_657	chr1	36404733	36406831	-	36404733	36406850	A5SS	ENSMUST00000010597.10	known	0.38	8	13	8	13	y	0.35	6	11	6	11	y	0.30	7	16	7	16	y	0.14	4	24	4	24	y	0.50	17	17	17	17	y	0.58	7	5	7	5	y	0.46	18	21	18	21	y	0.44	7	9	7	9	y	0.44	8	10	8	10	y	0.44	14	18	14	18	y	0.37	7	12	7	12	y	0.14	4	25	4	25	y	ENSMUSG00000010453.13	Kansl3	chr1	protein_coding	KAT8 regulatory NSL complex subunit 3
known_NIR_658	chr1	36463584	36463919	-	36459116	36463919	A3SS	ENSMUST00000192969.6	known	0.78	31	9	31	9	y	0.84	27	5	27	5	y	0.90	28	3	28	3	y	1.00	30	0	30	0	n	0.92	57	5	57	5	y	1.00	20	0	20	0	n	0.90	53	6	53	6	y	1.00	20	0	20	0	n	0.83	20	4	20	4	y	0.91	51	5	51	5	y	0.87	41	6	41	6	y	0.82	50	11	50	11	y	ENSMUSG00000001143.14	Lman2l	chr1	protein_coding	lectin, mannose-binding 2-like
known_NIR_659	chr1	36467542	36478690	-	36467542;36477913	36477831;36478690	ES	ENSMUST00000192969.6	known	0.17	7	35.0	7	38;32	y	0.03	1	34.0	1	29;39	n	0.00	0	34.0	0	34;34	n	0.02	1	46.5	1	51;42	n	0.00	0	50.0	0	42;58	n	0.00	0	14.5	0	11;18	n	0.02	1	52.0	1	48;56	n	0.00	0	27.0	0	28;26	n	0.03	1	36.0	1	40;32	n	0.00	0	56.5	0	60;53	n	0.00	0	38.0	0	40;36	n	0.02	1	63.5	1	53;74	n	ENSMUSG00000001143.14	Lman2l	chr1	protein_coding	lectin, mannose-binding 2-like
known_NIR_660	chr1	36467542;36468536	36468504;36477831	-	36467542	36477831	cassetteExon	ENSMUST00000192969.6	known	0.00	0.0	38	0;0	38	n	0.00	0.0	29	0;0	29	n	0.00	0.0	34	0;0	34	n	0.00	0.0	51	0;0	51	n	0.00	0.0	42	0;0	42	n	0.00	0.0	11	0;0	11	n	0.01	0.5	48	0;1	48	n	0.00	0.0	28	0;0	28	n	0.00	0.0	40	0;0	40	n	0.03	2.0	60	2;2	60	y	0.00	0.0	40	0;0	40	n	0.00	0.0	53	0;0	53	n	ENSMUSG00000001143.14	Lman2l	chr1	protein_coding	lectin, mannose-binding 2-like
known_NIR_661	chr1	36478807	36482601	-	36478807	36482572	A5SS	ENSMUST00000125304.8	known	0.05	2	37	2	37	y	0.06	2	32	2	32	y	0.00	0	39	0	39	n	0.11	5	42	5	42	y	0.08	4	49	4	49	y	0.07	2	25	2	25	y	0.07	4	55	4	55	y	0.00	0	25	0	25	n	0.04	1	23	1	23	n	0.00	0	56	0	56	n	0.00	0	44	0	44	n	0.00	0	49	0	49	n	ENSMUSG00000001143.14	Lman2l	chr1	protein_coding	lectin, mannose-binding 2-like
known_NIR_662	chr1	36560920;36563213	36563115;36564247	+	36560920	36564247	cassetteExon	ENSMUST00000001166.14	known	0.06	1.0	15	1;1	15	n	0.00	0.0	20	0;0	20	n	0.02	0.5	21	1;0	21	n	0.01	0.5	42	0;1	42	n	0.02	0.5	26	0;1	26	n	0.00	0.0	19	0;0	19	n	0.02	0.5	28	1;0	28	n	0.00	0.0	19	0;0	19	n	0.06	1.5	23	3;0	23	n	0.12	2.5	18	3;2	18	y	0.02	0.5	21	1;0	21	n	0.00	0.0	25	0;0	25	n	ENSMUSG00000001138.14	Cnnm3	chr1	protein_coding	cyclin M3
known_NIR_663	chr1	36570902	36571193	-	36570902;36571088	36570990;36571193	ES	ENSMUST00000193083.6	known	0.00	0	6.0	0	3;9	n	0.00	0	7.5	0	10;5	n	0.00	0	7.0	0	9;5	n	0.00	0	7.0	0	4;10	n	0.25	2	6.0	2	5;7	y	0.00	0	1.5	0	1;2	n	0.02	10	512.5	10	501;524	y	0.00	0	4.0	0	5;3	n	0.00	0	5.0	0	9;1	n	0.00	0	5.5	0	4;7	n	0.00	0	4.5	0	6;3	n	0.00	0	3.5	0	5;2	n	ENSMUSG00000067653.13	Ankrd23	chr1	protein_coding	ankyrin repeat domain 23
known_NIR_664	chr1	36573518	36574763	-	36573518	36575578	A5SS	ENSMUST00000193083.6	known	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.98	253	6	253	6	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	15	0	15	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	ENSMUSG00000067653.13	Ankrd23	chr1	protein_coding	ankyrin repeat domain 23
known_NIR_665	chr1	36578615	36580905	-	36578615	36580940	A5SS	ENSMUST00000207843.2	known	0.18	3	14	3	14	y	0.07	1	14	1	14	n	0.09	2	21	2	21	y	0.00	0	11	0	11	n	0.00	0	25	0	25	n	0.33	3	6	3	6	n	0.00	0	27	0	27	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.11	3	24	3	24	y	0.00	0	16	0	16	n	0.00	0	22	0	22	n	ENSMUSG00000079610.10	Ankrd39	chr1	protein_coding	ankyrin repeat domain 39
known_NIR_666	chr1	36581946	36586167	-	36581946	36585991	A5SS	ENSMUST00000207843.2	known	0.50	5	5	5	5	y	0.33	3	6	3	6	n	0.83	10	2	10	2	y	0.50	2	2	2	2	n	0.38	5	8	5	8	y	0.80	12	3	12	3	y	0.69	9	4	9	4	y	0.50	5	5	5	5	y	0.86	6	1	6	1	n	0.75	9	3	9	3	y	0.62	5	3	5	3	n	0.58	7	5	7	5	y	ENSMUSG00000079610.10	Ankrd39	chr1	protein_coding	ankyrin repeat domain 39
known_NIR_667	chr1	36595158	36597097	-	36595161	36597097	A3SS	ENSMUST00000191677.6	known	-	-	-	-	-	-	1.00	2	0	2	0	n	0.30	3	7	3	7	y	1.00	1	0	1	0	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	4	0	4	0	n	0.00	0	1	0	1	n	0.75	3	1	3	1	n	1.00	2	0	2	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026121.14	Sema4c	chr1	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C
known_NIR_668	chr1	36730770	36731339	+	36730770	36731292	A3SS	ENSMUST00000081180.7	known	0.00	0	992	0	992	n	0.00	0	1167	0	1167	n	0.00	0	1237	0	1237	n	0.00	2	1163	2	1163	y	0.00	0	1308	0	1308	n	0.00	1	808	1	808	n	0.00	5	1551	5	1551	y	0.00	0	669	0	669	n	0.00	0	1104	0	1104	n	0.00	2	1520	2	1520	y	0.00	0	1397	0	1397	n	0.00	5	1499	5	1499	y	ENSMUSG00000061518.12	Cox5b	chr1	protein_coding	cytochrome c oxidase subunit 5B
known_NIR_669	chr1	36731365	36731532	+	36731365	36731512	A3SS	ENSMUST00000081180.7	known	1.00	1142	5	1142	5	y	1.00	1334	0	1334	0	n	1.00	1457	0	1457	0	n	1.00	1248	2	1248	2	y	1.00	1434	0	1434	0	n	1.00	943	2	943	2	y	1.00	1813	2	1813	2	y	1.00	769	0	769	0	n	1.00	1256	1	1256	1	n	1.00	1843	1	1843	1	n	1.00	1729	0	1729	0	n	1.00	1752	0	1752	0	n	ENSMUSG00000061518.12	Cox5b	chr1	protein_coding	cytochrome c oxidase subunit 5B
known_NIR_670	chr1	36731365	36732278	+	36731365	36731532	3pMXE	ENSMUST00000191790.6	known	0.01	8	1142	8	1142	y	0.00	2	1334	2	1334	y	0.01	18	1457	18	1457	y	0.00	4	1248	4	1248	y	0.01	10	1434	10	1434	y	0.01	9	943	9	943	y	0.00	2	1813	2	1813	y	0.00	1	769	1	769	n	0.00	6	1256	6	1256	y	0.00	6	1843	6	1843	y	0.00	4	1729	4	1729	y	0.00	3	1752	3	1752	y	ENSMUSG00000061518.12	Cox5b	chr1	protein_coding	cytochrome c oxidase subunit 5B
known_NIR_671	chr1	36731365	36732278	+	36731365;36731631	36731512;36732278	ES	ENSMUST00000081180.7	known	0.01	8	649.0	8	5;1293	y	0.00	2	687.0	2	0;1374	n	0.02	18	737.5	18	0;1475	n	0.01	4	682.5	4	2;1363	y	0.01	10	771.0	10	0;1542	n	0.02	9	465.0	9	2;928	y	0.00	2	969.0	2	2;1936	y	0.00	1	433.5	1	0;867	n	0.01	6	652.5	6	1;1304	n	0.01	6	949.0	6	1;1897	n	0.00	4	1001.0	4	0;2002	n	0.00	3	919.0	3	0;1838	n	ENSMUSG00000061518.12	Cox5b	chr1	protein_coding	cytochrome c oxidase subunit 5B
known_NIR_672	chr1	36731365	36732278	+	36731365;36731631	36731532;36732278	ES	ENSMUST00000193210.6	known	0.01	8	1217.5	8	1142;1293	y	0.00	2	1354.0	2	1334;1374	y	0.01	18	1466.0	18	1457;1475	y	0.00	4	1305.5	4	1248;1363	y	0.01	10	1488.0	10	1434;1542	y	0.01	9	935.5	9	943;928	y	0.00	2	1874.5	2	1813;1936	y	0.00	1	818.0	1	769;867	n	0.00	6	1280.0	6	1256;1304	y	0.00	6	1870.0	6	1843;1897	y	0.00	4	1865.5	4	1729;2002	y	0.00	3	1795.0	3	1752;1838	y	ENSMUSG00000061518.12	Cox5b	chr1	protein_coding	cytochrome c oxidase subunit 5B
known_NIR_673	chr1	36741681	36745951	-	36741681	36748887	A5SS	ENSMUST00000162684.3	known	1.00	98	0	98	0	n	1.00	100	0	100	0	n	1.00	203	0	203	0	n	0.98	138	3	138	3	y	1.00	146	0	146	0	n	0.99	106	1	106	1	n	0.98	178	4	178	4	y	1.00	79	0	79	0	n	1.00	93	0	93	0	n	0.99	206	2	206	2	y	1.00	100	0	100	0	n	1.00	168	0	168	0	n	ENSMUSG00000037351.10	Actr1b	chr1	protein_coding	ARP1 actin-related protein 1B, centractin beta
known_NIR_674	chr1	36745729	36745951	-	36741681	36745951	A3SS	ENSMUST00000043951.10	known	0.00	0	98	0	98	n	0.00	0	100	0	100	n	0.00	0	203	0	203	n	0.01	2	138	2	138	y	0.01	1	146	1	146	n	0.01	1	106	1	106	n	0.01	1	178	1	178	n	0.00	0	79	0	79	n	0.00	0	93	0	93	n	0.00	0	206	0	206	n	0.01	1	100	1	100	n	0.00	0	168	0	168	n	ENSMUSG00000037351.10	Actr1b	chr1	protein_coding	ARP1 actin-related protein 1B, centractin beta
known_NIR_675	chr1	36747336	36748648	-	36747336	36748887	A5SS	ENSMUST00000043951.10	known	0.00	0	110	0	110	n	0.00	0	88	0	88	n	0.00	0	175	0	175	n	0.00	0	112	0	112	n	0.01	1	134	1	134	n	0.00	0	100	0	100	n	0.00	0	123	0	123	n	0.00	0	85	0	85	n	0.00	0	82	0	82	n	0.03	4	135	4	135	y	0.00	0	108	0	108	n	0.01	1	133	1	133	n	ENSMUSG00000037351.10	Actr1b	chr1	protein_coding	ARP1 actin-related protein 1B, centractin beta
known_NIR_676	chr1	36747336	36748887	-	36741681	36748887	A3SS	ENSMUST00000162684.3	known	1.00	110	0	110	0	n	1.00	88	0	88	0	n	1.00	175	0	175	0	n	0.97	112	3	112	3	y	1.00	134	0	134	0	n	0.99	100	1	100	1	n	0.97	123	4	123	4	y	1.00	85	0	85	0	n	1.00	82	0	82	0	n	0.99	135	2	135	2	y	1.00	108	0	108	0	n	1.00	133	0	133	0	n	ENSMUSG00000037351.10	Actr1b	chr1	protein_coding	ARP1 actin-related protein 1B, centractin beta
known_NIR_677	chr1	36853498	36854536	-	36851789	36854536	A3SS	ENSMUST00000027290.12	known	0.04	1	25	1	25	n	0.29	4	10	4	10	y	0.09	4	43	4	43	y	0.09	2	20	2	20	y	0.12	5	37	5	37	y	0.10	1	9	1	9	n	0.09	4	43	4	43	y	0.00	0	27	0	27	n	0.19	3	13	3	13	y	0.00	0	38	0	38	n	0.18	3	14	3	14	y	0.00	0	37	0	37	n	ENSMUSG00000026116.12	Tmem131	chr1	protein_coding	transmembrane protein 131
known_NIR_678	chr1	37411500	37413356	+	37411500	37413353	A3SS	ENSMUST00000027287.11	known	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.12	2	14	2	14	y	0.33	2	4	2	4	n	0.12	1	7	1	7	n	0.18	2	9	2	9	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.50	2	2	2	2	n	0.00	0	6	0	6	n	ENSMUSG00000026113.18	Inpp4a	chr1	protein_coding	inositol polyphosphate-4-phosphatase, type I
known_NIR_679	chr1	37411500	37416659	+	37411500;37413370	37413353;37416659	ES	ENSMUST00000027287.11	known	0.33	3	6.0	3	6;6	y	0.40	3	4.5	3	5;4	y	0.76	21	6.5	21	6;7	y	0.65	10	5.5	10	5;6	y	0.38	9	14.5	9	14;15	y	0.64	8	4.5	8	4;5	y	0.64	14	8.0	14	7;9	y	0.46	9	10.5	9	9;12	y	0.84	8	1.5	8	2;1	n	0.80	18	4.5	18	4;5	y	0.62	5	3.0	5	2;4	y	0.79	23	6.0	23	6;6	y	ENSMUSG00000026113.18	Inpp4a	chr1	protein_coding	inositol polyphosphate-4-phosphatase, type I
known_NIR_680	chr1	37411500;37413370	37413356;37416659	+	37411500	37416659	cassetteExon	ENSMUST00000140264.8	known	0.50	3.0	3	0;6	3	n	0.40	2.0	3	0;4	3	n	0.16	4.0	21	1;7	21	n	0.23	3.0	10	0;6	10	n	0.49	8.5	9	2;15	9	y	0.30	3.5	8	2;5	8	y	0.26	5.0	14	1;9	14	n	0.44	7.0	9	2;12	9	y	0.06	0.5	8	0;1	8	n	0.12	2.5	18	0;5	18	n	0.38	3.0	5	2;4	5	y	0.12	3.0	23	0;6	23	n	ENSMUSG00000026113.18	Inpp4a	chr1	protein_coding	inositol polyphosphate-4-phosphatase, type I
known_NIR_681	chr1	37419141	37426779	+	37419141;37422452	37422420;37426779	ES	ENSMUST00000027287.11	known	0.60	3	2.0	3	0;4	n	0.91	5	0.5	5	1;0	n	0.40	9	13.5	9	9;18	y	0.50	3	3.0	3	0;6	n	0.54	7	6.0	7	1;11	n	0.80	8	2.0	8	0;4	n	0.62	10	6.0	10	7;5	y	0.56	7	5.5	7	4;7	y	0.67	2	1.0	2	0;2	n	0.00	0	5.0	0	4;6	n	1.00	2	0.0	2	0;0	n	0.64	9	5.0	9	2;8	y	ENSMUSG00000026113.18	Inpp4a	chr1	protein_coding	inositol polyphosphate-4-phosphatase, type I
known_NIR_682	chr1	37419141	37426779	+	37422452	37426779	A5SS&ES	ENSMUST00000132401.8	known	0.43	3	4	3	4	n	1.00	5	0	5	0	n	0.33	9	18	9	18	y	0.33	3	6	3	6	n	0.39	7	11	7	11	y	0.67	8	4	8	4	y	0.67	10	5	10	5	y	0.50	7	7	7	7	y	0.50	2	2	2	2	n	0.00	0	6	0	6	n	1.00	2	0	2	0	n	0.53	9	8	9	8	y	ENSMUSG00000026113.18	Inpp4a	chr1	protein_coding	inositol polyphosphate-4-phosphatase, type I
known_NIR_683	chr1	37419258	37422420	+	37419141	37422420	A5SS	ENSMUST00000027287.11	known	1.00	2	0	2	0	n	0.00	0	1	0	1	n	0.40	6	9	6	9	y	1.00	1	0	1	0	n	0.67	2	1	2	1	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.33	2	4	2	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000026113.18	Inpp4a	chr1	protein_coding	inositol polyphosphate-4-phosphatase, type I
known_NIR_684	chr1	37438001	37442530	+	37438001	37447208	A3SS	ENSMUST00000027287.11	known	0.00	0	19	0	19	n	0.00	0	12	0	12	n	0.00	0	24	0	24	n	0.00	0	6	0	6	n	0.00	0	22	0	22	n	0.00	0	13	0	13	n	0.10	2	19	2	19	y	0.00	0	17	0	17	n	0.00	0	19	0	19	n	0.00	0	22	0	22	n	0.00	0	13	0	13	n	0.00	0	13	0	13	n	ENSMUSG00000026113.18	Inpp4a	chr1	protein_coding	inositol polyphosphate-4-phosphatase, type I
known_NIR_685	chr1	37469363	37470378	+	37469363	37470374	A3SS	ENSMUST00000114925.10	known	0.04	2	47	2	47	y	0.05	2	42	2	42	y	0.04	2	52	2	52	y	0.00	0	53	0	53	n	0.03	2	62	2	62	y	0.06	2	32	2	32	y	0.04	3	69	3	69	y	0.09	3	29	3	29	y	0.08	3	34	3	34	y	0.03	2	64	2	64	y	0.09	3	30	3	30	y	0.03	1	37	1	37	n	ENSMUSG00000026111.16	Unc50	chr1	protein_coding	unc-50 homolog
known_NIR_686	chr1	37469363	37470378	+	37469574	37470378	A5SS	ENSMUST00000193979.6	known	0.40	2	3	2	3	n	0.40	2	3	2	3	n	0.20	2	8	2	8	y	-	-	-	-	-	-	0.22	2	7	2	7	n	0.50	2	2	2	2	n	0.33	3	6	3	6	n	0.43	3	4	3	4	n	0.60	3	2	3	2	n	0.40	2	3	2	3	n	1.00	3	0	3	0	n	1.00	1	0	1	0	n	ENSMUSG00000026111.16	Unc50	chr1	protein_coding	unc-50 homolog
known_NIR_687	chr1	37469418	37470374	+	37469363	37470374	A5SS	ENSMUST00000114925.10	known	0.13	7	47	7	47	y	0.05	2	42	2	42	y	0.16	10	52	10	52	y	0.00	0	53	0	53	n	0.02	1	62	1	62	n	0.00	0	32	0	32	n	0.05	4	69	4	69	y	0.00	0	29	0	29	n	0.06	2	34	2	34	y	0.02	1	64	1	64	n	0.12	4	30	4	30	y	0.00	0	37	0	37	n	ENSMUSG00000026111.16	Unc50	chr1	protein_coding	unc-50 homolog
known_NIR_688	chr1	37469418	37470374	+	37469574	37470374	A5SS	ENSMUST00000027285.13	known	0.12	7	50	7	50	y	0.07	2	26	2	26	y	0.14	10	61	10	61	y	0.00	0	39	0	39	n	0.02	1	53	1	53	n	0.00	0	33	0	33	n	0.07	4	54	4	54	y	0.00	0	46	0	46	n	0.06	2	31	2	31	y	0.02	1	65	1	65	n	0.12	4	30	4	30	y	0.00	0	55	0	55	n	ENSMUSG00000026111.16	Unc50	chr1	protein_coding	unc-50 homolog
known_NIR_689	chr1	37469508	37470374	+	37469363	37470374	A5SS	ENSMUST00000114925.10	known	0.00	0	47	0	47	n	0.09	4	42	4	42	y	0.10	6	52	6	52	y	0.09	5	53	5	53	y	0.07	5	62	5	62	y	0.11	4	32	4	32	y	0.08	6	69	6	69	y	0.24	9	29	9	29	y	0.06	2	34	2	34	y	0.06	4	64	4	64	y	0.12	4	30	4	30	y	0.21	10	37	10	37	y	ENSMUSG00000026111.16	Unc50	chr1	protein_coding	unc-50 homolog
known_NIR_690	chr1	37469508	37470374	+	37469418	37470374	A5SS	ENSMUST00000144617.8	known	0.00	0	7	0	7	n	0.67	4	2	4	2	n	0.38	6	10	6	10	y	1.00	5	0	5	0	n	0.83	5	1	5	1	n	1.00	4	0	4	0	n	0.60	6	4	6	4	y	1.00	9	0	9	0	n	0.50	2	2	2	2	n	0.80	4	1	4	1	n	0.50	4	4	4	4	n	1.00	10	0	10	0	n	ENSMUSG00000026111.16	Unc50	chr1	protein_coding	unc-50 homolog
known_NIR_691	chr1	37469508	37470374	+	37469574	37470374	A5SS	ENSMUST00000027285.13	known	0.00	0	50	0	50	n	0.13	4	26	4	26	y	0.09	6	61	6	61	y	0.11	5	39	5	39	y	0.09	5	53	5	53	y	0.11	4	33	4	33	y	0.10	6	54	6	54	y	0.16	9	46	9	46	y	0.06	2	31	2	31	y	0.06	4	65	4	65	y	0.12	4	30	4	30	y	0.15	10	55	10	55	y	ENSMUSG00000026111.16	Unc50	chr1	protein_coding	unc-50 homolog
known_NIR_692	chr1	37469574	37470374	+	37469363	37470374	A5SS	ENSMUST00000114925.10	known	0.52	50	47	50	47	y	0.38	26	42	26	42	y	0.54	61	52	61	52	y	0.42	39	53	39	53	y	0.46	53	62	53	62	y	0.51	33	32	33	32	y	0.44	54	69	54	69	y	0.61	46	29	46	29	y	0.48	31	34	31	34	y	0.50	65	64	65	64	y	0.50	30	30	30	30	y	0.60	55	37	55	37	y	ENSMUSG00000026111.16	Unc50	chr1	protein_coding	unc-50 homolog
known_NIR_693	chr1	37469574	37470378	+	37469574	37470374	A3SS	ENSMUST00000027285.13	known	0.06	3	50	3	50	y	0.10	3	26	3	26	y	0.12	8	61	8	61	y	0.00	0	39	0	39	n	0.12	7	53	7	53	y	0.06	2	33	2	33	y	0.10	6	54	6	54	y	0.08	4	46	4	46	y	0.06	2	31	2	31	y	0.04	3	65	3	65	y	0.00	0	30	0	30	n	0.00	0	55	0	55	n	ENSMUSG00000026111.16	Unc50	chr1	protein_coding	unc-50 homolog
known_NIR_694	chr1	37911669	37913945	+	37911406	37913945	A5SS	ENSMUST00000041621.5	known	0.54	7	6	7	6	y	0.80	8	2	8	2	y	0.25	2	6	2	6	n	0.43	3	4	3	4	n	0.77	10	3	10	3	y	0.80	4	1	4	1	n	0.50	6	6	6	6	y	0.88	7	1	7	1	n	0.50	6	6	6	6	y	0.71	17	7	17	7	y	0.45	10	12	10	12	y	0.74	14	5	14	5	y	ENSMUSG00000037216.6	Lipt1	chr1	protein_coding	lipoyltransferase 1
known_NIR_695	chr1	37911726	37913945	+	37911406	37913945	A5SS	ENSMUST00000041621.5	known	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.20	1	4	1	4	n	0.40	2	3	2	3	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.50	1	1	1	1	n	0.00	0	6	0	6	n	0.30	3	7	3	7	y	0.00	0	12	0	12	n	0.00	0	5	0	5	n	ENSMUSG00000037216.6	Lipt1	chr1	protein_coding	lipoyltransferase 1
known_NIR_696	chr1	37911726	37913945	+	37911669	37913945	A5SS	ENSMUST00000142670.2	known	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.17	2	10	2	10	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.12	1	7	1	7	n	0.00	0	6	0	6	n	0.15	3	17	3	17	y	0.00	0	10	0	10	n	0.00	0	14	0	14	n	ENSMUSG00000037216.6	Lipt1	chr1	protein_coding	lipoyltransferase 1
known_NIR_697	chr1	37929665	37933020	+	37929665	37932024	3pMXE	ENSMUST00000161694.2	known	0.37	54	91	54	91	y	0.31	45	100	45	100	y	0.25	37	113	37	113	y	0.38	51	84	51	84	y	0.32	56	119	56	119	y	0.16	15	79	15	79	y	0.32	54	116	54	116	y	0.33	26	53	26	53	y	0.34	46	89	46	89	y	0.35	69	127	69	127	y	0.36	65	118	65	118	y	0.42	63	88	63	88	y	ENSMUSG00000026087.12	Mrpl30	chr1	protein_coding	mitochondrial ribosomal protein L30
known_NIR_698	chr1	37929665	37933020	+	37929665;37932104	37932024;37933020	ES	ENSMUST00000027256.12	known	0.29	54	131.0	54	91;171	y	0.22	45	155.5	45	100;211	y	0.18	37	168.0	37	113;223	y	0.28	51	133.0	51	84;182	y	0.22	56	202.0	56	119;285	y	0.11	15	116.5	15	79;154	y	0.25	54	166.0	54	116;216	y	0.21	26	97.0	26	53;141	y	0.26	46	131.5	46	89;174	y	0.27	69	182.5	69	127;238	y	0.26	65	181.0	65	118;244	y	0.31	63	140.0	63	88;192	y	ENSMUSG00000026087.12	Mrpl30	chr1	protein_coding	mitochondrial ribosomal protein L30
known_NIR_699	chr1	37929665	37933020	+	37932104	37933020	A5SS&ES	ENSMUST00000160082.3	known	0.24	54	171	54	171	y	0.18	45	211	45	211	y	0.14	37	223	37	223	y	0.22	51	182	51	182	y	0.16	56	285	56	285	y	0.09	15	154	15	154	y	0.20	54	216	54	216	y	0.16	26	141	26	141	y	0.21	46	174	46	174	y	0.22	69	238	69	238	y	0.21	65	244	65	244	y	0.25	63	192	63	192	y	ENSMUSG00000026087.12	Mrpl30	chr1	protein_coding	mitochondrial ribosomal protein L30
known_NIR_700	chr1	37931253	37932024	+	37929665	37932024	A5SS	ENSMUST00000027256.12	known	0.01	1	91	1	91	n	0.05	5	100	5	100	y	0.01	1	113	1	113	n	0.00	0	84	0	84	n	0.02	3	119	3	119	y	0.00	0	79	0	79	n	0.02	2	116	2	116	y	0.05	3	53	3	53	y	0.01	1	89	1	89	n	0.03	4	127	4	127	y	0.02	3	118	3	118	y	0.01	1	88	1	88	n	ENSMUSG00000026087.12	Mrpl30	chr1	protein_coding	mitochondrial ribosomal protein L30
known_NIR_701	chr1	38026860	38033073	-	38026860;38029538	38029284;38033073	ES	ENSMUST00000162031.8	known	0.00	0	177.5	0	207;148	n	0.01	1	185.5	1	199;172	n	0.00	0	236.0	0	241;231	n	0.01	1	188.5	1	210;167	n	0.00	0	213.0	0	246;180	n	0.02	2	94.0	2	97;91	y	0.00	0	219.5	0	258;181	n	0.00	0	107.5	0	107;108	n	0.01	1	171.0	1	188;154	n	0.01	3	220.5	3	251;190	y	0.01	1	190.5	1	206;175	n	0.00	0	207.5	0	219;196	n	ENSMUSG00000058407.13	Txndc9	chr1	protein_coding	thioredoxin domain containing 9
known_NIR_702	chr1	38026860	38033073	-	38029538	38033073	A3SS	ENSMUST00000193832.6	known	0.00	0	148	0	148	n	0.01	1	172	1	172	n	0.00	0	231	0	231	n	0.01	1	167	1	167	n	0.00	0	180	0	180	n	0.02	2	91	2	91	y	0.00	0	181	0	181	n	0.00	0	108	0	108	n	0.01	1	154	1	154	n	0.02	3	190	3	190	y	0.01	1	175	1	175	n	0.00	0	196	0	196	n	ENSMUSG00000058407.13	Txndc9	chr1	protein_coding	thioredoxin domain containing 9
known_NIR_703	chr1	38034922	38035974	-	38034922	38036190	A5SS	ENSMUST00000162031.8	known	0.31	31	69	31	69	y	0.27	21	58	21	58	y	0.31	35	77	35	77	y	0.23	31	106	31	106	y	0.22	23	83	23	83	y	0.27	14	37	14	37	y	0.24	26	83	26	83	y	0.26	13	37	13	37	y	0.24	17	53	17	53	y	0.21	24	92	24	92	y	0.11	10	78	10	78	y	0.16	17	87	17	87	y	ENSMUSG00000058407.13	Txndc9	chr1	protein_coding	thioredoxin domain containing 9
known_NIR_704	chr1	38034922	38035974	-	38034922	38036245	A5SS	ENSMUST00000193832.6	known	0.70	31	13	31	13	y	0.57	21	16	21	16	y	0.64	35	20	35	20	y	0.57	31	23	31	23	y	0.45	23	28	23	28	y	0.44	14	18	14	18	y	0.68	26	12	26	12	y	0.62	13	8	13	8	y	0.42	17	23	17	23	y	0.48	24	26	24	26	y	0.43	10	13	10	13	y	0.59	17	12	17	12	y	ENSMUSG00000058407.13	Txndc9	chr1	protein_coding	thioredoxin domain containing 9
known_NIR_705	chr1	38034922	38036245	-	38034922	38036190	A5SS	ENSMUST00000162031.8	known	0.16	13	69	13	69	y	0.22	16	58	16	58	y	0.21	20	77	20	77	y	0.18	23	106	23	106	y	0.25	28	83	28	83	y	0.33	18	37	18	37	y	0.13	12	83	12	83	y	0.18	8	37	8	37	y	0.30	23	53	23	53	y	0.22	26	92	26	92	y	0.14	13	78	13	78	y	0.12	12	87	12	87	y	ENSMUSG00000058407.13	Txndc9	chr1	protein_coding	thioredoxin domain containing 9
known_NIR_706	chr1	38113524	38118371	-	38114104	38118371	A3SS	ENSMUST00000194650.6	known	0.29	2	5	2	5	n	0.60	6	4	6	4	y	0.40	6	9	6	9	y	0.40	6	9	6	9	y	0.56	9	7	9	7	y	1.00	2	0	2	0	n	0.73	8	3	8	3	y	0.71	5	2	5	2	n	0.67	6	3	6	3	n	0.67	12	6	12	6	y	0.40	4	6	4	6	y	0.61	11	7	11	7	y	ENSMUSG00000026082.12	Rev1	chr1	protein_coding	REV1, DNA directed polymerase
known_NIR_707	chr1	38113524;38114104	38113980;38118371	-	38113524	38118371	cassetteExon	ENSMUST00000027251.12	known	0.71	5.0	2	5;5	2	y	0.25	2.0	6	0;4	6	n	0.45	5.0	6	1;9	6	n	0.43	4.5	6	0;9	6	n	0.36	5.0	9	3;7	9	y	0.00	0.0	2	0;0	2	n	0.16	1.5	8	0;3	8	n	0.17	1.0	5	0;2	5	n	0.29	2.5	6	2;3	6	y	0.29	5.0	12	4;6	12	y	0.47	3.5	4	1;6	4	n	0.29	4.5	11	2;7	11	y	ENSMUSG00000026082.12	Rev1	chr1	protein_coding	REV1, DNA directed polymerase
known_NIR_708	chr1	38118479	38122785	-	38118479	38120240	5pMXE	ENSMUST00000192697.2	known	0.75	9	3	9	3	y	0.82	9	2	9	2	y	1.00	4	0	4	0	n	0.67	6	3	6	3	n	0.79	11	3	11	3	y	0.00	0	1	0	1	n	0.73	8	3	8	3	y	0.33	1	2	1	2	n	1.00	8	0	8	0	n	0.88	7	1	7	1	n	0.71	5	2	5	2	n	0.93	14	1	14	1	n	ENSMUSG00000026082.12	Rev1	chr1	protein_coding	REV1, DNA directed polymerase
known_NIR_709	chr1	38118479	38122785	-	38120439	38122785	A3SS&ES	ENSMUST00000193472.2	known	0.64	9	5	9	5	y	0.60	9	6	9	6	y	0.33	4	8	4	8	y	0.43	6	8	6	8	y	0.73	11	4	11	4	y	0.00	0	1	0	1	n	0.57	8	6	8	6	y	1.00	1	0	1	0	n	0.73	8	3	8	3	y	0.64	7	4	7	4	y	0.33	5	10	5	10	y	0.82	14	3	14	3	y	ENSMUSG00000026082.12	Rev1	chr1	protein_coding	REV1, DNA directed polymerase
known_NIR_710	chr1	38118479;38120439	38120240;38122785	-	38118479	38122785	cassetteExon	ENSMUST00000027251.12	known	0.31	4.0	9	3;5	9	y	0.31	4.0	9	2;6	9	y	0.50	4.0	4	0;8	4	n	0.48	5.5	6	3;8	6	y	0.24	3.5	11	3;4	11	y	1.00	1.0	0	1;1	0	n	0.36	4.5	8	3;6	8	y	0.50	1.0	1	2;0	1	n	0.16	1.5	8	0;3	8	n	0.26	2.5	7	1;4	7	n	0.55	6.0	5	2;10	5	y	0.12	2.0	14	1;3	14	n	ENSMUSG00000026082.12	Rev1	chr1	protein_coding	REV1, DNA directed polymerase
known_NIR_711	chr1	38147548	38168543	-	38147548	38167333	5pMXE	ENSMUST00000193697.6	known	0.71	5	2	5	2	n	1.00	4	0	4	0	n	1.00	7	0	7	0	n	1.00	7	0	7	0	n	0.80	8	2	8	2	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	6	0	6	0	n	1.00	11	0	11	0	n	1.00	10	0	10	0	n	0.83	10	2	10	2	y	1.00	5	0	5	0	n	ENSMUSG00000026082.12	Rev1	chr1	protein_coding	REV1, DNA directed polymerase
known_NIR_712	chr1	39027118	39030327	+	39026930	39030327	A5SS	ENSMUST00000027247.11	known	0.00	0	27	0	27	n	0.00	0	26	0	26	n	0.00	0	54	0	54	n	0.06	2	32	2	32	y	0.00	0	35	0	35	n	0.00	0	23	0	23	n	0.00	0	48	0	48	n	0.00	0	31	0	31	n	0.00	0	22	0	22	n	0.00	0	46	0	46	n	0.00	0	23	0	23	n	0.00	0	50	0	50	n	ENSMUSG00000026078.11	Pdcl3	chr1	protein_coding	phosducin-like 3
known_NIR_713	chr1	39407087	39407230	+	39407015	39407230	A5SS	ENSMUST00000086535.12	known	0.03	28	989	28	989	y	0.02	19	1025	19	1025	y	0.03	33	1246	33	1246	y	0.03	22	779	22	779	y	0.02	22	1291	22	1291	y	0.03	21	718	21	718	y	0.01	19	1439	19	1439	y	0.03	26	724	26	724	y	0.02	21	967	21	967	y	0.03	36	1301	36	1301	y	0.02	26	1149	26	1149	y	0.02	20	1084	20	1084	y	ENSMUSG00000073702.12	Rpl31	chr1	protein_coding	ribosomal protein L31
known_NIR_714	chr1	39594751	39599774	-	39594751	39597396	5pMXE	ENSMUST00000153381.2	known	0.03	6	216	6	216	y	0.01	2	146	2	146	y	0.00	0	303	0	303	n	0.03	8	252	8	252	y	0.01	4	361	4	361	y	0.01	2	241	2	241	y	0.02	6	354	6	354	y	0.03	5	178	5	178	y	0.01	2	154	2	154	y	0.01	2	331	2	331	y	0.01	3	200	3	200	y	0.02	5	294	5	294	y	ENSMUSG00000048234.14	Rnf149	chr1	protein_coding	ring finger protein 149
known_NIR_715	chr1	39594751	39599774	-	39594751;39597492	39597396;39599774	ES	ENSMUST00000062525.11	known	0.03	6	196.5	6	216;177	y	0.01	2	138.0	2	146;130	y	0.00	0	276.5	0	303;250	n	0.03	8	240.0	8	252;228	y	0.01	4	324.0	4	361;287	y	0.01	2	212.5	2	241;184	y	0.02	6	322.0	6	354;290	y	0.03	5	181.5	5	178;185	y	0.01	2	163.5	2	154;173	y	0.01	2	281.5	2	331;232	y	0.02	3	184.5	3	200;169	y	0.02	5	260.0	5	294;226	y	ENSMUSG00000048234.14	Rnf149	chr1	protein_coding	ring finger protein 149
known_NIR_716	chr1	39604413	39616236	-	39604413	39615908	A5SS	ENSMUST00000062525.11	known	0.00	0	139	0	139	n	0.00	0	116	0	116	n	0.01	2	257	2	257	y	0.01	3	307	3	307	y	0.01	4	284	4	284	y	0.01	3	214	3	214	y	0.00	1	254	1	254	n	0.00	0	175	0	175	n	0.00	0	119	0	119	n	0.01	3	206	3	206	y	0.03	3	108	3	108	y	0.00	0	208	0	208	n	ENSMUSG00000048234.14	Rnf149	chr1	protein_coding	ring finger protein 149
known_NIR_717	chr1	39604413	39616413	-	39604413	39615908	A5SS	ENSMUST00000062525.11	known	0.01	2	139	2	139	y	0.00	0	116	0	116	n	0.01	3	257	3	257	y	0.00	0	307	0	307	n	0.00	0	284	0	284	n	0.00	0	214	0	214	n	0.00	0	254	0	254	n	0.00	0	175	0	175	n	0.00	0	119	0	119	n	0.00	0	206	0	206	n	0.00	0	108	0	108	n	0.01	2	208	2	208	y	ENSMUSG00000048234.14	Rnf149	chr1	protein_coding	ring finger protein 149
known_NIR_718	chr1	40039134	40039784	+	40039134	40039691	A3SS	ENSMUST00000168431.7	known	-	-	-	-	-	-	0.50	5	5	5	5	y	0.71	10	4	10	4	y	1.00	1	0	1	0	n	0.36	5	9	5	9	y	0.17	1	5	1	5	n	0.50	4	4	4	4	n	0.17	1	5	1	5	n	0.20	1	4	1	4	n	0.43	3	4	3	4	n	0.50	3	3	3	3	n	0.00	0	1	0	1	n	ENSMUSG00000026074.16	Map4k4	chr1	protein_coding	mitogen-activated protein kinase kinase kinase kinase 4
known_NIR_719	chr1	40044073	40045831	+	40044073	40045834	A3SS	ENSMUST00000168431.7	known	1.00	3	0	3	0	n	0.50	1	1	1	1	n	0.81	17	4	17	4	y	1.00	2	0	2	0	n	0.64	7	4	7	4	y	1.00	3	0	3	0	n	0.75	6	2	6	2	n	1.00	2	0	2	0	n	1.00	4	0	4	0	n	1.00	7	0	7	0	n	1.00	3	0	3	0	n	0.86	6	1	6	1	n	ENSMUSG00000026074.16	Map4k4	chr1	protein_coding	mitogen-activated protein kinase kinase kinase kinase 4
known_NIR_720	chr1	40046690;40047499	40047491;40048848	+	40046690	40048848	cassetteExon	ENSMUST00000168431.7	known	0.69	4.5	2	4;5	2	y	1.00	1.0	0	1;1	0	n	0.51	10.5	10	9;12	10	y	0.50	2.0	2	1;3	2	n	0.37	3.5	6	4;3	6	y	0.58	7.0	5	8;6	5	y	0.65	11.0	6	10;12	6	y	0.00	0.0	5	0;0	5	n	0.33	0.5	1	1;0	1	n	0.47	3.5	4	4;3	4	y	0.50	2.0	2	2;2	2	n	0.25	2.0	6	2;2	6	y	ENSMUSG00000026074.16	Map4k4	chr1	protein_coding	mitogen-activated protein kinase kinase kinase kinase 4
known_NIR_721	chr1	40049837;40051001	40050810;40053266	+	40049837	40053266	cassetteExon	ENSMUST00000168431.7	known	0.56	2.5	2	4;1	2	n	0.80	4.0	1	4;4	1	n	0.60	19.5	13	20;19	13	y	0.43	3.0	4	3;3	4	y	0.60	6.0	4	4;8	4	y	0.52	5.5	5	5;6	5	y	0.60	7.5	5	5;10	5	y	0.63	8.5	5	6;11	5	y	1.00	3.5	0	4;3	0	n	0.41	7.0	10	5;9	10	y	0.50	4.0	4	4;4	4	y	0.77	10.0	3	9;11	3	y	ENSMUSG00000026074.16	Map4k4	chr1	protein_coding	mitogen-activated protein kinase kinase kinase kinase 4
known_NIR_722	chr1	40306041	40321393	+	40264466	40321393	A5SS	ENSMUST00000027241.11	known	0.00	0	13	0	13	n	0.00	0	19	0	19	n	0.00	0	173	0	173	n	0.00	0	32	0	32	n	0.06	4	58	4	58	y	0.00	0	69	0	69	n	0.00	0	51	0	51	n	0.00	0	60	0	60	n	0.00	0	13	0	13	n	0.00	0	33	0	33	n	0.00	0	16	0	16	n	0.14	2	12	2	12	y	ENSMUSG00000026072.13	Il1r1	chr1	protein_coding	interleukin 1 receptor, type I
known_NIR_723	chr1	40820719	40823537	-	40820750	40823537	A3SS	ENSMUST00000039672.6	known	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.00	0	9	0	9	n	0.27	3	8	3	8	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.67	4	2	4	2	n	0.12	1	7	1	7	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000041945.13	Mfsd9	chr1	protein_coding	major facilitator superfamily domain containing 9
known_NIR_724	chr1	42937768	42938513	+	42937768	42938601	A3SS	ENSMUST00000057208.13	known	0.04	3	66	3	66	y	0.00	0	75	0	75	n	0.00	0	72	0	72	n	0.00	0	71	0	71	n	0.00	0	71	0	71	n	0.00	0	37	0	37	n	0.02	2	104	2	104	y	0.03	1	35	1	35	n	0.01	1	72	1	72	n	0.00	0	109	0	109	n	0.04	3	69	3	69	y	0.00	0	87	0	87	n	ENSMUSG00000060679.15	Mrps9	chr1	protein_coding	mitochondrial ribosomal protein S9
known_NIR_725	chr1	43110815	43131541	-	43110815	43114411	A5SS&ES	ENSMUST00000095014.8	known	0.04	1	24	1	24	n	0.00	0	16	0	16	n	0.00	0	36	0	36	n	0.00	0	44	0	44	n	0.02	1	52	1	52	n	0.08	2	24	2	24	y	0.00	0	25	0	25	n	0.00	0	18	0	18	n	0.00	0	16	0	16	n	0.02	1	58	1	58	n	0.00	0	20	0	20	n	0.00	0	34	0	34	n	ENSMUSG00000070939.10	Tgfbrap1	chr1	protein_coding	transforming growth factor, beta receptor associated protein 1
known_NIR_726	chr1	43110815	43131541	-	43110815;43115112	43114411;43131541	ES	ENSMUST00000186694.7	known	0.05	1	18.5	1	24;13	n	0.00	0	16.0	0	16;16	n	0.00	0	28.0	0	36;20	n	0.00	0	30.5	0	44;17	n	0.03	1	39.0	1	52;26	n	0.10	2	18.0	2	24;12	y	0.00	0	16.5	0	25;8	n	0.00	0	15.5	0	18;13	n	0.00	0	12.5	0	16;9	n	0.02	1	42.0	1	58;26	n	0.00	0	18.5	0	20;17	n	0.00	0	23.5	0	34;13	n	ENSMUSG00000070939.10	Tgfbrap1	chr1	protein_coding	transforming growth factor, beta receptor associated protein 1
known_NIR_727	chr1	43115112	43131541	-	43110815	43131541	A3SS	ENSMUST00000188728.2	known	0.93	13	1	13	1	n	1.00	16	0	16	0	n	1.00	20	0	20	0	n	1.00	17	0	17	0	n	0.96	26	1	26	1	n	0.86	12	2	12	2	y	1.00	8	0	8	0	n	1.00	13	0	13	0	n	1.00	9	0	9	0	n	0.96	26	1	26	1	n	1.00	17	0	17	0	n	1.00	13	0	13	0	n	ENSMUSG00000070939.10	Tgfbrap1	chr1	protein_coding	transforming growth factor, beta receptor associated protein 1
known_NIR_728	chr1	43115112	43131541	-	43115112	43136012	A5SS	ENSMUST00000095014.8	known	0.93	13	1	13	1	n	1.00	16	0	16	0	n	0.91	20	2	20	2	y	0.77	17	5	17	5	y	0.93	26	2	26	2	y	0.92	12	1	12	1	n	0.67	8	4	8	4	y	0.87	13	2	13	2	y	0.90	9	1	9	1	n	0.90	26	3	26	3	y	0.89	17	2	17	2	y	0.93	13	1	13	1	n	ENSMUSG00000070939.10	Tgfbrap1	chr1	protein_coding	transforming growth factor, beta receptor associated protein 1
known_NIR_729	chr1	43819329	43829624	-	43819329	43866775	A5SS	ENSMUST00000153317.6	known	1.00	46	0	46	0	n	1.00	32	0	32	0	n	1.00	61	0	61	0	n	1.00	37	0	37	0	n	1.00	58	0	58	0	n	1.00	40	0	40	0	n	1.00	48	0	48	0	n	1.00	37	0	37	0	n	0.92	22	2	22	2	y	1.00	41	0	41	0	n	1.00	50	0	50	0	n	1.00	44	0	44	0	n	ENSMUSG00000057363.13	Uxs1	chr1	protein_coding	UDP-glucuronate decarboxylase 1
known_NIR_730	chr1	43819329	43836405	-	43819329;43829804	43829624;43836405	ES	ENSMUST00000126008.8	known	0.05	2	36.0	2	46;26	y	0.03	1	28.5	1	32;25	n	0.06	3	48.0	3	61;35	y	0.02	1	41.5	1	37;46	n	0.03	2	63.5	2	58;69	y	0.00	0	35.5	0	40;31	n	0.02	1	55.5	1	48;63	n	0.05	2	36.5	2	37;36	y	0.08	2	23.5	2	22;25	y	0.00	0	37.5	0	41;34	n	0.00	0	41.5	0	50;33	n	0.03	1	37.0	1	44;30	n	ENSMUSG00000057363.13	Uxs1	chr1	protein_coding	UDP-glucuronate decarboxylase 1
known_NIR_731	chr1	43819329	43836405	-	43829804	43836405	3pMXE	ENSMUST00000128261.2	known	0.07	2	26	2	26	y	0.04	1	25	1	25	n	0.08	3	35	3	35	y	0.02	1	46	1	46	n	0.03	2	69	2	69	y	0.00	0	31	0	31	n	0.02	1	63	1	63	n	0.05	2	36	2	36	y	0.07	2	25	2	25	y	0.00	0	34	0	34	n	0.00	0	33	0	33	n	0.03	1	30	1	30	n	ENSMUSG00000057363.13	Uxs1	chr1	protein_coding	UDP-glucuronate decarboxylase 1
known_NIR_732	chr1	43844849	43846510	-	43844834	43846510	A3SS	ENSMUST00000126008.8	known	0.12	3	22	3	22	y	0.21	5	19	5	19	y	0.17	5	24	5	24	y	0.26	8	23	8	23	y	0.10	4	37	4	37	y	0.08	2	24	2	24	y	0.21	8	30	8	30	y	0.24	8	25	8	25	y	0.03	1	30	1	30	n	0.19	6	26	6	26	y	0.21	6	23	6	23	y	0.16	4	21	4	21	y	ENSMUSG00000057363.13	Uxs1	chr1	protein_coding	UDP-glucuronate decarboxylase 1
known_NIR_733	chr1	43846537	43866775	-	43819329	43866775	A3SS	ENSMUST00000153317.6	known	1.00	22	0	22	0	n	1.00	21	0	21	0	n	1.00	28	0	28	0	n	1.00	30	0	30	0	n	1.00	42	0	42	0	n	1.00	28	0	28	0	n	1.00	35	0	35	0	n	1.00	32	0	32	0	n	0.93	26	2	26	2	y	1.00	29	0	29	0	n	1.00	28	0	28	0	n	1.00	20	0	20	0	n	ENSMUSG00000057363.13	Uxs1	chr1	protein_coding	UDP-glucuronate decarboxylase 1
known_NIR_734	chr1	44010892	44011716	+	44010892	44011690	A3SS	ENSMUST00000087933.10	known	0.00	0	24	0	24	n	0.00	0	14	0	14	n	0.00	0	64	0	64	n	0.00	0	40	0	40	n	0.00	0	43	0	43	n	0.00	0	32	0	32	n	0.08	3	34	3	34	y	0.00	0	20	0	20	n	0.00	0	27	0	27	n	0.00	0	43	0	43	n	0.00	0	26	0	26	n	0.00	0	42	0	42	n	ENSMUSG00000041763.15	Tpp2	chr1	protein_coding	tripeptidyl peptidase II
known_NIR_735	chr1	44022752	44029671	+	44022752;44024614	44024576;44029671	ES	ENSMUST00000087933.10	known	0.81	62	14.5	62	12;17	y	0.78	50	14.0	50	13;15	y	0.75	104	35.5	104	36;35	y	0.71	52	21.5	52	20;23	y	0.78	71	20.5	71	19;22	y	0.57	27	20.0	27	18;22	y	0.75	68	23.0	68	21;25	y	0.72	35	13.5	35	11;16	y	0.80	39	10.0	39	9;11	y	0.81	61	14.0	61	12;16	y	0.67	37	18.0	37	16;20	y	0.72	70	27.5	70	22;33	y	ENSMUSG00000041763.15	Tpp2	chr1	protein_coding	tripeptidyl peptidase II
known_NIR_736	chr1	44130751;44132477	44132424;44139008	-	44130751	44139008	cassetteExon	ENSMUST00000027215.12	known	0.03	0.5	17	0;1	17	n	0.18	1.5	7	1;2	7	n	0.09	4.0	41	2;6	41	y	0.00	0.0	15	0;0	15	n	0.10	2.0	19	2;2	19	y	0.02	0.5	22	1;0	22	n	0.00	0.0	14	0;0	14	n	0.06	1.0	15	2;0	15	n	0.00	0.0	16	0;0	16	n	0.00	0.0	14	0;0	14	n	0.05	1.0	18	0;2	18	n	0.00	0.0	16	0;0	16	n	ENSMUSG00000026049.12	Tex30	chr1	protein_coding	testis expressed 30
known_NIR_737	chr1	44139095	44141488	-	44139161	44141488	A3SS	ENSMUST00000150911.8	known	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	29	0	29	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.14	2	12	2	12	y	0.00	0	5	0	5	n	0.17	1	5	1	5	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.20	1	4	1	4	n	ENSMUSG00000026049.12	Tex30	chr1	protein_coding	testis expressed 30
known_NIR_738	chr1	44139161	44141060	-	44139161	44140627	5pMXE	ENSMUST00000152239.8	known	1.00	4	0	4	0	n	1.00	1	0	1	0	n	0.64	9	5	9	5	y	1.00	3	0	3	0	n	0.73	8	3	8	3	y	0.57	4	3	4	3	n	0.75	3	1	3	1	n	1.00	2	0	2	0	n	1.00	3	0	3	0	n	1.00	4	0	4	0	n	0.80	4	1	4	1	n	1.00	2	0	2	0	n	ENSMUSG00000026049.12	Tex30	chr1	protein_coding	testis expressed 30
known_NIR_739	chr1	44139161	44141488	-	44139161	44140627	5pMXE	ENSMUST00000152239.8	known	1.00	4	0	4	0	n	1.00	9	0	9	0	n	0.85	29	5	29	5	y	1.00	11	0	11	0	n	0.80	12	3	12	3	y	0.79	11	3	11	3	y	0.92	12	1	12	1	n	1.00	5	0	5	0	n	1.00	5	0	5	0	n	1.00	9	0	9	0	n	0.92	12	1	12	1	n	1.00	4	0	4	0	n	ENSMUSG00000026049.12	Tex30	chr1	protein_coding	testis expressed 30
known_NIR_740	chr1	44139161	44141488	-	44139161	44141060	A5SS	ENSMUST00000147571.8	known	0.50	4	4	4	4	n	0.90	9	1	9	1	n	0.76	29	9	29	9	y	0.79	11	3	11	3	y	0.60	12	8	12	8	y	0.73	11	4	11	4	y	0.80	12	3	12	3	y	0.71	5	2	5	2	n	0.62	5	3	5	3	n	0.69	9	4	9	4	y	0.75	12	4	12	4	y	0.67	4	2	4	2	n	ENSMUSG00000026049.12	Tex30	chr1	protein_coding	testis expressed 30
known_NIR_741	chr1	44139161	44141488	-	44141117	44141488	A3SS&ES	ENSMUST00000133677.8	known	0.57	4	3	4	3	n	1.00	9	0	9	0	n	0.85	29	5	29	5	y	1.00	11	0	11	0	n	0.80	12	3	12	3	y	0.92	11	1	11	1	n	0.86	12	2	12	2	y	0.83	5	1	5	1	n	1.00	5	0	5	0	n	0.75	9	3	9	3	y	0.80	12	3	12	3	y	0.57	4	3	4	3	n	ENSMUSG00000026049.12	Tex30	chr1	protein_coding	testis expressed 30
known_NIR_742	chr1	44139161;44141117	44140627;44141488	-	44139161	44141488	cassetteExon	ENSMUST00000150911.8	known	0.27	1.5	4	0;3	4	n	0.00	0.0	9	0;0	9	n	0.15	5.0	29	5;5	29	y	0.00	0.0	11	0;0	11	n	0.20	3.0	12	3;3	12	y	0.15	2.0	11	3;1	11	n	0.11	1.5	12	1;2	12	n	0.09	0.5	5	0;1	5	n	0.00	0.0	5	0;0	5	n	0.14	1.5	9	0;3	9	n	0.14	2.0	12	1;3	12	n	0.27	1.5	4	0;3	4	n	ENSMUSG00000026049.12	Tex30	chr1	protein_coding	testis expressed 30
known_NIR_743	chr1	44139161;44141117	44141060;44141488	-	44139161	44141488	cassetteExon	ENSMUST00000150911.8	known	0.47	3.5	4	4;3	4	y	0.05	0.5	9	1;0	9	n	0.19	7.0	29	9;5	29	y	0.12	1.5	11	3;0	11	n	0.31	5.5	12	8;3	12	y	0.19	2.5	11	4;1	11	n	0.17	2.5	12	3;2	12	y	0.23	1.5	5	2;1	5	n	0.23	1.5	5	3;0	5	n	0.28	3.5	9	4;3	9	y	0.23	3.5	12	4;3	12	y	0.38	2.5	4	2;3	4	n	ENSMUSG00000026049.12	Tex30	chr1	protein_coding	testis expressed 30
known_NIR_744	chr1	44159434	44165503	+	44159434	44165426	A3SS	ENSMUST00000155917.8	known	0.38	6	10	6	10	y	0.12	1	7	1	7	n	0.36	4	7	4	7	y	0.21	4	15	4	15	y	0.35	7	13	7	13	y	0.30	3	7	3	7	y	0.60	3	2	3	2	n	0.14	2	12	2	12	y	0.50	4	4	4	4	n	0.36	5	9	5	9	y	0.75	3	1	3	1	n	0.00	0	14	0	14	n	ENSMUSG00000041684.12	Bivm	chr1	protein_coding	basic, immunoglobulin-like variable motif containing
known_NIR_745	chr1	44187125	44196097	+	44187310	44196097	A5SS	ENSMUST00000027214.4	known	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.00	0	20	0	20	n	0.17	2	10	2	10	y	0.25	2	6	2	6	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.14	1	6	1	6	n	0.35	6	11	6	11	y	0.00	0	5	0	5	n	0.00	0	9	0	9	n	ENSMUSG00000026048.17	Ercc5	chr1	protein_coding	excision repair cross-complementing rodent repair deficiency, complementation group 5
known_NIR_746	chr1	44187297	44196097	+	44187310	44196097	A5SS	ENSMUST00000027214.4	known	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.08	1	11	1	11	n	0.00	0	20	0	20	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.15	2	11	2	11	y	0.00	0	5	0	5	n	0.00	0	9	0	9	n	ENSMUSG00000026048.17	Ercc5	chr1	protein_coding	excision repair cross-complementing rodent repair deficiency, complementation group 5
known_NIR_747	chr1	44197495	44197965	+	44197419	44197965	A5SS	ENSMUST00000027214.4	known	0.00	0	20	0	20	n	0.08	1	11	1	11	n	0.06	1	17	1	17	n	0.05	1	19	1	19	n	0.32	7	15	7	15	y	0.25	3	9	3	9	y	0.31	4	9	4	9	y	0.24	4	13	4	13	y	0.00	0	8	0	8	n	0.19	4	17	4	17	y	0.15	2	11	2	11	y	0.12	3	22	3	22	y	ENSMUSG00000026048.17	Ercc5	chr1	protein_coding	excision repair cross-complementing rodent repair deficiency, complementation group 5
known_NIR_748	chr1	45958330	45960316	-	45958160	45960316	A3SS	ENSMUST00000027137.11	known	0.02	3	132	3	132	y	0.02	2	101	2	101	y	0.02	3	125	3	125	y	0.00	0	129	0	129	n	0.02	3	175	3	175	y	0.00	0	54	0	54	n	0.01	2	145	2	145	y	0.01	1	118	1	118	n	0.02	2	85	2	85	y	0.04	8	218	8	218	y	0.03	3	113	3	113	y	0.04	8	202	8	202	y	ENSMUSG00000025993.11	Slc40a1	chr1	protein_coding	solute carrier family 40 (iron-regulated transporter), member 1
known_NIR_749	chr1	45964568	45965584	-	45964487	45965584	A3SS	ENSMUST00000187406.7	known	1.00	1	0	1	0	n	0.40	2	3	2	3	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	n	1.00	5	0	5	0	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.33	4	8	4	8	y	1.00	3	0	3	0	n	0.50	6	6	6	6	y	ENSMUSG00000025993.11	Slc40a1	chr1	protein_coding	solute carrier family 40 (iron-regulated transporter), member 1
known_NIR_750	chr1	4847024	4847748	-	4844739	4847748	A3SS	ENSMUST00000130201.8	known	0.92	321	27	321	27	y	0.89	240	30	240	30	y	0.93	151	12	151	12	y	0.89	227	29	227	29	y	0.90	306	35	306	35	y	0.92	116	10	116	10	y	0.89	294	36	294	36	y	0.91	130	13	130	13	y	0.90	228	25	228	25	y	0.93	342	25	342	25	y	0.89	290	37	290	37	y	0.91	331	32	331	32	y	ENSMUSG00000033845.14	Mrpl15	chr1	protein_coding	mitochondrial ribosomal protein L15
known_NIR_751	chr1	4852524	4852791	-	4847871	4852791	A3SS	ENSMUST00000130201.8	known	0.00	0	227	0	227	n	0.01	2	188	2	188	y	0.05	8	138	8	138	y	0.04	9	227	9	227	y	0.04	12	280	12	280	y	0.04	3	78	3	78	y	0.03	10	300	10	300	y	0.01	2	135	2	135	y	0.03	6	187	6	187	y	0.02	7	307	7	307	y	0.02	4	237	4	237	y	0.02	6	257	6	257	y	ENSMUSG00000033845.14	Mrpl15	chr1	protein_coding	mitochondrial ribosomal protein L15
known_NIR_752	chr1	4852956	4855796	-	4852956;4854328	4854174;4855796	ES	ENSMUST00000130201.8	known	0.11	33	261.5	33	286;237	y	0.07	18	224.0	18	188;260	y	0.08	15	164.5	15	153;176	y	0.07	20	270.0	20	263;277	y	0.10	36	309.0	36	305;313	y	0.15	20	112.5	20	98;127	y	0.17	60	283.5	60	265;302	y	0.10	16	146.0	16	142;150	y	0.07	17	227.0	17	224;230	y	0.10	35	319.0	35	295;343	y	0.10	28	249.5	28	251;248	y	0.15	51	285.0	51	297;273	y	ENSMUSG00000033845.14	Mrpl15	chr1	protein_coding	mitochondrial ribosomal protein L15
known_NIR_753	chr1	4852956	4855796	-	4854328	4855796	A3SS&ES	ENSMUST00000115538.5	known	0.12	33	237	33	237	y	0.06	18	260	18	260	y	0.08	15	176	15	176	y	0.07	20	277	20	277	y	0.10	36	313	36	313	y	0.14	20	127	20	127	y	0.17	60	302	60	302	y	0.10	16	150	16	150	y	0.07	17	230	17	230	y	0.09	35	343	35	343	y	0.10	28	248	28	248	y	0.16	51	273	51	273	y	ENSMUSG00000033845.14	Mrpl15	chr1	protein_coding	mitochondrial ribosomal protein L15
known_NIR_754	chr1	4878205	4898807	+	4878205;4878709	4878678;4898807	ES	ENSMUST00000134384.8	known	0.00	0	244.5	0	245;244	n	0.00	0	142.5	0	144;141	n	0.00	1	204.5	1	209;200	n	0.00	0	378.5	0	387;370	n	0.01	3	371.5	3	369;374	y	0.01	2	144.5	2	141;148	y	0.00	0	338.0	0	350;326	n	0.01	2	167.5	2	177;158	y	0.01	2	184.5	2	178;191	y	0.00	0	370.0	0	363;377	n	0.00	1	244.0	1	253;235	n	0.00	0	322.5	0	339;306	n	ENSMUSG00000025903.15	Lypla1	chr1	protein_coding	lysophospholipase 1
known_NIR_755	chr1	4878588	4878678	+	4878205	4878678	A5SS	ENSMUST00000134384.8	known	0.00	1	245	1	245	n	0.01	2	144	2	144	y	0.00	0	209	0	209	n	0.01	4	387	4	387	y	0.02	6	369	6	369	y	0.00	0	141	0	141	n	0.01	4	350	4	350	y	0.01	1	177	1	177	n	0.02	4	178	4	178	y	0.01	5	363	5	363	y	0.01	2	253	2	253	y	0.01	5	339	5	339	y	ENSMUSG00000025903.15	Lypla1	chr1	protein_coding	lysophospholipase 1
known_NIR_756	chr1	4898872	4902534	+	4898872;4900538	4900491;4902534	ES	ENSMUST00000134384.8	known	0.00	0	295.0	0	281;309	n	0.00	0	189.0	0	170;208	n	0.00	0	238.0	0	235;241	n	0.00	1	408.5	1	389;428	n	0.01	3	415.5	3	418;413	y	0.00	0	156.0	0	148;164	n	0.01	3	402.0	3	378;426	y	0.02	3	192.0	3	175;209	y	0.01	2	279.0	2	263;295	y	0.00	2	422.5	2	397;448	y	0.01	2	293.0	2	279;307	y	0.00	1	393.5	1	359;428	n	ENSMUSG00000025903.15	Lypla1	chr1	protein_coding	lysophospholipase 1
known_NIR_757	chr1	4907297	4911179	+	4907297;4909711	4909610;4911179	ES	ENSMUST00000134384.8	known	0.05	19	328.0	19	302;354	y	0.04	9	219.5	9	214;225	y	0.09	22	222.5	22	209;236	y	0.06	27	395.0	27	387;403	y	0.04	19	436.0	19	406;466	y	0.05	8	145.5	8	145;146	y	0.03	13	391.5	13	385;398	y	0.05	9	188.5	9	195;182	y	0.03	9	266.5	9	267;266	y	0.06	27	437.5	27	409;466	y	0.04	14	300.0	14	276;324	y	0.04	17	414.0	17	419;409	y	ENSMUSG00000025903.15	Lypla1	chr1	protein_coding	lysophospholipase 1
known_NIR_758	chr1	4907297	4911179	+	4909711	4911179	A5SS	ENSMUST00000141278.2	known	0.05	19	354	19	354	y	0.04	9	225	9	225	y	0.09	22	236	22	236	y	0.06	27	403	27	403	y	0.04	19	466	19	466	y	0.05	8	146	8	146	y	0.03	13	398	13	398	y	0.05	9	182	9	182	y	0.03	9	266	9	266	y	0.05	27	466	27	466	y	0.04	14	324	14	324	y	0.04	17	409	17	409	y	ENSMUSG00000025903.15	Lypla1	chr1	protein_coding	lysophospholipase 1
known_NIR_759	chr1	4911355	4937693	+	4911355	4915186	3pMXE	ENSMUST00000027036.11	known	0.01	2	391	2	391	y	0.00	1	282	1	282	n	0.01	3	331	3	331	y	0.01	3	475	3	475	y	0.00	0	590	0	590	n	0.00	0	172	0	172	n	0.01	3	474	3	474	y	0.00	0	200	0	200	n	0.00	0	400	0	400	n	0.00	2	556	2	556	y	0.01	2	381	2	381	y	0.00	2	521	2	521	y	ENSMUSG00000025903.15	Lypla1	chr1	protein_coding	lysophospholipase 1
known_NIR_760	chr1	4928199	4937693	+	4911355	4937693	A5SS	ENSMUST00000155020.2	known	0.98	84	2	84	2	y	0.98	55	1	55	1	n	0.98	180	3	180	3	y	0.98	171	3	171	3	y	1.00	193	0	193	0	n	1.00	95	0	95	0	n	0.97	114	3	114	3	y	1.00	104	0	104	0	n	1.00	96	0	96	0	n	0.99	135	2	135	2	y	0.98	101	2	101	2	y	0.99	166	2	166	2	y	ENSMUSG00000104217.2	Gm37988	chr1	protein_coding	predicted gene, 37988
known_NIR_761	chr1	4928726	4937693	+	4928199	4937693	A5SS	ENSMUST00000081551.14	known	0.00	0	84	0	84	n	0.00	0	55	0	55	n	0.01	2	180	2	180	y	0.00	0	171	0	171	n	0.01	1	193	1	193	n	0.00	0	95	0	95	n	0.00	0	114	0	114	n	0.00	0	104	0	104	n	0.00	0	96	0	96	n	0.00	0	135	0	135	n	0.00	0	101	0	101	n	0.00	0	166	0	166	n	ENSMUSG00000033813.16	Tcea1	chr1	protein_coding	transcription elongation factor A (SII) 1
known_NIR_762	chr1	51516775	51517460	-	51516775	51516984	A5SS	ENSMUST00000190103.7	known	0.40	6	9	6	9	y	0.36	8	14	8	14	y	0.33	18	36	18	36	y	0.24	7	22	7	22	y	0.38	9	15	9	15	y	0.46	6	7	6	7	y	0.36	12	21	12	21	y	0.40	4	6	4	6	y	0.60	3	2	3	2	n	0.42	11	15	11	15	y	0.21	3	11	3	11	y	0.24	8	25	8	25	y	ENSMUSG00000026107.12	Nabp1	chr1	protein_coding	nucleic acid binding protein 1
known_NIR_763	chr1	51516775	51517460	-	51516775	51517531	A5SS	ENSMUST00000188204.7	known	0.86	6	1	6	1	n	0.80	8	2	8	2	y	1.00	18	0	18	0	n	1.00	7	0	7	0	n	0.64	9	5	9	5	y	1.00	6	0	6	0	n	0.92	12	1	12	1	n	0.67	4	2	4	2	n	1.00	3	0	3	0	n	0.92	11	1	11	1	n	1.00	3	0	3	0	n	0.89	8	1	8	1	n	ENSMUSG00000026107.12	Nabp1	chr1	protein_coding	nucleic acid binding protein 1
known_NIR_764	chr1	51516775	51517531	-	51516775	51516984	A5SS	ENSMUST00000190103.7	known	0.10	1	9	1	9	n	0.12	2	14	2	14	y	0.00	0	36	0	36	n	0.00	0	22	0	22	n	0.25	5	15	5	15	y	0.00	0	7	0	7	n	0.05	1	21	1	21	n	0.25	2	6	2	6	n	0.00	0	2	0	2	n	0.06	1	15	1	15	n	0.00	0	11	0	11	n	0.04	1	25	1	25	n	ENSMUSG00000026107.12	Nabp1	chr1	protein_coding	nucleic acid binding protein 1
known_NIR_765	chr1	5153848	5154640	+	5153501	5154640	A5SS	ENSMUST00000044369.13	known	0.05	5	91	5	91	y	0.16	7	37	7	37	y	0.16	18	96	18	96	y	0.04	4	93	4	93	y	0.07	8	101	8	101	y	0.10	6	52	6	52	y	0.16	15	77	15	77	y	0.12	7	50	7	50	y	0.15	11	64	11	64	y	0.08	7	83	7	83	y	0.06	5	75	5	75	y	0.12	12	89	12	89	y	ENSMUSG00000033793.13	Atp6v1h	chr1	protein_coding	ATPase, H+ transporting, lysosomal V1 subunit H
known_NIR_766	chr1	5168356	5187613	+	5168356;5171346	5171293;5187613	ES	ENSMUST00000192847.6	known	0.04	5	121.0	5	109;133	y	0.03	3	99.0	3	89;109	y	0.02	3	147.0	3	133;161	y	0.03	5	143.5	5	132;155	y	0.00	0	165.0	0	143;187	n	0.00	0	62.0	0	58;66	n	0.06	10	155.0	10	131;179	y	0.03	2	67.5	2	59;76	y	0.06	6	103.0	6	93;113	y	0.06	8	134.5	8	127;142	y	0.00	0	114.0	0	98;130	n	0.08	13	141.0	13	127;155	y	ENSMUSG00000033793.13	Atp6v1h	chr1	protein_coding	ATPase, H+ transporting, lysosomal V1 subunit H
known_NIR_767	chr1	51803123	51808163	-	51803123	51805981	5pMXE	ENSMUST00000140930.2	known	0.22	36	128	36	128	y	0.24	29	94	29	94	y	0.08	14	160	14	160	y	0.20	38	151	38	151	y	0.18	51	228	51	228	y	0.17	24	120	24	120	y	0.22	61	214	61	214	y	0.16	30	162	30	162	y	0.17	25	124	25	124	y	0.20	50	199	50	199	y	0.27	33	88	33	88	y	0.24	58	184	58	184	y	ENSMUSG00000018417.15	Myo1b	chr1	protein_coding	myosin IB
known_NIR_768	chr1	51803123	51808163	-	51803123;51806067	51805981;51808163	ES	ENSMUST00000046390.14	known	0.22	36	129.5	36	128;131	y	0.24	29	92.5	29	94;91	y	0.08	14	160.0	14	160;160	y	0.20	38	152.5	38	151;154	y	0.18	51	238.0	51	228;248	y	0.17	24	115.0	24	120;110	y	0.23	61	209.0	61	214;204	y	0.18	30	139.5	30	162;117	y	0.18	25	112.5	25	124;101	y	0.21	50	186.0	50	199;173	y	0.28	33	87.0	33	88;86	y	0.25	58	170.0	58	184;156	y	ENSMUSG00000018417.15	Myo1b	chr1	protein_coding	myosin IB
known_NIR_769	chr1	51803123	51808163	-	51806067	51808163	3pMXE	ENSMUST00000136273.2	known	0.22	36	131	36	131	y	0.24	29	91	29	91	y	0.08	14	160	14	160	y	0.20	38	154	38	154	y	0.17	51	248	51	248	y	0.18	24	110	24	110	y	0.23	61	204	61	204	y	0.20	30	117	30	117	y	0.20	25	101	25	101	y	0.22	50	173	50	173	y	0.28	33	86	33	86	y	0.27	58	156	58	156	y	ENSMUSG00000018417.15	Myo1b	chr1	protein_coding	myosin IB
known_NIR_770	chr1	51806067;51807895	51807809;51808163	-	51806067	51808163	cassetteExon	ENSMUST00000046390.14	known	0.02	2.0	131	4;0	131	n	0.04	4.0	91	5;3	91	y	0.04	7.5	160	5;10	160	y	0.02	3.0	154	4;2	154	y	0.04	9.0	248	9;9	248	y	0.07	8.0	110	8;8	110	y	0.03	5.5	204	5;6	204	y	0.06	8.0	117	7;9	117	y	0.03	3.0	101	1;5	101	n	0.04	8.0	173	5;11	173	y	0.04	4.0	86	3;5	86	y	0.05	7.5	156	4;11	156	y	ENSMUSG00000018417.15	Myo1b	chr1	protein_coding	myosin IB
known_NIR_771	chr1	51807895	51808163	-	51803123	51808163	A3SS	ENSMUST00000114537.9	known	0.00	0	36	0	36	n	0.09	3	29	3	29	y	0.42	10	14	10	14	y	0.05	2	38	2	38	y	0.15	9	51	9	51	y	0.25	8	24	8	24	y	0.09	6	61	6	61	y	0.23	9	30	9	30	y	0.17	5	25	5	25	y	0.18	11	50	11	50	y	0.13	5	33	5	33	y	0.16	11	58	11	58	y	ENSMUSG00000018417.15	Myo1b	chr1	protein_coding	myosin IB
known_NIR_772	chr1	51922385	51935124	-	51922385	51946290	A5SS	ENSMUST00000114541.8	known	1.00	78	0	78	0	n	1.00	32	0	32	0	n	0.96	50	2	50	2	y	1.00	66	0	66	0	n	1.00	117	0	117	0	n	1.00	60	0	60	0	n	1.00	96	0	96	0	n	1.00	79	0	79	0	n	1.00	64	0	64	0	n	1.00	95	0	95	0	n	1.00	55	0	55	0	n	1.00	98	0	98	0	n	ENSMUSG00000018417.15	Myo1b	chr1	protein_coding	myosin IB
known_NIR_773	chr1	51922385	51935124	-	51922385	51954920	A5SS	ENSMUST00000046390.14	known	0.89	78	10	78	10	y	0.71	32	13	32	13	y	0.41	50	73	50	73	y	0.78	66	19	66	19	y	0.85	117	21	117	21	y	0.79	60	16	60	16	y	0.91	96	9	96	9	y	0.75	79	26	79	26	y	0.85	64	11	64	11	y	0.83	95	20	95	20	y	0.85	55	10	55	10	y	0.81	98	23	98	23	y	ENSMUSG00000018417.15	Myo1b	chr1	protein_coding	myosin IB
known_NIR_774	chr1	51922385	51946290	-	51922385	51954920	A5SS	ENSMUST00000046390.14	known	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.03	2	73	2	73	y	0.00	0	19	0	19	n	0.00	0	21	0	21	n	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.00	0	26	0	26	n	0.00	0	11	0	11	n	0.00	0	20	0	20	n	0.00	0	10	0	10	n	0.00	0	23	0	23	n	ENSMUSG00000018417.15	Myo1b	chr1	protein_coding	myosin IB
known_NIR_775	chr1	51922385	51950411	-	51922385	51935124	5pMXE	ENSMUST00000144694.2	known	0.00	0	78	0	78	n	0.00	0	32	0	32	n	0.00	0	50	0	50	n	0.00	0	66	0	66	n	0.01	1	117	1	117	n	0.00	0	60	0	60	n	0.00	0	96	0	96	n	0.01	1	79	1	79	n	0.00	0	64	0	64	n	0.00	0	95	0	95	n	0.00	0	55	0	55	n	0.02	2	98	2	98	y	ENSMUSG00000018417.15	Myo1b	chr1	protein_coding	myosin IB
known_NIR_776	chr1	52158767	52159071	+	52158782	52159071	A5SS	ENSMUST00000186574.7	known	0.18	6	27	6	27	y	0.09	2	21	2	21	y	0.15	6	33	6	33	y	0.17	6	30	6	30	y	0.33	13	26	13	26	y	0.33	2	4	2	4	n	0.19	6	25	6	25	y	0.37	7	12	7	12	y	0.20	9	35	9	35	y	0.19	9	39	9	39	y	0.22	6	21	6	21	y	0.09	4	43	4	43	y	ENSMUSG00000026104.15	Stat1	chr1	protein_coding	signal transducer and activator of transcription 1
known_NIR_777	chr1	52159231	52161750	+	52159194	52161750	A5SS	ENSMUST00000185516.2	known	0.78	47	13	47	13	y	0.79	26	7	26	7	y	0.76	44	14	44	14	y	0.75	52	17	52	17	y	0.82	67	15	67	15	y	0.50	14	14	14	14	y	0.79	60	16	60	16	y	0.87	26	4	26	4	y	0.82	40	9	40	9	y	0.82	64	14	64	14	y	0.65	24	13	24	13	y	0.75	43	14	43	14	y	ENSMUSG00000101628.2	Gm28177	chr1	lncRNA	predicted gene 28177
known_NIR_778	chr1	52171792	52176038	+	52171792;52174840	52174762;52176038	ES	ENSMUST00000185516.2	known	0.02	1	60.0	1	61;59	n	0.02	1	40.5	1	40;41	n	0.00	0	58.0	0	53;63	n	0.00	0	68.5	0	62;75	n	0.00	0	72.5	0	77;68	n	0.00	0	10.5	0	12;9	n	0.02	1	60.5	1	72;49	n	0.00	0	27.5	0	34;21	n	0.00	0	50.5	0	44;57	n	0.00	0	74.5	0	65;84	n	0.03	2	57.5	2	55;60	y	0.00	0	80.0	0	74;86	n	ENSMUSG00000101628.2	Gm28177	chr1	lncRNA	predicted gene 28177
known_NIR_779	chr1	52226953	52227838	-	52208117	52227838	A3SS	ENSMUST00000114513.9	known	0.75	3	1	3	1	n	0.88	7	1	7	1	n	0.71	12	5	12	5	y	0.75	3	1	3	1	n	0.83	10	2	10	2	y	0.50	3	3	3	3	n	0.81	13	3	13	3	y	0.00	0	2	0	2	n	1.00	2	0	2	0	n	-	-	-	-	-	-	0.57	4	3	4	3	n	0.83	5	1	5	1	n	ENSMUSG00000026103.15	Gls	chr1	protein_coding	glutaminase
known_NIR_780	chr1	52227012	52227838	-	52226953	52227838	A3SS	ENSMUST00000114510.8	known	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.14	2	12	2	12	y	0.00	0	3	0	3	n	0.17	2	10	2	10	y	0.40	2	3	2	3	n	0.07	1	13	1	13	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	5	0	5	n	ENSMUSG00000026103.15	Gls	chr1	protein_coding	glutaminase
known_NIR_781	chr1	52504106	52506049	-	52504103	52506049	A3SS	ENSMUST00000186764.7	known	0.81	105	25	105	25	y	0.86	79	13	79	13	y	0.85	222	38	222	38	y	0.88	124	17	124	17	y	0.88	207	27	207	27	y	0.93	124	10	124	10	y	0.88	135	18	135	18	y	0.89	124	16	124	16	y	0.77	101	31	101	31	y	0.89	177	23	177	23	y	0.88	128	17	128	17	y	0.88	181	24	181	24	y	ENSMUSG00000002881.15	Nab1	chr1	protein_coding	Ngfi-A binding protein 1
known_NIR_782	chr1	52833829	52838444	-	52833829;52836260	52836200;52838444	ES	ENSMUST00000027271.9	known	0.00	0	7.0	0	6;8	n	0.00	0	5.0	0	3;7	n	0.00	0	14.5	0	12;17	n	0.14	2	12.5	2	12;13	y	0.00	0	20.5	0	23;18	n	0.00	0	5.5	0	1;10	n	0.00	0	19.0	0	17;21	n	0.00	0	7.0	0	9;5	n	0.00	0	11.0	0	11;11	n	0.00	0	24.0	0	26;22	n	0.00	0	13.5	0	15;12	n	0.00	0	14.0	0	17;11	n	ENSMUSG00000026102.10	Inpp1	chr1	protein_coding	inositol polyphosphate-1-phosphatase
known_NIR_783	chr1	52833829	52838444	-	52836260	52838444	3pMXE	ENSMUST00000162351.2	known	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	17	0	17	n	0.13	2	13	2	13	y	0.00	0	18	0	18	n	0.00	0	10	0	10	n	0.00	0	21	0	21	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	22	0	22	n	0.00	0	12	0	12	n	0.00	0	11	0	11	n	ENSMUSG00000026102.10	Inpp1	chr1	protein_coding	inositol polyphosphate-1-phosphatase
known_NIR_784	chr1	52891060	52892827	+	52884303	52892827	A5SS	ENSMUST00000159352.8	known	0.00	0	86	0	86	n	0.08	6	69	6	69	y	0.00	0	97	0	97	n	0.00	0	140	0	140	n	0.04	6	142	6	142	y	0.04	3	82	3	82	y	0.01	1	117	1	117	n	0.02	2	90	2	90	y	0.00	0	102	0	102	n	0.02	4	168	4	168	y	0.01	1	113	1	113	n	0.01	1	121	1	121	n	ENSMUSG00000041426.13	Hibch	chr1	protein_coding	3-hydroxyisobutyryl-Coenzyme A hydrolase
known_NIR_785	chr1	53354258	53355640	+	53354258	53357061	A3SS	ENSMUST00000190734.2	known	0.05	2	39	2	39	y	0.00	0	36	0	36	n	0.04	2	51	2	51	y	0.00	0	39	0	39	n	0.00	0	55	0	55	n	0.00	0	21	0	21	n	0.00	0	43	0	43	n	0.00	0	30	0	30	n	0.00	0	36	0	36	n	0.00	0	66	0	66	n	0.00	0	32	0	32	n	0.05	2	41	2	41	y	ENSMUSG00000100679.2	Gm28778	chr1	protein_coding	predicted gene 28778
known_NIR_786	chr1	53354258	53357066	+	53354258	53357061	A3SS	ENSMUST00000190734.2	known	0.07	3	39	3	39	y	0.05	2	36	2	36	y	0.06	3	51	3	51	y	0.15	7	39	7	39	y	0.04	2	55	2	55	y	0.19	5	21	5	21	y	0.14	7	43	7	43	y	0.14	5	30	5	30	y	0.08	3	36	3	36	y	0.07	5	66	5	66	y	0.11	4	32	4	32	y	0.13	6	41	6	41	y	ENSMUSG00000100679.2	Gm28778	chr1	protein_coding	predicted gene 28778
known_NIR_787	chr1	53360369	53362326	+	53360369;53360726	53360655;53362326	ES	ENSMUST00000027265.10	known	0.07	6	79.0	6	82;76	y	0.12	8	56.5	8	52;61	y	0.07	5	69.0	5	81;57	y	0.10	6	55.0	6	53;57	y	0.16	12	64.0	12	57;71	y	0.13	6	39.0	6	46;32	y	0.12	10	75.0	10	62;88	y	0.05	2	39.0	2	37;41	y	0.11	7	56.0	7	59;53	y	0.15	16	92.5	16	83;102	y	0.19	16	67.0	16	59;75	y	0.20	19	74.0	19	75;73	y	ENSMUSG00000026096.15	Osgepl1	chr1	protein_coding	O-sialoglycoprotein endopeptidase-like 1
known_NIR_788	chr1	53360369;53360543	53360464;53360655	+	53360369	53360655	cassetteExon	ENSMUST00000027265.10	known	0.00	0.0	82	0;0	82	n	0.00	0.0	52	0;0	52	n	0.01	1.0	81	0;2	81	n	0.00	0.0	53	0;0	53	n	0.01	0.5	57	1;0	57	n	0.00	0.0	46	0;0	46	n	0.04	2.5	62	3;2	62	y	0.01	0.5	37	0;1	37	n	0.00	0.0	59	0;0	59	n	0.00	0.0	83	0;0	83	n	0.00	0.0	59	0;0	59	n	0.01	1.0	75	0;2	75	n	ENSMUSG00000026096.15	Osgepl1	chr1	protein_coding	O-sialoglycoprotein endopeptidase-like 1
known_NIR_789	chr1	53360369;53360726	53360464;53362326	+	53360369	53362326	cassetteExon	ENSMUST00000151296.8	known	0.86	38.0	6	0;76	6	n	0.79	30.5	8	0;61	8	n	0.85	28.5	5	0;57	5	n	0.83	28.5	6	0;57	6	n	0.75	36.0	12	1;71	12	n	0.73	16.0	6	0;32	6	n	0.82	45.5	10	3;88	10	y	0.91	20.5	2	0;41	2	n	0.79	26.5	7	0;53	7	n	0.76	51.0	16	0;102	16	n	0.70	37.5	16	0;75	16	n	0.66	36.5	19	0;73	19	n	ENSMUSG00000026096.15	Osgepl1	chr1	protein_coding	O-sialoglycoprotein endopeptidase-like 1
known_NIR_790	chr1	53385920	53387605	-	53385920	53386174	A5SS	ENSMUST00000144660.3	known	0.05	7	122	7	122	y	0.06	9	149	9	149	y	0.17	28	139	28	139	y	0.09	12	116	12	116	y	0.13	20	139	20	139	y	0.08	9	97	9	97	y	0.10	18	169	18	169	y	0.09	7	73	7	73	y	0.08	9	101	9	101	y	0.07	15	190	15	190	y	0.08	13	148	13	148	y	0.05	8	147	8	147	y	ENSMUSG00000099913.2	Gm28551	chr1	protein_coding	predicted gene 28551
known_NIR_791	chr1	53810981	53824233	-	53810981;53815838	53815676;53824233	ES	ENSMUST00000027263.14	known	0.00	0	4.0	0	5;3	n	0.00	0	3.0	0	4;2	n	0.09	2	19.5	2	17;22	y	0.22	1	3.5	1	5;2	n	0.00	0	9.5	0	6;13	n	0.00	0	1.5	0	1;2	n	0.00	0	6.5	0	10;3	n	0.00	0	5.0	0	2;8	n	0.00	0	3.0	0	3;3	n	0.00	0	3.0	0	4;2	n	0.57	2	1.5	2	1;2	n	0.00	0	6.5	0	9;4	n	ENSMUSG00000026094.15	Stk17b	chr1	protein_coding	serine/threonine kinase 17b (apoptosis-inducing)
known_NIR_792	chr1	55053721	55055535	-	55053721	55054028	5pMXE	ENSMUST00000188859.7	known	0.89	48	6	48	6	y	0.91	30	3	30	3	y	0.92	103	9	103	9	y	0.92	80	7	80	7	y	0.90	111	13	111	13	y	0.98	51	1	51	1	n	0.89	65	8	65	8	y	0.84	53	10	53	10	y	0.95	56	3	56	3	y	0.95	73	4	73	4	y	0.79	41	11	41	11	y	0.85	79	14	79	14	y	ENSMUSG00000025982.14	Sf3b1	chr1	protein_coding	splicing factor 3b, subunit 1
known_NIR_793	chr1	55053721;55054083	55054028;55055535	-	55053721	55055535	cassetteExon	ENSMUST00000027127.14	known	0.08	4.0	48	6;2	48	y	0.05	1.5	30	3;0	30	n	0.06	6.5	103	9;4	103	y	0.04	3.5	80	7;0	80	n	0.06	7.5	111	13;2	111	y	0.03	1.5	51	1;2	51	n	0.06	4.5	65	8;1	65	n	0.12	7.5	53	10;5	53	y	0.03	2.0	56	3;1	56	n	0.04	3.0	73	4;2	73	y	0.15	7.5	41	11;4	41	y	0.09	7.5	79	14;1	79	n	ENSMUSG00000025982.14	Sf3b1	chr1	protein_coding	splicing factor 3b, subunit 1
known_NIR_794	chr1	55055341	55055535	-	55053721	55055535	A3SS	ENSMUST00000027127.14	known	0.00	0	48	0	48	n	0.00	0	30	0	30	n	0.01	1	103	1	103	n	0.02	2	80	2	80	y	0.01	1	111	1	111	n	0.00	0	51	0	51	n	0.03	2	65	2	65	y	0.00	0	53	0	53	n	0.00	0	56	0	56	n	0.01	1	73	1	73	n	0.02	1	41	1	41	n	0.00	0	79	0	79	n	ENSMUSG00000025982.14	Sf3b1	chr1	protein_coding	splicing factor 3b, subunit 1
known_NIR_795	chr1	55092149;55100583	55100434;55103340	+	55092149	55103340	cassetteExon	ENSMUST00000087617.11	known	0.98	136.0	3	123;149	3	y	0.94	119.5	8	97;142	8	y	0.99	138.0	2	121;155	2	y	0.98	143.0	3	122;164	3	y	0.94	68.5	4	47;90	4	y	0.93	42.5	3	45;40	3	y	0.98	87.5	2	75;100	2	y	0.95	36.0	2	32;40	2	y	1.00	74.0	0	70;78	0	n	1.00	154.0	0	125;183	0	n	0.95	75.5	4	68;83	4	y	0.97	142.5	4	122;163	4	y	ENSMUSG00000025981.14	Coq10b	chr1	protein_coding	coenzyme Q10B
known_NIR_796	chr1	55126100	55127148	-	55126100	55126938	A5SS	ENSMUST00000027123.15	known	0.04	15	334	15	334	y	0.06	16	253	16	253	y	0.21	91	345	91	345	y	0.05	36	649	36	649	y	0.10	57	505	57	505	y	0.20	37	147	37	147	y	0.09	45	460	45	460	y	0.15	34	191	34	191	y	0.07	27	349	27	349	y	0.06	32	511	32	511	y	0.06	23	359	23	359	y	0.08	46	535	46	535	y	ENSMUSG00000025980.15	Hspd1	chr1	protein_coding	heat shock protein 1 (chaperonin)
known_NIR_797	chr1	55126100	55127304	-	55126100	55126938	5pMXE	ENSMUST00000027123.15	known	0.01	4	334	4	334	y	0.00	0	253	0	253	n	0.01	2	345	2	345	y	0.00	2	649	2	649	y	0.00	0	505	0	505	n	0.00	0	147	0	147	n	0.00	0	460	0	460	n	0.02	3	191	3	191	y	0.00	1	349	1	349	n	0.00	0	511	0	511	n	0.00	0	359	0	359	n	0.00	1	535	1	535	n	ENSMUSG00000025980.15	Hspd1	chr1	protein_coding	heat shock protein 1 (chaperonin)
known_NIR_798	chr1	55126100	55127304	-	55126100	55127148	A5SS	ENSMUST00000127861.8	known	0.21	4	15	4	15	y	0.00	0	16	0	16	n	0.02	2	91	2	91	y	0.05	2	36	2	36	y	0.00	0	57	0	57	n	0.00	0	37	0	37	n	0.00	0	45	0	45	n	0.08	3	34	3	34	y	0.04	1	27	1	27	n	0.00	0	32	0	32	n	0.00	0	23	0	23	n	0.02	1	46	1	46	n	ENSMUSG00000025980.15	Hspd1	chr1	protein_coding	heat shock protein 1 (chaperonin)
known_NIR_799	chr1	55170518	55184283	+	55170518	55175836	A3SS&ES	ENSMUST00000027122.14	known	0.00	0	31	0	31	n	0.00	0	22	0	22	n	0.00	0	66	0	66	n	0.00	0	52	0	52	n	0.04	3	69	3	69	y	0.00	0	31	0	31	n	0.03	2	61	2	61	y	0.03	1	36	1	36	n	0.02	1	48	1	48	n	0.02	1	56	1	56	n	0.00	0	42	0	42	n	0.02	1	58	1	58	n	ENSMUSG00000025979.14	Mob4	chr1	protein_coding	MOB family member 4, phocein
known_NIR_800	chr1	55170518	55184283	+	55175898	55184283	A5SS&ES	ENSMUST00000162553.2	known	0.00	0	43	0	43	n	0.00	0	33	0	33	n	0.00	0	80	0	80	n	0.00	0	70	0	70	n	0.04	3	77	3	77	y	0.00	0	51	0	51	n	0.02	2	86	2	86	y	0.02	1	46	1	46	n	0.01	1	67	1	67	n	0.01	1	81	1	81	n	0.00	0	49	0	49	n	0.01	1	78	1	78	n	ENSMUSG00000025979.14	Mob4	chr1	protein_coding	MOB family member 4, phocein
known_NIR_801	chr1	55170518;55175898	55175836;55184283	+	55170518	55184283	cassetteExon	ENSMUST00000159311.8	known	1.00	37.0	0	31;43	0	n	1.00	27.5	0	22;33	0	n	1.00	73.0	0	66;80	0	n	1.00	61.0	0	52;70	0	n	0.96	73.0	3	69;77	3	y	1.00	41.0	0	31;51	0	n	0.97	73.5	2	61;86	2	y	0.98	41.0	1	36;46	1	n	0.98	57.5	1	48;67	1	n	0.99	68.5	1	56;81	1	n	1.00	45.5	0	42;49	0	n	0.99	68.0	1	58;78	1	n	ENSMUSG00000025979.14	Mob4	chr1	protein_coding	MOB family member 4, phocein
known_NIR_802	chr1	55170518;55175898	55175836;55187478	+	55170518;55184383	55184283;55187478	MXE	ENSMUST00000159311.8	known	0.37	15.5	26.5	31;0	0;53	n	0.34	11.0	21.5	22;0	0;43	n	0.43	33.0	44.0	66;0	0;88	n	0.54	26.0	22.5	52;0	0;45	n	0.47	35.5	40.5	69;2	3;78	y	0.36	15.5	27.5	31;0	0;55	n	0.42	30.5	41.5	61;0	2;81	n	0.44	18.0	22.5	36;0	1;44	n	0.41	24.5	35.5	48;1	1;70	n	0.38	28.0	46.5	56;0	1;92	n	0.50	21.0	21.0	42;0	0;42	n	0.42	29.0	40.0	58;0	1;79	n	ENSMUSG00000025979.14	Mob4	chr1	protein_coding	MOB family member 4, phocein
known_NIR_803	chr1	55170784	55175836	+	55170518	55175836	A5SS	ENSMUST00000162364.8	known	0.00	0	31	0	31	n	0.00	0	22	0	22	n	0.00	0	66	0	66	n	0.00	0	52	0	52	n	0.00	0	69	0	69	n	0.09	3	31	3	31	y	0.00	0	61	0	61	n	0.00	0	36	0	36	n	0.00	0	48	0	48	n	0.03	2	56	2	56	y	0.00	0	42	0	42	n	0.00	0	58	0	58	n	ENSMUSG00000025979.14	Mob4	chr1	protein_coding	MOB family member 4, phocein
known_NIR_804	chr1	55175898	55187478	+	55175898	55184283	3pMXE	ENSMUST00000159743.2	known	0.00	0	43	0	43	n	0.00	0	33	0	33	n	0.00	0	80	0	80	n	0.00	0	70	0	70	n	0.03	2	77	2	77	y	0.00	0	51	0	51	n	0.00	0	86	0	86	n	0.00	0	46	0	46	n	0.01	1	67	1	67	n	0.00	0	81	0	81	n	0.00	0	49	0	49	n	0.00	0	78	0	78	n	ENSMUSG00000025979.14	Mob4	chr1	protein_coding	MOB family member 4, phocein
known_NIR_805	chr1	55175898	55187478	+	55175898;55184383	55184283;55187478	ES	ENSMUST00000162364.8	known	0.00	0	48.0	0	43;53	n	0.00	0	38.0	0	33;43	n	0.00	0	84.0	0	80;88	n	0.00	0	57.5	0	70;45	n	0.03	2	77.5	2	77;78	y	0.00	0	53.0	0	51;55	n	0.00	0	83.5	0	86;81	n	0.00	0	45.0	0	46;44	n	0.01	1	68.5	1	67;70	n	0.00	0	86.5	0	81;92	n	0.00	0	45.5	0	49;42	n	0.00	0	78.5	0	78;79	n	ENSMUSG00000025979.14	Mob4	chr1	protein_coding	MOB family member 4, phocein
known_NIR_806	chr1	57417105	57418866	+	57417105	57421902	A3SS	ENSMUST00000042734.3	known	0.37	13	22	13	22	y	0.29	6	15	6	15	y	0.10	2	18	2	18	y	0.07	3	38	3	38	y	0.29	11	27	11	27	y	0.15	2	11	2	11	y	0.32	10	21	10	21	y	0.36	5	9	5	9	y	0.12	3	23	3	23	y	0.28	11	29	11	29	y	0.00	0	12	0	12	n	0.36	9	16	9	16	y	ENSMUSG00000038323.4	1700066M21Rik	chr1	protein_coding	RIKEN cDNA 1700066M21 gene
known_NIR_807	chr1	57417105	57419201	+	57417105	57421902	A3SS	ENSMUST00000042734.3	known	0.08	2	22	2	22	y	0.12	2	15	2	15	y	0.10	2	18	2	18	y	0.10	4	38	4	38	y	0.21	7	27	7	27	y	0.00	0	11	0	11	n	0.16	4	21	4	21	y	0.25	3	9	3	9	y	0.28	9	23	9	23	y	0.15	5	29	5	29	y	0.20	3	12	3	12	y	0.33	8	16	8	16	y	ENSMUSG00000038323.4	1700066M21Rik	chr1	protein_coding	RIKEN cDNA 1700066M21 gene
known_NIR_808	chr1	57417105	57419201	+	57417105;57418971	57418866;57419201	ES	ENSMUST00000185952.2	known	0.15	2	11.5	2	13;10	y	0.29	2	5.0	2	6;4	y	0.50	2	2.0	2	2;2	n	0.44	4	5.0	4	3;7	y	0.48	7	7.5	7	11;4	y	0.00	0	2.5	0	2;3	n	0.27	4	11.0	4	10;12	y	0.40	3	4.5	3	5;4	y	0.82	9	2.0	9	3;1	n	0.33	5	10.0	5	11;9	y	0.43	3	4.0	3	0;8	n	0.64	8	4.5	8	9;0	n	ENSMUSG00000038323.4	1700066M21Rik	chr1	protein_coding	RIKEN cDNA 1700066M21 gene
known_NIR_809	chr1	57435955	57440547	-	57435955	57440528	A5SS	ENSMUST00000162686.8	known	0.62	8	5	8	5	y	0.70	14	6	14	6	y	0.44	8	10	8	10	y	0.59	10	7	10	7	y	0.62	10	6	10	6	y	0.53	9	8	9	8	y	0.50	8	8	8	8	y	0.36	5	9	5	9	y	0.70	7	3	7	3	y	0.50	7	7	7	7	y	0.46	6	7	6	7	y	0.46	6	7	6	7	y	ENSMUSG00000048495.17	Tyw5	chr1	protein_coding	tRNA-yW synthesizing protein 5
known_NIR_810	chr1	58002420	58004510	-	58002420	58004488	A5SS	ENSMUST00000114410.10	known	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.10	1	9	1	9	n	0.13	2	13	2	13	y	0.00	0	2	0	2	n	0.27	4	11	4	11	y	0.29	2	5	2	5	n	0.40	2	3	2	3	n	0.40	4	6	4	6	y	0.50	3	3	3	3	n	0.09	1	10	1	10	n	ENSMUSG00000054770.17	Kctd18	chr1	protein_coding	potassium channel tetramerisation domain containing 18
known_NIR_811	chr1	58006882	58008566	-	58006882	58009180	A5SS	ENSMUST00000164963.8	known	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.80	4	1	4	1	n	0.30	3	7	3	7	y	0.67	4	2	4	2	n	1.00	4	0	4	0	n	0.67	2	1	2	1	n	0.67	2	1	2	1	n	1.00	4	0	4	0	n	0.57	4	3	4	3	n	1.00	1	0	1	0	n	0.67	2	1	2	1	n	ENSMUSG00000054770.17	Kctd18	chr1	protein_coding	potassium channel tetramerisation domain containing 18
known_NIR_812	chr1	58158212	58158640	+	58157853	58158640	A5SS	ENSMUST00000040999.14	known	0.02	4	182	4	182	y	0.03	2	75	2	75	y	0.00	0	10	0	10	n	0.03	13	387	13	387	y	0.03	15	526	15	526	y	0.06	1	16	1	16	n	0.03	8	282	8	282	y	0.01	1	80	1	80	n	0.02	6	355	6	355	y	0.03	16	560	16	560	y	0.03	10	350	10	350	y	0.03	13	454	13	454	y	ENSMUSG00000064294.13	Aox3	chr1	protein_coding	aldehyde oxidase 3
known_NIR_813	chr1	58453843	58456426	-	58453843	58456172	A5SS	ENSMUST00000135380.2	known	0.02	2	130	2	130	y	0.00	0	114	0	114	n	0.01	1	145	1	145	n	0.00	0	137	0	137	n	0.00	0	181	0	181	n	0.00	0	83	0	83	n	0.01	2	189	2	189	y	0.03	3	91	3	91	y	0.00	0	110	0	110	n	0.01	1	180	1	180	n	0.00	0	123	0	123	n	0.00	0	158	0	158	n	ENSMUSG00000026034.18	Clk1	chr1	protein_coding	CDC-like kinase 1
known_NIR_814	chr1	58453843	58456426	-	58453843;58456338	58456172;58456426	ES	ENSMUST00000156931.8	known	0.01	2	160.5	2	130;191	y	0.00	0	130.0	0	114;146	n	0.01	1	170.5	1	145;196	n	0.00	0	160.5	0	137;184	n	0.00	0	244.5	0	181;308	n	0.00	0	93.0	0	83;103	n	0.01	2	199.5	2	189;210	y	0.03	3	106.0	3	91;121	y	0.00	0	128.5	0	110;147	n	0.00	1	231.5	1	180;283	n	0.00	0	140.5	0	123;158	n	0.00	0	193.5	0	158;229	n	ENSMUSG00000026034.18	Clk1	chr1	protein_coding	CDC-like kinase 1
known_NIR_815	chr1	58453843	58456426	-	58456338	58456426	3pMXE	ENSMUST00000131051.2	known	0.01	2	191	2	191	y	0.00	0	146	0	146	n	0.01	1	196	1	196	n	0.00	0	184	0	184	n	0.00	0	308	0	308	n	0.00	0	103	0	103	n	0.01	2	210	2	210	y	0.02	3	121	3	121	y	0.00	0	147	0	147	n	0.00	1	283	1	283	n	0.00	0	158	0	158	n	0.00	0	229	0	229	n	ENSMUSG00000026034.18	Clk1	chr1	protein_coding	CDC-like kinase 1
known_NIR_816	chr1	58458892	58460242	-	58458892	58459280	5pMXE	ENSMUST00000186552.7	known	0.05	2	40	2	40	y	0.23	7	24	7	24	y	0.09	8	80	8	80	y	0.07	4	54	4	54	y	0.07	5	68	5	68	y	0.03	1	28	1	28	n	0.06	4	65	4	65	y	0.12	6	42	6	42	y	0.19	9	39	9	39	y	0.01	1	88	1	88	n	0.13	5	33	5	33	y	0.11	8	67	8	67	y	ENSMUSG00000026034.18	Clk1	chr1	protein_coding	CDC-like kinase 1
known_NIR_817	chr1	58458892	58460242	-	58458892;58459370	58459280;58460242	ES	ENSMUST00000034868.14	known	0.06	2	33.5	2	40;27	y	0.19	7	29.0	7	24;34	y	0.09	8	83.0	8	80;86	y	0.06	4	65.0	4	54;76	y	0.07	5	64.0	5	68;60	y	0.03	1	32.0	1	28;36	n	0.06	4	59.0	4	65;53	y	0.14	6	37.5	6	42;33	y	0.22	9	31.5	9	39;24	y	0.01	1	81.0	1	88;74	n	0.13	5	34.0	5	33;35	y	0.09	8	84.0	8	67;101	y	ENSMUSG00000026034.18	Clk1	chr1	protein_coding	CDC-like kinase 1
known_NIR_818	chr1	58470489	58471231	-	58470489	58473490	A5SS	ENSMUST00000117069.8	known	0.00	0	42	0	42	n	0.00	0	35	0	35	n	0.00	0	37	0	37	n	0.00	0	44	0	44	n	0.00	0	66	0	66	n	0.00	0	25	0	25	n	0.03	2	57	2	57	y	0.00	0	23	0	23	n	0.00	0	41	0	41	n	0.00	0	74	0	74	n	0.00	0	43	0	43	n	0.02	1	49	1	49	n	ENSMUSG00000026035.16	Ppil3	chr1	protein_coding	peptidylprolyl isomerase (cyclophilin)-like 3
known_NIR_819	chr1	58483798	58484305	-	58483798	58483970	A5SS	ENSMUST00000117069.8	known	1.00	10	0	10	0	n	0.94	16	1	16	1	n	1.00	22	0	22	0	n	0.91	21	2	21	2	y	1.00	24	0	24	0	n	1.00	16	0	16	0	n	1.00	30	0	30	0	n	1.00	16	0	16	0	n	1.00	13	0	13	0	n	0.97	34	1	34	1	n	1.00	25	0	25	0	n	1.00	19	0	19	0	n	ENSMUSG00000026035.16	Ppil3	chr1	protein_coding	peptidylprolyl isomerase (cyclophilin)-like 3
known_NIR_820	chr1	58483798	58484491	-	58483798	58484305	A5SS	ENSMUST00000114348.8	known	0.23	3	10	3	10	y	0.00	0	16	0	16	n	0.12	3	22	3	22	y	0.12	3	21	3	21	y	0.04	1	24	1	24	n	0.06	1	16	1	16	n	0.00	0	30	0	30	n	0.00	0	16	0	16	n	0.19	3	13	3	13	y	0.11	4	34	4	34	y	0.11	3	25	3	25	y	0.21	5	19	5	19	y	ENSMUSG00000026035.16	Ppil3	chr1	protein_coding	peptidylprolyl isomerase (cyclophilin)-like 3
known_NIR_821	chr1	58483798	58484531	-	58483798	58484305	A5SS	ENSMUST00000114348.8	known	0.23	3	10	3	10	y	0.00	0	16	0	16	n	0.00	0	22	0	22	n	0.00	0	21	0	21	n	0.00	0	24	0	24	n	0.00	0	16	0	16	n	0.00	0	30	0	30	n	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.00	0	34	0	34	n	0.00	0	25	0	25	n	0.05	1	19	1	19	n	ENSMUSG00000026035.16	Ppil3	chr1	protein_coding	peptidylprolyl isomerase (cyclophilin)-like 3
known_NIR_822	chr1	58483798	58484569	-	58483798	58483970	A5SS	ENSMUST00000117069.8	known	1.00	9	0	9	0	n	0.91	10	1	10	1	n	1.00	13	0	13	0	n	0.83	10	2	10	2	y	1.00	16	0	16	0	n	-	-	-	-	-	-	1.00	17	0	17	0	n	1.00	10	0	10	0	n	1.00	12	0	12	0	n	0.96	24	1	24	1	n	1.00	14	0	14	0	n	1.00	12	0	12	0	n	ENSMUSG00000026035.16	Ppil3	chr1	protein_coding	peptidylprolyl isomerase (cyclophilin)-like 3
known_NIR_823	chr1	58483798	58484569	-	58483798	58484305	A5SS	ENSMUST00000114348.8	known	0.47	9	10	9	10	y	0.38	10	16	10	16	y	0.37	13	22	13	22	y	0.32	10	21	10	21	y	0.40	16	24	16	24	y	0.00	0	16	0	16	n	0.36	17	30	17	30	y	0.38	10	16	10	16	y	0.48	12	13	12	13	y	0.41	24	34	24	34	y	0.36	14	25	14	25	y	0.39	12	19	12	19	y	ENSMUSG00000026035.16	Ppil3	chr1	protein_coding	peptidylprolyl isomerase (cyclophilin)-like 3
known_NIR_824	chr1	58483798	58484569	-	58483798	58484491	A5SS	ENSMUST00000081677.12	known	0.75	9	3	9	3	y	1.00	10	0	10	0	n	0.81	13	3	13	3	y	0.77	10	3	10	3	y	0.94	16	1	16	1	n	0.00	0	1	0	1	n	1.00	17	0	17	0	n	1.00	10	0	10	0	n	0.80	12	3	12	3	y	0.86	24	4	24	4	y	0.82	14	3	14	3	y	0.71	12	5	12	5	y	ENSMUSG00000026035.16	Ppil3	chr1	protein_coding	peptidylprolyl isomerase (cyclophilin)-like 3
known_NIR_825	chr1	58483798	58484569	-	58483798	58484531	A5SS	ENSMUST00000190048.7	known	0.75	9	3	9	3	y	1.00	10	0	10	0	n	1.00	13	0	13	0	n	1.00	10	0	10	0	n	1.00	16	0	16	0	n	-	-	-	-	-	-	1.00	17	0	17	0	n	1.00	10	0	10	0	n	1.00	12	0	12	0	n	1.00	24	0	24	0	n	1.00	14	0	14	0	n	0.92	12	1	12	1	n	ENSMUSG00000026035.16	Ppil3	chr1	protein_coding	peptidylprolyl isomerase (cyclophilin)-like 3
known_NIR_826	chr1	58497022	58520145	+	58497022	58500300	3pMXE	ENSMUST00000087521.13	known	0.00	0	38	0	38	n	0.00	0	40	0	40	n	0.00	0	37	0	37	n	0.00	0	35	0	35	n	0.00	0	37	0	37	n	0.00	0	18	0	18	n	0.00	0	54	0	54	n	0.00	0	17	0	17	n	0.00	0	49	0	49	n	0.04	2	52	2	52	y	0.00	0	44	0	44	n	0.00	0	42	0	42	n	ENSMUSG00000026036.18	Nif3l1	chr1	protein_coding	Ngg1 interacting factor 3-like 1 (S. pombe)
known_NIR_827	chr1	58541043	58543931	-	58541049	58543931	A3SS	ENSMUST00000027198.12	known	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.36	4	7	4	7	y	0.00	0	2	0	2	n	0.22	4	14	4	14	y	0.00	0	3	0	3	n	0.10	1	9	1	9	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.15	2	11	2	11	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000026037.15	Orc2	chr1	protein_coding	origin recognition complex, subunit 2
known_NIR_828	chr1	58569418;58573811	58573644;58574549	-	58569418	58574549	cassetteExon	ENSMUST00000161600.8	known	0.11	1.0	8	1;1	8	n	0.00	0.0	9	0;0	9	n	0.30	3.5	8	3;4	8	y	0.08	1.0	12	0;2	12	n	0.00	0.0	7	0;0	7	n	0.00	0.0	8	0;0	8	n	0.00	0.0	11	0;0	11	n	0.12	1.0	7	2;0	7	n	0.00	0.0	7	0;0	7	n	0.03	0.5	15	0;1	15	n	0.09	0.5	5	1;0	5	n	0.00	0.0	16	0;0	16	n	ENSMUSG00000038174.15	Fam126b	chr1	protein_coding	family with sequence similarity 126, member B
known_NIR_829	chr1	58750751	58752730	+	58750751	58752455	A3SS	ENSMUST00000149874.8	known	0.90	46	5	46	5	y	0.97	32	1	32	1	n	0.88	60	8	60	8	y	0.91	50	5	50	5	y	0.92	67	6	67	6	y	1.00	55	0	55	0	n	0.98	41	1	41	1	n	0.96	65	3	65	3	y	1.00	31	0	31	0	n	0.94	49	3	49	3	y	1.00	42	0	42	0	n	0.98	60	1	60	1	n	ENSMUSG00000026031.16	Cflar	chr1	protein_coding	CASP8 and FADD-like apoptosis regulator
known_NIR_830	chr1	58752818	58756419	+	58752818	58765465	A3SS	ENSMUST00000140940.8	known	0.02	1	43	1	43	n	0.03	1	34	1	34	n	0.07	4	56	4	56	y	0.02	1	56	1	56	n	0.07	6	79	6	79	y	0.04	2	44	2	44	y	0.00	0	49	0	49	n	0.04	2	55	2	55	y	0.08	4	46	4	46	y	0.12	7	53	7	53	y	0.17	5	25	5	25	y	0.08	4	49	4	49	y	ENSMUSG00000026031.16	Cflar	chr1	protein_coding	CASP8 and FADD-like apoptosis regulator
known_NIR_831	chr1	58752818	58761488	+	58752818	58756419	3pMXE	ENSMUST00000097723.3	known	0.83	5	1	5	1	n	0.88	7	1	7	1	n	0.67	8	4	8	4	y	0.83	5	1	5	1	n	0.65	11	6	11	6	y	0.71	5	2	5	2	n	1.00	8	0	8	0	n	0.75	6	2	6	2	n	0.60	6	4	6	4	y	0.46	6	7	6	7	y	0.58	7	5	7	5	y	0.60	6	4	6	4	y	ENSMUSG00000026031.16	Cflar	chr1	protein_coding	CASP8 and FADD-like apoptosis regulator
known_NIR_832	chr1	58752818	58761488	+	58752818	58765465	A3SS	ENSMUST00000140940.8	known	0.10	5	43	5	43	y	0.17	7	34	7	34	y	0.12	8	56	8	56	y	0.08	5	56	5	56	y	0.12	11	79	11	79	y	0.10	5	44	5	44	y	0.14	8	49	8	49	y	0.10	6	55	6	55	y	0.12	6	46	6	46	y	0.10	6	53	6	53	y	0.22	7	25	7	25	y	0.11	6	49	6	49	y	ENSMUSG00000026031.16	Cflar	chr1	protein_coding	CASP8 and FADD-like apoptosis regulator
known_NIR_833	chr1	58765891;58768320	58768215;58770311	+	58765891	58770311	cassetteExon	ENSMUST00000140940.8	known	0.99	76.0	1	68;84	1	n	0.94	51.0	3	44;58	3	y	0.96	101.5	4	100;103	4	y	0.98	79.0	2	84;74	2	y	0.95	97.0	5	102;92	5	y	0.98	54.5	1	56;53	1	n	0.93	67.5	5	62;73	5	y	0.97	63.0	2	64;62	2	y	0.94	48.5	3	49;48	3	y	0.95	60.0	3	53;67	3	y	1.00	57.0	0	47;67	0	n	0.93	66.0	5	64;68	5	y	ENSMUSG00000026031.16	Cflar	chr1	protein_coding	CASP8 and FADD-like apoptosis regulator
known_NIR_834	chr1	58834897;58843273	58843158;58863074	+	58834897	58863074	cassetteExon	ENSMUST00000027189.15	known	0.06	2.0	31	1;3	31	n	0.03	1.0	38	1;1	38	n	0.02	1.0	50	1;1	50	n	0.12	4.5	34	5;4	34	y	0.01	0.5	46	0;1	46	n	0.00	0.0	20	0;0	20	n	0.10	4.0	37	4;4	37	y	0.05	1.5	26	0;3	26	n	0.00	0.0	25	0;0	25	n	0.04	2.5	64	3;2	64	y	0.01	0.5	46	1;0	46	n	0.03	1.0	33	0;2	33	n	ENSMUSG00000026029.15	Casp8	chr1	protein_coding	caspase 8
known_NIR_835	chr1	58841852	58863074	+	58834897	58863074	A5SS	ENSMUST00000027189.15	known	0.00	0	31	0	31	n	0.00	0	38	0	38	n	0.06	3	50	3	50	y	0.00	0	34	0	34	n	0.00	0	46	0	46	n	0.00	0	20	0	20	n	0.05	2	37	2	37	y	0.07	2	26	2	26	y	0.00	0	25	0	25	n	0.00	0	64	0	64	n	0.00	0	46	0	46	n	0.00	0	33	0	33	n	ENSMUSG00000026029.15	Casp8	chr1	protein_coding	caspase 8
known_NIR_836	chr1	58965886	58985406	-	58965886;58975099	58974905;58985406	ES	ENSMUST00000027186.12	known	0.07	1	14.0	1	12;16	n	0.00	0	11.0	0	13;9	n	0.10	3	26.5	3	41;12	y	0.00	0	21.5	0	28;15	n	0.00	0	23.0	0	24;22	n	0.07	1	14.0	1	16;12	n	0.13	4	26.0	4	24;28	y	0.00	0	19.0	0	19;19	n	0.25	3	9.0	3	9;9	y	0.10	2	17.5	2	22;13	y	0.08	1	11.5	1	15;8	n	0.00	0	20.0	0	20;20	n	ENSMUSG00000026028.13	Trak2	chr1	protein_coding	trafficking protein, kinesin binding 2
known_NIR_837	chr1	59030295;59031534	59031363;59031810	+	59030295	59031810	cassetteExon	ENSMUST00000123301.8	known	0.89	65.5	8	61;70	8	y	0.81	52.0	12	45;59	12	y	0.74	26.0	9	22;30	9	y	0.80	77.5	19	69;86	19	y	0.89	81.0	10	60;102	10	y	0.83	19.5	4	22;17	4	y	0.85	103.5	18	97;110	18	y	0.79	34.0	9	37;31	9	y	0.72	43.5	17	43;44	17	y	0.81	91.5	22	95;88	22	y	0.91	71.5	7	65;78	7	y	0.82	81.0	18	75;87	18	y	ENSMUSG00000026027.14	Stradb	chr1	protein_coding	STE20-related kinase adaptor beta
known_NIR_838	chr1	59259611	59276007	-	59259611	59276314	A5SS	ENSMUST00000027178.13	known	0.05	1	20	1	20	n	0.00	0	1	0	1	n	0.00	0	26	0	26	n	0.12	2	14	2	14	y	0.05	1	20	1	20	n	0.00	0	6	0	6	n	0.00	0	18	0	18	n	0.00	0	18	0	18	n	0.00	0	20	0	20	n	0.10	3	27	3	27	y	0.14	1	6	1	6	n	0.03	1	29	1	29	n	ENSMUSG00000026024.15	Als2	chr1	protein_coding	alsin Rho guanine nucleotide exchange factor
known_NIR_839	chr1	59731548	59735137	+	59731887	59735137	5pMXE	ENSMUST00000185368.2	known	0.86	24	4	24	4	y	0.81	17	4	17	4	y	0.96	89	4	89	4	y	0.89	32	4	32	4	y	0.86	42	7	42	7	y	0.85	23	4	23	4	y	0.90	37	4	37	4	y	1.00	33	0	33	0	n	0.95	18	1	18	1	n	0.84	32	6	32	6	y	0.89	17	2	17	2	y	0.96	24	1	24	1	n	ENSMUSG00000026020.10	Nop58	chr1	protein_coding	NOP58 ribonucleoprotein
known_NIR_840	chr1	59731548;59731887	59731771;59735137	+	59731548	59735137	cassetteExon	ENSMUST00000027174.10	known	0.13	3.5	24	3;4	24	y	0.17	3.5	17	3;4	17	y	0.04	3.5	89	3;4	89	y	0.07	2.5	32	1;4	32	n	0.10	4.5	42	2;7	42	y	0.16	4.5	23	5;4	23	y	0.06	2.5	37	1;4	37	n	0.01	0.5	33	1;0	33	n	0.03	0.5	18	0;1	18	n	0.10	3.5	32	1;6	32	n	0.11	2.0	17	2;2	17	y	0.06	1.5	24	2;1	24	n	ENSMUSG00000026020.10	Nop58	chr1	protein_coding	NOP58 ribonucleoprotein
known_NIR_841	chr1	59746223	59748162	+	59746223	59750430	A3SS	ENSMUST00000027174.10	known	1.00	70	0	70	0	n	1.00	67	0	67	0	n	1.00	150	0	150	0	n	1.00	55	0	55	0	n	0.98	82	2	82	2	y	0.98	54	1	54	1	n	0.98	64	1	64	1	n	1.00	33	0	33	0	n	1.00	32	0	32	0	n	0.98	56	1	56	1	n	1.00	56	0	56	0	n	1.00	84	0	84	0	n	ENSMUSG00000026020.10	Nop58	chr1	protein_coding	NOP58 ribonucleoprotein
known_NIR_842	chr1	59749811	59750430	+	59746223	59750430	A5SS	ENSMUST00000027174.10	known	1.00	51	0	51	0	n	1.00	56	0	56	0	n	1.00	136	0	136	0	n	1.00	43	0	43	0	n	0.98	88	2	88	2	y	0.98	65	1	65	1	n	0.99	84	1	84	1	n	1.00	40	0	40	0	n	1.00	38	0	38	0	n	0.99	67	1	67	1	n	1.00	55	0	55	0	n	1.00	69	0	69	0	n	ENSMUSG00000026020.10	Nop58	chr1	protein_coding	NOP58 ribonucleoprotein
known_NIR_843	chr1	60136886	60137149	-	60136886	60137302	A5SS	ENSMUST00000117438.8	known	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.13	2	13	2	13	y	0.20	1	4	1	4	n	0.00	0	8	0	8	n	ENSMUSG00000026019.16	Wdr12	chr1	protein_coding	WD repeat domain 12
known_NIR_844	chr1	60144593	60148486	+	60147359	60148486	5pMXE	ENSMUST00000027171.12	known	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.25	3	9	3	9	y	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.18	2	9	2	9	y	ENSMUSG00000026017.14	Carf	chr1	protein_coding	calcium response factor
known_NIR_845	chr1	60147359	60148381	+	60147359	60148486	A3SS	ENSMUST00000130075.8	known	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.40	2	3	2	3	n	0.33	1	2	1	2	n	0.18	2	9	2	9	y	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.60	3	2	3	2	n	0.00	0	9	0	9	n	ENSMUSG00000026017.14	Carf	chr1	protein_coding	calcium response factor
known_NIR_846	chr1	60391329	60393673	+	60391329;60392234	60392068;60393673	ES	ENSMUST00000114202.8	known	0.00	0	19.0	0	19;19	n	0.00	0	15.5	0	12;19	n	0.05	2	40.0	2	45;35	y	0.00	0	22.5	0	16;29	n	0.00	0	36.0	0	32;40	n	0.00	0	21.5	0	20;23	n	0.00	0	27.0	0	20;34	n	0.00	0	27.5	0	21;34	n	0.06	1	16.5	1	16;17	n	0.00	0	23.0	0	24;22	n	0.05	1	21.0	1	21;21	n	0.00	0	30.5	0	32;29	n	ENSMUSG00000049439.14	Cyp20a1	chr1	protein_coding	cytochrome P450, family 20, subfamily a, polypeptide 1
known_NIR_847	chr1	60522499	60532697	-	60529480	60532697	A3SS	ENSMUST00000140485.8	known	0.89	128	16	128	16	y	0.94	178	11	178	11	y	0.57	121	91	121	91	y	0.88	90	12	90	12	y	0.81	158	38	158	38	y	0.80	152	38	152	38	y	0.89	125	15	125	15	y	0.84	128	25	128	25	y	0.87	59	9	59	9	y	0.77	79	24	79	24	y	0.86	54	9	54	9	y	0.78	80	23	80	23	y	ENSMUSG00000026014.16	Raph1	chr1	protein_coding	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
known_NIR_848	chr1	60530103	60532697	-	60522499	60532697	A3SS	ENSMUST00000182085.8	known	0.00	0	128	0	128	n	0.01	2	178	2	178	y	0.02	2	121	2	121	y	0.01	1	90	1	90	n	0.00	0	158	0	158	n	0.00	0	152	0	152	n	0.00	0	125	0	125	n	0.00	0	128	0	128	n	0.00	0	59	0	59	n	0.00	0	79	0	79	n	0.00	0	54	0	54	n	0.00	0	80	0	80	n	ENSMUSG00000026014.16	Raph1	chr1	protein_coding	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
known_NIR_849	chr1	60530103	60532697	-	60529480	60532697	A3SS	ENSMUST00000140485.8	known	0.00	0	16	0	16	n	0.15	2	11	2	11	y	0.02	2	91	2	91	y	0.08	1	12	1	12	n	0.00	0	38	0	38	n	0.00	0	38	0	38	n	0.00	0	15	0	15	n	0.00	0	25	0	25	n	0.00	0	9	0	9	n	0.00	0	24	0	24	n	0.00	0	9	0	9	n	0.00	0	23	0	23	n	ENSMUSG00000026014.16	Raph1	chr1	protein_coding	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
known_NIR_850	chr1	60542754	60549576	-	60542754	60564751	A5SS	ENSMUST00000140485.8	known	0.04	6	134	6	134	y	0.05	6	120	6	120	y	0.10	27	246	27	246	y	0.03	3	110	3	110	y	0.03	7	241	7	241	y	0.11	24	194	24	194	y	0.03	6	179	6	179	y	0.05	10	175	10	175	y	0.03	3	115	3	115	y	0.09	9	89	9	89	y	0.04	3	71	3	71	y	0.05	8	167	8	167	y	ENSMUSG00000026014.16	Raph1	chr1	protein_coding	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
known_NIR_851	chr1	60558219	60564751	-	60542754	60564751	A3SS	ENSMUST00000140485.8	known	0.08	12	134	12	134	y	0.06	7	120	7	120	y	0.05	14	246	14	246	y	0.06	7	110	7	110	y	0.06	15	241	15	241	y	0.06	12	194	12	194	y	0.04	8	179	8	179	y	0.05	9	175	9	175	y	0.06	7	115	7	115	y	0.03	3	89	3	89	y	0.01	1	71	1	71	n	0.04	7	167	7	167	y	ENSMUSG00000026014.16	Raph1	chr1	protein_coding	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
known_NIR_852	chr1	62825460	62834868	+	62825460	62854492	A3SS	ENSMUST00000102822.9	known	0.67	2	1	2	1	n	1.00	3	0	3	0	n	0.18	2	9	2	9	y	0.40	2	3	2	3	n	0.50	3	3	3	3	n	0.00	0	1	0	1	n	0.60	3	2	3	2	n	0.60	3	2	3	2	n	0.50	2	2	2	2	n	0.29	2	5	2	5	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	ENSMUSG00000025969.16	Nrp2	chr1	protein_coding	neuropilin 2
known_NIR_853	chr1	62825460	62851693	+	62825460	62834868	3pMXE	ENSMUST00000114155.8	known	0.60	3	2	3	2	n	0.67	6	3	6	3	n	0.87	13	2	13	2	y	0.71	5	2	5	2	n	0.82	14	3	14	3	y	1.00	6	0	6	0	n	0.85	17	3	17	3	y	0.62	5	3	5	3	n	0.60	3	2	3	2	n	0.50	2	2	2	2	n	0.89	8	1	8	1	n	1.00	2	0	2	0	n	ENSMUSG00000025969.16	Nrp2	chr1	protein_coding	neuropilin 2
known_NIR_854	chr1	62825460	62854492	+	62851743	62854492	A5SS&ES	ENSMUST00000114157.3	known	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.38	9	15	9	15	y	0.38	3	5	3	5	n	0.21	3	11	3	11	y	0.12	1	7	1	7	n	0.13	2	13	2	13	y	0.18	2	9	2	9	y	0.50	2	2	2	2	n	0.71	5	2	5	2	n	0.29	2	5	2	5	n	0.50	1	1	1	1	n	ENSMUSG00000025969.16	Nrp2	chr1	protein_coding	neuropilin 2
known_NIR_855	chr1	62825460;62851743	62851693;62854492	+	62825460	62854492	cassetteExon	ENSMUST00000102822.9	known	0.78	3.5	1	3;4	1	n	1.00	5.0	0	6;4	0	n	0.61	14.0	9	13;15	9	y	0.62	5.0	3	5;5	3	y	0.81	12.5	3	14;11	3	y	0.87	6.5	1	6;7	1	n	0.88	15.0	2	17;13	2	y	0.78	7.0	2	5;9	2	y	0.56	2.5	2	3;2	2	n	0.29	2.0	5	2;2	5	n	0.76	6.5	2	8;5	2	y	0.60	1.5	1	2;1	1	n	ENSMUSG00000025969.16	Nrp2	chr1	protein_coding	neuropilin 2
known_NIR_856	chr1	62825475	62851693	+	62825460	62851693	A5SS	ENSMUST00000063594.13	known	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.35	7	13	7	13	y	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.14	1	6	1	6	n	0.15	3	17	3	17	y	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.60	3	2	3	2	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	ENSMUSG00000025969.16	Nrp2	chr1	protein_coding	neuropilin 2
known_NIR_857	chr1	63210073	63214796	-	63210073	63211313	A5SS&ES	ENSMUST00000185827.7	known	0.04	1	27	1	27	n	0.00	0	10	0	10	n	0.04	2	47	2	47	y	0.04	2	49	2	49	y	0.00	0	48	0	48	n	0.00	0	27	0	27	n	0.06	2	30	2	30	y	0.00	0	35	0	35	n	0.00	0	28	0	28	n	0.05	2	38	2	38	y	0.05	1	20	1	20	n	0.03	1	38	1	38	n	ENSMUSG00000025968.17	Ndufs1	chr1	protein_coding	NADH:ubiquinone oxidoreductase core subunit S1
known_NIR_858	chr1	63210073	63214796	-	63210073	63215745	A5SS	ENSMUST00000027111.15	known	0.03	1	31	1	31	n	0.00	0	22	0	22	n	0.05	2	42	2	42	y	0.05	2	38	2	38	y	0.00	0	46	0	46	n	0.00	0	20	0	20	n	0.04	2	53	2	53	y	0.00	0	19	0	19	n	0.00	0	23	0	23	n	0.04	2	54	2	54	y	0.04	1	22	1	22	n	0.02	1	53	1	53	n	ENSMUSG00000025968.17	Ndufs1	chr1	protein_coding	NADH:ubiquinone oxidoreductase core subunit S1
known_NIR_859	chr1	63210073	63215587	-	63210073	63211313	A5SS&ES	ENSMUST00000185827.7	known	0.44	21	27	21	27	y	0.50	10	10	10	10	y	0.34	24	47	24	47	y	0.33	24	49	24	49	y	0.38	29	48	29	48	y	0.31	12	27	12	27	y	0.48	28	30	28	30	y	0.22	10	35	10	35	y	0.40	19	28	19	28	y	0.42	28	38	28	38	y	0.39	13	20	13	20	y	0.41	26	38	26	38	y	ENSMUSG00000025968.17	Ndufs1	chr1	protein_coding	NADH:ubiquinone oxidoreductase core subunit S1
known_NIR_860	chr1	63210073	63215587	-	63210073	63215745	A5SS	ENSMUST00000027111.15	known	0.40	21	31	21	31	y	0.31	10	22	10	22	y	0.36	24	42	24	42	y	0.39	24	38	24	38	y	0.39	29	46	29	46	y	0.38	12	20	12	20	y	0.35	28	53	28	53	y	0.34	10	19	10	19	y	0.45	19	23	19	23	y	0.34	28	54	28	54	y	0.37	13	22	13	22	y	0.33	26	53	26	53	y	ENSMUSG00000025968.17	Ndufs1	chr1	protein_coding	NADH:ubiquinone oxidoreductase core subunit S1
known_NIR_861	chr1	63210073	63215745	-	63210073	63211313	A5SS&ES	ENSMUST00000189664.2	known	0.53	31	27	31	27	y	0.69	22	10	22	10	y	0.47	42	47	42	47	y	0.44	38	49	38	49	y	0.49	46	48	46	48	y	0.43	20	27	20	27	y	0.64	53	30	53	30	y	0.35	19	35	19	35	y	0.45	23	28	23	28	y	0.59	54	38	54	38	y	0.52	22	20	22	20	y	0.58	53	38	53	38	y	ENSMUSG00000025968.17	Ndufs1	chr1	protein_coding	NADH:ubiquinone oxidoreductase core subunit S1
known_NIR_862	chr1	63210073;63211416	63211313;63215587	-	63210073	63215587	cassetteExon	ENSMUST00000168099.9	known	0.45	17.0	21	27;7	21	y	0.46	8.5	10	10;7	10	y	0.55	29.0	24	47;11	24	y	0.54	28.0	24	49;7	24	y	0.53	32.5	29	48;17	29	y	0.58	16.5	12	27;6	12	y	0.41	19.5	28	30;9	28	y	0.71	24.0	10	35;13	10	y	0.49	18.0	19	28;8	19	y	0.47	24.5	28	38;11	28	y	0.53	14.5	13	20;9	13	y	0.50	25.5	26	38;13	26	y	ENSMUSG00000025968.17	Ndufs1	chr1	protein_coding	NADH:ubiquinone oxidoreductase core subunit S1
known_NIR_863	chr1	63210073;63211416	63211313;63215745	-	63210073	63215745	cassetteExon	ENSMUST00000027111.15	known	0.34	16.0	31	27;5	31	y	0.29	9.0	22	10;8	22	y	0.41	29.0	42	47;11	42	y	0.44	29.5	38	49;10	38	y	0.41	32.0	46	48;16	46	y	0.49	19.0	20	27;11	20	y	0.31	24.0	53	30;18	53	y	0.53	21.5	19	35;8	19	y	0.49	22.0	23	28;16	23	y	0.33	26.0	54	38;14	54	y	0.36	12.5	22	20;5	22	y	0.30	23.0	53	38;8	53	y	ENSMUSG00000025968.17	Ndufs1	chr1	protein_coding	NADH:ubiquinone oxidoreductase core subunit S1
known_NIR_864	chr1	63211416	63215587	-	63211416	63215745	A5SS	ENSMUST00000185827.7	known	0.58	7	5	7	5	y	0.47	7	8	7	8	y	0.50	11	11	11	11	y	0.41	7	10	7	10	y	0.52	17	16	17	16	y	0.35	6	11	6	11	y	0.33	9	18	9	18	y	0.62	13	8	13	8	y	0.33	8	16	8	16	y	0.44	11	14	11	14	y	0.64	9	5	9	5	y	0.62	13	8	13	8	y	ENSMUSG00000025968.17	Ndufs1	chr1	protein_coding	NADH:ubiquinone oxidoreductase core subunit S1
known_NIR_865	chr1	63216450	63216882	+	63216450	63216913	A3SS	ENSMUST00000129339.8	known	0.00	2	980	2	980	y	0.01	6	931	6	931	y	0.00	6	1459	6	1459	y	0.00	1	867	1	867	n	0.00	2	1540	2	1540	y	0.00	1	804	1	804	n	0.01	12	1368	12	1368	y	0.01	5	786	5	786	y	0.00	3	719	3	719	y	0.00	5	1147	5	1147	y	0.00	1	1009	1	1009	n	0.00	4	1170	4	1170	y	ENSMUSG00000025967.17	Eef1b2	chr1	protein_coding	eukaryotic translation elongation factor 1 beta 2
known_NIR_866	chr1	63216450	63216882	+	63216450	63217026	A3SS	ENSMUST00000142062.8	known	1.00	2	0	2	0	n	0.60	6	4	6	4	y	1.00	6	0	6	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	n	1.00	1	0	1	0	n	0.75	12	4	12	4	y	1.00	5	0	5	0	n	1.00	3	0	3	0	n	0.62	5	3	5	3	n	1.00	1	0	1	0	n	0.57	4	3	4	3	n	ENSMUSG00000025967.17	Eef1b2	chr1	protein_coding	eukaryotic translation elongation factor 1 beta 2
known_NIR_867	chr1	63216450	63217026	+	63216450	63216913	A3SS	ENSMUST00000129339.8	known	0.00	0	980	0	980	n	0.00	4	931	4	931	y	0.00	0	1459	0	1459	n	0.00	0	867	0	867	n	0.00	0	1540	0	1540	n	0.00	0	804	0	804	n	0.00	4	1368	4	1368	y	0.00	0	786	0	786	n	0.00	0	719	0	719	n	0.00	3	1147	3	1147	y	0.00	0	1009	0	1009	n	0.00	3	1170	3	1170	y	ENSMUSG00000025967.17	Eef1b2	chr1	protein_coding	eukaryotic translation elongation factor 1 beta 2
known_NIR_868	chr1	63216450	63217598	+	63216450	63216913	3pMXE	ENSMUST00000126469.2	known	0.00	2	980	2	980	y	0.00	0	931	0	931	n	0.00	3	1459	3	1459	y	0.00	1	867	1	867	n	0.00	0	1540	0	1540	n	0.00	0	804	0	804	n	0.00	0	1368	0	1368	n	0.00	0	786	0	786	n	0.00	0	719	0	719	n	0.00	0	1147	0	1147	n	0.00	1	1009	1	1009	n	0.00	0	1170	0	1170	n	ENSMUSG00000025967.17	Eef1b2	chr1	protein_coding	eukaryotic translation elongation factor 1 beta 2
known_NIR_869	chr1	63216450	63217598	+	63216450;63217035	63216913;63217598	ES	ENSMUST00000129339.8	known	0.00	2	1068.5	2	980;1157	y	0.00	0	1089.5	0	931;1248	n	0.00	3	1623.0	3	1459;1787	y	0.00	1	1008.5	1	867;1150	n	0.00	0	1663.0	0	1540;1786	n	0.00	0	819.5	0	804;835	n	0.00	0	1558.5	0	1368;1749	n	0.00	0	844.5	0	786;903	n	0.00	0	904.5	0	719;1090	n	0.00	0	1332.5	0	1147;1518	n	0.00	1	1172.0	1	1009;1335	n	0.00	0	1392.0	0	1170;1614	n	ENSMUSG00000025967.17	Eef1b2	chr1	protein_coding	eukaryotic translation elongation factor 1 beta 2
known_NIR_870	chr1	63216450	63217598	+	63217035	63217598	A5SS&ES	ENSMUST00000135877.8	known	0.00	2	1157	2	1157	y	0.00	0	1248	0	1248	n	0.00	3	1787	3	1787	y	0.00	1	1150	1	1150	n	0.00	0	1786	0	1786	n	0.00	0	835	0	835	n	0.00	0	1749	0	1749	n	0.00	0	903	0	903	n	0.00	0	1090	0	1090	n	0.00	0	1518	0	1518	n	0.00	1	1335	1	1335	n	0.00	0	1614	0	1614	n	ENSMUSG00000025967.17	Eef1b2	chr1	protein_coding	eukaryotic translation elongation factor 1 beta 2
known_NIR_871	chr1	63216450;63217035	63216882;63217598	+	63216450	63217598	cassetteExon	ENSMUST00000188524.2	known	1.00	579.5	2	2;1157	2	y	1.00	627.0	0	6;1248	0	n	1.00	896.5	3	6;1787	3	y	1.00	575.5	1	1;1150	1	n	1.00	894.0	0	2;1786	0	n	1.00	418.0	0	1;835	0	n	1.00	880.5	0	12;1749	0	n	1.00	454.0	0	5;903	0	n	1.00	546.5	0	3;1090	0	n	1.00	761.5	0	5;1518	0	n	1.00	668.0	1	1;1335	1	n	1.00	809.0	0	4;1614	0	n	ENSMUSG00000025967.17	Eef1b2	chr1	protein_coding	eukaryotic translation elongation factor 1 beta 2
known_NIR_872	chr1	63217035	63217582	+	63217035	63217598	A3SS	ENSMUST00000129339.8	known	0.00	0	1157	0	1157	n	0.00	6	1248	6	1248	y	0.00	0	1787	0	1787	n	0.00	0	1150	0	1150	n	0.00	0	1786	0	1786	n	0.00	0	835	0	835	n	0.00	4	1749	4	1749	y	0.00	0	903	0	903	n	0.00	0	1090	0	1090	n	0.00	0	1518	0	1518	n	0.00	4	1335	4	1335	y	0.00	5	1614	5	1614	y	ENSMUSG00000025967.17	Eef1b2	chr1	protein_coding	eukaryotic translation elongation factor 1 beta 2
known_NIR_873	chr1	63217035	63217598	+	63217035	63217182	A3SS	ENSMUST00000126795.3	known	1.00	1157	1	1157	1	n	1.00	1248	0	1248	0	n	1.00	1787	0	1787	0	n	1.00	1150	1	1150	1	n	1.00	1786	0	1786	0	n	1.00	835	2	835	2	y	1.00	1749	2	1749	2	y	1.00	903	0	903	0	n	1.00	1090	0	1090	0	n	1.00	1518	1	1518	1	n	1.00	1335	0	1335	0	n	1.00	1614	3	1614	3	y	ENSMUSG00000025967.17	Eef1b2	chr1	protein_coding	eukaryotic translation elongation factor 1 beta 2
known_NIR_874	chr1	63217035;63217423	63217187;63217598	+	63217035	63217598	cassetteExon	ENSMUST00000129339.8	known	0.00	0.0	1157	0;0	1157	n	0.00	0.0	1248	0;0	1248	n	0.00	0.0	1787	0;0	1787	n	0.00	1.0	1150	2;0	1150	n	0.00	4.5	1786	5;4	1786	y	0.00	0.0	835	0;0	835	n	0.00	0.5	1749	1;0	1749	n	0.00	0.0	903	0;0	903	n	0.00	0.0	1090	0;0	1090	n	0.00	1.5	1518	3;0	1518	n	0.00	0.5	1335	1;0	1335	n	0.00	0.0	1614	0;0	1614	n	ENSMUSG00000025967.17	Eef1b2	chr1	protein_coding	eukaryotic translation elongation factor 1 beta 2
known_NIR_875	chr1	6341042	6342925	+	6341051	6342925	A5SS	ENSMUST00000027040.13	known	0.04	3	76	3	76	y	0.06	4	66	4	66	y	0.04	3	76	3	76	y	0.06	4	64	4	64	y	0.13	9	61	9	61	y	0.09	4	41	4	41	y	0.11	9	75	9	75	y	0.02	1	40	1	40	n	0.04	2	51	2	51	y	0.04	4	94	4	94	y	0.07	4	57	4	57	y	0.04	3	73	3	73	y	ENSMUSG00000025907.15	Rb1cc1	chr1	protein_coding	RB1-inducible coiled-coil 1
known_NIR_876	chr1	63612157	63631767	+	63612157;63624614	63624524;63631767	ES	ENSMUST00000087374.10	known	0.21	2	7.5	2	5;10	y	0.16	2	10.5	2	10;11	y	0.27	7	19.0	7	14;24	y	0.00	0	10.0	0	8;12	n	0.22	6	21.0	6	16;26	y	0.08	1	12.0	1	8;16	n	0.37	8	13.5	8	10;17	y	0.17	2	10.0	2	9;11	y	0.09	1	10.0	1	7;13	n	0.13	1	6.5	1	8;5	n	0.00	0	4.5	0	3;6	n	0.50	8	8.0	8	9;7	y	ENSMUSG00000025964.16	Adam23	chr1	protein_coding	a disintegrin and metallopeptidase domain 23
known_NIR_877	chr1	63612157	63631767	+	63624614	63631767	5pMXE	ENSMUST00000141545.3	known	0.17	2	10	2	10	y	0.15	2	11	2	11	y	0.23	7	24	7	24	y	0.00	0	12	0	12	n	0.19	6	26	6	26	y	0.06	1	16	1	16	n	0.32	8	17	8	17	y	0.15	2	11	2	11	y	0.07	1	13	1	13	n	0.17	1	5	1	5	n	0.00	0	6	0	6	n	0.53	8	7	8	7	y	ENSMUSG00000025964.16	Adam23	chr1	protein_coding	a disintegrin and metallopeptidase domain 23
known_NIR_878	chr1	64572179	64590008	+	64572063	64590008	A5SS	ENSMUST00000185594.7	known	1.00	5	0	5	0	n	0.40	2	3	2	3	n	1.00	12	0	12	0	n	0.92	22	2	22	2	y	0.95	19	1	19	1	n	1.00	12	0	12	0	n	1.00	10	0	10	0	n	1.00	12	0	12	0	n	0.75	3	1	3	1	n	0.89	17	2	17	2	y	1.00	15	0	15	0	n	1.00	12	0	12	0	n	ENSMUSG00000025958.15	Creb1	chr1	protein_coding	cAMP responsive element binding protein 1
known_NIR_879	chr1	64597808;64598927	64598886;64605376	+	64597808	64605376	cassetteExon	ENSMUST00000185594.7	known	0.50	1.0	1	1;1	1	n	0.29	2.0	5	4;0	5	n	0.24	3.5	11	2;5	11	y	0.27	1.5	4	2;1	4	n	0.07	1.5	19	3;0	19	n	0.14	1.0	6	1;1	6	n	0.44	5.5	7	6;5	7	y	0.12	1.0	7	0;2	7	n	0.33	1.0	2	1;1	2	n	0.00	0.0	5	0;0	5	n	0.00	0.0	5	0;0	5	n	0.00	0.0	7	0;0	7	n	ENSMUSG00000025958.15	Creb1	chr1	protein_coding	cAMP responsive element binding protein 1
known_NIR_880	chr1	64613414;64614418	64614355;64615338	+	64613414	64615338	cassetteExon	ENSMUST00000185594.7	known	0.03	0.5	15	1;0	15	n	0.00	0.0	6	0;0	6	n	0.14	4.0	25	5;3	25	y	0.00	0.0	9	0;0	9	n	0.12	1.5	11	1;2	11	n	0.22	2.0	7	2;2	7	y	0.08	1.0	12	0;2	12	n	0.14	0.5	3	1;0	3	n	0.00	0.0	15	0;0	15	n	0.05	0.5	9	0;1	9	n	0.14	1.0	6	1;1	6	n	0.60	1.5	1	3;0	1	n	ENSMUSG00000025958.15	Creb1	chr1	protein_coding	cAMP responsive element binding protein 1
known_NIR_881	chr1	64653427	64654257	-	64647296	64654257	A3SS	ENSMUST00000114079.9	known	0.00	0	22	0	22	n	0.00	0	27	0	27	n	0.00	0	37	0	37	n	0.00	0	33	0	33	n	0.03	1	35	1	35	n	0.00	0	21	0	21	n	0.00	0	28	0	28	n	0.00	0	35	0	35	n	0.00	0	22	0	22	n	0.13	5	33	5	33	y	0.04	1	27	1	27	n	0.00	0	43	0	43	n	ENSMUSG00000025956.11	Mettl21a	chr1	protein_coding	methyltransferase like 21A
known_NIR_882	chr1	65214527	65214671	-	65214527	65218149	A5SS	ENSMUST00000097709.11	known	0.00	0	597	0	597	n	0.00	0	308	0	308	n	0.00	0	585	0	585	n	0.00	0	785	0	785	n	0.00	0	1003	0	1003	n	0.00	0	360	0	360	n	0.00	0	673	0	673	n	0.00	0	450	0	450	n	0.00	2	674	2	674	y	0.00	0	1095	0	1095	n	0.00	2	720	2	720	y	0.00	3	1003	3	1003	y	ENSMUSG00000025950.17	Idh1	chr1	protein_coding	isocitrate dehydrogenase 1 (NADP+), soluble
known_NIR_883	chr1	65214527	65214671	-	65214527	65225464	A5SS	ENSMUST00000169032.8	known	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.20	2	8	2	8	y	0.00	0	21	0	21	n	0.33	2	4	2	4	n	0.19	3	13	3	13	y	ENSMUSG00000025950.17	Idh1	chr1	protein_coding	isocitrate dehydrogenase 1 (NADP+), soluble
known_NIR_884	chr1	65214527	65218922	-	65214527	65218149	5pMXE	ENSMUST00000097709.11	known	0.01	4	597	4	597	y	0.00	1	308	1	308	n	0.00	1	585	1	585	n	0.01	8	785	8	785	y	0.01	10	1003	10	1003	y	0.00	0	360	0	360	n	0.00	0	673	0	673	n	0.01	3	450	3	450	y	0.00	0	674	0	674	n	0.01	8	1095	8	1095	y	0.01	4	720	4	720	y	0.00	3	1003	3	1003	y	ENSMUSG00000025950.17	Idh1	chr1	protein_coding	isocitrate dehydrogenase 1 (NADP+), soluble
known_NIR_885	chr1	65214527	65218922	-	65214527	65225464	A5SS	ENSMUST00000169032.8	known	0.31	4	9	4	9	y	0.17	1	5	1	5	n	0.09	1	10	1	10	n	0.53	8	7	8	7	y	0.48	10	11	10	11	y	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.50	3	3	3	3	n	0.00	0	8	0	8	n	0.28	8	21	8	21	y	0.50	4	4	4	4	n	0.19	3	13	3	13	y	ENSMUSG00000025950.17	Idh1	chr1	protein_coding	isocitrate dehydrogenase 1 (NADP+), soluble
known_NIR_886	chr1	65214527	65220787	-	65214527	65218149	5pMXE	ENSMUST00000097709.11	known	0.00	2	597	2	597	y	0.00	1	308	1	308	n	0.01	3	585	3	585	y	0.01	5	785	5	785	y	0.00	3	1003	3	1003	y	0.01	2	360	2	360	y	0.00	2	673	2	673	y	0.00	0	450	0	450	n	0.01	4	674	4	674	y	0.01	9	1095	9	1095	y	0.00	3	720	3	720	y	0.01	6	1003	6	1003	y	ENSMUSG00000025950.17	Idh1	chr1	protein_coding	isocitrate dehydrogenase 1 (NADP+), soluble
known_NIR_887	chr1	65214527	65220787	-	65214527	65218922	A5SS&ES	ENSMUST00000186222.7	known	0.33	2	4	2	4	n	0.50	1	1	1	1	n	0.75	3	1	3	1	n	0.38	5	8	5	8	y	0.23	3	10	3	10	y	1.00	2	0	2	0	n	1.00	2	0	2	0	n	0.00	0	3	0	3	n	1.00	4	0	4	0	n	0.53	9	8	9	8	y	0.43	3	4	3	4	n	0.67	6	3	6	3	n	ENSMUSG00000025950.17	Idh1	chr1	protein_coding	isocitrate dehydrogenase 1 (NADP+), soluble
known_NIR_888	chr1	65214527	65225464	-	65214527	65218149	5pMXE	ENSMUST00000097709.11	known	0.01	9	597	9	597	y	0.02	5	308	5	308	y	0.02	10	585	10	585	y	0.01	7	785	7	785	y	0.01	11	1003	11	1003	y	0.03	12	360	12	360	y	0.01	6	673	6	673	y	0.01	3	450	3	450	y	0.01	8	674	8	674	y	0.02	21	1095	21	1095	y	0.01	4	720	4	720	y	0.01	13	1003	13	1003	y	ENSMUSG00000025950.17	Idh1	chr1	protein_coding	isocitrate dehydrogenase 1 (NADP+), soluble
known_NIR_889	chr1	65214527;65218974	65218922;65220787	-	65214527	65220787	cassetteExon	ENSMUST00000188876.7	known	0.56	2.5	2	4;1	2	n	0.33	0.5	1	1;0	1	n	0.14	0.5	3	1;0	3	n	0.44	4.0	5	8;0	5	n	0.65	5.5	3	10;1	3	n	0.00	0.0	2	0;0	2	n	0.00	0.0	2	0;0	2	n	1.00	1.5	0	3;0	0	n	0.00	0.0	4	0;0	4	n	0.38	5.5	9	8;3	9	y	0.54	3.5	3	4;3	3	y	0.20	1.5	6	3;0	6	n	ENSMUSG00000025950.17	Idh1	chr1	protein_coding	isocitrate dehydrogenase 1 (NADP+), soluble
known_NIR_890	chr1	65214527;65220857	65220787;65225464	-	65214527	65225464	cassetteExon	ENSMUST00000169032.8	known	0.18	2.0	9	2;2	9	y	0.23	1.5	5	1;2	5	n	0.20	2.5	10	3;2	10	y	0.39	4.5	7	5;4	7	y	0.31	5.0	11	3;7	11	y	0.14	2.0	12	2;2	12	y	0.14	1.0	6	2;0	6	n	0.33	1.5	3	0;3	3	n	0.33	4.0	8	4;4	8	y	0.28	8.0	21	9;7	21	y	0.43	3.0	4	3;3	4	y	0.30	5.5	13	6;5	13	y	ENSMUSG00000025950.17	Idh1	chr1	protein_coding	isocitrate dehydrogenase 1 (NADP+), soluble
known_NIR_891	chr1	65225992	65229478	+	65225937	65229478	A5SS	ENSMUST00000185317.7	known	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.60	3	2	3	2	n	1.00	4	0	4	0	n	0.60	3	2	3	2	n	0.00	0	1	0	1	n	0.60	6	4	6	4	y	1.00	1	0	1	0	n	0.25	1	3	1	3	n	0.50	3	3	3	3	n	0.75	3	1	3	1	n	0.88	7	1	7	1	n	ENSMUSG00000025949.17	Pikfyve	chr1	protein_coding	phosphoinositide kinase, FYVE type zinc finger containing
known_NIR_892	chr1	65262811	65269953	+	65262811;65263488	65263321;65269953	ES	ENSMUST00000190058.7	known	0.57	2	1.5	2	0;3	n	-	-	-	-	-	-	0.33	2	4.0	2	4;4	y	0.40	1	1.5	1	2;1	n	0.25	1	3.0	1	4;2	n	0.50	1	1.0	1	1;1	n	0.80	4	1.0	4	1;1	n	0.36	2	3.5	2	5;2	n	0.00	0	1.5	0	3;0	n	0.20	1	4.0	1	2;6	n	0.50	1	1.0	1	0;2	n	0.53	5	4.5	5	4;5	y	ENSMUSG00000025949.17	Pikfyve	chr1	protein_coding	phosphoinositide kinase, FYVE type zinc finger containing
known_NIR_893	chr1	66740187	66745605	+	66740807	66745605	A5SS&ES	ENSMUST00000151016.2	known	0.93	56	4	56	4	y	0.85	33	6	33	6	y	0.92	61	5	61	5	y	0.86	57	9	57	9	y	0.91	72	7	72	7	y	0.96	23	1	23	1	n	0.96	48	2	48	2	y	0.88	36	5	36	5	y	0.85	39	7	39	7	y	0.93	51	4	51	4	y	0.86	38	6	38	6	y	0.91	61	6	61	6	y	ENSMUSG00000026005.16	Rpe	chr1	protein_coding	ribulose-5-phosphate-3-epimerase
known_NIR_894	chr1	66740187;66740807	66740776;66745605	+	66740187	66745605	cassetteExon	ENSMUST00000027157.10	known	0.03	2.0	56	0;4	56	n	0.08	3.0	33	0;6	33	n	0.04	2.5	61	0;5	61	n	0.07	4.5	57	0;9	57	n	0.05	3.5	72	0;7	72	n	0.02	0.5	23	0;1	23	n	0.02	1.0	48	0;2	48	n	0.09	3.5	36	2;5	36	y	0.09	4.0	39	1;7	39	n	0.04	2.0	51	0;4	51	n	0.07	3.0	38	0;6	38	n	0.05	3.0	61	0;6	61	n	ENSMUSG00000026005.16	Rpe	chr1	protein_coding	ribulose-5-phosphate-3-epimerase
known_NIR_895	chr1	66765967	66774796	-	66765967;66767734	66767603;66774796	ES	ENSMUST00000129190.8	known	0.50	4	4.0	4	3;5	y	0.67	4	2.0	4	2;2	n	0.73	4	1.5	4	0;3	n	0.32	4	8.5	4	9;8	y	0.61	7	4.5	7	3;6	y	0.00	0	1.5	0	0;3	n	0.62	4	2.5	4	1;4	n	0.53	5	4.5	5	2;7	y	0.00	0	4.0	0	4;4	n	0.29	2	5.0	2	4;6	y	0.63	6	3.5	6	2;5	y	0.57	8	6.0	8	5;7	y	ENSMUSG00000026004.16	Kansl1l	chr1	protein_coding	KAT8 regulatory NSL complex subunit 1-like
known_NIR_896	chr1	66812778	66817126	-	66812673	66817126	A3SS	ENSMUST00000129190.8	known	0.57	8	6	8	6	y	0.46	6	7	6	7	y	0.38	3	5	3	5	n	0.53	8	7	8	7	y	0.61	11	7	11	7	y	0.00	0	6	0	6	n	0.47	7	8	7	8	y	0.60	3	2	3	2	n	0.33	3	6	3	6	n	0.64	14	8	14	8	y	0.36	4	7	4	7	y	0.45	5	6	5	6	y	ENSMUSG00000026004.16	Kansl1l	chr1	protein_coding	KAT8 regulatory NSL complex subunit 1-like
known_NIR_897	chr1	66841327	66846684	-	66841327	66856533	A5SS	ENSMUST00000068168.10	known	0.36	4	7	4	7	y	0.75	3	1	3	1	n	0.25	1	3	1	3	n	0.50	3	3	3	3	n	0.75	3	1	3	1	n	0.67	4	2	4	2	n	0.00	0	1	0	1	n	0.17	1	5	1	5	n	0.00	0	8	0	8	n	0.25	2	6	2	6	n	0.00	0	5	0	5	n	0.36	5	9	5	9	y	ENSMUSG00000026004.16	Kansl1l	chr1	protein_coding	KAT8 regulatory NSL complex subunit 1-like
known_NIR_898	chr1	66969488	66973677	-	66969488	66973405	A5SS&ES	ENSMUST00000027151.12	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.51	183	173	183	173	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061816.16	Myl1	chr1	protein_coding	myosin, light polypeptide 1
known_NIR_899	chr1	67048533	67060017	-	67048533;67049205	67049070;67060017	ES	ENSMUST00000027149.12	known	0.00	0	58.0	0	59;57	n	0.09	5	51.5	5	55;48	y	0.03	2	73.5	2	85;62	y	0.04	3	69.0	3	80;58	y	0.00	0	81.0	0	76;86	n	0.02	1	59.5	1	66;53	n	0.02	2	79.0	2	94;64	y	0.00	0	37.0	0	42;32	n	0.03	2	59.5	2	69;50	y	0.00	0	80.5	0	90;71	n	0.09	5	48.5	5	61;36	y	0.02	2	106.5	2	93;120	y	ENSMUSG00000026000.17	Lancl1	chr1	protein_coding	LanC (bacterial lantibiotic synthetase component C)-like 1
known_NIR_900	chr1	67048533	67060017	-	67049205	67060017	3pMXE	ENSMUST00000149996.2	known	0.00	0	57	0	57	n	0.09	5	48	5	48	y	0.03	2	62	2	62	y	0.05	3	58	3	58	y	0.00	0	86	0	86	n	0.02	1	53	1	53	n	0.03	2	64	2	64	y	0.00	0	32	0	32	n	0.04	2	50	2	50	y	0.00	0	71	0	71	n	0.12	5	36	5	36	y	0.02	2	120	2	120	y	ENSMUSG00000026000.17	Lancl1	chr1	protein_coding	LanC (bacterial lantibiotic synthetase component C)-like 1
known_NIR_901	chr1	67077750	67077931	-	67077750	67077935	A5SS	ENSMUST00000027149.12	known	0.00	0	17	0	17	n	0.22	2	7	2	7	n	0.11	4	32	4	32	y	0.12	3	23	3	23	y	0.06	2	32	2	32	y	0.00	0	25	0	25	n	0.18	3	14	3	14	y	0.00	0	17	0	17	n	0.12	2	14	2	14	y	0.06	2	31	2	31	y	0.06	1	15	1	15	n	0.12	3	22	3	22	y	ENSMUSG00000026000.17	Lancl1	chr1	protein_coding	LanC (bacterial lantibiotic synthetase component C)-like 1
known_NIR_902	chr1	7159440	7217861	+	7159440;7190839	7190418;7217861	ES	ENSMUST00000061280.17	known	0.04	2	45.0	2	22;68	y	0.11	3	23.5	3	15;32	y	0.00	0	58.0	0	22;94	n	0.03	3	84.0	3	46;122	y	0.00	0	96.5	0	49;144	n	0.00	0	34.0	0	21;47	n	0.02	1	65.0	1	33;97	n	0.04	2	55.0	2	28;82	y	0.00	0	54.0	0	25;83	n	0.01	1	95.5	1	49;142	n	0.02	1	52.0	1	35;69	n	0.02	2	98.0	2	65;131	y	ENSMUSG00000051285.18	Pcmtd1	chr1	protein_coding	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1
known_NIR_903	chr1	71636546	71637533	-	71636831	71637533	A3SS	ENSMUST00000187938.7	known	0.63	1417	834	1417	834	y	0.65	1498	794	1498	794	y	0.48	1638	1803	1638	1803	y	0.62	1376	861	1376	861	y	0.55	1898	1551	1898	1551	y	0.52	1126	1024	1126	1024	y	0.59	1736	1192	1736	1192	y	0.51	1208	1160	1208	1160	y	0.62	877	537	877	537	y	0.61	1411	896	1411	896	y	0.59	931	635	931	635	y	0.61	1174	755	1174	755	y	ENSMUSG00000026193.16	Fn1	chr1	protein_coding	fibronectin 1
known_NIR_904	chr1	71636546	71637533	-	71636906	71637533	A3SS	ENSMUST00000188894.7	known	0.77	1417	429	1417	429	y	0.76	1498	484	1498	484	y	0.33	1638	3358	1638	3358	y	0.74	1376	491	1376	491	y	0.58	1898	1375	1898	1375	y	0.39	1126	1769	1126	1769	y	0.60	1736	1154	1736	1154	y	0.45	1208	1455	1208	1455	y	0.70	877	371	877	371	y	0.66	1411	737	1411	737	y	0.71	931	376	931	376	y	0.70	1174	509	1174	509	y	ENSMUSG00000026193.16	Fn1	chr1	protein_coding	fibronectin 1
known_NIR_905	chr1	71636546;71636831	71636801;71637533	-	71636546	71637533	cassetteExon	ENSMUST00000188674.7	known	0.23	423.0	1417	12;834	1417	y	0.21	403.5	1498	13;794	1498	y	0.36	930.5	1638	58;1803	1638	y	0.24	430.5	1376	0;861	1376	n	0.29	780.0	1898	9;1551	1898	y	0.32	539.5	1126	55;1024	1126	y	0.26	616.5	1736	41;1192	1736	y	0.33	602.0	1208	44;1160	1208	y	0.24	272.5	877	8;537	877	y	0.25	461.5	1411	27;896	1411	y	0.26	322.0	931	9;635	931	y	0.25	385.5	1174	16;755	1174	y	ENSMUSG00000026193.16	Fn1	chr1	protein_coding	fibronectin 1
known_NIR_906	chr1	71636546;71636906	71636801;71637533	-	71636546	71637533	cassetteExon	ENSMUST00000188674.7	known	0.13	220.5	1417	12;429	1417	y	0.14	248.5	1498	13;484	1498	y	0.51	1708.0	1638	58;3358	1638	y	0.15	245.5	1376	0;491	1376	n	0.27	692.0	1898	9;1375	1898	y	0.45	912.0	1126	55;1769	1126	y	0.26	597.5	1736	41;1154	1736	y	0.38	749.5	1208	44;1455	1208	y	0.18	189.5	877	8;371	877	y	0.21	382.0	1411	27;737	1411	y	0.17	192.5	931	9;376	931	y	0.18	262.5	1174	16;509	1174	y	ENSMUSG00000026193.16	Fn1	chr1	protein_coding	fibronectin 1
known_NIR_907	chr1	71636831	71637533	-	71636906	71637533	A3SS	ENSMUST00000188894.7	known	0.66	834	429	834	429	y	0.62	794	484	794	484	y	0.35	1803	3358	1803	3358	y	0.64	861	491	861	491	y	0.53	1551	1375	1551	1375	y	0.37	1024	1769	1024	1769	y	0.51	1192	1154	1192	1154	y	0.44	1160	1455	1160	1455	y	0.59	537	371	537	371	y	0.55	896	737	896	737	y	0.63	635	376	635	376	y	0.60	755	509	755	509	y	ENSMUSG00000026193.16	Fn1	chr1	protein_coding	fibronectin 1
known_NIR_908	chr1	71641656	71644129	-	71641656;71643088	71642819;71644129	ES	ENSMUST00000188894.7	known	1.00	1816	5.5	1816	5;6	y	1.00	1439	5.0	1439	6;4	y	0.98	4455	103.0	4455	117;89	y	1.00	1953	6.0	1953	10;2	y	0.99	3754	27.0	3754	30;24	y	0.98	2634	63.5	2634	70;57	y	0.99	2467	19.5	2467	27;12	y	0.99	2664	32.0	2664	41;23	y	1.00	1141	3.5	1141	4;3	y	1.00	1955	6.5	1955	7;6	y	1.00	1168	2.5	1168	2;3	y	1.00	1610	6.5	1610	8;5	y	ENSMUSG00000026193.16	Fn1	chr1	protein_coding	fibronectin 1
known_NIR_909	chr1	71651809;71653194	71652922;71654519	-	71651809	71654519	cassetteExon	ENSMUST00000188894.7	known	0.00	1.0	1269	2;0	1269	n	0.00	3.5	925	3;4	925	y	0.01	38.0	3790	33;43	3790	y	0.00	3.0	1735	0;6	1735	n	0.00	5.5	3073	6;5	3073	y	0.01	20.0	2257	21;19	2257	y	0.00	5.5	1928	8;3	1928	y	0.01	14.5	2680	14;15	2680	y	0.00	1.0	885	0;2	885	n	0.00	1.5	1620	3;0	1620	n	0.00	0.0	822	0;0	822	n	0.00	2.0	1331	2;2	1331	y	ENSMUSG00000026193.16	Fn1	chr1	protein_coding	fibronectin 1
known_NIR_910	chr1	71671274	71680311	-	71679603	71680311	A3SS&ES	ENSMUST00000188894.7	known	0.00	0	461	0	461	n	0.00	0	253	0	253	n	0.01	20	1946	20	1946	y	0.00	0	894	0	894	n	0.01	18	1559	18	1559	y	0.01	12	1134	12	1134	y	0.00	0	785	0	785	n	0.00	0	1381	0	1381	n	0.00	0	336	0	336	n	0.00	0	801	0	801	n	0.00	0	339	0	339	n	0.00	0	595	0	595	n	ENSMUSG00000026193.16	Fn1	chr1	protein_coding	fibronectin 1
known_NIR_911	chr1	71688484	71689721	-	71688484	71691991	A5SS	ENSMUST00000186736.2	known	1.00	415	0	415	0	n	1.00	243	0	243	0	n	1.00	1851	2	1851	2	y	1.00	810	0	810	0	n	1.00	1555	0	1555	0	n	1.00	1040	0	1040	0	n	1.00	761	0	761	0	n	1.00	1346	0	1346	0	n	1.00	315	0	315	0	n	1.00	726	1	726	1	n	1.00	307	0	307	0	n	1.00	564	0	564	0	n	ENSMUSG00000026193.16	Fn1	chr1	protein_coding	fibronectin 1
known_NIR_912	chr1	71690808	71691991	-	71688484	71691991	A3SS	ENSMUST00000186736.2	known	1.00	320	0	320	0	n	1.00	192	0	192	0	n	1.00	1736	2	1736	2	y	1.00	689	0	689	0	n	1.00	1350	0	1350	0	n	1.00	1007	0	1007	0	n	1.00	639	0	639	0	n	1.00	1287	0	1287	0	n	1.00	274	0	274	0	n	1.00	612	1	612	1	n	1.00	246	0	246	0	n	1.00	485	0	485	0	n	ENSMUSG00000026193.16	Fn1	chr1	protein_coding	fibronectin 1
known_NIR_913	chr1	71927680	71927778	+	71927360	71927778	A5SS	ENSMUST00000189680.7	known	0.84	162	32	162	32	y	0.84	251	47	251	47	y	0.91	459	48	459	48	y	0.86	189	32	189	32	y	0.90	386	41	386	41	y	0.85	267	47	267	47	y	0.87	295	43	295	43	y	0.89	233	28	233	28	y	0.85	182	31	182	31	y	0.91	314	30	314	30	y	0.89	198	25	198	25	y	0.85	180	31	180	31	y	ENSMUSG00000099707.7	Gm8883	chr1	lncRNA	predicted gene 8883
known_NIR_914	chr1	71927873	71928791	+	71927873	71929851	A3SS	ENSMUST00000189680.7	known	0.82	23	5	23	5	y	0.66	31	16	31	16	y	0.70	62	26	62	26	y	0.44	14	18	14	18	y	0.64	49	28	49	28	y	0.79	50	13	50	13	y	0.67	44	22	44	22	y	0.82	51	11	51	11	y	0.50	15	15	15	15	y	0.55	30	25	30	25	y	0.76	26	8	26	8	y	0.45	20	24	20	24	y	ENSMUSG00000099707.7	Gm8883	chr1	lncRNA	predicted gene 8883
known_NIR_915	chr1	71927873	71929463	+	71927873	71928791	3pMXE	ENSMUST00000187594.7	known	0.87	157	23	157	23	y	0.87	213	31	213	31	y	0.86	394	62	394	62	y	0.92	152	14	152	14	y	0.85	285	49	285	49	y	0.83	243	50	243	50	y	0.86	280	44	280	44	y	0.79	195	51	195	51	y	0.92	168	15	168	15	y	0.90	263	30	263	30	y	0.88	198	26	198	26	y	0.90	189	20	189	20	y	ENSMUSG00000099707.7	Gm8883	chr1	lncRNA	predicted gene 8883
known_NIR_916	chr1	71927873	71929463	+	71927873	71929851	A3SS	ENSMUST00000189680.7	known	0.97	157	5	157	5	y	0.93	213	16	213	16	y	0.94	394	26	394	26	y	0.89	152	18	152	18	y	0.91	285	28	285	28	y	0.95	243	13	243	13	y	0.93	280	22	280	22	y	0.95	195	11	195	11	y	0.92	168	15	168	15	y	0.91	263	25	263	25	y	0.96	198	8	198	8	y	0.89	189	24	189	24	y	ENSMUSG00000099707.7	Gm8883	chr1	lncRNA	predicted gene 8883
known_NIR_917	chr1	7217963	7231116	+	7225495	7231116	5pMXE	ENSMUST00000182388.8	known	0.97	68	2	68	2	y	0.95	40	2	40	2	y	0.98	108	2	108	2	y	1.00	125	0	125	0	n	1.00	156	0	156	0	n	1.00	59	0	59	0	n	1.00	112	0	112	0	n	0.99	78	1	78	1	n	1.00	94	0	94	0	n	1.00	155	0	155	0	n	0.98	88	2	88	2	y	0.99	170	2	170	2	y	ENSMUSG00000051285.18	Pcmtd1	chr1	protein_coding	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1
known_NIR_918	chr1	72306329	72306566	-	72301222	72306566	A3SS	ENSMUST00000134840.8	known	0.03	20	716	20	716	y	0.01	11	738	11	738	y	0.02	5	242	5	242	y	0.02	15	729	15	729	y	0.02	11	679	11	679	y	0.01	2	211	2	211	y	0.01	11	844	11	844	y	0.02	5	273	5	273	y	0.02	11	646	11	646	y	0.01	9	964	9	964	y	0.01	10	915	10	915	y	0.01	10	778	10	778	y	ENSMUSG00000026189.14	Pecr	chr1	protein_coding	peroxisomal trans-2-enoyl-CoA reductase
known_NIR_919	chr1	72622896	72624797	+	72622597	72624797	A5SS	ENSMUST00000133123.8	known	0.00	0	10	0	10	n	0.09	1	10	1	10	n	0.22	2	7	2	7	n	0.09	2	20	2	20	y	0.00	0	23	0	23	n	0.00	0	10	0	10	n	0.24	7	22	7	22	y	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.12	3	21	3	21	y	0.18	2	9	2	9	y	0.20	6	24	6	24	y	ENSMUSG00000039354.17	Smarcal1	chr1	protein_coding	SWI/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1
known_NIR_920	chr1	72751383;72752498	72752341;72752661	+	72751383	72752661	cassetteExon	ENSMUST00000059980.11	known	0.00	3.0	2234	0;6	2234	n	0.00	1.5	2613	1;2	2613	n	0.00	0.5	2649	0;1	2649	n	0.00	0.0	1778	0;0	1778	n	0.00	0.5	3004	1;0	3004	n	0.00	0.5	1575	1;0	1575	n	0.00	3.0	2972	4;2	2972	y	0.00	0.5	1574	0;1	1574	n	0.00	0.5	1853	0;1	1853	n	0.00	0.0	2610	0;0	2610	n	0.00	2.0	2490	4;0	2490	n	0.00	2.0	2541	0;4	2541	n	ENSMUSG00000046330.11	Rpl37a	chr1	protein_coding	ribosomal protein L37a
known_NIR_921	chr1	72864633	72888245	+	72864123	72888245	A5SS	ENSMUST00000047328.11	known	0.01	3	443	3	443	y	0.01	3	537	3	537	y	0.00	0	99	0	99	n	0.00	0	579	0	579	n	0.00	1	836	1	836	n	0.00	0	71	0	71	n	0.00	2	582	2	582	y	0.00	0	125	0	125	n	0.01	7	688	7	688	y	0.01	5	879	5	879	y	0.00	2	843	2	843	y	0.01	9	911	9	911	y	ENSMUSG00000039323.19	Igfbp2	chr1	protein_coding	insulin-like growth factor binding protein 2
known_NIR_922	chr1	73959755	73960117	-	73959758	73960117	A3SS	ENSMUST00000169786.8	known	0.00	0	69	0	69	n	0.00	0	58	0	58	n	0.00	0	83	0	83	n	0.00	0	57	0	57	n	0.02	2	109	2	109	y	0.00	0	50	0	50	n	0.00	0	91	0	91	n	0.00	0	56	0	56	n	0.00	0	68	0	68	n	0.00	0	76	0	76	n	0.00	0	64	0	64	n	0.00	0	72	0	72	n	ENSMUSG00000055322.17	Tns1	chr1	protein_coding	tensin 1
known_NIR_923	chr1	73967269	73969476	-	73967269	73976384	A5SS	ENSMUST00000187584.7	known	0.00	0	35	0	35	n	0.00	0	32	0	32	n	0.13	4	27	4	27	y	0.00	0	31	0	31	n	0.02	1	64	1	64	n	0.07	2	27	2	27	y	0.00	0	48	0	48	n	0.10	3	27	3	27	y	0.00	0	28	0	28	n	0.03	1	35	1	35	n	0.00	0	18	0	18	n	0.02	1	44	1	44	n	ENSMUSG00000055322.17	Tns1	chr1	protein_coding	tensin 1
known_NIR_924	chr1	73967269	73969922	-	73967269	73976384	A5SS	ENSMUST00000187584.7	known	0.00	0	35	0	35	n	0.00	0	32	0	32	n	0.00	0	27	0	27	n	0.06	2	31	2	31	y	0.00	0	64	0	64	n	0.04	1	27	1	27	n	0.00	0	48	0	48	n	0.00	0	27	0	27	n	0.00	0	28	0	28	n	0.05	2	35	2	35	y	0.00	0	18	0	18	n	0.02	1	44	1	44	n	ENSMUSG00000055322.17	Tns1	chr1	protein_coding	tensin 1
known_NIR_925	chr1	73967269;73975095	73975057;73976384	-	73967269	73976384	cassetteExon	ENSMUST00000187584.7	known	0.00	0.0	35	0;0	35	n	0.00	0.0	32	0;0	32	n	0.05	1.5	27	2;1	27	n	0.06	2.0	31	2;2	31	y	0.00	0.0	64	0;0	64	n	0.00	0.0	27	0;0	27	n	0.15	8.5	48	9;8	48	y	0.00	0.0	27	0;0	27	n	0.00	0.0	28	0;0	28	n	0.00	0.0	35	0;0	35	n	0.00	0.0	18	0;0	18	n	0.00	0.0	44	0;0	44	n	ENSMUSG00000055322.17	Tns1	chr1	protein_coding	tensin 1
known_NIR_926	chr1	73993109	74002070	-	73993109	74020073	A5SS	ENSMUST00000169786.8	known	0.00	0	32	0	32	n	0.00	0	22	0	22	n	0.00	0	22	0	22	n	0.00	0	31	0	31	n	0.00	0	58	0	58	n	0.00	0	16	0	16	n	0.18	12	55	12	55	y	0.00	0	28	0	28	n	0.00	0	39	0	39	n	0.00	0	26	0	26	n	0.00	0	41	0	41	n	0.00	0	30	0	30	n	ENSMUSG00000055322.17	Tns1	chr1	protein_coding	tensin 1
known_NIR_927	chr1	74036263	74037404	-	74036263	74041446	A5SS	ENSMUST00000169786.8	known	0.00	0	29	0	29	n	0.00	0	19	0	19	n	0.04	1	26	1	26	n	0.03	1	33	1	33	n	0.00	0	55	0	55	n	0.00	0	17	0	17	n	0.04	2	43	2	43	y	0.07	2	28	2	28	y	0.00	0	22	0	22	n	0.07	4	57	4	57	y	0.00	0	25	0	25	n	0.00	0	31	0	31	n	ENSMUSG00000055322.17	Tns1	chr1	protein_coding	tensin 1
known_NIR_928	chr1	74036263	74040607	-	74036263	74041446	A5SS	ENSMUST00000169786.8	known	0.00	0	29	0	29	n	0.00	0	19	0	19	n	0.07	2	26	2	26	y	0.00	0	33	0	33	n	0.00	0	55	0	55	n	0.00	0	17	0	17	n	0.02	1	43	1	43	n	0.00	0	28	0	28	n	0.00	0	22	0	22	n	0.00	0	57	0	57	n	0.00	0	25	0	25	n	0.00	0	31	0	31	n	ENSMUSG00000055322.17	Tns1	chr1	protein_coding	tensin 1
known_NIR_929	chr1	74055345	74055557	-	74055345	74107768	A5SS	ENSMUST00000169786.8	known	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.21	4	15	4	15	y	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.00	0	35	0	35	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	ENSMUSG00000055322.17	Tns1	chr1	protein_coding	tensin 1
known_NIR_930	chr1	74055345	74076130	-	74055345	74055557	5pMXE	ENSMUST00000186381.7	known	1.00	3	0	3	0	n	-	-	-	-	-	-	1.00	3	0	3	0	n	-	-	-	-	-	-	0.60	6	4	6	4	y	-	-	-	-	-	-	1.00	3	0	3	0	n	1.00	2	0	2	0	n	1.00	2	0	2	0	n	1.00	2	0	2	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000055322.17	Tns1	chr1	protein_coding	tensin 1
known_NIR_931	chr1	74055345	74076130	-	74055345	74107768	A5SS	ENSMUST00000169786.8	known	0.30	3	7	3	7	y	0.00	0	5	0	5	n	0.21	3	11	3	11	y	0.00	0	16	0	16	n	0.29	6	15	6	15	y	0.00	0	6	0	6	n	0.16	3	16	3	16	y	0.13	2	13	2	13	y	0.40	2	3	2	3	n	0.05	2	35	2	35	y	0.00	0	10	0	10	n	0.06	1	16	1	16	n	ENSMUSG00000055322.17	Tns1	chr1	protein_coding	tensin 1
known_NIR_932	chr1	74276206	74285239	+	74276058	74285239	A5SS	ENSMUST00000113820.9	known	0.00	0	241	0	241	n	0.00	0	211	0	211	n	0.00	0	312	0	312	n	0.01	3	276	3	276	y	0.00	1	300	1	300	n	0.00	0	159	0	159	n	0.00	1	303	1	303	n	0.00	0	165	0	165	n	0.00	0	215	0	215	n	0.00	1	302	1	302	n	0.00	0	241	0	241	n	0.00	0	271	0	271	n	ENSMUSG00000006304.15	Arpc2	chr1	protein_coding	actin related protein 2/3 complex, subunit 2
known_NIR_933	chr1	74323203	74323662	-	74323200	74323662	A3SS	ENSMUST00000006462.14	known	0.06	18	309	18	309	y	0.07	25	327	25	327	y	0.08	30	344	30	344	y	0.06	25	381	25	381	y	0.07	32	420	32	420	y	0.11	24	191	24	191	y	0.06	26	398	26	398	y	0.07	18	231	18	231	y	0.06	20	304	20	304	y	0.06	33	479	33	479	y	0.07	26	332	26	332	y	0.06	28	419	28	419	y	ENSMUSG00000006299.14	Aamp	chr1	protein_coding	angio-associated migratory protein
known_NIR_934	chr1	74325169	74386544	+	74325169	74326251	3pMXE	ENSMUST00000113805.8	known	0.00	0	113	0	113	n	0.00	0	166	0	166	n	0.00	0	91	0	91	n	0.01	1	121	1	121	n	0.01	1	172	1	172	n	0.00	0	86	0	86	n	0.01	2	197	2	197	y	0.01	1	69	1	69	n	0.00	0	110	0	110	n	0.00	1	201	1	201	n	0.00	0	132	0	132	n	0.01	1	161	1	161	n	ENSMUSG00000026179.15	Pnkd	chr1	protein_coding	paroxysmal nonkinesiogenic dyskinesia
known_NIR_935	chr1	74334598	74342934	-	74334598	74343282	A5SS	ENSMUST00000016309.16	known	0.06	2	34	2	34	y	0.03	1	32	1	32	n	0.00	0	51	0	51	n	0.06	4	60	4	60	y	0.00	0	84	0	84	n	0.05	2	35	2	35	y	0.00	0	53	0	53	n	0.00	0	40	0	40	n	0.00	0	28	0	28	n	0.00	0	49	0	49	n	0.03	1	39	1	39	n	0.00	0	49	0	49	n	ENSMUSG00000006301.18	Tmbim1	chr1	protein_coding	transmembrane BAX inhibitor motif containing 1
known_NIR_936	chr1	74334598	74344672	-	74334598	74343282	5pMXE	ENSMUST00000016309.16	known	0.00	0	34	0	34	n	0.00	0	32	0	32	n	0.02	1	51	1	51	n	0.00	0	60	0	60	n	0.00	0	84	0	84	n	0.00	0	35	0	35	n	0.00	0	53	0	53	n	0.00	0	40	0	40	n	0.07	2	28	2	28	y	0.00	0	49	0	49	n	0.00	0	39	0	39	n	0.00	0	49	0	49	n	ENSMUSG00000006301.18	Tmbim1	chr1	protein_coding	transmembrane BAX inhibitor motif containing 1
known_NIR_937	chr1	74371950	74386544	+	74325169	74386544	A5SS	ENSMUST00000027370.13	known	1.00	134	0	134	0	n	1.00	84	0	84	0	n	1.00	30	0	30	0	n	0.99	129	1	129	1	n	0.99	199	1	199	1	n	1.00	58	0	58	0	n	0.99	141	2	141	2	y	0.99	91	1	91	1	n	1.00	79	0	79	0	n	0.99	147	1	147	1	n	1.00	123	0	123	0	n	0.99	103	1	103	1	n	ENSMUSG00000026179.15	Pnkd	chr1	protein_coding	paroxysmal nonkinesiogenic dyskinesia
known_NIR_938	chr1	74431408	74432437	+	74431123	74432437	A5SS	ENSMUST00000027367.14	known	0.01	1	197	1	197	n	0.01	1	120	1	120	n	0.00	0	155	0	155	n	0.01	2	195	2	195	y	0.02	4	258	4	258	y	0.01	1	97	1	97	n	0.01	3	219	3	219	y	0.05	7	139	7	139	y	0.04	6	128	6	128	y	0.03	8	246	8	246	y	0.02	4	174	4	174	y	0.02	4	232	4	232	y	ENSMUSG00000026176.14	Ctdsp1	chr1	protein_coding	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1
known_NIR_939	chr1	74495379;74499139	74499074;74500725	-	74495379	74500725	cassetteExon	ENSMUST00000044260.11	known	0.14	0.5	3	0;1	3	n	0.33	2.0	4	2;2	4	n	1.00	3.5	0	2;5	0	n	1.00	2.0	0	2;2	0	n	0.23	1.5	5	2;1	5	n	0.50	2.0	2	3;1	2	n	0.33	1.5	3	2;1	3	n	0.44	5.5	7	7;4	7	y	0.40	2.0	3	1;3	3	n	0.33	2.0	4	1;3	4	n	1.00	2.5	0	3;2	0	n	0.47	4.5	5	5;4	5	y	ENSMUSG00000033364.14	Usp37	chr1	protein_coding	ubiquitin specific peptidase 37
known_NIR_940	chr1	74545373	74556229	+	74545620	74556229	A5SS	ENSMUST00000087215.7	known	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.00	0	32	0	32	n	0.00	0	25	0	25	n	0.12	5	38	5	38	y	0.09	2	20	2	20	y	0.03	1	29	1	29	n	0.00	0	17	0	17	n	0.04	1	25	1	25	n	0.03	1	31	1	31	n	0.03	1	30	1	30	n	0.00	0	32	0	32	n	ENSMUSG00000026174.10	Cnot9	chr1	protein_coding	CCR4-NOT transcription complex, subunit 9
known_NIR_941	chr1	74617446	74624543	-	74617446;74619086	74618484;74624543	ES	ENSMUST00000027315.14	known	0.00	0	1.0	0	2;0	n	0.00	0	1.5	0	1;2	n	0.33	2	4.0	2	6;2	y	0.00	0	7.0	0	12;2	n	0.00	0	2.0	0	4;0	n	0.33	1	2.0	1	4;0	n	0.00	0	5.0	0	8;2	n	0.00	0	2.0	0	4;0	n	-	-	-	-	-	-	0.22	1	3.5	1	7;0	n	0.00	0	2.0	0	3;1	n	0.44	2	2.5	2	5;0	n	ENSMUSG00000026135.18	Zfp142	chr1	protein_coding	zinc finger protein 142
known_NIR_942	chr1	74627646	74628645	+	74627552	74628645	A5SS	ENSMUST00000113733.10	known	0.50	15	15	15	15	y	0.32	6	13	6	13	y	0.51	21	20	21	20	y	0.37	16	27	16	27	y	0.50	19	19	19	19	y	0.00	0	8	0	8	n	0.36	16	28	16	28	y	0.22	4	14	4	14	y	0.37	7	12	7	12	y	0.26	9	26	9	26	y	0.40	14	21	14	21	y	0.54	15	13	15	13	y	ENSMUSG00000026172.13	Bcs1l	chr1	protein_coding	BCS1-like (yeast)
known_NIR_943	chr1	74627763	74628645	+	74627552	74628645	A5SS	ENSMUST00000113733.10	known	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.00	0	20	0	20	n	0.04	1	27	1	27	n	0.00	0	19	0	19	n	0.00	0	8	0	8	n	0.07	2	28	2	28	y	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	26	0	26	n	0.00	0	21	0	21	n	0.00	0	13	0	13	n	ENSMUSG00000026172.13	Bcs1l	chr1	protein_coding	BCS1-like (yeast)
known_NIR_944	chr1	74627763	74628645	+	74627646	74628645	A5SS	ENSMUST00000027358.11	known	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	21	0	21	n	0.06	1	16	1	16	n	0.00	0	19	0	19	n	-	-	-	-	-	-	0.11	2	16	2	16	y	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	15	0	15	n	ENSMUSG00000026172.13	Bcs1l	chr1	protein_coding	BCS1-like (yeast)
known_NIR_945	chr1	74634457	74634790	-	74634460	74634790	A3SS	ENSMUST00000135140.8	known	0.32	14	30	14	30	y	0.36	21	38	21	38	y	0.27	17	45	17	45	y	0.29	12	29	12	29	y	0.26	11	31	11	31	y	0.22	8	28	8	28	y	0.17	9	44	9	44	y	0.25	10	30	10	30	y	0.29	12	29	12	29	y	0.20	10	39	10	39	y	0.24	9	29	9	29	y	0.35	12	22	12	22	y	ENSMUSG00000026171.13	Rnf25	chr1	protein_coding	ring finger protein 25
known_NIR_946	chr1	74638299	74640484	-	74638299	74639581	5pMXE	ENSMUST00000127938.8	known	1.00	19	0	19	0	n	1.00	25	0	25	0	n	1.00	30	0	30	0	n	0.84	21	4	21	4	y	1.00	38	0	38	0	n	1.00	12	0	12	0	n	1.00	33	0	33	0	n	1.00	13	0	13	0	n	1.00	15	0	15	0	n	1.00	34	0	34	0	n	1.00	23	0	23	0	n	1.00	26	0	26	0	n	ENSMUSG00000026171.13	Rnf25	chr1	protein_coding	ring finger protein 25
known_NIR_947	chr1	74638299;74639616	74639581;74640484	-	74638299	74640484	cassetteExon	ENSMUST00000135140.8	known	0.00	0.0	19	0;0	19	n	0.00	0.0	25	0;0	25	n	0.00	0.0	30	0;0	30	n	0.14	3.5	21	4;3	21	y	0.00	0.0	38	0;0	38	n	0.00	0.0	12	0;0	12	n	0.00	0.0	33	0;0	33	n	0.00	0.0	13	0;0	13	n	0.00	0.0	15	0;0	15	n	0.00	0.0	34	0;0	34	n	0.00	0.0	23	0;0	23	n	0.00	0.0	26	0;0	26	n	ENSMUSG00000026171.13	Rnf25	chr1	protein_coding	ring finger protein 25
known_NIR_948	chr1	75118147	75118344	-	75118147	75118702	A5SS	ENSMUST00000168720.8	known	0.12	4	28	4	28	y	0.08	3	33	3	33	y	0.10	8	70	8	70	y	0.11	9	71	9	71	y	0.21	10	37	10	37	y	0.06	1	15	1	15	n	0.07	5	69	5	69	y	0.28	7	18	7	18	y	0.09	4	43	4	43	y	0.07	6	76	6	76	y	0.20	9	35	9	35	y	0.06	4	59	4	59	y	ENSMUSG00000033159.15	Cnppd1	chr1	protein_coding	cyclin Pas1/PHO80 domain containing 1
known_NIR_949	chr1	75118147	75119287	-	75118147	75118344	5pMXE	ENSMUST00000189403.7	known	0.64	7	4	7	4	y	0.50	3	3	3	3	n	0.20	2	8	2	8	y	0.40	6	9	6	9	y	0.23	3	10	3	10	y	0.00	0	1	0	1	n	0.38	3	5	3	5	n	0.12	1	7	1	7	n	0.50	4	4	4	4	n	0.45	5	6	5	6	y	0.00	0	9	0	9	n	0.56	5	4	5	4	n	ENSMUSG00000033159.15	Cnppd1	chr1	protein_coding	cyclin Pas1/PHO80 domain containing 1
known_NIR_950	chr1	75118147	75119287	-	75118147	75118702	5pMXE	ENSMUST00000168720.8	known	0.20	7	28	7	28	y	0.08	3	33	3	33	y	0.03	2	70	2	70	y	0.08	6	71	6	71	y	0.07	3	37	3	37	y	0.00	0	15	0	15	n	0.04	3	69	3	69	y	0.05	1	18	1	18	n	0.09	4	43	4	43	y	0.06	5	76	5	76	y	0.00	0	35	0	35	n	0.08	5	59	5	59	y	ENSMUSG00000033159.15	Cnppd1	chr1	protein_coding	cyclin Pas1/PHO80 domain containing 1
known_NIR_951	chr1	75118147	75119287	-	75118147;75119204	75118702;75119287	ES	ENSMUST00000041213.12	known	0.29	7	17.5	7	28;7	y	0.14	3	18.5	3	33;4	y	0.05	2	37.5	2	70;5	y	0.12	6	43.0	6	71;15	y	0.12	3	22.5	3	37;8	y	0.00	0	9.0	0	15;3	n	0.07	3	37.5	3	69;6	y	0.08	1	12.0	1	18;6	n	0.14	4	25.0	4	43;7	y	0.11	5	42.0	5	76;8	y	0.00	0	19.5	0	35;4	n	0.13	5	33.0	5	59;7	y	ENSMUSG00000033159.15	Cnppd1	chr1	protein_coding	cyclin Pas1/PHO80 domain containing 1
known_NIR_952	chr1	75119204	75119287	-	75118147	75119287	A3SS	ENSMUST00000189809.2	known	0.50	7	7	7	7	y	0.57	4	3	4	3	n	0.71	5	2	5	2	n	0.71	15	6	15	6	y	0.73	8	3	8	3	y	1.00	3	0	3	0	n	0.67	6	3	6	3	n	0.86	6	1	6	1	n	0.64	7	4	7	4	y	0.62	8	5	8	5	y	1.00	4	0	4	0	n	0.58	7	5	7	5	y	ENSMUSG00000033159.15	Cnppd1	chr1	protein_coding	cyclin Pas1/PHO80 domain containing 1
known_NIR_953	chr1	75119920	75120013	+	75119772	75120013	A5SS	ENSMUST00000188873.7	known	0.01	1	190	1	190	n	0.01	1	191	1	191	n	0.00	0	180	0	180	n	0.00	0	273	0	273	n	0.00	1	252	1	252	n	0.01	1	136	1	136	n	0.01	2	293	2	293	y	0.00	0	122	0	122	n	0.00	0	186	0	186	n	0.00	1	363	1	363	n	0.01	2	217	2	217	y	0.00	0	332	0	332	n	ENSMUSG00000049339.17	Retreg2	chr1	protein_coding	reticulophagy regulator family member 2
known_NIR_954	chr1	75120597	75120948	+	75120597	75121036	A3SS	ENSMUST00000188873.7	known	0.97	269	8	269	8	y	0.97	190	6	190	6	y	0.99	232	2	232	2	y	0.97	388	10	388	10	y	0.98	370	8	370	8	y	0.98	145	3	145	3	y	0.99	358	5	358	5	y	0.96	146	6	146	6	y	0.95	244	12	244	12	y	0.97	419	12	419	12	y	0.98	300	5	300	5	y	0.96	372	16	372	16	y	ENSMUSG00000049339.17	Retreg2	chr1	protein_coding	reticulophagy regulator family member 2
known_NIR_955	chr1	75121994	75122324	+	75121997	75122324	A5SS	ENSMUST00000188873.7	known	0.03	11	337	11	337	y	0.01	4	296	4	296	y	0.02	5	258	5	258	y	0.01	3	396	3	396	y	0.02	10	395	10	395	y	0.02	3	160	3	160	y	0.02	10	391	10	391	y	0.02	3	176	3	176	y	0.03	9	310	9	310	y	0.02	10	521	10	521	y	0.02	6	335	6	335	y	0.01	7	465	7	465	y	ENSMUSG00000049339.17	Retreg2	chr1	protein_coding	reticulophagy regulator family member 2
known_NIR_956	chr1	75145351	75145475	+	75145351	75145478	A3SS	ENSMUST00000162768.8	known	0.67	29	14	29	14	y	0.78	28	8	28	8	y	0.77	24	7	24	7	y	0.90	37	4	37	4	y	0.70	40	17	40	17	y	0.62	13	8	13	8	y	0.78	42	12	42	12	y	0.83	24	5	24	5	y	0.59	23	16	23	16	y	0.71	39	16	39	16	y	0.62	35	21	35	21	y	0.72	29	11	29	11	y	ENSMUSG00000026197.13	Zfand2b	chr1	protein_coding	zinc finger, AN1 type domain 2B
known_NIR_957	chr1	75145606	75145829	+	75145550	75145829	A5SS	ENSMUST00000162768.8	known	0.00	0	90	0	90	n	0.00	0	67	0	67	n	0.01	1	78	1	78	n	0.01	1	83	1	83	n	0.00	0	93	0	93	n	0.00	0	42	0	42	n	0.02	2	111	2	111	y	0.00	0	39	0	39	n	0.00	0	69	0	69	n	0.00	0	100	0	100	n	0.00	0	114	0	114	n	0.00	0	89	0	89	n	ENSMUSG00000026197.13	Zfand2b	chr1	protein_coding	zinc finger, AN1 type domain 2B
known_NIR_958	chr1	75147692	75147981	+	75147692	75147880	A3SS	ENSMUST00000161106.8	known	0.01	1	179	1	179	n	0.01	3	200	3	200	y	0.02	2	122	2	122	y	0.04	6	151	6	151	y	0.02	3	166	3	166	y	0.00	0	78	0	78	n	0.01	2	193	2	193	y	0.01	1	71	1	71	n	0.02	3	145	3	145	y	0.01	1	196	1	196	n	0.02	3	182	3	182	y	0.01	1	159	1	159	n	ENSMUSG00000026197.13	Zfand2b	chr1	protein_coding	zinc finger, AN1 type domain 2B
known_NIR_959	chr1	75162489	75162654	-	75162489	75162595	A5SS	ENSMUST00000189702.7	known	0.06	8	120	8	120	y	0.07	5	70	5	70	y	0.05	8	148	8	148	y	0.06	8	127	8	127	y	0.04	6	136	6	136	y	0.02	2	80	2	80	y	0.02	3	124	3	124	y	0.08	6	69	6	69	y	0.07	6	78	6	78	y	0.04	5	132	5	132	y	0.05	6	123	6	123	y	0.05	7	122	7	122	y	ENSMUSG00000033124.17	Atg9a	chr1	protein_coding	autophagy related 9A
known_NIR_960	chr1	75163830	75164329	-	75163582	75164329	A3SS	ENSMUST00000189702.7	known	0.00	0	87	0	87	n	0.00	0	51	0	51	n	0.02	2	126	2	126	y	0.01	1	117	1	117	n	0.00	0	165	0	165	n	0.00	0	68	0	68	n	0.00	0	134	0	134	n	0.00	0	63	0	63	n	0.00	0	85	0	85	n	0.02	2	124	2	124	y	0.00	0	91	0	91	n	0.01	1	115	1	115	n	ENSMUSG00000033124.17	Atg9a	chr1	protein_coding	autophagy related 9A
known_NIR_961	chr1	75167521	75168468	-	75167521	75168131	A5SS	ENSMUST00000189702.7	known	0.98	43	1	43	1	n	1.00	18	0	18	0	n	1.00	56	0	56	0	n	0.98	42	1	42	1	n	0.96	53	2	53	2	y	1.00	19	0	19	0	n	1.00	44	0	44	0	n	1.00	33	0	33	0	n	1.00	29	0	29	0	n	1.00	60	0	60	0	n	1.00	36	0	36	0	n	1.00	44	0	44	0	n	ENSMUSG00000033124.17	Atg9a	chr1	protein_coding	autophagy related 9A
known_NIR_962	chr1	75167524	75168131	-	75167524	75168468	A5SS	ENSMUST00000239085.2	known	0.00	0	30	0	30	n	0.00	0	25	0	25	n	0.00	0	56	0	56	n	0.00	0	60	0	60	n	0.03	2	58	2	58	y	0.00	0	33	0	33	n	0.05	3	62	3	62	y	0.00	0	29	0	29	n	0.00	0	36	0	36	n	0.02	1	61	1	61	n	0.04	2	46	2	46	y	0.00	0	54	0	54	n	ENSMUSG00000033124.17	Atg9a	chr1	protein_coding	autophagy related 9A
known_NIR_963	chr1	75167524	75168468	-	75167521	75168468	A3SS	ENSMUST00000189665.7	known	0.41	30	43	30	43	y	0.58	25	18	25	18	y	0.50	56	56	56	56	y	0.59	60	42	60	42	y	0.52	58	53	58	53	y	0.63	33	19	33	19	y	0.58	62	44	62	44	y	0.47	29	33	29	33	y	0.55	36	29	36	29	y	0.50	61	60	61	60	y	0.56	46	36	46	36	y	0.55	54	44	54	44	y	ENSMUSG00000033124.17	Atg9a	chr1	protein_coding	autophagy related 9A
known_NIR_964	chr1	75169321	75171485	+	75170928	75171485	A5SS	ENSMUST00000151887.9	known	0.00	0	39	0	39	n	0.12	4	28	4	28	y	0.07	2	25	2	25	y	0.05	2	39	2	39	y	0.03	1	33	1	33	n	0.00	0	10	0	10	n	0.07	3	40	3	40	y	0.00	0	26	0	26	n	0.06	2	29	2	29	y	0.06	2	31	2	31	y	0.08	2	23	2	23	y	0.06	2	31	2	31	y	ENSMUSG00000026199.18	Ankzf1	chr1	protein_coding	ankyrin repeat and zinc finger domain containing 1
known_NIR_965	chr1	75169321;75170928	75170822;75171485	+	75169321	75171485	cassetteExon	ENSMUST00000134378.9	known	1.00	29.5	0	20;39	0	n	0.83	19.0	4	10;28	4	y	0.90	19.0	2	13;25	2	y	0.94	31.0	2	23;39	2	y	0.97	28.5	1	24;33	1	n	1.00	9.5	0	9;10	0	n	0.91	29.0	3	18;40	3	y	1.00	19.5	0	13;26	0	n	0.91	21.5	2	14;29	2	y	0.93	26.0	2	21;31	2	y	0.90	19.0	2	15;23	2	y	0.92	24.0	2	17;31	2	y	ENSMUSG00000026199.18	Ankzf1	chr1	protein_coding	ankyrin repeat and zinc finger domain containing 1
known_NIR_966	chr1	75171900	75172213	+	75171900	75172244	A3SS	ENSMUST00000152233.9	known	0.05	1	19	1	19	n	0.10	1	9	1	9	n	0.12	2	14	2	14	y	0.06	1	17	1	17	n	0.14	4	25	4	25	y	0.00	0	10	0	10	n	0.10	2	18	2	18	y	0.00	0	14	0	14	n	0.12	2	14	2	14	y	0.32	9	19	9	19	y	0.30	6	14	6	14	y	0.05	1	18	1	18	n	ENSMUSG00000026199.18	Ankzf1	chr1	protein_coding	ankyrin repeat and zinc finger domain containing 1
known_NIR_967	chr1	75187643	75187884	+	75187668	75187884	A5SS	ENSMUST00000123825.8	known	0.00	0	31	0	31	n	0.05	2	37	2	37	y	0.00	0	35	0	35	n	0.03	1	35	1	35	n	0.02	1	45	1	45	n	0.07	1	14	1	14	n	0.00	0	56	0	56	n	0.00	0	18	0	18	n	0.00	0	29	0	29	n	0.00	0	58	0	58	n	0.03	1	33	1	33	n	0.11	3	25	3	25	y	ENSMUSG00000026201.13	Stk16	chr1	protein_coding	serine/threonine kinase 16
known_NIR_968	chr1	75187643	75187884	+	75187696	75187884	A5SS	ENSMUST00000027401.11	known	0.00	0	164	0	164	n	0.01	2	169	2	169	y	0.00	0	161	0	161	n	0.01	1	184	1	184	n	0.00	1	259	1	259	n	0.01	1	110	1	110	n	0.00	0	260	0	260	n	0.00	0	137	0	137	n	0.00	0	141	0	141	n	0.00	0	236	0	236	n	0.01	1	184	1	184	n	0.02	3	184	3	184	y	ENSMUSG00000026201.13	Stk16	chr1	protein_coding	serine/threonine kinase 16
known_NIR_969	chr1	75187668	75187884	+	75187696	75187884	A5SS	ENSMUST00000027401.11	known	0.16	31	164	31	164	y	0.18	37	169	37	169	y	0.18	35	161	35	161	y	0.16	35	184	35	184	y	0.15	45	259	45	259	y	0.11	14	110	14	110	y	0.18	56	260	56	260	y	0.12	18	137	18	137	y	0.17	29	141	29	141	y	0.20	58	236	58	236	y	0.15	33	184	33	184	y	0.12	25	184	25	184	y	ENSMUSG00000026201.13	Stk16	chr1	protein_coding	serine/threonine kinase 16
known_NIR_970	chr1	75187802	75187884	+	75187643	75187884	A5SS	ENSMUST00000135484.8	known	1.00	16	0	16	0	n	0.80	8	2	8	2	y	1.00	13	0	13	0	n	0.95	18	1	18	1	n	0.91	10	1	10	1	n	0.86	6	1	6	1	n	1.00	12	0	12	0	n	1.00	2	0	2	0	n	1.00	4	0	4	0	n	1.00	14	0	14	0	n	0.80	4	1	4	1	n	0.70	7	3	7	3	y	ENSMUSG00000026201.13	Stk16	chr1	protein_coding	serine/threonine kinase 16
known_NIR_971	chr1	75187802	75187884	+	75187668	75187884	A5SS	ENSMUST00000123825.8	known	0.34	16	31	16	31	y	0.18	8	37	8	37	y	0.27	13	35	13	35	y	0.34	18	35	18	35	y	0.18	10	45	10	45	y	0.30	6	14	6	14	y	0.18	12	56	12	56	y	0.10	2	18	2	18	y	0.12	4	29	4	29	y	0.19	14	58	14	58	y	0.11	4	33	4	33	y	0.22	7	25	7	25	y	ENSMUSG00000026201.13	Stk16	chr1	protein_coding	serine/threonine kinase 16
known_NIR_972	chr1	75187802	75187884	+	75187696	75187884	A5SS	ENSMUST00000027401.11	known	0.09	16	164	16	164	y	0.05	8	169	8	169	y	0.07	13	161	13	161	y	0.09	18	184	18	184	y	0.04	10	259	10	259	y	0.05	6	110	6	110	y	0.04	12	260	12	260	y	0.01	2	137	2	137	y	0.03	4	141	4	141	y	0.06	14	236	14	236	y	0.02	4	184	4	184	y	0.04	7	184	7	184	y	ENSMUSG00000026201.13	Stk16	chr1	protein_coding	serine/threonine kinase 16
known_NIR_973	chr1	75189377	75189698	+	75189377	75189530	A3SS&ES	ENSMUST00000027401.11	known	0.00	0	269	0	269	n	0.00	1	254	1	254	n	0.00	0	200	0	200	n	0.01	3	254	3	254	y	0.02	9	359	9	359	y	0.00	0	144	0	144	n	0.01	4	354	4	354	y	0.00	0	168	0	168	n	0.04	7	178	7	178	y	0.02	6	354	6	354	y	0.00	1	256	1	256	n	0.00	1	246	1	246	n	ENSMUSG00000026201.13	Stk16	chr1	protein_coding	serine/threonine kinase 16
known_NIR_974	chr1	75189650	75189757	+	75189650	75189777	A3SS	ENSMUST00000027401.11	known	0.00	1	207	1	207	n	0.04	10	244	10	244	y	0.01	1	184	1	184	n	0.00	1	242	1	242	n	0.02	6	348	6	348	y	0.01	1	109	1	109	n	0.02	6	325	6	325	y	0.02	3	141	3	141	y	0.02	3	155	3	155	y	0.02	5	292	5	292	y	0.02	5	263	5	263	y	0.02	4	249	4	249	y	ENSMUSG00000026201.13	Stk16	chr1	protein_coding	serine/threonine kinase 16
known_NIR_975	chr1	75193092	75193471	-	75193237	75193471	A3SS	ENSMUST00000186213.7	known	0.02	13	558	13	558	y	0.02	8	426	8	426	y	0.02	12	516	12	516	y	0.03	13	491	13	491	y	0.02	12	557	12	557	y	0.03	8	233	8	233	y	0.03	13	485	13	485	y	0.03	10	290	10	290	y	0.03	19	545	19	545	y	0.03	19	620	19	620	y	0.01	7	646	7	646	y	0.04	24	604	24	604	y	ENSMUSG00000026202.14	Tuba4a	chr1	protein_coding	tubulin, alpha 4A
known_NIR_976	chr1	75194078	75195434	-	75194078	75195837	A5SS	ENSMUST00000186213.7	known	0.00	0	458	0	458	n	0.00	0	267	0	267	n	0.00	0	374	0	374	n	0.00	0	368	0	368	n	0.00	0	446	0	446	n	0.00	0	192	0	192	n	0.00	0	370	0	370	n	0.00	0	216	0	216	n	0.00	0	340	0	340	n	0.01	2	387	2	387	y	0.00	0	487	0	487	n	0.00	0	455	0	455	n	ENSMUSG00000026202.14	Tuba4a	chr1	protein_coding	tubulin, alpha 4A
known_NIR_977	chr1	75194078	75196070	-	75194078	75195837	5pMXE	ENSMUST00000186213.7	known	0.00	0	458	0	458	n	0.01	2	267	2	267	y	0.00	0	374	0	374	n	0.01	2	368	2	368	y	0.01	3	446	3	446	y	0.00	0	192	0	192	n	0.00	0	370	0	370	n	0.00	0	216	0	216	n	0.00	0	340	0	340	n	0.01	2	387	2	387	y	0.00	2	487	2	487	y	0.00	0	455	0	455	n	ENSMUSG00000026202.14	Tuba4a	chr1	protein_coding	tubulin, alpha 4A
known_NIR_978	chr1	75213181	75213496	+	75213233	75213496	A5SS	ENSMUST00000188931.7	known	0.02	1	63	1	63	n	0.02	1	57	1	57	n	0.17	9	44	9	44	y	0.06	4	58	4	58	y	0.02	2	90	2	90	y	0.06	2	29	2	29	y	0.03	2	69	2	69	y	0.03	1	32	1	32	n	0.04	2	53	2	53	y	0.04	3	77	3	77	y	0.03	2	59	2	59	y	0.00	0	78	0	78	n	ENSMUSG00000026203.17	Dnajb2	chr1	protein_coding	DnaJ heat shock protein family (Hsp40) member B2
known_NIR_979	chr1	75214208	75215752	+	75214208	75215924	A3SS	ENSMUST00000188931.7	known	0.00	0	133	0	133	n	0.00	0	107	0	107	n	0.01	1	129	1	129	n	0.01	2	159	2	159	y	0.00	0	151	0	151	n	0.00	0	61	0	61	n	0.01	2	163	2	163	y	0.05	4	81	4	81	y	0.00	0	103	0	103	n	0.00	0	152	0	152	n	0.02	3	120	3	120	y	0.00	0	139	0	139	n	ENSMUSG00000026203.17	Dnajb2	chr1	protein_coding	DnaJ heat shock protein family (Hsp40) member B2
known_NIR_980	chr1	75214208	75216152	+	75214208	75215924	3pMXE	ENSMUST00000185654.3	known	0.01	2	133	2	133	y	0.02	2	107	2	107	y	0.06	8	129	8	129	y	0.01	1	159	1	159	n	0.03	4	151	4	151	y	0.05	3	61	3	61	y	0.01	2	163	2	163	y	0.01	1	81	1	81	n	0.01	1	103	1	103	n	0.00	0	152	0	152	n	0.02	2	120	2	120	y	0.03	4	139	4	139	y	ENSMUSG00000026203.17	Dnajb2	chr1	protein_coding	DnaJ heat shock protein family (Hsp40) member B2
known_NIR_981	chr1	75214208	75216152	+	75214208;75215977	75215924;75216152	ES	ENSMUST00000188931.7	known	0.02	2	117.5	2	133;102	y	0.02	2	105.0	2	107;103	y	0.07	8	114.0	8	129;99	y	0.01	1	142.0	1	159;125	n	0.03	4	144.0	4	151;137	y	0.04	3	64.0	3	61;67	y	0.01	2	153.5	2	163;144	y	0.01	1	72.0	1	81;63	n	0.01	1	95.0	1	103;87	n	0.00	0	165.5	0	152;179	n	0.02	2	114.5	2	120;109	y	0.03	4	131.5	4	139;124	y	ENSMUSG00000026203.17	Dnajb2	chr1	protein_coding	DnaJ heat shock protein family (Hsp40) member B2
known_NIR_982	chr1	75214208;75215977	75215752;75216152	+	75214208	75216152	cassetteExon	ENSMUST00000055223.14	known	0.96	51.0	2	0;102	2	n	0.96	51.5	2	0;103	2	n	0.86	50.0	8	1;99	8	n	0.98	63.5	1	2;125	1	n	0.94	68.5	4	0;137	4	n	0.92	33.5	3	0;67	3	n	0.97	73.0	2	2;144	2	y	0.97	33.5	1	4;63	1	n	0.98	43.5	1	0;87	1	n	1.00	89.5	0	0;179	0	n	0.97	56.0	2	3;109	2	y	0.94	62.0	4	0;124	4	n	ENSMUSG00000026203.17	Dnajb2	chr1	protein_coding	DnaJ heat shock protein family (Hsp40) member B2
known_NIR_983	chr1	75293447	75293535	-	75293447	75293979	A5SS	ENSMUST00000066668.14	known	0.80	59	15	59	15	y	0.72	42	16	42	16	y	0.84	91	17	91	17	y	0.73	66	24	66	24	y	0.74	78	27	78	27	y	0.89	70	9	70	9	y	0.72	70	27	70	27	y	0.79	65	17	65	17	y	0.56	35	28	35	28	y	0.65	54	29	54	29	y	0.76	53	17	53	17	y	0.74	61	21	61	21	y	ENSMUSG00000026209.16	Dnpep	chr1	protein_coding	aspartyl aminopeptidase
known_NIR_984	chr1	75293447	75293726	-	75293447	75293535	5pMXE	ENSMUST00000185419.7	known	0.06	4	59	4	59	y	0.05	2	42	2	42	y	0.03	3	91	3	91	y	0.08	6	66	6	66	y	0.06	5	78	5	78	y	0.00	0	70	0	70	n	0.01	1	70	1	70	n	0.02	1	65	1	65	n	0.08	3	35	3	35	y	0.10	6	54	6	54	y	0.04	2	53	2	53	y	0.18	13	61	13	61	y	ENSMUSG00000026209.16	Dnpep	chr1	protein_coding	aspartyl aminopeptidase
known_NIR_985	chr1	75293447	75293726	-	75293447	75293979	A5SS	ENSMUST00000066668.14	known	0.21	4	15	4	15	y	0.11	2	16	2	16	y	0.15	3	17	3	17	y	0.20	6	24	6	24	y	0.16	5	27	5	27	y	0.00	0	9	0	9	n	0.04	1	27	1	27	n	0.06	1	17	1	17	n	0.10	3	28	3	28	y	0.17	6	29	6	29	y	0.11	2	17	2	17	y	0.38	13	21	13	21	y	ENSMUSG00000026209.16	Dnpep	chr1	protein_coding	aspartyl aminopeptidase
known_NIR_986	chr1	75293447	75293789	-	75293447	75293535	5pMXE	ENSMUST00000185419.7	known	0.09	6	59	6	59	y	0.14	7	42	7	42	y	0.07	7	91	7	91	y	0.06	4	66	4	66	y	0.10	9	78	9	78	y	0.03	2	70	2	70	y	0.11	9	70	9	70	y	0.04	3	65	3	65	y	0.12	5	35	5	35	y	0.13	8	54	8	54	y	0.05	3	53	3	53	y	0.03	2	61	2	61	y	ENSMUSG00000026209.16	Dnpep	chr1	protein_coding	aspartyl aminopeptidase
known_NIR_987	chr1	75293447	75293789	-	75293447	75293726	A5SS	ENSMUST00000187075.7	known	0.60	6	4	6	4	y	0.78	7	2	7	2	n	0.70	7	3	7	3	y	0.40	4	6	4	6	y	0.64	9	5	9	5	y	1.00	2	0	2	0	n	0.90	9	1	9	1	n	0.75	3	1	3	1	n	0.62	5	3	5	3	n	0.57	8	6	8	6	y	0.60	3	2	3	2	n	0.13	2	13	2	13	y	ENSMUSG00000026209.16	Dnpep	chr1	protein_coding	aspartyl aminopeptidase
known_NIR_988	chr1	75293447	75293789	-	75293447	75293979	A5SS	ENSMUST00000066668.14	known	0.29	6	15	6	15	y	0.30	7	16	7	16	y	0.29	7	17	7	17	y	0.14	4	24	4	24	y	0.25	9	27	9	27	y	0.18	2	9	2	9	y	0.25	9	27	9	27	y	0.15	3	17	3	17	y	0.15	5	28	5	28	y	0.22	8	29	8	29	y	0.15	3	17	3	17	y	0.09	2	21	2	21	y	ENSMUSG00000026209.16	Dnpep	chr1	protein_coding	aspartyl aminopeptidase
known_NIR_989	chr1	75379117	75380421	+	75379117	75381531	A3SS	ENSMUST00000087122.12	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	n	1.00	2	0	2	0	n	0.38	5	8	5	8	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	n	ENSMUSG00000026207.17	Speg	chr1	protein_coding	SPEG complex locus
known_NIR_990	chr1	75412655	75413422	+	75412655	75412759	A3SS&ES	ENSMUST00000133418.8	known	1.00	24	0	24	0	n	1.00	31	0	31	0	n	1.00	55	0	55	0	n	1.00	26	0	26	0	n	0.98	41	1	41	1	n	0.97	28	1	28	1	n	1.00	40	0	40	0	n	0.97	28	1	28	1	n	1.00	29	0	29	0	n	1.00	33	0	33	0	n	1.00	21	0	21	0	n	0.95	39	2	39	2	y	ENSMUSG00000033021.17	Gmppa	chr1	protein_coding	GDP-mannose pyrophosphorylase A
known_NIR_991	chr1	75412655	75413422	+	75412837	75413422	5pMXE	ENSMUST00000131545.8	known	0.86	24	4	24	4	y	0.89	31	4	31	4	y	0.87	55	8	55	8	y	0.93	26	2	26	2	y	0.93	41	3	41	3	y	0.88	28	4	28	4	y	0.91	40	4	40	4	y	0.93	28	2	28	2	y	1.00	29	0	29	0	n	0.97	33	1	33	1	n	1.00	21	0	21	0	n	0.93	39	3	39	3	y	ENSMUSG00000033021.17	Gmppa	chr1	protein_coding	GDP-mannose pyrophosphorylase A
known_NIR_992	chr1	75412655	75413422	+	75412956	75413422	A5SS	ENSMUST00000145166.8	known	0.57	24	18	24	18	y	0.45	31	38	31	38	y	0.52	55	51	55	51	y	0.43	26	35	26	35	y	0.37	41	69	41	69	y	0.40	28	42	28	42	y	0.50	40	40	40	40	y	0.39	28	43	28	43	y	0.66	29	15	29	15	y	0.63	33	19	33	19	y	0.53	21	19	21	19	y	0.49	39	40	39	40	y	ENSMUSG00000033021.17	Gmppa	chr1	protein_coding	GDP-mannose pyrophosphorylase A
known_NIR_993	chr1	75412655	75413428	+	75412655	75413422	A3SS	ENSMUST00000037796.14	known	0.00	0	24	0	24	n	0.00	0	31	0	31	n	0.02	1	55	1	55	n	0.07	2	26	2	26	y	0.07	3	41	3	41	y	0.10	3	28	3	28	y	0.00	0	40	0	40	n	0.00	0	28	0	28	n	0.03	1	29	1	29	n	0.03	1	33	1	33	n	0.09	2	21	2	21	y	0.00	0	39	0	39	n	ENSMUSG00000033021.17	Gmppa	chr1	protein_coding	GDP-mannose pyrophosphorylase A
known_NIR_994	chr1	75412655	75413428	+	75412956	75413428	A5SS	ENSMUST00000140287.8	known	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.08	1	12	1	12	n	0.25	2	6	2	6	n	0.21	3	11	3	11	y	0.23	3	10	3	10	y	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.33	1	2	1	2	n	0.17	1	5	1	5	n	0.50	2	2	2	2	n	0.00	0	5	0	5	n	ENSMUSG00000033021.17	Gmppa	chr1	protein_coding	GDP-mannose pyrophosphorylase A
known_NIR_995	chr1	75412655	75413638	+	75412655	75413422	A3SS&ES	ENSMUST00000037796.14	known	0.00	0	24	0	24	n	0.00	0	31	0	31	n	0.00	0	55	0	55	n	0.00	0	26	0	26	n	0.00	0	41	0	41	n	0.00	0	28	0	28	n	0.00	0	40	0	40	n	0.07	2	28	2	28	y	0.00	0	29	0	29	n	0.03	1	33	1	33	n	0.00	0	21	0	21	n	0.00	0	39	0	39	n	ENSMUSG00000033021.17	Gmppa	chr1	protein_coding	GDP-mannose pyrophosphorylase A
known_NIR_996	chr1	75412655;75412837	75412759;75413422	+	75412655	75413422	cassetteExon	ENSMUST00000037796.14	known	0.08	2.0	24	0;4	24	n	0.06	2.0	31	0;4	31	n	0.07	4.0	55	0;8	55	n	0.04	1.0	26	0;2	26	n	0.05	2.0	41	1;3	41	n	0.08	2.5	28	1;4	28	n	0.05	2.0	40	0;4	40	n	0.05	1.5	28	1;2	28	n	0.00	0.0	29	0;0	29	n	0.01	0.5	33	0;1	33	n	0.00	0.0	21	0;0	21	n	0.06	2.5	39	2;3	39	y	ENSMUSG00000033021.17	Gmppa	chr1	protein_coding	GDP-mannose pyrophosphorylase A
known_NIR_997	chr1	75412655;75412956	75412759;75413422	+	75412655	75413422	cassetteExon	ENSMUST00000037796.14	known	0.27	9.0	24	0;18	24	n	0.38	19.0	31	0;38	31	n	0.32	25.5	55	0;51	55	n	0.40	17.5	26	0;35	26	n	0.46	35.0	41	1;69	41	n	0.43	21.5	28	1;42	28	n	0.33	20.0	40	0;40	40	n	0.44	22.0	28	1;43	28	n	0.21	7.5	29	0;15	29	n	0.22	9.5	33	0;19	33	n	0.31	9.5	21	0;19	21	n	0.35	21.0	39	2;40	39	y	ENSMUSG00000033021.17	Gmppa	chr1	protein_coding	GDP-mannose pyrophosphorylase A
known_NIR_998	chr1	75412837	75413422	+	75412956	75413422	A5SS	ENSMUST00000113584.8	known	0.18	4	18	4	18	y	0.10	4	38	4	38	y	0.14	8	51	8	51	y	0.05	2	35	2	35	y	0.04	3	69	3	69	y	0.09	4	42	4	42	y	0.09	4	40	4	40	y	0.04	2	43	2	43	y	0.00	0	15	0	15	n	0.05	1	19	1	19	n	0.00	0	19	0	19	n	0.07	3	40	3	40	y	ENSMUSG00000033021.17	Gmppa	chr1	protein_coding	GDP-mannose pyrophosphorylase A
known_NIR_999	chr1	75412956	75413428	+	75412956	75413422	A3SS	ENSMUST00000113584.8	known	0.28	7	18	7	18	y	0.12	5	38	5	38	y	0.19	12	51	12	51	y	0.15	6	35	6	35	y	0.14	11	69	11	69	y	0.19	10	42	10	42	y	0.17	8	40	8	40	y	0.22	12	43	12	43	y	0.12	2	15	2	15	y	0.21	5	19	5	19	y	0.10	2	19	2	19	y	0.11	5	40	5	40	y	ENSMUSG00000033021.17	Gmppa	chr1	protein_coding	GDP-mannose pyrophosphorylase A
known_NIR_1000	chr1	75416048	75417132	+	75416048	75417056	A3SS	ENSMUST00000037796.14	known	0.05	6	105	6	105	y	0.07	8	108	8	108	y	0.03	5	156	5	156	y	0.05	5	99	5	99	y	0.01	2	154	2	154	y	0.05	6	109	6	109	y	0.04	5	117	5	117	y	0.03	3	100	3	100	y	0.05	4	84	4	84	y	0.03	3	104	3	104	y	0.03	3	105	3	105	y	0.05	4	80	4	80	y	ENSMUSG00000033021.17	Gmppa	chr1	protein_coding	GDP-mannose pyrophosphorylase A
known_NIR_1001	chr1	78449271	78454830	-	78449271;78452942	78452827;78454830	ES	ENSMUST00000170217.8	known	0.00	0	62.0	0	58;66	n	0.00	0	56.0	0	56;56	n	0.00	0	89.5	0	94;85	n	0.01	1	98.0	1	82;114	n	0.04	4	90.0	4	78;102	y	0.00	0	42.5	0	40;45	n	0.07	6	77.0	6	66;88	y	0.00	0	40.5	0	38;43	n	0.00	0	54.5	0	50;59	n	0.00	0	90.0	0	83;97	n	0.02	1	64.5	1	60;69	n	0.00	0	60.0	0	56;64	n	ENSMUSG00000026245.17	Farsb	chr1	protein_coding	phenylalanyl-tRNA synthetase, beta subunit
known_NIR_1002	chr1	78456650	78458945	-	78456748	78458945	A3SS	ENSMUST00000170217.8	known	0.13	8	52	8	52	y	0.06	4	62	4	62	y	0.04	4	94	4	94	y	0.01	1	94	1	94	n	0.01	1	98	1	98	n	0.10	7	62	7	62	y	0.14	10	64	10	64	y	0.09	5	51	5	51	y	0.20	12	47	12	47	y	0.07	6	76	6	76	y	0.06	4	63	4	63	y	0.11	7	59	7	59	y	ENSMUSG00000026245.17	Farsb	chr1	protein_coding	phenylalanyl-tRNA synthetase, beta subunit
known_NIR_1003	chr1	78456748	78465422	-	78456748;78459000	78458945;78465422	ES	ENSMUST00000170217.8	known	0.00	0	51.5	0	52;51	n	0.00	0	53.0	0	62;44	n	0.02	2	87.0	2	94;80	y	0.00	0	87.5	0	94;81	n	0.00	0	87.5	0	98;77	n	0.02	1	62.0	1	62;62	n	0.06	4	62.0	4	64;60	y	0.00	0	49.0	0	51;47	n	0.00	0	45.5	0	47;44	n	0.01	1	71.5	1	76;67	n	0.00	0	57.0	0	63;51	n	0.00	0	55.0	0	59;51	n	ENSMUSG00000026245.17	Farsb	chr1	protein_coding	phenylalanyl-tRNA synthetase, beta subunit
known_NIR_1004	chr1	78456748	78465422	-	78459000	78465422	A3SS&ES	ENSMUST00000189529.7	known	0.00	0	51	0	51	n	0.00	0	44	0	44	n	0.02	2	80	2	80	y	0.00	0	81	0	81	n	0.00	0	77	0	77	n	0.02	1	62	1	62	n	0.06	4	60	4	60	y	0.00	0	47	0	47	n	0.00	0	44	0	44	n	0.01	1	67	1	67	n	0.00	0	51	0	51	n	0.00	0	51	0	51	n	ENSMUSG00000026245.17	Farsb	chr1	protein_coding	phenylalanyl-tRNA synthetase, beta subunit
known_NIR_1005	chr1	78635820	78659310	+	78635820;78640997	78640858;78659310	ES	ENSMUST00000035779.15	known	0.54	11	9.5	11	7;12	y	0.35	3	5.5	3	7;4	y	0.50	27	26.5	27	32;21	y	0.47	14	15.5	14	18;13	y	0.32	11	23.0	11	19;27	y	0.58	21	15.5	21	20;11	y	0.48	11	12.0	11	14;10	y	0.52	16	15.0	16	16;14	y	0.55	12	10.0	12	13;7	y	0.50	20	20.0	20	16;24	y	0.52	13	12.0	13	18;6	y	0.41	19	27.0	19	28;26	y	ENSMUSG00000032883.16	Acsl3	chr1	protein_coding	acyl-CoA synthetase long-chain family member 3
known_NIR_1006	chr1	78640997	78642043	+	78640997	78659310	A3SS	ENSMUST00000035779.15	known	0.14	2	12	2	12	y	0.43	3	4	3	4	n	0.16	4	21	4	21	y	0.32	6	13	6	13	y	0.21	7	27	7	27	y	0.21	3	11	3	11	y	0.23	3	10	3	10	y	0.12	2	14	2	14	y	0.22	2	7	2	7	n	0.20	6	24	6	24	y	0.14	1	6	1	6	n	0.13	4	26	4	26	y	ENSMUSG00000032883.16	Acsl3	chr1	protein_coding	acyl-CoA synthetase long-chain family member 3
known_NIR_1007	chr1	79685288	79686810	-	79685299	79686810	A3SS	ENSMUST00000113512.8	known	0.00	0	24	0	24	n	0.00	0	14	0	14	n	0.00	0	28	0	28	n	0.00	0	23	0	23	n	0.00	0	20	0	20	n	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.00	0	28	0	28	n	0.22	6	21	6	21	y	0.00	0	17	0	17	n	0.00	0	21	0	21	n	ENSMUSG00000073643.12	Wdfy1	chr1	protein_coding	WD repeat and FYVE domain containing 1
known_NIR_1008	chr1	80281910	80299502	-	80281910	80300704	A5SS	ENSMUST00000170897.8	known	0.80	4	1	4	1	n	0.67	10	5	10	5	y	0.71	10	4	10	4	y	0.50	7	7	7	7	y	0.43	6	8	6	8	y	0.67	4	2	4	2	n	0.40	4	6	4	6	y	0.40	2	3	2	3	n	1.00	8	0	8	0	n	0.58	7	5	7	5	y	0.43	3	4	3	4	n	0.53	8	7	8	7	y	ENSMUSG00000004364.15	Cul3	chr1	protein_coding	cullin 3
known_NIR_1009	chr1	80281910	80300704	-	80281910	80300576	A5SS	ENSMUST00000163119.8	known	0.02	1	43	1	43	n	0.17	5	25	5	25	y	0.05	4	71	4	71	y	0.08	7	78	7	78	y	0.07	8	103	8	103	y	0.05	2	37	2	37	y	0.08	6	72	6	72	y	0.08	3	36	3	36	y	0.00	0	50	0	50	n	0.06	5	78	5	78	y	0.05	4	74	4	74	y	0.08	7	79	7	79	y	ENSMUSG00000004364.15	Cul3	chr1	protein_coding	cullin 3
known_NIR_1010	chr1	82697905	82702508	-	82676063	82702508	A3SS	ENSMUST00000181720.2	known	0.67	2	1	2	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.22	2	7	2	7	n	0.00	0	8	0	8	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.17	2	10	2	10	y	0.20	1	4	1	4	n	0.07	1	13	1	13	n	ENSMUSG00000097564.3	C430014B12Rik	chr1	lncRNA	RIKEN cDNA C430014B12 gene
known_NIR_1011	chr1	82705057;82705959	82705788;82706937	+	82705057	82706937	cassetteExon	ENSMUST00000078332.13	known	0.08	4.5	54	5;4	54	y	0.06	3.5	56	3;4	56	y	0.05	5.0	102	4;6	102	y	0.06	5.0	79	2;8	79	y	0.04	4.5	108	6;3	108	y	0.00	0.0	42	0;0	42	n	0.04	3.5	96	4;3	96	y	0.02	1.0	40	0;2	40	n	0.02	1.5	61	0;3	61	n	0.04	4.0	92	2;6	92	y	0.05	3.5	69	2;5	69	y	0.04	4.0	98	2;6	98	y	ENSMUSG00000026150.15	Mff	chr1	protein_coding	mitochondrial fission factor
known_NIR_1012	chr1	82709003	82713137	+	82709003	82713140	A3SS	ENSMUST00000078332.13	known	0.44	37	47	37	47	y	0.37	28	47	28	47	y	0.45	58	72	58	72	y	0.44	36	45	36	45	y	0.43	54	71	54	71	y	0.29	16	39	16	39	y	0.41	53	75	53	75	y	0.42	28	39	28	39	y	0.41	41	59	41	59	y	0.39	46	73	46	73	y	0.36	36	64	36	64	y	0.35	40	75	40	75	y	ENSMUSG00000026150.15	Mff	chr1	protein_coding	mitochondrial fission factor
known_NIR_1013	chr1	82713228	82724804	+	82713228	82719539	3pMXE	ENSMUST00000159279.8	known	0.34	13	25	13	25	y	0.66	21	11	21	11	y	0.18	11	50	11	50	y	0.50	18	18	18	18	y	0.31	16	35	16	35	y	0.28	11	29	11	29	y	0.46	34	40	34	40	y	0.48	12	13	12	13	y	0.43	12	16	12	16	y	0.27	15	41	15	41	y	0.39	14	22	14	22	y	0.43	25	33	25	33	y	ENSMUSG00000026150.15	Mff	chr1	protein_coding	mitochondrial fission factor
known_NIR_1014	chr1	82713228	82724804	+	82713228;82719697	82719539;82724804	ES	ENSMUST00000078332.13	known	0.29	13	32.0	13	25;39	y	0.66	21	11.0	21	11;11	y	0.18	11	49.5	11	50;49	y	0.55	18	15.0	18	18;12	y	0.31	16	36.0	16	35;37	y	0.30	11	25.5	11	29;22	y	0.44	34	43.0	34	40;46	y	0.51	12	11.5	12	13;10	y	0.42	12	16.5	12	16;17	y	0.32	15	32.5	15	41;24	y	0.39	14	21.5	14	22;21	y	0.49	25	26.0	25	33;19	y	ENSMUSG00000026150.15	Mff	chr1	protein_coding	mitochondrial fission factor
known_NIR_1015	chr1	82713228	82728241	+	82713228	82719539	3pMXE	ENSMUST00000159279.8	known	0.68	54	25	54	25	y	0.84	56	11	56	11	y	0.54	58	50	58	50	y	0.74	50	18	50	18	y	0.53	40	35	40	35	y	0.43	22	29	22	29	y	0.59	58	40	58	40	y	0.74	37	13	37	13	y	0.72	41	16	41	16	y	0.66	78	41	78	41	y	0.75	67	22	67	22	y	0.66	64	33	64	33	y	ENSMUSG00000026150.15	Mff	chr1	protein_coding	mitochondrial fission factor
known_NIR_1016	chr1	82713228	82728241	+	82713228;82724863	82724804;82728241	ES	ENSMUST00000073025.12	known	0.57	54	41.0	54	13;69	y	0.59	56	39.5	56	21;58	y	0.55	58	48.0	58	11;85	y	0.60	50	33.0	50	18;48	y	0.49	40	41.5	40	16;67	y	0.46	22	25.5	22	11;40	y	0.48	58	63.0	58	34;92	y	0.61	37	24.0	37	12;36	y	0.61	41	26.0	41	12;40	y	0.66	78	40.5	78	15;66	y	0.67	67	33.0	67	14;52	y	0.60	64	43.5	64	25;62	y	ENSMUSG00000026150.15	Mff	chr1	protein_coding	mitochondrial fission factor
known_NIR_1017	chr1	82713228	82728241	+	82724863	82728241	5pMXE	ENSMUST00000162794.2	known	0.44	54	69	54	69	y	0.49	56	58	56	58	y	0.41	58	85	58	85	y	0.51	50	48	50	48	y	0.37	40	67	40	67	y	0.35	22	40	22	40	y	0.39	58	92	58	92	y	0.51	37	36	37	36	y	0.51	41	40	41	40	y	0.54	78	66	78	66	y	0.56	67	52	67	52	y	0.51	64	62	64	62	y	ENSMUSG00000026150.15	Mff	chr1	protein_coding	mitochondrial fission factor
known_NIR_1018	chr1	82713228;82719697	82719539;82728241	+	82713228	82728241	cassetteExon	ENSMUST00000160972.8	known	0.19	12.5	54	25;0	54	n	0.10	6.0	56	11;1	56	n	0.30	25.0	58	50;0	58	n	0.16	9.5	50	18;1	50	n	0.32	18.5	40	35;2	40	y	0.41	15.0	22	29;1	22	n	0.26	20.0	58	40;0	58	n	0.15	6.5	37	13;0	37	n	0.16	8.0	41	16;0	41	n	0.22	22.5	78	41;4	78	y	0.15	12.0	67	22;2	67	y	0.20	16.5	64	33;0	64	n	ENSMUSG00000026150.15	Mff	chr1	protein_coding	mitochondrial fission factor
known_NIR_1019	chr1	82713228;82719697	82719539;82728241	+	82713228;82724863	82724804;82728241	MXE	ENSMUST00000073025.12	known	0.23	12.5	41.0	25;0	13;69	n	0.13	6.0	39.5	11;1	21;58	n	0.34	25.0	48.0	50;0	11;85	n	0.22	9.5	33.0	18;1	18;48	n	0.31	18.5	41.5	35;2	16;67	y	0.37	15.0	25.5	29;1	11;40	n	0.24	20.0	63.0	40;0	34;92	n	0.21	6.5	24.0	13;0	12;36	n	0.24	8.0	26.0	16;0	12;40	n	0.36	22.5	40.5	41;4	15;66	y	0.27	12.0	33.0	22;2	14;52	y	0.28	16.5	43.5	33;0	25;62	n	ENSMUSG00000026150.15	Mff	chr1	protein_coding	mitochondrial fission factor
known_NIR_1020	chr1	82719697	82723245	+	82719697	82728241	A3SS	ENSMUST00000160744.2	known	1.00	4	0	4	0	n	0.75	3	1	3	1	n	1.00	15	0	15	0	n	0.80	4	1	4	1	n	0.75	6	2	6	2	n	0.83	5	1	5	1	n	1.00	2	0	2	0	n	1.00	4	0	4	0	n	1.00	8	0	8	0	n	0.60	6	4	6	4	y	0.50	2	2	2	2	n	1.00	5	0	5	0	n	ENSMUSG00000026150.15	Mff	chr1	protein_coding	mitochondrial fission factor
known_NIR_1021	chr1	82719697	82728241	+	82719697;82724863	82724804;82728241	ES	ENSMUST00000078332.13	known	0.00	0	54.0	0	39;69	n	0.03	1	34.5	1	11;58	n	0.00	0	67.0	0	49;85	n	0.03	1	30.0	1	12;48	n	0.04	2	52.0	2	37;67	y	0.03	1	31.0	1	22;40	n	0.00	0	69.0	0	46;92	n	0.00	0	23.0	0	10;36	n	0.00	0	28.5	0	17;40	n	0.08	4	45.0	4	24;66	y	0.05	2	36.5	2	21;52	y	0.00	0	40.5	0	19;62	n	ENSMUSG00000026150.15	Mff	chr1	protein_coding	mitochondrial fission factor
known_NIR_1022	chr1	82719697	82728241	+	82724863	82728241	5pMXE	ENSMUST00000162794.2	known	0.00	0	69	0	69	n	0.02	1	58	1	58	n	0.00	0	85	0	85	n	0.02	1	48	1	48	n	0.03	2	67	2	67	y	0.02	1	40	1	40	n	0.00	0	92	0	92	n	0.00	0	36	0	36	n	0.00	0	40	0	40	n	0.06	4	66	4	66	y	0.04	2	52	2	52	y	0.00	0	62	0	62	n	ENSMUSG00000026150.15	Mff	chr1	protein_coding	mitochondrial fission factor
known_NIR_1023	chr1	82719697;82723277	82723245;82724804	+	82719697	82724804	cassetteExon	ENSMUST00000078332.13	known	0.10	4.5	39	4;5	39	y	0.29	4.5	11	3;6	11	y	0.24	15.5	49	15;16	49	y	0.25	4.0	12	4;4	12	y	0.12	5.0	37	6;4	37	y	0.15	4.0	22	5;3	22	y	0.05	2.5	46	2;3	46	y	0.33	5.0	10	4;6	10	y	0.28	6.5	17	8;5	17	y	0.25	8.0	24	6;10	24	y	0.16	4.0	21	2;6	21	y	0.21	5.0	19	5;5	19	y	ENSMUSG00000026150.15	Mff	chr1	protein_coding	mitochondrial fission factor
known_NIR_1024	chr1	82854045	82859949	+	82854045	82857729	3pMXE	ENSMUST00000186043.2	known	0.00	0	26	0	26	n	0.05	1	21	1	21	n	0.00	0	47	0	47	n	0.00	0	30	0	30	n	0.00	0	38	0	38	n	0.00	0	28	0	28	n	0.05	2	35	2	35	y	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.04	1	26	1	26	n	0.07	1	13	1	13	n	0.00	0	22	0	22	n	ENSMUSG00000026159.14	Agfg1	chr1	protein_coding	ArfGAP with FG repeats 1
known_NIR_1025	chr1	82854045	82859949	+	82854045;82857848	82857729;82859949	ES	ENSMUST00000189220.7	known	0.00	0	29.5	0	26;33	n	0.05	1	19.0	1	21;17	n	0.00	0	58.5	0	47;70	n	0.00	0	26.0	0	30;22	n	0.00	0	44.5	0	38;51	n	0.00	0	30.5	0	28;33	n	0.06	2	32.5	2	35;30	y	0.00	0	20.0	0	14;26	n	0.00	0	17.0	0	16;18	n	0.03	1	36.0	1	26;46	n	0.06	1	16.5	1	13;20	n	0.00	0	29.0	0	22;36	n	ENSMUSG00000026159.14	Agfg1	chr1	protein_coding	ArfGAP with FG repeats 1
known_NIR_1026	chr1	82860158	82860965	+	82860158	82860902	A3SS	ENSMUST00000189220.7	known	0.00	0	24	0	24	n	0.00	0	20	0	20	n	0.02	1	53	1	53	n	0.00	0	35	0	35	n	0.00	0	38	0	38	n	0.00	0	25	0	25	n	0.15	5	28	5	28	y	0.00	0	12	0	12	n	0.17	4	20	4	20	y	0.00	0	33	0	33	n	0.06	1	17	1	17	n	0.14	3	18	3	18	y	ENSMUSG00000026159.14	Agfg1	chr1	protein_coding	ArfGAP with FG repeats 1
known_NIR_1027	chr1	82863908	82871145	+	82863908;82864188	82864096;82871145	ES	ENSMUST00000189220.7	known	0.00	0	28.5	0	30;27	n	0.09	2	21.0	2	18;24	y	0.14	9	56.0	9	67;45	y	0.14	4	25.0	4	26;24	y	0.13	7	47.5	7	50;45	y	0.10	3	28.0	3	27;29	y	0.25	10	30.5	10	28;33	y	0.09	3	29.0	3	25;33	y	0.12	2	14.5	2	17;12	y	0.14	6	37.5	6	44;31	y	0.09	2	20.0	2	19;21	y	0.05	2	37.5	2	42;33	y	ENSMUSG00000026159.14	Agfg1	chr1	protein_coding	ArfGAP with FG repeats 1
known_NIR_1028	chr1	82871303	82872197	+	82871303	82872203	A3SS	ENSMUST00000189220.7	known	1.00	16	0	16	0	n	0.94	30	2	30	2	y	0.75	36	12	36	12	y	0.86	19	3	19	3	y	0.76	35	11	35	11	y	0.72	21	8	21	8	y	0.94	34	2	34	2	y	0.70	21	9	21	9	y	0.67	14	7	14	7	y	0.79	38	10	38	10	y	0.96	27	1	27	1	n	0.79	27	7	27	7	y	ENSMUSG00000026159.14	Agfg1	chr1	protein_coding	ArfGAP with FG repeats 1
known_NIR_1029	chr1	84058519	84136953	-	84016228	84136953	A3SS	ENSMUST00000168574.9	known	0.17	38	190	38	190	y	0.19	33	140	33	140	y	0.07	26	352	26	352	y	0.10	29	248	29	248	y	0.12	53	386	53	386	y	0.05	13	236	13	236	y	0.16	58	299	58	299	y	0.09	28	300	28	300	y	0.15	34	193	34	193	y	0.12	31	236	31	236	y	0.19	29	122	29	122	y	0.12	28	200	28	200	y	ENSMUSG00000045658.17	Pid1	chr1	protein_coding	phosphotyrosine interaction domain containing 1
known_NIR_1030	chr1	84086108	84136953	-	84016228	84136953	A3SS	ENSMUST00000168574.9	known	0.04	7	190	7	190	y	0.03	4	140	4	140	y	0.10	40	352	40	352	y	0.02	6	248	6	248	y	0.03	11	386	11	386	y	0.09	23	236	23	236	y	0.04	12	299	12	299	y	0.04	12	300	12	300	y	0.00	0	193	0	193	n	0.02	6	236	6	236	y	0.02	3	122	3	122	y	0.01	3	200	3	200	y	ENSMUSG00000045658.17	Pid1	chr1	protein_coding	phosphotyrosine interaction domain containing 1
known_NIR_1031	chr1	84086108	84136953	-	84058519	84136953	A3SS	ENSMUST00000176720.2	known	0.16	7	38	7	38	y	0.11	4	33	4	33	y	0.61	40	26	40	26	y	0.17	6	29	6	29	y	0.17	11	53	11	53	y	0.64	23	13	23	13	y	0.17	12	58	12	58	y	0.30	12	28	12	28	y	0.00	0	34	0	34	n	0.16	6	31	6	31	y	0.09	3	29	3	29	y	0.10	3	28	3	28	y	ENSMUSG00000045658.17	Pid1	chr1	protein_coding	phosphotyrosine interaction domain containing 1
known_NIR_1032	chr1	84137099	84169061	-	84137099	84262062	A5SS	ENSMUST00000168574.9	known	0.00	0	168	0	168	n	0.01	1	148	1	148	n	0.01	3	354	3	354	y	0.00	0	194	0	194	n	0.00	0	404	0	404	n	0.00	1	271	1	271	n	0.00	0	223	0	223	n	0.01	2	233	2	233	y	0.00	0	163	0	163	n	0.01	2	211	2	211	y	0.01	1	130	1	130	n	0.01	1	183	1	183	n	ENSMUSG00000045658.17	Pid1	chr1	protein_coding	phosphotyrosine interaction domain containing 1
known_NIR_1033	chr1	84722891	84724899	-	84722906	84724899	A3SS	ENSMUST00000027421.13	known	0.10	7	63	7	63	y	0.15	7	41	7	41	y	0.14	15	89	15	89	y	0.08	5	61	5	61	y	0.14	16	100	16	100	y	0.14	8	50	8	50	y	0.19	14	58	14	58	y	0.07	6	75	6	75	y	0.12	7	50	7	50	y	0.10	11	94	11	94	y	0.33	18	37	18	37	y	0.14	13	83	13	83	y	ENSMUSG00000026219.15	Trip12	chr1	protein_coding	thyroid hormone receptor interactor 12
known_NIR_1034	chr1	84736767	84738484	-	84736848	84738484	A3SS	ENSMUST00000027421.13	known	0.00	0	26	0	26	n	0.00	0	11	0	11	n	0.00	0	59	0	59	n	0.03	1	39	1	39	n	0.00	0	63	0	63	n	0.00	0	31	0	31	n	0.03	1	38	1	38	n	0.00	0	30	0	30	n	0.00	0	35	0	35	n	0.05	2	40	2	40	y	0.00	0	28	0	28	n	0.06	2	32	2	32	y	ENSMUSG00000026219.15	Trip12	chr1	protein_coding	thyroid hormone receptor interactor 12
known_NIR_1035	chr1	84754133	84760548	-	84754133;84755228	84755145;84760548	ES	ENSMUST00000027421.13	known	0.00	0	31.5	0	31;32	n	0.04	1	22.5	1	16;29	n	0.01	1	75.0	1	79;71	n	0.02	1	53.5	1	54;53	n	0.00	0	69.5	0	72;67	n	0.00	0	59.5	0	51;68	n	0.00	0	51.5	0	49;54	n	0.03	2	58.0	2	56;60	y	0.00	0	33.0	0	30;36	n	0.00	0	76.5	0	70;83	n	0.00	0	32.5	0	29;36	n	0.00	0	63.0	0	61;65	n	ENSMUSG00000026219.15	Trip12	chr1	protein_coding	thyroid hormone receptor interactor 12
known_NIR_1036	chr1	84772048;84773536	84773411;84792544	-	84772048	84792544	cassetteExon	ENSMUST00000027421.13	known	0.25	6.5	19	7;6	19	y	0.07	1.5	20	3;0	20	n	0.07	4.0	53	4;4	53	y	0.16	7.5	38	7;8	38	y	0.29	20.5	49	24;17	49	y	0.21	9.0	33	10;8	33	y	0.21	11.5	44	12;11	44	y	0.15	6.5	37	6;7	37	y	0.25	7.5	22	6;9	22	y	0.18	8.0	37	8;8	37	y	0.21	6.5	25	5;8	25	y	0.11	4.5	38	7;2	38	y	ENSMUSG00000026219.15	Trip12	chr1	protein_coding	thyroid hormone receptor interactor 12
known_NIR_1037	chr1	84792690	84816332	-	84792690	84816950	A5SS	ENSMUST00000027421.13	known	0.00	0	18	0	18	n	0.00	0	1	0	1	n	0.00	0	38	0	38	n	0.06	1	16	1	16	n	0.04	1	27	1	27	n	0.00	0	15	0	15	n	0.00	0	26	0	26	n	0.00	0	17	0	17	n	0.00	0	13	0	13	n	0.18	2	9	2	9	y	0.00	0	11	0	11	n	0.04	1	25	1	25	n	ENSMUSG00000026219.15	Trip12	chr1	protein_coding	thyroid hormone receptor interactor 12
known_NIR_1038	chr1	84792690	84817955	-	84792690	84816950	5pMXE	ENSMUST00000027421.13	known	0.18	4	18	4	18	y	0.00	0	1	0	1	n	0.03	1	38	1	38	n	0.06	1	16	1	16	n	0.18	6	27	6	27	y	0.12	2	15	2	15	y	0.04	1	26	1	26	n	0.11	2	17	2	17	y	0.13	2	13	2	13	y	0.18	2	9	2	9	y	0.08	1	11	1	11	n	0.00	0	25	0	25	n	ENSMUSG00000026219.15	Trip12	chr1	protein_coding	thyroid hormone receptor interactor 12
known_NIR_1039	chr1	85066537	85067248	-	85062865	85067248	A3SS	ENSMUST00000161724.8	known	0.00	0	22	0	22	n	0.00	0	22	0	22	n	0.04	1	25	1	25	n	0.00	0	29	0	29	n	0.00	0	26	0	26	n	0.00	0	17	0	17	n	0.00	0	36	0	36	n	0.00	0	17	0	17	n	0.00	0	28	0	28	n	0.00	0	50	0	50	n	0.00	0	34	0	34	n	0.04	2	43	2	43	y	ENSMUSG00000089844.8	A530032D15Rik	chr1	protein_coding	RIKEN cDNA A530032D15Rik gene
known_NIR_1040	chr1	85563327	85565548	+	85563327	85565545	A3SS	ENSMUST00000080204.11	known	0.00	0	3	0	3	n	0.67	2	1	2	1	n	0.33	1	2	1	2	n	1.00	3	0	3	0	n	0.60	6	4	6	4	y	0.50	2	2	2	2	n	0.00	0	3	0	3	n	1.00	2	0	2	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	ENSMUSG00000070031.12	Sp140	chr1	protein_coding	Sp140 nuclear body protein
known_NIR_1041	chr1	85606830	85619696	+	85606830;85608860	85608807;85619696	ES	ENSMUST00000155094.8	known	0.40	2	3.0	2	3;3	n	0.00	0	5.5	0	9;2	n	0.24	2	6.5	2	7;6	y	0.00	0	4.5	0	6;3	n	0.25	2	6.0	2	9;3	y	0.50	1	1.0	1	1;1	n	0.38	4	6.5	4	7;6	y	0.00	0	4.0	0	3;5	n	0.44	2	2.5	2	4;1	n	0.36	2	3.5	2	2;5	n	0.00	0	3.5	0	3;4	n	0.00	0	5.0	0	5;5	n	ENSMUSG00000026222.17	Sp100	chr1	protein_coding	nuclear antigen Sp100
known_NIR_1042	chr1	85606830	85621980	+	85606830;85608860	85608807;85621980	ES	ENSMUST00000153574.8	known	0.33	1	2.0	1	3;1	n	0.27	2	5.5	2	9;2	y	0.00	0	3.5	0	7;0	n	0.00	0	3.5	0	6;1	n	0.00	0	5.0	0	9;1	n	0.67	1	0.5	1	1;0	n	0.40	3	4.5	3	7;2	y	0.00	0	1.5	0	3;0	n	0.00	0	2.5	0	4;1	n	0.00	0	2.0	0	2;2	n	0.57	2	1.5	2	3;0	n	0.00	0	2.5	0	5;0	n	ENSMUSG00000026222.17	Sp100	chr1	protein_coding	nuclear antigen Sp100
known_NIR_1043	chr1	85606830	85621980	+	85606830;85619770	85619696;85621980	ES	ENSMUST00000147552.8	known	0.20	1	4.0	1	2;6	n	0.33	2	4.0	2	0;8	n	0.00	0	9.0	0	2;16	n	0.00	0	2.0	0	0;4	n	0.00	0	4.5	0	2;7	n	0.29	1	2.5	1	1;4	n	0.32	3	6.5	3	4;9	y	0.00	0	0.5	0	0;1	n	0.00	0	2.5	0	2;3	n	0.00	0	2.5	0	2;3	n	0.57	2	1.5	2	0;3	n	0.00	0	7.0	0	0;14	n	ENSMUSG00000026222.17	Sp100	chr1	protein_coding	nuclear antigen Sp100
known_NIR_1044	chr1	85606830;85608860	85608807;85621980	+	85606830;85619770	85619696;85621980	MXE	ENSMUST00000147552.8	known	0.33	2.0	4.0	3;1	2;6	n	0.58	5.5	4.0	9;2	0;8	n	0.28	3.5	9.0	7;0	2;16	n	0.64	3.5	2.0	6;1	0;4	n	0.53	5.0	4.5	9;1	2;7	n	0.17	0.5	2.5	1;0	1;4	n	0.41	4.5	6.5	7;2	4;9	y	0.75	1.5	0.5	3;0	0;1	n	0.50	2.5	2.5	4;1	2;3	n	0.44	2.0	2.5	2;2	2;3	n	0.50	1.5	1.5	3;0	0;3	n	0.26	2.5	7.0	5;0	0;14	n	ENSMUSG00000026222.17	Sp100	chr1	protein_coding	nuclear antigen Sp100
known_NIR_1045	chr1	85608860	85621980	+	85608860;85619770	85619696;85621980	ES	ENSMUST00000155094.8	known	0.18	1	4.5	1	3;6	n	0.29	2	5.0	2	2;8	y	0.00	0	11.0	0	6;16	n	0.22	1	3.5	1	3;4	n	0.17	1	5.0	1	3;7	n	0.00	0	2.5	0	1;4	n	0.21	2	7.5	2	6;9	y	0.00	0	3.0	0	5;1	n	0.33	1	2.0	1	1;3	n	0.33	2	4.0	2	5;3	y	0.00	0	3.5	0	4;3	n	0.00	0	9.5	0	5;14	n	ENSMUSG00000026222.17	Sp100	chr1	protein_coding	nuclear antigen Sp100
known_NIR_1046	chr1	85635846	85636714	+	85629164	85636714	A5SS	ENSMUST00000153574.8	known	0.83	5	1	5	1	n	0.83	5	1	5	1	n	1.00	10	0	10	0	n	0.89	8	1	8	1	n	0.88	14	2	14	2	y	0.71	5	2	5	2	n	1.00	6	0	6	0	n	1.00	6	0	6	0	n	0.88	7	1	7	1	n	1.00	3	0	3	0	n	1.00	5	0	5	0	n	1.00	14	0	14	0	n	ENSMUSG00000026222.17	Sp100	chr1	protein_coding	nuclear antigen Sp100
known_NIR_1047	chr1	85723194	85746078	+	85721542	85746078	A5SS	ENSMUST00000113360.8	known	0.07	4	53	4	53	y	0.00	0	25	0	25	n	0.06	5	82	5	82	y	0.08	6	68	6	68	y	0.16	11	58	11	58	y	0.16	8	41	8	41	y	0.09	7	69	7	69	y	0.19	9	38	9	38	y	0.10	4	36	4	36	y	0.13	10	65	10	65	y	0.07	3	43	3	43	y	0.02	1	64	1	64	n	ENSMUSG00000036707.17	Cab39	chr1	protein_coding	calcium binding protein 39
known_NIR_1048	chr1	85974294	85976310	+	85974294	85976313	A3SS	ENSMUST00000027429.11	known	0.40	42	64	42	64	y	0.37	47	79	47	79	y	0.40	38	58	38	58	y	0.34	64	127	64	127	y	0.35	95	176	95	176	y	0.41	37	54	37	54	y	0.36	62	110	62	110	y	0.36	47	82	47	82	y	0.38	36	60	36	60	y	0.30	67	160	67	160	y	0.36	50	88	50	88	y	0.32	58	121	58	121	y	ENSMUSG00000026227.12	2810459M11Rik	chr1	protein_coding	RIKEN cDNA 2810459M11 gene
known_NIR_1049	chr1	85992728	85998305	+	85992527	85998305	A5SS	ENSMUST00000147807.8	known	0.00	0	62	0	62	n	0.00	0	45	0	45	n	0.02	2	124	2	124	y	0.03	4	127	4	127	y	0.00	0	154	0	154	n	0.00	0	58	0	58	n	0.03	3	94	3	94	y	0.00	0	52	0	52	n	0.04	3	74	3	74	y	0.02	2	87	2	87	y	0.02	1	58	1	58	n	0.01	1	113	1	113	n	ENSMUSG00000026229.18	Psmd1	chr1	protein_coding	proteasome (prosome, macropain) 26S subunit, non-ATPase, 1
known_NIR_1050	chr1	86135765	86140775	+	86135765	86140772	A3SS	ENSMUST00000123618.8	known	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.14	1	6	1	6	n	0.14	3	18	3	18	y	0.33	1	2	1	2	n	0.06	1	15	1	15	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.05	1	18	1	18	n	0.00	0	5	0	5	n	0.00	0	15	0	15	n	ENSMUSG00000062590.14	Armc9	chr1	protein_coding	armadillo repeat containing 9
known_NIR_1051	chr1	86140827;86146620	86146570;86172288	+	86140827	86172288	cassetteExon	ENSMUST00000123618.8	known	0.00	0.0	5	0;0	5	n	0.11	0.5	4	0;1	4	n	0.00	0.0	12	0;0	12	n	0.00	0.0	8	0;0	8	n	0.00	0.0	10	0;0	10	n	0.00	0.0	4	0;0	4	n	0.07	1.0	14	0;2	14	n	0.00	0.0	7	0;0	7	n	0.27	1.5	4	0;3	4	n	0.21	3.0	11	3;3	11	y	0.54	3.5	3	3;4	3	y	0.00	0.0	23	0;0	23	n	ENSMUSG00000062590.14	Armc9	chr1	protein_coding	armadillo repeat containing 9
known_NIR_1052	chr1	86172392	86184948	+	86172392;86180114	86179999;86184948	ES	ENSMUST00000135973.8	known	0.00	0	5.0	0	6;4	n	0.00	0	3.0	0	3;3	n	0.00	0	4.0	0	4;4	n	0.18	1	4.5	1	4;5	n	0.00	0	5.0	0	4;6	n	0.00	0	2.5	0	1;4	n	0.00	0	4.0	0	2;6	n	0.29	1	2.5	1	2;3	n	0.00	0	3.0	0	1;5	n	0.33	2	4.0	2	5;3	y	0.33	2	4.0	2	5;3	y	0.00	0	4.0	0	3;5	n	ENSMUSG00000062590.14	Armc9	chr1	protein_coding	armadillo repeat containing 9
known_NIR_1053	chr1	86285945	86286289	-	86285945	86286928	A5SS	ENSMUST00000027438.8	known	0.01	1	188	1	188	n	0.01	2	181	2	181	y	0.00	1	332	1	332	n	0.00	1	262	1	262	n	0.01	2	295	2	295	y	0.00	0	116	0	116	n	0.01	2	233	2	233	y	0.01	1	151	1	151	n	0.00	0	148	0	148	n	0.00	0	270	0	270	n	0.00	0	244	0	244	n	0.01	4	299	4	299	y	ENSMUSG00000026234.13	Ncl	chr1	protein_coding	nucleolin
known_NIR_1054	chr1	86456966	86457453	+	86456966	86457178	3pMXE	ENSMUST00000188699.7	known	0.00	0	711	0	711	n	0.00	4	801	4	801	y	0.01	6	806	6	806	y	0.00	3	720	3	720	y	0.00	2	793	2	793	y	0.00	1	430	1	430	n	0.00	0	845	0	845	n	0.00	2	485	2	485	y	0.00	0	684	0	684	n	0.00	3	1143	3	1143	y	0.00	2	842	2	842	y	0.00	3	1078	3	1078	y	ENSMUSG00000026238.15	Ptma	chr1	protein_coding	prothymosin alpha
known_NIR_1055	chr1	86456966	86457453	+	86456966;86457274	86457178;86457453	ES	ENSMUST00000045897.15	known	0.00	0	577.0	0	711;443	n	0.01	4	683.5	4	801;566	y	0.01	6	731.0	6	806;656	y	0.00	3	601.0	3	720;482	y	0.00	2	649.0	2	793;505	y	0.00	1	401.0	1	430;372	n	0.00	0	688.5	0	845;532	n	0.01	2	391.5	2	485;298	y	0.00	0	597.0	0	684;510	n	0.00	3	961.5	3	1143;780	y	0.00	2	749.0	2	842;656	y	0.00	3	918.0	3	1078;758	y	ENSMUSG00000026238.15	Ptma	chr1	protein_coding	prothymosin alpha
known_NIR_1056	chr1	86457526	86457726	+	86457526	86457687	A3SS	ENSMUST00000045897.15	known	0.00	0	810	0	810	n	0.00	0	954	0	954	n	0.00	0	1046	0	1046	n	0.00	0	754	0	754	n	0.00	0	818	0	818	n	0.00	0	583	0	583	n	0.00	0	928	0	928	n	0.00	0	559	0	559	n	0.00	0	769	0	769	n	0.03	40	1307	40	1307	y	0.00	0	1108	0	1108	n	0.00	0	1203	0	1203	n	ENSMUSG00000026238.15	Ptma	chr1	protein_coding	prothymosin alpha
known_NIR_1057	chr1	86520088	86526725	+	86520088;86524561	86524473;86526725	ES	ENSMUST00000121534.8	known	0.10	2	18.5	2	15;22	y	0.07	1	12.5	1	12;13	n	0.00	0	17.5	0	14;21	n	0.05	1	20.0	1	19;21	n	0.05	2	36.0	2	28;44	y	0.00	0	11.0	0	13;9	n	0.00	0	30.0	0	31;29	n	0.00	0	19.5	0	16;23	n	0.12	2	14.5	2	7;22	y	0.11	3	23.5	3	19;28	y	0.04	1	23.5	1	24;23	n	0.00	0	31.5	0	25;38	n	ENSMUSG00000026240.13	Cops7b	chr1	protein_coding	COP9 signalosome subunit 7B
known_NIR_1058	chr1	86673220	86681949	+	86673220	86675251	3pMXE	ENSMUST00000188121.7	known	0.77	17	5	17	5	y	1.00	11	0	11	0	n	1.00	19	0	19	0	n	0.94	16	1	16	1	n	0.91	21	2	21	2	y	1.00	17	0	17	0	n	1.00	15	0	15	0	n	0.88	15	2	15	2	y	1.00	10	0	10	0	n	0.92	11	1	11	1	n	1.00	15	0	15	0	n	1.00	14	0	14	0	n	ENSMUSG00000053333.16	Dis3l2	chr1	protein_coding	DIS3 like 3'-5' exoribonuclease 2
known_NIR_1059	chr1	86688111	86748944	+	86688111;86719179	86719138;86748944	ES	ENSMUST00000168237.8	known	0.79	17	4.5	17	7;2	y	0.88	7	1.0	7	1;1	n	0.83	17	3.5	17	2;5	y	0.95	10	0.5	10	0;1	n	0.85	14	2.5	14	2;3	y	0.96	11	0.5	11	0;1	n	0.82	9	2.0	9	1;3	n	0.91	16	1.5	16	2;1	n	0.63	6	3.5	6	3;4	y	0.90	14	1.5	14	1;2	n	1.00	11	0.0	11	0;0	n	0.96	11	0.5	11	0;1	n	ENSMUSG00000053333.16	Dis3l2	chr1	protein_coding	DIS3 like 3'-5' exoribonuclease 2
known_NIR_1060	chr1	86688111	86748944	+	86688111;86740311	86740234;86748944	ES	ENSMUST00000190618.7	known	1.00	17	0.0	17	0;0	n	1.00	7	0.0	7	0;0	n	1.00	17	0.0	17	0;0	n	0.87	10	1.5	10	0;3	n	1.00	14	0.0	14	0;0	n	1.00	11	0.0	11	0;0	n	1.00	9	0.0	9	0;0	n	0.97	16	0.5	16	1;0	n	0.63	6	3.5	6	4;3	y	1.00	14	0.0	14	0;0	n	1.00	11	0.0	11	0;0	n	1.00	11	0.0	11	0;0	n	ENSMUSG00000053333.16	Dis3l2	chr1	protein_coding	DIS3 like 3'-5' exoribonuclease 2
known_NIR_1061	chr1	86688111;86740311	86740234;86748944	+	86688111;86719179	86719138;86748944	MXE	ENSMUST00000168237.8	known	0.00	0.0	4.5	0;0	7;2	n	0.00	0.0	1.0	0;0	1;1	n	0.00	0.0	3.5	0;0	2;5	n	0.75	1.5	0.5	0;3	0;1	n	0.00	0.0	2.5	0;0	2;3	n	0.00	0.0	0.5	0;0	0;1	n	0.00	0.0	2.0	0;0	1;3	n	0.25	0.5	1.5	1;0	2;1	n	0.50	3.5	3.5	4;3	3;4	y	0.00	0.0	1.5	0;0	1;2	n	-	-	-	-	-	-	0.00	0.0	0.5	0;0	0;1	n	ENSMUSG00000053333.16	Dis3l2	chr1	protein_coding	DIS3 like 3'-5' exoribonuclease 2
known_NIR_1062	chr1	87141741	87147303	+	87142217	87147303	A5SS	ENSMUST00000113230.8	known	0.36	49	89	49	89	y	0.31	34	74	34	74	y	0.15	36	197	36	197	y	0.34	54	107	54	107	y	0.31	64	144	64	144	y	0.26	30	86	30	86	y	0.30	58	137	58	137	y	0.18	21	96	21	96	y	0.36	55	97	55	97	y	0.27	50	135	50	135	y	0.28	44	114	44	114	y	0.36	57	102	57	102	y	ENSMUSG00000026254.18	Eif4e2	chr1	protein_coding	eukaryotic translation initiation factor 4E member 2
known_NIR_1063	chr1	87141741;87142217	87142068;87147303	+	87141741	87147303	cassetteExon	ENSMUST00000113232.8	known	0.48	44.5	49	0;89	49	n	0.52	37.0	34	0;74	34	n	0.73	99.0	36	1;197	36	n	0.50	53.5	54	0;107	54	n	0.53	73.0	64	2;144	64	y	0.59	43.0	30	0;86	30	n	0.54	68.5	58	0;137	58	n	0.70	48.0	21	0;96	21	n	0.47	48.5	55	0;97	55	n	0.57	67.5	50	0;135	50	n	0.56	57.0	44	0;114	44	n	0.47	51.0	57	0;102	57	n	ENSMUSG00000026254.18	Eif4e2	chr1	protein_coding	eukaryotic translation initiation factor 4E member 2
known_NIR_1064	chr1	87153955	87160125	+	87153955	87155523	3pMXE	ENSMUST00000113233.8	known	0.03	4	122	4	122	y	0.02	4	169	4	169	y	0.01	3	212	3	212	y	0.02	2	127	2	127	y	0.02	4	172	4	172	y	0.03	3	112	3	112	y	0.03	5	181	5	181	y	0.04	4	98	4	98	y	0.02	2	117	2	117	y	0.03	5	192	5	192	y	0.02	3	190	3	190	y	0.02	3	155	3	155	y	ENSMUSG00000026254.18	Eif4e2	chr1	protein_coding	eukaryotic translation initiation factor 4E member 2
known_NIR_1065	chr1	87153955	87165568	+	87153955	87155523	3pMXE	ENSMUST00000113233.8	known	0.13	19	122	19	122	y	0.11	21	169	21	169	y	0.14	34	212	34	212	y	0.20	31	127	31	127	y	0.15	31	172	31	172	y	0.10	12	112	12	112	y	0.15	32	181	32	181	y	0.11	12	98	12	98	y	0.16	22	117	22	117	y	0.08	16	192	16	192	y	0.13	29	190	29	190	y	0.14	25	155	25	155	y	ENSMUSG00000026254.18	Eif4e2	chr1	protein_coding	eukaryotic translation initiation factor 4E member 2
known_NIR_1066	chr1	87153955;87160203	87160125;87165568	+	87153955	87165568	cassetteExon	ENSMUST00000076362.12	known	0.17	4.0	19	4;4	19	y	0.18	4.5	21	4;5	21	y	0.11	4.0	34	3;5	34	y	0.05	1.5	31	2;1	31	n	0.07	2.5	31	4;1	31	n	0.11	1.5	12	3;0	12	n	0.22	9.0	32	5;13	32	y	0.23	3.5	12	4;3	12	y	0.08	2.0	22	2;2	22	y	0.14	2.5	16	5;0	16	n	0.11	3.5	29	3;4	29	y	0.12	3.5	25	3;4	25	y	ENSMUSG00000026254.18	Eif4e2	chr1	protein_coding	eukaryotic translation initiation factor 4E member 2
known_NIR_1067	chr1	87282208	87282703	+	87282208	87282693	A3SS	ENSMUST00000174846.8	known	0.40	2	3	2	3	n	0.67	2	1	2	1	n	0.60	3	2	3	2	n	0.33	5	10	5	10	y	1.00	2	0	2	0	n	0.00	0	3	0	3	n	0.22	2	7	2	7	n	0.86	6	1	6	1	n	1.00	2	0	2	0	n	1.00	7	0	7	0	n	-	-	-	-	-	-	0.25	2	6	2	6	n	ENSMUSG00000048000.16	Gigyf2	chr1	protein_coding	GRB10 interacting GYF protein 2
known_NIR_1068	chr1	87282208	87282703	+	87282208	87291826	A3SS	ENSMUST00000027475.15	known	0.29	2	5	2	5	n	0.40	2	3	2	3	n	0.11	3	25	3	25	y	0.24	5	16	5	16	y	0.07	2	26	2	26	y	0.00	0	14	0	14	n	0.07	2	26	2	26	y	0.25	6	18	6	18	y	0.15	2	11	2	11	y	0.17	7	33	7	33	y	0.00	0	9	0	9	n	0.06	2	29	2	29	y	ENSMUSG00000048000.16	Gigyf2	chr1	protein_coding	GRB10 interacting GYF protein 2
known_NIR_1069	chr1	87282208	87291826	+	87282208	87282693	3pMXE	ENSMUST00000174846.8	known	0.62	5	3	5	3	n	0.75	3	1	3	1	n	0.93	25	2	25	2	y	0.62	16	10	16	10	y	1.00	26	0	26	0	n	0.82	14	3	14	3	y	0.79	26	7	26	7	y	0.95	18	1	18	1	n	1.00	11	0	11	0	n	1.00	33	0	33	0	n	1.00	9	0	9	0	n	0.83	29	6	29	6	y	ENSMUSG00000048000.16	Gigyf2	chr1	protein_coding	GRB10 interacting GYF protein 2
known_NIR_1070	chr1	87301833	87306694	+	87301833	87331389	A3SS	ENSMUST00000164992.9	known	1.00	6	0	6	0	n	1.00	3	0	3	0	n	0.86	24	4	24	4	y	0.80	8	2	8	2	y	0.91	21	2	21	2	y	0.60	3	2	3	2	n	1.00	9	0	9	0	n	0.75	12	4	12	4	y	0.88	7	1	7	1	n	0.95	18	1	18	1	n	1.00	4	0	4	0	n	0.89	16	2	16	2	y	ENSMUSG00000048000.16	Gigyf2	chr1	protein_coding	GRB10 interacting GYF protein 2
known_NIR_1071	chr1	87307730	87331389	+	87301833	87331389	A5SS	ENSMUST00000164992.9	known	1.00	10	0	10	0	n	1.00	5	0	5	0	n	0.89	33	4	33	4	y	0.89	17	2	17	2	y	0.89	16	2	16	2	y	0.83	10	2	10	2	y	1.00	17	0	17	0	n	0.87	26	4	26	4	y	0.88	7	1	7	1	n	0.94	15	1	15	1	n	1.00	9	0	9	0	n	0.91	21	2	21	2	y	ENSMUSG00000048000.16	Gigyf2	chr1	protein_coding	GRB10 interacting GYF protein 2
known_NIR_1072	chr1	87331568	87334724	+	87331568	87334706	A3SS	ENSMUST00000027475.15	known	0.53	9	8	9	8	y	0.55	6	5	6	5	y	0.29	12	29	12	29	y	0.60	12	8	12	8	y	0.15	5	29	5	29	y	0.33	6	12	6	12	y	0.13	2	13	2	13	y	0.23	7	23	7	23	y	0.35	6	11	6	11	y	0.18	4	18	4	18	y	0.44	7	9	7	9	y	0.48	12	13	12	13	y	ENSMUSG00000048000.16	Gigyf2	chr1	protein_coding	GRB10 interacting GYF protein 2
known_NIR_1073	chr1	87335177	87335260	+	87335177	87335257	A3SS	ENSMUST00000027475.15	known	0.17	3	15	3	15	y	0.33	4	8	4	8	y	0.02	1	43	1	43	n	0.10	2	19	2	19	y	0.05	2	36	2	36	y	0.13	2	13	2	13	y	0.23	7	23	7	23	y	0.09	3	30	3	30	y	0.00	0	16	0	16	n	0.09	3	32	3	32	y	0.00	0	20	0	20	n	0.15	4	22	4	22	y	ENSMUSG00000048000.16	Gigyf2	chr1	protein_coding	GRB10 interacting GYF protein 2
known_NIR_1074	chr1	87360920	87361402	+	87356450	87361402	A5SS	ENSMUST00000027475.15	known	0.00	0	31	0	31	n	0.00	0	21	0	21	n	0.00	0	47	0	47	n	0.00	0	25	0	25	n	0.04	2	50	2	50	y	0.00	0	18	0	18	n	0.00	0	34	0	34	n	0.00	0	31	0	31	n	0.00	0	25	0	25	n	0.00	0	30	0	30	n	0.00	0	25	0	25	n	0.00	0	26	0	26	n	ENSMUSG00000048000.16	Gigyf2	chr1	protein_coding	GRB10 interacting GYF protein 2
known_NIR_1075	chr1	87368644	87371367	+	87368644	87369733	3pMXE	ENSMUST00000173235.8	known	0.00	0	39	0	39	n	0.00	0	23	0	23	n	0.06	3	48	3	48	y	0.00	0	29	0	29	n	0.00	0	47	0	47	n	0.00	0	28	0	28	n	0.00	0	52	0	52	n	0.09	3	32	3	32	y	0.00	0	25	0	25	n	0.00	0	49	0	49	n	0.03	1	29	1	29	n	0.05	2	41	2	41	y	ENSMUSG00000048000.16	Gigyf2	chr1	protein_coding	GRB10 interacting GYF protein 2
known_NIR_1076	chr1	87368644	87371367	+	87368644;87369887	87369733;87371367	ES	ENSMUST00000027475.15	known	0.00	0	39.0	0	39;39	n	0.00	0	26.5	0	23;30	n	0.05	3	59.5	3	48;71	y	0.00	0	44.5	0	29;60	n	0.00	0	45.0	0	47;43	n	0.00	0	35.0	0	28;42	n	0.00	0	53.5	0	52;55	n	0.07	3	42.0	3	32;52	y	0.00	0	29.5	0	25;34	n	0.00	0	53.0	0	49;57	n	0.03	1	32.5	1	29;36	n	0.04	2	55.0	2	41;69	y	ENSMUSG00000048000.16	Gigyf2	chr1	protein_coding	GRB10 interacting GYF protein 2
known_NIR_1077	chr1	87437109	87468381	-	87437109	87437815	5pMXE	ENSMUST00000027477.15	known	0.79	30	8	30	8	y	0.90	26	3	26	3	y	0.75	3	1	3	1	n	0.80	40	10	40	10	y	0.97	39	1	39	1	n	1.00	5	0	5	0	n	0.88	38	5	38	5	y	0.92	11	1	11	1	n	0.89	33	4	33	4	y	0.96	54	2	54	2	y	0.96	53	2	53	2	y	0.86	37	6	37	6	y	ENSMUSG00000026259.15	Ngef	chr1	protein_coding	neuronal guanine nucleotide exchange factor
known_NIR_1078	chr1	87501848;87507257	87507156;87522600	+	87501848	87522600	cassetteExon	ENSMUST00000166259.8	known	0.67	2.0	1	1;3	1	n	0.60	1.5	1	1;2	1	n	0.00	0.0	1	0;0	1	n	0.75	3.0	1	4;2	1	n	0.00	0.0	1	0;0	1	n	1.00	0.5	0	0;1	0	n	0.50	1.0	1	0;2	1	n	1.00	1.0	0	1;1	0	n	0.50	2.0	2	3;1	2	n	0.75	6.0	2	8;4	2	y	0.25	1.0	3	1;1	3	n	0.27	1.5	4	2;1	4	n	ENSMUSG00000079434.9	Neu2	chr1	protein_coding	neuraminidase 2
known_NIR_1079	chr1	87701953	87703479	+	87701953	87702535	3pMXE	ENSMUST00000129431.2	known	0.69	36	16	36	16	y	0.54	22	19	22	19	y	0.70	46	20	46	20	y	0.54	33	28	33	28	y	0.52	47	43	47	43	y	0.45	18	22	18	22	y	0.48	28	30	28	30	y	0.49	26	27	26	27	y	0.57	26	20	26	20	y	0.66	45	23	45	23	y	0.67	35	17	35	17	y	0.64	44	25	44	25	y	ENSMUSG00000026289.16	Atg16l1	chr1	protein_coding	autophagy related 16-like 1 (S. cerevisiae)
known_NIR_1080	chr1	87701953	87703479	+	87701953;87702591	87702535;87703479	ES	ENSMUST00000027512.13	known	0.67	36	17.5	36	16;19	y	0.54	22	18.5	22	19;18	y	0.70	46	19.5	46	20;19	y	0.55	33	26.5	33	28;25	y	0.54	47	39.5	47	43;36	y	0.46	18	21.5	18	22;21	y	0.51	28	26.5	28	30;23	y	0.53	26	23.5	26	27;20	y	0.57	26	20.0	26	20;20	y	0.63	45	26.5	45	23;30	y	0.66	35	18.0	35	17;19	y	0.66	44	23.0	44	25;21	y	ENSMUSG00000026289.16	Atg16l1	chr1	protein_coding	autophagy related 16-like 1 (S. cerevisiae)
known_NIR_1081	chr1	87701953;87702850	87702535;87703479	+	87701953	87703479	cassetteExon	ENSMUST00000137638.8	known	0.18	8.0	36	16;0	36	n	0.30	9.5	22	19;0	22	n	0.19	10.5	46	20;1	46	n	0.30	14.0	33	28;0	33	n	0.32	22.5	47	43;2	47	y	0.38	11.0	18	22;0	18	n	0.36	15.5	28	30;1	28	n	0.34	13.5	26	27;0	26	n	0.28	10.0	26	20;0	26	n	0.20	11.5	45	23;0	45	n	0.20	8.5	35	17;0	35	n	0.22	12.5	44	25;0	44	n	ENSMUSG00000026289.16	Atg16l1	chr1	protein_coding	autophagy related 16-like 1 (S. cerevisiae)
known_NIR_1082	chr1	87702591;87702850	87702803;87703479	+	87702591	87703479	cassetteExon	ENSMUST00000027512.13	known	0.03	0.5	19	1;0	19	n	0.00	0.0	18	0;0	18	n	0.03	0.5	19	0;1	19	n	0.00	0.0	25	0;0	25	n	0.05	2.0	36	2;2	36	y	0.00	0.0	21	0;0	21	n	0.10	2.5	23	4;1	23	n	0.00	0.0	20	0;0	20	n	0.00	0.0	20	0;0	20	n	0.00	0.0	30	0;0	30	n	0.00	0.0	19	0;0	19	n	0.00	0.0	21	0;0	21	n	ENSMUSG00000026289.16	Atg16l1	chr1	protein_coding	autophagy related 16-like 1 (S. cerevisiae)
known_NIR_1083	chr1	87868028	87870105	+	87868028;87869221	87869091;87870105	ES	ENSMUST00000027517.14	known	0.60	6	4.0	6	2;6	y	0.57	6	4.5	6	7;2	y	0.32	7	15.0	7	14;16	y	0.46	8	9.5	8	9;10	y	0.32	7	15.0	7	15;15	y	0.36	5	9.0	5	7;11	y	0.55	16	13.0	16	9;17	y	0.69	9	4.0	9	2;6	y	0.58	7	5.0	7	3;7	y	0.44	16	20.5	16	19;22	y	0.64	7	4.0	7	5;3	y	0.49	11	11.5	11	11;12	y	ENSMUSG00000070738.11	Dgkd	chr1	protein_coding	diacylglycerol kinase, delta
known_NIR_1084	chr1	87895320	87896118	-	87895320	87903530	A5SS	ENSMUST00000189409.7	known	0.84	26	5	26	5	y	0.86	19	3	19	3	y	0.77	27	8	27	8	y	0.85	23	4	23	4	y	1.00	40	0	40	0	n	0.85	11	2	11	2	y	0.94	31	2	31	2	y	0.89	16	2	16	2	y	0.91	20	2	20	2	y	0.88	36	5	36	5	y	0.86	19	3	19	3	y	0.84	26	5	26	5	y	ENSMUSG00000005501.15	Usp40	chr1	protein_coding	ubiquitin specific peptidase 40
known_NIR_1085	chr1	87895320	87903530	-	87901856	87903530	A3SS&ES	ENSMUST00000040783.11	known	0.13	5	33	5	33	y	0.14	3	18	3	18	y	0.21	8	31	8	31	y	0.14	4	25	4	25	y	0.00	0	48	0	48	n	0.11	2	17	2	17	y	0.04	2	47	2	47	y	0.13	2	13	2	13	y	0.07	2	26	2	26	y	0.10	5	45	5	45	y	0.11	3	24	3	24	y	0.13	5	34	5	34	y	ENSMUSG00000005501.15	Usp40	chr1	protein_coding	ubiquitin specific peptidase 40
known_NIR_1086	chr1	87999400	88142766	+	87983386	88142766	A5SS	ENSMUST00000138182.8	known	1.00	83	0	83	0	n	0.95	62	3	62	3	y	1.00	17	0	17	0	n	0.99	87	1	87	1	n	1.00	54	0	54	0	n	1.00	3	0	3	0	n	1.00	68	0	68	0	n	1.00	16	0	16	0	n	0.98	128	2	128	2	y	1.00	104	0	104	0	n	1.00	139	0	139	0	n	0.99	183	1	183	1	n	ENSMUSG00000090165.9	Ugt1a10	chr1	protein_coding	UDP glycosyltransferase 1 family, polypeptide A10
known_NIR_1087	chr1	87999400	88142766	+	87984058	88142766	A5SS	ENSMUST00000113142.10	known	0.97	83	3	83	3	y	0.98	62	1	62	1	n	1.00	17	0	17	0	n	0.96	87	4	87	4	y	0.98	54	1	54	1	n	0.75	3	1	3	1	n	1.00	68	0	68	0	n	0.84	16	3	16	3	y	0.98	128	2	128	2	y	0.97	104	3	104	3	y	0.97	139	4	139	4	y	0.97	183	6	183	6	y	ENSMUSG00000090165.9	Ugt1a10	chr1	protein_coding	UDP glycosyltransferase 1 family, polypeptide A10
known_NIR_1088	chr1	88023700	88142766	+	87984058	88142766	A5SS	ENSMUST00000113142.10	known	0.73	8	3	8	3	y	0.80	4	1	4	1	n	1.00	2	0	2	0	n	0.50	4	4	4	4	n	0.86	6	1	6	1	n	0.50	1	1	1	1	n	1.00	5	0	5	0	n	0.25	1	3	1	3	n	0.71	5	2	5	2	n	0.79	11	3	11	3	y	0.50	4	4	4	4	n	0.74	17	6	17	6	y	ENSMUSG00000090165.9	Ugt1a10	chr1	protein_coding	UDP glycosyltransferase 1 family, polypeptide A10
known_NIR_1089	chr1	88023700	88142766	+	87999400	88142766	A5SS	ENSMUST00000073772.5	known	0.09	8	83	8	83	y	0.06	4	62	4	62	y	0.11	2	17	2	17	y	0.04	4	87	4	87	y	0.10	6	54	6	54	y	0.25	1	3	1	3	n	0.07	5	68	5	68	y	0.06	1	16	1	16	n	0.04	5	128	5	128	y	0.10	11	104	11	104	y	0.03	4	139	4	139	y	0.09	17	183	17	183	y	ENSMUSG00000090175.2	Ugt1a9	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A9
known_NIR_1090	chr1	88035521	88142766	+	87983386	88142766	A5SS	ENSMUST00000138182.8	known	1.00	182	0	182	0	n	0.98	157	3	157	3	y	1.00	96	0	96	0	n	0.99	166	1	166	1	n	1.00	207	0	207	0	n	1.00	96	0	96	0	n	1.00	254	0	254	0	n	1.00	109	0	109	0	n	0.99	149	2	149	2	y	1.00	242	0	242	0	n	1.00	206	0	206	0	n	1.00	219	1	219	1	n	ENSMUSG00000090165.9	Ugt1a10	chr1	protein_coding	UDP glycosyltransferase 1 family, polypeptide A10
known_NIR_1091	chr1	88035521	88142766	+	87984058	88142766	A5SS	ENSMUST00000113142.10	known	0.98	182	3	182	3	y	0.99	157	1	157	1	n	1.00	96	0	96	0	n	0.98	166	4	166	4	y	1.00	207	1	207	1	n	0.99	96	1	96	1	n	1.00	254	0	254	0	n	0.97	109	3	109	3	y	0.99	149	2	149	2	y	0.99	242	3	242	3	y	0.98	206	4	206	4	y	0.97	219	6	219	6	y	ENSMUSG00000090165.9	Ugt1a10	chr1	protein_coding	UDP glycosyltransferase 1 family, polypeptide A10
known_NIR_1092	chr1	88035521	88142766	+	87999400	88142766	A5SS	ENSMUST00000073772.5	known	0.69	182	83	182	83	y	0.72	157	62	157	62	y	0.85	96	17	96	17	y	0.66	166	87	166	87	y	0.79	207	54	207	54	y	0.97	96	3	96	3	y	0.79	254	68	254	68	y	0.87	109	16	109	16	y	0.54	149	128	149	128	y	0.70	242	104	242	104	y	0.60	206	139	206	139	y	0.54	219	183	219	183	y	ENSMUSG00000090175.2	Ugt1a9	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A9
known_NIR_1093	chr1	88035521	88142766	+	88023700	88142766	A5SS	ENSMUST00000058237.14	known	0.96	182	8	182	8	y	0.98	157	4	157	4	y	0.98	96	2	96	2	y	0.98	166	4	166	4	y	0.97	207	6	207	6	y	0.99	96	1	96	1	n	0.98	254	5	254	5	y	0.99	109	1	109	1	n	0.97	149	5	149	5	y	0.96	242	11	242	11	y	0.98	206	4	206	4	y	0.93	219	17	219	17	y	ENSMUSG00000090124.8	Ugt1a7c	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A7C
known_NIR_1094	chr1	88035521	88142766	+	88067053	88142766	A5SS&ES	ENSMUST00000113135.6	known	0.38	182	295	182	295	y	0.37	157	265	157	265	y	0.35	96	180	96	180	y	0.32	166	357	166	357	y	0.34	207	393	207	393	y	0.39	96	151	96	151	y	0.42	254	358	254	358	y	0.34	109	207	109	207	y	0.31	149	331	149	331	y	0.34	242	468	242	468	y	0.38	206	341	206	341	y	0.34	219	434	219	434	y	ENSMUSG00000090124.8	Ugt1a7c	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A7C
known_NIR_1095	chr1	88062657	88066940	+	88062657	88066195	A3SS	ENSMUST00000113134.8	known	1.00	16	0	16	0	n	0.78	14	4	14	4	y	0.94	15	1	15	1	n	1.00	19	0	19	0	n	1.00	27	0	27	0	n	1.00	11	0	11	0	n	1.00	21	0	21	0	n	0.85	11	2	11	2	y	0.89	24	3	24	3	y	0.96	26	1	26	1	n	0.93	14	1	14	1	n	0.95	38	2	38	2	y	ENSMUSG00000054545.18	Ugt1a6a	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A6A
known_NIR_1096	chr1	88067053	88142766	+	87983386	88142766	A5SS	ENSMUST00000138182.8	known	1.00	295	0	295	0	n	0.99	265	3	265	3	y	1.00	180	0	180	0	n	1.00	357	1	357	1	n	1.00	393	0	393	0	n	1.00	151	0	151	0	n	1.00	358	0	358	0	n	1.00	207	0	207	0	n	0.99	331	2	331	2	y	1.00	468	0	468	0	n	1.00	341	0	341	0	n	1.00	434	1	434	1	n	ENSMUSG00000090165.9	Ugt1a10	chr1	protein_coding	UDP glycosyltransferase 1 family, polypeptide A10
known_NIR_1097	chr1	88067053	88142766	+	87984058	88142766	A5SS	ENSMUST00000113142.10	known	0.99	295	3	295	3	y	1.00	265	1	265	1	n	1.00	180	0	180	0	n	0.99	357	4	357	4	y	1.00	393	1	393	1	n	0.99	151	1	151	1	n	1.00	358	0	358	0	n	0.99	207	3	207	3	y	0.99	331	2	331	2	y	0.99	468	3	468	3	y	0.99	341	4	341	4	y	0.99	434	6	434	6	y	ENSMUSG00000090165.9	Ugt1a10	chr1	protein_coding	UDP glycosyltransferase 1 family, polypeptide A10
known_NIR_1098	chr1	88067053	88142766	+	87999400	88142766	A5SS	ENSMUST00000073772.5	known	0.78	295	83	295	83	y	0.81	265	62	265	62	y	0.91	180	17	180	17	y	0.80	357	87	357	87	y	0.88	393	54	393	54	y	0.98	151	3	151	3	y	0.84	358	68	358	68	y	0.93	207	16	207	16	y	0.72	331	128	331	128	y	0.82	468	104	468	104	y	0.71	341	139	341	139	y	0.70	434	183	434	183	y	ENSMUSG00000090175.2	Ugt1a9	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A9
known_NIR_1099	chr1	88067053	88142766	+	88023700	88142766	A5SS	ENSMUST00000058237.14	known	0.97	295	8	295	8	y	0.99	265	4	265	4	y	0.99	180	2	180	2	y	0.99	357	4	357	4	y	0.98	393	6	393	6	y	0.99	151	1	151	1	n	0.99	358	5	358	5	y	1.00	207	1	207	1	n	0.99	331	5	331	5	y	0.98	468	11	468	11	y	0.99	341	4	341	4	y	0.96	434	17	434	17	y	ENSMUSG00000090124.8	Ugt1a7c	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A7C
known_NIR_1100	chr1	88129222	88142766	+	87983386	88142766	A5SS	ENSMUST00000138182.8	known	1.00	25	0	25	0	n	0.92	33	3	33	3	y	1.00	57	0	57	0	n	0.97	31	1	31	1	n	1.00	33	0	33	0	n	1.00	25	0	25	0	n	1.00	63	0	63	0	n	1.00	23	0	23	0	n	0.96	45	2	45	2	y	1.00	85	0	85	0	n	1.00	75	0	75	0	n	0.98	55	1	55	1	n	ENSMUSG00000090165.9	Ugt1a10	chr1	protein_coding	UDP glycosyltransferase 1 family, polypeptide A10
known_NIR_1101	chr1	88129222	88142766	+	87984058	88142766	A5SS	ENSMUST00000113142.10	known	0.89	25	3	25	3	y	0.97	33	1	33	1	n	1.00	57	0	57	0	n	0.89	31	4	31	4	y	0.97	33	1	33	1	n	0.96	25	1	25	1	n	1.00	63	0	63	0	n	0.88	23	3	23	3	y	0.96	45	2	45	2	y	0.97	85	3	85	3	y	0.95	75	4	75	4	y	0.90	55	6	55	6	y	ENSMUSG00000090165.9	Ugt1a10	chr1	protein_coding	UDP glycosyltransferase 1 family, polypeptide A10
known_NIR_1102	chr1	88129222	88142766	+	87999400	88142766	A5SS	ENSMUST00000073772.5	known	0.23	25	83	25	83	y	0.35	33	62	33	62	y	0.77	57	17	57	17	y	0.26	31	87	31	87	y	0.38	33	54	33	54	y	0.89	25	3	25	3	y	0.48	63	68	63	68	y	0.59	23	16	23	16	y	0.26	45	128	45	128	y	0.45	85	104	85	104	y	0.35	75	139	75	139	y	0.23	55	183	55	183	y	ENSMUSG00000090175.2	Ugt1a9	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A9
known_NIR_1103	chr1	88129222	88142766	+	88023700	88142766	A5SS	ENSMUST00000058237.14	known	0.76	25	8	25	8	y	0.89	33	4	33	4	y	0.97	57	2	57	2	y	0.89	31	4	31	4	y	0.85	33	6	33	6	y	0.96	25	1	25	1	n	0.93	63	5	63	5	y	0.96	23	1	23	1	n	0.90	45	5	45	5	y	0.89	85	11	85	11	y	0.95	75	4	75	4	y	0.76	55	17	55	17	y	ENSMUSG00000090124.8	Ugt1a7c	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A7C
known_NIR_1104	chr1	88129222	88142766	+	88035521	88142766	A5SS	ENSMUST00000113138.8	known	0.12	25	182	25	182	y	0.17	33	157	33	157	y	0.37	57	96	57	96	y	0.16	31	166	31	166	y	0.14	33	207	33	207	y	0.21	25	96	25	96	y	0.20	63	254	63	254	y	0.17	23	109	23	109	y	0.23	45	149	45	149	y	0.26	85	242	85	242	y	0.27	75	206	75	206	y	0.20	55	219	55	219	y	ENSMUSG00000090145.8	Ugt1a6b	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A6B
known_NIR_1105	chr1	88129222	88142766	+	88067053	88142766	A5SS	ENSMUST00000113135.6	known	0.08	25	295	25	295	y	0.11	33	265	33	265	y	0.24	57	180	57	180	y	0.08	31	357	31	357	y	0.08	33	393	33	393	y	0.14	25	151	25	151	y	0.15	63	358	63	358	y	0.10	23	207	23	207	y	0.12	45	331	45	331	y	0.15	85	468	85	468	y	0.18	75	341	75	341	y	0.11	55	434	55	434	y	ENSMUSG00000090124.8	Ugt1a7c	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A7C
known_NIR_1106	chr1	88140593	88142766	+	87983386	88142766	A5SS	ENSMUST00000138182.8	known	1.00	668	0	668	0	n	0.99	580	3	580	3	y	1.00	207	0	207	0	n	1.00	880	1	880	1	n	1.00	417	0	417	0	n	1.00	133	0	133	0	n	1.00	655	0	655	0	n	1.00	105	0	105	0	n	1.00	882	2	882	2	y	1.00	1605	0	1605	0	n	1.00	1037	0	1037	0	n	1.00	1027	1	1027	1	n	ENSMUSG00000090165.9	Ugt1a10	chr1	protein_coding	UDP glycosyltransferase 1 family, polypeptide A10
known_NIR_1107	chr1	88140593	88142766	+	87984058	88142766	A5SS	ENSMUST00000113142.10	known	1.00	668	3	668	3	y	1.00	580	1	580	1	n	1.00	207	0	207	0	n	1.00	880	4	880	4	y	1.00	417	1	417	1	n	0.99	133	1	133	1	n	1.00	655	0	655	0	n	0.97	105	3	105	3	y	1.00	882	2	882	2	y	1.00	1605	3	1605	3	y	1.00	1037	4	1037	4	y	0.99	1027	6	1027	6	y	ENSMUSG00000090165.9	Ugt1a10	chr1	protein_coding	UDP glycosyltransferase 1 family, polypeptide A10
known_NIR_1108	chr1	88140593	88142766	+	87999400	88142766	A5SS	ENSMUST00000073772.5	known	0.89	668	83	668	83	y	0.90	580	62	580	62	y	0.92	207	17	207	17	y	0.91	880	87	880	87	y	0.89	417	54	417	54	y	0.98	133	3	133	3	y	0.91	655	68	655	68	y	0.87	105	16	105	16	y	0.87	882	128	882	128	y	0.94	1605	104	1605	104	y	0.88	1037	139	1037	139	y	0.85	1027	183	1027	183	y	ENSMUSG00000090175.2	Ugt1a9	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A9
known_NIR_1109	chr1	88140593	88142766	+	88023700	88142766	A5SS	ENSMUST00000058237.14	known	0.99	668	8	668	8	y	0.99	580	4	580	4	y	0.99	207	2	207	2	y	1.00	880	4	880	4	y	0.99	417	6	417	6	y	0.99	133	1	133	1	n	0.99	655	5	655	5	y	0.99	105	1	105	1	n	0.99	882	5	882	5	y	0.99	1605	11	1605	11	y	1.00	1037	4	1037	4	y	0.98	1027	17	1027	17	y	ENSMUSG00000090124.8	Ugt1a7c	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A7C
known_NIR_1110	chr1	88140593	88142766	+	88035521	88142766	A5SS	ENSMUST00000113138.8	known	0.79	668	182	668	182	y	0.79	580	157	580	157	y	0.68	207	96	207	96	y	0.84	880	166	880	166	y	0.67	417	207	417	207	y	0.58	133	96	133	96	y	0.72	655	254	655	254	y	0.49	105	109	105	109	y	0.86	882	149	882	149	y	0.87	1605	242	1605	242	y	0.83	1037	206	1037	206	y	0.82	1027	219	1027	219	y	ENSMUSG00000090145.8	Ugt1a6b	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A6B
known_NIR_1111	chr1	88140593	88142766	+	88067053	88142766	A5SS	ENSMUST00000113135.6	known	0.69	668	295	668	295	y	0.69	580	265	580	265	y	0.53	207	180	207	180	y	0.71	880	357	880	357	y	0.51	417	393	417	393	y	0.47	133	151	133	151	y	0.65	655	358	655	358	y	0.34	105	207	105	207	y	0.73	882	331	882	331	y	0.77	1605	468	1605	468	y	0.75	1037	341	1037	341	y	0.70	1027	434	1027	434	y	ENSMUSG00000090124.8	Ugt1a7c	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A7C
known_NIR_1112	chr1	88140593	88142766	+	88129222	88142766	A5SS	ENSMUST00000049289.9	known	0.96	668	25	668	25	y	0.95	580	33	580	33	y	0.78	207	57	207	57	y	0.97	880	31	880	31	y	0.93	417	33	417	33	y	0.84	133	25	133	25	y	0.91	655	63	655	63	y	0.82	105	23	105	23	y	0.95	882	45	882	45	y	0.95	1605	85	1605	85	y	0.93	1037	75	1037	75	y	0.95	1027	55	1027	55	y	ENSMUSG00000090171.2	Ugt1a2	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A2
known_NIR_1113	chr1	88142897	88143860	+	88142897;88143604	88143517;88143860	ES	ENSMUST00000138182.8	known	0.01	8	1474.5	8	1408;1541	y	0.01	7	1246.0	7	1111;1381	y	0.01	4	711.0	4	683;739	y	0.01	16	1617.5	16	1495;1740	y	0.01	10	1296.5	10	1243;1350	y	0.00	1	465.0	1	456;474	n	0.01	16	1593.5	16	1462;1725	y	0.01	5	571.0	5	520;622	y	0.01	17	1818.0	17	1661;1975	y	0.01	27	2836.0	27	2599;3073	y	0.01	19	2128.0	19	1938;2318	y	0.01	19	2217.0	19	2067;2367	y	ENSMUSG00000090165.9	Ugt1a10	chr1	protein_coding	UDP glycosyltransferase 1 family, polypeptide A10
known_NIR_1114	chr1	88195748	88197043	-	88195748	88202764	A5SS	ENSMUST00000065420.12	known	0.97	78	2	78	2	y	0.97	69	2	69	2	y	0.95	104	5	104	5	y	0.95	128	7	128	7	y	0.93	128	10	128	10	y	0.89	84	10	84	10	y	0.84	88	17	88	17	y	0.97	73	2	73	2	y	0.91	111	11	111	11	y	0.88	114	15	114	15	y	0.97	115	4	115	4	y	0.90	95	11	95	11	y	ENSMUSG00000044783.17	Hjurp	chr1	protein_coding	Holliday junction recognition protein
known_NIR_1115	chr1	88200487	88202764	-	88195748	88202764	A3SS	ENSMUST00000065420.12	known	0.83	10	2	10	2	y	0.83	10	2	10	2	y	0.81	21	5	21	5	y	0.74	20	7	20	7	y	0.66	19	10	19	10	y	0.62	16	10	16	10	y	0.61	27	17	27	17	y	0.93	28	2	28	2	y	0.61	17	11	17	11	y	0.66	29	15	29	15	y	0.87	27	4	27	4	y	0.58	15	11	15	11	y	ENSMUSG00000044783.17	Hjurp	chr1	protein_coding	Holliday junction recognition protein
known_NIR_1116	chr1	88338950	88344960	+	88338950;88340080	88339973;88344960	ES	ENSMUST00000027518.12	known	0.00	0	360.0	0	380;340	n	0.00	2	403.0	2	409;397	y	0.00	0	126.0	0	127;125	n	0.01	2	371.5	2	405;338	y	0.00	0	343.0	0	352;334	n	0.00	0	152.0	0	157;147	n	0.00	0	415.5	0	441;390	n	0.00	0	138.0	0	160;116	n	0.00	1	348.0	1	362;334	n	0.00	0	574.0	0	612;536	n	0.00	0	461.5	0	483;440	n	0.00	0	273.5	0	278;269	n	ENSMUSG00000026295.13	Spp2	chr1	protein_coding	secreted phosphoprotein 2
known_NIR_1117	chr1	89509375	89532320	+	89383314	89532320	A5SS	ENSMUST00000027521.15	known	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.50	13	13	13	13	y	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.18	2	9	2	9	y	0.17	1	5	1	5	n	0.25	2	6	2	6	n	0.20	1	4	1	4	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000055013.17	Agap1	chr1	protein_coding	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
known_NIR_1118	chr1	89671618	89716885	+	89671618;89694186	89694028;89716885	ES	ENSMUST00000027521.15	known	0.14	1	6.0	1	6;6	n	0.33	3	6.0	3	10;2	y	0.21	6	23.0	6	27;19	y	0.24	2	6.5	2	8;5	y	0.13	1	6.5	1	10;3	n	0.28	4	10.5	4	12;9	y	0.07	1	12.5	1	20;5	n	0.10	1	9.0	1	14;4	n	0.00	0	7.5	0	4;11	n	0.44	4	5.0	4	6;4	y	0.25	1	3.0	1	4;2	n	0.00	0	12.5	0	13;12	n	ENSMUSG00000055013.17	Agap1	chr1	protein_coding	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
known_NIR_1119	chr1	89717046;89751656	89751579;89762156	+	89717046	89762156	cassetteExon	ENSMUST00000027521.15	known	0.00	0.0	4	0;0	4	n	0.14	0.5	3	1;0	3	n	0.19	3.5	15	4;3	15	y	0.00	0.0	12	0;0	12	n	0.07	1.0	14	2;0	14	n	0.02	0.5	20	0;1	20	n	0.00	0.0	9	0;0	9	n	0.00	0.0	10	0;0	10	n	0.25	1.0	3	1;1	3	n	0.00	0.0	6	0;0	6	n	0.00	0.0	5	0;0	5	n	0.05	0.5	10	0;1	10	n	ENSMUSG00000055013.17	Agap1	chr1	protein_coding	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
known_NIR_1120	chr1	90981445	90996285	+	90926615	90996285	A5SS	ENSMUST00000189505.7	known	1.00	32	0	32	0	n	1.00	21	0	21	0	n	1.00	62	0	62	0	n	0.98	48	1	48	1	n	0.93	65	5	65	5	y	1.00	32	0	32	0	n	0.93	41	3	41	3	y	1.00	46	0	46	0	n	1.00	34	0	34	0	n	1.00	46	0	46	0	n	1.00	23	0	23	0	n	1.00	41	0	41	0	n	ENSMUSG00000026305.16	Lrrfip1	chr1	protein_coding	leucine rich repeat (in FLII) interacting protein 1
known_NIR_1121	chr1	90996371	91001046	+	90996371	91028299	A3SS	ENSMUST00000068116.13	known	0.00	0	38	0	38	n	0.00	0	13	0	13	n	0.00	0	74	0	74	n	0.00	0	43	0	43	n	0.00	0	58	0	58	n	0.00	0	34	0	34	n	0.10	6	52	6	52	y	0.00	0	43	0	43	n	0.00	0	26	0	26	n	0.00	0	31	0	31	n	0.00	0	18	0	18	n	0.00	0	39	0	39	n	ENSMUSG00000026305.16	Lrrfip1	chr1	protein_coding	leucine rich repeat (in FLII) interacting protein 1
known_NIR_1122	chr1	90996371	91012668	+	90996371	91028299	A3SS	ENSMUST00000068116.13	known	0.00	0	38	0	38	n	0.07	1	13	1	13	n	0.01	1	74	1	74	n	0.00	0	43	0	43	n	0.02	1	58	1	58	n	0.03	1	34	1	34	n	0.04	2	52	2	52	y	0.07	3	43	3	43	y	0.00	0	26	0	26	n	0.06	2	31	2	31	y	0.18	4	18	4	18	y	0.00	0	39	0	39	n	ENSMUSG00000026305.16	Lrrfip1	chr1	protein_coding	leucine rich repeat (in FLII) interacting protein 1
known_NIR_1123	chr1	91021359	91028299	+	90996371	91028299	A5SS	ENSMUST00000068116.13	known	0.00	0	38	0	38	n	0.00	0	13	0	13	n	0.04	3	74	3	74	y	0.02	1	43	1	43	n	0.00	0	58	0	58	n	0.00	0	34	0	34	n	0.09	5	52	5	52	y	0.00	0	43	0	43	n	0.04	1	26	1	26	n	0.03	1	31	1	31	n	0.00	0	18	0	18	n	0.03	1	39	1	39	n	ENSMUSG00000026305.16	Lrrfip1	chr1	protein_coding	leucine rich repeat (in FLII) interacting protein 1
known_NIR_1124	chr1	91029032;91031040	91030969;91032849	+	91029032	91032849	cassetteExon	ENSMUST00000189505.7	known	0.00	0.0	42	0;0	42	n	0.00	0.0	23	0;0	23	n	0.03	3.0	90	4;2	90	y	0.00	0.0	40	0;0	40	n	0.02	1.5	89	0;3	89	n	0.00	0.0	48	0;0	48	n	0.06	4.0	60	3;5	60	y	0.00	0.0	49	0;0	49	n	0.00	0.0	36	0;0	36	n	0.02	1.0	53	1;1	53	n	0.00	0.0	35	0;0	35	n	0.02	1.5	61	1;2	61	n	ENSMUSG00000026305.16	Lrrfip1	chr1	protein_coding	leucine rich repeat (in FLII) interacting protein 1
known_NIR_1125	chr1	91035112	91039878	+	91035112	91036302	3pMXE	ENSMUST00000189505.7	known	1.00	51	0	51	0	n	1.00	35	0	35	0	n	1.00	89	0	89	0	n	1.00	52	0	52	0	n	1.00	79	0	79	0	n	1.00	46	0	46	0	n	0.96	55	2	55	2	y	1.00	67	0	67	0	n	1.00	46	0	46	0	n	1.00	58	0	58	0	n	1.00	30	0	30	0	n	1.00	85	0	85	0	n	ENSMUSG00000026305.16	Lrrfip1	chr1	protein_coding	leucine rich repeat (in FLII) interacting protein 1
known_NIR_1126	chr1	91038169	91039878	+	91035112	91039878	A5SS	ENSMUST00000068116.13	known	0.00	0	51	0	51	n	0.05	2	35	2	35	y	0.01	1	89	1	89	n	0.00	0	52	0	52	n	0.00	0	79	0	79	n	0.00	0	46	0	46	n	0.14	9	55	9	55	y	0.00	0	67	0	67	n	0.02	1	46	1	46	n	0.00	0	58	0	58	n	0.00	0	30	0	30	n	0.00	0	85	0	85	n	ENSMUSG00000026305.16	Lrrfip1	chr1	protein_coding	leucine rich repeat (in FLII) interacting protein 1
known_NIR_1127	chr1	91040019	91040375	+	91040019	91047863	A3SS	ENSMUST00000185531.7	known	0.25	1	3	1	3	n	0.25	1	3	1	3	n	0.43	3	4	3	4	n	0.46	6	7	6	7	y	0.11	1	8	1	8	n	0.18	2	9	2	9	y	0.00	0	21	0	21	n	0.31	4	9	4	9	y	0.75	3	1	3	1	n	0.27	3	8	3	8	y	0.29	2	5	2	5	n	0.17	1	5	1	5	n	ENSMUSG00000026305.16	Lrrfip1	chr1	protein_coding	leucine rich repeat (in FLII) interacting protein 1
known_NIR_1128	chr1	91040019	91042318	+	91040019	91047863	A3SS	ENSMUST00000185531.7	known	0.91	29	3	29	3	y	0.90	27	3	27	3	y	0.94	67	4	67	4	y	0.84	37	7	37	7	y	0.91	83	8	83	8	y	0.81	38	9	38	9	y	0.77	72	21	72	21	y	0.84	46	9	46	9	y	0.98	40	1	40	1	n	0.88	56	8	56	8	y	0.83	25	5	25	5	y	0.93	62	5	62	5	y	ENSMUSG00000026305.16	Lrrfip1	chr1	protein_coding	leucine rich repeat (in FLII) interacting protein 1
known_NIR_1129	chr1	91040019;91040436	91040375;91042318	+	91040019	91042318	cassetteExon	ENSMUST00000097649.10	known	0.09	3.0	29	1;5	29	n	0.04	1.0	27	1;1	27	n	0.03	2.0	67	3;1	67	n	0.07	3.0	37	6;0	37	n	0.01	0.5	83	1;0	83	n	0.03	1.0	38	2;0	38	n	0.00	0.0	72	0;0	72	n	0.04	2.0	46	4;0	46	n	0.07	3.0	40	3;3	40	y	0.03	1.5	56	3;0	56	n	0.04	1.0	25	2;0	25	n	0.01	0.5	62	1;0	62	n	ENSMUSG00000026305.16	Lrrfip1	chr1	protein_coding	leucine rich repeat (in FLII) interacting protein 1
known_NIR_1130	chr1	91040019;91040536	91040375;91042318	+	91040019	91042318	cassetteExon	ENSMUST00000097649.10	known	0.02	0.5	29	1;0	29	n	0.02	0.5	27	1;0	27	n	0.02	1.5	67	3;0	67	n	0.10	4.0	37	6;2	37	y	0.01	1.0	83	1;1	83	n	0.03	1.0	38	2;0	38	n	0.00	0.0	72	0;0	72	n	0.04	2.0	46	4;0	46	n	0.05	2.0	40	3;1	40	n	0.03	1.5	56	3;0	56	n	0.04	1.0	25	2;0	25	n	0.01	0.5	62	1;0	62	n	ENSMUSG00000026305.16	Lrrfip1	chr1	protein_coding	leucine rich repeat (in FLII) interacting protein 1
known_NIR_1131	chr1	91047742	91047863	+	91040019	91047863	A5SS	ENSMUST00000185531.7	known	0.62	5	3	5	3	n	0.70	7	3	7	3	y	0.43	3	4	3	4	n	0.22	2	7	2	7	n	0.43	6	8	6	8	y	0.25	3	9	3	9	y	0.19	5	21	5	21	y	0.10	1	9	1	9	n	0.89	8	1	8	1	n	0.43	6	8	6	8	y	0.17	1	5	1	5	n	0.67	10	5	10	5	y	ENSMUSG00000026305.16	Lrrfip1	chr1	protein_coding	leucine rich repeat (in FLII) interacting protein 1
known_NIR_1132	chr1	91124631	91150828	+	91124631	91134119	3pMXE	ENSMUST00000165855.8	known	1.00	10	0	10	0	n	1.00	13	0	13	0	n	1.00	18	0	18	0	n	1.00	13	0	13	0	n	0.91	20	2	20	2	y	1.00	13	0	13	0	n	1.00	35	0	35	0	n	1.00	16	0	16	0	n	0.86	6	1	6	1	n	1.00	7	0	7	0	n	1.00	16	0	16	0	n	1.00	8	0	8	0	n	ENSMUSG00000034353.15	Ramp1	chr1	protein_coding	receptor (calcitonin) activity modifying protein 1
known_NIR_1133	chr1	91178159	91181937	+	91178159	91181482	A3SS&ES	ENSMUST00000059743.12	known	0.64	9	5	9	5	y	0.77	17	5	17	5	y	0.52	12	11	12	11	y	0.85	11	2	11	2	y	0.70	14	6	14	6	y	0.73	11	4	11	4	y	0.44	11	14	11	14	y	0.81	17	4	17	4	y	0.75	9	3	9	3	y	0.47	9	10	9	10	y	0.78	18	5	18	5	y	0.75	18	6	18	6	y	ENSMUSG00000034343.15	Ube2f	chr1	protein_coding	ubiquitin-conjugating enzyme E2F (putative)
known_NIR_1134	chr1	91178159	91181982	+	91178159	91181937	A3SS	ENSMUST00000188576.2	known	0.88	66	9	66	9	y	0.76	55	17	55	17	y	0.87	78	12	78	12	y	0.85	63	11	63	11	y	0.85	78	14	78	14	y	0.74	32	11	32	11	y	0.87	72	11	72	11	y	0.65	32	17	32	17	y	0.82	40	9	40	9	y	0.88	68	9	68	9	y	0.78	63	18	63	18	y	0.72	47	18	47	18	y	ENSMUSG00000034343.15	Ube2f	chr1	protein_coding	ubiquitin-conjugating enzyme E2F (putative)
known_NIR_1135	chr1	91178159	91181982	+	91178159;91181549	91181482;91181982	ES	ENSMUST00000059743.12	known	0.92	66	5.5	66	5;6	y	0.86	55	9.0	55	5;13	y	0.88	78	11.0	78	11;11	y	0.93	63	4.5	63	2;7	y	0.90	78	9.0	78	6;12	y	0.88	32	4.5	32	4;5	y	0.85	72	13.0	72	14;12	y	0.88	32	4.5	32	4;5	y	0.85	40	7.0	40	3;11	y	0.88	68	9.5	68	10;9	y	0.93	63	4.5	63	5;4	y	0.83	47	9.5	47	6;13	y	ENSMUSG00000034343.15	Ube2f	chr1	protein_coding	ubiquitin-conjugating enzyme E2F (putative)
known_NIR_1136	chr1	91178159	91181985	+	91178159	91181482	A3SS&ES	ENSMUST00000059743.12	known	0.80	20	5	20	5	y	0.75	15	5	15	5	y	0.66	21	11	21	11	y	0.93	27	2	27	2	y	0.74	17	6	17	6	y	0.75	12	4	12	4	y	0.64	25	14	25	14	y	0.83	19	4	19	4	y	0.57	4	3	4	3	n	0.55	12	10	12	10	y	0.79	19	5	19	5	y	0.78	21	6	21	6	y	ENSMUSG00000034343.15	Ube2f	chr1	protein_coding	ubiquitin-conjugating enzyme E2F (putative)
known_NIR_1137	chr1	91178159	91181985	+	91178159	91181937	A3SS	ENSMUST00000188576.2	known	0.69	20	9	20	9	y	0.47	15	17	15	17	y	0.64	21	12	21	12	y	0.71	27	11	27	11	y	0.55	17	14	17	14	y	0.52	12	11	12	11	y	0.69	25	11	25	11	y	0.53	19	17	19	17	y	0.31	4	9	4	9	y	0.57	12	9	12	9	y	0.51	19	18	19	18	y	0.54	21	18	21	18	y	ENSMUSG00000034343.15	Ube2f	chr1	protein_coding	ubiquitin-conjugating enzyme E2F (putative)
known_NIR_1138	chr1	91178159	91181985	+	91178159	91181982	A3SS	ENSMUST00000178627.8	known	0.23	20	66	20	66	y	0.21	15	55	15	55	y	0.21	21	78	21	78	y	0.30	27	63	27	63	y	0.18	17	78	17	78	y	0.27	12	32	12	32	y	0.26	25	72	25	72	y	0.37	19	32	19	32	y	0.09	4	40	4	40	y	0.15	12	68	12	68	y	0.23	19	63	19	63	y	0.31	21	47	21	47	y	ENSMUSG00000034343.15	Ube2f	chr1	protein_coding	ubiquitin-conjugating enzyme E2F (putative)
known_NIR_1139	chr1	91178159;91181549	91181482;91181937	+	91178159	91181937	cassetteExon	ENSMUST00000188576.2	known	0.22	2.5	9	5;0	9	n	0.13	2.5	17	5;0	17	n	0.35	6.5	12	11;2	12	y	0.12	1.5	11	2;1	11	n	0.18	3.0	14	6;0	14	n	0.15	2.0	11	4;0	11	n	0.39	7.0	11	14;0	11	n	0.11	2.0	17	4;0	17	n	0.14	1.5	9	3;0	9	n	0.40	6.0	9	10;2	9	y	0.14	3.0	18	5;1	18	n	0.14	3.0	18	6;0	18	n	ENSMUSG00000034343.15	Ube2f	chr1	protein_coding	ubiquitin-conjugating enzyme E2F (putative)
known_NIR_1140	chr1	91178575	91181982	+	91178159	91181982	A5SS	ENSMUST00000178627.8	known	0.06	4	66	4	66	y	0.04	2	55	2	55	y	0.00	0	78	0	78	n	0.05	3	63	3	63	y	0.04	3	78	3	78	y	0.00	0	32	0	32	n	0.04	3	72	3	72	y	0.00	0	32	0	32	n	0.02	1	40	1	40	n	0.09	7	68	7	68	y	0.02	1	63	1	63	n	0.06	3	47	3	47	y	ENSMUSG00000034343.15	Ube2f	chr1	protein_coding	ubiquitin-conjugating enzyme E2F (putative)
known_NIR_1141	chr1	91178575	91181982	+	91181549	91181982	A5SS&ES	ENSMUST00000059743.12	known	0.40	4	6	4	6	y	0.13	2	13	2	13	y	0.00	0	11	0	11	n	0.30	3	7	3	7	y	0.20	3	12	3	12	y	0.00	0	5	0	5	n	0.20	3	12	3	12	y	0.00	0	5	0	5	n	0.08	1	11	1	11	n	0.44	7	9	7	9	y	0.20	1	4	1	4	n	0.19	3	13	3	13	y	ENSMUSG00000034343.15	Ube2f	chr1	protein_coding	ubiquitin-conjugating enzyme E2F (putative)
known_NIR_1142	chr1	91181549	91181937	+	91181549	91181982	A3SS	ENSMUST00000059743.12	known	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.15	2	11	2	11	y	0.12	1	7	1	7	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.18	2	9	2	9	y	0.20	1	4	1	4	n	0.00	0	13	0	13	n	ENSMUSG00000034343.15	Ube2f	chr1	protein_coding	ubiquitin-conjugating enzyme E2F (putative)
known_NIR_1143	chr1	91226170	91228233	+	91226170	91228250	A3SS	ENSMUST00000027532.13	known	0.00	0	114	0	114	n	0.00	0	97	0	97	n	0.00	0	109	0	109	n	0.02	3	123	3	123	y	0.01	2	154	2	154	y	0.01	1	87	1	87	n	0.01	1	115	1	115	n	0.00	0	107	0	107	n	0.01	1	114	1	114	n	0.00	0	124	0	124	n	0.00	0	124	0	124	n	0.00	0	141	0	141	n	ENSMUSG00000026307.13	Scly	chr1	protein_coding	selenocysteine lyase
known_NIR_1144	chr1	91226170;91227191	91227126;91228250	+	91226170	91228250	cassetteExon	ENSMUST00000027532.13	known	0.09	11.0	114	6;16	114	y	0.08	8.0	97	5;11	97	y	0.06	7.0	109	3;11	109	y	0.06	8.0	123	2;14	123	y	0.07	11.0	154	7;15	154	y	0.05	5.0	87	4;6	87	y	0.12	15.5	115	14;17	115	y	0.10	11.5	107	6;17	107	y	0.04	5.0	114	0;10	114	n	0.12	17.0	124	14;20	124	y	0.07	10.0	124	9;11	124	y	0.09	14.0	141	5;23	141	y	ENSMUSG00000026307.13	Scly	chr1	protein_coding	selenocysteine lyase
known_NIR_1145	chr1	91226222	91228250	+	91226170	91228250	A5SS	ENSMUST00000027532.13	known	0.08	10	114	10	114	y	0.06	6	97	6	97	y	0.07	8	109	8	109	y	0.10	13	123	13	123	y	0.06	10	154	10	154	y	0.09	9	87	9	87	y	0.08	10	115	10	115	y	0.08	9	107	9	107	y	0.07	8	114	8	114	y	0.07	9	124	9	124	y	0.06	8	124	8	124	y	0.09	14	141	14	141	y	ENSMUSG00000026307.13	Scly	chr1	protein_coding	selenocysteine lyase
known_NIR_1146	chr1	91226222	91228250	+	91227191	91228250	A5SS&ES	ENSMUST00000142488.8	known	0.38	10	16	10	16	y	0.35	6	11	6	11	y	0.42	8	11	8	11	y	0.48	13	14	13	14	y	0.40	10	15	10	15	y	0.60	9	6	9	6	y	0.37	10	17	10	17	y	0.35	9	17	9	17	y	0.44	8	10	8	10	y	0.31	9	20	9	20	y	0.42	8	11	8	11	y	0.38	14	23	14	23	y	ENSMUSG00000026307.13	Scly	chr1	protein_coding	selenocysteine lyase
known_NIR_1147	chr1	91227743	91228250	+	91226170	91228250	A5SS	ENSMUST00000027532.13	known	0.00	0	114	0	114	n	0.00	0	97	0	97	n	0.01	1	109	1	109	n	0.00	0	123	0	123	n	0.00	0	154	0	154	n	0.00	0	87	0	87	n	0.00	0	115	0	115	n	0.00	0	107	0	107	n	0.00	0	114	0	114	n	0.00	0	124	0	124	n	0.02	2	124	2	124	y	0.00	0	141	0	141	n	ENSMUSG00000026307.13	Scly	chr1	protein_coding	selenocysteine lyase
known_NIR_1148	chr1	91227743	91228250	+	91226222	91228250	A5SS	ENSMUST00000142802.2	known	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.11	1	8	1	8	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.20	2	8	2	8	y	0.00	0	14	0	14	n	ENSMUSG00000026307.13	Scly	chr1	protein_coding	selenocysteine lyase
known_NIR_1149	chr1	91227743	91228250	+	91227191	91228250	A5SS	ENSMUST00000142488.8	known	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.08	1	11	1	11	n	0.00	0	14	0	14	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	17	0	17	n	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.00	0	20	0	20	n	0.15	2	11	2	11	y	0.00	0	23	0	23	n	ENSMUSG00000026307.13	Scly	chr1	protein_coding	selenocysteine lyase
known_NIR_1150	chr1	91228362	91230495	+	91228362	91230491	A3SS	ENSMUST00000027532.13	known	0.02	5	205	5	205	y	0.08	14	161	14	161	y	0.05	10	190	10	190	y	0.04	8	208	8	208	y	0.04	12	259	12	259	y	0.03	5	145	5	145	y	0.04	9	202	9	202	y	0.04	6	155	6	155	y	0.04	7	185	7	185	y	0.00	1	259	1	259	n	0.05	8	162	8	162	y	0.06	13	192	13	192	y	ENSMUSG00000026307.13	Scly	chr1	protein_coding	selenocysteine lyase
known_NIR_1151	chr1	91301738	91304040	-	91303260	91304040	A3SS	ENSMUST00000187049.7	known	0.50	2	2	2	2	n	0.33	1	2	1	2	n	0.67	8	4	8	4	y	0.60	3	2	3	2	n	0.40	2	3	2	3	n	1.00	4	0	4	0	n	0.86	6	1	6	1	n	0.50	4	4	4	4	n	0.50	3	3	3	3	n	0.43	3	4	3	4	n	0.75	3	1	3	1	n	0.50	4	4	4	4	n	ENSMUSG00000026309.15	Ilkap	chr1	protein_coding	integrin-linked kinase-associated serine/threonine phosphatase 2C
known_NIR_1152	chr1	91303804	91304040	-	91301738	91304040	A3SS	ENSMUST00000190747.7	known	0.98	105	2	105	2	y	0.99	156	1	156	1	n	0.94	122	8	122	8	y	0.98	123	3	123	3	y	0.98	131	2	131	2	y	0.95	72	4	72	4	y	0.96	163	6	163	6	y	0.93	54	4	54	4	y	0.97	84	3	84	3	y	0.98	128	3	128	3	y	0.98	140	3	140	3	y	0.97	129	4	129	4	y	ENSMUSG00000026309.15	Ilkap	chr1	protein_coding	integrin-linked kinase-associated serine/threonine phosphatase 2C
known_NIR_1153	chr1	91303804	91304040	-	91303260	91304040	A3SS	ENSMUST00000187049.7	known	0.98	105	2	105	2	y	0.99	156	2	156	2	y	0.97	122	4	122	4	y	0.98	123	2	123	2	y	0.98	131	3	131	3	y	1.00	72	0	72	0	n	0.99	163	1	163	1	n	0.93	54	4	54	4	y	0.97	84	3	84	3	y	0.97	128	4	128	4	y	0.99	140	1	140	1	n	0.97	129	4	129	4	y	ENSMUSG00000026309.15	Ilkap	chr1	protein_coding	integrin-linked kinase-associated serine/threonine phosphatase 2C
known_NIR_1154	chr1	91315063	91316067	-	91315063	91316077	A5SS	ENSMUST00000187049.7	known	0.92	89	8	89	8	y	0.92	84	7	84	7	y	0.89	98	12	98	12	y	0.87	69	10	69	10	y	0.86	98	16	98	16	y	0.87	33	5	33	5	y	0.89	101	12	101	12	y	0.83	43	9	43	9	y	0.90	63	7	63	7	y	0.91	104	10	104	10	y	0.86	84	14	84	14	y	0.91	106	10	106	10	y	ENSMUSG00000026309.15	Ilkap	chr1	protein_coding	integrin-linked kinase-associated serine/threonine phosphatase 2C
known_NIR_1155	chr1	91316186	91318329	-	91316168	91318329	A3SS	ENSMUST00000187049.7	known	0.84	70	13	70	13	y	0.81	81	19	81	19	y	0.83	86	18	86	18	y	0.79	60	16	60	16	y	0.80	70	18	70	18	y	0.90	38	4	38	4	y	0.86	105	17	105	17	y	0.82	41	9	41	9	y	0.88	56	8	56	8	y	0.75	72	24	72	24	y	0.81	79	18	79	18	y	0.86	63	10	63	10	y	ENSMUSG00000026309.15	Ilkap	chr1	protein_coding	integrin-linked kinase-associated serine/threonine phosphatase 2C
known_NIR_1156	chr1	91375466	91376430	-	91373344	91376430	A3SS	ENSMUST00000069620.10	known	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	21	0	21	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.14	1	6	1	6	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.20	2	8	2	8	y	0.00	0	14	0	14	n	ENSMUSG00000055866.10	Per2	chr1	protein_coding	period circadian clock 2
known_NIR_1157	chr1	91429146;91433216	91433145;91435215	+	91429146	91435215	cassetteExon	ENSMUST00000189341.7	known	0.94	15.5	1	14;17	1	n	1.00	16.5	0	17;16	0	n	0.88	28.0	4	35;21	4	y	0.95	18.5	1	17;20	1	n	0.94	17.0	1	15;19	1	n	1.00	9.5	0	13;6	0	n	0.95	21.0	1	26;16	1	n	0.93	14.0	1	15;13	1	n	1.00	15.5	0	22;9	0	n	1.00	19.0	0	21;17	0	n	0.95	19.0	1	21;17	1	n	1.00	14.5	0	11;18	0	n	ENSMUSG00000034292.14	Traf3ip1	chr1	protein_coding	TRAF3 interacting protein 1
known_NIR_1158	chr1	91468586	91471873	+	91468586	91471878	A3SS	ENSMUST00000086843.11	known	0.33	2	4	2	4	n	0.00	0	3	0	3	n	0.29	2	5	2	5	n	0.20	1	4	1	4	n	0.50	2	2	2	2	n	0.50	1	1	1	1	n	0.25	3	9	3	9	y	0.75	3	1	3	1	n	0.43	3	4	3	4	n	0.32	6	13	6	13	y	0.60	3	2	3	2	n	0.00	0	3	0	3	n	ENSMUSG00000026311.17	Asb1	chr1	protein_coding	ankyrin repeat and SOCS box-containing 1
known_NIR_1159	chr1	91892548	91896060	-	91892548	91896075	A5SS	ENSMUST00000097644.9	known	0.33	1	2	1	2	n	0.50	1	1	1	1	n	0.47	8	9	8	9	y	0.38	3	5	3	5	n	0.40	6	9	6	9	y	0.33	1	2	1	2	n	0.90	9	1	9	1	n	0.43	3	4	3	4	n	0.60	3	2	3	2	n	0.25	1	3	1	3	n	1.00	5	0	5	0	n	0.64	7	4	7	4	y	ENSMUSG00000026313.17	Hdac4	chr1	protein_coding	histone deacetylase 4
known_NIR_1160	chr1	92390067	92390672	-	92390067	92390800	A5SS	ENSMUST00000027478.7	known	0.00	1	442	1	442	n	0.00	2	452	2	452	y	0.00	0	372	0	372	n	0.00	1	429	1	429	n	0.00	0	486	0	486	n	0.00	0	259	0	259	n	0.00	0	611	0	611	n	0.00	0	258	0	258	n	0.00	0	484	0	484	n	0.00	1	711	1	711	n	0.00	0	581	0	581	n	0.00	0	617	0	617	n	ENSMUSG00000026260.13	Ndufa10	chr1	protein_coding	NADH:ubiquinone oxidoreductase subunit A10
known_NIR_1161	chr1	92567481	92569602	-	92567481	92569329	A5SS	ENSMUST00000148508.2	known	0.99	292	3	292	3	y	0.99	300	4	300	4	y	0.99	297	2	297	2	y	0.99	253	3	253	3	y	0.99	348	5	348	5	y	0.99	150	2	150	2	y	0.99	363	5	363	5	y	1.00	176	0	176	0	n	0.99	268	4	268	4	y	0.99	400	4	400	4	y	0.99	350	3	350	3	y	1.00	356	1	356	1	n	ENSMUSG00000073616.11	Cops9	chr1	protein_coding	COP9 signalosome subunit 9
known_NIR_1162	chr1	92842921	92843546	+	92842921	92843536	A3SS	ENSMUST00000027487.15	known	0.00	0	85	0	85	n	0.00	0	77	0	77	n	0.05	3	58	3	58	y	0.05	6	109	6	109	y	0.00	0	136	0	136	n	0.00	0	44	0	44	n	0.00	0	121	0	121	n	0.00	0	75	0	75	n	0.00	0	55	0	55	n	0.00	0	148	0	148	n	0.00	0	107	0	107	n	0.00	0	109	0	109	n	ENSMUSG00000026269.15	Rnpepl1	chr1	protein_coding	arginyl aminopeptidase (aminopeptidase B)-like 1
known_NIR_1163	chr1	92845848	92846628	+	92845848	92846595	A3SS	ENSMUST00000027487.15	known	0.07	9	126	9	126	y	0.07	8	112	8	112	y	0.00	0	89	0	89	n	0.03	4	143	4	143	y	0.00	0	160	0	160	n	0.04	2	48	2	48	y	0.04	6	143	6	143	y	0.06	5	83	5	83	y	0.02	2	107	2	107	y	0.02	3	144	3	144	y	0.00	0	132	0	132	n	0.05	9	156	9	156	y	ENSMUSG00000026269.15	Rnpepl1	chr1	protein_coding	arginyl aminopeptidase (aminopeptidase B)-like 1
known_NIR_1164	chr1	92845848	92846628	+	92845848	92846660	A3SS	ENSMUST00000178816.8	known	1.00	9	0	9	0	n	1.00	8	0	8	0	n	-	-	-	-	-	-	1.00	4	0	4	0	n	0.00	0	8	0	8	n	1.00	2	0	2	0	n	1.00	6	0	6	0	n	1.00	5	0	5	0	n	0.25	2	6	2	6	n	0.30	3	7	3	7	y	0.00	0	7	0	7	n	0.41	9	13	9	13	y	ENSMUSG00000026269.15	Rnpepl1	chr1	protein_coding	arginyl aminopeptidase (aminopeptidase B)-like 1
known_NIR_1165	chr1	92845848	92846660	+	92845848	92846595	A3SS	ENSMUST00000027487.15	known	0.00	0	126	0	126	n	0.00	0	112	0	112	n	0.00	0	89	0	89	n	0.00	0	143	0	143	n	0.05	8	160	8	160	y	0.00	0	48	0	48	n	0.00	0	143	0	143	n	0.00	0	83	0	83	n	0.05	6	107	6	107	y	0.05	7	144	7	144	y	0.05	7	132	7	132	y	0.08	13	156	13	156	y	ENSMUSG00000026269.15	Rnpepl1	chr1	protein_coding	arginyl aminopeptidase (aminopeptidase B)-like 1
known_NIR_1166	chr1	93069131	93069769	+	93069131	93069790	A3SS	ENSMUST00000027491.7	known	0.00	0	1027	0	1027	n	0.00	2	1098	2	1098	y	0.00	0	229	0	229	n	0.00	0	954	0	954	n	0.00	0	1105	0	1105	n	0.00	1	226	1	226	n	0.00	0	996	0	996	n	0.00	1	331	1	331	n	0.00	0	1024	0	1024	n	0.00	0	1358	0	1358	n	0.00	1	1131	1	1131	n	0.00	0	1852	0	1852	n	ENSMUSG00000026272.7	Agxt	chr1	protein_coding	alanine-glyoxylate aminotransferase
known_NIR_1167	chr1	93209072	93209330	+	93209072	93209374	A3SS	ENSMUST00000062202.14	known	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.50	5	5	5	5	y	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.40	2	3	2	3	n	0.25	1	3	1	3	n	ENSMUSG00000047793.14	Sned1	chr1	protein_coding	sushi, nidogen and EGF-like domains 1
known_NIR_1168	chr1	93229517	93230440	-	93229306	93230440	A3SS	ENSMUST00000112944.8	known	0.95	59	3	59	3	y	0.89	58	7	58	7	y	0.98	53	1	53	1	n	0.91	70	7	70	7	y	0.93	70	5	70	5	y	0.79	23	6	23	6	y	0.87	66	10	66	10	y	0.94	32	2	32	2	y	0.91	62	6	62	6	y	0.94	78	5	78	5	y	0.90	69	8	69	8	y	0.92	70	6	70	6	y	ENSMUSG00000026273.14	Mterf4	chr1	protein_coding	mitochondrial transcription termination factor 4
known_NIR_1169	chr1	93271433	93278047	+	93271433;93274009	93273878;93278047	ES	ENSMUST00000027494.11	known	0.00	0	50.5	0	52;49	n	0.00	0	32.0	0	29;35	n	0.07	3	43.0	3	29;57	y	0.00	0	47.0	0	36;58	n	0.02	1	52.5	1	49;56	n	0.00	0	36.0	0	31;41	n	0.00	0	49.5	0	34;65	n	0.06	2	29.0	2	28;30	y	0.05	2	37.5	2	32;43	y	0.01	1	68.5	1	53;84	n	0.00	0	49.0	0	31;67	n	0.02	1	58.0	1	54;62	n	ENSMUSG00000026275.14	Ppp1r7	chr1	protein_coding	protein phosphatase 1, regulatory subunit 7
known_NIR_1170	chr1	93278736	93279048	+	93278736	93279228	A3SS	ENSMUST00000027494.11	known	0.00	0	96	0	96	n	0.02	1	60	1	60	n	0.03	2	59	2	59	y	0.03	3	92	3	92	y	0.04	4	92	4	92	y	0.00	0	39	0	39	n	0.00	0	70	0	70	n	0.00	0	51	0	51	n	0.00	0	56	0	56	n	0.02	2	101	2	101	y	0.00	0	75	0	75	n	0.01	1	81	1	81	n	ENSMUSG00000026275.14	Ppp1r7	chr1	protein_coding	protein phosphatase 1, regulatory subunit 7
known_NIR_1171	chr1	93369972	93373011	-	93369972	93373302	A5SS	ENSMUST00000042498.14	known	0.01	1	158	1	158	n	0.01	1	115	1	115	n	0.01	4	490	4	490	y	0.00	0	264	0	264	n	0.00	1	439	1	439	n	0.01	3	260	3	260	y	0.00	1	249	1	249	n	0.01	2	360	2	360	y	0.00	0	163	0	163	n	0.00	1	288	1	288	n	0.00	0	165	0	165	n	0.00	0	283	0	283	n	ENSMUSG00000034088.16	Hdlbp	chr1	protein_coding	high density lipoprotein (HDL) binding protein
known_NIR_1172	chr1	93369972	93373011	-	93369972	93406435	A5SS	ENSMUST00000170883.8	known	0.03	1	32	1	32	n	0.05	1	20	1	20	n	0.11	4	31	4	31	y	0.00	0	52	0	52	n	0.01	1	68	1	68	n	0.12	3	23	3	23	y	0.02	1	50	1	50	n	0.07	2	25	2	25	y	0.00	0	22	0	22	n	0.03	1	31	1	31	n	0.00	0	45	0	45	n	0.00	0	62	0	62	n	ENSMUSG00000034088.16	Hdlbp	chr1	protein_coding	high density lipoprotein (HDL) binding protein
known_NIR_1173	chr1	93369972	93373302	-	93369972	93406435	A5SS	ENSMUST00000170883.8	known	0.83	158	32	158	32	y	0.85	115	20	115	20	y	0.94	490	31	490	31	y	0.84	264	52	264	52	y	0.87	439	68	439	68	y	0.92	260	23	260	23	y	0.83	249	50	249	50	y	0.94	360	25	360	25	y	0.88	163	22	163	22	y	0.90	288	31	288	31	y	0.79	165	45	165	45	y	0.82	283	62	283	62	y	ENSMUSG00000034088.16	Hdlbp	chr1	protein_coding	high density lipoprotein (HDL) binding protein
known_NIR_1174	chr1	93369972	93389066	-	93369972	93373302	5pMXE	ENSMUST00000042498.14	known	0.01	1	158	1	158	n	0.00	0	115	0	115	n	0.00	2	490	2	490	y	0.02	5	264	5	264	y	0.00	0	439	0	439	n	0.00	0	260	0	260	n	0.01	2	249	2	249	y	0.00	1	360	1	360	n	0.00	0	163	0	163	n	0.01	2	288	2	288	y	0.00	0	165	0	165	n	0.01	3	283	3	283	y	ENSMUSG00000034088.16	Hdlbp	chr1	protein_coding	high density lipoprotein (HDL) binding protein
known_NIR_1175	chr1	93369972	93405929	-	93369972	93373011	5pMXE	ENSMUST00000186787.7	known	0.88	7	1	7	1	n	0.75	3	1	3	1	n	0.71	10	4	10	4	y	1.00	13	0	13	0	n	0.94	16	1	16	1	n	0.79	11	3	11	3	y	0.90	9	1	9	1	n	0.50	2	2	2	2	n	1.00	8	0	8	0	n	0.91	10	1	10	1	n	1.00	8	0	8	0	n	1.00	12	0	12	0	n	ENSMUSG00000034088.16	Hdlbp	chr1	protein_coding	high density lipoprotein (HDL) binding protein
known_NIR_1176	chr1	93369972	93405929	-	93369972	93373302	5pMXE	ENSMUST00000042498.14	known	0.04	7	158	7	158	y	0.03	3	115	3	115	y	0.02	10	490	10	490	y	0.05	13	264	13	264	y	0.04	16	439	16	439	y	0.04	11	260	11	260	y	0.03	9	249	9	249	y	0.01	2	360	2	360	y	0.05	8	163	8	163	y	0.03	10	288	10	288	y	0.05	8	165	8	165	y	0.04	12	283	12	283	y	ENSMUSG00000034088.16	Hdlbp	chr1	protein_coding	high density lipoprotein (HDL) binding protein
known_NIR_1177	chr1	93369972	93405929	-	93369972	93389066	A5SS&ES	ENSMUST00000189025.7	known	0.88	7	1	7	1	n	1.00	3	0	3	0	n	0.83	10	2	10	2	y	0.72	13	5	13	5	y	1.00	16	0	16	0	n	1.00	11	0	11	0	n	0.82	9	2	9	2	y	0.67	2	1	2	1	n	1.00	8	0	8	0	n	0.83	10	2	10	2	y	1.00	8	0	8	0	n	0.80	12	3	12	3	y	ENSMUSG00000034088.16	Hdlbp	chr1	protein_coding	high density lipoprotein (HDL) binding protein
known_NIR_1178	chr1	93369972	93405929	-	93369972	93406435	A5SS	ENSMUST00000170883.8	known	0.18	7	32	7	32	y	0.13	3	20	3	20	y	0.24	10	31	10	31	y	0.20	13	52	13	52	y	0.19	16	68	16	68	y	0.32	11	23	11	23	y	0.15	9	50	9	50	y	0.07	2	25	2	25	y	0.27	8	22	8	22	y	0.24	10	31	10	31	y	0.15	8	45	8	45	y	0.16	12	62	12	62	y	ENSMUSG00000034088.16	Hdlbp	chr1	protein_coding	high density lipoprotein (HDL) binding protein
known_NIR_1179	chr1	93406790	93416846	+	93407288	93416846	5pMXE	ENSMUST00000150931.2	known	1.00	26	0	26	0	n	1.00	26	0	26	0	n	0.97	56	2	56	2	y	0.98	54	1	54	1	n	1.00	50	0	50	0	n	1.00	21	0	21	0	n	1.00	33	0	33	0	n	0.96	27	1	27	1	n	1.00	26	0	26	0	n	1.00	45	0	45	0	n	1.00	30	0	30	0	n	0.95	38	2	38	2	y	ENSMUSG00000026276.21	Septin2	chr1	protein_coding	septin 2
known_NIR_1180	chr1	93406790	93416850	+	93406790	93416846	A3SS	ENSMUST00000027495.15	known	0.00	0	26	0	26	n	0.00	0	26	0	26	n	0.07	4	56	4	56	y	0.02	1	54	1	54	n	0.00	0	50	0	50	n	0.00	0	21	0	21	n	0.00	0	33	0	33	n	0.00	0	27	0	27	n	0.10	3	26	3	26	y	0.08	4	45	4	45	y	0.06	2	30	2	30	y	0.03	1	38	1	38	n	ENSMUSG00000026276.21	Septin2	chr1	protein_coding	septin 2
known_NIR_1181	chr1	93406902	93416846	+	93406790	93416846	A5SS	ENSMUST00000027495.15	known	0.45	21	26	21	26	y	0.24	8	26	8	26	y	0.38	35	56	35	56	y	0.34	28	54	28	54	y	0.38	30	50	30	50	y	0.43	16	21	16	21	y	0.34	17	33	17	33	y	0.40	18	27	18	27	y	0.33	13	26	13	26	y	0.40	30	45	30	45	y	0.17	6	30	6	30	y	0.27	14	38	14	38	y	ENSMUSG00000026276.21	Septin2	chr1	protein_coding	septin 2
known_NIR_1182	chr1	93406902	93416846	+	93407321	93416846	A5SS&ES	ENSMUST00000153826.8	known	1.00	21	0	21	0	n	1.00	8	0	8	0	n	1.00	35	0	35	0	n	1.00	28	0	28	0	n	1.00	30	0	30	0	n	1.00	16	0	16	0	n	1.00	17	0	17	0	n	1.00	18	0	18	0	n	1.00	13	0	13	0	n	1.00	30	0	30	0	n	1.00	6	0	6	0	n	0.88	14	2	14	2	y	ENSMUSG00000026276.21	Septin2	chr1	protein_coding	septin 2
known_NIR_1183	chr1	93406902	93416850	+	93406902	93416846	A3SS	ENSMUST00000129211.8	known	0.09	2	21	2	21	y	0.00	0	8	0	8	n	0.03	1	35	1	35	n	0.12	4	28	4	28	y	0.06	2	30	2	30	y	0.11	2	16	2	16	y	0.00	0	17	0	17	n	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.06	2	30	2	30	y	0.00	0	6	0	6	n	0.12	2	14	2	14	y	ENSMUSG00000026276.21	Septin2	chr1	protein_coding	septin 2
known_NIR_1184	chr1	93407036	93416846	+	93406790	93416846	A5SS	ENSMUST00000027495.15	known	0.13	4	26	4	26	y	0.10	3	26	3	26	y	0.07	4	56	4	56	y	0.10	6	54	6	54	y	0.17	10	50	10	50	y	0.09	2	21	2	21	y	0.06	2	33	2	33	y	0.23	8	27	8	27	y	0.07	2	26	2	26	y	0.21	12	45	12	45	y	0.19	7	30	7	30	y	0.14	6	38	6	38	y	ENSMUSG00000026276.21	Septin2	chr1	protein_coding	septin 2
known_NIR_1185	chr1	93407036	93416846	+	93406902	93416846	A5SS	ENSMUST00000129211.8	known	0.16	4	21	4	21	y	0.27	3	8	3	8	y	0.10	4	35	4	35	y	0.18	6	28	6	28	y	0.25	10	30	10	30	y	0.11	2	16	2	16	y	0.11	2	17	2	17	y	0.31	8	18	8	18	y	0.13	2	13	2	13	y	0.29	12	30	12	30	y	0.54	7	6	7	6	y	0.30	6	14	6	14	y	ENSMUSG00000026276.21	Septin2	chr1	protein_coding	septin 2
known_NIR_1186	chr1	93407036	93416850	+	93407036	93416846	A3SS	ENSMUST00000149532.8	known	0.43	3	4	3	4	n	0.00	0	3	0	3	n	0.56	5	4	5	4	n	0.14	1	6	1	6	n	0.23	3	10	3	10	y	0.60	3	2	3	2	n	0.60	3	2	3	2	n	0.33	4	8	4	8	y	0.00	0	2	0	2	n	0.25	4	12	4	12	y	0.00	0	7	0	7	n	0.50	6	6	6	6	y	ENSMUSG00000026276.21	Septin2	chr1	protein_coding	septin 2
known_NIR_1187	chr1	93407288	93416846	+	93406902	93416846	A5SS	ENSMUST00000129211.8	known	0.00	0	21	0	21	n	0.00	0	8	0	8	n	0.05	2	35	2	35	y	0.03	1	28	1	28	n	0.00	0	30	0	30	n	0.00	0	16	0	16	n	0.00	0	17	0	17	n	0.05	1	18	1	18	n	0.00	0	13	0	13	n	0.00	0	30	0	30	n	0.00	0	6	0	6	n	0.12	2	14	2	14	y	ENSMUSG00000026276.21	Septin2	chr1	protein_coding	septin 2
known_NIR_1188	chr1	93552346	93553183	-	93552346	93552756	5pMXE	ENSMUST00000154008.8	known	0.00	0	145	0	145	n	0.01	2	137	2	137	y	0.02	3	161	3	161	y	0.01	1	106	1	106	n	0.00	0	175	0	175	n	0.00	0	96	0	96	n	0.02	3	141	3	141	y	0.03	2	73	2	73	y	0.01	1	86	1	86	n	0.02	2	130	2	130	y	0.02	2	112	2	112	y	0.01	2	136	2	136	y	ENSMUSG00000026277.15	Stk25	chr1	protein_coding	serine/threonine kinase 25 (yeast)
known_NIR_1189	chr1	93552346	93553183	-	93552346;93552870	93552756;93553183	ES	ENSMUST00000027498.14	known	0.00	0	142.0	0	145;139	n	0.01	2	136.5	2	137;136	y	0.02	3	163.0	3	161;165	y	0.01	1	117.0	1	106;128	n	0.00	0	169.0	0	175;163	n	0.00	0	89.5	0	96;83	n	0.02	3	141.5	3	141;142	y	0.02	2	78.5	2	73;84	y	0.01	1	97.0	1	86;108	n	0.01	2	149.0	2	130;168	y	0.02	2	126.0	2	112;140	y	0.01	2	155.0	2	136;174	y	ENSMUSG00000026277.15	Stk25	chr1	protein_coding	serine/threonine kinase 25 (yeast)
known_NIR_1190	chr1	93621690	93621782	+	93617007	93621782	A5SS	ENSMUST00000027499.13	known	0.12	1	7	1	7	n	0.27	3	8	3	8	y	0.17	4	19	4	19	y	0.35	6	11	6	11	y	0.50	22	22	22	22	y	0.64	18	10	18	10	y	0.46	18	21	18	21	y	0.46	17	20	17	20	y	0.47	7	8	7	8	y	0.29	8	20	8	20	y	0.12	2	14	2	14	y	0.40	10	15	10	15	y	ENSMUSG00000026278.15	Bok	chr1	protein_coding	BCL2-related ovarian killer
known_NIR_1191	chr1	93653038	93659579	-	93653038	93677569	A5SS	ENSMUST00000190116.7	known	0.00	0	28	0	28	n	0.06	2	30	2	30	y	0.00	0	25	0	25	n	0.00	0	36	0	36	n	0.03	1	37	1	37	n	0.00	0	35	0	35	n	0.06	2	30	2	30	y	0.00	0	15	0	15	n	0.00	0	26	0	26	n	0.00	0	37	0	37	n	0.00	0	28	0	28	n	0.03	1	32	1	32	n	ENSMUSG00000026279.15	Thap4	chr1	protein_coding	THAP domain containing 4
known_NIR_1192	chr1	93683178	93695775	+	93682776	93695775	A5SS	ENSMUST00000027502.16	known	0.00	0	20	0	20	n	0.00	0	19	0	19	n	0.04	2	51	2	51	y	0.02	1	45	1	45	n	0.03	1	39	1	39	n	0.00	0	25	0	25	n	0.05	2	36	2	36	y	0.04	1	26	1	26	n	0.00	0	27	0	27	n	0.08	3	36	3	36	y	0.00	0	34	0	34	n	0.06	2	33	2	33	y	ENSMUSG00000026280.18	Atg4b	chr1	protein_coding	autophagy related 4B, cysteine peptidase
known_NIR_1193	chr1	93702956	93706007	+	93702956	93703350	3pMXE	ENSMUST00000149436.8	known	0.01	1	66	1	66	n	0.02	1	58	1	58	n	0.00	0	85	0	85	n	0.00	0	88	0	88	n	0.00	0	106	0	106	n	0.00	0	56	0	56	n	0.00	0	96	0	96	n	0.00	0	75	0	75	n	0.00	0	79	0	79	n	0.00	0	96	0	96	n	0.00	0	90	0	90	n	0.02	2	93	2	93	y	ENSMUSG00000026280.18	Atg4b	chr1	protein_coding	autophagy related 4B, cysteine peptidase
known_NIR_1194	chr1	93702956	93706007	+	93702956;93703422	93703350;93706007	ES	ENSMUST00000027502.16	known	0.02	1	62.0	1	66;58	n	0.02	1	63.5	1	58;69	n	0.00	0	79.5	0	85;74	n	0.00	0	76.0	0	88;64	n	0.00	0	96.5	0	106;87	n	0.00	0	53.0	0	56;50	n	0.00	0	86.5	0	96;77	n	0.00	0	66.0	0	75;57	n	0.00	0	69.5	0	79;60	n	0.00	0	99.5	0	96;103	n	0.00	0	88.0	0	90;86	n	0.02	2	85.0	2	93;77	y	ENSMUSG00000026280.18	Atg4b	chr1	protein_coding	autophagy related 4B, cysteine peptidase
known_NIR_1195	chr1	93713746	93714233	+	93713688	93714233	A5SS	ENSMUST00000027502.16	known	0.00	0	66	0	66	n	0.00	0	60	0	60	n	0.05	4	80	4	80	y	0.00	0	56	0	56	n	0.00	0	92	0	92	n	0.00	0	59	0	59	n	0.00	0	86	0	86	n	0.00	0	51	0	51	n	0.00	0	60	0	60	n	0.00	0	95	0	95	n	0.00	0	71	0	71	n	0.00	0	77	0	77	n	ENSMUSG00000026280.18	Atg4b	chr1	protein_coding	autophagy related 4B, cysteine peptidase
known_NIR_1196	chr1	93726192	93726498	-	93726192	93728524	A5SS	ENSMUST00000027503.14	known	0.07	3	38	3	38	y	0.07	3	40	3	40	y	0.13	5	33	5	33	y	0.20	6	24	6	24	y	0.08	4	46	4	46	y	0.06	2	32	2	32	y	0.08	3	33	3	33	y	0.11	2	16	2	16	y	0.00	0	38	0	38	n	0.11	6	51	6	51	y	0.10	4	36	4	36	y	0.04	2	51	2	51	y	ENSMUSG00000026281.16	Dtymk	chr1	protein_coding	deoxythymidylate kinase
known_NIR_1197	chr1	93753302	93754007	+	93753041	93754007	A5SS	ENSMUST00000097633.10	known	0.42	8	11	8	11	y	0.00	0	3	0	3	n	0.56	10	8	10	8	y	0.32	7	15	7	15	y	0.26	8	23	8	23	y	0.62	10	6	10	6	y	0.38	9	15	9	15	y	0.41	7	10	7	10	y	0.59	10	7	10	7	y	0.38	12	20	12	20	y	0.45	10	12	10	12	y	0.18	3	14	3	14	y	ENSMUSG00000073609.10	D2hgdh	chr1	protein_coding	D-2-hydroxyglutarate dehydrogenase
known_NIR_1198	chr1	93757618	93760318	+	93757618	93765662	A3SS	ENSMUST00000189154.2	known	0.78	14	4	14	4	y	0.91	21	2	21	2	y	1.00	12	0	12	0	n	1.00	37	0	37	0	n	1.00	25	0	25	0	n	1.00	8	0	8	0	n	1.00	45	0	45	0	n	1.00	18	0	18	0	n	1.00	31	0	31	0	n	1.00	45	0	45	0	n	1.00	41	0	41	0	n	1.00	34	0	34	0	n	ENSMUSG00000073609.10	D2hgdh	chr1	protein_coding	D-2-hydroxyglutarate dehydrogenase
known_NIR_1199	chr1	93757618	93763009	+	93757618;93760511	93760318;93763009	ES	ENSMUST00000097633.10	known	0.12	3	23.0	3	14;32	y	0.09	2	19.5	2	21;18	y	0.10	2	19.0	2	12;26	y	0.08	4	45.0	4	37;53	y	0.07	3	37.0	3	25;49	y	0.00	0	18.5	0	8;29	n	0.12	7	51.0	7	45;57	y	0.17	4	19.5	4	18;21	y	0.00	0	34.0	0	31;37	n	0.05	3	55.0	3	45;65	y	0.00	0	51.5	0	41;62	n	0.00	0	44.5	0	34;55	n	ENSMUSG00000073609.10	D2hgdh	chr1	protein_coding	D-2-hydroxyglutarate dehydrogenase
known_NIR_1200	chr1	93757618;93763177	93763009;93765662	+	93757618	93765662	cassetteExon	ENSMUST00000189154.2	known	0.78	14.5	4	3;26	4	y	0.87	13.5	2	2;25	2	y	1.00	14.5	0	2;27	0	n	1.00	34.0	0	4;64	0	n	1.00	30.0	0	3;57	0	n	1.00	10.5	0	0;21	0	n	1.00	24.5	0	7;42	0	n	1.00	13.5	0	4;23	0	n	1.00	17.5	0	0;35	0	n	1.00	30.5	0	3;58	0	n	1.00	21.5	0	0;43	0	n	1.00	29.5	0	0;59	0	n	ENSMUSG00000073609.10	D2hgdh	chr1	protein_coding	D-2-hydroxyglutarate dehydrogenase
known_NIR_1201	chr1	9620169	9620786	+	9620169	9623543	A3SS	ENSMUST00000186467.2	known	0.20	1	4	1	4	n	0.14	1	6	1	6	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.29	2	5	2	5	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.25	1	3	1	3	n	0.00	0	10	0	10	n	0.38	3	5	3	5	n	0.43	3	4	3	4	n	0.31	4	9	4	9	y	ENSMUSG00000025911.15	Adhfe1	chr1	protein_coding	alcohol dehydrogenase, iron containing, 1
known_NIR_1202	chr1	9620169	9621942	+	9620169	9623543	A3SS	ENSMUST00000186467.2	known	0.96	86	4	86	4	y	0.92	70	6	70	6	y	1.00	59	0	59	0	n	0.96	124	5	124	5	y	0.96	110	5	110	5	y	1.00	64	0	64	0	n	1.00	99	0	99	0	n	0.94	48	3	48	3	y	0.91	97	10	97	10	y	0.97	160	5	160	5	y	0.96	95	4	95	4	y	0.94	139	9	139	9	y	ENSMUSG00000025911.15	Adhfe1	chr1	protein_coding	alcohol dehydrogenase, iron containing, 1
known_NIR_1203	chr1	9620169	9623148	+	9620169;9621982	9621942;9623148	ES	ENSMUST00000144177.8	known	0.43	67	88.0	67	86;90	y	0.52	76	69.5	76	70;69	y	0.33	28	58.0	28	59;57	y	0.45	104	129.5	104	124;135	y	0.47	100	114.0	100	110;118	y	0.44	50	64.5	50	64;65	y	0.51	97	94.5	97	99;90	y	0.51	48	47.0	48	48;46	y	0.42	77	108.0	77	97;119	y	0.46	143	166.0	143	160;172	y	0.44	81	101.5	81	95;108	y	0.39	93	143.5	93	139;148	y	ENSMUSG00000025911.15	Adhfe1	chr1	protein_coding	alcohol dehydrogenase, iron containing, 1
known_NIR_1204	chr1	9620169	9623543	+	9620169;9623201	9623148;9623543	ES	ENSMUST00000027044.15	known	0.03	4	122.0	4	67;177	y	0.05	6	126.0	6	76;176	y	0.00	0	57.0	0	28;86	n	0.02	5	198.0	5	104;292	y	0.03	5	181.5	5	100;263	y	0.00	0	76.5	0	50;103	n	0.00	0	172.0	0	97;247	n	0.04	3	80.5	3	48;113	y	0.06	10	160.5	10	77;244	y	0.02	5	255.5	5	143;368	y	0.03	4	153.5	4	81;226	y	0.05	9	177.0	9	93;261	y	ENSMUSG00000025911.15	Adhfe1	chr1	protein_coding	alcohol dehydrogenase, iron containing, 1
known_NIR_1205	chr1	9620169;9620872	9620786;9623148	+	9620169	9623148	cassetteExon	ENSMUST00000027044.15	known	0.01	0.5	67	1;0	67	n	0.01	1.0	76	1;1	76	n	0.00	0.0	28	0;0	28	n	0.00	0.5	104	0;1	104	n	0.01	1.0	100	2;0	100	n	0.00	0.0	50	0;0	50	n	0.01	0.5	97	1;0	97	n	0.01	0.5	48	1;0	48	n	0.01	1.0	77	0;2	77	n	0.02	2.5	143	3;2	143	y	0.02	1.5	81	3;0	81	n	0.02	2.0	93	4;0	93	n	ENSMUSG00000025911.15	Adhfe1	chr1	protein_coding	alcohol dehydrogenase, iron containing, 1
known_NIR_1206	chr1	9620169;9620872	9620786;9623148	+	9620169;9621982	9621942;9623148	MXE	ENSMUST00000144177.8	known	0.01	0.5	88.0	1;0	86;90	n	0.01	1.0	69.5	1;1	70;69	n	0.00	0.0	58.0	0;0	59;57	n	0.00	0.5	129.5	0;1	124;135	n	0.01	1.0	114.0	2;0	110;118	n	0.00	0.0	64.5	0;0	64;65	n	0.01	0.5	94.5	1;0	99;90	n	0.01	0.5	47.0	1;0	48;46	n	0.01	1.0	108.0	0;2	97;119	n	0.01	2.5	166.0	3;2	160;172	y	0.01	1.5	101.5	3;0	95;108	n	0.01	2.0	143.5	4;0	139;148	n	ENSMUSG00000025911.15	Adhfe1	chr1	protein_coding	alcohol dehydrogenase, iron containing, 1
known_NIR_1207	chr1	97582414	97588456	-	97582414	97589556	A5SS	ENSMUST00000053033.14	known	0.14	3	19	3	19	y	0.30	3	7	3	7	y	0.44	14	18	14	18	y	0.00	0	13	0	13	n	0.27	7	19	7	19	y	0.56	5	4	5	4	n	0.09	2	20	2	20	y	0.11	3	24	3	24	y	0.22	2	7	2	7	n	0.20	4	16	4	16	y	0.14	2	12	2	12	y	0.22	5	18	5	18	y	ENSMUSG00000044768.17	Macir	chr1	protein_coding	macrophage immunometabolism regulator
known_NIR_1208	chr1	97582414	97589280	-	97582414	97588456	A5SS	ENSMUST00000153115.8	known	0.25	1	3	1	3	n	0.67	6	3	6	3	n	0.33	7	14	7	14	y	1.00	5	0	5	0	n	0.36	4	7	4	7	y	0.44	4	5	4	5	n	0.75	6	2	6	2	n	0.57	4	3	4	3	n	0.60	3	2	3	2	n	0.33	2	4	2	4	n	0.60	3	2	3	2	n	0.58	7	5	7	5	y	ENSMUSG00000044768.17	Macir	chr1	protein_coding	macrophage immunometabolism regulator
known_NIR_1209	chr1	97582414	97589280	-	97582414	97589556	A5SS	ENSMUST00000053033.14	known	0.05	1	19	1	19	n	0.46	6	7	6	7	y	0.28	7	18	7	18	y	0.28	5	13	5	13	y	0.17	4	19	4	19	y	0.50	4	4	4	4	n	0.23	6	20	6	20	y	0.14	4	24	4	24	y	0.30	3	7	3	7	y	0.11	2	16	2	16	y	0.20	3	12	3	12	y	0.28	7	18	7	18	y	ENSMUSG00000044768.17	Macir	chr1	protein_coding	macrophage immunometabolism regulator
known_NIR_1210	chr1	97640869	97644267	-	97640869	97647559	A5SS	ENSMUST00000042509.13	known	0.69	58	26	58	26	y	0.69	24	11	24	11	y	0.53	62	54	62	54	y	0.81	44	10	44	10	y	0.75	70	23	70	23	y	0.66	60	31	60	31	y	0.59	36	25	36	25	y	0.70	39	17	39	17	y	0.73	35	13	35	13	y	0.76	51	16	51	16	y	0.68	32	15	32	15	y	0.67	40	20	40	20	y	ENSMUSG00000040648.16	Ppip5k2	chr1	protein_coding	diphosphoinositol pentakisphosphate kinase 2
known_NIR_1211	chr1	97645286	97647559	-	97640869	97647559	A3SS	ENSMUST00000042509.13	known	0.60	39	26	39	26	y	0.45	9	11	9	11	y	0.37	32	54	32	54	y	0.76	31	10	31	10	y	0.71	56	23	56	23	y	0.49	30	31	30	31	y	0.53	28	25	28	25	y	0.63	29	17	29	17	y	0.61	20	13	20	13	y	0.67	33	16	33	16	y	0.40	10	15	10	15	y	0.60	30	20	30	20	y	ENSMUSG00000040648.16	Ppip5k2	chr1	protein_coding	diphosphoinositol pentakisphosphate kinase 2
known_NIR_1212	chr1	97647631;97649004	97648831;97651395	-	97647631	97651395	cassetteExon	ENSMUST00000042509.13	known	0.17	11.0	54	16;6	54	y	0.07	3.0	40	3;3	40	y	0.13	11.5	80	12;11	80	y	0.07	4.0	52	2;6	52	y	0.13	11.0	75	10;12	75	y	0.07	6.0	81	7;5	81	y	0.05	3.0	53	6;0	53	n	0.11	6.0	47	5;7	47	y	0.09	3.0	31	2;4	31	y	0.06	4.5	66	3;6	66	y	0.08	3.0	35	4;2	35	y	0.15	9.0	53	8;10	53	y	ENSMUSG00000040648.16	Ppip5k2	chr1	protein_coding	diphosphoinositol pentakisphosphate kinase 2
known_NIR_1213	chr1	97697980	97698269	+	97697980	97703172	A3SS	ENSMUST00000112844.10	known	0.06	2	32	2	32	y	0.07	2	25	2	25	y	0.00	0	27	0	27	n	0.11	2	16	2	16	y	0.06	2	33	2	33	y	0.18	5	23	5	23	y	0.05	1	19	1	19	n	0.09	2	20	2	20	y	0.21	4	15	4	15	y	0.29	6	15	6	15	y	0.22	5	18	5	18	y	0.00	0	36	0	36	n	ENSMUSG00000026333.15	Gin1	chr1	protein_coding	gypsy retrotransposon integrase 1
known_NIR_1214	chr1	97705244	97710863	+	97705244	97710652	A3SS	ENSMUST00000112844.10	known	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	34	0	34	n	0.00	0	5	0	5	n	0.00	0	17	0	17	n	0.00	0	4	0	4	n	0.08	1	12	1	12	n	0.14	2	12	2	12	y	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.00	0	7	0	7	n	ENSMUSG00000026333.15	Gin1	chr1	protein_coding	gypsy retrotransposon integrase 1
known_NIR_1215	chr1	97705244	97710919	+	97705244	97710652	A3SS	ENSMUST00000112844.10	known	0.20	2	8	2	8	y	0.50	4	4	4	4	n	0.06	2	34	2	34	y	0.29	2	5	2	5	n	0.06	1	17	1	17	n	0.20	1	4	1	4	n	0.14	2	12	2	12	y	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.12	1	7	1	7	n	ENSMUSG00000026333.15	Gin1	chr1	protein_coding	gypsy retrotransposon integrase 1
known_NIR_1216	chr1	97749713	97750661	-	97749713	97759180	A5SS	ENSMUST00000162681.2	known	0.92	11	1	11	1	n	0.88	15	2	15	2	y	0.87	59	9	59	9	y	0.83	25	5	25	5	y	0.76	26	8	26	8	y	0.82	14	3	14	3	y	0.91	50	5	50	5	y	0.84	16	3	16	3	y	0.88	14	2	14	2	y	0.71	15	6	15	6	y	0.84	16	3	16	3	y	0.77	10	3	10	3	y	ENSMUSG00000026335.17	Pam	chr1	protein_coding	peptidylglycine alpha-amidating monooxygenase
known_NIR_1217	chr1	97753762	97759180	-	97749713	97759180	A3SS	ENSMUST00000162681.2	known	0.00	0	1	0	1	n	0.67	4	2	4	2	n	0.44	7	9	7	9	y	0.50	5	5	5	5	y	0.47	7	8	7	8	y	0.62	5	3	5	3	n	0.67	10	5	10	5	y	0.62	5	3	5	3	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.62	5	3	5	3	n	0.00	0	3	0	3	n	ENSMUSG00000026335.17	Pam	chr1	protein_coding	peptidylglycine alpha-amidating monooxygenase
known_NIR_1218	chr1	97753762	97759180	-	97753765	97759180	A3SS	ENSMUST00000058762.15	known	0.00	0	19	0	19	n	0.14	4	25	4	25	y	0.10	7	66	7	66	y	0.28	5	13	5	13	y	0.23	7	24	7	24	y	0.17	5	25	5	25	y	0.16	10	51	10	51	y	0.24	5	16	5	16	y	0.00	0	14	0	14	n	0.00	0	25	0	25	n	0.16	5	27	5	27	y	0.00	0	20	0	20	n	ENSMUSG00000026335.17	Pam	chr1	protein_coding	peptidylglycine alpha-amidating monooxygenase
known_NIR_1219	chr1	97753765	97759180	-	97749713	97759180	A3SS	ENSMUST00000162681.2	known	0.95	19	1	19	1	n	0.93	25	2	25	2	y	0.88	66	9	66	9	y	0.72	13	5	13	5	y	0.75	24	8	24	8	y	0.89	25	3	25	3	y	0.91	51	5	51	5	y	0.84	16	3	16	3	y	0.88	14	2	14	2	y	0.81	25	6	25	6	y	0.90	27	3	27	3	y	0.87	20	3	20	3	y	ENSMUSG00000026335.17	Pam	chr1	protein_coding	peptidylglycine alpha-amidating monooxygenase
known_NIR_1220	chr1	97780957	97811851	-	97780957	97791928	5pMXE	ENSMUST00000161071.2	known	1.00	6	0	6	0	n	1.00	8	0	8	0	n	0.96	43	2	43	2	y	0.67	10	5	10	5	y	0.82	14	3	14	3	y	0.93	14	1	14	1	n	0.90	18	2	18	2	y	0.89	8	1	8	1	n	-	-	-	-	-	-	0.60	3	2	3	2	n	0.88	7	1	7	1	n	0.83	10	2	10	2	y	ENSMUSG00000026335.17	Pam	chr1	protein_coding	peptidylglycine alpha-amidating monooxygenase
known_NIR_1221	chr1	97780957	97811851	-	97780957;97792245	97791928;97811851	ES	ENSMUST00000058762.15	known	1.00	6	0.0	6	0;0	n	0.84	8	1.5	8	0;3	n	0.96	43	2.0	43	2;2	y	0.80	10	2.5	10	5;0	n	0.88	14	2.0	14	3;1	n	0.90	14	1.5	14	1;2	n	0.95	18	1.0	18	2;0	n	0.94	8	0.5	8	1;0	n	0.00	0	0.5	0	0;1	n	0.67	3	1.5	3	2;1	n	0.93	7	0.5	7	1;0	n	0.91	10	1.0	10	2;0	n	ENSMUSG00000026335.17	Pam	chr1	protein_coding	peptidylglycine alpha-amidating monooxygenase
known_NIR_1222	chr1	9868471	9935356	+	9868471	9897238	3pMXE	ENSMUST00000188625.2	known	-	-	-	-	-	-	0.50	2	2	2	2	n	0.83	5	1	5	1	n	0.43	3	4	3	4	n	0.22	2	7	2	7	n	0.00	0	6	0	6	n	0.33	2	4	2	4	n	0.33	2	4	2	4	n	0.00	0	1	0	1	n	0.38	3	5	3	5	n	0.67	2	1	2	1	n	0.19	3	13	3	13	y	ENSMUSG00000025915.15	Sgk3	chr1	protein_coding	serum/glucocorticoid regulated kinase 3
known_NIR_1223	chr1	9868471;9897344	9897238;9935356	+	9868471	9935356	cassetteExon	ENSMUST00000166384.8	known	1.00	5.0	0	0;10	0	n	0.64	3.5	2	2;5	2	n	0.38	3.0	5	1;5	5	n	0.60	4.5	3	4;5	3	y	0.80	8.0	2	7;9	2	y	1.00	6.0	0	6;6	0	n	0.75	6.0	2	4;8	2	y	0.60	3.0	2	4;2	2	n	1.00	2.0	0	1;3	0	n	0.68	6.5	3	5;8	3	y	0.50	2.0	2	1;3	2	n	0.80	12.0	3	13;11	3	y	ENSMUSG00000025915.15	Sgk3	chr1	protein_coding	serum/glucocorticoid regulated kinase 3
known_NIR_1224	chr1	9918610	9935356	+	9897344	9935356	A5SS	ENSMUST00000188782.7	known	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.29	2	5	2	5	n	0.44	4	5	4	5	n	0.10	1	9	1	9	n	0.14	1	6	1	6	n	0.20	2	8	2	8	y	0.67	4	2	4	2	n	0.50	3	3	3	3	n	0.11	1	8	1	8	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	ENSMUSG00000025915.15	Sgk3	chr1	protein_coding	serum/glucocorticoid regulated kinase 3
known_NIR_1225	chr1	9955978	9956214	+	9955978	9956272	A3SS	ENSMUST00000166384.8	known	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.09	3	30	3	30	y	0.00	0	30	0	30	n	0.00	0	15	0	15	n	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.20	1	4	1	4	n	0.06	1	17	1	17	n	0.00	0	16	0	16	n	0.14	4	24	4	24	y	ENSMUSG00000025915.15	Sgk3	chr1	protein_coding	serum/glucocorticoid regulated kinase 3
known_NIR_1226	chr10	10426700;10427007	10426818;10433589	-	10426700	10433589	cassetteExon	ENSMUST00000019974.5	known	0.01	0.5	85	1;0	85	n	0.08	4.0	48	4;4	48	y	0.04	3.0	64	2;4	64	y	0.05	3.5	67	7;0	67	n	0.01	1.0	116	2;0	116	n	0.02	1.0	43	0;2	43	n	0.04	4.5	113	4;5	113	y	0.10	7.5	68	10;5	68	y	0.02	1.5	78	3;0	78	n	0.04	4.0	91	5;3	91	y	0.05	3.5	73	5;2	73	y	0.01	1.5	103	2;1	103	n	ENSMUSG00000019832.6	Rab32	chr10	protein_coding	RAB32, member RAS oncogene family
known_NIR_1227	chr10	105677434	105678403	+	105677516	105678403	A5SS	ENSMUST00000020049.9	known	0.00	0	55	0	55	n	0.00	0	56	0	56	n	0.00	0	59	0	59	n	0.00	0	41	0	41	n	0.05	3	59	3	59	y	0.00	0	38	0	38	n	0.00	0	71	0	71	n	0.00	0	45	0	45	n	0.00	0	32	0	32	n	0.04	2	49	2	49	y	0.00	0	44	0	44	n	0.00	0	57	0	57	n	ENSMUSG00000019897.9	Ccdc59	chr10	protein_coding	coiled-coil domain containing 59
known_NIR_1228	chr10	106801916	106802809	-	106798886	106802809	A3SS	ENSMUST00000165067.9	known	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.14	1	6	1	6	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	13	0	13	n	0.00	0	2	0	2	n	0.23	3	10	3	10	y	0.06	1	17	1	17	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	ENSMUSG00000035948.14	Acss3	chr10	protein_coding	acyl-CoA synthetase short-chain family member 3
known_NIR_1229	chr10	107107803	107215941	+	107107803;107159890	107159772;107215941	ES	ENSMUST00000020057.16	known	0.06	2	32.0	2	28;36	y	0.11	5	39.0	5	46;32	y	0.00	0	1.5	0	2;1	n	0.14	6	37.5	6	46;29	y	0.13	6	41.0	6	47;35	y	0.00	0	5.0	0	4;6	n	0.15	5	28.5	5	26;31	y	0.00	0	5.0	0	3;7	n	0.05	2	39.0	2	47;31	y	0.02	1	52.5	1	60;45	n	0.13	6	39.5	6	39;40	y	0.17	6	30.0	6	37;23	y	ENSMUSG00000019906.16	Lin7a	chr10	protein_coding	lin-7 homolog A (C. elegans)
known_NIR_1230	chr10	107216012;107216164	107216088;107218365	+	107216012	107218365	cassetteExon	ENSMUST00000020057.16	known	0.15	7.0	39	6;8	39	y	0.20	8.5	35	7;10	35	y	0.33	0.5	1	1;0	1	n	0.16	8.5	45	6;11	45	y	0.20	10.0	39	11;9	39	y	0.00	0.0	1	0;0	1	n	0.11	3.5	29	3;4	29	y	0.00	0.0	8	0;0	8	n	0.14	5.5	35	4;7	35	y	0.12	8.0	60	5;11	60	y	0.09	4.0	39	5;3	39	y	0.20	10.0	39	6;14	39	y	ENSMUSG00000019906.16	Lin7a	chr10	protein_coding	lin-7 homolog A (C. elegans)
known_NIR_1231	chr10	108087805	108089186	+	108087805;108088785	108088618;108089186	ES	ENSMUST00000219263.2	known	0.17	3	15.0	3	13;17	y	0.32	3	6.5	3	7;6	y	0.28	5	13.0	5	14;12	y	0.13	2	13.5	2	16;11	y	0.31	9	20.5	9	20;21	y	0.24	3	9.5	3	12;7	y	0.11	2	17.0	2	20;14	y	0.10	1	9.5	1	10;9	n	0.13	1	6.5	1	6;7	n	0.19	3	12.5	3	14;11	y	0.17	2	10.0	2	12;8	y	0.38	12	19.5	12	22;17	y	ENSMUSG00000019907.11	Ppp1r12a	chr10	protein_coding	protein phosphatase 1, regulatory subunit 12A
known_NIR_1232	chr10	108087805	108089186	+	108088785	108089186	5pMXE	ENSMUST00000219068.2	known	0.15	3	17	3	17	y	0.33	3	6	3	6	n	0.29	5	12	5	12	y	0.15	2	11	2	11	y	0.30	9	21	9	21	y	0.30	3	7	3	7	y	0.12	2	14	2	14	y	0.10	1	9	1	9	n	0.12	1	7	1	7	n	0.21	3	11	3	11	y	0.20	2	8	2	8	y	0.41	12	17	12	17	y	ENSMUSG00000019907.11	Ppp1r12a	chr10	protein_coding	protein phosphatase 1, regulatory subunit 12A
known_NIR_1233	chr10	108087805;108089356	108089186;108095617	+	108087805;108088785	108088618;108095617	MXE	ENSMUST00000219759.2	known	0.62	12.5	7.5	3;22	13;2	y	0.69	9.0	4.0	3;15	7;1	n	0.74	20.0	7.0	5;35	14;0	n	0.52	8.5	8.0	2;15	16;0	n	0.65	18.5	10.0	9;28	20;0	n	0.58	9.0	6.5	3;15	12;1	n	0.44	9.0	11.5	2;16	20;3	y	0.63	8.5	5.0	1;16	10;0	n	0.67	7.0	3.5	1;13	6;1	n	0.62	12.0	7.5	3;21	14;1	n	0.48	5.5	6.0	2;9	12;0	n	0.55	13.5	11.0	12;15	22;0	n	ENSMUSG00000019907.11	Ppp1r12a	chr10	protein_coding	protein phosphatase 1, regulatory subunit 12A
known_NIR_1234	chr10	108088785	108095617	+	108088785	108089186	3pMXE	ENSMUST00000219068.2	known	0.11	2	17	2	17	y	0.14	1	6	1	6	n	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.00	0	21	0	21	n	0.12	1	7	1	7	n	0.18	3	14	3	14	y	0.00	0	9	0	9	n	0.12	1	7	1	7	n	0.08	1	11	1	11	n	0.00	0	8	0	8	n	0.00	0	17	0	17	n	ENSMUSG00000019907.11	Ppp1r12a	chr10	protein_coding	protein phosphatase 1, regulatory subunit 12A
known_NIR_1235	chr10	108088785	108095617	+	108088785;108089356	108089186;108095617	ES	ENSMUST00000219263.2	known	0.09	2	19.5	2	17;22	y	0.09	1	10.5	1	6;15	n	0.00	0	23.5	0	12;35	n	0.00	0	13.0	0	11;15	n	0.00	0	24.5	0	21;28	n	0.08	1	11.0	1	7;15	n	0.17	3	15.0	3	14;16	y	0.00	0	12.5	0	9;16	n	0.09	1	10.0	1	7;13	n	0.06	1	16.0	1	11;21	n	0.00	0	8.5	0	8;9	n	0.00	0	16.0	0	17;15	n	ENSMUSG00000019907.11	Ppp1r12a	chr10	protein_coding	protein phosphatase 1, regulatory subunit 12A
known_NIR_1236	chr10	108088785	108095617	+	108089356	108095617	5pMXE	ENSMUST00000218161.2	known	0.08	2	22	2	22	y	0.06	1	15	1	15	n	0.00	0	35	0	35	n	0.00	0	15	0	15	n	0.00	0	28	0	28	n	0.06	1	15	1	15	n	0.16	3	16	3	16	y	0.00	0	16	0	16	n	0.07	1	13	1	13	n	0.05	1	21	1	21	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	ENSMUSG00000019907.11	Ppp1r12a	chr10	protein_coding	protein phosphatase 1, regulatory subunit 12A
known_NIR_1237	chr10	108169172	108227559	+	108169172;108218722	108218591;108227559	ES	ENSMUST00000095313.5	known	0.00	0	22.0	0	21;23	n	0.00	0	29.0	0	29;29	n	0.00	0	68.0	0	66;70	n	0.00	0	42.0	0	43;41	n	0.00	0	52.0	0	51;53	n	0.06	2	32.5	2	44;21	y	0.00	0	51.0	0	52;50	n	0.00	0	46.0	0	45;47	n	0.00	0	29.0	0	28;30	n	0.00	0	51.0	0	56;46	n	0.00	0	29.5	0	27;32	n	0.00	0	38.5	0	36;41	n	ENSMUSG00000035873.9	Pawr	chr10	protein_coding	PRKC, apoptosis, WT1, regulator
known_NIR_1238	chr10	11047738	11054478	+	11047745	11054478	A5SS	ENSMUST00000159810.8	known	1.00	3	0	3	0	n	1.00	3	0	3	0	n	0.94	15	1	15	1	n	1.00	11	0	11	0	n	1.00	11	0	11	0	n	1.00	4	0	4	0	n	1.00	7	0	7	0	n	1.00	7	0	7	0	n	0.88	7	1	7	1	n	1.00	14	0	14	0	n	0.75	6	2	6	2	n	0.77	10	3	10	3	y	ENSMUSG00000090112.9	Shprh	chr10	protein_coding	SNF2 histone linker PHD RING helicase
known_NIR_1239	chr10	11063780	11065375	+	11063909	11065375	A5SS	ENSMUST00000044053.13	known	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	23	0	23	n	0.00	0	19	0	19	n	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.18	2	9	2	9	y	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.00	0	17	0	17	n	ENSMUSG00000090112.9	Shprh	chr10	protein_coding	SNF2 histone linker PHD RING helicase
known_NIR_1240	chr10	110771177	110774498	+	110771177	110773598	3pMXE	ENSMUST00000220054.2	known	0.01	2	183	2	183	y	0.00	0	146	0	146	n	0.01	1	101	1	101	n	0.00	0	153	0	153	n	0.00	0	175	0	175	n	0.02	1	56	1	56	n	0.00	0	203	0	203	n	0.00	0	77	0	77	n	0.01	1	151	1	151	n	0.01	3	230	3	230	y	0.00	1	220	1	220	n	0.00	0	230	0	230	n	ENSMUSG00000020186.8	Csrp2	chr10	protein_coding	cysteine and glycine-rich protein 2
known_NIR_1241	chr10	110771177	110774498	+	110771177;110773727	110773598;110774498	ES	ENSMUST00000020403.7	known	0.01	2	180.0	2	183;177	y	0.00	0	155.5	0	146;165	n	0.01	1	114.0	1	101;127	n	0.00	0	177.0	0	153;201	n	0.00	0	190.5	0	175;206	n	0.02	1	55.5	1	56;55	n	0.00	0	241.5	0	203;280	n	0.00	0	91.5	0	77;106	n	0.01	1	159.5	1	151;168	n	0.01	3	274.0	3	230;318	y	0.00	1	221.5	1	220;223	n	0.00	0	261.0	0	230;292	n	ENSMUSG00000020186.8	Csrp2	chr10	protein_coding	cysteine and glycine-rich protein 2
known_NIR_1242	chr10	110796998	110803545	-	110798265	110803545	3pMXE	ENSMUST00000099285.4	known	0.50	2	2	2	2	n	1.00	6	0	6	0	n	1.00	7	0	7	0	n	1.00	10	0	10	0	n	0.90	18	2	18	2	y	0.83	10	2	10	2	y	1.00	9	0	9	0	n	0.83	5	1	5	1	n	1.00	6	0	6	0	n	1.00	10	0	10	0	n	0.89	8	1	8	1	n	1.00	12	0	12	0	n	ENSMUSG00000035798.15	Zdhhc17	chr10	protein_coding	zinc finger, DHHC domain containing 17
known_NIR_1243	chr10	110803666	110804290	-	110803707	110804290	A3SS	ENSMUST00000041723.15	known	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.21	4	15	4	15	y	0.08	1	12	1	12	n	0.09	1	10	1	10	n	0.33	2	4	2	4	n	0.00	0	9	0	9	n	0.22	2	7	2	7	n	0.44	4	5	4	5	n	0.57	4	3	4	3	n	0.00	0	8	0	8	n	0.14	2	12	2	12	y	ENSMUSG00000035798.15	Zdhhc17	chr10	protein_coding	zinc finger, DHHC domain containing 17
known_NIR_1244	chr10	111040701	111069414	+	111040701;111060569	111060533;111069414	ES	ENSMUST00000105275.9	known	0.25	2	6.0	2	7;5	y	0.67	4	2.0	4	2;2	n	0.27	2	5.5	2	5;6	y	0.55	12	10.0	12	9;11	y	0.52	7	6.5	7	7;6	y	0.56	5	4.0	5	4;4	y	0.58	14	10.0	14	11;9	y	0.56	5	4.0	5	5;3	y	0.67	7	3.5	7	5;2	y	0.40	7	10.5	7	9;12	y	0.25	1	3.0	1	2;4	n	0.84	8	1.5	8	1;2	n	ENSMUSG00000020189.16	Osbpl8	chr10	protein_coding	oxysterol binding protein-like 8
known_NIR_1245	chr10	111084509	111091549	+	111069551	111091549	A5SS	ENSMUST00000105275.9	known	0.00	0	19	0	19	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	25	0	25	n	0.19	3	13	3	13	y	0.00	0	7	0	7	n	0.00	0	20	0	20	n	0.00	0	22	0	22	n	0.06	1	17	1	17	n	0.00	0	18	0	18	n	0.00	0	5	0	5	n	0.09	2	21	2	21	y	ENSMUSG00000020189.16	Osbpl8	chr10	protein_coding	oxysterol binding protein-like 8
known_NIR_1246	chr10	111330685	111330912	+	111330685	111331186	A3SS	ENSMUST00000065917.16	known	0.09	16	171	16	171	y	0.07	15	191	15	191	y	0.04	21	489	21	489	y	0.05	10	177	10	177	y	0.07	19	259	19	259	y	0.05	16	307	16	307	y	0.05	21	377	21	377	y	0.06	14	205	14	205	y	0.07	13	169	13	169	y	0.05	12	244	12	244	y	0.08	15	173	15	173	y	0.08	22	237	22	237	y	ENSMUSG00000058799.17	Nap1l1	chr10	protein_coding	nucleosome assembly protein 1-like 1
known_NIR_1247	chr10	11157467	11165264	+	11157244	11165264	A5SS	ENSMUST00000129456.8	known	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.20	3	12	3	12	y	-	-	-	-	-	-	0.00	0	8	0	8	n	0.07	1	13	1	13	n	0.00	0	4	0	4	n	0.17	2	10	2	10	y	ENSMUSG00000047648.14	Fbxo30	chr10	protein_coding	F-box protein 30
known_NIR_1248	chr10	115183688	115184812	-	115183688	115195559	A5SS	ENSMUST00000218731.2	known	0.00	0	302	0	302	n	0.00	0	246	0	246	n	0.02	4	195	4	195	y	0.00	0	371	0	371	n	0.00	1	376	1	376	n	0.01	1	133	1	133	n	0.00	0	385	0	385	n	0.00	0	150	0	150	n	0.00	0	280	0	280	n	0.00	1	419	1	419	n	0.01	2	281	2	281	y	0.00	1	268	1	268	n	ENSMUSG00000069520.7	Tmem19	chr10	protein_coding	transmembrane protein 19
known_NIR_1249	chr10	115195672	115197714	-	115195672	115197812	A5SS	ENSMUST00000218731.2	known	0.92	228	20	228	20	y	0.90	162	18	162	18	y	0.89	158	20	158	20	y	0.90	303	34	303	34	y	0.90	286	32	286	32	y	0.86	106	17	106	17	y	0.93	304	23	304	23	y	0.87	143	21	143	21	y	0.91	238	24	238	24	y	0.92	352	30	352	30	y	0.91	221	21	221	21	y	0.89	226	27	226	27	y	ENSMUSG00000069520.7	Tmem19	chr10	protein_coding	transmembrane protein 19
known_NIR_1250	chr10	115195672;115197864	115197812;115198292	-	115195672;115197752	115197714;115198292	MXE	ENSMUST00000217884.2	known	0.12	15.5	115.0	20;11	228;2	y	0.13	12.0	81.5	18;6	162;1	n	0.19	19.0	80.5	20;18	158;3	y	0.12	20.0	152.5	34;6	303;2	y	0.13	21.0	145.0	32;10	286;4	y	0.17	11.0	53.0	17;5	106;0	n	0.11	18.5	154.0	23;14	304;4	y	0.15	13.0	72.0	21;5	143;1	n	0.12	16.0	120.5	24;8	238;3	y	0.12	25.5	180.0	30;21	352;8	y	0.13	16.0	110.5	21;11	221;0	n	0.12	15.5	114.0	27;4	226;2	y	ENSMUSG00000069520.7	Tmem19	chr10	protein_coding	transmembrane protein 19
known_NIR_1251	chr10	115197752	115198292	-	115197752	115197865	5pMXE	ENSMUST00000219890.2	known	0.67	2	1	2	1	n	0.20	1	4	1	4	n	1.00	3	0	3	0	n	0.29	2	5	2	5	n	0.67	4	2	4	2	n	0.00	0	2	0	2	n	0.44	4	5	4	5	n	0.20	1	4	1	4	n	1.00	3	0	3	0	n	0.67	8	4	8	4	y	0.00	0	2	0	2	n	1.00	2	0	2	0	n	ENSMUSG00000069520.7	Tmem19	chr10	protein_coding	transmembrane protein 19
known_NIR_1252	chr10	115197752	115198292	-	115197864	115198292	A3SS	ENSMUST00000220336.2	known	0.15	2	11	2	11	y	0.14	1	6	1	6	n	0.14	3	18	3	18	y	0.25	2	6	2	6	n	0.29	4	10	4	10	y	0.00	0	5	0	5	n	0.22	4	14	4	14	y	0.17	1	5	1	5	n	0.27	3	8	3	8	y	0.28	8	21	8	21	y	0.00	0	11	0	11	n	0.33	2	4	2	4	n	ENSMUSG00000069520.7	Tmem19	chr10	protein_coding	transmembrane protein 19
known_NIR_1253	chr10	115197864	115197957	-	115197864	115197970	A5SS	ENSMUST00000218731.2	known	0.86	179	30	179	30	y	0.95	151	8	151	8	y	0.90	140	15	140	15	y	0.87	234	36	234	36	y	0.92	248	23	248	23	y	0.92	71	6	71	6	y	0.80	211	52	211	52	y	0.93	124	10	124	10	y	0.86	157	26	157	26	y	0.89	252	31	252	31	y	0.87	177	27	177	27	y	0.85	178	31	178	31	y	ENSMUSG00000069520.7	Tmem19	chr10	protein_coding	transmembrane protein 19
known_NIR_1254	chr10	115197864	115198292	-	115197864	115197957	5pMXE	ENSMUST00000092170.7	known	0.06	11	179	11	179	y	0.04	6	151	6	151	y	0.11	18	140	18	140	y	0.03	6	234	6	234	y	0.04	10	248	10	248	y	0.07	5	71	5	71	y	0.06	14	211	14	211	y	0.04	5	124	5	124	y	0.05	8	157	8	157	y	0.08	21	252	21	252	y	0.06	11	177	11	177	y	0.02	4	178	4	178	y	ENSMUSG00000069520.7	Tmem19	chr10	protein_coding	transmembrane protein 19
known_NIR_1255	chr10	115197864	115198292	-	115197864	115197970	5pMXE	ENSMUST00000218731.2	known	0.27	11	30	11	30	y	0.43	6	8	6	8	y	0.55	18	15	18	15	y	0.14	6	36	6	36	y	0.30	10	23	10	23	y	0.45	5	6	5	6	y	0.21	14	52	14	52	y	0.33	5	10	5	10	y	0.24	8	26	8	26	y	0.40	21	31	21	31	y	0.29	11	27	11	27	y	0.11	4	31	4	31	y	ENSMUSG00000069520.7	Tmem19	chr10	protein_coding	transmembrane protein 19
known_NIR_1256	chr10	115208851	115220110	-	115208851;115212452	115212257;115220110	ES	ENSMUST00000218842.2	known	0.25	4	12.0	4	18;6	y	0.29	5	12.5	5	11;14	y	0.13	7	45.5	7	59;32	y	0.19	5	21.5	5	23;20	y	0.14	4	25.5	4	25;26	y	0.00	0	13.5	0	13;14	n	0.00	0	16.0	0	20;12	n	0.11	2	17.0	2	21;13	y	0.15	2	11.5	2	12;11	y	0.03	1	28.0	1	34;22	n	0.08	1	11.5	1	11;12	n	0.00	0	13.5	0	18;9	n	ENSMUSG00000020137.6	Thap2	chr10	protein_coding	THAP domain containing, apoptosis associated protein 2
known_NIR_1257	chr10	116137584	116138013	+	116119782	116138013	A5SS	ENSMUST00000217925.2	known	1.00	5	0	5	0	n	0.67	2	1	2	1	n	0.50	1	1	1	1	n	1.00	3	0	3	0	n	0.73	11	4	11	4	y	1.00	17	0	17	0	n	0.75	6	2	6	2	n	1.00	4	0	4	0	n	0.33	1	2	1	2	n	0.75	6	2	6	2	n	1.00	2	0	2	0	n	1.00	1	0	1	0	n	ENSMUSG00000020154.11	Ptprb	chr10	protein_coding	protein tyrosine phosphatase, receptor type, B
known_NIR_1258	chr10	116337222	116339940	-	116337222	116353222	A5SS	ENSMUST00000169937.8	known	0.97	34	1	34	1	n	1.00	20	0	20	0	n	0.98	49	1	49	1	n	0.96	49	2	49	2	y	0.98	50	1	50	1	n	1.00	18	0	18	0	n	1.00	48	0	48	0	n	1.00	21	0	21	0	n	1.00	29	0	29	0	n	0.98	40	1	40	1	n	1.00	37	0	37	0	n	0.97	58	2	58	2	y	ENSMUSG00000020166.16	Cnot2	chr10	protein_coding	CCR4-NOT transcription complex, subunit 2
known_NIR_1259	chr10	116340019	116342946	-	116340019;116342316	116342134;116342946	ES	ENSMUST00000168036.8	known	0.00	0	38.0	0	36;40	n	0.00	0	31.5	0	34;29	n	0.02	1	57.5	1	55;60	n	0.02	1	45.5	1	42;49	n	0.00	0	61.5	0	55;68	n	0.00	0	32.5	0	26;39	n	0.00	0	57.5	0	62;53	n	0.00	0	38.0	0	31;45	n	0.00	0	33.0	0	31;35	n	0.05	3	54.5	3	53;56	y	0.00	0	41.0	0	50;32	n	0.03	2	62.5	2	70;55	y	ENSMUSG00000020166.16	Cnot2	chr10	protein_coding	CCR4-NOT transcription complex, subunit 2
known_NIR_1260	chr10	116340019	116342946	-	116342316	116342946	3pMXE	ENSMUST00000218490.2	known	0.00	0	40	0	40	n	0.00	0	29	0	29	n	0.02	1	60	1	60	n	0.02	1	49	1	49	n	0.00	0	68	0	68	n	0.00	0	39	0	39	n	0.00	0	53	0	53	n	0.00	0	45	0	45	n	0.00	0	35	0	35	n	0.05	3	56	3	56	y	0.00	0	32	0	32	n	0.04	2	55	2	55	y	ENSMUSG00000020166.16	Cnot2	chr10	protein_coding	CCR4-NOT transcription complex, subunit 2
known_NIR_1261	chr10	116343093	116353222	-	116337222	116353222	A3SS	ENSMUST00000169937.8	known	0.96	24	1	24	1	n	1.00	25	0	25	0	n	0.97	38	1	38	1	n	0.95	37	2	37	2	y	0.98	56	1	56	1	n	1.00	29	0	29	0	n	1.00	40	0	40	0	n	1.00	31	0	31	0	n	1.00	30	0	30	0	n	0.98	45	1	45	1	n	1.00	21	0	21	0	n	0.97	70	2	70	2	y	ENSMUSG00000020166.16	Cnot2	chr10	protein_coding	CCR4-NOT transcription complex, subunit 2
known_NIR_1262	chr10	116343093	116363732	-	116343093;116353288	116353222;116363732	ES	ENSMUST00000169576.8	known	0.00	0	29.0	0	24;34	n	0.10	3	27.0	3	25;29	y	0.10	5	46.0	5	38;54	y	0.05	2	42.0	2	37;47	y	0.00	0	53.5	0	56;51	n	0.07	2	28.5	2	29;28	y	0.04	2	48.0	2	40;56	y	0.00	0	33.5	0	31;36	n	0.00	0	30.0	0	30;30	n	0.02	1	57.5	1	45;70	n	0.13	4	27.0	4	21;33	y	0.04	3	71.5	3	70;73	y	ENSMUSG00000020166.16	Cnot2	chr10	protein_coding	CCR4-NOT transcription complex, subunit 2
known_NIR_1263	chr10	116343093	116363732	-	116353288	116363732	A3SS&ES	ENSMUST00000169937.8	known	0.00	0	34	0	34	n	0.09	3	29	3	29	y	0.08	5	54	5	54	y	0.04	2	47	2	47	y	0.00	0	51	0	51	n	0.07	2	28	2	28	y	0.03	2	56	2	56	y	0.00	0	36	0	36	n	0.00	0	30	0	30	n	0.01	1	70	1	70	n	0.11	4	33	4	33	y	0.04	3	73	3	73	y	ENSMUSG00000020166.16	Cnot2	chr10	protein_coding	CCR4-NOT transcription complex, subunit 2
known_NIR_1264	chr10	116343093	116384938	-	116363854	116384938	A3SS&ES	ENSMUST00000169937.8	known	0.00	0	17	0	17	n	0.05	1	21	1	21	n	0.00	0	19	0	19	n	0.00	0	23	0	23	n	0.00	0	28	0	28	n	0.00	0	11	0	11	n	0.00	0	24	0	24	n	0.00	0	15	0	15	n	0.08	2	24	2	24	y	0.00	0	23	0	23	n	0.00	0	20	0	20	n	0.00	0	34	0	34	n	ENSMUSG00000020166.16	Cnot2	chr10	protein_coding	CCR4-NOT transcription complex, subunit 2
known_NIR_1265	chr10	116343093;116363854	116363732;116384938	-	116343093;116353288	116353222;116384938	MXE	ENSMUST00000168036.8	known	0.41	8.5	12.0	0;17	24;0	n	0.49	12.0	12.5	3;21	25;0	n	0.35	12.0	22.5	5;19	38;7	y	0.40	12.5	19.0	2;23	37;1	n	0.33	14.0	28.5	0;28	56;1	n	0.29	6.5	16.0	2;11	29;3	y	0.39	13.0	20.5	2;24	40;1	n	0.33	7.5	15.5	0;15	31;0	n	0.44	12.0	15.5	0;24	30;1	n	0.34	12.0	23.5	1;23	45;2	n	0.53	12.0	10.5	4;20	21;0	n	0.33	18.5	37.5	3;34	70;5	y	ENSMUSG00000020166.16	Cnot2	chr10	protein_coding	CCR4-NOT transcription complex, subunit 2
known_NIR_1266	chr10	116343093;116363854	116363732;116417358	-	116343093;116385080	116353222;116417358	MXE	ENSMUST00000168036.8	known	0.00	0.0	19.5	0;0	24;15	n	0.08	1.5	16.5	3;0	25;8	n	0.07	2.5	31.0	5;0	38;24	n	0.06	2.0	30.5	2;2	37;24	y	0.00	0.0	37.0	0;0	56;18	n	0.05	1.0	18.0	2;0	29;7	n	0.05	1.5	29.5	2;1	40;19	n	0.00	0.0	23.0	0;0	31;15	n	0.00	0.0	19.5	0;0	30;9	n	0.01	0.5	34.5	1;0	45;24	n	0.08	2.0	22.0	4;0	21;23	n	0.03	1.5	46.0	3;0	70;22	n	ENSMUSG00000020166.16	Cnot2	chr10	protein_coding	CCR4-NOT transcription complex, subunit 2
known_NIR_1267	chr10	116346362	116353222	-	116343093	116353222	A3SS	ENSMUST00000168036.8	known	0.00	0	24	0	24	n	0.00	0	25	0	25	n	0.03	1	38	1	38	n	0.05	2	37	2	37	y	0.00	0	56	0	56	n	0.03	1	29	1	29	n	0.00	0	40	0	40	n	0.00	0	31	0	31	n	0.00	0	30	0	30	n	0.00	0	45	0	45	n	0.00	0	21	0	21	n	0.03	2	70	2	70	y	ENSMUSG00000020166.16	Cnot2	chr10	protein_coding	CCR4-NOT transcription complex, subunit 2
known_NIR_1268	chr10	116353288;116363854	116363732;116384938	-	116353288	116384938	cassetteExon	ENSMUST00000168036.8	known	1.00	25.5	0	34;17	0	n	1.00	25.0	0	29;21	0	n	0.84	36.5	7	54;19	7	y	0.97	35.0	1	47;23	1	n	0.98	39.5	1	51;28	1	n	0.87	19.5	3	28;11	3	y	0.98	40.0	1	56;24	1	n	1.00	25.5	0	36;15	0	n	0.96	27.0	1	30;24	1	n	0.96	46.5	2	70;23	2	y	1.00	26.5	0	33;20	0	n	0.91	53.5	5	73;34	5	y	ENSMUSG00000020166.16	Cnot2	chr10	protein_coding	CCR4-NOT transcription complex, subunit 2
known_NIR_1269	chr10	116363854	116373126	-	116363854	116417358	A5SS	ENSMUST00000166166.8	known	1.00	11	0	11	0	n	1.00	7	0	7	0	n	1.00	15	0	15	0	n	0.83	10	2	10	2	y	1.00	20	0	20	0	n	1.00	8	0	8	0	n	0.95	18	1	18	1	n	1.00	9	0	9	0	n	1.00	7	0	7	0	n	1.00	11	0	11	0	n	1.00	8	0	8	0	n	1.00	16	0	16	0	n	ENSMUSG00000020166.16	Cnot2	chr10	protein_coding	CCR4-NOT transcription complex, subunit 2
known_NIR_1270	chr10	116363854	116384938	-	116363854;116373353	116373126;116384938	ES	ENSMUST00000169576.8	known	0.76	17	5.5	17	11;0	n	0.84	21	4.0	21	7;1	n	0.68	19	9.0	19	15;3	y	0.81	23	5.5	23	10;1	n	0.72	28	11.0	28	20;2	y	0.73	11	4.0	11	8;0	n	0.69	24	11.0	24	18;4	y	0.73	15	5.5	15	9;2	y	0.87	24	3.5	24	7;0	n	0.81	23	5.5	23	11;0	n	0.80	20	5.0	20	8;2	y	0.81	34	8.0	34	16;0	n	ENSMUSG00000020166.16	Cnot2	chr10	protein_coding	CCR4-NOT transcription complex, subunit 2
known_NIR_1271	chr10	116363854	116417358	-	116363854;116385080	116384938;116417358	ES	ENSMUST00000105267.8	known	0.00	0	16.0	0	17;15	n	0.00	0	14.5	0	21;8	n	0.00	0	21.5	0	19;24	n	0.08	2	23.5	2	23;24	y	0.00	0	23.0	0	28;18	n	0.00	0	9.0	0	11;7	n	0.04	1	21.5	1	24;19	n	0.00	0	15.0	0	15;15	n	0.00	0	16.5	0	24;9	n	0.00	0	23.5	0	23;24	n	0.00	0	21.5	0	20;23	n	0.00	0	28.0	0	34;22	n	ENSMUSG00000020166.16	Cnot2	chr10	protein_coding	CCR4-NOT transcription complex, subunit 2
known_NIR_1272	chr10	116363854;116373183	116373126;116384938	-	116363854	116384938	cassetteExon	ENSMUST00000105267.8	known	0.26	6.0	17	11;1	17	n	0.16	4.0	21	7;1	21	n	0.37	11.0	19	15;7	19	y	0.23	7.0	23	10;4	23	y	0.28	11.0	28	20;2	28	y	0.35	6.0	11	8;4	11	y	0.33	12.0	24	18;6	24	y	0.32	7.0	15	9;5	15	y	0.17	5.0	24	7;3	24	y	0.25	7.5	23	11;4	23	y	0.22	5.5	20	8;3	20	y	0.30	14.5	34	16;13	34	y	ENSMUSG00000020166.16	Cnot2	chr10	protein_coding	CCR4-NOT transcription complex, subunit 2
known_NIR_1273	chr10	116373183	116384938	-	116353288	116384938	A3SS	ENSMUST00000168036.8	known	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.50	7	7	7	7	y	0.80	4	1	4	1	n	0.67	2	1	2	1	n	0.57	4	3	4	3	n	0.86	6	1	6	1	n	1.00	5	0	5	0	n	0.75	3	1	3	1	n	0.67	4	2	4	2	n	1.00	3	0	3	0	n	0.72	13	5	13	5	y	ENSMUSG00000020166.16	Cnot2	chr10	protein_coding	CCR4-NOT transcription complex, subunit 2
known_NIR_1274	chr10	116373183	116384938	-	116373353	116384938	A3SS	ENSMUST00000169576.8	known	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.70	7	3	7	3	y	0.80	4	1	4	1	n	0.50	2	2	2	2	n	1.00	4	0	4	0	n	0.60	6	4	6	4	y	0.71	5	2	5	2	n	1.00	3	0	3	0	n	1.00	4	0	4	0	n	0.60	3	2	3	2	n	1.00	13	0	13	0	n	ENSMUSG00000020166.16	Cnot2	chr10	protein_coding	CCR4-NOT transcription complex, subunit 2
known_NIR_1275	chr10	116373353	116384938	-	116353288	116384938	A3SS	ENSMUST00000168036.8	known	-	-	-	-	-	-	1.00	1	0	1	0	n	0.30	3	7	3	7	y	0.50	1	1	1	1	n	0.67	2	1	2	1	n	0.00	0	3	0	3	n	0.80	4	1	4	1	n	1.00	2	0	2	0	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	2	0	2	0	n	0.00	0	5	0	5	n	ENSMUSG00000020166.16	Cnot2	chr10	protein_coding	CCR4-NOT transcription complex, subunit 2
known_NIR_1276	chr10	116385010	116417358	-	116385080	116417358	A3SS	ENSMUST00000168036.8	known	0.06	1	15	1	15	n	0.00	0	8	0	8	n	0.20	6	24	6	24	y	0.00	0	24	0	24	n	0.10	2	18	2	18	y	0.22	2	7	2	7	n	0.17	4	19	4	19	y	0.21	4	15	4	15	y	0.00	0	9	0	9	n	0.14	4	24	4	24	y	0.04	1	23	1	23	n	0.12	3	22	3	22	y	ENSMUSG00000020166.16	Cnot2	chr10	protein_coding	CCR4-NOT transcription complex, subunit 2
known_NIR_1277	chr10	116385080	116416386	-	116385080	116417358	A5SS	ENSMUST00000168036.8	known	0.12	2	15	2	15	y	0.00	0	8	0	8	n	0.00	0	24	0	24	n	0.00	0	24	0	24	n	0.18	4	18	4	18	y	0.12	1	7	1	7	n	0.00	0	19	0	19	n	0.12	2	15	2	15	y	0.10	1	9	1	9	n	0.08	2	24	2	24	y	0.15	4	23	4	23	y	0.15	4	22	4	22	y	ENSMUSG00000020166.16	Cnot2	chr10	protein_coding	CCR4-NOT transcription complex, subunit 2
known_NIR_1278	chr10	116755556;116764189	116764094;116773302	-	116755556	116773302	cassetteExon	ENSMUST00000020375.7	known	0.97	85.0	3	69;101	3	y	0.97	63.0	2	65;61	2	y	1.00	81.0	0	87;75	0	n	0.97	85.5	3	85;86	3	y	0.98	119.0	3	123;115	3	y	0.97	29.5	1	36;23	1	n	0.92	88.5	8	91;86	8	y	0.90	37.5	4	43;32	4	y	1.00	77.5	0	86;69	0	n	0.97	113.5	3	123;104	3	y	0.96	75.0	3	70;80	3	y	1.00	101.5	0	96;107	0	n	ENSMUSG00000064181.7	Rab3ip	chr10	protein_coding	RAB3A interacting protein
known_NIR_1279	chr10	116775381	116786165	-	116775386	116786165	A3SS	ENSMUST00000020375.7	known	0.16	3	16	3	16	y	0.07	1	14	1	14	n	0.14	5	30	5	30	y	0.12	5	38	5	38	y	0.09	3	30	3	30	y	0.20	3	12	3	12	y	0.18	5	23	5	23	y	0.12	3	22	3	22	y	0.24	4	13	4	13	y	0.13	4	26	4	26	y	0.05	1	21	1	21	n	0.09	4	42	4	42	y	ENSMUSG00000064181.7	Rab3ip	chr10	protein_coding	RAB3A interacting protein
known_NIR_1280	chr10	116887212	116888921	-	116887181	116888921	A3SS	ENSMUST00000047672.9	known	0.00	0	434	0	434	n	0.00	0	429	0	429	n	0.00	2	428	2	428	y	0.00	0	394	0	394	n	0.00	0	461	0	461	n	0.00	0	206	0	206	n	0.00	0	536	0	536	n	0.00	0	167	0	167	n	0.00	0	340	0	340	n	0.00	0	472	0	472	n	0.00	0	542	0	542	n	0.00	0	482	0	482	n	ENSMUSG00000034024.9	Cct2	chr10	protein_coding	chaperonin containing Tcp1, subunit 2 (beta)
known_NIR_1281	chr10	116891286	116891945	-	116891140	116891945	A3SS	ENSMUST00000047672.9	known	0.02	8	353	8	353	y	0.01	4	330	4	330	y	0.03	11	419	11	419	y	0.01	3	384	3	384	y	0.02	7	422	7	422	y	0.01	3	199	3	199	y	0.00	2	423	2	423	y	0.00	1	203	1	203	n	0.01	3	321	3	321	y	0.02	7	454	7	454	y	0.00	2	399	2	399	y	0.00	1	456	1	456	n	ENSMUSG00000034024.9	Cct2	chr10	protein_coding	chaperonin containing Tcp1, subunit 2 (beta)
known_NIR_1282	chr10	116898955	116899065	-	116898955	116899611	A5SS	ENSMUST00000047672.9	known	0.01	1	162	1	162	n	0.01	1	100	1	100	n	0.03	7	244	7	244	y	0.00	1	230	1	230	n	0.00	0	210	0	210	n	0.01	1	97	1	97	n	0.00	1	203	1	203	n	0.00	0	86	0	86	n	0.00	0	159	0	159	n	0.01	2	171	2	171	y	0.02	3	152	3	152	y	0.02	3	188	3	188	y	ENSMUSG00000034024.9	Cct2	chr10	protein_coding	chaperonin containing Tcp1, subunit 2 (beta)
known_NIR_1283	chr10	116920504	116920937	-	116917018	116920937	A3SS	ENSMUST00000020381.5	known	0.75	3	1	3	1	n	0.00	0	5	0	5	n	0.07	1	14	1	14	n	0.27	3	8	3	8	y	0.50	8	8	8	8	y	0.00	0	13	0	13	n	0.25	3	9	3	9	y	0.11	2	17	2	17	y	0.33	4	8	4	8	y	0.17	1	5	1	5	n	0.11	1	8	1	8	n	0.33	4	8	4	8	y	ENSMUSG00000020170.5	Frs2	chr10	protein_coding	fibroblast growth factor receptor substrate 2
known_NIR_1284	chr10	117185372	117191840	-	117191757	117191840	3pMXE	ENSMUST00000175888.2	known	0.82	32	7	32	7	y	0.87	33	5	33	5	y	0.99	81	1	81	1	n	0.89	42	5	42	5	y	0.96	51	2	51	2	y	0.97	33	1	33	1	n	1.00	61	0	61	0	n	0.94	31	2	31	2	y	0.91	31	3	31	3	y	0.92	67	6	67	6	y	0.90	38	4	38	4	y	0.91	42	4	42	4	y	ENSMUSG00000055531.13	Cpsf6	chr10	protein_coding	cleavage and polyadenylation specific factor 6
known_NIR_1285	chr10	117185372;117191757	117191687;117191840	-	117185372	117191840	cassetteExon	ENSMUST00000069168.13	known	0.11	4.0	32	1;7	32	n	0.08	3.0	33	1;5	33	n	0.02	1.5	81	2;1	81	n	0.07	3.0	42	1;5	42	n	0.04	2.0	51	2;2	51	y	0.01	0.5	33	0;1	33	n	0.01	0.5	61	1;0	61	n	0.05	1.5	31	1;2	31	n	0.05	1.5	31	0;3	31	n	0.06	4.5	67	3;6	67	y	0.05	2.0	38	0;4	38	n	0.05	2.0	42	0;4	42	n	ENSMUSG00000055531.13	Cpsf6	chr10	protein_coding	cleavage and polyadenylation specific factor 6
known_NIR_1286	chr10	117185406	117191840	-	117185372	117191840	A3SS	ENSMUST00000069168.13	known	0.00	0	32	0	32	n	0.00	0	33	0	33	n	0.04	3	81	3	81	y	0.09	4	42	4	42	y	0.07	4	51	4	51	y	0.00	0	33	0	33	n	0.00	0	61	0	61	n	0.03	1	31	1	31	n	0.00	0	31	0	31	n	0.00	0	67	0	67	n	0.00	0	38	0	38	n	0.09	4	42	4	42	y	ENSMUSG00000055531.13	Cpsf6	chr10	protein_coding	cleavage and polyadenylation specific factor 6
known_NIR_1287	chr10	117192032	117194898	-	117192029	117194898	A3SS	ENSMUST00000069168.13	known	0.25	12	36	12	36	y	0.18	6	27	6	27	y	0.35	34	63	34	63	y	0.39	18	28	18	28	y	0.32	21	45	21	45	y	0.40	12	18	12	18	y	0.31	14	31	14	31	y	0.31	11	25	11	25	y	0.24	10	32	10	32	y	0.28	13	34	13	34	y	0.23	8	27	8	27	y	0.51	21	20	21	20	y	ENSMUSG00000055531.13	Cpsf6	chr10	protein_coding	cleavage and polyadenylation specific factor 6
known_NIR_1288	chr10	117197265;117197789	117197679;117197919	-	117197265	117197919	cassetteExon	ENSMUST00000069168.13	known	0.17	2.5	12	1;4	12	n	0.21	4.0	15	4;4	15	y	0.20	6.0	24	5;7	24	y	0.29	6.5	16	3;10	16	y	0.24	7.5	24	6;9	24	y	0.20	4.5	18	3;6	18	y	0.27	9.0	24	10;8	24	y	0.23	7.0	24	5;9	24	y	0.19	3.5	15	4;3	15	y	0.31	9.0	20	9;9	20	y	0.14	2.0	12	2;2	12	y	0.15	5.5	30	5;6	30	y	ENSMUSG00000055531.13	Cpsf6	chr10	protein_coding	cleavage and polyadenylation specific factor 6
known_NIR_1289	chr10	117530973	117532286	-	117530973;117531954	117531858;117532286	ES	ENSMUST00000020408.16	known	0.00	0	45.5	0	48;43	n	0.00	0	29.5	0	27;32	n	0.00	0	63.5	0	64;63	n	0.00	0	49.0	0	56;42	n	0.00	0	58.5	0	56;61	n	0.00	0	35.0	0	35;35	n	0.02	1	39.5	1	44;35	n	0.00	0	36.5	0	37;36	n	0.04	1	25.5	1	29;22	n	0.02	1	48.0	1	55;41	n	0.00	0	30.5	0	28;33	n	0.05	2	41.5	2	32;51	y	ENSMUSG00000020184.16	Mdm2	chr10	protein_coding	transformed mouse 3T3 cell double minute 2
known_NIR_1290	chr10	117530973	117532286	-	117531954	117532286	3pMXE	ENSMUST00000126022.8	known	0.00	0	43	0	43	n	0.00	0	32	0	32	n	0.00	0	63	0	63	n	0.00	0	42	0	42	n	0.00	0	61	0	61	n	0.00	0	35	0	35	n	0.03	1	35	1	35	n	0.00	0	36	0	36	n	0.04	1	22	1	22	n	0.02	1	41	1	41	n	0.00	0	33	0	33	n	0.04	2	51	2	51	y	ENSMUSG00000020184.16	Mdm2	chr10	protein_coding	transformed mouse 3T3 cell double minute 2
known_NIR_1291	chr10	117541134	117545559	-	117541134	117545605	A5SS	ENSMUST00000020408.16	known	0.00	0	28	0	28	n	0.07	2	28	2	28	y	0.00	0	35	0	35	n	0.03	1	30	1	30	n	0.02	1	42	1	42	n	0.00	0	15	0	15	n	0.00	0	32	0	32	n	0.00	0	28	0	28	n	0.03	1	28	1	28	n	0.00	0	26	0	26	n	0.00	0	17	0	17	n	0.00	0	28	0	28	n	ENSMUSG00000020184.16	Mdm2	chr10	protein_coding	transformed mouse 3T3 cell double minute 2
known_NIR_1292	chr10	117541134	117545851	-	117541134;117545689	117545559;117545851	ES	ENSMUST00000105263.9	known	0.12	2	14.0	2	0;28	n	0.25	4	12.0	4	2;22	y	0.12	3	22.0	3	0;44	n	0.11	2	17.0	2	1;33	n	0.09	2	21.5	2	1;42	n	0.11	1	8.0	1	0;16	n	0.16	3	15.5	3	0;31	n	0.06	1	14.5	1	0;29	n	0.00	0	12.5	0	1;24	n	0.00	0	21.5	0	0;43	n	0.00	0	14.5	0	0;29	n	0.16	3	16.0	3	0;32	n	ENSMUSG00000020184.16	Mdm2	chr10	protein_coding	transformed mouse 3T3 cell double minute 2
known_NIR_1293	chr10	117541134	117545851	-	117541134;117545689	117545605;117545851	ES	ENSMUST00000020408.16	known	0.07	2	28.0	2	28;28	y	0.14	4	25.0	4	28;22	y	0.07	3	39.5	3	35;44	y	0.06	2	31.5	2	30;33	y	0.05	2	42.0	2	42;42	y	0.06	1	15.5	1	15;16	n	0.09	3	31.5	3	32;31	y	0.03	1	28.5	1	28;29	n	0.00	0	26.0	0	28;24	n	0.00	0	34.5	0	26;43	n	0.00	0	23.0	0	17;29	n	0.09	3	30.0	3	28;32	y	ENSMUSG00000020184.16	Mdm2	chr10	protein_coding	transformed mouse 3T3 cell double minute 2
known_NIR_1294	chr10	119982534	120000946	-	119982534	120000998	A5SS	ENSMUST00000020448.11	known	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.04	2	48	2	48	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.00	0	18	0	18	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020227.11	Irak3	chr10	protein_coding	interleukin-1 receptor-associated kinase 3
known_NIR_1295	chr10	120038612	120038853	+	120038100	120038853	A5SS	ENSMUST00000156247.2	known	0.50	2	2	2	2	n	0.67	2	1	2	1	n	0.43	10	13	10	13	y	0.33	1	2	1	2	n	0.40	4	6	4	6	y	0.67	8	4	8	4	y	0.38	3	5	3	5	n	0.77	10	3	10	3	y	-	-	-	-	-	-	0.50	3	3	3	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020225.11	Tmbim4	chr10	protein_coding	transmembrane BAX inhibitor motif containing 4
known_NIR_1296	chr10	120051554	120056656	+	120051554	120053409	3pMXE	ENSMUST00000156877.8	known	0.00	0	329	0	329	n	0.01	3	369	3	369	y	0.00	0	468	0	468	n	0.00	0	371	0	371	n	0.01	4	478	4	478	y	0.01	3	311	3	311	y	0.01	3	478	3	478	y	0.00	0	266	0	266	n	0.02	7	326	7	326	y	0.01	3	583	3	583	y	0.01	3	390	3	390	y	0.01	3	428	3	428	y	ENSMUSG00000020225.11	Tmbim4	chr10	protein_coding	transmembrane BAX inhibitor motif containing 4
known_NIR_1297	chr10	120051554	120056656	+	120051554;120053514	120053409;120056656	ES	ENSMUST00000020446.11	known	0.00	0	349.5	0	329;370	n	0.01	3	386.0	3	369;403	y	0.00	0	477.0	0	468;486	n	0.00	0	414.0	0	371;457	n	0.01	4	470.0	4	478;462	y	0.01	3	306.0	3	311;301	y	0.01	3	508.0	3	478;538	y	0.00	0	281.0	0	266;296	n	0.02	7	353.5	7	326;381	y	0.01	3	563.5	3	583;544	y	0.01	3	403.5	3	390;417	y	0.01	3	459.5	3	428;491	y	ENSMUSG00000020225.11	Tmbim4	chr10	protein_coding	transmembrane BAX inhibitor motif containing 4
known_NIR_1298	chr10	120063454	120063879	+	120063028	120063879	A5SS	ENSMUST00000020444.16	known	0.07	5	68	5	68	y	0.07	6	86	6	86	y	0.07	7	91	7	91	y	0.03	3	86	3	86	y	0.03	3	110	3	110	y	0.00	0	59	0	59	n	0.04	4	103	4	103	y	0.06	3	51	3	51	y	0.05	5	93	5	93	y	0.07	8	115	8	115	y	0.04	5	110	5	110	y	0.08	9	98	9	98	y	ENSMUSG00000020224.16	Llph	chr10	protein_coding	LLP homolog, long-term synaptic facilitation (Aplysia)
known_NIR_1299	chr10	120064108;120066467	120066315;120067108	+	120064108	120067108	cassetteExon	ENSMUST00000020444.16	known	0.01	2.0	233	2;2	233	y	0.01	3.0	273	5;1	273	n	0.00	0.5	276	1;0	276	n	0.00	0.0	231	0;0	231	n	0.00	1.0	281	2;0	281	n	0.00	0.5	155	1;0	155	n	0.01	2.5	280	4;1	280	n	0.01	1.0	137	2;0	137	n	0.01	2.5	217	4;1	217	n	0.00	1.0	311	1;1	311	n	0.00	0.0	272	0;0	272	n	0.00	1.0	281	0;2	281	n	ENSMUSG00000020224.16	Llph	chr10	protein_coding	LLP homolog, long-term synaptic facilitation (Aplysia)
known_NIR_1300	chr10	121201263;121206323	121206202;121207049	+	121201263	121207049	cassetteExon	ENSMUST00000040344.7	known	0.01	0.5	84	0;1	84	n	0.02	1.0	65	0;2	65	n	0.03	5.0	154	4;6	154	y	0.01	2.5	186	1;4	186	n	0.03	4.5	174	4;5	174	y	0.02	1.5	86	0;3	86	n	0.02	2.5	106	2;3	106	y	0.00	0.0	103	0;0	103	n	0.01	0.5	85	0;1	85	n	0.02	3.0	166	0;6	166	n	0.00	0.0	111	0;0	111	n	0.01	1.0	172	0;2	172	n	ENSMUSG00000034707.8	Gns	chr10	protein_coding	glucosamine (N-acetyl)-6-sulfatase
known_NIR_1301	chr10	121207108	121210295	+	121207108	121210263	A3SS	ENSMUST00000040344.7	known	0.01	1	109	1	109	n	0.04	3	73	3	73	y	0.01	1	158	1	158	n	0.00	0	193	0	193	n	0.00	0	217	0	217	n	0.00	0	101	0	101	n	0.01	2	161	2	161	y	0.01	1	114	1	114	n	0.00	0	85	0	85	n	0.00	0	215	0	215	n	0.02	2	126	2	126	y	0.00	0	186	0	186	n	ENSMUSG00000034707.8	Gns	chr10	protein_coding	glucosamine (N-acetyl)-6-sulfatase
known_NIR_1302	chr10	121212639	121214000	+	121212639	121213927	A3SS	ENSMUST00000040344.7	known	0.02	3	178	3	178	y	0.03	5	141	5	141	y	0.03	6	221	6	221	y	0.02	6	294	6	294	y	0.03	8	276	8	276	y	0.03	5	163	5	163	y	0.01	3	259	3	259	y	0.00	0	186	0	186	n	0.00	1	206	1	206	n	0.02	7	300	7	300	y	0.00	0	225	0	225	n	0.00	0	301	0	301	n	ENSMUSG00000034707.8	Gns	chr10	protein_coding	glucosamine (N-acetyl)-6-sulfatase
known_NIR_1303	chr10	121216105	121216946	+	121216105	121217078	A3SS	ENSMUST00000040344.7	known	0.01	1	165	1	165	n	0.03	4	121	4	121	y	0.01	3	206	3	206	y	0.00	0	239	0	239	n	0.00	0	310	0	310	n	0.00	0	138	0	138	n	0.02	5	263	5	263	y	0.00	0	192	0	192	n	0.01	1	173	1	173	n	0.01	2	272	2	272	y	0.01	2	194	2	194	y	0.02	5	250	5	250	y	ENSMUSG00000034707.8	Gns	chr10	protein_coding	glucosamine (N-acetyl)-6-sulfatase
known_NIR_1304	chr10	121346530	121358702	+	121346530	121361539	A3SS	ENSMUST00000220364.2	known	1.00	5	0	5	0	n	1.00	9	0	9	0	n	0.95	41	2	41	2	y	0.94	30	2	30	2	y	1.00	14	0	14	0	n	1.00	15	0	15	0	n	1.00	31	0	31	0	n	1.00	21	0	21	0	n	1.00	21	0	21	0	n	1.00	27	0	27	0	n	1.00	19	0	19	0	n	1.00	30	0	30	0	n	ENSMUSG00000112527.2	Gm35696	chr10	lncRNA	predicted gene, 35696
known_NIR_1305	chr10	121388197	121388313	-	121388201	121388313	A3SS	ENSMUST00000020316.4	known	0.00	0	58	0	58	n	0.00	0	59	0	59	n	0.03	3	102	3	102	y	0.00	0	66	0	66	n	0.00	0	92	0	92	n	0.02	1	43	1	43	n	0.00	0	95	0	95	n	0.02	1	45	1	45	n	0.00	0	48	0	48	n	0.00	0	70	0	70	n	0.00	0	63	0	63	n	0.03	2	65	2	65	y	ENSMUSG00000020115.4	Tbk1	chr10	protein_coding	TANK-binding kinase 1
known_NIR_1306	chr10	121407929	121412183	-	121407929	121412179	A5SS	ENSMUST00000020316.4	known	0.00	0	25	0	25	n	0.00	0	16	0	16	n	0.00	0	43	0	43	n	0.00	0	38	0	38	n	0.00	0	54	0	54	n	0.03	1	30	1	30	n	0.04	2	44	2	44	y	0.00	0	24	0	24	n	0.04	1	27	1	27	n	0.00	0	61	0	61	n	0.00	0	20	0	20	n	0.00	0	29	0	29	n	ENSMUSG00000020115.4	Tbk1	chr10	protein_coding	TANK-binding kinase 1
known_NIR_1307	chr10	121429628	121435492	-	121429628;121432160	121432089;121435492	ES	ENSMUST00000039810.8	known	0.00	0	98.5	0	112;85	n	0.00	0	96.0	0	110;82	n	0.00	0	147.0	0	174;120	n	0.02	2	114.5	2	125;104	y	0.00	0	147.5	0	167;128	n	0.00	0	62.0	0	65;59	n	0.00	0	146.0	0	162;130	n	0.00	0	80.5	0	85;76	n	0.00	0	85.0	0	98;72	n	0.01	2	133.0	2	140;126	y	0.00	0	109.5	0	120;99	n	0.01	1	114.0	1	116;112	n	ENSMUSG00000034667.9	Xpot	chr10	protein_coding	exportin, tRNA (nuclear export receptor for tRNAs)
known_NIR_1308	chr10	121576115	121581403	+	121576115	121581236	A3SS	ENSMUST00000065600.8	known	0.22	2	7	2	7	n	1.00	3	0	3	0	n	0.18	2	9	2	9	y	0.29	2	5	2	5	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.27	3	8	3	8	y	0.15	2	11	2	11	y	0.14	1	6	1	6	n	0.00	0	9	0	9	n	1.00	2	0	2	0	n	0.40	2	3	2	3	n	ENSMUSG00000053684.9	BC048403	chr10	protein_coding	cDNA sequence BC048403
known_NIR_1309	chr10	121932132	121932805	-	121931999	121932805	A3SS	ENSMUST00000140299.3	known	0.02	1	43	1	43	n	0.00	0	39	0	39	n	0.03	2	74	2	74	y	0.04	2	48	2	48	y	0.03	2	68	2	68	y	0.00	0	27	0	27	n	0.00	0	61	0	61	n	0.00	0	42	0	42	n	0.00	0	36	0	36	n	0.02	1	62	1	62	n	0.00	0	37	0	37	n	0.00	0	52	0	52	n	ENSMUSG00000034620.18	Rxylt1	chr10	protein_coding	ribitol xylosyltransferase 1
known_NIR_1310	chr10	122845536	122846399	-	122845536;122845835	122845818;122846399	ES	ENSMUST00000073792.11	known	0.71	54	22.0	54	22;22	y	0.85	61	11.0	61	11;11	y	0.71	81	33.5	81	30;37	y	0.78	70	20.0	70	20;20	y	0.66	75	38.5	75	36;41	y	0.73	61	22.0	61	21;23	y	0.78	96	26.5	96	27;26	y	0.78	50	14.0	50	13;15	y	0.88	46	6.0	46	8;4	y	0.84	95	18.0	95	17;19	y	0.85	54	9.5	54	9;10	y	0.78	95	26.5	95	25;28	y	ENSMUSG00000034602.16	Mon2	chr10	protein_coding	MON2 homolog, regulator of endosome to Golgi trafficking
known_NIR_1311	chr10	122867029	122868428	-	122867026	122868428	A3SS	ENSMUST00000073792.11	known	0.23	6	20	6	20	y	0.23	5	17	5	17	y	0.25	14	43	14	43	y	0.14	8	50	8	50	y	0.15	11	63	11	63	y	0.23	11	37	11	37	y	0.33	14	28	14	28	y	0.19	8	34	8	34	y	0.11	3	24	3	24	y	0.21	13	49	13	49	y	0.17	5	25	5	25	y	0.24	12	39	12	39	y	ENSMUSG00000034602.16	Mon2	chr10	protein_coding	MON2 homolog, regulator of endosome to Golgi trafficking
known_NIR_1312	chr10	122982843	122999498	-	122982843;122989032	122988946;122999498	ES	ENSMUST00000220377.2	known	0.57	14	10.5	14	15;6	y	0.48	6	6.5	6	8;5	y	0.61	25	16.0	25	15;17	y	0.61	23	15.0	23	23;7	y	0.55	24	20.0	24	25;15	y	0.33	9	18.5	9	24;13	y	0.61	31	19.5	31	23;16	y	0.56	12	9.5	12	12;7	y	0.59	13	9.0	13	11;7	y	0.55	18	14.5	18	14;15	y	0.60	12	8.0	12	11;5	y	0.41	14	20.5	14	26;15	y	ENSMUSG00000020124.11	Usp15	chr10	protein_coding	ubiquitin specific peptidase 15
known_NIR_1313	chr10	122982843	122999498	-	122989032	122999498	3pMXE	ENSMUST00000220284.2	known	0.70	14	6	14	6	y	0.55	6	5	6	5	y	0.60	25	17	25	17	y	0.77	23	7	23	7	y	0.62	24	15	24	15	y	0.41	9	13	9	13	y	0.66	31	16	31	16	y	0.63	12	7	12	7	y	0.65	13	7	13	7	y	0.55	18	15	18	15	y	0.71	12	5	12	5	y	0.48	14	15	14	15	y	ENSMUSG00000020124.11	Usp15	chr10	protein_coding	ubiquitin specific peptidase 15
known_NIR_1314	chr10	122982843;122989032	122988946;123004132	-	122982843;122999559	122999498;123004132	MXE	ENSMUST00000020334.9	known	0.31	7.5	17.0	15;0	14;20	n	0.28	4.0	10.5	8;0	6;15	n	0.19	7.5	31.5	15;0	25;38	n	0.29	11.5	28.0	23;0	23;33	n	0.26	13.0	36.5	25;1	24;49	n	0.40	13.5	20.0	24;3	9;31	y	0.27	11.5	31.5	23;0	31;32	n	0.24	6.0	19.0	12;0	12;26	n	0.27	5.5	15.0	11;0	13;17	n	0.18	7.0	32.0	14;0	18;46	n	0.26	5.5	16.0	11;0	12;20	n	0.34	13.0	25.0	26;0	14;36	n	ENSMUSG00000020124.11	Usp15	chr10	protein_coding	ubiquitin specific peptidase 15
known_NIR_1315	chr10	122989032	123004132	-	122989032;122999559	122999498;123004132	ES	ENSMUST00000220377.2	known	0.00	0	13.0	0	6;20	n	0.00	0	10.0	0	5;15	n	0.00	0	27.5	0	17;38	n	0.00	0	20.0	0	7;33	n	0.03	1	32.0	1	15;49	n	0.12	3	22.0	3	13;31	y	0.00	0	24.0	0	16;32	n	0.00	0	16.5	0	7;26	n	0.00	0	12.0	0	7;17	n	0.00	0	30.5	0	15;46	n	0.00	0	12.5	0	5;20	n	0.00	0	25.5	0	15;36	n	ENSMUSG00000020124.11	Usp15	chr10	protein_coding	ubiquitin specific peptidase 15
known_NIR_1316	chr10	122989032	123004132	-	122999559	123004132	3pMXE	ENSMUST00000219010.2	known	0.00	0	20	0	20	n	0.00	0	15	0	15	n	0.00	0	38	0	38	n	0.00	0	33	0	33	n	0.02	1	49	1	49	n	0.09	3	31	3	31	y	0.00	0	32	0	32	n	0.00	0	26	0	26	n	0.00	0	17	0	17	n	0.00	0	46	0	46	n	0.00	0	20	0	20	n	0.00	0	36	0	36	n	ENSMUSG00000020124.11	Usp15	chr10	protein_coding	ubiquitin specific peptidase 15
known_NIR_1317	chr10	12413957	12490235	-	12413957	12496935	A5SS	ENSMUST00000076817.5	known	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	24	0	24	n	0.00	0	26	0	26	n	0.00	0	32	0	32	n	0.00	0	11	0	11	n	0.00	0	19	0	19	n	0.00	0	30	0	30	n	0.00	0	14	0	14	n	0.00	0	19	0	19	n	0.00	0	10	0	10	n	0.09	2	20	2	20	y	ENSMUSG00000019820.12	Utrn	chr10	protein_coding	utrophin
known_NIR_1318	chr10	125130713;125134571	125134491;125137826	-	125130713	125137826	cassetteExon	ENSMUST00000211781.2	known	0.05	2.0	41	2;2	41	y	0.06	2.0	33	1;3	33	n	0.09	2.0	21	4;0	21	n	0.02	1.0	41	0;2	41	n	0.02	1.0	48	1;1	48	n	0.00	0.0	16	0;0	16	n	0.00	0.0	48	0;0	48	n	0.04	1.5	40	2;1	40	n	0.00	0.0	46	0;0	46	n	0.02	1.0	64	0;2	64	n	0.03	1.0	28	1;1	28	n	0.02	1.0	55	0;2	55	n	ENSMUSG00000020102.16	Slc16a7	chr10	protein_coding	solute carrier family 16 (monocarboxylic acid transporters), member 7
known_NIR_1319	chr10	125137950	125175008	-	125137950	125164204	5pMXE	ENSMUST00000211781.2	known	0.00	0	21	0	21	n	0.00	0	13	0	13	n	0.07	1	13	1	13	n	0.00	0	28	0	28	n	0.00	0	29	0	29	n	0.08	1	12	1	12	n	0.00	0	31	0	31	n	0.10	3	26	3	26	y	0.07	2	26	2	26	y	0.00	0	48	0	48	n	0.00	0	15	0	15	n	0.00	0	42	0	42	n	ENSMUSG00000020102.16	Slc16a7	chr10	protein_coding	solute carrier family 16 (monocarboxylic acid transporters), member 7
known_NIR_1320	chr10	126723563	126727509	-	126704594	126727509	A3SS	ENSMUST00000026504.13	known	0.63	12	7	12	7	y	0.58	7	5	7	5	y	0.80	8	2	8	2	y	0.85	17	3	17	3	y	1.00	22	0	22	0	n	1.00	3	0	3	0	n	0.58	15	11	15	11	y	1.00	5	0	5	0	n	0.67	12	6	12	6	y	0.67	16	8	16	8	y	0.56	14	11	14	11	y	0.84	31	6	31	6	y	ENSMUSG00000025436.13	Atp23	chr10	protein_coding	ATP23 metallopeptidase and ATP synthase assembly factor homolog
known_NIR_1321	chr10	126726700	126727509	-	126723563	126727509	A3SS	ENSMUST00000168520.3	known	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	17	0	17	n	0.00	0	22	0	22	n	0.00	0	3	0	3	n	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.14	2	12	2	12	y	0.00	0	16	0	16	n	0.00	0	14	0	14	n	0.00	0	31	0	31	n	ENSMUSG00000025436.13	Atp23	chr10	protein_coding	ATP23 metallopeptidase and ATP synthase assembly factor homolog
known_NIR_1322	chr10	126877939	126878929	+	126877590	126878929	A5SS	ENSMUST00000152960.2	known	1.00	42	0	42	0	n	1.00	39	0	39	0	n	0.97	74	2	74	2	y	1.00	43	0	43	0	n	0.98	64	1	64	1	n	1.00	38	0	38	0	n	0.95	40	2	40	2	y	0.93	43	3	43	3	y	1.00	22	0	22	0	n	1.00	44	0	44	0	n	1.00	44	0	44	0	n	1.00	35	0	35	0	n	ENSMUSG00000006732.15	Mettl1	chr10	protein_coding	methyltransferase like 1
known_NIR_1323	chr10	126880738	126880866	+	126880738	126880895	A3SS	ENSMUST00000006915.14	known	0.05	2	41	2	41	y	0.05	3	58	3	58	y	0.09	11	107	11	107	y	0.00	0	39	0	39	n	0.04	4	96	4	96	y	0.09	6	63	6	63	y	0.15	9	53	9	53	y	0.07	4	54	4	54	y	0.03	1	36	1	36	n	0.09	5	49	5	49	y	0.05	3	60	3	60	y	0.04	2	43	2	43	y	ENSMUSG00000006732.15	Mettl1	chr10	protein_coding	methyltransferase like 1
known_NIR_1324	chr10	126899628	126900071	+	126899628	126900089	A3SS	ENSMUST00000006911.12	known	0.00	0	91	0	91	n	0.00	0	92	0	92	n	0.00	0	127	0	127	n	0.00	0	117	0	117	n	0.00	0	156	0	156	n	0.00	0	86	0	86	n	0.00	0	133	0	133	n	0.00	0	90	0	90	n	0.00	0	92	0	92	n	0.01	2	160	2	160	y	0.00	0	94	0	94	n	0.01	2	134	2	134	y	ENSMUSG00000006728.13	Cdk4	chr10	protein_coding	cyclin-dependent kinase 4
known_NIR_1325	chr10	126899628	126900454	+	126899628;126900322	126900071;126900454	ES	ENSMUST00000133115.8	known	0.02	1	56.0	1	0;112	n	0.00	0	49.0	0	0;98	n	0.02	2	79.0	2	0;158	n	0.00	0	49.0	0	0;98	n	0.00	0	83.0	0	0;166	n	0.00	0	36.5	0	0;73	n	0.02	1	56.5	1	0;113	n	0.00	0	45.0	0	0;90	n	0.04	2	45.5	2	0;91	n	0.04	3	66.0	3	2;130	y	0.00	0	69.5	0	0;139	n	0.05	3	62.0	3	2;122	y	ENSMUSG00000006728.13	Cdk4	chr10	protein_coding	cyclin-dependent kinase 4
known_NIR_1326	chr10	126899628	126900454	+	126899628;126900322	126900089;126900454	ES	ENSMUST00000006911.12	known	0.01	1	101.5	1	91;112	n	0.00	0	95.0	0	92;98	n	0.01	2	142.5	2	127;158	y	0.00	0	107.5	0	117;98	n	0.00	0	161.0	0	156;166	n	0.00	0	79.5	0	86;73	n	0.01	1	123.0	1	133;113	n	0.00	0	90.0	0	90;90	n	0.02	2	91.5	2	92;91	y	0.02	3	145.0	3	160;130	y	0.00	0	116.5	0	94;139	n	0.02	3	128.0	3	134;122	y	ENSMUSG00000006728.13	Cdk4	chr10	protein_coding	cyclin-dependent kinase 4
known_NIR_1327	chr10	126899628	126900454	+	126900322	126900454	5pMXE	ENSMUST00000125682.2	known	0.01	1	112	1	112	n	0.00	0	98	0	98	n	0.01	2	158	2	158	y	0.00	0	98	0	98	n	0.00	0	166	0	166	n	0.00	0	73	0	73	n	0.01	1	113	1	113	n	0.00	0	90	0	90	n	0.02	2	91	2	91	y	0.02	3	130	3	130	y	0.00	0	139	0	139	n	0.02	3	122	3	122	y	ENSMUSG00000006728.13	Cdk4	chr10	protein_coding	cyclin-dependent kinase 4
known_NIR_1328	chr10	126899628;126900322	126900071;126900704	+	126899628;126900589	126900454;126900704	MXE	ENSMUST00000135179.8	known	0.00	0.0	59.5	0;0	1;118	n	0.00	0.0	49.0	0;0	0;98	n	0.00	0.0	70.5	0;0	2;139	n	0.00	0.0	49.0	0;0	0;98	n	0.00	0.0	75.0	0;0	0;150	n	0.00	0.0	33.5	0;0	0;67	n	0.00	0.0	83.0	0;0	1;165	n	0.00	0.0	30.0	0;0	0;60	n	0.00	0.0	44.0	0;0	2;86	n	0.03	2.0	72.0	2;2	3;141	y	0.00	0.0	55.5	0;0	0;111	n	0.02	1.0	49.0	2;0	3;95	n	ENSMUSG00000006728.13	Cdk4	chr10	protein_coding	cyclin-dependent kinase 4
known_NIR_1329	chr10	126899628;126900589	126900454;126900704	+	126899628;126900322	126900089;126900704	MXE	ENSMUST00000142558.8	known	0.57	59.5	45.5	1;118	91;0	n	0.52	49.0	46.0	0;98	92;0	n	0.53	70.5	63.5	2;139	127;0	n	0.46	49.0	58.5	0;98	117;0	n	0.49	75.0	78.0	0;150	156;0	n	0.44	33.5	43.0	0;67	86;0	n	0.56	83.0	66.5	1;165	133;0	n	0.40	30.0	45.0	0;60	90;0	n	0.49	44.0	46.0	2;86	92;0	n	0.47	72.0	81.0	3;141	160;2	y	0.54	55.5	47.0	0;111	94;0	n	0.42	49.0	67.0	3;95	134;0	n	ENSMUSG00000006728.13	Cdk4	chr10	protein_coding	cyclin-dependent kinase 4
known_NIR_1330	chr10	126900322	126900704	+	126900322	126900454	A3SS&ES	ENSMUST00000120226.8	known	0.00	0	112	0	112	n	0.00	0	98	0	98	n	0.00	0	158	0	158	n	0.00	0	98	0	98	n	0.00	0	166	0	166	n	0.00	0	73	0	73	n	0.00	0	113	0	113	n	0.00	0	90	0	90	n	0.00	0	91	0	91	n	0.02	2	130	2	130	y	0.00	0	139	0	139	n	0.00	0	122	0	122	n	ENSMUSG00000006728.13	Cdk4	chr10	protein_coding	cyclin-dependent kinase 4
known_NIR_1331	chr10	126900322	126900704	+	126900322;126900589	126900454;126900704	ES	ENSMUST00000006911.12	known	0.00	0	115.0	0	112;118	n	0.00	0	98.0	0	98;98	n	0.00	0	148.5	0	158;139	n	0.00	0	98.0	0	98;98	n	0.00	0	158.0	0	166;150	n	0.00	0	70.0	0	73;67	n	0.00	0	139.0	0	113;165	n	0.00	0	75.0	0	90;60	n	0.00	0	88.5	0	91;86	n	0.01	2	135.5	2	130;141	y	0.00	0	125.0	0	139;111	n	0.00	0	108.5	0	122;95	n	ENSMUSG00000006728.13	Cdk4	chr10	protein_coding	cyclin-dependent kinase 4
known_NIR_1332	chr10	126900322	126900704	+	126900589	126900704	A5SS	ENSMUST00000123456.2	known	0.00	0	118	0	118	n	0.00	0	98	0	98	n	0.00	0	139	0	139	n	0.00	0	98	0	98	n	0.00	0	150	0	150	n	0.00	0	67	0	67	n	0.00	0	165	0	165	n	0.00	0	60	0	60	n	0.00	0	86	0	86	n	0.01	2	141	2	141	y	0.00	0	111	0	111	n	0.00	0	95	0	95	n	ENSMUSG00000006728.13	Cdk4	chr10	protein_coding	cyclin-dependent kinase 4
known_NIR_1333	chr10	126905320	126905984	-	126905382	126905984	A3SS	ENSMUST00000060991.6	known	0.00	0	437	0	437	n	0.00	0	397	0	397	n	0.01	3	571	3	571	y	0.00	0	610	0	610	n	0.00	0	773	0	773	n	0.00	0	454	0	454	n	0.00	0	675	0	675	n	0.00	0	480	0	480	n	0.00	0	390	0	390	n	0.00	0	689	0	689	n	0.00	0	484	0	484	n	0.00	0	541	0	541	n	ENSMUSG00000006736.10	Tspan31	chr10	protein_coding	tetraspanin 31
known_NIR_1334	chr10	126905382	126905676	-	126905382	126905984	A5SS	ENSMUST00000060991.6	known	0.00	1	437	1	437	n	0.01	2	397	2	397	y	0.00	0	571	0	571	n	0.00	0	610	0	610	n	0.00	0	773	0	773	n	0.00	1	454	1	454	n	0.01	5	675	5	675	y	0.00	2	480	2	480	y	0.00	0	390	0	390	n	0.00	2	689	2	689	y	0.00	2	484	2	484	y	0.00	0	541	0	541	n	ENSMUSG00000006736.10	Tspan31	chr10	protein_coding	tetraspanin 31
known_NIR_1335	chr10	126932611;126932948	126932784;126933801	-	126932611	126933801	cassetteExon	ENSMUST00000080975.6	known	0.42	274.5	372	274;275	372	y	0.44	270.0	338	279;261	338	y	0.39	265.5	418	252;279	418	y	0.47	290.0	331	278;302	331	y	0.44	381.0	491	374;388	491	y	0.39	172.5	268	165;180	268	y	0.41	303.0	443	302;304	443	y	0.44	250.5	318	246;255	318	y	0.45	256.5	311	263;250	311	y	0.42	310.0	425	304;316	425	y	0.49	306.0	314	316;296	314	y	0.43	323.5	427	335;312	427	y	ENSMUSG00000040462.14	Os9	chr10	protein_coding	amplified in osteosarcoma
known_NIR_1336	chr10	127003411	127005613	+	127003411	127003570	3pMXE	ENSMUST00000219523.2	known	0.01	4	277	4	277	y	0.00	0	284	0	284	n	0.01	2	297	2	297	y	0.00	0	228	0	228	n	0.01	5	413	5	413	y	0.00	0	216	0	216	n	0.00	1	305	1	305	n	0.01	3	229	3	229	y	0.04	8	181	8	181	y	0.01	3	287	3	287	y	0.02	4	179	4	179	y	0.01	3	250	3	250	y	ENSMUSG00000006731.11	B4galnt1	chr10	protein_coding	beta-1,4-N-acetyl-galactosaminyl transferase 1
known_NIR_1337	chr10	127003411	127005613	+	127003411;127003750	127003570;127005613	ES	ENSMUST00000006914.11	known	0.01	4	287.5	4	277;298	y	0.00	0	280.5	0	284;277	n	0.01	2	284.5	2	297;272	y	0.00	0	233.0	0	228;238	n	0.01	5	412.0	5	413;411	y	0.00	0	222.0	0	216;228	n	0.00	1	337.5	1	305;370	n	0.01	3	233.5	3	229;238	y	0.04	8	199.5	8	181;218	y	0.01	3	288.5	3	287;290	y	0.02	4	210.0	4	179;241	y	0.01	3	253.5	3	250;257	y	ENSMUSG00000006731.11	B4galnt1	chr10	protein_coding	beta-1,4-N-acetyl-galactosaminyl transferase 1
known_NIR_1338	chr10	127029207	127029599	-	127029226	127029599	A3SS	ENSMUST00000038217.14	known	0.17	1	5	1	5	n	0.25	2	6	2	6	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.14	2	12	2	12	y	0.00	0	3	0	3	n	0.09	1	10	1	10	n	0.00	0	11	0	11	n	0.20	1	4	1	4	n	0.00	0	8	0	8	n	0.10	1	9	1	9	n	0.00	0	7	0	7	n	ENSMUSG00000040415.16	Dtx3	chr10	protein_coding	deltex 3, E3 ubiquitin ligase
known_NIR_1339	chr10	127119031	127119261	-	127118957	127119261	A3SS	ENSMUST00000136169.8	known	0.26	30	85	30	85	y	0.18	16	74	16	74	y	0.32	51	106	51	106	y	0.31	28	63	28	63	y	0.30	37	87	37	87	y	0.22	17	61	17	61	y	0.26	32	90	32	90	y	0.37	26	45	26	45	y	0.27	18	48	18	48	y	0.28	26	67	26	67	y	0.32	24	51	24	51	y	0.37	37	63	37	63	y	ENSMUSG00000025409.15	Mbd6	chr10	protein_coding	methyl-CpG binding domain protein 6
known_NIR_1340	chr10	127119808	127119912	-	127119811	127119912	A3SS	ENSMUST00000126243.9	known	0.61	22	14	22	14	y	0.62	24	15	24	15	y	0.67	32	16	32	16	y	0.55	16	13	16	13	y	0.58	18	13	18	13	y	0.34	13	25	13	25	y	0.61	19	12	19	12	y	0.86	24	4	24	4	y	0.61	17	11	17	11	y	0.69	27	12	27	12	y	0.64	16	9	16	9	y	0.61	19	12	19	12	y	ENSMUSG00000025409.15	Mbd6	chr10	protein_coding	methyl-CpG binding domain protein 6
known_NIR_1341	chr10	127120084	127120204	-	127120081	127120204	A3SS	ENSMUST00000126243.9	known	0.34	18	35	18	35	y	0.44	21	27	21	27	y	0.44	36	45	36	45	y	0.48	20	22	20	22	y	0.43	22	29	22	29	y	0.36	13	23	13	23	y	0.43	22	29	22	29	y	0.67	26	13	26	13	y	0.56	22	17	22	17	y	0.45	26	32	26	32	y	0.53	24	21	24	21	y	0.60	33	22	33	22	y	ENSMUSG00000025409.15	Mbd6	chr10	protein_coding	methyl-CpG binding domain protein 6
known_NIR_1342	chr10	127126760	127131190	+	127126760	127129581	3pMXE	ENSMUST00000134686.2	known	0.00	0	37	0	37	n	0.00	0	19	0	19	n	0.06	3	46	3	46	y	0.09	2	21	2	21	y	0.00	0	48	0	48	n	0.07	2	26	2	26	y	0.07	2	28	2	28	y	0.00	0	29	0	29	n	0.06	1	16	1	16	n	0.00	0	29	0	29	n	0.12	5	36	5	36	y	0.00	0	22	0	22	n	ENSMUSG00000025408.16	Ddit3	chr10	protein_coding	DNA-damage inducible transcript 3
known_NIR_1343	chr10	127126760	127131190	+	127126760;127129628	127129581;127131190	ES	ENSMUST00000026475.15	known	0.00	0	34.5	0	37;32	n	0.00	0	20.0	0	19;21	n	0.06	3	45.5	3	46;45	y	0.09	2	20.0	2	21;19	y	0.00	0	48.5	0	48;49	n	0.07	2	27.0	2	26;28	y	0.06	2	32.5	2	28;37	y	0.00	0	33.0	0	29;37	n	0.06	1	15.0	1	16;14	n	0.00	0	31.5	0	29;34	n	0.11	5	42.5	5	36;49	y	0.00	0	23.5	0	22;25	n	ENSMUSG00000025408.16	Ddit3	chr10	protein_coding	DNA-damage inducible transcript 3
known_NIR_1344	chr10	127132502;127132609	127132586;127132742	-	127132502	127132742	cassetteExon	ENSMUST00000037290.12	known	0.12	19.5	138	22;17	138	y	0.07	12.0	158	13;11	158	y	0.04	8.5	201	8;9	201	y	0.05	5.5	114	6;5	114	y	0.08	13.5	165	15;12	165	y	0.03	2.5	79	5;0	79	n	0.16	30.5	158	31;30	158	y	0.05	3.0	63	3;3	63	y	0.16	20.5	111	22;19	111	y	0.13	22.5	156	25;20	156	y	0.20	37.5	149	40;35	149	y	0.15	23.0	133	24;22	133	y	ENSMUSG00000040354.15	Mars1	chr10	protein_coding	methionine-tRNA synthetase 1
known_NIR_1345	chr10	127164884	127165368	+	127164852	127165368	A5SS	ENSMUST00000219511.2	known	0.00	0	7	0	7	n	0.33	2	4	2	4	n	0.33	2	4	2	4	n	0.11	1	8	1	8	n	0.14	2	12	2	12	y	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.29	2	5	2	5	n	0.14	1	6	1	6	n	ENSMUSG00000040345.11	Arhgap9	chr10	protein_coding	Rho GTPase activating protein 9
known_NIR_1346	chr10	127216805	127226180	+	127216301	127226180	A5SS	ENSMUST00000170164.8	known	1.00	15	0	15	0	n	0.85	11	2	11	2	y	0.93	27	2	27	2	y	0.89	31	4	31	4	y	0.74	23	8	23	8	y	0.94	15	1	15	1	n	0.95	20	1	20	1	n	1.00	12	0	12	0	n	0.83	10	2	10	2	y	1.00	26	0	26	0	n	0.95	19	1	19	1	n	0.96	25	1	25	1	n	ENSMUSG00000025404.16	R3hdm2	chr10	protein_coding	R3H domain containing 2
known_NIR_1347	chr10	127295444	127298075	+	127295444	127298057	A3SS	ENSMUST00000166820.8	known	0.08	6	73	6	73	y	0.03	2	73	2	73	y	0.02	3	123	3	123	y	0.03	3	97	3	97	y	0.04	5	112	5	112	y	0.08	4	45	4	45	y	0.04	5	108	5	108	y	0.03	2	64	2	64	y	0.00	0	56	0	56	n	0.02	2	118	2	118	y	0.00	0	79	0	79	n	0.10	9	82	9	82	y	ENSMUSG00000025404.16	R3hdm2	chr10	protein_coding	R3H domain containing 2
known_NIR_1348	chr10	127295444	127300851	+	127295444;127298152	127298057;127300851	ES	ENSMUST00000166820.8	known	0.30	31	71.0	31	73;69	y	0.22	18	64.0	18	73;55	y	0.28	42	105.5	42	123;88	y	0.22	24	85.5	24	97;74	y	0.32	49	103.5	49	112;95	y	0.20	12	49.5	12	45;54	y	0.28	40	103.5	40	108;99	y	0.20	14	57.5	14	64;51	y	0.29	25	61.0	25	56;66	y	0.24	32	102.5	32	118;87	y	0.22	21	74.5	21	79;70	y	0.23	24	82.5	24	82;83	y	ENSMUSG00000025404.16	R3hdm2	chr10	protein_coding	R3H domain containing 2
known_NIR_1349	chr10	127295444;127298152	127298075;127300851	+	127295444	127300851	cassetteExon	ENSMUST00000064793.13	known	0.55	37.5	31	6;69	31	y	0.61	28.5	18	2;55	18	y	0.52	45.5	42	3;88	42	y	0.62	38.5	24	3;74	24	y	0.51	50.0	49	5;95	49	y	0.71	29.0	12	4;54	12	y	0.57	52.0	40	5;99	40	y	0.65	26.5	14	2;51	14	y	0.57	33.0	25	0;66	25	n	0.58	44.5	32	2;87	32	y	0.62	35.0	21	0;70	21	n	0.66	46.0	24	9;83	24	y	ENSMUSG00000025404.16	R3hdm2	chr10	protein_coding	R3H domain containing 2
known_NIR_1350	chr10	127300882	127307637	+	127300882	127301000	3pMXE	ENSMUST00000165440.8	known	0.97	105	3	105	3	y	0.93	84	6	84	6	y	0.95	137	7	137	7	y	0.94	107	7	107	7	y	0.95	147	7	147	7	y	0.96	71	3	71	3	y	0.91	131	13	131	13	y	0.94	63	4	63	4	y	0.96	99	4	99	4	y	0.96	135	5	135	5	y	0.97	96	3	96	3	y	0.94	103	7	103	7	y	ENSMUSG00000025404.16	R3hdm2	chr10	protein_coding	R3H domain containing 2
known_NIR_1351	chr10	127300882	127307637	+	127300882;127301053	127301000;127307637	ES	ENSMUST00000166820.8	known	0.98	105	2.5	105	3;2	y	0.97	84	3.0	84	6;0	n	0.96	137	5.5	137	7;4	y	0.95	107	6.0	107	7;5	y	0.97	147	4.5	147	7;2	y	0.95	71	3.5	71	3;4	y	0.93	131	10.5	131	13;8	y	0.95	63	3.0	63	4;2	y	0.97	99	3.5	99	4;3	y	0.97	135	3.5	135	5;2	y	0.97	96	3.0	96	3;3	y	0.94	103	6.0	103	7;5	y	ENSMUSG00000025404.16	R3hdm2	chr10	protein_coding	R3H domain containing 2
known_NIR_1352	chr10	127312567	127319845	+	127312567;127317663	127317562;127319845	ES	ENSMUST00000166820.8	known	0.93	77	5.5	77	5;6	y	0.90	60	7.0	60	8;6	y	0.94	117	7.5	117	4;11	y	0.92	69	6.0	69	5;7	y	0.95	99	5.5	99	5;6	y	0.91	58	6.0	58	8;4	y	0.86	102	16.0	102	16;16	y	0.90	73	8.5	73	10;7	y	0.91	63	6.0	63	4;8	y	0.93	116	8.5	116	9;8	y	0.93	61	4.5	61	5;4	y	0.94	91	6.0	91	7;5	y	ENSMUSG00000025404.16	R3hdm2	chr10	protein_coding	R3H domain containing 2
known_NIR_1353	chr10	127312567	127319845	+	127317663	127319845	5pMXE	ENSMUST00000164469.2	known	0.93	77	6	77	6	y	0.91	60	6	60	6	y	0.91	117	11	117	11	y	0.91	69	7	69	7	y	0.94	99	6	99	6	y	0.94	58	4	58	4	y	0.86	102	16	102	16	y	0.91	73	7	73	7	y	0.89	63	8	63	8	y	0.94	116	8	116	8	y	0.94	61	4	61	4	y	0.95	91	5	91	5	y	ENSMUSG00000025404.16	R3hdm2	chr10	protein_coding	R3H domain containing 2
known_NIR_1354	chr10	127318476	127319845	+	127312567	127319845	A5SS	ENSMUST00000164831.8	known	0.00	0	77	0	77	n	0.00	0	60	0	60	n	0.00	0	117	0	117	n	0.00	0	69	0	69	n	0.00	0	99	0	99	n	0.02	1	58	1	58	n	0.02	2	102	2	102	y	0.00	0	73	0	73	n	0.00	0	63	0	63	n	0.00	0	116	0	116	n	0.00	0	61	0	61	n	0.00	0	91	0	91	n	ENSMUSG00000025404.16	R3hdm2	chr10	protein_coding	R3H domain containing 2
known_NIR_1355	chr10	127323744	127328459	+	127323744	127328438	A3SS	ENSMUST00000166820.8	known	0.03	3	92	3	92	y	0.04	4	109	4	109	y	0.06	7	115	7	115	y	0.00	0	112	0	112	n	0.04	5	136	5	136	y	0.00	0	52	0	52	n	0.01	2	148	2	148	y	0.00	0	96	0	96	n	0.00	0	116	0	116	n	0.00	0	141	0	141	n	0.05	5	89	5	89	y	0.04	6	136	6	136	y	ENSMUSG00000025404.16	R3hdm2	chr10	protein_coding	R3H domain containing 2
known_NIR_1356	chr10	127337853	127338551	+	127337778	127338551	A5SS	ENSMUST00000160610.2	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.17	2	10	2	10	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040287.10	Stac3	chr10	protein_coding	SH3 and cysteine rich domain 3
known_NIR_1357	chr10	127356984	127358157	-	127356975	127358157	A3SS	ENSMUST00000219239.2	known	0.80	325	80	325	80	y	0.85	256	45	256	45	y	0.79	182	47	182	47	y	0.86	421	69	421	69	y	0.79	312	82	312	82	y	0.79	85	22	85	22	y	0.81	355	83	355	83	y	0.89	131	17	131	17	y	0.78	319	91	319	91	y	0.81	411	94	411	94	y	0.77	304	89	304	89	y	0.80	355	87	355	87	y	ENSMUSG00000025403.6	Shmt2	chr10	protein_coding	serine hydroxymethyltransferase 2 (mitochondrial)
known_NIR_1358	chr10	12737479	12743837	-	12737479	12744499	A5SS	ENSMUST00000218635.2	known	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.21	3	11	3	11	y	0.67	2	1	2	1	n	0.40	2	3	2	3	n	0.00	0	4	0	4	n	0.50	3	3	3	3	n	0.12	1	7	1	7	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.29	2	5	2	5	n	ENSMUSG00000019820.12	Utrn	chr10	protein_coding	utrophin
known_NIR_1359	chr10	127497648	127499001	-	127497648;127498791	127498600;127499001	ES	ENSMUST00000026469.9	known	0.20	6	24.5	6	25;24	y	0.29	10	24.5	10	21;28	y	0.31	15	33.0	15	32;34	y	0.29	10	24.5	10	21;28	y	0.32	24	50.5	24	45;56	y	0.06	1	16.0	1	15;17	n	0.38	15	25.0	15	25;25	y	0.35	9	17.0	9	18;16	y	0.26	12	33.5	12	26;41	y	0.41	14	20.5	14	14;27	y	0.03	1	29.0	1	33;25	n	0.21	17	63.0	17	61;65	y	ENSMUSG00000025402.13	Nab2	chr10	protein_coding	Ngfi-A binding protein 2
known_NIR_1360	chr10	127501007	127501165	-	127501007	127502245	A5SS	ENSMUST00000026469.9	known	0.00	0	13	0	13	n	0.00	0	28	0	28	n	0.05	2	40	2	40	y	0.00	0	21	0	21	n	0.00	0	49	0	49	n	0.00	0	20	0	20	n	0.00	0	17	0	17	n	0.00	0	14	0	14	n	0.00	0	35	0	35	n	0.00	0	26	0	26	n	0.00	0	22	0	22	n	0.00	0	47	0	47	n	ENSMUSG00000025402.13	Nab2	chr10	protein_coding	Ngfi-A binding protein 2
known_NIR_1361	chr10	127612666	127618035	+	127612666	127624477	A3SS	ENSMUST00000128133.2	known	0.11	6	48	6	48	y	0.06	2	31	2	31	y	0.15	2	11	2	11	y	0.10	7	63	7	63	y	0.09	13	129	13	129	y	0.06	2	34	2	34	y	0.11	15	127	15	127	y	0.10	5	44	5	44	y	0.00	0	58	0	58	n	0.09	9	90	9	90	y	0.17	7	34	7	34	y	0.00	0	53	0	53	n	ENSMUSG00000056148.9	Rdh9	chr10	protein_coding	retinol dehydrogenase 9
known_NIR_1362	chr10	127612666	127624477	+	127596119	127624477	A5SS	ENSMUST00000128247.2	known	1.00	48	0	48	0	n	1.00	31	0	31	0	n	1.00	11	0	11	0	n	1.00	63	0	63	0	n	1.00	129	0	129	0	n	1.00	34	0	34	0	n	0.96	127	5	127	5	y	1.00	44	0	44	0	n	1.00	58	0	58	0	n	0.98	90	2	90	2	y	1.00	34	0	34	0	n	1.00	53	0	53	0	n	ENSMUSG00000099009.2	Rdh16f1	chr10	protein_coding	RDH16 family member 1
known_NIR_1363	chr10	127637379;127647181	127646923;127648655	+	127637379	127648655	cassetteExon	ENSMUST00000155739.2	known	0.97	67.0	2	97;37	2	y	0.97	70.5	2	92;49	2	y	1.00	14.5	0	22;7	0	n	0.95	114.5	6	144;85	6	y	0.97	90.0	3	144;36	3	y	0.92	12.0	1	21;3	1	n	0.95	116.0	6	164;68	6	y	1.00	30.5	0	43;18	0	n	0.97	90.5	3	120;61	3	y	0.94	186.0	11	228;144	11	y	0.93	93.5	7	126;61	7	y	0.96	107.5	5	142;73	5	y	ENSMUSG00000069456.5	Rdh16	chr10	protein_coding	retinol dehydrogenase 16
known_NIR_1364	chr10	127739342	127739447	+	127738283	127739447	A5SS	ENSMUST00000047134.8	known	0.02	2	88	2	88	y	0.00	0	65	0	65	n	0.00	0	30	0	30	n	0.01	2	146	2	146	y	0.00	0	157	0	157	n	0.00	0	37	0	37	n	0.01	2	137	2	137	y	0.00	0	52	0	52	n	0.00	0	125	0	125	n	0.01	1	199	1	199	n	0.00	0	140	0	140	n	0.01	1	70	1	70	n	ENSMUSG00000040127.14	Sdr9c7	chr10	protein_coding	4short chain dehydrogenase/reductase family 9C, member 7
known_NIR_1365	chr10	127833893	127836420	-	127833893	127836431	A5SS	ENSMUST00000219447.2	known	0.13	17	114	17	114	y	0.09	21	206	21	206	y	0.15	3	17	3	17	y	0.18	24	110	24	110	y	0.14	43	260	43	260	y	0.18	6	28	6	28	y	0.15	45	247	45	247	y	0.15	24	137	24	137	y	0.13	27	183	27	183	y	0.10	31	273	31	273	y	0.16	41	213	41	213	y	0.11	51	399	51	399	y	ENSMUSG00000025396.8	Hsd17b6	chr10	protein_coding	hydroxysteroid (17-beta) dehydrogenase 6
known_NIR_1366	chr10	127836540	127843352	-	127836545	127843352	A3SS	ENSMUST00000219183.2	known	0.21	27	101	27	101	y	0.28	55	142	55	142	y	0.11	1	8	1	8	n	0.23	27	92	27	92	y	0.27	77	212	77	212	y	0.30	8	19	8	19	y	0.26	59	165	59	165	y	0.26	32	89	32	89	y	0.31	61	134	61	134	y	0.28	75	196	75	196	y	0.31	70	159	70	159	y	0.28	94	242	94	242	y	ENSMUSG00000025396.8	Hsd17b6	chr10	protein_coding	hydroxysteroid (17-beta) dehydrogenase 6
known_NIR_1367	chr10	127836545	127843352	-	127836545	127843314	A5SS	ENSMUST00000219447.2	known	1.00	101	0	101	0	n	1.00	142	0	142	0	n	1.00	8	0	8	0	n	1.00	92	0	92	0	n	0.96	212	9	212	9	y	0.86	19	3	19	3	y	0.95	165	9	165	9	y	0.92	89	8	89	8	y	0.99	134	2	134	2	y	0.98	196	4	196	4	y	0.95	159	8	159	8	y	0.97	242	7	242	7	y	ENSMUSG00000025396.8	Hsd17b6	chr10	protein_coding	hydroxysteroid (17-beta) dehydrogenase 6
known_NIR_1368	chr10	127872429	127875040	+	127872429	127882037	A3SS	ENSMUST00000073868.9	known	0.00	0	1145	0	1145	n	0.00	0	1083	0	1083	n	0.00	0	1005	0	1005	n	0.00	0	1166	0	1166	n	0.00	0	1274	0	1274	n	0.00	0	581	0	581	n	0.01	12	1299	12	1299	y	0.00	0	573	0	573	n	0.00	0	1003	0	1003	n	0.00	0	1488	0	1488	n	0.00	0	1267	0	1267	n	0.00	0	1457	0	1457	n	ENSMUSG00000061315.15	Naca	chr10	protein_coding	nascent polypeptide-associated complex alpha polypeptide
known_NIR_1369	chr10	127872429	127882037	+	127872429;127880955	127875040;127882037	ES	ENSMUST00000092048.13	known	1.00	1145	0.0	1145	0;0	n	1.00	1083	0.0	1083	0;0	n	1.00	1005	0.0	1005	0;0	n	1.00	1166	0.0	1166	0;0	n	1.00	1274	0.0	1274	0;0	n	1.00	581	0.0	581	0;0	n	0.98	1299	21.0	1299	12;30	y	1.00	573	0.0	573	0;0	n	1.00	1003	0.0	1003	0;0	n	1.00	1488	0.0	1488	0;0	n	1.00	1267	0.0	1267	0;0	n	1.00	1457	0.0	1457	0;0	n	ENSMUSG00000061315.15	Naca	chr10	protein_coding	nascent polypeptide-associated complex alpha polypeptide
known_NIR_1370	chr10	127880955	127882037	+	127872429	127882037	A5SS	ENSMUST00000073868.9	known	0.00	0	1145	0	1145	n	0.00	0	1083	0	1083	n	0.00	0	1005	0	1005	n	0.00	0	1166	0	1166	n	0.00	0	1274	0	1274	n	0.00	0	581	0	581	n	0.02	30	1299	30	1299	y	0.00	0	573	0	573	n	0.00	0	1003	0	1003	n	0.00	0	1488	0	1488	n	0.00	0	1267	0	1267	n	0.00	0	1457	0	1457	n	ENSMUSG00000061315.15	Naca	chr10	protein_coding	nascent polypeptide-associated complex alpha polypeptide
known_NIR_1371	chr10	127906101	127910091	+	127906101	127907937	3pMXE	ENSMUST00000148943.2	known	0.01	5	403	5	403	y	0.00	1	384	1	384	n	0.01	3	426	3	426	y	0.01	3	436	3	436	y	0.00	2	559	2	559	y	0.00	0	174	0	174	n	0.00	2	554	2	554	y	0.01	3	218	3	218	y	0.01	4	334	4	334	y	0.01	4	542	4	542	y	0.01	4	383	4	383	y	0.00	1	551	1	551	n	ENSMUSG00000071072.13	Ptges3	chr10	protein_coding	prostaglandin E synthase 3
known_NIR_1372	chr10	127906101	127910091	+	127906101;127908026	127907937;127910091	ES	ENSMUST00000052798.14	known	0.01	5	436.5	5	403;470	y	0.00	1	397.5	1	384;411	n	0.01	3	468.5	3	426;511	y	0.01	3	491.0	3	436;546	y	0.00	2	596.5	2	559;634	y	0.00	0	195.5	0	174;217	n	0.00	2	611.0	2	554;668	y	0.01	3	240.0	3	218;262	y	0.01	4	398.0	4	334;462	y	0.01	4	624.0	4	542;706	y	0.01	4	462.0	4	383;541	y	0.00	1	603.5	1	551;656	n	ENSMUSG00000071072.13	Ptges3	chr10	protein_coding	prostaglandin E synthase 3
known_NIR_1373	chr10	127925027	127925861	+	127925027	127925888	A3SS	ENSMUST00000026459.6	known	0.00	0	3085	0	3085	n	0.00	0	3273	0	3273	n	0.00	3	2681	3	2681	y	0.00	0	2832	0	2832	n	0.00	0	3582	0	3582	n	0.00	0	1608	0	1608	n	0.00	0	4250	0	4250	n	0.00	0	1670	0	1670	n	0.00	0	3037	0	3037	n	0.00	6	4237	6	4237	y	0.00	1	3905	1	3905	n	0.00	1	4331	1	4331	n	ENSMUSG00000025393.13	Atp5b	chr10	protein_coding	ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit
known_NIR_1374	chr10	127948636	127949329	+	127948636	127949332	A3SS	ENSMUST00000218772.2	known	0.33	3	6	3	6	n	0.50	4	4	4	4	n	0.21	4	15	4	15	y	0.47	7	8	7	8	y	0.46	13	15	13	15	y	0.17	1	5	1	5	n	0.50	4	4	4	4	n	0.33	3	6	3	6	n	0.37	11	19	11	19	y	0.53	9	8	9	8	y	0.38	5	8	5	8	y	0.21	5	19	5	19	y	ENSMUSG00000040054.18	Baz2a	chr10	protein_coding	bromodomain adjacent to zinc finger domain, 2A
known_NIR_1375	chr10	127970976	127973343	-	127970976;127971600	127971523;127973343	ES	ENSMUST00000238843.2	known	1.00	59	0.0	59	0;0	n	1.00	47	0.0	47	0;0	n	0.97	37	1.0	37	1;1	n	0.99	48	0.5	48	0;1	n	1.00	66	0.0	66	0;0	n	1.00	35	0.0	35	0;0	n	0.97	66	2.0	66	2;2	y	1.00	25	0.0	25	0;0	n	1.00	43	0.0	43	0;0	n	0.99	73	0.5	73	0;1	n	0.98	40	1.0	40	1;1	n	1.00	59	0.0	59	0;0	n	ENSMUSG00000040043.18	Rbms2	chr10	protein_coding	RNA binding motif, single stranded interacting protein 2
known_NIR_1376	chr10	127987224	128012219	-	127987224	128015662	A5SS	ENSMUST00000238843.2	known	0.95	18	1	18	1	n	1.00	21	0	21	0	n	1.00	36	0	36	0	n	1.00	25	0	25	0	n	0.98	49	1	49	1	n	0.90	18	2	18	2	y	1.00	37	0	37	0	n	1.00	25	0	25	0	n	1.00	15	0	15	0	n	1.00	40	0	40	0	n	1.00	22	0	22	0	n	1.00	42	0	42	0	n	ENSMUSG00000040043.18	Rbms2	chr10	protein_coding	RNA binding motif, single stranded interacting protein 2
known_NIR_1377	chr10	128030715	128035051	+	128030776	128035051	A5SS	ENSMUST00000044776.13	known	0.00	0	486	0	486	n	0.01	3	321	3	321	y	0.01	2	194	2	194	y	0.00	1	743	1	743	n	0.01	5	508	5	508	y	0.00	0	181	0	181	n	0.00	0	471	0	471	n	0.02	4	241	4	241	y	0.01	4	457	4	457	y	0.01	5	699	5	699	y	0.01	5	469	5	469	y	0.01	9	1265	9	1265	y	ENSMUSG00000044005.14	Gls2	chr10	protein_coding	glutaminase 2 (liver, mitochondrial)
known_NIR_1378	chr10	128030715	128035051	+	128031049	128035051	A5SS&ES	ENSMUST00000123291.2	known	-	-	-	-	-	-	0.60	3	2	3	2	n	0.50	2	2	2	2	n	0.50	1	1	1	1	n	0.71	5	2	5	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	4	0	4	0	n	0.80	4	1	4	1	n	0.62	5	3	5	3	n	1.00	5	0	5	0	n	0.69	9	4	9	4	y	ENSMUSG00000044005.14	Gls2	chr10	protein_coding	glutaminase 2 (liver, mitochondrial)
known_NIR_1379	chr10	128035627	128036013	+	128035627	128036042	A3SS	ENSMUST00000044776.13	known	0.03	18	500	18	500	y	0.03	9	349	9	349	y	0.01	2	198	2	198	y	0.02	14	688	14	688	y	0.03	15	488	15	488	y	0.03	6	190	6	190	y	0.03	14	438	14	438	y	0.04	12	257	12	257	y	0.03	13	446	13	446	y	0.02	16	722	16	722	y	0.03	15	524	15	524	y	0.02	20	1243	20	1243	y	ENSMUSG00000044005.14	Gls2	chr10	protein_coding	glutaminase 2 (liver, mitochondrial)
known_NIR_1380	chr10	128035627	128036755	+	128035627;128036171	128036042;128036755	ES	ENSMUST00000044776.13	known	0.00	2	480.5	2	500;461	y	0.01	2	344.0	2	349;339	y	0.00	0	196.0	0	198;194	n	0.00	2	681.5	2	688;675	y	0.00	1	495.5	1	488;503	n	0.00	0	190.0	0	190;190	n	0.00	0	416.0	0	438;394	n	0.00	0	262.5	0	257;268	n	0.00	0	450.5	0	446;455	n	0.00	2	713.0	2	722;704	y	0.01	3	522.5	3	524;521	y	0.00	6	1233.0	6	1243;1223	y	ENSMUSG00000044005.14	Gls2	chr10	protein_coding	glutaminase 2 (liver, mitochondrial)
known_NIR_1381	chr10	128035627;128036171	128036013;128036755	+	128035627	128036755	cassetteExon	ENSMUST00000143827.8	known	0.99	239.5	2	18;461	2	y	0.99	174.0	2	9;339	2	y	1.00	98.0	0	2;194	0	n	0.99	344.5	2	14;675	2	y	1.00	259.0	1	15;503	1	n	1.00	98.0	0	6;190	0	n	1.00	204.0	0	14;394	0	n	1.00	140.0	0	12;268	0	n	1.00	234.0	0	13;455	0	n	0.99	360.0	2	16;704	2	y	0.99	268.0	3	15;521	3	y	0.99	621.5	6	20;1223	6	y	ENSMUSG00000044005.14	Gls2	chr10	protein_coding	glutaminase 2 (liver, mitochondrial)
known_NIR_1382	chr10	128035627;128036171	128036013;128037075	+	128035627;128036834	128036755;128037075	MXE	ENSMUST00000143827.8	known	0.03	9.0	306.0	18;0	2;610	n	0.02	4.5	202.0	9;0	2;402	n	0.01	1.5	115.0	2;1	0;230	n	0.02	7.5	391.0	14;1	2;780	n	0.03	9.0	257.0	15;3	1;513	n	0.03	3.5	98.5	6;1	0;197	n	0.03	7.0	240.0	14;0	0;480	n	0.04	7.0	151.0	12;2	0;302	n	0.02	6.5	267.0	13;0	0;534	n	0.02	9.0	399.5	16;2	2;797	y	0.03	7.5	288.5	15;0	3;574	n	0.01	10.0	711.5	20;0	6;1417	n	ENSMUSG00000044005.14	Gls2	chr10	protein_coding	glutaminase 2 (liver, mitochondrial)
known_NIR_1383	chr10	128035627;128036171	128036042;128037075	+	128035627;128036834	128036755;128037075	MXE	ENSMUST00000143827.8	known	0.45	250.0	306.0	500;0	2;610	n	0.46	174.5	202.0	349;0	2;402	n	0.46	99.5	115.0	198;1	0;230	n	0.47	344.5	391.0	688;1	2;780	n	0.49	245.5	257.0	488;3	1;513	n	0.49	95.5	98.5	190;1	0;197	n	0.48	219.0	240.0	438;0	0;480	n	0.46	129.5	151.0	257;2	0;302	n	0.46	223.0	267.0	446;0	0;534	n	0.48	362.0	399.5	722;2	2;797	y	0.48	262.0	288.5	524;0	3;574	n	0.47	621.5	711.5	1243;0	6;1417	n	ENSMUSG00000044005.14	Gls2	chr10	protein_coding	glutaminase 2 (liver, mitochondrial)
known_NIR_1384	chr10	128036171	128037075	+	128036171;128036834	128036755;128037075	ES	ENSMUST00000044776.13	known	0.00	0	535.5	0	461;610	n	0.00	0	370.5	0	339;402	n	0.00	1	212.0	1	194;230	n	0.00	1	727.5	1	675;780	n	0.01	3	508.0	3	503;513	y	0.01	1	193.5	1	190;197	n	0.00	0	437.0	0	394;480	n	0.01	2	285.0	2	268;302	y	0.00	0	494.5	0	455;534	n	0.00	2	750.5	2	704;797	y	0.00	0	547.5	0	521;574	n	0.00	0	1320.0	0	1223;1417	n	ENSMUSG00000044005.14	Gls2	chr10	protein_coding	glutaminase 2 (liver, mitochondrial)
known_NIR_1385	chr10	128042872	128043170	+	128042872	128043167	A3SS	ENSMUST00000044776.13	known	0.01	11	786	11	786	y	0.03	19	643	19	643	y	0.02	5	263	5	263	y	0.03	23	878	23	878	y	0.01	9	606	9	606	y	0.03	7	268	7	268	y	0.00	0	630	0	630	n	0.01	4	276	4	276	y	0.03	20	681	20	681	y	0.02	18	972	18	972	y	0.03	21	789	21	789	y	0.03	47	1714	47	1714	y	ENSMUSG00000044005.14	Gls2	chr10	protein_coding	glutaminase 2 (liver, mitochondrial)
known_NIR_1386	chr10	128085979	128086157	+	128085979	128086154	A3SS	ENSMUST00000055539.11	known	0.05	1	18	1	18	n	0.08	1	11	1	11	n	0.08	1	12	1	12	n	0.07	1	14	1	14	n	0.20	1	4	1	4	n	0.25	2	6	2	6	n	0.00	0	10	0	10	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.33	5	10	5	10	y	0.36	4	7	4	7	y	0.11	2	16	2	16	y	ENSMUSG00000039994.16	Timeless	chr10	protein_coding	timeless circadian clock 1
known_NIR_1387	chr10	128087957	128088064	+	128087957	128088061	A3SS	ENSMUST00000055539.11	known	0.00	0	3	0	3	n	0.50	6	6	6	6	y	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.50	2	2	2	2	n	0.43	6	8	6	8	y	0.75	3	1	3	1	n	1.00	2	0	2	0	n	0.46	6	7	6	7	y	1.00	1	0	1	0	n	0.57	4	3	4	3	n	ENSMUSG00000039994.16	Timeless	chr10	protein_coding	timeless circadian clock 1
known_NIR_1388	chr10	128140258	128143934	+	128140362	128143934	A5SS	ENSMUST00000005825.8	known	0.15	5	29	5	29	y	0.00	0	12	0	12	n	0.15	4	23	4	23	y	0.00	0	13	0	13	n	0.03	1	38	1	38	n	0.06	1	15	1	15	n	0.06	1	16	1	16	n	0.13	2	13	2	13	y	0.05	1	18	1	18	n	0.12	3	21	3	21	y	0.19	3	13	3	13	y	0.07	2	28	2	28	y	ENSMUSG00000005682.10	Pan2	chr10	protein_coding	PAN2 poly(A) specific ribonuclease subunit
known_NIR_1389	chr10	128140362	128143988	+	128140362	128143934	A3SS	ENSMUST00000005825.8	known	0.06	2	29	2	29	y	0.00	0	12	0	12	n	0.00	0	23	0	23	n	0.00	0	13	0	13	n	0.00	0	38	0	38	n	0.00	0	15	0	15	n	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.00	0	18	0	18	n	0.00	0	21	0	21	n	0.00	0	13	0	13	n	0.00	0	28	0	28	n	ENSMUSG00000005682.10	Pan2	chr10	protein_coding	PAN2 poly(A) specific ribonuclease subunit
known_NIR_1390	chr10	128151105	128151383	+	128151105	128151356	A3SS	ENSMUST00000005825.8	known	0.48	15	16	15	16	y	0.54	20	17	20	17	y	0.77	41	12	41	12	y	0.71	20	8	20	8	y	0.71	42	17	42	17	y	0.68	23	11	23	11	y	0.78	38	11	38	11	y	0.68	26	12	26	12	y	0.59	13	9	13	9	y	0.65	22	12	22	12	y	0.68	17	8	17	8	y	0.67	26	13	26	13	y	ENSMUSG00000005682.10	Pan2	chr10	protein_coding	PAN2 poly(A) specific ribonuclease subunit
known_NIR_1391	chr10	128154234	128154814	+	128154211	128154814	A5SS	ENSMUST00000005825.8	known	0.00	0	51	0	51	n	0.00	0	37	0	37	n	0.03	2	57	2	57	y	0.00	0	33	0	33	n	0.00	0	56	0	56	n	0.00	0	26	0	26	n	0.07	3	41	3	41	y	0.07	3	40	3	40	y	0.06	2	34	2	34	y	0.00	0	56	0	56	n	0.03	1	39	1	39	n	0.02	1	51	1	51	n	ENSMUSG00000005682.10	Pan2	chr10	protein_coding	PAN2 poly(A) specific ribonuclease subunit
known_NIR_1392	chr10	128158399	128159199	+	128158644	128159199	A5SS	ENSMUST00000219037.2	known	0.12	23	175	23	175	y	0.11	29	236	29	236	y	0.09	22	214	22	214	y	0.12	26	185	26	185	y	0.10	29	265	29	265	y	0.08	14	163	14	163	y	0.13	36	242	36	242	y	0.10	15	137	15	137	y	0.05	11	190	11	190	y	0.08	26	287	26	287	y	0.08	19	228	19	228	y	0.08	21	241	21	241	y	ENSMUSG00000025381.4	Cnpy2	chr10	protein_coding	canopy FGF signaling regulator 2
known_NIR_1393	chr10	128158587	128159199	+	128158399	128159199	A5SS	ENSMUST00000026446.4	known	0.12	3	23	3	23	y	0.06	2	29	2	29	y	0.12	3	22	3	22	y	0.13	4	26	4	26	y	0.15	5	29	5	29	y	0.22	4	14	4	14	y	0.20	9	36	9	36	y	0.29	6	15	6	15	y	0.00	0	11	0	11	n	0.07	2	26	2	26	y	0.27	7	19	7	19	y	0.22	6	21	6	21	y	ENSMUSG00000025381.4	Cnpy2	chr10	protein_coding	canopy FGF signaling regulator 2
known_NIR_1394	chr10	128158587	128159199	+	128158644	128159199	A5SS	ENSMUST00000219037.2	known	0.02	3	175	3	175	y	0.01	2	236	2	236	y	0.01	3	214	3	214	y	0.02	4	185	4	185	y	0.02	5	265	5	265	y	0.02	4	163	4	163	y	0.04	9	242	9	242	y	0.04	6	137	6	137	y	0.00	0	190	0	190	n	0.01	2	287	2	287	y	0.03	7	228	7	228	y	0.02	6	241	6	241	y	ENSMUSG00000025381.4	Cnpy2	chr10	protein_coding	canopy FGF signaling regulator 2
known_NIR_1395	chr10	128158931	128159199	+	128158399	128159199	A5SS	ENSMUST00000026446.4	known	0.00	0	23	0	23	n	0.00	0	29	0	29	n	0.04	1	22	1	22	n	0.13	4	26	4	26	y	0.00	0	29	0	29	n	0.07	1	14	1	14	n	0.03	1	36	1	36	n	0.12	2	15	2	15	y	0.00	0	11	0	11	n	0.00	0	26	0	26	n	0.00	0	19	0	19	n	0.00	0	21	0	21	n	ENSMUSG00000025381.4	Cnpy2	chr10	protein_coding	canopy FGF signaling regulator 2
known_NIR_1396	chr10	128158931	128159199	+	128158644	128159199	A5SS	ENSMUST00000219037.2	known	0.00	0	175	0	175	n	0.00	0	236	0	236	n	0.00	1	214	1	214	n	0.02	4	185	4	185	y	0.00	0	265	0	265	n	0.01	1	163	1	163	n	0.00	1	242	1	242	n	0.01	2	137	2	137	y	0.00	0	190	0	190	n	0.00	0	287	0	287	n	0.00	0	228	0	228	n	0.00	0	241	0	241	n	ENSMUSG00000025381.4	Cnpy2	chr10	protein_coding	canopy FGF signaling regulator 2
known_NIR_1397	chr10	128201114	128203876	-	128201084	128203876	A3SS	ENSMUST00000220027.2	known	0.00	0	42	0	42	n	0.00	0	33	0	33	n	0.00	0	42	0	42	n	0.03	2	64	2	64	y	0.09	4	39	4	39	y	0.00	0	30	0	30	n	0.05	4	76	4	76	y	0.20	3	12	3	12	y	0.02	1	50	1	50	n	0.05	3	58	3	58	y	0.02	1	40	1	40	n	0.00	0	37	0	37	n	ENSMUSG00000039914.7	Coq10a	chr10	protein_coding	coenzyme Q10A
known_NIR_1398	chr10	128204022	128204567	-	128204022	128204388	5pMXE	ENSMUST00000220027.2	known	0.88	15	2	15	2	y	1.00	7	0	7	0	n	0.83	24	5	24	5	y	0.97	34	1	34	1	n	0.79	19	5	19	5	y	0.82	9	2	9	2	y	0.93	27	2	27	2	y	1.00	7	0	7	0	n	0.95	20	1	20	1	n	0.81	21	5	21	5	y	0.79	15	4	15	4	y	1.00	25	0	25	0	n	ENSMUSG00000039914.7	Coq10a	chr10	protein_coding	coenzyme Q10A
known_NIR_1399	chr10	128244705	128244948	-	128244705	128245116	A5SS	ENSMUST00000164199.8	known	0.00	0	186	0	186	n	0.00	0	154	0	154	n	0.01	1	176	1	176	n	0.00	0	175	0	175	n	0.00	0	211	0	211	n	0.00	0	118	0	118	n	0.01	3	248	3	248	y	0.00	0	87	0	87	n	0.00	0	168	0	168	n	0.00	0	239	0	239	n	0.00	0	175	0	175	n	0.00	0	197	0	197	n	ENSMUSG00000025374.14	Nabp2	chr10	protein_coding	nucleic acid binding protein 2
known_NIR_1400	chr10	128245217	128245376	-	128245217	128245605	A5SS	ENSMUST00000026439.14	known	0.04	4	90	4	90	y	0.00	0	65	0	65	n	0.02	2	83	2	83	y	0.02	2	82	2	82	y	0.01	1	87	1	87	n	0.00	0	49	0	49	n	0.01	1	94	1	94	n	0.08	4	47	4	47	y	0.00	0	78	0	78	n	0.00	0	82	0	82	n	0.00	0	115	0	115	n	0.01	1	82	1	82	n	ENSMUSG00000025374.14	Nabp2	chr10	protein_coding	nucleic acid binding protein 2
known_NIR_1401	chr10	128245217	128246283	-	128245217	128245605	5pMXE	ENSMUST00000026439.14	known	0.04	4	90	4	90	y	0.02	1	65	1	65	n	0.02	2	83	2	83	y	0.02	2	82	2	82	y	0.10	10	87	10	87	y	0.02	1	49	1	49	n	0.03	3	94	3	94	y	0.00	0	47	0	47	n	0.05	4	78	4	78	y	0.04	3	82	3	82	y	0.03	4	115	4	115	y	0.05	4	82	4	82	y	ENSMUSG00000025374.14	Nabp2	chr10	protein_coding	nucleic acid binding protein 2
known_NIR_1402	chr10	128245217	128246847	-	128245217	128245605	5pMXE	ENSMUST00000026439.14	known	0.01	1	90	1	90	n	0.00	0	65	0	65	n	0.00	0	83	0	83	n	0.02	2	82	2	82	y	0.00	0	87	0	87	n	0.00	0	49	0	49	n	0.00	0	94	0	94	n	0.00	0	47	0	47	n	0.01	1	78	1	78	n	0.02	2	82	2	82	y	0.00	0	115	0	115	n	0.00	0	82	0	82	n	ENSMUSG00000025374.14	Nabp2	chr10	protein_coding	nucleic acid binding protein 2
known_NIR_1403	chr10	128264572	128272337	+	128264572;128271453	128271182;128272337	ES	ENSMUST00000171342.3	known	0.11	2	15.5	2	19;12	y	0.00	0	14.5	0	14;15	n	0.04	1	25.5	1	22;29	n	0.05	1	19.0	1	17;21	n	0.00	0	25.0	0	24;26	n	0.00	0	14.5	0	13;16	n	0.10	2	17.5	2	16;19	y	0.00	0	12.5	0	14;11	n	0.00	0	8.5	0	11;6	n	0.00	0	25.5	0	32;19	n	0.07	1	12.5	1	13;12	n	0.00	0	13.0	0	12;14	n	ENSMUSG00000025373.15	Rnf41	chr10	protein_coding	ring finger protein 41
known_NIR_1404	chr10	128295664	128297221	+	128295306	128297221	A5SS	ENSMUST00000218228.2	known	0.20	9	35	9	35	y	0.43	13	17	13	17	y	0.33	16	33	16	33	y	0.40	27	41	27	41	y	0.49	39	41	39	41	y	0.45	19	23	19	23	y	0.26	14	40	14	40	y	0.50	26	26	26	26	y	0.45	17	21	17	21	y	0.38	30	48	30	48	y	0.44	17	22	17	22	y	0.35	22	41	22	41	y	ENSMUSG00000025369.16	Smarcc2	chr10	protein_coding	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
known_NIR_1405	chr10	128316873	128317952	+	128316873	128317551	3pMXE	ENSMUST00000217751.2	known	0.96	96	4	96	4	y	0.99	73	1	73	1	n	0.96	94	4	94	4	y	0.93	80	6	80	6	y	0.95	172	9	172	9	y	0.92	48	4	48	4	y	0.92	121	11	121	11	y	0.95	86	5	86	5	y	0.92	83	7	83	7	y	0.94	120	7	120	7	y	0.97	84	3	84	3	y	0.96	110	4	110	4	y	ENSMUSG00000025369.16	Smarcc2	chr10	protein_coding	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
known_NIR_1406	chr10	128316873;128317643	128317551;128317952	+	128316873	128317952	cassetteExon	ENSMUST00000026433.9	known	0.04	4.0	96	4;4	96	y	0.01	1.0	73	1;1	73	n	0.05	4.5	94	4;5	94	y	0.12	11.0	80	6;16	80	y	0.05	9.0	172	9;9	172	y	0.07	3.5	48	4;3	48	y	0.10	13.0	121	11;15	121	y	0.07	6.5	86	5;8	86	y	0.07	6.5	83	7;6	83	y	0.06	7.5	120	7;8	120	y	0.05	4.0	84	3;5	84	y	0.08	9.5	110	4;15	110	y	ENSMUSG00000025369.16	Smarcc2	chr10	protein_coding	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
known_NIR_1407	chr10	128324228	128324765	+	128323886	128324765	A5SS	ENSMUST00000026433.9	known	0.93	96	7	96	7	y	0.94	92	6	92	6	y	0.94	100	6	100	6	y	0.96	89	4	89	4	y	0.93	150	11	150	11	y	0.98	55	1	55	1	n	0.89	117	15	117	15	y	0.96	88	4	88	4	y	0.99	81	1	81	1	n	0.96	152	7	152	7	y	0.98	109	2	109	2	y	0.97	99	3	99	3	y	ENSMUSG00000025369.16	Smarcc2	chr10	protein_coding	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
known_NIR_1408	chr10	128326902;128327216	128327159;128327928	-	128326902	128327928	cassetteExon	ENSMUST00000164181.2	known	0.01	6.5	931	8;5	931	y	0.01	16.0	1183	14;18	1183	y	0.01	17.5	1164	20;15	1164	y	0.01	9.0	753	10;8	753	y	0.02	20.0	1256	19;21	1256	y	0.02	16.5	720	15;18	720	y	0.01	13.0	1465	12;14	1465	y	0.02	11.5	683	14;9	683	y	0.01	8.0	846	9;7	846	y	0.01	13.5	1388	10;17	1388	y	0.01	8.5	1212	10;7	1212	y	0.01	10.5	1183	14;7	1183	y	ENSMUSG00000090841.3	Myl6	chr10	protein_coding	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle
known_NIR_1409	chr10	128326902;128327216	128327159;128327928	-	128326902;128327633	128327589;128327928	MXE	ENSMUST00000218127.2	known	0.19	6.5	27.0	8;5	20;34	y	0.34	16.0	31.0	14;18	31;31	y	0.34	17.5	34.5	20;15	32;37	y	0.37	9.0	15.5	10;8	11;20	y	0.35	20.0	37.5	19;21	33;42	y	0.48	16.5	18.0	15;18	16;20	y	0.19	13.0	56.0	12;14	48;64	y	0.40	11.5	17.5	14;9	18;17	y	0.32	8.0	17.0	9;7	13;21	y	0.40	13.5	20.5	10;17	18;23	y	0.29	8.5	21.0	10;7	18;24	y	0.29	10.5	26.0	14;7	22;30	y	ENSMUSG00000090841.3	Myl6	chr10	protein_coding	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle
known_NIR_1410	chr10	128326902;128327633	128327159;128327928	-	128326902	128327928	cassetteExon	ENSMUST00000164181.2	known	0.02	21.0	931	8;34	931	y	0.02	22.5	1183	14;31	1183	y	0.02	28.5	1164	20;37	1164	y	0.02	15.0	753	10;20	753	y	0.02	30.5	1256	19;42	1256	y	0.02	17.5	720	15;20	720	y	0.03	38.0	1465	12;64	1465	y	0.02	15.5	683	14;17	683	y	0.02	15.0	846	9;21	846	y	0.01	16.5	1388	10;23	1388	y	0.01	17.0	1212	10;24	1212	y	0.02	22.0	1183	14;30	1183	y	ENSMUSG00000090841.3	Myl6	chr10	protein_coding	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle
known_NIR_1411	chr10	128326902;128327633	128327589;128327928	-	128326902	128327928	cassetteExon	ENSMUST00000164181.2	known	0.03	27.0	931	20;34	931	y	0.03	31.0	1183	31;31	1183	y	0.03	34.5	1164	32;37	1164	y	0.02	15.5	753	11;20	753	y	0.03	37.5	1256	33;42	1256	y	0.02	18.0	720	16;20	720	y	0.04	56.0	1465	48;64	1465	y	0.02	17.5	683	18;17	683	y	0.02	17.0	846	13;21	846	y	0.01	20.5	1388	18;23	1388	y	0.02	21.0	1212	18;24	1212	y	0.02	26.0	1183	22;30	1183	y	ENSMUSG00000090841.3	Myl6	chr10	protein_coding	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle
known_NIR_1412	chr10	128328271	128329408	-	128328271;128328578	128328471;128329408	ES	ENSMUST00000217969.2	known	0.01	5	737.5	5	1424;51	y	0.01	7	728.0	7	1411;45	y	0.04	39	899.5	39	1731;68	y	0.01	4	709.5	4	1361;58	y	0.02	16	944.5	16	1831;58	y	0.01	8	530.0	8	1023;37	y	0.02	19	991.0	19	1916;66	y	0.02	10	534.0	10	1032;36	y	0.01	4	610.5	4	1181;40	y	0.00	3	933.0	3	1786;80	y	0.01	6	779.5	6	1515;44	y	0.01	5	805.5	5	1548;63	y	ENSMUSG00000090841.3	Myl6	chr10	protein_coding	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle
known_NIR_1413	chr10	128328271	128329408	-	128328271;128328614	128328471;128329408	ES	ENSMUST00000164181.2	known	0.00	5	1236.5	5	1424;1049	y	0.01	7	1302.0	7	1411;1193	y	0.02	39	1575.5	39	1731;1420	y	0.00	4	1242.5	4	1361;1124	y	0.01	16	1609.0	16	1831;1387	y	0.01	8	932.0	8	1023;841	y	0.01	19	1783.5	19	1916;1651	y	0.01	10	945.0	10	1032;858	y	0.00	4	1085.5	4	1181;990	y	0.00	3	1713.5	3	1786;1641	y	0.00	6	1333.5	6	1515;1152	y	0.00	5	1405.5	5	1548;1263	y	ENSMUSG00000090841.3	Myl6	chr10	protein_coding	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle
known_NIR_1414	chr10	128328271	128329408	-	128328404	128329408	A3SS	ENSMUST00000220307.2	known	0.62	5	3	5	3	n	1.00	7	0	7	0	n	0.87	39	6	39	6	y	0.67	4	2	4	2	n	0.76	16	5	16	5	y	0.80	8	2	8	2	y	0.76	19	6	19	6	y	0.83	10	2	10	2	y	0.67	4	2	4	2	n	0.60	3	2	3	2	n	0.46	6	7	6	7	y	0.71	5	2	5	2	n	ENSMUSG00000090841.3	Myl6	chr10	protein_coding	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle
known_NIR_1415	chr10	128328271	128329408	-	128328614	128329408	A3SS	ENSMUST00000217913.2	known	0.00	5	1049	5	1049	y	0.01	7	1193	7	1193	y	0.03	39	1420	39	1420	y	0.00	4	1124	4	1124	y	0.01	16	1387	16	1387	y	0.01	8	841	8	841	y	0.01	19	1651	19	1651	y	0.01	10	858	10	858	y	0.00	4	990	4	990	y	0.00	3	1641	3	1641	y	0.01	6	1152	6	1152	y	0.00	5	1263	5	1263	y	ENSMUSG00000090841.3	Myl6	chr10	protein_coding	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle
known_NIR_1416	chr10	128328271;128328914	128328471;128329408	-	128328271	128329408	cassetteExon	ENSMUST00000218713.2	known	0.99	712.0	5	1424;0	5	n	0.99	705.5	7	1411;0	7	n	0.96	865.5	39	1731;0	39	n	0.99	680.5	4	1361;0	4	n	0.98	915.5	16	1831;0	16	n	0.98	511.5	8	1023;0	8	n	0.98	958.0	19	1916;0	19	n	0.98	516.0	10	1032;0	10	n	0.99	590.5	4	1181;0	4	n	1.00	893.0	3	1786;0	3	n	0.99	758.0	6	1515;1	6	n	0.99	775.0	5	1548;2	5	y	ENSMUSG00000090841.3	Myl6	chr10	protein_coding	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle
known_NIR_1417	chr10	128328404	128329408	-	128328578	128329408	A3SS&ES	ENSMUST00000217969.2	known	0.06	3	51	3	51	y	0.00	0	45	0	45	n	0.08	6	68	6	68	y	0.03	2	58	2	58	y	0.08	5	58	5	58	y	0.05	2	37	2	37	y	0.08	6	66	6	66	y	0.05	2	36	2	36	y	0.05	2	40	2	40	y	0.02	2	80	2	80	y	0.14	7	44	7	44	y	0.03	2	63	2	63	y	ENSMUSG00000090841.3	Myl6	chr10	protein_coding	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle
known_NIR_1418	chr10	128328404	128329408	-	128328614	128329408	A3SS&ES	ENSMUST00000164181.2	known	0.00	3	1049	3	1049	y	0.00	0	1193	0	1193	n	0.00	6	1420	6	1420	y	0.00	2	1124	2	1124	y	0.00	5	1387	5	1387	y	0.00	2	841	2	841	y	0.00	6	1651	6	1651	y	0.00	2	858	2	858	y	0.00	2	990	2	990	y	0.00	2	1641	2	1641	y	0.01	7	1152	7	1152	y	0.00	2	1263	2	1263	y	ENSMUSG00000090841.3	Myl6	chr10	protein_coding	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle
known_NIR_1419	chr10	128328404	128329408	-	128329222	128329408	A3SS&ES	ENSMUST00000219100.2	known	1.00	3	0	3	0	n	-	-	-	-	-	-	1.00	6	0	6	0	n	1.00	2	0	2	0	n	1.00	5	0	5	0	n	1.00	2	0	2	0	n	0.60	6	4	6	4	y	1.00	2	0	2	0	n	1.00	2	0	2	0	n	1.00	2	0	2	0	n	1.00	7	0	7	0	n	1.00	2	0	2	0	n	ENSMUSG00000090841.3	Myl6	chr10	protein_coding	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle
known_NIR_1420	chr10	128328578	128329408	-	128328614	128329408	A3SS	ENSMUST00000164181.2	known	0.05	51	1049	51	1049	y	0.04	45	1193	45	1193	y	0.05	68	1420	68	1420	y	0.05	58	1124	58	1124	y	0.04	58	1387	58	1387	y	0.04	37	841	37	841	y	0.04	66	1651	66	1651	y	0.04	36	858	36	858	y	0.04	40	990	40	990	y	0.05	80	1641	80	1641	y	0.04	44	1152	44	1152	y	0.05	63	1263	63	1263	y	ENSMUSG00000090841.3	Myl6	chr10	protein_coding	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle
known_NIR_1421	chr10	128328614;128329222	128328808;128329408	-	128328614	128329408	cassetteExon	ENSMUST00000164181.2	known	0.00	0.0	1049	0;0	1049	n	0.00	0.0	1193	0;0	1193	n	0.00	0.5	1420	1;0	1420	n	0.00	1.5	1124	3;0	1124	n	0.00	0.5	1387	1;0	1387	n	0.00	0.5	841	1;0	841	n	0.00	4.5	1651	5;4	1651	y	0.00	0.0	858	0;0	858	n	0.00	0.5	990	1;0	990	n	0.00	1.5	1641	3;0	1641	n	0.00	1.5	1152	3;0	1152	n	0.00	0.5	1263	1;0	1263	n	ENSMUSG00000090841.3	Myl6	chr10	protein_coding	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle
known_NIR_1422	chr10	128328914	128329408	-	128328578	128329408	A3SS	ENSMUST00000217969.2	known	0.00	0	51	0	51	n	0.00	0	45	0	45	n	0.00	0	68	0	68	n	0.00	0	58	0	58	n	0.00	0	58	0	58	n	0.00	0	37	0	37	n	0.00	0	66	0	66	n	0.00	0	36	0	36	n	0.00	0	40	0	40	n	0.00	0	80	0	80	n	0.02	1	44	1	44	n	0.03	2	63	2	63	y	ENSMUSG00000090841.3	Myl6	chr10	protein_coding	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle
known_NIR_1423	chr10	128329222	128329408	-	128328271	128329408	A3SS	ENSMUST00000218713.2	known	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	39	0	39	n	0.00	0	4	0	4	n	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.17	4	19	4	19	y	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	ENSMUSG00000090841.3	Myl6	chr10	protein_coding	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle
known_NIR_1424	chr10	128329222	128329408	-	128328578	128329408	A3SS	ENSMUST00000217969.2	known	0.00	0	51	0	51	n	0.00	0	45	0	45	n	0.00	0	68	0	68	n	0.00	0	58	0	58	n	0.00	0	58	0	58	n	0.00	0	37	0	37	n	0.06	4	66	4	66	y	0.00	0	36	0	36	n	0.00	0	40	0	40	n	0.00	0	80	0	80	n	0.00	0	44	0	44	n	0.00	0	63	0	63	n	ENSMUSG00000090841.3	Myl6	chr10	protein_coding	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle
known_NIR_1425	chr10	128329435	128329869	-	128329435	128329678	5pMXE	ENSMUST00000164181.2	known	0.00	2	635	2	635	y	0.00	1	679	1	679	n	0.00	3	847	3	847	y	0.01	4	690	4	690	y	0.00	4	871	4	871	y	0.00	1	503	1	503	n	0.00	4	1018	4	1018	y	0.00	0	496	0	496	n	0.01	5	640	5	640	y	0.00	3	994	3	994	y	0.00	1	699	1	699	n	0.00	0	759	0	759	n	ENSMUSG00000090841.3	Myl6	chr10	protein_coding	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle
known_NIR_1426	chr10	128349564	128351555	-	128348333	128351555	A3SS	ENSMUST00000026427.8	known	0.00	0	28	0	28	n	0.00	0	21	0	21	n	0.00	0	36	0	36	n	0.00	0	23	0	23	n	0.00	0	29	0	29	n	0.00	0	22	0	22	n	0.00	0	45	0	45	n	0.00	0	23	0	23	n	0.14	2	12	2	12	y	0.00	0	24	0	24	n	0.00	0	27	0	27	n	0.00	0	25	0	25	n	ENSMUSG00000025366.9	Esyt1	chr10	protein_coding	extended synaptotagmin-like protein 1
known_NIR_1427	chr10	128382760	128383563	-	128382760	128383040	5pMXE	ENSMUST00000152539.8	known	0.40	2	3	2	3	n	0.20	4	16	4	16	y	0.17	4	20	4	20	y	0.47	8	9	8	9	y	0.38	6	10	6	10	y	0.62	5	3	5	3	n	0.59	10	7	10	7	y	0.43	3	4	3	4	n	0.62	5	3	5	3	n	0.36	5	9	5	9	y	0.29	5	12	5	12	y	0.44	8	10	8	10	y	ENSMUSG00000039810.12	Zc3h10	chr10	protein_coding	zinc finger CCCH type containing 10
known_NIR_1428	chr10	128384842	128384957	-	128384840	128384957	A3SS	ENSMUST00000176683.8	known	0.98	1697	32	1697	32	y	0.97	1550	41	1550	41	y	0.98	2402	55	2402	55	y	0.99	1338	17	1338	17	y	0.98	2407	44	2407	44	y	0.98	1403	33	1403	33	y	0.98	2325	53	2325	53	y	0.98	1273	32	1273	32	y	0.97	1180	36	1180	36	y	0.98	1613	28	1613	28	y	0.98	1465	35	1465	35	y	0.99	1578	24	1578	24	y	ENSMUSG00000093674.8	Rpl41	chr10	protein_coding	ribosomal protein L41
known_NIR_1429	chr10	128535544;128535988	128535845;128537212	-	128535544	128537212	cassetteExon	ENSMUST00000026415.9	known	0.65	13.0	7	10;16	7	y	0.44	8.5	11	4;13	11	y	0.51	12.5	12	15;10	12	y	0.37	6.5	11	7;6	11	y	0.63	18.5	11	26;11	11	y	0.65	11.0	6	11;11	6	y	0.52	12.0	11	15;9	11	y	0.48	10.0	11	12;8	11	y	0.57	13.0	10	16;10	10	y	0.45	12.5	15	14;11	15	y	0.55	12.0	10	15;9	10	y	0.45	10.0	12	11;9	12	y	ENSMUSG00000025358.17	Cdk2	chr10	protein_coding	cyclin-dependent kinase 2
known_NIR_1430	chr10	128539872	128540357	-	128539872	128540581	A5SS	ENSMUST00000026415.9	known	0.11	2	16	2	16	y	0.00	0	5	0	5	n	0.09	2	21	2	21	y	0.00	0	10	0	10	n	0.00	0	29	0	29	n	0.00	0	17	0	17	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	31	0	31	n	0.00	0	15	0	15	n	0.00	0	16	0	16	n	ENSMUSG00000025358.17	Cdk2	chr10	protein_coding	cyclin-dependent kinase 2
known_NIR_1431	chr10	128584435	128601016	+	128583867	128601016	A5SS	ENSMUST00000163377.10	known	0.31	11	25	11	25	y	0.12	4	30	4	30	y	0.00	0	64	0	64	n	0.00	0	44	0	44	n	0.00	0	59	0	59	n	0.03	1	29	1	29	n	0.03	2	73	2	73	y	0.05	2	39	2	39	y	0.00	0	46	0	46	n	0.04	2	47	2	47	y	0.08	4	48	4	48	y	0.02	1	43	1	43	n	ENSMUSG00000064030.16	Pym1	chr10	protein_coding	PYM homolog 1, exon junction complex associated factor
known_NIR_1432	chr10	128584435;128586206	128586152;128601016	+	128584435	128601016	cassetteExon	ENSMUST00000065210.10	known	0.00	0.0	11	0;0	11	n	0.50	4.0	4	3;5	4	y	-	-	-	-	-	-	1.00	1.5	0	0;3	0	n	1.00	3.5	0	3;4	0	n	0.33	0.5	1	0;1	1	n	0.43	1.5	2	0;3	2	n	0.00	0.0	2	0;0	2	n	1.00	1.5	0	1;2	0	n	0.00	0.0	2	0;0	2	n	0.27	1.5	4	0;3	4	n	0.33	0.5	1	0;1	1	n	ENSMUSG00000064030.16	Pym1	chr10	protein_coding	PYM homolog 1, exon junction complex associated factor
known_NIR_1433	chr10	128586206	128601016	+	128583867	128601016	A5SS	ENSMUST00000163377.10	known	0.00	0	25	0	25	n	0.14	5	30	5	30	y	0.00	0	64	0	64	n	0.06	3	44	3	44	y	0.06	4	59	4	59	y	0.03	1	29	1	29	n	0.04	3	73	3	73	y	0.00	0	39	0	39	n	0.04	2	46	2	46	y	0.00	0	47	0	47	n	0.06	3	48	3	48	y	0.02	1	43	1	43	n	ENSMUSG00000064030.16	Pym1	chr10	protein_coding	PYM homolog 1, exon junction complex associated factor
known_NIR_1434	chr10	128627013	128627454	+	128626835	128627454	A5SS	ENSMUST00000219404.2	known	0.54	39	33	39	33	y	0.54	26	22	26	22	y	0.59	29	20	29	20	y	0.69	76	34	76	34	y	0.51	67	65	67	65	y	0.33	8	16	8	16	y	0.55	40	33	40	33	y	0.45	19	23	19	23	y	0.49	31	32	31	32	y	0.60	53	36	53	36	y	0.58	38	28	38	28	y	0.53	46	40	46	40	y	ENSMUSG00000025355.8	Mmp19	chr10	protein_coding	matrix metallopeptidase 19
known_NIR_1435	chr10	128641583	128642037	+	128641552	128642037	A5SS	ENSMUST00000217745.2	known	0.00	0	16	0	16	n	0.10	3	27	3	27	y	0.09	5	53	5	53	y	0.13	5	33	5	33	y	0.00	0	56	0	56	n	0.00	0	33	0	33	n	0.15	5	29	5	29	y	0.00	0	35	0	35	n	0.00	0	34	0	34	n	0.09	4	42	4	42	y	0.00	0	19	0	19	n	0.12	6	43	6	43	y	ENSMUSG00000025354.6	Dnajc14	chr10	protein_coding	DnaJ heat shock protein family (Hsp40) member C14
known_NIR_1436	chr10	128641595	128642037	+	128641552	128642037	A5SS	ENSMUST00000217745.2	known	0.00	0	16	0	16	n	0.00	0	27	0	27	n	0.04	2	53	2	53	y	0.00	0	33	0	33	n	0.05	3	56	3	56	y	0.06	2	33	2	33	y	0.00	0	29	0	29	n	0.00	0	35	0	35	n	0.06	2	34	2	34	y	0.00	0	42	0	42	n	0.05	1	19	1	19	n	0.02	1	43	1	43	n	ENSMUSG00000025354.6	Dnajc14	chr10	protein_coding	DnaJ heat shock protein family (Hsp40) member C14
known_NIR_1437	chr10	128641884	128642037	+	128641552	128642037	A5SS	ENSMUST00000217745.2	known	0.00	0	16	0	16	n	0.00	0	27	0	27	n	0.02	1	53	1	53	n	0.00	0	33	0	33	n	0.05	3	56	3	56	y	0.03	1	33	1	33	n	0.00	0	29	0	29	n	0.00	0	35	0	35	n	0.00	0	34	0	34	n	0.00	0	42	0	42	n	0.00	0	19	0	19	n	0.02	1	43	1	43	n	ENSMUSG00000025354.6	Dnajc14	chr10	protein_coding	DnaJ heat shock protein family (Hsp40) member C14
known_NIR_1438	chr10	128643489	128645896	+	128643489	128649907	A3SS	ENSMUST00000217745.2	known	0.00	0	53	0	53	n	0.00	0	53	0	53	n	0.00	0	84	0	84	n	0.00	0	52	0	52	n	0.00	0	89	0	89	n	0.00	0	55	0	55	n	0.00	0	79	0	79	n	0.00	0	43	0	43	n	0.00	0	41	0	41	n	0.02	2	80	2	80	y	0.00	0	59	0	59	n	0.00	0	73	0	73	n	ENSMUSG00000025354.6	Dnajc14	chr10	protein_coding	DnaJ heat shock protein family (Hsp40) member C14
known_NIR_1439	chr10	128655974	128657411	-	128655974;128656383	128656130;128657411	ES	ENSMUST00000026409.5	known	0.05	7	138.5	7	192;85	y	0.02	2	126.0	2	186;66	y	0.00	0	171.5	0	237;106	n	0.02	4	165.0	4	230;100	y	0.00	0	204.0	0	294;114	n	0.00	0	111.5	0	159;64	n	0.02	3	168.0	3	234;102	y	0.02	2	110.0	2	164;56	y	0.02	3	142.5	3	201;84	y	0.00	1	217.5	1	317;118	n	0.01	1	177.5	1	261;94	n	0.01	3	199.5	3	292;107	y	ENSMUSG00000025353.6	Ormdl2	chr10	protein_coding	ORM1-like 2 (S. cerevisiae)
known_NIR_1440	chr10	128655974	128657411	-	128655974;128656429	128656130;128657411	ES	ENSMUST00000219215.2	known	0.07	7	96.0	7	192;0	n	0.02	2	93.0	2	186;0	n	0.00	0	119.0	0	237;1	n	0.03	4	116.0	4	230;2	y	0.00	0	147.0	0	294;0	n	0.00	0	79.5	0	159;0	n	0.03	3	117.0	3	234;0	n	0.02	2	82.5	2	164;1	n	0.03	3	100.5	3	201;0	n	0.01	1	159.0	1	317;1	n	0.01	1	130.5	1	261;0	n	0.02	3	146.5	3	292;1	n	ENSMUSG00000025353.6	Ormdl2	chr10	protein_coding	ORM1-like 2 (S. cerevisiae)
known_NIR_1441	chr10	128655974;128656304	128656130;128657411	-	128655974	128657411	cassetteExon	ENSMUST00000217685.2	known	0.94	112.5	7	192;33	7	y	0.98	108.5	2	186;31	2	y	1.00	138.0	0	237;39	0	n	0.97	134.0	4	230;38	4	y	1.00	170.5	0	294;47	0	n	1.00	92.0	0	159;25	0	n	0.98	138.5	3	234;43	3	y	0.98	95.5	2	164;27	2	y	0.98	123.5	3	201;46	3	y	0.99	183.0	1	317;49	1	n	0.99	161.0	1	261;61	1	n	0.98	168.5	3	292;45	3	y	ENSMUSG00000025353.6	Ormdl2	chr10	protein_coding	ORM1-like 2 (S. cerevisiae)
known_NIR_1442	chr10	128656304	128657411	-	128656383	128657411	A3SS	ENSMUST00000026409.5	known	0.28	33	85	33	85	y	0.32	31	66	31	66	y	0.27	39	106	39	106	y	0.28	38	100	38	100	y	0.29	47	114	47	114	y	0.28	25	64	25	64	y	0.30	43	102	43	102	y	0.33	27	56	27	56	y	0.35	46	84	46	84	y	0.29	49	118	49	118	y	0.39	61	94	61	94	y	0.30	45	107	45	107	y	ENSMUSG00000025353.6	Ormdl2	chr10	protein_coding	ORM1-like 2 (S. cerevisiae)
known_NIR_1443	chr10	128656304	128657411	-	128656429	128657411	A3SS	ENSMUST00000219215.2	known	1.00	33	0	33	0	n	1.00	31	0	31	0	n	0.97	39	1	39	1	n	0.95	38	2	38	2	y	1.00	47	0	47	0	n	1.00	25	0	25	0	n	1.00	43	0	43	0	n	0.96	27	1	27	1	n	1.00	46	0	46	0	n	0.98	49	1	49	1	n	1.00	61	0	61	0	n	0.98	45	1	45	1	n	ENSMUSG00000025353.6	Ormdl2	chr10	protein_coding	ORM1-like 2 (S. cerevisiae)
known_NIR_1444	chr10	128656429	128657411	-	128656383	128657411	A3SS	ENSMUST00000026409.5	known	0.00	0	85	0	85	n	0.00	0	66	0	66	n	0.01	1	106	1	106	n	0.02	2	100	2	100	y	0.00	0	114	0	114	n	0.00	0	64	0	64	n	0.00	0	102	0	102	n	0.02	1	56	1	56	n	0.00	0	84	0	84	n	0.01	1	118	1	118	n	0.00	0	94	0	94	n	0.01	1	107	1	107	n	ENSMUSG00000025353.6	Ormdl2	chr10	protein_coding	ORM1-like 2 (S. cerevisiae)
known_NIR_1445	chr10	128669280	128674316	+	128669280	128674313	A3SS	ENSMUST00000218622.2	known	0.22	33	114	33	114	y	0.19	29	121	29	121	y	0.19	31	130	31	130	y	0.21	32	122	32	122	y	0.20	38	153	38	153	y	0.20	18	72	18	72	y	0.22	37	128	37	128	y	0.26	22	62	22	62	y	0.24	26	84	26	84	y	0.21	38	143	38	143	y	0.28	35	88	35	88	y	0.22	38	133	38	133	y	ENSMUSG00000078427.4	Sarnp	chr10	protein_coding	SAP domain containing ribonucleoprotein
known_NIR_1446	chr10	128687051;128687801	128687607;128689052	+	128687051	128689052	cassetteExon	ENSMUST00000105230.4	known	0.01	2.0	170	2;2	170	y	0.01	1.0	140	1;1	140	n	0.01	1.0	136	0;2	136	n	0.01	1.0	118	0;2	118	n	0.00	0.0	200	0;0	200	n	0.02	2.0	98	1;3	98	n	0.02	3.5	173	6;1	173	n	0.00	0.5	108	1;0	108	n	0.01	1.0	128	1;1	128	n	0.02	3.5	210	1;6	210	n	0.01	1.0	159	2;0	159	n	0.01	1.0	188	2;0	188	n	ENSMUSG00000078427.4	Sarnp	chr10	protein_coding	SAP domain containing ribonucleoprotein
known_NIR_1447	chr10	128749811	128750004	-	128749805	128750004	A3SS	ENSMUST00000026406.14	known	0.19	20	86	20	86	y	0.23	26	87	26	87	y	0.15	9	51	9	51	y	0.17	18	89	18	89	y	0.11	11	86	11	86	y	0.28	9	23	9	23	y	0.18	19	88	19	88	y	0.19	11	48	11	48	y	0.17	11	54	11	54	y	0.18	20	90	20	90	y	0.28	25	64	25	64	y	0.08	9	102	9	102	y	ENSMUSG00000025350.16	Rdh5	chr10	protein_coding	retinol dehydrogenase 5
known_NIR_1448	chr10	128754281	128755016	-	128754461	128755016	A3SS	ENSMUST00000026406.14	known	0.33	6	12	6	12	y	0.26	5	14	5	14	y	0.31	4	9	4	9	y	0.15	5	29	5	29	y	0.35	7	13	7	13	y	0.33	4	8	4	8	y	0.19	4	17	4	17	y	0.21	3	11	3	11	y	0.18	3	14	3	14	y	0.31	5	11	5	11	y	0.22	4	14	4	14	y	0.23	3	10	3	10	y	ENSMUSG00000025350.16	Rdh5	chr10	protein_coding	retinol dehydrogenase 5
known_NIR_1449	chr10	128754461	128755817	-	128754461	128755016	5pMXE	ENSMUST00000026406.14	known	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	29	0	29	n	0.50	13	13	13	13	y	0.00	0	8	0	8	n	0.00	0	17	0	17	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.39	7	11	7	11	y	0.00	0	14	0	14	n	0.00	0	10	0	10	n	ENSMUSG00000025350.16	Rdh5	chr10	protein_coding	retinol dehydrogenase 5
known_NIR_1450	chr10	128758595	128759797	-	128758595	128759244	5pMXE	ENSMUST00000153731.8	known	0.00	0	522	0	522	n	0.00	1	601	1	601	n	0.00	0	498	0	498	n	0.00	0	492	0	492	n	0.00	2	569	2	569	y	0.00	0	277	0	277	n	0.00	0	591	0	591	n	0.00	0	346	0	346	n	0.00	0	447	0	447	n	0.00	0	686	0	686	n	0.00	0	555	0	555	n	0.00	1	480	1	480	n	ENSMUSG00000090247.8	Bloc1s1	chr10	protein_coding	biogenesis of lysosomal organelles complex-1, subunit 1
known_NIR_1451	chr10	128776806;128777445	128777314;128778677	+	128776806;128777810	128777691;128778677	MXE	ENSMUST00000099112.4	known	0.00	0.0	10.5	0;0	13;8	n	0.08	1.0	11.5	1;1	7;16	n	0.07	1.5	20.0	2;1	19;21	n	0.06	0.5	8.0	0;1	4;12	n	0.11	2.0	17.0	4;0	15;19	n	0.17	1.5	7.5	2;1	8;7	n	0.07	2.5	35.0	4;1	30;40	n	0.12	1.5	10.5	0;3	9;12	n	0.12	1.0	7.5	0;2	4;11	n	0.09	2.0	19.5	2;2	12;27	y	0.00	0.0	6.5	0;0	6;7	n	0.00	0.0	11.0	0;0	10;12	n	ENSMUSG00000025348.10	Itga7	chr10	protein_coding	integrin alpha 7
known_NIR_1452	chr10	128789940;128792592	128792480;128793490	+	128789940	128793490	cassetteExon	ENSMUST00000099112.4	known	0.00	0.0	26	0;0	26	n	0.02	1.0	44	2;0	44	n	0.00	0.0	39	0;0	39	n	0.00	0.0	30	0;0	30	n	0.00	0.0	65	0;0	65	n	0.00	0.0	27	0;0	27	n	0.04	3.5	87	3;4	87	y	0.00	0.0	39	0;0	39	n	0.00	0.0	17	0;0	17	n	0.00	0.0	39	0;0	39	n	0.00	0.0	29	0;0	29	n	0.00	0.0	30	0;0	30	n	ENSMUSG00000025348.10	Itga7	chr10	protein_coding	integrin alpha 7
known_NIR_1453	chr10	13067983	13068153	-	13067983	13068772	A5SS	ENSMUST00000019950.6	known	0.07	2	25	2	25	y	0.00	0	17	0	17	n	0.03	2	62	2	62	y	0.04	2	43	2	43	y	0.00	0	39	0	39	n	0.00	0	19	0	19	n	0.06	2	34	2	34	y	0.09	2	21	2	21	y	0.00	0	25	0	25	n	0.04	1	25	1	25	n	0.00	0	16	0	16	n	0.00	0	16	0	16	n	ENSMUSG00000019814.6	Ltv1	chr10	protein_coding	LTV1 ribosome biogenesis factor
known_NIR_1454	chr10	13129623	13137510	-	13129623;13131065	13131054;13137510	ES	ENSMUST00000105545.12	known	0.00	0	1.0	0	2;0	n	-	-	-	-	-	-	0.00	0	1.0	0	1;1	n	1.00	3	0.0	3	0;0	n	0.75	6	2.0	6	2;2	y	0.67	1	0.5	1	0;1	n	0.40	3	4.5	3	6;3	y	0.25	1	3.0	1	3;3	n	-	-	-	-	-	-	0.80	4	1.0	4	1;1	n	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	ENSMUSG00000062866.17	Phactr2	chr10	protein_coding	phosphatase and actin regulator 2
known_NIR_1455	chr10	13411519	13413175	-	13411519;13411811	13411687;13413175	ES	ENSMUST00000170376.8	known	0.00	0	57.0	0	63;51	n	0.00	0	53.0	0	66;40	n	0.00	0	100.0	0	104;96	n	0.00	0	88.0	0	81;95	n	0.00	0	85.5	0	87;84	n	0.00	0	44.0	0	54;34	n	0.00	0	85.5	0	95;76	n	0.00	0	61.5	0	68;55	n	0.04	2	55.0	2	54;56	y	0.00	0	94.0	0	102;86	n	0.00	0	70.0	0	62;78	n	0.00	0	75.0	0	72;78	n	ENSMUSG00000019809.17	Pex3	chr10	protein_coding	peroxisomal biogenesis factor 3
known_NIR_1456	chr10	13422225	13428693	-	13422225	13428570	A5SS	ENSMUST00000170376.8	known	0.02	1	40	1	40	n	0.04	2	48	2	48	y	0.00	0	87	0	87	n	0.00	0	61	0	61	n	0.02	2	82	2	82	y	0.00	0	54	0	54	n	0.00	0	82	0	82	n	0.03	1	36	1	36	n	0.00	0	61	0	61	n	0.02	2	84	2	84	y	0.00	0	50	0	50	n	0.01	1	82	1	82	n	ENSMUSG00000019809.17	Pex3	chr10	protein_coding	peroxisomal biogenesis factor 3
known_NIR_1457	chr10	13523450	13566268	-	13523450;13529493	13529330;13566268	ES	ENSMUST00000162610.8	known	0.02	1	62.5	1	57;68	n	0.01	1	66.5	1	73;60	n	0.08	7	79.0	7	75;83	y	0.02	1	60.0	1	55;65	n	0.02	2	90.5	2	92;89	y	0.12	7	53.0	7	50;56	y	0.01	1	92.5	1	94;91	n	0.02	1	61.5	1	57;66	n	0.04	2	48.5	2	46;51	y	0.01	1	77.5	1	72;83	n	0.00	0	42.5	0	42;43	n	0.02	2	80.0	2	81;79	y	ENSMUSG00000019806.14	Aig1	chr10	protein_coding	androgen-induced 1
known_NIR_1458	chr10	13523450	13566268	-	13529493	13566268	3pMXE	ENSMUST00000162174.8	known	0.01	1	68	1	68	n	0.02	1	60	1	60	n	0.08	7	83	7	83	y	0.02	1	65	1	65	n	0.02	2	89	2	89	y	0.11	7	56	7	56	y	0.01	1	91	1	91	n	0.01	1	66	1	66	n	0.04	2	51	2	51	y	0.01	1	83	1	83	n	0.00	0	43	0	43	n	0.02	2	79	2	79	y	ENSMUSG00000019806.14	Aig1	chr10	protein_coding	androgen-induced 1
known_NIR_1459	chr10	13528755	13529330	-	13523450	13529330	A3SS	ENSMUST00000162610.8	known	0.30	24	57	24	57	y	0.14	12	73	12	73	y	0.36	43	75	43	75	y	0.14	9	55	9	55	y	0.22	26	92	26	92	y	0.35	27	50	27	50	y	0.21	25	94	25	94	y	0.15	10	57	10	57	y	0.12	6	46	6	46	y	0.25	24	72	24	72	y	0.22	12	42	12	42	y	0.14	13	81	13	81	y	ENSMUSG00000019806.14	Aig1	chr10	protein_coding	androgen-induced 1
known_NIR_1460	chr10	13705142	13705372	-	13705142	13744362	A5SS	ENSMUST00000162610.8	known	0.00	0	52	0	52	n	0.00	0	30	0	30	n	0.00	0	81	0	81	n	0.00	0	51	0	51	n	0.00	0	57	0	57	n	0.00	0	46	0	46	n	0.00	0	61	0	61	n	0.00	0	39	0	39	n	0.00	0	23	0	23	n	0.00	0	45	0	45	n	0.00	0	35	0	35	n	0.03	2	70	2	70	y	ENSMUSG00000019806.14	Aig1	chr10	protein_coding	androgen-induced 1
known_NIR_1461	chr10	13705142	13719925	-	13705142	13744362	A5SS	ENSMUST00000162610.8	known	0.02	1	52	1	52	n	0.09	3	30	3	30	y	0.01	1	81	1	81	n	0.04	2	51	2	51	y	0.03	2	57	2	57	y	0.00	0	46	0	46	n	0.03	2	61	2	61	y	0.05	2	39	2	39	y	0.04	1	23	1	23	n	0.04	2	45	2	45	y	0.03	1	35	1	35	n	0.04	3	70	3	70	y	ENSMUSG00000019806.14	Aig1	chr10	protein_coding	androgen-induced 1
known_NIR_1462	chr10	13942428;13993344	13993263;14002196	+	13942428	14002196	cassetteExon	ENSMUST00000015645.11	known	0.00	0.0	2	0;0	2	n	0.00	0.0	3	0;0	3	n	0.00	0.0	2	0;0	2	n	0.00	0.0	1	0;0	1	n	0.60	4.5	3	4;5	3	y	0.20	0.5	2	1;0	2	n	0.17	1.0	5	0;2	5	n	0.33	0.5	1	0;1	1	n	0.50	1.0	1	2;0	1	n	0.50	3.0	3	3;3	3	n	0.00	0.0	1	0;0	1	n	0.00	0.0	1	0;0	1	n	ENSMUSG00000015501.11	Hivep2	chr10	protein_coding	human immunodeficiency virus type I enhancer binding protein 2
known_NIR_1463	chr10	14531589	14543676	-	14531589;14536896	14536810;14543676	ES	ENSMUST00000154132.8	known	0.00	0	64.0	0	69;59	n	0.04	2	55.0	2	54;56	y	0.08	7	80.0	7	85;75	y	0.05	3	59.0	3	59;59	y	0.05	3	58.5	3	43;74	y	0.00	0	40.5	0	36;45	n	0.01	1	66.0	1	63;69	n	0.03	1	31.5	1	28;35	n	0.00	0	47.5	0	46;49	n	0.01	1	70.5	1	76;65	n	0.04	3	69.0	3	69;69	y	0.00	0	68.0	0	58;78	n	ENSMUSG00000019868.17	Vta1	chr10	protein_coding	vesicle (multivesicular body) trafficking 1
known_NIR_1464	chr10	14543852	14559808	-	14543852;14551786	14551678;14559808	ES	ENSMUST00000154132.8	known	0.00	0	40.5	0	41;40	n	0.00	0	47.5	0	46;49	n	0.00	0	81.0	0	81;81	n	0.00	0	51.0	0	47;55	n	0.00	0	66.0	0	62;70	n	0.02	1	48.0	1	53;43	n	0.00	0	72.5	0	86;59	n	0.00	0	32.0	0	38;26	n	0.00	0	48.0	0	52;44	n	0.00	0	70.0	0	81;59	n	0.03	2	55.5	2	63;48	y	0.00	0	53.5	0	62;45	n	ENSMUSG00000019868.17	Vta1	chr10	protein_coding	vesicle (multivesicular body) trafficking 1
known_NIR_1465	chr10	17599329	17599686	+	17599207	17599686	A5SS	ENSMUST00000038107.9	known	0.00	0	31	0	31	n	0.00	0	12	0	12	n	0.01	1	68	1	68	n	0.02	1	48	1	48	n	0.00	0	41	0	41	n	0.00	0	17	0	17	n	0.00	0	34	0	34	n	0.00	0	15	0	15	n	0.03	1	28	1	28	n	0.00	0	52	0	52	n	0.03	1	29	1	29	n	0.07	3	37	3	37	y	ENSMUSG00000039910.11	Cited2	chr10	protein_coding	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2
known_NIR_1466	chr10	17894649	17898815	-	17894653	17898815	A3SS	ENSMUST00000020002.9	known	0.04	3	70	3	70	y	0.04	2	55	2	55	y	0.03	4	140	4	140	y	0.00	0	57	0	57	n	0.02	2	92	2	92	y	0.02	1	58	1	58	n	0.03	2	78	2	78	y	0.04	2	53	2	53	y	0.02	1	45	1	45	n	0.05	4	73	4	73	y	0.02	1	64	1	64	n	0.02	2	80	2	80	y	ENSMUSG00000078453.4	Abracl	chr10	protein_coding	ABRA C-terminal like
known_NIR_1467	chr10	17894653	17898743	-	17894653	17898815	A5SS	ENSMUST00000020002.9	known	0.15	12	70	12	70	y	0.15	10	55	10	55	y	0.07	11	140	11	140	y	0.07	4	57	4	57	y	0.07	7	92	7	92	y	0.16	11	58	11	58	y	0.10	9	78	9	78	y	0.04	2	53	2	53	y	0.10	5	45	5	45	y	0.08	6	73	6	73	y	0.03	2	64	2	64	y	0.06	5	80	5	80	y	ENSMUSG00000078453.4	Abracl	chr10	protein_coding	ABRA C-terminal like
known_NIR_1468	chr10	17969588	17970158	+	17969651	17970158	A5SS	ENSMUST00000154718.8	known	0.11	2	16	2	16	y	0.00	0	21	0	21	n	0.06	4	58	4	58	y	0.03	1	38	1	38	n	0.17	4	20	4	20	y	0.16	3	16	3	16	y	0.05	1	18	1	18	n	0.00	0	29	0	29	n	0.12	4	28	4	28	y	0.11	4	34	4	34	y	0.15	5	29	5	29	y	0.06	2	31	2	31	y	ENSMUSG00000019854.18	Reps1	chr10	protein_coding	RalBP1 associated Eps domain containing protein
known_NIR_1469	chr10	17980023	17982955	+	17980023	17990147	A3SS	ENSMUST00000154718.8	known	0.00	0	24	0	24	n	0.00	0	31	0	31	n	0.00	0	52	0	52	n	0.00	0	15	0	15	n	0.00	0	36	0	36	n	0.00	0	10	0	10	n	0.00	0	29	0	29	n	0.05	1	19	1	19	n	0.00	0	19	0	19	n	0.04	2	47	2	47	y	0.04	1	27	1	27	n	0.00	0	38	0	38	n	ENSMUSG00000019854.18	Reps1	chr10	protein_coding	RalBP1 associated Eps domain containing protein
known_NIR_1470	chr10	17980023	17983419	+	17980023	17983416	A3SS	ENSMUST00000126390.8	known	0.67	2	1	2	1	n	0.00	0	2	0	2	n	0.17	3	15	3	15	y	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.25	2	6	2	6	n	0.00	0	4	0	4	n	0.10	1	9	1	9	n	ENSMUSG00000019854.18	Reps1	chr10	protein_coding	RalBP1 associated Eps domain containing protein
known_NIR_1471	chr10	17980023;17983496	17983416;17990147	+	17980023	17990147	cassetteExon	ENSMUST00000154718.8	known	0.16	4.5	24	1;8	24	n	0.11	4.0	31	2;6	31	y	0.26	18.0	52	15;21	52	y	0.25	5.0	15	6;4	15	y	0.18	8.0	36	8;8	36	y	0.31	4.5	10	5;4	10	y	0.27	10.5	29	10;11	29	y	0.21	5.0	19	2;8	19	y	0.36	10.5	19	11;10	19	y	0.17	9.5	47	6;13	47	y	0.16	5.0	27	4;6	27	y	0.24	12.0	38	9;15	38	y	ENSMUSG00000019854.18	Reps1	chr10	protein_coding	RalBP1 associated Eps domain containing protein
known_NIR_1472	chr10	17980023;17983496	17983419;17990147	+	17980023	17990147	cassetteExon	ENSMUST00000154718.8	known	0.17	5.0	24	2;8	24	y	0.09	3.0	31	0;6	31	n	0.19	12.0	52	3;21	52	y	0.12	2.0	15	0;4	15	n	0.10	4.0	36	0;8	36	n	0.17	2.0	10	0;4	10	n	0.16	5.5	29	0;11	29	n	0.17	4.0	19	0;8	19	n	0.21	5.0	19	0;10	19	n	0.14	7.5	47	2;13	47	y	0.10	3.0	27	0;6	27	n	0.17	8.0	38	1;15	38	n	ENSMUSG00000019854.18	Reps1	chr10	protein_coding	RalBP1 associated Eps domain containing protein
known_NIR_1473	chr10	18094140	18095236	-	18092030	18095236	A3SS	ENSMUST00000080860.13	known	0.44	8	10	8	10	y	0.50	19	19	19	19	y	0.65	20	11	20	11	y	0.40	17	25	17	25	y	0.56	19	15	19	15	y	0.48	10	11	10	11	y	0.26	10	29	10	29	y	0.73	16	6	16	6	y	0.39	17	27	17	27	y	0.38	18	30	18	30	y	0.51	20	19	20	19	y	0.26	9	26	9	26	y	ENSMUSG00000059554.13	Ccdc28a	chr10	protein_coding	coiled-coil domain containing 28A
known_NIR_1474	chr10	18100808	18110600	-	18100808;18106366	18106167;18110600	ES	ENSMUST00000080860.13	known	0.04	1	27.5	1	33;22	n	0.21	6	22.5	6	23;22	y	0.11	4	32.5	4	38;27	y	0.12	5	38.0	5	30;46	y	0.24	12	39.0	12	38;40	y	0.12	2	15.0	2	21;9	y	0.18	8	37.0	8	42;32	y	0.13	2	13.5	2	13;14	y	0.12	3	21.0	3	28;14	y	0.07	3	39.0	3	45;33	y	0.16	4	21.0	4	19;23	y	0.04	1	26.5	1	29;24	n	ENSMUSG00000059554.13	Ccdc28a	chr10	protein_coding	coiled-coil domain containing 28A
known_NIR_1475	chr10	18284262	18348667	+	18195024	18348667	A5SS	ENSMUST00000207038.2	known	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.80	8	2	8	2	y	1.00	5	0	5	0	n	0.44	4	5	4	5	n	0.71	5	2	5	2	n	1.00	3	0	3	0	n	0.83	5	1	5	1	n	1.00	5	0	5	0	n	0.60	3	2	3	2	n	0.38	3	5	3	5	n	0.29	2	5	2	5	n	ENSMUSG00000039835.17	Nhsl1	chr10	protein_coding	NHS-like 1
known_NIR_1476	chr10	18387490;18391908	18391777;18399539	+	18387490	18399539	cassetteExon	ENSMUST00000207038.2	known	0.25	1.0	3	1;1	3	n	0.00	0.0	3	0;0	3	n	0.25	2.0	6	4;0	6	n	0.16	1.5	8	1;2	8	n	0.31	4.0	9	2;6	9	y	0.56	2.5	2	2;3	2	n	0.11	0.5	4	0;1	4	n	0.07	0.5	7	0;1	7	n	0.33	1.0	2	0;2	2	n	0.33	2.0	4	1;3	4	n	0.11	0.5	4	1;0	4	n	0.25	1.0	3	1;1	3	n	ENSMUSG00000039835.17	Nhsl1	chr10	protein_coding	NHS-like 1
known_NIR_1477	chr10	18887538	18890150	-	18887538	18890901	A5SS	ENSMUST00000019997.11	known	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.20	3	12	3	12	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.23	3	10	3	10	y	0.29	2	5	2	5	n	0.25	3	9	3	9	y	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	ENSMUSG00000019850.12	Tnfaip3	chr10	protein_coding	tumor necrosis factor, alpha-induced protein 3
known_NIR_1478	chr10	19473264	19477068	+	19473278	19477068	A5SS	ENSMUST00000020188.13	known	0.12	4	30	4	30	y	0.00	0	14	0	14	n	0.06	4	59	4	59	y	0.00	0	28	0	28	n	0.00	0	52	0	52	n	0.00	0	28	0	28	n	0.05	2	38	2	38	y	0.04	1	26	1	26	n	0.14	3	19	3	19	y	0.02	1	42	1	42	n	0.12	3	22	3	22	y	0.07	3	41	3	41	y	ENSMUSG00000020009.14	Ifngr1	chr10	protein_coding	interferon gamma receptor 1
known_NIR_1479	chr10	19770104	19780309	-	19770104;19770548	19770471;19780309	ES	ENSMUST00000020182.16	known	0.00	1	207.0	1	224;190	n	0.00	0	171.0	0	190;152	n	0.00	0	160.0	0	182;138	n	0.00	0	248.5	0	265;232	n	0.00	0	304.0	0	327;281	n	0.00	0	118.0	0	129;107	n	0.00	1	332.0	1	365;299	n	0.00	0	128.5	0	128;129	n	0.01	2	206.5	2	225;188	y	0.02	5	322.0	5	350;294	y	0.00	0	270.5	0	290;251	n	0.00	0	310.0	0	353;267	n	ENSMUSG00000020003.17	Pex7	chr10	protein_coding	peroxisomal biogenesis factor 7
known_NIR_1480	chr10	20133043	20137581	+	20133043	20137605	A3SS	ENSMUST00000020173.16	known	0.00	0	24	0	24	n	0.06	1	15	1	15	n	0.02	1	57	1	57	n	0.00	0	22	0	22	n	0.07	3	41	3	41	y	0.00	0	22	0	22	n	0.00	0	36	0	36	n	0.00	0	42	0	42	n	0.00	0	29	0	29	n	0.00	0	31	0	31	n	0.04	1	27	1	27	n	0.00	0	36	0	36	n	ENSMUSG00000019996.18	Map7	chr10	protein_coding	microtubule-associated protein 7
known_NIR_1481	chr10	20197862	20198715	+	20197862	20198709	A3SS	ENSMUST00000092678.10	known	0.12	3	21	3	21	y	0.30	8	19	8	19	y	0.04	1	27	1	27	n	0.38	8	13	8	13	y	0.31	14	31	14	31	y	0.28	9	23	9	23	y	0.15	6	35	6	35	y	0.23	6	20	6	20	y	0.17	4	20	4	20	y	0.23	8	27	8	27	y	0.35	6	11	6	11	y	0.26	8	23	8	23	y	ENSMUSG00000037608.17	Bclaf1	chr10	protein_coding	BCL2-associated transcription factor 1
known_NIR_1482	chr10	20201845;20203137	20202910;20203848	+	20201845	20203848	cassetteExon	ENSMUST00000092678.10	known	0.40	12.0	18	8;16	18	y	0.40	18.5	28	14;23	28	y	0.20	13.0	52	15;11	52	y	0.33	14.5	29	14;15	29	y	0.26	17.5	50	17;18	50	y	0.10	2.0	18	3;1	18	n	0.24	14.0	45	14;14	45	y	0.26	6.0	17	4;8	17	y	0.22	8.0	28	9;7	28	y	0.23	16.0	54	15;17	54	y	0.28	9.5	24	7;12	24	y	0.30	17.0	39	21;13	39	y	ENSMUSG00000037608.17	Bclaf1	chr10	protein_coding	BCL2-associated transcription factor 1
known_NIR_1483	chr10	20208007;20208303	20208142;20209138	+	20208007	20209138	cassetteExon	ENSMUST00000092678.10	known	0.36	14.5	26	13;16	26	y	0.30	18.5	43	19;18	43	y	0.36	15.5	27	23;8	27	y	0.35	17.5	33	24;11	33	y	0.37	29.0	49	37;21	49	y	0.27	10.5	28	13;8	28	y	0.30	20.0	47	29;11	47	y	0.27	8.5	23	10;7	23	y	0.33	11.5	23	13;10	23	y	0.23	14.0	46	22;6	46	y	0.34	12.0	23	12;12	23	y	0.41	18.5	27	26;11	27	y	ENSMUSG00000037608.17	Bclaf1	chr10	protein_coding	BCL2-associated transcription factor 1
known_NIR_1484	chr10	20209318;20210391	20210245;20215455	+	20209318	20215455	cassetteExon	ENSMUST00000092678.10	known	0.52	44.5	41	44;45	41	y	0.51	40.0	39	35;45	39	y	0.48	45.0	48	45;45	48	y	0.55	49.0	40	52;46	40	y	0.58	74.5	54	71;78	54	y	0.47	32.5	37	31;34	37	y	0.48	59.0	63	49;69	63	y	0.64	32.0	18	29;35	18	y	0.54	45.5	38	44;47	38	y	0.46	54.5	63	45;64	63	y	0.55	42.0	34	37;47	34	y	0.44	39.0	49	37;41	49	y	ENSMUSG00000037608.17	Bclaf1	chr10	protein_coding	BCL2-associated transcription factor 1
known_NIR_1485	chr10	21183678	21184998	+	21183678	21185642	A3SS	ENSMUST00000061324.6	known	1.00	4	0	4	0	n	1.00	7	0	7	0	n	0.92	23	2	23	2	y	0.85	11	2	11	2	y	0.88	14	2	14	2	y	0.67	8	4	8	4	y	1.00	17	0	17	0	n	0.71	5	2	5	2	n	1.00	7	0	7	0	n	0.88	7	1	7	1	n	0.83	5	1	5	1	n	1.00	13	0	13	0	n	ENSMUSG00000019977.17	Hbs1l	chr10	protein_coding	Hbs1-like (S. cerevisiae)
known_NIR_1486	chr10	21183678	21184998	+	21183678	21212875	A3SS	ENSMUST00000020153.10	known	0.36	4	7	4	7	y	1.00	7	0	7	0	n	0.62	23	14	23	14	y	0.52	11	10	11	10	y	0.54	14	12	14	12	y	0.62	8	5	8	5	y	0.55	17	14	17	14	y	0.42	5	7	5	7	y	0.39	7	11	7	11	y	0.50	7	7	7	7	y	0.45	5	6	5	6	y	0.57	13	10	13	10	y	ENSMUSG00000019977.17	Hbs1l	chr10	protein_coding	Hbs1-like (S. cerevisiae)
known_NIR_1487	chr10	21183678	21185642	+	21183678	21212866	A3SS	ENSMUST00000218032.2	known	0.00	0	75	0	75	n	0.00	0	71	0	71	n	0.01	2	191	2	191	y	0.02	2	123	2	123	y	0.01	2	161	2	161	y	0.06	4	64	4	64	y	0.00	0	167	0	167	n	0.02	2	95	2	95	y	0.00	0	103	0	103	n	0.01	1	131	1	131	n	0.01	1	87	1	87	n	0.00	0	139	0	139	n	ENSMUSG00000019977.17	Hbs1l	chr10	protein_coding	Hbs1-like (S. cerevisiae)
known_NIR_1488	chr10	21183678	21185642	+	21183678	21212875	A3SS	ENSMUST00000020153.10	known	0.00	0	7	0	7	n	-	-	-	-	-	-	0.12	2	14	2	14	y	0.17	2	10	2	10	y	0.14	2	12	2	12	y	0.44	4	5	4	5	n	0.00	0	14	0	14	n	0.22	2	7	2	7	n	0.00	0	11	0	11	n	0.12	1	7	1	7	n	0.14	1	6	1	6	n	0.00	0	10	0	10	n	ENSMUSG00000019977.17	Hbs1l	chr10	protein_coding	Hbs1-like (S. cerevisiae)
known_NIR_1489	chr10	21183678	21212866	+	21183678	21184998	3pMXE	ENSMUST00000092674.14	known	0.95	75	4	75	4	y	0.91	71	7	71	7	y	0.89	191	23	191	23	y	0.92	123	11	123	11	y	0.92	161	14	161	14	y	0.89	64	8	64	8	y	0.91	167	17	167	17	y	0.95	95	5	95	5	y	0.94	103	7	103	7	y	0.95	131	7	131	7	y	0.95	87	5	87	5	y	0.91	139	13	139	13	y	ENSMUSG00000019977.17	Hbs1l	chr10	protein_coding	Hbs1-like (S. cerevisiae)
known_NIR_1490	chr10	21183678	21212866	+	21183678	21212875	A3SS	ENSMUST00000020153.10	known	0.91	75	7	75	7	y	1.00	71	0	71	0	n	0.93	191	14	191	14	y	0.92	123	10	123	10	y	0.93	161	12	161	12	y	0.93	64	5	64	5	y	0.92	167	14	167	14	y	0.93	95	7	95	7	y	0.90	103	11	103	11	y	0.95	131	7	131	7	y	0.94	87	6	87	6	y	0.93	139	10	139	10	y	ENSMUSG00000019977.17	Hbs1l	chr10	protein_coding	Hbs1-like (S. cerevisiae)
known_NIR_1491	chr10	21183678;21185213	21184998;21212866	+	21183678	21212866	cassetteExon	ENSMUST00000218032.2	known	0.03	2.5	75	4;1	75	n	0.05	4.0	71	7;1	71	n	0.09	19.0	191	23;15	191	y	0.05	6.5	123	11;2	123	y	0.07	11.5	161	14;9	161	y	0.07	5.0	64	8;2	64	y	0.08	14.0	167	17;11	167	y	0.03	2.5	95	5;0	95	n	0.04	4.5	103	7;2	103	y	0.04	5.5	131	7;4	131	y	0.03	2.5	87	5;0	87	n	0.05	8.0	139	13;3	139	y	ENSMUSG00000019977.17	Hbs1l	chr10	protein_coding	Hbs1-like (S. cerevisiae)
known_NIR_1492	chr10	21260684	21264837	+	21260684	21264967	A3SS	ENSMUST00000042699.14	known	0.00	0	546	0	546	n	0.00	0	405	0	405	n	0.00	0	332	0	332	n	0.00	0	692	0	692	n	0.00	0	811	0	811	n	0.00	0	299	0	299	n	0.00	0	693	0	693	n	0.00	0	386	0	386	n	0.00	2	542	2	542	y	0.00	0	726	0	726	n	0.00	0	551	0	551	n	0.00	0	773	0	773	n	ENSMUSG00000037542.14	Aldh8a1	chr10	protein_coding	aldehyde dehydrogenase 8 family, member A1
known_NIR_1493	chr10	21870080	21870865	+	21868306	21870865	A5SS	ENSMUST00000150089.8	known	0.64	7	4	7	4	y	0.57	4	3	4	3	n	0.50	3	3	3	3	n	1.00	5	0	5	0	n	0.75	3	1	3	1	n	0.50	1	1	1	1	n	0.50	4	4	4	4	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	3	0	3	0	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	ENSMUSG00000019970.16	Sgk1	chr10	protein_coding	serum/glucocorticoid regulated kinase 1
known_NIR_1494	chr10	21870724	21870865	+	21868306	21870865	A5SS	ENSMUST00000150089.8	known	0.86	24	4	24	4	y	0.85	17	3	17	3	y	0.93	42	3	42	3	y	1.00	9	0	9	0	n	0.93	13	1	13	1	n	0.93	14	1	14	1	n	0.80	16	4	16	4	y	0.89	8	1	8	1	n	1.00	25	0	25	0	n	1.00	24	0	24	0	n	1.00	5	0	5	0	n	0.93	25	2	25	2	y	ENSMUSG00000019970.16	Sgk1	chr10	protein_coding	serum/glucocorticoid regulated kinase 1
known_NIR_1495	chr10	21870724	21870865	+	21870080	21870865	A5SS	ENSMUST00000092673.11	known	0.77	24	7	24	7	y	0.81	17	4	17	4	y	0.93	42	3	42	3	y	0.64	9	5	9	5	y	0.81	13	3	13	3	y	0.93	14	1	14	1	n	0.80	16	4	16	4	y	0.89	8	1	8	1	n	0.96	25	1	25	1	n	0.89	24	3	24	3	y	0.83	5	1	5	1	n	1.00	25	0	25	0	n	ENSMUSG00000019970.16	Sgk1	chr10	protein_coding	serum/glucocorticoid regulated kinase 1
known_NIR_1496	chr10	21993755	22024388	-	21990247	22024388	A3SS	ENSMUST00000180726.2	known	0.00	0	4	0	4	n	0.50	2	2	2	2	n	0.00	0	4	0	4	n	0.20	2	8	2	8	y	0.40	4	6	4	6	y	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.25	2	6	2	6	n	0.33	3	6	3	6	n	0.00	0	6	0	6	n	ENSMUSG00000097327.8	E030030I06Rik	chr10	protein_coding	RIKEN cDNA E030030I06 gene
known_NIR_1497	chr10	22020413	22024388	-	21990247	22024388	A3SS	ENSMUST00000180726.2	known	0.69	9	4	9	4	y	0.83	10	2	10	2	y	0.76	13	4	13	4	y	0.43	6	8	6	8	y	0.67	12	6	12	6	y	0.86	6	1	6	1	n	0.65	13	7	13	7	y	0.62	5	3	5	3	n	0.40	2	3	2	3	n	0.54	7	6	7	6	y	0.40	4	6	4	6	y	0.68	13	6	13	6	y	ENSMUSG00000097327.8	E030030I06Rik	chr10	protein_coding	RIKEN cDNA E030030I06 gene
known_NIR_1498	chr10	22020413	22024388	-	21993755	22024388	A3SS	ENSMUST00000181677.2	known	1.00	9	0	9	0	n	0.83	10	2	10	2	y	1.00	13	0	13	0	n	0.75	6	2	6	2	n	0.75	12	4	12	4	y	1.00	6	0	6	0	n	1.00	13	0	13	0	n	1.00	5	0	5	0	n	1.00	2	0	2	0	n	0.78	7	2	7	2	n	0.57	4	3	4	3	n	1.00	13	0	13	0	n	ENSMUSG00000097327.8	E030030I06Rik	chr10	protein_coding	RIKEN cDNA E030030I06 gene
known_NIR_1499	chr10	22049435	22049775	+	22049149	22049775	A5SS	ENSMUST00000181645.8	known	0.50	4	4	4	4	n	1.00	2	0	2	0	n	0.62	8	5	8	5	y	0.75	3	1	3	1	n	0.67	8	4	8	4	y	0.40	2	3	2	3	n	0.81	21	5	21	5	y	1.00	5	0	5	0	n	1.00	2	0	2	0	n	0.88	7	1	7	1	n	1.00	1	0	1	0	n	0.88	14	2	14	2	y	ENSMUSG00000053219.16	Raet1e	chr10	protein_coding	retinoic acid early transcript 1E
known_NIR_1500	chr10	22237808	22238170	+	22237544	22238170	A5SS	ENSMUST00000182677.8	known	0.00	0	4	0	4	n	0.30	3	7	3	7	y	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.22	2	7	2	7	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.14	1	6	1	6	n	0.00	0	4	0	4	n	-	-	-	-	-	-	ENSMUSG00000078452.11	Raet1d	chr10	protein_coding	retinoic acid early transcript delta
known_NIR_1501	chr10	22581794	22582176	-	22581794	22583488	A5SS	ENSMUST00000127698.8	known	0.14	3	18	3	18	y	0.06	1	17	1	17	n	0.10	4	37	4	37	y	0.15	4	23	4	23	y	0.04	1	22	1	22	n	0.12	2	15	2	15	y	0.11	5	42	5	42	y	0.32	7	15	7	15	y	0.06	1	15	1	15	n	0.14	5	32	5	32	y	0.05	1	19	1	19	n	0.16	5	26	5	26	y	ENSMUSG00000071359.14	Tbpl1	chr10	protein_coding	TATA box binding protein-like 1
known_NIR_1502	chr10	22587990	22607682	-	22587990	22607015	5pMXE	ENSMUST00000127698.8	known	0.06	1	17	1	17	n	0.31	4	9	4	9	y	0.18	5	23	5	23	y	0.15	3	17	3	17	y	0.08	2	23	2	23	y	0.09	1	10	1	10	n	0.15	4	23	4	23	y	0.08	1	11	1	11	n	0.00	0	10	0	10	n	0.05	1	21	1	21	n	0.19	3	13	3	13	y	0.22	4	14	4	14	y	ENSMUSG00000071359.14	Tbpl1	chr10	protein_coding	TATA box binding protein-like 1
known_NIR_1503	chr10	23661902	23662662	-	23661902	23662523	A5SS	ENSMUST00000218142.2	known	0.98	2798	46	2798	46	y	0.98	3228	62	3228	62	y	0.99	4619	49	4619	49	y	0.98	2039	42	2039	42	y	0.99	4151	60	4151	60	y	0.99	2694	31	2694	31	y	0.98	4119	76	4119	76	y	0.99	2393	28	2393	28	y	0.98	2174	45	2174	45	y	0.98	3074	77	3074	77	y	0.98	3039	72	3039	72	y	0.98	3029	75	3029	75	y	ENSMUSG00000061983.8	Rps12	chr10	protein_coding	ribosomal protein S12
known_NIR_1504	chr10	23680159;23681043	23680936;23681791	+	23680159	23681791	cassetteExon	ENSMUST00000119597.8	known	0.27	1.5	4	1;2	4	n	1.00	2.0	0	2;2	0	n	0.11	0.5	4	1;0	4	n	0.00	0.0	11	0;0	11	n	0.21	3.5	13	3;4	13	y	0.00	0.0	1	0;0	1	n	0.17	1.0	5	2;0	5	n	0.12	1.0	7	2;0	7	n	0.00	0.0	3	0;0	3	n	0.12	1.0	7	2;0	7	n	0.00	0.0	9	0;0	9	n	0.43	1.5	2	1;2	2	n	ENSMUSG00000037455.17	Slc18b1	chr10	protein_coding	solute carrier family 18, subfamily B, member 1
known_NIR_1505	chr10	23681938	23692191	+	23681938	23686687	A3SS&ES	ENSMUST00000179321.8	known	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.25	1	3	1	3	n	0.25	1	3	1	3	n	0.00	0	7	0	7	n	0.10	1	9	1	9	n	0.00	0	3	0	3	n	0.14	1	6	1	6	n	0.40	2	3	2	3	n	0.36	4	7	4	7	y	0.56	5	4	5	4	n	0.00	0	7	0	7	n	ENSMUSG00000037455.17	Slc18b1	chr10	protein_coding	solute carrier family 18, subfamily B, member 1
known_NIR_1506	chr10	23681938	23692191	+	23681938;23686843	23686687;23692191	ES	ENSMUST00000119597.8	known	0.00	0	4.0	0	5;3	n	0.40	1	1.5	1	2;1	n	0.17	1	5.0	1	3;7	n	0.33	1	2.0	1	3;1	n	0.00	0	7.0	0	7;7	n	0.11	1	8.0	1	9;7	n	0.00	0	4.5	0	3;6	n	0.13	1	6.5	1	6;7	n	0.40	2	3.0	2	3;3	n	0.40	4	6.0	4	7;5	y	0.53	5	4.5	5	4;5	y	0.00	0	5.0	0	7;3	n	ENSMUSG00000037455.17	Slc18b1	chr10	protein_coding	solute carrier family 18, subfamily B, member 1
known_NIR_1507	chr10	23773321	23774328	+	23773321	23774306	A3SS	ENSMUST00000041416.8	known	0.11	6	48	6	48	y	0.10	9	79	9	79	y	0.04	6	130	6	130	y	0.12	9	69	9	69	y	0.05	8	149	8	149	y	0.06	4	61	4	61	y	0.08	16	189	16	189	y	0.10	11	95	11	95	y	0.14	8	48	8	48	y	0.13	25	167	25	167	y	0.09	8	77	8	77	y	0.21	3	11	3	11	y	ENSMUSG00000037440.9	Vnn1	chr10	protein_coding	vanin 1
known_NIR_1508	chr10	24025624	24031133	+	24025306	24031133	A5SS	ENSMUST00000218050.2	known	0.08	2	23	2	23	y	0.00	0	21	0	21	n	0.06	2	30	2	30	y	0.03	1	33	1	33	n	0.03	1	31	1	31	n	0.00	0	28	0	28	n	0.00	0	30	0	30	n	0.06	1	16	1	16	n	0.04	1	22	1	22	n	0.06	2	29	2	29	y	0.00	0	17	0	17	n	0.03	1	38	1	38	n	ENSMUSG00000019998.7	Stx7	chr10	protein_coding	syntaxin 7
known_NIR_1509	chr10	24527297	24528733	-	24527294	24528733	A3SS	ENSMUST00000105520.8	known	0.00	0	17	0	17	n	0.29	7	17	7	17	y	0.20	4	16	4	16	y	0.08	3	33	3	33	y	0.05	2	38	2	38	y	0.05	1	18	1	18	n	0.06	2	30	2	30	y	0.00	0	24	0	24	n	0.00	0	19	0	19	n	0.04	2	51	2	51	y	0.00	0	22	0	22	n	0.08	3	36	3	36	y	ENSMUSG00000037370.14	Enpp1	chr10	protein_coding	ectonucleotide pyrophosphatase/phosphodiesterase 1
known_NIR_1510	chr10	24540499	24540809	-	24540525	24540809	A3SS	ENSMUST00000105520.8	known	0.00	0	13	0	13	n	0.08	1	11	1	11	n	0.00	0	11	0	11	n	0.00	0	26	0	26	n	0.00	0	47	0	47	n	0.00	0	14	0	14	n	0.08	2	23	2	23	y	0.00	0	9	0	9	n	0.18	2	9	2	9	y	0.07	2	25	2	25	y	0.06	1	17	1	17	n	0.05	2	35	2	35	y	ENSMUSG00000037370.14	Enpp1	chr10	protein_coding	ectonucleotide pyrophosphatase/phosphodiesterase 1
known_NIR_1511	chr10	24653869	24654536	-	24653869	24654591	A5SS	ENSMUST00000020169.9	known	0.00	0	141	0	141	n	0.01	1	159	1	159	n	0.01	1	156	1	156	n	0.00	0	145	0	145	n	0.00	0	310	0	310	n	0.00	0	102	0	102	n	0.00	0	272	0	272	n	0.00	0	191	0	191	n	0.00	0	133	0	133	n	0.00	1	211	1	211	n	0.01	1	99	1	99	n	0.01	2	243	2	243	y	ENSMUSG00000019989.9	Enpp3	chr10	protein_coding	ectonucleotide pyrophosphatase/phosphodiesterase 3
known_NIR_1512	chr10	24653869;24654146	24654001;24654591	-	24653869	24654591	cassetteExon	ENSMUST00000020169.9	known	0.00	0.0	141	0;0	141	n	0.01	1.0	159	1;1	159	n	0.01	1.5	156	2;1	156	n	0.02	3.5	145	3;4	145	y	0.00	0.5	310	0;1	310	n	0.00	0.0	102	0;0	102	n	0.01	2.5	272	4;1	272	n	0.00	0.5	191	1;0	191	n	0.00	0.5	133	1;0	133	n	0.03	6.0	211	8;4	211	y	0.01	1.0	99	2;0	99	n	0.01	1.5	243	3;0	243	n	ENSMUSG00000019989.9	Enpp3	chr10	protein_coding	ectonucleotide pyrophosphatase/phosphodiesterase 3
known_NIR_1513	chr10	24654723	24660296	-	24654723	24660688	A5SS	ENSMUST00000020169.9	known	0.00	0	179	0	179	n	0.00	0	213	0	213	n	0.00	0	185	0	185	n	0.00	0	233	0	233	n	0.00	2	419	2	419	y	0.00	0	151	0	151	n	0.00	1	333	1	333	n	0.00	0	248	0	248	n	0.01	2	167	2	167	y	0.00	1	256	1	256	n	0.00	0	160	0	160	n	0.00	0	284	0	284	n	ENSMUSG00000019989.9	Enpp3	chr10	protein_coding	ectonucleotide pyrophosphatase/phosphodiesterase 3
known_NIR_1514	chr10	24693862	24700701	-	24693862;24696530	24696470;24700701	ES	ENSMUST00000020169.9	known	0.14	9	55.5	9	56;55	y	0.02	1	47.0	1	48;46	n	0.13	11	74.0	11	62;86	y	0.04	5	121.0	5	112;130	y	0.04	7	157.0	7	145;169	y	0.10	6	55.5	6	55;56	y	0.13	16	105.0	16	92;118	y	0.06	7	112.5	7	102;123	y	0.16	11	57.5	11	50;65	y	0.24	32	102.5	32	87;118	y	0.11	6	49.5	6	40;59	y	0.14	17	105.5	17	101;110	y	ENSMUSG00000019989.9	Enpp3	chr10	protein_coding	ectonucleotide pyrophosphatase/phosphodiesterase 3
known_NIR_1515	chr10	24693862	24700701	-	24696530	24700701	3pMXE	ENSMUST00000220209.2	known	0.14	9	55	9	55	y	0.02	1	46	1	46	n	0.11	11	86	11	86	y	0.04	5	130	5	130	y	0.04	7	169	7	169	y	0.10	6	56	6	56	y	0.12	16	118	16	118	y	0.05	7	123	7	123	y	0.14	11	65	11	65	y	0.21	32	118	32	118	y	0.09	6	59	6	59	y	0.13	17	110	17	110	y	ENSMUSG00000019989.9	Enpp3	chr10	protein_coding	ectonucleotide pyrophosphatase/phosphodiesterase 3
known_NIR_1516	chr10	24702196	24718597	-	24702196	24707629	5pMXE	ENSMUST00000217903.2	known	0.01	1	72	1	72	n	0.02	1	50	1	50	n	0.01	1	105	1	105	n	0.00	0	145	0	145	n	0.01	2	222	2	222	y	0.04	4	85	4	85	y	0.01	2	137	2	137	y	0.01	2	159	2	159	y	0.00	0	64	0	64	n	0.02	2	122	2	122	y	0.00	0	71	0	71	n	0.06	9	138	9	138	y	ENSMUSG00000019989.9	Enpp3	chr10	protein_coding	ectonucleotide pyrophosphatase/phosphodiesterase 3
known_NIR_1517	chr10	24702196;24707704	24707629;24718597	-	24702196	24718597	cassetteExon	ENSMUST00000219342.2	known	0.98	50.0	1	72;28	1	n	0.97	33.5	1	50;17	1	n	0.98	58.5	1	105;12	1	n	1.00	92.0	0	145;39	0	n	0.98	129.0	2	222;36	2	y	0.93	49.5	4	85;14	4	y	0.98	90.0	2	137;43	2	y	0.98	89.5	2	159;20	2	y	1.00	49.0	0	64;34	0	n	0.98	95.0	2	122;68	2	y	1.00	46.5	0	71;22	0	n	0.92	98.0	9	138;58	9	y	ENSMUSG00000019989.9	Enpp3	chr10	protein_coding	ectonucleotide pyrophosphatase/phosphodiesterase 3
known_NIR_1518	chr10	24707704	24718597	-	24707704	24711914	5pMXE	ENSMUST00000020169.9	known	0.31	28	62	28	62	y	0.46	17	20	17	20	y	0.17	12	57	12	57	y	0.37	39	66	39	66	y	0.23	36	118	36	118	y	0.20	14	56	14	56	y	0.35	43	79	43	79	y	0.18	20	90	20	90	y	0.65	34	18	34	18	y	0.53	68	61	68	61	y	0.43	22	29	22	29	y	0.45	58	70	58	70	y	ENSMUSG00000019989.9	Enpp3	chr10	protein_coding	ectonucleotide pyrophosphatase/phosphodiesterase 3
known_NIR_1519	chr10	24758547	24764298	+	24758547;24759119	24759102;24764298	ES	ENSMUST00000092646.13	known	0.91	5	0.5	5	0;1	n	-	-	-	-	-	-	1.00	10	0.0	10	0;0	n	0.86	3	0.5	3	0;1	n	0.71	5	2.0	5	2;2	n	0.57	4	3.0	4	3;3	y	0.50	4	4.0	4	4;4	y	0.80	6	1.5	6	1;2	n	0.67	2	1.0	2	1;1	n	1.00	7	0.0	7	0;0	n	0.00	0	1.0	0	1;1	n	0.92	11	1.0	11	1;1	n	ENSMUSG00000019984.17	Med23	chr10	protein_coding	mediator complex subunit 23
known_NIR_1520	chr10	25046300	25096509	-	25047146	25096509	A3SS	ENSMUST00000175979.2	known	0.89	8	1	8	1	n	0.72	13	5	13	5	y	0.95	21	1	21	1	n	0.80	12	3	12	3	y	0.76	13	4	13	4	y	1.00	12	0	12	0	n	0.82	18	4	18	4	y	1.00	12	0	12	0	n	1.00	5	0	5	0	n	0.82	18	4	18	4	y	0.71	12	5	12	5	y	0.78	18	5	18	5	y	ENSMUSG00000039166.17	Akap7	chr10	protein_coding	A kinase (PRKA) anchor protein 7
known_NIR_1521	chr10	25364991	25369465	+	25364991	25377722	A3SS	ENSMUST00000218903.2	known	0.29	2	5	2	5	n	0.75	3	1	3	1	n	0.80	4	1	4	1	n	0.33	1	2	1	2	n	0.79	11	3	11	3	y	0.50	2	2	2	2	n	0.83	10	2	10	2	y	1.00	3	0	3	0	n	1.00	2	0	2	0	n	0.75	3	1	3	1	n	0.50	1	1	1	1	n	0.75	6	2	6	2	n	ENSMUSG00000019978.17	Epb41l2	chr10	protein_coding	erythrocyte membrane protein band 4.1 like 2
known_NIR_1522	chr10	25371489	25377722	+	25371489	25377476	A3SS&ES	ENSMUST00000220290.2	known	0.20	1	4	1	4	n	-	-	-	-	-	-	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.20	3	12	3	12	y	0.67	2	1	2	1	n	0.14	1	6	1	6	n	0.00	0	5	0	5	n	1.00	4	0	4	0	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	4	0	4	n	ENSMUSG00000019978.17	Epb41l2	chr10	protein_coding	erythrocyte membrane protein band 4.1 like 2
known_NIR_1523	chr10	25371489;25377529	25377476;25377722	+	25371489	25377722	cassetteExon	ENSMUST00000053748.16	known	0.82	4.5	1	4;5	1	n	1.00	1.0	0	0;2	0	n	0.85	5.5	1	5;6	1	n	1.00	4.5	0	4;5	0	n	0.75	9.0	3	12;6	3	y	0.20	0.5	2	1;0	2	n	0.83	5.0	1	6;4	1	n	1.00	3.0	0	5;1	0	n	0.00	0.0	4	0;0	4	n	1.00	1.0	0	1;1	0	n	0.33	0.5	1	1;0	1	n	1.00	4.5	0	4;5	0	n	ENSMUSG00000019978.17	Epb41l2	chr10	protein_coding	erythrocyte membrane protein band 4.1 like 2
known_NIR_1524	chr10	25377529	25377722	+	25364991	25377722	A5SS	ENSMUST00000218903.2	known	0.50	5	5	5	5	y	0.67	2	1	2	1	n	0.86	6	1	6	1	n	0.71	5	2	5	2	n	0.67	6	3	6	3	n	0.00	0	2	0	2	n	0.67	4	2	4	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.71	5	2	5	2	n	ENSMUSG00000019978.17	Epb41l2	chr10	protein_coding	erythrocyte membrane protein band 4.1 like 2
known_NIR_1525	chr10	26218565;26220149	26220075;26220510	-	26218565	26220510	cassetteExon	ENSMUST00000105519.10	known	1.00	2.5	0	3;2	0	n	0.82	4.5	1	5;4	1	n	0.78	10.5	3	11;10	3	y	1.00	7.0	0	7;7	0	n	0.88	7.0	1	6;8	1	n	1.00	5.5	0	8;3	0	n	0.72	10.5	4	12;9	4	y	1.00	11.0	0	12;10	0	n	1.00	3.0	0	2;4	0	n	0.88	7.0	1	11;3	1	n	1.00	2.5	0	4;1	0	n	0.82	4.5	1	6;3	1	n	ENSMUSG00000039089.16	L3mbtl3	chr10	protein_coding	L3MBTL3 histone methyl-lysine binding protein
known_NIR_1526	chr10	28436161	28442491	+	28436161;28438138	28438103;28442491	ES	ENSMUST00000166468.2	known	0.89	48	6.0	48	8;4	y	0.83	39	8.0	39	8;8	y	0.91	107	11.0	107	12;10	y	0.86	66	10.5	66	11;10	y	0.87	84	12.5	84	12;13	y	0.92	49	4.5	49	7;2	y	0.91	78	7.5	78	9;6	y	0.90	56	6.0	56	8;4	y	0.87	30	4.5	30	6;3	y	0.90	79	9.0	79	10;8	y	0.93	40	3.0	40	4;2	y	0.91	105	10.5	105	11;10	y	ENSMUSG00000019889.11	Ptprk	chr10	protein_coding	protein tyrosine phosphatase, receptor type, K
known_NIR_1527	chr10	28438138	28441092	+	28438138	28442491	A3SS	ENSMUST00000166468.2	known	0.20	1	4	1	4	n	0.11	1	8	1	8	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.07	1	13	1	13	n	0.33	1	2	1	2	n	0.40	4	6	4	6	y	0.00	0	4	0	4	n	0.40	2	3	2	3	n	0.20	2	8	2	8	y	0.33	1	2	1	2	n	0.00	0	10	0	10	n	ENSMUSG00000019889.11	Ptprk	chr10	protein_coding	protein tyrosine phosphatase, receptor type, K
known_NIR_1528	chr10	28462086	28462904	+	28462068	28462904	A5SS	ENSMUST00000166468.2	known	0.01	1	107	1	107	n	0.00	0	96	0	96	n	0.01	2	134	2	134	y	0.00	0	94	0	94	n	0.00	0	160	0	160	n	0.00	0	53	0	53	n	0.00	0	116	0	116	n	0.02	1	61	1	61	n	0.00	0	84	0	84	n	0.00	0	134	0	134	n	0.00	0	81	0	81	n	0.02	3	142	3	142	y	ENSMUSG00000019889.11	Ptprk	chr10	protein_coding	protein tyrosine phosphatase, receptor type, K
known_NIR_1529	chr10	28598632	28657687	+	28598632;28637609	28637151;28657687	ES	ENSMUST00000060409.13	known	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1.5	0	1;2	n	0.00	0	3.0	0	5;1	n	-	-	-	-	-	-	0.00	0	0.5	0	0;1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	2	4.0	2	5;3	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000049109.16	Themis	chr10	protein_coding	thymocyte selection associated
known_NIR_1530	chr10	29189360	29193503	+	29189293	29193503	A5SS	ENSMUST00000160399.8	known	0.14	4	24	4	24	y	0.18	4	18	4	18	y	0.09	3	32	3	32	y	0.15	6	35	6	35	y	0.11	6	49	6	49	y	0.13	2	13	2	13	y	0.06	2	34	2	34	y	0.04	1	22	1	22	n	0.17	8	40	8	40	y	0.13	6	40	6	40	y	0.18	7	31	7	31	y	0.21	10	38	10	38	y	ENSMUSG00000019883.12	Echdc1	chr10	protein_coding	enoyl Coenzyme A hydratase domain containing 1
known_NIR_1531	chr10	29189729	29193503	+	29189293	29193503	A5SS	ENSMUST00000160399.8	known	0.66	47	24	47	24	y	0.62	29	18	29	18	y	0.67	64	32	64	32	y	0.64	63	35	63	35	y	0.67	98	49	98	49	y	0.73	35	13	35	13	y	0.59	48	34	48	34	y	0.69	48	22	48	22	y	0.65	73	40	73	40	y	0.68	86	40	86	40	y	0.70	71	31	71	31	y	0.72	97	38	97	38	y	ENSMUSG00000019883.12	Echdc1	chr10	protein_coding	enoyl Coenzyme A hydratase domain containing 1
known_NIR_1532	chr10	29189729	29193503	+	29189360	29193503	A5SS	ENSMUST00000161605.8	known	0.92	47	4	47	4	y	0.88	29	4	29	4	y	0.96	64	3	64	3	y	0.91	63	6	63	6	y	0.94	98	6	98	6	y	0.95	35	2	35	2	y	0.96	48	2	48	2	y	0.98	48	1	48	1	n	0.90	73	8	73	8	y	0.93	86	6	86	6	y	0.91	71	7	71	7	y	0.91	97	10	97	10	y	ENSMUSG00000019883.12	Echdc1	chr10	protein_coding	enoyl Coenzyme A hydratase domain containing 1
known_NIR_1533	chr10	29210267	29210462	+	29210267	29220337	A3SS	ENSMUST00000160399.8	known	0.00	0	106	0	106	n	0.00	0	77	0	77	n	0.00	0	109	0	109	n	0.01	2	137	2	137	y	0.01	1	188	1	188	n	0.00	0	85	0	85	n	0.00	0	135	0	135	n	0.00	0	91	0	91	n	0.01	1	134	1	134	n	0.00	0	207	0	207	n	0.00	0	134	0	134	n	0.02	4	162	4	162	y	ENSMUSG00000019883.12	Echdc1	chr10	protein_coding	enoyl Coenzyme A hydratase domain containing 1
known_NIR_1534	chr10	29230443	29237960	-	29230443	29237281	A5SS&ES	ENSMUST00000214896.2	known	0.44	12	15	12	15	y	0.22	6	21	6	21	y	0.37	14	24	14	24	y	0.37	11	19	11	19	y	0.45	15	18	15	18	y	1.00	7	0	7	0	n	0.37	14	24	14	24	y	0.38	8	13	8	13	y	0.58	11	8	11	8	y	0.38	9	15	9	15	y	0.42	10	14	10	14	y	0.41	9	13	9	13	y	ENSMUSG00000038876.13	Rnf146	chr10	protein_coding	ring finger protein 146
known_NIR_1535	chr10	29230443	29237960	-	29230443	29237980	A5SS	ENSMUST00000160144.9	known	0.80	12	3	12	3	y	0.60	6	4	6	4	y	0.88	14	2	14	2	y	0.52	11	10	11	10	y	0.58	15	11	15	11	y	0.78	7	2	7	2	n	0.70	14	6	14	6	y	0.47	8	9	8	9	y	0.73	11	4	11	4	y	0.47	9	10	9	10	y	0.43	10	13	10	13	y	0.45	9	11	9	11	y	ENSMUSG00000038876.13	Rnf146	chr10	protein_coding	ring finger protein 146
known_NIR_1536	chr10	29230443	29237960	-	29230443;29237341	29237281;29237960	ES	ENSMUST00000037548.11	known	0.57	12	9.0	12	15;3	y	0.34	6	11.5	6	21;2	y	0.47	14	16.0	14	24;8	y	0.48	11	12.0	11	19;5	y	0.57	15	11.5	15	18;5	y	1.00	7	0.0	7	0;0	n	0.44	14	18.0	14	24;12	y	0.48	8	8.5	8	13;4	y	0.69	11	5.0	11	8;2	y	0.49	9	9.5	9	15;4	y	0.57	10	7.5	10	14;1	n	0.49	9	9.5	9	13;6	y	ENSMUSG00000038876.13	Rnf146	chr10	protein_coding	ring finger protein 146
known_NIR_1537	chr10	29230443	29237980	-	29230443	29237281	A5SS&ES	ENSMUST00000037548.11	known	0.17	3	15	3	15	y	0.16	4	21	4	21	y	0.08	2	24	2	24	y	0.34	10	19	10	19	y	0.38	11	18	11	18	y	1.00	2	0	2	0	n	0.20	6	24	6	24	y	0.41	9	13	9	13	y	0.33	4	8	4	8	y	0.40	10	15	10	15	y	0.48	13	14	13	14	y	0.46	11	13	11	13	y	ENSMUSG00000038876.13	Rnf146	chr10	protein_coding	ring finger protein 146
known_NIR_1538	chr10	29230443;29237341	29237281;29237980	-	29230443	29237980	cassetteExon	ENSMUST00000160144.9	known	0.74	8.5	3	15;2	3	y	0.79	15.0	4	21;9	4	y	0.87	13.0	2	24;2	2	y	0.56	12.5	10	19;6	10	y	0.57	14.5	11	18;11	11	y	0.00	0.0	2	0;0	2	n	0.70	14.0	6	24;4	6	y	0.50	9.0	9	13;5	9	y	0.58	5.5	4	8;3	4	y	0.46	8.5	10	15;2	10	y	0.35	7.0	13	14;0	13	n	0.41	7.5	11	13;2	11	y	ENSMUSG00000038876.13	Rnf146	chr10	protein_coding	ring finger protein 146
known_NIR_1539	chr10	29237341	29237980	-	29237341	29237960	A5SS	ENSMUST00000037548.11	known	0.40	2	3	2	3	n	0.82	9	2	9	2	y	0.20	2	8	2	8	y	0.55	6	5	6	5	y	0.69	11	5	11	5	y	-	-	-	-	-	-	0.25	4	12	4	12	y	0.56	5	4	5	4	n	0.60	3	2	3	2	n	0.33	2	4	2	4	n	0.00	0	1	0	1	n	0.25	2	6	2	6	n	ENSMUSG00000038876.13	Rnf146	chr10	protein_coding	ring finger protein 146
known_NIR_1540	chr10	30442502	30466021	-	30442502;30463591	30463435;30466021	ES	ENSMUST00000019927.7	known	0.12	2	14.0	2	9;19	y	0.00	0	7.0	0	4;10	n	0.10	2	18.5	2	15;22	y	0.00	0	14.0	0	16;12	n	0.00	0	25.5	0	30;21	n	0.00	0	12.5	0	8;17	n	0.00	0	21.0	0	23;19	n	0.00	0	6.5	0	4;9	n	0.00	0	9.0	0	12;6	n	0.04	1	24.5	1	25;24	n	0.00	0	20.0	0	22;18	n	0.00	0	15.5	0	19;12	n	ENSMUSG00000019792.9	Trmt11	chr10	protein_coding	tRNA methyltransferase 11
known_NIR_1541	chr10	30466931	30470111	-	30466931;30467098	30467017;30470111	ES	ENSMUST00000019927.7	known	0.24	4	12.5	4	12;13	y	0.36	2	3.5	2	7;0	n	0.00	0	17.5	0	15;20	n	0.00	0	9.5	0	12;7	n	0.22	3	10.5	3	8;13	y	0.15	1	5.5	1	6;5	n	0.07	1	13.5	1	18;9	n	0.00	0	9.0	0	11;7	n	0.23	4	13.5	4	15;12	y	0.00	0	15.5	0	16;15	n	0.19	3	13.0	3	14;12	y	0.00	0	15.0	0	19;11	n	ENSMUSG00000019792.9	Trmt11	chr10	protein_coding	tRNA methyltransferase 11
known_NIR_1542	chr10	30466931	30470111	-	30467098	30470111	A3SS	ENSMUST00000216705.2	known	0.24	4	13	4	13	y	1.00	2	0	2	0	n	0.00	0	20	0	20	n	0.00	0	7	0	7	n	0.19	3	13	3	13	y	0.17	1	5	1	5	n	0.10	1	9	1	9	n	0.00	0	7	0	7	n	0.25	4	12	4	12	y	0.00	0	15	0	15	n	0.20	3	12	3	12	y	0.00	0	11	0	11	n	ENSMUSG00000019792.9	Trmt11	chr10	protein_coding	tRNA methyltransferase 11
known_NIR_1543	chr10	30487713;30489368	30489274;30490709	-	30487713	30490709	cassetteExon	ENSMUST00000161074.8	known	0.08	14.0	167	28;0	167	n	0.06	13.5	212	27;0	212	n	0.04	8.5	228	17;0	228	n	0.08	15.0	176	30;0	176	n	0.03	9.5	284	19;0	284	n	0.06	11.0	180	22;0	180	n	0.04	10.5	266	21;0	266	n	0.02	3.5	166	7;0	166	n	0.05	10.0	196	19;1	196	n	0.07	20.0	266	40;0	266	n	0.05	14.5	260	25;4	260	y	0.05	14.5	268	29;0	268	n	ENSMUSG00000019791.13	Hint3	chr10	protein_coding	histidine triad nucleotide binding protein 3
known_NIR_1544	chr10	31208965;31214241	31214181;31222607	-	31208965	31222607	cassetteExon	ENSMUST00000214644.2	known	0.06	1.0	15	1;1	15	n	0.03	0.5	17	0;1	17	n	0.00	0.0	27	0;0	27	n	0.00	0.0	11	0;0	11	n	0.07	1.5	21	2;1	21	n	0.08	1.0	11	2;0	11	n	0.07	1.5	21	1;2	21	n	0.08	0.5	6	1;0	6	n	0.00	0.0	22	0;0	22	n	0.07	2.0	27	0;4	27	n	0.17	4.0	20	5;3	20	y	0.00	0.0	30	0;0	30	n	ENSMUSG00000000296.9	Tpd52l1	chr10	protein_coding	tumor protein D52-like 1
known_NIR_1545	chr10	31208965;31217174	31217136;31222607	-	31208965	31222607	cassetteExon	ENSMUST00000214644.2	known	0.00	0.0	15	0;0	15	n	0.08	1.5	17	1;2	17	n	0.10	3.0	27	4;2	27	y	0.12	1.5	11	3;0	11	n	0.02	0.5	21	0;1	21	n	0.00	0.0	11	0;0	11	n	0.05	1.0	21	1;1	21	n	0.00	0.0	6	0;0	6	n	0.02	0.5	22	0;1	22	n	0.07	2.0	27	0;4	27	n	0.05	1.0	20	1;1	20	n	0.06	2.0	30	1;3	30	n	ENSMUSG00000000296.9	Tpd52l1	chr10	protein_coding	tumor protein D52-like 1
known_NIR_1546	chr10	31214241	31222607	-	31214241;31217174	31217136;31222607	ES	ENSMUST00000000305.7	known	0.67	1	0.5	1	1;0	n	0.40	1	1.5	1	1;2	n	0.00	0	1.0	0	0;2	n	-	-	-	-	-	-	0.50	1	1.0	1	1;1	n	-	-	-	-	-	-	0.80	2	0.5	2	0;1	n	-	-	-	-	-	-	0.00	0	1.0	0	1;1	n	0.57	4	3.0	4	2;4	y	0.86	3	0.5	3	0;1	n	0.00	0	1.5	0	0;3	n	ENSMUSG00000000296.9	Tpd52l1	chr10	protein_coding	tumor protein D52-like 1
known_NIR_1547	chr10	33806340	33816154	-	33806340;33811253	33811085;33816154	ES	ENSMUST00000218055.2	known	0.00	0	4.0	0	4;4	n	0.38	3	5.0	3	5;5	y	0.17	2	10.0	2	11;9	y	0.00	0	5.5	0	6;5	n	0.06	1	15.0	1	16;14	n	0.20	2	8.0	2	12;4	y	0.20	3	12.0	3	15;9	y	0.22	1	3.5	1	5;2	n	0.30	3	7.0	3	6;8	y	0.21	3	11.5	3	5;18	y	0.35	4	7.5	4	10;5	y	0.22	3	10.5	3	8;13	y	ENSMUSG00000039531.9	Zup1	chr10	protein_coding	zinc finger containing ubiquitin peptidase 1
known_NIR_1548	chr10	33825860;33826613	33826479;33827127	-	33825860	33827127	cassetteExon	ENSMUST00000218055.2	known	0.00	0.0	7	0;0	7	n	0.50	1.0	1	1;1	1	n	0.54	3.5	3	5;2	3	y	0.00	0.0	4	0;0	4	n	0.14	1.0	6	0;2	6	n	0.33	1.0	2	1;1	2	n	0.23	1.5	5	2;1	5	n	0.00	0.0	4	0;0	4	n	0.33	1.5	3	3;0	3	n	0.00	0.0	9	0;0	9	n	0.00	0.0	5	0;0	5	n	0.15	2.0	11	4;0	11	n	ENSMUSG00000039531.9	Zup1	chr10	protein_coding	zinc finger containing ubiquitin peptidase 1
known_NIR_1549	chr10	34200458	34275734	-	34200458;34274191	34274110;34275734	ES	ENSMUST00000105512.8	known	0.06	1	16.5	1	23;10	n	0.14	2	12.5	2	20;5	y	0.00	0	23.0	0	40;6	n	0.00	0	27.0	0	41;13	n	0.00	0	27.0	0	43;11	n	0.00	0	7.5	0	12;3	n	0.05	1	21.0	1	30;12	n	0.08	1	12.0	1	21;3	n	0.00	0	15.0	0	25;5	n	0.04	1	25.0	1	38;12	n	0.00	0	22.5	0	37;8	n	0.05	1	18.5	1	35;2	n	ENSMUSG00000039480.15	Nt5dc1	chr10	protein_coding	5'-nucleotidase domain containing 1
known_NIR_1550	chr10	34200458	34275734	-	34200458;34274194	34274110;34275734	ES	ENSMUST00000047885.14	known	0.04	1	25.0	1	23;27	n	0.08	2	22.0	2	20;24	y	0.00	0	41.5	0	40;43	n	0.00	0	41.5	0	41;42	n	0.00	0	42.5	0	43;42	n	0.00	0	10.5	0	12;9	n	0.03	1	30.5	1	30;31	n	0.04	1	22.0	1	21;23	n	0.00	0	22.0	0	25;19	n	0.03	1	33.0	1	38;28	n	0.00	0	27.5	0	37;18	n	0.03	1	33.5	1	35;32	n	ENSMUSG00000039480.15	Nt5dc1	chr10	protein_coding	5'-nucleotidase domain containing 1
known_NIR_1551	chr10	34273237	34274110	-	34200458	34274110	A3SS	ENSMUST00000105512.8	known	0.00	0	23	0	23	n	0.05	1	20	1	20	n	0.00	0	40	0	40	n	0.00	0	41	0	41	n	0.09	4	43	4	43	y	0.00	0	12	0	12	n	0.00	0	30	0	30	n	0.00	0	21	0	21	n	0.07	2	25	2	25	y	0.07	3	38	3	38	y	0.07	3	37	3	37	y	0.03	1	35	1	35	n	ENSMUSG00000039480.15	Nt5dc1	chr10	protein_coding	5'-nucleotidase domain containing 1
known_NIR_1552	chr10	34274194	34275734	-	34274191	34275734	A3SS	ENSMUST00000105512.8	known	0.73	27	10	27	10	y	0.83	24	5	24	5	y	0.88	43	6	43	6	y	0.76	42	13	42	13	y	0.79	42	11	42	11	y	0.75	9	3	9	3	y	0.72	31	12	31	12	y	0.88	23	3	23	3	y	0.79	19	5	19	5	y	0.70	28	12	28	12	y	0.69	18	8	18	8	y	0.94	32	2	32	2	y	ENSMUSG00000039480.15	Nt5dc1	chr10	protein_coding	5'-nucleotidase domain containing 1
known_NIR_1553	chr10	39402926;39405597	39405433;39408012	+	39402926;39406070	39405915;39408012	MXE	ENSMUST00000063091.13	known	0.81	6.5	1.5	9;4	1;2	n	0.72	6.5	2.5	9;4	1;4	n	0.75	6.0	2.0	4;8	2;2	y	0.50	1.0	1.0	1;1	0;2	n	0.56	7.5	6.0	11;4	4;8	y	0.70	3.5	1.5	5;2	2;1	n	0.93	7.0	0.5	3;11	0;1	n	0.75	3.0	1.0	4;2	0;2	n	0.78	7.0	2.0	2;12	0;4	n	0.64	4.5	2.5	3;6	1;4	n	0.81	6.5	1.5	5;8	2;1	n	0.82	4.5	1.0	1;8	1;1	n	ENSMUSG00000019843.15	Fyn	chr10	protein_coding	Fyn proto-oncogene
known_NIR_1554	chr10	39883093	39883256	-	39882090	39883256	A3SS	ENSMUST00000163705.3	known	0.00	0	64	0	64	n	0.00	0	44	0	44	n	0.00	0	37	0	37	n	0.05	3	59	3	59	y	0.05	3	54	3	54	y	0.00	0	31	0	31	n	0.00	0	66	0	66	n	0.05	3	53	3	53	y	0.03	2	57	2	57	y	0.02	2	87	2	87	y	0.07	4	57	4	57	y	0.00	0	60	0	60	n	ENSMUSG00000038522.8	Mfsd4b1	chr10	protein_coding	major facilitator superfamily domain containing 4B1
known_NIR_1555	chr10	39932626;39943655	39943624;39952560	-	39932626	39952560	cassetteExon	ENSMUST00000092566.8	known	0.02	2.0	117	1;3	117	n	0.03	2.0	72	1;3	72	n	0.00	0.0	37	0;0	37	n	0.01	1.5	164	0;3	164	n	0.00	0.0	131	0;0	131	n	0.00	0.0	26	0;0	26	n	0.02	2.5	140	2;3	140	y	0.00	0.0	37	0;0	37	n	0.03	2.0	69	3;1	69	n	0.02	3.5	146	2;5	146	y	0.00	0.0	70	0;0	70	n	0.01	2.0	141	0;4	141	n	ENSMUSG00000019838.12	Slc16a10	chr10	protein_coding	solute carrier family 16 (monocarboxylic acid transporters), member 10
known_NIR_1556	chr10	40009647	40017699	-	39956803	40017699	A3SS	ENSMUST00000092566.8	known	0.04	3	75	3	75	y	0.04	4	87	4	87	y	0.05	2	41	2	41	y	0.01	1	171	1	171	n	0.01	2	135	2	135	y	0.00	0	37	0	37	n	0.03	4	115	4	115	y	0.00	0	41	0	41	n	0.04	3	79	3	79	y	0.01	1	145	1	145	n	0.06	3	51	3	51	y	0.02	3	132	3	132	y	ENSMUSG00000019838.12	Slc16a10	chr10	protein_coding	solute carrier family 16 (monocarboxylic acid transporters), member 10
known_NIR_1557	chr10	40133289	40133562	-	40133289	40133572	A5SS	ENSMUST00000019982.9	known	0.15	2	11	2	11	y	0.00	0	18	0	18	n	0.09	3	32	3	32	y	0.00	0	25	0	25	n	0.00	0	20	0	20	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	18	0	18	n	0.04	1	26	1	26	n	0.00	0	17	0	17	n	0.00	0	26	0	26	n	ENSMUSG00000019837.9	Gtf3c6	chr10	protein_coding	general transcription factor IIIC, polypeptide 6, alpha
known_NIR_1558	chr10	40133289	40133562	-	40133289	40133575	A5SS	ENSMUST00000217537.2	known	0.03	2	58	2	58	y	0.00	0	59	0	59	n	0.04	3	82	3	82	y	0.00	0	68	0	68	n	0.00	0	61	0	61	n	0.00	0	62	0	62	n	0.00	0	77	0	77	n	0.00	0	30	0	30	n	0.00	0	51	0	51	n	0.02	1	58	1	58	n	0.00	0	62	0	62	n	0.00	0	48	0	48	n	ENSMUSG00000019837.9	Gtf3c6	chr10	protein_coding	general transcription factor IIIC, polypeptide 6, alpha
known_NIR_1559	chr10	40133289	40133572	-	40133289	40133575	A5SS	ENSMUST00000217537.2	known	0.16	11	58	11	58	y	0.23	18	59	18	59	y	0.28	32	82	32	82	y	0.27	25	68	25	68	y	0.25	20	61	20	61	y	0.14	10	62	10	62	y	0.14	13	77	13	77	y	0.27	11	30	11	30	y	0.26	18	51	18	51	y	0.31	26	58	26	58	y	0.22	17	62	17	62	y	0.35	26	48	26	48	y	ENSMUSG00000019837.9	Gtf3c6	chr10	protein_coding	general transcription factor IIIC, polypeptide 6, alpha
known_NIR_1560	chr10	40225717	40310300	+	40225717;40270396	40270321;40310300	ES	ENSMUST00000044672.11	known	0.00	0	5.5	0	7;4	n	-	-	-	-	-	-	0.07	1	13.0	1	15;11	n	0.00	0	2.5	0	3;2	n	0.21	2	7.5	2	7;8	y	0.00	0	4.0	0	2;6	n	0.00	0	6.0	0	6;6	n	0.17	1	5.0	1	4;6	n	0.00	0	3.5	0	2;5	n	0.00	0	4.0	0	4;4	n	0.00	0	2.0	0	2;2	n	0.00	0	11.5	0	11;12	n	ENSMUSG00000038481.14	Cdk19	chr10	protein_coding	cyclin-dependent kinase 19
known_NIR_1561	chr10	40225717	40310300	+	40270396	40310300	A5SS&ES	ENSMUST00000216736.2	known	0.00	0	4	0	4	n	-	-	-	-	-	-	0.08	1	11	1	11	n	0.00	0	2	0	2	n	0.20	2	8	2	8	y	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	12	0	12	n	ENSMUSG00000038481.14	Cdk19	chr10	protein_coding	cyclin-dependent kinase 19
known_NIR_1562	chr10	40312208;40330068	40330011;40342634	+	40312208	40342634	cassetteExon	ENSMUST00000216736.2	known	0.86	6.0	1	6;6	1	n	1.00	3.5	0	4;3	0	n	1.00	7.0	0	6;8	0	n	1.00	7.5	0	9;6	0	n	0.65	5.5	3	8;3	3	y	0.75	6.0	2	7;5	2	y	0.76	6.5	2	7;6	2	y	0.60	3.0	2	3;3	2	n	0.43	1.5	2	3;0	2	n	0.70	7.0	3	8;6	3	y	1.00	4.0	0	3;5	0	n	0.47	3.5	4	4;3	4	y	ENSMUSG00000038481.14	Cdk19	chr10	protein_coding	cyclin-dependent kinase 19
known_NIR_1563	chr10	40507776	40508907	+	40507776	40508934	A3SS	ENSMUST00000019977.8	known	0.00	0	27	0	27	n	0.00	0	27	0	27	n	0.00	0	34	0	34	n	0.02	1	48	1	48	n	0.00	0	49	0	49	n	0.00	0	22	0	22	n	0.03	1	34	1	34	n	0.00	0	31	0	31	n	0.08	2	24	2	24	y	0.00	0	48	0	48	n	0.04	2	48	2	48	y	0.00	0	33	0	33	n	ENSMUSG00000063428.9	Ddo	chr10	protein_coding	D-aspartate oxidase
known_NIR_1564	chr10	40513517	40515664	+	40513517	40523470	A3SS	ENSMUST00000019977.8	known	0.12	4	28	4	28	y	0.00	0	10	0	10	n	0.20	3	12	3	12	y	0.10	3	28	3	28	y	0.17	4	19	4	19	y	0.00	0	6	0	6	n	0.08	2	22	2	22	y	0.26	6	17	6	17	y	0.08	2	22	2	22	y	0.08	3	36	3	36	y	0.12	3	23	3	23	y	0.12	3	23	3	23	y	ENSMUSG00000063428.9	Ddo	chr10	protein_coding	D-aspartate oxidase
known_NIR_1565	chr10	40513517	40515664	+	40513517	40550582	A3SS	ENSMUST00000214102.2	known	0.40	4	6	4	6	y	0.00	0	10	0	10	n	0.43	3	4	3	4	n	0.38	3	5	3	5	n	0.33	4	8	4	8	y	0.00	0	7	0	7	n	0.33	2	4	2	4	n	0.50	6	6	6	6	y	0.25	2	6	2	6	n	0.18	3	14	3	14	y	0.30	3	7	3	7	y	0.60	3	2	3	2	n	ENSMUSG00000063428.9	Ddo	chr10	protein_coding	D-aspartate oxidase
known_NIR_1566	chr10	40513517	40550582	+	40513517	40523470	3pMXE	ENSMUST00000019977.8	known	0.18	6	28	6	28	y	0.50	10	10	10	10	y	0.25	4	12	4	12	y	0.15	5	28	5	28	y	0.30	8	19	8	19	y	0.54	7	6	7	6	y	0.15	4	22	4	22	y	0.26	6	17	6	17	y	0.21	6	22	6	22	y	0.28	14	36	14	36	y	0.23	7	23	7	23	y	0.08	2	23	2	23	y	ENSMUSG00000063428.9	Ddo	chr10	protein_coding	D-aspartate oxidase
known_NIR_1567	chr10	4098126	4105650	+	4098126	4105542	A3SS	ENSMUST00000117291.8	known	1.00	2	0	2	0	n	0.38	3	5	3	5	n	0.14	2	12	2	12	y	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.60	3	2	3	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.60	6	4	6	4	y	ENSMUSG00000040675.18	Mthfd1l	chr10	protein_coding	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like
known_NIR_1568	chr10	41364305	41364425	-	41364305	41364429	A5SS	ENSMUST00000019965.13	known	0.03	2	68	2	68	y	0.05	4	78	4	78	y	0.29	13	32	13	32	y	0.03	3	106	3	106	y	0.04	5	108	5	108	y	0.07	3	37	3	37	y	0.10	11	103	11	103	y	0.06	2	34	2	34	y	0.06	4	65	4	65	y	0.06	7	104	7	104	y	0.09	6	63	6	63	y	0.05	4	72	4	72	y	ENSMUSG00000019822.13	Smpd2	chr10	protein_coding	sphingomyelin phosphodiesterase 2, neutral
known_NIR_1569	chr10	41364971	41365271	-	41365020	41365271	A3SS	ENSMUST00000019965.13	known	0.00	0	100	0	100	n	0.00	0	68	0	68	n	0.00	0	52	0	52	n	0.00	0	97	0	97	n	0.00	0	90	0	90	n	0.00	0	32	0	32	n	0.00	0	117	0	117	n	0.00	0	52	0	52	n	0.00	0	66	0	66	n	0.00	0	107	0	107	n	0.00	0	70	0	70	n	0.03	3	104	3	104	y	ENSMUSG00000019822.13	Smpd2	chr10	protein_coding	sphingomyelin phosphodiesterase 2, neutral
known_NIR_1570	chr10	41365009	41365271	-	41365020	41365271	A3SS	ENSMUST00000019965.13	known	0.00	0	100	0	100	n	0.00	0	68	0	68	n	0.04	2	52	2	52	y	0.00	0	97	0	97	n	0.00	0	90	0	90	n	0.00	0	32	0	32	n	0.00	0	117	0	117	n	0.00	0	52	0	52	n	0.00	0	66	0	66	n	0.00	0	107	0	107	n	0.00	0	70	0	70	n	0.00	0	104	0	104	n	ENSMUSG00000019822.13	Smpd2	chr10	protein_coding	sphingomyelin phosphodiesterase 2, neutral
known_NIR_1571	chr10	41428466	41429412	-	41428466	41429069	A5SS	ENSMUST00000159868.2	known	0.00	0	6	0	6	n	0.27	3	8	3	8	y	0.30	3	7	3	7	y	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.17	2	10	2	10	y	0.00	0	2	0	2	n	0.20	2	8	2	8	y	0.21	3	11	3	11	y	0.38	3	5	3	5	n	0.00	0	6	0	6	n	ENSMUSG00000075225.16	Ccdc162	chr10	protein_coding	coiled-coil domain containing 162
known_NIR_1572	chr10	41428466	41429412	-	41428466;41429203	41429069;41429412	ES	ENSMUST00000219054.2	known	0.00	0	6.5	0	6;7	n	0.38	3	5.0	3	8;2	y	0.46	3	3.5	3	7;0	n	0.00	0	5.0	0	5;5	n	0.00	0	9.0	0	10;8	n	0.00	0	1.5	0	2;1	n	0.22	2	7.0	2	10;4	y	0.00	0	2.0	0	2;2	n	0.29	2	5.0	2	8;2	y	0.32	3	6.5	3	11;2	y	0.43	3	4.0	3	5;3	y	0.00	0	4.5	0	6;3	n	ENSMUSG00000075225.16	Ccdc162	chr10	protein_coding	coiled-coil domain containing 162
known_NIR_1573	chr10	41595903	41597553	-	41595903	41605327	A5SS	ENSMUST00000191498.2	known	0.78	7	2	7	2	n	1.00	7	0	7	0	n	1.00	4	0	4	0	n	0.93	14	1	14	1	n	1.00	14	0	14	0	n	1.00	4	0	4	0	n	1.00	21	0	21	0	n	1.00	8	0	8	0	n	1.00	5	0	5	0	n	1.00	12	0	12	0	n	0.86	6	1	6	1	n	0.79	11	3	11	3	y	ENSMUSG00000019813.17	Cep57l1	chr10	protein_coding	centrosomal protein 57-like 1
known_NIR_1574	chr10	41599934	41605327	-	41604710	41605327	3pMXE	ENSMUST00000187935.7	known	0.56	5	4	5	4	n	0.80	4	1	4	1	n	1.00	4	0	4	0	n	1.00	5	0	5	0	n	0.50	4	4	4	4	n	1.00	4	0	4	0	n	0.62	5	3	5	3	n	1.00	3	0	3	0	n	0.29	2	5	2	5	n	0.67	8	4	8	4	y	1.00	4	0	4	0	n	0.43	3	4	3	4	n	ENSMUSG00000019813.17	Cep57l1	chr10	protein_coding	centrosomal protein 57-like 1
known_NIR_1575	chr10	41599934;41604710	41604624;41605327	-	41599934	41605327	cassetteExon	ENSMUST00000105505.10	known	0.33	2.5	5	1;4	5	n	0.20	1.0	4	1;1	4	n	0.11	0.5	4	1;0	4	n	0.09	0.5	5	1;0	5	n	0.50	4.0	4	4;4	4	y	0.00	0.0	4	0;0	4	n	0.38	3.0	5	3;3	5	y	0.25	1.0	3	2;0	3	n	0.69	4.5	2	4;5	2	y	0.30	3.5	8	3;4	8	y	0.00	0.0	4	0;0	4	n	0.45	2.5	3	1;4	3	n	ENSMUSG00000019813.17	Cep57l1	chr10	protein_coding	centrosomal protein 57-like 1
known_NIR_1576	chr10	41763591	41770038	+	41687296	41770038	A5SS	ENSMUST00000099931.11	known	0.21	3	11	3	11	y	0.67	4	2	4	2	n	0.11	1	8	1	8	n	0.31	5	11	5	11	y	0.74	17	6	17	6	y	0.33	3	6	3	6	n	0.44	4	5	4	5	n	0.86	12	2	12	2	y	0.46	6	7	6	7	y	0.45	9	11	9	11	y	0.11	1	8	1	8	n	0.46	6	7	6	7	y	ENSMUSG00000038332.14	Sesn1	chr10	protein_coding	sestrin 1
known_NIR_1577	chr10	42123782	42150812	-	42073897	42150812	A3SS	ENSMUST00000105502.8	known	0.28	7	18	7	18	y	0.43	6	8	6	8	y	0.24	10	31	10	31	y	0.20	4	16	4	16	y	0.16	5	27	5	27	y	0.00	0	15	0	15	n	0.32	9	19	9	19	y	0.33	4	8	4	8	y	0.15	3	17	3	17	y	0.53	19	17	19	17	y	0.44	11	14	11	14	y	0.20	8	32	8	32	y	ENSMUSG00000048756.12	Foxo3	chr10	protein_coding	forkhead box O3
known_NIR_1578	chr10	42151537	42152522	-	42151541	42152522	A3SS	ENSMUST00000105502.8	known	0.00	0	18	0	18	n	0.00	0	7	0	7	n	0.07	2	27	2	27	y	0.00	0	17	0	17	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.00	0	19	0	19	n	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.10	3	28	3	28	y	0.12	2	14	2	14	y	0.00	0	25	0	25	n	ENSMUSG00000048756.12	Foxo3	chr10	protein_coding	forkhead box O3
known_NIR_1579	chr10	42378488	42401950	+	42378422	42401950	A5SS	ENSMUST00000105500.8	known	1.00	230	0	230	0	n	1.00	214	0	214	0	n	0.99	255	2	255	2	y	0.99	260	2	260	2	y	1.00	270	0	270	0	n	1.00	136	0	136	0	n	0.99	276	3	276	3	y	1.00	127	0	127	0	n	1.00	170	0	170	0	n	1.00	286	0	286	0	n	1.00	246	0	246	0	n	1.00	266	0	266	0	n	ENSMUSG00000019804.13	Snx3	chr10	protein_coding	sorting nexin 3
known_NIR_1580	chr10	42378488	42409145	+	42378488;42402045	42401950;42409145	ES	ENSMUST00000019939.12	known	0.02	5	244.5	5	230;259	y	0.01	2	235.0	2	214;256	y	0.00	0	259.5	0	255;264	n	0.02	4	252.5	4	260;245	y	0.00	1	307.0	1	270;344	n	0.01	1	138.0	1	136;140	n	0.01	2	288.0	2	276;300	y	0.00	0	141.5	0	127;156	n	0.01	2	195.0	2	170;220	y	0.00	1	302.0	1	286;318	n	0.02	4	258.0	4	246;270	y	0.01	2	293.0	2	266;320	y	ENSMUSG00000019804.13	Snx3	chr10	protein_coding	sorting nexin 3
known_NIR_1581	chr10	42378488	42409145	+	42402045	42409145	A5SS&ES	ENSMUST00000105500.8	known	0.02	5	259	5	259	y	0.01	2	256	2	256	y	0.00	0	264	0	264	n	0.02	4	245	4	245	y	0.00	1	344	1	344	n	0.01	1	140	1	140	n	0.01	2	300	2	300	y	0.00	0	156	0	156	n	0.01	2	220	2	220	y	0.00	1	318	1	318	n	0.01	4	270	4	270	y	0.01	2	320	2	320	y	ENSMUSG00000019804.13	Snx3	chr10	protein_coding	sorting nexin 3
known_NIR_1582	chr10	42688491	42688664	+	42688491	42688661	A3SS	ENSMUST00000019937.5	known	0.08	20	227	20	227	y	0.09	25	241	25	241	y	0.06	28	406	28	406	y	0.11	34	268	34	268	y	0.07	30	428	30	428	y	0.06	18	278	18	278	y	0.07	27	342	27	342	y	0.08	24	260	24	260	y	0.06	14	223	14	223	y	0.09	34	333	34	333	y	0.06	18	296	18	296	y	0.05	17	326	17	326	y	ENSMUSG00000019802.14	Sec63	chr10	protein_coding	SEC63-like (S. cerevisiae)
known_NIR_1583	chr10	43098009	43174795	+	43098056	43174795	A5SS	ENSMUST00000160823.8	known	0.12	2	14	2	14	y	0.00	0	12	0	12	n	0.04	1	27	1	27	n	0.00	0	15	0	15	n	0.00	0	21	0	21	n	0.00	0	14	0	14	n	0.00	0	24	0	24	n	0.06	1	17	1	17	n	0.00	0	18	0	18	n	0.00	0	20	0	20	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	ENSMUSG00000038240.14	Pdss2	chr10	protein_coding	prenyl (solanesyl) diphosphate synthase, subunit 2
known_NIR_1584	chr10	43271688	43278509	+	43271688	43289511	A3SS	ENSMUST00000095725.11	known	0.00	0	15	0	15	n	0.00	0	34	0	34	n	0.03	1	39	1	39	n	0.07	2	27	2	27	y	0.00	0	25	0	25	n	0.00	0	15	0	15	n	0.00	0	33	0	33	n	0.00	0	15	0	15	n	0.00	0	28	0	28	n	0.00	0	25	0	25	n	0.00	0	27	0	27	n	0.00	0	43	0	43	n	ENSMUSG00000038240.14	Pdss2	chr10	protein_coding	prenyl (solanesyl) diphosphate synthase, subunit 2
known_NIR_1585	chr10	43271688	43315795	+	43271688	43289511	A3SS&ES	ENSMUST00000159139.8	known	0.06	1	15	1	15	n	0.03	1	34	1	34	n	0.00	0	39	0	39	n	0.00	0	27	0	27	n	0.04	1	25	1	25	n	0.12	2	15	2	15	y	0.03	1	33	1	33	n	0.00	0	15	0	15	n	0.00	0	28	0	28	n	0.11	3	25	3	25	y	0.00	0	27	0	27	n	0.02	1	43	1	43	n	ENSMUSG00000038240.14	Pdss2	chr10	protein_coding	prenyl (solanesyl) diphosphate synthase, subunit 2
known_NIR_1586	chr10	43271688	43315795	+	43271688;43289543	43289511;43315795	ES	ENSMUST00000095725.11	known	0.05	1	20.5	1	15;26	n	0.03	1	33.0	1	34;32	n	0.00	0	36.5	0	39;34	n	0.00	0	30.5	0	27;34	n	0.04	1	26.0	1	25;27	n	0.12	2	15.0	2	15;15	y	0.03	1	34.0	1	33;35	n	0.00	0	15.5	0	15;16	n	0.00	0	25.5	0	28;23	n	0.08	3	33.5	3	25;42	y	0.00	0	25.5	0	27;24	n	0.02	1	40.0	1	43;37	n	ENSMUSG00000038240.14	Pdss2	chr10	protein_coding	prenyl (solanesyl) diphosphate synthase, subunit 2
known_NIR_1587	chr10	43409451	43416936	-	43409153	43416936	A3SS	ENSMUST00000147196.3	known	0.00	0	24	0	24	n	0.00	0	17	0	17	n	0.00	0	21	0	21	n	0.04	1	24	1	24	n	0.00	0	33	0	33	n	0.00	0	27	0	27	n	0.00	0	35	0	35	n	0.00	0	13	0	13	n	0.08	2	22	2	22	y	0.00	0	23	0	23	n	0.05	1	21	1	21	n	0.03	1	39	1	39	n	ENSMUSG00000019797.12	Mtres1	chr10	protein_coding	mitochondrial transcription rescue factor 1
known_NIR_1588	chr10	4377691;4378465	4378369;4379077	-	4377691	4379077	cassetteExon	ENSMUST00000042251.11	known	0.05	2.5	44	1;4	44	n	0.02	1.0	41	1;1	41	n	0.02	0.5	27	1;0	27	n	0.03	2.0	67	2;2	67	y	0.01	0.5	70	0;1	70	n	0.02	0.5	24	0;1	24	n	0.05	4.0	79	1;7	79	n	0.00	0.0	21	0;0	21	n	0.05	2.5	46	3;2	46	y	0.04	4.0	89	3;5	89	y	0.00	0.0	49	0;0	49	n	0.04	2.5	61	1;4	61	n	ENSMUSG00000019763.12	Rmnd1	chr10	protein_coding	required for meiotic nuclear division 1 homolog
known_NIR_1589	chr10	4377691;4378465	4378409;4379077	-	4377691	4379077	cassetteExon	ENSMUST00000042251.11	known	0.06	3.0	44	2;4	44	y	0.02	1.0	41	1;1	41	n	0.00	0.0	27	0;0	27	n	0.03	2.0	67	2;2	67	y	0.01	1.0	70	1;1	70	n	0.02	0.5	24	0;1	24	n	0.05	4.5	79	2;7	79	y	0.00	0.0	21	0;0	21	n	0.02	1.0	46	0;2	46	n	0.03	2.5	89	0;5	89	n	0.01	0.5	49	1;0	49	n	0.05	3.0	61	2;4	61	y	ENSMUSG00000019763.12	Rmnd1	chr10	protein_coding	required for meiotic nuclear division 1 homolog
known_NIR_1590	chr10	4379171	4382064	-	4379171	4382266	A5SS	ENSMUST00000042251.11	known	0.00	0	29	0	29	n	0.04	1	25	1	25	n	0.12	2	15	2	15	y	0.10	5	43	5	43	y	0.17	6	30	6	30	y	0.21	3	11	3	11	y	0.07	3	40	3	40	y	0.15	2	11	2	11	y	0.35	11	20	11	20	y	0.13	7	46	7	46	y	0.06	2	30	2	30	y	0.11	4	34	4	34	y	ENSMUSG00000019763.12	Rmnd1	chr10	protein_coding	required for meiotic nuclear division 1 homolog
known_NIR_1591	chr10	4384933	4400647	+	4384933	4389492	3pMXE	ENSMUST00000117489.8	known	0.00	0	17	0	17	n	0.00	0	17	0	17	n	0.00	0	20	0	20	n	0.00	0	20	0	20	n	0.03	1	28	1	28	n	0.00	0	7	0	7	n	0.00	0	17	0	17	n	0.00	0	12	0	12	n	0.00	0	17	0	17	n	0.06	1	17	1	17	n	0.18	3	14	3	14	y	0.00	0	35	0	35	n	ENSMUSG00000061759.16	Armt1	chr10	protein_coding	acidic residue methyltransferase 1
known_NIR_1592	chr10	4384933	4400647	+	4384933;4389736	4389492;4400647	ES	ENSMUST00000095893.11	known	0.00	0	19.0	0	17;21	n	0.00	0	18.5	0	17;20	n	0.00	0	27.5	0	20;35	n	0.00	0	18.5	0	20;17	n	0.03	1	29.5	1	28;31	n	0.00	0	9.5	0	7;12	n	0.00	0	23.5	0	17;30	n	0.00	0	13.5	0	12;15	n	0.00	0	15.0	0	17;13	n	0.05	1	20.5	1	17;24	n	0.17	3	14.5	3	14;15	y	0.00	0	38.0	0	35;41	n	ENSMUSG00000061759.16	Armt1	chr10	protein_coding	acidic residue methyltransferase 1
known_NIR_1593	chr10	44162193	44170592	+	44162193;44165986	44165859;44170592	ES	ENSMUST00000039286.5	known	0.00	0	118.5	0	114;123	n	0.00	0	105.5	0	106;105	n	0.01	1	123.0	1	129;117	n	0.01	2	155.5	2	136;175	y	0.01	2	179.0	2	164;194	y	0.00	0	64.0	0	56;72	n	0.01	1	152.0	1	139;165	n	0.00	0	77.0	0	70;84	n	0.00	0	112.5	0	106;119	n	0.01	1	165.0	1	151;179	n	0.00	0	110.0	0	97;123	n	0.01	2	141.5	2	138;145	y	ENSMUSG00000038160.8	Atg5	chr10	protein_coding	autophagy related 5
known_NIR_1594	chr10	45191375	45192579	+	45191375	45192527	A3SS	ENSMUST00000019994.14	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.54	7	6	7	6	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000019848.15	Popdc3	chr10	protein_coding	popeye domain containing 3
known_NIR_1595	chr10	45553359	45576673	+	45553359;45562829	45562698;45576673	ES	ENSMUST00000037044.13	known	0.00	0	6.0	0	5;7	n	0.00	0	7.0	0	4;10	n	0.00	0	15.0	0	15;15	n	0.00	0	6.5	0	5;8	n	0.08	1	12.0	1	18;6	n	0.00	0	4.5	0	5;4	n	0.00	0	8.5	0	8;9	n	0.00	0	5.0	0	4;6	n	0.00	0	7.0	0	11;3	n	0.00	0	7.0	0	6;8	n	0.29	2	5.0	2	6;4	y	0.00	0	9.0	0	9;9	n	ENSMUSG00000038822.16	Hace1	chr10	protein_coding	HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1
known_NIR_1596	chr10	45576771	45577107	+	45576771	45577050	A3SS	ENSMUST00000037044.13	known	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.18	2	9	2	9	y	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	ENSMUSG00000038822.16	Hace1	chr10	protein_coding	HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1
known_NIR_1597	chr10	4562155	4662313	+	4562155;4619332	4619223;4662313	ES	ENSMUST00000149195.8	known	0.43	3	4.0	3	3;5	y	0.00	0	1.0	0	1;1	n	1.00	2	0.0	2	0;0	n	0.17	1	5.0	1	4;6	n	0.00	0	3.0	0	4;2	n	0.67	1	0.5	1	0;1	n	0.00	0	1.0	0	1;1	n	0.57	2	1.5	2	1;2	n	0.00	0	5.5	0	7;4	n	0.00	0	3.5	0	3;4	n	0.00	0	3.5	0	5;2	n	0.15	1	5.5	1	7;4	n	ENSMUSG00000019768.17	Esr1	chr10	protein_coding	estrogen receptor 1 (alpha)
known_NIR_1598	chr10	4660294	4662313	+	4619332	4662313	A5SS	ENSMUST00000149195.8	known	0.50	5	5	5	5	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.33	3	6	3	6	n	0.33	1	2	1	2	n	0.67	2	1	2	1	n	0.67	2	1	2	1	n	0.33	1	2	1	2	n	0.43	3	4	3	4	n	0.43	3	4	3	4	n	0.33	1	2	1	2	n	0.56	5	4	5	4	n	ENSMUSG00000019768.17	Esr1	chr10	protein_coding	estrogen receptor 1 (alpha)
known_NIR_1599	chr10	4993753	4997531	-	4993753;4995334	4995266;4997531	ES	ENSMUST00000215295.2	known	0.70	7	3.0	7	2;4	y	0.55	6	5.0	6	4;6	y	0.48	6	6.5	6	6;7	y	0.21	3	11.0	3	13;9	y	0.19	6	25.0	6	21;29	y	0.10	1	9.0	1	11;7	n	0.47	9	10.0	9	9;11	y	0.47	8	9.0	8	9;9	y	0.50	5	5.0	5	4;6	y	0.43	9	12.0	9	16;8	y	0.31	2	4.5	2	4;5	y	0.37	9	15.5	9	17;14	y	ENSMUSG00000096054.4	Syne1	chr10	protein_coding	spectrin repeat containing, nuclear envelope 1
known_NIR_1600	chr10	5011551	5018807	-	5011551	5022037	A5SS	ENSMUST00000215295.2	known	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.00	0	27	0	27	n	0.00	0	10	0	10	n	0.10	2	19	2	19	y	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	18	0	18	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	ENSMUSG00000096054.4	Syne1	chr10	protein_coding	spectrin repeat containing, nuclear envelope 1
known_NIR_1601	chr10	51356854	51357002	+	51356849	51357002	A5SS	ENSMUST00000102894.6	known	-	-	-	-	-	-	0.00	0	5	0	5	n	0.18	3	14	3	14	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.14	1	6	1	6	n	0.43	3	4	3	4	n	-	-	-	-	-	-	1.00	2	0	2	0	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	ENSMUSG00000112023.2	Lilr4b	chr10	protein_coding	leukocyte immunoglobulin-like receptor, subfamily B, member 4B
known_NIR_1602	chr10	51357037	51357663	+	51357037	51357236	A3SS	ENSMUST00000219178.2	known	-	-	-	-	-	-	0.50	1	1	1	1	n	0.36	4	7	4	7	y	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.33	1	2	1	2	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000112023.2	Lilr4b	chr10	protein_coding	leukocyte immunoglobulin-like receptor, subfamily B, member 4B
known_NIR_1603	chr10	51357037	51357663	+	51357037;51357520	51357236;51357663	ES	ENSMUST00000102894.6	known	-	-	-	-	-	-	0.33	1	2.0	1	1;3	n	0.33	4	8.0	4	7;9	y	0.00	0	1.0	0	2;0	n	0.33	1	2.0	1	1;3	n	0.29	1	2.5	1	2;3	n	0.20	1	4.0	1	4;4	n	0.00	0	0.5	0	1;0	n	0.00	0	2.0	0	3;1	n	0.00	0	1.5	0	3;0	n	0.00	0	1.5	0	3;0	n	0.00	0	1.5	0	2;1	n	ENSMUSG00000112023.2	Lilr4b	chr10	protein_coding	leukocyte immunoglobulin-like receptor, subfamily B, member 4B
known_NIR_1604	chr10	51357037	51357763	+	51357037	51357236	A3SS&ES	ENSMUST00000102894.6	known	-	-	-	-	-	-	0.50	1	1	1	1	n	0.30	3	7	3	7	y	0.50	2	2	2	2	n	0.67	2	1	2	1	n	0.33	1	2	1	2	n	0.33	2	4	2	4	n	0.00	0	1	0	1	n	0.40	2	3	2	3	n	0.00	0	3	0	3	n	0.40	2	3	2	3	n	0.00	0	2	0	2	n	ENSMUSG00000112023.2	Lilr4b	chr10	protein_coding	leukocyte immunoglobulin-like receptor, subfamily B, member 4B
known_NIR_1605	chr10	51359974	51360542	+	51359974	51360613	A3SS	ENSMUST00000102894.6	known	1.00	1	0	1	0	n	0.00	0	5	0	5	n	0.09	2	20	2	20	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000112023.2	Lilr4b	chr10	protein_coding	leukocyte immunoglobulin-like receptor, subfamily B, member 4B
known_NIR_1606	chr10	51359974	51360613	+	51359974	51360346	A3SS&ES	ENSMUST00000219262.2	known	-	-	-	-	-	-	1.00	5	0	5	0	n	0.91	20	2	20	2	y	1.00	3	0	3	0	n	0.86	6	1	6	1	n	0.67	2	1	2	1	n	1.00	5	0	5	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	n	-	-	-	-	-	-	1.00	5	0	5	0	n	ENSMUSG00000112023.2	Lilr4b	chr10	protein_coding	leukocyte immunoglobulin-like receptor, subfamily B, member 4B
known_NIR_1607	chr10	51359974;51360383	51360346;51360613	+	51359974	51360613	cassetteExon	ENSMUST00000102894.6	known	-	-	-	-	-	-	0.00	0.0	5	0;0	5	n	0.11	2.5	20	2;3	20	y	0.00	0.0	3	0;0	3	n	0.14	1.0	6	1;1	6	n	0.20	0.5	2	1;0	2	n	0.00	0.0	5	0;0	5	n	0.00	0.0	1	0;0	1	n	1.00	0.5	0	0;1	0	n	0.00	0.0	2	0;0	2	n	-	-	-	-	-	-	0.00	0.0	5	0;0	5	n	ENSMUSG00000112023.2	Lilr4b	chr10	protein_coding	leukocyte immunoglobulin-like receptor, subfamily B, member 4B
known_NIR_1608	chr10	51360665	51361312	+	51360665	51361809	A3SS	ENSMUST00000102894.6	known	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.21	7	26	7	26	y	-	-	-	-	-	-	0.25	2	6	2	6	n	0.00	0	3	0	3	n	0.44	4	5	4	5	n	0.17	1	5	1	5	n	0.60	3	2	3	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	ENSMUSG00000112023.2	Lilr4b	chr10	protein_coding	leukocyte immunoglobulin-like receptor, subfamily B, member 4B
known_NIR_1609	chr10	51360713	51361809	+	51360665	51361809	A5SS	ENSMUST00000102894.6	known	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.07	2	26	2	26	y	-	-	-	-	-	-	0.14	1	6	1	6	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	ENSMUSG00000112023.2	Lilr4b	chr10	protein_coding	leukocyte immunoglobulin-like receptor, subfamily B, member 4B
known_NIR_1610	chr10	51361852	51361984	+	51361876	51361984	A5SS	ENSMUST00000102894.6	known	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.11	3	25	3	25	y	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.18	2	9	2	9	y	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.33	2	4	2	4	n	0.25	2	6	2	6	n	ENSMUSG00000112023.2	Lilr4b	chr10	protein_coding	leukocyte immunoglobulin-like receptor, subfamily B, member 4B
known_NIR_1611	chr10	51370989	51372090	+	51370941	51372090	A5SS	ENSMUST00000219696.2	known	0.00	0	8	0	8	n	0.14	3	19	3	19	y	0.04	2	50	2	50	y	0.00	0	9	0	9	n	0.08	3	36	3	36	y	0.00	0	3	0	3	n	0.00	0	17	0	17	n	0.12	2	14	2	14	y	0.14	1	6	1	6	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.14	1	6	1	6	n	ENSMUSG00000062593.18	Gm49339	chr10	protein_coding	predicted gene, 49339
known_NIR_1612	chr10	52109931	52160199	+	52109931;52138035	52137823;52160199	ES	ENSMUST00000069004.14	known	0.00	0	4.5	0	4;5	n	0.00	0	2.0	0	3;1	n	0.00	0	6.0	0	3;9	n	0.00	0	0.5	0	0;1	n	0.31	4	9.0	4	10;8	y	0.00	0	2.0	0	3;1	n	0.00	0	6.0	0	8;4	n	0.31	2	4.5	2	6;3	y	0.00	0	3.0	0	3;3	n	0.43	3	4.0	3	5;3	y	0.00	0	3.5	0	2;5	n	0.31	2	4.5	2	4;5	y	ENSMUSG00000019891.16	Dcbld1	chr10	protein_coding	discoidin, CUB  and LCCL domain containing 1
known_NIR_1613	chr10	52230843;52233461	52233438;52234869	-	52230843	52234869	cassetteExon	ENSMUST00000020008.10	known	0.12	4.5	34	4;5	34	y	0.14	2.5	15	2;3	15	y	0.03	2.0	58	2;2	58	y	0.07	3.0	38	3;3	38	y	0.08	4.0	44	4;4	44	y	0.03	1.0	28	1;1	28	n	0.15	7.5	41	7;8	41	y	0.00	0.0	29	0;0	29	n	0.04	1.0	26	1;1	26	n	0.05	2.5	44	3;2	44	y	0.00	0.0	42	0;0	42	n	0.03	1.0	39	1;1	39	n	ENSMUSG00000019861.16	Gopc	chr10	protein_coding	golgi associated PDZ and coiled-coil motif containing
known_NIR_1614	chr10	53485110	53487448	-	53439553	53487448	A3SS	ENSMUST00000237608.2	known	0.67	2	1	2	1	n	0.00	0	3	0	3	n	0.38	3	5	3	5	n	0.14	1	6	1	6	n	0.57	8	6	8	6	y	0.50	2	2	2	2	n	0.33	2	4	2	4	n	0.00	0	2	0	2	n	0.80	4	1	4	1	n	0.33	3	6	3	6	n	0.00	0	4	0	4	n	0.57	4	3	4	3	n	ENSMUSG00000058298.11	Mcm9	chr10	protein_coding	minichromosome maintenance 9 homologous recombination repair factor
known_NIR_1615	chr10	53492211	53496230	-	53492148	53496230	A3SS	ENSMUST00000237608.2	known	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.17	2	10	2	10	y	0.00	0	5	0	5	n	0.00	0	16	0	16	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.33	2	4	2	4	n	0.00	0	5	0	5	n	ENSMUSG00000058298.11	Mcm9	chr10	protein_coding	minichromosome maintenance 9 homologous recombination repair factor
known_NIR_1616	chr10	53811108	53890511	-	53811108	53853119	5pMXE	ENSMUST00000219234.2	known	0.00	0	269	0	269	n	0.01	1	193	1	193	n	0.00	1	338	1	338	n	0.01	2	362	2	362	y	0.00	1	344	1	344	n	0.00	0	194	0	194	n	0.00	0	347	0	347	n	0.00	0	242	0	242	n	0.00	0	190	0	190	n	0.01	2	350	2	350	y	0.00	1	225	1	225	n	0.00	0	383	0	383	n	ENSMUSG00000003746.17	Man1a	chr10	protein_coding	mannosidase 1, alpha
known_NIR_1617	chr10	53811108	53890511	-	53811108;53853213	53853119;53890511	ES	ENSMUST00000003843.16	known	0.00	0	277.0	0	269;285	n	0.01	1	195.5	1	193;198	n	0.00	1	368.5	1	338;399	n	0.01	2	379.5	2	362;397	y	0.00	1	375.5	1	344;407	n	0.00	0	202.0	0	194;210	n	0.00	0	357.0	0	347;367	n	0.00	0	249.5	0	242;257	n	0.00	0	198.5	0	190;207	n	0.01	2	375.0	2	350;400	y	0.00	1	222.5	1	225;220	n	0.00	0	395.5	0	383;408	n	ENSMUSG00000003746.17	Man1a	chr10	protein_coding	mannosidase 1, alpha
known_NIR_1618	chr10	53811108	53890511	-	53853213	53890511	3pMXE	ENSMUST00000146483.8	known	0.00	0	285	0	285	n	0.01	1	198	1	198	n	0.00	1	399	1	399	n	0.01	2	397	2	397	y	0.00	1	407	1	407	n	0.00	0	210	0	210	n	0.00	0	367	0	367	n	0.00	0	257	0	257	n	0.00	0	207	0	207	n	0.00	2	400	2	400	y	0.00	1	220	1	220	n	0.00	0	408	0	408	n	ENSMUSG00000003746.17	Man1a	chr10	protein_coding	mannosidase 1, alpha
known_NIR_1619	chr10	53951366	53951600	-	53951366	53951622	A5SS	ENSMUST00000003843.16	known	0.01	1	124	1	124	n	0.01	1	104	1	104	n	0.05	11	226	11	226	y	0.01	2	275	2	275	y	0.01	2	276	2	276	y	0.03	4	120	4	120	y	0.03	5	191	5	191	y	0.04	6	143	6	143	y	0.00	0	131	0	131	n	0.02	5	250	5	250	y	0.03	4	128	4	128	y	0.01	2	250	2	250	y	ENSMUSG00000003746.17	Man1a	chr10	protein_coding	mannosidase 1, alpha
known_NIR_1620	chr10	53951366	53952559	-	53951366	53951600	5pMXE	ENSMUST00000105470.9	known	0.67	2	1	2	1	n	0.50	1	1	1	1	n	0.35	6	11	6	11	y	0.00	0	2	0	2	n	0.50	2	2	2	2	n	0.43	3	4	3	4	n	0.17	1	5	1	5	n	0.40	4	6	4	6	y	1.00	1	0	1	0	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000003746.17	Man1a	chr10	protein_coding	mannosidase 1, alpha
known_NIR_1621	chr10	53951366	53952559	-	53951366	53951622	5pMXE	ENSMUST00000003843.16	known	0.02	2	124	2	124	y	0.01	1	104	1	104	n	0.03	6	226	6	226	y	0.00	0	275	0	275	n	0.01	2	276	2	276	y	0.02	3	120	3	120	y	0.01	1	191	1	191	n	0.03	4	143	4	143	y	0.01	1	131	1	131	n	0.00	1	250	1	250	n	0.00	0	128	0	128	n	0.00	0	250	0	250	n	ENSMUSG00000003746.17	Man1a	chr10	protein_coding	mannosidase 1, alpha
known_NIR_1622	chr10	57362697;57367025	57366954;57371994	+	57362697	57371994	cassetteExon	ENSMUST00000220353.2	known	0.07	2.5	34	1;4	34	n	0.06	1.5	23	0;3	23	n	0.08	2.5	29	3;2	29	y	0.06	3.5	55	2;5	55	y	0.05	3.5	63	1;6	63	n	0.05	0.5	10	1;0	10	n	0.07	2.5	33	1;4	33	n	0.02	0.5	32	0;1	32	n	0.10	3.0	28	2;4	28	y	0.06	2.5	39	3;2	39	y	0.08	2.0	24	0;4	24	n	0.12	4.0	30	2;6	30	y	ENSMUSG00000019878.9	Hsf2	chr10	protein_coding	heat shock factor 2
known_NIR_1623	chr10	57378806	57380678	+	57378806	57380646	A3SS	ENSMUST00000220353.2	known	1.00	50	0	50	0	n	0.98	42	1	42	1	n	1.00	37	0	37	0	n	0.99	89	1	89	1	n	1.00	87	0	87	0	n	1.00	24	0	24	0	n	1.00	87	0	87	0	n	0.98	40	1	40	1	n	1.00	38	0	38	0	n	0.97	76	2	76	2	y	1.00	46	0	46	0	n	1.00	75	0	75	0	n	ENSMUSG00000019878.9	Hsf2	chr10	protein_coding	heat shock factor 2
known_NIR_1624	chr10	57382398;57385210	57385157;57387540	+	57382398	57387540	cassetteExon	ENSMUST00000079833.6	known	0.58	36.0	26	35;37	26	y	0.60	24.0	16	28;20	16	y	0.32	10.0	21	10;10	21	y	0.54	30.0	26	30;30	26	y	0.55	43.5	35	43;44	35	y	0.72	15.5	6	18;13	6	y	0.39	32.0	50	33;31	50	y	0.66	23.0	12	20;26	12	y	0.58	22.0	16	25;19	16	y	0.48	32.0	34	38;26	34	y	0.41	23.0	33	27;19	33	y	0.59	41.5	29	47;36	29	y	ENSMUSG00000019878.9	Hsf2	chr10	protein_coding	heat shock factor 2
known_NIR_1625	chr10	57400083	57400416	-	57400194	57400416	A3SS	ENSMUST00000020027.11	known	0.00	0	183	0	183	n	0.00	0	127	0	127	n	0.00	0	437	0	437	n	0.00	0	322	0	322	n	0.00	1	417	1	417	n	0.00	0	256	0	256	n	0.00	0	317	0	317	n	0.00	0	296	0	296	n	0.00	0	211	0	211	n	0.00	0	334	0	334	n	0.00	0	194	0	194	n	0.01	3	283	3	283	y	ENSMUSG00000019877.11	Serinc1	chr10	protein_coding	serine incorporator 1
known_NIR_1626	chr10	57400495	57401462	-	57400495	57401421	A5SS	ENSMUST00000020027.11	known	0.00	0	186	0	186	n	0.00	0	131	0	131	n	0.00	1	456	1	456	n	0.00	0	272	0	272	n	0.00	0	391	0	391	n	0.00	0	239	0	239	n	0.00	0	343	0	343	n	0.00	0	287	0	287	n	0.01	2	225	2	225	y	0.00	0	309	0	309	n	0.00	1	203	1	203	n	0.00	0	309	0	309	n	ENSMUSG00000019877.11	Serinc1	chr10	protein_coding	serine incorporator 1
known_NIR_1627	chr10	58091704	58092569	+	58091704	58092642	A3SS	ENSMUST00000057659.14	known	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.00	0	18	0	18	n	0.10	2	19	2	19	y	0.06	1	16	1	16	n	0.10	1	9	1	9	n	0.05	1	19	1	19	n	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	ENSMUSG00000038039.14	Gcc2	chr10	protein_coding	GRIP and coiled-coil domain containing 2
known_NIR_1628	chr10	58092718	58094063	+	58092726	58094063	A5SS	ENSMUST00000057659.14	known	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	17	0	17	n	0.00	0	17	0	17	n	0.04	1	25	1	25	n	0.07	1	14	1	14	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.17	2	10	2	10	y	0.00	0	5	0	5	n	0.00	0	16	0	16	n	ENSMUSG00000038039.14	Gcc2	chr10	protein_coding	GRIP and coiled-coil domain containing 2
known_NIR_1629	chr10	58207521	58234843	+	58159509	58234843	A5SS	ENSMUST00000020078.14	known	0.00	0	16	0	16	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.17	2	10	2	10	y	0.00	0	27	0	27	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.14	1	6	1	6	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	ENSMUSG00000019920.19	Lims1	chr10	protein_coding	LIM and senescent cell antigen-like domains 1
known_NIR_1630	chr10	58254296;58254657	58254469;58257276	+	58254296	58257276	cassetteExon	ENSMUST00000020078.14	known	0.00	0.0	18	0;0	18	n	0.00	0.0	14	0;0	14	n	0.00	0.0	35	0;0	35	n	0.00	0.0	20	0;0	20	n	0.00	0.0	26	0;0	26	n	0.00	0.0	11	0;0	11	n	0.08	3.0	35	3;3	35	y	0.00	0.0	16	0;0	16	n	0.00	0.0	10	0;0	10	n	0.00	0.0	26	0;0	26	n	0.00	0.0	12	0;0	12	n	0.00	0.0	15	0;0	15	n	ENSMUSG00000019920.19	Lims1	chr10	protein_coding	LIM and senescent cell antigen-like domains 1
known_NIR_1631	chr10	58334497	58334991	+	58333884	58334991	A5SS	ENSMUST00000036576.10	known	0.90	9	1	9	1	n	1.00	10	0	10	0	n	1.00	2	0	2	0	n	0.67	6	3	6	3	n	0.71	5	2	5	2	n	1.00	3	0	3	0	n	0.62	5	3	5	3	n	0.82	9	2	9	2	y	0.67	2	1	2	1	n	1.00	12	0	12	0	n	0.82	9	2	9	2	y	0.60	3	2	3	2	n	ENSMUSG00000038010.10	Ccdc138	chr10	protein_coding	coiled-coil domain containing 138
known_NIR_1632	chr10	58335241	58336019	+	58335241	58343343	A3SS	ENSMUST00000036576.10	known	0.57	4	3	4	3	n	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.67	2	1	2	1	n	0.47	8	9	8	9	y	0.22	2	7	2	7	n	0.29	4	10	4	10	y	0.29	2	5	2	5	n	0.56	5	4	5	4	n	0.39	7	11	7	11	y	0.67	8	4	8	4	y	0.38	5	8	5	8	y	ENSMUSG00000038010.10	Ccdc138	chr10	protein_coding	coiled-coil domain containing 138
known_NIR_1633	chr10	59000766	59002326	-	58977562	59002326	A3SS	ENSMUST00000220156.2	known	1.00	30	0	30	0	n	1.00	25	0	25	0	n	1.00	62	0	62	0	n	1.00	29	0	29	0	n	1.00	48	0	48	0	n	1.00	25	0	25	0	n	1.00	39	0	39	0	n	1.00	20	0	20	0	n	0.95	18	1	18	1	n	0.94	48	3	48	3	y	1.00	23	0	23	0	n	1.00	51	0	51	0	n	ENSMUSG00000019917.11	Septin10	chr10	protein_coding	septin 10
known_NIR_1634	chr10	59188081;59191242	59191172;59197683	+	59188081;59190232	59190162;59197683	MXE	ENSMUST00000009789.15	known	0.74	18.5	6.5	24;13	5;8	y	0.80	16.5	4.0	19;14	4;4	y	0.43	20.0	26.5	20;20	28;25	y	0.84	23.0	4.5	20;26	4;5	y	0.67	24.0	12.0	19;29	13;11	y	0.40	6.0	9.0	6;6	8;10	y	0.55	16.0	13.0	17;15	19;7	y	0.58	7.0	5.0	8;6	7;3	y	0.62	5.0	3.0	5;5	1;5	n	0.78	19.5	5.5	16;23	1;10	n	0.89	12.0	1.5	10;14	2;1	n	0.72	9.0	3.5	8;10	2;5	y	ENSMUSG00000019916.15	P4ha1	chr10	protein_coding	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide
known_NIR_1635	chr10	59252335	59257194	+	59252335	59257285	A3SS	ENSMUST00000009790.14	known	0.00	0	209	0	209	n	0.01	2	249	2	249	y	0.01	2	372	2	372	y	0.00	0	202	0	202	n	0.00	0	354	0	354	n	0.01	2	259	2	259	y	0.01	5	341	5	341	y	0.01	2	220	2	220	y	0.00	0	204	0	204	n	0.02	5	263	5	263	y	0.01	3	197	3	197	y	0.00	0	256	0	256	n	ENSMUSG00000009646.14	Pla2g12b	chr10	protein_coding	phospholipase A2, group XIIB
known_NIR_1636	chr10	59586369	59603960	+	59586369	59592528	3pMXE	ENSMUST00000167612.2	known	1.00	41	0	41	0	n	1.00	36	0	36	0	n	1.00	84	0	84	0	n	1.00	39	0	39	0	n	1.00	65	0	65	0	n	1.00	31	0	31	0	n	0.83	59	12	59	12	y	1.00	35	0	35	0	n	1.00	34	0	34	0	n	1.00	70	0	70	0	n	1.00	42	0	42	0	n	1.00	52	0	52	0	n	ENSMUSG00000020111.16	Micu1	chr10	protein_coding	mitochondrial calcium uptake 1
known_NIR_1637	chr10	59586369;59592539	59592528;59603960	+	59586369	59603960	cassetteExon	ENSMUST00000165563.8	known	0.00	0.0	41	0;0	41	n	0.00	0.0	36	0;0	36	n	0.00	0.0	84	0;0	84	n	0.00	0.0	39	0;0	39	n	0.00	0.0	65	0;0	65	n	0.00	0.0	31	0;0	31	n	0.15	10.5	59	12;9	59	y	0.00	0.0	35	0;0	35	n	0.00	0.0	34	0;0	34	n	0.00	0.0	70	0;0	70	n	0.00	0.0	42	0;0	42	n	0.00	0.0	52	0;0	52	n	ENSMUSG00000020111.16	Micu1	chr10	protein_coding	mitochondrial calcium uptake 1
known_NIR_1638	chr10	59598478	59603960	+	59586369	59603960	A5SS	ENSMUST00000165563.8	known	0.00	0	41	0	41	n	0.08	3	36	3	36	y	0.00	0	84	0	84	n	0.07	3	39	3	39	y	0.00	0	65	0	65	n	0.00	0	31	0	31	n	0.00	0	59	0	59	n	0.00	0	35	0	35	n	0.00	0	34	0	34	n	0.00	0	70	0	70	n	0.00	0	42	0	42	n	0.00	0	52	0	52	n	ENSMUSG00000020111.16	Micu1	chr10	protein_coding	mitochondrial calcium uptake 1
known_NIR_1639	chr10	59732317	59733313	+	59732269	59733313	A5SS	ENSMUST00000147914.8	known	0.54	29	25	29	25	y	0.54	27	23	27	23	y	0.55	32	26	32	26	y	0.45	26	32	26	32	y	0.54	46	39	46	39	y	0.48	20	22	20	22	y	0.35	23	42	23	42	y	0.45	20	24	20	24	y	0.45	31	38	31	38	y	0.31	23	51	23	51	y	0.42	30	42	30	42	y	0.35	24	44	24	44	y	ENSMUSG00000020109.14	Dnajb12	chr10	protein_coding	DnaJ heat shock protein family (Hsp40) member B12
known_NIR_1640	chr10	59732323	59733313	+	59732269	59733313	A5SS	ENSMUST00000147914.8	known	0.71	62	25	62	25	y	0.60	34	23	34	23	y	0.70	62	26	62	26	y	0.66	62	32	62	32	y	0.63	67	39	67	39	y	0.57	29	22	29	22	y	0.60	64	42	64	42	y	0.65	44	24	44	24	y	0.52	41	38	41	38	y	0.56	66	51	66	51	y	0.51	43	42	43	42	y	0.58	60	44	60	44	y	ENSMUSG00000020109.14	Dnajb12	chr10	protein_coding	DnaJ heat shock protein family (Hsp40) member B12
known_NIR_1641	chr10	59732323	59733313	+	59732317	59733313	A5SS	ENSMUST00000131810.8	known	0.68	62	29	62	29	y	0.56	34	27	34	27	y	0.66	62	32	62	32	y	0.70	62	26	62	26	y	0.59	67	46	67	46	y	0.59	29	20	29	20	y	0.74	64	23	64	23	y	0.69	44	20	44	20	y	0.57	41	31	41	31	y	0.74	66	23	66	23	y	0.59	43	30	43	30	y	0.71	60	24	60	24	y	ENSMUSG00000020109.14	Dnajb12	chr10	protein_coding	DnaJ heat shock protein family (Hsp40) member B12
known_NIR_1642	chr10	59824660	59826655	-	59824660	59826181	5pMXE	ENSMUST00000182925.2	known	1.00	153	0	153	0	n	0.99	142	2	142	2	y	0.97	186	5	186	5	y	1.00	118	0	118	0	n	0.99	158	1	158	1	n	0.99	113	1	113	1	n	0.99	181	1	181	1	n	1.00	112	0	112	0	n	1.00	132	0	132	0	n	1.00	199	0	199	0	n	1.00	169	0	169	0	n	1.00	131	0	131	0	n	ENSMUSG00000020107.11	Anapc16	chr10	protein_coding	anaphase promoting complex subunit 16
known_NIR_1643	chr10	59824660	59826655	-	59826396	59826655	3pMXE	ENSMUST00000183093.2	known	1.00	153	0	153	0	n	0.99	142	1	142	1	n	0.99	186	2	186	2	y	0.98	118	2	118	2	y	0.99	158	1	158	1	n	0.97	113	3	113	3	y	0.98	181	4	181	4	y	1.00	112	0	112	0	n	1.00	132	0	132	0	n	0.99	199	2	199	2	y	0.99	169	2	169	2	y	0.99	131	1	131	1	n	ENSMUSG00000020107.11	Anapc16	chr10	protein_coding	anaphase promoting complex subunit 16
known_NIR_1644	chr10	59824660;59826396	59826181;59826655	-	59824660	59826655	cassetteExon	ENSMUST00000182898.8	known	0.00	0.0	153	0;0	153	n	0.01	1.5	142	2;1	142	n	0.02	3.5	186	5;2	186	y	0.01	1.0	118	0;2	118	n	0.01	1.0	158	1;1	158	n	0.02	2.0	113	1;3	113	n	0.01	2.5	181	1;4	181	n	0.00	0.0	112	0;0	112	n	0.00	0.0	132	0;0	132	n	0.01	1.0	199	0;2	199	n	0.01	1.0	169	0;2	169	n	0.00	0.5	131	0;1	131	n	ENSMUSG00000020107.11	Anapc16	chr10	protein_coding	anaphase promoting complex subunit 16
known_NIR_1645	chr10	59826729	59838240	-	59826729;59832436	59832270;59838240	ES	ENSMUST00000020307.11	known	0.05	4	75.5	4	113;38	y	0.03	2	67.5	2	104;31	y	0.00	0	107.5	0	173;42	n	0.08	6	73.0	6	108;38	y	0.02	2	98.5	2	144;53	y	0.03	2	70.5	2	99;42	y	0.04	5	115.0	5	182;48	y	0.00	0	52.0	0	87;17	n	0.00	0	80.5	0	125;36	n	0.04	4	107.5	4	164;51	y	0.02	2	82.5	2	132;33	y	0.01	1	78.0	1	123;33	n	ENSMUSG00000020107.11	Anapc16	chr10	protein_coding	anaphase promoting complex subunit 16
known_NIR_1646	chr10	59826729	59838778	-	59826729;59832436	59832270;59838778	ES	ENSMUST00000182898.8	known	0.04	4	85.5	4	113;58	y	0.05	4	71.0	4	104;38	y	0.15	21	117.0	21	173;61	y	0.13	11	75.5	11	108;43	y	0.07	9	111.0	9	144;78	y	0.13	10	69.0	10	99;39	y	0.08	10	121.0	10	182;60	y	0.14	10	62.5	10	87;38	y	0.09	8	76.5	8	125;28	y	0.10	13	111.5	13	164;59	y	0.03	3	93.5	3	132;55	y	0.05	5	86.5	5	123;50	y	ENSMUSG00000020107.11	Anapc16	chr10	protein_coding	anaphase promoting complex subunit 16
known_NIR_1647	chr10	59826729	59838778	-	59826729;59838289	59838240;59838778	ES	ENSMUST00000182116.8	known	0.17	4	19.0	4	4;34	y	0.26	4	11.5	4	2;21	y	0.56	21	16.5	21	0;33	n	0.38	11	18.0	11	6;30	y	0.27	9	24.5	9	2;47	y	0.43	10	13.5	10	2;25	y	0.38	10	16.0	10	5;27	y	0.74	10	3.5	10	0;7	n	0.37	8	13.5	8	0;27	n	0.38	13	21.0	13	4;38	y	0.17	3	15.0	3	2;28	y	0.23	5	16.5	5	1;32	n	ENSMUSG00000020107.11	Anapc16	chr10	protein_coding	anaphase promoting complex subunit 16
known_NIR_1648	chr10	59826729;59838289	59838240;59838778	-	59826729;59832436	59832270;59838778	MXE	ENSMUST00000182898.8	known	0.18	19.0	85.5	4;34	113;58	y	0.14	11.5	71.0	2;21	104;38	y	0.12	16.5	117.0	0;33	173;61	n	0.19	18.0	75.5	6;30	108;43	y	0.18	24.5	111.0	2;47	144;78	y	0.16	13.5	69.0	2;25	99;39	y	0.12	16.0	121.0	5;27	182;60	y	0.05	3.5	62.5	0;7	87;38	n	0.15	13.5	76.5	0;27	125;28	n	0.16	21.0	111.5	4;38	164;59	y	0.14	15.0	93.5	2;28	132;55	y	0.16	16.5	86.5	1;32	123;50	n	ENSMUSG00000020107.11	Anapc16	chr10	protein_coding	anaphase promoting complex subunit 16
known_NIR_1649	chr10	59832436	59838778	-	59832436	59838240	5pMXE	ENSMUST00000182152.2	known	0.60	58	38	58	38	y	0.55	38	31	38	31	y	0.59	61	42	61	42	y	0.53	43	38	43	38	y	0.60	78	53	78	53	y	0.48	39	42	39	42	y	0.56	60	48	60	48	y	0.69	38	17	38	17	y	0.44	28	36	28	36	y	0.54	59	51	59	51	y	0.62	55	33	55	33	y	0.60	50	33	50	33	y	ENSMUSG00000020107.11	Anapc16	chr10	protein_coding	anaphase promoting complex subunit 16
known_NIR_1650	chr10	59832436;59838289	59838240;59838778	-	59832436	59838778	cassetteExon	ENSMUST00000182898.8	known	0.38	36.0	58	38;34	58	y	0.41	26.0	38	31;21	38	y	0.38	37.5	61	42;33	61	y	0.44	34.0	43	38;30	43	y	0.39	50.0	78	53;47	78	y	0.46	33.5	39	42;25	39	y	0.38	37.5	60	48;27	60	y	0.24	12.0	38	17;7	38	y	0.53	31.5	28	36;27	28	y	0.43	44.5	59	51;38	59	y	0.36	30.5	55	33;28	55	y	0.39	32.5	50	33;32	50	y	ENSMUSG00000020107.11	Anapc16	chr10	protein_coding	anaphase promoting complex subunit 16
known_NIR_1651	chr10	59839238	59840617	+	59838729	59840617	A5SS	ENSMUST00000219778.2	known	0.09	2	20	2	20	y	0.04	1	24	1	24	n	0.00	0	14	0	14	n	0.12	4	28	4	28	y	0.09	4	41	4	41	y	0.33	6	12	6	12	y	0.00	0	37	0	37	n	0.10	3	26	3	26	y	0.22	6	21	6	21	y	0.10	5	46	5	46	y	0.11	4	32	4	32	y	0.12	3	21	3	21	y	ENSMUSG00000044475.15	Ascc1	chr10	protein_coding	activating signal cointegrator 1 complex subunit 1
known_NIR_1652	chr10	59849596	59877943	+	59849596	59861545	3pMXE	ENSMUST00000219778.2	known	1.00	25	0	25	0	n	1.00	28	0	28	0	n	0.92	35	3	35	3	y	0.96	24	1	24	1	n	1.00	42	0	42	0	n	0.95	20	1	20	1	n	0.96	54	2	54	2	y	0.90	26	3	26	3	y	0.96	46	2	46	2	y	0.97	62	2	62	2	y	1.00	39	0	39	0	n	0.88	30	4	30	4	y	ENSMUSG00000044475.15	Ascc1	chr10	protein_coding	activating signal cointegrator 1 complex subunit 1
known_NIR_1653	chr10	60120353	60127421	+	60113604	60127421	A5SS	ENSMUST00000105465.8	known	0.00	0	300	0	300	n	0.01	2	221	2	221	y	0.00	0	377	0	377	n	0.00	0	424	0	424	n	0.00	0	523	0	523	n	0.00	0	283	0	283	n	0.00	0	509	0	509	n	0.00	0	285	0	285	n	0.00	0	331	0	331	n	0.00	0	531	0	531	n	0.01	2	307	2	307	y	0.01	2	396	2	396	y	ENSMUSG00000004207.15	Psap	chr10	protein_coding	prosaposin
known_NIR_1654	chr10	60131782;60133325	60133317;60134877	+	60131782	60134877	cassetteExon	ENSMUST00000105465.8	known	0.06	50.0	780	50;50	780	y	0.02	18.0	714	18;18	714	y	0.04	38.0	998	36;40	998	y	0.05	50.5	1014	52;49	1014	y	0.04	47.0	1241	46;48	1241	y	0.02	16.5	705	17;16	705	y	0.06	84.0	1235	86;82	1235	y	0.02	17.0	715	16;18	715	y	0.07	54.0	740	53;55	740	y	0.05	62.5	1131	64;61	1131	y	0.05	39.0	773	40;38	773	y	0.05	53.0	1049	52;54	1049	y	ENSMUSG00000004207.15	Psap	chr10	protein_coding	prosaposin
known_NIR_1655	chr10	60203572	60204311	+	60203572	60204308	A3SS	ENSMUST00000020301.14	known	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.29	2	5	2	5	n	0.10	2	19	2	19	y	0.17	4	20	4	20	y	0.29	2	5	2	5	n	0.18	4	18	4	18	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.43	3	4	3	4	n	0.00	0	4	0	4	n	0.35	6	11	6	11	y	ENSMUSG00000020101.15	Vsir	chr10	protein_coding	V-set immunoregulatory receptor
known_NIR_1656	chr10	60925195;60927974	60927843;60928383	+	60925195	60928383	cassetteExon	ENSMUST00000218005.2	known	1.00	1048.0	1	723;1373	1	n	1.00	917.5	2	609;1226	2	y	1.00	541.0	2	400;682	2	y	1.00	1075.0	2	772;1378	2	y	1.00	1109.5	4	723;1496	4	y	1.00	389.5	0	277;502	0	n	1.00	1046.5	2	702;1391	2	y	1.00	468.5	2	352;585	2	y	1.00	945.0	0	665;1225	0	n	1.00	1327.0	2	897;1757	2	y	1.00	1062.5	0	685;1440	0	n	1.00	1198.5	4	785;1612	4	y	ENSMUSG00000020098.8	Pcbd1	chr10	protein_coding	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1
known_NIR_1657	chr10	60949924	60953474	-	60949936	60953474	A3SS	ENSMUST00000122259.8	known	0.00	0	55	0	55	n	0.00	0	32	0	32	n	0.00	0	75	0	75	n	0.00	0	82	0	82	n	0.04	4	95	4	95	y	0.00	0	35	0	35	n	0.03	2	73	2	73	y	0.05	3	52	3	52	y	0.00	0	70	0	70	n	0.00	0	102	0	102	n	0.00	0	50	0	50	n	0.04	5	116	5	116	y	ENSMUSG00000020097.15	Sgpl1	chr10	protein_coding	sphingosine phosphate lyase 1
known_NIR_1658	chr10	60982110	60983364	-	60982110	60983302	A5SS	ENSMUST00000122259.8	known	0.21	4	15	4	15	y	0.56	5	4	5	4	n	0.20	4	16	4	16	y	0.39	15	23	15	23	y	0.18	7	31	7	31	y	0.33	5	10	5	10	y	0.17	2	10	2	10	y	0.12	3	21	3	21	y	0.24	5	16	5	16	y	0.46	6	7	6	7	y	0.25	4	12	4	12	y	0.10	3	28	3	28	y	ENSMUSG00000020097.15	Sgpl1	chr10	protein_coding	sphingosine phosphate lyase 1
known_NIR_1659	chr10	60982110	60983395	-	60982110	60983302	A5SS	ENSMUST00000122259.8	known	0.00	0	15	0	15	n	0.20	1	4	1	4	n	0.00	0	16	0	16	n	0.08	2	23	2	23	y	0.11	4	31	4	31	y	0.23	3	10	3	10	y	0.00	0	10	0	10	n	0.12	3	21	3	21	y	0.11	2	16	2	16	y	0.00	0	7	0	7	n	0.08	1	12	1	12	n	0.00	0	28	0	28	n	ENSMUSG00000020097.15	Sgpl1	chr10	protein_coding	sphingosine phosphate lyase 1
known_NIR_1660	chr10	60982110	60983395	-	60982110	60983364	A5SS	ENSMUST00000092498.12	known	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.12	2	15	2	15	y	0.36	4	7	4	7	y	0.38	3	5	3	5	n	0.00	0	2	0	2	n	0.50	3	3	3	3	n	0.29	2	5	2	5	n	0.00	0	6	0	6	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	ENSMUSG00000020097.15	Sgpl1	chr10	protein_coding	sphingosine phosphate lyase 1
known_NIR_1661	chr10	61516192	61520659	+	61516192;61519966	61519840;61520659	ES	ENSMUST00000220372.2	known	0.93	114	8.0	114	10;6	y	0.96	89	4.0	89	3;5	y	0.92	203	18.0	203	17;19	y	0.93	124	10.0	124	7;13	y	0.95	192	10.5	192	15;6	y	0.96	152	6.0	152	6;6	y	0.95	165	8.0	165	10;6	y	0.94	133	8.5	133	2;15	y	0.92	103	8.5	103	8;9	y	0.94	146	10.0	146	9;11	y	0.93	115	9.0	115	6;12	y	0.96	164	7.5	164	6;9	y	ENSMUSG00000020088.11	Sar1a	chr10	protein_coding	secretion associated Ras related GTPase 1A
known_NIR_1662	chr10	61516192;61517927	61517878;61520659	+	61516192	61520659	cassetteExon	ENSMUST00000020285.10	known	0.09	11.0	114	8;14	114	y	0.03	2.5	89	3;2	89	y	0.01	2.0	203	2;2	203	y	0.04	5.0	124	5;5	124	y	0.02	4.5	192	4;5	192	y	0.03	5.5	152	7;4	152	y	0.01	2.5	165	1;4	165	n	0.01	2.0	133	1;3	133	n	0.02	2.5	103	2;3	103	y	0.02	2.5	146	2;3	146	y	0.02	2.0	115	1;3	115	n	0.03	5.5	164	6;5	164	y	ENSMUSG00000020088.11	Sar1a	chr10	protein_coding	secretion associated Ras related GTPase 1A
known_NIR_1663	chr10	61516192;61517927	61517878;61520659	+	61516192;61519966	61519840;61520659	MXE	ENSMUST00000220372.2	known	0.58	11.0	8.0	8;14	10;6	y	0.38	2.5	4.0	3;2	3;5	y	0.10	2.0	18.0	2;2	17;19	y	0.33	5.0	10.0	5;5	7;13	y	0.30	4.5	10.5	4;5	15;6	y	0.48	5.5	6.0	7;4	6;6	y	0.24	2.5	8.0	1;4	10;6	n	0.19	2.0	8.5	1;3	2;15	n	0.23	2.5	8.5	2;3	8;9	y	0.20	2.5	10.0	2;3	9;11	y	0.18	2.0	9.0	1;3	6;12	n	0.42	5.5	7.5	6;5	6;9	y	ENSMUSG00000020088.11	Sar1a	chr10	protein_coding	secretion associated Ras related GTPase 1A
known_NIR_1664	chr10	61516192;61517927	61517878;61520659	+	61516192;61520110	61520013;61520659	MXE	ENSMUST00000219506.2	known	0.76	11.0	3.5	8;14	5;2	y	0.36	2.5	4.5	3;2	3;6	y	0.21	2.0	7.5	2;2	0;15	n	0.62	5.0	3.0	5;5	4;2	y	0.39	4.5	7.0	4;5	4;10	y	0.69	5.5	2.5	7;4	2;3	y	0.17	2.5	12.5	1;4	7;18	n	0.27	2.0	5.5	1;3	4;7	n	0.56	2.5	2.0	2;3	1;3	n	0.25	2.5	7.5	2;3	5;10	y	0.20	2.0	8.0	1;3	6;10	n	0.61	5.5	3.5	6;5	2;5	y	ENSMUSG00000020088.11	Sar1a	chr10	protein_coding	secretion associated Ras related GTPase 1A
known_NIR_1665	chr10	61516192;61520110	61519840;61520659	+	61516192	61520659	cassetteExon	ENSMUST00000020285.10	known	0.05	6.0	114	10;2	114	y	0.05	4.5	89	3;6	89	y	0.07	16.0	203	17;15	203	y	0.04	4.5	124	7;2	124	y	0.06	12.5	192	15;10	192	y	0.03	4.5	152	6;3	152	y	0.08	14.0	165	10;18	165	y	0.03	4.5	133	2;7	133	y	0.05	5.5	103	8;3	103	y	0.06	9.5	146	9;10	146	y	0.07	8.0	115	6;10	115	y	0.03	5.5	164	6;5	164	y	ENSMUSG00000020088.11	Sar1a	chr10	protein_coding	secretion associated Ras related GTPase 1A
known_NIR_1666	chr10	61516192;61520110	61519840;61520659	+	61516192;61517927	61517878;61520659	MXE	ENSMUST00000218474.2	known	0.35	6.0	11.0	10;2	8;14	y	0.64	4.5	2.5	3;6	3;2	y	0.89	16.0	2.0	17;15	2;2	y	0.47	4.5	5.0	7;2	5;5	y	0.74	12.5	4.5	15;10	4;5	y	0.45	4.5	5.5	6;3	7;4	y	0.85	14.0	2.5	10;18	1;4	n	0.69	4.5	2.0	2;7	1;3	n	0.69	5.5	2.5	8;3	2;3	y	0.79	9.5	2.5	9;10	2;3	y	0.80	8.0	2.0	6;10	1;3	n	0.50	5.5	5.5	6;5	6;5	y	ENSMUSG00000020088.11	Sar1a	chr10	protein_coding	secretion associated Ras related GTPase 1A
known_NIR_1667	chr10	61516192;61520110	61520013;61520659	+	61516192	61520659	cassetteExon	ENSMUST00000020285.10	known	0.03	3.5	114	5;2	114	y	0.05	4.5	89	3;6	89	y	0.04	7.5	203	0;15	203	n	0.02	3.0	124	4;2	124	y	0.04	7.0	192	4;10	192	y	0.02	2.5	152	2;3	152	y	0.07	12.5	165	7;18	165	y	0.04	5.5	133	4;7	133	y	0.02	2.0	103	1;3	103	n	0.05	7.5	146	5;10	146	y	0.07	8.0	115	6;10	115	y	0.02	3.5	164	2;5	164	y	ENSMUSG00000020088.11	Sar1a	chr10	protein_coding	secretion associated Ras related GTPase 1A
known_NIR_1668	chr10	61516192;61520110	61520013;61520659	+	61516192;61519966	61519840;61520659	MXE	ENSMUST00000220372.2	known	0.30	3.5	8.0	5;2	10;6	y	0.53	4.5	4.0	3;6	3;5	y	0.29	7.5	18.0	0;15	17;19	n	0.23	3.0	10.0	4;2	7;13	y	0.40	7.0	10.5	4;10	15;6	y	0.29	2.5	6.0	2;3	6;6	y	0.61	12.5	8.0	7;18	10;6	y	0.39	5.5	8.5	4;7	2;15	y	0.19	2.0	8.5	1;3	8;9	n	0.43	7.5	10.0	5;10	9;11	y	0.47	8.0	9.0	6;10	6;12	y	0.32	3.5	7.5	2;5	6;9	y	ENSMUSG00000020088.11	Sar1a	chr10	protein_coding	secretion associated Ras related GTPase 1A
known_NIR_1669	chr10	61516676	61520659	+	61516192	61520659	A5SS	ENSMUST00000020285.10	known	0.03	3	114	3	114	y	0.02	2	89	2	89	y	0.03	6	203	6	203	y	0.02	2	124	2	124	y	0.02	3	192	3	192	y	0.01	1	152	1	152	n	0.03	5	165	5	165	y	0.04	5	133	5	133	y	0.01	1	103	1	103	n	0.03	5	146	5	146	y	0.03	3	115	3	115	y	0.01	2	164	2	164	y	ENSMUSG00000020088.11	Sar1a	chr10	protein_coding	secretion associated Ras related GTPase 1A
known_NIR_1670	chr10	61516676	61520659	+	61517927	61520659	A5SS&ES	ENSMUST00000218474.2	known	0.18	3	14	3	14	y	0.50	2	2	2	2	n	0.75	6	2	6	2	n	0.29	2	5	2	5	n	0.38	3	5	3	5	n	0.20	1	4	1	4	n	0.56	5	4	5	4	n	0.62	5	3	5	3	n	0.25	1	3	1	3	n	0.62	5	3	5	3	n	0.50	3	3	3	3	n	0.29	2	5	2	5	n	ENSMUSG00000020088.11	Sar1a	chr10	protein_coding	secretion associated Ras related GTPase 1A
known_NIR_1671	chr10	61516676	61520659	+	61519966	61520659	A5SS&ES	ENSMUST00000220372.2	known	0.33	3	6	3	6	n	0.29	2	5	2	5	n	0.24	6	19	6	19	y	0.13	2	13	2	13	y	0.33	3	6	3	6	n	0.14	1	6	1	6	n	0.45	5	6	5	6	y	0.25	5	15	5	15	y	0.10	1	9	1	9	n	0.31	5	11	5	11	y	0.20	3	12	3	12	y	0.18	2	9	2	9	y	ENSMUSG00000020088.11	Sar1a	chr10	protein_coding	secretion associated Ras related GTPase 1A
known_NIR_1672	chr10	61516676	61520659	+	61520110	61520659	A5SS&ES	ENSMUST00000219506.2	known	0.60	3	2	3	2	n	0.25	2	6	2	6	n	0.29	6	15	6	15	y	0.50	2	2	2	2	n	0.23	3	10	3	10	y	0.25	1	3	1	3	n	0.22	5	18	5	18	y	0.42	5	7	5	7	y	0.25	1	3	1	3	n	0.33	5	10	5	10	y	0.23	3	10	3	10	y	0.29	2	5	2	5	n	ENSMUSG00000020088.11	Sar1a	chr10	protein_coding	secretion associated Ras related GTPase 1A
known_NIR_1673	chr10	61522257;61525466	61525391;61525553	+	61522257	61525553	cassetteExon	ENSMUST00000220372.2	known	0.00	0.0	230	0;0	230	n	0.00	0.0	248	0;0	248	n	0.00	2.0	431	2;2	431	y	0.00	0.0	294	0;0	294	n	0.00	0.0	344	0;0	344	n	0.00	0.5	278	1;0	278	n	0.01	2.0	326	0;4	326	n	0.00	0.0	256	0;0	256	n	0.00	0.0	235	0;0	235	n	0.00	0.5	282	0;1	282	n	0.00	0.0	266	0;0	266	n	0.00	0.0	296	0;0	296	n	ENSMUSG00000020088.11	Sar1a	chr10	protein_coding	secretion associated Ras related GTPase 1A
known_NIR_1674	chr10	61532521	61535222	+	61532521	61534077	A3SS&ES	ENSMUST00000218280.2	known	0.01	1	160	1	160	n	0.01	1	138	1	138	n	0.04	3	75	3	75	y	0.02	3	144	3	144	y	0.01	2	163	2	163	y	0.00	0	106	0	106	n	0.02	5	201	5	201	y	0.00	0	73	0	73	n	0.00	0	114	0	114	n	0.00	0	158	0	158	n	0.01	2	173	2	173	y	0.00	0	132	0	132	n	ENSMUSG00000020087.6	Tysnd1	chr10	protein_coding	trypsin domain containing 1
known_NIR_1675	chr10	61532521	61535222	+	61532521;61534207	61534077;61535222	ES	ENSMUST00000020284.5	known	0.01	1	162.5	1	160;165	n	0.01	1	147.0	1	138;156	n	0.04	3	79.0	3	75;83	y	0.02	3	168.5	3	144;193	y	0.01	2	185.5	2	163;208	y	0.00	0	89.0	0	106;72	n	0.03	5	193.0	5	201;185	y	0.00	0	79.0	0	73;85	n	0.00	0	113.5	0	114;113	n	0.00	0	177.5	0	158;197	n	0.01	2	191.0	2	173;209	y	0.00	0	129.0	0	132;126	n	ENSMUSG00000020087.6	Tysnd1	chr10	protein_coding	trypsin domain containing 1
known_NIR_1676	chr10	61534207	61535263	+	61534207	61535222	A3SS	ENSMUST00000020284.5	known	0.07	12	165	12	165	y	0.07	11	156	11	156	y	0.03	3	83	3	83	y	0.08	17	193	17	193	y	0.06	14	208	14	208	y	0.06	5	72	5	72	y	0.05	10	185	10	185	y	0.03	3	85	3	85	y	0.00	0	113	0	113	n	0.05	10	197	10	197	y	0.08	17	209	17	209	y	0.05	6	126	6	126	y	ENSMUSG00000020087.6	Tysnd1	chr10	protein_coding	trypsin domain containing 1
known_NIR_1677	chr10	61571437	61574178	+	61571437	61572362	A3SS&ES	ENSMUST00000067857.11	known	0.00	0	77	0	77	n	0.00	0	75	0	75	n	0.00	0	87	0	87	n	0.00	0	95	0	95	n	0.02	2	116	2	116	y	0.00	0	62	0	62	n	0.00	0	120	0	120	n	0.00	0	60	0	60	n	0.00	0	57	0	57	n	0.00	0	102	0	102	n	0.04	3	79	3	79	y	0.00	0	77	0	77	n	ENSMUSG00000020085.16	Aifm2	chr10	protein_coding	apoptosis-inducing factor, mitochondrion-associated 2
known_NIR_1678	chr10	61571437	61574178	+	61571437;61572537	61572362;61574178	ES	ENSMUST00000105455.9	known	0.00	0	48.5	0	77;20	n	0.00	0	48.0	0	75;21	n	0.00	0	49.5	0	87;12	n	0.00	0	61.5	0	95;28	n	0.02	2	79.5	2	116;43	y	0.00	0	42.5	0	62;23	n	0.00	0	80.0	0	120;40	n	0.00	0	40.0	0	60;20	n	0.00	0	33.5	0	57;10	n	0.00	0	70.0	0	102;38	n	0.05	3	53.5	3	79;28	y	0.00	0	50.0	0	77;23	n	ENSMUSG00000020085.16	Aifm2	chr10	protein_coding	apoptosis-inducing factor, mitochondrion-associated 2
known_NIR_1679	chr10	61572537	61574807	+	61572537	61574178	3pMXE	ENSMUST00000105455.9	known	0.44	16	20	16	20	y	0.36	12	21	12	21	y	0.43	9	12	9	12	y	0.28	11	28	11	28	y	0.31	19	43	19	43	y	0.26	8	23	8	23	y	0.38	24	40	24	40	y	0.39	13	20	13	20	y	0.38	6	10	6	10	y	0.28	15	38	15	38	y	0.26	10	28	10	28	y	0.32	11	23	11	23	y	ENSMUSG00000020085.16	Aifm2	chr10	protein_coding	apoptosis-inducing factor, mitochondrion-associated 2
known_NIR_1680	chr10	61686944	61692117	-	61686944;61689171	61689136;61692117	ES	ENSMUST00000145469.8	known	0.71	5	2.0	5	2;2	n	0.62	4	2.5	4	4;1	n	0.65	33	17.5	33	19;16	y	0.27	2	5.5	2	6;5	y	0.55	6	5.0	6	5;5	y	0.74	13	4.5	13	4;5	y	0.81	13	3.0	13	3;3	y	0.74	7	2.5	7	4;1	n	0.77	5	1.5	5	1;2	n	0.78	7	2.0	7	3;1	n	0.80	4	1.0	4	1;1	n	0.80	4	1.0	4	2;0	n	ENSMUSG00000058806.16	Col13a1	chr10	protein_coding	collagen, type XIII, alpha 1
known_NIR_1681	chr10	61696263	61698407	-	61696263;61697892	61697794;61698407	ES	ENSMUST00000105451.8	known	0.89	8	1.0	8	1;1	n	0.77	5	1.5	5	2;1	n	0.61	17	11.0	17	14;8	y	1.00	6	0.0	6	0;0	n	0.58	7	5.0	7	6;4	y	0.56	7	5.5	7	7;4	y	0.67	4	2.0	4	0;4	n	0.90	9	1.0	9	1;1	n	0.92	6	0.5	6	1;0	n	1.00	4	0.0	4	0;0	n	0.78	7	2.0	7	2;2	y	0.67	2	1.0	2	2;0	n	ENSMUSG00000058806.16	Col13a1	chr10	protein_coding	collagen, type XIII, alpha 1
known_NIR_1682	chr10	61723135	61725858	-	61723135	61728735	A5SS	ENSMUST00000051826.14	known	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.12	2	15	2	15	y	-	-	-	-	-	-	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000058806.16	Col13a1	chr10	protein_coding	collagen, type XIII, alpha 1
known_NIR_1683	chr10	61723135	61728735	-	61723135;61727043	61726987;61728735	ES	ENSMUST00000105453.8	known	0.73	4	1.5	4	1;2	n	0.20	1	4.0	1	6;2	n	0.54	15	13.0	15	14;12	y	0.00	0	2.0	0	3;1	n	0.65	11	6.0	11	5;7	y	0.41	6	8.5	6	8;9	y	0.50	5	5.0	5	7;3	y	0.67	6	3.0	6	4;2	y	0.11	1	8.5	1	8;9	n	0.60	3	2.0	3	4;0	n	0.00	0	1.5	0	2;1	n	0.00	0	1.0	0	1;1	n	ENSMUSG00000058806.16	Col13a1	chr10	protein_coding	collagen, type XIII, alpha 1
known_NIR_1684	chr10	61738919;61741059	61741033;61744461	-	61738919	61744461	cassetteExon	ENSMUST00000105453.8	known	1.00	2.5	0	2;3	0	n	0.67	2.0	1	2;2	1	n	0.69	13.5	6	12;15	6	y	0.43	1.5	2	1;2	2	n	1.00	6.0	0	5;7	0	n	0.50	4.0	4	3;5	4	y	0.57	4.0	3	4;4	3	y	0.56	2.5	2	2;3	2	n	0.33	0.5	1	1;0	1	n	0.43	1.5	2	1;2	2	n	1.00	4.5	0	5;4	0	n	1.00	0.5	0	1;0	0	n	ENSMUSG00000058806.16	Col13a1	chr10	protein_coding	collagen, type XIII, alpha 1
known_NIR_1685	chr10	62265587	62266250	-	62265613	62266250	A3SS	ENSMUST00000020273.16	known	0.08	6	70	6	70	y	0.02	1	64	1	64	n	0.00	0	35	0	35	n	0.06	3	47	3	47	y	0.00	0	61	0	61	n	0.09	3	31	3	31	y	0.10	8	76	8	76	y	0.00	0	13	0	13	n	0.00	0	46	0	46	n	0.00	0	73	0	73	n	0.11	7	59	7	59	y	0.00	0	45	0	45	n	ENSMUSG00000020079.16	Supv3l1	chr10	protein_coding	suppressor of var1, 3-like 1 (S. cerevisiae)
known_NIR_1686	chr10	62277025	62279158	-	62277025	62279174	A5SS	ENSMUST00000020273.16	known	0.03	1	32	1	32	n	0.06	2	31	2	31	y	0.04	1	26	1	26	n	0.00	0	34	0	34	n	0.10	3	28	3	28	y	0.00	0	17	0	17	n	0.10	3	26	3	26	y	0.12	3	23	3	23	y	0.05	1	21	1	21	n	0.07	3	41	3	41	y	0.00	0	24	0	24	n	0.10	5	45	5	45	y	ENSMUSG00000020079.16	Supv3l1	chr10	protein_coding	suppressor of var1, 3-like 1 (S. cerevisiae)
known_NIR_1687	chr10	62305836	62316337	-	62305836;62306914	62306839;62316337	ES	ENSMUST00000092473.5	known	0.06	3	50.5	3	43;58	y	0.05	2	36.5	2	30;43	y	0.01	1	70.0	1	58;82	n	0.05	4	70.5	4	52;89	y	0.06	5	75.5	5	72;79	y	0.03	1	34.0	1	36;32	n	0.05	3	63.0	3	59;67	y	0.03	1	35.0	1	33;37	n	0.00	0	42.0	0	44;40	n	0.07	6	75.5	6	65;86	y	0.04	2	43.0	2	37;49	y	0.00	0	80.0	0	77;83	n	ENSMUSG00000020078.17	Vps26a	chr10	protein_coding	VPS26 retromer complex component A
known_NIR_1688	chr10	62305836;62306914	62306839;62322437	-	62305836;62316486	62316337;62322437	MXE	ENSMUST00000219574.2	known	0.52	21.5	19.5	43;0	3;36	n	0.49	15.0	15.5	30;0	2;29	n	0.46	29.5	34.0	58;1	1;67	n	0.43	26.0	35.0	52;0	4;66	n	0.49	37.0	38.0	72;2	5;71	y	0.46	18.0	21.5	36;0	1;42	n	0.47	29.5	33.5	59;0	3;64	n	0.52	16.5	15.5	33;0	1;30	n	0.50	22.5	22.5	44;1	0;45	n	0.47	33.0	37.5	65;1	6;69	n	0.47	19.0	21.5	37;1	2;41	n	0.56	38.5	30.5	77;0	0;61	n	ENSMUSG00000020078.17	Vps26a	chr10	protein_coding	VPS26 retromer complex component A
known_NIR_1689	chr10	62306914	62322437	-	62306914;62316486	62316337;62322437	ES	ENSMUST00000105447.11	known	0.00	0	47.0	0	58;36	n	0.00	0	36.0	0	43;29	n	0.01	1	74.5	1	82;67	n	0.00	0	77.5	0	89;66	n	0.03	2	75.0	2	79;71	y	0.00	0	37.0	0	32;42	n	0.00	0	65.5	0	67;64	n	0.00	0	33.5	0	37;30	n	0.02	1	42.5	1	40;45	n	0.01	1	77.5	1	86;69	n	0.02	1	45.0	1	49;41	n	0.00	0	72.0	0	83;61	n	ENSMUSG00000020078.17	Vps26a	chr10	protein_coding	VPS26 retromer complex component A
known_NIR_1690	chr10	62452295;62455408	62455364;62457168	-	62452295	62457168	cassetteExon	ENSMUST00000218304.2	known	1.00	132.5	0	124;141	0	n	0.98	189.5	3	181;198	3	y	0.99	241.5	3	240;243	3	y	0.98	119.5	3	120;119	3	y	1.00	225.5	1	213;238	1	n	0.99	147.0	2	137;157	2	y	1.00	210.5	1	205;216	1	n	1.00	155.5	0	155;156	0	n	1.00	119.0	0	110;128	0	n	0.97	196.5	6	190;203	6	y	0.99	218.0	3	209;227	3	y	0.99	184.0	2	177;191	2	y	ENSMUSG00000020076.8	Ddx50	chr10	protein_coding	DExD box helicase 50
known_NIR_1691	chr10	62482980	62486804	-	62482980	62483313	5pMXE	ENSMUST00000220370.2	known	0.31	17	38	17	38	y	0.30	18	43	18	43	y	0.35	48	90	48	90	y	0.55	53	44	53	44	y	0.28	44	113	44	113	y	0.30	30	70	30	70	y	0.32	36	78	36	78	y	0.34	34	65	34	65	y	0.33	21	42	21	42	y	0.32	31	65	31	65	y	0.33	23	46	23	46	y	0.31	27	59	27	59	y	ENSMUSG00000020076.8	Ddx50	chr10	protein_coding	DExD box helicase 50
known_NIR_1692	chr10	62482980;62483422	62483313;62486804	-	62482980	62486804	cassetteExon	ENSMUST00000020270.6	known	0.71	41.0	17	38;44	17	y	0.68	38.5	18	43;34	18	y	0.62	80.0	48	90;70	48	y	0.43	39.5	53	44;35	53	y	0.70	103.0	44	113;93	44	y	0.64	54.5	30	70;39	30	y	0.65	66.5	36	78;55	36	y	0.64	59.5	34	65;54	34	y	0.65	39.5	21	42;37	21	y	0.69	68.0	31	65;71	31	y	0.65	42.5	23	46;39	23	y	0.71	65.0	27	59;71	27	y	ENSMUSG00000020076.8	Ddx50	chr10	protein_coding	DExD box helicase 50
known_NIR_1693	chr10	62626821	62627909	-	62626821	62627984	A5SS	ENSMUST00000020268.7	known	0.00	0	2	0	2	n	1.00	2	0	2	0	n	0.55	6	5	6	5	y	1.00	2	0	2	0	n	0.33	2	4	2	4	n	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.33	1	2	1	2	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000020074.8	Ccar1	chr10	protein_coding	cell division cycle and apoptosis regulator 1
known_NIR_1694	chr10	62626821	62627909	-	62626821	62627989	A5SS	ENSMUST00000218229.2	known	0.00	0	1	0	1	n	1.00	2	0	2	0	n	0.60	6	4	6	4	y	0.33	2	4	2	4	n	0.67	2	1	2	1	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.33	1	2	1	2	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000020074.8	Ccar1	chr10	protein_coding	cell division cycle and apoptosis regulator 1
known_NIR_1695	chr10	62626821	62627909	-	62626821	62627995	A5SS	ENSMUST00000219527.2	known	0.00	0	13	0	13	n	0.22	2	7	2	7	n	0.25	6	18	6	18	y	0.12	2	14	2	14	y	0.09	2	21	2	21	y	0.10	1	9	1	9	n	0.00	0	12	0	12	n	0.07	1	14	1	14	n	0.06	1	16	1	16	n	0.05	1	21	1	21	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	ENSMUSG00000020074.8	Ccar1	chr10	protein_coding	cell division cycle and apoptosis regulator 1
known_NIR_1696	chr10	62626821	62627989	-	62626821	62627995	A5SS	ENSMUST00000219527.2	known	0.07	1	13	1	13	n	0.00	0	7	0	7	n	0.18	4	18	4	18	y	0.22	4	14	4	14	y	0.05	1	21	1	21	n	0.00	0	9	0	9	n	0.14	2	12	2	12	y	0.12	2	14	2	14	y	0.11	2	16	2	16	y	0.05	1	21	1	21	n	0.23	3	10	3	10	y	0.06	1	15	1	15	n	ENSMUSG00000020074.8	Ccar1	chr10	protein_coding	cell division cycle and apoptosis regulator 1
known_NIR_1697	chr10	62626821	62627995	-	62626821	62627984	A5SS	ENSMUST00000020268.7	known	0.87	13	2	13	2	y	1.00	7	0	7	0	n	0.78	18	5	18	5	y	1.00	14	0	14	0	n	0.84	21	4	21	4	y	0.75	9	3	9	3	y	0.71	12	5	12	5	y	0.78	14	4	14	4	y	0.89	16	2	16	2	y	0.84	21	4	21	4	y	0.83	10	2	10	2	y	0.88	15	2	15	2	y	ENSMUSG00000020074.8	Ccar1	chr10	protein_coding	cell division cycle and apoptosis regulator 1
known_NIR_1698	chr10	62768570	62773197	+	62768561	62773197	A5SS	ENSMUST00000044977.10	known	0.01	1	85	1	85	n	0.00	0	61	0	61	n	0.00	0	120	0	120	n	0.01	1	145	1	145	n	0.02	3	136	3	136	y	0.03	2	58	2	58	y	0.00	0	113	0	113	n	0.00	0	79	0	79	n	0.01	1	95	1	95	n	0.00	0	179	0	179	n	0.00	0	111	0	111	n	0.00	0	133	0	133	n	ENSMUSG00000071253.9	Slc25a16	chr10	protein_coding	solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16
known_NIR_1699	chr10	62803521	62805559	+	62803521	62805555	A3SS	ENSMUST00000131422.8	known	0.11	3	24	3	24	y	0.14	2	12	2	12	y	0.23	5	17	5	17	y	0.12	3	21	3	21	y	0.08	3	35	3	35	y	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.00	0	16	0	16	n	0.14	3	18	3	18	y	0.17	5	24	5	24	y	0.04	1	22	1	22	n	0.11	3	25	3	25	y	ENSMUSG00000036875.16	Dna2	chr10	protein_coding	DNA replication helicase/nuclease 2
known_NIR_1700	chr10	62853389	62853865	-	62853389	62853820	A5SS	ENSMUST00000020263.14	known	0.43	15	20	15	20	y	0.33	12	24	12	24	y	0.42	13	18	13	18	y	0.48	23	25	23	25	y	0.38	13	21	13	21	y	0.55	6	5	6	5	y	0.44	24	31	24	31	y	0.37	7	12	7	12	y	0.51	20	19	20	19	y	0.42	22	30	22	30	y	0.49	17	18	17	18	y	0.43	18	24	18	24	y	ENSMUSG00000020069.17	Hnrnph3	chr10	protein_coding	heterogeneous nuclear ribonucleoprotein H3
known_NIR_1701	chr10	62854004	62855172	-	62854004;62854677	62854539;62855172	ES	ENSMUST00000020263.14	known	0.62	33	20.5	33	23;18	y	0.53	19	17.0	19	17;17	y	0.41	15	22.0	15	25;19	y	0.52	16	15.0	16	16;14	y	0.57	30	23.0	30	28;18	y	0.48	8	8.5	8	5;12	y	0.50	31	30.5	31	26;35	y	0.54	14	12.0	14	14;10	y	0.69	19	8.5	19	12;5	y	0.52	27	24.5	27	29;20	y	0.57	26	20.0	26	18;22	y	0.66	39	20.0	39	21;19	y	ENSMUSG00000020069.17	Hnrnph3	chr10	protein_coding	heterogeneous nuclear ribonucleoprotein H3
known_NIR_1702	chr10	62896694	62897337	+	62896694;62897245	62897076;62897337	ES	ENSMUST00000219687.2	known	0.72	9	3.5	9	2;5	y	0.57	4	3.0	4	0;6	n	0.48	5	5.5	5	4;7	y	0.40	4	6.0	4	2;10	y	0.61	15	9.5	15	3;16	y	0.36	2	3.5	2	1;6	n	0.62	14	8.5	14	6;11	y	0.35	3	5.5	3	4;7	y	0.50	4	4.0	4	3;5	y	0.58	11	8.0	11	4;12	y	0.31	2	4.5	2	0;9	n	0.57	8	6.0	8	4;8	y	ENSMUSG00000112129.2	Pbld1	chr10	protein_coding	phenazine biosynthesis-like protein domain containing 1
known_NIR_1703	chr10	62897480	62901563	+	62897480	62899637	3pMXE	ENSMUST00000219687.2	known	0.98	330	6	330	6	y	0.99	197	2	197	2	y	0.98	150	3	150	3	y	0.99	381	2	381	2	y	0.99	478	5	478	5	y	0.98	147	3	147	3	y	0.99	365	5	365	5	y	0.98	252	5	252	5	y	0.97	236	8	236	8	y	0.99	474	4	474	4	y	1.00	336	0	336	0	n	0.99	362	3	362	3	y	ENSMUSG00000112129.2	Pbld1	chr10	protein_coding	phenazine biosynthesis-like protein domain containing 1
known_NIR_1704	chr10	63081904;63085865	63085733;63099805	+	63081904	63099805	cassetteExon	ENSMUST00000219230.2	known	0.00	0.0	16	0;0	16	n	0.03	0.5	16	0;1	16	n	0.03	1.5	52	3;0	52	n	0.03	1.5	44	1;2	44	n	0.03	2.0	65	1;3	65	n	0.11	2.0	16	2;2	16	y	0.00	0.0	34	0;0	34	n	0.02	0.5	26	0;1	26	n	0.05	2.0	42	2;2	42	y	0.01	0.5	47	0;1	47	n	0.03	1.0	30	2;0	30	n	0.02	1.0	60	1;1	60	n	ENSMUSG00000020064.10	Herc4	chr10	protein_coding	hect domain and RLD 4
known_NIR_1705	chr10	63114244	63118992	+	63114244	63118960	A3SS	ENSMUST00000020258.10	known	0.00	0	39	0	39	n	0.00	0	17	0	17	n	0.00	0	61	0	61	n	0.07	4	51	4	51	y	0.02	1	60	1	60	n	0.00	0	31	0	31	n	0.00	0	53	0	53	n	0.00	0	43	0	43	n	0.00	0	39	0	39	n	0.00	0	64	0	64	n	0.00	0	36	0	36	n	0.00	0	78	0	78	n	ENSMUSG00000020064.10	Herc4	chr10	protein_coding	hect domain and RLD 4
known_NIR_1706	chr10	63126455;63127062	63126959;63134899	+	63126455	63134899	cassetteExon	ENSMUST00000020258.10	known	0.01	0.5	45	1;0	45	n	0.07	2.5	32	3;2	32	y	0.08	5.5	67	5;6	67	y	0.02	1.0	65	1;1	65	n	0.04	4.0	95	1;7	95	n	0.06	2.0	31	2;2	31	y	0.02	1.5	65	2;1	65	n	0.05	2.5	44	4;1	44	n	0.07	4.0	52	3;5	52	y	0.05	3.5	67	4;3	67	y	0.02	1.0	58	2;0	58	n	0.01	0.5	88	1;0	88	n	ENSMUSG00000020064.10	Herc4	chr10	protein_coding	hect domain and RLD 4
known_NIR_1707	chr10	63135018	63142127	+	63139647	63142127	5pMXE	ENSMUST00000219279.2	known	0.88	46	6	46	6	y	0.95	35	2	35	2	y	0.92	56	5	56	5	y	0.83	54	11	54	11	y	0.88	76	10	76	10	y	0.94	29	2	29	2	y	0.88	71	10	71	10	y	0.93	41	3	41	3	y	0.90	52	6	52	6	y	0.80	74	18	74	18	y	0.90	47	5	47	5	y	0.90	71	8	71	8	y	ENSMUSG00000020064.10	Herc4	chr10	protein_coding	hect domain and RLD 4
known_NIR_1708	chr10	63135018;63139647	63139624;63142127	+	63135018	63142127	cassetteExon	ENSMUST00000020258.10	known	0.09	4.5	46	3;6	46	y	0.05	2.0	35	2;2	35	y	0.10	6.0	56	7;5	56	y	0.14	9.0	54	7;11	54	y	0.12	10.5	76	11;10	76	y	0.05	1.5	29	1;2	29	n	0.14	12.0	71	14;10	71	y	0.08	3.5	41	4;3	41	y	0.10	5.5	52	5;6	52	y	0.18	16.5	74	15;18	74	y	0.11	6.0	47	7;5	47	y	0.08	6.0	71	4;8	71	y	ENSMUSG00000020064.10	Herc4	chr10	protein_coding	hect domain and RLD 4
known_NIR_1709	chr10	63150348	63152479	+	63150348;63151622	63151439;63152479	ES	ENSMUST00000020258.10	known	0.01	1	93.0	1	78;108	n	0.06	7	109.5	7	91;128	y	0.00	0	111.0	0	116;106	n	0.00	0	98.0	0	84;112	n	0.02	2	128.0	2	120;136	y	0.04	2	50.0	2	51;49	y	0.05	7	134.0	7	131;137	y	0.01	1	67.0	1	63;71	n	0.02	2	103.0	2	87;119	y	0.05	7	137.5	7	116;159	y	0.00	0	107.5	0	96;119	n	0.02	3	141.5	3	147;136	y	ENSMUSG00000020064.10	Herc4	chr10	protein_coding	hect domain and RLD 4
known_NIR_1710	chr10	63161965;63162563	63162439;63167524	-	63161965	63167524	cassetteExon	ENSMUST00000120239.8	known	0.06	1.0	15	1;1	15	n	0.00	0.0	5	0;0	5	n	0.15	3.5	20	5;2	20	y	0.06	1.0	16	2;0	16	n	0.14	4.0	25	3;5	25	y	0.00	0.0	3	0;0	3	n	0.07	1.5	21	0;3	21	n	0.00	0.0	15	0;0	15	n	0.18	3.0	14	4;2	14	y	0.29	2.0	5	2;2	5	n	0.04	0.5	11	1;0	11	n	0.20	4.0	16	5;3	16	y	ENSMUSG00000020063.17	Sirt1	chr10	protein_coding	sirtuin 1
known_NIR_1711	chr10	63171656	63174344	-	63171656	63172759	5pMXE	ENSMUST00000146028.8	known	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.12	1	7	1	7	n	0.10	2	19	2	19	y	0.00	0	5	0	5	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	ENSMUSG00000020063.17	Sirt1	chr10	protein_coding	sirtuin 1
known_NIR_1712	chr10	63171656	63174344	-	63171656;63172875	63172759;63174344	ES	ENSMUST00000120239.8	known	0.00	0	6.0	0	5;7	n	0.00	0	5.0	0	7;3	n	0.00	0	10.0	0	12;8	n	0.14	1	6.0	1	7;5	n	0.11	2	17.0	2	19;15	y	0.00	0	4.5	0	5;4	n	0.00	0	12.0	0	15;9	n	0.00	0	4.0	0	6;2	n	0.00	0	6.5	0	9;4	n	0.00	0	10.5	0	12;9	n	0.00	0	3.5	0	6;1	n	0.00	0	10.5	0	13;8	n	ENSMUSG00000020063.17	Sirt1	chr10	protein_coding	sirtuin 1
known_NIR_1713	chr10	63222554	63231564	+	63218297	63231564	A5SS	ENSMUST00000129625.8	known	1.00	345	1	345	1	n	1.00	395	0	395	0	n	0.99	341	3	341	3	y	0.99	373	5	373	5	y	1.00	589	2	589	2	y	1.00	165	0	165	0	n	1.00	389	0	389	0	n	1.00	277	0	277	0	n	0.98	189	3	189	3	y	1.00	301	1	301	1	n	0.99	93	1	93	1	n	1.00	452	1	452	1	n	ENSMUSG00000036764.13	Dnajc12	chr10	protein_coding	DnaJ heat shock protein family (Hsp40) member C12
known_NIR_1714	chr10	66849565;66849943	66849867;66850681	-	66849565	66850681	cassetteExon	ENSMUST00000020023.9	known	0.00	0.0	69	0;0	69	n	0.02	1.5	66	1;2	66	n	0.02	3.5	140	1;6	140	n	0.03	3.0	85	2;4	85	y	0.03	4.0	126	4;4	126	y	0.03	2.0	77	2;2	77	y	0.01	1.5	121	0;3	121	n	0.01	1.0	106	1;1	106	n	0.03	1.5	56	2;1	56	n	0.04	4.0	101	3;5	101	y	0.02	1.5	77	2;1	77	n	0.01	1.5	104	1;2	104	n	ENSMUSG00000019873.9	Reep3	chr10	protein_coding	receptor accessory protein 3
known_NIR_1715	chr10	66963201	66993686	+	66932497	66993686	A5SS	ENSMUST00000174062.8	known	0.17	1	5	1	5	n	0.00	0	1	0	1	n	0.80	8	2	8	2	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.33	1	2	1	2	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000037876.18	Jmjd1c	chr10	protein_coding	jumonji domain containing 1C
known_NIR_1716	chr10	67022090	67025515	+	66993850	67025515	A5SS	ENSMUST00000174062.8	known	0.50	2	2	2	2	n	0.00	0	5	0	5	n	0.12	3	23	3	23	y	0.33	4	8	4	8	y	0.58	7	5	7	5	y	0.00	0	5	0	5	n	0.43	3	4	3	4	n	0.50	3	3	3	3	n	0.00	0	2	0	2	n	0.75	6	2	6	2	n	0.33	2	4	2	4	n	0.50	5	5	5	5	y	ENSMUSG00000037876.18	Jmjd1c	chr10	protein_coding	jumonji domain containing 1C
known_NIR_1717	chr10	67085585	67088151	+	67085585	67090231	A3SS	ENSMUST00000174408.8	known	0.02	2	83	2	83	y	0.00	0	68	0	68	n	0.01	2	164	2	164	y	0.00	0	78	0	78	n	0.00	0	83	0	83	n	0.00	0	55	0	55	n	0.03	2	72	2	72	y	0.00	0	48	0	48	n	0.00	0	54	0	54	n	0.00	0	98	0	98	n	0.00	0	64	0	64	n	0.01	1	90	1	90	n	ENSMUSG00000037876.18	Jmjd1c	chr10	protein_coding	jumonji domain containing 1C
known_NIR_1718	chr10	67970936	67972316	-	67970936	68021856	A5SS	ENSMUST00000219238.2	known	0.63	19	11	19	11	y	0.60	12	8	12	8	y	0.73	19	7	19	7	y	0.60	25	17	25	17	y	0.83	34	7	34	7	y	0.76	13	4	13	4	y	0.82	27	6	27	6	y	0.85	17	3	17	3	y	0.42	14	19	14	19	y	0.63	27	16	27	16	y	0.69	9	4	9	4	y	0.89	59	7	59	7	y	ENSMUSG00000019947.11	Arid5b	chr10	protein_coding	AT rich interactive domain 5B (MRF1-like)
known_NIR_1719	chr10	69048564	69051132	+	68991361	69051132	A5SS	ENSMUST00000167286.8	known	0.11	2	17	2	17	y	0.25	1	3	1	3	n	0.05	1	21	1	21	n	0.27	4	11	4	11	y	0.00	0	19	0	19	n	0.00	0	15	0	15	n	0.24	5	16	5	16	y	0.27	4	11	4	11	y	0.14	1	6	1	6	n	0.28	5	13	5	13	y	0.20	2	8	2	8	y	0.18	2	9	2	9	y	ENSMUSG00000019944.15	Rhobtb1	chr10	protein_coding	Rho-related BTB domain containing 1
known_NIR_1720	chr10	69049205	69051132	+	68991361	69051132	A5SS	ENSMUST00000167286.8	known	0.48	16	17	16	17	y	0.84	16	3	16	3	y	0.25	7	21	7	21	y	0.74	32	11	32	11	y	0.44	15	19	15	19	y	0.35	8	15	8	15	y	0.27	6	16	6	16	y	0.35	6	11	6	11	y	0.62	10	6	10	6	y	0.69	29	13	29	13	y	0.73	22	8	22	8	y	0.55	11	9	11	9	y	ENSMUSG00000019944.15	Rhobtb1	chr10	protein_coding	Rho-related BTB domain containing 1
known_NIR_1721	chr10	69049205	69051132	+	69048564	69051132	A5SS	ENSMUST00000020101.12	known	0.89	16	2	16	2	y	0.94	16	1	16	1	n	0.88	7	1	7	1	n	0.89	32	4	32	4	y	1.00	15	0	15	0	n	1.00	8	0	8	0	n	0.55	6	5	6	5	y	0.60	6	4	6	4	y	0.91	10	1	10	1	n	0.85	29	5	29	5	y	0.92	22	2	22	2	y	0.85	11	2	11	2	y	ENSMUSG00000019944.15	Rhobtb1	chr10	protein_coding	Rho-related BTB domain containing 1
known_NIR_1722	chr10	69051182	69084601	+	69055369	69084601	5pMXE	ENSMUST00000172261.3	known	0.91	40	4	40	4	y	0.86	37	6	37	6	y	0.95	53	3	53	3	y	0.93	67	5	67	5	y	0.89	42	5	42	5	y	0.86	32	5	32	5	y	0.88	46	6	46	6	y	0.88	29	4	29	4	y	0.96	27	1	27	1	n	0.90	65	7	65	7	y	0.95	41	2	41	2	y	0.88	42	6	42	6	y	ENSMUSG00000019944.15	Rhobtb1	chr10	protein_coding	Rho-related BTB domain containing 1
known_NIR_1723	chr10	69051182;69055369	69055277;69084601	+	69051182	69084601	cassetteExon	ENSMUST00000167286.8	known	0.05	2.0	40	0;4	40	n	0.09	3.5	37	1;6	37	n	0.04	2.0	53	1;3	53	n	0.04	2.5	67	0;5	67	n	0.11	5.0	42	5;5	42	y	0.09	3.0	32	1;5	32	n	0.06	3.0	46	0;6	46	n	0.06	2.0	29	0;4	29	n	0.02	0.5	27	0;1	27	n	0.05	3.5	65	0;7	65	n	0.04	1.5	41	1;2	41	n	0.07	3.0	42	0;6	42	n	ENSMUSG00000019944.15	Rhobtb1	chr10	protein_coding	Rho-related BTB domain containing 1
known_NIR_1724	chr10	69085558	69105733	+	69085558	69102017	3pMXE	ENSMUST00000163497.8	known	0.06	2	31	2	31	y	0.05	1	21	1	21	n	0.00	0	49	0	49	n	0.00	0	54	0	54	n	0.00	0	31	0	31	n	0.00	0	31	0	31	n	0.00	0	45	0	45	n	0.00	0	25	0	25	n	0.00	0	22	0	22	n	0.00	0	65	0	65	n	0.00	0	32	0	32	n	0.00	0	42	0	42	n	ENSMUSG00000019944.15	Rhobtb1	chr10	protein_coding	Rho-related BTB domain containing 1
known_NIR_1725	chr10	69085558	69105733	+	69085558;69102202	69102017;69105733	ES	ENSMUST00000164034.8	known	0.05	2	39.5	2	31;48	y	0.03	1	29.5	1	21;38	n	0.00	0	54.0	0	49;59	n	0.00	0	55.0	0	54;56	n	0.00	0	41.0	0	31;51	n	0.00	0	38.0	0	31;45	n	0.00	0	57.0	0	45;69	n	0.00	0	38.0	0	25;51	n	0.00	0	25.0	0	22;28	n	0.00	0	61.5	0	65;58	n	0.00	0	35.5	0	32;39	n	0.00	0	40.5	0	42;39	n	ENSMUSG00000019944.15	Rhobtb1	chr10	protein_coding	Rho-related BTB domain containing 1
known_NIR_1726	chr10	69762021	69763525	+	69740100	69763525	A5SS	ENSMUST00000182155.8	known	1.00	9	0	9	0	n	1.00	6	0	6	0	n	1.00	1	0	1	0	n	0.82	14	3	14	3	y	0.95	20	1	20	1	n	1.00	7	0	7	0	n	1.00	15	0	15	0	n	0.91	10	1	10	1	n	1.00	12	0	12	0	n	1.00	29	0	29	0	n	1.00	11	0	11	0	n	1.00	17	0	17	0	n	ENSMUSG00000069601.15	Ank3	chr10	protein_coding	ankyrin 3, epithelial
known_NIR_1727	chr10	69763648	69765277	+	69763648	69768224	A3SS	ENSMUST00000218680.2	known	0.07	1	14	1	14	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	20	0	20	n	0.00	0	26	0	26	n	0.00	0	4	0	4	n	0.25	7	21	7	21	y	0.20	2	8	2	8	y	0.00	0	7	0	7	n	0.00	0	26	0	26	n	0.00	0	12	0	12	n	0.00	0	18	0	18	n	ENSMUSG00000069601.15	Ank3	chr10	protein_coding	ankyrin 3, epithelial
known_NIR_1728	chr10	69763648	69768239	+	69763648	69768224	A3SS	ENSMUST00000218680.2	known	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	20	0	20	n	0.00	0	26	0	26	n	0.20	1	4	1	4	n	0.00	0	21	0	21	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.04	1	26	1	26	n	0.00	0	12	0	12	n	0.10	2	18	2	18	y	ENSMUSG00000069601.15	Ank3	chr10	protein_coding	ankyrin 3, epithelial
known_NIR_1729	chr10	69817991	69830202	+	69818027	69830202	A5SS	ENSMUST00000218680.2	known	0.00	0	17	0	17	n	0.00	0	17	0	17	n	0.00	0	3	0	3	n	0.16	4	21	4	21	y	0.03	1	28	1	28	n	0.00	0	7	0	7	n	0.38	13	21	13	21	y	0.00	0	15	0	15	n	0.00	0	22	0	22	n	0.08	3	33	3	33	y	0.00	0	27	0	27	n	0.00	0	28	0	28	n	ENSMUSG00000069601.15	Ank3	chr10	protein_coding	ankyrin 3, epithelial
known_NIR_1730	chr10	69835328	69838341	+	69835328	69837753	A3SS	ENSMUST00000182884.8	known	0.61	17	11	17	11	y	0.88	22	3	22	3	y	0.14	1	6	1	6	n	0.60	12	8	12	8	y	0.74	17	6	17	6	y	0.50	5	5	5	5	y	0.57	23	17	23	17	y	0.43	10	13	10	13	y	0.62	15	9	15	9	y	0.77	43	13	43	13	y	0.65	13	7	13	7	y	0.62	24	15	24	15	y	ENSMUSG00000069601.15	Ank3	chr10	protein_coding	ankyrin 3, epithelial
known_NIR_1731	chr10	69840821	69842630	+	69840821	69851398	A3SS	ENSMUST00000218680.2	known	0.00	0	31	0	31	n	0.00	0	28	0	28	n	0.00	0	2	0	2	n	0.00	0	14	0	14	n	0.00	0	24	0	24	n	0.00	0	3	0	3	n	0.15	4	22	4	22	y	0.00	0	12	0	12	n	0.00	0	23	0	23	n	0.00	0	33	0	33	n	0.00	0	19	0	19	n	0.00	0	34	0	34	n	ENSMUSG00000069601.15	Ank3	chr10	protein_coding	ankyrin 3, epithelial
known_NIR_1732	chr10	69840821	69842633	+	69840821	69842630	A3SS	ENSMUST00000183169.8	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.69	9	4	9	4	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000069601.15	Ank3	chr10	protein_coding	ankyrin 3, epithelial
known_NIR_1733	chr10	69840821	69842633	+	69840821	69851398	A3SS	ENSMUST00000218680.2	known	0.00	0	31	0	31	n	0.00	0	28	0	28	n	0.00	0	2	0	2	n	0.00	0	14	0	14	n	0.00	0	24	0	24	n	0.00	0	3	0	3	n	0.29	9	22	9	22	y	0.00	0	12	0	12	n	0.00	0	23	0	23	n	0.00	0	33	0	33	n	0.00	0	19	0	19	n	0.00	0	34	0	34	n	ENSMUSG00000069601.15	Ank3	chr10	protein_coding	ankyrin 3, epithelial
known_NIR_1734	chr10	69840821	69851401	+	69840821	69842633	A3SS&ES	ENSMUST00000182269.8	known	1.00	5	0	5	0	n	1.00	2	0	2	0	n	1.00	4	0	4	0	n	1.00	7	0	7	0	n	1.00	12	0	12	0	n	1.00	2	0	2	0	n	0.31	4	9	4	9	y	-	-	-	-	-	-	1.00	8	0	8	0	n	1.00	3	0	3	0	n	1.00	4	0	4	0	n	1.00	11	0	11	0	n	ENSMUSG00000069601.15	Ank3	chr10	protein_coding	ankyrin 3, epithelial
known_NIR_1735	chr10	69840821	69851401	+	69840821	69851398	A3SS	ENSMUST00000218680.2	known	0.14	5	31	5	31	y	0.07	2	28	2	28	y	0.67	4	2	4	2	n	0.33	7	14	7	14	y	0.33	12	24	12	24	y	0.40	2	3	2	3	n	0.15	4	22	4	22	y	0.00	0	12	0	12	n	0.26	8	23	8	23	y	0.08	3	33	3	33	y	0.17	4	19	4	19	y	0.24	11	34	11	34	y	ENSMUSG00000069601.15	Ank3	chr10	protein_coding	ankyrin 3, epithelial
known_NIR_1736	chr10	69850076	69851398	+	69840821	69851398	A5SS	ENSMUST00000218680.2	known	0.00	0	31	0	31	n	0.00	0	28	0	28	n	0.00	0	2	0	2	n	0.00	0	14	0	14	n	0.00	0	24	0	24	n	0.00	0	3	0	3	n	0.27	8	22	8	22	y	0.00	0	12	0	12	n	0.00	0	23	0	23	n	0.00	0	33	0	33	n	0.00	0	19	0	19	n	0.00	0	34	0	34	n	ENSMUSG00000069601.15	Ank3	chr10	protein_coding	ankyrin 3, epithelial
known_NIR_1737	chr10	70023645	70023757	+	70023645	70024908	A3SS	ENSMUST00000147545.8	known	0.12	2	14	2	14	y	0.17	2	10	2	10	y	0.22	7	25	7	25	y	0.00	0	24	0	24	n	0.09	4	41	4	41	y	0.24	4	13	4	13	y	0.09	2	20	2	20	y	0.10	2	19	2	19	y	0.14	2	12	2	12	y	0.17	5	25	5	25	y	0.33	5	10	5	10	y	0.21	4	15	4	15	y	ENSMUSG00000048701.14	Ccdc6	chr10	protein_coding	coiled-coil domain containing 6
known_NIR_1738	chr10	70761208;70763624	70763545;70766421	-	70761208	70766421	cassetteExon	ENSMUST00000143791.8	known	0.00	0.0	2	0;0	2	n	0.50	1.0	1	1;1	1	n	0.42	5.0	7	4;6	7	y	0.14	0.5	3	1;0	3	n	0.75	3.0	1	1;5	1	n	0.25	1.0	3	0;2	3	n	0.41	3.5	5	2;5	5	y	0.00	0.0	1	0;0	1	n	1.00	2.0	0	0;4	0	n	1.00	1.5	0	2;1	0	n	1.00	3.5	0	3;4	0	n	0.20	1.0	4	1;1	4	n	ENSMUSG00000014329.15	Bicc1	chr10	protein_coding	BicC family RNA binding protein 1
known_NIR_1739	chr10	71013815	71017833	-	71013815;71014717	71014640;71017833	ES	ENSMUST00000218381.2	known	0.55	21	17.5	21	33;2	y	0.55	31	25.0	31	49;1	n	0.73	50	18.5	50	36;1	n	0.75	39	13.0	39	25;1	n	0.60	46	30.5	46	61;0	n	0.72	28	11.0	28	22;0	n	0.63	46	26.5	46	53;0	n	0.66	30	15.5	30	31;0	n	0.64	39	22.0	39	42;2	y	0.73	69	25.5	69	50;1	n	0.65	37	20.0	37	40;0	n	0.66	54	27.5	54	54;1	n	ENSMUSG00000112366.2	C730027H18Rik	chr10	lncRNA	RIKEN cDNA C730027H18 gene
known_NIR_1740	chr10	71201935	71208535	+	71201935	71208538	A3SS	ENSMUST00000079252.13	known	0.21	11	41	11	41	y	0.17	6	30	6	30	y	0.25	16	49	16	49	y	0.25	24	71	24	71	y	0.17	13	64	13	64	y	0.27	8	22	8	22	y	0.39	36	56	36	56	y	0.24	10	32	10	32	y	0.23	10	34	10	34	y	0.29	31	76	31	76	y	0.25	15	46	15	46	y	0.32	36	78	36	78	y	ENSMUSG00000060733.14	Ipmk	chr10	protein_coding	inositol polyphosphate multikinase
known_NIR_1741	chr10	72493220	72503731	+	72493220	72509798	A3SS	ENSMUST00000020081.11	known	0.03	5	138	5	138	y	0.00	0	129	0	129	n	0.06	8	137	8	137	y	0.02	3	155	3	155	y	0.02	5	212	5	212	y	0.00	0	84	0	84	n	0.01	3	230	3	230	y	0.02	1	65	1	65	n	0.02	3	127	3	127	y	0.05	12	216	12	216	y	0.01	2	157	2	157	y	0.01	2	194	2	194	y	ENSMUSG00000019923.15	Zwint	chr10	protein_coding	ZW10 interactor
known_NIR_1742	chr10	72493220	72504644	+	72493220	72503731	A3SS	ENSMUST00000105431.8	known	0.79	19	5	19	5	y	1.00	18	0	18	0	n	0.73	22	8	22	8	y	0.81	13	3	13	3	y	0.83	25	5	25	5	y	1.00	4	0	4	0	n	0.92	36	3	36	3	y	0.80	4	1	4	1	n	0.84	16	3	16	3	y	0.68	25	12	25	12	y	0.94	30	2	30	2	y	0.96	43	2	43	2	y	ENSMUSG00000019923.15	Zwint	chr10	protein_coding	ZW10 interactor
known_NIR_1743	chr10	72493220	72504644	+	72493220	72509798	A3SS	ENSMUST00000020081.11	known	0.12	19	138	19	138	y	0.12	18	129	18	129	y	0.14	22	137	22	137	y	0.08	13	155	13	155	y	0.11	25	212	25	212	y	0.05	4	84	4	84	y	0.14	36	230	36	230	y	0.06	4	65	4	65	y	0.11	16	127	16	127	y	0.10	25	216	25	216	y	0.16	30	157	30	157	y	0.18	43	194	43	194	y	ENSMUSG00000019923.15	Zwint	chr10	protein_coding	ZW10 interactor
known_NIR_1744	chr10	7474612	7479938	+	7474612;7478718	7478593;7479938	ES	ENSMUST00000134346.8	known	0.00	0	8.0	0	8;8	n	0.00	0	2.5	0	2;3	n	0.17	1	5.0	1	5;5	n	0.00	0	8.5	0	3;14	n	0.27	2	5.5	2	2;9	y	0.00	0	8.5	0	6;11	n	0.00	0	9.5	0	11;8	n	0.00	0	3.5	0	1;6	n	0.00	0	1.0	0	0;2	n	0.00	0	6.0	0	5;7	n	0.00	0	5.0	0	6;4	n	0.00	0	6.0	0	7;5	n	ENSMUSG00000019796.13	Lrp11	chr10	protein_coding	low density lipoprotein receptor-related protein 11
known_NIR_1745	chr10	75004070	75007167	+	75004070	75011109	A3SS	ENSMUST00000164107.3	known	0.00	0	45	0	45	n	0.00	0	59	0	59	n	0.00	0	56	0	56	n	0.00	0	37	0	37	n	0.02	2	81	2	81	y	0.00	0	28	0	28	n	0.00	0	61	0	61	n	0.00	0	27	0	27	n	0.00	0	39	0	39	n	0.02	1	53	1	53	n	0.00	0	44	0	44	n	0.02	1	63	1	63	n	ENSMUSG00000009681.11	Bcr	chr10	protein_coding	BCR activator of RhoGEF and GTPase
known_NIR_1746	chr10	75009999	75011109	+	75004070	75011109	A5SS	ENSMUST00000164107.3	known	0.00	0	45	0	45	n	0.00	0	59	0	59	n	0.07	4	56	4	56	y	0.00	0	37	0	37	n	0.00	0	81	0	81	n	0.00	0	28	0	28	n	0.02	1	61	1	61	n	0.00	0	27	0	27	n	0.00	0	39	0	39	n	0.00	0	53	0	53	n	0.04	2	44	2	44	y	0.00	0	63	0	63	n	ENSMUSG00000009681.11	Bcr	chr10	protein_coding	BCR activator of RhoGEF and GTPase
known_NIR_1747	chr10	75048323	75066516	+	75048051	75066516	A5SS	ENSMUST00000218766.2	known	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.12	2	14	2	14	y	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	ENSMUSG00000033444.15	Specc1l	chr10	protein_coding	sperm antigen with calponin homology and coiled-coil domains 1-like
known_NIR_1748	chr10	7506740	7513773	-	7506740	7513820	A5SS	ENSMUST00000161123.8	known	0.56	58	46	58	46	y	0.57	63	47	63	47	y	0.59	65	45	65	45	y	0.59	61	42	61	42	y	0.62	73	45	73	45	y	0.64	25	14	25	14	y	0.71	90	36	90	36	y	0.56	27	21	27	21	y	0.52	56	52	56	52	y	0.56	88	68	88	68	y	0.47	52	58	52	58	y	0.65	95	52	95	52	y	ENSMUSG00000019795.18	Pcmt1	chr10	protein_coding	protein-L-isoaspartate (D-aspartate) O-methyltransferase 1
known_NIR_1749	chr10	7523385	7524815	-	7523385;7524424	7524231;7524815	ES	ENSMUST00000161123.8	known	0.95	68	3.5	68	5;2	y	0.91	72	7.0	72	6;8	y	0.90	100	11.0	100	17;5	y	0.90	79	8.5	79	12;5	y	0.88	110	15.0	110	18;12	y	0.85	53	9.5	53	17;2	y	0.94	118	7.5	118	10;5	y	0.90	57	6.0	57	7;5	y	0.90	73	8.5	73	12;5	y	0.92	131	11.5	131	15;8	y	0.88	74	10.5	74	13;8	y	0.92	129	11.5	129	12;11	y	ENSMUSG00000019795.18	Pcmt1	chr10	protein_coding	protein-L-isoaspartate (D-aspartate) O-methyltransferase 1
known_NIR_1750	chr10	75246055	75248601	+	75242993	75248601	A5SS	ENSMUST00000039925.8	known	0.01	6	1070	6	1070	y	0.01	5	864	5	864	y	0.00	1	432	1	432	n	0.00	0	1180	0	1180	n	0.00	6	1487	6	1487	y	0.00	0	374	0	374	n	0.00	2	1355	2	1355	y	0.00	0	602	0	602	n	0.00	2	1037	2	1037	y	0.00	4	1703	4	1703	y	0.00	3	1113	3	1113	y	0.00	2	1420	2	1420	y	ENSMUSG00000033427.15	Upb1	chr10	protein_coding	ureidopropionase, beta
known_NIR_1751	chr10	7524919	7556671	-	7524919	7538839	5pMXE	ENSMUST00000161123.8	known	0.00	0	61	0	61	n	0.00	0	50	0	50	n	0.03	3	96	3	96	y	0.00	0	65	0	65	n	0.03	3	85	3	85	y	0.00	0	37	0	37	n	0.00	0	88	0	88	n	0.00	0	44	0	44	n	0.02	1	48	1	48	n	0.06	7	101	7	101	y	0.00	0	72	0	72	n	0.00	0	109	0	109	n	ENSMUSG00000019795.18	Pcmt1	chr10	protein_coding	protein-L-isoaspartate (D-aspartate) O-methyltransferase 1
known_NIR_1752	chr10	75345538	75345866	-	75345667	75345866	A3SS	ENSMUST00000145890.8	known	0.00	0	162	0	162	n	0.00	0	155	0	155	n	0.01	1	146	1	146	n	0.02	3	177	3	177	y	0.02	8	335	8	335	y	0.00	0	164	0	164	n	0.02	4	213	4	213	y	0.02	3	169	3	169	y	0.03	4	125	4	125	y	0.02	4	210	4	210	y	0.02	3	145	3	145	y	0.02	4	179	4	179	y	ENSMUSG00000033416.16	Gucd1	chr10	protein_coding	guanylyl cyclase domain containing 1
known_NIR_1753	chr10	75347120	75347737	-	75347120	75347906	A5SS	ENSMUST00000145890.8	known	0.00	0	134	0	134	n	0.00	0	111	0	111	n	0.01	1	120	1	120	n	0.00	0	147	0	147	n	0.01	3	306	3	306	y	0.01	1	137	1	137	n	0.00	1	239	1	239	n	0.01	1	128	1	128	n	0.00	0	137	0	137	n	0.00	0	177	0	177	n	0.01	1	153	1	153	n	0.01	1	143	1	143	n	ENSMUSG00000033416.16	Gucd1	chr10	protein_coding	guanylyl cyclase domain containing 1
known_NIR_1754	chr10	75347120	75347755	-	75347120	75347737	A5SS	ENSMUST00000123505.2	known	1.00	5	0	5	0	n	1.00	2	0	2	0	n	0.86	6	1	6	1	n	1.00	4	0	4	0	n	0.73	8	3	8	3	y	0.67	2	1	2	1	n	0.80	4	1	4	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	6	0	6	0	n	0.75	3	1	3	1	n	0.86	6	1	6	1	n	ENSMUSG00000033416.16	Gucd1	chr10	protein_coding	guanylyl cyclase domain containing 1
known_NIR_1755	chr10	75347120	75347755	-	75347120	75347906	A5SS	ENSMUST00000145890.8	known	0.04	5	134	5	134	y	0.02	2	111	2	111	y	0.05	6	120	6	120	y	0.03	4	147	4	147	y	0.03	8	306	8	306	y	0.01	2	137	2	137	y	0.02	4	239	4	239	y	0.00	0	128	0	128	n	0.01	1	137	1	137	n	0.03	6	177	6	177	y	0.02	3	153	3	153	y	0.04	6	143	6	143	y	ENSMUSG00000033416.16	Gucd1	chr10	protein_coding	guanylyl cyclase domain containing 1
known_NIR_1756	chr10	75347990	75353575	-	75347990	75352988	5pMXE	ENSMUST00000145890.8	known	0.00	0	145	0	145	n	0.00	0	127	0	127	n	0.03	5	154	5	154	y	0.02	4	178	4	178	y	0.01	2	308	2	308	y	0.00	0	146	0	146	n	0.02	5	209	5	209	y	0.00	0	155	0	155	n	0.01	1	132	1	132	n	0.00	1	215	1	215	n	0.01	1	141	1	141	n	0.03	5	160	5	160	y	ENSMUSG00000033416.16	Gucd1	chr10	protein_coding	guanylyl cyclase domain containing 1
known_NIR_1757	chr10	75347990	75353575	-	75347990	75353694	A5SS	ENSMUST00000118936.8	known	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.50	5	5	5	5	y	0.50	4	4	4	4	n	0.20	2	8	2	8	y	0.00	0	1	0	1	n	0.62	5	3	5	3	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.17	1	5	1	5	n	1.00	1	0	1	0	n	0.56	5	4	5	4	n	ENSMUSG00000033416.16	Gucd1	chr10	protein_coding	guanylyl cyclase domain containing 1
known_NIR_1758	chr10	75347990	75353694	-	75347990	75352988	5pMXE	ENSMUST00000145890.8	known	0.01	2	145	2	145	y	0.06	8	127	8	127	y	0.03	5	154	5	154	y	0.02	4	178	4	178	y	0.03	8	308	8	308	y	0.01	1	146	1	146	n	0.01	3	209	3	209	y	0.01	2	155	2	155	y	0.01	1	132	1	132	n	0.02	5	215	5	215	y	0.00	0	141	0	141	n	0.02	4	160	4	160	y	ENSMUSG00000033416.16	Gucd1	chr10	protein_coding	guanylyl cyclase domain containing 1
known_NIR_1759	chr10	75368064	75371095	+	75368203	75371095	A5SS	ENSMUST00000020397.11	known	0.00	1	239	1	239	n	0.00	0	263	0	263	n	0.00	1	206	1	206	n	0.01	2	183	2	183	y	0.00	1	252	1	252	n	0.00	0	107	0	107	n	0.00	1	270	1	270	n	0.00	0	107	0	107	n	0.00	0	172	0	172	n	0.00	1	272	1	272	n	0.01	2	250	2	250	y	0.01	3	227	3	227	y	ENSMUSG00000020180.11	Snrpd3	chr10	protein_coding	small nuclear ribonucleoprotein D3
known_NIR_1760	chr10	75494631	75503376	-	75494631	75520126	A5SS	ENSMUST00000001712.8	known	0.21	3	11	3	11	y	0.00	0	13	0	13	n	0.00	0	23	0	23	n	0.00	0	12	0	12	n	0.00	0	22	0	22	n	0.00	0	11	0	11	n	0.04	1	25	1	25	n	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.00	0	20	0	20	n	0.00	0	17	0	17	n	0.00	0	14	0	14	n	ENSMUSG00000020196.11	Cabin1	chr10	protein_coding	calcineurin binding protein 1
known_NIR_1761	chr10	75494631	75503849	-	75494631	75520126	A5SS	ENSMUST00000001712.8	known	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.00	0	23	0	23	n	0.00	0	12	0	12	n	0.12	3	22	3	22	y	0.00	0	11	0	11	n	0.04	1	25	1	25	n	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.00	0	20	0	20	n	0.00	0	17	0	17	n	0.00	0	14	0	14	n	ENSMUSG00000020196.11	Cabin1	chr10	protein_coding	calcineurin binding protein 1
known_NIR_1762	chr10	75535929	75549374	-	75535929	75549287	A5SS	ENSMUST00000001712.8	known	0.00	0	18	0	18	n	0.50	5	5	5	5	y	0.00	0	22	0	22	n	0.24	6	19	6	19	y	0.05	1	20	1	20	n	0.17	1	5	1	5	n	0.12	3	21	3	21	y	0.00	0	7	0	7	n	0.09	1	10	1	10	n	0.18	3	14	3	14	y	0.14	1	6	1	6	n	0.22	4	14	4	14	y	ENSMUSG00000020196.11	Cabin1	chr10	protein_coding	calcineurin binding protein 1
known_NIR_1763	chr10	75561219	75561383	-	75561238	75561383	A3SS	ENSMUST00000001712.8	known	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	19	0	19	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	15	0	15	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.15	3	17	3	17	y	0.00	0	14	0	14	n	0.00	0	12	0	12	n	ENSMUSG00000020196.11	Cabin1	chr10	protein_coding	calcineurin binding protein 1
known_NIR_1764	chr10	75561515	75562692	-	75561589	75562692	A3SS	ENSMUST00000001712.8	known	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.33	4	8	4	8	y	0.00	0	20	0	20	n	0.24	4	13	4	13	y	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	19	0	19	n	0.11	1	8	1	8	n	0.05	1	19	1	19	n	0.00	0	9	0	9	n	0.11	1	8	1	8	n	ENSMUSG00000020196.11	Cabin1	chr10	protein_coding	calcineurin binding protein 1
known_NIR_1765	chr10	75610844;75611331	75611324;75611705	-	75610844	75611705	cassetteExon	ENSMUST00000001715.10	known	0.00	0.0	101	0;0	101	n	0.02	1.0	59	1;1	59	n	0.00	0.0	20	0;0	20	n	0.03	4.0	120	4;4	120	y	0.00	0.0	62	0;0	62	n	0.00	0.0	15	0;0	15	n	0.02	2.0	94	1;3	94	n	0.07	1.5	19	2;1	19	n	0.03	3.0	92	2;4	92	y	0.03	4.5	140	5;4	140	y	0.01	2.0	183	2;2	183	y	0.02	3.5	158	3;4	158	y	ENSMUSG00000001665.12	Gstt3	chr10	protein_coding	glutathione S-transferase, theta 3
known_NIR_1766	chr10	75632964	75633514	-	75632964	75634219	A5SS	ENSMUST00000001713.10	known	0.02	7	459	7	459	y	0.04	16	368	16	368	y	0.05	6	108	6	108	y	0.04	18	483	18	483	y	0.01	4	313	4	313	y	0.00	0	84	0	84	n	0.05	20	411	20	411	y	0.07	7	93	7	93	y	0.04	24	519	24	519	y	0.03	21	637	21	637	y	0.03	25	798	25	798	y	0.03	16	587	16	587	y	ENSMUSG00000001663.11	Gstt1	chr10	protein_coding	glutathione S-transferase, theta 1
known_NIR_1767	chr10	75668402	75670009	-	75668402	75668495	5pMXE	ENSMUST00000218034.2	known	0.00	0	149	0	149	n	0.00	0	230	0	230	n	0.03	3	89	3	89	y	0.00	1	220	1	220	n	0.01	2	249	2	249	y	0.00	0	128	0	128	n	0.01	2	374	2	374	y	0.00	0	93	0	93	n	0.00	0	238	0	238	n	0.00	2	408	2	408	y	0.00	2	456	2	456	y	0.00	0	266	0	266	n	ENSMUSG00000033318.8	Gstt2	chr10	protein_coding	glutathione S-transferase, theta 2
known_NIR_1768	chr10	75668402	75670009	-	75669573	75670009	A3SS&ES	ENSMUST00000218500.2	known	0.00	0	183	0	183	n	0.00	0	211	0	211	n	0.03	3	91	3	91	y	0.00	1	253	1	253	n	0.01	2	307	2	307	y	0.00	0	111	0	111	n	0.01	2	357	2	357	y	0.00	0	136	0	136	n	0.00	0	240	0	240	n	0.01	2	383	2	383	y	0.00	2	406	2	406	y	0.00	0	278	0	278	n	ENSMUSG00000033318.8	Gstt2	chr10	protein_coding	glutathione S-transferase, theta 2
known_NIR_1769	chr10	75668428	75668495	-	75668402	75668495	A3SS	ENSMUST00000220440.2	known	0.00	0	149	0	149	n	0.00	0	230	0	230	n	0.00	0	89	0	89	n	0.00	0	220	0	220	n	0.01	2	249	2	249	y	0.00	0	128	0	128	n	0.00	0	374	0	374	n	0.00	0	93	0	93	n	0.00	1	238	1	238	n	0.00	1	408	1	408	n	0.00	0	456	0	456	n	0.00	0	266	0	266	n	ENSMUSG00000033318.8	Gstt2	chr10	protein_coding	glutathione S-transferase, theta 2
known_NIR_1770	chr10	75668666	75669486	-	75668645	75669486	A3SS	ENSMUST00000220440.2	known	0.07	10	140	10	140	y	0.02	3	191	3	191	y	0.02	2	80	2	80	y	0.02	4	205	4	205	y	0.02	5	245	5	245	y	0.02	2	104	2	104	y	0.04	12	283	12	283	y	0.02	3	118	3	118	y	0.05	9	173	9	173	y	0.03	11	320	11	320	y	0.03	10	371	10	371	y	0.04	8	213	8	213	y	ENSMUSG00000033318.8	Gstt2	chr10	protein_coding	glutathione S-transferase, theta 2
known_NIR_1771	chr10	75729351	75729456	+	75729351	75729453	A3SS	ENSMUST00000009236.6	known	0.03	1	34	1	34	n	0.10	4	35	4	35	y	0.10	18	158	18	158	y	0.05	1	19	1	19	n	0.04	6	129	6	129	y	0.09	10	107	10	107	y	0.09	10	102	10	102	y	0.10	16	139	16	139	y	0.07	7	91	7	91	y	0.05	4	80	4	80	y	0.19	15	62	15	62	y	0.13	3	20	3	20	y	ENSMUSG00000009092.6	Derl3	chr10	protein_coding	Der1-like domain family, member 3
known_NIR_1772	chr10	75729518	75729604	+	75729518	75730873	A3SS	ENSMUST00000218506.2	known	0.91	31	3	31	3	y	0.88	38	5	38	5	y	0.94	146	10	146	10	y	0.93	14	1	14	1	n	0.98	101	2	101	2	y	0.87	113	17	113	17	y	0.93	97	7	97	7	y	0.92	121	11	121	11	y	0.96	79	3	79	3	y	0.97	87	3	87	3	y	0.93	93	7	93	7	y	1.00	29	0	29	0	n	ENSMUSG00000009092.6	Derl3	chr10	protein_coding	Der1-like domain family, member 3
known_NIR_1773	chr10	75730461	75730873	+	75729518	75730873	A5SS	ENSMUST00000218506.2	known	0.93	40	3	40	3	y	0.89	42	5	42	5	y	0.94	159	10	159	10	y	0.96	26	1	26	1	n	0.98	128	2	128	2	y	0.83	82	17	82	17	y	0.95	135	7	135	7	y	0.91	117	11	117	11	y	0.96	78	3	78	3	y	0.97	85	3	85	3	y	0.94	101	7	101	7	y	1.00	44	0	44	0	n	ENSMUSG00000009092.6	Derl3	chr10	protein_coding	Der1-like domain family, member 3
known_NIR_1774	chr10	75747660	75750898	-	75747490	75750898	A3SS	ENSMUST00000000925.10	known	0.00	0	52	0	52	n	0.00	0	43	0	43	n	0.17	9	43	9	43	y	0.08	3	34	3	34	y	0.07	5	70	5	70	y	0.14	6	37	6	37	y	0.00	0	47	0	47	n	0.00	0	30	0	30	n	0.00	0	42	0	42	n	0.06	3	47	3	47	y	0.00	0	40	0	40	n	0.00	0	69	0	69	n	ENSMUSG00000000902.14	Smarcb1	chr10	protein_coding	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1
known_NIR_1775	chr10	75751027	75752634	-	75751027	75752607	A5SS	ENSMUST00000000925.10	known	0.86	55	9	55	9	y	0.71	30	12	30	12	y	0.75	44	15	44	15	y	0.83	40	8	40	8	y	0.82	56	12	56	12	y	0.88	30	4	30	4	y	0.80	43	11	43	11	y	0.67	24	12	24	12	y	0.73	32	12	32	12	y	0.89	42	5	42	5	y	0.84	46	9	46	9	y	0.84	56	11	56	11	y	ENSMUSG00000000902.14	Smarcb1	chr10	protein_coding	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1
known_NIR_1776	chr10	7617329	7624540	+	7617329;7619500	7619320;7624540	ES	ENSMUST00000019929.13	known	0.00	0	38.5	0	41;36	n	0.00	0	28.5	0	19;38	n	0.11	4	31.5	4	28;35	y	0.04	2	45.0	2	40;50	y	0.00	0	50.5	0	37;64	n	0.00	0	23.0	0	25;21	n	0.00	0	49.5	0	46;53	n	0.00	0	24.5	0	27;22	n	0.00	0	44.0	0	33;55	n	0.02	1	44.0	1	37;51	n	0.00	0	38.5	0	25;52	n	0.00	0	44.0	0	37;51	n	ENSMUSG00000019794.14	Katna1	chr10	protein_coding	katanin p60 (ATPase-containing) subunit A1
known_NIR_1777	chr10	76215889	76215997	-	76215889	76216051	A5SS	ENSMUST00000220395.2	known	0.10	2	18	2	18	y	0.22	2	7	2	7	n	0.00	0	8	0	8	n	0.10	1	9	1	9	n	0.00	0	16	0	16	n	0.00	0	5	0	5	n	0.08	1	12	1	12	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.09	1	10	1	10	n	0.33	4	8	4	8	y	0.25	4	12	4	12	y	ENSMUSG00000001151.11	Pcnt	chr10	protein_coding	pericentrin (kendrin)
known_NIR_1778	chr10	76248483	76254194	-	76248483	76252524	5pMXE	ENSMUST00000220395.2	known	1.00	2	0	2	0	n	1.00	2	0	2	0	n	1.00	9	0	9	0	n	1.00	5	0	5	0	n	1.00	7	0	7	0	n	1.00	1	0	1	0	n	0.64	7	4	7	4	y	1.00	2	0	2	0	n	1.00	3	0	3	0	n	1.00	3	0	3	0	n	1.00	11	0	11	0	n	1.00	4	0	4	0	n	ENSMUSG00000001151.11	Pcnt	chr10	protein_coding	pericentrin (kendrin)
known_NIR_1779	chr10	76317345	76318458	+	76316974	76318458	A5SS	ENSMUST00000170795.3	known	0.00	0	18	0	18	n	0.00	0	7	0	7	n	0.00	0	17	0	17	n	0.00	0	13	0	13	n	0.05	1	19	1	19	n	0.09	1	10	1	10	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.14	2	12	2	12	y	0.18	3	14	3	14	y	0.00	0	8	0	8	n	0.08	1	11	1	11	n	ENSMUSG00000001150.8	Mcm3ap	chr10	protein_coding	minichromosome maintenance complex component 3 associated protein
known_NIR_1780	chr10	7637125	7638554	+	7637133	7638554	A5SS	ENSMUST00000019929.13	known	0.00	0	60	0	60	n	0.00	0	81	0	81	n	0.00	0	56	0	56	n	0.00	0	39	0	39	n	0.05	5	88	5	88	y	0.05	2	41	2	41	y	0.00	0	82	0	82	n	0.00	0	41	0	41	n	0.00	0	59	0	59	n	0.00	0	74	0	74	n	0.00	0	46	0	46	n	0.00	0	62	0	62	n	ENSMUSG00000019794.14	Katna1	chr10	protein_coding	katanin p60 (ATPase-containing) subunit A1
known_NIR_1781	chr10	76413964	76415824	+	76413964;76415705	76415617;76415824	ES	ENSMUST00000001183.8	known	0.06	35	547.5	35	506;589	y	0.08	41	452.0	41	438;466	y	0.07	47	647.0	47	617;677	y	0.05	40	771.0	40	784;758	y	0.05	40	776.0	40	750;802	y	0.02	11	443.0	11	420;466	y	0.04	26	711.5	26	678;745	y	0.06	28	419.0	28	414;424	y	0.07	40	534.0	40	541;527	y	0.06	51	811.0	51	826;796	y	0.05	38	714.5	38	673;756	y	0.04	35	939.5	35	961;918	y	ENSMUSG00000001155.14	Ftcd	chr10	protein_coding	formiminotransferase cyclodeaminase
known_NIR_1782	chr10	76435727	76439163	-	76432645	76439163	A3SS	ENSMUST00000001181.13	known	0.20	1	4	1	4	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.18	2	9	2	9	y	0.00	0	1	0	1	n	0.18	2	9	2	9	y	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	ENSMUSG00000020241.14	Col6a2	chr10	protein_coding	collagen, type VI, alpha 2
known_NIR_1783	chr10	7649195	7649712	-	7649192	7649712	A3SS	ENSMUST00000039763.14	known	0.80	110	28	110	28	y	0.89	120	15	120	15	y	0.92	302	25	302	25	y	0.91	136	14	136	14	y	0.90	198	21	198	21	y	0.89	180	22	180	22	y	0.89	186	24	186	24	y	0.94	117	8	117	8	y	0.88	87	12	87	12	y	0.92	143	13	143	13	y	0.88	94	13	94	13	y	0.88	114	15	114	15	y	ENSMUSG00000040006.14	Ginm1	chr10	protein_coding	glycoprotein integral membrane 1
known_NIR_1784	chr10	7655126	7668272	-	7655126	7656525	5pMXE	ENSMUST00000039763.14	known	0.00	0	108	0	108	n	0.00	0	101	0	101	n	0.01	3	242	3	242	y	0.00	0	116	0	116	n	0.02	3	132	3	132	y	0.05	7	123	7	123	y	0.01	2	137	2	137	y	0.00	0	121	0	121	n	0.00	0	81	0	81	n	0.00	0	109	0	109	n	0.00	0	90	0	90	n	0.00	0	95	0	95	n	ENSMUSG00000040006.14	Ginm1	chr10	protein_coding	glycoprotein integral membrane 1
known_NIR_1785	chr10	76869181	76874184	+	76868614	76874184	A5SS	ENSMUST00000144234.8	known	0.50	2	2	2	2	n	0.62	5	3	5	3	n	0.88	7	1	7	1	n	0.91	10	1	10	1	n	0.85	17	3	17	3	y	1.00	2	0	2	0	n	0.25	3	9	3	9	y	0.36	4	7	4	7	y	1.00	2	0	2	0	n	0.44	4	5	4	5	n	1.00	3	0	3	0	n	0.45	5	6	5	6	y	ENSMUSG00000001436.16	Slc19a1	chr10	protein_coding	solute carrier family 19 (folate transporter), member 1
known_NIR_1786	chr10	76869284	76874184	+	76869181	76874184	A5SS	ENSMUST00000105410.10	known	0.00	0	2	0	2	n	0.29	2	5	2	5	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.11	2	17	2	17	y	0.71	5	2	5	2	n	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000001436.16	Slc19a1	chr10	protein_coding	solute carrier family 19 (folate transporter), member 1
known_NIR_1787	chr10	76891661	76894533	-	76891661;76893235	76893203;76894533	ES	ENSMUST00000081654.13	known	0.02	22	934.0	22	994;874	y	0.02	22	1033.5	22	1101;966	y	0.04	27	600.0	27	608;592	y	0.02	26	1029.0	26	1031;1027	y	0.02	28	1375.5	28	1402;1349	y	0.03	14	501.5	14	526;477	y	0.02	26	1244.5	26	1303;1186	y	0.04	27	715.0	27	753;677	y	0.01	9	916.5	9	958;875	y	0.02	26	1282.0	26	1327;1237	y	0.02	20	1143.5	20	1194;1093	y	0.01	10	1236.5	10	1294;1179	y	ENSMUSG00000001435.16	Col18a1	chr10	protein_coding	collagen, type XVIII, alpha 1
known_NIR_1788	chr10	76924790	76925034	-	76924790	76931825	A5SS	ENSMUST00000081654.13	known	0.00	0	807	0	807	n	0.00	1	592	1	592	n	0.02	9	532	9	532	y	0.00	1	984	1	984	n	0.00	0	1398	0	1398	n	0.00	2	524	2	524	y	0.00	1	1093	1	1093	n	0.00	2	804	2	804	y	0.00	0	781	0	781	n	0.00	2	1165	2	1165	y	0.00	0	806	0	806	n	0.00	4	1197	4	1197	y	ENSMUSG00000001435.16	Col18a1	chr10	protein_coding	collagen, type XVIII, alpha 1
known_NIR_1789	chr10	76932369	76948052	-	76932369	76948793	A5SS	ENSMUST00000105409.8	known	0.02	8	459	8	459	y	0.03	8	306	8	306	y	0.05	18	323	18	323	y	0.02	11	648	11	648	y	0.03	23	872	23	872	y	0.07	23	284	23	284	y	0.02	13	639	13	639	y	0.03	17	509	17	509	y	0.01	5	419	5	419	y	0.02	12	739	12	739	y	0.03	15	488	15	488	y	0.01	10	737	10	737	y	ENSMUSG00000001435.16	Col18a1	chr10	protein_coding	collagen, type XVIII, alpha 1
known_NIR_1790	chr10	76932369	76948052	-	76932369	77002124	A5SS	ENSMUST00000081654.13	known	1.00	8	0	8	0	n	1.00	8	0	8	0	n	1.00	18	0	18	0	n	1.00	11	0	11	0	n	0.92	23	2	23	2	y	1.00	23	0	23	0	n	1.00	13	0	13	0	n	1.00	17	0	17	0	n	1.00	5	0	5	0	n	1.00	12	0	12	0	n	1.00	15	0	15	0	n	1.00	10	0	10	0	n	ENSMUSG00000001435.16	Col18a1	chr10	protein_coding	collagen, type XVIII, alpha 1
known_NIR_1791	chr10	76932369	76948793	-	76932369	77002124	A5SS	ENSMUST00000081654.13	known	1.00	459	0	459	0	n	1.00	306	0	306	0	n	1.00	323	0	323	0	n	1.00	648	0	648	0	n	1.00	872	2	872	2	y	1.00	284	0	284	0	n	1.00	639	0	639	0	n	1.00	509	0	509	0	n	1.00	419	0	419	0	n	1.00	739	0	739	0	n	1.00	488	0	488	0	n	1.00	737	0	737	0	n	ENSMUSG00000001435.16	Col18a1	chr10	protein_coding	collagen, type XVIII, alpha 1
known_NIR_1792	chr10	77101866	77102747	+	77101795	77102747	A5SS	ENSMUST00000020493.9	known	0.00	0	33	0	33	n	0.00	0	27	0	27	n	0.09	4	41	4	41	y	0.00	0	26	0	26	n	0.00	0	42	0	42	n	0.00	0	28	0	28	n	0.00	0	33	0	33	n	0.00	0	14	0	14	n	0.00	0	18	0	18	n	0.00	0	34	0	34	n	0.00	0	16	0	16	n	0.00	0	32	0	32	n	ENSMUSG00000020260.10	Pofut2	chr10	protein_coding	protein O-fucosyltransferase 2
known_NIR_1793	chr10	77158417	77161700	-	77161525	77161700	3pMXE	ENSMUST00000150227.8	known	1.00	2	0	2	0	n	0.33	3	6	3	6	n	0.44	4	5	4	5	n	0.17	1	5	1	5	n	0.53	9	8	9	8	y	0.60	3	2	3	2	n	0.56	5	4	5	4	n	1.00	3	0	3	0	n	0.29	2	5	2	5	n	0.75	6	2	6	2	n	0.33	2	4	2	4	n	0.80	4	1	4	1	n	ENSMUSG00000020262.16	Adarb1	chr10	protein_coding	adenosine deaminase, RNA-specific, B1
known_NIR_1794	chr10	77158417;77161525	77161453;77161700	-	77158417	77161700	cassetteExon	ENSMUST00000020496.14	known	0.00	0.0	2	0;0	2	n	0.57	4.0	3	2;6	3	y	0.38	2.5	4	0;5	4	n	0.71	2.5	1	0;5	1	n	0.33	4.5	9	1;8	9	n	0.25	1.0	3	0;2	3	n	0.29	2.0	5	0;4	5	n	0.00	0.0	3	0;0	3	n	0.56	2.5	2	0;5	2	n	0.25	2.0	6	2;2	6	y	0.50	2.0	2	0;4	2	n	0.11	0.5	4	0;1	4	n	ENSMUSG00000020262.16	Adarb1	chr10	protein_coding	adenosine deaminase, RNA-specific, B1
known_NIR_1795	chr10	77350248	77351326	-	77350248	77351437	A5SS	ENSMUST00000045454.9	known	0.13	9	61	9	61	y	0.17	10	48	10	48	y	0.00	0	82	0	82	n	0.09	8	86	8	86	y	0.05	5	100	5	100	y	0.04	2	55	2	55	y	0.07	6	79	6	79	y	0.13	5	34	5	34	y	0.13	7	46	7	46	y	0.13	13	85	13	85	y	0.05	4	77	4	77	y	0.12	9	66	9	66	y	ENSMUSG00000032977.10	Fam207a	chr10	protein_coding	family with sequence similarity 207, member A
known_NIR_1796	chr10	77417761;77422238	77422159;77423085	+	77417761	77423085	cassetteExon	ENSMUST00000009435.12	known	0.00	1.0	394	0;2	394	n	0.00	0.0	281	0;0	281	n	0.00	0.0	347	0;0	347	n	0.00	0.0	527	0;0	527	n	0.00	0.5	615	0;1	615	n	0.00	0.0	245	0;0	245	n	0.01	3.0	569	2;4	569	y	0.00	0.0	311	0;0	311	n	0.00	0.0	325	0;0	325	n	0.00	0.5	552	0;1	552	n	0.00	0.0	372	0;0	372	n	0.00	0.0	437	0;0	437	n	ENSMUSG00000009291.14	Pttg1ip	chr10	protein_coding	pituitary tumor-transforming 1 interacting protein
known_NIR_1797	chr10	77442184	77445646	+	77442175	77445646	A5SS	ENSMUST00000020501.15	known	0.01	2	146	2	146	y	0.00	0	95	0	95	n	0.02	3	157	3	157	y	0.03	4	128	4	128	y	0.01	2	206	2	206	y	0.00	0	117	0	117	n	0.02	5	211	5	211	y	0.03	3	113	3	113	y	0.02	3	120	3	120	y	0.02	4	247	4	247	y	0.00	0	154	0	154	n	0.01	1	175	1	175	n	ENSMUSG00000020265.17	Sumo3	chr10	protein_coding	small ubiquitin-like modifier 3
known_NIR_1798	chr10	77442802	77445646	+	77442175	77445646	A5SS	ENSMUST00000020501.15	known	0.06	9	146	9	146	y	0.10	10	95	10	95	y	0.03	5	157	5	157	y	0.10	15	128	15	128	y	0.08	19	206	19	206	y	0.09	11	117	11	117	y	0.09	21	211	21	211	y	0.05	6	113	6	113	y	0.08	11	120	11	120	y	0.07	19	247	19	247	y	0.06	9	154	9	154	y	0.05	10	175	10	175	y	ENSMUSG00000020265.17	Sumo3	chr10	protein_coding	small ubiquitin-like modifier 3
known_NIR_1799	chr10	77442802	77445646	+	77442184	77445646	A5SS	ENSMUST00000129492.8	known	0.82	9	2	9	2	y	1.00	10	0	10	0	n	0.62	5	3	5	3	n	0.79	15	4	15	4	y	0.90	19	2	19	2	y	1.00	11	0	11	0	n	0.81	21	5	21	5	y	0.67	6	3	6	3	n	0.79	11	3	11	3	y	0.83	19	4	19	4	y	1.00	9	0	9	0	n	0.91	10	1	10	1	n	ENSMUSG00000020265.17	Sumo3	chr10	protein_coding	small ubiquitin-like modifier 3
known_NIR_1800	chr10	77449645	77449814	+	77445774	77449814	A5SS	ENSMUST00000020501.15	known	0.03	6	204	6	204	y	0.02	4	188	4	188	y	0.00	1	246	1	246	n	0.01	3	216	3	216	y	0.02	9	366	9	366	y	0.01	2	177	2	177	y	0.01	4	337	4	337	y	0.03	5	176	5	176	y	0.03	7	224	7	224	y	0.04	11	295	11	295	y	0.03	7	216	7	216	y	0.01	3	315	3	315	y	ENSMUSG00000020265.17	Sumo3	chr10	protein_coding	small ubiquitin-like modifier 3
known_NIR_1801	chr10	77449885	77452024	+	77449885	77451761	A3SS&ES	ENSMUST00000137841.9	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.90	19	2	19	2	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	13	0	13	0	n	ENSMUSG00000020265.17	Sumo3	chr10	protein_coding	small ubiquitin-like modifier 3
known_NIR_1802	chr10	77449885	77452024	+	77449885	77451982	A3SS	ENSMUST00000020501.15	known	0.00	0	186	0	186	n	0.00	0	160	0	160	n	0.00	0	219	0	219	n	0.00	0	201	0	201	n	0.05	19	362	19	362	y	0.00	0	163	0	163	n	0.00	0	313	0	313	n	0.00	0	176	0	176	n	0.00	0	209	0	209	n	0.00	0	309	0	309	n	0.00	0	216	0	216	n	0.05	13	274	13	274	y	ENSMUSG00000020265.17	Sumo3	chr10	protein_coding	small ubiquitin-like modifier 3
known_NIR_1803	chr10	77449885;77451868	77451761;77451982	+	77449885	77451982	cassetteExon	ENSMUST00000020501.15	known	0.01	1.0	186	0;2	186	n	0.00	0.0	160	0;0	160	n	0.01	1.5	219	0;3	219	n	0.00	0.5	201	1;0	201	n	0.01	2.5	362	2;3	362	y	0.01	1.0	163	1;1	163	n	0.01	4.5	313	3;6	313	y	0.01	1.5	176	0;3	176	n	0.00	0.5	209	0;1	209	n	0.00	0.5	309	1;0	309	n	0.00	0.5	216	1;0	216	n	0.00	1.0	274	0;2	274	n	ENSMUSG00000020265.17	Sumo3	chr10	protein_coding	small ubiquitin-like modifier 3
known_NIR_1804	chr10	77458250	77477294	+	77466728	77477294	A5SS&ES	ENSMUST00000174113.8	known	0.02	2	82	2	82	y	0.03	2	64	2	64	y	0.01	2	213	2	213	y	0.06	5	79	5	79	y	0.01	1	139	1	139	n	0.01	1	119	1	119	n	0.02	3	124	3	124	y	0.02	2	81	2	81	y	0.01	1	73	1	73	n	0.00	0	86	0	86	n	0.00	0	96	0	96	n	0.01	1	76	1	76	n	ENSMUSG00000112241.2	Gm49325	chr10	protein_coding	predicted gene, 49325
known_NIR_1805	chr10	77458250;77466728	77466560;77477294	+	77458250	77477294	cassetteExon	ENSMUST00000172813.2	known	0.98	98.0	2	114;82	2	y	0.97	69.0	2	74;64	2	y	0.99	245.0	2	277;213	2	y	0.95	87.5	5	96;79	5	y	0.99	151.5	1	164;139	1	n	0.99	123.5	1	128;119	1	n	0.98	130.5	3	137;124	3	y	0.98	104.5	2	128;81	2	y	0.99	73.0	1	73;73	1	n	1.00	82.5	0	79;86	0	n	1.00	99.5	0	103;96	0	n	0.99	76.0	1	76;76	1	n	ENSMUSG00000009293.18	Ube2g2	chr10	protein_coding	ubiquitin-conjugating enzyme E2G 2
known_NIR_1806	chr10	77458250;77466728	77466560;77479303	+	77458250;77477412	77477294;77479303	MXE	ENSMUST00000172813.2	known	0.42	57.0	77.5	114;0	2;153	n	0.35	37.0	68.0	74;0	2;134	n	0.48	138.5	149.0	277;0	2;296	n	0.43	48.0	62.5	96;0	5;120	n	0.44	82.0	103.5	164;0	1;206	n	0.42	64.0	87.0	128;0	1;173	n	0.40	68.5	102.5	137;0	3;202	n	0.47	65.0	72.0	128;2	2;142	y	0.43	36.5	48.5	73;0	1;96	n	0.43	39.5	51.5	79;0	0;103	n	0.49	51.5	54.0	103;0	0;108	n	0.39	39.0	62.0	76;2	1;123	n	ENSMUSG00000009293.18	Ube2g2	chr10	protein_coding	ubiquitin-conjugating enzyme E2G 2
known_NIR_1807	chr10	77466728	77479303	+	77466728	77477294	3pMXE	ENSMUST00000174113.8	known	0.00	0	82	0	82	n	0.00	0	64	0	64	n	0.00	0	213	0	213	n	0.00	0	79	0	79	n	0.00	0	139	0	139	n	0.00	0	119	0	119	n	0.00	0	124	0	124	n	0.02	2	81	2	81	y	0.00	0	73	0	73	n	0.00	0	86	0	86	n	0.00	0	96	0	96	n	0.03	2	76	2	76	y	ENSMUSG00000112241.2	Gm49325	chr10	protein_coding	predicted gene, 49325
known_NIR_1808	chr10	77466728	77479303	+	77466728;77477412	77477294;77479303	ES	ENSMUST00000174510.8	known	0.00	0	117.5	0	82;153	n	0.00	0	99.0	0	64;134	n	0.00	0	254.5	0	213;296	n	0.00	0	99.5	0	79;120	n	0.00	0	172.5	0	139;206	n	0.00	0	146.0	0	119;173	n	0.00	0	163.0	0	124;202	n	0.02	2	111.5	2	81;142	y	0.00	0	84.5	0	73;96	n	0.00	0	94.5	0	86;103	n	0.00	0	102.0	0	96;108	n	0.02	2	99.5	2	76;123	y	ENSMUSG00000009293.18	Ube2g2	chr10	protein_coding	ubiquitin-conjugating enzyme E2G 2
known_NIR_1809	chr10	77466728	77479303	+	77477412	77479303	5pMXE	ENSMUST00000173360.2	known	0.00	0	153	0	153	n	0.00	0	134	0	134	n	0.00	0	296	0	296	n	0.00	0	120	0	120	n	0.00	0	206	0	206	n	0.00	0	173	0	173	n	0.00	0	202	0	202	n	0.01	2	142	2	142	y	0.00	0	96	0	96	n	0.00	0	103	0	103	n	0.00	0	108	0	108	n	0.02	2	123	2	123	y	ENSMUSG00000009293.18	Ube2g2	chr10	protein_coding	ubiquitin-conjugating enzyme E2G 2
known_NIR_1810	chr10	77466728;77470619	77470494;77477294	+	77466728	77477294	cassetteExon	ENSMUST00000174113.8	known	0.01	1.0	82	1;1	82	n	0.01	0.5	64	0;1	64	n	0.01	3.0	213	5;1	213	n	0.00	0.0	79	0;0	79	n	0.02	2.5	139	1;4	139	n	0.02	2.5	119	3;2	119	y	0.00	0.5	124	1;0	124	n	0.03	2.5	81	3;2	81	y	0.00	0.0	73	0;0	73	n	0.02	1.5	86	3;0	86	n	0.03	2.5	96	2;3	96	y	0.02	1.5	76	3;0	76	n	ENSMUSG00000112241.2	Gm49325	chr10	protein_coding	predicted gene, 49325
known_NIR_1811	chr10	77815885	77816335	+	77815605	77816335	A5SS	ENSMUST00000105397.10	known	0.05	1	18	1	18	n	0.08	1	12	1	12	n	0.00	0	10	0	10	n	0.00	0	18	0	18	n	0.00	0	25	0	25	n	0.10	1	9	1	9	n	0.00	0	24	0	24	n	0.00	0	19	0	19	n	0.00	0	21	0	21	n	0.06	2	34	2	34	y	0.00	0	23	0	23	n	0.00	0	26	0	26	n	ENSMUSG00000020284.17	Cfap410	chr10	protein_coding	cilia and flagella associated protein 410
known_NIR_1812	chr10	77832592	77833358	-	77832246	77833358	A3SS	ENSMUST00000020522.9	known	0.00	0	77	0	77	n	0.02	1	54	1	54	n	0.10	11	98	11	98	y	0.03	2	72	2	72	y	0.02	2	96	2	96	y	0.00	0	40	0	40	n	0.01	1	71	1	71	n	0.06	3	46	3	46	y	0.00	0	38	0	38	n	0.01	1	94	1	94	n	0.04	2	48	2	48	y	0.01	1	96	1	96	n	ENSMUSG00000020277.11	Pfkl	chr10	protein_coding	phosphofructokinase, liver, B-type
known_NIR_1813	chr10	77999387	78003229	-	77999387;78000764	78000672;78003229	ES	ENSMUST00000001242.9	known	0.00	0	441.5	0	426;457	n	0.00	0	475.0	0	455;495	n	0.00	0	246.0	0	229;263	n	0.00	0	482.0	0	459;505	n	0.00	0	506.5	0	457;556	n	0.00	0	175.5	0	167;184	n	0.00	0	630.0	0	604;656	n	0.00	0	224.0	0	238;210	n	0.00	0	422.5	0	405;440	n	0.00	2	709.0	2	665;753	y	0.00	2	515.5	2	505;526	y	0.00	2	596.0	2	618;574	y	ENSMUSG00000053329.8	Gatd3a	chr10	protein_coding	glutamine amidotransferase like class 1 domain containing 3A
known_NIR_1814	chr10	7800636;7808972	7808832;7831565	-	7800636	7831565	cassetteExon	ENSMUST00000146444.8	known	0.14	2.5	16	2;3	16	y	0.16	1.5	8	3;0	8	n	0.16	7.5	39	9;6	39	y	0.23	5.0	17	6;4	17	y	0.20	11.0	45	16;6	45	y	0.13	4.5	29	6;3	29	y	0.20	8.0	32	13;3	32	y	0.20	5.0	20	10;0	20	n	0.09	1.5	15	2;1	15	n	0.17	6.0	29	11;1	29	n	0.18	2.0	9	3;1	9	n	0.31	8.0	18	9;7	18	y	ENSMUSG00000015755.17	Tab2	chr10	protein_coding	TGF-beta activated kinase 1/MAP3K7 binding protein 2
known_NIR_1815	chr10	78037420	78038714	-	78037424	78038714	A3SS	ENSMUST00000000384.8	known	0.00	0	17	0	17	n	0.00	0	24	0	24	n	0.05	3	52	3	52	y	0.03	1	39	1	39	n	0.02	1	44	1	44	n	0.00	0	21	0	21	n	0.05	2	35	2	35	y	0.00	0	31	0	31	n	0.00	0	23	0	23	n	0.12	4	28	4	28	y	0.06	2	29	2	29	y	0.00	0	43	0	43	n	ENSMUSG00000000374.9	Trappc10	chr10	protein_coding	trafficking protein particle complex 10
known_NIR_1816	chr10	78085087	78098905	-	78085087;78095750	78095638;78098905	ES	ENSMUST00000218662.2	known	0.00	0	8.5	0	11;6	n	0.12	2	14.0	2	16;12	y	0.00	0	5.5	0	7;4	n	0.18	2	9.0	2	7;11	y	0.00	0	18.0	0	18;18	n	0.00	0	2.0	0	1;3	n	0.34	5	9.5	5	11;8	y	0.00	0	2.5	0	3;2	n	0.00	0	8.0	0	10;6	n	0.12	2	15.0	2	15;15	y	0.00	0	7.5	0	5;10	n	0.27	3	8.0	3	8;8	y	ENSMUSG00000112433.2	Gm30122	chr10	lncRNA	predicted gene, 30122
known_NIR_1817	chr10	78120939	78123681	-	78120998	78123681	A3SS	ENSMUST00000001240.12	known	0.00	0	331	0	331	n	0.02	8	371	8	371	y	0.02	13	569	13	569	y	0.01	3	431	3	431	y	0.02	12	742	12	742	y	0.01	4	397	4	397	y	0.01	8	586	8	586	y	0.00	2	439	2	439	y	0.00	0	281	0	281	n	0.02	9	530	9	530	y	0.01	5	359	5	359	y	0.02	7	411	7	411	y	ENSMUSG00000001211.16	Agpat3	chr10	protein_coding	1-acylglycerol-3-phosphate O-acyltransferase 3
known_NIR_1818	chr10	78123907	78133659	-	78123907	78165110	A5SS	ENSMUST00000001240.12	known	0.06	17	252	17	252	y	0.07	18	234	18	234	y	0.26	122	341	122	341	y	0.05	18	330	18	330	y	0.06	34	500	34	500	y	0.12	35	255	35	255	y	0.13	58	374	58	374	y	0.11	36	286	36	286	y	0.02	4	224	4	224	y	0.07	30	389	30	389	y	0.10	33	300	33	300	y	0.04	11	287	11	287	y	ENSMUSG00000001211.16	Agpat3	chr10	protein_coding	1-acylglycerol-3-phosphate O-acyltransferase 3
known_NIR_1819	chr10	78123907	78143111	-	78123907	78133659	5pMXE	ENSMUST00000105389.8	known	0.00	0	17	0	17	n	0.00	0	18	0	18	n	0.00	0	122	0	122	n	0.00	0	18	0	18	n	0.00	0	34	0	34	n	0.03	1	35	1	35	n	0.03	2	58	2	58	y	0.00	0	36	0	36	n	0.00	0	4	0	4	n	0.00	0	30	0	30	n	0.00	0	33	0	33	n	0.00	0	11	0	11	n	ENSMUSG00000001211.16	Agpat3	chr10	protein_coding	1-acylglycerol-3-phosphate O-acyltransferase 3
known_NIR_1820	chr10	78123907	78143111	-	78123907	78165110	A5SS	ENSMUST00000001240.12	known	0.00	0	252	0	252	n	0.00	0	234	0	234	n	0.00	0	341	0	341	n	0.00	0	330	0	330	n	0.00	0	500	0	500	n	0.00	1	255	1	255	n	0.01	2	374	2	374	y	0.00	0	286	0	286	n	0.00	0	224	0	224	n	0.00	0	389	0	389	n	0.00	0	300	0	300	n	0.00	0	287	0	287	n	ENSMUSG00000001211.16	Agpat3	chr10	protein_coding	1-acylglycerol-3-phosphate O-acyltransferase 3
known_NIR_1821	chr10	78165170	78188047	-	78165170	78187461	5pMXE	ENSMUST00000166360.8	known	0.17	30	146	30	146	y	0.18	33	155	33	155	y	0.24	60	185	60	185	y	0.17	46	223	46	223	y	0.25	106	311	106	311	y	0.31	74	166	74	166	y	0.14	42	261	42	261	y	0.17	32	157	32	157	y	0.15	27	148	27	148	y	0.16	48	251	48	251	y	0.10	22	203	22	203	y	0.21	50	189	50	189	y	ENSMUSG00000001211.16	Agpat3	chr10	protein_coding	1-acylglycerol-3-phosphate O-acyltransferase 3
known_NIR_1822	chr10	78165170;78187545	78187461;78188047	-	78165170	78188047	cassetteExon	ENSMUST00000001240.12	known	0.76	95.5	30	146;45	30	y	0.76	104.5	33	155;54	33	y	0.67	122.0	60	185;59	60	y	0.76	143.0	46	223;63	46	y	0.66	202.5	106	311;94	106	y	0.61	114.0	74	166;62	74	y	0.79	156.5	42	261;52	42	y	0.75	96.5	32	157;36	32	y	0.78	94.0	27	148;40	27	y	0.77	162.5	48	251;74	48	y	0.86	134.0	22	203;65	22	y	0.72	126.0	50	189;63	50	y	ENSMUSG00000001211.16	Agpat3	chr10	protein_coding	1-acylglycerol-3-phosphate O-acyltransferase 3
known_NIR_1823	chr10	78187545	78188047	-	78187545	78187637	5pMXE	ENSMUST00000105390.8	known	1.00	45	0	45	0	n	1.00	54	0	54	0	n	1.00	59	0	59	0	n	1.00	63	0	63	0	n	1.00	94	0	94	0	n	1.00	62	0	62	0	n	0.96	52	2	52	2	y	1.00	36	0	36	0	n	0.98	40	1	40	1	n	0.99	74	1	74	1	n	0.98	65	1	65	1	n	0.98	63	1	63	1	n	ENSMUSG00000001211.16	Agpat3	chr10	protein_coding	1-acylglycerol-3-phosphate O-acyltransferase 3
known_NIR_1824	chr10	78246853	78247238	-	78246857	78247238	A3SS	ENSMUST00000062678.11	known	0.00	0	103	0	103	n	0.00	0	100	0	100	n	0.01	2	149	2	149	y	0.00	0	131	0	131	n	0.00	0	149	0	149	n	0.00	0	99	0	99	n	0.00	0	135	0	135	n	0.00	0	99	0	99	n	0.00	0	92	0	92	n	0.00	0	133	0	133	n	0.00	0	117	0	117	n	0.00	0	142	0	142	n	ENSMUSG00000061032.10	Rrp1	chr10	protein_coding	ribosomal RNA processing 1
known_NIR_1825	chr10	78246857	78248654	-	78246857	78247238	A5SS&ES	ENSMUST00000217835.2	known	0.00	0	103	0	103	n	0.00	0	100	0	100	n	0.00	0	149	0	149	n	0.00	0	131	0	131	n	0.02	3	149	3	149	y	0.00	0	99	0	99	n	0.00	0	135	0	135	n	0.00	0	99	0	99	n	0.00	0	92	0	92	n	0.00	0	133	0	133	n	0.00	0	117	0	117	n	0.00	0	142	0	142	n	ENSMUSG00000061032.10	Rrp1	chr10	protein_coding	ribosomal RNA processing 1
known_NIR_1826	chr10	78246857	78248654	-	78247320	78248654	A3SS&ES	ENSMUST00000217824.2	known	0.00	0	103	0	103	n	0.00	0	83	0	83	n	0.00	0	140	0	140	n	0.00	0	95	0	95	n	0.02	3	122	3	122	y	0.00	0	87	0	87	n	0.00	0	101	0	101	n	0.00	0	61	0	61	n	0.00	0	74	0	74	n	0.00	0	101	0	101	n	0.00	0	108	0	108	n	0.00	0	107	0	107	n	ENSMUSG00000061032.10	Rrp1	chr10	protein_coding	ribosomal RNA processing 1
known_NIR_1827	chr10	78246857;78247320	78247238;78248654	-	78246857	78248654	cassetteExon	ENSMUST00000219374.2	known	1.00	103.0	0	103;103	0	n	1.00	91.5	0	100;83	0	n	1.00	144.5	0	149;140	0	n	1.00	113.0	0	131;95	0	n	0.98	135.5	3	149;122	3	y	1.00	93.0	0	99;87	0	n	1.00	118.0	0	135;101	0	n	1.00	80.0	0	99;61	0	n	1.00	83.0	0	92;74	0	n	1.00	117.0	0	133;101	0	n	1.00	112.5	0	117;108	0	n	1.00	124.5	0	142;107	0	n	ENSMUSG00000061032.10	Rrp1	chr10	protein_coding	ribosomal RNA processing 1
known_NIR_1828	chr10	78247320	78248483	-	78247320	78248654	A5SS	ENSMUST00000062678.11	known	0.01	1	103	1	103	n	0.00	0	83	0	83	n	0.00	0	140	0	140	n	0.03	3	95	3	95	y	0.02	2	122	2	122	y	0.00	0	87	0	87	n	0.03	3	101	3	101	y	0.02	1	61	1	61	n	0.01	1	74	1	74	n	0.01	1	101	1	101	n	0.01	1	108	1	108	n	0.03	3	107	3	107	y	ENSMUSG00000061032.10	Rrp1	chr10	protein_coding	ribosomal RNA processing 1
known_NIR_1829	chr10	78247320	78248721	-	78247320	78248654	A5SS	ENSMUST00000062678.11	known	0.00	0	103	0	103	n	0.00	0	83	0	83	n	0.00	0	140	0	140	n	0.00	0	95	0	95	n	0.05	7	122	7	122	y	0.00	0	87	0	87	n	0.00	0	101	0	101	n	0.05	3	61	3	61	y	0.00	0	74	0	74	n	0.00	0	101	0	101	n	0.00	0	108	0	108	n	0.00	0	107	0	107	n	ENSMUSG00000061032.10	Rrp1	chr10	protein_coding	ribosomal RNA processing 1
known_NIR_1830	chr10	78410499	78410921	+	78410668	78410921	A5SS	ENSMUST00000218787.2	known	0.33	1	2	1	2	n	0.40	2	3	2	3	n	0.25	2	6	2	6	n	0.50	4	4	4	4	n	0.50	3	3	3	3	n	0.33	2	4	2	4	n	0.40	2	3	2	3	n	0.75	3	1	3	1	n	0.33	1	2	1	2	n	0.36	4	7	4	7	y	0.22	2	7	2	7	n	0.56	9	7	9	7	y	ENSMUSG00000032763.12	Ilvbl	chr10	protein_coding	ilvB (bacterial acetolactate synthase)-like
known_NIR_1831	chr10	78417024	78417248	+	78417024	78418849	A3SS	ENSMUST00000105384.5	known	0.00	0	73	0	73	n	0.00	0	77	0	77	n	0.01	1	80	1	80	n	0.04	3	72	3	72	y	0.02	2	119	2	119	y	0.00	0	55	0	55	n	0.00	0	115	0	115	n	0.04	2	52	2	52	y	0.02	1	52	1	52	n	0.00	0	95	0	95	n	0.01	1	71	1	71	n	0.02	1	62	1	62	n	ENSMUSG00000032763.12	Ilvbl	chr10	protein_coding	ilvB (bacterial acetolactate synthase)-like
known_NIR_1832	chr10	79366606	79369458	-	79366606	79366711	A5SS&ES	ENSMUST00000163602.9	known	0.04	4	93	4	93	y	0.04	4	89	4	89	y	0.01	2	150	2	150	y	0.06	7	113	7	113	y	0.06	9	135	9	135	y	0.02	1	65	1	65	n	0.06	8	125	8	125	y	0.00	0	95	0	95	n	0.04	3	74	3	74	y	0.05	7	125	7	125	y	0.02	2	86	2	86	y	0.01	2	163	2	163	y	ENSMUSG00000052151.13	Plpp2	chr10	protein_coding	phospholipid phosphatase 2
known_NIR_1833	chr10	79366606	79369458	-	79366606	79369499	A5SS	ENSMUST00000218241.2	known	0.57	4	3	4	3	n	1.00	4	0	4	0	n	1.00	2	0	2	0	n	1.00	7	0	7	0	n	0.90	9	1	9	1	n	1.00	1	0	1	0	n	0.73	8	3	8	3	y	-	-	-	-	-	-	1.00	3	0	3	0	n	0.70	7	3	7	3	y	1.00	2	0	2	0	n	0.40	2	3	2	3	n	ENSMUSG00000052151.13	Plpp2	chr10	protein_coding	phospholipid phosphatase 2
known_NIR_1834	chr10	79366606	79369458	-	79366606;79366815	79366711;79369458	ES	ENSMUST00000166804.2	known	0.08	4	46.5	4	93;0	n	0.08	4	44.5	4	89;0	n	0.03	2	75.0	2	150;0	n	0.11	7	56.5	7	113;0	n	0.12	9	69.0	9	135;3	y	0.03	1	32.5	1	65;0	n	0.11	8	64.5	8	125;4	y	0.00	0	47.5	0	95;0	n	0.07	3	37.0	3	74;0	n	0.10	7	62.5	7	125;0	n	0.04	2	43.0	2	86;0	n	0.02	2	81.5	2	163;0	n	ENSMUSG00000052151.13	Plpp2	chr10	protein_coding	phospholipid phosphatase 2
known_NIR_1835	chr10	79366606	79369458	-	79366606;79366862	79366711;79369458	ES	ENSMUST00000063879.13	known	0.06	4	64.5	4	93;36	y	0.06	4	67.0	4	89;45	y	0.02	2	110.5	2	150;71	y	0.08	7	78.0	7	113;43	y	0.08	9	109.0	9	135;83	y	0.02	1	48.0	1	65;31	n	0.08	8	98.0	8	125;71	y	0.00	0	68.0	0	95;41	n	0.06	3	51.5	3	74;29	y	0.07	7	93.0	7	125;61	y	0.03	2	61.5	2	86;37	y	0.02	2	116.5	2	163;70	y	ENSMUSG00000052151.13	Plpp2	chr10	protein_coding	phospholipid phosphatase 2
known_NIR_1836	chr10	79366606	79369499	-	79366606	79366711	A5SS&ES	ENSMUST00000063879.13	known	0.03	3	93	3	93	y	0.00	0	89	0	89	n	0.00	0	150	0	150	n	0.00	0	113	0	113	n	0.01	1	135	1	135	n	0.00	0	65	0	65	n	0.02	3	125	3	125	y	0.00	0	95	0	95	n	0.00	0	74	0	74	n	0.02	3	125	3	125	y	0.00	0	86	0	86	n	0.02	3	163	3	163	y	ENSMUSG00000052151.13	Plpp2	chr10	protein_coding	phospholipid phosphatase 2
known_NIR_1837	chr10	79366606	79369499	-	79366606;79366862	79366711;79369499	ES	ENSMUST00000163602.9	known	0.06	3	50.5	3	93;8	y	0.00	0	47.5	0	89;6	n	0.00	0	78.0	0	150;6	n	0.00	0	59.0	0	113;5	n	0.01	1	75.5	1	135;16	n	0.00	0	34.0	0	65;3	n	0.04	3	68.0	3	125;11	y	0.00	0	48.5	0	95;2	n	0.00	0	38.5	0	74;3	n	0.04	3	67.5	3	125;10	y	0.00	0	45.0	0	86;4	n	0.03	3	86.5	3	163;10	y	ENSMUSG00000052151.13	Plpp2	chr10	protein_coding	phospholipid phosphatase 2
known_NIR_1838	chr10	79366815	79369458	-	79366862	79369458	A3SS	ENSMUST00000063879.13	known	0.00	0	36	0	36	n	0.00	0	45	0	45	n	0.00	0	71	0	71	n	0.00	0	43	0	43	n	0.03	3	83	3	83	y	0.00	0	31	0	31	n	0.05	4	71	4	71	y	0.00	0	41	0	41	n	0.00	0	29	0	29	n	0.00	0	61	0	61	n	0.00	0	37	0	37	n	0.00	0	70	0	70	n	ENSMUSG00000052151.13	Plpp2	chr10	protein_coding	phospholipid phosphatase 2
known_NIR_1839	chr10	79366862	79369458	-	79366862	79369499	A5SS	ENSMUST00000163602.9	known	0.82	36	8	36	8	y	0.88	45	6	45	6	y	0.92	71	6	71	6	y	0.90	43	5	43	5	y	0.84	83	16	83	16	y	0.91	31	3	31	3	y	0.87	71	11	71	11	y	0.95	41	2	41	2	y	0.91	29	3	29	3	y	0.86	61	10	61	10	y	0.90	37	4	37	4	y	0.88	70	10	70	10	y	ENSMUSG00000052151.13	Plpp2	chr10	protein_coding	phospholipid phosphatase 2
known_NIR_1840	chr10	79384743	79385018	-	79384737	79385018	A3SS	ENSMUST00000062855.15	known	1.00	12	0	12	0	n	0.93	13	1	13	1	n	0.96	25	1	25	1	n	0.94	16	1	16	1	n	0.92	22	2	22	2	y	0.95	20	1	20	1	n	1.00	23	0	23	0	n	1.00	14	0	14	0	n	1.00	11	0	11	0	n	1.00	21	0	21	0	n	0.93	13	1	13	1	n	0.92	12	1	12	1	n	ENSMUSG00000042570.15	Mier2	chr10	protein_coding	MIER family member 2
known_NIR_1841	chr10	79385687	79386150	-	79385513	79386150	A3SS	ENSMUST00000062855.15	known	0.19	3	13	3	13	y	0.00	0	10	0	10	n	0.29	5	12	5	12	y	0.00	0	8	0	8	n	0.05	1	18	1	18	n	0.42	5	7	5	7	y	0.00	0	8	0	8	n	0.08	1	12	1	12	n	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.58	7	5	7	5	y	0.24	5	16	5	16	y	ENSMUSG00000042570.15	Mier2	chr10	protein_coding	MIER family member 2
known_NIR_1842	chr10	79386240	79390380	-	79386240	79390908	A5SS	ENSMUST00000062855.15	known	0.17	1	5	1	5	n	-	-	-	-	-	-	0.30	3	7	3	7	y	0.40	2	3	2	3	n	0.38	3	5	3	5	n	0.29	2	5	2	5	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.33	2	4	2	4	n	0.60	3	2	3	2	n	1.00	1	0	1	0	n	0.55	6	5	6	5	y	ENSMUSG00000042570.15	Mier2	chr10	protein_coding	MIER family member 2
known_NIR_1843	chr10	79505885	79511234	+	79505617	79511234	A5SS	ENSMUST00000020552.8	known	0.00	0	74	0	74	n	0.00	0	78	0	78	n	0.00	0	87	0	87	n	0.00	0	94	0	94	n	0.03	3	100	3	100	y	0.00	0	54	0	54	n	0.01	1	104	1	104	n	0.00	0	59	0	59	n	0.00	0	64	0	64	n	0.00	0	104	0	104	n	0.00	0	87	0	87	n	0.05	4	80	4	80	y	ENSMUSG00000020308.8	Tpgs1	chr10	protein_coding	tubulin polyglutamylase complex subunit 1
known_NIR_1844	chr10	79520236	79520652	+	79518424	79520652	A5SS	ENSMUST00000020550.13	known	0.00	0	366	0	366	n	0.01	4	394	4	394	y	0.00	0	358	0	358	n	0.01	3	354	3	354	y	0.00	0	532	0	532	n	0.00	0	286	0	286	n	0.00	0	435	0	435	n	0.00	0	271	0	271	n	0.01	3	332	3	332	y	0.00	0	435	0	435	n	0.01	3	418	3	418	y	0.00	0	371	0	371	n	ENSMUSG00000020307.16	Cdc34	chr10	protein_coding	cell division cycle 34
known_NIR_1845	chr10	79520936	79521014	+	79520936	79521067	A3SS	ENSMUST00000020550.13	known	0.01	3	306	3	306	y	0.00	1	347	1	347	n	0.01	3	308	3	308	y	0.00	1	270	1	270	n	0.00	2	438	2	438	y	0.00	0	200	0	200	n	0.00	1	429	1	429	n	0.01	1	173	1	173	n	0.00	0	227	0	227	n	0.00	1	402	1	402	n	0.00	0	376	0	376	n	0.00	0	324	0	324	n	ENSMUSG00000020307.16	Cdc34	chr10	protein_coding	cell division cycle 34
known_NIR_1846	chr10	79520936	79523683	+	79520936	79521014	3pMXE	ENSMUST00000219074.2	known	0.73	8	3	8	3	y	0.91	10	1	10	1	n	0.82	14	3	14	3	y	0.95	18	1	18	1	n	0.85	11	2	11	2	y	1.00	4	0	4	0	n	0.93	13	1	13	1	n	0.89	8	1	8	1	n	1.00	9	0	9	0	n	0.94	17	1	17	1	n	1.00	10	0	10	0	n	1.00	9	0	9	0	n	ENSMUSG00000020307.16	Cdc34	chr10	protein_coding	cell division cycle 34
known_NIR_1847	chr10	79520936	79523683	+	79520936	79521067	A3SS&ES	ENSMUST00000219930.2	known	0.03	8	306	8	306	y	0.03	10	347	10	347	y	0.04	14	308	14	308	y	0.06	18	270	18	270	y	0.02	11	438	11	438	y	0.02	4	200	4	200	y	0.03	13	429	13	429	y	0.04	8	173	8	173	y	0.04	9	227	9	227	y	0.04	17	402	17	402	y	0.03	10	376	10	376	y	0.03	9	324	9	324	y	ENSMUSG00000020307.16	Cdc34	chr10	protein_coding	cell division cycle 34
known_NIR_1848	chr10	79520936	79523683	+	79520936;79521201	79521067;79523683	ES	ENSMUST00000020550.13	known	0.02	8	319.0	8	306;332	y	0.03	10	369.5	10	347;392	y	0.04	14	328.0	14	308;348	y	0.06	18	309.0	18	270;348	y	0.02	11	430.0	11	438;422	y	0.02	4	188.0	4	200;176	y	0.03	13	429.0	13	429;429	y	0.04	8	177.5	8	173;182	y	0.04	9	243.0	9	227;259	y	0.04	17	397.5	17	402;393	y	0.02	10	395.5	10	376;415	y	0.03	9	338.5	9	324;353	y	ENSMUSG00000020307.16	Cdc34	chr10	protein_coding	cell division cycle 34
known_NIR_1849	chr10	79520936;79521201	79521014;79523683	+	79520936	79523683	cassetteExon	ENSMUST00000219791.2	known	0.95	167.5	8	3;332	8	y	0.95	196.5	10	1;392	10	n	0.93	175.5	14	3;348	14	y	0.91	174.5	18	1;348	18	n	0.95	212.0	11	2;422	11	y	0.96	88.0	4	0;176	4	n	0.94	215.0	13	1;429	13	n	0.92	91.5	8	1;182	8	n	0.94	129.5	9	0;259	9	n	0.92	197.0	17	1;393	17	n	0.95	207.5	10	0;415	10	n	0.95	176.5	9	0;353	9	n	ENSMUSG00000020307.16	Cdc34	chr10	protein_coding	cell division cycle 34
known_NIR_1850	chr10	79521201	79523687	+	79521201	79523683	A3SS	ENSMUST00000020550.13	known	0.12	44	332	44	332	y	0.11	50	392	50	392	y	0.13	50	348	50	348	y	0.08	29	348	29	348	y	0.09	44	422	44	422	y	0.14	28	176	28	176	y	0.11	55	429	55	429	y	0.10	21	182	21	182	y	0.15	47	259	47	259	y	0.10	44	393	44	393	y	0.13	60	415	60	415	y	0.11	44	353	44	353	y	ENSMUSG00000020307.16	Cdc34	chr10	protein_coding	cell division cycle 34
known_NIR_1851	chr10	79521201	79523687	+	79521201	79523690	A3SS	ENSMUST00000220133.2	known	0.72	44	17	44	17	y	0.82	50	11	50	11	y	0.70	50	21	50	21	y	0.64	29	16	29	16	y	0.66	44	23	44	23	y	0.74	28	10	28	10	y	0.80	55	14	55	14	y	0.75	21	7	21	7	y	0.89	47	6	47	6	y	0.79	44	12	44	12	y	0.83	60	12	60	12	y	0.75	44	15	44	15	y	ENSMUSG00000020307.16	Cdc34	chr10	protein_coding	cell division cycle 34
known_NIR_1852	chr10	79521201	79523690	+	79521201	79523683	A3SS	ENSMUST00000020550.13	known	0.05	17	332	17	332	y	0.03	11	392	11	392	y	0.06	21	348	21	348	y	0.04	16	348	16	348	y	0.05	23	422	23	422	y	0.05	10	176	10	176	y	0.03	14	429	14	429	y	0.04	7	182	7	182	y	0.02	6	259	6	259	y	0.03	12	393	12	393	y	0.03	12	415	12	415	y	0.04	15	353	15	353	y	ENSMUSG00000020307.16	Cdc34	chr10	protein_coding	cell division cycle 34
known_NIR_1853	chr10	79540418;79544878	79544531;79545505	+	79540418	79545505	cassetteExon	ENSMUST00000179781.8	known	0.03	22.5	804	6;39	804	y	0.02	17.0	859	14;20	859	y	0.02	14.5	784	9;20	784	y	0.03	31.5	1043	26;37	1043	y	0.03	37.0	1186	26;48	1186	y	0.02	13.5	549	10;17	549	y	0.02	23.0	1251	16;30	1251	y	0.02	13.5	586	8;19	586	y	0.02	14.5	668	10;19	668	y	0.02	26.5	1130	19;34	1130	y	0.03	25.5	801	20;31	801	y	0.02	18.0	868	10;26	868	y	ENSMUSG00000023175.16	Bsg	chr10	protein_coding	basigin
known_NIR_1854	chr10	79546236	79546459	+	79546236	79546472	A3SS	ENSMUST00000179781.8	known	0.00	1	1768	1	1768	n	0.00	1	2030	1	2030	n	0.00	2	1673	2	1673	y	0.00	0	1980	0	1980	n	0.00	2	2441	2	2441	y	0.00	0	1107	0	1107	n	0.00	0	2549	0	2549	n	0.00	0	1131	0	1131	n	0.00	0	1538	0	1538	n	0.00	3	2440	3	2440	y	0.00	0	1853	0	1853	n	0.00	0	1889	0	1889	n	ENSMUSG00000023175.16	Bsg	chr10	protein_coding	basigin
known_NIR_1855	chr10	79574244	79574516	-	79574284	79574516	A3SS	ENSMUST00000159082.8	known	0.00	0	32	0	32	n	0.00	0	35	0	35	n	0.00	0	37	0	37	n	0.08	3	36	3	36	y	0.00	0	44	0	44	n	0.00	0	17	0	17	n	0.00	0	32	0	32	n	0.00	0	13	0	13	n	0.09	2	20	2	20	y	0.05	2	38	2	38	y	0.05	1	19	1	19	n	0.02	1	44	1	44	n	ENSMUSG00000020329.13	Polrmt	chr10	protein_coding	polymerase (RNA) mitochondrial (DNA directed)
known_NIR_1856	chr10	79579562;79579853	79579713;79581508	-	79579562	79581508	cassetteExon	ENSMUST00000161765.8	known	0.00	0.0	14	0;0	14	n	0.00	0.0	8	0;0	8	n	0.02	0.5	24	0;1	24	n	0.02	0.5	25	0;1	25	n	0.11	3.0	25	4;2	25	y	0.00	0.0	10	0;0	10	n	0.00	0.0	22	0;0	22	n	0.00	0.0	14	0;0	14	n	0.00	0.0	23	0;0	23	n	0.04	1.0	22	1;1	22	n	0.08	1.0	11	2;0	11	n	0.00	0.0	21	0;0	21	n	ENSMUSG00000020329.13	Polrmt	chr10	protein_coding	polymerase (RNA) mitochondrial (DNA directed)
known_NIR_1857	chr10	79596916	79597399	-	79596916	79597264	A5SS	ENSMUST00000219189.2	known	0.04	3	69	3	69	y	0.04	4	104	4	104	y	0.04	5	109	5	109	y	0.02	2	87	2	87	y	0.04	5	136	5	136	y	0.04	3	75	3	75	y	0.00	0	94	0	94	n	0.01	1	88	1	88	n	0.07	5	67	5	67	y	0.02	2	96	2	96	y	0.02	2	80	2	80	y	0.02	2	83	2	83	y	ENSMUSG00000035890.10	Rnf126	chr10	protein_coding	ring finger protein 126
known_NIR_1858	chr10	79596916	79597399	-	79596916;79597333	79597264;79597399	ES	ENSMUST00000047203.9	known	0.04	3	75.5	3	69;82	y	0.04	4	102.5	4	104;101	y	0.05	5	102.5	5	109;96	y	0.03	2	74.0	2	87;61	y	0.04	5	126.5	5	136;117	y	0.03	3	83.0	3	75;91	y	0.00	0	97.0	0	94;100	n	0.01	1	80.0	1	88;72	n	0.08	5	61.5	5	67;56	y	0.02	2	92.0	2	96;88	y	0.02	2	85.0	2	80;90	y	0.03	2	71.0	2	83;59	y	ENSMUSG00000035890.10	Rnf126	chr10	protein_coding	ring finger protein 126
known_NIR_1859	chr10	79651075	79654875	+	79651075;79652757	79652626;79654875	ES	ENSMUST00000046945.13	known	0.00	0	2.0	0	2;2	n	0.50	1	1.0	1	0;2	n	0.75	3	1.0	3	1;1	n	0.57	2	1.5	2	2;1	n	0.00	0	2.0	0	3;1	n	-	-	-	-	-	-	0.25	2	6.0	2	4;8	y	0.00	0	1.5	0	1;2	n	0.00	0	1.5	0	0;3	n	0.00	0	2.0	0	1;3	n	0.80	2	0.5	2	1;0	n	0.00	0	1.5	0	3;0	n	ENSMUSG00000035863.15	Palm	chr10	protein_coding	paralemmin
known_NIR_1860	chr10	79690555	79694586	+	79690555;79692368	79692338;79694586	ES	ENSMUST00000172282.8	known	0.03	3	106.0	3	87;125	y	0.02	2	88.5	2	80;97	y	0.01	3	311.5	3	275;348	y	0.01	1	181.0	1	164;198	n	0.01	1	171.5	1	149;194	n	0.02	3	130.5	3	118;143	y	0.00	0	168.0	0	148;188	n	0.00	0	110.0	0	94;126	n	0.00	0	128.5	0	109;148	n	0.00	0	182.0	0	154;210	n	0.00	0	113.0	0	92;134	n	0.00	0	157.0	0	134;180	n	ENSMUSG00000006498.17	Ptbp1	chr10	protein_coding	polypyrimidine tract binding protein 1
known_NIR_1861	chr10	79690997	79692338	+	79690555	79692338	A5SS	ENSMUST00000172282.8	known	0.00	0	87	0	87	n	0.00	0	80	0	80	n	0.00	0	275	0	275	n	0.00	0	164	0	164	n	0.00	0	149	0	149	n	0.00	0	118	0	118	n	0.00	0	148	0	148	n	0.00	0	94	0	94	n	0.08	9	109	9	109	y	0.00	0	154	0	154	n	0.00	0	92	0	92	n	0.00	0	134	0	134	n	ENSMUSG00000006498.17	Ptbp1	chr10	protein_coding	polypyrimidine tract binding protein 1
known_NIR_1862	chr10	79694658	79694906	+	79694658	79694786	A3SS	ENSMUST00000172282.8	known	0.01	1	121	1	121	n	0.03	3	94	3	94	y	0.01	2	308	2	308	y	0.01	1	175	1	175	n	0.02	3	194	3	194	y	0.00	0	141	0	141	n	0.03	5	160	5	160	y	0.01	1	116	1	116	n	0.00	0	125	0	125	n	0.03	6	211	6	211	y	0.00	0	125	0	125	n	0.01	1	168	1	168	n	ENSMUSG00000006498.17	Ptbp1	chr10	protein_coding	polypyrimidine tract binding protein 1
known_NIR_1863	chr10	79695789	79696658	+	79695789	79695951	3pMXE	ENSMUST00000171216.2	known	0.47	44	50	44	50	y	0.35	33	62	33	62	y	0.48	134	144	134	144	y	0.33	38	78	38	78	y	0.34	60	119	60	119	y	0.43	46	60	46	60	y	0.41	53	76	53	76	y	0.40	36	53	36	53	y	0.47	42	47	42	47	y	0.38	62	100	62	100	y	0.35	39	71	39	71	y	0.44	57	74	57	74	y	ENSMUSG00000006498.17	Ptbp1	chr10	protein_coding	polypyrimidine tract binding protein 1
known_NIR_1864	chr10	79695789	79696658	+	79695789;79696028	79695951;79696658	ES	ENSMUST00000172282.8	known	0.44	44	57.0	44	50;64	y	0.33	33	66.0	33	62;70	y	0.49	134	138.5	134	144;133	y	0.33	38	78.5	38	78;79	y	0.34	60	116.0	60	119;113	y	0.43	46	61.5	46	60;63	y	0.41	53	75.0	53	76;74	y	0.39	36	57.5	36	53;62	y	0.46	42	49.0	42	47;51	y	0.36	62	110.0	62	100;120	y	0.34	39	77.0	39	71;83	y	0.41	57	82.5	57	74;91	y	ENSMUSG00000006498.17	Ptbp1	chr10	protein_coding	polypyrimidine tract binding protein 1
known_NIR_1865	chr10	79696803	79698283	+	79696803;79697881	79697848;79698283	ES	ENSMUST00000172282.8	known	0.04	3	76.0	3	75;77	y	0.09	7	73.5	7	75;72	y	0.03	9	253.0	9	255;251	y	0.05	6	122.5	6	117;128	y	0.08	12	145.5	12	158;133	y	0.03	3	95.0	3	91;99	y	0.07	9	117.5	9	114;121	y	0.06	5	79.0	5	79;79	y	0.07	7	95.5	7	92;99	y	0.01	1	136.0	1	144;128	n	0.06	7	111.5	7	120;103	y	0.05	7	127.5	7	119;136	y	ENSMUSG00000006498.17	Ptbp1	chr10	protein_coding	polypyrimidine tract binding protein 1
known_NIR_1866	chr10	79696803	79698283	+	79697881	79698283	5pMXE	ENSMUST00000164385.8	known	0.04	3	77	3	77	y	0.09	7	72	7	72	y	0.03	9	251	9	251	y	0.04	6	128	6	128	y	0.08	12	133	12	133	y	0.03	3	99	3	99	y	0.07	9	121	9	121	y	0.06	5	79	5	79	y	0.07	7	99	7	99	y	0.01	1	128	1	128	n	0.06	7	103	7	103	y	0.05	7	136	7	136	y	ENSMUSG00000006498.17	Ptbp1	chr10	protein_coding	polypyrimidine tract binding protein 1
known_NIR_1867	chr10	79717999	79718623	+	79717999	79718652	A3SS	ENSMUST00000163188.8	known	0.00	1	257	1	257	n	0.01	2	367	2	367	y	0.00	0	18	0	18	n	0.02	3	190	3	190	y	0.02	4	233	4	233	y	0.00	0	10	0	10	n	0.00	0	125	0	125	n	0.00	0	37	0	37	n	0.00	0	226	0	226	n	0.01	3	292	3	292	y	0.01	1	149	1	149	n	0.01	2	237	2	237	y	ENSMUSG00000057729.13	Prtn3	chr10	protein_coding	proteinase 3
known_NIR_1868	chr10	79726814	79727290	+	79726814	79727293	A3SS	ENSMUST00000217837.2	known	1.00	2	0	2	0	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.38	5	8	5	8	y	-	-	-	-	-	-	0.52	13	12	13	12	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.38	11	18	11	18	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000061780.7	Cfd	chr10	protein_coding	complement factor D (adipsin)
known_NIR_1869	chr10	79743490	79744652	-	79743487	79744652	A3SS	ENSMUST00000105378.9	known	0.89	39	5	39	5	y	0.79	15	4	15	4	y	1.00	31	0	31	0	n	0.93	25	2	25	2	y	0.95	39	2	39	2	y	0.94	17	1	17	1	n	0.85	35	6	35	6	y	0.83	10	2	10	2	y	1.00	11	0	11	0	n	0.77	24	7	24	7	y	0.88	21	3	21	3	y	0.89	42	5	42	5	y	ENSMUSG00000013833.16	Med16	chr10	protein_coding	mediator complex subunit 16
known_NIR_1870	chr10	79749180	79752657	-	79749180;79749545	79749391;79752657	ES	ENSMUST00000045628.15	known	0.00	0	96.0	0	94;98	n	0.01	1	102.5	1	115;90	n	0.00	0	126.0	0	139;113	n	0.00	0	131.5	0	153;110	n	0.00	0	162.5	0	185;140	n	0.00	0	90.5	0	100;81	n	0.00	0	189.0	0	214;164	n	0.00	0	91.0	0	100;82	n	0.00	0	104.5	0	124;85	n	0.01	2	185.0	2	208;162	y	0.01	1	123.5	1	132;115	n	0.00	0	145.0	0	162;128	n	ENSMUSG00000035781.15	R3hdm4	chr10	protein_coding	R3H domain containing 4
known_NIR_1871	chr10	79749180;79749515	79749391;79752657	-	79749180	79752657	cassetteExon	ENSMUST00000218970.2	known	1.00	47.0	0	94;0	0	n	0.98	59.5	1	115;4	1	n	1.00	71.0	0	139;3	0	n	1.00	78.0	0	153;3	0	n	1.00	93.5	0	185;2	0	n	1.00	50.5	0	100;1	0	n	1.00	108.5	0	214;3	0	n	1.00	50.5	0	100;1	0	n	1.00	62.0	0	124;0	0	n	0.98	105.0	2	208;2	2	y	0.99	67.5	1	132;3	1	n	1.00	81.0	0	162;0	0	n	ENSMUSG00000035781.15	R3hdm4	chr10	protein_coding	R3H domain containing 4
known_NIR_1872	chr10	79749515	79752657	-	79749545	79752657	A3SS	ENSMUST00000045628.15	known	0.00	0	98	0	98	n	0.04	4	90	4	90	y	0.03	3	113	3	113	y	0.03	3	110	3	110	y	0.01	2	140	2	140	y	0.01	1	81	1	81	n	0.02	3	164	3	164	y	0.01	1	82	1	82	n	0.00	0	85	0	85	n	0.01	2	162	2	162	y	0.03	3	115	3	115	y	0.00	0	128	0	128	n	ENSMUSG00000035781.15	R3hdm4	chr10	protein_coding	R3H domain containing 4
known_NIR_1873	chr10	79843062	79843134	+	79843062	79843158	A3SS	ENSMUST00000132517.8	known	0.33	1	2	1	2	n	0.50	1	1	1	1	n	1.00	6	0	6	0	n	0.33	1	2	1	2	n	0.67	4	2	4	2	n	0.73	8	3	8	3	y	1.00	7	0	7	0	n	1.00	2	0	2	0	n	1.00	1	0	1	0	n	0.57	4	3	4	3	n	0.00	0	2	0	2	n	0.75	3	1	3	1	n	ENSMUSG00000035722.16	Abca7	chr10	protein_coding	ATP-binding cassette, sub-family A (ABC1), member 7
known_NIR_1874	chr10	79890134	79890348	+	79889549	79890348	A5SS	ENSMUST00000105372.9	known	0.00	2	917	2	917	y	0.00	2	924	2	924	y	0.00	0	806	0	806	n	0.00	1	899	1	899	n	0.00	1	1300	1	1300	n	0.00	0	528	0	528	n	0.00	5	1297	5	1297	y	0.00	1	522	1	522	n	0.00	2	759	2	759	y	0.00	0	1364	0	1364	n	0.00	4	1060	4	1060	y	0.00	5	1056	5	1056	y	ENSMUSG00000075706.12	Gpx4	chr10	protein_coding	glutathione peroxidase 4
known_NIR_1875	chr10	79890442;79890678	79890534;79890802	+	79890442	79890802	cassetteExon	ENSMUST00000144698.8	known	1.00	1783.5	2	1803;1764	2	y	1.00	1703.5	0	1713;1694	0	n	1.00	1489.0	1	1472;1506	1	n	1.00	1550.5	6	1578;1523	6	y	1.00	2207.5	0	2272;2143	0	n	1.00	980.5	0	990;971	0	n	1.00	2435.0	0	2382;2488	0	n	1.00	899.0	0	911;887	0	n	1.00	1372.5	2	1358;1387	2	y	1.00	2375.0	3	2337;2413	3	y	1.00	1962.5	0	1978;1947	0	n	1.00	1885.0	2	1907;1863	2	y	ENSMUSG00000075706.12	Gpx4	chr10	protein_coding	glutathione peroxidase 4
known_NIR_1876	chr10	79894563	79894639	-	79894566	79894639	A3SS	ENSMUST00000219260.2	known	0.80	40	10	40	10	y	0.80	41	10	41	10	y	0.83	123	26	123	26	y	0.83	45	9	45	9	y	0.91	82	8	82	8	y	0.91	64	6	64	6	y	0.92	82	7	82	7	y	0.91	53	5	53	5	y	0.89	24	3	24	3	y	0.88	60	8	60	8	y	0.87	33	5	33	5	y	1.00	38	0	38	0	n	ENSMUSG00000035673.11	Sbno2	chr10	protein_coding	strawberry notch 2
known_NIR_1877	chr10	79908352	79911062	-	79908352	79918449	A5SS	ENSMUST00000219260.2	known	0.04	1	22	1	22	n	0.00	0	16	0	16	n	0.63	45	26	45	26	y	0.10	3	26	3	26	y	0.23	8	27	8	27	y	0.48	12	13	12	13	y	0.32	8	17	8	17	y	0.34	11	21	11	21	y	0.12	2	15	2	15	y	0.05	1	18	1	18	n	0.05	1	19	1	19	n	0.00	0	17	0	17	n	ENSMUSG00000035673.11	Sbno2	chr10	protein_coding	strawberry notch 2
known_NIR_1878	chr10	79908352	79915787	-	79908352	79911062	5pMXE	ENSMUST00000217972.2	known	0.50	1	1	1	1	n	-	-	-	-	-	-	0.10	5	45	5	45	y	0.25	1	3	1	3	n	0.11	1	8	1	8	n	0.08	1	12	1	12	n	0.11	1	8	1	8	n	0.08	1	11	1	11	n	0.00	0	2	0	2	n	0.75	3	1	3	1	n	0.75	3	1	3	1	n	1.00	3	0	3	0	n	ENSMUSG00000035673.11	Sbno2	chr10	protein_coding	strawberry notch 2
known_NIR_1879	chr10	79908352	79915787	-	79908352	79918449	A5SS	ENSMUST00000219260.2	known	0.04	1	22	1	22	n	0.00	0	16	0	16	n	0.16	5	26	5	26	y	0.04	1	26	1	26	n	0.04	1	27	1	27	n	0.07	1	13	1	13	n	0.06	1	17	1	17	n	0.05	1	21	1	21	n	0.00	0	15	0	15	n	0.14	3	18	3	18	y	0.14	3	19	3	19	y	0.15	3	17	3	17	y	ENSMUSG00000035673.11	Sbno2	chr10	protein_coding	strawberry notch 2
known_NIR_1880	chr10	79917216	79918449	-	79908352	79918449	A3SS	ENSMUST00000219260.2	known	0.00	0	22	0	22	n	0.00	0	16	0	16	n	0.00	0	26	0	26	n	0.04	1	26	1	26	n	0.10	3	27	3	27	y	0.19	3	13	3	13	y	0.00	0	17	0	17	n	0.09	2	21	2	21	y	0.06	1	15	1	15	n	0.00	0	18	0	18	n	0.05	1	19	1	19	n	0.00	0	17	0	17	n	ENSMUSG00000035673.11	Sbno2	chr10	protein_coding	strawberry notch 2
known_NIR_1881	chr10	79922266	79936906	-	79922266	79938444	A5SS	ENSMUST00000219260.2	known	0.00	0	13	0	13	n	0.33	2	4	2	4	n	0.11	3	24	3	24	y	0.31	4	9	4	9	y	0.24	7	22	7	22	y	0.10	2	19	2	19	y	0.20	3	12	3	12	y	0.21	3	11	3	11	y	0.07	1	13	1	13	n	0.19	5	22	5	22	y	0.13	2	13	2	13	y	0.00	0	8	0	8	n	ENSMUSG00000035673.11	Sbno2	chr10	protein_coding	strawberry notch 2
known_NIR_1882	chr10	79952550	79960636	+	79952741	79960636	A5SS	ENSMUST00000144883.8	known	0.06	9	154	9	154	y	0.03	6	197	6	197	y	0.07	14	178	14	178	y	0.04	10	220	10	220	y	0.06	21	331	21	331	y	0.02	2	120	2	120	y	0.04	11	258	11	258	y	0.08	9	102	9	102	y	0.04	7	160	7	160	y	0.01	4	288	4	288	y	0.05	12	217	12	217	y	0.05	12	245	12	245	y	ENSMUSG00000003068.18	Stk11	chr10	protein_coding	serine/threonine kinase 11
known_NIR_1883	chr10	79952741	79953499	+	79952741	79960636	A3SS	ENSMUST00000144883.8	known	0.00	0	154	0	154	n	0.00	0	197	0	197	n	0.02	3	178	3	178	y	0.02	5	220	5	220	y	0.00	0	331	0	331	n	0.00	0	120	0	120	n	0.00	1	258	1	258	n	0.01	1	102	1	102	n	0.00	0	160	0	160	n	0.01	2	288	2	288	y	0.01	2	217	2	217	y	0.00	0	245	0	245	n	ENSMUSG00000003068.18	Stk11	chr10	protein_coding	serine/threonine kinase 11
known_NIR_1884	chr10	79962936	79963792	+	79962936	79963738	A3SS	ENSMUST00000144883.8	known	0.01	4	266	4	266	y	0.02	7	341	7	341	y	0.01	3	243	3	243	y	0.02	4	247	4	247	y	0.02	6	316	6	316	y	0.02	2	125	2	125	y	0.02	7	374	7	374	y	0.04	6	139	6	139	y	0.01	3	257	3	257	y	0.01	4	357	4	357	y	0.00	0	314	0	314	n	0.01	4	303	4	303	y	ENSMUSG00000003068.18	Stk11	chr10	protein_coding	serine/threonine kinase 11
known_NIR_1885	chr10	79963934	79964225	+	79963934	79965739	A3SS	ENSMUST00000003152.14	known	0.03	7	264	7	264	y	0.03	9	294	9	294	y	0.01	3	238	3	238	y	0.02	5	227	5	227	y	0.02	6	362	6	362	y	0.04	7	162	7	162	y	0.01	2	316	2	316	y	0.01	2	161	2	161	y	0.01	2	229	2	229	y	0.01	3	347	3	347	y	0.01	4	336	4	336	y	0.02	5	276	5	276	y	ENSMUSG00000003068.18	Stk11	chr10	protein_coding	serine/threonine kinase 11
known_NIR_1886	chr10	79963934	79965739	+	79963934;79965534	79964225;79965739	ES	ENSMUST00000144883.8	known	0.97	264	7.5	264	7;8	y	0.98	294	5.5	294	9;2	y	0.99	238	3.0	238	3;3	y	0.97	227	6.5	227	5;8	y	0.99	362	4.0	362	6;2	y	0.97	162	5.5	162	7;4	y	0.99	316	3.0	316	2;4	y	0.98	161	3.0	161	2;4	y	0.99	229	2.0	229	2;2	y	0.98	347	6.0	347	3;9	y	0.98	336	5.5	336	4;7	y	0.98	276	4.5	276	5;4	y	ENSMUSG00000003068.18	Stk11	chr10	protein_coding	serine/threonine kinase 11
known_NIR_1887	chr10	79965534	79965739	+	79963934	79965739	A5SS	ENSMUST00000003152.14	known	0.03	8	264	8	264	y	0.01	2	294	2	294	y	0.01	3	238	3	238	y	0.03	8	227	8	227	y	0.01	2	362	2	362	y	0.02	4	162	4	162	y	0.01	4	316	4	316	y	0.02	4	161	4	161	y	0.01	2	229	2	229	y	0.03	9	347	9	347	y	0.02	7	336	7	336	y	0.01	4	276	4	276	y	ENSMUSG00000003068.18	Stk11	chr10	protein_coding	serine/threonine kinase 11
known_NIR_1888	chr10	79979819	79981257	+	79979819;79981141	79981053;79981257	ES	ENSMUST00000105367.8	known	0.00	0	1042.5	0	986;1099	n	0.01	11	1048.5	11	1015;1082	y	0.02	14	821.0	14	783;859	y	0.00	5	1032.5	5	1011;1054	y	0.01	7	1169.5	7	1058;1281	y	0.01	3	596.5	3	562;631	y	0.01	9	1364.5	9	1351;1378	y	0.00	0	586.0	0	559;613	n	0.00	4	947.5	4	922;973	y	0.00	6	1491.0	6	1408;1574	y	0.00	3	1313.0	3	1225;1401	y	0.00	4	1333.0	4	1339;1327	y	ENSMUSG00000003072.16	Atp5d	chr10	protein_coding	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit
known_NIR_1889	chr10	79985101	79985516	+	79984183	79985516	A5SS	ENSMUST00000099492.10	known	0.03	1	32	1	32	n	0.00	0	31	0	31	n	0.04	2	43	2	43	y	0.07	2	25	2	25	y	0.00	0	25	0	25	n	0.00	0	19	0	19	n	0.04	1	27	1	27	n	0.14	2	12	2	12	y	0.00	0	24	0	24	n	0.10	3	27	3	27	y	0.00	0	18	0	18	n	0.08	3	36	3	36	y	ENSMUSG00000035621.14	Midn	chr10	protein_coding	midnolin
known_NIR_1890	chr10	79987557	79989650	+	79987557	79989425	3pMXE	ENSMUST00000144526.2	known	0.69	36	16	36	16	y	0.88	30	4	30	4	y	0.65	48	26	48	26	y	0.65	31	17	31	17	y	0.73	58	21	58	21	y	0.73	19	7	19	7	y	0.66	31	16	31	16	y	0.59	22	15	22	15	y	0.74	29	10	29	10	y	0.75	54	18	54	18	y	0.86	30	5	30	5	y	0.71	41	17	41	17	y	ENSMUSG00000035621.14	Midn	chr10	protein_coding	midnolin
known_NIR_1891	chr10	79987557;79989553	79989425;79989650	+	79987557	79989650	cassetteExon	ENSMUST00000099492.10	known	0.27	13.0	36	16;10	36	y	0.20	7.5	30	4;11	30	y	0.32	22.5	48	26;19	48	y	0.37	18.0	31	17;19	31	y	0.28	22.5	58	21;24	58	y	0.30	8.0	19	7;9	19	y	0.29	12.5	31	16;9	31	y	0.34	11.5	22	15;8	22	y	0.28	11.5	29	10;13	29	y	0.23	16.0	54	18;14	54	y	0.17	6.0	30	5;7	30	y	0.28	16.0	41	17;15	41	y	ENSMUSG00000035621.14	Midn	chr10	protein_coding	midnolin
known_NIR_1892	chr10	80006598	80008248	+	80006598	80006816	3pMXE	ENSMUST00000105365.9	known	0.31	13	29	13	29	y	0.33	15	31	15	31	y	0.14	16	102	16	102	y	0.19	7	30	7	30	y	0.14	8	50	8	50	y	0.03	2	63	2	63	y	0.07	4	51	4	51	y	0.11	6	47	6	47	y	0.34	19	37	19	37	y	0.15	12	66	12	66	y	0.23	10	33	10	33	y	0.11	6	49	6	49	y	ENSMUSG00000045193.14	Cirbp	chr10	protein_coding	cold inducible RNA binding protein
known_NIR_1893	chr10	80062640	80064156	+	80062538	80064156	A5SS	ENSMUST00000020365.15	known	1.00	2	0	2	0	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.25	3	9	3	9	y	-	-	-	-	-	-	0.20	1	4	1	4	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	6	0	6	n	1.00	2	0	2	0	n	0.22	2	7	2	7	n	ENSMUSG00000020156.17	Pwwp3a	chr10	protein_coding	PWWP domain containing 3A, DNA repair factor
known_NIR_1894	chr10	80088267	80088913	+	80088267	80088908	A3SS	ENSMUST00000105364.8	known	0.02	6	287	6	287	y	0.02	7	313	7	313	y	0.00	0	221	0	221	n	0.03	8	308	8	308	y	0.01	3	374	3	374	y	0.02	3	157	3	157	y	0.01	4	429	4	429	y	0.02	3	143	3	143	y	0.01	2	279	2	279	y	0.02	9	432	9	432	y	0.02	8	396	8	396	y	0.00	0	352	0	352	n	ENSMUSG00000020153.15	Ndufs7	chr10	protein_coding	NADH:ubiquinone oxidoreductase core subunit S7
known_NIR_1895	chr10	80094932	80095011	-	80094884	80095011	A3SS	ENSMUST00000105363.8	known	0.02	15	614	15	614	y	0.02	11	559	11	559	y	0.00	0	27	0	27	n	0.04	25	635	25	635	y	0.02	9	565	9	565	y	0.00	0	28	0	28	n	0.02	15	640	15	640	y	0.04	4	91	4	91	y	0.02	14	635	14	635	y	0.04	42	958	42	958	y	0.02	14	749	14	749	y	0.03	26	932	26	932	y	ENSMUSG00000020150.14	Gamt	chr10	protein_coding	guanidinoacetate methyltransferase
known_NIR_1896	chr10	80101012	80109841	+	80097409	80109841	A5SS	ENSMUST00000156935.8	known	0.95	54	3	54	3	y	0.85	39	7	39	7	y	0.93	69	5	69	5	y	0.94	61	4	61	4	y	0.94	105	7	105	7	y	0.93	52	4	52	4	y	0.92	70	6	70	6	y	0.88	44	6	44	6	y	0.86	62	10	62	10	y	0.86	87	14	87	14	y	0.89	57	7	57	7	y	0.84	71	14	71	14	y	ENSMUSG00000069565.13	Dazap1	chr10	protein_coding	DAZ associated protein 1
known_NIR_1897	chr10	80110703	80113406	+	80110703	80113409	A3SS	ENSMUST00000156935.8	known	0.19	20	88	20	88	y	0.13	12	82	12	82	y	0.14	16	101	16	101	y	0.13	15	99	15	99	y	0.13	23	150	23	150	y	0.07	5	70	5	70	y	0.11	15	127	15	127	y	0.14	11	66	11	66	y	0.07	6	80	6	80	y	0.13	20	130	20	130	y	0.13	12	78	12	78	y	0.24	36	116	36	116	y	ENSMUSG00000069565.13	Dazap1	chr10	protein_coding	DAZ associated protein 1
known_NIR_1898	chr10	80121260	80123370	+	80121260	80123373	A3SS	ENSMUST00000105362.8	known	0.03	2	73	2	73	y	0.07	8	105	8	105	y	0.05	5	105	5	105	y	0.11	9	72	9	72	y	0.09	12	127	12	127	y	0.07	3	42	3	42	y	0.05	6	105	6	105	y	0.11	6	51	6	51	y	0.14	11	68	11	68	y	0.03	4	131	4	131	y	0.02	2	101	2	101	y	0.03	3	106	3	106	y	ENSMUSG00000069565.13	Dazap1	chr10	protein_coding	DAZ associated protein 1
known_NIR_1899	chr10	80157755	80157915	-	80157785	80157915	A3SS	ENSMUST00000137177.8	known	0.35	7	13	7	13	y	0.24	8	26	8	26	y	0.33	3	6	3	6	n	0.25	5	15	5	15	y	0.38	14	23	14	23	y	0.10	2	18	2	18	y	0.21	11	42	11	42	y	0.08	2	22	2	22	y	0.26	6	17	6	17	y	0.28	13	33	13	33	y	0.29	9	22	9	22	y	0.20	6	24	6	24	y	ENSMUSG00000020131.15	Pcsk4	chr10	protein_coding	proprotein convertase subtilisin/kexin type 4
known_NIR_1900	chr10	80169661	80170944	+	80169661	80169800	3pMXE	ENSMUST00000153167.2	known	0.00	2	1760	2	1760	y	0.00	0	1427	0	1427	n	0.00	0	1116	0	1116	n	0.00	3	2212	3	2212	y	0.00	0	2538	0	2538	n	0.00	0	823	0	823	n	0.00	3	2533	3	2533	y	0.00	3	1049	3	1049	y	0.00	0	1484	0	1484	n	0.00	3	2679	3	2679	y	0.00	0	1816	0	1816	n	0.00	0	1807	0	1807	n	ENSMUSG00000035504.17	Reep6	chr10	protein_coding	receptor accessory protein 6
known_NIR_1901	chr10	80169661	80170944	+	80169661;80169968	80169800;80170944	ES	ENSMUST00000105357.2	known	0.00	2	1713.0	2	1760;1666	y	0.00	0	1417.5	0	1427;1408	n	0.00	0	975.5	0	1116;835	n	0.00	3	2018.0	3	2212;1824	y	0.00	0	2309.0	0	2538;2080	n	0.00	0	741.0	0	823;659	n	0.00	3	2330.5	3	2533;2128	y	0.00	3	939.0	3	1049;829	y	0.00	0	1397.5	0	1484;1311	n	0.00	3	2520.5	3	2679;2362	y	0.00	0	1804.5	0	1816;1793	n	0.00	0	1681.0	0	1807;1555	n	ENSMUSG00000035504.17	Reep6	chr10	protein_coding	receptor accessory protein 6
known_NIR_1902	chr10	80169968	80170944	+	80169968;80170627	80170547;80170944	ES	ENSMUST00000105358.8	known	0.92	1666	142.5	1666	135;150	y	0.93	1408	102.0	1408	85;119	y	0.86	835	139.0	835	139;139	y	0.92	1824	152.0	1824	129;175	y	0.93	2080	149.5	2080	148;151	y	0.92	659	58.5	659	53;64	y	0.90	2128	229.5	2128	202;257	y	0.93	829	59.0	829	54;64	y	0.93	1311	103.5	1311	91;116	y	0.94	2362	159.5	2362	138;181	y	0.94	1793	121.5	1793	106;137	y	0.94	1555	94.0	1555	89;99	y	ENSMUSG00000035504.17	Reep6	chr10	protein_coding	receptor accessory protein 6
known_NIR_1903	chr10	80170627	80170944	+	80169661	80170944	A5SS	ENSMUST00000040081.7	known	0.99	150	2	150	2	y	1.00	119	0	119	0	n	1.00	139	0	139	0	n	0.98	175	3	175	3	y	1.00	151	0	151	0	n	1.00	64	0	64	0	n	0.99	257	3	257	3	y	0.96	64	3	64	3	y	1.00	116	0	116	0	n	0.98	181	3	181	3	y	1.00	137	0	137	0	n	1.00	99	0	99	0	n	ENSMUSG00000035504.17	Reep6	chr10	protein_coding	receptor accessory protein 6
known_NIR_1904	chr10	80231119	80231270	-	80231035	80231270	A3SS	ENSMUST00000092295.10	known	0.05	12	225	12	225	y	0.02	6	249	6	249	y	0.10	24	228	24	228	y	0.04	8	184	8	184	y	0.09	28	299	28	299	y	0.07	12	160	12	160	y	0.06	16	266	16	266	y	0.09	15	160	15	160	y	0.03	7	194	7	194	y	0.05	18	320	18	320	y	0.07	22	277	22	277	y	0.04	13	277	13	277	y	ENSMUSG00000035478.15	Mbd3	chr10	protein_coding	methyl-CpG binding domain protein 3
known_NIR_1905	chr10	80231429	80235052	-	80231429	80234956	A5SS	ENSMUST00000092295.10	known	0.70	105	45	105	45	y	0.73	124	47	124	47	y	0.70	138	60	138	60	y	0.72	83	33	83	33	y	0.75	146	48	146	48	y	0.79	88	23	88	23	y	0.70	144	61	144	61	y	0.70	88	37	88	37	y	0.74	90	32	90	32	y	0.74	141	50	141	50	y	0.70	116	49	116	49	y	0.74	141	49	141	49	y	ENSMUSG00000035478.15	Mbd3	chr10	protein_coding	methyl-CpG binding domain protein 3
known_NIR_1906	chr10	80240120	80242334	-	80240120	80242391	A5SS	ENSMUST00000138428.8	known	1.00	14	0	14	0	n	0.78	14	4	14	4	y	1.00	14	0	14	0	n	1.00	12	0	12	0	n	0.64	9	5	9	5	y	1.00	6	0	6	0	n	1.00	14	0	14	0	n	1.00	11	0	11	0	n	1.00	13	0	13	0	n	0.84	16	3	16	3	y	0.78	14	4	14	4	y	1.00	14	0	14	0	n	ENSMUSG00000020163.13	Uqcr11	chr10	protein_coding	ubiquinol-cytochrome c reductase, complex III subunit XI
known_NIR_1907	chr10	80240120	80242334	-	80240120	80242530	A5SS	ENSMUST00000020372.6	known	0.01	14	1447	14	1447	y	0.01	14	1693	14	1693	y	0.01	14	1290	14	1290	y	0.01	12	1422	12	1422	y	0.01	9	1659	9	1659	y	0.01	6	830	6	830	y	0.01	14	1881	14	1881	y	0.01	11	851	11	851	y	0.01	13	1409	13	1409	y	0.01	16	2109	16	2109	y	0.01	14	1932	14	1932	y	0.01	14	1796	14	1796	y	ENSMUSG00000020163.13	Uqcr11	chr10	protein_coding	ubiquinol-cytochrome c reductase, complex III subunit XI
known_NIR_1908	chr10	80240120	80242530	-	80240120	80242391	A5SS	ENSMUST00000138428.8	known	1.00	1447	0	1447	0	n	1.00	1693	4	1693	4	y	1.00	1290	0	1290	0	n	1.00	1422	0	1422	0	n	1.00	1659	5	1659	5	y	1.00	830	0	830	0	n	1.00	1881	0	1881	0	n	1.00	851	0	851	0	n	1.00	1409	0	1409	0	n	1.00	2109	3	2109	3	y	1.00	1932	4	1932	4	y	1.00	1796	0	1796	0	n	ENSMUSG00000020163.13	Uqcr11	chr10	protein_coding	ubiquinol-cytochrome c reductase, complex III subunit XI
known_NIR_1909	chr10	80246108;80246455	80246232;80249039	-	80246108;80248896	80248661;80249039	MXE	ENSMUST00000105342.8	known	0.58	14.5	10.5	29;0	9;12	n	0.55	18.0	15.0	35;1	10;20	n	0.58	18.5	13.5	37;0	14;13	n	0.46	12.0	14.0	24;0	16;12	n	0.59	21.5	15.0	43;0	16;14	n	0.52	7.5	7.0	15;0	5;9	n	0.58	14.0	10.0	28;0	10;10	n	0.53	9.0	8.0	18;0	10;6	n	0.55	10.5	8.5	21;0	12;5	n	0.66	22.5	11.5	45;0	9;14	n	0.51	12.0	11.5	24;0	8;15	n	0.60	18.0	12.0	34;2	9;15	y	ENSMUSG00000020167.15	Tcf3	chr10	protein_coding	transcription factor 3
known_NIR_1910	chr10	80246108;80248896	80248661;80249039	-	80246108;80246458	80246232;80249039	MXE	ENSMUST00000105344.8	known	0.31	10.5	23.0	9;12	29;17	y	0.35	15.0	28.0	10;20	35;21	y	0.31	13.5	30.0	14;13	37;23	y	0.38	14.0	23.0	16;12	24;22	y	0.25	15.0	46.0	16;14	43;49	y	0.32	7.0	15.0	5;9	15;15	y	0.24	10.0	32.5	10;10	28;37	y	0.31	8.0	17.5	10;6	18;17	y	0.31	8.5	19.0	12;5	21;17	y	0.21	11.5	44.0	9;14	45;43	y	0.32	11.5	25.0	8;15	24;26	y	0.29	12.0	30.0	9;15	34;26	y	ENSMUSG00000020167.15	Tcf3	chr10	protein_coding	transcription factor 3
known_NIR_1911	chr10	80246455	80249039	-	80246458	80249039	A3SS	ENSMUST00000105344.8	known	0.00	0	17	0	17	n	0.05	1	21	1	21	n	0.00	0	23	0	23	n	0.00	0	22	0	22	n	0.00	0	49	0	49	n	0.00	0	15	0	15	n	0.00	0	37	0	37	n	0.00	0	17	0	17	n	0.00	0	17	0	17	n	0.00	0	43	0	43	n	0.00	0	26	0	26	n	0.07	2	26	2	26	y	ENSMUSG00000020167.15	Tcf3	chr10	protein_coding	transcription factor 3
known_NIR_1912	chr10	80246455	80249039	-	80248896	80249039	3pMXE	ENSMUST00000129027.2	known	0.00	0	12	0	12	n	0.05	1	20	1	20	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.00	0	15	0	15	n	0.12	2	15	2	15	y	ENSMUSG00000020167.15	Tcf3	chr10	protein_coding	transcription factor 3
known_NIR_1913	chr10	80246458	80249039	-	80248896	80249039	3pMXE	ENSMUST00000129027.2	known	0.59	17	12	17	12	y	0.51	21	20	21	20	y	0.64	23	13	23	13	y	0.65	22	12	22	12	y	0.78	49	14	49	14	y	0.62	15	9	15	9	y	0.79	37	10	37	10	y	0.74	17	6	17	6	y	0.77	17	5	17	5	y	0.75	43	14	43	14	y	0.63	26	15	26	15	y	0.63	26	15	26	15	y	ENSMUSG00000020167.15	Tcf3	chr10	protein_coding	transcription factor 3
known_NIR_1914	chr10	80251354	80251687	-	80251357	80251687	A3SS	ENSMUST00000105344.8	known	0.67	14	7	14	7	y	0.52	12	11	12	11	y	0.61	11	7	11	7	y	0.53	10	9	10	9	y	0.54	27	23	27	23	y	0.80	8	2	8	2	y	0.36	8	14	8	14	y	0.50	7	7	7	7	y	0.38	10	16	10	16	y	0.56	25	20	25	20	y	0.29	7	17	7	17	y	0.49	18	19	18	19	y	ENSMUSG00000020167.15	Tcf3	chr10	protein_coding	transcription factor 3
known_NIR_1915	chr10	80254649	80255301	-	80254652	80255301	A3SS	ENSMUST00000105344.8	known	0.31	8	18	8	18	y	0.73	16	6	16	6	y	0.54	13	11	13	11	y	0.46	18	21	18	21	y	0.73	24	9	24	9	y	0.83	24	5	24	5	y	0.68	23	11	23	11	y	0.78	21	6	21	6	y	0.61	11	7	11	7	y	0.68	28	13	28	13	y	0.61	19	12	19	12	y	0.75	27	9	27	9	y	ENSMUSG00000020167.15	Tcf3	chr10	protein_coding	transcription factor 3
known_NIR_1916	chr10	80379331	80379481	-	80379245	80379481	A3SS	ENSMUST00000182682.8	known	0.08	4	49	4	49	y	0.10	3	27	3	27	y	0.04	2	51	2	51	y	0.09	3	29	3	29	y	0.07	3	41	3	41	y	0.14	5	31	5	31	y	0.04	2	44	2	44	y	0.04	1	26	1	26	n	0.12	4	28	4	28	y	0.11	4	31	4	31	y	0.07	3	42	3	42	y	0.00	0	30	0	30	n	ENSMUSG00000047417.19	Rexo1	chr10	protein_coding	REX1, RNA exonuclease 1
known_NIR_1917	chr10	80380278	80380594	-	80380254	80380594	A3SS	ENSMUST00000182682.8	known	0.00	0	47	0	47	n	0.03	1	28	1	28	n	0.12	5	35	5	35	y	0.12	5	36	5	36	y	0.12	7	51	7	51	y	0.07	2	25	2	25	y	0.06	3	45	3	45	y	0.10	3	26	3	26	y	0.03	1	37	1	37	n	0.00	0	47	0	47	n	0.03	1	37	1	37	n	0.12	5	36	5	36	y	ENSMUSG00000047417.19	Rexo1	chr10	protein_coding	REX1, RNA exonuclease 1
known_NIR_1918	chr10	80380728	80381297	-	80380707	80381297	A3SS	ENSMUST00000057910.16	known	0.00	0	33	0	33	n	0.00	0	20	0	20	n	0.00	0	39	0	39	n	0.03	1	37	1	37	n	0.00	0	60	0	60	n	0.00	0	16	0	16	n	0.00	0	33	0	33	n	0.00	0	30	0	30	n	0.00	0	23	0	23	n	0.00	0	43	0	43	n	0.10	4	37	4	37	y	0.02	1	47	1	47	n	ENSMUSG00000047417.19	Rexo1	chr10	protein_coding	REX1, RNA exonuclease 1
known_NIR_1919	chr10	80383425	80383607	-	80382299	80383607	A3SS	ENSMUST00000057910.16	known	0.00	0	22	0	22	n	0.00	0	12	0	12	n	0.12	3	23	3	23	y	0.10	2	19	2	19	y	0.15	6	34	6	34	y	0.00	0	12	0	12	n	0.00	0	17	0	17	n	0.00	0	17	0	17	n	0.08	1	11	1	11	n	0.00	0	19	0	19	n	0.00	0	18	0	18	n	0.11	3	25	3	25	y	ENSMUSG00000047417.19	Rexo1	chr10	protein_coding	REX1, RNA exonuclease 1
known_NIR_1920	chr10	80384367	80384899	-	80384367	80385167	A5SS	ENSMUST00000057910.16	known	0.09	3	30	3	30	y	0.16	4	21	4	21	y	0.34	13	25	13	25	y	0.11	3	24	3	24	y	0.17	8	40	8	40	y	0.22	4	14	4	14	y	0.17	6	30	6	30	y	0.11	3	25	3	25	y	0.16	3	16	3	16	y	0.04	1	25	1	25	n	0.32	6	13	6	13	y	0.15	7	39	7	39	y	ENSMUSG00000047417.19	Rexo1	chr10	protein_coding	REX1, RNA exonuclease 1
known_NIR_1921	chr10	80438783	80442148	+	80438783	80444637	A3SS	ENSMUST00000220669.2	known	0.03	2	72	2	72	y	0.02	1	43	1	43	n	0.02	2	104	2	104	y	0.04	3	67	3	67	y	0.01	1	84	1	84	n	0.09	5	51	5	51	y	0.00	0	82	0	82	n	0.02	1	61	1	61	n	0.08	5	55	5	55	y	0.01	1	79	1	79	n	0.04	2	51	2	51	y	0.03	2	67	2	67	y	ENSMUSG00000113949.2	Scamp4	chr10	protein_coding	secretory carrier membrane protein 4
known_NIR_1922	chr10	80438783	80444637	+	80439147	80444637	5pMXE	ENSMUST00000180350.3	known	0.91	72	7	72	7	y	0.90	43	5	43	5	y	0.92	104	9	104	9	y	0.85	67	12	67	12	y	0.94	84	5	84	5	y	0.96	51	2	51	2	y	0.93	82	6	82	6	y	0.88	61	8	61	8	y	0.95	55	3	55	3	y	0.93	79	6	79	6	y	0.91	51	5	51	5	y	0.92	67	6	67	6	y	ENSMUSG00000113949.2	Scamp4	chr10	protein_coding	secretory carrier membrane protein 4
known_NIR_1923	chr10	80442703	80444637	+	80438783	80444637	A5SS	ENSMUST00000220669.2	known	0.00	0	72	0	72	n	0.00	0	43	0	43	n	0.00	0	104	0	104	n	0.00	0	67	0	67	n	0.00	0	84	0	84	n	0.00	0	51	0	51	n	0.00	0	82	0	82	n	0.00	0	61	0	61	n	0.00	0	55	0	55	n	0.02	2	79	2	79	y	0.02	1	51	1	51	n	0.00	0	67	0	67	n	ENSMUSG00000113949.2	Scamp4	chr10	protein_coding	secretory carrier membrane protein 4
known_NIR_1924	chr10	80445258	80445475	+	80445292	80445475	A5SS	ENSMUST00000079883.12	known	0.03	2	58	2	58	y	0.05	3	58	3	58	y	0.02	2	95	2	95	y	0.01	1	71	1	71	n	0.05	5	93	5	93	y	0.03	1	37	1	37	n	0.05	3	62	3	62	y	0.01	1	72	1	72	n	0.00	0	47	0	47	n	0.02	1	55	1	55	n	0.06	4	61	4	61	y	0.04	3	64	3	64	y	ENSMUSG00000113949.2	Scamp4	chr10	protein_coding	secretory carrier membrane protein 4
known_NIR_1925	chr10	80445292	80446862	+	80445292	80445475	3pMXE	ENSMUST00000221387.2	known	0.00	0	58	0	58	n	0.00	0	58	0	58	n	0.03	3	95	3	95	y	0.00	0	71	0	71	n	0.00	0	93	0	93	n	0.00	0	37	0	37	n	0.03	2	62	2	62	y	0.00	0	72	0	72	n	0.00	0	47	0	47	n	0.00	0	55	0	55	n	0.00	0	61	0	61	n	0.00	0	64	0	64	n	ENSMUSG00000113949.2	Scamp4	chr10	protein_coding	secretory carrier membrane protein 4
known_NIR_1926	chr10	80445292	80446862	+	80445631	80446862	A5SS&ES	ENSMUST00000223256.2	known	0.00	0	115	0	115	n	0.00	0	103	0	103	n	0.02	3	181	3	181	y	0.00	0	81	0	81	n	0.00	0	113	0	113	n	0.00	0	78	0	78	n	0.01	2	133	2	133	y	0.00	0	65	0	65	n	0.00	0	73	0	73	n	0.00	0	110	0	110	n	0.00	0	86	0	86	n	0.00	0	132	0	132	n	ENSMUSG00000113949.2	Scamp4	chr10	protein_coding	secretory carrier membrane protein 4
known_NIR_1927	chr10	80445292;80445631	80445475;80446862	+	80445292	80446862	cassetteExon	ENSMUST00000220669.2	known	1.00	86.5	0	58;115	0	n	1.00	80.5	0	58;103	0	n	0.98	138.0	3	95;181	3	y	1.00	76.0	0	71;81	0	n	1.00	103.0	0	93;113	0	n	1.00	57.5	0	37;78	0	n	0.98	97.5	2	62;133	2	y	1.00	68.5	0	72;65	0	n	1.00	60.0	0	47;73	0	n	1.00	82.5	0	55;110	0	n	1.00	73.5	0	61;86	0	n	1.00	98.0	0	64;132	0	n	ENSMUSG00000113949.2	Scamp4	chr10	protein_coding	secretory carrier membrane protein 4
known_NIR_1928	chr10	80470275	80473722	+	80470475	80473722	A5SS	ENSMUST00000079773.14	known	0.00	0	185	0	185	n	0.00	0	143	0	143	n	0.00	0	273	0	273	n	0.00	0	205	0	205	n	0.00	0	285	0	285	n	0.00	0	163	0	163	n	0.00	0	265	0	265	n	0.01	2	147	2	147	y	0.00	0	168	0	168	n	0.00	0	285	0	285	n	0.00	0	169	0	169	n	0.00	0	249	0	249	n	ENSMUSG00000003345.17	Csnk1g2	chr10	protein_coding	casein kinase 1, gamma 2
known_NIR_1929	chr10	80475067	80475371	+	80475067	80475414	A3SS	ENSMUST00000079773.14	known	0.01	2	151	2	151	y	0.01	1	173	1	173	n	0.03	6	215	6	215	y	0.00	0	179	0	179	n	0.01	2	247	2	247	y	0.01	1	177	1	177	n	0.02	5	266	5	266	y	0.02	2	123	2	123	y	0.01	1	136	1	136	n	0.00	0	253	0	253	n	0.00	0	216	0	216	n	0.00	0	209	0	209	n	ENSMUSG00000003345.17	Csnk1g2	chr10	protein_coding	casein kinase 1, gamma 2
known_NIR_1930	chr10	80480647	80481174	-	80480629	80481174	A3SS	ENSMUST00000126980.8	known	0.22	11	39	11	39	y	0.20	9	36	9	36	y	0.25	7	21	7	21	y	0.08	4	47	4	47	y	0.16	12	63	12	63	y	0.00	0	4	0	4	n	0.19	11	47	11	47	y	0.18	5	23	5	23	y	0.18	6	27	6	27	y	0.21	14	53	14	53	y	0.12	5	38	5	38	y	0.19	12	50	12	50	y	ENSMUSG00000003344.15	Btbd2	chr10	protein_coding	BTB (POZ) domain containing 2
known_NIR_1931	chr10	80538793	80538883	+	80538188	80538883	A5SS	ENSMUST00000219987.2	known	0.88	28	4	28	4	y	0.85	23	4	23	4	y	0.56	5	4	5	4	n	0.87	26	4	26	4	y	0.84	26	5	26	5	y	1.00	7	0	7	0	n	0.93	42	3	42	3	y	0.76	16	5	16	5	y	0.84	31	6	31	6	y	0.89	33	4	33	4	y	0.90	35	4	35	4	y	0.91	49	5	49	5	y	ENSMUSG00000055862.8	Izumo4	chr10	protein_coding	IZUMO family member 4
known_NIR_1932	chr10	80539762	80540014	+	80539762;80539920	80539873;80540014	ES	ENSMUST00000219987.2	known	0.08	5	54.0	5	62;46	y	0.02	1	47.5	1	47;48	n	0.00	0	10.0	0	11;9	n	0.00	0	48.5	0	51;46	n	0.00	0	81.5	0	82;81	n	0.10	1	9.0	1	11;7	n	0.00	0	64.5	0	67;62	n	0.10	2	18.5	2	24;13	y	0.02	1	43.5	1	50;37	n	0.00	0	46.5	0	49;44	n	0.00	0	55.0	0	54;56	n	0.03	2	60.5	2	65;56	y	ENSMUSG00000055862.8	Izumo4	chr10	protein_coding	IZUMO family member 4
known_NIR_1933	chr10	80540269	80540455	+	80540269	80540533	A3SS	ENSMUST00000219987.2	known	0.06	2	30	2	30	y	0.09	3	30	3	30	y	0.00	0	7	0	7	n	0.09	3	31	3	31	y	0.14	7	43	7	43	y	0.00	0	4	0	4	n	0.02	1	43	1	43	n	0.00	0	13	0	13	n	0.00	0	34	0	34	n	0.11	4	33	4	33	y	0.02	1	40	1	40	n	0.08	4	49	4	49	y	ENSMUSG00000055862.8	Izumo4	chr10	protein_coding	IZUMO family member 4
known_NIR_1934	chr10	80545790;80546126	80545923;80546254	-	80545790	80546254	cassetteExon	ENSMUST00000020420.9	known	0.02	1.5	84	2;1	84	n	0.02	1.5	95	0;3	95	n	0.02	2.5	123	2;3	123	y	0.03	2.5	96	0;5	96	n	0.02	2.5	141	1;4	141	n	0.01	0.5	70	0;1	70	n	0.01	1.5	119	2;1	119	n	0.02	1.5	92	2;1	92	n	0.01	1.0	90	0;2	90	n	0.01	1.5	115	1;2	115	n	0.03	2.5	90	3;2	90	y	0.02	2.5	109	3;2	109	y	ENSMUSG00000020198.9	Ap3d1	chr10	protein_coding	adaptor-related protein complex 3, delta 1 subunit
known_NIR_1935	chr10	80627395	80627578	+	80627395	80629341	A3SS	ENSMUST00000105336.9	known	0.23	3	10	3	10	y	0.27	3	8	3	8	y	0.18	6	27	6	27	y	0.29	4	10	4	10	y	0.26	5	14	5	14	y	0.23	3	10	3	10	y	0.18	2	9	2	9	y	0.17	3	15	3	15	y	0.18	2	9	2	9	y	0.29	5	12	5	12	y	0.25	2	6	2	6	n	0.25	5	15	5	15	y	ENSMUSG00000061589.15	Dot1l	chr10	protein_coding	DOT1-like, histone H3 methyltransferase (S. cerevisiae)
known_NIR_1936	chr10	80627395	80627977	+	80627395	80629341	A3SS	ENSMUST00000105336.9	known	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.04	1	27	1	27	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.09	1	10	1	10	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.18	2	9	2	9	y	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	ENSMUSG00000061589.15	Dot1l	chr10	protein_coding	DOT1-like, histone H3 methyltransferase (S. cerevisiae)
known_NIR_1937	chr10	80628607	80629341	+	80627395	80629341	A5SS	ENSMUST00000105336.9	known	0.09	1	10	1	10	n	0.33	4	8	4	8	y	0.10	3	27	3	27	y	0.00	0	10	0	10	n	0.07	1	14	1	14	n	0.17	2	10	2	10	y	0.10	1	9	1	9	n	0.12	2	15	2	15	y	0.10	1	9	1	9	n	0.00	0	12	0	12	n	0.40	4	6	4	6	y	0.12	2	15	2	15	y	ENSMUSG00000061589.15	Dot1l	chr10	protein_coding	DOT1-like, histone H3 methyltransferase (S. cerevisiae)
known_NIR_1938	chr10	80632452	80632566	-	80632488	80632566	A3SS	ENSMUST00000036805.7	known	0.08	9	97	9	97	y	0.05	9	159	9	159	y	0.03	3	85	3	85	y	0.07	7	90	7	90	y	0.08	13	141	13	141	y	0.05	3	52	3	52	y	0.05	7	143	7	143	y	0.09	7	75	7	75	y	0.12	12	89	12	89	y	0.11	14	111	14	111	y	0.12	19	135	19	135	y	0.05	7	139	7	139	y	ENSMUSG00000035278.10	Plekhj1	chr10	protein_coding	pleckstrin homology domain containing, family J member 1
known_NIR_1939	chr10	80632656	80633357	-	80632656	80633607	A5SS	ENSMUST00000218036.2	known	0.00	0	102	0	102	n	0.01	2	146	2	146	y	0.02	2	93	2	93	y	0.01	1	110	1	110	n	0.01	1	153	1	153	n	0.02	1	54	1	54	n	0.01	2	153	2	153	y	0.05	4	84	4	84	y	0.00	0	120	0	120	n	0.00	0	123	0	123	n	0.01	2	134	2	134	y	0.02	2	127	2	127	y	ENSMUSG00000035278.10	Plekhj1	chr10	protein_coding	pleckstrin homology domain containing, family J member 1
known_NIR_1940	chr10	80632656;80633551	80633357;80633915	-	80632656;80633673	80633607;80633915	MXE	ENSMUST00000219378.2	known	0.00	0.0	52.5	0;0	102;3	n	0.01	1.0	74.0	2;0	146;2	n	0.04	2.0	49.0	2;2	93;5	y	0.01	0.5	56.0	1;0	110;2	n	0.01	0.5	77.0	1;0	153;1	n	0.02	0.5	30.5	1;0	54;7	n	0.02	2.0	78.5	2;2	153;4	y	0.04	2.0	43.5	4;0	84;3	n	0.00	0.0	60.0	0;0	120;0	n	0.00	0.0	63.5	0;0	123;4	n	0.01	1.0	70.5	2;0	134;7	n	0.02	1.0	63.5	2;0	127;0	n	ENSMUSG00000035278.10	Plekhj1	chr10	protein_coding	pleckstrin homology domain containing, family J member 1
known_NIR_1941	chr10	80632656;80633551	80633357;80633915	-	80632656;80633811	80633607;80633915	MXE	ENSMUST00000036805.7	known	0.00	0.0	80.5	0;0	102;59	n	0.01	1.0	106.0	2;0	146;66	n	0.03	2.0	78.0	2;2	93;63	y	0.01	0.5	89.5	1;0	110;69	n	0.00	0.5	115.5	1;0	153;78	n	0.01	0.5	42.5	1;0	54;31	n	0.02	2.0	119.0	2;2	153;85	y	0.03	2.0	61.5	4;0	84;39	n	0.00	0.0	92.0	0;0	120;64	n	0.00	0.0	108.0	0;0	123;93	n	0.01	1.0	102.5	2;0	134;71	n	0.01	1.0	99.0	2;0	127;71	n	ENSMUSG00000035278.10	Plekhj1	chr10	protein_coding	pleckstrin homology domain containing, family J member 1
known_NIR_1942	chr10	80633673	80633915	-	80633673;80633811	80633744;80633915	ES	ENSMUST00000036805.7	known	0.05	3	53.0	3	47;59	y	0.03	2	63.5	2	61;66	y	0.08	5	55.0	5	47;63	y	0.03	2	67.5	2	66;69	y	0.01	1	70.5	1	63;78	n	0.19	7	29.0	7	27;31	y	0.05	4	74.5	4	64;85	y	0.07	3	38.5	3	38;39	y	0.00	0	62.0	0	60;64	n	0.05	4	81.5	4	70;93	y	0.10	7	66.5	7	62;71	y	0.00	0	68.0	0	65;71	n	ENSMUSG00000035278.10	Plekhj1	chr10	protein_coding	pleckstrin homology domain containing, family J member 1
known_NIR_1943	chr10	80633673	80633915	-	80633811	80633915	A3SS	ENSMUST00000219767.2	known	0.05	3	59	3	59	y	0.03	2	66	2	66	y	0.07	5	63	5	63	y	0.03	2	69	2	69	y	0.01	1	78	1	78	n	0.18	7	31	7	31	y	0.04	4	85	4	85	y	0.07	3	39	3	39	y	0.00	0	64	0	64	n	0.04	4	93	4	93	y	0.09	7	71	7	71	y	0.00	0	71	0	71	n	ENSMUSG00000035278.10	Plekhj1	chr10	protein_coding	pleckstrin homology domain containing, family J member 1
known_NIR_1944	chr10	80633811	80633915	-	80633551	80633915	A3SS	ENSMUST00000218209.2	known	1.00	59	0	59	0	n	1.00	66	0	66	0	n	0.97	63	2	63	2	y	1.00	69	0	69	0	n	1.00	78	0	78	0	n	1.00	31	0	31	0	n	0.98	85	2	85	2	y	1.00	39	0	39	0	n	1.00	64	0	64	0	n	1.00	93	0	93	0	n	1.00	71	0	71	0	n	1.00	71	0	71	0	n	ENSMUSG00000035278.10	Plekhj1	chr10	protein_coding	pleckstrin homology domain containing, family J member 1
known_NIR_1945	chr10	80634936	80637030	+	80634639	80637030	A5SS	ENSMUST00000148665.8	known	0.01	1	80	1	80	n	0.02	1	47	1	47	n	0.00	0	65	0	65	n	0.02	1	53	1	53	n	0.08	5	60	5	60	y	0.00	0	29	0	29	n	0.07	4	53	4	53	y	0.00	0	41	0	41	n	0.07	3	38	3	38	y	0.03	2	73	2	73	y	0.00	0	46	0	46	n	0.08	4	47	4	47	y	ENSMUSG00000020211.16	Sf3a2	chr10	protein_coding	splicing factor 3a, subunit 2
known_NIR_1946	chr10	80639557	80639635	+	80639557	80639654	A3SS	ENSMUST00000148665.8	known	0.03	2	65	2	65	y	0.05	2	38	2	38	y	0.04	2	43	2	43	y	0.07	3	41	3	41	y	0.02	1	57	1	57	n	0.00	0	29	0	29	n	0.04	3	78	3	78	y	0.03	1	37	1	37	n	0.03	1	30	1	30	n	0.00	0	58	0	58	n	0.00	0	34	0	34	n	0.02	1	53	1	53	n	ENSMUSG00000020211.16	Sf3a2	chr10	protein_coding	splicing factor 3a, subunit 2
known_NIR_1947	chr10	80647938	80649297	-	80647938;80648251	80648129;80649297	ES	ENSMUST00000181039.8	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.22	4	14.5	4	16;13	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020216.14	Jsrp1	chr10	protein_coding	junctional sarcoplasmic reticulum protein 1
known_NIR_1948	chr10	80662739	80664077	+	80662739	80664071	A3SS	ENSMUST00000060987.15	known	0.01	23	1523	23	1523	y	0.01	21	1555	21	1555	y	0.02	19	1237	19	1237	y	0.01	17	1460	17	1460	y	0.02	37	2024	37	2024	y	0.01	11	935	11	935	y	0.02	40	2104	40	2104	y	0.01	12	899	12	899	y	0.01	16	1305	16	1305	y	0.02	38	2224	38	2224	y	0.01	25	1760	25	1760	y	0.01	27	2026	27	2026	y	ENSMUSG00000035242.16	Oaz1	chr10	protein_coding	ornithine decarboxylase antizyme 1
known_NIR_1949	chr10	80663571	80664071	+	80662739	80664071	A5SS	ENSMUST00000060987.15	known	0.00	0	1523	0	1523	n	0.00	0	1555	0	1555	n	0.00	0	1237	0	1237	n	0.00	0	1460	0	1460	n	0.00	0	2024	0	2024	n	0.00	0	935	0	935	n	0.00	2	2104	2	2104	y	0.00	0	899	0	899	n	0.00	0	1305	0	1305	n	0.00	0	2224	0	2224	n	0.00	0	1760	0	1760	n	0.00	2	2026	2	2026	y	ENSMUSG00000035242.16	Oaz1	chr10	protein_coding	ornithine decarboxylase antizyme 1
known_NIR_1950	chr10	80664467	80664553	+	80664467	80664545	A3SS	ENSMUST00000060987.15	known	0.00	0	1707	0	1707	n	0.01	13	1720	13	1720	y	0.01	11	1307	11	1307	y	0.01	12	1513	12	1513	y	0.01	24	2124	24	2124	y	0.00	3	898	3	898	y	0.01	16	2232	16	2232	y	0.00	0	1027	0	1027	n	0.01	17	1495	17	1495	y	0.01	19	2487	19	2487	y	0.01	17	2031	17	2031	y	0.01	13	2377	13	2377	y	ENSMUSG00000035242.16	Oaz1	chr10	protein_coding	ornithine decarboxylase antizyme 1
known_NIR_1951	chr10	80664630	80664727	+	80664630	80664705	A3SS	ENSMUST00000060987.15	known	0.04	73	1907	73	1907	y	0.04	79	2104	79	2104	y	0.03	52	1556	52	1556	y	0.03	62	1721	62	1721	y	0.03	86	2412	86	2412	y	0.04	41	947	41	947	y	0.04	103	2631	103	2631	y	0.03	38	1105	38	1105	y	0.04	62	1667	62	1667	y	0.04	108	2833	108	2833	y	0.04	90	2284	90	2284	y	0.04	97	2668	97	2668	y	ENSMUSG00000035242.16	Oaz1	chr10	protein_coding	ornithine decarboxylase antizyme 1
known_NIR_1952	chr10	80689659	80690452	-	80689663	80690452	A3SS	ENSMUST00000220225.2	known	0.00	0	171	0	171	n	0.00	0	154	0	154	n	0.01	1	101	1	101	n	0.00	0	105	0	105	n	0.01	2	169	2	169	y	0.00	0	66	0	66	n	0.00	0	169	0	169	n	0.00	0	78	0	78	n	0.00	0	149	0	149	n	0.00	0	168	0	168	n	0.00	0	167	0	167	n	0.00	0	154	0	154	n	ENSMUSG00000035215.10	Lsm7	chr10	protein_coding	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated
known_NIR_1953	chr10	80690542	80690774	-	80690542	80691015	A5SS	ENSMUST00000220225.2	known	0.00	0	37	0	37	n	0.00	0	41	0	41	n	0.00	0	27	0	27	n	0.12	4	29	4	29	y	0.00	0	44	0	44	n	0.09	2	21	2	21	y	0.03	2	66	2	66	y	0.00	0	21	0	21	n	0.06	2	34	2	34	y	0.02	1	49	1	49	n	0.00	0	43	0	43	n	0.10	5	43	5	43	y	ENSMUSG00000035215.10	Lsm7	chr10	protein_coding	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated
known_NIR_1954	chr10	80698928	80699011	+	80698928	80699014	A3SS	ENSMUST00000035597.10	known	0.35	8	15	8	15	y	0.42	10	14	10	14	y	0.22	2	7	2	7	n	0.36	9	16	9	16	y	0.28	10	26	10	26	y	0.67	8	4	8	4	y	0.13	3	20	3	20	y	0.39	7	11	7	11	y	0.33	5	10	5	10	y	0.33	8	16	8	16	y	0.25	4	12	4	12	y	0.39	7	11	7	11	y	ENSMUSG00000035206.11	Sppl2b	chr10	protein_coding	signal peptide peptidase like 2B
known_NIR_1955	chr10	80699385	80699906	+	80699385	80699872	A3SS	ENSMUST00000035597.10	known	0.21	6	23	6	23	y	0.23	6	20	6	20	y	0.08	2	24	2	24	y	0.07	2	28	2	28	y	0.05	2	36	2	36	y	0.06	1	16	1	16	n	0.04	1	26	1	26	n	0.06	1	17	1	17	n	0.05	1	19	1	19	n	0.09	3	31	3	31	y	0.14	2	12	2	12	y	0.09	3	30	3	30	y	ENSMUSG00000035206.11	Sppl2b	chr10	protein_coding	signal peptide peptidase like 2B
known_NIR_1956	chr10	80699385	80700955	+	80699385;80699988	80699872;80700955	ES	ENSMUST00000035597.10	known	0.00	0	23.5	0	23;24	n	0.00	0	22.5	0	20;25	n	0.00	0	26.5	0	24;29	n	0.00	0	31.0	0	28;34	n	0.07	3	37.0	3	36;38	y	0.00	0	16.5	0	16;17	n	0.04	1	24.0	1	26;22	n	0.00	0	21.0	0	17;25	n	0.04	1	22.5	1	19;26	n	0.00	0	37.5	0	31;44	n	0.06	1	15.5	1	12;19	n	0.00	0	29.0	0	30;28	n	ENSMUSG00000035206.11	Sppl2b	chr10	protein_coding	signal peptide peptidase like 2B
known_NIR_1957	chr10	80699385;80699988	80699906;80700955	+	80699385	80700955	cassetteExon	ENSMUST00000219614.2	known	1.00	15.0	0	6;24	0	n	1.00	15.5	0	6;25	0	n	1.00	15.5	0	2;29	0	n	1.00	18.0	0	2;34	0	n	0.87	20.0	3	2;38	3	y	1.00	9.0	0	1;17	0	n	0.92	11.5	1	1;22	1	n	1.00	13.0	0	1;25	0	n	0.93	13.5	1	1;26	1	n	1.00	23.5	0	3;44	0	n	0.91	10.5	1	2;19	1	n	1.00	15.5	0	3;28	0	n	ENSMUSG00000035206.11	Sppl2b	chr10	protein_coding	signal peptide peptidase like 2B
known_NIR_1958	chr10	80736166	80736316	-	80736093	80736316	A3SS	ENSMUST00000020440.7	known	0.00	0	833	0	833	n	0.00	3	883	3	883	y	0.00	3	716	3	716	y	0.00	0	717	0	717	n	0.00	1	932	1	932	n	0.01	3	455	3	455	y	0.00	3	1062	3	1062	y	0.00	0	452	0	452	n	0.00	1	666	1	666	n	0.00	1	1034	1	1034	n	0.00	0	979	0	979	n	0.00	3	811	3	811	y	ENSMUSG00000020219.8	Timm13	chr10	protein_coding	translocase of inner mitochondrial membrane 13
known_NIR_1959	chr10	80736384	80736503	-	80736384	80736458	A5SS	ENSMUST00000020440.7	known	0.01	7	644	7	644	y	0.01	4	683	4	683	y	0.01	3	578	3	578	y	0.01	5	650	5	650	y	0.01	7	847	7	847	y	0.00	0	410	0	410	n	0.00	2	800	2	800	y	0.01	4	397	4	397	y	0.00	0	533	0	533	n	0.00	0	878	0	878	n	0.00	1	744	1	744	n	0.00	1	725	1	725	n	ENSMUSG00000020219.8	Timm13	chr10	protein_coding	translocase of inner mitochondrial membrane 13
known_NIR_1960	chr10	80870843	80873038	-	80870839	80873038	A3SS	ENSMUST00000117276.11	known	0.17	3	15	3	15	y	0.44	8	10	8	10	y	0.48	11	12	11	12	y	0.28	5	13	5	13	y	0.35	9	17	9	17	y	0.46	11	13	11	13	y	0.29	6	15	6	15	y	0.33	5	10	5	10	y	0.17	2	10	2	10	y	0.25	4	12	4	12	y	0.43	9	12	9	12	y	0.47	9	10	9	10	y	ENSMUSG00000046822.15	Slc39a3	chr10	protein_coding	solute carrier family 39 (zinc transporter), member 3
known_NIR_1961	chr10	80886917	80887057	-	80886920	80887057	A3SS	ENSMUST00000005067.6	known	0.75	78	26	78	26	y	0.64	61	34	61	34	y	0.72	100	39	100	39	y	0.78	101	29	101	29	y	0.73	117	44	117	44	y	0.65	53	29	53	29	y	0.75	98	32	98	32	y	0.77	53	16	53	16	y	0.74	72	25	72	25	y	0.79	128	34	128	34	y	0.71	83	34	83	34	y	0.81	122	28	122	28	y	ENSMUSG00000004937.7	Sgta	chr10	protein_coding	small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha
known_NIR_1962	chr10	80888085	80895752	-	80888085	80895962	A5SS	ENSMUST00000005067.6	known	0.03	2	65	2	65	y	0.10	6	53	6	53	y	0.04	4	86	4	86	y	0.07	8	104	8	104	y	0.02	2	123	2	123	y	0.00	0	52	0	52	n	0.04	4	89	4	89	y	0.02	1	49	1	49	n	0.07	4	57	4	57	y	0.03	3	91	3	91	y	0.02	2	94	2	94	y	0.05	4	70	4	70	y	ENSMUSG00000004937.7	Sgta	chr10	protein_coding	small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha
known_NIR_1963	chr10	80942207	80944582	+	80942072	80944582	A5SS	ENSMUST00000143517.8	known	0.00	0	390	0	390	n	0.00	0	335	0	335	n	0.00	0	562	0	562	n	0.00	0	438	0	438	n	0.00	1	562	1	562	n	0.00	0	376	0	376	n	0.00	0	462	0	462	n	0.00	0	296	0	296	n	0.00	1	332	1	332	n	0.00	2	556	2	556	y	0.00	0	416	0	416	n	0.00	0	457	0	457	n	ENSMUSG00000035027.19	Map2k2	chr10	protein_coding	mitogen-activated protein kinase kinase 2
known_NIR_1964	chr10	80954063	80954811	+	80954063	80954943	A3SS	ENSMUST00000143517.8	known	0.00	2	427	2	427	y	0.00	0	464	0	464	n	0.01	5	681	5	681	y	0.00	0	448	0	448	n	0.00	1	629	1	629	n	0.00	0	417	0	417	n	0.00	3	608	3	608	y	0.00	0	347	0	347	n	0.00	1	370	1	370	n	0.00	2	657	2	657	y	0.00	2	542	2	542	y	0.00	2	562	2	562	y	ENSMUSG00000035027.19	Map2k2	chr10	protein_coding	mitogen-activated protein kinase kinase 2
known_NIR_1965	chr10	80955537	80956880	+	80955537	80956877	A3SS	ENSMUST00000143517.8	known	0.67	216	107	216	107	y	0.67	292	145	292	145	y	0.58	298	218	298	218	y	0.67	231	115	231	115	y	0.67	324	161	324	161	y	0.62	206	125	206	125	y	0.63	325	189	325	189	y	0.64	202	116	202	116	y	0.70	203	89	203	89	y	0.62	321	197	321	197	y	0.68	307	142	307	142	y	0.64	305	170	305	170	y	ENSMUSG00000035027.19	Map2k2	chr10	protein_coding	mitogen-activated protein kinase kinase 2
known_NIR_1966	chr10	80972493	80979796	+	80971425	80979796	A5SS	ENSMUST00000125261.2	known	1.00	6	0	6	0	n	0.83	5	1	5	1	n	1.00	9	0	9	0	n	0.67	4	2	4	2	n	0.70	7	3	7	3	y	1.00	1	0	1	0	n	1.00	11	0	11	0	n	1.00	7	0	7	0	n	1.00	9	0	9	0	n	0.80	16	4	16	4	y	1.00	3	0	3	0	n	0.75	6	2	6	2	n	ENSMUSG00000035011.16	Zbtb7a	chr10	protein_coding	zinc finger and BTB domain containing 7a
known_NIR_1967	chr10	80972493	80979796	+	80972533	80979796	A5SS	ENSMUST00000048128.15	known	0.55	6	5	6	5	y	0.56	5	4	5	4	n	0.53	9	8	9	8	y	0.44	4	5	4	5	n	0.47	7	8	7	8	y	1.00	1	0	1	0	n	0.48	11	12	11	12	y	0.58	7	5	7	5	y	0.69	9	4	9	4	y	0.80	16	4	16	4	y	0.50	3	3	3	3	n	0.67	6	3	6	3	n	ENSMUSG00000035011.16	Zbtb7a	chr10	protein_coding	zinc finger and BTB domain containing 7a
known_NIR_1968	chr10	80972533	80979796	+	80971425	80979796	A5SS	ENSMUST00000125261.2	known	1.00	5	0	5	0	n	0.80	4	1	4	1	n	1.00	8	0	8	0	n	0.71	5	2	5	2	n	0.73	8	3	8	3	y	-	-	-	-	-	-	1.00	12	0	12	0	n	1.00	5	0	5	0	n	1.00	4	0	4	0	n	0.50	4	4	4	4	n	1.00	3	0	3	0	n	0.60	3	2	3	2	n	ENSMUSG00000035011.16	Zbtb7a	chr10	protein_coding	zinc finger and BTB domain containing 7a
known_NIR_1969	chr10	80973904	80979796	+	80971425	80979796	A5SS	ENSMUST00000125261.2	known	1.00	6	0	6	0	n	0.90	9	1	9	1	n	1.00	14	0	14	0	n	0.80	8	2	8	2	y	0.86	19	3	19	3	y	1.00	12	0	12	0	n	1.00	15	0	15	0	n	1.00	11	0	11	0	n	1.00	7	0	7	0	n	0.71	10	4	10	4	y	1.00	5	0	5	0	n	0.78	7	2	7	2	n	ENSMUSG00000035011.16	Zbtb7a	chr10	protein_coding	zinc finger and BTB domain containing 7a
known_NIR_1970	chr10	80973904	80979796	+	80972493	80979796	A5SS	ENSMUST00000119606.8	known	0.50	6	6	6	6	y	0.64	9	5	9	5	y	0.61	14	9	14	9	y	0.67	8	4	8	4	y	0.73	19	7	19	7	y	0.92	12	1	12	1	n	0.58	15	11	15	11	y	0.61	11	7	11	7	y	0.44	7	9	7	9	y	0.38	10	16	10	16	y	0.62	5	3	5	3	n	0.54	7	6	7	6	y	ENSMUSG00000035011.16	Zbtb7a	chr10	protein_coding	zinc finger and BTB domain containing 7a
known_NIR_1971	chr10	80973904	80979796	+	80972533	80979796	A5SS	ENSMUST00000048128.15	known	0.55	6	5	6	5	y	0.69	9	4	9	4	y	0.64	14	8	14	8	y	0.62	8	5	8	5	y	0.70	19	8	19	8	y	1.00	12	0	12	0	n	0.56	15	12	15	12	y	0.69	11	5	11	5	y	0.64	7	4	7	4	y	0.71	10	4	10	4	y	0.62	5	3	5	3	n	0.70	7	3	7	3	y	ENSMUSG00000035011.16	Zbtb7a	chr10	protein_coding	zinc finger and BTB domain containing 7a
known_NIR_1972	chr10	81019134	81019810	+	81018930	81019810	A5SS	ENSMUST00000178422.9	known	0.13	7	47	7	47	y	0.16	9	48	9	48	y	0.23	15	51	15	51	y	0.09	6	59	6	59	y	0.10	10	89	10	89	y	0.07	3	39	3	39	y	0.08	5	54	5	54	y	0.21	10	37	10	37	y	0.11	5	41	5	41	y	0.11	8	68	8	68	y	0.05	4	69	4	69	y	0.12	9	68	9	68	y	ENSMUSG00000034974.14	Dapk3	chr10	protein_coding	death-associated protein kinase 3
known_NIR_1973	chr10	81019253	81019810	+	81018930	81019810	A5SS	ENSMUST00000178422.9	known	0.27	17	47	17	47	y	0.20	12	48	12	48	y	0.14	8	51	8	51	y	0.12	8	59	8	59	y	0.09	9	89	9	89	y	0.20	10	39	10	39	y	0.18	12	54	12	54	y	0.29	15	37	15	37	y	0.15	7	41	7	41	y	0.15	12	68	12	68	y	0.04	3	69	3	69	y	0.09	7	68	7	68	y	ENSMUSG00000034974.14	Dapk3	chr10	protein_coding	death-associated protein kinase 3
known_NIR_1974	chr10	81019253	81019810	+	81019134	81019810	A5SS	ENSMUST00000219133.2	known	0.71	17	7	17	7	y	0.57	12	9	12	9	y	0.35	8	15	8	15	y	0.57	8	6	8	6	y	0.47	9	10	9	10	y	0.77	10	3	10	3	y	0.71	12	5	12	5	y	0.60	15	10	15	10	y	0.58	7	5	7	5	y	0.60	12	8	12	8	y	0.43	3	4	3	4	n	0.44	7	9	7	9	y	ENSMUSG00000034974.14	Dapk3	chr10	protein_coding	death-associated protein kinase 3
known_NIR_1975	chr10	81026480	81027593	+	81026480	81026876	3pMXE	ENSMUST00000218157.2	known	0.00	0	108	0	108	n	0.01	1	107	1	107	n	0.00	0	115	0	115	n	0.00	0	110	0	110	n	0.01	2	142	2	142	y	0.02	1	65	1	65	n	0.01	1	121	1	121	n	0.00	0	65	0	65	n	0.00	0	78	0	78	n	0.02	2	124	2	124	y	0.01	1	129	1	129	n	0.00	0	109	0	109	n	ENSMUSG00000034974.14	Dapk3	chr10	protein_coding	death-associated protein kinase 3
known_NIR_1976	chr10	81026480	81027593	+	81026480;81026902	81026876;81027593	ES	ENSMUST00000178422.9	known	0.00	0	103.0	0	108;98	n	0.01	1	102.0	1	107;97	n	0.00	0	105.0	0	115;95	n	0.00	0	110.5	0	110;111	n	0.01	2	132.0	2	142;122	y	0.02	1	62.5	1	65;60	n	0.01	1	112.0	1	121;103	n	0.00	0	65.5	0	65;66	n	0.00	0	72.5	0	78;67	n	0.02	2	115.0	2	124;106	y	0.01	1	125.5	1	129;122	n	0.00	0	100.0	0	109;91	n	ENSMUSG00000034974.14	Dapk3	chr10	protein_coding	death-associated protein kinase 3
known_NIR_1977	chr10	81104153	81104644	+	81104153	81104613	A3SS	ENSMUST00000220297.2	known	0.00	0	91	0	91	n	0.01	1	88	1	88	n	0.00	0	123	0	123	n	0.03	3	105	3	105	y	0.05	6	115	6	115	y	0.04	3	69	3	69	y	0.03	4	111	4	111	y	0.06	4	62	4	62	y	0.07	5	69	5	69	y	0.02	2	103	2	103	y	0.00	0	66	0	66	n	0.05	4	74	4	74	y	ENSMUSG00000004931.12	Apba3	chr10	protein_coding	amyloid beta (A4) precursor protein-binding, family A, member 3
known_NIR_1978	chr10	81104153	81104644	+	81104153	81104692	A3SS	ENSMUST00000219304.2	known	0.00	0	10	0	10	n	0.33	1	2	1	2	n	0.00	0	9	0	9	n	0.21	3	11	3	11	y	0.29	6	15	6	15	y	0.43	3	4	3	4	n	0.33	4	8	4	8	y	0.67	4	2	4	2	n	0.71	5	2	5	2	n	0.25	2	6	2	6	n	0.00	0	5	0	5	n	0.33	4	8	4	8	y	ENSMUSG00000004931.12	Apba3	chr10	protein_coding	amyloid beta (A4) precursor protein-binding, family A, member 3
known_NIR_1979	chr10	81104153	81104692	+	81104153	81104613	A3SS	ENSMUST00000220297.2	known	0.10	10	91	10	91	y	0.02	2	88	2	88	y	0.07	9	123	9	123	y	0.09	11	105	11	105	y	0.12	15	115	15	115	y	0.05	4	69	4	69	y	0.07	8	111	8	111	y	0.03	2	62	2	62	y	0.03	2	69	2	69	y	0.06	6	103	6	103	y	0.07	5	66	5	66	y	0.10	8	74	8	74	y	ENSMUSG00000004931.12	Apba3	chr10	protein_coding	amyloid beta (A4) precursor protein-binding, family A, member 3
known_NIR_1980	chr10	81107116	81107226	+	81107116	81107199	A3SS	ENSMUST00000220297.2	known	0.06	7	103	7	103	y	0.04	5	109	5	109	y	0.04	5	119	5	119	y	0.16	16	87	16	87	y	0.07	10	133	10	133	y	0.07	5	70	5	70	y	0.07	9	127	9	127	y	0.10	6	57	6	57	y	0.11	8	67	8	67	y	0.09	9	93	9	93	y	0.03	3	84	3	84	y	0.05	5	99	5	99	y	ENSMUSG00000004931.12	Apba3	chr10	protein_coding	amyloid beta (A4) precursor protein-binding, family A, member 3
known_NIR_1981	chr10	81107116	81107226	+	81107116	81107245	A3SS	ENSMUST00000217688.2	known	0.41	7	10	7	10	y	0.62	5	3	5	3	n	0.36	5	9	5	9	y	0.80	16	4	16	4	y	0.50	10	10	10	10	y	1.00	5	0	5	0	n	0.75	9	3	9	3	y	1.00	6	0	6	0	n	0.62	8	5	8	5	y	0.47	9	10	9	10	y	1.00	3	0	3	0	n	1.00	5	0	5	0	n	ENSMUSG00000004931.12	Apba3	chr10	protein_coding	amyloid beta (A4) precursor protein-binding, family A, member 3
known_NIR_1982	chr10	81107116	81107245	+	81107116	81107199	A3SS	ENSMUST00000220297.2	known	0.09	10	103	10	103	y	0.03	3	109	3	109	y	0.07	9	119	9	119	y	0.04	4	87	4	87	y	0.07	10	133	10	133	y	0.00	0	70	0	70	n	0.02	3	127	3	127	y	0.00	0	57	0	57	n	0.07	5	67	5	67	y	0.10	10	93	10	93	y	0.00	0	84	0	84	n	0.00	0	99	0	99	n	ENSMUSG00000004931.12	Apba3	chr10	protein_coding	amyloid beta (A4) precursor protein-binding, family A, member 3
known_NIR_1983	chr10	81140549	81140973	+	81140549	81141020	A3SS	ENSMUST00000163075.8	known	0.00	0	22	0	22	n	0.14	3	18	3	18	y	0.00	0	15	0	15	n	0.06	1	17	1	17	n	0.00	0	26	0	26	n	0.00	0	8	0	8	n	0.05	1	21	1	21	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	20	0	20	n	0.00	0	15	0	15	n	0.00	0	13	0	13	n	ENSMUSG00000034902.18	Pip5k1c	chr10	protein_coding	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma
known_NIR_1984	chr10	81150952	81151713	+	81150952	81153600	A3SS	ENSMUST00000163075.8	known	0.06	2	29	2	29	y	0.00	0	21	0	21	n	0.00	0	13	0	13	n	0.00	0	31	0	31	n	0.00	0	32	0	32	n	0.08	1	12	1	12	n	0.00	0	23	0	23	n	0.00	0	10	0	10	n	0.07	1	13	1	13	n	0.00	0	35	0	35	n	0.00	0	25	0	25	n	0.04	1	27	1	27	n	ENSMUSG00000034902.18	Pip5k1c	chr10	protein_coding	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma
known_NIR_1985	chr10	81150952	81153600	+	81153237	81153600	5pMXE	ENSMUST00000159636.2	known	0.85	29	5	29	5	y	0.81	21	5	21	5	y	0.59	13	9	13	9	y	0.82	31	7	31	7	y	0.82	32	7	32	7	y	0.80	12	3	12	3	y	0.85	23	4	23	4	y	0.83	10	2	10	2	y	0.87	13	2	13	2	y	0.85	35	6	35	6	y	0.83	25	5	25	5	y	0.93	27	2	27	2	y	ENSMUSG00000034902.18	Pip5k1c	chr10	protein_coding	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma
known_NIR_1986	chr10	81150952;81153237	81153160;81153600	+	81150952	81153600	cassetteExon	ENSMUST00000163075.8	known	0.16	5.5	29	6;5	29	y	0.12	3.0	21	1;5	21	n	0.30	5.5	13	2;9	13	y	0.13	4.5	31	2;7	31	y	0.15	5.5	32	4;7	32	y	0.17	2.5	12	2;3	12	y	0.16	4.5	23	5;4	23	y	0.23	3.0	10	4;2	10	y	0.10	1.5	13	1;2	13	n	0.14	5.5	35	5;6	35	y	0.12	3.5	25	2;5	25	y	0.08	2.5	27	3;2	27	y	ENSMUSG00000034902.18	Pip5k1c	chr10	protein_coding	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma
known_NIR_1987	chr10	81183396	81183820	-	81183342	81183820	A3SS	ENSMUST00000105323.8	known	0.00	0	71	0	71	n	0.03	2	69	2	69	y	0.00	0	91	0	91	n	0.02	1	64	1	64	n	0.01	1	92	1	92	n	0.00	0	64	0	64	n	0.03	3	98	3	98	y	0.00	0	56	0	56	n	0.04	3	68	3	68	y	0.00	0	100	0	100	n	0.01	1	77	1	77	n	0.00	0	85	0	85	n	ENSMUSG00000020232.18	Hmg20b	chr10	protein_coding	high mobility group 20B
known_NIR_1988	chr10	81185322	81185846	-	81185322	81185968	A5SS	ENSMUST00000105323.8	known	0.00	0	76	0	76	n	0.02	1	61	1	61	n	0.00	0	90	0	90	n	0.00	0	82	0	82	n	0.02	2	129	2	129	y	0.00	0	59	0	59	n	0.00	0	103	0	103	n	0.00	0	55	0	55	n	0.00	0	62	0	62	n	0.00	0	117	0	117	n	0.00	0	62	0	62	n	0.00	0	65	0	65	n	ENSMUSG00000020232.18	Hmg20b	chr10	protein_coding	high mobility group 20B
known_NIR_1989	chr10	81185436	81185968	-	81185322	81185968	A3SS	ENSMUST00000105323.8	known	0.00	0	76	0	76	n	0.00	0	61	0	61	n	0.02	2	90	2	90	y	0.00	0	82	0	82	n	0.00	0	129	0	129	n	0.00	0	59	0	59	n	0.00	0	103	0	103	n	0.00	0	55	0	55	n	0.02	1	62	1	62	n	0.01	1	117	1	117	n	0.00	0	62	0	62	n	0.00	0	65	0	65	n	ENSMUSG00000020232.18	Hmg20b	chr10	protein_coding	high mobility group 20B
known_NIR_1990	chr10	81186023	81186107	-	81186023	81186241	A5SS	ENSMUST00000105323.8	known	0.55	21	17	21	17	y	0.33	9	18	9	18	y	0.71	24	10	24	10	y	0.54	15	13	15	13	y	0.62	28	17	28	17	y	0.57	12	9	12	9	y	0.53	20	18	20	18	y	0.59	10	7	10	7	y	0.62	15	9	15	9	y	0.48	23	25	23	25	y	0.66	19	10	19	10	y	0.57	12	9	12	9	y	ENSMUSG00000020232.18	Hmg20b	chr10	protein_coding	high mobility group 20B
known_NIR_1991	chr10	81204430	81204908	-	81204590	81204908	A3SS	ENSMUST00000140901.8	known	0.00	0	37	0	37	n	0.00	0	22	0	22	n	0.00	0	32	0	32	n	0.00	0	24	0	24	n	0.06	2	32	2	32	y	0.00	0	19	0	19	n	0.00	0	26	0	26	n	0.00	0	14	0	14	n	0.00	0	24	0	24	n	0.00	0	45	0	45	n	0.00	0	23	0	23	n	0.00	0	19	0	19	n	ENSMUSG00000020235.17	Fzr1	chr10	protein_coding	fizzy and cell division cycle 20 related 1
known_NIR_1992	chr10	81220460	81221553	+	81220412	81221553	A5SS	ENSMUST00000072751.13	known	0.06	5	77	5	77	y	0.05	3	63	3	63	y	0.09	9	89	9	89	y	0.03	2	66	2	66	y	0.06	7	102	7	102	y	0.15	7	40	7	40	y	0.10	11	97	11	97	y	0.03	2	56	2	56	y	0.02	2	82	2	82	y	0.14	15	89	15	89	y	0.04	3	82	3	82	y	0.09	8	84	8	84	y	ENSMUSG00000078440.11	Dohh	chr10	protein_coding	deoxyhypusine hydroxylase/monooxygenase
known_NIR_1993	chr10	81223314	81226193	+	81223314	81223541	3pMXE	ENSMUST00000072751.13	known	0.00	0	80	0	80	n	0.00	0	67	0	67	n	0.00	0	79	0	79	n	0.00	0	65	0	65	n	0.00	0	84	0	84	n	0.00	0	39	0	39	n	0.02	2	91	2	91	y	0.00	0	43	0	43	n	0.00	0	55	0	55	n	0.00	0	114	0	114	n	0.00	0	75	0	75	n	0.00	0	88	0	88	n	ENSMUSG00000078440.11	Dohh	chr10	protein_coding	deoxyhypusine hydroxylase/monooxygenase
known_NIR_1994	chr10	81236905;81239262	81239186;81240658	-	81236905	81240658	cassetteExon	ENSMUST00000105321.10	known	0.80	70.0	17	74;66	17	y	0.84	52.5	10	51;54	10	y	0.83	81.0	17	84;78	17	y	0.88	146.0	20	120;172	20	y	0.85	103.0	18	104;102	18	y	0.86	57.5	9	50;65	9	y	0.83	81.5	17	81;82	17	y	0.73	58.0	21	48;68	21	y	0.85	74.0	13	53;95	13	y	0.77	116.0	34	114;118	34	y	0.79	84.0	23	75;93	23	y	0.84	90.5	17	88;93	17	y	ENSMUSG00000055053.19	Nfic	chr10	protein_coding	nuclear factor I/C
known_NIR_1995	chr10	81240842	81243389	-	81240842;81242048	81241923;81243389	ES	ENSMUST00000105321.10	known	0.00	0	68.5	0	64;73	n	0.02	1	54.0	1	60;48	n	0.03	2	73.5	2	76;71	y	0.04	5	126.0	5	127;125	y	0.03	3	87.5	3	83;92	y	0.10	5	46.0	5	51;41	y	0.01	1	95.0	1	98;92	n	0.03	2	56.5	2	62;51	y	0.06	5	77.5	5	72;83	y	0.04	5	121.0	5	130;112	y	0.04	3	81.5	3	76;87	y	0.01	1	98.0	1	101;95	n	ENSMUSG00000055053.19	Nfic	chr10	protein_coding	nuclear factor I/C
known_NIR_1996	chr10	81256632	81266620	-	81256632	81262910	5pMXE	ENSMUST00000105321.10	known	0.13	7	47	7	47	y	0.22	5	18	5	18	y	0.08	4	46	4	46	y	0.13	14	96	14	96	y	0.14	10	59	10	59	y	0.12	4	28	4	28	y	0.16	13	69	13	69	y	0.08	3	36	3	36	y	0.00	0	43	0	43	n	0.07	7	87	7	87	y	0.14	6	38	6	38	y	0.22	14	49	14	49	y	ENSMUSG00000055053.19	Nfic	chr10	protein_coding	nuclear factor I/C
known_NIR_1997	chr10	81323418	81323514	-	81323439	81323514	A3SS	ENSMUST00000020463.14	known	0.02	3	126	3	126	y	0.03	3	99	3	99	y	0.01	1	113	1	113	n	0.03	4	114	4	114	y	0.04	7	158	7	158	y	0.06	5	79	5	79	y	0.03	5	149	5	149	y	0.09	6	59	6	59	y	0.07	7	97	7	97	y	0.04	6	137	6	137	y	0.07	8	115	8	115	y	0.07	8	112	8	112	y	ENSMUSG00000020238.15	Ncln	chr10	protein_coding	nicalin
known_NIR_1998	chr10	81324189	81324262	-	81324192	81324262	A3SS	ENSMUST00000020463.14	known	0.27	35	95	35	95	y	0.25	33	100	33	100	y	0.25	40	121	40	121	y	0.26	36	104	36	104	y	0.30	54	124	54	124	y	0.28	24	62	24	62	y	0.34	61	117	61	117	y	0.31	36	82	36	82	y	0.29	36	88	36	88	y	0.36	69	123	69	123	y	0.35	51	94	51	94	y	0.32	53	112	53	112	y	ENSMUSG00000020238.15	Ncln	chr10	protein_coding	nicalin
known_NIR_1999	chr10	81400551	81400647	+	81400551	81400682	A3SS	ENSMUST00000002518.9	known	0.01	22	2077	22	2077	y	0.00	10	2161	10	2161	y	0.01	7	1127	7	1127	y	0.01	16	2015	16	2015	y	0.01	18	2348	18	2348	y	0.01	11	896	11	896	y	0.01	18	2391	18	2391	y	0.01	6	979	6	979	y	0.01	10	1954	10	1954	y	0.01	21	3004	21	3004	y	0.00	12	2453	12	2453	y	0.01	17	2624	17	2624	y	ENSMUSG00000054452.11	Tle5	chr10	protein_coding	TLE family member 5, transcriptional modulator
known_NIR_2000	chr10	81401200	81401309	+	81401200	81401306	A3SS	ENSMUST00000002518.9	known	0.06	146	2223	146	2223	y	0.07	176	2183	176	2183	y	0.05	66	1210	66	1210	y	0.08	174	2070	174	2070	y	0.06	165	2522	165	2522	y	0.06	68	1070	68	1070	y	0.07	188	2529	188	2529	y	0.08	88	1069	88	1069	y	0.07	157	2008	157	2008	y	0.07	235	3188	235	3188	y	0.06	189	2775	189	2775	y	0.07	195	2710	195	2710	y	ENSMUSG00000054452.11	Tle5	chr10	protein_coding	TLE family member 5, transcriptional modulator
known_NIR_2001	chr10	81412133	81412363	+	81412133	81412432	A3SS	ENSMUST00000140433.8	known	0.00	0	17	0	17	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	19	0	19	n	0.10	3	26	3	26	y	0.25	2	6	2	6	n	0.09	2	21	2	21	y	0.14	2	12	2	12	y	0.06	1	16	1	16	n	0.05	1	19	1	19	n	0.07	2	26	2	26	y	0.11	3	25	3	25	y	ENSMUSG00000034771.16	Tle2	chr10	protein_coding	transducin-like enhancer of split 2
known_NIR_2002	chr10	81422171	81422692	+	81422207	81422692	A5SS	ENSMUST00000140433.8	known	0.08	1	12	1	12	n	0.31	4	9	4	9	y	0.29	2	5	2	5	n	0.29	6	15	6	15	y	0.38	8	13	8	13	y	-	-	-	-	-	-	0.50	9	9	9	9	y	0.15	2	11	2	11	y	0.59	10	7	10	7	y	0.19	5	21	5	21	y	0.44	7	9	7	9	y	0.22	5	18	5	18	y	ENSMUSG00000034771.16	Tle2	chr10	protein_coding	transducin-like enhancer of split 2
known_NIR_2003	chr10	81422207	81422689	+	81422207	81422692	A3SS	ENSMUST00000140433.8	known	0.25	4	12	4	12	y	0.18	2	9	2	9	y	0.44	4	5	4	5	n	0.32	7	15	7	15	y	0.28	5	13	5	13	y	-	-	-	-	-	-	0.53	10	9	10	9	y	0.00	0	11	0	11	n	0.36	4	7	4	7	y	0.19	5	21	5	21	y	0.57	12	9	12	9	y	0.22	5	18	5	18	y	ENSMUSG00000034771.16	Tle2	chr10	protein_coding	transducin-like enhancer of split 2
known_NIR_2004	chr10	81423591	81423708	+	81423634	81423708	A5SS	ENSMUST00000140433.8	known	0.00	0	30	0	30	n	0.04	1	22	1	22	n	0.00	0	9	0	9	n	0.00	0	20	0	20	n	0.08	3	36	3	36	y	0.00	0	5	0	5	n	0.05	2	35	2	35	y	0.00	0	16	0	16	n	0.03	1	28	1	28	n	0.00	0	34	0	34	n	0.05	2	36	2	36	y	0.00	0	29	0	29	n	ENSMUSG00000034771.16	Tle2	chr10	protein_coding	transducin-like enhancer of split 2
known_NIR_2005	chr10	81425330	81426187	+	81425330	81426059	A3SS	ENSMUST00000140433.8	known	0.06	2	30	2	30	y	0.12	3	21	3	21	y	0.17	1	5	1	5	n	0.04	1	23	1	23	n	0.00	0	28	0	28	n	0.12	1	7	1	7	n	0.26	6	17	6	17	y	0.00	0	15	0	15	n	0.12	3	23	3	23	y	0.06	2	34	2	34	y	0.09	2	21	2	21	y	0.03	1	34	1	34	n	ENSMUSG00000034771.16	Tle2	chr10	protein_coding	transducin-like enhancer of split 2
known_NIR_2006	chr10	81431209	81431314	-	81431239	81431314	A3SS	ENSMUST00000128278.8	known	1.00	1	0	1	0	n	1.00	2	0	2	0	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.21	3	11	3	11	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.29	2	5	2	5	n	0.14	1	6	1	6	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000034758.13	Tle6	chr10	protein_coding	transducin-like enhancer of split 6
known_NIR_2007	chr10	81462451	81463306	-	81462451	81462726	5pMXE	ENSMUST00000119324.8	known	0.64	9	5	9	5	y	0.50	2	2	2	2	n	0.88	7	1	7	1	n	0.50	4	4	4	4	n	0.91	10	1	10	1	n	0.67	4	2	4	2	n	0.75	3	1	3	1	n	0.75	3	1	3	1	n	0.25	1	3	1	3	n	0.73	11	4	11	4	y	1.00	6	0	6	0	n	0.75	3	1	3	1	n	ENSMUSG00000034748.17	Sirt6	chr10	protein_coding	sirtuin 6
known_NIR_2008	chr10	81479727;81480977	81480810;81482139	+	81479727	81482139	cassetteExon	ENSMUST00000119336.8	known	0.18	2.0	9	2;2	9	y	0.23	3.0	10	3;3	10	y	0.50	1.0	1	2;0	1	n	0.00	0.0	8	0;0	8	n	0.33	4.5	9	8;1	9	n	0.20	1.0	4	1;1	4	n	0.00	0.0	13	0;0	13	n	0.27	1.5	4	1;2	4	n	0.00	0.0	5	0;0	5	n	0.15	2.0	11	3;1	11	n	0.20	3.5	14	3;4	14	y	0.17	1.0	5	0;2	5	n	ENSMUSG00000054708.18	Ankrd24	chr10	protein_coding	ankyrin repeat domain 24
known_NIR_2009	chr10	81894330	81895351	+	81894330;81894577	81894517;81895351	ES	ENSMUST00000210325.2	known	0.50	4	4.0	4	6;2	y	0.00	0	1.5	0	1;2	n	0.22	1	3.5	1	2;5	n	0.53	5	4.5	5	8;1	n	0.37	5	8.5	5	8;9	y	0.25	1	3.0	1	1;5	n	0.38	3	5.0	3	3;7	y	0.36	2	3.5	2	4;3	n	0.40	1	1.5	1	1;2	n	0.57	2	1.5	2	0;3	n	0.18	1	4.5	1	3;6	n	0.57	6	4.5	6	6;3	y	ENSMUSG00000061371.8	Zfp873	chr10	protein_coding	zinc finger protein 873
known_NIR_2010	chr10	82062427	82063279	-	82062427	82063365	A5SS	ENSMUST00000041264.15	known	1.00	6	0	6	0	n	0.00	0	8	0	8	n	0.50	3	3	3	3	n	0.57	4	3	4	3	n	0.50	2	2	2	2	n	-	-	-	-	-	-	0.57	4	3	4	3	n	0.25	1	3	1	3	n	0.80	4	1	4	1	n	0.62	8	5	8	5	y	0.83	5	1	5	1	n	0.88	7	1	7	1	n	ENSMUSG00000062931.16	Zfp938	chr10	protein_coding	zinc finger protein 938
known_NIR_2011	chr10	82458658	82458928	-	82458658	82458799	A5SS	ENSMUST00000079648.12	known	0.11	6	50	6	50	y	0.09	4	41	4	41	y	0.24	5	16	5	16	y	0.26	15	42	15	42	y	0.23	13	43	13	43	y	0.33	4	8	4	8	y	0.24	17	54	17	54	y	0.14	4	24	4	24	y	0.16	8	43	8	43	y	0.21	15	58	15	58	y	0.22	12	43	12	43	y	0.26	17	48	17	48	y	ENSMUSG00000063320.12	1190007I07Rik	chr10	protein_coding	RIKEN cDNA 1190007I07 gene
known_NIR_2012	chr10	82458658	82458928	-	82458658	82458987	A5SS	ENSMUST00000185168.8	known	0.75	6	2	6	2	n	0.40	4	6	4	6	y	0.83	5	1	5	1	n	0.94	15	1	15	1	n	1.00	13	0	13	0	n	1.00	4	0	4	0	n	0.81	17	4	17	4	y	1.00	4	0	4	0	n	1.00	8	0	8	0	n	0.83	15	3	15	3	y	0.86	12	2	12	2	y	0.89	17	2	17	2	y	ENSMUSG00000063320.12	1190007I07Rik	chr10	protein_coding	RIKEN cDNA 1190007I07 gene
known_NIR_2013	chr10	82458658	82458987	-	82458658	82458799	A5SS	ENSMUST00000079648.12	known	0.04	2	50	2	50	y	0.13	6	41	6	41	y	0.06	1	16	1	16	n	0.02	1	42	1	42	n	0.00	0	43	0	43	n	0.00	0	8	0	8	n	0.07	4	54	4	54	y	0.00	0	24	0	24	n	0.00	0	43	0	43	n	0.05	3	58	3	58	y	0.04	2	43	2	43	y	0.04	2	48	2	48	y	ENSMUSG00000063320.12	1190007I07Rik	chr10	protein_coding	RIKEN cDNA 1190007I07 gene
known_NIR_2014	chr10	82465872	82474535	+	82465773	82474535	A5SS	ENSMUST00000092266.11	known	0.40	4	6	4	6	y	0.71	5	2	5	2	n	0.77	41	12	41	12	y	0.85	23	4	23	4	y	0.87	20	3	20	3	y	0.64	14	8	14	8	y	0.81	17	4	17	4	y	0.87	13	2	13	2	y	0.71	10	4	10	4	y	0.69	22	10	22	10	y	0.86	6	1	6	1	n	0.77	30	9	30	9	y	ENSMUSG00000034674.19	Tdg	chr10	protein_coding	thymine DNA glycosylase
known_NIR_2015	chr10	82483912	82484415	+	82483912	82484412	A3SS	ENSMUST00000092266.11	known	0.24	9	29	9	29	y	0.27	3	8	3	8	y	0.27	21	58	21	58	y	0.28	9	23	9	23	y	0.34	17	33	17	33	y	0.14	4	24	4	24	y	0.34	11	21	11	21	y	0.38	8	13	8	13	y	0.31	8	18	8	18	y	0.39	15	23	15	23	y	0.33	12	24	12	24	y	0.21	7	27	7	27	y	ENSMUSG00000034674.19	Tdg	chr10	protein_coding	thymine DNA glycosylase
known_NIR_2016	chr10	82588438	82592536	-	82588438;82590929	82590799;82592536	ES	ENSMUST00000130911.8	known	0.04	4	100.0	4	113;87	y	0.09	9	94.0	9	104;84	y	0.09	14	138.0	14	146;130	y	0.06	9	138.0	9	142;134	y	0.09	15	146.0	15	154;138	y	0.05	3	52.5	3	54;51	y	0.05	7	139.0	7	141;137	y	0.16	14	73.0	14	77;69	y	0.06	6	100.0	6	102;98	y	0.10	18	165.0	18	211;119	y	0.10	12	106.5	12	126;87	y	0.11	20	165.5	20	180;151	y	ENSMUSG00000020248.19	Nfyb	chr10	protein_coding	nuclear transcription factor-Y beta
known_NIR_2017	chr10	82588438	82592536	-	82590929	82592536	3pMXE	ENSMUST00000128397.2	known	0.04	4	87	4	87	y	0.10	9	84	9	84	y	0.10	14	130	14	130	y	0.06	9	134	9	134	y	0.10	15	138	15	138	y	0.06	3	51	3	51	y	0.05	7	137	7	137	y	0.17	14	69	14	69	y	0.06	6	98	6	98	y	0.13	18	119	18	119	y	0.12	12	87	12	87	y	0.12	20	151	20	151	y	ENSMUSG00000020248.19	Nfyb	chr10	protein_coding	nuclear transcription factor-Y beta
known_NIR_2018	chr10	82597747	82599293	-	82597747	82599838	A5SS	ENSMUST00000130911.8	known	0.69	31	14	31	14	y	0.72	41	16	41	16	y	0.88	74	10	74	10	y	0.70	54	23	54	23	y	0.76	71	23	71	23	y	0.85	17	3	17	3	y	0.84	48	9	48	9	y	0.76	41	13	41	13	y	0.70	45	19	45	19	y	0.80	66	17	66	17	y	0.72	34	13	34	13	y	0.78	76	22	76	22	y	ENSMUSG00000020248.19	Nfyb	chr10	protein_coding	nuclear transcription factor-Y beta
known_NIR_2019	chr10	82695134	82710447	+	82695134	82696358	3pMXE	ENSMUST00000218082.2	known	0.22	17	59	17	59	y	0.21	15	55	15	55	y	0.17	36	170	36	170	y	0.16	27	142	27	142	y	0.17	35	175	35	175	y	0.13	10	65	10	65	y	0.12	16	120	16	120	y	0.16	13	66	13	66	y	0.14	12	73	12	73	y	0.20	31	122	31	122	y	0.15	12	67	12	67	y	0.09	11	114	11	114	y	ENSMUSG00000020250.12	Txnrd1	chr10	protein_coding	thioredoxin reductase 1
known_NIR_2020	chr10	82695134	82710447	+	82696464	82710447	5pMXE	ENSMUST00000219442.3	known	0.14	17	108	17	108	y	0.18	15	70	15	70	y	0.16	36	192	36	192	y	0.11	27	209	27	209	y	0.15	35	194	35	194	y	0.12	10	74	10	74	y	0.09	16	163	16	163	y	0.14	13	82	13	82	y	0.10	12	108	12	108	y	0.16	31	160	31	160	y	0.13	12	81	12	81	y	0.06	11	163	11	163	y	ENSMUSG00000020250.12	Txnrd1	chr10	protein_coding	thioredoxin reductase 1
known_NIR_2021	chr10	82695134	82710447	+	82709109	82710447	A5SS&ES	ENSMUST00000219368.3	known	1.00	17	0	17	0	n	1.00	15	0	15	0	n	1.00	36	0	36	0	n	1.00	27	0	27	0	n	0.97	35	1	35	1	n	0.77	10	3	10	3	y	1.00	16	0	16	0	n	1.00	13	0	13	0	n	1.00	12	0	12	0	n	1.00	31	0	31	0	n	1.00	12	0	12	0	n	1.00	11	0	11	0	n	ENSMUSG00000020250.12	Txnrd1	chr10	protein_coding	thioredoxin reductase 1
known_NIR_2022	chr10	82695134;82696464	82696358;82710447	+	82695134	82710447	cassetteExon	ENSMUST00000020484.9	known	0.83	83.5	17	59;108	17	y	0.81	62.5	15	55;70	15	y	0.83	181.0	36	170;192	36	y	0.87	175.5	27	142;209	27	y	0.84	184.5	35	175;194	35	y	0.87	69.5	10	65;74	10	y	0.90	141.5	16	120;163	16	y	0.85	74.0	13	66;82	13	y	0.88	90.5	12	73;108	12	y	0.82	141.0	31	122;160	31	y	0.86	74.0	12	67;81	12	y	0.93	138.5	11	114;163	11	y	ENSMUSG00000020250.12	Txnrd1	chr10	protein_coding	thioredoxin reductase 1
known_NIR_2023	chr10	82696464	82710447	+	82709109	82710447	A5SS&ES	ENSMUST00000219368.3	known	1.00	108	0	108	0	n	1.00	70	0	70	0	n	1.00	192	0	192	0	n	1.00	209	0	209	0	n	0.99	194	1	194	1	n	0.96	74	3	74	3	y	1.00	163	0	163	0	n	1.00	82	0	82	0	n	1.00	108	0	108	0	n	1.00	160	0	160	0	n	1.00	81	0	81	0	n	1.00	163	0	163	0	n	ENSMUSG00000020250.12	Txnrd1	chr10	protein_coding	thioredoxin reductase 1
known_NIR_2024	chr10	83152653	83158703	-	83152653	83173624	A5SS	ENSMUST00000039956.6	known	0.00	0	9	0	9	n	0.62	8	5	8	5	y	0.38	23	38	23	38	y	0.68	17	8	17	8	y	0.52	11	10	11	10	y	0.22	4	14	4	14	y	0.75	9	3	9	3	y	0.38	8	13	8	13	y	0.00	0	4	0	4	n	0.56	5	4	5	4	n	0.60	3	2	3	2	n	0.36	10	18	10	18	y	ENSMUSG00000034591.6	Slc41a2	chr10	protein_coding	solute carrier family 41, member 2
known_NIR_2025	chr10	83152653	83173090	-	83152653	83158703	5pMXE	ENSMUST00000154926.2	known	-	-	-	-	-	-	0.00	0	8	0	8	n	0.30	10	23	10	23	y	0.00	0	17	0	17	n	0.35	6	11	6	11	y	0.50	4	4	4	4	n	0.31	4	9	4	9	y	0.20	2	8	2	8	y	-	-	-	-	-	-	0.38	3	5	3	5	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	ENSMUSG00000034591.6	Slc41a2	chr10	protein_coding	solute carrier family 41, member 2
known_NIR_2026	chr10	83152653	83173090	-	83152653	83173624	A5SS	ENSMUST00000039956.6	known	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.21	10	38	10	38	y	0.00	0	8	0	8	n	0.38	6	10	6	10	y	0.22	4	14	4	14	y	0.57	4	3	4	3	n	0.13	2	13	2	13	y	0.00	0	4	0	4	n	0.43	3	4	3	4	n	0.00	0	2	0	2	n	0.00	0	18	0	18	n	ENSMUSG00000034591.6	Slc41a2	chr10	protein_coding	solute carrier family 41, member 2
known_NIR_2027	chr10	83391479	83391877	+	83391479	83391865	A3SS	ENSMUST00000217842.2	known	0.77	10	3	10	3	y	1.00	6	0	6	0	n	0.82	14	3	14	3	y	1.00	22	0	22	0	n	1.00	23	0	23	0	n	1.00	5	0	5	0	n	1.00	7	0	7	0	n	1.00	10	0	10	0	n	0.88	7	1	7	1	n	1.00	14	0	14	0	n	1.00	8	0	8	0	n	0.64	7	4	7	4	y	ENSMUSG00000034560.7	Washc4	chr10	protein_coding	WASH complex subunit 4
known_NIR_2028	chr10	83436691	83437747	-	83436905	83437747	A3SS	ENSMUST00000020500.14	known	0.03	1	29	1	29	n	0.19	4	17	4	17	y	0.23	9	30	9	30	y	0.19	5	21	5	21	y	0.19	8	35	8	35	y	0.31	4	9	4	9	y	0.24	9	29	9	29	y	0.19	4	17	4	17	y	0.13	5	33	5	33	y	0.26	13	37	13	37	y	0.16	6	32	6	32	y	0.14	7	42	7	42	y	ENSMUSG00000020263.15	Appl2	chr10	protein_coding	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2
known_NIR_2029	chr10	83450159	83453211	-	83450166	83453211	A3SS	ENSMUST00000020500.14	known	0.06	1	15	1	15	n	0.20	2	8	2	8	y	0.03	1	32	1	32	n	0.00	0	32	0	32	n	0.07	3	43	3	43	y	0.08	1	12	1	12	n	0.00	0	31	0	31	n	0.17	3	15	3	15	y	0.08	2	24	2	24	y	0.00	0	31	0	31	n	0.00	0	29	0	29	n	0.00	0	38	0	38	n	ENSMUSG00000020263.15	Appl2	chr10	protein_coding	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2
known_NIR_2030	chr10	83457614	83460483	-	83457617	83460483	A3SS	ENSMUST00000020500.14	known	0.00	0	18	0	18	n	0.00	0	12	0	12	n	0.00	0	32	0	32	n	0.00	0	24	0	24	n	0.05	2	40	2	40	y	0.00	0	14	0	14	n	0.00	0	22	0	22	n	0.00	0	13	0	13	n	0.00	0	23	0	23	n	0.07	2	25	2	25	y	0.00	0	12	0	12	n	0.00	0	19	0	19	n	ENSMUSG00000020263.15	Appl2	chr10	protein_coding	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2
known_NIR_2031	chr10	83464697	83471949	-	83464697	83476870	A5SS	ENSMUST00000020500.14	known	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.19	3	13	3	13	y	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.25	3	9	3	9	y	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	19	0	19	n	0.00	0	16	0	16	n	0.08	1	11	1	11	n	0.00	0	21	0	21	n	ENSMUSG00000020263.15	Appl2	chr10	protein_coding	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2
known_NIR_2032	chr10	84761457	84783276	+	84761457	84793880	A3SS	ENSMUST00000214693.2	known	1.00	6	0	6	0	n	1.00	2	0	2	0	n	1.00	24	0	24	0	n	1.00	11	0	11	0	n	1.00	15	0	15	0	n	1.00	9	0	9	0	n	0.87	13	2	13	2	y	1.00	14	0	14	0	n	1.00	2	0	2	0	n	1.00	14	0	14	0	n	1.00	1	0	1	0	n	1.00	4	0	4	0	n	ENSMUSG00000035620.16	Ric8b	chr10	protein_coding	RIC8 guanine nucleotide exchange factor B
known_NIR_2033	chr10	84761457	84793880	+	84761457;84783884	84783276;84793880	ES	ENSMUST00000038523.15	known	0.00	0	7.0	0	6;8	n	0.00	0	8.0	0	2;14	n	0.00	0	25.0	0	24;26	n	0.00	0	13.5	0	11;16	n	0.00	0	15.5	0	15;16	n	0.00	0	8.0	0	9;7	n	0.16	2	10.5	2	13;8	y	0.00	0	12.0	0	14;10	n	0.00	0	5.5	0	2;9	n	0.00	0	17.5	0	14;21	n	0.00	0	7.0	0	1;13	n	0.00	0	11.5	0	4;19	n	ENSMUSG00000035620.16	Ric8b	chr10	protein_coding	RIC8 guanine nucleotide exchange factor B
known_NIR_2034	chr10	84783884	84793880	+	84761457	84793880	A5SS	ENSMUST00000214693.2	known	1.00	8	0	8	0	n	1.00	14	0	14	0	n	1.00	26	0	26	0	n	1.00	16	0	16	0	n	1.00	16	0	16	0	n	1.00	7	0	7	0	n	0.80	8	2	8	2	y	1.00	10	0	10	0	n	1.00	9	0	9	0	n	1.00	21	0	21	0	n	1.00	13	0	13	0	n	1.00	19	0	19	0	n	ENSMUSG00000035620.16	Ric8b	chr10	protein_coding	RIC8 guanine nucleotide exchange factor B
known_NIR_2035	chr10	84828128	84850940	+	84828128;84837765	84837646;84850940	ES	ENSMUST00000038523.15	known	0.89	17	2.0	17	1;3	n	0.69	9	4.0	9	7;1	n	0.77	23	7.0	23	9;5	y	0.98	20	0.5	20	1;0	n	0.64	16	9.0	16	13;5	y	0.67	11	5.5	11	8;3	y	0.74	20	7.0	20	6;8	y	0.63	12	7.0	12	10;4	y	0.79	11	3.0	11	3;3	y	0.69	12	5.5	12	6;5	y	0.67	11	5.5	11	6;5	y	0.82	18	4.0	18	8;0	n	ENSMUSG00000035620.16	Ric8b	chr10	protein_coding	RIC8 guanine nucleotide exchange factor B
known_NIR_2036	chr10	84845491	84850940	+	84828128	84850940	A5SS	ENSMUST00000095385.5	known	0.15	3	17	3	17	y	0.18	2	9	2	9	y	0.12	3	23	3	23	y	0.09	2	20	2	20	y	0.16	3	16	3	16	y	0.00	0	11	0	11	n	0.09	2	20	2	20	y	0.14	2	12	2	12	y	0.08	1	11	1	11	n	0.14	2	12	2	12	y	0.08	1	11	1	11	n	0.14	3	18	3	18	y	ENSMUSG00000035620.16	Ric8b	chr10	protein_coding	RIC8 guanine nucleotide exchange factor B
known_NIR_2037	chr10	84845491	84850940	+	84837765	84850940	A5SS	ENSMUST00000038523.15	known	0.50	3	3	3	3	n	0.67	2	1	2	1	n	0.38	3	5	3	5	n	1.00	2	0	2	0	n	0.38	3	5	3	5	n	0.00	0	3	0	3	n	0.20	2	8	2	8	y	0.33	2	4	2	4	n	0.25	1	3	1	3	n	0.29	2	5	2	5	n	0.17	1	5	1	5	n	1.00	3	0	3	0	n	ENSMUSG00000035620.16	Ric8b	chr10	protein_coding	RIC8 guanine nucleotide exchange factor B
known_NIR_2038	chr10	85740113	85741213	-	85740134	85741213	A3SS	ENSMUST00000220032.2	known	0.44	4	5	4	5	n	0.71	5	2	5	2	n	0.81	30	7	30	7	y	0.64	9	5	9	5	y	0.58	11	8	11	8	y	0.71	5	2	5	2	n	0.82	18	4	18	4	y	0.57	4	3	4	3	n	0.86	6	1	6	1	n	0.78	14	4	14	4	y	0.00	0	2	0	2	n	0.88	14	2	14	2	y	ENSMUSG00000035529.11	Prdm4	chr10	protein_coding	PR domain containing 4
known_NIR_2039	chr10	85858008	85860432	+	85858008	85860280	A3SS	ENSMUST00000130320.8	known	0.00	0	41	0	41	n	0.17	2	10	2	10	y	0.14	3	19	3	19	y	0.00	0	24	0	24	n	0.00	0	43	0	43	n	0.00	0	10	0	10	n	0.12	4	30	4	30	y	0.00	0	21	0	21	n	0.00	0	27	0	27	n	0.00	0	40	0	40	n	0.07	2	26	2	26	y	0.10	4	37	4	37	y	ENSMUSG00000001786.15	Fbxo7	chr10	protein_coding	F-box protein 7
known_NIR_2040	chr10	85858194	85860280	+	85858008	85860280	A5SS	ENSMUST00000130320.8	known	0.00	0	41	0	41	n	0.17	2	10	2	10	y	0.21	5	19	5	19	y	0.23	7	24	7	24	y	0.14	7	43	7	43	y	0.17	2	10	2	10	y	0.14	5	30	5	30	y	0.28	8	21	8	21	y	0.13	4	27	4	27	y	0.20	10	40	10	40	y	0.04	1	26	1	26	n	0.16	7	37	7	37	y	ENSMUSG00000001786.15	Fbxo7	chr10	protein_coding	F-box protein 7
known_NIR_2041	chr10	85858194	85860280	+	85858194	85860432	A3SS	ENSMUST00000120344.8	known	0.00	0	3	0	3	n	1.00	2	0	2	0	n	0.62	5	3	5	3	n	0.78	7	2	7	2	n	0.58	7	5	7	5	y	0.33	2	4	2	4	n	0.50	5	5	5	5	y	0.80	8	2	8	2	y	0.67	4	2	4	2	n	0.83	10	2	10	2	y	0.20	1	4	1	4	n	0.37	7	12	7	12	y	ENSMUSG00000001786.15	Fbxo7	chr10	protein_coding	F-box protein 7
known_NIR_2042	chr10	85858194	85860432	+	85858008	85860432	A5SS	ENSMUST00000147168.2	known	1.00	3	0	3	0	n	0.00	0	2	0	2	n	0.50	3	3	3	3	n	1.00	2	0	2	0	n	1.00	5	0	5	0	n	1.00	4	0	4	0	n	0.56	5	4	5	4	n	1.00	2	0	2	0	n	1.00	2	0	2	0	n	1.00	2	0	2	0	n	0.67	4	2	4	2	n	0.75	12	4	12	4	y	ENSMUSG00000001786.15	Fbxo7	chr10	protein_coding	F-box protein 7
known_NIR_2043	chr10	86531827	86534183	-	86531827;86532699	86532583;86534183	ES	ENSMUST00000129178.8	known	0.00	0	1303.5	0	1359;1248	n	0.00	0	1142.0	0	1206;1078	n	0.00	3	4014.0	3	4080;3948	y	0.00	0	1555.0	0	1558;1552	n	0.00	0	3039.5	0	3082;2997	n	0.00	0	2636.5	0	2726;2547	n	0.00	0	1755.5	0	1812;1699	n	0.00	0	2335.0	0	2381;2289	n	0.00	0	1408.5	0	1406;1411	n	0.00	0	2007.5	0	2028;1987	n	0.00	0	1418.0	0	1491;1345	n	0.00	0	2020.0	0	2080;1960	n	ENSMUSG00000020048.14	Hsp90b1	chr10	protein_coding	heat shock protein 90, beta (Grp94), member 1
known_NIR_2044	chr10	86572863	86586111	+	86572863;86580468	86580290;86586111	ES	ENSMUST00000075632.14	known	0.25	2	6.0	2	7;5	y	0.40	1	1.5	1	0;3	n	0.25	2	6.0	2	8;4	y	0.00	0	3.5	0	3;4	n	0.08	1	12.0	1	14;10	n	0.00	0	5.0	0	3;7	n	0.12	1	7.5	1	4;11	n	0.13	1	6.5	1	5;8	n	0.44	2	2.5	2	4;1	n	0.00	0	4.5	0	2;7	n	0.00	0	8.0	0	11;5	n	0.00	0	3.0	0	3;3	n	ENSMUSG00000044937.16	Ttc41	chr10	protein_coding	tetratricopeptide repeat domain 41
known_NIR_2045	chr10	86595040	86596630	+	86595100	86596630	A5SS	ENSMUST00000075632.14	known	0.46	6	7	6	7	y	0.12	1	7	1	7	n	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.33	2	4	2	4	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.22	2	7	2	7	n	ENSMUSG00000044937.16	Ttc41	chr10	protein_coding	tetratricopeptide repeat domain 41
known_NIR_2046	chr10	86754733	86754880	-	86743295	86754880	A3SS	ENSMUST00000035288.17	known	0.62	5	3	5	3	n	0.40	2	3	2	3	n	0.67	4	2	4	2	n	0.25	1	3	1	3	n	0.25	3	9	3	9	y	0.09	1	10	1	10	n	0.33	2	4	2	4	n	0.40	2	3	2	3	n	0.00	0	2	0	2	n	0.57	4	3	4	3	n	0.50	7	7	7	7	y	0.00	0	7	0	7	n	ENSMUSG00000035459.19	Stab2	chr10	protein_coding	stabilin 2
known_NIR_2047	chr10	87374102	87417777	+	87364250	87417777	A5SS	ENSMUST00000219813.2	known	0.50	29	29	29	29	y	1.00	20	0	20	0	n	-	-	-	-	-	-	0.61	46	29	46	29	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	25	0	25	n	0.70	57	24	57	24	y	0.55	33	27	33	27	y	0.60	67	44	67	44	y	ENSMUSG00000020051.18	Pah	chr10	protein_coding	phenylalanine hydroxylase
known_NIR_2048	chr10	87382593	87390208	+	87374187	87390208	A5SS	ENSMUST00000020241.17	known	0.00	2	1379	2	1379	y	0.00	1	762	1	762	n	0.03	2	62	2	62	y	0.00	0	1710	0	1710	n	0.00	1	1005	1	1005	n	0.01	1	91	1	91	n	0.00	3	990	3	990	y	0.03	6	190	6	190	y	0.00	0	1450	0	1450	n	0.00	1	1842	1	1842	n	0.00	0	1561	0	1561	n	0.00	0	2596	0	2596	n	ENSMUSG00000020051.18	Pah	chr10	protein_coding	phenylalanine hydroxylase
known_NIR_2049	chr10	87697247	87700593	+	87695274	87700593	A5SS	ENSMUST00000122386.8	known	0.54	1001	837	1001	837	y	0.58	919	656	919	656	y	0.55	1390	1137	1390	1137	y	0.58	1291	917	1291	917	y	0.54	1289	1115	1289	1115	y	0.57	813	614	813	614	y	0.55	1249	1036	1249	1036	y	0.59	778	538	778	538	y	0.56	1001	787	1001	787	y	0.56	1342	1037	1342	1037	y	0.55	1077	892	1077	892	y	0.54	1439	1204	1439	1204	y	ENSMUSG00000020053.19	Igf1	chr10	protein_coding	insulin-like growth factor 1
known_NIR_2050	chr10	87749662	87766537	+	87749662	87751160	3pMXE	ENSMUST00000126490.8	known	0.60	1546	1041	1546	1041	y	0.64	1642	907	1642	907	y	0.53	1567	1366	1567	1366	y	0.59	1593	1119	1593	1119	y	0.61	1826	1180	1826	1180	y	0.56	1022	787	1022	787	y	0.60	1801	1206	1801	1206	y	0.60	988	654	988	654	y	0.62	1454	875	1454	875	y	0.62	2001	1212	2001	1212	y	0.62	1826	1130	1826	1130	y	0.60	2171	1431	2171	1431	y	ENSMUSG00000020053.19	Igf1	chr10	protein_coding	insulin-like growth factor 1
known_NIR_2051	chr10	87749662;87751211	87751160;87766537	+	87749662	87766537	cassetteExon	ENSMUST00000122386.8	known	0.39	968.0	1546	1041;895	1546	y	0.34	848.0	1642	907;789	1642	y	0.45	1259.5	1567	1366;1153	1567	y	0.39	998.5	1593	1119;878	1593	y	0.37	1092.5	1826	1180;1005	1826	y	0.41	701.5	1022	787;616	1022	y	0.38	1101.5	1801	1206;997	1801	y	0.37	589.0	988	654;524	988	y	0.36	807.5	1454	875;740	1454	y	0.35	1088.5	2001	1212;965	2001	y	0.37	1050.0	1826	1130;970	1826	y	0.37	1280.5	2171	1431;1130	2171	y	ENSMUSG00000020053.19	Igf1	chr10	protein_coding	insulin-like growth factor 1
known_NIR_2052	chr10	87983031	87984024	+	87982934	87984024	A5SS	ENSMUST00000052355.15	known	0.22	2	7	2	7	n	0.50	3	3	3	3	n	0.71	5	2	5	2	n	0.33	1	2	1	2	n	0.47	8	9	8	9	y	1.00	4	0	4	0	n	0.45	5	6	5	6	y	0.00	0	2	0	2	n	0.20	2	8	2	8	y	0.43	3	4	3	4	n	0.44	4	5	4	5	n	0.25	3	9	3	9	y	ENSMUSG00000035351.17	Nup37	chr10	protein_coding	nucleoporin 37
known_NIR_2053	chr10	88010795	88013996	+	88010795	88012935	3pMXE	ENSMUST00000219059.2	known	0.00	0	15	0	15	n	0.00	0	15	0	15	n	0.04	1	24	1	24	n	0.00	0	22	0	22	n	0.00	0	21	0	21	n	0.00	0	6	0	6	n	0.18	3	14	3	14	y	0.00	0	5	0	5	n	0.14	3	19	3	19	y	0.09	2	20	2	20	y	0.15	2	11	2	11	y	0.04	1	23	1	23	n	ENSMUSG00000035351.17	Nup37	chr10	protein_coding	nucleoporin 37
known_NIR_2054	chr10	88010795	88013996	+	88010795;88013028	88012935;88013996	ES	ENSMUST00000052355.15	known	0.00	0	15.5	0	15;16	n	0.00	0	18.5	0	15;22	n	0.05	1	20.5	1	24;17	n	0.00	0	16.5	0	22;11	n	0.00	0	19.0	0	21;17	n	0.00	0	6.0	0	6;6	n	0.16	3	15.5	3	14;17	y	0.00	0	9.5	0	5;14	n	0.15	3	17.0	3	19;15	y	0.08	2	24.0	2	20;28	y	0.15	2	11.0	2	11;11	y	0.05	1	20.0	1	23;17	n	ENSMUSG00000035351.17	Nup37	chr10	protein_coding	nucleoporin 37
known_NIR_2055	chr10	88049574	88051845	+	88049574	88051829	A3SS	ENSMUST00000020248.16	known	0.00	0	98	0	98	n	0.00	0	92	0	92	n	0.00	0	89	0	89	n	0.00	0	102	0	102	n	0.02	2	92	2	92	y	0.00	0	63	0	63	n	0.00	0	128	0	128	n	0.00	0	71	0	71	n	0.00	0	97	0	97	n	0.00	0	124	0	124	n	0.00	0	109	0	109	n	0.00	0	109	0	109	n	ENSMUSG00000020056.17	Washc3	chr10	protein_coding	WASH complex subunit 3
known_NIR_2056	chr10	88051936	88055115	+	88051936	88055112	A3SS	ENSMUST00000020248.16	known	0.17	24	120	24	120	y	0.20	26	104	26	104	y	0.30	39	93	39	93	y	0.27	34	93	34	93	y	0.21	31	117	31	117	y	0.26	22	62	22	62	y	0.23	39	129	39	129	y	0.28	20	51	20	51	y	0.28	30	79	30	79	y	0.22	38	135	38	135	y	0.31	43	94	43	94	y	0.21	27	99	27	99	y	ENSMUSG00000020056.17	Washc3	chr10	protein_coding	WASH complex subunit 3
known_NIR_2057	chr10	88055222	88060894	+	88055222	88070256	A3SS	ENSMUST00000020248.16	known	0.00	0	138	0	138	n	0.02	3	122	3	122	y	0.05	6	106	6	106	y	0.03	3	114	3	114	y	0.04	6	150	6	150	y	0.04	3	67	3	67	y	0.03	5	146	5	146	y	0.02	1	58	1	58	n	0.00	0	98	0	98	n	0.01	1	174	1	174	n	0.00	0	135	0	135	n	0.02	2	117	2	117	y	ENSMUSG00000020056.17	Washc3	chr10	protein_coding	WASH complex subunit 3
known_NIR_2058	chr10	88308846	88311195	-	88308846	88311288	A5SS	ENSMUST00000117440.8	known	0.31	186	408	186	408	y	0.28	174	444	174	444	y	0.40	189	288	189	288	y	0.31	170	382	170	382	y	0.32	248	521	248	521	y	0.27	84	227	84	227	y	0.31	301	660	301	660	y	0.34	157	305	157	305	y	0.33	161	327	161	327	y	0.30	280	665	280	665	y	0.36	245	441	245	441	y	0.36	218	385	218	385	y	ENSMUSG00000060002.15	Chpt1	chr10	protein_coding	choline phosphotransferase 1
known_NIR_2059	chr10	88308846	88311288	-	88307322	88311288	A3SS	ENSMUST00000148899.8	known	1.00	408	2	408	2	y	1.00	444	0	444	0	n	1.00	288	0	288	0	n	1.00	382	0	382	0	n	1.00	521	0	521	0	n	1.00	227	0	227	0	n	1.00	660	0	660	0	n	1.00	305	0	305	0	n	1.00	327	1	327	1	n	1.00	665	0	665	0	n	1.00	441	0	441	0	n	0.99	385	5	385	5	y	ENSMUSG00000060002.15	Chpt1	chr10	protein_coding	choline phosphotransferase 1
known_NIR_2060	chr10	88321873	88324244	-	88318177	88324244	A3SS	ENSMUST00000117440.8	known	0.01	4	531	4	531	y	0.01	4	510	4	510	y	0.00	1	589	1	589	n	0.00	0	726	0	726	n	0.00	2	1011	2	1011	y	0.00	0	372	0	372	n	0.00	0	1015	0	1015	n	0.00	2	587	2	587	y	0.00	0	559	0	559	n	0.00	5	1088	5	1088	y	0.00	2	625	2	625	y	0.01	6	746	6	746	y	ENSMUSG00000060002.15	Chpt1	chr10	protein_coding	choline phosphotransferase 1
known_NIR_2061	chr10	88323124	88324244	-	88318177	88324244	A3SS	ENSMUST00000117440.8	known	0.04	23	531	23	531	y	0.06	32	510	32	510	y	0.05	34	589	34	589	y	0.05	35	726	35	726	y	0.06	69	1011	69	1011	y	0.03	13	372	13	372	y	0.08	83	1015	83	1015	y	0.06	37	587	37	587	y	0.03	17	559	17	559	y	0.03	36	1088	36	1088	y	0.07	48	625	48	625	y	0.03	24	746	24	746	y	ENSMUSG00000060002.15	Chpt1	chr10	protein_coding	choline phosphotransferase 1
known_NIR_2062	chr10	88323124	88324244	-	88321873	88324244	A3SS	ENSMUST00000117579.8	known	0.85	23	4	23	4	y	0.89	32	4	32	4	y	0.97	34	1	34	1	n	1.00	35	0	35	0	n	0.97	69	2	69	2	y	1.00	13	0	13	0	n	1.00	83	0	83	0	n	0.95	37	2	37	2	y	1.00	17	0	17	0	n	0.88	36	5	36	5	y	0.96	48	2	48	2	y	0.80	24	6	24	6	y	ENSMUSG00000060002.15	Chpt1	chr10	protein_coding	choline phosphotransferase 1
known_NIR_2063	chr10	88354431	88358829	-	88354431;88355805	88355763;88358829	ES	ENSMUST00000121629.8	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.02	2	120.0	2	106;134	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	0.5	0	0;1	n	ENSMUSG00000020061.19	Mybpc1	chr10	protein_coding	myosin binding protein C, slow-type
known_NIR_2064	chr10	88355805;88357197	88357139;88358829	-	88355805	88358829	cassetteExon	ENSMUST00000121629.8	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.07	10.5	134	7;14	134	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0.0	1	0;0	1	n	ENSMUSG00000020061.19	Mybpc1	chr10	protein_coding	myosin binding protein C, slow-type
known_NIR_2065	chr10	88357197	88358829	-	88354431	88358829	A3SS	ENSMUST00000124144.2	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.88	14	2	14	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020061.19	Mybpc1	chr10	protein_coding	myosin binding protein C, slow-type
known_NIR_2066	chr10	88372344;88373381	88373328;88376811	-	88372344	88376811	cassetteExon	ENSMUST00000121629.8	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.02	3.0	181	2;4	181	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020061.19	Mybpc1	chr10	protein_coding	myosin binding protein C, slow-type
known_NIR_2067	chr10	88409391	88421522	-	88409391;88417910	88417869;88421522	ES	ENSMUST00000121629.8	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.21	7	26.0	7	12;40	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020061.19	Mybpc1	chr10	protein_coding	myosin binding protein C, slow-type
known_NIR_2068	chr10	88567900	88569405	+	88567426	88569405	A5SS	ENSMUST00000170137.8	known	0.01	3	205	3	205	y	0.01	1	146	1	146	n	0.00	1	386	1	386	n	0.02	6	294	6	294	y	0.01	3	307	3	307	y	0.00	0	181	0	181	n	0.00	0	258	0	258	n	0.00	0	210	0	210	n	0.00	0	207	0	207	n	0.01	2	275	2	275	y	0.02	5	203	5	203	y	0.03	9	315	9	315	y	ENSMUSG00000060904.15	Arl1	chr10	protein_coding	ADP-ribosylation factor-like 1
known_NIR_2069	chr10	89316489	89319234	-	89316489	89319246	A5SS	ENSMUST00000058126.15	known	0.44	129	165	129	165	y	0.46	118	141	118	141	y	0.33	83	165	83	165	y	0.45	160	193	160	193	y	0.39	206	329	206	329	y	0.31	50	112	50	112	y	0.43	180	243	180	243	y	0.40	95	143	95	143	y	0.44	128	160	128	160	y	0.46	194	227	194	227	y	0.45	129	156	129	156	y	0.41	156	223	156	223	y	ENSMUSG00000047638.16	Nr1h4	chr10	protein_coding	nuclear receptor subfamily 1, group H, member 4
known_NIR_2070	chr10	89334279	89352299	-	89334279	89342370	5pMXE	ENSMUST00000058126.15	known	0.56	134	105	134	105	y	0.58	103	74	103	74	y	0.56	100	79	100	79	y	0.48	127	135	127	135	y	0.47	182	203	182	203	y	0.50	70	69	70	69	y	0.45	150	186	150	186	y	0.49	102	108	102	108	y	0.52	110	102	110	102	y	0.45	174	212	174	212	y	0.44	87	110	87	110	y	0.51	154	149	154	149	y	ENSMUSG00000047638.16	Nr1h4	chr10	protein_coding	nuclear receptor subfamily 1, group H, member 4
known_NIR_2071	chr10	89481416	89481539	-	89481419	89481539	A3SS	ENSMUST00000174252.8	known	0.62	24	15	24	15	y	0.65	20	11	20	11	y	0.48	43	46	43	46	y	0.63	31	18	31	18	y	0.56	42	33	42	33	y	0.50	27	27	27	27	y	0.49	34	36	34	36	y	0.46	12	14	12	14	y	0.54	19	16	19	16	y	0.52	32	30	32	30	y	0.60	27	18	27	18	y	0.48	20	22	20	22	y	ENSMUSG00000069539.12	Scyl2	chr10	protein_coding	SCY1-like 2 (S. cerevisiae)
known_NIR_2072	chr10	89561815	89562499	-	89561765	89562499	A3SS	ENSMUST00000020109.5	known	0.00	0	18	0	18	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.20	3	12	3	12	y	0.04	1	25	1	25	n	0.00	0	9	0	9	n	0.03	1	31	1	31	n	0.00	0	10	0	10	n	0.05	1	21	1	21	n	0.15	6	33	6	33	y	0.00	0	15	0	15	n	0.03	1	28	1	28	n	ENSMUSG00000019948.5	Actr6	chr10	protein_coding	ARP6 actin-related protein 6
known_NIR_2073	chr10	89564084	89568036	-	89564084	89564762	A5SS&ES	ENSMUST00000218568.2	known	0.09	2	21	2	21	y	0.00	0	13	0	13	n	0.18	2	9	2	9	y	0.05	1	19	1	19	n	0.03	1	28	1	28	n	0.00	0	8	0	8	n	0.14	4	25	4	25	y	0.00	0	20	0	20	n	0.13	2	13	2	13	y	0.00	0	17	0	17	n	0.07	2	25	2	25	y	0.12	3	22	3	22	y	ENSMUSG00000019948.5	Actr6	chr10	protein_coding	ARP6 actin-related protein 6
known_NIR_2074	chr10	89564084	89568036	-	89564084;89564879	89564762;89568036	ES	ENSMUST00000020109.5	known	0.08	2	24.5	2	21;28	y	0.00	0	15.0	0	13;17	n	0.15	2	11.0	2	9;13	y	0.03	1	28.5	1	19;38	n	0.03	1	31.0	1	28;34	n	0.00	0	11.0	0	8;14	n	0.11	4	33.0	4	25;41	y	0.00	0	25.0	0	20;30	n	0.12	2	14.5	2	13;16	y	0.00	0	18.0	0	17;19	n	0.07	2	28.0	2	25;31	y	0.10	3	27.0	3	22;32	y	ENSMUSG00000019948.5	Actr6	chr10	protein_coding	ARP6 actin-related protein 6
known_NIR_2075	chr10	89564879	89567900	-	89564879	89568036	A5SS	ENSMUST00000020109.5	known	0.07	2	28	2	28	y	0.00	0	17	0	17	n	0.00	0	13	0	13	n	0.00	0	38	0	38	n	0.08	3	34	3	34	y	0.00	0	14	0	14	n	0.00	0	41	0	41	n	0.00	0	30	0	30	n	0.00	0	16	0	16	n	0.00	0	19	0	19	n	0.00	0	31	0	31	n	0.00	0	32	0	32	n	ENSMUSG00000019948.5	Actr6	chr10	protein_coding	ARP6 actin-related protein 6
known_NIR_2076	chr10	89581150;89591416	89591283;89608449	+	89581150	89608449	cassetteExon	ENSMUST00000020112.7	known	0.15	3.0	17	2;4	17	y	0.24	3.5	11	6;1	11	n	0.13	5.0	33	4;6	33	y	0.10	3.0	27	4;2	27	y	0.10	4.0	36	5;3	36	y	0.36	4.5	8	4;5	8	y	0.16	2.5	13	3;2	13	y	0.07	1.5	19	2;1	19	n	0.13	1.5	10	2;1	10	n	0.15	4.5	25	3;6	25	y	0.12	1.5	11	1;2	11	n	0.14	3.0	19	3;3	19	y	ENSMUSG00000019951.11	Uhrf1bp1l	chr10	protein_coding	UHRF1 (ICBP90) binding protein 1-like
known_NIR_2077	chr10	89627343	89638881	+	89627343;89630486	89630345;89638881	ES	ENSMUST00000020112.7	known	0.18	7	32.5	7	38;27	y	0.09	2	21.5	2	21;22	y	0.02	1	41.0	1	55;27	n	0.11	4	32.5	4	31;34	y	0.06	4	65.5	4	66;65	y	0.00	0	18.0	0	21;15	n	0.07	3	37.0	3	41;33	y	0.00	0	30.5	0	38;23	n	0.16	5	26.5	5	25;28	y	0.06	3	46.0	3	53;39	y	0.19	6	25.5	6	30;21	y	0.14	7	44.5	7	42;47	y	ENSMUSG00000019951.11	Uhrf1bp1l	chr10	protein_coding	UHRF1 (ICBP90) binding protein 1-like
known_NIR_2078	chr10	89645625	89647349	+	89645640	89647349	A5SS	ENSMUST00000020112.7	known	0.18	10	46	10	46	y	0.09	4	42	4	42	y	0.09	6	58	6	58	y	0.05	4	73	4	73	y	0.09	12	117	12	117	y	0.08	2	24	2	24	y	0.07	5	64	5	64	y	0.12	7	50	7	50	y	0.14	8	50	8	50	y	0.11	8	64	8	64	y	0.10	6	55	6	55	y	0.05	4	78	4	78	y	ENSMUSG00000019951.11	Uhrf1bp1l	chr10	protein_coding	UHRF1 (ICBP90) binding protein 1-like
known_NIR_2079	chr10	89647803	89647906	+	89647602	89647906	A5SS	ENSMUST00000020112.7	known	0.00	0	71	0	71	n	0.00	0	46	0	46	n	0.00	0	88	0	88	n	0.00	0	69	0	69	n	0.00	0	126	0	126	n	0.00	0	36	0	36	n	0.00	0	76	0	76	n	0.00	0	50	0	50	n	0.03	2	66	2	66	y	0.00	0	70	0	70	n	0.00	0	70	0	70	n	0.00	0	87	0	87	n	ENSMUSG00000019951.11	Uhrf1bp1l	chr10	protein_coding	UHRF1 (ICBP90) binding protein 1-like
known_NIR_2080	chr10	90929118	90931646	+	90929118	90937617	A3SS	ENSMUST00000020150.10	known	0.00	0	5	0	5	n	0.11	1	8	1	8	n	0.33	8	16	8	16	y	0.00	0	9	0	9	n	1.00	2	0	2	0	n	0.40	4	6	4	6	y	0.21	3	11	3	11	y	0.12	1	7	1	7	n	0.00	0	3	0	3	n	0.45	5	6	5	6	y	0.33	2	4	2	4	n	0.50	1	1	1	1	n	ENSMUSG00000019975.13	Ikbip	chr10	protein_coding	IKBKB interacting protein
known_NIR_2081	chr10	90955568	90956487	-	90955568	90957784	A5SS	ENSMUST00000076694.13	known	0.00	1	863	1	863	n	0.00	1	753	1	753	n	0.00	4	1380	4	1380	y	0.00	0	1194	0	1194	n	0.00	0	1158	0	1158	n	0.00	1	656	1	656	n	0.00	1	1093	1	1093	n	0.00	2	678	2	678	y	0.00	0	865	0	865	n	0.00	2	1457	2	1457	y	0.00	0	958	0	958	n	0.00	0	1431	0	1431	n	ENSMUSG00000061904.13	Slc25a3	chr10	protein_coding	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3
known_NIR_2082	chr10	90955568	90958069	-	90955568	90957784	A5SS	ENSMUST00000171960.2	known	0.00	0	863	0	863	n	0.01	6	753	6	753	y	0.00	3	1380	3	1380	y	0.00	0	1194	0	1194	n	0.00	4	1158	4	1158	y	0.00	0	656	0	656	n	0.11	131	1093	131	1093	y	0.00	0	678	0	678	n	0.00	0	865	0	865	n	0.00	4	1457	4	1457	y	0.00	1	958	1	958	n	0.00	3	1431	3	1431	y	ENSMUSG00000061904.13	Slc25a3	chr10	protein_coding	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3
known_NIR_2083	chr10	90955568;90958193	90958069;90959420	-	90955568;90957905	90957784;90959420	MXE	ENSMUST00000076694.13	known	0.01	6.5	706.5	0;13	863;550	n	0.01	7.5	622.0	6;9	753;491	y	0.01	8.5	1143.0	3;14	1380;906	y	0.01	5.5	976.5	0;11	1194;759	n	0.01	6.5	979.5	4;9	1158;801	y	0.01	5.0	571.5	0;10	656;487	n	0.12	127.0	898.5	131;123	1093;704	y	0.00	2.0	574.0	0;4	678;470	n	0.01	5.0	721.5	0;10	865;578	n	0.01	9.5	1179.5	4;15	1457;902	y	0.01	5.0	810.0	1;9	958;662	n	0.01	7.0	1212.5	3;11	1431;994	y	ENSMUSG00000061904.13	Slc25a3	chr10	protein_coding	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3
known_NIR_2084	chr10	90989042	90994610	-	90987659	90994610	A3SS	ENSMUST00000105293.11	known	0.42	5	7	5	7	y	0.31	4	9	4	9	y	0.00	0	6	0	6	n	0.72	13	5	13	5	y	0.43	9	12	9	12	y	0.67	4	2	4	2	n	0.52	11	10	11	10	y	0.29	2	5	2	5	n	0.71	12	5	12	5	y	0.59	10	7	10	7	y	0.50	10	10	10	10	y	0.56	15	12	15	12	y	ENSMUSG00000019961.18	Tmpo	chr10	protein_coding	thymopoietin
known_NIR_2085	chr10	90989042	90994610	-	90989042	90989140	5pMXE	ENSMUST00000213262.2	known	0.24	5	16	5	16	y	0.17	4	19	4	19	y	0.00	0	46	0	46	n	0.25	13	40	13	40	y	0.19	9	38	9	38	y	0.17	4	19	4	19	y	0.23	11	36	11	36	y	0.07	2	27	2	27	y	0.28	12	31	12	31	y	0.20	10	39	10	39	y	0.24	10	32	10	32	y	0.27	15	41	15	41	y	ENSMUSG00000019961.18	Tmpo	chr10	protein_coding	thymopoietin
known_NIR_2086	chr10	90989042	90994610	-	90989042;90989259	90989140;90994610	ES	ENSMUST00000072239.14	known	0.20	5	19.5	5	16;23	y	0.15	4	22.5	4	19;26	y	0.00	0	48.0	0	46;50	n	0.23	13	43.0	13	40;46	y	0.18	9	42.0	9	38;46	y	0.17	4	20.0	4	19;21	y	0.25	11	33.5	11	36;31	y	0.07	2	27.5	2	27;28	y	0.30	12	28.5	12	31;26	y	0.23	10	34.0	10	39;29	y	0.24	10	32.5	10	32;33	y	0.27	15	41.5	15	41;42	y	ENSMUSG00000019961.18	Tmpo	chr10	protein_coding	thymopoietin
known_NIR_2087	chr10	90989259	90994610	-	90987659	90994610	A3SS	ENSMUST00000105293.11	known	0.77	23	7	23	7	y	0.74	26	9	26	9	y	0.89	50	6	50	6	y	0.90	46	5	46	5	y	0.79	46	12	46	12	y	0.91	21	2	21	2	y	0.76	31	10	31	10	y	0.85	28	5	28	5	y	0.84	26	5	26	5	y	0.81	29	7	29	7	y	0.77	33	10	33	10	y	0.78	42	12	42	12	y	ENSMUSG00000019961.18	Tmpo	chr10	protein_coding	thymopoietin
known_NIR_2088	chr10	90999223	90999905	-	90994707	90999905	A3SS	ENSMUST00000072239.14	known	0.16	7	36	7	36	y	0.26	9	26	9	26	y	0.33	21	42	21	42	y	0.15	10	56	10	56	y	0.20	17	66	17	66	y	0.22	6	21	6	21	y	0.19	9	39	9	39	y	0.24	8	26	8	26	y	0.24	11	35	11	35	y	0.21	15	58	15	58	y	0.33	16	32	16	32	y	0.17	11	53	11	53	y	ENSMUSG00000019961.18	Tmpo	chr10	protein_coding	thymopoietin
known_NIR_2089	chr10	91001931	91016729	-	91001931	91006900	5pMXE	ENSMUST00000072239.14	known	0.00	0	23	0	23	n	0.00	0	24	0	24	n	0.00	0	28	0	28	n	0.04	2	47	2	47	y	0.00	0	38	0	38	n	0.00	0	36	0	36	n	0.00	0	18	0	18	n	0.00	0	23	0	23	n	0.02	1	49	1	49	n	0.00	0	49	0	49	n	0.00	0	30	0	30	n	0.04	2	49	2	49	y	ENSMUSG00000019961.18	Tmpo	chr10	protein_coding	thymopoietin
known_NIR_2090	chr10	92550052	92555329	-	92550052	92552028	A5SS&ES	ENSMUST00000020163.7	known	0.09	2	21	2	21	y	0.00	0	12	0	12	n	0.00	0	24	0	24	n	0.00	0	24	0	24	n	0.09	2	20	2	20	y	0.00	0	9	0	9	n	0.04	1	25	1	25	n	0.00	0	17	0	17	n	0.00	0	13	0	13	n	0.00	0	25	0	25	n	0.00	0	7	0	7	n	0.04	1	25	1	25	n	ENSMUSG00000019988.8	Nedd1	chr10	protein_coding	neural precursor cell expressed, developmentally down-regulated gene 1
known_NIR_2091	chr10	93090673	93100742	-	93090673	93120631	A5SS	ENSMUST00000151153.2	known	1.00	6	0	6	0	n	1.00	4	0	4	0	n	0.69	9	4	9	4	y	1.00	9	0	9	0	n	1.00	13	0	13	0	n	1.00	8	0	8	0	n	1.00	11	0	11	0	n	1.00	13	0	13	0	n	1.00	6	0	6	0	n	0.88	7	1	7	1	n	1.00	10	0	10	0	n	1.00	9	0	9	0	n	ENSMUSG00000008398.17	Elk3	chr10	protein_coding	ELK3, member of ETS oncogene family
known_NIR_2092	chr10	93090673	93120631	-	93090673;93101542	93100742;93120631	ES	ENSMUST00000008542.12	known	0.00	0	8.0	0	6;10	n	0.00	0	4.0	0	4;4	n	0.29	4	10.0	4	9;11	y	0.00	0	8.5	0	9;8	n	0.00	0	12.5	0	13;12	n	0.00	0	8.0	0	8;8	n	0.00	0	9.5	0	11;8	n	0.00	0	8.5	0	13;4	n	0.00	0	3.5	0	6;1	n	0.11	1	8.0	1	7;9	n	0.00	0	7.5	0	10;5	n	0.00	0	8.0	0	9;7	n	ENSMUSG00000008398.17	Elk3	chr10	protein_coding	ELK3, member of ETS oncogene family
known_NIR_2093	chr10	93101542	93120631	-	93090673	93120631	A3SS	ENSMUST00000151153.2	known	1.00	10	0	10	0	n	1.00	4	0	4	0	n	0.73	11	4	11	4	y	1.00	8	0	8	0	n	1.00	12	0	12	0	n	1.00	8	0	8	0	n	1.00	8	0	8	0	n	1.00	4	0	4	0	n	1.00	1	0	1	0	n	0.90	9	1	9	1	n	1.00	5	0	5	0	n	1.00	7	0	7	0	n	ENSMUSG00000008398.17	Elk3	chr10	protein_coding	ELK3, member of ETS oncogene family
known_NIR_2094	chr10	93316648	93318824	+	93316648;93318194	93318112;93318824	ES	ENSMUST00000016033.9	known	0.05	6	109.0	6	98;120	y	0.05	6	118.0	6	115;121	y	0.03	3	88.0	3	78;98	y	0.08	7	82.5	7	83;82	y	0.04	6	141.0	6	129;153	y	0.00	0	53.0	0	48;58	n	0.09	13	133.0	13	126;140	y	0.10	6	54.5	6	55;54	y	0.06	6	96.0	6	91;101	y	0.03	3	116.5	3	108;125	y	0.02	2	116.5	2	98;135	y	0.03	3	102.0	3	101;103	y	ENSMUSG00000015889.9	Lta4h	chr10	protein_coding	leukotriene A4 hydrolase
known_NIR_2095	chr10	93339172	93339266	+	93339189	93339266	A5SS	ENSMUST00000129421.8	known	0.00	0	1355	0	1355	n	0.00	0	1110	0	1110	n	0.00	0	326	0	326	n	0.00	0	1238	0	1238	n	0.00	0	1250	0	1250	n	0.00	0	276	0	276	n	0.00	0	1242	0	1242	n	0.00	2	552	2	552	y	0.00	0	1184	0	1184	n	0.00	0	1290	0	1290	n	0.00	0	1325	0	1325	n	0.00	0	1932	0	1932	n	ENSMUSG00000020017.15	Hal	chr10	protein_coding	histidine ammonia lyase
known_NIR_2096	chr10	93715435	93715935	-	93715504	93715935	A3SS	ENSMUST00000047910.15	known	0.00	0	87	0	87	n	0.00	0	84	0	84	n	0.01	1	150	1	150	n	0.00	0	144	0	144	n	0.02	3	120	3	120	y	0.02	1	59	1	59	n	0.01	1	119	1	119	n	0.00	0	71	0	71	n	0.00	0	90	0	90	n	0.02	2	131	2	131	y	0.04	4	107	4	107	y	0.02	3	137	3	137	y	ENSMUSG00000036112.16	Metap2	chr10	protein_coding	methionine aminopeptidase 2
known_NIR_2097	chr10	93722960	93725400	-	93722963	93725400	A3SS	ENSMUST00000047910.15	known	0.10	9	82	9	82	y	0.10	9	77	9	77	y	0.10	18	157	18	157	y	0.07	9	122	9	122	y	0.13	20	138	20	138	y	0.18	12	56	12	56	y	0.14	21	133	21	133	y	0.08	7	76	7	76	y	0.12	13	91	13	91	y	0.11	18	146	18	146	y	0.10	11	104	11	104	y	0.15	26	146	26	146	y	ENSMUSG00000036112.16	Metap2	chr10	protein_coding	methionine aminopeptidase 2
known_NIR_2098	chr10	93826145	93829379	-	93826149	93829379	A3SS	ENSMUST00000119818.8	known	0.00	0	35	0	35	n	0.05	1	19	1	19	n	0.00	0	49	0	49	n	0.00	0	30	0	30	n	0.00	0	34	0	34	n	0.10	2	18	2	18	y	0.00	0	48	0	48	n	0.00	0	16	0	16	n	0.00	0	31	0	31	n	0.04	2	49	2	49	y	0.00	0	27	0	27	n	0.00	0	49	0	49	n	ENSMUSG00000036099.17	Vezt	chr10	protein_coding	vezatin, adherens junctions transmembrane protein
known_NIR_2099	chr10	93829516	93832700	-	93829528	93832700	A3SS	ENSMUST00000119818.8	known	0.48	14	15	14	15	y	0.67	6	3	6	3	n	0.51	21	20	21	20	y	0.62	18	11	18	11	y	0.46	13	15	13	15	y	0.78	7	2	7	2	n	0.55	24	20	24	20	y	0.50	4	4	4	4	n	0.48	10	11	10	11	y	0.71	24	10	24	10	y	0.26	6	17	6	17	y	0.60	18	12	18	12	y	ENSMUSG00000036099.17	Vezt	chr10	protein_coding	vezatin, adherens junctions transmembrane protein
known_NIR_2100	chr10	93830874	93832700	-	93829516	93832700	A3SS	ENSMUST00000047711.13	known	0.07	1	14	1	14	n	0.00	0	6	0	6	n	0.09	2	21	2	21	y	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.22	2	7	2	7	n	0.20	6	24	6	24	y	0.00	0	4	0	4	n	0.17	2	10	2	10	y	0.00	0	24	0	24	n	0.14	1	6	1	6	n	0.00	0	18	0	18	n	ENSMUSG00000036099.17	Vezt	chr10	protein_coding	vezatin, adherens junctions transmembrane protein
known_NIR_2101	chr10	93908483	93910045	+	93881495	93910045	A5SS	ENSMUST00000020208.5	known	0.27	3	8	3	8	y	0.00	0	10	0	10	n	0.14	5	32	5	32	y	0.12	4	29	4	29	y	0.17	2	10	2	10	y	0.00	0	20	0	20	n	0.00	0	26	0	26	n	0.08	2	24	2	24	y	0.25	2	6	2	6	n	0.24	10	32	10	32	y	0.14	3	18	3	18	y	0.28	8	21	8	21	y	ENSMUSG00000020021.5	Fgd6	chr10	protein_coding	FYVE, RhoGEF and PH domain containing 6
known_NIR_2102	chr10	94039237	94056543	+	94039237;94051261	94051201;94056543	ES	ENSMUST00000135292.3	known	0.99	423	3.0	423	3;3	y	1.00	393	1.5	393	1;2	n	1.00	331	0.0	331	0;0	n	0.99	326	3.0	326	3;3	y	1.00	485	1.5	485	1;2	n	0.99	213	1.5	213	1;2	n	0.99	459	2.5	459	2;3	y	1.00	163	0.5	163	0;1	n	0.99	373	2.0	373	1;3	n	1.00	539	2.5	539	3;2	y	1.00	439	1.0	439	2;0	n	1.00	472	0.5	472	0;1	n	ENSMUSG00000020022.18	Ndufa12	chr10	protein_coding	NADH:ubiquinone oxidoreductase subunit A12
known_NIR_2103	chr10	94412314	94414285	+	94350966	94414285	A5SS	ENSMUST00000065060.12	known	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.15	2	11	2	11	y	0.50	1	1	1	1	n	0.00	0	9	0	9	n	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000020023.19	Tmcc3	chr10	protein_coding	transmembrane and coiled coil domains 3
known_NIR_2104	chr10	94555604	94556542	+	94555604	94561509	A3SS	ENSMUST00000020212.6	known	0.50	4	4	4	4	n	0.17	1	5	1	5	n	0.12	3	23	3	23	y	0.00	0	9	0	9	n	0.00	0	20	0	20	n	0.54	7	6	7	6	y	0.13	2	13	2	13	y	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.11	1	8	1	8	n	0.12	1	7	1	7	n	0.00	0	17	0	17	n	ENSMUSG00000020024.8	Cep83	chr10	protein_coding	centrosomal protein 83
known_NIR_2105	chr10	95147086	95158448	-	95011840	95158448	A3SS	ENSMUST00000220279.2	known	0.00	0	44	0	44	n	0.05	3	61	3	61	y	0.06	2	29	2	29	y	0.04	3	68	3	68	y	0.03	2	65	2	65	y	0.13	4	27	4	27	y	0.03	2	66	2	66	y	0.02	1	45	1	45	n	0.05	2	42	2	42	y	0.02	2	85	2	85	y	0.03	2	61	2	61	y	0.09	7	69	7	69	y	ENSMUSG00000045867.11	Cradd	chr10	protein_coding	CASP2 and RIPK1 domain containing adaptor with death domain
known_NIR_2106	chr10	95158751	95159331	-	95158751	95159847	A5SS	ENSMUST00000053594.7	known	0.62	8	5	8	5	y	0.76	13	4	13	4	y	0.86	19	3	19	3	y	0.75	9	3	9	3	y	0.69	18	8	18	8	y	0.50	3	3	3	3	n	0.79	23	6	23	6	y	0.47	8	9	8	9	y	1.00	14	0	14	0	n	0.44	7	9	7	9	y	0.66	19	10	19	10	y	0.68	23	11	23	11	y	ENSMUSG00000045867.11	Cradd	chr10	protein_coding	CASP2 and RIPK1 domain containing adaptor with death domain
known_NIR_2107	chr10	95158751	95159863	-	95158751	95159331	5pMXE	ENSMUST00000217809.2	known	0.11	1	8	1	8	n	0.19	3	13	3	13	y	0.00	0	19	0	19	n	0.47	8	9	8	9	y	0.40	12	18	12	18	y	0.50	3	3	3	3	n	0.26	8	23	8	23	y	0.47	7	8	7	8	y	0.18	3	14	3	14	y	0.36	4	7	4	7	y	0.27	7	19	7	19	y	0.21	6	23	6	23	y	ENSMUSG00000045867.11	Cradd	chr10	protein_coding	CASP2 and RIPK1 domain containing adaptor with death domain
known_NIR_2108	chr10	95158751	95159863	-	95158751	95159847	A5SS	ENSMUST00000053594.7	known	0.17	1	5	1	5	n	0.43	3	4	3	4	n	0.00	0	3	0	3	n	0.73	8	3	8	3	y	0.60	12	8	12	8	y	0.50	3	3	3	3	n	0.57	8	6	8	6	y	0.44	7	9	7	9	y	1.00	3	0	3	0	n	0.31	4	9	4	9	y	0.41	7	10	7	10	y	0.35	6	11	6	11	y	ENSMUSG00000045867.11	Cradd	chr10	protein_coding	CASP2 and RIPK1 domain containing adaptor with death domain
known_NIR_2109	chr10	95251053	95251484	-	95251053	95252480	A5SS	ENSMUST00000020215.16	known	0.00	0	31	0	31	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.03	1	32	1	32	n	0.00	0	1	0	1	n	0.00	0	27	0	27	n	0.00	0	2	0	2	n	0.00	0	17	0	17	n	0.00	0	22	0	22	n	0.00	0	14	0	14	n	0.04	3	72	3	72	y	ENSMUSG00000020027.19	Socs2	chr10	protein_coding	suppressor of cytokine signaling 2
known_NIR_2110	chr10	95251053	95252480	-	95251053	95251862	5pMXE	ENSMUST00000170690.8	known	1.00	31	0	31	0	n	1.00	15	0	15	0	n	0.91	10	1	10	1	n	1.00	6	0	6	0	n	1.00	32	0	32	0	n	1.00	1	0	1	0	n	1.00	27	0	27	0	n	1.00	2	0	2	0	n	1.00	17	0	17	0	n	0.96	22	1	22	1	n	0.82	14	3	14	3	y	0.95	72	4	72	4	y	ENSMUSG00000020027.19	Socs2	chr10	protein_coding	suppressor of cytokine signaling 2
known_NIR_2111	chr10	95316839	95329493	-	95316839;95326274	95326108;95329493	ES	ENSMUST00000075829.3	known	0.01	2	295.5	2	279;312	y	0.02	7	343.0	7	338;348	y	0.01	3	235.0	3	224;246	y	0.00	1	283.5	1	263;304	n	0.02	7	341.5	7	321;362	y	0.02	3	171.0	3	156;186	y	0.02	7	389.0	7	382;396	y	0.01	2	159.0	2	155;163	y	0.02	5	254.5	5	241;268	y	0.01	5	390.0	5	371;409	y	0.02	6	374.5	6	366;383	y	0.01	5	358.0	5	363;353	y	ENSMUSG00000062981.6	Mrpl42	chr10	protein_coding	mitochondrial ribosomal protein L42
known_NIR_2112	chr10	95316839;95326443	95326108;95329493	-	95316839	95329493	cassetteExon	ENSMUST00000217777.2	known	0.99	140.0	2	279;1	2	n	0.96	169.5	7	338;1	7	n	0.97	113.0	3	224;2	3	y	0.99	131.5	1	263;0	1	n	0.96	160.5	7	321;0	7	n	0.96	78.0	3	156;0	3	n	0.96	191.5	7	382;1	7	n	0.97	77.5	2	155;0	2	n	0.96	122.5	5	241;4	5	y	0.97	185.5	5	371;0	5	n	0.97	183.5	6	366;1	6	n	0.97	183.5	5	363;4	5	y	ENSMUSG00000062981.6	Mrpl42	chr10	protein_coding	mitochondrial ribosomal protein L42
known_NIR_2113	chr10	95326274	95329493	-	95326274;95326443	95326397;95329493	ES	ENSMUST00000219019.2	known	0.99	312	3.0	312	5;1	n	1.00	348	0.5	348	0;1	n	0.98	246	4.0	246	6;2	y	1.00	304	0.0	304	0;0	n	1.00	362	1.5	362	3;0	n	0.99	186	1.0	186	2;0	n	1.00	396	1.0	396	1;1	n	0.99	163	1.0	163	2;0	n	0.98	268	4.5	268	5;4	y	1.00	409	1.0	409	2;0	n	0.99	383	4.0	383	7;1	n	0.99	353	4.5	353	5;4	y	ENSMUSG00000062981.6	Mrpl42	chr10	protein_coding	mitochondrial ribosomal protein L42
known_NIR_2114	chr10	95336384	95337768	-	95336384	95337752	A5SS	ENSMUST00000075829.3	known	0.98	113	2	113	2	y	1.00	108	0	108	0	n	1.00	89	0	89	0	n	0.99	138	1	138	1	n	1.00	161	0	161	0	n	1.00	74	0	74	0	n	1.00	176	0	176	0	n	1.00	64	0	64	0	n	1.00	108	0	108	0	n	0.99	148	1	148	1	n	1.00	136	0	136	0	n	1.00	120	0	120	0	n	ENSMUSG00000062981.6	Mrpl42	chr10	protein_coding	mitochondrial ribosomal protein L42
known_NIR_2115	chr10	95351639	95377067	+	95351099	95377067	A5SS	ENSMUST00000099329.5	known	0.02	4	159	4	159	y	0.00	0	118	0	118	n	0.00	1	210	1	210	n	0.00	1	200	1	200	n	0.02	3	196	3	196	y	0.02	2	102	2	102	y	0.00	0	176	0	176	n	0.01	1	127	1	127	n	0.00	0	113	0	113	n	0.00	0	166	0	166	n	0.02	3	125	3	125	y	0.01	1	153	1	153	n	ENSMUSG00000074781.6	Ube2n	chr10	protein_coding	ubiquitin-conjugating enzyme E2N
known_NIR_2116	chr10	95377240	95377500	+	95377313	95377500	A5SS	ENSMUST00000099329.5	known	0.03	5	190	5	190	y	0.03	6	180	6	180	y	0.01	2	233	2	233	y	0.03	5	182	5	182	y	0.02	6	237	6	237	y	0.00	0	119	0	119	n	0.01	2	226	2	226	y	0.00	0	128	0	128	n	0.01	2	144	2	144	y	0.02	4	184	4	184	y	0.03	7	194	7	194	y	0.01	2	190	2	190	y	ENSMUSG00000074781.6	Ube2n	chr10	protein_coding	ubiquitin-conjugating enzyme E2N
known_NIR_2117	chr10	95377313	95378134	+	95377313	95377500	3pMXE	ENSMUST00000220428.2	known	0.00	0	190	0	190	n	0.01	1	180	1	180	n	0.01	3	233	3	233	y	0.01	1	182	1	182	n	0.00	0	237	0	237	n	0.00	0	119	0	119	n	0.00	1	226	1	226	n	0.00	0	128	0	128	n	0.00	0	144	0	144	n	0.00	0	184	0	184	n	0.01	1	194	1	194	n	0.01	2	190	2	190	y	ENSMUSG00000074781.6	Ube2n	chr10	protein_coding	ubiquitin-conjugating enzyme E2N
known_NIR_2118	chr10	95377313	95378134	+	95377313;95377640	95377500;95378134	ES	ENSMUST00000099329.5	known	0.00	0	215.5	0	190;241	n	0.01	1	190.5	1	180;201	n	0.01	3	248.5	3	233;264	y	0.01	1	179.0	1	182;176	n	0.00	0	254.0	0	237;271	n	0.00	0	128.5	0	119;138	n	0.00	1	236.5	1	226;247	n	0.00	0	130.5	0	128;133	n	0.00	0	170.0	0	144;196	n	0.00	0	214.0	0	184;244	n	0.01	1	199.0	1	194;204	n	0.01	2	212.0	2	190;234	y	ENSMUSG00000074781.6	Ube2n	chr10	protein_coding	ubiquitin-conjugating enzyme E2N
known_NIR_2119	chr10	95377313	95378134	+	95377640	95378134	A5SS&ES	ENSMUST00000220127.2	known	0.00	0	241	0	241	n	0.00	1	201	1	201	n	0.01	3	264	3	264	y	0.01	1	176	1	176	n	0.00	0	271	0	271	n	0.00	0	138	0	138	n	0.00	1	247	1	247	n	0.00	0	133	0	133	n	0.00	0	196	0	196	n	0.00	0	244	0	244	n	0.00	1	204	1	204	n	0.01	2	234	2	234	y	ENSMUSG00000074781.6	Ube2n	chr10	protein_coding	ubiquitin-conjugating enzyme E2N
known_NIR_2120	chr10	95614931	95616371	+	95609520	95616371	A5SS	ENSMUST00000187483.7	known	1.00	92	0	92	0	n	0.99	108	1	108	1	n	0.98	84	2	84	2	y	0.98	86	2	86	2	y	0.99	101	1	101	1	n	1.00	34	0	34	0	n	1.00	124	0	124	0	n	1.00	46	0	46	0	n	1.00	119	0	119	0	n	1.00	166	0	166	0	n	0.98	97	2	97	2	y	1.00	75	0	75	0	n	ENSMUSG00000101517.7	4732465J04Rik	chr10	lncRNA	RIKEN cDNA 4732465J04 gene
known_NIR_2121	chr10	95616488	95627546	+	95616488;95619845	95619590;95627546	ES	ENSMUST00000187483.7	known	0.70	26	11.0	26	0;22	n	0.68	36	17.0	36	0;34	n	0.64	23	13.0	23	6;20	y	0.64	30	17.0	30	4;30	y	0.58	27	19.5	27	10;29	y	0.65	16	8.5	16	3;14	y	0.68	52	24.5	52	12;37	y	0.79	30	8.0	30	4;12	y	0.72	25	9.5	25	0;19	n	0.64	41	23.5	41	7;40	y	0.70	46	19.5	46	6;33	y	0.64	34	19.5	34	0;39	n	ENSMUSG00000101517.7	4732465J04Rik	chr10	lncRNA	RIKEN cDNA 4732465J04 gene
known_NIR_2122	chr10	95661846	95678705	-	95661846	95663899	A5SS&ES	ENSMUST00000211096.2	known	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.22	2	7	2	7	n	0.14	4	24	4	24	y	-	-	-	-	-	-	0.22	2	7	2	7	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.10	1	9	1	9	n	0.00	0	7	0	7	n	0.05	1	18	1	18	n	ENSMUSG00000110353.2	Gm33543	chr10	protein_coding	predicted gene, 33543
known_NIR_2123	chr10	95809940	95825424	+	95809940;95814148	95814023;95825424	ES	ENSMUST00000218088.2	known	0.67	5	2.5	5	1;4	n	0.40	1	1.5	1	3;0	n	0.81	11	2.5	11	1;4	n	0.62	4	2.5	4	2;3	n	0.77	10	3.0	10	5;1	n	0.80	2	0.5	2	0;1	n	0.40	2	3.0	2	4;2	n	0.83	5	1.0	5	2;0	n	0.67	4	2.0	4	1;3	n	0.46	3	3.5	3	3;4	y	0.50	5	5.0	5	4;6	y	0.67	13	6.5	13	7;6	y	ENSMUSG00000036499.10	Eea1	chr10	protein_coding	early endosome antigen 1
known_NIR_2124	chr10	95826327	95829092	+	95826327	95829286	A3SS	ENSMUST00000218291.2	known	0.00	0	9	0	9	n	0.10	1	9	1	9	n	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.00	0	21	0	21	n	0.00	0	4	0	4	n	0.10	1	9	1	9	n	0.00	0	7	0	7	n	0.29	2	5	2	5	n	0.00	0	11	0	11	n	0.15	2	11	2	11	y	0.08	1	11	1	11	n	ENSMUSG00000036499.10	Eea1	chr10	protein_coding	early endosome antigen 1
known_NIR_2125	chr10	9645278	9646194	-	9645454	9646194	A3SS	ENSMUST00000038213.14	known	0.00	0	23	0	23	n	0.00	0	15	0	15	n	0.12	5	38	5	38	y	0.00	0	21	0	21	n	0.00	0	29	0	29	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.00	0	19	0	19	n	0.00	0	15	0	15	n	0.04	1	25	1	25	n	0.00	0	13	0	13	n	0.18	4	18	4	18	y	ENSMUSG00000019790.18	Stxbp5	chr10	protein_coding	syntaxin binding protein 5 (tomosyn)
known_NIR_2126	chr10	96453690	96454138	+	96453334	96454138	A5SS	ENSMUST00000038377.9	known	0.00	0	96	0	96	n	0.00	0	54	0	54	n	0.01	2	172	2	172	y	0.00	0	100	0	100	n	0.00	0	157	0	157	n	0.01	1	128	1	128	n	0.00	0	138	0	138	n	0.01	1	131	1	131	n	0.00	0	97	0	97	n	0.00	0	174	0	174	n	0.01	1	108	1	108	n	0.01	2	166	2	166	y	ENSMUSG00000036478.9	Btg1	chr10	protein_coding	BTG anti-proliferation factor 1
known_NIR_2127	chr10	9646433	9665107	-	9646433	9653765	5pMXE	ENSMUST00000136259.8	known	0.07	1	14	1	14	n	0.17	1	5	1	5	n	0.07	2	26	2	26	y	0.00	0	12	0	12	n	0.13	4	26	4	26	y	0.07	1	13	1	13	n	0.00	0	20	0	20	n	0.00	0	20	0	20	n	0.25	2	6	2	6	n	0.00	0	18	0	18	n	0.00	0	11	0	11	n	0.15	4	22	4	22	y	ENSMUSG00000019790.18	Stxbp5	chr10	protein_coding	syntaxin binding protein 5 (tomosyn)
known_NIR_2128	chr10	9646433	9665107	-	9646433;9653815	9653765;9665107	ES	ENSMUST00000141722.8	known	0.12	1	7.5	1	14;1	n	0.29	1	2.5	1	5;0	n	0.11	2	17.0	2	26;8	y	0.00	0	8.5	0	12;5	n	0.22	4	14.0	4	26;2	y	0.12	1	7.5	1	13;2	n	0.00	0	11.5	0	20;3	n	0.00	0	11.5	0	20;3	n	0.36	2	3.5	2	6;1	n	0.00	0	11.5	0	18;5	n	0.00	0	9.5	0	11;8	n	0.23	4	13.5	4	22;5	y	ENSMUSG00000019790.18	Stxbp5	chr10	protein_coding	syntaxin binding protein 5 (tomosyn)
known_NIR_2129	chr10	9653815;9660144	9659932;9665107	-	9653815	9665107	cassetteExon	ENSMUST00000141722.8	known	0.90	9.5	1	8;11	1	n	1.00	3.5	0	3;4	0	n	0.66	15.5	8	16;15	8	y	0.44	4.0	5	3;5	5	y	0.86	12.0	2	13;11	2	y	0.80	8.0	2	8;8	2	y	0.79	11.5	3	7;16	3	y	0.67	6.0	3	9;3	3	y	0.78	3.5	1	3;4	1	n	0.76	15.5	5	11;20	5	y	0.38	5.0	8	3;7	8	y	0.70	11.5	5	13;10	5	y	ENSMUSG00000019790.18	Stxbp5	chr10	protein_coding	syntaxin binding protein 5 (tomosyn)
known_NIR_2130	chr10	9660144	9665107	-	9646433	9665107	A3SS	ENSMUST00000125200.8	known	0.92	11	1	11	1	n	0.80	4	1	4	1	n	0.88	15	2	15	2	y	1.00	5	0	5	0	n	0.73	11	4	11	4	y	0.89	8	1	8	1	n	1.00	16	0	16	0	n	1.00	3	0	3	0	n	0.67	4	2	4	2	n	1.00	20	0	20	0	n	1.00	7	0	7	0	n	0.71	10	4	10	4	y	ENSMUSG00000019790.18	Stxbp5	chr10	protein_coding	syntaxin binding protein 5 (tomosyn)
known_NIR_2131	chr10	97318409	97319201	+	97315651	97319201	A5SS	ENSMUST00000105287.11	known	0.32	24	52	24	52	y	0.28	16	41	16	41	y	0.68	237	111	237	111	y	0.24	19	59	19	59	y	0.44	77	99	77	99	y	0.57	75	56	75	56	y	0.40	76	115	76	115	y	0.53	47	41	47	41	y	0.18	12	54	12	54	y	0.19	12	52	12	52	y	0.12	10	73	10	73	y	0.15	13	73	13	73	y	ENSMUSG00000019929.17	Dcn	chr10	protein_coding	decorin
known_NIR_2132	chr10	98751233	98804556	+	98750655	98804556	A5SS	ENSMUST00000219557.2	known	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.36	10	18	10	18	y	0.25	4	12	4	12	y	0.48	10	11	10	11	y	0.42	5	7	5	7	y	0.73	11	4	11	4	y	0.22	4	14	4	14	y	0.38	5	8	5	8	y	0.53	10	9	10	9	y	0.17	1	5	1	5	n	0.44	4	5	4	5	n	ENSMUSG00000019943.11	Atp2b1	chr10	protein_coding	ATPase, Ca++ transporting, plasma membrane 1
known_NIR_2133	chr10	98854759	98858670	+	98855226	98858670	5pMXE	ENSMUST00000218419.2	known	1.00	35	0	35	0	n	1.00	53	0	53	0	n	1.00	86	0	86	0	n	1.00	55	0	55	0	n	1.00	86	0	86	0	n	1.00	34	0	34	0	n	0.97	65	2	65	2	y	1.00	45	0	45	0	n	1.00	33	0	33	0	n	1.00	66	0	66	0	n	0.96	45	2	45	2	y	1.00	72	0	72	0	n	ENSMUSG00000019943.11	Atp2b1	chr10	protein_coding	ATPase, Ca++ transporting, plasma membrane 1
known_NIR_2134	chr10	98854759;98855226	98855140;98858670	+	98854759	98858670	cassetteExon	ENSMUST00000020107.8	known	0.00	0.0	35	0;0	35	n	0.00	0.0	53	0;0	53	n	0.00	0.0	86	0;0	86	n	0.00	0.0	55	0;0	55	n	0.00	0.0	86	0;0	86	n	0.00	0.0	34	0;0	34	n	0.03	2.0	65	2;2	65	y	0.00	0.0	45	0;0	45	n	0.00	0.0	33	0;0	33	n	0.00	0.0	66	0;0	66	n	0.02	1.0	45	0;2	45	n	0.00	0.0	72	0;0	72	n	ENSMUSG00000019943.11	Atp2b1	chr10	protein_coding	ATPase, Ca++ transporting, plasma membrane 1
known_NIR_2135	chr10	98992213	99028644	+	98992213;99000811	99000731;99028644	ES	ENSMUST00000020113.15	known	0.14	1	6.0	1	6;6	n	0.00	0	7.5	0	10;5	n	0.00	0	12.0	0	12;12	n	0.25	2	6.0	2	7;5	y	0.00	0	13.5	0	18;9	n	0.00	0	5.5	0	9;2	n	0.00	0	12.5	0	16;9	n	0.00	0	6.5	0	9;4	n	0.00	0	6.5	0	7;6	n	0.08	1	12.0	1	9;15	n	0.22	2	7.0	2	8;6	y	0.00	0	14.5	0	15;14	n	ENSMUSG00000019952.16	Poc1b	chr10	protein_coding	POC1 centriolar protein B
known_NIR_2136	chr11	100211331	100211492	+	100210986	100211492	A5SS	ENSMUST00000049385.14	known	0.00	8	2207	8	2207	y	0.00	10	2415	10	2415	y	0.00	6	2593	6	2593	y	0.00	3	2416	3	2416	y	0.00	7	2611	7	2611	y	0.00	5	1278	5	1278	y	0.00	7	3189	7	3189	y	0.00	5	1254	5	1254	y	0.00	4	1792	4	1792	y	0.00	5	2906	5	2906	y	0.00	10	2353	10	2353	y	0.00	3	2621	3	2621	y	ENSMUSG00000035530.14	Eif1	chr11	protein_coding	eukaryotic translation initiation factor 1
known_NIR_2137	chr11	100389588	100395029	-	100389588;100394015	100393986;100395029	ES	ENSMUST00000107389.8	known	0.67	88	43.5	88	44;43	y	0.74	58	20.0	58	19;21	y	0.57	57	43.0	57	39;47	y	0.68	96	45.0	96	43;47	y	0.73	137	51.5	137	55;48	y	0.71	61	24.5	61	22;27	y	0.73	89	32.5	89	33;32	y	0.70	63	27.5	63	24;31	y	0.76	95	30.0	95	31;29	y	0.72	141	54.5	141	55;54	y	0.72	102	40.0	102	40;40	y	0.75	190	62.5	190	58;67	y	ENSMUSG00000020917.18	Acly	chr11	protein_coding	ATP citrate lyase
known_NIR_2138	chr11	100469878	100482093	+	100469878	100471173	3pMXE	ENSMUST00000103120.5	known	0.00	0	33	0	33	n	0.00	0	17	0	17	n	0.00	0	29	0	29	n	0.00	0	29	0	29	n	0.05	2	37	2	37	y	0.00	0	25	0	25	n	0.05	2	37	2	37	y	0.00	0	14	0	14	n	0.08	2	24	2	24	y	0.00	0	43	0	43	n	0.03	1	30	1	30	n	0.03	1	29	1	29	n	ENSMUSG00000006782.17	Cnp	chr11	protein_coding	2',3'-cyclic nucleotide 3' phosphodiesterase
known_NIR_2139	chr11	100475881;100480604	100480505;100480724	-	100475881	100480724	cassetteExon	ENSMUST00000239499.2	known	0.05	6.0	108	4;8	108	y	0.06	6.5	106	7;6	106	y	0.03	6.0	182	5;7	182	y	0.04	4.5	101	1;8	101	n	0.06	7.5	127	9;6	127	y	0.01	1.0	69	2;0	69	n	0.07	13.0	161	14;12	161	y	0.06	5.0	78	4;6	78	y	0.07	7.0	87	6;8	87	y	0.02	4.0	176	2;6	176	y	0.03	4.0	131	5;3	131	y	0.04	6.5	175	7;6	175	y	ENSMUSG00000014195.17	Dnajc7	chr11	protein_coding	DnaJ heat shock protein family (Hsp40) member C7
known_NIR_2140	chr11	100488880	100489441	-	100487066	100489441	A3SS	ENSMUST00000239499.2	known	0.07	4	54	4	54	y	0.14	7	42	7	42	y	0.11	10	84	10	84	y	0.05	4	74	4	74	y	0.05	4	81	4	81	y	0.05	3	57	3	57	y	0.04	4	94	4	94	y	0.13	7	47	7	47	y	0.07	3	38	3	38	y	0.05	4	81	4	81	y	0.03	2	66	2	66	y	0.03	3	95	3	95	y	ENSMUSG00000014195.17	Dnajc7	chr11	protein_coding	DnaJ heat shock protein family (Hsp40) member C7
known_NIR_2141	chr11	100490135	100510354	-	100490135;100492642	100492554;100510354	ES	ENSMUST00000239499.2	known	0.01	1	71.0	1	83;59	n	0.04	2	52.0	2	57;47	y	0.00	0	87.0	0	91;83	n	0.00	0	90.0	0	104;76	n	0.00	0	88.5	0	106;71	n	0.00	0	41.0	0	45;37	n	0.01	1	76.0	1	88;64	n	0.00	0	56.5	0	55;58	n	0.00	0	60.5	0	61;60	n	0.00	0	85.5	0	95;76	n	0.00	0	64.5	0	57;72	n	0.00	0	82.0	0	82;82	n	ENSMUSG00000014195.17	Dnajc7	chr11	protein_coding	DnaJ heat shock protein family (Hsp40) member C7
known_NIR_2142	chr11	100514033	100515018	+	100513834	100515018	A5SS	ENSMUST00000017981.10	known	0.00	0	20	0	20	n	0.00	0	20	0	20	n	0.08	2	24	2	24	y	0.00	0	22	0	22	n	0.00	0	30	0	30	n	0.00	0	19	0	19	n	0.00	0	27	0	27	n	0.00	0	15	0	15	n	0.00	0	29	0	29	n	0.00	0	42	0	42	n	0.00	0	19	0	19	n	0.00	0	44	0	44	n	ENSMUSG00000017837.13	Nkiras2	chr11	protein_coding	NFKB inhibitor interacting Ras-like protein 2
known_NIR_2143	chr11	100587037	100588982	-	100587037;100587992	100587802;100588982	ES	ENSMUST00000017974.13	known	0.00	0	21.5	0	19;24	n	0.00	0	26.0	0	20;32	n	0.00	0	26.5	0	27;26	n	0.00	0	25.0	0	19;31	n	0.00	0	22.5	0	24;21	n	0.00	0	11.5	0	6;17	n	0.00	0	19.5	0	18;21	n	0.00	0	8.5	0	9;8	n	0.14	3	18.0	3	15;21	y	0.00	0	32.0	0	33;31	n	0.00	0	20.5	0	18;23	n	0.00	0	14.0	0	15;13	n	ENSMUSG00000017830.16	Dhx58	chr11	protein_coding	DEXH (Asp-Glu-X-His) box polypeptide 58
known_NIR_2144	chr11	100599811	100599902	-	100599808	100599902	A3SS	ENSMUST00000153526.8	known	0.26	10	28	10	28	y	0.41	15	22	15	22	y	0.29	12	29	12	29	y	0.28	11	28	11	28	y	0.25	15	45	15	45	y	0.00	0	14	0	14	n	0.26	11	32	11	32	y	0.58	14	10	14	10	y	0.21	6	22	6	22	y	0.24	10	31	10	31	y	0.27	11	30	11	30	y	0.27	8	22	8	22	y	ENSMUSG00000020918.15	Kat2a	chr11	protein_coding	K(lysine) acetyltransferase 2A
known_NIR_2145	chr11	100600315	100601271	-	100600315	100601076	A5SS	ENSMUST00000153526.8	known	0.82	46	10	46	10	y	0.89	31	4	31	4	y	0.80	32	8	32	8	y	0.98	45	1	45	1	n	0.92	47	4	47	4	y	0.94	29	2	29	2	y	0.78	38	11	38	11	y	0.79	15	4	15	4	y	0.89	34	4	34	4	y	0.94	32	2	32	2	y	0.90	43	5	43	5	y	0.97	32	1	32	1	n	ENSMUSG00000020918.15	Kat2a	chr11	protein_coding	K(lysine) acetyltransferase 2A
known_NIR_2146	chr11	100607731	100608668	-	100607677	100608668	A3SS	ENSMUST00000107364.8	known	0.00	0	308	0	308	n	0.02	6	329	6	329	y	0.01	5	377	5	377	y	0.01	2	306	2	306	y	0.00	2	401	2	401	y	0.01	3	226	3	226	y	0.02	7	405	7	405	y	0.02	3	185	3	185	y	0.00	0	243	0	243	n	0.00	2	402	2	402	y	0.01	4	379	4	379	y	0.02	7	327	7	327	y	ENSMUSG00000019173.12	Rab5c	chr11	protein_coding	RAB5C, member RAS oncogene family
known_NIR_2147	chr11	100610994;100612476	100612327;100628904	-	100610994	100628904	cassetteExon	ENSMUST00000107364.8	known	0.00	0.0	170	0;0	170	n	0.00	0.0	133	0;0	133	n	0.01	2.0	189	2;2	189	y	0.00	0.5	177	0;1	177	n	0.00	0.5	238	0;1	238	n	0.00	0.0	107	0;0	107	n	0.00	0.0	163	0;0	163	n	0.00	0.0	120	0;0	120	n	0.00	0.0	126	0;0	126	n	0.00	0.0	229	0;0	229	n	0.01	1.0	171	2;0	171	n	0.01	1.5	162	2;1	162	n	ENSMUSG00000019173.12	Rab5c	chr11	protein_coding	RAB5C, member RAS oncogene family
known_NIR_2148	chr11	100661176	100661681	-	100661176	100661705	A5SS	ENSMUST00000017891.14	known	0.12	2	15	2	15	y	0.00	0	10	0	10	n	0.00	0	30	0	30	n	0.00	0	34	0	34	n	0.00	0	46	0	46	n	0.00	0	17	0	17	n	0.00	0	32	0	32	n	0.00	0	20	0	20	n	0.00	0	12	0	12	n	0.00	0	32	0	32	n	0.00	0	17	0	17	n	0.00	0	24	0	24	n	ENSMUSG00000017747.14	Ghdc	chr11	protein_coding	GH3 domain containing
known_NIR_2149	chr11	100695824	100699222	-	100695852	100699222	A3SS	ENSMUST00000107358.9	known	0.09	3	30	3	30	y	0.00	0	25	0	25	n	0.02	1	40	1	40	n	0.06	4	64	4	64	y	0.07	3	42	3	42	y	0.14	3	18	3	18	y	0.03	1	35	1	35	n	0.14	6	38	6	38	y	0.06	2	34	2	34	y	0.07	4	54	4	54	y	0.04	1	26	1	26	n	0.13	5	34	5	34	y	ENSMUSG00000020919.12	Stat5b	chr11	protein_coding	signal transducer and activator of transcription 5B
known_NIR_2150	chr11	100699359	100741225	-	100699359	100712878	5pMXE	ENSMUST00000107358.9	known	0.69	9	4	9	4	y	0.78	14	4	14	4	y	0.48	15	16	15	16	y	0.76	32	10	32	10	y	0.80	32	8	32	8	y	0.68	13	6	13	6	y	0.91	29	3	29	3	y	0.70	14	6	14	6	y	0.76	16	5	16	5	y	0.81	30	7	30	7	y	0.74	25	9	25	9	y	0.77	23	7	23	7	y	ENSMUSG00000020919.12	Stat5b	chr11	protein_coding	signal transducer and activator of transcription 5B
known_NIR_2151	chr11	100772011	100772888	+	100772011;100772615	100772564;100772888	ES	ENSMUST00000004145.14	known	0.00	0	15.5	0	14;17	n	0.15	3	17.5	3	16;19	y	0.23	5	17.0	5	15;19	y	0.11	3	23.5	3	25;22	y	0.04	1	27.5	1	23;32	n	0.15	2	11.0	2	6;16	y	0.07	1	14.0	1	14;14	n	0.06	1	15.0	1	17;13	n	0.06	1	14.5	1	12;17	n	0.04	1	25.5	1	25;26	n	0.00	0	29.5	0	31;28	n	0.14	2	12.5	2	10;15	y	ENSMUSG00000004043.15	Stat5a	chr11	protein_coding	signal transducer and activator of transcription 5A
known_NIR_2152	chr11	100780416	100780712	-	100780366	100780712	A3SS	ENSMUST00000103114.8	known	0.89	217	28	217	28	y	0.90	246	26	246	26	y	0.89	547	65	547	65	y	0.87	332	50	332	50	y	0.88	447	60	447	60	y	0.93	276	21	276	21	y	0.89	370	45	370	45	y	0.86	245	41	245	41	y	0.89	224	28	224	28	y	0.89	352	45	352	45	y	0.85	176	32	176	32	y	0.88	387	54	387	54	y	ENSMUSG00000004040.17	Stat3	chr11	protein_coding	signal transducer and activator of transcription 3
known_NIR_2153	chr11	100780754	100783903	-	100780754	100783900	A5SS	ENSMUST00000103114.8	known	0.18	43	200	43	200	y	0.12	28	207	28	207	y	0.15	85	497	85	497	y	0.17	62	296	62	296	y	0.16	77	392	77	392	y	0.13	37	244	37	244	y	0.14	53	334	53	334	y	0.17	44	217	44	217	y	0.18	41	186	41	186	y	0.17	56	278	56	278	y	0.17	32	158	32	158	y	0.17	68	331	68	331	y	ENSMUSG00000004040.17	Stat3	chr11	protein_coding	signal transducer and activator of transcription 3
known_NIR_2154	chr11	100855328	100860816	-	100850151	100860816	A3SS	ENSMUST00000060792.6	known	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.16	5	26	5	26	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000004044.10	Cavin1	chr11	protein_coding	caveolae associated 1
known_NIR_2155	chr11	100912008	100917486	+	100912008	100917507	A3SS	ENSMUST00000154896.8	known	0.53	16	14	16	14	y	0.50	10	10	10	10	y	0.54	60	51	60	51	y	0.53	29	26	29	26	y	0.59	32	22	32	22	y	0.58	36	26	36	26	y	0.56	20	16	20	16	y	0.29	14	34	14	34	y	0.52	14	13	14	13	y	0.61	33	21	33	21	y	0.53	20	18	20	18	y	0.46	25	29	25	29	y	ENSMUSG00000019302.17	Atp6v0a1	chr11	protein_coding	ATPase, H+ transporting, lysosomal V0 subunit A1
known_NIR_2156	chr11	100939351;100940302	100940285;100945852	+	100939351	100945852	cassetteExon	ENSMUST00000103110.10	known	0.00	0.0	80	0;0	80	n	0.00	0.0	66	0;0	66	n	0.00	0.0	170	0;0	170	n	0.00	0.0	86	0;0	86	n	0.00	0.0	114	0;0	114	n	0.04	3.0	81	4;2	81	y	0.00	0.0	81	0;0	81	n	0.00	0.0	50	0;0	50	n	0.00	0.0	79	0;0	79	n	0.01	1.0	107	1;1	107	n	0.00	0.0	97	0;0	97	n	0.00	0.0	80	0;0	80	n	ENSMUSG00000019302.17	Atp6v0a1	chr11	protein_coding	ATPase, H+ transporting, lysosomal V0 subunit A1
known_NIR_2157	chr11	100962868	100964759	+	100962868	100963043	A3SS&ES	ENSMUST00000001802.10	known	0.00	0	50	0	50	n	0.00	0	29	0	29	n	0.00	0	32	0	32	n	0.00	0	79	0	79	n	0.00	0	69	0	69	n	0.00	0	26	0	26	n	0.00	0	69	0	69	n	0.04	2	43	2	43	y	0.00	0	58	0	58	n	0.00	0	83	0	83	n	0.00	0	55	0	55	n	0.00	0	73	0	73	n	ENSMUSG00000001751.10	Naglu	chr11	protein_coding	alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)
known_NIR_2158	chr11	100973516	100973825	+	100973516	100975142	A3SS	ENSMUST00000151056.8	known	0.96	100	4	100	4	y	0.91	89	9	89	9	y	0.96	70	3	70	3	y	0.97	176	5	176	5	y	0.98	172	3	172	3	y	1.00	73	0	73	0	n	0.96	167	7	167	7	y	0.98	88	2	88	2	y	0.96	124	5	124	5	y	0.99	193	2	193	2	y	0.97	144	5	144	5	y	0.97	162	5	162	5	y	ENSMUSG00000001755.13	Coasy	chr11	protein_coding	Coenzyme A synthase
known_NIR_2159	chr11	100973516	100975142	+	100973516;100974532	100973825;100975142	ES	ENSMUST00000001806.10	known	0.02	4	178.0	4	100;256	y	0.05	9	173.5	9	89;258	y	0.02	3	141.0	3	70;212	y	0.02	5	241.5	5	176;307	y	0.01	3	279.0	3	172;386	y	0.00	0	109.0	0	73;145	n	0.03	7	242.5	7	167;318	y	0.02	2	119.5	2	88;151	y	0.03	5	191.0	5	124;258	y	0.01	2	311.5	2	193;430	y	0.02	5	234.0	5	144;324	y	0.02	5	281.5	5	162;401	y	ENSMUSG00000001755.13	Coasy	chr11	protein_coding	Coenzyme A synthase
known_NIR_2160	chr11	100974532	100975142	+	100973516	100975142	A5SS	ENSMUST00000151056.8	known	0.98	256	4	256	4	y	0.97	258	9	258	9	y	0.99	212	3	212	3	y	0.98	307	5	307	5	y	0.99	386	3	386	3	y	1.00	145	0	145	0	n	0.98	318	7	318	7	y	0.99	151	2	151	2	y	0.98	258	5	258	5	y	1.00	430	2	430	2	y	0.98	324	5	324	5	y	0.99	401	5	401	5	y	ENSMUSG00000001755.13	Coasy	chr11	protein_coding	Coenzyme A synthase
known_NIR_2161	chr11	100978355	100978580	+	100978193	100978580	A5SS	ENSMUST00000107302.8	known	0.40	44	66	44	66	y	0.33	21	42	21	42	y	0.44	45	58	45	58	y	0.27	23	61	23	61	y	0.29	32	78	32	78	y	0.24	16	51	16	51	y	0.28	25	65	25	65	y	0.39	26	40	26	40	y	0.29	21	52	21	52	y	0.31	35	78	35	78	y	0.37	34	59	34	59	y	0.22	21	74	21	74	y	ENSMUSG00000017801.16	Mlx	chr11	protein_coding	MAX-like protein X
known_NIR_2162	chr11	100978616	100979424	+	100978616;100979151	100979062;100979424	ES	ENSMUST00000107302.8	known	0.07	9	118.0	9	121;115	y	0.09	8	76.5	8	66;87	y	0.28	37	93.5	37	89;98	y	0.08	9	102.0	9	95;109	y	0.13	18	117.0	18	118;116	y	0.23	17	57.0	17	59;55	y	0.11	14	115.0	14	107;123	y	0.09	7	74.0	7	77;71	y	0.07	7	88.0	7	79;97	y	0.09	13	137.0	13	123;151	y	0.14	16	100.5	16	93;108	y	0.14	22	130.0	22	111;149	y	ENSMUSG00000017801.16	Mlx	chr11	protein_coding	MAX-like protein X
known_NIR_2163	chr11	100989446	100990499	-	100989446;100989966	100989834;100990499	ES	ENSMUST00000107295.10	known	0.00	0	147.5	0	157;138	n	0.03	4	138.0	4	153;123	y	0.00	0	124.5	0	142;107	n	0.00	0	160.0	0	172;148	n	0.01	2	203.5	2	213;194	y	0.00	0	80.5	0	71;90	n	0.01	1	198.0	1	209;187	n	0.00	0	93.5	0	94;93	n	0.00	0	142.0	0	153;131	n	0.00	1	212.0	1	205;219	n	0.00	0	136.5	0	151;122	n	0.00	0	179.5	0	199;160	n	ENSMUSG00000017802.15	Retreg3	chr11	protein_coding	reticulophagy regulator family member 3
known_NIR_2164	chr11	100990581;100991032	100990915;100991748	-	100990581	100991748	cassetteExon	ENSMUST00000107295.10	known	0.02	3.0	195	2;4	195	y	0.00	0.0	149	0;0	149	n	0.00	0.0	165	0;0	165	n	0.00	0.5	244	1;0	244	n	0.01	1.5	278	0;3	278	n	0.01	1.0	128	2;0	128	n	0.00	1.0	240	2;0	240	n	0.01	1.0	125	2;0	125	n	0.00	1.0	204	0;2	204	n	0.00	0.0	312	0;0	312	n	0.00	0.0	192	0;0	192	n	0.00	0.0	217	0;0	217	n	ENSMUSG00000017802.15	Retreg3	chr11	protein_coding	reticulophagy regulator family member 3
known_NIR_2165	chr11	100992916;100993835	100993709;100994716	-	100992916	100994716	cassetteExon	ENSMUST00000107295.10	known	0.98	130.0	2	131;129	2	y	0.97	93.0	3	93;93	3	y	0.97	88.0	3	87;89	3	y	0.98	133.0	3	144;122	3	y	0.98	148.5	3	140;157	3	y	0.96	50.5	2	48;53	2	y	1.00	137.0	0	134;140	0	n	0.98	64.5	1	61;68	1	n	0.93	98.5	7	103;94	7	y	0.98	141.0	3	131;151	3	y	0.97	97.5	3	98;97	3	y	0.98	114.0	2	111;117	2	y	ENSMUSG00000017802.15	Retreg3	chr11	protein_coding	reticulophagy regulator family member 3
known_NIR_2166	chr11	101054523	101054839	-	101054523	101054864	A5SS	ENSMUST00000139200.8	known	1.00	16	0	16	0	n	0.88	23	3	23	3	y	0.58	11	8	11	8	y	1.00	16	0	16	0	n	0.86	18	3	18	3	y	1.00	3	0	3	0	n	0.88	15	2	15	2	y	1.00	7	0	7	0	n	0.92	12	1	12	1	n	0.74	26	9	26	9	y	0.97	30	1	30	1	n	0.86	19	3	19	3	y	ENSMUSG00000035172.16	Plekhh3	chr11	protein_coding	pleckstrin homology domain containing, family H (with MyTH4 domain) member 3
known_NIR_2167	chr11	101055617	101055877	-	101055617	101055886	A5SS	ENSMUST00000139200.8	known	0.42	5	7	5	7	y	0.75	15	5	15	5	y	0.50	10	10	10	10	y	0.46	6	7	6	7	y	0.67	18	9	18	9	y	0.20	1	4	1	4	n	0.48	10	11	10	11	y	0.43	3	4	3	4	n	0.29	5	12	5	12	y	0.78	14	4	14	4	y	0.30	7	16	7	16	y	0.37	7	12	7	12	y	ENSMUSG00000035172.16	Plekhh3	chr11	protein_coding	pleckstrin homology domain containing, family H (with MyTH4 domain) member 3
known_NIR_2168	chr11	101108194	101109480	-	101108189	101109480	A3SS	ENSMUST00000107284.8	known	0.17	1	5	1	5	n	0.33	1	2	1	2	n	0.29	5	12	5	12	y	0.00	0	18	0	18	n	0.00	0	16	0	16	n	0.00	0	12	0	12	n	0.09	1	10	1	10	n	0.00	0	8	0	8	n	0.57	4	3	4	3	n	0.27	4	11	4	11	y	0.18	2	9	2	9	y	0.00	0	20	0	20	n	ENSMUSG00000006920.15	Ezh1	chr11	protein_coding	enhancer of zeste 1 polycomb repressive complex 2 subunit
known_NIR_2169	chr11	101137970	101138229	+	101137970	101138412	A3SS	ENSMUST00000129680.8	known	0.00	0	38	0	38	n	0.00	0	31	0	31	n	0.00	0	37	0	37	n	0.05	1	19	1	19	n	0.06	2	29	2	29	y	0.00	0	16	0	16	n	0.04	2	50	2	50	y	0.00	0	18	0	18	n	0.00	0	10	0	10	n	0.00	0	25	0	25	n	0.03	1	34	1	34	n	0.05	2	35	2	35	y	ENSMUSG00000001240.14	Ramp2	chr11	protein_coding	receptor (calcitonin) activity modifying protein 2
known_NIR_2170	chr11	101145002	101145745	+	101145002	101145769	A3SS	ENSMUST00000128260.9	known	0.00	1	279	1	279	n	0.03	9	283	9	283	y	0.01	5	335	5	335	y	0.03	8	308	8	308	y	0.02	8	390	8	390	y	0.05	12	229	12	229	y	0.03	10	378	10	378	y	0.01	3	204	3	204	y	0.02	5	257	5	257	y	0.03	13	404	13	404	y	0.02	6	360	6	360	y	0.02	9	364	9	364	y	ENSMUSG00000001240.14	Ramp2	chr11	protein_coding	receptor (calcitonin) activity modifying protein 2
known_NIR_2171	chr11	101145822	101147704	+	101145822;101146923	101146835;101147704	ES	ENSMUST00000128260.9	known	0.00	1	271.0	1	261;281	n	0.00	0	297.0	0	281;313	n	0.01	2	312.0	2	303;321	y	0.00	0	291.5	0	305;278	n	0.01	3	390.5	3	377;404	y	0.01	3	218.0	3	224;212	y	0.00	0	374.5	0	378;371	n	0.00	0	195.0	0	194;196	n	0.00	1	280.0	1	262;298	n	0.00	0	418.5	0	415;422	n	0.02	8	331.0	8	327;335	y	0.01	5	338.5	5	341;336	y	ENSMUSG00000001240.14	Ramp2	chr11	protein_coding	receptor (calcitonin) activity modifying protein 2
known_NIR_2172	chr11	101147779	101148727	+	101147779	101149736	A3SS	ENSMUST00000128260.9	known	0.04	9	243	9	243	y	0.03	10	282	10	282	y	0.00	1	282	1	282	n	0.02	5	271	5	271	y	0.03	9	342	9	342	y	0.05	10	190	10	190	y	0.02	7	322	7	322	y	0.02	3	184	3	184	y	0.04	9	245	9	245	y	0.03	11	364	11	364	y	0.07	21	289	21	289	y	0.02	6	285	6	285	y	ENSMUSG00000001240.14	Ramp2	chr11	protein_coding	receptor (calcitonin) activity modifying protein 2
known_NIR_2173	chr11	101147779	101149596	+	101147779	101148727	3pMXE	ENSMUST00000007533.15	known	0.31	4	9	4	9	y	0.00	0	10	0	10	n	0.50	1	1	1	1	n	0.44	4	5	4	5	n	0.18	2	9	2	9	y	0.29	4	10	4	10	y	0.12	1	7	1	7	n	0.25	1	3	1	3	n	0.25	3	9	3	9	y	0.00	0	11	0	11	n	0.16	4	21	4	21	y	0.25	2	6	2	6	n	ENSMUSG00000078656.12	Vps25	chr11	protein_coding	vacuolar protein sorting 25
known_NIR_2174	chr11	101147779	101149596	+	101147779	101149736	A3SS	ENSMUST00000128260.9	known	0.02	4	243	4	243	y	0.00	0	282	0	282	n	0.00	1	282	1	282	n	0.01	4	271	4	271	y	0.01	2	342	2	342	y	0.02	4	190	4	190	y	0.00	1	322	1	322	n	0.01	1	184	1	184	n	0.01	3	245	3	245	y	0.00	0	364	0	364	n	0.01	4	289	4	289	y	0.01	2	285	2	285	y	ENSMUSG00000001240.14	Ramp2	chr11	protein_coding	receptor (calcitonin) activity modifying protein 2
known_NIR_2175	chr11	101184973	101185792	-	101184973	101185796	A5SS	ENSMUST00000130916.8	known	0.00	0	165	0	165	n	0.02	3	148	3	148	y	0.00	0	211	0	211	n	0.00	0	183	0	183	n	0.01	2	238	2	238	y	0.00	0	136	0	136	n	0.01	2	205	2	205	y	0.01	1	137	1	137	n	0.00	0	128	0	128	n	0.00	0	198	0	198	n	0.00	0	129	0	129	n	0.00	0	202	0	202	n	ENSMUSG00000035086.14	Becn1	chr11	protein_coding	beclin 1, autophagy related
known_NIR_2176	chr11	101186450	101187020	-	101186450	101187084	A5SS	ENSMUST00000130916.8	known	0.02	2	117	2	117	y	0.00	0	93	0	93	n	0.01	1	165	1	165	n	0.00	0	107	0	107	n	0.00	0	142	0	142	n	0.00	0	99	0	99	n	0.00	0	155	0	155	n	0.01	1	93	1	93	n	0.02	2	98	2	98	y	0.01	1	161	1	161	n	0.00	0	109	0	109	n	0.00	0	132	0	132	n	ENSMUSG00000035086.14	Becn1	chr11	protein_coding	beclin 1, autophagy related
known_NIR_2177	chr11	101187142	101192554	-	101187142;101189902	101189835;101192554	ES	ENSMUST00000130916.8	known	0.04	3	82.5	3	74;91	y	0.02	2	84.5	2	72;97	y	0.03	4	149.5	4	128;171	y	0.03	4	119.5	4	112;127	y	0.03	4	146.5	4	124;169	y	0.00	0	88.5	0	73;104	n	0.00	0	142.0	0	133;151	n	0.00	0	96.5	0	94;99	n	0.00	0	86.5	0	79;94	n	0.01	1	146.5	1	124;169	n	0.02	2	106.5	2	95;118	y	0.04	5	136.5	5	120;153	y	ENSMUSG00000035086.14	Becn1	chr11	protein_coding	beclin 1, autophagy related
known_NIR_2178	chr11	101187142	101192554	-	101189902	101192554	A3SS&ES	ENSMUST00000129863.2	known	0.03	3	91	3	91	y	0.02	2	97	2	97	y	0.02	4	171	4	171	y	0.03	4	127	4	127	y	0.02	4	169	4	169	y	0.00	0	104	0	104	n	0.00	0	151	0	151	n	0.00	0	99	0	99	n	0.00	0	94	0	94	n	0.01	1	169	1	169	n	0.02	2	118	2	118	y	0.03	5	153	5	153	y	ENSMUSG00000035086.14	Becn1	chr11	protein_coding	beclin 1, autophagy related
known_NIR_2179	chr11	101207314	101208007	+	101207314;101207921	101207847;101208007	ES	ENSMUST00000142640.8	known	0.98	87	2.0	87	0;4	n	1.00	52	0.0	52	0;0	n	0.97	136	3.5	136	0;7	n	0.96	114	4.5	114	3;6	y	0.98	122	2.5	122	0;5	n	0.98	54	1.0	54	1;1	n	0.94	77	4.5	77	3;6	y	0.98	69	1.5	69	3;0	n	0.98	67	1.5	67	1;2	n	1.00	114	0.0	114	0;0	n	0.95	98	5.5	98	3;8	y	0.99	110	1.0	110	0;2	n	ENSMUSG00000078652.10	Psme3	chr11	protein_coding	proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki)
known_NIR_2180	chr11	101207314	101208007	+	101207921	101208007	5pMXE	ENSMUST00000151385.2	known	0.96	87	4	87	4	y	1.00	52	0	52	0	n	0.95	136	7	136	7	y	0.95	114	6	114	6	y	0.96	122	5	122	5	y	0.98	54	1	54	1	n	0.93	77	6	77	6	y	1.00	69	0	69	0	n	0.97	67	2	67	2	y	1.00	114	0	114	0	n	0.92	98	8	98	8	y	0.98	110	2	110	2	y	ENSMUSG00000078652.10	Psme3	chr11	protein_coding	proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki)
known_NIR_2181	chr11	101210418	101210738	+	101210330	101210738	A5SS	ENSMUST00000142640.8	known	0.00	0	108	0	108	n	0.00	0	78	0	78	n	0.01	2	182	2	182	y	0.00	0	149	0	149	n	0.01	2	168	2	168	y	0.01	1	80	1	80	n	0.01	1	167	1	167	n	0.00	0	84	0	84	n	0.01	1	113	1	113	n	0.00	0	166	0	166	n	0.00	0	118	0	118	n	0.00	0	153	0	153	n	ENSMUSG00000078652.10	Psme3	chr11	protein_coding	proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki)
known_NIR_2182	chr11	101302050	101302120	-	101302025	101302120	A3SS	ENSMUST00000107257.8	known	0.02	2	86	2	86	y	0.07	5	68	5	68	y	0.03	2	74	2	74	y	0.05	6	111	6	111	y	0.03	3	101	3	101	y	0.02	1	41	1	41	n	0.00	0	109	0	109	n	0.02	1	41	1	41	n	0.00	0	58	0	58	n	0.01	1	103	1	103	n	0.01	1	101	1	101	n	0.01	1	96	1	96	n	ENSMUSG00000097239.8	Gm27029	chr11	protein_coding	predicted gene, 27029
known_NIR_2183	chr11	101334496;101334825	101334781;101336046	+	101334496	101336046	cassetteExon	ENSMUST00000077856.13	known	0.00	0.0	1652	0;0	1652	n	0.00	0.0	1822	0;0	1822	n	0.00	2.0	2179	2;2	2179	y	0.00	0.5	1404	0;1	1404	n	0.00	1.0	1964	1;1	1964	n	0.00	1.0	1096	0;2	1096	n	0.00	1.5	2019	2;1	2019	n	0.00	2.0	1007	2;2	1007	y	0.00	0.0	1402	0;0	1402	n	0.00	0.0	1946	0;0	1946	n	0.00	0.5	1920	1;0	1920	n	0.00	1.0	1897	2;0	1897	n	ENSMUSG00000063316.14	Rpl27	chr11	protein_coding	ribosomal protein L27
known_NIR_2184	chr11	101347490	101348242	+	101347490	101348016	A3SS	ENSMUST00000125958.2	known	0.03	4	118	4	118	y	0.04	5	132	5	132	y	0.00	0	113	0	113	n	0.03	3	103	3	103	y	0.02	3	149	3	149	y	0.00	0	41	0	41	n	0.00	0	120	0	120	n	0.00	0	39	0	39	n	0.00	0	93	0	93	n	0.02	3	136	3	136	y	0.01	1	105	1	105	n	0.01	1	92	1	92	n	ENSMUSG00000010358.14	Ifi35	chr11	protein_coding	interferon-induced protein 35
known_NIR_2185	chr11	101347490	101348242	+	101347490;101348163	101348016;101348242	ES	ENSMUST00000010502.13	known	0.03	4	145.0	4	118;172	y	0.04	5	123.5	5	132;115	y	0.00	0	131.5	0	113;150	n	0.03	3	115.5	3	103;128	y	0.02	3	159.0	3	149;169	y	0.00	0	47.5	0	41;54	n	0.00	0	130.0	0	120;140	n	0.00	0	36.5	0	39;34	n	0.00	0	86.0	0	93;79	n	0.02	3	131.5	3	136;127	y	0.01	1	115.0	1	105;125	n	0.01	1	100.5	1	92;109	n	ENSMUSG00000010358.14	Ifi35	chr11	protein_coding	interferon-induced protein 35
known_NIR_2186	chr11	101443781	101444814	+	101443411	101444814	A5SS	ENSMUST00000103099.8	known	0.99	81	1	81	1	n	1.00	48	0	48	0	n	0.98	151	3	151	3	y	0.98	158	4	158	4	y	0.98	204	5	204	5	y	0.98	123	2	123	2	y	0.99	138	2	138	2	y	1.00	118	0	118	0	n	0.98	100	2	100	2	y	0.97	157	5	157	5	y	1.00	100	0	100	0	n	0.99	149	1	149	1	n	ENSMUSG00000017119.21	Nbr1	chr11	protein_coding	NBR1, autophagy cargo receptor
known_NIR_2187	chr11	101443781	101446636	+	101443781	101444814	A3SS&ES	ENSMUST00000149170.2	known	0.00	0	81	0	81	n	0.00	0	48	0	48	n	0.01	1	151	1	151	n	0.00	0	158	0	158	n	0.00	0	204	0	204	n	0.01	1	123	1	123	n	0.00	0	138	0	138	n	0.01	1	118	1	118	n	0.02	2	100	2	100	y	0.00	0	157	0	157	n	0.00	0	100	0	100	n	0.00	0	149	0	149	n	ENSMUSG00000017119.21	Nbr1	chr11	protein_coding	NBR1, autophagy cargo receptor
known_NIR_2188	chr11	101443781	101446636	+	101443781;101444924	101444814;101446636	ES	ENSMUST00000103098.9	known	0.00	0	110.5	0	81;140	n	0.00	0	58.0	0	48;68	n	0.01	1	186.0	1	151;221	n	0.00	0	196.5	0	158;235	n	0.00	0	243.5	0	204;283	n	0.01	1	139.5	1	123;156	n	0.00	0	168.5	0	138;199	n	0.01	1	140.0	1	118;162	n	0.02	2	114.5	2	100;129	y	0.00	0	173.5	0	157;190	n	0.00	0	115.5	0	100;131	n	0.00	0	189.0	0	149;229	n	ENSMUSG00000017119.21	Nbr1	chr11	protein_coding	NBR1, autophagy cargo receptor
known_NIR_2189	chr11	101443781	101446636	+	101444924	101446636	A5SS&ES	ENSMUST00000103099.8	known	0.00	0	140	0	140	n	0.00	0	68	0	68	n	0.00	1	221	1	221	n	0.00	0	235	0	235	n	0.00	0	283	0	283	n	0.01	1	156	1	156	n	0.00	0	199	0	199	n	0.01	1	162	1	162	n	0.02	2	129	2	129	y	0.00	0	190	0	190	n	0.00	0	131	0	131	n	0.00	0	229	0	229	n	ENSMUSG00000017119.21	Nbr1	chr11	protein_coding	NBR1, autophagy cargo receptor
known_NIR_2190	chr11	101462803	101463634	+	101462803;101463398	101463288;101463634	ES	ENSMUST00000103099.8	known	0.17	34	163.5	34	170;157	y	0.19	29	121.5	29	122;121	y	0.24	64	207.5	64	228;187	y	0.22	57	205.0	57	219;191	y	0.23	74	251.5	74	268;235	y	0.23	39	134.0	39	142;126	y	0.18	49	223.0	49	225;221	y	0.22	39	140.0	39	159;121	y	0.21	40	155.0	40	156;154	y	0.27	70	186.0	70	212;160	y	0.18	31	141.5	31	158;125	y	0.20	48	196.0	48	190;202	y	ENSMUSG00000017119.21	Nbr1	chr11	protein_coding	NBR1, autophagy cargo receptor
known_NIR_2191	chr11	101462803	101463634	+	101463398	101463634	5pMXE	ENSMUST00000172744.2	known	0.18	34	157	34	157	y	0.19	29	121	29	121	y	0.25	64	187	64	187	y	0.23	57	191	57	191	y	0.24	74	235	74	235	y	0.24	39	126	39	126	y	0.18	49	221	49	221	y	0.24	39	121	39	121	y	0.21	40	154	40	154	y	0.30	70	160	70	160	y	0.20	31	125	31	125	y	0.19	48	202	48	202	y	ENSMUSG00000017119.21	Nbr1	chr11	protein_coding	NBR1, autophagy cargo receptor
known_NIR_2192	chr11	101467235	101468758	+	101467235;101468077	101468020;101468758	ES	ENSMUST00000103099.8	known	0.04	13	278.0	13	306;250	y	0.02	6	257.5	6	273;242	y	0.02	7	322.5	7	366;279	y	0.03	9	338.0	9	369;307	y	0.03	13	393.5	13	419;368	y	0.02	5	229.5	5	262;197	y	0.05	17	321.0	17	330;312	y	0.01	4	263.5	4	294;233	y	0.03	9	258.5	9	275;242	y	0.04	18	387.5	18	423;352	y	0.03	7	270.5	7	289;252	y	0.03	10	310.0	10	336;284	y	ENSMUSG00000017119.21	Nbr1	chr11	protein_coding	NBR1, autophagy cargo receptor
known_NIR_2193	chr11	101467235;101468077	101468020;101471411	+	101467235;101468863	101468758;101471411	MXE	ENSMUST00000123558.8	known	0.56	160.5	125.0	306;15	13;237	y	0.51	144.0	139.0	273;15	6;272	y	0.62	207.5	127.5	366;49	7;248	y	0.56	189.5	150.5	369;10	9;292	y	0.50	214.5	211.0	419;10	13;409	y	0.57	134.5	101.0	262;7	5;197	y	0.49	168.5	178.5	330;7	17;340	y	0.59	153.0	105.0	294;12	4;206	y	0.56	143.0	112.5	275;11	9;216	y	0.57	218.5	167.5	423;14	18;317	y	0.55	149.5	122.5	289;10	7;238	y	0.52	176.0	164.5	336;16	10;319	y	ENSMUSG00000017119.21	Nbr1	chr11	protein_coding	NBR1, autophagy cargo receptor
known_NIR_2194	chr11	101468077	101471411	+	101468077;101468863	101468758;101471411	ES	ENSMUST00000103099.8	known	0.06	15	243.5	15	250;237	y	0.06	15	257.0	15	242;272	y	0.16	49	263.5	49	279;248	y	0.03	10	299.5	10	307;292	y	0.03	10	388.5	10	368;409	y	0.03	7	197.0	7	197;197	y	0.02	7	326.0	7	312;340	y	0.05	12	219.5	12	233;206	y	0.05	11	229.0	11	242;216	y	0.04	14	334.5	14	352;317	y	0.04	10	245.0	10	252;238	y	0.05	16	301.5	16	284;319	y	ENSMUSG00000017119.21	Nbr1	chr11	protein_coding	NBR1, autophagy cargo receptor
known_NIR_2195	chr11	101468077	101471411	+	101468863	101471411	5pMXE	ENSMUST00000141170.2	known	0.06	15	237	15	237	y	0.05	15	272	15	272	y	0.16	49	248	49	248	y	0.03	10	292	10	292	y	0.02	10	409	10	409	y	0.03	7	197	7	197	y	0.02	7	340	7	340	y	0.06	12	206	12	206	y	0.05	11	216	11	216	y	0.04	14	317	14	317	y	0.04	10	238	10	238	y	0.05	16	319	16	319	y	ENSMUSG00000017119.21	Nbr1	chr11	protein_coding	NBR1, autophagy cargo receptor
known_NIR_2196	chr11	101518890	101519099	+	101518070	101519099	A5SS	ENSMUST00000152484.8	known	1.00	19	0	19	0	n	1.00	22	0	22	0	n	1.00	6	0	6	0	n	0.91	30	3	30	3	y	0.60	3	2	3	2	n	1.00	4	0	4	0	n	1.00	26	0	26	0	n	-	-	-	-	-	-	0.91	21	2	21	2	y	0.98	57	1	57	1	n	1.00	34	0	34	0	n	0.94	34	2	34	2	y	ENSMUSG00000010362.10	Rdm1	chr11	protein_coding	RAD52 motif 1
known_NIR_2197	chr11	101865765	101875438	-	101865765	101872443	5pMXE	ENSMUST00000125794.2	known	0.05	2	35	2	35	y	0.14	4	24	4	24	y	0.08	9	106	9	106	y	0.02	1	59	1	59	n	0.01	1	79	1	79	n	0.03	1	39	1	39	n	0.02	1	55	1	55	n	0.00	0	45	0	45	n	0.12	4	30	4	30	y	0.04	3	79	3	79	y	0.07	3	37	3	37	y	0.07	3	41	3	41	y	ENSMUSG00000003518.14	Dusp3	chr11	protein_coding	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)
known_NIR_2198	chr11	101865765	101875438	-	101865765;101872669	101872443;101875438	ES	ENSMUST00000003612.13	known	0.06	2	29.0	2	35;23	y	0.11	4	31.0	4	24;38	y	0.08	9	101.5	9	106;97	y	0.02	1	59.0	1	59;59	n	0.01	1	70.0	1	79;61	n	0.02	1	43.0	1	39;47	n	0.02	1	50.0	1	55;45	n	0.00	0	37.0	0	45;29	n	0.14	4	24.5	4	30;19	y	0.04	3	69.0	3	79;59	y	0.08	3	35.0	3	37;33	y	0.06	3	44.0	3	41;47	y	ENSMUSG00000003518.14	Dusp3	chr11	protein_coding	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)
known_NIR_2199	chr11	101871548	101872443	-	101865765	101872443	A3SS	ENSMUST00000151678.8	known	0.00	0	35	0	35	n	0.00	0	24	0	24	n	0.00	0	106	0	106	n	0.00	0	59	0	59	n	0.01	1	79	1	79	n	0.00	0	39	0	39	n	0.00	0	55	0	55	n	0.00	0	45	0	45	n	0.00	0	30	0	30	n	0.04	3	79	3	79	y	0.00	0	37	0	37	n	0.00	0	41	0	41	n	ENSMUSG00000003518.14	Dusp3	chr11	protein_coding	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)
known_NIR_2200	chr11	101934130	101937680	+	101934130	101937932	A3SS	ENSMUST00000017453.12	known	0.00	0	18	0	18	n	0.00	0	11	0	11	n	0.43	3	4	3	4	n	0.30	3	7	3	7	y	0.23	3	10	3	10	y	0.50	1	1	1	1	n	0.15	5	28	5	28	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.12	2	14	2	14	y	ENSMUSG00000017309.12	Cd300lg	chr11	protein_coding	CD300 molecule like family member G
known_NIR_2201	chr11	101934130	101937932	+	101934130	101936893	A3SS&ES	ENSMUST00000107164.3	known	0.82	18	4	18	4	y	0.92	11	1	11	1	n	0.80	4	1	4	1	n	1.00	7	0	7	0	n	0.83	10	2	10	2	y	1.00	1	0	1	0	n	0.93	28	2	28	2	y	1.00	3	0	3	0	n	0.75	3	1	3	1	n	1.00	14	0	14	0	n	0.81	13	3	13	3	y	0.88	14	2	14	2	y	ENSMUSG00000017309.12	Cd300lg	chr11	protein_coding	CD300 molecule like family member G
known_NIR_2202	chr11	101934130	101937932	+	101934130;101937024	101936893;101937932	ES	ENSMUST00000123895.8	known	0.84	18	3.5	18	4;3	y	0.92	11	1.0	11	1;1	n	0.89	4	0.5	4	1;0	n	1.00	7	0.0	7	0;0	n	0.87	10	1.5	10	2;1	n	1.00	1	0.0	1	0;0	n	0.97	28	1.0	28	2;0	n	1.00	3	0.0	3	0;0	n	0.75	3	1.0	3	1;1	n	0.88	14	2.0	14	0;4	n	0.90	13	1.5	13	3;0	n	0.93	14	1.0	14	2;0	n	ENSMUSG00000017309.12	Cd300lg	chr11	protein_coding	CD300 molecule like family member G
known_NIR_2203	chr11	101934130;101937024	101936893;101937680	+	101934130	101937680	cassetteExon	ENSMUST00000107163.9	known	1.00	2.0	0	4;0	0	n	1.00	1.0	0	1;1	0	n	0.14	0.5	3	1;0	3	n	0.25	1.0	3	0;2	3	n	0.54	3.5	3	2;5	3	y	0.00	0.0	1	0;0	1	n	0.29	2.0	5	2;2	5	n	-	-	-	-	-	-	1.00	0.5	0	1;0	0	n	-	-	-	-	-	-	1.00	1.5	0	3;0	0	n	0.33	1.0	2	2;0	2	n	ENSMUSG00000017309.12	Cd300lg	chr11	protein_coding	CD300 molecule like family member G
known_NIR_2204	chr11	102046730	102046970	-	102046730	102047034	A5SS	ENSMUST00000021296.7	known	0.29	2	5	2	5	n	0.29	4	10	4	10	y	0.00	0	11	0	11	n	0.11	1	8	1	8	n	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.07	1	13	1	13	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.08	1	12	1	12	n	0.00	0	13	0	13	n	ENSMUSG00000020921.7	Tmem101	chr11	protein_coding	transmembrane protein 101
known_NIR_2205	chr11	102086694	102086774	-	102086694	102086778	A5SS	ENSMUST00000107151.9	known	0.03	1	33	1	33	n	0.02	1	42	1	42	n	0.11	3	25	3	25	y	0.08	3	35	3	35	y	0.02	1	49	1	49	n	0.17	2	10	2	10	y	0.03	1	35	1	35	n	0.04	1	24	1	24	n	0.00	0	28	0	28	n	0.06	3	49	3	49	y	0.02	1	58	1	58	n	0.00	0	29	0	29	n	ENSMUSG00000008855.18	Hdac5	chr11	protein_coding	histone deacetylase 5
known_NIR_2206	chr11	102086720	102086778	-	102086694	102086778	A3SS	ENSMUST00000107151.9	known	0.03	1	33	1	33	n	0.00	0	42	0	42	n	0.00	0	25	0	25	n	0.00	0	35	0	35	n	0.00	0	49	0	49	n	0.00	0	10	0	10	n	0.00	0	35	0	35	n	0.00	0	24	0	24	n	0.10	3	28	3	28	y	0.00	0	49	0	49	n	0.05	3	58	3	58	y	0.00	0	29	0	29	n	ENSMUSG00000008855.18	Hdac5	chr11	protein_coding	histone deacetylase 5
known_NIR_2207	chr11	102097992;102104862	102104751;102109242	-	102097992	102109242	cassetteExon	ENSMUST00000107151.9	known	0.04	1.0	22	1;1	22	n	0.07	1.5	19	1;2	19	n	0.18	3.0	14	3;3	14	y	0.09	2.5	26	2;3	26	y	0.12	4.0	30	3;5	30	y	0.09	1.5	15	0;3	15	n	0.09	2.5	26	0;5	26	n	0.15	2.5	14	0;5	14	n	0.14	3.5	22	3;4	22	y	0.10	4.5	39	1;8	39	n	0.13	4.5	29	2;7	29	y	0.11	2.5	21	1;4	21	n	ENSMUSG00000008855.18	Hdac5	chr11	protein_coding	histone deacetylase 5
known_NIR_2208	chr11	102109313	102115560	-	102109316	102115560	A3SS	ENSMUST00000107151.9	known	0.57	4	3	4	3	n	0.50	4	4	4	4	n	0.55	6	5	6	5	y	0.84	16	3	16	3	y	0.83	15	3	15	3	y	0.50	5	5	5	5	y	0.55	12	10	12	10	y	0.62	8	5	8	5	y	0.57	12	9	12	9	y	0.58	15	11	15	11	y	0.56	10	8	10	8	y	0.64	16	9	16	9	y	ENSMUSG00000008855.18	Hdac5	chr11	protein_coding	histone deacetylase 5
known_NIR_2209	chr11	102109313	102115560	-	102109607	102115560	3pMXE	ENSMUST00000128686.8	known	1.00	4	0	4	0	n	1.00	4	0	4	0	n	1.00	6	0	6	0	n	0.89	16	2	16	2	y	0.88	15	2	15	2	y	1.00	5	0	5	0	n	0.86	12	2	12	2	y	1.00	8	0	8	0	n	1.00	12	0	12	0	n	0.94	15	1	15	1	n	1.00	10	0	10	0	n	1.00	16	0	16	0	n	ENSMUSG00000008855.18	Hdac5	chr11	protein_coding	histone deacetylase 5
known_NIR_2210	chr11	102109607	102115560	-	102109316	102115560	A3SS	ENSMUST00000107151.9	known	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.40	2	3	2	3	n	0.40	2	3	2	3	n	0.00	0	5	0	5	n	0.17	2	10	2	10	y	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.08	1	11	1	11	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	ENSMUSG00000008855.18	Hdac5	chr11	protein_coding	histone deacetylase 5
known_NIR_2211	chr11	102110107	102115560	-	102109313	102115560	A3SS	ENSMUST00000124077.8	known	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.00	0	16	0	16	n	0.12	2	15	2	15	y	0.38	3	5	3	5	n	0.14	2	12	2	12	y	0.00	0	8	0	8	n	0.14	2	12	2	12	y	0.00	0	15	0	15	n	0.38	6	10	6	10	y	0.00	0	16	0	16	n	ENSMUSG00000008855.18	Hdac5	chr11	protein_coding	histone deacetylase 5
known_NIR_2212	chr11	102110107	102115560	-	102109316	102115560	A3SS	ENSMUST00000107151.9	known	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.40	2	3	2	3	n	0.38	3	5	3	5	n	0.17	2	10	2	10	y	0.00	0	5	0	5	n	0.18	2	9	2	9	y	0.00	0	11	0	11	n	0.43	6	8	6	8	y	0.00	0	9	0	9	n	ENSMUSG00000008855.18	Hdac5	chr11	protein_coding	histone deacetylase 5
known_NIR_2213	chr11	102175914	102178134	+	102175914	102178406	A3SS	ENSMUST00000135551.2	known	1.00	12	0	12	0	n	1.00	10	0	10	0	n	1.00	36	0	36	0	n	0.86	18	3	18	3	y	1.00	22	0	22	0	n	1.00	14	0	14	0	n	0.85	22	4	22	4	y	0.95	18	1	18	1	n	1.00	12	0	12	0	n	0.89	17	2	17	2	y	1.00	23	0	23	0	n	1.00	14	0	14	0	n	ENSMUSG00000034757.16	Tmub2	chr11	protein_coding	transmembrane and ubiquitin-like domain containing 2
known_NIR_2214	chr11	102175914	102178134	+	102175914;102176544	102176490;102178134	ES	ENSMUST00000036376.13	known	0.19	12	50.0	12	51;49	y	0.16	10	53.5	10	62;45	y	0.43	36	47.0	36	40;54	y	0.33	18	36.5	18	37;36	y	0.24	22	69.5	22	73;66	y	0.36	14	25.0	14	23;27	y	0.29	22	53.0	22	51;55	y	0.35	18	33.5	18	33;34	y	0.21	12	44.0	12	45;43	y	0.21	17	64.0	17	61;67	y	0.40	23	34.0	23	32;36	y	0.22	14	51.0	14	53;49	y	ENSMUSG00000034757.16	Tmub2	chr11	protein_coding	transmembrane and ubiquitin-like domain containing 2
known_NIR_2215	chr11	102175914	102178134	+	102176544	102178134	5pMXE	ENSMUST00000156326.2	known	0.20	12	49	12	49	y	0.18	10	45	10	45	y	0.40	36	54	36	54	y	0.33	18	36	18	36	y	0.25	22	66	22	66	y	0.34	14	27	14	27	y	0.29	22	55	22	55	y	0.35	18	34	18	34	y	0.22	12	43	12	43	y	0.20	17	67	17	67	y	0.39	23	36	23	36	y	0.22	14	49	14	49	y	ENSMUSG00000034757.16	Tmub2	chr11	protein_coding	transmembrane and ubiquitin-like domain containing 2
known_NIR_2216	chr11	102175914	102178406	+	102175914	102176490	A3SS&ES	ENSMUST00000036376.13	known	0.00	0	51	0	51	n	0.00	0	62	0	62	n	0.00	0	40	0	40	n	0.07	3	37	3	37	y	0.00	0	73	0	73	n	0.00	0	23	0	23	n	0.07	4	51	4	51	y	0.03	1	33	1	33	n	0.00	0	45	0	45	n	0.03	2	61	2	61	y	0.00	0	32	0	32	n	0.00	0	53	0	53	n	ENSMUSG00000034757.16	Tmub2	chr11	protein_coding	transmembrane and ubiquitin-like domain containing 2
known_NIR_2217	chr11	102175914;102176942	102176490;102178134	+	102175914	102178134	cassetteExon	ENSMUST00000100387.11	known	0.68	25.5	12	51;0	12	n	0.76	31.5	10	62;1	10	n	0.37	21.0	36	40;2	36	y	0.52	19.5	18	37;2	18	y	0.62	36.5	22	73;0	22	n	0.46	12.0	14	23;1	14	n	0.54	25.5	22	51;0	22	n	0.48	16.5	18	33;0	18	n	0.66	23.0	12	45;1	12	n	0.65	31.5	17	61;2	17	y	0.41	16.0	23	32;0	23	n	0.65	26.5	14	53;0	14	n	ENSMUSG00000034757.16	Tmub2	chr11	protein_coding	transmembrane and ubiquitin-like domain containing 2
known_NIR_2218	chr11	102176942	102178134	+	102176544	102178134	A5SS	ENSMUST00000156326.2	known	0.00	0	49	0	49	n	0.02	1	45	1	45	n	0.04	2	54	2	54	y	0.05	2	36	2	36	y	0.00	0	66	0	66	n	0.04	1	27	1	27	n	0.00	0	55	0	55	n	0.00	0	34	0	34	n	0.02	1	43	1	43	n	0.03	2	67	2	67	y	0.00	0	36	0	36	n	0.00	0	49	0	49	n	ENSMUSG00000034757.16	Tmub2	chr11	protein_coding	transmembrane and ubiquitin-like domain containing 2
known_NIR_2219	chr11	102183921	102184102	-	102183978	102184102	A3SS	ENSMUST00000145484.2	known	0.95	41	2	41	2	y	0.92	24	2	24	2	y	0.83	67	14	67	14	y	0.90	44	5	44	5	y	0.95	80	4	80	4	y	0.90	19	2	19	2	y	0.94	50	3	50	3	y	0.89	39	5	39	5	y	0.95	35	2	35	2	y	0.92	61	5	61	5	y	0.87	41	6	41	6	y	0.88	56	8	56	8	y	ENSMUSG00000059995.13	Atxn7l3	chr11	protein_coding	ataxin 7-like 3
known_NIR_2220	chr11	102184168	102184472	-	102184147	102184472	A3SS	ENSMUST00000141516.8	known	0.19	9	39	9	39	y	0.17	7	35	7	35	y	0.17	15	75	15	75	y	0.15	9	50	9	50	y	0.17	14	68	14	68	y	0.18	5	23	5	23	y	0.22	14	49	14	49	y	0.22	10	35	10	35	y	0.11	5	40	5	40	y	0.16	12	62	12	62	y	0.15	7	41	7	41	y	0.05	3	56	3	56	y	ENSMUSG00000059995.13	Atxn7l3	chr11	protein_coding	ataxin 7-like 3
known_NIR_2221	chr11	102197825	102197909	-	102197825	102197905	A5SS	ENSMUST00000174302.8	known	0.02	3	135	3	135	y	0.03	5	161	5	161	y	0.01	1	177	1	177	n	0.01	1	140	1	140	n	0.00	0	188	0	188	n	0.01	1	101	1	101	n	0.01	1	197	1	197	n	0.00	0	97	0	97	n	0.05	6	110	6	110	y	0.00	1	214	1	214	n	0.00	0	142	0	142	n	0.00	0	159	0	159	n	ENSMUSG00000020923.18	Ubtf	chr11	protein_coding	upstream binding transcription factor, RNA polymerase I
known_NIR_2222	chr11	102201402	102202206	-	102201402;102201862	102201752;102202206	ES	ENSMUST00000174302.8	known	0.62	39	24.0	39	24;24	y	0.61	50	31.5	50	33;30	y	0.65	62	33.5	62	32;35	y	0.49	35	36.5	35	34;39	y	0.62	79	48.0	79	54;42	y	0.68	50	23.0	50	23;23	y	0.67	61	30.5	61	34;27	y	0.60	39	26.5	39	29;24	y	0.66	50	26.0	50	31;21	y	0.53	55	48.0	55	51;45	y	0.50	40	40.5	40	45;36	y	0.59	48	33.5	48	32;35	y	ENSMUSG00000020923.18	Ubtf	chr11	protein_coding	upstream binding transcription factor, RNA polymerase I
known_NIR_2223	chr11	102207299	102208000	-	102207299	102208408	A5SS	ENSMUST00000107117.9	known	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.33	3	6	3	6	n	0.20	1	4	1	4	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.20	2	8	2	8	y	0.00	0	5	0	5	n	0.15	2	11	2	11	y	ENSMUSG00000020923.18	Ubtf	chr11	protein_coding	upstream binding transcription factor, RNA polymerase I
known_NIR_2224	chr11	102207299	102208000	-	102207299	102209674	A5SS	ENSMUST00000174302.8	known	0.00	0	25	0	25	n	0.00	0	18	0	18	n	0.07	3	42	3	42	y	0.03	1	34	1	34	n	0.00	0	41	0	41	n	0.00	0	19	0	19	n	0.00	0	47	0	47	n	0.00	0	34	0	34	n	0.00	0	21	0	21	n	0.05	2	35	2	35	y	0.00	0	22	0	22	n	0.07	2	25	2	25	y	ENSMUSG00000020923.18	Ubtf	chr11	protein_coding	upstream binding transcription factor, RNA polymerase I
known_NIR_2225	chr11	102207299	102208408	-	102207299	102209674	A5SS	ENSMUST00000174302.8	known	0.14	4	25	4	25	y	0.22	5	18	5	18	y	0.12	6	42	6	42	y	0.11	4	34	4	34	y	0.23	12	41	12	41	y	0.30	8	19	8	19	y	0.13	7	47	7	47	y	0.11	4	34	4	34	y	0.16	4	21	4	21	y	0.19	8	35	8	35	y	0.19	5	22	5	22	y	0.31	11	25	11	25	y	ENSMUSG00000020923.18	Ubtf	chr11	protein_coding	upstream binding transcription factor, RNA polymerase I
known_NIR_2226	chr11	102207299	102210150	-	102207299	102208408	5pMXE	ENSMUST00000107117.9	known	0.20	1	4	1	4	n	0.17	1	5	1	5	n	0.33	3	6	3	6	n	0.00	0	4	0	4	n	0.29	5	12	5	12	y	0.20	2	8	2	8	y	0.22	2	7	2	7	n	0.20	1	4	1	4	n	0.33	2	4	2	4	n	0.33	4	8	4	8	y	0.17	1	5	1	5	n	0.21	3	11	3	11	y	ENSMUSG00000020923.18	Ubtf	chr11	protein_coding	upstream binding transcription factor, RNA polymerase I
known_NIR_2227	chr11	102207299	102210150	-	102207299	102209674	5pMXE	ENSMUST00000174302.8	known	0.04	1	25	1	25	n	0.05	1	18	1	18	n	0.07	3	42	3	42	y	0.00	0	34	0	34	n	0.11	5	41	5	41	y	0.10	2	19	2	19	y	0.04	2	47	2	47	y	0.03	1	34	1	34	n	0.09	2	21	2	21	y	0.10	4	35	4	35	y	0.04	1	22	1	22	n	0.11	3	25	3	25	y	ENSMUSG00000020923.18	Ubtf	chr11	protein_coding	upstream binding transcription factor, RNA polymerase I
known_NIR_2228	chr11	102291826	102292807	+	102291826	102292215	3pMXE	ENSMUST00000107105.9	known	0.00	0	2	0	2	n	0.60	3	2	3	2	n	1.00	3	0	3	0	n	-	-	-	-	-	-	0.91	10	1	10	1	n	1.00	2	0	2	0	n	0.75	3	1	3	1	n	1.00	3	0	3	0	n	0.83	5	1	5	1	n	1.00	4	0	4	0	n	-	-	-	-	-	-	0.73	8	3	8	3	y	ENSMUSG00000006575.15	Rundc3a	chr11	protein_coding	RUN domain containing 3A
known_NIR_2229	chr11	102294361	102294617	-	102294361	102294459	A5SS	ENSMUST00000153395.8	known	0.00	7	1606	7	1606	y	0.01	14	1751	14	1751	y	0.02	32	1919	32	1919	y	0.01	9	1546	9	1546	y	0.01	18	1980	18	1980	y	0.02	20	1171	20	1171	y	0.00	5	1939	5	1939	y	0.01	6	1146	6	1146	y	0.00	6	1258	6	1258	y	0.00	9	2193	9	2193	y	0.01	19	1948	19	1948	y	0.00	7	1838	7	1838	y	ENSMUSG00000018677.10	Slc25a39	chr11	protein_coding	solute carrier family 25, member 39
known_NIR_2230	chr11	102294361	102294617	-	102294361;102294539	102294459;102294617	ES	ENSMUST00000107098.8	known	0.00	7	1637.0	7	1606;1668	y	0.01	14	1811.0	14	1751;1871	y	0.02	32	1941.5	32	1919;1964	y	0.01	9	1556.5	9	1546;1567	y	0.01	18	2018.5	18	1980;2057	y	0.02	20	1217.0	20	1171;1263	y	0.00	5	1980.5	5	1939;2022	y	0.01	6	1106.5	6	1146;1067	y	0.00	6	1301.5	6	1258;1345	y	0.00	9	2238.0	9	2193;2283	y	0.01	19	1913.0	19	1948;1878	y	0.00	7	1860.0	7	1838;1882	y	ENSMUSG00000018677.10	Slc25a39	chr11	protein_coding	solute carrier family 25, member 39
known_NIR_2231	chr11	102295905	102297032	-	102295905;102296652	102296519;102297032	ES	ENSMUST00000018821.9	known	0.00	4	1162.0	4	1093;1231	y	0.00	4	1234.5	4	1156;1313	y	0.01	8	1565.5	8	1473;1658	y	0.00	3	1189.0	3	1112;1266	y	0.00	8	1613.0	8	1463;1763	y	0.00	3	999.5	3	902;1097	y	0.00	4	1575.5	4	1385;1766	y	0.00	2	929.5	2	864;995	y	0.00	4	979.5	4	892;1067	y	0.00	7	1742.0	7	1564;1920	y	0.00	4	1314.5	4	1266;1363	y	0.01	9	1521.5	9	1370;1673	y	ENSMUSG00000018677.10	Slc25a39	chr11	protein_coding	solute carrier family 25, member 39
known_NIR_2232	chr11	102295905	102297032	-	102296652	102297032	3pMXE	ENSMUST00000147860.2	known	0.00	4	1231	4	1231	y	0.00	4	1313	4	1313	y	0.00	8	1658	8	1658	y	0.00	3	1266	3	1266	y	0.00	8	1763	8	1763	y	0.00	3	1097	3	1097	y	0.00	4	1766	4	1766	y	0.00	2	995	2	995	y	0.00	4	1067	4	1067	y	0.00	7	1920	7	1920	y	0.00	4	1363	4	1363	y	0.01	9	1673	9	1673	y	ENSMUSG00000018677.10	Slc25a39	chr11	protein_coding	solute carrier family 25, member 39
known_NIR_2233	chr11	102297247	102297515	-	102297247	102297381	A5SS&ES	ENSMUST00000107098.8	known	0.00	0	1069	0	1069	n	0.00	0	1087	0	1087	n	0.00	4	1589	4	1589	y	0.00	2	1162	2	1162	y	0.01	9	1566	9	1566	y	0.01	7	1045	7	1045	y	0.00	5	1441	5	1441	y	0.00	3	920	3	920	y	0.00	2	948	2	948	y	0.00	3	1573	3	1573	y	0.00	0	1169	0	1169	n	0.01	7	1383	7	1383	y	ENSMUSG00000018677.10	Slc25a39	chr11	protein_coding	solute carrier family 25, member 39
known_NIR_2234	chr11	102297480	102297652	-	102297480	102298076	A5SS	ENSMUST00000149777.8	known	0.84	21	4	21	4	y	0.87	27	4	27	4	y	0.89	58	7	58	7	y	0.90	26	3	26	3	y	0.79	34	9	34	9	y	0.85	23	4	23	4	y	0.58	25	18	25	18	y	0.92	35	3	35	3	y	0.88	15	2	15	2	y	0.94	29	2	29	2	y	0.85	28	5	28	5	y	0.80	33	8	33	8	y	ENSMUSG00000018677.10	Slc25a39	chr11	protein_coding	solute carrier family 25, member 39
known_NIR_2235	chr11	102297480	102297652	-	102297480	102298216	A5SS	ENSMUST00000107098.8	known	0.03	21	673	21	673	y	0.04	27	667	27	667	y	0.07	58	792	58	792	y	0.03	26	742	26	742	y	0.03	34	1001	34	1001	y	0.04	23	552	23	552	y	0.03	25	931	25	931	y	0.06	35	508	35	508	y	0.03	15	562	15	562	y	0.03	29	933	29	933	y	0.04	28	740	28	740	y	0.04	33	864	33	864	y	ENSMUSG00000018677.10	Slc25a39	chr11	protein_coding	solute carrier family 25, member 39
known_NIR_2236	chr11	102297480	102298064	-	102297480	102297652	5pMXE	ENSMUST00000130436.8	known	0.38	13	21	13	21	y	0.18	6	27	6	27	y	0.21	15	58	15	58	y	0.33	13	26	13	26	y	0.44	27	34	27	34	y	0.28	9	23	9	23	y	0.43	19	25	19	25	y	0.26	12	35	12	35	y	0.55	18	15	18	15	y	0.36	16	29	16	29	y	0.30	12	28	12	28	y	0.28	13	33	13	33	y	ENSMUSG00000018677.10	Slc25a39	chr11	protein_coding	solute carrier family 25, member 39
known_NIR_2237	chr11	102297480	102298064	-	102297480	102298076	A5SS	ENSMUST00000149777.8	known	0.76	13	4	13	4	y	0.60	6	4	6	4	y	0.68	15	7	15	7	y	0.81	13	3	13	3	y	0.75	27	9	27	9	y	0.69	9	4	9	4	y	0.51	19	18	19	18	y	0.80	12	3	12	3	y	0.90	18	2	18	2	y	0.89	16	2	16	2	y	0.71	12	5	12	5	y	0.62	13	8	13	8	y	ENSMUSG00000018677.10	Slc25a39	chr11	protein_coding	solute carrier family 25, member 39
known_NIR_2238	chr11	102297480	102298064	-	102297480	102298216	A5SS	ENSMUST00000107098.8	known	0.02	13	673	13	673	y	0.01	6	667	6	667	y	0.02	15	792	15	792	y	0.02	13	742	13	742	y	0.03	27	1001	27	1001	y	0.02	9	552	9	552	y	0.02	19	931	19	931	y	0.02	12	508	12	508	y	0.03	18	562	18	562	y	0.02	16	933	16	933	y	0.02	12	740	12	740	y	0.01	13	864	13	864	y	ENSMUSG00000018677.10	Slc25a39	chr11	protein_coding	solute carrier family 25, member 39
known_NIR_2239	chr11	102297480	102298076	-	102297480	102298216	A5SS	ENSMUST00000107098.8	known	0.01	4	673	4	673	y	0.01	4	667	4	667	y	0.01	7	792	7	792	y	0.00	3	742	3	742	y	0.01	9	1001	9	1001	y	0.01	4	552	4	552	y	0.02	18	931	18	931	y	0.01	3	508	3	508	y	0.00	2	562	2	562	y	0.00	2	933	2	933	y	0.01	5	740	5	740	y	0.01	8	864	8	864	y	ENSMUSG00000018677.10	Slc25a39	chr11	protein_coding	solute carrier family 25, member 39
known_NIR_2240	chr11	102297480	102298604	-	102297480	102297652	5pMXE	ENSMUST00000130436.8	known	0.56	27	21	27	21	y	0.59	39	27	39	27	y	0.43	43	58	43	58	y	0.56	33	26	33	26	y	0.52	37	34	37	34	y	0.58	32	23	32	23	y	0.67	51	25	51	25	y	0.45	29	35	29	35	y	0.70	35	15	35	15	y	0.63	49	29	49	29	y	0.64	49	28	49	28	y	0.57	43	33	43	33	y	ENSMUSG00000018677.10	Slc25a39	chr11	protein_coding	solute carrier family 25, member 39
known_NIR_2241	chr11	102297480	102298604	-	102297480	102298064	5pMXE	ENSMUST00000154001.8	known	0.68	27	13	27	13	y	0.87	39	6	39	6	y	0.74	43	15	43	15	y	0.72	33	13	33	13	y	0.58	37	27	37	27	y	0.78	32	9	32	9	y	0.73	51	19	51	19	y	0.71	29	12	29	12	y	0.66	35	18	35	18	y	0.75	49	16	49	16	y	0.80	49	12	49	12	y	0.77	43	13	43	13	y	ENSMUSG00000018677.10	Slc25a39	chr11	protein_coding	solute carrier family 25, member 39
known_NIR_2242	chr11	102297480	102298604	-	102297480	102298076	5pMXE	ENSMUST00000149777.8	known	0.87	27	4	27	4	y	0.91	39	4	39	4	y	0.86	43	7	43	7	y	0.92	33	3	33	3	y	0.80	37	9	37	9	y	0.89	32	4	32	4	y	0.74	51	18	51	18	y	0.91	29	3	29	3	y	0.95	35	2	35	2	y	0.96	49	2	49	2	y	0.91	49	5	49	5	y	0.84	43	8	43	8	y	ENSMUSG00000018677.10	Slc25a39	chr11	protein_coding	solute carrier family 25, member 39
known_NIR_2243	chr11	102297480	102298604	-	102297480	102298216	5pMXE	ENSMUST00000107098.8	known	0.04	27	673	27	673	y	0.06	39	667	39	667	y	0.05	43	792	43	792	y	0.04	33	742	33	742	y	0.04	37	1001	37	1001	y	0.05	32	552	32	552	y	0.05	51	931	51	931	y	0.05	29	508	29	508	y	0.06	35	562	35	562	y	0.05	49	933	49	933	y	0.06	49	740	49	740	y	0.05	43	864	43	864	y	ENSMUSG00000018677.10	Slc25a39	chr11	protein_coding	solute carrier family 25, member 39
known_NIR_2244	chr11	102321528	102323791	+	102321366	102323791	A5SS	ENSMUST00000239431.2	known	0.04	12	322	12	322	y	0.01	2	279	2	279	y	0.02	11	528	11	528	y	0.02	7	409	7	409	y	0.03	18	591	18	591	y	0.03	10	343	10	343	y	0.03	14	526	14	526	y	0.02	7	420	7	420	y	0.00	1	217	1	217	n	0.02	8	375	8	375	y	0.02	4	210	4	210	y	0.02	6	387	6	387	y	ENSMUSG00000034708.13	Grn	chr11	protein_coding	granulin
known_NIR_2245	chr11	102326317	102326595	+	102326317	102326535	A3SS	ENSMUST00000239431.2	known	0.03	21	796	21	796	y	0.03	32	993	32	993	y	0.02	25	1098	25	1098	y	0.03	25	851	25	851	y	0.03	42	1359	42	1359	y	0.03	24	859	24	859	y	0.03	41	1267	41	1267	y	0.03	21	752	21	752	y	0.03	16	512	16	512	y	0.03	25	802	25	802	y	0.03	19	559	19	559	y	0.00	0	855	0	855	n	ENSMUSG00000034708.13	Grn	chr11	protein_coding	granulin
known_NIR_2246	chr11	102327074	102327175	+	102327074	102327161	A3SS	ENSMUST00000239431.2	known	0.00	0	1191	0	1191	n	0.02	26	1413	26	1413	y	0.00	0	1570	0	1570	n	0.03	30	983	30	983	y	0.00	0	1845	0	1845	n	0.00	0	1096	0	1096	n	0.00	0	1765	0	1765	n	0.02	21	1028	21	1028	y	0.00	0	753	0	753	n	0.02	19	1143	19	1143	y	0.02	22	862	22	862	y	0.00	0	1156	0	1156	n	ENSMUSG00000034708.13	Grn	chr11	protein_coding	granulin
known_NIR_2247	chr11	102378456;102379622	102379573;102391629	-	102378456	102391629	cassetteExon	ENSMUST00000143842.2	known	0.00	0.0	8	0;0	8	n	0.00	0.0	4	0;0	4	n	0.00	0.0	17	0;0	17	n	0.00	0.0	14	0;0	14	n	0.02	0.5	24	1;0	24	n	0.00	0.0	5	0;0	5	n	0.05	0.5	10	1;0	10	n	0.00	0.0	7	0;0	7	n	0.05	0.5	10	1;0	10	n	0.09	2.5	25	3;2	25	y	0.17	1.0	5	1;1	5	n	0.00	0.0	14	0;0	14	n	ENSMUSG00000034621.15	Gpatch8	chr11	protein_coding	G patch domain containing 8
known_NIR_2248	chr11	102577322	102581027	-	102577322	102579627	A5SS&ES	ENSMUST00000164506.3	known	0.00	0	29	0	29	n	0.09	2	20	2	20	y	0.04	1	25	1	25	n	0.06	2	30	2	30	y	0.04	2	43	2	43	y	0.08	1	11	1	11	n	0.04	2	43	2	43	y	0.00	0	24	0	24	n	0.07	2	28	2	28	y	0.14	5	31	5	31	y	0.08	2	24	2	24	y	0.00	0	29	0	29	n	ENSMUSG00000020925.17	Ccdc43	chr11	protein_coding	coiled-coil domain containing 43
known_NIR_2249	chr11	102577322	102581027	-	102577322;102579685	102579627;102581027	ES	ENSMUST00000092569.13	known	0.00	0	29.0	0	29;29	n	0.09	2	21.5	2	20;23	y	0.04	1	25.5	1	25;26	n	0.06	2	31.5	2	30;33	y	0.04	2	43.0	2	43;43	y	0.11	1	8.5	1	11;6	n	0.04	2	45.5	2	43;48	y	0.00	0	21.5	0	24;19	n	0.07	2	26.5	2	28;25	y	0.15	5	29.0	5	31;27	y	0.07	2	27.0	2	24;30	y	0.00	0	28.5	0	29;28	n	ENSMUSG00000020925.17	Ccdc43	chr11	protein_coding	coiled-coil domain containing 43
known_NIR_2250	chr11	102577322	102581027	-	102579685	102581027	3pMXE	ENSMUST00000153157.8	known	0.00	0	29	0	29	n	0.08	2	23	2	23	y	0.04	1	26	1	26	n	0.06	2	33	2	33	y	0.04	2	43	2	43	y	0.14	1	6	1	6	n	0.04	2	48	2	48	y	0.00	0	19	0	19	n	0.07	2	25	2	25	y	0.16	5	27	5	27	y	0.06	2	30	2	30	y	0.00	0	28	0	28	n	ENSMUSG00000020925.17	Ccdc43	chr11	protein_coding	coiled-coil domain containing 43
known_NIR_2251	chr11	102662336	102662563	+	102662336	102662741	A3SS	ENSMUST00000103081.10	known	0.76	19	6	19	6	y	1.00	12	0	12	0	n	0.67	2	1	2	1	n	0.56	5	4	5	4	n	0.77	10	3	10	3	y	-	-	-	-	-	-	0.94	15	1	15	1	n	0.50	1	1	1	1	n	0.86	12	2	12	2	y	0.89	16	2	16	2	y	0.67	12	6	12	6	y	0.91	10	1	10	1	n	ENSMUSG00000020926.17	Adam11	chr11	protein_coding	a disintegrin and metallopeptidase domain 11
known_NIR_2252	chr11	102729620	102734966	-	102734258	102734966	A3SS&ES	ENSMUST00000021306.14	known	0.00	0	52	0	52	n	0.00	0	51	0	51	n	0.00	0	81	0	81	n	0.00	0	51	0	51	n	0.00	0	84	0	84	n	0.00	0	42	0	42	n	0.03	2	63	2	63	y	0.00	0	46	0	46	n	0.00	0	46	0	46	n	0.00	0	70	0	70	n	0.00	0	59	0	59	n	0.00	0	78	0	78	n	ENSMUSG00000020929.15	Eftud2	chr11	protein_coding	elongation factor Tu GTP binding domain containing 2
known_NIR_2253	chr11	102762008	102768436	-	102762011	102768436	A3SS	ENSMUST00000021306.14	known	0.76	19	6	19	6	y	0.80	12	3	12	3	y	0.92	49	4	49	4	y	0.80	24	6	24	6	y	0.93	25	2	25	2	y	1.00	23	0	23	0	n	0.90	27	3	27	3	y	0.92	22	2	22	2	y	0.95	20	1	20	1	n	0.97	31	1	31	1	n	0.84	21	4	21	4	y	0.96	22	1	22	1	n	ENSMUSG00000020929.15	Eftud2	chr11	protein_coding	elongation factor Tu GTP binding domain containing 2
known_NIR_2254	chr11	102891182	102918086	-	102891182	102907876	5pMXE	ENSMUST00000021313.9	known	0.00	0	15	0	15	n	0.08	2	24	2	24	y	0.08	6	65	6	65	y	0.10	4	36	4	36	y	0.11	3	24	3	24	y	0.04	1	26	1	26	n	0.12	4	28	4	28	y	0.08	2	24	2	24	y	0.00	0	18	0	18	n	0.18	5	23	5	23	y	0.00	0	26	0	26	n	0.11	2	16	2	16	y	ENSMUSG00000020935.9	Dcakd	chr11	protein_coding	dephospho-CoA kinase domain containing
known_NIR_2255	chr11	102918247;102918898	102918814;102918975	-	102918247	102918975	cassetteExon	ENSMUST00000155490.3	known	0.08	2.5	30	5;0	30	n	0.00	0.0	19	0;0	19	n	0.05	1.5	28	2;1	28	n	0.03	1.0	39	2;0	39	n	0.11	5.5	46	6;5	46	y	0.07	1.5	19	3;0	19	n	0.06	3.5	59	6;1	59	n	0.05	1.0	21	2;0	21	n	0.08	2.5	29	2;3	29	y	0.03	2.5	69	3;2	69	y	0.10	3.0	26	2;4	26	y	0.03	1.5	47	1;2	47	n	ENSMUSG00000020935.9	Dcakd	chr11	protein_coding	dephospho-CoA kinase domain containing
known_NIR_2256	chr11	102993922	102994061	+	102993971	102994061	A5SS	ENSMUST00000130749.9	known	0.00	0	27	0	27	n	0.12	4	30	4	30	y	0.00	0	13	0	13	n	0.12	6	42	6	42	y	0.07	4	52	4	52	y	0.29	5	12	5	12	y	0.05	3	52	3	52	y	0.05	1	19	1	19	n	0.03	1	30	1	30	n	0.06	3	49	3	49	y	0.14	6	38	6	38	y	0.11	6	47	6	47	y	ENSMUSG00000056938.17	Acbd4	chr11	protein_coding	acyl-Coenzyme A binding domain containing 4
known_NIR_2257	chr11	102993922	102994352	+	102994195	102994352	A5SS&ES	ENSMUST00000130749.9	known	0.00	0	133	0	133	n	0.00	0	101	0	101	n	0.02	1	52	1	52	n	0.01	1	119	1	119	n	0.00	0	181	0	181	n	0.00	0	51	0	51	n	0.00	0	166	0	166	n	0.00	0	55	0	55	n	0.02	2	87	2	87	y	0.01	2	179	2	179	y	0.00	0	144	0	144	n	0.00	0	118	0	118	n	ENSMUSG00000056938.17	Acbd4	chr11	protein_coding	acyl-Coenzyme A binding domain containing 4
known_NIR_2258	chr11	102993922;102994195	102994061;102994352	+	102993922	102994352	cassetteExon	ENSMUST00000107040.10	known	1.00	66.5	0	0;133	0	n	1.00	52.5	0	4;101	0	n	0.96	26.0	1	0;52	1	n	0.98	62.5	1	6;119	1	n	1.00	92.5	0	4;181	0	n	1.00	28.0	0	5;51	0	n	1.00	84.5	0	3;166	0	n	1.00	28.0	0	1;55	0	n	0.96	44.0	2	1;87	2	n	0.98	91.0	2	3;179	2	y	1.00	75.0	0	6;144	0	n	1.00	62.0	0	6;118	0	n	ENSMUSG00000056938.17	Acbd4	chr11	protein_coding	acyl-Coenzyme A binding domain containing 4
known_NIR_2259	chr11	102993971	102994352	+	102993922	102994352	A5SS	ENSMUST00000107040.10	known	1.00	13	0	13	0	n	1.00	8	0	8	0	n	0.91	10	1	10	1	n	0.92	11	1	11	1	n	1.00	17	0	17	0	n	1.00	6	0	6	0	n	1.00	9	0	9	0	n	1.00	2	0	2	0	n	0.75	6	2	6	2	n	0.88	14	2	14	2	y	1.00	7	0	7	0	n	1.00	7	0	7	0	n	ENSMUSG00000056938.17	Acbd4	chr11	protein_coding	acyl-Coenzyme A binding domain containing 4
known_NIR_2260	chr11	102993971	102994352	+	102993971;102994195	102994061;102994352	ES	ENSMUST00000130749.9	known	0.14	13	80.0	13	27;133	y	0.11	8	65.5	8	30;101	y	0.24	10	32.5	10	13;52	y	0.12	11	80.5	11	42;119	y	0.13	17	116.5	17	52;181	y	0.16	6	31.5	6	12;51	y	0.08	9	109.0	9	52;166	y	0.05	2	37.0	2	19;55	y	0.09	6	58.5	6	30;87	y	0.11	14	114.0	14	49;179	y	0.07	7	91.0	7	38;144	y	0.08	7	82.5	7	47;118	y	ENSMUSG00000056938.17	Acbd4	chr11	protein_coding	acyl-Coenzyme A binding domain containing 4
known_NIR_2261	chr11	102993971	102994352	+	102994195	102994352	A5SS&ES	ENSMUST00000134884.8	known	0.09	13	133	13	133	y	0.07	8	101	8	101	y	0.16	10	52	10	52	y	0.08	11	119	11	119	y	0.09	17	181	17	181	y	0.11	6	51	6	51	y	0.05	9	166	9	166	y	0.04	2	55	2	55	y	0.06	6	87	6	87	y	0.07	14	179	14	179	y	0.05	7	144	7	144	y	0.06	7	118	7	118	y	ENSMUSG00000056938.17	Acbd4	chr11	protein_coding	acyl-Coenzyme A binding domain containing 4
known_NIR_2262	chr11	102994470	102994919	+	102994470	102994726	3pMXE	ENSMUST00000130749.9	known	0.22	40	146	40	146	y	0.37	48	82	48	82	y	0.26	20	56	20	56	y	0.27	39	106	39	106	y	0.23	53	175	53	175	y	0.22	11	38	11	38	y	0.22	47	165	47	165	y	0.20	19	77	19	77	y	0.32	42	89	42	89	y	0.23	47	161	47	161	y	0.20	30	122	30	122	y	0.19	30	129	30	129	y	ENSMUSG00000056938.17	Acbd4	chr11	protein_coding	acyl-Coenzyme A binding domain containing 4
known_NIR_2263	chr11	102994470;102994846	102994726;102994919	+	102994470	102994919	cassetteExon	ENSMUST00000107040.10	known	0.76	129.0	40	146;112	40	y	0.62	77.5	48	82;73	48	y	0.72	51.0	20	56;46	20	y	0.74	113.0	39	106;120	39	y	0.75	161.0	53	175;147	53	y	0.79	42.0	11	38;46	11	y	0.77	154.5	47	165;144	47	y	0.77	62.0	19	77;47	19	y	0.69	95.5	42	89;102	42	y	0.76	146.5	47	161;132	47	y	0.80	123.5	30	122;125	30	y	0.79	113.0	30	129;97	30	y	ENSMUSG00000056938.17	Acbd4	chr11	protein_coding	acyl-Coenzyme A binding domain containing 4
known_NIR_2264	chr11	102997060;103002256	103002108;103002368	+	102997060	103002368	cassetteExon	ENSMUST00000107040.10	known	0.03	4.5	159	5;4	159	y	0.04	5.5	132	7;4	132	y	0.00	0.0	66	0;0	66	n	0.03	3.0	112	4;2	112	y	0.04	6.0	163	6;6	163	y	0.06	3.5	55	5;2	55	y	0.03	6.0	182	4;8	182	y	0.02	1.5	83	2;1	83	n	0.03	3.5	108	5;2	108	y	0.02	4.5	206	5;4	206	y	0.04	6.0	147	4;8	147	y	0.04	6.0	150	6;6	150	y	ENSMUSG00000056938.17	Acbd4	chr11	protein_coding	acyl-Coenzyme A binding domain containing 4
known_NIR_2265	chr11	103271178	103285514	-	103271178;103278174	103277784;103285514	ES	ENSMUST00000041272.10	known	0.00	0	7.5	0	6;9	n	0.00	0	9.0	0	9;9	n	0.00	0	21.0	0	23;19	n	0.11	2	16.5	2	13;20	y	0.00	0	28.0	0	25;31	n	0.09	1	10.5	1	10;11	n	0.04	1	23.0	1	29;17	n	0.00	0	17.5	0	21;14	n	0.00	0	8.5	0	9;8	n	0.00	0	17.5	0	17;18	n	0.08	1	11.0	1	10;12	n	0.00	0	24.5	0	17;32	n	ENSMUSG00000034247.10	Plekhm1	chr11	protein_coding	pleckstrin homology domain containing, family M (with RUN domain) member 1
known_NIR_2266	chr11	103570223	103577408	-	103570223;103574758	103574618;103577408	ES	ENSMUST00000021329.14	known	0.04	8	170.0	8	182;158	y	0.06	11	160.0	11	157;163	y	0.06	20	339.5	20	346;333	y	0.04	8	179.5	8	168;191	y	0.05	16	311.0	16	284;338	y	0.05	12	225.0	12	217;233	y	0.05	12	237.5	12	229;246	y	0.06	16	243.0	16	235;251	y	0.08	15	162.0	15	151;173	y	0.05	12	217.5	12	222;213	y	0.05	9	157.5	9	151;164	y	0.05	10	182.0	10	184;180	y	ENSMUSG00000020946.14	Gosr2	chr11	protein_coding	golgi SNAP receptor complex member 2
known_NIR_2267	chr11	103578459	103588456	-	103578459;103580145	103580081;103588456	ES	ENSMUST00000021329.14	known	0.08	8	98.0	8	114;82	y	0.11	9	76.5	9	86;67	y	0.12	29	214.5	29	261;168	y	0.05	6	107.5	6	130;85	y	0.11	18	152.5	18	172;133	y	0.07	9	122.0	9	143;101	y	0.09	11	115.5	11	137;94	y	0.12	16	122.5	16	151;94	y	0.06	6	92.0	6	96;88	y	0.05	6	113.5	6	115;112	y	0.06	5	81.5	5	87;76	y	0.16	22	114.5	22	125;104	y	ENSMUSG00000020946.14	Gosr2	chr11	protein_coding	golgi SNAP receptor complex member 2
known_NIR_2268	chr11	103821641;103821949	103821902;103844796	-	103821641	103844796	cassetteExon	ENSMUST00000103075.11	known	0.00	0.0	5	0;0	5	n	0.00	0.0	9	0;0	9	n	0.31	5.0	11	5;5	11	y	0.10	1.0	9	1;1	9	n	0.04	0.5	12	1;0	12	n	0.00	0.0	5	0;0	5	n	0.00	0.0	9	0;0	9	n	0.05	0.5	10	1;0	10	n	0.27	1.5	4	1;2	4	n	0.00	0.0	6	0;0	6	n	0.14	0.5	3	1;0	3	n	0.00	0.0	4	0;0	4	n	ENSMUSG00000034187.19	Nsf	chr11	protein_coding	N-ethylmaleimide sensitive fusion protein
known_NIR_2269	chr11	103858203	103859905	+	103857653	103859905	A5SS	ENSMUST00000057921.10	known	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.03	1	29	1	29	n	0.00	0	14	0	14	n	0.06	1	15	1	15	n	0.00	0	21	0	21	n	0.09	2	20	2	20	y	0.00	0	15	0	15	n	0.00	0	11	0	11	n	0.10	1	9	1	9	n	0.06	1	16	1	16	n	0.08	1	12	1	12	n	ENSMUSG00000062421.14	Arf2	chr11	protein_coding	ADP-ribosylation factor 2
known_NIR_2270	chr11	104193236;104196235	104196038;104197452	+	104193236	104197452	cassetteExon	ENSMUST00000106992.10	known	-	-	-	-	-	-	1.00	0.5	0	0;1	0	n	1.00	0.5	0	1;0	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0.0	2	0;0	2	n	0.40	4.0	6	3;5	6	y	-	-	-	-	-	-	1.00	0.5	0	0;1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000018411.18	Mapt	chr11	protein_coding	microtubule-associated protein tau
known_NIR_2271	chr11	104233337;104233873	104233685;104234317	-	104233337	104234317	cassetteExon	ENSMUST00000106977.8	known	0.96	27.0	1	30;24	1	n	0.75	21.5	7	16;27	7	y	0.80	28.5	7	27;30	7	y	0.89	25.5	3	30;21	3	y	0.92	34.0	3	31;37	3	y	0.92	24.0	2	24;24	2	y	0.83	33.5	7	35;32	7	y	0.82	23.0	5	20;26	5	y	0.81	22.0	5	15;29	5	y	0.90	28.5	3	26;31	3	y	0.84	26.5	5	37;16	5	y	0.97	32.5	1	27;38	1	n	ENSMUSG00000018412.17	Kansl1	chr11	protein_coding	KAT8 regulatory NSL complex subunit 1
known_NIR_2272	chr11	104316119	104317250	-	104316119	104332551	A5SS	ENSMUST00000106977.8	known	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.18	2	9	2	9	y	0.15	2	11	2	11	y	0.18	2	9	2	9	y	0.31	4	9	4	9	y	0.33	3	6	3	6	n	0.29	2	5	2	5	n	0.20	2	8	2	8	y	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.22	2	7	2	7	n	ENSMUSG00000018412.17	Kansl1	chr11	protein_coding	KAT8 regulatory NSL complex subunit 1
known_NIR_2273	chr11	104316119	104358465	-	104316119	104332551	5pMXE	ENSMUST00000106977.8	known	0.40	2	3	2	3	n	0.57	4	3	4	3	n	0.10	1	9	1	9	n	0.15	2	11	2	11	y	0.25	3	9	3	9	y	0.00	0	9	0	9	n	0.40	4	6	4	6	y	0.29	2	5	2	5	n	0.20	2	8	2	8	y	0.33	2	4	2	4	n	0.33	2	4	2	4	n	0.36	4	7	4	7	y	ENSMUSG00000018412.17	Kansl1	chr11	protein_coding	KAT8 regulatory NSL complex subunit 1
known_NIR_2274	chr11	104411662	104413549	-	104411662;104412414	104412207;104413549	ES	ENSMUST00000093923.9	known	0.00	0	15.5	0	6;25	n	0.00	0	10.0	0	11;9	n	0.09	2	21.0	2	12;30	y	0.00	0	27.0	0	21;33	n	0.03	1	29.5	1	23;36	n	0.00	0	12.5	0	6;19	n	0.00	0	21.0	0	15;27	n	0.00	0	17.5	0	15;20	n	0.09	1	10.5	1	8;13	n	0.00	0	24.0	0	13;35	n	0.06	1	15.5	1	9;22	n	0.08	2	23.0	2	14;32	y	ENSMUSG00000020687.14	Cdc27	chr11	protein_coding	cell division cycle 27
known_NIR_2275	chr11	104417010	104417689	-	104416992	104417689	A3SS	ENSMUST00000093923.9	known	0.12	2	14	2	14	y	0.14	1	6	1	6	n	0.09	3	29	3	29	y	0.03	1	29	1	29	n	0.20	6	24	6	24	y	0.09	2	20	2	20	y	0.11	2	16	2	16	y	0.36	4	7	4	7	y	0.05	1	20	1	20	n	0.10	2	18	2	18	y	0.00	0	13	0	13	n	0.14	4	24	4	24	y	ENSMUSG00000020687.14	Cdc27	chr11	protein_coding	cell division cycle 27
known_NIR_2276	chr11	105018267	105019567	+	105017693	105019567	A5SS	ENSMUST00000021030.8	known	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.07	1	14	1	14	n	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.23	3	10	3	10	y	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.00	0	20	0	20	n	ENSMUSG00000020691.14	Mettl2	chr11	protein_coding	methyltransferase like 2
known_NIR_2277	chr11	105028610	105029387	+	105028610	105030387	A3SS	ENSMUST00000021030.8	known	0.00	0	23	0	23	n	0.00	0	16	0	16	n	0.00	0	25	0	25	n	0.00	0	25	0	25	n	0.06	2	30	2	30	y	0.08	1	12	1	12	n	0.00	0	24	0	24	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.12	3	21	3	21	y	0.00	0	26	0	26	n	0.08	2	22	2	22	y	ENSMUSG00000020691.14	Mettl2	chr11	protein_coding	methyltransferase like 2
known_NIR_2278	chr11	105073184	105075038	+	105072877	105075038	A5SS	ENSMUST00000106941.9	known	0.15	2	11	2	11	y	0.14	1	6	1	6	n	0.00	0	19	0	19	n	0.00	0	15	0	15	n	0.07	1	14	1	14	n	0.00	0	9	0	9	n	0.17	1	5	1	5	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.12	2	14	2	14	y	ENSMUSG00000020694.18	Tlk2	chr11	protein_coding	tousled-like kinase 2 (Arabidopsis)
known_NIR_2279	chr11	105099747	105112012	+	105099747	105100620	3pMXE	ENSMUST00000126054.8	known	0.12	2	15	2	15	y	0.00	0	12	0	12	n	0.03	1	38	1	38	n	0.10	3	26	3	26	y	0.03	1	31	1	31	n	0.00	0	16	0	16	n	0.00	0	29	0	29	n	0.05	1	18	1	18	n	0.00	0	19	0	19	n	0.11	3	24	3	24	y	0.05	1	20	1	20	n	0.00	0	30	0	30	n	ENSMUSG00000020694.18	Tlk2	chr11	protein_coding	tousled-like kinase 2 (Arabidopsis)
known_NIR_2280	chr11	105099747	105112012	+	105099747;105100663	105100620;105112012	ES	ENSMUST00000106939.9	known	0.19	2	8.5	2	15;2	y	0.00	0	6.0	0	12;0	n	0.04	1	24.0	1	38;10	n	0.15	3	16.5	3	26;7	y	0.05	1	18.0	1	31;5	n	0.00	0	9.5	0	16;3	n	0.00	0	17.5	0	29;6	n	0.08	1	11.0	1	18;4	n	0.00	0	12.5	0	19;6	n	0.19	3	12.5	3	24;1	n	0.08	1	11.0	1	20;2	n	0.00	0	16.5	0	30;3	n	ENSMUSG00000020694.18	Tlk2	chr11	protein_coding	tousled-like kinase 2 (Arabidopsis)
known_NIR_2281	chr11	105100663	105112012	+	105100663	105101371	3pMXE	ENSMUST00000149459.8	known	0.18	2	9	2	9	y	0.00	0	12	0	12	n	0.28	10	26	10	26	y	0.50	7	7	7	7	y	0.22	5	18	5	18	y	0.25	3	9	3	9	y	0.27	6	16	6	16	y	0.20	4	16	4	16	y	0.40	6	9	6	9	y	0.07	1	14	1	14	n	0.18	2	9	2	9	y	0.12	3	21	3	21	y	ENSMUSG00000020694.18	Tlk2	chr11	protein_coding	tousled-like kinase 2 (Arabidopsis)
known_NIR_2282	chr11	105100663;105101466	105101371;105112012	+	105100663	105112012	cassetteExon	ENSMUST00000106939.9	known	0.84	10.5	2	9;12	2	y	1.00	15.0	0	12;18	0	n	0.77	34.0	10	26;42	10	y	0.64	12.5	7	7;18	7	y	0.82	23.0	5	18;28	5	y	0.82	14.0	3	9;19	3	y	0.82	26.5	6	16;37	6	y	0.80	16.5	4	16;17	4	y	0.68	12.5	6	9;16	6	y	0.94	16.0	1	14;18	1	n	0.85	11.5	2	9;14	2	y	0.86	19.0	3	21;17	3	y	ENSMUSG00000020694.18	Tlk2	chr11	protein_coding	tousled-like kinase 2 (Arabidopsis)
known_NIR_2283	chr11	105101466	105112012	+	105099747	105112012	A5SS	ENSMUST00000126175.8	known	0.86	12	2	12	2	y	1.00	18	0	18	0	n	0.98	42	1	42	1	n	0.86	18	3	18	3	y	0.97	28	1	28	1	n	1.00	19	0	19	0	n	1.00	37	0	37	0	n	0.94	17	1	17	1	n	1.00	16	0	16	0	n	0.86	18	3	18	3	y	0.93	14	1	14	1	n	1.00	17	0	17	0	n	ENSMUSG00000020694.18	Tlk2	chr11	protein_coding	tousled-like kinase 2 (Arabidopsis)
known_NIR_2284	chr11	105112179	105132395	+	105112179	105131187	3pMXE	ENSMUST00000123050.2	known	0.12	6	42	6	42	y	0.12	2	14	2	14	y	0.14	5	30	5	30	y	0.00	0	12	0	12	n	0.12	4	28	4	28	y	0.06	2	34	2	34	y	0.07	2	27	2	27	y	0.08	2	23	2	23	y	0.14	2	12	2	12	y	0.13	4	26	4	26	y	0.06	1	15	1	15	n	0.13	4	26	4	26	y	ENSMUSG00000020694.18	Tlk2	chr11	protein_coding	tousled-like kinase 2 (Arabidopsis)
known_NIR_2285	chr11	105112179	105132395	+	105112179;105131282	105131187;105132395	ES	ENSMUST00000106939.9	known	0.17	6	30.0	6	42;18	y	0.10	2	17.5	2	14;21	y	0.13	5	33.0	5	30;36	y	0.00	0	17.5	0	12;23	n	0.13	4	27.0	4	28;26	y	0.07	2	27.5	2	34;21	y	0.07	2	25.5	2	27;24	y	0.08	2	23.5	2	23;24	y	0.12	2	14.5	2	12;17	y	0.13	4	27.0	4	26;28	y	0.07	1	13.5	1	15;12	n	0.14	4	24.5	4	26;23	y	ENSMUSG00000020694.18	Tlk2	chr11	protein_coding	tousled-like kinase 2 (Arabidopsis)
known_NIR_2286	chr11	105132487	105138285	+	105132487;105137710	105137600;105138285	ES	ENSMUST00000106939.9	known	0.04	1	21.5	1	24;19	n	0.03	1	29.0	1	18;40	n	0.05	2	40.0	2	37;43	y	0.04	1	22.0	1	17;27	n	0.00	0	26.0	0	20;32	n	0.00	0	15.5	0	19;12	n	0.00	0	26.5	0	31;22	n	0.11	3	24.0	3	25;23	y	0.06	1	16.0	1	16;16	n	0.00	0	31.5	0	38;25	n	0.00	0	19.0	0	23;15	n	0.00	0	42.0	0	39;45	n	ENSMUSG00000020694.18	Tlk2	chr11	protein_coding	tousled-like kinase 2 (Arabidopsis)
known_NIR_2287	chr11	105132487	105138285	+	105137710	105138285	5pMXE	ENSMUST00000134419.2	known	0.05	1	19	1	19	n	0.02	1	40	1	40	n	0.04	2	43	2	43	y	0.04	1	27	1	27	n	0.00	0	32	0	32	n	0.00	0	12	0	12	n	0.00	0	22	0	22	n	0.12	3	23	3	23	y	0.06	1	16	1	16	n	0.00	0	25	0	25	n	0.00	0	15	0	15	n	0.00	0	45	0	45	n	ENSMUSG00000020694.18	Tlk2	chr11	protein_coding	tousled-like kinase 2 (Arabidopsis)
known_NIR_2288	chr11	105144062	105145792	+	105144183	105145792	A5SS&ES	ENSMUST00000106939.9	known	0.00	0	35	0	35	n	0.07	2	28	2	28	y	0.04	2	49	2	49	y	0.07	3	38	3	38	y	0.04	2	46	2	46	y	0.04	1	24	1	24	n	0.04	2	47	2	47	y	0.06	2	33	2	33	y	0.04	1	26	1	26	n	0.02	1	45	1	45	n	0.00	0	30	0	30	n	0.08	4	48	4	48	y	ENSMUSG00000020694.18	Tlk2	chr11	protein_coding	tousled-like kinase 2 (Arabidopsis)
known_NIR_2289	chr11	105826779	105827008	-	105826735	105827008	A3SS	ENSMUST00000019734.11	known	0.03	2	70	2	70	y	0.07	5	63	5	63	y	0.14	25	158	25	158	y	0.07	5	67	5	67	y	0.10	13	122	13	122	y	0.05	4	82	4	82	y	0.13	11	76	11	76	y	0.08	8	92	8	92	y	0.00	0	33	0	33	n	0.15	9	52	9	52	y	0.09	3	32	3	32	y	0.08	5	58	5	58	y	ENSMUSG00000019590.17	Cyb561	chr11	protein_coding	cytochrome b-561
known_NIR_2290	chr11	105828666;105831204	105830926;105834937	-	105828666	105834937	cassetteExon	ENSMUST00000019734.11	known	0.20	5.0	20	7;3	20	y	0.23	8.5	29	12;5	29	y	0.22	20.0	70	30;10	70	y	0.31	10.5	23	13;8	23	y	0.20	15.0	60	26;4	60	y	0.17	8.0	38	13;3	38	y	0.20	9.0	36	15;3	36	y	0.25	11.5	35	17;6	35	y	0.25	5.0	15	5;5	15	y	0.26	8.0	23	12;4	23	y	0.20	3.5	14	4;3	14	y	0.13	4.0	26	3;5	26	y	ENSMUSG00000019590.17	Cyb561	chr11	protein_coding	cytochrome b-561
known_NIR_2291	chr11	106043220	106044778	+	106043220	106044792	A3SS	ENSMUST00000002044.10	known	0.00	0	31	0	31	n	0.00	0	34	0	34	n	0.00	0	53	0	53	n	0.00	0	31	0	31	n	0.02	1	48	1	48	n	0.00	0	29	0	29	n	0.00	0	54	0	54	n	0.00	0	25	0	25	n	0.00	0	24	0	24	n	0.00	0	26	0	26	n	0.09	2	20	2	20	y	0.00	0	30	0	30	n	ENSMUSG00000020700.12	Map3k3	chr11	protein_coding	mitogen-activated protein kinase kinase kinase 3
known_NIR_2292	chr11	106156826	106157363	-	106156809	106157363	A3SS	ENSMUST00000106843.8	known	0.00	0	101	0	101	n	0.02	2	109	2	109	y	0.02	1	54	1	54	n	0.01	1	108	1	108	n	0.00	0	132	0	132	n	0.00	0	46	0	46	n	0.00	0	91	0	91	n	0.00	0	69	0	69	n	0.03	2	73	2	73	y	0.01	1	159	1	159	n	0.00	0	100	0	100	n	0.01	1	108	1	108	n	ENSMUSG00000078619.11	Smarcd2	chr11	protein_coding	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
known_NIR_2293	chr11	106325813	106349734	-	106325813;106327949	106327916;106349734	ES	ENSMUST00000001059.9	known	0.00	0	18.5	0	21;16	n	0.15	2	11.5	2	12;11	y	0.00	0	30.5	0	30;31	n	0.04	2	43.0	2	39;47	y	0.08	5	57.0	5	59;55	y	0.03	1	31.5	1	32;31	n	0.06	2	31.0	2	29;33	y	0.09	3	31.0	3	31;31	y	0.06	2	29.0	2	33;25	y	0.08	3	35.0	3	38;32	y	0.00	0	22.5	0	23;22	n	0.06	3	51.5	3	51;52	y	ENSMUSG00000020715.10	Ern1	chr11	protein_coding	endoplasmic reticulum (ER) to nucleus signalling 1
known_NIR_2294	chr11	106404532	106410708	-	106404538	106410708	A3SS	ENSMUST00000042780.14	known	0.03	6	182	6	182	y	0.01	2	140	2	140	y	0.04	9	207	9	207	y	0.02	4	189	4	189	y	0.03	8	259	8	259	y	0.02	2	124	2	124	y	0.03	5	177	5	177	y	0.02	3	120	3	120	y	0.01	1	181	1	181	n	0.04	11	234	11	234	y	0.03	5	178	5	178	y	0.04	8	215	8	215	y	ENSMUSG00000040548.17	Tex2	chr11	protein_coding	testis expressed gene 2
known_NIR_2295	chr11	106459453	106469861	-	106459453	106503684	A5SS	ENSMUST00000042780.14	known	0.06	3	49	3	49	y	0.00	0	19	0	19	n	0.15	7	39	7	39	y	0.00	0	70	0	70	n	0.02	2	79	2	79	y	0.09	3	32	3	32	y	0.06	4	64	4	64	y	0.06	3	48	3	48	y	0.02	1	50	1	50	n	0.05	4	71	4	71	y	0.00	0	49	0	49	n	0.00	0	40	0	40	n	ENSMUSG00000040548.17	Tex2	chr11	protein_coding	testis expressed gene 2
known_NIR_2296	chr11	106459453	106504041	-	106459453	106469861	5pMXE	ENSMUST00000103070.3	known	0.57	4	3	4	3	n	1.00	1	0	1	0	n	0.12	1	7	1	7	n	1.00	12	0	12	0	n	0.78	7	2	7	2	n	0.62	5	3	5	3	n	0.33	2	4	2	4	n	0.00	0	3	0	3	n	0.75	3	1	3	1	n	0.73	11	4	11	4	y	1.00	1	0	1	0	n	1.00	10	0	10	0	n	ENSMUSG00000040548.17	Tex2	chr11	protein_coding	testis expressed gene 2
known_NIR_2297	chr11	106459453	106504041	-	106459453	106503684	5pMXE	ENSMUST00000042780.14	known	0.08	4	49	4	49	y	0.05	1	19	1	19	n	0.03	1	39	1	39	n	0.15	12	70	12	70	y	0.08	7	79	7	79	y	0.14	5	32	5	32	y	0.03	2	64	2	64	y	0.00	0	48	0	48	n	0.06	3	50	3	50	y	0.13	11	71	11	71	y	0.02	1	49	1	49	n	0.20	10	40	10	40	y	ENSMUSG00000040548.17	Tex2	chr11	protein_coding	testis expressed gene 2
known_NIR_2298	chr11	106545988	106552828	-	106545988	106570375	A5SS	ENSMUST00000103069.10	known	0.35	7	13	7	13	y	0.45	5	6	5	6	y	0.40	18	27	18	27	y	0.38	5	8	5	8	y	0.59	30	21	30	21	y	0.57	12	9	12	9	y	0.49	20	21	20	21	y	0.58	7	5	7	5	y	0.67	8	4	8	4	y	0.38	6	10	6	10	y	0.58	7	5	7	5	y	0.56	9	7	9	7	y	ENSMUSG00000020717.20	Pecam1	chr11	protein_coding	platelet/endothelial cell adhesion molecule 1
known_NIR_2299	chr11	106545988	106562568	-	106552850	106562568	3pMXE	ENSMUST00000068021.9	known	0.40	4	6	4	6	y	0.65	11	6	11	6	y	0.52	17	16	17	16	y	0.57	8	6	8	6	y	0.47	18	20	18	20	y	0.25	3	9	3	9	y	0.50	20	20	20	20	y	0.47	7	8	7	8	y	0.20	2	8	2	8	y	0.62	8	5	8	5	y	0.45	5	6	5	6	y	0.60	12	8	12	8	y	ENSMUSG00000020717.20	Pecam1	chr11	protein_coding	platelet/endothelial cell adhesion molecule 1
known_NIR_2300	chr11	106545988;106552850	106552828;106562568	-	106545988	106562568	cassetteExon	ENSMUST00000080853.11	known	0.62	6.5	4	7;6	4	y	0.33	5.5	11	5;6	11	y	0.50	17.0	17	18;16	17	y	0.41	5.5	8	5;6	8	y	0.58	25.0	18	30;20	18	y	0.78	10.5	3	12;9	3	y	0.50	20.0	20	20;20	20	y	0.52	7.5	7	7;8	7	y	0.80	8.0	2	8;8	2	y	0.41	5.5	8	6;5	8	y	0.57	6.5	5	7;6	5	y	0.41	8.5	12	9;8	12	y	ENSMUSG00000020717.20	Pecam1	chr11	protein_coding	platelet/endothelial cell adhesion molecule 1
known_NIR_2301	chr11	106545988;106562624	106562568;106570375	-	106545988	106570375	cassetteExon	ENSMUST00000103069.10	known	0.33	6.5	13	4;9	13	y	0.67	12.0	6	11;13	6	y	0.50	27.0	27	17;37	27	y	0.54	9.5	8	8;11	8	y	0.58	29.0	21	18;40	21	y	0.44	7.0	9	3;11	9	y	0.61	33.5	21	20;47	21	y	0.60	7.5	5	7;8	5	y	0.56	5.0	4	2;8	4	y	0.55	12.0	10	8;16	10	y	0.63	8.5	5	5;12	5	y	0.68	15.0	7	12;18	7	y	ENSMUSG00000020717.20	Pecam1	chr11	protein_coding	platelet/endothelial cell adhesion molecule 1
known_NIR_2302	chr11	106668387	106669543	-	106668387	106669785	A5SS	ENSMUST00000021060.6	known	0.00	0	6	0	6	n	0.33	2	4	2	4	n	0.33	2	4	2	4	n	0.45	5	6	5	6	y	0.43	9	12	9	12	y	0.00	0	1	0	1	n	0.20	4	16	4	16	y	0.33	1	2	1	2	n	0.33	2	4	2	4	n	0.12	2	14	2	14	y	0.23	3	10	3	10	y	0.32	6	13	6	13	y	ENSMUSG00000020718.13	Polg2	chr11	protein_coding	polymerase (DNA directed), gamma 2, accessory subunit
known_NIR_2303	chr11	106668387	106669910	-	106668387	106669543	A5SS	ENSMUST00000127061.8	known	1.00	12	0	12	0	n	0.71	5	2	5	2	n	0.67	4	2	4	2	n	0.77	17	5	17	5	y	0.59	13	9	13	9	y	-	-	-	-	-	-	0.73	11	4	11	4	y	0.67	2	1	2	1	n	0.87	13	2	13	2	y	0.87	13	2	13	2	y	0.77	10	3	10	3	y	0.68	13	6	13	6	y	ENSMUSG00000020718.13	Polg2	chr11	protein_coding	polymerase (DNA directed), gamma 2, accessory subunit
known_NIR_2304	chr11	106668387	106669910	-	106668387	106669785	A5SS	ENSMUST00000021060.6	known	0.67	12	6	12	6	y	0.56	5	4	5	4	n	0.50	4	4	4	4	n	0.74	17	6	17	6	y	0.52	13	12	13	12	y	0.00	0	1	0	1	n	0.41	11	16	11	16	y	0.50	2	2	2	2	n	0.76	13	4	13	4	y	0.48	13	14	13	14	y	0.50	10	10	10	10	y	0.50	13	13	13	13	y	ENSMUSG00000020718.13	Polg2	chr11	protein_coding	polymerase (DNA directed), gamma 2, accessory subunit
known_NIR_2305	chr11	106668387;106669633	106669543;106669910	-	106668387	106669910	cassetteExon	ENSMUST00000155107.8	known	0.08	1.0	12	0;2	12	n	0.33	2.5	5	2;3	5	y	0.27	1.5	4	2;1	4	n	0.15	3.0	17	5;1	17	n	0.26	4.5	13	9;0	13	n	-	-	-	-	-	-	0.21	3.0	11	4;2	11	y	0.20	0.5	2	1;0	2	n	0.07	1.0	13	2;0	13	n	0.10	1.5	13	2;1	13	n	0.13	1.5	10	3;0	10	n	0.19	3.0	13	6;0	13	n	ENSMUSG00000020718.13	Polg2	chr11	protein_coding	polymerase (DNA directed), gamma 2, accessory subunit
known_NIR_2306	chr11	106673519	106674257	-	106673519	106674785	A5SS	ENSMUST00000021062.12	known	0.00	0	345	0	345	n	0.01	2	249	2	249	y	0.00	1	740	1	740	n	0.00	0	401	0	401	n	0.00	0	612	0	612	n	0.00	0	304	0	304	n	0.00	0	511	0	511	n	0.00	0	261	0	261	n	0.00	0	408	0	408	n	0.00	0	582	0	582	n	0.00	0	443	0	443	n	0.00	0	577	0	577	n	ENSMUSG00000020719.15	Ddx5	chr11	protein_coding	DEAD box helicase 5
known_NIR_2307	chr11	106679285	106679525	-	106679285	106679842	A5SS	ENSMUST00000129585.8	known	0.30	6	14	6	14	y	0.75	3	1	3	1	n	0.26	6	17	6	17	y	0.33	13	27	13	27	y	0.37	15	26	15	26	y	0.29	4	10	4	10	y	0.36	10	18	10	18	y	0.22	4	14	4	14	y	0.38	5	8	5	8	y	0.45	13	16	13	16	y	0.29	6	15	6	15	y	0.32	13	28	13	28	y	ENSMUSG00000020719.15	Ddx5	chr11	protein_coding	DEAD box helicase 5
known_NIR_2308	chr11	106692404;106695947	106695819;106697062	+	106692404	106697062	cassetteExon	ENSMUST00000103068.10	known	1.00	9.5	0	9;10	0	n	1.00	6.5	0	10;3	0	n	1.00	6.5	0	6;7	0	n	1.00	8.0	0	12;4	0	n	1.00	4.5	0	5;4	0	n	1.00	3.5	0	3;4	0	n	1.00	10.5	0	14;7	0	n	1.00	7.5	0	5;10	0	n	1.00	5.0	0	6;4	0	n	0.88	7.5	1	3;12	1	n	1.00	8.5	0	8;9	0	n	0.81	8.5	2	10;7	2	y	ENSMUSG00000018372.14	Cep95	chr11	protein_coding	centrosomal protein 95
known_NIR_2309	chr11	106759494;106759934	106759823;106762328	-	106759494	106762328	cassetteExon	ENSMUST00000103067.10	known	0.09	2.0	20	2;2	20	y	0.31	4.0	9	3;5	9	y	0.21	8.0	30	7;9	30	y	0.32	10.0	21	9;11	21	y	0.32	11.5	25	9;14	25	y	0.49	10.5	11	6;15	11	y	0.21	11.0	41	8;14	41	y	0.22	12.0	42	13;11	42	y	0.33	5.5	11	7;4	11	y	0.30	14.0	32	12;16	32	y	0.30	7.0	16	5;9	16	y	0.21	7.0	26	9;5	26	y	ENSMUSG00000018363.17	Smurf2	chr11	protein_coding	SMAD specific E3 ubiquitin protein ligase 2
known_NIR_2310	chr11	106762436;106766765	106766727;106811007	-	106762436	106811007	cassetteExon	ENSMUST00000103067.10	known	0.76	9.5	3	10;9	3	y	0.83	5.0	1	8;2	1	n	1.00	23.5	0	30;17	0	n	0.78	14.5	4	19;10	4	y	0.96	21.5	1	28;15	1	n	0.90	9.0	1	9;9	1	n	0.96	21.5	1	28;15	1	n	1.00	15.5	0	22;9	0	n	1.00	9.0	0	11;7	0	n	1.00	23.0	0	33;13	0	n	0.91	10.5	1	13;8	1	n	0.88	14.5	2	19;10	2	y	ENSMUSG00000018363.17	Smurf2	chr11	protein_coding	SMAD specific E3 ubiquitin protein ligase 2
known_NIR_2311	chr11	106888161	106889189	-	106888161	106890185	A5SS	ENSMUST00000018506.13	known	0.00	0	100	0	100	n	0.00	0	50	0	50	n	0.00	0	135	0	135	n	0.00	0	122	0	122	n	0.00	0	139	0	139	n	0.00	0	45	0	45	n	0.02	2	109	2	109	y	0.00	0	83	0	83	n	0.00	0	103	0	103	n	0.00	0	105	0	105	n	0.00	0	101	0	101	n	0.00	0	91	0	91	n	ENSMUSG00000018362.15	Kpna2	chr11	protein_coding	karyopherin (importin) alpha 2
known_NIR_2312	chr11	106888161	106889572	-	106888161	106890185	A5SS	ENSMUST00000018506.13	known	0.01	1	100	1	100	n	0.00	0	50	0	50	n	0.00	0	135	0	135	n	0.02	2	122	2	122	y	0.01	2	139	2	139	y	0.00	0	45	0	45	n	0.01	1	109	1	109	n	0.00	0	83	0	83	n	0.00	0	103	0	103	n	0.00	0	105	0	105	n	0.00	0	101	0	101	n	0.00	0	91	0	91	n	ENSMUSG00000018362.15	Kpna2	chr11	protein_coding	karyopherin (importin) alpha 2
known_NIR_2313	chr11	106888161	106890185	-	106888140	106890185	A3SS	ENSMUST00000145331.8	known	1.00	100	0	100	0	n	1.00	50	0	50	0	n	0.95	135	7	135	7	y	0.98	122	3	122	3	y	1.00	139	0	139	0	n	1.00	45	0	45	0	n	1.00	109	0	109	0	n	0.95	83	4	83	4	y	1.00	103	0	103	0	n	1.00	105	0	105	0	n	0.97	101	3	101	3	y	1.00	91	0	91	0	n	ENSMUSG00000018362.15	Kpna2	chr11	protein_coding	karyopherin (importin) alpha 2
known_NIR_2314	chr11	106919094	106919189	+	106919094	106919192	A3SS	ENSMUST00000140447.4	known	0.50	3	3	3	3	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.11	2	17	2	17	y	0.10	1	9	1	9	n	0.00	0	7	0	7	n	0.10	1	9	1	9	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.10	1	9	1	9	n	ENSMUSG00000078607.7	1810010H24Rik	chr11	protein_coding	RIKEN cDNA 1810010H24 gene
known_NIR_2315	chr11	106927416	106931052	-	106926665	106931052	A3SS	ENSMUST00000057892.15	known	0.39	11	17	11	17	y	0.46	12	14	12	14	y	0.29	9	22	9	22	y	0.44	11	14	11	14	y	0.31	11	24	11	24	y	0.26	5	14	5	14	y	0.62	29	18	29	18	y	0.50	8	8	8	8	y	0.30	7	16	7	16	y	0.32	11	23	11	23	y	0.25	5	15	5	15	y	0.34	15	29	15	29	y	ENSMUSG00000040481.18	Bptf	chr11	protein_coding	bromodomain PHD finger transcription factor
known_NIR_2316	chr11	106934651;106935491	106935318;106937826	-	106934651	106937826	cassetteExon	ENSMUST00000057892.15	known	0.69	18.0	8	11;25	8	y	0.59	10.0	7	10;10	7	y	0.61	22.0	14	13;31	14	y	0.35	9.0	17	5;13	17	y	0.60	27.5	18	21;34	18	y	0.38	8.0	13	5;11	13	y	0.68	17.0	8	13;21	8	y	0.51	9.5	9	8;11	9	y	0.50	12.0	12	12;12	12	y	0.38	15.5	25	18;13	25	y	0.59	10.0	7	9;11	7	y	0.62	19.5	12	10;29	12	y	ENSMUSG00000040481.18	Bptf	chr11	protein_coding	bromodomain PHD finger transcription factor
known_NIR_2317	chr11	106986016	106986542	-	106973526	106986542	A3SS	ENSMUST00000057892.15	known	0.67	4	2	4	2	n	0.50	1	1	1	1	n	0.28	7	18	7	18	y	0.60	3	2	3	2	n	0.50	7	7	7	7	y	0.14	1	6	1	6	n	0.42	5	7	5	7	y	0.64	7	4	7	4	y	0.00	0	1	0	1	n	0.55	11	9	11	9	y	0.50	1	1	1	1	n	0.23	3	10	3	10	y	ENSMUSG00000040481.18	Bptf	chr11	protein_coding	bromodomain PHD finger transcription factor
known_NIR_2318	chr11	107064287	107064430	-	107064227	107064430	A3SS	ENSMUST00000106757.8	known	0.90	27	3	27	3	y	1.00	17	0	17	0	n	0.92	34	3	34	3	y	0.97	31	1	31	1	n	0.92	36	3	36	3	y	0.95	18	1	18	1	n	0.94	32	2	32	2	y	1.00	18	0	18	0	n	1.00	19	0	19	0	n	1.00	34	0	34	0	n	0.74	17	6	17	6	y	0.90	44	5	44	5	y	ENSMUSG00000018433.15	Nol11	chr11	protein_coding	nucleolar protein 11
known_NIR_2319	chr11	107103484;107107622	107107504;107117057	-	107103484	107117057	cassetteExon	ENSMUST00000040380.13	known	1.00	20.0	0	16;24	0	n	0.89	15.5	2	17;14	2	y	1.00	34.5	0	31;38	0	n	1.00	25.0	0	15;35	0	n	0.81	21.0	5	18;24	5	y	0.89	8.0	1	8;8	1	n	0.61	15.5	10	16;15	10	y	0.68	8.5	4	6;11	4	y	0.69	11.0	5	7;15	5	y	1.00	36.5	0	26;47	0	n	0.88	21.5	3	23;20	3	y	0.85	23.0	4	21;25	4	y	ENSMUSG00000040430.19	Pitpnc1	chr11	protein_coding	phosphatidylinositol transfer protein, cytoplasmic 1
known_NIR_2320	chr11	107228386	107238915	-	107228386	107360717	A5SS	ENSMUST00000103064.10	known	0.00	0	18	0	18	n	0.00	0	11	0	11	n	0.03	1	30	1	30	n	0.00	0	17	0	17	n	0.00	0	35	0	35	n	0.00	0	7	0	7	n	0.08	2	22	2	22	y	0.11	1	8	1	8	n	0.00	0	15	0	15	n	0.00	0	24	0	24	n	0.00	0	15	0	15	n	0.00	0	19	0	19	n	ENSMUSG00000040430.19	Pitpnc1	chr11	protein_coding	phosphatidylinositol transfer protein, cytoplasmic 1
known_NIR_2321	chr11	107440227	107465764	+	107440227;107446401	107446345;107465764	ES	ENSMUST00000141730.8	known	0.00	0	1.5	0	1;2	n	0.00	0	1.0	0	2;0	n	0.50	1	1.0	1	1;1	n	0.29	2	5.0	2	5;5	y	0.33	5	10.0	5	8;12	y	0.55	3	2.5	3	2;3	n	0.73	4	1.5	4	1;2	n	0.18	1	4.5	1	4;5	n	0.57	2	1.5	2	1;2	n	0.20	1	4.0	1	5;3	n	-	-	-	-	-	-	0.00	0	4.0	0	4;4	n	ENSMUSG00000020721.17	Helz	chr11	protein_coding	helicase with zinc finger domain
known_NIR_2322	chr11	107517540	107518176	+	107517540	107518179	A3SS	ENSMUST00000100305.8	known	0.33	2	4	2	4	n	0.43	3	4	3	4	n	0.29	5	12	5	12	y	0.22	2	7	2	7	n	0.33	2	4	2	4	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.20	2	8	2	8	y	0.60	3	2	3	2	n	0.30	3	7	3	7	y	0.60	3	2	3	2	n	0.40	2	3	2	3	n	ENSMUSG00000020721.17	Helz	chr11	protein_coding	helicase with zinc finger domain
known_NIR_2323	chr11	108812019	108813978	+	108811387	108813978	A5SS	ENSMUST00000052915.14	known	0.67	2	1	2	1	n	1.00	2	0	2	0	n	0.50	1	1	1	1	n	1.00	5	0	5	0	n	0.25	2	6	2	6	n	-	-	-	-	-	-	0.43	3	4	3	4	n	0.50	3	3	3	3	n	0.00	0	4	0	4	n	0.60	6	4	6	4	y	1.00	1	0	1	0	n	0.60	3	2	3	2	n	ENSMUSG00000000142.16	Axin2	chr11	protein_coding	axin 2
known_NIR_2324	chr11	109256588	109283172	+	109256588	109271041	3pMXE	ENSMUST00000106702.4	known	0.62	15	9	15	9	y	0.44	7	9	7	9	y	0.58	45	32	45	32	y	0.68	17	8	17	8	y	0.79	33	9	33	9	y	0.61	20	13	20	13	y	0.74	26	9	26	9	y	0.67	24	12	24	12	y	0.62	25	15	25	15	y	0.58	36	26	36	26	y	0.50	18	18	18	18	y	0.57	27	20	27	20	y	ENSMUSG00000020611.15	Gna13	chr11	protein_coding	guanine nucleotide binding protein, alpha 13
known_NIR_2325	chr11	109324879	109327389	+	109324879	109325406	A3SS&ES	ENSMUST00000020929.17	known	0.00	0	53	0	53	n	0.02	1	54	1	54	n	0.00	0	85	0	85	n	0.06	3	48	3	48	y	0.00	0	66	0	66	n	0.00	0	36	0	36	n	0.00	0	63	0	63	n	0.00	0	35	0	35	n	0.00	0	39	0	39	n	0.03	2	76	2	76	y	0.02	1	56	1	56	n	0.03	2	71	2	71	y	ENSMUSG00000020610.18	Amz2	chr11	protein_coding	archaelysin family metallopeptidase 2
known_NIR_2326	chr11	109324879	109327389	+	109324879;109325582	109325406;109327389	ES	ENSMUST00000092500.11	known	0.00	0	50.5	0	53;48	n	0.02	1	57.5	1	54;61	n	0.00	0	76.0	0	85;67	n	0.06	3	47.5	3	48;47	y	0.00	0	67.0	0	66;68	n	0.00	0	32.5	0	36;29	n	0.00	0	64.5	0	63;66	n	0.00	0	32.0	0	35;29	n	0.00	0	38.0	0	39;37	n	0.03	2	77.5	2	76;79	y	0.02	1	54.0	1	56;52	n	0.03	2	67.0	2	71;63	y	ENSMUSG00000020610.18	Amz2	chr11	protein_coding	archaelysin family metallopeptidase 2
known_NIR_2327	chr11	109354374	109357102	-	109354374	109363764	A5SS	ENSMUST00000070872.13	known	1.00	4	0	4	0	n	0.60	3	2	3	2	n	0.44	11	14	11	14	y	0.00	0	3	0	3	n	0.83	5	1	5	1	n	0.25	2	6	2	6	n	0.47	7	8	7	8	y	0.83	5	1	5	1	n	0.00	0	2	0	2	n	0.50	3	3	3	3	n	-	-	-	-	-	-	1.00	7	0	7	0	n	ENSMUSG00000041920.15	Slc16a6	chr11	protein_coding	solute carrier family 16 (monocarboxylic acid transporters), member 6
known_NIR_2328	chr11	109354374	109357102	-	109354374	109364074	A5SS	ENSMUST00000070152.12	known	1.00	4	0	4	0	n	1.00	3	0	3	0	n	0.85	11	2	11	2	y	-	-	-	-	-	-	0.83	5	1	5	1	n	1.00	2	0	2	0	n	0.78	7	2	7	2	n	0.71	5	2	5	2	n	-	-	-	-	-	-	1.00	3	0	3	0	n	-	-	-	-	-	-	1.00	7	0	7	0	n	ENSMUSG00000041920.15	Slc16a6	chr11	protein_coding	solute carrier family 16 (monocarboxylic acid transporters), member 6
known_NIR_2329	chr11	109354374	109363350	-	109354374	109357102	5pMXE	ENSMUST00000032206.9	known	0.43	3	4	3	4	n	0.25	1	3	1	3	n	0.35	6	11	6	11	y	1.00	1	0	1	0	n	0.44	4	5	4	5	n	0.60	3	2	3	2	n	0.30	3	7	3	7	y	0.17	1	5	1	5	n	1.00	3	0	3	0	n	0.40	2	3	2	3	n	1.00	3	0	3	0	n	0.36	4	7	4	7	y	ENSMUSG00000041920.15	Slc16a6	chr11	protein_coding	solute carrier family 16 (monocarboxylic acid transporters), member 6
known_NIR_2330	chr11	109354374	109363350	-	109354374	109363764	A5SS	ENSMUST00000070872.13	known	1.00	3	0	3	0	n	0.33	1	2	1	2	n	0.30	6	14	6	14	y	0.25	1	3	1	3	n	0.80	4	1	4	1	n	0.33	3	6	3	6	n	0.27	3	8	3	8	y	0.50	1	1	1	1	n	0.60	3	2	3	2	n	0.40	2	3	2	3	n	1.00	3	0	3	0	n	1.00	4	0	4	0	n	ENSMUSG00000041920.15	Slc16a6	chr11	protein_coding	solute carrier family 16 (monocarboxylic acid transporters), member 6
known_NIR_2331	chr11	109354374	109363764	-	109354374	109364074	A5SS	ENSMUST00000070152.12	known	-	-	-	-	-	-	1.00	2	0	2	0	n	0.88	14	2	14	2	y	1.00	3	0	3	0	n	0.50	1	1	1	1	n	1.00	6	0	6	0	n	0.80	8	2	8	2	y	0.33	1	2	1	2	n	1.00	2	0	2	0	n	1.00	3	0	3	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041920.15	Slc16a6	chr11	protein_coding	solute carrier family 16 (monocarboxylic acid transporters), member 6
known_NIR_2332	chr11	109434654	109438840	+	109426163	109438840	A5SS	ENSMUST00000020928.13	known	0.48	11	12	11	12	y	0.36	10	18	10	18	y	0.40	25	38	25	38	y	0.22	5	18	5	18	y	0.36	14	25	14	25	y	0.34	13	25	13	25	y	0.22	10	36	10	36	y	0.20	9	35	9	35	y	0.33	6	12	6	12	y	0.46	16	19	16	19	y	0.31	5	11	5	11	y	0.19	6	26	6	26	y	ENSMUSG00000020604.14	Arsg	chr11	protein_coding	arylsulfatase G
known_NIR_2333	chr11	109541899	109544605	+	109541450	109544605	A5SS	ENSMUST00000106677.8	known	0.94	187	13	187	13	y	0.97	151	5	151	5	y	0.94	377	24	377	24	y	0.97	233	8	233	8	y	0.96	272	10	272	10	y	0.96	191	8	191	8	y	0.94	246	17	246	17	y	0.94	155	10	155	10	y	0.99	130	1	130	1	n	0.99	290	4	290	4	y	0.99	154	2	154	2	y	1.00	265	0	265	0	n	ENSMUSG00000020612.17	Prkar1a	chr11	protein_coding	protein kinase, cAMP dependent regulatory, type I, alpha
known_NIR_2334	chr11	109564390	109565434	-	109564390	109565449	A5SS	ENSMUST00000155559.8	known	0.00	0	112	0	112	n	0.01	1	151	1	151	n	0.06	10	147	10	147	y	0.02	2	115	2	115	y	0.01	1	154	1	154	n	0.00	0	98	0	98	n	0.02	3	173	3	173	y	0.03	3	90	3	90	y	0.01	1	77	1	77	n	0.00	0	155	0	155	n	0.00	0	132	0	132	n	0.01	1	115	1	115	n	ENSMUSG00000020614.14	Fam20a	chr11	protein_coding	FAM20A, golgi associated secretory pathway pseudokinase
known_NIR_2335	chr11	109566803	109567980	-	109566778	109567980	A3SS	ENSMUST00000155559.8	known	0.08	8	87	8	87	y	0.07	8	103	8	103	y	0.03	5	142	5	142	y	0.11	8	65	8	65	y	0.12	14	100	14	100	y	0.00	0	72	0	72	n	0.09	14	141	14	141	y	0.09	8	85	8	85	y	0.06	5	83	5	83	y	0.03	4	130	4	130	y	0.08	8	90	8	90	y	0.03	3	104	3	104	y	ENSMUSG00000020614.14	Fam20a	chr11	protein_coding	FAM20A, golgi associated secretory pathway pseudokinase
known_NIR_2336	chr11	109864644	109865816	-	109864644;109865519	109865334;109865816	ES	ENSMUST00000020948.15	known	0.00	0	10.0	0	11;9	n	0.00	0	6.0	0	5;7	n	0.06	1	15.5	1	20;11	n	0.08	2	23.5	2	25;22	y	0.05	2	38.0	2	42;34	y	0.00	0	13.0	0	11;15	n	0.00	0	15.5	0	14;17	n	0.14	2	12.5	2	17;8	y	0.00	0	26.0	0	28;24	n	0.03	1	34.0	1	35;33	n	0.00	0	10.5	0	11;10	n	0.10	4	35.5	4	45;26	y	ENSMUSG00000020620.15	Abca8b	chr11	protein_coding	ATP-binding cassette, sub-family A (ABC1), member 8b
known_NIR_2337	chr11	109982446	109986689	-	109982446	109986730	A5SS	ENSMUST00000100287.9	known	0.27	3	8	3	8	y	0.00	0	9	0	9	n	1.00	2	0	2	0	n	0.67	14	7	14	7	y	0.27	3	8	3	8	y	-	-	-	-	-	-	0.62	13	8	13	8	y	0.50	1	1	1	1	n	0.57	12	9	12	9	y	0.70	23	10	23	10	y	0.68	13	6	13	6	y	0.58	25	18	25	18	y	ENSMUSG00000041828.16	Abca8a	chr11	protein_coding	ATP-binding cassette, sub-family A (ABC1), member 8a
known_NIR_2338	chr11	110370261	110373365	+	110290251	110373365	A5SS	ENSMUST00000020949.12	known	0.11	1	8	1	8	n	0.33	1	2	1	2	n	0.50	1	1	1	1	n	0.82	9	2	9	2	y	0.33	2	4	2	4	n	1.00	3	0	3	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.62	5	3	5	3	n	0.67	8	4	8	4	y	0.71	5	2	5	2	n	0.00	0	1	0	1	n	ENSMUSG00000020623.12	Map2k6	chr11	protein_coding	mitogen-activated protein kinase kinase 6
known_NIR_2339	chr11	113260724	113354777	-	113260724	113354798	A5SS	ENSMUST00000071539.10	known	0.05	2	36	2	36	y	0.14	3	19	3	19	y	0.24	18	56	18	56	y	0.15	7	41	7	41	y	0.23	28	94	28	94	y	0.14	11	65	11	65	y	0.14	10	62	10	62	y	0.11	7	57	7	57	y	0.10	5	43	5	43	y	0.21	13	49	13	49	y	0.17	7	34	7	34	y	0.09	6	60	6	60	y	ENSMUSG00000041654.16	Slc39a11	chr11	protein_coding	solute carrier family 39 (metal ion transporter), member 11
known_NIR_2340	chr11	113354921;113413831	113413727;113414292	-	113354921	113414292	cassetteExon	ENSMUST00000071539.10	known	0.03	1.0	38	2;0	38	n	0.00	0.0	28	0;0	28	n	0.05	4.5	83	2;7	83	y	0.00	0.0	57	0;0	57	n	0.01	1.0	98	1;1	98	n	0.01	0.5	66	1;0	66	n	0.02	1.0	49	2;0	49	n	0.01	0.5	57	0;1	57	n	0.01	0.5	36	0;1	36	n	0.00	0.0	63	0;0	63	n	0.00	0.0	32	0;0	32	n	0.00	0.0	46	0;0	46	n	ENSMUSG00000041654.16	Slc39a11	chr11	protein_coding	solute carrier family 39 (metal ion transporter), member 11
known_NIR_2341	chr11	113452950	113456412	-	113452950	113456502	A5SS	ENSMUST00000071539.10	known	0.11	3	24	3	24	y	0.06	1	16	1	16	n	0.06	3	48	3	48	y	0.10	2	18	2	18	y	0.07	3	43	3	43	y	0.05	2	39	2	39	y	0.06	3	46	3	46	y	0.05	2	35	2	35	y	0.04	1	23	1	23	n	0.00	0	19	0	19	n	0.00	0	22	0	22	n	0.00	0	32	0	32	n	ENSMUSG00000041654.16	Slc39a11	chr11	protein_coding	solute carrier family 39 (metal ion transporter), member 11
known_NIR_2342	chr11	113452950	113482608	-	113452950	113456502	5pMXE	ENSMUST00000071539.10	known	0.08	2	24	2	24	y	0.11	2	16	2	16	y	0.00	0	48	0	48	n	0.00	0	18	0	18	n	0.07	3	43	3	43	y	0.00	0	39	0	39	n	0.06	3	46	3	46	y	0.03	1	35	1	35	n	0.04	1	23	1	23	n	0.05	1	19	1	19	n	0.04	1	22	1	22	n	0.24	10	32	10	32	y	ENSMUSG00000041654.16	Slc39a11	chr11	protein_coding	solute carrier family 39 (metal ion transporter), member 11
known_NIR_2343	chr11	113452950	113504210	-	113452950	113456502	5pMXE	ENSMUST00000071539.10	known	0.00	0	24	0	24	n	0.00	0	16	0	16	n	0.00	0	48	0	48	n	0.05	1	18	1	18	n	0.04	2	43	2	43	y	0.00	0	39	0	39	n	0.00	0	46	0	46	n	0.00	0	35	0	35	n	0.00	0	23	0	23	n	0.00	0	19	0	19	n	0.04	1	22	1	22	n	0.06	2	32	2	32	y	ENSMUSG00000041654.16	Slc39a11	chr11	protein_coding	solute carrier family 39 (metal ion transporter), member 11
known_NIR_2344	chr11	113452950	113540768	-	113452950	113456502	5pMXE	ENSMUST00000071539.10	known	0.08	2	24	2	24	y	0.30	7	16	7	16	y	0.00	0	48	0	48	n	0.14	3	18	3	18	y	0.02	1	43	1	43	n	0.03	1	39	1	39	n	0.04	2	46	2	46	y	0.05	2	35	2	35	y	0.04	1	23	1	23	n	0.00	0	19	0	19	n	0.00	0	22	0	22	n	0.03	1	32	1	32	n	ENSMUSG00000041654.16	Slc39a11	chr11	protein_coding	solute carrier family 39 (metal ion transporter), member 11
known_NIR_2345	chr11	113550203	113551791	+	113550203	113551769	A3SS	ENSMUST00000018805.15	known	0.00	0	48	0	48	n	0.02	1	46	1	46	n	0.09	3	29	3	29	y	0.05	2	38	2	38	y	0.02	1	52	1	52	n	0.00	0	36	0	36	n	0.02	1	50	1	50	n	0.04	1	25	1	25	n	0.03	1	35	1	35	n	0.02	1	52	1	52	n	0.03	1	37	1	37	n	0.00	0	41	0	41	n	ENSMUSG00000018661.18	Cog1	chr11	protein_coding	component of oligomeric golgi complex 1
known_NIR_2346	chr11	113552044	113557585	+	113552044	113553033	3pMXE	ENSMUST00000018805.15	known	0.00	0	34	0	34	n	0.00	0	35	0	35	n	0.00	0	21	0	21	n	0.00	0	40	0	40	n	0.00	0	32	0	32	n	0.00	0	17	0	17	n	0.00	0	29	0	29	n	0.00	0	20	0	20	n	0.00	0	32	0	32	n	0.03	2	56	2	56	y	0.00	0	30	0	30	n	0.00	0	45	0	45	n	ENSMUSG00000018661.18	Cog1	chr11	protein_coding	component of oligomeric golgi complex 1
known_NIR_2347	chr11	113552044;113552519	113552485;113553033	+	113552044	113553033	cassetteExon	ENSMUST00000018805.15	known	0.00	0.0	34	0;0	34	n	0.03	1.0	35	2;0	35	n	0.00	0.0	21	0;0	21	n	0.06	2.5	40	5;0	40	n	0.00	0.0	32	0;0	32	n	0.06	1.0	17	1;1	17	n	0.09	3.0	29	2;4	29	y	0.00	0.0	20	0;0	20	n	0.00	0.0	32	0;0	32	n	0.01	0.5	56	0;1	56	n	0.10	3.5	30	5;2	30	y	0.00	0.0	45	0;0	45	n	ENSMUSG00000018661.18	Cog1	chr11	protein_coding	component of oligomeric golgi complex 1
known_NIR_2348	chr11	113575537	113578600	+	113575636	113578600	A5SS	ENSMUST00000042227.15	known	0.80	8	2	8	2	y	0.80	4	1	4	1	n	1.00	14	0	14	0	n	0.70	7	3	7	3	y	0.57	4	3	4	3	n	0.50	2	2	2	2	n	1.00	9	0	9	0	n	0.71	5	2	5	2	n	1.00	4	0	4	0	n	0.56	5	4	5	4	n	1.00	4	0	4	0	n	0.86	6	1	6	1	n	ENSMUSG00000041623.18	D11Wsu47e	chr11	protein_coding	DNA segment, Chr 11, Wayne State University 47, expressed
known_NIR_2349	chr11	113575537	113578600	+	113576097	113578600	5pMXE	ENSMUST00000153732.2	known	0.80	8	2	8	2	y	0.67	4	2	4	2	n	0.54	14	12	14	12	y	0.64	7	4	7	4	y	0.57	4	3	4	3	n	0.67	2	1	2	1	n	0.69	9	4	9	4	y	0.56	5	4	5	4	n	0.67	4	2	4	2	n	0.50	5	5	5	5	y	0.67	4	2	4	2	n	0.67	6	3	6	3	n	ENSMUSG00000041623.18	D11Wsu47e	chr11	protein_coding	DNA segment, Chr 11, Wayne State University 47, expressed
known_NIR_2350	chr11	113590808	113592882	-	113590739	113592882	A3SS	ENSMUST00000106617.8	known	0.73	8	3	8	3	y	0.86	18	3	18	3	y	1.00	5	0	5	0	n	0.95	20	1	20	1	n	0.78	14	4	14	4	y	0.75	3	1	3	1	n	0.82	9	2	9	2	y	1.00	7	0	7	0	n	1.00	9	0	9	0	n	0.82	23	5	23	5	y	0.60	12	8	12	8	y	0.75	6	2	6	2	n	ENSMUSG00000018727.20	Cpsf4l	chr11	protein_coding	cleavage and polyadenylation specific factor 4-like
known_NIR_2351	chr11	113590808	113593239	-	113590808;113592921	113592882;113593239	ES	ENSMUST00000173655.8	known	0.32	5	10.5	5	8;13	y	0.30	6	14.0	6	18;10	y	0.38	3	5.0	3	5;5	y	0.29	8	19.5	8	20;19	y	0.27	5	13.5	5	14;13	y	0.00	0	4.5	0	3;6	n	0.34	5	9.5	5	9;10	y	0.13	1	6.5	1	7;6	n	0.18	2	9.0	2	9;9	y	0.20	6	24.5	6	23;26	y	0.22	4	14.5	4	12;17	y	0.21	2	7.5	2	6;9	y	ENSMUSG00000018727.20	Cpsf4l	chr11	protein_coding	cleavage and polyadenylation specific factor 4-like
known_NIR_2352	chr11	113590808	113593239	-	113592921	113593239	A3SS&ES	ENSMUST00000106617.8	known	0.28	5	13	5	13	y	0.38	6	10	6	10	y	0.38	3	5	3	5	n	0.30	8	19	8	19	y	0.28	5	13	5	13	y	0.00	0	6	0	6	n	0.33	5	10	5	10	y	0.14	1	6	1	6	n	0.18	2	9	2	9	y	0.19	6	26	6	26	y	0.19	4	17	4	17	y	0.18	2	9	2	9	y	ENSMUSG00000018727.20	Cpsf4l	chr11	protein_coding	cleavage and polyadenylation specific factor 4-like
known_NIR_2353	chr11	113593332	113594097	-	113593335	113594097	A3SS	ENSMUST00000106617.8	known	1.00	11	0	11	0	n	1.00	13	0	13	0	n	0.83	5	1	5	1	n	1.00	30	0	30	0	n	0.89	16	2	16	2	y	1.00	2	0	2	0	n	0.88	15	2	15	2	y	0.89	8	1	8	1	n	1.00	13	0	13	0	n	0.96	22	1	22	1	n	1.00	19	0	19	0	n	0.89	8	1	8	1	n	ENSMUSG00000018727.20	Cpsf4l	chr11	protein_coding	cleavage and polyadenylation specific factor 4-like
known_NIR_2354	chr11	113620491	113630105	-	113620491	113641556	A5SS	ENSMUST00000106616.2	known	0.25	4	12	4	12	y	0.07	1	14	1	14	n	0.05	2	35	2	35	y	0.14	4	25	4	25	y	0.15	4	23	4	23	y	0.00	0	17	0	17	n	0.10	3	28	3	28	y	0.05	1	21	1	21	n	0.18	3	14	3	14	y	0.20	9	37	9	37	y	0.22	6	21	6	21	y	0.12	3	23	3	23	y	ENSMUSG00000041598.8	Cdc42ep4	chr11	protein_coding	CDC42 effector protein (Rho GTPase binding) 4
known_NIR_2355	chr11	113620491	113630105	-	113620491	113642514	A5SS	ENSMUST00000053536.5	known	0.12	4	29	4	29	y	0.06	1	17	1	17	n	0.09	2	21	2	21	y	0.13	4	26	4	26	y	0.07	4	52	4	52	y	0.00	0	16	0	16	n	0.10	3	27	3	27	y	0.06	1	15	1	15	n	0.23	3	10	3	10	y	0.17	9	43	9	43	y	0.20	6	24	6	24	y	0.08	3	35	3	35	y	ENSMUSG00000041598.8	Cdc42ep4	chr11	protein_coding	CDC42 effector protein (Rho GTPase binding) 4
known_NIR_2356	chr11	113620491	113641780	-	113620491	113641556	A5SS	ENSMUST00000106616.2	known	0.00	0	12	0	12	n	0.07	1	14	1	14	n	0.00	0	35	0	35	n	0.00	0	25	0	25	n	0.00	0	23	0	23	n	0.00	0	17	0	17	n	0.00	0	28	0	28	n	0.00	0	21	0	21	n	0.00	0	14	0	14	n	0.03	1	37	1	37	n	0.00	0	21	0	21	n	0.08	2	23	2	23	y	ENSMUSG00000041598.8	Cdc42ep4	chr11	protein_coding	CDC42 effector protein (Rho GTPase binding) 4
known_NIR_2357	chr11	113620491	113641780	-	113620491	113642514	A5SS	ENSMUST00000053536.5	known	0.00	0	29	0	29	n	0.06	1	17	1	17	n	0.00	0	21	0	21	n	0.00	0	26	0	26	n	0.00	0	52	0	52	n	0.00	0	16	0	16	n	0.00	0	27	0	27	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.02	1	43	1	43	n	0.00	0	24	0	24	n	0.05	2	35	2	35	y	ENSMUSG00000041598.8	Cdc42ep4	chr11	protein_coding	CDC42 effector protein (Rho GTPase binding) 4
known_NIR_2358	chr11	113620491	113642514	-	113620491	113641556	5pMXE	ENSMUST00000106616.2	known	0.71	29	12	29	12	y	0.55	17	14	17	14	y	0.38	21	35	21	35	y	0.51	26	25	26	25	y	0.69	52	23	52	23	y	0.48	16	17	16	17	y	0.49	27	28	27	28	y	0.42	15	21	15	21	y	0.42	10	14	10	14	y	0.54	43	37	43	37	y	0.53	24	21	24	21	y	0.60	35	23	35	23	y	ENSMUSG00000041598.8	Cdc42ep4	chr11	protein_coding	CDC42 effector protein (Rho GTPase binding) 4
known_NIR_2359	chr11	114559452	114559607	+	114559435	114559607	A5SS	ENSMUST00000106602.10	known	0.25	149	448	149	448	y	0.22	149	522	149	522	y	0.20	176	712	176	712	y	0.25	138	418	138	418	y	0.24	206	649	206	649	y	0.21	118	456	118	456	y	0.23	197	667	197	667	y	0.25	110	331	110	331	y	0.23	134	455	134	455	y	0.19	142	595	142	595	y	0.24	167	526	167	526	y	0.18	128	601	128	601	y	ENSMUSG00000057322.13	Rpl38	chr11	protein_coding	ribosomal protein L38
known_NIR_2360	chr11	114559511	114559607	+	114559435	114559607	A5SS	ENSMUST00000106602.10	known	0.04	18	448	18	448	y	0.03	16	522	16	522	y	0.04	28	712	28	712	y	0.04	19	418	19	418	y	0.03	17	649	17	649	y	0.03	14	456	14	456	y	0.03	22	667	22	667	y	0.03	11	331	11	331	y	0.02	11	455	11	455	y	0.03	19	595	19	595	y	0.03	14	526	14	526	y	0.02	15	601	15	601	y	ENSMUSG00000057322.13	Rpl38	chr11	protein_coding	ribosomal protein L38
known_NIR_2361	chr11	114559511	114559607	+	114559452	114559607	A5SS	ENSMUST00000077915.10	known	0.11	18	149	18	149	y	0.10	16	149	16	149	y	0.14	28	176	28	176	y	0.12	19	138	19	138	y	0.08	17	206	17	206	y	0.11	14	118	14	118	y	0.10	22	197	22	197	y	0.09	11	110	11	110	y	0.08	11	134	11	134	y	0.12	19	142	19	142	y	0.08	14	167	14	167	y	0.10	15	128	15	128	y	ENSMUSG00000057322.13	Rpl38	chr11	protein_coding	ribosomal protein L38
known_NIR_2362	chr11	114742399	114754293	+	114742712	114754293	A5SS	ENSMUST00000122967.3	known	0.00	0	28	0	28	n	0.00	0	8	0	8	n	0.00	0	20	0	20	n	0.00	0	53	0	53	n	0.00	0	49	0	49	n	0.00	0	15	0	15	n	0.00	0	25	0	25	n	0.00	0	23	0	23	n	0.07	2	27	2	27	y	0.00	0	34	0	34	n	0.05	1	21	1	21	n	0.02	1	43	1	43	n	ENSMUSG00000051043.17	Gprc5c	chr11	protein_coding	G protein-coupled receptor, family C, group 5, member C
known_NIR_2363	chr11	114742712	114754293	+	114742069	114754293	A5SS	ENSMUST00000133245.2	known	1.00	28	0	28	0	n	1.00	8	0	8	0	n	1.00	20	0	20	0	n	1.00	53	0	53	0	n	0.92	49	4	49	4	y	0.88	15	2	15	2	y	0.96	25	1	25	1	n	0.96	23	1	23	1	n	1.00	27	0	27	0	n	1.00	34	0	34	0	n	0.95	21	1	21	1	n	1.00	43	0	43	0	n	ENSMUSG00000051043.17	Gprc5c	chr11	protein_coding	G protein-coupled receptor, family C, group 5, member C
known_NIR_2364	chr11	114742812	114754293	+	114742069	114754293	A5SS	ENSMUST00000133245.2	known	1.00	15	0	15	0	n	1.00	10	0	10	0	n	1.00	11	0	11	0	n	1.00	22	0	22	0	n	0.88	29	4	29	4	y	0.85	11	2	11	2	y	0.94	16	1	16	1	n	0.92	12	1	12	1	n	1.00	15	0	15	0	n	1.00	18	0	18	0	n	0.93	13	1	13	1	n	1.00	29	0	29	0	n	ENSMUSG00000051043.17	Gprc5c	chr11	protein_coding	G protein-coupled receptor, family C, group 5, member C
known_NIR_2365	chr11	114742812	114754293	+	114742399	114754293	A5SS	ENSMUST00000177952.8	known	1.00	15	0	15	0	n	1.00	10	0	10	0	n	1.00	11	0	11	0	n	1.00	22	0	22	0	n	1.00	29	0	29	0	n	1.00	11	0	11	0	n	1.00	16	0	16	0	n	1.00	12	0	12	0	n	0.88	15	2	15	2	y	1.00	18	0	18	0	n	0.93	13	1	13	1	n	0.97	29	1	29	1	n	ENSMUSG00000051043.17	Gprc5c	chr11	protein_coding	G protein-coupled receptor, family C, group 5, member C
known_NIR_2366	chr11	114742812	114754293	+	114742712	114754293	A5SS	ENSMUST00000122967.3	known	0.35	15	28	15	28	y	0.56	10	8	10	8	y	0.35	11	20	11	20	y	0.29	22	53	22	53	y	0.37	29	49	29	49	y	0.42	11	15	11	15	y	0.39	16	25	16	25	y	0.34	12	23	12	23	y	0.36	15	27	15	27	y	0.35	18	34	18	34	y	0.38	13	21	13	21	y	0.40	29	43	29	43	y	ENSMUSG00000051043.17	Gprc5c	chr11	protein_coding	G protein-coupled receptor, family C, group 5, member C
known_NIR_2367	chr11	114742812	114754293	+	114743099	114754293	A5SS	ENSMUST00000021071.14	known	0.68	15	7	15	7	y	0.45	10	12	10	12	y	0.50	11	11	11	11	y	0.63	22	13	22	13	y	0.67	29	14	29	14	y	0.58	11	8	11	8	y	0.44	16	20	16	20	y	0.71	12	5	12	5	y	0.68	15	7	15	7	y	0.47	18	20	18	20	y	0.59	13	9	13	9	y	0.66	29	15	29	15	y	ENSMUSG00000051043.17	Gprc5c	chr11	protein_coding	G protein-coupled receptor, family C, group 5, member C
known_NIR_2368	chr11	114743099	114754293	+	114742069	114754293	A5SS	ENSMUST00000133245.2	known	1.00	7	0	7	0	n	1.00	12	0	12	0	n	1.00	11	0	11	0	n	1.00	13	0	13	0	n	0.78	14	4	14	4	y	0.80	8	2	8	2	y	0.95	20	1	20	1	n	0.83	5	1	5	1	n	1.00	7	0	7	0	n	1.00	20	0	20	0	n	0.90	9	1	9	1	n	1.00	15	0	15	0	n	ENSMUSG00000051043.17	Gprc5c	chr11	protein_coding	G protein-coupled receptor, family C, group 5, member C
known_NIR_2369	chr11	114743099	114754293	+	114742712	114754293	A5SS	ENSMUST00000122967.3	known	0.20	7	28	7	28	y	0.60	12	8	12	8	y	0.35	11	20	11	20	y	0.20	13	53	13	53	y	0.22	14	49	14	49	y	0.35	8	15	8	15	y	0.44	20	25	20	25	y	0.18	5	23	5	23	y	0.21	7	27	7	27	y	0.37	20	34	20	34	y	0.30	9	21	9	21	y	0.26	15	43	15	43	y	ENSMUSG00000051043.17	Gprc5c	chr11	protein_coding	G protein-coupled receptor, family C, group 5, member C
known_NIR_2370	chr11	114759529	114761147	+	114759471	114761147	A5SS	ENSMUST00000053361.12	known	0.00	0	57	0	57	n	0.14	10	64	10	64	y	0.04	2	54	2	54	y	0.06	5	77	5	77	y	0.01	1	113	1	113	n	0.08	3	35	3	35	y	0.00	0	97	0	97	n	0.00	0	40	0	40	n	0.09	5	49	5	49	y	0.04	4	92	4	92	y	0.03	2	62	2	62	y	0.03	4	115	4	115	y	ENSMUSG00000051043.17	Gprc5c	chr11	protein_coding	G protein-coupled receptor, family C, group 5, member C
known_NIR_2371	chr11	114784420	114785496	+	114784420	114785484	A3SS	ENSMUST00000106582.9	known	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.18	2	9	2	9	y	0.00	0	9	0	9	n	0.20	2	8	2	8	y	0.25	1	3	1	3	n	0.50	2	2	2	2	n	0.27	3	8	3	8	y	0.00	0	6	0	6	n	0.12	2	14	2	14	y	0.17	1	5	1	5	n	ENSMUSG00000034652.13	Cd300a	chr11	protein_coding	CD300A molecule
known_NIR_2372	chr11	114891899	114892313	-	114891811	114892313	A3SS	ENSMUST00000092464.10	known	0.11	2	17	2	17	y	0.13	2	13	2	13	y	0.00	0	10	0	10	n	0.50	6	6	6	6	y	0.22	2	7	2	7	n	0.50	4	4	4	4	n	0.14	2	12	2	12	y	0.40	4	6	4	6	y	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.20	2	8	2	8	y	0.00	0	9	0	9	n	ENSMUSG00000044811.14	Cd300c2	chr11	protein_coding	CD300C molecule 2
known_NIR_2373	chr11	115011244	115016930	-	115011244	115015074	A5SS&ES	ENSMUST00000106561.8	known	-	-	-	-	-	-	0.00	0	4	0	4	n	0.18	3	14	3	14	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.22	2	7	2	7	n	0.17	1	5	1	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000047798.16	Cd300lf	chr11	protein_coding	CD300 molecule like family member F
known_NIR_2374	chr11	115011244	115016937	-	115011244	115015074	A5SS	ENSMUST00000146254.2	known	1.00	2	0	2	0	n	0.00	0	4	0	4	n	0.12	2	14	2	14	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.22	2	7	2	7	n	0.38	3	5	3	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000047798.16	Cd300lf	chr11	protein_coding	CD300 molecule like family member F
known_NIR_2375	chr11	115011244	115016937	-	115011244;115015182	115015074;115016937	ES	ENSMUST00000051264.14	known	1.00	2	0.0	2	0;0	n	0.00	0	2.0	0	4;0	n	0.14	2	12.0	2	14;10	y	0.00	0	1.5	0	3;0	n	0.00	0	1.5	0	2;1	n	0.36	2	3.5	2	7;0	n	0.55	3	2.5	3	5;0	n	0.00	0	0.5	0	1;0	n	0.00	0	0.5	0	0;1	n	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	0.00	0	0.5	0	1;0	n	ENSMUSG00000047798.16	Cd300lf	chr11	protein_coding	CD300 molecule like family member F
known_NIR_2376	chr11	115011244	115016937	-	115011244;115015203	115015074;115016937	ES	ENSMUST00000106561.8	known	0.67	2	1.0	2	0;2	n	0.00	0	2.0	0	4;0	n	0.17	2	10.0	2	14;6	y	0.00	0	1.5	0	3;0	n	0.00	0	1.5	0	2;1	n	0.31	2	4.5	2	7;2	y	0.55	3	2.5	3	5;0	n	0.00	0	1.0	0	1;1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	0.00	0	1.5	0	1;2	n	ENSMUSG00000047798.16	Cd300lf	chr11	protein_coding	CD300 molecule like family member F
known_NIR_2377	chr11	115015182	115016937	-	115015203	115016937	A3SS	ENSMUST00000106561.8	known	0.00	0	2	0	2	n	-	-	-	-	-	-	0.62	10	6	10	6	y	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000047798.16	Cd300lf	chr11	protein_coding	CD300 molecule like family member F
known_NIR_2378	chr11	115077663	115077945	-	115077660	115077945	A3SS	ENSMUST00000103038.8	known	0.78	82	23	82	23	y	0.76	76	24	76	24	y	0.76	84	26	84	26	y	0.86	77	13	77	13	y	0.79	105	28	105	28	y	0.79	66	18	66	18	y	0.80	97	25	97	25	y	0.82	55	12	55	12	y	0.77	72	22	72	22	y	0.71	92	37	92	37	y	0.75	70	23	70	23	y	0.79	63	17	63	17	y	ENSMUSG00000015542.18	Nat9	chr11	protein_coding	N-acetyltransferase 9 (GCN5-related, putative)
known_NIR_2379	chr11	115077663	115077945	-	115077663	115077956	A5SS	ENSMUST00000103039.2	known	1.00	82	0	82	0	n	0.99	76	1	76	1	n	1.00	84	0	84	0	n	1.00	77	0	77	0	n	0.97	105	3	105	3	y	1.00	66	0	66	0	n	1.00	97	0	97	0	n	0.98	55	1	55	1	n	1.00	72	0	72	0	n	1.00	92	0	92	0	n	1.00	70	0	70	0	n	1.00	63	0	63	0	n	ENSMUSG00000015542.18	Nat9	chr11	protein_coding	N-acetyltransferase 9 (GCN5-related, putative)
known_NIR_2380	chr11	115160722;115160925	115160841;115161149	-	115160722	115161149	cassetteExon	ENSMUST00000155130.8	known	0.74	48.0	17	46;50	17	y	0.70	44.0	19	42;46	19	y	0.78	17.5	5	18;17	5	y	0.83	45.5	9	44;47	9	y	0.76	44.0	14	50;38	14	y	0.85	22.0	4	19;25	4	y	0.77	61.5	18	62;61	18	y	0.86	31.5	5	33;30	5	y	0.84	42.5	8	35;50	8	y	0.78	68.0	19	67;69	19	y	0.88	64.0	9	67;61	9	y	0.79	57.0	15	56;58	15	y	ENSMUSG00000018861.9	Fdxr	chr11	protein_coding	ferredoxin reductase
known_NIR_2381	chr11	115162771	115163013	-	115162825	115163013	A3SS	ENSMUST00000021078.3	known	0.17	7	34	7	34	y	0.13	4	27	4	27	y	0.05	1	21	1	21	n	0.15	6	33	6	33	y	0.02	1	61	1	61	n	0.12	2	15	2	15	y	0.12	5	38	5	38	y	0.06	1	16	1	16	n	0.09	4	41	4	41	y	0.11	5	42	5	42	y	0.10	4	38	4	38	y	0.04	2	46	2	46	y	ENSMUSG00000018861.9	Fdxr	chr11	protein_coding	ferredoxin reductase
known_NIR_2382	chr11	115162825	115163013	-	115162801	115163013	A3SS	ENSMUST00000155130.8	known	1.00	34	0	34	0	n	1.00	27	0	27	0	n	0.95	21	1	21	1	n	1.00	33	0	33	0	n	0.97	61	2	61	2	y	1.00	15	0	15	0	n	1.00	38	0	38	0	n	1.00	16	0	16	0	n	0.93	41	3	41	3	y	1.00	42	0	42	0	n	1.00	38	0	38	0	n	0.90	46	5	46	5	y	ENSMUSG00000018861.9	Fdxr	chr11	protein_coding	ferredoxin reductase
known_NIR_2383	chr11	115187530	115188320	-	115187530	115188140	A5SS	ENSMUST00000056153.8	known	0.11	11	87	11	87	y	0.07	4	54	4	54	y	0.08	5	56	5	56	y	0.16	19	98	19	98	y	0.06	9	151	9	151	y	0.16	8	42	8	42	y	0.11	12	97	12	97	y	0.11	9	73	9	73	y	0.07	6	83	6	83	y	0.10	18	164	18	164	y	0.06	5	81	5	81	y	0.05	8	144	8	144	y	ENSMUSG00000044788.11	Fads6	chr11	protein_coding	fatty acid desaturase domain family, member 6
known_NIR_2384	chr11	115250637	115251148	-	115250634	115251148	A3SS	ENSMUST00000044152.13	known	0.00	0	1	0	1	n	-	-	-	-	-	-	0.23	9	31	9	31	y	0.00	0	1	0	1	n	0.43	3	4	3	4	n	0.00	0	4	0	4	n	0.67	2	1	2	1	n	0.14	1	6	1	6	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000034586.15	Hid1	chr11	protein_coding	HID1 domain containing
known_NIR_2385	chr11	115294699	115297377	+	115294786	115297377	A5SS	ENSMUST00000153983.8	known	0.18	19	88	19	88	y	0.14	17	102	17	102	y	0.11	14	114	14	114	y	0.13	16	108	16	108	y	0.10	18	163	18	163	y	0.09	9	93	9	93	y	0.09	14	144	14	144	y	0.13	11	73	11	73	y	0.14	16	101	16	101	y	0.08	11	126	11	126	y	0.10	15	140	15	140	y	0.07	11	158	11	158	y	ENSMUSG00000018858.16	Mrpl58	chr11	protein_coding	mitochondrial ribosomal protein L58
known_NIR_2386	chr11	115297413	115300886	+	115297413	115300306	3pMXE	ENSMUST00000128632.8	known	0.01	1	111	1	111	n	0.00	0	143	0	143	n	0.01	1	123	1	123	n	0.00	0	129	0	129	n	0.00	0	182	0	182	n	0.00	0	110	0	110	n	0.02	3	159	3	159	y	0.00	0	85	0	85	n	0.00	0	113	0	113	n	0.02	3	156	3	156	y	0.00	0	156	0	156	n	0.00	0	164	0	164	n	ENSMUSG00000018858.16	Mrpl58	chr11	protein_coding	mitochondrial ribosomal protein L58
known_NIR_2387	chr11	115297413	115300886	+	115297413;115300365	115300306;115300886	ES	ENSMUST00000153983.8	known	0.01	1	129.5	1	111;148	n	0.00	0	156.5	0	143;170	n	0.01	1	122.5	1	123;122	n	0.00	0	129.5	0	129;130	n	0.00	0	185.0	0	182;188	n	0.00	0	106.5	0	110;103	n	0.02	3	168.0	3	159;177	y	0.00	0	83.5	0	85;82	n	0.00	0	116.5	0	113;120	n	0.02	3	178.5	3	156;201	y	0.00	0	159.0	0	156;162	n	0.00	0	154.5	0	164;145	n	ENSMUSG00000018858.16	Mrpl58	chr11	protein_coding	mitochondrial ribosomal protein L58
known_NIR_2388	chr11	115297413	115300886	+	115300365	115300886	A5SS&ES	ENSMUST00000021079.14	known	0.01	1	148	1	148	n	0.00	0	170	0	170	n	0.01	1	122	1	122	n	0.00	0	130	0	130	n	0.00	0	188	0	188	n	0.00	0	103	0	103	n	0.02	3	177	3	177	y	0.00	0	82	0	82	n	0.00	0	120	0	120	n	0.01	3	201	3	201	y	0.00	0	162	0	162	n	0.00	0	145	0	145	n	ENSMUSG00000018858.16	Mrpl58	chr11	protein_coding	mitochondrial ribosomal protein L58
known_NIR_2389	chr11	115309342	115309525	-	115309342	115310018	A5SS	ENSMUST00000106537.8	known	0.75	3	1	3	1	n	0.00	0	5	0	5	n	0.33	2	4	2	4	n	0.00	0	5	0	5	n	0.75	3	1	3	1	n	-	-	-	-	-	-	0.62	5	3	5	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.17	1	5	1	5	n	0.20	2	8	2	8	y	1.00	1	0	1	0	n	ENSMUSG00000034566.11	Atp5h	chr11	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D
known_NIR_2390	chr11	115309342	115309525	-	115309342	115310718	A5SS	ENSMUST00000043931.9	known	0.01	3	496	3	496	y	0.00	0	564	0	564	n	0.00	2	445	2	445	y	0.00	0	522	0	522	n	0.00	3	650	3	650	y	0.00	0	298	0	298	n	0.01	5	689	5	689	y	0.00	0	281	0	281	n	0.00	0	573	0	573	n	0.00	1	785	1	785	n	0.00	2	637	2	637	y	0.00	1	772	1	772	n	ENSMUSG00000034566.11	Atp5h	chr11	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D
known_NIR_2391	chr11	115309342	115310718	-	115309342;115310119	115310018;115310718	ES	ENSMUST00000106537.8	known	1.00	496	1.5	496	1;2	n	0.99	564	3.5	564	5;2	y	0.99	445	3.5	445	4;3	y	1.00	522	2.5	522	5;0	n	1.00	650	0.5	650	1;0	n	1.00	298	0.0	298	0;0	n	1.00	689	2.0	689	3;1	n	1.00	281	0.0	281	0;0	n	1.00	573	0.0	573	0;0	n	1.00	785	3.0	785	5;1	n	0.99	637	4.0	637	8;0	n	1.00	772	0.0	772	0;0	n	ENSMUSG00000034566.11	Atp5h	chr11	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D
known_NIR_2392	chr11	115309376	115310718	-	115309342	115310718	A3SS	ENSMUST00000043931.9	known	0.00	0	496	0	496	n	0.00	0	564	0	564	n	0.00	0	445	0	445	n	0.00	0	522	0	522	n	0.00	1	650	1	650	n	0.00	0	298	0	298	n	0.00	3	689	3	689	y	0.00	0	281	0	281	n	0.01	3	573	3	573	y	0.01	4	785	4	785	y	0.00	2	637	2	637	y	0.00	1	772	1	772	n	ENSMUSG00000034566.11	Atp5h	chr11	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D
known_NIR_2393	chr11	115320231	115320461	+	115320231	115321139	A3SS	ENSMUST00000103035.10	known	0.07	3	42	3	42	y	0.19	9	38	9	38	y	0.05	1	21	1	21	n	0.07	2	25	2	25	y	0.18	8	37	8	37	y	0.13	2	13	2	13	y	0.04	2	50	2	50	y	0.07	2	26	2	26	y	0.30	7	16	7	16	y	0.25	16	49	16	49	y	0.10	3	27	3	27	y	0.07	3	43	3	43	y	ENSMUSG00000016940.19	Kctd2	chr11	protein_coding	potassium channel tetramerisation domain containing 2
known_NIR_2394	chr11	115320231	115320712	+	115320231	115321139	A3SS	ENSMUST00000103035.10	known	0.02	1	42	1	42	n	0.05	2	38	2	38	y	0.09	2	21	2	21	y	0.14	4	25	4	25	y	0.12	5	37	5	37	y	0.07	1	13	1	13	n	0.09	5	50	5	50	y	0.07	2	26	2	26	y	0.16	3	16	3	16	y	0.09	5	49	5	49	y	0.04	1	27	1	27	n	0.04	2	43	2	43	y	ENSMUSG00000016940.19	Kctd2	chr11	protein_coding	potassium channel tetramerisation domain containing 2
known_NIR_2395	chr11	115320231;115320608	115320461;115320712	+	115320231	115320712	cassetteExon	ENSMUST00000123345.2	known	0.83	5.0	1	3;7	1	n	0.85	11.5	2	9;14	2	y	0.75	6.0	2	1;11	2	n	0.60	6.0	4	2;10	4	y	0.55	6.0	5	8;4	5	y	0.67	2.0	1	2;2	1	n	0.41	3.5	5	2;5	5	y	0.64	3.5	2	2;5	2	n	0.74	8.5	3	7;10	3	y	0.72	13.0	5	16;10	5	y	0.82	4.5	1	3;6	1	n	0.86	12.5	2	3;22	2	y	ENSMUSG00000016940.19	Kctd2	chr11	protein_coding	potassium channel tetramerisation domain containing 2
known_NIR_2396	chr11	115353633;115355883	115355740;115363497	+	115353633	115363497	cassetteExon	ENSMUST00000106532.4	known	1.00	11.5	0	15;8	0	n	1.00	11.5	0	17;6	0	n	0.00	0.0	1	0;0	1	n	0.91	10.5	1	15;6	1	n	1.00	19.0	0	35;3	0	n	0.71	5.0	2	7;3	2	y	1.00	10.5	0	16;5	0	n	0.71	2.5	1	2;3	1	n	0.89	8.0	1	14;2	1	n	0.78	14.5	4	20;9	4	y	0.75	6.0	2	7;5	2	y	0.82	9.0	2	13;5	2	y	ENSMUSG00000045775.16	Slc16a5	chr11	protein_coding	solute carrier family 16 (monocarboxylic acid transporters), member 5
known_NIR_2397	chr11	115355883	115360059	+	115355883	115360162	A3SS	ENSMUST00000092445.12	known	0.75	3	1	3	1	n	0.60	3	2	3	2	n	0.00	0	2	0	2	n	1.00	5	0	5	0	n	0.29	2	5	2	5	n	-	-	-	-	-	-	0.93	14	1	14	1	n	-	-	-	-	-	-	0.71	5	2	5	2	n	0.70	14	6	14	6	y	1.00	3	0	3	0	n	0.75	6	2	6	2	n	ENSMUSG00000045775.16	Slc16a5	chr11	protein_coding	solute carrier family 16 (monocarboxylic acid transporters), member 5
known_NIR_2398	chr11	115355883	115363497	+	115355883	115360059	3pMXE	ENSMUST00000153466.2	known	0.73	8	3	8	3	y	0.67	6	3	6	3	n	-	-	-	-	-	-	0.55	6	5	6	5	y	0.60	3	2	3	2	n	1.00	3	0	3	0	n	0.26	5	14	5	14	y	1.00	3	0	3	0	n	0.29	2	5	2	5	n	0.39	9	14	9	14	y	0.62	5	3	5	3	n	0.45	5	6	5	6	y	ENSMUSG00000045775.16	Slc16a5	chr11	protein_coding	solute carrier family 16 (monocarboxylic acid transporters), member 5
known_NIR_2399	chr11	115355883	115363497	+	115355883	115360162	3pMXE	ENSMUST00000125251.8	known	0.89	8	1	8	1	n	0.75	6	2	6	2	n	0.00	0	2	0	2	n	1.00	6	0	6	0	n	0.38	3	5	3	5	n	1.00	3	0	3	0	n	0.83	5	1	5	1	n	1.00	3	0	3	0	n	0.50	2	2	2	2	n	0.60	9	6	9	6	y	1.00	5	0	5	0	n	0.71	5	2	5	2	n	ENSMUSG00000045775.16	Slc16a5	chr11	protein_coding	solute carrier family 16 (monocarboxylic acid transporters), member 5
known_NIR_2400	chr11	115355883	115363497	+	115355883;115360974	115360059;115363497	ES	ENSMUST00000140739.2	known	0.64	8	4.5	8	3;6	y	0.63	6	3.5	6	3;4	y	0.00	0	0.5	0	0;1	n	0.46	6	7.0	6	5;9	y	0.29	3	7.5	3	2;13	y	1.00	3	0.0	3	0;0	n	0.29	5	12.5	5	14;11	y	0.55	3	2.5	3	0;5	n	0.29	2	5.0	2	5;5	y	0.42	9	12.5	9	14;11	y	0.38	5	8.0	5	3;13	y	0.17	5	24.0	5	6;42	y	ENSMUSG00000045775.16	Slc16a5	chr11	protein_coding	solute carrier family 16 (monocarboxylic acid transporters), member 5
known_NIR_2401	chr11	115355883	115363497	+	115355883;115360974	115360162;115363497	ES	ENSMUST00000092445.12	known	0.70	8	3.5	8	1;6	n	0.67	6	3.0	6	2;4	y	0.00	0	1.5	0	2;1	n	0.57	6	4.5	6	0;9	n	0.25	3	9.0	3	5;13	y	1.00	3	0.0	3	0;0	n	0.45	5	6.0	5	1;11	n	0.55	3	2.5	3	0;5	n	0.36	2	3.5	2	2;5	n	0.51	9	8.5	9	6;11	y	0.43	5	6.5	5	0;13	n	0.19	5	22.0	5	2;42	y	ENSMUSG00000045775.16	Slc16a5	chr11	protein_coding	solute carrier family 16 (monocarboxylic acid transporters), member 5
known_NIR_2402	chr11	115360974	115363497	+	115353633	115363497	A5SS	ENSMUST00000106532.4	known	1.00	6	0	6	0	n	1.00	4	0	4	0	n	0.50	1	1	1	1	n	0.90	9	1	9	1	n	1.00	13	0	13	0	n	0.00	0	2	0	2	n	1.00	11	0	11	0	n	0.83	5	1	5	1	n	0.83	5	1	5	1	n	0.73	11	4	11	4	y	0.87	13	2	13	2	y	0.95	42	2	42	2	y	ENSMUSG00000045775.16	Slc16a5	chr11	protein_coding	solute carrier family 16 (monocarboxylic acid transporters), member 5
known_NIR_2403	chr11	115360974	115363497	+	115355883	115363497	A5SS	ENSMUST00000133636.8	known	0.43	6	8	6	8	y	0.40	4	6	4	6	y	1.00	1	0	1	0	n	0.60	9	6	9	6	y	0.81	13	3	13	3	y	0.00	0	3	0	3	n	0.69	11	5	11	5	y	0.62	5	3	5	3	n	0.71	5	2	5	2	n	0.55	11	9	11	9	y	0.72	13	5	13	5	y	0.89	42	5	42	5	y	ENSMUSG00000045775.16	Slc16a5	chr11	protein_coding	solute carrier family 16 (monocarboxylic acid transporters), member 5
known_NIR_2404	chr11	115381570	115381679	-	115381595	115381679	A3SS	ENSMUST00000106530.8	known	0.98	130	2	130	2	y	0.96	133	6	133	6	y	0.95	78	4	78	4	y	0.99	124	1	124	1	n	0.98	129	3	129	3	y	0.99	90	1	90	1	n	0.98	124	3	124	3	y	0.97	106	3	106	3	y	1.00	88	0	88	0	n	0.98	128	2	128	2	y	0.99	126	1	126	1	n	0.97	111	3	111	3	y	ENSMUSG00000020736.13	Nt5c	chr11	protein_coding	5',3'-nucleotidase, cytosolic
known_NIR_2405	chr11	115391549	115392831	-	115391510	115392831	A3SS	ENSMUST00000021083.7	known	0.00	0	57	0	57	n	0.03	2	77	2	77	y	0.02	1	55	1	55	n	0.00	0	51	0	51	n	0.00	0	99	0	99	n	0.03	2	68	2	68	y	0.00	0	94	0	94	n	0.00	0	43	0	43	n	0.00	0	52	0	52	n	0.00	0	55	0	55	n	0.00	0	62	0	62	n	0.00	0	43	0	43	n	ENSMUSG00000020737.13	Jpt1	chr11	protein_coding	Jupiter microtubule associated homolog 1
known_NIR_2406	chr11	115394000	115404853	-	115394000	115405046	A5SS	ENSMUST00000021083.7	known	0.00	0	46	0	46	n	0.00	0	57	0	57	n	0.00	0	42	0	42	n	0.00	0	27	0	27	n	0.03	2	61	2	61	y	0.00	0	37	0	37	n	0.00	0	69	0	69	n	0.00	0	42	0	42	n	0.00	0	26	0	26	n	0.00	0	51	0	51	n	0.00	0	45	0	45	n	0.00	0	47	0	47	n	ENSMUSG00000020737.13	Jpt1	chr11	protein_coding	Jupiter microtubule associated homolog 1
known_NIR_2407	chr11	115414595	115425378	-	115414595	115421172	A5SS&ES	ENSMUST00000021084.10	known	0.00	0	315	0	315	n	0.00	1	343	1	343	n	0.00	1	385	1	385	n	0.01	2	317	2	317	y	0.00	0	374	0	374	n	0.02	5	203	5	203	y	0.00	1	420	1	420	n	0.01	1	189	1	189	n	0.00	1	271	1	271	n	0.00	1	401	1	401	n	0.00	0	352	0	352	n	0.01	4	403	4	403	y	ENSMUSG00000020738.17	Sumo2	chr11	protein_coding	small ubiquitin-like modifier 2
known_NIR_2408	chr11	115414595	115425378	-	115414595;115421243	115421172;115425378	ES	ENSMUST00000121185.8	known	0.00	0	286.5	0	315;258	n	0.00	1	292.0	1	343;241	n	0.00	1	379.5	1	385;374	n	0.01	2	289.5	2	317;262	y	0.00	0	358.5	0	374;343	n	0.03	5	192.5	5	203;182	y	0.00	1	388.5	1	420;357	n	0.01	1	183.0	1	189;177	n	0.00	1	251.5	1	271;232	n	0.00	1	355.0	1	401;309	n	0.00	0	315.5	0	352;279	n	0.01	4	369.5	4	403;336	y	ENSMUSG00000020738.17	Sumo2	chr11	protein_coding	small ubiquitin-like modifier 2
known_NIR_2409	chr11	115414595	115425378	-	115421243	115425378	3pMXE	ENSMUST00000140844.2	known	0.00	0	258	0	258	n	0.00	1	241	1	241	n	0.00	1	374	1	374	n	0.01	2	262	2	262	y	0.00	0	343	0	343	n	0.03	5	182	5	182	y	0.00	1	357	1	357	n	0.01	1	177	1	177	n	0.00	1	232	1	232	n	0.00	1	309	1	309	n	0.00	0	279	0	279	n	0.01	4	336	4	336	y	ENSMUSG00000020738.17	Sumo2	chr11	protein_coding	small ubiquitin-like modifier 2
known_NIR_2410	chr11	115421243	115425382	-	115421243	115425378	A5SS	ENSMUST00000121185.8	known	0.00	0	258	0	258	n	0.00	0	241	0	241	n	0.00	0	374	0	374	n	0.00	0	262	0	262	n	0.00	0	343	0	343	n	0.00	0	182	0	182	n	0.00	0	357	0	357	n	0.00	0	177	0	177	n	0.00	0	232	0	232	n	0.00	0	309	0	309	n	0.01	3	279	3	279	y	0.00	0	336	0	336	n	ENSMUSG00000020738.17	Sumo2	chr11	protein_coding	small ubiquitin-like modifier 2
known_NIR_2411	chr11	115425509	115426924	-	115425509	115426605	5pMXE	ENSMUST00000121185.8	known	0.99	253	2	253	2	y	1.00	234	0	234	0	n	1.00	291	0	291	0	n	0.99	287	2	287	2	y	0.99	300	3	300	3	y	0.98	155	3	155	3	y	0.99	318	2	318	2	y	1.00	184	0	184	0	n	1.00	198	0	198	0	n	0.99	286	3	286	3	y	0.99	237	3	237	3	y	0.99	266	2	266	2	y	ENSMUSG00000020738.17	Sumo2	chr11	protein_coding	small ubiquitin-like modifier 2
known_NIR_2412	chr11	115477246	115477822	-	115477311	115477822	A3SS	ENSMUST00000019135.14	known	0.00	0	9	0	9	n	0.14	1	6	1	6	n	0.00	0	14	0	14	n	0.00	0	18	0	18	n	0.00	0	17	0	17	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.10	1	9	1	9	n	0.00	0	16	0	16	n	0.00	0	14	0	14	n	0.14	2	12	2	12	y	ENSMUSG00000020740.14	Gga3	chr11	protein_coding	golgi associated, gamma adaptin ear containing, ARF binding protein 3
known_NIR_2413	chr11	115482520	115483258	-	115482579	115483258	A3SS	ENSMUST00000019135.14	known	0.15	2	11	2	11	y	0.29	2	5	2	5	n	0.07	1	14	1	14	n	0.20	2	8	2	8	y	0.15	3	17	3	17	y	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.27	4	11	4	11	y	0.00	0	8	0	8	n	0.36	5	9	5	9	y	ENSMUSG00000020740.14	Gga3	chr11	protein_coding	golgi associated, gamma adaptin ear containing, ARF binding protein 3
known_NIR_2414	chr11	115499922	115500106	-	115499979	115500106	A3SS	ENSMUST00000106507.9	known	0.07	12	164	12	164	y	0.10	16	140	16	140	y	0.10	19	172	19	172	y	0.08	16	176	16	176	y	0.07	15	201	15	201	y	0.08	11	128	11	128	y	0.05	15	308	15	308	y	0.06	9	145	9	145	y	0.06	8	125	8	125	y	0.07	14	190	14	190	y	0.08	10	121	10	121	y	0.04	5	123	5	123	y	ENSMUSG00000020743.16	Mif4gd	chr11	protein_coding	MIF4G domain containing
known_NIR_2415	chr11	115500415	115502729	-	115500474	115502729	A3SS	ENSMUST00000106507.9	known	0.02	5	216	5	216	y	0.01	2	238	2	238	y	0.01	2	245	2	245	y	0.01	2	265	2	265	y	0.02	7	382	7	382	y	0.00	0	154	0	154	n	0.01	4	324	4	324	y	0.01	2	201	2	201	y	0.02	4	157	4	157	y	0.01	3	247	3	247	y	0.01	2	167	2	167	y	0.01	2	199	2	199	y	ENSMUSG00000020743.16	Mif4gd	chr11	protein_coding	MIF4G domain containing
known_NIR_2416	chr11	115500474;115501308	115501243;115502729	-	115500474	115502729	cassetteExon	ENSMUST00000106507.9	known	0.02	4.0	216	6;2	216	y	0.03	6.5	238	7;6	238	y	0.01	3.0	245	5;1	245	n	0.04	10.5	265	12;9	265	y	0.02	6.5	382	8;5	382	y	0.03	4.0	154	4;4	154	y	0.03	8.5	324	8;9	324	y	0.04	8.0	201	10;6	201	y	0.01	2.0	157	2;2	157	y	0.02	6.0	247	7;5	247	y	0.03	5.0	167	6;4	167	y	0.03	5.5	199	6;5	199	y	ENSMUSG00000020743.16	Mif4gd	chr11	protein_coding	MIF4G domain containing
known_NIR_2417	chr11	115501308	115502729	-	115500415	115502729	A3SS	ENSMUST00000137304.8	known	0.29	2	5	2	5	n	0.75	6	2	6	2	n	0.33	1	2	1	2	n	0.82	9	2	9	2	y	0.42	5	7	5	7	y	1.00	4	0	4	0	n	0.69	9	4	9	4	y	0.75	6	2	6	2	n	0.33	2	4	2	4	n	0.62	5	3	5	3	n	0.67	4	2	4	2	n	0.71	5	2	5	2	n	ENSMUSG00000020743.16	Mif4gd	chr11	protein_coding	MIF4G domain containing
known_NIR_2418	chr11	115503090	115503611	-	115502860	115503611	A3SS	ENSMUST00000124407.8	known	0.01	1	162	1	162	n	0.00	0	141	0	141	n	0.00	0	159	0	159	n	0.00	0	183	0	183	n	0.00	1	231	1	231	n	0.00	0	128	0	128	n	0.02	4	239	4	239	y	0.00	0	172	0	172	n	0.00	0	105	0	105	n	0.00	0	213	0	213	n	0.00	0	133	0	133	n	0.01	1	145	1	145	n	ENSMUSG00000020743.16	Mif4gd	chr11	protein_coding	MIF4G domain containing
known_NIR_2419	chr11	115514853	115518891	-	115514853;115515194	115515025;115518891	ES	ENSMUST00000021089.11	known	0.00	0	32.5	0	44;21	n	0.08	3	36.5	3	54;19	y	0.03	1	36.0	1	48;24	n	0.00	0	51.0	0	75;27	n	0.01	1	66.0	1	98;34	n	0.00	0	32.0	0	46;18	n	0.02	1	61.5	1	88;35	n	0.00	0	37.0	0	50;24	n	0.03	1	34.5	1	45;24	n	0.00	0	65.5	0	85;46	n	0.00	0	28.5	0	39;18	n	0.04	1	26.5	1	45;8	n	ENSMUSG00000020744.14	Slc25a19	chr11	protein_coding	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19
known_NIR_2420	chr11	115515194	115518891	-	115515194	115518463	5pMXE	ENSMUST00000154623.2	known	0.81	21	5	21	5	y	0.73	19	7	19	7	y	0.86	24	4	24	4	y	0.71	27	11	27	11	y	0.72	34	13	34	13	y	0.86	18	3	18	3	y	0.71	35	14	35	14	y	0.86	24	4	24	4	y	0.86	24	4	24	4	y	0.87	46	7	46	7	y	0.90	18	2	18	2	y	0.89	8	1	8	1	n	ENSMUSG00000020744.14	Slc25a19	chr11	protein_coding	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19
known_NIR_2421	chr11	115515194;115518625	115518463;115518891	-	115515194	115518891	cassetteExon	ENSMUST00000021089.11	known	0.11	2.5	21	5;0	21	n	0.16	3.5	19	7;0	19	n	0.08	2.0	24	4;0	24	n	0.17	5.5	27	11;0	27	n	0.18	7.5	34	13;2	34	y	0.08	1.5	18	3;0	18	n	0.17	7.0	35	14;0	35	n	0.08	2.0	24	4;0	24	n	0.08	2.0	24	4;0	24	n	0.08	4.0	46	7;1	46	n	0.05	1.0	18	2;0	18	n	0.11	1.0	8	1;1	8	n	ENSMUSG00000020744.14	Slc25a19	chr11	protein_coding	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19
known_NIR_2422	chr11	115515194;115518699	115518463;115518891	-	115515194	115518891	cassetteExon	ENSMUST00000021089.11	known	0.16	4.0	21	5;3	21	y	0.16	3.5	19	7;0	19	n	0.08	2.0	24	4;0	24	n	0.19	6.5	27	11;2	27	y	0.20	8.5	34	13;4	34	y	0.08	1.5	18	3;0	18	n	0.19	8.0	35	14;2	35	y	0.08	2.0	24	4;0	24	n	0.09	2.5	24	4;1	24	n	0.10	5.0	46	7;3	46	y	0.08	1.5	18	2;1	18	n	0.16	1.5	8	1;2	8	n	ENSMUSG00000020744.14	Slc25a19	chr11	protein_coding	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19
known_NIR_2423	chr11	115515194;115518755	115518463;115518891	-	115515194	115518891	cassetteExon	ENSMUST00000021089.11	known	0.18	4.5	21	5;4	21	y	0.16	3.5	19	7;0	19	n	0.08	2.0	24	4;0	24	n	0.17	5.5	27	11;0	27	n	0.18	7.5	34	13;2	34	y	0.08	1.5	18	3;0	18	n	0.19	8.0	35	14;2	35	y	0.08	2.0	24	4;0	24	n	0.08	2.0	24	4;0	24	n	0.08	4.0	46	7;1	46	n	0.05	1.0	18	2;0	18	n	0.24	2.5	8	1;4	8	n	ENSMUSG00000020744.14	Slc25a19	chr11	protein_coding	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19
known_NIR_2424	chr11	115536738	115537536	-	115536780	115537536	A3SS	ENSMUST00000106499.8	known	0.00	0	243	0	243	n	0.00	0	216	0	216	n	0.00	0	209	0	209	n	0.00	0	203	0	203	n	0.00	0	326	0	326	n	0.00	0	159	0	159	n	0.00	0	291	0	291	n	0.00	0	132	0	132	n	0.02	4	172	4	172	y	0.00	0	210	0	210	n	0.04	8	187	8	187	y	0.00	0	208	0	208	n	ENSMUSG00000059923.14	Grb2	chr11	protein_coding	growth factor receptor bound protein 2
known_NIR_2425	chr11	115537704	115546184	-	115540719	115546184	3pMXE	ENSMUST00000135065.2	known	0.00	0	185	0	185	n	0.00	0	121	0	121	n	0.00	0	153	0	153	n	0.01	1	172	1	172	n	0.01	2	259	2	259	y	0.00	0	110	0	110	n	0.00	0	194	0	194	n	0.00	0	123	0	123	n	0.00	0	94	0	94	n	0.00	0	160	0	160	n	0.00	0	151	0	151	n	0.00	0	137	0	137	n	ENSMUSG00000059923.14	Grb2	chr11	protein_coding	growth factor receptor bound protein 2
known_NIR_2426	chr11	115537704;115540719	115540597;115546184	-	115537704	115546184	cassetteExon	ENSMUST00000106499.8	known	1.00	171.0	0	157;185	0	n	1.00	140.5	0	160;121	0	n	1.00	145.0	0	137;153	0	n	0.99	161.0	1	150;172	1	n	0.99	227.0	2	195;259	2	y	1.00	117.5	0	125;110	0	n	1.00	209.5	0	225;194	0	n	1.00	119.0	0	115;123	0	n	1.00	104.0	0	114;94	0	n	1.00	167.5	0	175;160	0	n	1.00	150.0	0	149;151	0	n	1.00	139.5	0	142;137	0	n	ENSMUSG00000059923.14	Grb2	chr11	protein_coding	growth factor receptor bound protein 2
known_NIR_2427	chr11	115681160	115681859	+	115681160	115681793	A3SS	ENSMUST00000093912.11	known	0.38	11	18	11	18	y	0.33	7	14	7	14	y	0.33	12	24	12	24	y	0.41	17	24	17	24	y	0.27	14	37	14	37	y	0.31	10	22	10	22	y	0.22	13	47	13	47	y	0.35	13	24	13	24	y	0.33	9	18	9	18	y	0.37	21	36	21	36	y	0.50	15	15	15	15	y	0.32	9	19	9	19	y	ENSMUSG00000020747.19	Tmem94	chr11	protein_coding	transmembrane protein 94
known_NIR_2428	chr11	115703208;115703770	115703718;115704340	-	115703208	115704340	cassetteExon	ENSMUST00000041684.11	known	0.13	1.5	10	1;2	10	n	0.00	0.0	8	0;0	8	n	0.11	4.0	31	4;4	31	y	0.00	0.0	19	0;0	19	n	0.06	2.0	33	2;2	33	y	0.05	1.0	19	2;0	19	n	0.04	0.5	12	1;0	12	n	0.11	2.0	16	3;1	16	n	0.00	0.0	9	0;0	9	n	0.00	0.0	12	0;0	12	n	0.27	1.5	4	0;3	4	n	0.00	0.0	7	0;0	7	n	ENSMUSG00000034471.13	Caskin2	chr11	protein_coding	CASK-interacting protein 2
known_NIR_2429	chr11	115712921	115713409	+	115712941	115713409	A5SS	ENSMUST00000021134.10	known	0.05	1	21	1	21	n	0.00	0	21	0	21	n	0.00	0	41	0	41	n	0.00	0	21	0	21	n	0.06	2	33	2	33	y	0.10	2	18	2	18	y	0.00	0	33	0	33	n	0.00	0	13	0	13	n	0.11	2	17	2	17	y	0.00	0	27	0	27	n	0.08	2	23	2	23	y	0.00	0	33	0	33	n	ENSMUSG00000020781.15	Tsen54	chr11	protein_coding	tRNA splicing endonuclease subunit 54
known_NIR_2430	chr11	115724878	115725623	+	115715003	115725623	A5SS	ENSMUST00000103032.11	known	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	18	0	18	n	0.00	0	32	0	32	n	0.00	0	43	0	43	n	0.00	0	21	0	21	n	0.00	0	23	0	23	n	0.07	2	26	2	26	y	0.00	0	25	0	25	n	0.00	0	30	0	30	n	0.00	0	22	0	22	n	0.00	0	37	0	37	n	ENSMUSG00000020782.19	Llgl2	chr11	protein_coding	LLGL2 scribble cell polarity complex component
known_NIR_2431	chr11	115745401	115745558	+	115745401	115745638	A3SS	ENSMUST00000103032.11	known	0.09	3	31	3	31	y	0.06	3	48	3	48	y	0.18	6	27	6	27	y	0.00	0	39	0	39	n	0.00	0	53	0	53	n	0.07	2	26	2	26	y	0.02	1	52	1	52	n	0.14	4	24	4	24	y	0.02	1	50	1	50	n	0.00	0	53	0	53	n	0.06	3	48	3	48	y	0.04	2	44	2	44	y	ENSMUSG00000020782.19	Llgl2	chr11	protein_coding	LLGL2 scribble cell polarity complex component
known_NIR_2432	chr11	115745401	115745889	+	115745401;115745685	115745638;115745889	ES	ENSMUST00000103032.11	known	0.08	3	36.5	3	31;42	y	0.11	6	48.5	6	48;49	y	0.07	2	28.5	2	27;30	y	0.07	3	41.0	3	39;43	y	0.10	6	52.0	6	53;51	y	0.08	2	24.5	2	26;23	y	0.06	4	62.0	4	52;72	y	0.00	0	27.0	0	24;30	n	0.02	1	48.5	1	50;47	n	0.12	8	56.5	8	53;60	y	0.05	3	53.0	3	48;58	y	0.10	5	46.0	5	44;48	y	ENSMUSG00000020782.19	Llgl2	chr11	protein_coding	LLGL2 scribble cell polarity complex component
known_NIR_2433	chr11	115745401;115745685	115745558;115745889	+	115745401	115745889	cassetteExon	ENSMUST00000128826.2	known	0.88	22.5	3	3;42	3	y	0.81	26.0	6	3;49	6	y	0.90	18.0	2	6;30	2	y	0.88	21.5	3	0;43	3	n	0.81	25.5	6	0;51	6	n	0.86	12.5	2	2;23	2	y	0.90	36.5	4	1;72	4	n	1.00	17.0	0	4;30	0	n	0.96	24.0	1	1;47	1	n	0.79	30.0	8	0;60	8	n	0.91	30.5	3	3;58	3	y	0.83	25.0	5	2;48	5	y	ENSMUSG00000020782.19	Llgl2	chr11	protein_coding	LLGL2 scribble cell polarity complex component
known_NIR_2434	chr11	115788085;115795868	115795711;115807805	-	115788085	115807805	cassetteExon	ENSMUST00000021097.10	known	0.22	5.5	19	6;5	19	y	0.08	2.0	22	3;1	22	n	0.09	1.5	15	2;1	15	n	0.13	3.0	20	4;2	20	y	0.09	2.5	24	3;2	24	y	0.08	1.0	12	2;0	12	n	0.23	4.5	15	5;4	15	y	0.20	2.0	8	3;1	8	n	0.08	1.5	17	0;3	17	n	0.17	2.0	10	3;1	10	n	0.05	0.5	9	1;0	9	n	0.21	4.0	15	4;4	15	y	ENSMUSG00000020752.12	Recql5	chr11	protein_coding	RecQ protein-like 5
known_NIR_2435	chr11	115824607	115828836	+	115824607;115826301	115826192;115828836	ES	ENSMUST00000140991.2	known	0.00	0	69.5	0	56;83	n	0.00	0	47.5	0	35;60	n	0.00	0	98.0	0	74;122	n	0.00	0	65.5	0	57;74	n	0.02	2	80.0	2	77;83	y	0.00	0	53.5	0	43;64	n	0.00	0	79.5	0	62;97	n	0.00	0	46.0	0	35;57	n	0.00	0	67.0	0	56;78	n	0.00	0	68.0	0	62;74	n	0.00	0	65.0	0	57;73	n	0.00	0	76.5	0	76;77	n	ENSMUSG00000020755.10	Sap30bp	chr11	protein_coding	SAP30 binding protein
known_NIR_2436	chr11	115921317	115938503	+	115929609	115938503	5pMXE	ENSMUST00000150759.8	known	1.00	10	0	10	0	n	1.00	5	0	5	0	n	0.88	15	2	15	2	y	1.00	8	0	8	0	n	1.00	11	0	11	0	n	1.00	4	0	4	0	n	1.00	9	0	9	0	n	1.00	3	0	3	0	n	1.00	6	0	6	0	n	0.91	10	1	10	1	n	0.89	8	1	8	1	n	1.00	21	0	21	0	n	ENSMUSG00000020770.14	Unk	chr11	protein_coding	unkempt family zinc finger
known_NIR_2437	chr11	115943945	115944316	+	115943984	115944316	A5SS	ENSMUST00000021116.12	known	0.71	5	2	5	2	n	0.00	0	4	0	4	n	0.14	2	12	2	12	y	0.17	1	5	1	5	n	0.14	2	12	2	12	y	0.14	1	6	1	6	n	0.36	5	9	5	9	y	0.50	3	3	3	3	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	ENSMUSG00000020770.14	Unk	chr11	protein_coding	unkempt family zinc finger
known_NIR_2438	chr11	115947205	115949815	+	115947205;115949250	115949069;115949815	ES	ENSMUST00000021116.12	known	0.07	1	13.0	1	8;18	n	0.28	4	10.5	4	8;13	y	0.20	5	20.0	5	21;19	y	0.09	1	10.5	1	8;13	n	0.08	1	11.5	1	11;12	n	0.13	2	13.0	2	8;18	y	0.07	1	13.0	1	10;16	n	0.00	0	7.0	0	5;9	n	0.09	1	10.5	1	11;10	n	0.43	6	8.0	6	8;8	y	0.06	1	16.0	1	9;23	n	0.00	0	15.0	0	17;13	n	ENSMUSG00000020770.14	Unk	chr11	protein_coding	unkempt family zinc finger
known_NIR_2439	chr11	115971170	115972058	-	115971170;115971506	115971372;115972058	ES	ENSMUST00000074628.13	known	0.00	0	135.0	0	111;159	n	0.00	0	118.5	0	126;111	n	0.00	0	172.5	0	151;194	n	0.01	2	170.5	2	161;180	y	0.01	2	196.5	2	166;227	y	0.00	0	74.5	0	70;79	n	0.00	0	184.0	0	167;201	n	0.00	0	105.5	0	89;122	n	0.00	0	135.5	0	134;137	n	0.00	0	229.0	0	211;247	n	0.00	0	160.0	0	132;188	n	0.00	1	230.5	1	218;243	n	ENSMUSG00000034341.18	Wbp2	chr11	protein_coding	WW domain binding protein 2
known_NIR_2440	chr11	115997832	115998250	-	115997829	115998250	A3SS	ENSMUST00000141531.8	known	0.12	1	7	1	7	n	0.33	4	8	4	8	y	0.43	20	27	20	27	y	0.67	4	2	4	2	n	0.42	8	11	8	11	y	0.12	1	7	1	7	n	0.29	4	10	4	10	y	0.20	1	4	1	4	n	0.00	0	9	0	9	n	0.40	6	9	6	9	y	0.50	3	3	3	3	n	0.31	4	9	4	9	y	ENSMUSG00000020773.12	Trim47	chr11	protein_coding	tripartite motif-containing 47
known_NIR_2441	chr11	116043773	116044779	-	116043770	116044779	A3SS	ENSMUST00000136318.8	known	0.70	7	3	7	3	y	0.50	1	1	1	1	n	0.77	10	3	10	3	y	0.82	9	2	9	2	y	0.38	5	8	5	8	y	1.00	2	0	2	0	n	0.56	10	8	10	8	y	0.33	1	2	1	2	n	0.88	7	1	7	1	n	0.60	12	8	12	8	y	0.50	2	2	2	2	n	0.61	14	9	14	9	y	ENSMUSG00000020776.19	Fbf1	chr11	protein_coding	Fas (TNFRSF6) binding factor 1
known_NIR_2442	chr11	116046334	116046784	-	116046326	116046784	A3SS	ENSMUST00000136318.8	known	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	12	0	12	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.12	2	14	2	14	y	ENSMUSG00000020776.19	Fbf1	chr11	protein_coding	Fas (TNFRSF6) binding factor 1
known_NIR_2443	chr11	116069670	116071117	-	116070603	116071117	3pMXE	ENSMUST00000128793.2	known	0.00	3	1872	3	1872	y	0.00	7	1541	7	1541	y	0.00	13	3788	13	3788	y	0.00	8	3772	8	3772	y	0.00	7	2836	7	2836	y	0.00	5	1521	5	1521	y	0.00	6	3085	6	3085	y	0.00	4	1670	4	1670	y	0.00	8	2087	8	2087	y	0.00	7	4348	7	4348	y	0.01	13	2334	13	2334	y	0.00	10	3098	10	3098	y	ENSMUSG00000020777.17	Acox1	chr11	protein_coding	acyl-Coenzyme A oxidase 1, palmitoyl
known_NIR_2444	chr11	116069670;116070603	116070434;116071117	-	116069670	116071117	cassetteExon	ENSMUST00000130229.8	known	1.00	1861.0	3	1850;1872	3	y	1.00	1617.0	7	1693;1541	7	y	1.00	3708.5	13	3629;3788	13	y	1.00	3800.5	8	3829;3772	8	y	1.00	2840.0	7	2844;2836	7	y	1.00	1543.0	5	1565;1521	5	y	1.00	3139.0	6	3193;3085	6	y	1.00	1574.0	4	1478;1670	4	y	1.00	2103.0	8	2119;2087	8	y	1.00	4268.0	7	4188;4348	7	y	0.99	2354.0	13	2374;2334	13	y	1.00	3070.5	10	3043;3098	10	y	ENSMUSG00000020777.17	Acox1	chr11	protein_coding	acyl-Coenzyme A oxidase 1, palmitoyl
known_NIR_2445	chr11	116072846	116080241	-	116072846;116074450	116074290;116080241	ES	ENSMUST00000148601.2	known	0.72	855	335.5	855	653;18	y	0.71	707	294.5	707	573;16	y	0.53	1185	1059.5	1185	2066;53	y	0.72	1925	752.5	1925	1474;31	y	0.64	1173	657.5	1173	1275;40	y	0.53	453	402.5	453	780;25	y	0.67	1319	646.5	1319	1256;37	y	0.59	614	434.0	614	846;22	y	0.73	1033	380.5	1033	739;22	y	0.76	2232	714.5	2232	1389;40	y	0.74	1125	392.5	1125	747;38	y	0.69	1381	612.5	1381	1176;49	y	ENSMUSG00000020777.17	Acox1	chr11	protein_coding	acyl-Coenzyme A oxidase 1, palmitoyl
known_NIR_2446	chr11	116072846;116074450	116074290;116089048	-	116072846;116080401	116080241;116089048	MXE	ENSMUST00000072948.11	known	0.45	617.0	760.5	653;581	855;666	y	0.43	494.0	649.0	573;415	707;591	y	0.62	1912.0	1151.0	2066;1758	1185;1117	y	0.45	1405.5	1739.0	1474;1337	1925;1553	y	0.50	1164.5	1150.0	1275;1054	1173;1127	y	0.60	720.5	475.0	780;661	453;497	y	0.49	1155.5	1222.0	1256;1055	1319;1125	y	0.58	789.5	580.5	846;733	614;547	y	0.41	659.0	951.5	739;579	1033;870	y	0.39	1282.0	2028.0	1389;1175	2232;1824	y	0.39	674.0	1045.5	747;601	1125;966	y	0.45	1093.0	1313.0	1176;1010	1381;1245	y	ENSMUSG00000020777.17	Acox1	chr11	protein_coding	acyl-Coenzyme A oxidase 1, palmitoyl
known_NIR_2447	chr11	116074450	116089048	-	116074450	116080241	5pMXE	ENSMUST00000148601.2	known	0.97	581	18	581	18	y	0.96	415	16	415	16	y	0.97	1758	53	1758	53	y	0.98	1337	31	1337	31	y	0.96	1054	40	1054	40	y	0.96	661	25	661	25	y	0.97	1055	37	1055	37	y	0.97	733	22	733	22	y	0.96	579	22	579	22	y	0.97	1175	40	1175	40	y	0.94	601	38	601	38	y	0.95	1010	49	1010	49	y	ENSMUSG00000020777.17	Acox1	chr11	protein_coding	acyl-Coenzyme A oxidase 1, palmitoyl
known_NIR_2448	chr11	116074450	116089048	-	116080401	116089048	3pMXE	ENSMUST00000124684.2	known	0.47	581	666	581	666	y	0.41	415	591	415	591	y	0.61	1758	1117	1758	1117	y	0.46	1337	1553	1337	1553	y	0.48	1054	1127	1054	1127	y	0.57	661	497	661	497	y	0.48	1055	1125	1055	1125	y	0.57	733	547	733	547	y	0.40	579	870	579	870	y	0.39	1175	1824	1175	1824	y	0.38	601	966	601	966	y	0.45	1010	1245	1010	1245	y	ENSMUSG00000020777.17	Acox1	chr11	protein_coding	acyl-Coenzyme A oxidase 1, palmitoyl
known_NIR_2449	chr11	116074450;116080401	116080241;116089048	-	116074450	116089048	cassetteExon	ENSMUST00000066587.12	known	0.37	342.0	581	18;666	581	y	0.42	303.5	415	16;591	415	y	0.25	585.0	1758	53;1117	1758	y	0.37	792.0	1337	31;1553	1337	y	0.36	583.5	1054	40;1127	1054	y	0.28	261.0	661	25;497	661	y	0.36	581.0	1055	37;1125	1055	y	0.28	284.5	733	22;547	733	y	0.44	446.0	579	22;870	579	y	0.44	932.0	1175	40;1824	1175	y	0.46	502.0	601	38;966	601	y	0.39	647.0	1010	49;1245	1010	y	ENSMUSG00000020777.17	Acox1	chr11	protein_coding	acyl-Coenzyme A oxidase 1, palmitoyl
known_NIR_2450	chr11	116101872	116105665	+	116096594	116105665	A5SS	ENSMUST00000021130.7	known	-	-	-	-	-	-	0.56	5	4	5	4	n	0.38	5	8	5	8	y	0.57	8	6	8	6	y	0.36	5	9	5	9	y	0.00	0	11	0	11	n	0.37	7	12	7	12	y	0.00	0	3	0	3	n	1.00	3	0	3	0	n	0.61	11	7	11	7	y	0.60	6	4	6	4	y	0.25	1	3	1	3	n	ENSMUSG00000020778.13	Ten1	chr11	protein_coding	TEN1 telomerase capping complex subunit
known_NIR_2451	chr11	116183410;116184139	116184101;116184798	-	116183410	116184798	cassetteExon	ENSMUST00000106411.10	known	0.03	1.0	38	2;0	38	n	0.01	0.5	69	0;1	69	n	0.07	3.5	48	4;3	48	y	0.00	0.0	48	0;0	48	n	0.00	0.0	69	0;0	69	n	0.00	0.0	25	0;0	25	n	0.02	1.0	60	0;2	60	n	0.00	0.0	36	0;0	36	n	0.00	0.0	53	0;0	53	n	0.00	0.0	79	0;0	79	n	0.00	0.0	86	0;0	86	n	0.00	0.0	63	0;0	63	n	ENSMUSG00000020792.16	Exoc7	chr11	protein_coding	exocyst complex component 7
known_NIR_2452	chr11	116186515	116191092	-	116186515	116188397	5pMXE	ENSMUST00000136417.2	known	0.98	49	1	49	1	n	0.96	45	2	45	2	y	0.96	53	2	53	2	y	1.00	77	0	77	0	n	0.97	71	2	71	2	y	0.96	24	1	24	1	n	0.96	54	2	54	2	y	1.00	49	0	49	0	n	0.96	49	2	49	2	y	1.00	81	0	81	0	n	0.98	52	1	52	1	n	1.00	66	0	66	0	n	ENSMUSG00000020792.16	Exoc7	chr11	protein_coding	exocyst complex component 7
known_NIR_2453	chr11	116186515;116187624	116187556;116191092	-	116186515	116191092	cassetteExon	ENSMUST00000106411.10	known	0.01	0.5	49	1;0	49	n	0.02	1.0	45	2;0	45	n	0.05	3.0	53	4;2	53	y	0.02	1.5	77	2;1	77	n	0.03	2.0	71	3;1	71	n	0.00	0.0	24	0;0	24	n	0.07	4.0	54	6;2	54	y	0.05	2.5	49	3;2	49	y	0.07	3.5	49	2;5	49	y	0.02	1.5	81	1;2	81	n	0.06	3.5	52	5;2	52	y	0.03	2.0	66	1;3	66	n	ENSMUSG00000020792.16	Exoc7	chr11	protein_coding	exocyst complex component 7
known_NIR_2454	chr11	116186515;116187624	116187556;116191092	-	116186515;116188489	116188397;116191092	MXE	ENSMUST00000106413.10	known	0.20	0.5	2.0	1;0	1;3	n	0.15	1.0	5.5	2;0	2;9	n	0.60	3.0	2.0	4;2	2;2	y	0.43	1.5	2.0	2;1	0;4	n	0.50	2.0	2.0	3;1	2;2	n	0.00	0.0	3.5	0;0	1;6	n	0.47	4.0	4.5	6;2	2;7	y	0.71	2.5	1.0	3;2	0;2	n	0.50	3.5	3.5	2;5	2;5	y	0.60	1.5	1.0	1;2	0;2	n	0.78	3.5	1.0	5;2	1;1	n	1.00	2.0	0.0	1;3	0;0	n	ENSMUSG00000020792.16	Exoc7	chr11	protein_coding	exocyst complex component 7
known_NIR_2455	chr11	116186515;116188489	116188397;116191092	-	116186515	116191092	cassetteExon	ENSMUST00000106411.10	known	0.04	2.0	49	1;3	49	n	0.11	5.5	45	2;9	45	y	0.04	2.0	53	2;2	53	y	0.03	2.0	77	0;4	77	n	0.03	2.0	71	2;2	71	y	0.13	3.5	24	1;6	24	n	0.08	4.5	54	2;7	54	y	0.02	1.0	49	0;2	49	n	0.07	3.5	49	2;5	49	y	0.01	1.0	81	0;2	81	n	0.02	1.0	52	1;1	52	n	0.00	0.0	66	0;0	66	n	ENSMUSG00000020792.16	Exoc7	chr11	protein_coding	exocyst complex component 7
known_NIR_2456	chr11	116187624	116191092	-	116188489	116191092	A3SS&ES	ENSMUST00000139699.8	known	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.50	2	2	2	2	n	0.20	1	4	1	4	n	0.33	1	2	1	2	n	0.00	0	6	0	6	n	0.22	2	7	2	7	n	0.50	2	2	2	2	n	0.50	5	5	5	5	y	0.50	2	2	2	2	n	0.67	2	1	2	1	n	1.00	3	0	3	0	n	ENSMUSG00000020792.16	Exoc7	chr11	protein_coding	exocyst complex component 7
known_NIR_2457	chr11	116368941	116370478	-	116369466	116370478	3pMXE	ENSMUST00000130835.8	known	0.01	1	131	1	131	n	0.04	6	129	6	129	y	0.01	2	150	2	150	y	0.01	1	174	1	174	n	0.01	2	217	2	217	y	0.00	0	94	0	94	n	0.04	8	178	8	178	y	0.01	1	122	1	122	n	0.05	8	147	8	147	y	0.02	6	253	6	253	y	0.01	2	161	2	161	y	0.01	2	164	2	164	y	ENSMUSG00000015869.17	Prpsap1	chr11	protein_coding	phosphoribosyl pyrophosphate synthetase-associated protein 1
known_NIR_2458	chr11	116368941;116369466	116369351;116370478	-	116368941	116370478	cassetteExon	ENSMUST00000152874.8	known	0.99	139.5	1	148;131	1	n	0.96	136.5	6	144;129	6	y	0.99	151.5	2	153;150	2	y	0.99	164.0	1	154;174	1	n	0.99	193.5	2	170;217	2	y	1.00	87.0	0	80;94	0	n	0.96	180.0	8	182;178	8	y	0.99	110.5	1	99;122	1	n	0.95	139.5	8	132;147	8	y	0.98	237.5	6	222;253	6	y	0.99	156.5	2	152;161	2	y	0.99	170.5	2	177;164	2	y	ENSMUSG00000015869.17	Prpsap1	chr11	protein_coding	phosphoribosyl pyrophosphate synthetase-associated protein 1
known_NIR_2459	chr11	116370665	116376695	-	116370650	116376695	A3SS	ENSMUST00000152874.8	known	0.05	7	139	7	139	y	0.04	4	93	4	93	y	0.01	1	182	1	182	n	0.04	6	147	6	147	y	0.05	9	175	9	175	y	0.02	2	99	2	99	y	0.05	9	169	9	169	y	0.06	8	120	8	120	y	0.01	2	145	2	145	y	0.03	7	201	7	201	y	0.08	10	110	10	110	y	0.04	7	171	7	171	y	ENSMUSG00000015869.17	Prpsap1	chr11	protein_coding	phosphoribosyl pyrophosphate synthetase-associated protein 1
known_NIR_2460	chr11	116434558	116434692	-	116434553	116434692	A3SS	ENSMUST00000134102.2	known	1.00	9	0	9	0	n	0.73	8	3	8	3	y	0.87	13	2	13	2	y	1.00	16	0	16	0	n	1.00	17	0	17	0	n	0.94	15	1	15	1	n	1.00	24	0	24	0	n	1.00	11	0	11	0	n	1.00	8	0	8	0	n	1.00	17	0	17	0	n	1.00	8	0	8	0	n	1.00	11	0	11	0	n	ENSMUSG00000020802.9	Ube2o	chr11	protein_coding	ubiquitin-conjugating enzyme E2O
known_NIR_2461	chr11	116565201	116566315	+	116565201	116566334	A3SS	ENSMUST00000239363.2	known	0.23	3	10	3	10	y	0.45	5	6	5	6	y	0.38	3	5	3	5	n	0.33	2	4	2	4	n	0.64	7	4	7	4	y	0.00	0	1	0	1	n	0.12	1	7	1	7	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.30	3	7	3	7	y	0.00	0	3	0	3	n	0.75	3	1	3	1	n	ENSMUSG00000020812.19	Snhg16	chr11	lncRNA	small nucleolar RNA host gene 16
known_NIR_2462	chr11	116701693	116702749	-	116695480	116702749	A3SS	ENSMUST00000021170.9	known	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.18	2	9	2	9	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	ENSMUSG00000020814.14	Mxra7	chr11	protein_coding	matrix-remodelling associated 7
known_NIR_2463	chr11	116729954	116731236	-	116729954	116730664	A5SS	ENSMUST00000141735.8	known	0.80	35	9	35	9	y	0.72	38	15	38	15	y	0.86	57	9	57	9	y	0.56	22	17	22	17	y	0.76	42	13	42	13	y	0.68	15	7	15	7	y	0.75	45	15	45	15	y	0.82	14	3	14	3	y	0.80	28	7	28	7	y	0.74	26	9	26	9	y	0.85	28	5	28	5	y	0.82	27	6	27	6	y	ENSMUSG00000056962.12	Jmjd6	chr11	protein_coding	jumonji domain containing 6
known_NIR_2464	chr11	116729954;116730752	116730664;116731236	-	116729954	116731236	cassetteExon	ENSMUST00000047616.10	known	0.11	4.5	35	9;0	35	n	0.16	7.5	38	15;0	38	n	0.07	4.5	57	9;0	57	n	0.31	10.0	22	17;3	22	y	0.13	6.5	42	13;0	42	n	0.21	4.0	15	7;1	15	n	0.14	7.5	45	15;0	45	n	0.10	1.5	14	3;0	14	n	0.11	3.5	28	7;0	28	n	0.17	5.5	26	9;2	26	y	0.08	2.5	28	5;0	28	n	0.11	3.5	27	6;1	27	n	ENSMUSG00000056962.12	Jmjd6	chr11	protein_coding	jumonji domain containing 6
known_NIR_2465	chr11	116729954;116730757	116730664;116731236	-	116729954	116731236	cassetteExon	ENSMUST00000047616.10	known	0.16	6.5	35	9;4	35	y	0.16	7.5	38	15;0	38	n	0.10	6.5	57	9;4	57	y	0.29	9.0	22	17;1	22	n	0.17	8.5	42	13;4	42	y	0.19	3.5	15	7;0	15	n	0.17	9.0	45	15;3	45	y	0.10	1.5	14	3;0	14	n	0.12	4.0	28	7;1	28	n	0.17	5.5	26	9;2	26	y	0.10	3.0	28	5;1	28	n	0.16	5.0	27	6;4	27	y	ENSMUSG00000056962.12	Jmjd6	chr11	protein_coding	jumonji domain containing 6
known_NIR_2466	chr11	116730752	116731236	-	116730752	116731274	A5SS	ENSMUST00000124831.2	known	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.21	3	11	3	11	y	0.00	0	11	0	11	n	0.20	1	4	1	4	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.25	2	6	2	6	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	ENSMUSG00000056962.12	Jmjd6	chr11	protein_coding	jumonji domain containing 6
known_NIR_2467	chr11	116734600	116736645	+	116734600	116736589	A3SS	ENSMUST00000128784.2	known	0.00	0	12	0	12	n	0.25	4	12	4	12	y	0.36	4	7	4	7	y	0.13	2	13	2	13	y	0.17	4	19	4	19	y	0.31	4	9	4	9	y	0.14	5	31	5	31	y	0.00	0	8	0	8	n	0.40	4	6	4	6	y	0.38	6	10	6	10	y	0.15	2	11	2	11	y	0.22	4	14	4	14	y	ENSMUSG00000090266.11	Mettl23	chr11	protein_coding	methyltransferase like 23
known_NIR_2468	chr11	116734600	116739080	+	116734600	116736589	3pMXE	ENSMUST00000128784.2	known	0.82	54	12	54	12	y	0.85	69	12	69	12	y	0.86	44	7	44	7	y	0.83	63	13	63	13	y	0.75	58	19	58	19	y	0.80	37	9	37	9	y	0.70	71	31	71	31	y	0.81	35	8	35	8	y	0.90	54	6	54	6	y	0.89	79	10	79	10	y	0.83	54	11	54	11	y	0.83	68	14	68	14	y	ENSMUSG00000090266.11	Mettl23	chr11	protein_coding	methyltransferase like 23
known_NIR_2469	chr11	116734600	116739080	+	116734600	116736645	3pMXE	ENSMUST00000176765.2	known	1.00	54	0	54	0	n	0.95	69	4	69	4	y	0.92	44	4	44	4	y	0.97	63	2	63	2	y	0.94	58	4	58	4	y	0.90	37	4	37	4	y	0.93	71	5	71	5	y	1.00	35	0	35	0	n	0.93	54	4	54	4	y	0.93	79	6	79	6	y	0.96	54	2	54	2	y	0.94	68	4	68	4	y	ENSMUSG00000090266.11	Mettl23	chr11	protein_coding	methyltransferase like 23
known_NIR_2470	chr11	116734600;116736771	116736589;116739080	+	116734600	116739080	cassetteExon	ENSMUST00000106370.10	known	0.19	12.5	54	12;13	54	y	0.18	15.5	69	12;19	69	y	0.23	13.5	44	7;20	44	y	0.14	10.0	63	13;7	63	y	0.28	22.5	58	19;26	58	y	0.16	7.0	37	9;5	37	y	0.32	33.0	71	31;35	71	y	0.19	8.0	35	8;8	35	y	0.18	11.5	54	6;17	54	y	0.12	11.0	79	10;12	79	y	0.23	16.5	54	11;22	54	y	0.18	14.5	68	14;15	68	y	ENSMUSG00000090266.11	Mettl23	chr11	protein_coding	methyltransferase like 23
known_NIR_2471	chr11	116734600;116736771	116736645;116739080	+	116734600	116739080	cassetteExon	ENSMUST00000106370.10	known	0.11	6.5	54	0;13	54	n	0.14	11.5	69	4;19	69	y	0.21	12.0	44	4;20	44	y	0.07	4.5	63	2;7	63	y	0.21	15.0	58	4;26	58	y	0.11	4.5	37	4;5	37	y	0.22	20.0	71	5;35	71	y	0.10	4.0	35	0;8	35	n	0.16	10.5	54	4;17	54	y	0.10	9.0	79	6;12	79	y	0.18	12.0	54	2;22	54	y	0.12	9.5	68	4;15	68	y	ENSMUSG00000090266.11	Mettl23	chr11	protein_coding	methyltransferase like 23
known_NIR_2472	chr11	116739964	116740042	+	116739964	116744826	A3SS	ENSMUST00000143184.2	known	1.00	135	0	135	0	n	0.98	153	3	153	3	y	1.00	101	0	101	0	n	1.00	125	0	125	0	n	1.00	173	0	173	0	n	0.98	57	1	57	1	n	0.99	198	1	198	1	n	1.00	65	0	65	0	n	0.99	118	1	118	1	n	1.00	192	0	192	0	n	1.00	143	0	143	0	n	1.00	171	0	171	0	n	ENSMUSG00000090266.11	Mettl23	chr11	protein_coding	methyltransferase like 23
known_NIR_2473	chr11	116741787;116742577	116742474;116742847	-	116741787	116742847	cassetteExon	ENSMUST00000092404.13	known	0.13	33.0	212	45;21	212	y	0.14	30.5	188	47;14	188	y	0.13	32.5	226	41;24	226	y	0.14	25.0	158	33;17	158	y	0.16	43.0	218	53;33	218	y	0.10	13.0	117	17;9	117	y	0.21	53.0	196	63;43	196	y	0.14	17.0	102	24;10	102	y	0.16	22.5	114	33;12	114	y	0.18	42.0	194	52;32	194	y	0.17	32.0	159	41;23	159	y	0.18	43.0	198	50;36	198	y	ENSMUSG00000034120.19	Srsf2	chr11	protein_coding	serine and arginine-rich splicing factor 2
known_NIR_2474	chr11	116743681	116744826	+	116739964	116744826	A5SS	ENSMUST00000143184.2	known	-	-	-	-	-	-	0.73	8	3	8	3	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.90	9	1	9	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000090266.11	Mettl23	chr11	protein_coding	methyltransferase like 23
known_NIR_2475	chr11	116744729	116744826	+	116743681	116744826	A5SS	ENSMUST00000139954.9	known	1.00	4	0	4	0	n	0.33	4	8	4	8	y	1.00	8	0	8	0	n	1.00	8	0	8	0	n	1.00	11	0	11	0	n	1.00	4	0	4	0	n	0.25	3	9	3	9	y	1.00	8	0	8	0	n	1.00	9	0	9	0	n	1.00	7	0	7	0	n	1.00	5	0	5	0	n	1.00	8	0	8	0	n	ENSMUSG00000020818.17	Mfsd11	chr11	protein_coding	major facilitator superfamily domain containing 11
known_NIR_2476	chr11	116744729	116744826	+	116744583	116744826	A5SS	ENSMUST00000135135.2	known	1.00	4	0	4	0	n	1.00	4	0	4	0	n	0.80	8	2	8	2	y	0.89	8	1	8	1	n	0.85	11	2	11	2	y	0.67	4	2	4	2	n	1.00	3	0	3	0	n	1.00	8	0	8	0	n	1.00	9	0	9	0	n	1.00	7	0	7	0	n	1.00	5	0	5	0	n	1.00	8	0	8	0	n	ENSMUSG00000020818.17	Mfsd11	chr11	protein_coding	major facilitator superfamily domain containing 11
known_NIR_2477	chr11	116749407	116750125	+	116749407	116750150	A3SS	ENSMUST00000139954.9	known	0.95	18	1	18	1	n	0.93	14	1	14	1	n	0.91	41	4	41	4	y	0.94	30	2	30	2	y	1.00	29	0	29	0	n	1.00	18	0	18	0	n	0.93	27	2	27	2	y	0.96	27	1	27	1	n	1.00	23	0	23	0	n	1.00	45	0	45	0	n	0.96	25	1	25	1	n	0.93	13	1	13	1	n	ENSMUSG00000020818.17	Mfsd11	chr11	protein_coding	major facilitator superfamily domain containing 11
known_NIR_2478	chr11	116752521	116754732	+	116752493	116754732	A5SS	ENSMUST00000139954.9	known	0.05	2	39	2	39	y	0.09	3	32	3	32	y	0.04	2	51	2	51	y	0.03	1	31	1	31	n	0.08	4	44	4	44	y	0.00	0	23	0	23	n	0.04	2	53	2	53	y	0.00	0	25	0	25	n	0.00	0	27	0	27	n	0.08	4	47	4	47	y	0.06	2	32	2	32	y	0.10	5	43	5	43	y	ENSMUSG00000020818.17	Mfsd11	chr11	protein_coding	major facilitator superfamily domain containing 11
known_NIR_2479	chr11	117008078	117018736	+	117008078	117032244	A3SS	ENSMUST00000127090.8	known	0.17	2	10	2	10	y	0.29	2	5	2	5	n	0.44	8	10	8	10	y	0.20	3	12	3	12	y	0.25	4	12	4	12	y	0.33	3	6	3	6	n	0.14	3	19	3	19	y	0.30	3	7	3	7	y	0.00	0	8	0	8	n	0.14	2	12	2	12	y	0.40	2	3	2	3	n	0.27	3	8	3	8	y	ENSMUSG00000020823.17	Sec14l1	chr11	protein_coding	SEC14-like lipid binding 1
known_NIR_2480	chr11	117123545	117181224	+	117109757	117181224	A5SS	ENSMUST00000093907.11	known	0.11	2	17	2	17	y	0.27	3	8	3	8	y	0.19	5	22	5	22	y	0.08	2	24	2	24	y	0.12	4	30	4	30	y	0.20	2	8	2	8	y	0.04	1	26	1	26	n	0.21	3	11	3	11	y	0.11	3	25	3	25	y	0.08	2	23	2	23	y	0.00	0	17	0	17	n	0.24	7	22	7	22	y	ENSMUSG00000059248.14	Septin9	chr11	protein_coding	septin 9
known_NIR_2481	chr11	117157421	117181224	+	117109757	117181224	A5SS	ENSMUST00000093907.11	known	0.06	1	17	1	17	n	0.11	1	8	1	8	n	0.15	4	22	4	22	y	0.04	1	24	1	24	n	0.12	4	30	4	30	y	0.20	2	8	2	8	y	0.16	5	26	5	26	y	0.21	3	11	3	11	y	0.04	1	25	1	25	n	0.08	2	23	2	23	y	0.00	0	17	0	17	n	0.12	3	22	3	22	y	ENSMUSG00000059248.14	Septin9	chr11	protein_coding	septin 9
known_NIR_2482	chr11	117157421	117181224	+	117123545	117181224	A5SS	ENSMUST00000106354.9	known	0.33	1	2	1	2	n	0.25	1	3	1	3	n	0.44	4	5	4	5	n	0.33	1	2	1	2	n	0.50	4	4	4	4	n	0.50	2	2	2	2	n	0.83	5	1	5	1	n	0.50	3	3	3	3	n	0.25	1	3	1	3	n	0.50	2	2	2	2	n	-	-	-	-	-	-	0.30	3	7	3	7	y	ENSMUSG00000059248.14	Septin9	chr11	protein_coding	septin 9
known_NIR_2483	chr11	117199097	117242255	+	117181862	117242255	A5SS	ENSMUST00000093907.11	known	0.00	0	46	0	46	n	0.00	0	33	0	33	n	0.00	0	61	0	61	n	0.01	1	80	1	80	n	0.00	0	89	0	89	n	0.03	1	32	1	32	n	0.01	1	67	1	67	n	0.02	1	64	1	64	n	0.00	0	42	0	42	n	0.03	2	71	2	71	y	0.00	0	60	0	60	n	0.04	3	73	3	73	y	ENSMUSG00000059248.14	Septin9	chr11	protein_coding	septin 9
known_NIR_2484	chr11	117223296	117242255	+	117181862	117242255	A5SS	ENSMUST00000093907.11	known	0.06	3	46	3	46	y	0.00	0	33	0	33	n	0.03	2	61	2	61	y	0.00	0	80	0	80	n	0.02	2	89	2	89	y	0.03	1	32	1	32	n	0.01	1	67	1	67	n	0.00	0	64	0	64	n	0.05	2	42	2	42	y	0.00	0	71	0	71	n	0.05	3	60	3	60	y	0.01	1	73	1	73	n	ENSMUSG00000059248.14	Septin9	chr11	protein_coding	septin 9
known_NIR_2485	chr11	117661628	117663499	-	117661612	117663499	A3SS	ENSMUST00000131606.8	known	0.13	3	20	3	20	y	0.17	4	20	4	20	y	0.08	2	23	2	23	y	0.08	2	24	2	24	y	0.09	2	20	2	20	y	0.00	0	7	0	7	n	0.16	7	36	7	36	y	0.07	1	14	1	14	n	0.26	6	17	6	17	y	0.15	5	28	5	28	y	0.35	7	13	7	13	y	0.00	0	23	0	23	n	ENSMUSG00000025572.19	Tmc6	chr11	protein_coding	transmembrane channel-like gene family 6
known_NIR_2486	chr11	117669626	117669989	-	117669874	117669989	3pMXE	ENSMUST00000152304.3	known	0.00	0	11	0	11	n	0.11	2	16	2	16	y	0.20	3	12	3	12	y	0.06	1	15	1	15	n	0.00	0	24	0	24	n	0.08	1	12	1	12	n	0.00	0	25	0	25	n	0.00	0	12	0	12	n	0.06	1	15	1	15	n	0.00	0	21	0	21	n	0.00	0	23	0	23	n	0.08	2	22	2	22	y	ENSMUSG00000025572.19	Tmc6	chr11	protein_coding	transmembrane channel-like gene family 6
known_NIR_2487	chr11	117669626;117669874	117669759;117669989	-	117669626	117669989	cassetteExon	ENSMUST00000131606.8	known	1.00	10.0	0	9;11	0	n	0.86	12.0	2	8;16	2	y	0.79	11.5	3	11;12	3	y	0.93	14.0	1	13;15	1	n	1.00	27.5	0	31;24	0	n	0.89	8.5	1	5;12	1	n	1.00	19.0	0	13;25	0	n	1.00	9.5	0	7;12	0	n	0.91	10.0	1	5;15	1	n	1.00	22.0	0	23;21	0	n	1.00	16.5	0	10;23	0	n	0.91	19.5	2	17;22	2	y	ENSMUSG00000025572.19	Tmc6	chr11	protein_coding	transmembrane channel-like gene family 6
known_NIR_2488	chr11	117670117	117671362	-	117670117	117670370	5pMXE	ENSMUST00000131606.8	known	1.00	4	0	4	0	n	1.00	7	0	7	0	n	0.64	7	4	7	4	y	0.94	15	1	15	1	n	1.00	16	0	16	0	n	0.40	2	3	2	3	n	0.94	15	1	15	1	n	1.00	7	0	7	0	n	1.00	11	0	11	0	n	0.96	22	1	22	1	n	0.80	8	2	8	2	y	0.87	13	2	13	2	y	ENSMUSG00000025572.19	Tmc6	chr11	protein_coding	transmembrane channel-like gene family 6
known_NIR_2489	chr11	117700629	117703375	+	117700629	117703285	A3SS	ENSMUST00000026649.14	known	0.02	3	186	3	186	y	0.02	4	164	4	164	y	0.02	3	168	3	168	y	0.02	5	207	5	207	y	0.05	14	290	14	290	y	0.08	11	119	11	119	y	0.02	6	291	6	291	y	0.00	0	133	0	133	n	0.04	8	180	8	180	y	0.03	6	233	6	233	y	0.05	10	197	10	197	y	0.02	4	180	4	180	y	ENSMUSG00000048277.16	Syngr2	chr11	protein_coding	synaptogyrin 2
known_NIR_2490	chr11	117703522	117704104	+	117703522	117703872	A3SS&ES	ENSMUST00000177131.8	known	0.02	5	205	5	205	y	0.02	3	157	3	157	y	0.01	1	178	1	178	n	0.02	3	192	3	192	y	0.02	6	304	6	304	y	0.00	0	127	0	127	n	0.01	3	305	3	305	y	0.02	4	161	4	161	y	0.01	1	172	1	172	n	0.00	1	272	1	272	n	0.01	3	236	3	236	y	0.02	4	249	4	249	y	ENSMUSG00000048277.16	Syngr2	chr11	protein_coding	synaptogyrin 2
known_NIR_2491	chr11	117703522	117704104	+	117703522;117704011	117703872;117704104	ES	ENSMUST00000026649.14	known	0.02	5	209.5	5	205;214	y	0.02	3	158.0	3	157;159	y	0.01	1	184.0	1	178;190	n	0.02	3	190.0	3	192;188	y	0.02	6	298.5	6	304;293	y	0.00	0	131.5	0	127;136	n	0.01	3	294.5	3	305;284	y	0.03	4	150.5	4	161;140	y	0.01	1	187.5	1	172;203	n	0.00	1	290.0	1	272;308	n	0.01	3	233.0	3	236;230	y	0.02	4	243.0	4	249;237	y	ENSMUSG00000048277.16	Syngr2	chr11	protein_coding	synaptogyrin 2
known_NIR_2492	chr11	117703522	117704104	+	117704011	117704104	5pMXE	ENSMUST00000176936.2	known	0.02	5	214	5	214	y	0.02	3	159	3	159	y	0.01	1	190	1	190	n	0.02	3	188	3	188	y	0.02	6	293	6	293	y	0.00	0	136	0	136	n	0.01	3	284	3	284	y	0.03	4	140	4	140	y	0.00	1	203	1	203	n	0.00	1	308	1	308	n	0.01	3	230	3	230	y	0.02	4	237	4	237	y	ENSMUSG00000048277.16	Syngr2	chr11	protein_coding	synaptogyrin 2
known_NIR_2493	chr11	117704011	117704217	+	117704011	117704104	A3SS	ENSMUST00000026649.14	known	0.02	4	214	4	214	y	0.00	0	159	0	159	n	0.02	4	190	4	190	y	0.01	2	188	2	188	y	0.01	4	293	4	293	y	0.01	1	136	1	136	n	0.00	0	284	0	284	n	0.02	3	140	3	140	y	0.01	2	203	2	203	y	0.00	0	308	0	308	n	0.01	3	230	3	230	y	0.02	4	237	4	237	y	ENSMUSG00000048277.16	Syngr2	chr11	protein_coding	synaptogyrin 2
known_NIR_2494	chr11	117715607	117716540	-	117715607;117716458	117716427;117716540	ES	ENSMUST00000026661.4	known	0.01	1	66.5	1	60;73	n	0.00	0	41.0	0	34;48	n	0.00	0	2.0	0	2;2	n	0.01	1	66.0	1	60;72	n	0.07	5	71.0	5	64;78	y	0.00	0	4.0	0	4;4	n	0.01	1	77.5	1	72;83	n	0.00	0	6.0	0	6;6	n	0.00	0	76.0	0	77;75	n	0.01	1	99.0	1	96;102	n	0.03	3	83.5	3	81;86	y	0.00	0	116.0	0	112;120	n	ENSMUSG00000025574.14	Tk1	chr11	protein_coding	thymidine kinase 1
known_NIR_2495	chr11	117715607	117716540	-	117716458	117716540	3pMXE	ENSMUST00000150027.2	known	0.01	1	73	1	73	n	0.00	0	48	0	48	n	0.00	0	2	0	2	n	0.01	1	72	1	72	n	0.06	5	78	5	78	y	0.00	0	4	0	4	n	0.01	1	83	1	83	n	0.00	0	6	0	6	n	0.00	0	75	0	75	n	0.01	1	102	1	102	n	0.03	3	86	3	86	y	0.00	0	120	0	120	n	ENSMUSG00000025574.14	Tk1	chr11	protein_coding	thymidine kinase 1
known_NIR_2496	chr11	117723402	117725593	+	117723402	117729319	A3SS	ENSMUST00000132298.2	known	1.00	160	0	160	0	n	1.00	102	0	102	0	n	1.00	9	0	9	0	n	0.99	215	2	215	2	y	1.00	220	0	220	0	n	1.00	14	0	14	0	n	1.00	225	1	225	1	n	1.00	52	0	52	0	n	1.00	221	0	221	0	n	0.99	249	2	249	2	y	1.00	165	0	165	0	n	1.00	287	0	287	0	n	ENSMUSG00000093485.2	Gm20708	chr11	protein_coding	predicted gene 20708
known_NIR_2497	chr11	117723402	117725772	+	117723402;117725678	117725593;117725772	ES	ENSMUST00000073388.13	known	0.00	0	166.0	0	160;172	n	0.00	0	106.5	0	102;111	n	0.00	0	8.0	0	9;7	n	0.00	0	215.0	0	215;215	n	0.00	0	201.0	0	220;182	n	0.00	0	15.5	0	14;17	n	0.00	0	226.5	0	225;228	n	0.00	0	50.0	0	52;48	n	0.00	0	226.5	0	221;232	n	0.01	2	264.5	2	249;280	y	0.00	0	173.0	0	165;181	n	0.00	0	285.0	0	287;283	n	ENSMUSG00000017718.16	Afmid	chr11	protein_coding	arylformamidase
known_NIR_2498	chr11	117727338	117729319	+	117723402	117729319	A5SS	ENSMUST00000132298.2	known	1.00	251	0	251	0	n	1.00	173	0	173	0	n	1.00	21	0	21	0	n	0.99	246	2	246	2	y	1.00	269	0	269	0	n	1.00	26	0	26	0	n	1.00	252	1	252	1	n	1.00	52	0	52	0	n	1.00	261	0	261	0	n	0.99	276	2	276	2	y	1.00	219	0	219	0	n	1.00	375	0	375	0	n	ENSMUSG00000093485.2	Gm20708	chr11	protein_coding	predicted gene 20708
known_NIR_2499	chr11	117761446	117762430	-	117761446;117761926	117761838;117762430	ES	ENSMUST00000033230.8	known	0.06	1	15.0	1	17;13	n	0.00	0	31.0	0	24;38	n	0.09	4	39.5	4	41;38	y	0.00	0	20.0	0	16;24	n	0.00	0	46.5	0	40;53	n	0.00	0	19.5	0	17;22	n	0.00	0	27.0	0	21;33	n	0.13	3	20.5	3	24;17	y	0.08	1	11.0	1	11;11	n	0.11	2	17.0	2	14;20	y	0.00	0	12.0	0	12;12	n	0.00	0	19.5	0	19;20	n	ENSMUSG00000017713.10	Tha1	chr11	protein_coding	threonine aldolase 1
known_NIR_2500	chr11	117896717	117905473	+	117896717	117905400	A3SS	ENSMUST00000132676.8	known	0.09	2	21	2	21	y	0.13	3	20	3	20	y	0.18	6	28	6	28	y	0.09	3	32	3	32	y	0.04	1	26	1	26	n	0.16	3	16	3	16	y	0.05	2	39	2	39	y	0.08	2	22	2	22	y	0.20	2	8	2	8	y	0.03	1	32	1	32	n	0.24	4	13	4	13	y	0.31	8	18	8	18	y	ENSMUSG00000017715.12	Pgs1	chr11	protein_coding	phosphatidylglycerophosphate synthase 1
known_NIR_2501	chr11	118084523	118103475	-	118084523	118139265	A5SS	ENSMUST00000100181.11	known	0.61	34	22	34	22	y	0.71	36	15	36	15	y	0.74	58	20	58	20	y	0.61	38	24	38	24	y	0.61	42	27	42	27	y	0.71	30	12	30	12	y	0.65	36	19	36	19	y	0.84	36	7	36	7	y	0.59	19	13	19	13	y	0.67	38	19	38	19	y	0.50	16	16	16	16	y	0.52	37	34	37	34	y	ENSMUSG00000017132.18	Cyth1	chr11	protein_coding	cytohesin 1
known_NIR_2502	chr11	11823775	11826245	-	11823253	11826245	A3SS	ENSMUST00000066237.10	known	0.05	6	105	6	105	y	0.15	7	39	7	39	y	0.09	8	81	8	81	y	0.09	7	74	7	74	y	0.11	14	119	14	119	y	0.00	0	45	0	45	n	0.10	12	113	12	113	y	0.09	5	48	5	48	y	0.12	17	120	17	120	y	0.13	20	130	20	130	y	0.14	26	157	26	157	y	0.11	19	152	19	152	y	ENSMUSG00000020182.17	Ddc	chr11	protein_coding	dopa decarboxylase
known_NIR_2503	chr11	118287669	118288947	-	118284231	118288947	A3SS	ENSMUST00000144529.2	known	1.00	152	0	152	0	n	1.00	140	0	140	0	n	1.00	311	0	311	0	n	1.00	182	0	182	0	n	1.00	255	0	255	0	n	0.94	118	7	118	7	y	1.00	217	0	217	0	n	1.00	114	0	114	0	n	0.94	110	7	110	7	y	1.00	199	0	199	0	n	1.00	143	0	143	0	n	1.00	132	0	132	0	n	ENSMUSG00000033880.12	Lgals3bp	chr11	protein_coding	lectin, galactoside-binding, soluble, 3 binding protein
known_NIR_2504	chr11	118290627	118292516	-	118290627	118292612	A5SS	ENSMUST00000043722.10	known	0.04	5	123	5	123	y	0.00	0	111	0	111	n	0.00	0	250	0	250	n	0.00	0	153	0	153	n	0.00	1	264	1	264	n	0.00	0	103	0	103	n	0.00	0	156	0	156	n	0.00	0	90	0	90	n	0.00	0	106	0	106	n	0.01	1	160	1	160	n	0.00	0	125	0	125	n	0.02	2	121	2	121	y	ENSMUSG00000033880.12	Lgals3bp	chr11	protein_coding	lectin, galactoside-binding, soluble, 3 binding protein
known_NIR_2505	chr11	118299710;118301016	118300906;118301679	-	118299710	118301679	cassetteExon	ENSMUST00000106288.8	known	0.10	8.0	73	5;11	73	y	0.09	6.0	60	6;6	60	y	0.03	3.0	89	4;2	89	y	0.13	11.5	76	8;15	76	y	0.04	4.5	104	7;2	104	y	0.06	3.5	56	4;3	56	y	0.05	5.0	91	7;3	91	y	0.07	4.5	58	6;3	58	y	0.10	3.5	31	3;4	31	y	0.04	3.5	82	2;5	82	y	0.02	1.5	59	0;3	59	n	0.06	4.0	60	2;6	60	y	ENSMUSG00000025575.15	Cant1	chr11	protein_coding	calcium activated nucleotidase 1
known_NIR_2506	chr11	118308480	118309798	-	118308480	118309756	A5SS	ENSMUST00000106288.8	known	0.00	0	16	0	16	n	0.16	3	16	3	16	y	0.05	1	18	1	18	n	0.00	0	12	0	12	n	0.00	0	27	0	27	n	0.06	1	16	1	16	n	0.04	1	23	1	23	n	0.17	4	19	4	19	y	0.09	1	10	1	10	n	0.00	0	17	0	17	n	0.05	1	19	1	19	n	0.00	0	12	0	12	n	ENSMUSG00000025575.15	Cant1	chr11	protein_coding	calcium activated nucleotidase 1
known_NIR_2507	chr11	118308632	118309756	-	118308480	118309756	A3SS	ENSMUST00000106288.8	known	0.06	1	16	1	16	n	0.00	0	16	0	16	n	0.14	3	18	3	18	y	0.00	0	12	0	12	n	0.00	0	27	0	27	n	0.06	1	16	1	16	n	0.00	0	23	0	23	n	0.14	3	19	3	19	y	0.09	1	10	1	10	n	0.00	0	17	0	17	n	0.10	2	19	2	19	y	0.08	1	12	1	12	n	ENSMUSG00000025575.15	Cant1	chr11	protein_coding	calcium activated nucleotidase 1
known_NIR_2508	chr11	118334383	118334518	+	118319394	118334518	A5SS	ENSMUST00000017590.9	known	0.00	0	20	0	20	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.25	3	9	3	9	y	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	ENSMUSG00000017446.15	C1qtnf1	chr11	protein_coding	C1q and tumor necrosis factor related protein 1
known_NIR_2509	chr11	118369779	118369916	+	118369779	118369912	A3SS	ENSMUST00000135383.9	known	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.18	2	9	2	9	y	0.06	1	16	1	16	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.33	3	6	3	6	n	ENSMUSG00000033857.13	Engase	chr11	protein_coding	endo-beta-N-acetylglucosaminidase
known_NIR_2510	chr11	118376144	118376583	+	118376140	118376583	A5SS	ENSMUST00000135383.9	known	0.00	0	9	0	9	n	0.00	0	21	0	21	n	0.08	1	12	1	12	n	0.00	0	22	0	22	n	0.09	3	30	3	30	y	0.00	0	7	0	7	n	0.00	0	19	0	19	n	0.08	1	12	1	12	n	0.25	3	9	3	9	y	0.06	1	15	1	15	n	0.00	0	20	0	20	n	0.11	2	16	2	16	y	ENSMUSG00000033857.13	Engase	chr11	protein_coding	endo-beta-N-acetylglucosaminidase
known_NIR_2511	chr11	118376731	118377271	+	118376731	118377274	A3SS	ENSMUST00000135383.9	known	0.21	3	11	3	11	y	0.45	5	6	5	6	y	0.50	4	4	4	4	n	0.37	7	12	7	12	y	0.38	9	15	9	15	y	0.20	1	4	1	4	n	0.21	3	11	3	11	y	0.57	4	3	4	3	n	0.50	4	4	4	4	n	0.32	6	13	6	13	y	0.08	1	12	1	12	n	0.64	7	4	7	4	y	ENSMUSG00000033857.13	Engase	chr11	protein_coding	endo-beta-N-acetylglucosaminidase
known_NIR_2512	chr11	119047633	119048566	-	119047636	119048566	A3SS	ENSMUST00000036113.4	known	0.50	5	5	5	5	y	0.64	7	4	7	4	y	0.36	4	7	4	7	y	0.64	7	4	7	4	y	0.55	11	9	11	9	y	0.45	5	6	5	6	y	0.45	10	12	10	12	y	0.59	10	7	10	7	y	0.44	4	5	4	5	n	0.75	15	5	15	5	y	0.73	8	3	8	3	y	0.46	13	15	13	15	y	ENSMUSG00000039976.5	Tbc1d16	chr11	protein_coding	TBC1 domain family, member 16
known_NIR_2513	chr11	119158917	119160914	+	119159048	119160914	A5SS	ENSMUST00000106259.9	known	0.07	2	25	2	25	y	0.05	3	52	3	52	y	0.06	4	61	4	61	y	0.20	18	70	18	70	y	0.16	19	98	19	98	y	0.19	9	39	9	39	y	0.16	18	96	18	96	y	0.11	7	58	7	58	y	0.20	13	51	13	51	y	0.15	16	94	16	94	y	0.11	7	55	7	55	y	0.17	18	89	18	89	y	ENSMUSG00000025579.15	Gaa	chr11	protein_coding	glucosidase, alpha, acid
known_NIR_2514	chr11	119169835	119170208	+	119169835	119171238	A3SS	ENSMUST00000106259.9	known	0.00	0	155	0	155	n	0.00	0	142	0	142	n	0.00	0	132	0	132	n	0.00	0	158	0	158	n	0.00	0	227	0	227	n	0.01	1	88	1	88	n	0.00	0	227	0	227	n	0.00	0	90	0	90	n	0.00	0	128	0	128	n	0.00	0	202	0	202	n	0.02	3	180	3	180	y	0.02	3	189	3	189	y	ENSMUSG00000025579.15	Gaa	chr11	protein_coding	glucosidase, alpha, acid
known_NIR_2515	chr11	119390487	119391417	+	119390487;119390711	119390672;119391417	ES	ENSMUST00000106244.9	known	0.00	0	26.5	0	21;32	n	0.00	0	28.0	0	25;31	n	0.00	0	28.5	0	27;30	n	0.03	1	29.5	1	29;30	n	0.07	2	25.5	2	26;25	y	0.05	1	21.0	1	24;18	n	0.00	0	24.0	0	20;28	n	0.00	0	20.0	0	20;20	n	0.00	0	17.0	0	14;20	n	0.06	2	33.0	2	30;36	y	0.00	0	19.0	0	20;18	n	0.04	1	25.5	1	24;27	n	ENSMUSG00000039850.17	Endov	chr11	protein_coding	endonuclease V
known_NIR_2516	chr11	119395993	119396414	+	119395993	119398028	A3SS	ENSMUST00000106244.9	known	0.12	3	22	3	22	y	0.18	4	18	4	18	y	0.33	7	14	7	14	y	0.07	1	14	1	14	n	0.09	2	21	2	21	y	0.44	7	9	7	9	y	0.35	9	17	9	17	y	0.24	5	16	5	16	y	0.22	4	14	4	14	y	0.33	6	12	6	12	y	0.08	1	11	1	11	n	0.23	5	17	5	17	y	ENSMUSG00000039850.17	Endov	chr11	protein_coding	endonuclease V
known_NIR_2517	chr11	119690292	119707904	+	119690292;119702846	119702771;119707904	ES	ENSMUST00000125583.8	known	0.00	0	13.0	0	11;15	n	0.11	1	8.5	1	7;10	n	0.00	0	24.0	0	26;22	n	0.00	0	30.0	0	31;29	n	0.00	0	27.0	0	27;27	n	0.00	0	9.0	0	9;9	n	0.00	0	27.0	0	29;25	n	0.00	0	11.0	0	8;14	n	0.00	0	15.0	0	12;18	n	0.00	0	23.5	0	24;23	n	0.09	2	21.5	2	20;23	y	0.00	0	27.0	0	29;25	n	ENSMUSG00000025583.16	Rptor	chr11	protein_coding	regulatory associated protein of MTOR, complex 1
known_NIR_2518	chr11	119690292	119707904	+	119702846	119707904	5pMXE	ENSMUST00000126802.2	known	0.00	0	15	0	15	n	0.09	1	10	1	10	n	0.00	0	22	0	22	n	0.00	0	29	0	29	n	0.00	0	27	0	27	n	0.00	0	9	0	9	n	0.00	0	25	0	25	n	0.00	0	14	0	14	n	0.00	0	18	0	18	n	0.00	0	23	0	23	n	0.08	2	23	2	23	y	0.00	0	25	0	25	n	ENSMUSG00000025583.16	Rptor	chr11	protein_coding	regulatory associated protein of MTOR, complex 1
known_NIR_2519	chr11	119756496	119757980	+	119756496	119762321	A3SS	ENSMUST00000026671.13	known	0.00	0	27	0	27	n	0.00	0	11	0	11	n	0.08	2	23	2	23	y	0.10	4	36	4	36	y	0.00	0	23	0	23	n	0.00	0	15	0	15	n	0.00	0	39	0	39	n	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.03	1	29	1	29	n	0.00	0	24	0	24	n	0.00	0	29	0	29	n	ENSMUSG00000025583.16	Rptor	chr11	protein_coding	regulatory associated protein of MTOR, complex 1
known_NIR_2520	chr11	119804763	119806239	+	119804378	119806239	A5SS	ENSMUST00000132197.8	known	0.88	44	6	44	6	y	0.98	44	1	44	1	n	0.96	43	2	43	2	y	0.92	46	4	46	4	y	1.00	62	0	62	0	n	0.92	33	3	33	3	y	1.00	71	0	71	0	n	0.88	23	3	23	3	y	1.00	33	0	33	0	n	1.00	59	0	59	0	n	1.00	41	0	41	0	n	1.00	56	0	56	0	n	ENSMUSG00000025371.13	Chmp6	chr11	protein_coding	charged multivesicular body protein 6
known_NIR_2521	chr11	119806380	119806458	+	119806348	119806458	A5SS	ENSMUST00000132197.8	known	0.00	0	48	0	48	n	0.00	0	58	0	58	n	0.00	0	65	0	65	n	0.03	2	72	2	72	y	0.00	0	93	0	93	n	0.00	0	46	0	46	n	0.01	1	83	1	83	n	0.00	0	40	0	40	n	0.00	0	39	0	39	n	0.02	2	92	2	92	y	0.02	1	58	1	58	n	0.00	0	76	0	76	n	ENSMUSG00000025371.13	Chmp6	chr11	protein_coding	charged multivesicular body protein 6
known_NIR_2522	chr11	119887573	119887835	+	119887573	119887715	A3SS	ENSMUST00000106231.8	known	0.13	12	79	12	79	y	0.10	10	93	10	93	y	0.16	11	58	11	58	y	0.05	4	73	4	73	y	0.05	5	101	5	101	y	0.04	1	23	1	23	n	0.04	3	68	3	68	y	0.04	2	45	2	45	y	0.07	5	63	5	63	y	0.04	3	64	3	64	y	0.04	3	66	3	66	y	0.09	3	29	3	29	y	ENSMUSG00000025372.17	Baiap2	chr11	protein_coding	brain-specific angiogenesis inhibitor 1-associated protein 2
known_NIR_2523	chr11	119891412	119893864	+	119891412	119891900	3pMXE	ENSMUST00000075180.12	known	0.85	35	6	35	6	y	0.74	31	11	31	11	y	0.68	15	7	15	7	y	0.75	21	7	21	7	y	0.89	51	6	51	6	y	0.34	10	19	10	19	y	0.71	40	16	40	16	y	0.52	17	16	17	16	y	0.81	21	5	21	5	y	0.86	31	5	31	5	y	0.83	30	6	30	6	y	0.73	22	8	22	8	y	ENSMUSG00000025372.17	Baiap2	chr11	protein_coding	brain-specific angiogenesis inhibitor 1-associated protein 2
known_NIR_2524	chr11	119891412	119897185	+	119891412	119891900	3pMXE	ENSMUST00000075180.12	known	0.90	53	6	53	6	y	0.82	51	11	51	11	y	0.75	21	7	21	7	y	0.83	34	7	34	7	y	0.88	42	6	42	6	y	0.51	20	19	20	19	y	0.70	37	16	37	16	y	0.61	25	16	25	16	y	0.85	29	5	29	5	y	0.87	33	5	33	5	y	0.88	44	6	44	6	y	0.78	29	8	29	8	y	ENSMUSG00000025372.17	Baiap2	chr11	protein_coding	brain-specific angiogenesis inhibitor 1-associated protein 2
known_NIR_2525	chr11	119891412;119893911	119893864;119897185	+	119891412	119897185	cassetteExon	ENSMUST00000026436.10	known	0.39	34.5	53	35;34	53	y	0.42	37.0	51	31;43	51	y	0.46	18.0	21	15;21	21	y	0.43	25.5	34	21;30	34	y	0.56	54.0	42	51;57	42	y	0.41	14.0	20	10;18	20	y	0.50	37.5	37	40;35	37	y	0.45	20.5	25	17;24	25	y	0.49	27.5	29	21;34	29	y	0.49	32.0	33	31;33	33	y	0.48	40.0	44	30;50	44	y	0.49	27.5	29	22;33	29	y	ENSMUSG00000025372.17	Baiap2	chr11	protein_coding	brain-specific angiogenesis inhibitor 1-associated protein 2
known_NIR_2526	chr11	119961436	119962185	-	119961436	119961618	5pMXE	ENSMUST00000150463.8	known	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.12	2	15	2	15	y	0.00	0	8	0	8	n	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	21	0	21	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	ENSMUSG00000039781.15	Cep131	chr11	protein_coding	centrosomal protein 131
known_NIR_2527	chr11	119961436	119962185	-	119961436;119961728	119961618;119962185	ES	ENSMUST00000106227.8	known	0.00	0	6.0	0	7;5	n	0.00	0	7.5	0	4;11	n	0.15	2	11.5	2	15;8	y	0.00	0	9.0	0	8;10	n	0.00	0	15.5	0	16;15	n	0.00	0	7.5	0	7;8	n	0.00	0	8.5	0	8;9	n	0.00	0	6.5	0	10;3	n	0.00	0	5.5	0	7;4	n	0.00	0	17.0	0	21;13	n	0.00	0	7.0	0	3;11	n	0.00	0	6.5	0	9;4	n	ENSMUSG00000039781.15	Cep131	chr11	protein_coding	centrosomal protein 131
known_NIR_2528	chr11	119986697	119987391	-	119986697	119987407	A5SS	ENSMUST00000093901.12	known	0.06	1	17	1	17	n	0.06	1	16	1	16	n	0.00	0	13	0	13	n	0.18	3	14	3	14	y	0.09	3	29	3	29	y	0.29	2	5	2	5	n	0.08	1	12	1	12	n	0.17	2	10	2	10	y	0.18	2	9	2	9	y	0.11	2	16	2	16	y	0.12	2	14	2	14	y	0.42	5	7	5	7	y	ENSMUSG00000025377.15	Tepsin	chr11	protein_coding	TEPSIN, adaptor related protein complex 4 accessory protein
known_NIR_2529	chr11	119990088	119991000	+	119990084	119991000	A5SS	ENSMUST00000106223.4	known	0.01	1	178	1	178	n	0.01	2	134	2	134	y	0.00	0	100	0	100	n	0.00	0	130	0	130	n	0.01	2	190	2	190	y	0.00	0	57	0	57	n	0.00	0	178	0	178	n	0.00	0	93	0	93	n	0.00	0	109	0	109	n	0.02	5	196	5	196	y	0.01	1	184	1	184	n	0.00	0	168	0	168	n	ENSMUSG00000078572.4	Ndufaf8	chr11	protein_coding	NADH:ubiquinone oxidoreductase complex assembly factor 8
known_NIR_2530	chr11	119996859	119997260	-	119996862	119997260	A3SS	ENSMUST00000103018.11	known	0.28	57	148	57	148	y	0.26	51	147	51	147	y	0.34	123	243	123	243	y	0.30	71	165	71	165	y	0.24	111	345	111	345	y	0.32	102	213	102	213	y	0.26	94	261	94	261	y	0.28	90	232	90	232	y	0.31	63	138	63	138	y	0.29	89	221	89	221	y	0.27	57	153	57	153	y	0.25	48	142	48	142	y	ENSMUSG00000061306.17	Slc38a10	chr11	protein_coding	solute carrier family 38, member 10
known_NIR_2531	chr11	119997436	120000258	-	119997436	119999293	5pMXE	ENSMUST00000148503.8	known	0.93	91	7	91	7	y	0.92	85	7	85	7	y	0.96	176	7	176	7	y	0.94	130	8	130	8	y	0.96	233	9	233	9	y	0.93	164	12	164	12	y	0.95	167	8	167	8	y	0.94	149	9	149	9	y	0.98	94	2	94	2	y	0.97	135	4	135	4	y	0.92	112	10	112	10	y	0.90	94	11	94	11	y	ENSMUSG00000061306.17	Slc38a10	chr11	protein_coding	solute carrier family 38, member 10
known_NIR_2532	chr11	119997436	120000258	-	119997436;119999316	119999293;120000258	ES	ENSMUST00000103018.11	known	0.93	91	6.5	91	7;6	y	0.94	85	5.0	85	7;3	y	0.96	176	6.5	176	7;6	y	0.96	130	5.5	130	8;3	y	0.96	233	9.5	233	9;10	y	0.95	164	9.5	164	12;7	y	0.97	167	5.5	167	8;3	y	0.95	149	7.5	149	9;6	y	0.99	94	1.0	94	2;0	n	0.98	135	3.0	135	4;2	y	0.93	112	9.0	112	10;8	y	0.92	94	8.0	94	11;5	y	ENSMUSG00000061306.17	Slc38a10	chr11	protein_coding	solute carrier family 38, member 10
known_NIR_2533	chr11	119997436	120000258	-	119999769	120000258	3pMXE	ENSMUST00000124997.2	known	1.00	91	0	91	0	n	1.00	85	0	85	0	n	1.00	176	0	176	0	n	1.00	130	0	130	0	n	1.00	233	1	233	1	n	1.00	164	0	164	0	n	1.00	167	0	167	0	n	0.98	149	3	149	3	y	0.99	94	1	94	1	n	0.99	135	1	135	1	n	0.98	112	2	112	2	y	1.00	94	0	94	0	n	ENSMUSG00000061306.17	Slc38a10	chr11	protein_coding	solute carrier family 38, member 10
known_NIR_2534	chr11	119997436;119999379	119999293;120000258	-	119997436	120000258	cassetteExon	ENSMUST00000045402.14	known	0.07	7.0	91	7;7	91	y	0.07	6.5	85	7;6	85	y	0.05	10.0	176	7;13	176	y	0.05	7.5	130	8;7	130	y	0.05	11.5	233	9;14	233	y	0.05	8.5	164	12;5	164	y	0.03	5.0	167	8;2	167	y	0.05	7.5	149	9;6	149	y	0.02	2.0	94	2;2	94	y	0.04	5.0	135	4;6	135	y	0.06	7.0	112	10;4	112	y	0.08	8.0	94	11;5	94	y	ENSMUSG00000061306.17	Slc38a10	chr11	protein_coding	solute carrier family 38, member 10
known_NIR_2535	chr11	119997436;119999769	119999293;120000258	-	119997436	120000258	cassetteExon	ENSMUST00000045402.14	known	0.04	3.5	91	7;0	91	n	0.04	3.5	85	7;0	85	n	0.02	3.5	176	7;0	176	n	0.03	4.0	130	8;0	130	n	0.02	5.0	233	9;1	233	n	0.04	6.0	164	12;0	164	n	0.02	4.0	167	8;0	167	n	0.04	6.0	149	9;3	149	y	0.02	1.5	94	2;1	94	n	0.02	2.5	135	4;1	135	n	0.05	6.0	112	10;2	112	y	0.06	5.5	94	11;0	94	n	ENSMUSG00000061306.17	Slc38a10	chr11	protein_coding	solute carrier family 38, member 10
known_NIR_2536	chr11	119999379	120000258	-	119999316	120000258	A3SS	ENSMUST00000103018.11	known	0.54	7	6	7	6	y	0.67	6	3	6	3	n	0.68	13	6	13	6	y	0.70	7	3	7	3	y	0.58	14	10	14	10	y	0.42	5	7	5	7	y	0.40	2	3	2	3	n	0.50	6	6	6	6	y	1.00	2	0	2	0	n	0.75	6	2	6	2	n	0.33	4	8	4	8	y	0.50	5	5	5	5	y	ENSMUSG00000061306.17	Slc38a10	chr11	protein_coding	solute carrier family 38, member 10
known_NIR_2537	chr11	119999769	120000258	-	119999316	120000258	A3SS	ENSMUST00000103018.11	known	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.09	1	10	1	10	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.33	3	6	3	6	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.20	2	8	2	8	y	0.00	0	5	0	5	n	ENSMUSG00000061306.17	Slc38a10	chr11	protein_coding	solute carrier family 38, member 10
known_NIR_2538	chr11	120009970	120019249	-	120007847	120019249	A3SS	ENSMUST00000103018.11	known	0.02	3	181	3	181	y	0.04	6	149	6	149	y	0.02	6	321	6	321	y	0.01	1	198	1	198	n	0.03	10	327	10	327	y	0.02	5	285	5	285	y	0.01	3	248	3	248	y	0.01	4	275	4	275	y	0.03	5	172	5	172	y	0.03	8	245	8	245	y	0.03	6	166	6	166	y	0.02	3	167	3	167	y	ENSMUSG00000061306.17	Slc38a10	chr11	protein_coding	solute carrier family 38, member 10
known_NIR_2539	chr11	120015217	120019249	-	120007847	120019249	A3SS	ENSMUST00000103018.11	known	0.00	0	181	0	181	n	0.01	2	149	2	149	y	0.01	3	321	3	321	y	0.00	0	198	0	198	n	0.00	0	327	0	327	n	0.00	0	285	0	285	n	0.01	2	248	2	248	y	0.00	1	275	1	275	n	0.00	0	172	0	172	n	0.00	0	245	0	245	n	0.00	0	166	0	166	n	0.00	0	167	0	167	n	ENSMUSG00000061306.17	Slc38a10	chr11	protein_coding	solute carrier family 38, member 10
known_NIR_2540	chr11	120029918	120031419	-	120029955	120031419	A3SS	ENSMUST00000103018.11	known	0.00	0	91	0	91	n	0.05	4	70	4	70	y	0.02	5	228	5	228	y	0.03	4	131	4	131	y	0.02	7	278	7	278	y	0.06	14	220	14	220	y	0.02	4	192	4	192	y	0.02	4	202	4	202	y	0.00	0	111	0	111	n	0.00	0	179	0	179	n	0.06	7	120	7	120	y	0.02	2	130	2	130	y	ENSMUSG00000061306.17	Slc38a10	chr11	protein_coding	solute carrier family 38, member 10
known_NIR_2541	chr11	120031512	120038547	-	120031512;120032471	120032426;120038547	ES	ENSMUST00000103018.11	known	0.01	1	101.0	1	96;106	n	0.04	3	79.5	3	85;74	y	0.01	2	198.0	2	206;190	y	0.00	0	117.5	0	108;127	n	0.01	3	262.5	3	270;255	y	0.04	7	180.0	7	171;189	y	0.02	3	174.5	3	171;178	y	0.02	3	186.0	3	196;176	y	0.01	1	93.5	1	92;95	n	0.01	1	196.5	1	190;203	n	0.00	0	110.0	0	116;104	n	0.01	1	113.0	1	118;108	n	ENSMUSG00000061306.17	Slc38a10	chr11	protein_coding	solute carrier family 38, member 10
known_NIR_2542	chr11	120031512;120038664	120038547;120041806	-	120031512;120032471	120032426;120041806	MXE	ENSMUST00000132239.8	known	0.45	38.5	48.0	1;76	96;0	n	0.43	32.5	42.5	3;62	85;0	n	0.47	90.0	103.5	2;178	206;1	n	0.47	47.0	54.0	0;94	108;0	n	0.44	106.0	135.5	3;209	270;1	n	0.49	81.0	85.5	7;155	171;0	n	0.46	73.0	86.5	3;143	171;2	y	0.46	82.0	98.0	3;161	196;0	n	0.40	31.0	46.0	1;61	92;0	n	0.39	62.0	95.0	1;123	190;0	n	0.41	39.5	58.0	0;79	116;0	n	0.44	45.5	59.0	1;90	118;0	n	ENSMUSG00000061306.17	Slc38a10	chr11	protein_coding	solute carrier family 38, member 10
known_NIR_2543	chr11	120032471	120041806	-	120032471;120038664	120038547;120041806	ES	ENSMUST00000103018.11	known	0.00	0	91.0	0	106;76	n	0.00	0	68.0	0	74;62	n	0.01	1	184.0	1	190;178	n	0.00	0	110.5	0	127;94	n	0.00	1	232.0	1	255;209	n	0.00	0	172.0	0	189;155	n	0.01	2	160.5	2	178;143	y	0.00	0	168.5	0	176;161	n	0.00	0	78.0	0	95;61	n	0.00	0	163.0	0	203;123	n	0.00	0	91.5	0	104;79	n	0.00	0	99.0	0	108;90	n	ENSMUSG00000061306.17	Slc38a10	chr11	protein_coding	solute carrier family 38, member 10
known_NIR_2544	chr11	120238175	120238462	-	120238362	120238462	A3SS	ENSMUST00000141406.8	known	1.00	206	0	206	0	n	1.00	318	0	318	0	n	1.00	877	0	877	0	n	0.98	188	3	188	3	y	1.00	260	0	260	0	n	1.00	279	0	279	0	n	0.93	252	18	252	18	y	1.00	186	0	186	0	n	1.00	179	0	179	0	n	1.00	261	0	261	0	n	1.00	253	0	253	0	n	1.00	319	0	319	0	n	ENSMUSG00000062825.16	Actg1	chr11	protein_coding	actin, gamma, cytoplasmic 1
known_NIR_2545	chr11	120238175;120238362	120238318;120238462	-	120238175	120238462	cassetteExon	ENSMUST00000071555.13	known	0.00	0.0	206	0;0	206	n	0.00	0.0	318	0;0	318	n	0.00	0.0	877	0;0	877	n	0.01	1.5	188	0;3	188	n	0.00	0.0	260	0;0	260	n	0.00	0.0	279	0;0	279	n	0.05	12.5	252	7;18	252	y	0.00	0.0	186	0;0	186	n	0.00	0.0	179	0;0	179	n	0.00	0.0	261	0;0	261	n	0.00	0.0	253	0;0	253	n	0.00	0.0	319	0;0	319	n	ENSMUSG00000062825.16	Actg1	chr11	protein_coding	actin, gamma, cytoplasmic 1
known_NIR_2546	chr11	120275485	120280194	-	120275485;120276691	120276596;120280194	ES	ENSMUST00000044271.15	known	0.00	0	133.5	0	154;113	n	0.03	3	91.0	3	102;80	y	0.01	3	211.5	3	246;177	y	0.01	2	141.0	2	163;119	y	0.01	2	174.0	2	197;151	y	0.02	2	103.0	2	102;104	y	0.03	6	169.5	6	201;138	y	0.00	0	81.0	0	91;71	n	0.02	2	105.0	2	116;94	y	0.05	9	174.0	9	194;154	y	0.01	1	125.5	1	143;108	n	0.03	5	156.5	5	174;139	y	ENSMUSG00000039703.16	Nploc4	chr11	protein_coding	NPL4 homolog, ubiquitin recognition factor
known_NIR_2547	chr11	120347988	120348669	-	120347988	120348639	A5SS	ENSMUST00000044007.3	known	0.09	4	41	4	41	y	0.11	4	32	4	32	y	0.00	0	7	0	7	n	0.14	6	36	6	36	y	0.14	9	54	9	54	y	0.17	3	15	3	15	y	0.11	5	41	5	41	y	0.13	2	13	2	13	y	0.13	4	27	4	27	y	0.20	16	64	16	64	y	0.20	11	44	11	44	y	0.17	9	43	9	43	y	ENSMUSG00000039670.3	Oxld1	chr11	protein_coding	oxidoreductase like domain containing 1
known_NIR_2548	chr11	120349571	120349782	+	120349571	120350868	A3SS	ENSMUST00000058370.14	known	0.09	1	10	1	10	n	0.41	7	10	7	10	y	0.06	1	15	1	15	n	0.38	5	8	5	8	y	0.12	3	22	3	22	y	0.00	0	2	0	2	n	0.25	3	9	3	9	y	0.00	0	9	0	9	n	0.25	3	9	3	9	y	0.06	1	16	1	16	n	0.00	0	9	0	9	n	0.12	2	14	2	14	y	ENSMUSG00000049957.15	Ccdc137	chr11	protein_coding	coiled-coil domain containing 137
known_NIR_2549	chr11	120349571	120350536	+	120349571	120350868	A3SS	ENSMUST00000058370.14	known	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.06	1	15	1	15	n	0.00	0	8	0	8	n	0.04	1	22	1	22	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.11	2	16	2	16	y	0.00	0	9	0	9	n	0.07	1	14	1	14	n	ENSMUSG00000049957.15	Ccdc137	chr11	protein_coding	coiled-coil domain containing 137
known_NIR_2550	chr11	120356647	120357480	-	120356925	120357480	A3SS	ENSMUST00000154136.8	known	0.00	0	19	0	19	n	0.07	2	25	2	25	y	0.00	0	27	0	27	n	0.09	2	20	2	20	y	0.04	2	51	2	51	y	0.00	0	14	0	14	n	0.00	0	26	0	26	n	0.00	0	22	0	22	n	0.04	1	22	1	22	n	0.06	2	31	2	31	y	0.00	0	22	0	22	n	0.10	3	27	3	27	y	ENSMUSG00000057594.13	Arl16	chr11	protein_coding	ADP-ribosylation factor-like 16
known_NIR_2551	chr11	120356647;120356925	120356810;120357480	-	120356647	120357480	cassetteExon	ENSMUST00000124970.8	known	1.00	27.0	0	35;19	0	n	0.92	24.5	2	24;25	2	y	1.00	28.0	0	29;27	0	n	0.93	27.0	2	34;20	2	y	0.96	47.0	2	43;51	2	y	1.00	14.0	0	14;14	0	n	1.00	36.5	0	47;26	0	n	1.00	25.0	0	28;22	0	n	0.97	28.0	1	34;22	1	n	0.94	33.5	2	36;31	2	y	1.00	26.5	0	31;22	0	n	0.90	27.0	3	27;27	3	y	ENSMUSG00000057594.13	Arl16	chr11	protein_coding	ADP-ribosylation factor-like 16
known_NIR_2552	chr11	120357558	120358008	-	120357593	120358008	A3SS	ENSMUST00000143233.8	known	0.04	1	24	1	24	n	0.17	5	25	5	25	y	0.21	7	27	7	27	y	0.14	5	31	5	31	y	0.14	6	37	6	37	y	0.12	2	15	2	15	y	0.18	6	28	6	28	y	0.16	3	16	3	16	y	0.08	2	23	2	23	y	0.00	0	38	0	38	n	0.07	2	26	2	26	y	0.11	4	34	4	34	y	ENSMUSG00000057594.13	Arl16	chr11	protein_coding	ADP-ribosylation factor-like 16
known_NIR_2553	chr11	120369580	120369913	+	120369580	120369916	A3SS	ENSMUST00000106205.9	known	0.38	30	50	30	50	y	0.42	30	41	30	41	y	0.28	25	64	25	64	y	0.30	29	67	29	67	y	0.28	34	86	34	86	y	0.35	17	31	17	31	y	0.29	32	79	32	79	y	0.43	22	29	22	29	y	0.26	21	59	21	59	y	0.36	43	75	43	75	y	0.29	21	51	21	51	y	0.36	31	54	31	54	y	ENSMUSG00000025793.18	Hgs	chr11	protein_coding	HGF-regulated tyrosine kinase substrate
known_NIR_2554	chr11	120418029	120422259	-	120418029	120421167	5pMXE	ENSMUST00000140989.2	known	0.05	12	238	12	238	y	0.06	14	202	14	202	y	0.09	10	102	10	102	y	0.06	12	185	12	185	y	0.04	11	286	11	286	y	0.04	5	108	5	108	y	0.08	24	265	24	265	y	0.06	7	102	7	102	y	0.05	9	161	9	161	y	0.06	14	234	14	234	y	0.08	17	205	17	205	y	0.12	25	175	25	175	y	ENSMUSG00000084983.8	Gm11789	chr11	lncRNA	predicted gene 11789
known_NIR_2555	chr11	120418029	120422259	-	120418029;120421301	120421167;120422259	ES	ENSMUST00000139357.8	known	0.05	12	209.0	12	238;180	y	0.07	14	191.0	14	202;180	y	0.09	10	96.0	10	102;90	y	0.06	12	195.0	12	185;205	y	0.04	11	269.5	11	286;253	y	0.05	5	102.5	5	108;97	y	0.08	24	271.5	24	265;278	y	0.06	7	104.0	7	102;106	y	0.06	9	152.5	9	161;144	y	0.05	14	263.5	14	234;293	y	0.07	17	215.5	17	205;226	y	0.12	25	181.0	25	175;187	y	ENSMUSG00000084983.8	Gm11789	chr11	lncRNA	predicted gene 11789
known_NIR_2556	chr11	120418029	120422259	-	120421301	120422259	3pMXE	ENSMUST00000123579.2	known	0.06	12	180	12	180	y	0.07	14	180	14	180	y	0.10	10	90	10	90	y	0.06	12	205	12	205	y	0.04	11	253	11	253	y	0.05	5	97	5	97	y	0.08	24	278	24	278	y	0.06	7	106	7	106	y	0.06	9	144	9	144	y	0.05	14	293	14	293	y	0.07	17	226	17	226	y	0.12	25	187	25	187	y	ENSMUSG00000084983.8	Gm11789	chr11	lncRNA	predicted gene 11789
known_NIR_2557	chr11	120419985	120421167	-	120418029	120421167	A3SS	ENSMUST00000140989.2	known	0.15	43	238	43	238	y	0.19	46	202	46	202	y	0.11	13	102	13	102	y	0.18	40	185	40	185	y	0.11	36	286	36	286	y	0.05	6	108	6	108	y	0.17	56	265	56	265	y	0.21	27	102	27	102	y	0.19	37	161	37	161	y	0.16	46	234	46	234	y	0.22	59	205	59	205	y	0.20	45	175	45	175	y	ENSMUSG00000084983.8	Gm11789	chr11	lncRNA	predicted gene 11789
known_NIR_2558	chr11	120425844	120426845	+	120425844	120426886	A3SS	ENSMUST00000026119.8	known	0.02	14	802	14	802	y	0.01	13	877	13	877	y	0.03	12	359	12	359	y	0.01	14	995	14	995	y	0.01	11	1127	11	1127	y	0.02	5	273	5	273	y	0.01	12	1122	12	1122	y	0.01	4	414	4	414	y	0.02	17	787	17	787	y	0.01	17	1173	17	1173	y	0.01	12	866	12	866	y	0.02	16	970	16	970	y	ENSMUSG00000025127.16	Gcgr	chr11	protein_coding	glucagon receptor
known_NIR_2559	chr11	120426993	120427076	+	120426993	120427071	A3SS	ENSMUST00000026119.8	known	0.12	113	806	113	806	y	0.10	100	894	100	894	y	0.13	45	311	45	311	y	0.12	133	1001	133	1001	y	0.12	154	1136	154	1136	y	0.12	38	282	38	282	y	0.11	132	1053	132	1053	y	0.15	68	393	68	393	y	0.11	91	754	91	754	y	0.12	154	1149	154	1149	y	0.09	89	853	89	853	y	0.11	112	917	112	917	y	ENSMUSG00000025127.16	Gcgr	chr11	protein_coding	glucagon receptor
known_NIR_2560	chr11	120453371	120453481	-	120453371	120463483	A5SS	ENSMUST00000168360.2	known	1.00	3982	0	3982	0	n	1.00	4066	2	4066	2	y	1.00	8476	0	8476	0	n	1.00	4091	0	4091	0	n	1.00	7238	2	7238	2	y	1.00	5062	4	5062	4	y	1.00	6239	0	6239	0	n	1.00	5123	4	5123	4	y	1.00	3623	1	3623	1	n	1.00	5846	2	5846	2	y	1.00	4797	0	4797	0	n	1.00	4456	0	4456	0	n	ENSMUSG00000025130.12	P4hb	chr11	protein_coding	prolyl 4-hydroxylase, beta polypeptide
known_NIR_2561	chr11	120462553	120463483	-	120453371	120463483	A3SS	ENSMUST00000168360.2	known	1.00	1993	0	1993	0	n	1.00	1577	2	1577	2	y	1.00	4723	0	4723	0	n	1.00	2497	0	2497	0	n	1.00	4505	2	4505	2	y	1.00	3181	4	3181	4	y	1.00	2893	0	2893	0	n	1.00	3220	4	3220	4	y	1.00	1796	1	1796	1	n	1.00	3113	2	3113	2	y	1.00	2328	0	2328	0	n	1.00	2416	0	2416	0	n	ENSMUSG00000025130.12	P4hb	chr11	protein_coding	prolyl 4-hydroxylase, beta polypeptide
known_NIR_2562	chr11	120471219	120471816	-	120471219	120472348	A5SS	ENSMUST00000106197.10	known	0.02	4	227	4	227	y	0.02	3	181	3	181	y	0.01	5	416	5	416	y	0.01	2	222	2	222	y	0.02	7	290	7	290	y	0.02	4	214	4	214	y	0.04	11	252	11	252	y	0.01	2	168	2	168	y	0.02	3	162	3	162	y	0.00	0	197	0	197	n	0.02	3	177	3	177	y	0.02	4	239	4	239	y	ENSMUSG00000025132.14	Arhgdia	chr11	protein_coding	Rho GDP dissociation inhibitor (GDI) alpha
known_NIR_2563	chr11	120486144	120486434	-	120486144	120486746	A5SS	ENSMUST00000026125.3	known	0.14	8	49	8	49	y	0.08	7	79	7	79	y	0.09	10	98	10	98	y	0.06	5	82	5	82	y	0.08	7	80	7	80	y	0.08	4	49	4	49	y	0.11	8	68	8	68	y	0.06	3	44	3	44	y	0.04	3	68	3	68	y	0.10	10	89	10	89	y	0.10	8	74	8	74	y	0.08	7	84	7	84	y	ENSMUSG00000025134.3	Alyref	chr11	protein_coding	Aly/REF export factor
known_NIR_2564	chr11	120489696	120490068	+	120489430	120490068	A5SS	ENSMUST00000026128.10	known	0.16	16	85	16	85	y	0.24	23	72	23	72	y	0.18	17	75	17	75	y	0.18	17	80	17	80	y	0.19	22	95	22	95	y	0.06	4	59	4	59	y	0.09	12	115	12	115	y	0.12	5	37	5	37	y	0.17	14	67	14	67	y	0.16	23	117	23	117	y	0.18	19	85	19	85	y	0.18	22	102	22	102	y	ENSMUSG00000025135.13	Anapc11	chr11	protein_coding	anaphase promoting complex subunit 11
known_NIR_2565	chr11	120495011	120496107	+	120490194	120496107	A5SS	ENSMUST00000026128.10	known	0.00	0	170	0	170	n	0.00	0	179	0	179	n	0.01	1	125	1	125	n	0.01	2	133	2	133	y	0.00	0	183	0	183	n	0.00	0	97	0	97	n	0.00	0	200	0	200	n	0.00	0	76	0	76	n	0.00	0	123	0	123	n	0.00	0	198	0	198	n	0.00	0	166	0	166	n	0.01	1	162	1	162	n	ENSMUSG00000025135.13	Anapc11	chr11	protein_coding	anaphase promoting complex subunit 11
known_NIR_2566	chr11	120503427	120503672	-	120503427	120503856	A5SS	ENSMUST00000026129.16	known	0.26	179	517	179	517	y	0.28	163	421	163	421	y	0.25	128	382	128	382	y	0.27	178	490	178	490	y	0.30	263	603	263	603	y	0.32	113	236	113	236	y	0.25	217	656	217	656	y	0.29	110	265	110	265	y	0.24	164	533	164	533	y	0.24	271	870	271	870	y	0.25	215	657	215	657	y	0.24	246	774	246	774	y	ENSMUSG00000025137.16	Pcyt2	chr11	protein_coding	phosphate cytidylyltransferase 2, ethanolamine
known_NIR_2567	chr11	120503427	120504205	-	120503427	120503856	5pMXE	ENSMUST00000134671.2	known	0.15	94	517	94	517	y	0.19	96	421	96	421	y	0.08	32	382	32	382	y	0.16	95	490	95	490	y	0.11	75	603	75	603	y	0.10	25	236	25	236	y	0.10	72	656	72	656	y	0.08	23	265	23	265	y	0.11	69	533	69	533	y	0.07	69	870	69	870	y	0.08	60	657	60	657	y	0.09	74	774	74	774	y	ENSMUSG00000025137.16	Pcyt2	chr11	protein_coding	phosphate cytidylyltransferase 2, ethanolamine
known_NIR_2568	chr11	120503427	120504205	-	120503427;120503909	120503856;120504205	ES	ENSMUST00000026129.16	known	0.12	94	679.0	94	517;841	y	0.14	96	582.5	96	421;744	y	0.06	32	530.0	32	382;678	y	0.12	95	667.0	95	490;844	y	0.08	75	849.0	75	603;1095	y	0.07	25	346.0	25	236;456	y	0.08	72	847.0	72	656;1038	y	0.06	23	394.0	23	265;523	y	0.09	69	698.0	69	533;863	y	0.06	69	1121.5	69	870;1373	y	0.06	60	883.0	60	657;1109	y	0.07	74	1018.5	74	774;1263	y	ENSMUSG00000025137.16	Pcyt2	chr11	protein_coding	phosphate cytidylyltransferase 2, ethanolamine
known_NIR_2569	chr11	120503427	120504205	-	120503909	120504205	A3SS	ENSMUST00000124468.8	known	0.10	94	841	94	841	y	0.11	96	744	96	744	y	0.05	32	678	32	678	y	0.10	95	844	95	844	y	0.06	75	1095	75	1095	y	0.05	25	456	25	456	y	0.06	72	1038	72	1038	y	0.04	23	523	23	523	y	0.07	69	863	69	863	y	0.05	69	1373	69	1373	y	0.05	60	1109	60	1109	y	0.06	74	1263	74	1263	y	ENSMUSG00000025137.16	Pcyt2	chr11	protein_coding	phosphate cytidylyltransferase 2, ethanolamine
known_NIR_2570	chr11	120503427;120503909	120503672;120504205	-	120503427	120504205	cassetteExon	ENSMUST00000106188.4	known	0.84	510.0	94	179;841	94	y	0.83	453.5	96	163;744	96	y	0.93	403.0	32	128;678	32	y	0.84	511.0	95	178;844	95	y	0.90	679.0	75	263;1095	75	y	0.92	284.5	25	113;456	25	y	0.90	627.5	72	217;1038	72	y	0.93	316.5	23	110;523	23	y	0.88	513.5	69	164;863	69	y	0.92	822.0	69	271;1373	69	y	0.92	662.0	60	215;1109	60	y	0.91	754.5	74	246;1263	74	y	ENSMUSG00000025137.16	Pcyt2	chr11	protein_coding	phosphate cytidylyltransferase 2, ethanolamine
known_NIR_2571	chr11	120504600	120505157	-	120504551	120505157	A3SS	ENSMUST00000026129.16	known	0.01	9	971	9	971	y	0.02	14	853	14	853	y	0.01	10	768	10	768	y	0.01	11	975	11	975	y	0.02	26	1343	26	1343	y	0.02	11	480	11	480	y	0.01	13	1180	13	1180	y	0.01	9	604	9	604	y	0.00	0	1014	0	1014	n	0.02	28	1551	28	1551	y	0.02	24	1206	24	1206	y	0.02	26	1496	26	1496	y	ENSMUSG00000025137.16	Pcyt2	chr11	protein_coding	phosphate cytidylyltransferase 2, ethanolamine
known_NIR_2572	chr11	120509875	120510509	-	120509875	120509975	5pMXE	ENSMUST00000154714.2	known	0.09	2	21	2	21	y	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.07	1	14	1	14	n	0.03	1	32	1	32	n	0.00	0	8	0	8	n	0.00	0	39	0	39	n	0.00	0	8	0	8	n	0.00	0	17	0	17	n	0.00	0	30	0	30	n	0.12	3	22	3	22	y	0.12	3	21	3	21	y	ENSMUSG00000025138.15	Sirt7	chr11	protein_coding	sirtuin 7
known_NIR_2573	chr11	120509875	120510989	-	120509875	120509975	5pMXE	ENSMUST00000154714.2	known	0.86	129	21	129	21	y	0.94	131	9	131	9	y	0.88	59	8	59	8	y	0.91	136	14	136	14	y	0.84	170	32	170	32	y	0.86	51	8	51	8	y	0.81	164	39	164	39	y	0.88	61	8	61	8	y	0.88	126	17	126	17	y	0.86	182	30	182	30	y	0.88	155	22	155	22	y	0.88	149	21	149	21	y	ENSMUSG00000025138.15	Sirt7	chr11	protein_coding	sirtuin 7
known_NIR_2574	chr11	120509875;120510116	120509975;120510989	-	120509875	120510989	cassetteExon	ENSMUST00000153532.8	known	0.15	22.0	129	21;23	129	y	0.07	10.0	131	9;11	131	y	0.11	7.0	59	8;6	59	y	0.11	16.0	136	14;18	136	y	0.12	23.0	170	32;14	170	y	0.11	6.0	51	8;4	51	y	0.13	24.5	164	39;10	164	y	0.08	5.0	61	8;2	61	y	0.12	16.5	126	17;16	126	y	0.13	28.0	182	30;26	182	y	0.11	19.5	155	22;17	155	y	0.12	21.0	149	21;21	149	y	ENSMUSG00000025138.15	Sirt7	chr11	protein_coding	sirtuin 7
known_NIR_2575	chr11	120514891	120515316	-	120513037	120515316	A3SS	ENSMUST00000153532.8	known	0.08	9	107	9	107	y	0.00	0	65	0	65	n	0.04	2	55	2	55	y	0.04	4	103	4	103	y	0.02	3	137	3	137	y	0.12	4	30	4	30	y	0.05	6	119	6	119	y	0.04	2	46	2	46	y	0.03	4	120	4	120	y	0.06	8	131	8	131	y	0.03	3	106	3	106	y	0.02	3	119	3	119	y	ENSMUSG00000025138.15	Sirt7	chr11	protein_coding	sirtuin 7
known_NIR_2576	chr11	120520707	120520812	-	120520707	120524188	A5SS	ENSMUST00000058162.14	known	0.50	3	3	3	3	n	0.00	0	6	0	6	n	0.08	1	11	1	11	n	0.21	3	11	3	11	y	0.07	1	14	1	14	n	0.14	1	6	1	6	n	0.46	6	7	6	7	y	0.40	2	3	2	3	n	0.57	8	6	8	6	y	0.36	5	9	5	9	y	0.14	1	6	1	6	n	0.12	2	15	2	15	y	ENSMUSG00000051510.14	Mafg	chr11	protein_coding	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)
known_NIR_2577	chr11	120520707	120521314	-	120520707	120520812	5pMXE	ENSMUST00000106180.2	known	0.96	68	3	68	3	y	1.00	60	0	60	0	n	0.98	47	1	47	1	n	0.96	74	3	74	3	y	0.99	111	1	111	1	n	0.98	59	1	59	1	n	0.94	99	6	99	6	y	0.95	38	2	38	2	y	0.90	69	8	69	8	y	0.93	64	5	64	5	y	0.98	60	1	60	1	n	0.97	63	2	63	2	y	ENSMUSG00000051510.14	Mafg	chr11	protein_coding	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)
known_NIR_2578	chr11	120520707	120521314	-	120520707	120524188	A5SS	ENSMUST00000058162.14	known	0.96	68	3	68	3	y	0.91	60	6	60	6	y	0.81	47	11	47	11	y	0.87	74	11	74	11	y	0.89	111	14	111	14	y	0.91	59	6	59	6	y	0.93	99	7	99	7	y	0.93	38	3	38	3	y	0.92	69	6	69	6	y	0.88	64	9	64	9	y	0.91	60	6	60	6	y	0.81	63	15	63	15	y	ENSMUSG00000051510.14	Mafg	chr11	protein_coding	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)
known_NIR_2579	chr11	120520707;120520842	120520812;120521314	-	120520707	120521314	cassetteExon	ENSMUST00000106182.8	known	0.03	2.0	68	3;1	68	n	0.01	0.5	60	0;1	60	n	0.01	0.5	47	1;0	47	n	0.03	2.0	74	3;1	74	n	0.00	0.5	111	1;0	111	n	0.01	0.5	59	1;0	59	n	0.04	4.5	99	6;3	99	y	0.03	1.0	38	2;0	38	n	0.07	5.0	69	8;2	69	y	0.05	3.5	64	5;2	64	y	0.01	0.5	60	1;0	60	n	0.02	1.5	63	2;1	63	n	ENSMUSG00000051510.14	Mafg	chr11	protein_coding	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)
known_NIR_2580	chr11	120522266	120524188	-	120520707	120524188	A3SS	ENSMUST00000058162.14	known	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.12	2	14	2	14	y	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	ENSMUSG00000051510.14	Mafg	chr11	protein_coding	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)
known_NIR_2581	chr11	120551191	120551947	-	120551191	120551615	5pMXE	ENSMUST00000106178.9	known	0.25	2	6	2	6	n	0.50	1	1	1	1	n	1.00	2	0	2	0	n	0.29	2	5	2	5	n	0.38	3	5	3	5	n	-	-	-	-	-	-	0.29	2	5	2	5	n	1.00	1	0	1	0	n	0.50	3	3	3	3	n	0.57	8	6	8	6	y	0.00	0	3	0	3	n	0.45	5	6	5	6	y	ENSMUSG00000042988.11	Notum	chr11	protein_coding	notum palmitoleoyl-protein carboxylesterase
known_NIR_2582	chr11	120563969	120564866	+	120563996	120564866	A5SS	ENSMUST00000169964.2	known	0.00	0	89	0	89	n	0.00	0	59	0	59	n	0.00	0	70	0	70	n	0.02	2	89	2	89	y	0.06	7	117	7	117	y	0.00	0	57	0	57	n	0.00	0	122	0	122	n	0.00	0	41	0	41	n	0.03	2	69	2	69	y	0.03	3	102	3	102	y	0.04	4	89	4	89	y	0.00	0	89	0	89	n	ENSMUSG00000025142.19	Aspscr1	chr11	protein_coding	alveolar soft part sarcoma chromosome region, candidate 1 (human)
known_NIR_2583	chr11	120563996	120568337	+	120563996	120564866	3pMXE	ENSMUST00000169964.2	known	0.00	0	89	0	89	n	0.03	2	59	2	59	y	0.00	0	70	0	70	n	0.00	0	89	0	89	n	0.00	0	117	0	117	n	0.00	0	57	0	57	n	0.00	0	122	0	122	n	0.00	0	41	0	41	n	0.00	0	69	0	69	n	0.00	0	102	0	102	n	0.01	1	89	1	89	n	0.00	0	89	0	89	n	ENSMUSG00000025142.19	Aspscr1	chr11	protein_coding	alveolar soft part sarcoma chromosome region, candidate 1 (human)
known_NIR_2584	chr11	120563996	120568337	+	120563996;120564921	120564866;120568337	ES	ENSMUST00000026135.15	known	0.00	0	138.0	0	89;187	n	0.02	2	97.5	2	59;136	y	0.00	0	116.5	0	70;163	n	0.00	0	129.0	0	89;169	n	0.00	0	177.0	0	117;237	n	0.00	0	87.0	0	57;117	n	0.00	0	183.5	0	122;245	n	0.00	0	65.5	0	41;90	n	0.00	0	100.5	0	69;132	n	0.00	0	165.5	0	102;229	n	0.01	1	132.5	1	89;176	n	0.00	0	136.0	0	89;183	n	ENSMUSG00000025142.19	Aspscr1	chr11	protein_coding	alveolar soft part sarcoma chromosome region, candidate 1 (human)
known_NIR_2585	chr11	120564233	120564866	+	120563969	120564866	A5SS	ENSMUST00000171700.2	known	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.30	3	7	3	7	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.20	1	4	1	4	n	-	-	-	-	-	-	ENSMUSG00000025142.19	Aspscr1	chr11	protein_coding	alveolar soft part sarcoma chromosome region, candidate 1 (human)
known_NIR_2586	chr11	120564233	120564866	+	120563996	120564866	A5SS	ENSMUST00000169964.2	known	0.00	0	89	0	89	n	0.02	1	59	1	59	n	0.00	0	70	0	70	n	0.01	1	89	1	89	n	0.03	3	117	3	117	y	0.00	0	57	0	57	n	0.00	0	122	0	122	n	0.00	0	41	0	41	n	0.00	0	69	0	69	n	0.00	0	102	0	102	n	0.01	1	89	1	89	n	0.00	0	89	0	89	n	ENSMUSG00000025142.19	Aspscr1	chr11	protein_coding	alveolar soft part sarcoma chromosome region, candidate 1 (human)
known_NIR_2587	chr11	120564233	120564866	+	120564440	120564866	A5SS	ENSMUST00000135346.8	known	0.00	0	42	0	42	n	0.05	1	19	1	19	n	0.00	0	42	0	42	n	0.03	1	37	1	37	n	0.07	3	39	3	39	y	0.00	0	22	0	22	n	0.00	0	48	0	48	n	0.00	0	20	0	20	n	0.00	0	25	0	25	n	0.00	0	43	0	43	n	0.04	1	25	1	25	n	0.00	0	29	0	29	n	ENSMUSG00000025142.19	Aspscr1	chr11	protein_coding	alveolar soft part sarcoma chromosome region, candidate 1 (human)
known_NIR_2588	chr11	120564388	120564866	+	120563969	120564866	A5SS	ENSMUST00000171700.2	known	1.00	2	0	2	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.36	4	7	4	7	y	-	-	-	-	-	-	1.00	2	0	2	0	n	-	-	-	-	-	-	0.50	2	2	2	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	ENSMUSG00000025142.19	Aspscr1	chr11	protein_coding	alveolar soft part sarcoma chromosome region, candidate 1 (human)
known_NIR_2589	chr11	120564388	120564866	+	120563996	120564866	A5SS	ENSMUST00000169964.2	known	0.02	2	89	2	89	y	0.00	0	59	0	59	n	0.00	0	70	0	70	n	0.00	0	89	0	89	n	0.03	4	117	4	117	y	0.00	0	57	0	57	n	0.02	2	122	2	122	y	0.00	0	41	0	41	n	0.03	2	69	2	69	y	0.00	0	102	0	102	n	0.00	0	89	0	89	n	0.00	0	89	0	89	n	ENSMUSG00000025142.19	Aspscr1	chr11	protein_coding	alveolar soft part sarcoma chromosome region, candidate 1 (human)
known_NIR_2590	chr11	120564388	120564866	+	120564440	120564866	A5SS	ENSMUST00000135346.8	known	0.05	2	42	2	42	y	0.00	0	19	0	19	n	0.00	0	42	0	42	n	0.00	0	37	0	37	n	0.09	4	39	4	39	y	0.00	0	22	0	22	n	0.04	2	48	2	48	y	0.00	0	20	0	20	n	0.07	2	25	2	25	y	0.00	0	43	0	43	n	0.00	0	25	0	25	n	0.00	0	29	0	29	n	ENSMUSG00000025142.19	Aspscr1	chr11	protein_coding	alveolar soft part sarcoma chromosome region, candidate 1 (human)
known_NIR_2591	chr11	120564388	120564866	+	120564627	120564866	A5SS	ENSMUST00000149389.8	known	0.13	2	13	2	13	y	0.00	0	5	0	5	n	0.00	0	15	0	15	n	0.00	0	11	0	11	n	0.20	4	16	4	16	y	0.00	0	3	0	3	n	0.11	2	16	2	16	y	0.00	0	11	0	11	n	0.17	2	10	2	10	y	0.00	0	19	0	19	n	0.00	0	7	0	7	n	0.00	0	16	0	16	n	ENSMUSG00000025142.19	Aspscr1	chr11	protein_coding	alveolar soft part sarcoma chromosome region, candidate 1 (human)
known_NIR_2592	chr11	120564440	120564866	+	120563969	120564866	A5SS	ENSMUST00000171700.2	known	1.00	42	0	42	0	n	1.00	19	0	19	0	n	1.00	42	0	42	0	n	0.95	37	2	37	2	y	0.85	39	7	39	7	y	1.00	22	0	22	0	n	1.00	48	0	48	0	n	1.00	20	0	20	0	n	0.93	25	2	25	2	y	0.93	43	3	43	3	y	0.86	25	4	25	4	y	1.00	29	0	29	0	n	ENSMUSG00000025142.19	Aspscr1	chr11	protein_coding	alveolar soft part sarcoma chromosome region, candidate 1 (human)
known_NIR_2593	chr11	120564440	120564866	+	120563996	120564866	A5SS	ENSMUST00000169964.2	known	0.32	42	89	42	89	y	0.24	19	59	19	59	y	0.38	42	70	42	70	y	0.29	37	89	37	89	y	0.25	39	117	39	117	y	0.28	22	57	22	57	y	0.28	48	122	48	122	y	0.33	20	41	20	41	y	0.27	25	69	25	69	y	0.30	43	102	43	102	y	0.22	25	89	25	89	y	0.25	29	89	29	89	y	ENSMUSG00000025142.19	Aspscr1	chr11	protein_coding	alveolar soft part sarcoma chromosome region, candidate 1 (human)
known_NIR_2594	chr11	120564627	120564866	+	120563969	120564866	A5SS	ENSMUST00000171700.2	known	1.00	13	0	13	0	n	1.00	5	0	5	0	n	1.00	15	0	15	0	n	0.85	11	2	11	2	y	0.70	16	7	16	7	y	1.00	3	0	3	0	n	1.00	16	0	16	0	n	1.00	11	0	11	0	n	0.83	10	2	10	2	y	0.86	19	3	19	3	y	0.64	7	4	7	4	y	1.00	16	0	16	0	n	ENSMUSG00000025142.19	Aspscr1	chr11	protein_coding	alveolar soft part sarcoma chromosome region, candidate 1 (human)
known_NIR_2595	chr11	120564627	120564866	+	120563996	120564866	A5SS	ENSMUST00000169964.2	known	0.13	13	89	13	89	y	0.08	5	59	5	59	y	0.18	15	70	15	70	y	0.11	11	89	11	89	y	0.12	16	117	16	117	y	0.05	3	57	3	57	y	0.12	16	122	16	122	y	0.21	11	41	11	41	y	0.13	10	69	10	69	y	0.16	19	102	19	102	y	0.07	7	89	7	89	y	0.15	16	89	16	89	y	ENSMUSG00000025142.19	Aspscr1	chr11	protein_coding	alveolar soft part sarcoma chromosome region, candidate 1 (human)
known_NIR_2596	chr11	120564627	120564866	+	120564233	120564866	A5SS	ENSMUST00000131727.9	known	1.00	13	0	13	0	n	0.83	5	1	5	1	n	1.00	15	0	15	0	n	0.92	11	1	11	1	n	0.84	16	3	16	3	y	1.00	3	0	3	0	n	1.00	16	0	16	0	n	1.00	11	0	11	0	n	1.00	10	0	10	0	n	1.00	19	0	19	0	n	0.88	7	1	7	1	n	1.00	16	0	16	0	n	ENSMUSG00000025142.19	Aspscr1	chr11	protein_coding	alveolar soft part sarcoma chromosome region, candidate 1 (human)
known_NIR_2597	chr11	120564627	120564866	+	120564440	120564866	A5SS	ENSMUST00000135346.8	known	0.24	13	42	13	42	y	0.21	5	19	5	19	y	0.26	15	42	15	42	y	0.23	11	37	11	37	y	0.29	16	39	16	39	y	0.12	3	22	3	22	y	0.25	16	48	16	48	y	0.35	11	20	11	20	y	0.29	10	25	10	25	y	0.31	19	43	19	43	y	0.22	7	25	7	25	y	0.36	16	29	16	29	y	ENSMUSG00000025142.19	Aspscr1	chr11	protein_coding	alveolar soft part sarcoma chromosome region, candidate 1 (human)
known_NIR_2598	chr11	120568250	120568337	+	120564921	120568337	A5SS	ENSMUST00000026135.15	known	0.02	3	187	3	187	y	0.02	3	136	3	136	y	0.00	0	163	0	163	n	0.00	0	169	0	169	n	0.00	0	237	0	237	n	0.00	0	117	0	117	n	0.00	0	245	0	245	n	0.01	1	90	1	90	n	0.01	1	132	1	132	n	0.01	2	229	2	229	y	0.00	0	176	0	176	n	0.01	2	183	2	183	y	ENSMUSG00000025142.19	Aspscr1	chr11	protein_coding	alveolar soft part sarcoma chromosome region, candidate 1 (human)
known_NIR_2599	chr11	120593376	120594898	+	120593376;120594491	120594429;120594898	ES	ENSMUST00000026135.15	known	0.10	24	208.5	24	174;243	y	0.14	37	225.0	37	184;266	y	0.09	18	174.5	18	144;205	y	0.11	22	187.0	22	151;223	y	0.07	19	244.5	19	220;269	y	0.07	9	116.5	9	92;141	y	0.07	21	291.0	21	243;339	y	0.05	6	106.0	6	87;125	y	0.05	11	193.5	11	156;231	y	0.11	29	232.0	29	188;276	y	0.10	26	247.0	26	208;286	y	0.09	23	243.0	23	194;292	y	ENSMUSG00000025142.19	Aspscr1	chr11	protein_coding	alveolar soft part sarcoma chromosome region, candidate 1 (human)
known_NIR_2600	chr11	120599825	120599938	+	120599825	120599897	A3SS	ENSMUST00000026135.15	known	0.11	25	195	25	195	y	0.07	17	228	17	228	y	0.07	11	152	11	152	y	0.07	12	171	12	171	y	0.11	31	246	31	246	y	0.09	10	103	10	103	y	0.10	27	253	27	253	y	0.06	7	101	7	101	y	0.07	12	170	12	170	y	0.09	26	252	26	252	y	0.12	34	247	34	247	y	0.05	14	247	14	247	y	ENSMUSG00000025142.19	Aspscr1	chr11	protein_coding	alveolar soft part sarcoma chromosome region, candidate 1 (human)
known_NIR_2601	chr11	120602304	120602529	-	120602327	120602529	A3SS	ENSMUST00000128543.2	known	0.99	214	3	214	3	y	1.00	240	1	240	1	n	0.99	153	2	153	2	y	0.98	174	3	174	3	y	0.99	276	2	276	2	y	1.00	97	0	97	0	n	0.99	266	2	266	2	y	0.98	115	2	115	2	y	0.99	168	2	168	2	y	0.99	291	2	291	2	y	1.00	264	0	264	0	n	0.97	216	6	216	6	y	ENSMUSG00000025144.18	Cenpx	chr11	protein_coding	centromere protein X
known_NIR_2602	chr11	120602721	120604519	-	120602721;120603538	120603266;120604519	ES	ENSMUST00000106154.8	known	0.95	102	5.5	102	7;4	y	0.97	106	3.5	106	5;2	y	0.82	65	14.5	65	22;7	y	0.96	88	3.5	88	5;2	y	0.91	129	13.0	129	19;7	y	0.86	51	8.0	51	13;3	y	0.93	137	10.5	137	12;9	y	0.86	43	7.0	43	10;4	y	0.97	107	3.0	107	4;2	y	0.93	134	10.0	134	16;4	y	0.95	140	8.0	140	9;7	y	0.97	109	3.5	109	7;0	n	ENSMUSG00000025144.18	Cenpx	chr11	protein_coding	centromere protein X
known_NIR_2603	chr11	120604879	120604994	+	120604879	120605099	A3SS	ENSMUST00000026139.14	known	0.08	1	11	1	11	n	0.00	0	6	0	6	n	0.30	3	7	3	7	y	0.00	0	6	0	6	n	0.06	1	17	1	17	n	0.00	0	9	0	9	n	0.06	1	15	1	15	n	0.33	3	6	3	6	n	0.00	0	8	0	8	n	0.14	1	6	1	6	n	0.20	2	8	2	8	y	0.14	2	12	2	12	y	ENSMUSG00000025145.14	Lrrc45	chr11	protein_coding	leucine rich repeat containing 45
known_NIR_2604	chr11	120616832	120616914	-	120616722	120616914	A3SS	ENSMUST00000106148.10	known	0.71	450	185	450	185	y	0.67	342	172	342	172	y	0.61	39	25	39	25	y	0.73	417	154	417	154	y	0.73	373	141	373	141	y	0.70	61	26	61	26	y	0.70	430	184	430	184	y	0.66	97	49	97	49	y	0.70	362	152	362	152	y	0.69	496	220	496	220	y	0.73	483	177	483	177	y	0.75	493	165	493	165	y	ENSMUSG00000039450.12	Dcxr	chr11	protein_coding	dicarbonyl L-xylulose reductase
known_NIR_2605	chr11	120675168	120675947	+	120675551	120675947	5pMXE	ENSMUST00000172809.2	known	0.64	54	31	54	31	y	0.77	37	11	37	11	y	0.68	67	32	67	32	y	0.60	46	31	46	31	y	0.67	85	41	85	41	y	0.81	57	13	57	13	y	0.62	51	31	51	31	y	0.73	36	13	36	13	y	0.59	41	28	41	28	y	0.69	82	36	82	36	y	0.47	29	33	29	33	y	0.58	61	44	61	44	y	ENSMUSG00000025156.18	Gps1	chr11	protein_coding	G protein pathway suppressor 1
known_NIR_2606	chr11	120677675	120677838	+	120677675	120677835	A3SS	ENSMUST00000153678.8	known	0.05	7	141	7	141	y	0.09	11	115	11	115	y	0.07	15	204	15	204	y	0.03	6	168	6	168	y	0.08	17	190	17	190	y	0.06	6	90	6	90	y	0.07	16	206	16	206	y	0.05	5	93	5	93	y	0.10	16	138	16	138	y	0.07	12	165	12	165	y	0.05	8	153	8	153	y	0.07	13	175	13	175	y	ENSMUSG00000025156.18	Gps1	chr11	protein_coding	G protein pathway suppressor 1
known_NIR_2607	chr11	120685804	120686303	-	120685837	120686303	A3SS	ENSMUST00000106135.8	known	0.05	8	168	8	168	y	0.06	8	127	8	127	y	0.04	7	152	7	152	y	0.10	19	169	19	169	y	0.07	12	166	12	166	y	0.10	9	83	9	83	y	0.06	9	151	9	151	y	0.05	5	100	5	100	y	0.05	6	119	6	119	y	0.06	15	254	15	254	y	0.04	7	150	7	150	y	0.07	12	163	12	163	y	ENSMUSG00000025155.16	Dus1l	chr11	protein_coding	dihydrouridine synthase 1-like (S. cerevisiae)
known_NIR_2608	chr11	120686549	120686765	-	120686549	120686969	A5SS	ENSMUST00000026151.11	known	0.80	28	7	28	7	y	0.89	42	5	42	5	y	0.95	63	3	63	3	y	0.93	37	3	37	3	y	0.90	44	5	44	5	y	0.93	26	2	26	2	y	0.82	31	7	31	7	y	0.86	30	5	30	5	y	0.74	23	8	23	8	y	0.88	37	5	37	5	y	0.98	41	1	41	1	n	0.94	34	2	34	2	y	ENSMUSG00000025155.16	Dus1l	chr11	protein_coding	dihydrouridine synthase 1-like (S. cerevisiae)
known_NIR_2609	chr11	120686549	120686765	-	120686549	120687045	A5SS	ENSMUST00000106135.8	known	0.28	28	72	28	72	y	0.39	42	65	42	65	y	0.44	63	79	63	79	y	0.33	37	74	37	74	y	0.30	44	104	44	104	y	0.37	26	44	26	44	y	0.28	31	81	31	81	y	0.45	30	36	30	36	y	0.24	23	73	23	73	y	0.28	37	97	37	97	y	0.34	41	78	41	78	y	0.32	34	72	34	72	y	ENSMUSG00000025155.16	Dus1l	chr11	protein_coding	dihydrouridine synthase 1-like (S. cerevisiae)
known_NIR_2610	chr11	120686549	120686969	-	120686549	120687045	A5SS	ENSMUST00000106135.8	known	0.09	7	72	7	72	y	0.07	5	65	5	65	y	0.04	3	79	3	79	y	0.04	3	74	3	74	y	0.05	5	104	5	104	y	0.04	2	44	2	44	y	0.08	7	81	7	81	y	0.12	5	36	5	36	y	0.10	8	73	8	73	y	0.05	5	97	5	97	y	0.01	1	78	1	78	n	0.03	2	72	2	72	y	ENSMUSG00000025155.16	Dus1l	chr11	protein_coding	dihydrouridine synthase 1-like (S. cerevisiae)
known_NIR_2611	chr11	120772741	120772839	-	120772741	120776059	A5SS	ENSMUST00000056781.5	known	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.00	0	6	0	6	n	0.20	1	4	1	4	n	0.20	2	8	2	8	y	ENSMUSG00000048445.7	Ccdc57	chr11	protein_coding	coiled-coil domain containing 57
known_NIR_2612	chr11	120854732	120858821	-	120850121	120858821	A3SS	ENSMUST00000239115.2	known	0.98	43	1	43	1	n	1.00	33	0	33	0	n	1.00	100	0	100	0	n	0.94	34	2	34	2	y	0.91	41	4	41	4	y	0.96	25	1	25	1	n	0.92	58	5	58	5	y	1.00	20	0	20	0	n	1.00	34	0	34	0	n	1.00	61	0	61	0	n	0.91	41	4	41	4	y	0.98	49	1	49	1	n	ENSMUSG00000025162.19	Csnk1d	chr11	protein_coding	casein kinase 1, delta
known_NIR_2613	chr11	120854732	120858821	-	120854732;120855836	120855774;120858821	ES	ENSMUST00000070575.14	known	0.34	43	82.5	43	78;87	y	0.27	33	90.0	33	85;95	y	0.41	100	145.5	100	150;141	y	0.25	34	100.5	34	93;108	y	0.22	41	145.0	41	157;133	y	0.23	25	84.0	25	87;81	y	0.30	58	133.0	58	133;133	y	0.21	20	74.0	20	78;70	y	0.28	34	86.0	34	84;88	y	0.32	61	128.5	61	129;128	y	0.26	41	115.0	41	121;109	y	0.29	49	122.0	49	121;123	y	ENSMUSG00000025162.19	Csnk1d	chr11	protein_coding	casein kinase 1, delta
known_NIR_2614	chr11	120855836	120858821	-	120850121	120858821	A3SS	ENSMUST00000239115.2	known	0.99	87	1	87	1	n	1.00	95	0	95	0	n	1.00	141	0	141	0	n	0.98	108	2	108	2	y	0.97	133	4	133	4	y	0.99	81	1	81	1	n	0.96	133	5	133	5	y	1.00	70	0	70	0	n	1.00	88	0	88	0	n	1.00	128	0	128	0	n	0.96	109	4	109	4	y	0.99	123	1	123	1	n	ENSMUSG00000025162.19	Csnk1d	chr11	protein_coding	casein kinase 1, delta
known_NIR_2615	chr11	121109564	121111690	+	121109564	121110667	A3SS&ES	ENSMUST00000106117.8	known	0.00	0	18	0	18	n	0.00	0	21	0	21	n	0.04	1	26	1	26	n	0.00	0	14	0	14	n	0.00	0	22	0	22	n	0.12	2	15	2	15	y	0.00	0	18	0	18	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.00	0	30	0	30	n	0.00	0	21	0	21	n	0.00	0	8	0	8	n	ENSMUSG00000039307.17	Hexdc	chr11	protein_coding	hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing
known_NIR_2616	chr11	121109564	121111690	+	121109564;121110749	121110667;121111690	ES	ENSMUST00000038831.15	known	0.00	0	13.5	0	18;9	n	0.00	0	18.0	0	21;15	n	0.04	1	26.0	1	26;26	n	0.00	0	14.5	0	14;15	n	0.00	0	25.0	0	22;28	n	0.15	2	11.5	2	15;8	y	0.00	0	20.0	0	18;22	n	0.00	0	11.0	0	12;10	n	0.00	0	16.5	0	16;17	n	0.00	0	27.0	0	30;24	n	0.00	0	17.5	0	21;14	n	0.00	0	10.5	0	8;13	n	ENSMUSG00000039307.17	Hexdc	chr11	protein_coding	hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing
known_NIR_2617	chr11	121110749	121111909	+	121110749	121111690	A3SS	ENSMUST00000038831.15	known	0.31	4	9	4	9	y	0.00	0	15	0	15	n	0.13	4	26	4	26	y	0.12	2	15	2	15	y	0.12	4	28	4	28	y	0.20	2	8	2	8	y	0.04	1	22	1	22	n	0.29	4	10	4	10	y	0.19	4	17	4	17	y	0.20	6	24	6	24	y	0.07	1	14	1	14	n	0.13	2	13	2	13	y	ENSMUSG00000039307.17	Hexdc	chr11	protein_coding	hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing
known_NIR_2618	chr11	121119296	121119885	-	121119296	121119865	A5SS	ENSMUST00000038709.14	known	0.43	3	4	3	4	n	0.50	2	2	2	2	n	0.17	1	5	1	5	n	0.14	1	6	1	6	n	0.26	5	14	5	14	y	0.40	2	3	2	3	n	0.50	9	9	9	9	y	0.67	4	2	4	2	n	0.22	2	7	2	7	n	0.29	2	5	2	5	n	0.25	2	6	2	6	n	0.42	5	7	5	7	y	ENSMUSG00000039294.15	Cybc1	chr11	protein_coding	cytochrome b 245 chaperone 1
known_NIR_2619	chr11	121181716	121186855	+	121181716	121187049	A3SS	ENSMUST00000153579.2	known	1.00	22	0	22	0	n	1.00	15	0	15	0	n	0.93	39	3	39	3	y	1.00	24	0	24	0	n	0.97	39	1	39	1	n	0.96	22	1	22	1	n	0.93	26	2	26	2	y	0.90	19	2	19	2	y	1.00	11	0	11	0	n	1.00	28	0	28	0	n	1.00	11	0	11	0	n	1.00	19	0	19	0	n	ENSMUSG00000039275.10	Foxk2	chr11	protein_coding	forkhead box K2
known_NIR_2620	chr11	121187177	121187740	+	121187048	121187740	A5SS	ENSMUST00000106113.2	known	0.06	1	17	1	17	n	0.00	0	7	0	7	n	0.07	3	38	3	38	y	0.04	1	26	1	26	n	0.00	0	37	0	37	n	0.06	1	16	1	16	n	0.07	2	27	2	27	y	0.11	2	16	2	16	y	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	22	0	22	n	0.07	2	25	2	25	y	ENSMUSG00000039275.10	Foxk2	chr11	protein_coding	forkhead box K2
known_NIR_2621	chr11	121221954	121226210	-	121221058	121226210	A3SS	ENSMUST00000026173.13	known	0.00	0	78	0	78	n	0.04	3	69	3	69	y	0.01	1	117	1	117	n	0.00	0	100	0	100	n	0.00	0	151	0	151	n	0.00	0	47	0	47	n	0.00	0	153	0	153	n	0.03	2	76	2	76	y	0.04	3	72	3	72	y	0.01	1	124	1	124	n	0.03	2	65	2	65	y	0.00	0	124	0	124	n	ENSMUSG00000025173.14	Wdr45b	chr11	protein_coding	WD repeat domain 45B
known_NIR_2622	chr11	121226326	121227802	-	121226400	121227802	A3SS	ENSMUST00000026173.13	known	0.00	0	76	0	76	n	0.00	0	76	0	76	n	0.00	0	106	0	106	n	0.00	0	102	0	102	n	0.00	0	116	0	116	n	0.00	0	54	0	54	n	0.03	5	176	5	176	y	0.00	0	67	0	67	n	0.00	0	67	0	67	n	0.00	0	109	0	109	n	0.00	0	79	0	79	n	0.00	0	126	0	126	n	ENSMUSG00000025173.14	Wdr45b	chr11	protein_coding	WD repeat domain 45B
known_NIR_2623	chr11	121229470	121240058	-	121229470	121231940	5pMXE	ENSMUST00000137230.2	known	0.00	0	109	0	109	n	0.00	0	70	0	70	n	0.00	0	109	0	109	n	0.00	0	98	0	98	n	0.00	0	141	0	141	n	0.04	2	51	2	51	y	0.00	0	158	0	158	n	0.00	0	61	0	61	n	0.00	0	86	0	86	n	0.01	1	140	1	140	n	0.00	0	74	0	74	n	0.00	0	135	0	135	n	ENSMUSG00000025173.14	Wdr45b	chr11	protein_coding	WD repeat domain 45B
known_NIR_2624	chr11	121229470	121240058	-	121229470;121232041	121231940;121240058	ES	ENSMUST00000026173.13	known	0.00	0	91.5	0	109;74	n	0.00	0	69.5	0	70;69	n	0.00	0	102.5	0	109;96	n	0.00	0	90.5	0	98;83	n	0.00	0	134.0	0	141;127	n	0.04	2	48.0	2	51;45	y	0.00	0	137.0	0	158;116	n	0.00	0	55.5	0	61;50	n	0.00	0	69.0	0	86;52	n	0.01	1	122.5	1	140;105	n	0.00	0	60.5	0	74;47	n	0.00	0	133.0	0	135;131	n	ENSMUSG00000025173.14	Wdr45b	chr11	protein_coding	WD repeat domain 45B
known_NIR_2625	chr11	121394613;121409167	121408937;121431678	+	121394613	121431678	cassetteExon	ENSMUST00000103013.10	known	0.05	1.5	31	0;3	31	n	0.10	2.0	19	2;2	19	y	0.11	6.0	47	0;12	47	n	0.07	3.0	42	0;6	42	n	0.00	0.0	46	0;0	46	n	0.07	2.5	35	0;5	35	n	0.08	3.5	38	0;7	38	n	0.08	2.0	23	0;4	23	n	0.02	0.5	27	0;1	27	n	0.06	3.5	58	0;7	58	n	0.14	4.0	25	0;8	25	n	0.09	3.0	29	0;6	29	n	ENSMUSG00000039230.15	Tbcd	chr11	protein_coding	tubulin-specific chaperone d
known_NIR_2626	chr11	12206242	12259614	-	12206242;12217144	12216856;12259614	ES	ENSMUST00000109650.8	known	0.00	0	17.5	0	13;22	n	0.00	0	11.5	0	9;14	n	0.00	0	63.5	0	85;42	n	0.00	0	34.0	0	30;38	n	0.00	0	41.0	0	56;26	n	0.00	0	25.5	0	37;14	n	0.00	0	22.5	0	27;18	n	0.07	2	25.5	2	35;16	y	0.00	0	12.0	0	19;5	n	0.00	0	16.0	0	23;9	n	0.00	0	10.5	0	16;5	n	0.00	0	21.0	0	26;16	n	ENSMUSG00000020173.18	Cobl	chr11	protein_coding	cordon-bleu WH2 repeat
known_NIR_2627	chr11	12206242	12259614	-	12217144	12259614	3pMXE	ENSMUST00000172827.8	known	0.00	0	22	0	22	n	0.00	0	14	0	14	n	0.00	0	42	0	42	n	0.00	0	38	0	38	n	0.00	0	26	0	26	n	0.00	0	14	0	14	n	0.00	0	18	0	18	n	0.11	2	16	2	16	y	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	16	0	16	n	ENSMUSG00000020173.18	Cobl	chr11	protein_coding	cordon-bleu WH2 repeat
known_NIR_2628	chr11	12217144	12259614	-	12257128	12259614	3pMXE	ENSMUST00000130572.2	known	0.88	22	3	22	3	y	0.93	14	1	14	1	n	0.74	42	15	42	15	y	0.95	38	2	38	2	y	0.79	26	7	26	7	y	0.67	14	7	14	7	y	0.90	18	2	18	2	y	0.76	16	5	16	5	y	0.62	5	3	5	3	n	0.69	9	4	9	4	y	0.83	5	1	5	1	n	0.80	16	4	16	4	y	ENSMUSG00000020173.18	Cobl	chr11	protein_coding	cordon-bleu WH2 repeat
known_NIR_2629	chr11	12217144;12257128	12256958;12259614	-	12217144	12259614	cassetteExon	ENSMUST00000109650.8	known	0.15	4.0	22	5;3	22	y	0.15	2.5	14	4;1	14	n	0.30	18.0	42	21;15	42	y	0.13	5.5	38	9;2	38	y	0.31	11.5	26	16;7	26	y	0.36	8.0	14	9;7	14	y	0.31	8.0	18	14;2	18	y	0.26	5.5	16	6;5	16	y	0.57	6.5	5	10;3	5	y	0.31	4.0	9	4;4	9	y	0.29	2.0	5	3;1	5	n	0.29	6.5	16	9;4	16	y	ENSMUSG00000020173.18	Cobl	chr11	protein_coding	cordon-bleu WH2 repeat
known_NIR_2630	chr11	12293917	12319594	-	12293917;12315179	12315105;12319594	ES	ENSMUST00000172919.8	known	0.11	2	15.5	2	13;18	y	0.38	3	5.0	3	7;3	y	0.32	24	50.0	24	55;45	y	0.17	3	14.5	3	17;12	y	0.20	11	44.5	11	44;45	y	0.30	10	23.5	10	23;24	y	0.20	7	28.0	7	26;30	y	0.22	6	21.0	6	29;13	y	0.28	5	13.0	5	18;8	y	0.13	4	27.5	4	34;21	y	0.42	5	7.0	5	8;6	y	0.32	9	19.5	9	23;16	y	ENSMUSG00000020173.18	Cobl	chr11	protein_coding	cordon-bleu WH2 repeat
known_NIR_2631	chr11	12319691;12323373	12323329;12325810	-	12319691	12325810	cassetteExon	ENSMUST00000172919.8	known	0.00	0.0	18	0;0	18	n	0.00	0.0	9	0;0	9	n	0.00	0.0	79	0;0	79	n	0.00	0.0	23	0;0	23	n	0.00	0.0	36	0;0	36	n	0.00	0.0	34	0;0	34	n	0.10	4.0	36	4;4	36	y	0.00	0.0	33	0;0	33	n	0.00	0.0	23	0;0	23	n	0.00	0.0	16	0;0	16	n	0.00	0.0	12	0;0	12	n	0.00	0.0	18	0;0	18	n	ENSMUSG00000020173.18	Cobl	chr11	protein_coding	cordon-bleu WH2 repeat
known_NIR_2632	chr11	16456472	16457980	-	16456472	16458079	A5SS	ENSMUST00000178855.8	known	0.13	10	68	10	68	y	0.08	5	56	5	56	y	0.11	27	209	27	209	y	0.20	10	41	10	41	y	0.07	7	92	7	92	y	0.09	11	114	11	114	y	0.11	9	72	9	72	y	0.09	10	97	10	97	y	0.11	5	39	5	39	y	0.05	3	58	3	58	y	0.22	19	66	19	66	y	0.17	10	48	10	48	y	ENSMUSG00000078974.11	Sec61g	chr11	protein_coding	SEC61, gamma subunit
known_NIR_2633	chr11	16456472	16457980	-	16456472	16458100	A5SS	ENSMUST00000109642.8	known	0.36	10	18	10	18	y	0.18	5	23	5	23	y	0.41	27	39	27	39	y	0.45	10	12	10	12	y	0.19	7	29	7	29	y	0.34	11	21	11	21	y	0.27	9	24	9	24	y	0.34	10	19	10	19	y	0.28	5	13	5	13	y	0.12	3	21	3	21	y	0.51	19	18	19	18	y	0.43	10	13	10	13	y	ENSMUSG00000078974.11	Sec61g	chr11	protein_coding	SEC61, gamma subunit
known_NIR_2634	chr11	16456472	16457980	-	16456472	16458104	A5SS	ENSMUST00000109643.8	known	0.02	10	525	10	525	y	0.01	5	515	5	515	y	0.02	27	1132	27	1132	y	0.02	10	422	10	422	y	0.01	7	766	7	766	y	0.02	11	568	11	568	y	0.01	9	652	9	652	y	0.02	10	553	10	553	y	0.01	5	454	5	454	y	0.01	3	552	3	552	y	0.03	19	534	19	534	y	0.02	10	473	10	473	y	ENSMUSG00000078974.11	Sec61g	chr11	protein_coding	SEC61, gamma subunit
known_NIR_2635	chr11	16456472	16458079	-	16456472	16458100	A5SS	ENSMUST00000109642.8	known	0.79	68	18	68	18	y	0.71	56	23	56	23	y	0.84	209	39	209	39	y	0.77	41	12	41	12	y	0.76	92	29	92	29	y	0.84	114	21	114	21	y	0.75	72	24	72	24	y	0.84	97	19	97	19	y	0.75	39	13	39	13	y	0.73	58	21	58	21	y	0.79	66	18	66	18	y	0.79	48	13	48	13	y	ENSMUSG00000078974.11	Sec61g	chr11	protein_coding	SEC61, gamma subunit
known_NIR_2636	chr11	16456472	16458079	-	16456472	16458104	A5SS	ENSMUST00000109643.8	known	0.11	68	525	68	525	y	0.10	56	515	56	515	y	0.16	209	1132	209	1132	y	0.09	41	422	41	422	y	0.11	92	766	92	766	y	0.17	114	568	114	568	y	0.10	72	652	72	652	y	0.15	97	553	97	553	y	0.08	39	454	39	454	y	0.10	58	552	58	552	y	0.11	66	534	66	534	y	0.09	48	473	48	473	y	ENSMUSG00000078974.11	Sec61g	chr11	protein_coding	SEC61, gamma subunit
known_NIR_2637	chr11	16456472	16458100	-	16456472	16458104	A5SS	ENSMUST00000109643.8	known	0.03	18	525	18	525	y	0.04	23	515	23	515	y	0.03	39	1132	39	1132	y	0.03	12	422	12	422	y	0.04	29	766	29	766	y	0.04	21	568	21	568	y	0.04	24	652	24	652	y	0.03	19	553	19	553	y	0.03	13	454	13	454	y	0.04	21	552	21	552	y	0.03	18	534	18	534	y	0.03	13	473	13	473	y	ENSMUSG00000078974.11	Sec61g	chr11	protein_coding	SEC61, gamma subunit
known_NIR_2638	chr11	16702570	16743640	+	16702570	16808896	A3SS	ENSMUST00000102884.10	known	0.01	3	345	3	345	y	0.00	1	242	1	242	n	0.00	3	677	3	677	y	0.00	1	696	1	696	n	0.01	6	841	6	841	y	0.00	2	574	2	574	y	0.02	8	406	8	406	y	0.01	4	550	4	550	y	0.00	1	385	1	385	n	0.00	2	454	2	454	y	0.01	3	323	3	323	y	0.01	4	561	4	561	y	ENSMUSG00000020122.17	Egfr	chr11	protein_coding	epidermal growth factor receptor
known_NIR_2639	chr11	16833613	16834254	+	16833613	16837141	A3SS	ENSMUST00000102884.10	known	0.00	2	725	2	725	y	0.00	0	774	0	774	n	0.00	2	1092	2	1092	y	0.00	2	919	2	919	y	0.00	6	1312	6	1312	y	0.00	0	933	0	933	n	0.00	0	889	0	889	n	0.00	2	810	2	810	y	0.00	1	861	1	861	n	0.00	3	880	3	880	y	0.00	3	818	3	818	y	0.00	3	983	3	983	y	ENSMUSG00000020122.17	Egfr	chr11	protein_coding	epidermal growth factor receptor
known_NIR_2640	chr11	17208007	17212648	+	17207658	17212648	A5SS	ENSMUST00000131227.2	known	0.02	4	201	4	201	y	0.00	0	169	0	169	n	0.01	1	151	1	151	n	0.00	0	185	0	185	n	0.01	3	204	3	204	y	0.00	0	86	0	86	n	0.01	1	198	1	198	n	0.02	2	90	2	90	y	0.00	0	160	0	160	n	0.04	12	268	12	268	y	0.00	0	210	0	210	n	0.00	0	208	0	208	n	ENSMUSG00000000581.9	C1d	chr11	protein_coding	C1D nuclear receptor co-repressor
known_NIR_2641	chr11	17904085	17904793	+	17904085	17906633	A3SS	ENSMUST00000140161.2	known	0.88	7	1	7	1	n	0.36	4	7	4	7	y	0.50	3	3	3	3	n	0.47	8	9	8	9	y	0.69	9	4	9	4	y	1.00	3	0	3	0	n	0.75	6	2	6	2	n	0.00	0	3	0	3	n	0.69	11	5	11	5	y	0.72	18	7	18	7	y	0.53	10	9	10	9	y	1.00	3	0	3	0	n	ENSMUSG00000086468.2	Etaa1os	chr11	lncRNA	Ewing tumor-associated antigen 1, opposite strand
known_NIR_2642	chr11	18831922;18834082	18833988;18834387	-	18831922	18834387	cassetteExon	ENSMUST00000102878.11	known	1.00	1.5	0	0;3	0	n	0.75	3.0	1	1;5	1	n	1.00	3.5	0	3;4	0	n	1.00	5.0	0	3;7	0	n	0.65	5.5	3	2;9	3	y	1.00	1.0	0	1;1	0	n	1.00	2.0	0	3;1	0	n	0.60	1.5	1	3;0	1	n	1.00	6.5	0	8;5	0	n	0.62	6.5	4	7;6	4	y	1.00	5.0	0	3;7	0	n	1.00	8.5	0	11;6	0	n	ENSMUSG00000020160.19	Meis1	chr11	protein_coding	Meis homeobox 1
known_NIR_2643	chr11	20165702	20174367	+	20165702	20168813	3pMXE	ENSMUST00000132285.8	known	0.00	0	315	0	315	n	0.00	0	263	0	263	n	0.00	0	563	0	563	n	0.00	0	350	0	350	n	0.00	0	469	0	469	n	0.00	0	276	0	276	n	0.00	0	368	0	368	n	0.00	0	293	0	293	n	0.00	0	286	0	286	n	0.00	0	370	0	370	n	0.01	2	310	2	310	y	0.00	0	336	0	336	n	ENSMUSG00000020149.18	Rab1a	chr11	protein_coding	RAB1A, member RAS oncogene family
known_NIR_2644	chr11	20168908	20173084	+	20168908	20174648	A3SS	ENSMUST00000109601.8	known	1.00	420	0	420	0	n	1.00	319	0	319	0	n	1.00	722	0	722	0	n	1.00	459	0	459	0	n	1.00	611	0	611	0	n	1.00	365	0	365	0	n	1.00	465	0	465	0	n	0.99	358	2	358	2	y	1.00	357	0	357	0	n	1.00	478	0	478	0	n	1.00	366	0	366	0	n	1.00	421	0	421	0	n	ENSMUSG00000020149.18	Rab1a	chr11	protein_coding	RAB1A, member RAS oncogene family
known_NIR_2645	chr11	20173179	20174367	+	20165702	20174367	A5SS	ENSMUST00000109602.8	known	1.00	414	0	414	0	n	1.00	350	0	350	0	n	1.00	701	0	701	0	n	1.00	473	0	473	0	n	1.00	645	0	645	0	n	1.00	410	0	410	0	n	1.00	517	0	517	0	n	1.00	432	0	432	0	n	1.00	341	0	341	0	n	1.00	511	0	511	0	n	1.00	440	2	440	2	y	1.00	482	0	482	0	n	ENSMUSG00000020149.18	Rab1a	chr11	protein_coding	RAB1A, member RAS oncogene family
known_NIR_2646	chr11	20642588	20648313	-	20642588	20646751	A5SS	ENSMUST00000177014.8	known	0.95	52	3	52	3	y	0.95	56	3	56	3	y	0.96	100	4	100	4	y	1.00	58	0	58	0	n	0.96	90	4	90	4	y	1.00	45	0	45	0	n	0.96	68	3	68	3	y	0.89	40	5	40	5	y	1.00	51	0	51	0	n	1.00	94	0	94	0	n	0.99	71	1	71	1	n	1.00	75	0	75	0	n	ENSMUSG00000049659.16	Aftph	chr11	protein_coding	aftiphilin
known_NIR_2647	chr11	20642588	20648313	-	20642588;20646831	20646751;20648313	ES	ENSMUST00000146722.9	known	0.97	52	1.5	52	3;0	n	0.95	56	3.0	56	3;3	y	0.98	100	2.0	100	4;0	n	1.00	58	0.0	58	0;0	n	0.97	90	2.5	90	4;1	n	0.98	45	1.0	45	0;2	n	0.95	68	3.5	68	3;4	y	0.91	40	4.0	40	5;3	y	0.99	51	0.5	51	0;1	n	1.00	94	0.0	94	0;0	n	0.99	71	1.0	71	1;1	n	0.98	75	1.5	75	0;3	n	ENSMUSG00000049659.16	Aftph	chr11	protein_coding	aftiphilin
known_NIR_2648	chr11	21213354	21214630	+	21213354	21214666	A3SS	ENSMUST00000109578.8	known	0.50	14	14	14	14	y	0.47	9	10	9	10	y	0.33	17	34	17	34	y	0.61	22	14	22	14	y	0.51	35	34	35	34	y	0.40	16	24	16	24	y	0.65	30	16	30	16	y	0.42	14	19	14	19	y	0.67	18	9	18	9	y	0.45	19	23	19	23	y	0.49	19	20	19	20	y	0.46	26	31	26	31	y	ENSMUSG00000020128.16	Vps54	chr11	protein_coding	VPS54 GARP complex subunit
known_NIR_2649	chr11	21241159	21245341	+	21241159	21242024	3pMXE	ENSMUST00000132146.2	known	0.00	0	44	0	44	n	0.00	0	38	0	38	n	0.00	0	73	0	73	n	0.00	0	68	0	68	n	0.00	0	81	0	81	n	0.00	0	41	0	41	n	0.00	0	73	0	73	n	0.00	0	43	0	43	n	0.06	2	32	2	32	y	0.00	0	71	0	71	n	0.00	0	42	0	42	n	0.00	0	56	0	56	n	ENSMUSG00000020128.16	Vps54	chr11	protein_coding	VPS54 GARP complex subunit
known_NIR_2650	chr11	21241159	21245341	+	21241159;21242131	21242024;21245341	ES	ENSMUST00000109578.8	known	0.00	0	42.0	0	44;40	n	0.00	0	37.0	0	38;36	n	0.00	0	66.5	0	73;60	n	0.00	0	58.5	0	68;49	n	0.00	0	81.0	0	81;81	n	0.00	0	42.5	0	41;44	n	0.00	0	66.5	0	73;60	n	0.00	0	42.5	0	43;42	n	0.05	2	36.0	2	32;40	y	0.00	0	64.0	0	71;57	n	0.00	0	44.5	0	42;47	n	0.00	0	56.5	0	56;57	n	ENSMUSG00000020128.16	Vps54	chr11	protein_coding	VPS54 GARP complex subunit
known_NIR_2651	chr11	21304406	21321015	-	21304406	21320187	5pMXE	ENSMUST00000102875.11	known	0.23	39	133	39	133	y	0.34	45	89	45	89	y	0.35	54	100	54	100	y	0.33	96	191	96	191	y	0.31	90	205	90	205	y	0.38	41	67	41	67	y	0.24	71	223	71	223	y	0.25	31	94	31	94	y	0.24	67	218	67	218	y	0.27	98	270	98	270	y	0.32	72	154	72	154	y	0.23	103	343	103	343	y	ENSMUSG00000001891.17	Ugp2	chr11	protein_coding	UDP-glucose pyrophosphorylase 2
known_NIR_2652	chr11	22096700	22101067	-	22096625	22101067	A3SS	ENSMUST00000045167.11	known	0.20	2	8	2	8	y	0.33	1	2	1	2	n	0.33	1	2	1	2	n	0.33	2	4	2	4	n	0.24	4	13	4	13	y	0.57	4	3	4	3	n	0.20	2	8	2	8	y	0.60	3	2	3	2	n	0.44	4	5	4	5	n	0.50	9	9	9	9	y	0.00	0	4	0	4	n	0.75	3	1	3	1	n	ENSMUSG00000042302.15	Ehbp1	chr11	protein_coding	EH domain binding protein 1
known_NIR_2653	chr11	22850057	22932079	-	22850057	22906411	5pMXE	ENSMUST00000161944.2	known	0.05	10	194	10	194	y	0.01	2	203	2	203	y	0.01	3	200	3	200	y	0.03	6	210	6	210	y	0.02	5	232	5	232	y	0.01	1	108	1	108	n	0.03	9	255	9	255	y	0.01	1	118	1	118	n	0.02	3	195	3	195	y	0.03	8	273	8	273	y	0.02	5	206	5	206	y	0.02	5	264	5	264	y	ENSMUSG00000051355.19	Commd1	chr11	protein_coding	COMM domain containing 1
known_NIR_2654	chr11	22850057	22932079	-	22850057;22906692	22906411;22932079	ES	ENSMUST00000159081.8	known	0.05	10	181.0	10	194;168	y	0.01	2	186.5	2	203;170	y	0.02	3	169.0	3	200;138	y	0.03	6	185.0	6	210;160	y	0.02	5	204.5	5	232;177	y	0.01	1	105.5	1	108;103	n	0.04	9	230.0	9	255;205	y	0.01	1	102.0	1	118;86	n	0.02	3	162.0	3	195;129	y	0.03	8	268.0	8	273;263	y	0.02	5	205.0	5	206;204	y	0.02	5	251.5	5	264;239	y	ENSMUSG00000051355.19	Commd1	chr11	protein_coding	COMM domain containing 1
known_NIR_2655	chr11	22850057	22932079	-	22906692	22932079	A3SS&ES	ENSMUST00000160826.2	known	0.06	10	168	10	168	y	0.01	2	170	2	170	y	0.02	3	138	3	138	y	0.04	6	160	6	160	y	0.03	5	177	5	177	y	0.01	1	103	1	103	n	0.04	9	205	9	205	y	0.01	1	86	1	86	n	0.02	3	129	3	129	y	0.03	8	263	8	263	y	0.02	5	204	5	204	y	0.02	5	239	5	239	y	ENSMUSG00000098650.2	Commd1b	chr11	protein_coding	COMM domain containing 1B
known_NIR_2656	chr11	22906232	22906411	-	22850057	22906411	A3SS	ENSMUST00000159081.8	known	0.03	6	194	6	194	y	0.01	2	203	2	203	y	0.05	10	200	10	200	y	0.02	4	210	4	210	y	0.02	5	232	5	232	y	0.05	6	108	6	108	y	0.01	3	255	3	255	y	0.07	9	118	9	118	y	0.02	4	195	4	195	y	0.03	7	273	7	273	y	0.05	11	206	11	206	y	0.01	2	264	2	264	y	ENSMUSG00000051355.19	Commd1	chr11	protein_coding	COMM domain containing 1
known_NIR_2657	chr11	22906692	22922651	-	22906692	22932079	A5SS	ENSMUST00000160826.2	known	0.01	2	168	2	168	y	0.00	0	170	0	170	n	0.02	3	138	3	138	y	0.00	0	160	0	160	n	0.00	0	177	0	177	n	0.01	1	103	1	103	n	0.01	3	205	3	205	y	0.00	0	86	0	86	n	0.01	1	129	1	129	n	0.00	0	263	0	263	n	0.01	3	204	3	204	y	0.00	0	239	0	239	n	ENSMUSG00000098650.2	Commd1b	chr11	protein_coding	COMM domain containing 1B
known_NIR_2658	chr11	22906692	22923900	-	22906692	22932079	A5SS	ENSMUST00000160826.2	known	0.01	1	168	1	168	n	0.01	1	170	1	170	n	0.01	1	138	1	138	n	0.00	0	160	0	160	n	0.03	6	177	6	177	y	0.00	0	103	0	103	n	0.00	0	205	0	205	n	0.01	1	86	1	86	n	0.00	0	129	0	129	n	0.01	2	263	2	263	y	0.00	1	204	1	204	n	0.00	1	239	1	239	n	ENSMUSG00000098650.2	Commd1b	chr11	protein_coding	COMM domain containing 1B
known_NIR_2659	chr11	22971133;22971661	22971494;22973430	+	22971133	22973430	cassetteExon	ENSMUST00000172602.9	known	0.45	2.5	3	1;4	3	n	0.80	4.0	1	4;4	1	n	0.60	6.0	4	5;7	4	y	1.00	5.0	0	3;7	0	n	0.90	9.0	1	8;10	1	n	1.00	3.0	0	3;3	0	n	1.00	6.5	0	8;5	0	n	1.00	3.0	0	3;3	0	n	0.58	7.0	5	3;11	5	y	0.69	4.5	2	9;0	2	n	1.00	3.5	0	2;5	0	n	0.50	2.0	2	0;4	2	n	ENSMUSG00000049811.18	Fam161a	chr11	protein_coding	family with sequence similarity 161, member A
known_NIR_2660	chr11	23423054	23423170	+	23423054	23434102	A3SS	ENSMUST00000129368.3	known	1.00	34	0	34	0	n	0.96	43	2	43	2	y	0.93	56	4	56	4	y	1.00	40	0	40	0	n	0.94	48	3	48	3	y	0.93	28	2	28	2	y	0.98	54	1	54	1	n	1.00	33	0	33	0	n	1.00	32	0	32	0	n	0.94	49	3	49	3	y	1.00	26	0	26	0	n	0.98	40	1	40	1	n	ENSMUSG00000056342.17	Usp34	chr11	protein_coding	ubiquitin specific peptidase 34
known_NIR_2661	chr11	23424389	23434102	+	23423054	23434102	A5SS	ENSMUST00000129368.3	known	1.00	44	0	44	0	n	0.95	35	2	35	2	y	0.94	59	4	59	4	y	1.00	50	0	50	0	n	0.94	50	3	50	3	y	0.92	23	2	23	2	y	0.97	34	1	34	1	n	1.00	31	0	31	0	n	1.00	26	0	26	0	n	0.95	52	3	52	3	y	1.00	35	0	35	0	n	0.98	47	1	47	1	n	ENSMUSG00000056342.17	Usp34	chr11	protein_coding	ubiquitin specific peptidase 34
known_NIR_2662	chr11	23445064	23446766	-	23445064	23446691	A5SS	ENSMUST00000109539.8	known	0.00	0	200	0	200	n	0.00	0	115	0	115	n	0.00	0	119	0	119	n	0.00	0	190	0	190	n	0.00	0	225	0	225	n	0.09	5	49	5	49	y	0.01	3	201	3	201	y	0.01	1	66	1	66	n	0.02	3	146	3	146	y	0.00	0	185	0	185	n	0.03	5	144	5	144	y	0.01	2	187	2	187	y	ENSMUSG00000020288.14	Ahsa2	chr11	protein_coding	AHA1, activator of heat shock protein ATPase 2
known_NIR_2663	chr11	23446881	23447775	-	23446876	23447775	A3SS	ENSMUST00000109539.8	known	0.91	116	11	116	11	y	0.86	105	17	105	17	y	0.90	69	8	69	8	y	0.86	120	19	120	19	y	0.89	166	21	166	21	y	0.93	53	4	53	4	y	0.88	115	16	115	16	y	0.95	55	3	55	3	y	0.85	88	16	88	16	y	0.84	118	22	118	22	y	0.84	94	18	94	18	y	0.89	109	13	109	13	y	ENSMUSG00000020288.14	Ahsa2	chr11	protein_coding	AHA1, activator of heat shock protein ATPase 2
known_NIR_2664	chr11	23525517	23526731	-	23516195	23526731	A3SS	ENSMUST00000155903.8	known	1.00	19	0	19	0	n	0.88	14	2	14	2	y	0.97	28	1	28	1	n	0.83	20	4	20	4	y	0.88	23	3	23	3	y	1.00	13	0	13	0	n	1.00	23	0	23	0	n	1.00	13	0	13	0	n	1.00	26	0	26	0	n	1.00	39	0	39	0	n	1.00	16	0	16	0	n	0.96	26	1	26	1	n	ENSMUSG00000042208.16	0610010F05Rik	chr11	protein_coding	RIKEN cDNA 0610010F05 gene
known_NIR_2665	chr11	23572525	23574936	-	23572529	23574936	A3SS	ENSMUST00000155903.8	known	0.20	2	8	2	8	y	0.00	0	11	0	11	n	0.03	1	36	1	36	n	0.00	0	24	0	24	n	0.21	4	15	4	15	y	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.10	2	19	2	19	y	0.00	0	16	0	16	n	0.18	3	14	3	14	y	0.08	1	11	1	11	n	0.05	1	20	1	20	n	ENSMUSG00000042208.16	0610010F05Rik	chr11	protein_coding	RIKEN cDNA 0610010F05 gene
known_NIR_2666	chr11	23601055	23605436	-	23601055	23615747	A5SS	ENSMUST00000130811.2	known	1.00	181	0	181	0	n	0.99	151	1	151	1	n	1.00	258	0	258	0	n	0.99	197	2	197	2	y	1.00	242	0	242	0	n	1.00	136	0	136	0	n	1.00	260	0	260	0	n	1.00	135	0	135	0	n	1.00	155	0	155	0	n	1.00	248	1	248	1	n	1.00	177	0	177	0	n	1.00	222	0	222	0	n	ENSMUSG00000020283.6	Pex13	chr11	protein_coding	peroxisomal biogenesis factor 13
known_NIR_2667	chr11	23601055	23615747	-	23601055;23606130	23605436;23615747	ES	ENSMUST00000020523.4	known	0.00	0	112.0	0	181;43	n	0.01	1	86.0	1	151;21	n	0.00	0	160.0	0	258;62	n	0.02	2	125.5	2	197;54	y	0.00	0	158.5	0	242;75	n	0.00	0	86.5	0	136;37	n	0.00	0	157.0	0	260;54	n	0.00	0	85.5	0	135;36	n	0.00	0	98.0	0	155;41	n	0.01	1	150.0	1	248;52	n	0.00	0	107.5	0	177;38	n	0.00	0	135.0	0	222;48	n	ENSMUSG00000020283.6	Pex13	chr11	protein_coding	peroxisomal biogenesis factor 13
known_NIR_2668	chr11	23606130	23615747	-	23601055	23615747	A3SS	ENSMUST00000130811.2	known	1.00	43	0	43	0	n	0.95	21	1	21	1	n	1.00	62	0	62	0	n	0.96	54	2	54	2	y	1.00	75	0	75	0	n	1.00	37	0	37	0	n	1.00	54	0	54	0	n	1.00	36	0	36	0	n	1.00	41	0	41	0	n	0.98	52	1	52	1	n	1.00	38	0	38	0	n	1.00	48	0	48	0	n	ENSMUSG00000020283.6	Pex13	chr11	protein_coding	peroxisomal biogenesis factor 13
known_NIR_2669	chr11	23615748	23617278	+	23615748	23617288	A3SS	ENSMUST00000109525.8	known	1.00	9	0	9	0	n	0.88	7	1	7	1	n	1.00	11	0	11	0	n	1.00	8	0	8	0	n	0.71	12	5	12	5	y	0.75	6	2	6	2	n	1.00	10	0	10	0	n	0.75	9	3	9	3	y	1.00	7	0	7	0	n	1.00	8	0	8	0	n	0.92	11	1	11	1	n	0.90	9	1	9	1	n	ENSMUSG00000020280.13	Pus10	chr11	protein_coding	pseudouridylate synthase 10
known_NIR_2670	chr11	23616453	23617278	+	23615748	23617278	A5SS	ENSMUST00000020520.11	known	0.25	3	9	3	9	y	0.46	6	7	6	7	y	0.21	3	11	3	11	y	0.64	14	8	14	8	y	0.43	9	12	9	12	y	0.25	2	6	2	6	n	0.38	6	10	6	10	y	0.55	11	9	11	9	y	0.50	7	7	7	7	y	0.58	11	8	11	8	y	0.35	6	11	6	11	y	0.57	12	9	12	9	y	ENSMUSG00000020280.13	Pus10	chr11	protein_coding	pseudouridylate synthase 10
known_NIR_2671	chr11	23616453	23617288	+	23616453	23617278	A3SS	ENSMUST00000058163.11	known	0.40	2	3	2	3	n	0.14	1	6	1	6	n	0.25	1	3	1	3	n	0.22	4	14	4	14	y	0.18	2	9	2	9	y	0.60	3	2	3	2	n	0.50	6	6	6	6	y	0.08	1	11	1	11	n	0.12	1	7	1	7	n	0.27	4	11	4	11	y	0.00	0	6	0	6	n	0.25	4	12	4	12	y	ENSMUSG00000020280.13	Pus10	chr11	protein_coding	pseudouridylate synthase 10
known_NIR_2672	chr11	26384500	26418335	+	26384500;26409836	26409686;26418335	ES	ENSMUST00000004120.9	known	0.12	3	22.5	3	19;26	y	0.00	0	16.5	0	14;19	n	0.13	3	20.5	3	29;12	y	0.00	0	23.0	0	22;24	n	0.00	0	30.0	0	34;26	n	0.00	0	16.5	0	22;11	n	0.06	2	33.5	2	41;26	y	0.00	0	11.0	0	17;5	n	0.00	0	12.0	0	15;9	n	0.08	3	32.5	3	39;26	y	0.00	0	22.0	0	22;22	n	0.03	1	28.0	1	38;18	n	ENSMUSG00000004018.10	Fancl	chr11	protein_coding	Fanconi anemia, complementation group L
known_NIR_2673	chr11	26419768	26420807	+	26419768	26420877	A3SS	ENSMUST00000004120.9	known	0.00	0	18	0	18	n	0.00	0	29	0	29	n	0.00	0	25	0	25	n	0.00	0	33	0	33	n	0.07	2	26	2	26	y	0.00	0	13	0	13	n	0.00	0	24	0	24	n	0.00	0	14	0	14	n	0.12	2	15	2	15	y	0.00	0	33	0	33	n	0.00	0	30	0	30	n	0.00	0	33	0	33	n	ENSMUSG00000004018.10	Fancl	chr11	protein_coding	Fanconi anemia, complementation group L
known_NIR_2674	chr11	29082905	29083856	+	29082905	29083852	A3SS	ENSMUST00000154924.8	known	0.00	0	15	0	15	n	0.00	0	11	0	11	n	0.06	2	32	2	32	y	0.00	0	36	0	36	n	0.07	2	28	2	28	y	0.00	0	22	0	22	n	0.00	0	19	0	19	n	0.00	0	15	0	15	n	0.05	1	19	1	19	n	0.00	0	36	0	36	n	0.04	1	24	1	24	n	0.00	0	24	0	24	n	ENSMUSG00000020464.16	Pnpt1	chr11	protein_coding	polyribonucleotide nucleotidyltransferase 1
known_NIR_2675	chr11	29463676	29464917	-	29463676;29464522	29464432;29464917	ES	ENSMUST00000133103.2	known	0.64	51	28.5	51	32;25	y	0.71	68	28.0	68	33;23	y	0.69	80	36.5	80	45;28	y	0.77	86	25.5	86	33;18	y	0.68	88	42.0	88	48;36	y	0.61	33	21.0	33	23;19	y	0.72	77	30.0	77	36;24	y	0.72	64	25.5	64	32;19	y	0.76	62	20.0	62	23;17	y	0.68	77	36.0	77	48;24	y	0.70	75	31.5	75	43;20	y	0.75	86	29.0	86	39;19	y	ENSMUSG00000032673.6	Prorsd1	chr11	protein_coding	prolyl-tRNA synthetase domain containing 1
known_NIR_2676	chr11	29476487	29479929	+	29476487;29476843	29476693;29479929	ES	ENSMUST00000133452.8	known	0.36	6	10.5	6	0;21	n	0.38	6	10.0	6	0;20	n	0.32	6	13.0	6	0;26	n	0.17	3	14.5	3	1;28	n	0.16	5	27.0	5	0;54	n	0.33	5	10.0	5	4;16	y	0.24	5	15.5	5	0;31	n	0.44	8	10.0	8	0;20	n	0.17	4	20.0	4	2;38	y	0.26	8	23.0	8	3;43	y	0.22	4	14.5	4	0;29	n	0.24	7	22.0	7	0;44	n	ENSMUSG00000020459.15	Mtif2	chr11	protein_coding	mitochondrial translational initiation factor 2
known_NIR_2677	chr11	29476487	29479929	+	29476565	29479929	A5SS	ENSMUST00000136351.8	known	0.86	6	1	6	1	n	1.00	6	0	6	0	n	1.00	6	0	6	0	n	1.00	3	0	3	0	n	0.62	5	3	5	3	n	0.83	5	1	5	1	n	1.00	5	0	5	0	n	0.62	8	5	8	5	y	0.57	4	3	4	3	n	0.73	8	3	8	3	y	0.67	4	2	4	2	n	0.78	7	2	7	2	n	ENSMUSG00000020459.15	Mtif2	chr11	protein_coding	mitochondrial translational initiation factor 2
known_NIR_2678	chr11	29476487	29479929	+	29476843	29479929	A5SS	ENSMUST00000156352.2	known	0.22	6	21	6	21	y	0.23	6	20	6	20	y	0.19	6	26	6	26	y	0.10	3	28	3	28	y	0.08	5	54	5	54	y	0.24	5	16	5	16	y	0.14	5	31	5	31	y	0.29	8	20	8	20	y	0.10	4	38	4	38	y	0.16	8	43	8	43	y	0.12	4	29	4	29	y	0.14	7	44	7	44	y	ENSMUSG00000020459.15	Mtif2	chr11	protein_coding	mitochondrial translational initiation factor 2
known_NIR_2679	chr11	29476565	29479929	+	29476843	29479929	A5SS&ES	ENSMUST00000133452.8	known	0.05	1	21	1	21	n	0.00	0	20	0	20	n	0.00	0	26	0	26	n	0.00	0	28	0	28	n	0.05	3	54	3	54	y	0.06	1	16	1	16	n	0.00	0	31	0	31	n	0.20	5	20	5	20	y	0.07	3	38	3	38	y	0.07	3	43	3	43	y	0.06	2	29	2	29	y	0.04	2	44	2	44	y	ENSMUSG00000020459.15	Mtif2	chr11	protein_coding	mitochondrial translational initiation factor 2
known_NIR_2680	chr11	29483992	29486833	+	29483992;29485266	29485090;29486833	ES	ENSMUST00000020749.13	known	0.00	0	39.5	0	32;47	n	0.00	0	36.5	0	29;44	n	0.00	0	65.0	0	61;69	n	0.00	0	66.0	0	49;83	n	0.00	0	72.0	0	57;87	n	0.00	0	39.0	0	33;45	n	0.00	0	66.0	0	47;85	n	0.00	0	59.0	0	52;66	n	0.00	0	53.5	0	54;53	n	0.01	1	77.0	1	72;82	n	0.04	2	46.5	2	41;52	y	0.00	0	87.0	0	79;95	n	ENSMUSG00000020459.15	Mtif2	chr11	protein_coding	mitochondrial translational initiation factor 2
known_NIR_2681	chr11	29643693	29683633	+	29643693;29655591	29655535;29683633	ES	ENSMUST00000102842.10	known	0.86	9	1.5	9	3;0	n	0.91	20	2.0	20	2;2	y	0.85	30	5.5	30	5;6	y	0.77	10	3.0	10	4;2	y	0.88	32	4.5	32	5;4	y	0.94	15	1.0	15	1;1	n	0.86	15	2.5	15	4;1	n	0.87	10	1.5	10	1;2	n	0.86	3	0.5	3	0;1	n	0.82	20	4.5	20	4;5	y	0.94	17	1.0	17	1;1	n	0.92	40	3.5	40	5;2	y	ENSMUSG00000020458.17	Rtn4	chr11	protein_coding	reticulon 4
known_NIR_2682	chr11	29655591	29683633	+	29655591;29658770	29656410;29683633	ES	ENSMUST00000102843.10	known	0.00	0	3.0	0	3;3	n	0.67	2	1.0	2	0;2	n	0.55	6	5.0	6	3;7	y	0.50	2	2.0	2	2;2	n	0.67	4	2.0	4	0;4	n	0.29	1	2.5	1	0;5	n	0.13	1	6.5	1	4;9	n	0.67	2	1.0	2	0;2	n	0.50	1	1.0	1	1;1	n	0.56	5	4.0	5	1;7	n	0.25	1	3.0	1	1;5	n	0.25	2	6.0	2	4;8	y	ENSMUSG00000020458.17	Rtn4	chr11	protein_coding	reticulon 4
known_NIR_2683	chr11	29658770	29683633	+	29643693	29683633	A5SS	ENSMUST00000078830.11	known	0.25	3	9	3	9	y	0.09	2	20	2	20	y	0.19	7	30	7	30	y	0.17	2	10	2	10	y	0.11	4	32	4	32	y	0.25	5	15	5	15	y	0.38	9	15	9	15	y	0.17	2	10	2	10	y	0.25	1	3	1	3	n	0.26	7	20	7	20	y	0.23	5	17	5	17	y	0.17	8	40	8	40	y	ENSMUSG00000020458.17	Rtn4	chr11	protein_coding	reticulon 4
known_NIR_2684	chr11	29658770	29683633	+	29655591	29683633	A5SS	ENSMUST00000102842.10	known	1.00	3	0	3	0	n	0.50	2	2	2	2	n	0.54	7	6	7	6	y	0.50	2	2	2	2	n	0.50	4	4	4	4	n	0.83	5	1	5	1	n	0.90	9	1	9	1	n	0.50	2	2	2	2	n	0.50	1	1	1	1	n	0.58	7	5	7	5	y	0.83	5	1	5	1	n	0.80	8	2	8	2	y	ENSMUSG00000020458.17	Rtn4	chr11	protein_coding	reticulon 4
known_NIR_2685	chr11	29668882	29683633	+	29643693	29683633	A5SS	ENSMUST00000078830.11	known	0.92	99	9	99	9	y	0.83	97	20	97	20	y	0.76	93	30	93	30	y	0.93	135	10	135	10	y	0.84	165	32	165	32	y	0.77	49	15	49	15	y	0.94	237	15	237	15	y	0.90	89	10	89	10	y	0.97	96	3	96	3	y	0.91	207	20	207	20	y	0.83	84	17	84	17	y	0.72	104	40	104	40	y	ENSMUSG00000020458.17	Rtn4	chr11	protein_coding	reticulon 4
known_NIR_2686	chr11	29668882	29683633	+	29655591	29683633	A5SS	ENSMUST00000102842.10	known	1.00	99	0	99	0	n	0.98	97	2	97	2	y	0.94	93	6	93	6	y	0.99	135	2	135	2	y	0.98	165	4	165	4	y	0.98	49	1	49	1	n	1.00	237	1	237	1	n	0.98	89	2	89	2	y	0.99	96	1	96	1	n	0.98	207	5	207	5	y	0.99	84	1	84	1	n	0.98	104	2	104	2	y	ENSMUSG00000020458.17	Rtn4	chr11	protein_coding	reticulon 4
known_NIR_2687	chr11	29668882	29683633	+	29658770	29683633	A5SS	ENSMUST00000102843.10	known	0.97	99	3	99	3	y	0.98	97	2	97	2	y	0.93	93	7	93	7	y	0.99	135	2	135	2	y	0.98	165	4	165	4	y	0.91	49	5	49	5	y	0.96	237	9	237	9	y	0.98	89	2	89	2	y	0.99	96	1	96	1	n	0.97	207	7	207	7	y	0.94	84	5	84	5	y	0.93	104	8	104	8	y	ENSMUSG00000020458.17	Rtn4	chr11	protein_coding	reticulon 4
known_NIR_2688	chr11	30109445	30147724	-	30109445	30169579	A5SS	ENSMUST00000006629.14	known	0.50	3	3	3	3	n	0.75	6	2	6	2	n	0.70	19	8	19	8	y	0.91	10	1	10	1	n	0.77	17	5	17	5	y	0.75	12	4	12	4	y	0.50	10	10	10	10	y	0.75	9	3	9	3	y	0.75	6	2	6	2	n	0.62	10	6	10	6	y	0.33	1	2	1	2	n	0.59	10	7	10	7	y	ENSMUSG00000020315.19	Sptbn1	chr11	protein_coding	spectrin beta, non-erythrocytic 1
known_NIR_2689	chr11	3076058;3077219	3077131;3077479	+	3076058	3077479	cassetteExon	ENSMUST00000145164.8	known	0.09	4.0	41	3;5	41	y	0.09	3.5	34	2;5	34	y	0.04	4.5	109	3;6	109	y	0.00	0.0	32	0;0	32	n	0.19	9.5	41	12;7	41	y	0.04	2.0	45	1;3	45	n	0.07	2.5	32	0;5	32	n	0.03	1.0	35	0;2	35	n	0.15	4.5	26	5;4	26	y	0.23	7.0	24	2;12	24	y	0.15	3.5	20	0;7	20	n	0.11	4.0	32	4;4	32	y	ENSMUSG00000082286.12	Pisd-ps1	chr11	transcribed_unprocessed_pseudogene	phosphatidylserine decarboxylase, pseudogene 1
known_NIR_2690	chr11	30806115	30806889	+	30806115	30811348	A3SS	ENSMUST00000041231.14	known	0.03	5	154	5	154	y	0.04	6	130	6	130	y	0.03	6	211	6	211	y	0.03	5	155	5	155	y	0.05	11	217	11	217	y	0.03	4	125	4	125	y	0.02	4	247	4	247	y	0.06	6	88	6	88	y	0.04	5	130	5	130	y	0.03	7	199	7	199	y	0.04	7	182	7	182	y	0.03	6	198	6	198	y	ENSMUSG00000040850.18	Psme4	chr11	protein_coding	proteasome (prosome, macropain) activator subunit 4
known_NIR_2691	chr11	30885059;30885445	30885368;30889497	-	30885059	30889497	cassetteExon	ENSMUST00000073192.14	known	0.05	8.0	140	6;10	140	y	0.05	8.0	163	5;11	163	y	0.04	10.0	252	9;11	252	y	0.03	4.5	128	3;6	128	y	0.02	7.0	275	8;6	275	y	0.04	5.0	131	4;6	131	y	0.01	3.5	235	1;6	235	n	0.02	3.0	141	2;4	141	y	0.04	6.5	144	9;4	144	y	0.05	9.0	190	7;11	190	y	0.04	6.5	169	7;6	169	y	0.01	2.5	238	2;3	238	y	ENSMUSG00000020311.18	Erlec1	chr11	protein_coding	endoplasmic reticulum lectin 1
known_NIR_2692	chr11	30885059;30885445	30885368;30893039	-	30885059;30889621	30889497;30893039	MXE	ENSMUST00000073192.14	known	0.02	3.0	137.5	6;0	140;135	n	0.02	3.5	142.0	5;2	163;121	y	0.02	5.0	245.5	9;1	252;239	n	0.01	1.5	124.5	3;0	128;121	n	0.02	4.0	255.5	8;0	275;236	n	0.02	3.0	134.0	4;2	131;137	y	0.00	0.5	216.0	1;0	235;197	n	0.01	2.0	136.5	2;2	141;132	y	0.03	4.5	130.5	9;0	144;117	n	0.02	3.5	188.5	7;0	190;187	n	0.02	3.5	156.5	7;0	169;144	n	0.01	1.0	199.0	2;0	238;160	n	ENSMUSG00000020311.18	Erlec1	chr11	protein_coding	endoplasmic reticulum lectin 1
known_NIR_2693	chr11	30885445	30893039	-	30885445;30889621	30889497;30893039	ES	ENSMUST00000129593.9	known	0.00	0	72.5	0	10;135	n	0.03	2	66.0	2	11;121	y	0.01	1	125.0	1	11;239	n	0.00	0	63.5	0	6;121	n	0.00	0	121.0	0	6;236	n	0.03	2	71.5	2	6;137	y	0.00	0	101.5	0	6;197	n	0.03	2	68.0	2	4;132	y	0.00	0	60.5	0	4;117	n	0.00	0	99.0	0	11;187	n	0.00	0	75.0	0	6;144	n	0.00	0	81.5	0	3;160	n	ENSMUSG00000020311.18	Erlec1	chr11	protein_coding	endoplasmic reticulum lectin 1
known_NIR_2694	chr11	30903116	30903914	-	30902676	30903914	A3SS	ENSMUST00000073192.14	known	0.00	0	47	0	47	n	0.00	0	33	0	33	n	0.02	2	93	2	93	y	0.00	0	58	0	58	n	0.01	1	108	1	108	n	0.00	0	61	0	61	n	0.00	0	113	0	113	n	0.00	0	69	0	69	n	0.00	0	56	0	56	n	0.00	0	74	0	74	n	0.00	0	37	0	37	n	0.01	1	75	1	75	n	ENSMUSG00000020311.18	Erlec1	chr11	protein_coding	endoplasmic reticulum lectin 1
known_NIR_2695	chr11	30927746	30936112	-	30927746;30929600	30929565;30936112	ES	ENSMUST00000101394.5	known	0.05	4	75.0	4	78;72	y	0.06	4	63.0	4	75;51	y	0.00	0	41.0	0	42;40	n	0.07	8	107.0	8	110;104	y	0.05	7	130.5	7	131;130	y	0.06	2	33.5	2	35;32	y	0.10	13	111.5	13	114;109	y	0.08	4	46.0	4	53;39	y	0.04	4	100.5	4	99;102	y	0.10	13	123.0	13	116;130	y	0.12	11	78.0	11	83;73	y	0.08	11	124.0	11	122;126	y	ENSMUSG00000020309.7	Chac2	chr11	protein_coding	ChaC, cation transport regulator 2
known_NIR_2696	chr11	3093336	3094217	-	3093336;3093790	3093695;3094217	ES	ENSMUST00000101655.10	known	1.00	21	0.0	21	0;0	n	0.96	23	1.0	23	0;2	n	0.87	23	3.5	23	4;3	y	0.83	19	4.0	19	6;2	y	0.89	24	3.0	24	1;5	n	0.90	13	1.5	13	1;2	n	0.94	22	1.5	22	0;3	n	0.93	19	1.5	19	0;3	n	0.97	19	0.5	19	1;0	n	0.95	21	1.0	21	0;2	n	0.84	19	3.5	19	4;3	y	0.88	18	2.5	18	2;3	y	ENSMUSG00000023764.19	Sfi1	chr11	protein_coding	Sfi1 homolog, spindle assembly associated (yeast)
known_NIR_2697	chr11	3094970	3096162	-	3094970;3095322	3095241;3096162	ES	ENSMUST00000101655.10	known	0.00	0	24.5	0	27;22	n	0.00	0	22.5	0	26;19	n	0.11	2	17.0	2	24;10	y	0.00	0	27.5	0	31;24	n	0.00	0	40.0	0	42;38	n	0.00	0	16.5	0	17;16	n	0.00	0	19.0	0	12;26	n	0.00	0	14.5	0	19;10	n	0.00	0	14.5	0	12;17	n	0.00	0	20.5	0	18;23	n	0.00	0	30.5	0	35;26	n	0.00	0	19.0	0	24;14	n	ENSMUSG00000023764.19	Sfi1	chr11	protein_coding	Sfi1 homolog, spindle assembly associated (yeast)
known_NIR_2698	chr11	3103498	3105399	-	3103498	3114557	A5SS	ENSMUST00000138126.8	known	0.96	23	1	23	1	n	1.00	21	0	21	0	n	1.00	18	0	18	0	n	1.00	15	0	15	0	n	0.90	18	2	18	2	y	1.00	9	0	9	0	n	1.00	29	0	29	0	n	1.00	8	0	8	0	n	1.00	5	0	5	0	n	0.94	16	1	16	1	n	1.00	13	0	13	0	n	0.88	23	3	23	3	y	ENSMUSG00000023764.19	Sfi1	chr11	protein_coding	Sfi1 homolog, spindle assembly associated (yeast)
known_NIR_2699	chr11	3110146	3114557	-	3103498	3114557	A3SS	ENSMUST00000138126.8	known	0.92	12	1	12	1	n	1.00	22	0	22	0	n	-	-	-	-	-	-	1.00	10	0	10	0	n	0.89	17	2	17	2	y	1.00	13	0	13	0	n	1.00	18	0	18	0	n	1.00	2	0	2	0	n	1.00	9	0	9	0	n	0.92	11	1	11	1	n	1.00	11	0	11	0	n	0.77	10	3	10	3	y	ENSMUSG00000023764.19	Sfi1	chr11	protein_coding	Sfi1 homolog, spindle assembly associated (yeast)
known_NIR_2700	chr11	3114713	3120587	-	3114713;3115678	3115576;3120587	ES	ENSMUST00000101655.10	known	0.00	0	16.5	0	22;11	n	0.00	0	12.0	0	13;11	n	0.00	0	6.5	0	3;10	n	0.05	1	18.5	1	19;18	n	0.10	2	19.0	2	19;19	y	0.00	0	9.0	0	9;9	n	0.00	0	12.5	0	15;10	n	0.00	0	8.5	0	8;9	n	0.00	0	11.5	0	11;12	n	0.00	0	12.5	0	16;9	n	0.00	0	11.0	0	13;9	n	0.00	0	17.5	0	19;16	n	ENSMUSG00000023764.19	Sfi1	chr11	protein_coding	Sfi1 homolog, spindle assembly associated (yeast)
known_NIR_2701	chr11	3114713	3120587	-	3115678	3120587	A3SS&ES	ENSMUST00000156655.8	known	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.05	1	18	1	18	n	0.10	2	19	2	19	y	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	16	0	16	n	ENSMUSG00000023764.19	Sfi1	chr11	protein_coding	Sfi1 homolog, spindle assembly associated (yeast)
known_NIR_2702	chr11	3115321	3115576	-	3114713	3115576	A3SS	ENSMUST00000132893.8	known	0.00	0	22	0	22	n	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.00	0	19	0	19	n	0.10	2	19	2	19	y	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.00	0	19	0	19	n	ENSMUSG00000023764.19	Sfi1	chr11	protein_coding	Sfi1 homolog, spindle assembly associated (yeast)
known_NIR_2703	chr11	3135974	3136065	-	3129507	3136065	A3SS	ENSMUST00000101655.10	known	0.00	0	15	0	15	n	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.00	0	20	0	20	n	0.00	0	20	0	20	n	0.00	0	10	0	10	n	0.00	0	17	0	17	n	0.12	1	7	1	7	n	0.00	0	12	0	12	n	0.00	0	23	0	23	n	0.14	2	12	2	12	y	0.00	0	36	0	36	n	ENSMUSG00000023764.19	Sfi1	chr11	protein_coding	Sfi1 homolog, spindle assembly associated (yeast)
known_NIR_2704	chr11	3137410	3138878	-	3137410	3138941	A5SS	ENSMUST00000101655.10	known	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	16	0	16	n	0.13	2	13	2	13	y	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	ENSMUSG00000023764.19	Sfi1	chr11	protein_coding	Sfi1 homolog, spindle assembly associated (yeast)
known_NIR_2705	chr11	3152992	3153630	+	3152556	3153630	A5SS	ENSMUST00000020734.11	known	0.80	4	1	4	1	n	1.00	5	0	5	0	n	0.87	13	2	13	2	y	0.87	13	2	13	2	y	1.00	15	0	15	0	n	1.00	1	0	1	0	n	1.00	9	0	9	0	n	1.00	5	0	5	0	n	1.00	4	0	4	0	n	0.88	7	1	7	1	n	1.00	7	0	7	0	n	1.00	6	0	6	0	n	ENSMUSG00000020454.18	Eif4enif1	chr11	protein_coding	eukaryotic translation initiation factor 4E nuclear import factor 1
known_NIR_2706	chr11	3152992	3153630	+	3152797	3153630	A5SS	ENSMUST00000125224.8	known	0.80	4	1	4	1	n	0.56	5	4	5	4	n	0.65	13	7	13	7	y	0.93	13	1	13	1	n	0.52	15	14	15	14	y	0.12	1	7	1	7	n	0.82	9	2	9	2	y	0.71	5	2	5	2	n	1.00	4	0	4	0	n	0.50	7	7	7	7	y	0.88	7	1	7	1	n	0.67	6	3	6	3	n	ENSMUSG00000020454.18	Eif4enif1	chr11	protein_coding	eukaryotic translation initiation factor 4E nuclear import factor 1
known_NIR_2707	chr11	3153326	3153630	+	3152797	3153630	A5SS	ENSMUST00000125224.8	known	0.75	3	1	3	1	n	0.20	1	4	1	4	n	0.22	2	7	2	7	n	0.67	2	1	2	1	n	0.22	4	14	4	14	y	0.30	3	7	3	7	y	0.71	5	2	5	2	n	0.50	2	2	2	2	n	-	-	-	-	-	-	0.22	2	7	2	7	n	0.50	1	1	1	1	n	0.25	1	3	1	3	n	ENSMUSG00000020454.18	Eif4enif1	chr11	protein_coding	eukaryotic translation initiation factor 4E nuclear import factor 1
known_NIR_2708	chr11	3153326	3153630	+	3152992	3153630	A5SS	ENSMUST00000125637.8	known	0.43	3	4	3	4	n	0.17	1	5	1	5	n	0.13	2	13	2	13	y	0.13	2	13	2	13	y	0.21	4	15	4	15	y	0.75	3	1	3	1	n	0.36	5	9	5	9	y	0.29	2	5	2	5	n	0.00	0	4	0	4	n	0.22	2	7	2	7	n	0.12	1	7	1	7	n	0.14	1	6	1	6	n	ENSMUSG00000020454.18	Eif4enif1	chr11	protein_coding	eukaryotic translation initiation factor 4E nuclear import factor 1
known_NIR_2709	chr11	3177885	3179968	+	3177885	3179869	A3SS	ENSMUST00000020734.11	known	0.02	1	41	1	41	n	0.06	2	30	2	30	y	0.03	2	75	2	75	y	0.07	3	43	3	43	y	0.07	3	41	3	41	y	0.04	1	22	1	22	n	0.02	1	50	1	50	n	0.00	0	43	0	43	n	0.06	2	31	2	31	y	0.06	2	34	2	34	y	0.03	1	31	1	31	n	0.10	4	38	4	38	y	ENSMUSG00000020454.18	Eif4enif1	chr11	protein_coding	eukaryotic translation initiation factor 4E nuclear import factor 1
known_NIR_2710	chr11	3180101	3184462	+	3180101	3183988	A3SS&ES	ENSMUST00000135223.2	known	0.43	10	13	10	13	y	0.30	7	16	7	16	y	0.51	24	23	24	23	y	0.26	7	20	7	20	y	0.26	13	37	13	37	y	0.38	11	18	11	18	y	0.43	20	27	20	27	y	0.19	7	29	7	29	y	0.40	10	15	10	15	y	0.30	10	23	10	23	y	0.35	9	17	9	17	y	0.30	11	26	11	26	y	ENSMUSG00000020454.18	Eif4enif1	chr11	protein_coding	eukaryotic translation initiation factor 4E nuclear import factor 1
known_NIR_2711	chr11	3180101	3184462	+	3184059	3184462	A5SS&ES	ENSMUST00000120721.9	known	0.48	10	11	10	11	y	0.28	7	18	7	18	y	0.56	24	19	24	19	y	0.35	7	13	7	13	y	0.30	13	30	13	30	y	0.55	11	9	11	9	y	0.53	20	18	20	18	y	0.33	7	14	7	14	y	0.45	10	12	10	12	y	0.32	10	21	10	21	y	0.50	9	9	9	9	y	0.38	11	18	11	18	y	ENSMUSG00000020454.18	Eif4enif1	chr11	protein_coding	eukaryotic translation initiation factor 4E nuclear import factor 1
known_NIR_2712	chr11	3180101;3184059	3183988;3184462	+	3180101	3184462	cassetteExon	ENSMUST00000020734.11	known	0.55	12.0	10	13;11	10	y	0.71	17.0	7	16;18	7	y	0.47	21.0	24	23;19	24	y	0.70	16.5	7	20;13	7	y	0.72	33.5	13	37;30	13	y	0.55	13.5	11	18;9	11	y	0.53	22.5	20	27;18	20	y	0.75	21.5	7	29;14	7	y	0.57	13.5	10	15;12	10	y	0.69	22.0	10	23;21	10	y	0.59	13.0	9	17;9	9	y	0.67	22.0	11	26;18	11	y	ENSMUSG00000020454.18	Eif4enif1	chr11	protein_coding	eukaryotic translation initiation factor 4E nuclear import factor 1
known_NIR_2713	chr11	3184059	3184585	+	3184059	3184462	A3SS	ENSMUST00000110049.8	known	0.00	0	11	0	11	n	0.10	2	18	2	18	y	0.00	0	19	0	19	n	0.00	0	13	0	13	n	0.09	3	30	3	30	y	0.00	0	9	0	9	n	0.14	3	18	3	18	y	0.12	2	14	2	14	y	0.00	0	12	0	12	n	0.00	0	21	0	21	n	0.00	0	9	0	9	n	0.10	2	18	2	18	y	ENSMUSG00000020454.18	Eif4enif1	chr11	protein_coding	eukaryotic translation initiation factor 4E nuclear import factor 1
known_NIR_2714	chr11	32164483	32164910	-	32164602	32164910	A3SS	ENSMUST00000020524.15	known	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.15	2	11	2	11	y	0.00	0	6	0	6	n	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.22	2	7	2	7	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	ENSMUSG00000020282.19	Rhbdf1	chr11	protein_coding	rhomboid 5 homolog 1
known_NIR_2715	chr11	32166347	32172169	-	32166282	32172169	A3SS	ENSMUST00000020524.15	known	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.18	2	9	2	9	y	0.29	2	5	2	5	n	0.12	1	7	1	7	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.12	1	7	1	7	n	ENSMUSG00000020282.19	Rhbdf1	chr11	protein_coding	rhomboid 5 homolog 1
known_NIR_2716	chr11	32177949	32179849	+	32177949	32179247	A3SS&ES	ENSMUST00000142964.8	known	0.94	31	2	31	2	y	0.88	21	3	21	3	y	0.93	51	4	51	4	y	0.93	28	2	28	2	y	0.84	41	8	41	8	y	0.84	26	5	26	5	y	0.82	27	6	27	6	y	0.85	17	3	17	3	y	0.75	18	6	18	6	y	0.89	34	4	34	4	y	0.97	29	1	29	1	n	0.87	34	5	34	5	y	ENSMUSG00000020287.16	Mpg	chr11	protein_coding	N-methylpurine-DNA glycosylase
known_NIR_2717	chr11	32177949;32179616	32179247;32179849	+	32177949	32179849	cassetteExon	ENSMUST00000020528.14	known	0.09	3.0	31	2;4	31	y	0.14	3.5	21	3;4	21	y	0.07	4.0	51	4;4	51	y	0.03	1.0	28	2;0	28	n	0.10	4.5	41	8;1	41	n	0.09	2.5	26	5;0	26	n	0.16	5.0	27	6;4	27	y	0.13	2.5	17	3;2	17	y	0.22	5.0	18	6;4	18	y	0.14	5.5	34	4;7	34	y	0.13	4.5	29	1;8	29	n	0.13	5.0	34	5;5	34	y	ENSMUSG00000020287.16	Mpg	chr11	protein_coding	N-methylpurine-DNA glycosylase
known_NIR_2718	chr11	32179616	32179849	+	32179616	32179880	A3SS	ENSMUST00000142964.8	known	1.00	4	0	4	0	n	1.00	4	0	4	0	n	1.00	4	0	4	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.57	4	3	4	3	n	1.00	2	0	2	0	n	1.00	4	0	4	0	n	0.58	7	5	7	5	y	1.00	8	0	8	0	n	1.00	5	0	5	0	n	ENSMUSG00000020287.16	Mpg	chr11	protein_coding	N-methylpurine-DNA glycosylase
known_NIR_2719	chr11	32187406;32189290	32188989;32189797	-	32187406	32189797	cassetteExon	ENSMUST00000124640.8	known	0.00	0.0	23	0;0	23	n	0.00	0.0	35	0;0	35	n	0.03	1.0	38	2;0	38	n	0.03	0.5	17	0;1	17	n	0.02	1.0	50	1;1	50	n	0.16	3.5	18	2;5	18	y	0.00	0.0	54	0;0	54	n	0.01	0.5	36	0;1	36	n	0.04	1.0	27	1;1	27	n	0.00	0.0	41	0;0	41	n	0.01	0.5	40	1;0	40	n	0.03	0.5	18	0;1	18	n	ENSMUSG00000020289.16	Nprl3	chr11	protein_coding	nitrogen permease regulator-like 3
known_NIR_2720	chr11	32200278	32213025	-	32200278	32203875	5pMXE	ENSMUST00000146890.8	known	0.00	0	26	0	26	n	0.00	0	22	0	22	n	0.00	0	40	0	40	n	0.00	0	33	0	33	n	0.00	0	33	0	33	n	0.00	0	20	0	20	n	0.00	0	28	0	28	n	0.00	0	24	0	24	n	0.00	0	27	0	27	n	0.00	0	36	0	36	n	0.07	2	26	2	26	y	0.00	0	22	0	22	n	ENSMUSG00000020289.16	Nprl3	chr11	protein_coding	nitrogen permease regulator-like 3
known_NIR_2721	chr11	32203949;32205568	32205439;32213025	-	32203949	32213025	cassetteExon	ENSMUST00000141859.8	known	0.92	11.5	1	23;0	1	n	1.00	8.0	0	10;6	0	n	0.85	23.0	4	34;12	4	y	1.00	14.5	0	24;5	0	n	0.91	21.5	2	37;6	2	y	1.00	7.5	0	13;2	0	n	0.95	17.5	1	31;4	1	n	0.74	11.5	4	20;3	4	y	1.00	13.0	0	17;9	0	n	0.94	16.0	1	31;1	1	n	0.93	13.0	1	23;3	1	n	0.94	14.5	1	20;9	1	n	ENSMUSG00000020289.16	Nprl3	chr11	protein_coding	nitrogen permease regulator-like 3
known_NIR_2722	chr11	32205568;32209255	32209217;32213025	-	32205568	32213025	cassetteExon	ENSMUST00000020530.12	known	1.00	31.5	0	39;24	0	n	0.72	15.5	6	20;11	6	y	0.71	29.5	12	29;30	12	y	0.80	20.5	5	22;19	5	y	0.85	34.5	6	39;30	6	y	0.87	13.5	2	16;11	2	y	0.88	29.0	4	28;30	4	y	0.84	15.5	3	14;17	3	y	0.62	14.5	9	13;16	9	y	0.95	19.0	1	21;17	1	n	0.82	13.5	3	18;9	3	y	0.65	17.0	9	16;18	9	y	ENSMUSG00000020289.16	Nprl3	chr11	protein_coding	nitrogen permease regulator-like 3
known_NIR_2723	chr11	32209255	32213025	-	32200278	32213025	A3SS	ENSMUST00000124640.8	known	1.00	24	0	24	0	n	1.00	11	0	11	0	n	1.00	30	0	30	0	n	1.00	19	0	19	0	n	1.00	30	0	30	0	n	1.00	11	0	11	0	n	1.00	30	0	30	0	n	1.00	17	0	17	0	n	1.00	16	0	16	0	n	1.00	17	0	17	0	n	0.82	9	2	9	2	y	1.00	18	0	18	0	n	ENSMUSG00000020289.16	Nprl3	chr11	protein_coding	nitrogen permease regulator-like 3
known_NIR_2724	chr11	32209255	32213025	-	32203949	32213025	A3SS	ENSMUST00000141859.8	known	0.96	24	1	24	1	n	1.00	11	0	11	0	n	0.88	30	4	30	4	y	1.00	19	0	19	0	n	0.94	30	2	30	2	y	1.00	11	0	11	0	n	0.97	30	1	30	1	n	0.81	17	4	17	4	y	1.00	16	0	16	0	n	0.94	17	1	17	1	n	0.90	9	1	9	1	n	0.95	18	1	18	1	n	ENSMUSG00000020289.16	Nprl3	chr11	protein_coding	nitrogen permease regulator-like 3
known_NIR_2725	chr11	32213094	32217505	-	32213094	32217423	A5SS	ENSMUST00000124640.8	known	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	37	0	37	n	0.00	0	21	0	21	n	0.00	0	38	0	38	n	0.00	0	20	0	20	n	0.06	2	34	2	34	y	0.00	0	21	0	21	n	0.00	0	25	0	25	n	0.00	0	21	0	21	n	0.00	0	17	0	17	n	0.04	1	24	1	24	n	ENSMUSG00000020289.16	Nprl3	chr11	protein_coding	nitrogen permease regulator-like 3
known_NIR_2726	chr11	3241884	3243280	+	3239347	3243280	A5SS	ENSMUST00000101644.10	known	1.00	5	0	5	0	n	1.00	8	0	8	0	n	0.82	9	2	9	2	y	1.00	3	0	3	0	n	1.00	8	0	8	0	n	0.83	5	1	5	1	n	0.88	7	1	7	1	n	0.82	9	2	9	2	y	1.00	2	0	2	0	n	0.81	13	3	13	3	y	1.00	6	0	6	0	n	1.00	9	0	9	0	n	ENSMUSG00000020453.18	Patz1	chr11	protein_coding	POZ (BTB) and AT hook containing zinc finger 1
known_NIR_2727	chr11	3243343	3249034	+	3243343	3244456	3pMXE	ENSMUST00000144396.8	known	1.00	5	0	5	0	n	0.50	4	4	4	4	n	0.50	3	3	3	3	n	0.00	0	1	0	1	n	0.73	8	3	8	3	y	0.45	5	6	5	6	y	1.00	8	0	8	0	n	0.71	5	2	5	2	n	0.00	0	4	0	4	n	0.73	8	3	8	3	y	0.70	7	3	7	3	y	0.91	10	1	10	1	n	ENSMUSG00000020453.18	Patz1	chr11	protein_coding	POZ (BTB) and AT hook containing zinc finger 1
known_NIR_2728	chr11	3243343;3244547	3244456;3249034	+	3243343	3249034	cassetteExon	ENSMUST00000101644.10	known	0.00	0.0	5	0;0	5	n	0.33	2.0	4	4;0	4	n	0.33	1.5	3	3;0	3	n	1.00	0.5	0	1;0	0	n	0.20	2.0	8	3;1	8	n	0.41	3.5	5	6;1	5	n	0.00	0.0	8	0;0	8	n	0.17	1.0	5	2;0	5	n	1.00	2.0	0	4;0	0	n	0.27	3.0	8	3;3	8	y	0.18	1.5	7	3;0	7	n	0.05	0.5	10	1;0	10	n	ENSMUSG00000020453.18	Patz1	chr11	protein_coding	POZ (BTB) and AT hook containing zinc finger 1
known_NIR_2729	chr11	3249205;3256360	3256288;3257648	+	3249205	3257648	cassetteExon	ENSMUST00000101644.10	known	0.29	2.5	6	3;2	6	y	0.25	1.0	3	2;0	3	n	0.33	1.0	2	2;0	2	n	1.00	5.5	0	5;6	0	n	0.08	0.5	6	0;1	6	n	1.00	0.5	0	0;1	0	n	0.12	1.0	7	1;1	7	n	0.33	0.5	1	1;0	1	n	0.67	2.0	1	1;3	1	n	0.20	1.0	4	1;1	4	n	0.17	1.0	5	1;1	5	n	0.18	1.5	7	3;0	7	n	ENSMUSG00000020453.18	Patz1	chr11	protein_coding	POZ (BTB) and AT hook containing zinc finger 1
known_NIR_2730	chr11	32592935	32602748	+	32592935	32658188	A3SS	ENSMUST00000109366.8	known	0.38	3	5	3	5	n	0.82	9	2	9	2	y	0.73	16	6	16	6	y	0.73	11	4	11	4	y	0.65	11	6	11	6	y	0.86	12	2	12	2	y	0.58	7	5	7	5	y	0.61	11	7	11	7	y	0.70	7	3	7	3	y	0.75	12	4	12	4	y	0.64	7	4	7	4	y	0.61	14	9	14	9	y	ENSMUSG00000020271.18	Fbxw11	chr11	protein_coding	F-box and WD-40 domain protein 11
known_NIR_2731	chr11	32592935	32630201	+	32592935	32602748	3pMXE	ENSMUST00000137898.2	known	0.00	0	3	0	3	n	0.18	2	9	2	9	y	0.06	1	16	1	16	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.12	1	7	1	7	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	ENSMUSG00000020271.18	Fbxw11	chr11	protein_coding	F-box and WD-40 domain protein 11
known_NIR_2732	chr11	32592935;32658250	32658188;32661772	+	32592935;32630302	32602748;32661772	MXE	ENSMUST00000143290.2	known	0.85	8.5	1.5	5;12	3;0	n	0.40	3.0	4.5	2;4	9;0	n	0.60	12.0	8.0	6;18	16;0	n	0.59	8.0	5.5	4;12	11;0	n	0.61	10.0	6.5	6;14	11;2	y	0.45	5.0	6.0	2;8	12;0	n	0.58	7.0	5.0	5;9	7;3	y	0.62	9.0	5.5	7;11	11;0	n	0.59	5.0	3.5	3;7	7;0	n	0.63	11.0	6.5	4;18	12;1	n	0.61	7.0	4.5	4;10	7;2	y	0.60	10.5	7.0	9;12	14;0	n	ENSMUSG00000020271.18	Fbxw11	chr11	protein_coding	F-box and WD-40 domain protein 11
known_NIR_2733	chr11	33105220	33106003	-	33104060	33106003	A3SS	ENSMUST00000075641.10	known	0.07	32	443	32	443	y	0.11	54	455	54	455	y	0.13	78	541	78	541	y	0.08	40	434	40	434	y	0.11	59	489	59	489	y	0.11	25	193	25	193	y	0.09	55	538	55	538	y	0.12	24	181	24	181	y	0.08	33	392	33	392	y	0.06	36	549	36	549	y	0.09	47	466	47	466	y	0.08	56	662	56	662	y	ENSMUSG00000057113.14	Npm1	chr11	protein_coding	nucleophosmin 1
known_NIR_2734	chr11	33105431	33106003	-	33104060	33106003	A3SS	ENSMUST00000075641.10	known	0.00	1	443	1	443	n	0.00	2	455	2	455	y	0.00	0	541	0	541	n	0.00	1	434	1	434	n	0.00	0	489	0	489	n	0.00	0	193	0	193	n	0.00	0	538	0	538	n	0.00	0	181	0	181	n	0.00	0	392	0	392	n	0.00	0	549	0	549	n	0.00	2	466	2	466	y	0.00	0	662	0	662	n	ENSMUSG00000057113.14	Npm1	chr11	protein_coding	nucleophosmin 1
known_NIR_2735	chr11	33105431	33106003	-	33105220	33106003	A3SS	ENSMUST00000109354.10	known	0.03	1	32	1	32	n	0.04	2	54	2	54	y	0.00	0	78	0	78	n	0.02	1	40	1	40	n	0.00	0	59	0	59	n	0.00	0	25	0	25	n	0.00	0	55	0	55	n	0.00	0	24	0	24	n	0.00	0	33	0	33	n	0.00	0	36	0	36	n	0.04	2	47	2	47	y	0.00	0	56	0	56	n	ENSMUSG00000057113.14	Npm1	chr11	protein_coding	nucleophosmin 1
known_NIR_2736	chr11	3310586	3359046	-	3310586;3343016	3342917;3359046	ES	ENSMUST00000101638.4	known	0.00	0	4.5	0	5;4	n	0.00	0	2.0	0	2;2	n	0.21	2	7.5	2	6;9	y	0.00	0	10.0	0	14;6	n	0.00	0	4.0	0	2;6	n	0.44	2	2.5	2	4;1	n	0.00	0	10.0	0	12;8	n	0.00	0	7.5	0	10;5	n	0.00	0	7.0	0	7;7	n	0.00	0	10.0	0	11;9	n	0.00	0	8.5	0	11;6	n	0.00	0	8.5	0	9;8	n	ENSMUSG00000020451.18	Limk2	chr11	protein_coding	LIM motif-containing protein kinase 2
known_NIR_2737	chr11	3347034	3359046	-	3343016	3359046	A3SS	ENSMUST00000101638.4	known	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.10	1	9	1	9	n	0.25	2	6	2	6	n	0.00	0	6	0	6	n	0.67	2	1	2	1	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.18	2	9	2	9	y	0.14	1	6	1	6	n	0.00	0	8	0	8	n	ENSMUSG00000020451.18	Limk2	chr11	protein_coding	LIM motif-containing protein kinase 2
known_NIR_2738	chr11	3378902	3402209	-	3378902;3382620	3382400;3402209	ES	ENSMUST00000077078.12	known	0.02	1	60.5	1	55;66	n	0.00	0	53.5	0	50;57	n	0.01	2	134.5	2	124;145	y	0.01	1	86.5	1	74;99	n	0.02	2	112.5	2	109;116	y	0.00	0	75.0	0	75;75	n	0.00	0	74.5	0	69;80	n	0.00	0	68.5	0	57;80	n	0.00	0	55.0	0	50;60	n	0.00	0	68.0	0	51;85	n	0.02	1	52.5	1	45;60	n	0.00	0	82.5	0	76;89	n	ENSMUSG00000020448.17	Rnf185	chr11	protein_coding	ring finger protein 185
known_NIR_2739	chr11	3382620;3388323	3388205;3402209	-	3382620	3402209	cassetteExon	ENSMUST00000077078.12	known	0.01	0.5	66	0;1	66	n	0.04	2.5	57	2;3	57	y	0.01	1.0	145	0;2	145	n	0.00	0.0	99	0;0	99	n	0.00	0.0	116	0;0	116	n	0.02	1.5	75	1;2	75	n	0.01	0.5	80	1;0	80	n	0.00	0.0	80	0;0	80	n	0.05	3.0	60	2;4	60	y	0.01	1.0	85	0;2	85	n	0.01	0.5	60	1;0	60	n	0.01	0.5	89	1;0	89	n	ENSMUSG00000020448.17	Rnf185	chr11	protein_coding	ring finger protein 185
known_NIR_2740	chr11	3467827	3471817	-	3467827;3470916	3470752;3471817	ES	ENSMUST00000020718.10	known	0.00	0	9.0	0	10;8	n	0.00	0	9.5	0	7;12	n	0.14	1	6.0	1	3;9	n	0.00	0	7.0	0	7;7	n	0.29	5	12.0	5	9;15	y	0.00	0	5.0	0	4;6	n	0.24	5	15.5	5	10;21	y	0.00	0	7.0	0	3;11	n	0.00	0	3.5	0	4;3	n	0.00	0	8.5	0	4;13	n	0.22	3	10.5	3	13;8	y	0.00	0	10.0	0	11;9	n	ENSMUSG00000020439.18	Smtn	chr11	protein_coding	smoothelin
known_NIR_2741	chr11	3467827	3471817	-	3470916	3471817	3pMXE	ENSMUST00000144635.2	known	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.10	1	9	1	9	n	0.00	0	7	0	7	n	0.25	5	15	5	15	y	0.00	0	6	0	6	n	0.19	5	21	5	21	y	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.27	3	8	3	8	y	0.00	0	9	0	9	n	ENSMUSG00000020439.18	Smtn	chr11	protein_coding	smoothelin
known_NIR_2742	chr11	3474726;3475206	3474883;3476165	-	3474726	3476165	cassetteExon	ENSMUST00000020718.10	known	1.00	5.5	0	1;10	0	n	1.00	8.5	0	8;9	0	n	1.00	5.5	0	8;3	0	n	1.00	7.0	0	7;7	0	n	1.00	5.5	0	3;8	0	n	1.00	7.5	0	8;7	0	n	0.82	13.5	3	9;18	3	y	1.00	3.5	0	5;2	0	n	1.00	5.0	0	3;7	0	n	1.00	7.5	0	3;12	0	n	1.00	7.5	0	9;6	0	n	1.00	5.0	0	4;6	0	n	ENSMUSG00000020439.18	Smtn	chr11	protein_coding	smoothelin
known_NIR_2743	chr11	3476480	3479440	-	3476480	3477428	5pMXE	ENSMUST00000020718.10	known	0.86	6	1	6	1	n	1.00	2	0	2	0	n	1.00	11	0	11	0	n	-	-	-	-	-	-	1.00	5	0	5	0	n	1.00	5	0	5	0	n	0.79	11	3	11	3	y	1.00	8	0	8	0	n	1.00	2	0	2	0	n	1.00	5	0	5	0	n	1.00	3	0	3	0	n	1.00	10	0	10	0	n	ENSMUSG00000020439.18	Smtn	chr11	protein_coding	smoothelin
known_NIR_2744	chr11	3595454	3596557	-	3595523	3596557	A3SS	ENSMUST00000132077.4	known	0.00	0	39	0	39	n	0.00	0	35	0	35	n	0.00	0	71	0	71	n	0.00	0	38	0	38	n	0.00	0	47	0	47	n	0.00	0	53	0	53	n	0.00	0	58	0	58	n	0.00	0	48	0	48	n	0.00	0	28	0	28	n	0.00	0	60	0	60	n	0.06	2	32	2	32	y	0.00	0	62	0	62	n	ENSMUSG00000056579.19	Tug1	chr11	protein_coding	taurine upregulated gene 1
known_NIR_2745	chr11	3881584	3882013	-	3881584	3881976	5pMXE	ENSMUST00000020710.11	known	0.27	3	8	3	8	y	0.38	3	5	3	5	n	0.25	2	6	2	6	n	0.54	7	6	7	6	y	0.70	7	3	7	3	y	0.57	4	3	4	3	n	0.45	5	6	5	6	y	0.00	0	4	0	4	n	0.18	2	9	2	9	y	0.41	7	10	7	10	y	0.22	2	7	2	7	n	0.38	6	10	6	10	y	ENSMUSG00000020432.13	Tcn2	chr11	protein_coding	transcobalamin 2
known_NIR_2746	chr11	3881587	3881976	-	3881584	3881976	A3SS	ENSMUST00000020710.11	known	0.86	48	8	48	8	y	0.92	55	5	55	5	y	0.77	20	6	20	6	y	0.88	42	6	42	6	y	0.93	41	3	41	3	y	0.84	16	3	16	3	y	0.91	62	6	62	6	y	0.82	18	4	18	4	y	0.83	45	9	45	9	y	0.88	74	10	74	10	y	0.84	37	7	37	7	y	0.82	45	10	45	10	y	ENSMUSG00000020432.13	Tcn2	chr11	protein_coding	transcobalamin 2
known_NIR_2747	chr11	3881587	3881976	-	3881587	3881725	5pMXE	ENSMUST00000109992.8	known	1.00	48	0	48	0	n	0.98	55	1	55	1	n	1.00	20	0	20	0	n	0.95	42	2	42	2	y	0.98	41	1	41	1	n	1.00	16	0	16	0	n	1.00	62	0	62	0	n	0.90	18	2	18	2	y	1.00	45	0	45	0	n	0.97	74	2	74	2	y	0.97	37	1	37	1	n	1.00	45	0	45	0	n	ENSMUSG00000020432.13	Tcn2	chr11	protein_coding	transcobalamin 2
known_NIR_2748	chr11	3881587	3881976	-	3881587	3881927	5pMXE	ENSMUST00000109990.8	known	1.00	48	0	48	0	n	1.00	55	0	55	0	n	1.00	20	0	20	0	n	1.00	42	0	42	0	n	1.00	41	0	41	0	n	1.00	16	0	16	0	n	1.00	62	0	62	0	n	1.00	18	0	18	0	n	1.00	45	0	45	0	n	1.00	74	0	74	0	n	1.00	37	0	37	0	n	0.96	45	2	45	2	y	ENSMUSG00000020432.13	Tcn2	chr11	protein_coding	transcobalamin 2
known_NIR_2749	chr11	3881587	3882013	-	3881584	3882013	A3SS	ENSMUST00000109991.8	known	0.94	49	3	49	3	y	0.93	42	3	42	3	y	0.90	19	2	19	2	y	0.85	39	7	39	7	y	0.84	38	7	38	7	y	0.76	13	4	13	4	y	0.90	44	5	44	5	y	1.00	25	0	25	0	n	0.96	46	2	46	2	y	0.89	58	7	58	7	y	0.95	41	2	41	2	y	0.91	62	6	62	6	y	ENSMUSG00000020432.13	Tcn2	chr11	protein_coding	transcobalamin 2
known_NIR_2750	chr11	3881587	3882013	-	3881587	3881725	5pMXE	ENSMUST00000109992.8	known	1.00	49	0	49	0	n	0.98	42	1	42	1	n	1.00	19	0	19	0	n	0.95	39	2	39	2	y	0.97	38	1	38	1	n	1.00	13	0	13	0	n	1.00	44	0	44	0	n	0.93	25	2	25	2	y	1.00	46	0	46	0	n	0.97	58	2	58	2	y	0.98	41	1	41	1	n	1.00	62	0	62	0	n	ENSMUSG00000020432.13	Tcn2	chr11	protein_coding	transcobalamin 2
known_NIR_2751	chr11	3881587	3882013	-	3881587	3881927	5pMXE	ENSMUST00000109990.8	known	1.00	49	0	49	0	n	1.00	42	0	42	0	n	1.00	19	0	19	0	n	1.00	39	0	39	0	n	1.00	38	0	38	0	n	1.00	13	0	13	0	n	1.00	44	0	44	0	n	1.00	25	0	25	0	n	1.00	46	0	46	0	n	1.00	58	0	58	0	n	1.00	41	0	41	0	n	0.97	62	2	62	2	y	ENSMUSG00000020432.13	Tcn2	chr11	protein_coding	transcobalamin 2
known_NIR_2752	chr11	3881587	3882013	-	3881587	3881976	A5SS	ENSMUST00000109989.10	known	0.51	49	48	49	48	y	0.43	42	55	42	55	y	0.49	19	20	19	20	y	0.48	39	42	39	42	y	0.48	38	41	38	41	y	0.45	13	16	13	16	y	0.42	44	62	44	62	y	0.58	25	18	25	18	y	0.51	46	45	46	45	y	0.44	58	74	58	74	y	0.53	41	37	41	37	y	0.58	62	45	62	45	y	ENSMUSG00000020432.13	Tcn2	chr11	protein_coding	transcobalamin 2
known_NIR_2753	chr11	3981661	3985123	+	3981517	3985123	A5SS	ENSMUST00000129689.8	known	0.46	12	14	12	14	y	0.77	17	5	17	5	y	0.62	23	14	23	14	y	0.55	30	25	30	25	y	0.48	20	22	20	22	y	0.50	10	10	10	10	y	0.50	22	22	22	22	y	0.56	25	20	25	20	y	0.70	21	9	21	9	y	0.63	32	19	32	19	y	0.50	13	13	13	13	y	0.67	32	16	32	16	y	ENSMUSG00000019368.14	Sec14l4	chr11	protein_coding	SEC14-like lipid binding 4
known_NIR_2754	chr11	3981899	3985123	+	3981517	3985123	A5SS	ENSMUST00000129689.8	known	0.94	202	14	202	14	y	0.96	127	5	127	5	y	0.93	176	14	176	14	y	0.92	275	25	275	25	y	0.95	430	22	430	22	y	0.94	167	10	167	10	y	0.93	278	22	278	22	y	0.92	230	20	230	20	y	0.94	153	9	153	9	y	0.95	348	19	348	19	y	0.94	195	13	195	13	y	0.94	239	16	239	16	y	ENSMUSG00000019368.14	Sec14l4	chr11	protein_coding	SEC14-like lipid binding 4
known_NIR_2755	chr11	3981899	3985123	+	3981661	3985123	A5SS	ENSMUST00000126423.8	known	0.94	202	12	202	12	y	0.88	127	17	127	17	y	0.88	176	23	176	23	y	0.90	275	30	275	30	y	0.96	430	20	430	20	y	0.94	167	10	167	10	y	0.93	278	22	278	22	y	0.90	230	25	230	25	y	0.88	153	21	153	21	y	0.92	348	32	348	32	y	0.94	195	13	195	13	y	0.88	239	32	239	32	y	ENSMUSG00000019368.14	Sec14l4	chr11	protein_coding	SEC14-like lipid binding 4
known_NIR_2756	chr11	3992251	3993287	+	3992251	3992399	3pMXE	ENSMUST00000129689.8	known	0.99	245	2	245	2	y	0.98	219	5	219	5	y	0.99	263	2	263	2	y	0.99	337	3	337	3	y	0.98	537	9	537	9	y	1.00	256	0	256	0	n	1.00	377	0	377	0	n	1.00	307	0	307	0	n	1.00	218	0	218	0	n	0.99	377	3	377	3	y	0.99	228	2	228	2	y	0.99	401	4	401	4	y	ENSMUSG00000019368.14	Sec14l4	chr11	protein_coding	SEC14-like lipid binding 4
known_NIR_2757	chr11	4044516	4044814	-	4044516	4045216	A5SS	ENSMUST00000004868.6	known	0.00	0	45	0	45	n	0.00	0	45	0	45	n	0.00	0	26	0	26	n	0.00	0	37	0	37	n	0.00	0	77	0	77	n	0.15	3	17	3	17	y	0.00	0	49	0	49	n	0.00	0	25	0	25	n	0.00	0	40	0	40	n	0.02	2	90	2	90	y	0.04	3	78	3	78	y	0.05	3	61	3	61	y	ENSMUSG00000004748.6	Mtfp1	chr11	protein_coding	mitochondrial fission process 1
known_NIR_2758	chr11	40576140	40578428	-	40576168	40578428	A3SS	ENSMUST00000040167.11	known	0.10	7	61	7	61	y	0.00	0	57	0	57	n	0.05	4	76	4	76	y	0.12	9	67	9	67	y	0.05	5	101	5	101	y	0.04	2	44	2	44	y	0.11	10	80	10	80	y	0.17	6	29	6	29	y	0.11	7	59	7	59	y	0.08	7	82	7	82	y	0.04	3	75	3	75	y	0.07	7	96	7	96	y	ENSMUSG00000042032.14	Mat2b	chr11	protein_coding	methionine adenosyltransferase II, beta
known_NIR_2759	chr11	40578622	40585630	-	40578622	40583305	5pMXE	ENSMUST00000040167.11	known	0.28	19	49	19	49	y	0.42	20	28	20	28	y	0.12	9	68	9	68	y	0.35	31	58	31	58	y	0.33	35	71	35	71	y	0.35	20	37	20	37	y	0.24	18	56	18	56	y	0.36	28	49	28	49	y	0.39	22	34	22	34	y	0.31	36	82	36	82	y	0.29	25	60	25	60	y	0.18	17	80	17	80	y	ENSMUSG00000042032.14	Mat2b	chr11	protein_coding	methionine adenosyltransferase II, beta
known_NIR_2760	chr11	4061937	4066681	-	4061937	4073166	A5SS	ENSMUST00000145173.2	known	1.00	663	1	663	1	n	1.00	419	0	419	0	n	1.00	474	2	474	2	y	1.00	909	1	909	1	n	1.00	1098	3	1098	3	y	0.99	395	4	395	4	y	1.00	809	2	809	2	y	0.99	481	4	481	4	y	1.00	624	0	624	0	n	1.00	1067	0	1067	0	n	1.00	749	1	749	1	n	1.00	872	0	872	0	n	ENSMUSG00000003585.14	Sec14l2	chr11	protein_coding	SEC14-like lipid binding 2
known_NIR_2761	chr11	4061937	4068625	-	4061937;4066756	4066681;4068625	ES	ENSMUST00000003681.8	known	0.01	7	600.0	7	663;537	y	0.01	5	377.5	5	419;336	y	0.01	4	422.0	4	474;370	y	0.01	9	785.5	9	909;662	y	0.02	21	1006.0	21	1098;914	y	0.01	2	366.5	2	395;338	y	0.01	6	706.0	6	809;603	y	0.01	4	427.0	4	481;373	y	0.01	3	561.5	3	624;499	y	0.02	18	929.5	18	1067;792	y	0.00	3	681.0	3	749;613	y	0.02	13	750.0	13	872;628	y	ENSMUSG00000003585.14	Sec14l2	chr11	protein_coding	SEC14-like lipid binding 2
known_NIR_2762	chr11	4061937	4068625	-	4066756	4068625	3pMXE	ENSMUST00000136420.2	known	0.01	7	537	7	537	y	0.01	5	336	5	336	y	0.01	4	370	4	370	y	0.01	9	662	9	662	y	0.02	21	914	21	914	y	0.01	2	338	2	338	y	0.01	6	603	6	603	y	0.01	4	373	4	373	y	0.01	3	499	3	499	y	0.02	18	792	18	792	y	0.00	3	613	3	613	y	0.02	13	628	13	628	y	ENSMUSG00000003585.14	Sec14l2	chr11	protein_coding	SEC14-like lipid binding 2
known_NIR_2763	chr11	4061937	4073166	-	4061937	4068625	5pMXE	ENSMUST00000123901.8	known	0.12	1	7	1	7	n	0.00	0	5	0	5	n	0.33	2	4	2	4	n	0.10	1	9	1	9	n	0.12	3	21	3	21	y	0.67	4	2	4	2	n	0.25	2	6	2	6	n	0.50	4	4	4	4	n	0.00	0	3	0	3	n	0.00	0	18	0	18	n	0.25	1	3	1	3	n	0.00	0	13	0	13	n	ENSMUSG00000003585.14	Sec14l2	chr11	protein_coding	SEC14-like lipid binding 2
known_NIR_2764	chr11	40625082	40626845	+	40624981	40626845	A5SS	ENSMUST00000020578.11	known	0.00	0	79	0	79	n	0.07	5	63	5	63	y	0.00	0	90	0	90	n	0.00	0	65	0	65	n	0.06	6	97	6	97	y	0.00	0	53	0	53	n	0.00	0	90	0	90	n	0.07	3	41	3	41	y	0.00	0	53	0	53	n	0.02	3	119	3	119	y	0.05	4	80	4	80	y	0.04	3	71	3	71	y	ENSMUSG00000020328.11	Nudcd2	chr11	protein_coding	NudC domain containing 2
known_NIR_2765	chr11	40626893	40627395	+	40626893	40627320	A3SS	ENSMUST00000020578.11	known	0.05	5	87	5	87	y	0.01	1	78	1	78	n	0.10	10	88	10	88	y	0.06	5	80	5	80	y	0.00	0	92	0	92	n	0.04	3	72	3	72	y	0.04	5	109	5	109	y	0.02	1	42	1	42	n	0.05	3	62	3	62	y	0.08	9	105	9	105	y	0.08	8	90	8	90	y	0.08	8	94	8	94	y	ENSMUSG00000020328.11	Nudcd2	chr11	protein_coding	NudC domain containing 2
known_NIR_2766	chr11	4085563	4086560	+	4085563;4085957	4085814;4086560	ES	ENSMUST00000003677.11	known	0.00	0	26.0	0	23;29	n	0.00	0	29.5	0	34;25	n	0.00	0	31.5	0	33;30	n	0.03	1	28.0	1	32;24	n	0.00	0	32.5	0	22;43	n	0.00	0	22.5	0	16;29	n	0.00	0	40.5	0	44;37	n	0.00	0	22.5	0	24;21	n	0.00	0	22.5	0	18;27	n	0.05	2	36.0	2	40;32	y	0.00	0	19.5	0	11;28	n	0.00	0	33.0	0	38;28	n	ENSMUSG00000003581.15	Rnf215	chr11	protein_coding	ring finger protein 215
known_NIR_2767	chr11	4086797	4087309	+	4086797	4087212	A3SS	ENSMUST00000003677.11	known	0.04	1	23	1	23	n	0.00	0	17	0	17	n	0.04	1	22	1	22	n	0.07	2	26	2	26	y	0.00	0	28	0	28	n	0.00	0	12	0	12	n	0.03	1	34	1	34	n	0.05	1	21	1	21	n	0.00	0	21	0	21	n	0.00	0	32	0	32	n	0.00	0	31	0	31	n	0.00	0	23	0	23	n	ENSMUSG00000003581.15	Rnf215	chr11	protein_coding	ring finger protein 215
known_NIR_2768	chr11	43311235	43311855	-	43311235	43311934	A5SS	ENSMUST00000020687.15	known	0.00	0	124	0	124	n	0.00	0	141	0	141	n	0.00	0	85	0	85	n	0.01	1	94	1	94	n	0.00	0	137	0	137	n	0.00	0	59	0	59	n	0.02	4	158	4	158	y	0.00	0	65	0	65	n	0.01	1	106	1	106	n	0.00	0	153	0	153	n	0.01	2	157	2	157	y	0.02	4	162	4	162	y	ENSMUSG00000020415.17	Pttg1	chr11	protein_coding	pituitary tumor-transforming gene 1
known_NIR_2769	chr11	43316508	43317001	-	43316508	43317028	A5SS	ENSMUST00000020687.15	known	0.00	0	25	0	25	n	0.00	0	11	0	11	n	0.05	1	18	1	18	n	0.05	1	18	1	18	n	0.15	4	23	4	23	y	0.11	1	8	1	8	n	0.00	0	26	0	26	n	0.12	1	7	1	7	n	0.00	0	16	0	16	n	0.23	6	20	6	20	y	0.16	4	21	4	21	y	0.25	7	21	7	21	y	ENSMUSG00000020415.17	Pttg1	chr11	protein_coding	pituitary tumor-transforming gene 1
known_NIR_2770	chr11	43316508	43317016	-	43316508	43317028	A5SS	ENSMUST00000020687.15	known	0.04	1	25	1	25	n	0.08	1	11	1	11	n	0.10	2	18	2	18	y	0.00	0	18	0	18	n	0.00	0	23	0	23	n	0.00	0	8	0	8	n	0.00	0	26	0	26	n	0.12	1	7	1	7	n	0.11	2	16	2	16	y	0.05	1	20	1	20	n	0.05	1	21	1	21	n	0.05	1	21	1	21	n	ENSMUSG00000020415.17	Pttg1	chr11	protein_coding	pituitary tumor-transforming gene 1
known_NIR_2771	chr11	43324646	43328172	+	43324646;43327259	43327181;43328172	ES	ENSMUST00000151880.8	known	0.48	8	8.5	8	7;10	y	0.53	5	4.5	5	3;6	y	0.71	23	9.5	23	5;14	y	0.47	12	13.5	12	11;16	y	0.49	14	14.5	14	11;18	y	0.38	5	8.0	5	7;9	y	0.59	16	11.0	16	9;13	y	0.50	11	11.0	11	10;12	y	0.61	18	11.5	18	5;18	y	0.44	14	18.0	14	9;27	y	0.63	11	6.5	11	5;8	y	0.53	10	9.0	10	4;14	y	ENSMUSG00000020409.11	Slu7	chr11	protein_coding	SLU7 splicing factor homolog (S. cerevisiae)
known_NIR_2772	chr11	43329711	43329848	+	43329711	43329980	A3SS	ENSMUST00000151880.8	known	0.00	0	39	0	39	n	0.03	1	28	1	28	n	0.03	1	39	1	39	n	0.04	2	46	2	46	y	0.02	1	54	1	54	n	0.00	0	23	0	23	n	0.00	0	53	0	53	n	0.00	0	18	0	18	n	0.00	0	25	0	25	n	0.00	0	62	0	62	n	0.00	0	41	0	41	n	0.00	0	48	0	48	n	ENSMUSG00000020409.11	Slu7	chr11	protein_coding	SLU7 splicing factor homolog (S. cerevisiae)
known_NIR_2773	chr11	43575052	43595361	+	43573443	43595361	A5SS	ENSMUST00000061070.6	known	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.40	2	3	2	3	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.50	5	5	5	5	y	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.17	1	5	1	5	n	ENSMUSG00000044950.8	Pwwp2a	chr11	protein_coding	PWWP domain containing 2A
known_NIR_2774	chr11	43596304	43611048	+	43596304;43607976	43607857;43611048	ES	ENSMUST00000094294.5	known	0.85	11	2.0	11	3;1	n	0.73	16	6.0	16	3;9	y	0.94	16	1.0	16	2;0	n	0.64	8	4.5	8	5;4	y	0.62	9	5.5	9	6;5	y	0.57	4	3.0	4	2;4	y	0.47	4	4.5	4	6;3	y	0.80	6	1.5	6	1;2	n	0.80	8	2.0	8	2;2	y	0.87	10	1.5	10	3;0	n	0.67	2	1.0	2	1;1	n	0.83	12	2.5	12	4;1	n	ENSMUSG00000044950.8	Pwwp2a	chr11	protein_coding	PWWP domain containing 2A
known_NIR_2775	chr11	43608667	43611048	+	43596304	43611048	A5SS	ENSMUST00000129229.2	known	0.00	0	11	0	11	n	0.06	1	16	1	16	n	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.18	2	9	2	9	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.09	1	10	1	10	n	0.00	0	2	0	2	n	0.00	0	12	0	12	n	ENSMUSG00000044950.8	Pwwp2a	chr11	protein_coding	PWWP domain containing 2A
known_NIR_2776	chr11	4432939;4434697	4434671;4435363	-	4432939	4435363	cassetteExon	ENSMUST00000109943.10	known	0.00	0.0	35	0;0	35	n	0.00	0.0	30	0;0	30	n	0.00	0.0	58	0;0	58	n	0.03	1.5	44	0;3	44	n	0.00	0.0	80	0;0	80	n	0.00	0.0	41	0;0	41	n	0.05	2.0	41	2;2	41	y	0.00	0.0	30	0;0	30	n	0.00	0.0	30	0;0	30	n	0.03	1.5	57	2;1	57	n	0.03	1.5	45	2;1	45	n	0.00	0.0	50	0;0	50	n	ENSMUSG00000034354.18	Mtmr3	chr11	protein_coding	myotubularin related protein 3
known_NIR_2777	chr11	4435451	4437234	-	4435451	4435879	A5SS	ENSMUST00000155566.8	known	0.41	11	16	11	16	y	0.12	3	21	3	21	y	0.32	17	36	17	36	y	0.30	15	35	15	35	y	0.31	18	41	18	41	y	0.24	7	22	7	22	y	0.35	15	28	15	28	y	0.41	9	13	9	13	y	0.26	6	17	6	17	y	0.17	8	38	8	38	y	0.27	9	24	9	24	y	0.22	11	40	11	40	y	ENSMUSG00000034354.18	Mtmr3	chr11	protein_coding	myotubularin related protein 3
known_NIR_2778	chr11	4435451;4435989	4435879;4437234	-	4435451	4437234	cassetteExon	ENSMUST00000109943.10	known	0.67	22.0	11	16;28	11	y	0.89	24.0	3	21;27	3	y	0.71	41.5	17	36;47	17	y	0.71	36.5	15	35;38	15	y	0.72	46.0	18	41;51	18	y	0.76	22.5	7	22;23	7	y	0.66	29.5	15	28;31	15	y	0.60	13.5	9	13;14	9	y	0.77	20.5	6	17;24	6	y	0.81	33.5	8	38;29	8	y	0.74	26.0	9	24;28	9	y	0.76	35.0	11	40;30	11	y	ENSMUSG00000034354.18	Mtmr3	chr11	protein_coding	myotubularin related protein 3
known_NIR_2779	chr11	44410495	44415755	+	44410101	44415755	A5SS	ENSMUST00000019333.10	known	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.00	0	3	0	3	n	0.14	1	6	1	6	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.08	3	33	3	33	y	ENSMUSG00000019189.14	Rnf145	chr11	protein_coding	ring finger protein 145
known_NIR_2780	chr11	4481305	4496189	-	4481305	4544603	A5SS	ENSMUST00000109943.10	known	0.00	0	12	0	12	n	0.25	2	6	2	6	n	0.06	1	17	1	17	n	0.14	3	18	3	18	y	0.05	1	20	1	20	n	0.17	1	5	1	5	n	0.24	4	13	4	13	y	0.07	1	13	1	13	n	0.23	3	10	3	10	y	0.08	2	24	2	24	y	0.13	2	13	2	13	y	0.00	0	13	0	13	n	ENSMUSG00000034354.18	Mtmr3	chr11	protein_coding	myotubularin related protein 3
known_NIR_2781	chr11	45785956	45797008	+	45785956;45793112	45793038;45797008	ES	ENSMUST00000109261.11	known	0.24	13	41.0	13	47;35	y	0.16	7	37.5	7	40;35	y	0.14	19	117.5	19	133;102	y	0.08	7	78.5	7	93;64	y	0.14	16	97.0	16	101;93	y	0.12	8	61.0	8	64;58	y	0.20	14	55.0	14	64;46	y	0.10	6	52.0	6	53;51	y	0.17	7	33.5	7	45;22	y	0.15	11	60.5	11	66;55	y	0.14	8	47.5	8	50;45	y	0.19	13	56.5	13	59;54	y	ENSMUSG00000006169.21	Clint1	chr11	protein_coding	clathrin interactor 1
known_NIR_2782	chr11	45797294	45798721	+	45797294	45798667	A3SS	ENSMUST00000109261.11	known	0.73	43	16	43	16	y	0.82	36	8	36	8	y	0.91	166	17	166	17	y	0.78	65	18	65	18	y	0.71	84	34	84	34	y	0.85	66	12	66	12	y	0.77	66	20	66	20	y	0.84	81	15	81	15	y	0.82	46	10	46	10	y	0.75	43	14	43	14	y	0.75	53	18	53	18	y	0.84	64	12	64	12	y	ENSMUSG00000006169.21	Clint1	chr11	protein_coding	clathrin interactor 1
known_NIR_2783	chr11	4622497	4629252	+	4622497;4623447	4623328;4629252	ES	ENSMUST00000070257.14	known	0.00	0	46.0	0	47;45	n	0.00	0	55.5	0	56;55	n	0.00	0	66.5	0	71;62	n	0.00	0	61.0	0	70;52	n	0.00	0	65.5	0	73;58	n	0.00	0	39.5	0	44;35	n	0.04	2	50.5	2	65;36	y	0.00	0	30.5	0	39;22	n	0.04	2	43.5	2	49;38	y	0.00	0	62.5	0	65;60	n	0.00	0	51.0	0	60;42	n	0.00	0	58.5	0	47;70	n	ENSMUSG00000020412.17	Ascc2	chr11	protein_coding	activating signal cointegrator 1 complex subunit 2
known_NIR_2784	chr11	46327836	46331390	+	46330802	46331390	A5SS&ES	ENSMUST00000109232.4	known	0.00	0	37	0	37	n	0.05	2	40	2	40	y	0.00	0	66	0	66	n	0.00	0	40	0	40	n	0.00	0	65	0	65	n	0.03	1	35	1	35	n	0.02	1	60	1	60	n	0.00	0	25	0	25	n	0.10	3	28	3	28	y	0.02	1	55	1	55	n	0.06	2	31	2	31	y	0.09	4	43	4	43	y	ENSMUSG00000020397.16	Med7	chr11	protein_coding	mediator complex subunit 7
known_NIR_2785	chr11	46327836;46330802	46330633;46331390	+	46327836	46331390	cassetteExon	ENSMUST00000152119.2	known	1.00	20.0	0	3;37	0	n	0.92	22.0	2	4;40	2	y	1.00	33.5	0	1;66	0	n	1.00	22.5	0	5;40	0	n	1.00	34.0	0	3;65	0	n	0.95	18.5	1	2;35	1	n	0.97	33.5	1	7;60	1	n	1.00	14.5	0	4;25	0	n	0.83	15.0	3	2;28	3	y	0.97	31.5	1	8;55	1	n	0.90	18.5	2	6;31	2	y	0.85	22.5	4	2;43	4	y	ENSMUSG00000020397.16	Med7	chr11	protein_coding	mediator complex subunit 7
known_NIR_2786	chr11	46328018	46330633	+	46327836	46330633	A5SS	ENSMUST00000140027.8	known	0.86	19	3	19	3	y	0.86	25	4	25	4	y	0.96	25	1	25	1	n	0.83	25	5	25	5	y	0.89	25	3	25	3	y	0.89	17	2	17	2	y	0.74	20	7	20	7	y	0.76	13	4	13	4	y	0.90	18	2	18	2	y	0.71	20	8	20	8	y	0.70	14	6	14	6	y	0.89	16	2	16	2	y	ENSMUSG00000020397.16	Med7	chr11	protein_coding	mediator complex subunit 7
known_NIR_2787	chr11	46328018	46331390	+	46330802	46331390	A5SS&ES	ENSMUST00000140027.8	known	0.00	0	37	0	37	n	0.02	1	40	1	40	n	0.01	1	66	1	66	n	0.02	1	40	1	40	n	0.03	2	65	2	65	y	0.00	0	35	0	35	n	0.02	1	60	1	60	n	0.00	0	25	0	25	n	0.00	0	28	0	28	n	0.13	8	55	8	55	y	0.03	1	31	1	31	n	0.07	3	43	3	43	y	ENSMUSG00000020397.16	Med7	chr11	protein_coding	mediator complex subunit 7
known_NIR_2788	chr11	46328018;46330651	46330633;46331390	+	46328018	46331390	cassetteExon	ENSMUST00000170928.8	known	1.00	10.0	0	19;1	0	n	0.93	12.5	1	25;0	1	n	0.93	12.5	1	25;0	1	n	0.93	13.0	1	25;1	1	n	0.87	13.5	2	25;2	2	y	1.00	9.0	0	17;1	0	n	0.91	10.0	1	20;0	1	n	1.00	6.5	0	13;0	0	n	1.00	9.0	0	18;0	0	n	0.56	10.0	8	20;0	8	n	0.88	7.0	1	14;0	1	n	0.73	8.0	3	16;0	3	n	ENSMUSG00000020397.16	Med7	chr11	protein_coding	mediator complex subunit 7
known_NIR_2789	chr11	46328018;46330802	46330633;46331390	+	46328018	46331390	cassetteExon	ENSMUST00000170928.8	known	1.00	28.0	0	19;37	0	n	0.97	32.5	1	25;40	1	n	0.98	45.5	1	25;66	1	n	0.97	32.5	1	25;40	1	n	0.96	45.0	2	25;65	2	y	1.00	26.0	0	17;35	0	n	0.98	40.0	1	20;60	1	n	1.00	19.0	0	13;25	0	n	1.00	23.0	0	18;28	0	n	0.82	37.5	8	20;55	8	y	0.96	22.5	1	14;31	1	n	0.91	29.5	3	16;43	3	y	ENSMUSG00000020397.16	Med7	chr11	protein_coding	mediator complex subunit 7
known_NIR_2790	chr11	46328139	46330633	+	46327836	46330633	A5SS	ENSMUST00000140027.8	known	0.40	2	3	2	3	n	0.20	1	4	1	4	n	0.86	6	1	6	1	n	0.17	1	5	1	5	n	0.62	5	3	5	3	n	0.33	1	2	1	2	n	0.00	0	7	0	7	n	0.43	3	4	3	4	n	0.00	0	2	0	2	n	0.38	5	8	5	8	y	0.00	0	6	0	6	n	0.33	1	2	1	2	n	ENSMUSG00000020397.16	Med7	chr11	protein_coding	mediator complex subunit 7
known_NIR_2791	chr11	46328139	46330633	+	46328018	46330633	A5SS	ENSMUST00000109231.2	known	0.10	2	19	2	19	y	0.04	1	25	1	25	n	0.19	6	25	6	25	y	0.04	1	25	1	25	n	0.17	5	25	5	25	y	0.06	1	17	1	17	n	0.00	0	20	0	20	n	0.19	3	13	3	13	y	0.00	0	18	0	18	n	0.20	5	20	5	20	y	0.00	0	14	0	14	n	0.06	1	16	1	16	n	ENSMUSG00000020397.16	Med7	chr11	protein_coding	mediator complex subunit 7
known_NIR_2792	chr11	46330651	46331390	+	46330802	46331390	A5SS	ENSMUST00000020665.13	known	0.03	1	37	1	37	n	0.00	0	40	0	40	n	0.00	0	66	0	66	n	0.02	1	40	1	40	n	0.03	2	65	2	65	y	0.03	1	35	1	35	n	0.00	0	60	0	60	n	0.00	0	25	0	25	n	0.00	0	28	0	28	n	0.00	0	55	0	55	n	0.00	0	31	0	31	n	0.00	0	43	0	43	n	ENSMUSG00000020397.16	Med7	chr11	protein_coding	mediator complex subunit 7
known_NIR_2793	chr11	4652220	4654157	-	4652220	4653904	5pMXE	ENSMUST00000130236.2	known	0.84	712	132	712	132	y	0.89	856	108	856	108	y	0.90	777	87	777	87	y	0.83	680	138	680	138	y	0.86	920	150	920	150	y	0.89	457	55	457	55	y	0.84	1020	200	1020	200	y	0.87	442	68	442	68	y	0.86	695	111	695	111	y	0.88	1189	158	1189	158	y	0.86	1020	163	1020	163	y	0.87	1043	154	1043	154	y	ENSMUSG00000059534.9	Uqcr10	chr11	protein_coding	ubiquinol-cytochrome c reductase, complex III subunit X
known_NIR_2794	chr11	4652220;4653989	4653904;4654157	-	4652220	4654157	cassetteExon	ENSMUST00000058407.6	known	0.15	121.0	712	132;110	712	y	0.10	99.0	856	108;90	856	y	0.10	86.0	777	87;85	777	y	0.15	118.5	680	138;99	680	y	0.13	143.0	920	150;136	920	y	0.10	49.0	457	55;43	457	y	0.15	182.0	1020	200;164	1020	y	0.13	67.0	442	68;66	442	y	0.12	98.5	695	111;86	695	y	0.12	157.5	1189	158;157	1189	y	0.13	149.0	1020	163;135	1020	y	0.12	147.0	1043	154;140	1043	y	ENSMUSG00000059534.9	Uqcr10	chr11	protein_coding	ubiquinol-cytochrome c reductase, complex III subunit X
known_NIR_2795	chr11	46580365	46597762	-	46580365	46589370	5pMXE	ENSMUST00000109225.9	known	0.83	158	33	158	33	y	0.91	155	16	155	16	y	0.90	164	18	164	18	y	0.88	222	29	222	29	y	0.91	275	28	275	28	y	0.95	115	6	115	6	y	0.88	262	35	262	35	y	0.90	150	16	150	16	y	0.91	187	19	187	19	y	0.90	246	27	246	27	y	0.89	158	20	158	20	y	0.91	225	21	225	21	y	ENSMUSG00000040413.16	Timd2	chr11	protein_coding	T cell immunoglobulin and mucin domain containing 2
known_NIR_2796	chr11	46580365;46589435	46589370;46597762	-	46580365	46597762	cassetteExon	ENSMUST00000055102.13	known	0.14	26.5	158	33;20	158	y	0.07	12.0	155	16;8	155	y	0.08	14.0	164	18;10	164	y	0.10	23.5	222	29;18	222	y	0.08	22.5	275	28;17	275	y	0.04	5.0	115	6;4	115	y	0.09	24.5	262	35;14	262	y	0.06	10.0	150	16;4	150	y	0.07	15.0	187	19;11	187	y	0.07	19.0	246	27;11	246	y	0.09	16.5	158	20;13	158	y	0.07	17.0	225	21;13	225	y	ENSMUSG00000040413.16	Timd2	chr11	protein_coding	T cell immunoglobulin and mucin domain containing 2
known_NIR_2797	chr11	4718273;4730622	4730578;4732187	-	4718273	4732187	cassetteExon	ENSMUST00000109910.9	known	0.93	26.0	2	25;27	2	y	0.84	25.5	5	31;20	5	y	0.72	26.0	10	26;26	10	y	0.94	31.5	2	32;31	2	y	0.88	37.5	5	32;43	5	y	0.77	24.0	7	23;25	7	y	0.87	32.5	5	30;35	5	y	0.90	26.5	3	22;31	3	y	0.81	21.5	5	22;21	5	y	0.83	25.0	5	19;31	5	y	0.88	22.5	3	18;27	3	y	0.91	20.0	2	16;24	2	y	ENSMUSG00000009073.17	Nf2	chr11	protein_coding	neurofibromin 2
known_NIR_2798	chr11	4722638	4730578	-	4718273	4730578	A3SS	ENSMUST00000056290.13	known	0.04	1	25	1	25	n	0.00	0	31	0	31	n	0.00	0	26	0	26	n	0.03	1	32	1	32	n	0.06	2	32	2	32	y	0.08	2	23	2	23	y	0.09	3	30	3	30	y	0.08	2	22	2	22	y	0.08	2	22	2	22	y	0.10	2	19	2	19	y	0.22	5	18	5	18	y	0.11	2	16	2	16	y	ENSMUSG00000009073.17	Nf2	chr11	protein_coding	neurofibromin 2
known_NIR_2799	chr11	4730034	4730578	-	4718273	4730578	A3SS	ENSMUST00000056290.13	known	0.00	0	25	0	25	n	0.03	1	31	1	31	n	0.21	7	26	7	26	y	0.03	1	32	1	32	n	0.06	2	32	2	32	y	0.00	0	23	0	23	n	0.14	5	30	5	30	y	0.04	1	22	1	22	n	0.00	0	22	0	22	n	0.17	4	19	4	19	y	0.05	1	18	1	18	n	0.06	1	16	1	16	n	ENSMUSG00000009073.17	Nf2	chr11	protein_coding	neurofibromin 2
known_NIR_2800	chr11	4744917	4753678	-	4744917	4749861	A5SS&ES	ENSMUST00000152656.8	known	0.11	5	39	5	39	y	0.23	6	20	6	20	y	0.18	9	41	9	41	y	0.04	2	48	2	48	y	0.04	2	46	2	46	y	0.08	2	23	2	23	y	0.08	4	45	4	45	y	0.05	1	18	1	18	n	0.03	1	28	1	28	n	0.20	8	33	8	33	y	0.10	3	26	3	26	y	0.24	6	19	6	19	y	ENSMUSG00000009073.17	Nf2	chr11	protein_coding	neurofibromin 2
known_NIR_2801	chr11	4744917	4753678	-	4744917;4749995	4749861;4753678	ES	ENSMUST00000109910.9	known	0.14	5	30.0	5	39;21	y	0.27	6	16.5	6	20;13	y	0.20	9	36.5	9	41;32	y	0.05	2	36.0	2	48;24	y	0.05	2	35.5	2	46;25	y	0.10	2	19.0	2	23;15	y	0.10	4	38.0	4	45;31	y	0.05	1	18.0	1	18;18	n	0.04	1	24.0	1	28;20	n	0.20	8	31.5	8	33;30	y	0.13	3	19.5	3	26;13	y	0.28	6	15.5	6	19;12	y	ENSMUSG00000009073.17	Nf2	chr11	protein_coding	neurofibromin 2
known_NIR_2802	chr11	4744917	4753678	-	4749995	4753678	3pMXE	ENSMUST00000124878.3	known	0.19	5	21	5	21	y	0.32	6	13	6	13	y	0.22	9	32	9	32	y	0.08	2	24	2	24	y	0.07	2	25	2	25	y	0.12	2	15	2	15	y	0.11	4	31	4	31	y	0.05	1	18	1	18	n	0.05	1	20	1	20	n	0.21	8	30	8	30	y	0.19	3	13	3	13	y	0.33	6	12	6	12	y	ENSMUSG00000009073.17	Nf2	chr11	protein_coding	neurofibromin 2
known_NIR_2803	chr11	4766165	4770368	-	4766165	4768505	5pMXE	ENSMUST00000137926.9	known	0.00	0	15	0	15	n	0.00	0	16	0	16	n	0.09	3	32	3	32	y	0.00	0	25	0	25	n	0.06	2	31	2	31	y	0.08	2	23	2	23	y	0.03	1	35	1	35	n	0.07	2	28	2	28	y	0.00	0	28	0	28	n	0.09	2	21	2	21	y	0.00	0	22	0	22	n	0.08	3	35	3	35	y	ENSMUSG00000009073.17	Nf2	chr11	protein_coding	neurofibromin 2
known_NIR_2804	chr11	4766165	4770368	-	4766165;4768627	4768505;4770368	ES	ENSMUST00000109910.9	known	0.00	0	24.5	0	15;34	n	0.00	0	21.0	0	16;26	n	0.08	3	33.5	3	32;35	y	0.00	0	31.0	0	25;37	n	0.05	2	38.0	2	31;45	y	0.09	2	20.5	2	23;18	y	0.03	1	36.0	1	35;37	n	0.07	2	25.5	2	28;23	y	0.00	0	23.0	0	28;18	n	0.07	2	26.0	2	21;31	y	0.00	0	21.5	0	22;21	n	0.08	3	32.5	3	35;30	y	ENSMUSG00000009073.17	Nf2	chr11	protein_coding	neurofibromin 2
known_NIR_2805	chr11	4766165	4770368	-	4768627	4770368	3pMXE	ENSMUST00000167480.2	known	0.00	0	34	0	34	n	0.00	0	26	0	26	n	0.08	3	35	3	35	y	0.00	0	37	0	37	n	0.04	2	45	2	45	y	0.10	2	18	2	18	y	0.03	1	37	1	37	n	0.08	2	23	2	23	y	0.00	0	18	0	18	n	0.06	2	31	2	31	y	0.00	0	21	0	21	n	0.09	3	30	3	30	y	ENSMUSG00000009073.17	Nf2	chr11	protein_coding	neurofibromin 2
known_NIR_2806	chr11	4824103	4833368	+	4833253	4833368	5pMXE	ENSMUST00000139737.2	known	0.94	307	18	307	18	y	0.95	253	12	253	12	y	0.71	60	25	60	25	y	0.96	375	16	375	16	y	0.88	377	50	377	50	y	0.82	76	17	76	17	y	0.90	334	37	334	37	y	0.77	102	31	102	31	y	0.95	336	19	336	19	y	0.95	471	24	471	24	y	0.95	325	16	325	16	y	0.93	395	30	395	30	y	ENSMUSG00000034285.16	Nipsnap1	chr11	protein_coding	nipsnap homolog 1
known_NIR_2807	chr11	4824103;4833171	4832901;4833368	+	4824103	4833368	cassetteExon	ENSMUST00000038570.9	known	0.00	1.0	307	0;2	307	n	0.00	1.0	253	0;2	253	n	0.01	0.5	60	0;1	60	n	0.00	1.0	375	1;1	375	n	0.00	0.0	377	0;0	377	n	0.03	2.5	76	2;3	76	y	0.01	3.0	334	4;2	334	y	0.01	1.0	102	0;2	102	n	0.01	2.5	336	0;5	336	n	0.00	2.0	471	0;4	471	n	0.00	1.5	325	0;3	325	n	0.01	2.0	395	0;4	395	n	ENSMUSG00000034285.16	Nipsnap1	chr11	protein_coding	nipsnap homolog 1
known_NIR_2808	chr11	4824103;4833253	4832901;4833368	+	4824103	4833368	cassetteExon	ENSMUST00000038570.9	known	0.03	9.0	307	0;18	307	n	0.02	6.0	253	0;12	253	n	0.17	12.5	60	0;25	60	n	0.02	8.5	375	1;16	375	n	0.06	25.0	377	0;50	377	n	0.11	9.5	76	2;17	76	y	0.06	20.5	334	4;37	334	y	0.13	15.5	102	0;31	102	n	0.03	9.5	336	0;19	336	n	0.02	12.0	471	0;24	471	n	0.02	8.0	325	0;16	325	n	0.04	15.0	395	0;30	395	n	ENSMUSG00000034285.16	Nipsnap1	chr11	protein_coding	nipsnap homolog 1
known_NIR_2809	chr11	4833253	4833368	+	4833171	4833368	A5SS	ENSMUST00000136552.8	known	0.90	18	2	18	2	y	0.86	12	2	12	2	y	0.96	25	1	25	1	n	0.94	16	1	16	1	n	1.00	50	0	50	0	n	0.85	17	3	17	3	y	0.95	37	2	37	2	y	0.94	31	2	31	2	y	0.79	19	5	19	5	y	0.86	24	4	24	4	y	0.84	16	3	16	3	y	0.88	30	4	30	4	y	ENSMUSG00000034285.16	Nipsnap1	chr11	protein_coding	nipsnap homolog 1
known_NIR_2810	chr11	4834116	4839097	+	4834116;4838950	4838880;4839097	ES	ENSMUST00000038570.9	known	0.02	8	477.0	8	503;451	y	0.01	4	392.5	4	423;362	y	0.00	0	132.5	0	155;110	n	0.02	11	515.0	11	579;451	y	0.01	4	569.5	4	601;538	y	0.02	2	115.5	2	122;109	y	0.01	8	537.5	8	555;520	y	0.02	5	210.0	5	234;186	y	0.01	5	486.5	5	535;438	y	0.02	14	761.0	14	829;693	y	0.01	6	525.0	6	571;479	y	0.02	15	663.5	15	689;638	y	ENSMUSG00000034285.16	Nipsnap1	chr11	protein_coding	nipsnap homolog 1
known_NIR_2811	chr11	48694062	48694231	+	48693247	48694231	A5SS	ENSMUST00000139959.8	known	0.00	3	1483	3	1483	y	0.00	2	1564	2	1564	y	0.00	0	2323	0	2323	n	0.00	0	1246	0	1246	n	0.00	0	1980	0	1980	n	0.00	0	1272	0	1272	n	0.00	0	2144	0	2144	n	0.00	0	1077	0	1077	n	0.00	0	1311	0	1311	n	0.00	0	1962	0	1962	n	0.00	0	1733	0	1733	n	0.00	0	1755	0	1755	n	ENSMUSG00000020372.16	Rack1	chr11	protein_coding	receptor for activated C kinase 1
known_NIR_2812	chr11	48728872	48729664	+	48717106	48729664	A5SS	ENSMUST00000109213.9	known	1.00	14	0	14	0	n	1.00	10	0	10	0	n	1.00	8	0	8	0	n	1.00	16	0	16	0	n	1.00	7	0	7	0	n	1.00	12	0	12	0	n	1.00	10	0	10	0	n	0.91	10	1	10	1	n	1.00	2	0	2	0	n	1.00	11	0	11	0	n	0.83	10	2	10	2	y	1.00	8	0	8	0	n	ENSMUSG00000040350.17	Trim7	chr11	protein_coding	tripartite motif-containing 7
known_NIR_2813	chr11	48757830	48761921	-	48757830;48759607	48759389;48761921	ES	ENSMUST00000049519.4	known	0.83	95	20.0	95	26;14	y	0.84	69	13.5	69	15;12	y	0.70	108	46.5	108	49;44	y	0.84	125	24.0	125	25;23	y	0.80	129	33.0	129	31;35	y	0.90	40	4.5	40	6;3	y	0.82	121	26.5	121	28;25	y	0.79	42	11.5	42	9;14	y	0.79	76	20.0	76	23;17	y	0.85	119	21.0	119	25;17	y	0.83	81	16.5	81	17;16	y	0.82	104	22.5	104	22;23	y	ENSMUSG00000046879.8	Irgm1	chr11	protein_coding	immunity-related GTPase family M member 1
known_NIR_2814	chr11	48977971	48986216	+	48977971	49008448	A3SS	ENSMUST00000056759.11	known	0.96	76	3	76	3	y	1.00	61	0	61	0	n	1.00	120	0	120	0	n	0.99	83	1	83	1	n	0.98	119	2	119	2	y	0.93	27	2	27	2	y	1.00	63	0	63	0	n	1.00	44	0	44	0	n	0.98	93	2	93	2	y	1.00	95	0	95	0	n	1.00	75	0	75	0	n	1.00	104	0	104	0	n	ENSMUSG00000040328.17	Olfr56	chr11	protein_coding	olfactory receptor 56
known_NIR_2815	chr11	49094365	49103522	+	49095302	49103522	5pMXE	ENSMUST00000136539.2	known	1.00	3	0	3	0	n	-	-	-	-	-	-	0.90	9	1	9	1	n	0.60	3	2	3	2	n	0.75	9	3	9	3	y	1.00	6	0	6	0	n	0.86	12	2	12	2	y	0.88	7	1	7	1	n	0.88	7	1	7	1	n	0.60	6	4	6	4	y	1.00	2	0	2	0	n	1.00	3	0	3	0	n	ENSMUSG00000046311.14	Zfp62	chr11	protein_coding	zinc finger protein 62
known_NIR_2816	chr11	49104469	49105891	+	49105481	49105891	A5SS&ES	ENSMUST00000180016.2	known	0.78	7	2	7	2	n	0.50	2	2	2	2	n	0.79	19	5	19	5	y	0.71	15	6	15	6	y	0.63	12	7	12	7	y	0.64	9	5	9	5	y	0.89	17	2	17	2	y	0.88	7	1	7	1	n	0.82	9	2	9	2	y	1.00	10	0	10	0	n	1.00	7	0	7	0	n	0.92	12	1	12	1	n	ENSMUSG00000046311.14	Zfp62	chr11	protein_coding	zinc finger protein 62
known_NIR_2817	chr11	49104469;49105481	49105050;49105891	+	49104469	49105891	cassetteExon	ENSMUST00000109198.8	known	0.22	2.0	7	2;2	7	y	0.43	1.5	2	1;2	2	n	0.12	2.5	19	0;5	19	n	0.19	3.5	15	1;6	15	n	0.23	3.5	12	0;7	12	n	0.25	3.0	9	1;5	9	n	0.06	1.0	17	0;2	17	n	0.07	0.5	7	0;1	7	n	0.10	1.0	9	0;2	9	n	0.00	0.0	10	0;0	10	n	0.12	1.0	7	2;0	7	n	0.04	0.5	12	0;1	12	n	ENSMUSG00000046311.14	Zfp62	chr11	protein_coding	zinc finger protein 62
known_NIR_2818	chr11	49104469;49105481	49105353;49105891	+	49104469	49105891	cassetteExon	ENSMUST00000109198.8	known	0.12	1.0	7	0;2	7	n	0.33	1.0	2	0;2	2	n	0.12	2.5	19	0;5	19	n	0.17	3.0	15	0;6	15	n	0.23	3.5	12	0;7	12	n	0.22	2.5	9	0;5	9	n	0.13	2.5	17	3;2	17	y	0.07	0.5	7	0;1	7	n	0.10	1.0	9	0;2	9	n	0.00	0.0	10	0;0	10	n	0.07	0.5	7	1;0	7	n	0.08	1.0	12	1;1	12	n	ENSMUSG00000046311.14	Zfp62	chr11	protein_coding	zinc finger protein 62
known_NIR_2819	chr11	49104469;49105481	49105382;49105891	+	49104469	49105891	cassetteExon	ENSMUST00000109198.8	known	0.12	1.0	7	0;2	7	n	0.33	1.0	2	0;2	2	n	0.12	2.5	19	0;5	19	n	0.23	4.5	15	3;6	15	y	0.27	4.5	12	2;7	12	y	0.22	2.5	9	0;5	9	n	0.08	1.5	17	1;2	17	n	0.22	2.0	7	3;1	7	n	0.10	1.0	9	0;2	9	n	0.05	0.5	10	1;0	10	n	0.00	0.0	7	0;0	7	n	0.04	0.5	12	0;1	12	n	ENSMUSG00000046311.14	Zfp62	chr11	protein_coding	zinc finger protein 62
known_NIR_2820	chr11	49135282	49136020	+	49135166	49136020	A5SS	ENSMUST00000167400.8	known	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.07	1	13	1	13	n	0.00	0	3	0	3	n	0.09	1	10	1	10	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.13	2	13	2	13	y	ENSMUSG00000020346.17	Mgat1	chr11	protein_coding	mannoside acetylglucosaminyltransferase 1
known_NIR_2821	chr11	49136444	49151398	+	49136444;49142501	49142377;49151398	ES	ENSMUST00000167400.8	known	0.22	15	54.5	15	38;71	y	0.24	13	40.5	13	29;52	y	0.24	16	52.0	16	41;63	y	0.15	11	61.0	11	51;71	y	0.25	28	86.0	28	63;109	y	0.32	17	36.0	17	16;56	y	0.33	29	60.0	29	43;77	y	0.19	10	44.0	10	32;56	y	0.19	14	58.5	14	45;72	y	0.18	17	79.5	17	56;103	y	0.21	18	67.5	18	36;99	y	0.19	14	60.0	14	42;78	y	ENSMUSG00000020346.17	Mgat1	chr11	protein_coding	mannoside acetylglucosaminyltransferase 1
known_NIR_2822	chr11	49141482	49142377	+	49136444	49142377	A5SS	ENSMUST00000167400.8	known	0.28	15	38	15	38	y	0.03	1	29	1	29	n	0.16	8	41	8	41	y	0.14	8	51	8	51	y	0.12	9	63	9	63	y	0.16	3	16	3	16	y	0.31	19	43	19	43	y	0.18	7	32	7	32	y	0.27	17	45	17	45	y	0.22	16	56	16	56	y	0.31	16	36	16	36	y	0.29	17	42	17	42	y	ENSMUSG00000020346.17	Mgat1	chr11	protein_coding	mannoside acetylglucosaminyltransferase 1
known_NIR_2823	chr11	49142501	49148614	+	49142501	49151398	A3SS	ENSMUST00000167400.8	known	0.07	5	71	5	71	y	0.02	1	52	1	52	n	0.12	9	63	9	63	y	0.08	6	71	6	71	y	0.05	6	109	6	109	y	0.08	5	56	5	56	y	0.06	5	77	5	77	y	0.10	6	56	6	56	y	0.04	3	72	3	72	y	0.04	4	103	4	103	y	0.02	2	99	2	99	y	0.07	6	78	6	78	y	ENSMUSG00000020346.17	Mgat1	chr11	protein_coding	mannoside acetylglucosaminyltransferase 1
known_NIR_2824	chr11	49575982	49576090	-	49575982	49576075	A5SS	ENSMUST00000145353.8	known	0.67	10	5	10	5	y	0.67	8	4	8	4	y	0.63	26	15	26	15	y	0.68	23	11	23	11	y	0.74	28	10	28	10	y	0.59	16	11	16	11	y	0.62	24	15	24	15	y	0.78	31	9	31	9	y	0.43	9	12	9	12	y	0.64	35	20	35	20	y	0.92	23	2	23	2	y	0.69	20	9	20	9	y	ENSMUSG00000020362.14	Cnot6	chr11	protein_coding	CCR4-NOT transcription complex, subunit 6
known_NIR_2825	chr11	49745209;49745804	49745564;49754371	+	49745209	49754371	cassetteExon	ENSMUST00000109179.9	known	0.07	3.5	46	2;5	46	y	0.08	3.0	33	5;1	33	n	0.06	3.5	60	1;6	60	n	0.05	2.5	48	2;3	48	y	0.02	1.5	66	3;0	66	n	0.09	3.0	29	5;1	29	n	0.08	5.0	60	2;8	60	y	0.08	3.5	38	3;4	38	y	0.04	2.0	55	1;3	55	n	0.05	4.0	74	4;4	74	y	0.07	3.5	45	3;4	45	y	0.05	2.5	50	4;1	50	n	ENSMUSG00000020366.19	Mapk9	chr11	protein_coding	mitogen-activated protein kinase 9
known_NIR_2826	chr11	49757868	49760039	+	49757868	49759999	A3SS	ENSMUST00000109179.9	known	0.07	3	39	3	39	y	0.03	1	29	1	29	n	0.06	4	66	4	66	y	0.04	3	71	3	71	y	0.00	0	95	0	95	n	0.05	2	37	2	37	y	0.06	4	67	4	67	y	0.02	1	49	1	49	n	0.10	4	38	4	38	y	0.07	6	75	6	75	y	0.08	5	55	5	55	y	0.00	0	85	0	85	n	ENSMUSG00000020366.19	Mapk9	chr11	protein_coding	mitogen-activated protein kinase 9
known_NIR_2827	chr11	49763726	49764663	+	49763726	49765091	A3SS	ENSMUST00000144857.8	known	0.04	3	69	3	69	y	0.02	1	52	1	52	n	0.12	7	50	7	50	y	0.03	3	87	3	87	y	0.11	12	93	12	93	y	0.09	5	51	5	51	y	0.07	6	77	6	77	y	0.07	4	53	4	53	y	0.02	2	88	2	88	y	0.04	4	86	4	86	y	0.06	3	48	3	48	y	0.08	9	101	9	101	y	ENSMUSG00000020366.19	Mapk9	chr11	protein_coding	mitogen-activated protein kinase 9
known_NIR_2828	chr11	49763726;49765162	49765091;49769058	+	49763726;49764734	49764663;49769058	MXE	ENSMUST00000109179.9	known	0.94	67.5	4.5	69;66	3;6	y	0.99	51.0	0.5	52;50	1;0	n	0.86	60.5	9.5	50;71	7;12	y	0.97	95.0	3.0	87;103	3;3	y	0.85	86.0	15.5	93;79	12;19	y	0.88	48.5	6.5	51;46	5;8	y	0.91	83.5	8.5	77;90	6;11	y	0.92	64.0	5.5	53;75	4;7	y	0.97	95.5	3.0	88;103	2;4	y	0.93	88.0	6.5	86;90	4;9	y	0.92	59.0	5.0	48;70	3;7	y	0.95	105.5	6.0	101;110	9;3	y	ENSMUSG00000020366.19	Mapk9	chr11	protein_coding	mitogen-activated protein kinase 9
known_NIR_2829	chr11	49773026	49773974	+	49773026	49773969	A3SS	ENSMUST00000109179.9	known	0.71	76	31	76	31	y	0.74	84	30	84	30	y	0.78	63	18	63	18	y	0.79	81	21	81	21	y	0.84	115	22	115	22	y	0.69	51	23	51	23	y	0.76	109	35	109	35	y	0.79	52	14	52	14	y	0.71	63	26	63	26	y	0.77	119	35	119	35	y	0.77	80	24	80	24	y	0.80	99	25	99	25	y	ENSMUSG00000020366.19	Mapk9	chr11	protein_coding	mitogen-activated protein kinase 9
known_NIR_2830	chr11	49986807	49990073	+	49986807	50009872	A3SS	ENSMUST00000238748.2	known	0.90	223	24	223	24	y	0.95	269	14	269	14	y	0.93	256	20	256	20	y	0.94	183	12	183	12	y	0.93	240	19	240	19	y	0.96	198	9	198	9	y	0.93	327	26	327	26	y	0.90	167	19	167	19	y	0.96	207	8	207	8	y	0.94	322	20	322	20	y	0.93	270	20	270	20	y	0.95	283	14	283	14	y	ENSMUSG00000020376.18	Rnf130	chr11	protein_coding	ring finger protein 130
known_NIR_2831	chr11	49986807	50009872	+	49986807	49995376	3pMXE	ENSMUST00000054684.14	known	0.34	24	47	24	47	y	0.19	14	60	14	60	y	0.27	20	54	20	54	y	0.22	12	42	12	42	y	0.22	19	68	19	68	y	0.26	9	26	9	26	y	0.23	26	89	26	89	y	0.30	19	45	19	45	y	0.20	8	32	8	32	y	0.22	20	71	20	71	y	0.28	20	52	20	52	y	0.16	14	71	14	71	y	ENSMUSG00000020376.18	Rnf130	chr11	protein_coding	ring finger protein 130
known_NIR_2832	chr11	49986807;49990166	49990073;49995376	+	49986807	49995376	cassetteExon	ENSMUST00000054684.14	known	0.83	223.0	47	223;223	47	y	0.82	281.0	60	269;293	60	y	0.83	261.5	54	256;267	54	y	0.81	180.5	42	183;178	42	y	0.79	250.0	68	240;260	68	y	0.88	183.0	26	198;168	26	y	0.78	318.0	89	327;309	89	y	0.78	163.5	45	167;160	45	y	0.86	200.0	32	207;193	32	y	0.82	321.0	71	322;320	71	y	0.83	255.0	52	270;240	52	y	0.80	293.0	71	283;303	71	y	ENSMUSG00000020376.18	Rnf130	chr11	protein_coding	ring finger protein 130
known_NIR_2833	chr11	50022383;50023014	50022689;50026652	+	50022383	50026652	cassetteExon	ENSMUST00000093138.13	known	0.00	0.0	31	0;0	31	n	0.00	0.0	15	0;0	15	n	0.07	2.0	27	2;2	27	y	0.04	1.0	23	1;1	23	n	0.01	0.5	40	1;0	40	n	0.14	2.5	15	5;0	15	n	0.01	0.5	51	0;1	51	n	0.02	0.5	26	1;0	26	n	0.02	0.5	29	1;0	29	n	0.01	0.5	38	1;0	38	n	0.01	0.5	34	0;1	34	n	0.03	1.0	37	1;1	37	n	ENSMUSG00000036644.16	Tbc1d9b	chr11	protein_coding	TBC1 domain family, member 9B
known_NIR_2834	chr11	50054723;50055039	50054989;50058996	+	50054723	50058996	cassetteExon	ENSMUST00000093138.13	known	0.11	7.0	55	9;5	55	y	0.07	3.0	42	4;2	42	y	0.08	4.0	44	6;2	44	y	0.14	11.0	66	10;12	66	y	0.06	4.5	66	5;4	66	y	0.09	3.0	31	4;2	31	y	0.15	11.5	63	14;9	63	y	0.17	8.5	41	7;10	41	y	0.12	6.5	47	5;8	47	y	0.15	13.5	79	14;13	79	y	0.13	7.5	52	8;7	52	y	0.07	6.0	85	7;5	85	y	ENSMUSG00000036644.16	Tbc1d9b	chr11	protein_coding	TBC1 domain family, member 9B
known_NIR_2835	chr11	50067713	50073319	+	50067713	50068503	3pMXE	ENSMUST00000143480.2	known	0.79	11	3	11	3	y	0.79	15	4	15	4	y	0.67	6	3	6	3	n	1.00	14	0	14	0	n	1.00	23	0	23	0	n	1.00	3	0	3	0	n	0.91	31	3	31	3	y	1.00	11	0	11	0	n	0.96	25	1	25	1	n	0.86	25	4	25	4	y	0.85	22	4	22	4	y	0.90	19	2	19	2	y	ENSMUSG00000020381.11	Mrnip	chr11	protein_coding	MRN complex interacting protein
known_NIR_2836	chr11	50091774	50093340	-	50091774	50093226	A5SS	ENSMUST00000102774.11	known	0.34	355	681	355	681	y	0.40	416	625	416	625	y	0.31	431	958	431	958	y	0.39	446	684	446	684	y	0.38	523	867	523	867	y	0.28	174	442	174	442	y	0.36	557	1003	557	1003	y	0.32	210	443	210	443	y	0.37	377	636	377	636	y	0.41	575	822	575	822	y	0.37	470	791	470	791	y	0.37	521	894	521	894	y	ENSMUSG00000015837.16	Sqstm1	chr11	protein_coding	sequestosome 1
known_NIR_2837	chr11	50116566	50121507	+	50101857	50121507	A5SS	ENSMUST00000147468.8	known	1.00	32	0	32	0	n	0.96	43	2	43	2	y	1.00	38	0	38	0	n	1.00	45	0	45	0	n	1.00	57	0	57	0	n	1.00	22	0	22	0	n	1.00	58	0	58	0	n	1.00	23	0	23	0	n	1.00	27	0	27	0	n	1.00	44	0	44	0	n	1.00	35	0	35	0	n	1.00	52	0	52	0	n	ENSMUSG00000036620.15	Mgat4b	chr11	protein_coding	mannoside acetylglucosaminyltransferase 4, isoenzyme B
known_NIR_2838	chr11	5011817	5012155	-	5006689	5012155	A3SS	ENSMUST00000122886.8	known	1.00	35	0	35	0	n	1.00	48	0	48	0	n	0.98	79	2	79	2	y	1.00	28	0	28	0	n	0.98	58	1	58	1	n	1.00	50	0	50	0	n	0.87	47	7	47	7	y	0.93	26	2	26	2	y	0.97	30	1	30	1	n	1.00	43	0	43	0	n	0.97	31	1	31	1	n	1.00	45	0	45	0	n	ENSMUSG00000034201.14	Gas2l1	chr11	protein_coding	growth arrest-specific 2 like 1
known_NIR_2839	chr11	5012326;5012511	5012415;5012594	-	5012326	5012594	cassetteExon	ENSMUST00000122886.8	known	1.00	55.0	0	56;54	0	n	1.00	55.0	0	49;61	0	n	1.00	105.5	0	105;106	0	n	1.00	51.0	0	44;58	0	n	1.00	91.5	0	92;91	0	n	1.00	51.5	0	58;45	0	n	0.97	71.0	2	64;78	2	y	1.00	45.0	0	37;53	0	n	1.00	36.0	0	39;33	0	n	1.00	74.0	0	79;69	0	n	0.98	51.0	1	53;49	1	n	1.00	61.5	0	51;72	0	n	ENSMUSG00000034201.14	Gas2l1	chr11	protein_coding	growth arrest-specific 2 like 1
known_NIR_2840	chr11	5014478	5015215	-	5014478	5014837	5pMXE	ENSMUST00000156196.2	known	0.39	9	14	9	14	y	0.62	10	6	10	6	y	0.38	23	37	23	37	y	0.50	12	12	12	12	y	0.38	15	25	15	25	y	0.24	9	28	9	28	y	0.47	17	19	17	19	y	0.32	8	17	8	17	y	0.25	4	12	4	12	y	0.34	10	19	10	19	y	0.31	5	11	5	11	y	0.16	4	21	4	21	y	ENSMUSG00000034201.14	Gas2l1	chr11	protein_coding	growth arrest-specific 2 like 1
known_NIR_2841	chr11	5014478	5015215	-	5015094	5015215	A3SS	ENSMUST00000151936.2	known	0.47	9	10	9	10	y	0.50	10	10	10	10	y	0.43	23	31	23	31	y	0.32	12	26	12	26	y	0.29	15	36	15	36	y	0.29	9	22	9	22	y	0.57	17	13	17	13	y	0.24	8	25	8	25	y	0.19	4	17	4	17	y	0.27	10	27	10	27	y	0.24	5	16	5	16	y	0.13	4	26	4	26	y	ENSMUSG00000034201.14	Gas2l1	chr11	protein_coding	growth arrest-specific 2 like 1
known_NIR_2842	chr11	5014478;5015015	5014837;5015215	-	5014478	5015215	cassetteExon	ENSMUST00000122886.8	known	0.45	7.5	9	14;1	9	n	0.23	3.0	10	6;0	10	n	0.49	22.0	23	37;7	23	y	0.33	6.0	12	12;0	12	n	0.49	14.5	15	25;4	15	y	0.64	16.0	9	28;4	9	y	0.36	9.5	17	19;0	17	n	0.52	8.5	8	17;0	8	n	0.62	6.5	4	12;1	4	n	0.51	10.5	10	19;2	10	y	0.52	5.5	5	11;0	5	n	0.73	11.0	4	21;1	4	n	ENSMUSG00000034201.14	Gas2l1	chr11	protein_coding	growth arrest-specific 2 like 1
known_NIR_2843	chr11	5014478;5015094	5014837;5015215	-	5014478	5015215	cassetteExon	ENSMUST00000122886.8	known	0.57	12.0	9	14;10	9	y	0.44	8.0	10	6;10	10	y	0.60	34.0	23	37;31	23	y	0.61	19.0	12	12;26	12	y	0.67	30.5	15	25;36	15	y	0.74	25.0	9	28;22	9	y	0.48	16.0	17	19;13	17	y	0.72	21.0	8	17;25	8	y	0.78	14.5	4	12;17	4	y	0.70	23.0	10	19;27	10	y	0.73	13.5	5	11;16	5	y	0.85	23.5	4	21;26	4	y	ENSMUSG00000034201.14	Gas2l1	chr11	protein_coding	growth arrest-specific 2 like 1
known_NIR_2844	chr11	5015015	5015215	-	5015094	5015215	A3SS	ENSMUST00000037146.10	known	0.09	1	10	1	10	n	0.00	0	10	0	10	n	0.18	7	31	7	31	y	0.00	0	26	0	26	n	0.10	4	36	4	36	y	0.15	4	22	4	22	y	0.00	0	13	0	13	n	0.00	0	25	0	25	n	0.06	1	17	1	17	n	0.07	2	27	2	27	y	0.00	0	16	0	16	n	0.04	1	26	1	26	n	ENSMUSG00000034201.14	Gas2l1	chr11	protein_coding	growth arrest-specific 2 like 1
known_NIR_2845	chr11	50202611	50216320	-	50202607	50216320	A3SS	ENSMUST00000179865.8	known	0.90	198	22	198	22	y	0.93	140	10	140	10	y	0.93	419	32	419	32	y	0.91	294	29	294	29	y	0.94	451	28	451	28	y	0.95	232	12	232	12	y	0.91	250	24	250	24	y	0.90	283	32	283	32	y	0.93	181	14	181	14	y	0.94	310	21	310	21	y	0.92	234	20	234	20	y	0.89	353	42	353	42	y	ENSMUSG00000020368.16	Canx	chr11	protein_coding	calnexin
known_NIR_2846	chr11	50268629	50269118	+	50268267	50269118	A5SS	ENSMUST00000109142.8	known	0.95	19	1	19	1	n	0.94	16	1	16	1	n	1.00	45	0	45	0	n	0.88	28	4	28	4	y	0.91	31	3	31	3	y	1.00	9	0	9	0	n	1.00	24	0	24	0	n	1.00	14	0	14	0	n	0.95	19	1	19	1	n	1.00	28	0	28	0	n	1.00	17	0	17	0	n	1.00	27	0	27	0	n	ENSMUSG00000007850.17	Hnrnph1	chr11	protein_coding	heterogeneous nuclear ribonucleoprotein H1
known_NIR_2847	chr11	50270791	50271653	+	50270791	50272286	A3SS	ENSMUST00000109142.8	known	0.10	5	44	5	44	y	0.00	0	33	0	33	n	0.02	2	96	2	96	y	0.00	0	58	0	58	n	0.00	0	78	0	78	n	0.00	0	32	0	32	n	0.05	4	69	4	69	y	0.00	0	54	0	54	n	0.00	0	41	0	41	n	0.00	0	49	0	49	n	0.00	0	25	0	25	n	0.10	5	47	5	47	y	ENSMUSG00000007850.17	Hnrnph1	chr11	protein_coding	heterogeneous nuclear ribonucleoprotein H1
known_NIR_2848	chr11	50270791	50271653	+	50270791	50273364	A3SS	ENSMUST00000150153.8	known	0.38	5	8	5	8	y	0.00	0	17	0	17	n	0.14	2	12	2	12	y	0.00	0	9	0	9	n	0.00	0	18	0	18	n	0.00	0	8	0	8	n	0.22	4	14	4	14	y	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.00	0	3	0	3	n	0.33	5	10	5	10	y	ENSMUSG00000007850.17	Hnrnph1	chr11	protein_coding	heterogeneous nuclear ribonucleoprotein H1
known_NIR_2849	chr11	50270791	50273364	+	50270791	50272286	3pMXE	ENSMUST00000133435.2	known	0.15	8	44	8	44	y	0.34	17	33	17	33	y	0.11	12	96	12	96	y	0.13	9	58	9	58	y	0.19	18	78	18	78	y	0.20	8	32	8	32	y	0.17	14	69	14	69	y	0.21	14	54	14	54	y	0.21	11	41	11	41	y	0.25	16	49	16	49	y	0.11	3	25	3	25	y	0.18	10	47	10	47	y	ENSMUSG00000007850.17	Hnrnph1	chr11	protein_coding	heterogeneous nuclear ribonucleoprotein H1
known_NIR_2850	chr11	50270791	50273364	+	50270791;50272424	50272286;50273364	ES	ENSMUST00000109142.8	known	0.18	8	36.0	8	44;28	y	0.34	17	32.5	17	33;32	y	0.11	12	98.5	12	96;101	y	0.13	9	58.0	9	58;58	y	0.19	18	77.5	18	78;77	y	0.19	8	33.5	8	32;35	y	0.20	14	56.5	14	69;44	y	0.24	14	45.5	14	54;37	y	0.22	11	38.5	11	41;36	y	0.26	16	45.0	16	49;41	y	0.08	3	33.5	3	25;42	y	0.20	10	40.5	10	47;34	y	ENSMUSG00000007850.17	Hnrnph1	chr11	protein_coding	heterogeneous nuclear ribonucleoprotein H1
known_NIR_2851	chr11	50274141	50274658	+	50274141	50274507	A3SS	ENSMUST00000141668.8	known	0.01	2	155	2	155	y	0.00	0	149	0	149	n	0.00	0	271	0	271	n	0.00	0	144	0	144	n	0.00	0	218	0	218	n	0.00	0	91	0	91	n	0.00	0	185	0	185	n	0.00	0	142	0	142	n	0.00	0	150	0	150	n	0.00	0	133	0	133	n	0.00	0	128	0	128	n	0.00	0	158	0	158	n	ENSMUSG00000007850.17	Hnrnph1	chr11	protein_coding	heterogeneous nuclear ribonucleoprotein H1
known_NIR_2852	chr11	50274141	50274658	+	50274141;50274566	50274507;50274658	ES	ENSMUST00000109142.8	known	0.01	2	136.0	2	155;117	y	0.00	0	136.0	0	149;123	n	0.00	0	254.0	0	271;237	n	0.00	0	130.0	0	144;116	n	0.00	0	206.0	0	218;194	n	0.00	0	84.5	0	91;78	n	0.00	0	168.0	0	185;151	n	0.00	0	114.0	0	142;86	n	0.00	0	112.0	0	150;74	n	0.00	0	125.0	0	133;117	n	0.00	0	116.0	0	128;104	n	0.00	0	133.0	0	158;108	n	ENSMUSG00000007850.17	Hnrnph1	chr11	protein_coding	heterogeneous nuclear ribonucleoprotein H1
known_NIR_2853	chr11	50274141;50274717	50274658;50275471	+	50274141;50274596	50274507;50275471	MXE	ENSMUST00000156642.8	known	0.03	3.0	85.5	2;4	155;16	y	0.09	8.5	81.0	0;17	149;13	n	0.09	14.0	142.0	0;28	271;13	n	0.04	3.0	77.0	0;6	144;10	n	0.06	7.0	119.5	0;14	218;21	n	0.14	8.0	48.5	0;16	91;6	n	0.07	7.0	99.5	0;14	185;14	n	0.03	2.5	73.0	0;5	142;4	n	0.05	4.0	78.5	0;8	150;7	n	0.03	2.0	70.0	0;4	133;7	n	0.01	1.0	68.5	0;2	128;9	n	0.02	2.0	82.0	0;4	158;6	n	ENSMUSG00000007850.17	Hnrnph1	chr11	protein_coding	heterogeneous nuclear ribonucleoprotein H1
known_NIR_2854	chr11	50274141;50274747	50274658;50275471	+	50274141;50274596	50274507;50275471	MXE	ENSMUST00000156642.8	known	0.43	65.5	85.5	2;129	155;16	y	0.42	57.5	81.0	0;115	149;13	n	0.40	93.5	142.0	0;187	271;13	n	0.45	62.5	77.0	0;125	144;10	n	0.40	79.5	119.5	0;159	218;21	n	0.45	39.0	48.5	0;78	91;6	n	0.46	84.5	99.5	0;169	185;14	n	0.35	39.5	73.0	0;79	142;4	n	0.35	42.5	78.5	0;85	150;7	n	0.50	70.5	70.0	0;141	133;7	n	0.43	51.0	68.5	0;102	128;9	n	0.42	59.5	82.0	0;119	158;6	n	ENSMUSG00000007850.17	Hnrnph1	chr11	protein_coding	heterogeneous nuclear ribonucleoprotein H1
known_NIR_2855	chr11	50274596	50275471	+	50274717	50275471	5pMXE	ENSMUST00000140056.2	known	0.80	16	4	16	4	y	0.43	13	17	13	17	y	0.32	13	28	13	28	y	0.62	10	6	10	6	y	0.60	21	14	21	14	y	0.27	6	16	6	16	y	0.50	14	14	14	14	y	0.44	4	5	4	5	n	0.47	7	8	7	8	y	0.64	7	4	7	4	y	0.82	9	2	9	2	y	0.60	6	4	6	4	y	ENSMUSG00000007850.17	Hnrnph1	chr11	protein_coding	heterogeneous nuclear ribonucleoprotein H1
known_NIR_2856	chr11	50274596	50275471	+	50274747	50275471	A5SS&ES	ENSMUST00000109142.8	known	0.11	16	129	16	129	y	0.10	13	115	13	115	y	0.07	13	187	13	187	y	0.07	10	125	10	125	y	0.12	21	159	21	159	y	0.07	6	78	6	78	y	0.08	14	169	14	169	y	0.05	4	79	4	79	y	0.08	7	85	7	85	y	0.05	7	141	7	141	y	0.08	9	102	9	102	y	0.05	6	119	6	119	y	ENSMUSG00000007850.17	Hnrnph1	chr11	protein_coding	heterogeneous nuclear ribonucleoprotein H1
known_NIR_2857	chr11	50274717	50275471	+	50274747	50275471	A5SS	ENSMUST00000109142.8	known	0.03	4	129	4	129	y	0.13	17	115	17	115	y	0.13	28	187	28	187	y	0.05	6	125	6	125	y	0.08	14	159	14	159	y	0.17	16	78	16	78	y	0.08	14	169	14	169	y	0.06	5	79	5	79	y	0.09	8	85	8	85	y	0.03	4	141	4	141	y	0.02	2	102	2	102	y	0.03	4	119	4	119	y	ENSMUSG00000007850.17	Hnrnph1	chr11	protein_coding	heterogeneous nuclear ribonucleoprotein H1
known_NIR_2858	chr11	50275563	50276604	+	50275563;50276017	50275968;50276604	ES	ENSMUST00000109142.8	known	0.13	24	162.5	24	148;177	y	0.10	21	182.5	21	184;181	y	0.09	24	247.0	24	243;251	y	0.11	21	162.0	21	153;171	y	0.06	16	240.5	16	242;239	y	0.17	20	99.0	20	90;108	y	0.09	21	212.0	21	197;227	y	0.18	24	107.0	24	111;103	y	0.09	13	133.5	13	137;130	y	0.10	24	206.5	24	193;220	y	0.09	12	128.5	12	122;135	y	0.13	26	169.5	26	161;178	y	ENSMUSG00000007850.17	Hnrnph1	chr11	protein_coding	heterogeneous nuclear ribonucleoprotein H1
known_NIR_2859	chr11	50275563	50276604	+	50276017	50276604	5pMXE	ENSMUST00000151537.2	known	0.12	24	177	24	177	y	0.10	21	181	21	181	y	0.09	24	251	24	251	y	0.11	21	171	21	171	y	0.06	16	239	16	239	y	0.16	20	108	20	108	y	0.08	21	227	21	227	y	0.19	24	103	24	103	y	0.09	13	130	13	130	y	0.10	24	220	24	220	y	0.08	12	135	12	135	y	0.13	26	178	26	178	y	ENSMUSG00000007850.17	Hnrnph1	chr11	protein_coding	heterogeneous nuclear ribonucleoprotein H1
known_NIR_2860	chr11	5028952	5032253	-	5028952	5029485	5pMXE	ENSMUST00000139886.2	known	0.04	4	86	4	86	y	0.02	2	117	2	117	y	0.01	2	139	2	139	y	0.03	3	111	3	111	y	0.02	3	155	3	155	y	0.00	0	74	0	74	n	0.04	5	123	5	123	y	0.03	2	58	2	58	y	0.03	3	115	3	115	y	0.03	5	143	5	143	y	0.03	4	141	4	141	y	0.02	2	122	2	122	y	ENSMUSG00000009079.17	Ewsr1	chr11	protein_coding	Ewing sarcoma breakpoint region 1
known_NIR_2861	chr11	5028952	5032253	-	5028952;5029519	5029485;5032253	ES	ENSMUST00000079949.13	known	0.06	4	59.0	4	86;32	y	0.03	2	76.5	2	117;36	y	0.02	2	97.0	2	139;55	y	0.04	3	76.5	3	111;42	y	0.03	3	108.5	3	155;62	y	0.00	0	51.0	0	74;28	n	0.06	5	83.0	5	123;43	y	0.05	2	37.5	2	58;17	y	0.04	3	79.0	3	115;43	y	0.05	5	95.0	5	143;47	y	0.04	4	89.0	4	141;37	y	0.02	2	87.0	2	122;52	y	ENSMUSG00000009079.17	Ewsr1	chr11	protein_coding	Ewing sarcoma breakpoint region 1
known_NIR_2862	chr11	5049272	5049748	+	5049566	5049748	A5SS	ENSMUST00000101610.10	known	0.12	3	21	3	21	y	0.04	1	27	1	27	n	0.00	0	27	0	27	n	0.03	1	33	1	33	n	0.00	0	47	0	47	n	0.00	0	19	0	19	n	0.00	0	37	0	37	n	0.00	0	22	0	22	n	0.00	0	27	0	27	n	0.00	0	46	0	46	n	0.02	1	42	1	42	n	0.00	0	35	0	35	n	ENSMUSG00000034175.14	Rhbdd3	chr11	protein_coding	rhomboid domain containing 3
known_NIR_2863	chr11	5049477	5049748	+	5049566	5049748	A5SS	ENSMUST00000101610.10	known	0.00	0	21	0	21	n	0.00	0	27	0	27	n	0.07	2	27	2	27	y	0.13	5	33	5	33	y	0.11	6	47	6	47	y	0.14	3	19	3	19	y	0.12	5	37	5	37	y	0.08	2	22	2	22	y	0.04	1	27	1	27	n	0.08	4	46	4	46	y	0.00	0	42	0	42	n	0.03	1	35	1	35	n	ENSMUSG00000034175.14	Rhbdd3	chr11	protein_coding	rhomboid domain containing 3
known_NIR_2864	chr11	5049898	5050385	+	5049898	5050397	A3SS	ENSMUST00000101610.10	known	0.06	2	30	2	30	y	0.16	5	26	5	26	y	0.15	6	33	6	33	y	0.09	6	60	6	60	y	0.06	5	77	5	77	y	0.16	4	21	4	21	y	0.10	7	62	7	62	y	0.00	0	24	0	24	n	0.08	5	57	5	57	y	0.02	2	79	2	79	y	0.08	4	49	4	49	y	0.12	6	44	6	44	y	ENSMUSG00000034175.14	Rhbdd3	chr11	protein_coding	rhomboid domain containing 3
known_NIR_2865	chr11	5050226	5050397	+	5049898	5050397	A5SS	ENSMUST00000101610.10	known	0.03	1	30	1	30	n	0.00	0	26	0	26	n	0.00	0	33	0	33	n	0.05	3	60	3	60	y	0.00	0	77	0	77	n	0.12	3	21	3	21	y	0.00	0	62	0	62	n	0.08	2	24	2	24	y	0.03	2	57	2	57	y	0.00	0	79	0	79	n	0.00	0	49	0	49	n	0.04	2	44	2	44	y	ENSMUSG00000034175.14	Rhbdd3	chr11	protein_coding	rhomboid domain containing 3
known_NIR_2866	chr11	5054404	5055181	+	5054404	5055185	A3SS	ENSMUST00000101610.10	known	0.11	4	34	4	34	y	0.05	2	38	2	38	y	0.04	1	24	1	24	n	0.11	3	24	3	24	y	0.05	2	42	2	42	y	0.21	4	15	4	15	y	0.06	3	44	3	44	y	0.00	0	16	0	16	n	0.07	3	38	3	38	y	0.19	9	38	9	38	y	0.05	3	54	3	54	y	0.05	2	41	2	41	y	ENSMUSG00000034175.14	Rhbdd3	chr11	protein_coding	rhomboid domain containing 3
known_NIR_2867	chr11	5055313	5055433	+	5055347	5055433	A5SS	ENSMUST00000101610.10	known	0.07	4	51	4	51	y	0.15	9	53	9	53	y	0.10	4	38	4	38	y	0.18	10	45	10	45	y	0.05	3	56	3	56	y	0.19	5	22	5	22	y	0.10	8	74	8	74	y	0.08	3	34	3	34	y	0.06	2	32	2	32	y	0.11	8	66	8	66	y	0.09	6	59	6	59	y	0.09	7	74	7	74	y	ENSMUSG00000034175.14	Rhbdd3	chr11	protein_coding	rhomboid domain containing 3
known_NIR_2868	chr11	50801352	50801533	-	50801352	50801577	A5SS	ENSMUST00000109129.8	known	0.74	14	5	14	5	y	0.50	12	12	12	12	y	0.43	3	4	3	4	n	0.67	12	6	12	6	y	0.76	16	5	16	5	y	0.60	3	2	3	2	n	0.61	11	7	11	7	y	0.38	3	5	3	5	n	0.38	6	10	6	10	y	0.48	12	13	12	13	y	0.57	12	9	12	9	y	0.60	12	8	12	8	y	ENSMUSG00000049321.18	Zfp2	chr11	protein_coding	zinc finger protein 2
known_NIR_2869	chr11	50801355	50801533	-	50801352	50801533	A3SS	ENSMUST00000116378.8	known	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.14	2	12	2	12	y	0.06	1	16	1	16	n	0.50	3	3	3	3	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	ENSMUSG00000049321.18	Zfp2	chr11	protein_coding	zinc finger protein 2
known_NIR_2870	chr11	50801355	50801577	-	50801352	50801577	A3SS	ENSMUST00000109129.8	known	0.50	5	5	5	5	y	0.29	5	12	5	12	y	0.00	0	4	0	4	n	0.40	4	6	4	6	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.22	2	7	2	7	n	0.17	1	5	1	5	n	0.09	1	10	1	10	n	0.24	4	13	4	13	y	0.36	5	9	5	9	y	0.43	6	8	6	8	y	ENSMUSG00000049321.18	Zfp2	chr11	protein_coding	zinc finger protein 2
known_NIR_2871	chr11	50803231	50806936	-	50803228	50806936	A3SS	ENSMUST00000116378.8	known	0.50	2	2	2	2	n	0.50	4	4	4	4	n	0.50	2	2	2	2	n	0.29	2	5	2	5	n	0.67	4	2	4	2	n	0.00	0	1	0	1	n	0.44	8	10	8	10	y	0.50	1	1	1	1	n	0.75	3	1	3	1	n	1.00	11	0	11	0	n	0.44	4	5	4	5	n	0.50	4	4	4	4	n	ENSMUSG00000049321.18	Zfp2	chr11	protein_coding	zinc finger protein 2
known_NIR_2872	chr11	50820330	50821044	-	50820330	50821728	A5SS	ENSMUST00000109124.10	known	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	19	0	19	n	0.00	0	3	0	3	n	0.00	0	19	0	19	n	0.00	0	6	0	6	n	0.15	2	11	2	11	y	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	ENSMUSG00000020335.14	Zfp354b	chr11	protein_coding	zinc finger protein 354B
known_NIR_2873	chr11	50951813	50952227	+	50951813	50952230	A3SS	ENSMUST00000102766.10	known	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.15	2	11	2	11	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.09	1	10	1	10	n	0.12	1	7	1	7	n	0.09	1	10	1	10	n	0.12	1	7	1	7	n	0.00	0	5	0	5	n	ENSMUSG00000020364.15	Zfp354a	chr11	protein_coding	zinc finger protein 354A
known_NIR_2874	chr11	51154096	51162627	+	51154096	51157998	3pMXE	ENSMUST00000133200.2	known	0.00	0	56	0	56	n	0.04	2	43	2	43	y	0.08	7	76	7	76	y	0.01	1	79	1	79	n	0.06	6	101	6	101	y	0.00	0	33	0	33	n	0.03	2	71	2	71	y	0.07	4	54	4	54	y	0.02	1	65	1	65	n	0.05	4	70	4	70	y	0.02	1	58	1	58	n	0.05	5	99	5	99	y	ENSMUSG00000020385.17	Clk4	chr11	protein_coding	CDC like kinase 4
known_NIR_2875	chr11	51154096	51162627	+	51154096;51158158	51157998;51162627	ES	ENSMUST00000093132.13	known	0.00	0	52.5	0	56;49	n	0.05	2	35.0	2	43;27	y	0.10	7	63.5	7	76;51	y	0.01	1	66.0	1	79;53	n	0.07	6	79.0	6	101;57	y	0.00	0	30.5	0	33;28	n	0.03	2	58.0	2	71;45	y	0.09	4	43.0	4	54;32	y	0.02	1	49.0	1	65;33	n	0.06	4	67.0	4	70;64	y	0.02	1	48.0	1	58;38	n	0.06	5	76.0	5	99;53	y	ENSMUSG00000020385.17	Clk4	chr11	protein_coding	CDC like kinase 4
known_NIR_2876	chr11	51154096	51162627	+	51159058	51162627	A5SS&ES	ENSMUST00000130641.8	known	0.00	0	3	0	3	n	0.40	2	3	2	3	n	0.58	7	5	7	5	y	1.00	1	0	1	0	n	0.43	6	8	6	8	y	0.00	0	5	0	5	n	0.20	2	8	2	8	y	0.57	4	3	4	3	n	1.00	1	0	1	0	n	0.80	4	1	4	1	n	0.20	1	4	1	4	n	0.56	5	4	5	4	n	ENSMUSG00000020385.17	Clk4	chr11	protein_coding	CDC like kinase 4
known_NIR_2877	chr11	51154096	51162627	+	51161422	51162627	A5SS&ES	ENSMUST00000153414.8	known	0.00	0	11	0	11	n	0.20	2	8	2	8	y	0.20	7	28	7	28	y	0.10	1	9	1	9	n	0.20	6	24	6	24	y	0.00	0	10	0	10	n	0.09	2	21	2	21	y	0.24	4	13	4	13	y	0.07	1	13	1	13	n	0.29	4	10	4	10	y	0.09	1	10	1	10	n	0.23	5	17	5	17	y	ENSMUSG00000020385.17	Clk4	chr11	protein_coding	CDC like kinase 4
known_NIR_2878	chr11	51158158	51162627	+	51158158;51159058	51158992;51162627	ES	ENSMUST00000130641.8	known	0.86	49	8.0	49	13;3	y	0.84	27	5.0	27	7;3	y	0.76	51	16.0	51	27;5	y	0.94	53	3.5	53	7;0	n	0.86	57	9.0	57	10;8	y	0.79	28	7.5	28	10;5	y	0.78	45	12.5	45	17;8	y	0.85	32	5.5	32	8;3	y	0.89	33	4.0	33	8;0	n	0.94	64	4.0	64	7;1	n	0.85	38	6.5	38	9;4	y	0.88	53	7.5	53	11;4	y	ENSMUSG00000020385.17	Clk4	chr11	protein_coding	CDC like kinase 4
known_NIR_2879	chr11	51159058	51159596	+	51159058	51162627	A3SS	ENSMUST00000130641.8	known	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.38	3	5	3	5	n	1.00	2	0	2	0	n	0.00	0	8	0	8	n	0.17	1	5	1	5	n	0.27	3	8	3	8	y	0.00	0	3	0	3	n	1.00	2	0	2	0	n	0.67	2	1	2	1	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	ENSMUSG00000020385.17	Clk4	chr11	protein_coding	CDC like kinase 4
known_NIR_2880	chr11	51159058	51161364	+	51159058;51159673	51159596;51161364	ES	ENSMUST00000153414.8	known	1.00	4	0.0	4	0;0	n	0.80	2	0.5	2	1;0	n	0.67	8	4.0	8	3;5	y	0.75	3	1.0	3	2;0	n	0.80	4	1.0	4	0;2	n	0.86	6	1.0	6	1;1	n	0.25	1	3.0	1	3;3	n	1.00	4	0.0	4	0;0	n	0.29	1	2.5	1	2;3	n	0.67	2	1.0	2	2;0	n	-	-	-	-	-	-	1.00	3	0.0	3	0;0	n	ENSMUSG00000020385.17	Clk4	chr11	protein_coding	CDC like kinase 4
known_NIR_2881	chr11	51159058;51161422	51161364;51162627	+	51159058	51162627	cassetteExon	ENSMUST00000130641.8	known	0.71	7.5	3	4;11	3	y	0.62	5.0	3	2;8	3	y	0.78	18.0	5	8;28	5	y	1.00	6.0	0	3;9	0	n	0.64	14.0	8	4;24	8	y	0.62	8.0	5	6;10	5	y	0.58	11.0	8	1;21	8	n	0.74	8.5	3	4;13	3	y	1.00	7.0	0	1;13	0	n	0.86	6.0	1	2;10	1	n	0.56	5.0	4	0;10	4	n	0.71	10.0	4	3;17	4	y	ENSMUSG00000020385.17	Clk4	chr11	protein_coding	CDC like kinase 4
known_NIR_2882	chr11	51161422	51162627	+	51158158	51162627	A5SS	ENSMUST00000093132.13	known	0.18	11	49	11	49	y	0.23	8	27	8	27	y	0.35	28	51	28	51	y	0.15	9	53	9	53	y	0.30	24	57	24	57	y	0.26	10	28	10	28	y	0.32	21	45	21	45	y	0.29	13	32	13	32	y	0.28	13	33	13	33	y	0.14	10	64	10	64	y	0.21	10	38	10	38	y	0.24	17	53	17	53	y	ENSMUSG00000020385.17	Clk4	chr11	protein_coding	CDC like kinase 4
known_NIR_2883	chr11	51162849	51164387	+	51162849;51163995	51163905;51164387	ES	ENSMUST00000130641.8	known	0.26	11	31.5	11	34;29	y	0.28	12	30.5	12	36;25	y	0.13	10	68.0	10	68;68	y	0.21	8	31.0	8	35;27	y	0.25	14	41.5	14	45;38	y	0.23	11	36.5	11	37;36	y	0.35	23	42.5	23	51;34	y	0.33	10	20.0	10	25;15	y	0.43	20	26.0	20	31;21	y	0.10	7	66.0	7	73;59	y	0.39	14	22.0	14	24;20	y	0.11	6	48.5	6	63;34	y	ENSMUSG00000020385.17	Clk4	chr11	protein_coding	CDC like kinase 4
known_NIR_2884	chr11	51491449	51491936	+	51491449	51493622	A3SS	ENSMUST00000101250.12	known	0.18	11	51	11	51	y	0.18	12	54	12	54	y	0.00	0	54	0	54	n	0.22	10	35	10	35	y	0.32	21	44	21	44	y	0.27	8	22	8	22	y	0.24	21	65	21	65	y	0.22	10	35	10	35	y	0.23	12	40	12	40	y	0.27	20	55	20	55	y	0.30	16	37	16	37	y	0.18	9	41	9	41	y	ENSMUSG00000020359.14	Phykpl	chr11	protein_coding	5-phosphohydroxy-L-lysine phospholyase
known_NIR_2885	chr11	51492305	51493420	-	51492717	51493420	A3SS	ENSMUST00000101249.9	known	0.64	290	160	290	160	y	0.62	289	176	289	176	y	0.69	514	231	514	231	y	0.63	272	161	272	161	y	0.65	393	216	393	216	y	0.65	212	116	212	116	y	0.61	317	203	317	203	y	0.62	165	102	165	102	y	0.60	237	161	237	161	y	0.65	351	189	351	189	y	0.67	327	162	327	162	y	0.69	362	161	362	161	y	ENSMUSG00000020358.18	Hnrnpab	chr11	protein_coding	heterogeneous nuclear ribonucleoprotein A/B
known_NIR_2886	chr11	51492305;51492717	51492577;51493420	-	51492305	51493420	cassetteExon	ENSMUST00000074669.10	known	0.38	178.0	290	196;160	290	y	0.40	193.0	289	210;176	289	y	0.33	251.0	514	271;231	514	y	0.42	193.5	272	226;161	272	y	0.38	244.0	393	272;216	393	y	0.36	121.0	212	126;116	212	y	0.44	249.5	317	296;203	317	y	0.40	109.0	165	116;102	165	y	0.40	161.0	237	161;161	237	y	0.40	229.5	351	270;189	351	y	0.37	191.5	327	221;162	327	y	0.34	190.0	362	219;161	362	y	ENSMUSG00000020358.18	Hnrnpab	chr11	protein_coding	heterogeneous nuclear ribonucleoprotein A/B
known_NIR_2887	chr11	51515473	51516496	-	51515404	51516496	A3SS	ENSMUST00000001081.10	known	0.00	0	42	0	42	n	0.07	3	40	3	40	y	0.00	0	52	0	52	n	0.00	0	38	0	38	n	0.00	0	44	0	44	n	0.08	2	24	2	24	y	0.00	0	39	0	39	n	0.00	0	24	0	24	n	0.00	0	29	0	29	n	0.02	1	42	1	42	n	0.03	1	36	1	36	n	0.03	1	31	1	31	n	ENSMUSG00000001054.10	Rmnd5b	chr11	protein_coding	required for meiotic nuclear division 5 homolog B
known_NIR_2888	chr11	51520488	51526417	-	51520453	51526417	A3SS	ENSMUST00000136020.8	known	1.00	24	0	24	0	n	1.00	22	0	22	0	n	1.00	31	0	31	0	n	1.00	40	0	40	0	n	1.00	34	0	34	0	n	1.00	12	0	12	0	n	1.00	37	0	37	0	n	1.00	16	0	16	0	n	1.00	27	0	27	0	n	1.00	29	0	29	0	n	1.00	32	0	32	0	n	0.86	37	6	37	6	y	ENSMUSG00000001054.10	Rmnd5b	chr11	protein_coding	required for meiotic nuclear division 5 homolog B
known_NIR_2889	chr11	51544698	51544819	+	51544698	51544838	A3SS	ENSMUST00000117859.8	known	1.00	10	0	10	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.57	8	6	8	6	y	0.80	12	3	12	3	y	-	-	-	-	-	-	0.56	5	4	5	4	n	1.00	3	0	3	0	n	0.36	4	7	4	7	y	0.83	10	2	10	2	y	0.91	10	1	10	1	n	0.73	8	3	8	3	y	ENSMUSG00000052563.14	D930048N14Rik	chr11	protein_coding	RIKEN cDNA D930048N14 gene
known_NIR_2890	chr11	51576919	51579517	-	51576919	51579375	5pMXE	ENSMUST00000007921.9	known	0.01	1	107	1	107	n	0.04	5	108	5	108	y	0.00	0	128	0	128	n	0.00	0	124	0	124	n	0.00	0	140	0	140	n	0.00	0	92	0	92	n	0.01	1	151	1	151	n	0.00	0	99	0	99	n	0.00	0	93	0	93	n	0.00	0	123	0	123	n	0.00	0	101	0	101	n	0.00	0	155	0	155	n	ENSMUSG00000007777.10	0610009B22Rik	chr11	protein_coding	RIKEN cDNA 0610009B22 gene
known_NIR_2891	chr11	51620402	51622630	-	51620405	51622630	A3SS	ENSMUST00000109097.9	known	0.23	11	36	11	36	y	0.20	6	24	6	24	y	0.23	23	75	23	75	y	0.29	22	54	22	54	y	0.20	20	78	20	78	y	0.20	10	40	10	40	y	0.25	19	57	19	57	y	0.36	23	41	23	41	y	0.12	6	43	6	43	y	0.29	26	63	26	63	y	0.43	21	28	21	28	y	0.25	25	76	25	76	y	ENSMUSG00000036391.17	Sec24a	chr11	protein_coding	Sec24 related gene family, member A (S. cerevisiae)
known_NIR_2892	chr11	51739878	51747859	-	51739878	51748138	A5SS	ENSMUST00000020655.14	known	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.56	5	4	5	4	n	0.00	0	2	0	2	n	0.60	6	4	6	4	y	0.20	1	4	1	4	n	0.86	6	1	6	1	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000020387.16	Jade2	chr11	protein_coding	jade family PHD finger 2
known_NIR_2893	chr11	52123439	52127664	+	52122945	52127664	A5SS	ENSMUST00000147684.8	known	0.00	0	681	0	681	n	0.00	0	579	0	579	n	0.00	1	588	1	588	n	0.00	0	861	0	861	n	0.00	0	792	0	792	n	0.00	0	313	0	313	n	0.00	0	896	0	896	n	0.00	0	400	0	400	n	0.00	0	662	0	662	n	0.00	0	961	0	961	n	0.00	0	677	0	677	n	0.00	2	830	2	830	y	ENSMUSG00000036309.15	Skp1	chr11	protein_coding	S-phase kinase-associated protein 1
known_NIR_2894	chr11	52127760	52129078	+	52127760	52133414	A3SS	ENSMUST00000037324.12	known	0.00	0	634	0	634	n	0.00	0	563	0	563	n	0.01	5	475	5	475	y	0.00	0	780	0	780	n	0.00	2	742	2	742	y	0.00	0	290	0	290	n	0.00	0	813	0	813	n	0.00	0	343	0	343	n	0.00	0	585	0	585	n	0.00	1	898	1	898	n	0.00	0	642	0	642	n	0.00	1	806	1	806	n	ENSMUSG00000036309.15	Skp1	chr11	protein_coding	S-phase kinase-associated protein 1
known_NIR_2895	chr11	52127760	52133414	+	52127760;52128299	52128211;52133414	ES	ENSMUST00000147684.8	known	0.99	634	6.0	634	4;8	y	0.99	563	5.5	563	7;4	y	1.00	475	1.5	475	0;3	n	0.99	780	6.0	780	3;9	y	0.99	742	5.5	742	7;4	y	0.99	290	4.0	290	3;5	y	0.99	813	5.0	813	5;5	y	1.00	343	1.5	343	3;0	n	0.99	585	4.0	585	6;2	y	0.99	898	6.5	898	8;5	y	0.99	642	3.5	642	6;1	n	1.00	806	2.0	806	1;3	n	ENSMUSG00000036309.15	Skp1	chr11	protein_coding	S-phase kinase-associated protein 1
known_NIR_2896	chr11	52127760;52128299	52128211;52133414	+	52127760;52133301	52129078;52133414	MXE	ENSMUST00000116595.3	known	0.92	6.0	0.5	4;8	0;1	n	1.00	5.5	0.0	7;4	0;0	n	0.33	1.5	3.0	0;3	5;1	n	1.00	6.0	0.0	3;9	0;0	n	0.73	5.5	2.0	7;4	2;2	y	1.00	4.0	0.0	3;5	0;0	n	0.77	5.0	1.5	5;5	0;3	n	1.00	1.5	0.0	3;0	0;0	n	1.00	4.0	0.0	6;2	0;0	n	0.81	6.5	1.5	8;5	1;2	n	1.00	3.5	0.0	6;1	0;0	n	0.80	2.0	0.5	1;3	1;0	n	ENSMUSG00000036309.15	Skp1	chr11	protein_coding	S-phase kinase-associated protein 1
known_NIR_2897	chr11	52133301	52133414	+	52127760	52133414	A5SS	ENSMUST00000037324.12	known	0.00	1	634	1	634	n	0.00	0	563	0	563	n	0.00	1	475	1	475	n	0.00	0	780	0	780	n	0.00	2	742	2	742	y	0.00	0	290	0	290	n	0.00	3	813	3	813	y	0.00	0	343	0	343	n	0.00	0	585	0	585	n	0.00	2	898	2	898	y	0.00	0	642	0	642	n	0.00	0	806	0	806	n	ENSMUSG00000036309.15	Skp1	chr11	protein_coding	S-phase kinase-associated protein 1
known_NIR_2898	chr11	52133487	52135808	+	52133487;52134585	52134442;52135808	ES	ENSMUST00000147684.8	known	0.01	11	901.5	11	882;921	y	0.00	3	826.5	3	731;922	y	0.03	22	678.5	22	629;728	y	0.01	6	1023.0	6	939;1107	y	0.01	11	1032.0	11	946;1118	y	0.00	0	390.0	0	374;406	n	0.00	5	1166.5	5	1023;1310	y	0.01	6	429.0	6	386;472	y	0.01	7	777.5	7	688;867	y	0.02	22	1311.5	22	1150;1473	y	0.01	11	973.5	11	891;1056	y	0.01	16	1089.0	16	996;1182	y	ENSMUSG00000036309.15	Skp1	chr11	protein_coding	S-phase kinase-associated protein 1
known_NIR_2899	chr11	52145998	52147085	-	52144789	52147085	A3SS	ENSMUST00000086844.10	known	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.20	2	8	2	8	y	0.67	2	1	2	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.40	2	3	2	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	6	0	6	n	ENSMUSG00000000782.17	Tcf7	chr11	protein_coding	transcription factor 7, T cell specific
known_NIR_2900	chr11	53258993	53259487	+	53241956	53259487	A5SS	ENSMUST00000060945.12	known	0.00	0	5	0	5	n	0.25	2	6	2	6	n	0.06	3	50	3	50	y	0.17	4	20	4	20	y	0.10	4	38	4	38	y	0.00	0	24	0	24	n	0.17	4	19	4	19	y	0.12	3	23	3	23	y	0.10	1	9	1	9	n	0.12	4	28	4	28	y	0.15	2	11	2	11	y	0.10	2	19	2	19	y	ENSMUSG00000049470.14	Aff4	chr11	protein_coding	AF4/FMR2 family, member 4
known_NIR_2901	chr11	53266460	53280582	+	53266460;53271499	53271413;53280582	ES	ENSMUST00000060945.12	known	0.21	3	11.0	3	8;14	y	0.00	0	9.5	0	10;9	n	0.03	2	75.5	2	76;75	y	0.00	0	23.0	0	16;30	n	0.00	0	48.0	0	46;50	n	0.00	0	35.0	0	34;36	n	0.13	5	34.0	5	28;40	y	0.10	2	17.5	2	19;16	y	0.06	1	16.5	1	18;15	n	0.03	1	38.5	1	34;43	n	0.00	0	17.0	0	17;17	n	0.00	0	40.5	0	33;48	n	ENSMUSG00000049470.14	Aff4	chr11	protein_coding	AF4/FMR2 family, member 4
known_NIR_2902	chr11	53319977	53320956	-	53319977	53321363	A5SS	ENSMUST00000061326.5	known	0.00	4	2564	4	2564	y	0.00	4	3240	4	3240	y	0.01	19	2720	19	2720	y	0.00	2	2418	2	2418	y	0.00	3	3319	3	3319	y	0.00	4	1771	4	1771	y	0.00	5	3670	5	3670	y	0.00	9	1840	9	1840	y	0.00	6	2332	6	2332	y	0.00	0	3661	0	3661	n	0.00	4	3426	4	3426	y	0.00	7	3215	7	3215	y	ENSMUSG00000044894.15	Uqcrq	chr11	protein_coding	ubiquinol-cytochrome c reductase, complex III subunit VII
known_NIR_2903	chr11	53319977	53321482	-	53319977	53320956	5pMXE	ENSMUST00000109019.8	known	0.95	71	4	71	4	y	0.95	77	4	77	4	y	0.72	50	19	50	19	y	0.97	61	2	61	2	y	0.96	81	3	81	3	y	0.92	45	4	45	4	y	0.95	87	5	87	5	y	0.82	40	9	40	9	y	0.91	64	6	64	6	y	1.00	88	0	88	0	n	0.95	81	4	81	4	y	0.91	70	7	70	7	y	ENSMUSG00000044894.15	Uqcrq	chr11	protein_coding	ubiquinol-cytochrome c reductase, complex III subunit VII
known_NIR_2904	chr11	53319977	53321482	-	53319977	53321363	A5SS	ENSMUST00000061326.5	known	0.03	71	2564	71	2564	y	0.02	77	3240	77	3240	y	0.02	50	2720	50	2720	y	0.02	61	2418	61	2418	y	0.02	81	3319	81	3319	y	0.02	45	1771	45	1771	y	0.02	87	3670	87	3670	y	0.02	40	1840	40	1840	y	0.03	64	2332	64	2332	y	0.02	88	3661	88	3661	y	0.02	81	3426	81	3426	y	0.02	70	3215	70	3215	y	ENSMUSG00000044894.15	Uqcrq	chr11	protein_coding	ubiquinol-cytochrome c reductase, complex III subunit VII
known_NIR_2905	chr11	53355157	53356323	+	53355157;53356135	53355947;53356323	ES	ENSMUST00000109013.9	known	0.04	2	46.0	2	35;57	y	0.17	7	34.5	7	32;37	y	0.05	5	96.0	5	90;102	y	0.02	1	49.5	1	46;53	n	0.02	1	61.5	1	57;66	n	0.00	0	26.5	0	30;23	n	0.08	4	49.0	4	34;64	y	0.08	2	24.0	2	23;25	y	0.05	2	37.5	2	35;40	y	0.05	3	52.5	3	49;56	y	0.00	0	45.5	0	42;49	n	0.05	2	39.5	2	43;36	y	ENSMUSG00000018387.13	Shroom1	chr11	protein_coding	shroom family member 1
known_NIR_2906	chr11	53569885	53570860	-	53569885;53570343	53570217;53570860	ES	ENSMUST00000020649.14	known	0.00	0	11.0	0	15;7	n	0.00	0	3.0	0	1;5	n	0.21	2	7.5	2	7;8	y	0.00	0	8.5	0	9;8	n	0.00	0	13.0	0	10;16	n	0.00	0	3.0	0	0;6	n	0.00	0	10.5	0	12;9	n	0.14	2	12.0	2	17;7	y	0.00	0	7.0	0	3;11	n	0.00	0	15.5	0	20;11	n	0.00	0	10.5	0	11;10	n	0.00	0	10.0	0	10;10	n	ENSMUSG00000020380.17	Rad50	chr11	protein_coding	RAD50 double strand break repair protein
known_NIR_2907	chr11	53575128	53578922	-	53575128;53577134	53576977;53578922	ES	ENSMUST00000020649.14	known	0.00	0	2.0	0	4;0	n	0.00	0	2.5	0	4;1	n	0.00	0	6.0	0	6;6	n	0.00	0	9.0	0	9;9	n	0.15	2	11.0	2	9;13	y	0.00	0	2.5	0	2;3	n	0.00	0	7.0	0	7;7	n	0.00	0	6.5	0	5;8	n	0.00	0	7.5	0	5;10	n	0.00	0	7.0	0	8;6	n	0.00	0	3.0	0	2;4	n	0.00	0	8.5	0	10;7	n	ENSMUSG00000020380.17	Rad50	chr11	protein_coding	RAD50 double strand break repair protein
known_NIR_2908	chr11	53661448	53662110	+	53661104	53662110	A5SS	ENSMUST00000108920.10	known	0.04	3	78	3	78	y	0.00	0	32	0	32	n	0.00	0	72	0	72	n	0.00	0	66	0	66	n	0.01	1	92	1	92	n	0.00	0	34	0	34	n	0.01	1	74	1	74	n	0.00	0	54	0	54	n	0.05	3	52	3	52	y	0.02	1	52	1	52	n	0.04	2	47	2	47	y	0.00	0	66	0	66	n	ENSMUSG00000018899.18	Irf1	chr11	protein_coding	interferon regulatory factor 1
known_NIR_2909	chr11	53661448	53662110	+	53661517	53662110	A5SS	ENSMUST00000019043.13	known	0.21	3	11	3	11	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.12	1	7	1	7	n	0.00	0	6	0	6	n	1.00	3	0	3	0	n	0.20	1	4	1	4	n	0.25	2	6	2	6	n	0.00	0	5	0	5	n	ENSMUSG00000018899.18	Irf1	chr11	protein_coding	interferon regulatory factor 1
known_NIR_2910	chr11	53661517	53662110	+	53661104	53662110	A5SS	ENSMUST00000108920.10	known	0.12	11	78	11	78	y	0.03	1	32	1	32	n	0.00	0	72	0	72	n	0.10	7	66	7	66	y	0.04	4	92	4	92	y	0.03	1	34	1	34	n	0.09	7	74	7	74	y	0.10	6	54	6	54	y	0.00	0	52	0	52	n	0.07	4	52	4	52	y	0.11	6	47	6	47	y	0.07	5	66	5	66	y	ENSMUSG00000018899.18	Irf1	chr11	protein_coding	interferon regulatory factor 1
known_NIR_2911	chr11	53661517	53662110	+	53661583	53662110	A5SS	ENSMUST00000123376.8	known	0.85	11	2	11	2	y	0.50	1	1	1	1	n	-	-	-	-	-	-	0.54	7	6	7	6	y	0.36	4	7	4	7	y	1.00	1	0	1	0	n	0.64	7	4	7	4	y	0.67	6	3	6	3	n	0.00	0	2	0	2	n	0.40	4	6	4	6	y	1.00	6	0	6	0	n	0.42	5	7	5	7	y	ENSMUSG00000018899.18	Irf1	chr11	protein_coding	interferon regulatory factor 1
known_NIR_2912	chr11	53661583	53662110	+	53661104	53662110	A5SS	ENSMUST00000108920.10	known	0.03	2	78	2	78	y	0.03	1	32	1	32	n	0.00	0	72	0	72	n	0.08	6	66	6	66	y	0.07	7	92	7	92	y	0.00	0	34	0	34	n	0.05	4	74	4	74	y	0.05	3	54	3	54	y	0.04	2	52	2	52	y	0.10	6	52	6	52	y	0.00	0	47	0	47	n	0.10	7	66	7	66	y	ENSMUSG00000018899.18	Irf1	chr11	protein_coding	interferon regulatory factor 1
known_NIR_2913	chr11	53661635	53662110	+	53661104	53662110	A5SS	ENSMUST00000108920.10	known	0.01	1	78	1	78	n	0.06	2	32	2	32	y	0.00	0	72	0	72	n	0.00	0	66	0	66	n	0.00	0	92	0	92	n	0.00	0	34	0	34	n	0.00	0	74	0	74	n	0.04	2	54	2	54	y	0.00	0	52	0	52	n	0.02	1	52	1	52	n	0.00	0	47	0	47	n	0.00	0	66	0	66	n	ENSMUSG00000018899.18	Irf1	chr11	protein_coding	interferon regulatory factor 1
known_NIR_2914	chr11	53662201	53664482	+	53662201	53663665	3pMXE	ENSMUST00000138913.8	known	0.00	0	77	0	77	n	0.00	0	34	0	34	n	0.03	2	57	2	57	y	0.00	0	92	0	92	n	0.00	0	79	0	79	n	0.00	0	22	0	22	n	0.00	0	67	0	67	n	0.04	2	48	2	48	y	0.00	0	71	0	71	n	0.00	0	73	0	73	n	0.00	0	62	0	62	n	0.00	0	74	0	74	n	ENSMUSG00000018899.18	Irf1	chr11	protein_coding	interferon regulatory factor 1
known_NIR_2915	chr11	53662201	53664482	+	53662201;53663764	53663665;53664482	ES	ENSMUST00000108920.10	known	0.00	0	99.5	0	77;122	n	0.00	0	55.5	0	34;77	n	0.03	2	72.0	2	57;87	y	0.00	0	110.0	0	92;128	n	0.00	0	101.5	0	79;124	n	0.00	0	35.0	0	22;48	n	0.00	0	74.0	0	67;81	n	0.03	2	61.5	2	48;75	y	0.00	0	77.0	0	71;83	n	0.00	0	95.5	0	73;118	n	0.00	0	77.0	0	62;92	n	0.00	0	110.0	0	74;146	n	ENSMUSG00000018899.18	Irf1	chr11	protein_coding	interferon regulatory factor 1
known_NIR_2916	chr11	53765932	53766835	-	53765932	53781973	A5SS	ENSMUST00000136307.2	known	1.00	19	0	19	0	n	1.00	25	0	25	0	n	1.00	72	0	72	0	n	1.00	37	0	37	0	n	1.00	49	0	49	0	n	1.00	31	0	31	0	n	0.99	77	1	77	1	n	1.00	37	0	37	0	n	1.00	31	0	31	0	n	1.00	47	0	47	0	n	1.00	40	0	40	0	n	0.94	32	2	32	2	y	ENSMUSG00000018900.8	Slc22a5	chr11	protein_coding	solute carrier family 22 (organic cation transporter), member 5
known_NIR_2917	chr11	53774590	53781973	-	53765932	53781973	A3SS	ENSMUST00000136307.2	known	1.00	29	0	29	0	n	1.00	15	0	15	0	n	1.00	73	0	73	0	n	1.00	41	0	41	0	n	1.00	62	0	62	0	n	1.00	45	0	45	0	n	0.99	69	1	69	1	n	1.00	50	0	50	0	n	1.00	25	0	25	0	n	1.00	62	0	62	0	n	1.00	35	0	35	0	n	0.95	38	2	38	2	y	ENSMUSG00000018900.8	Slc22a5	chr11	protein_coding	solute carrier family 22 (organic cation transporter), member 5
known_NIR_2918	chr11	53905282	53918410	-	53898697	53918410	A3SS	ENSMUST00000020586.7	known	0.00	0	1	0	1	n	0.50	2	2	2	2	n	0.50	1	1	1	1	n	0.38	3	5	3	5	n	0.38	3	5	3	5	n	-	-	-	-	-	-	0.60	3	2	3	2	n	0.33	1	2	1	2	n	0.12	1	7	1	7	n	0.29	5	12	5	12	y	0.50	4	4	4	4	n	0.00	0	3	0	3	n	ENSMUSG00000020334.7	Slc22a4	chr11	protein_coding	solute carrier family 22 (organic cation transporter), member 4
known_NIR_2919	chr11	54016642	54017172	+	54016642	54017064	A3SS	ENSMUST00000125651.8	known	0.33	8	16	8	16	y	0.26	6	17	6	17	y	0.38	8	13	8	13	y	0.39	9	14	9	14	y	0.26	8	23	8	23	y	0.20	2	8	2	8	y	0.20	5	20	5	20	y	0.00	0	6	0	6	n	0.30	3	7	3	7	y	0.15	4	22	4	22	y	0.57	8	6	8	6	y	0.50	6	6	6	6	y	ENSMUSG00000018906.15	P4ha2	chr11	protein_coding	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide
known_NIR_2920	chr11	54016642;54017237	54017172;54019874	+	54016642;54017123	54017064;54019874	MXE	ENSMUST00000093107.12	known	0.39	8.5	13.5	8;9	16;11	y	0.27	5.0	13.5	6;4	17;10	y	0.47	12.0	13.5	8;16	13;14	y	0.28	6.5	16.5	9;4	14;19	y	0.33	11.0	22.5	8;14	23;22	y	0.33	3.0	6.0	2;4	8;4	y	0.34	10.0	19.5	5;15	20;19	y	0.18	1.5	7.0	0;3	6;8	n	0.21	2.0	7.5	3;1	7;8	n	0.14	3.5	21.0	4;3	22;20	y	0.50	9.0	9.0	8;10	6;12	y	0.45	4.5	5.5	6;3	6;5	y	ENSMUSG00000018906.15	P4ha2	chr11	protein_coding	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide
known_NIR_2921	chr11	54356249	54356913	+	54329214	54356913	A5SS	ENSMUST00000046835.14	known	0.00	0	4	0	4	n	0.11	1	8	1	8	n	0.00	0	14	0	14	n	0.19	3	13	3	13	y	0.48	10	11	10	11	y	0.00	0	6	0	6	n	0.17	2	10	2	10	y	0.12	2	15	2	15	y	0.50	7	7	7	7	y	0.25	7	21	7	21	y	0.45	5	6	5	6	y	0.33	6	12	6	12	y	ENSMUSG00000035992.16	Fnip1	chr11	protein_coding	folliculin interacting protein 1
known_NIR_2922	chr11	54582566	54586906	+	54582566;54585398	54585096;54586906	ES	ENSMUST00000102743.10	known	0.32	4	8.5	4	9;8	y	0.00	0	6.5	0	7;6	n	0.04	1	21.5	1	11;32	n	0.15	2	11.5	2	11;12	y	0.00	0	19.5	0	17;22	n	0.12	1	7.0	1	4;10	n	0.14	2	12.0	2	9;15	y	0.00	0	14.0	0	9;19	n	0.20	2	8.0	2	5;11	y	0.10	2	17.5	2	14;21	y	0.00	0	6.5	0	5;8	n	0.00	0	14.0	0	10;18	n	ENSMUSG00000037533.21	Rapgef6	chr11	protein_coding	Rap guanine nucleotide exchange factor (GEF) 6
known_NIR_2923	chr11	54647385	54651007	-	54647385	54678386	A5SS	ENSMUST00000064104.13	known	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	28	0	28	n	0.00	0	17	0	17	n	0.00	0	26	0	26	n	0.00	0	14	0	14	n	0.00	0	18	0	18	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.08	1	12	1	12	n	0.12	2	15	2	15	y	0.00	0	22	0	22	n	ENSMUSG00000052298.13	Cdc42se2	chr11	protein_coding	CDC42 small effector 2
known_NIR_2924	chr11	54802323	54806323	-	54802397	54806323	A3SS	ENSMUST00000108889.10	known	0.61	14	9	14	9	y	0.57	13	10	13	10	y	0.41	12	17	12	17	y	0.83	15	3	15	3	y	0.48	11	12	11	12	y	0.72	13	5	13	5	y	0.77	17	5	17	5	y	0.52	13	12	13	12	y	0.70	7	3	7	3	y	0.70	16	7	16	7	y	0.56	9	7	9	7	y	0.82	9	2	9	2	y	ENSMUSG00000020400.18	Tnip1	chr11	protein_coding	TNFAIP3 interacting protein 1
known_NIR_2925	chr11	54830561	54846847	-	54830561	54831537	A5SS&ES	ENSMUST00000155316.2	known	0.06	1	15	1	15	n	0.38	6	10	6	10	y	0.27	4	11	4	11	y	0.22	2	7	2	7	n	0.10	2	18	2	18	y	0.33	4	8	4	8	y	0.06	1	15	1	15	n	0.08	1	11	1	11	n	0.30	3	7	3	7	y	0.50	6	6	6	6	y	0.33	4	8	4	8	y	0.31	4	9	4	9	y	ENSMUSG00000020400.18	Tnip1	chr11	protein_coding	TNFAIP3 interacting protein 1
known_NIR_2926	chr11	54830561	54846847	-	54830561;54831708	54831537;54846847	ES	ENSMUST00000108889.10	known	0.12	1	7.5	1	15;0	n	0.52	6	5.5	6	10;1	n	0.32	4	8.5	4	11;6	y	0.27	2	5.5	2	7;4	y	0.14	2	12.5	2	18;7	y	0.35	4	7.5	4	8;7	y	0.07	1	12.5	1	15;10	n	0.09	1	10.0	1	11;9	n	0.35	3	5.5	3	7;4	y	0.50	6	6.0	6	6;6	y	0.36	4	7.0	4	8;6	y	0.38	4	6.5	4	9;4	y	ENSMUSG00000020400.18	Tnip1	chr11	protein_coding	TNFAIP3 interacting protein 1
known_NIR_2927	chr11	54830561	54846847	-	54831708	54846847	3pMXE	ENSMUST00000151736.2	known	1.00	1	0	1	0	n	0.86	6	1	6	1	n	0.40	4	6	4	6	y	0.33	2	4	2	4	n	0.22	2	7	2	7	n	0.36	4	7	4	7	y	0.09	1	10	1	10	n	0.10	1	9	1	9	n	0.43	3	4	3	4	n	0.50	6	6	6	6	y	0.40	4	6	4	6	y	0.50	4	4	4	4	n	ENSMUSG00000020400.18	Tnip1	chr11	protein_coding	TNFAIP3 interacting protein 1
known_NIR_2928	chr11	54830561	54853659	-	54830561	54846847	5pMXE	ENSMUST00000126703.8	known	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.50	4	4	4	4	n	0.00	0	2	0	2	n	0.60	3	2	3	2	n	0.20	1	4	1	4	n	0.67	2	1	2	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.40	4	6	4	6	y	0.00	0	4	0	4	n	0.20	1	4	1	4	n	ENSMUSG00000020400.18	Tnip1	chr11	protein_coding	TNFAIP3 interacting protein 1
known_NIR_2929	chr11	54830561	54853659	-	54830561;54831708	54831537;54853659	ES	ENSMUST00000018482.13	known	0.00	0	7.5	0	15;0	n	0.00	0	5.0	0	10;0	n	0.38	4	6.5	4	11;2	y	0.00	0	3.5	0	7;0	n	0.23	3	10.0	3	18;2	y	0.20	1	4.0	1	8;0	n	0.21	2	7.5	2	15;0	n	0.00	0	6.5	0	11;2	n	0.00	0	4.0	0	7;1	n	0.57	4	3.0	4	6;0	n	0.00	0	4.0	0	8;0	n	0.17	1	5.0	1	9;1	n	ENSMUSG00000020400.18	Tnip1	chr11	protein_coding	TNFAIP3 interacting protein 1
known_NIR_2930	chr11	54831708	54846674	-	54831708	54846847	A5SS	ENSMUST00000108889.10	known	-	-	-	-	-	-	0.00	0	1	0	1	n	0.14	1	6	1	6	n	0.43	3	4	3	4	n	0.00	0	7	0	7	n	0.22	2	7	2	7	n	0.17	2	10	2	10	y	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.33	2	4	2	4	n	ENSMUSG00000020400.18	Tnip1	chr11	protein_coding	TNFAIP3 interacting protein 1
known_NIR_2931	chr11	54831708	54853659	-	54831708	54846847	5pMXE	ENSMUST00000108889.10	known	-	-	-	-	-	-	0.00	0	1	0	1	n	0.25	2	6	2	6	n	0.00	0	4	0	4	n	0.22	2	7	2	7	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.18	2	9	2	9	y	0.20	1	4	1	4	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.20	1	4	1	4	n	ENSMUSG00000020400.18	Tnip1	chr11	protein_coding	TNFAIP3 interacting protein 1
known_NIR_2932	chr11	54877041	54882217	-	54877041;54877894	54877877;54882217	ES	ENSMUST00000108883.10	known	0.42	111	156.0	111	160;152	y	0.37	99	170.5	99	176;165	y	0.30	50	119.0	50	127;111	y	0.44	123	156.5	123	163;150	y	0.35	108	204.0	108	215;193	y	0.31	30	67.5	30	70;65	y	0.32	115	247.0	115	253;241	y	0.39	59	92.5	59	97;88	y	0.37	101	169.5	101	182;157	y	0.43	168	226.5	168	233;220	y	0.33	102	203.0	102	210;196	y	0.41	127	186.0	127	189;183	y	ENSMUSG00000018340.14	Anxa6	chr11	protein_coding	annexin A6
known_NIR_2933	chr11	55298105	55300754	-	55298102	55300754	A3SS	ENSMUST00000108858.8	known	0.79	19	5	19	5	y	0.96	23	1	23	1	n	0.89	56	7	56	7	y	0.76	16	5	16	5	y	0.83	43	9	43	9	y	0.85	29	5	29	5	y	0.88	81	11	81	11	y	0.90	19	2	19	2	y	0.67	12	6	12	6	y	0.90	27	3	27	3	y	0.82	14	3	14	3	y	0.82	31	7	31	7	y	ENSMUSG00000018593.14	Sparc	chr11	protein_coding	secreted acidic cysteine rich glycoprotein
known_NIR_2934	chr11	55337610	55345707	-	55337610;55341451	55341283;55345707	ES	ENSMUST00000108857.2	known	0.00	2	1264.0	2	1117;1411	y	0.00	5	1268.5	5	1103;1434	y	0.00	4	1278.0	4	1113;1443	y	0.01	6	993.0	6	832;1154	y	0.01	10	1576.5	10	1275;1878	y	0.01	5	837.0	5	716;958	y	0.01	9	1609.0	9	1369;1849	y	0.00	3	812.5	3	660;965	y	0.00	1	874.0	1	706;1042	n	0.00	4	1369.5	4	1160;1579	y	0.01	9	1277.0	9	1067;1487	y	0.00	0	1048.5	0	893;1204	n	ENSMUSG00000018585.10	Atox1	chr11	protein_coding	antioxidant 1 copper chaperone
known_NIR_2935	chr11	55376564	55377944	+	55376564	55378305	A3SS	ENSMUST00000018727.4	known	0.00	0	83	0	83	n	0.03	2	68	2	68	y	0.01	1	81	1	81	n	0.00	0	101	0	101	n	0.00	0	97	0	97	n	0.02	2	81	2	81	y	0.00	0	117	0	117	n	0.00	0	70	0	70	n	0.01	1	83	1	83	n	0.00	0	82	0	82	n	0.00	0	85	0	85	n	0.00	0	118	0	118	n	ENSMUSG00000018583.6	G3bp1	chr11	protein_coding	GTPase activating protein (SH3 domain) binding protein 1
known_NIR_2936	chr11	5676857	5711881	-	5676857	5691097	5pMXE	ENSMUST00000093362.12	known	0.44	4	5	4	5	n	0.00	0	9	0	9	n	0.45	9	11	9	11	y	0.44	7	9	7	9	y	0.30	8	19	8	19	y	0.26	5	14	5	14	y	0.35	7	13	7	13	y	0.33	7	14	7	14	y	0.00	0	8	0	8	n	0.19	5	21	5	21	y	0.38	8	13	8	13	y	0.14	2	12	2	12	y	ENSMUSG00000049680.18	Urgcp	chr11	protein_coding	upregulator of cell proliferation
known_NIR_2937	chr11	5712240	5730206	+	5712240;5715571	5715509;5730206	ES	ENSMUST00000137510.8	known	0.00	0	39.5	0	32;47	n	0.00	0	31.5	0	25;38	n	0.06	2	34.0	2	27;41	y	0.00	0	27.0	0	24;30	n	0.00	0	54.0	0	45;63	n	0.09	3	30.0	3	29;31	y	0.00	0	62.5	0	59;66	n	0.00	0	18.0	0	14;22	n	0.03	1	28.0	1	19;37	n	0.02	1	45.0	1	43;47	n	0.02	1	55.5	1	61;50	n	0.00	0	33.5	0	34;33	n	ENSMUSG00000083844.9	Ube2d-ps	chr11	transcribed_unprocessed_pseudogene	ubiquitin-conjugating enzyme E2D, pseudogene
known_NIR_2938	chr11	5715571;5719243	5718886;5730206	+	5715571	5730206	cassetteExon	ENSMUST00000137510.8	known	0.06	3.0	47	3;3	47	y	0.08	3.5	38	0;7	38	n	0.07	3.0	41	2;4	41	y	0.06	2.0	30	1;3	30	n	0.03	2.0	63	1;3	63	n	0.05	1.5	31	1;2	31	n	0.05	3.5	66	4;3	66	y	0.00	0.0	22	0;0	22	n	0.00	0.0	37	0;0	37	n	0.03	1.5	47	0;3	47	n	0.01	0.5	50	0;1	50	n	0.07	2.5	33	0;5	33	n	ENSMUSG00000083844.9	Ube2d-ps	chr11	transcribed_unprocessed_pseudogene	ubiquitin-conjugating enzyme E2D, pseudogene
known_NIR_2939	chr11	5715571;5719243	5719167;5730206	+	5715571	5730206	cassetteExon	ENSMUST00000137510.8	known	0.03	1.5	47	0;3	47	n	0.08	3.5	38	0;7	38	n	0.08	3.5	41	3;4	41	y	0.05	1.5	30	0;3	30	n	0.02	1.5	63	0;3	63	n	0.03	1.0	31	0;2	31	n	0.02	1.5	66	0;3	66	n	0.00	0.0	22	0;0	22	n	0.00	0.0	37	0;0	37	n	0.04	2.0	47	1;3	47	n	0.03	1.5	50	2;1	50	n	0.08	3.0	33	1;5	33	n	ENSMUSG00000083844.9	Ube2d-ps	chr11	transcribed_unprocessed_pseudogene	ubiquitin-conjugating enzyme E2D, pseudogene
known_NIR_2940	chr11	5732278	5733892	+	5732357	5733892	A5SS	ENSMUST00000142942.8	known	0.00	0	1	0	1	n	0.50	2	2	2	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	1.00	4	0	4	0	n	0.33	2	4	2	4	n	0.50	1	1	1	1	n	0.00	0	5	0	5	n	0.36	4	7	4	7	y	0.33	1	2	1	2	n	0.50	2	2	2	2	n	ENSMUSG00000083844.9	Ube2d-ps	chr11	transcribed_unprocessed_pseudogene	ubiquitin-conjugating enzyme E2D, pseudogene
known_NIR_2941	chr11	57404561	57404900	-	57404561	57404921	A5SS	ENSMUST00000020831.13	known	0.07	3	37	3	37	y	0.00	0	41	0	41	n	0.06	4	61	4	61	y	0.04	2	48	2	48	y	0.02	1	64	1	64	n	0.06	3	47	3	47	y	0.04	2	52	2	52	y	0.05	2	36	2	36	y	0.07	3	39	3	39	y	0.02	1	63	1	63	n	0.00	0	31	0	31	n	0.02	1	49	1	49	n	ENSMUSG00000020523.15	Fam114a2	chr11	protein_coding	family with sequence similarity 114, member A2
known_NIR_2942	chr11	5747175	5747275	+	5747175	5747287	A3SS	ENSMUST00000109845.8	known	0.14	7	42	7	42	y	0.16	6	32	6	32	y	0.25	10	30	10	30	y	0.20	13	52	13	52	y	0.14	10	59	10	59	y	0.22	6	21	6	21	y	0.12	6	43	6	43	y	0.18	4	18	4	18	y	0.13	5	33	5	33	y	0.13	6	41	6	41	y	0.06	2	31	2	31	y	0.24	13	42	13	42	y	ENSMUSG00000020476.15	Dbnl	chr11	protein_coding	drebrin-like
known_NIR_2943	chr11	5747175	5747284	+	5747175	5747275	A3SS	ENSMUST00000020769.14	known	0.73	19	7	19	7	y	0.71	15	6	15	6	y	0.72	26	10	26	10	y	0.72	34	13	34	13	y	0.73	27	10	27	10	y	0.71	15	6	15	6	y	0.75	18	6	18	6	y	0.82	18	4	18	4	y	0.74	14	5	14	5	y	0.81	25	6	25	6	y	0.92	22	2	22	2	y	0.54	15	13	15	13	y	ENSMUSG00000020476.15	Dbnl	chr11	protein_coding	drebrin-like
known_NIR_2944	chr11	5747175	5747284	+	5747175	5747287	A3SS	ENSMUST00000109845.8	known	0.31	19	42	19	42	y	0.32	15	32	15	32	y	0.46	26	30	26	30	y	0.40	34	52	34	52	y	0.31	27	59	27	59	y	0.42	15	21	15	21	y	0.30	18	43	18	43	y	0.50	18	18	18	18	y	0.30	14	33	14	33	y	0.38	25	41	25	41	y	0.42	22	31	22	31	y	0.26	15	42	15	42	y	ENSMUSG00000020476.15	Dbnl	chr11	protein_coding	drebrin-like
known_NIR_2945	chr11	57686620	57687138	-	57686620;57686999	57686852;57687138	ES	ENSMUST00000152790.8	known	0.65	15	8.0	15	8;8	y	0.38	8	13.0	8	19;7	y	0.43	8	10.5	8	10;11	y	0.59	12	8.5	12	10;7	y	0.39	14	22.0	14	24;20	y	0.50	8	8.0	8	6;10	y	0.34	13	25.5	13	31;20	y	0.52	14	13.0	14	10;16	y	0.47	10	11.5	10	12;11	y	0.52	21	19.5	21	22;17	y	0.51	16	15.5	16	15;16	y	0.21	6	23.0	6	21;25	y	ENSMUSG00000087165.8	2010001A14Rik	chr11	lncRNA	RIKEN cDNA 2010001A14 gene
known_NIR_2946	chr11	57686620;57686999	57686852;57692060	-	57686620;57687223	57687138;57692060	MXE	ENSMUST00000132378.2	known	0.14	4.0	24.5	8;0	15;34	n	0.55	10.5	8.5	19;2	8;9	y	0.46	6.5	7.5	10;3	8;7	y	0.23	5.5	18.0	10;1	12;24	n	0.43	12.0	16.0	24;0	14;18	n	0.23	3.5	12.0	6;1	8;16	n	0.43	16.5	21.5	31;2	13;30	y	0.27	6.0	16.0	10;2	14;18	y	0.32	7.0	15.0	12;2	10;20	y	0.30	12.0	27.5	22;2	21;34	y	0.28	8.0	21.0	15;1	16;26	n	0.42	11.0	15.5	21;1	6;25	n	ENSMUSG00000087165.8	2010001A14Rik	chr11	lncRNA	RIKEN cDNA 2010001A14 gene
known_NIR_2947	chr11	57686999	57692060	-	57686999;57687223	57687138;57692060	ES	ENSMUST00000152790.8	known	0.00	0	21.0	0	8;34	n	0.20	2	8.0	2	7;9	y	0.25	3	9.0	3	11;7	y	0.06	1	15.5	1	7;24	n	0.00	0	19.0	0	20;18	n	0.07	1	13.0	1	10;16	n	0.07	2	25.0	2	20;30	y	0.11	2	17.0	2	16;18	y	0.11	2	15.5	2	11;20	y	0.07	2	25.5	2	17;34	y	0.05	1	21.0	1	16;26	n	0.04	1	25.0	1	25;25	n	ENSMUSG00000087165.8	2010001A14Rik	chr11	lncRNA	RIKEN cDNA 2010001A14 gene
known_NIR_2948	chr11	57995174	58000382	+	57995034	58000382	A5SS	ENSMUST00000020822.12	known	0.47	19	21	19	21	y	0.41	11	16	11	16	y	0.35	19	35	19	35	y	0.51	21	20	21	20	y	0.49	25	26	25	26	y	0.56	9	7	9	7	y	0.46	23	27	23	27	y	0.38	6	10	6	10	y	0.37	13	22	13	22	y	0.35	13	24	13	24	y	0.41	12	17	12	17	y	0.45	20	24	20	24	y	ENSMUSG00000020515.14	Cnot8	chr11	protein_coding	CCR4-NOT transcription complex, subunit 8
known_NIR_2949	chr11	57995620	58000382	+	57995034	58000382	A5SS	ENSMUST00000020822.12	known	0.25	7	21	7	21	y	0.16	3	16	3	16	y	0.20	9	35	9	35	y	0.29	8	20	8	20	y	0.26	9	26	9	26	y	0.53	8	7	8	7	y	0.21	7	27	7	27	y	0.38	6	10	6	10	y	0.12	3	22	3	22	y	0.33	12	24	12	24	y	0.19	4	17	4	17	y	0.23	7	24	7	24	y	ENSMUSG00000020515.14	Cnot8	chr11	protein_coding	CCR4-NOT transcription complex, subunit 8
known_NIR_2950	chr11	57995620	58000382	+	57995174	58000382	A5SS	ENSMUST00000108843.8	known	0.27	7	19	7	19	y	0.21	3	11	3	11	y	0.32	9	19	9	19	y	0.28	8	21	8	21	y	0.26	9	25	9	25	y	0.47	8	9	8	9	y	0.23	7	23	7	23	y	0.50	6	6	6	6	y	0.19	3	13	3	13	y	0.48	12	13	12	13	y	0.25	4	12	4	12	y	0.26	7	20	7	20	y	ENSMUSG00000020515.14	Cnot8	chr11	protein_coding	CCR4-NOT transcription complex, subunit 8
known_NIR_2951	chr11	58006201	58008033	+	58006201	58008265	A3SS	ENSMUST00000020822.12	known	0.02	3	149	3	149	y	0.00	0	126	0	126	n	0.01	1	156	1	156	n	0.01	1	135	1	135	n	0.01	2	199	2	199	y	0.02	2	106	2	106	y	0.00	0	146	0	146	n	0.01	1	87	1	87	n	0.01	1	142	1	142	n	0.00	0	198	0	198	n	0.01	2	167	2	167	y	0.01	1	167	1	167	n	ENSMUSG00000020515.14	Cnot8	chr11	protein_coding	CCR4-NOT transcription complex, subunit 8
known_NIR_2952	chr11	58013201	58015758	-	58013204	58015758	A3SS	ENSMUST00000172035.8	known	0.53	16	14	16	14	y	0.30	7	16	7	16	y	0.39	12	19	12	19	y	0.16	3	16	3	16	y	0.27	10	27	10	27	y	0.16	3	16	3	16	y	0.32	7	15	7	15	y	0.59	13	9	13	9	y	0.28	7	18	7	18	y	0.50	18	18	18	18	y	0.33	9	18	9	18	y	0.35	7	13	7	13	y	ENSMUSG00000037275.15	Gemin5	chr11	protein_coding	gem nuclear organelle associated protein 5
known_NIR_2953	chr11	58028589	58029845	-	58028592	58029845	A3SS	ENSMUST00000172035.8	known	0.56	5	4	5	4	n	0.00	0	8	0	8	n	0.35	8	15	8	15	y	0.82	9	2	9	2	y	0.49	17	18	17	18	y	0.40	6	9	6	9	y	0.36	8	14	8	14	y	0.50	5	5	5	5	y	0.12	2	14	2	14	y	0.38	10	16	10	16	y	0.36	5	9	5	9	y	0.28	5	13	5	13	y	ENSMUSG00000037275.15	Gemin5	chr11	protein_coding	gem nuclear organelle associated protein 5
known_NIR_2954	chr11	58062847	58063859	+	58062668	58063859	A5SS	ENSMUST00000020820.2	known	0.00	0	111	0	111	n	0.01	1	111	1	111	n	0.03	3	100	3	100	y	0.01	1	118	1	118	n	0.03	5	143	5	143	y	0.02	1	54	1	54	n	0.04	5	110	5	110	y	0.03	2	76	2	76	y	0.02	2	97	2	97	y	0.08	11	131	11	131	y	0.01	1	119	1	119	n	0.03	4	133	4	133	y	ENSMUSG00000020514.9	Mrpl22	chr11	protein_coding	mitochondrial ribosomal protein L22
known_NIR_2955	chr11	58097002	58097145	+	58096945	58097145	A5SS	ENSMUST00000094169.11	known	0.54	7	6	7	6	y	0.00	0	2	0	2	n	0.33	3	6	3	6	n	0.18	2	9	2	9	y	0.67	2	1	2	1	n	0.00	0	1	0	1	n	0.42	5	7	5	7	y	0.40	2	3	2	3	n	1.00	8	0	8	0	n	0.20	1	4	1	4	n	0.50	2	2	2	2	n	0.30	3	7	3	7	y	ENSMUSG00000078853.9	Igtp	chr11	protein_coding	interferon gamma induced GTPase
known_NIR_2956	chr11	58105996	58110290	+	58105996;58107827	58107782;58110290	ES	ENSMUST00000209079.2	known	0.72	27	10.5	27	11;10	y	0.63	6	3.5	6	3;4	y	0.73	34	12.5	34	14;11	y	0.70	49	21.0	49	18;24	y	0.66	42	21.5	42	18;25	y	0.59	8	5.5	8	5;6	y	0.79	30	8.0	30	8;8	y	0.67	19	9.5	19	8;11	y	0.58	9	6.5	9	4;9	y	0.50	24	24.0	24	27;21	y	0.64	14	8.0	14	10;6	y	0.60	39	26.0	39	25;27	y	ENSMUSG00000069874.8	Irgm2	chr11	protein_coding	immunity-related GTPase family M member 2
known_NIR_2957	chr11	58198082	58198338	+	58198082	58198400	A3SS	ENSMUST00000153510.9	known	0.83	10	2	10	2	y	0.60	9	6	9	6	y	0.50	4	4	4	4	n	0.55	12	10	12	10	y	0.82	14	3	14	3	y	0.80	4	1	4	1	n	0.46	6	7	6	7	y	0.92	12	1	12	1	n	0.75	3	1	3	1	n	0.86	6	1	6	1	n	0.60	9	6	9	6	y	0.82	9	2	9	2	y	ENSMUSG00000037243.18	Zfp692	chr11	protein_coding	zinc finger protein 692
known_NIR_2958	chr11	58210416	58210693	-	58210416	58214096	A5SS	ENSMUST00000064786.12	known	1.00	10	0	10	0	n	1.00	6	0	6	0	n	0.93	14	1	14	1	n	1.00	8	0	8	0	n	1.00	17	0	17	0	n	0.91	10	1	10	1	n	1.00	14	0	14	0	n	1.00	5	0	5	0	n	0.67	2	1	2	1	n	1.00	7	0	7	0	n	1.00	3	0	3	0	n	0.81	17	4	17	4	y	ENSMUSG00000049755.15	Zfp672	chr11	protein_coding	zinc finger protein 672
known_NIR_2959	chr11	58210416	58210693	-	58210416	58221038	A5SS	ENSMUST00000186859.2	known	1.00	10	0	10	0	n	0.75	6	2	6	2	n	1.00	14	0	14	0	n	1.00	8	0	8	0	n	0.94	17	1	17	1	n	0.83	10	2	10	2	y	1.00	14	0	14	0	n	0.83	5	1	5	1	n	1.00	2	0	2	0	n	1.00	7	0	7	0	n	1.00	3	0	3	0	n	1.00	17	0	17	0	n	ENSMUSG00000049755.15	Zfp672	chr11	protein_coding	zinc finger protein 672
known_NIR_2960	chr11	58210416	58213426	-	58210416	58210693	A5SS&ES	ENSMUST00000108829.8	known	0.41	7	10	7	10	y	0.00	0	6	0	6	n	0.30	6	14	6	14	y	0.38	5	8	5	8	y	0.15	3	17	3	17	y	0.29	4	10	4	10	y	0.30	6	14	6	14	y	0.44	4	5	4	5	n	0.33	1	2	1	2	n	0.36	4	7	4	7	y	0.40	2	3	2	3	n	0.06	1	17	1	17	n	ENSMUSG00000049755.15	Zfp672	chr11	protein_coding	zinc finger protein 672
known_NIR_2961	chr11	58210416	58213426	-	58210780	58213426	3pMXE	ENSMUST00000135097.8	known	0.33	7	14	7	14	y	0.00	0	10	0	10	n	0.24	6	19	6	19	y	0.20	5	20	5	20	y	0.09	3	29	3	29	y	0.21	4	15	4	15	y	0.18	6	28	6	28	y	0.36	4	7	4	7	y	0.08	1	11	1	11	n	0.12	4	28	4	28	y	0.11	2	17	2	17	y	0.05	1	21	1	21	n	ENSMUSG00000049755.15	Zfp672	chr11	protein_coding	zinc finger protein 672
known_NIR_2962	chr11	58210416;58210780	58210693;58213426	-	58210416	58213426	cassetteExon	ENSMUST00000057836.12	known	0.63	12.0	7	10;14	7	y	1.00	8.0	0	6;10	0	n	0.73	16.5	6	14;19	6	y	0.74	14.0	5	8;20	5	y	0.88	23.0	3	17;29	3	y	0.76	12.5	4	10;15	4	y	0.78	21.0	6	14;28	6	y	0.60	6.0	4	5;7	4	y	0.87	6.5	1	2;11	1	n	0.81	17.5	4	7;28	4	y	0.83	10.0	2	3;17	2	y	0.95	19.0	1	17;21	1	n	ENSMUSG00000049755.15	Zfp672	chr11	protein_coding	zinc finger protein 672
known_NIR_2963	chr11	58210780	58213426	-	58210780	58213395	A5SS	ENSMUST00000108829.8	known	0.58	14	10	14	10	y	0.36	10	18	10	18	y	0.63	19	11	19	11	y	0.77	20	6	20	6	y	0.49	29	30	29	30	y	0.60	15	10	15	10	y	0.64	28	16	28	16	y	0.35	7	13	7	13	y	0.58	11	8	11	8	y	0.51	28	27	28	27	y	0.53	17	15	17	15	y	0.55	21	17	21	17	y	ENSMUSG00000049755.15	Zfp672	chr11	protein_coding	zinc finger protein 672
known_NIR_2964	chr11	58213555	58213681	-	58213555	58214096	A5SS	ENSMUST00000057836.12	known	0.00	0	26	0	26	n	0.11	4	32	4	32	y	0.05	2	36	2	36	y	0.14	4	24	4	24	y	0.12	6	43	6	43	y	0.00	0	18	0	18	n	0.12	5	37	5	37	y	0.00	0	32	0	32	n	0.21	4	15	4	15	y	0.13	7	48	7	48	y	0.17	6	29	6	29	y	0.05	2	38	2	38	y	ENSMUSG00000049755.15	Zfp672	chr11	protein_coding	zinc finger protein 672
known_NIR_2965	chr11	58221618	58222080	+	58221628	58222080	A5SS	ENSMUST00000116376.9	known	0.77	10	3	10	3	y	0.73	8	3	8	3	y	0.85	11	2	11	2	y	0.40	4	6	4	6	y	0.85	17	3	17	3	y	0.57	8	6	8	6	y	0.83	24	5	24	5	y	0.85	11	2	11	2	y	0.53	9	8	9	8	y	0.69	18	8	18	8	y	0.73	8	3	8	3	y	0.76	25	8	25	8	y	ENSMUSG00000013646.18	Sh3bp5l	chr11	protein_coding	SH3 binding domain protein 5 like
known_NIR_2966	chr11	58221941	58222080	+	58221618	58222080	A5SS	ENSMUST00000073128.7	known	0.09	1	10	1	10	n	0.43	6	8	6	8	y	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	17	0	17	n	0.11	1	8	1	8	n	0.00	0	24	0	24	n	0.08	1	11	1	11	n	0.18	2	9	2	9	y	0.00	0	18	0	18	n	0.00	0	8	0	8	n	0.04	1	25	1	25	n	ENSMUSG00000013646.18	Sh3bp5l	chr11	protein_coding	SH3 binding domain protein 5 like
known_NIR_2967	chr11	58221941	58222080	+	58221628	58222080	A5SS	ENSMUST00000116376.9	known	0.25	1	3	1	3	n	0.67	6	3	6	3	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.20	2	8	2	8	y	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.11	1	8	1	8	n	ENSMUSG00000013646.18	Sh3bp5l	chr11	protein_coding	SH3 binding domain protein 5 like
known_NIR_2968	chr11	5851814	5851940	-	5851814	5852085	A5SS	ENSMUST00000109823.9	known	0.00	0	188	0	188	n	0.01	3	210	3	210	y	0.00	0	17	0	17	n	0.00	0	170	0	170	n	0.01	3	326	3	326	y	0.00	0	12	0	12	n	0.01	1	140	1	140	n	0.00	0	32	0	32	n	0.01	1	137	1	137	n	0.00	1	375	1	375	n	0.00	0	183	0	183	n	0.00	0	214	0	214	n	ENSMUSG00000041798.16	Gck	chr11	protein_coding	glucokinase
known_NIR_2969	chr11	58873049;58878506	58878459;58879551	+	58873049	58879551	cassetteExon	ENSMUST00000108809.8	known	0.17	3.5	17	0;7	17	n	0.14	3.0	19	2;4	19	y	0.24	4.0	13	0;8	13	n	0.08	2.0	23	0;4	23	n	0.07	2.0	26	3;1	26	n	0.00	0.0	9	0;0	9	n	0.27	7.0	19	4;10	19	y	0.19	2.5	11	0;5	11	n	0.15	2.0	11	1;3	11	n	0.09	2.5	26	2;3	26	y	0.08	1.5	17	1;2	17	n	0.09	2.5	24	1;4	24	n	ENSMUSG00000020455.17	Trim11	chr11	protein_coding	tripartite motif-containing 11
known_NIR_2970	chr11	58879573	58879655	+	58879573	58879662	A3SS	ENSMUST00000108809.8	known	1.00	20	0	20	0	n	0.81	22	5	22	5	y	1.00	21	0	21	0	n	1.00	28	0	28	0	n	1.00	37	0	37	0	n	1.00	17	0	17	0	n	1.00	26	0	26	0	n	1.00	13	0	13	0	n	1.00	17	0	17	0	n	1.00	31	0	31	0	n	1.00	26	0	26	0	n	0.89	32	4	32	4	y	ENSMUSG00000020455.17	Trim11	chr11	protein_coding	tripartite motif-containing 11
known_NIR_2971	chr11	58906304	58911283	-	58901362	58911283	A3SS	ENSMUST00000238536.2	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.63	41	24	41	24	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061462.19	Obscn	chr11	protein_coding	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF
known_NIR_2972	chr11	58934979	58935640	-	58934979	58940251	A5SS	ENSMUST00000238536.2	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.05	2	41	2	41	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061462.19	Obscn	chr11	protein_coding	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF
known_NIR_2973	chr11	58937133	58940251	-	58934979	58940251	A3SS	ENSMUST00000238536.2	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.11	5	41	5	41	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061462.19	Obscn	chr11	protein_coding	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF
known_NIR_2974	chr11	59093485	59094998	+	59093485	59095001	A3SS	ENSMUST00000108786.8	known	0.54	58	49	58	49	y	0.57	58	44	58	44	y	0.57	78	60	78	60	y	0.50	51	52	51	52	y	0.58	63	46	63	46	y	0.62	47	29	47	29	y	0.58	76	55	76	55	y	0.51	38	36	38	36	y	0.56	51	40	51	40	y	0.54	70	59	70	59	y	0.57	68	51	68	51	y	0.54	56	48	56	48	y	ENSMUSG00000036860.15	Mrpl55	chr11	protein_coding	mitochondrial ribosomal protein L55
known_NIR_2975	chr11	59093545	59094998	+	59093485	59094998	A5SS	ENSMUST00000108787.9	known	0.00	0	58	0	58	n	0.09	6	58	6	58	y	0.04	3	78	3	78	y	0.11	6	51	6	51	y	0.10	7	63	7	63	y	0.00	0	47	0	47	n	0.08	7	76	7	76	y	0.16	7	38	7	38	y	0.04	2	51	2	51	y	0.12	10	70	10	70	y	0.09	7	68	7	68	y	0.08	5	56	5	56	y	ENSMUSG00000036860.15	Mrpl55	chr11	protein_coding	mitochondrial ribosomal protein L55
known_NIR_2976	chr11	59095081	59095382	+	59095081	59095361	A3SS	ENSMUST00000108786.8	known	0.81	89	21	89	21	y	0.80	82	21	82	21	y	0.80	113	28	113	28	y	0.84	97	18	97	18	y	0.75	94	31	94	31	y	0.84	78	15	78	15	y	0.83	119	24	119	24	y	0.85	58	10	58	10	y	0.73	61	23	61	23	y	0.79	116	30	116	30	y	0.80	126	32	126	32	y	0.79	109	29	109	29	y	ENSMUSG00000036860.15	Mrpl55	chr11	protein_coding	mitochondrial ribosomal protein L55
known_NIR_2977	chr11	59104349	59118999	-	59104349	59118702	5pMXE	ENSMUST00000163300.8	known	0.98	375	9	375	9	y	0.97	309	8	309	8	y	0.97	623	22	623	22	y	0.97	452	14	452	14	y	0.96	579	22	579	22	y	0.98	379	6	379	6	y	0.98	488	8	488	8	y	0.97	366	12	366	12	y	0.97	327	11	327	11	y	0.97	450	12	450	12	y	0.97	311	9	311	9	y	0.98	366	6	366	6	y	ENSMUSG00000048076.15	Arf1	chr11	protein_coding	ADP-ribosylation factor 1
known_NIR_2978	chr11	5922888;5926893	5926765;5929673	-	5922888	5929673	cassetteExon	ENSMUST00000109813.9	known	0.00	0.0	5	0;0	5	n	0.00	0.0	15	0;0	15	n	0.24	3.5	11	6;1	11	n	0.33	0.5	1	1;0	1	n	0.19	5.5	24	8;3	24	y	0.00	0.0	3	0;0	3	n	0.13	2.0	13	4;0	13	n	0.08	0.5	6	0;1	6	n	0.33	1.0	2	1;1	2	n	0.11	2.0	16	2;2	16	y	0.12	1.0	7	1;1	7	n	0.05	0.5	9	0;1	9	n	ENSMUSG00000057897.15	Camk2b	chr11	protein_coding	calcium/calmodulin-dependent protein kinase II, beta
known_NIR_2979	chr11	5927940	5929673	-	5922888	5929673	A3SS	ENSMUST00000109813.9	known	0.17	1	5	1	5	n	0.00	0	15	0	15	n	0.35	6	11	6	11	y	0.50	1	1	1	1	n	0.14	4	24	4	24	y	0.00	0	3	0	3	n	0.19	3	13	3	13	y	0.14	1	6	1	6	n	0.00	0	2	0	2	n	0.16	3	16	3	16	y	0.36	4	7	4	7	y	0.00	0	9	0	9	n	ENSMUSG00000057897.15	Camk2b	chr11	protein_coding	calcium/calmodulin-dependent protein kinase II, beta
known_NIR_2980	chr11	5929721	5932501	-	5929721;5931114	5931070;5932501	ES	ENSMUST00000109813.9	known	1.00	8	0.0	8	0;0	n	0.97	15	0.5	15	1;0	n	0.96	22	1.0	22	1;1	n	1.00	3	0.0	3	0;0	n	0.97	30	1.0	30	1;1	n	1.00	4	0.0	4	0;0	n	0.80	16	4.0	16	3;5	y	1.00	8	0.0	8	0;0	n	1.00	8	0.0	8	0;0	n	1.00	25	0.0	25	0;0	n	0.88	14	2.0	14	2;2	y	1.00	14	0.0	14	0;0	n	ENSMUSG00000057897.15	Camk2b	chr11	protein_coding	calcium/calmodulin-dependent protein kinase II, beta
known_NIR_2981	chr11	59298059	59319167	-	59312475	59319167	A3SS&ES	ENSMUST00000010038.10	known	0.00	0	279	0	279	n	0.00	0	233	0	233	n	0.01	2	166	2	166	y	0.00	0	281	0	281	n	0.00	0	359	0	359	n	0.00	0	107	0	107	n	0.00	0	281	0	281	n	0.00	0	128	0	128	n	0.00	0	211	0	211	n	0.00	0	338	0	338	n	0.00	0	261	0	261	n	0.00	0	233	0	233	n	ENSMUSG00000009894.16	Snap47	chr11	protein_coding	synaptosomal-associated protein, 47
known_NIR_2982	chr11	5932761	5938101	-	5937131	5938101	A3SS&ES	ENSMUST00000109813.9	known	1.00	5	0	5	0	n	1.00	11	0	11	0	n	1.00	28	0	28	0	n	1.00	5	0	5	0	n	1.00	21	0	21	0	n	1.00	5	0	5	0	n	0.88	15	2	15	2	y	1.00	9	0	9	0	n	1.00	6	0	6	0	n	1.00	10	0	10	0	n	1.00	6	0	6	0	n	1.00	11	0	11	0	n	ENSMUSG00000057897.15	Camk2b	chr11	protein_coding	calcium/calmodulin-dependent protein kinase II, beta
known_NIR_2983	chr11	59329339	59340619	-	59329339	59333618	A5SS&ES	ENSMUST00000156146.8	known	0.00	0	9	0	9	n	1.00	1	0	1	0	n	0.00	0	7	0	7	n	0.06	1	16	1	16	n	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.21	3	11	3	11	y	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.11	2	16	2	16	y	0.00	0	6	0	6	n	0.00	0	14	0	14	n	ENSMUSG00000009894.16	Snap47	chr11	protein_coding	synaptosomal-associated protein, 47
known_NIR_2984	chr11	59329339	59340619	-	59329339	59340741	A5SS	ENSMUST00000010038.10	known	0.00	0	104	0	104	n	0.01	1	91	1	91	n	0.00	0	86	0	86	n	0.01	1	136	1	136	n	0.01	1	121	1	121	n	0.00	0	78	0	78	n	0.03	3	117	3	117	y	0.00	0	69	0	69	n	0.00	0	90	0	90	n	0.01	2	154	2	154	y	0.00	0	99	0	99	n	0.00	0	109	0	109	n	ENSMUSG00000009894.16	Snap47	chr11	protein_coding	synaptosomal-associated protein, 47
known_NIR_2985	chr11	59329339;59333667	59333618;59340741	-	59329339	59340741	cassetteExon	ENSMUST00000010038.10	known	0.08	9.0	104	9;9	104	y	0.01	0.5	91	0;1	91	n	0.06	5.5	86	7;4	86	y	0.08	12.5	136	16;9	136	y	0.04	5.0	121	6;4	121	y	0.07	5.5	78	6;5	78	y	0.06	7.5	117	11;4	117	y	0.12	9.5	69	10;9	69	y	0.14	14.5	90	16;13	90	y	0.08	14.0	154	16;12	154	y	0.05	5.0	99	6;4	99	y	0.07	8.5	109	14;3	109	y	ENSMUSG00000009894.16	Snap47	chr11	protein_coding	synaptosomal-associated protein, 47
known_NIR_2986	chr11	59329339;59333738	59333618;59340741	-	59329339	59340741	cassetteExon	ENSMUST00000010038.10	known	0.04	4.5	104	9;0	104	n	0.00	0.0	91	0;0	91	n	0.04	4.0	86	7;1	86	n	0.06	8.0	136	16;0	136	n	0.04	4.5	121	6;3	121	y	0.04	3.0	78	6;0	78	n	0.05	6.5	117	11;2	117	y	0.07	5.5	69	10;1	69	n	0.09	9.0	90	16;2	90	y	0.05	8.5	154	16;1	154	n	0.03	3.0	99	6;0	99	n	0.08	9.0	109	14;4	109	y	ENSMUSG00000009894.16	Snap47	chr11	protein_coding	synaptosomal-associated protein, 47
known_NIR_2987	chr11	59333667	59340741	-	59333738	59340741	A3SS	ENSMUST00000156146.8	known	1.00	9	0	9	0	n	1.00	1	0	1	0	n	0.80	4	1	4	1	n	1.00	9	0	9	0	n	0.57	4	3	4	3	n	1.00	5	0	5	0	n	0.67	4	2	4	2	n	0.90	9	1	9	1	n	0.87	13	2	13	2	y	0.92	12	1	12	1	n	1.00	4	0	4	0	n	0.43	3	4	3	4	n	ENSMUSG00000009894.16	Snap47	chr11	protein_coding	synaptosomal-associated protein, 47
known_NIR_2988	chr11	59344471	59344654	+	59344471	59344618	A3SS	ENSMUST00000108777.10	known	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.08	2	24	2	24	y	0.17	1	5	1	5	n	0.17	2	10	2	10	y	0.08	1	11	1	11	n	0.12	1	7	1	7	n	0.07	1	13	1	13	n	0.13	2	13	2	13	y	0.07	1	13	1	13	n	ENSMUSG00000036819.15	Jmjd4	chr11	protein_coding	jumonji domain containing 4
known_NIR_2989	chr11	59344471	59344704	+	59344471	59344618	A3SS	ENSMUST00000108777.10	known	0.37	7	12	7	12	y	0.29	5	12	5	12	y	0.19	3	13	3	13	y	0.38	6	10	6	10	y	0.35	13	24	13	24	y	0.50	5	5	5	5	y	0.50	10	10	10	10	y	0.35	6	11	6	11	y	0.59	10	7	10	7	y	0.38	8	13	8	13	y	0.38	8	13	8	13	y	0.38	8	13	8	13	y	ENSMUSG00000036819.15	Jmjd4	chr11	protein_coding	jumonji domain containing 4
known_NIR_2990	chr11	59344471	59344704	+	59344471	59344654	A3SS	ENSMUST00000045279.13	known	1.00	7	0	7	0	n	1.00	5	0	5	0	n	1.00	3	0	3	0	n	1.00	6	0	6	0	n	0.87	13	2	13	2	y	0.83	5	1	5	1	n	0.83	10	2	10	2	y	0.86	6	1	6	1	n	0.91	10	1	10	1	n	0.89	8	1	8	1	n	0.80	8	2	8	2	y	0.89	8	1	8	1	n	ENSMUSG00000036819.15	Jmjd4	chr11	protein_coding	jumonji domain containing 4
known_NIR_2991	chr11	59393926	59394503	-	59393926	59394210	A5SS	ENSMUST00000013262.15	known	0.00	0	20	0	20	n	0.06	1	17	1	17	n	0.09	4	39	4	39	y	0.09	3	30	3	30	y	0.08	3	35	3	35	y	0.00	0	28	0	28	n	0.00	0	29	0	29	n	0.07	2	27	2	27	y	0.04	1	22	1	22	n	0.02	1	47	1	47	n	0.00	0	22	0	22	n	0.00	0	33	0	33	n	ENSMUSG00000020472.15	Zkscan17	chr11	protein_coding	zinc finger with KRAB and SCAN domains 17
known_NIR_2992	chr11	59394589	59394974	-	59394636	59394974	A3SS	ENSMUST00000013262.15	known	0.13	2	13	2	13	y	0.20	3	12	3	12	y	0.08	2	22	2	22	y	0.12	4	30	4	30	y	0.12	3	21	3	21	y	0.00	0	17	0	17	n	0.15	5	28	5	28	y	0.00	0	14	0	14	n	0.20	2	8	2	8	y	0.19	6	26	6	26	y	0.12	2	15	2	15	y	0.06	1	17	1	17	n	ENSMUSG00000020472.15	Zkscan17	chr11	protein_coding	zinc finger with KRAB and SCAN domains 17
known_NIR_2993	chr11	59398482	59398657	+	59398138	59398657	A5SS	ENSMUST00000138763.8	known	0.18	2	9	2	9	y	0.47	7	8	7	8	y	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.14	3	19	3	19	y	0.75	3	1	3	1	n	0.16	3	16	3	16	y	0.50	4	4	4	4	n	0.28	5	13	5	13	y	0.06	1	16	1	16	n	0.13	2	13	2	13	y	0.37	10	17	10	17	y	ENSMUSG00000072893.13	4933439C10Rik	chr11	lncRNA	RIKEN cDNA 4933439C10 gene
known_NIR_2994	chr11	59622418	59626770	+	59622418	59626656	A3SS	ENSMUST00000072031.13	known	0.04	4	105	4	105	y	0.00	0	89	0	89	n	0.02	3	133	3	133	y	0.04	4	87	4	87	y	0.02	4	168	4	168	y	0.03	2	68	2	68	y	0.03	4	136	4	136	y	0.04	3	76	3	76	y	0.03	3	87	3	87	y	0.02	3	124	3	124	y	0.03	3	103	3	103	y	0.03	4	143	4	143	y	ENSMUSG00000005417.18	Mprip	chr11	protein_coding	myosin phosphatase Rho interacting protein
known_NIR_2995	chr11	59628408	59631946	+	59628054	59631946	A5SS	ENSMUST00000072031.13	known	0.95	110	6	110	6	y	0.97	97	3	97	3	y	0.78	65	18	65	18	y	0.96	92	4	92	4	y	0.93	148	11	148	11	y	0.88	60	8	60	8	y	0.82	99	21	99	21	y	0.92	96	8	96	8	y	0.92	98	9	98	9	y	0.91	122	12	122	12	y	0.88	88	12	88	12	y	0.96	132	6	132	6	y	ENSMUSG00000005417.18	Mprip	chr11	protein_coding	myosin phosphatase Rho interacting protein
known_NIR_2996	chr11	59632087	59634597	+	59632087;59632924	59632817;59634597	ES	ENSMUST00000072031.13	known	0.03	4	132.0	4	119;145	y	0.03	3	115.5	3	122;109	y	0.05	7	132.5	7	114;151	y	0.03	4	133.0	4	113;153	y	0.03	6	226.0	6	216;236	y	0.00	0	103.5	0	107;100	n	0.01	1	145.5	1	157;134	n	0.00	0	95.0	0	92;98	n	0.01	1	103.0	1	96;110	n	0.01	2	163.0	2	154;172	y	0.02	3	117.5	3	105;130	y	0.05	8	163.0	8	166;160	y	ENSMUSG00000005417.18	Mprip	chr11	protein_coding	myosin phosphatase Rho interacting protein
known_NIR_2997	chr11	59645935	59648350	+	59645935	59655206	A3SS	ENSMUST00000072031.13	known	0.01	1	162	1	162	n	0.03	4	152	4	152	y	0.02	3	170	3	170	y	0.01	2	166	2	166	y	0.03	7	253	7	253	y	0.04	5	122	5	122	y	0.04	10	215	10	215	y	0.02	2	124	2	124	y	0.01	1	116	1	116	n	0.01	3	197	3	197	y	0.02	3	168	3	168	y	0.01	1	182	1	182	n	ENSMUSG00000005417.18	Mprip	chr11	protein_coding	myosin phosphatase Rho interacting protein
known_NIR_2998	chr11	59645935	59655206	+	59645935;59652153	59648350;59655206	ES	ENSMUST00000066330.15	known	0.96	162	6.5	162	1;12	n	0.97	152	4.0	152	4;4	y	0.97	170	5.0	170	3;7	y	0.98	166	3.0	166	2;4	y	0.96	253	11.0	253	7;15	y	0.97	122	4.0	122	5;3	y	0.96	215	8.0	215	10;6	y	0.98	124	2.0	124	2;2	y	0.98	116	2.5	116	1;4	n	0.98	197	3.0	197	3;3	y	0.98	168	3.0	168	3;3	y	0.98	182	4.5	182	1;8	n	ENSMUSG00000005417.18	Mprip	chr11	protein_coding	myosin phosphatase Rho interacting protein
known_NIR_2999	chr11	59652153	59655206	+	59645935	59655206	A5SS	ENSMUST00000072031.13	known	0.07	12	162	12	162	y	0.03	4	152	4	152	y	0.04	7	170	7	170	y	0.02	4	166	4	166	y	0.06	15	253	15	253	y	0.02	3	122	3	122	y	0.03	6	215	6	215	y	0.02	2	124	2	124	y	0.03	4	116	4	116	y	0.01	3	197	3	197	y	0.02	3	168	3	168	y	0.04	8	182	8	182	y	ENSMUSG00000005417.18	Mprip	chr11	protein_coding	myosin phosphatase Rho interacting protein
known_NIR_3000	chr11	59662528;59663043	59662978;59666342	+	59662528	59666342	cassetteExon	ENSMUST00000072031.13	known	0.88	182.5	26	174;191	26	y	0.91	201.0	20	183;219	20	y	0.85	176.5	32	143;210	32	y	0.83	130.5	27	118;143	27	y	0.87	200.0	30	185;215	30	y	0.77	75.5	23	76;75	23	y	0.86	221.5	35	208;235	35	y	0.82	97.5	21	94;101	21	y	0.79	120.5	33	112;129	33	y	0.83	168.0	34	157;179	34	y	0.75	141.5	48	131;152	48	y	0.84	177.5	34	165;190	34	y	ENSMUSG00000005417.18	Mprip	chr11	protein_coding	myosin phosphatase Rho interacting protein
known_NIR_3001	chr11	59686401	59686576	-	59686090	59686576	A3SS	ENSMUST00000102697.10	known	0.12	6	42	6	42	y	0.23	11	37	11	37	y	0.26	23	66	23	66	y	0.17	11	55	11	55	y	0.19	13	55	13	55	y	0.14	3	19	3	19	y	0.15	11	61	11	61	y	0.10	3	26	3	26	y	0.14	9	55	9	55	y	0.11	11	87	11	87	y	0.16	7	38	7	38	y	0.22	16	58	16	58	y	ENSMUSG00000032633.13	Flcn	chr11	protein_coding	folliculin
known_NIR_3002	chr11	59698741	59700486	-	59700311	59700486	3pMXE	ENSMUST00000151453.2	known	0.91	20	2	20	2	y	1.00	21	0	21	0	n	1.00	65	0	65	0	n	0.94	46	3	46	3	y	0.91	62	6	62	6	y	1.00	11	0	11	0	n	0.92	35	3	35	3	y	0.90	28	3	28	3	y	0.93	38	3	38	3	y	0.93	50	4	50	4	y	1.00	38	0	38	0	n	0.95	37	2	37	2	y	ENSMUSG00000032633.13	Flcn	chr11	protein_coding	folliculin
known_NIR_3003	chr11	59698741	59700526	-	59698741	59700486	A5SS	ENSMUST00000102697.10	known	0.05	1	20	1	20	n	0.00	0	21	0	21	n	0.03	2	65	2	65	y	0.00	0	46	0	46	n	0.02	1	62	1	62	n	0.15	2	11	2	11	y	0.08	3	35	3	35	y	0.03	1	28	1	28	n	0.00	0	38	0	38	n	0.00	0	50	0	50	n	0.07	3	38	3	38	y	0.00	0	37	0	37	n	ENSMUSG00000032633.13	Flcn	chr11	protein_coding	folliculin
known_NIR_3004	chr11	59698741;59700311	59700191;59700486	-	59698741	59700486	cassetteExon	ENSMUST00000102697.10	known	0.13	3.0	20	4;2	20	y	0.05	1.0	21	2;0	21	n	0.01	0.5	65	1;0	65	n	0.07	3.5	46	4;3	46	y	0.05	3.5	62	1;6	62	n	0.00	0.0	11	0;0	11	n	0.07	2.5	35	2;3	35	y	0.07	2.0	28	1;3	28	n	0.08	3.5	38	4;3	38	y	0.05	2.5	50	1;4	50	n	0.03	1.0	38	2;0	38	n	0.04	1.5	37	1;2	37	n	ENSMUSG00000032633.13	Flcn	chr11	protein_coding	folliculin
known_NIR_3005	chr11	59718851	59723710	-	59718851;59721065	59720973;59723710	ES	ENSMUST00000019517.10	known	0.00	0	108.5	0	117;100	n	0.00	0	78.5	0	74;83	n	0.01	1	113.0	1	115;111	n	0.00	0	118.0	0	136;100	n	0.01	1	133.0	1	134;132	n	0.00	0	66.5	0	73;60	n	0.01	1	110.5	1	113;108	n	0.00	0	62.0	0	61;63	n	0.00	0	72.5	0	61;84	n	0.00	0	121.0	0	119;123	n	0.02	2	80.5	2	87;74	y	0.00	0	118.5	0	114;123	n	ENSMUSG00000019373.12	Cops3	chr11	protein_coding	COP9 signalosome subunit 3
known_NIR_3006	chr11	59721133	59723710	-	59721065	59723710	A3SS	ENSMUST00000019517.10	known	0.02	2	100	2	100	y	0.02	2	83	2	83	y	0.02	2	111	2	111	y	0.06	6	100	6	100	y	0.05	7	132	7	132	y	0.05	3	60	3	60	y	0.02	2	108	2	108	y	0.02	1	63	1	63	n	0.00	0	84	0	84	n	0.04	5	123	5	123	y	0.00	0	74	0	74	n	0.04	5	123	5	123	y	ENSMUSG00000019373.12	Cops3	chr11	protein_coding	COP9 signalosome subunit 3
known_NIR_3007	chr11	59739198	59743617	+	59730582	59743617	A5SS	ENSMUST00000149076.8	known	0.63	17	10	17	10	y	0.68	19	9	19	9	y	0.56	19	15	19	15	y	0.67	14	7	14	7	y	0.62	15	9	15	9	y	0.73	8	3	8	3	y	0.78	18	5	18	5	y	0.70	7	3	7	3	y	0.71	10	4	10	4	y	0.77	24	7	24	7	y	0.61	11	7	11	7	y	0.79	26	7	26	7	y	ENSMUSG00000032615.15	Nt5m	chr11	protein_coding	5',3'-nucleotidase, mitochondrial
known_NIR_3008	chr11	59739310	59743617	+	59730582	59743617	A5SS	ENSMUST00000149076.8	known	0.47	9	10	9	10	y	0.55	11	9	11	9	y	0.40	10	15	10	15	y	0.50	7	7	7	7	y	0.55	11	9	11	9	y	0.73	8	3	8	3	y	0.69	11	5	11	5	y	0.77	10	3	10	3	y	0.71	10	4	10	4	y	0.59	10	7	10	7	y	0.42	5	7	5	7	y	0.36	4	7	4	7	y	ENSMUSG00000032615.15	Nt5m	chr11	protein_coding	5',3'-nucleotidase, mitochondrial
known_NIR_3009	chr11	59739310	59743617	+	59739198	59743617	A5SS	ENSMUST00000102695.4	known	0.35	9	17	9	17	y	0.37	11	19	11	19	y	0.34	10	19	10	19	y	0.33	7	14	7	14	y	0.42	11	15	11	15	y	0.50	8	8	8	8	y	0.38	11	18	11	18	y	0.59	10	7	10	7	y	0.50	10	10	10	10	y	0.29	10	24	10	24	y	0.31	5	11	5	11	y	0.13	4	26	4	26	y	ENSMUSG00000032615.15	Nt5m	chr11	protein_coding	5',3'-nucleotidase, mitochondrial
known_NIR_3010	chr11	59862084	59864894	-	59862084	59874269	A5SS	ENSMUST00000147422.8	known	1.00	1709	1	1709	1	n	1.00	1807	4	1807	4	y	1.00	1395	3	1395	3	y	1.00	1546	0	1546	0	n	1.00	2106	2	2106	2	y	1.00	995	2	995	2	y	1.00	1947	2	1947	2	y	1.00	1005	2	1005	2	y	1.00	1678	3	1678	3	y	1.00	2394	0	2394	0	n	1.00	2143	0	2143	0	n	1.00	2288	5	2288	5	y	ENSMUSG00000000301.17	Pemt	chr11	protein_coding	phosphatidylethanolamine N-methyltransferase
known_NIR_3011	chr11	59867810	59874269	-	59862084	59874269	A3SS	ENSMUST00000147422.8	known	1.00	1431	1	1431	1	n	1.00	1498	4	1498	4	y	1.00	1313	3	1313	3	y	1.00	1412	0	1412	0	n	1.00	1851	2	1851	2	y	1.00	870	2	870	2	y	1.00	1670	2	1670	2	y	1.00	885	2	885	2	y	1.00	1518	3	1518	3	y	1.00	2030	0	2030	0	n	1.00	1744	0	1744	0	n	1.00	2085	5	2085	5	y	ENSMUSG00000000301.17	Pemt	chr11	protein_coding	phosphatidylethanolamine N-methyltransferase
known_NIR_3012	chr11	59874384	59911937	-	59874384	59922539	A5SS	ENSMUST00000102692.10	known	0.01	7	1328	7	1328	y	0.00	0	1257	0	1257	n	0.00	3	1185	3	1185	y	0.00	2	1290	2	1290	y	0.00	4	1755	4	1755	y	0.00	2	870	2	870	y	0.00	4	1518	4	1518	y	0.00	0	876	0	876	n	0.00	5	1350	5	1350	y	0.01	9	1771	9	1771	y	0.00	5	1574	5	1574	y	0.00	3	1839	3	1839	y	ENSMUSG00000000301.17	Pemt	chr11	protein_coding	phosphatidylethanolamine N-methyltransferase
known_NIR_3013	chr11	59874384	59911937	-	59874384	59937166	A5SS	ENSMUST00000148512.2	known	0.88	7	1	7	1	n	0.00	0	1	0	1	n	0.75	3	1	3	1	n	1.00	2	0	2	0	n	0.50	4	4	4	4	n	0.67	2	1	2	1	n	0.67	4	2	4	2	n	-	-	-	-	-	-	0.56	5	4	5	4	n	0.90	9	1	9	1	n	0.45	5	6	5	6	y	0.38	3	5	3	5	n	ENSMUSG00000000301.17	Pemt	chr11	protein_coding	phosphatidylethanolamine N-methyltransferase
known_NIR_3014	chr11	59874384	59937166	-	59874384	59922539	A5SS&ES	ENSMUST00000000310.14	known	0.00	1	1328	1	1328	n	0.00	1	1257	1	1257	n	0.00	1	1185	1	1185	n	0.00	0	1290	0	1290	n	0.00	4	1755	4	1755	y	0.00	1	870	1	870	n	0.00	2	1518	2	1518	y	0.00	0	876	0	876	n	0.00	4	1350	4	1350	y	0.00	1	1771	1	1771	n	0.00	6	1574	6	1574	y	0.00	5	1839	5	1839	y	ENSMUSG00000000301.17	Pemt	chr11	protein_coding	phosphatidylethanolamine N-methyltransferase
known_NIR_3015	chr11	59874384	59937166	-	59874384;59922646	59922539;59937166	ES	ENSMUST00000102693.9	known	0.00	1	668.0	1	1328;8	n	0.00	1	636.0	1	1257;15	n	0.00	1	599.5	1	1185;14	n	0.00	0	653.5	0	1290;17	n	0.00	4	883.0	4	1755;11	y	0.00	1	439.0	1	870;8	n	0.00	2	770.5	2	1518;23	y	0.00	0	442.5	0	876;9	n	0.01	4	679.5	4	1350;9	y	0.00	1	894.0	1	1771;17	n	0.01	6	799.0	6	1574;24	y	0.01	5	927.5	5	1839;16	y	ENSMUSG00000000301.17	Pemt	chr11	protein_coding	phosphatidylethanolamine N-methyltransferase
known_NIR_3016	chr11	59921339	59922539	-	59874384	59922539	A3SS	ENSMUST00000147422.8	known	0.00	0	1328	0	1328	n	0.00	0	1257	0	1257	n	0.00	0	1185	0	1185	n	0.00	0	1290	0	1290	n	0.00	0	1755	0	1755	n	0.00	0	870	0	870	n	0.00	0	1518	0	1518	n	0.00	0	876	0	876	n	0.00	1	1350	1	1350	n	0.00	0	1771	0	1771	n	0.00	5	1574	5	1574	y	0.00	0	1839	0	1839	n	ENSMUSG00000000301.17	Pemt	chr11	protein_coding	phosphatidylethanolamine N-methyltransferase
known_NIR_3017	chr11	59922646	59937166	-	59922646	59927648	5pMXE	ENSMUST00000102692.10	known	0.01	8	1316	8	1316	y	0.01	15	1255	15	1255	y	0.01	14	1396	14	1396	y	0.01	17	1312	17	1312	y	0.01	11	1749	11	1749	y	0.01	8	931	8	931	y	0.02	23	1474	23	1474	y	0.01	9	957	9	957	y	0.01	9	1352	9	1352	y	0.01	17	1925	17	1925	y	0.01	24	1646	24	1646	y	0.01	16	1812	16	1812	y	ENSMUSG00000000301.17	Pemt	chr11	protein_coding	phosphatidylethanolamine N-methyltransferase
known_NIR_3018	chr11	59922646	59937166	-	59922646	59937170	A5SS	ENSMUST00000000310.14	known	0.89	8	1	8	1	n	0.75	15	5	15	5	y	0.88	14	2	14	2	y	0.81	17	4	17	4	y	0.61	11	7	11	7	y	1.00	8	0	8	0	n	0.88	23	3	23	3	y	0.64	9	5	9	5	y	0.75	9	3	9	3	y	0.74	17	6	17	6	y	0.89	24	3	24	3	y	1.00	16	0	16	0	n	ENSMUSG00000000301.17	Pemt	chr11	protein_coding	phosphatidylethanolamine N-methyltransferase
known_NIR_3019	chr11	59922646	59937170	-	59922646	59927648	5pMXE	ENSMUST00000102692.10	known	0.00	1	1316	1	1316	n	0.00	5	1255	5	1255	y	0.00	2	1396	2	1396	y	0.00	4	1312	4	1312	y	0.00	7	1749	7	1749	y	0.00	0	931	0	931	n	0.00	3	1474	3	1474	y	0.01	5	957	5	957	y	0.00	3	1352	3	1352	y	0.00	6	1925	6	1925	y	0.00	3	1646	3	1646	y	0.00	0	1812	0	1812	n	ENSMUSG00000000301.17	Pemt	chr11	protein_coding	phosphatidylethanolamine N-methyltransferase
known_NIR_3020	chr11	60031196	60031478	+	60031196	60075922	A3SS	ENSMUST00000064190.13	known	0.50	4	4	4	4	n	0.88	7	1	7	1	n	0.70	7	3	7	3	y	0.69	9	4	9	4	y	0.79	11	3	11	3	y	1.00	10	0	10	0	n	0.62	8	5	8	5	y	-	-	-	-	-	-	0.80	8	2	8	2	y	0.79	11	3	11	3	y	0.89	16	2	16	2	y	0.92	12	1	12	1	n	ENSMUSG00000062115.16	Rai1	chr11	protein_coding	retinoic acid induced 1
known_NIR_3021	chr11	60031196	60031478	+	60031196	60084765	A3SS	ENSMUST00000149770.8	known	0.57	4	3	4	3	n	0.58	7	5	7	5	y	0.64	7	4	7	4	y	0.53	9	8	9	8	y	0.48	11	12	11	12	y	1.00	10	0	10	0	n	0.89	8	1	8	1	n	0.00	0	2	0	2	n	0.80	8	2	8	2	y	0.46	11	13	11	13	y	0.89	16	2	16	2	y	0.86	12	2	12	2	y	ENSMUSG00000062115.16	Rai1	chr11	protein_coding	retinoic acid induced 1
known_NIR_3022	chr11	60031196	60075922	+	60031196	60084765	A3SS	ENSMUST00000149770.8	known	0.57	4	3	4	3	n	0.17	1	5	1	5	n	0.43	3	4	3	4	n	0.33	4	8	4	8	y	0.20	3	12	3	12	y	-	-	-	-	-	-	0.83	5	1	5	1	n	0.00	0	2	0	2	n	0.50	2	2	2	2	n	0.19	3	13	3	13	y	0.50	2	2	2	2	n	0.33	1	2	1	2	n	ENSMUSG00000062115.16	Rai1	chr11	protein_coding	retinoic acid induced 1
known_NIR_3023	chr11	60031196	60084765	+	60031196;60081448	60075922;60084765	ES	ENSMUST00000064190.13	known	0.35	3	5.5	3	4;7	y	0.56	5	4.0	5	1;7	n	0.33	4	8.0	4	3;13	y	0.55	8	6.5	8	4;9	y	0.60	12	8.0	12	3;13	y	0.00	0	3.0	0	0;6	n	0.22	1	3.5	1	5;2	n	0.44	2	2.5	2	0;5	n	0.33	2	4.0	2	2;6	y	0.55	13	10.5	13	3;18	y	0.31	2	4.5	2	2;7	y	0.44	2	2.5	2	1;4	n	ENSMUSG00000062115.16	Rai1	chr11	protein_coding	retinoic acid induced 1
known_NIR_3024	chr11	60081448	60084765	+	60031196	60084765	A5SS	ENSMUST00000149770.8	known	0.70	7	3	7	3	y	0.58	7	5	7	5	y	0.76	13	4	13	4	y	0.53	9	8	9	8	y	0.52	13	12	13	12	y	1.00	6	0	6	0	n	0.67	2	1	2	1	n	0.71	5	2	5	2	n	0.75	6	2	6	2	n	0.58	18	13	18	13	y	0.78	7	2	7	2	n	0.67	4	2	4	2	n	ENSMUSG00000062115.16	Rai1	chr11	protein_coding	retinoic acid induced 1
known_NIR_3025	chr11	60096903	60096999	-	60096903	60097014	A5SS	ENSMUST00000134660.8	known	0.93	212	16	212	16	y	0.88	103	14	103	14	y	0.88	44	6	44	6	y	0.93	215	15	215	15	y	0.85	171	30	171	30	y	0.89	25	3	25	3	y	0.96	117	5	117	5	y	1.00	40	0	40	0	n	0.87	202	31	202	31	y	0.90	346	40	346	40	y	0.90	249	28	249	28	y	0.91	297	30	297	30	y	ENSMUSG00000020538.16	Srebf1	chr11	protein_coding	sterol regulatory element binding transcription factor 1
known_NIR_3026	chr11	60098083	60101162	-	60098083	60111279	A5SS	ENSMUST00000020846.8	known	0.86	155	25	155	25	y	0.84	76	14	76	14	y	0.25	15	44	15	44	y	0.85	195	35	195	35	y	0.71	110	46	110	46	y	0.42	11	15	11	15	y	0.55	43	35	43	35	y	0.50	21	21	21	21	y	0.87	184	27	184	27	y	0.87	295	45	295	45	y	0.91	243	24	243	24	y	0.86	241	38	241	38	y	ENSMUSG00000020538.16	Srebf1	chr11	protein_coding	sterol regulatory element binding transcription factor 1
known_NIR_3027	chr11	60098083	60113349	-	60098083	60101162	5pMXE	ENSMUST00000144942.2	known	0.03	5	155	5	155	y	0.00	0	76	0	76	n	0.29	6	15	6	15	y	0.05	10	195	10	195	y	0.05	6	110	6	110	y	0.31	5	11	5	11	y	0.09	4	43	4	43	y	0.30	9	21	9	21	y	0.04	8	184	8	184	y	0.03	8	295	8	295	y	0.03	8	243	8	243	y	0.05	12	241	12	241	y	ENSMUSG00000020538.16	Srebf1	chr11	protein_coding	sterol regulatory element binding transcription factor 1
known_NIR_3028	chr11	60098083	60113349	-	60098083	60111279	5pMXE	ENSMUST00000020846.8	known	0.17	5	25	5	25	y	0.00	0	14	0	14	n	0.12	6	44	6	44	y	0.22	10	35	10	35	y	0.12	6	46	6	46	y	0.25	5	15	5	15	y	0.10	4	35	4	35	y	0.30	9	21	9	21	y	0.23	8	27	8	27	y	0.15	8	45	8	45	y	0.25	8	24	8	24	y	0.24	12	38	12	38	y	ENSMUSG00000020538.16	Srebf1	chr11	protein_coding	sterol regulatory element binding transcription factor 1
known_NIR_3029	chr11	60121963;60123783	60123724;60132644	-	60121963	60132644	cassetteExon	ENSMUST00000095254.12	known	1.00	8.0	0	8;8	0	n	1.00	15.0	0	19;11	0	n	1.00	32.0	0	34;30	0	n	0.96	27.5	1	30;25	1	n	1.00	31.0	0	30;32	0	n	1.00	20.5	0	25;16	0	n	0.97	34.0	1	30;38	1	n	1.00	19.5	0	20;19	0	n	0.95	17.5	1	21;14	1	n	0.93	25.0	2	25;25	2	y	1.00	20.0	0	26;14	0	n	1.00	26.5	0	29;24	0	n	ENSMUSG00000000538.19	Tom1l2	chr11	protein_coding	target of myb1-like 2 (chicken)
known_NIR_3030	chr11	60123783	60132644	-	60123783	60129836	5pMXE	ENSMUST00000153920.2	known	1.00	8	0	8	0	n	1.00	11	0	11	0	n	1.00	30	0	30	0	n	1.00	25	0	25	0	n	1.00	32	0	32	0	n	1.00	16	0	16	0	n	0.86	38	6	38	6	y	1.00	19	0	19	0	n	1.00	14	0	14	0	n	1.00	25	0	25	0	n	1.00	14	0	14	0	n	1.00	24	0	24	0	n	ENSMUSG00000000538.19	Tom1l2	chr11	protein_coding	target of myb1-like 2 (chicken)
known_NIR_3031	chr11	60123783;60129898	60129836;60132644	-	60123783	60132644	cassetteExon	ENSMUST00000102683.11	known	0.00	0.0	8	0;0	8	n	0.00	0.0	11	0;0	11	n	0.00	0.0	30	0;0	30	n	0.00	0.0	25	0;0	25	n	0.00	0.0	32	0;0	32	n	0.00	0.0	16	0;0	16	n	0.13	5.5	38	6;5	38	y	0.00	0.0	19	0;0	19	n	0.00	0.0	14	0;0	14	n	0.00	0.0	25	0;0	25	n	0.00	0.0	14	0;0	14	n	0.00	0.0	24	0;0	24	n	ENSMUSG00000000538.19	Tom1l2	chr11	protein_coding	target of myb1-like 2 (chicken)
known_NIR_3032	chr11	60132171	60132644	-	60123783	60132644	A3SS	ENSMUST00000102683.11	known	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	30	0	30	n	0.04	1	25	1	25	n	0.00	0	32	0	32	n	0.00	0	16	0	16	n	0.10	4	38	4	38	y	0.05	1	19	1	19	n	0.00	0	14	0	14	n	0.00	0	25	0	25	n	0.12	2	14	2	14	y	0.08	2	24	2	24	y	ENSMUSG00000000538.19	Tom1l2	chr11	protein_coding	target of myb1-like 2 (chicken)
known_NIR_3033	chr11	60296703	60298120	-	60296682	60298120	A3SS	ENSMUST00000108721.9	known	0.19	6	26	6	26	y	0.14	8	50	8	50	y	0.02	1	48	1	48	n	0.24	9	28	9	28	y	0.16	15	81	15	81	y	0.10	3	28	3	28	y	0.12	8	57	8	57	y	0.03	1	31	1	31	n	0.16	7	37	7	37	y	0.09	5	49	5	49	y	0.10	4	36	4	36	y	0.12	12	87	12	87	y	ENSMUSG00000042709.16	Atpaf2	chr11	protein_coding	ATP synthase mitochondrial F1 complex assembly factor 2
known_NIR_3034	chr11	60300456	60302493	-	60300456	60307577	A5SS	ENSMUST00000108721.9	known	0.09	5	50	5	50	y	0.10	4	35	4	35	y	0.10	4	38	4	38	y	0.00	0	56	0	56	n	0.08	5	55	5	55	y	0.00	0	28	0	28	n	0.12	7	51	7	51	y	0.12	3	23	3	23	y	0.04	2	45	2	45	y	0.09	7	73	7	73	y	0.12	7	50	7	50	y	0.02	1	59	1	59	n	ENSMUSG00000042709.16	Atpaf2	chr11	protein_coding	ATP synthase mitochondrial F1 complex assembly factor 2
known_NIR_3035	chr11	60300456	60307812	-	60300456	60307577	A5SS	ENSMUST00000108721.9	known	0.00	0	50	0	50	n	0.08	3	35	3	35	y	0.03	1	38	1	38	n	0.00	0	56	0	56	n	0.02	1	55	1	55	n	0.03	1	28	1	28	n	0.04	2	51	2	51	y	0.00	0	23	0	23	n	0.02	1	45	1	45	n	0.03	2	73	2	73	y	0.02	1	50	1	50	n	0.06	4	59	4	59	y	ENSMUSG00000042709.16	Atpaf2	chr11	protein_coding	ATP synthase mitochondrial F1 complex assembly factor 2
known_NIR_3036	chr11	60300456	60307812	-	60300456;60302555	60302493;60307812	ES	ENSMUST00000138696.8	known	0.00	0	3.0	0	5;1	n	0.50	3	3.0	3	4;2	n	0.29	1	2.5	1	4;1	n	-	-	-	-	-	-	0.18	1	4.5	1	5;4	n	1.00	1	0.0	1	0;0	n	0.29	2	5.0	2	7;3	y	0.00	0	2.0	0	3;1	n	0.50	1	1.0	1	2;0	n	0.29	2	5.0	2	7;3	y	0.18	1	4.5	1	7;2	n	0.80	4	1.0	4	1;1	n	ENSMUSG00000042709.16	Atpaf2	chr11	protein_coding	ATP synthase mitochondrial F1 complex assembly factor 2
known_NIR_3037	chr11	60430021	60438514	+	60427463	60438514	A5SS	ENSMUST00000134770.2	known	1.00	69	0	69	0	n	1.00	60	0	60	0	n	0.98	188	4	188	4	y	1.00	83	0	83	0	n	1.00	115	0	115	0	n	1.00	84	0	84	0	n	0.99	99	1	99	1	n	1.00	60	0	60	0	n	1.00	50	0	50	0	n	1.00	112	0	112	0	n	1.00	74	0	74	0	n	1.00	90	0	90	0	n	ENSMUSG00000042650.4	Alkbh5	chr11	protein_coding	alkB homolog 5, RNA demethylase
known_NIR_3038	chr11	60621261	60621409	+	60621261	60621456	A3SS	ENSMUST00000018743.5	known	0.11	2	16	2	16	y	0.00	0	39	0	39	n	0.07	1	13	1	13	n	0.12	3	21	3	21	y	0.06	2	33	2	33	y	0.10	2	18	2	18	y	0.03	1	39	1	39	n	0.09	2	20	2	20	y	0.06	2	29	2	29	y	0.02	1	41	1	41	n	0.14	5	32	5	32	y	0.08	2	22	2	22	y	ENSMUSG00000018599.6	Mief2	chr11	protein_coding	mitochondrial elongation factor 2
known_NIR_3039	chr11	6063431	6069334	-	6063431	6075418	A5SS	ENSMUST00000066496.10	known	0.06	2	34	2	34	y	0.03	1	32	1	32	n	0.00	0	24	0	24	n	0.03	1	36	1	36	n	0.02	1	60	1	60	n	0.00	0	20	0	20	n	0.02	1	49	1	49	n	0.00	0	19	0	19	n	0.03	1	30	1	30	n	0.02	1	52	1	52	n	0.00	0	32	0	32	n	0.00	0	48	0	48	n	ENSMUSG00000053838.15	Nudcd3	chr11	protein_coding	NudC domain containing 3
known_NIR_3040	chr11	6063431	6100495	-	6063431;6075561	6075418;6100495	ES	ENSMUST00000066496.10	known	0.09	3	31.5	3	34;29	y	0.00	0	30.0	0	32;28	n	0.07	2	25.0	2	24;26	y	0.11	5	39.0	5	36;42	y	0.04	2	54.5	2	60;49	y	0.05	1	18.0	1	20;16	n	0.06	3	45.5	3	49;42	y	0.10	2	19.0	2	19;19	y	0.00	0	26.0	0	30;22	n	0.04	2	43.5	2	52;35	y	0.07	2	28.5	2	32;25	y	0.09	5	48.5	5	48;49	y	ENSMUSG00000053838.15	Nudcd3	chr11	protein_coding	NudC domain containing 3
known_NIR_3041	chr11	6063431	6100495	-	6075561	6100495	3pMXE	ENSMUST00000140700.2	known	0.09	3	29	3	29	y	0.00	0	28	0	28	n	0.07	2	26	2	26	y	0.11	5	42	5	42	y	0.04	2	49	2	49	y	0.06	1	16	1	16	n	0.07	3	42	3	42	y	0.10	2	19	2	19	y	0.00	0	22	0	22	n	0.05	2	35	2	35	y	0.07	2	25	2	25	y	0.09	5	49	5	49	y	ENSMUSG00000053838.15	Nudcd3	chr11	protein_coding	NudC domain containing 3
known_NIR_3042	chr11	60680142	60680972	-	60680142;60680532	60680422;60680972	ES	ENSMUST00000018744.15	known	0.00	0	551.5	0	520;583	n	0.00	2	416.0	2	400;432	y	0.00	0	89.0	0	86;92	n	0.00	0	501.0	0	484;518	n	0.00	0	535.5	0	524;547	n	0.00	0	76.5	0	85;68	n	0.00	0	564.5	0	585;544	n	0.00	0	145.0	0	129;161	n	0.00	0	435.5	0	425;446	n	0.00	0	562.5	0	544;581	n	0.00	0	515.0	0	532;498	n	0.00	2	517.0	2	509;525	y	ENSMUSG00000020534.15	Shmt1	chr11	protein_coding	serine hydroxymethyltransferase 1 (soluble)
known_NIR_3043	chr11	60680142	60680972	-	60680532	60680972	3pMXE	ENSMUST00000135081.2	known	0.00	0	583	0	583	n	0.00	2	432	2	432	y	0.00	0	92	0	92	n	0.00	0	518	0	518	n	0.00	0	547	0	547	n	0.00	0	68	0	68	n	0.00	0	544	0	544	n	0.00	0	161	0	161	n	0.00	0	446	0	446	n	0.00	0	581	0	581	n	0.00	0	498	0	498	n	0.00	2	525	2	525	y	ENSMUSG00000020534.15	Shmt1	chr11	protein_coding	serine hydroxymethyltransferase 1 (soluble)
known_NIR_3044	chr11	60683897	60688351	-	60683897	60685662	5pMXE	ENSMUST00000172804.8	known	0.00	0	434	0	434	n	0.00	0	268	0	268	n	0.00	0	69	0	69	n	0.00	0	386	0	386	n	0.00	1	435	1	435	n	0.00	0	47	0	47	n	0.00	1	362	1	362	n	0.00	0	118	0	118	n	0.01	3	338	3	338	y	0.00	0	467	0	467	n	0.00	0	412	0	412	n	0.00	2	418	2	418	y	ENSMUSG00000020534.15	Shmt1	chr11	protein_coding	serine hydroxymethyltransferase 1 (soluble)
known_NIR_3045	chr11	60683897	60688351	-	60683897;60685778	60685662;60688351	ES	ENSMUST00000018744.15	known	0.00	0	384.0	0	434;334	n	0.00	0	250.5	0	268;233	n	0.00	0	63.0	0	69;57	n	0.00	0	382.5	0	386;379	n	0.00	1	411.0	1	435;387	n	0.00	0	52.5	0	47;58	n	0.00	1	365.0	1	362;368	n	0.00	0	117.0	0	118;116	n	0.01	3	336.0	3	338;334	y	0.00	0	452.5	0	467;438	n	0.00	0	377.0	0	412;342	n	0.00	2	415.0	2	418;412	y	ENSMUSG00000020534.15	Shmt1	chr11	protein_coding	serine hydroxymethyltransferase 1 (soluble)
known_NIR_3046	chr11	60695226	60697772	-	60695234	60697772	A3SS	ENSMUST00000018744.15	known	0.00	0	225	0	225	n	0.00	0	137	0	137	n	0.00	0	28	0	28	n	0.00	0	284	0	284	n	0.03	9	295	9	295	y	0.00	0	46	0	46	n	0.02	4	209	4	209	y	0.02	2	81	2	81	y	0.00	0	209	0	209	n	0.00	0	285	0	285	n	0.00	0	198	0	198	n	0.04	9	237	9	237	y	ENSMUSG00000020534.15	Shmt1	chr11	protein_coding	serine hydroxymethyltransferase 1 (soluble)
known_NIR_3047	chr11	60756174	60769539	-	60756174;60766873	60766586;60769539	ES	ENSMUST00000168218.8	known	0.83	41	8.5	41	8;9	y	0.79	50	13.5	50	14;13	y	0.78	66	18.5	66	25;12	y	0.84	46	9.0	46	8;10	y	0.79	74	20.0	74	21;19	y	0.69	20	9.0	20	7;11	y	0.78	77	21.5	77	17;26	y	0.82	38	8.5	38	14;3	y	0.72	39	15.5	39	17;14	y	0.79	72	19.5	72	21;18	y	0.80	53	13.5	53	13;14	y	0.76	63	19.5	63	13;26	y	ENSMUSG00000043284.13	Tmem11	chr11	protein_coding	transmembrane protein 11
known_NIR_3048	chr11	60833226	60833977	+	60833179	60833977	A5SS	ENSMUST00000019076.10	known	0.00	0	175	0	175	n	0.00	0	112	0	112	n	0.00	0	101	0	101	n	0.00	0	206	0	206	n	0.00	0	183	0	183	n	0.00	0	61	0	61	n	0.00	0	174	0	174	n	0.01	1	80	1	80	n	0.01	2	146	2	146	y	0.00	0	229	0	229	n	0.00	0	142	0	142	n	0.00	0	181	0	181	n	ENSMUSG00000018932.10	Map2k3	chr11	protein_coding	mitogen-activated protein kinase kinase 3
known_NIR_3049	chr11	60835607	60837470	+	60835607;60836388	60836337;60837470	ES	ENSMUST00000019076.10	known	0.00	0	196.0	0	185;207	n	0.01	1	161.0	1	144;178	n	0.00	0	140.5	0	140;141	n	0.00	0	235.5	0	218;253	n	0.01	3	295.5	3	287;304	y	0.00	0	89.5	0	87;92	n	0.00	0	227.0	0	216;238	n	0.00	0	103.0	0	106;100	n	0.00	0	170.0	0	150;190	n	0.00	1	266.0	1	252;280	n	0.00	0	222.0	0	210;234	n	0.00	0	235.0	0	229;241	n	ENSMUSG00000018932.10	Map2k3	chr11	protein_coding	mitogen-activated protein kinase kinase 3
known_NIR_3050	chr11	61137147	61139688	-	61137147;61138867	61138755;61139688	ES	ENSMUST00000208086.2	known	0.93	260	19.5	260	19;20	y	0.94	234	15.5	234	17;14	y	0.90	64	7.5	64	9;6	y	0.95	381	19.5	381	26;13	y	0.93	264	19.5	264	19;20	y	0.89	33	4.0	33	3;5	y	0.94	462	31.0	462	39;23	y	0.98	78	1.5	78	0;3	n	0.92	293	25.0	293	27;23	y	0.94	802	53.0	802	66;40	y	0.94	509	33.0	509	38;28	y	0.95	259	13.0	259	14;12	y	ENSMUSG00000010025.20	Aldh3a2	chr11	protein_coding	aldehyde dehydrogenase family 3, subfamily A2
known_NIR_3051	chr11	61139308	61139688	-	61137147	61139688	A3SS	ENSMUST00000074127.14	known	0.02	6	260	6	260	y	0.02	5	234	5	234	y	0.03	2	64	2	64	y	0.01	3	381	3	381	y	0.01	4	264	4	264	y	0.06	2	33	2	33	y	0.00	2	462	2	462	y	0.03	2	78	2	78	y	0.01	4	293	4	293	y	0.01	8	802	8	802	y	0.01	3	509	3	509	y	0.01	2	259	2	259	y	ENSMUSG00000010025.20	Aldh3a2	chr11	protein_coding	aldehyde dehydrogenase family 3, subfamily A2
known_NIR_3052	chr11	61139308	61139688	-	61138867	61139688	A3SS	ENSMUST00000208086.2	known	0.23	6	20	6	20	y	0.26	5	14	5	14	y	0.25	2	6	2	6	n	0.19	3	13	3	13	y	0.17	4	20	4	20	y	0.29	2	5	2	5	n	0.08	2	23	2	23	y	0.40	2	3	2	3	n	0.15	4	23	4	23	y	0.17	8	40	8	40	y	0.10	3	28	3	28	y	0.14	2	12	2	12	y	ENSMUSG00000010025.20	Aldh3a2	chr11	protein_coding	aldehyde dehydrogenase family 3, subfamily A2
known_NIR_3053	chr11	61144578	61147565	-	61144616	61147565	A3SS	ENSMUST00000066277.10	known	0.02	5	228	5	228	y	0.00	0	146	0	146	n	0.00	0	56	0	56	n	0.01	4	357	4	357	y	0.00	0	253	0	253	n	0.00	0	33	0	33	n	0.00	0	371	0	371	n	0.01	1	73	1	73	n	0.02	5	234	5	234	y	0.03	24	728	24	728	y	0.00	0	392	0	392	n	0.00	0	250	0	250	n	ENSMUSG00000010025.20	Aldh3a2	chr11	protein_coding	aldehyde dehydrogenase family 3, subfamily A2
known_NIR_3054	chr11	61156121	61158065	-	61156121	61157680	5pMXE	ENSMUST00000066277.10	known	0.01	1	129	1	129	n	0.00	0	72	0	72	n	0.00	0	49	0	49	n	0.01	3	283	3	283	y	0.00	0	201	0	201	n	0.03	1	34	1	34	n	0.00	1	250	1	250	n	0.00	0	50	0	50	n	0.00	0	158	0	158	n	0.01	3	464	3	464	y	0.01	2	256	2	256	y	0.02	4	164	4	164	y	ENSMUSG00000010025.20	Aldh3a2	chr11	protein_coding	aldehyde dehydrogenase family 3, subfamily A2
known_NIR_3055	chr11	61156121;61157840	61157680;61158065	-	61156121	61158065	cassetteExon	ENSMUST00000147291.8	known	0.98	65.5	1	129;2	1	n	1.00	37.0	0	72;2	0	n	1.00	24.5	0	49;0	0	n	0.98	143.0	3	283;3	3	y	1.00	101.0	0	201;1	0	n	0.95	17.5	1	34;1	1	n	0.99	125.0	1	250;0	1	n	1.00	25.0	0	50;0	0	n	1.00	79.5	0	158;1	0	n	0.99	233.0	3	464;2	3	y	0.98	130.5	2	256;5	2	y	0.95	83.0	4	164;2	4	y	ENSMUSG00000010025.20	Aldh3a2	chr11	protein_coding	aldehyde dehydrogenase family 3, subfamily A2
known_NIR_3056	chr11	61254317	61256268	-	61254317	61257355	A5SS	ENSMUST00000131723.8	known	0.93	14	1	14	1	n	1.00	10	0	10	0	n	-	-	-	-	-	-	0.82	14	3	14	3	y	1.00	14	0	14	0	n	-	-	-	-	-	-	0.83	10	2	10	2	y	1.00	5	0	5	0	n	0.86	12	2	12	2	y	1.00	12	0	12	0	n	1.00	16	0	16	0	n	1.00	12	0	12	0	n	ENSMUSG00000010122.15	Slc47a1	chr11	protein_coding	solute carrier family 47, member 1
known_NIR_3057	chr11	61254317	61256268	-	61254317	61258499	A5SS	ENSMUST00000010267.10	known	0.19	14	61	14	61	y	0.20	10	40	10	40	y	0.00	0	4	0	4	n	0.15	14	80	14	80	y	0.30	14	33	14	33	y	0.00	0	4	0	4	n	0.14	10	60	10	60	y	0.38	5	8	5	8	y	0.19	12	50	12	50	y	0.11	12	98	12	98	y	0.21	16	59	16	59	y	0.15	12	70	12	70	y	ENSMUSG00000010122.15	Slc47a1	chr11	protein_coding	solute carrier family 47, member 1
known_NIR_3058	chr11	61254317;61257720	61257355;61258499	-	61254317	61258499	cassetteExon	ENSMUST00000010267.10	known	0.20	15.0	61	1;29	61	n	0.12	5.5	40	0;11	40	n	0.00	0.0	4	0;0	4	n	0.15	14.0	80	3;25	80	y	0.23	10.0	33	0;20	33	n	0.00	0.0	4	0;0	4	n	0.15	11.0	60	2;20	60	y	0.11	1.0	8	0;2	8	n	0.14	8.0	50	2;14	50	y	0.09	9.5	98	0;19	98	n	0.14	9.5	59	0;19	59	n	0.10	7.5	70	0;15	70	n	ENSMUSG00000010122.15	Slc47a1	chr11	protein_coding	solute carrier family 47, member 1
known_NIR_3059	chr11	61264282	61269005	-	61264282	61268739	5pMXE	ENSMUST00000010267.10	known	0.02	1	53	1	53	n	0.10	4	37	4	37	y	0.00	0	3	0	3	n	0.14	15	91	15	91	y	0.04	3	65	3	65	y	0.00	0	4	0	4	n	0.14	9	55	9	55	y	0.12	3	21	3	21	y	0.00	0	39	0	39	n	0.10	11	98	11	98	y	0.08	5	58	5	58	y	0.10	6	55	6	55	y	ENSMUSG00000010122.15	Slc47a1	chr11	protein_coding	solute carrier family 47, member 1
known_NIR_3060	chr11	61424507	61426097	-	61425439	61426097	3pMXE	ENSMUST00000151545.2	known	0.50	3	3	3	3	n	1.00	3	0	3	0	n	0.75	18	6	18	6	y	0.91	10	1	10	1	n	0.67	8	4	8	4	y	1.00	10	0	10	0	n	0.40	4	6	4	6	y	0.90	9	1	9	1	n	0.56	5	4	5	4	n	0.75	6	2	6	2	n	0.83	5	1	5	1	n	0.58	7	5	7	5	y	ENSMUSG00000001036.18	Epn2	chr11	protein_coding	epsin 2
known_NIR_3061	chr11	61424507;61425439	61425404;61426097	-	61424507	61426097	cassetteExon	ENSMUST00000108711.8	known	0.50	3.0	3	3;3	3	n	0.00	0.0	3	0;0	3	n	0.18	4.0	18	2;6	18	y	0.05	0.5	10	0;1	10	n	0.24	2.5	8	1;4	8	n	0.00	0.0	10	0;0	10	n	0.43	3.0	4	0;6	4	n	0.05	0.5	9	0;1	9	n	0.33	2.5	5	1;4	5	n	0.20	1.5	6	1;2	6	n	0.17	1.0	5	1;1	5	n	0.36	4.0	7	3;5	7	y	ENSMUSG00000001036.18	Epn2	chr11	protein_coding	epsin 2
known_NIR_3062	chr11	61437737;61456720	61456648;61470393	-	61437737	61470393	cassetteExon	ENSMUST00000001063.15	known	0.00	0.0	1	0;0	1	n	0.00	0.0	2	0;0	2	n	0.08	1.0	11	2;0	11	n	0.00	0.0	4	0;0	4	n	0.00	0.0	4	0;0	4	n	0.05	0.5	10	0;1	10	n	0.00	0.0	5	0;0	5	n	0.00	0.0	3	0;0	3	n	0.00	0.0	6	0;0	6	n	0.00	0.0	5	0;0	5	n	0.50	2.0	2	2;2	2	n	0.43	3.0	4	2;4	4	y	ENSMUSG00000001036.18	Epn2	chr11	protein_coding	epsin 2
known_NIR_3063	chr11	61643759	61647021	-	61643759;61646288	61646236;61647021	ES	ENSMUST00000168115.8	known	0.29	11	26.5	11	23;30	y	0.29	10	24.0	10	25;23	y	0.40	9	13.5	9	15;12	y	0.12	4	28.5	4	30;27	y	0.25	9	27.5	9	25;30	y	0.62	8	5.0	8	4;6	y	0.44	12	15.5	12	17;14	y	0.31	2	4.5	2	3;6	y	0.29	8	20.0	8	22;18	y	0.14	5	30.0	5	32;28	y	0.11	2	15.5	2	13;18	y	0.15	5	28.0	5	28;28	y	ENSMUSG00000020528.15	Prpsap2	chr11	protein_coding	phosphoribosyl pyrophosphate synthetase-associated protein 2
known_NIR_3064	chr11	61643759	61647021	-	61646288	61647021	3pMXE	ENSMUST00000123575.2	known	0.27	11	30	11	30	y	0.30	10	23	10	23	y	0.43	9	12	9	12	y	0.13	4	27	4	27	y	0.23	9	30	9	30	y	0.57	8	6	8	6	y	0.46	12	14	12	14	y	0.25	2	6	2	6	n	0.31	8	18	8	18	y	0.15	5	28	5	28	y	0.10	2	18	2	18	y	0.15	5	28	5	28	y	ENSMUSG00000020528.15	Prpsap2	chr11	protein_coding	phosphoribosyl pyrophosphate synthetase-associated protein 2
known_NIR_3065	chr11	61647171;61647503	61647408;61652780	-	61647171	61652780	cassetteExon	ENSMUST00000168115.8	known	0.73	11.0	4	20;2	4	y	0.50	5.0	5	9;1	5	n	0.70	11.5	5	20;3	5	y	0.39	7.0	11	8;6	11	y	0.71	17.0	7	25;9	7	y	0.83	10.0	2	17;3	2	y	0.56	15.5	12	24;7	12	y	0.85	5.5	1	9;2	1	n	0.64	7.0	4	10;4	4	y	0.76	19.0	6	30;8	6	y	0.73	8.0	3	12;4	3	y	0.56	11.5	9	14;9	9	y	ENSMUSG00000020528.15	Prpsap2	chr11	protein_coding	phosphoribosyl pyrophosphate synthetase-associated protein 2
known_NIR_3066	chr11	61647503;61652400	61652306;61652780	-	61647503	61652780	cassetteExon	ENSMUST00000151966.8	known	0.00	0.0	2	0;0	2	n	0.00	0.0	1	0;0	1	n	0.40	2.0	3	3;1	3	n	0.14	1.0	6	0;2	6	n	0.22	2.5	9	3;2	9	y	0.00	0.0	3	0;0	3	n	0.07	0.5	7	1;0	7	n	0.64	3.5	2	2;5	2	n	0.38	2.5	4	3;2	4	n	0.27	3.0	8	4;2	8	y	0.20	1.0	4	2;0	4	n	0.25	3.0	9	4;2	9	y	ENSMUSG00000020528.15	Prpsap2	chr11	protein_coding	phosphoribosyl pyrophosphate synthetase-associated protein 2
known_NIR_3067	chr11	61652400	61652780	-	61647171	61652780	A3SS	ENSMUST00000168115.8	known	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.17	1	5	1	5	n	0.15	2	11	2	11	y	0.22	2	7	2	7	n	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.83	5	1	5	1	n	0.33	2	4	2	4	n	0.25	2	6	2	6	n	0.00	0	3	0	3	n	0.18	2	9	2	9	y	ENSMUSG00000020528.15	Prpsap2	chr11	protein_coding	phosphoribosyl pyrophosphate synthetase-associated protein 2
known_NIR_3068	chr11	62023280	62037132	+	62023280	62028876	3pMXE	ENSMUST00000202178.4	known	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.64	7	4	7	4	y	0.50	2	2	2	2	n	1.00	1	0	1	0	n	0.40	2	3	2	3	n	0.33	2	4	2	4	n	0.50	2	2	2	2	n	0.25	1	3	1	3	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.67	6	3	6	3	n	ENSMUSG00000042331.14	Specc1	chr11	protein_coding	sperm antigen with calponin homology and coiled-coil domains 1
known_NIR_3069	chr11	6216917	6217418	-	6216971	6217418	A3SS	ENSMUST00000004507.11	known	0.04	2	46	2	46	y	0.00	0	40	0	40	n	0.04	4	87	4	87	y	0.03	2	56	2	56	y	0.07	6	79	6	79	y	0.06	3	51	3	51	y	0.05	4	80	4	80	y	0.05	2	42	2	42	y	0.00	0	61	0	61	n	0.00	0	72	0	72	n	0.03	2	59	2	59	y	0.02	1	53	1	53	n	ENSMUSG00000004393.11	Ddx56	chr11	protein_coding	DEAD box helicase 56
known_NIR_3070	chr11	62174533;62174995	62174957;62175829	+	62174533	62175829	cassetteExon	ENSMUST00000101075.11	known	0.42	11.5	16	12;11	16	y	0.59	13.0	9	13;13	9	y	0.88	42.0	6	42;42	6	y	0.63	34.0	20	30;38	20	y	0.62	22.5	14	19;26	14	y	0.73	19.0	7	17;21	7	y	0.58	22.5	16	24;21	16	y	0.76	19.5	6	20;19	6	y	0.49	13.5	14	11;16	14	y	0.72	30.5	12	31;30	12	y	0.59	17.0	12	17;17	12	y	0.64	19.5	11	20;19	11	y	ENSMUSG00000042298.19	Ttc19	chr11	protein_coding	tetratricopeptide repeat domain 19
known_NIR_3071	chr11	62204004	62206703	+	62204004	62204836	3pMXE	ENSMUST00000101075.11	known	0.22	7	25	7	25	y	0.15	3	17	3	17	y	0.07	5	64	5	64	y	0.31	12	27	12	27	y	0.25	15	44	15	44	y	0.25	7	21	7	21	y	0.20	10	39	10	39	y	0.06	2	29	2	29	y	0.24	6	19	6	19	y	0.17	7	33	7	33	y	0.17	7	35	7	35	y	0.15	5	29	5	29	y	ENSMUSG00000042298.19	Ttc19	chr11	protein_coding	tetratricopeptide repeat domain 19
known_NIR_3072	chr11	62210251	62211822	-	62210368	62211822	A3SS	ENSMUST00000101066.10	known	0.07	6	85	6	85	y	0.08	8	89	8	89	y	0.12	16	113	16	113	y	0.16	16	85	16	85	y	0.12	21	147	21	147	y	0.10	6	57	6	57	y	0.06	9	140	9	140	y	0.10	6	52	6	52	y	0.17	20	101	20	101	y	0.08	11	131	11	131	y	0.06	8	124	8	124	y	0.06	7	116	7	116	y	ENSMUSG00000018501.18	Ncor1	chr11	protein_coding	nuclear receptor co-repressor 1
known_NIR_3073	chr11	62218072	62220267	-	62218075	62220267	A3SS	ENSMUST00000101066.10	known	0.31	18	41	18	41	y	0.30	31	73	31	73	y	0.27	27	74	27	74	y	0.23	27	92	27	92	y	0.21	24	92	24	92	y	0.26	14	39	14	39	y	0.23	27	91	27	91	y	0.26	17	48	17	48	y	0.36	29	51	29	51	y	0.35	49	91	49	91	y	0.18	15	70	15	70	y	0.27	37	101	37	101	y	ENSMUSG00000018501.18	Ncor1	chr11	protein_coding	nuclear receptor co-repressor 1
known_NIR_3074	chr11	62229894	62231234	-	62229891	62231234	A3SS	ENSMUST00000101066.10	known	0.75	44	15	44	15	y	0.60	30	20	30	20	y	0.67	44	22	44	22	y	0.51	38	37	38	37	y	0.71	70	28	70	28	y	0.56	23	18	23	18	y	0.63	58	34	58	34	y	0.53	27	24	27	24	y	0.58	32	23	32	23	y	0.58	55	40	55	40	y	0.74	46	16	46	16	y	0.66	61	31	61	31	y	ENSMUSG00000018501.18	Ncor1	chr11	protein_coding	nuclear receptor co-repressor 1
known_NIR_3075	chr11	62233956	62235458	-	62234177	62235458	A3SS	ENSMUST00000101066.10	known	0.00	0	43	0	43	n	0.00	0	39	0	39	n	0.00	0	65	0	65	n	0.00	0	57	0	57	n	0.03	3	87	3	87	y	0.03	1	36	1	36	n	0.03	2	69	2	69	y	0.00	0	36	0	36	n	0.00	0	47	0	47	n	0.05	4	80	4	80	y	0.00	0	43	0	43	n	0.06	4	64	4	64	y	ENSMUSG00000018501.18	Ncor1	chr11	protein_coding	nuclear receptor co-repressor 1
known_NIR_3076	chr11	62236144	62240221	-	62236144	62240179	A5SS	ENSMUST00000101066.10	known	0.00	0	39	0	39	n	0.00	0	19	0	19	n	0.03	1	38	1	38	n	0.00	0	44	0	44	n	0.00	0	59	0	59	n	0.00	0	28	0	28	n	0.00	0	46	0	46	n	0.00	0	39	0	39	n	0.03	1	33	1	33	n	0.02	1	44	1	44	n	0.07	3	40	3	40	y	0.07	3	38	3	38	y	ENSMUSG00000018501.18	Ncor1	chr11	protein_coding	nuclear receptor co-repressor 1
known_NIR_3077	chr11	62236144	62242204	-	62236144;62240319	62240179;62242204	ES	ENSMUST00000101066.10	known	0.22	8	28.0	8	39;17	y	0.15	3	16.5	3	19;14	y	0.09	4	39.0	4	38;40	y	0.17	9	44.5	9	44;45	y	0.27	18	49.5	18	59;40	y	0.22	6	21.5	6	28;15	y	0.27	13	35.5	13	46;25	y	0.12	4	28.0	4	39;17	y	0.22	9	32.5	9	33;32	y	0.26	15	42.5	15	44;41	y	0.19	7	30.5	7	40;21	y	0.29	12	30.0	12	38;22	y	ENSMUSG00000018501.18	Ncor1	chr11	protein_coding	nuclear receptor co-repressor 1
known_NIR_3078	chr11	62236144;62240319	62240221;62242204	-	62236144	62242204	cassetteExon	ENSMUST00000155712.9	known	0.52	8.5	8	0;17	8	n	0.70	7.0	3	0;14	3	n	0.84	20.5	4	1;40	4	n	0.71	22.5	9	0;45	9	n	0.53	20.0	18	0;40	18	n	0.56	7.5	6	0;15	6	n	0.49	12.5	13	0;25	13	n	0.68	8.5	4	0;17	4	n	0.65	16.5	9	1;32	9	n	0.58	21.0	15	1;41	15	n	0.63	12.0	7	3;21	7	y	0.51	12.5	12	3;22	12	y	ENSMUSG00000018501.18	Ncor1	chr11	protein_coding	nuclear receptor co-repressor 1
known_NIR_3079	chr11	62244160	62245209	-	62244160	62245197	A5SS	ENSMUST00000101066.10	known	0.15	6	34	6	34	y	0.00	0	26	0	26	n	0.07	3	43	3	43	y	0.07	5	65	5	65	y	0.12	9	68	9	68	y	0.15	4	22	4	22	y	0.15	9	51	9	51	y	0.11	4	33	4	33	y	0.06	2	34	2	34	y	0.00	0	47	0	47	n	0.03	1	31	1	31	n	0.14	8	50	8	50	y	ENSMUSG00000018501.18	Ncor1	chr11	protein_coding	nuclear receptor co-repressor 1
known_NIR_3080	chr11	62249841	62257790	-	62249841	62250587	5pMXE	ENSMUST00000037575.15	known	0.43	12	16	12	16	y	0.58	11	8	11	8	y	0.39	17	27	17	27	y	0.33	14	29	14	29	y	0.55	33	27	33	27	y	0.33	13	27	13	27	y	0.46	23	27	23	27	y	0.46	13	15	13	15	y	0.47	14	16	14	16	y	0.36	19	34	19	34	y	0.37	11	19	11	19	y	0.60	33	22	33	22	y	ENSMUSG00000018501.18	Ncor1	chr11	protein_coding	nuclear receptor co-repressor 1
known_NIR_3081	chr11	62249841;62250760	62250587;62257790	-	62249841	62257790	cassetteExon	ENSMUST00000101066.10	known	0.57	16.0	12	16;16	12	y	0.44	8.5	11	8;9	11	y	0.62	27.5	17	27;28	17	y	0.68	30.0	14	29;31	14	y	0.41	22.5	33	27;18	33	y	0.58	18.0	13	27;9	13	y	0.53	26.0	23	27;25	23	y	0.62	21.0	13	15;27	13	y	0.52	15.0	14	16;14	14	y	0.64	33.5	19	34;33	19	y	0.61	17.0	11	19;15	11	y	0.44	25.5	33	22;29	33	y	ENSMUSG00000018501.18	Ncor1	chr11	protein_coding	nuclear receptor co-repressor 1
known_NIR_3082	chr11	62264280	62267461	-	62264448	62267461	A3SS	ENSMUST00000101066.10	known	0.28	5	13	5	13	y	0.36	4	7	4	7	y	0.16	6	31	6	31	y	0.33	13	26	13	26	y	0.35	14	26	14	26	y	0.31	10	22	10	22	y	0.33	13	26	13	26	y	0.39	9	14	9	14	y	0.30	7	16	7	16	y	0.30	13	31	13	31	y	0.34	11	21	11	21	y	0.28	13	34	13	34	y	ENSMUSG00000018501.18	Ncor1	chr11	protein_coding	nuclear receptor co-repressor 1
known_NIR_3083	chr11	62264400	62267461	-	62264280	62267461	A3SS	ENSMUST00000101067.10	known	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.13	2	13	2	13	y	0.12	2	14	2	14	y	0.23	3	10	3	10	y	0.00	0	13	0	13	n	0.31	4	9	4	9	y	0.22	2	7	2	7	n	0.00	0	13	0	13	n	0.21	3	11	3	11	y	0.28	5	13	5	13	y	ENSMUSG00000018501.18	Ncor1	chr11	protein_coding	nuclear receptor co-repressor 1
known_NIR_3084	chr11	62264400	62267461	-	62264448	62267461	A3SS	ENSMUST00000101066.10	known	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.03	1	31	1	31	n	0.07	2	26	2	26	y	0.07	2	26	2	26	y	0.12	3	22	3	22	y	0.00	0	26	0	26	n	0.22	4	14	4	14	y	0.11	2	16	2	16	y	0.00	0	31	0	31	n	0.12	3	21	3	21	y	0.13	5	34	5	34	y	ENSMUSG00000018501.18	Ncor1	chr11	protein_coding	nuclear receptor co-repressor 1
known_NIR_3085	chr11	62267587	62269323	-	62267587	62269341	A5SS	ENSMUST00000101066.10	known	0.43	13	17	13	17	y	0.29	2	5	2	5	n	0.24	6	19	6	19	y	0.30	12	28	12	28	y	0.41	16	23	16	23	y	0.17	4	20	4	20	y	0.34	12	23	12	23	y	0.18	3	14	3	14	y	0.37	11	19	11	19	y	0.22	13	45	13	45	y	0.31	10	22	10	22	y	0.17	8	40	8	40	y	ENSMUSG00000018501.18	Ncor1	chr11	protein_coding	nuclear receptor co-repressor 1
known_NIR_3086	chr11	62275671	62280517	-	62275668	62280517	A3SS	ENSMUST00000101066.10	known	0.18	3	14	3	14	y	0.17	2	10	2	10	y	0.40	16	24	16	24	y	0.27	11	30	11	30	y	0.29	10	25	10	25	y	0.35	6	11	6	11	y	0.21	6	22	6	22	y	0.35	12	22	12	22	y	0.44	7	9	7	9	y	0.15	7	39	7	39	y	0.25	2	6	2	6	n	0.41	17	24	17	24	y	ENSMUSG00000018501.18	Ncor1	chr11	protein_coding	nuclear receptor co-repressor 1
known_NIR_3087	chr11	62292093	62294625	-	62294288	62294625	3pMXE	ENSMUST00000069456.11	known	0.42	13	18	13	18	y	0.43	9	12	9	12	y	0.24	11	34	11	34	y	0.44	17	22	17	22	y	0.54	31	26	31	26	y	0.65	13	7	13	7	y	0.33	16	32	16	32	y	0.32	12	25	12	25	y	0.54	19	16	19	16	y	0.51	32	31	32	31	y	0.40	8	12	8	12	y	0.58	21	15	21	15	y	ENSMUSG00000018501.18	Ncor1	chr11	protein_coding	nuclear receptor co-repressor 1
known_NIR_3088	chr11	62292093;62294288	62294262;62294625	-	62292093	62294625	cassetteExon	ENSMUST00000101066.10	known	0.50	13.0	13	8;18	13	y	0.53	10.0	9	8;12	9	y	0.72	28.0	11	22;34	11	y	0.52	18.5	17	15;22	17	y	0.43	23.5	31	21;26	31	y	0.32	6.0	13	5;7	13	y	0.64	29.0	16	26;32	16	y	0.61	19.0	12	13;25	12	y	0.42	13.5	19	11;16	19	y	0.44	25.0	32	19;31	32	y	0.58	11.0	8	10;12	8	y	0.33	10.5	21	6;15	21	y	ENSMUSG00000018501.18	Ncor1	chr11	protein_coding	nuclear receptor co-repressor 1
known_NIR_3089	chr11	62329341	62348262	-	62329341	62347974	5pMXE	ENSMUST00000018645.13	known	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	15	0	15	n	0.18	2	9	2	9	y	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.12	1	7	1	7	n	0.17	2	10	2	10	y	0.00	0	5	0	5	n	0.15	2	11	2	11	y	0.29	2	5	2	5	n	0.00	0	16	0	16	n	ENSMUSG00000018501.18	Ncor1	chr11	protein_coding	nuclear receptor co-repressor 1
known_NIR_3090	chr11	62329341	62349281	-	62329341	62347974	5pMXE	ENSMUST00000018645.13	known	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	15	0	15	n	0.40	6	9	6	9	y	0.00	0	15	0	15	n	0.18	2	9	2	9	y	0.12	1	7	1	7	n	0.23	3	10	3	10	y	0.17	1	5	1	5	n	0.15	2	11	2	11	y	0.00	0	5	0	5	n	0.16	3	16	3	16	y	ENSMUSG00000018501.18	Ncor1	chr11	protein_coding	nuclear receptor co-repressor 1
known_NIR_3091	chr11	6241769	6246952	+	6241693	6246952	A5SS	ENSMUST00000003461.15	known	0.05	4	76	4	76	y	0.06	2	34	2	34	y	0.02	2	129	2	129	y	0.06	8	125	8	125	y	0.06	7	114	7	114	y	0.03	2	75	2	75	y	0.06	10	161	10	161	y	0.03	3	101	3	101	y	0.06	6	88	6	88	y	0.05	6	104	6	104	y	0.04	4	86	4	86	y	0.03	4	120	4	120	y	ENSMUSG00000020456.18	Ogdh	chr11	protein_coding	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)
known_NIR_3092	chr11	6242291	6246952	+	6241693	6246952	A5SS	ENSMUST00000003461.15	known	0.05	4	76	4	76	y	0.08	3	34	3	34	y	0.04	6	129	6	129	y	0.02	3	125	3	125	y	0.06	7	114	7	114	y	0.10	8	75	8	75	y	0.05	9	161	9	161	y	0.05	5	101	5	101	y	0.06	6	88	6	88	y	0.09	10	104	10	104	y	0.12	12	86	12	86	y	0.05	6	120	6	120	y	ENSMUSG00000020456.18	Ogdh	chr11	protein_coding	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)
known_NIR_3093	chr11	6242291	6246952	+	6241769	6246952	A5SS	ENSMUST00000101554.9	known	0.50	4	4	4	4	n	0.60	3	2	3	2	n	0.75	6	2	6	2	n	0.27	3	8	3	8	y	0.50	7	7	7	7	y	0.80	8	2	8	2	y	0.47	9	10	9	10	y	0.62	5	3	5	3	n	0.50	6	6	6	6	y	0.62	10	6	10	6	y	0.75	12	4	12	4	y	0.60	6	4	6	4	y	ENSMUSG00000020456.18	Ogdh	chr11	protein_coding	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)
known_NIR_3094	chr11	62424780;62425048	62424872;62427108	-	62424780	62427108	cassetteExon	ENSMUST00000018653.8	known	0.01	0.5	88	1;0	88	n	0.04	2.5	64	2;3	64	y	0.04	2.0	52	1;3	52	n	0.01	0.5	84	1;0	84	n	0.02	2.0	104	4;0	104	n	0.07	2.5	31	3;2	31	y	0.04	4.0	95	6;2	95	y	0.05	1.5	29	3;0	29	n	0.02	1.5	60	2;1	60	n	0.01	1.5	116	1;2	116	n	0.01	1.0	73	2;0	73	n	0.01	0.5	89	0;1	89	n	ENSMUSG00000018509.9	Cenpv	chr11	protein_coding	centromere protein V
known_NIR_3095	chr11	6242513	6246952	+	6241693	6246952	A5SS	ENSMUST00000003461.15	known	0.01	1	76	1	76	n	0.03	1	34	1	34	n	0.01	1	129	1	129	n	0.02	2	125	2	125	y	0.01	1	114	1	114	n	0.00	0	75	0	75	n	0.01	2	161	2	161	y	0.01	1	101	1	101	n	0.00	0	88	0	88	n	0.02	2	104	2	104	y	0.00	0	86	0	86	n	0.03	4	120	4	120	y	ENSMUSG00000020456.18	Ogdh	chr11	protein_coding	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)
known_NIR_3096	chr11	6242513	6246952	+	6241769	6246952	A5SS	ENSMUST00000101554.9	known	0.20	1	4	1	4	n	0.33	1	2	1	2	n	0.33	1	2	1	2	n	0.20	2	8	2	8	y	0.12	1	7	1	7	n	0.00	0	2	0	2	n	0.17	2	10	2	10	y	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.25	2	6	2	6	n	0.00	0	4	0	4	n	0.50	4	4	4	4	n	ENSMUSG00000020456.18	Ogdh	chr11	protein_coding	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)
known_NIR_3097	chr11	6242513	6246952	+	6242291	6246952	A5SS	ENSMUST00000140765.8	known	0.20	1	4	1	4	n	0.25	1	3	1	3	n	0.14	1	6	1	6	n	0.40	2	3	2	3	n	0.12	1	7	1	7	n	0.00	0	8	0	8	n	0.18	2	9	2	9	y	0.17	1	5	1	5	n	0.00	0	6	0	6	n	0.17	2	10	2	10	y	0.00	0	12	0	12	n	0.40	4	6	4	6	y	ENSMUSG00000020456.18	Ogdh	chr11	protein_coding	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)
known_NIR_3098	chr11	6242714	6246952	+	6241693	6246952	A5SS	ENSMUST00000003461.15	known	0.01	1	76	1	76	n	0.00	0	34	0	34	n	0.00	0	129	0	129	n	0.00	0	125	0	125	n	0.00	0	114	0	114	n	0.00	0	75	0	75	n	0.02	4	161	4	161	y	0.00	0	101	0	101	n	0.00	0	88	0	88	n	0.01	1	104	1	104	n	0.00	0	86	0	86	n	0.02	3	120	3	120	y	ENSMUSG00000020456.18	Ogdh	chr11	protein_coding	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)
known_NIR_3099	chr11	6242714	6246952	+	6241769	6246952	A5SS	ENSMUST00000101554.9	known	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.29	4	10	4	10	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.14	1	6	1	6	n	0.00	0	4	0	4	n	0.43	3	4	3	4	n	ENSMUSG00000020456.18	Ogdh	chr11	protein_coding	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)
known_NIR_3100	chr11	6242714	6246952	+	6242291	6246952	A5SS	ENSMUST00000140765.8	known	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.31	4	9	4	9	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.09	1	10	1	10	n	0.00	0	12	0	12	n	0.33	3	6	3	6	n	ENSMUSG00000020456.18	Ogdh	chr11	protein_coding	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)
known_NIR_3101	chr11	62442677	62442966	+	62442421	62442966	A5SS	ENSMUST00000019649.4	known	0.00	3	1994	3	1994	y	0.00	2	1742	2	1742	y	0.00	7	3061	7	3061	y	0.00	0	1750	0	1750	n	0.00	0	2676	0	2676	n	0.00	2	1648	2	1648	y	0.00	0	2432	0	2432	n	0.00	0	1817	0	1817	n	0.00	2	945	2	945	y	0.00	0	1994	0	1994	n	0.00	0	1629	0	1629	n	0.00	0	1777	0	1777	n	ENSMUSG00000019505.8	Ubb	chr11	protein_coding	ubiquitin B
known_NIR_3102	chr11	62497072	62511260	-	62497072;62500141	62500029;62511260	ES	ENSMUST00000057194.9	known	0.00	0	3.0	0	4;2	n	0.00	0	9.5	0	13;6	n	0.00	0	12.5	0	10;15	n	0.11	1	8.5	1	12;5	n	0.15	3	16.5	3	11;22	y	0.00	0	5.0	0	4;6	n	0.00	0	8.5	0	9;8	n	0.32	3	6.5	3	9;4	y	0.00	0	4.0	0	0;8	n	0.00	0	9.5	0	12;7	n	0.00	0	1.0	0	2;0	n	0.00	0	2.5	0	2;3	n	ENSMUSG00000046417.15	Lrrc75a	chr11	protein_coding	leucine rich repeat containing 75A
known_NIR_3103	chr11	62539682	62555496	+	62539642	62555496	A5SS	ENSMUST00000062860.5	known	0.50	2	2	2	2	n	0.33	3	6	3	6	n	0.25	1	3	1	3	n	0.40	4	6	4	6	y	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.22	2	7	2	7	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	1.00	3	0	3	0	n	0.00	0	3	0	3	n	0.43	3	4	3	4	n	ENSMUSG00000048497.12	Mmgt2	chr11	protein_coding	membrane magnesium transporter 2
known_NIR_3104	chr11	6263979;6266855	6266765;6284533	+	6263979;6267080	6266978;6284533	MXE	ENSMUST00000003461.15	known	0.00	0.0	102.5	0;0	81;124	n	0.01	0.5	77.0	1;0	57;97	n	0.00	1.0	205.5	1;1	169;242	n	0.03	5.0	165.5	5;5	144;187	y	0.01	1.0	194.0	1;1	179;209	n	0.01	1.5	100.5	2;1	88;113	n	0.01	1.5	204.0	2;1	181;227	n	0.02	2.5	117.0	1;4	104;130	n	0.00	0.0	119.5	0;0	107;132	n	0.01	1.5	170.5	0;3	148;193	n	0.01	1.5	102.5	3;0	106;99	n	0.02	2.5	153.5	2;3	147;160	y	ENSMUSG00000020456.18	Ogdh	chr11	protein_coding	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)
known_NIR_3105	chr11	62770542	62772763	+	62770421	62772763	A5SS	ENSMUST00000014321.5	known	0.02	1	63	1	63	n	0.05	2	42	2	42	y	0.08	8	88	8	88	y	0.06	4	63	4	63	y	0.06	4	68	4	68	y	0.03	2	68	2	68	y	0.09	6	61	6	61	y	0.03	2	74	2	74	y	0.00	0	44	0	44	n	0.04	4	90	4	90	y	0.08	3	36	3	36	y	0.00	0	52	0	52	n	ENSMUSG00000014177.11	Tvp23b	chr11	protein_coding	trans-golgi network vesicle protein 23B
known_NIR_3106	chr11	6339513	6345125	+	6339140	6345125	A5SS	ENSMUST00000109787.8	known	0.78	7	2	7	2	n	1.00	2	0	2	0	n	1.00	11	0	11	0	n	0.85	11	2	11	2	y	1.00	11	0	11	0	n	1.00	9	0	9	0	n	1.00	13	0	13	0	n	0.71	5	2	5	2	n	0.75	3	1	3	1	n	0.79	11	3	11	3	y	0.33	1	2	1	2	n	0.44	4	5	4	5	n	ENSMUSG00000041164.16	Zmiz2	chr11	protein_coding	zinc finger, MIZ-type containing 2
known_NIR_3107	chr11	6345872	6346328	+	6345872	6346232	A3SS	ENSMUST00000109787.8	known	0.46	16	19	16	19	y	0.08	3	35	3	35	y	0.27	8	22	8	22	y	0.20	7	28	7	28	y	0.14	5	32	5	32	y	0.35	9	17	9	17	y	0.18	6	27	6	27	y	0.19	3	13	3	13	y	0.24	5	16	5	16	y	0.29	10	24	10	24	y	0.33	8	16	8	16	y	0.36	10	18	10	18	y	ENSMUSG00000041164.16	Zmiz2	chr11	protein_coding	zinc finger, MIZ-type containing 2
known_NIR_3108	chr11	6347686	6348556	+	6347686;6348339	6348262;6348556	ES	ENSMUST00000109787.8	known	0.04	1	26.5	1	28;25	n	0.00	0	15.5	0	15;16	n	0.04	1	22.0	1	28;16	n	0.00	0	37.5	0	34;41	n	0.05	2	40.5	2	50;31	y	0.06	1	17.0	1	18;16	n	0.09	4	39.0	4	36;42	y	0.00	0	14.5	0	20;9	n	0.08	2	23.0	2	25;21	y	0.00	0	41.0	0	44;38	n	0.00	0	28.5	0	28;29	n	0.04	1	26.0	1	31;21	n	ENSMUSG00000041164.16	Zmiz2	chr11	protein_coding	zinc finger, MIZ-type containing 2
known_NIR_3109	chr11	6365984	6368101	+	6365979	6368101	A5SS	ENSMUST00000132846.2	known	0.00	1	3588	1	3588	n	0.00	1	3424	1	3424	n	0.00	3	4138	3	4138	y	0.00	3	3723	3	3723	y	0.00	2	4361	2	4361	y	0.00	2	2062	2	2062	y	0.00	3	4378	3	4378	y	0.00	3	2194	3	2194	y	0.00	1	3588	1	3588	n	0.00	2	5293	2	5293	y	0.00	7	4277	7	4277	y	0.00	2	4846	2	4846	y	ENSMUSG00000071866.13	Ppia	chr11	protein_coding	peptidylprolyl isomerase A
known_NIR_3110	chr11	6379225	6389376	-	6379225;6383837	6383724;6389376	ES	ENSMUST00000109737.9	known	0.04	6	160.0	6	148;172	y	0.07	12	156.5	12	164;149	y	0.01	2	133.0	2	115;151	y	0.05	9	166.5	9	138;195	y	0.06	12	192.5	12	158;227	y	0.02	2	88.0	2	81;95	y	0.06	13	220.5	13	205;236	y	0.03	3	87.5	3	80;95	y	0.04	6	148.0	6	128;168	y	0.04	12	271.5	12	227;316	y	0.06	12	193.5	12	196;191	y	0.07	17	238.0	17	231;245	y	ENSMUSG00000041126.17	H2az2	chr11	protein_coding	H2A.Z histone variant 2
known_NIR_3111	chr11	64883180	64883265	+	64883185	64883265	A5SS	ENSMUST00000071891.12	known	0.02	1	41	1	41	n	0.03	1	31	1	31	n	0.05	2	40	2	40	y	0.12	5	38	5	38	y	0.02	1	53	1	53	n	0.00	0	26	0	26	n	0.03	1	38	1	38	n	0.10	1	9	1	9	n	0.00	0	24	0	24	n	0.03	2	62	2	62	y	0.00	0	31	0	31	n	0.00	0	56	0	56	n	ENSMUSG00000020549.15	Elac2	chr11	protein_coding	elaC ribonuclease Z 2
known_NIR_3112	chr11	6497029	6534520	+	6497029;6520137	6519964;6534520	ES	ENSMUST00000000388.15	known	0.05	2	38.0	2	23;53	y	0.10	3	26.5	3	19;34	y	0.06	5	73.0	5	48;98	y	0.08	4	45.5	4	29;62	y	0.06	4	60.5	4	28;93	y	0.07	3	37.5	3	26;49	y	0.02	1	60.5	1	44;77	n	0.05	2	41.5	2	28;55	y	0.19	7	30.5	7	13;48	y	0.11	6	50.5	6	21;80	y	0.00	0	34.0	0	18;50	n	0.16	8	40.5	8	20;61	y	ENSMUSG00000000378.16	Ccm2	chr11	protein_coding	cerebral cavernous malformation 2
known_NIR_3113	chr11	6511241	6519964	+	6497029	6519964	A5SS	ENSMUST00000000388.15	known	0.00	0	23	0	23	n	0.10	2	19	2	19	y	0.00	0	48	0	48	n	0.09	3	29	3	29	y	0.03	1	28	1	28	n	0.00	0	26	0	26	n	0.00	0	44	0	44	n	0.00	0	28	0	28	n	0.00	0	13	0	13	n	0.00	0	21	0	21	n	0.10	2	18	2	18	y	0.00	0	20	0	20	n	ENSMUSG00000000378.16	Ccm2	chr11	protein_coding	cerebral cavernous malformation 2
known_NIR_3114	chr11	6535217	6540753	+	6535217	6539432	3pMXE	ENSMUST00000159007.8	known	0.00	0	58	0	58	n	0.00	0	51	0	51	n	0.00	0	98	0	98	n	0.00	0	67	0	67	n	0.02	2	104	2	104	y	0.01	1	71	1	71	n	0.00	0	101	0	101	n	0.00	0	62	0	62	n	0.00	0	49	0	49	n	0.02	2	87	2	87	y	0.01	1	85	1	85	n	0.01	1	87	1	87	n	ENSMUSG00000000378.16	Ccm2	chr11	protein_coding	cerebral cavernous malformation 2
known_NIR_3115	chr11	6535217	6540753	+	6535217;6539568	6539432;6540753	ES	ENSMUST00000000388.15	known	0.00	0	70.0	0	58;82	n	0.00	0	50.0	0	51;49	n	0.00	0	93.5	0	98;89	n	0.00	0	56.0	0	67;45	n	0.02	2	93.0	2	104;82	y	0.02	1	54.5	1	71;38	n	0.00	0	89.5	0	101;78	n	0.00	0	53.0	0	62;44	n	0.00	0	49.0	0	49;49	n	0.02	2	86.0	2	87;85	y	0.01	1	76.0	1	85;67	n	0.01	1	85.0	1	87;83	n	ENSMUSG00000000378.16	Ccm2	chr11	protein_coding	cerebral cavernous malformation 2
known_NIR_3116	chr11	65610429	65647095	-	65610429;65626192	65626018;65647095	ES	ENSMUST00000046963.10	known	0.03	1	34.5	1	37;32	n	0.11	3	25.0	3	29;21	y	0.02	2	78.5	2	73;84	y	0.05	3	62.0	3	57;67	y	0.05	4	72.0	4	74;70	y	0.00	0	46.5	0	54;39	n	0.04	2	54.0	2	63;45	y	0.05	3	55.0	3	65;45	y	0.00	0	29.5	0	34;25	n	0.08	6	66.0	6	72;60	y	0.07	3	37.0	3	38;36	y	0.07	5	62.0	5	57;67	y	ENSMUSG00000033352.12	Map2k4	chr11	protein_coding	mitogen-activated protein kinase kinase 4
known_NIR_3117	chr11	65647197;65666591	65666559;65678962	-	65647197	65678962	cassetteExon	ENSMUST00000046963.10	known	0.23	8.5	29	10;7	29	y	0.33	3.0	6	3;3	6	y	0.33	15.5	32	18;13	32	y	0.24	11.0	35	11;11	35	y	0.16	7.0	38	6;8	38	y	0.25	8.5	26	10;7	26	y	0.32	9.0	19	10;8	19	y	0.24	5.0	16	6;4	16	y	0.35	7.0	13	9;5	13	y	0.27	8.0	22	10;6	22	y	0.05	1.0	18	0;2	18	n	0.23	7.5	25	8;7	25	y	ENSMUSG00000033352.12	Map2k4	chr11	protein_coding	mitogen-activated protein kinase kinase 4
known_NIR_3118	chr11	6569063	6569556	-	6569110	6569556	A3SS	ENSMUST00000156969.8	known	0.00	0	75	0	75	n	0.00	0	66	0	66	n	0.00	0	93	0	93	n	0.03	2	57	2	57	y	0.00	0	86	0	86	n	0.00	0	27	0	27	n	0.00	0	66	0	66	n	0.00	0	36	0	36	n	0.00	0	52	0	52	n	0.00	0	66	0	66	n	0.00	0	86	0	86	n	0.00	0	75	0	75	n	ENSMUSG00000000384.16	Tbrg4	chr11	protein_coding	transforming growth factor beta regulated gene 4
known_NIR_3119	chr11	6570221	6570742	-	6570143	6570742	A3SS	ENSMUST00000156969.8	known	0.16	14	76	14	76	y	0.33	19	39	19	39	y	0.13	10	67	10	67	y	0.06	4	66	4	66	y	0.25	21	63	21	63	y	0.07	4	51	4	51	y	0.10	7	62	7	62	y	0.26	10	28	10	28	y	0.09	5	49	5	49	y	0.13	11	72	11	72	y	0.12	9	66	9	66	y	0.19	15	63	15	63	y	ENSMUSG00000000384.16	Tbrg4	chr11	protein_coding	transforming growth factor beta regulated gene 4
known_NIR_3120	chr11	6575213	6575384	-	6575213	6575965	A5SS	ENSMUST00000156969.8	known	0.04	1	26	1	26	n	0.04	1	26	1	26	n	0.00	0	44	0	44	n	0.14	5	31	5	31	y	0.03	1	37	1	37	n	0.00	0	17	0	17	n	0.00	0	37	0	37	n	0.06	2	34	2	34	y	0.00	0	27	0	27	n	0.00	0	47	0	47	n	0.00	0	31	0	31	n	0.00	0	45	0	45	n	ENSMUSG00000000384.16	Tbrg4	chr11	protein_coding	transforming growth factor beta regulated gene 4
known_NIR_3121	chr11	6575213	6576023	-	6575213	6575965	A5SS	ENSMUST00000156969.8	known	0.00	0	26	0	26	n	0.00	0	26	0	26	n	0.06	3	44	3	44	y	0.00	0	31	0	31	n	0.00	0	37	0	37	n	0.00	0	17	0	17	n	0.00	0	37	0	37	n	0.00	0	34	0	34	n	0.04	1	27	1	27	n	0.04	2	47	2	47	y	0.06	2	31	2	31	y	0.00	0	45	0	45	n	ENSMUSG00000000384.16	Tbrg4	chr11	protein_coding	transforming growth factor beta regulated gene 4
known_NIR_3122	chr11	66931161	66932307	-	66931161	66932219	A5SS	ENSMUST00000146338.8	known	0.85	39	7	39	7	y	0.93	37	3	37	3	y	0.97	59	2	59	2	y	0.88	45	6	45	6	y	0.94	48	3	48	3	y	0.94	31	2	31	2	y	0.92	59	5	59	5	y	0.92	33	3	33	3	y	0.95	42	2	42	2	y	0.89	47	6	47	6	y	0.98	51	1	51	1	n	0.96	67	3	67	3	y	ENSMUSG00000020910.17	Adprm	chr11	protein_coding	ADP-ribose/CDP-alcohol diphosphatase, manganese dependent
known_NIR_3123	chr11	66932933	66943361	-	66932933;66942604	66942507;66943361	ES	ENSMUST00000146338.8	known	0.07	1	12.5	1	19;6	n	0.00	0	22.0	0	28;16	n	0.25	11	33.5	11	37;30	y	0.14	4	24.0	4	24;24	y	0.11	5	41.0	5	49;33	y	0.00	0	19.0	0	23;15	n	0.18	7	32.0	7	33;31	y	0.14	4	24.0	4	23;25	y	0.12	3	21.5	3	24;19	y	0.11	5	38.5	5	51;26	y	0.11	4	31.5	4	39;24	y	0.07	3	40.5	3	52;29	y	ENSMUSG00000020910.17	Adprm	chr11	protein_coding	ADP-ribose/CDP-alcohol diphosphatase, manganese dependent
known_NIR_3124	chr11	67091268	67092672	+	67091268	67092668	A3SS	ENSMUST00000124516.8	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.15	32	183	32	183	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000056328.15	Myh1	chr11	protein_coding	myosin, heavy polypeptide 1, skeletal muscle, adult
known_NIR_3125	chr11	67857539	67860598	+	67857343	67860598	A5SS	ENSMUST00000021285.14	known	0.00	0	37	0	37	n	0.00	0	54	0	54	n	0.00	0	54	0	54	n	0.04	2	48	2	48	y	0.00	0	46	0	46	n	0.04	1	26	1	26	n	0.01	1	71	1	71	n	0.00	0	28	0	28	n	0.00	0	59	0	59	n	0.00	0	81	0	81	n	0.00	0	61	0	61	n	0.00	0	54	0	54	n	ENSMUSG00000020903.14	Stx8	chr11	protein_coding	syntaxin 8
known_NIR_3126	chr11	67864097	67902141	+	67875499	67902141	A5SS&ES	ENSMUST00000021285.14	known	0.02	2	87	2	87	y	0.01	1	90	1	90	n	0.07	6	81	6	81	y	0.03	3	89	3	89	y	0.03	3	111	3	111	y	0.00	0	64	0	64	n	0.03	3	114	3	114	y	0.05	3	53	3	53	y	0.03	2	68	2	68	y	0.05	7	122	7	122	y	0.00	0	104	0	104	n	0.02	2	90	2	90	y	ENSMUSG00000020903.14	Stx8	chr11	protein_coding	syntaxin 8
known_NIR_3127	chr11	67875499	67877151	+	67875499	67902141	A3SS	ENSMUST00000021285.14	known	0.01	1	87	1	87	n	0.00	0	90	0	90	n	0.02	2	81	2	81	y	0.00	0	89	0	89	n	0.02	2	111	2	111	y	0.04	3	64	3	64	y	0.03	4	114	4	114	y	0.00	0	53	0	53	n	0.01	1	68	1	68	n	0.02	2	122	2	122	y	0.02	2	104	2	104	y	0.00	0	90	0	90	n	ENSMUSG00000020903.14	Stx8	chr11	protein_coding	syntaxin 8
known_NIR_3128	chr11	68713491;68717030	68716996;68720741	-	68713491	68720741	cassetteExon	ENSMUST00000018880.14	known	0.18	10.0	47	9;11	47	y	0.18	8.0	36	8;8	36	y	0.37	28.5	48	29;28	48	y	0.07	3.5	49	2;5	49	y	0.29	15.0	36	14;16	36	y	0.36	13.0	23	11;15	23	y	0.29	17.0	42	17;17	42	y	0.20	8.5	34	7;10	34	y	0.18	5.5	25	5;6	25	y	0.09	6.5	65	6;7	65	y	0.11	6.0	48	4;8	48	y	0.15	9.0	50	7;11	50	y	ENSMUSG00000018736.15	Ndel1	chr11	protein_coding	nudE neurodevelopment protein 1 like 1
known_NIR_3129	chr11	68792583	68793096	+	68792450	68793096	A5SS	ENSMUST00000073471.13	known	0.00	2	765	2	765	y	0.00	1	815	1	815	n	0.00	0	1014	0	1014	n	0.00	0	733	0	733	n	0.00	1	1221	1	1221	n	0.00	0	609	0	609	n	0.00	0	1076	0	1076	n	0.00	0	591	0	591	n	0.00	2	760	2	760	y	0.00	0	1154	0	1154	n	0.00	2	1036	2	1036	y	0.00	0	1028	0	1028	n	ENSMUSG00000060938.15	Rpl26	chr11	protein_coding	ribosomal protein L26
known_NIR_3130	chr11	68792638	68793096	+	68792450	68793096	A5SS	ENSMUST00000073471.13	known	0.01	6	765	6	765	y	0.00	4	815	4	815	y	0.00	5	1014	5	1014	y	0.00	3	733	3	733	y	0.00	5	1221	5	1221	y	0.00	2	609	2	609	y	0.00	4	1076	4	1076	y	0.01	5	591	5	591	y	0.00	1	760	1	760	n	0.00	4	1154	4	1154	y	0.01	6	1036	6	1036	y	0.00	4	1028	4	1028	y	ENSMUSG00000060938.15	Rpl26	chr11	protein_coding	ribosomal protein L26
known_NIR_3131	chr11	68793262	68794005	+	68793268	68794005	A5SS	ENSMUST00000073471.13	known	0.00	0	2287	0	2287	n	0.00	0	2321	0	2321	n	0.00	0	2544	0	2544	n	0.00	0	1876	0	1876	n	0.00	0	2963	0	2963	n	0.00	0	1505	0	1505	n	0.00	0	2818	0	2818	n	0.00	0	1497	0	1497	n	0.03	51	1870	51	1870	y	0.03	70	2664	70	2664	y	0.00	0	2520	0	2520	n	0.00	0	2497	0	2497	n	ENSMUSG00000060938.15	Rpl26	chr11	protein_coding	ribosomal protein L26
known_NIR_3132	chr11	68794145	68797412	+	68794145	68795191	3pMXE	ENSMUST00000073471.13	known	0.00	1	2646	1	2646	n	0.00	3	3078	3	3078	y	0.00	1	3107	1	3107	n	0.00	0	2039	0	2039	n	0.00	6	3324	6	3324	y	0.00	3	1770	3	1770	y	0.00	5	3511	5	3511	y	0.00	2	1784	2	1784	y	0.00	3	2172	3	2172	y	0.00	0	3188	0	3188	n	0.00	3	2877	3	2877	y	0.00	5	3037	5	3037	y	ENSMUSG00000060938.15	Rpl26	chr11	protein_coding	ribosomal protein L26
known_NIR_3133	chr11	68863854	68863964	-	68863854	68863943	A5SS	ENSMUST00000132093.8	known	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.25	3	9	3	9	y	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	16	0	16	n	0.13	2	13	2	13	y	0.00	0	22	0	22	n	ENSMUSG00000032892.15	Rangrf	chr11	protein_coding	RAN guanine nucleotide release factor
known_NIR_3134	chr11	68922015	68922237	+	68922015	68922240	A3SS	ENSMUST00000021278.14	known	0.14	1	6	1	6	n	0.67	4	2	4	2	n	1.00	3	0	3	0	n	0.50	2	2	2	2	n	0.33	1	2	1	2	n	0.50	2	2	2	2	n	0.50	3	3	3	3	n	0.00	0	4	0	4	n	0.80	4	1	4	1	n	0.67	4	2	4	2	n	0.50	3	3	3	3	n	0.50	5	5	5	5	y	ENSMUSG00000020898.19	Ctc1	chr11	protein_coding	CTS telomere maintenance complex component 1
known_NIR_3135	chr11	68989834	68991335	+	68986129	68991335	A5SS	ENSMUST00000101004.9	known	0.11	2	17	2	17	y	0.20	2	8	2	8	y	0.25	8	24	8	24	y	0.23	6	20	6	20	y	0.31	4	9	4	9	y	0.17	2	10	2	10	y	0.27	4	11	4	11	y	0.29	2	5	2	5	n	0.22	2	7	2	7	n	0.06	1	16	1	16	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	ENSMUSG00000020893.18	Per1	chr11	protein_coding	period circadian clock 1
known_NIR_3136	chr11	68992398	68992561	+	68992398	68992501	A3SS	ENSMUST00000101004.9	known	0.00	0	40	0	40	n	0.15	5	29	5	29	y	0.04	3	74	3	74	y	0.00	0	56	0	56	n	0.00	0	35	0	35	n	0.00	0	15	0	15	n	0.09	4	42	4	42	y	0.00	0	32	0	32	n	0.00	0	14	0	14	n	0.05	2	39	2	39	y	0.00	0	13	0	13	n	0.00	0	19	0	19	n	ENSMUSG00000020893.18	Per1	chr11	protein_coding	period circadian clock 1
known_NIR_3137	chr11	69191141	69193920	-	69191141;69193792	69193678;69193920	ES	ENSMUST00000123176.8	known	0.00	0	14.0	0	18;10	n	0.00	0	16.0	0	17;15	n	0.00	0	14.0	0	16;12	n	0.00	0	16.5	0	16;17	n	0.00	0	17.5	0	20;15	n	0.00	0	4.5	0	2;7	n	0.00	0	19.0	0	15;23	n	0.00	0	7.5	0	10;5	n	0.00	0	13.5	0	15;12	n	0.00	0	20.5	0	17;24	n	0.00	0	9.5	0	7;12	n	0.12	2	14.0	2	15;13	y	ENSMUSG00000032782.20	Cntrob	chr11	protein_coding	centrobin, centrosomal BRCA2 interacting protein
known_NIR_3138	chr11	69191141	69193920	-	69193792	69193920	3pMXE	ENSMUST00000156175.2	known	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.00	0	17	0	17	n	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.00	0	23	0	23	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	24	0	24	n	0.00	0	12	0	12	n	0.13	2	13	2	13	y	ENSMUSG00000032782.20	Cntrob	chr11	protein_coding	centrobin, centrosomal BRCA2 interacting protein
known_NIR_3139	chr11	69215291	69215680	+	69215291	69215650	A3SS	ENSMUST00000102602.8	known	0.00	0	212	0	212	n	0.00	0	250	0	250	n	0.01	4	294	4	294	y	0.00	0	218	0	218	n	0.00	0	331	0	331	n	0.01	1	199	1	199	n	0.00	0	358	0	358	n	0.00	0	171	0	171	n	0.00	0	219	0	219	n	0.00	0	292	0	292	n	0.00	1	235	1	235	n	0.00	0	285	0	285	n	ENSMUSG00000049299.15	Trappc1	chr11	protein_coding	trafficking protein particle complex 1
known_NIR_3140	chr11	69215788	69216384	+	69215788	69216265	A3SS	ENSMUST00000102602.8	known	0.00	0	215	0	215	n	0.01	3	224	3	224	y	0.00	1	259	1	259	n	0.00	0	218	0	218	n	0.01	3	292	3	292	y	0.01	1	174	1	174	n	0.01	2	289	2	289	y	0.00	0	150	0	150	n	0.02	4	206	4	206	y	0.00	1	248	1	248	n	0.01	2	242	2	242	y	0.00	0	284	0	284	n	ENSMUSG00000049299.15	Trappc1	chr11	protein_coding	trafficking protein particle complex 1
known_NIR_3141	chr11	69236460	69237398	-	69236460	69237444	A5SS	ENSMUST00000122992.2	known	0.22	13	46	13	46	y	0.18	12	55	12	55	y	0.16	18	94	18	94	y	0.22	18	63	18	63	y	0.15	16	92	16	92	y	0.14	9	56	9	56	y	0.21	23	85	23	85	y	0.24	15	48	15	48	y	0.16	11	58	11	58	y	0.26	25	70	25	70	y	0.26	22	63	22	63	y	0.19	14	58	14	58	y	ENSMUSG00000018474.19	Chd3	chr11	protein_coding	chromodomain helicase DNA binding protein 3
known_NIR_3142	chr11	69239347	69239747	-	69239347	69239536	5pMXE	ENSMUST00000238797.2	known	0.12	5	37	5	37	y	0.22	9	32	9	32	y	0.43	40	54	40	54	y	0.16	11	57	11	57	y	0.24	26	82	26	82	y	0.35	14	26	14	26	y	0.20	13	51	13	51	y	0.13	7	45	7	45	y	0.19	10	43	10	43	y	0.19	15	63	15	63	y	0.10	7	64	7	64	y	0.21	8	30	8	30	y	ENSMUSG00000018474.19	Chd3	chr11	protein_coding	chromodomain helicase DNA binding protein 3
known_NIR_3143	chr11	69239347	69239747	-	69239347;69239637	69239536;69239747	ES	ENSMUST00000108661.8	known	0.07	5	69.0	5	37;101	y	0.13	9	60.0	9	32;88	y	0.31	40	87.0	40	54;120	y	0.10	11	95.5	11	57;134	y	0.18	26	121.0	26	82;160	y	0.21	14	52.0	14	26;78	y	0.12	13	94.0	13	51;137	y	0.09	7	69.0	7	45;93	y	0.12	10	76.0	10	43;109	y	0.11	15	116.0	15	63;169	y	0.07	7	96.5	7	64;129	y	0.11	8	64.0	8	30;98	y	ENSMUSG00000018474.19	Chd3	chr11	protein_coding	chromodomain helicase DNA binding protein 3
known_NIR_3144	chr11	69252050	69252211	-	69252068	69252211	A3SS	ENSMUST00000108661.8	known	0.64	27	15	27	15	y	0.58	22	16	22	16	y	0.63	67	39	67	39	y	0.65	64	34	64	34	y	0.61	82	52	82	52	y	0.85	50	9	50	9	y	0.70	54	23	54	23	y	0.66	51	26	51	26	y	0.73	54	20	54	20	y	0.59	50	35	50	35	y	0.55	26	21	26	21	y	0.66	54	28	54	28	y	ENSMUSG00000018474.19	Chd3	chr11	protein_coding	chromodomain helicase DNA binding protein 3
known_NIR_3145	chr11	69252349	69252497	-	69252361	69252497	A3SS	ENSMUST00000108661.8	known	0.06	2	33	2	33	y	0.00	0	30	0	30	n	0.03	2	64	2	64	y	0.01	1	67	1	67	n	0.03	3	92	3	92	y	0.09	2	21	2	21	y	0.00	0	67	0	67	n	0.02	1	48	1	48	n	0.02	1	40	1	40	n	0.07	6	77	6	77	y	0.00	0	22	0	22	n	0.02	1	47	1	47	n	ENSMUSG00000018474.19	Chd3	chr11	protein_coding	chromodomain helicase DNA binding protein 3
known_NIR_3146	chr11	69286798	69286974	+	69286798	69287003	A3SS	ENSMUST00000144531.2	known	0.03	5	138	5	138	y	0.00	0	126	0	126	n	0.00	0	107	0	107	n	0.00	0	132	0	132	n	0.00	0	193	0	193	n	0.00	0	78	0	78	n	0.00	0	183	0	183	n	0.00	0	84	0	84	n	0.00	0	118	0	118	n	0.01	2	189	2	189	y	0.00	0	144	0	144	n	0.00	0	137	0	137	n	ENSMUSG00000059278.10	Naa38	chr11	protein_coding	N(alpha)-acetyltransferase 38, NatC auxiliary subunit
known_NIR_3147	chr11	69286798	69287003	+	69286507	69287003	A5SS	ENSMUST00000142126.2	known	1.00	138	0	138	0	n	0.97	126	4	126	4	y	0.96	107	4	107	4	y	0.95	132	7	132	7	y	0.97	193	5	193	5	y	0.97	78	2	78	2	y	0.94	183	12	183	12	y	1.00	84	0	84	0	n	0.95	118	6	118	6	y	0.92	189	17	189	17	y	0.97	144	4	144	4	y	0.95	137	7	137	7	y	ENSMUSG00000059278.10	Naa38	chr11	protein_coding	N(alpha)-acetyltransferase 38, NatC auxiliary subunit
known_NIR_3148	chr11	69453683	69454130	-	69453683	69454146	A5SS	ENSMUST00000155894.2	known	1.00	25	0	25	0	n	0.95	19	1	19	1	n	0.89	17	2	17	2	y	1.00	31	0	31	0	n	1.00	28	0	28	0	n	1.00	8	0	8	0	n	1.00	28	0	28	0	n	1.00	15	0	15	0	n	1.00	19	0	19	0	n	0.88	35	5	35	5	y	0.96	23	1	23	1	n	0.95	18	1	18	1	n	ENSMUSG00000041346.12	Wrap53	chr11	protein_coding	WD repeat containing, antisense to Trp53
known_NIR_3149	chr11	69481588	69482176	+	69481588	69482080	A3SS	ENSMUST00000171247.8	known	0.90	55	6	55	6	y	0.98	49	1	49	1	n	0.97	56	2	56	2	y	0.88	53	7	53	7	y	0.93	56	4	56	4	y	1.00	43	0	43	0	n	0.98	48	1	48	1	n	0.91	32	3	32	3	y	0.98	48	1	48	1	n	1.00	40	0	40	0	n	1.00	37	0	37	0	n	1.00	46	0	46	0	n	ENSMUSG00000059552.14	Trp53	chr11	protein_coding	transformation related protein 53
known_NIR_3150	chr11	69548037	69548762	-	69548669	69548762	A3SS&ES	ENSMUST00000018905.12	known	0.02	4	168	4	168	y	0.00	0	145	0	145	n	0.00	0	157	0	157	n	0.00	0	203	0	203	n	0.01	2	227	2	227	y	0.00	0	116	0	116	n	0.00	0	233	0	233	n	0.03	3	109	3	109	y	0.00	0	156	0	156	n	0.02	6	259	6	259	y	0.02	4	178	4	178	y	0.02	4	216	4	216	y	ENSMUSG00000018761.15	Mpdu1	chr11	protein_coding	mannose-P-dolichol utilization defect 1
known_NIR_3151	chr11	69548669	69549392	-	69548669	69548762	5pMXE	ENSMUST00000127118.2	known	0.08	15	168	15	168	y	0.06	9	145	9	145	y	0.07	11	157	11	157	y	0.07	16	203	16	203	y	0.04	10	227	10	227	y	0.01	1	116	1	116	n	0.04	9	233	9	233	y	0.02	2	109	2	109	y	0.07	11	156	11	156	y	0.04	10	259	10	259	y	0.05	10	178	10	178	y	0.03	6	216	6	216	y	ENSMUSG00000018761.15	Mpdu1	chr11	protein_coding	mannose-P-dolichol utilization defect 1
known_NIR_3152	chr11	69548669	69549392	-	69548669;69548847	69548762;69549392	ES	ENSMUST00000018905.12	known	0.08	15	175.5	15	168;183	y	0.05	9	160.5	9	145;176	y	0.06	11	170.0	11	157;183	y	0.07	16	212.0	16	203;221	y	0.04	10	229.5	10	227;232	y	0.01	1	131.5	1	116;147	n	0.04	9	223.5	9	233;214	y	0.02	2	103.0	2	109;97	y	0.06	11	162.5	11	156;169	y	0.04	10	264.5	10	259;270	y	0.05	10	199.0	10	178;220	y	0.03	6	222.0	6	216;228	y	ENSMUSG00000018761.15	Mpdu1	chr11	protein_coding	mannose-P-dolichol utilization defect 1
known_NIR_3153	chr11	69548669	69549392	-	69548669;69548882	69548762;69549392	ES	ENSMUST00000148242.8	known	0.15	15	85.5	15	168;3	y	0.10	9	77.0	9	145;9	y	0.12	11	79.0	11	157;1	n	0.13	16	107.5	16	203;12	y	0.08	10	121.0	10	227;15	y	0.02	1	59.5	1	116;3	n	0.07	9	121.5	9	233;10	y	0.03	2	56.0	2	109;3	y	0.12	11	79.5	11	156;3	y	0.07	10	136.0	10	259;13	y	0.09	10	98.0	10	178;18	y	0.05	6	112.0	6	216;8	y	ENSMUSG00000018761.15	Mpdu1	chr11	protein_coding	mannose-P-dolichol utilization defect 1
known_NIR_3154	chr11	69548669	69549392	-	69548847	69549392	A3SS&ES	ENSMUST00000155200.8	known	0.08	15	183	15	183	y	0.05	9	176	9	176	y	0.06	11	183	11	183	y	0.07	16	221	16	221	y	0.04	10	232	10	232	y	0.01	1	147	1	147	n	0.04	9	214	9	214	y	0.02	2	97	2	97	y	0.06	11	169	11	169	y	0.04	10	270	10	270	y	0.04	10	220	10	220	y	0.03	6	228	6	228	y	ENSMUSG00000018761.15	Mpdu1	chr11	protein_coding	mannose-P-dolichol utilization defect 1
known_NIR_3155	chr11	69548882	69549392	-	69548847	69549392	A3SS	ENSMUST00000018905.12	known	0.02	3	183	3	183	y	0.05	9	176	9	176	y	0.01	1	183	1	183	n	0.05	12	221	12	221	y	0.06	15	232	15	232	y	0.02	3	147	3	147	y	0.04	10	214	10	214	y	0.03	3	97	3	97	y	0.02	3	169	3	169	y	0.05	13	270	13	270	y	0.08	18	220	18	220	y	0.03	8	228	8	228	y	ENSMUSG00000018761.15	Mpdu1	chr11	protein_coding	mannose-P-dolichol utilization defect 1
known_NIR_3156	chr11	69561802	69562431	-	69561802	69563105	A5SS	ENSMUST00000163666.3	known	0.01	4	301	4	301	y	0.00	0	251	0	251	n	0.00	0	633	0	633	n	0.00	0	370	0	370	n	0.01	3	417	3	417	y	0.00	0	289	0	289	n	0.00	0	405	0	405	n	0.00	0	301	0	301	n	0.00	0	308	0	308	n	0.01	3	392	3	392	y	0.00	0	346	0	346	n	0.00	2	417	2	417	y	ENSMUSG00000059796.17	Eif4a1	chr11	protein_coding	eukaryotic translation initiation factor 4A1
known_NIR_3157	chr11	69561927	69563105	-	69561802	69563105	A3SS	ENSMUST00000163666.3	known	0.00	0	301	0	301	n	0.00	0	251	0	251	n	0.00	1	633	1	633	n	0.00	0	370	0	370	n	0.00	1	417	1	417	n	0.00	0	289	0	289	n	0.00	0	405	0	405	n	0.01	2	301	2	301	y	0.00	0	308	0	308	n	0.00	0	392	0	392	n	0.00	0	346	0	346	n	0.00	0	417	0	417	n	ENSMUSG00000059796.17	Eif4a1	chr11	protein_coding	eukaryotic translation initiation factor 4A1
known_NIR_3158	chr11	69575159	69575311	-	69575162	69575311	A3SS	ENSMUST00000180587.8	known	0.60	15	10	15	10	y	0.43	12	16	12	16	y	0.40	4	6	4	6	y	0.56	10	8	10	8	y	0.48	13	14	13	14	y	0.68	13	6	13	6	y	0.38	5	8	5	8	y	0.75	3	1	3	1	n	0.75	6	2	6	2	n	0.44	7	9	7	9	y	0.50	12	12	12	12	y	0.58	14	10	14	10	y	ENSMUSG00000018752.20	Tnfsfm13	chr11	protein_coding	tumor necrosis factor (ligand) superfamily, membrane-bound member 13
known_NIR_3159	chr11	69586267	69586422	-	69586270	69586422	A3SS	ENSMUST00000180587.8	known	0.73	33	12	33	12	y	0.82	31	7	31	7	y	0.82	56	12	56	12	y	0.80	35	9	35	9	y	0.77	57	17	57	17	y	0.85	41	7	41	7	y	0.81	38	9	38	9	y	0.90	36	4	36	4	y	0.68	21	10	21	10	y	0.69	36	16	36	16	y	0.79	38	10	38	10	y	0.84	37	7	37	7	y	ENSMUSG00000018752.20	Tnfsfm13	chr11	protein_coding	tumor necrosis factor (ligand) superfamily, membrane-bound member 13
known_NIR_3160	chr11	69657463	69666202	+	69656911	69666202	A5SS	ENSMUST00000108640.8	known	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.31	4	9	4	9	y	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.50	3	3	3	3	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000018750.15	Zbtb4	chr11	protein_coding	zinc finger and BTB domain containing 4
known_NIR_3161	chr11	69662113	69666202	+	69656911	69666202	A5SS	ENSMUST00000108640.8	known	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.33	1	2	1	2	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.18	2	9	2	9	y	0.25	1	3	1	3	n	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000018750.15	Zbtb4	chr11	protein_coding	zinc finger and BTB domain containing 4
known_NIR_3162	chr11	69666268	69666688	+	69666268	69666628	A3SS	ENSMUST00000108640.8	known	1.00	7	0	7	0	n	1.00	7	0	7	0	n	0.91	10	1	10	1	n	1.00	6	0	6	0	n	0.88	15	2	15	2	y	1.00	7	0	7	0	n	1.00	8	0	8	0	n	1.00	7	0	7	0	n	1.00	4	0	4	0	n	1.00	6	0	6	0	n	1.00	4	0	4	0	n	1.00	5	0	5	0	n	ENSMUSG00000018750.15	Zbtb4	chr11	protein_coding	zinc finger and BTB domain containing 4
known_NIR_3163	chr11	69667715	69669013	+	69667715	69668298	A3SS	ENSMUST00000108640.8	known	0.46	6	7	6	7	y	0.17	1	5	1	5	n	0.06	1	15	1	15	n	0.00	0	5	0	5	n	0.18	2	9	2	9	y	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.14	1	6	1	6	n	0.14	1	6	1	6	n	0.00	0	8	0	8	n	ENSMUSG00000018750.15	Zbtb4	chr11	protein_coding	zinc finger and BTB domain containing 4
known_NIR_3164	chr11	69729475	69729746	+	69729399	69729746	A5SS	ENSMUST00000133967.8	known	0.88	712	93	712	93	y	0.85	693	118	693	118	y	0.85	549	97	549	97	y	0.89	628	75	628	75	y	0.87	811	121	811	121	y	0.86	333	53	333	53	y	0.83	779	156	779	156	y	0.87	354	52	354	52	y	0.89	572	73	572	73	y	0.90	861	92	861	92	y	0.88	720	96	720	96	y	0.89	821	103	821	103	y	ENSMUSG00000070394.11	Tmem256	chr11	protein_coding	transmembrane protein 256
known_NIR_3165	chr11	69794278	69794691	+	69794278	69794480	A3SS&ES	ENSMUST00000133203.9	known	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.06	1	16	1	16	n	0.46	6	7	6	7	y	0.09	1	10	1	10	n	0.30	3	7	3	7	y	0.07	1	14	1	14	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.25	1	3	1	3	n	ENSMUSG00000047284.15	Neurl4	chr11	protein_coding	neuralized E3 ubiquitin protein ligase 4
known_NIR_3166	chr11	69794278	69794691	+	69794545	69794691	A5SS	ENSMUST00000177160.2	known	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.05	1	21	1	21	n	0.32	6	13	6	13	y	0.04	1	22	1	22	n	0.25	3	9	3	9	y	0.12	1	7	1	7	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.00	0	18	0	18	n	0.07	1	14	1	14	n	ENSMUSG00000047284.15	Neurl4	chr11	protein_coding	neuralized E3 ubiquitin protein ligase 4
known_NIR_3167	chr11	69794278;69794545	69794480;69794691	+	69794278	69794691	cassetteExon	ENSMUST00000177138.8	known	1.00	10.0	0	6;14	0	n	1.00	8.0	0	6;10	0	n	0.95	18.5	1	16;21	1	n	0.62	10.0	6	7;13	6	y	0.94	16.0	1	10;22	1	n	0.73	8.0	3	7;9	3	y	0.91	10.5	1	14;7	1	n	1.00	7.5	0	4;11	0	n	1.00	7.5	0	6;9	0	n	1.00	12.0	0	9;15	0	n	1.00	15.0	0	12;18	0	n	0.89	8.5	1	3;14	1	n	ENSMUSG00000047284.15	Neurl4	chr11	protein_coding	neuralized E3 ubiquitin protein ligase 4
known_NIR_3168	chr11	69797429	69797556	+	69797429	69797552	A3SS	ENSMUST00000177138.8	known	0.12	2	15	2	15	y	0.00	0	12	0	12	n	0.00	0	24	0	24	n	0.00	0	20	0	20	n	0.12	3	22	3	22	y	0.00	0	7	0	7	n	0.11	2	16	2	16	y	0.00	0	19	0	19	n	0.00	0	17	0	17	n	0.00	0	17	0	17	n	0.07	1	13	1	13	n	0.07	1	14	1	14	n	ENSMUSG00000047284.15	Neurl4	chr11	protein_coding	neuralized E3 ubiquitin protein ligase 4
known_NIR_3169	chr11	69798838	69798922	+	69798832	69798922	A5SS	ENSMUST00000177138.8	known	0.52	12	11	12	11	y	0.71	10	4	10	4	y	0.60	15	10	15	10	y	0.50	11	11	11	11	y	0.60	18	12	18	12	y	0.30	3	7	3	7	y	0.42	8	11	8	11	y	0.33	4	8	4	8	y	0.30	6	14	6	14	y	0.68	15	7	15	7	y	0.52	11	10	11	10	y	0.61	19	12	19	12	y	ENSMUSG00000047284.15	Neurl4	chr11	protein_coding	neuralized E3 ubiquitin protein ligase 4
known_NIR_3170	chr11	69810162	69810275	-	69810162	69811167	A5SS	ENSMUST00000164359.8	known	0.12	3	22	3	22	y	0.14	3	18	3	18	y	0.04	1	25	1	25	n	0.00	0	20	0	20	n	0.00	0	16	0	16	n	0.04	1	24	1	24	n	0.00	0	34	0	34	n	0.00	0	16	0	16	n	0.00	0	26	0	26	n	0.11	3	25	3	25	y	0.00	0	23	0	23	n	0.10	2	19	2	19	y	ENSMUSG00000078812.11	Eif5a	chr11	protein_coding	eukaryotic translation initiation factor 5A
known_NIR_3171	chr11	69810162	69810275	-	69810162	69811627	A5SS	ENSMUST00000108612.8	known	0.43	3	4	3	4	n	0.19	3	13	3	13	y	0.11	1	8	1	8	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.20	1	4	1	4	n	0.00	0	22	0	22	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.18	3	14	3	14	y	0.00	0	10	0	10	n	0.18	2	9	2	9	y	ENSMUSG00000078812.11	Eif5a	chr11	protein_coding	eukaryotic translation initiation factor 5A
known_NIR_3172	chr11	69810162	69811627	-	69810162	69811167	A5SS&ES	ENSMUST00000164359.8	known	0.15	4	22	4	22	y	0.42	13	18	13	18	y	0.24	8	25	8	25	y	0.31	9	20	9	20	y	0.36	9	16	9	16	y	0.14	4	24	4	24	y	0.39	22	34	22	34	y	0.20	4	16	4	16	y	0.10	3	26	3	26	y	0.36	14	25	14	25	y	0.30	10	23	10	23	y	0.32	9	19	9	19	y	ENSMUSG00000078812.11	Eif5a	chr11	protein_coding	eukaryotic translation initiation factor 5A
known_NIR_3173	chr11	69810162	69811850	-	69810162	69811167	5pMXE	ENSMUST00000108610.8	known	0.15	4	22	4	22	y	0.05	1	18	1	18	n	0.07	2	25	2	25	y	0.13	3	20	3	20	y	0.00	0	16	0	16	n	0.00	0	24	0	24	n	0.06	2	34	2	34	y	0.00	0	16	0	16	n	0.10	3	26	3	26	y	0.04	1	25	1	25	n	0.00	0	23	0	23	n	0.00	0	19	0	19	n	ENSMUSG00000078812.11	Eif5a	chr11	protein_coding	eukaryotic translation initiation factor 5A
known_NIR_3174	chr11	69810162	69811850	-	69810162	69811627	5pMXE	ENSMUST00000108612.8	known	0.50	4	4	4	4	n	0.07	1	13	1	13	n	0.20	2	8	2	8	y	0.25	3	9	3	9	y	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.08	2	22	2	22	y	0.00	0	4	0	4	n	0.50	3	3	3	3	n	0.07	1	14	1	14	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	ENSMUSG00000078812.11	Eif5a	chr11	protein_coding	eukaryotic translation initiation factor 5A
known_NIR_3175	chr11	69810162	69811850	-	69810162	69811989	A5SS	ENSMUST00000108613.10	known	0.00	4	1093	4	1093	y	0.00	1	908	1	908	n	0.00	2	1377	2	1377	y	0.00	3	1253	3	1253	y	0.00	0	1395	0	1395	n	0.00	0	816	0	816	n	0.00	2	1247	2	1247	y	0.00	0	807	0	807	n	0.00	3	954	3	954	y	0.00	1	1450	1	1450	n	0.00	0	1174	0	1174	n	0.00	0	1301	0	1301	n	ENSMUSG00000078812.11	Eif5a	chr11	protein_coding	eukaryotic translation initiation factor 5A
known_NIR_3176	chr11	69810162	69811989	-	69810162	69810275	A5SS&ES	ENSMUST00000071026.10	known	1.00	1093	3	1093	3	y	1.00	908	3	908	3	y	1.00	1377	1	1377	1	n	1.00	1253	0	1253	0	n	1.00	1395	0	1395	0	n	1.00	816	1	816	1	n	1.00	1247	0	1247	0	n	1.00	807	0	807	0	n	1.00	954	0	954	0	n	1.00	1450	3	1450	3	y	1.00	1174	0	1174	0	n	1.00	1301	2	1301	2	y	ENSMUSG00000078812.11	Eif5a	chr11	protein_coding	eukaryotic translation initiation factor 5A
known_NIR_3177	chr11	69810162	69811989	-	69810162	69811167	5pMXE	ENSMUST00000108610.8	known	0.98	1093	22	1093	22	y	0.98	908	18	908	18	y	0.98	1377	25	1377	25	y	0.98	1253	20	1253	20	y	0.99	1395	16	1395	16	y	0.97	816	24	816	24	y	0.97	1247	34	1247	34	y	0.98	807	16	807	16	y	0.97	954	26	954	26	y	0.98	1450	25	1450	25	y	0.98	1174	23	1174	23	y	0.99	1301	19	1301	19	y	ENSMUSG00000078812.11	Eif5a	chr11	protein_coding	eukaryotic translation initiation factor 5A
known_NIR_3178	chr11	69810162	69811989	-	69810162	69811627	5pMXE	ENSMUST00000108612.8	known	1.00	1093	4	1093	4	y	0.99	908	13	908	13	y	0.99	1377	8	1377	8	y	0.99	1253	9	1253	9	y	0.99	1395	9	1395	9	y	1.00	816	4	816	4	y	0.98	1247	22	1247	22	y	1.00	807	4	807	4	y	1.00	954	3	954	3	y	0.99	1450	14	1450	14	y	0.99	1174	10	1174	10	y	0.99	1301	9	1301	9	y	ENSMUSG00000078812.11	Eif5a	chr11	protein_coding	eukaryotic translation initiation factor 5A
known_NIR_3179	chr11	69810162;69810304	69810275;69811989	-	69810162	69811989	cassetteExon	ENSMUST00000108613.10	known	0.00	1.5	1093	3;0	1093	n	0.00	1.5	908	3;0	908	n	0.00	0.5	1377	1;0	1377	n	0.00	0.0	1253	0;0	1253	n	0.00	0.0	1395	0;0	1395	n	0.00	3.5	816	1;6	816	n	0.00	0.0	1247	0;0	1247	n	0.00	0.0	807	0;0	807	n	0.01	5.5	954	0;11	954	n	0.00	4.5	1450	3;6	1450	y	0.00	2.5	1174	0;5	1174	n	0.00	4.5	1301	2;7	1301	y	ENSMUSG00000078812.11	Eif5a	chr11	protein_coding	eukaryotic translation initiation factor 5A
known_NIR_3180	chr11	69810162;69810304	69810275;69811989	-	69810162;69811260	69811167;69811989	MXE	ENSMUST00000043419.10	known	0.09	1.5	15.0	3;0	22;8	n	0.12	1.5	10.5	3;0	18;3	n	0.02	0.5	23.0	1;0	25;21	n	0.00	0.0	18.0	0;0	20;16	n	0.00	0.0	15.0	0;0	16;14	n	0.17	3.5	17.5	1;6	24;11	n	0.00	0.0	28.0	0;0	34;22	n	0.00	0.0	10.5	0;0	16;5	n	0.22	5.5	19.5	0;11	26;13	n	0.18	4.5	21.0	3;6	25;17	y	0.11	2.5	19.5	0;5	23;16	n	0.20	4.5	17.5	2;7	19;16	y	ENSMUSG00000078812.11	Eif5a	chr11	protein_coding	eukaryotic translation initiation factor 5A
known_NIR_3181	chr11	69810162;69811260	69811167;69811627	-	69810162	69811627	cassetteExon	ENSMUST00000108612.8	known	0.75	12.0	4	22;2	4	y	0.41	9.0	13	18;0	13	n	0.67	16.5	8	25;8	8	y	0.56	11.5	9	20;3	9	y	0.51	9.5	9	16;3	9	y	0.77	13.5	4	24;3	4	y	0.44	17.0	22	34;0	22	n	0.68	8.5	4	16;1	4	n	0.82	14.0	3	26;2	3	y	0.47	12.5	14	25;0	14	n	0.55	12.0	10	23;1	10	n	0.51	9.5	9	19;0	9	n	ENSMUSG00000078812.11	Eif5a	chr11	protein_coding	eukaryotic translation initiation factor 5A
known_NIR_3182	chr11	69810162;69811260	69811167;69811989	-	69810162	69811989	cassetteExon	ENSMUST00000108613.10	known	0.01	15.0	1093	22;8	1093	y	0.01	10.5	908	18;3	908	y	0.02	23.0	1377	25;21	1377	y	0.01	18.0	1253	20;16	1253	y	0.01	15.0	1395	16;14	1395	y	0.02	17.5	816	24;11	816	y	0.02	28.0	1247	34;22	1247	y	0.01	10.5	807	16;5	807	y	0.02	19.5	954	26;13	954	y	0.01	21.0	1450	25;17	1450	y	0.02	19.5	1174	23;16	1174	y	0.01	17.5	1301	19;16	1301	y	ENSMUSG00000078812.11	Eif5a	chr11	protein_coding	eukaryotic translation initiation factor 5A
known_NIR_3183	chr11	69811260	69811989	-	69811260	69811627	5pMXE	ENSMUST00000108611.8	known	0.80	8	2	8	2	y	1.00	3	0	3	0	n	0.72	21	8	21	8	y	0.84	16	3	16	3	y	0.82	14	3	14	3	y	0.79	11	3	11	3	y	1.00	22	0	22	0	n	0.83	5	1	5	1	n	0.87	13	2	13	2	y	1.00	17	0	17	0	n	0.94	16	1	16	1	n	1.00	16	0	16	0	n	ENSMUSG00000078812.11	Eif5a	chr11	protein_coding	eukaryotic translation initiation factor 5A
known_NIR_3184	chr11	69837510	69838770	-	69837510	69838775	A5SS	ENSMUST00000178809.8	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.11	3	24	3	24	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	ENSMUSG00000018566.15	Slc2a4	chr11	protein_coding	solute carrier family 2 (facilitated glucose transporter), member 4
known_NIR_3185	chr11	69861568	69870656	-	69866086	69870656	3pMXE	ENSMUST00000147437.3	known	0.03	3	96	3	96	y	0.02	2	86	2	86	y	0.04	5	130	5	130	y	0.01	1	85	1	85	n	0.02	2	103	2	103	y	0.00	0	81	0	81	n	0.05	4	84	4	84	y	0.00	0	60	0	60	n	0.03	2	75	2	75	y	0.02	3	147	3	147	y	0.04	5	124	5	124	y	0.02	2	97	2	97	y	ENSMUSG00000018565.18	Elp5	chr11	protein_coding	elongator acetyltransferase complex subunit 5
known_NIR_3186	chr11	69861568;69866086	69865866;69870656	-	69861568	69870656	cassetteExon	ENSMUST00000142788.8	known	0.97	93.0	3	90;96	3	y	0.98	81.0	2	76;86	2	y	0.96	131.0	5	132;130	5	y	0.99	81.5	1	78;85	1	n	0.98	105.0	2	107;103	2	y	1.00	72.5	0	64;81	0	n	0.96	89.5	4	95;84	4	y	1.00	59.0	0	58;60	0	n	0.97	74.0	2	73;75	2	y	0.98	130.5	3	114;147	3	y	0.96	112.0	5	100;124	5	y	0.98	95.0	2	93;97	2	y	ENSMUSG00000018565.18	Elp5	chr11	protein_coding	elongator acetyltransferase complex subunit 5
known_NIR_3187	chr11	69880025	69880308	+	69879765	69880308	A5SS	ENSMUST00000108593.8	known	0.00	0	201	0	201	n	0.00	0	211	0	211	n	0.00	0	274	0	274	n	0.00	0	154	0	154	n	0.00	0	236	0	236	n	0.00	0	135	0	135	n	0.01	2	250	2	250	y	0.00	0	139	0	139	n	0.00	0	149	0	149	n	0.00	0	234	0	234	n	0.00	0	173	0	173	n	0.00	0	207	0	207	n	ENSMUSG00000018559.17	Ctdnep1	chr11	protein_coding	CTD nuclear envelope phosphatase 1
known_NIR_3188	chr11	69882987	69883191	+	69882628	69883191	A5SS	ENSMUST00000018711.15	known	0.01	6	1186	6	1186	y	0.00	1	1211	1	1211	n	0.00	3	1788	3	1788	y	0.00	2	1171	2	1171	y	0.00	6	1643	6	1643	y	0.00	4	1023	4	1023	y	0.00	4	1649	4	1649	y	0.00	3	1080	3	1080	y	0.00	2	1031	2	1031	y	0.00	4	1578	4	1578	y	0.00	3	1336	3	1336	y	0.00	4	1550	4	1550	y	ENSMUSG00000018567.15	Gabarap	chr11	protein_coding	gamma-aminobutyric acid receptor associated protein
known_NIR_3189	chr11	69883269	69883502	+	69883269	69883408	A3SS	ENSMUST00000018711.15	known	0.00	2	1534	2	1534	y	0.00	0	1756	0	1756	n	0.00	0	2381	0	2381	n	0.00	0	1415	0	1415	n	0.00	0	1918	0	1918	n	0.00	0	1318	0	1318	n	0.00	0	2275	0	2275	n	0.00	0	1408	0	1408	n	0.00	0	1381	0	1381	n	0.00	0	2042	0	2042	n	0.00	0	1796	0	1796	n	0.00	0	2057	0	2057	n	ENSMUSG00000018567.15	Gabarap	chr11	protein_coding	gamma-aminobutyric acid receptor associated protein
known_NIR_3190	chr11	69887885	69888423	+	69886879	69888423	A5SS	ENSMUST00000018716.10	known	0.11	2	16	2	16	y	0.00	0	21	0	21	n	0.00	0	55	0	55	n	0.00	0	19	0	19	n	0.00	0	46	0	46	n	0.00	0	18	0	18	n	0.04	1	26	1	26	n	0.00	0	26	0	26	n	0.08	2	24	2	24	y	0.00	0	41	0	41	n	0.06	1	16	1	16	n	0.00	0	16	0	16	n	ENSMUSG00000018572.11	Phf23	chr11	protein_coding	PHD finger protein 23
known_NIR_3191	chr11	69888664	69889328	+	69888664	69889127	A3SS	ENSMUST00000018716.10	known	0.21	9	34	9	34	y	0.24	9	29	9	29	y	0.25	17	52	17	52	y	0.24	8	26	8	26	y	0.22	15	53	15	53	y	0.40	14	21	14	21	y	0.21	13	49	13	49	y	0.19	6	25	6	25	y	0.21	7	27	7	27	y	0.25	14	41	14	41	y	0.26	12	35	12	35	y	0.12	5	35	5	35	y	ENSMUSG00000018572.11	Phf23	chr11	protein_coding	PHD finger protein 23
known_NIR_3192	chr11	69905529	69905943	-	69905529;69905684	69905619;69905943	ES	ENSMUST00000102574.10	known	0.00	2	629.0	2	619;639	y	0.00	1	546.0	1	550;542	n	0.02	23	926.5	23	957;896	y	0.00	2	799.0	2	808;790	y	0.00	1	1032.0	1	1038;1026	n	0.00	2	488.5	2	509;468	y	0.00	3	1098.5	3	1121;1076	y	0.00	2	566.5	2	585;548	y	0.01	5	650.0	5	697;603	y	0.00	2	1171.0	2	1196;1146	y	0.00	1	748.5	1	748;749	n	0.00	0	771.0	0	773;769	n	ENSMUSG00000018574.15	Acadvl	chr11	protein_coding	acyl-Coenzyme A dehydrogenase, very long chain
known_NIR_3193	chr11	69945314	69945707	+	69944973	69945707	A5SS	ENSMUST00000146411.9	known	0.99	1468	17	1468	17	y	0.98	1323	29	1323	29	y	0.98	1362	28	1362	28	y	0.98	1401	32	1401	32	y	0.98	2001	42	2001	42	y	0.97	848	26	848	26	y	0.98	1897	31	1897	31	y	0.97	1003	36	1003	36	y	0.98	1311	31	1311	31	y	0.98	1897	34	1897	34	y	0.98	1381	33	1381	33	y	0.98	1535	32	1535	32	y	ENSMUSG00000020884.16	Asgr1	chr11	protein_coding	asialoglycoprotein receptor 1
known_NIR_3194	chr11	69946792	69947063	+	69946939	69947063	A5SS&ES	ENSMUST00000146411.9	known	0.00	3	2289	3	2289	y	0.00	1	2319	1	2319	n	0.00	0	2042	0	2042	n	0.00	1	2561	1	2561	n	0.00	0	3144	0	3144	n	0.00	1	1271	1	1271	n	0.00	0	3314	0	3314	n	0.00	0	1496	0	1496	n	0.00	2	2069	2	2069	y	0.00	0	3241	0	3241	n	0.00	0	2357	0	2357	n	0.00	3	2620	3	2620	y	ENSMUSG00000020884.16	Asgr1	chr11	protein_coding	asialoglycoprotein receptor 1
known_NIR_3195	chr11	69947311	69947858	+	69947311;69947770	69947684;69947858	ES	ENSMUST00000146411.9	known	0.06	120	2021.0	120	2048;1994	y	0.07	157	1984.0	157	1996;1972	y	0.05	102	1767.5	102	1805;1730	y	0.06	128	1986.0	128	2018;1954	y	0.06	163	2779.5	163	2819;2740	y	0.09	100	1038.5	100	1064;1013	y	0.04	131	2907.0	131	3029;2785	y	0.08	104	1167.0	104	1207;1127	y	0.06	125	1805.0	125	1884;1726	y	0.07	198	2810.0	198	2895;2725	y	0.05	121	2174.0	121	2209;2139	y	0.07	176	2227.0	176	2313;2141	y	ENSMUSG00000020884.16	Asgr1	chr11	protein_coding	asialoglycoprotein receptor 1
known_NIR_3196	chr11	69983616	69983809	+	69983616	69983882	A3SS	ENSMUST00000102572.8	known	0.02	9	588	9	588	y	0.02	12	553	12	553	y	0.02	8	319	8	319	y	0.03	21	649	21	649	y	0.02	15	631	15	631	y	0.04	9	218	9	218	y	0.03	25	692	25	692	y	0.03	11	308	11	308	y	0.03	18	558	18	558	y	0.03	23	807	23	807	y	0.03	18	636	18	636	y	0.04	30	805	30	805	y	ENSMUSG00000040963.16	Asgr2	chr11	protein_coding	asialoglycoprotein receptor 2
known_NIR_3197	chr11	69983616	69983809	+	69983616	69987633	A3SS	ENSMUST00000143772.8	known	0.38	9	15	9	15	y	1.00	12	0	12	0	n	1.00	8	0	8	0	n	1.00	21	0	21	0	n	1.00	15	0	15	0	n	1.00	9	0	9	0	n	1.00	25	0	25	0	n	1.00	11	0	11	0	n	0.56	18	14	18	14	y	1.00	23	0	23	0	n	1.00	18	0	18	0	n	1.00	30	0	30	0	n	ENSMUSG00000040963.16	Asgr2	chr11	protein_coding	asialoglycoprotein receptor 2
known_NIR_3198	chr11	69983616	69987633	+	69983616	69983882	A3SS&ES	ENSMUST00000102572.8	known	0.02	15	588	15	588	y	0.00	0	553	0	553	n	0.00	0	319	0	319	n	0.00	0	649	0	649	n	0.00	0	631	0	631	n	0.00	0	218	0	218	n	0.00	0	692	0	692	n	0.00	0	308	0	308	n	0.02	14	558	14	558	y	0.00	0	807	0	807	n	0.00	0	636	0	636	n	0.00	0	805	0	805	n	ENSMUSG00000040963.16	Asgr2	chr11	protein_coding	asialoglycoprotein receptor 2
known_NIR_3199	chr11	70105090	70105328	+	70105090	70105192	A3SS	ENSMUST00000126388.8	known	0.50	2	2	2	2	n	1.00	3	0	3	0	n	-	-	-	-	-	-	0.33	2	4	2	4	n	0.40	2	3	2	3	n	0.67	2	1	2	1	n	0.33	2	4	2	4	n	1.00	4	0	4	0	n	0.22	2	7	2	7	n	0.59	10	7	10	7	y	0.67	4	2	4	2	n	0.50	3	3	3	3	n	ENSMUSG00000040938.17	Slc16a11	chr11	protein_coding	solute carrier family 16 (monocarboxylic acid transporters), member 11
known_NIR_3200	chr11	70105924	70106963	+	70105924	70106110	A3SS	ENSMUST00000123716.2	known	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.18	2	9	2	9	y	0.00	0	7	0	7	n	0.08	1	12	1	12	n	0.00	0	5	0	5	n	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.00	0	21	0	21	n	0.00	0	21	0	21	n	0.04	1	22	1	22	n	0.00	0	18	0	18	n	ENSMUSG00000040938.17	Slc16a11	chr11	protein_coding	solute carrier family 16 (monocarboxylic acid transporters), member 11
known_NIR_3201	chr11	70105924	70106963	+	70105924;70106877	70106110;70106963	ES	ENSMUST00000126388.8	known	0.00	0	12.5	0	11;14	n	0.00	0	21.0	0	16;26	n	0.14	2	12.5	2	9;16	y	0.00	0	11.5	0	7;16	n	0.07	1	13.0	1	12;14	n	0.00	0	6.0	0	5;7	n	0.00	0	17.5	0	16;19	n	0.00	0	7.0	0	8;6	n	0.00	0	21.0	0	21;21	n	0.00	0	28.0	0	21;35	n	0.03	1	31.0	1	22;40	n	0.00	0	17.0	0	18;16	n	ENSMUSG00000040938.17	Slc16a11	chr11	protein_coding	solute carrier family 16 (monocarboxylic acid transporters), member 11
known_NIR_3202	chr11	70106877	70106963	+	70105924	70106963	A5SS	ENSMUST00000149880.2	known	1.00	14	0	14	0	n	1.00	26	0	26	0	n	0.89	16	2	16	2	y	1.00	16	0	16	0	n	0.93	14	1	14	1	n	1.00	7	0	7	0	n	1.00	19	0	19	0	n	1.00	6	0	6	0	n	1.00	21	0	21	0	n	1.00	35	0	35	0	n	0.98	40	1	40	1	n	1.00	16	0	16	0	n	ENSMUSG00000040938.17	Slc16a11	chr11	protein_coding	solute carrier family 16 (monocarboxylic acid transporters), member 11
known_NIR_3203	chr11	70126290	70126850	-	70126290;70126586	70126522;70126850	ES	ENSMUST00000134700.8	known	0.00	0	13.5	0	27;0	n	0.29	7	17.0	7	33;1	n	0.30	5	11.5	5	23;0	n	0.32	5	10.5	5	21;0	n	0.41	9	13.0	9	25;1	n	0.53	5	4.5	5	9;0	n	0.24	5	16.0	5	32;0	n	0.00	0	8.0	0	16;0	n	0.28	4	10.5	4	19;2	y	0.20	4	16.5	4	33;0	n	0.45	11	13.5	11	27;0	n	0.13	2	13.0	2	26;0	n	ENSMUSG00000020831.19	0610010K14Rik	chr11	protein_coding	RIKEN cDNA 0610010K14 gene
known_NIR_3204	chr11	70126290	70126850	-	70126290;70126626	70126522;70126850	ES	ENSMUST00000108578.9	known	0.00	0	36.5	0	27;46	n	0.17	7	33.5	7	33;34	y	0.16	5	26.0	5	23;29	y	0.18	5	23.5	5	21;26	y	0.19	9	38.0	9	25;51	y	0.23	5	17.0	5	9;25	y	0.10	5	46.0	5	32;60	y	0.00	0	22.0	0	16;28	n	0.15	4	23.0	4	19;27	y	0.08	4	44.5	4	33;56	y	0.25	11	33.0	11	27;39	y	0.05	2	36.5	2	26;47	y	ENSMUSG00000020831.19	0610010K14Rik	chr11	protein_coding	RIKEN cDNA 0610010K14 gene
known_NIR_3205	chr11	70126290	70126850	-	70126294	70126850	A3SS	ENSMUST00000108579.8	known	0.00	0	22	0	22	n	0.17	7	34	7	34	y	0.12	5	38	5	38	y	0.16	5	27	5	27	y	0.23	9	30	9	30	y	0.20	5	20	5	20	y	0.10	5	43	5	43	y	0.00	0	15	0	15	n	0.16	4	21	4	21	y	0.12	4	30	4	30	y	0.33	11	22	11	22	y	0.05	2	35	2	35	y	ENSMUSG00000020831.19	0610010K14Rik	chr11	protein_coding	RIKEN cDNA 0610010K14 gene
known_NIR_3206	chr11	70126290	70126850	-	70126626	70126850	A3SS	ENSMUST00000135390.2	known	0.00	0	46	0	46	n	0.17	7	34	7	34	y	0.15	5	29	5	29	y	0.16	5	26	5	26	y	0.15	9	51	9	51	y	0.17	5	25	5	25	y	0.08	5	60	5	60	y	0.00	0	28	0	28	n	0.13	4	27	4	27	y	0.07	4	56	4	56	y	0.22	11	39	11	39	y	0.04	2	47	2	47	y	ENSMUSG00000020831.19	0610010K14Rik	chr11	protein_coding	RIKEN cDNA 0610010K14 gene
known_NIR_3207	chr11	70126294	70126522	-	70126290	70126522	A3SS	ENSMUST00000134700.8	known	0.56	35	27	35	27	y	0.45	27	33	27	33	y	0.49	22	23	22	23	y	0.49	20	21	20	21	y	0.46	21	25	21	25	y	0.61	14	9	14	9	y	0.53	36	32	36	32	y	0.33	8	16	8	16	y	0.46	16	19	16	19	y	0.39	21	33	21	33	y	0.49	26	27	26	27	y	0.43	20	26	20	26	y	ENSMUSG00000020831.19	0610010K14Rik	chr11	protein_coding	RIKEN cDNA 0610010K14 gene
known_NIR_3208	chr11	70126294	70126522	-	70126294	70126823	A5SS	ENSMUST00000108575.9	known	0.88	35	5	35	5	y	0.71	27	11	27	11	y	0.63	22	13	22	13	y	0.77	20	6	20	6	y	0.66	21	11	21	11	y	0.70	14	6	14	6	y	0.80	36	9	36	9	y	0.80	8	2	8	2	y	0.84	16	3	16	3	y	0.78	21	6	21	6	y	0.87	26	4	26	4	y	0.83	20	4	20	4	y	ENSMUSG00000020831.19	0610010K14Rik	chr11	protein_coding	RIKEN cDNA 0610010K14 gene
known_NIR_3209	chr11	70126294	70126850	-	70126294	70126823	A5SS	ENSMUST00000108575.9	known	0.81	22	5	22	5	y	0.76	34	11	34	11	y	0.75	38	13	38	13	y	0.82	27	6	27	6	y	0.73	30	11	30	11	y	0.77	20	6	20	6	y	0.83	43	9	43	9	y	0.88	15	2	15	2	y	0.88	21	3	21	3	y	0.83	30	6	30	6	y	0.85	22	4	22	4	y	0.90	35	4	35	4	y	ENSMUSG00000020831.19	0610010K14Rik	chr11	protein_coding	RIKEN cDNA 0610010K14 gene
known_NIR_3210	chr11	70126294	70126850	-	70126586	70126850	A3SS&ES	ENSMUST00000134700.8	known	1.00	22	0	22	0	n	0.97	34	1	34	1	n	1.00	38	0	38	0	n	1.00	27	0	27	0	n	0.97	30	1	30	1	n	1.00	20	0	20	0	n	1.00	43	0	43	0	n	1.00	15	0	15	0	n	0.91	21	2	21	2	y	1.00	30	0	30	0	n	1.00	22	0	22	0	n	1.00	35	0	35	0	n	ENSMUSG00000020831.19	0610010K14Rik	chr11	protein_coding	RIKEN cDNA 0610010K14 gene
known_NIR_3211	chr11	70126294	70126850	-	70126626	70126850	A3SS	ENSMUST00000135390.2	known	0.32	22	46	22	46	y	0.50	34	34	34	34	y	0.57	38	29	38	29	y	0.51	27	26	27	26	y	0.37	30	51	30	51	y	0.44	20	25	20	25	y	0.42	43	60	43	60	y	0.35	15	28	15	28	y	0.44	21	27	21	27	y	0.35	30	56	30	56	y	0.36	22	39	22	39	y	0.43	35	47	35	47	y	ENSMUSG00000020831.19	0610010K14Rik	chr11	protein_coding	RIKEN cDNA 0610010K14 gene
known_NIR_3212	chr11	70126294;70126586	70126522;70126850	-	70126294	70126850	cassetteExon	ENSMUST00000108579.8	known	0.44	17.5	22	35;0	22	n	0.29	14.0	34	27;1	34	n	0.22	11.0	38	22;0	38	n	0.27	10.0	27	20;0	27	n	0.27	11.0	30	21;1	30	n	0.26	7.0	20	14;0	20	n	0.30	18.0	43	36;0	43	n	0.21	4.0	15	8;0	15	n	0.30	9.0	21	16;2	21	y	0.26	10.5	30	21;0	30	n	0.37	13.0	22	26;0	22	n	0.22	10.0	35	20;0	35	n	ENSMUSG00000020831.19	0610010K14Rik	chr11	protein_coding	RIKEN cDNA 0610010K14 gene
known_NIR_3213	chr11	70126294;70126626	70126522;70126850	-	70126294	70126850	cassetteExon	ENSMUST00000108579.8	known	0.65	40.5	22	35;46	22	y	0.47	30.5	34	27;34	34	y	0.40	25.5	38	22;29	38	y	0.46	23.0	27	20;26	27	y	0.55	36.0	30	21;51	30	y	0.49	19.5	20	14;25	20	y	0.53	48.0	43	36;60	43	y	0.55	18.0	15	8;28	15	y	0.51	21.5	21	16;27	21	y	0.56	38.5	30	21;56	30	y	0.60	32.5	22	26;39	22	y	0.49	33.5	35	20;47	35	y	ENSMUSG00000020831.19	0610010K14Rik	chr11	protein_coding	RIKEN cDNA 0610010K14 gene
known_NIR_3214	chr11	70126586	70126850	-	70126626	70126850	A3SS	ENSMUST00000135390.2	known	0.00	0	46	0	46	n	0.03	1	34	1	34	n	0.00	0	29	0	29	n	0.00	0	26	0	26	n	0.02	1	51	1	51	n	0.00	0	25	0	25	n	0.00	0	60	0	60	n	0.00	0	28	0	28	n	0.07	2	27	2	27	y	0.00	0	56	0	56	n	0.00	0	39	0	39	n	0.00	0	47	0	47	n	ENSMUSG00000020831.19	0610010K14Rik	chr11	protein_coding	RIKEN cDNA 0610010K14 gene
known_NIR_3215	chr11	70127037	70127714	-	70127037	70127703	A5SS	ENSMUST00000134700.8	known	0.09	4	40	4	40	y	0.02	1	61	1	61	n	0.08	5	60	5	60	y	0.20	15	60	15	60	y	0.09	7	71	7	71	y	0.02	1	43	1	43	n	0.16	10	54	10	54	y	0.05	2	41	2	41	y	0.02	1	51	1	51	n	0.06	4	61	4	61	y	0.14	10	64	10	64	y	0.12	8	57	8	57	y	ENSMUSG00000020831.19	0610010K14Rik	chr11	protein_coding	RIKEN cDNA 0610010K14 gene
known_NIR_3216	chr11	70127037	70128357	-	70127037	70127703	5pMXE	ENSMUST00000134700.8	known	0.20	10	40	10	40	y	0.14	10	61	10	61	y	0.14	10	60	10	60	y	0.20	15	60	15	60	y	0.13	11	71	11	71	y	0.14	7	43	7	43	y	0.17	11	54	11	54	y	0.16	8	41	8	41	y	0.16	10	51	10	51	y	0.12	8	61	8	61	y	0.16	12	64	12	64	y	0.20	14	57	14	57	y	ENSMUSG00000020831.19	0610010K14Rik	chr11	protein_coding	RIKEN cDNA 0610010K14 gene
known_NIR_3217	chr11	70127037	70128357	-	70127804	70128357	3pMXE	ENSMUST00000150504.3	known	0.10	10	88	10	88	y	0.11	10	77	10	77	y	0.13	10	68	10	68	y	0.16	15	79	15	79	y	0.10	11	100	11	100	y	0.12	7	52	7	52	y	0.11	11	93	11	93	y	0.14	8	48	8	48	y	0.15	10	56	10	56	y	0.09	8	81	8	81	y	0.12	12	87	12	87	y	0.16	14	74	14	74	y	ENSMUSG00000020831.19	0610010K14Rik	chr11	protein_coding	RIKEN cDNA 0610010K14 gene
known_NIR_3218	chr11	70127037;70127804	70127703;70128357	-	70127037	70128357	cassetteExon	ENSMUST00000108575.9	known	0.86	64.0	10	40;88	10	y	0.87	69.0	10	61;77	10	y	0.86	64.0	10	60;68	10	y	0.82	69.5	15	60;79	15	y	0.89	85.5	11	71;100	11	y	0.87	47.5	7	43;52	7	y	0.87	73.5	11	54;93	11	y	0.85	44.5	8	41;48	8	y	0.84	53.5	10	51;56	10	y	0.90	71.0	8	61;81	8	y	0.86	75.5	12	64;87	12	y	0.82	65.5	14	57;74	14	y	ENSMUSG00000020831.19	0610010K14Rik	chr11	protein_coding	RIKEN cDNA 0610010K14 gene
known_NIR_3219	chr11	70127037;70127804	70127714;70128357	-	70127037	70128357	cassetteExon	ENSMUST00000108575.9	known	0.82	46.0	10	4;88	10	y	0.80	39.0	10	1;77	10	n	0.78	36.5	10	5;68	10	y	0.76	47.0	15	15;79	15	y	0.83	53.5	11	7;100	11	y	0.79	26.5	7	1;52	7	n	0.82	51.5	11	10;93	11	y	0.76	25.0	8	2;48	8	y	0.74	28.5	10	1;56	10	n	0.84	42.5	8	4;81	8	y	0.80	48.5	12	10;87	12	y	0.75	41.0	14	8;74	14	y	ENSMUSG00000020831.19	0610010K14Rik	chr11	protein_coding	RIKEN cDNA 0610010K14 gene
known_NIR_3220	chr11	70129840	70130252	-	70129840	70130482	A5SS	ENSMUST00000176268.2	known	0.00	3	673	3	673	y	0.01	4	659	4	659	y	0.01	6	903	6	903	y	0.01	8	642	8	642	y	0.01	6	749	6	749	y	0.01	4	463	4	463	y	0.00	4	886	4	886	y	0.00	2	445	2	445	y	0.00	1	569	1	569	n	0.01	8	808	8	808	y	0.01	4	652	4	652	y	0.01	9	740	9	740	y	ENSMUSG00000040904.11	Gm21988	chr11	protein_coding	predicted gene 21988
known_NIR_3221	chr11	70129840	70130252	-	70129840	70130486	A5SS	ENSMUST00000176116.8	known	0.04	3	68	3	68	y	0.05	4	75	4	75	y	0.08	6	73	6	73	y	0.11	8	67	8	67	y	0.06	6	90	6	90	y	0.07	4	51	4	51	y	0.03	4	111	4	111	y	0.03	2	63	2	63	y	0.02	1	64	1	64	n	0.07	8	100	8	100	y	0.05	4	82	4	82	y	0.10	9	83	9	83	y	ENSMUSG00000040904.11	Gm21988	chr11	protein_coding	predicted gene 21988
known_NIR_3222	chr11	70129840	70130482	-	70129840	70130486	A5SS	ENSMUST00000176116.8	known	0.91	673	68	673	68	y	0.90	659	75	659	75	y	0.93	903	73	903	73	y	0.91	642	67	642	67	y	0.89	749	90	749	90	y	0.90	463	51	463	51	y	0.89	886	111	886	111	y	0.88	445	63	445	63	y	0.90	569	64	569	64	y	0.89	808	100	808	100	y	0.89	652	82	652	82	y	0.90	740	83	740	83	y	ENSMUSG00000040904.11	Gm21988	chr11	protein_coding	predicted gene 21988
known_NIR_3223	chr11	70293579	70296453	-	70292892	70296453	A3SS	ENSMUST00000019065.10	known	0.06	1	15	1	15	n	0.08	1	11	1	11	n	0.08	2	24	2	24	y	0.14	3	19	3	19	y	0.07	2	27	2	27	y	0.10	1	9	1	9	n	0.11	2	16	2	16	y	0.00	0	15	0	15	n	0.11	2	17	2	17	y	0.13	3	20	3	20	y	0.20	2	8	2	8	y	0.05	1	20	1	20	n	ENSMUSG00000018921.12	Pelp1	chr11	protein_coding	proline, glutamic acid and leucine rich protein 1
known_NIR_3224	chr11	70323579	70326342	+	70323579	70326368	A3SS	ENSMUST00000124112.2	known	0.03	1	37	1	37	n	0.07	1	14	1	14	n	0.05	1	20	1	20	n	0.08	2	22	2	22	y	0.11	3	25	3	25	y	0.29	5	12	5	12	y	0.16	4	21	4	21	y	0.07	1	14	1	14	n	0.10	2	19	2	19	y	0.04	1	24	1	24	n	0.28	9	23	9	23	y	0.16	5	26	5	26	y	ENSMUSG00000060216.16	Arrb2	chr11	protein_coding	arrestin, beta 2
known_NIR_3225	chr11	70323579	70326989	+	70323579	70326368	3pMXE	ENSMUST00000124112.2	known	0.00	0	37	0	37	n	0.12	2	14	2	14	y	0.05	1	20	1	20	n	0.00	0	22	0	22	n	0.04	1	25	1	25	n	0.00	0	12	0	12	n	0.09	2	21	2	21	y	0.00	0	14	0	14	n	0.00	0	19	0	19	n	0.00	0	24	0	24	n	0.00	0	23	0	23	n	0.00	0	26	0	26	n	ENSMUSG00000060216.16	Arrb2	chr11	protein_coding	arrestin, beta 2
known_NIR_3226	chr11	70323579	70326989	+	70323579;70326398	70326368;70326989	ES	ENSMUST00000084954.13	known	0.00	0	39.5	0	37;42	n	0.11	2	15.5	2	14;17	y	0.04	1	22.0	1	20;24	n	0.00	0	20.5	0	22;19	n	0.04	1	26.0	1	25;27	n	0.00	0	14.0	0	12;16	n	0.11	2	17.0	2	21;13	y	0.00	0	17.0	0	14;20	n	0.00	0	19.5	0	19;20	n	0.00	0	24.5	0	24;25	n	0.00	0	26.0	0	23;29	n	0.00	0	32.0	0	26;38	n	ENSMUSG00000060216.16	Arrb2	chr11	protein_coding	arrestin, beta 2
known_NIR_3227	chr11	70323579;70326398	70326342;70326989	+	70323579	70326989	cassetteExon	ENSMUST00000150076.8	known	1.00	21.5	0	1;42	0	n	0.82	9.0	2	1;17	2	n	0.93	12.5	1	1;24	1	n	1.00	10.5	0	2;19	0	n	0.94	15.0	1	3;27	1	n	1.00	10.5	0	5;16	0	n	0.81	8.5	2	4;13	2	y	1.00	10.5	0	1;20	0	n	1.00	11.0	0	2;20	0	n	1.00	13.0	0	1;25	0	n	1.00	19.0	0	9;29	0	n	1.00	21.5	0	5;38	0	n	ENSMUSG00000060216.16	Arrb2	chr11	protein_coding	arrestin, beta 2
known_NIR_3228	chr11	70330567	70330677	+	70330567	70330644	A3SS	ENSMUST00000084954.13	known	0.94	76	5	76	5	y	0.93	63	5	63	5	y	0.90	47	5	47	5	y	0.97	35	1	35	1	n	0.87	55	8	55	8	y	0.86	25	4	25	4	y	0.82	60	13	60	13	y	0.89	33	4	33	4	y	1.00	44	0	44	0	n	0.88	59	8	59	8	y	0.90	60	7	60	7	y	0.93	51	4	51	4	y	ENSMUSG00000060216.16	Arrb2	chr11	protein_coding	arrestin, beta 2
known_NIR_3229	chr11	70348971	70349571	-	70346888	70349571	A3SS	ENSMUST00000019064.9	known	0.00	0	32	0	32	n	0.00	0	15	0	15	n	0.03	1	37	1	37	n	0.00	0	22	0	22	n	0.02	1	42	1	42	n	0.03	1	29	1	29	n	0.03	1	38	1	38	n	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.00	0	23	0	23	n	0.09	2	20	2	20	y	0.00	0	23	0	23	n	ENSMUSG00000018920.12	Cxcl16	chr11	protein_coding	chemokine (C-X-C motif) ligand 16
known_NIR_3230	chr11	70445990	70446125	+	70445990	70446158	A3SS	ENSMUST00000018429.12	known	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.10	1	9	1	9	n	0.00	0	12	0	12	n	0.20	2	8	2	8	y	0.00	0	16	0	16	n	ENSMUSG00000020828.14	Pld2	chr11	protein_coding	phospholipase D2
known_NIR_3231	chr11	70494760	70495010	+	70494769	70495010	A5SS	ENSMUST00000072237.13	known	0.03	1	36	1	36	n	0.00	0	38	0	38	n	0.06	4	59	4	59	y	0.06	4	66	4	66	y	0.01	1	82	1	82	n	0.00	0	39	0	39	n	0.08	5	59	5	59	y	0.06	3	44	3	44	y	0.00	0	45	0	45	n	0.01	1	71	1	71	n	0.05	2	40	2	40	y	0.02	1	58	1	58	n	ENSMUSG00000020827.19	Mink1	chr11	protein_coding	misshapen-like kinase 1 (zebrafish)
known_NIR_3232	chr11	70496990;70497543	70497457;70497746	+	70496990	70497746	cassetteExon	ENSMUST00000072237.13	known	0.02	1.0	45	0;2	45	n	0.03	1.0	39	0;2	39	n	0.05	2.5	49	1;4	49	n	0.00	0.0	47	0;0	47	n	0.06	4.0	60	3;5	60	y	0.02	0.5	31	0;1	31	n	0.05	2.5	48	1;4	48	n	0.07	2.5	31	2;3	31	y	0.11	4.0	33	0;8	33	n	0.03	2.0	64	0;4	64	n	0.06	2.5	39	0;5	39	n	0.00	0.0	47	0;0	47	n	ENSMUSG00000020827.19	Mink1	chr11	protein_coding	misshapen-like kinase 1 (zebrafish)
known_NIR_3233	chr11	70499252	70499666	+	70499252;70499525	70499415;70499666	ES	ENSMUST00000072237.13	known	0.13	5	33.5	5	40;27	y	0.10	3	27.5	3	25;30	y	0.15	7	40.5	7	44;37	y	0.16	7	35.5	7	36;35	y	0.02	1	54.5	1	59;50	n	0.08	2	24.0	2	22;26	y	0.08	4	47.5	4	50;45	y	0.00	0	32.5	0	34;31	n	0.04	1	27.0	1	31;23	n	0.08	5	54.0	5	52;56	y	0.03	1	29.5	1	28;31	n	0.12	5	38.0	5	35;41	y	ENSMUSG00000020827.19	Mink1	chr11	protein_coding	misshapen-like kinase 1 (zebrafish)
known_NIR_3234	chr11	70500080	70500380	+	70500080;70500257	70500234;70500380	ES	ENSMUST00000072237.13	known	0.42	29	40.5	29	42;39	y	0.39	18	28.5	18	30;27	y	0.50	31	30.5	31	26;35	y	0.44	30	38.5	30	39;38	y	0.48	48	51.5	48	49;54	y	0.67	31	15.0	31	14;16	y	0.39	28	43.0	28	41;45	y	0.54	27	23.0	27	17;29	y	0.38	17	28.0	17	27;29	y	0.47	31	35.0	31	33;37	y	0.38	19	30.5	19	33;28	y	0.35	27	51.0	27	48;54	y	ENSMUSG00000020827.19	Mink1	chr11	protein_coding	misshapen-like kinase 1 (zebrafish)
known_NIR_3235	chr11	70500543	70500904	+	70500543	70500907	A3SS	ENSMUST00000072237.13	known	1.00	42	0	42	0	n	0.87	33	5	33	5	y	0.90	52	6	52	6	y	0.93	57	4	57	4	y	0.86	72	12	72	12	y	1.00	45	0	45	0	n	0.88	51	7	51	7	y	0.91	39	4	39	4	y	0.94	29	2	29	2	y	0.87	69	10	69	10	y	0.91	31	3	31	3	y	0.93	52	4	52	4	y	ENSMUSG00000020827.19	Mink1	chr11	protein_coding	misshapen-like kinase 1 (zebrafish)
known_NIR_3236	chr11	70537054	70538117	-	70537054	70537594	5pMXE	ENSMUST00000014750.15	known	0.02	3	138	3	138	y	0.05	6	112	6	112	y	0.05	8	146	8	146	y	0.01	2	160	2	160	y	0.04	6	162	6	162	y	0.06	5	85	5	85	y	0.02	5	214	5	214	y	0.08	9	108	9	108	y	0.04	5	131	5	131	y	0.04	8	184	8	184	y	0.03	4	128	4	128	y	0.01	2	151	2	151	y	ENSMUSG00000014606.15	Slc25a11	chr11	protein_coding	solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11
known_NIR_3237	chr11	70537109	70537594	-	70537054	70537594	A3SS	ENSMUST00000014750.15	known	0.00	0	138	0	138	n	0.00	0	112	0	112	n	0.03	4	146	4	146	y	0.00	0	160	0	160	n	0.02	3	162	3	162	y	0.00	0	85	0	85	n	0.00	0	214	0	214	n	0.05	6	108	6	108	y	0.01	1	131	1	131	n	0.00	0	184	0	184	n	0.02	3	128	3	128	y	0.00	0	151	0	151	n	ENSMUSG00000014606.15	Slc25a11	chr11	protein_coding	solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11
known_NIR_3238	chr11	70538778	70538855	+	70538778	70538841	A3SS	ENSMUST00000141537.2	known	0.99	79	1	79	1	n	1.00	104	0	104	0	n	0.95	61	3	61	3	y	0.98	125	2	125	2	y	0.99	112	1	112	1	n	0.98	52	1	52	1	n	0.98	98	2	98	2	y	0.94	46	3	46	3	y	0.98	87	2	87	2	y	0.98	140	3	140	3	y	0.97	107	3	107	3	y	0.96	102	4	102	4	y	ENSMUSG00000040746.16	Rnf167	chr11	protein_coding	ring finger protein 167
known_NIR_3239	chr11	70538935	70540047	+	70538935;70539418	70539234;70540047	ES	ENSMUST00000141695.8	known	1.00	59	0.0	59	0;0	n	0.98	76	1.5	76	0;3	n	1.00	48	0.0	48	0;0	n	0.97	78	2.5	78	0;5	n	0.97	92	3.0	92	1;5	n	0.95	30	1.5	30	0;3	n	0.95	82	4.5	82	2;7	y	1.00	38	0.0	38	0;0	n	0.95	69	3.5	69	4;3	y	0.96	116	5.0	116	3;7	y	0.98	89	1.5	89	2;1	n	0.99	94	0.5	94	0;1	n	ENSMUSG00000040746.16	Rnf167	chr11	protein_coding	ring finger protein 167
known_NIR_3240	chr11	70540172	70540271	+	70540120	70540271	A5SS	ENSMUST00000141695.8	known	0.94	89	6	89	6	y	0.97	110	3	110	3	y	0.95	84	4	84	4	y	0.95	133	7	133	7	y	0.99	126	1	126	1	n	1.00	42	0	42	0	n	0.99	101	1	101	1	n	0.95	58	3	58	3	y	0.94	98	6	98	6	y	0.94	148	9	148	9	y	0.95	117	6	117	6	y	0.95	124	7	124	7	y	ENSMUSG00000040746.16	Rnf167	chr11	protein_coding	ring finger protein 167
known_NIR_3241	chr11	70543780	70545175	-	70543805	70545175	A3SS	ENSMUST00000018437.3	known	0.00	3	1305	3	1305	y	0.01	7	1380	7	1380	y	0.01	15	1551	15	1551	y	0.01	8	1280	8	1280	y	0.01	16	1580	16	1580	y	0.00	0	847	0	847	n	0.01	11	1493	11	1493	y	0.01	9	848	9	848	y	0.00	0	960	0	960	n	0.01	9	1384	9	1384	y	0.01	7	1326	7	1326	y	0.01	12	1331	12	1331	y	ENSMUSG00000018293.5	Pfn1	chr11	protein_coding	profilin 1
known_NIR_3242	chr11	70548093	70548586	+	70548093	70548698	A3SS	ENSMUST00000072841.12	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.16	7	36	7	36	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000060600.16	Eno3	chr11	protein_coding	enolase 3, beta muscle
known_NIR_3243	chr11	70548093	70548698	+	70548105	70548698	A5SS	ENSMUST00000157027.8	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.92	36	3	36	3	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000060600.16	Eno3	chr11	protein_coding	enolase 3, beta muscle
known_NIR_3244	chr11	70573873	70574716	-	70573873	70574105	5pMXE	ENSMUST00000125687.2	known	0.04	2	53	2	53	y	0.06	2	31	2	31	y	0.06	5	76	5	76	y	0.10	6	55	6	55	y	0.02	2	82	2	82	y	0.02	1	61	1	61	n	0.08	5	56	5	56	y	0.09	5	53	5	53	y	0.07	3	38	3	38	y	0.08	5	61	5	61	y	0.07	3	37	3	37	y	0.04	2	52	2	52	y	ENSMUSG00000040712.17	Camta2	chr11	protein_coding	calmodulin binding transcription activator 2
known_NIR_3245	chr11	70573873	70574716	-	70573873;70574243	70574105;70574716	ES	ENSMUST00000145823.8	known	0.07	2	26.5	2	53;0	n	0.11	2	15.5	2	31;0	n	0.11	5	39.5	5	76;3	y	0.18	6	28.0	6	55;1	n	0.04	2	43.0	2	82;4	y	0.03	1	30.5	1	61;0	n	0.15	5	29.0	5	56;2	y	0.15	5	27.5	5	53;2	y	0.13	3	20.5	3	38;3	y	0.14	5	32.0	5	61;3	y	0.14	3	18.5	3	37;0	n	0.07	2	27.0	2	52;2	y	ENSMUSG00000040712.17	Camta2	chr11	protein_coding	calmodulin binding transcription activator 2
known_NIR_3246	chr11	70573873;70574176	70574105;70574716	-	70573873	70574716	cassetteExon	ENSMUST00000108545.9	known	0.95	42.0	2	53;31	2	y	0.92	24.0	2	31;17	2	y	0.92	61.0	5	76;46	5	y	0.87	41.0	6	55;27	6	y	0.97	65.0	2	82;48	2	y	0.98	47.5	1	61;34	1	n	0.90	45.5	5	56;35	5	y	0.90	43.0	5	53;33	5	y	0.90	27.5	3	38;17	3	y	0.90	45.5	5	61;30	5	y	0.91	29.0	3	37;21	3	y	0.95	39.5	2	52;27	2	y	ENSMUSG00000040712.17	Camta2	chr11	protein_coding	calmodulin binding transcription activator 2
known_NIR_3247	chr11	70573873;70574191	70574105;70574716	-	70573873	70574716	cassetteExon	ENSMUST00000108545.9	known	0.93	28.0	2	53;3	2	y	0.89	15.5	2	31;0	2	n	0.89	38.5	5	76;1	5	n	0.83	28.5	6	55;2	6	y	0.96	43.0	2	82;4	2	y	0.97	32.0	1	61;3	1	n	0.85	29.0	5	56;2	5	y	0.85	27.5	5	53;2	5	y	0.87	20.0	3	38;2	3	y	0.86	31.5	5	61;2	5	y	0.86	19.0	3	37;1	3	n	0.93	26.5	2	52;1	2	n	ENSMUSG00000040712.17	Camta2	chr11	protein_coding	calmodulin binding transcription activator 2
known_NIR_3248	chr11	70574176	70574716	-	70574191	70574716	A3SS	ENSMUST00000036299.14	known	0.91	31	3	31	3	y	1.00	17	0	17	0	n	0.98	46	1	46	1	n	0.93	27	2	27	2	y	0.92	48	4	48	4	y	0.92	34	3	34	3	y	0.95	35	2	35	2	y	0.94	33	2	33	2	y	0.89	17	2	17	2	y	0.94	30	2	30	2	y	0.95	21	1	21	1	n	0.96	27	1	27	1	n	ENSMUSG00000040712.17	Camta2	chr11	protein_coding	calmodulin binding transcription activator 2
known_NIR_3249	chr11	70574176	70574716	-	70574243	70574716	A3SS	ENSMUST00000145823.8	known	1.00	31	0	31	0	n	1.00	17	0	17	0	n	0.94	46	3	46	3	y	0.96	27	1	27	1	n	0.92	48	4	48	4	y	1.00	34	0	34	0	n	0.95	35	2	35	2	y	0.94	33	2	33	2	y	0.85	17	3	17	3	y	0.91	30	3	30	3	y	1.00	21	0	21	0	n	0.93	27	2	27	2	y	ENSMUSG00000040712.17	Camta2	chr11	protein_coding	calmodulin binding transcription activator 2
known_NIR_3250	chr11	70581378;70585038	70584975;70586690	-	70581378	70586690	cassetteExon	ENSMUST00000108542.8	known	0.04	2.0	46	1;3	46	n	0.04	2.0	47	3;1	47	n	0.02	2.0	99	2;2	99	y	0.02	1.0	48	2;0	48	n	0.03	3.0	109	3;3	109	y	0.02	1.0	53	2;0	53	n	0.08	8.0	95	7;9	95	y	0.03	2.0	57	2;2	57	y	0.01	0.5	54	0;1	54	n	0.03	3.0	87	2;4	87	y	0.04	2.0	52	2;2	52	y	0.01	0.5	44	1;0	44	n	ENSMUSG00000057054.12	Inca1	chr11	protein_coding	inhibitor of CDK, cyclin A1 interacting protein 1
known_NIR_3251	chr11	70586774	70590746	-	70586774	70590814	A5SS	ENSMUST00000108541.9	known	0.09	1	10	1	10	n	0.08	1	11	1	11	n	0.04	1	26	1	26	n	0.12	2	15	2	15	y	0.12	4	30	4	30	y	0.19	3	13	3	13	y	0.00	0	23	0	23	n	0.35	6	11	6	11	y	0.08	2	23	2	23	y	0.18	6	27	6	27	y	0.00	0	21	0	21	n	0.15	2	11	2	11	y	ENSMUSG00000057054.12	Inca1	chr11	protein_coding	inhibitor of CDK, cyclin A1 interacting protein 1
known_NIR_3252	chr11	70586774	70590746	-	70586774	70590884	A5SS	ENSMUST00000108542.8	known	0.08	1	12	1	12	n	0.08	1	12	1	12	n	0.04	1	24	1	24	n	0.10	2	18	2	18	y	0.12	4	30	4	30	y	0.14	3	19	3	19	y	0.00	0	22	0	22	n	0.16	6	31	6	31	y	0.08	2	24	2	24	y	0.21	6	23	6	23	y	0.00	0	12	0	12	n	0.20	2	8	2	8	y	ENSMUSG00000057054.12	Inca1	chr11	protein_coding	inhibitor of CDK, cyclin A1 interacting protein 1
known_NIR_3253	chr11	70586774	70590775	-	70586774	70590814	A5SS	ENSMUST00000108541.9	known	0.17	2	10	2	10	y	0.00	0	11	0	11	n	0.07	2	26	2	26	y	0.00	0	15	0	15	n	0.00	0	30	0	30	n	0.00	0	13	0	13	n	0.04	1	23	1	23	n	0.00	0	11	0	11	n	0.08	2	23	2	23	y	0.00	0	27	0	27	n	0.19	5	21	5	21	y	0.21	3	11	3	11	y	ENSMUSG00000057054.12	Inca1	chr11	protein_coding	inhibitor of CDK, cyclin A1 interacting protein 1
known_NIR_3254	chr11	70586774	70590775	-	70586774	70590884	A5SS	ENSMUST00000108542.8	known	0.14	2	12	2	12	y	0.00	0	12	0	12	n	0.08	2	24	2	24	y	0.00	0	18	0	18	n	0.00	0	30	0	30	n	0.00	0	19	0	19	n	0.04	1	22	1	22	n	0.00	0	31	0	31	n	0.08	2	24	2	24	y	0.00	0	23	0	23	n	0.29	5	12	5	12	y	0.27	3	8	3	8	y	ENSMUSG00000057054.12	Inca1	chr11	protein_coding	inhibitor of CDK, cyclin A1 interacting protein 1
known_NIR_3255	chr11	70586774	70590814	-	70586774	70590884	A5SS	ENSMUST00000108542.8	known	0.45	10	12	10	12	y	0.48	11	12	11	12	y	0.52	26	24	26	24	y	0.45	15	18	15	18	y	0.50	30	30	30	30	y	0.41	13	19	13	19	y	0.51	23	22	23	22	y	0.26	11	31	11	31	y	0.49	23	24	23	24	y	0.54	27	23	27	23	y	0.64	21	12	21	12	y	0.58	11	8	11	8	y	ENSMUSG00000057054.12	Inca1	chr11	protein_coding	inhibitor of CDK, cyclin A1 interacting protein 1
known_NIR_3256	chr11	70586869	70590814	-	70586774	70590814	A3SS	ENSMUST00000108541.9	known	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.07	2	26	2	26	y	0.17	3	15	3	15	y	0.03	1	30	1	30	n	0.24	4	13	4	13	y	0.08	2	23	2	23	y	0.00	0	11	0	11	n	0.00	0	23	0	23	n	0.07	2	27	2	27	y	0.09	2	21	2	21	y	0.00	0	11	0	11	n	ENSMUSG00000057054.12	Inca1	chr11	protein_coding	inhibitor of CDK, cyclin A1 interacting protein 1
known_NIR_3257	chr11	70591535	70593198	+	70591535	70593272	A3SS	ENSMUST00000152618.9	known	0.71	42	17	42	17	y	0.69	42	19	42	19	y	0.92	104	9	104	9	y	0.77	85	26	85	26	y	0.83	151	30	151	30	y	0.85	60	11	60	11	y	0.82	120	27	120	27	y	0.80	78	19	78	19	y	0.78	46	13	46	13	y	0.77	104	31	104	31	y	0.91	61	6	61	6	y	0.73	67	25	67	25	y	ENSMUSG00000020821.18	Kif1c	chr11	protein_coding	kinesin family member 1C
known_NIR_3258	chr11	70591535	70593258	+	70591535	70593198	A3SS	ENSMUST00000094499.11	known	0.16	8	42	8	42	y	0.18	9	42	9	42	y	0.11	13	104	13	104	y	0.20	21	85	21	85	y	0.13	23	151	23	151	y	0.12	8	60	8	60	y	0.12	17	120	17	120	y	0.18	17	78	17	78	y	0.22	13	46	13	46	y	0.14	17	104	17	104	y	0.16	12	61	12	61	y	0.15	12	67	12	67	y	ENSMUSG00000020821.18	Kif1c	chr11	protein_coding	kinesin family member 1C
known_NIR_3259	chr11	70591535	70593258	+	70591535	70593272	A3SS	ENSMUST00000152618.9	known	0.32	8	17	8	17	y	0.32	9	19	9	19	y	0.59	13	9	13	9	y	0.45	21	26	21	26	y	0.43	23	30	23	30	y	0.42	8	11	8	11	y	0.39	17	27	17	27	y	0.47	17	19	17	19	y	0.50	13	13	13	13	y	0.35	17	31	17	31	y	0.67	12	6	12	6	y	0.32	12	25	12	25	y	ENSMUSG00000020821.18	Kif1c	chr11	protein_coding	kinesin family member 1C
known_NIR_3260	chr11	70591535	70593598	+	70591535;70593377	70593198;70593598	ES	ENSMUST00000094499.11	known	0.27	28	74.5	28	42;107	y	0.27	21	56.0	21	42;70	y	0.21	36	136.0	36	104;168	y	0.29	45	108.5	45	85;132	y	0.26	64	186.5	64	151;222	y	0.22	25	89.5	25	60;119	y	0.23	43	140.0	43	120;160	y	0.33	49	100.0	49	78;122	y	0.24	21	65.0	21	46;84	y	0.24	43	136.0	43	104;168	y	0.23	25	84.5	25	61;108	y	0.21	30	112.5	30	67;158	y	ENSMUSG00000020821.18	Kif1c	chr11	protein_coding	kinesin family member 1C
known_NIR_3261	chr11	70591535	70593598	+	70591535;70593377	70593272;70593598	ES	ENSMUST00000152618.9	known	0.31	28	62.0	28	17;107	y	0.32	21	44.5	21	19;70	y	0.29	36	88.5	36	9;168	y	0.36	45	79.0	45	26;132	y	0.34	64	126.0	64	30;222	y	0.28	25	65.0	25	11;119	y	0.32	43	93.5	43	27;160	y	0.41	49	70.5	49	19;122	y	0.30	21	48.5	21	13;84	y	0.30	43	99.5	43	31;168	y	0.30	25	57.0	25	6;108	y	0.25	30	91.5	30	25;158	y	ENSMUSG00000020821.18	Kif1c	chr11	protein_coding	kinesin family member 1C
known_NIR_3262	chr11	70591535;70593377	70593258;70593598	+	70591535	70593598	cassetteExon	ENSMUST00000072187.12	known	0.67	57.5	28	8;107	28	y	0.65	39.5	21	9;70	21	y	0.72	90.5	36	13;168	36	y	0.63	76.5	45	21;132	45	y	0.66	122.5	64	23;222	64	y	0.72	63.5	25	8;119	25	y	0.67	88.5	43	17;160	43	y	0.59	69.5	49	17;122	49	y	0.70	48.5	21	13;84	21	y	0.68	92.5	43	17;168	43	y	0.71	60.0	25	12;108	25	y	0.74	85.0	30	12;158	30	y	ENSMUSG00000020821.18	Kif1c	chr11	protein_coding	kinesin family member 1C
known_NIR_3263	chr11	70616038	70616714	+	70616002	70616714	A5SS	ENSMUST00000102554.8	known	0.01	2	264	2	264	y	0.01	3	226	3	226	y	0.00	0	290	0	290	n	0.02	5	283	5	283	y	0.01	4	421	4	421	y	0.01	2	173	2	173	y	0.02	8	400	8	400	y	0.01	3	202	3	202	y	0.01	1	191	1	191	n	0.03	12	331	12	331	y	0.02	5	290	5	290	y	0.01	4	322	4	322	y	ENSMUSG00000020821.18	Kif1c	chr11	protein_coding	kinesin family member 1C
known_NIR_3264	chr11	70735834	70775591	+	70735834;70765700	70765572;70775591	ES	ENSMUST00000076270.13	known	0.00	0	23.5	0	13;34	n	0.00	0	11.5	0	6;17	n	0.00	0	37.5	0	30;45	n	0.09	3	29.0	3	23;35	y	0.11	5	40.5	5	39;42	y	0.00	0	15.0	0	4;26	n	0.00	0	47.0	0	42;52	n	0.11	3	24.5	3	23;26	y	0.00	0	25.5	0	20;31	n	0.03	1	37.0	1	32;42	n	0.05	1	19.0	1	18;20	n	0.00	0	37.5	0	32;43	n	ENSMUSG00000020817.17	Rabep1	chr11	protein_coding	rabaptin, RAB GTPase binding effector protein 1
known_NIR_3265	chr11	70808608	70811678	+	70808608;70810107	70810003;70811678	ES	ENSMUST00000076270.13	known	0.00	0	23.5	0	25;22	n	0.07	2	28.5	2	28;29	y	0.02	1	55.5	1	52;59	n	0.12	5	37.0	5	39;35	y	0.03	2	62.0	2	63;61	y	0.09	3	30.0	3	21;39	y	0.12	7	49.5	7	42;57	y	0.00	0	41.0	0	43;39	n	0.17	7	34.0	7	32;36	y	0.11	7	54.5	7	61;48	y	0.12	5	35.0	5	29;41	y	0.05	3	53.5	3	50;57	y	ENSMUSG00000020817.17	Rabep1	chr11	protein_coding	rabaptin, RAB GTPase binding effector protein 1
known_NIR_3266	chr11	70834148	70834938	-	70834148	70834705	A5SS	ENSMUST00000148168.8	known	0.00	0	107	0	107	n	0.01	1	125	1	125	n	0.00	0	100	0	100	n	0.00	0	78	0	78	n	0.00	0	118	0	118	n	0.00	0	62	0	62	n	0.02	2	112	2	112	y	0.03	2	57	2	57	y	0.00	0	97	0	97	n	0.00	0	112	0	112	n	0.00	0	117	0	117	n	0.00	0	124	0	124	n	ENSMUSG00000040667.12	Nup88	chr11	protein_coding	nucleoporin 88
known_NIR_3267	chr11	70834148	70834938	-	70834148;70834823	70834705;70834938	ES	ENSMUST00000108531.8	known	0.00	0	92.0	0	107;77	n	0.01	1	104.0	1	125;83	n	0.00	0	94.5	0	100;89	n	0.00	0	67.0	0	78;56	n	0.00	0	96.5	0	118;75	n	0.00	0	54.0	0	62;46	n	0.02	2	99.5	2	112;87	y	0.03	2	56.0	2	57;55	y	0.00	0	79.5	0	97;62	n	0.00	0	98.0	0	112;84	n	0.00	0	102.5	0	117;88	n	0.00	0	97.0	0	124;70	n	ENSMUSG00000040667.12	Nup88	chr11	protein_coding	nucleoporin 88
known_NIR_3268	chr11	70834148	70834938	-	70834823	70834938	3pMXE	ENSMUST00000141179.8	known	0.00	0	77	0	77	n	0.01	1	83	1	83	n	0.00	0	89	0	89	n	0.00	0	56	0	56	n	0.00	0	75	0	75	n	0.00	0	46	0	46	n	0.02	2	87	2	87	y	0.04	2	55	2	55	y	0.00	0	62	0	62	n	0.00	0	84	0	84	n	0.00	0	88	0	88	n	0.00	0	70	0	70	n	ENSMUSG00000040667.12	Nup88	chr11	protein_coding	nucleoporin 88
known_NIR_3269	chr11	70835406	70835499	-	70835388	70835499	A3SS	ENSMUST00000108531.8	known	0.00	0	69	0	69	n	0.00	0	67	0	67	n	0.00	0	75	0	75	n	0.00	0	74	0	74	n	0.00	0	93	0	93	n	0.00	0	37	0	37	n	0.00	0	74	0	74	n	0.00	0	52	0	52	n	0.01	1	71	1	71	n	0.00	0	82	0	82	n	0.00	0	78	0	78	n	0.04	2	51	2	51	y	ENSMUSG00000040667.12	Nup88	chr11	protein_coding	nucleoporin 88
known_NIR_3270	chr11	70835796	70836029	-	70835811	70836029	A3SS	ENSMUST00000108531.8	known	0.74	46	16	46	16	y	0.78	28	8	28	8	y	0.71	65	26	65	26	y	0.70	30	13	30	13	y	0.75	51	17	51	17	y	0.68	21	10	21	10	y	0.67	34	17	34	17	y	0.75	21	7	21	7	y	0.64	27	15	27	15	y	0.73	52	19	52	19	y	0.67	31	15	31	15	y	0.80	51	13	51	13	y	ENSMUSG00000040667.12	Nup88	chr11	protein_coding	nucleoporin 88
known_NIR_3271	chr11	70838625	70840972	-	70838629	70840972	A3SS	ENSMUST00000148168.8	known	0.07	3	42	3	42	y	0.12	5	36	5	36	y	0.00	0	73	0	73	n	0.00	0	53	0	53	n	0.00	0	61	0	61	n	0.00	0	46	0	46	n	0.00	0	75	0	75	n	0.11	3	25	3	25	y	0.00	0	38	0	38	n	0.00	0	60	0	60	n	0.00	0	66	0	66	n	0.00	0	64	0	64	n	ENSMUSG00000040667.12	Nup88	chr11	protein_coding	nucleoporin 88
known_NIR_3272	chr11	70862760	70868484	+	70862760	70863841	3pMXE	ENSMUST00000129531.8	known	0.01	1	151	1	151	n	0.00	0	133	0	133	n	0.02	3	118	3	118	y	0.00	0	141	0	141	n	0.00	0	179	0	179	n	0.00	0	61	0	61	n	0.01	2	173	2	173	y	0.00	0	40	0	40	n	0.00	0	104	0	104	n	0.00	0	149	0	149	n	0.02	2	122	2	122	y	0.00	0	165	0	165	n	ENSMUSG00000018449.13	Rpain	chr11	protein_coding	RPA interacting protein
known_NIR_3273	chr11	70862760;70863901	70863841;70868484	+	70862760	70868484	cassetteExon	ENSMUST00000108529.10	known	0.99	78.0	1	151;5	1	n	1.00	71.5	0	133;10	0	n	0.95	61.5	3	118;5	3	y	1.00	71.5	0	141;2	0	n	1.00	91.5	0	179;4	0	n	1.00	31.0	0	61;1	0	n	0.98	88.0	2	173;3	2	y	1.00	20.5	0	40;1	0	n	1.00	52.5	0	104;1	0	n	1.00	76.0	0	149;3	0	n	0.97	62.0	2	122;2	2	y	1.00	86.5	0	165;8	0	n	ENSMUSG00000018449.13	Rpain	chr11	protein_coding	RPA interacting protein
known_NIR_3274	chr11	70863901	70864895	+	70863901;70864739	70864628;70864895	ES	ENSMUST00000018593.10	known	0.11	13	106.0	13	110;102	y	0.03	4	118.0	4	125;111	y	0.06	6	88.0	6	97;79	y	0.10	10	94.5	10	101;88	y	0.07	9	119.5	9	134;105	y	0.02	1	45.5	1	51;40	n	0.10	15	135.0	15	163;107	y	0.02	1	43.5	1	52;35	n	0.08	7	86.0	7	105;67	y	0.05	7	126.5	7	143;110	y	0.07	7	95.0	7	102;88	y	0.11	14	109.0	14	121;97	y	ENSMUSG00000018449.13	Rpain	chr11	protein_coding	RPA interacting protein
known_NIR_3275	chr11	70863901	70868484	+	70863901	70864895	3pMXE	ENSMUST00000126815.8	known	0.28	5	13	5	13	y	0.71	10	4	10	4	y	0.45	5	6	5	6	y	0.17	2	10	2	10	y	0.31	4	9	4	9	y	0.50	1	1	1	1	n	0.17	3	15	3	15	y	0.50	1	1	1	1	n	0.12	1	7	1	7	n	0.30	3	7	3	7	y	0.22	2	7	2	7	n	0.36	8	14	8	14	y	ENSMUSG00000018449.13	Rpain	chr11	protein_coding	RPA interacting protein
known_NIR_3276	chr11	70863901;70864958	70864628;70868484	+	70863901	70868484	cassetteExon	ENSMUST00000169965.8	known	0.92	55.5	5	110;1	5	n	0.87	65.0	10	125;5	10	y	0.91	48.5	5	97;0	5	n	0.96	51.0	2	101;1	2	n	0.94	67.5	4	134;1	4	n	0.96	26.0	1	51;1	1	n	0.97	84.0	3	163;5	3	y	0.96	26.5	1	52;1	1	n	0.98	52.5	1	105;0	1	n	0.96	72.5	3	143;2	3	y	0.96	52.0	2	102;2	2	y	0.88	60.5	8	121;0	8	n	ENSMUSG00000018449.13	Rpain	chr11	protein_coding	RPA interacting protein
known_NIR_3277	chr11	70863901;70864958	70864895;70868484	+	70863901	70868484	cassetteExon	ENSMUST00000169965.8	known	0.58	7.0	5	13;1	5	n	0.31	4.5	10	4;5	10	y	0.38	3.0	5	6;0	5	n	0.73	5.5	2	10;1	2	n	0.56	5.0	4	9;1	4	n	0.50	1.0	1	1;1	1	n	0.77	10.0	3	15;5	3	y	0.50	1.0	1	1;1	1	n	0.78	3.5	1	7;0	1	n	0.60	4.5	3	7;2	3	y	0.69	4.5	2	7;2	2	y	0.47	7.0	8	14;0	8	n	ENSMUSG00000018449.13	Rpain	chr11	protein_coding	RPA interacting protein
known_NIR_3278	chr11	70864958	70865820	+	70864958	70865726	A3SS	ENSMUST00000018593.10	known	0.00	0	109	0	109	n	0.01	1	138	1	138	n	0.01	1	102	1	102	n	0.02	2	99	2	99	y	0.01	1	121	1	121	n	0.00	0	34	0	34	n	0.00	0	162	0	162	n	0.00	0	46	0	46	n	0.01	1	76	1	76	n	0.02	4	157	4	157	y	0.00	0	88	0	88	n	0.00	0	127	0	127	n	ENSMUSG00000018449.13	Rpain	chr11	protein_coding	RPA interacting protein
known_NIR_3279	chr11	70864958	70868484	+	70864958;70865866	70865726;70868484	ES	ENSMUST00000018593.10	known	0.01	1	115.5	1	109;122	n	0.04	5	137.0	5	138;136	y	0.00	0	103.0	0	102;104	n	0.01	1	99.0	1	99;99	n	0.01	1	127.0	1	121;133	n	0.02	1	43.5	1	34;53	n	0.03	5	162.5	5	162;163	y	0.02	1	54.0	1	46;62	n	0.00	0	79.5	0	76;83	n	0.01	2	160.0	2	157;163	y	0.02	2	97.0	2	88;106	y	0.00	0	118.0	0	127;109	n	ENSMUSG00000018449.13	Rpain	chr11	protein_coding	RPA interacting protein
known_NIR_3280	chr11	70864958	70868484	+	70864958;70865866	70865820;70868484	ES	ENSMUST00000178822.8	known	0.02	1	61.0	1	0;122	n	0.07	5	68.5	5	1;136	n	0.00	0	52.5	0	1;104	n	0.02	1	50.5	1	2;99	n	0.01	1	67.0	1	1;133	n	0.04	1	26.5	1	0;53	n	0.06	5	81.5	5	0;163	n	0.03	1	31.0	1	0;62	n	0.00	0	42.0	0	1;83	n	0.02	2	83.5	2	4;163	y	0.04	2	53.0	2	0;106	n	0.00	0	54.5	0	0;109	n	ENSMUSG00000018449.13	Rpain	chr11	protein_coding	RPA interacting protein
known_NIR_3281	chr11	70864958	70868484	+	70865866	70868484	5pMXE	ENSMUST00000129540.2	known	0.01	1	122	1	122	n	0.04	5	136	5	136	y	0.00	0	104	0	104	n	0.01	1	99	1	99	n	0.01	1	133	1	133	n	0.02	1	53	1	53	n	0.03	5	163	5	163	y	0.02	1	62	1	62	n	0.00	0	83	0	83	n	0.01	2	163	2	163	y	0.02	2	106	2	106	y	0.00	0	109	0	109	n	ENSMUSG00000018449.13	Rpain	chr11	protein_coding	RPA interacting protein
known_NIR_3282	chr11	70865866	70868484	+	70862760	70868484	A5SS	ENSMUST00000108529.10	known	0.99	122	1	122	1	n	1.00	136	0	136	0	n	0.97	104	3	104	3	y	1.00	99	0	99	0	n	1.00	133	0	133	0	n	1.00	53	0	53	0	n	0.99	163	2	163	2	y	1.00	62	0	62	0	n	1.00	83	0	83	0	n	1.00	163	0	163	0	n	0.98	106	2	106	2	y	1.00	109	0	109	0	n	ENSMUSG00000018449.13	Rpain	chr11	protein_coding	RPA interacting protein
known_NIR_3283	chr11	70865866	70868484	+	70863901	70868484	A5SS	ENSMUST00000169965.8	known	0.96	122	5	122	5	y	0.93	136	10	136	10	y	0.95	104	5	104	5	y	0.98	99	2	99	2	y	0.97	133	4	133	4	y	0.98	53	1	53	1	n	0.98	163	3	163	3	y	0.98	62	1	62	1	n	0.99	83	1	83	1	n	0.98	163	3	163	3	y	0.98	106	2	106	2	y	0.93	109	8	109	8	y	ENSMUSG00000018449.13	Rpain	chr11	protein_coding	RPA interacting protein
known_NIR_3284	chr11	70883137	70884436	-	70883137;70883612	70883485;70884436	ES	ENSMUST00000108527.8	known	0.00	0	20.0	0	26;14	n	0.00	0	15.0	0	18;12	n	0.00	0	39.5	0	40;39	n	0.00	0	26.0	0	25;27	n	0.00	0	26.0	0	31;21	n	0.00	0	18.0	0	20;16	n	0.00	0	25.0	0	20;30	n	0.00	0	16.5	0	18;15	n	0.00	0	15.0	0	14;16	n	0.00	0	34.5	0	42;27	n	0.00	0	21.5	0	17;26	n	0.12	3	22.5	3	28;17	y	ENSMUSG00000040620.16	Dhx33	chr11	protein_coding	DEAH (Asp-Glu-Ala-His) box polypeptide 33
known_NIR_3285	chr11	70884842	70886714	-	70884842;70886076	70885965;70886714	ES	ENSMUST00000108527.8	known	0.09	1	10.0	1	6;14	n	0.00	0	9.0	0	14;4	n	0.00	0	27.0	0	27;27	n	0.00	0	7.0	0	7;7	n	0.08	2	24.5	2	15;34	y	0.00	0	12.5	0	12;13	n	0.00	0	19.0	0	16;22	n	0.00	0	9.5	0	8;11	n	0.00	0	12.0	0	9;15	n	0.05	1	17.5	1	19;16	n	0.00	0	13.0	0	16;10	n	0.00	0	12.5	0	19;6	n	ENSMUSG00000040620.16	Dhx33	chr11	protein_coding	DEAH (Asp-Glu-Ala-His) box polypeptide 33
known_NIR_3286	chr11	70884842	70886714	-	70886076	70886714	3pMXE	ENSMUST00000123860.2	known	0.07	1	14	1	14	n	0.00	0	4	0	4	n	0.00	0	27	0	27	n	0.00	0	7	0	7	n	0.06	2	34	2	34	y	0.00	0	13	0	13	n	0.00	0	22	0	22	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.06	1	16	1	16	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	ENSMUSG00000040620.16	Dhx33	chr11	protein_coding	DEAH (Asp-Glu-Ala-His) box polypeptide 33
known_NIR_3287	chr11	70890774	70891701	-	70890774	70892345	A5SS	ENSMUST00000108527.8	known	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.00	0	25	0	25	n	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.00	0	15	0	15	n	0.14	3	18	3	18	y	0.00	0	16	0	16	n	0.00	0	16	0	16	n	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.00	0	14	0	14	n	ENSMUSG00000040620.16	Dhx33	chr11	protein_coding	DEAH (Asp-Glu-Ala-His) box polypeptide 33
known_NIR_3288	chr11	70904464	70906553	-	70904464;70905469	70905376;70906553	ES	ENSMUST00000108523.10	known	0.00	0	282.5	0	286;279	n	0.00	0	256.0	0	270;242	n	0.00	1	422.5	1	435;410	n	0.01	2	325.5	2	344;307	y	0.01	4	446.0	4	489;403	y	0.00	0	271.0	0	310;232	n	0.00	1	385.5	1	400;371	n	0.00	1	291.5	1	297;286	n	0.01	2	263.5	2	258;269	y	0.01	2	371.0	2	407;335	y	0.01	2	309.5	2	331;288	y	0.01	5	370.0	5	391;349	y	ENSMUSG00000018442.14	Derl2	chr11	protein_coding	Der1-like domain family, member 2
known_NIR_3289	chr11	70904464	70906553	-	70905469	70906553	3pMXE	ENSMUST00000131340.2	known	0.00	0	279	0	279	n	0.00	0	242	0	242	n	0.00	1	410	1	410	n	0.01	2	307	2	307	y	0.01	4	403	4	403	y	0.00	0	232	0	232	n	0.00	1	371	1	371	n	0.00	1	286	1	286	n	0.01	2	269	2	269	y	0.01	2	335	2	335	y	0.01	2	288	2	288	y	0.01	5	349	5	349	y	ENSMUSG00000018442.14	Derl2	chr11	protein_coding	Der1-like domain family, member 2
known_NIR_3290	chr11	70909203	70909935	-	70909203	70909970	A5SS	ENSMUST00000108523.10	known	0.02	4	168	4	168	y	0.01	2	163	2	163	y	0.01	3	278	3	278	y	0.01	3	225	3	225	y	0.01	2	311	2	311	y	0.01	1	181	1	181	n	0.01	2	218	2	218	y	0.01	1	188	1	188	n	0.02	3	171	3	171	y	0.00	0	264	0	264	n	0.02	3	185	3	185	y	0.01	3	217	3	217	y	ENSMUSG00000018442.14	Derl2	chr11	protein_coding	Der1-like domain family, member 2
known_NIR_3291	chr11	70909203	70910217	-	70909203	70909970	5pMXE	ENSMUST00000108523.10	known	0.00	0	168	0	168	n	0.02	3	163	3	163	y	0.01	2	278	2	278	y	0.00	1	225	1	225	n	0.01	2	311	2	311	y	0.00	0	181	0	181	n	0.00	1	218	1	218	n	0.00	0	188	0	188	n	0.00	0	171	0	171	n	0.00	1	264	1	264	n	0.02	3	185	3	185	y	0.00	0	217	0	217	n	ENSMUSG00000018442.14	Derl2	chr11	protein_coding	Der1-like domain family, member 2
known_NIR_3292	chr11	72194288	72195492	+	72194288	72199433	A3SS	ENSMUST00000151440.8	known	0.50	10	10	10	10	y	0.60	15	10	15	10	y	0.70	21	9	21	9	y	0.53	10	9	10	9	y	0.61	14	9	14	9	y	0.44	4	5	4	5	n	0.79	11	3	11	3	y	0.88	7	1	7	1	n	0.57	8	6	8	6	y	0.60	9	6	9	6	y	0.42	5	7	5	7	y	0.67	8	4	8	4	y	ENSMUSG00000040483.16	Xaf1	chr11	protein_coding	XIAP associated factor 1
known_NIR_3293	chr11	72194288	72197390	+	72194288;72195687	72195492;72197390	ES	ENSMUST00000146233.8	known	0.58	14	10.0	14	10;10	y	0.50	12	12.0	12	15;9	y	0.47	22	24.5	22	21;28	y	0.24	3	9.5	3	10;9	y	0.46	13	15.0	13	14;16	y	0.67	8	4.0	8	4;4	y	0.55	12	10.0	12	11;9	y	0.55	6	5.0	6	7;3	y	0.24	3	9.5	3	8;11	y	0.61	15	9.5	15	9;10	y	0.48	5	5.5	5	5;6	y	0.26	4	11.5	4	8;15	y	ENSMUSG00000040483.16	Xaf1	chr11	protein_coding	XIAP associated factor 1
known_NIR_3294	chr11	72194288;72197478	72197390;72199433	+	72194288	72199433	cassetteExon	ENSMUST00000151440.8	known	0.64	17.5	10	14;21	10	y	0.64	18.0	10	12;24	10	y	0.83	44.0	9	22;66	9	y	0.56	11.5	9	3;20	9	y	0.66	17.5	9	13;22	9	y	0.63	8.5	5	8;9	5	y	0.87	20.0	3	12;28	3	y	0.91	10.5	1	6;15	1	n	0.66	11.5	6	3;20	6	y	0.83	29.5	6	15;44	6	y	0.65	13.0	7	5;21	7	y	0.74	11.5	4	4;19	4	y	ENSMUSG00000040483.16	Xaf1	chr11	protein_coding	XIAP associated factor 1
known_NIR_3295	chr11	72326590;72327467	72327265;72327965	+	72326590	72327965	cassetteExon	ENSMUST00000108499.2	known	0.56	23.0	18	44;2	18	y	0.83	28.5	6	57;0	6	n	0.61	12.5	8	23;2	8	y	0.65	31.0	17	62;0	17	n	0.67	42.5	21	85;0	21	n	0.49	10.5	11	21;0	11	n	0.47	26.0	29	52;0	29	n	0.52	16.5	15	31;2	15	y	0.53	20.0	18	39;1	18	n	0.74	37.0	13	74;0	13	n	0.61	25.5	16	51;0	16	n	0.73	35.5	13	70;1	13	n	ENSMUSG00000040471.18	Ggt6	chr11	protein_coding	gamma-glutamyltransferase 6
known_NIR_3296	chr11	72326590;72327658	72327265;72327965	+	72326590	72327965	cassetteExon	ENSMUST00000108499.2	known	0.83	91.0	18	44;138	18	y	0.94	91.5	6	57;126	6	y	0.81	34.5	8	23;46	8	y	0.84	89.5	17	62;117	17	y	0.84	109.0	21	85;133	21	y	0.79	41.5	11	21;62	11	y	0.77	99.0	29	52;146	29	y	0.78	53.5	15	31;76	15	y	0.82	80.0	18	39;121	18	y	0.90	112.5	13	74;151	13	y	0.84	83.0	16	51;115	16	y	0.88	92.0	13	70;114	13	y	ENSMUSG00000040471.18	Ggt6	chr11	protein_coding	gamma-glutamyltransferase 6
known_NIR_3297	chr11	72327467	72327965	+	72327467;72327658	72327545;72327965	ES	ENSMUST00000076443.10	known	0.02	2	94.5	2	51;138	y	0.00	0	97.5	0	69;126	n	0.05	2	40.5	2	35;46	y	0.00	0	110.0	0	103;117	n	0.00	0	122.5	0	112;133	n	0.00	0	52.0	0	42;62	n	0.00	0	121.5	0	97;146	n	0.03	2	60.5	2	45;76	y	0.01	1	90.0	1	59;121	n	0.00	0	126.0	0	101;151	n	0.00	0	98.0	0	81;115	n	0.01	1	92.5	1	71;114	n	ENSMUSG00000040471.18	Ggt6	chr11	protein_coding	gamma-glutamyltransferase 6
known_NIR_3298	chr11	72344540	72344880	-	72344426	72344880	A3SS	ENSMUST00000045303.10	known	0.03	1	30	1	30	n	0.00	0	39	0	39	n	0.00	0	20	0	20	n	0.12	4	29	4	29	y	0.00	0	41	0	41	n	0.05	1	19	1	19	n	0.08	3	35	3	35	y	0.00	0	32	0	32	n	0.05	2	38	2	38	y	0.00	0	46	0	46	n	0.03	1	37	1	37	n	0.00	0	19	0	19	n	ENSMUSG00000040447.16	Spns2	chr11	protein_coding	spinster homolog 2
known_NIR_3299	chr11	72365596	72365707	-	72365596	72380252	A5SS	ENSMUST00000045303.10	known	0.93	26	2	26	2	y	1.00	20	0	20	0	n	0.83	19	4	19	4	y	0.94	30	2	30	2	y	0.93	40	3	40	3	y	0.96	24	1	24	1	n	0.95	18	1	18	1	n	1.00	23	0	23	0	n	1.00	26	0	26	0	n	1.00	26	0	26	0	n	1.00	19	0	19	0	n	0.91	29	3	29	3	y	ENSMUSG00000040447.16	Spns2	chr11	protein_coding	spinster homolog 2
known_NIR_3300	chr11	72498461;72536478	72536363;72553897	+	72498461	72553897	cassetteExon	ENSMUST00000021148.13	known	0.06	5.5	90	0;11	90	n	0.06	3.5	55	3;4	55	y	0.11	13.0	105	7;19	105	y	0.05	4.5	95	1;8	95	n	0.09	10.5	113	8;13	113	y	0.03	2.0	67	0;4	67	n	0.08	12.5	137	4;21	137	y	0.05	2.5	51	2;3	51	y	0.05	4.5	83	1;8	83	n	0.04	5.5	126	0;11	126	n	0.07	5.0	66	0;10	66	n	0.07	8.5	116	7;10	116	y	ENSMUSG00000020794.14	Ube2g1	chr11	protein_coding	ubiquitin-conjugating enzyme E2G 1
known_NIR_3301	chr11	72630883	72631228	+	72630932	72631228	A5SS	ENSMUST00000127610.8	known	1.00	6	0	6	0	n	1.00	4	0	4	0	n	1.00	17	0	17	0	n	1.00	11	0	11	0	n	0.91	21	2	21	2	y	1.00	9	0	9	0	n	1.00	14	0	14	0	n	1.00	10	0	10	0	n	1.00	7	0	7	0	n	1.00	15	0	15	0	n	1.00	7	0	7	0	n	1.00	18	0	18	0	n	ENSMUSG00000020790.15	Ankfy1	chr11	protein_coding	ankyrin repeat and FYVE domain containing 1
known_NIR_3302	chr11	72680043	72686843	-	72680043	72686339	5pMXE	ENSMUST00000079681.6	known	0.36	10	18	10	18	y	0.20	2	8	2	8	y	0.46	11	13	11	13	y	0.29	7	17	7	17	y	0.28	15	38	15	38	y	0.36	5	9	5	9	y	0.14	6	37	6	37	y	0.12	3	22	3	22	y	0.36	5	9	5	9	y	0.27	10	27	10	27	y	0.33	4	8	4	8	y	0.26	6	17	6	17	y	ENSMUSG00000057778.15	Cyb5d2	chr11	protein_coding	cytochrome b5 domain containing 2
known_NIR_3303	chr11	73067577	73067682	-	73067577	73067765	A5SS	ENSMUST00000054952.4	known	0.02	4	254	4	254	y	0.02	5	255	5	255	y	0.01	3	317	3	317	y	0.03	10	345	10	345	y	0.01	4	372	4	372	y	0.03	6	169	6	169	y	0.03	14	404	14	404	y	0.02	3	171	3	171	y	0.01	3	234	3	234	y	0.02	7	356	7	356	y	0.01	3	333	3	333	y	0.02	7	326	7	326	y	ENSMUSG00000047260.5	Emc6	chr11	protein_coding	ER membrane protein complex subunit 6
known_NIR_3304	chr11	73087543;73088078	73087925;73089744	-	73087543	73089744	cassetteExon	ENSMUST00000006103.9	known	0.29	7.0	17	8;6	17	y	0.18	2.0	9	1;3	9	n	0.24	10.5	34	13;8	34	y	0.19	7.0	29	7;7	29	y	0.26	7.5	21	9;6	21	y	0.12	3.5	26	2;5	26	y	0.16	3.0	16	0;6	16	n	0.12	3.0	23	3;3	23	y	0.28	3.5	9	1;6	9	n	0.17	5.5	26	7;4	26	y	0.18	3.5	16	3;4	16	y	0.27	6.0	16	4;8	16	y	ENSMUSG00000005949.10	Ctns	chr11	protein_coding	cystinosis, nephropathic
known_NIR_3305	chr11	73094889	73104157	+	73094889	73097142	A3SS&ES	ENSMUST00000131927.9	known	0.97	62	2	62	2	y	0.98	43	1	43	1	n	1.00	57	0	57	0	n	0.96	88	4	88	4	y	0.99	97	1	97	1	n	0.96	27	1	27	1	n	0.97	61	2	61	2	y	0.96	44	2	44	2	y	1.00	44	0	44	0	n	0.98	96	2	96	2	y	1.00	70	0	70	0	n	0.96	80	3	80	3	y	ENSMUSG00000005951.14	Shpk	chr11	protein_coding	sedoheptulokinase
known_NIR_3306	chr11	73213107;73214057	73213905;73215081	-	73213107	73215081	cassetteExon	ENSMUST00000021119.9	known	0.21	4.0	15	4;4	15	y	0.03	0.5	14	0;1	14	n	0.22	4.5	16	2;7	16	y	0.08	3.0	36	2;4	36	y	0.17	5.0	24	6;4	24	y	0.00	0.0	3	0;0	3	n	0.07	3.5	45	5;2	45	y	0.08	1.0	12	1;1	12	n	0.11	3.5	29	4;3	29	y	0.09	6.0	62	7;5	62	y	0.08	2.5	27	5;0	27	n	0.03	1.0	35	0;2	35	n	ENSMUSG00000020774.10	Aspa	chr11	protein_coding	aspartoacylase
known_NIR_3307	chr11	74540520	74547249	+	74540520;74541004	74540916;74547249	ES	ENSMUST00000130398.2	known	0.99	81	0.5	81	1;0	n	0.98	47	1.0	47	1;1	n	1.00	109	0.0	109	0;0	n	1.00	132	0.5	132	1;0	n	0.98	163	3.5	163	5;2	y	0.96	67	3.0	67	3;3	y	0.99	96	0.5	96	1;0	n	0.99	92	0.5	92	0;1	n	1.00	72	0.0	72	0;0	n	1.00	123	0.0	123	0;0	n	0.98	77	1.5	77	0;3	n	1.00	142	0.5	142	0;1	n	ENSMUSG00000020741.18	Cluh	chr11	protein_coding	clustered mitochondria (cluA/CLU1) homolog
known_NIR_3308	chr11	74540520	74547249	+	74540944	74547249	5pMXE	ENSMUST00000127679.2	known	0.93	81	6	81	6	y	0.98	47	1	47	1	n	0.96	109	4	109	4	y	0.98	132	3	132	3	y	0.94	163	10	163	10	y	0.91	67	7	67	7	y	0.91	96	10	96	10	y	0.95	92	5	92	5	y	0.97	72	2	72	2	y	0.98	123	3	123	3	y	0.92	77	7	77	7	y	0.97	142	5	142	5	y	ENSMUSG00000020741.18	Cluh	chr11	protein_coding	clustered mitochondria (cluA/CLU1) homolog
known_NIR_3309	chr11	74540520;74540944	74540916;74547249	+	74540520	74547249	cassetteExon	ENSMUST00000117818.2	known	0.04	3.5	81	1;6	81	n	0.02	1.0	47	1;1	47	n	0.02	2.0	109	0;4	109	n	0.01	2.0	132	1;3	132	n	0.04	7.5	163	5;10	163	y	0.07	5.0	67	3;7	67	y	0.05	5.5	96	1;10	96	n	0.03	2.5	92	0;5	92	n	0.01	1.0	72	0;2	72	n	0.01	1.5	123	0;3	123	n	0.04	3.5	77	0;7	77	n	0.02	2.5	142	0;5	142	n	ENSMUSG00000020741.18	Cluh	chr11	protein_coding	clustered mitochondria (cluA/CLU1) homolog
known_NIR_3310	chr11	74540944	74547249	+	74541004	74547249	A5SS	ENSMUST00000130398.2	known	1.00	6	0	6	0	n	0.50	1	1	1	1	n	1.00	4	0	4	0	n	1.00	3	0	3	0	n	0.83	10	2	10	2	y	0.70	7	3	7	3	y	1.00	10	0	10	0	n	0.83	5	1	5	1	n	1.00	2	0	2	0	n	1.00	3	0	3	0	n	0.70	7	3	7	3	y	0.83	5	1	5	1	n	ENSMUSG00000020741.18	Cluh	chr11	protein_coding	clustered mitochondria (cluA/CLU1) homolog
known_NIR_3311	chr11	74556892	74556981	+	74556902	74556981	A5SS	ENSMUST00000117818.2	known	0.03	7	244	7	244	y	0.03	5	178	5	178	y	0.03	6	195	6	195	y	0.01	4	326	4	326	y	0.02	10	412	10	412	y	0.02	4	157	4	157	y	0.02	9	352	9	352	y	0.02	4	196	4	196	y	0.04	8	196	8	196	y	0.02	7	327	7	327	y	0.04	11	260	11	260	y	0.02	6	284	6	284	y	ENSMUSG00000020741.18	Cluh	chr11	protein_coding	clustered mitochondria (cluA/CLU1) homolog
known_NIR_3312	chr11	74590346	74614026	-	74590346	74614825	A5SS	ENSMUST00000126341.8	known	0.08	3	36	3	36	y	0.00	0	18	0	18	n	0.04	2	52	2	52	y	0.17	11	54	11	54	y	0.08	4	46	4	46	y	0.28	7	18	7	18	y	0.12	7	49	7	49	y	0.00	0	20	0	20	n	0.04	1	26	1	26	n	0.18	9	42	9	42	y	0.09	3	30	3	30	y	0.10	5	44	5	44	y	ENSMUSG00000020745.16	Pafah1b1	chr11	protein_coding	platelet-activating factor acetylhydrolase, isoform 1b, subunit 1
known_NIR_3313	chr11	74662091	74664348	+	74661810	74664348	A5SS	ENSMUST00000010698.13	known	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.00	0	19	0	19	n	0.00	0	22	0	22	n	0.00	0	20	0	20	n	0.14	2	12	2	12	y	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.00	0	16	0	16	n	0.00	0	21	0	21	n	0.00	0	16	0	16	n	0.00	0	13	0	13	n	ENSMUSG00000010554.15	Mettl16	chr11	protein_coding	methyltransferase like 16
known_NIR_3314	chr11	74683144;74686643	74686578;74686808	+	74683144	74686808	cassetteExon	ENSMUST00000010698.13	known	0.03	0.5	16	1;0	16	n	0.00	0.0	26	0;0	26	n	0.03	0.5	18	0;1	18	n	0.04	1.0	25	2;0	25	n	0.12	4.0	28	5;3	28	y	0.21	3.5	13	2;5	13	y	0.06	1.0	17	1;1	17	n	0.10	1.5	13	2;1	13	n	0.00	0.0	18	0;0	18	n	0.04	1.0	23	1;1	23	n	0.02	0.5	22	1;0	22	n	0.11	2.5	20	2;3	20	y	ENSMUSG00000010554.15	Mettl16	chr11	protein_coding	methyltransferase like 16
known_NIR_3315	chr11	74750725;74754520	74754386;74755911	-	74750725	74755911	cassetteExon	ENSMUST00000057631.12	known	0.04	0.5	11	1;0	11	n	0.14	0.5	3	0;1	3	n	0.20	1.0	4	0;2	4	n	0.33	3.0	6	3;3	6	y	0.30	3.0	7	2;4	7	y	0.00	0.0	3	0;0	3	n	0.22	2.5	9	5;0	9	n	0.20	0.5	2	1;0	2	n	0.00	0.0	5	0;0	5	n	0.33	2.0	4	3;1	4	n	1.00	1.0	0	1;1	0	n	0.43	4.5	6	4;5	6	y	ENSMUSG00000038351.15	Sgsm2	chr11	protein_coding	small G protein signaling modulator 2
known_NIR_3316	chr11	74800031	74801027	-	74800031;74800594	74800520;74801027	ES	ENSMUST00000065211.9	known	0.01	1	169.0	1	140;198	n	0.00	0	122.5	0	120;125	n	0.04	4	110.0	4	111;109	y	0.00	0	188.0	0	169;207	n	0.01	2	230.0	2	221;239	y	0.10	7	62.5	7	56;69	y	0.00	0	221.5	0	210;233	n	0.00	0	102.0	0	97;107	n	0.00	0	164.0	0	149;179	n	0.02	4	250.5	4	239;262	y	0.00	0	180.0	0	166;194	n	0.00	0	203.0	0	169;237	n	ENSMUSG00000001323.18	Srr	chr11	protein_coding	serine racemase
known_NIR_3317	chr11	74800031	74801027	-	74800594	74801027	3pMXE	ENSMUST00000128556.8	known	0.01	1	198	1	198	n	0.00	0	125	0	125	n	0.04	4	109	4	109	y	0.00	0	207	0	207	n	0.01	2	239	2	239	y	0.09	7	69	7	69	y	0.00	0	233	0	233	n	0.00	0	107	0	107	n	0.00	0	179	0	179	n	0.02	4	262	4	262	y	0.00	0	194	0	194	n	0.00	0	237	0	237	n	ENSMUSG00000001323.18	Srr	chr11	protein_coding	serine racemase
known_NIR_3318	chr11	74803959	74816445	-	74803959	74810263	A5SS&ES	ENSMUST00000138612.2	known	0.10	16	142	16	142	y	0.12	13	94	13	94	y	0.12	14	101	14	101	y	0.13	25	161	25	161	y	0.11	23	180	23	180	y	0.11	6	49	6	49	y	0.07	15	195	15	195	y	0.17	14	69	14	69	y	0.09	10	103	10	103	y	0.08	18	195	18	195	y	0.14	22	130	22	130	y	0.14	24	151	24	151	y	ENSMUSG00000001323.18	Srr	chr11	protein_coding	serine racemase
known_NIR_3319	chr11	74803959	74816445	-	74803959;74810488	74810263;74816445	ES	ENSMUST00000065211.9	known	0.12	16	115.5	16	142;89	y	0.15	13	72.0	13	94;50	y	0.13	14	90.5	14	101;80	y	0.14	25	157.0	25	161;153	y	0.13	23	160.0	23	180;140	y	0.11	6	47.5	6	49;46	y	0.08	15	161.5	15	195;128	y	0.19	14	60.5	14	69;52	y	0.10	10	93.0	10	103;83	y	0.10	18	163.0	18	195;131	y	0.18	22	102.5	22	130;75	y	0.15	24	141.5	24	151;132	y	ENSMUSG00000001323.18	Srr	chr11	protein_coding	serine racemase
known_NIR_3320	chr11	74810488	74816410	-	74810488	74816445	A5SS	ENSMUST00000065211.9	known	0.05	5	89	5	89	y	0.17	10	50	10	50	y	0.09	8	80	8	80	y	0.06	9	153	9	153	y	0.07	11	140	11	140	y	0.10	5	46	5	46	y	0.10	14	128	14	128	y	0.10	6	52	6	52	y	0.05	4	83	4	83	y	0.06	9	131	9	131	y	0.13	11	75	11	75	y	0.13	19	132	19	132	y	ENSMUSG00000001323.18	Srr	chr11	protein_coding	serine racemase
known_NIR_3321	chr11	74810488	74816430	-	74810488	74816410	A5SS	ENSMUST00000128556.8	known	0.00	0	5	0	5	n	0.17	2	10	2	10	y	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.12	2	14	2	14	y	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.05	1	19	1	19	n	ENSMUSG00000001323.18	Srr	chr11	protein_coding	serine racemase
known_NIR_3322	chr11	74810488	74816430	-	74810488	74816445	A5SS	ENSMUST00000065211.9	known	0.00	0	89	0	89	n	0.04	2	50	2	50	y	0.00	0	80	0	80	n	0.00	0	153	0	153	n	0.00	0	140	0	140	n	0.00	0	46	0	46	n	0.02	2	128	2	128	y	0.00	0	52	0	52	n	0.00	0	83	0	83	n	0.00	0	131	0	131	n	0.00	0	75	0	75	n	0.01	1	132	1	132	n	ENSMUSG00000001323.18	Srr	chr11	protein_coding	serine racemase
known_NIR_3323	chr11	74837045	74880896	+	74837045;74872739	74872678;74880896	ES	ENSMUST00000045281.13	known	0.11	2	16.5	2	14;19	y	0.00	0	14.5	0	16;13	n	0.00	0	29.0	0	30;28	n	0.05	1	20.5	1	19;22	n	0.00	0	36.0	0	36;36	n	0.00	0	23.0	0	19;27	n	0.03	1	30.0	1	30;30	n	0.00	0	30.0	0	28;32	n	0.04	1	22.5	1	24;21	n	0.00	0	40.5	0	40;41	n	0.00	0	23.0	0	19;27	n	0.00	0	43.0	0	49;37	n	ENSMUSG00000038290.16	Smg6	chr11	protein_coding	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)
known_NIR_3324	chr11	75069213	75069456	-	75069213	75069438	A5SS	ENSMUST00000071562.3	known	0.00	0	25	0	25	n	0.11	2	16	2	16	y	0.05	3	56	3	56	y	0.06	1	16	1	16	n	0.17	7	33	7	33	y	0.04	1	25	1	25	n	0.04	2	43	2	43	y	0.06	2	31	2	31	y	0.12	2	15	2	15	y	0.00	0	15	0	15	n	0.00	0	31	0	31	n	0.14	3	19	3	19	y	ENSMUSG00000038268.5	Ovca2	chr11	protein_coding	candidate tumor suppressor in ovarian cancer 2
known_NIR_3325	chr11	75069213	75069751	-	75069213	75069438	5pMXE	ENSMUST00000071562.3	known	0.58	34	25	34	25	y	0.71	39	16	39	16	y	0.26	20	56	20	56	y	0.69	36	16	36	16	y	0.63	57	33	57	33	y	0.40	17	25	17	25	y	0.51	44	43	44	43	y	0.23	9	31	9	31	y	0.65	28	15	28	15	y	0.72	38	15	38	15	y	0.48	29	31	29	31	y	0.67	39	19	39	19	y	ENSMUSG00000038268.5	Ovca2	chr11	protein_coding	candidate tumor suppressor in ovarian cancer 2
known_NIR_3326	chr11	75069213	75069751	-	75069213	75069456	5pMXE	ENSMUST00000123489.2	known	1.00	34	0	34	0	n	0.95	39	2	39	2	y	0.87	20	3	20	3	y	0.97	36	1	36	1	n	0.89	57	7	57	7	y	0.94	17	1	17	1	n	0.96	44	2	44	2	y	0.82	9	2	9	2	y	0.93	28	2	28	2	y	1.00	38	0	38	0	n	1.00	29	0	29	0	n	0.93	39	3	39	3	y	ENSMUSG00000038268.5	Ovca2	chr11	protein_coding	candidate tumor suppressor in ovarian cancer 2
known_NIR_3327	chr11	75304870	75305747	-	75304875	75305747	A3SS	ENSMUST00000000769.14	known	0.01	16	1399	16	1399	y	0.01	18	1240	18	1240	y	0.01	7	587	7	587	y	0.01	20	1694	20	1694	y	0.02	20	1248	20	1248	y	0.02	6	290	6	290	y	0.01	17	1460	17	1460	y	0.00	0	487	0	487	n	0.02	27	1628	27	1628	y	0.01	30	2254	30	2254	y	0.02	42	1880	42	1880	y	0.02	39	2552	39	2552	y	ENSMUSG00000000753.16	Serpinf1	chr11	protein_coding	serine (or cysteine) peptidase inhibitor, clade F, member 1
known_NIR_3328	chr11	75305950	75307056	-	75305950	75306401	5pMXE	ENSMUST00000167281.8	known	0.00	0	1366	0	1366	n	0.00	0	1138	0	1138	n	0.00	2	613	2	613	y	0.00	0	1633	0	1633	n	0.00	0	1235	0	1235	n	0.00	0	267	0	267	n	0.00	0	1404	0	1404	n	0.00	0	470	0	470	n	0.00	1	1550	1	1550	n	0.00	0	2192	0	2192	n	0.00	0	1829	0	1829	n	0.00	0	2403	0	2403	n	ENSMUSG00000000753.16	Serpinf1	chr11	protein_coding	serine (or cysteine) peptidase inhibitor, clade F, member 1
known_NIR_3329	chr11	75305950	75307056	-	75305950;75306556	75306401;75307056	ES	ENSMUST00000000769.14	known	0.00	0	1230.0	0	1366;1094	n	0.00	0	1050.0	0	1138;962	n	0.00	2	574.5	2	613;536	y	0.00	0	1530.5	0	1633;1428	n	0.00	0	1196.0	0	1235;1157	n	0.00	0	268.5	0	267;270	n	0.00	0	1304.5	0	1404;1205	n	0.00	0	442.0	0	470;414	n	0.00	1	1470.5	1	1550;1391	n	0.00	0	2048.0	0	2192;1904	n	0.00	0	1724.0	0	1829;1619	n	0.00	0	2269.0	0	2403;2135	n	ENSMUSG00000000753.16	Serpinf1	chr11	protein_coding	serine (or cysteine) peptidase inhibitor, clade F, member 1
known_NIR_3330	chr11	75305950	75307056	-	75306556	75307056	3pMXE	ENSMUST00000125982.2	known	0.00	0	1094	0	1094	n	0.00	0	962	0	962	n	0.00	2	536	2	536	y	0.00	0	1428	0	1428	n	0.00	0	1157	0	1157	n	0.00	0	270	0	270	n	0.00	0	1205	0	1205	n	0.00	0	414	0	414	n	0.00	1	1391	1	1391	n	0.00	0	1904	0	1904	n	0.00	0	1619	0	1619	n	0.00	0	2135	0	2135	n	ENSMUSG00000000753.16	Serpinf1	chr11	protein_coding	serine (or cysteine) peptidase inhibitor, clade F, member 1
known_NIR_3331	chr11	75308822;75309272	75309223;75313322	-	75308822	75313322	cassetteExon	ENSMUST00000000769.14	known	0.00	2.5	572	1;4	572	n	0.00	0.0	466	0;0	466	n	0.00	0.0	284	0;0	284	n	0.00	0.5	794	0;1	794	n	0.01	4.0	667	5;3	667	y	0.00	0.0	173	0;0	173	n	0.00	2.0	666	2;2	666	y	0.00	0.0	259	0;0	259	n	0.00	1.5	691	2;1	691	n	0.00	2.0	1034	4;0	1034	n	0.00	1.5	769	1;2	769	n	0.00	0.0	1072	0;0	1072	n	ENSMUSG00000000753.16	Serpinf1	chr11	protein_coding	serine (or cysteine) peptidase inhibitor, clade F, member 1
known_NIR_3332	chr11	75328381	75328854	-	75328381	75328864	A5SS	ENSMUST00000108437.8	known	0.01	17	1515	17	1515	y	0.01	19	1328	19	1328	y	0.01	23	1627	23	1627	y	0.01	21	1992	21	1992	y	0.01	38	2733	38	2733	y	0.01	11	1037	11	1037	y	0.02	37	1878	37	1878	y	0.02	25	1272	25	1272	y	0.01	18	1287	18	1287	y	0.02	32	1888	32	1888	y	0.02	23	1226	23	1226	y	0.01	23	1902	23	1902	y	ENSMUSG00000038224.13	Serpinf2	chr11	protein_coding	serine (or cysteine) peptidase inhibitor, clade F, member 2
known_NIR_3333	chr11	75329284	75330283	-	75329284	75329699	5pMXE	ENSMUST00000108437.8	known	0.98	1268	25	1268	25	y	0.98	1092	26	1092	26	y	0.98	1356	22	1356	22	y	0.99	1614	20	1614	20	y	0.98	2228	40	2228	40	y	0.98	937	18	937	18	y	0.98	1543	24	1543	24	y	0.98	1061	21	1061	21	y	0.99	1106	15	1106	15	y	0.98	1563	26	1563	26	y	0.99	1016	6	1016	6	y	0.98	1645	26	1645	26	y	ENSMUSG00000038224.13	Serpinf2	chr11	protein_coding	serine (or cysteine) peptidase inhibitor, clade F, member 2
known_NIR_3334	chr11	75332915	75335524	-	75332915;75335260	75335081;75335524	ES	ENSMUST00000173320.8	known	0.00	0	61.0	0	67;55	n	0.02	1	53.0	1	60;46	n	0.00	0	58.0	0	65;51	n	0.00	0	63.0	0	71;55	n	0.00	0	82.0	0	96;68	n	0.00	0	34.0	0	40;28	n	0.02	2	78.5	2	80;77	y	0.00	0	30.5	0	38;23	n	0.00	0	52.5	0	51;54	n	0.03	2	65.5	2	72;59	y	0.03	2	64.5	2	84;45	y	0.00	0	76.0	0	81;71	n	ENSMUSG00000045374.19	Wdr81	chr11	protein_coding	WD repeat domain 81
known_NIR_3335	chr11	75354683	75359383	+	75354683	75356133	3pMXE	ENSMUST00000149940.2	known	0.06	3	45	3	45	y	0.08	3	36	3	36	y	0.00	0	53	0	53	n	0.07	3	38	3	38	y	0.09	7	67	7	67	y	0.04	1	25	1	25	n	0.01	1	99	1	99	n	0.00	0	29	0	29	n	0.09	4	43	4	43	y	0.01	1	91	1	91	n	0.07	5	69	5	69	y	0.06	5	84	5	84	y	ENSMUSG00000085148.2	Mir22hg	chr11	lncRNA	Mir22 host gene (non-protein coding)
known_NIR_3336	chr11	75359203	75359383	+	75354683	75359383	A5SS	ENSMUST00000124718.8	known	0.98	128	3	128	3	y	0.97	110	3	110	3	y	1.00	27	0	27	0	n	0.99	215	3	215	3	y	0.96	181	7	181	7	y	0.95	21	1	21	1	n	0.99	119	1	119	1	n	1.00	18	0	18	0	n	0.98	211	4	211	4	y	1.00	247	1	247	1	n	0.98	217	5	217	5	y	0.96	113	5	113	5	y	ENSMUSG00000038217.14	Tlcd2	chr11	protein_coding	TLC domain containing 2
known_NIR_3337	chr11	75360444	75361226	+	75360727	75361226	A5SS	ENSMUST00000043598.14	known	0.16	11	58	11	58	y	0.03	2	60	2	60	y	0.25	4	12	4	12	y	0.13	10	65	10	65	y	0.13	8	53	8	53	y	0.27	4	11	4	11	y	0.09	7	69	7	69	y	0.06	1	16	1	16	n	0.10	10	92	10	92	y	0.13	16	111	16	111	y	0.10	11	94	11	94	y	0.07	4	52	4	52	y	ENSMUSG00000038217.14	Tlcd2	chr11	protein_coding	TLC domain containing 2
known_NIR_3338	chr11	75522023	75523930	+	75522023	75523895	A3SS	ENSMUST00000006286.9	known	0.09	2	21	2	21	y	0.00	0	13	0	13	n	0.00	0	23	0	23	n	0.00	0	12	0	12	n	0.04	1	26	1	26	n	0.00	0	16	0	16	n	0.04	1	27	1	27	n	0.00	0	21	0	21	n	0.00	0	17	0	17	n	0.00	0	23	0	23	n	0.00	0	13	0	13	n	0.00	0	22	0	22	n	ENSMUSG00000006127.10	Inpp5k	chr11	protein_coding	inositol polyphosphate 5-phosphatase K
known_NIR_3339	chr11	75527886	75528044	+	75527886	75528236	A3SS	ENSMUST00000006286.9	known	0.09	1	10	1	10	n	0.00	0	14	0	14	n	0.00	0	24	0	24	n	0.00	0	16	0	16	n	0.00	0	26	0	26	n	0.00	0	12	0	12	n	0.00	0	25	0	25	n	0.00	0	13	0	13	n	0.08	2	24	2	24	y	0.07	2	27	2	27	y	0.14	3	18	3	18	y	0.00	0	21	0	21	n	ENSMUSG00000006127.10	Inpp5k	chr11	protein_coding	inositol polyphosphate 5-phosphatase K
known_NIR_3340	chr11	75537761	75538019	+	75537749	75538019	A5SS	ENSMUST00000006286.9	known	0.04	1	24	1	24	n	0.00	0	24	0	24	n	0.00	0	21	0	21	n	0.00	0	20	0	20	n	0.00	0	44	0	44	n	0.00	0	16	0	16	n	0.00	0	29	0	29	n	0.00	0	12	0	12	n	0.00	0	18	0	18	n	0.04	2	45	2	45	y	0.00	0	25	0	25	n	0.00	0	23	0	23	n	ENSMUSG00000006127.10	Inpp5k	chr11	protein_coding	inositol polyphosphate 5-phosphatase K
known_NIR_3341	chr11	75542491	75548318	+	75541590	75548318	A5SS	ENSMUST00000102505.10	known	0.95	18	1	18	1	n	1.00	9	0	9	0	n	0.89	31	4	31	4	y	1.00	18	0	18	0	n	0.84	26	5	26	5	y	1.00	13	0	13	0	n	1.00	11	0	11	0	n	1.00	16	0	16	0	n	0.50	3	3	3	3	n	0.88	21	3	21	3	y	1.00	9	0	9	0	n	1.00	14	0	14	0	n	ENSMUSG00000017774.20	Myo1c	chr11	protein_coding	myosin IC
known_NIR_3342	chr11	75547027	75548318	+	75542491	75548318	A5SS	ENSMUST00000069057.13	known	0.25	6	18	6	18	y	0.18	2	9	2	9	y	0.06	2	31	2	31	y	0.18	4	18	4	18	y	0.13	4	26	4	26	y	0.00	0	13	0	13	n	0.15	2	11	2	11	y	0.11	2	16	2	16	y	0.40	2	3	2	3	n	0.12	3	21	3	21	y	0.40	6	9	6	9	y	0.33	7	14	7	14	y	ENSMUSG00000017774.20	Myo1c	chr11	protein_coding	myosin IC
known_NIR_3343	chr11	75583388	75591371	+	75583388	75594192	A3SS	ENSMUST00000108425.8	known	0.05	3	58	3	58	y	0.08	4	44	4	44	y	0.12	13	99	13	99	y	0.02	2	80	2	80	y	0.08	7	80	7	80	y	0.19	8	35	8	35	y	0.09	8	85	8	85	y	0.00	0	46	0	46	n	0.04	2	45	2	45	y	0.06	5	80	5	80	y	0.10	7	61	7	61	y	0.05	5	92	5	92	y	ENSMUSG00000017776.16	Crk	chr11	protein_coding	v-crk avian sarcoma virus CT10 oncogene homolog
known_NIR_3344	chr11	75583388	75594192	+	75583558	75594192	A5SS	ENSMUST00000017920.14	known	0.70	58	25	58	25	y	0.68	44	21	44	21	y	0.53	99	89	99	89	y	0.65	80	43	80	43	y	0.62	80	48	80	48	y	0.52	35	32	35	32	y	0.59	85	59	85	59	y	0.56	46	36	46	36	y	0.65	45	24	45	24	y	0.56	80	62	80	62	y	0.62	61	37	61	37	y	0.74	92	32	92	32	y	ENSMUSG00000017776.16	Crk	chr11	protein_coding	v-crk avian sarcoma virus CT10 oncogene homolog
known_NIR_3345	chr11	75583558	75591371	+	75583388	75591371	A5SS	ENSMUST00000093115.4	known	0.25	1	3	1	3	n	0.56	5	4	5	4	n	0.28	5	13	5	13	y	0.33	1	2	1	2	n	0.12	1	7	1	7	n	0.11	1	8	1	8	n	0.11	1	8	1	8	n	1.00	2	0	2	0	n	0.60	3	2	3	2	n	0.38	3	5	3	5	n	0.00	0	7	0	7	n	0.17	1	5	1	5	n	ENSMUSG00000017776.16	Crk	chr11	protein_coding	v-crk avian sarcoma virus CT10 oncogene homolog
known_NIR_3346	chr11	75583558	75591371	+	75583558	75594192	A3SS	ENSMUST00000017920.14	known	0.04	1	25	1	25	n	0.19	5	21	5	21	y	0.05	5	89	5	89	y	0.02	1	43	1	43	n	0.02	1	48	1	48	n	0.03	1	32	1	32	n	0.02	1	59	1	59	n	0.05	2	36	2	36	y	0.11	3	24	3	24	y	0.05	3	62	3	62	y	0.00	0	37	0	37	n	0.03	1	32	1	32	n	ENSMUSG00000017776.16	Crk	chr11	protein_coding	v-crk avian sarcoma virus CT10 oncogene homolog
known_NIR_3347	chr11	75624071	75642707	+	75623917	75642707	A5SS	ENSMUST00000067664.10	known	0.00	0	444	0	444	n	0.00	0	340	0	340	n	0.00	0	657	0	657	n	0.00	0	520	0	520	n	0.02	12	616	12	616	y	0.02	6	337	6	337	y	0.00	0	541	0	541	n	0.00	0	401	0	401	n	0.00	0	366	0	366	n	0.04	22	598	22	598	y	0.04	19	430	19	430	y	0.00	0	501	0	501	n	ENSMUSG00000020849.14	Ywhae	chr11	protein_coding	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
known_NIR_3348	chr11	75646478	75650118	+	75647849	75650118	A5SS&ES	ENSMUST00000067664.10	known	0.00	0	539	0	539	n	0.00	0	540	0	540	n	0.01	4	765	4	765	y	0.00	0	661	0	661	n	0.00	0	744	0	744	n	0.01	3	368	3	368	y	0.00	0	770	0	770	n	0.00	0	384	0	384	n	0.00	0	458	0	458	n	0.00	0	780	0	780	n	0.00	0	546	0	546	n	0.00	0	717	0	717	n	ENSMUSG00000020849.14	Ywhae	chr11	protein_coding	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
known_NIR_3349	chr11	76004903	76007885	-	76004908	76007885	A3SS	ENSMUST00000056601.11	known	0.00	0	51	0	51	n	0.00	0	44	0	44	n	0.06	4	67	4	67	y	0.00	0	62	0	62	n	0.05	4	70	4	70	y	0.00	0	42	0	42	n	0.00	0	47	0	47	n	0.00	0	45	0	45	n	0.00	0	45	0	45	n	0.00	0	51	0	51	n	0.00	0	45	0	45	n	0.00	0	60	0	60	n	ENSMUSG00000017288.16	Vps53	chr11	protein_coding	VPS53 GARP complex subunit
known_NIR_3350	chr11	76029220	76054628	-	76029220	76054624	A5SS	ENSMUST00000056601.11	known	0.00	0	26	0	26	n	0.00	0	27	0	27	n	0.08	3	35	3	35	y	0.02	1	48	1	48	n	0.00	0	48	0	48	n	0.00	0	24	0	24	n	0.03	1	35	1	35	n	0.05	1	21	1	21	n	0.00	0	23	0	23	n	0.05	2	42	2	42	y	0.00	0	28	0	28	n	0.00	0	49	0	49	n	ENSMUSG00000017288.16	Vps53	chr11	protein_coding	VPS53 GARP complex subunit
known_NIR_3351	chr11	76061536	76065453	-	76057074	76065453	A3SS	ENSMUST00000056601.11	known	0.20	10	40	10	40	y	0.12	3	23	3	23	y	0.00	0	63	0	63	n	0.11	7	58	7	58	y	0.07	5	65	5	65	y	0.20	6	24	6	24	y	0.16	10	52	10	52	y	0.11	3	25	3	25	y	0.12	5	37	5	37	y	0.09	6	60	6	60	y	0.20	8	32	8	32	y	0.11	8	66	8	66	y	ENSMUSG00000017288.16	Vps53	chr11	protein_coding	VPS53 GARP complex subunit
known_NIR_3352	chr11	76068208	76070239	-	76065533	76070239	A3SS	ENSMUST00000056601.11	known	0.26	12	34	12	34	y	0.41	14	20	14	20	y	0.20	15	61	15	61	y	0.14	7	43	7	43	y	0.20	12	48	12	48	y	0.47	18	20	18	20	y	0.19	12	50	12	50	y	0.23	7	23	7	23	y	0.22	7	25	7	25	y	0.23	12	41	12	41	y	0.32	12	25	12	25	y	0.11	5	41	5	41	y	ENSMUSG00000017288.16	Vps53	chr11	protein_coding	VPS53 GARP complex subunit
known_NIR_3353	chr11	76093081	76093378	+	76070812	76093378	A5SS	ENSMUST00000129853.8	known	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.14	1	6	1	6	n	0.11	1	8	1	8	n	0.33	1	2	1	2	n	0.27	3	8	3	8	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	ENSMUSG00000069808.14	Tlcd3a	chr11	protein_coding	TLC domain containing 3A
known_NIR_3354	chr11	76131748	76133820	-	76131748	76134381	A5SS	ENSMUST00000169532.8	known	0.00	0	92	0	92	n	0.00	0	104	0	104	n	0.01	1	150	1	150	n	0.02	2	109	2	109	y	0.00	0	97	0	97	n	0.00	0	80	0	80	n	0.00	0	129	0	129	n	0.00	0	66	0	66	n	0.00	0	96	0	96	n	0.00	0	169	0	169	n	0.00	0	106	0	106	n	0.01	1	165	1	165	n	ENSMUSG00000017286.16	Glod4	chr11	protein_coding	glyoxalase domain containing 4
known_NIR_3355	chr11	76131748	76134444	-	76131748	76134381	A5SS	ENSMUST00000169532.8	known	0.02	2	92	2	92	y	0.00	0	104	0	104	n	0.00	0	150	0	150	n	0.00	0	109	0	109	n	0.00	0	97	0	97	n	0.00	0	80	0	80	n	0.00	0	129	0	129	n	0.00	0	66	0	66	n	0.00	0	96	0	96	n	0.00	0	169	0	169	n	0.00	0	106	0	106	n	0.00	0	165	0	165	n	ENSMUSG00000017286.16	Glod4	chr11	protein_coding	glyoxalase domain containing 4
known_NIR_3356	chr11	76298268	76301953	+	76298268;76300664	76300468;76301953	ES	ENSMUST00000021203.7	known	0.10	4	38.0	4	35;41	y	0.04	2	44.5	2	40;49	y	0.08	4	45.5	4	38;53	y	0.05	2	39.0	2	39;39	y	0.08	5	61.5	5	44;79	y	0.03	1	35.5	1	27;44	n	0.05	3	59.0	3	40;78	y	0.10	3	26.5	3	21;32	y	0.03	1	34.0	1	21;47	n	0.09	6	63.5	6	47;80	y	0.11	6	48.5	6	35;62	y	0.03	1	37.0	1	34;40	n	ENSMUSG00000020843.16	Timm22	chr11	protein_coding	translocase of inner mitochondrial membrane 22
known_NIR_3357	chr11	76298268	76301953	+	76300664	76301953	A5SS&ES	ENSMUST00000120699.8	known	0.09	4	41	4	41	y	0.04	2	49	2	49	y	0.07	4	53	4	53	y	0.05	2	39	2	39	y	0.06	5	79	5	79	y	0.02	1	44	1	44	n	0.04	3	78	3	78	y	0.09	3	32	3	32	y	0.02	1	47	1	47	n	0.07	6	80	6	80	y	0.09	6	62	6	62	y	0.02	1	40	1	40	n	ENSMUSG00000020843.16	Timm22	chr11	protein_coding	translocase of inner mitochondrial membrane 22
known_NIR_3358	chr11	76837265	76841870	+	76837265	76840786	A3SS	ENSMUST00000140193.8	known	0.00	0	68	0	68	n	0.00	0	33	0	33	n	0.00	0	68	0	68	n	0.00	0	77	0	77	n	0.03	2	63	2	63	y	0.00	0	27	0	27	n	0.00	0	52	0	52	n	0.00	0	28	0	28	n	0.02	1	59	1	59	n	0.01	1	95	1	95	n	0.02	1	50	1	50	n	0.00	0	84	0	84	n	ENSMUSG00000020840.11	Blmh	chr11	protein_coding	bleomycin hydrolase
known_NIR_3359	chr11	76837265	76841870	+	76837265;76840895	76840786;76841870	ES	ENSMUST00000140781.9	known	0.00	0	65.5	0	68;63	n	0.00	0	43.5	0	33;54	n	0.00	0	67.0	0	68;66	n	0.00	0	82.5	0	77;88	n	0.03	2	69.0	2	63;75	y	0.00	0	28.0	0	27;29	n	0.00	0	55.5	0	52;59	n	0.00	0	32.0	0	28;36	n	0.02	1	59.0	1	59;59	n	0.01	1	91.0	1	95;87	n	0.02	1	51.0	1	50;52	n	0.00	0	79.5	0	84;75	n	ENSMUSG00000020840.11	Blmh	chr11	protein_coding	bleomycin hydrolase
known_NIR_3360	chr11	76967570	76968800	-	76967570	76969205	A5SS	ENSMUST00000102494.8	known	0.09	1	10	1	10	n	0.00	0	5	0	5	n	0.06	1	15	1	15	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.09	1	10	1	10	n	0.00	0	13	0	13	n	0.14	3	19	3	19	y	0.13	2	13	2	13	y	0.12	2	14	2	14	y	0.00	0	8	0	8	n	0.17	3	15	3	15	y	ENSMUSG00000037958.14	Nsrp1	chr11	protein_coding	nuclear speckle regulatory protein 1
known_NIR_3361	chr11	77239379	77283876	+	77218322	77283876	A5SS	ENSMUST00000156488.8	known	1.00	3	0	3	0	n	0.33	1	2	1	2	n	0.62	5	3	5	3	n	0.80	8	2	8	2	y	0.78	7	2	7	2	n	0.50	2	2	2	2	n	1.00	17	0	17	0	n	0.86	6	1	6	1	n	0.83	5	1	5	1	n	0.93	13	1	13	1	n	1.00	3	0	3	0	n	1.00	3	0	3	0	n	ENSMUSG00000037926.16	Ssh2	chr11	protein_coding	slingshot protein phosphatase 2
known_NIR_3362	chr11	77299073	77303436	+	77299073	77307241	A3SS	ENSMUST00000037912.12	known	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.09	2	20	2	20	y	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000037926.16	Ssh2	chr11	protein_coding	slingshot protein phosphatase 2
known_NIR_3363	chr11	77299073	77307244	+	77299073	77307241	A3SS	ENSMUST00000037912.12	known	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.13	3	20	3	20	y	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	ENSMUSG00000037926.16	Ssh2	chr11	protein_coding	slingshot protein phosphatase 2
known_NIR_3364	chr11	77353580;77354549	77354482;77354678	+	77353580	77354678	cassetteExon	ENSMUST00000102493.8	known	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0.0	2	0;0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.20	4.0	16	3;5	16	y	0.00	0.0	1	0;0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020836.16	Coro6	chr11	protein_coding	coronin 6
known_NIR_3365	chr11	77360113	77360202	+	77360113	77360205	A3SS	ENSMUST00000102493.8	known	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.55	33	27	33	27	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020836.16	Coro6	chr11	protein_coding	coronin 6
known_NIR_3366	chr11	77403791	77406661	-	77403791	77403986	5pMXE	ENSMUST00000060417.11	known	0.29	2	5	2	5	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.40	2	3	2	3	n	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.20	2	8	2	8	y	0.00	0	6	0	6	n	0.22	2	7	2	7	n	0.17	1	5	1	5	n	ENSMUSG00000044328.14	Trp53i13	chr11	protein_coding	transformation related protein 53 inducible protein 13
known_NIR_3367	chr11	77578637	77582368	+	77577333	77582368	A5SS	ENSMUST00000100802.11	known	0.12	4	29	4	29	y	0.00	0	10	0	10	n	0.00	0	32	0	32	n	0.00	0	26	0	26	n	0.00	0	23	0	23	n	0.00	0	15	0	15	n	0.00	0	28	0	28	n	0.00	0	22	0	22	n	0.11	1	8	1	8	n	0.00	0	37	0	37	n	0.12	2	15	2	15	y	0.00	0	24	0	24	n	ENSMUSG00000037857.17	Nufip2	chr11	protein_coding	nuclear fragile X mental retardation protein interacting protein 2
known_NIR_3368	chr11	77579157	77582368	+	77577333	77582368	A5SS	ENSMUST00000100802.11	known	0.00	0	29	0	29	n	0.00	0	10	0	10	n	0.09	3	32	3	32	y	0.00	0	26	0	26	n	0.12	3	23	3	23	y	0.00	0	15	0	15	n	0.03	1	28	1	28	n	0.00	0	22	0	22	n	0.00	0	8	0	8	n	0.03	1	37	1	37	n	0.06	1	15	1	15	n	0.00	0	24	0	24	n	ENSMUSG00000037857.17	Nufip2	chr11	protein_coding	nuclear fragile X mental retardation protein interacting protein 2
known_NIR_3369	chr11	77656542	77668061	+	77654205	77668061	A5SS	ENSMUST00000108375.9	known	0.00	0	44	0	44	n	0.05	1	18	1	18	n	0.12	8	60	8	60	y	0.05	2	41	2	41	y	0.08	6	72	6	72	y	0.06	2	29	2	29	y	0.04	2	43	2	43	y	0.07	3	38	3	38	y	0.11	2	17	2	17	y	0.00	0	45	0	45	n	0.00	0	20	0	20	n	0.06	2	34	2	34	y	ENSMUSG00000000631.21	Myo18a	chr11	protein_coding	myosin XVIIIA
known_NIR_3370	chr11	77657712	77668061	+	77654205	77668061	A5SS	ENSMUST00000108375.9	known	0.00	0	44	0	44	n	0.00	0	18	0	18	n	0.00	0	60	0	60	n	0.05	2	41	2	41	y	0.00	0	72	0	72	n	0.00	0	29	0	29	n	0.00	0	43	0	43	n	0.00	0	38	0	38	n	0.00	0	17	0	17	n	0.00	0	45	0	45	n	0.00	0	20	0	20	n	0.00	0	34	0	34	n	ENSMUSG00000000631.21	Myo18a	chr11	protein_coding	myosin XVIIIA
known_NIR_3371	chr11	77663051	77668061	+	77654205	77668061	A5SS	ENSMUST00000108375.9	known	0.00	0	44	0	44	n	0.05	1	18	1	18	n	0.00	0	60	0	60	n	0.02	1	41	1	41	n	0.00	0	72	0	72	n	0.00	0	29	0	29	n	0.00	0	43	0	43	n	0.00	0	38	0	38	n	0.06	1	17	1	17	n	0.00	0	45	0	45	n	0.00	0	20	0	20	n	0.06	2	34	2	34	y	ENSMUSG00000000631.21	Myo18a	chr11	protein_coding	myosin XVIIIA
known_NIR_3372	chr11	77669140;77706717	77706682;77708445	+	77669140	77708445	cassetteExon	ENSMUST00000108375.9	known	0.01	0.5	39	0;1	39	n	0.00	0.0	25	0;0	25	n	0.02	1.5	88	2;1	88	n	0.01	0.5	59	0;1	59	n	0.02	2.0	131	3;1	131	n	0.01	0.5	44	0;1	44	n	0.10	5.0	46	2;8	46	y	0.00	0.0	69	0;0	69	n	0.00	0.0	31	0;0	31	n	0.00	0.0	73	0;0	73	n	0.00	0.0	44	0;0	44	n	0.00	0.0	75	0;0	75	n	ENSMUSG00000000631.21	Myo18a	chr11	protein_coding	myosin XVIIIA
known_NIR_3373	chr11	77692206	77708445	+	77669140	77708445	A5SS	ENSMUST00000108375.9	known	0.00	0	39	0	39	n	0.00	0	25	0	25	n	0.00	0	88	0	88	n	0.00	0	59	0	59	n	0.00	0	131	0	131	n	0.00	0	44	0	44	n	0.00	0	46	0	46	n	0.03	2	69	2	69	y	0.00	0	31	0	31	n	0.00	0	73	0	73	n	0.00	0	44	0	44	n	0.00	0	75	0	75	n	ENSMUSG00000000631.21	Myo18a	chr11	protein_coding	myosin XVIIIA
known_NIR_3374	chr11	77712012	77712356	+	77712012	77713489	A3SS	ENSMUST00000108375.9	known	0.76	13	4	13	4	y	0.71	5	2	5	2	n	0.62	20	12	20	12	y	0.48	14	15	14	15	y	0.59	26	18	26	18	y	0.57	12	9	12	9	y	0.74	20	7	20	7	y	0.48	12	13	12	13	y	0.87	13	2	13	2	y	0.67	29	14	29	14	y	0.46	6	7	6	7	y	0.61	11	7	11	7	y	ENSMUSG00000000631.21	Myo18a	chr11	protein_coding	myosin XVIIIA
known_NIR_3375	chr11	77712012	77712356	+	77712012	77714102	A3SS	ENSMUST00000100794.10	known	0.76	13	4	13	4	y	0.56	5	4	5	4	n	0.44	20	25	20	25	y	0.64	14	8	14	8	y	0.46	26	31	26	31	y	0.52	12	11	12	11	y	0.54	20	17	20	17	y	0.41	12	17	12	17	y	0.48	13	14	13	14	y	0.76	29	9	29	9	y	0.55	6	5	6	5	y	0.58	11	8	11	8	y	ENSMUSG00000000631.21	Myo18a	chr11	protein_coding	myosin XVIIIA
known_NIR_3376	chr11	77712012	77714102	+	77712012;77713500	77713489;77714102	ES	ENSMUST00000108375.9	known	0.42	4	5.5	4	4;7	y	0.50	4	4.0	4	2;6	y	0.57	25	19.0	25	12;26	y	0.28	8	21.0	8	15;27	y	0.55	31	25.0	31	18;32	y	0.52	11	10.0	11	9;11	y	0.60	17	11.5	17	7;16	y	0.47	17	19.5	17	13;26	y	0.72	14	5.5	14	2;9	y	0.33	9	18.5	9	14;23	y	0.30	5	11.5	5	7;16	y	0.40	8	12.0	8	7;17	y	ENSMUSG00000000631.21	Myo18a	chr11	protein_coding	myosin XVIIIA
known_NIR_3377	chr11	77744717	77748549	+	77744717;77745548	77745504;77748549	ES	ENSMUST00000108375.9	known	0.51	75	71.5	75	77;66	y	0.53	82	72.5	82	76;69	y	0.40	69	103.5	69	116;91	y	0.48	67	71.5	67	77;66	y	0.51	119	115.0	119	124;106	y	0.43	39	52.0	39	59;45	y	0.35	72	133.5	72	145;122	y	0.54	64	54.0	64	57;51	y	0.46	49	56.5	49	60;53	y	0.46	81	94.0	81	102;86	y	0.66	87	44.0	87	46;42	y	0.56	89	70.5	89	79;62	y	ENSMUSG00000000631.21	Myo18a	chr11	protein_coding	myosin XVIIIA
known_NIR_3378	chr11	77748671	77749845	+	77748671	77755517	A3SS	ENSMUST00000108375.9	known	0.00	0	136	0	136	n	0.00	0	154	0	154	n	0.00	0	194	0	194	n	0.00	0	144	0	144	n	0.00	1	251	1	251	n	0.00	0	122	0	122	n	0.03	6	192	6	192	y	0.00	0	115	0	115	n	0.00	0	112	0	112	n	0.00	0	167	0	167	n	0.00	0	142	0	142	n	0.00	0	154	0	154	n	ENSMUSG00000000631.21	Myo18a	chr11	protein_coding	myosin XVIIIA
known_NIR_3379	chr11	77748671	77755517	+	77748671;77751157	77749845;77755517	ES	ENSMUST00000135375.4	known	1.00	136	0.0	136	0;0	n	1.00	154	0.0	154	0;0	n	1.00	194	0.0	194	0;0	n	1.00	144	0.0	144	0;0	n	1.00	251	0.5	251	1;0	n	1.00	122	0.0	122	0;0	n	0.94	192	13.0	192	6;20	y	1.00	115	0.0	115	0;0	n	1.00	112	0.0	112	0;0	n	1.00	167	0.0	167	0;0	n	1.00	142	0.0	142	0;0	n	1.00	154	0.0	154	0;0	n	ENSMUSG00000000631.21	Myo18a	chr11	protein_coding	myosin XVIIIA
known_NIR_3380	chr11	77751157	77755517	+	77748671	77755517	A5SS	ENSMUST00000108375.9	known	0.00	0	136	0	136	n	0.00	0	154	0	154	n	0.00	0	194	0	194	n	0.00	0	144	0	144	n	0.00	0	251	0	251	n	0.00	0	122	0	122	n	0.09	20	192	20	192	y	0.00	0	115	0	115	n	0.00	0	112	0	112	n	0.00	0	167	0	167	n	0.00	0	142	0	142	n	0.00	0	154	0	154	n	ENSMUSG00000000631.21	Myo18a	chr11	protein_coding	myosin XVIIIA
known_NIR_3381	chr11	77914645	77915787	+	77914645	77915639	A3SS	ENSMUST00000141620.2	known	0.67	31	15	31	15	y	0.80	35	9	35	9	y	0.77	57	17	57	17	y	0.72	33	13	33	13	y	0.76	34	11	34	11	y	0.78	25	7	25	7	y	0.96	54	2	54	2	y	0.64	29	16	29	16	y	0.70	26	11	26	11	y	0.73	38	14	38	14	y	0.76	37	12	37	12	y	0.89	33	4	33	4	y	ENSMUSG00000037791.16	Phf12	chr11	protein_coding	PHD finger protein 12
known_NIR_3382	chr11	77914645;77915693	77915639;77915787	+	77914645	77915787	cassetteExon	ENSMUST00000108360.8	known	0.19	7.5	31	15;0	31	n	0.11	4.5	35	9;0	35	n	0.14	9.0	57	17;1	57	n	0.19	7.5	33	13;2	33	y	0.15	6.0	34	11;1	34	n	0.15	4.5	25	7;2	25	y	0.02	1.0	54	2;0	54	n	0.23	8.5	29	16;1	29	n	0.17	5.5	26	11;0	26	n	0.16	7.0	38	14;0	38	n	0.15	6.5	37	12;1	37	n	0.06	2.0	33	4;0	33	n	ENSMUSG00000037791.16	Phf12	chr11	protein_coding	PHD finger protein 12
known_NIR_3383	chr11	77915912	77916711	+	77915912	77916764	A3SS	ENSMUST00000108360.8	known	1.00	45	0	45	0	n	1.00	38	0	38	0	n	1.00	53	0	53	0	n	0.96	49	2	49	2	y	1.00	61	0	61	0	n	0.87	34	5	34	5	y	1.00	62	0	62	0	n	1.00	31	0	31	0	n	1.00	36	0	36	0	n	1.00	55	0	55	0	n	0.93	41	3	41	3	y	1.00	38	0	38	0	n	ENSMUSG00000037791.16	Phf12	chr11	protein_coding	PHD finger protein 12
known_NIR_3384	chr11	77931157	77940304	+	77928938	77940304	A5SS	ENSMUST00000072289.12	known	0.04	2	49	2	49	y	0.10	4	37	4	37	y	0.15	14	78	14	78	y	0.00	0	49	0	49	n	0.17	16	76	16	76	y	0.15	9	53	9	53	y	0.05	4	71	4	71	y	0.12	5	38	5	38	y	0.08	4	45	4	45	y	0.08	8	93	8	93	y	0.05	2	41	2	41	y	0.07	4	52	4	52	y	ENSMUSG00000061981.15	Flot2	chr11	protein_coding	flotillin 2
known_NIR_3385	chr11	77940385;77944279	77944189;77945611	+	77940385	77945611	cassetteExon	ENSMUST00000072289.12	known	0.07	3.0	37	5;1	37	n	0.15	6.5	37	5;8	37	y	0.18	17.0	76	15;19	76	y	0.11	5.5	45	4;7	45	y	0.13	13.5	87	16;11	87	y	0.22	14.5	51	17;12	51	y	0.10	9.5	82	7;12	82	y	0.19	12.0	51	14;10	51	y	0.15	6.5	36	3;10	36	y	0.13	12.5	83	16;9	83	y	0.04	2.0	47	4;0	47	n	0.11	7.5	58	8;7	58	y	ENSMUSG00000061981.15	Flot2	chr11	protein_coding	flotillin 2
known_NIR_3386	chr11	77940385;77944279	77944189;77946583	+	77940385;77945701	77945611;77946583	MXE	ENSMUST00000072289.12	known	0.06	3.5	54.0	5;2	37;71	y	0.10	6.0	51.5	5;7	37;66	y	0.09	10.5	107.0	15;6	76;138	y	0.05	3.5	66.0	4;3	45;87	y	0.08	10.0	109.0	16;4	87;131	y	0.13	9.5	61.0	17;2	51;71	y	0.06	7.0	105.0	7;7	82;128	y	0.11	8.5	66.0	14;3	51;81	y	0.04	2.0	51.0	3;1	36;66	n	0.10	12.0	105.5	16;8	83;128	y	0.08	4.5	52.5	4;5	47;58	y	0.06	4.5	74.5	8;1	58;91	n	ENSMUSG00000061981.15	Flot2	chr11	protein_coding	flotillin 2
known_NIR_3387	chr11	77944279	77946583	+	77944279;77945701	77945611;77946583	ES	ENSMUST00000148162.9	known	0.05	2	36.0	2	1;71	n	0.16	7	37.0	7	8;66	y	0.07	6	78.5	6	19;138	y	0.06	3	47.0	3	7;87	y	0.05	4	71.0	4	11;131	y	0.05	2	41.5	2	12;71	y	0.09	7	70.0	7	12;128	y	0.06	3	45.5	3	10;81	y	0.03	1	38.0	1	10;66	n	0.10	8	68.5	8	9;128	y	0.15	5	29.0	5	0;58	n	0.02	1	49.0	1	7;91	n	ENSMUSG00000061981.15	Flot2	chr11	protein_coding	flotillin 2
known_NIR_3388	chr11	78034040	78044635	+	78034040	78044523	A3SS	ENSMUST00000073705.12	known	0.53	8	7	8	7	y	0.79	11	3	11	3	y	0.61	11	7	11	7	y	0.45	5	6	5	6	y	0.55	6	5	6	5	y	0.50	8	8	8	8	y	0.55	6	5	6	5	y	0.71	10	4	10	4	y	0.47	7	8	7	8	y	0.63	19	11	19	11	y	0.65	11	6	11	6	y	0.44	7	9	7	9	y	ENSMUSG00000037750.17	Fam222b	chr11	protein_coding	family with sequence similarity 222, member B
known_NIR_3389	chr11	78063956	78067396	-	78063956	78067386	A5SS	ENSMUST00000152611.8	known	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.12	2	14	2	14	y	0.00	0	17	0	17	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.10	1	9	1	9	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	ENSMUSG00000017405.15	Nek8	chr11	protein_coding	NIMA (never in mitosis gene a)-related expressed kinase 8
known_NIR_3390	chr11	78070047	78070196	+	78069882	78070196	A5SS	ENSMUST00000098545.12	known	0.35	27	50	27	50	y	0.18	9	40	9	40	y	0.11	6	48	6	48	y	0.22	12	43	12	43	y	0.25	21	64	21	64	y	0.24	7	22	7	22	y	0.30	23	54	23	54	y	0.17	6	29	6	29	y	0.45	32	39	32	39	y	0.35	41	77	41	77	y	0.37	32	54	32	54	y	0.26	30	85	30	85	y	ENSMUSG00000019437.18	Tlcd1	chr11	protein_coding	TLC domain containing 1
known_NIR_3391	chr11	78092718	78095666	+	78092718;78095023	78094891;78095666	ES	ENSMUST00000078099.4	known	0.57	8	6.0	8	6;6	y	0.69	10	4.5	10	7;2	y	0.25	1	3.0	1	3;3	n	0.55	6	5.0	6	5;5	y	0.48	6	6.5	6	4;9	y	0.60	3	2.0	3	1;3	n	0.51	12	11.5	12	12;11	y	0.25	1	3.0	1	4;2	n	0.40	5	7.5	5	9;6	y	0.58	16	11.5	16	14;9	y	0.51	9	8.5	9	5;12	y	0.53	5	4.5	5	4;5	y	ENSMUSG00000044122.16	Proca1	chr11	protein_coding	protein interacting with cyclin A1
known_NIR_3392	chr11	78092718	78095666	+	78092718;78095576	78094891;78095666	ES	ENSMUST00000124772.3	known	0.73	8	3.0	8	6;0	n	0.74	10	3.5	10	7;0	n	0.33	1	2.0	1	3;1	n	0.71	6	2.5	6	5;0	n	0.75	6	2.0	6	4;0	n	0.86	3	0.5	3	1;0	n	0.63	12	7.0	12	12;2	y	0.33	1	2.0	1	4;0	n	0.53	5	4.5	5	9;0	n	0.70	16	7.0	16	14;0	n	0.78	9	2.5	9	5;0	n	0.71	5	2.0	5	4;0	n	ENSMUSG00000044122.16	Proca1	chr11	protein_coding	protein interacting with cyclin A1
known_NIR_3393	chr11	78095023	78095666	+	78095576	78095666	A5SS	ENSMUST00000124772.3	known	1.00	6	0	6	0	n	1.00	2	0	2	0	n	0.75	3	1	3	1	n	1.00	5	0	5	0	n	1.00	9	0	9	0	n	1.00	3	0	3	0	n	0.85	11	2	11	2	y	1.00	2	0	2	0	n	1.00	6	0	6	0	n	1.00	9	0	9	0	n	1.00	12	0	12	0	n	1.00	5	0	5	0	n	ENSMUSG00000044122.16	Proca1	chr11	protein_coding	protein interacting with cyclin A1
known_NIR_3394	chr11	78095576	78095666	+	78092718	78095666	A5SS	ENSMUST00000060539.13	known	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.50	1	1	1	1	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.14	2	12	2	12	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	ENSMUSG00000044122.16	Proca1	chr11	protein_coding	protein interacting with cyclin A1
known_NIR_3395	chr11	78110916;78111573	78111423;78111947	-	78110916	78111947	cassetteExon	ENSMUST00000002121.5	known	0.00	0.0	31	0;0	31	n	0.00	0.0	27	0;0	27	n	0.01	0.5	68	1;0	68	n	0.05	2.0	37	2;2	37	y	0.04	2.5	54	2;3	54	y	0.00	0.0	26	0;0	26	n	0.00	0.0	53	0;0	53	n	0.09	3.0	29	4;2	29	y	0.07	2.5	33	2;3	33	y	0.01	0.5	54	1;0	54	n	0.01	0.5	33	0;1	33	n	0.05	2.5	47	5;0	47	n	ENSMUSG00000002052.7	Supt6	chr11	protein_coding	SPT6, histone chaperone and transcription elongation factor
known_NIR_3396	chr11	78141371	78141842	+	78136996	78141842	A5SS	ENSMUST00000002133.9	known	0.00	0	198	0	198	n	0.00	1	218	1	218	n	0.02	4	221	4	221	y	0.01	3	234	3	234	y	0.02	4	237	4	237	y	0.00	0	121	0	121	n	0.01	2	213	2	213	y	0.01	1	115	1	115	n	0.01	1	181	1	181	n	0.02	4	229	4	229	y	0.02	3	184	3	184	y	0.00	1	219	1	219	n	ENSMUSG00000002064.11	Sdf2	chr11	protein_coding	stromal cell derived factor 2
known_NIR_3397	chr11	78142038	78145681	+	78142038	78145677	A3SS	ENSMUST00000002133.9	known	0.00	0	171	0	171	n	0.00	0	212	0	212	n	0.00	0	230	0	230	n	0.00	0	198	0	198	n	0.01	2	235	2	235	y	0.00	0	110	0	110	n	0.00	0	267	0	267	n	0.00	0	125	0	125	n	0.00	0	140	0	140	n	0.02	4	248	4	248	y	0.00	0	228	0	228	n	0.02	6	247	6	247	y	ENSMUSG00000002064.11	Sdf2	chr11	protein_coding	stromal cell derived factor 2
known_NIR_3398	chr11	78152743	78153525	+	78153135	78153525	A5SS	ENSMUST00000125459.2	known	1.00	17	0	17	0	n	0.93	14	1	14	1	n	0.95	42	2	42	2	y	0.98	41	1	41	1	n	0.98	65	1	65	1	n	0.97	37	1	37	1	n	1.00	44	0	44	0	n	1.00	48	0	48	0	n	0.95	20	1	20	1	n	0.95	72	4	72	4	y	1.00	32	0	32	0	n	0.92	60	5	60	5	y	ENSMUSG00000010277.8	2610507B11Rik	chr11	protein_coding	RIKEN cDNA 2610507B11 gene
known_NIR_3399	chr11	78158068	78158938	+	78158068	78158925	A3SS	ENSMUST00000010421.7	known	0.00	0	67	0	67	n	0.00	0	44	0	44	n	0.00	0	69	0	69	n	0.00	0	104	0	104	n	0.02	2	117	2	117	y	0.00	0	30	0	30	n	0.00	0	102	0	102	n	0.00	0	51	0	51	n	0.00	0	64	0	64	n	0.00	0	121	0	121	n	0.00	0	64	0	64	n	0.00	0	87	0	87	n	ENSMUSG00000010277.8	2610507B11Rik	chr11	protein_coding	RIKEN cDNA 2610507B11 gene
known_NIR_3400	chr11	78216642	78217088	+	78216642	78216761	3pMXE	ENSMUST00000128032.2	known	0.00	0	62	0	62	n	0.00	0	19	0	19	n	0.11	2	16	2	16	y	0.03	1	29	1	29	n	0.00	0	57	0	57	n	0.00	0	8	0	8	n	0.00	0	53	0	53	n	0.00	0	21	0	21	n	0.00	0	24	0	24	n	0.00	0	72	0	72	n	0.00	0	59	0	59	n	0.00	0	35	0	35	n	ENSMUSG00000017390.16	Aldoc	chr11	protein_coding	aldolase C, fructose-bisphosphate
known_NIR_3401	chr11	78216642	78217088	+	78216642;78216960	78216761;78217088	ES	ENSMUST00000017534.15	known	0.00	0	64.0	0	62;66	n	0.00	0	31.0	0	19;43	n	0.09	2	19.5	2	16;23	y	0.02	1	40.5	1	29;52	n	0.00	0	57.5	0	57;58	n	0.00	0	12.0	0	8;16	n	0.00	0	54.0	0	53;55	n	0.00	0	22.0	0	21;23	n	0.00	0	36.5	0	24;49	n	0.00	0	84.0	0	72;96	n	0.00	0	62.0	0	59;65	n	0.00	0	42.0	0	35;49	n	ENSMUSG00000017390.16	Aldoc	chr11	protein_coding	aldolase C, fructose-bisphosphate
known_NIR_3402	chr11	78239085	78239291	+	78239085	78239357	A3SS	ENSMUST00000002127.14	known	0.00	0	24	0	24	n	0.29	4	10	4	10	y	0.08	3	35	3	35	y	0.17	2	10	2	10	y	0.02	1	40	1	40	n	0.06	2	29	2	29	y	0.03	1	35	1	35	n	0.02	1	40	1	40	n	0.08	1	11	1	11	n	0.03	1	38	1	38	n	0.09	4	39	4	39	y	0.09	2	20	2	20	y	ENSMUSG00000002058.14	Unc119	chr11	protein_coding	unc-119 lipid binding chaperone
known_NIR_3403	chr11	78356831	78357177	+	78356831	78359451	A3SS	ENSMUST00000146431.3	known	1.00	79	0	79	0	n	1.00	88	0	88	0	n	1.00	43	0	43	0	n	0.96	92	4	92	4	y	0.99	106	1	106	1	n	1.00	35	0	35	0	n	0.98	91	2	91	2	y	1.00	54	0	54	0	n	0.99	77	1	77	1	n	0.99	136	1	136	1	n	0.99	86	1	86	1	n	1.00	136	0	136	0	n	ENSMUSG00000020829.10	Slc46a1	chr11	protein_coding	solute carrier family 46, member 1
known_NIR_3404	chr11	78356831	78359451	+	78356831;78358029	78357177;78359451	ES	ENSMUST00000001126.4	known	0.00	0	110.0	0	79;141	n	0.00	0	115.5	0	88;143	n	0.00	0	52.5	0	43;62	n	0.03	4	119.0	4	92;146	y	0.01	1	140.0	1	106;174	n	0.00	0	44.0	0	35;53	n	0.01	2	133.0	2	91;175	y	0.00	0	64.5	0	54;75	n	0.01	1	114.5	1	77;152	n	0.01	1	185.0	1	136;234	n	0.01	1	117.5	1	86;149	n	0.00	0	152.0	0	136;168	n	ENSMUSG00000020829.10	Slc46a1	chr11	protein_coding	solute carrier family 46, member 1
known_NIR_3405	chr11	78358029	78359451	+	78356831	78359451	A5SS	ENSMUST00000146431.3	known	1.00	141	0	141	0	n	1.00	143	0	143	0	n	1.00	62	0	62	0	n	0.97	146	4	146	4	y	0.99	174	1	174	1	n	1.00	53	0	53	0	n	0.99	175	2	175	2	y	1.00	75	0	75	0	n	0.99	152	1	152	1	n	1.00	234	1	234	1	n	0.99	149	1	149	1	n	1.00	168	0	168	0	n	ENSMUSG00000020829.10	Slc46a1	chr11	protein_coding	solute carrier family 46, member 1
known_NIR_3406	chr11	78403631	78404746	+	78403298	78404746	A5SS	ENSMUST00000001127.11	known	0.03	5	191	5	191	y	0.03	5	163	5	163	y	0.00	0	236	0	236	n	0.01	3	235	3	235	y	0.03	7	234	7	234	y	0.02	2	111	2	111	y	0.02	5	241	5	241	y	0.05	6	115	6	115	y	0.03	5	147	5	147	y	0.02	5	253	5	253	y	0.02	4	199	4	199	y	0.02	4	204	4	204	y	ENSMUSG00000001100.11	Poldip2	chr11	protein_coding	polymerase (DNA-directed), delta interacting protein 2
known_NIR_3407	chr11	78410194	78411978	+	78410131	78411978	A5SS	ENSMUST00000001127.11	known	0.05	12	215	12	215	y	0.06	14	215	14	215	y	0.07	17	237	17	237	y	0.00	0	197	0	197	n	0.08	22	264	22	264	y	0.07	9	120	9	120	y	0.00	0	263	0	263	n	0.06	8	120	8	120	y	0.05	10	180	10	180	y	0.00	0	364	0	364	n	0.06	16	257	16	257	y	0.05	16	278	16	278	y	ENSMUSG00000001100.11	Poldip2	chr11	protein_coding	polymerase (DNA-directed), delta interacting protein 2
known_NIR_3408	chr11	78421173	78426912	-	78421173	78426899	A5SS	ENSMUST00000017759.9	known	0.38	8	13	8	13	y	0.58	14	10	14	10	y	0.72	46	18	46	18	y	0.62	25	15	25	15	y	0.62	40	24	40	24	y	0.61	19	12	19	12	y	0.74	20	7	20	7	y	0.37	10	17	10	17	y	0.48	10	11	10	11	y	0.54	26	22	26	22	y	0.52	16	15	16	15	y	0.44	15	19	15	19	y	ENSMUSG00000017615.13	Tnfaip1	chr11	protein_coding	tumor necrosis factor, alpha-induced protein 1 (endothelial)
known_NIR_3409	chr11	78427402	78429660	+	78427402	78429336	A3SS&ES	ENSMUST00000050366.15	known	0.60	162	110	162	110	y	0.62	163	98	163	98	y	0.42	174	237	174	237	y	0.55	131	106	131	106	y	0.54	188	158	188	158	y	0.37	105	181	105	181	y	0.50	157	159	157	159	y	0.47	120	137	120	137	y	0.59	137	97	137	97	y	0.58	212	156	212	156	y	0.56	164	130	164	130	y	0.55	163	131	163	131	y	ENSMUSG00000001105.16	Ift20	chr11	protein_coding	intraflagellar transport 20
known_NIR_3410	chr11	78427402	78429660	+	78427402;78429564	78429336;78429660	ES	ENSMUST00000128788.8	known	0.57	162	122.5	162	110;135	y	0.55	163	135.5	163	98;173	y	0.38	174	281.0	174	237;325	y	0.50	131	128.5	131	106;151	y	0.50	188	190.0	188	158;222	y	0.36	105	186.0	105	181;191	y	0.48	157	173.0	157	159;187	y	0.44	120	155.5	120	137;174	y	0.53	137	122.0	137	97;147	y	0.54	212	180.5	212	156;205	y	0.51	164	160.5	164	130;191	y	0.50	163	162.5	163	131;194	y	ENSMUSG00000001105.16	Ift20	chr11	protein_coding	intraflagellar transport 20
known_NIR_3411	chr11	78429564	78429638	+	78429564	78429660	A3SS	ENSMUST00000128788.8	known	0.06	8	135	8	135	y	0.01	2	173	2	173	y	0.01	3	325	3	325	y	0.03	5	151	5	151	y	0.01	3	222	3	222	y	0.04	7	191	7	191	y	0.03	6	187	6	187	y	0.00	0	174	0	174	n	0.03	4	147	4	147	y	0.02	5	205	5	205	y	0.01	2	191	2	191	y	0.01	2	194	2	194	y	ENSMUSG00000001105.16	Ift20	chr11	protein_coding	intraflagellar transport 20
known_NIR_3412	chr11	78858859	78862143	-	78858859	78860540	5pMXE	ENSMUST00000140073.2	known	0.93	1052	85	1052	85	y	0.90	791	86	791	86	y	0.90	1258	143	1258	143	y	0.90	1042	117	1042	117	y	0.92	1353	115	1353	115	y	0.92	725	62	725	62	y	0.90	1137	120	1137	120	y	0.92	701	62	701	62	y	0.89	847	108	847	108	y	0.89	1219	152	1219	152	y	0.89	967	118	967	118	y	0.91	1243	116	1243	116	y	ENSMUSG00000001123.16	Lgals9	chr11	protein_coding	lectin, galactose binding, soluble 9
known_NIR_3413	chr11	78858859;78860632	78860540;78862143	-	78858859	78862143	cassetteExon	ENSMUST00000108268.10	known	0.07	85.0	1052	85;85	1052	y	0.08	71.0	791	86;56	791	y	0.09	123.5	1258	143;104	1258	y	0.09	105.5	1042	117;94	1042	y	0.08	112.5	1353	115;110	1353	y	0.08	61.5	725	62;61	725	y	0.08	103.5	1137	120;87	1137	y	0.10	74.0	701	62;86	701	y	0.10	99.0	847	108;90	847	y	0.10	132.0	1219	152;112	1219	y	0.09	97.5	967	118;77	967	y	0.08	114.5	1243	116;113	1243	y	ENSMUSG00000001123.16	Lgals9	chr11	protein_coding	lectin, galactose binding, soluble 9
known_NIR_3414	chr11	79132982	79133325	-	79132982	79134226	A5SS	ENSMUST00000131818.8	known	0.84	27	5	27	5	y	0.81	13	3	13	3	y	0.68	15	7	15	7	y	0.74	14	5	14	5	y	0.83	29	6	29	6	y	0.64	9	5	9	5	y	0.83	30	6	30	6	y	0.85	11	2	11	2	y	0.82	14	3	14	3	y	0.83	10	2	10	2	y	1.00	9	0	9	0	n	0.78	28	8	28	8	y	ENSMUSG00000017677.12	Wsb1	chr11	protein_coding	WD repeat and SOCS box-containing 1
known_NIR_3415	chr11	79132982	79133325	-	79132982	79135289	A5SS	ENSMUST00000017821.12	known	0.48	27	29	27	29	y	0.37	13	22	13	22	y	0.20	15	61	15	61	y	0.42	14	19	14	19	y	0.50	29	29	29	29	y	0.53	9	8	9	8	y	0.52	30	28	30	28	y	0.37	11	19	11	19	y	0.40	14	21	14	21	y	0.28	10	26	10	26	y	0.33	9	18	9	18	y	0.27	28	77	28	77	y	ENSMUSG00000017677.12	Wsb1	chr11	protein_coding	WD repeat and SOCS box-containing 1
known_NIR_3416	chr11	79132982	79135289	-	79134401	79135289	3pMXE	ENSMUST00000145772.8	known	0.29	29	71	29	71	y	0.38	22	36	22	36	y	0.48	61	66	61	66	y	0.38	19	31	19	31	y	0.26	29	84	29	84	y	0.17	8	40	8	40	y	0.25	28	82	28	82	y	0.31	19	42	19	42	y	0.40	21	32	21	32	y	0.47	26	29	26	29	y	0.40	18	27	18	27	y	0.52	77	70	77	70	y	ENSMUSG00000017677.12	Wsb1	chr11	protein_coding	WD repeat and SOCS box-containing 1
known_NIR_3417	chr11	79132982;79134401	79134226;79135289	-	79132982	79135289	cassetteExon	ENSMUST00000017821.12	known	0.57	38.0	29	5;71	29	y	0.47	19.5	22	3;36	22	y	0.37	36.5	61	7;66	61	y	0.49	18.0	19	5;31	19	y	0.61	45.0	29	6;84	29	y	0.74	22.5	8	5;40	8	y	0.61	44.0	28	6;82	28	y	0.54	22.0	19	2;42	19	y	0.45	17.5	21	3;32	21	y	0.37	15.5	26	2;29	26	y	0.43	13.5	18	0;27	18	n	0.34	39.0	77	8;70	77	y	ENSMUSG00000017677.12	Wsb1	chr11	protein_coding	WD repeat and SOCS box-containing 1
known_NIR_3418	chr11	79137127	79141807	-	79137127	79139217	5pMXE	ENSMUST00000131818.8	known	0.00	0	115	0	115	n	0.00	0	74	0	74	n	0.00	0	220	0	220	n	0.00	0	92	0	92	n	0.01	2	145	2	145	y	0.00	0	65	0	65	n	0.00	0	145	0	145	n	0.00	0	97	0	97	n	0.00	0	71	0	71	n	0.00	0	85	0	85	n	0.00	0	53	0	53	n	0.00	0	207	0	207	n	ENSMUSG00000017677.12	Wsb1	chr11	protein_coding	WD repeat and SOCS box-containing 1
known_NIR_3419	chr11	79137127	79141807	-	79137127;79139485	79139217;79141807	ES	ENSMUST00000017821.12	known	0.00	0	105.0	0	115;95	n	0.00	0	82.0	0	74;90	n	0.00	0	212.0	0	220;204	n	0.00	0	89.0	0	92;86	n	0.01	2	140.0	2	145;135	y	0.00	0	55.0	0	65;45	n	0.00	0	128.5	0	145;112	n	0.00	0	100.0	0	97;103	n	0.00	0	74.5	0	71;78	n	0.00	0	78.5	0	85;72	n	0.00	0	48.5	0	53;44	n	0.00	0	208.5	0	207;210	n	ENSMUSG00000017677.12	Wsb1	chr11	protein_coding	WD repeat and SOCS box-containing 1
known_NIR_3420	chr11	79150248	79164603	-	79150248	79164488	A5SS	ENSMUST00000208339.2	known	0.44	7	9	7	9	y	0.67	10	5	10	5	y	0.67	20	10	20	10	y	0.53	8	7	8	7	y	0.58	19	14	19	14	y	0.36	4	7	4	7	y	0.59	24	17	24	17	y	0.32	11	23	11	23	y	0.61	11	7	11	7	y	0.64	18	10	18	10	y	0.83	10	2	10	2	y	0.67	26	13	26	13	y	ENSMUSG00000108822.2	Gm44787	chr11	lncRNA	predicted gene 44787
known_NIR_3421	chr11	79230885	79275001	+	79230885	79235659	3pMXE	ENSMUST00000145839.2	known	0.00	0	1	0	1	n	0.50	2	2	2	2	n	0.05	1	19	1	19	n	0.60	3	2	3	2	n	0.55	6	5	6	5	y	0.29	2	5	2	5	n	0.43	3	4	3	4	n	1.00	3	0	3	0	n	0.00	0	3	0	3	n	0.50	2	2	2	2	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	ENSMUSG00000020716.17	Nf1	chr11	protein_coding	neurofibromin 1
known_NIR_3422	chr11	79349732;79354121	79354059;79359543	+	79349732	79359543	cassetteExon	ENSMUST00000108251.9	known	1.00	1.0	0	0;2	0	n	0.50	1.0	1	0;2	1	n	0.92	12.0	1	11;13	1	n	1.00	3.5	0	3;4	0	n	1.00	2.0	0	3;1	0	n	0.67	4.0	2	4;4	2	y	0.47	3.5	4	4;3	4	y	0.75	3.0	1	4;2	1	n	0.71	2.5	1	1;4	1	n	1.00	5.0	0	4;6	0	n	0.33	1.0	2	2;0	2	n	0.47	3.5	4	3;4	4	y	ENSMUSG00000020716.17	Nf1	chr11	protein_coding	neurofibromin 1
known_NIR_3423	chr11	79455772	79456244	+	79455772	79456247	A3SS	ENSMUST00000108251.9	known	0.73	11	4	11	4	y	0.80	8	2	8	2	y	0.81	21	5	21	5	y	0.71	10	4	10	4	y	0.92	24	2	24	2	y	1.00	15	0	15	0	n	0.71	20	8	20	8	y	0.92	11	1	11	1	n	0.87	13	2	13	2	y	0.91	21	2	21	2	y	1.00	9	0	9	0	n	0.88	23	3	23	3	y	ENSMUSG00000020716.17	Nf1	chr11	protein_coding	neurofibromin 1
known_NIR_3424	chr11	79886635	79898339	+	79886635	79889883	3pMXE	ENSMUST00000132312.8	known	0.05	1	20	1	20	n	0.07	1	13	1	13	n	0.29	13	32	13	32	y	0.14	3	18	3	18	y	0.11	3	24	3	24	y	0.15	2	11	2	11	y	0.15	3	17	3	17	y	0.28	5	13	5	13	y	0.18	4	18	4	18	y	0.14	3	18	3	18	y	0.31	4	9	4	9	y	0.31	13	29	13	29	y	ENSMUSG00000017548.16	Suz12	chr11	protein_coding	SUZ12 polycomb repressive complex 2 subunit
known_NIR_3425	chr11	79886635;79889951	79889883;79898339	+	79886635	79898339	cassetteExon	ENSMUST00000163272.2	known	0.96	23.0	1	20;26	1	n	0.93	13.5	1	13;14	1	n	0.73	36.0	13	32;40	13	y	0.89	23.5	3	18;29	3	y	0.90	28.5	3	24;33	3	y	0.88	14.5	2	11;18	2	y	0.86	18.0	3	17;19	3	y	0.69	11.0	5	13;9	5	y	0.80	16.0	4	18;14	4	y	0.87	19.5	3	18;21	3	y	0.71	10.0	4	9;11	4	y	0.71	32.5	13	29;36	13	y	ENSMUSG00000017548.16	Suz12	chr11	protein_coding	SUZ12 polycomb repressive complex 2 subunit
known_NIR_3426	chr11	79916137	79919974	+	79916137;79916780	79916623;79919974	ES	ENSMUST00000163272.2	known	0.00	0	38.0	0	31;45	n	0.06	2	33.5	2	24;43	y	0.00	0	66.0	0	63;69	n	0.00	0	46.0	0	47;45	n	0.00	0	61.0	0	61;61	n	0.00	0	25.5	0	21;30	n	0.00	0	44.0	0	39;49	n	0.00	0	37.5	0	34;41	n	0.00	0	38.0	0	38;38	n	0.00	0	51.0	0	45;57	n	0.00	0	32.5	0	28;37	n	0.00	0	50.0	0	39;61	n	ENSMUSG00000017548.16	Suz12	chr11	protein_coding	SUZ12 polycomb repressive complex 2 subunit
known_NIR_3427	chr11	79938563;79939530	79939418;79947278	-	79938563	79947278	cassetteExon	ENSMUST00000103233.10	known	1.00	20.0	0	28;12	0	n	1.00	21.5	0	23;20	0	n	0.94	17.0	1	13;21	1	n	1.00	17.0	0	18;16	0	n	0.91	20.0	2	19;21	2	y	0.87	6.5	1	7;6	1	n	1.00	17.5	0	21;14	0	n	1.00	21.0	0	28;14	0	n	1.00	11.0	0	15;7	0	n	0.96	23.0	1	25;21	1	n	1.00	14.0	0	13;15	0	n	0.96	24.5	1	34;15	1	n	ENSMUSG00000017561.17	Crlf3	chr11	protein_coding	cytokine receptor-like factor 3
known_NIR_3428	chr11	79955225	79971614	-	79955225	79971610	A5SS	ENSMUST00000103233.10	known	0.12	1	7	1	7	n	0.09	1	10	1	10	n	0.27	3	8	3	8	y	0.20	2	8	2	8	y	0.08	1	12	1	12	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.50	2	2	2	2	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	ENSMUSG00000017561.17	Crlf3	chr11	protein_coding	cytokine receptor-like factor 3
known_NIR_3429	chr11	80031396	80032903	-	80031149	80032903	A3SS	ENSMUST00000050207.10	known	0.07	2	26	2	26	y	0.06	2	30	2	30	y	0.40	10	15	10	15	y	0.03	1	33	1	33	n	0.09	4	40	4	40	y	0.08	1	11	1	11	n	0.23	8	27	8	27	y	0.24	4	13	4	13	y	0.14	4	25	4	25	y	0.08	5	60	5	60	y	0.11	4	32	4	32	y	0.11	4	31	4	31	y	ENSMUSG00000046909.10	Tefm	chr11	protein_coding	transcription elongation factor, mitochondrial
known_NIR_3430	chr11	80051068	80056499	+	80051068;80053086	80052974;80056499	ES	ENSMUST00000021050.14	known	0.00	0	48.0	0	58;38	n	0.00	0	36.0	0	40;32	n	0.04	1	23.5	1	33;14	n	0.06	4	65.5	4	63;68	y	0.00	0	88.5	0	107;70	n	0.00	0	21.0	0	28;14	n	0.03	2	62.0	2	69;55	y	0.00	0	31.5	0	35;28	n	0.00	0	39.0	0	40;38	n	0.04	3	80.5	3	92;69	y	0.00	0	62.5	0	64;61	n	0.00	0	72.5	0	83;62	n	ENSMUSG00000020709.16	Adap2	chr11	protein_coding	ArfGAP with dual PH domains 2
known_NIR_3431	chr11	80080193	80080682	+	80080193	80084712	A3SS	ENSMUST00000017839.3	known	0.12	3	23	3	23	y	0.12	3	21	3	21	y	0.00	0	27	0	27	n	0.00	0	22	0	22	n	0.00	0	34	0	34	n	0.00	0	11	0	11	n	0.09	1	10	1	10	n	0.00	0	21	0	21	n	0.00	0	9	0	9	n	0.09	2	20	2	20	y	0.00	0	15	0	15	n	0.04	1	23	1	23	n	ENSMUSG00000020707.7	Rnf135	chr11	protein_coding	ring finger protein 135
known_NIR_3432	chr11	80116942	80124208	+	80116942;80118158	80118106;80124208	ES	ENSMUST00000077451.14	known	0.00	0	39.5	0	44;35	n	0.00	0	15.5	0	12;19	n	0.04	2	50.0	2	42;58	y	0.00	0	48.0	0	42;54	n	0.03	2	70.5	2	67;74	y	0.00	0	23.5	0	18;29	n	0.00	0	55.0	0	54;56	n	0.00	0	30.5	0	27;34	n	0.00	0	39.5	0	39;40	n	0.00	0	47.0	0	45;49	n	0.00	0	25.0	0	27;23	n	0.00	0	43.0	0	35;51	n	ENSMUSG00000017686.18	Rhot1	chr11	protein_coding	ras homolog family member T1
known_NIR_3433	chr11	80133507	80134228	+	80133507	80134196	A3SS	ENSMUST00000077451.14	known	0.15	6	33	6	33	y	0.15	5	28	5	28	y	0.02	1	43	1	43	n	0.03	2	56	2	56	y	0.09	6	59	6	59	y	0.04	1	26	1	26	n	0.06	3	48	3	48	y	0.00	0	30	0	30	n	0.00	0	37	0	37	n	0.00	0	57	0	57	n	0.00	0	34	0	34	n	0.04	2	44	2	44	y	ENSMUSG00000017686.18	Rhot1	chr11	protein_coding	ras homolog family member T1
known_NIR_3434	chr11	80145688	80148340	+	80145688;80146783	80146688;80148340	ES	ENSMUST00000077451.14	known	0.29	5	12.0	5	22;2	y	0.33	4	8.0	4	15;1	n	0.49	12	12.5	12	20;5	y	0.28	7	18.0	7	31;5	y	0.48	20	21.5	20	33;10	y	0.21	2	7.5	2	12;3	y	0.46	14	16.5	14	25;8	y	0.44	8	10.0	8	17;3	y	0.39	7	11.0	7	16;6	y	0.42	13	18.0	13	34;2	y	0.38	9	14.5	9	23;6	y	0.61	20	13.0	20	24;2	y	ENSMUSG00000017686.18	Rhot1	chr11	protein_coding	ras homolog family member T1
known_NIR_3435	chr11	80145688	80156568	+	80145688;80148462	80148340;80156568	ES	ENSMUST00000055056.16	known	0.92	60	5.0	60	5;5	y	0.90	45	5.0	45	4;6	y	0.78	50	14.0	50	12;16	y	0.83	49	10.0	49	7;13	y	0.75	57	18.5	57	20;17	y	0.81	29	7.0	29	2;12	y	0.79	70	19.0	70	14;24	y	0.89	56	7.0	56	8;6	y	0.79	30	8.0	30	7;9	y	0.86	76	12.5	76	13;12	y	0.82	52	11.5	52	9;14	y	0.69	50	22.0	50	20;24	y	ENSMUSG00000017686.18	Rhot1	chr11	protein_coding	ras homolog family member T1
known_NIR_3436	chr11	80145688;80146783	80146688;80156568	+	80145688	80156568	cassetteExon	ENSMUST00000092857.13	known	0.25	20.5	60	22;19	60	y	0.28	17.5	45	15;20	45	y	0.26	18.0	50	20;16	50	y	0.31	22.0	49	31;13	49	y	0.33	28.5	57	33;24	57	y	0.30	12.5	29	12;13	29	y	0.24	22.5	70	25;20	70	y	0.21	14.5	56	17;12	56	y	0.33	14.5	30	16;13	30	y	0.24	24.0	76	34;14	76	y	0.26	18.0	52	23;13	52	y	0.29	20.0	50	24;16	50	y	ENSMUSG00000017686.18	Rhot1	chr11	protein_coding	ras homolog family member T1
known_NIR_3437	chr11	80145688;80146783	80146688;80156568	+	80145688;80148462	80148340;80156568	MXE	ENSMUST00000055056.16	known	0.80	20.5	5.0	22;19	5;5	y	0.78	17.5	5.0	15;20	4;6	y	0.56	18.0	14.0	20;16	12;16	y	0.69	22.0	10.0	31;13	7;13	y	0.61	28.5	18.5	33;24	20;17	y	0.64	12.5	7.0	12;13	2;12	y	0.54	22.5	19.0	25;20	14;24	y	0.67	14.5	7.0	17;12	8;6	y	0.64	14.5	8.0	16;13	7;9	y	0.66	24.0	12.5	34;14	13;12	y	0.61	18.0	11.5	23;13	9;14	y	0.48	20.0	22.0	24;16	20;24	y	ENSMUSG00000017686.18	Rhot1	chr11	protein_coding	ras homolog family member T1
known_NIR_3438	chr11	80146783	80156568	+	80146783;80148462	80148340;80156568	ES	ENSMUST00000077451.14	known	0.84	19	3.5	19	2;5	y	0.85	20	3.5	20	1;6	n	0.60	16	10.5	16	5;16	y	0.59	13	9.0	13	5;13	y	0.64	24	13.5	24	10;17	y	0.63	13	7.5	13	3;12	y	0.56	20	16.0	20	8;24	y	0.73	12	4.5	12	3;6	y	0.63	13	7.5	13	6;9	y	0.67	14	7.0	14	2;12	y	0.57	13	10.0	13	6;14	y	0.55	16	13.0	16	2;24	y	ENSMUSG00000017686.18	Rhot1	chr11	protein_coding	ras homolog family member T1
known_NIR_3439	chr11	80148462	80156568	+	80155213	80156568	5pMXE	ENSMUST00000236882.2	known	1.00	5	0	5	0	n	1.00	6	0	6	0	n	1.00	16	0	16	0	n	1.00	13	0	13	0	n	0.85	17	3	17	3	y	1.00	12	0	12	0	n	0.75	24	8	24	8	y	1.00	6	0	6	0	n	1.00	9	0	9	0	n	1.00	12	0	12	0	n	1.00	14	0	14	0	n	1.00	24	0	24	0	n	ENSMUSG00000017686.18	Rhot1	chr11	protein_coding	ras homolog family member T1
known_NIR_3440	chr11	80155213	80156568	+	80145688	80156568	A5SS	ENSMUST00000092857.13	known	0.00	0	60	0	60	n	0.00	0	45	0	45	n	0.00	0	50	0	50	n	0.00	0	49	0	49	n	0.05	3	57	3	57	y	0.00	0	29	0	29	n	0.10	8	70	8	70	y	0.00	0	56	0	56	n	0.00	0	30	0	30	n	0.00	0	76	0	76	n	0.00	0	52	0	52	n	0.00	0	50	0	50	n	ENSMUSG00000017686.18	Rhot1	chr11	protein_coding	ras homolog family member T1
known_NIR_3441	chr11	80155213	80156568	+	80146783	80156568	A5SS	ENSMUST00000017831.16	known	0.00	0	19	0	19	n	0.00	0	20	0	20	n	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.11	3	24	3	24	y	0.00	0	13	0	13	n	0.29	8	20	8	20	y	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.00	0	16	0	16	n	ENSMUSG00000017686.18	Rhot1	chr11	protein_coding	ras homolog family member T1
known_NIR_3442	chr11	80280156;80280647	80280600;80282157	+	80280156	80282157	cassetteExon	ENSMUST00000165565.8	known	0.94	78.5	5	79;78	5	y	1.00	74.5	0	75;74	0	n	1.00	114.5	0	123;106	0	n	0.98	94.0	2	100;88	2	y	1.00	146.0	0	154;138	0	n	1.00	76.5	0	78;75	0	n	1.00	104.0	0	103;105	0	n	1.00	77.5	0	79;76	0	n	1.00	83.5	0	83;84	0	n	1.00	113.5	0	120;107	0	n	0.99	72.0	1	76;68	1	n	1.00	106.5	0	124;89	0	n	ENSMUSG00000017421.19	Zfp207	chr11	protein_coding	zinc finger protein 207
known_NIR_3443	chr11	80282818	80285112	+	80282818	80283910	3pMXE	ENSMUST00000108216.8	known	0.93	107	8	107	8	y	0.94	94	6	94	6	y	0.87	160	23	160	23	y	0.92	113	10	113	10	y	0.96	176	8	176	8	y	0.88	108	15	108	15	y	0.91	149	15	149	15	y	0.88	87	12	87	12	y	0.95	97	5	97	5	y	0.95	175	9	175	9	y	0.92	117	10	117	10	y	0.95	152	8	152	8	y	ENSMUSG00000017421.19	Zfp207	chr11	protein_coding	zinc finger protein 207
known_NIR_3444	chr11	80282818	80285112	+	80282818;80284002	80283910;80285112	ES	ENSMUST00000165565.8	known	0.94	107	7.0	107	8;6	y	0.94	94	6.5	94	6;7	y	0.85	160	27.5	160	23;32	y	0.93	113	8.5	113	10;7	y	0.95	176	9.0	176	8;10	y	0.89	108	14.0	108	15;13	y	0.89	149	18.5	149	15;22	y	0.87	87	12.5	87	12;13	y	0.94	97	6.0	97	5;7	y	0.94	175	10.5	175	9;12	y	0.91	117	12.0	117	10;14	y	0.93	152	11.0	152	8;14	y	ENSMUSG00000017421.19	Zfp207	chr11	protein_coding	zinc finger protein 207
known_NIR_3445	chr11	80289296	80293475	+	80289296	80293472	A3SS	ENSMUST00000178665.8	known	0.29	2	5	2	5	n	0.50	3	3	3	3	n	0.50	1	1	1	1	n	0.33	3	6	3	6	n	0.47	7	8	7	8	y	0.00	0	3	0	3	n	0.12	1	7	1	7	n	0.75	6	2	6	2	n	0.41	7	10	7	10	y	0.25	2	6	2	6	n	0.25	3	9	3	9	y	0.22	2	7	2	7	n	ENSMUSG00000017421.19	Zfp207	chr11	protein_coding	zinc finger protein 207
known_NIR_3446	chr11	80320767	80322531	+	80319581	80322531	A5SS	ENSMUST00000172641.2	known	0.02	4	179	4	179	y	0.01	1	100	1	100	n	0.00	0	220	0	220	n	0.00	0	256	0	256	n	0.00	0	301	0	301	n	0.00	0	139	0	139	n	0.00	0	235	0	235	n	0.01	1	137	1	137	n	0.00	0	190	0	190	n	0.00	1	250	1	250	n	0.01	2	164	2	164	y	0.00	0	210	0	210	n	ENSMUSG00000017428.17	Psmd11	chr11	protein_coding	proteasome (prosome, macropain) 26S subunit, non-ATPase, 11
known_NIR_3447	chr11	80322632	80336068	+	80322632	80329077	A3SS&ES	ENSMUST00000172773.8	known	0.00	0	194	0	194	n	0.00	0	120	0	120	n	0.00	0	248	0	248	n	0.01	2	210	2	210	y	0.00	0	307	0	307	n	0.00	0	117	0	117	n	0.00	0	279	0	279	n	0.00	0	132	0	132	n	0.00	0	183	0	183	n	0.00	0	262	0	262	n	0.00	0	199	0	199	n	0.00	0	258	0	258	n	ENSMUSG00000017428.17	Psmd11	chr11	protein_coding	proteasome (prosome, macropain) 26S subunit, non-ATPase, 11
known_NIR_3448	chr11	80322632	80336068	+	80322632;80329201	80329077;80336068	ES	ENSMUST00000173938.8	known	0.00	0	186.0	0	194;178	n	0.00	0	125.5	0	120;131	n	0.00	0	252.5	0	248;257	n	0.01	2	234.5	2	210;259	y	0.00	0	309.5	0	307;312	n	0.00	0	123.5	0	117;130	n	0.00	0	278.5	0	279;278	n	0.00	0	131.5	0	132;131	n	0.00	0	173.0	0	183;163	n	0.00	0	266.0	0	262;270	n	0.00	0	180.0	0	199;161	n	0.00	0	253.0	0	258;248	n	ENSMUSG00000017428.17	Psmd11	chr11	protein_coding	proteasome (prosome, macropain) 26S subunit, non-ATPase, 11
known_NIR_3449	chr11	80322632;80325406	80325344;80329077	+	80322632	80329077	cassetteExon	ENSMUST00000173938.8	known	0.00	0.0	194	0;0	194	n	0.00	0.5	120	0;1	120	n	0.00	0.0	248	0;0	248	n	0.00	0.0	210	0;0	210	n	0.01	2.0	307	2;2	307	y	0.00	0.5	117	1;0	117	n	0.00	0.0	279	0;0	279	n	0.00	0.0	132	0;0	132	n	0.00	0.0	183	0;0	183	n	0.00	0.0	262	0;0	262	n	0.00	0.0	199	0;0	199	n	0.01	1.5	258	2;1	258	n	ENSMUSG00000017428.17	Psmd11	chr11	protein_coding	proteasome (prosome, macropain) 26S subunit, non-ATPase, 11
known_NIR_3450	chr11	80322632;80329456	80329077;80336068	+	80322632	80336068	cassetteExon	ENSMUST00000174743.8	known	1.00	100.5	0	194;7	0	n	1.00	62.5	0	120;5	0	n	1.00	129.0	0	248;10	0	n	0.98	107.5	2	210;5	2	y	1.00	162.0	0	307;17	0	n	1.00	60.0	0	117;3	0	n	1.00	141.5	0	279;4	0	n	1.00	67.0	0	132;2	0	n	1.00	93.0	0	183;3	0	n	1.00	136.0	0	262;10	0	n	1.00	100.5	0	199;2	0	n	1.00	131.0	0	258;4	0	n	ENSMUSG00000017428.17	Psmd11	chr11	protein_coding	proteasome (prosome, macropain) 26S subunit, non-ATPase, 11
known_NIR_3451	chr11	80329201;80329456	80329347;80336068	+	80329201	80336068	cassetteExon	ENSMUST00000173938.8	known	0.03	5.5	178	4;7	178	y	0.03	4.0	131	3;5	131	y	0.03	9.0	257	8;10	257	y	0.03	8.5	259	12;5	259	y	0.04	13.5	312	10;17	312	y	0.02	2.5	130	2;3	130	y	0.01	4.0	278	4;4	278	y	0.02	2.5	131	3;2	131	y	0.02	4.0	163	5;3	163	y	0.03	8.5	270	7;10	270	y	0.01	1.0	161	0;2	161	n	0.02	5.5	248	7;4	248	y	ENSMUSG00000017428.17	Psmd11	chr11	protein_coding	proteasome (prosome, macropain) 26S subunit, non-ATPase, 11
known_NIR_3452	chr11	80362420	80363919	+	80362420	80362536	A3SS	ENSMUST00000017572.14	known	0.00	0	296	0	296	n	0.00	0	280	0	280	n	0.01	2	332	2	332	y	0.01	2	279	2	279	y	0.00	0	382	0	382	n	0.00	0	160	0	160	n	0.00	0	412	0	412	n	0.00	0	145	0	145	n	0.00	0	291	0	291	n	0.02	8	329	8	329	y	0.00	0	308	0	308	n	0.00	0	339	0	339	n	ENSMUSG00000017428.17	Psmd11	chr11	protein_coding	proteasome (prosome, macropain) 26S subunit, non-ATPase, 11
known_NIR_3453	chr11	82672098	82674172	+	82672102	82674172	A5SS	ENSMUST00000092849.12	known	0.14	1	6	1	6	n	0.50	4	4	4	4	n	0.32	8	17	8	17	y	0.36	5	9	5	9	y	0.15	3	17	3	17	y	0.21	4	15	4	15	y	0.25	4	12	4	12	y	0.41	7	10	7	10	y	0.10	1	9	1	9	n	0.33	6	12	6	12	y	0.00	0	10	0	10	n	0.47	7	8	7	8	y	ENSMUSG00000020697.17	Lig3	chr11	protein_coding	ligase III, DNA, ATP-dependent
known_NIR_3454	chr11	82676284	82678457	+	82676284	82678454	A3SS	ENSMUST00000092849.12	known	0.27	3	8	3	8	y	0.56	10	8	10	8	y	0.31	15	34	15	34	y	0.27	8	22	8	22	y	0.36	12	21	12	21	y	0.45	10	12	10	12	y	0.38	12	20	12	20	y	0.13	4	26	4	26	y	0.33	6	12	6	12	y	0.43	13	17	13	17	y	0.21	3	11	3	11	y	0.36	8	14	8	14	y	ENSMUSG00000020697.17	Lig3	chr11	protein_coding	ligase III, DNA, ATP-dependent
known_NIR_3455	chr11	82691123	82691325	+	82691123	82692107	A3SS	ENSMUST00000092849.12	known	0.02	1	44	1	44	n	0.00	0	29	0	29	n	0.02	1	47	1	47	n	0.00	0	38	0	38	n	0.05	3	55	3	55	y	0.00	0	43	0	43	n	0.00	0	39	0	39	n	0.00	0	26	0	26	n	0.03	1	37	1	37	n	0.00	0	29	0	29	n	0.03	1	32	1	32	n	0.00	0	34	0	34	n	ENSMUSG00000020697.17	Lig3	chr11	protein_coding	ligase III, DNA, ATP-dependent
known_NIR_3456	chr11	82698363	82699339	-	82697015	82699339	A3SS	ENSMUST00000074515.11	known	0.03	1	38	1	38	n	0.00	0	54	0	54	n	0.00	0	87	0	87	n	0.00	0	51	0	51	n	0.00	0	56	0	56	n	0.00	0	34	0	34	n	0.04	2	49	2	49	y	0.02	1	47	1	47	n	0.00	0	40	0	40	n	0.10	5	45	5	45	y	0.00	0	38	0	38	n	0.04	2	54	2	54	y	ENSMUSG00000020696.19	Rffl	chr11	protein_coding	ring finger and FYVE like domain containing protein
known_NIR_3457	chr11	82701044	82703226	-	82701044;82701937	82701854;82703226	ES	ENSMUST00000074515.11	known	0.04	1	25.0	1	32;18	n	0.03	1	35.0	1	40;30	n	0.16	12	62.5	12	65;60	y	0.04	2	46.5	2	53;40	y	0.04	3	68.0	3	77;59	y	0.00	0	29.0	0	36;22	n	0.04	2	49.0	2	55;43	y	0.03	1	39.0	1	46;32	n	0.02	1	44.0	1	46;42	n	0.05	3	56.5	3	68;45	y	0.00	0	34.0	0	43;25	n	0.12	4	30.5	4	36;25	y	ENSMUSG00000020696.19	Rffl	chr11	protein_coding	ring finger and FYVE like domain containing protein
known_NIR_3458	chr11	82709429	82724907	-	82709429	82761834	A5SS	ENSMUST00000108173.10	known	0.22	2	7	2	7	n	0.00	0	7	0	7	n	0.11	4	31	4	31	y	0.07	1	14	1	14	n	0.11	3	24	3	24	y	0.05	1	18	1	18	n	0.11	2	17	2	17	y	0.00	0	14	0	14	n	0.08	1	12	1	12	n	0.06	1	16	1	16	n	0.00	0	11	0	11	n	0.09	1	10	1	10	n	ENSMUSG00000020696.19	Rffl	chr11	protein_coding	ring finger and FYVE like domain containing protein
known_NIR_3459	chr11	82709429	82736578	-	82709429	82724907	A5SS&ES	ENSMUST00000093975.12	known	0.78	7	2	7	2	n	1.00	6	0	6	0	n	0.79	15	4	15	4	y	0.90	9	1	9	1	n	0.77	10	3	10	3	y	0.83	5	1	5	1	n	0.80	8	2	8	2	y	1.00	4	0	4	0	n	0.80	4	1	4	1	n	0.83	5	1	5	1	n	1.00	7	0	7	0	n	0.90	9	1	9	1	n	ENSMUSG00000020696.19	Rffl	chr11	protein_coding	ring finger and FYVE like domain containing protein
known_NIR_3460	chr11	82709429	82761834	-	82709429	82736578	5pMXE	ENSMUST00000126660.2	known	0.50	7	7	7	7	y	0.54	7	6	7	6	y	0.67	31	15	31	15	y	0.61	14	9	14	9	y	0.71	24	10	24	10	y	0.78	18	5	18	5	y	0.68	17	8	17	8	y	0.78	14	4	14	4	y	0.75	12	4	12	4	y	0.76	16	5	16	5	y	0.61	11	7	11	7	y	0.53	10	9	10	9	y	ENSMUSG00000020696.19	Rffl	chr11	protein_coding	ring finger and FYVE like domain containing protein
known_NIR_3461	chr11	82709429;82736721	82736578;82761834	-	82709429	82761834	cassetteExon	ENSMUST00000108173.10	known	0.39	4.5	7	7;2	7	y	0.33	3.5	7	6;1	7	n	0.25	10.5	31	15;6	31	y	0.26	5.0	14	9;1	14	n	0.24	7.5	24	10;5	24	y	0.25	6.0	18	5;7	18	y	0.21	4.5	17	8;1	17	n	0.12	2.0	14	4;0	14	n	0.17	2.5	12	4;1	12	n	0.24	5.0	16	5;5	16	y	0.24	3.5	11	7;0	11	n	0.31	4.5	10	9;0	10	n	ENSMUSG00000020696.19	Rffl	chr11	protein_coding	ring finger and FYVE like domain containing protein
known_NIR_3462	chr11	82793959	82794916	-	82794023	82794916	A3SS	ENSMUST00000103213.10	known	0.08	1	11	1	11	n	0.09	1	10	1	10	n	0.06	1	17	1	17	n	0.11	1	8	1	8	n	0.10	1	9	1	9	n	0.07	1	13	1	13	n	0.00	0	7	0	7	n	0.40	2	3	2	3	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.11	1	8	1	8	n	0.13	2	13	2	13	y	ENSMUSG00000020692.15	Nle1	chr11	protein_coding	notchless homolog 1
known_NIR_3463	chr11	82824478	82824658	+	82820387	82824658	A5SS	ENSMUST00000108160.8	known	1.00	5	0	5	0	n	1.00	2	0	2	0	n	0.26	5	14	5	14	y	1.00	11	0	11	0	n	0.80	8	2	8	2	y	0.75	6	2	6	2	n	0.28	18	46	18	46	y	0.67	2	1	2	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	n	-	-	-	-	-	-	1.00	3	0	3	0	n	ENSMUSG00000018845.15	Unc45b	chr11	protein_coding	unc-45 myosin chaperone B
known_NIR_3464	chr11	83182893	83185341	+	83182923	83185341	A5SS	ENSMUST00000177150.2	known	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.50	5	5	5	5	y	0.00	0	6	0	6	n	ENSMUSG00000093483.2	AA465934	chr11	lncRNA	expressed sequence AA465934
known_NIR_3465	chr11	83189379	83189538	-	83189379	83189543	A5SS	ENSMUST00000175741.8	known	1.00	12	0	12	0	n	1.00	5	0	5	0	n	1.00	25	0	25	0	n	1.00	12	0	12	0	n	0.77	10	3	10	3	y	1.00	12	0	12	0	n	1.00	17	0	17	0	n	1.00	9	0	9	0	n	0.80	8	2	8	2	y	0.91	21	2	21	2	y	1.00	10	0	10	0	n	1.00	16	0	16	0	n	ENSMUSG00000018733.11	Pex12	chr11	protein_coding	peroxisomal biogenesis factor 12
known_NIR_3466	chr11	83189379	83189538	-	83189379	83189666	A5SS	ENSMUST00000018877.9	known	0.80	12	3	12	3	y	1.00	5	0	5	0	n	0.96	25	1	25	1	n	0.71	12	5	12	5	y	0.91	10	1	10	1	n	1.00	12	0	12	0	n	0.89	17	2	17	2	y	1.00	9	0	9	0	n	0.67	8	4	8	4	y	0.88	21	3	21	3	y	0.83	10	2	10	2	y	0.89	16	2	16	2	y	ENSMUSG00000018733.11	Pex12	chr11	protein_coding	peroxisomal biogenesis factor 12
known_NIR_3467	chr11	83189379	83189738	-	83189379	83189538	A5SS	ENSMUST00000108146.8	known	0.25	4	12	4	12	y	0.29	2	5	2	5	n	0.07	2	25	2	25	y	0.08	1	12	1	12	n	0.17	2	10	2	10	y	0.00	0	12	0	12	n	0.06	1	17	1	17	n	0.00	0	9	0	9	n	0.43	6	8	6	8	y	0.00	0	21	0	21	n	0.09	1	10	1	10	n	0.00	0	16	0	16	n	ENSMUSG00000018733.11	Pex12	chr11	protein_coding	peroxisomal biogenesis factor 12
known_NIR_3468	chr11	83189379	83189738	-	83189379	83189666	A5SS	ENSMUST00000018877.9	known	0.57	4	3	4	3	n	1.00	2	0	2	0	n	0.67	2	1	2	1	n	0.17	1	5	1	5	n	0.67	2	1	2	1	n	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.60	6	4	6	4	y	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	ENSMUSG00000018733.11	Pex12	chr11	protein_coding	peroxisomal biogenesis factor 12
known_NIR_3469	chr11	83241997	83256473	+	83241997;83255662	83255621;83256473	ES	ENSMUST00000018875.13	known	0.61	28	18.0	28	20;16	y	0.70	25	10.5	25	8;13	y	0.71	45	18.0	45	17;19	y	0.60	37	24.5	37	23;26	y	0.76	62	20.0	62	21;19	y	0.62	31	19.0	31	16;22	y	0.70	31	13.5	31	15;12	y	0.72	48	19.0	48	16;22	y	0.67	21	10.5	21	7;14	y	0.62	34	21.0	34	22;20	y	0.57	25	18.5	25	21;16	y	0.74	42	15.0	42	10;20	y	ENSMUSG00000035152.15	Ap2b1	chr11	protein_coding	adaptor-related protein complex 2, beta 1 subunit
known_NIR_3470	chr11	83364032	83364434	+	83364032	83372760	A3SS	ENSMUST00000134185.8	known	0.00	0	40	0	40	n	0.00	0	44	0	44	n	0.00	0	122	0	122	n	0.00	0	95	0	95	n	0.02	2	94	2	94	y	0.00	0	42	0	42	n	0.00	0	85	0	85	n	0.00	0	55	0	55	n	0.00	0	61	0	61	n	0.00	0	80	0	80	n	0.00	0	51	0	51	n	0.00	0	78	0	78	n	ENSMUSG00000020680.16	Taf15	chr11	protein_coding	TATA-box binding protein associated factor 15
known_NIR_3471	chr11	83467272	83467930	-	83467272	83469215	A5SS	ENSMUST00000019266.6	known	0.00	0	231	0	231	n	0.00	0	259	0	259	n	0.00	0	209	0	209	n	0.00	0	217	0	217	n	0.00	0	288	0	288	n	0.00	0	180	0	180	n	0.00	0	264	0	264	n	0.00	0	202	0	202	n	0.01	2	282	2	282	y	0.00	0	328	0	328	n	0.00	0	338	0	338	n	0.00	0	432	0	432	n	ENSMUSG00000019122.9	Ccl9	chr11	protein_coding	chemokine (C-C motif) ligand 9
known_NIR_3472	chr11	83644971	83646536	+	83644767	83646536	A5SS	ENSMUST00000001002.8	known	0.14	1	6	1	6	n	0.00	0	7	0	7	n	0.17	2	10	2	10	y	0.13	2	13	2	13	y	0.19	3	13	3	13	y	0.00	0	3	0	3	n	0.25	2	6	2	6	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.50	4	4	4	4	n	0.00	0	7	0	7	n	ENSMUSG00000000976.14	Heatr6	chr11	protein_coding	HEAT repeat containing 6
known_NIR_3473	chr11	83667562	83668083	+	83667562	83668064	A3SS	ENSMUST00000001002.8	known	0.00	0	12	0	12	n	0.14	3	18	3	18	y	0.00	0	25	0	25	n	0.00	0	11	0	11	n	0.16	6	31	6	31	y	0.00	0	14	0	14	n	0.21	5	19	5	19	y	0.00	0	24	0	24	n	0.00	0	15	0	15	n	0.04	1	25	1	25	n	0.06	1	16	1	16	n	0.03	1	38	1	38	n	ENSMUSG00000000976.14	Heatr6	chr11	protein_coding	HEAT repeat containing 6
known_NIR_3474	chr11	83743940	83746730	+	83742218	83746730	A5SS	ENSMUST00000135975.3	known	0.00	0	20	0	20	n	0.00	0	14	0	14	n	0.06	2	30	2	30	y	0.00	0	13	0	13	n	0.03	1	33	1	33	n	0.00	0	10	0	10	n	0.00	0	27	0	27	n	0.00	0	22	0	22	n	0.00	0	23	0	23	n	0.00	0	35	0	35	n	0.00	0	15	0	15	n	0.05	1	21	1	21	n	ENSMUSG00000020679.12	Hnf1b	chr11	protein_coding	HNF1 homeobox B
known_NIR_3475	chr11	83746929	83752620	+	83746929	83752542	A3SS	ENSMUST00000021016.10	known	0.38	8	13	8	13	y	0.41	7	10	7	10	y	0.29	14	34	14	34	y	0.35	7	13	7	13	y	0.39	18	28	18	28	y	0.14	3	18	3	18	y	0.10	4	38	4	38	y	0.27	8	22	8	22	y	0.17	8	40	8	40	y	0.24	8	25	8	25	y	0.30	9	21	9	21	y	0.19	7	29	7	29	y	ENSMUSG00000020679.12	Hnf1b	chr11	protein_coding	HNF1 homeobox B
known_NIR_3476	chr11	83842326	83842938	+	83842188	83842938	A5SS	ENSMUST00000049257.8	known	0.07	2	26	2	26	y	0.00	0	17	0	17	n	0.04	3	70	3	70	y	0.00	0	29	0	29	n	0.00	0	39	0	39	n	0.00	0	17	0	17	n	0.03	1	39	1	39	n	0.00	0	11	0	11	n	0.00	0	34	0	34	n	0.08	2	24	2	24	y	0.00	0	23	0	23	n	0.00	0	24	0	24	n	ENSMUSG00000020677.8	Ddx52	chr11	protein_coding	DExD box helicase 52
known_NIR_3477	chr11	83873133;83876377	83876075;83877640	+	83873133	83877640	cassetteExon	ENSMUST00000049714.15	known	1.00	7.5	0	9;6	0	n	0.82	4.5	1	6;3	1	n	0.82	9.0	2	11;7	2	y	0.76	9.5	3	10;9	3	y	0.93	12.5	1	11;14	1	n	0.91	10.0	1	13;7	1	n	0.85	11.5	2	14;9	2	y	1.00	9.0	0	9;9	0	n	0.62	5.0	3	6;4	3	y	0.71	15.0	6	10;20	6	y	0.82	9.0	2	6;12	2	y	0.61	11.0	7	10;12	7	y	ENSMUSG00000034940.16	Synrg	chr11	protein_coding	synergin, gamma
known_NIR_3478	chr11	83930147	83931623	+	83930147	83930482	3pMXE	ENSMUST00000132887.2	known	0.00	0	28	0	28	n	0.29	6	15	6	15	y	0.07	2	28	2	28	y	0.12	6	45	6	45	y	0.15	6	33	6	33	y	0.19	3	13	3	13	y	0.18	7	32	7	32	y	0.22	6	21	6	21	y	0.11	2	17	2	17	y	0.18	6	28	6	28	y	0.21	7	26	7	26	y	0.17	4	19	4	19	y	ENSMUSG00000034940.16	Synrg	chr11	protein_coding	synergin, gamma
known_NIR_3479	chr11	83930147	83931623	+	83930147;83930517	83930482;83931623	ES	ENSMUST00000049714.15	known	0.00	0	28.0	0	28;28	n	0.27	6	16.0	6	15;17	y	0.06	2	32.0	2	28;36	y	0.12	6	42.0	6	45;39	y	0.15	6	33.5	6	33;34	y	0.22	3	10.5	3	13;8	y	0.19	7	30.0	7	32;28	y	0.22	6	21.5	6	21;22	y	0.11	2	17.0	2	17;17	y	0.19	6	25.5	6	28;23	y	0.22	7	25.5	7	26;25	y	0.17	4	19.0	4	19;19	y	ENSMUSG00000034940.16	Synrg	chr11	protein_coding	synergin, gamma
known_NIR_3480	chr11	83975583	83976502	-	83975583	83976465	A5SS	ENSMUST00000018795.13	known	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.21	4	15	4	15	y	0.00	0	8	0	8	n	0.00	0	18	0	18	n	0.00	0	8	0	8	n	0.00	0	16	0	16	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.36	5	9	5	9	y	0.00	0	16	0	16	n	ENSMUSG00000018651.15	Tada2a	chr11	protein_coding	transcriptional adaptor 2A
known_NIR_3481	chr11	8403250	8418427	-	8403250	8428225	A5SS	ENSMUST00000239091.2	known	0.46	6	7	6	7	y	0.14	2	12	2	12	y	0.00	0	24	0	24	n	0.03	1	34	1	34	n	0.16	5	26	5	26	y	0.00	0	12	0	12	n	0.06	1	17	1	17	n	0.00	0	14	0	14	n	0.13	2	13	2	13	y	0.08	2	24	2	24	y	0.17	3	15	3	15	y	0.13	3	20	3	20	y	ENSMUSG00000020422.15	Tns3	chr11	protein_coding	tensin 3
known_NIR_3482	chr11	84070752	84086264	+	84070752;84083951	84083905;84086264	ES	ENSMUST00000137500.9	known	-	-	-	-	-	-	0.00	0	3.0	0	3;3	n	0.40	4	6.0	4	5;7	y	0.50	4	4.0	4	5;3	y	0.26	3	8.5	3	7;10	y	0.40	2	3.0	2	3;3	n	0.00	0	4.5	0	2;7	n	0.13	1	6.5	1	3;10	n	0.62	8	5.0	8	4;6	y	0.00	0	5.5	0	4;7	n	0.00	0	4.0	0	1;7	n	0.29	2	5.0	2	1;9	n	ENSMUSG00000020532.19	Acaca	chr11	protein_coding	acetyl-Coenzyme A carboxylase alpha
known_NIR_3483	chr11	84070752	84086264	+	84083951	84086264	A5SS&ES	ENSMUST00000133811.3	known	-	-	-	-	-	-	0.00	0	3	0	3	n	0.36	4	7	4	7	y	0.57	4	3	4	3	n	0.23	3	10	3	10	y	0.40	2	3	2	3	n	0.00	0	7	0	7	n	0.09	1	10	1	10	n	0.57	8	6	8	6	y	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.18	2	9	2	9	y	ENSMUSG00000020532.19	Acaca	chr11	protein_coding	acetyl-Coenzyme A carboxylase alpha
known_NIR_3484	chr11	84171336	84183717	+	84171336;84181137	84181114;84183717	ES	ENSMUST00000103201.8	known	0.55	6	5.0	6	5;5	y	0.44	2	2.5	2	3;2	n	0.37	11	19.0	11	18;20	y	0.24	4	13.0	4	16;10	y	0.38	10	16.5	10	17;16	y	0.63	6	3.5	6	2;5	y	0.52	8	7.5	8	8;7	y	0.36	4	7.0	4	9;5	y	0.32	6	12.5	6	12;13	y	0.17	4	19.0	4	21;17	y	0.22	4	14.0	4	16;12	y	0.57	14	10.5	14	10;11	y	ENSMUSG00000020532.19	Acaca	chr11	protein_coding	acetyl-Coenzyme A carboxylase alpha
known_NIR_3485	chr11	84716347	84719577	-	84716403	84719577	A3SS	ENSMUST00000047560.8	known	0.07	5	70	5	70	y	0.14	10	59	10	59	y	0.14	11	67	11	67	y	0.10	10	91	10	91	y	0.08	7	86	7	86	y	0.10	4	35	4	35	y	0.11	10	81	10	81	y	0.11	6	51	6	51	y	0.03	3	92	3	92	y	0.04	5	124	5	124	y	0.12	12	84	12	84	y	0.07	9	116	9	116	y	ENSMUSG00000034449.8	Dhrs11	chr11	protein_coding	dehydrogenase/reductase (SDR family) member 11
known_NIR_3486	chr11	84731261	84732247	-	84731261	84732241	A5SS	ENSMUST00000172405.8	known	0.51	55	53	55	53	y	0.62	55	33	55	33	y	0.42	75	102	75	102	y	0.62	75	45	75	45	y	0.51	99	95	99	95	y	0.44	40	51	40	51	y	0.57	87	65	87	65	y	0.51	56	54	56	54	y	0.58	75	54	75	54	y	0.62	93	57	93	57	y	0.54	72	62	72	62	y	0.54	91	77	91	77	y	ENSMUSG00000020530.15	Ggnbp2	chr11	protein_coding	gametogenetin binding protein 2
known_NIR_3487	chr11	84743362	84744880	-	84732450	84744880	A3SS	ENSMUST00000172405.8	known	0.04	5	110	5	110	y	0.04	4	85	4	85	y	0.02	3	153	3	153	y	0.03	5	164	5	164	y	0.03	5	185	5	185	y	0.04	4	91	4	91	y	0.04	6	160	6	160	y	0.00	0	102	0	102	n	0.03	4	126	4	126	y	0.02	3	159	3	159	y	0.01	1	99	1	99	n	0.03	5	161	5	161	y	ENSMUSG00000020530.15	Ggnbp2	chr11	protein_coding	gametogenetin binding protein 2
known_NIR_3488	chr11	84744993;84745206	84745081;84749266	-	84744993	84749266	cassetteExon	ENSMUST00000172405.8	known	0.02	2.5	123	5;0	123	n	0.02	1.0	51	0;2	51	n	0.03	4.0	144	4;4	144	y	0.01	1.0	128	1;1	128	n	0.04	8.0	172	12;4	172	y	0.08	5.0	56	5;5	56	y	0.04	5.0	135	3;7	135	y	0.03	2.0	78	2;2	78	y	0.03	4.0	134	7;1	134	n	0.01	1.5	108	2;1	108	n	0.01	1.0	92	1;1	92	n	0.05	9.0	155	5;13	155	y	ENSMUSG00000020530.15	Ggnbp2	chr11	protein_coding	gametogenetin binding protein 2
known_NIR_3489	chr11	84760624	84760703	-	84753144	84760703	A3SS	ENSMUST00000172405.8	known	0.00	0	68	0	68	n	0.05	3	57	3	57	y	0.01	1	102	1	102	n	0.00	0	91	0	91	n	0.03	4	145	4	145	y	0.03	2	60	2	60	y	0.02	2	110	2	110	y	0.04	2	46	2	46	y	0.00	0	69	0	69	n	0.02	2	103	2	103	y	0.04	3	73	3	73	y	0.02	2	109	2	109	y	ENSMUSG00000020530.15	Ggnbp2	chr11	protein_coding	gametogenetin binding protein 2
known_NIR_3490	chr11	84760898	84761431	-	84760898	84761464	A5SS	ENSMUST00000172405.8	known	0.36	4	7	4	7	y	0.87	13	2	13	2	y	0.68	27	13	27	13	y	0.78	18	5	18	5	y	0.83	34	7	34	7	y	0.72	18	7	18	7	y	0.71	17	7	17	7	y	0.86	19	3	19	3	y	0.69	11	5	11	5	y	0.71	15	6	15	6	y	0.84	16	3	16	3	y	0.62	16	10	16	10	y	ENSMUSG00000020530.15	Ggnbp2	chr11	protein_coding	gametogenetin binding protein 2
known_NIR_3491	chr11	84760898	84761516	-	84760898	84761431	A5SS	ENSMUST00000108081.9	known	0.20	1	4	1	4	n	0.19	3	13	3	13	y	0.07	2	27	2	27	y	0.05	1	18	1	18	n	0.15	6	34	6	34	y	0.10	2	18	2	18	y	0.11	2	17	2	17	y	0.10	2	19	2	19	y	0.21	3	11	3	11	y	0.17	3	15	3	15	y	0.00	0	16	0	16	n	0.20	4	16	4	16	y	ENSMUSG00000020530.15	Ggnbp2	chr11	protein_coding	gametogenetin binding protein 2
known_NIR_3492	chr11	84760898	84761516	-	84760898	84761464	A5SS	ENSMUST00000172405.8	known	0.12	1	7	1	7	n	0.60	3	2	3	2	n	0.13	2	13	2	13	y	0.17	1	5	1	5	n	0.46	6	7	6	7	y	0.22	2	7	2	7	n	0.22	2	7	2	7	n	0.40	2	3	2	3	n	0.38	3	5	3	5	n	0.33	3	6	3	6	n	0.00	0	3	0	3	n	0.29	4	10	4	10	y	ENSMUSG00000020530.15	Ggnbp2	chr11	protein_coding	gametogenetin binding protein 2
known_NIR_3493	chr11	84769338	84771054	-	84769338	84770545	5pMXE	ENSMUST00000067058.3	known	1.00	5	0	5	0	n	1.00	1	0	1	0	n	0.50	3	3	3	3	n	0.00	0	1	0	1	n	1.00	6	0	6	0	n	0.56	5	4	5	4	n	0.50	6	6	6	6	y	0.43	3	4	3	4	n	0.40	2	3	2	3	n	0.50	1	1	1	1	n	0.62	5	3	5	3	n	0.50	2	2	2	2	n	ENSMUSG00000045140.9	Pigw	chr11	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class W
known_NIR_3494	chr11	84783034	84785376	+	84783034;84784220	84784151;84785376	ES	ENSMUST00000093969.11	known	0.25	2	6.0	2	8;4	y	0.11	1	8.0	1	11;5	n	0.15	2	11.5	2	14;9	y	0.11	1	8.5	1	8;9	n	0.07	1	12.5	1	16;9	n	0.44	2	2.5	2	1;4	n	0.22	1	3.5	1	5;2	n	0.36	2	3.5	2	2;5	n	0.25	2	6.0	2	6;6	y	0.38	4	6.5	4	7;6	y	0.00	0	4.5	0	3;6	n	0.00	0	7.0	0	8;6	n	ENSMUSG00000020527.15	Myo19	chr11	protein_coding	myosin XIX
known_NIR_3495	chr11	84786190	84787947	+	84786190;84786380	84786304;84787947	ES	ENSMUST00000093969.11	known	0.20	2	8.0	2	8;8	y	0.17	1	5.0	1	5;5	n	0.00	0	9.0	0	11;7	n	0.00	0	14.5	0	12;17	n	0.13	2	13.5	2	15;12	y	0.00	0	4.5	0	5;4	n	0.00	0	9.5	0	9;10	n	0.00	0	7.0	0	4;10	n	0.00	0	7.0	0	7;7	n	0.21	4	15.5	4	14;17	y	0.35	3	5.5	3	7;4	y	0.00	0	12.0	0	5;19	n	ENSMUSG00000020527.15	Myo19	chr11	protein_coding	myosin XIX
known_NIR_3496	chr11	84805209	84806925	-	84805111	84806925	A3SS	ENSMUST00000103195.5	known	0.04	1	26	1	26	n	0.00	0	24	0	24	n	0.00	0	22	0	22	n	0.00	0	32	0	32	n	0.00	0	45	0	45	n	0.00	0	14	0	14	n	0.00	0	51	0	51	n	0.00	0	23	0	23	n	0.00	0	19	0	19	n	0.05	2	41	2	41	y	0.00	0	29	0	29	n	0.00	0	40	0	40	n	ENSMUSG00000020526.13	Znhit3	chr11	protein_coding	zinc finger, HIT type 3
known_NIR_3497	chr11	84923049	84925097	-	84923049	84927348	A5SS	ENSMUST00000108075.9	known	1.00	2	0	2	0	n	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.20	1	4	1	4	n	0.67	2	1	2	1	n	0.40	2	3	2	3	n	0.64	7	4	7	4	y	0.29	2	5	2	5	n	1.00	1	0	1	0	n	0.29	2	5	2	5	n	ENSMUSG00000000804.15	Usp32	chr11	protein_coding	ubiquitin specific peptidase 32
known_NIR_3498	chr11	85244059	85245714	+	85244059;85245487	85245420;85245714	ES	ENSMUST00000108056.8	known	0.67	2	1.0	2	0;2	n	0.57	2	1.5	2	2;1	n	0.90	9	1.0	9	1;1	n	0.67	9	4.5	9	4;5	y	0.79	13	3.5	13	5;2	y	0.80	6	1.5	6	2;1	n	0.67	8	4.0	8	3;5	y	0.71	5	2.0	5	3;1	n	1.00	4	0.0	4	0;0	n	0.96	13	0.5	13	0;1	n	0.73	4	1.5	4	1;2	n	0.75	6	2.0	6	2;2	y	ENSMUSG00000059439.16	Bcas3	chr11	protein_coding	breast carcinoma amplified sequence 3
known_NIR_3499	chr11	85244059	85245714	+	85244059;85245505	85245420;85245714	ES	ENSMUST00000108061.8	known	1.00	2	0.0	2	0;0	n	0.67	2	1.0	2	2;0	n	0.95	9	0.5	9	1;0	n	0.78	9	2.5	9	4;1	n	0.74	13	4.5	13	5;4	y	0.75	6	2.0	6	2;2	y	0.76	8	2.5	8	3;2	y	0.62	5	3.0	5	3;3	y	0.89	4	0.5	4	0;1	n	1.00	13	0.0	13	0;0	n	0.89	4	0.5	4	1;0	n	0.80	6	1.5	6	2;1	n	ENSMUSG00000059439.16	Bcas3	chr11	protein_coding	breast carcinoma amplified sequence 3
known_NIR_3500	chr11	85250505;85251888	85251850;85256378	+	85250505	85256378	cassetteExon	ENSMUST00000108056.8	known	0.00	0.0	7	0;0	7	n	0.00	0.0	12	0;0	12	n	0.16	3.5	18	3;4	18	y	0.05	2.0	41	2;2	41	y	0.11	3.5	29	2;5	29	y	0.11	1.0	8	0;2	8	n	0.04	1.5	35	2;1	35	n	0.14	3.0	19	3;3	19	y	0.00	0.0	11	0;0	11	n	0.02	0.5	32	0;1	32	n	0.00	0.0	5	0;0	5	n	0.06	1.5	22	1;2	22	n	ENSMUSG00000059439.16	Bcas3	chr11	protein_coding	breast carcinoma amplified sequence 3
known_NIR_3501	chr11	85386787	85387699	+	85386787	85400254	A3SS	ENSMUST00000108056.8	known	0.03	1	36	1	36	n	0.10	2	18	2	18	y	0.00	0	39	0	39	n	0.00	0	34	0	34	n	0.00	0	37	0	37	n	0.00	0	23	0	23	n	0.03	1	34	1	34	n	0.03	1	29	1	29	n	0.00	0	29	0	29	n	0.00	0	46	0	46	n	0.03	1	38	1	38	n	0.00	0	26	0	26	n	ENSMUSG00000059439.16	Bcas3	chr11	protein_coding	breast carcinoma amplified sequence 3
known_NIR_3502	chr11	85474820	85493572	+	85474820	85692611	A3SS	ENSMUST00000108061.8	known	0.00	0	46	0	46	n	0.00	0	41	0	41	n	0.00	0	27	0	27	n	0.00	0	46	0	46	n	0.00	0	59	0	59	n	0.00	0	32	0	32	n	0.04	2	52	2	52	y	0.00	0	23	0	23	n	0.00	0	20	0	20	n	0.00	0	62	0	62	n	0.00	0	47	0	47	n	0.00	0	61	0	61	n	ENSMUSG00000059439.16	Bcas3	chr11	protein_coding	breast carcinoma amplified sequence 3
known_NIR_3503	chr11	85692778	85712848	+	85692778;85704891	85704826;85712848	ES	ENSMUST00000108061.8	known	0.53	9	8.0	9	10;6	y	0.45	7	8.5	7	10;7	y	0.48	5	5.5	5	9;2	y	0.46	8	9.5	8	11;8	y	0.36	6	10.5	6	15;6	y	0.69	10	4.5	10	8;1	n	0.67	19	9.5	19	7;12	y	0.53	5	4.5	5	7;2	y	0.33	4	8.0	4	12;4	y	0.33	4	8.0	4	13;3	y	0.62	9	5.5	9	6;5	y	0.50	7	7.0	7	9;5	y	ENSMUSG00000059439.16	Bcas3	chr11	protein_coding	breast carcinoma amplified sequence 3
known_NIR_3504	chr11	85692778	85716028	+	85712938	85716028	5pMXE	ENSMUST00000140562.2	known	0.44	23	29	23	29	y	0.44	35	45	35	45	y	0.53	24	21	24	21	y	0.58	30	22	30	22	y	0.49	31	32	31	32	y	0.50	15	15	15	15	y	0.34	23	45	23	45	y	0.55	18	15	18	15	y	0.59	17	12	17	12	y	0.62	41	25	41	25	y	0.41	20	29	20	29	y	0.54	36	31	36	31	y	ENSMUSG00000059439.16	Bcas3	chr11	protein_coding	breast carcinoma amplified sequence 3
known_NIR_3505	chr11	85692778;85704891	85704826;85716028	+	85692778	85716028	cassetteExon	ENSMUST00000092821.10	known	0.21	6.0	23	10;2	23	y	0.16	6.5	35	10;3	35	y	0.23	7.0	24	9;5	24	y	0.18	6.5	30	11;2	30	y	0.22	8.5	31	15;2	31	y	0.23	4.5	15	8;1	15	n	0.18	5.0	23	7;3	23	y	0.20	4.5	18	7;2	18	y	0.29	7.0	17	12;2	17	y	0.15	7.5	41	13;2	41	y	0.15	3.5	20	6;1	20	n	0.13	5.5	36	9;2	36	y	ENSMUSG00000059439.16	Bcas3	chr11	protein_coding	breast carcinoma amplified sequence 3
known_NIR_3506	chr11	85692778;85712938	85712848;85716028	+	85692778	85716028	cassetteExon	ENSMUST00000092821.10	known	0.45	19.0	23	9;29	23	y	0.43	26.0	35	7;45	35	y	0.35	13.0	24	5;21	24	y	0.33	15.0	30	8;22	30	y	0.38	19.0	31	6;32	31	y	0.45	12.5	15	10;15	15	y	0.58	32.0	23	19;45	23	y	0.36	10.0	18	5;15	18	y	0.32	8.0	17	4;12	17	y	0.26	14.5	41	4;25	41	y	0.49	19.0	20	9;29	20	y	0.35	19.0	36	7;31	36	y	ENSMUSG00000059439.16	Bcas3	chr11	protein_coding	breast carcinoma amplified sequence 3
known_NIR_3507	chr11	85692778;85712938	85712848;85716028	+	85692778;85704891	85704826;85716028	MXE	ENSMUST00000142596.8	known	0.76	19.0	6.0	9;29	10;2	y	0.80	26.0	6.5	7;45	10;3	y	0.65	13.0	7.0	5;21	9;5	y	0.70	15.0	6.5	8;22	11;2	y	0.69	19.0	8.5	6;32	15;2	y	0.74	12.5	4.5	10;15	8;1	n	0.86	32.0	5.0	19;45	7;3	y	0.69	10.0	4.5	5;15	7;2	y	0.53	8.0	7.0	4;12	12;2	y	0.66	14.5	7.5	4;25	13;2	y	0.84	19.0	3.5	9;29	6;1	n	0.78	19.0	5.5	7;31	9;2	y	ENSMUSG00000059439.16	Bcas3	chr11	protein_coding	breast carcinoma amplified sequence 3
known_NIR_3508	chr11	85704891	85716028	+	85704891;85712938	85712848;85716028	ES	ENSMUST00000108061.8	known	0.10	2	17.5	2	6;29	y	0.10	3	26.0	3	7;45	y	0.30	5	11.5	5	2;21	y	0.12	2	15.0	2	8;22	y	0.10	2	19.0	2	6;32	y	0.11	1	8.0	1	1;15	n	0.10	3	28.5	3	12;45	y	0.19	2	8.5	2	2;15	y	0.20	2	8.0	2	4;12	y	0.12	2	14.0	2	3;25	y	0.06	1	17.0	1	5;29	n	0.10	2	18.0	2	5;31	y	ENSMUSG00000059439.16	Bcas3	chr11	protein_coding	breast carcinoma amplified sequence 3
known_NIR_3509	chr11	85704891	85716028	+	85712938	85716028	5pMXE	ENSMUST00000140562.2	known	0.06	2	29	2	29	y	0.06	3	45	3	45	y	0.19	5	21	5	21	y	0.08	2	22	2	22	y	0.06	2	32	2	32	y	0.06	1	15	1	15	n	0.06	3	45	3	45	y	0.12	2	15	2	15	y	0.14	2	12	2	12	y	0.07	2	25	2	25	y	0.03	1	29	1	29	n	0.06	2	31	2	31	y	ENSMUSG00000059439.16	Bcas3	chr11	protein_coding	breast carcinoma amplified sequence 3
known_NIR_3510	chr11	86377331	86379893	+	86377331;86377558	86377482;86379893	ES	ENSMUST00000020827.7	known	0.01	1	93.5	1	86;101	n	0.00	0	53.5	0	55;52	n	0.02	2	80.0	2	74;86	y	0.04	3	78.5	3	79;78	y	0.00	0	82.5	0	67;98	n	0.02	1	47.5	1	48;47	n	0.03	3	87.5	3	80;95	y	0.04	2	43.0	2	31;55	y	0.00	0	58.5	0	50;67	n	0.00	0	96.5	0	81;112	n	0.00	0	59.0	0	60;58	n	0.01	1	98.0	1	75;121	n	ENSMUSG00000020521.8	Rnft1	chr11	protein_coding	ring finger protein, transmembrane 1
known_NIR_3511	chr11	86407017;86407813	86407570;86408409	-	86407017	86408409	cassetteExon	ENSMUST00000154617.8	known	0.04	1.5	32	3;0	32	n	0.02	1.0	40	2;0	40	n	0.03	3.0	95	6;0	95	n	0.06	3.0	48	6;0	48	n	0.03	2.0	73	2;2	73	y	0.01	0.5	46	1;0	46	n	0.02	1.0	61	2;0	61	n	0.03	1.5	43	2;1	43	n	0.00	0.0	33	0;0	33	n	0.01	0.5	63	1;0	63	n	0.05	2.0	40	4;0	40	n	0.05	3.0	57	4;2	57	y	ENSMUSG00000020516.16	Rps6kb1	chr11	protein_coding	ribosomal protein S6 kinase, polypeptide 1
known_NIR_3512	chr11	86407813;86408218	86407977;86408409	-	86407813	86408409	cassetteExon	ENSMUST00000020824.15	known	1.00	2.0	0	1;3	0	n	1.00	3.0	0	0;6	0	n	1.00	3.0	0	0;6	0	n	1.00	2.0	0	0;4	0	n	0.78	7.0	2	4;10	2	y	1.00	2.5	0	0;5	0	n	1.00	3.5	0	2;5	0	n	0.78	3.5	1	0;7	1	n	1.00	4.0	0	2;6	0	n	1.00	3.5	0	0;7	0	n	1.00	4.0	0	2;6	0	n	0.00	0.0	2	0;0	2	n	ENSMUSG00000020516.16	Rps6kb1	chr11	protein_coding	ribosomal protein S6 kinase, polypeptide 1
known_NIR_3513	chr11	86426286;86434871	86434757;86435392	-	86426286	86435392	cassetteExon	ENSMUST00000154617.8	known	0.02	0.5	24	1;0	24	n	0.07	1.0	14	2;0	14	n	0.02	1.5	59	1;2	59	n	0.00	0.0	29	0;0	29	n	0.02	1.0	57	1;1	57	n	0.09	4.5	46	4;5	46	y	0.01	0.5	47	1;0	47	n	0.09	2.5	26	2;3	26	y	0.05	1.0	19	0;2	19	n	0.02	0.5	32	1;0	32	n	0.03	0.5	17	0;1	17	n	0.05	2.0	41	1;3	41	n	ENSMUSG00000020516.16	Rps6kb1	chr11	protein_coding	ribosomal protein S6 kinase, polypeptide 1
known_NIR_3514	chr11	86446130;86447613	86447521;86448551	+	86446130	86448551	cassetteExon	ENSMUST00000167178.9	known	0.11	1.0	8	2;0	8	n	0.21	3.0	11	2;4	11	y	0.22	2.0	7	2;2	7	y	0.40	2.0	3	2;2	3	n	0.04	0.5	11	1;0	11	n	0.00	0.0	5	0;0	5	n	0.09	1.5	15	1;2	15	n	0.20	1.0	4	0;2	4	n	0.13	2.0	13	3;1	13	n	0.33	2.0	4	3;1	4	n	0.06	0.5	8	0;1	8	n	0.00	0.0	8	0;0	8	n	ENSMUSG00000020513.16	Tubd1	chr11	protein_coding	tubulin, delta 1
known_NIR_3515	chr11	86588166	86593035	-	86591907	86593035	3pMXE	ENSMUST00000134999.2	known	1.00	238	0	238	0	n	0.99	262	2	262	2	y	1.00	476	2	476	2	y	1.00	251	0	251	0	n	1.00	424	1	424	1	n	1.00	238	0	238	0	n	0.99	339	5	339	5	y	0.99	204	2	204	2	y	0.99	240	3	240	3	y	0.99	391	3	391	3	y	1.00	278	1	278	1	n	1.00	345	0	345	0	n	ENSMUSG00000047126.18	Cltc	chr11	protein_coding	clathrin, heavy polypeptide (Hc)
known_NIR_3516	chr11	86588166;86591907	86591887;86593035	-	86588166	86593035	cassetteExon	ENSMUST00000103186.11	known	0.00	0.0	238	0;0	238	n	0.01	2.0	262	2;2	262	y	0.00	2.0	476	2;2	476	y	0.00	0.5	251	1;0	251	n	0.00	1.0	424	1;1	424	n	0.00	0.0	238	0;0	238	n	0.01	5.0	339	5;5	339	y	0.01	3.0	204	4;2	204	y	0.01	2.0	240	1;3	240	n	0.01	2.5	391	2;3	391	y	0.00	1.0	278	1;1	278	n	0.00	0.0	345	0;0	345	n	ENSMUSG00000047126.18	Cltc	chr11	protein_coding	clathrin, heavy polypeptide (Hc)
known_NIR_3517	chr11	86676663	86680312	-	86676663	86679993	5pMXE	ENSMUST00000136977.2	known	0.04	3	82	3	82	y	0.00	0	69	0	69	n	0.02	2	124	2	124	y	0.00	0	69	0	69	n	0.02	2	113	2	113	y	0.02	1	56	1	56	n	0.00	0	99	0	99	n	0.00	0	70	0	70	n	0.00	0	70	0	70	n	0.00	0	79	0	79	n	0.00	0	102	0	102	n	0.00	0	111	0	111	n	ENSMUSG00000018425.19	Dhx40	chr11	protein_coding	DEAH (Asp-Glu-Ala-His) box polypeptide 40
known_NIR_3518	chr11	86676663	86680312	-	86676663;86680175	86679993;86680312	ES	ENSMUST00000018569.14	known	0.04	3	70.0	3	82;58	y	0.00	0	54.5	0	69;40	n	0.02	2	110.5	2	124;97	y	0.00	0	70.5	0	69;72	n	0.02	2	103.5	2	113;94	y	0.02	1	59.0	1	56;62	n	0.00	0	86.0	0	99;73	n	0.00	0	65.0	0	70;60	n	0.00	0	64.5	0	70;59	n	0.00	0	81.0	0	79;83	n	0.00	0	79.0	0	102;56	n	0.00	0	103.5	0	111;96	n	ENSMUSG00000018425.19	Dhx40	chr11	protein_coding	DEAH (Asp-Glu-Ala-His) box polypeptide 40
known_NIR_3519	chr11	87092452	87097590	+	87092452;87096881	87096759;87097590	ES	ENSMUST00000041282.13	known	0.00	0	11.0	0	5;17	n	0.00	0	17.5	0	18;17	n	0.00	0	7.5	0	8;7	n	0.00	0	16.5	0	22;11	n	0.15	3	17.0	3	16;18	y	0.00	0	4.5	0	3;6	n	0.00	0	17.0	0	25;9	n	0.00	0	7.5	0	5;10	n	0.00	0	11.5	0	12;11	n	0.04	1	23.0	1	29;17	n	0.12	2	14.0	2	16;12	y	0.04	1	22.5	1	26;19	n	ENSMUSG00000018548.16	Trim37	chr11	protein_coding	tripartite motif-containing 37
known_NIR_3520	chr11	87469363	87474747	+	87474440	87474747	A5SS&ES	ENSMUST00000239011.2	known	1.00	7	0	7	0	n	0.71	5	2	5	2	n	1.00	5	0	5	0	n	1.00	1	0	1	0	n	0.81	13	3	13	3	y	1.00	3	0	3	0	n	0.85	11	2	11	2	y	1.00	6	0	6	0	n	1.00	2	0	2	0	n	0.80	4	1	4	1	n	0.75	6	2	6	2	n	0.92	12	1	12	1	n	ENSMUSG00000020486.20	Septin4	chr11	protein_coding	septin 4
known_NIR_3521	chr11	87479678	87480001	+	87479678	87479794	3pMXE	ENSMUST00000133202.3	known	0.17	2	10	2	10	y	0.20	3	12	3	12	y	0.14	1	6	1	6	n	0.19	3	13	3	13	y	0.09	2	21	2	21	y	0.15	2	11	2	11	y	0.10	2	19	2	19	y	0.00	0	6	0	6	n	0.10	1	9	1	9	n	0.08	1	11	1	11	n	0.04	1	22	1	22	n	0.05	1	21	1	21	n	ENSMUSG00000020486.20	Septin4	chr11	protein_coding	septin 4
known_NIR_3522	chr11	87479678	87480001	+	87479678;87479911	87479794;87480001	ES	ENSMUST00000239011.2	known	0.13	2	13.0	2	10;16	y	0.16	3	16.0	3	12;20	y	0.17	1	5.0	1	6;4	n	0.17	3	14.5	3	13;16	y	0.08	2	23.0	2	21;25	y	0.18	2	9.0	2	11;7	y	0.08	2	23.5	2	19;28	y	0.00	0	6.5	0	6;7	n	0.08	1	11.0	1	9;13	n	0.07	1	13.0	1	11;15	n	0.05	1	21.0	1	22;20	n	0.04	1	26.5	1	21;32	n	ENSMUSG00000020486.20	Septin4	chr11	protein_coding	septin 4
known_NIR_3523	chr11	87479678	87480001	+	87479911	87480001	A5SS	ENSMUST00000132723.8	known	0.11	2	16	2	16	y	0.13	3	20	3	20	y	0.20	1	4	1	4	n	0.16	3	16	3	16	y	0.07	2	25	2	25	y	0.22	2	7	2	7	n	0.07	2	28	2	28	y	0.00	0	7	0	7	n	0.07	1	13	1	13	n	0.06	1	15	1	15	n	0.05	1	20	1	20	n	0.03	1	32	1	32	n	ENSMUSG00000020486.20	Septin4	chr11	protein_coding	septin 4
known_NIR_3524	chr11	87480390	87480469	+	87480390	87480482	A3SS	ENSMUST00000239011.2	known	0.00	0	24	0	24	n	0.00	0	18	0	18	n	0.22	2	7	2	7	n	0.00	0	18	0	18	n	0.03	1	30	1	30	n	0.00	0	5	0	5	n	0.00	0	28	0	28	n	0.15	2	11	2	11	y	0.00	0	14	0	14	n	0.00	0	19	0	19	n	0.00	0	29	0	29	n	0.00	0	17	0	17	n	ENSMUSG00000020486.20	Septin4	chr11	protein_coding	septin 4
known_NIR_3525	chr11	87480644	87480835	+	87480644	87480782	A3SS	ENSMUST00000239011.2	known	0.12	3	22	3	22	y	0.21	6	22	6	22	y	0.05	1	19	1	19	n	0.21	6	22	6	22	y	0.17	5	24	5	24	y	0.38	6	10	6	10	y	0.15	7	39	7	39	y	0.20	2	8	2	8	y	0.00	0	10	0	10	n	0.15	4	23	4	23	y	0.12	4	28	4	28	y	0.21	9	33	9	33	y	ENSMUSG00000020486.20	Septin4	chr11	protein_coding	septin 4
known_NIR_3526	chr11	87483076	87484215	+	87483852	87484215	5pMXE	ENSMUST00000119628.8	known	0.29	2	5	2	5	n	0.14	1	6	1	6	n	0.33	7	14	7	14	y	0.27	4	11	4	11	y	0.28	7	18	7	18	y	0.21	3	11	3	11	y	0.40	4	6	4	6	y	0.29	7	17	7	17	y	0.77	10	3	10	3	y	0.33	5	10	5	10	y	0.50	5	5	5	5	y	0.50	6	6	6	6	y	ENSMUSG00000018401.18	Mtmr4	chr11	protein_coding	myotubularin related protein 4
known_NIR_3527	chr11	87483076;87483852	87483724;87484215	+	87483076	87484215	cassetteExon	ENSMUST00000103179.10	known	0.64	3.5	2	2;5	2	n	0.75	3.0	1	0;6	1	n	0.55	8.5	7	3;14	7	y	0.60	6.0	4	1;11	4	n	0.58	9.5	7	1;18	7	n	0.73	8.0	3	5;11	3	y	0.43	3.0	4	0;6	4	n	0.55	8.5	7	0;17	7	n	0.17	2.0	10	1;3	10	n	0.50	5.0	5	0;10	5	n	0.33	2.5	5	0;5	5	n	0.37	3.5	6	1;6	6	n	ENSMUSG00000018401.18	Mtmr4	chr11	protein_coding	myotubularin related protein 4
known_NIR_3528	chr11	87483852	87484215	+	87483781	87484215	A5SS	ENSMUST00000146871.8	known	0.83	5	1	5	1	n	1.00	6	0	6	0	n	0.93	14	1	14	1	n	0.92	11	1	11	1	n	1.00	18	0	18	0	n	0.92	11	1	11	1	n	1.00	6	0	6	0	n	0.89	17	2	17	2	y	1.00	3	0	3	0	n	0.91	10	1	10	1	n	1.00	5	0	5	0	n	0.67	6	3	6	3	n	ENSMUSG00000018401.18	Mtmr4	chr11	protein_coding	myotubularin related protein 4
known_NIR_3529	chr11	87629099;87631472	87631331;87633622	+	87629099	87633622	cassetteExon	ENSMUST00000093955.12	known	0.07	13.5	189	16;11	189	y	0.03	5.0	173	8;2	173	y	0.02	4.5	181	7;2	181	y	0.04	8.5	188	13;4	188	y	0.05	9.0	187	12;6	187	y	0.03	4.0	115	5;3	115	y	0.04	8.5	213	11;6	213	y	0.03	3.5	133	3;4	133	y	0.04	6.0	139	9;3	139	y	0.04	8.0	205	6;10	205	y	0.04	7.0	190	11;3	190	y	0.05	10.5	220	10;11	220	y	ENSMUSG00000020485.15	Supt4a	chr11	protein_coding	SPT4A, DSIF elongation factor subunit
known_NIR_3530	chr11	87872061	87874698	-	87872396	87874698	A3SS	ENSMUST00000178105.3	known	0.00	0	416	0	416	n	0.00	0	314	0	314	n	0.04	13	306	13	306	y	0.00	0	471	0	471	n	0.03	18	514	18	514	y	0.00	0	167	0	167	n	0.02	12	486	12	486	y	0.06	11	187	11	187	y	0.00	0	441	0	441	n	0.04	24	653	24	653	y	0.00	0	480	0	480	n	0.00	0	605	0	605	n	ENSMUSG00000020483.15	Dynll2	chr11	protein_coding	dynein light chain LC8-type 2
known_NIR_3531	chr11	87874836	87878069	-	87874836	87877154	5pMXE	ENSMUST00000107923.10	known	0.99	357	3	357	3	y	1.00	253	0	253	0	n	1.00	261	0	261	0	n	1.00	419	0	419	0	n	1.00	381	1	381	1	n	1.00	128	0	128	0	n	1.00	407	0	407	0	n	0.99	177	1	177	1	n	1.00	360	0	360	0	n	1.00	540	1	540	1	n	1.00	405	2	405	2	y	1.00	510	2	510	2	y	ENSMUSG00000020483.15	Dynll2	chr11	protein_coding	dynein light chain LC8-type 2
known_NIR_3532	chr11	87940041	87940803	+	87940041	87940238	A3SS	ENSMUST00000139129.9	known	0.00	0	118	0	118	n	0.00	0	69	0	69	n	0.03	4	140	4	140	y	0.00	0	127	0	127	n	0.00	0	148	0	148	n	0.00	0	65	0	65	n	0.01	1	102	1	102	n	0.00	0	92	0	92	n	0.03	3	85	3	85	y	0.02	3	145	3	145	y	0.00	0	92	0	92	n	0.03	5	142	5	142	y	ENSMUSG00000018379.18	Srsf1	chr11	protein_coding	serine and arginine-rich splicing factor 1
known_NIR_3533	chr11	87940041	87940803	+	87940041;87940424	87940238;87940803	ES	ENSMUST00000107920.10	known	0.00	0	59.5	0	118;1	n	0.00	0	35.0	0	69;1	n	0.05	4	71.5	4	140;3	y	0.00	0	65.5	0	127;4	n	0.00	0	75.0	0	148;2	n	0.00	0	32.5	0	65;0	n	0.02	1	52.0	1	102;2	n	0.00	0	46.0	0	92;0	n	0.07	3	42.5	3	85;0	n	0.04	3	74.0	3	145;3	y	0.00	0	47.0	0	92;2	n	0.06	5	72.0	5	142;2	y	ENSMUSG00000018379.18	Srsf1	chr11	protein_coding	serine and arginine-rich splicing factor 1
known_NIR_3534	chr11	87965551	87966999	+	87965551	87967017	A3SS	ENSMUST00000018521.11	known	0.43	3	4	3	4	n	0.00	0	8	0	8	n	0.12	3	23	3	23	y	0.08	2	23	2	23	y	0.14	4	24	4	24	y	0.16	3	16	3	16	y	0.19	5	21	5	21	y	0.27	3	8	3	8	y	0.06	1	17	1	17	n	0.11	2	17	2	17	y	0.00	0	8	0	8	n	0.14	3	19	3	19	y	ENSMUSG00000018377.11	Vezf1	chr11	protein_coding	vascular endothelial zinc finger 1
known_NIR_3535	chr11	88095311	88100679	+	88095311;88096185	88096015;88100679	ES	ENSMUST00000024486.14	known	0.00	0	98.0	0	62;134	n	0.01	1	90.5	1	57;124	n	0.02	2	93.5	2	61;126	y	0.03	3	83.5	3	74;93	y	0.03	3	99.0	3	72;126	y	0.03	2	61.0	2	50;72	y	0.00	0	113.5	0	87;140	n	0.02	1	58.5	1	42;75	n	0.00	0	69.0	0	53;85	n	0.03	3	110.5	3	72;149	y	0.00	0	81.5	0	57;106	n	0.03	3	101.0	3	77;125	y	ENSMUSG00000023723.18	Mrps23	chr11	protein_coding	mitochondrial ribosomal protein S23
known_NIR_3536	chr11	88095311	88100679	+	88096185	88100679	A5SS&ES	ENSMUST00000118784.8	known	0.00	0	134	0	134	n	0.01	1	124	1	124	n	0.02	2	126	2	126	y	0.03	3	93	3	93	y	0.02	3	126	3	126	y	0.03	2	72	2	72	y	0.00	0	140	0	140	n	0.01	1	75	1	75	n	0.00	0	85	0	85	n	0.02	3	149	3	149	y	0.00	0	106	0	106	n	0.02	3	125	3	125	y	ENSMUSG00000023723.18	Mrps23	chr11	protein_coding	mitochondrial ribosomal protein S23
known_NIR_3537	chr11	88095406	88096015	+	88095311	88096015	A5SS	ENSMUST00000024486.14	known	0.09	6	62	6	62	y	0.07	4	57	4	57	y	0.18	13	61	13	61	y	0.07	6	74	6	74	y	0.13	11	72	11	72	y	0.14	8	50	8	50	y	0.06	6	87	6	87	y	0.09	4	42	4	42	y	0.05	3	53	3	53	y	0.05	4	72	4	72	y	0.07	4	57	4	57	y	0.07	6	77	6	77	y	ENSMUSG00000023723.18	Mrps23	chr11	protein_coding	mitochondrial ribosomal protein S23
known_NIR_3538	chr11	88239818	88257611	-	88239764	88257611	A3SS	ENSMUST00000107909.8	known	0.60	9	6	9	6	y	0.20	2	8	2	8	y	0.37	10	17	10	17	y	0.28	5	13	5	13	y	0.52	11	10	11	10	y	0.62	8	5	8	5	y	0.37	10	17	10	17	y	0.54	7	6	7	6	y	0.50	4	4	4	4	n	0.18	2	9	2	9	y	0.40	6	9	6	9	y	0.37	7	12	7	12	y	ENSMUSG00000069769.14	Msi2	chr11	protein_coding	musashi RNA-binding protein 2
known_NIR_3539	chr11	88732128;88734522	88734416;88735085	-	88732128	88735085	cassetteExon	ENSMUST00000107903.8	known	0.03	5.0	167	1;9	167	n	0.01	1.5	122	2;1	122	n	0.01	1.0	145	1;1	145	n	0.01	1.0	189	2;0	189	n	0.01	2.5	231	4;1	231	n	0.04	3.5	96	5;2	96	y	0.01	3.0	233	3;3	233	y	0.02	2.0	127	4;0	127	n	0.02	2.5	116	2;3	116	y	0.00	1.0	238	1;1	238	n	0.02	4.0	166	3;5	166	y	0.00	1.0	210	0;2	210	n	ENSMUSG00000018428.16	Akap1	chr11	protein_coding	A kinase (PRKA) anchor protein 1
known_NIR_3540	chr11	88732128;88734650	88734416;88735085	-	88732128	88735085	cassetteExon	ENSMUST00000107903.8	known	0.01	1.0	167	1;1	167	n	0.01	1.0	122	2;0	122	n	0.01	1.0	145	1;1	145	n	0.01	1.0	189	2;0	189	n	0.01	3.0	231	4;2	231	y	0.03	2.5	96	5;0	96	n	0.01	2.0	233	3;1	233	n	0.02	3.0	127	4;2	127	y	0.01	1.0	116	2;0	116	n	0.00	0.5	238	1;0	238	n	0.01	1.5	166	3;0	166	n	0.00	0.0	210	0;0	210	n	ENSMUSG00000018428.16	Akap1	chr11	protein_coding	A kinase (PRKA) anchor protein 1
known_NIR_3541	chr11	88736691	88754476	-	88736691	88755223	A5SS	ENSMUST00000018572.11	known	0.20	13	53	13	53	y	0.21	9	33	9	33	y	0.06	4	63	4	63	y	0.21	16	61	16	61	y	0.24	27	85	27	85	y	0.09	5	51	5	51	y	0.23	19	65	19	65	y	0.20	10	41	10	41	y	0.37	22	38	22	38	y	0.28	30	79	30	79	y	0.24	13	41	13	41	y	0.10	8	70	8	70	y	ENSMUSG00000018428.16	Akap1	chr11	protein_coding	A kinase (PRKA) anchor protein 1
known_NIR_3542	chr11	90140561	90148346	+	90140561	90141597	3pMXE	ENSMUST00000134929.8	known	0.92	208	17	208	17	y	0.80	153	39	153	39	y	0.72	293	112	293	112	y	0.87	288	42	288	42	y	0.89	462	60	462	60	y	0.82	198	42	198	42	y	0.86	429	67	429	67	y	0.86	220	37	220	37	y	0.80	164	41	164	41	y	0.87	380	55	380	55	y	0.84	219	43	219	43	y	0.86	185	29	185	29	y	ENSMUSG00000110344.2	Gm45716	chr11	protein_coding	predicted gene 45716
known_NIR_3543	chr11	90278947	90280422	-	90278947	90281076	A5SS	ENSMUST00000004051.8	known	0.00	0	5	0	5	n	0.12	1	7	1	7	n	0.00	0	1	0	1	n	0.22	2	7	2	7	n	0.50	2	2	2	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.06	1	16	1	16	n	0.00	0	7	0	7	n	0.36	5	9	5	9	y	ENSMUSG00000003949.17	Hlf	chr11	protein_coding	hepatic leukemia factor
known_NIR_3544	chr11	90562026	90564490	-	90562026;90563763	90563659;90564490	ES	ENSMUST00000020849.9	known	0.03	1	29.0	1	25;33	n	0.00	0	23.0	0	25;21	n	0.04	2	44.0	2	47;41	y	0.15	7	38.5	7	39;38	y	0.07	3	42.0	3	50;34	y	0.00	0	16.0	0	15;17	n	0.11	5	41.0	5	44;38	y	0.12	3	21.0	3	17;25	y	0.06	2	32.0	2	33;31	y	0.20	9	37.0	9	43;31	y	0.20	5	20.5	5	20;21	y	0.07	4	49.5	4	59;40	y	ENSMUSG00000020541.13	Tom1l1	chr11	protein_coding	target of myb1-like 1 (chicken)
known_NIR_3545	chr11	90574156	90575888	-	90574139	90575888	A3SS	ENSMUST00000020849.9	known	0.05	1	20	1	20	n	0.00	0	12	0	12	n	0.00	0	26	0	26	n	0.00	0	42	0	42	n	0.00	0	38	0	38	n	0.06	1	17	1	17	n	0.06	2	31	2	31	y	0.09	3	29	3	29	y	0.07	2	27	2	27	y	0.03	1	37	1	37	n	0.00	0	17	0	17	n	0.00	0	38	0	38	n	ENSMUSG00000020541.13	Tom1l1	chr11	protein_coding	target of myb1-like 1 (chicken)
known_NIR_3546	chr11	93777899	93795985	+	93777899;93782214	93782165;93795985	ES	ENSMUST00000140880.8	known	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	0.46	3	3.5	3	3;4	y	0.67	3	1.5	3	1;2	n	0.36	2	3.5	2	2;5	n	0.50	3	3.0	3	3;3	n	0.77	5	1.5	5	2;1	n	0.50	1	1.0	1	1;1	n	1.00	2	0.0	2	0;0	n	0.00	0	1.5	0	0;3	n	-	-	-	-	-	-	0.67	4	2.0	4	2;2	n	ENSMUSG00000059474.14	Mbtd1	chr11	protein_coding	mbt domain containing 1
known_NIR_3547	chr11	93803284;93809773	93809657;93812193	+	93803284	93812193	cassetteExon	ENSMUST00000107853.8	known	0.50	4.0	4	3;5	4	y	0.18	1.5	7	2;1	7	n	0.30	7.0	16	8;6	16	y	0.26	3.5	10	4;3	10	y	0.15	4.0	23	3;5	23	y	0.14	1.0	6	1;1	6	n	0.00	0.0	11	0;0	11	n	0.33	5.0	10	3;7	10	y	0.18	2.0	9	2;2	9	y	0.16	2.5	13	5;0	13	n	0.23	1.5	5	2;1	5	n	0.23	4.5	15	4;5	15	y	ENSMUSG00000059474.14	Mbtd1	chr11	protein_coding	mbt domain containing 1
known_NIR_3548	chr11	93824784	93834488	+	93824784	93834601	A3SS	ENSMUST00000107853.8	known	0.00	0	8	0	8	n	0.08	1	12	1	12	n	0.19	4	17	4	17	y	0.11	2	17	2	17	y	0.06	1	17	1	17	n	0.09	1	10	1	10	n	0.22	5	18	5	18	y	0.13	2	13	2	13	y	0.00	0	10	0	10	n	0.14	2	12	2	12	y	0.12	2	14	2	14	y	0.12	3	22	3	22	y	ENSMUSG00000059474.14	Mbtd1	chr11	protein_coding	mbt domain containing 1
known_NIR_3549	chr11	93846450	93851494	-	93846450	93846652	5pMXE	ENSMUST00000021217.11	known	0.00	0	1161	0	1161	n	0.00	0	1206	0	1206	n	0.00	0	1873	0	1873	n	0.00	0	1054	0	1054	n	0.00	0	1850	0	1850	n	0.00	0	1135	0	1135	n	0.00	0	1618	0	1618	n	0.03	35	1179	35	1179	y	0.00	0	993	0	993	n	0.00	0	1295	0	1295	n	0.00	0	1263	0	1263	n	0.00	0	1157	0	1157	n	ENSMUSG00000020857.12	Nme2	chr11	protein_coding	NME/NM23 nucleoside diphosphate kinase 2
known_NIR_3550	chr11	93850339	93851494	-	93846450	93851494	A3SS	ENSMUST00000170303.2	known	1.00	793	0	793	0	n	1.00	839	0	839	0	n	1.00	1278	0	1278	0	n	1.00	669	0	669	0	n	1.00	1162	0	1162	0	n	1.00	739	0	739	0	n	1.00	1250	0	1250	0	n	0.95	727	35	727	35	y	1.00	667	0	667	0	n	1.00	892	0	892	0	n	1.00	892	0	892	0	n	1.00	729	0	729	0	n	ENSMUSG00000091228.2	Gm20390	chr11	protein_coding	predicted gene 20390
known_NIR_3551	chr11	93851661	93854053	-	93851606	93854053	A3SS	ENSMUST00000170303.2	known	0.01	5	550	5	550	y	0.01	4	471	4	471	y	0.01	5	799	5	799	y	0.01	4	456	4	456	y	0.00	3	775	3	775	y	0.01	5	517	5	517	y	0.01	5	766	5	766	y	0.00	1	527	1	527	n	0.01	5	419	5	419	y	0.01	7	557	7	557	y	0.01	5	537	5	537	y	0.02	8	516	8	516	y	ENSMUSG00000091228.2	Gm20390	chr11	protein_coding	predicted gene 20390
known_NIR_3552	chr11	93887399;93904569	93904449;93927426	+	93887399	93927426	cassetteExon	ENSMUST00000132772.8	known	1.00	22.0	0	21;23	0	n	1.00	9.5	0	9;10	0	n	1.00	59.0	0	45;73	0	n	1.00	31.0	0	36;26	0	n	1.00	35.5	0	32;39	0	n	1.00	30.0	0	27;33	0	n	1.00	41.5	0	34;49	0	n	0.88	22.0	3	23;21	3	y	1.00	17.5	0	18;17	0	n	1.00	45.5	0	50;41	0	n	1.00	20.0	0	19;21	0	n	1.00	50.5	0	45;56	0	n	ENSMUSG00000020859.17	Spag9	chr11	protein_coding	sperm associated antigen 9
known_NIR_3553	chr11	93939384	93958719	+	93939384	93951084	3pMXE	ENSMUST00000127066.2	known	0.93	14	1	14	1	n	1.00	18	0	18	0	n	0.97	59	2	59	2	y	1.00	51	0	51	0	n	0.97	60	2	60	2	y	0.97	33	1	33	1	n	0.94	46	3	46	3	y	0.97	33	1	33	1	n	0.84	26	5	26	5	y	1.00	46	0	46	0	n	0.97	31	1	31	1	n	0.99	66	1	66	1	n	ENSMUSG00000020859.17	Spag9	chr11	protein_coding	sperm associated antigen 9
known_NIR_3554	chr11	93939384;93951125	93951084;93958719	+	93939384	93958719	cassetteExon	ENSMUST00000041956.14	known	0.12	2.0	14	1;3	14	n	0.03	0.5	18	0;1	18	n	0.03	2.0	59	2;2	59	y	0.00	0.0	51	0;0	51	n	0.02	1.5	60	2;1	60	n	0.01	0.5	33	1;0	33	n	0.03	1.5	46	3;0	46	n	0.01	0.5	33	1;0	33	n	0.10	3.0	26	5;1	26	n	0.00	0.0	46	0;0	46	n	0.03	1.0	31	1;1	31	n	0.01	1.0	66	1;1	66	n	ENSMUSG00000020859.17	Spag9	chr11	protein_coding	sperm associated antigen 9
known_NIR_3555	chr11	93983253	93983638	+	93983253	93983641	A3SS	ENSMUST00000041956.14	known	0.00	0	41	0	41	n	0.00	0	33	0	33	n	0.03	2	76	2	76	y	0.00	0	58	0	58	n	0.01	1	76	1	76	n	0.00	0	42	0	42	n	0.00	0	60	0	60	n	0.00	0	50	0	50	n	0.00	0	41	0	41	n	0.01	1	68	1	68	n	0.00	0	46	0	46	n	0.00	0	89	0	89	n	ENSMUSG00000020859.17	Spag9	chr11	protein_coding	sperm associated antigen 9
known_NIR_3556	chr11	94002972;94004127	94004089;94004999	+	94002972	94004999	cassetteExon	ENSMUST00000041956.14	known	0.07	4.0	51	3;5	51	y	0.02	1.0	42	0;2	42	n	0.14	14.5	91	16;13	91	y	0.09	7.5	73	8;7	73	y	0.13	13.0	84	14;12	84	y	0.33	14.0	28	14;14	28	y	0.21	23.0	87	22;24	87	y	0.26	13.5	39	13;14	39	y	0.09	4.5	43	7;2	43	y	0.08	6.5	70	8;5	70	y	0.09	6.0	60	4;8	60	y	0.04	4.0	109	5;3	109	y	ENSMUSG00000020859.17	Spag9	chr11	protein_coding	sperm associated antigen 9
known_NIR_3557	chr11	94182404	94183220	-	94182404	94183911	A5SS	ENSMUST00000107821.9	known	0.00	0	116	0	116	n	0.00	0	75	0	75	n	0.00	0	96	0	96	n	0.00	0	79	0	79	n	0.00	0	107	0	107	n	0.00	0	46	0	46	n	0.02	2	113	2	113	y	0.00	0	65	0	65	n	0.00	0	73	0	73	n	0.04	5	119	5	119	y	0.00	0	102	0	102	n	0.00	0	125	0	125	n	ENSMUSG00000020863.16	Luc7l3	chr11	protein_coding	LUC7-like 3 (S. cerevisiae)
known_NIR_3558	chr11	94182404	94183911	-	94182404	94183233	A5SS&ES	ENSMUST00000132623.9	known	0.99	116	1	116	1	n	1.00	75	0	75	0	n	1.00	96	0	96	0	n	0.99	79	1	79	1	n	1.00	107	0	107	0	n	1.00	46	0	46	0	n	0.98	113	2	113	2	y	1.00	65	0	65	0	n	1.00	73	0	73	0	n	1.00	119	0	119	0	n	1.00	102	0	102	0	n	1.00	125	0	125	0	n	ENSMUSG00000020863.16	Luc7l3	chr11	protein_coding	LUC7-like 3 (S. cerevisiae)
known_NIR_3559	chr11	94182404	94183911	-	94182404	94183753	A5SS&ES	ENSMUST00000166312.8	known	0.94	116	7	116	7	y	0.97	75	2	75	2	y	1.00	96	0	96	0	n	0.93	79	6	79	6	y	0.94	107	7	107	7	y	0.96	46	2	46	2	y	0.99	113	1	113	1	n	0.98	65	1	65	1	n	0.91	73	7	73	7	y	0.92	119	10	119	10	y	0.96	102	4	102	4	y	0.98	125	3	125	3	y	ENSMUSG00000020863.16	Luc7l3	chr11	protein_coding	LUC7-like 3 (S. cerevisiae)
known_NIR_3560	chr11	94183881	94183964	-	94183858	94183964	A3SS	ENSMUST00000166312.8	known	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.11	2	16	2	16	y	0.00	0	12	0	12	n	0.00	0	1	0	1	n	0.00	0	23	0	23	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.20	3	12	3	12	y	0.00	0	17	0	17	n	0.00	0	17	0	17	n	ENSMUSG00000020863.16	Luc7l3	chr11	protein_coding	LUC7-like 3 (S. cerevisiae)
known_NIR_3561	chr11	94188746	94189776	-	94188746	94190782	A5SS	ENSMUST00000166312.8	known	0.04	4	102	4	102	y	0.01	1	76	1	76	n	0.03	3	111	3	111	y	0.05	6	117	6	117	y	0.01	2	147	2	147	y	0.02	1	64	1	64	n	0.01	1	123	1	123	n	0.00	0	73	0	73	n	0.01	1	115	1	115	n	0.03	5	146	5	146	y	0.02	2	92	2	92	y	0.02	3	147	3	147	y	ENSMUSG00000020863.16	Luc7l3	chr11	protein_coding	LUC7-like 3 (S. cerevisiae)
known_NIR_3562	chr11	94229347	94230066	+	94229347	94230379	A3SS	ENSMUST00000107818.9	known	0.01	2	149	2	149	y	0.01	2	161	2	161	y	0.02	3	138	3	138	y	0.01	1	113	1	113	n	0.01	3	233	3	233	y	0.00	0	116	0	116	n	0.01	3	202	3	202	y	0.00	0	102	0	102	n	0.00	0	119	0	119	n	0.01	1	162	1	162	n	0.00	0	139	0	139	n	0.02	3	126	3	126	y	ENSMUSG00000020864.14	Ankrd40	chr11	protein_coding	ankyrin repeat domain 40
known_NIR_3563	chr11	94229347	94230066	+	94229347	94230459	A3SS	ENSMUST00000051221.13	known	0.22	2	7	2	7	n	0.25	2	6	2	6	n	0.21	3	11	3	11	y	0.10	1	9	1	9	n	0.20	3	12	3	12	y	0.00	0	5	0	5	n	0.12	3	22	3	22	y	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.07	1	14	1	14	n	0.00	0	19	0	19	n	0.43	3	4	3	4	n	ENSMUSG00000020864.14	Ankrd40	chr11	protein_coding	ankyrin repeat domain 40
known_NIR_3564	chr11	94229347	94230459	+	94229347	94230379	A3SS	ENSMUST00000107818.9	known	0.04	7	149	7	149	y	0.04	6	161	6	161	y	0.07	11	138	11	138	y	0.07	9	113	9	113	y	0.05	12	233	12	233	y	0.04	5	116	5	116	y	0.10	22	202	22	202	y	0.09	10	102	10	102	y	0.06	8	119	8	119	y	0.08	14	162	14	162	y	0.12	19	139	19	139	y	0.03	4	126	4	126	y	ENSMUSG00000020864.14	Ankrd40	chr11	protein_coding	ankyrin repeat domain 40
known_NIR_3565	chr11	94250766	94251998	-	94250769	94251998	A3SS	ENSMUST00000178136.8	known	0.35	72	135	72	135	y	0.39	60	94	60	94	y	0.30	26	61	26	61	y	0.23	51	168	51	168	y	0.30	82	189	82	189	y	0.27	13	36	13	36	y	0.39	119	183	119	183	y	0.17	9	43	9	43	y	0.35	77	141	77	141	y	0.31	135	298	135	298	y	0.38	112	179	112	179	y	0.38	100	162	100	162	y	ENSMUSG00000020865.17	Abcc3	chr11	protein_coding	ATP-binding cassette, sub-family C (CFTR/MRP), member 3
known_NIR_3566	chr11	94435611	94439004	-	94435611	94438985	A5SS	ENSMUST00000040487.4	known	0.18	2	9	2	9	y	0.00	0	12	0	12	n	0.18	6	27	6	27	y	0.17	4	19	4	19	y	0.15	5	28	5	28	y	0.21	3	11	3	11	y	0.12	2	14	2	14	y	0.00	0	16	0	16	n	0.15	2	11	2	11	y	0.25	2	6	2	6	n	0.14	2	12	2	12	y	0.43	3	4	3	4	n	ENSMUSG00000039096.11	Rsad1	chr11	protein_coding	radical S-adenosyl methionine domain containing 1
known_NIR_3567	chr11	94439430	94439805	-	94439430	94439809	A5SS	ENSMUST00000040487.4	known	0.29	2	5	2	5	n	0.00	0	4	0	4	n	0.25	2	6	2	6	n	0.18	2	9	2	9	y	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.20	2	8	2	8	y	ENSMUSG00000039096.11	Rsad1	chr11	protein_coding	radical S-adenosyl methionine domain containing 1
known_NIR_3568	chr11	94460858	94461440	-	94460858;94461286	94461129;94461440	ES	ENSMUST00000103164.4	known	0.00	1	270.5	1	266;275	n	0.03	8	233.0	8	248;218	y	0.03	8	239.0	8	236;242	y	0.02	7	391.0	7	378;404	y	0.01	6	410.0	6	420;400	y	0.04	6	134.5	6	129;140	y	0.02	9	386.0	9	361;411	y	0.04	7	176.0	7	172;180	y	0.02	5	302.0	5	301;303	y	0.01	5	534.0	5	524;544	y	0.01	3	333.0	3	299;367	y	0.00	1	343.0	1	332;354	n	ENSMUSG00000076435.4	Acsf2	chr11	protein_coding	acyl-CoA synthetase family member 2
known_NIR_3569	chr11	94460858	94461440	-	94461286	94461440	3pMXE	ENSMUST00000155122.2	known	0.00	1	275	1	275	n	0.04	8	218	8	218	y	0.03	8	242	8	242	y	0.02	7	404	7	404	y	0.01	6	400	6	400	y	0.04	6	140	6	140	y	0.02	9	411	9	411	y	0.04	7	180	7	180	y	0.02	5	303	5	303	y	0.01	5	544	5	544	y	0.01	3	367	3	367	y	0.00	1	354	1	354	n	ENSMUSG00000076435.4	Acsf2	chr11	protein_coding	acyl-CoA synthetase family member 2
known_NIR_3570	chr11	94544667	94547234	+	94544667	94547313	A3SS	ENSMUST00000025278.8	known	0.01	1	143	1	143	n	0.00	0	166	0	166	n	0.01	1	157	1	157	n	0.01	1	194	1	194	n	0.01	2	192	2	192	y	0.00	0	103	0	103	n	0.00	0	190	0	190	n	0.00	0	80	0	80	n	0.01	2	139	2	139	y	0.01	2	203	2	203	y	0.00	1	211	1	211	n	0.00	0	169	0	169	n	ENSMUSG00000024414.14	Mrpl27	chr11	protein_coding	mitochondrial ribosomal protein L27
known_NIR_3571	chr11	94544986	94547313	+	94544667	94547313	A5SS	ENSMUST00000025278.8	known	0.11	17	143	17	143	y	0.09	16	166	16	166	y	0.07	12	157	12	157	y	0.10	21	194	21	194	y	0.11	24	192	24	192	y	0.06	7	103	7	103	y	0.12	27	190	27	190	y	0.15	14	80	14	80	y	0.09	13	139	13	139	y	0.11	26	203	26	203	y	0.11	27	211	27	211	y	0.08	14	169	14	169	y	ENSMUSG00000024414.14	Mrpl27	chr11	protein_coding	mitochondrial ribosomal protein L27
known_NIR_3572	chr11	94544986	94547313	+	94544986	94547234	A3SS	ENSMUST00000129498.8	known	1.00	17	0	17	0	n	1.00	16	0	16	0	n	0.92	12	1	12	1	n	0.88	21	3	21	3	y	1.00	24	0	24	0	n	1.00	7	0	7	0	n	1.00	27	0	27	0	n	1.00	14	0	14	0	n	1.00	13	0	13	0	n	0.87	26	4	26	4	y	0.96	27	1	27	1	n	0.88	14	2	14	2	y	ENSMUSG00000024414.14	Mrpl27	chr11	protein_coding	mitochondrial ribosomal protein L27
known_NIR_3573	chr11	94918148	94919305	-	94918148;94918804	94918691;94919305	ES	ENSMUST00000038431.8	known	0.02	5	203.0	5	201;205	y	0.01	2	170.5	2	168;173	y	0.03	3	114.0	3	110;118	y	0.01	3	218.0	3	208;228	y	0.04	8	196.5	8	188;205	y	0.04	3	75.0	3	75;75	y	0.02	6	271.0	6	274;268	y	0.00	0	98.5	0	94;103	n	0.01	1	156.0	1	159;153	n	0.01	3	258.0	3	237;279	y	0.01	2	222.0	2	210;234	y	0.01	3	251.5	3	240;263	y	ENSMUSG00000038967.14	Pdk2	chr11	protein_coding	pyruvate dehydrogenase kinase, isoenzyme 2
known_NIR_3574	chr11	94930316	94931211	-	94930316	94931965	A5SS	ENSMUST00000038431.8	known	0.02	3	176	3	176	y	0.01	1	97	1	97	n	0.00	0	101	0	101	n	0.02	4	249	4	249	y	0.01	3	225	3	225	y	0.02	1	64	1	64	n	0.00	0	211	0	211	n	0.00	0	108	0	108	n	0.03	4	140	4	140	y	0.01	2	274	2	274	y	0.05	10	192	10	192	y	0.05	11	218	11	218	y	ENSMUSG00000038967.14	Pdk2	chr11	protein_coding	pyruvate dehydrogenase kinase, isoenzyme 2
known_NIR_3575	chr11	94930316	94931362	-	94930316	94931211	A5SS	ENSMUST00000141712.8	known	0.50	3	3	3	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.20	1	4	1	4	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.21	3	11	3	11	y	ENSMUSG00000038967.14	Pdk2	chr11	protein_coding	pyruvate dehydrogenase kinase, isoenzyme 2
known_NIR_3576	chr11	94930316	94931362	-	94930316	94931965	A5SS	ENSMUST00000038431.8	known	0.02	3	176	3	176	y	0.00	0	97	0	97	n	0.00	0	101	0	101	n	0.00	1	249	1	249	n	0.00	1	225	1	225	n	0.00	0	64	0	64	n	0.00	0	211	0	211	n	0.01	1	108	1	108	n	0.00	0	140	0	140	n	0.00	0	274	0	274	n	0.00	0	192	0	192	n	0.01	3	218	3	218	y	ENSMUSG00000038967.14	Pdk2	chr11	protein_coding	pyruvate dehydrogenase kinase, isoenzyme 2
known_NIR_3577	chr11	95166713	95168295	-	95166713;95167375	95167269;95168295	ES	ENSMUST00000092766.12	known	0.15	6	33.0	6	31;35	y	0.19	6	25.5	6	25;26	y	0.35	19	35.0	19	29;41	y	0.07	3	38.0	3	42;34	y	0.16	8	42.5	8	50;35	y	0.30	8	18.5	8	22;15	y	0.13	7	46.0	7	46;46	y	0.18	6	27.5	6	31;24	y	0.26	8	22.5	8	20;25	y	0.30	21	48.0	21	53;43	y	0.31	12	27.0	12	31;23	y	0.18	10	45.0	10	47;43	y	ENSMUSG00000038909.17	Kat7	chr11	protein_coding	K(lysine) acetyltransferase 7
known_NIR_3578	chr11	95180696	95185389	-	95180696	95182346	A5SS&ES	ENSMUST00000144456.8	known	0.43	15	20	15	20	y	0.18	5	23	5	23	y	0.30	14	33	14	33	y	0.18	8	36	8	36	y	0.35	13	24	13	24	y	0.52	13	12	13	12	y	0.34	14	27	14	27	y	0.38	11	18	11	18	y	0.35	11	20	11	20	y	0.34	10	19	10	19	y	0.35	11	20	11	20	y	0.39	16	25	16	25	y	ENSMUSG00000038909.17	Kat7	chr11	protein_coding	K(lysine) acetyltransferase 7
known_NIR_3579	chr11	95180696	95185389	-	95180696;95182435	95182346;95185389	ES	ENSMUST00000092766.12	known	0.45	15	18.5	15	20;17	y	0.22	5	17.5	5	23;12	y	0.33	14	29.0	14	33;25	y	0.18	8	36.0	8	36;36	y	0.35	13	24.0	13	24;24	y	0.45	13	16.0	13	12;20	y	0.37	14	24.0	14	27;21	y	0.36	11	19.5	11	18;21	y	0.40	11	16.5	11	20;13	y	0.25	10	29.5	10	19;40	y	0.39	11	17.0	11	20;14	y	0.40	16	24.0	16	25;23	y	ENSMUSG00000038909.17	Kat7	chr11	protein_coding	K(lysine) acetyltransferase 7
known_NIR_3580	chr11	95191044	95196875	-	95191044;95194135	95193959;95196875	ES	ENSMUST00000092766.12	known	0.00	0	15.0	0	17;13	n	0.00	0	15.5	0	17;14	n	0.00	0	38.0	0	34;42	n	0.00	0	29.0	0	31;27	n	0.05	2	37.0	2	40;34	y	0.00	0	12.0	0	13;11	n	0.00	0	29.5	0	28;31	n	0.00	0	23.5	0	30;17	n	0.00	0	17.0	0	15;19	n	0.00	0	33.0	0	36;30	n	0.00	0	14.5	0	12;17	n	0.00	0	36.0	0	35;37	n	ENSMUSG00000038909.17	Kat7	chr11	protein_coding	K(lysine) acetyltransferase 7
known_NIR_3581	chr11	95191044	95196875	-	95194135	95196875	3pMXE	ENSMUST00000154327.2	known	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.00	0	42	0	42	n	0.00	0	27	0	27	n	0.06	2	34	2	34	y	0.00	0	11	0	11	n	0.00	0	31	0	31	n	0.00	0	17	0	17	n	0.00	0	19	0	19	n	0.00	0	30	0	30	n	0.00	0	17	0	17	n	0.00	0	37	0	37	n	ENSMUSG00000038909.17	Kat7	chr11	protein_coding	K(lysine) acetyltransferase 7
known_NIR_3582	chr11	95275826	95276627	+	95275939	95276627	A5SS	ENSMUST00000021243.16	known	0.01	2	196	2	196	y	0.00	0	195	0	195	n	0.01	3	500	3	500	y	0.00	0	203	0	203	n	0.00	0	302	0	302	n	0.01	3	313	3	313	y	0.00	0	253	0	253	n	0.01	2	300	2	300	y	0.00	0	161	0	161	n	0.00	0	251	0	251	n	0.00	0	229	0	229	n	0.00	0	176	0	176	n	ENSMUSG00000020873.16	Slc35b1	chr11	protein_coding	solute carrier family 35, member B1
known_NIR_3583	chr11	95276730	95277337	+	95276730	95277312	A3SS	ENSMUST00000021243.16	known	0.18	34	154	34	154	y	0.20	41	168	41	168	y	0.18	97	453	97	453	y	0.22	40	144	40	144	y	0.20	66	264	66	264	y	0.14	50	316	50	316	y	0.24	60	193	60	193	y	0.18	54	249	54	249	y	0.13	20	134	20	134	y	0.15	42	234	42	234	y	0.21	40	149	40	149	y	0.14	24	152	24	152	y	ENSMUSG00000020873.16	Slc35b1	chr11	protein_coding	solute carrier family 35, member B1
known_NIR_3584	chr11	95304967	95305158	+	95304957	95305158	A5SS	ENSMUST00000107724.9	known	0.43	3	4	3	4	n	0.33	1	2	1	2	n	0.36	5	9	5	9	y	0.33	2	4	2	4	n	0.20	2	8	2	8	y	0.00	0	2	0	2	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.20	1	4	1	4	n	ENSMUSG00000057522.16	Spop	chr11	protein_coding	speckle-type BTB/POZ protein
known_NIR_3585	chr11	95362170	95365132	+	95362170	95365057	A3SS	ENSMUST00000107724.9	known	0.03	6	230	6	230	y	0.00	0	226	0	226	n	0.04	13	318	13	318	y	0.01	3	265	3	265	y	0.03	13	400	13	400	y	0.03	5	194	5	194	y	0.02	9	416	9	416	y	0.02	5	238	5	238	y	0.06	14	230	14	230	y	0.04	13	342	13	342	y	0.02	4	207	4	207	y	0.04	16	352	16	352	y	ENSMUSG00000057522.16	Spop	chr11	protein_coding	speckle-type BTB/POZ protein
known_NIR_3586	chr11	95557965	95558863	+	95557868	95558863	A5SS	ENSMUST00000125172.8	known	0.01	2	158	2	158	y	0.01	1	135	1	135	n	0.00	0	134	0	134	n	0.00	0	149	0	149	n	0.01	2	191	2	191	y	0.00	0	76	0	76	n	0.01	2	176	2	176	y	0.02	2	85	2	85	y	0.00	0	162	0	162	n	0.01	2	235	2	235	y	0.02	3	185	3	185	y	0.01	1	174	1	174	n	ENSMUSG00000038845.12	Phb	chr11	protein_coding	prohibitin
known_NIR_3587	chr11	95604054	95639826	+	95603559	95639826	A5SS	ENSMUST00000107717.8	known	1.00	4	0	4	0	n	-	-	-	-	-	-	1.00	12	0	12	0	n	1.00	7	0	7	0	n	0.82	9	2	9	2	y	1.00	4	0	4	0	n	1.00	1	0	1	0	n	1.00	4	0	4	0	n	1.00	4	0	4	0	n	1.00	4	0	4	0	n	1.00	4	0	4	0	n	1.00	3	0	3	0	n	ENSMUSG00000075595.10	Zfp652	chr11	protein_coding	zinc finger protein 652
known_NIR_3588	chr11	95640433	95643701	+	95640973	95643701	A5SS	ENSMUST00000107717.8	known	0.00	0	16	0	16	n	0.21	3	11	3	11	y	0.08	3	35	3	35	y	0.05	1	18	1	18	n	0.27	8	22	8	22	y	0.15	3	17	3	17	y	0.14	3	18	3	18	y	0.12	3	21	3	21	y	0.08	1	12	1	12	n	0.29	6	15	6	15	y	0.17	1	5	1	5	n	0.12	2	14	2	14	y	ENSMUSG00000075595.10	Zfp652	chr11	protein_coding	zinc finger protein 652
known_NIR_3589	chr11	95719601	95721377	+	95719601	95721259	A3SS	ENSMUST00000133070.8	known	0.22	2	7	2	7	n	0.31	4	9	4	9	y	0.66	19	10	19	10	y	0.30	6	14	6	14	y	0.36	15	27	15	27	y	0.40	6	9	6	9	y	0.22	19	67	19	67	y	0.43	6	8	6	8	y	0.33	3	6	3	6	n	0.34	12	23	12	23	y	0.26	5	14	5	14	y	0.29	5	12	5	12	y	ENSMUSG00000075595.10	Zfp652	chr11	protein_coding	zinc finger protein 652
known_NIR_3590	chr11	95724157	95724466	-	95724160	95724466	A3SS	ENSMUST00000059026.10	known	0.21	3	11	3	11	y	0.00	0	23	0	23	n	0.00	0	14	0	14	n	0.00	0	2	0	2	n	0.00	0	17	0	17	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.25	2	6	2	6	n	ENSMUSG00000018381.16	Abi3	chr11	protein_coding	ABI family member 3
known_NIR_3591	chr11	95733621	95734638	+	95733252	95734638	A5SS	ENSMUST00000107714.9	known	0.17	2	10	2	10	y	0.39	7	11	7	11	y	0.72	13	5	13	5	y	0.43	3	4	3	4	n	0.74	20	7	20	7	y	0.83	10	2	10	2	y	0.76	13	4	13	4	y	0.40	4	6	4	6	y	0.38	6	10	6	10	y	0.35	6	11	6	11	y	0.29	2	5	2	5	n	0.60	9	6	9	6	y	ENSMUSG00000038811.14	Gngt2	chr11	protein_coding	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2
known_NIR_3592	chr11	95734218	95734638	+	95733252	95734638	A5SS	ENSMUST00000107714.9	known	0.58	14	10	14	10	y	0.66	21	11	21	11	y	0.55	6	5	6	5	y	0.50	4	4	4	4	n	0.77	23	7	23	7	y	0.87	13	2	13	2	y	0.84	21	4	21	4	y	0.71	15	6	15	6	y	0.60	15	10	15	10	y	0.39	7	11	7	11	y	0.72	13	5	13	5	y	0.68	13	6	13	6	y	ENSMUSG00000038811.14	Gngt2	chr11	protein_coding	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2
known_NIR_3593	chr11	95734218	95734638	+	95733621	95734638	A5SS	ENSMUST00000100532.10	known	0.88	14	2	14	2	y	0.75	21	7	21	7	y	0.32	6	13	6	13	y	0.57	4	3	4	3	n	0.53	23	20	23	20	y	0.57	13	10	13	10	y	0.62	21	13	21	13	y	0.79	15	4	15	4	y	0.71	15	6	15	6	y	0.54	7	6	7	6	y	0.87	13	2	13	2	y	0.59	13	9	13	9	y	ENSMUSG00000038811.14	Gngt2	chr11	protein_coding	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2
known_NIR_3594	chr11	95734721	95735858	+	95734721	95735877	A3SS	ENSMUST00000107714.9	known	0.42	15	21	15	21	y	0.33	19	39	19	39	y	0.41	24	35	24	35	y	0.28	5	13	5	13	y	0.54	33	28	33	28	y	0.54	19	16	19	16	y	0.30	21	50	21	50	y	0.51	22	21	22	21	y	0.57	16	12	16	12	y	0.32	11	23	11	23	y	0.27	9	24	9	24	y	0.35	11	20	11	20	y	ENSMUSG00000038811.14	Gngt2	chr11	protein_coding	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2
known_NIR_3595	chr11	95930243	95930528	+	95930243	95932451	A3SS	ENSMUST00000006217.10	known	0.00	0	218	0	218	n	0.00	1	243	1	243	n	0.01	2	168	2	168	y	0.00	0	212	0	212	n	0.01	3	251	3	251	y	0.03	4	122	4	122	y	0.00	0	276	0	276	n	0.00	0	144	0	144	n	0.01	1	192	1	192	n	0.00	0	316	0	316	n	0.00	0	234	0	234	n	0.00	0	244	0	244	n	ENSMUSG00000006058.11	Snf8	chr11	protein_coding	SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)
known_NIR_3596	chr11	95936128	95938021	+	95936128	95937106	A3SS	ENSMUST00000145749.2	known	0.05	14	260	14	260	y	0.07	20	261	20	261	y	0.04	9	207	9	207	y	0.06	15	220	15	220	y	0.06	17	277	17	277	y	0.03	4	129	4	129	y	0.10	26	246	26	246	y	0.04	5	130	5	130	y	0.05	10	204	10	204	y	0.08	28	309	28	309	y	0.04	13	295	13	295	y	0.08	23	248	23	248	y	ENSMUSG00000006058.11	Snf8	chr11	protein_coding	SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)
known_NIR_3597	chr11	95936128	95938021	+	95936128;95937180	95937106;95938021	ES	ENSMUST00000006217.10	known	0.05	14	246.5	14	260;233	y	0.07	20	272.5	20	261;284	y	0.04	9	197.5	9	207;188	y	0.07	15	204.0	15	220;188	y	0.06	17	255.0	17	277;233	y	0.03	4	136.5	4	129;144	y	0.10	26	240.5	26	246;235	y	0.04	5	114.0	5	130;98	y	0.05	10	174.0	10	204;144	y	0.09	28	297.0	28	309;285	y	0.04	13	277.0	13	295;259	y	0.09	23	242.0	23	248;236	y	ENSMUSG00000006058.11	Snf8	chr11	protein_coding	SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)
known_NIR_3598	chr11	95965859	95966253	-	95965859	95966453	A5SS	ENSMUST00000090541.12	known	0.01	2	168	2	168	y	0.02	3	156	3	156	y	0.06	9	145	9	145	y	0.04	7	184	7	184	y	0.05	13	246	13	246	y	0.08	8	96	8	96	y	0.01	2	210	2	210	y	0.02	2	107	2	107	y	0.04	7	184	7	184	y	0.03	9	282	9	282	y	0.03	8	228	8	228	y	0.06	12	198	12	198	y	ENSMUSG00000006057.16	Atp5g1	chr11	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9)
known_NIR_3599	chr11	95965859	95966383	-	95965859	95966253	A5SS	ENSMUST00000107686.8	known	1.00	480	2	480	2	y	0.99	479	3	479	3	y	0.99	598	9	598	9	y	0.99	502	7	502	7	y	0.98	677	13	677	13	y	0.98	320	8	320	8	y	1.00	730	2	730	2	y	0.99	303	2	303	2	y	0.99	486	7	486	7	y	0.99	741	9	741	9	y	0.99	772	8	772	8	y	0.98	688	12	688	12	y	ENSMUSG00000006057.16	Atp5g1	chr11	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9)
known_NIR_3600	chr11	95965859	95966383	-	95965859	95966453	A5SS	ENSMUST00000090541.12	known	0.74	480	168	480	168	y	0.75	479	156	479	156	y	0.80	598	145	598	145	y	0.73	502	184	502	184	y	0.73	677	246	677	246	y	0.77	320	96	320	96	y	0.78	730	210	730	210	y	0.74	303	107	303	107	y	0.73	486	184	486	184	y	0.72	741	282	741	282	y	0.77	772	228	772	228	y	0.78	688	198	688	198	y	ENSMUSG00000006057.16	Atp5g1	chr11	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9)
known_NIR_3601	chr11	96660769	96661465	-	96660148	96661465	A3SS	ENSMUST00000021246.9	known	0.00	0	9	0	9	n	0.00	0	16	0	16	n	0.03	1	29	1	29	n	0.06	1	16	1	16	n	0.00	0	23	0	23	n	0.00	0	16	0	16	n	0.12	2	15	2	15	y	0.09	1	10	1	10	n	0.00	0	14	0	14	n	0.03	1	30	1	30	n	0.00	0	22	0	22	n	0.00	0	16	0	16	n	ENSMUSG00000020876.15	Snx11	chr11	protein_coding	sorting nexin 11
known_NIR_3602	chr11	96665321	96667794	-	96665321;96666259	96666200;96667794	ES	ENSMUST00000021246.9	known	0.55	12	10.0	12	11;9	y	0.32	6	12.5	6	11;14	y	0.55	17	14.0	17	14;14	y	0.55	9	7.5	9	9;6	y	0.69	19	8.5	19	8;9	y	0.59	13	9.0	13	8;10	y	0.64	15	8.5	15	9;8	y	0.25	4	12.0	4	16;8	y	0.62	10	6.0	10	8;4	y	0.51	10	9.5	10	12;7	y	0.22	3	10.5	3	12;9	y	0.29	7	17.0	7	18;16	y	ENSMUSG00000020876.15	Snx11	chr11	protein_coding	sorting nexin 11
known_NIR_3603	chr11	96693648	96697442	+	96693824	96697442	A5SS	ENSMUST00000134585.8	known	0.79	56	15	56	15	y	0.90	45	5	45	5	y	0.78	56	16	56	16	y	0.83	59	12	59	12	y	0.81	81	19	81	19	y	0.81	35	8	35	8	y	0.88	74	10	74	10	y	0.82	40	9	40	9	y	0.87	52	8	52	8	y	0.80	70	17	70	17	y	0.80	52	13	52	13	y	0.82	67	15	67	15	y	ENSMUSG00000018666.14	Cbx1	chr11	protein_coding	chromobox 1
known_NIR_3604	chr11	96693648	96699010	+	96693648;96697590	96697442;96699010	ES	ENSMUST00000093943.10	known	0.06	2	30.5	2	56;5	y	0.00	0	23.0	0	45;1	n	0.00	0	31.0	0	56;6	n	0.00	0	30.5	0	59;2	n	0.00	0	42.5	0	81;4	n	0.10	2	18.5	2	35;2	y	0.00	0	40.5	0	74;7	n	0.00	0	21.0	0	40;2	n	0.00	0	26.5	0	52;1	n	0.00	0	37.0	0	70;4	n	0.00	0	27.0	0	52;2	n	0.00	0	35.5	0	67;4	n	ENSMUSG00000018666.14	Cbx1	chr11	protein_coding	chromobox 1
known_NIR_3605	chr11	96713145	96713235	-	96713145	96718024	A5SS	ENSMUST00000167149.8	known	0.00	0	106	0	106	n	0.00	0	74	0	74	n	0.02	3	176	3	176	y	0.00	0	159	0	159	n	0.00	0	232	0	232	n	0.00	0	127	0	127	n	0.00	0	283	0	283	n	0.00	0	128	0	128	n	0.00	0	121	0	121	n	0.00	0	225	0	225	n	0.00	0	119	0	119	n	0.00	0	127	0	127	n	ENSMUSG00000038615.18	Nfe2l1	chr11	protein_coding	nuclear factor, erythroid derived 2,-like 1
known_NIR_3606	chr11	96719049	96720645	-	96719049	96720237	5pMXE	ENSMUST00000167149.8	known	0.38	23	38	23	38	y	0.33	14	28	14	28	y	0.40	38	57	38	57	y	0.29	25	62	25	62	y	0.36	49	86	49	86	y	0.31	22	49	22	49	y	0.23	38	124	38	124	y	0.33	28	57	28	57	y	0.33	20	41	20	41	y	0.24	34	107	34	107	y	0.21	17	64	17	64	y	0.28	18	47	18	47	y	ENSMUSG00000038615.18	Nfe2l1	chr11	protein_coding	nuclear factor, erythroid derived 2,-like 1
known_NIR_3607	chr11	96741567;96742980	96742937;96744261	+	96741567	96744261	cassetteExon	ENSMUST00000018816.14	known	0.07	5.0	68	2;8	68	y	0.04	3.0	72	5;1	72	n	0.09	7.0	75	8;6	75	y	0.07	4.5	63	5;4	63	y	0.05	7.0	128	8;6	128	y	0.15	9.5	56	7;12	56	y	0.09	11.5	121	12;11	121	y	0.05	3.5	64	3;4	64	y	0.06	4.0	64	3;5	64	y	0.08	8.0	97	7;9	97	y	0.08	6.5	75	7;6	75	y	0.06	5.5	83	5;6	83	y	ENSMUSG00000018672.16	Copz2	chr11	protein_coding	coatomer protein complex, subunit zeta 2
known_NIR_3608	chr11	96745465	96746086	+	96745465	96746082	A3SS	ENSMUST00000018816.14	known	0.04	7	184	7	184	y	0.04	7	158	7	158	y	0.00	0	144	0	144	n	0.04	7	159	7	159	y	0.03	6	217	6	217	y	0.00	0	103	0	103	n	0.05	14	286	14	286	y	0.00	0	133	0	133	n	0.00	0	129	0	129	n	0.06	14	212	14	212	y	0.03	6	202	6	202	y	0.03	5	172	5	172	y	ENSMUSG00000018672.16	Copz2	chr11	protein_coding	coatomer protein complex, subunit zeta 2
known_NIR_3609	chr11	96803221	96804208	-	96803221;96803880	96803832;96804208	ES	ENSMUST00000103152.11	known	0.00	0	173.5	0	177;170	n	0.02	3	170.5	3	181;160	y	0.01	3	307.0	3	297;317	y	0.00	1	206.0	1	209;203	n	0.01	2	285.0	2	288;282	y	0.00	1	213.5	1	236;191	n	0.00	0	228.5	0	226;231	n	0.01	2	224.0	2	231;217	y	0.00	0	202.0	0	208;196	n	0.00	0	262.0	0	283;241	n	0.00	1	212.0	1	211;213	n	0.00	0	246.0	0	245;247	n	ENSMUSG00000018669.15	Cdk5rap3	chr11	protein_coding	CDK5 regulatory subunit associated protein 3
known_NIR_3610	chr11	96803221	96804208	-	96803880	96804208	A3SS&ES	ENSMUST00000153305.8	known	0.00	0	170	0	170	n	0.02	3	160	3	160	y	0.01	3	317	3	317	y	0.00	1	203	1	203	n	0.01	2	282	2	282	y	0.01	1	191	1	191	n	0.00	0	231	0	231	n	0.01	2	217	2	217	y	0.00	0	196	0	196	n	0.00	0	241	0	241	n	0.00	1	213	1	213	n	0.00	0	247	0	247	n	ENSMUSG00000018669.15	Cdk5rap3	chr11	protein_coding	CDK5 regulatory subunit associated protein 3
known_NIR_3611	chr11	96804622	96806877	-	96804622	96806977	A5SS	ENSMUST00000103152.11	known	0.00	1	201	1	201	n	0.01	1	180	1	180	n	0.01	3	301	3	301	y	0.01	2	232	2	232	y	0.01	2	333	2	333	y	0.00	0	249	0	249	n	0.02	5	246	5	246	y	0.01	3	250	3	250	y	0.00	0	216	0	216	n	0.02	5	307	5	307	y	0.00	0	222	0	222	n	0.00	0	193	0	193	n	ENSMUSG00000018669.15	Cdk5rap3	chr11	protein_coding	CDK5 regulatory subunit associated protein 3
known_NIR_3612	chr11	96804703	96806977	-	96804622	96806977	A3SS	ENSMUST00000103152.11	known	0.00	1	201	1	201	n	0.00	0	180	0	180	n	0.00	0	301	0	301	n	0.00	0	232	0	232	n	0.00	0	333	0	333	n	0.00	0	249	0	249	n	0.00	0	246	0	246	n	0.01	2	250	2	250	y	0.01	3	216	3	216	y	0.01	4	307	4	307	y	0.00	0	222	0	222	n	0.00	0	193	0	193	n	ENSMUSG00000018669.15	Cdk5rap3	chr11	protein_coding	CDK5 regulatory subunit associated protein 3
known_NIR_3613	chr11	96830895	96833236	-	96830895;96831781	96831682;96833236	ES	ENSMUST00000018803.12	known	0.03	14	522.0	14	540;504	y	0.02	6	382.5	6	400;365	y	0.01	4	721.5	4	777;666	y	0.01	4	613.5	4	631;596	y	0.00	4	808.0	4	812;804	y	0.01	2	315.0	2	335;295	y	0.01	8	650.5	8	673;628	y	0.00	2	407.5	2	415;400	y	0.01	6	409.0	6	422;396	y	0.01	7	698.0	7	717;679	y	0.01	3	449.0	3	437;461	y	0.01	3	591.0	3	599;583	y	ENSMUSG00000018659.13	Pnpo	chr11	protein_coding	pyridoxine 5'-phosphate oxidase
known_NIR_3614	chr11	96830895	96833236	-	96831781	96833236	A3SS	ENSMUST00000153896.2	known	0.03	14	504	14	504	y	0.02	6	365	6	365	y	0.01	4	666	4	666	y	0.01	4	596	4	596	y	0.00	4	804	4	804	y	0.01	2	295	2	295	y	0.01	8	628	8	628	y	0.00	2	400	2	400	y	0.01	6	396	6	396	y	0.01	7	679	7	679	y	0.01	3	461	3	461	y	0.01	3	583	3	583	y	ENSMUSG00000018659.13	Pnpo	chr11	protein_coding	pyridoxine 5'-phosphate oxidase
known_NIR_3615	chr11	97127047	97128920	-	97126995	97128920	A3SS	ENSMUST00000167806.8	known	0.00	0	15	0	15	n	0.08	1	11	1	11	n	0.04	2	51	2	51	y	0.04	1	26	1	26	n	0.07	3	43	3	43	y	0.00	0	21	0	21	n	0.03	1	29	1	29	n	0.00	0	17	0	17	n	0.00	0	28	0	28	n	0.03	1	39	1	39	n	0.00	0	22	0	22	n	0.00	0	34	0	34	n	ENSMUSG00000001441.14	Npepps	chr11	protein_coding	aminopeptidase puromycin sensitive
known_NIR_3616	chr11	97582601	97582684	-	97582605	97582684	A3SS	ENSMUST00000179765.8	known	0.06	1	17	1	17	n	0.00	0	14	0	14	n	0.06	2	33	2	33	y	0.00	0	7	0	7	n	0.00	0	23	0	23	n	0.00	0	21	0	21	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.09	1	10	1	10	n	0.00	0	26	0	26	n	0.00	0	13	0	13	n	0.05	1	20	1	20	n	ENSMUSG00000018537.17	Pcgf2	chr11	protein_coding	polycomb group ring finger 2
known_NIR_3617	chr11	97584394;97590126	97590032;97590362	-	97584394	97590362	cassetteExon	ENSMUST00000169807.8	known	0.69	4.5	2	7;2	2	y	1.00	2.0	0	4;0	0	n	0.00	0.0	3	0;0	3	n	1.00	0.5	0	1;0	0	n	0.41	3.5	5	7;0	5	n	1.00	3.5	0	7;0	0	n	1.00	1.5	0	3;0	0	n	1.00	1.0	0	2;0	0	n	1.00	1.0	0	2;0	0	n	0.60	3.0	2	6;0	2	n	1.00	1.5	0	3;0	0	n	0.43	1.5	2	3;0	2	n	ENSMUSG00000018537.17	Pcgf2	chr11	protein_coding	polycomb group ring finger 2
known_NIR_3618	chr11	97672715	97673170	-	97672715	97672829	5pMXE	ENSMUST00000151118.2	known	1.00	1252	3	1252	3	y	1.00	1329	3	1329	3	y	1.00	1833	1	1833	1	n	1.00	1157	4	1157	4	y	1.00	1739	0	1739	0	n	1.00	913	0	913	0	n	1.00	1667	1	1667	1	n	1.00	955	0	955	0	n	1.00	1162	1	1162	1	n	1.00	1586	3	1586	3	y	1.00	1431	5	1431	5	y	1.00	1420	1	1420	1	n	ENSMUSG00000071415.7	Rpl23	chr11	protein_coding	ribosomal protein L23
known_NIR_3619	chr11	97691940	97697651	+	97690688	97697651	A5SS	ENSMUST00000143571.2	known	0.00	0	186	0	186	n	0.02	2	111	2	111	y	0.00	0	164	0	164	n	0.00	0	269	0	269	n	0.00	0	306	0	306	n	0.02	3	145	3	145	y	0.00	0	213	0	213	n	0.00	1	204	1	204	n	0.01	2	159	2	159	y	0.00	0	210	0	210	n	0.00	0	166	0	166	n	0.01	2	220	2	220	y	ENSMUSG00000038366.16	Lasp1	chr11	protein_coding	LIM and SH3 protein 1
known_NIR_3620	chr11	97692960	97697651	+	97690688	97697651	A5SS	ENSMUST00000143571.2	known	0.01	2	186	2	186	y	0.02	2	111	2	111	y	0.01	1	164	1	164	n	0.00	1	269	1	269	n	0.00	0	306	0	306	n	0.01	1	145	1	145	n	0.01	3	213	3	213	y	0.00	1	204	1	204	n	0.01	1	159	1	159	n	0.00	1	210	1	210	n	0.03	5	166	5	166	y	0.01	2	220	2	220	y	ENSMUSG00000038366.16	Lasp1	chr11	protein_coding	LIM and SH3 protein 1
known_NIR_3621	chr11	97907668	97909099	-	97907668	97910506	A5SS	ENSMUST00000017552.13	known	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.18	3	14	3	14	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020882.18	Cacnb1	chr11	protein_coding	calcium channel, voltage-dependent, beta 1 subunit
known_NIR_3622	chr11	97917816	97918649	+	97917588	97918649	A5SS	ENSMUST00000092425.11	known	0.99	636	6	636	6	y	0.98	534	10	534	10	y	0.99	753	10	753	10	y	0.99	478	5	478	5	y	0.99	808	5	808	5	y	0.99	536	3	536	3	y	0.99	773	7	773	7	y	0.99	416	4	416	4	y	0.99	513	7	513	7	y	0.98	678	12	678	12	y	0.99	649	7	649	7	y	0.99	657	5	657	5	y	ENSMUSG00000017404.13	Rpl19	chr11	protein_coding	ribosomal protein L19
known_NIR_3623	chr11	98019202	98040942	-	98019202	98040142	5pMXE	ENSMUST00000103143.10	known	0.33	3	6	3	6	n	0.00	0	4	0	4	n	0.11	2	16	2	16	y	0.32	7	15	7	15	y	0.21	5	19	5	19	y	0.00	0	7	0	7	n	0.19	3	13	3	13	y	0.29	2	5	2	5	n	0.13	2	13	2	13	y	0.23	6	20	6	20	y	0.00	0	6	0	6	n	0.19	7	29	7	29	y	ENSMUSG00000020883.19	Fbxl20	chr11	protein_coding	F-box and leucine-rich repeat protein 20
known_NIR_3624	chr11	98043951	98049155	-	98043789	98049155	A3SS	ENSMUST00000092735.12	known	0.00	0	3	0	3	n	0.50	3	3	3	3	n	0.64	7	4	7	4	y	0.00	0	4	0	4	n	0.57	4	3	4	3	n	1.00	4	0	4	0	n	0.71	5	2	5	2	n	0.00	0	1	0	1	n	0.50	2	2	2	2	n	0.50	1	1	1	1	n	0.30	3	7	3	7	y	0.79	11	3	11	3	y	ENSMUSG00000018160.16	Med1	chr11	protein_coding	mediator complex subunit 1
known_NIR_3625	chr11	98048960	98049155	-	98043789	98049155	A3SS	ENSMUST00000092735.12	known	0.40	2	3	2	3	n	0.70	7	3	7	3	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.50	3	3	3	3	n	1.00	3	0	3	0	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.67	4	2	4	2	n	0.67	2	1	2	1	n	0.36	4	7	4	7	y	0.25	1	3	1	3	n	ENSMUSG00000018160.16	Med1	chr11	protein_coding	mediator complex subunit 1
known_NIR_3626	chr11	98048960	98049155	-	98043951	98049155	A3SS	ENSMUST00000126483.8	known	1.00	2	0	2	0	n	0.70	7	3	7	3	y	0.00	0	7	0	7	n	-	-	-	-	-	-	0.43	3	4	3	4	n	0.43	3	4	3	4	n	0.00	0	5	0	5	n	1.00	1	0	1	0	n	0.67	4	2	4	2	n	0.67	2	1	2	1	n	0.57	4	3	4	3	n	0.08	1	11	1	11	n	ENSMUSG00000018160.16	Med1	chr11	protein_coding	mediator complex subunit 1
known_NIR_3627	chr11	98061266	98061774	-	98060278	98061774	A3SS	ENSMUST00000092735.12	known	0.07	1	13	1	13	n	0.13	2	13	2	13	y	0.06	1	17	1	17	n	0.00	0	15	0	15	n	0.12	3	21	3	21	y	0.00	0	9	0	9	n	0.24	5	16	5	16	y	0.00	0	6	0	6	n	0.08	1	12	1	12	n	0.06	1	17	1	17	n	0.00	0	7	0	7	n	0.00	0	19	0	19	n	ENSMUSG00000018160.16	Med1	chr11	protein_coding	mediator complex subunit 1
known_NIR_3628	chr11	98080114	98083633	-	98080114	98083885	A5SS	ENSMUST00000092735.12	known	0.00	0	13	0	13	n	0.14	2	12	2	12	y	0.00	0	13	0	13	n	0.00	0	21	0	21	n	0.00	0	26	0	26	n	0.00	0	9	0	9	n	0.00	0	27	0	27	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.00	0	18	0	18	n	0.00	0	4	0	4	n	0.00	0	19	0	19	n	ENSMUSG00000018160.16	Med1	chr11	protein_coding	mediator complex subunit 1
known_NIR_3629	chr11	98136495	98140509	+	98136495	98140536	A3SS	ENSMUST00000107539.8	known	0.43	3	4	3	4	n	0.56	5	4	5	4	n	0.38	5	8	5	8	y	0.17	1	5	1	5	n	0.45	9	11	9	11	y	0.00	0	5	0	5	n	0.50	5	5	5	5	y	0.44	4	5	4	5	n	0.50	3	3	3	3	n	0.63	12	7	12	7	y	0.44	4	5	4	5	n	0.20	2	8	2	8	y	ENSMUSG00000003119.15	Cdk12	chr11	protein_coding	cyclin-dependent kinase 12
known_NIR_3630	chr11	98263168	98265830	+	98263168	98265906	A3SS	ENSMUST00000018311.5	known	0.05	2	40	2	40	y	0.00	0	41	0	41	n	0.06	3	44	3	44	y	0.00	0	62	0	62	n	0.00	0	64	0	64	n	0.00	0	16	0	16	n	0.02	1	61	1	61	n	0.00	0	15	0	15	n	0.03	1	32	1	32	n	0.00	0	67	0	67	n	0.07	4	51	4	51	y	0.00	0	47	0	47	n	ENSMUSG00000018167.11	Stard3	chr11	protein_coding	START domain containing 3
known_NIR_3631	chr11	98266366	98266501	+	98266379	98266501	A5SS	ENSMUST00000018311.5	known	0.08	2	24	2	24	y	0.18	5	23	5	23	y	0.08	3	35	3	35	y	0.06	2	33	2	33	y	0.00	0	49	0	49	n	0.17	2	10	2	10	y	0.10	5	44	5	44	y	0.11	3	25	3	25	y	0.00	0	14	0	14	n	0.02	1	44	1	44	n	0.06	2	34	2	34	y	0.11	4	31	4	31	y	ENSMUSG00000018167.11	Stard3	chr11	protein_coding	START domain containing 3
known_NIR_3632	chr11	98266554	98267324	+	98266554	98267316	A3SS	ENSMUST00000018311.5	known	0.00	0	24	0	24	n	0.00	0	27	0	27	n	0.00	0	25	0	25	n	0.00	0	35	0	35	n	0.00	0	42	0	42	n	0.00	0	8	0	8	n	0.00	0	36	0	36	n	0.00	0	24	0	24	n	0.00	0	16	0	16	n	0.07	2	25	2	25	y	0.00	0	28	0	28	n	0.08	3	36	3	36	y	ENSMUSG00000018167.11	Stard3	chr11	protein_coding	START domain containing 3
known_NIR_3633	chr11	98607351;98608591	98608535;98608736	-	98607351	98608736	cassetteExon	ENSMUST00000017354.13	known	0.00	0.0	12	0;0	12	n	0.07	1.0	13	1;1	13	n	0.20	3.5	14	2;5	14	y	0.06	1.0	17	2;0	17	n	0.02	0.5	32	0;1	32	n	0.00	0.0	16	0;0	16	n	0.03	0.5	18	1;0	18	n	0.05	1.0	18	0;2	18	n	0.10	1.0	9	1;1	9	n	0.02	0.5	23	0;1	23	n	0.06	1.0	16	0;2	16	n	0.10	1.5	13	0;3	13	n	ENSMUSG00000017210.15	Med24	chr11	protein_coding	mediator complex subunit 24
known_NIR_3634	chr11	98619523	98619604	-	98619523	98619611	A5SS	ENSMUST00000125064.8	known	0.07	1	14	1	14	n	0.00	0	12	0	12	n	0.07	2	27	2	27	y	0.00	0	13	0	13	n	0.00	0	23	0	23	n	0.00	0	19	0	19	n	0.00	0	23	0	23	n	0.00	0	16	0	16	n	0.00	0	16	0	16	n	0.00	0	14	0	14	n	0.00	0	25	0	25	n	0.00	0	23	0	23	n	ENSMUSG00000017210.15	Med24	chr11	protein_coding	mediator complex subunit 24
known_NIR_3635	chr11	98619813	98620130	-	98619813	98620198	A5SS	ENSMUST00000017354.13	known	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.40	6	9	6	9	y	0.18	2	9	2	9	y	0.06	1	16	1	16	n	0.46	6	7	6	7	y	0.38	3	5	3	5	n	0.17	2	10	2	10	y	0.25	3	9	3	9	y	0.07	1	13	1	13	n	0.33	4	8	4	8	y	0.17	2	10	2	10	y	ENSMUSG00000017210.15	Med24	chr11	protein_coding	mediator complex subunit 24
known_NIR_3636	chr11	98619813	98620207	-	98619813	98620130	5pMXE	ENSMUST00000138750.8	known	-	-	-	-	-	-	1.00	1	0	1	0	n	0.65	11	6	11	6	y	0.00	0	2	0	2	n	0.75	3	1	3	1	n	0.25	2	6	2	6	n	0.62	5	3	5	3	n	0.00	0	2	0	2	n	0.50	3	3	3	3	n	0.83	5	1	5	1	n	0.43	3	4	3	4	n	0.75	6	2	6	2	n	ENSMUSG00000017210.15	Med24	chr11	protein_coding	mediator complex subunit 24
known_NIR_3637	chr11	98619813	98620207	-	98619813	98620198	A5SS	ENSMUST00000017354.13	known	0.00	0	1	0	1	n	0.12	1	7	1	7	n	0.55	11	9	11	9	y	0.00	0	9	0	9	n	0.16	3	16	3	16	y	0.22	2	7	2	7	n	0.50	5	5	5	5	y	0.00	0	10	0	10	n	0.25	3	9	3	9	y	0.28	5	13	5	13	y	0.27	3	8	3	8	y	0.38	6	10	6	10	y	ENSMUSG00000017210.15	Med24	chr11	protein_coding	mediator complex subunit 24
known_NIR_3638	chr11	98632832	98644116	+	98632273	98644116	A5SS	ENSMUST00000124130.2	known	1.00	6	0	6	0	n	1.00	4	0	4	0	n	1.00	4	0	4	0	n	1.00	7	0	7	0	n	0.85	23	4	23	4	y	0.94	15	1	15	1	n	0.91	20	2	20	2	y	1.00	8	0	8	0	n	0.92	12	1	12	1	n	1.00	16	0	16	0	n	0.93	14	1	14	1	n	0.83	10	2	10	2	y	ENSMUSG00000058756.14	Thra	chr11	protein_coding	thyroid hormone receptor alpha
known_NIR_3639	chr11	98655231	98659100	+	98655231	98658983	A3SS	ENSMUST00000064187.12	known	0.28	7	18	7	18	y	0.19	3	13	3	13	y	0.11	2	16	2	16	y	0.10	2	18	2	18	y	0.00	0	26	0	26	n	0.17	2	10	2	10	y	0.13	6	41	6	41	y	0.00	0	5	0	5	n	0.00	0	18	0	18	n	0.08	2	22	2	22	y	0.00	0	13	0	13	n	0.00	0	16	0	16	n	ENSMUSG00000058756.14	Thra	chr11	protein_coding	thyroid hormone receptor alpha
known_NIR_3640	chr11	98691208	98693608	+	98691208;98693141	98693094;98693608	ES	ENSMUST00000037915.9	known	0.07	3	40.5	3	43;38	y	0.08	3	35.0	3	33;37	y	0.02	2	80.5	2	80;81	y	0.03	2	57.5	2	62;53	y	0.03	2	72.5	2	64;81	y	0.00	0	26.5	0	23;30	n	0.04	3	64.0	3	61;67	y	0.09	4	38.5	4	36;41	y	0.06	3	45.0	3	43;47	y	0.09	7	72.0	7	73;71	y	0.07	3	40.0	3	40;40	y	0.00	0	67.0	0	63;71	n	ENSMUSG00000052915.15	Msl1	chr11	protein_coding	male specific lethal 1
known_NIR_3641	chr11	98694796	98694906	+	98694796	98695128	A3SS	ENSMUST00000037915.9	known	0.00	0	77	0	77	n	0.00	0	43	0	43	n	0.02	2	91	2	91	y	0.00	0	63	0	63	n	0.00	0	84	0	84	n	0.00	0	32	0	32	n	0.02	2	87	2	87	y	0.00	0	41	0	41	n	0.00	0	60	0	60	n	0.02	2	99	2	99	y	0.00	0	54	0	54	n	0.01	1	86	1	86	n	ENSMUSG00000052915.15	Msl1	chr11	protein_coding	male specific lethal 1
known_NIR_3642	chr11	98701792	98712257	+	98701761	98712257	A5SS	ENSMUST00000017384.14	known	0.00	0	21	0	21	n	0.00	0	14	0	14	n	0.00	0	34	0	34	n	0.00	0	21	0	21	n	0.00	0	39	0	39	n	0.00	0	16	0	16	n	0.00	0	35	0	35	n	0.00	0	15	0	15	n	0.00	0	19	0	19	n	0.07	2	27	2	27	y	0.00	0	20	0	20	n	0.00	0	34	0	34	n	ENSMUSG00000078676.10	Casc3	chr11	protein_coding	cancer susceptibility candidate 3
known_NIR_3643	chr11	98851959	98857173	+	98841621	98857173	A5SS	ENSMUST00000107474.8	known	0.70	19	8	19	8	y	0.75	24	8	24	8	y	0.31	11	25	11	25	y	0.59	16	11	16	11	y	0.60	27	18	27	18	y	0.64	9	5	9	5	y	0.70	28	12	28	12	y	0.60	9	6	9	6	y	0.71	32	13	32	13	y	0.59	30	21	30	21	y	0.63	12	7	12	7	y	0.51	19	18	19	18	y	ENSMUSG00000037992.17	Rara	chr11	protein_coding	retinoic acid receptor, alpha
known_NIR_3644	chr11	98933328	98939052	+	98932671	98939052	A5SS	ENSMUST00000017637.13	known	0.00	1	4452	1	4452	n	0.00	1	4002	1	4002	n	0.00	9	3707	9	3707	y	0.00	2	5097	2	5097	y	0.00	11	5910	11	5910	y	0.00	5	2568	5	2568	y	0.00	9	5382	9	5382	y	0.00	5	2578	5	2578	y	0.00	3	3312	3	3312	y	0.00	6	5603	6	5603	y	0.00	6	3947	6	3947	y	0.00	0	4985	0	4985	n	ENSMUSG00000017493.13	Igfbp4	chr11	protein_coding	insulin-like growth factor binding protein 4
known_NIR_3645	chr11	98934450	98939052	+	98932671	98939052	A5SS	ENSMUST00000017637.13	known	0.01	63	4452	63	4452	y	0.01	49	4002	49	4002	y	0.01	51	3707	51	3707	y	0.01	64	5097	64	5097	y	0.02	91	5910	91	5910	y	0.01	28	2568	28	2568	y	0.01	71	5382	71	5382	y	0.01	33	2578	33	2578	y	0.01	42	3312	42	3312	y	0.01	54	5603	54	5603	y	0.01	53	3947	53	3947	y	0.02	83	4985	83	4985	y	ENSMUSG00000017493.13	Igfbp4	chr11	protein_coding	insulin-like growth factor binding protein 4
known_NIR_3646	chr11	98934450	98939052	+	98933328	98939052	A5SS	ENSMUST00000177105.2	known	0.98	63	1	63	1	n	0.98	49	1	49	1	n	0.85	51	9	51	9	y	0.97	64	2	64	2	y	0.89	91	11	91	11	y	0.85	28	5	28	5	y	0.89	71	9	71	9	y	0.87	33	5	33	5	y	0.93	42	3	42	3	y	0.90	54	6	54	6	y	0.90	53	6	53	6	y	1.00	83	0	83	0	n	ENSMUSG00000017493.13	Igfbp4	chr11	protein_coding	insulin-like growth factor binding protein 4
known_NIR_3647	chr11	98935738	98939052	+	98932671	98939052	A5SS	ENSMUST00000017637.13	known	0.00	5	4452	5	4452	y	0.00	1	4002	1	4002	n	0.00	5	3707	5	3707	y	0.00	0	5097	0	5097	n	0.00	5	5910	5	5910	y	0.00	0	2568	0	2568	n	0.00	0	5382	0	5382	n	0.00	2	2578	2	2578	y	0.00	2	3312	2	3312	y	0.00	4	5603	4	5603	y	0.00	8	3947	8	3947	y	0.00	6	4985	6	4985	y	ENSMUSG00000017493.13	Igfbp4	chr11	protein_coding	insulin-like growth factor binding protein 4
known_NIR_3648	chr11	98935738	98939052	+	98933328	98939052	A5SS	ENSMUST00000177105.2	known	0.83	5	1	5	1	n	0.50	1	1	1	1	n	0.36	5	9	5	9	y	0.00	0	2	0	2	n	0.31	5	11	5	11	y	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.29	2	5	2	5	n	0.40	2	3	2	3	n	0.40	4	6	4	6	y	0.57	8	6	8	6	y	1.00	6	0	6	0	n	ENSMUSG00000017493.13	Igfbp4	chr11	protein_coding	insulin-like growth factor binding protein 4
known_NIR_3649	chr11	98935738	98939052	+	98934450	98939052	A5SS	ENSMUST00000130530.8	known	0.07	5	63	5	63	y	0.02	1	49	1	49	n	0.09	5	51	5	51	y	0.00	0	64	0	64	n	0.05	5	91	5	91	y	0.00	0	28	0	28	n	0.00	0	71	0	71	n	0.06	2	33	2	33	y	0.05	2	42	2	42	y	0.07	4	54	4	54	y	0.13	8	53	8	53	y	0.07	6	83	6	83	y	ENSMUSG00000017493.13	Igfbp4	chr11	protein_coding	insulin-like growth factor binding protein 4
known_NIR_3650	chr11	98938229	98939052	+	98932671	98939052	A5SS	ENSMUST00000017637.13	known	0.00	4	4452	4	4452	y	0.00	2	4002	2	4002	y	0.00	14	3707	14	3707	y	0.00	5	5097	5	5097	y	0.00	7	5910	7	5910	y	0.00	4	2568	4	2568	y	0.00	4	5382	4	5382	y	0.00	6	2578	6	2578	y	0.00	8	3312	8	3312	y	0.00	14	5603	14	5603	y	0.00	12	3947	12	3947	y	0.00	4	4985	4	4985	y	ENSMUSG00000017493.13	Igfbp4	chr11	protein_coding	insulin-like growth factor binding protein 4
known_NIR_3651	chr11	98938229	98939052	+	98933328	98939052	A5SS	ENSMUST00000177105.2	known	0.80	4	1	4	1	n	0.67	2	1	2	1	n	0.61	14	9	14	9	y	0.71	5	2	5	2	n	0.39	7	11	7	11	y	0.44	4	5	4	5	n	0.31	4	9	4	9	y	0.55	6	5	6	5	y	0.73	8	3	8	3	y	0.70	14	6	14	6	y	0.67	12	6	12	6	y	1.00	4	0	4	0	n	ENSMUSG00000017493.13	Igfbp4	chr11	protein_coding	insulin-like growth factor binding protein 4
known_NIR_3652	chr11	98938229	98939052	+	98934450	98939052	A5SS	ENSMUST00000130530.8	known	0.06	4	63	4	63	y	0.04	2	49	2	49	y	0.22	14	51	14	51	y	0.07	5	64	5	64	y	0.07	7	91	7	91	y	0.12	4	28	4	28	y	0.05	4	71	4	71	y	0.15	6	33	6	33	y	0.16	8	42	8	42	y	0.21	14	54	14	54	y	0.18	12	53	12	53	y	0.05	4	83	4	83	y	ENSMUSG00000017493.13	Igfbp4	chr11	protein_coding	insulin-like growth factor binding protein 4
known_NIR_3653	chr11	98938229	98939052	+	98935738	98939052	A5SS	ENSMUST00000123946.2	known	0.44	4	5	4	5	n	0.67	2	1	2	1	n	0.74	14	5	14	5	y	1.00	5	0	5	0	n	0.58	7	5	7	5	y	1.00	4	0	4	0	n	1.00	4	0	4	0	n	0.75	6	2	6	2	n	0.80	8	2	8	2	y	0.78	14	4	14	4	y	0.60	12	8	12	8	y	0.40	4	6	4	6	y	ENSMUSG00000017493.13	Igfbp4	chr11	protein_coding	insulin-like growth factor binding protein 4
known_NIR_3654	chr11	98939197	98942271	+	98939197;98940054	98939920;98942271	ES	ENSMUST00000017637.13	known	0.00	1	4367.0	1	3847;4887	n	0.00	2	4239.0	2	3584;4894	y	0.00	0	3671.5	0	3231;4112	n	0.00	2	5046.5	2	4353;5740	y	0.00	1	5952.5	1	5210;6695	n	0.00	2	2518.0	2	2267;2769	y	0.00	0	5329.5	0	4689;5970	n	0.00	1	2733.5	1	2322;3145	n	0.00	0	3315.5	0	2868;3763	n	0.00	4	5625.5	4	4908;6343	y	0.00	1	4012.0	1	3528;4496	n	0.00	2	4990.5	2	4297;5684	y	ENSMUSG00000017493.13	Igfbp4	chr11	protein_coding	insulin-like growth factor binding protein 4
known_NIR_3655	chr11	99111561	99115547	-	99111561	99115864	A5SS	ENSMUST00000103133.4	known	0.00	0	66	0	66	n	0.00	0	60	0	60	n	0.00	0	73	0	73	n	0.00	0	85	0	85	n	0.02	2	95	2	95	y	0.00	0	46	0	46	n	0.00	0	72	0	72	n	0.00	0	45	0	45	n	0.00	0	56	0	56	n	0.00	0	72	0	72	n	0.00	0	65	0	65	n	0.00	0	75	0	75	n	ENSMUSG00000037935.17	Smarce1	chr11	protein_coding	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
known_NIR_3656	chr11	99276462	99276737	-	99276462	99276757	A5SS	ENSMUST00000103131.5	known	0.11	2	17	2	17	y	0.04	1	22	1	22	n	0.00	0	12	0	12	n	0.00	0	17	0	17	n	0.11	2	16	2	16	y	0.25	1	3	1	3	n	0.23	6	20	6	20	y	0.00	0	12	0	12	n	0.12	3	23	3	23	y	0.12	5	36	5	36	y	0.14	3	19	3	19	y	0.16	3	16	3	16	y	ENSMUSG00000019761.11	Krt10	chr11	protein_coding	keratin 10
known_NIR_3657	chr12	100076762	100078590	+	100076470	100078590	A5SS	ENSMUST00000222374.2	known	0.01	1	93	1	93	n	0.00	0	85	0	85	n	0.00	0	116	0	116	n	0.00	0	107	0	107	n	0.01	2	151	2	151	y	0.00	0	51	0	51	n	0.06	8	127	8	127	y	0.03	2	56	2	56	y	0.02	2	85	2	85	y	0.00	0	145	0	145	n	0.02	2	83	2	83	y	0.00	0	123	0	123	n	ENSMUSG00000021178.10	Psmc1	chr12	protein_coding	protease (prosome, macropain) 26S subunit, ATPase 1
known_NIR_3658	chr12	100081221	100081679	+	100081221	100081728	A3SS	ENSMUST00000222374.2	known	0.98	281	7	281	7	y	1.00	232	0	232	0	n	0.98	369	9	369	9	y	1.00	330	0	330	0	n	0.97	398	13	398	13	y	0.96	165	6	165	6	y	1.00	377	0	377	0	n	1.00	170	0	170	0	n	1.00	255	0	255	0	n	0.97	446	14	446	14	y	1.00	275	0	275	0	n	1.00	410	0	410	0	n	ENSMUSG00000021178.10	Psmc1	chr12	protein_coding	protease (prosome, macropain) 26S subunit, ATPase 1
known_NIR_3659	chr12	100116309	100117485	-	100116309	100117470	A5SS	ENSMUST00000021596.9	known	0.22	4	14	4	14	y	0.25	2	6	2	6	n	0.56	9	7	9	7	y	0.14	3	18	3	18	y	0.17	3	15	3	15	y	0.43	6	8	6	8	y	0.38	8	13	8	13	y	0.29	4	10	4	10	y	0.10	1	9	1	9	n	0.20	4	16	4	16	y	0.50	4	4	4	4	n	0.27	3	8	3	8	y	ENSMUSG00000021179.9	Nrde2	chr12	protein_coding	nrde-2 necessary for RNA interference, domain containing
known_NIR_3660	chr12	100155063	100155150	+	100154606	100155150	A5SS	ENSMUST00000146364.8	known	0.00	0	2	0	2	n	-	-	-	-	-	-	0.15	2	11	2	11	y	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.08	1	12	1	12	n	0.17	1	5	1	5	n	0.14	1	6	1	6	n	0.00	0	7	0	7	n	0.40	2	3	2	3	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	ENSMUSG00000072884.11	Gm10433	chr12	lncRNA	predicted gene 10433
known_NIR_3661	chr12	100298978	100304201	-	100298978	100314195	A5SS	ENSMUST00000062957.8	known	0.00	0	24	0	24	n	0.00	0	19	0	19	n	0.00	0	25	0	25	n	0.00	0	22	0	22	n	0.00	0	22	0	22	n	0.00	0	13	0	13	n	0.00	0	31	0	31	n	0.00	0	10	0	10	n	0.00	0	28	0	28	n	0.00	0	42	0	42	n	0.06	2	34	2	34	y	0.00	0	30	0	30	n	ENSMUSG00000033530.9	Ttc7b	chr12	protein_coding	tetratricopeptide repeat domain 7B
known_NIR_3662	chr12	100310252	100314195	-	100298978	100314195	A3SS	ENSMUST00000062957.8	known	0.00	0	24	0	24	n	0.00	0	19	0	19	n	0.00	0	25	0	25	n	0.00	0	22	0	22	n	0.00	0	22	0	22	n	0.00	0	13	0	13	n	0.21	8	31	8	31	y	0.00	0	10	0	10	n	0.00	0	28	0	28	n	0.00	0	42	0	42	n	0.00	0	34	0	34	n	0.00	0	30	0	30	n	ENSMUSG00000033530.9	Ttc7b	chr12	protein_coding	tetratricopeptide repeat domain 7B
known_NIR_3663	chr12	100745569	100752397	+	100745569	100795858	A3SS	ENSMUST00000069782.11	known	0.12	4	30	4	30	y	0.20	4	16	4	16	y	0.17	3	15	3	15	y	0.09	5	51	5	51	y	0.12	4	29	4	29	y	0.19	3	13	3	13	y	0.10	2	18	2	18	y	0.00	0	32	0	32	n	0.03	1	32	1	32	n	0.06	4	64	4	64	y	0.08	2	22	2	22	y	0.10	4	35	4	35	y	ENSMUSG00000021185.17	Dglucy	chr12	protein_coding	D-glutamate cyclase
known_NIR_3664	chr12	100745569	100753875	+	100745569;100752505	100752397;100753875	ES	ENSMUST00000110073.8	known	0.40	2	3.0	2	4;2	n	0.00	0	2.0	0	4;0	n	0.44	2	2.5	2	3;2	n	0.79	11	3.0	11	5;1	n	0.33	2	4.0	2	4;4	y	0.00	0	2.5	0	3;2	n	0.57	4	3.0	4	2;4	y	0.86	3	0.5	3	0;1	n	0.67	3	1.5	3	1;2	n	0.55	6	5.0	6	4;6	y	0.75	6	2.0	6	2;2	y	0.44	2	2.5	2	4;1	n	ENSMUSG00000021185.17	Dglucy	chr12	protein_coding	D-glutamate cyclase
known_NIR_3665	chr12	100745569	100753875	+	100752505	100753875	5pMXE	ENSMUST00000167322.2	known	0.50	2	2	2	2	n	-	-	-	-	-	-	0.50	2	2	2	2	n	0.92	11	1	11	1	n	0.33	2	4	2	4	n	0.00	0	2	0	2	n	0.50	4	4	4	4	n	0.75	3	1	3	1	n	0.60	3	2	3	2	n	0.50	6	6	6	6	y	0.75	6	2	6	2	n	0.67	2	1	2	1	n	ENSMUSG00000021185.17	Dglucy	chr12	protein_coding	D-glutamate cyclase
known_NIR_3666	chr12	100745569;100753931	100753875;100795858	+	100745569	100795858	cassetteExon	ENSMUST00000069782.11	known	0.08	2.5	30	2;3	30	y	0.06	1.0	16	0;2	16	n	0.06	1.0	15	2;0	15	n	0.18	11.5	51	11;12	51	y	0.11	3.5	29	2;5	29	y	0.10	1.5	13	0;3	13	n	0.20	4.5	18	4;5	18	y	0.11	4.0	32	3;5	32	y	0.10	3.5	32	3;4	32	y	0.11	8.0	64	6;10	64	y	0.23	6.5	22	6;7	22	y	0.05	2.0	35	2;2	35	y	ENSMUSG00000021185.17	Dglucy	chr12	protein_coding	D-glutamate cyclase
known_NIR_3667	chr12	100795984	100804759	+	100795984;100801594	100801444;100804759	ES	ENSMUST00000069782.11	known	0.00	0	33.5	0	33;34	n	0.05	1	18.5	1	14;23	n	0.00	0	17.5	0	20;15	n	0.05	3	54.5	3	51;58	y	0.00	0	38.0	0	25;51	n	0.00	0	15.5	0	17;14	n	0.02	1	44.0	1	46;42	n	0.00	0	20.5	0	21;20	n	0.00	0	47.5	0	46;49	n	0.06	4	58.5	4	65;52	y	0.04	1	24.5	1	31;18	n	0.08	4	49.0	4	44;54	y	ENSMUSG00000021185.17	Dglucy	chr12	protein_coding	D-glutamate cyclase
known_NIR_3668	chr12	101008310	101008738	-	101008310	101008714	A5SS	ENSMUST00000048305.10	known	0.00	0	112	0	112	n	0.00	0	90	0	90	n	0.02	2	105	2	105	y	0.02	2	84	2	84	y	0.01	1	181	1	181	n	0.00	0	54	0	54	n	0.00	0	116	0	116	n	0.01	1	76	1	76	n	0.04	3	72	3	72	y	0.00	0	119	0	119	n	0.00	0	102	0	102	n	0.01	2	135	2	135	y	ENSMUSG00000041846.16	Ppp4r3a	chr12	protein_coding	protein phosphatase 4 regulatory subunit 3A
known_NIR_3669	chr12	101010918;101011940	101011785;101015919	-	101010918	101015919	cassetteExon	ENSMUST00000048305.10	known	0.17	13.5	65	21;6	65	y	0.21	11.5	44	14;9	44	y	0.19	12.0	51	17;7	51	y	0.16	8.5	44	10;7	44	y	0.21	21.0	79	31;11	79	y	0.23	10.5	36	14;7	36	y	0.23	23.0	75	28;18	75	y	0.25	9.5	29	10;9	29	y	0.13	7.5	50	9;6	50	y	0.22	15.0	54	19;11	54	y	0.13	7.0	46	6;8	46	y	0.18	19.0	88	20;18	88	y	ENSMUSG00000041846.16	Ppp4r3a	chr12	protein_coding	protein phosphatase 4 regulatory subunit 3A
known_NIR_3670	chr12	101017921	101019688	-	101017921	101019727	A5SS	ENSMUST00000048305.10	known	0.25	18	54	18	54	y	0.10	4	37	4	37	y	0.51	34	33	34	33	y	0.27	16	44	16	44	y	0.20	22	90	22	90	y	0.13	6	40	6	40	y	0.12	8	58	8	58	y	0.17	7	34	7	34	y	0.32	10	21	10	21	y	0.24	13	42	13	42	y	0.23	10	33	10	33	y	0.33	31	62	31	62	y	ENSMUSG00000041846.16	Ppp4r3a	chr12	protein_coding	protein phosphatase 4 regulatory subunit 3A
known_NIR_3671	chr12	101030995	101031243	-	101025200	101031243	A3SS	ENSMUST00000048305.10	known	0.00	0	41	0	41	n	0.00	0	24	0	24	n	0.04	2	49	2	49	y	0.00	0	65	0	65	n	0.02	2	98	2	98	y	0.00	0	31	0	31	n	0.00	0	54	0	54	n	0.00	0	38	0	38	n	0.00	0	43	0	43	n	0.00	0	64	0	64	n	0.00	0	32	0	32	n	0.02	2	87	2	87	y	ENSMUSG00000041846.16	Ppp4r3a	chr12	protein_coding	protein phosphatase 4 regulatory subunit 3A
known_NIR_3672	chr12	101050284	101054301	+	101050758	101054301	A5SS	ENSMUST00000220889.2	known	0.09	6	64	6	64	y	0.20	16	66	16	66	y	0.26	12	35	12	35	y	0.12	7	52	7	52	y	0.16	13	69	13	69	y	0.30	10	23	10	23	y	0.15	15	84	15	84	y	0.18	7	32	7	32	y	0.09	8	83	8	83	y	0.19	17	71	17	71	y	0.15	19	109	19	109	y	0.14	13	79	13	79	y	ENSMUSG00000097121.3	D130020L05Rik	chr12	lncRNA	RIKEN cDNA D130020L05 gene
known_NIR_3673	chr12	101050284;101050758	101050543;101054301	+	101050284	101054301	cassetteExon	ENSMUST00000180800.2	known	0.91	63.0	6	62;64	6	y	0.78	56.5	16	47;66	16	y	0.69	27.0	12	19;35	12	y	0.87	46.0	7	40;52	7	y	0.84	69.5	13	70;69	13	y	0.67	20.0	10	17;23	10	y	0.85	87.0	15	90;84	15	y	0.82	32.5	7	33;32	7	y	0.90	70.0	8	57;83	8	y	0.82	80.0	17	89;71	17	y	0.83	92.5	19	76;109	19	y	0.85	76.0	13	73;79	13	y	ENSMUSG00000097121.3	D130020L05Rik	chr12	lncRNA	RIKEN cDNA D130020L05 gene
known_NIR_3674	chr12	101050758;101052611	101052447;101054301	+	101050758	101054301	cassetteExon	ENSMUST00000221614.2	known	0.02	1.5	64	1;2	64	n	0.03	2.0	66	2;2	66	y	0.01	0.5	35	0;1	35	n	0.02	1.0	52	1;1	52	n	0.04	3.0	69	5;1	69	n	0.04	1.0	23	0;2	23	n	0.02	2.0	84	2;2	84	y	0.04	1.5	32	0;3	32	n	0.04	3.5	83	5;2	83	y	0.07	5.0	71	8;2	71	y	0.04	4.0	109	3;5	109	y	0.01	0.5	79	0;1	79	n	ENSMUSG00000097121.3	D130020L05Rik	chr12	lncRNA	RIKEN cDNA D130020L05 gene
known_NIR_3675	chr12	101052611	101054301	+	101050284	101054301	A5SS	ENSMUST00000180800.2	known	0.25	2	6	2	6	n	0.11	2	16	2	16	y	0.08	1	12	1	12	n	0.12	1	7	1	7	n	0.07	1	13	1	13	n	0.17	2	10	2	10	y	0.12	2	15	2	15	y	0.30	3	7	3	7	y	0.20	2	8	2	8	y	0.11	2	17	2	17	y	0.21	5	19	5	19	y	0.07	1	13	1	13	n	ENSMUSG00000097121.3	D130020L05Rik	chr12	lncRNA	RIKEN cDNA D130020L05 gene
known_NIR_3676	chr12	101845151	101849515	-	101845188	101849515	A3SS	ENSMUST00000021605.14	known	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.07	2	27	2	27	y	0.06	1	17	1	17	n	0.06	2	29	2	29	y	0.00	0	19	0	19	n	0.29	9	22	9	22	y	0.00	0	22	0	22	n	0.07	1	14	1	14	n	0.00	0	20	0	20	n	0.00	0	14	0	14	n	0.00	0	22	0	22	n	ENSMUSG00000021188.15	Trip11	chr12	protein_coding	thyroid hormone receptor interactor 11
known_NIR_3677	chr12	101872072	101878949	-	101872075	101878949	A3SS	ENSMUST00000021605.14	known	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.45	5	6	5	6	y	0.00	0	4	0	4	n	0.50	4	4	4	4	n	0.22	2	7	2	7	n	0.00	0	3	0	3	n	0.67	6	3	6	3	n	0.00	0	1	0	1	n	0.62	5	3	5	3	n	0.00	0	1	0	1	n	0.00	0	12	0	12	n	ENSMUSG00000021188.15	Trip11	chr12	protein_coding	thyroid hormone receptor interactor 11
known_NIR_3678	chr12	101914304	101914534	-	101914307	101914534	A3SS	ENSMUST00000021606.12	known	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.23	5	17	5	17	y	0.00	0	10	0	10	n	0.24	5	16	5	16	y	0.17	2	10	2	10	y	0.27	3	8	3	8	y	0.19	3	13	3	13	y	0.00	0	6	0	6	n	0.13	3	20	3	20	y	0.00	0	4	0	4	n	0.13	2	13	2	13	y	ENSMUSG00000021189.12	Atxn3	chr12	protein_coding	ataxin 3
known_NIR_3679	chr12	101935893	101941919	-	101935896	101941919	A3SS	ENSMUST00000221422.2	known	0.19	149	628	149	628	y	0.24	192	596	192	596	y	0.18	132	601	132	601	y	0.19	152	649	152	649	y	0.20	192	745	192	745	y	0.19	77	329	77	329	y	0.20	202	810	202	810	y	0.23	99	329	99	329	y	0.22	155	564	155	564	y	0.20	220	864	220	864	y	0.19	171	720	171	720	y	0.21	190	728	190	728	y	ENSMUSG00000113902.2	Ndufb1	chr12	protein_coding	NADH:ubiquinone oxidoreductase subunit B1
known_NIR_3680	chr12	101935896	101943043	-	101935896	101941919	5pMXE	ENSMUST00000221422.2	known	0.00	0	628	0	628	n	0.00	0	596	0	596	n	0.00	0	601	0	601	n	0.00	0	649	0	649	n	0.00	0	745	0	745	n	0.00	0	329	0	329	n	0.00	0	810	0	810	n	0.00	0	329	0	329	n	0.00	0	564	0	564	n	0.00	0	864	0	864	n	0.00	0	720	0	720	n	0.00	2	728	2	728	y	ENSMUSG00000113902.2	Ndufb1	chr12	protein_coding	NADH:ubiquinone oxidoreductase subunit B1
known_NIR_3681	chr12	102292171	102292593	+	102292171	102317141	A3SS	ENSMUST00000056950.14	known	0.13	3	20	3	20	y	0.00	0	20	0	20	n	0.00	0	16	0	16	n	0.04	1	23	1	23	n	0.04	1	25	1	25	n	0.14	2	12	2	12	y	0.11	3	25	3	25	y	0.14	2	12	2	12	y	0.00	0	25	0	25	n	0.03	1	30	1	30	n	0.06	1	15	1	15	n	0.05	1	20	1	20	n	ENSMUSG00000044456.17	Rin3	chr12	protein_coding	Ras and Rab interactor 3
known_NIR_3682	chr12	102321173	102324964	+	102317213	102324964	A5SS	ENSMUST00000056950.14	known	0.04	1	27	1	27	n	0.06	1	17	1	17	n	0.10	2	18	2	18	y	0.05	2	37	2	37	y	0.00	0	34	0	34	n	0.00	0	15	0	15	n	0.06	2	29	2	29	y	0.00	0	11	0	11	n	0.00	0	17	0	17	n	0.00	0	45	0	45	n	0.14	3	19	3	19	y	0.00	0	21	0	21	n	ENSMUSG00000044456.17	Rin3	chr12	protein_coding	Ras and Rab interactor 3
known_NIR_3683	chr12	102325055	102327585	+	102325055	102334623	A3SS	ENSMUST00000056950.14	known	0.00	0	18	0	18	n	0.10	2	18	2	18	y	0.00	0	18	0	18	n	0.00	0	23	0	23	n	0.00	0	39	0	39	n	0.00	0	11	0	11	n	0.00	0	31	0	31	n	0.00	0	15	0	15	n	0.00	0	15	0	15	n	0.00	0	43	0	43	n	0.00	0	21	0	21	n	0.00	0	21	0	21	n	ENSMUSG00000044456.17	Rin3	chr12	protein_coding	Ras and Rab interactor 3
known_NIR_3684	chr12	102436240	102438257	+	102435622	102438257	A5SS	ENSMUST00000179218.9	known	0.05	1	21	1	21	n	0.07	1	13	1	13	n	0.00	0	33	0	33	n	0.00	0	27	0	27	n	0.03	1	38	1	38	n	0.13	5	34	5	34	y	0.04	1	26	1	26	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	26	0	26	n	0.00	0	16	0	16	n	0.00	0	21	0	21	n	ENSMUSG00000021192.17	Golga5	chr12	protein_coding	golgi autoantigen, golgin subfamily a, 5
known_NIR_3685	chr12	102641726	102661970	-	102641726	102670981	A5SS	ENSMUST00000046518.12	known	0.10	2	19	2	19	y	0.00	0	10	0	10	n	0.12	2	14	2	14	y	0.00	0	28	0	28	n	0.00	0	28	0	28	n	0.38	5	8	5	8	y	0.06	1	15	1	15	n	0.09	1	10	1	10	n	0.00	0	31	0	31	n	0.00	0	31	0	31	n	0.04	1	24	1	24	n	0.03	1	30	1	30	n	ENSMUSG00000057963.10	Itpk1	chr12	protein_coding	inositol 1,3,4-triphosphate 5/6 kinase
known_NIR_3686	chr12	102709653	102709758	-	102709653	102723800	A5SS	ENSMUST00000174651.2	known	0.33	1	2	1	2	n	0.20	1	4	1	4	n	0.15	2	11	2	11	y	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.44	4	5	4	5	n	0.00	0	13	0	13	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.09	1	10	1	10	n	ENSMUSG00000041716.8	Gm20604	chr12	protein_coding	predicted gene 20604
known_NIR_3687	chr12	102709653	102709802	-	102709653	102709758	A5SS	ENSMUST00000173760.9	known	0.83	5	1	5	1	n	0.75	3	1	3	1	n	0.88	15	2	15	2	y	0.80	4	1	4	1	n	1.00	5	0	5	0	n	0.33	2	4	2	4	n	1.00	4	0	4	0	n	1.00	4	0	4	0	n	1.00	3	0	3	0	n	1.00	3	0	3	0	n	1.00	3	0	3	0	n	0.50	1	1	1	1	n	ENSMUSG00000096458.8	Moap1	chr12	protein_coding	modulator of apoptosis 1
known_NIR_3688	chr12	102709653	102709802	-	102709653	102723800	A5SS	ENSMUST00000174651.2	known	0.71	5	2	5	2	n	0.43	3	4	3	4	n	0.58	15	11	15	11	y	0.44	4	5	4	5	n	0.50	5	5	5	5	y	0.29	2	5	2	5	n	0.24	4	13	4	13	y	0.67	4	2	4	2	n	1.00	3	0	3	0	n	0.33	3	6	3	6	n	0.60	3	2	3	2	n	0.09	1	10	1	10	n	ENSMUSG00000041716.8	Gm20604	chr12	protein_coding	predicted gene 20604
known_NIR_3689	chr12	102720425	102723800	-	102709653	102723800	A3SS	ENSMUST00000174651.2	known	0.91	20	2	20	2	y	0.83	20	4	20	4	y	0.76	34	11	34	11	y	0.76	16	5	16	5	y	0.84	26	5	26	5	y	0.71	12	5	12	5	y	0.67	26	13	26	13	y	0.71	5	2	5	2	n	1.00	13	0	13	0	n	0.80	24	6	24	6	y	0.93	25	2	25	2	y	0.72	26	10	26	10	y	ENSMUSG00000041716.8	Gm20604	chr12	protein_coding	predicted gene 20604
known_NIR_3690	chr12	102722801	102723800	-	102720425	102723800	A3SS	ENSMUST00000173969.2	known	0.17	4	20	4	20	y	0.00	0	20	0	20	n	0.00	0	34	0	34	n	0.00	0	16	0	16	n	0.00	0	26	0	26	n	0.08	1	12	1	12	n	0.00	0	26	0	26	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.00	0	24	0	24	n	0.07	2	25	2	25	y	0.00	0	26	0	26	n	ENSMUSG00000091931.6	Gon7	chr12	protein_coding	GON7 subunit of KEOPS complex
known_NIR_3691	chr12	103390856	103391785	-	103390856	103392038	A5SS	ENSMUST00000044923.15	known	0.00	0	37	0	37	n	0.03	1	32	1	32	n	0.02	1	60	1	60	n	0.00	0	39	0	39	n	0.00	0	60	0	60	n	0.00	0	32	0	32	n	0.04	2	45	2	45	y	0.03	1	32	1	32	n	0.00	0	24	0	24	n	0.00	0	46	0	46	n	0.03	1	34	1	34	n	0.07	2	28	2	28	y	ENSMUSG00000041645.15	Ddx24	chr12	protein_coding	DEAD box helicase 24
known_NIR_3692	chr12	103401832	103405660	+	103401832	103402822	3pMXE	ENSMUST00000148824.2	known	0.01	3	286	3	286	y	0.01	2	306	2	306	y	0.02	10	470	10	470	y	0.01	3	431	3	431	y	0.01	4	372	4	372	y	0.03	5	195	5	195	y	0.01	3	389	3	389	y	0.00	0	211	0	211	n	0.01	4	346	4	346	y	0.00	2	426	2	426	y	0.00	1	292	1	292	n	0.00	0	348	0	348	n	ENSMUSG00000064215.14	Ifi27	chr12	protein_coding	interferon, alpha-inducible protein 27
known_NIR_3693	chr12	103401832;103402941	103402822;103405660	+	103401832	103405660	cassetteExon	ENSMUST00000076788.12	known	0.98	143.0	3	286;0	3	n	0.99	153.0	2	306;0	2	n	0.96	240.0	10	470;10	10	y	0.99	218.0	3	431;5	3	y	0.98	186.0	4	372;0	4	n	0.95	99.0	5	195;3	5	y	0.98	196.0	3	389;3	3	y	1.00	107.0	0	211;3	0	n	0.98	174.0	4	346;2	4	y	0.99	213.0	2	426;0	2	n	0.99	147.0	1	292;2	1	n	1.00	174.0	0	348;0	0	n	ENSMUSG00000064215.14	Ifi27	chr12	protein_coding	interferon, alpha-inducible protein 27
known_NIR_3694	chr12	103402941	103403709	+	103402941	103403649	A3SS	ENSMUST00000079294.12	known	0.14	20	118	20	118	y	0.18	25	114	25	114	y	0.17	34	165	34	165	y	0.16	29	150	29	150	y	0.18	28	126	28	126	y	0.20	16	66	16	66	y	0.10	20	184	20	184	y	0.15	13	75	13	75	y	0.10	15	135	15	135	y	0.13	26	167	26	167	y	0.17	18	91	18	91	y	0.13	23	153	23	153	y	ENSMUSG00000064215.14	Ifi27	chr12	protein_coding	interferon, alpha-inducible protein 27
known_NIR_3695	chr12	103402941	103403935	+	103402941	103403649	3pMXE	ENSMUST00000122905.8	known	0.60	175	118	175	118	y	0.60	168	114	168	114	y	0.58	227	165	227	165	y	0.60	224	150	224	150	y	0.61	194	126	194	126	y	0.64	118	66	118	66	y	0.51	191	184	191	184	y	0.53	85	75	85	75	y	0.54	161	135	161	135	y	0.56	210	167	210	167	y	0.59	130	91	130	91	y	0.48	142	153	142	153	y	ENSMUSG00000064215.14	Ifi27	chr12	protein_coding	interferon, alpha-inducible protein 27
known_NIR_3696	chr12	103402941	103403935	+	103402941	103403709	3pMXE	ENSMUST00000140838.2	known	0.90	175	20	175	20	y	0.87	168	25	168	25	y	0.87	227	34	227	34	y	0.89	224	29	224	29	y	0.87	194	28	194	28	y	0.88	118	16	118	16	y	0.91	191	20	191	20	y	0.87	85	13	85	13	y	0.91	161	15	161	15	y	0.89	210	26	210	26	y	0.88	130	18	130	18	y	0.86	142	23	142	23	y	ENSMUSG00000064215.14	Ifi27	chr12	protein_coding	interferon, alpha-inducible protein 27
known_NIR_3697	chr12	103402941	103405660	+	103402941	103403649	3pMXE	ENSMUST00000122905.8	known	0.00	0	118	0	118	n	0.00	0	114	0	114	n	0.06	10	165	10	165	y	0.03	5	150	5	150	y	0.00	0	126	0	126	n	0.04	3	66	3	66	y	0.02	3	184	3	184	y	0.04	3	75	3	75	y	0.01	2	135	2	135	y	0.00	0	167	0	167	n	0.02	2	91	2	91	y	0.00	0	153	0	153	n	ENSMUSG00000064215.14	Ifi27	chr12	protein_coding	interferon, alpha-inducible protein 27
known_NIR_3698	chr12	103402941	103405660	+	103402941	103403709	3pMXE	ENSMUST00000140838.2	known	0.00	0	20	0	20	n	0.00	0	25	0	25	n	0.23	10	34	10	34	y	0.15	5	29	5	29	y	0.00	0	28	0	28	n	0.16	3	16	3	16	y	0.13	3	20	3	20	y	0.19	3	13	3	13	y	0.12	2	15	2	15	y	0.00	0	26	0	26	n	0.10	2	18	2	18	y	0.00	0	23	0	23	n	ENSMUSG00000064215.14	Ifi27	chr12	protein_coding	interferon, alpha-inducible protein 27
known_NIR_3699	chr12	103402941	103405660	+	103403964	103405660	5pMXE	ENSMUST00000153670.2	known	0.00	0	378	0	378	n	0.00	0	312	0	312	n	0.02	10	457	10	457	y	0.01	5	432	5	432	y	0.00	0	395	0	395	n	0.01	3	208	3	208	y	0.01	3	408	3	408	y	0.02	3	157	3	157	y	0.01	2	306	2	306	y	0.00	0	445	0	445	n	0.01	2	260	2	260	y	0.00	0	313	0	313	n	ENSMUSG00000064215.14	Ifi27	chr12	protein_coding	interferon, alpha-inducible protein 27
known_NIR_3700	chr12	103402941;103403783	103403649;103403935	+	103402941	103403935	cassetteExon	ENSMUST00000066701.13	known	0.43	129.5	175	118;141	175	y	0.41	115.0	168	114;116	168	y	0.43	171.5	227	165;178	227	y	0.41	152.5	224	150;155	224	y	0.39	122.5	194	126;119	194	y	0.37	69.0	118	66;72	118	y	0.47	168.0	191	184;152	191	y	0.45	69.5	85	75;64	85	y	0.43	121.0	161	135;107	161	y	0.43	158.5	210	167;150	210	y	0.41	91.0	130	91;91	130	y	0.49	139.0	142	153;125	142	y	ENSMUSG00000064215.14	Ifi27	chr12	protein_coding	interferon, alpha-inducible protein 27
known_NIR_3701	chr12	103402941;103403783	103403709;103403935	+	103402941	103403935	cassetteExon	ENSMUST00000066701.13	known	0.32	80.5	175	20;141	175	y	0.30	70.5	168	25;116	168	y	0.32	106.0	227	34;178	227	y	0.29	92.0	224	29;155	224	y	0.27	73.5	194	28;119	194	y	0.27	44.0	118	16;72	118	y	0.31	86.0	191	20;152	191	y	0.31	38.5	85	13;64	85	y	0.27	61.0	161	15;107	161	y	0.30	88.0	210	26;150	210	y	0.30	54.5	130	18;91	130	y	0.34	74.0	142	23;125	142	y	ENSMUSG00000064215.14	Ifi27	chr12	protein_coding	interferon, alpha-inducible protein 27
known_NIR_3702	chr12	103402941;103403964	103403649;103405660	+	103402941	103405660	cassetteExon	ENSMUST00000076702.12	known	1.00	248.0	0	118;378	0	n	1.00	213.0	0	114;312	0	n	0.97	311.0	10	165;457	10	y	0.98	291.0	5	150;432	5	y	1.00	260.5	0	126;395	0	n	0.98	137.0	3	66;208	3	y	0.99	296.0	3	184;408	3	y	0.97	116.0	3	75;157	3	y	0.99	220.5	2	135;306	2	y	1.00	306.0	0	167;445	0	n	0.99	175.5	2	91;260	2	y	1.00	233.0	0	153;313	0	n	ENSMUSG00000064215.14	Ifi27	chr12	protein_coding	interferon, alpha-inducible protein 27
known_NIR_3703	chr12	103402941;103403964	103403709;103405660	+	103402941	103405660	cassetteExon	ENSMUST00000076702.12	known	1.00	199.0	0	20;378	0	n	1.00	168.5	0	25;312	0	n	0.96	245.5	10	34;457	10	y	0.98	230.5	5	29;432	5	y	1.00	211.5	0	28;395	0	n	0.97	112.0	3	16;208	3	y	0.99	214.0	3	20;408	3	y	0.97	85.0	3	13;157	3	y	0.99	160.5	2	15;306	2	y	1.00	235.5	0	26;445	0	n	0.99	139.0	2	18;260	2	y	1.00	168.0	0	23;313	0	n	ENSMUSG00000064215.14	Ifi27	chr12	protein_coding	interferon, alpha-inducible protein 27
known_NIR_3704	chr12	103402941;103403964	103403935;103405660	+	103402941	103405660	cassetteExon	ENSMUST00000076702.12	known	1.00	276.5	0	175;378	0	n	1.00	240.0	0	168;312	0	n	0.97	342.0	10	227;457	10	y	0.98	328.0	5	224;432	5	y	1.00	294.5	0	194;395	0	n	0.98	163.0	3	118;208	3	y	0.99	299.5	3	191;408	3	y	0.98	121.0	3	85;157	3	y	0.99	233.5	2	161;306	2	y	1.00	327.5	0	210;445	0	n	0.99	195.0	2	130;260	2	y	1.00	227.5	0	142;313	0	n	ENSMUSG00000064215.14	Ifi27	chr12	protein_coding	interferon, alpha-inducible protein 27
known_NIR_3705	chr12	103403964	103405660	+	103401832	103405660	A5SS	ENSMUST00000076788.12	known	0.99	378	3	378	3	y	0.99	312	2	312	2	y	0.98	457	10	457	10	y	0.99	432	3	432	3	y	0.99	395	4	395	4	y	0.98	208	5	208	5	y	0.99	408	3	408	3	y	1.00	157	0	157	0	n	0.99	306	4	306	4	y	1.00	445	2	445	2	y	1.00	260	1	260	1	n	1.00	313	0	313	0	n	ENSMUSG00000064215.14	Ifi27	chr12	protein_coding	interferon, alpha-inducible protein 27
known_NIR_3706	chr12	103592980	103594488	-	103593142	103594488	A3SS	ENSMUST00000044231.12	known	0.00	0	2502	0	2502	n	0.12	419	3143	419	3143	y	0.11	423	3423	423	3423	y	0.10	286	2469	286	2469	y	0.00	0	3522	0	3522	n	0.00	0	1691	0	1691	n	0.11	369	2877	369	2877	y	0.00	0	1898	0	1898	n	0.00	0	1436	0	1436	n	0.11	326	2529	326	2529	y	0.00	0	1550	0	1550	n	0.00	0	2250	0	2250	n	ENSMUSG00000061947.11	Serpina10	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10
known_NIR_3707	chr12	103698851	103701430	-	103698851	103706345	A5SS	ENSMUST00000186166.7	known	0.98	55	1	55	1	n	1.00	45	0	45	0	n	1.00	40	0	40	0	n	0.99	85	1	85	1	n	0.96	76	3	76	3	y	1.00	29	0	29	0	n	1.00	41	0	41	0	n	1.00	31	0	31	0	n	1.00	70	0	70	0	n	0.95	59	3	59	3	y	1.00	71	0	71	0	n	1.00	102	0	102	0	n	ENSMUSG00000071178.12	Serpina1b	chr12	protein_coding	serine (or cysteine) preptidase inhibitor, clade A, member 1B
known_NIR_3708	chr12	103698851	103706345	-	103698851	103704356	5pMXE	ENSMUST00000095450.11	known	0.00	1	4038	1	4038	n	0.00	0	3447	0	3447	n	0.00	0	3343	0	3343	n	0.00	1	5662	1	5662	n	0.00	3	6421	3	6421	y	0.00	0	2380	0	2380	n	0.00	0	4564	0	4564	n	0.00	0	3136	0	3136	n	0.00	0	4557	0	4557	n	0.00	3	6081	3	6081	y	0.00	0	5033	0	5033	n	0.00	0	7170	0	7170	n	ENSMUSG00000071178.12	Serpina1b	chr12	protein_coding	serine (or cysteine) preptidase inhibitor, clade A, member 1B
known_NIR_3709	chr12	103698851;103701590	103701430;103704356	-	103698851	103704356	cassetteExon	ENSMUST00000095450.11	known	0.01	36.0	4038	55;17	4038	y	0.01	27.5	3447	45;10	3447	y	0.01	27.5	3343	40;15	3343	y	0.01	48.5	5662	85;12	5662	y	0.01	48.5	6421	76;21	6421	y	0.01	20.5	2380	29;12	2380	y	0.01	27.0	4564	41;13	4564	y	0.01	19.0	3136	31;7	3136	y	0.01	49.0	4557	70;28	4557	y	0.01	38.5	6081	59;18	6081	y	0.01	43.0	5033	71;15	5033	y	0.01	65.0	7170	102;28	7170	y	ENSMUSG00000071178.12	Serpina1b	chr12	protein_coding	serine (or cysteine) preptidase inhibitor, clade A, member 1B
known_NIR_3710	chr12	103824315	103829781	-	103824315;103826887	103826673;103829781	ES	ENSMUST00000072876.12	known	0.99	771	11.0	771	18;4	y	1.00	817	4.0	817	6;2	y	0.99	838	12.0	838	19;5	y	1.00	1251	4.5	1251	7;2	y	0.99	1307	12.0	1307	19;5	y	0.99	525	6.5	525	7;6	y	0.99	868	12.5	868	22;3	y	0.99	673	7.5	673	10;5	y	0.99	981	13.0	981	22;4	y	0.99	1266	7.5	1266	11;4	y	0.99	927	6.0	927	12;0	n	0.99	1368	14.5	1368	22;7	y	ENSMUSG00000066366.15	Serpina1a	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 1A
known_NIR_3711	chr12	103824315;103825503	103825260;103829781	-	103824315	103829781	cassetteExon	ENSMUST00000085056.8	known	0.05	37.0	771	46;28	771	y	0.03	29.5	817	37;22	817	y	0.06	52.5	838	53;52	838	y	0.04	51.5	1251	58;45	1251	y	0.05	67.5	1307	80;55	1307	y	0.06	35.0	525	36;34	525	y	0.06	57.0	868	60;54	868	y	0.04	28.5	673	29;28	673	y	0.05	51.5	981	48;55	981	y	0.05	66.5	1266	75;58	1266	y	0.05	49.5	927	45;54	927	y	0.06	82.0	1368	100;64	1368	y	ENSMUSG00000066366.15	Serpina1a	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 1A
known_NIR_3712	chr12	103824315;103825503	103825260;103829781	-	103824315;103826887	103826673;103829781	MXE	ENSMUST00000072876.12	known	0.77	37.0	11.0	46;28	18;4	y	0.88	29.5	4.0	37;22	6;2	y	0.81	52.5	12.0	53;52	19;5	y	0.92	51.5	4.5	58;45	7;2	y	0.85	67.5	12.0	80;55	19;5	y	0.84	35.0	6.5	36;34	7;6	y	0.82	57.0	12.5	60;54	22;3	y	0.79	28.5	7.5	29;28	10;5	y	0.80	51.5	13.0	48;55	22;4	y	0.90	66.5	7.5	75;58	11;4	y	0.89	49.5	6.0	45;54	12;0	n	0.85	82.0	14.5	100;64	22;7	y	ENSMUSG00000066366.15	Serpina1a	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 1A
known_NIR_3713	chr12	103917671	103923116	-	103917671	103924993	A5SS	ENSMUST00000122229.8	known	1.00	11428	0	11428	0	n	1.00	8546	1	8546	1	n	1.00	11815	0	11815	0	n	1.00	17442	0	17442	0	n	1.00	27583	1	27583	1	n	1.00	11421	0	11421	0	n	1.00	14430	3	14430	3	y	1.00	13643	1	13643	1	n	1.00	14940	0	14940	0	n	1.00	14388	0	14388	0	n	1.00	10936	0	10936	0	n	1.00	24350	3	24350	3	y	ENSMUSG00000072849.11	Serpina1e	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 1E
known_NIR_3714	chr12	103952768	103954625	-	103952768	103956120	A5SS	ENSMUST00000074693.13	known	0.17	7	35	7	35	y	0.04	2	44	2	44	y	0.18	16	72	16	72	y	0.07	3	42	3	42	y	0.07	6	86	6	86	y	0.08	4	49	4	49	y	0.14	11	66	11	66	y	0.13	8	52	8	52	y	0.08	3	35	3	35	y	0.07	6	76	6	76	y	0.06	2	33	2	33	y	0.12	6	45	6	45	y	ENSMUSG00000063232.17	Serpina11	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11
known_NIR_3715	chr12	103952768	103956120	-	103952768	103956148	A5SS	ENSMUST00000120251.9	known	0.16	35	182	35	182	y	0.20	44	181	44	181	y	0.16	72	370	72	370	y	0.17	42	206	42	206	y	0.20	86	352	86	352	y	0.18	49	218	49	218	y	0.18	66	295	66	295	y	0.19	52	221	52	221	y	0.15	35	205	35	205	y	0.22	76	271	76	271	y	0.16	33	176	33	176	y	0.18	45	204	45	204	y	ENSMUSG00000063232.17	Serpina11	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11
known_NIR_3716	chr12	103952768	103962767	-	103952768	103956120	5pMXE	ENSMUST00000074693.13	known	0.03	1	35	1	35	n	0.00	0	44	0	44	n	0.00	0	72	0	72	n	0.02	1	42	1	42	n	0.00	0	86	0	86	n	0.00	0	49	0	49	n	0.00	0	66	0	66	n	0.02	1	52	1	52	n	0.05	2	35	2	35	y	0.00	0	76	0	76	n	0.00	0	33	0	33	n	0.00	0	45	0	45	n	ENSMUSG00000063232.17	Serpina11	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11
known_NIR_3717	chr12	103952768	103962767	-	103952768	103956148	5pMXE	ENSMUST00000120251.9	known	0.01	1	182	1	182	n	0.00	0	181	0	181	n	0.00	0	370	0	370	n	0.00	1	206	1	206	n	0.00	0	352	0	352	n	0.00	0	218	0	218	n	0.00	0	295	0	295	n	0.00	1	221	1	221	n	0.01	2	205	2	205	y	0.00	0	271	0	271	n	0.00	0	176	0	176	n	0.00	0	204	0	204	n	ENSMUSG00000063232.17	Serpina11	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11
known_NIR_3718	chr12	103952768;103954748	103954625;103956148	-	103952768	103956148	cassetteExon	ENSMUST00000120251.9	known	0.02	3.5	182	7;0	182	n	0.01	1.5	181	2;1	181	n	0.03	12.5	370	16;9	370	y	0.01	1.5	206	3;0	206	n	0.02	5.5	352	6;5	352	y	0.04	8.0	218	4;12	218	y	0.02	7.5	295	11;4	295	y	0.03	7.5	221	8;7	221	y	0.02	3.5	205	3;4	205	y	0.02	5.5	271	6;5	271	y	0.01	1.0	176	2;0	176	n	0.02	4.0	204	6;2	204	y	ENSMUSG00000063232.17	Serpina11	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11
known_NIR_3719	chr12	104180879	104183128	+	104180879;104181605	104181394;104183128	ES	ENSMUST00000121337.8	known	0.00	0	1.5	0	1;2	n	0.00	0	1.5	0	0;3	n	0.02	2	89.5	2	70;109	y	0.00	0	0.5	0	1;0	n	0.00	0	8.5	0	8;9	n	0.00	0	21.0	0	12;30	n	0.00	0	4.5	0	3;6	n	0.00	0	7.0	0	10;4	n	0.00	0	2.0	0	0;4	n	0.00	0	2.0	0	2;2	n	0.00	0	2.5	0	1;4	n	0.00	0	4.0	0	5;3	n	ENSMUSG00000066363.13	Serpina3f	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 3F
known_NIR_3720	chr12	104229473	104231353	+	104229473;104230694	104230561;104231353	ES	ENSMUST00000109958.3	known	0.00	0	2.0	0	2;2	n	0.00	0	1.5	0	1;2	n	0.00	1	244.5	1	193;296	n	0.00	0	0.5	0	0;1	n	0.00	0	6.0	0	8;4	n	0.01	2	197.5	2	156;239	y	0.00	0	28.5	0	27;30	n	0.00	0	75.5	0	75;76	n	0.00	0	0.5	0	0;1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000079014.5	Serpina3i	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 3I
known_NIR_3721	chr12	104304804	104306753	+	104304804	104355323	A3SS	ENSMUST00000101078.12	known	1.00	22746	12	22746	12	y	1.00	14686	4	14686	4	y	1.00	50889	18	50889	18	y	1.00	31038	15	31038	15	y	1.00	56107	14	56107	14	y	1.00	33062	9	33062	9	y	1.00	40271	12	40271	12	y	1.00	37095	18	37095	18	y	1.00	20937	5	20937	5	y	1.00	25091	7	25091	7	y	1.00	17280	3	17280	3	y	1.00	27919	3	27919	3	y	ENSMUSG00000079012.12	Serpina3m	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 3M
known_NIR_3722	chr12	104353482	104355323	+	104304804	104355323	A5SS	ENSMUST00000101078.12	known	0.99	1270	12	1270	12	y	1.00	921	4	921	4	y	1.00	4270	18	4270	18	y	0.99	1405	15	1405	15	y	1.00	3076	14	3076	14	y	1.00	2406	9	2406	9	y	0.99	2217	12	2217	12	y	0.99	2561	18	2561	18	y	0.99	716	5	716	5	y	0.99	1143	7	1143	7	y	1.00	713	3	713	3	y	1.00	999	3	999	3	y	ENSMUSG00000079012.12	Serpina3m	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 3M
known_NIR_3723	chr12	104738222;104739533	104739441;104740032	-	104738222	104740032	cassetteExon	ENSMUST00000109936.3	known	0.22	15.0	54	13;17	54	y	0.16	16.0	84	17;15	84	y	0.19	16.0	70	12;20	70	y	0.16	16.0	86	13;19	86	y	0.16	21.0	109	18;24	109	y	0.22	13.5	49	13;14	49	y	0.27	28.5	78	23;34	78	y	0.22	14.0	50	15;13	50	y	0.18	18.0	84	12;24	84	y	0.17	21.5	108	19;24	108	y	0.24	26.0	81	23;29	81	y	0.10	16.5	141	9;24	141	y	ENSMUSG00000021097.16	Clmn	chr12	protein_coding	calmin
known_NIR_3724	chr12	104740157	104740748	-	104740102	104740748	A3SS	ENSMUST00000109936.3	known	0.00	0	82	0	82	n	0.01	1	81	1	81	n	0.00	0	92	0	92	n	0.00	0	106	0	106	n	0.00	0	115	0	115	n	0.00	0	63	0	63	n	0.01	1	101	1	101	n	0.00	0	68	0	68	n	0.01	1	92	1	92	n	0.02	3	142	3	142	y	0.00	0	98	0	98	n	0.03	4	135	4	135	y	ENSMUSG00000021097.16	Clmn	chr12	protein_coding	calmin
known_NIR_3725	chr12	104740808;104742187	104742107;104743204	-	104740808	104743204	cassetteExon	ENSMUST00000109936.3	known	0.03	2.5	96	0;5	96	n	0.02	2.0	86	2;2	86	y	0.01	1.5	121	2;1	121	n	0.04	5.5	119	3;8	119	y	0.02	2.0	115	0;4	115	n	0.02	1.0	65	0;2	65	n	0.02	2.5	124	2;3	124	y	0.05	2.5	51	1;4	51	n	0.04	4.0	95	2;6	95	y	0.03	5.0	144	5;5	144	y	0.03	3.0	115	3;3	115	y	0.04	6.0	158	4;8	158	y	ENSMUSG00000021097.16	Clmn	chr12	protein_coding	calmin
known_NIR_3726	chr12	105602811	105604170	-	105602814	105604170	A3SS	ENSMUST00000221015.2	known	0.06	2	29	2	29	y	0.35	6	11	6	11	y	0.15	7	39	7	39	y	0.10	4	36	4	36	y	0.16	12	61	12	61	y	0.12	3	23	3	23	y	0.13	7	45	7	45	y	0.12	3	23	3	23	y	0.12	4	28	4	28	y	0.19	10	43	10	43	y	0.00	0	27	0	27	n	0.09	3	29	3	29	y	ENSMUSG00000041341.11	Atg2b	chr12	protein_coding	autophagy related 2B
known_NIR_3727	chr12	105751072	105765910	+	105751173	105765910	A5SS	ENSMUST00000109901.9	known	0.00	0	183	0	183	n	0.01	2	170	2	170	y	0.00	0	315	0	315	n	0.01	2	179	2	179	y	0.00	0	324	0	324	n	0.01	1	165	1	165	n	0.00	1	249	1	249	n	0.03	5	152	5	152	y	0.01	1	155	1	155	n	0.00	1	211	1	211	n	0.00	0	160	0	160	n	0.00	0	187	0	187	n	ENSMUSG00000021111.16	Papola	chr12	protein_coding	poly (A) polymerase alpha
known_NIR_3728	chr12	105751173	105771186	+	105767009	105771186	A5SS&ES	ENSMUST00000172040.8	known	0.01	2	142	2	142	y	0.01	2	150	2	150	y	0.01	3	252	3	252	y	0.01	2	134	2	134	y	0.00	1	235	1	235	n	0.00	0	110	0	110	n	0.01	2	253	2	253	y	0.00	0	117	0	117	n	0.01	1	107	1	107	n	0.02	3	195	3	195	y	0.00	0	127	0	127	n	0.00	0	193	0	193	n	ENSMUSG00000021111.16	Papola	chr12	protein_coding	poly (A) polymerase alpha
known_NIR_3729	chr12	105766083	105771186	+	105766083;105767009	105766943;105771186	ES	ENSMUST00000109901.9	known	0.00	0	147.0	0	152;142	n	0.01	1	148.5	1	147;150	n	0.00	0	251.0	0	250;252	n	0.01	1	153.0	1	172;134	n	0.00	0	237.5	0	240;235	n	0.00	0	110.0	0	110;110	n	0.00	1	244.5	1	236;253	n	0.00	0	112.0	0	107;117	n	0.00	0	115.0	0	123;107	n	0.00	0	209.0	0	223;195	n	0.01	2	133.5	2	140;127	y	0.00	0	192.5	0	192;193	n	ENSMUSG00000021111.16	Papola	chr12	protein_coding	poly (A) polymerase alpha
known_NIR_3730	chr12	105773477	105775602	+	105773477;105774925	105774814;105775602	ES	ENSMUST00000109901.9	known	0.00	1	213.5	1	231;196	n	0.02	4	220.5	4	242;199	y	0.02	5	301.0	5	330;272	y	0.00	0	197.0	0	220;174	n	0.01	2	362.0	2	446;278	y	0.00	0	162.5	0	172;153	n	0.01	4	287.0	4	278;296	y	0.01	1	124.0	1	123;125	n	0.01	1	155.0	1	178;132	n	0.01	2	236.0	2	245;227	y	0.01	2	189.5	2	208;171	y	0.00	1	256.5	1	285;228	n	ENSMUSG00000021111.16	Papola	chr12	protein_coding	poly (A) polymerase alpha
known_NIR_3731	chr12	105773477	105775602	+	105774925	105775602	A5SS&ES	ENSMUST00000166329.8	known	0.01	1	196	1	196	n	0.02	4	199	4	199	y	0.02	5	272	5	272	y	0.00	0	174	0	174	n	0.01	2	278	2	278	y	0.00	0	153	0	153	n	0.01	4	296	4	296	y	0.01	1	125	1	125	n	0.01	1	132	1	132	n	0.01	2	227	2	227	y	0.01	2	171	2	171	y	0.00	1	228	1	228	n	ENSMUSG00000021111.16	Papola	chr12	protein_coding	poly (A) polymerase alpha
known_NIR_3732	chr12	105775921	105778533	+	105775921	105777296	3pMXE	ENSMUST00000163805.2	known	0.14	10	64	10	64	y	0.03	2	58	2	58	y	0.04	7	167	7	167	y	0.07	7	97	7	97	y	0.09	12	122	12	122	y	0.00	0	58	0	58	n	0.06	8	116	8	116	y	0.03	2	77	2	77	y	0.05	4	69	4	69	y	0.10	13	118	13	118	y	0.00	0	69	0	69	n	0.04	4	89	4	89	y	ENSMUSG00000021111.16	Papola	chr12	protein_coding	poly (A) polymerase alpha
known_NIR_3733	chr12	105775921	105778533	+	105775921;105777368	105777296;105778533	ES	ENSMUST00000109901.9	known	0.12	10	70.5	10	64;77	y	0.04	2	52.0	2	58;46	y	0.04	7	153.0	7	167;139	y	0.06	7	102.0	7	97;107	y	0.08	12	130.0	12	122;138	y	0.00	0	61.0	0	58;64	n	0.07	8	108.5	8	116;101	y	0.03	2	74.5	2	77;72	y	0.05	4	70.5	4	69;72	y	0.10	13	113.0	13	118;108	y	0.00	0	75.0	0	69;81	n	0.04	4	90.0	4	89;91	y	ENSMUSG00000021111.16	Papola	chr12	protein_coding	poly (A) polymerase alpha
known_NIR_3734	chr12	105793345	105794543	+	105793345	105794540	A3SS	ENSMUST00000109901.9	known	0.12	11	79	11	79	y	0.07	6	77	6	77	y	0.07	12	170	12	170	y	0.07	8	99	8	99	y	0.08	12	144	12	144	y	0.09	7	69	7	69	y	0.07	9	113	9	113	y	0.17	14	67	14	67	y	0.10	10	88	10	88	y	0.11	17	132	17	132	y	0.08	6	70	6	70	y	0.03	4	120	4	120	y	ENSMUSG00000021111.16	Papola	chr12	protein_coding	poly (A) polymerase alpha
known_NIR_3735	chr12	105795536	105800969	+	105795536;105799421	105799359;105800969	ES	ENSMUST00000109901.9	known	0.06	8	133.5	8	137;130	y	0.04	4	108.0	4	104;112	y	0.02	6	249.5	6	265;234	y	0.01	2	137.0	2	147;127	y	0.00	0	204.0	0	208;200	n	0.04	4	93.5	4	105;82	y	0.03	4	148.5	4	153;144	y	0.03	3	98.5	3	89;108	y	0.00	0	123.0	0	144;102	n	0.00	0	190.5	0	199;182	n	0.00	0	114.0	0	119;109	n	0.04	7	152.5	7	143;162	y	ENSMUSG00000021111.16	Papola	chr12	protein_coding	poly (A) polymerase alpha
known_NIR_3736	chr12	105801043	105801422	+	105801043	105803024	A3SS	ENSMUST00000109901.9	known	0.18	19	89	19	89	y	0.19	20	86	20	86	y	0.04	9	214	9	214	y	0.14	17	108	17	108	y	0.21	33	127	33	127	y	0.15	13	73	13	73	y	0.08	11	134	11	134	y	0.04	3	78	3	78	y	0.15	12	70	12	70	y	0.06	12	173	12	173	y	0.14	14	83	14	83	y	0.13	19	123	19	123	y	ENSMUSG00000021111.16	Papola	chr12	protein_coding	poly (A) polymerase alpha
known_NIR_3737	chr12	106036874	106037829	+	106036874	106041266	A3SS	ENSMUST00000072040.7	known	0.21	3	11	3	11	y	0.12	2	15	2	15	y	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.08	1	11	1	11	n	0.00	0	5	0	5	n	0.05	1	21	1	21	n	0.12	1	7	1	7	n	0.08	1	11	1	11	n	0.05	1	20	1	20	n	0.20	4	16	4	16	y	0.21	4	15	4	15	y	ENSMUSG00000021115.16	Vrk1	chr12	protein_coding	vaccinia related kinase 1
known_NIR_3738	chr12	106036874	106041266	+	106039937	106041266	A5SS&ES	ENSMUST00000221312.2	known	0.61	11	7	11	7	y	1.00	15	0	15	0	n	0.83	10	2	10	2	y	0.68	15	7	15	7	y	0.58	11	8	11	8	y	1.00	5	0	5	0	n	0.88	21	3	21	3	y	0.88	7	1	7	1	n	0.92	11	1	11	1	n	0.71	20	8	20	8	y	0.89	16	2	16	2	y	0.71	15	6	15	6	y	ENSMUSG00000021115.16	Vrk1	chr12	protein_coding	vaccinia related kinase 1
known_NIR_3739	chr12	106036874;106037900	106037829;106039878	+	106036874	106039878	cassetteExon	ENSMUST00000085026.12	known	0.33	1.5	3	3;0	3	n	0.33	1.5	3	2;1	3	n	0.33	1.0	2	0;2	2	n	0.60	1.5	1	0;3	1	n	0.14	0.5	3	1;0	3	n	-	-	-	-	-	-	1.00	0.5	0	1;0	0	n	0.33	0.5	1	1;0	1	n	1.00	0.5	0	1;0	0	n	0.14	1.0	6	1;1	6	n	0.78	3.5	1	4;3	1	n	0.54	3.5	3	4;3	3	y	ENSMUSG00000021115.16	Vrk1	chr12	protein_coding	vaccinia related kinase 1
known_NIR_3740	chr12	106036874;106039937	106039878;106041266	+	106036874	106041266	cassetteExon	ENSMUST00000072040.7	known	0.31	5.0	11	3;7	11	y	0.09	1.5	15	3;0	15	n	0.17	2.0	10	2;2	10	y	0.21	4.0	15	1;7	15	n	0.33	5.5	11	3;8	11	y	0.00	0.0	5	0;0	5	n	0.07	1.5	21	0;3	21	n	0.12	1.0	7	1;1	7	n	0.04	0.5	11	0;1	11	n	0.26	7.0	20	6;8	20	y	0.09	1.5	16	1;2	16	n	0.23	4.5	15	3;6	15	y	ENSMUSG00000021115.16	Vrk1	chr12	protein_coding	vaccinia related kinase 1
known_NIR_3741	chr12	108079652	108081025	-	108079652	108084501	A5SS	ENSMUST00000071095.14	known	0.01	1	142	1	142	n	0.02	2	110	2	110	y	0.11	13	102	13	102	y	0.04	5	128	5	128	y	0.02	3	177	3	177	y	0.13	9	62	9	62	y	0.07	13	169	13	169	y	0.04	4	89	4	89	y	0.08	9	99	9	99	y	0.04	7	188	7	188	y	0.03	4	120	4	120	y	0.06	12	175	12	175	y	ENSMUSG00000056770.16	Setd3	chr12	protein_coding	SET domain containing 3
known_NIR_3742	chr12	108079652	108081025	-	108079652	108124013	A5SS	ENSMUST00000132682.8	known	0.25	1	3	1	3	n	0.50	2	2	2	2	n	0.72	13	5	13	5	y	0.31	5	11	5	11	y	0.33	3	6	3	6	n	0.47	9	10	9	10	y	0.57	13	10	13	10	y	0.50	4	4	4	4	n	0.64	9	5	9	5	y	0.58	7	5	7	5	y	0.50	4	4	4	4	n	0.75	12	4	12	4	y	ENSMUSG00000056770.16	Setd3	chr12	protein_coding	SET domain containing 3
known_NIR_3743	chr12	108079652	108084501	-	108079652	108124013	A5SS	ENSMUST00000132682.8	known	0.98	142	3	142	3	y	0.98	110	2	110	2	y	0.95	102	5	102	5	y	0.92	128	11	128	11	y	0.97	177	6	177	6	y	0.86	62	10	62	10	y	0.94	169	10	169	10	y	0.96	89	4	89	4	y	0.95	99	5	99	5	y	0.97	188	5	188	5	y	0.97	120	4	120	4	y	0.98	175	4	175	4	y	ENSMUSG00000056770.16	Setd3	chr12	protein_coding	SET domain containing 3
known_NIR_3744	chr12	108085423	108124013	-	108079652	108124013	A3SS	ENSMUST00000132682.8	known	0.98	122	3	122	3	y	0.98	93	2	93	2	y	0.96	130	5	130	5	y	0.94	169	11	169	11	y	0.97	215	6	215	6	y	0.88	76	10	76	10	y	0.95	204	10	204	10	y	0.97	119	4	119	4	y	0.96	123	5	123	5	y	0.98	204	5	204	5	y	0.97	148	4	148	4	y	0.98	185	4	185	4	y	ENSMUSG00000056770.16	Setd3	chr12	protein_coding	SET domain containing 3
known_NIR_3745	chr12	108124607	108129232	-	108124607;108126640	108126492;108129232	ES	ENSMUST00000071095.14	known	0.17	19	93.0	19	96;90	y	0.15	12	69.0	12	69;69	y	0.11	13	102.0	13	93;111	y	0.16	22	115.5	22	104;127	y	0.18	33	149.5	33	131;168	y	0.09	6	58.5	6	49;68	y	0.22	34	119.0	34	109;129	y	0.18	12	55.5	12	57;54	y	0.12	12	89.5	12	90;89	y	0.21	37	137.0	37	145;129	y	0.16	16	83.0	16	93;73	y	0.25	41	123.5	41	126;121	y	ENSMUSG00000056770.16	Setd3	chr12	protein_coding	SET domain containing 3
known_NIR_3746	chr12	108131431;108133654	108133532;108145412	-	108131431	108145412	cassetteExon	ENSMUST00000071095.14	known	0.02	2.0	81	2;2	81	y	0.02	1.0	40	2;0	40	n	0.01	0.5	80	1;0	80	n	0.03	3.0	107	4;2	107	y	0.04	5.5	125	6;5	125	y	0.02	1.0	49	1;1	49	n	0.06	6.0	103	5;7	103	y	0.03	2.0	73	3;1	73	n	0.00	0.0	49	0;0	49	n	0.05	5.5	111	9;2	111	y	0.06	4.5	74	6;3	74	y	0.04	4.5	102	9;0	102	n	ENSMUSG00000056770.16	Setd3	chr12	protein_coding	SET domain containing 3
known_NIR_3747	chr12	108649520	108652309	+	108649669	108652309	A5SS	ENSMUST00000222048.2	known	0.55	12	10	12	10	y	0.45	9	11	9	11	y	0.25	2	6	2	6	n	0.71	5	2	5	2	n	0.25	3	9	3	9	y	0.00	0	6	0	6	n	0.61	11	7	11	7	y	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.57	4	3	4	3	n	0.58	7	5	7	5	y	0.56	5	4	5	4	n	ENSMUSG00000021262.16	Evl	chr12	protein_coding	Ena-vasodilator stimulated phosphoprotein
known_NIR_3748	chr12	108649520;108649669	108649607;108652309	+	108649520	108652309	cassetteExon	ENSMUST00000077735.13	known	0.48	11.0	12	12;10	12	y	0.59	13.0	9	15;11	9	y	0.78	7.0	2	8;6	2	y	0.47	4.5	5	7;2	5	y	0.70	7.0	3	5;9	3	y	1.00	5.5	0	5;6	0	n	0.45	9.0	11	11;7	11	y	1.00	6.0	0	4;8	0	n	1.00	7.0	0	9;5	0	n	0.56	5.0	4	7;3	4	y	0.46	6.0	7	7;5	7	y	0.38	3.0	5	2;4	5	y	ENSMUSG00000021262.16	Evl	chr12	protein_coding	Ena-vasodilator stimulated phosphoprotein
known_NIR_3749	chr12	108817133	108819275	+	108803476	108819275	A5SS	ENSMUST00000221787.2	known	1.00	793	2	793	2	y	1.00	1090	3	1090	3	y	1.00	1518	6	1518	6	y	1.00	1633	2	1633	2	y	1.00	1248	0	1248	0	n	1.00	569	0	569	0	n	0.99	1374	7	1374	7	y	1.00	608	2	608	2	y	1.00	591	1	591	1	n	1.00	1467	2	1467	2	y	1.00	1036	0	1036	0	n	1.00	994	4	994	4	y	ENSMUSG00000048856.10	Slc25a47	chr12	protein_coding	solute carrier family 25, member 47
known_NIR_3750	chr12	108854474	108859995	-	108854474	108859086	5pMXE	ENSMUST00000161410.8	known	1.00	34	0	34	0	n	1.00	22	0	22	0	n	0.99	89	1	89	1	n	1.00	34	0	34	0	n	1.00	48	0	48	0	n	1.00	33	0	33	0	n	0.95	37	2	37	2	y	1.00	37	0	37	0	n	1.00	34	0	34	0	n	0.93	28	2	28	2	y	1.00	25	0	25	0	n	1.00	27	0	27	0	n	ENSMUSG00000021266.17	Wars	chr12	protein_coding	tryptophanyl-tRNA synthetase
known_NIR_3751	chr12	108862985	108863835	+	108860256	108863835	A5SS	ENSMUST00000220667.2	known	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.10	1	9	1	9	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.25	2	6	2	6	n	0.00	0	3	0	3	n	0.30	3	7	3	7	y	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	ENSMUSG00000040877.17	Wdr25	chr12	protein_coding	WD repeat domain 25
known_NIR_3752	chr12	108863932	108946617	+	108864651	108946617	A5SS	ENSMUST00000167816.8	known	0.10	1	9	1	9	n	0.29	2	5	2	5	n	0.09	2	20	2	20	y	0.18	2	9	2	9	y	0.20	1	4	1	4	n	0.14	1	6	1	6	n	0.00	0	10	0	10	n	0.14	1	6	1	6	n	0.20	2	8	2	8	y	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	ENSMUSG00000040877.17	Wdr25	chr12	protein_coding	WD repeat domain 25
known_NIR_3753	chr12	109509732	109509910	+	109509688	109509910	A5SS	ENSMUST00000129245.8	known	0.56	5	4	5	4	n	0.50	2	2	2	2	n	0.50	4	4	4	4	n	0.90	9	1	9	1	n	0.33	1	2	1	2	n	0.50	1	1	1	1	n	0.48	10	11	10	11	y	0.50	4	4	4	4	n	0.75	3	1	3	1	n	0.80	4	1	4	1	n	1.00	2	0	2	0	n	0.00	0	4	0	4	n	ENSMUSG00000021268.18	Meg3	chr12	lncRNA	maternally expressed 3
known_NIR_3754	chr12	109510625	109512313	+	109510625;109510924	109510831;109512313	ES	ENSMUST00000143836.8	known	0.57	2	1.5	2	3;0	n	0.00	0	0.5	0	0;1	n	0.20	1	4.0	1	5;3	n	0.00	0	4.5	0	3;6	n	0.00	0	0.5	0	0;1	n	0.00	0	3.0	0	3;3	n	0.19	2	8.5	2	5;12	y	0.67	1	0.5	1	1;0	n	0.00	0	2.0	0	0;4	n	0.44	2	2.5	2	2;3	n	0.00	0	0.5	0	0;1	n	0.00	0	3.0	0	3;3	n	ENSMUSG00000021268.18	Meg3	chr12	lncRNA	maternally expressed 3
known_NIR_3755	chr12	109623265	109624487	+	109623274	109624487	A5SS	ENSMUST00000238468.2	known	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.18	2	9	2	9	y	0.67	2	1	2	1	n	-	-	-	-	-	-	1.00	2	0	2	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000097451.12	Rian	chr12	lncRNA	RNA imprinted and accumulated in nucleus
known_NIR_3756	chr12	110414471	110432283	+	110414471	110415964	3pMXE	ENSMUST00000222276.2	known	0.78	36	10	36	10	y	0.80	45	11	45	11	y	0.66	76	39	76	39	y	0.85	34	6	34	6	y	0.77	88	26	88	26	y	0.75	56	19	56	19	y	0.79	74	20	74	20	y	0.66	44	23	44	23	y	0.80	37	9	37	9	y	0.82	80	17	80	17	y	0.80	52	13	52	13	y	0.86	51	8	51	8	y	ENSMUSG00000017843.15	Ppp2r5c	chr12	protein_coding	protein phosphatase 2, regulatory subunit B', gamma
known_NIR_3757	chr12	110452386	110488925	+	110432454	110488925	A5SS	ENSMUST00000220509.2	known	0.32	32	69	32	69	y	0.28	31	81	31	81	y	0.39	66	105	66	105	y	0.37	38	66	38	66	y	0.34	64	122	64	122	y	0.15	15	82	15	82	y	0.23	35	114	35	114	y	0.26	24	67	24	67	y	0.41	29	42	29	42	y	0.37	62	107	62	107	y	0.43	42	55	42	55	y	0.48	48	52	48	52	y	ENSMUSG00000017843.15	Ppp2r5c	chr12	protein_coding	protein phosphatase 2, regulatory subunit B', gamma
known_NIR_3758	chr12	110537202;110541295	110541179;110546835	+	110537202	110546835	cassetteExon	ENSMUST00000109832.3	known	0.68	8.5	4	12;5	4	y	0.26	3.5	10	2;5	10	y	0.11	2.5	20	3;2	20	y	0.32	6.5	14	9;4	14	y	0.40	8.0	12	10;6	12	y	0.31	4.0	9	4;4	9	y	0.23	6.5	22	9;4	22	y	0.29	6.0	15	7;5	15	y	0.20	4.0	16	5;3	16	y	0.37	10.5	18	14;7	18	y	0.39	7.0	11	5;9	11	y	0.32	6.5	14	7;6	14	y	ENSMUSG00000017843.15	Ppp2r5c	chr12	protein_coding	protein phosphatase 2, regulatory subunit B', gamma
known_NIR_3759	chr12	110541295;110544602	110544535;110546835	+	110541295	110546835	cassetteExon	ENSMUST00000084985.11	known	0.00	0.0	5	0;0	5	n	0.00	0.0	5	0;0	5	n	0.00	0.0	2	0;0	2	n	0.43	3.0	4	2;4	4	y	0.08	0.5	6	0;1	6	n	0.00	0.0	4	0;0	4	n	0.27	1.5	4	0;3	4	n	0.00	0.0	5	0;0	5	n	0.45	2.5	3	3;2	3	n	0.00	0.0	7	0;0	7	n	0.05	0.5	9	1;0	9	n	0.14	1.0	6	1;1	6	n	ENSMUSG00000017843.15	Ppp2r5c	chr12	protein_coding	protein phosphatase 2, regulatory subunit B', gamma
known_NIR_3760	chr12	110544602	110546835	+	110537202	110546835	A5SS	ENSMUST00000109832.3	known	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	20	0	20	n	0.22	4	14	4	14	y	0.08	1	12	1	12	n	0.00	0	9	0	9	n	0.12	3	22	3	22	y	0.00	0	15	0	15	n	0.11	2	16	2	16	y	0.00	0	18	0	18	n	0.00	0	11	0	11	n	0.07	1	14	1	14	n	ENSMUSG00000017843.15	Ppp2r5c	chr12	protein_coding	protein phosphatase 2, regulatory subunit B', gamma
known_NIR_3761	chr12	110662114	110662686	-	110662214	110662686	A3SS	ENSMUST00000021698.13	known	1.00	212	0	212	0	n	1.00	107	0	107	0	n	1.00	232	0	232	0	n	1.00	299	0	299	0	n	0.99	276	2	276	2	y	1.00	84	0	84	0	n	1.00	226	0	226	0	n	1.00	85	0	85	0	n	1.00	170	0	170	0	n	1.00	255	0	255	0	n	1.00	140	0	140	0	n	1.00	157	0	157	0	n	ENSMUSG00000021270.14	Hsp90aa1	chr12	protein_coding	heat shock protein 90, alpha (cytosolic), class A member 1
known_NIR_3762	chr12	110704711	110708564	+	110704711	110745730	A3SS	ENSMUST00000193053.6	known	0.00	0	32	0	32	n	0.03	1	33	1	33	n	0.02	1	40	1	40	n	0.00	0	42	0	42	n	0.02	1	40	1	40	n	0.08	2	23	2	23	y	0.06	2	34	2	34	y	0.03	1	37	1	37	n	0.00	0	27	0	27	n	0.00	0	44	0	44	n	0.00	0	25	0	25	n	0.05	2	38	2	38	y	ENSMUSG00000037957.15	Wdr20	chr12	protein_coding	WD repeat domain 20
known_NIR_3763	chr12	110745912	110759548	+	110745912	110769839	A3SS	ENSMUST00000193053.6	known	0.38	10	16	10	16	y	0.34	11	21	11	21	y	0.44	28	35	28	35	y	0.45	17	21	17	21	y	0.37	25	43	25	43	y	0.17	4	20	4	20	y	0.26	11	32	11	32	y	0.35	15	28	15	28	y	0.32	8	17	8	17	y	0.50	22	22	22	22	y	0.51	19	18	19	18	y	0.46	26	30	26	30	y	ENSMUSG00000037957.15	Wdr20	chr12	protein_coding	WD repeat domain 20
known_NIR_3764	chr12	110763441	110769839	+	110745912	110769839	A5SS	ENSMUST00000193053.6	known	0.24	5	16	5	16	y	0.30	9	21	9	21	y	0.08	3	35	3	35	y	0.19	5	21	5	21	y	0.16	8	43	8	43	y	0.13	3	20	3	20	y	0.29	13	32	13	32	y	0.12	4	28	4	28	y	0.29	7	17	7	17	y	0.19	5	22	5	22	y	0.31	8	18	8	18	y	0.23	9	30	9	30	y	ENSMUSG00000037957.15	Wdr20	chr12	protein_coding	WD repeat domain 20
known_NIR_3765	chr12	110822306	110830398	+	110822306;110827457	110827230;110830398	ES	ENSMUST00000170060.4	known	0.50	4	4.0	4	8;0	n	0.50	3	3.0	3	3;3	n	0.44	4	5.0	4	5;5	y	0.44	6	7.5	6	13;2	y	0.50	8	8.0	8	6;10	y	0.40	2	3.0	2	2;4	n	0.73	11	4.0	11	6;2	y	0.43	3	4.0	3	4;4	y	0.80	8	2.0	8	4;0	n	0.64	8	4.5	8	5;4	y	0.31	2	4.5	2	4;5	y	0.50	6	6.0	6	7;5	y	ENSMUSG00000021271.6	Zfp839	chr12	protein_coding	zinc finger protein 839
known_NIR_3766	chr12	110840563	110846119	-	110840563;110843404	110843275;110846119	ES	ENSMUST00000043716.9	known	0.00	0	25.5	0	18;33	n	0.18	5	22.5	5	15;30	y	0.00	0	34.5	0	24;45	n	0.00	0	33.0	0	30;36	n	0.05	2	42.0	2	45;39	y	0.07	2	25.0	2	18;32	y	0.04	2	45.0	2	34;56	y	0.00	0	20.0	0	27;13	n	0.14	3	19.0	3	17;21	y	0.03	1	38.5	1	41;36	n	0.09	3	30.5	3	28;33	y	0.04	1	24.5	1	15;34	n	ENSMUSG00000021276.11	Cinp	chr12	protein_coding	cyclin-dependent kinase 2 interacting protein
known_NIR_3767	chr12	110841710	110843275	-	110840563	110843275	A3SS	ENSMUST00000043716.9	known	0.42	13	18	13	18	y	0.46	13	15	13	15	y	0.31	11	24	11	24	y	0.21	8	30	8	30	y	0.24	14	45	14	45	y	0.22	5	18	5	18	y	0.33	17	34	17	34	y	0.21	7	27	7	27	y	0.19	4	17	4	17	y	0.18	9	41	9	41	y	0.39	18	28	18	28	y	0.44	12	15	12	15	y	ENSMUSG00000021276.11	Cinp	chr12	protein_coding	cyclin-dependent kinase 2 interacting protein
known_NIR_3768	chr12	110843404	110846119	-	110843404	110843657	5pMXE	ENSMUST00000221414.2	known	0.85	33	6	33	6	y	0.91	30	3	30	3	y	0.85	45	8	45	8	y	0.90	36	4	36	4	y	0.85	39	7	39	7	y	0.82	32	7	32	7	y	0.97	56	2	56	2	y	0.76	13	4	13	4	y	0.91	21	2	21	2	y	0.92	36	3	36	3	y	0.87	33	5	33	5	y	0.83	34	7	34	7	y	ENSMUSG00000021276.11	Cinp	chr12	protein_coding	cyclin-dependent kinase 2 interacting protein
known_NIR_3769	chr12	110843404;110843806	110843657;110846119	-	110843404	110846119	cassetteExon	ENSMUST00000043716.9	known	0.16	6.5	33	6;7	33	y	0.09	3.0	30	3;3	30	y	0.09	4.5	45	8;1	45	n	0.06	2.5	36	4;1	36	n	0.12	5.5	39	7;4	39	y	0.12	4.5	32	7;2	32	y	0.07	4.0	56	2;6	56	y	0.19	3.0	13	4;2	13	y	0.07	1.5	21	2;1	21	n	0.06	2.5	36	3;2	36	y	0.11	4.0	33	5;3	33	y	0.13	5.0	34	7;3	34	y	ENSMUSG00000021276.11	Cinp	chr12	protein_coding	cyclin-dependent kinase 2 interacting protein
known_NIR_3770	chr12	110843806	110846119	-	110845473	110846119	3pMXE	ENSMUST00000223407.2	known	1.00	7	0	7	0	n	0.20	3	12	3	12	y	0.12	1	7	1	7	n	0.12	1	7	1	7	n	0.31	4	9	4	9	y	0.18	2	9	2	9	y	0.50	6	6	6	6	y	0.67	2	1	2	1	n	0.17	1	5	1	5	n	0.15	2	11	2	11	y	0.27	3	8	3	8	y	0.43	3	4	3	4	n	ENSMUSG00000021276.11	Cinp	chr12	protein_coding	cyclin-dependent kinase 2 interacting protein
known_NIR_3771	chr12	110843806;110845473	110845422;110846119	-	110843806	110846119	cassetteExon	ENSMUST00000220607.2	known	0.07	0.5	7	1;0	7	n	0.67	6.0	3	0;12	3	n	0.80	4.0	1	1;7	1	n	0.78	3.5	1	0;7	1	n	0.56	5.0	4	1;9	4	n	0.75	6.0	2	3;9	2	y	0.33	3.0	6	0;6	6	n	0.33	1.0	2	1;1	2	n	0.71	2.5	1	0;5	1	n	0.76	6.5	2	2;11	2	y	0.57	4.0	3	0;8	3	n	0.40	2.0	3	0;4	3	n	ENSMUSG00000021276.11	Cinp	chr12	protein_coding	cyclin-dependent kinase 2 interacting protein
known_NIR_3772	chr12	110845473	110846119	-	110840563	110846119	A3SS	ENSMUST00000221102.2	known	-	-	-	-	-	-	0.71	12	5	12	5	y	1.00	7	0	7	0	n	1.00	7	0	7	0	n	0.82	9	2	9	2	y	0.82	9	2	9	2	y	0.75	6	2	6	2	n	1.00	1	0	1	0	n	0.62	5	3	5	3	n	0.92	11	1	11	1	n	0.73	8	3	8	3	y	0.80	4	1	4	1	n	ENSMUSG00000021276.11	Cinp	chr12	protein_coding	cyclin-dependent kinase 2 interacting protein
known_NIR_3773	chr12	110845473	110846119	-	110843404	110846119	A3SS	ENSMUST00000043716.9	known	0.00	0	33	0	33	n	0.29	12	30	12	30	y	0.13	7	45	7	45	y	0.16	7	36	7	36	y	0.19	9	39	9	39	y	0.22	9	32	9	32	y	0.10	6	56	6	56	y	0.07	1	13	1	13	n	0.19	5	21	5	21	y	0.23	11	36	11	36	y	0.20	8	33	8	33	y	0.11	4	34	4	34	y	ENSMUSG00000021276.11	Cinp	chr12	protein_coding	cyclin-dependent kinase 2 interacting protein
known_NIR_3774	chr12	110943982	110944382	-	110944204	110944382	A3SS	ENSMUST00000043459.13	known	0.25	1	3	1	3	n	0.57	8	6	8	6	y	0.88	7	1	7	1	n	0.70	7	3	7	3	y	0.70	14	6	14	6	y	1.00	1	0	1	0	n	0.55	6	5	6	5	y	0.62	5	3	5	3	n	0.67	2	1	2	1	n	0.60	6	4	6	4	y	0.43	3	4	3	4	n	0.83	5	1	5	1	n	ENSMUSG00000037904.15	Ankrd9	chr12	protein_coding	ankyrin repeat domain 9
known_NIR_3775	chr12	110943982;110944204	110944098;110944382	-	110943982	110944382	cassetteExon	ENSMUST00000128353.8	known	0.71	2.5	1	2;3	1	n	0.27	3.0	8	0;6	8	n	0.07	0.5	7	0;1	7	n	0.30	3.0	7	3;3	7	y	0.24	4.5	14	3;6	14	y	0.00	0.0	1	0;0	1	n	0.43	4.5	6	4;5	6	y	0.33	2.5	5	2;3	5	y	0.20	0.5	2	0;1	2	n	0.29	2.5	6	1;4	6	n	0.50	3.0	3	2;4	3	n	0.29	2.0	5	3;1	5	n	ENSMUSG00000037904.15	Ankrd9	chr12	protein_coding	ankyrin repeat domain 9
known_NIR_3776	chr12	111133036;111133541	111133433;111186245	+	111133036	111186245	cassetteExon	ENSMUST00000021706.11	known	0.20	0.5	2	0;1	2	n	1.00	1.0	0	2;0	0	n	0.42	5.0	7	6;4	7	y	0.75	3.0	1	4;2	1	n	1.00	5.0	0	5;5	0	n	0.80	4.0	1	3;5	1	n	1.00	2.0	0	3;1	0	n	0.11	1.0	8	0;2	8	n	0.00	0.0	3	0;0	3	n	1.00	1.5	0	2;1	0	n	1.00	0.5	0	0;1	0	n	0.33	1.0	2	1;1	2	n	ENSMUSG00000021277.17	Traf3	chr12	protein_coding	TNF receptor-associated factor 3
known_NIR_3777	chr12	111133036;111186355	111186245;111203996	+	111133036	111203996	cassetteExon	ENSMUST00000117269.8	known	1.00	4.5	0	2;7	0	n	1.00	4.0	0	0;8	0	n	1.00	16.5	0	7;26	0	n	0.67	2.0	1	1;3	1	n	1.00	8.0	0	0;16	0	n	1.00	5.5	0	1;10	0	n	0.71	5.0	2	0;10	2	n	0.83	9.5	2	8;11	2	y	1.00	4.0	0	3;5	0	n	1.00	2.0	0	0;4	0	n	1.00	1.0	0	0;2	0	n	1.00	4.0	0	2;6	0	n	ENSMUSG00000021277.17	Traf3	chr12	protein_coding	TNF receptor-associated factor 3
known_NIR_3778	chr12	111414803	111414922	+	111414803	111414973	A3SS	ENSMUST00000102745.10	known	0.00	0	34	0	34	n	0.00	0	13	0	13	n	0.00	0	48	0	48	n	0.00	0	23	0	23	n	0.03	2	66	2	66	y	0.00	0	21	0	21	n	0.00	0	42	0	42	n	0.00	0	33	0	33	n	0.00	0	29	0	29	n	0.00	0	49	0	49	n	0.00	0	32	0	32	n	0.00	0	40	0	40	n	ENSMUSG00000021281.16	Tnfaip2	chr12	protein_coding	tumor necrosis factor, alpha-induced protein 2
known_NIR_3779	chr12	111415073	111415174	+	111415073	111415665	A3SS	ENSMUST00000102745.10	known	0.08	2	23	2	23	y	0.27	3	8	3	8	y	0.02	1	40	1	40	n	0.06	2	29	2	29	y	0.12	6	46	6	46	y	0.14	3	18	3	18	y	0.06	2	29	2	29	y	0.04	1	26	1	26	n	0.06	2	29	2	29	y	0.00	0	37	0	37	n	0.15	5	29	5	29	y	0.05	2	37	2	37	y	ENSMUSG00000021281.16	Tnfaip2	chr12	protein_coding	tumor necrosis factor, alpha-induced protein 2
known_NIR_3780	chr12	111416323	111417092	+	111416323	111417117	A3SS	ENSMUST00000102745.10	known	0.08	2	23	2	23	y	0.00	0	21	0	21	n	0.03	2	56	2	56	y	0.03	1	32	1	32	n	0.03	2	75	2	75	y	0.00	0	17	0	17	n	0.00	0	38	0	38	n	0.00	0	30	0	30	n	0.05	3	53	3	53	y	0.00	0	37	0	37	n	0.07	3	38	3	38	y	0.12	5	38	5	38	y	ENSMUSG00000021281.16	Tnfaip2	chr12	protein_coding	tumor necrosis factor, alpha-induced protein 2
known_NIR_3781	chr12	111504982	111505981	+	111504982	111505842	A3SS	ENSMUST00000166123.9	known	0.03	5	184	5	184	y	0.03	5	150	5	150	y	0.03	14	438	14	438	y	0.01	3	341	3	341	y	0.02	6	338	6	338	y	0.00	0	180	0	180	n	0.00	0	228	0	228	n	0.02	3	187	3	187	y	0.01	2	169	2	169	y	0.02	6	309	6	309	y	0.02	4	186	4	186	y	0.02	5	264	5	264	y	ENSMUSG00000021282.18	Eif5	chr12	protein_coding	eukaryotic translation initiation factor 5
known_NIR_3782	chr12	111505586	111505842	+	111504982	111505842	A5SS	ENSMUST00000166123.9	known	0.00	0	184	0	184	n	0.01	2	150	2	150	y	0.02	9	438	9	438	y	0.00	0	341	0	341	n	0.00	1	338	1	338	n	0.01	1	180	1	180	n	0.01	3	228	3	228	y	0.02	3	187	3	187	y	0.01	1	169	1	169	n	0.02	6	309	6	309	y	0.01	1	186	1	186	n	0.00	0	264	0	264	n	ENSMUSG00000021282.18	Eif5	chr12	protein_coding	eukaryotic translation initiation factor 5
known_NIR_3783	chr12	111506121	111506564	+	111506121	111506235	3pMXE	ENSMUST00000221872.2	known	0.01	2	283	2	283	y	0.01	2	222	2	222	y	0.00	2	539	2	539	y	0.00	1	386	1	386	n	0.00	2	444	2	444	y	0.00	1	222	1	222	n	0.00	0	362	0	362	n	0.00	1	257	1	257	n	0.00	0	248	0	248	n	0.00	1	442	1	442	n	0.00	0	272	0	272	n	0.00	1	399	1	399	n	ENSMUSG00000021282.18	Eif5	chr12	protein_coding	eukaryotic translation initiation factor 5
known_NIR_3784	chr12	111506121	111506564	+	111506121;111506316	111506235;111506564	ES	ENSMUST00000166123.9	known	0.01	2	291.5	2	283;300	y	0.01	2	222.5	2	222;223	y	0.00	2	534.5	2	539;530	y	0.00	1	359.0	1	386;332	n	0.00	2	430.5	2	444;417	y	0.00	1	228.0	1	222;234	n	0.00	0	357.5	0	362;353	n	0.00	1	250.0	1	257;243	n	0.00	0	250.0	0	248;252	n	0.00	1	420.0	1	442;398	n	0.00	0	252.0	0	272;232	n	0.00	1	401.0	1	399;403	n	ENSMUSG00000021282.18	Eif5	chr12	protein_coding	eukaryotic translation initiation factor 5
known_NIR_3785	chr12	111506345	111506564	+	111506316	111506564	A5SS	ENSMUST00000166123.9	known	0.00	1	300	1	300	n	0.00	0	223	0	223	n	0.00	0	530	0	530	n	0.00	1	332	1	332	n	0.00	0	417	0	417	n	0.00	0	234	0	234	n	0.00	0	353	0	353	n	0.00	0	243	0	243	n	0.00	0	252	0	252	n	0.01	3	398	3	398	y	0.01	2	232	2	232	y	0.00	0	403	0	403	n	ENSMUSG00000021282.18	Eif5	chr12	protein_coding	eukaryotic translation initiation factor 5
known_NIR_3786	chr12	111508744	111509214	+	111508744	111509114	A3SS	ENSMUST00000166123.9	known	0.00	1	494	1	494	n	0.00	0	401	0	401	n	0.00	3	731	3	731	y	0.00	2	540	2	540	y	0.00	2	666	2	666	y	0.00	1	314	1	314	n	0.01	4	598	4	598	y	0.00	0	307	0	307	n	0.00	2	399	2	399	y	0.00	0	648	0	648	n	0.00	1	423	1	423	n	0.00	3	600	3	600	y	ENSMUSG00000021282.18	Eif5	chr12	protein_coding	eukaryotic translation initiation factor 5
known_NIR_3787	chr12	111508744	111509534	+	111508744;111509275	111509114;111509534	ES	ENSMUST00000166123.9	known	0.03	13	507.0	13	494;520	y	0.01	3	437.5	3	401;474	y	0.01	9	791.5	9	731;852	y	0.00	0	562.5	0	540;585	n	0.01	10	673.5	10	666;681	y	0.02	6	318.0	6	314;322	y	0.01	8	625.5	8	598;653	y	0.01	5	336.0	5	307;365	y	0.00	1	429.0	1	399;459	n	0.00	3	676.0	3	648;704	y	0.01	3	468.5	3	423;514	y	0.01	5	613.5	5	600;627	y	ENSMUSG00000021282.18	Eif5	chr12	protein_coding	eukaryotic translation initiation factor 5
known_NIR_3788	chr12	111508744;111509275	111509214;111509534	+	111508744	111509534	cassetteExon	ENSMUST00000222388.2	known	0.95	260.5	13	1;520	13	n	0.99	237.0	3	0;474	3	n	0.98	427.5	9	3;852	9	y	1.00	293.5	0	2;585	0	n	0.97	341.5	10	2;681	10	y	0.96	161.5	6	1;322	6	n	0.98	328.5	8	4;653	8	y	0.97	182.5	5	0;365	5	n	1.00	230.5	1	2;459	1	n	0.99	352.0	3	0;704	3	n	0.99	257.5	3	1;514	3	n	0.98	315.0	5	3;627	5	y	ENSMUSG00000021282.18	Eif5	chr12	protein_coding	eukaryotic translation initiation factor 5
known_NIR_3789	chr12	111570998	111581830	+	111570998	111589679	A3SS	ENSMUST00000221448.2	known	1.00	51	0	51	0	n	0.86	19	3	19	3	y	0.99	77	1	77	1	n	0.95	78	4	78	4	y	0.94	44	3	44	3	y	0.95	42	2	42	2	y	1.00	67	0	67	0	n	1.00	30	0	30	0	n	0.95	58	3	58	3	y	1.00	71	0	71	0	n	0.94	46	3	46	3	y	1.00	55	0	55	0	n	ENSMUSG00000007411.17	Mark3	chr12	protein_coding	MAP/microtubule affinity regulating kinase 3
known_NIR_3790	chr12	111584817	111589679	+	111570998	111589679	A5SS	ENSMUST00000221448.2	known	1.00	56	0	56	0	n	0.88	23	3	23	3	y	0.99	73	1	73	1	n	0.95	70	4	70	4	y	0.96	72	3	72	3	y	0.91	20	2	20	2	y	1.00	56	0	56	0	n	1.00	36	0	36	0	n	0.94	46	3	46	3	y	1.00	64	0	64	0	n	0.93	40	3	40	3	y	1.00	67	0	67	0	n	ENSMUSG00000007411.17	Mark3	chr12	protein_coding	MAP/microtubule affinity regulating kinase 3
known_NIR_3791	chr12	111614162	111618392	+	111614162	111621704	A3SS	ENSMUST00000075281.8	known	0.29	18	45	18	45	y	0.46	38	45	38	45	y	0.18	11	51	11	51	y	0.39	30	46	30	46	y	0.33	31	62	31	62	y	0.38	18	30	18	30	y	0.39	24	38	24	38	y	0.28	11	28	11	28	y	0.33	19	39	19	39	y	0.26	23	64	23	64	y	0.31	24	54	24	54	y	0.20	14	56	14	56	y	ENSMUSG00000007411.17	Mark3	chr12	protein_coding	MAP/microtubule affinity regulating kinase 3
known_NIR_3792	chr12	111614162;111618418	111618392;111619824	+	111614162	111619824	cassetteExon	ENSMUST00000084953.13	known	0.78	18.0	5	18;18	5	y	0.86	36.0	6	38;34	6	y	0.37	10.0	17	11;9	17	y	0.96	27.5	1	30;25	1	n	0.66	28.5	15	31;26	15	y	0.69	18.0	8	18;18	8	y	0.70	25.5	11	24;27	11	y	0.67	12.0	6	11;13	6	y	0.55	17.0	14	19;15	14	y	0.61	20.5	13	23;18	13	y	0.73	24.5	9	24;25	9	y	0.56	16.5	13	14;19	13	y	ENSMUSG00000007411.17	Mark3	chr12	protein_coding	MAP/microtubule affinity regulating kinase 3
known_NIR_3793	chr12	111614162;111619868	111619824;111621704	+	111614162	111621704	cassetteExon	ENSMUST00000075281.8	known	0.24	14.0	45	5;23	45	y	0.26	15.5	45	6;25	45	y	0.36	28.5	51	17;40	51	y	0.23	14.0	46	1;27	46	n	0.28	24.5	62	15;34	62	y	0.35	16.0	30	8;24	30	y	0.41	26.0	38	11;41	38	y	0.33	13.5	28	6;21	28	y	0.31	17.5	39	14;21	39	y	0.25	21.0	64	13;29	64	y	0.28	21.0	54	9;33	54	y	0.29	23.0	56	13;33	56	y	ENSMUSG00000007411.17	Mark3	chr12	protein_coding	MAP/microtubule affinity regulating kinase 3
known_NIR_3794	chr12	111677846	111679019	-	111677846	111679478	A5SS	ENSMUST00000054636.7	known	0.00	0	9	0	9	n	0.06	1	17	1	17	n	0.07	2	26	2	26	y	0.22	5	18	5	18	y	0.25	8	24	8	24	y	0.00	0	8	0	8	n	0.04	1	25	1	25	n	0.00	0	10	0	10	n	0.25	3	9	3	9	y	0.00	0	17	0	17	n	0.26	5	14	5	14	y	0.14	3	18	3	18	y	ENSMUSG00000049792.7	Bag5	chr12	protein_coding	BCL2-associated athanogene 5
known_NIR_3795	chr12	111679852;111688240	111688181;111689046	+	111679852	111689046	cassetteExon	ENSMUST00000040519.12	known	0.05	3.5	68	3;4	68	y	0.06	5.0	79	4;6	79	y	0.00	0.0	65	0;0	65	n	0.02	1.5	72	0;3	72	n	0.04	3.0	80	3;3	80	y	0.00	0.0	42	0;0	42	n	0.01	0.5	96	1;0	96	n	0.05	2.0	41	3;1	41	n	0.01	0.5	78	0;1	78	n	0.02	2.0	96	1;3	96	n	0.08	7.0	77	8;6	77	y	0.03	2.5	77	0;5	77	n	ENSMUSG00000037787.15	Coa8	chr12	protein_coding	cytochrome c oxidase assembly factor 8
known_NIR_3796	chr12	111696546	111717621	+	111696546	111700101	3pMXE	ENSMUST00000040519.12	known	0.01	1	79	1	79	n	0.03	3	87	3	87	y	0.02	1	59	1	59	n	0.03	2	78	2	78	y	0.04	4	90	4	90	y	0.00	0	53	0	53	n	0.02	2	111	2	111	y	0.05	2	40	2	40	y	0.00	0	84	0	84	n	0.02	2	120	2	120	y	0.00	0	107	0	107	n	0.00	0	94	0	94	n	ENSMUSG00000037787.15	Coa8	chr12	protein_coding	cytochrome c oxidase assembly factor 8
known_NIR_3797	chr12	111754030	111755783	+	111754030	111755759	A3SS	ENSMUST00000239017.2	known	0.17	7	33	7	33	y	0.32	16	34	16	34	y	0.29	14	34	14	34	y	0.28	11	29	11	29	y	0.36	26	46	26	46	y	0.35	6	11	6	11	y	0.33	25	50	25	50	y	0.30	6	14	6	14	y	0.26	6	17	6	17	y	0.26	15	43	15	43	y	0.38	15	25	15	25	y	0.30	14	32	14	32	y	ENSMUSG00000021288.20	Klc1	chr12	protein_coding	kinesin light chain 1
known_NIR_3798	chr12	111755893	111772442	+	111762112	111772442	A5SS&ES	ENSMUST00000084941.12	known	0.09	2	20	2	20	y	0.00	0	19	0	19	n	0.07	2	27	2	27	y	0.00	0	16	0	16	n	0.12	3	23	3	23	y	0.14	2	12	2	12	y	0.03	1	28	1	28	n	0.06	1	17	1	17	n	0.24	6	19	6	19	y	0.00	0	31	0	31	n	0.00	0	19	0	19	n	0.17	4	19	4	19	y	ENSMUSG00000021288.20	Klc1	chr12	protein_coding	kinesin light chain 1
known_NIR_3799	chr12	111755920	111760083	+	111755920	111761982	A3SS	ENSMUST00000239017.2	known	0.14	1	6	1	6	n	0.36	5	9	5	9	y	0.27	3	8	3	8	y	0.36	4	7	4	7	y	0.21	4	15	4	15	y	0.73	8	3	8	3	y	0.23	5	17	5	17	y	0.12	1	7	1	7	n	0.30	3	7	3	7	y	0.07	1	13	1	13	n	0.19	3	13	3	13	y	0.22	2	7	2	7	n	ENSMUSG00000021288.20	Klc1	chr12	protein_coding	kinesin light chain 1
known_NIR_3800	chr12	111755920	111760771	+	111755920	111761982	A3SS	ENSMUST00000239017.2	known	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.12	1	7	1	7	n	0.00	0	15	0	15	n	0.00	0	3	0	3	n	0.00	0	17	0	17	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.19	3	13	3	13	y	0.00	0	13	0	13	n	0.00	0	7	0	7	n	ENSMUSG00000021288.20	Klc1	chr12	protein_coding	kinesin light chain 1
known_NIR_3801	chr12	111762112	111766778	+	111762112	111772442	A3SS	ENSMUST00000084941.12	known	0.13	3	20	3	20	y	0.27	7	19	7	19	y	0.18	6	27	6	27	y	0.00	0	16	0	16	n	0.18	5	23	5	23	y	0.14	2	12	2	12	y	0.10	3	28	3	28	y	0.06	1	17	1	17	n	0.00	0	19	0	19	n	0.14	5	31	5	31	y	0.10	2	19	2	19	y	0.17	4	19	4	19	y	ENSMUSG00000021288.20	Klc1	chr12	protein_coding	kinesin light chain 1
known_NIR_3802	chr12	111772508	111774217	+	111772508	111772749	3pMXE	ENSMUST00000084941.12	known	0.06	2	31	2	31	y	0.00	0	25	0	25	n	0.00	0	31	0	31	n	0.00	0	14	0	14	n	0.00	0	30	0	30	n	0.00	0	25	0	25	n	0.00	0	31	0	31	n	0.00	0	15	0	15	n	0.00	0	24	0	24	n	0.00	0	36	0	36	n	0.00	0	35	0	35	n	0.00	0	36	0	36	n	ENSMUSG00000021288.20	Klc1	chr12	protein_coding	kinesin light chain 1
known_NIR_3803	chr12	111791542	111792010	+	111791542	111792013	A3SS	ENSMUST00000223211.2	known	0.10	1	9	1	9	n	0.50	4	4	4	4	n	0.00	0	1	0	1	n	0.12	1	7	1	7	n	0.29	4	10	4	10	y	0.43	3	4	3	4	n	0.23	3	10	3	10	y	0.00	0	2	0	2	n	0.14	1	6	1	6	n	0.23	3	10	3	10	y	0.14	1	6	1	6	n	0.24	4	13	4	13	y	ENSMUSG00000021286.9	Zfyve21	chr12	protein_coding	zinc finger, FYVE domain containing 21
known_NIR_3804	chr12	111791542	111793977	+	111791542	111798475	A3SS	ENSMUST00000222843.2	known	1.00	114	0	114	0	n	1.00	119	0	119	0	n	1.00	56	0	56	0	n	1.00	138	0	138	0	n	1.00	193	0	193	0	n	1.00	55	0	55	0	n	1.00	154	0	154	0	n	1.00	55	0	55	0	n	1.00	88	0	88	0	n	1.00	168	0	168	0	n	0.98	130	3	130	3	y	1.00	167	0	167	0	n	ENSMUSG00000021286.9	Zfyve21	chr12	protein_coding	zinc finger, FYVE domain containing 21
known_NIR_3805	chr12	111791542;111792066	111792010;111793977	+	111791542	111793977	cassetteExon	ENSMUST00000021714.9	known	0.04	4.5	114	1;8	114	n	0.04	5.5	119	4;7	119	y	0.03	1.5	56	0;3	56	n	0.02	3.0	138	1;5	138	n	0.03	5.5	193	4;7	193	y	0.06	3.5	55	3;4	55	y	0.03	5.0	154	3;7	154	y	0.03	1.5	55	0;3	55	n	0.04	4.0	88	1;7	88	n	0.03	5.0	168	3;7	168	y	0.04	5.0	130	1;9	130	n	0.05	8.0	167	4;12	167	y	ENSMUSG00000021286.9	Zfyve21	chr12	protein_coding	zinc finger, FYVE domain containing 21
known_NIR_3806	chr12	111791542;111792066	111792013;111793977	+	111791542	111793977	cassetteExon	ENSMUST00000021714.9	known	0.07	8.5	114	9;8	114	y	0.04	5.5	119	4;7	119	y	0.03	2.0	56	1;3	56	n	0.04	6.0	138	7;5	138	y	0.04	8.5	193	10;7	193	y	0.07	4.0	55	4;4	55	y	0.05	8.5	154	10;7	154	y	0.04	2.5	55	2;3	55	y	0.07	6.5	88	6;7	88	y	0.05	8.5	168	10;7	168	y	0.05	7.5	130	6;9	130	y	0.07	12.5	167	13;12	167	y	ENSMUSG00000021286.9	Zfyve21	chr12	protein_coding	zinc finger, FYVE domain containing 21
known_NIR_3807	chr12	111802210;111803540	111803436;111805035	-	111802210	111805035	cassetteExon	ENSMUST00000054815.15	known	0.27	1.5	4	1;2	4	n	0.87	6.5	1	5;8	1	n	0.30	3.5	8	2;5	8	y	0.53	10.0	9	13;7	9	y	0.73	22.0	8	24;20	8	y	0.38	2.5	4	2;3	4	n	0.52	12.0	11	17;7	11	y	0.67	6.0	3	4;8	3	y	0.62	8.0	5	12;4	5	y	0.55	8.5	7	7;10	7	y	1.00	7.0	0	6;8	0	n	0.43	14.5	19	17;12	19	y	ENSMUSG00000021285.16	Ppp1r13b	chr12	protein_coding	protein phosphatase 1, regulatory subunit 13B
known_NIR_3808	chr12	111909645	111910591	-	111909645	111910319	5pMXE	ENSMUST00000223453.2	known	0.08	2	23	2	23	y	0.41	9	13	9	13	y	0.28	10	26	10	26	y	0.15	3	17	3	17	y	0.04	1	22	1	22	n	0.21	6	22	6	22	y	0.17	5	25	5	25	y	0.33	8	16	8	16	y	0.13	3	20	3	20	y	0.18	4	18	4	18	y	0.22	6	21	6	21	y	0.05	1	21	1	21	n	ENSMUSG00000113769.2	5033406O09Rik	chr12	lncRNA	RIKEN cDNA 5033406O09 gene
known_NIR_3809	chr12	111909645	111910591	-	111909645;111910431	111910319;111910591	ES	ENSMUST00000221314.2	known	0.13	2	13.5	2	23;4	y	0.50	9	9.0	9	13;5	y	0.38	10	16.0	10	26;6	y	0.21	3	11.0	3	17;5	y	0.06	1	14.5	1	22;7	n	0.30	6	14.0	6	22;6	y	0.23	5	17.0	5	25;9	y	0.46	8	9.5	8	16;3	y	0.20	3	12.0	3	20;4	y	0.27	4	11.0	4	18;4	y	0.29	6	15.0	6	21;9	y	0.08	1	11.0	1	21;1	n	ENSMUSG00000113769.2	5033406O09Rik	chr12	lncRNA	RIKEN cDNA 5033406O09 gene
known_NIR_3810	chr12	111909645	111910591	-	111909645;111910500	111910319;111910591	ES	ENSMUST00000221669.2	known	0.13	2	13.5	2	23;4	y	0.50	9	9.0	9	13;5	y	0.36	10	18.0	10	26;10	y	0.19	3	13.0	3	17;9	y	0.06	1	17.0	1	22;12	n	0.27	6	16.0	6	22;10	y	0.22	5	17.5	5	25;10	y	0.36	8	14.0	8	16;12	y	0.15	3	17.5	3	20;15	y	0.22	4	14.0	4	18;10	y	0.27	6	16.5	6	21;12	y	0.06	1	16.0	1	21;11	n	ENSMUSG00000113769.2	5033406O09Rik	chr12	lncRNA	RIKEN cDNA 5033406O09 gene
known_NIR_3811	chr12	111910500	111910591	-	111910431	111910591	A3SS	ENSMUST00000221314.2	known	0.50	4	4	4	4	n	0.50	5	5	5	5	y	0.62	10	6	10	6	y	0.64	9	5	9	5	y	0.63	12	7	12	7	y	0.62	10	6	10	6	y	0.53	10	9	10	9	y	0.80	12	3	12	3	y	0.79	15	4	15	4	y	0.71	10	4	10	4	y	0.57	12	9	12	9	y	0.92	11	1	11	1	n	ENSMUSG00000113769.2	5033406O09Rik	chr12	lncRNA	RIKEN cDNA 5033406O09 gene
known_NIR_3812	chr12	111929787	111933028	-	111929787	111933358	A5SS	ENSMUST00000021719.7	known	0.07	46	610	46	610	y	0.09	65	627	65	627	y	0.02	17	761	17	761	y	0.07	47	676	47	676	y	0.08	72	815	72	815	y	0.05	23	443	23	443	y	0.07	69	920	69	920	y	0.06	26	430	26	430	y	0.05	37	677	37	677	y	0.07	64	865	64	865	y	0.06	54	796	54	796	y	0.07	63	903	63	903	y	ENSMUSG00000021290.7	Atp5mpl	chr12	protein_coding	ATP synthase membrane subunit 6.8PL
known_NIR_3813	chr12	111929787	111933128	-	111929787	111933028	A5SS	ENSMUST00000222874.2	known	0.04	2	46	2	46	y	0.04	3	65	3	65	y	0.00	0	17	0	17	n	0.06	3	47	3	47	y	0.00	0	72	0	72	n	0.00	0	23	0	23	n	0.05	4	69	4	69	y	0.00	0	26	0	26	n	0.00	0	37	0	37	n	0.04	3	64	3	64	y	0.04	2	54	2	54	y	0.02	1	63	1	63	n	ENSMUSG00000021290.7	Atp5mpl	chr12	protein_coding	ATP synthase membrane subunit 6.8PL
known_NIR_3814	chr12	111929787	111933128	-	111929787	111933358	A5SS	ENSMUST00000021719.7	known	0.00	2	610	2	610	y	0.00	3	627	3	627	y	0.00	0	761	0	761	n	0.00	3	676	3	676	y	0.00	0	815	0	815	n	0.00	0	443	0	443	n	0.00	4	920	4	920	y	0.00	0	430	0	430	n	0.00	0	677	0	677	n	0.00	3	865	3	865	y	0.00	2	796	2	796	y	0.00	1	903	1	903	n	ENSMUSG00000021290.7	Atp5mpl	chr12	protein_coding	ATP synthase membrane subunit 6.8PL
known_NIR_3815	chr12	112078734	112080466	+	112078734	112079415	3pMXE	ENSMUST00000221091.2	known	0.00	0	224	0	224	n	0.01	1	166	1	166	n	0.00	0	208	0	208	n	0.00	0	242	0	242	n	0.00	0	301	0	301	n	0.00	0	121	0	121	n	0.00	0	223	0	223	n	0.00	0	128	0	128	n	0.00	0	200	0	200	n	0.00	0	364	0	364	n	0.00	0	227	0	227	n	0.01	2	275	2	275	y	ENSMUSG00000037686.7	Aspg	chr12	protein_coding	asparaginase
known_NIR_3816	chr12	112078734;112080601	112080466;112080814	+	112078734;112079526	112079415;112080814	MXE	ENSMUST00000079400.6	known	0.04	9.5	204.5	0;19	224;185	n	0.06	11.5	167.5	1;22	166;169	n	0.02	3.5	191.0	0;7	208;174	n	0.06	14.5	227.5	0;29	242;213	n	0.06	16.5	271.0	0;33	301;241	n	0.02	2.5	104.5	0;5	121;88	n	0.06	13.5	213.0	0;27	223;203	n	0.04	5.0	123.0	0;10	128;118	n	0.04	7.5	173.0	0;15	200;146	n	0.03	9.0	321.5	0;18	364;279	n	0.04	8.5	196.5	0;17	227;166	n	0.04	10.5	261.0	2;19	275;247	y	ENSMUSG00000037686.7	Aspg	chr12	protein_coding	asparaginase
known_NIR_3817	chr12	112078734;112080939	112080466;112082001	+	112078734;112079526	112079415;112082001	MXE	ENSMUST00000223412.2	known	0.58	159.0	114.0	0;318	224;4	n	0.67	173.5	86.0	1;346	166;6	n	0.60	158.5	105.0	0;317	208;2	n	0.62	206.0	125.0	0;412	242;8	n	0.62	249.0	152.5	0;498	301;4	n	0.56	77.0	60.5	0;154	121;0	n	0.65	213.0	116.5	0;426	223;10	n	0.63	114.0	66.5	0;228	128;5	n	0.60	151.5	102.5	0;303	200;5	n	0.59	266.5	187.5	0;533	364;11	n	0.59	170.0	117.5	0;340	227;8	n	0.63	240.5	142.0	2;479	275;9	y	ENSMUSG00000037686.7	Aspg	chr12	protein_coding	asparaginase
known_NIR_3818	chr12	112079526	112082001	+	112079526;112080939	112080814;112082001	ES	ENSMUST00000079400.6	known	0.02	4	251.5	4	185;318	y	0.02	6	257.5	6	169;346	y	0.01	2	245.5	2	174;317	y	0.02	8	312.5	8	213;412	y	0.01	4	369.5	4	241;498	y	0.00	0	121.0	0	88;154	n	0.03	10	314.5	10	203;426	y	0.03	5	173.0	5	118;228	y	0.02	5	224.5	5	146;303	y	0.03	11	406.0	11	279;533	y	0.03	8	253.0	8	166;340	y	0.02	9	363.0	9	247;479	y	ENSMUSG00000037686.7	Aspg	chr12	protein_coding	asparaginase
known_NIR_3819	chr12	112082961	112087299	+	112082961;112086500	112086388;112087299	ES	ENSMUST00000079400.6	known	0.02	5	293.5	5	236;351	y	0.00	0	331.0	0	307;355	n	0.01	3	305.5	3	277;334	y	0.01	3	404.0	3	328;480	y	0.02	8	438.5	8	371;506	y	0.00	0	143.5	0	120;167	n	0.01	5	368.5	5	290;447	y	0.00	0	185.5	0	149;222	n	0.01	3	287.5	3	234;341	y	0.00	2	489.5	2	367;612	y	0.00	1	293.5	1	240;347	n	0.00	1	483.0	1	370;596	n	ENSMUSG00000037686.7	Aspg	chr12	protein_coding	asparaginase
known_NIR_3820	chr12	112082961	112087299	+	112086500	112087299	5pMXE	ENSMUST00000222645.2	known	0.01	5	351	5	351	y	0.00	0	355	0	355	n	0.01	3	334	3	334	y	0.01	3	480	3	480	y	0.02	8	506	8	506	y	0.00	0	167	0	167	n	0.01	5	447	5	447	y	0.00	0	222	0	222	n	0.01	3	341	3	341	y	0.00	2	612	2	612	y	0.00	1	347	1	347	n	0.00	1	596	1	596	n	ENSMUSG00000037686.7	Aspg	chr12	protein_coding	asparaginase
known_NIR_3821	chr12	112089473	112091244	+	112089473;112089887	112089724;112091244	ES	ENSMUST00000079400.6	known	0.02	10	480.0	10	476;484	y	0.01	6	527.5	6	496;559	y	0.01	6	440.0	6	467;413	y	0.01	6	475.5	6	433;518	y	0.01	6	667.0	6	668;666	y	0.00	1	225.5	1	211;240	n	0.01	6	612.5	6	576;649	y	0.00	0	278.5	0	274;283	n	0.01	3	482.5	3	461;504	y	0.01	4	671.0	4	673;669	y	0.00	2	521.5	2	513;530	y	0.01	4	602.0	4	570;634	y	ENSMUSG00000037686.7	Aspg	chr12	protein_coding	asparaginase
known_NIR_3822	chr12	112555969	112566428	+	112555329	112566428	A5SS	ENSMUST00000101029.4	known	0.02	1	60	1	60	n	0.00	0	26	0	26	n	0.00	0	22	0	22	n	0.03	2	64	2	64	y	0.00	0	83	0	83	n	0.00	0	13	0	13	n	0.00	0	51	0	51	n	0.00	0	27	0	27	n	0.00	0	45	0	45	n	0.00	0	58	0	58	n	0.00	0	24	0	24	n	0.04	2	50	2	50	y	ENSMUSG00000037679.10	Inf2	chr12	protein_coding	inverted formin, FH2 and WH2 domain containing
known_NIR_3823	chr12	112578470	112581329	+	112578470;112579038	112578982;112581329	ES	ENSMUST00000101029.4	known	0.02	3	122.0	3	124;120	y	0.05	8	137.5	8	129;146	y	0.00	0	69.0	0	76;62	n	0.02	3	120.5	3	120;121	y	0.02	4	174.0	4	174;174	y	0.09	4	39.0	4	40;38	y	0.02	3	153.5	3	151;156	y	0.02	1	54.5	1	56;53	n	0.04	4	95.0	4	94;96	y	0.04	6	144.0	6	134;154	y	0.02	2	89.0	2	83;95	y	0.02	4	156.5	4	165;148	y	ENSMUSG00000037679.10	Inf2	chr12	protein_coding	inverted formin, FH2 and WH2 domain containing
known_NIR_3824	chr12	112605973	112606046	+	112604716	112606046	A5SS	ENSMUST00000021726.8	known	0.00	0	45	0	45	n	0.00	0	39	0	39	n	0.00	0	3	0	3	n	0.00	0	58	0	58	n	0.00	0	47	0	47	n	0.00	0	8	0	8	n	0.00	0	149	0	149	n	0.00	0	10	0	10	n	0.00	0	49	0	49	n	0.00	0	110	0	110	n	0.04	2	50	2	50	y	0.00	0	81	0	81	n	ENSMUSG00000011148.15	Adssl1	chr12	protein_coding	adenylosuccinate synthetase like 1
known_NIR_3825	chr12	112611518	112614259	+	112611518;112613466	112613272;112614259	ES	ENSMUST00000021728.12	known	0.00	0	44.0	0	30;58	n	0.00	0	49.0	0	40;58	n	0.00	0	16.5	0	22;11	n	0.02	1	40.5	1	43;38	n	0.05	3	57.5	3	53;62	y	0.00	0	12.0	0	9;15	n	0.04	2	55.0	2	66;44	y	0.00	0	16.5	0	22;11	n	0.00	0	38.0	0	34;42	n	0.03	2	61.0	2	51;71	y	0.02	1	46.0	1	42;50	n	0.02	1	48.5	1	51;46	n	ENSMUSG00000064326.14	Siva1	chr12	protein_coding	SIVA1, apoptosis-inducing factor
known_NIR_3826	chr12	112638088	112640140	-	112638088	112640434	A5SS	ENSMUST00000001780.10	known	0.05	1	19	1	19	n	0.00	0	23	0	23	n	0.00	0	30	0	30	n	0.00	0	36	0	36	n	0.04	2	52	2	52	y	0.00	0	25	0	25	n	0.03	1	28	1	28	n	0.00	0	17	0	17	n	0.00	0	22	0	22	n	0.00	0	21	0	21	n	0.00	0	15	0	15	n	0.00	0	26	0	26	n	ENSMUSG00000001729.15	Akt1	chr12	protein_coding	thymoma viral proto-oncogene 1
known_NIR_3827	chr12	112645379	112645810	+	112645379	112645988	A3SS	ENSMUST00000174780.2	known	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.62	5	3	5	3	n	0.71	5	2	5	2	n	0.50	4	4	4	4	n	0.50	2	2	2	2	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	1.00	1	0	1	0	n	0.85	11	2	11	2	y	0.80	4	1	4	1	n	0.67	2	1	2	1	n	ENSMUSG00000037638.6	Zbtb42	chr12	protein_coding	zinc finger and BTB domain containing 42
known_NIR_3828	chr12	112688816	112691058	+	112688059	112691058	A5SS	ENSMUST00000220942.2	known	-	-	-	-	-	-	1.00	2	0	2	0	n	0.73	11	4	11	4	y	0.60	6	4	6	4	y	0.77	10	3	10	3	y	1.00	5	0	5	0	n	0.80	8	2	8	2	y	1.00	5	0	5	0	n	1.00	2	0	2	0	n	1.00	7	0	7	0	n	1.00	2	0	2	0	n	1.00	7	0	7	0	n	ENSMUSG00000072825.12	Cep170b	chr12	protein_coding	centrosomal protein 170B
known_NIR_3829	chr12	112705943	112707313	+	112705943	112707208	A3SS	ENSMUST00000101018.11	known	0.10	3	28	3	28	y	0.22	5	18	5	18	y	0.17	10	48	10	48	y	0.10	4	38	4	38	y	0.07	3	42	3	42	y	0.13	3	20	3	20	y	0.25	10	30	10	30	y	0.04	1	26	1	26	n	0.20	4	16	4	16	y	0.11	5	39	5	39	y	0.17	4	19	4	19	y	0.00	0	27	0	27	n	ENSMUSG00000072825.12	Cep170b	chr12	protein_coding	centrosomal protein 170B
known_NIR_3830	chr12	112898670	112902415	-	112898670	112901976	A5SS	ENSMUST00000222793.2	known	0.02	2	80	2	80	y	0.03	2	68	2	68	y	0.07	3	38	3	38	y	0.04	3	66	3	66	y	0.05	4	83	4	83	y	0.00	0	26	0	26	n	0.02	2	111	2	111	y	0.00	0	34	0	34	n	0.08	5	58	5	58	y	0.10	10	88	10	88	y	0.03	3	89	3	89	y	0.07	5	68	5	68	y	ENSMUSG00000002804.5	Nudt14	chr12	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 14
known_NIR_3831	chr12	112898670	112902415	-	112898670;112902177	112901976;112902415	ES	ENSMUST00000002881.5	known	0.04	2	46.0	2	80;12	y	0.05	2	40.5	2	68;13	y	0.14	3	19.0	3	38;0	n	0.07	3	39.0	3	66;12	y	0.08	4	45.0	4	83;7	y	0.00	0	15.0	0	26;4	n	0.03	2	65.5	2	111;20	y	0.00	0	19.0	0	34;4	n	0.14	5	31.5	5	58;5	y	0.16	10	52.0	10	88;16	y	0.06	3	50.0	3	89;11	y	0.11	5	40.0	5	68;12	y	ENSMUSG00000002804.5	Nudt14	chr12	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 14
known_NIR_3832	chr12	112898670	112902415	-	112898670;112902213	112901976;112902415	ES	ENSMUST00000221397.2	known	0.03	2	77.5	2	80;75	y	0.03	2	63.0	2	68;58	y	0.05	3	54.0	3	38;70	y	0.05	3	62.0	3	66;58	y	0.05	4	82.5	4	83;82	y	0.00	0	26.0	0	26;26	n	0.02	2	98.5	2	111;86	y	0.00	0	31.5	0	34;29	n	0.08	5	59.0	5	58;60	y	0.10	10	86.0	10	88;84	y	0.03	3	85.5	3	89;82	y	0.07	5	70.0	5	68;72	y	ENSMUSG00000002804.5	Nudt14	chr12	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 14
known_NIR_3833	chr12	112902177	112902415	-	112902213	112902415	A3SS	ENSMUST00000221397.2	known	0.14	12	75	12	75	y	0.18	13	58	13	58	y	0.00	0	70	0	70	n	0.17	12	58	12	58	y	0.08	7	82	7	82	y	0.13	4	26	4	26	y	0.19	20	86	20	86	y	0.12	4	29	4	29	y	0.08	5	60	5	60	y	0.16	16	84	16	84	y	0.12	11	82	11	82	y	0.14	12	72	12	72	y	ENSMUSG00000002804.5	Nudt14	chr12	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 14
known_NIR_3834	chr12	112937241;112937651	112937470;112943305	-	112937241	112943305	cassetteExon	ENSMUST00000011302.9	known	0.01	0.5	38	1;0	38	n	0.10	3.5	33	6;1	33	n	0.08	3.5	43	2;5	43	y	0.06	2.0	32	4;0	32	n	0.04	2.5	68	4;1	68	n	0.05	1.5	27	3;0	27	n	0.04	1.5	41	2;1	41	n	0.07	2.5	35	5;0	35	n	0.14	5.0	30	5;5	30	y	0.03	1.5	54	3;0	54	n	0.04	2.0	46	3;1	46	n	0.06	3.5	51	7;0	51	n	ENSMUSG00000011158.9	Brf1	chr12	protein_coding	BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit
known_NIR_3835	chr12	112940602	112940873	+	112940602	112940679	3pMXE	ENSMUST00000221500.2	known	0.12	3	23	3	23	y	0.00	0	12	0	12	n	0.06	1	16	1	16	n	0.00	0	19	0	19	n	0.00	0	31	0	31	n	0.00	0	17	0	17	n	0.04	1	23	1	23	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.05	2	37	2	37	y	0.04	1	26	1	26	n	0.08	2	22	2	22	y	ENSMUSG00000002803.15	Btbd6	chr12	protein_coding	BTB (POZ) domain containing 6
known_NIR_3836	chr12	112940602	112940873	+	112940602;112940769	112940679;112940873	ES	ENSMUST00000165079.8	known	0.10	3	27.0	3	23;31	y	0.00	0	20.5	0	12;29	n	0.05	1	19.0	1	16;22	n	0.00	0	23.0	0	19;27	n	0.00	0	40.0	0	31;49	n	0.00	0	16.5	0	17;16	n	0.04	1	27.0	1	23;31	n	0.00	0	16.5	0	14;19	n	0.00	0	17.0	0	10;24	n	0.05	2	41.5	2	37;46	y	0.04	1	24.5	1	26;23	n	0.08	2	22.0	2	22;22	y	ENSMUSG00000002803.15	Btbd6	chr12	protein_coding	BTB (POZ) domain containing 6
known_NIR_3837	chr12	112940602	112940873	+	112940769	112940873	A5SS	ENSMUST00000220567.2	known	0.09	3	31	3	31	y	0.00	0	29	0	29	n	0.04	1	22	1	22	n	0.00	0	27	0	27	n	0.00	0	49	0	49	n	0.00	0	16	0	16	n	0.03	1	31	1	31	n	0.00	0	19	0	19	n	0.00	0	24	0	24	n	0.04	2	46	2	46	y	0.04	1	23	1	23	n	0.08	2	22	2	22	y	ENSMUSG00000002803.15	Btbd6	chr12	protein_coding	BTB (POZ) domain containing 6
known_NIR_3838	chr12	112940991	112941136	+	112940991	112941124	A3SS	ENSMUST00000165079.8	known	0.00	0	23	0	23	n	0.00	0	18	0	18	n	0.05	1	20	1	20	n	0.00	0	44	0	44	n	0.02	1	43	1	43	n	0.00	0	17	0	17	n	0.00	0	40	0	40	n	0.00	0	18	0	18	n	0.06	2	30	2	30	y	0.02	1	52	1	52	n	0.00	0	30	0	30	n	0.00	0	28	0	28	n	ENSMUSG00000002803.15	Btbd6	chr12	protein_coding	BTB (POZ) domain containing 6
known_NIR_3839	chr12	112943377	112950079	-	112943377	112946647	A5SS&ES	ENSMUST00000011302.9	known	0.71	20	8	20	8	y	0.52	12	11	12	11	y	0.56	27	21	27	21	y	0.60	24	16	24	16	y	0.44	23	29	23	29	y	0.59	17	12	17	12	y	0.53	19	17	19	17	y	0.46	13	15	13	15	y	0.58	11	8	11	8	y	0.51	20	19	20	19	y	0.39	11	17	11	17	y	0.27	9	24	9	24	y	ENSMUSG00000011158.9	Brf1	chr12	protein_coding	BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit
known_NIR_3840	chr12	112947469	112950079	-	112943377	112950079	A3SS	ENSMUST00000223506.2	known	0.13	3	20	3	20	y	0.14	2	12	2	12	y	0.10	3	27	3	27	y	0.04	1	24	1	24	n	0.08	2	23	2	23	y	0.11	2	17	2	17	y	0.00	0	19	0	19	n	0.00	0	13	0	13	n	0.15	2	11	2	11	y	0.00	0	20	0	20	n	0.15	2	11	2	11	y	0.00	0	9	0	9	n	ENSMUSG00000011158.9	Brf1	chr12	protein_coding	BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit
known_NIR_3841	chr12	113024825	113025260	+	113024831	113025260	A5SS	ENSMUST00000223502.2	known	0.86	18	3	18	3	y	0.83	10	2	10	2	y	0.96	24	1	24	1	n	0.85	17	3	17	3	y	0.89	32	4	32	4	y	0.92	12	1	12	1	n	1.00	15	0	15	0	n	1.00	17	0	17	0	n	0.88	15	2	15	2	y	0.74	14	5	14	5	y	0.62	5	3	5	3	n	1.00	21	0	21	0	n	ENSMUSG00000021143.11	Pacs2	chr12	protein_coding	phosphofurin acidic cluster sorting protein 2
known_NIR_3842	chr12	113080701	113084447	+	113080701;113083881	113083831;113084447	ES	ENSMUST00000109727.9	known	0.75	19	6.5	19	5;8	y	0.57	13	10.0	13	9;11	y	0.54	26	22.5	26	25;20	y	0.62	28	17.0	28	17;17	y	0.47	28	32.0	28	30;34	y	0.51	18	17.5	18	17;18	y	0.60	24	16.0	24	15;17	y	0.62	16	10.0	16	9;11	y	0.50	20	20.0	20	24;16	y	0.55	38	31.5	38	33;30	y	0.50	19	19.0	19	21;17	y	0.50	25	25.5	25	26;25	y	ENSMUSG00000021144.15	Mta1	chr12	protein_coding	metastasis associated 1
known_NIR_3843	chr12	113094620	113094983	+	113094620	113094936	A3SS	ENSMUST00000109727.9	known	0.05	2	35	2	35	y	0.06	3	44	3	44	y	0.11	5	42	5	42	y	0.02	1	52	1	52	n	0.09	5	52	5	52	y	0.09	3	31	3	31	y	0.07	4	53	4	53	y	0.03	1	31	1	31	n	0.06	2	30	2	30	y	0.12	9	65	9	65	y	0.12	6	45	6	45	y	0.09	5	52	5	52	y	ENSMUSG00000021144.15	Mta1	chr12	protein_coding	metastasis associated 1
known_NIR_3844	chr12	113096957;113097196	113097161;113099417	+	113096957	113099417	cassetteExon	ENSMUST00000109727.9	known	0.80	31.5	8	30;33	8	y	0.82	45.0	10	47;43	10	y	0.80	52.5	13	56;49	13	y	0.75	39.5	13	43;36	13	y	0.93	56.5	4	54;59	4	y	0.97	28.5	1	32;25	1	n	0.95	58.0	3	57;59	3	y	0.89	25.5	3	27;24	3	y	0.92	33.0	3	37;29	3	y	0.84	71.5	14	76;67	14	y	0.87	48.0	7	52;44	7	y	0.78	56.0	16	60;52	16	y	ENSMUSG00000021144.15	Mta1	chr12	protein_coding	metastasis associated 1
known_NIR_3845	chr12	113104398	113107079	+	113104234	113107079	A5SS	ENSMUST00000084882.9	known	0.00	0	219	0	219	n	0.00	0	163	0	163	n	0.00	0	122	0	122	n	0.00	0	147	0	147	n	0.01	2	213	2	213	y	0.02	1	47	1	47	n	0.00	0	202	0	202	n	0.00	0	56	0	56	n	0.00	0	116	0	116	n	0.01	2	205	2	205	y	0.01	1	128	1	128	n	0.01	2	191	2	191	y	ENSMUSG00000006356.11	Crip2	chr12	protein_coding	cysteine rich protein 2
known_NIR_3846	chr12	11324112	11329606	+	11324112;11326366	11326261;11329606	ES	ENSMUST00000020931.6	known	0.00	0	11.0	0	6;16	n	0.00	0	6.0	0	5;7	n	0.07	2	26.5	2	30;23	y	0.00	0	18.0	0	17;19	n	0.14	5	29.5	5	26;33	y	0.00	0	9.5	0	12;7	n	0.12	3	21.0	3	20;22	y	0.09	2	19.5	2	22;17	y	0.06	1	16.0	1	19;13	n	0.09	2	20.5	2	19;22	y	0.00	0	9.5	0	12;7	n	0.04	1	22.5	1	25;20	n	ENSMUSG00000020608.8	Smc6	chr12	protein_coding	structural maintenance of chromosomes 6
known_NIR_3847	chr12	11355287	11356079	+	11351668	11356079	A5SS	ENSMUST00000020931.6	known	0.00	0	37	0	37	n	0.00	0	40	0	40	n	0.00	0	36	0	36	n	0.00	0	47	0	47	n	0.00	0	48	0	48	n	0.00	0	29	0	29	n	0.00	0	31	0	31	n	0.10	2	19	2	19	y	0.00	0	27	0	27	n	0.02	1	50	1	50	n	0.00	0	41	0	41	n	0.00	0	54	0	54	n	ENSMUSG00000020608.8	Smc6	chr12	protein_coding	structural maintenance of chromosomes 6
known_NIR_3848	chr12	116201679	116205299	-	116197066	116205299	A3SS	ENSMUST00000039349.8	known	0.22	2	7	2	7	n	0.43	3	4	3	4	n	0.00	0	8	0	8	n	0.67	2	1	2	1	n	0.13	2	13	2	13	y	0.11	1	8	1	8	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.18	2	9	2	9	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	ENSMUSG00000042050.9	Dync2i1	chr12	protein_coding	dynein 2 intermediate chain 1
known_NIR_3849	chr12	116282981	116284747	+	116282558	116284747	A5SS	ENSMUST00000100986.4	known	0.33	3	6	3	6	n	0.33	1	2	1	2	n	0.03	1	33	1	33	n	0.00	0	31	0	31	n	0.08	2	23	2	23	y	0.00	0	14	0	14	n	0.00	0	24	0	24	n	0.26	5	14	5	14	y	0.00	0	9	0	9	n	0.13	2	13	2	13	y	0.00	0	11	0	11	n	0.13	3	20	3	20	y	ENSMUSG00000021171.9	Esyt2	chr12	protein_coding	extended synaptotagmin-like protein 2
known_NIR_3850	chr12	116311934;116317509	116317447;116320732	+	116311934	116320732	cassetteExon	ENSMUST00000100986.4	known	0.03	0.5	15	1;0	15	n	0.00	0.0	14	0;0	14	n	0.01	0.5	37	0;1	37	n	0.02	0.5	23	1;0	23	n	0.13	3.5	24	3;4	24	y	0.04	1.0	26	0;2	26	n	0.00	0.0	34	0;0	34	n	0.00	0.0	20	0;0	20	n	0.03	0.5	16	1;0	16	n	0.03	1.0	31	0;2	31	n	0.07	1.5	20	1;2	20	n	0.00	0.0	42	0;0	42	n	ENSMUSG00000021171.9	Esyt2	chr12	protein_coding	extended synaptotagmin-like protein 2
known_NIR_3851	chr12	16618520	16623661	-	16618520;16621263	16621165;16623661	ES	ENSMUST00000067124.6	known	0.22	19	66.0	19	66;66	y	0.16	10	52.0	10	64;40	y	0.06	2	31.5	2	33;30	y	0.21	9	34.0	9	44;24	y	0.04	2	49.5	2	53;46	y	0.10	3	27.0	3	33;21	y	0.18	11	50.0	11	57;43	y	0.09	2	20.0	2	20;20	y	0.05	1	18.5	1	22;15	n	0.26	9	25.0	9	24;26	y	0.12	2	14.0	2	12;16	y	0.11	4	31.5	4	33;30	y	ENSMUSG00000020593.17	Lpin1	chr12	protein_coding	lipin 1
known_NIR_3852	chr12	16630905	16634509	-	16630905	16662554	A5SS	ENSMUST00000238839.2	known	1.00	16	0	16	0	n	1.00	12	0	12	0	n	-	-	-	-	-	-	1.00	15	0	15	0	n	1.00	9	0	9	0	n	1.00	4	0	4	0	n	0.29	4	10	4	10	y	1.00	2	0	2	0	n	1.00	1	0	1	0	n	1.00	4	0	4	0	n	1.00	6	0	6	0	n	1.00	8	0	8	0	n	ENSMUSG00000020593.17	Lpin1	chr12	protein_coding	lipin 1
known_NIR_3853	chr12	16630905	16639499	-	16630905	16639719	A5SS	ENSMUST00000067124.6	known	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	17	0	17	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.12	2	14	2	14	y	0.00	0	5	0	5	n	0.00	0	19	0	19	n	ENSMUSG00000020593.17	Lpin1	chr12	protein_coding	lipin 1
known_NIR_3854	chr12	16630905	16662554	-	16630905	16639719	5pMXE	ENSMUST00000067124.6	known	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	17	0	17	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.42	10	14	10	14	y	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.00	0	19	0	19	n	ENSMUSG00000020593.17	Lpin1	chr12	protein_coding	lipin 1
known_NIR_3855	chr12	16630905;16634652	16634509;16639719	-	16630905	16639719	cassetteExon	ENSMUST00000067124.6	known	0.49	11.5	12	16;7	12	y	0.43	10.0	13	12;8	13	y	0.19	2.5	11	0;5	11	n	0.45	14.0	17	15;13	17	y	0.40	8.0	12	9;7	12	y	0.18	3.0	14	4;2	14	y	0.18	3.0	14	4;2	14	y	0.29	2.0	5	2;2	5	n	0.20	1.0	4	1;1	4	n	0.15	2.5	14	4;1	14	n	0.44	4.0	5	6;2	5	y	0.21	5.0	19	8;2	19	y	ENSMUSG00000020593.17	Lpin1	chr12	protein_coding	lipin 1
known_NIR_3856	chr12	16861316	16862250	+	16861316	16866401	A3SS	ENSMUST00000220707.2	known	0.50	3	3	3	3	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.44	4	5	4	5	n	0.08	1	11	1	11	n	0.00	0	5	0	5	n	0.21	3	11	3	11	y	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	ENSMUSG00000057469.9	E2f6	chr12	protein_coding	E2F transcription factor 6
known_NIR_3857	chr12	16861316;16862373	16862250;16863848	+	16861316	16863848	cassetteExon	ENSMUST00000221541.2	known	0.18	2.0	9	3;1	9	n	0.08	0.5	6	0;1	6	n	0.00	0.0	7	0;0	7	n	0.21	3.0	11	4;2	11	y	0.02	0.5	27	1;0	27	n	0.12	1.0	7	0;2	7	n	0.10	1.5	13	3;0	13	n	0.11	0.5	4	1;0	4	n	0.07	0.5	7	0;1	7	n	0.14	1.0	6	0;2	6	n	0.14	1.5	9	1;2	9	n	0.03	0.5	15	0;1	15	n	ENSMUSG00000057469.9	E2f6	chr12	protein_coding	E2F transcription factor 6
known_NIR_3858	chr12	16861316;16863913	16863848;16866401	+	16861316	16866401	cassetteExon	ENSMUST00000220707.2	known	0.76	9.5	3	9;10	3	y	0.67	6.0	3	6;6	3	y	0.48	10.0	11	7;13	11	y	0.72	13.0	5	11;15	5	y	0.69	24.0	11	27;21	11	y	0.58	7.0	5	7;7	5	y	0.58	15.5	11	13;18	11	y	0.75	6.0	2	4;8	2	y	0.75	12.0	4	7;17	4	y	0.45	9.0	11	6;12	11	y	0.87	13.5	2	9;18	2	y	0.85	22.5	4	15;30	4	y	ENSMUSG00000057469.9	E2f6	chr12	protein_coding	E2F transcription factor 6
known_NIR_3859	chr12	17023150;17023611	17023441;17024843	+	17023150	17024843	cassetteExon	ENSMUST00000020904.8	known	0.00	0.0	11	0;0	11	n	0.00	0.0	6	0;0	6	n	0.00	0.0	24	0;0	24	n	0.00	0.0	16	0;0	16	n	0.00	0.0	30	0;0	30	n	0.00	0.0	9	0;0	9	n	0.18	4.5	21	6;3	21	y	0.00	0.0	11	0;0	11	n	0.00	0.0	18	0;0	18	n	0.00	0.0	27	0;0	27	n	0.00	0.0	15	0;0	15	n	0.00	0.0	19	0;0	19	n	ENSMUSG00000020580.11	Rock2	chr12	protein_coding	Rho-associated coiled-coil containing protein kinase 2
known_NIR_3860	chr12	17595169	17597186	+	17595169	17597097	A3SS	ENSMUST00000171737.3	known	0.00	0	76	0	76	n	0.00	0	71	0	71	n	0.00	0	141	0	141	n	0.00	0	165	0	165	n	0.00	0	160	0	160	n	0.00	0	129	0	129	n	0.01	1	123	1	123	n	0.00	0	95	0	95	n	0.00	0	89	0	89	n	0.00	0	143	0	143	n	0.01	1	144	1	144	n	0.02	3	156	3	156	y	ENSMUSG00000011179.9	Odc1	chr12	protein_coding	ornithine decarboxylase, structural 1
known_NIR_3861	chr12	17817300	17836148	+	17741047	17836148	A5SS	ENSMUST00000071858.5	known	0.35	9	17	9	17	y	0.09	2	20	2	20	y	0.12	3	22	3	22	y	0.35	6	11	6	11	y	0.32	11	23	11	23	y	0.58	7	5	7	5	y	0.39	7	11	7	11	y	0.37	7	12	7	12	y	0.44	8	10	8	10	y	0.50	14	14	14	14	y	0.29	4	10	4	10	y	0.46	6	7	6	7	y	ENSMUSG00000071379.3	Hpcal1	chr12	protein_coding	hippocalcin-like 1
known_NIR_3862	chr12	20927096;20964842	20964760;20970843	-	20927096	20970843	cassetteExon	ENSMUST00000143905.2	known	1.00	2.5	0	1;4	0	n	0.56	2.5	2	1;4	2	n	0.43	3.0	4	2;4	4	y	0.00	0.0	2	0;0	2	n	0.78	3.5	1	0;7	1	n	0.71	2.5	1	0;5	1	n	0.50	2.0	2	2;2	2	n	1.00	0.5	0	0;1	0	n	0.00	0.0	1	0;0	1	n	1.00	3.5	0	0;7	0	n	1.00	2.0	0	0;4	0	n	0.60	1.5	1	1;2	1	n	ENSMUSG00000085642.9	3110053B16Rik	chr12	transcribed_unprocessed_pseudogene	RIKEN cDNA 3110053B16 gene
known_NIR_3863	chr12	20950935	20952271	-	20927096	20952271	A3SS	ENSMUST00000144811.2	known	1.00	16	0	16	0	n	0.97	28	1	28	1	n	1.00	37	0	37	0	n	0.85	22	4	22	4	y	1.00	33	0	33	0	n	1.00	9	0	9	0	n	0.96	25	1	25	1	n	1.00	10	0	10	0	n	0.89	16	2	16	2	y	0.92	22	2	22	2	y	1.00	26	0	26	0	n	1.00	17	0	17	0	n	ENSMUSG00000069755.6	Zfp125	chr12	transcribed_unprocessed_pseudogene	zinc finger protein 125
known_NIR_3864	chr12	20964842	20970843	-	20964842;20965792	20965749;20970843	ES	ENSMUST00000140360.8	known	0.33	4	8.0	4	8;8	y	0.26	4	11.5	4	15;8	y	0.13	4	26.5	4	29;24	y	0.00	0	15.5	0	21;10	n	0.28	7	18.0	7	20;16	y	0.42	5	7.0	5	8;6	y	0.09	2	20.0	2	23;17	y	0.20	1	4.0	1	4;4	n	0.00	0	11.0	0	12;10	n	0.31	7	15.5	7	16;15	y	0.24	4	12.5	4	16;9	y	0.17	2	10.0	2	10;10	y	ENSMUSG00000085642.9	3110053B16Rik	chr12	transcribed_unprocessed_pseudogene	RIKEN cDNA 3110053B16 gene
known_NIR_3865	chr12	20965792	20970843	-	20927096	20970843	A3SS	ENSMUST00000143905.2	known	1.00	8	0	8	0	n	0.80	8	2	8	2	y	0.86	24	4	24	4	y	0.83	10	2	10	2	y	0.94	16	1	16	1	n	0.86	6	1	6	1	n	0.89	17	2	17	2	y	1.00	4	0	4	0	n	0.91	10	1	10	1	n	1.00	15	0	15	0	n	1.00	9	0	9	0	n	0.91	10	1	10	1	n	ENSMUSG00000085642.9	3110053B16Rik	chr12	transcribed_unprocessed_pseudogene	RIKEN cDNA 3110053B16 gene
known_NIR_3866	chr12	21329531	21335853	-	21329531	21336107	A5SS	ENSMUST00000232072.2	known	0.27	15	41	15	41	y	0.26	14	40	14	40	y	0.37	33	57	33	57	y	0.33	13	27	13	27	y	0.32	21	45	21	45	y	0.28	12	31	12	31	y	0.34	28	54	28	54	y	0.31	14	31	14	31	y	0.28	11	28	11	28	y	0.38	25	40	25	40	y	0.40	17	25	17	25	y	0.29	17	42	17	42	y	ENSMUSG00000062352.16	Itgb1bp1	chr12	protein_coding	integrin beta 1 binding protein 1
known_NIR_3867	chr12	21336545;21336951	21336806;21340249	+	21336545	21340249	cassetteExon	ENSMUST00000222474.2	known	0.01	0.5	41	0;1	41	n	0.00	0.0	31	0;0	31	n	0.04	2.0	49	2;2	49	y	0.02	1.0	50	1;1	50	n	0.00	0.0	72	0;0	72	n	0.00	0.0	38	0;0	38	n	0.00	0.0	42	0;0	42	n	0.00	0.0	34	0;0	34	n	0.00	0.0	29	0;0	29	n	0.01	0.5	62	0;1	62	n	0.00	0.0	35	0;0	35	n	0.00	0.0	54	0;0	54	n	ENSMUSG00000054309.10	Cpsf3	chr12	protein_coding	cleavage and polyadenylation specificity factor 3
known_NIR_3868	chr12	21355470	21356774	+	21355456	21356774	A5SS	ENSMUST00000067284.10	known	0.00	0	82	0	82	n	0.03	2	78	2	78	y	0.04	3	80	3	80	y	0.00	0	68	0	68	n	0.02	2	82	2	82	y	0.00	0	46	0	46	n	0.00	0	98	0	98	n	0.02	1	48	1	48	n	0.00	0	76	0	76	n	0.01	1	88	1	88	n	0.01	1	71	1	71	n	0.02	2	95	2	95	y	ENSMUSG00000054309.10	Cpsf3	chr12	protein_coding	cleavage and polyadenylation specificity factor 3
known_NIR_3869	chr12	21397450	21399786	-	21397431	21399786	A3SS	ENSMUST00000101551.10	known	0.09	2	21	2	21	y	0.00	0	8	0	8	n	0.04	1	24	1	24	n	0.00	0	18	0	18	n	0.00	0	28	0	28	n	0.00	0	17	0	17	n	0.00	0	22	0	22	n	0.05	1	18	1	18	n	0.00	0	5	0	5	n	0.06	1	16	1	16	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	ENSMUSG00000052593.17	Adam17	chr12	protein_coding	a disintegrin and metallopeptidase domain 17
known_NIR_3870	chr12	21404014	21423337	-	21404014;21411792	21411660;21423337	ES	ENSMUST00000101551.10	known	0.00	0	17.0	0	18;16	n	0.00	0	2.5	0	2;3	n	0.04	1	27.0	1	23;31	n	0.00	0	16.0	0	18;14	n	0.04	1	22.0	1	24;20	n	0.11	1	8.5	1	5;12	n	0.00	0	17.5	0	22;13	n	0.19	3	12.5	3	16;9	y	0.00	0	13.5	0	15;12	n	0.07	1	12.5	1	10;15	n	0.00	0	4.5	0	2;7	n	0.07	1	13.5	1	19;8	n	ENSMUSG00000052593.17	Adam17	chr12	protein_coding	a disintegrin and metallopeptidase domain 17
known_NIR_3871	chr12	21441416;21441800	21441718;21444966	-	21441416	21444966	cassetteExon	ENSMUST00000135088.9	known	0.00	0.5	266	0;1	266	n	0.00	0.5	272	0;1	272	n	0.01	2.5	343	2;3	343	y	0.00	1.5	320	0;3	320	n	0.00	1.0	366	1;1	366	n	0.00	0.0	193	0;0	193	n	0.01	3.5	333	2;5	333	y	0.01	1.0	184	2;0	184	n	0.00	0.0	213	0;0	213	n	0.01	2.5	379	1;4	379	n	0.00	1.0	309	1;1	309	n	0.01	3.5	356	6;1	356	n	ENSMUSG00000076432.14	Ywhaq	chr12	protein_coding	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta
known_NIR_3872	chr12	24555033	24559453	+	24555033;24559180	24559083;24559453	ES	ENSMUST00000075954.9	known	0.00	0	6.0	0	3;9	n	0.00	0	2.0	0	2;2	n	0.14	2	12.5	2	13;12	y	0.38	3	5.0	3	0;10	n	0.39	7	11.0	7	11;11	y	0.40	2	3.0	2	0;6	n	0.14	2	12.0	2	9;15	y	0.33	1	2.0	1	1;3	n	0.00	0	8.5	0	6;11	n	0.18	1	4.5	1	4;5	n	0.00	0	7.5	0	5;10	n	0.22	2	7.0	2	4;10	y	ENSMUSG00000059669.9	Taf1b	chr12	protein_coding	TATA-box binding protein associated factor, RNA polymerase I, B
known_NIR_3873	chr12	24716180	24716766	-	24716251	24716766	A3SS	ENSMUST00000074163.13	known	0.88	7	1	7	1	n	0.80	8	2	8	2	y	-	-	-	-	-	-	1.00	6	0	6	0	n	0.80	4	1	4	1	n	1.00	1	0	1	0	n	0.75	3	1	3	1	n	1.00	3	0	3	0	n	1.00	4	0	4	0	n	0.92	12	1	12	1	n	0.83	15	3	15	3	y	0.67	6	3	6	3	n	ENSMUSG00000062563.16	Cys1	chr12	protein_coding	cystin 1
known_NIR_3874	chr12	24716220	24716766	-	24716180	24716766	A3SS	ENSMUST00000186602.7	known	0.00	0	7	0	7	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.12	2	15	2	15	y	0.00	0	6	0	6	n	ENSMUSG00000062563.16	Cys1	chr12	protein_coding	cystin 1
known_NIR_3875	chr12	25088549;25090568	25090455;25101094	+	25088549	25101094	cassetteExon	ENSMUST00000220459.2	known	0.92	35.0	3	29;41	3	y	0.88	23.0	3	16;30	3	y	0.97	68.5	2	57;80	2	y	0.85	57.0	10	58;56	10	y	0.92	73.5	6	65;82	6	y	0.98	39.5	1	43;36	1	n	0.95	56.5	3	49;64	3	y	0.90	35.5	4	39;32	4	y	1.00	39.0	0	32;46	0	n	0.89	77.0	10	74;80	10	y	0.95	40.5	2	42;39	2	y	0.94	50.0	3	45;55	3	y	ENSMUSG00000036333.12	Kidins220	chr12	protein_coding	kinase D-interacting substrate 220
known_NIR_3876	chr12	25090568	25091245	+	25090568	25101094	A3SS	ENSMUST00000222013.2	known	0.00	0	41	0	41	n	0.00	0	30	0	30	n	0.00	0	80	0	80	n	0.00	0	56	0	56	n	0.00	0	82	0	82	n	0.00	0	36	0	36	n	0.03	2	64	2	64	y	0.00	0	32	0	32	n	0.00	0	46	0	46	n	0.00	0	80	0	80	n	0.00	0	39	0	39	n	0.00	0	55	0	55	n	ENSMUSG00000036333.12	Kidins220	chr12	protein_coding	kinase D-interacting substrate 220
known_NIR_3877	chr12	28645065	28645243	-	28645047	28645243	A3SS	ENSMUST00000036136.9	known	0.21	10	37	10	37	y	0.21	6	22	6	22	y	0.26	8	23	8	23	y	0.29	9	22	9	22	y	0.09	4	39	4	39	y	0.28	5	13	5	13	y	0.19	11	46	11	46	y	0.35	7	13	7	13	y	0.16	3	16	3	16	y	0.16	7	37	7	37	y	0.24	14	45	14	45	y	0.17	9	44	9	44	y	ENSMUSG00000036655.9	Colec11	chr12	protein_coding	collectin sub-family member 11
known_NIR_3878	chr12	28649114;28653352	28653220;28662862	-	28649114	28662862	cassetteExon	ENSMUST00000036136.9	known	0.00	0.0	30	0;0	30	n	0.00	0.0	33	0;0	33	n	0.02	0.5	21	1;0	21	n	0.06	1.5	25	1;2	25	n	0.05	1.5	26	2;1	26	n	0.00	0.0	12	0;0	12	n	0.09	3.0	30	3;3	30	y	0.08	1.0	12	2;0	12	n	0.06	1.0	16	0;2	16	n	0.02	0.5	27	0;1	27	n	0.03	1.5	42	3;0	42	n	0.04	1.0	23	2;0	23	n	ENSMUSG00000036655.9	Colec11	chr12	protein_coding	collectin sub-family member 11
known_NIR_3879	chr12	28725548	28727777	+	28725371	28727777	A5SS	ENSMUST00000020957.13	known	0.00	0	351	0	351	n	0.01	2	325	2	325	y	0.00	1	271	1	271	n	0.00	0	493	0	493	n	0.00	1	525	1	525	n	0.01	1	178	1	178	n	0.01	6	499	6	499	y	0.00	1	242	1	242	n	0.00	0	296	0	296	n	0.00	2	519	2	519	y	0.01	2	345	2	345	y	0.00	2	471	2	471	y	ENSMUSG00000020629.13	Adi1	chr12	protein_coding	acireductone dioxygenase 1
known_NIR_3880	chr12	28751135	28751535	-	28747241	28751535	A3SS	ENSMUST00000168129.10	known	0.00	0	36	0	36	n	0.00	0	31	0	31	n	0.16	4	21	4	21	y	0.00	0	36	0	36	n	0.12	3	23	3	23	y	0.07	2	26	2	26	y	0.04	1	27	1	27	n	0.00	0	24	0	24	n	0.00	0	24	0	24	n	0.04	2	49	2	49	y	0.00	0	34	0	34	n	0.00	0	35	0	35	n	ENSMUSG00000020628.17	Trappc12	chr12	protein_coding	trafficking protein particle complex 12
known_NIR_3881	chr12	28760386	28761871	-	28753597	28761871	A3SS	ENSMUST00000168129.10	known	0.07	2	25	2	25	y	0.22	7	25	7	25	y	0.08	2	24	2	24	y	0.03	1	28	1	28	n	0.14	6	36	6	36	y	0.05	1	18	1	18	n	0.11	4	31	4	31	y	0.23	3	10	3	10	y	0.20	7	28	7	28	y	0.07	3	42	3	42	y	0.12	4	28	4	28	y	0.06	2	32	2	32	y	ENSMUSG00000020628.17	Trappc12	chr12	protein_coding	trafficking protein particle complex 12
known_NIR_3882	chr12	28797535	28800161	-	28797535	28800328	A5SS	ENSMUST00000168129.10	known	0.36	8	14	8	14	y	0.62	5	3	5	3	n	0.40	8	12	8	12	y	0.41	14	20	14	20	y	0.53	16	14	16	14	y	0.30	6	14	6	14	y	0.14	2	12	2	12	y	0.19	3	13	3	13	y	0.42	8	11	8	11	y	0.37	11	19	11	19	y	0.19	3	13	3	13	y	0.44	12	15	12	15	y	ENSMUSG00000020628.17	Trappc12	chr12	protein_coding	trafficking protein particle complex 12
known_NIR_3883	chr12	28802003	28802419	+	28802003	28810069	A3SS	ENSMUST00000221877.2	known	0.00	0	20	0	20	n	0.11	2	16	2	16	y	0.04	1	25	1	25	n	0.00	0	23	0	23	n	0.11	3	24	3	24	y	0.00	0	16	0	16	n	0.05	1	20	1	20	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.00	0	24	0	24	n	0.09	2	20	2	20	y	0.04	1	25	1	25	n	ENSMUSG00000036613.9	Eipr1	chr12	protein_coding	EARP complex and GARP complex interacting protein 1
known_NIR_3884	chr12	29213846	29216191	+	29213846;29214909	29214760;29216191	ES	ENSMUST00000220554.2	known	0.80	8	2.0	8	0;4	n	0.86	3	0.5	3	1;0	n	0.95	10	0.5	10	0;1	n	0.93	7	0.5	7	0;1	n	0.93	21	1.5	21	1;2	n	0.60	3	2.0	3	0;4	n	0.87	30	4.5	30	6;3	y	0.74	10	3.5	10	5;2	y	0.88	14	2.0	14	0;4	n	0.80	12	3.0	12	0;6	n	1.00	17	0.0	17	0;0	n	0.92	11	1.0	11	0;2	n	ENSMUSG00000113986.2	Gm31333	chr12	lncRNA	predicted gene, 31333
known_NIR_3885	chr12	30245647	30251274	-	30245647	30251285	A5SS	ENSMUST00000142046.8	known	0.88	38	5	38	5	y	0.88	35	5	35	5	y	1.00	2	0	2	0	n	0.96	44	2	44	2	y	0.91	21	2	21	2	y	1.00	6	0	6	0	n	0.94	34	2	34	2	y	1.00	5	0	5	0	n	0.84	32	6	32	6	y	0.97	56	2	56	2	y	0.87	58	9	58	9	y	0.83	55	11	55	11	y	ENSMUSG00000020672.15	Sntg2	chr12	protein_coding	syntrophin, gamma 2
known_NIR_3886	chr12	30357382	30362535	-	30357377	30362535	A3SS	ENSMUST00000142046.8	known	0.82	9	2	9	2	y	0.70	7	3	7	3	y	1.00	1	0	1	0	n	0.73	16	6	16	6	y	0.75	12	4	12	4	y	1.00	1	0	1	0	n	0.38	6	10	6	10	y	1.00	1	0	1	0	n	0.64	9	5	9	5	y	0.48	10	11	10	11	y	0.61	11	7	11	7	y	0.79	15	4	15	4	y	ENSMUSG00000020672.15	Sntg2	chr12	protein_coding	syntrophin, gamma 2
known_NIR_3887	chr12	30359727	30362535	-	30357377	30362535	A3SS	ENSMUST00000142046.8	known	0.88	15	2	15	2	y	0.87	20	3	20	3	y	1.00	5	0	5	0	n	0.81	26	6	26	6	y	0.64	7	4	7	4	y	1.00	2	0	2	0	n	0.57	13	10	13	10	y	1.00	1	0	1	0	n	0.85	29	5	29	5	y	0.74	31	11	31	11	y	0.73	19	7	19	7	y	0.80	16	4	16	4	y	ENSMUSG00000020672.15	Sntg2	chr12	protein_coding	syntrophin, gamma 2
known_NIR_3888	chr12	30359727	30362535	-	30357382	30362535	A3SS	ENSMUST00000021004.14	known	0.62	15	9	15	9	y	0.74	20	7	20	7	y	0.83	5	1	5	1	n	0.62	26	16	26	16	y	0.37	7	12	7	12	y	0.67	2	1	2	1	n	0.68	13	6	13	6	y	0.50	1	1	1	1	n	0.76	29	9	29	9	y	0.76	31	10	31	10	y	0.63	19	11	19	11	y	0.52	16	15	16	15	y	ENSMUSG00000020672.15	Sntg2	chr12	protein_coding	syntrophin, gamma 2
known_NIR_3889	chr12	30947805	30954869	-	30947805	30954717	A5SS	ENSMUST00000219697.2	known	0.42	74	102	74	102	y	0.53	90	81	90	81	y	0.62	112	70	112	70	y	0.43	95	127	95	127	y	0.52	117	109	117	109	y	0.62	57	35	57	35	y	0.48	99	109	99	109	y	0.57	62	47	62	47	y	0.44	67	85	67	85	y	0.42	107	147	107	147	y	0.46	92	106	92	106	y	0.47	114	130	114	130	y	ENSMUSG00000044573.17	Acp1	chr12	protein_coding	acid phosphatase 1, soluble
known_NIR_3890	chr12	30947805;30954830	30954717;30955068	-	30947805;30954982	30954869;30955068	MXE	ENSMUST00000062740.15	known	0.49	80.0	83.0	102;58	74;92	y	0.45	70.0	84.5	81;59	90;79	y	0.33	59.5	119.5	70;49	112;127	y	0.47	92.0	104.0	127;57	95;113	y	0.43	93.5	122.0	109;78	117;127	y	0.36	29.5	52.5	35;24	57;48	y	0.50	90.5	90.5	109;72	99;82	y	0.38	37.5	60.0	47;28	62;58	y	0.51	75.5	74.0	85;66	67;81	y	0.51	124.0	118.0	147;101	107;129	y	0.49	89.5	95.0	106;73	92;98	y	0.50	112.0	112.5	130;94	114;111	y	ENSMUSG00000044573.17	Acp1	chr12	protein_coding	acid phosphatase 1, soluble
known_NIR_3891	chr12	30954830	30955068	-	30954982	30955068	A3SS	ENSMUST00000219697.2	known	0.39	58	92	58	92	y	0.43	59	79	59	79	y	0.28	49	127	49	127	y	0.34	57	113	57	113	y	0.38	78	127	78	127	y	0.33	24	48	24	48	y	0.47	72	82	72	82	y	0.33	28	58	28	58	y	0.45	66	81	66	81	y	0.44	101	129	101	129	y	0.43	73	98	73	98	y	0.46	94	111	94	111	y	ENSMUSG00000044573.17	Acp1	chr12	protein_coding	acid phosphatase 1, soluble
known_NIR_3892	chr12	30962226;30963100	30962956;30972234	+	30962226	30972234	cassetteExon	ENSMUST00000142693.8	known	0.00	0.0	23	0;0	23	n	0.00	0.0	16	0;0	16	n	0.00	0.0	19	0;0	19	n	0.11	2.5	21	3;2	21	y	0.00	0.0	35	0;0	35	n	0.00	0.0	9	0;0	9	n	0.04	1.0	25	2;0	25	n	0.00	0.0	8	0;0	8	n	0.00	0.0	21	0;0	21	n	0.00	0.0	30	0;0	30	n	0.00	0.0	25	0;0	25	n	0.00	0.0	43	0;0	43	n	ENSMUSG00000020669.16	Sh3yl1	chr12	protein_coding	Sh3 domain YSC-like 1
known_NIR_3893	chr12	31542178	31544581	-	31542175	31544581	A3SS	ENSMUST00000185739.8	known	1.00	7	0	7	0	n	0.78	7	2	7	2	n	1.00	3	0	3	0	n	0.80	8	2	8	2	y	0.78	14	4	14	4	y	0.83	5	1	5	1	n	0.50	2	2	2	2	n	1.00	7	0	7	0	n	1.00	3	0	3	0	n	1.00	15	0	15	0	n	0.62	5	3	5	3	n	1.00	12	0	12	0	n	ENSMUSG00000020659.17	Cbll1	chr12	protein_coding	Casitas B-lineage lymphoma-like 1
known_NIR_3894	chr12	31542178	31544581	-	31542178	31544590	A5SS	ENSMUST00000064240.14	known	0.88	7	1	7	1	n	0.54	7	6	7	6	y	0.60	3	2	3	2	n	0.57	8	6	8	6	y	1.00	14	0	14	0	n	0.62	5	3	5	3	n	0.33	2	4	2	4	n	0.58	7	5	7	5	y	1.00	3	0	3	0	n	0.88	15	2	15	2	y	0.83	5	1	5	1	n	0.80	12	3	12	3	y	ENSMUSG00000020659.17	Cbll1	chr12	protein_coding	Casitas B-lineage lymphoma-like 1
known_NIR_3895	chr12	31984440;31987280	31986971;31987617	-	31984440	31987617	cassetteExon	ENSMUST00000176643.8	known	0.96	108.5	5	98;119	5	y	1.00	84.0	0	90;78	0	n	1.00	228.0	0	237;219	0	n	0.99	180.5	2	170;191	2	y	0.99	220.5	3	233;208	3	y	0.99	109.5	1	109;110	1	n	1.00	202.0	0	202;202	0	n	1.00	121.5	0	109;134	0	n	1.00	108.0	0	104;112	0	n	0.98	200.5	4	213;188	4	y	0.98	116.5	2	128;105	2	y	0.99	183.0	1	187;179	1	n	ENSMUSG00000002996.18	Hbp1	chr12	protein_coding	high mobility group box transcription factor 1
known_NIR_3896	chr12	31994011	32000104	-	31994011	32000130	A5SS	ENSMUST00000176520.8	known	0.00	0	1	0	1	n	1.00	3	0	3	0	n	0.42	5	7	5	7	y	0.50	3	3	3	3	n	0.83	5	1	5	1	n	1.00	1	0	1	0	n	0.62	5	3	5	3	n	0.00	0	3	0	3	n	0.67	4	2	4	2	n	0.50	3	3	3	3	n	-	-	-	-	-	-	0.50	3	3	3	3	n	ENSMUSG00000002996.18	Hbp1	chr12	protein_coding	high mobility group box transcription factor 1
known_NIR_3897	chr12	31994011	32000104	-	31994011	32000195	A5SS	ENSMUST00000172314.9	known	0.00	0	41	0	41	n	0.18	3	14	3	14	y	0.07	5	63	5	63	y	0.03	3	90	3	90	y	0.06	5	75	5	75	y	0.03	1	28	1	28	n	0.06	5	74	5	74	y	0.00	0	51	0	51	n	0.10	4	35	4	35	y	0.05	3	53	3	53	y	0.00	0	36	0	36	n	0.04	3	76	3	76	y	ENSMUSG00000002996.18	Hbp1	chr12	protein_coding	high mobility group box transcription factor 1
known_NIR_3898	chr12	31994011	32000130	-	31994011	32000195	A5SS	ENSMUST00000172314.9	known	0.02	1	41	1	41	n	0.00	0	14	0	14	n	0.10	7	63	7	63	y	0.03	3	90	3	90	y	0.01	1	75	1	75	n	0.00	0	28	0	28	n	0.04	3	74	3	74	y	0.06	3	51	3	51	y	0.05	2	35	2	35	y	0.05	3	53	3	53	y	0.00	0	36	0	36	n	0.04	3	76	3	76	y	ENSMUSG00000002996.18	Hbp1	chr12	protein_coding	high mobility group box transcription factor 1
known_NIR_3899	chr12	32870908	32880166	+	32870625	32880166	A5SS	ENSMUST00000020886.9	known	0.11	7	59	7	59	y	0.05	3	52	3	52	y	0.01	3	441	3	441	y	0.08	9	98	9	98	y	0.08	7	83	7	83	y	0.00	0	78	0	78	n	0.04	4	94	4	94	y	0.05	3	63	3	63	y	0.15	9	53	9	53	y	0.07	8	115	8	115	y	0.06	5	74	5	74	y	0.04	4	86	4	86	y	ENSMUSG00000020572.9	Nampt	chr12	protein_coding	nicotinamide phosphoribosyltransferase
known_NIR_3900	chr12	3287660	3288064	+	3287660	3288029	A3SS	ENSMUST00000178074.8	known	0.22	7	25	7	25	y	0.31	4	9	4	9	y	0.18	4	18	4	18	y	0.16	4	21	4	21	y	0.17	6	29	6	29	y	0.17	1	5	1	5	n	0.21	7	26	7	26	y	0.15	2	11	2	11	y	0.10	2	19	2	19	y	0.27	6	16	6	16	y	0.19	5	21	5	21	y	0.30	10	23	10	23	y	ENSMUSG00000079179.10	Rab10os	chr12	lncRNA	RAB10, member RAS oncogene family, opposite strand
known_NIR_3901	chr12	32880252	32883031	+	32880322	32883031	A5SS	ENSMUST00000220200.2	known	0.08	6	69	6	69	y	0.12	8	57	8	57	y	0.08	44	501	44	501	y	0.03	3	109	3	109	y	0.09	10	101	10	101	y	0.07	9	121	9	121	y	0.11	12	101	12	101	y	0.04	4	86	4	86	y	0.13	10	67	10	67	y	0.04	7	153	7	153	y	0.09	8	84	8	84	y	0.11	16	132	16	132	y	ENSMUSG00000020572.9	Nampt	chr12	protein_coding	nicotinamide phosphoribosyltransferase
known_NIR_3902	chr12	3288112	3291522	+	3288112	3288834	3pMXE	ENSMUST00000179908.8	known	0.08	1	12	1	12	n	0.35	6	11	6	11	y	0.64	7	4	7	4	y	0.48	10	11	10	11	y	0.46	13	15	13	15	y	1.00	6	0	6	0	n	0.52	14	13	14	13	y	0.40	6	9	6	9	y	0.27	4	11	4	11	y	0.24	4	13	4	13	y	0.20	4	16	4	16	y	0.50	6	6	6	6	y	ENSMUSG00000079179.10	Rab10os	chr12	lncRNA	RAB10, member RAS oncogene family, opposite strand
known_NIR_3903	chr12	3288112	3291522	+	3288112;3289009	3288834;3291522	ES	ENSMUST00000177896.8	known	0.11	1	8.5	1	12;5	n	0.40	6	9.0	6	11;7	y	0.50	7	7.0	7	4;10	y	0.57	10	7.5	10	11;4	y	0.48	13	14.0	13	15;13	y	0.86	6	1.0	6	0;2	n	0.58	14	10.0	14	13;7	y	0.50	6	6.0	6	9;3	y	0.32	4	8.5	4	11;6	y	0.28	4	10.5	4	13;8	y	0.24	4	13.0	4	16;10	y	0.52	6	5.5	6	6;5	y	ENSMUSG00000079179.10	Rab10os	chr12	lncRNA	RAB10, member RAS oncogene family, opposite strand
known_NIR_3904	chr12	3297438	3299739	+	3297438	3299867	A3SS	ENSMUST00000177896.8	known	0.74	14	5	14	5	y	1.00	4	0	4	0	n	0.85	23	4	23	4	y	0.79	11	3	11	3	y	0.88	14	2	14	2	y	0.93	13	1	13	1	n	0.73	16	6	16	6	y	0.67	8	4	8	4	y	0.78	7	2	7	2	n	0.50	12	12	12	12	y	0.60	6	4	6	4	y	1.00	21	0	21	0	n	ENSMUSG00000079179.10	Rab10os	chr12	lncRNA	RAB10, member RAS oncogene family, opposite strand
known_NIR_3905	chr12	33004981	33015372	+	33004358	33015372	A5SS	ENSMUST00000076698.13	known	0.01	1	112	1	112	n	0.00	0	81	0	81	n	0.00	0	272	0	272	n	0.02	3	193	3	193	y	0.01	3	234	3	234	y	0.00	0	115	0	115	n	0.00	0	217	0	217	n	0.00	0	154	0	154	n	0.00	0	107	0	107	n	0.00	0	192	0	192	n	0.00	0	112	0	112	n	0.00	1	208	1	208	n	ENSMUSG00000020570.16	Sypl	chr12	protein_coding	synaptophysin-like protein
known_NIR_3906	chr12	33015499	33017635	+	33015499	33017535	A3SS	ENSMUST00000076698.13	known	0.00	0	100	0	100	n	0.14	11	69	11	69	y	0.00	0	242	0	242	n	0.03	4	152	4	152	y	0.00	0	171	0	171	n	0.00	0	115	0	115	n	0.00	0	175	0	175	n	0.00	0	132	0	132	n	0.00	0	111	0	111	n	0.07	12	156	12	156	y	0.00	0	115	0	115	n	0.00	0	187	0	187	n	ENSMUSG00000020570.16	Sypl	chr12	protein_coding	synaptophysin-like protein
known_NIR_3907	chr12	33015499;33016620	33016449;33017535	+	33015499	33017535	cassetteExon	ENSMUST00000076698.13	known	0.00	0.0	100	0;0	100	n	0.00	0.0	69	0;0	69	n	0.00	0.0	242	0;0	242	n	0.01	2.0	152	1;3	152	n	0.02	3.5	171	0;7	171	n	0.00	0.0	115	0;0	115	n	0.00	0.0	175	0;0	175	n	0.00	0.0	132	0;0	132	n	0.00	0.0	111	0;0	111	n	0.00	0.0	156	0;0	156	n	0.03	3.5	115	3;4	115	y	0.01	2.5	187	1;4	187	n	ENSMUSG00000020570.16	Sypl	chr12	protein_coding	synaptophysin-like protein
known_NIR_3908	chr12	33017742	33019180	+	33017742	33024127	A3SS	ENSMUST00000076698.13	known	0.00	0	137	0	137	n	0.00	0	133	0	133	n	0.01	3	270	3	270	y	0.00	0	175	0	175	n	0.01	3	209	3	209	y	0.00	0	142	0	142	n	0.00	0	219	0	219	n	0.01	2	152	2	152	y	0.00	0	119	0	119	n	0.02	4	203	4	203	y	0.03	4	153	4	153	y	0.02	3	185	3	185	y	ENSMUSG00000020570.16	Sypl	chr12	protein_coding	synaptophysin-like protein
known_NIR_3909	chr12	33197914;33198500	33198432;33267711	+	33197914	33267711	cassetteExon	ENSMUST00000077456.13	known	0.83	15.0	3	19;11	3	y	1.00	6.0	0	6;6	0	n	1.00	1.0	0	0;2	0	n	0.75	12.0	4	12;12	4	y	0.52	7.5	7	7;8	7	y	0.88	7.5	1	9;6	1	n	0.60	3.0	2	6;0	2	n	0.45	2.5	3	4;1	3	n	1.00	6.5	0	8;5	0	n	0.90	17.5	2	15;20	2	y	0.81	8.5	2	7;10	2	y	0.65	7.5	4	7;8	4	y	ENSMUSG00000020564.18	Atxn7l1	chr12	protein_coding	ataxin 7-like 1
known_NIR_3910	chr12	33267815	33375910	+	33267815	33299850	3pMXE	ENSMUST00000077456.13	known	0.14	2	12	2	12	y	0.00	0	11	0	11	n	0.60	3	2	3	2	n	0.06	1	16	1	16	n	0.00	0	10	0	10	n	0.20	1	4	1	4	n	0.30	3	7	3	7	y	0.25	1	3	1	3	n	0.20	2	8	2	8	y	0.30	3	7	3	7	y	0.09	1	10	1	10	n	0.00	0	12	0	12	n	ENSMUSG00000020564.18	Atxn7l1	chr12	protein_coding	ataxin 7-like 1
known_NIR_3911	chr12	33364390	33375910	+	33352627	33375910	A5SS	ENSMUST00000090597.11	known	0.50	6	6	6	6	y	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.50	2	2	2	2	n	0.00	0	3	0	3	n	ENSMUSG00000020564.18	Atxn7l1	chr12	protein_coding	ataxin 7-like 1
known_NIR_3912	chr12	33417637	33420982	+	33417913	33420982	A5SS	ENSMUST00000146040.9	known	0.60	3	2	3	2	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.18	3	14	3	14	y	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.33	3	6	3	6	n	0.00	0	6	0	6	n	0.12	1	7	1	7	n	0.00	0	12	0	12	n	0.13	2	13	2	13	y	ENSMUSG00000020564.18	Atxn7l1	chr12	protein_coding	ataxin 7-like 1
known_NIR_3913	chr12	33421056	33422867	+	33421056	33422864	A3SS	ENSMUST00000146040.9	known	0.50	2	2	2	2	n	0.11	1	8	1	8	n	0.33	1	2	1	2	n	0.33	2	4	2	4	n	0.28	8	21	8	21	y	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.18	2	9	2	9	y	0.25	3	9	3	9	y	ENSMUSG00000020564.18	Atxn7l1	chr12	protein_coding	ataxin 7-like 1
known_NIR_3914	chr12	3456711	3457644	-	3456711	3457701	A5SS	ENSMUST00000168012.3	known	0.67	4	2	4	2	n	0.50	1	1	1	1	n	0.00	0	8	0	8	n	0.50	2	2	2	2	n	0.60	6	4	6	4	y	0.57	4	3	4	3	n	0.80	4	1	4	1	n	1.00	6	0	6	0	n	0.25	2	6	2	6	n	0.64	9	5	9	5	y	0.33	1	2	1	2	n	0.75	6	2	6	2	n	ENSMUSG00000071456.7	1110002L01Rik	chr12	lncRNA	RIKEN cDNA 1110002L01 gene
known_NIR_3915	chr12	35141669	35148229	+	35141669;35142912	35142824;35148229	ES	ENSMUST00000221272.2	known	0.17	3	15.0	3	18;12	y	0.00	0	8.0	0	8;8	n	0.00	0	30.0	0	36;24	n	0.00	0	21.0	0	22;20	n	0.00	0	27.0	0	30;24	n	0.00	0	23.0	0	31;15	n	0.03	1	28.5	1	30;27	n	0.04	1	26.5	1	25;28	n	0.00	0	20.0	0	25;15	n	0.04	1	26.0	1	24;28	n	0.07	1	13.5	1	13;14	n	0.04	1	23.5	1	28;19	n	ENSMUSG00000020590.17	Snx13	chr12	protein_coding	sorting nexin 13
known_NIR_3916	chr12	35162503	35169732	+	35162503	35169765	A3SS	ENSMUST00000221272.2	known	0.27	6	16	6	16	y	0.30	3	7	3	7	y	0.44	27	35	27	35	y	0.37	13	22	13	22	y	0.24	11	35	11	35	y	0.48	13	14	13	14	y	0.53	17	15	17	15	y	0.50	17	17	17	17	y	0.30	8	19	8	19	y	0.54	20	17	20	17	y	0.44	15	19	15	19	y	0.66	25	13	25	13	y	ENSMUSG00000020590.17	Snx13	chr12	protein_coding	sorting nexin 13
known_NIR_3917	chr12	35183379	35188025	+	35183379	35183514	3pMXE	ENSMUST00000163677.3	known	1.00	22	0	22	0	n	1.00	20	0	20	0	n	1.00	66	0	66	0	n	1.00	39	0	39	0	n	1.00	56	0	56	0	n	1.00	21	0	21	0	n	0.97	58	2	58	2	y	1.00	36	0	36	0	n	1.00	30	0	30	0	n	1.00	38	0	38	0	n	1.00	24	0	24	0	n	1.00	45	0	45	0	n	ENSMUSG00000020590.17	Snx13	chr12	protein_coding	sorting nexin 13
known_NIR_3918	chr12	3524613	3534445	+	3526169	3534445	5pMXE	ENSMUST00000219208.2	known	0.40	6	9	6	9	y	0.50	6	6	6	6	y	0.33	5	10	5	10	y	0.38	9	15	9	15	y	0.67	8	4	8	4	y	0.17	1	5	1	5	n	0.57	4	3	4	3	n	0.50	6	6	6	6	y	0.54	7	6	7	6	y	0.69	9	4	9	4	y	0.20	1	4	1	4	n	0.39	9	14	9	14	y	ENSMUSG00000037486.19	Asxl2	chr12	protein_coding	ASXL transcriptional regulator 2
known_NIR_3919	chr12	3524613;3526169	3526026;3534445	+	3524613	3534445	cassetteExon	ENSMUST00000111215.10	known	0.56	7.5	6	6;9	6	y	0.56	7.5	6	9;6	6	y	0.62	8.0	5	6;10	5	y	0.53	10.0	9	5;15	9	y	0.38	5.0	8	6;4	8	y	0.86	6.0	1	7;5	1	n	0.56	5.0	4	7;3	4	y	0.40	4.0	6	2;6	6	y	0.33	3.5	7	1;6	7	n	0.44	7.0	9	10;4	9	y	0.80	4.0	1	4;4	1	n	0.50	9.0	9	4;14	9	y	ENSMUSG00000037486.19	Asxl2	chr12	protein_coding	ASXL transcriptional regulator 2
known_NIR_3920	chr12	35562947	35576680	-	35562947;35565123	35565020;35576680	ES	ENSMUST00000116436.9	known	0.00	0	17.0	0	17;17	n	0.00	0	13.0	0	13;13	n	0.00	0	47.0	0	41;53	n	0.00	0	23.5	0	21;26	n	0.00	0	51.5	0	56;47	n	0.00	0	20.0	0	23;17	n	0.00	0	36.0	0	34;38	n	0.00	0	21.0	0	21;21	n	0.04	1	22.0	1	20;24	n	0.05	2	38.5	2	40;37	y	0.00	0	11.0	0	12;10	n	0.00	0	26.5	0	22;31	n	ENSMUSG00000019256.18	Ahr	chr12	protein_coding	aryl-hydrocarbon receptor
known_NIR_3921	chr12	35562947	35576680	-	35565123	35576680	3pMXE	ENSMUST00000173414.2	known	0.00	0	17	0	17	n	0.00	0	13	0	13	n	0.00	0	53	0	53	n	0.00	0	26	0	26	n	0.00	0	47	0	47	n	0.00	0	17	0	17	n	0.00	0	38	0	38	n	0.00	0	21	0	21	n	0.04	1	24	1	24	n	0.05	2	37	2	37	y	0.00	0	10	0	10	n	0.00	0	31	0	31	n	ENSMUSG00000019256.18	Ahr	chr12	protein_coding	aryl-hydrocarbon receptor
known_NIR_3922	chr12	36150742	36154261	-	36143088	36154261	A3SS	ENSMUST00000020856.6	known	0.00	0	11	0	11	n	0.00	0	29	0	29	n	0.02	3	139	3	139	y	0.05	1	21	1	21	n	0.00	0	25	0	25	n	0.10	2	18	2	18	y	0.04	2	44	2	44	y	0.00	0	15	0	15	n	0.00	0	17	0	17	n	0.04	1	24	1	24	n	0.00	0	18	0	18	n	0.00	0	32	0	32	n	ENSMUSG00000020547.6	Bzw2	chr12	protein_coding	basic leucine zipper and W2 domains 2
known_NIR_3923	chr12	3639238	3646649	+	3639238;3641986	3641906;3646649	ES	ENSMUST00000173199.8	known	0.00	0	33.5	0	29;38	n	0.00	0	25.0	0	16;34	n	0.00	0	29.5	0	30;29	n	0.03	1	35.0	1	29;41	n	0.00	0	42.0	0	48;36	n	0.00	0	31.5	0	34;29	n	0.04	2	46.0	2	39;53	y	0.00	0	32.0	0	35;29	n	0.00	0	19.5	0	20;19	n	0.03	1	38.5	1	32;45	n	0.00	0	44.0	0	49;39	n	0.06	3	48.5	3	47;50	y	ENSMUSG00000071454.14	Dtnb	chr12	protein_coding	dystrobrevin, beta
known_NIR_3924	chr12	3646862	3682810	+	3646862;3667691	3667606;3682810	ES	ENSMUST00000173199.8	known	0.00	0	30.0	0	31;29	n	0.00	0	23.5	0	32;15	n	0.00	0	33.0	0	39;27	n	0.00	0	43.0	0	45;41	n	0.00	0	53.5	0	54;53	n	0.08	2	23.0	2	21;25	y	0.00	0	47.0	0	46;48	n	0.00	0	25.5	0	27;24	n	0.00	0	30.5	0	31;30	n	0.00	0	51.5	0	57;46	n	0.00	0	36.0	0	37;35	n	0.00	0	66.0	0	66;66	n	ENSMUSG00000071454.14	Dtnb	chr12	protein_coding	dystrobrevin, beta
known_NIR_3925	chr12	3698389	3768412	+	3698389;3736862	3736738;3768412	ES	ENSMUST00000173199.8	known	0.05	3	60.0	3	42;78	y	0.00	0	56.0	0	45;67	n	0.00	0	54.0	0	38;70	n	0.00	0	71.0	0	39;103	n	0.00	0	65.5	0	45;86	n	0.00	0	31.5	0	27;36	n	0.00	0	51.5	0	48;55	n	0.00	0	37.5	0	29;46	n	0.00	0	51.5	0	36;67	n	0.00	0	84.0	0	61;107	n	0.00	0	61.0	0	51;71	n	0.01	1	88.0	1	66;110	n	ENSMUSG00000071454.14	Dtnb	chr12	protein_coding	dystrobrevin, beta
known_NIR_3926	chr12	3698389	3768412	+	3736862	3768412	5pMXE	ENSMUST00000173074.2	known	0.04	3	78	3	78	y	0.00	0	67	0	67	n	0.00	0	70	0	70	n	0.00	0	103	0	103	n	0.00	0	86	0	86	n	0.00	0	36	0	36	n	0.00	0	55	0	55	n	0.00	0	46	0	46	n	0.00	0	67	0	67	n	0.00	0	107	0	107	n	0.00	0	71	0	71	n	0.01	1	110	1	110	n	ENSMUSG00000071454.14	Dtnb	chr12	protein_coding	dystrobrevin, beta
known_NIR_3927	chr12	3768489	3784939	+	3768489;3782707	3782618;3784939	ES	ENSMUST00000173199.8	known	0.08	4	45.5	4	44;47	y	0.04	2	48.0	2	49;47	y	0.05	2	38.0	2	39;37	y	0.03	2	56.5	2	62;51	y	0.01	1	72.5	1	73;72	n	0.00	0	36.0	0	37;35	n	0.05	3	54.0	3	51;57	y	0.00	0	25.0	0	28;22	n	0.04	2	49.0	2	55;43	y	0.01	1	77.0	1	81;73	n	0.15	8	46.5	8	46;47	y	0.05	5	88.5	5	100;77	y	ENSMUSG00000071454.14	Dtnb	chr12	protein_coding	dystrobrevin, beta
known_NIR_3928	chr12	3823640	3829619	+	3824610	3829619	5pMXE	ENSMUST00000174414.2	known	0.55	35	29	35	29	y	0.60	50	34	50	34	y	0.61	37	24	37	24	y	0.56	37	29	37	29	y	0.50	27	27	27	27	y	0.50	15	15	15	15	y	0.53	47	41	47	41	y	0.62	24	15	24	15	y	0.45	21	26	21	26	y	0.50	45	45	45	45	y	0.50	44	44	44	44	y	0.47	38	43	38	43	y	ENSMUSG00000071454.14	Dtnb	chr12	protein_coding	dystrobrevin, beta
known_NIR_3929	chr12	3823640;3824610	3824570;3829619	+	3823640	3829619	cassetteExon	ENSMUST00000173199.8	known	0.38	21.0	35	13;29	35	y	0.40	33.0	50	32;34	50	y	0.37	22.0	37	20;24	37	y	0.43	28.0	37	27;29	37	y	0.47	24.0	27	21;27	27	y	0.50	15.0	15	15;15	15	y	0.42	34.5	47	28;41	47	y	0.37	14.0	24	13;15	24	y	0.53	23.5	21	21;26	21	y	0.47	40.5	45	36;45	45	y	0.45	35.5	44	27;44	44	y	0.52	41.5	38	40;43	38	y	ENSMUSG00000071454.14	Dtnb	chr12	protein_coding	dystrobrevin, beta
known_NIR_3930	chr12	3824610	3829619	+	3826109	3829619	A5SS&ES	ENSMUST00000173240.8	known	0.97	29	1	29	1	n	1.00	34	0	34	0	n	1.00	24	0	24	0	n	1.00	29	0	29	0	n	1.00	27	0	27	0	n	0.88	15	2	15	2	y	1.00	41	0	41	0	n	1.00	15	0	15	0	n	1.00	26	0	26	0	n	0.98	45	1	45	1	n	1.00	44	0	44	0	n	0.98	43	1	43	1	n	ENSMUSG00000071454.14	Dtnb	chr12	protein_coding	dystrobrevin, beta
known_NIR_3931	chr12	3941860	3945543	+	3923428	3945543	A5SS	ENSMUST00000020991.15	known	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.05	1	21	1	21	n	0.29	2	5	2	5	n	0.00	0	9	0	9	n	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.11	1	8	1	8	n	0.11	1	8	1	8	n	0.14	2	12	2	12	y	0.29	2	5	2	5	n	0.00	0	9	0	9	n	ENSMUSG00000020661.16	Dnmt3a	chr12	protein_coding	DNA methyltransferase 3A
known_NIR_3932	chr12	3945108	3945543	+	3923428	3945543	A5SS	ENSMUST00000020991.15	known	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.09	2	21	2	21	y	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.10	1	9	1	9	n	ENSMUSG00000020661.16	Dnmt3a	chr12	protein_coding	DNA methyltransferase 3A
known_NIR_3933	chr12	3945421	3945543	+	3923428	3945543	A5SS	ENSMUST00000020991.15	known	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	21	0	21	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.11	1	8	1	8	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.18	2	9	2	9	y	ENSMUSG00000020661.16	Dnmt3a	chr12	protein_coding	DNA methyltransferase 3A
known_NIR_3934	chr12	3946148	3946886	+	3946148;3946685	3946578;3946886	ES	ENSMUST00000020991.15	known	0.00	0	12.0	0	8;16	n	0.00	0	9.5	0	10;9	n	0.00	0	22.0	0	21;23	n	0.00	0	7.0	0	9;5	n	0.00	0	19.5	0	21;18	n	0.00	0	7.0	0	5;9	n	0.00	0	16.0	0	14;18	n	0.18	2	9.0	2	12;6	y	0.00	0	5.5	0	3;8	n	0.00	0	17.0	0	18;16	n	0.00	0	14.5	0	12;17	n	0.00	0	13.0	0	7;19	n	ENSMUSG00000020661.16	Dnmt3a	chr12	protein_coding	DNA methyltransferase 3A
known_NIR_3935	chr12	40086832	40087837	-	40086832	40087262	5pMXE	ENSMUST00000144910.2	known	0.23	14	47	14	47	y	0.30	13	30	13	30	y	0.19	26	112	26	112	y	0.24	14	44	14	44	y	0.36	47	83	47	83	y	0.27	28	75	28	75	y	0.39	42	67	42	67	y	0.24	18	58	18	58	y	0.29	13	32	13	32	y	0.28	24	63	24	63	y	0.38	18	30	18	30	y	0.32	29	61	29	61	y	ENSMUSG00000047446.19	Arl4a	chr12	protein_coding	ADP-ribosylation factor-like 4A
known_NIR_3936	chr12	40428873	40495665	-	40428873;40460952	40460575;40495665	ES	ENSMUST00000069692.10	known	0.71	12	5.0	12	6;4	y	0.72	9	3.5	9	5;2	y	0.93	19	1.5	19	3;0	n	0.90	9	1.0	9	0;2	n	0.87	20	3.0	20	4;2	y	0.83	12	2.5	12	4;1	n	0.80	14	3.5	14	6;1	n	0.89	8	1.0	8	2;0	n	0.92	18	1.5	18	3;0	n	0.81	15	3.5	15	2;5	y	0.89	21	2.5	21	1;4	n	0.87	17	2.5	17	3;2	y	ENSMUSG00000055917.16	Zfp277	chr12	protein_coding	zinc finger protein 277
known_NIR_3937	chr12	40886701	40891236	+	40886701;40888553	40888440;40891236	ES	ENSMUST00000037488.8	known	0.02	1	40.0	1	45;35	n	0.00	0	17.0	0	19;15	n	0.00	0	27.5	0	22;33	n	0.00	0	48.0	0	47;49	n	0.00	0	43.0	0	38;48	n	0.00	0	11.5	0	7;16	n	0.05	2	41.5	2	46;37	y	0.00	0	22.5	0	26;19	n	0.00	0	26.5	0	29;24	n	0.03	1	34.5	1	34;35	n	0.04	1	24.5	1	28;21	n	0.09	3	32.0	3	28;36	y	ENSMUSG00000035954.11	Dock4	chr12	protein_coding	dedicator of cytokinesis 4
known_NIR_3938	chr12	4299747	4299836	-	4299750	4299836	A3SS	ENSMUST00000085814.5	known	0.18	2	9	2	9	y	0.38	5	8	5	8	y	0.13	4	26	4	26	y	0.24	4	13	4	13	y	0.35	6	11	6	11	y	0.25	5	15	5	15	y	0.27	4	11	4	11	y	0.40	8	12	8	12	y	0.36	5	9	5	9	y	0.30	6	14	6	14	y	0.30	3	7	3	7	y	0.24	4	13	4	13	y	ENSMUSG00000020647.11	Ncoa1	chr12	protein_coding	nuclear receptor coactivator 1
known_NIR_3939	chr12	4299750	4303657	-	4299750;4299890	4299836;4303657	ES	ENSMUST00000085814.5	known	0.00	0	11.0	0	9;13	n	0.20	2	8.0	2	8;8	y	0.03	1	28.0	1	26;30	n	0.32	6	12.5	6	13;12	y	0.30	5	11.5	5	11;12	y	0.26	6	17.0	6	15;19	y	0.35	6	11.0	6	11;11	y	0.13	2	13.0	2	12;14	y	0.07	1	13.0	1	9;17	n	0.33	8	16.5	8	14;19	y	0.00	0	12.0	0	7;17	n	0.16	3	15.5	3	13;18	y	ENSMUSG00000020647.11	Ncoa1	chr12	protein_coding	nuclear receptor coactivator 1
known_NIR_3940	chr12	4299750	4303657	-	4299890	4303657	A3SS&ES	ENSMUST00000219373.2	known	0.00	0	13	0	13	n	0.20	2	8	2	8	y	0.03	1	30	1	30	n	0.33	6	12	6	12	y	0.29	5	12	5	12	y	0.24	6	19	6	19	y	0.35	6	11	6	11	y	0.12	2	14	2	14	y	0.06	1	17	1	17	n	0.30	8	19	8	19	y	0.00	0	17	0	17	n	0.14	3	18	3	18	y	ENSMUSG00000020647.11	Ncoa1	chr12	protein_coding	nuclear receptor coactivator 1
known_NIR_3941	chr12	4309309	4313434	-	4309395	4313434	A3SS	ENSMUST00000085814.5	known	0.00	0	19	0	19	n	0.00	0	15	0	15	n	0.06	2	33	2	33	y	0.00	0	16	0	16	n	0.00	0	26	0	26	n	0.00	0	16	0	16	n	0.00	0	26	0	26	n	0.00	0	8	0	8	n	0.00	0	19	0	19	n	0.00	0	19	0	19	n	0.00	0	13	0	13	n	0.00	0	31	0	31	n	ENSMUSG00000020647.11	Ncoa1	chr12	protein_coding	nuclear receptor coactivator 1
known_NIR_3942	chr12	44316084	44330094	+	44316084	44329361	A3SS	ENSMUST00000043082.16	known	0.12	6	46	6	46	y	0.24	14	44	14	44	y	0.13	22	144	22	144	y	0.09	12	126	12	126	y	0.07	10	129	10	129	y	0.08	6	68	6	68	y	0.13	22	149	22	149	y	0.09	8	86	8	86	y	0.11	11	89	11	89	y	0.11	15	125	15	125	y	0.08	7	79	7	79	y	0.12	17	121	17	121	y	ENSMUSG00000036257.16	Pnpla8	chr12	protein_coding	patatin-like phospholipase domain containing 8
known_NIR_3943	chr12	44322134	44329361	+	44316084	44329361	A5SS	ENSMUST00000043082.16	known	0.00	0	46	0	46	n	0.00	0	44	0	44	n	0.00	0	144	0	144	n	0.00	0	126	0	126	n	0.00	0	129	0	129	n	0.00	0	68	0	68	n	0.00	0	149	0	149	n	0.01	1	86	1	86	n	0.01	1	89	1	89	n	0.00	0	125	0	125	n	0.01	1	79	1	79	n	0.02	2	121	2	121	y	ENSMUSG00000036257.16	Pnpla8	chr12	protein_coding	patatin-like phospholipase domain containing 8
known_NIR_3944	chr12	44346074	44354702	+	44346074;44351888	44351694;44354702	ES	ENSMUST00000122902.8	known	0.00	0	243.5	0	259;228	n	0.01	3	203.0	3	166;240	y	0.01	4	385.0	4	404;366	y	0.00	0	300.0	0	276;324	n	0.02	6	385.5	6	382;389	y	0.01	2	241.5	2	251;232	y	0.00	0	402.0	0	410;394	n	0.00	0	204.0	0	209;199	n	0.00	1	245.0	1	248;242	n	0.01	4	384.5	4	365;404	y	0.02	5	281.0	5	262;300	y	0.00	0	322.5	0	308;337	n	ENSMUSG00000036257.16	Pnpla8	chr12	protein_coding	patatin-like phospholipase domain containing 8
known_NIR_3945	chr12	44354930	44358108	+	44354897	44358108	A5SS	ENSMUST00000122902.8	known	0.07	20	276	20	276	y	0.02	7	276	7	276	y	0.05	24	453	24	453	y	0.07	24	306	24	306	y	0.06	31	452	31	452	y	0.07	17	230	17	230	y	0.07	35	446	35	446	y	0.04	10	230	10	230	y	0.06	17	256	17	256	y	0.06	29	462	29	462	y	0.05	17	330	17	330	y	0.04	18	414	18	414	y	ENSMUSG00000036257.16	Pnpla8	chr12	protein_coding	patatin-like phospholipase domain containing 8
known_NIR_3946	chr12	45062279	45066250	-	44949773	45066250	A3SS	ENSMUST00000053768.14	known	0.00	0	35	0	35	n	0.00	0	22	0	22	n	0.10	2	18	2	18	y	0.00	0	36	0	36	n	0.00	0	46	0	46	n	0.00	0	11	0	11	n	0.00	0	28	0	28	n	0.00	0	18	0	18	n	0.05	1	21	1	21	n	0.00	0	41	0	41	n	0.00	0	21	0	21	n	0.03	1	36	1	36	n	ENSMUSG00000046314.17	Stxbp6	chr12	protein_coding	syntaxin binding protein 6 (amisyn)
known_NIR_3947	chr12	45066438	45120721	-	45066438	45120978	A5SS	ENSMUST00000053768.14	known	0.00	0	23	0	23	n	0.00	0	15	0	15	n	0.05	1	20	1	20	n	0.05	2	40	2	40	y	0.00	0	34	0	34	n	0.05	1	18	1	18	n	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.00	0	29	0	29	n	0.00	0	18	0	18	n	0.00	0	26	0	26	n	ENSMUSG00000046314.17	Stxbp6	chr12	protein_coding	syntaxin binding protein 6 (amisyn)
known_NIR_3948	chr12	4689794	4699983	+	4689794	4690913	3pMXE	ENSMUST00000217981.2	known	1.00	21	0	21	0	n	1.00	14	0	14	0	n	1.00	58	0	58	0	n	1.00	18	0	18	0	n	1.00	44	0	44	0	n	1.00	19	0	19	0	n	0.92	23	2	23	2	y	1.00	27	0	27	0	n	1.00	18	0	18	0	n	1.00	17	0	17	0	n	1.00	24	0	24	0	n	1.00	33	0	33	0	n	ENSMUSG00000020640.11	Itsn2	chr12	protein_coding	intersectin 2
known_NIR_3949	chr12	4689794;4690993	4690913;4699983	+	4689794	4699983	cassetteExon	ENSMUST00000062580.8	known	0.00	0.0	21	0;0	21	n	0.00	0.0	14	0;0	14	n	0.00	0.0	58	0;0	58	n	0.00	0.0	18	0;0	18	n	0.00	0.0	44	0;0	44	n	0.00	0.0	19	0;0	19	n	0.08	2.0	23	2;2	23	y	0.00	0.0	27	0;0	27	n	0.00	0.0	18	0;0	18	n	0.00	0.0	17	0;0	17	n	0.00	0.0	24	0;0	24	n	0.00	0.0	33	0;0	33	n	ENSMUSG00000020640.11	Itsn2	chr12	protein_coding	intersectin 2
known_NIR_3950	chr12	4723607	4726211	+	4723607	4747142	A3SS	ENSMUST00000062580.8	known	0.35	9	17	9	17	y	0.48	10	11	10	11	y	0.66	50	26	50	26	y	0.68	32	15	32	15	y	0.65	28	15	28	15	y	0.58	14	10	14	10	y	0.41	16	23	16	23	y	0.44	15	19	15	19	y	0.38	13	21	13	21	y	0.60	27	18	27	18	y	0.44	16	20	16	20	y	0.72	31	12	31	12	y	ENSMUSG00000020640.11	Itsn2	chr12	protein_coding	intersectin 2
known_NIR_3951	chr12	4876896	4877023	+	4876896	4877014	A3SS	ENSMUST00000046207.9	known	0.00	0	284	0	284	n	0.01	3	267	3	267	y	0.00	0	248	0	248	n	0.00	0	244	0	244	n	0.01	2	279	2	279	y	0.01	2	144	2	144	y	0.00	0	288	0	288	n	0.00	0	125	0	125	n	0.00	0	206	0	206	n	0.00	0	288	0	288	n	0.00	0	277	0	277	n	0.01	3	230	3	230	y	ENSMUSG00000037361.9	Sf3b6	chr12	protein_coding	splicing factor 3B, subunit 6
known_NIR_3952	chr12	4893451	4900127	+	4893451	4898863	3pMXE	ENSMUST00000219069.2	known	0.80	8	2	8	2	y	0.56	9	7	9	7	y	0.24	5	16	5	16	y	0.62	10	6	10	6	y	0.52	14	13	14	13	y	0.54	7	6	7	6	y	0.45	9	11	9	11	y	0.71	5	2	5	2	n	0.30	3	7	3	7	y	0.50	11	11	11	11	y	0.20	2	8	2	8	y	0.50	7	7	7	7	y	ENSMUSG00000051721.7	Wdcp	chr12	protein_coding	WD repeat and coiled coil containing
known_NIR_3953	chr12	4893451;4899113	4898863;4900127	+	4893451	4900127	cassetteExon	ENSMUST00000220215.2	known	0.16	1.5	8	2;1	8	n	0.28	3.5	9	7;0	9	n	0.62	8.0	5	16;0	5	n	0.23	3.0	10	6;0	10	n	0.32	6.5	14	13;0	14	n	0.30	3.0	7	6;0	7	n	0.40	6.0	9	11;1	9	n	0.41	3.5	5	2;5	5	y	0.54	3.5	3	7;0	3	n	0.35	6.0	11	11;1	11	n	0.67	4.0	2	8;0	2	n	0.33	3.5	7	7;0	7	n	ENSMUSG00000051721.7	Wdcp	chr12	protein_coding	WD repeat and coiled coil containing
known_NIR_3954	chr12	4905392	4907807	+	4905392	4906846	3pMXE	ENSMUST00000220215.2	known	0.71	5	2	5	2	n	0.57	4	3	4	3	n	0.75	9	3	9	3	y	0.80	8	2	8	2	y	0.78	18	5	18	5	y	0.44	4	5	4	5	n	0.75	9	3	9	3	y	0.82	9	2	9	2	y	0.62	8	5	8	5	y	0.50	6	6	6	6	y	0.31	5	11	5	11	y	0.47	7	8	7	8	y	ENSMUSG00000051721.7	Wdcp	chr12	protein_coding	WD repeat and coiled coil containing
known_NIR_3955	chr12	4935858	4944538	-	4935858;4941421	4941315;4944538	ES	ENSMUST00000020962.12	known	0.09	4	38.5	4	37;40	y	0.07	3	38.0	3	47;29	y	0.12	11	82.0	11	93;71	y	0.19	14	60.0	14	66;54	y	0.12	11	84.5	11	85;84	y	0.08	4	48.0	4	51;45	y	0.07	6	74.0	6	77;71	y	0.06	3	50.5	3	47;54	y	0.15	7	39.5	7	40;39	y	0.09	7	70.0	7	77;63	y	0.14	7	41.5	7	45;38	y	0.15	10	58.0	10	64;52	y	ENSMUSG00000020634.13	Ubxn2a	chr12	protein_coding	UBX domain protein 2A
known_NIR_3956	chr12	4952272	4957141	-	4952272	4957349	A5SS	ENSMUST00000020962.12	known	0.00	0	36	0	36	n	0.00	0	23	0	23	n	0.02	1	63	1	63	n	0.04	2	46	2	46	y	0.00	0	63	0	63	n	0.07	3	39	3	39	y	0.09	4	41	4	41	y	0.00	0	31	0	31	n	0.00	0	22	0	22	n	0.00	0	43	0	43	n	0.09	3	32	3	32	y	0.06	2	32	2	32	y	ENSMUSG00000020634.13	Ubxn2a	chr12	protein_coding	UBX domain protein 2A
known_NIR_3957	chr12	51430958	51433850	+	51430958	51433833	A3SS	ENSMUST00000219434.2	known	0.00	0	66	0	66	n	0.00	0	49	0	49	n	0.00	0	104	0	104	n	0.00	0	101	0	101	n	0.04	4	91	4	91	y	0.00	0	59	0	59	n	0.02	1	57	1	57	n	0.00	0	68	0	68	n	0.00	0	50	0	50	n	0.00	0	60	0	60	n	0.00	0	67	0	67	n	0.00	0	89	0	89	n	ENSMUSG00000020952.11	Scfd1	chr12	protein_coding	Sec1 family domain containing 1
known_NIR_3958	chr12	51461706	51462298	+	51461706	51462406	A3SS	ENSMUST00000219434.2	known	1.00	79	0	79	0	n	1.00	95	0	95	0	n	0.94	152	9	152	9	y	0.99	96	1	96	1	n	0.99	145	1	145	1	n	0.99	75	1	75	1	n	0.97	92	3	92	3	y	0.99	78	1	78	1	n	0.97	67	2	67	2	y	1.00	110	0	110	0	n	0.97	88	3	88	3	y	1.00	105	0	105	0	n	ENSMUSG00000020952.11	Scfd1	chr12	protein_coding	Sec1 family domain containing 1
known_NIR_3959	chr12	51676290	51680362	-	51676290	51694777	A5SS	ENSMUST00000169503.4	known	0.06	2	30	2	30	y	0.21	4	15	4	15	y	0.19	8	34	8	34	y	0.11	4	31	4	31	y	0.20	11	45	11	45	y	0.04	1	26	1	26	n	0.09	4	42	4	42	y	0.17	5	24	5	24	y	0.00	0	19	0	19	n	0.15	6	35	6	35	y	0.00	0	27	0	27	n	0.15	6	33	6	33	y	ENSMUSG00000020954.17	Strn3	chr12	protein_coding	striatin, calmodulin binding protein 3
known_NIR_3960	chr12	51689997	51694777	-	51676290	51694777	A3SS	ENSMUST00000169503.4	known	0.00	0	30	0	30	n	0.00	0	15	0	15	n	0.15	6	34	6	34	y	0.11	4	31	4	31	y	0.08	4	45	4	45	y	0.00	0	26	0	26	n	0.07	3	42	3	42	y	0.00	0	24	0	24	n	0.00	0	19	0	19	n	0.10	4	35	4	35	y	0.00	0	27	0	27	n	0.00	0	33	0	33	n	ENSMUSG00000020954.17	Strn3	chr12	protein_coding	striatin, calmodulin binding protein 3
known_NIR_3961	chr12	52566750	52589272	+	52550831	52589272	A5SS	ENSMUST00000218755.2	known	0.98	52	1	52	1	n	0.96	49	2	49	2	y	1.00	102	0	102	0	n	0.92	65	6	65	6	y	0.98	130	2	130	2	y	1.00	66	0	66	0	n	0.98	92	2	92	2	y	0.99	83	1	83	1	n	0.96	44	2	44	2	y	1.00	74	0	74	0	n	0.95	41	2	41	2	y	0.98	90	2	90	2	y	ENSMUSG00000035133.10	Arhgap5	chr12	protein_coding	Rho GTPase activating protein 5
known_NIR_3962	chr12	54693320	54697352	-	54693320	54703157	A5SS	ENSMUST00000056228.8	known	0.01	2	136	2	136	y	0.00	0	121	0	121	n	0.03	8	259	8	259	y	0.01	2	169	2	169	y	0.01	3	275	3	275	y	0.02	4	180	4	180	y	0.01	3	205	3	205	y	0.01	2	132	2	132	y	0.01	2	152	2	152	y	0.02	5	242	5	242	y	0.04	5	117	5	117	y	0.04	11	256	11	256	y	ENSMUSG00000044408.8	Sptssa	chr12	protein_coding	serine palmitoyltransferase, small subunit A
known_NIR_3963	chr12	54693320	54702924	-	54693320	54697352	A5SS&ES	ENSMUST00000218147.2	known	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.15	2	11	2	11	y	ENSMUSG00000044408.8	Sptssa	chr12	protein_coding	serine palmitoyltransferase, small subunit A
known_NIR_3964	chr12	54693320	54702924	-	54693320	54703157	A5SS	ENSMUST00000056228.8	known	0.00	0	136	0	136	n	0.00	0	121	0	121	n	0.00	0	259	0	259	n	0.00	0	169	0	169	n	0.00	0	275	0	275	n	0.00	0	180	0	180	n	0.00	0	205	0	205	n	0.00	0	132	0	132	n	0.00	0	152	0	152	n	0.00	0	242	0	242	n	0.00	0	117	0	117	n	0.01	2	256	2	256	y	ENSMUSG00000044408.8	Sptssa	chr12	protein_coding	serine palmitoyltransferase, small subunit A
known_NIR_3965	chr12	54720635	54732645	-	54720635;54725408	54725295;54732645	ES	ENSMUST00000161592.8	known	0.00	0	120.5	0	137;104	n	0.05	6	105.5	6	125;86	y	0.01	1	140.5	1	143;138	n	0.00	0	110.5	0	124;97	n	0.02	2	126.0	2	119;133	y	0.01	1	70.0	1	84;56	n	0.00	0	119.5	0	125;114	n	0.00	0	65.5	0	79;52	n	0.00	0	89.0	0	96;82	n	0.01	1	137.0	1	140;134	n	0.00	0	120.5	0	130;111	n	0.00	0	118.5	0	119;118	n	ENSMUSG00000054302.16	Eapp	chr12	protein_coding	E2F-associated phosphoprotein
known_NIR_3966	chr12	54737141	54738785	-	54732756	54738785	A3SS	ENSMUST00000161592.8	known	0.01	1	68	1	68	n	0.00	0	101	0	101	n	0.02	2	115	2	115	y	0.01	1	86	1	86	n	0.01	1	122	1	122	n	0.00	0	36	0	36	n	0.00	0	137	0	137	n	0.02	1	57	1	57	n	0.01	1	67	1	67	n	0.00	0	126	0	126	n	0.00	0	96	0	96	n	0.00	0	105	0	105	n	ENSMUSG00000054302.16	Eapp	chr12	protein_coding	E2F-associated phosphoprotein
known_NIR_3967	chr12	54738868	54739560	-	54738880	54739560	A3SS	ENSMUST00000161592.8	known	0.00	0	62	0	62	n	0.00	0	62	0	62	n	0.00	0	119	0	119	n	0.02	2	90	2	90	y	0.00	0	97	0	97	n	0.00	0	46	0	46	n	0.00	0	92	0	92	n	0.00	0	47	0	47	n	0.05	3	58	3	58	y	0.05	5	98	5	98	y	0.03	3	90	3	90	y	0.03	3	94	3	94	y	ENSMUSG00000054302.16	Eapp	chr12	protein_coding	E2F-associated phosphoprotein
known_NIR_3968	chr12	54814927	54830800	-	54814927	54817504	5pMXE	ENSMUST00000218337.2	known	0.00	0	49	0	49	n	0.00	0	47	0	47	n	0.00	0	86	0	86	n	0.00	0	33	0	33	n	0.00	0	63	0	63	n	0.03	1	29	1	29	n	0.00	0	55	0	55	n	0.05	2	37	2	37	y	0.00	0	32	0	32	n	0.00	0	63	0	63	n	0.00	0	43	0	43	n	0.02	1	55	1	55	n	ENSMUSG00000005656.10	Snx6	chr12	protein_coding	sorting nexin 6
known_NIR_3969	chr12	54814927	54830800	-	54830298	54830800	3pMXE	ENSMUST00000219302.2	known	0.00	0	49	0	49	n	0.00	0	29	0	29	n	0.00	0	42	0	42	n	0.00	0	36	0	36	n	0.00	0	56	0	56	n	0.03	1	29	1	29	n	0.00	0	41	0	41	n	0.06	2	34	2	34	y	0.00	0	26	0	26	n	0.00	0	55	0	55	n	0.00	0	29	0	29	n	0.02	1	52	1	52	n	ENSMUSG00000005656.10	Snx6	chr12	protein_coding	sorting nexin 6
known_NIR_3970	chr12	54908198	54908311	-	54908198	54908454	A5SS	ENSMUST00000223450.2	known	0.93	106	8	106	8	y	0.92	99	9	99	9	y	0.95	157	8	157	8	y	0.93	141	10	141	10	y	0.95	167	9	167	9	y	0.95	75	4	75	4	y	0.96	218	10	218	10	y	0.90	95	10	95	10	y	0.93	99	8	99	8	y	0.95	196	10	196	10	y	0.93	113	8	113	8	y	0.93	178	14	178	14	y	ENSMUSG00000062929.9	Cfl2	chr12	protein_coding	cofilin 2, muscle
known_NIR_3971	chr12	54908198	54908565	-	54908198	54908311	A5SS	ENSMUST00000078124.8	known	0.13	16	106	16	106	y	0.12	14	99	14	99	y	0.07	11	157	11	157	y	0.16	27	141	27	141	y	0.10	19	167	19	167	y	0.07	6	75	6	75	y	0.11	26	218	26	218	y	0.06	6	95	6	95	y	0.13	15	99	15	99	y	0.07	15	196	15	196	y	0.11	14	113	14	113	y	0.11	22	178	22	178	y	ENSMUSG00000062929.9	Cfl2	chr12	protein_coding	cofilin 2, muscle
known_NIR_3972	chr12	54908198	54908565	-	54908198	54908454	A5SS	ENSMUST00000223450.2	known	0.67	16	8	16	8	y	0.61	14	9	14	9	y	0.58	11	8	11	8	y	0.73	27	10	27	10	y	0.68	19	9	19	9	y	0.60	6	4	6	4	y	0.72	26	10	26	10	y	0.38	6	10	6	10	y	0.65	15	8	15	8	y	0.60	15	10	15	10	y	0.64	14	8	14	8	y	0.61	22	14	22	14	y	ENSMUSG00000062929.9	Cfl2	chr12	protein_coding	cofilin 2, muscle
known_NIR_3973	chr12	54908618	54909196	-	54908618	54909529	A5SS	ENSMUST00000223450.2	known	0.04	3	65	3	65	y	0.05	4	72	4	72	y	0.03	4	111	4	111	y	0.02	3	126	3	126	y	0.01	1	111	1	111	n	0.02	1	56	1	56	n	0.04	7	166	7	166	y	0.03	2	60	2	60	y	0.03	2	78	2	78	y	0.04	5	109	5	109	y	0.00	0	80	0	80	n	0.03	3	100	3	100	y	ENSMUSG00000062929.9	Cfl2	chr12	protein_coding	cofilin 2, muscle
known_NIR_3974	chr12	54974409	54976312	-	54974495	54976312	A3SS	ENSMUST00000173433.8	known	0.14	1	6	1	6	n	0.67	2	1	2	1	n	0.11	2	16	2	16	y	0.00	0	7	0	7	n	0.07	1	13	1	13	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.33	2	4	2	4	n	0.00	0	12	0	12	n	0.33	1	2	1	2	n	0.00	0	11	0	11	n	ENSMUSG00000035021.14	Baz1a	chr12	protein_coding	bromodomain adjacent to zinc finger domain 1A
known_NIR_3975	chr12	55104137	55106160	-	55104137	55106242	A5SS	ENSMUST00000021406.6	known	0.31	8	18	8	18	y	0.38	9	15	9	15	y	0.39	13	20	13	20	y	0.44	11	14	11	14	y	0.43	13	17	13	17	y	0.48	10	11	10	11	y	0.47	8	9	8	9	y	0.35	6	11	6	11	y	0.21	3	11	3	11	y	0.20	4	16	4	16	y	0.39	7	11	7	11	y	0.50	7	7	7	7	y	ENSMUSG00000062198.6	2700097O09Rik	chr12	protein_coding	RIKEN cDNA 2700097O09 gene
known_NIR_3976	chr12	55339499	55340567	-	55339359	55340567	A3SS	ENSMUST00000021410.10	known	0.06	2	31	2	31	y	0.00	0	26	0	26	n	0.04	2	55	2	55	y	0.00	0	31	0	31	n	0.05	2	38	2	38	y	0.00	0	22	0	22	n	0.00	0	32	0	32	n	0.00	0	31	0	31	n	0.08	3	33	3	33	y	0.07	2	26	2	26	y	0.00	0	19	0	19	n	0.00	0	56	0	56	n	ENSMUSG00000021022.10	Ppp2r3c	chr12	protein_coding	protein phosphatase 2, regulatory subunit B'', gamma
known_NIR_3977	chr12	55340664	55345196	-	55340664;55344675	55344563;55345196	ES	ENSMUST00000021410.10	known	0.00	0	32.0	0	30;34	n	0.00	0	29.5	0	37;22	n	0.00	0	55.0	0	53;57	n	0.00	0	39.5	0	42;37	n	0.00	0	42.0	0	40;44	n	0.04	1	26.5	1	27;26	n	0.00	0	43.0	0	36;50	n	0.00	0	22.0	0	21;23	n	0.00	0	31.0	0	32;30	n	0.00	0	35.5	0	44;27	n	0.00	0	36.0	0	33;39	n	0.03	2	56.0	2	66;46	y	ENSMUSG00000021022.10	Ppp2r3c	chr12	protein_coding	protein phosphatase 2, regulatory subunit B'', gamma
known_NIR_3978	chr12	55651053	55659419	-	55651053	55658858	A5SS	ENSMUST00000219516.2	known	0.46	6	7	6	7	y	0.33	2	4	2	4	n	0.50	8	8	8	8	y	0.00	0	5	0	5	n	0.30	3	7	3	7	y	0.43	3	4	3	4	n	0.40	4	6	4	6	y	0.57	8	6	8	6	y	0.00	0	2	0	2	n	0.40	2	3	2	3	n	0.29	2	5	2	5	n	0.33	6	12	6	12	y	ENSMUSG00000021027.18	Ralgapa1	chr12	protein_coding	Ral GTPase activating protein, alpha subunit 1
known_NIR_3979	chr12	55651053	55659419	-	55658888	55659419	A3SS&ES	ENSMUST00000110687.8	known	0.50	6	6	6	6	y	0.29	2	5	2	5	n	0.50	8	8	8	8	y	0.00	0	6	0	6	n	0.27	3	8	3	8	y	0.33	3	6	3	6	n	0.36	4	7	4	7	y	0.67	8	4	8	4	y	0.00	0	4	0	4	n	0.33	2	4	2	4	n	0.29	2	5	2	5	n	0.40	6	9	6	9	y	ENSMUSG00000021027.18	Ralgapa1	chr12	protein_coding	Ral GTPase activating protein, alpha subunit 1
known_NIR_3980	chr12	55651053;55658888	55658858;55659419	-	55651053	55659419	cassetteExon	ENSMUST00000226244.2	known	0.52	6.5	6	7;6	6	y	0.69	4.5	2	4;5	2	y	0.50	8.0	8	8;8	8	y	1.00	5.5	0	5;6	0	n	0.71	7.5	3	7;8	3	y	0.62	5.0	3	4;6	3	y	0.62	6.5	4	6;7	4	y	0.38	5.0	8	6;4	8	y	1.00	3.0	0	2;4	0	n	0.64	3.5	2	3;4	2	n	0.71	5.0	2	5;5	2	y	0.64	10.5	6	12;9	6	y	ENSMUSG00000021027.18	Ralgapa1	chr12	protein_coding	Ral GTPase activating protein, alpha subunit 1
known_NIR_3981	chr12	55766493	55769559	-	55766493	55768191	A5SS	ENSMUST00000226244.2	known	-	-	-	-	-	-	1.00	1	0	1	0	n	0.64	9	5	9	5	y	0.67	4	2	4	2	n	0.71	5	2	5	2	n	0.50	4	4	4	4	n	0.36	4	7	4	7	y	1.00	2	0	2	0	n	1.00	3	0	3	0	n	0.80	4	1	4	1	n	-	-	-	-	-	-	0.88	7	1	7	1	n	ENSMUSG00000021027.18	Ralgapa1	chr12	protein_coding	Ral GTPase activating protein, alpha subunit 1
known_NIR_3982	chr12	55883430	55885627	+	55883430	55888356	A3SS	ENSMUST00000059250.8	known	0.00	0	6	0	6	n	0.33	2	4	2	4	n	0.06	1	15	1	15	n	0.00	0	12	0	12	n	0.07	1	13	1	13	n	0.17	1	5	1	5	n	0.25	4	12	4	12	y	0.14	1	6	1	6	n	0.00	0	7	0	7	n	0.15	2	11	2	11	y	0.08	1	12	1	12	n	0.00	0	11	0	11	n	ENSMUSG00000012076.9	Brms1l	chr12	protein_coding	breast cancer metastasis-suppressor 1-like
known_NIR_3983	chr12	55883430	55886278	+	55883430	55888356	A3SS	ENSMUST00000059250.8	known	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	15	0	15	n	0.08	1	12	1	12	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.25	2	6	2	6	n	0.00	0	7	0	7	n	0.15	2	11	2	11	y	0.00	0	12	0	12	n	0.00	0	11	0	11	n	ENSMUSG00000012076.9	Brms1l	chr12	protein_coding	breast cancer metastasis-suppressor 1-like
known_NIR_3984	chr12	55892148	55907873	+	55892148;55906972	55906876;55907873	ES	ENSMUST00000059250.8	known	0.00	0	7.0	0	6;8	n	0.00	0	8.0	0	7;9	n	0.00	0	8.0	0	12;4	n	0.00	0	7.0	0	7;7	n	0.21	3	11.5	3	14;9	y	0.00	0	3.5	0	1;6	n	0.09	1	10.5	1	12;9	n	0.00	0	9.0	0	8;10	n	0.00	0	7.0	0	4;10	n	0.00	0	8.0	0	5;11	n	0.00	0	4.0	0	7;1	n	0.00	0	6.5	0	7;6	n	ENSMUSG00000012076.9	Brms1l	chr12	protein_coding	breast cancer metastasis-suppressor 1-like
known_NIR_3985	chr12	55908239	55912736	+	55908239;55909958	55909919;55912736	ES	ENSMUST00000059250.8	known	0.32	3	6.5	3	5;8	y	0.00	0	1.5	0	0;3	n	0.00	0	7.5	0	6;9	n	0.00	0	10.0	0	10;10	n	0.14	2	12.5	2	9;16	y	0.00	0	4.0	0	4;4	n	0.00	0	9.0	0	7;11	n	0.00	0	6.5	0	7;6	n	0.00	0	6.0	0	8;4	n	0.00	0	3.5	0	3;4	n	0.00	0	12.0	0	11;13	n	0.09	1	10.5	1	9;12	n	ENSMUSG00000012076.9	Brms1l	chr12	protein_coding	breast cancer metastasis-suppressor 1-like
known_NIR_3986	chr12	57277397	57350131	+	57277397	57285149	3pMXE	ENSMUST00000139049.2	known	0.21	8	30	8	30	y	0.14	3	18	3	18	y	0.08	3	36	3	36	y	0.18	8	37	8	37	y	0.14	5	32	5	32	y	0.06	2	33	2	33	y	0.17	5	24	5	24	y	0.04	1	24	1	24	n	0.14	3	19	3	19	y	0.06	2	33	2	33	y	0.16	5	26	5	26	y	0.13	6	41	6	41	y	ENSMUSG00000079104.5	Prps1l3	chr12	protein_coding	phosphoribosyl pyrophosphate synthetase 1-like 3
known_NIR_3987	chr12	59060840;59062994	59062861;59063652	+	59060840	59063652	cassetteExon	ENSMUST00000021379.8	known	0.00	0.0	43	0;0	43	n	0.03	1.5	56	3;0	56	n	0.02	1.5	59	2;1	59	n	0.01	0.5	52	1;0	52	n	0.01	0.5	67	1;0	67	n	0.00	0.0	27	0;0	27	n	0.03	2.0	63	2;2	63	y	0.00	0.0	35	0;0	35	n	0.02	1.0	45	2;0	45	n	0.01	0.5	81	0;1	81	n	0.01	0.5	54	1;0	54	n	0.00	0.0	66	0;0	66	n	ENSMUSG00000060121.16	Gemin2	chr12	protein_coding	gem nuclear organelle associated protein 2
known_NIR_3988	chr12	59093985	59094909	-	59091132	59094909	A3SS	ENSMUST00000021380.10	known	0.00	0	143	0	143	n	0.00	0	142	0	142	n	0.00	0	208	0	208	n	0.02	3	156	3	156	y	0.00	0	185	0	185	n	0.00	0	108	0	108	n	0.01	1	180	1	180	n	0.00	0	108	0	108	n	0.00	0	111	0	111	n	0.00	0	221	0	221	n	0.00	0	145	0	145	n	0.00	0	168	0	168	n	ENSMUSG00000020993.10	Trappc6b	chr12	protein_coding	trafficking protein particle complex 6B
known_NIR_3989	chr12	59094992	59097054	-	59094992	59107942	A5SS	ENSMUST00000218686.2	known	0.95	134	7	134	7	y	0.97	121	4	121	4	y	0.98	160	3	160	3	y	0.94	133	8	133	8	y	0.95	169	9	169	9	y	0.94	98	6	98	6	y	0.94	167	10	167	10	y	0.99	101	1	101	1	n	0.97	110	3	110	3	y	0.97	194	7	194	7	y	0.95	124	6	124	6	y	0.98	167	4	167	4	y	ENSMUSG00000020993.10	Trappc6b	chr12	protein_coding	trafficking protein particle complex 6B
known_NIR_3990	chr12	59097184	59098427	-	59097171	59098427	A3SS	ENSMUST00000021380.10	known	0.00	0	115	0	115	n	0.00	0	95	0	95	n	0.01	2	140	2	140	y	0.00	0	99	0	99	n	0.00	0	140	0	140	n	0.02	2	87	2	87	y	0.00	0	122	0	122	n	0.00	0	62	0	62	n	0.00	0	96	0	96	n	0.01	2	156	2	156	y	0.00	0	110	0	110	n	0.02	2	129	2	129	y	ENSMUSG00000020993.10	Trappc6b	chr12	protein_coding	trafficking protein particle complex 6B
known_NIR_3991	chr12	59098494	59107942	-	59094992	59107942	A3SS	ENSMUST00000218686.2	known	0.93	89	7	89	7	y	0.96	86	4	86	4	y	0.98	140	3	140	3	y	0.91	83	8	83	8	y	0.93	126	9	126	9	y	0.90	55	6	55	6	y	0.90	95	10	95	10	y	0.98	59	1	59	1	n	0.96	72	3	72	3	y	0.95	128	7	128	7	y	0.93	83	6	83	6	y	0.97	136	4	136	4	y	ENSMUSG00000020993.10	Trappc6b	chr12	protein_coding	trafficking protein particle complex 6B
known_NIR_3992	chr12	59098494;59106297	59106042;59107942	-	59098494	59107942	cassetteExon	ENSMUST00000021380.10	known	0.02	2.0	89	3;1	89	n	0.04	4.0	86	1;7	86	n	0.03	5.0	140	5;5	140	y	0.03	3.0	83	0;6	83	n	0.00	0.0	126	0;0	126	n	0.02	1.0	55	1;1	55	n	0.02	1.5	95	0;3	95	n	0.06	3.5	59	4;3	59	y	0.02	1.5	72	2;1	72	n	0.04	6.0	128	5;7	128	y	0.02	2.0	83	1;3	83	n	0.03	4.5	136	6;3	136	y	ENSMUSG00000020993.10	Trappc6b	chr12	protein_coding	trafficking protein particle complex 6B
known_NIR_3993	chr12	59106297	59107942	-	59094992	59107942	A3SS	ENSMUST00000218686.2	known	0.12	1	7	1	7	n	0.64	7	4	7	4	y	0.62	5	3	5	3	n	0.43	6	8	6	8	y	0.00	0	9	0	9	n	0.14	1	6	1	6	n	0.23	3	10	3	10	y	0.75	3	1	3	1	n	0.25	1	3	1	3	n	0.50	7	7	7	7	y	0.33	3	6	3	6	n	0.43	3	4	3	4	n	ENSMUSG00000020993.10	Trappc6b	chr12	protein_coding	trafficking protein particle complex 6B
known_NIR_3994	chr12	59176682	59182850	+	59166593	59182850	A5SS	ENSMUST00000219140.3	known	0.15	22	121	22	121	y	0.18	21	94	21	94	y	0.05	11	207	11	207	y	0.12	32	238	32	238	y	0.20	56	225	56	225	y	0.11	12	101	12	101	y	0.25	59	179	59	179	y	0.19	32	136	32	136	y	0.16	23	122	23	122	y	0.23	78	254	78	254	y	0.17	30	143	30	143	y	0.19	54	230	54	230	y	ENSMUSG00000021000.18	Mia2	chr12	protein_coding	MIA SH3 domain ER export factor 2
known_NIR_3995	chr12	59177905	59182850	+	59166593	59182850	A5SS	ENSMUST00000219140.3	known	0.28	46	121	46	121	y	0.21	25	94	25	94	y	0.11	26	207	26	207	y	0.22	67	238	67	238	y	0.23	67	225	67	225	y	0.14	17	101	17	101	y	0.24	57	179	57	179	y	0.15	24	136	24	136	y	0.18	26	122	26	122	y	0.21	69	254	69	254	y	0.16	28	143	28	143	y	0.14	37	230	37	230	y	ENSMUSG00000021000.18	Mia2	chr12	protein_coding	MIA SH3 domain ER export factor 2
known_NIR_3996	chr12	59177905	59182850	+	59176682	59182850	A5SS	ENSMUST00000175912.8	known	0.68	46	22	46	22	y	0.54	25	21	25	21	y	0.70	26	11	26	11	y	0.68	67	32	67	32	y	0.54	67	56	67	56	y	0.59	17	12	17	12	y	0.49	57	59	57	59	y	0.43	24	32	24	32	y	0.53	26	23	26	23	y	0.47	69	78	69	78	y	0.48	28	30	28	30	y	0.41	37	54	37	54	y	ENSMUSG00000021000.18	Mia2	chr12	protein_coding	MIA SH3 domain ER export factor 2
known_NIR_3997	chr12	59178390	59182850	+	59166593	59182850	A5SS	ENSMUST00000219140.3	known	0.22	35	121	35	121	y	0.21	25	94	25	94	y	0.28	80	207	80	207	y	0.13	35	238	35	238	y	0.17	47	225	47	225	y	0.26	35	101	35	101	y	0.16	35	179	35	179	y	0.20	34	136	34	136	y	0.14	20	122	20	122	y	0.12	36	254	36	254	y	0.16	27	143	27	143	y	0.15	40	230	40	230	y	ENSMUSG00000021000.18	Mia2	chr12	protein_coding	MIA SH3 domain ER export factor 2
known_NIR_3998	chr12	59178390	59182850	+	59176682	59182850	A5SS	ENSMUST00000175912.8	known	0.61	35	22	35	22	y	0.54	25	21	25	21	y	0.88	80	11	80	11	y	0.52	35	32	35	32	y	0.46	47	56	47	56	y	0.74	35	12	35	12	y	0.37	35	59	35	59	y	0.52	34	32	34	32	y	0.47	20	23	20	23	y	0.32	36	78	36	78	y	0.47	27	30	27	30	y	0.43	40	54	40	54	y	ENSMUSG00000021000.18	Mia2	chr12	protein_coding	MIA SH3 domain ER export factor 2
known_NIR_3999	chr12	59178390	59182850	+	59177905	59182850	A5SS	ENSMUST00000177460.8	known	0.43	35	46	35	46	y	0.50	25	25	25	25	y	0.75	80	26	80	26	y	0.34	35	67	35	67	y	0.41	47	67	47	67	y	0.67	35	17	35	17	y	0.38	35	57	35	57	y	0.59	34	24	34	24	y	0.43	20	26	20	26	y	0.34	36	69	36	69	y	0.49	27	28	27	28	y	0.52	40	37	40	37	y	ENSMUSG00000021000.18	Mia2	chr12	protein_coding	MIA SH3 domain ER export factor 2
known_NIR_4000	chr12	59182981	59184484	+	59182981;59184388	59184367;59184484	ES	ENSMUST00000219140.3	known	0.00	0	318.5	0	307;330	n	0.00	1	237.0	1	226;248	n	0.00	0	425.5	0	425;426	n	0.00	0	500.5	0	494;507	n	0.00	2	468.5	2	462;475	y	0.01	2	225.0	2	214;236	y	0.00	1	431.0	1	417;445	n	0.00	0	260.5	0	257;264	n	0.00	0	308.0	0	284;332	n	0.00	1	539.5	1	524;555	n	0.00	0	359.0	0	350;368	n	0.00	0	455.0	0	427;483	n	ENSMUSG00000021000.18	Mia2	chr12	protein_coding	MIA SH3 domain ER export factor 2
known_NIR_4001	chr12	59184572	59193122	+	59184572	59191485	3pMXE	ENSMUST00000175803.2	known	0.18	66	291	66	291	y	0.19	48	210	48	210	y	0.03	15	443	15	443	y	0.16	82	420	82	420	y	0.18	94	427	94	427	y	0.09	23	231	23	231	y	0.15	73	410	73	410	y	0.11	30	235	30	235	y	0.22	71	257	71	257	y	0.21	121	456	121	456	y	0.22	69	241	69	241	y	0.17	88	419	88	419	y	ENSMUSG00000021000.18	Mia2	chr12	protein_coding	MIA SH3 domain ER export factor 2
known_NIR_4002	chr12	59184572	59193122	+	59184572;59191556	59191485;59193122	ES	ENSMUST00000219140.3	known	0.19	66	276.0	66	291;261	y	0.19	48	207.0	48	210;204	y	0.03	15	435.5	15	443;428	y	0.17	82	401.5	82	420;383	y	0.18	94	428.0	94	427;429	y	0.10	23	216.0	23	231;201	y	0.15	73	402.5	73	410;395	y	0.12	30	222.0	30	235;209	y	0.21	71	269.0	71	257;281	y	0.21	121	446.5	121	456;437	y	0.22	69	243.5	69	241;246	y	0.18	88	400.5	88	419;382	y	ENSMUSG00000021000.18	Mia2	chr12	protein_coding	MIA SH3 domain ER export factor 2
known_NIR_4003	chr12	59184572	59193633	+	59184572	59191485	3pMXE	ENSMUST00000175803.2	known	0.01	4	291	4	291	y	0.01	3	210	3	210	y	0.00	0	443	0	443	n	0.02	10	420	10	420	y	0.02	7	427	7	427	y	0.03	7	231	7	231	y	0.03	11	410	11	410	y	0.00	0	235	0	235	n	0.02	6	257	6	257	y	0.01	4	456	4	456	y	0.02	6	241	6	241	y	0.00	2	419	2	419	y	ENSMUSG00000021000.18	Mia2	chr12	protein_coding	MIA SH3 domain ER export factor 2
known_NIR_4004	chr12	59184572	59193633	+	59184572;59191556	59191485;59193633	ES	ENSMUST00000175912.8	known	0.03	4	145.5	4	291;0	n	0.03	3	105.0	3	210;0	n	0.00	0	224.5	0	443;6	n	0.05	10	211.5	10	420;3	y	0.03	7	215.0	7	427;3	y	0.06	7	117.0	7	231;3	y	0.05	11	205.5	11	410;1	n	0.00	0	120.5	0	235;6	n	0.04	6	128.5	6	257;0	n	0.02	4	229.5	4	456;3	y	0.05	6	121.0	6	241;1	n	0.01	2	210.5	2	419;2	y	ENSMUSG00000021000.18	Mia2	chr12	protein_coding	MIA SH3 domain ER export factor 2
known_NIR_4005	chr12	59184572;59193148	59193122;59193633	+	59184572	59193633	cassetteExon	ENSMUST00000176892.8	known	0.98	187.0	4	66;308	4	y	0.98	160.0	3	48;272	3	y	1.00	235.5	0	15;456	0	n	0.96	257.0	10	82;432	10	y	0.98	284.5	7	94;475	7	y	0.95	128.5	7	23;234	7	y	0.96	272.0	11	73;471	11	y	1.00	134.5	0	30;239	0	n	0.97	208.5	6	71;346	6	y	0.99	353.0	4	121;585	4	y	0.97	194.0	6	69;319	6	y	0.99	267.0	2	88;446	2	y	ENSMUSG00000021000.18	Mia2	chr12	protein_coding	MIA SH3 domain ER export factor 2
known_NIR_4006	chr12	59184572;59193148	59193122;59193633	+	59184572;59191556	59191485;59193633	MXE	ENSMUST00000175912.8	known	0.56	187.0	145.5	66;308	291;0	n	0.60	160.0	105.0	48;272	210;0	n	0.51	235.5	224.5	15;456	443;6	y	0.55	257.0	211.5	82;432	420;3	y	0.57	284.5	215.0	94;475	427;3	y	0.52	128.5	117.0	23;234	231;3	y	0.57	272.0	205.5	73;471	410;1	n	0.53	134.5	120.5	30;239	235;6	y	0.62	208.5	128.5	71;346	257;0	n	0.61	353.0	229.5	121;585	456;3	y	0.62	194.0	121.0	69;319	241;1	n	0.56	267.0	210.5	88;446	419;2	y	ENSMUSG00000021000.18	Mia2	chr12	protein_coding	MIA SH3 domain ER export factor 2
known_NIR_4007	chr12	59191556	59193633	+	59191556;59193148	59193122;59193633	ES	ENSMUST00000219140.3	known	0.00	0	284.5	0	261;308	n	0.00	0	238.0	0	204;272	n	0.01	6	442.0	6	428;456	y	0.01	3	407.5	3	383;432	y	0.01	3	452.0	3	429;475	y	0.01	3	217.5	3	201;234	y	0.00	1	433.0	1	395;471	n	0.03	6	224.0	6	209;239	y	0.00	0	313.5	0	281;346	n	0.01	3	511.0	3	437;585	y	0.00	1	282.5	1	246;319	n	0.00	2	414.0	2	382;446	y	ENSMUSG00000021000.18	Mia2	chr12	protein_coding	MIA SH3 domain ER export factor 2
known_NIR_4008	chr12	59215821	59217048	+	59215821	59217044	A3SS	ENSMUST00000219140.3	known	0.00	0	454	0	454	n	0.00	1	423	1	423	n	0.00	2	496	2	496	y	0.00	0	561	0	561	n	0.00	0	542	0	542	n	0.00	0	244	0	244	n	0.00	0	509	0	509	n	0.00	0	315	0	315	n	0.00	1	441	1	441	n	0.00	1	650	1	650	n	0.00	0	430	0	430	n	0.00	0	538	0	538	n	ENSMUSG00000021000.18	Mia2	chr12	protein_coding	MIA SH3 domain ER export factor 2
known_NIR_4009	chr12	59219378	59223117	+	59219378	59220892	3pMXE	ENSMUST00000175659.8	known	0.00	0	578	0	578	n	0.00	0	504	0	504	n	0.01	3	560	3	560	y	0.01	4	728	4	728	y	0.01	5	677	5	677	y	0.01	2	338	2	338	y	0.00	0	725	0	725	n	0.01	3	361	3	361	y	0.00	0	515	0	515	n	0.01	7	855	7	855	y	0.00	2	539	2	539	y	0.00	3	675	3	675	y	ENSMUSG00000021000.18	Mia2	chr12	protein_coding	MIA SH3 domain ER export factor 2
known_NIR_4010	chr12	59219378	59223117	+	59219378;59220974	59220892;59223117	ES	ENSMUST00000219140.3	known	0.00	0	560.5	0	578;543	n	0.00	0	459.0	0	504;414	n	0.01	3	519.5	3	560;479	y	0.01	4	666.5	4	728;605	y	0.01	5	639.5	5	677;602	y	0.01	2	306.5	2	338;275	y	0.00	0	678.0	0	725;631	n	0.01	3	334.0	3	361;307	y	0.00	0	473.5	0	515;432	n	0.01	7	811.5	7	855;768	y	0.00	2	528.0	2	539;517	y	0.00	3	624.5	3	675;574	y	ENSMUSG00000021000.18	Mia2	chr12	protein_coding	MIA SH3 domain ER export factor 2
known_NIR_4011	chr12	59219378;59223245	59223117;59226636	+	59219378;59220974	59220892;59226636	MXE	ENSMUST00000177225.8	known	0.45	239.0	295.0	0;478	578;12	n	0.44	205.0	257.0	0;410	504;10	n	0.43	216.0	283.0	3;429	560;6	y	0.41	259.5	369.0	4;515	728;10	y	0.44	273.5	344.0	5;542	677;11	y	0.43	128.0	170.5	2;254	338;3	y	0.44	291.0	369.5	0;582	725;14	n	0.41	125.0	182.0	3;247	361;3	y	0.43	194.0	261.5	0;388	515;8	n	0.45	357.0	434.5	7;707	855;14	y	0.45	228.5	276.0	2;455	539;13	y	0.45	285.5	344.0	3;568	675;13	y	ENSMUSG00000021000.18	Mia2	chr12	protein_coding	MIA SH3 domain ER export factor 2
known_NIR_4012	chr12	59220974	59226636	+	59220974	59223117	A3SS&ES	ENSMUST00000176336.8	known	0.02	12	543	12	543	y	0.02	10	414	10	414	y	0.01	6	479	6	479	y	0.02	10	605	10	605	y	0.02	11	602	11	602	y	0.01	3	275	3	275	y	0.02	14	631	14	631	y	0.01	3	307	3	307	y	0.02	8	432	8	432	y	0.02	14	768	14	768	y	0.02	13	517	13	517	y	0.02	13	574	13	574	y	ENSMUSG00000021000.18	Mia2	chr12	protein_coding	MIA SH3 domain ER export factor 2
known_NIR_4013	chr12	59220974	59226636	+	59220974;59223245	59223117;59226636	ES	ENSMUST00000219140.3	known	0.02	12	510.5	12	543;478	y	0.02	10	412.0	10	414;410	y	0.01	6	454.0	6	479;429	y	0.02	10	560.0	10	605;515	y	0.02	11	572.0	11	602;542	y	0.01	3	264.5	3	275;254	y	0.02	14	606.5	14	631;582	y	0.01	3	277.0	3	307;247	y	0.02	8	410.0	8	432;388	y	0.02	14	737.5	14	768;707	y	0.03	13	486.0	13	517;455	y	0.02	13	571.0	13	574;568	y	ENSMUSG00000021000.18	Mia2	chr12	protein_coding	MIA SH3 domain ER export factor 2
known_NIR_4014	chr12	64969542	64970281	+	64969188	64970281	A5SS	ENSMUST00000058135.6	known	0.28	5	13	5	13	y	0.11	1	8	1	8	n	0.29	6	15	6	15	y	0.40	4	6	4	6	y	0.55	6	5	6	5	y	0.25	3	9	3	9	y	0.30	3	7	3	7	y	0.50	1	1	1	1	n	0.00	0	4	0	4	n	0.18	2	9	2	9	y	0.00	0	2	0	2	n	0.18	2	9	2	9	y	ENSMUSG00000047227.6	Gm527	chr12	protein_coding	predicted gene 527
known_NIR_4015	chr12	65014802	65017000	+	65014802	65023469	A3SS	ENSMUST00000066296.9	known	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.14	3	19	3	19	y	0.00	0	23	0	23	n	0.13	2	13	2	13	y	0.21	3	11	3	11	y	0.00	0	15	0	15	n	0.50	3	3	3	3	n	0.12	1	7	1	7	n	0.12	2	15	2	15	y	0.00	0	2	0	2	n	0.00	0	11	0	11	n	ENSMUSG00000035614.12	Togaram1	chr12	protein_coding	TOG array regulator of axonemal microtubules 1
known_NIR_4016	chr12	65033264;65037864	65037715;65039319	+	65033264	65039319	cassetteExon	ENSMUST00000066296.9	known	0.58	7.0	5	5;9	5	y	0.50	7.0	7	11;3	7	y	0.61	17.0	11	15;19	11	y	0.35	8.0	15	8;8	15	y	0.46	9.5	11	10;9	11	y	0.62	5.0	3	7;3	3	y	0.65	7.5	4	13;2	4	y	0.50	7.0	7	10;4	7	y	0.60	7.5	5	7;8	5	y	0.53	10.0	9	6;14	9	y	0.60	4.5	3	3;6	3	y	0.44	5.5	7	8;3	7	y	ENSMUSG00000035614.12	Togaram1	chr12	protein_coding	TOG array regulator of axonemal microtubules 1
known_NIR_4017	chr12	65090131	65090489	+	65090131;65090385	65090317;65090489	ES	ENSMUST00000129956.2	known	0.17	1	5.0	1	6;4	n	0.00	0	2.0	0	4;0	n	0.00	0	8.5	0	12;5	n	0.00	0	3.0	0	2;4	n	0.00	0	13.5	0	12;15	n	0.00	0	4.5	0	5;4	n	0.00	0	3.0	0	4;2	n	0.00	0	1.0	0	0;2	n	0.50	4	4.0	4	3;5	y	0.00	0	5.5	0	8;3	n	0.00	0	3.5	0	5;2	n	0.00	0	6.5	0	9;4	n	ENSMUSG00000035597.20	Prpf39	chr12	protein_coding	pre-mRNA processing factor 39
known_NIR_4018	chr12	65090131	65090780	+	65090651	65090780	A5SS	ENSMUST00000220798.2	known	0.27	3	8	3	8	y	0.50	1	1	1	1	n	0.25	4	12	4	12	y	0.33	8	16	8	16	y	0.29	5	12	5	12	y	0.12	1	7	1	7	n	0.42	5	7	5	7	y	0.36	4	7	4	7	y	0.12	2	15	2	15	y	0.27	7	19	7	19	y	0.50	6	6	6	6	y	0.45	13	16	13	16	y	ENSMUSG00000035597.20	Prpf39	chr12	protein_coding	pre-mRNA processing factor 39
known_NIR_4019	chr12	65090131;65090651	65090317;65090780	+	65090131	65090780	cassetteExon	ENSMUST00000120580.8	known	0.70	7.0	3	6;8	3	y	0.71	2.5	1	4;1	1	n	0.75	12.0	4	12;12	4	y	0.53	9.0	8	2;16	8	y	0.71	12.0	5	12;12	5	y	0.86	6.0	1	5;7	1	n	0.52	5.5	5	4;7	5	y	0.47	3.5	4	0;7	4	n	0.82	9.0	2	3;15	2	y	0.66	13.5	7	8;19	7	y	0.48	5.5	6	5;6	6	y	0.49	12.5	13	9;16	13	y	ENSMUSG00000035597.20	Prpf39	chr12	protein_coding	pre-mRNA processing factor 39
known_NIR_4020	chr12	65090131;65090651	65090489;65090780	+	65090131	65090780	cassetteExon	ENSMUST00000120580.8	known	0.60	4.5	3	1;8	3	n	0.33	0.5	1	0;1	1	n	0.60	6.0	4	0;12	4	n	0.50	8.0	8	0;16	8	n	0.55	6.0	5	0;12	5	n	0.78	3.5	1	0;7	1	n	0.41	3.5	5	0;7	5	n	0.47	3.5	4	0;7	4	n	0.83	9.5	2	4;15	2	y	0.58	9.5	7	0;19	7	n	0.33	3.0	6	0;6	6	n	0.38	8.0	13	0;16	13	n	ENSMUSG00000035597.20	Prpf39	chr12	protein_coding	pre-mRNA processing factor 39
known_NIR_4021	chr12	65102094	65102412	+	65102094	65102208	A3SS&ES	ENSMUST00000220462.2	known	0.86	19	3	19	3	y	0.75	12	4	12	4	y	0.79	26	7	26	7	y	0.80	16	4	16	4	y	0.65	17	9	17	9	y	0.50	5	5	5	5	y	0.67	24	12	24	12	y	0.31	5	11	5	11	y	0.76	16	5	16	5	y	0.79	27	7	27	7	y	0.78	14	4	14	4	y	0.79	22	6	22	6	y	ENSMUSG00000035597.20	Prpf39	chr12	protein_coding	pre-mRNA processing factor 39
known_NIR_4022	chr12	65102094;65102307	65102208;65102412	+	65102094	65102412	cassetteExon	ENSMUST00000120580.8	known	0.12	2.5	19	3;2	19	y	0.23	3.5	12	4;3	12	y	0.21	7.0	26	7;7	26	y	0.26	5.5	16	4;7	16	y	0.31	7.5	17	9;6	17	y	0.52	5.5	5	5;6	5	y	0.30	10.5	24	12;9	24	y	0.60	7.5	5	11;4	5	y	0.16	3.0	16	5;1	16	n	0.11	3.5	27	7;0	27	n	0.22	4.0	14	4;4	14	y	0.24	7.0	22	6;8	22	y	ENSMUSG00000035597.20	Prpf39	chr12	protein_coding	pre-mRNA processing factor 39
known_NIR_4023	chr12	65102538	65103079	+	65102538	65103025	A3SS	ENSMUST00000120580.8	known	0.00	0	19	0	19	n	0.00	0	35	0	35	n	0.00	0	53	0	53	n	0.00	0	41	0	41	n	0.07	3	43	3	43	y	0.00	0	20	0	20	n	0.00	0	39	0	39	n	0.00	0	24	0	24	n	0.00	0	47	0	47	n	0.00	0	59	0	59	n	0.00	0	34	0	34	n	0.06	4	65	4	65	y	ENSMUSG00000035597.20	Prpf39	chr12	protein_coding	pre-mRNA processing factor 39
known_NIR_4024	chr12	65103293	65104506	+	65103293	65104503	A3SS	ENSMUST00000120580.8	known	0.00	0	57	0	57	n	0.00	0	71	0	71	n	0.00	0	72	0	72	n	0.00	0	63	0	63	n	0.06	5	80	5	80	y	0.00	0	34	0	34	n	0.00	0	60	0	60	n	0.00	0	42	0	42	n	0.00	0	58	0	58	n	0.00	0	69	0	69	n	0.00	0	58	0	58	n	0.00	0	85	0	85	n	ENSMUSG00000035597.20	Prpf39	chr12	protein_coding	pre-mRNA processing factor 39
known_NIR_4025	chr12	65160792	65165058	+	65160792;65163238	65163107;65165058	ES	ENSMUST00000058889.5	known	0.25	1	3.0	1	5;1	n	0.00	0	1.5	0	1;2	n	0.18	1	4.5	1	4;5	n	0.00	0	6.0	0	8;4	n	0.00	0	13.0	0	8;18	n	0.00	0	5.5	0	5;6	n	0.17	3	15.0	3	16;14	y	0.00	0	6.0	0	5;7	n	0.00	0	5.5	0	7;4	n	0.25	2	6.0	2	5;7	y	0.22	1	3.5	1	3;4	n	0.33	1	2.0	1	4;0	n	ENSMUSG00000055884.9	Fancm	chr12	protein_coding	Fanconi anemia, complementation group M
known_NIR_4026	chr12	69229939	69230757	-	69229939	69230439	A5SS	ENSMUST00000110620.2	known	0.97	1477	51	1477	51	y	0.96	1605	66	1605	66	y	0.95	1847	102	1847	102	y	0.97	1482	38	1482	38	y	0.95	1990	102	1990	102	y	0.95	1087	55	1087	55	y	0.97	1937	65	1937	65	y	0.95	1119	65	1119	65	y	0.97	1373	45	1373	45	y	0.97	1888	57	1888	57	y	0.96	1500	67	1500	67	y	0.97	1572	54	1572	54	y	ENSMUSG00000049751.7	Rpl36al	chr12	protein_coding	ribosomal protein L36A-like
known_NIR_4027	chr12	69229939	69232628	-	69229939	69230439	5pMXE	ENSMUST00000110620.2	known	0.00	0	51	0	51	n	0.00	0	66	0	66	n	0.00	0	102	0	102	n	0.00	0	38	0	38	n	0.00	0	102	0	102	n	0.00	0	55	0	55	n	0.00	0	65	0	65	n	0.03	2	65	2	65	y	0.00	0	45	0	45	n	0.00	0	57	0	57	n	0.00	0	67	0	67	n	0.00	0	54	0	54	n	ENSMUSG00000049751.7	Rpl36al	chr12	protein_coding	ribosomal protein L36A-like
known_NIR_4028	chr12	69229939	69232628	-	69229939	69230757	5pMXE	ENSMUST00000054544.7	known	0.00	0	1477	0	1477	n	0.00	0	1605	0	1605	n	0.00	0	1847	0	1847	n	0.00	0	1482	0	1482	n	0.00	0	1990	0	1990	n	0.00	0	1087	0	1087	n	0.00	0	1937	0	1937	n	0.00	2	1119	2	1119	y	0.00	0	1373	0	1373	n	0.00	0	1888	0	1888	n	0.00	0	1500	0	1500	n	0.00	0	1572	0	1572	n	ENSMUSG00000049751.7	Rpl36al	chr12	protein_coding	ribosomal protein L36A-like
known_NIR_4029	chr12	69237168	69239582	-	69232685	69239582	A3SS	ENSMUST00000223192.2	known	0.82	14	3	14	3	y	1.00	6	0	6	0	n	1.00	9	0	9	0	n	1.00	15	0	15	0	n	1.00	22	0	22	0	n	1.00	1	0	1	0	n	1.00	9	0	9	0	n	0.75	6	2	6	2	n	1.00	16	0	16	0	n	1.00	15	0	15	0	n	1.00	14	0	14	0	n	1.00	15	0	15	0	n	ENSMUSG00000113149.2	Gm49383	chr12	protein_coding	predicted gene, 49383
known_NIR_4030	chr12	69359415	69361190	-	69359440	69361190	A3SS	ENSMUST00000021368.10	known	0.00	0	54	0	54	n	0.00	0	54	0	54	n	0.00	0	57	0	57	n	0.00	0	49	0	49	n	0.04	2	54	2	54	y	0.00	0	39	0	39	n	0.00	0	54	0	54	n	0.00	0	52	0	52	n	0.03	1	33	1	33	n	0.00	0	66	0	66	n	0.00	0	49	0	49	n	0.00	0	41	0	41	n	ENSMUSG00000020982.10	Nemf	chr12	protein_coding	nuclear export mediator factor
known_NIR_4031	chr12	69387830	69388047	-	69387850	69388047	A3SS	ENSMUST00000021368.10	known	0.20	4	16	4	16	y	0.00	0	13	0	13	n	0.05	3	55	3	55	y	0.21	7	26	7	26	y	0.08	3	36	3	36	y	0.11	3	25	3	25	y	0.17	4	20	4	20	y	0.04	1	24	1	24	n	0.07	2	25	2	25	y	0.00	0	24	0	24	n	0.10	2	19	2	19	y	0.30	13	30	13	30	y	ENSMUSG00000020982.10	Nemf	chr12	protein_coding	nuclear export mediator factor
known_NIR_4032	chr12	69400666	69401421	-	69400716	69401421	A3SS	ENSMUST00000021368.10	known	0.11	1	8	1	8	n	0.00	0	10	0	10	n	0.00	0	22	0	22	n	0.00	0	18	0	18	n	0.00	0	23	0	23	n	0.00	0	28	0	28	n	0.07	2	25	2	25	y	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	ENSMUSG00000020982.10	Nemf	chr12	protein_coding	nuclear export mediator factor
known_NIR_4033	chr12	69624714	69626608	-	69624714	69626680	A5SS	ENSMUST00000058639.11	known	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.33	1	2	1	2	n	0.11	2	16	2	16	y	0.00	0	2	0	2	n	0.33	4	8	4	8	y	0.00	0	5	0	5	n	0.12	1	7	1	7	n	0.11	1	8	1	8	n	0.17	1	5	1	5	n	0.00	0	16	0	16	n	ENSMUSG00000049882.11	Vcpkmt	chr12	protein_coding	valosin containing protein lysine (K) methyltransferase
known_NIR_4034	chr12	69629119	69629305	-	69629119	69629294	A5SS	ENSMUST00000058639.11	known	0.00	0	6	0	6	n	0.61	11	7	11	7	y	0.00	0	12	0	12	n	0.38	3	5	3	5	n	0.50	4	4	4	4	n	0.12	1	7	1	7	n	0.38	5	8	5	8	y	0.20	1	4	1	4	n	0.50	2	2	2	2	n	0.50	5	5	5	5	y	0.62	5	3	5	3	n	0.75	6	2	6	2	n	ENSMUSG00000049882.11	Vcpkmt	chr12	protein_coding	valosin containing protein lysine (K) methyltransferase
known_NIR_4035	chr12	69664957	69673991	-	69664954	69673991	A3SS	ENSMUST00000035773.14	known	1.00	6	0	6	0	n	1.00	5	0	5	0	n	0.88	15	2	15	2	y	0.67	6	3	6	3	n	1.00	10	0	10	0	n	1.00	10	0	10	0	n	0.73	8	3	8	3	y	0.62	5	3	5	3	n	1.00	9	0	9	0	n	1.00	14	0	14	0	n	1.00	4	0	4	0	n	1.00	7	0	7	0	n	ENSMUSG00000034801.14	Sos2	chr12	protein_coding	SOS Ras/Rho guanine nucleotide exchange factor 2
known_NIR_4036	chr12	69768984	69771428	-	69768967	69771428	A3SS	ENSMUST00000021370.10	known	0.05	2	37	2	37	y	0.00	0	14	0	14	n	0.00	0	51	0	51	n	0.00	0	68	0	68	n	0.02	2	80	2	80	y	0.10	3	26	3	26	y	0.00	0	47	0	47	n	0.00	0	31	0	31	n	0.00	0	46	0	46	n	0.03	3	112	3	112	y	0.10	6	55	6	55	y	0.00	0	96	0	96	n	ENSMUSG00000020988.10	L2hgdh	chr12	protein_coding	L-2-hydroxyglutarate dehydrogenase
known_NIR_4037	chr12	69771788	69784725	+	69771788;69772328	69772229;69784725	ES	ENSMUST00000220916.2	known	0.67	5	2.5	5	2;3	y	0.45	5	6.0	5	0;12	n	0.68	19	9.0	19	0;18	n	0.38	4	6.5	4	3;10	y	0.55	9	7.5	9	2;13	y	0.64	8	4.5	8	0;9	n	0.61	10	6.5	10	2;11	y	0.64	9	5.0	9	4;6	y	0.57	6	4.5	6	1;8	n	0.33	6	12.0	6	2;22	y	0.45	5	6.0	5	2;10	y	0.00	0	6.0	0	3;9	n	ENSMUSG00000054894.7	Dmac2l	chr12	protein_coding	distal membrane arm assembly complex 2 like
known_NIR_4038	chr12	69771788	69784725	+	69772328	69784725	A5SS	ENSMUST00000222950.2	known	0.62	5	3	5	3	n	0.29	5	12	5	12	y	0.51	19	18	19	18	y	0.29	4	10	4	10	y	0.41	9	13	9	13	y	0.47	8	9	8	9	y	0.48	10	11	10	11	y	0.60	9	6	9	6	y	0.43	6	8	6	8	y	0.21	6	22	6	22	y	0.33	5	10	5	10	y	0.00	0	9	0	9	n	ENSMUSG00000054894.7	Dmac2l	chr12	protein_coding	distal membrane arm assembly complex 2 like
known_NIR_4039	chr12	69771788	69787673	+	69771788;69784835	69784725;69787673	ES	ENSMUST00000021372.6	known	0.00	0	9.5	0	5;14	n	0.08	1	11.5	1	5;18	n	0.04	1	26.0	1	19;33	n	0.00	0	16.0	0	4;28	n	0.00	0	21.0	0	9;33	n	0.06	1	16.5	1	8;25	n	0.00	0	17.5	0	10;25	n	0.00	0	11.5	0	9;14	n	0.25	3	9.0	3	6;12	y	0.00	0	13.0	0	6;20	n	0.09	1	10.0	1	5;15	n	0.22	2	7.0	2	0;14	n	ENSMUSG00000054894.7	Dmac2l	chr12	protein_coding	distal membrane arm assembly complex 2 like
known_NIR_4040	chr12	69771788	69787673	+	69784835	69787673	A5SS&ES	ENSMUST00000220460.2	known	0.00	0	14	0	14	n	0.05	1	18	1	18	n	0.03	1	33	1	33	n	0.00	0	28	0	28	n	0.00	0	33	0	33	n	0.04	1	25	1	25	n	0.00	0	25	0	25	n	0.00	0	14	0	14	n	0.20	3	12	3	12	y	0.00	0	20	0	20	n	0.06	1	15	1	15	n	0.12	2	14	2	14	y	ENSMUSG00000054894.7	Dmac2l	chr12	protein_coding	distal membrane arm assembly complex 2 like
known_NIR_4041	chr12	70505681	70507253	+	70505681;70507164	70507119;70507253	ES	ENSMUST00000021471.13	known	0.00	0	108.0	0	109;107	n	0.00	0	79.5	0	71;88	n	0.00	0	160.5	0	154;167	n	0.00	0	160.0	0	153;167	n	0.00	0	197.5	0	179;216	n	0.00	0	84.0	0	78;90	n	0.02	3	136.0	3	132;140	y	0.00	0	103.5	0	101;106	n	0.00	0	115.0	0	116;114	n	0.00	0	152.5	0	144;161	n	0.00	0	90.5	0	94;87	n	0.00	0	145.0	0	120;170	n	ENSMUSG00000021072.13	Tmx1	chr12	protein_coding	thioredoxin-related transmembrane protein 1
known_NIR_4042	chr12	70505681	70507253	+	70507164	70507253	5pMXE	ENSMUST00000160865.2	known	0.00	0	107	0	107	n	0.00	0	88	0	88	n	0.00	0	167	0	167	n	0.00	0	167	0	167	n	0.00	0	216	0	216	n	0.00	0	90	0	90	n	0.02	3	140	3	140	y	0.00	0	106	0	106	n	0.00	0	114	0	114	n	0.00	0	161	0	161	n	0.00	0	87	0	87	n	0.00	0	170	0	170	n	ENSMUSG00000021072.13	Tmx1	chr12	protein_coding	thioredoxin-related transmembrane protein 1
known_NIR_4043	chr12	71021541	71030093	+	71021541	71025507	A3SS&ES	ENSMUST00000162851.8	known	0.00	0	426	0	426	n	0.00	0	365	0	365	n	0.00	2	477	2	477	y	0.00	2	484	2	484	y	0.01	3	568	3	568	y	0.00	0	246	0	246	n	0.00	2	589	2	589	y	0.00	0	232	0	232	n	0.00	0	444	0	444	n	0.00	2	609	2	609	y	0.01	2	387	2	387	y	0.01	3	525	3	525	y	ENSMUSG00000060073.10	Psma3	chr12	protein_coding	proteasome subunit alpha 3
known_NIR_4044	chr12	71021541	71030093	+	71021541;71025589	71025507;71030093	ES	ENSMUST00000160027.8	known	0.00	0	504.5	0	426;583	n	0.00	0	435.0	0	365;505	n	0.00	2	584.5	2	477;692	y	0.00	2	585.5	2	484;687	y	0.00	3	674.0	3	568;780	y	0.00	0	301.5	0	246;357	n	0.00	2	674.0	2	589;759	y	0.00	0	272.0	0	232;312	n	0.00	0	516.0	0	444;588	n	0.00	2	676.0	2	609;743	y	0.00	2	461.5	2	387;536	y	0.00	3	616.5	3	525;708	y	ENSMUSG00000060073.10	Psma3	chr12	protein_coding	proteasome subunit alpha 3
known_NIR_4045	chr12	71021541	71030093	+	71021541;71025613	71025507;71030093	ES	ENSMUST00000162626.8	known	0.00	0	215.0	0	426;4	n	0.00	0	188.0	0	365;11	n	0.01	2	243.5	2	477;10	y	0.01	2	244.0	2	484;4	y	0.01	3	285.5	3	568;3	y	0.00	0	125.5	0	246;5	n	0.01	2	298.0	2	589;7	y	0.00	0	119.5	0	232;7	n	0.00	0	226.0	0	444;8	n	0.01	2	308.0	2	609;7	y	0.01	2	194.5	2	387;2	y	0.01	3	266.5	3	525;8	y	ENSMUSG00000060073.10	Psma3	chr12	protein_coding	proteasome subunit alpha 3
known_NIR_4046	chr12	71021541;71025589	71025507;71035198	+	71021541;71033709	71030093;71035198	MXE	ENSMUST00000160864.8	known	0.42	213.0	290.5	426;0	0;581	n	0.38	182.5	296.5	365;0	0;593	n	0.41	239.0	338.0	477;1	2;674	n	0.45	242.0	300.0	484;0	2;598	n	0.45	285.0	342.0	568;2	3;681	y	0.43	123.0	161.5	246;0	0;323	n	0.44	294.5	374.0	589;0	2;746	n	0.44	116.0	145.5	232;0	0;291	n	0.47	222.0	253.5	444;0	0;507	n	0.43	304.5	409.5	609;0	2;817	n	0.37	195.0	330.0	387;3	2;658	y	0.41	262.5	378.5	525;0	3;754	n	ENSMUSG00000060073.10	Psma3	chr12	protein_coding	proteasome subunit alpha 3
known_NIR_4047	chr12	71025589	71030093	+	71025589	71035198	A3SS	ENSMUST00000162851.8	known	1.00	583	0	583	0	n	1.00	505	0	505	0	n	1.00	692	1	692	1	n	1.00	687	0	687	0	n	1.00	780	2	780	2	y	1.00	357	0	357	0	n	1.00	759	0	759	0	n	1.00	312	0	312	0	n	1.00	588	0	588	0	n	1.00	743	0	743	0	n	0.99	536	3	536	3	y	1.00	708	0	708	0	n	ENSMUSG00000060073.10	Psma3	chr12	protein_coding	proteasome subunit alpha 3
known_NIR_4048	chr12	71025589	71030098	+	71025589	71030093	A3SS	ENSMUST00000160027.8	known	0.11	70	583	70	583	y	0.08	42	505	42	505	y	0.07	50	692	50	692	y	0.04	29	687	29	687	y	0.08	72	780	72	780	y	0.07	25	357	25	357	y	0.09	72	759	72	759	y	0.10	34	312	34	312	y	0.08	50	588	50	588	y	0.07	52	743	52	743	y	0.09	53	536	53	536	y	0.10	75	708	75	708	y	ENSMUSG00000060073.10	Psma3	chr12	protein_coding	proteasome subunit alpha 3
known_NIR_4049	chr12	71025589	71030098	+	71025589	71035198	A3SS	ENSMUST00000162851.8	known	1.00	70	0	70	0	n	1.00	42	0	42	0	n	0.98	50	1	50	1	n	1.00	29	0	29	0	n	0.97	72	2	72	2	y	1.00	25	0	25	0	n	1.00	72	0	72	0	n	1.00	34	0	34	0	n	1.00	50	0	50	0	n	1.00	52	0	52	0	n	0.95	53	3	53	3	y	1.00	75	0	75	0	n	ENSMUSG00000060073.10	Psma3	chr12	protein_coding	proteasome subunit alpha 3
known_NIR_4050	chr12	71025589	71035198	+	71033709	71035198	A5SS&ES	ENSMUST00000162626.8	known	0.00	0	581	0	581	n	0.00	0	593	0	593	n	0.00	1	674	1	674	n	0.00	0	598	0	598	n	0.00	2	681	2	681	y	0.00	0	323	0	323	n	0.00	0	746	0	746	n	0.00	0	291	0	291	n	0.00	0	507	0	507	n	0.00	0	817	0	817	n	0.00	3	658	3	658	y	0.00	0	754	0	754	n	ENSMUSG00000060073.10	Psma3	chr12	protein_coding	proteasome subunit alpha 3
known_NIR_4051	chr12	71025613	71030093	+	71025589	71030093	A5SS	ENSMUST00000160027.8	known	0.01	4	583	4	583	y	0.02	11	505	11	505	y	0.01	10	692	10	692	y	0.01	4	687	4	687	y	0.00	3	780	3	780	y	0.01	5	357	5	357	y	0.01	7	759	7	759	y	0.02	7	312	7	312	y	0.01	8	588	8	588	y	0.01	7	743	7	743	y	0.00	2	536	2	536	y	0.01	8	708	8	708	y	ENSMUSG00000060073.10	Psma3	chr12	protein_coding	proteasome subunit alpha 3
known_NIR_4052	chr12	71037305	71039787	+	71037305	71041125	A3SS	ENSMUST00000162898.2	known	1.00	994	2	994	2	y	1.00	1090	0	1090	0	n	1.00	940	0	940	0	n	1.00	858	0	858	0	n	1.00	1116	0	1116	0	n	1.00	463	0	463	0	n	1.00	1204	1	1204	1	n	1.00	490	0	490	0	n	1.00	885	0	885	0	n	1.00	1178	0	1178	0	n	1.00	1058	0	1058	0	n	1.00	1162	0	1162	0	n	ENSMUSG00000060073.10	Psma3	chr12	protein_coding	proteasome subunit alpha 3
known_NIR_4053	chr12	71040344	71041125	+	71037305	71041125	A5SS	ENSMUST00000162898.2	known	1.00	813	2	813	2	y	1.00	933	0	933	0	n	1.00	779	0	779	0	n	1.00	680	0	680	0	n	1.00	909	0	909	0	n	1.00	450	0	450	0	n	1.00	1021	1	1021	1	n	1.00	413	0	413	0	n	1.00	788	0	788	0	n	1.00	1004	0	1004	0	n	1.00	927	0	927	0	n	1.00	909	0	909	0	n	ENSMUSG00000060073.10	Psma3	chr12	protein_coding	proteasome subunit alpha 3
known_NIR_4054	chr12	71170460	71172183	-	71170460	71172236	A5SS	ENSMUST00000021486.10	known	0.00	0	134	0	134	n	0.00	0	121	0	121	n	0.00	0	79	0	79	n	0.01	2	136	2	136	y	0.00	0	148	0	148	n	0.00	0	55	0	55	n	0.00	0	170	0	170	n	0.00	0	59	0	59	n	0.00	0	124	0	124	n	0.00	0	171	0	171	n	0.00	0	158	0	158	n	0.00	0	154	0	154	n	ENSMUSG00000021079.17	Timm9	chr12	protein_coding	translocase of inner mitochondrial membrane 9
known_NIR_4055	chr12	71173171;71178860	71178775;71183329	-	71173171	71183329	cassetteExon	ENSMUST00000021486.10	known	0.70	39.0	17	58;20	17	y	0.77	53.0	16	79;27	16	y	0.63	37.0	22	53;21	22	y	0.70	51.5	22	77;26	22	y	0.76	65.0	21	106;24	21	y	1.00	21.0	0	31;11	0	n	0.73	71.5	27	96;47	27	y	0.71	33.5	14	48;19	14	y	0.86	67.5	11	102;33	11	y	0.78	72.0	20	101;43	20	y	0.76	63.5	20	102;25	20	y	0.72	68.5	27	109;28	27	y	ENSMUSG00000021079.17	Timm9	chr12	protein_coding	translocase of inner mitochondrial membrane 9
known_NIR_4056	chr12	71178860	71183329	-	71178860;71179416	71179281;71183329	ES	ENSMUST00000166120.9	known	0.43	20	26.5	20	38;15	y	0.64	27	15.0	27	27;3	y	0.67	21	10.5	21	17;4	y	0.58	26	19.0	26	27;11	y	0.48	24	25.5	24	36;15	y	0.55	11	9.0	11	13;5	y	0.70	47	20.0	47	32;8	y	0.63	19	11.0	19	13;9	y	0.54	33	28.5	33	43;14	y	0.64	43	24.5	43	36;13	y	0.57	25	18.5	25	28;9	y	0.48	28	30.5	28	43;18	y	ENSMUSG00000021079.17	Timm9	chr12	protein_coding	translocase of inner mitochondrial membrane 9
known_NIR_4057	chr12	71178860;71179532	71179281;71183329	-	71178860	71183329	cassetteExon	ENSMUST00000221892.2	known	0.49	19.0	20	38;0	20	n	0.33	13.5	27	27;0	27	n	0.29	8.5	21	17;0	21	n	0.36	14.5	26	27;2	26	y	0.45	19.5	24	36;3	24	y	0.37	6.5	11	13;0	11	n	0.26	16.5	47	32;1	47	n	0.25	6.5	19	13;0	19	n	0.39	21.5	33	43;0	33	n	0.30	18.5	43	36;1	43	n	0.36	14.0	25	28;0	25	n	0.44	22.0	28	43;1	28	n	ENSMUSG00000021079.17	Timm9	chr12	protein_coding	translocase of inner mitochondrial membrane 9
known_NIR_4058	chr12	71178860;71179572	71179281;71183329	-	71178860	71183329	cassetteExon	ENSMUST00000221892.2	known	0.51	21.0	20	38;4	20	y	0.41	19.0	27	27;11	27	y	0.33	10.5	21	17;4	21	y	0.41	18.0	26	27;9	26	y	0.50	24.0	24	36;12	24	y	0.39	7.0	11	13;1	11	n	0.32	22.0	47	32;12	47	y	0.34	10.0	19	13;7	19	y	0.43	25.0	33	43;7	33	y	0.34	22.0	43	36;8	43	y	0.44	20.0	25	28;12	25	y	0.51	29.5	28	43;16	28	y	ENSMUSG00000021079.17	Timm9	chr12	protein_coding	translocase of inner mitochondrial membrane 9
known_NIR_4059	chr12	71179416	71183329	-	71173171	71183329	A3SS	ENSMUST00000021486.10	known	0.47	15	17	15	17	y	0.16	3	16	3	16	y	0.15	4	22	4	22	y	0.33	11	22	11	22	y	0.42	15	21	15	21	y	1.00	5	0	5	0	n	0.23	8	27	8	27	y	0.39	9	14	9	14	y	0.56	14	11	14	11	y	0.39	13	20	13	20	y	0.31	9	20	9	20	y	0.40	18	27	18	27	y	ENSMUSG00000021079.17	Timm9	chr12	protein_coding	translocase of inner mitochondrial membrane 9
known_NIR_4060	chr12	71179532	71183329	-	71173171	71183329	A3SS	ENSMUST00000021486.10	known	0.00	0	17	0	17	n	0.00	0	16	0	16	n	0.00	0	22	0	22	n	0.08	2	22	2	22	y	0.12	3	21	3	21	y	-	-	-	-	-	-	0.04	1	27	1	27	n	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.05	1	20	1	20	n	0.00	0	20	0	20	n	0.04	1	27	1	27	n	ENSMUSG00000021079.17	Timm9	chr12	protein_coding	translocase of inner mitochondrial membrane 9
known_NIR_4061	chr12	71179532	71183329	-	71179416	71183329	A3SS	ENSMUST00000166120.9	known	0.00	0	15	0	15	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.15	2	11	2	11	y	0.17	3	15	3	15	y	0.00	0	5	0	5	n	0.11	1	8	1	8	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.07	1	13	1	13	n	0.00	0	9	0	9	n	0.05	1	18	1	18	n	ENSMUSG00000021079.17	Timm9	chr12	protein_coding	translocase of inner mitochondrial membrane 9
known_NIR_4062	chr12	71179572	71183329	-	71173171	71183329	A3SS	ENSMUST00000021486.10	known	0.19	4	17	4	17	y	0.41	11	16	11	16	y	0.15	4	22	4	22	y	0.29	9	22	9	22	y	0.36	12	21	12	21	y	1.00	1	0	1	0	n	0.31	12	27	12	27	y	0.33	7	14	7	14	y	0.39	7	11	7	11	y	0.29	8	20	8	20	y	0.38	12	20	12	20	y	0.37	16	27	16	27	y	ENSMUSG00000021079.17	Timm9	chr12	protein_coding	translocase of inner mitochondrial membrane 9
known_NIR_4063	chr12	71179572	71183329	-	71179416	71183329	A3SS	ENSMUST00000166120.9	known	0.21	4	15	4	15	y	0.79	11	3	11	3	y	0.50	4	4	4	4	n	0.45	9	11	9	11	y	0.44	12	15	12	15	y	0.17	1	5	1	5	n	0.60	12	8	12	8	y	0.44	7	9	7	9	y	0.33	7	14	7	14	y	0.38	8	13	8	13	y	0.57	12	9	12	9	y	0.47	16	18	16	18	y	ENSMUSG00000021079.17	Timm9	chr12	protein_coding	translocase of inner mitochondrial membrane 9
known_NIR_4064	chr12	71179572	71183329	-	71179532	71183329	A3SS	ENSMUST00000221367.2	known	1.00	4	0	4	0	n	1.00	11	0	11	0	n	1.00	4	0	4	0	n	0.82	9	2	9	2	y	0.80	12	3	12	3	y	1.00	1	0	1	0	n	0.92	12	1	12	1	n	1.00	7	0	7	0	n	1.00	7	0	7	0	n	0.89	8	1	8	1	n	1.00	12	0	12	0	n	0.94	16	1	16	1	n	ENSMUSG00000021079.17	Timm9	chr12	protein_coding	translocase of inner mitochondrial membrane 9
known_NIR_4065	chr12	71180771	71183329	-	71173171	71183329	A3SS	ENSMUST00000021486.10	known	0.59	24	17	24	17	y	0.48	15	16	15	16	y	0.49	21	22	21	22	y	0.67	45	22	45	22	y	0.62	35	21	35	21	y	1.00	9	0	9	0	n	0.62	44	27	44	27	y	0.46	12	14	12	14	y	0.72	28	11	28	11	y	0.58	28	20	28	20	y	0.56	25	20	25	20	y	0.48	25	27	25	27	y	ENSMUSG00000021079.17	Timm9	chr12	protein_coding	translocase of inner mitochondrial membrane 9
known_NIR_4066	chr12	71180771	71183329	-	71178860	71183329	A3SS	ENSMUST00000221892.2	known	0.55	24	20	24	20	y	0.36	15	27	15	27	y	0.50	21	21	21	21	y	0.63	45	26	45	26	y	0.59	35	24	35	24	y	0.45	9	11	9	11	y	0.48	44	47	44	47	y	0.39	12	19	12	19	y	0.46	28	33	28	33	y	0.39	28	43	28	43	y	0.50	25	25	25	25	y	0.47	25	28	25	28	y	ENSMUSG00000021079.17	Timm9	chr12	protein_coding	translocase of inner mitochondrial membrane 9
known_NIR_4067	chr12	71180771	71183329	-	71179416	71183329	A3SS	ENSMUST00000166120.9	known	0.62	24	15	24	15	y	0.83	15	3	15	3	y	0.84	21	4	21	4	y	0.80	45	11	45	11	y	0.70	35	15	35	15	y	0.64	9	5	9	5	y	0.85	44	8	44	8	y	0.57	12	9	12	9	y	0.67	28	14	28	14	y	0.68	28	13	28	13	y	0.74	25	9	25	9	y	0.58	25	18	25	18	y	ENSMUSG00000021079.17	Timm9	chr12	protein_coding	translocase of inner mitochondrial membrane 9
known_NIR_4068	chr12	71180771	71183329	-	71179532	71183329	A3SS	ENSMUST00000221367.2	known	1.00	24	0	24	0	n	1.00	15	0	15	0	n	1.00	21	0	21	0	n	0.96	45	2	45	2	y	0.92	35	3	35	3	y	1.00	9	0	9	0	n	0.98	44	1	44	1	n	1.00	12	0	12	0	n	1.00	28	0	28	0	n	0.97	28	1	28	1	n	1.00	25	0	25	0	n	0.96	25	1	25	1	n	ENSMUSG00000021079.17	Timm9	chr12	protein_coding	translocase of inner mitochondrial membrane 9
known_NIR_4069	chr12	71180771	71183329	-	71179572	71183329	A3SS	ENSMUST00000220482.2	known	0.86	24	4	24	4	y	0.58	15	11	15	11	y	0.84	21	4	21	4	y	0.83	45	9	45	9	y	0.74	35	12	35	12	y	0.90	9	1	9	1	n	0.79	44	12	44	12	y	0.63	12	7	12	7	y	0.80	28	7	28	7	y	0.78	28	8	28	8	y	0.68	25	12	25	12	y	0.61	25	16	25	16	y	ENSMUSG00000021079.17	Timm9	chr12	protein_coding	translocase of inner mitochondrial membrane 9
known_NIR_4070	chr12	71878105	71942501	+	71877970	71942501	A5SS	ENSMUST00000223272.2	known	1.00	4	0	4	0	n	0.80	4	1	4	1	n	0.33	3	6	3	6	n	0.23	3	10	3	10	y	0.30	3	7	3	7	y	0.33	1	2	1	2	n	0.60	3	2	3	2	n	0.67	4	2	4	2	n	0.46	6	7	6	7	y	0.58	7	5	7	5	y	0.50	4	4	4	4	n	0.50	9	9	9	9	y	ENSMUSG00000034574.11	Daam1	chr12	protein_coding	dishevelled associated activator of morphogenesis 1
known_NIR_4071	chr12	72126430	72131305	-	72126430	72131423	A5SS	ENSMUST00000019862.3	known	0.02	1	50	1	50	n	0.02	1	50	1	50	n	0.03	1	29	1	29	n	0.00	0	67	0	67	n	0.05	3	60	3	60	y	0.00	0	23	0	23	n	0.02	1	65	1	65	n	0.03	1	38	1	38	n	0.10	6	54	6	54	y	0.06	5	85	5	85	y	0.04	2	48	2	48	y	0.08	5	57	5	57	y	ENSMUSG00000019718.9	L3hypdh	chr12	protein_coding	L-3-hydroxyproline dehydratase (trans-)
known_NIR_4072	chr12	72132957	72136089	+	72132619	72136089	A5SS	ENSMUST00000132371.8	known	1.00	49	0	49	0	n	1.00	25	0	25	0	n	1.00	32	0	32	0	n	1.00	55	0	55	0	n	0.97	67	2	67	2	y	1.00	14	0	14	0	n	1.00	40	0	40	0	n	1.00	25	0	25	0	n	1.00	19	0	19	0	n	1.00	57	0	57	0	n	1.00	27	0	27	0	n	1.00	34	0	34	0	n	ENSMUSG00000005078.17	Jkamp	chr12	protein_coding	JNK1/MAPK8-associated membrane protein
known_NIR_4073	chr12	72132957	72136107	+	72132957	72136089	A3SS	ENSMUST00000057257.10	known	0.27	18	49	18	49	y	0.31	11	25	11	25	y	0.27	12	32	12	32	y	0.25	18	55	18	55	y	0.20	17	67	17	67	y	0.52	15	14	15	14	y	0.38	24	40	24	40	y	0.31	11	25	11	25	y	0.41	13	19	13	19	y	0.21	15	57	15	57	y	0.25	9	27	9	27	y	0.19	8	34	8	34	y	ENSMUSG00000005078.17	Jkamp	chr12	protein_coding	JNK1/MAPK8-associated membrane protein
known_NIR_4074	chr12	72655768	72658490	-	72655768	72666196	A5SS	ENSMUST00000207585.2	known	0.95	81	4	81	4	y	0.91	69	7	69	7	y	1.00	5	0	5	0	n	0.98	96	2	96	2	y	0.93	94	7	94	7	y	0.86	12	2	12	2	y	0.93	126	9	126	9	y	0.84	32	6	32	6	y	0.94	124	8	124	8	y	0.94	141	9	141	9	y	0.95	98	5	98	5	y	0.93	86	6	86	6	y	ENSMUSG00000109482.3	Gm4756	chr12	protein_coding	predicted gene 4756
known_NIR_4075	chr12	72659436	72666196	-	72655768	72666196	A3SS	ENSMUST00000207585.2	known	0.95	72	4	72	4	y	0.92	78	7	78	7	y	1.00	2	0	2	0	n	0.98	127	2	127	2	y	0.95	126	7	126	7	y	0.83	10	2	10	2	y	0.90	83	9	83	9	y	0.87	41	6	41	6	y	0.93	109	8	109	8	y	0.95	177	9	177	9	y	0.96	110	5	110	5	y	0.93	76	6	76	6	y	ENSMUSG00000109482.3	Gm4756	chr12	protein_coding	predicted gene 4756
known_NIR_4076	chr12	72668728	72675448	-	72668728	72674837	A5SS&ES	ENSMUST00000222413.2	known	0.00	0	94	0	94	n	0.00	0	77	0	77	n	0.00	0	2	0	2	n	0.01	1	179	1	179	n	0.00	0	183	0	183	n	0.00	0	14	0	14	n	0.02	4	159	4	159	y	0.00	0	38	0	38	n	0.00	0	160	0	160	n	0.00	1	219	1	219	n	0.00	0	111	0	111	n	0.02	2	113	2	113	y	ENSMUSG00000109482.3	Gm4756	chr12	protein_coding	predicted gene 4756
known_NIR_4077	chr12	72668728	72675448	-	72668728	72675501	A5SS	ENSMUST00000207585.2	known	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	1	0	1	n	0.06	1	16	1	16	n	0.00	0	20	0	20	n	0.00	0	1	0	1	n	0.17	4	19	4	19	y	0.00	0	3	0	3	n	0.00	0	16	0	16	n	0.03	1	31	1	31	n	0.00	0	17	0	17	n	0.11	2	16	2	16	y	ENSMUSG00000109482.3	Gm4756	chr12	protein_coding	predicted gene 4756
known_NIR_4078	chr12	72668728	72675501	-	72668728;72674989	72674837;72675501	ES	ENSMUST00000222413.2	known	0.09	9	88.5	9	94;83	y	0.17	13	64.5	13	77;52	y	0.25	1	3.0	1	2;4	n	0.10	16	148.5	16	179;118	y	0.12	20	150.0	20	183;117	y	0.06	1	15.0	1	14;16	n	0.12	19	135.0	19	159;111	y	0.07	3	41.0	3	38;44	y	0.12	16	120.0	16	160;80	y	0.14	31	183.0	31	219;147	y	0.14	17	105.5	17	111;100	y	0.14	16	102.0	16	113;91	y	ENSMUSG00000109482.3	Gm4756	chr12	protein_coding	predicted gene 4756
known_NIR_4079	chr12	72703313	72706118	-	72703313	72704102	A5SS&ES	ENSMUST00000221750.2	known	0.00	0	95	0	95	n	0.00	0	86	0	86	n	0.00	0	84	0	84	n	0.00	0	109	0	109	n	0.00	0	155	0	155	n	0.00	0	37	0	37	n	0.01	1	170	1	170	n	0.00	0	58	0	58	n	0.01	1	109	1	109	n	0.01	2	203	2	203	y	0.00	0	126	0	126	n	0.00	0	107	0	107	n	ENSMUSG00000021094.11	Dhrs7	chr12	protein_coding	dehydrogenase/reductase (SDR family) member 7
known_NIR_4080	chr12	72703313	72706118	-	72703313;72704208	72704102;72706118	ES	ENSMUST00000021512.11	known	0.00	0	85.5	0	95;76	n	0.00	0	81.5	0	86;77	n	0.00	0	74.5	0	84;65	n	0.00	0	89.0	0	109;69	n	0.00	0	134.0	0	155;113	n	0.00	0	39.0	0	37;41	n	0.01	1	162.5	1	170;155	n	0.00	0	51.5	0	58;45	n	0.01	1	105.0	1	109;101	n	0.01	2	182.0	2	203;161	y	0.00	0	112.0	0	126;98	n	0.00	0	96.0	0	107;85	n	ENSMUSG00000021094.11	Dhrs7	chr12	protein_coding	dehydrogenase/reductase (SDR family) member 7
known_NIR_4081	chr12	72833563	72837407	+	72833563	72840486	A3SS	ENSMUST00000222896.2	known	1.00	216	0	216	0	n	1.00	210	0	210	0	n	1.00	229	0	229	0	n	1.00	217	1	217	1	n	0.99	346	2	346	2	y	1.00	154	0	154	0	n	0.99	366	2	366	2	y	1.00	166	0	166	0	n	1.00	204	0	204	0	n	1.00	344	0	344	0	n	1.00	263	0	263	0	n	1.00	316	0	316	0	n	ENSMUSG00000021096.12	Ppm1a	chr12	protein_coding	protein phosphatase 1A, magnesium dependent, alpha isoform
known_NIR_4082	chr12	72839609	72840486	+	72833563	72840486	A5SS	ENSMUST00000222896.2	known	1.00	219	0	219	0	n	1.00	221	0	221	0	n	1.00	239	0	239	0	n	1.00	218	1	218	1	n	0.99	322	2	322	2	y	1.00	123	0	123	0	n	0.99	358	2	358	2	y	1.00	135	0	135	0	n	1.00	188	0	188	0	n	1.00	357	0	357	0	n	1.00	275	0	275	0	n	1.00	285	0	285	0	n	ENSMUSG00000021096.12	Ppm1a	chr12	protein_coding	protein phosphatase 1A, magnesium dependent, alpha isoform
known_NIR_4083	chr12	73327406	73327779	-	73327406	73329386	A5SS	ENSMUST00000220701.2	known	1.00	19	0	19	0	n	0.96	24	1	24	1	n	0.92	11	1	11	1	n	0.90	18	2	18	2	y	1.00	25	0	25	0	n	1.00	13	0	13	0	n	0.93	27	2	27	2	y	1.00	12	0	12	0	n	1.00	15	0	15	0	n	0.94	29	2	29	2	y	0.94	15	1	15	1	n	0.97	33	1	33	1	n	ENSMUSG00000034442.12	Trmt5	chr12	protein_coding	TRM5 tRNA methyltransferase 5
known_NIR_4084	chr12	73327406	73329386	-	73327406;73328430	73327779;73329386	ES	ENSMUST00000116420.4	known	0.00	0	22.0	0	19;25	n	0.05	1	19.0	1	24;14	n	0.07	1	13.0	1	11;15	n	0.08	2	22.5	2	18;27	y	0.00	0	23.0	0	25;21	n	0.00	0	12.0	0	13;11	n	0.08	2	24.5	2	27;22	y	0.00	0	8.0	0	12;4	n	0.00	0	18.0	0	15;21	n	0.06	2	30.5	2	29;32	y	0.04	1	22.5	1	15;30	n	0.04	1	26.5	1	33;20	n	ENSMUSG00000034442.12	Trmt5	chr12	protein_coding	TRM5 tRNA methyltransferase 5
known_NIR_4085	chr12	73328430	73329386	-	73327406	73329386	A3SS	ENSMUST00000220701.2	known	1.00	25	0	25	0	n	0.93	14	1	14	1	n	0.94	15	1	15	1	n	0.93	27	2	27	2	y	1.00	21	0	21	0	n	1.00	11	0	11	0	n	0.92	22	2	22	2	y	1.00	4	0	4	0	n	1.00	21	0	21	0	n	0.94	32	2	32	2	y	0.97	30	1	30	1	n	0.95	20	1	20	1	n	ENSMUSG00000034442.12	Trmt5	chr12	protein_coding	TRM5 tRNA methyltransferase 5
known_NIR_4086	chr12	73332049;73332749	73332678;73333458	-	73332049	73333458	cassetteExon	ENSMUST00000116420.4	known	0.43	3.0	4	5;1	4	n	1.00	2.0	0	3;1	0	n	0.29	2.5	6	5;0	6	n	0.80	4.0	1	6;2	1	n	0.11	1.0	8	2;0	8	n	0.00	0.0	8	0;0	8	n	0.40	6.0	9	9;3	9	y	0.27	1.5	4	3;0	4	n	0.18	2.0	9	3;1	9	n	0.45	2.5	3	4;1	3	n	1.00	2.0	0	4;0	0	n	0.33	2.5	5	5;0	5	n	ENSMUSG00000034442.12	Trmt5	chr12	protein_coding	TRM5 tRNA methyltransferase 5
known_NIR_4087	chr12	73339007	73365751	+	73339007;73356971	73356919;73365751	ES	ENSMUST00000140523.8	known	0.00	0	6.5	0	10;3	n	0.46	3	3.5	3	6;1	n	0.00	0	3.5	0	5;2	n	0.00	0	3.5	0	4;3	n	0.13	1	6.5	1	8;5	n	0.00	0	1.5	0	2;1	n	0.00	0	3.5	0	3;4	n	0.00	0	5.0	0	4;6	n	0.31	2	4.5	2	3;6	y	0.00	0	4.0	0	5;3	n	0.29	1	2.5	1	5;0	n	0.46	3	3.5	3	4;3	y	ENSMUSG00000044712.16	Slc38a6	chr12	protein_coding	solute carrier family 38, member 6
known_NIR_4088	chr12	73356971	73357764	+	73356971	73365751	A3SS	ENSMUST00000140523.8	known	0.73	8	3	8	3	y	0.75	3	1	3	1	n	0.50	2	2	2	2	n	0.50	3	3	3	3	n	0.00	0	5	0	5	n	0.50	1	1	1	1	n	0.20	1	4	1	4	n	0.33	3	6	3	6	n	0.25	2	6	2	6	n	0.50	3	3	3	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000044712.16	Slc38a6	chr12	protein_coding	solute carrier family 38, member 6
known_NIR_4089	chr12	73384342	73386648	+	73384342	73388182	A3SS	ENSMUST00000140523.8	known	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	14	0	14	n	-	-	-	-	-	-	0.18	2	9	2	9	y	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.20	1	4	1	4	n	ENSMUSG00000044712.16	Slc38a6	chr12	protein_coding	solute carrier family 38, member 6
known_NIR_4090	chr12	73987405	73988462	+	73987405	73988504	A3SS	ENSMUST00000110461.8	known	0.64	39	22	39	22	y	0.69	35	16	35	16	y	0.69	195	87	195	87	y	0.58	42	30	42	30	y	0.67	62	31	62	31	y	0.71	59	24	59	24	y	0.63	57	33	57	33	y	0.72	43	17	43	17	y	0.67	34	17	34	17	y	0.68	66	31	66	31	y	0.64	47	27	47	27	y	0.72	78	31	78	31	y	ENSMUSG00000021109.14	Hif1a	chr12	protein_coding	hypoxia inducible factor 1, alpha subunit
known_NIR_4091	chr12	74029353	74029491	+	74029353	74030637	A3SS	ENSMUST00000021532.6	known	0.00	0	16	0	16	n	0.00	0	32	0	32	n	0.00	0	57	0	57	n	0.00	0	16	0	16	n	0.04	1	26	1	26	n	0.04	1	22	1	22	n	0.08	2	23	2	23	y	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	18	0	18	n	0.00	0	20	0	20	n	0.09	2	21	2	21	y	ENSMUSG00000021113.6	Snapc1	chr12	protein_coding	small nuclear RNA activating complex, polypeptide 1
known_NIR_4092	chr12	75531998	75562376	-	75531998;75540289	75540188;75562376	ES	ENSMUST00000021447.9	known	0.00	0	50.0	0	48;52	n	0.00	0	27.5	0	19;36	n	0.00	0	51.0	0	54;48	n	0.00	0	64.0	0	73;55	n	0.03	2	77.5	2	82;73	y	0.00	0	33.5	0	40;27	n	0.00	0	54.5	0	65;44	n	0.02	1	55.5	1	53;58	n	0.00	0	33.5	0	32;35	n	0.02	1	56.5	1	62;51	n	0.00	0	35.0	0	39;31	n	0.00	0	61.0	0	52;70	n	ENSMUSG00000021051.11	Ppp2r5e	chr12	protein_coding	protein phosphatase 2, regulatory subunit B', epsilon
known_NIR_4093	chr12	75531998	75562376	-	75540289	75562376	3pMXE	ENSMUST00000218716.2	known	0.00	0	52	0	52	n	0.00	0	36	0	36	n	0.00	0	48	0	48	n	0.00	0	55	0	55	n	0.03	2	73	2	73	y	0.00	0	27	0	27	n	0.00	0	44	0	44	n	0.02	1	58	1	58	n	0.00	0	35	0	35	n	0.02	1	51	1	51	n	0.00	0	31	0	31	n	0.00	0	70	0	70	n	ENSMUSG00000021051.11	Ppp2r5e	chr12	protein_coding	protein phosphatase 2, regulatory subunit B', epsilon
known_NIR_4094	chr12	75540289	75639943	-	75540289;75562572	75562376;75639943	ES	ENSMUST00000021447.9	known	0.03	2	59.5	2	52;67	y	0.05	2	36.5	2	36;37	y	0.04	2	49.5	2	48;51	y	0.04	3	66.0	3	55;77	y	0.01	1	85.0	1	73;97	n	0.00	0	42.5	0	27;58	n	0.12	8	59.0	8	44;74	y	0.05	3	55.0	3	58;52	y	0.05	2	41.0	2	35;47	y	0.02	1	62.0	1	51;73	n	0.00	0	32.0	0	31;33	n	0.02	1	64.0	1	70;58	n	ENSMUSG00000021051.11	Ppp2r5e	chr12	protein_coding	protein phosphatase 2, regulatory subunit B', epsilon
known_NIR_4095	chr12	75540289	75639943	-	75562572	75639943	3pMXE	ENSMUST00000218930.2	known	0.03	2	67	2	67	y	0.05	2	37	2	37	y	0.04	2	51	2	51	y	0.04	3	77	3	77	y	0.01	1	97	1	97	n	0.00	0	58	0	58	n	0.10	8	74	8	74	y	0.05	3	52	3	52	y	0.04	2	47	2	47	y	0.01	1	73	1	73	n	0.00	0	33	0	33	n	0.02	1	58	1	58	n	ENSMUSG00000021051.11	Ppp2r5e	chr12	protein_coding	protein phosphatase 2, regulatory subunit B', epsilon
known_NIR_4096	chr12	76069918	76070793	+	76069918	76070790	A3SS	ENSMUST00000044217.16	known	1.00	9	0	9	0	n	1.00	2	0	2	0	n	0.78	7	2	7	2	n	1.00	11	0	11	0	n	1.00	10	0	10	0	n	1.00	6	0	6	0	n	0.90	9	1	9	1	n	1.00	8	0	8	0	n	1.00	3	0	3	0	n	0.82	9	2	9	2	y	1.00	4	0	4	0	n	0.86	6	1	6	1	n	ENSMUSG00000063450.15	Syne2	chr12	protein_coding	spectrin repeat containing, nuclear envelope 2
known_NIR_4097	chr12	76146286;76146870	76146802;76147766	+	76146286	76147766	cassetteExon	ENSMUST00000044217.16	known	0.14	4.0	24	3;5	24	y	0.10	3.0	27	1;5	27	n	0.08	1.5	18	2;1	18	n	0.05	1.5	26	1;2	26	n	0.14	4.0	25	3;5	25	y	0.33	3.0	6	2;4	6	y	0.12	3.5	25	3;4	25	y	0.06	1.5	23	1;2	23	n	0.05	1.0	21	0;2	21	n	0.04	1.5	41	1;2	41	n	0.10	2.0	18	2;2	18	y	0.06	2.0	33	1;3	33	n	ENSMUSG00000063450.15	Syne2	chr12	protein_coding	spectrin repeat containing, nuclear envelope 2
known_NIR_4098	chr12	76152891	76154202	+	76152891	76154258	A3SS	ENSMUST00000044217.16	known	0.00	0	35	0	35	n	0.05	1	20	1	20	n	0.00	0	23	0	23	n	0.00	0	27	0	27	n	0.00	0	43	0	43	n	0.09	1	10	1	10	n	0.03	1	30	1	30	n	0.00	0	15	0	15	n	0.00	0	19	0	19	n	0.00	0	48	0	48	n	0.14	5	30	5	30	y	0.00	0	43	0	43	n	ENSMUSG00000063450.15	Syne2	chr12	protein_coding	spectrin repeat containing, nuclear envelope 2
known_NIR_4099	chr12	76154989	76155641	+	76154989	76155638	A3SS	ENSMUST00000143031.8	known	1.00	40	0	40	0	n	0.92	22	2	22	2	y	0.87	20	3	20	3	y	1.00	38	0	38	0	n	1.00	49	0	49	0	n	1.00	16	0	16	0	n	0.96	53	2	53	2	y	0.92	11	1	11	1	n	0.96	26	1	26	1	n	0.95	42	2	42	2	y	1.00	33	0	33	0	n	0.92	48	4	48	4	y	ENSMUSG00000063450.15	Syne2	chr12	protein_coding	spectrin repeat containing, nuclear envelope 2
known_NIR_4100	chr12	76302318	76326178	+	76302318	76317192	3pMXE	ENSMUST00000218110.2	known	0.03	5	168	5	168	y	0.01	1	113	1	113	n	0.01	1	67	1	67	n	0.03	7	267	7	267	y	0.04	9	239	9	239	y	0.04	2	51	2	51	y	0.01	2	167	2	167	y	0.01	1	94	1	94	n	0.01	1	145	1	145	n	0.01	3	229	3	229	y	0.01	1	143	1	143	n	0.03	7	252	7	252	y	ENSMUSG00000021048.8	Mthfd1	chr12	protein_coding	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase
known_NIR_4101	chr12	76302318	76326178	+	76302318;76317276	76317192;76326178	ES	ENSMUST00000021443.7	known	0.03	5	140.0	5	168;112	y	0.01	1	98.5	1	113;84	n	0.02	1	61.5	1	67;56	n	0.03	7	237.0	7	267;207	y	0.04	9	207.0	9	239;175	y	0.04	2	49.5	2	51;48	y	0.01	2	148.5	2	167;130	y	0.01	1	76.0	1	94;58	n	0.01	1	145.5	1	145;146	n	0.01	3	207.5	3	229;186	y	0.01	1	136.0	1	143;129	n	0.03	7	257.0	7	252;262	y	ENSMUSG00000021048.8	Mthfd1	chr12	protein_coding	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase
known_NIR_4102	chr12	76396973	76402663	-	76397047	76402663	A3SS	ENSMUST00000176102.8	known	0.25	1	3	1	3	n	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.17	2	10	2	10	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000056459.15	Zbtb25	chr12	protein_coding	zinc finger and BTB domain containing 25
known_NIR_4103	chr12	76593926	76594150	-	76593945	76594150	A3SS	ENSMUST00000219353.2	known	0.22	4	14	4	14	y	0.00	0	12	0	12	n	0.18	7	32	7	32	y	0.14	2	12	2	12	y	0.27	9	24	9	24	y	0.15	3	17	3	17	y	0.43	6	8	6	8	y	0.00	0	30	0	30	n	0.00	0	13	0	13	n	0.46	6	7	6	7	y	0.11	2	17	2	17	y	0.20	2	8	2	8	y	ENSMUSG00000112388.2	AI463170	chr12	lncRNA	expressed sequence AI463170
known_NIR_4104	chr12	76593960	76606903	+	76580592	76606903	A5SS	ENSMUST00000075249.6	known	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.10	2	19	2	19	y	0.00	0	28	0	28	n	0.00	0	24	0	24	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.00	0	32	0	32	n	ENSMUSG00000052609.10	Plekhg3	chr12	protein_coding	pleckstrin homology domain containing, family G (with RhoGef domain) member 3
known_NIR_4105	chr12	76618416	76618821	+	76618416	76618824	A3SS	ENSMUST00000075249.6	known	0.30	16	37	16	37	y	0.35	8	15	8	15	y	0.33	14	28	14	28	y	0.28	12	31	12	31	y	0.42	21	29	21	29	y	0.36	8	14	8	14	y	0.46	18	21	18	21	y	0.42	18	25	18	25	y	0.47	16	18	16	18	y	0.47	27	31	27	31	y	0.43	16	21	16	21	y	0.47	34	39	34	39	y	ENSMUSG00000052609.10	Plekhg3	chr12	protein_coding	pleckstrin homology domain containing, family G (with RhoGef domain) member 3
known_NIR_4106	chr12	76619519	76620021	+	76619432	76620021	A5SS	ENSMUST00000075249.6	known	0.21	7	27	7	27	y	0.45	10	12	10	12	y	0.58	18	13	18	13	y	0.36	16	28	16	28	y	0.42	17	23	17	23	y	0.52	14	13	14	13	y	0.35	9	17	9	17	y	0.56	14	11	14	11	y	0.48	13	14	13	14	y	0.35	12	22	12	22	y	0.33	11	22	11	22	y	0.43	16	21	16	21	y	ENSMUSG00000052609.10	Plekhg3	chr12	protein_coding	pleckstrin homology domain containing, family G (with RhoGef domain) member 3
known_NIR_4107	chr12	76812412	76822368	+	76812412;76820167	76820032;76822368	ES	ENSMUST00000041262.14	known	0.06	14	212.0	14	245;179	y	0.13	32	208.0	32	243;173	y	0.15	43	246.5	43	272;221	y	0.07	17	218.0	17	249;187	y	0.10	27	244.5	27	263;226	y	0.12	24	175.0	24	196;154	y	0.09	27	280.0	27	277;283	y	0.14	23	141.5	23	152;131	y	0.05	11	203.0	11	229;177	y	0.07	19	263.5	19	299;228	y	0.07	17	226.5	17	230;223	y	0.10	29	255.0	29	282;228	y	ENSMUSG00000090258.8	Churc1	chr12	protein_coding	churchill domain containing 1
known_NIR_4108	chr12	76812412	76822368	+	76820167	76822368	5pMXE	ENSMUST00000152917.2	known	0.07	14	179	14	179	y	0.16	32	173	32	173	y	0.16	43	221	43	221	y	0.08	17	187	17	187	y	0.11	27	226	27	226	y	0.13	24	154	24	154	y	0.09	27	283	27	283	y	0.15	23	131	23	131	y	0.06	11	177	11	177	y	0.08	19	228	19	228	y	0.07	17	223	17	223	y	0.11	29	228	29	228	y	ENSMUSG00000090258.8	Churc1	chr12	protein_coding	churchill domain containing 1
known_NIR_4109	chr12	76812412;76820167	76820032;76829587	+	76812412;76822438	76822368;76829587	MXE	ENSMUST00000126408.2	known	0.54	122.5	104.5	245;0	14;195	n	0.51	122.0	115.5	243;1	32;199	n	0.51	138.0	132.0	272;4	43;221	y	0.53	126.0	114.0	249;3	17;211	y	0.47	134.0	152.5	263;5	27;278	y	0.50	98.5	99.5	196;1	24;175	n	0.48	141.0	155.0	277;5	27;283	y	0.47	78.0	86.5	152;4	23;150	y	0.57	116.5	86.5	229;4	11;162	y	0.51	149.5	143.0	299;0	19;267	n	0.44	115.0	146.0	230;0	17;275	n	0.50	143.5	142.5	282;5	29;256	y	ENSMUSG00000090258.8	Churc1	chr12	protein_coding	churchill domain containing 1
known_NIR_4110	chr12	76820167	76829587	+	76820167	76822368	3pMXE	ENSMUST00000152917.2	known	0.00	0	179	0	179	n	0.01	1	173	1	173	n	0.02	4	221	4	221	y	0.02	3	187	3	187	y	0.02	5	226	5	226	y	0.01	1	154	1	154	n	0.02	5	283	5	283	y	0.03	4	131	4	131	y	0.02	4	177	4	177	y	0.00	0	228	0	228	n	0.00	0	223	0	223	n	0.02	5	228	5	228	y	ENSMUSG00000090258.8	Churc1	chr12	protein_coding	churchill domain containing 1
known_NIR_4111	chr12	76820167	76829587	+	76820167;76822438	76822368;76829587	ES	ENSMUST00000041262.14	known	0.00	0	187.0	0	179;195	n	0.01	1	186.0	1	173;199	n	0.02	4	221.0	4	221;221	y	0.01	3	199.0	3	187;211	y	0.02	5	252.0	5	226;278	y	0.01	1	164.5	1	154;175	n	0.02	5	283.0	5	283;283	y	0.03	4	140.5	4	131;150	y	0.02	4	169.5	4	177;162	y	0.00	0	247.5	0	228;267	n	0.00	0	249.0	0	223;275	n	0.02	5	242.0	5	228;256	y	ENSMUSG00000090258.8	Churc1	chr12	protein_coding	churchill domain containing 1
known_NIR_4112	chr12	76985529;76986288	76986204;76986741	-	76985529	76986741	cassetteExon	ENSMUST00000110395.11	known	0.10	5.5	50	2;9	50	y	0.08	3.5	43	2;5	43	y	0.06	5.5	84	4;7	84	y	0.12	5.0	35	2;8	35	y	0.11	7.5	63	3;12	63	y	0.07	2.0	26	0;4	26	n	0.06	3.5	60	2;5	60	y	0.07	2.5	35	2;3	35	y	0.17	6.5	31	4;9	31	y	0.11	7.0	57	3;11	57	y	0.17	9.0	45	6;12	45	y	0.07	4.5	58	5;4	58	y	ENSMUSG00000059436.14	Max	chr12	protein_coding	Max protein
known_NIR_4113	chr12	77000050	77008764	-	77000050;77008063	77008037;77008764	ES	ENSMUST00000110395.11	known	0.69	24	11.0	24	12;10	y	0.75	29	9.5	29	9;10	y	0.82	45	10.0	45	9;11	y	0.73	38	14.0	38	13;15	y	0.67	35	17.0	35	20;14	y	0.87	23	3.5	23	4;3	y	0.80	32	8.0	32	7;9	y	0.73	31	11.5	31	11;12	y	0.73	22	8.0	22	7;9	y	0.78	31	8.5	31	10;7	y	0.66	20	10.5	20	10;11	y	0.85	40	7.0	40	8;6	y	ENSMUSG00000059436.14	Max	chr12	protein_coding	Max protein
known_NIR_4114	chr12	78539084;78540831	78540724;78551391	+	78539084	78551391	cassetteExon	ENSMUST00000052472.6	known	0.98	61.5	1	64;59	1	n	1.00	45.5	0	41;50	0	n	1.00	79.0	0	81;77	0	n	1.00	90.5	0	101;80	0	n	0.98	114.5	2	109;120	2	y	0.98	49.5	1	55;44	1	n	1.00	97.5	0	106;89	0	n	1.00	54.0	0	58;50	0	n	0.99	72.0	1	72;72	1	n	0.97	108.5	3	111;106	3	y	1.00	70.0	0	75;65	0	n	1.00	90.0	0	106;74	0	n	ENSMUSG00000047454.13	Gphn	chr12	protein_coding	gephyrin
known_NIR_4115	chr12	78841107	78843877	+	78841107	78843640	A3SS	ENSMUST00000219197.2	known	0.14	1	6	1	6	n	0.00	0	1	0	1	n	0.00	0	11	0	11	n	0.13	2	13	2	13	y	0.25	2	6	2	6	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.20	2	8	2	8	y	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.15	2	11	2	11	y	ENSMUSG00000021112.10	Mpp5	chr12	protein_coding	membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)
known_NIR_4116	chr12	78864545	78865978	+	78864545	78865961	A3SS	ENSMUST00000219197.2	known	1.00	10	0	10	0	n	1.00	6	0	6	0	n	0.88	15	2	15	2	y	1.00	14	0	14	0	n	1.00	20	0	20	0	n	1.00	7	0	7	0	n	0.96	22	1	22	1	n	0.95	18	1	18	1	n	1.00	11	0	11	0	n	1.00	25	0	25	0	n	1.00	8	0	8	0	n	1.00	24	0	24	0	n	ENSMUSG00000021112.10	Mpp5	chr12	protein_coding	membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)
known_NIR_4117	chr12	78908954	78921338	+	78908954;78913541	78913300;78921338	ES	ENSMUST00000071230.8	known	0.02	2	85.5	2	97;74	y	0.00	0	64.0	0	79;49	n	0.00	0	133.0	0	145;121	n	0.01	1	134.0	1	147;121	n	0.00	0	141.0	0	157;125	n	0.00	0	72.0	0	81;63	n	0.00	0	114.5	0	130;99	n	0.02	1	63.0	1	74;52	n	0.00	0	75.5	0	78;73	n	0.01	1	105.0	1	124;86	n	0.00	0	75.5	0	78;73	n	0.00	0	116.0	0	135;97	n	ENSMUSG00000021116.11	Eif2s1	chr12	protein_coding	eukaryotic translation initiation factor 2, subunit 1 alpha
known_NIR_4118	chr12	79132625	79136214	-	79132630	79136214	A3SS	ENSMUST00000072154.9	known	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.20	2	8	2	8	y	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	ENSMUSG00000021120.12	Pigh	chr12	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class H
known_NIR_4119	chr12	79203345	79207183	-	79203345;79204683	79204622;79207183	ES	ENSMUST00000055262.13	known	0.02	4	248.5	4	248;249	y	0.00	0	278.0	0	309;247	n	0.01	4	264.5	4	272;257	y	0.00	0	235.5	0	268;203	n	0.00	0	307.5	0	336;279	n	0.00	0	158.5	0	170;147	n	0.00	1	311.0	1	328;294	n	0.00	0	149.5	0	156;143	n	0.01	2	220.5	2	258;183	y	0.01	2	352.0	2	380;324	y	0.00	0	278.5	0	308;249	n	0.01	2	300.5	2	329;272	y	ENSMUSG00000021124.14	Vti1b	chr12	protein_coding	vesicle transport through interaction with t-SNAREs 1B
known_NIR_4120	chr12	79207356;79208996	79208875;79211722	-	79207356	79211722	cassetteExon	ENSMUST00000055262.13	known	0.00	0.0	219	0;0	219	n	0.01	2.5	212	2;3	212	y	0.01	2.5	268	1;4	268	n	0.00	0.0	225	0;0	225	n	0.01	2.0	286	2;2	286	y	0.00	0.5	131	1;0	131	n	0.00	1.0	315	1;1	315	n	0.01	1.0	140	0;2	140	n	0.00	0.0	201	0;0	201	n	0.01	2.5	331	2;3	331	y	0.00	0.0	288	0;0	288	n	0.01	2.5	306	3;2	306	y	ENSMUSG00000021124.14	Vti1b	chr12	protein_coding	vesicle transport through interaction with t-SNAREs 1B
known_NIR_4121	chr12	79211913	79218994	-	79211913	79213125	5pMXE	ENSMUST00000163031.2	known	0.09	21	221	21	221	y	0.07	21	264	21	264	y	0.05	15	288	15	288	y	0.08	18	214	18	214	y	0.09	28	287	28	287	y	0.04	6	132	6	132	y	0.07	24	312	24	312	y	0.02	4	178	4	178	y	0.09	18	190	18	190	y	0.08	30	342	30	342	y	0.05	13	260	13	260	y	0.05	17	312	17	312	y	ENSMUSG00000021124.14	Vti1b	chr12	protein_coding	vesicle transport through interaction with t-SNAREs 1B
known_NIR_4122	chr12	79211913	79218994	-	79211913;79213183	79213125;79218994	ES	ENSMUST00000055262.13	known	0.10	21	185.5	21	221;150	y	0.09	21	221.0	21	264;178	y	0.06	15	250.0	15	288;212	y	0.08	18	199.0	18	214;184	y	0.10	28	248.5	28	287;210	y	0.05	6	112.0	6	132;92	y	0.08	24	285.0	24	312;258	y	0.03	4	151.5	4	178;125	y	0.10	18	170.0	18	190;150	y	0.10	30	284.0	30	342;226	y	0.05	13	237.0	13	260;214	y	0.06	17	274.0	17	312;236	y	ENSMUSG00000021124.14	Vti1b	chr12	protein_coding	vesicle transport through interaction with t-SNAREs 1B
known_NIR_4123	chr12	79235881	79237543	-	79235881	79238500	A5SS	ENSMUST00000161204.8	known	0.00	0	87	0	87	n	0.00	0	53	0	53	n	0.00	0	112	0	112	n	0.01	1	114	1	114	n	0.00	0	140	0	140	n	0.02	2	84	2	84	y	0.00	0	112	0	112	n	0.00	0	90	0	90	n	0.01	1	110	1	110	n	0.01	1	142	1	142	n	0.02	3	121	3	121	y	0.01	1	147	1	147	n	ENSMUSG00000066441.15	Rdh11	chr12	protein_coding	retinol dehydrogenase 11
known_NIR_4124	chr12	80171900	80173840	-	80171900	80178588	A5SS	ENSMUST00000220125.2	known	0.50	1	1	1	1	n	0.40	2	3	2	3	n	0.47	8	9	8	9	y	0.00	0	2	0	2	n	0.62	5	3	5	3	n	0.57	4	3	4	3	n	0.00	0	9	0	9	n	0.08	1	11	1	11	n	0.50	2	2	2	2	n	0.50	2	2	2	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000097729.3	2310015A10Rik	chr12	lncRNA	RIKEN cDNA 2310015A10 gene
known_NIR_4125	chr12	80178733	80179264	-	80178733	80179501	A5SS	ENSMUST00000219349.2	known	1.00	2	0	2	0	n	0.50	1	1	1	1	n	0.54	7	6	7	6	y	-	-	-	-	-	-	0.60	3	2	3	2	n	0.29	2	5	2	5	n	0.69	9	4	9	4	y	0.36	4	7	4	7	y	0.67	2	1	2	1	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.67	2	1	2	1	n	ENSMUSG00000097729.3	2310015A10Rik	chr12	lncRNA	RIKEN cDNA 2310015A10 gene
known_NIR_4126	chr12	80215790;80217022	80216957;80218503	-	80215790;80217540	80217460;80218503	MXE	ENSMUST00000021554.16	known	0.06	3.5	52.5	7;0	46;59	n	0.08	5.0	60.5	4;6	63;58	y	0.04	2.0	54.5	1;3	55;54	n	0.10	6.0	51.5	12;0	45;58	n	0.12	7.5	54.0	6;9	43;65	y	0.14	4.5	27.5	9;0	21;34	n	0.10	6.0	51.5	6;6	54;49	y	0.11	4.0	31.0	4;4	25;37	y	0.05	1.5	30.0	2;1	24;36	n	0.00	0.0	69.0	0;0	63;75	n	0.08	4.5	48.5	6;3	42;55	y	0.06	4.5	74.5	4;5	69;80	y	ENSMUSG00000015143.16	Actn1	chr12	protein_coding	actinin, alpha 1
known_NIR_4127	chr12	8027860	8029253	+	8027860	8028213	A3SS&ES	ENSMUST00000171271.8	known	0.00	0	68	0	68	n	0.00	0	44	0	44	n	0.01	2	197	2	197	y	0.00	0	182	0	182	n	0.00	0	134	0	134	n	0.00	0	171	0	171	n	0.00	0	150	0	150	n	0.00	0	257	0	257	n	0.00	0	83	0	83	n	0.00	0	75	0	75	n	0.00	0	95	0	95	n	0.00	0	124	0	124	n	ENSMUSG00000020609.15	Apob	chr12	protein_coding	apolipoprotein B
known_NIR_4128	chr12	8027860	8029253	+	8027860;8028251	8028213;8029253	ES	ENSMUST00000037811.13	known	0.00	0	67.0	0	68;66	n	0.00	0	48.5	0	44;53	n	0.01	2	206.0	2	197;215	y	0.00	0	188.5	0	182;195	n	0.00	0	145.5	0	134;157	n	0.00	0	181.5	0	171;192	n	0.00	0	163.0	0	150;176	n	0.00	0	269.0	0	257;281	n	0.00	0	87.0	0	83;91	n	0.00	0	88.0	0	75;101	n	0.00	0	98.0	0	95;101	n	0.00	0	133.5	0	124;143	n	ENSMUSG00000020609.15	Apob	chr12	protein_coding	apolipoprotein B
known_NIR_4129	chr12	8028251	8029253	+	8028251	8029256	A3SS	ENSMUST00000171271.8	known	1.00	66	0	66	0	n	0.96	53	2	53	2	y	1.00	215	0	215	0	n	0.99	195	2	195	2	y	0.99	157	1	157	1	n	0.98	192	3	192	3	y	1.00	176	0	176	0	n	0.99	281	2	281	2	y	1.00	91	0	91	0	n	0.99	101	1	101	1	n	1.00	101	0	101	0	n	1.00	143	0	143	0	n	ENSMUSG00000020609.15	Apob	chr12	protein_coding	apolipoprotein B
known_NIR_4130	chr12	80451472	80483138	-	80451472	80482959	A5SS	ENSMUST00000054145.8	known	0.00	0	26	0	26	n	0.06	1	16	1	16	n	0.18	9	41	9	41	y	0.11	3	24	3	24	y	0.16	7	36	7	36	y	0.19	5	21	5	21	y	0.06	2	29	2	29	y	0.20	8	33	8	33	y	0.12	2	14	2	14	y	0.08	3	33	3	33	y	0.12	3	21	3	21	y	0.06	2	33	2	33	y	ENSMUSG00000049106.8	Dcaf5	chr12	protein_coding	DDB1 and CUL4 associated factor 5
known_NIR_4131	chr12	80537661	80537871	+	80537661	80537869	A3SS	ENSMUST00000038185.10	known	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	24	0	24	n	0.00	0	25	0	25	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.00	0	21	0	21	n	0.00	0	9	0	9	n	0.14	3	18	3	18	y	ENSMUSG00000032705.10	Exd2	chr12	protein_coding	exonuclease 3'-5' domain containing 2
known_NIR_4132	chr12	80687818;80689619	80689563;80690538	-	80687818	80690538	cassetteExon	ENSMUST00000021559.14	known	0.07	8.5	119	12;5	119	y	0.10	13.0	114	17;9	114	y	0.17	27.5	137	37;18	137	y	0.06	7.5	114	9;6	114	y	0.10	14.0	133	13;15	133	y	0.11	10.0	81	9;11	81	y	0.12	15.5	112	22;9	112	y	0.13	14.5	100	20;9	100	y	0.06	6.0	92	7;5	92	y	0.06	11.0	161	13;9	161	y	0.13	18.5	122	25;12	122	y	0.14	18.0	114	21;15	114	y	ENSMUSG00000021131.15	Erh	chr12	protein_coding	ERH mRNA splicing and mitosis factor
known_NIR_4133	chr12	80691190	80709244	+	80691750	80709244	A5SS	ENSMUST00000219706.2	known	0.09	3	32	3	32	y	0.10	2	18	2	18	y	0.00	0	63	0	63	n	0.03	1	34	1	34	n	0.02	1	47	1	47	n	0.00	0	35	0	35	n	0.07	3	41	3	41	y	0.07	3	38	3	38	y	0.00	0	23	0	23	n	0.00	0	38	0	38	n	0.00	0	25	0	25	n	0.00	0	39	0	39	n	ENSMUSG00000048833.10	Slc39a9	chr12	protein_coding	solute carrier family 39 (zinc transporter), member 9
known_NIR_4134	chr12	80691190;80691750	80691380;80709244	+	80691190	80709244	cassetteExon	ENSMUST00000219405.2	known	0.84	16.0	3	0;32	3	n	0.82	9.0	2	0;18	2	n	1.00	33.5	0	4;63	0	n	0.95	18.0	1	2;34	1	n	0.96	24.0	1	1;47	1	n	1.00	18.0	0	1;35	0	n	0.88	21.0	3	1;41	3	n	0.87	20.0	3	2;38	3	y	1.00	12.5	0	2;23	0	n	1.00	19.0	0	0;38	0	n	1.00	12.5	0	0;25	0	n	1.00	20.0	0	1;39	0	n	ENSMUSG00000048833.10	Slc39a9	chr12	protein_coding	solute carrier family 39 (zinc transporter), member 9
known_NIR_4135	chr12	80720068	80723906	+	80720068;80722708	80722623;80723906	ES	ENSMUST00000085245.7	known	0.16	8	43.0	8	35;51	y	0.04	1	24.5	1	27;22	n	0.08	6	69.0	6	68;70	y	0.02	1	47.5	1	54;41	n	0.00	0	54.5	0	65;44	n	0.00	0	41.0	0	41;41	n	0.00	0	41.5	0	53;30	n	0.00	0	40.0	0	45;35	n	0.07	2	28.0	2	30;26	y	0.07	5	68.5	5	75;62	y	0.11	5	39.0	5	42;36	y	0.08	4	45.5	4	57;34	y	ENSMUSG00000048833.10	Slc39a9	chr12	protein_coding	solute carrier family 39 (zinc transporter), member 9
known_NIR_4136	chr12	80875017	80915201	+	80875017;80898050	80897988;80915201	ES	ENSMUST00000220238.2	known	0.70	27	11.5	27	10;13	y	0.88	23	3.0	23	2;4	y	0.68	99	46.5	99	45;48	y	0.55	27	22.5	27	21;24	y	0.66	77	39.0	77	30;48	y	0.68	53	25.0	53	26;24	y	0.67	59	28.5	59	23;34	y	0.68	59	27.5	59	27;28	y	0.87	27	4.0	27	2;6	y	0.64	27	15.0	27	17;13	y	0.74	10	3.5	10	4;3	y	0.56	34	26.5	34	31;22	y	ENSMUSG00000021133.10	Susd6	chr12	protein_coding	sushi domain containing 6
known_NIR_4137	chr12	80992442	80993350	+	80992446	80993350	A5SS	ENSMUST00000094693.11	known	0.15	64	371	64	371	y	0.21	84	321	84	321	y	0.16	87	471	87	471	y	0.15	71	400	71	400	y	0.18	152	686	152	686	y	0.15	51	295	51	295	y	0.16	108	570	108	570	y	0.16	60	312	60	312	y	0.15	85	465	85	465	y	0.15	109	599	109	599	y	0.14	73	443	73	443	y	0.14	120	726	120	726	y	ENSMUSG00000021134.18	Srsf5	chr12	protein_coding	serine and arginine-rich splicing factor 5
known_NIR_4138	chr12	80992572	80993350	+	80992442	80993350	A5SS	ENSMUST00000110352.10	known	0.61	100	64	100	64	y	0.48	78	84	78	84	y	0.61	137	87	137	87	y	0.66	137	71	137	71	y	0.61	237	152	237	152	y	0.67	102	51	102	51	y	0.63	186	108	186	108	y	0.65	111	60	111	60	y	0.65	155	85	155	85	y	0.67	219	109	219	109	y	0.67	151	73	151	73	y	0.60	180	120	180	120	y	ENSMUSG00000021134.18	Srsf5	chr12	protein_coding	serine and arginine-rich splicing factor 5
known_NIR_4139	chr12	80992572	80993350	+	80992446	80993350	A5SS	ENSMUST00000094693.11	known	0.21	100	371	100	371	y	0.20	78	321	78	321	y	0.23	137	471	137	471	y	0.26	137	400	137	400	y	0.26	237	686	237	686	y	0.26	102	295	102	295	y	0.25	186	570	186	570	y	0.26	111	312	111	312	y	0.25	155	465	155	465	y	0.27	219	599	219	599	y	0.25	151	443	151	443	y	0.20	180	726	180	726	y	ENSMUSG00000021134.18	Srsf5	chr12	protein_coding	serine and arginine-rich splicing factor 5
known_NIR_4140	chr12	80993494	80993890	+	80993494	80994085	A3SS	ENSMUST00000094693.11	known	0.01	4	604	4	604	y	0.00	0	507	0	507	n	0.00	0	614	0	614	n	0.00	0	640	0	640	n	0.00	2	1141	2	1141	y	0.00	0	468	0	468	n	0.00	0	898	0	898	n	0.00	0	467	0	467	n	0.00	0	755	0	755	n	0.00	4	927	4	927	y	0.00	0	673	0	673	n	0.00	0	1021	0	1021	n	ENSMUSG00000021134.18	Srsf5	chr12	protein_coding	serine and arginine-rich splicing factor 5
known_NIR_4141	chr12	80994639	80994903	+	80994639	80995869	A3SS	ENSMUST00000094693.11	known	0.27	79	215	79	215	y	0.15	30	166	30	166	y	0.43	134	180	134	180	y	0.17	48	229	48	229	y	0.19	100	427	100	427	y	0.19	35	145	35	145	y	0.12	62	454	62	454	y	0.25	49	144	49	144	y	0.09	31	306	31	306	y	0.29	159	392	159	392	y	0.11	38	311	38	311	y	0.24	145	455	145	455	y	ENSMUSG00000021134.18	Srsf5	chr12	protein_coding	serine and arginine-rich splicing factor 5
known_NIR_4142	chr12	80996378	80996491	+	80996378	80996494	A3SS	ENSMUST00000094693.11	known	0.18	117	522	117	522	y	0.21	141	536	141	536	y	0.22	139	479	139	479	y	0.20	121	471	121	471	y	0.18	186	833	186	833	y	0.21	95	363	95	363	y	0.17	171	853	171	853	y	0.18	85	381	85	381	y	0.17	123	614	123	614	y	0.16	155	811	155	811	y	0.19	151	655	151	655	y	0.16	159	825	159	825	y	ENSMUSG00000021134.18	Srsf5	chr12	protein_coding	serine and arginine-rich splicing factor 5
known_NIR_4143	chr12	81184786	81197426	+	81184786	81197393	A3SS	ENSMUST00000110347.9	known	0.89	125	16	125	16	y	0.94	136	8	136	8	y	0.89	240	31	240	31	y	0.89	143	17	143	17	y	0.85	194	33	194	33	y	0.82	107	23	107	23	y	0.87	168	25	168	25	y	0.83	115	23	115	23	y	0.89	105	13	105	13	y	0.90	169	19	169	19	y	0.88	100	13	100	13	y	0.88	128	17	128	17	y	ENSMUSG00000021136.14	Smoc1	chr12	protein_coding	SPARC related  modular calcium binding 1
known_NIR_4144	chr12	81406118;81421281	81421192;81521361	-	81406118	81521361	cassetteExon	ENSMUST00000164386.8	known	0.00	0.5	108	1;0	108	n	0.03	4.5	127	7;2	127	y	0.01	1.0	75	0;2	75	n	0.01	1.0	105	1;1	105	n	0.01	0.5	96	1;0	96	n	0.02	1.0	60	1;1	60	n	0.01	2.5	184	3;2	184	y	0.01	0.5	62	1;0	62	n	0.01	1.0	91	2;0	91	n	0.01	3.0	199	2;4	199	y	0.01	1.5	124	3;0	124	n	0.01	1.5	137	2;1	137	n	ENSMUSG00000021139.18	Gm20498	chr12	protein_coding	predicted gene 20498
known_NIR_4145	chr12	81421281	81521361	-	81519125	81521361	3pMXE	ENSMUST00000166664.2	known	0.00	0	140	0	140	n	0.02	2	129	2	129	y	0.01	2	177	2	177	y	0.01	1	123	1	123	n	0.00	0	153	0	153	n	0.01	1	107	1	107	n	0.01	2	159	2	159	y	0.00	0	103	0	103	n	0.00	0	108	0	108	n	0.03	4	127	4	127	y	0.00	0	125	0	125	n	0.01	1	140	1	140	n	ENSMUSG00000021139.18	Gm20498	chr12	protein_coding	predicted gene 20498
known_NIR_4146	chr12	81518945	81521361	-	81406118	81521361	A3SS	ENSMUST00000164386.8	known	0.22	31	108	31	108	y	0.18	28	127	28	127	y	0.31	33	75	33	75	y	0.14	17	105	17	105	y	0.17	20	96	20	96	y	0.17	12	60	12	60	y	0.14	31	184	31	184	y	0.26	22	62	22	62	y	0.22	26	91	26	91	y	0.15	35	199	35	199	y	0.19	29	124	29	124	y	0.18	30	137	30	137	y	ENSMUSG00000021139.18	Gm20498	chr12	protein_coding	predicted gene 20498
known_NIR_4147	chr12	81518945	81521361	-	81421281	81521361	A3SS	ENSMUST00000166723.8	known	1.00	31	0	31	0	n	0.93	28	2	28	2	y	0.94	33	2	33	2	y	0.94	17	1	17	1	n	1.00	20	0	20	0	n	0.92	12	1	12	1	n	0.94	31	2	31	2	y	1.00	22	0	22	0	n	1.00	26	0	26	0	n	0.90	35	4	35	4	y	1.00	29	0	29	0	n	0.97	30	1	30	1	n	ENSMUSG00000091803.8	Cox16	chr12	protein_coding	cytochrome c oxidase assembly protein 16
known_NIR_4148	chr12	81518945	81521361	-	81519125	81521361	A3SS	ENSMUST00000166664.2	known	0.18	31	140	31	140	y	0.18	28	129	28	129	y	0.16	33	177	33	177	y	0.12	17	123	17	123	y	0.12	20	153	20	153	y	0.10	12	107	12	107	y	0.16	31	159	31	159	y	0.18	22	103	22	103	y	0.19	26	108	26	108	y	0.22	35	127	35	127	y	0.19	29	125	29	125	y	0.18	30	140	30	140	y	ENSMUSG00000021139.18	Gm20498	chr12	protein_coding	predicted gene 20498
known_NIR_4149	chr12	81519125	81521361	-	81406118	81521361	A3SS	ENSMUST00000164386.8	known	0.56	140	108	140	108	y	0.50	129	127	129	127	y	0.70	177	75	177	75	y	0.54	123	105	123	105	y	0.61	153	96	153	96	y	0.64	107	60	107	60	y	0.46	159	184	159	184	y	0.62	103	62	103	62	y	0.54	108	91	108	91	y	0.39	127	199	127	199	y	0.50	125	124	125	124	y	0.51	140	137	140	137	y	ENSMUSG00000021139.18	Gm20498	chr12	protein_coding	predicted gene 20498
known_NIR_4150	chr12	81527776	81531540	-	81527776	81531671	A5SS	ENSMUST00000110340.9	known	0.03	8	270	8	270	y	0.03	8	286	8	286	y	0.02	5	328	5	328	y	0.02	6	282	6	282	y	0.02	5	310	5	310	y	0.01	2	189	2	189	y	0.03	11	352	11	352	y	0.05	9	167	9	167	y	0.05	11	226	11	226	y	0.03	15	416	15	416	y	0.02	7	326	7	326	y	0.03	8	303	8	303	y	ENSMUSG00000091803.8	Cox16	chr12	protein_coding	cytochrome c oxidase assembly protein 16
known_NIR_4151	chr12	81527776	81531540	-	81527776	81551318	A5SS	ENSMUST00000164386.8	known	0.47	8	9	8	9	y	0.47	8	9	8	9	y	0.23	5	17	5	17	y	0.30	6	14	6	14	y	0.18	5	23	5	23	y	0.33	2	4	2	4	n	0.28	11	29	11	29	y	0.53	9	8	9	8	y	0.32	11	23	11	23	y	0.54	15	13	15	13	y	0.37	7	12	7	12	y	0.38	8	13	8	13	y	ENSMUSG00000021139.18	Gm20498	chr12	protein_coding	predicted gene 20498
known_NIR_4152	chr12	81527776	81531671	-	81527776	81551318	A5SS	ENSMUST00000164386.8	known	0.97	270	9	270	9	y	0.97	286	9	286	9	y	0.95	328	17	328	17	y	0.95	282	14	282	14	y	0.93	310	23	310	23	y	0.98	189	4	189	4	y	0.92	352	29	352	29	y	0.95	167	8	167	8	y	0.91	226	23	226	23	y	0.97	416	13	416	13	y	0.96	326	12	326	12	y	0.96	303	13	303	13	y	ENSMUSG00000021139.18	Gm20498	chr12	protein_coding	predicted gene 20498
known_NIR_4153	chr12	81548940	81551318	-	81527776	81551318	A3SS	ENSMUST00000164386.8	known	0.95	157	9	157	9	y	0.93	115	9	115	9	y	0.90	161	17	161	17	y	0.94	217	14	217	14	y	0.90	215	23	215	23	y	0.96	107	4	107	4	y	0.87	196	29	196	29	y	0.94	122	8	122	8	y	0.82	107	23	107	23	y	0.95	225	13	225	13	y	0.93	151	12	151	12	y	0.95	250	13	250	13	y	ENSMUSG00000021139.18	Gm20498	chr12	protein_coding	predicted gene 20498
known_NIR_4154	chr12	81548940	81551318	-	81536018	81551318	A3SS	ENSMUST00000110339.5	known	1.00	157	0	157	0	n	1.00	115	0	115	0	n	0.99	161	2	161	2	y	1.00	217	0	217	0	n	1.00	215	0	215	0	n	1.00	107	0	107	0	n	1.00	196	0	196	0	n	1.00	122	0	122	0	n	1.00	107	0	107	0	n	1.00	225	0	225	0	n	1.00	151	0	151	0	n	1.00	250	0	250	0	n	ENSMUSG00000021139.18	Gm20498	chr12	protein_coding	predicted gene 20498
known_NIR_4155	chr12	81551413	81579139	-	81551413	81557603	A5SS&ES	ENSMUST00000164386.8	known	0.00	0	126	0	126	n	0.00	0	97	0	97	n	0.02	3	126	3	126	y	0.00	0	164	0	164	n	0.00	0	173	0	173	n	0.00	0	78	0	78	n	0.00	0	139	0	139	n	0.00	0	101	0	101	n	0.00	0	88	0	88	n	0.01	1	165	1	165	n	0.00	0	123	0	123	n	0.01	1	153	1	153	n	ENSMUSG00000021139.18	Gm20498	chr12	protein_coding	predicted gene 20498
known_NIR_4156	chr12	81551413	81579139	-	81551413	81579490	A5SS	ENSMUST00000171459.8	known	0.00	0	18	0	18	n	0.00	0	23	0	23	n	0.09	3	30	3	30	y	0.00	0	28	0	28	n	0.00	0	36	0	36	n	0.00	0	16	0	16	n	0.00	0	29	0	29	n	0.00	0	17	0	17	n	0.00	0	25	0	25	n	0.03	1	37	1	37	n	0.00	0	23	0	23	n	0.03	1	39	1	39	n	ENSMUSG00000021139.18	Gm20498	chr12	protein_coding	predicted gene 20498
known_NIR_4157	chr12	81551413	81579490	-	81551413	81557603	A5SS&ES	ENSMUST00000170958.8	known	0.12	18	126	18	126	y	0.19	23	97	23	97	y	0.19	30	126	30	126	y	0.15	28	164	28	164	y	0.17	36	173	36	173	y	0.17	16	78	16	78	y	0.17	29	139	29	139	y	0.14	17	101	17	101	y	0.22	25	88	25	88	y	0.18	37	165	37	165	y	0.16	23	123	23	123	y	0.20	39	153	39	153	y	ENSMUSG00000021139.18	Gm20498	chr12	protein_coding	predicted gene 20498
known_NIR_4158	chr12	81551413	81579490	-	81551413;81557739	81557603;81579490	ES	ENSMUST00000164386.8	known	0.13	18	124.5	18	126;123	y	0.22	23	81.5	23	97;66	y	0.19	30	131.0	30	126;136	y	0.15	28	161.5	28	164;159	y	0.19	36	152.5	36	173;132	y	0.17	16	79.0	16	78;80	y	0.18	29	136.5	29	139;134	y	0.16	17	92.0	17	101;83	y	0.21	25	91.5	25	88;95	y	0.18	37	163.5	37	165;162	y	0.16	23	122.0	23	123;121	y	0.21	39	149.5	39	153;146	y	ENSMUSG00000021139.18	Gm20498	chr12	protein_coding	predicted gene 20498
known_NIR_4159	chr12	81557739	81579139	-	81557739	81579490	A5SS	ENSMUST00000164386.8	known	0.00	0	123	0	123	n	0.04	3	66	3	66	y	0.01	1	136	1	136	n	0.02	4	159	4	159	y	0.00	0	132	0	132	n	0.02	2	80	2	80	y	0.00	0	134	0	134	n	0.01	1	83	1	83	n	0.00	0	95	0	95	n	0.01	1	162	1	162	n	0.00	0	121	0	121	n	0.00	0	146	0	146	n	ENSMUSG00000021139.18	Gm20498	chr12	protein_coding	predicted gene 20498
known_NIR_4160	chr12	81621326	81628575	-	81621326;81626459	81626344;81628575	ES	ENSMUST00000161211.8	known	0.05	3	56.0	3	34;78	y	0.02	1	51.0	1	39;63	n	0.00	0	54.5	0	46;63	n	0.00	0	49.5	0	43;56	n	0.04	2	55.0	2	37;73	y	0.00	0	22.5	0	21;24	n	0.00	0	66.0	0	44;88	n	0.00	0	30.0	0	26;34	n	0.07	3	40.0	3	28;52	y	0.00	0	54.5	0	50;59	n	0.00	0	33.5	0	24;43	n	0.02	1	53.0	1	43;63	n	ENSMUSG00000002679.15	Med6	chr12	protein_coding	mediator complex subunit 6
known_NIR_4161	chr12	81621326	81628575	-	81626459	81628575	3pMXE	ENSMUST00000161902.2	known	0.04	3	78	3	78	y	0.02	1	63	1	63	n	0.00	0	63	0	63	n	0.00	0	56	0	56	n	0.03	2	73	2	73	y	0.00	0	24	0	24	n	0.00	0	88	0	88	n	0.00	0	34	0	34	n	0.05	3	52	3	52	y	0.00	0	59	0	59	n	0.00	0	43	0	43	n	0.02	1	63	1	63	n	ENSMUSG00000002679.15	Med6	chr12	protein_coding	mediator complex subunit 6
known_NIR_4162	chr12	81638187	81640655	-	81638187	81641714	A5SS	ENSMUST00000161211.8	known	0.00	0	33	0	33	n	0.05	1	18	1	18	n	0.00	0	36	0	36	n	0.11	4	31	4	31	y	0.04	1	23	1	23	n	0.00	0	19	0	19	n	0.06	2	31	2	31	y	0.00	0	8	0	8	n	0.05	2	35	2	35	y	0.14	5	31	5	31	y	0.07	2	27	2	27	y	0.05	2	37	2	37	y	ENSMUSG00000002679.15	Med6	chr12	protein_coding	mediator complex subunit 6
known_NIR_4163	chr12	81980489	81993705	+	81966154	81993705	A5SS	ENSMUST00000221675.2	known	0.00	0	14	0	14	n	0.00	0	4	0	4	n	0.17	5	24	5	24	y	0.33	3	6	3	6	n	0.13	4	26	4	26	y	0.14	3	18	3	18	y	0.11	2	17	2	17	y	0.20	3	12	3	12	y	0.27	4	11	4	11	y	0.11	3	25	3	25	y	0.10	1	9	1	9	n	0.56	9	7	9	7	y	ENSMUSG00000021140.10	Pcnx	chr12	protein_coding	pecanex homolog
known_NIR_4164	chr12	81995189	81996875	+	81995189	81996890	A3SS	ENSMUST00000221721.2	known	0.21	4	15	4	15	y	0.20	1	4	1	4	n	0.09	2	20	2	20	y	0.18	2	9	2	9	y	0.12	3	22	3	22	y	0.00	0	14	0	14	n	0.21	5	19	5	19	y	0.19	3	13	3	13	y	0.19	3	13	3	13	y	0.00	0	21	0	21	n	0.00	0	14	0	14	n	0.17	3	15	3	15	y	ENSMUSG00000021140.10	Pcnx	chr12	protein_coding	pecanex homolog
known_NIR_4165	chr12	82281302;82312799	82312731;82358123	+	82281302	82358123	cassetteExon	ENSMUST00000166429.9	known	0.67	2.0	1	2;2	1	n	0.67	4.0	2	4;4	2	y	0.38	5.5	9	7;4	9	y	0.54	3.5	3	3;4	3	y	0.29	4.5	11	5;4	11	y	0.19	2.5	11	4;1	11	n	0.38	5.5	9	3;8	9	y	0.23	3.5	12	0;7	12	n	0.17	1.0	5	0;2	5	n	0.35	6.5	12	2;11	12	y	0.56	2.5	2	3;2	2	n	0.53	4.5	4	3;6	4	y	ENSMUSG00000042700.17	Sipa1l1	chr12	protein_coding	signal-induced proliferation-associated 1 like 1
known_NIR_4166	chr12	8258204	8270600	+	8258192	8270600	A5SS	ENSMUST00000037383.13	known	0.71	41	17	41	17	y	0.57	16	12	16	12	y	0.65	45	24	45	24	y	0.73	49	18	49	18	y	0.77	54	16	54	16	y	0.73	19	7	19	7	y	0.62	40	25	40	25	y	0.75	24	8	24	8	y	0.68	25	12	25	12	y	0.78	71	20	71	20	y	0.80	36	9	36	9	y	0.61	43	27	43	27	y	ENSMUSG00000037669.16	Ldah	chr12	protein_coding	lipid droplet associated hydrolase
known_NIR_4167	chr12	8258382	8270600	+	8258192	8270600	A5SS	ENSMUST00000037383.13	known	0.06	1	17	1	17	n	0.00	0	12	0	12	n	0.11	3	24	3	24	y	0.14	3	18	3	18	y	0.06	1	16	1	16	n	0.12	1	7	1	7	n	0.11	3	25	3	25	y	0.27	3	8	3	8	y	0.08	1	12	1	12	n	0.00	0	20	0	20	n	0.10	1	9	1	9	n	0.00	0	27	0	27	n	ENSMUSG00000037669.16	Ldah	chr12	protein_coding	lipid droplet associated hydrolase
known_NIR_4168	chr12	8258382	8270600	+	8258204	8270600	A5SS	ENSMUST00000218305.2	known	0.02	1	41	1	41	n	0.00	0	16	0	16	n	0.06	3	45	3	45	y	0.06	3	49	3	49	y	0.02	1	54	1	54	n	0.05	1	19	1	19	n	0.07	3	40	3	40	y	0.11	3	24	3	24	y	0.04	1	25	1	25	n	0.00	0	71	0	71	n	0.03	1	36	1	36	n	0.00	0	43	0	43	n	ENSMUSG00000037669.16	Ldah	chr12	protein_coding	lipid droplet associated hydrolase
known_NIR_4169	chr12	8270755	8288443	+	8270755	8277220	3pMXE	ENSMUST00000217763.2	known	0.19	16	67	16	67	y	0.04	2	49	2	49	y	0.10	9	84	9	84	y	0.06	9	140	9	140	y	0.07	8	103	8	103	y	0.00	0	35	0	35	n	0.10	9	80	9	80	y	0.07	5	66	5	66	y	0.09	7	74	7	74	y	0.05	6	124	6	124	y	0.09	6	64	6	64	y	0.12	14	100	14	100	y	ENSMUSG00000037669.16	Ldah	chr12	protein_coding	lipid droplet associated hydrolase
known_NIR_4170	chr12	8270755	8288443	+	8270755;8277363	8277220;8288443	ES	ENSMUST00000037383.13	known	0.21	16	59.0	16	67;51	y	0.04	2	44.0	2	49;39	y	0.11	9	76.0	9	84;68	y	0.07	9	123.0	9	140;106	y	0.08	8	94.5	8	103;86	y	0.00	0	36.5	0	35;38	n	0.10	9	79.5	9	80;79	y	0.08	5	58.0	5	66;50	y	0.10	7	62.0	7	74;50	y	0.06	6	103.0	6	124;82	y	0.09	6	58.0	6	64;52	y	0.13	14	97.0	14	100;94	y	ENSMUSG00000037669.16	Ldah	chr12	protein_coding	lipid droplet associated hydrolase
known_NIR_4171	chr12	8270755	8318364	+	8270755	8277220	3pMXE	ENSMUST00000217763.2	known	0.03	2	67	2	67	y	0.06	3	49	3	49	y	0.05	4	84	4	84	y	0.01	1	140	1	140	n	0.03	3	103	3	103	y	0.03	1	35	1	35	n	0.04	3	80	3	80	y	0.06	4	66	4	66	y	0.04	3	74	3	74	y	0.05	7	124	7	124	y	0.02	1	64	1	64	n	0.08	9	100	9	100	y	ENSMUSG00000037669.16	Ldah	chr12	protein_coding	lipid droplet associated hydrolase
known_NIR_4172	chr12	8270755;8277363	8277220;8318364	+	8270755	8318364	cassetteExon	ENSMUST00000218305.2	known	0.94	33.5	2	67;0	2	n	0.89	24.5	3	49;0	3	n	0.92	43.5	4	84;3	4	y	0.99	70.5	1	140;1	1	n	0.95	52.0	3	103;1	3	n	0.95	17.5	1	35;0	1	n	0.93	40.0	3	80;0	3	n	0.89	33.0	4	66;0	4	n	0.93	37.0	3	74;0	3	n	0.90	62.0	7	124;0	7	n	0.97	33.0	1	64;2	1	n	0.85	50.0	9	100;0	9	n	ENSMUSG00000037669.16	Ldah	chr12	protein_coding	lipid droplet associated hydrolase
known_NIR_4173	chr12	8270755;8288615	8288443;8318364	+	8270755	8318364	cassetteExon	ENSMUST00000218305.2	known	0.96	45.0	2	16;74	2	y	0.90	28.0	3	2;54	3	y	0.93	54.0	4	9;99	4	y	0.98	61.5	1	9;114	1	n	0.96	64.0	3	8;120	3	y	0.94	16.5	1	0;33	1	n	0.95	52.5	3	9;96	3	y	0.89	33.5	4	5;62	4	y	0.93	40.5	3	7;74	3	y	0.89	55.5	7	6;105	7	y	0.97	37.0	1	6;68	1	n	0.90	78.0	9	14;142	9	y	ENSMUSG00000037669.16	Ldah	chr12	protein_coding	lipid droplet associated hydrolase
known_NIR_4174	chr12	8270755;8288615	8288443;8318364	+	8270755;8277363	8277220;8318364	MXE	ENSMUST00000219043.2	known	0.57	45.0	33.5	16;74	67;0	n	0.53	28.0	24.5	2;54	49;0	n	0.55	54.0	43.5	9;99	84;3	y	0.47	61.5	70.5	9;114	140;1	n	0.55	64.0	52.0	8;120	103;1	n	0.49	16.5	17.5	0;33	35;0	n	0.57	52.5	40.0	9;96	80;0	n	0.50	33.5	33.0	5;62	66;0	n	0.52	40.5	37.0	7;74	74;0	n	0.47	55.5	62.0	6;105	124;0	n	0.53	37.0	33.0	6;68	64;2	y	0.61	78.0	50.0	14;142	100;0	n	ENSMUSG00000037669.16	Ldah	chr12	protein_coding	lipid droplet associated hydrolase
known_NIR_4175	chr12	8277363	8318364	+	8277363	8288443	3pMXE	ENSMUST00000220274.2	known	0.00	0	51	0	51	n	0.00	0	39	0	39	n	0.04	3	68	3	68	y	0.01	1	106	1	106	n	0.01	1	86	1	86	n	0.00	0	38	0	38	n	0.00	0	79	0	79	n	0.00	0	50	0	50	n	0.00	0	50	0	50	n	0.00	0	82	0	82	n	0.04	2	52	2	52	y	0.00	0	94	0	94	n	ENSMUSG00000037669.16	Ldah	chr12	protein_coding	lipid droplet associated hydrolase
known_NIR_4176	chr12	8277363	8318364	+	8277363;8288615	8288443;8318364	ES	ENSMUST00000037383.13	known	0.00	0	62.5	0	51;74	n	0.00	0	46.5	0	39;54	n	0.03	3	83.5	3	68;99	y	0.01	1	110.0	1	106;114	n	0.01	1	103.0	1	86;120	n	0.00	0	35.5	0	38;33	n	0.00	0	87.5	0	79;96	n	0.00	0	56.0	0	50;62	n	0.00	0	62.0	0	50;74	n	0.00	0	93.5	0	82;105	n	0.03	2	60.0	2	52;68	y	0.00	0	118.0	0	94;142	n	ENSMUSG00000037669.16	Ldah	chr12	protein_coding	lipid droplet associated hydrolase
known_NIR_4177	chr12	8318598	8333900	+	8318598	8325808	3pMXE	ENSMUST00000218883.2	known	0.00	0	131	0	131	n	0.03	3	93	3	93	y	0.00	0	130	0	130	n	0.00	0	158	0	158	n	0.00	0	156	0	156	n	0.00	0	49	0	49	n	0.01	1	124	1	124	n	0.00	0	63	0	63	n	0.00	0	92	0	92	n	0.00	0	183	0	183	n	0.00	0	88	0	88	n	0.00	0	171	0	171	n	ENSMUSG00000037669.16	Ldah	chr12	protein_coding	lipid droplet associated hydrolase
known_NIR_4178	chr12	8318598	8333900	+	8318598;8325890	8325808;8333900	ES	ENSMUST00000037383.13	known	0.00	0	102.5	0	131;74	n	0.04	3	69.0	3	93;45	y	0.00	0	95.5	0	130;61	n	0.00	0	122.5	0	158;87	n	0.00	0	120.0	0	156;84	n	0.00	0	36.0	0	49;23	n	0.01	1	98.0	1	124;72	n	0.00	0	51.0	0	63;39	n	0.00	0	73.5	0	92;55	n	0.00	0	138.5	0	183;94	n	0.00	0	71.5	0	88;55	n	0.00	0	133.5	0	171;96	n	ENSMUSG00000037669.16	Ldah	chr12	protein_coding	lipid droplet associated hydrolase
known_NIR_4179	chr12	83577680	83578511	+	83577680	83579053	A3SS	ENSMUST00000021645.9	known	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.12	2	14	2	14	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000021222.10	Dcaf4	chr12	protein_coding	DDB1 and CUL4 associated factor 4
known_NIR_4180	chr12	83642096	83643771	-	83642096	83643178	5pMXE	ENSMUST00000223380.2	known	0.93	63	5	63	5	y	0.96	23	1	23	1	n	1.00	47	0	47	0	n	0.93	75	6	75	6	y	0.98	92	2	92	2	y	0.95	41	2	41	2	y	0.93	65	5	65	5	y	0.92	48	4	48	4	y	0.91	43	4	43	4	y	0.92	59	5	59	5	y	0.98	46	1	46	1	n	0.94	64	4	64	4	y	ENSMUSG00000042628.9	Zfyve1	chr12	protein_coding	zinc finger, FYVE domain containing 1
known_NIR_4181	chr12	83679191	83689403	+	83685965	83689403	A5SS&ES	ENSMUST00000182004.8	known	0.94	15	1	15	1	n	1.00	7	0	7	0	n	0.96	23	1	23	1	n	0.78	18	5	18	5	y	0.90	27	3	27	3	y	0.75	15	5	15	5	y	0.76	22	7	22	7	y	0.94	17	1	17	1	n	0.74	14	5	14	5	y	0.81	22	5	22	5	y	0.79	11	3	11	3	y	0.67	16	8	16	8	y	ENSMUSG00000010608.16	Rbm25	chr12	protein_coding	RNA binding motif protein 25
known_NIR_4182	chr12	83679191;83685965	83685902;83689176	+	83679191	83689176	cassetteExon	ENSMUST00000182618.8	known	1.00	6.5	0	6;7	0	n	0.78	3.5	1	3;4	1	n	0.62	10.0	6	8;12	6	y	0.79	11.5	3	13;10	3	y	0.54	3.5	3	3;4	3	y	0.33	2.0	4	2;2	4	n	0.40	4.0	6	6;2	6	y	0.20	1.0	4	1;1	4	n	0.69	4.5	2	7;2	2	y	0.88	7.0	1	7;7	1	n	0.50	1.0	1	1;1	1	n	0.43	1.5	2	0;3	2	n	ENSMUSG00000010608.16	Rbm25	chr12	protein_coding	RNA binding motif protein 25
known_NIR_4183	chr12	83679191;83685965	83685902;83689403	+	83679191	83689403	cassetteExon	ENSMUST00000048155.16	known	0.19	3.5	15	6;1	15	n	0.18	1.5	7	3;0	7	n	0.16	4.5	23	8;1	23	n	0.33	9.0	18	13;5	18	y	0.10	3.0	27	3;3	27	y	0.19	3.5	15	2;5	15	y	0.23	6.5	22	6;7	22	y	0.06	1.0	17	1;1	17	n	0.30	6.0	14	7;5	14	y	0.21	6.0	22	7;5	22	y	0.15	2.0	11	1;3	11	n	0.20	4.0	16	0;8	16	n	ENSMUSG00000010608.16	Rbm25	chr12	protein_coding	RNA binding motif protein 25
known_NIR_4184	chr12	83679191;83685965	83685902;83689403	+	83679191;83689293	83689176;83689403	MXE	ENSMUST00000182618.8	known	0.35	3.5	6.5	6;1	0;13	n	0.30	1.5	3.5	3;0	1;6	n	0.23	4.5	15.0	8;1	6;24	n	0.64	9.0	5.0	13;5	3;7	y	0.22	3.0	10.5	3;3	3;18	y	0.41	3.5	5.0	2;5	4;6	y	0.36	6.5	11.5	6;7	6;17	y	0.20	1.0	4.0	1;1	4;4	n	0.63	6.0	3.5	7;5	2;5	y	0.40	6.0	9.0	7;5	1;17	n	0.50	2.0	2.0	1;3	1;3	n	0.38	4.0	6.5	0;8	2;11	n	ENSMUSG00000010608.16	Rbm25	chr12	protein_coding	RNA binding motif protein 25
known_NIR_4185	chr12	83679191;83689293	83689176;83689403	+	83679191	83689403	cassetteExon	ENSMUST00000048155.16	known	0.30	6.5	15	0;13	15	n	0.33	3.5	7	1;6	7	n	0.39	15.0	23	6;24	23	y	0.22	5.0	18	3;7	18	y	0.28	10.5	27	3;18	27	y	0.25	5.0	15	4;6	15	y	0.34	11.5	22	6;17	22	y	0.19	4.0	17	4;4	17	y	0.20	3.5	14	2;5	14	y	0.29	9.0	22	1;17	22	n	0.15	2.0	11	1;3	11	n	0.29	6.5	16	2;11	16	y	ENSMUSG00000010608.16	Rbm25	chr12	protein_coding	RNA binding motif protein 25
known_NIR_4186	chr12	83685965	83689403	+	83689293	83689403	A5SS&ES	ENSMUST00000182347.8	known	0.07	1	13	1	13	n	0.00	0	6	0	6	n	0.04	1	24	1	24	n	0.42	5	7	5	7	y	0.14	3	18	3	18	y	0.45	5	6	5	6	y	0.29	7	17	7	17	y	0.20	1	4	1	4	n	0.50	5	5	5	5	y	0.23	5	17	5	17	y	0.50	3	3	3	3	n	0.42	8	11	8	11	y	ENSMUSG00000010608.16	Rbm25	chr12	protein_coding	RNA binding motif protein 25
known_NIR_4187	chr12	83685965;83689293	83689176;83689403	+	83685965	83689403	cassetteExon	ENSMUST00000182004.8	known	0.91	10.0	1	7;13	1	n	1.00	5.0	0	4;6	0	n	0.95	18.0	1	12;24	1	n	0.63	8.5	5	10;7	5	y	0.79	11.0	3	4;18	3	y	0.44	4.0	5	2;6	5	y	0.58	9.5	7	2;17	7	y	0.71	2.5	1	1;4	1	n	0.41	3.5	5	2;5	5	y	0.71	12.0	5	7;17	5	y	0.40	2.0	3	1;3	3	n	0.47	7.0	8	3;11	8	y	ENSMUSG00000010608.16	Rbm25	chr12	protein_coding	RNA binding motif protein 25
known_NIR_4188	chr12	83698218	83706197	+	83698218	83698420	3pMXE	ENSMUST00000183039.2	known	1.00	59	0	59	0	n	0.95	35	2	35	2	y	1.00	76	0	76	0	n	0.94	83	5	83	5	y	1.00	67	0	67	0	n	0.90	27	3	27	3	y	0.91	53	5	53	5	y	0.96	48	2	48	2	y	0.93	40	3	40	3	y	0.98	59	1	59	1	n	0.97	38	1	38	1	n	0.94	92	6	92	6	y	ENSMUSG00000010608.16	Rbm25	chr12	protein_coding	RNA binding motif protein 25
known_NIR_4189	chr12	83698218;83698524	83698420;83706197	+	83698218	83706197	cassetteExon	ENSMUST00000181983.8	known	0.03	2.0	59	0;4	59	n	0.03	1.0	35	2;0	35	n	0.01	1.0	76	0;2	76	n	0.03	2.5	83	5;0	83	n	0.02	1.5	67	0;3	67	n	0.07	2.0	27	3;1	27	n	0.06	3.5	53	5;2	53	y	0.06	3.0	48	2;4	48	y	0.06	2.5	40	3;2	40	y	0.02	1.0	59	1;1	59	n	0.01	0.5	38	1;0	38	n	0.04	3.5	92	6;1	92	n	ENSMUSG00000010608.16	Rbm25	chr12	protein_coding	RNA binding motif protein 25
known_NIR_4190	chr12	83735067	83746375	+	83735067	83746129	A3SS&ES	ENSMUST00000041806.13	known	0.00	0	21	0	21	n	0.00	0	14	0	14	n	0.00	0	61	0	61	n	0.00	0	59	0	59	n	0.04	2	48	2	48	y	0.00	0	31	0	31	n	0.00	0	49	0	49	n	0.04	2	50	2	50	y	0.00	0	22	0	22	n	0.00	0	39	0	39	n	0.00	0	39	0	39	n	0.00	0	36	0	36	n	ENSMUSG00000019969.15	Psen1	chr12	protein_coding	presenilin 1
known_NIR_4191	chr12	83842928;83844117	83843971;83846282	-	83842928	83846282	cassetteExon	ENSMUST00000117217.8	known	0.16	6.5	34	1;12	34	n	0.21	6.5	24	6;7	24	y	0.49	23.0	24	22;24	24	y	0.49	19.0	20	23;15	20	y	0.33	21.0	43	23;19	43	y	0.36	8.5	15	9;8	15	y	0.23	10.5	36	11;10	36	y	0.32	11.5	24	13;10	24	y	0.14	4.5	27	5;4	27	y	0.28	21.0	54	20;22	54	y	0.39	17.0	27	23;11	27	y	0.19	10.0	44	7;13	44	y	ENSMUSG00000021224.16	Numb	chr12	protein_coding	NUMB endocytic adaptor protein
known_NIR_4192	chr12	83858134;83872065	83872033;83878696	-	83858134	83878696	cassetteExon	ENSMUST00000117217.8	known	0.18	3.5	16	6;1	16	n	0.07	2.0	27	2;2	27	y	0.21	8.5	32	9;8	32	y	0.24	12.0	39	13;11	39	y	0.21	10.5	40	11;10	40	y	0.18	5.5	25	5;6	25	y	0.22	11.5	40	14;9	40	y	0.19	7.5	33	9;6	33	y	0.13	6.5	43	6;7	43	y	0.15	8.0	46	9;7	46	y	0.21	4.5	17	6;3	17	y	0.12	5.5	42	6;5	42	y	ENSMUSG00000021224.16	Numb	chr12	protein_coding	NUMB endocytic adaptor protein
known_NIR_4193	chr12	83889132	83923442	-	83889132;83902298	83902214;83923442	ES	ENSMUST00000117217.8	known	0.54	11	9.5	11	10;9	y	0.25	4	12.0	4	13;11	y	0.34	11	21.0	11	22;20	y	0.50	22	22.0	22	19;25	y	0.53	25	22.0	25	29;15	y	0.42	5	7.0	5	6;8	y	0.40	16	24.5	16	34;15	y	0.41	10	14.5	10	19;10	y	0.42	9	12.5	9	10;15	y	0.36	14	25.0	14	25;25	y	0.33	7	14.5	7	18;11	y	0.41	15	22.0	15	25;19	y	ENSMUSG00000021224.16	Numb	chr12	protein_coding	NUMB endocytic adaptor protein
known_NIR_4194	chr12	83923586	83968414	-	83923586	83968592	A5SS	ENSMUST00000117217.8	known	0.12	1	7	1	7	n	0.22	2	7	2	7	n	0.24	6	19	6	19	y	0.20	5	20	5	20	y	0.35	11	20	11	20	y	0.33	4	8	4	8	y	0.11	3	25	3	25	y	0.07	1	13	1	13	n	0.23	5	17	5	17	y	0.07	2	25	2	25	y	0.14	2	12	2	12	y	0.20	5	20	5	20	y	ENSMUSG00000021224.16	Numb	chr12	protein_coding	NUMB endocytic adaptor protein
known_NIR_4195	chr12	84057040	84061153	+	84056740	84061153	A5SS	ENSMUST00000168120.3	known	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	21	0	21	n	0.11	1	8	1	8	n	0.00	0	3	0	3	n	0.00	0	27	0	27	n	0.11	2	16	2	16	y	0.00	0	8	0	8	n	ENSMUSG00000072949.7	Acot1	chr12	protein_coding	acyl-CoA thioesterase 1
known_NIR_4196	chr12	84061355	84063855	+	84061355	84063554	A3SS	ENSMUST00000168120.3	known	0.33	3	6	3	6	n	0.15	2	11	2	11	y	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.19	3	13	3	13	y	0.25	1	3	1	3	n	0.04	2	46	2	46	y	0.23	5	17	5	17	y	0.00	0	4	0	4	n	0.14	4	25	4	25	y	0.10	2	19	2	19	y	0.29	5	12	5	12	y	ENSMUSG00000072949.7	Acot1	chr12	protein_coding	acyl-CoA thioesterase 1
known_NIR_4197	chr12	84089610	84089965	+	84088813	84089965	A5SS	ENSMUST00000021652.5	known	0.00	0	32	0	32	n	0.00	0	29	0	29	n	0.00	0	46	0	46	n	0.00	0	24	0	24	n	0.00	0	66	0	66	n	0.00	0	25	0	25	n	0.00	0	66	0	66	n	0.00	0	32	0	32	n	0.00	0	24	0	24	n	0.03	2	78	2	78	y	0.00	0	58	0	58	n	0.00	0	39	0	39	n	ENSMUSG00000052392.6	Acot4	chr12	protein_coding	acyl-CoA thioesterase 4
known_NIR_4198	chr12	84103885	84105502	+	84103885	84105195	3pMXE	ENSMUST00000221229.2	known	0.00	0	6	0	6	n	0.43	3	4	3	4	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.19	3	13	3	13	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.09	4	43	4	43	y	0.03	1	29	1	29	n	0.00	0	7	0	7	n	ENSMUSG00000113475.2	Gm49366	chr12	protein_coding	predicted gene, 49366
known_NIR_4199	chr12	84332307	84339058	+	84332250	84339058	A5SS	ENSMUST00000123614.8	known	0.03	2	63	2	63	y	0.07	3	43	3	43	y	0.04	3	64	3	64	y	0.04	4	106	4	106	y	0.03	3	111	3	111	y	0.06	2	32	2	32	y	0.01	1	100	1	100	n	0.05	3	63	3	63	y	0.01	1	103	1	103	n	0.03	4	138	4	138	y	0.06	5	75	5	75	y	0.06	7	118	7	118	y	ENSMUSG00000072946.13	Ptgr2	chr12	protein_coding	prostaglandin reductase 2
known_NIR_4200	chr12	84342109;84343130	84343002;84344785	+	84342109	84344785	cassetteExon	ENSMUST00000123614.8	known	0.02	2.0	96	0;4	96	n	0.06	5.5	89	5;6	89	y	0.09	9.5	93	4;15	93	y	0.02	2.5	144	4;1	144	n	0.05	8.0	164	12;4	164	y	0.07	6.0	74	8;4	74	y	0.07	11.0	153	14;8	153	y	0.04	4.0	93	5;3	93	y	0.03	3.5	119	4;3	119	y	0.05	9.5	176	8;11	176	y	0.02	2.5	123	3;2	123	y	0.04	7.0	181	7;7	181	y	ENSMUSG00000072946.13	Ptgr2	chr12	protein_coding	prostaglandin reductase 2
known_NIR_4201	chr12	84344976	84352700	+	84344976	84349011	3pMXE	ENSMUST00000138733.8	known	0.05	6	109	6	109	y	0.00	0	64	0	64	n	0.05	6	108	6	108	y	0.04	5	127	5	127	y	0.01	1	132	1	132	n	0.01	1	68	1	68	n	0.03	4	135	4	135	y	0.04	3	81	3	81	y	0.01	1	121	1	121	n	0.04	6	163	6	163	y	0.02	3	125	3	125	y	0.03	5	161	5	161	y	ENSMUSG00000072946.13	Ptgr2	chr12	protein_coding	prostaglandin reductase 2
known_NIR_4202	chr12	84344976	84352700	+	84344976;84349181	84349011;84352700	ES	ENSMUST00000123614.8	known	0.06	6	103.0	6	109;97	y	0.00	0	68.0	0	64;72	n	0.06	6	93.0	6	108;78	y	0.04	5	134.0	5	127;141	y	0.01	1	126.0	1	132;120	n	0.01	1	70.0	1	68;72	n	0.03	4	124.0	4	135;113	y	0.04	3	69.0	3	81;57	y	0.01	1	102.0	1	121;83	n	0.04	6	157.0	6	163;151	y	0.03	3	112.0	3	125;99	y	0.03	5	157.0	5	161;153	y	ENSMUSG00000072946.13	Ptgr2	chr12	protein_coding	prostaglandin reductase 2
known_NIR_4203	chr12	84355206	84355949	+	84355206	84357693	A3SS	ENSMUST00000123614.8	known	0.00	0	83	0	83	n	0.07	5	71	5	71	y	0.00	0	75	0	75	n	0.00	0	119	0	119	n	0.00	0	134	0	134	n	0.00	0	59	0	59	n	0.01	1	108	1	108	n	0.00	0	72	0	72	n	0.01	1	104	1	104	n	0.01	1	162	1	162	n	0.00	0	130	0	130	n	0.02	3	141	3	141	y	ENSMUSG00000072946.13	Ptgr2	chr12	protein_coding	prostaglandin reductase 2
known_NIR_4204	chr12	84363948	84372345	+	84363948	84368586	A3SS&ES	ENSMUST00000221490.2	known	0.06	1	16	1	16	n	0.00	0	11	0	11	n	0.00	0	18	0	18	n	0.00	0	19	0	19	n	0.00	0	26	0	26	n	0.00	0	12	0	12	n	0.00	0	24	0	24	n	0.09	1	10	1	10	n	0.00	0	21	0	21	n	0.00	0	32	0	32	n	0.13	2	13	2	13	y	0.04	1	23	1	23	n	ENSMUSG00000042472.12	Zfp410	chr12	protein_coding	zinc finger protein 410
known_NIR_4205	chr12	84363948	84372345	+	84369793	84372345	A5SS&ES	ENSMUST00000222258.2	known	0.05	1	21	1	21	n	0.00	0	19	0	19	n	0.00	0	44	0	44	n	0.00	0	24	0	24	n	0.00	0	30	0	30	n	0.00	0	14	0	14	n	0.00	0	50	0	50	n	0.07	1	14	1	14	n	0.00	0	8	0	8	n	0.00	0	29	0	29	n	0.07	2	27	2	27	y	0.03	1	36	1	36	n	ENSMUSG00000042472.12	Zfp410	chr12	protein_coding	zinc finger protein 410
known_NIR_4206	chr12	84363983	84368586	+	84363948	84368586	A5SS	ENSMUST00000045931.12	known	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.14	3	18	3	18	y	0.00	0	19	0	19	n	0.13	4	26	4	26	y	0.00	0	12	0	12	n	0.00	0	24	0	24	n	0.33	5	10	5	10	y	0.00	0	21	0	21	n	0.00	0	32	0	32	n	0.19	3	13	3	13	y	0.04	1	23	1	23	n	ENSMUSG00000042472.12	Zfp410	chr12	protein_coding	zinc finger protein 410
known_NIR_4207	chr12	84369793	84372377	+	84369793	84372345	A3SS	ENSMUST00000045931.12	known	0.12	3	21	3	21	y	0.14	3	19	3	19	y	0.12	6	44	6	44	y	0.00	0	24	0	24	n	0.06	2	30	2	30	y	0.12	2	14	2	14	y	0.04	2	50	2	50	y	0.12	2	14	2	14	y	0.00	0	8	0	8	n	0.12	4	29	4	29	y	0.10	3	27	3	27	y	0.08	3	36	3	36	y	ENSMUSG00000042472.12	Zfp410	chr12	protein_coding	zinc finger protein 410
known_NIR_4208	chr12	84372563	84372637	+	84372563	84374053	A3SS	ENSMUST00000045931.12	known	0.00	0	31	0	31	n	0.00	0	41	0	41	n	0.10	6	54	6	54	y	0.00	0	34	0	34	n	0.03	1	34	1	34	n	0.04	1	23	1	23	n	0.00	0	37	0	37	n	0.00	0	34	0	34	n	0.00	0	15	0	15	n	0.00	0	53	0	53	n	0.00	0	26	0	26	n	0.00	0	30	0	30	n	ENSMUSG00000042472.12	Zfp410	chr12	protein_coding	zinc finger protein 410
known_NIR_4209	chr12	84372563	84374091	+	84372563	84374053	A3SS	ENSMUST00000045931.12	known	0.00	0	31	0	31	n	0.07	3	41	3	41	y	0.05	3	54	3	54	y	0.00	0	34	0	34	n	0.00	0	34	0	34	n	0.00	0	23	0	23	n	0.05	2	37	2	37	y	0.00	0	34	0	34	n	0.00	0	15	0	15	n	0.00	0	53	0	53	n	0.00	0	26	0	26	n	0.00	0	30	0	30	n	ENSMUSG00000042472.12	Zfp410	chr12	protein_coding	zinc finger protein 410
known_NIR_4210	chr12	84374244	84384390	+	84374244	84376576	3pMXE	ENSMUST00000221656.2	known	0.00	0	37	0	37	n	0.00	0	22	0	22	n	0.02	1	51	1	51	n	0.00	0	31	0	31	n	0.00	0	42	0	42	n	0.05	1	19	1	19	n	0.04	2	47	2	47	y	0.00	0	18	0	18	n	0.00	0	28	0	28	n	0.02	1	49	1	49	n	0.00	0	39	0	39	n	0.00	0	39	0	39	n	ENSMUSG00000042472.12	Zfp410	chr12	protein_coding	zinc finger protein 410
known_NIR_4211	chr12	84379798	84384390	+	84374244	84384390	A5SS	ENSMUST00000222471.2	known	1.00	38	0	38	0	n	1.00	28	0	28	0	n	0.98	46	1	46	1	n	1.00	29	0	29	0	n	1.00	40	0	40	0	n	0.97	28	1	28	1	n	0.95	41	2	41	2	y	1.00	33	0	33	0	n	1.00	25	0	25	0	n	0.98	40	1	40	1	n	1.00	23	0	23	0	n	1.00	36	0	36	0	n	ENSMUSG00000042472.12	Zfp410	chr12	protein_coding	zinc finger protein 410
known_NIR_4212	chr12	84385556;84386027	84385825;84386876	+	84385556	84386876	cassetteExon	ENSMUST00000045931.12	known	0.03	1.0	34	1;1	34	n	0.01	0.5	33	0;1	33	n	0.04	2.0	55	2;2	55	y	0.05	1.5	26	1;2	26	n	0.02	1.5	65	2;1	65	n	0.11	2.5	21	0;5	21	n	0.03	1.5	53	3;0	53	n	0.00	0.0	32	0;0	32	n	0.06	2.5	42	4;1	42	n	0.02	1.0	42	2;0	42	n	0.00	0.0	36	0;0	36	n	0.03	1.5	52	0;3	52	n	ENSMUSG00000042472.12	Zfp410	chr12	protein_coding	zinc finger protein 410
known_NIR_4213	chr12	84417128	84417698	+	84417160	84417698	A5SS	ENSMUST00000110276.8	known	0.03	1	29	1	29	n	0.25	7	21	7	21	y	0.07	3	40	3	40	y	0.15	4	23	4	23	y	0.07	3	42	3	42	y	0.03	1	29	1	29	n	0.05	2	38	2	38	y	0.04	1	23	1	23	n	0.13	4	27	4	27	y	0.09	4	42	4	42	y	0.05	2	36	2	36	y	0.07	2	27	2	27	y	ENSMUSG00000021235.14	Coq6	chr12	protein_coding	coenzyme Q6 monooxygenase
known_NIR_4214	chr12	84417944	84418178	+	84417944	84418225	A3SS	ENSMUST00000110276.8	known	0.04	2	43	2	43	y	0.05	3	52	3	52	y	0.04	2	50	2	50	y	0.06	3	45	3	45	y	0.06	4	59	4	59	y	0.00	0	33	0	33	n	0.03	2	64	2	64	y	0.11	2	16	2	16	y	0.19	6	25	6	25	y	0.06	3	50	3	50	y	0.03	1	35	1	35	n	0.03	2	61	2	61	y	ENSMUSG00000021235.14	Coq6	chr12	protein_coding	coenzyme Q6 monooxygenase
known_NIR_4215	chr12	84443732	84447604	-	84443732	84446114	A5SS&ES	ENSMUST00000021662.12	known	0.04	7	172	7	172	y	0.02	2	100	2	100	y	0.00	0	92	0	92	n	0.04	9	242	9	242	y	0.03	9	296	9	296	y	0.00	0	85	0	85	n	0.03	7	263	7	263	y	0.02	2	81	2	81	y	0.03	5	169	5	169	y	0.03	9	348	9	348	y	0.03	6	175	6	175	y	0.06	13	209	13	209	y	ENSMUSG00000021236.17	Entpd5	chr12	protein_coding	ectonucleoside triphosphate diphosphohydrolase 5
known_NIR_4216	chr12	84443732	84447604	-	84443732	84452180	A5SS	ENSMUST00000072061.12	known	0.50	7	7	7	7	y	0.40	2	3	2	3	n	0.00	0	10	0	10	n	0.53	9	8	9	8	y	0.45	9	11	9	11	y	-	-	-	-	-	-	0.39	7	11	7	11	y	0.40	2	3	2	3	n	0.50	5	5	5	5	y	0.41	9	13	9	13	y	0.75	6	2	6	2	n	0.52	13	12	13	12	y	ENSMUSG00000021236.17	Entpd5	chr12	protein_coding	ectonucleoside triphosphate diphosphohydrolase 5
known_NIR_4217	chr12	84443732	84447604	-	84443732;84446186	84446114;84447604	ES	ENSMUST00000122194.8	known	0.06	7	113.5	7	172;55	y	0.03	2	61.0	2	100;22	y	0.00	0	57.5	0	92;23	n	0.05	9	159.5	9	242;77	y	0.04	9	195.0	9	296;94	y	0.00	0	53.5	0	85;22	n	0.04	7	170.0	7	263;77	y	0.04	2	51.0	2	81;21	y	0.04	5	115.0	5	169;61	y	0.04	9	244.5	9	348;141	y	0.05	6	126.0	6	175;77	y	0.08	13	143.0	13	209;77	y	ENSMUSG00000021236.17	Entpd5	chr12	protein_coding	ectonucleoside triphosphate diphosphohydrolase 5
known_NIR_4218	chr12	84443732	84452180	-	84443732;84446186	84446114;84452180	ES	ENSMUST00000021662.12	known	0.07	7	99.5	7	172;27	y	0.04	3	65.5	3	100;31	y	0.14	10	60.0	10	92;28	y	0.05	8	146.5	8	242;51	y	0.06	11	182.0	11	296;68	y	0.00	0	52.5	0	85;20	n	0.06	11	160.5	11	263;58	y	0.06	3	49.0	3	81;17	y	0.05	5	101.0	5	169;33	y	0.06	13	208.0	13	348;68	y	0.02	2	106.0	2	175;37	y	0.09	12	126.0	12	209;43	y	ENSMUSG00000021236.17	Entpd5	chr12	protein_coding	ectonucleoside triphosphate diphosphohydrolase 5
known_NIR_4219	chr12	84446186	84447604	-	84446186	84452180	A5SS	ENSMUST00000021662.12	known	0.67	55	27	55	27	y	0.42	22	31	22	31	y	0.45	23	28	23	28	y	0.60	77	51	77	51	y	0.58	94	68	94	68	y	0.52	22	20	22	20	y	0.57	77	58	77	58	y	0.55	21	17	21	17	y	0.65	61	33	61	33	y	0.67	141	68	141	68	y	0.68	77	37	77	37	y	0.64	77	43	77	43	y	ENSMUSG00000021236.17	Entpd5	chr12	protein_coding	ectonucleoside triphosphate diphosphohydrolase 5
known_NIR_4220	chr12	84486631	84487009	-	84486489	84487009	A3SS	ENSMUST00000222641.2	known	0.02	6	268	6	268	y	0.03	6	192	6	192	y	0.02	3	188	3	188	y	0.00	0	399	0	399	n	0.02	10	449	10	449	y	0.02	3	164	3	164	y	0.02	8	332	8	332	y	0.00	0	223	0	223	n	0.03	8	311	8	311	y	0.02	8	493	8	493	y	0.00	0	312	0	312	n	0.00	0	488	0	488	n	ENSMUSG00000021238.12	Aldh6a1	chr12	protein_coding	aldehyde dehydrogenase family 6, subfamily A1
known_NIR_4221	chr12	84488698	84490503	-	84488698	84488845	A5SS	ENSMUST00000222062.2	known	0.01	2	277	2	277	y	0.03	5	147	5	147	y	0.00	0	173	0	173	n	0.00	1	423	1	423	n	0.00	1	415	1	415	n	0.00	0	156	0	156	n	0.00	1	343	1	343	n	0.01	3	200	3	200	y	0.01	3	262	3	262	y	0.00	2	456	2	456	y	0.00	0	235	0	235	n	0.00	1	441	1	441	n	ENSMUSG00000021238.12	Aldh6a1	chr12	protein_coding	aldehyde dehydrogenase family 6, subfamily A1
known_NIR_4222	chr12	84488698	84490503	-	84488698;84488919	84488845;84490503	ES	ENSMUST00000222641.2	known	0.01	2	256.0	2	277;235	y	0.03	5	146.5	5	147;146	y	0.00	0	178.5	0	173;184	n	0.00	1	410.0	1	423;397	n	0.00	1	401.0	1	415;387	n	0.00	0	150.5	0	156;145	n	0.00	1	354.0	1	343;365	n	0.01	3	204.0	3	200;208	y	0.01	3	235.0	3	262;208	y	0.00	2	422.5	2	456;389	y	0.00	0	248.5	0	235;262	n	0.00	1	414.0	1	441;387	n	ENSMUSG00000021238.12	Aldh6a1	chr12	protein_coding	aldehyde dehydrogenase family 6, subfamily A1
known_NIR_4223	chr12	84509226	84592679	+	84509226	84576464	3pMXE	ENSMUST00000137170.3	known	0.08	2	23	2	23	y	0.00	0	15	0	15	n	0.06	1	15	1	15	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.00	0	23	0	23	n	0.00	0	23	0	23	n	0.00	0	13	0	13	n	0.00	0	17	0	17	n	0.04	1	22	1	22	n	0.00	0	10	0	10	n	0.00	0	20	0	20	n	ENSMUSG00000085793.3	Lin52	chr12	protein_coding	lin-52 homolog (C. elegans)
known_NIR_4224	chr12	84649933	84650723	-	84649933	84650068	A5SS	ENSMUST00000221948.2	known	0.00	0	66	0	66	n	0.00	0	54	0	54	n	0.00	0	36	0	36	n	0.00	0	58	0	58	n	0.00	0	85	0	85	n	0.00	0	32	0	32	n	0.00	0	55	0	55	n	0.00	0	38	0	38	n	0.00	0	25	0	25	n	0.04	2	51	2	51	y	0.00	0	42	0	42	n	0.00	0	25	0	25	n	ENSMUSG00000021240.7	Abcd4	chr12	protein_coding	ATP-binding cassette, sub-family D (ALD), member 4
known_NIR_4225	chr12	84649933	84650723	-	84649933;84650183	84650068;84650723	ES	ENSMUST00000222581.2	known	0.00	0	57.5	0	66;49	n	0.00	0	54.0	0	54;54	n	0.00	0	30.5	0	36;25	n	0.00	0	53.5	0	58;49	n	0.00	0	71.0	0	85;57	n	0.00	0	27.5	0	32;23	n	0.00	0	46.0	0	55;37	n	0.00	0	38.5	0	38;39	n	0.00	0	26.5	0	25;28	n	0.04	2	53.5	2	51;56	y	0.00	0	39.0	0	42;36	n	0.00	0	28.5	0	25;32	n	ENSMUSG00000021240.7	Abcd4	chr12	protein_coding	ATP-binding cassette, sub-family D (ALD), member 4
known_NIR_4226	chr12	84652737	84652874	-	84652756	84652874	A3SS	ENSMUST00000222581.2	known	1.00	24	0	24	0	n	1.00	19	0	19	0	n	1.00	5	0	5	0	n	1.00	17	0	17	0	n	0.86	12	2	12	2	y	1.00	20	0	20	0	n	1.00	21	0	21	0	n	0.86	18	3	18	3	y	1.00	23	0	23	0	n	1.00	27	0	27	0	n	1.00	28	0	28	0	n	1.00	20	0	20	0	n	ENSMUSG00000021240.7	Abcd4	chr12	protein_coding	ATP-binding cassette, sub-family D (ALD), member 4
known_NIR_4227	chr12	84662218	84663896	-	84662218	84664057	A5SS	ENSMUST00000222581.2	known	0.12	2	15	2	15	y	0.08	1	12	1	12	n	0.00	0	2	0	2	n	0.00	0	19	0	19	n	0.00	0	24	0	24	n	0.00	0	10	0	10	n	0.17	2	10	2	10	y	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000021240.7	Abcd4	chr12	protein_coding	ATP-binding cassette, sub-family D (ALD), member 4
known_NIR_4228	chr12	84820145	84820370	+	84820145	84820349	A3SS	ENSMUST00000021667.7	known	0.28	32	81	32	81	y	0.28	27	70	27	70	y	0.28	30	79	30	79	y	0.37	35	60	35	60	y	0.27	44	119	44	119	y	0.25	22	65	22	65	y	0.26	42	121	42	121	y	0.16	15	76	15	76	y	0.36	38	67	38	67	y	0.26	36	105	36	105	y	0.26	26	75	26	75	y	0.34	44	86	44	86	y	ENSMUSG00000021241.8	Isca2	chr12	protein_coding	iron-sulfur cluster assembly 2
known_NIR_4229	chr12	84820451	84821317	+	84820451;84820682	84820567;84821317	ES	ENSMUST00000021667.7	known	0.50	64	63.0	64	65;61	y	0.52	66	60.0	66	50;70	y	0.38	55	91.0	55	97;85	y	0.49	67	68.5	67	66;71	y	0.45	80	98.5	80	112;85	y	0.55	44	36.0	44	40;32	y	0.47	85	97.5	85	99;96	y	0.52	48	45.0	48	52;38	y	0.45	54	66.0	54	61;71	y	0.52	99	91.5	99	82;101	y	0.39	54	85.0	54	84;86	y	0.40	55	82.0	55	81;83	y	ENSMUSG00000021241.8	Isca2	chr12	protein_coding	iron-sulfur cluster assembly 2
known_NIR_4230	chr12	84820451	84821317	+	84820682	84821317	5pMXE	ENSMUST00000220726.2	known	0.51	64	61	64	61	y	0.49	66	70	66	70	y	0.39	55	85	55	85	y	0.49	67	71	67	71	y	0.48	80	85	80	85	y	0.58	44	32	44	32	y	0.47	85	96	85	96	y	0.56	48	38	48	38	y	0.43	54	71	54	71	y	0.49	99	101	99	101	y	0.39	54	86	54	86	y	0.40	55	83	55	83	y	ENSMUSG00000021241.8	Isca2	chr12	protein_coding	iron-sulfur cluster assembly 2
known_NIR_4231	chr12	84973187;84974184	84974075;84974643	-	84973187	84974643	cassetteExon	ENSMUST00000163231.8	known	1.00	41.5	0	36;47	0	n	1.00	31.0	0	31;31	0	n	1.00	92.5	0	112;73	0	n	1.00	49.0	0	52;46	0	n	0.98	88.0	2	95;81	2	y	1.00	53.0	0	50;56	0	n	1.00	71.5	0	68;75	0	n	1.00	75.0	0	83;67	0	n	1.00	41.0	0	44;38	0	n	1.00	76.0	0	84;68	0	n	0.98	54.0	1	57;51	1	n	1.00	49.0	0	52;46	0	n	ENSMUSG00000042350.14	Arel1	chr12	protein_coding	apoptosis resistant E3 ubiquitin protein ligase 1
known_NIR_4232	chr12	84998155	84998965	-	84998155	85017403	A5SS	ENSMUST00000163231.8	known	0.06	1	15	1	15	n	0.00	0	6	0	6	n	0.07	2	28	2	28	y	0.00	0	20	0	20	n	0.00	0	32	0	32	n	0.00	0	13	0	13	n	0.07	2	26	2	26	y	0.00	0	23	0	23	n	0.00	0	13	0	13	n	0.00	0	23	0	23	n	0.00	0	12	0	12	n	0.06	2	30	2	30	y	ENSMUSG00000042350.14	Arel1	chr12	protein_coding	apoptosis resistant E3 ubiquitin protein ligase 1
known_NIR_4233	chr12	84998155	84998965	-	84998155	85017472	A5SS	ENSMUST00000167448.8	known	1.00	1	0	1	0	n	0.00	0	5	0	5	n	0.12	2	14	2	14	y	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.13	2	13	2	13	y	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.25	2	6	2	6	n	ENSMUSG00000042350.14	Arel1	chr12	protein_coding	apoptosis resistant E3 ubiquitin protein ligase 1
known_NIR_4234	chr12	84998155	85017472	-	84998155	85017403	A5SS	ENSMUST00000163231.8	known	0.00	0	15	0	15	n	0.45	5	6	5	6	y	0.33	14	28	14	28	y	0.26	7	20	7	20	y	0.22	9	32	9	32	y	0.46	11	13	11	13	y	0.33	13	26	13	26	y	0.28	9	23	9	23	y	0.24	4	13	4	13	y	0.30	10	23	10	23	y	0.00	0	12	0	12	n	0.17	6	30	6	30	y	ENSMUSG00000042350.14	Arel1	chr12	protein_coding	apoptosis resistant E3 ubiquitin protein ligase 1
known_NIR_4235	chr12	85062367	85075544	+	85062367	85080691	A3SS	ENSMUST00000168977.8	known	0.82	9	2	9	2	y	0.60	3	2	3	2	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.72	13	5	13	5	y	0.00	0	7	0	7	n	0.60	6	4	6	4	y	0.67	6	3	6	3	n	0.71	5	2	5	2	n	0.77	10	3	10	3	y	0.25	1	3	1	3	n	0.50	6	6	6	6	y	ENSMUSG00000021244.16	Ylpm1	chr12	protein_coding	YLP motif containing 1
known_NIR_4236	chr12	85062367	85080691	+	85062367;85077661	85075544;85080691	ES	ENSMUST00000021670.15	known	0.19	2	8.5	2	9;8	y	0.22	2	7.0	2	3;11	y	0.24	3	9.5	3	0;19	n	0.17	2	10.0	2	1;19	n	0.24	5	15.5	5	13;18	y	0.52	7	6.5	7	0;13	n	0.26	4	11.5	4	6;17	y	0.29	3	7.5	3	6;9	y	0.18	2	9.0	2	5;13	y	0.14	3	18.0	3	10;26	y	0.50	3	3.0	3	1;5	n	0.35	6	11.0	6	6;16	y	ENSMUSG00000021244.16	Ylpm1	chr12	protein_coding	YLP motif containing 1
known_NIR_4237	chr12	85077661	85080691	+	85062367	85080691	A5SS	ENSMUST00000168977.8	known	0.80	8	2	8	2	y	0.85	11	2	11	2	y	0.86	19	3	19	3	y	0.90	19	2	19	2	y	0.78	18	5	18	5	y	0.65	13	7	13	7	y	0.81	17	4	17	4	y	0.75	9	3	9	3	y	0.87	13	2	13	2	y	0.90	26	3	26	3	y	0.62	5	3	5	3	n	0.73	16	6	16	6	y	ENSMUSG00000021244.16	Ylpm1	chr12	protein_coding	YLP motif containing 1
known_NIR_4238	chr12	85104076	85111745	+	85104076;85107088	85107037;85111745	ES	ENSMUST00000168977.8	known	0.15	4	23.0	4	18;28	y	0.00	0	22.0	0	23;21	n	0.00	0	28.5	0	24;33	n	0.05	2	34.5	2	36;33	y	0.05	2	35.5	2	35;36	y	0.00	0	26.0	0	22;30	n	0.04	2	49.5	2	41;58	y	0.06	1	15.0	1	14;16	n	0.07	1	14.0	1	9;19	n	0.04	2	45.0	2	50;40	y	0.07	2	25.5	2	21;30	y	0.08	3	35.0	3	30;40	y	ENSMUSG00000021244.16	Ylpm1	chr12	protein_coding	YLP motif containing 1
known_NIR_4239	chr12	85104076	85111745	+	85107088	85111745	5pMXE	ENSMUST00000167838.8	known	0.12	4	28	4	28	y	0.00	0	21	0	21	n	0.00	0	33	0	33	n	0.06	2	33	2	33	y	0.05	2	36	2	36	y	0.00	0	30	0	30	n	0.03	2	58	2	58	y	0.06	1	16	1	16	n	0.05	1	19	1	19	n	0.05	2	40	2	40	y	0.06	2	30	2	30	y	0.07	3	40	3	40	y	ENSMUSG00000021244.16	Ylpm1	chr12	protein_coding	YLP motif containing 1
known_NIR_4240	chr12	85157733	85158272	+	85157733	85165133	A3SS	ENSMUST00000221842.2	known	1.00	95	0	95	0	n	1.00	69	0	69	0	n	1.00	113	0	113	0	n	1.00	196	0	196	0	n	1.00	185	0	185	0	n	1.00	77	0	77	0	n	0.99	153	2	153	2	y	1.00	101	0	101	0	n	1.00	93	0	93	0	n	1.00	205	0	205	0	n	1.00	83	0	83	0	n	1.00	145	0	145	0	n	ENSMUSG00000004789.11	Dlst	chr12	protein_coding	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)
known_NIR_4241	chr12	85157733	85162047	+	85157733;85158305	85158272;85162047	ES	ENSMUST00000053811.10	known	0.09	10	99.0	10	95;103	y	0.03	2	72.0	2	69;75	y	0.02	2	121.0	2	113;129	y	0.02	4	204.5	4	196;213	y	0.03	5	194.5	5	185;204	y	0.00	0	88.0	0	77;99	n	0.00	0	160.0	0	153;167	n	0.03	4	110.5	4	101;120	y	0.03	3	101.0	3	93;109	y	0.02	4	210.0	4	205;215	y	0.07	7	91.0	7	83;99	y	0.01	1	160.0	1	145;175	n	ENSMUSG00000004789.11	Dlst	chr12	protein_coding	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)
known_NIR_4242	chr12	85175215	85177234	+	85175215;85176639	85176566;85177234	ES	ENSMUST00000053811.10	known	0.00	0	187.5	0	147;228	n	0.00	0	135.5	0	129;142	n	0.00	0	214.5	0	207;222	n	0.00	1	241.0	1	219;263	n	0.00	1	253.5	1	222;285	n	0.00	0	162.0	0	155;169	n	0.00	0	266.5	0	236;297	n	0.00	0	135.0	0	133;137	n	0.00	0	171.0	0	141;201	n	0.01	2	290.5	2	266;315	y	0.00	0	183.0	0	155;211	n	0.00	1	241.0	1	236;246	n	ENSMUSG00000004789.11	Dlst	chr12	protein_coding	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)
known_NIR_4243	chr12	85266707	85266871	+	85266716	85266871	A5SS	ENSMUST00000004910.12	known	0.02	1	58	1	58	n	0.00	0	54	0	54	n	0.01	1	80	1	80	n	0.03	2	73	2	73	y	0.00	0	62	0	62	n	0.06	3	44	3	44	y	0.03	2	57	2	57	y	0.00	0	47	0	47	n	0.11	4	34	4	34	y	0.03	2	72	2	72	y	0.02	1	47	1	47	n	0.00	0	69	0	69	n	ENSMUSG00000004788.12	Eif2b2	chr12	protein_coding	eukaryotic translation initiation factor 2B, subunit 2 beta
known_NIR_4244	chr12	85269613	85271329	+	85269613	85270155	3pMXE	ENSMUST00000128709.2	known	0.00	0	48	0	48	n	0.00	0	56	0	56	n	0.01	1	83	1	83	n	0.02	1	46	1	46	n	0.04	2	47	2	47	y	0.09	3	32	3	32	y	0.00	0	65	0	65	n	0.00	0	50	0	50	n	0.09	3	29	3	29	y	0.05	3	52	3	52	y	0.03	2	57	2	57	y	0.00	0	47	0	47	n	ENSMUSG00000004788.12	Eif2b2	chr12	protein_coding	eukaryotic translation initiation factor 2B, subunit 2 beta
known_NIR_4245	chr12	85269613	85271329	+	85269613;85270292	85270155;85271329	ES	ENSMUST00000004910.12	known	0.00	0	53.5	0	48;59	n	0.00	0	50.5	0	56;45	n	0.01	1	87.5	1	83;92	n	0.02	1	48.5	1	46;51	n	0.04	2	52.5	2	47;58	y	0.08	3	36.0	3	32;40	y	0.00	0	75.0	0	65;85	n	0.00	0	43.0	0	50;36	n	0.08	3	35.5	3	29;42	y	0.05	3	56.5	3	52;61	y	0.03	2	64.5	2	57;72	y	0.00	0	53.5	0	47;60	n	ENSMUSG00000004788.12	Eif2b2	chr12	protein_coding	eukaryotic translation initiation factor 2B, subunit 2 beta
known_NIR_4246	chr12	85308526;85309636	85309541;85312926	-	85308526	85312926	cassetteExon	ENSMUST00000223230.2	known	0.05	0.5	10	1;0	10	n	0.06	0.5	8	0;1	8	n	0.00	0.0	11	0;0	11	n	0.26	2.5	7	1;4	7	n	0.16	3.5	19	2;5	19	y	0.12	1.5	11	2;1	11	n	0.16	2.5	13	1;4	13	n	0.18	2.0	9	2;2	9	y	0.33	2.0	4	1;3	4	n	0.11	1.0	8	2;0	8	n	0.09	1.0	10	1;1	10	n	0.14	2.5	15	1;4	15	n	ENSMUSG00000021245.16	Mlh3	chr12	protein_coding	mutL homolog 3
known_NIR_4247	chr12	85325913	85326765	-	85319601	85326765	A3SS	ENSMUST00000008966.13	known	0.00	0	59	0	59	n	0.00	0	31	0	31	n	0.07	4	51	4	51	y	0.00	0	43	0	43	n	0.03	2	61	2	61	y	0.00	0	19	0	19	n	0.00	0	60	0	60	n	0.06	2	34	2	34	y	0.00	0	26	0	26	n	0.09	6	59	6	59	y	0.09	4	42	4	42	y	0.10	5	45	5	45	y	ENSMUSG00000008822.16	Acyp1	chr12	protein_coding	acylphosphatase 1, erythrocyte (common) type
known_NIR_4248	chr12	85326856	85334952	-	85326856	85327084	5pMXE	ENSMUST00000008966.13	known	0.12	7	50	7	50	y	0.13	6	39	6	39	y	0.00	0	49	0	49	n	0.17	12	57	12	57	y	0.21	13	48	13	48	y	0.03	1	30	1	30	n	0.25	21	62	21	62	y	0.07	2	25	2	25	y	0.31	20	44	20	44	y	0.24	20	63	20	63	y	0.22	16	56	16	56	y	0.03	2	58	2	58	y	ENSMUSG00000008822.16	Acyp1	chr12	protein_coding	acylphosphatase 1, erythrocyte (common) type
known_NIR_4249	chr12	85869022;85870208	85870073;85871245	-	85869022	85871245	cassetteExon	ENSMUST00000021676.12	known	0.02	4.0	167	1;7	167	n	0.01	1.0	184	0;2	184	n	0.02	3.5	169	4;3	169	y	0.01	2.0	209	2;2	209	y	0.01	4.5	313	2;7	313	y	0.01	1.5	151	2;1	151	n	0.01	2.5	243	1;4	243	n	0.03	5.0	169	2;8	169	y	0.01	2.0	214	1;3	214	n	0.01	2.5	317	2;3	317	y	0.01	2.0	229	1;3	229	n	0.00	0.5	235	0;1	235	n	ENSMUSG00000021252.12	Erg28	chr12	protein_coding	ergosterol biosynthesis 28
known_NIR_4250	chr12	85890634	85892021	+	85890634	85890720	A3SS	ENSMUST00000124701.8	known	0.20	1	4	1	4	n	0.40	2	3	2	3	n	1.00	4	0	4	0	n	1.00	6	0	6	0	n	0.60	9	6	9	6	y	0.83	5	1	5	1	n	0.50	3	3	3	3	n	1.00	1	0	1	0	n	0.64	9	5	9	5	y	0.60	6	4	6	4	y	0.33	1	2	1	2	n	0.57	4	3	4	3	n	ENSMUSG00000012609.20	Ttll5	chr12	protein_coding	tubulin tyrosine ligase-like family, member 5
known_NIR_4251	chr12	85890634;85890772	85890720;85892021	+	85890634	85892021	cassetteExon	ENSMUST00000177188.8	known	0.83	5.0	1	4;6	1	n	0.56	2.5	2	3;2	2	n	0.00	0.0	4	0;0	4	n	0.08	0.5	6	0;1	6	n	0.31	4.0	9	6;2	9	y	0.17	1.0	5	1;1	5	n	0.40	2.0	3	3;1	3	n	0.00	0.0	1	0;0	1	n	0.33	4.5	9	5;4	9	y	0.29	2.5	6	4;1	6	n	0.50	1.0	1	2;0	1	n	0.47	3.5	4	3;4	4	y	ENSMUSG00000012609.20	Ttll5	chr12	protein_coding	tubulin tyrosine ligase-like family, member 5
known_NIR_4252	chr12	85926249	85930078	+	85926249	85935933	A3SS	ENSMUST00000095536.10	known	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.07	1	14	1	14	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.14	2	12	2	12	y	0.00	0	9	0	9	n	ENSMUSG00000012609.20	Ttll5	chr12	protein_coding	tubulin tyrosine ligase-like family, member 5
known_NIR_4253	chr12	85955629	85964449	+	85955629;85959364	85959326;85964449	ES	ENSMUST00000040179.14	known	0.00	0	9.0	0	10;8	n	0.00	0	3.0	0	1;5	n	0.12	1	7.0	1	6;8	n	0.00	0	3.0	0	3;3	n	0.00	0	12.0	0	11;13	n	0.00	0	6.0	0	5;7	n	0.00	0	7.5	0	8;7	n	0.00	0	5.0	0	4;6	n	0.25	2	6.0	2	7;5	y	0.20	3	12.0	3	12;12	y	0.13	1	6.5	1	7;6	n	0.00	0	8.0	0	5;11	n	ENSMUSG00000012609.20	Ttll5	chr12	protein_coding	tubulin tyrosine ligase-like family, member 5
known_NIR_4254	chr12	85955629	85964449	+	85959364	85964449	5pMXE	ENSMUST00000176460.8	known	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.11	1	8	1	8	n	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.29	2	5	2	5	n	0.20	3	12	3	12	y	0.14	1	6	1	6	n	0.00	0	11	0	11	n	ENSMUSG00000012609.20	Ttll5	chr12	protein_coding	tubulin tyrosine ligase-like family, member 5
known_NIR_4255	chr12	85964548	85965705	+	85964606	85965705	A5SS	ENSMUST00000040179.14	known	0.00	0	9	0	9	n	0.33	2	4	2	4	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.23	3	10	3	10	y	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.25	3	9	3	9	y	0.33	4	8	4	8	y	0.22	2	7	2	7	n	ENSMUSG00000012609.20	Ttll5	chr12	protein_coding	tubulin tyrosine ligase-like family, member 5
known_NIR_4256	chr12	85964606	85965747	+	85964606	85965705	A3SS	ENSMUST00000040179.14	known	0.36	5	9	5	9	y	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.09	1	10	1	10	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.20	1	4	1	4	n	0.25	1	3	1	3	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	ENSMUSG00000012609.20	Ttll5	chr12	protein_coding	tubulin tyrosine ligase-like family, member 5
known_NIR_4257	chr12	85980448	85986103	+	85980448	85986100	A3SS	ENSMUST00000040179.14	known	0.17	2	10	2	10	y	0.08	1	11	1	11	n	0.29	2	5	2	5	n	0.23	3	10	3	10	y	0.12	2	14	2	14	y	0.00	0	8	0	8	n	0.00	0	17	0	17	n	0.20	1	4	1	4	n	0.00	0	10	0	10	n	0.00	0	20	0	20	n	0.00	0	7	0	7	n	0.25	5	15	5	15	y	ENSMUSG00000012609.20	Ttll5	chr12	protein_coding	tubulin tyrosine ligase-like family, member 5
known_NIR_4258	chr12	86059636	86099917	+	86059636	86067295	A3SS&ES	ENSMUST00000175844.2	known	0.00	0	13	0	13	n	0.07	1	14	1	14	n	0.00	0	6	0	6	n	0.14	2	12	2	12	y	0.11	2	17	2	17	y	0.00	0	7	0	7	n	0.12	2	14	2	14	y	0.00	0	5	0	5	n	0.14	2	12	2	12	y	0.04	1	26	1	26	n	0.12	2	14	2	14	y	0.11	2	16	2	16	y	ENSMUSG00000012609.20	Ttll5	chr12	protein_coding	tubulin tyrosine ligase-like family, member 5
known_NIR_4259	chr12	86059636	86099917	+	86059636;86067377	86067295;86099917	ES	ENSMUST00000040273.14	known	0.00	0	12.5	0	13;12	n	0.08	1	12.0	1	14;10	n	0.00	0	6.0	0	6;6	n	0.20	2	8.0	2	12;4	y	0.14	2	12.0	2	17;7	y	0.00	0	5.0	0	7;3	n	0.13	2	13.0	2	14;12	y	0.00	0	5.0	0	5;5	n	0.17	2	10.0	2	12;8	y	0.06	1	15.0	1	26;4	n	0.17	2	10.0	2	14;6	y	0.14	2	12.0	2	16;8	y	ENSMUSG00000012609.20	Ttll5	chr12	protein_coding	tubulin tyrosine ligase-like family, member 5
known_NIR_4260	chr12	86067377	86099917	+	86067377	86070994	A3SS&ES	ENSMUST00000175844.2	known	0.60	12	8	12	8	y	0.53	10	9	10	9	y	0.67	6	3	6	3	n	0.36	4	7	4	7	y	0.44	7	9	7	9	y	0.50	3	3	3	3	n	0.67	12	6	12	6	y	0.56	5	4	5	4	n	0.73	8	3	8	3	y	0.17	4	19	4	19	y	0.38	6	10	6	10	y	0.47	8	9	8	9	y	ENSMUSG00000012609.20	Ttll5	chr12	protein_coding	tubulin tyrosine ligase-like family, member 5
known_NIR_4261	chr12	86067377	86099917	+	86067377;86071116	86070994;86099917	ES	ENSMUST00000040179.14	known	0.69	12	5.5	12	8;3	y	0.62	10	6.0	10	9;3	y	0.67	6	3.0	6	3;3	y	0.42	4	5.5	4	7;4	y	0.52	7	6.5	7	9;4	y	0.60	3	2.0	3	3;1	n	0.71	12	5.0	12	6;4	y	0.71	5	2.0	5	4;0	n	0.76	8	2.5	8	3;2	y	0.21	4	15.0	4	19;11	y	0.41	6	8.5	6	10;7	y	0.53	8	7.0	8	9;5	y	ENSMUSG00000012609.20	Ttll5	chr12	protein_coding	tubulin tyrosine ligase-like family, member 5
known_NIR_4262	chr12	86315835	86335574	+	86315835;86328317	86328223;86335574	ES	ENSMUST00000221368.2	known	0.52	7	6.5	7	7;6	y	0.00	0	3.0	0	4;2	n	0.43	8	10.5	8	9;12	y	0.10	1	9.0	1	12;6	n	0.59	13	9.0	13	9;9	y	0.36	5	9.0	5	11;7	y	0.50	9	9.0	9	12;6	y	0.36	5	9.0	5	12;6	y	0.55	9	7.5	9	9;6	y	0.35	3	5.5	3	5;6	y	0.73	8	3.0	8	3;3	y	0.31	4	9.0	4	9;9	y	ENSMUSG00000021254.10	Gpatch2l	chr12	protein_coding	G patch domain containing 2 like
known_NIR_4263	chr12	86994273	86999518	+	86994024	86999518	A5SS	ENSMUST00000189246.7	known	1.00	22	0	22	0	n	1.00	12	0	12	0	n	0.97	33	1	33	1	n	0.91	31	3	31	3	y	0.94	34	2	34	2	y	1.00	18	0	18	0	n	0.97	34	1	34	1	n	1.00	20	0	20	0	n	1.00	19	0	19	0	n	0.89	34	4	34	4	y	0.94	16	1	16	1	n	0.88	15	2	15	2	y	ENSMUSG00000034157.13	Cipc	chr12	protein_coding	CLOCK interacting protein, circadian
known_NIR_4264	chr12	86994273;86994877	86994743;86999518	+	86994273	86999518	cassetteExon	ENSMUST00000187814.7	known	0.00	0.0	22	0;0	22	n	0.00	0.0	12	0;0	12	n	0.00	0.0	33	0;0	33	n	0.02	0.5	31	0;1	31	n	0.06	2.0	34	2;2	34	y	0.00	0.0	18	0;0	18	n	0.04	1.5	34	0;3	34	n	0.00	0.0	20	0;0	20	n	0.00	0.0	19	0;0	19	n	0.03	1.0	34	0;2	34	n	0.00	0.0	16	0;0	16	n	0.00	0.0	15	0;0	15	n	ENSMUSG00000034157.13	Cipc	chr12	protein_coding	CLOCK interacting protein, circadian
known_NIR_4265	chr12	86999705	87007046	+	87006602	87007046	A5SS&ES	ENSMUST00000191032.7	known	0.21	5	19	5	19	y	0.31	4	9	4	9	y	0.52	16	15	16	15	y	0.44	12	15	12	15	y	0.52	16	15	16	15	y	0.36	8	14	8	14	y	0.45	18	22	18	22	y	0.31	4	9	4	9	y	0.22	2	7	2	7	n	0.49	22	23	22	23	y	0.52	15	14	15	14	y	0.26	9	26	9	26	y	ENSMUSG00000034157.13	Cipc	chr12	protein_coding	CLOCK interacting protein, circadian
known_NIR_4266	chr12	86999705;87006602	87006502;87007046	+	86999705	87007046	cassetteExon	ENSMUST00000189246.7	known	0.78	17.5	5	16;19	5	y	0.70	9.5	4	10;9	4	y	0.47	14.0	16	13;15	16	y	0.51	12.5	12	10;15	12	y	0.55	19.5	16	24;15	16	y	0.67	16.0	8	18;14	8	y	0.60	26.5	18	31;22	18	y	0.76	12.5	4	16;9	4	y	0.84	10.5	2	14;7	2	y	0.48	20.5	22	18;23	22	y	0.44	12.0	15	10;14	15	y	0.72	23.0	9	20;26	9	y	ENSMUSG00000034157.13	Cipc	chr12	protein_coding	CLOCK interacting protein, circadian
known_NIR_4267	chr12	86999778	87006502	+	86999705	87006502	A5SS	ENSMUST00000185434.7	known	0.00	0	16	0	16	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.09	1	10	1	10	n	0.14	4	24	4	24	y	0.00	0	18	0	18	n	0.06	2	31	2	31	y	0.00	0	16	0	16	n	0.00	0	14	0	14	n	0.00	0	18	0	18	n	0.00	0	10	0	10	n	0.00	0	20	0	20	n	ENSMUSG00000034157.13	Cipc	chr12	protein_coding	CLOCK interacting protein, circadian
known_NIR_4268	chr12	86999778	87007046	+	86999705	87007046	A5SS	ENSMUST00000189246.7	known	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	16	0	16	n	0.14	2	12	2	12	y	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.00	0	18	0	18	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	22	0	22	n	0.00	0	15	0	15	n	0.10	1	9	1	9	n	ENSMUSG00000034157.13	Cipc	chr12	protein_coding	CLOCK interacting protein, circadian
known_NIR_4269	chr12	86999778	87007046	+	87006602	87007046	A5SS&ES	ENSMUST00000185434.7	known	0.00	0	19	0	19	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.12	2	15	2	15	y	0.00	0	15	0	15	n	0.00	0	14	0	14	n	0.00	0	22	0	22	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	23	0	23	n	0.00	0	14	0	14	n	0.04	1	26	1	26	n	ENSMUSG00000034157.13	Cipc	chr12	protein_coding	CLOCK interacting protein, circadian
known_NIR_4270	chr12	87194618	87204667	+	87202343	87204667	A5SS&ES	ENSMUST00000222885.2	known	0.97	198	6	198	6	y	1.00	174	0	174	0	n	0.98	90	2	90	2	y	1.00	241	0	241	0	n	1.00	202	0	202	0	n	0.99	112	1	112	1	n	0.98	241	4	241	4	y	0.98	125	3	125	3	y	0.98	188	4	188	4	y	0.99	265	2	265	2	y	1.00	191	0	191	0	n	1.00	235	0	235	0	n	ENSMUSG00000021033.12	Gstz1	chr12	protein_coding	glutathione transferase zeta 1 (maleylacetoacetate isomerase)
known_NIR_4271	chr12	87204434	87204667	+	87194618	87204667	A5SS	ENSMUST00000063117.10	known	0.75	606	198	606	198	y	0.75	526	174	526	174	y	0.77	306	90	306	90	y	0.74	695	241	695	241	y	0.80	815	202	815	202	y	0.73	305	112	305	112	y	0.76	760	241	760	241	y	0.78	432	125	432	125	y	0.76	601	188	601	188	y	0.76	847	265	847	265	y	0.75	563	191	563	191	y	0.77	784	235	784	235	y	ENSMUSG00000021033.12	Gstz1	chr12	protein_coding	glutathione transferase zeta 1 (maleylacetoacetate isomerase)
known_NIR_4272	chr12	87204434	87204667	+	87202343	87204667	A5SS	ENSMUST00000222885.2	known	0.99	606	6	606	6	y	1.00	526	0	526	0	n	0.99	306	2	306	2	y	1.00	695	0	695	0	n	1.00	815	0	815	0	n	1.00	305	1	305	1	n	0.99	760	4	760	4	y	0.99	432	3	432	3	y	0.99	601	4	601	4	y	1.00	847	2	847	2	y	1.00	563	0	563	0	n	1.00	784	0	784	0	n	ENSMUSG00000021033.12	Gstz1	chr12	protein_coding	glutathione transferase zeta 1 (maleylacetoacetate isomerase)
known_NIR_4273	chr12	87204718	87206414	+	87204718;87205919	87205852;87206414	ES	ENSMUST00000222885.2	known	0.03	43	1525.5	43	1446;1605	y	0.04	50	1243.5	50	1218;1269	y	0.06	48	704.0	48	647;761	y	0.03	52	1780.5	52	1710;1851	y	0.03	55	1985.0	55	1851;2119	y	0.04	33	703.0	33	675;731	y	0.02	47	1855.0	47	1730;1980	y	0.03	31	903.0	31	876;930	y	0.02	26	1363.0	26	1317;1409	y	0.02	37	2066.0	37	1971;2161	y	0.03	43	1422.5	43	1335;1510	y	0.02	41	1882.5	41	1799;1966	y	ENSMUSG00000021033.12	Gstz1	chr12	protein_coding	glutathione transferase zeta 1 (maleylacetoacetate isomerase)
known_NIR_4274	chr12	87310771	87310870	-	87310771	87312926	A5SS	ENSMUST00000072744.15	known	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.16	3	16	3	16	y	0.21	3	11	3	11	y	0.19	4	17	4	17	y	0.07	1	13	1	13	n	0.05	1	20	1	20	n	0.00	0	13	0	13	n	0.00	0	20	0	20	n	0.00	0	24	0	24	n	0.00	0	16	0	16	n	0.10	2	18	2	18	y	ENSMUSG00000021038.18	Vipas39	chr12	protein_coding	VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
known_NIR_4275	chr12	87313695	87314929	+	87313432	87314929	A5SS	ENSMUST00000223352.2	known	0.97	346	9	346	9	y	1.00	328	1	328	1	n	0.99	246	2	246	2	y	0.99	414	3	414	3	y	0.99	439	3	439	3	y	1.00	167	0	167	0	n	1.00	405	0	405	0	n	1.00	154	0	154	0	n	1.00	260	1	260	1	n	1.00	354	0	354	0	n	1.00	297	1	297	1	n	0.98	315	7	315	7	y	ENSMUSG00000021037.8	Ahsa1	chr12	protein_coding	AHA1, activator of heat shock protein ATPase 1
known_NIR_4276	chr12	87393575	87402300	-	87393575	87397035	5pMXE	ENSMUST00000170110.2	known	0.02	1	47	1	47	n	0.00	0	41	0	41	n	0.01	2	207	2	207	y	0.00	0	58	0	58	n	0.00	0	106	0	106	n	0.00	0	73	0	73	n	0.00	0	78	0	78	n	0.00	0	61	0	61	n	0.00	0	41	0	41	n	0.02	1	64	1	64	n	0.00	0	58	0	58	n	0.00	0	47	0	47	n	ENSMUSG00000021036.11	Sptlc2	chr12	protein_coding	serine palmitoyltransferase, long chain base subunit 2
known_NIR_4277	chr12	87393575	87402300	-	87393575;87397159	87397035;87402300	ES	ENSMUST00000021424.5	known	0.02	1	43.5	1	47;40	n	0.00	0	40.0	0	41;39	n	0.01	2	175.5	2	207;144	y	0.00	0	51.5	0	58;45	n	0.00	0	100.5	0	106;95	n	0.00	0	80.0	0	73;87	n	0.00	0	65.5	0	78;53	n	0.00	0	58.0	0	61;55	n	0.00	0	45.0	0	41;49	n	0.02	1	54.0	1	64;44	n	0.00	0	53.5	0	58;49	n	0.00	0	46.0	0	47;45	n	ENSMUSG00000021036.11	Sptlc2	chr12	protein_coding	serine palmitoyltransferase, long chain base subunit 2
known_NIR_4278	chr12	87478308	87480889	-	87478363	87480889	A3SS	ENSMUST00000162961.8	known	0.33	5	10	5	10	y	0.50	5	5	5	5	y	0.33	6	12	6	12	y	0.38	3	5	3	5	n	0.38	5	8	5	8	y	0.67	8	4	8	4	y	0.17	2	10	2	10	y	0.00	0	6	0	6	n	0.50	3	3	3	3	n	0.25	2	6	2	6	n	0.44	4	5	4	5	n	0.17	1	5	1	5	n	ENSMUSG00000079036.11	Alkbh1	chr12	protein_coding	alkB homolog 1, histone H2A dioxygenase
known_NIR_4279	chr12	8748159;8749188	8749064;8755933	+	8748159	8755933	cassetteExon	ENSMUST00000111123.9	known	0.05	0.5	9	0;1	9	n	0.06	0.5	8	0;1	8	n	0.12	6.0	45	5;7	45	y	0.01	0.5	35	0;1	35	n	0.07	3.0	40	3;3	40	y	0.09	2.5	26	1;4	26	n	0.17	4.0	19	4;4	19	y	0.08	2.0	24	4;0	24	n	0.04	0.5	13	0;1	13	n	0.10	2.5	22	3;2	22	y	0.16	1.5	8	3;0	8	n	0.06	2.0	32	0;4	32	n	ENSMUSG00000020594.15	Pum2	chr12	protein_coding	pumilio RNA-binding family member 2
known_NIR_4280	chr12	87485329	87490412	-	87485329;87487184	87487076;87490412	ES	ENSMUST00000162961.8	known	0.00	0	8.5	0	9;8	n	0.24	2	6.5	2	11;2	y	0.00	0	9.5	0	15;4	n	0.00	0	5.5	0	10;1	n	0.00	0	7.5	0	10;5	n	0.00	0	3.5	0	7;0	n	0.00	0	6.5	0	9;4	n	0.00	0	7.0	0	9;5	n	0.00	0	4.0	0	6;2	n	0.00	0	8.0	0	11;5	n	0.00	0	3.5	0	6;1	n	0.00	0	3.5	0	5;2	n	ENSMUSG00000079036.11	Alkbh1	chr12	protein_coding	alkB homolog 1, histone H2A dioxygenase
known_NIR_4281	chr12	87487184	87488041	-	87487184	87490412	A5SS	ENSMUST00000162961.8	known	0.33	4	8	4	8	y	0.00	0	2	0	2	n	0.33	2	4	2	4	n	0.50	1	1	1	1	n	0.44	4	5	4	5	n	1.00	5	0	5	0	n	0.43	3	4	3	4	n	0.29	2	5	2	5	n	0.50	2	2	2	2	n	0.38	3	5	3	5	n	0.00	0	1	0	1	n	0.50	2	2	2	2	n	ENSMUSG00000079036.11	Alkbh1	chr12	protein_coding	alkB homolog 1, histone H2A dioxygenase
known_NIR_4282	chr12	87487184	87490412	-	87487184	87488413	5pMXE	ENSMUST00000160919.8	known	0.50	8	8	8	8	y	0.67	2	1	2	1	n	0.57	4	3	4	3	n	0.33	1	2	1	2	n	0.83	5	1	5	1	n	0.00	0	4	0	4	n	0.57	4	3	4	3	n	0.56	5	4	5	4	n	1.00	2	0	2	0	n	0.56	5	4	5	4	n	0.20	1	4	1	4	n	0.50	2	2	2	2	n	ENSMUSG00000079036.11	Alkbh1	chr12	protein_coding	alkB homolog 1, histone H2A dioxygenase
known_NIR_4283	chr12	87487184;87488113	87488041;87488413	-	87487184	87488413	cassetteExon	ENSMUST00000160113.8	known	0.27	3.0	8	4;2	8	y	0.50	1.0	1	0;2	1	n	0.25	1.0	3	2;0	3	n	0.43	1.5	2	1;2	2	n	0.67	2.0	1	4;0	1	n	0.50	4.0	4	5;3	4	y	0.40	2.0	3	3;1	3	n	0.20	1.0	4	2;0	4	n	1.00	2.5	0	2;3	0	n	0.43	3.0	4	3;3	4	y	0.11	0.5	4	0;1	4	n	0.50	2.0	2	2;2	2	n	ENSMUSG00000079036.11	Alkbh1	chr12	protein_coding	alkB homolog 1, histone H2A dioxygenase
known_NIR_4284	chr12	87487184;87488550	87488413;87490412	-	87487184	87490412	cassetteExon	ENSMUST00000162961.8	known	0.45	6.5	8	8;5	8	y	0.64	3.5	2	1;6	2	n	0.60	6.0	4	3;9	4	y	0.67	2.0	1	2;2	1	n	0.38	3.0	5	1;5	5	n	1.00	7.5	0	4;11	0	n	0.38	2.5	4	3;2	4	n	0.47	4.5	5	4;5	5	y	0.50	2.0	2	0;4	2	n	0.52	5.5	5	4;7	5	y	0.75	3.0	1	4;2	1	n	0.67	4.0	2	2;6	2	y	ENSMUSG00000079036.11	Alkbh1	chr12	protein_coding	alkB homolog 1, histone H2A dioxygenase
known_NIR_4285	chr12	87494368	87496063	+	87494392	87496063	A5SS	ENSMUST00000161023.8	known	0.00	0	331	0	331	n	0.00	0	382	0	382	n	0.00	0	293	0	293	n	0.01	2	281	2	281	y	0.01	2	364	2	364	y	0.01	2	198	2	198	y	0.00	1	368	1	368	n	0.00	0	187	0	187	n	0.01	4	300	4	300	y	0.00	0	389	0	389	n	0.01	2	372	2	372	y	0.00	1	312	1	312	n	ENSMUSG00000021040.16	Slirp	chr12	protein_coding	SRA stem-loop interacting RNA binding protein
known_NIR_4286	chr12	87494392	87496070	+	87494392	87496063	A3SS	ENSMUST00000161023.8	known	0.00	0	331	0	331	n	0.00	0	382	0	382	n	0.00	0	293	0	293	n	0.00	0	281	0	281	n	0.01	2	364	2	364	y	0.00	0	198	0	198	n	0.00	0	368	0	368	n	0.00	0	187	0	187	n	0.00	0	300	0	300	n	0.00	0	389	0	389	n	0.00	0	372	0	372	n	0.00	0	312	0	312	n	ENSMUSG00000021040.16	Slirp	chr12	protein_coding	SRA stem-loop interacting RNA binding protein
known_NIR_4287	chr12	8763937	8769003	+	8763937	8768988	A3SS	ENSMUST00000111123.9	known	0.14	2	12	2	12	y	0.00	0	3	0	3	n	0.29	8	20	8	20	y	0.00	0	10	0	10	n	0.12	5	35	5	35	y	0.07	1	14	1	14	n	0.14	3	19	3	19	y	0.18	3	14	3	14	y	0.50	5	5	5	5	y	0.00	0	14	0	14	n	0.10	1	9	1	9	n	0.23	6	20	6	20	y	ENSMUSG00000020594.15	Pum2	chr12	protein_coding	pumilio RNA-binding family member 2
known_NIR_4288	chr12	8763937	8769006	+	8763937	8768988	A3SS	ENSMUST00000111123.9	known	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.20	5	20	5	20	y	0.00	0	10	0	10	n	0.08	3	35	3	35	y	0.12	2	14	2	14	y	0.00	0	19	0	19	n	0.18	3	14	3	14	y	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.05	1	20	1	20	n	ENSMUSG00000020594.15	Pum2	chr12	protein_coding	pumilio RNA-binding family member 2
known_NIR_4289	chr12	8763937	8769006	+	8763937	8769003	A3SS	ENSMUST00000020915.10	known	0.00	0	2	0	2	n	-	-	-	-	-	-	0.38	5	8	5	8	y	-	-	-	-	-	-	0.38	3	5	3	5	n	0.67	2	1	2	1	n	0.00	0	3	0	3	n	0.50	3	3	3	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.14	1	6	1	6	n	ENSMUSG00000020594.15	Pum2	chr12	protein_coding	pumilio RNA-binding family member 2
known_NIR_4290	chr12	8779149	8793761	+	8779149;8783509	8783273;8793761	ES	ENSMUST00000111123.9	known	0.45	11	13.5	11	8;19	y	0.62	8	5.0	8	1;9	n	0.48	36	38.5	36	22;55	y	0.63	26	15.5	26	9;22	y	0.43	14	18.5	14	13;24	y	0.61	23	14.5	23	15;14	y	0.42	17	23.0	17	15;31	y	0.58	13	9.5	13	6;13	y	0.44	8	10.0	8	5;15	y	0.47	22	25.0	22	10;40	y	0.42	10	14.0	10	12;16	y	0.53	32	28.0	32	20;36	y	ENSMUSG00000020594.15	Pum2	chr12	protein_coding	pumilio RNA-binding family member 2
known_NIR_4291	chr12	8794749	8797157	+	8794743	8797157	A5SS	ENSMUST00000111123.9	known	0.06	3	45	3	45	y	0.05	2	35	2	35	y	0.16	15	76	15	76	y	0.07	5	67	5	67	y	0.08	5	58	5	58	y	0.11	4	33	4	33	y	0.17	9	45	9	45	y	0.12	6	46	6	46	y	0.09	5	48	5	48	y	0.19	12	51	12	51	y	0.26	12	34	12	34	y	0.11	9	71	9	71	y	ENSMUSG00000020594.15	Pum2	chr12	protein_coding	pumilio RNA-binding family member 2
known_NIR_4292	chr12	8821839	8839407	+	8821701	8839407	A5SS	ENSMUST00000020911.14	known	0.00	2	465	2	465	y	0.00	0	285	0	285	n	0.00	1	634	1	634	n	0.01	3	513	3	513	y	0.00	0	585	0	585	n	0.00	0	351	0	351	n	0.00	0	485	0	485	n	0.00	0	281	0	281	n	0.01	2	328	2	328	y	0.00	2	485	2	485	y	0.00	0	381	0	381	n	0.00	0	603	0	603	n	ENSMUSG00000020592.15	Sdc1	chr12	protein_coding	syndecan 1
known_NIR_4293	chr12	8822511	8839407	+	8821701	8839407	A5SS	ENSMUST00000020911.14	known	0.12	63	465	63	465	y	0.11	35	285	35	285	y	0.12	88	634	88	634	y	0.11	66	513	66	513	y	0.10	67	585	67	585	y	0.07	28	351	28	351	y	0.11	60	485	60	485	y	0.10	32	281	32	281	y	0.08	29	328	29	328	y	0.09	50	485	50	485	y	0.09	36	381	36	381	y	0.08	54	603	54	603	y	ENSMUSG00000020592.15	Sdc1	chr12	protein_coding	syndecan 1
known_NIR_4294	chr12	88327553	88335105	+	88327365	88335105	A5SS	ENSMUST00000101165.9	known	0.00	0	2	0	2	n	0.50	3	3	3	3	n	0.33	2	4	2	4	n	0.30	3	7	3	7	y	0.46	6	7	6	7	y	0.33	2	4	2	4	n	0.14	1	6	1	6	n	0.50	1	1	1	1	n	0.50	1	1	1	1	n	0.67	4	2	4	2	n	0.22	2	7	2	7	n	0.20	1	4	1	4	n	ENSMUSG00000021044.16	Adck1	chr12	protein_coding	aarF domain containing kinase 1
known_NIR_4295	chr12	88327742	88335105	+	88327365	88335105	A5SS	ENSMUST00000101165.9	known	0.86	12	2	12	2	y	0.75	9	3	9	3	y	0.78	14	4	14	4	y	0.68	15	7	15	7	y	0.75	21	7	21	7	y	0.75	12	4	12	4	y	0.82	28	6	28	6	y	0.86	6	1	6	1	n	0.94	16	1	16	1	n	0.90	18	2	18	2	y	0.61	11	7	11	7	y	0.83	20	4	20	4	y	ENSMUSG00000021044.16	Adck1	chr12	protein_coding	aarF domain containing kinase 1
known_NIR_4296	chr12	88327742	88335105	+	88327553	88335105	A5SS	ENSMUST00000222695.2	known	1.00	12	0	12	0	n	0.75	9	3	9	3	y	0.88	14	2	14	2	y	0.83	15	3	15	3	y	0.78	21	6	21	6	y	0.86	12	2	12	2	y	0.97	28	1	28	1	n	0.86	6	1	6	1	n	0.94	16	1	16	1	n	0.82	18	4	18	4	y	0.85	11	2	11	2	y	0.95	20	1	20	1	n	ENSMUSG00000021044.16	Adck1	chr12	protein_coding	aarF domain containing kinase 1
known_NIR_4297	chr12	9085088	9088082	+	9085088	9085762	3pMXE	ENSMUST00000085741.2	known	0.00	0	104	0	104	n	0.00	0	121	0	121	n	0.03	2	75	2	75	y	0.01	1	101	1	101	n	0.00	0	106	0	106	n	0.03	2	76	2	76	y	0.00	0	89	0	89	n	0.00	0	53	0	53	n	0.00	0	95	0	95	n	0.01	1	118	1	118	n	0.01	1	118	1	118	n	0.00	0	133	0	133	n	ENSMUSG00000066637.3	Ttc32	chr12	protein_coding	tetratricopeptide repeat domain 32
known_NIR_4298	chr12	91670570	91680701	-	91615844	91680701	A3SS	ENSMUST00000052969.15	known	-	-	-	-	-	-	1.00	3	0	3	0	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.14	1	6	1	6	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	4	0	4	n	1.00	5	0	5	0	n	0.55	6	5	6	5	y	0.56	5	4	5	4	n	0.67	2	1	2	1	n	ENSMUSG00000020961.16	Ston2	chr12	protein_coding	stonin 2
known_NIR_4299	chr12	91702242	91707245	-	91680898	91707245	A3SS	ENSMUST00000052969.15	known	0.00	0	1	0	1	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	10	0	10	n	0.20	2	8	2	8	y	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	ENSMUSG00000020961.16	Ston2	chr12	protein_coding	stonin 2
known_NIR_4300	chr12	91798448	91799979	-	91798448	91799829	A5SS	ENSMUST00000021347.12	known	0.20	15	60	15	60	y	0.38	20	33	20	33	y	0.10	23	216	23	216	y	0.23	32	108	32	108	y	0.16	52	276	52	276	y	0.14	28	175	28	175	y	0.22	39	141	39	141	y	0.16	38	205	38	205	y	0.28	27	71	27	71	y	0.18	28	130	28	130	y	0.18	15	70	15	70	y	0.25	40	118	40	118	y	ENSMUSG00000020964.15	Sel1l	chr12	protein_coding	sel-1 suppressor of lin-12-like (C. elegans)
known_NIR_4301	chr12	98186686	98188859	-	98182596	98188859	A3SS	ENSMUST00000021390.9	known	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.00	0	21	0	21	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.15	2	11	2	11	y	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	ENSMUSG00000021003.11	Galc	chr12	protein_coding	galactosylceramidase
known_NIR_4302	chr12	98655887	98659816	-	98655887;98659215	98659131;98659816	ES	ENSMUST00000170188.8	known	0.00	0	4.5	0	6;3	n	0.17	1	5.0	1	4;6	n	0.04	1	27.5	1	30;25	n	0.53	5	4.5	5	7;2	y	0.11	2	17.0	2	16;18	y	0.00	0	8.5	0	11;6	n	0.09	1	10.5	1	16;5	n	0.13	1	6.5	1	2;11	n	0.50	3	3.0	3	3;3	n	0.20	2	8.0	2	8;8	y	0.36	4	7.0	4	7;7	y	0.17	2	10.0	2	12;8	y	ENSMUSG00000021009.16	Ptpn21	chr12	protein_coding	protein tyrosine phosphatase, non-receptor type 21
known_NIR_4303	chr12	98700093	98700729	-	98700093	98703624	A5SS	ENSMUST00000170188.8	known	0.00	0	6	0	6	n	0.33	1	2	1	2	n	0.00	0	9	0	9	n	0.50	5	5	5	5	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.12	1	7	1	7	n	0.25	1	3	1	3	n	0.25	1	3	1	3	n	0.86	6	1	6	1	n	0.33	1	2	1	2	n	0.00	0	8	0	8	n	ENSMUSG00000021009.16	Ptpn21	chr12	protein_coding	protein tyrosine phosphatase, non-receptor type 21
known_NIR_4304	chr12	98713781	98722444	+	98713781;98719151	98719037;98722444	ES	ENSMUST00000110104.10	known	0.09	5	48.0	5	46;50	y	0.12	5	36.0	5	19;53	y	0.01	1	88.0	1	61;115	n	0.05	4	72.0	4	60;84	y	0.09	7	74.0	7	57;91	y	0.10	3	27.5	3	8;47	y	0.06	4	58.5	4	60;57	y	0.03	1	35.5	1	29;42	n	0.12	6	45.0	6	37;53	y	0.13	11	75.5	11	55;96	y	0.02	1	53.0	1	39;67	n	0.06	4	64.5	4	49;80	y	ENSMUSG00000021012.17	Zc3h14	chr12	protein_coding	zinc finger CCCH type containing 14
known_NIR_4305	chr12	98730237	98749841	+	98730237;98740578	98740504;98749841	ES	ENSMUST00000110104.10	known	0.16	10	53.0	10	79;27	y	0.12	7	51.0	7	79;23	y	0.05	4	69.5	4	118;21	y	0.07	4	55.0	4	86;24	y	0.06	5	77.5	5	119;36	y	0.03	1	29.0	1	51;7	n	0.03	2	71.0	2	94;48	y	0.25	10	29.5	10	36;23	y	0.11	8	62.5	8	91;34	y	0.07	7	87.0	7	125;49	y	0.13	9	61.5	9	85;38	y	0.11	8	64.5	8	90;39	y	ENSMUSG00000021012.17	Zc3h14	chr12	protein_coding	zinc finger CCCH type containing 14
known_NIR_4306	chr12	98740578;98745526	98745367;98749841	+	98740578	98749841	cassetteExon	ENSMUST00000110104.10	known	0.44	21.5	27	43;0	27	n	0.49	22.5	23	45;0	23	n	0.62	34.0	21	68;0	21	n	0.54	28.0	24	56;0	24	n	0.51	37.5	36	75;0	36	n	0.61	11.0	7	22;0	7	n	0.39	31.0	48	62;0	48	n	0.41	16.0	23	30;2	23	y	0.36	19.5	34	39;0	34	n	0.44	38.0	49	76;0	49	n	0.34	20.0	38	40;0	38	n	0.45	32.0	39	64;0	39	n	ENSMUSG00000021012.17	Zc3h14	chr12	protein_coding	zinc finger CCCH type containing 14
known_NIR_4307	chr12	98745526	98749841	+	98730237	98749841	A5SS	ENSMUST00000222461.2	known	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.17	2	10	2	10	y	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	ENSMUSG00000021012.17	Zc3h14	chr12	protein_coding	zinc finger CCCH type containing 14
known_NIR_4308	chr12	98745526	98749841	+	98745526;98746539	98746307;98749841	ES	ENSMUST00000110105.10	known	0.00	0	91.5	0	92;91	n	0.00	0	55.5	0	54;57	n	0.00	0	109.5	0	97;122	n	0.00	0	46.0	0	41;51	n	0.00	0	87.0	0	78;96	n	0.00	0	35.0	0	35;35	n	0.00	0	83.5	0	73;94	n	0.04	2	47.5	2	56;39	y	0.00	0	56.0	0	50;62	n	0.00	0	84.5	0	67;102	n	0.00	0	69.0	0	76;62	n	0.00	0	76.0	0	71;81	n	ENSMUSG00000021012.17	Zc3h14	chr12	protein_coding	zinc finger CCCH type containing 14
known_NIR_4309	chr12	98746539	98749841	+	98730237	98749841	A5SS	ENSMUST00000222461.2	known	0.90	91	10	91	10	y	0.89	57	7	57	7	y	0.97	122	4	122	4	y	0.93	51	4	51	4	y	0.95	96	5	96	5	y	0.97	35	1	35	1	n	0.98	94	2	94	2	y	0.80	39	10	39	10	y	0.89	62	8	62	8	y	0.94	102	7	102	7	y	0.87	62	9	62	9	y	0.91	81	8	81	8	y	ENSMUSG00000021012.17	Zc3h14	chr12	protein_coding	zinc finger CCCH type containing 14
known_NIR_4310	chr12	98746539	98749841	+	98740578	98749841	A5SS	ENSMUST00000110104.10	known	0.77	91	27	91	27	y	0.71	57	23	57	23	y	0.85	122	21	122	21	y	0.68	51	24	51	24	y	0.73	96	36	96	36	y	0.83	35	7	35	7	y	0.66	94	48	94	48	y	0.63	39	23	39	23	y	0.65	62	34	62	34	y	0.68	102	49	102	49	y	0.62	62	38	62	38	y	0.68	81	39	81	39	y	ENSMUSG00000021012.17	Zc3h14	chr12	protein_coding	zinc finger CCCH type containing 14
known_NIR_4311	chr12	98751311	98751589	+	98751311	98751577	A3SS	ENSMUST00000110104.10	known	0.09	8	83	8	83	y	0.07	7	89	7	89	y	0.09	10	103	10	103	y	0.12	14	99	14	99	y	0.03	4	122	4	122	y	0.13	7	46	7	46	y	0.06	8	118	8	118	y	0.12	8	60	8	60	y	0.11	9	76	9	76	y	0.08	10	119	10	119	y	0.10	13	119	13	119	y	0.07	10	125	10	125	y	ENSMUSG00000021012.17	Zc3h14	chr12	protein_coding	zinc finger CCCH type containing 14
known_NIR_4312	chr12	98941040	98942249	+	98941040	98942236	A3SS	ENSMUST00000085109.10	known	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.10	2	18	2	18	y	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.00	0	15	0	15	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.06	1	17	1	17	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	ENSMUSG00000021013.17	Ttc8	chr12	protein_coding	tetratricopeptide repeat domain 8
known_NIR_4313	chr12	99175825;99185922	99185857;99257496	-	99175825	99257496	cassetteExon	ENSMUST00000046859.12	known	0.17	2.0	10	2;2	10	y	0.45	2.5	3	1;4	3	n	0.57	4.0	3	4;4	3	y	0.11	1.0	8	1;1	8	n	0.24	6.0	19	4;8	19	y	0.18	1.5	7	0;3	7	n	0.12	2.0	14	2;2	14	y	0.08	0.5	6	0;1	6	n	0.19	3.0	13	2;4	13	y	0.02	0.5	22	0;1	22	n	0.22	2.0	7	1;3	7	n	0.11	3.0	25	1;5	25	n	ENSMUSG00000033713.13	Foxn3	chr12	protein_coding	forkhead box N3
known_NIR_4314	chr12	99175825;99185922	99185860;99257496	-	99175825	99257496	cassetteExon	ENSMUST00000046859.12	known	0.09	1.0	10	0;2	10	n	0.40	2.0	3	0;4	3	n	0.40	2.0	3	0;4	3	n	0.06	0.5	8	0;1	8	n	0.19	4.5	19	1;8	19	n	0.30	3.0	7	3;3	7	y	0.15	2.5	14	3;2	14	y	0.25	2.0	6	3;1	6	n	0.19	3.0	13	2;4	13	y	0.04	1.0	22	1;1	22	n	0.18	1.5	7	0;3	7	n	0.09	2.5	25	0;5	25	n	ENSMUSG00000033713.13	Foxn3	chr12	protein_coding	forkhead box N3
known_NIR_4315	chr12	99355176	99416284	-	99355176	99359011	5pMXE	ENSMUST00000177451.8	known	0.17	1	5	1	5	n	0.60	3	2	3	2	n	0.19	3	13	3	13	y	0.27	4	11	4	11	y	0.25	4	12	4	12	y	0.80	4	1	4	1	n	0.14	1	6	1	6	n	0.33	5	10	5	10	y	0.00	0	2	0	2	n	0.30	6	14	6	14	y	0.44	4	5	4	5	n	0.47	8	9	8	9	y	ENSMUSG00000033713.13	Foxn3	chr12	protein_coding	forkhead box N3
known_NIR_4316	chr13	100091279	100097408	-	100095379	100097408	3pMXE	ENSMUST00000223013.2	known	0.00	0	174	0	174	n	0.00	0	150	0	150	n	0.00	0	93	0	93	n	0.00	0	179	0	179	n	0.01	1	166	1	166	n	0.00	0	57	0	57	n	0.01	1	157	1	157	n	0.00	0	62	0	62	n	0.00	0	150	0	150	n	0.00	0	209	0	209	n	0.01	1	183	1	183	n	0.01	2	175	2	175	y	ENSMUSG00000021646.10	Mccc2	chr13	protein_coding	methylcrotonoyl-Coenzyme A carboxylase 2 (beta)
known_NIR_4317	chr13	100091279;100095379	100095313;100097408	-	100091279	100097408	cassetteExon	ENSMUST00000221034.2	known	1.00	173.5	0	173;174	0	n	1.00	158.5	0	167;150	0	n	1.00	83.0	0	73;93	0	n	1.00	188.5	0	198;179	0	n	0.99	183.0	1	200;166	1	n	1.00	61.5	0	66;57	0	n	0.99	193.5	1	230;157	1	n	1.00	68.5	0	75;62	0	n	1.00	167.0	0	184;150	0	n	1.00	234.0	0	259;209	0	n	1.00	207.5	1	232;183	1	n	0.99	201.5	2	228;175	2	y	ENSMUSG00000021646.10	Mccc2	chr13	protein_coding	methylcrotonoyl-Coenzyme A carboxylase 2 (beta)
known_NIR_4318	chr13	100136824;100138947	100138795;100151894	-	100136824	100151894	cassetteExon	ENSMUST00000022148.7	known	0.04	3.0	64	5;1	64	n	0.03	2.0	77	3;1	77	n	0.03	1.5	46	3;0	46	n	0.03	3.5	104	6;1	104	n	0.08	9.0	103	13;5	103	y	0.01	0.5	48	0;1	48	n	0.04	3.0	79	5;1	79	n	0.02	1.0	47	1;1	47	n	0.03	2.0	74	4;0	74	n	0.01	1.5	115	3;0	115	n	0.05	4.0	81	7;1	81	n	0.01	1.0	103	1;1	103	n	ENSMUSG00000021646.10	Mccc2	chr13	protein_coding	methylcrotonoyl-Coenzyme A carboxylase 2 (beta)
known_NIR_4319	chr13	100138947;100146248	100146158;100151894	-	100138947	100151894	cassetteExon	ENSMUST00000221344.2	known	0.50	1.0	1	0;2	1	n	0.33	0.5	1	1;0	1	n	-	-	-	-	-	-	0.67	2.0	1	1;3	1	n	0.33	2.5	5	3;2	5	y	0.33	0.5	1	0;1	1	n	0.50	1.0	1	0;2	1	n	0.00	0.0	1	0;0	1	n	1.00	2.0	0	0;4	0	n	1.00	1.0	0	2;0	0	n	0.50	1.0	1	1;1	1	n	0.50	1.0	1	0;2	1	n	ENSMUSG00000021646.10	Mccc2	chr13	protein_coding	methylcrotonoyl-Coenzyme A carboxylase 2 (beta)
known_NIR_4320	chr13	100146248	100151894	-	100136824	100151894	A3SS	ENSMUST00000022148.7	known	0.03	2	64	2	64	y	0.00	0	77	0	77	n	0.00	0	46	0	46	n	0.03	3	104	3	104	y	0.02	2	103	2	103	y	0.02	1	48	1	48	n	0.02	2	79	2	79	y	0.00	0	47	0	47	n	0.05	4	74	4	74	y	0.00	0	115	0	115	n	0.01	1	81	1	81	n	0.02	2	103	2	103	y	ENSMUSG00000021646.10	Mccc2	chr13	protein_coding	methylcrotonoyl-Coenzyme A carboxylase 2 (beta)
known_NIR_4321	chr13	100183347	100186368	-	100183347	100186144	A5SS	ENSMUST00000038104.12	known	0.08	1	11	1	11	n	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.08	1	12	1	12	n	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.06	1	15	1	15	n	0.00	0	11	0	11	n	0.19	3	13	3	13	y	ENSMUSG00000049658.14	Bdp1	chr13	protein_coding	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB
known_NIR_4322	chr13	100289154	100296629	-	100289154;100291530	100291363;100296629	ES	ENSMUST00000067975.12	known	0.00	0	10.5	0	15;6	n	0.00	0	5.0	0	5;5	n	0.20	2	8.0	2	8;8	y	0.00	0	5.0	0	4;6	n	0.00	0	8.5	0	11;6	n	0.00	0	10.0	0	8;12	n	0.00	0	7.5	0	4;11	n	0.00	0	4.5	0	6;3	n	0.00	0	8.0	0	10;6	n	0.00	0	6.5	0	7;6	n	0.00	0	2.5	0	3;2	n	0.06	1	15.0	1	18;12	n	ENSMUSG00000078945.11	Naip2	chr13	protein_coding	NLR family, apoptosis inhibitory protein 2
known_NIR_4323	chr13	100596928	100605423	-	100596928	100598356	5pMXE	ENSMUST00000232447.2	known	0.84	26	5	26	5	y	0.86	18	3	18	3	y	1.00	18	0	18	0	n	0.96	22	1	22	1	n	0.85	23	4	23	4	y	1.00	11	0	11	0	n	1.00	27	0	27	0	n	0.64	7	4	7	4	y	0.90	19	2	19	2	y	0.83	19	4	19	4	y	0.89	17	2	17	2	y	0.88	29	4	29	4	y	ENSMUSG00000021639.18	Gtf2h2	chr13	protein_coding	general transcription factor II H, polypeptide 2
known_NIR_4324	chr13	100596928	100605423	-	100596928;100598470	100598356;100605423	ES	ENSMUST00000145266.8	known	0.91	26	2.5	26	5;0	n	0.82	18	4.0	18	3;5	y	0.90	18	2.0	18	0;4	n	0.92	22	2.0	22	1;3	n	0.90	23	2.5	23	4;1	n	1.00	11	0.0	11	0;0	n	0.98	27	0.5	27	0;1	n	0.78	7	2.0	7	4;0	n	0.95	19	1.0	19	2;0	n	0.84	19	3.5	19	4;3	y	0.92	17	1.5	17	2;1	n	0.94	29	2.0	29	4;0	n	ENSMUSG00000021639.18	Gtf2h2	chr13	protein_coding	general transcription factor II H, polypeptide 2
known_NIR_4325	chr13	100617810	100622579	-	100617810;100619551	100619446;100622579	ES	ENSMUST00000145266.8	known	0.00	0	25.5	0	24;27	n	0.00	0	15.5	0	18;13	n	0.00	0	24.0	0	26;22	n	0.00	0	33.5	0	32;35	n	0.06	2	31.0	2	37;25	y	0.00	0	12.5	0	10;15	n	0.07	2	28.0	2	27;29	y	0.00	0	19.0	0	14;24	n	0.00	0	13.0	0	17;9	n	0.00	0	24.5	0	21;28	n	0.04	1	23.0	1	21;25	n	0.13	3	20.0	3	24;16	y	ENSMUSG00000021639.18	Gtf2h2	chr13	protein_coding	general transcription factor II H, polypeptide 2
known_NIR_4326	chr13	100626672	100628965	-	100626672	100628751	5pMXE	ENSMUST00000145266.8	known	0.76	16	5	16	5	y	0.64	7	4	7	4	y	0.59	16	11	16	11	y	0.76	19	6	19	6	y	0.48	11	12	11	12	y	0.47	7	8	7	8	y	0.55	6	5	6	5	y	0.70	14	6	14	6	y	0.47	8	9	8	9	y	0.79	15	4	15	4	y	0.64	7	4	7	4	y	0.55	12	10	12	10	y	ENSMUSG00000021639.18	Gtf2h2	chr13	protein_coding	general transcription factor II H, polypeptide 2
known_NIR_4327	chr13	100677692	100689072	-	100677692	100688895	5pMXE	ENSMUST00000069756.11	known	1.00	6	0	6	0	n	1.00	8	0	8	0	n	1.00	7	0	7	0	n	0.80	8	2	8	2	y	0.62	8	5	8	5	y	0.86	6	1	6	1	n	0.83	15	3	15	3	y	0.89	8	1	8	1	n	1.00	9	0	9	0	n	0.91	10	1	10	1	n	1.00	13	0	13	0	n	0.88	22	3	22	3	y	ENSMUSG00000021638.13	Ocln	chr13	protein_coding	occludin
known_NIR_4328	chr13	100744320	100753113	-	100744320	100747941	A5SS&ES	ENSMUST00000022137.14	known	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.07	3	39	3	39	y	0.06	2	29	2	29	y	0.18	7	32	7	32	y	0.12	2	14	2	14	y	0.07	1	14	1	14	n	0.00	0	16	0	16	n	0.09	1	10	1	10	n	0.06	2	33	2	33	y	0.00	0	21	0	21	n	0.08	2	22	2	22	y	ENSMUSG00000021636.16	Marveld2	chr13	protein_coding	MARVEL (membrane-associating) domain containing 2
known_NIR_4329	chr13	100744320	100753113	-	100744320;100749092	100747941;100753113	ES	ENSMUST00000225754.2	known	0.00	0	10.5	0	14;7	n	0.00	0	9.5	0	10;9	n	0.09	3	29.0	3	39;19	y	0.09	2	21.5	2	29;14	y	0.23	7	23.5	7	32;15	y	0.17	2	10.0	2	14;6	y	0.08	1	11.5	1	14;9	n	0.00	0	10.0	0	16;4	n	0.17	1	5.0	1	10;0	n	0.08	2	22.5	2	33;12	y	0.00	0	13.5	0	21;6	n	0.10	2	17.5	2	22;13	y	ENSMUSG00000021636.16	Marveld2	chr13	protein_coding	MARVEL (membrane-associating) domain containing 2
known_NIR_4330	chr13	100749092	100753113	-	100744320	100753113	A3SS	ENSMUST00000163163.9	known	1.00	7	0	7	0	n	1.00	9	0	9	0	n	0.86	19	3	19	3	y	0.88	14	2	14	2	y	0.68	15	7	15	7	y	0.75	6	2	6	2	n	0.90	9	1	9	1	n	1.00	4	0	4	0	n	0.00	0	1	0	1	n	0.86	12	2	12	2	y	1.00	6	0	6	0	n	0.87	13	2	13	2	y	ENSMUSG00000021636.16	Marveld2	chr13	protein_coding	MARVEL (membrane-associating) domain containing 2
known_NIR_4331	chr13	100749092	100753113	-	100749092	100753434	A5SS	ENSMUST00000022137.14	known	1.00	7	0	7	0	n	0.90	9	1	9	1	n	0.79	19	5	19	5	y	0.88	14	2	14	2	y	0.75	15	5	15	5	y	1.00	6	0	6	0	n	1.00	9	0	9	0	n	0.57	4	3	4	3	n	-	-	-	-	-	-	0.92	12	1	12	1	n	0.67	6	3	6	3	n	0.76	13	4	13	4	y	ENSMUSG00000021636.16	Marveld2	chr13	protein_coding	MARVEL (membrane-associating) domain containing 2
known_NIR_4332	chr13	100786289	100787458	-	100786289	100787330	A5SS	ENSMUST00000022136.14	known	0.86	12	2	12	2	y	1.00	6	0	6	0	n	0.94	31	2	31	2	y	0.93	14	1	14	1	n	1.00	23	0	23	0	n	1.00	15	0	15	0	n	1.00	8	0	8	0	n	0.79	11	3	11	3	y	1.00	15	0	15	0	n	1.00	19	0	19	0	n	0.86	6	1	6	1	n	0.85	11	2	11	2	y	ENSMUSG00000021635.15	Rad17	chr13	protein_coding	RAD17 checkpoint clamp loader component
known_NIR_4333	chr13	100788225	100790699	+	100787953	100790699	A5SS	ENSMUST00000022135.15	known	0.03	4	123	4	123	y	0.02	2	114	2	114	y	0.05	13	242	13	242	y	0.02	4	157	4	157	y	0.02	4	157	4	157	y	0.03	3	98	3	98	y	0.02	3	158	3	158	y	0.00	0	88	0	88	n	0.00	0	138	0	138	n	0.04	8	176	8	176	y	0.01	1	126	1	126	n	0.00	0	168	0	168	n	ENSMUSG00000078941.10	Ak6	chr13	protein_coding	adenylate kinase 6
known_NIR_4334	chr13	100788294	100790699	+	100787953	100790699	A5SS	ENSMUST00000022135.15	known	0.02	2	123	2	123	y	0.00	0	114	0	114	n	0.02	4	242	4	242	y	0.01	2	157	2	157	y	0.01	1	157	1	157	n	0.02	2	98	2	98	y	0.00	0	158	0	158	n	0.03	3	88	3	88	y	0.02	3	138	3	138	y	0.02	4	176	4	176	y	0.00	0	126	0	126	n	0.02	3	168	3	168	y	ENSMUSG00000078941.10	Ak6	chr13	protein_coding	adenylate kinase 6
known_NIR_4335	chr13	100788294	100790699	+	100788225	100790699	A5SS	ENSMUST00000190210.2	known	0.33	2	4	2	4	n	0.00	0	2	0	2	n	0.24	4	13	4	13	y	0.33	2	4	2	4	n	0.20	1	4	1	4	n	0.40	2	3	2	3	n	0.00	0	3	0	3	n	1.00	3	0	3	0	n	1.00	3	0	3	0	n	0.33	4	8	4	8	y	0.00	0	1	0	1	n	1.00	3	0	3	0	n	ENSMUSG00000078941.10	Ak6	chr13	protein_coding	adenylate kinase 6
known_NIR_4336	chr13	100788336	100790699	+	100787953	100790699	A5SS	ENSMUST00000022135.15	known	0.00	0	123	0	123	n	0.00	0	114	0	114	n	0.02	4	242	4	242	y	0.00	0	157	0	157	n	0.00	0	157	0	157	n	0.01	1	98	1	98	n	0.01	1	158	1	158	n	0.00	0	88	0	88	n	0.00	0	138	0	138	n	0.01	1	176	1	176	n	0.00	0	126	0	126	n	0.00	0	168	0	168	n	ENSMUSG00000078941.10	Ak6	chr13	protein_coding	adenylate kinase 6
known_NIR_4337	chr13	100788336	100790699	+	100788225	100790699	A5SS	ENSMUST00000190210.2	known	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.24	4	13	4	13	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.25	1	3	1	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.11	1	8	1	8	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000078941.10	Ak6	chr13	protein_coding	adenylate kinase 6
known_NIR_4338	chr13	100790791	100791542	+	100790791	100800403	A3SS	ENSMUST00000022135.15	known	0.72	128	50	128	50	y	0.78	143	40	143	40	y	0.83	316	66	316	66	y	0.73	158	57	158	57	y	0.78	200	57	200	57	y	0.81	109	25	109	25	y	0.77	175	53	175	53	y	0.84	106	20	106	20	y	0.79	147	39	147	39	y	0.72	184	71	184	71	y	0.74	120	42	120	42	y	0.69	169	76	169	76	y	ENSMUSG00000078941.10	Ak6	chr13	protein_coding	adenylate kinase 6
known_NIR_4339	chr13	100818375;100819352	100819275;100820794	+	100818375	100820794	cassetteExon	ENSMUST00000170347.4	known	1.00	8.0	0	7;9	0	n	1.00	7.0	0	11;3	0	n	0.89	24.0	3	17;31	3	y	1.00	9.5	0	9;10	0	n	1.00	12.5	0	15;10	0	n	1.00	17.0	0	18;16	0	n	1.00	9.0	0	12;6	0	n	1.00	16.5	0	22;11	0	n	1.00	10.5	0	9;12	0	n	1.00	16.5	0	19;14	0	n	1.00	9.0	0	5;13	0	n	1.00	20.5	0	21;20	0	n	ENSMUSG00000048924.15	Ccdc125	chr13	protein_coding	coiled-coil domain containing 125
known_NIR_4340	chr13	100830216;100831008	100830878;100832619	+	100830216	100832619	cassetteExon	ENSMUST00000170347.4	known	0.97	31.0	1	20;42	1	n	0.93	14.0	1	13;15	1	n	1.00	25.5	0	25;26	0	n	1.00	11.0	0	14;8	0	n	1.00	17.5	0	15;20	0	n	1.00	15.0	0	19;11	0	n	0.96	23.5	1	23;24	1	n	0.89	16.5	2	19;14	2	y	1.00	17.0	0	12;22	0	n	1.00	18.5	0	20;17	0	n	0.94	14.5	1	12;17	1	n	0.89	16.0	2	13;19	2	y	ENSMUSG00000048924.15	Ccdc125	chr13	protein_coding	coiled-coil domain containing 125
known_NIR_4341	chr13	100853127	100855810	-	100853127;100854190	100854080;100855810	ES	ENSMUST00000091299.8	known	0.05	2	41.5	2	47;36	y	0.00	0	32.5	0	31;34	n	0.12	8	56.5	8	53;60	y	0.03	1	36.5	1	40;33	n	0.00	0	46.0	0	50;42	n	0.03	1	28.5	1	30;27	n	0.03	1	33.0	1	33;33	n	0.07	3	37.5	3	40;35	y	0.00	0	29.0	0	31;27	n	0.02	1	48.0	1	49;47	n	0.03	1	29.0	1	27;31	n	0.06	3	49.5	3	60;39	y	ENSMUSG00000069089.9	Cdk7	chr13	protein_coding	cyclin-dependent kinase 7
known_NIR_4342	chr13	100853127	100855810	-	100854190	100855810	3pMXE	ENSMUST00000225578.2	known	0.05	2	36	2	36	y	0.00	0	34	0	34	n	0.12	8	60	8	60	y	0.03	1	33	1	33	n	0.00	0	42	0	42	n	0.04	1	27	1	27	n	0.03	1	33	1	33	n	0.08	3	35	3	35	y	0.00	0	27	0	27	n	0.02	1	47	1	47	n	0.03	1	31	1	31	n	0.07	3	39	3	39	y	ENSMUSG00000069089.9	Cdk7	chr13	protein_coding	cyclin-dependent kinase 7
known_NIR_4343	chr13	100875703	100877676	-	100875709	100877676	A3SS	ENSMUST00000109333.8	known	0.14	16	95	16	95	y	0.16	15	77	15	77	y	0.10	8	75	8	75	y	0.14	13	80	13	80	y	0.12	16	115	16	115	y	0.16	8	41	8	41	y	0.17	24	115	24	115	y	0.02	1	53	1	53	n	0.14	10	61	10	61	y	0.18	23	103	23	103	y	0.11	13	106	13	106	y	0.08	9	107	9	107	y	ENSMUSG00000061474.12	Mrps36	chr13	protein_coding	mitochondrial ribosomal protein S36
known_NIR_4344	chr13	100877739	100880549	-	100877739	100881038	A5SS	ENSMUST00000109333.8	known	0.00	0	83	0	83	n	0.00	0	70	0	70	n	0.00	0	59	0	59	n	0.00	0	65	0	65	n	0.01	1	100	1	100	n	0.00	0	42	0	42	n	0.00	0	106	0	106	n	0.05	2	37	2	37	y	0.00	0	71	0	71	n	0.00	0	86	0	86	n	0.00	0	94	0	94	n	0.00	0	98	0	98	n	ENSMUSG00000061474.12	Mrps36	chr13	protein_coding	mitochondrial ribosomal protein S36
known_NIR_4345	chr13	100877739	100881038	-	100877739	100880297	5pMXE	ENSMUST00000125206.2	known	0.97	83	3	83	3	y	0.95	70	4	70	4	y	0.94	59	4	59	4	y	0.94	65	4	65	4	y	0.99	100	1	100	1	n	0.93	42	3	42	3	y	0.98	106	2	106	2	y	0.97	37	1	37	1	n	1.00	71	0	71	0	n	0.96	86	4	86	4	y	0.95	94	5	94	5	y	0.98	98	2	98	2	y	ENSMUSG00000061474.12	Mrps36	chr13	protein_coding	mitochondrial ribosomal protein S36
known_NIR_4346	chr13	100877739;100880332	100880297;100881038	-	100877739	100881038	cassetteExon	ENSMUST00000109333.8	known	0.03	2.5	83	3;2	83	y	0.03	2.0	70	4;0	70	n	0.06	3.5	59	4;3	59	y	0.04	2.5	65	4;1	65	n	0.00	0.5	100	1;0	100	n	0.03	1.5	42	3;0	42	n	0.01	1.0	106	2;0	106	n	0.03	1.0	37	1;1	37	n	0.00	0.0	71	0;0	71	n	0.04	3.5	86	4;3	86	y	0.04	3.5	94	5;2	94	y	0.02	2.5	98	2;3	98	y	ENSMUSG00000061474.12	Mrps36	chr13	protein_coding	mitochondrial ribosomal protein S36
known_NIR_4347	chr13	101827091	101828691	-	101827091	101837955	A5SS	ENSMUST00000055518.13	known	0.00	0	21	0	21	n	0.00	0	17	0	17	n	0.53	39	34	39	34	y	0.00	0	40	0	40	n	0.00	0	35	0	35	n	0.00	0	19	0	19	n	0.00	0	30	0	30	n	0.12	2	14	2	14	y	0.00	0	22	0	22	n	0.00	0	35	0	35	n	0.00	0	16	0	16	n	0.00	0	25	0	25	n	ENSMUSG00000041417.16	Pik3r1	chr13	protein_coding	phosphoinositide-3-kinase regulatory subunit 1
known_NIR_4348	chr13	101827091	101830884	-	101827091	101828691	5pMXE	ENSMUST00000035532.13	known	1.00	15	0	15	0	n	1.00	10	0	10	0	n	0.63	66	39	66	39	y	1.00	5	0	5	0	n	1.00	5	0	5	0	n	1.00	13	0	13	0	n	1.00	6	0	6	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	14	0	14	0	n	1.00	2	0	2	0	n	1.00	2	0	2	0	n	ENSMUSG00000041417.16	Pik3r1	chr13	protein_coding	phosphoinositide-3-kinase regulatory subunit 1
known_NIR_4349	chr13	101827091	101830884	-	101827091	101837955	A5SS	ENSMUST00000055518.13	known	0.42	15	21	15	21	y	0.37	10	17	10	17	y	0.66	66	34	66	34	y	0.11	5	40	5	40	y	0.12	5	35	5	35	y	0.41	13	19	13	19	y	0.17	6	30	6	30	y	0.00	0	14	0	14	n	0.00	0	22	0	22	n	0.29	14	35	14	35	y	0.11	2	16	2	16	y	0.07	2	25	2	25	y	ENSMUSG00000041417.16	Pik3r1	chr13	protein_coding	phosphoinositide-3-kinase regulatory subunit 1
known_NIR_4350	chr13	103894996	103895677	-	103894808	103895677	A3SS	ENSMUST00000210489.2	known	0.07	2	25	2	25	y	0.10	3	28	3	28	y	0.12	6	42	6	42	y	0.00	0	25	0	25	n	0.04	2	44	2	44	y	0.00	0	21	0	21	n	0.00	0	41	0	41	n	0.10	3	27	3	27	y	0.03	1	30	1	30	n	0.02	1	46	1	46	n	0.04	1	24	1	24	n	0.08	4	46	4	46	y	ENSMUSG00000032621.9	Srek1	chr13	protein_coding	splicing regulatory glutamine/lysine-rich protein 1
known_NIR_4351	chr13	103900514	103900804	-	103900514	103905825	A5SS	ENSMUST00000074616.7	known	0.26	5	14	5	14	y	0.54	14	12	14	12	y	0.63	22	13	22	13	y	0.33	13	26	13	26	y	0.54	14	12	14	12	y	0.57	8	6	8	6	y	0.69	20	9	20	9	y	0.36	4	7	4	7	y	0.25	3	9	3	9	y	0.21	4	15	4	15	y	0.46	6	7	6	7	y	0.30	7	16	7	16	y	ENSMUSG00000032621.9	Srek1	chr13	protein_coding	splicing regulatory glutamine/lysine-rich protein 1
known_NIR_4352	chr13	103903542	103905825	-	103900514	103905825	A3SS	ENSMUST00000074616.7	known	0.12	2	14	2	14	y	0.00	0	12	0	12	n	0.38	8	13	8	13	y	0.00	0	26	0	26	n	0.20	3	12	3	12	y	0.25	2	6	2	6	n	0.00	0	9	0	9	n	0.30	3	7	3	7	y	0.00	0	9	0	9	n	0.06	1	15	1	15	n	0.22	2	7	2	7	n	0.11	2	16	2	16	y	ENSMUSG00000032621.9	Srek1	chr13	protein_coding	splicing regulatory glutamine/lysine-rich protein 1
known_NIR_4353	chr13	103903542	103905825	-	103904730	103905825	A3SS&ES	ENSMUST00000211491.2	known	1.00	2	0	2	0	n	-	-	-	-	-	-	0.80	8	2	8	2	y	-	-	-	-	-	-	1.00	3	0	3	0	n	1.00	2	0	2	0	n	-	-	-	-	-	-	1.00	3	0	3	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	n	1.00	2	0	2	0	n	ENSMUSG00000032621.9	Srek1	chr13	protein_coding	splicing regulatory glutamine/lysine-rich protein 1
known_NIR_4354	chr13	103959914	103961228	-	103959914	103970006	A5SS	ENSMUST00000188997.7	known	0.80	71	18	71	18	y	0.81	75	18	75	18	y	0.90	98	11	98	11	y	0.83	85	17	85	17	y	0.80	114	29	114	29	y	0.73	44	16	44	16	y	0.76	86	27	86	27	y	0.84	47	9	47	9	y	0.90	82	9	82	9	y	0.76	83	26	83	26	y	0.88	76	10	76	10	y	0.87	90	14	90	14	y	ENSMUSG00000021709.15	Erbin	chr13	protein_coding	Erbb2 interacting protein
known_NIR_4355	chr13	103961434	103964415	-	103961356	103964415	A3SS	ENSMUST00000022222.12	known	1.00	45	0	45	0	n	1.00	39	0	39	0	n	0.95	77	4	77	4	y	0.97	62	2	62	2	y	0.97	94	3	94	3	y	0.96	49	2	49	2	y	0.98	58	1	58	1	n	1.00	44	0	44	0	n	1.00	59	0	59	0	n	0.95	98	5	98	5	y	0.97	36	1	36	1	n	0.97	72	2	72	2	y	ENSMUSG00000021709.15	Erbin	chr13	protein_coding	Erbb2 interacting protein
known_NIR_4356	chr13	103964531	103970006	-	103959914	103970006	A3SS	ENSMUST00000188997.7	known	0.74	50	18	50	18	y	0.70	42	18	42	18	y	0.88	79	11	79	11	y	0.79	64	17	64	17	y	0.76	90	29	90	29	y	0.73	43	16	43	16	y	0.73	72	27	72	27	y	0.83	43	9	43	9	y	0.85	52	9	52	9	y	0.74	75	26	75	26	y	0.81	44	10	44	10	y	0.84	76	14	76	14	y	ENSMUSG00000021709.15	Erbin	chr13	protein_coding	Erbb2 interacting protein
known_NIR_4357	chr13	103964531;103966839	103966696;103970006	-	103964531	103970006	cassetteExon	ENSMUST00000022222.12	known	0.12	6.5	50	6;7	50	y	0.18	9.0	42	7;11	42	y	0.26	28.0	79	18;38	79	y	0.18	14.5	64	15;14	64	y	0.16	17.0	90	10;24	90	y	0.13	6.5	43	8;5	43	y	0.16	14.0	72	10;18	72	y	0.17	8.5	43	6;11	43	y	0.27	19.5	52	19;20	52	y	0.24	24.0	75	18;30	75	y	0.26	15.5	44	17;14	44	y	0.16	14.5	76	7;22	76	y	ENSMUSG00000021709.15	Erbin	chr13	protein_coding	Erbb2 interacting protein
known_NIR_4358	chr13	103966839	103970006	-	103959914	103970006	A3SS	ENSMUST00000188997.7	known	0.28	7	18	7	18	y	0.38	11	18	11	18	y	0.78	38	11	38	11	y	0.45	14	17	14	17	y	0.45	24	29	24	29	y	0.24	5	16	5	16	y	0.40	18	27	18	27	y	0.55	11	9	11	9	y	0.69	20	9	20	9	y	0.54	30	26	30	26	y	0.58	14	10	14	10	y	0.61	22	14	22	14	y	ENSMUSG00000021709.15	Erbin	chr13	protein_coding	Erbb2 interacting protein
known_NIR_4359	chr13	104172231	104172962	-	104172231	104173362	A5SS	ENSMUST00000109315.5	known	0.26	20	58	20	58	y	0.22	13	47	13	47	y	0.17	11	54	11	54	y	0.15	11	61	11	61	y	0.25	26	80	26	80	y	0.20	9	37	9	37	y	0.30	31	72	31	72	y	0.30	21	48	21	48	y	0.18	10	47	10	47	y	0.19	19	82	19	82	y	0.18	16	72	16	72	y	0.16	12	64	12	64	y	ENSMUSG00000021710.12	Nln	chr13	protein_coding	neurolysin (metallopeptidase M3 family)
known_NIR_4360	chr13	104281059	104283752	-	104281062	104283752	A3SS	ENSMUST00000144060.8	known	0.53	26	23	26	23	y	0.45	29	35	29	35	y	0.43	28	37	28	37	y	0.51	26	25	26	25	y	0.49	41	43	41	43	y	0.47	22	25	22	25	y	0.49	38	40	38	40	y	0.46	19	22	19	22	y	0.37	15	26	15	26	y	0.48	41	44	41	44	y	0.60	46	31	46	31	y	0.51	24	23	24	23	y	ENSMUSG00000021711.18	Trappc13	chr13	protein_coding	trafficking protein particle complex 13
known_NIR_4361	chr13	104286691;104288690	104288673;104290804	-	104286691	104290804	cassetteExon	ENSMUST00000144060.8	known	0.52	26.0	24	28;24	24	y	0.51	14.5	14	14;15	14	y	0.43	26.5	35	28;25	35	y	0.42	24.0	33	28;20	33	y	0.57	40.5	30	43;38	30	y	0.60	22.5	15	25;20	15	y	0.52	39.0	36	36;42	36	y	0.70	23.0	10	25;21	10	y	0.57	21.0	16	22;20	16	y	0.68	39.5	19	40;39	19	y	0.53	17.0	15	16;18	15	y	0.59	32.0	22	34;30	22	y	ENSMUSG00000021711.18	Trappc13	chr13	protein_coding	trafficking protein particle complex 13
known_NIR_4362	chr13	104311512	104314622	-	104306396	104314622	A3SS	ENSMUST00000144060.8	known	0.10	5	45	5	45	y	0.03	1	33	1	33	n	0.14	8	51	8	51	y	0.12	7	53	7	53	y	0.07	5	67	5	67	y	0.00	0	33	0	33	n	0.07	4	53	4	53	y	0.04	2	49	2	49	y	0.16	7	36	7	36	y	0.20	16	66	16	66	y	0.19	10	42	10	42	y	0.03	2	76	2	76	y	ENSMUSG00000021711.18	Trappc13	chr13	protein_coding	trafficking protein particle complex 13
known_NIR_4363	chr13	104536514;104550318	104550216;104563443	+	104536514	104563443	cassetteExon	ENSMUST00000224784.2	known	-	-	-	-	-	-	1.00	0.5	0	0;1	0	n	0.71	5.0	2	7;3	2	y	-	-	-	-	-	-	0.33	1.0	2	1;1	2	n	1.00	0.5	0	0;1	0	n	0.82	4.5	1	5;4	1	n	1.00	0.5	0	0;1	0	n	-	-	-	-	-	-	1.00	0.5	0	1;0	0	n	0.33	0.5	1	0;1	1	n	-	-	-	-	-	-	ENSMUSG00000046169.11	Adamts6	chr13	protein_coding	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6
known_NIR_4364	chr13	106959559	106978597	-	106959559	106972720	5pMXE	ENSMUST00000191312.2	known	0.92	24	2	24	2	y	1.00	23	0	23	0	n	0.72	18	7	18	7	y	1.00	17	0	17	0	n	0.97	30	1	30	1	n	0.77	10	3	10	3	y	0.83	25	5	25	5	y	0.86	18	3	18	3	y	1.00	22	0	22	0	n	0.93	43	3	43	3	y	1.00	16	0	16	0	n	0.92	22	2	22	2	y	ENSMUSG00000042590.18	Ipo11	chr13	protein_coding	importin 11
known_NIR_4365	chr13	106971344	106972720	-	106959559	106972720	A3SS	ENSMUST00000190801.7	known	0.00	0	2	0	2	n	1.00	2	0	2	0	n	0.30	3	7	3	7	y	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000042590.18	Ipo11	chr13	protein_coding	importin 11
known_NIR_4366	chr13	107084167	107085209	+	107084167;107084628	107084576;107085209	ES	ENSMUST00000224052.2	known	0.80	4	1.0	4	1;1	n	0.91	10	1.0	10	1;1	n	1.00	27	0.0	27	0;0	n	1.00	13	0.0	13	0;0	n	0.90	13	1.5	13	1;2	n	0.88	7	1.0	7	2;0	n	0.90	19	2.0	19	2;2	y	1.00	7	0.0	7	0;0	n	1.00	9	0.0	9	0;0	n	1.00	20	0.0	20	0;0	n	1.00	9	0.0	9	0;0	n	1.00	7	0.0	7	0;0	n	ENSMUSG00000021692.10	Dimt1	chr13	protein_coding	DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)
known_NIR_4367	chr13	107105296	107111879	-	107105296;107111070	107111003;107111879	ES	ENSMUST00000022204.16	known	0.00	0	10.0	0	9;11	n	0.12	2	14.5	2	17;12	y	0.00	0	19.5	0	12;27	n	0.00	0	11.5	0	9;14	n	0.00	0	25.0	0	24;26	n	0.00	0	10.5	0	13;8	n	0.00	0	12.5	0	18;7	n	0.00	0	8.5	0	10;7	n	0.12	1	7.0	1	9;5	n	0.00	0	12.5	0	12;13	n	0.00	0	7.5	0	7;8	n	0.00	0	15.0	0	15;15	n	ENSMUSG00000021693.21	Kif2a	chr13	protein_coding	kinesin family member 2A
known_NIR_4368	chr13	107123877	107124518	-	107123877	107124461	A5SS	ENSMUST00000022204.16	known	0.86	6	1	6	1	n	0.00	0	4	0	4	n	0.60	12	8	12	8	y	0.56	5	4	5	4	n	0.43	12	16	12	16	y	0.89	8	1	8	1	n	0.67	12	6	12	6	y	0.17	1	5	1	5	n	0.40	2	3	2	3	n	0.56	5	4	5	4	n	0.00	0	4	0	4	n	0.14	2	12	2	12	y	ENSMUSG00000021693.21	Kif2a	chr13	protein_coding	kinesin family member 2A
known_NIR_4369	chr13	107130450	107158520	-	107130450	107133255	5pMXE	ENSMUST00000117423.9	known	0.86	6	1	6	1	n	1.00	3	0	3	0	n	0.88	7	1	7	1	n	0.62	5	3	5	3	n	0.91	21	2	21	2	y	0.67	2	1	2	1	n	1.00	8	0	8	0	n	1.00	2	0	2	0	n	0.50	3	3	3	3	n	1.00	8	0	8	0	n	0.00	0	1	0	1	n	1.00	13	0	13	0	n	ENSMUSG00000021693.21	Kif2a	chr13	protein_coding	kinesin family member 2A
known_NIR_4370	chr13	107130450;107133637	107133255;107158520	-	107130450	107158520	cassetteExon	ENSMUST00000022204.16	known	0.14	1.0	6	1;1	6	n	0.00	0.0	3	0;0	3	n	0.07	0.5	7	1;0	7	n	0.33	2.5	5	3;2	5	y	0.05	1.0	21	2;0	21	n	0.20	0.5	2	1;0	2	n	0.06	0.5	8	0;1	8	n	0.00	0.0	2	0;0	2	n	0.33	1.5	3	3;0	3	n	0.00	0.0	8	0;0	8	n	1.00	0.5	0	1;0	0	n	0.00	0.0	13	0;0	13	n	ENSMUSG00000021693.21	Kif2a	chr13	protein_coding	kinesin family member 2A
known_NIR_4371	chr13	108181167	108182959	+	108181020	108182959	A5SS	ENSMUST00000095458.6	known	-	-	-	-	-	-	0.78	7	2	7	2	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.50	9	9	9	9	y	-	-	-	-	-	-	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.58	7	5	7	5	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.42	11	15	11	15	y	ENSMUSG00000071180.6	Smim15	chr13	protein_coding	small integral membrane protein 15
known_NIR_4372	chr13	108181242	108182959	+	108181020	108182959	A5SS	ENSMUST00000095458.6	known	-	-	-	-	-	-	0.00	0	2	0	2	n	0.11	1	8	1	8	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.23	3	10	3	10	y	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.50	3	3	3	3	n	0.00	0	2	0	2	n	0.00	0	15	0	15	n	ENSMUSG00000071180.6	Smim15	chr13	protein_coding	small integral membrane protein 15
known_NIR_4373	chr13	108183102	108183996	+	108183102	108183974	A3SS	ENSMUST00000095458.6	known	0.00	0	57	0	57	n	0.00	0	51	0	51	n	0.00	0	73	0	73	n	0.00	0	50	0	50	n	0.00	0	78	0	78	n	0.00	0	32	0	32	n	0.00	0	55	0	55	n	0.11	5	39	5	39	y	0.00	0	46	0	46	n	0.00	0	60	0	60	n	0.00	0	37	0	37	n	0.00	0	52	0	52	n	ENSMUSG00000071180.6	Smim15	chr13	protein_coding	small integral membrane protein 15
known_NIR_4374	chr13	108189488	108228068	-	108189488;108217927	108217887;108228068	ES	ENSMUST00000163558.3	known	0.04	3	82.5	3	70;95	y	0.04	4	88.0	4	81;95	y	0.03	3	107.0	3	101;113	y	0.04	3	77.0	3	66;88	y	0.03	3	99.5	3	88;111	y	0.00	0	57.0	0	54;60	n	0.02	2	117.5	2	101;134	y	0.02	1	65.5	1	60;71	n	0.01	1	95.5	1	92;99	n	0.01	1	116.5	1	107;126	n	0.01	1	100.0	1	85;115	n	0.00	0	122.5	0	112;133	n	ENSMUSG00000068184.8	Ndufaf2	chr13	protein_coding	NADH:ubiquinone oxidoreductase complex assembly factor 2
known_NIR_4375	chr13	108297264;108303025	108302924;108305902	+	108297264	108305902	cassetteExon	ENSMUST00000123657.8	known	0.80	4.0	1	4;4	1	n	1.00	5.0	0	8;2	0	n	0.47	4.5	5	4;5	5	y	0.00	0.0	4	0;0	4	n	0.62	6.5	4	4;9	4	y	1.00	3.5	0	4;3	0	n	0.60	4.5	3	7;2	3	y	1.00	3.5	0	2;5	0	n	0.76	6.5	2	8;5	2	y	0.57	4.0	3	4;4	3	y	0.80	4.0	1	5;3	1	n	0.44	5.5	7	3;8	7	y	ENSMUSG00000021694.19	Ercc8	chr13	protein_coding	excision repaiross-complementing rodent repair deficiency, complementation group 8
known_NIR_4376	chr13	108312154;108312440	108312339;108314151	+	108312154	108314151	cassetteExon	ENSMUST00000123657.8	known	0.38	3.0	5	5;1	5	n	0.09	0.5	5	0;1	5	n	0.18	1.5	7	1;2	7	n	0.09	1.0	10	1;1	10	n	0.25	3.0	9	3;3	9	y	0.14	0.5	3	1;0	3	n	0.06	0.5	8	1;0	8	n	0.14	0.5	3	1;0	3	n	0.00	0.0	7	0;0	7	n	0.03	0.5	15	1;0	15	n	0.25	1.0	3	2;0	3	n	0.00	0.0	6	0;0	6	n	ENSMUSG00000021694.19	Ercc8	chr13	protein_coding	excision repaiross-complementing rodent repair deficiency, complementation group 8
known_NIR_4377	chr13	109769444	109876921	+	109718246	109876921	A5SS	ENSMUST00000079975.11	known	0.00	0	1	0	1	n	-	-	-	-	-	-	0.40	4	6	4	6	y	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	ENSMUSG00000021699.18	Pde4d	chr13	protein_coding	phosphodiesterase 4D, cAMP specific
known_NIR_4378	chr13	111577350	111585467	-	111577350;111584489	111584430;111585467	ES	ENSMUST00000047627.14	known	0.50	42	42.0	42	46;38	y	0.59	44	30.5	44	39;22	y	0.51	45	42.5	45	39;46	y	0.67	55	27.5	55	36;19	y	0.55	56	46.5	56	51;42	y	0.22	10	35.5	10	40;31	y	0.52	53	48.0	53	54;42	y	0.45	25	30.5	25	35;26	y	0.53	32	28.0	32	36;20	y	0.51	46	44.5	46	49;40	y	0.56	33	26.0	33	28;24	y	0.60	49	32.0	49	37;27	y	ENSMUSG00000032745.19	Gpbp1	chr13	protein_coding	GC-rich promoter binding protein 1
known_NIR_4379	chr13	111585533	111589907	-	111585533	111589558	A5SS	ENSMUST00000129638.2	known	0.01	1	90	1	90	n	0.03	2	75	2	75	y	0.00	0	107	0	107	n	0.05	5	87	5	87	y	0.02	2	101	2	101	y	0.00	0	52	0	52	n	0.04	5	110	5	110	y	0.00	0	65	0	65	n	0.00	0	67	0	67	n	0.01	1	98	1	98	n	0.03	2	65	2	65	y	0.04	4	100	4	100	y	ENSMUSG00000032745.19	Gpbp1	chr13	protein_coding	GC-rich promoter binding protein 1
known_NIR_4380	chr13	111585533	111589907	-	111585533;111589781	111589558;111589907	ES	ENSMUST00000047627.14	known	0.01	1	74.0	1	90;58	n	0.03	2	58.0	2	75;41	y	0.00	0	109.5	0	107;112	n	0.06	5	84.5	5	87;82	y	0.02	2	88.5	2	101;76	y	0.00	0	51.0	0	52;50	n	0.04	5	111.0	5	110;112	y	0.00	0	56.0	0	65;47	n	0.00	0	69.0	0	67;71	n	0.01	1	89.5	1	98;81	n	0.03	2	65.5	2	65;66	y	0.04	4	94.0	4	100;88	y	ENSMUSG00000032745.19	Gpbp1	chr13	protein_coding	GC-rich promoter binding protein 1
known_NIR_4381	chr13	111846341	111848223	+	111846341	111848220	A3SS	ENSMUST00000109272.9	known	0.12	1	7	1	7	n	0.00	0	7	0	7	n	0.07	1	14	1	14	n	0.00	0	15	0	15	n	0.00	0	18	0	18	n	0.00	0	10	0	10	n	0.19	5	22	5	22	y	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.00	0	15	0	15	n	0.12	1	7	1	7	n	0.20	4	16	4	16	y	ENSMUSG00000032727.15	Mier3	chr13	protein_coding	MIER family member 3
known_NIR_4382	chr13	112604209	112609121	+	112600784	112609121	A5SS	ENSMUST00000183663.8	known	0.00	0	24	0	24	n	0.00	0	21	0	21	n	0.00	0	66	0	66	n	0.00	0	67	0	67	n	0.03	2	78	2	78	y	0.00	0	50	0	50	n	0.00	0	52	0	52	n	0.00	0	37	0	37	n	0.00	0	39	0	39	n	0.00	0	78	0	78	n	0.00	0	22	0	22	n	0.00	0	63	0	63	n	ENSMUSG00000021756.13	Il6st	chr13	protein_coding	interleukin 6 signal transducer
known_NIR_4383	chr13	112806265	112822600	+	112806265	112820596	3pMXE	ENSMUST00000223839.2	known	0.70	7	3	7	3	y	0.67	2	1	2	1	n	0.70	7	3	7	3	y	0.89	8	1	8	1	n	0.84	16	3	16	3	y	0.78	7	2	7	2	n	0.82	9	2	9	2	y	0.83	10	2	10	2	y	0.50	1	1	1	1	n	0.77	10	3	10	3	y	1.00	7	0	7	0	n	1.00	12	0	12	0	n	ENSMUSG00000047789.6	Slc38a9	chr13	protein_coding	solute carrier family 38, member 9
known_NIR_4384	chr13	112937800;112988088	112987937;112993280	+	112937800;112971547	112971393;112993280	MXE	ENSMUST00000016144.12	known	0.47	7.0	8.0	10;4	7;9	y	0.94	8.5	0.5	7;10	1;0	n	0.63	19.0	11.0	17;21	9;13	y	0.54	6.5	5.5	5;8	3;8	y	0.72	20.5	8.0	18;23	5;11	y	0.71	15.0	6.0	7;23	7;5	y	0.64	25.5	14.5	24;27	14;15	y	0.66	9.5	5.0	8;11	5;5	y	0.67	5.0	2.5	3;7	3;2	y	0.59	8.0	5.5	8;8	8;3	y	0.65	10.0	5.5	7;13	3;8	y	0.77	15.0	4.5	16;14	3;6	y	ENSMUSG00000021759.15	Plpp1	chr13	protein_coding	phospholipid phosphatase 1
known_NIR_4385	chr13	113731398	113749396	-	113731398	113753338	A5SS	ENSMUST00000109241.5	known	0.00	0	22	0	22	n	0.00	0	15	0	15	n	0.00	0	42	0	42	n	0.00	0	9	0	9	n	0.00	0	30	0	30	n	0.00	0	25	0	25	n	0.00	0	28	0	28	n	0.09	2	20	2	20	y	0.00	0	13	0	13	n	0.00	0	27	0	27	n	0.00	0	24	0	24	n	0.00	0	21	0	21	n	ENSMUSG00000042364.12	Snx18	chr13	protein_coding	sorting nexin 18
known_NIR_4386	chr13	114425402	114453393	-	114425402;114444426	114444353;114453393	ES	ENSMUST00000022286.8	known	0.01	7	482.0	7	529;435	y	0.01	5	445.0	5	491;399	y	0.04	20	488.0	20	534;442	y	0.02	8	443.0	8	480;406	y	0.02	13	544.0	13	548;540	y	0.01	3	289.0	3	326;252	y	0.01	8	610.5	8	655;566	y	0.03	7	271.0	7	294;248	y	0.01	6	416.0	6	447;385	y	0.01	4	654.5	4	710;599	y	0.00	2	508.5	2	510;507	y	0.02	12	558.0	12	595;521	y	ENSMUSG00000021764.9	Ndufs4	chr13	protein_coding	NADH:ubiquinone oxidoreductase core subunit S4
known_NIR_4387	chr13	114453565	114524495	-	114453565;114488062	114487984;114524495	ES	ENSMUST00000022286.8	known	0.04	16	366.5	16	395;338	y	0.06	21	355.0	21	403;307	y	0.02	9	369.5	9	391;348	y	0.04	14	337.0	14	360;314	y	0.03	17	505.5	17	543;468	y	0.01	3	259.0	3	277;241	y	0.02	9	477.0	9	519;435	y	0.03	7	212.0	7	225;199	y	0.05	18	331.0	18	357;305	y	0.03	19	544.5	19	586;503	y	0.04	17	422.5	17	462;383	y	0.03	14	450.0	14	487;413	y	ENSMUSG00000021764.9	Ndufs4	chr13	protein_coding	NADH:ubiquinone oxidoreductase core subunit S4
known_NIR_4388	chr13	114453565	114524495	-	114488062	114524495	3pMXE	ENSMUST00000225701.2	known	0.05	16	338	16	338	y	0.06	21	307	21	307	y	0.03	9	348	9	348	y	0.04	14	314	14	314	y	0.04	17	468	17	468	y	0.01	3	241	3	241	y	0.02	9	435	9	435	y	0.03	7	199	7	199	y	0.06	18	305	18	305	y	0.04	19	503	19	503	y	0.04	17	383	17	383	y	0.03	14	413	14	413	y	ENSMUSG00000021764.9	Ndufs4	chr13	protein_coding	NADH:ubiquinone oxidoreductase core subunit S4
known_NIR_4389	chr13	114498081	114524495	-	114453565	114524495	A3SS	ENSMUST00000225035.2	known	0.00	0	16	0	16	n	0.00	0	21	0	21	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.10	2	18	2	18	y	0.00	0	19	0	19	n	0.00	0	17	0	17	n	0.00	0	14	0	14	n	ENSMUSG00000021764.9	Ndufs4	chr13	protein_coding	NADH:ubiquinone oxidoreductase core subunit S4
known_NIR_4390	chr13	114498081	114524495	-	114488062	114524495	A3SS	ENSMUST00000022286.8	known	0.00	0	338	0	338	n	0.00	0	307	0	307	n	0.00	0	348	0	348	n	0.00	0	314	0	314	n	0.00	0	468	0	468	n	0.00	0	241	0	241	n	0.00	0	435	0	435	n	0.00	0	199	0	199	n	0.01	2	305	2	305	y	0.00	0	503	0	503	n	0.00	0	383	0	383	n	0.00	0	413	0	413	n	ENSMUSG00000021764.9	Ndufs4	chr13	protein_coding	NADH:ubiquinone oxidoreductase core subunit S4
known_NIR_4391	chr13	114590041	114590816	-	114590341	114590816	A3SS	ENSMUST00000223640.3	known	0.80	8	2	8	2	y	0.00	0	2	0	2	n	0.79	61	16	61	16	y	1.00	5	0	5	0	n	1.00	19	0	19	0	n	0.91	10	1	10	1	n	0.84	16	3	16	3	y	0.83	10	2	10	2	y	0.77	10	3	10	3	y	0.80	8	2	8	2	y	0.75	6	2	6	2	n	0.94	29	2	29	2	y	ENSMUSG00000021765.10	Fst	chr13	protein_coding	follistatin
known_NIR_4392	chr13	114591043	114591657	-	114591046	114591657	A3SS	ENSMUST00000223640.3	known	0.00	0	11	0	11	n	0.22	2	7	2	7	n	0.27	16	44	16	44	y	0.33	1	2	1	2	n	0.19	3	13	3	13	y	0.00	0	13	0	13	n	0.17	3	15	3	15	y	0.55	6	5	6	5	y	0.17	1	5	1	5	n	0.18	2	9	2	9	y	0.33	1	2	1	2	n	0.17	6	30	6	30	y	ENSMUSG00000021765.10	Fst	chr13	protein_coding	follistatin
known_NIR_4393	chr13	114954859	114957338	+	114954859;114955993	114955872;114957338	ES	ENSMUST00000166104.9	known	0.08	26	307.0	26	240;374	y	0.10	23	217.0	23	181;253	y	0.07	20	281.5	20	204;359	y	0.11	36	284.5	36	229;340	y	0.08	33	396.5	33	284;509	y	0.07	12	149.0	12	126;172	y	0.09	33	339.0	33	256;422	y	0.08	14	169.5	14	116;223	y	0.12	36	256.0	36	193;319	y	0.12	48	362.5	48	283;442	y	0.09	27	263.5	27	200;327	y	0.13	52	342.5	52	264;421	y	ENSMUSG00000015536.15	Mocs2	chr13	protein_coding	molybdenum cofactor synthesis 2
known_NIR_4394	chr13	114954859	114957338	+	114955993	114957338	A5SS&ES	ENSMUST00000184672.8	known	0.07	26	374	26	374	y	0.08	23	253	23	253	y	0.05	20	359	20	359	y	0.10	36	340	36	340	y	0.06	33	509	33	509	y	0.07	12	172	12	172	y	0.07	33	422	33	422	y	0.06	14	223	14	223	y	0.10	36	319	36	319	y	0.10	48	442	48	442	y	0.08	27	327	27	327	y	0.11	52	421	52	421	y	ENSMUSG00000015536.15	Mocs2	chr13	protein_coding	molybdenum cofactor synthesis 2
known_NIR_4395	chr13	114955544	114955872	+	114954859	114955872	A5SS	ENSMUST00000166104.9	known	0.00	0	240	0	240	n	0.00	0	181	0	181	n	0.00	1	204	1	204	n	0.00	0	229	0	229	n	0.00	0	284	0	284	n	0.00	0	126	0	126	n	0.00	0	256	0	256	n	0.02	2	116	2	116	y	0.00	0	193	0	193	n	0.01	2	283	2	283	y	0.00	1	200	1	200	n	0.00	1	264	1	264	n	ENSMUSG00000015536.15	Mocs2	chr13	protein_coding	molybdenum cofactor synthesis 2
known_NIR_4396	chr13	114957482	114961747	+	114957482;114961230	114961103;114961747	ES	ENSMUST00000166104.9	known	0.01	3	401.5	3	363;440	y	0.02	6	336.0	6	318;354	y	0.04	16	344.0	16	274;414	y	0.01	3	454.5	3	416;493	y	0.00	0	578.5	0	522;635	n	0.02	3	183.5	3	164;203	y	0.01	6	565.5	6	498;633	y	0.00	1	220.0	1	211;229	n	0.02	8	350.0	8	297;403	y	0.01	8	533.5	8	487;580	y	0.01	3	439.5	3	389;490	y	0.01	3	464.0	3	412;516	y	ENSMUSG00000015536.15	Mocs2	chr13	protein_coding	molybdenum cofactor synthesis 2
known_NIR_4397	chr13	114957482;114961230	114961103;114962694	+	114957482;114961770	114961747;114962694	MXE	ENSMUST00000184046.8	known	0.99	181.5	2.0	363;0	3;1	n	0.98	159.0	4.0	318;0	6;2	n	0.94	137.5	9.5	274;1	16;3	n	0.98	208.0	3.5	416;0	3;4	n	0.99	261.0	1.5	522;0	0;3	n	0.98	82.0	1.5	164;0	3;0	n	0.97	249.0	6.5	498;0	6;7	n	0.97	105.5	3.0	211;0	1;5	n	0.95	148.5	8.0	297;0	8;8	n	0.97	243.5	7.0	487;0	8;6	n	0.98	195.5	4.0	389;2	3;5	y	0.97	206.0	6.0	412;0	3;9	n	ENSMUSG00000015536.15	Mocs2	chr13	protein_coding	molybdenum cofactor synthesis 2
known_NIR_4398	chr13	114957482;114961801	114961747;114962694	+	114957482;114961230	114961103;114962694	MXE	ENSMUST00000184245.8	known	0.03	5.0	181.5	3;7	363;0	n	0.03	5.0	159.0	6;4	318;0	n	0.07	11.0	137.5	16;6	274;1	n	0.01	3.0	208.0	3;3	416;0	n	0.01	3.0	261.0	0;6	522;0	n	0.02	2.0	82.0	3;1	164;0	n	0.02	4.0	249.0	6;2	498;0	n	0.00	0.5	105.5	1;0	211;0	n	0.04	6.5	148.5	8;5	297;0	n	0.03	8.0	243.5	8;8	487;0	n	0.02	4.5	195.5	3;6	389;2	y	0.02	4.5	206.0	3;6	412;0	n	ENSMUSG00000015536.15	Mocs2	chr13	protein_coding	molybdenum cofactor synthesis 2
known_NIR_4399	chr13	114957482;114961897	114961747;114962694	+	114957482;114961230	114961103;114962694	MXE	ENSMUST00000184245.8	known	0.53	207.5	181.5	3;412	363;0	n	0.54	186.5	159.0	6;367	318;0	n	0.57	181.0	137.5	16;346	274;1	n	0.51	213.0	208.0	3;423	416;0	n	0.50	265.0	261.0	0;530	522;0	n	0.55	100.5	82.0	3;198	164;0	n	0.55	304.0	249.0	6;602	498;0	n	0.50	107.0	105.5	1;213	211;0	n	0.57	193.5	148.5	8;379	297;0	n	0.50	248.0	243.5	8;488	487;0	n	0.53	223.0	195.5	3;443	389;2	y	0.56	259.5	206.0	3;516	412;0	n	ENSMUSG00000015536.15	Mocs2	chr13	protein_coding	molybdenum cofactor synthesis 2
known_NIR_4400	chr13	114961230	114962694	+	114961230	114961747	A3SS	ENSMUST00000170985.8	known	0.00	0	440	0	440	n	0.00	0	354	0	354	n	0.00	1	414	1	414	n	0.00	0	493	0	493	n	0.00	0	635	0	635	n	0.00	0	203	0	203	n	0.00	0	633	0	633	n	0.00	0	229	0	229	n	0.00	0	403	0	403	n	0.00	0	580	0	580	n	0.00	2	490	2	490	y	0.00	0	516	0	516	n	ENSMUSG00000015536.15	Mocs2	chr13	protein_coding	molybdenum cofactor synthesis 2
known_NIR_4401	chr13	114961230	114962694	+	114961230;114961897	114961747;114962694	ES	ENSMUST00000166104.9	known	0.00	0	426.0	0	440;412	n	0.00	0	360.5	0	354;367	n	0.00	1	380.0	1	414;346	n	0.00	0	458.0	0	493;423	n	0.00	0	582.5	0	635;530	n	0.00	0	200.5	0	203;198	n	0.00	0	617.5	0	633;602	n	0.00	0	221.0	0	229;213	n	0.00	0	391.0	0	403;379	n	0.00	0	534.0	0	580;488	n	0.00	2	466.5	2	490;443	y	0.00	0	516.0	0	516;516	n	ENSMUSG00000015536.15	Mocs2	chr13	protein_coding	molybdenum cofactor synthesis 2
known_NIR_4402	chr13	114961230;114961770	114961747;114962694	+	114961230	114962694	cassetteExon	ENSMUST00000184245.8	known	1.00	220.5	0	440;1	0	n	1.00	178.0	0	354;2	0	n	1.00	208.5	1	414;3	1	n	1.00	248.5	0	493;4	0	n	1.00	319.0	0	635;3	0	n	1.00	101.5	0	203;0	0	n	1.00	320.0	0	633;7	0	n	1.00	117.0	0	229;5	0	n	1.00	205.5	0	403;8	0	n	1.00	293.0	0	580;6	0	n	0.99	247.5	2	490;5	2	y	1.00	262.5	0	516;9	0	n	ENSMUSG00000015536.15	Mocs2	chr13	protein_coding	molybdenum cofactor synthesis 2
known_NIR_4403	chr13	114961230;114961801	114961747;114962694	+	114961230	114962694	cassetteExon	ENSMUST00000184245.8	known	1.00	223.5	0	440;7	0	n	1.00	179.0	0	354;4	0	n	1.00	210.0	1	414;6	1	n	1.00	248.0	0	493;3	0	n	1.00	320.5	0	635;6	0	n	1.00	102.0	0	203;1	0	n	1.00	317.5	0	633;2	0	n	1.00	114.5	0	229;0	0	n	1.00	204.0	0	403;5	0	n	1.00	294.0	0	580;8	0	n	0.99	248.0	2	490;6	2	y	1.00	261.0	0	516;6	0	n	ENSMUSG00000015536.15	Mocs2	chr13	protein_coding	molybdenum cofactor synthesis 2
known_NIR_4404	chr13	114961770	114962694	+	114961897	114962694	A5SS	ENSMUST00000166104.9	known	0.00	1	412	1	412	n	0.01	2	367	2	367	y	0.01	3	346	3	346	y	0.01	4	423	4	423	y	0.01	3	530	3	530	y	0.00	0	198	0	198	n	0.01	7	602	7	602	y	0.02	5	213	5	213	y	0.02	8	379	8	379	y	0.01	6	488	6	488	y	0.01	5	443	5	443	y	0.02	9	516	9	516	y	ENSMUSG00000015536.15	Mocs2	chr13	protein_coding	molybdenum cofactor synthesis 2
known_NIR_4405	chr13	114961801	114962694	+	114961770	114962694	A5SS	ENSMUST00000184046.8	known	0.88	7	1	7	1	n	0.67	4	2	4	2	n	0.67	6	3	6	3	n	0.43	3	4	3	4	n	0.67	6	3	6	3	n	1.00	1	0	1	0	n	0.22	2	7	2	7	n	0.00	0	5	0	5	n	0.38	5	8	5	8	y	0.57	8	6	8	6	y	0.55	6	5	6	5	y	0.40	6	9	6	9	y	ENSMUSG00000015536.15	Mocs2	chr13	protein_coding	molybdenum cofactor synthesis 2
known_NIR_4406	chr13	114961801	114962694	+	114961897	114962694	A5SS	ENSMUST00000166104.9	known	0.02	7	412	7	412	y	0.01	4	367	4	367	y	0.02	6	346	6	346	y	0.01	3	423	3	423	y	0.01	6	530	6	530	y	0.01	1	198	1	198	n	0.00	2	602	2	602	y	0.00	0	213	0	213	n	0.01	5	379	5	379	y	0.02	8	488	8	488	y	0.01	6	443	6	443	y	0.01	6	516	6	516	y	ENSMUSG00000015536.15	Mocs2	chr13	protein_coding	molybdenum cofactor synthesis 2
known_NIR_4407	chr13	114961897	114962741	+	114961897	114962694	A3SS	ENSMUST00000166104.9	known	0.02	8	412	8	412	y	0.01	3	367	3	367	y	0.00	0	346	0	346	n	0.00	2	423	2	423	y	0.01	5	530	5	530	y	0.00	0	198	0	198	n	0.01	9	602	9	602	y	0.00	0	213	0	213	n	0.00	0	379	0	379	n	0.01	5	488	5	488	y	0.01	5	443	5	443	y	0.01	3	516	3	516	y	ENSMUSG00000015536.15	Mocs2	chr13	protein_coding	molybdenum cofactor synthesis 2
known_NIR_4408	chr13	114962817	114965014	+	114962817	114964825	A3SS	ENSMUST00000166104.9	known	0.00	0	398	0	398	n	0.00	0	390	0	390	n	0.00	0	363	0	363	n	0.05	19	350	19	350	y	0.04	19	503	19	503	y	0.00	0	215	0	215	n	0.05	25	524	25	524	y	0.00	0	220	0	220	n	0.00	0	366	0	366	n	0.00	0	465	0	465	n	0.00	0	442	0	442	n	0.03	14	450	14	450	y	ENSMUSG00000015536.15	Mocs2	chr13	protein_coding	molybdenum cofactor synthesis 2
known_NIR_4409	chr13	115146249	115148696	-	115143605	115148696	A3SS	ENSMUST00000061673.9	known	0.07	1	13	1	13	n	0.00	0	10	0	10	n	0.00	0	23	0	23	n	0.00	0	13	0	13	n	0.04	1	24	1	24	n	0.12	2	15	2	15	y	0.00	0	21	0	21	n	0.00	0	17	0	17	n	0.25	3	9	3	9	y	0.00	0	19	0	19	n	0.11	1	8	1	8	n	0.00	0	16	0	16	n	ENSMUSG00000042284.11	Itga1	chr13	protein_coding	integrin alpha 1
known_NIR_4410	chr13	115185939	115238007	-	115225497	115238007	3pMXE	ENSMUST00000224997.2	known	1.00	6	0	6	0	n	0.60	3	2	3	2	n	1.00	7	0	7	0	n	1.00	11	0	11	0	n	0.94	15	1	15	1	n	1.00	7	0	7	0	n	0.59	10	7	10	7	y	1.00	9	0	9	0	n	1.00	5	0	5	0	n	1.00	11	0	11	0	n	0.82	9	2	9	2	y	0.94	15	1	15	1	n	ENSMUSG00000114470.2	Gm49395	chr13	protein_coding	predicted gene, 49395
known_NIR_4411	chr13	115225497	115225730	-	115225497	115238007	A5SS	ENSMUST00000224495.2	known	1.00	86	0	86	0	n	0.98	83	2	83	2	y	1.00	154	0	154	0	n	1.00	79	0	79	0	n	0.99	83	1	83	1	n	1.00	78	0	78	0	n	0.93	94	7	94	7	y	1.00	59	0	59	0	n	1.00	52	0	52	0	n	1.00	94	0	94	0	n	0.97	65	2	65	2	y	0.98	58	1	58	1	n	ENSMUSG00000114470.2	Gm49395	chr13	protein_coding	predicted gene, 49395
known_NIR_4412	chr13	115226840	115238007	-	115185939	115238007	A3SS	ENSMUST00000061673.9	known	0.00	0	6	0	6	n	0.40	2	3	2	3	n	0.00	0	7	0	7	n	0.15	2	11	2	11	y	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.33	5	10	5	10	y	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.21	3	11	3	11	y	0.00	0	9	0	9	n	0.06	1	15	1	15	n	ENSMUSG00000042284.11	Itga1	chr13	protein_coding	integrin alpha 1
known_NIR_4413	chr13	115226840	115238007	-	115225497	115238007	A3SS	ENSMUST00000224495.2	known	-	-	-	-	-	-	0.50	2	2	2	2	n	-	-	-	-	-	-	1.00	2	0	2	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.42	5	7	5	7	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	ENSMUSG00000114470.2	Gm49395	chr13	protein_coding	predicted gene, 49395
known_NIR_4414	chr13	119506681	119508932	-	119506681	119518212	A5SS	ENSMUST00000069902.13	known	0.85	22	4	22	4	y	0.97	33	1	33	1	n	0.96	53	2	53	2	y	0.93	55	4	55	4	y	0.95	69	4	69	4	y	0.98	41	1	41	1	n	0.94	88	6	88	6	y	0.89	34	4	34	4	y	1.00	62	0	62	0	n	0.89	67	8	67	8	y	0.94	46	3	46	3	y	0.94	63	4	63	4	y	ENSMUSG00000025453.19	Nnt	chr13	protein_coding	nicotinamide nucleotide transhydrogenase
known_NIR_4415	chr13	119511310	119518212	-	119506681	119518212	A3SS	ENSMUST00000069902.13	known	0.85	22	4	22	4	y	0.96	22	1	22	1	n	0.95	36	2	36	2	y	0.93	55	4	55	4	y	0.94	62	4	62	4	y	0.97	37	1	37	1	n	0.92	73	6	73	6	y	0.89	33	4	33	4	y	1.00	19	0	19	0	n	0.88	59	8	59	8	y	0.92	33	3	33	3	y	0.91	41	4	41	4	y	ENSMUSG00000025453.19	Nnt	chr13	protein_coding	nicotinamide nucleotide transhydrogenase
known_NIR_4416	chr13	119565696	119566696	+	119565176	119566696	A5SS	ENSMUST00000109203.9	known	0.62	20	12	20	12	y	0.45	14	17	14	17	y	0.48	40	44	40	44	y	0.62	31	19	31	19	y	0.56	28	22	28	22	y	0.62	24	15	24	15	y	0.43	15	20	15	20	y	0.46	11	13	11	13	y	0.48	14	15	14	15	y	0.56	22	17	22	17	y	0.45	15	18	15	18	y	0.63	27	16	27	16	y	ENSMUSG00000025451.16	Paip1	chr13	protein_coding	polyadenylate binding protein-interacting protein 1
known_NIR_4417	chr13	119565948	119566696	+	119565176	119566696	A5SS	ENSMUST00000109203.9	known	0.60	18	12	18	12	y	0.59	24	17	24	17	y	0.56	55	44	55	44	y	0.68	41	19	41	19	y	0.69	49	22	49	22	y	0.64	27	15	27	15	y	0.53	23	20	23	20	y	0.48	12	13	12	13	y	0.52	16	15	16	15	y	0.67	35	17	35	17	y	0.57	24	18	24	18	y	0.71	40	16	40	16	y	ENSMUSG00000025451.16	Paip1	chr13	protein_coding	polyadenylate binding protein-interacting protein 1
known_NIR_4418	chr13	119565948	119566696	+	119565696	119566696	A5SS	ENSMUST00000026520.14	known	0.47	18	20	18	20	y	0.63	24	14	24	14	y	0.58	55	40	55	40	y	0.57	41	31	41	31	y	0.64	49	28	49	28	y	0.53	27	24	27	24	y	0.61	23	15	23	15	y	0.52	12	11	12	11	y	0.53	16	14	16	14	y	0.61	35	22	35	22	y	0.62	24	15	24	15	y	0.60	40	27	40	27	y	ENSMUSG00000025451.16	Paip1	chr13	protein_coding	polyadenylate binding protein-interacting protein 1
known_NIR_4419	chr13	119584295	119586440	+	119584376	119586440	A5SS	ENSMUST00000109203.9	known	0.07	15	200	15	200	y	0.01	3	198	3	198	y	0.03	10	350	10	350	y	0.03	7	230	7	230	y	0.03	8	240	8	240	y	0.06	9	132	9	132	y	0.02	5	290	5	290	y	0.02	3	143	3	143	y	0.02	3	139	3	139	y	0.07	19	243	19	243	y	0.03	7	197	7	197	y	0.04	12	260	12	260	y	ENSMUSG00000025451.16	Paip1	chr13	protein_coding	polyadenylate binding protein-interacting protein 1
known_NIR_4420	chr13	119599655	119601101	+	119599655	119602547	A3SS	ENSMUST00000026519.10	known	0.38	13	21	13	21	y	0.21	6	22	6	22	y	0.32	17	36	17	36	y	0.10	4	35	4	35	y	0.35	15	28	15	28	y	0.19	6	25	6	25	y	0.28	8	21	8	21	y	0.39	7	11	7	11	y	0.05	1	21	1	21	n	0.13	4	27	4	27	y	0.34	12	23	12	23	y	0.38	18	30	18	30	y	ENSMUSG00000062822.9	4833420G17Rik	chr13	protein_coding	RIKEN cDNA 4833420G17 gene
known_NIR_4421	chr13	119599655	119602610	+	119599655	119601101	A3SS&ES	ENSMUST00000224312.2	known	0.35	7	13	7	13	y	0.33	3	6	3	6	n	0.32	8	17	8	17	y	0.67	8	4	8	4	y	0.40	10	15	10	15	y	0.45	5	6	5	6	y	0.67	16	8	16	8	y	0.30	3	7	3	7	y	0.67	2	1	2	1	n	0.80	16	4	16	4	y	0.29	5	12	5	12	y	0.31	8	18	8	18	y	ENSMUSG00000062822.9	4833420G17Rik	chr13	protein_coding	RIKEN cDNA 4833420G17 gene
known_NIR_4422	chr13	119599655	119602610	+	119599655	119602547	A3SS	ENSMUST00000026519.10	known	0.25	7	21	7	21	y	0.12	3	22	3	22	y	0.18	8	36	8	36	y	0.19	8	35	8	35	y	0.26	10	28	10	28	y	0.17	5	25	5	25	y	0.43	16	21	16	21	y	0.21	3	11	3	11	y	0.09	2	21	2	21	y	0.37	16	27	16	27	y	0.18	5	23	5	23	y	0.21	8	30	8	30	y	ENSMUSG00000062822.9	4833420G17Rik	chr13	protein_coding	RIKEN cDNA 4833420G17 gene
known_NIR_4423	chr13	119599655	119602610	+	119599655;119601226	119601101;119602610	ES	ENSMUST00000225186.2	known	0.52	7	6.5	7	13;0	n	0.50	3	3.0	3	6;0	n	0.44	8	10.0	8	17;3	y	0.76	8	2.5	8	4;1	n	0.57	10	7.5	10	15;0	n	0.62	5	3.0	5	6;0	n	0.76	16	5.0	16	8;2	y	0.40	3	4.5	3	7;2	y	0.80	2	0.5	2	1;0	n	0.89	16	2.0	16	4;0	n	0.40	5	7.5	5	12;3	y	0.44	8	10.0	8	18;2	y	ENSMUSG00000062822.9	4833420G17Rik	chr13	protein_coding	RIKEN cDNA 4833420G17 gene
known_NIR_4424	chr13	119601226	119601816	+	119601226	119602610	A3SS	ENSMUST00000225186.2	known	1.00	16	0	16	0	n	1.00	6	0	6	0	n	0.57	4	3	4	3	n	0.80	4	1	4	1	n	1.00	10	0	10	0	n	1.00	1	0	1	0	n	0.78	7	2	7	2	n	0.50	2	2	2	2	n	1.00	3	0	3	0	n	1.00	6	0	6	0	n	0.57	4	3	4	3	n	0.83	10	2	10	2	y	ENSMUSG00000062822.9	4833420G17Rik	chr13	protein_coding	RIKEN cDNA 4833420G17 gene
known_NIR_4425	chr13	119610730	119611369	+	119610492	119611369	A5SS	ENSMUST00000026519.10	known	0.30	16	38	16	38	y	0.45	20	24	20	24	y	0.44	29	37	29	37	y	0.21	12	46	12	46	y	0.32	23	50	23	50	y	0.47	14	16	14	16	y	0.33	21	42	21	42	y	0.33	8	16	8	16	y	0.42	14	19	14	19	y	0.15	14	77	14	77	y	0.22	11	39	11	39	y	0.26	18	50	18	50	y	ENSMUSG00000062822.9	4833420G17Rik	chr13	protein_coding	RIKEN cDNA 4833420G17 gene
known_NIR_4426	chr13	119625530	119629170	+	119624736	119629170	A5SS	ENSMUST00000176171.9	known	0.92	12	1	12	1	n	1.00	21	0	21	0	n	0.87	13	2	13	2	y	0.96	52	2	52	2	y	0.91	20	2	20	2	y	0.95	21	1	21	1	n	1.00	24	0	24	0	n	0.94	16	1	16	1	n	0.57	4	3	4	3	n	1.00	20	0	20	0	n	1.00	5	0	5	0	n	0.91	10	1	10	1	n	ENSMUSG00000074634.13	Tmem267	chr13	protein_coding	transmembrane protein 267
known_NIR_4427	chr13	120152049	120156525	+	120152049	120156426	A3SS	ENSMUST00000225543.2	known	0.73	35	13	35	13	y	0.82	14	3	14	3	y	0.86	102	17	102	17	y	0.76	47	15	47	15	y	0.86	243	38	243	38	y	0.91	126	13	126	13	y	0.85	126	22	126	22	y	0.86	106	17	106	17	y	0.89	64	8	64	8	y	0.91	123	12	123	12	y	0.79	73	19	73	19	y	0.84	84	16	84	16	y	ENSMUSG00000093930.3	Hmgcs1	chr13	protein_coding	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1
known_NIR_4428	chr13	120152049	120161200	+	120152049;120156583	120156426;120161200	ES	ENSMUST00000225543.2	known	0.65	86	47.0	86	13;81	y	0.77	43	13.0	43	3;23	y	0.75	278	92.0	278	17;167	y	0.62	94	58.0	94	15;101	y	0.59	379	265.5	379	38;493	y	0.65	243	130.5	243	13;248	y	0.63	208	123.0	208	22;224	y	0.64	198	111.5	198	17;206	y	0.57	84	63.5	84	8;119	y	0.60	175	115.0	175	12;218	y	0.64	112	63.5	112	19;108	y	0.68	164	77.5	164	16;139	y	ENSMUSG00000093930.3	Hmgcs1	chr13	protein_coding	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1
known_NIR_4429	chr13	120152049;120156583	120156525;120161200	+	120152049	120161200	cassetteExon	ENSMUST00000179869.3	known	0.40	58.0	86	35;81	86	y	0.30	18.5	43	14;23	43	y	0.33	134.5	278	102;167	278	y	0.44	74.0	94	47;101	94	y	0.49	368.0	379	243;493	379	y	0.43	187.0	243	126;248	243	y	0.46	175.0	208	126;224	208	y	0.44	156.0	198	106;206	198	y	0.52	91.5	84	64;119	84	y	0.49	170.5	175	123;218	175	y	0.45	90.5	112	73;108	112	y	0.40	111.5	164	84;139	164	y	ENSMUSG00000093930.3	Hmgcs1	chr13	protein_coding	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1
known_NIR_4430	chr13	120251823	120252041	-	120251823	120252315	A5SS	ENSMUST00000177916.8	known	0.80	4	1	4	1	n	1.00	2	0	2	0	n	0.81	17	4	17	4	y	1.00	3	0	3	0	n	1.00	11	0	11	0	n	1.00	3	0	3	0	n	1.00	3	0	3	0	n	0.75	3	1	3	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.67	4	2	4	2	n	ENSMUSG00000094870.9	Zfp131	chr13	protein_coding	zinc finger protein 131
known_NIR_4431	chr13	120251823	120252041	-	120251823	120252356	A5SS	ENSMUST00000223722.2	known	0.50	4	4	4	4	n	1.00	2	0	2	0	n	0.77	17	5	17	5	y	0.38	3	5	3	5	n	0.85	11	2	11	2	y	0.50	3	3	3	3	n	0.60	3	2	3	2	n	1.00	3	0	3	0	n	0.33	1	2	1	2	n	1.00	1	0	1	0	n	0.00	0	4	0	4	n	0.40	4	6	4	6	y	ENSMUSG00000094870.9	Zfp131	chr13	protein_coding	zinc finger protein 131
known_NIR_4432	chr13	12205290	12210124	-	12205290;12208696	12208500;12210124	ES	ENSMUST00000099856.6	known	0.00	0	4.0	0	4;4	n	0.00	0	7.0	0	8;6	n	0.00	0	8.0	0	11;5	n	0.00	0	6.0	0	6;6	n	0.00	0	10.0	0	14;6	n	0.00	0	5.5	0	7;4	n	0.00	0	6.5	0	6;7	n	0.00	0	1.0	0	1;1	n	0.00	0	5.0	0	4;6	n	0.00	0	6.5	0	8;5	n	0.19	2	8.5	2	6;11	y	0.14	1	6.0	1	3;9	n	ENSMUSG00000021311.10	Mtr	chr13	protein_coding	5-methyltetrahydrofolate-homocysteine methyltransferase
known_NIR_4433	chr13	12262871	12265488	-	12262871;12264800	12264731;12265488	ES	ENSMUST00000099856.6	known	0.57	2	1.5	2	1;2	n	0.67	3	1.5	3	1;2	n	0.88	7	1.0	7	2;0	n	0.43	3	4.0	3	5;3	y	0.00	0	4.5	0	4;5	n	0.00	0	1.5	0	2;1	n	0.00	0	4.0	0	3;5	n	0.00	0	1.5	0	1;2	n	0.00	0	1.0	0	2;0	n	0.00	0	4.0	0	3;5	n	0.00	0	2.0	0	3;1	n	0.00	0	3.0	0	3;3	n	ENSMUSG00000021311.10	Mtr	chr13	protein_coding	5-methyltetrahydrofolate-homocysteine methyltransferase
known_NIR_4434	chr13	12467659	12468139	-	12467659	12468166	A5SS	ENSMUST00000124888.8	known	0.04	9	247	9	247	y	0.06	9	154	9	154	y	0.05	12	238	12	238	y	0.07	21	286	21	286	y	0.11	29	246	29	246	y	0.09	11	117	11	117	y	0.12	29	207	29	207	y	0.12	18	133	18	133	y	0.12	21	156	21	156	y	0.06	16	260	16	260	y	0.05	10	176	10	176	y	0.09	18	188	18	188	y	ENSMUSG00000057554.14	Lgals8	chr13	protein_coding	lectin, galactose binding, soluble 8
known_NIR_4435	chr13	12469826	12474055	-	12469826	12471225	5pMXE	ENSMUST00000155871.8	known	0.01	2	272	2	272	y	0.00	0	213	0	213	n	0.02	5	286	5	286	y	0.01	5	365	5	365	y	0.01	2	343	2	343	y	0.00	0	141	0	141	n	0.01	4	266	4	266	y	0.00	1	208	1	208	n	0.01	3	221	3	221	y	0.00	1	333	1	333	n	0.01	2	186	2	186	y	0.00	1	269	1	269	n	ENSMUSG00000057554.14	Lgals8	chr13	protein_coding	lectin, galactose binding, soluble 8
known_NIR_4436	chr13	12469826	12474055	-	12469826;12471313	12471225;12474055	ES	ENSMUST00000124888.8	known	0.01	2	233.0	2	272;194	y	0.00	0	179.0	0	213;145	n	0.02	5	257.5	5	286;229	y	0.02	5	311.0	5	365;257	y	0.01	2	309.0	2	343;275	y	0.00	0	128.0	0	141;115	n	0.02	4	245.5	4	266;225	y	0.01	1	165.5	1	208;123	n	0.02	3	196.0	3	221;171	y	0.00	1	278.5	1	333;224	n	0.01	2	168.0	2	186;150	y	0.00	1	234.5	1	269;200	n	ENSMUSG00000057554.14	Lgals8	chr13	protein_coding	lectin, galactose binding, soluble 8
known_NIR_4437	chr13	12474197	12476122	-	12474197	12476308	A5SS	ENSMUST00000124888.8	known	0.53	66	59	66	59	y	0.55	54	45	54	45	y	0.57	95	71	95	71	y	0.56	97	77	97	77	y	0.53	106	95	106	95	y	0.54	53	46	53	46	y	0.64	91	52	91	52	y	0.57	58	43	58	43	y	0.56	57	45	57	45	y	0.62	115	69	115	69	y	0.55	68	56	68	56	y	0.60	85	57	85	57	y	ENSMUSG00000057554.14	Lgals8	chr13	protein_coding	lectin, galactose binding, soluble 8
known_NIR_4438	chr13	12619350	12621716	+	12619350	12620584	3pMXE	ENSMUST00000221560.2	known	0.76	87	27	87	27	y	0.63	72	42	72	42	y	0.90	270	30	270	30	y	0.84	136	25	136	25	y	0.85	216	37	216	37	y	0.92	176	16	176	16	y	0.73	128	47	128	47	y	0.86	170	27	170	27	y	0.70	103	44	103	44	y	0.79	112	30	112	30	y	0.73	93	34	93	34	y	0.71	90	36	90	36	y	ENSMUSG00000057069.8	Ero1b	chr13	protein_coding	endoplasmic reticulum oxidoreductase 1 beta
known_NIR_4439	chr13	12619350	12624457	+	12619350	12620584	3pMXE	ENSMUST00000221560.2	known	0.04	1	27	1	27	n	0.05	2	42	2	42	y	0.00	0	30	0	30	n	0.00	0	25	0	25	n	0.00	0	37	0	37	n	0.00	0	16	0	16	n	0.00	0	47	0	47	n	0.00	0	27	0	27	n	0.14	7	44	7	44	y	0.06	2	30	2	30	y	0.15	6	34	6	34	y	0.05	2	36	2	36	y	ENSMUSG00000057069.8	Ero1b	chr13	protein_coding	endoplasmic reticulum oxidoreductase 1 beta
known_NIR_4440	chr13	12619350	12624457	+	12619350	12621716	3pMXE	ENSMUST00000071973.8	known	0.01	1	87	1	87	n	0.03	2	72	2	72	y	0.00	0	270	0	270	n	0.00	0	136	0	136	n	0.00	0	216	0	216	n	0.00	0	176	0	176	n	0.00	0	128	0	128	n	0.00	0	170	0	170	n	0.06	7	103	7	103	y	0.02	2	112	2	112	y	0.06	6	93	6	93	y	0.02	2	90	2	90	y	ENSMUSG00000057069.8	Ero1b	chr13	protein_coding	endoplasmic reticulum oxidoreductase 1 beta
known_NIR_4441	chr13	12630738;12632388	12632144;12632614	-	12630738	12632614	cassetteExon	ENSMUST00000220758.2	known	0.00	0.0	3	0;0	3	n	0.33	0.5	1	0;1	1	n	0.25	2.0	6	1;3	6	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0.0	2	0;0	2	n	0.45	2.5	3	1;4	3	n	-	-	-	-	-	-	0.00	0.0	1	0;0	1	n	0.33	0.5	1	0;1	1	n	0.25	2.0	6	2;2	6	y	0.00	0.0	1	0;0	1	n	ENSMUSG00000097715.3	Gpr137b-ps	chr13	transcribed_unprocessed_pseudogene	G protein-coupled receptor 137B, pseudogene
known_NIR_4442	chr13	14141042	14145375	+	14141042	14145352	A3SS	ENSMUST00000099747.5	known	0.00	0	13	0	13	n	0.15	2	11	2	11	y	0.00	0	24	0	24	n	0.00	0	31	0	31	n	0.00	0	38	0	38	n	0.00	0	16	0	16	n	0.00	0	37	0	37	n	0.00	0	16	0	16	n	0.00	0	32	0	32	n	0.00	0	24	0	24	n	0.07	1	14	1	14	n	0.00	0	36	0	36	n	ENSMUSG00000039242.11	B3galnt2	chr13	protein_coding	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2
known_NIR_4443	chr13	14145452	14155186	+	14145452	14150023	3pMXE	ENSMUST00000223307.2	known	0.05	1	20	1	20	n	0.08	2	22	2	22	y	0.00	0	37	0	37	n	0.08	3	36	3	36	y	0.05	4	69	4	69	y	0.00	0	19	0	19	n	0.00	0	47	0	47	n	0.10	2	18	2	18	y	0.00	0	37	0	37	n	0.08	4	45	4	45	y	0.08	2	22	2	22	y	0.09	6	59	6	59	y	ENSMUSG00000039242.11	B3galnt2	chr13	protein_coding	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2
known_NIR_4444	chr13	14145452	14155186	+	14145452;14150219	14150023;14155186	ES	ENSMUST00000099747.5	known	0.04	1	25.0	1	20;30	n	0.09	2	20.5	2	22;19	y	0.00	0	35.5	0	37;34	n	0.08	3	34.0	3	36;32	y	0.07	4	55.0	4	69;41	y	0.00	0	18.0	0	19;17	n	0.00	0	40.0	0	47;33	n	0.09	2	21.5	2	18;25	y	0.00	0	27.5	0	37;18	n	0.08	4	46.0	4	45;47	y	0.08	2	24.0	2	22;26	y	0.09	6	57.5	6	59;56	y	ENSMUSG00000039242.11	B3galnt2	chr13	protein_coding	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2
known_NIR_4445	chr13	14145452	14161938	+	14145452	14150023	3pMXE	ENSMUST00000223307.2	known	0.00	0	20	0	20	n	0.00	0	22	0	22	n	0.00	0	37	0	37	n	0.03	1	36	1	36	n	0.01	1	69	1	69	n	0.00	0	19	0	19	n	0.00	0	47	0	47	n	0.10	2	18	2	18	y	0.00	0	37	0	37	n	0.00	0	45	0	45	n	0.00	0	22	0	22	n	0.00	0	59	0	59	n	ENSMUSG00000039242.11	B3galnt2	chr13	protein_coding	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2
known_NIR_4446	chr13	14145452;14150219	14150023;14161938	+	14145452	14161938	cassetteExon	ENSMUST00000222110.2	known	1.00	10.0	0	20;0	0	n	1.00	11.0	0	22;0	0	n	1.00	20.0	0	37;3	0	n	0.95	18.5	1	36;1	1	n	0.97	34.5	1	69;0	1	n	1.00	9.5	0	19;0	0	n	1.00	25.0	0	47;3	0	n	0.84	10.5	2	18;3	2	y	1.00	20.0	0	37;3	0	n	1.00	23.5	0	45;2	0	n	1.00	12.5	0	22;3	0	n	1.00	30.5	0	59;2	0	n	ENSMUSG00000039242.11	B3galnt2	chr13	protein_coding	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2
known_NIR_4447	chr13	14145452;14150219	14150023;14161938	+	14145452;14155281	14155186;14161938	MXE	ENSMUST00000223483.2	known	0.40	10.0	15.0	20;0	1;29	n	0.54	11.0	9.5	22;0	2;17	n	0.62	20.0	12.5	37;3	0;25	n	0.45	18.5	22.5	36;1	3;42	n	0.45	34.5	43.0	69;0	4;82	n	0.53	9.5	8.5	19;0	0;17	n	0.52	25.0	23.0	47;3	0;46	n	0.33	10.5	21.0	18;3	2;40	y	0.65	20.0	11.0	37;3	0;22	n	0.44	23.5	30.5	45;2	4;57	y	0.47	12.5	14.0	22;3	2;26	y	0.52	30.5	28.0	59;2	6;50	y	ENSMUSG00000039242.11	B3galnt2	chr13	protein_coding	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2
known_NIR_4448	chr13	14145452;14155281	14155186;14161938	+	14145452	14161938	cassetteExon	ENSMUST00000222110.2	known	1.00	15.0	0	1;29	0	n	1.00	9.5	0	2;17	0	n	1.00	12.5	0	0;25	0	n	0.96	22.5	1	3;42	1	n	0.98	43.0	1	4;82	1	n	1.00	8.5	0	0;17	0	n	1.00	23.0	0	0;46	0	n	0.91	21.0	2	2;40	2	y	1.00	11.0	0	0;22	0	n	1.00	30.5	0	4;57	0	n	1.00	14.0	0	2;26	0	n	1.00	28.0	0	6;50	0	n	ENSMUSG00000039242.11	B3galnt2	chr13	protein_coding	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2
known_NIR_4449	chr13	14150219	14161938	+	14150219;14155281	14155186;14161938	ES	ENSMUST00000099747.5	known	0.00	0	29.5	0	30;29	n	0.00	0	18.0	0	19;17	n	0.09	3	29.5	3	34;25	y	0.03	1	37.0	1	32;42	n	0.00	0	61.5	0	41;82	n	0.00	0	17.0	0	17;17	n	0.07	3	39.5	3	33;46	y	0.08	3	32.5	3	25;40	y	0.13	3	20.0	3	18;22	y	0.04	2	52.0	2	47;57	y	0.10	3	26.0	3	26;26	y	0.04	2	53.0	2	56;50	y	ENSMUSG00000039242.11	B3galnt2	chr13	protein_coding	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2
known_NIR_4450	chr13	14165452	14165995	+	14165452	14165954	A3SS	ENSMUST00000099747.5	known	0.06	2	32	2	32	y	0.14	4	24	4	24	y	0.11	4	33	4	33	y	0.10	4	37	4	37	y	0.13	8	52	8	52	y	0.19	5	22	5	22	y	0.10	4	36	4	36	y	0.00	0	33	0	33	n	0.00	0	17	0	17	n	0.15	7	41	7	41	y	0.11	3	25	3	25	y	0.05	2	37	2	37	y	ENSMUSG00000039242.11	B3galnt2	chr13	protein_coding	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2
known_NIR_4451	chr13	14175763	14178118	-	14175763	14178128	A5SS	ENSMUST00000159893.8	known	0.17	8	40	8	40	y	0.33	16	32	16	32	y	0.15	10	55	10	55	y	0.41	14	20	14	20	y	0.44	24	31	24	31	y	0.12	4	29	4	29	y	0.40	18	27	18	27	y	0.12	4	29	4	29	y	0.13	7	47	7	47	y	0.27	21	58	21	58	y	0.20	9	35	9	35	y	0.04	2	51	2	51	y	ENSMUSG00000039233.13	Tbce	chr13	protein_coding	tubulin-specific chaperone E
known_NIR_4452	chr13	14194472;14202367	14202283;14203861	-	14194472	14203861	cassetteExon	ENSMUST00000159893.8	known	0.82	23.0	5	17;29	5	y	0.76	15.5	5	16;15	5	y	0.84	54.5	10	59;50	10	y	0.91	31.5	3	31;32	3	y	0.78	35.0	10	37;33	10	y	0.58	12.5	9	10;15	9	y	0.84	31.5	6	26;37	6	y	0.87	20.5	3	23;18	3	y	0.83	24.0	5	17;31	5	y	0.91	41.5	4	42;41	4	y	0.80	20.0	5	19;21	5	y	0.87	40.0	6	38;42	6	y	ENSMUSG00000039233.13	Tbce	chr13	protein_coding	tubulin-specific chaperone E
known_NIR_4453	chr13	14229040	14232381	-	14229040;14229805	14229735;14232381	ES	ENSMUST00000170957.3	known	0.00	0	22.5	0	25;20	n	0.30	4	9.5	4	7;12	y	0.04	1	24.0	1	23;25	n	0.00	0	17.5	0	20;15	n	0.09	2	21.0	2	17;25	y	0.00	0	10.5	0	9;12	n	0.00	0	22.5	0	23;22	n	0.06	1	15.5	1	13;18	n	0.11	2	16.5	2	21;12	y	0.07	2	27.0	2	30;24	y	0.06	1	16.0	1	15;17	n	0.00	0	25.0	0	31;19	n	ENSMUSG00000021302.11	Ggps1	chr13	protein_coding	geranylgeranyl diphosphate synthase 1
known_NIR_4454	chr13	14229040;14229805	14229735;14237791	-	14229040;14234042	14232381;14237791	MXE	ENSMUST00000221713.2	known	1.00	12.5	0.0	25;0	0;0	n	0.50	3.5	3.5	7;0	4;3	n	0.85	11.5	2.0	23;0	1;3	n	1.00	12.0	0.0	20;4	0;0	n	0.83	10.0	2.0	17;3	2;2	y	1.00	4.5	0.0	9;0	0;0	n	0.92	11.5	1.0	23;0	0;2	n	0.81	6.5	1.5	13;0	1;2	n	0.85	11.0	2.0	21;1	2;2	n	0.85	17.5	3.0	30;5	2;4	y	0.94	7.5	0.5	15;0	1;0	n	0.92	18.0	1.5	31;5	0;3	n	ENSMUSG00000021302.11	Ggps1	chr13	protein_coding	geranylgeranyl diphosphate synthase 1
known_NIR_4455	chr13	14229040;14232473	14232381;14237791	-	14229040;14229805	14229735;14237791	MXE	ENSMUST00000222687.2	known	0.26	4.5	12.5	0;9	25;0	n	0.56	4.5	3.5	4;5	7;0	n	0.42	8.5	11.5	1;16	23;0	n	0.23	3.5	12.0	0;7	20;4	n	0.43	7.5	10.0	2;13	17;3	y	0.40	3.0	4.5	0;6	9;0	n	0.30	5.0	11.5	0;10	23;0	n	0.24	2.0	6.5	1;3	13;0	n	0.35	6.0	11.0	2;10	21;1	n	0.31	8.0	17.5	2;14	30;5	y	0.38	4.5	7.5	1;8	15;0	n	0.20	4.5	18.0	0;9	31;5	n	ENSMUSG00000021302.11	Ggps1	chr13	protein_coding	geranylgeranyl diphosphate synthase 1
known_NIR_4456	chr13	14229805	14237791	-	14229805;14232473	14232381;14237791	ES	ENSMUST00000170957.3	known	0.00	0	14.5	0	20;9	n	0.00	0	8.5	0	12;5	n	0.00	0	20.5	0	25;16	n	0.27	4	11.0	4	15;7	y	0.14	3	19.0	3	25;13	y	0.00	0	9.0	0	12;6	n	0.00	0	16.0	0	22;10	n	0.00	0	10.5	0	18;3	n	0.08	1	11.0	1	12;10	n	0.21	5	19.0	5	24;14	y	0.00	0	12.5	0	17;8	n	0.26	5	14.0	5	19;9	y	ENSMUSG00000021302.11	Ggps1	chr13	protein_coding	geranylgeranyl diphosphate synthase 1
known_NIR_4457	chr13	14232473	14233509	-	14232473	14237791	A5SS	ENSMUST00000170957.3	known	0.18	2	9	2	9	y	0.00	0	5	0	5	n	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.17	2	10	2	10	y	0.40	2	3	2	3	n	0.00	0	10	0	10	n	0.22	4	14	4	14	y	0.00	0	8	0	8	n	0.25	3	9	3	9	y	ENSMUSG00000021302.11	Ggps1	chr13	protein_coding	geranylgeranyl diphosphate synthase 1
known_NIR_4458	chr13	14232473	14233904	-	14233796	14233904	3pMXE	ENSMUST00000221406.2	known	0.33	1	2	1	2	n	0.75	3	1	3	1	n	0.75	9	3	9	3	y	1.00	13	0	13	0	n	0.67	4	2	4	2	n	0.75	3	1	3	1	n	0.75	6	2	6	2	n	0.69	9	4	9	4	y	0.50	3	3	3	3	n	1.00	4	0	4	0	n	1.00	5	0	5	0	n	0.50	1	1	1	1	n	ENSMUSG00000021302.11	Ggps1	chr13	protein_coding	geranylgeranyl diphosphate synthase 1
known_NIR_4459	chr13	14232473;14233796	14233509;14233904	-	14232473	14233904	cassetteExon	ENSMUST00000222164.2	known	0.67	2.0	1	2;2	1	n	0.14	0.5	3	0;1	3	n	0.14	1.5	9	0;3	9	n	0.00	0.0	13	0;0	13	n	0.20	1.0	4	0;2	4	n	0.14	0.5	3	0;1	3	n	0.25	2.0	6	2;2	6	y	0.25	3.0	9	2;4	9	y	0.33	1.5	3	0;3	3	n	0.33	2.0	4	4;0	4	n	0.00	0.0	5	0;0	5	n	0.67	2.0	1	3;1	1	n	ENSMUSG00000021302.11	Ggps1	chr13	protein_coding	geranylgeranyl diphosphate synthase 1
known_NIR_4460	chr13	14232473;14234035	14233904;14237791	-	14232473	14237791	cassetteExon	ENSMUST00000170957.3	known	0.22	2.5	9	1;4	9	n	0.33	2.5	5	3;2	5	y	0.24	5.0	16	9;1	16	n	0.50	7.0	7	13;1	7	n	0.16	2.5	13	4;1	13	n	0.20	1.5	6	3;0	6	n	0.29	4.0	10	6;2	10	y	0.60	4.5	3	9;0	3	n	0.23	3.0	10	3;3	10	y	0.18	3.0	14	4;2	14	y	0.24	2.5	8	5;0	8	n	0.22	2.5	9	1;4	9	n	ENSMUSG00000021302.11	Ggps1	chr13	protein_coding	geranylgeranyl diphosphate synthase 1
known_NIR_4461	chr13	14232473;14234038	14233904;14237791	-	14232473	14237791	cassetteExon	ENSMUST00000170957.3	known	0.05	0.5	9	1;0	9	n	0.23	1.5	5	3;0	5	n	0.24	5.0	16	9;1	16	n	0.48	6.5	7	13;0	7	n	0.19	3.0	13	4;2	13	y	0.20	1.5	6	3;0	6	n	0.29	4.0	10	6;2	10	y	0.62	5.0	3	9;1	3	n	0.17	2.0	10	3;1	10	n	0.12	2.0	14	4;0	14	n	0.24	2.5	8	5;0	8	n	0.05	0.5	9	1;0	9	n	ENSMUSG00000021302.11	Ggps1	chr13	protein_coding	geranylgeranyl diphosphate synthase 1
known_NIR_4462	chr13	14232473;14234042	14233904;14237791	-	14232473	14237791	cassetteExon	ENSMUST00000170957.3	known	0.05	0.5	9	1;0	9	n	0.38	3.0	5	3;3	5	y	0.27	6.0	16	9;3	16	y	0.48	6.5	7	13;0	7	n	0.19	3.0	13	4;2	13	y	0.20	1.5	6	3;0	6	n	0.29	4.0	10	6;2	10	y	0.65	5.5	3	9;2	3	y	0.20	2.5	10	3;2	10	y	0.22	4.0	14	4;4	14	y	0.24	2.5	8	5;0	8	n	0.18	2.0	9	1;3	9	n	ENSMUSG00000021302.11	Ggps1	chr13	protein_coding	geranylgeranyl diphosphate synthase 1
known_NIR_4463	chr13	14339527	14355805	+	14339527	14344504	3pMXE	ENSMUST00000129488.8	known	0.15	2	11	2	11	y	0.00	0	2	0	2	n	0.12	3	21	3	21	y	0.38	6	10	6	10	y	0.20	5	20	5	20	y	0.46	6	7	6	7	y	0.21	4	15	4	15	y	0.06	1	16	1	16	n	0.27	3	8	3	8	y	0.19	3	13	3	13	y	0.12	2	14	2	14	y	0.31	5	11	5	11	y	ENSMUSG00000039219.19	Arid4b	chr13	protein_coding	AT rich interactive domain 4B (RBP1-like)
known_NIR_4464	chr13	14339527;14344656	14344504;14355805	+	14339527	14355805	cassetteExon	ENSMUST00000110536.8	known	0.75	6.0	2	11;1	2	n	1.00	3.0	0	2;4	0	n	0.81	13.0	3	21;5	3	y	0.60	9.0	6	10;8	6	y	0.67	10.0	5	20;0	5	n	0.40	4.0	6	7;1	6	n	0.68	8.5	4	15;2	4	y	0.91	10.5	1	16;5	1	n	0.60	4.5	3	8;1	3	n	0.73	8.0	3	13;3	3	y	0.78	7.0	2	14;0	2	n	0.64	9.0	5	11;7	5	y	ENSMUSG00000039219.19	Arid4b	chr13	protein_coding	AT rich interactive domain 4B (RBP1-like)
known_NIR_4465	chr13	14339527;14344764	14344504;14355805	+	14339527	14355805	cassetteExon	ENSMUST00000110536.8	known	0.86	12.0	2	11;13	2	y	1.00	7.5	0	2;13	0	n	0.88	22.0	3	21;23	3	y	0.66	11.5	6	10;13	6	y	0.78	18.0	5	20;16	5	y	0.52	6.5	6	7;6	6	y	0.80	16.0	4	15;17	4	y	0.94	14.5	1	16;13	1	n	0.67	6.0	3	8;4	3	y	0.78	10.5	3	13;8	3	y	0.81	8.5	2	14;3	2	y	0.72	13.0	5	11;15	5	y	ENSMUSG00000039219.19	Arid4b	chr13	protein_coding	AT rich interactive domain 4B (RBP1-like)
known_NIR_4466	chr13	14344656	14355805	+	14344764	14355805	A5SS	ENSMUST00000110534.8	known	0.07	1	13	1	13	n	0.24	4	13	4	13	y	0.18	5	23	5	23	y	0.38	8	13	8	13	y	0.00	0	16	0	16	n	0.14	1	6	1	6	n	0.11	2	17	2	17	y	0.28	5	13	5	13	y	0.20	1	4	1	4	n	0.27	3	8	3	8	y	0.00	0	3	0	3	n	0.32	7	15	7	15	y	ENSMUSG00000039219.19	Arid4b	chr13	protein_coding	AT rich interactive domain 4B (RBP1-like)
known_NIR_4467	chr13	14365841;14366686	14366534;14367951	+	14365841	14367951	cassetteExon	ENSMUST00000110536.8	known	0.05	1.0	18	2;0	18	n	0.12	2.0	14	2;2	14	y	0.07	2.5	33	4;1	33	n	0.21	5.0	19	8;2	19	y	0.24	7.5	24	9;6	24	y	0.54	3.5	3	5;2	3	y	0.16	4.5	24	7;2	24	y	0.22	2.5	9	1;4	9	n	0.12	2.0	15	4;0	15	n	0.18	6.5	29	11;2	29	y	0.26	2.5	7	0;5	7	n	0.09	2.5	26	1;4	26	n	ENSMUSG00000039219.19	Arid4b	chr13	protein_coding	AT rich interactive domain 4B (RBP1-like)
known_NIR_4468	chr13	14786189	14787447	-	14786189	14787477	A5SS	ENSMUST00000220621.2	known	0.06	6	87	6	87	y	0.00	0	104	0	104	n	0.01	1	125	1	125	n	0.02	2	91	2	91	y	0.03	4	111	4	111	y	0.00	0	64	0	64	n	0.02	2	111	2	111	y	0.06	4	64	4	64	y	0.00	0	68	0	68	n	0.01	2	143	2	143	y	0.01	1	89	1	89	n	0.00	0	105	0	105	n	ENSMUSG00000015672.5	Mrpl32	chr13	protein_coding	mitochondrial ribosomal protein L32
known_NIR_4469	chr13	14786189	14787493	-	14786189	14787477	A5SS	ENSMUST00000220621.2	known	0.03	3	87	3	87	y	0.02	2	104	2	104	y	0.00	0	125	0	125	n	0.03	3	91	3	91	y	0.04	5	111	5	111	y	0.02	1	64	1	64	n	0.02	2	111	2	111	y	0.03	2	64	2	64	y	0.01	1	68	1	68	n	0.02	3	143	3	143	y	0.01	1	89	1	89	n	0.02	2	105	2	105	y	ENSMUSG00000015672.5	Mrpl32	chr13	protein_coding	mitochondrial ribosomal protein L32
known_NIR_4470	chr13	14804949	14810885	+	14804869	14810885	A5SS	ENSMUST00000178289.3	known	0.93	25	2	25	2	y	0.88	21	3	21	3	y	1.00	54	0	54	0	n	0.96	46	2	46	2	y	0.90	55	6	55	6	y	0.91	41	4	41	4	y	0.91	41	4	41	4	y	0.89	31	4	31	4	y	0.90	26	3	26	3	y	0.95	37	2	37	2	y	0.88	23	3	23	3	y	0.85	23	4	23	4	y	ENSMUSG00000039182.7	AW209491	chr13	protein_coding	expressed sequence AW209491
known_NIR_4471	chr13	14804972	14810885	+	14804949	14810885	A5SS	ENSMUST00000038690.6	known	0.00	0	25	0	25	n	0.00	0	21	0	21	n	0.00	0	54	0	54	n	0.00	0	46	0	46	n	0.00	0	55	0	55	n	0.05	2	41	2	41	y	0.00	0	41	0	41	n	0.00	0	31	0	31	n	0.00	0	26	0	26	n	0.00	0	37	0	37	n	0.00	0	23	0	23	n	0.00	0	23	0	23	n	ENSMUSG00000039182.7	AW209491	chr13	protein_coding	expressed sequence AW209491
known_NIR_4472	chr13	17858433	17859294	-	17858437	17859294	A3SS	ENSMUST00000220514.2	known	0.17	10	49	10	49	y	0.12	8	60	8	60	y	0.20	7	28	7	28	y	0.15	9	50	9	50	y	0.09	7	71	7	71	y	0.24	4	13	4	13	y	0.22	26	91	26	91	y	0.14	3	18	3	18	y	0.27	10	27	10	27	y	0.17	17	83	17	83	y	0.29	17	42	17	42	y	0.18	8	37	8	37	y	ENSMUSG00000055137.8	Sugct	chr13	protein_coding	succinyl-CoA glutarate-CoA transferase
known_NIR_4473	chr13	17859370	17869224	-	17847187	17869224	A3SS	ENSMUST00000068545.6	known	0.57	51	38	51	38	y	0.59	47	32	47	32	y	0.60	29	19	29	19	y	0.53	60	53	60	53	y	0.53	59	52	59	52	y	0.68	23	11	23	11	y	0.56	63	49	63	49	y	0.64	30	17	30	17	y	0.47	38	42	38	42	y	0.50	72	73	72	73	y	0.42	44	61	44	61	y	0.49	42	43	42	43	y	ENSMUSG00000055137.8	Sugct	chr13	protein_coding	succinyl-CoA glutarate-CoA transferase
known_NIR_4474	chr13	17859374	17869224	-	17847187	17869224	A3SS	ENSMUST00000068545.6	known	0.03	1	38	1	38	n	0.11	4	32	4	32	y	0.17	4	19	4	19	y	0.02	1	53	1	53	n	0.04	2	52	2	52	y	0.15	2	11	2	11	y	0.16	9	49	9	49	y	0.00	0	17	0	17	n	0.05	2	42	2	42	y	0.03	2	73	2	73	y	0.05	3	61	3	61	y	0.12	6	43	6	43	y	ENSMUSG00000055137.8	Sugct	chr13	protein_coding	succinyl-CoA glutarate-CoA transferase
known_NIR_4475	chr13	17859374	17869224	-	17859370	17869224	A3SS	ENSMUST00000220514.2	known	0.02	1	51	1	51	n	0.08	4	47	4	47	y	0.12	4	29	4	29	y	0.02	1	60	1	60	n	0.03	2	59	2	59	y	0.08	2	23	2	23	y	0.12	9	63	9	63	y	0.00	0	30	0	30	n	0.05	2	38	2	38	y	0.03	2	72	2	72	y	0.06	3	44	3	44	y	0.12	6	42	6	42	y	ENSMUSG00000055137.8	Sugct	chr13	protein_coding	succinyl-CoA glutarate-CoA transferase
known_NIR_4476	chr13	17870405	17871427	+	17869943	17871427	A5SS	ENSMUST00000221480.2	known	0.93	39	3	39	3	y	0.96	24	1	24	1	n	0.95	19	1	19	1	n	0.90	37	4	37	4	y	0.84	52	10	52	10	y	1.00	17	0	17	0	n	0.94	51	3	51	3	y	0.95	21	1	21	1	n	0.93	25	2	25	2	y	0.88	44	6	44	6	y	0.93	50	4	50	4	y	0.85	41	7	41	7	y	ENSMUSG00000012429.10	Mplkip	chr13	protein_coding	M-phase specific PLK1 intereacting protein
known_NIR_4477	chr13	17894390	17895673	-	17894210	17895673	A3SS	ENSMUST00000223490.2	known	0.52	17	16	17	16	y	0.38	12	20	12	20	y	0.57	28	21	28	21	y	0.43	18	24	18	24	y	0.37	21	36	21	36	y	0.64	21	12	21	12	y	0.44	23	29	23	29	y	0.29	7	17	7	17	y	0.32	12	25	12	25	y	0.40	21	32	21	32	y	0.44	14	18	14	18	y	0.32	12	26	12	26	y	ENSMUSG00000041297.9	Cdk13	chr13	protein_coding	cyclin-dependent kinase 13
known_NIR_4478	chr13	18929509	18966817	+	18929509	18932260	3pMXE	ENSMUST00000222269.2	known	0.98	58	1	58	1	n	1.00	37	0	37	0	n	1.00	70	0	70	0	n	0.97	77	2	77	2	y	1.00	109	0	109	0	n	1.00	53	0	53	0	n	1.00	79	0	79	0	n	1.00	50	0	50	0	n	1.00	60	0	60	0	n	1.00	124	0	124	0	n	1.00	50	0	50	0	n	0.98	83	2	83	2	y	ENSMUSG00000041236.9	Vps41	chr13	protein_coding	VPS41 HOPS complex subunit
known_NIR_4479	chr13	18998463	19011774	+	18998463;19008047	19007950;19011774	ES	ENSMUST00000072961.6	known	0.00	0	60.0	0	59;61	n	0.06	2	31.5	2	30;33	y	0.04	2	53.5	2	50;57	y	0.00	0	70.5	0	58;83	n	0.00	0	86.5	0	85;88	n	0.00	0	45.0	0	38;52	n	0.00	0	69.5	0	61;78	n	0.02	1	42.5	1	39;46	n	0.02	1	58.0	1	56;60	n	0.00	0	85.5	0	72;99	n	0.02	1	51.0	1	48;54	n	0.00	0	79.5	0	73;86	n	ENSMUSG00000041236.9	Vps41	chr13	protein_coding	VPS41 HOPS complex subunit
known_NIR_4480	chr13	18998463	19011774	+	19008047	19011774	5pMXE	ENSMUST00000222010.2	known	0.00	0	61	0	61	n	0.06	2	33	2	33	y	0.03	2	57	2	57	y	0.00	0	83	0	83	n	0.00	0	88	0	88	n	0.00	0	52	0	52	n	0.00	0	78	0	78	n	0.02	1	46	1	46	n	0.02	1	60	1	60	n	0.00	0	99	0	99	n	0.02	1	54	1	54	n	0.00	0	86	0	86	n	ENSMUSG00000041236.9	Vps41	chr13	protein_coding	VPS41 HOPS complex subunit
known_NIR_4481	chr13	19549515	19551914	-	19543221	19551914	A3SS	ENSMUST00000196268.5	known	0.06	3	45	3	45	y	0.07	4	52	4	52	y	0.00	0	51	0	51	n	0.03	1	38	1	38	n	0.00	0	59	0	59	n	0.05	2	41	2	41	y	0.05	3	57	3	57	y	0.03	1	36	1	36	n	0.03	1	36	1	36	n	0.00	0	76	0	76	n	0.07	2	27	2	27	y	0.11	6	49	6	49	y	ENSMUSG00000003062.14	Stard3nl	chr13	protein_coding	STARD3 N-terminal like
known_NIR_4482	chr13	19552009	19554650	-	19552009	19554420	A5SS	ENSMUST00000199278.3	known	0.04	2	53	2	53	y	0.01	1	76	1	76	n	0.00	0	48	0	48	n	0.02	1	62	1	62	n	0.00	0	66	0	66	n	0.02	1	40	1	40	n	0.00	0	77	0	77	n	0.00	0	35	0	35	n	0.00	0	41	0	41	n	0.00	0	47	0	47	n	0.02	1	47	1	47	n	0.00	0	59	0	59	n	ENSMUSG00000003062.14	Stard3nl	chr13	protein_coding	STARD3 N-terminal like
known_NIR_4483	chr13	19552009	19554650	-	19552009;19554537	19554420;19554650	ES	ENSMUST00000197565.3	known	0.04	2	52.5	2	53;52	y	0.01	1	66.0	1	76;56	n	0.00	0	47.5	0	48;47	n	0.02	1	53.5	1	62;45	n	0.00	0	68.0	0	66;70	n	0.02	1	43.5	1	40;47	n	0.00	0	67.0	0	77;57	n	0.00	0	34.5	0	35;34	n	0.00	0	34.5	0	41;28	n	0.00	0	56.5	0	47;66	n	0.02	1	50.5	1	47;54	n	0.00	0	56.5	0	59;54	n	ENSMUSG00000003062.14	Stard3nl	chr13	protein_coding	STARD3 N-terminal like
known_NIR_4484	chr13	21374140	21374267	+	21374140	21374262	A3SS	ENSMUST00000222544.2	known	0.03	2	59	2	59	y	0.01	1	68	1	68	n	0.00	0	110	0	110	n	0.03	2	56	2	56	y	0.00	0	97	0	97	n	0.00	0	59	0	59	n	0.00	0	96	0	96	n	0.03	2	58	2	58	y	0.00	0	58	0	58	n	0.04	2	45	2	45	y	0.03	2	65	2	65	y	0.03	2	63	2	63	y	ENSMUSG00000021326.14	Trim27	chr13	protein_coding	tripartite motif-containing 27
known_NIR_4485	chr13	21572876	21578132	-	21577744	21578132	3pMXE	ENSMUST00000224820.2	known	1.00	33	0	33	0	n	1.00	36	0	36	0	n	1.00	47	0	47	0	n	1.00	49	0	49	0	n	1.00	59	0	59	0	n	1.00	41	0	41	0	n	0.95	61	3	61	3	y	1.00	42	0	42	0	n	1.00	48	0	48	0	n	1.00	48	0	48	0	n	0.95	56	3	56	3	y	1.00	36	0	36	0	n	ENSMUSG00000021327.20	Zkscan3	chr13	protein_coding	zinc finger with KRAB and SCAN domains 3
known_NIR_4486	chr13	21572876	21578132	-	21577965	21578132	3pMXE	ENSMUST00000116433.2	known	1.00	33	0	33	0	n	0.92	36	3	36	3	y	0.98	47	1	47	1	n	0.96	49	2	49	2	y	0.92	59	5	59	5	y	1.00	41	0	41	0	n	0.97	61	2	61	2	y	0.98	42	1	42	1	n	0.92	48	4	48	4	y	0.94	48	3	48	3	y	1.00	56	0	56	0	n	1.00	36	0	36	0	n	ENSMUSG00000021327.20	Zkscan3	chr13	protein_coding	zinc finger with KRAB and SCAN domains 3
known_NIR_4487	chr13	21572876;21577744	21577605;21578132	-	21572876	21578132	cassetteExon	ENSMUST00000070785.16	known	0.03	1.0	33	2;0	33	n	0.03	1.0	36	2;0	36	n	0.00	0.0	47	0;0	47	n	0.01	0.5	49	1;0	49	n	0.03	2.0	59	4;0	59	n	0.01	0.5	41	1;0	41	n	0.04	2.5	61	2;3	61	y	0.00	0.0	42	0;0	42	n	0.01	0.5	48	1;0	48	n	0.00	0.0	48	0;0	48	n	0.03	1.5	56	0;3	56	n	0.00	0.0	36	0;0	36	n	ENSMUSG00000021327.20	Zkscan3	chr13	protein_coding	zinc finger with KRAB and SCAN domains 3
known_NIR_4488	chr13	21572876;21577965	21577605;21578132	-	21572876	21578132	cassetteExon	ENSMUST00000070785.16	known	0.03	1.0	33	2;0	33	n	0.06	2.5	36	2;3	36	y	0.01	0.5	47	0;1	47	n	0.03	1.5	49	1;2	49	n	0.07	4.5	59	4;5	59	y	0.01	0.5	41	1;0	41	n	0.03	2.0	61	2;2	61	y	0.01	0.5	42	0;1	42	n	0.05	2.5	48	1;4	48	n	0.03	1.5	48	0;3	48	n	0.00	0.0	56	0;0	56	n	0.00	0.0	36	0;0	36	n	ENSMUSG00000021327.20	Zkscan3	chr13	protein_coding	zinc finger with KRAB and SCAN domains 3
known_NIR_4489	chr13	21579076	21580357	-	21579076	21580270	A5SS	ENSMUST00000070785.16	known	0.00	0	41	0	41	n	0.10	3	28	3	28	y	0.00	0	52	0	52	n	0.02	1	57	1	57	n	0.03	2	75	2	75	y	0.00	0	27	0	27	n	0.07	3	43	3	43	y	0.04	2	43	2	43	y	0.05	2	36	2	36	y	0.00	0	67	0	67	n	0.00	0	57	0	57	n	0.00	0	41	0	41	n	ENSMUSG00000021327.20	Zkscan3	chr13	protein_coding	zinc finger with KRAB and SCAN domains 3
known_NIR_4490	chr13	21580744	21586562	-	21580744	21586842	A5SS	ENSMUST00000116434.11	known	0.06	1	16	1	16	n	0.17	2	10	2	10	y	0.16	3	16	3	16	y	0.29	5	12	5	12	y	0.32	11	23	11	23	y	0.30	3	7	3	7	y	0.27	6	16	6	16	y	0.24	4	13	4	13	y	0.20	3	12	3	12	y	0.18	3	14	3	14	y	0.16	3	16	3	16	y	0.17	5	24	5	24	y	ENSMUSG00000021327.20	Zkscan3	chr13	protein_coding	zinc finger with KRAB and SCAN domains 3
known_NIR_4491	chr13	21580744	21586842	-	21580747	21586842	A3SS	ENSMUST00000070785.16	known	0.53	16	14	16	14	y	0.50	10	10	10	10	y	0.52	16	15	16	15	y	0.35	12	22	12	22	y	0.56	23	18	23	18	y	0.29	7	17	7	17	y	0.53	16	14	16	14	y	0.43	13	17	13	17	y	0.44	12	15	12	15	y	0.38	14	23	14	23	y	0.59	16	11	16	11	y	0.53	24	21	24	21	y	ENSMUSG00000021327.20	Zkscan3	chr13	protein_coding	zinc finger with KRAB and SCAN domains 3
known_NIR_4492	chr13	21580747	21586562	-	21580744	21586562	A3SS	ENSMUST00000224820.2	known	0.91	10	1	10	1	n	0.33	1	2	1	2	n	0.82	14	3	14	3	y	0.72	13	5	13	5	y	0.65	20	11	20	11	y	0.75	9	3	9	3	y	0.68	13	6	13	6	y	0.83	19	4	19	4	y	0.75	9	3	9	3	y	0.81	13	3	13	3	y	0.70	7	3	7	3	y	0.64	9	5	9	5	y	ENSMUSG00000021327.20	Zkscan3	chr13	protein_coding	zinc finger with KRAB and SCAN domains 3
known_NIR_4493	chr13	21580747	21586562	-	21580747	21586842	A5SS	ENSMUST00000070785.16	known	0.42	10	14	10	14	y	0.09	1	10	1	10	n	0.48	14	15	14	15	y	0.37	13	22	13	22	y	0.53	20	18	20	18	y	0.35	9	17	9	17	y	0.48	13	14	13	14	y	0.53	19	17	19	17	y	0.38	9	15	9	15	y	0.36	13	23	13	23	y	0.39	7	11	7	11	y	0.30	9	21	9	21	y	ENSMUSG00000021327.20	Zkscan3	chr13	protein_coding	zinc finger with KRAB and SCAN domains 3
known_NIR_4494	chr13	21586422	21586562	-	21580744	21586562	A3SS	ENSMUST00000224820.2	known	0.00	0	1	0	1	n	0.50	2	2	2	2	n	0.25	1	3	1	3	n	0.29	2	5	2	5	n	0.35	6	11	6	11	y	0.00	0	3	0	3	n	0.40	4	6	4	6	y	0.33	2	4	2	4	n	0.00	0	3	0	3	n	0.40	2	3	2	3	n	0.25	1	3	1	3	n	0.44	4	5	4	5	n	ENSMUSG00000021327.20	Zkscan3	chr13	protein_coding	zinc finger with KRAB and SCAN domains 3
known_NIR_4495	chr13	21586422	21586562	-	21580747	21586562	A3SS	ENSMUST00000117721.8	known	0.00	0	10	0	10	n	0.67	2	1	2	1	n	0.07	1	14	1	14	n	0.13	2	13	2	13	y	0.23	6	20	6	20	y	0.00	0	9	0	9	n	0.24	4	13	4	13	y	0.10	2	19	2	19	y	0.00	0	9	0	9	n	0.13	2	13	2	13	y	0.12	1	7	1	7	n	0.31	4	9	4	9	y	ENSMUSG00000021327.20	Zkscan3	chr13	protein_coding	zinc finger with KRAB and SCAN domains 3
known_NIR_4496	chr13	21632064	21632337	-	21632064	21633611	A5SS	ENSMUST00000032820.15	known	0.96	27	1	27	1	n	1.00	25	0	25	0	n	0.98	40	1	40	1	n	0.96	26	1	26	1	n	0.91	39	4	39	4	y	1.00	21	0	21	0	n	0.92	22	2	22	2	y	1.00	18	0	18	0	n	1.00	17	0	17	0	n	1.00	49	0	49	0	n	1.00	17	0	17	0	n	0.95	41	2	41	2	y	ENSMUSG00000022228.15	Zscan26	chr13	protein_coding	zinc finger and SCAN domain containing 26
known_NIR_4497	chr13	21633503	21633611	-	21632064	21633611	A3SS	ENSMUST00000032820.15	known	0.98	42	1	42	1	n	1.00	33	0	33	0	n	0.98	52	1	52	1	n	0.98	45	1	45	1	n	0.94	63	4	63	4	y	1.00	24	0	24	0	n	0.95	38	2	38	2	y	1.00	40	0	40	0	n	1.00	45	0	45	0	n	1.00	47	0	47	0	n	1.00	39	0	39	0	n	0.97	58	2	58	2	y	ENSMUSG00000022228.15	Zscan26	chr13	protein_coding	zinc finger and SCAN domain containing 26
known_NIR_4498	chr13	23541883;23546824	23546750;23546973	-	23541883	23546973	cassetteExon	ENSMUST00000050101.9	known	0.87	6.5	1	6;7	1	n	0.60	1.5	1	0;3	1	n	0.48	11.0	12	9;13	12	y	0.73	11.0	4	10;12	4	y	0.44	9.5	12	10;9	12	y	0.71	12.5	5	12;13	5	y	0.85	11.0	2	13;9	2	y	0.48	7.5	8	10;5	8	y	0.59	10.0	7	10;10	7	y	0.62	10.0	6	7;13	6	y	0.47	4.5	5	4;5	5	y	0.58	9.5	7	10;9	7	y	ENSMUSG00000046351.12	Zfp322a	chr13	protein_coding	zinc finger protein 322A
known_NIR_4499	chr13	23552375	23553027	-	23552375	23553305	A5SS	ENSMUST00000050101.9	known	0.75	3	1	3	1	n	0.00	0	6	0	6	n	0.13	2	13	2	13	y	0.27	3	8	3	8	y	0.15	2	11	2	11	y	0.20	3	12	3	12	y	0.14	1	6	1	6	n	0.00	0	2	0	2	n	0.09	1	10	1	10	n	0.00	0	5	0	5	n	0.25	2	6	2	6	n	0.14	1	6	1	6	n	ENSMUSG00000046351.12	Zfp322a	chr13	protein_coding	zinc finger protein 322A
known_NIR_4500	chr13	23891049	23894610	-	23891049;23892274	23892011;23894610	ES	ENSMUST00000091706.14	known	0.01	1	109.0	1	127;91	n	0.02	2	99.5	2	121;78	y	0.00	0	168.0	0	215;121	n	0.02	2	129.0	2	173;85	y	0.01	1	172.5	1	205;140	n	0.00	0	97.0	0	116;78	n	0.01	1	147.5	1	197;98	n	0.01	1	71.5	1	89;54	n	0.02	2	85.5	2	111;60	y	0.01	1	144.0	1	193;95	n	0.00	0	102.5	0	128;77	n	0.02	3	127.0	3	149;105	y	ENSMUSG00000006611.16	Hfe	chr13	protein_coding	homeostatic iron regulator
known_NIR_4501	chr13	23991075	23994701	+	23991334	23994701	A5SS&ES	ENSMUST00000141717.8	known	0.00	0	327	0	327	n	0.00	0	313	0	313	n	0.00	0	574	0	574	n	0.00	0	496	0	496	n	0.00	0	490	0	490	n	0.00	0	257	0	257	n	0.00	0	442	0	442	n	0.00	0	213	0	213	n	0.00	0	393	0	393	n	0.00	2	596	2	596	y	0.00	0	415	0	415	n	0.00	0	673	0	673	n	ENSMUSG00000036110.15	Slc17a2	chr13	protein_coding	solute carrier family 17 (sodium phosphate), member 2
known_NIR_4502	chr13	23999256;24001590	24001504;24003001	+	23999256	24003001	cassetteExon	ENSMUST00000141717.8	known	0.67	197.0	95	176;218	95	y	0.69	215.5	95	197;234	95	y	0.76	428.0	136	412;444	136	y	0.70	270.5	115	240;301	115	y	0.77	311.0	92	284;338	92	y	0.81	173.5	42	171;176	42	y	0.75	300.5	98	268;333	98	y	0.85	126.0	22	127;125	22	y	0.76	260.0	82	243;277	82	y	0.70	392.5	172	386;399	172	y	0.65	294.0	161	263;325	161	y	0.66	349.5	182	329;370	182	y	ENSMUSG00000036110.15	Slc17a2	chr13	protein_coding	solute carrier family 17 (sodium phosphate), member 2
known_NIR_4503	chr13	24005058	24006278	+	24005092	24006278	A5SS	ENSMUST00000141717.8	known	0.55	323	259	323	259	y	0.57	401	299	401	299	y	0.54	390	336	390	336	y	0.55	338	279	338	279	y	0.57	348	267	348	267	y	0.56	173	135	173	135	y	0.61	472	305	472	305	y	0.54	137	116	137	116	y	0.63	360	211	360	211	y	0.61	572	361	572	361	y	0.61	439	283	439	283	y	0.61	502	324	502	324	y	ENSMUSG00000036110.15	Slc17a2	chr13	protein_coding	solute carrier family 17 (sodium phosphate), member 2
known_NIR_4504	chr13	24023648	24029320	+	24023648;24026523	24026400;24029320	ES	ENSMUST00000039721.14	known	0.08	8	89.5	8	75;104	y	0.01	1	75.0	1	53;97	n	0.06	8	127.0	8	128;126	y	0.08	11	134.5	11	121;148	y	0.04	6	131.0	6	95;167	y	0.04	4	94.5	4	78;111	y	0.09	13	130.0	13	108;152	y	0.04	4	86.0	4	69;103	y	0.06	6	95.0	6	63;127	y	0.04	6	145.0	6	97;193	y	0.05	5	99.0	5	76;122	y	0.07	7	100.5	7	80;121	y	ENSMUSG00000036083.16	Slc17a3	chr13	protein_coding	solute carrier family 17 (sodium phosphate), member 3
known_NIR_4505	chr13	24054334	24056542	+	24052047	24056542	A5SS	ENSMUST00000130211.8	known	0.07	1	13	1	13	n	0.38	3	5	3	5	n	0.09	2	21	2	21	y	0.00	0	9	0	9	n	0.16	3	16	3	16	y	0.00	0	6	0	6	n	0.12	3	23	3	23	y	0.18	2	9	2	9	y	0.17	3	15	3	15	y	0.07	2	26	2	26	y	0.00	0	21	0	21	n	0.10	3	27	3	27	y	ENSMUSG00000021335.14	Slc17a1	chr13	protein_coding	solute carrier family 17 (sodium phosphate), member 1
known_NIR_4506	chr13	24054426	24056542	+	24052047	24056542	A5SS	ENSMUST00000130211.8	known	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	21	0	21	n	0.18	2	9	2	9	y	0.06	1	16	1	16	n	0.14	1	6	1	6	n	0.00	0	23	0	23	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.00	0	26	0	26	n	0.00	0	21	0	21	n	0.10	3	27	3	27	y	ENSMUSG00000021335.14	Slc17a1	chr13	protein_coding	solute carrier family 17 (sodium phosphate), member 1
known_NIR_4507	chr13	24058597	24059472	+	24058748	24059472	A5SS	ENSMUST00000110413.8	known	0.07	1	14	1	14	n	0.00	0	10	0	10	n	0.00	0	56	0	56	n	0.00	0	24	0	24	n	0.10	3	27	3	27	y	0.00	0	27	0	27	n	0.00	0	23	0	23	n	0.00	0	18	0	18	n	0.00	0	12	0	12	n	0.00	0	26	0	26	n	0.00	0	19	0	19	n	0.12	4	29	4	29	y	ENSMUSG00000021335.14	Slc17a1	chr13	protein_coding	solute carrier family 17 (sodium phosphate), member 1
known_NIR_4508	chr13	24082852	24084439	-	24082892	24084439	A3SS	ENSMUST00000225797.2	known	0.00	0	26	0	26	n	0.16	4	21	4	21	y	0.30	3	7	3	7	y	0.07	2	28	2	28	y	0.05	2	35	2	35	y	0.29	2	5	2	5	n	0.09	2	20	2	20	y	0.43	3	4	3	4	n	0.13	2	13	2	13	y	0.13	4	26	4	26	y	0.09	2	21	2	21	y	0.10	3	27	3	27	y	ENSMUSG00000021336.18	Slc17a4	chr13	protein_coding	solute carrier family 17 (sodium phosphate), member 4
known_NIR_4509	chr13	24085806	24085885	-	24085806	24085881	A5SS	ENSMUST00000225797.2	known	0.12	2	15	2	15	y	0.12	3	23	3	23	y	0.00	0	6	0	6	n	0.00	0	26	0	26	n	0.00	0	25	0	25	n	0.22	2	7	2	7	n	0.11	4	33	4	33	y	0.14	1	6	1	6	n	0.07	2	25	2	25	y	0.11	6	50	6	50	y	0.09	4	40	4	40	y	0.03	1	37	1	37	n	ENSMUSG00000021336.18	Slc17a4	chr13	protein_coding	solute carrier family 17 (sodium phosphate), member 4
known_NIR_4510	chr13	24088781	24089400	-	24089313	24089400	A3SS	ENSMUST00000224360.2	known	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	18	0	18	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.05	1	19	1	19	n	0.00	0	12	0	12	n	0.13	2	13	2	13	y	0.04	1	26	1	26	n	0.00	0	21	0	21	n	0.00	0	18	0	18	n	ENSMUSG00000021336.18	Slc17a4	chr13	protein_coding	solute carrier family 17 (sodium phosphate), member 4
known_NIR_4511	chr13	24088781;24089313	24089226;24089400	-	24088781	24089400	cassetteExon	ENSMUST00000225797.2	known	1.00	10.0	0	9;11	0	n	1.00	12.0	0	13;11	0	n	1.00	5.5	0	1;10	0	n	1.00	17.5	0	17;18	0	n	1.00	11.0	0	6;16	0	n	1.00	8.0	0	10;6	0	n	0.94	16.0	1	13;19	1	n	1.00	14.0	0	16;12	0	n	0.89	15.5	2	18;13	2	y	0.96	25.0	1	24;26	1	n	1.00	18.5	0	16;21	0	n	1.00	18.0	0	18;18	0	n	ENSMUSG00000021336.18	Slc17a4	chr13	protein_coding	solute carrier family 17 (sodium phosphate), member 4
known_NIR_4512	chr13	24197443	24206479	-	24197443;24203693	24203547;24206479	ES	ENSMUST00000151566.2	known	0.88	15	2.0	15	1;3	n	0.96	25	1.0	25	2;0	n	1.00	21	0.0	21	0;0	n	0.98	29	0.5	29	1;0	n	1.00	24	0.0	24	0;0	n	0.86	6	1.0	6	0;2	n	0.97	16	0.5	16	0;1	n	1.00	22	0.0	22	0;0	n	1.00	32	0.0	32	0;0	n	0.96	34	1.5	34	2;1	n	0.93	32	2.5	32	3;2	y	0.91	21	2.0	21	2;2	y	ENSMUSG00000021338.18	Carmil1	chr13	protein_coding	capping protein regulator and myosin 1 linker 1
known_NIR_4513	chr13	24511471;24514439	24514278;24579182	+	24511471	24579182	cassetteExon	ENSMUST00000224953.2	known	0.00	0.0	12	0;0	12	n	0.43	3.0	4	6;0	4	n	0.02	0.5	22	1;0	22	n	0.20	2.0	8	2;2	8	y	0.02	0.5	23	1;0	23	n	0.00	0.0	10	0;0	10	n	0.17	2.0	10	2;2	10	y	0.00	0.0	12	0;0	12	n	0.04	0.5	13	1;0	13	n	0.02	0.5	24	0;1	24	n	0.05	0.5	9	0;1	9	n	0.03	0.5	17	1;0	17	n	ENSMUSG00000016756.18	Cmah	chr13	protein_coding	cytidine monophospho-N-acetylneuraminic acid hydroxylase
known_NIR_4514	chr13	24579470	24601204	+	24579470	24600884	A3SS&ES	ENSMUST00000224953.2	known	0.00	0	18	0	18	n	0.00	0	12	0	12	n	0.06	3	47	3	47	y	0.00	0	29	0	29	n	0.07	3	40	3	40	y	0.00	0	21	0	21	n	0.04	1	26	1	26	n	0.05	1	18	1	18	n	0.00	0	17	0	17	n	0.00	0	28	0	28	n	0.00	0	17	0	17	n	0.07	2	28	2	28	y	ENSMUSG00000016756.18	Cmah	chr13	protein_coding	cytidine monophospho-N-acetylneuraminic acid hydroxylase
known_NIR_4515	chr13	24601407	24612812	+	24601407;24606674	24606583;24612812	ES	ENSMUST00000224953.2	known	0.00	0	35.5	0	31;40	n	0.00	0	22.5	0	23;22	n	0.05	4	71.0	4	74;68	y	0.02	1	59.5	1	61;58	n	0.03	2	68.0	2	69;67	y	0.03	1	30.5	1	27;34	n	0.04	2	52.0	2	57;47	y	0.02	1	48.0	1	58;38	n	0.00	0	52.0	0	57;47	n	0.02	2	81.0	2	99;63	y	0.00	0	43.0	0	42;44	n	0.01	1	66.5	1	74;59	n	ENSMUSG00000016756.18	Cmah	chr13	protein_coding	cytidine monophospho-N-acetylneuraminic acid hydroxylase
known_NIR_4516	chr13	24612921	24619083	+	24612921;24614661	24614471;24619083	ES	ENSMUST00000224953.2	known	0.00	0	42.0	0	30;54	n	0.00	0	34.5	0	25;44	n	0.04	3	78.0	3	79;77	y	0.01	1	82.5	1	60;105	n	0.00	0	84.0	0	77;91	n	0.03	1	36.0	1	40;32	n	0.00	0	51.5	0	40;63	n	0.00	0	53.5	0	36;71	n	0.00	0	58.0	0	48;68	n	0.03	2	70.0	2	53;87	y	0.00	0	36.0	0	37;35	n	0.02	1	60.5	1	53;68	n	ENSMUSG00000016756.18	Cmah	chr13	protein_coding	cytidine monophospho-N-acetylneuraminic acid hydroxylase
known_NIR_4517	chr13	24619671	24623105	+	24619671	24620603	3pMXE	ENSMUST00000142882.2	known	0.26	9	25	9	25	y	0.28	7	18	7	18	y	0.41	28	41	28	41	y	0.20	12	49	12	49	y	0.25	13	38	13	38	y	0.19	6	25	6	25	y	0.23	12	41	12	41	y	0.33	12	24	12	24	y	0.22	10	35	10	35	y	0.26	15	42	15	42	y	0.28	13	33	13	33	y	0.32	16	34	16	34	y	ENSMUSG00000016756.18	Cmah	chr13	protein_coding	cytidine monophospho-N-acetylneuraminic acid hydroxylase
known_NIR_4518	chr13	24619671	24623105	+	24619671;24620740	24620603;24623105	ES	ENSMUST00000224953.2	known	0.20	9	36.5	9	25;48	y	0.27	7	19.0	7	18;20	y	0.38	28	45.5	28	41;50	y	0.17	12	57.5	12	49;66	y	0.20	13	51.5	13	38;65	y	0.17	6	29.0	6	25;33	y	0.23	12	40.0	12	41;39	y	0.25	12	36.0	12	24;48	y	0.17	10	48.0	10	35;61	y	0.22	15	52.0	15	42;62	y	0.28	13	33.0	13	33;33	y	0.28	16	41.5	16	34;49	y	ENSMUSG00000016756.18	Cmah	chr13	protein_coding	cytidine monophospho-N-acetylneuraminic acid hydroxylase
known_NIR_4519	chr13	24885713	24890074	+	24885713	24888753	3pMXE	ENSMUST00000238974.2	known	1.00	5	0	5	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.45	5	6	5	6	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.09	1	10	1	10	n	0.38	3	5	3	5	n	0.40	2	3	2	3	n	ENSMUSG00000036006.21	Ripor2	chr13	protein_coding	RHO family interacting cell polarization regulator 2
known_NIR_4520	chr13	24941651	24944143	-	24941656	24944143	A3SS	ENSMUST00000006898.10	known	0.00	0	41	0	41	n	0.00	0	35	0	35	n	0.00	0	26	0	26	n	0.00	0	34	0	34	n	0.05	2	36	2	36	y	0.00	0	9	0	9	n	0.00	0	34	0	34	n	0.00	0	24	0	24	n	0.00	0	14	0	14	n	0.00	0	52	0	52	n	0.00	0	30	0	30	n	0.00	0	34	0	34	n	ENSMUSG00000006715.12	Gmnn	chr13	protein_coding	geminin
known_NIR_4521	chr13	24944200	24945343	-	24944200	24945796	A5SS	ENSMUST00000110382.9	known	0.00	0	33	0	33	n	0.00	0	40	0	40	n	0.03	1	30	1	30	n	0.00	0	41	0	41	n	0.00	0	37	0	37	n	0.00	0	10	0	10	n	0.00	0	30	0	30	n	0.00	0	20	0	20	n	0.00	0	13	0	13	n	0.00	0	53	0	53	n	0.07	2	28	2	28	y	0.05	2	40	2	40	y	ENSMUSG00000006715.12	Gmnn	chr13	protein_coding	geminin
known_NIR_4522	chr13	24944200	24945796	-	24944200	24945570	A5SS	ENSMUST00000006898.10	known	1.00	33	0	33	0	n	1.00	40	0	40	0	n	1.00	30	0	30	0	n	1.00	41	0	41	0	n	1.00	37	0	37	0	n	1.00	10	0	10	0	n	1.00	30	0	30	0	n	0.91	20	2	20	2	y	1.00	13	0	13	0	n	1.00	53	0	53	0	n	1.00	28	0	28	0	n	1.00	40	0	40	0	n	ENSMUSG00000006715.12	Gmnn	chr13	protein_coding	geminin
known_NIR_4523	chr13	24986143	24988765	+	24987492	24988765	A5SS	ENSMUST00000019276.12	known	0.00	0	338	0	338	n	0.00	1	277	1	277	n	0.00	0	298	0	298	n	0.00	0	330	0	330	n	0.00	0	395	0	395	n	0.00	0	181	0	181	n	0.00	0	424	0	424	n	0.00	0	190	0	190	n	0.00	0	282	0	282	n	0.00	0	413	0	413	n	0.01	2	308	2	308	y	0.00	0	427	0	427	n	ENSMUSG00000019132.12	BC005537	chr13	protein_coding	cDNA sequence BC005537
known_NIR_4524	chr13	25004882	25015462	-	25004882	25015209	A5SS	ENSMUST00000006900.7	known	0.00	0	231	0	231	n	0.01	1	192	1	192	n	0.01	1	126	1	126	n	0.00	1	207	1	207	n	0.01	3	231	3	231	y	0.00	0	85	0	85	n	0.01	2	249	2	249	y	0.00	0	76	0	76	n	0.01	2	238	2	238	y	0.01	2	335	2	335	y	0.01	2	279	2	279	y	0.00	1	305	1	305	n	ENSMUSG00000006717.8	Acot13	chr13	protein_coding	acyl-CoA thioesterase 13
known_NIR_4525	chr13	25015912	25019999	+	25015912	25015993	3pMXE	ENSMUST00000223804.2	known	0.05	1	18	1	18	n	0.15	2	11	2	11	y	0.04	1	23	1	23	n	0.00	0	33	0	33	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.00	0	21	0	21	n	0.00	0	7	0	7	n	0.00	0	23	0	23	n	0.03	1	30	1	30	n	0.00	0	41	0	41	n	0.03	1	38	1	38	n	ENSMUSG00000035958.4	Tdp2	chr13	protein_coding	tyrosyl-DNA phosphodiesterase 2
known_NIR_4526	chr13	25015912	25019999	+	25015912;25016078	25015993;25019999	ES	ENSMUST00000038039.3	known	0.07	1	13.5	1	18;9	n	0.12	2	14.5	2	11;18	y	0.05	1	20.0	1	23;17	n	0.00	0	32.0	0	33;31	n	0.00	0	15.5	0	14;17	n	0.00	0	16.0	0	13;19	n	0.00	0	22.5	0	21;24	n	0.00	0	11.0	0	7;15	n	0.00	0	30.5	0	23;38	n	0.03	1	37.0	1	30;44	n	0.00	0	44.0	0	41;47	n	0.02	1	48.0	1	38;58	n	ENSMUSG00000035958.4	Tdp2	chr13	protein_coding	tyrosyl-DNA phosphodiesterase 2
known_NIR_4527	chr13	25015912	25019999	+	25016078	25019999	5pMXE	ENSMUST00000225490.2	known	0.10	1	9	1	9	n	0.10	2	18	2	18	y	0.06	1	17	1	17	n	0.00	0	31	0	31	n	0.00	0	17	0	17	n	0.00	0	19	0	19	n	0.00	0	24	0	24	n	0.00	0	15	0	15	n	0.00	0	38	0	38	n	0.02	1	44	1	44	n	0.00	0	47	0	47	n	0.02	1	58	1	58	n	ENSMUSG00000035958.4	Tdp2	chr13	protein_coding	tyrosyl-DNA phosphodiesterase 2
known_NIR_4528	chr13	25016078	25020838	+	25016078;25020169	25019999;25020838	ES	ENSMUST00000038039.3	known	0.00	0	13.0	0	9;17	n	0.00	0	27.0	0	18;36	n	0.00	0	21.0	0	17;25	n	0.00	0	32.5	0	31;34	n	0.00	0	25.0	0	17;33	n	0.00	0	12.5	0	19;6	n	0.00	0	27.5	0	24;31	n	0.07	1	13.5	1	15;12	n	0.00	0	37.5	0	38;37	n	0.04	2	51.5	2	44;59	y	0.00	0	44.5	0	47;42	n	0.04	2	53.0	2	58;48	y	ENSMUSG00000035958.4	Tdp2	chr13	protein_coding	tyrosyl-DNA phosphodiesterase 2
known_NIR_4529	chr13	25064904	25067724	+	25064904	25066524	3pMXE	ENSMUST00000169411.2	known	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.67	2	1	2	1	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.50	2	2	2	2	n	0.31	4	9	4	9	y	0.14	1	6	1	6	n	0.11	1	8	1	8	n	ENSMUSG00000006711.16	D130043K22Rik	chr13	protein_coding	RIKEN cDNA D130043K22 gene
known_NIR_4530	chr13	25064904;25066662	25066524;25067724	+	25064904	25067724	cassetteExon	ENSMUST00000141572.8	known	1.00	8.0	0	5;11	0	n	0.71	2.5	1	3;2	1	n	0.33	1.0	2	1;1	2	n	1.00	5.5	0	7;4	0	n	1.00	7.5	0	8;7	0	n	1.00	1.0	0	1;1	0	n	1.00	5.5	0	8;3	0	n	-	-	-	-	-	-	0.64	3.5	2	2;5	2	n	0.76	12.5	4	9;16	4	y	0.88	7.5	1	6;9	1	n	0.91	10.0	1	8;12	1	n	ENSMUSG00000006711.16	D130043K22Rik	chr13	protein_coding	RIKEN cDNA D130043K22 gene
known_NIR_4531	chr13	25146410	25146573	+	25146410	25146610	A3SS	ENSMUST00000021773.13	known	0.00	0	205	0	205	n	0.01	1	147	1	147	n	0.00	0	116	0	116	n	0.00	0	345	0	345	n	0.00	2	419	2	419	y	0.01	1	128	1	128	n	0.00	0	225	0	225	n	0.01	1	183	1	183	n	0.00	1	262	1	262	n	0.00	0	369	0	369	n	0.00	0	259	0	259	n	0.00	1	412	1	412	n	ENSMUSG00000021340.14	Gpld1	chr13	protein_coding	glycosylphosphatidylinositol specific phospholipase D1
known_NIR_4532	chr13	25202576	25202887	-	25202576	25204065	A5SS	ENSMUST00000021772.4	known	0.00	0	17	0	17	n	0.00	0	14	0	14	n	0.00	0	22	0	22	n	0.04	1	23	1	23	n	0.00	0	37	0	37	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.17	2	10	2	10	y	0.00	0	18	0	18	n	0.10	2	19	2	19	y	0.00	0	22	0	22	n	ENSMUSG00000021339.5	Mrs2	chr13	protein_coding	MRS2 magnesium transporter
known_NIR_4533	chr13	30022685	30030211	-	29961284	30030211	A3SS	ENSMUST00000140278.8	known	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.12	2	14	2	14	y	0.13	3	20	3	20	y	0.00	0	16	0	16	n	0.25	2	6	2	6	n	0.06	1	15	1	15	n	0.00	0	10	0	10	n	0.11	1	8	1	8	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.06	2	30	2	30	y	ENSMUSG00000006191.18	Cdkal1	chr13	protein_coding	CDK5 regulatory subunit associated protein 1-like 1
known_NIR_4534	chr13	30102760	30104097	-	30102778	30104097	A3SS	ENSMUST00000221536.2	known	0.12	1	7	1	7	n	0.00	0	1	0	1	n	0.33	4	8	4	8	y	0.17	1	5	1	5	n	0.40	6	9	6	9	y	0.00	0	8	0	8	n	0.33	2	4	2	4	n	0.00	0	6	0	6	n	0.56	5	4	5	4	n	0.17	1	5	1	5	n	0.50	1	1	1	1	n	0.50	6	6	6	6	y	ENSMUSG00000016477.19	E2f3	chr13	protein_coding	E2F transcription factor 3
known_NIR_4535	chr13	30529003	30564885	+	30529003	30529626	3pMXE	ENSMUST00000143181.8	known	0.99	73	1	73	1	n	0.96	52	2	52	2	y	1.00	57	0	57	0	n	0.96	95	4	95	4	y	0.97	156	4	156	4	y	0.98	45	1	45	1	n	0.97	135	4	135	4	y	0.98	87	2	87	2	y	0.96	80	3	80	3	y	0.96	109	4	109	4	y	0.98	102	2	102	2	y	1.00	135	0	135	0	n	ENSMUSG00000049115.16	Agtr1a	chr13	protein_coding	angiotensin II receptor, type 1a
known_NIR_4536	chr13	30529003	30564885	+	30529003;30549218	30549104;30564885	ES	ENSMUST00000222503.2	known	0.99	73	1.0	73	1;1	n	1.00	52	0.0	52	0;0	n	0.99	57	0.5	57	0;1	n	1.00	95	0.0	95	0;0	n	0.99	156	2.0	156	3;1	n	1.00	45	0.0	45	0;0	n	0.99	135	1.5	135	2;1	n	1.00	87	0.0	87	0;0	n	0.99	80	1.0	80	2;0	n	0.98	109	2.0	109	2;2	y	1.00	102	0.0	102	0;0	n	0.99	135	2.0	135	0;4	n	ENSMUSG00000049115.16	Agtr1a	chr13	protein_coding	angiotensin II receptor, type 1a
known_NIR_4537	chr13	30529003	30564885	+	30529754	30564885	5pMXE	ENSMUST00000221743.2	known	0.99	73	1	73	1	n	0.98	52	1	52	1	n	0.98	57	1	57	1	n	1.00	95	0	95	0	n	0.96	156	6	156	6	y	0.96	45	2	45	2	y	0.98	135	3	135	3	y	0.92	87	8	87	8	y	1.00	80	0	80	0	n	0.98	109	2	109	2	y	0.96	102	4	102	4	y	0.99	135	2	135	2	y	ENSMUSG00000049115.16	Agtr1a	chr13	protein_coding	angiotensin II receptor, type 1a
known_NIR_4538	chr13	30529003;30529754	30529626;30564885	+	30529003	30564885	cassetteExon	ENSMUST00000066412.8	known	0.01	1.0	73	1;1	73	n	0.03	1.5	52	2;1	52	n	0.01	0.5	57	0;1	57	n	0.02	2.0	95	4;0	95	n	0.03	5.0	156	4;6	156	y	0.03	1.5	45	1;2	45	n	0.03	3.5	135	4;3	135	y	0.05	5.0	87	2;8	87	y	0.02	1.5	80	3;0	80	n	0.03	3.0	109	4;2	109	y	0.03	3.0	102	2;4	102	y	0.01	1.0	135	0;2	135	n	ENSMUSG00000049115.16	Agtr1a	chr13	protein_coding	angiotensin II receptor, type 1a
known_NIR_4539	chr13	30529003;30529754	30529626;30564885	+	30529003;30549218	30549104;30564885	MXE	ENSMUST00000222503.2	known	0.50	1.0	1.0	1;1	1;1	n	1.00	1.5	0.0	2;1	0;0	n	0.50	0.5	0.5	0;1	0;1	n	1.00	2.0	0.0	4;0	0;0	n	0.71	5.0	2.0	4;6	3;1	n	1.00	1.5	0.0	1;2	0;0	n	0.70	3.5	1.5	4;3	2;1	n	1.00	5.0	0.0	2;8	0;0	n	0.60	1.5	1.0	3;0	2;0	n	0.60	3.0	2.0	4;2	2;2	y	1.00	3.0	0.0	2;4	0;0	n	0.33	1.0	2.0	0;2	0;4	n	ENSMUSG00000049115.16	Agtr1a	chr13	protein_coding	angiotensin II receptor, type 1a
known_NIR_4540	chr13	31084886	31090486	-	31084886;31089738	31089636;31090486	ES	ENSMUST00000102946.8	known	0.00	0	5.5	0	5;6	n	0.00	0	2.5	0	3;2	n	0.08	1	12.0	1	14;10	n	0.00	0	8.5	0	10;7	n	0.06	1	16.5	1	19;14	n	0.00	0	11.0	0	15;7	n	0.00	0	11.5	0	12;11	n	0.00	0	10.5	0	10;11	n	0.00	0	13.5	0	13;14	n	0.00	0	13.5	0	16;11	n	0.24	2	6.5	2	10;3	y	0.00	0	11.0	0	11;11	n	ENSMUSG00000021357.15	Exoc2	chr13	protein_coding	exocyst complex component 2
known_NIR_4541	chr13	31108623	31109706	-	31095233	31109706	A3SS	ENSMUST00000102946.8	known	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.07	1	14	1	14	n	0.00	0	17	0	17	n	0.12	1	7	1	7	n	0.13	2	13	2	13	y	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.00	0	15	0	15	n	0.10	1	9	1	9	n	0.00	0	10	0	10	n	ENSMUSG00000021357.15	Exoc2	chr13	protein_coding	exocyst complex component 2
known_NIR_4542	chr13	31124753	31130348	-	31124753	31157979	A5SS	ENSMUST00000021785.8	known	0.00	0	3	0	3	n	0.40	2	3	2	3	n	0.13	2	13	2	13	y	0.18	2	9	2	9	y	0.17	2	10	2	10	y	0.25	2	6	2	6	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.44	4	5	4	5	n	0.10	1	9	1	9	n	ENSMUSG00000021357.15	Exoc2	chr13	protein_coding	exocyst complex component 2
known_NIR_4543	chr13	32341820	32409118	-	32312082	32409118	A3SS	ENSMUST00000041859.9	known	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	44	0	44	n	0.00	0	3	0	3	n	0.00	0	22	0	22	n	0.07	2	27	2	27	y	0.00	0	16	0	16	n	0.00	0	26	0	26	n	0.00	0	16	0	16	n	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	ENSMUSG00000038372.15	Gmds	chr13	protein_coding	GDP-mannose 4, 6-dehydratase
known_NIR_4544	chr13	34115629	34119552	-	34115629	34180226	A5SS	ENSMUST00000076532.14	known	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	20	0	20	n	0.00	0	6	0	6	n	0.12	1	7	1	7	n	0.20	1	4	1	4	n	0.29	4	10	4	10	y	0.10	1	9	1	9	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	ENSMUSG00000060147.16	Serpinb6a	chr13	protein_coding	serine (or cysteine) peptidase inhibitor, clade B, member 6a
known_NIR_4545	chr13	34115629	34119556	-	34115629	34180226	A5SS	ENSMUST00000076532.14	known	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	20	0	20	n	0.14	1	6	1	6	n	0.12	1	7	1	7	n	0.00	0	4	0	4	n	0.17	2	10	2	10	y	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.14	1	6	1	6	n	ENSMUSG00000060147.16	Serpinb6a	chr13	protein_coding	serine (or cysteine) peptidase inhibitor, clade B, member 6a
known_NIR_4546	chr13	34115629	34119602	-	34115629	34119552	A5SS	ENSMUST00000171252.8	known	1.00	2	0	2	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.60	6	4	6	4	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000060147.16	Serpinb6a	chr13	protein_coding	serine (or cysteine) peptidase inhibitor, clade B, member 6a
known_NIR_4547	chr13	34115629	34119602	-	34115629	34180226	A5SS	ENSMUST00000076532.14	known	0.33	2	4	2	4	n	0.00	0	7	0	7	n	0.00	0	20	0	20	n	0.00	0	6	0	6	n	0.12	1	7	1	7	n	0.00	0	4	0	4	n	0.38	6	10	6	10	y	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.17	2	10	2	10	y	0.00	0	6	0	6	n	0.14	1	6	1	6	n	ENSMUSG00000060147.16	Serpinb6a	chr13	protein_coding	serine (or cysteine) peptidase inhibitor, clade B, member 6a
known_NIR_4548	chr13	34115629	34119905	-	34115629	34119556	5pMXE	ENSMUST00000167260.8	known	1.00	18	0	18	0	n	1.00	15	0	15	0	n	1.00	15	0	15	0	n	0.80	4	1	4	1	n	0.96	22	1	22	1	n	1.00	3	0	3	0	n	0.92	24	2	24	2	y	1.00	7	0	7	0	n	1.00	9	0	9	0	n	1.00	14	0	14	0	n	1.00	11	0	11	0	n	0.94	15	1	15	1	n	ENSMUSG00000060147.16	Serpinb6a	chr13	protein_coding	serine (or cysteine) peptidase inhibitor, clade B, member 6a
known_NIR_4549	chr13	34115629	34119905	-	34115629;34119777	34119556;34119905	ES	ENSMUST00000167163.8	known	0.97	18	0.5	18	0;1	n	0.91	15	1.5	15	0;3	n	1.00	15	0.0	15	0;0	n	0.73	4	1.5	4	1;2	n	0.96	22	1.0	22	1;1	n	0.86	3	0.5	3	0;1	n	0.87	24	3.5	24	2;5	y	1.00	7	0.0	7	0;0	n	0.86	9	1.5	9	0;3	n	0.97	14	0.5	14	0;1	n	0.96	11	0.5	11	0;1	n	0.94	15	1.0	15	1;1	n	ENSMUSG00000060147.16	Serpinb6a	chr13	protein_coding	serine (or cysteine) peptidase inhibitor, clade B, member 6a
known_NIR_4550	chr13	34115629	34180226	-	34115629	34119905	5pMXE	ENSMUST00000043552.17	known	0.18	4	18	4	18	y	0.32	7	15	7	15	y	0.57	20	15	20	15	y	0.60	6	4	6	4	y	0.24	7	22	7	22	y	0.57	4	3	4	3	n	0.29	10	24	10	24	y	0.56	9	7	9	7	y	0.31	4	9	4	9	y	0.42	10	14	10	14	y	0.35	6	11	6	11	y	0.29	6	15	6	15	y	ENSMUSG00000060147.16	Serpinb6a	chr13	protein_coding	serine (or cysteine) peptidase inhibitor, clade B, member 6a
known_NIR_4551	chr13	34115629;34119777	34119552;34119905	-	34115629	34119905	cassetteExon	ENSMUST00000043552.17	known	0.03	0.5	18	0;1	18	n	0.09	1.5	15	0;3	15	n	0.00	0.0	15	0;0	15	n	0.20	1.0	4	0;2	4	n	0.04	1.0	22	1;1	22	n	0.25	1.0	3	1;1	3	n	0.16	4.5	24	4;5	24	y	0.07	0.5	7	1;0	7	n	0.14	1.5	9	0;3	9	n	0.03	0.5	14	0;1	14	n	0.04	0.5	11	0;1	11	n	0.03	0.5	15	0;1	15	n	ENSMUSG00000060147.16	Serpinb6a	chr13	protein_coding	serine (or cysteine) peptidase inhibitor, clade B, member 6a
known_NIR_4552	chr13	34115629;34119777	34119602;34119905	-	34115629	34119905	cassetteExon	ENSMUST00000043552.17	known	0.08	1.5	18	2;1	18	n	0.09	1.5	15	0;3	15	n	0.00	0.0	15	0;0	15	n	0.20	1.0	4	0;2	4	n	0.04	1.0	22	1;1	22	n	0.14	0.5	3	0;1	3	n	0.19	5.5	24	6;5	24	y	0.00	0.0	7	0;0	7	n	0.14	1.5	9	0;3	9	n	0.10	1.5	14	2;1	14	n	0.04	0.5	11	0;1	11	n	0.06	1.0	15	1;1	15	n	ENSMUSG00000060147.16	Serpinb6a	chr13	protein_coding	serine (or cysteine) peptidase inhibitor, clade B, member 6a
known_NIR_4553	chr13	34148783	34150028	+	34148783	34156295	A3SS	ENSMUST00000220844.2	known	0.74	26	9	26	9	y	0.77	10	3	10	3	y	0.67	6	3	6	3	n	0.64	16	9	16	9	y	0.89	17	2	17	2	y	1.00	2	0	2	0	n	0.62	18	11	18	11	y	1.00	5	0	5	0	n	0.81	21	5	21	5	y	0.65	30	16	30	16	y	0.90	19	2	19	2	y	0.81	30	7	30	7	y	ENSMUSG00000046949.17	Nqo2	chr13	protein_coding	N-ribosyldihydronicotinamide quinone reductase 2
known_NIR_4554	chr13	34148783;34150109	34150028;34152173	+	34148783	34152173	cassetteExon	ENSMUST00000058978.9	known	0.26	18.0	51	26;10	51	y	0.21	12.0	46	10;14	46	y	0.35	6.5	12	6;7	12	y	0.20	23.5	92	16;31	92	y	0.22	19.5	71	17;22	71	y	0.15	2.5	14	2;3	14	y	0.21	19.5	72	18;21	72	y	0.31	4.0	9	5;3	9	y	0.23	24.5	84	21;28	84	y	0.18	27.5	124	30;25	124	y	0.28	25.5	66	19;32	66	y	0.19	36.5	152	30;43	152	y	ENSMUSG00000046949.17	Nqo2	chr13	protein_coding	N-ribosyldihydronicotinamide quinone reductase 2
known_NIR_4555	chr13	34148783;34152260	34152173;34156295	+	34148783	34156295	cassetteExon	ENSMUST00000220844.2	known	0.89	74.5	9	51;98	9	y	0.95	62.0	3	46;78	3	y	0.89	23.5	3	12;35	3	y	0.93	128.0	9	92;164	9	y	0.98	96.0	2	71;121	2	y	1.00	16.0	0	14;18	0	n	0.90	98.0	11	72;124	11	y	1.00	16.5	0	9;24	0	n	0.96	110.5	5	84;137	5	y	0.91	157.0	16	124;190	16	y	0.98	97.5	2	66;129	2	y	0.97	215.0	7	152;278	7	y	ENSMUSG00000046949.17	Nqo2	chr13	protein_coding	N-ribosyldihydronicotinamide quinone reductase 2
known_NIR_4556	chr13	34149035	34150028	+	34148783	34150028	A5SS	ENSMUST00000021843.13	known	0.00	0	26	0	26	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.00	0	17	0	17	n	0.00	0	2	0	2	n	0.00	0	18	0	18	n	0.00	0	5	0	5	n	0.00	0	21	0	21	n	0.03	1	30	1	30	n	0.14	3	19	3	19	y	0.00	0	30	0	30	n	ENSMUSG00000046949.17	Nqo2	chr13	protein_coding	N-ribosyldihydronicotinamide quinone reductase 2
known_NIR_4557	chr13	34180334	34186449	-	34180334	34186653	A5SS	ENSMUST00000076532.14	known	0.00	0	2	0	2	n	0.17	2	10	2	10	y	0.38	6	10	6	10	y	0.71	5	2	5	2	n	0.00	0	3	0	3	n	0.80	8	2	8	2	y	0.67	8	4	8	4	y	0.75	3	1	3	1	n	1.00	2	0	2	0	n	0.33	3	6	3	6	n	0.00	0	3	0	3	n	0.33	2	4	2	4	n	ENSMUSG00000060147.16	Serpinb6a	chr13	protein_coding	serine (or cysteine) peptidase inhibitor, clade B, member 6a
known_NIR_4558	chr13	34221861	34228407	+	34221752	34228407	A5SS	ENSMUST00000040656.8	known	0.00	1	304	1	304	n	0.01	4	321	4	321	y	0.00	0	113	0	113	n	0.01	2	379	2	379	y	0.01	2	388	2	388	y	0.00	0	96	0	96	n	0.00	0	425	0	425	n	0.00	0	154	0	154	n	0.02	6	318	6	318	y	0.01	4	519	4	519	y	0.01	3	366	3	366	y	0.00	0	411	0	411	n	ENSMUSG00000038286.12	Bphl	chr13	protein_coding	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)
known_NIR_4559	chr13	34228510	34234264	+	34228510;34230935	34230769;34234264	ES	ENSMUST00000040656.8	known	0.01	3	440.5	3	460;421	y	0.01	4	364.5	4	349;380	y	0.02	3	149.5	3	156;143	y	0.01	7	464.5	7	492;437	y	0.02	7	444.0	7	476;412	y	0.04	4	103.5	4	120;87	y	0.03	17	575.0	17	606;544	y	0.02	3	165.5	3	163;168	y	0.02	10	412.0	10	425;399	y	0.02	11	661.0	11	687;635	y	0.03	13	455.5	13	478;433	y	0.03	15	504.5	15	542;467	y	ENSMUSG00000038286.12	Bphl	chr13	protein_coding	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)
known_NIR_4560	chr13	34228510	34234264	+	34230935	34234264	A5SS&ES	ENSMUST00000222691.2	known	0.01	3	421	3	421	y	0.01	4	380	4	380	y	0.02	3	143	3	143	y	0.02	7	437	7	437	y	0.02	7	412	7	412	y	0.04	4	87	4	87	y	0.03	17	544	17	544	y	0.02	3	168	3	168	y	0.02	10	399	10	399	y	0.02	11	635	11	635	y	0.03	13	433	13	433	y	0.03	15	467	15	467	y	ENSMUSG00000038286.12	Bphl	chr13	protein_coding	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)
known_NIR_4561	chr13	34244548	34257659	+	34244548	34247893	3pMXE	ENSMUST00000222658.2	known	0.01	3	584	3	584	y	0.02	9	566	9	566	y	0.02	4	175	4	175	y	0.01	3	591	3	591	y	0.02	11	613	11	613	y	0.02	4	176	4	176	y	0.01	10	776	10	776	y	0.04	9	204	9	204	y	0.02	9	547	9	547	y	0.01	13	866	13	866	y	0.02	13	781	13	781	y	0.01	7	622	7	622	y	ENSMUSG00000038286.12	Bphl	chr13	protein_coding	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)
known_NIR_4562	chr13	34244548	34257659	+	34244548;34248016	34247893;34257659	ES	ENSMUST00000040656.8	known	0.00	3	613.0	3	584;642	y	0.01	9	650.0	9	566;734	y	0.02	4	187.0	4	175;199	y	0.00	3	631.5	3	591;672	y	0.02	11	670.0	11	613;727	y	0.03	4	154.0	4	176;132	y	0.01	10	821.5	10	776;867	y	0.04	9	219.5	9	204;235	y	0.02	9	566.5	9	547;586	y	0.01	13	951.5	13	866;1037	y	0.02	13	797.0	13	781;813	y	0.01	7	668.0	7	622;714	y	ENSMUSG00000038286.12	Bphl	chr13	protein_coding	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)
known_NIR_4563	chr13	34347232;34350119	34350044;34361964	+	34347232	34361964	cassetteExon	ENSMUST00000124996.8	known	0.61	55.5	35	45;66	35	y	0.62	70.5	44	59;82	44	y	0.75	84.0	28	83;85	28	y	0.64	46.0	26	44;48	26	y	0.70	73.5	31	70;77	31	y	0.62	36.0	22	27;45	22	y	0.60	52.5	35	55;50	35	y	0.60	35.0	23	34;36	23	y	0.65	47.0	25	43;51	25	y	0.61	70.5	46	63;78	46	y	0.66	57.5	30	56;59	30	y	0.59	64.5	45	63;66	45	y	ENSMUSG00000071451.11	Psmg4	chr13	protein_coding	proteasome (prosome, macropain) assembly chaperone 4
known_NIR_4564	chr13	34405382	34405886	-	34388027	34405886	A3SS	ENSMUST00000148390.3	known	0.02	1	45	1	45	n	0.06	2	33	2	33	y	0.00	0	52	0	52	n	0.00	0	63	0	63	n	0.00	0	101	0	101	n	0.00	0	53	0	53	n	0.00	0	75	0	75	n	0.03	2	59	2	59	y	0.00	0	64	0	64	n	0.02	3	128	3	128	y	0.00	0	69	0	69	n	0.02	2	81	2	81	y	ENSMUSG00000038267.16	Slc22a23	chr13	protein_coding	solute carrier family 22, member 23
known_NIR_4565	chr13	34483134	34528142	-	34483134;34489244	34489141;34528142	ES	ENSMUST00000148390.3	known	0.06	2	34.0	2	29;39	y	0.00	0	38.5	0	35;42	n	0.00	0	46.0	0	52;40	n	0.00	0	54.5	0	52;57	n	0.05	4	78.0	4	83;73	y	0.00	0	43.5	0	46;41	n	0.00	0	52.5	0	47;58	n	0.00	0	50.0	0	45;55	n	0.03	1	34.0	1	42;26	n	0.00	0	86.5	0	87;86	n	0.06	3	43.5	3	43;44	y	0.02	1	48.5	1	40;57	n	ENSMUSG00000038267.16	Slc22a23	chr13	protein_coding	solute carrier family 22, member 23
known_NIR_4566	chr13	34814445;34821290	34821137;34822148	-	34814445	34822148	cassetteExon	ENSMUST00000053459.15	known	0.03	4.5	135	3;6	135	y	0.04	6.0	153	7;5	153	y	0.06	13.5	198	13;14	198	y	0.04	6.0	155	4;8	155	y	0.04	11.5	251	7;16	251	y	0.02	2.0	104	1;3	104	n	0.05	10.5	220	6;15	220	y	0.05	5.5	114	3;8	114	y	0.04	7.0	170	4;10	170	y	0.05	14.5	280	7;22	280	y	0.09	20.0	201	10;30	201	y	0.06	11.0	180	5;17	180	y	ENSMUSG00000021411.17	Pxdc1	chr13	protein_coding	PX domain containing 1
known_NIR_4567	chr13	34822265	34822995	-	34822265	34822990	A5SS	ENSMUST00000053459.15	known	0.01	2	144	2	144	y	0.00	0	120	0	120	n	0.01	2	205	2	205	y	0.01	2	161	2	161	y	0.00	0	209	0	209	n	0.01	1	115	1	115	n	0.01	1	181	1	181	n	0.00	0	125	0	125	n	0.00	0	173	0	173	n	0.00	1	243	1	243	n	0.00	0	180	0	180	n	0.01	2	198	2	198	y	ENSMUSG00000021411.17	Pxdc1	chr13	protein_coding	PX domain containing 1
known_NIR_4568	chr13	35076146;35077405	35077300;35077744	+	35076146	35077744	cassetteExon	ENSMUST00000077853.5	known	0.11	6.0	50	5;7	50	y	0.08	3.5	43	5;2	43	y	0.08	7.0	83	4;10	83	y	0.10	7.5	64	6;9	64	y	0.13	9.5	66	6;13	66	y	0.03	1.5	47	1;2	47	n	0.10	6.5	59	8;5	59	y	0.13	8.5	56	11;6	56	y	0.05	2.5	46	2;3	46	y	0.10	6.5	56	6;7	56	y	0.28	9.5	24	9;10	24	y	0.07	3.5	45	3;4	45	y	ENSMUSG00000021413.10	Prpf4b	chr13	protein_coding	pre-mRNA processing factor 4B
known_NIR_4569	chr13	35083206;35083438	35083298;35083814	+	35083206	35083814	cassetteExon	ENSMUST00000077853.5	known	0.02	1.0	53	1;1	53	n	0.10	5.0	46	7;3	46	y	0.01	1.0	80	0;2	80	n	0.07	3.5	47	0;7	47	n	0.04	3.0	74	3;3	74	y	0.00	0.0	37	0;0	37	n	0.07	3.5	48	3;4	48	y	0.07	3.5	46	6;1	46	n	0.06	2.0	31	2;2	31	y	0.04	3.0	71	5;1	71	n	0.09	3.0	29	2;4	29	y	0.04	2.5	57	0;5	57	n	ENSMUSG00000021413.10	Prpf4b	chr13	protein_coding	pre-mRNA processing factor 4B
known_NIR_4570	chr13	35087256	35088027	+	35087256	35087513	3pMXE	ENSMUST00000221087.2	known	0.55	24	20	24	20	y	0.39	19	30	19	30	y	0.59	29	20	29	20	y	0.50	16	16	16	16	y	0.54	26	22	26	22	y	0.46	18	21	18	21	y	0.59	26	18	26	18	y	0.49	19	20	19	20	y	0.38	5	8	5	8	y	0.46	21	25	21	25	y	0.45	19	23	19	23	y	0.65	17	9	17	9	y	ENSMUSG00000021413.10	Prpf4b	chr13	protein_coding	pre-mRNA processing factor 4B
known_NIR_4571	chr13	35087256;35087585	35087513;35088027	+	35087256	35088027	cassetteExon	ENSMUST00000220965.2	known	0.37	14.0	24	20;8	24	y	0.58	26.0	19	30;22	19	y	0.36	16.5	29	20;13	29	y	0.48	14.5	16	16;13	16	y	0.42	18.5	26	22;15	26	y	0.45	14.5	18	21;8	18	y	0.31	11.5	26	18;5	26	y	0.41	13.0	19	20;6	19	y	0.68	10.5	5	8;13	5	y	0.45	17.0	21	25;9	21	y	0.46	16.5	19	23;10	19	y	0.31	7.5	17	9;6	17	y	ENSMUSG00000021413.10	Prpf4b	chr13	protein_coding	pre-mRNA processing factor 4B
known_NIR_4572	chr13	35172335	35173513	-	35172335	35174164	A5SS	ENSMUST00000171229.8	known	0.01	5	716	5	716	y	0.01	7	796	7	796	y	0.01	15	1411	15	1411	y	0.01	7	932	7	932	y	0.01	13	1290	13	1290	y	0.00	4	834	4	834	y	0.01	24	1825	24	1825	y	0.01	11	865	11	865	y	0.01	8	669	8	669	y	0.01	14	1229	14	1229	y	0.01	11	981	11	981	y	0.01	12	804	12	804	y	ENSMUSG00000021417.16	Eci2	chr13	protein_coding	enoyl-Coenzyme A delta isomerase 2
known_NIR_4573	chr13	35177203	35177813	-	35177203	35177997	A5SS	ENSMUST00000178421.8	known	0.54	58	50	58	50	y	0.63	57	34	57	34	y	0.64	116	66	116	66	y	0.59	84	58	84	58	y	0.63	107	63	107	63	y	0.60	52	34	52	34	y	0.68	173	83	173	83	y	0.73	83	30	83	30	y	0.51	48	47	48	47	y	0.60	96	65	96	65	y	0.53	59	52	59	52	y	0.71	72	29	72	29	y	ENSMUSG00000021417.16	Eci2	chr13	protein_coding	enoyl-Coenzyme A delta isomerase 2
known_NIR_4574	chr13	35177203	35177813	-	35177203	35210992	A5SS	ENSMUST00000163280.8	known	0.75	58	19	58	19	y	0.86	57	9	57	9	y	0.80	116	29	116	29	y	0.79	84	23	84	23	y	0.79	107	29	107	29	y	0.88	52	7	52	7	y	0.79	173	45	173	45	y	0.85	83	15	83	15	y	0.86	48	8	48	8	y	0.84	96	18	96	18	y	0.72	59	23	59	23	y	0.88	72	10	72	10	y	ENSMUSG00000021417.16	Eci2	chr13	protein_coding	enoyl-Coenzyme A delta isomerase 2
known_NIR_4575	chr13	35177203	35177813	-	35177213	35177813	A3SS	ENSMUST00000021854.14	known	0.31	58	131	58	131	y	0.30	57	132	57	132	y	0.28	116	296	116	296	y	0.30	84	197	84	197	y	0.26	107	302	107	302	y	0.22	52	180	52	180	y	0.34	173	329	173	329	y	0.30	83	194	83	194	y	0.31	48	105	48	105	y	0.28	96	242	96	242	y	0.26	59	167	59	167	y	0.25	72	216	72	216	y	ENSMUSG00000021417.16	Eci2	chr13	protein_coding	enoyl-Coenzyme A delta isomerase 2
known_NIR_4576	chr13	35177203	35177997	-	35177213	35177997	A3SS	ENSMUST00000171229.8	known	0.31	50	110	50	110	y	0.28	34	88	34	88	y	0.35	66	123	66	123	y	0.27	58	155	58	155	y	0.28	63	163	63	163	y	0.30	34	79	34	79	y	0.32	83	178	83	178	y	0.24	30	96	30	96	y	0.32	47	102	47	102	y	0.29	65	157	65	157	y	0.33	52	107	52	107	y	0.19	29	126	29	126	y	ENSMUSG00000021417.16	Eci2	chr13	protein_coding	enoyl-Coenzyme A delta isomerase 2
known_NIR_4577	chr13	35177203	35210992	-	35177203	35177997	5pMXE	ENSMUST00000178421.8	known	0.28	19	50	19	50	y	0.21	9	34	9	34	y	0.31	29	66	29	66	y	0.28	23	58	23	58	y	0.32	29	63	29	63	y	0.17	7	34	7	34	y	0.35	45	83	45	83	y	0.33	15	30	15	30	y	0.15	8	47	8	47	y	0.22	18	65	18	65	y	0.31	23	52	23	52	y	0.26	10	29	10	29	y	ENSMUSG00000021417.16	Eci2	chr13	protein_coding	enoyl-Coenzyme A delta isomerase 2
known_NIR_4578	chr13	35177203	35210992	-	35177213	35210992	A3SS	ENSMUST00000170538.8	known	0.39	19	30	19	30	y	0.23	9	31	9	31	y	0.35	29	53	29	53	y	0.38	23	38	23	38	y	0.31	29	65	29	65	y	0.29	7	17	7	17	y	0.38	45	75	45	75	y	0.28	15	38	15	38	y	0.40	8	12	8	12	y	0.23	18	61	18	61	y	0.40	23	35	23	35	y	0.21	10	37	10	37	y	ENSMUSG00000021417.16	Eci2	chr13	protein_coding	enoyl-Coenzyme A delta isomerase 2
known_NIR_4579	chr13	35177213	35177813	-	35177213	35177997	A5SS	ENSMUST00000171229.8	known	0.54	131	110	131	110	y	0.60	132	88	132	88	y	0.71	296	123	296	123	y	0.56	197	155	197	155	y	0.65	302	163	302	163	y	0.69	180	79	180	79	y	0.65	329	178	329	178	y	0.67	194	96	194	96	y	0.51	105	102	105	102	y	0.61	242	157	242	157	y	0.61	167	107	167	107	y	0.63	216	126	216	126	y	ENSMUSG00000021417.16	Eci2	chr13	protein_coding	enoyl-Coenzyme A delta isomerase 2
known_NIR_4580	chr13	35177213	35210992	-	35177213	35177813	5pMXE	ENSMUST00000021854.14	known	0.19	30	131	30	131	y	0.19	31	132	31	132	y	0.15	53	296	53	296	y	0.16	38	197	38	197	y	0.18	65	302	65	302	y	0.09	17	180	17	180	y	0.19	75	329	75	329	y	0.16	38	194	38	194	y	0.10	12	105	12	105	y	0.20	61	242	61	242	y	0.17	35	167	35	167	y	0.15	37	216	37	216	y	ENSMUSG00000021417.16	Eci2	chr13	protein_coding	enoyl-Coenzyme A delta isomerase 2
known_NIR_4581	chr13	35177213	35210992	-	35177213	35177997	5pMXE	ENSMUST00000171229.8	known	0.21	30	110	30	110	y	0.26	31	88	31	88	y	0.30	53	123	53	123	y	0.20	38	155	38	155	y	0.29	65	163	65	163	y	0.18	17	79	17	79	y	0.30	75	178	75	178	y	0.28	38	96	38	96	y	0.11	12	102	12	102	y	0.28	61	157	61	157	y	0.25	35	107	35	107	y	0.23	37	126	37	126	y	ENSMUSG00000021417.16	Eci2	chr13	protein_coding	enoyl-Coenzyme A delta isomerase 2
known_NIR_4582	chr13	35177311	35177813	-	35177203	35177813	A3SS	ENSMUST00000170989.8	known	0.45	48	58	48	58	y	0.35	31	57	31	57	y	0.51	122	116	122	116	y	0.40	56	84	56	84	y	0.37	63	107	63	107	y	0.50	51	52	51	52	y	0.29	70	173	70	173	y	0.33	41	83	41	83	y	0.46	41	48	41	48	y	0.45	79	96	79	96	y	0.46	50	59	50	59	y	0.36	41	72	41	72	y	ENSMUSG00000021417.16	Eci2	chr13	protein_coding	enoyl-Coenzyme A delta isomerase 2
known_NIR_4583	chr13	35177311	35177813	-	35177213	35177813	A3SS	ENSMUST00000021854.14	known	0.27	48	131	48	131	y	0.19	31	132	31	132	y	0.29	122	296	122	296	y	0.22	56	197	56	197	y	0.17	63	302	63	302	y	0.22	51	180	51	180	y	0.18	70	329	70	329	y	0.17	41	194	41	194	y	0.28	41	105	41	105	y	0.25	79	242	79	242	y	0.23	50	167	50	167	y	0.16	41	216	41	216	y	ENSMUSG00000021417.16	Eci2	chr13	protein_coding	enoyl-Coenzyme A delta isomerase 2
known_NIR_4584	chr13	35177311	35177813	-	35177311	35177997	A5SS	ENSMUST00000167036.8	known	0.62	48	29	48	29	y	0.46	31	36	31	36	y	0.62	122	76	122	76	y	0.62	56	34	56	34	y	0.57	63	47	63	47	y	0.55	51	42	51	42	y	0.54	70	59	70	59	y	0.59	41	29	41	29	y	0.59	41	29	41	29	y	0.66	79	41	79	41	y	0.75	50	17	50	17	y	0.53	41	37	41	37	y	ENSMUSG00000021417.16	Eci2	chr13	protein_coding	enoyl-Coenzyme A delta isomerase 2
known_NIR_4585	chr13	35177311	35177997	-	35177203	35177997	A3SS	ENSMUST00000178421.8	known	0.37	29	50	29	50	y	0.51	36	34	36	34	y	0.54	76	66	76	66	y	0.37	34	58	34	58	y	0.43	47	63	47	63	y	0.55	42	34	42	34	y	0.42	59	83	59	83	y	0.49	29	30	29	30	y	0.38	29	47	29	47	y	0.39	41	65	41	65	y	0.25	17	52	17	52	y	0.56	37	29	37	29	y	ENSMUSG00000021417.16	Eci2	chr13	protein_coding	enoyl-Coenzyme A delta isomerase 2
known_NIR_4586	chr13	35177311	35177997	-	35177213	35177997	A3SS	ENSMUST00000171229.8	known	0.21	29	110	29	110	y	0.29	36	88	36	88	y	0.38	76	123	76	123	y	0.18	34	155	34	155	y	0.22	47	163	47	163	y	0.35	42	79	42	79	y	0.25	59	178	59	178	y	0.23	29	96	29	96	y	0.22	29	102	29	102	y	0.21	41	157	41	157	y	0.14	17	107	17	107	y	0.23	37	126	37	126	y	ENSMUSG00000021417.16	Eci2	chr13	protein_coding	enoyl-Coenzyme A delta isomerase 2
known_NIR_4587	chr13	35191982	35210992	-	35177203	35210992	A3SS	ENSMUST00000163280.8	known	0.14	3	19	3	19	y	0.10	1	9	1	9	n	0.37	17	29	17	29	y	0.15	4	23	4	23	y	0.19	7	29	7	29	y	0.68	15	7	15	7	y	0.15	8	45	8	45	y	0.32	7	15	7	15	y	0.27	3	8	3	8	y	0.50	18	18	18	18	y	0.23	7	23	7	23	y	0.33	5	10	5	10	y	ENSMUSG00000021417.16	Eci2	chr13	protein_coding	enoyl-Coenzyme A delta isomerase 2
known_NIR_4588	chr13	35191982	35210992	-	35177213	35210992	A3SS	ENSMUST00000170538.8	known	0.09	3	30	3	30	y	0.03	1	31	1	31	n	0.24	17	53	17	53	y	0.10	4	38	4	38	y	0.10	7	65	7	65	y	0.47	15	17	15	17	y	0.10	8	75	8	75	y	0.16	7	38	7	38	y	0.20	3	12	3	12	y	0.23	18	61	18	61	y	0.17	7	35	7	35	y	0.12	5	37	5	37	y	ENSMUSG00000021417.16	Eci2	chr13	protein_coding	enoyl-Coenzyme A delta isomerase 2
known_NIR_4589	chr13	3601088	3604442	+	3601088	3604412	A3SS	ENSMUST00000223396.2	known	0.03	11	389	11	389	y	0.02	5	270	5	270	y	0.02	11	485	11	485	y	0.03	16	498	16	498	y	0.02	14	548	14	548	y	0.02	5	273	5	273	y	0.02	7	409	7	409	y	0.03	10	307	10	307	y	0.05	18	373	18	373	y	0.03	19	562	19	562	y	0.01	4	362	4	362	y	0.02	13	566	13	566	y	ENSMUSG00000021218.11	Gdi2	chr13	protein_coding	guanosine diphosphate (GDP) dissociation inhibitor 2
known_NIR_4590	chr13	3610091	3610253	+	3610091	3611866	A3SS	ENSMUST00000223396.2	known	0.00	0	491	0	491	n	0.00	0	467	0	467	n	0.00	3	647	3	647	y	0.00	0	588	0	588	n	0.00	2	694	2	694	y	0.00	0	356	0	356	n	0.00	0	622	0	622	n	0.00	0	378	0	378	n	0.00	0	464	0	464	n	0.00	0	722	0	722	n	0.00	0	539	0	539	n	0.00	0	692	0	692	n	ENSMUSG00000021218.11	Gdi2	chr13	protein_coding	guanosine diphosphate (GDP) dissociation inhibitor 2
known_NIR_4591	chr13	3627200	3632082	-	3627200	3631752	A5SS	ENSMUST00000096069.5	known	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.20	2	8	2	8	y	0.00	0	9	0	9	n	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.30	3	7	3	7	y	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	ENSMUSG00000033799.11	Tasor2	chr13	protein_coding	transcription activation suppressor family member 2
known_NIR_4592	chr13	36301776	36388492	+	36301988	36388492	A5SS	ENSMUST00000021857.13	known	0.00	0	51	0	51	n	0.00	0	40	0	40	n	0.06	2	31	2	31	y	0.02	1	45	1	45	n	0.01	1	77	1	77	n	0.06	2	31	2	31	y	0.01	1	72	1	72	n	0.07	3	40	3	40	y	0.00	0	51	0	51	n	0.00	0	82	0	82	n	0.00	0	59	0	59	n	0.04	2	46	2	46	y	ENSMUSG00000021420.14	Fars2	chr13	protein_coding	phenylalanine-tRNA synthetase 2 (mitochondrial)
known_NIR_4593	chr13	36301988	36388492	+	36301988	36416105	A3SS	ENSMUST00000099582.4	known	0.96	51	2	51	2	y	0.91	40	4	40	4	y	1.00	31	0	31	0	n	0.92	45	4	45	4	y	0.95	77	4	77	4	y	0.97	31	1	31	1	n	0.97	72	2	72	2	y	1.00	40	0	40	0	n	1.00	51	0	51	0	n	1.00	82	0	82	0	n	1.00	59	0	59	0	n	0.96	46	2	46	2	y	ENSMUSG00000021420.14	Fars2	chr13	protein_coding	phenylalanine-tRNA synthetase 2 (mitochondrial)
known_NIR_4594	chr13	36301988	36416105	+	36301988;36389124	36388492;36416105	ES	ENSMUST00000021857.13	known	0.03	2	57.5	2	51;64	y	0.07	4	56.5	4	40;73	y	0.00	0	37.5	0	31;44	n	0.06	4	61.5	4	45;78	y	0.04	4	89.0	4	77;101	y	0.02	1	43.0	1	31;55	n	0.02	2	90.5	2	72;109	y	0.00	0	39.0	0	40;38	n	0.00	0	63.5	0	51;76	n	0.00	0	99.0	0	82;116	n	0.00	0	69.5	0	59;80	n	0.03	2	75.0	2	46;104	y	ENSMUSG00000021420.14	Fars2	chr13	protein_coding	phenylalanine-tRNA synthetase 2 (mitochondrial)
known_NIR_4595	chr13	36301988;36332427	36332344;36388492	+	36301988	36388492	cassetteExon	ENSMUST00000021857.13	known	0.00	0.0	51	0;0	51	n	0.02	1.0	40	0;2	40	n	0.02	0.5	31	0;1	31	n	0.02	1.0	45	0;2	45	n	0.01	0.5	77	1;0	77	n	0.00	0.0	31	0;0	31	n	0.00	0.0	72	0;0	72	n	0.00	0.0	40	0;0	40	n	0.00	0.0	51	0;0	51	n	0.01	0.5	82	0;1	82	n	0.03	2.0	59	2;2	59	y	0.03	1.5	46	1;2	46	n	ENSMUSG00000021420.14	Fars2	chr13	protein_coding	phenylalanine-tRNA synthetase 2 (mitochondrial)
known_NIR_4596	chr13	36389124	36416105	+	36301988	36416105	A5SS	ENSMUST00000099582.4	known	0.97	64	2	64	2	y	0.95	73	4	73	4	y	1.00	44	0	44	0	n	0.95	78	4	78	4	y	0.96	101	4	101	4	y	0.98	55	1	55	1	n	0.98	109	2	109	2	y	1.00	38	0	38	0	n	1.00	76	0	76	0	n	1.00	116	0	116	0	n	1.00	80	0	80	0	n	0.98	104	2	104	2	y	ENSMUSG00000021420.14	Fars2	chr13	protein_coding	phenylalanine-tRNA synthetase 2 (mitochondrial)
known_NIR_4597	chr13	36430477	36486823	+	36430477	36525920	A3SS	ENSMUST00000021857.13	known	0.04	3	70	3	70	y	0.00	0	78	0	78	n	0.00	0	54	0	54	n	0.00	0	67	0	67	n	0.00	0	68	0	68	n	0.00	0	26	0	26	n	0.00	0	114	0	114	n	0.03	1	37	1	37	n	0.00	0	69	0	69	n	0.00	0	106	0	106	n	0.01	1	86	1	86	n	0.00	0	91	0	91	n	ENSMUSG00000021420.14	Fars2	chr13	protein_coding	phenylalanine-tRNA synthetase 2 (mitochondrial)
known_NIR_4598	chr13	36510995	36525920	+	36430477	36525920	A5SS	ENSMUST00000021857.13	known	0.00	0	70	0	70	n	0.03	2	78	2	78	y	0.00	0	54	0	54	n	0.00	0	67	0	67	n	0.01	1	68	1	68	n	0.04	1	26	1	26	n	0.01	1	114	1	114	n	0.10	4	37	4	37	y	0.07	5	69	5	69	y	0.03	3	106	3	106	y	0.03	3	86	3	86	y	0.01	1	91	1	91	n	ENSMUSG00000021420.14	Fars2	chr13	protein_coding	phenylalanine-tRNA synthetase 2 (mitochondrial)
known_NIR_4599	chr13	36594213	36597456	+	36594213	36721275	A3SS	ENSMUST00000021857.13	known	0.00	0	108	0	108	n	0.00	0	104	0	104	n	0.01	1	85	1	85	n	0.01	1	77	1	77	n	0.00	0	106	0	106	n	0.00	0	44	0	44	n	0.01	1	112	1	112	n	0.00	0	58	0	58	n	0.00	0	94	0	94	n	0.02	3	155	3	155	y	0.00	0	110	0	110	n	0.02	2	108	2	108	y	ENSMUSG00000021420.14	Fars2	chr13	protein_coding	phenylalanine-tRNA synthetase 2 (mitochondrial)
known_NIR_4600	chr13	3684175	3684414	+	3684175	3692065	A3SS	ENSMUST00000042288.8	known	0.02	1	55	1	55	n	0.00	0	31	0	31	n	0.08	4	47	4	47	y	0.01	1	90	1	90	n	0.03	3	106	3	106	y	0.00	0	39	0	39	n	0.00	0	89	0	89	n	0.05	2	42	2	42	y	0.04	2	55	2	55	y	0.00	0	104	0	104	n	0.01	1	74	1	74	n	0.01	1	80	1	80	n	ENSMUSG00000033781.8	Asb13	chr13	protein_coding	ankyrin repeat and SOCS box-containing 13
known_NIR_4601	chr13	36914225	36915618	-	36914225	36918210	A5SS	ENSMUST00000037623.15	known	0.00	3	636	3	636	y	0.00	2	450	2	450	y	0.02	3	120	3	120	y	0.01	4	532	4	532	y	0.00	3	663	3	663	y	0.04	4	92	4	92	y	0.00	1	601	1	601	n	0.01	2	207	2	207	y	0.00	2	650	2	650	y	0.00	2	791	2	791	y	0.00	0	570	0	570	n	0.00	3	1072	3	1072	y	ENSMUSG00000039114.17	Nrn1	chr13	protein_coding	neuritin 1
known_NIR_4602	chr13	3699374	3700180	+	3699510	3700180	A5SS	ENSMUST00000042288.8	known	0.01	1	137	1	137	n	0.02	2	114	2	114	y	0.00	0	100	0	100	n	0.01	1	137	1	137	n	0.01	2	185	2	185	y	0.00	0	78	0	78	n	0.00	0	152	0	152	n	0.03	2	56	2	56	y	0.00	0	107	0	107	n	0.00	0	145	0	145	n	0.00	0	134	0	134	n	0.00	0	154	0	154	n	ENSMUSG00000033781.8	Asb13	chr13	protein_coding	ankyrin repeat and SOCS box-containing 13
known_NIR_4603	chr13	37842746	37850428	-	37842746	37851474	A5SS	ENSMUST00000225013.2	known	0.85	22	4	22	4	y	0.85	41	7	41	7	y	0.92	94	8	94	8	y	0.81	29	7	29	7	y	0.74	35	12	35	12	y	0.94	80	5	80	5	y	0.79	50	13	50	13	y	1.00	53	0	53	0	n	0.82	33	7	33	7	y	0.72	39	15	39	15	y	0.78	28	8	28	8	y	0.81	39	9	39	9	y	ENSMUSG00000114828.2	AI463229	chr13	lncRNA	expressed sequence AI463229
known_NIR_4604	chr13	37842746	37850747	-	37842746	37850428	5pMXE	ENSMUST00000225734.2	known	0.27	8	22	8	22	y	0.11	5	41	5	41	y	0.08	8	94	8	94	y	0.31	13	29	13	29	y	0.27	13	35	13	35	y	0.08	7	80	7	80	y	0.24	16	50	16	50	y	0.09	5	53	5	53	y	0.06	2	33	2	33	y	0.13	6	39	6	39	y	0.22	8	28	8	28	y	0.19	9	39	9	39	y	ENSMUSG00000114828.2	AI463229	chr13	lncRNA	expressed sequence AI463229
known_NIR_4605	chr13	37842746	37850747	-	37842746	37851474	A5SS	ENSMUST00000225013.2	known	0.67	8	4	8	4	y	0.42	5	7	5	7	y	0.50	8	8	8	8	y	0.65	13	7	13	7	y	0.52	13	12	13	12	y	0.58	7	5	7	5	y	0.55	16	13	16	13	y	1.00	5	0	5	0	n	0.22	2	7	2	7	n	0.29	6	15	6	15	y	0.50	8	8	8	8	y	0.50	9	9	9	9	y	ENSMUSG00000114828.2	AI463229	chr13	lncRNA	expressed sequence AI463229
known_NIR_4606	chr13	38010320	38072847	+	38010028	38072847	A5SS	ENSMUST00000138043.8	known	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	10	0	10	0	n	1.00	1	0	1	0	n	0.92	12	1	12	1	n	0.86	6	1	6	1	n	1.00	3	0	3	0	n	1.00	8	0	8	0	n	1.00	3	0	3	0	n	0.93	13	1	13	1	n	1.00	1	0	1	0	n	0.75	9	3	9	3	y	ENSMUSG00000039087.18	Rreb1	chr13	protein_coding	ras responsive element binding protein 1
known_NIR_4607	chr13	38010951	38072847	+	38010320	38072847	A5SS	ENSMUST00000110238.10	known	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.09	1	10	1	10	n	0.75	3	1	3	1	n	0.25	4	12	4	12	y	0.45	5	6	5	6	y	0.79	11	3	11	3	y	0.27	3	8	3	8	y	0.57	4	3	4	3	n	0.24	4	13	4	13	y	0.50	1	1	1	1	n	0.36	5	9	5	9	y	ENSMUSG00000039087.18	Rreb1	chr13	protein_coding	ras responsive element binding protein 1
known_NIR_4608	chr13	38079174	38082388	+	38077960	38082388	A5SS	ENSMUST00000110238.10	known	0.08	1	12	1	12	n	0.11	1	8	1	8	n	0.00	0	19	0	19	n	0.00	0	17	0	17	n	0.05	1	21	1	21	n	0.00	0	16	0	16	n	0.12	2	15	2	15	y	0.00	0	29	0	29	n	0.00	0	10	0	10	n	0.00	0	24	0	24	n	0.00	0	15	0	15	n	0.07	2	25	2	25	y	ENSMUSG00000039087.18	Rreb1	chr13	protein_coding	ras responsive element binding protein 1
known_NIR_4609	chr13	38116465	38130833	+	38116465;38125680	38125519;38130833	ES	ENSMUST00000128570.9	known	0.48	11	12.0	11	9;15	y	0.67	13	6.5	13	7;6	y	0.64	25	14.0	25	10;18	y	0.58	13	9.5	13	11;8	y	0.69	24	11.0	24	12;10	y	0.72	13	5.0	13	2;8	y	0.68	23	11.0	23	11;11	y	0.62	20	12.5	20	8;17	y	0.71	10	4.0	10	3;5	y	0.56	16	12.5	16	9;16	y	0.77	17	5.0	17	6;4	y	0.68	16	7.5	16	3;12	y	ENSMUSG00000039087.18	Rreb1	chr13	protein_coding	ras responsive element binding protein 1
known_NIR_4610	chr13	38131480	38132619	+	38131639	38132619	A5SS	ENSMUST00000128570.9	known	0.19	6	25	6	25	y	0.35	9	17	9	17	y	0.21	7	26	7	26	y	0.10	2	19	2	19	y	0.27	12	32	12	32	y	0.12	4	29	4	29	y	0.34	13	25	13	25	y	0.10	3	27	3	27	y	0.28	8	21	8	21	y	0.25	12	36	12	36	y	0.32	9	19	9	19	y	0.29	9	22	9	22	y	ENSMUSG00000039087.18	Rreb1	chr13	protein_coding	ras responsive element binding protein 1
known_NIR_4611	chr13	38163782	38167369	-	38163782;38167085	38167071;38167369	ES	ENSMUST00000225246.2	known	0.99	257	2.5	257	3;2	y	1.00	270	0.0	270	0;0	n	1.00	629	0.0	629	0;0	n	1.00	251	1.0	251	1;1	n	0.99	397	2.0	397	2;2	y	1.00	411	1.5	411	1;2	n	0.99	318	2.0	318	3;1	n	1.00	341	0.0	341	0;0	n	1.00	190	0.0	190	0;0	n	0.99	286	1.5	286	2;1	n	1.00	290	1.0	290	1;1	n	1.00	261	0.0	261	0;0	n	ENSMUSG00000021427.11	Ssr1	chr13	protein_coding	signal sequence receptor, alpha
known_NIR_4612	chr13	38176085	38177477	-	38176085	38177981	A5SS	ENSMUST00000225246.2	known	0.00	0	191	0	191	n	0.00	0	152	0	152	n	0.01	6	568	6	568	y	0.00	0	228	0	228	n	0.00	1	339	1	339	n	0.00	1	373	1	373	n	0.00	0	210	0	210	n	0.00	1	311	1	311	n	0.01	1	181	1	181	n	0.00	0	208	0	208	n	0.00	0	151	0	151	n	0.00	0	213	0	213	n	ENSMUSG00000021427.11	Ssr1	chr13	protein_coding	signal sequence receptor, alpha
known_NIR_4613	chr13	38227954	38231221	+	38227954;38229291	38229249;38231221	ES	ENSMUST00000021866.10	known	0.14	1	6.0	1	7;5	n	0.60	6	4.0	6	4;4	y	0.11	2	16.5	2	17;16	y	0.33	2	4.0	2	2;6	y	0.11	1	8.0	1	10;6	n	0.30	3	7.0	3	6;8	y	0.00	0	7.5	0	9;6	n	0.24	2	6.5	2	6;7	y	0.35	3	5.5	3	5;6	y	0.00	0	3.5	0	3;4	n	0.33	2	4.0	2	4;4	y	0.15	2	11.5	2	9;14	y	ENSMUSG00000021428.10	Riok1	chr13	protein_coding	RIO kinase 1
known_NIR_4614	chr13	38227954	38231221	+	38229291	38231221	A5SS	ENSMUST00000226006.2	known	0.17	1	5	1	5	n	0.60	6	4	6	4	y	0.11	2	16	2	16	y	0.25	2	6	2	6	n	0.14	1	6	1	6	n	0.27	3	8	3	8	y	0.00	0	6	0	6	n	0.22	2	7	2	7	n	0.33	3	6	3	6	n	0.00	0	4	0	4	n	0.33	2	4	2	4	n	0.12	2	14	2	14	y	ENSMUSG00000021428.10	Riok1	chr13	protein_coding	RIO kinase 1
known_NIR_4615	chr13	38375834	38378672	+	38377631	38378672	A5SS	ENSMUST00000124830.3	known	0.21	7	26	7	26	y	0.20	4	16	4	16	y	0.45	22	27	22	27	y	0.20	9	36	9	36	y	0.24	13	41	13	41	y	0.21	6	23	6	23	y	0.23	7	24	7	24	y	0.22	6	21	6	21	y	0.32	11	23	11	23	y	0.18	10	45	10	45	y	0.17	5	24	5	24	y	0.36	24	43	24	43	y	ENSMUSG00000054889.11	Dsp	chr13	protein_coding	desmoplakin
known_NIR_4616	chr13	38395117	38398581	+	38395117	38400301	A3SS	ENSMUST00000091641.13	known	0.05	2	39	2	39	y	0.11	3	25	3	25	y	0.13	3	20	3	20	y	0.09	3	32	3	32	y	0.37	14	24	14	24	y	0.50	6	6	6	6	y	0.17	5	25	5	25	y	0.23	7	23	7	23	y	0.07	2	26	2	26	y	0.11	6	51	6	51	y	0.20	6	24	6	24	y	0.10	7	64	7	64	y	ENSMUSG00000021431.16	Snrnp48	chr13	protein_coding	small nuclear ribonucleoprotein 48 (U11/U12)
known_NIR_4617	chr13	38707454	38711651	-	38707454	38712164	A5SS	ENSMUST00000035988.16	known	0.00	1	348	1	348	n	0.01	3	279	3	279	y	0.01	5	584	5	584	y	0.01	6	447	6	447	y	0.01	7	640	7	640	y	0.01	2	394	2	394	y	0.01	3	424	3	424	y	0.01	3	440	3	440	y	0.01	4	291	4	291	y	0.00	2	539	2	539	y	0.01	5	414	5	414	y	0.01	6	402	6	402	y	ENSMUSG00000038991.18	Txndc5	chr13	protein_coding	thioredoxin domain containing 5
known_NIR_4618	chr13	38707454	38712528	-	38707454	38711651	5pMXE	ENSMUST00000160653.2	known	0.75	3	1	3	1	n	0.67	6	3	6	3	n	0.29	2	5	2	5	n	0.54	7	6	7	6	y	0.50	7	7	7	7	y	0.00	0	2	0	2	n	0.50	3	3	3	3	n	0.50	3	3	3	3	n	0.43	3	4	3	4	n	0.71	5	2	5	2	n	0.50	5	5	5	5	y	0.54	7	6	7	6	y	ENSMUSG00000038991.18	Txndc5	chr13	protein_coding	thioredoxin domain containing 5
known_NIR_4619	chr13	38707454	38712528	-	38707454	38712164	5pMXE	ENSMUST00000035988.16	known	0.01	3	348	3	348	y	0.02	6	279	6	279	y	0.00	2	584	2	584	y	0.02	7	447	7	447	y	0.01	7	640	7	640	y	0.00	0	394	0	394	n	0.01	3	424	3	424	y	0.01	3	440	3	440	y	0.01	3	291	3	291	y	0.01	5	539	5	539	y	0.01	5	414	5	414	y	0.02	7	402	7	402	y	ENSMUSG00000038991.18	Txndc5	chr13	protein_coding	thioredoxin domain containing 5
known_NIR_4620	chr13	38788004	38796619	-	38777408	38796619	A3SS	ENSMUST00000224115.2	known	1.00	66	0	66	0	n	0.98	57	1	57	1	n	0.95	59	3	59	3	y	1.00	76	0	76	0	n	1.00	93	0	93	0	n	1.00	45	0	45	0	n	0.97	75	2	75	2	y	1.00	40	0	40	0	n	1.00	56	0	56	0	n	1.00	108	0	108	0	n	0.99	77	1	77	1	n	0.98	85	2	85	2	y	ENSMUSG00000038982.11	Bloc1s5	chr13	protein_coding	biogenesis of lysosomal organelles complex-1, subunit 5, muted
known_NIR_4621	chr13	39116892;39117564	39117432;39118714	-	39116892	39118714	cassetteExon	ENSMUST00000021870.12	known	0.06	2.0	30	4;0	30	n	0.00	0.0	30	0;0	30	n	0.04	3.5	78	7;0	78	n	0.01	0.5	35	1;0	35	n	0.06	2.5	36	3;2	36	y	0.03	1.0	39	2;0	39	n	0.09	4.0	42	8;0	42	n	0.03	1.0	32	2;0	32	n	0.09	2.5	24	5;0	24	n	0.06	1.5	22	2;1	22	n	0.11	2.0	16	4;0	16	n	0.02	0.5	26	1;0	26	n	ENSMUSG00000021432.16	Slc35b3	chr13	protein_coding	solute carrier family 35, member B3
known_NIR_4622	chr13	39127142	39138085	-	39127142;39128630	39128476;39138085	ES	ENSMUST00000021870.12	known	0.32	6	12.5	6	18;7	y	0.26	5	14.5	5	16;13	y	0.18	11	49.5	11	47;52	y	0.28	7	18.0	7	15;21	y	0.25	14	41.5	14	37;46	y	0.11	4	32.5	4	42;23	y	0.28	12	31.0	12	25;37	y	0.29	11	26.5	11	28;25	y	0.46	14	16.5	14	17;16	y	0.47	14	16.0	14	17;15	y	0.32	6	12.5	6	12;13	y	0.31	8	17.5	8	17;18	y	ENSMUSG00000021432.16	Slc35b3	chr13	protein_coding	solute carrier family 35, member B3
known_NIR_4623	chr13	39127142	39138085	-	39128630	39138085	3pMXE	ENSMUST00000225331.2	known	0.46	6	7	6	7	y	0.28	5	13	5	13	y	0.17	11	52	11	52	y	0.25	7	21	7	21	y	0.23	14	46	14	46	y	0.15	4	23	4	23	y	0.24	12	37	12	37	y	0.31	11	25	11	25	y	0.47	14	16	14	16	y	0.48	14	15	14	15	y	0.32	6	13	6	13	y	0.31	8	18	8	18	y	ENSMUSG00000021432.16	Slc35b3	chr13	protein_coding	solute carrier family 35, member B3
known_NIR_4624	chr13	39138206	39139797	-	39138206	39139625	A5SS	ENSMUST00000021870.12	known	0.14	4	24	4	24	y	0.14	3	19	3	19	y	0.11	7	54	7	54	y	0.19	5	22	5	22	y	0.16	11	59	11	59	y	0.12	5	38	5	38	y	0.13	5	34	5	34	y	0.12	4	28	4	28	y	0.00	0	22	0	22	n	0.11	4	31	4	31	y	0.14	3	18	3	18	y	0.19	5	21	5	21	y	ENSMUSG00000021432.16	Slc35b3	chr13	protein_coding	solute carrier family 35, member B3
known_NIR_4625	chr13	39139912	39144139	-	39139912	39144386	A5SS	ENSMUST00000167513.3	known	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.50	8	8	8	8	y	0.00	0	5	0	5	n	0.33	4	8	4	8	y	0.46	6	7	6	7	y	0.00	0	6	0	6	n	0.80	4	1	4	1	n	0.00	0	4	0	4	n	0.50	2	2	2	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000021432.16	Slc35b3	chr13	protein_coding	solute carrier family 35, member B3
known_NIR_4626	chr13	39139912	39144139	-	39139912	39144408	A5SS	ENSMUST00000225432.2	known	0.00	0	14	0	14	n	0.05	1	18	1	18	n	0.12	8	56	8	56	y	0.00	0	26	0	26	n	0.09	4	43	4	43	y	0.22	6	21	6	21	y	0.00	0	17	0	17	n	0.11	4	32	4	32	y	0.00	0	11	0	11	n	0.06	2	32	2	32	y	0.00	0	16	0	16	n	0.00	0	34	0	34	n	ENSMUSG00000021432.16	Slc35b3	chr13	protein_coding	solute carrier family 35, member B3
known_NIR_4627	chr13	39139912	39144139	-	39139912	39144589	A5SS	ENSMUST00000021870.12	known	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.36	8	14	8	14	y	-	-	-	-	-	-	0.80	4	1	4	1	n	0.75	6	2	6	2	n	-	-	-	-	-	-	1.00	4	0	4	0	n	-	-	-	-	-	-	1.00	2	0	2	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000021432.16	Slc35b3	chr13	protein_coding	solute carrier family 35, member B3
known_NIR_4628	chr13	39139912	39144386	-	39139912	39144408	A5SS	ENSMUST00000225432.2	known	0.12	2	14	2	14	y	0.05	1	18	1	18	n	0.12	8	56	8	56	y	0.16	5	26	5	26	y	0.16	8	43	8	43	y	0.25	7	21	7	21	y	0.26	6	17	6	17	y	0.03	1	32	1	32	n	0.27	4	11	4	11	y	0.06	2	32	2	32	y	0.20	4	16	4	16	y	0.06	2	34	2	34	y	ENSMUSG00000021432.16	Slc35b3	chr13	protein_coding	solute carrier family 35, member B3
known_NIR_4629	chr13	39139912	39144386	-	39139912	39144589	A5SS	ENSMUST00000021870.12	known	0.67	2	1	2	1	n	1.00	1	0	1	0	n	0.36	8	14	8	14	y	1.00	5	0	5	0	n	0.89	8	1	8	1	n	0.78	7	2	7	2	n	1.00	6	0	6	0	n	1.00	1	0	1	0	n	1.00	4	0	4	0	n	1.00	2	0	2	0	n	0.67	4	2	4	2	n	1.00	2	0	2	0	n	ENSMUSG00000021432.16	Slc35b3	chr13	protein_coding	solute carrier family 35, member B3
known_NIR_4630	chr13	39139912	39144408	-	39139912	39144589	A5SS	ENSMUST00000021870.12	known	0.93	14	1	14	1	n	1.00	18	0	18	0	n	0.80	56	14	56	14	y	1.00	26	0	26	0	n	0.98	43	1	43	1	n	0.91	21	2	21	2	y	1.00	17	0	17	0	n	1.00	32	0	32	0	n	1.00	11	0	11	0	n	1.00	32	0	32	0	n	0.89	16	2	16	2	y	1.00	34	0	34	0	n	ENSMUSG00000021432.16	Slc35b3	chr13	protein_coding	solute carrier family 35, member B3
known_NIR_4631	chr13	3932995	3943293	-	3938978	3943293	A3SS&ES	ENSMUST00000099946.6	known	0.00	0	61	0	61	n	0.00	0	23	0	23	n	0.00	0	104	0	104	n	0.00	0	69	0	69	n	0.07	7	98	7	98	y	0.00	0	46	0	46	n	0.00	0	99	0	99	n	0.00	0	79	0	79	n	0.00	0	61	0	61	n	0.00	0	82	0	82	n	0.00	0	53	0	53	n	0.00	0	70	0	70	n	ENSMUSG00000021215.16	Net1	chr13	protein_coding	neuroepithelial cell transforming gene 1
known_NIR_4632	chr13	3938978	3957797	-	3938978	3943293	5pMXE	ENSMUST00000099946.6	known	0.03	2	61	2	61	y	0.00	0	23	0	23	n	0.01	1	104	1	104	n	0.00	0	69	0	69	n	0.00	0	98	0	98	n	0.00	0	46	0	46	n	0.00	0	99	0	99	n	0.00	0	79	0	79	n	0.00	0	61	0	61	n	0.00	0	82	0	82	n	0.00	0	53	0	53	n	0.00	0	70	0	70	n	ENSMUSG00000021215.16	Net1	chr13	protein_coding	neuroepithelial cell transforming gene 1
known_NIR_4633	chr13	4099132	4101207	+	4098866	4101207	A5SS	ENSMUST00000210421.2	known	0.98	41	1	41	1	n	1.00	33	0	33	0	n	1.00	6	0	6	0	n	0.97	78	2	78	2	y	0.99	96	1	96	1	n	0.96	25	1	25	1	n	1.00	61	0	61	0	n	1.00	53	0	53	0	n	0.98	80	2	80	2	y	1.00	142	0	142	0	n	1.00	81	0	81	0	n	1.00	102	0	102	0	n	ENSMUSG00000110055.2	Gm18857	chr13	unprocessed_pseudogene	predicted gene, 18857
known_NIR_4634	chr13	41072277	41107052	+	41014749	41107052	A5SS	ENSMUST00000110191.10	known	0.00	0	25	0	25	n	0.00	0	19	0	19	n	0.21	14	54	14	54	y	0.00	0	33	0	33	n	0.07	3	40	3	40	y	0.08	2	22	2	22	y	0.11	5	41	5	41	y	0.05	1	20	1	20	n	0.12	2	15	2	15	y	0.02	1	41	1	41	n	0.00	0	26	0	26	n	0.00	0	24	0	24	n	ENSMUSG00000021360.17	Gcnt2	chr13	protein_coding	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme
known_NIR_4635	chr13	41100297	41107052	+	41014749	41107052	A5SS	ENSMUST00000110191.10	known	0.00	0	25	0	25	n	0.05	1	19	1	19	n	0.04	2	54	2	54	y	0.08	3	33	3	33	y	0.00	0	40	0	40	n	0.00	0	22	0	22	n	0.00	0	41	0	41	n	0.00	0	20	0	20	n	0.06	1	15	1	15	n	0.00	0	41	0	41	n	0.00	0	26	0	26	n	0.04	1	24	1	24	n	ENSMUSG00000021360.17	Gcnt2	chr13	protein_coding	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme
known_NIR_4636	chr13	41100297	41107052	+	41072277	41107052	A5SS	ENSMUST00000067778.8	known	-	-	-	-	-	-	1.00	1	0	1	0	n	0.12	2	14	2	14	y	1.00	3	0	3	0	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000021360.17	Gcnt2	chr13	protein_coding	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme
known_NIR_4637	chr13	41350674	41373513	-	41350674	41373831	A5SS	ENSMUST00000021793.15	known	0.03	4	130	4	130	y	0.01	1	94	1	94	n	0.03	2	78	2	78	y	0.04	12	261	12	261	y	0.02	5	211	5	211	y	0.00	0	38	0	38	n	0.02	3	162	3	162	y	0.00	0	73	0	73	n	0.02	4	157	4	157	y	0.02	5	300	5	300	y	0.03	5	170	5	170	y	0.02	5	304	5	304	y	ENSMUSG00000021364.17	Elovl2	chr13	protein_coding	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2
known_NIR_4638	chr13	41492496	41513095	-	41492496	41512329	5pMXE	ENSMUST00000163623.3	known	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	16	0	16	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.14	2	12	2	12	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021365.16	Nedd9	chr13	protein_coding	neural precursor cell expressed, developmentally down-regulated gene 9
known_NIR_4639	chr13	41759788;41781624	41781454;41787932	+	41759788	41787932	cassetteExon	ENSMUST00000221694.2	known	1.00	3.5	0	3;4	0	n	0.00	0.0	1	0;0	1	n	0.93	12.5	1	14;11	1	n	0.85	5.5	1	6;5	1	n	0.73	8.0	3	5;11	3	y	1.00	5.5	0	9;2	0	n	0.85	5.5	1	3;8	1	n	0.67	6.0	3	7;5	3	y	0.88	7.0	1	6;8	1	n	0.93	12.5	1	11;14	1	n	0.83	5.0	1	5;5	1	n	1.00	7.5	0	6;9	0	n	ENSMUSG00000087370.4	Tmem170b	chr13	protein_coding	transmembrane protein 170B
known_NIR_4640	chr13	41931099	41953974	-	41931099	41967691	A5SS	ENSMUST00000072012.10	known	0.00	0	528	0	528	n	0.00	0	582	0	582	n	0.00	0	891	0	891	n	0.00	2	648	2	648	y	0.00	2	717	2	717	y	0.00	0	469	0	469	n	0.00	1	923	1	923	n	0.00	0	477	0	477	n	0.00	0	556	0	556	n	0.00	2	803	2	803	y	0.00	1	694	1	694	n	0.00	0	521	0	521	n	ENSMUSG00000058022.15	Adtrp	chr13	protein_coding	androgen dependent TFPI regulating protein
known_NIR_4641	chr13	41931099;41964922	41964828;41967691	-	41931099	41967691	cassetteExon	ENSMUST00000072012.10	known	0.00	1.0	528	0;2	528	n	0.00	0.5	582	1;0	582	n	0.01	6.0	891	6;6	891	y	0.01	4.5	648	4;5	648	y	0.00	3.0	717	2;4	717	y	0.01	5.5	469	4;7	469	y	0.01	5.0	923	2;8	923	y	0.00	1.5	477	2;1	477	n	0.00	1.5	556	2;1	556	n	0.00	0.0	803	0;0	803	n	0.00	1.0	694	1;1	694	n	0.00	1.5	521	1;2	521	n	ENSMUSG00000058022.15	Adtrp	chr13	protein_coding	androgen dependent TFPI regulating protein
known_NIR_4642	chr13	41967792	41981619	-	41967792	41969614	A5SS&ES	ENSMUST00000223337.2	known	0.00	2	479	2	479	y	0.01	4	506	4	506	y	0.00	3	808	3	808	y	0.00	3	606	3	606	y	0.00	3	688	3	688	y	0.00	0	404	0	404	n	0.01	6	673	6	673	y	0.01	2	386	2	386	y	0.01	3	416	3	416	y	0.01	7	696	7	696	y	0.00	2	529	2	529	y	0.00	2	420	2	420	y	ENSMUSG00000058022.15	Adtrp	chr13	protein_coding	androgen dependent TFPI regulating protein
known_NIR_4643	chr13	41967792	41981619	-	41967792;41969748	41969614;41981619	ES	ENSMUST00000072012.10	known	0.00	2	429.5	2	479;380	y	0.01	4	407.5	4	506;309	y	0.00	3	717.5	3	808;627	y	0.01	3	543.0	3	606;480	y	0.00	3	619.5	3	688;551	y	0.00	0	360.5	0	404;317	n	0.01	6	623.0	6	673;573	y	0.01	2	361.0	2	386;336	y	0.01	3	374.0	3	416;332	y	0.01	7	626.5	7	696;557	y	0.00	2	492.0	2	529;455	y	0.01	2	374.0	2	420;328	y	ENSMUSG00000058022.15	Adtrp	chr13	protein_coding	androgen dependent TFPI regulating protein
known_NIR_4644	chr13	42321139;42322785	42322717;42334908	+	42321139	42334908	cassetteExon	ENSMUST00000060148.6	known	0.11	3.0	24	3;3	24	y	0.00	0.0	8	0;0	8	n	0.00	0.0	21	0;0	21	n	0.02	0.5	21	1;0	21	n	0.00	0.0	27	0;0	27	n	0.00	0.0	5	0;0	5	n	0.06	1.0	17	2;0	17	n	0.00	0.0	16	0;0	16	n	0.00	0.0	9	0;0	9	n	0.00	0.0	24	0;0	24	n	0.04	0.5	12	0;1	12	n	0.00	0.0	31	0;0	31	n	ENSMUSG00000021366.9	Hivep1	chr13	protein_coding	human immunodeficiency virus type I enhancer binding protein 1
known_NIR_4645	chr13	4241309;4242434	4242294;4244033	+	4241309	4244033	cassetteExon	ENSMUST00000021634.4	known	0.23	54.5	185	59;50	185	y	0.25	40.0	118	34;46	118	y	0.23	27.5	94	29;26	94	y	0.22	66.5	240	64;69	240	y	0.23	58.5	196	54;63	196	y	0.17	15.0	73	16;14	73	y	0.27	70.0	185	58;82	185	y	0.18	16.5	76	14;19	76	y	0.25	61.0	180	58;64	180	y	0.23	108.0	363	96;120	363	y	0.28	81.0	209	85;77	209	y	0.25	102.0	306	105;99	306	y	ENSMUSG00000021213.13	Akr1c13	chr13	protein_coding	aldo-keto reductase family 1, member C13
known_NIR_4646	chr13	4295386	4296802	+	4293091	4296802	A5SS	ENSMUST00000118663.9	known	0.00	0	247	0	247	n	0.00	0	201	0	201	n	0.00	0	41	0	41	n	0.00	0	334	0	334	n	0.00	0	212	0	212	n	0.00	0	12	0	12	n	0.02	5	316	5	316	y	0.00	0	26	0	26	n	0.00	0	361	0	361	n	0.00	0	581	0	581	n	0.00	0	479	0	479	n	0.00	0	603	0	603	n	ENSMUSG00000071551.14	Akr1c19	chr13	protein_coding	aldo-keto reductase family 1, member C19
known_NIR_4647	chr13	43305456	43306660	-	43305456	43306546	A5SS	ENSMUST00000179852.9	known	0.00	0	37	0	37	n	0.00	0	36	0	36	n	0.06	1	17	1	17	n	0.00	0	31	0	31	n	0.00	0	41	0	41	n	0.09	2	21	2	21	y	0.07	2	25	2	25	y	0.00	0	18	0	18	n	0.00	0	28	0	28	n	0.11	4	32	4	32	y	0.03	1	36	1	36	n	0.03	1	29	1	29	n	ENSMUSG00000021368.16	Tbc1d7	chr13	protein_coding	TBC1 domain family, member 7
known_NIR_4648	chr13	43322330;43322726	43322594;43323278	-	43322330	43323278	cassetteExon	ENSMUST00000179852.9	known	0.05	1.0	21	0;2	21	n	0.13	3.5	24	2;5	24	y	0.00	0.0	29	0;0	29	n	0.07	2.5	33	2;3	33	y	0.10	3.0	27	4;2	27	y	0.00	0.0	17	0;0	17	n	0.07	2.0	25	3;1	25	n	0.04	1.0	26	0;2	26	n	0.09	1.5	16	1;2	16	n	0.10	3.5	30	4;3	30	y	0.03	1.0	32	1;1	32	n	0.06	1.5	25	2;1	25	n	ENSMUSG00000021368.16	Tbc1d7	chr13	protein_coding	TBC1 domain family, member 7
known_NIR_4649	chr13	43323423	43324805	-	43323423	43324785	A5SS	ENSMUST00000179852.9	known	0.10	3	26	3	26	y	0.24	6	19	6	19	y	0.25	6	18	6	18	y	0.15	6	34	6	34	y	0.16	4	21	4	21	y	0.13	3	20	3	20	y	0.21	7	26	7	26	y	0.11	3	24	3	24	y	0.31	8	18	8	18	y	0.09	3	32	3	32	y	0.06	2	31	2	31	y	0.17	4	20	4	20	y	ENSMUSG00000021368.16	Tbc1d7	chr13	protein_coding	TBC1 domain family, member 7
known_NIR_4650	chr13	43519216	43524195	+	43519020	43524195	A5SS	ENSMUST00000222489.2	known	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.23	6	20	6	20	y	0.17	4	19	4	19	y	0.00	0	12	0	12	n	0.06	1	16	1	16	n	0.05	1	18	1	18	n	0.19	3	13	3	13	y	0.00	0	22	0	22	n	0.12	2	15	2	15	y	0.06	1	17	1	17	n	ENSMUSG00000054021.7	Sirt5	chr13	protein_coding	sirtuin 5
known_NIR_4651	chr13	43519456	43524195	+	43519020	43524195	A5SS	ENSMUST00000222489.2	known	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	20	0	20	n	0.00	0	19	0	19	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.10	2	18	2	18	y	0.00	0	13	0	13	n	0.00	0	22	0	22	n	0.00	0	15	0	15	n	0.00	0	17	0	17	n	ENSMUSG00000054021.7	Sirt5	chr13	protein_coding	sirtuin 5
known_NIR_4652	chr13	43539089	43539210	+	43539089	43548213	A3SS	ENSMUST00000223194.2	known	0.03	1	33	1	33	n	0.15	8	47	8	47	y	0.04	1	22	1	22	n	0.00	0	32	0	32	n	0.06	3	49	3	49	y	0.10	2	18	2	18	y	0.12	6	45	6	45	y	0.05	1	21	1	21	n	0.09	3	29	3	29	y	0.08	5	54	5	54	y	0.06	3	44	3	44	y	0.03	1	31	1	31	n	ENSMUSG00000054021.7	Sirt5	chr13	protein_coding	sirtuin 5
known_NIR_4653	chr13	4484473	4484727	+	4484473	4486279	A3SS	ENSMUST00000021630.15	known	0.00	3	1938	3	1938	y	0.00	3	1299	3	1299	y	0.00	0	53	0	53	n	0.00	2	1991	2	1991	y	0.00	5	2036	5	2036	y	0.00	0	70	0	70	n	0.00	6	2081	6	2081	y	0.00	0	302	0	302	n	0.00	5	2487	5	2487	y	0.00	4	3302	4	3302	y	0.00	7	2241	7	2241	y	0.00	7	2628	7	2628	y	ENSMUSG00000021210.17	Akr1c6	chr13	protein_coding	aldo-keto reductase family 1, member C6
known_NIR_4654	chr13	4486446	4497032	+	4486446	4488489	A3SS&ES	ENSMUST00000021630.15	known	0.01	26	2256	26	2256	y	0.00	0	1628	0	1628	n	0.00	0	53	0	53	n	0.01	21	2288	21	2288	y	0.00	0	2473	0	2473	n	0.00	0	78	0	78	n	0.01	36	2592	36	2592	y	0.00	0	306	0	306	n	0.01	38	2783	38	2783	y	0.02	65	3839	65	3839	y	0.02	45	2832	45	2832	y	0.01	34	2986	34	2986	y	ENSMUSG00000021210.17	Akr1c6	chr13	protein_coding	aldo-keto reductase family 1, member C6
known_NIR_4655	chr13	44976991	45027759	+	44976991	45001756	3pMXE	ENSMUST00000174068.8	known	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.10	1	9	1	9	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.08	1	11	1	11	n	0.29	4	10	4	10	y	0.00	0	5	0	5	n	0.50	1	1	1	1	n	ENSMUSG00000038518.16	Jarid2	chr13	protein_coding	jumonji, AT rich interactive domain 2
known_NIR_4656	chr13	44976991	45027759	+	44976991;45001897	45001756;45027759	ES	ENSMUST00000173704.8	known	0.00	0	11.5	0	12;11	n	0.00	0	4.0	0	5;3	n	0.07	1	12.5	1	9;16	n	0.00	0	6.5	0	5;8	n	0.00	0	12.0	0	11;13	n	0.00	0	4.0	0	3;5	n	0.00	0	10.0	0	9;11	n	0.00	0	10.0	0	13;7	n	0.11	1	8.5	1	11;6	n	0.27	4	11.0	4	10;12	y	0.00	0	5.5	0	5;6	n	0.25	1	3.0	1	1;5	n	ENSMUSG00000038518.16	Jarid2	chr13	protein_coding	jumonji, AT rich interactive domain 2
known_NIR_4657	chr13	44994356	45001756	+	44976991	45001756	A5SS	ENSMUST00000174068.8	known	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.18	2	9	2	9	y	0.17	1	5	1	5	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.67	2	1	2	1	n	ENSMUSG00000038518.16	Jarid2	chr13	protein_coding	jumonji, AT rich interactive domain 2
known_NIR_4658	chr13	4504545	4507693	+	4504545	4507148	3pMXE	ENSMUST00000021630.15	known	0.00	0	3611	0	3611	n	0.00	0	3169	0	3169	n	0.00	0	91	0	91	n	0.00	3	3001	3	3001	y	0.00	0	3205	0	3205	n	0.00	0	106	0	106	n	0.00	0	4281	0	4281	n	0.01	3	383	3	383	y	0.00	5	4100	5	4100	y	0.00	0	5680	0	5680	n	0.00	2	4519	2	4519	y	0.00	6	4234	6	4234	y	ENSMUSG00000021210.17	Akr1c6	chr13	protein_coding	aldo-keto reductase family 1, member C6
known_NIR_4659	chr13	45105859	45106648	-	45084627	45106648	A3SS	ENSMUST00000222583.2	known	0.00	0	123	0	123	n	0.01	1	146	1	146	n	0.02	3	165	3	165	y	0.00	0	160	0	160	n	0.01	1	182	1	182	n	0.00	0	93	0	93	n	0.00	1	210	1	210	n	0.00	0	107	0	107	n	0.01	1	137	1	137	n	0.00	0	207	0	207	n	0.01	1	152	1	152	n	0.00	0	206	0	206	n	ENSMUSG00000057531.15	Dtnbp1	chr13	protein_coding	dystrobrevin binding protein 1
known_NIR_4660	chr13	45147214	45149307	-	45147214	45155393	A5SS	ENSMUST00000072329.15	known	0.00	0	97	0	97	n	0.00	0	75	0	75	n	0.01	1	112	1	112	n	0.01	1	86	1	86	n	0.00	0	100	0	100	n	0.04	2	47	2	47	y	0.01	1	93	1	93	n	0.00	0	47	0	47	n	0.03	2	68	2	68	y	0.01	1	108	1	108	n	0.02	2	80	2	80	y	0.02	2	123	2	123	y	ENSMUSG00000057531.15	Dtnbp1	chr13	protein_coding	dystrobrevin binding protein 1
known_NIR_4661	chr13	45147214	45155393	-	45147214	45154857	5pMXE	ENSMUST00000222990.2	known	0.99	97	1	97	1	n	1.00	75	0	75	0	n	0.99	112	1	112	1	n	1.00	86	0	86	0	n	1.00	100	0	100	0	n	1.00	47	0	47	0	n	0.98	93	2	93	2	y	0.98	47	1	47	1	n	0.99	68	1	68	1	n	0.95	108	6	108	6	y	1.00	80	0	80	0	n	0.98	123	2	123	2	y	ENSMUSG00000057531.15	Dtnbp1	chr13	protein_coding	dystrobrevin binding protein 1
known_NIR_4662	chr13	4561282	4562666	-	4561282	4562585	A5SS	ENSMUST00000080361.13	known	0.29	86	212	86	212	y	0.30	47	112	47	112	y	0.24	8	26	8	26	y	0.30	83	193	83	193	y	0.31	104	227	104	227	y	0.29	10	25	10	25	y	0.35	136	252	136	252	y	0.25	27	83	27	83	y	0.34	101	192	101	192	y	0.28	95	244	95	244	y	0.34	101	196	101	196	y	0.31	75	166	75	166	y	ENSMUSG00000054757.15	Akr1c20	chr13	protein_coding	aldo-keto reductase family 1, member C20
known_NIR_4663	chr13	46005932	46118291	-	46005932;46110051	46109931;46118291	ES	ENSMUST00000091628.11	known	0.67	2	1.0	2	2;0	n	0.00	0	1.5	0	1;2	n	0.00	0	5.0	0	5;5	n	0.00	0	3.5	0	5;2	n	0.00	0	5.0	0	5;5	n	0.00	0	3.0	0	2;4	n	0.00	0	6.5	0	5;8	n	0.00	0	4.5	0	5;4	n	0.00	0	2.5	0	1;4	n	0.00	0	3.0	0	6;0	n	0.31	2	4.5	2	3;6	y	0.40	2	3.0	2	3;3	n	ENSMUSG00000046876.17	Atxn1	chr13	protein_coding	ataxin 1
known_NIR_4664	chr13	4651352	4652680	-	4651294	4652680	A3SS	ENSMUST00000091848.7	known	0.00	0	152	0	152	n	0.00	0	132	0	132	n	0.05	3	63	3	63	y	0.01	2	145	2	145	y	0.00	0	177	0	177	n	0.00	0	52	0	52	n	0.04	6	143	6	143	y	0.02	2	79	2	79	y	0.01	1	134	1	134	n	0.03	5	181	5	181	y	0.04	5	120	5	120	y	0.00	0	141	0	141	n	ENSMUSG00000045410.19	Akr1e1	chr13	protein_coding	aldo-keto reductase family 1, member E1
known_NIR_4665	chr13	4657202	4657390	-	4652796	4657390	A3SS	ENSMUST00000091848.7	known	0.00	0	122	0	122	n	0.00	0	97	0	97	n	0.00	0	64	0	64	n	0.00	0	124	0	124	n	0.00	0	149	0	149	n	0.00	0	57	0	57	n	0.01	2	137	2	137	y	0.00	0	61	0	61	n	0.02	2	112	2	112	y	0.01	1	162	1	162	n	0.01	1	116	1	116	n	0.01	1	124	1	124	n	ENSMUSG00000045410.19	Akr1e1	chr13	protein_coding	aldo-keto reductase family 1, member E1
known_NIR_4666	chr13	46840974	46846988	-	46840974;46842726	46842535;46846988	ES	ENSMUST00000021803.10	known	0.00	0	25.5	0	35;16	n	0.00	0	13.0	0	19;7	n	0.06	2	30.5	2	34;27	y	0.00	0	28.5	0	31;26	n	0.00	0	39.0	0	44;34	n	0.00	0	18.5	0	26;11	n	0.00	0	33.0	0	34;32	n	0.00	0	16.0	0	10;22	n	0.00	0	21.5	0	27;16	n	0.00	0	22.0	0	17;27	n	0.00	0	25.5	0	17;34	n	0.08	2	24.5	2	25;24	y	ENSMUSG00000021374.11	Nup153	chr13	protein_coding	nucleoporin 153
known_NIR_4667	chr13	46904102;46904249	46904178;46905557	-	46904102	46905557	cassetteExon	ENSMUST00000056978.8	known	0.11	2.0	16	0;4	16	n	0.19	3.0	13	1;5	13	n	0.04	1.0	22	2;0	22	n	0.11	3.0	25	3;3	25	y	0.07	2.0	28	2;2	28	y	0.10	2.0	19	1;3	19	n	0.07	2.0	26	3;1	26	n	0.05	0.5	10	1;0	10	n	0.00	0.0	9	0;0	9	n	0.11	4.0	31	3;5	31	y	0.03	0.5	18	0;1	18	n	0.04	0.5	13	0;1	13	n	ENSMUSG00000021375.12	Kif13a	chr13	protein_coding	kinesin family member 13A
known_NIR_4668	chr13	46906348;46914243	46914139;46914749	-	46906348	46914749	cassetteExon	ENSMUST00000056978.8	known	0.79	11.0	3	12;10	3	y	0.49	8.5	9	7;10	9	y	0.73	11.0	4	15;7	4	y	0.68	15.0	7	13;17	7	y	0.50	14.0	14	19;9	14	y	0.91	10.5	1	11;10	1	n	0.70	7.0	3	9;5	3	y	0.56	10.0	8	13;7	8	y	0.70	9.5	4	10;9	4	y	0.67	12.0	6	9;15	6	y	0.88	7.5	1	6;9	1	n	0.66	11.5	6	11;12	6	y	ENSMUSG00000021375.12	Kif13a	chr13	protein_coding	kinesin family member 13A
known_NIR_4669	chr13	46932469;46934140	46934102;46938722	-	46932469	46938722	cassetteExon	ENSMUST00000056978.8	known	0.86	12.5	2	12;13	2	y	0.86	6.0	1	9;3	1	n	0.79	11.0	3	12;10	3	y	0.83	15.0	3	13;17	3	y	0.89	15.5	2	13;18	2	y	1.00	5.5	0	8;3	0	n	1.00	15.5	0	15;16	0	n	0.92	11.5	1	13;10	1	n	1.00	6.5	0	6;7	0	n	1.00	18.5	0	17;20	0	n	1.00	11.0	0	12;10	0	n	1.00	10.0	0	12;8	0	n	ENSMUSG00000021375.12	Kif13a	chr13	protein_coding	kinesin family member 13A
known_NIR_4670	chr13	46956205;46961752	46961633;46962367	-	46956205	46962367	cassetteExon	ENSMUST00000056978.8	known	0.00	0.0	19	0;0	19	n	0.00	0.0	7	0;0	7	n	0.00	0.0	17	0;0	17	n	0.00	0.0	16	0;0	16	n	0.00	0.0	12	0;0	12	n	0.00	0.0	6	0;0	6	n	0.18	4.0	18	5;3	18	y	0.00	0.0	9	0;0	9	n	0.00	0.0	5	0;0	5	n	0.00	0.0	18	0;0	18	n	0.00	0.0	7	0;0	7	n	0.00	0.0	8	0;0	8	n	ENSMUSG00000021375.12	Kif13a	chr13	protein_coding	kinesin family member 13A
known_NIR_4671	chr13	47178848	47180728	-	47176199	47180728	A3SS	ENSMUST00000224970.2	known	0.60	6	4	6	4	y	0.56	9	7	9	7	y	0.56	10	8	10	8	y	0.56	9	7	9	7	y	0.48	12	13	12	13	y	0.62	5	3	5	3	n	0.39	7	11	7	11	y	0.22	2	7	2	7	n	0.42	8	11	8	11	y	0.28	9	23	9	23	y	0.78	18	5	18	5	y	0.71	12	5	12	5	y	ENSMUSG00000021376.12	Tpmt	chr13	protein_coding	thiopurine methyltransferase
known_NIR_4672	chr13	47178848	47180728	-	47178953	47180728	A3SS	ENSMUST00000021806.11	known	0.03	6	208	6	208	y	0.06	9	151	9	151	y	0.05	10	173	10	173	y	0.04	9	238	9	238	y	0.04	12	261	12	261	y	0.04	5	135	5	135	y	0.03	7	272	7	272	y	0.01	2	150	2	150	y	0.05	8	167	8	167	y	0.04	9	234	9	234	y	0.09	18	185	18	185	y	0.06	12	193	12	193	y	ENSMUSG00000021376.12	Tpmt	chr13	protein_coding	thiopurine methyltransferase
known_NIR_4673	chr13	47178953	47180728	-	47176199	47180728	A3SS	ENSMUST00000224970.2	known	0.98	208	4	208	4	y	0.96	151	7	151	7	y	0.96	173	8	173	8	y	0.97	238	7	238	7	y	0.95	261	13	261	13	y	0.98	135	3	135	3	y	0.96	272	11	272	11	y	0.96	150	7	150	7	y	0.94	167	11	167	11	y	0.91	234	23	234	23	y	0.97	185	5	185	5	y	0.97	193	5	193	5	y	ENSMUSG00000021376.12	Tpmt	chr13	protein_coding	thiopurine methyltransferase
known_NIR_4674	chr13	47180772	47185894	-	47180772	47182358	5pMXE	ENSMUST00000224970.2	known	0.00	0	178	0	178	n	0.00	0	128	0	128	n	0.00	0	186	0	186	n	0.00	0	215	0	215	n	0.00	0	243	0	243	n	0.00	0	128	0	128	n	0.00	1	266	1	266	n	0.00	0	151	0	151	n	0.01	1	178	1	178	n	0.00	0	230	0	230	n	0.01	2	183	2	183	y	0.01	1	191	1	191	n	ENSMUSG00000021376.12	Tpmt	chr13	protein_coding	thiopurine methyltransferase
known_NIR_4675	chr13	47180772	47185894	-	47180772;47182443	47182358;47185894	ES	ENSMUST00000021806.11	known	0.00	0	175.0	0	178;172	n	0.00	0	138.5	0	128;149	n	0.00	0	175.5	0	186;165	n	0.00	0	202.5	0	215;190	n	0.00	0	248.0	0	243;253	n	0.00	0	139.5	0	128;151	n	0.00	1	268.5	1	266;271	n	0.00	0	139.0	0	151;127	n	0.01	1	164.0	1	178;150	n	0.00	0	214.5	0	230;199	n	0.01	2	176.0	2	183;169	y	0.01	1	187.5	1	191;184	n	ENSMUSG00000021376.12	Tpmt	chr13	protein_coding	thiopurine methyltransferase
known_NIR_4676	chr13	47180772	47185894	-	47182443	47185894	3pMXE	ENSMUST00000136864.8	known	0.00	0	172	0	172	n	0.00	0	149	0	149	n	0.00	0	165	0	165	n	0.00	0	190	0	190	n	0.00	0	253	0	253	n	0.00	0	151	0	151	n	0.00	1	271	1	271	n	0.00	0	127	0	127	n	0.01	1	150	1	150	n	0.00	0	199	0	199	n	0.01	2	169	2	169	y	0.01	1	184	1	184	n	ENSMUSG00000021376.12	Tpmt	chr13	protein_coding	thiopurine methyltransferase
known_NIR_4677	chr13	47195055	47196603	-	47195055	47196580	A5SS	ENSMUST00000021806.11	known	0.26	18	50	18	50	y	0.37	10	17	10	17	y	0.27	18	48	18	48	y	0.32	31	65	31	65	y	0.33	29	60	29	60	y	0.38	13	21	13	21	y	0.28	23	58	23	58	y	0.36	26	47	26	47	y	0.33	17	34	17	34	y	0.31	26	58	26	58	y	0.36	17	30	17	30	y	0.29	17	41	17	41	y	ENSMUSG00000021376.12	Tpmt	chr13	protein_coding	thiopurine methyltransferase
known_NIR_4678	chr13	47195071	47196580	-	47195055	47196580	A3SS	ENSMUST00000021806.11	known	0.12	7	50	7	50	y	0.37	10	17	10	17	y	0.20	12	48	12	48	y	0.24	20	65	20	65	y	0.24	19	60	19	60	y	0.30	9	21	9	21	y	0.22	16	58	16	58	y	0.24	15	47	15	47	y	0.23	10	34	10	34	y	0.17	12	58	12	58	y	0.23	9	30	9	30	y	0.16	8	41	8	41	y	ENSMUSG00000021376.12	Tpmt	chr13	protein_coding	thiopurine methyltransferase
known_NIR_4679	chr13	47221058	47225368	+	47221058;47222111	47221940;47225368	ES	ENSMUST00000037025.16	known	0.00	0	32.5	0	33;32	n	0.00	0	30.0	0	29;31	n	0.00	0	26.5	0	24;29	n	0.00	0	43.5	0	43;44	n	0.06	3	49.5	3	41;58	y	0.05	1	18.0	1	19;17	n	0.00	0	35.0	0	37;33	n	0.03	1	28.0	1	27;29	n	0.03	1	30.5	1	25;36	n	0.00	0	40.0	0	38;42	n	0.00	0	35.5	0	35;36	n	0.00	0	34.0	0	31;37	n	ENSMUSG00000038080.18	Kdm1b	chr13	protein_coding	lysine (K)-specific demethylase 1B
known_NIR_4680	chr13	47347596	47360836	+	47276349	47360836	A5SS	ENSMUST00000068891.12	known	0.88	22	3	22	3	y	1.00	15	0	15	0	n	1.00	35	0	35	0	n	0.93	38	3	38	3	y	0.95	60	3	60	3	y	0.95	37	2	37	2	y	1.00	49	0	49	0	n	0.98	54	1	54	1	n	0.88	23	3	23	3	y	1.00	24	0	24	0	n	0.82	18	4	18	4	y	1.00	39	0	39	0	n	ENSMUSG00000038068.16	Rnf144b	chr13	protein_coding	ring finger protein 144B
known_NIR_4681	chr13	49341113;49344734	49344561;49347212	+	49341113	49347212	cassetteExon	ENSMUST00000049022.15	known	0.01	5.5	566	4;7	566	y	0.01	6.5	539	0;13	539	n	0.01	5.0	487	4;6	487	y	0.01	4.5	575	4;5	575	y	0.01	7.5	839	8;7	839	y	0.01	4.5	331	3;6	331	y	0.01	6.0	659	6;6	659	y	0.00	1.5	379	2;1	379	n	0.00	2.0	430	0;4	430	n	0.01	5.5	677	3;8	677	y	0.00	2.0	542	1;3	542	n	0.01	4.0	564	4;4	564	y	ENSMUSG00000037966.16	Ninj1	chr13	protein_coding	ninjurin 1
known_NIR_4682	chr13	49341332	49347212	+	49341113	49347212	A5SS	ENSMUST00000049022.15	known	0.00	1	566	1	566	n	0.00	1	539	1	539	n	0.00	1	487	1	487	n	0.00	2	575	2	575	y	0.01	7	839	7	839	y	0.01	3	331	3	331	y	0.00	2	659	2	659	y	0.00	0	379	0	379	n	0.00	1	430	1	430	n	0.01	6	677	6	677	y	0.00	0	542	0	542	n	0.01	5	564	5	564	y	ENSMUSG00000037966.16	Ninj1	chr13	protein_coding	ninjurin 1
known_NIR_4683	chr13	49341332	49347212	+	49344734	49347212	A5SS&ES	ENSMUST00000120733.8	known	0.12	1	7	1	7	n	0.07	1	13	1	13	n	0.14	1	6	1	6	n	0.29	2	5	2	5	n	0.50	7	7	7	7	y	0.33	3	6	3	6	n	0.25	2	6	2	6	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.43	6	8	6	8	y	0.00	0	3	0	3	n	0.56	5	4	5	4	n	ENSMUSG00000037966.16	Ninj1	chr13	protein_coding	ninjurin 1
known_NIR_4684	chr13	49343835	49347212	+	49341113	49347212	A5SS	ENSMUST00000049022.15	known	0.00	2	566	2	566	y	0.01	4	539	4	539	y	0.01	6	487	6	487	y	0.01	3	575	3	575	y	0.00	1	839	1	839	n	0.01	2	331	2	331	y	0.01	4	659	4	659	y	0.01	3	379	3	379	y	0.00	0	430	0	430	n	0.00	3	677	3	677	y	0.00	1	542	1	542	n	0.00	1	564	1	564	n	ENSMUSG00000037966.16	Ninj1	chr13	protein_coding	ninjurin 1
known_NIR_4685	chr13	49343835	49347212	+	49344734	49347212	A5SS&ES	ENSMUST00000120733.8	known	0.22	2	7	2	7	n	0.24	4	13	4	13	y	0.50	6	6	6	6	y	0.38	3	5	3	5	n	0.12	1	7	1	7	n	0.25	2	6	2	6	n	0.40	4	6	4	6	y	0.75	3	1	3	1	n	0.00	0	4	0	4	n	0.27	3	8	3	8	y	0.25	1	3	1	3	n	0.20	1	4	1	4	n	ENSMUSG00000037966.16	Ninj1	chr13	protein_coding	ninjurin 1
known_NIR_4686	chr13	49347440	49348315	+	49347440	49348370	A3SS	ENSMUST00000049022.15	known	0.01	11	738	11	738	y	0.02	17	714	17	714	y	0.00	2	672	2	672	y	0.01	9	703	9	703	y	0.01	14	965	14	965	y	0.00	0	437	0	437	n	0.01	10	924	10	924	y	0.01	5	443	5	443	y	0.02	9	589	9	589	y	0.01	13	885	13	885	y	0.01	7	730	7	730	y	0.01	11	737	11	737	y	ENSMUSG00000037966.16	Ninj1	chr13	protein_coding	ninjurin 1
known_NIR_4687	chr13	49361622	49369230	-	49361622	49363565	A5SS&ES	ENSMUST00000222733.2	known	0.61	11	7	11	7	y	0.60	12	8	12	8	y	0.77	10	3	10	3	y	0.74	14	5	14	5	y	0.67	14	7	14	7	y	1.00	8	0	8	0	n	0.80	20	5	20	5	y	0.73	8	3	8	3	y	0.93	14	1	14	1	n	0.88	21	3	21	3	y	0.68	15	7	15	7	y	0.76	16	5	16	5	y	ENSMUSG00000037960.12	Card19	chr13	protein_coding	caspase recruitment domain family, member 19
known_NIR_4688	chr13	49361622	49369230	-	49361622	49369413	A5SS	ENSMUST00000048946.7	known	0.37	11	19	11	19	y	0.52	12	11	12	11	y	0.31	10	22	10	22	y	0.45	14	17	14	17	y	0.42	14	19	14	19	y	0.36	8	14	8	14	y	0.49	20	21	20	21	y	0.30	8	19	8	19	y	0.56	14	11	14	11	y	0.58	21	15	21	15	y	0.62	15	9	15	9	y	0.52	16	15	16	15	y	ENSMUSG00000037960.12	Card19	chr13	protein_coding	caspase recruitment domain family, member 19
known_NIR_4689	chr13	49361622	49369230	-	49361622;49363679	49363565;49369230	ES	ENSMUST00000221443.2	known	0.73	11	4.0	11	7;1	n	0.73	12	4.5	12	8;1	n	0.87	10	1.5	10	3;0	n	0.80	14	3.5	14	5;2	y	0.76	14	4.5	14	7;2	y	1.00	8	0.0	8	0;0	n	0.83	20	4.0	20	5;3	y	0.84	8	1.5	8	3;0	n	0.93	14	1.0	14	1;1	n	0.89	21	2.5	21	3;2	y	0.79	15	4.0	15	7;1	n	0.78	16	4.5	16	5;4	y	ENSMUSG00000037960.12	Card19	chr13	protein_coding	caspase recruitment domain family, member 19
known_NIR_4690	chr13	49361622;49363679	49363565;49369413	-	49361622	49369413	cassetteExon	ENSMUST00000048946.7	known	0.21	5.0	19	7;3	19	y	0.27	4.0	11	8;0	11	n	0.14	3.5	22	3;4	22	y	0.13	2.5	17	5;0	17	n	0.17	4.0	19	7;1	19	n	0.00	0.0	14	0;0	14	n	0.19	5.0	21	5;5	21	y	0.07	1.5	19	3;0	19	n	0.04	0.5	11	1;0	11	n	0.12	2.0	15	3;1	15	n	0.28	3.5	9	7;0	9	n	0.14	2.5	15	5;0	15	n	ENSMUSG00000037960.12	Card19	chr13	protein_coding	caspase recruitment domain family, member 19
known_NIR_4691	chr13	49806607	49807823	+	49807158	49807823	A5SS	ENSMUST00000222197.2	known	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.14	2	12	2	12	y	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	ENSMUSG00000021392.9	Nol8	chr13	protein_coding	nucleolar protein 8
known_NIR_4692	chr13	49807158	49807827	+	49807158	49807823	A3SS	ENSMUST00000222197.2	known	0.00	0	8	0	8	n	0.40	2	3	2	3	n	0.00	0	12	0	12	n	0.20	2	8	2	8	y	0.08	1	12	1	12	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.11	1	8	1	8	n	0.00	0	6	0	6	n	0.06	1	15	1	15	n	0.27	3	8	3	8	y	0.00	0	13	0	13	n	ENSMUSG00000021392.9	Nol8	chr13	protein_coding	nucleolar protein 8
known_NIR_4693	chr13	49807339	49807823	+	49807158	49807823	A5SS	ENSMUST00000222197.2	known	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.18	2	9	2	9	y	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.06	1	15	1	15	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	ENSMUSG00000021392.9	Nol8	chr13	protein_coding	nucleolar protein 8
known_NIR_4694	chr13	49835784	49840862	+	49835679	49840862	A5SS	ENSMUST00000165316.8	known	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.19	4	17	4	17	y	0.00	0	28	0	28	n	0.05	1	21	1	21	n	0.14	2	12	2	12	y	0.06	1	16	1	16	n	0.15	2	11	2	11	y	0.00	0	8	0	8	n	0.00	0	21	0	21	n	0.12	2	14	2	14	y	0.05	1	21	1	21	n	ENSMUSG00000037851.14	Iars	chr13	protein_coding	isoleucine-tRNA synthetase
known_NIR_4695	chr13	51806791	51808532	+	51806791	51808422	A3SS	ENSMUST00000040117.15	known	0.00	0	8	0	8	n	0.18	2	9	2	9	y	0.04	1	26	1	26	n	0.00	0	28	0	28	n	0.06	2	33	2	33	y	0.00	0	15	0	15	n	0.05	1	21	1	21	n	0.12	2	14	2	14	y	0.00	0	9	0	9	n	0.00	0	19	0	19	n	0.08	2	23	2	23	y	0.05	1	20	1	20	n	ENSMUSG00000035139.15	Secisbp2	chr13	protein_coding	SECIS binding protein 2
known_NIR_4696	chr13	53051168	53052686	-	53043231	53052686	A3SS	ENSMUST00000137064.8	known	0.00	0	111	0	111	n	0.01	1	112	1	112	n	0.00	0	79	0	79	n	0.01	1	155	1	155	n	0.02	3	147	3	147	y	0.00	0	56	0	56	n	0.01	2	157	2	157	y	0.00	0	66	0	66	n	0.01	1	111	1	111	n	0.01	2	201	2	201	y	0.00	0	144	0	144	n	0.01	2	165	2	165	y	ENSMUSG00000021460.18	Auh	chr13	protein_coding	AU RNA binding protein/enoyl-coenzyme A hydratase
known_NIR_4697	chr13	53063351	53073037	-	53052772	53073037	A3SS	ENSMUST00000137064.8	known	0.01	2	136	2	136	y	0.03	4	124	4	124	y	0.01	1	101	1	101	n	0.02	3	188	3	188	y	0.03	5	138	5	138	y	0.06	3	51	3	51	y	0.03	5	189	5	189	y	0.00	0	70	0	70	n	0.04	6	142	6	142	y	0.03	7	230	7	230	y	0.06	7	115	7	115	y	0.03	6	189	6	189	y	ENSMUSG00000021460.18	Auh	chr13	protein_coding	AU RNA binding protein/enoyl-coenzyme A hydratase
known_NIR_4698	chr13	53063393	53073037	-	53052772	53073037	A3SS	ENSMUST00000137064.8	known	0.00	0	136	0	136	n	0.02	3	124	3	124	y	0.00	0	101	0	101	n	0.00	0	188	0	188	n	0.01	2	138	2	138	y	0.02	1	51	1	51	n	0.02	3	189	3	189	y	0.00	0	70	0	70	n	0.02	3	142	3	142	y	0.02	4	230	4	230	y	0.02	2	115	2	115	y	0.00	0	189	0	189	n	ENSMUSG00000021460.18	Auh	chr13	protein_coding	AU RNA binding protein/enoyl-coenzyme A hydratase
known_NIR_4699	chr13	53063393	53073037	-	53063351	53073037	A3SS	ENSMUST00000119311.8	known	0.00	0	2	0	2	n	0.43	3	4	3	4	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.29	2	5	2	5	n	0.25	1	3	1	3	n	0.38	3	5	3	5	n	-	-	-	-	-	-	0.33	3	6	3	6	n	0.36	4	7	4	7	y	0.22	2	7	2	7	n	0.00	0	6	0	6	n	ENSMUSG00000021460.18	Auh	chr13	protein_coding	AU RNA binding protein/enoyl-coenzyme A hydratase
known_NIR_4700	chr13	53067097	53073037	-	53052772	53073037	A3SS	ENSMUST00000137064.8	known	0.20	33	136	33	136	y	0.15	22	124	22	124	y	0.22	28	101	28	101	y	0.14	31	188	31	188	y	0.21	36	138	36	138	y	0.28	20	51	20	51	y	0.14	31	189	31	189	y	0.17	14	70	14	70	y	0.13	22	142	22	142	y	0.11	28	230	28	230	y	0.23	34	115	34	115	y	0.16	36	189	36	189	y	ENSMUSG00000021460.18	Auh	chr13	protein_coding	AU RNA binding protein/enoyl-coenzyme A hydratase
known_NIR_4701	chr13	53067097	53073037	-	53063351	53073037	A3SS	ENSMUST00000119311.8	known	0.94	33	2	33	2	y	0.85	22	4	22	4	y	0.97	28	1	28	1	n	0.91	31	3	31	3	y	0.88	36	5	36	5	y	0.87	20	3	20	3	y	0.86	31	5	31	5	y	1.00	14	0	14	0	n	0.79	22	6	22	6	y	0.80	28	7	28	7	y	0.83	34	7	34	7	y	0.86	36	6	36	6	y	ENSMUSG00000021460.18	Auh	chr13	protein_coding	AU RNA binding protein/enoyl-coenzyme A hydratase
known_NIR_4702	chr13	53067097	53073037	-	53063393	53073037	A3SS	ENSMUST00000128544.8	known	1.00	33	0	33	0	n	0.88	22	3	22	3	y	1.00	28	0	28	0	n	1.00	31	0	31	0	n	0.95	36	2	36	2	y	0.95	20	1	20	1	n	0.91	31	3	31	3	y	1.00	14	0	14	0	n	0.88	22	3	22	3	y	0.88	28	4	28	4	y	0.94	34	2	34	2	y	1.00	36	0	36	0	n	ENSMUSG00000021460.18	Auh	chr13	protein_coding	AU RNA binding protein/enoyl-coenzyme A hydratase
known_NIR_4703	chr13	53073302	53083425	-	53073302	53083491	A5SS	ENSMUST00000021913.16	known	0.01	1	94	1	94	n	0.00	0	56	0	56	n	0.00	0	65	0	65	n	0.01	1	114	1	114	n	0.00	0	104	0	104	n	0.00	0	46	0	46	n	0.00	0	116	0	116	n	0.00	0	33	0	33	n	0.00	0	96	0	96	n	0.00	0	148	0	148	n	0.02	2	102	2	102	y	0.02	2	102	2	102	y	ENSMUSG00000021460.18	Auh	chr13	protein_coding	AU RNA binding protein/enoyl-coenzyme A hydratase
known_NIR_4704	chr13	54614268	54615639	-	54614197	54615639	A3SS	ENSMUST00000026990.6	known	0.08	4	46	4	46	y	0.00	0	60	0	60	n	0.03	3	101	3	101	y	0.00	0	72	0	72	n	0.07	6	76	6	76	y	0.00	0	49	0	49	n	0.04	3	66	3	66	y	0.00	0	55	0	55	n	0.06	3	49	3	49	y	0.05	4	84	4	84	y	0.08	6	67	6	67	y	0.01	1	77	1	77	n	ENSMUSG00000025872.6	Thoc3	chr13	protein_coding	THO complex 3
known_NIR_4705	chr13	54660285	54671783	+	54651817	54671783	A5SS	ENSMUST00000121401.8	known	0.87	13	2	13	2	y	0.43	3	4	3	4	n	0.38	3	5	3	5	n	0.71	5	2	5	2	n	0.69	9	4	9	4	y	0.44	4	5	4	5	n	0.50	2	2	2	2	n	0.50	4	4	4	4	n	0.50	2	2	2	2	n	0.62	5	3	5	3	n	0.00	0	3	0	3	n	0.70	7	3	7	3	y	ENSMUSG00000043183.19	Simc1	chr13	protein_coding	SUMO-interacting motifs containing 1
known_NIR_4706	chr13	54704464	54707011	-	54704464	54712995	A5SS	ENSMUST00000153708.2	known	0.96	120	5	120	5	y	0.96	108	5	108	5	y	0.97	161	5	161	5	y	0.96	150	6	150	6	y	0.98	188	4	188	4	y	0.99	139	2	139	2	y	0.97	186	6	186	6	y	0.91	103	10	103	10	y	0.98	96	2	96	2	y	0.97	195	5	195	5	y	0.95	104	5	104	5	y	0.97	138	4	138	4	y	ENSMUSG00000025871.19	4833439L19Rik	chr13	protein_coding	RIKEN cDNA 4833439L19 gene
known_NIR_4707	chr13	54709684	54712328	-	54709684	54711998	A5SS&ES	ENSMUST00000143144.8	known	0.15	12	66	12	66	y	0.12	9	65	9	65	y	0.08	10	109	10	109	y	0.02	2	94	2	94	y	0.07	9	123	9	123	y	0.14	13	79	13	79	y	0.03	3	94	3	94	y	0.06	5	77	5	77	y	0.04	3	72	3	72	y	0.10	10	94	10	94	y	0.15	12	69	12	69	y	0.12	10	76	10	76	y	ENSMUSG00000025871.19	4833439L19Rik	chr13	protein_coding	RIKEN cDNA 4833439L19 gene
known_NIR_4708	chr13	54709684	54712328	-	54709684;54712085	54711998;54712328	ES	ENSMUST00000026989.15	known	0.15	12	69.0	12	66;72	y	0.12	9	66.0	9	65;67	y	0.09	10	105.0	10	109;101	y	0.02	2	94.5	2	94;95	y	0.07	9	129.0	9	123;135	y	0.15	13	72.0	13	79;65	y	0.03	3	111.0	3	94;128	y	0.06	5	80.0	5	77;83	y	0.05	3	63.5	3	72;55	y	0.09	10	107.5	10	94;121	y	0.15	12	68.5	12	69;68	y	0.11	10	81.5	10	76;87	y	ENSMUSG00000025871.19	4833439L19Rik	chr13	protein_coding	RIKEN cDNA 4833439L19 gene
known_NIR_4709	chr13	54709684	54712995	-	54704464	54712995	A3SS	ENSMUST00000153708.2	known	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.57	8	6	8	6	y	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	ENSMUSG00000025871.19	4833439L19Rik	chr13	protein_coding	RIKEN cDNA 4833439L19 gene
known_NIR_4710	chr13	54709684	54712995	-	54709684;54712434	54712328;54712995	ES	ENSMUST00000153065.8	known	0.00	0	43.5	0	12;75	n	0.00	0	34.0	0	9;59	n	0.00	0	52.0	0	10;94	n	0.00	0	51.0	0	2;100	n	0.00	0	59.0	0	9;109	n	0.00	0	40.0	0	13;67	n	0.12	8	58.0	8	3;113	y	0.00	0	48.5	0	5;92	n	0.00	0	35.5	0	3;68	n	0.00	0	54.0	0	10;98	n	0.00	0	42.0	0	12;72	n	0.00	0	46.0	0	10;82	n	ENSMUSG00000025871.19	4833439L19Rik	chr13	protein_coding	RIKEN cDNA 4833439L19 gene
known_NIR_4711	chr13	54709684;54712434	54711998;54712995	-	54709684	54712995	cassetteExon	ENSMUST00000143173.8	known	1.00	70.5	0	66;75	0	n	1.00	62.0	0	65;59	0	n	1.00	101.5	0	109;94	0	n	1.00	97.0	0	94;100	0	n	1.00	116.0	0	123;109	0	n	1.00	73.0	0	79;67	0	n	0.93	103.5	8	94;113	8	y	1.00	84.5	0	77;92	0	n	1.00	70.0	0	72;68	0	n	1.00	96.0	0	94;98	0	n	1.00	70.5	0	69;72	0	n	1.00	79.0	0	76;82	0	n	ENSMUSG00000025871.19	4833439L19Rik	chr13	protein_coding	RIKEN cDNA 4833439L19 gene
known_NIR_4712	chr13	54712085	54712323	-	54712085	54712328	A5SS	ENSMUST00000026989.15	known	0.01	1	72	1	72	n	0.00	0	67	0	67	n	0.00	0	101	0	101	n	0.01	1	95	1	95	n	0.00	0	135	0	135	n	0.00	0	65	0	65	n	0.02	2	128	2	128	y	0.02	2	83	2	83	y	0.00	0	55	0	55	n	0.00	0	121	0	121	n	0.00	0	68	0	68	n	0.00	0	87	0	87	n	ENSMUSG00000025871.19	4833439L19Rik	chr13	protein_coding	RIKEN cDNA 4833439L19 gene
known_NIR_4713	chr13	54712434	54712995	-	54704464	54712995	A3SS	ENSMUST00000153708.2	known	0.94	75	5	75	5	y	0.92	59	5	59	5	y	0.95	94	5	94	5	y	0.94	100	6	100	6	y	0.96	109	4	109	4	y	0.97	67	2	67	2	y	0.95	113	6	113	6	y	0.90	92	10	92	10	y	0.97	68	2	68	2	y	0.95	98	5	98	5	y	0.94	72	5	72	5	y	0.95	82	4	82	4	y	ENSMUSG00000025871.19	4833439L19Rik	chr13	protein_coding	RIKEN cDNA 4833439L19 gene
known_NIR_4714	chr13	54726781	54726952	+	54726781	54728534	A3SS	ENSMUST00000026988.11	known	0.11	1	8	1	8	n	0.30	3	7	3	7	y	0.29	7	17	7	17	y	0.36	5	9	5	9	y	0.24	5	16	5	16	y	0.38	5	8	5	8	y	0.50	6	6	6	6	y	0.38	3	5	3	5	n	0.83	5	1	5	1	n	0.30	3	7	3	7	y	0.75	6	2	6	2	n	0.23	3	10	3	10	y	ENSMUSG00000025870.11	Arl10	chr13	protein_coding	ADP-ribosylation factor-like 10
known_NIR_4715	chr13	54741704	54746535	-	54741855	54746535	A3SS	ENSMUST00000091609.11	known	0.00	0	431	0	431	n	0.02	8	439	8	439	y	0.00	0	625	0	625	n	0.00	0	430	0	430	n	0.00	0	528	0	528	n	0.00	0	262	0	262	n	0.00	0	568	0	568	n	0.00	0	273	0	273	n	0.00	0	354	0	354	n	0.00	0	506	0	506	n	0.00	0	429	0	429	n	0.00	0	419	0	419	n	ENSMUSG00000047547.15	Cltb	chr13	protein_coding	clathrin, light polypeptide (Lcb)
known_NIR_4716	chr13	54741855;54744892	54744839;54746535	-	54741855	54746535	cassetteExon	ENSMUST00000091609.11	known	0.00	0.5	431	1;0	431	n	0.00	2.0	439	2;2	439	y	0.00	2.0	625	2;2	625	y	0.00	1.0	430	2;0	430	n	0.00	2.5	528	2;3	528	y	0.00	1.0	262	1;1	262	n	0.01	3.0	568	2;4	568	y	0.00	0.0	273	0;0	273	n	0.01	3.5	354	3;4	354	y	0.00	2.5	506	1;4	506	n	0.00	1.0	429	1;1	429	n	0.01	4.0	419	4;4	419	y	ENSMUSG00000047547.15	Cltb	chr13	protein_coding	clathrin, light polypeptide (Lcb)
known_NIR_4717	chr13	54744892	54746535	-	54741704	54746535	A3SS	ENSMUST00000140142.8	known	-	-	-	-	-	-	0.20	2	8	2	8	y	1.00	2	0	2	0	n	-	-	-	-	-	-	1.00	3	0	3	0	n	1.00	1	0	1	0	n	1.00	4	0	4	0	n	-	-	-	-	-	-	1.00	4	0	4	0	n	1.00	4	0	4	0	n	1.00	1	0	1	0	n	1.00	4	0	4	0	n	ENSMUSG00000047547.15	Cltb	chr13	protein_coding	clathrin, light polypeptide (Lcb)
known_NIR_4718	chr13	54769716;54777277	54777203;54786063	+	54769716	54786063	cassetteExon	ENSMUST00000126071.9	known	0.11	4.0	31	6;2	31	y	0.08	2.0	24	0;4	24	n	0.09	8.5	89	11;6	89	y	0.08	4.5	55	4;5	55	y	0.06	5.0	77	5;5	77	y	0.09	4.5	47	4;5	47	y	0.11	7.0	58	8;6	58	y	0.08	5.0	56	5;5	56	y	0.12	4.5	34	5;4	34	y	0.13	7.5	52	9;6	52	y	0.09	4.5	45	5;4	45	y	0.15	9.5	54	10;9	54	y	ENSMUSG00000025873.17	Faf2	chr13	protein_coding	Fas associated factor family member 2
known_NIR_4719	chr13	54789309	54793058	+	54789366	54793058	A5SS	ENSMUST00000126071.9	known	0.04	2	46	2	46	y	0.00	0	48	0	48	n	0.04	5	113	5	113	y	0.00	0	59	0	59	n	0.09	10	100	10	100	y	0.07	4	57	4	57	y	0.04	3	68	3	68	y	0.05	3	63	3	63	y	0.07	3	40	3	40	y	0.06	4	63	4	63	y	0.03	1	31	1	31	n	0.15	7	41	7	41	y	ENSMUSG00000025873.17	Faf2	chr13	protein_coding	Fas associated factor family member 2
known_NIR_4720	chr13	54793134	54797791	+	54793134	54796105	3pMXE	ENSMUST00000137413.8	known	0.00	0	56	0	56	n	0.00	0	46	0	46	n	0.00	0	101	0	101	n	0.00	0	67	0	67	n	0.04	4	95	4	95	y	0.04	2	48	2	48	y	0.00	0	68	0	68	n	0.03	2	59	2	59	y	0.02	1	45	1	45	n	0.00	0	51	0	51	n	0.00	0	46	0	46	n	0.01	1	66	1	66	n	ENSMUSG00000025873.17	Faf2	chr13	protein_coding	Fas associated factor family member 2
known_NIR_4721	chr13	54793134	54797791	+	54793134;54796243	54796105;54797791	ES	ENSMUST00000126071.9	known	0.00	0	51.0	0	56;46	n	0.00	0	47.5	0	46;49	n	0.00	0	107.0	0	101;113	n	0.00	0	64.5	0	67;62	n	0.04	4	108.0	4	95;121	y	0.03	2	57.0	2	48;66	y	0.00	0	80.5	0	68;93	n	0.03	2	64.5	2	59;70	y	0.02	1	55.0	1	45;65	n	0.00	0	67.0	0	51;83	n	0.00	0	58.5	0	46;71	n	0.01	1	68.5	1	66;71	n	ENSMUSG00000025873.17	Faf2	chr13	protein_coding	Fas associated factor family member 2
known_NIR_4722	chr13	54831032	54831408	-	54831029	54831408	A3SS	ENSMUST00000177950.8	known	0.46	12	14	12	14	y	0.43	10	13	10	13	y	0.41	33	47	33	47	y	0.56	39	31	39	31	y	0.48	30	32	30	32	y	0.23	10	34	10	34	y	0.43	16	21	16	21	y	0.27	8	22	8	22	y	0.52	14	13	14	13	y	0.46	31	36	31	36	y	0.32	13	28	13	28	y	0.51	24	23	24	23	y	ENSMUSG00000034928.17	Rnf44	chr13	protein_coding	ring finger protein 44
known_NIR_4723	chr13	54831888	54832151	-	54831899	54832151	A3SS	ENSMUST00000177950.8	known	0.14	4	25	4	25	y	0.00	0	13	0	13	n	0.12	6	46	6	46	y	0.12	4	29	4	29	y	0.10	5	43	5	43	y	0.00	0	33	0	33	n	0.07	3	37	3	37	y	0.00	0	26	0	26	n	0.07	2	26	2	26	y	0.12	5	36	5	36	y	0.12	3	23	3	23	y	0.09	4	41	4	41	y	ENSMUSG00000034928.17	Rnf44	chr13	protein_coding	ring finger protein 44
known_NIR_4724	chr13	54831888	54832151	-	54831902	54832151	A3SS	ENSMUST00000129881.8	known	1.00	4	0	4	0	n	0.00	0	2	0	2	n	0.55	6	5	6	5	y	0.80	4	1	4	1	n	0.62	5	3	5	3	n	0.00	0	1	0	1	n	0.60	3	2	3	2	n	0.00	0	1	0	1	n	0.40	2	3	2	3	n	0.62	5	3	5	3	n	0.27	3	8	3	8	y	0.33	4	8	4	8	y	ENSMUSG00000034928.17	Rnf44	chr13	protein_coding	ring finger protein 44
known_NIR_4725	chr13	54831888	54832151	-	54831963	54832151	A3SS	ENSMUST00000125871.8	known	0.27	4	11	4	11	y	0.00	0	8	0	8	n	0.40	6	9	6	9	y	0.21	4	15	4	15	y	0.21	5	19	5	19	y	0.00	0	18	0	18	n	0.21	3	11	3	11	y	0.00	0	11	0	11	n	0.25	2	6	2	6	n	0.23	5	17	5	17	y	0.23	3	10	3	10	y	0.24	4	13	4	13	y	ENSMUSG00000034928.17	Rnf44	chr13	protein_coding	ring finger protein 44
known_NIR_4726	chr13	54831902	54832151	-	54831899	54832151	A3SS	ENSMUST00000177950.8	known	0.00	0	25	0	25	n	0.13	2	13	2	13	y	0.10	5	46	5	46	y	0.03	1	29	1	29	n	0.07	3	43	3	43	y	0.03	1	33	1	33	n	0.05	2	37	2	37	y	0.04	1	26	1	26	n	0.10	3	26	3	26	y	0.08	3	36	3	36	y	0.26	8	23	8	23	y	0.16	8	41	8	41	y	ENSMUSG00000034928.17	Rnf44	chr13	protein_coding	ring finger protein 44
known_NIR_4727	chr13	54831902	54832151	-	54831963	54832151	A3SS	ENSMUST00000125871.8	known	0.00	0	11	0	11	n	0.20	2	8	2	8	y	0.36	5	9	5	9	y	0.06	1	15	1	15	n	0.14	3	19	3	19	y	0.05	1	18	1	18	n	0.15	2	11	2	11	y	0.08	1	11	1	11	n	0.33	3	6	3	6	n	0.15	3	17	3	17	y	0.44	8	10	8	10	y	0.38	8	13	8	13	y	ENSMUSG00000034928.17	Rnf44	chr13	protein_coding	ring finger protein 44
known_NIR_4728	chr13	54831963	54832151	-	54831899	54832151	A3SS	ENSMUST00000177950.8	known	0.31	11	25	11	25	y	0.38	8	13	8	13	y	0.16	9	46	9	46	y	0.34	15	29	15	29	y	0.31	19	43	19	43	y	0.35	18	33	18	33	y	0.23	11	37	11	37	y	0.30	11	26	11	26	y	0.19	6	26	6	26	y	0.32	17	36	17	36	y	0.30	10	23	10	23	y	0.24	13	41	13	41	y	ENSMUSG00000034928.17	Rnf44	chr13	protein_coding	ring finger protein 44
known_NIR_4729	chr13	54832301	54835844	-	54832301	54835307	5pMXE	ENSMUST00000177950.8	known	0.45	5	6	5	6	y	1.00	2	0	2	0	n	0.36	5	9	5	9	y	0.45	5	6	5	6	y	0.62	13	8	13	8	y	0.47	7	8	7	8	y	0.37	7	12	7	12	y	0.83	5	1	5	1	n	0.56	5	4	5	4	n	0.77	10	3	10	3	y	0.56	5	4	5	4	n	0.50	6	6	6	6	y	ENSMUSG00000034928.17	Rnf44	chr13	protein_coding	ring finger protein 44
known_NIR_4730	chr13	54832301	54835844	-	54832301	54841542	A5SS	ENSMUST00000037422.16	known	0.15	5	28	5	28	y	0.07	2	28	2	28	y	0.09	5	51	5	51	y	0.12	5	37	5	37	y	0.22	13	45	13	45	y	0.20	7	28	7	28	y	0.17	7	34	7	34	y	0.11	5	42	5	42	y	0.20	5	20	5	20	y	0.18	10	45	10	45	y	0.17	5	25	5	25	y	0.15	6	35	6	35	y	ENSMUSG00000034928.17	Rnf44	chr13	protein_coding	ring finger protein 44
known_NIR_4731	chr13	54832301	54841542	-	54832301	54835307	5pMXE	ENSMUST00000177950.8	known	0.82	28	6	28	6	y	1.00	28	0	28	0	n	0.85	51	9	51	9	y	0.86	37	6	37	6	y	0.85	45	8	45	8	y	0.78	28	8	28	8	y	0.74	34	12	34	12	y	0.98	42	1	42	1	n	0.83	20	4	20	4	y	0.94	45	3	45	3	y	0.86	25	4	25	4	y	0.85	35	6	35	6	y	ENSMUSG00000034928.17	Rnf44	chr13	protein_coding	ring finger protein 44
known_NIR_4732	chr13	54937494	54941008	+	54940699	54941008	5pMXE	ENSMUST00000130568.9	known	0.12	2	14	2	14	y	0.00	0	9	0	9	n	0.10	1	9	1	9	n	0.07	1	14	1	14	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	ENSMUSG00000025875.15	Tspan17	chr13	protein_coding	tetraspanin 17
known_NIR_4733	chr13	54937494;54940699	54940422;54941008	+	54937494	54941008	cassetteExon	ENSMUST00000163796.8	known	0.84	10.5	2	7;14	2	y	1.00	6.0	0	3;9	0	n	0.90	9.5	1	10;9	1	n	0.91	10.5	1	7;14	1	n	1.00	13.5	0	15;12	0	n	1.00	6.5	0	7;6	0	n	1.00	8.0	0	9;7	0	n	1.00	8.0	0	7;9	0	n	1.00	8.5	0	7;10	0	n	1.00	12.5	0	11;14	0	n	1.00	7.5	0	7;8	0	n	1.00	9.0	0	7;11	0	n	ENSMUSG00000025875.15	Tspan17	chr13	protein_coding	tetraspanin 17
known_NIR_4734	chr13	55208155	55223071	-	55208155	55217535	A5SS&ES	ENSMUST00000099496.4	known	0.02	1	45	1	45	n	0.00	0	39	0	39	n	0.03	2	63	2	63	y	0.00	0	39	0	39	n	0.00	0	71	0	71	n	0.00	0	32	0	32	n	0.00	0	63	0	63	n	0.00	0	32	0	32	n	0.00	0	52	0	52	n	0.00	0	77	0	77	n	0.02	1	50	1	50	n	0.00	0	54	0	54	n	ENSMUSG00000025878.17	Uimc1	chr13	protein_coding	ubiquitin interaction motif containing 1
known_NIR_4735	chr13	55208155	55223071	-	55208155;55217620	55217535;55223071	ES	ENSMUST00000026997.12	known	0.02	1	44.5	1	45;44	n	0.00	0	36.5	0	39;34	n	0.04	2	54.5	2	63;46	y	0.00	0	29.0	0	39;19	n	0.00	0	65.5	0	71;60	n	0.00	0	30.5	0	32;29	n	0.00	0	49.0	0	63;35	n	0.00	0	23.5	0	32;15	n	0.00	0	43.0	0	52;34	n	0.00	0	63.0	0	77;49	n	0.02	1	39.5	1	50;29	n	0.00	0	44.5	0	54;35	n	ENSMUSG00000025878.17	Uimc1	chr13	protein_coding	ubiquitin interaction motif containing 1
known_NIR_4736	chr13	55208155;55217620	55217535;55225216	-	55208155;55224220	55223071;55225216	MXE	ENSMUST00000148702.8	known	0.56	22.5	17.5	45;0	1;34	n	0.49	20.0	20.5	39;1	0;41	n	0.55	35.5	29.5	63;8	2;57	y	0.51	21.5	21.0	39;4	0;42	n	0.59	38.5	27.0	71;6	0;54	n	0.47	17.5	19.5	32;3	0;39	n	0.65	32.5	17.5	63;2	0;35	n	0.39	16.0	25.5	32;0	0;51	n	0.54	27.0	23.0	52;2	0;46	n	0.71	43.0	17.5	77;9	0;35	n	0.49	27.5	28.5	50;5	1;56	n	0.53	28.5	25.5	54;3	0;51	n	ENSMUSG00000025878.17	Uimc1	chr13	protein_coding	ubiquitin interaction motif containing 1
known_NIR_4737	chr13	55217620	55223071	-	55217620	55225216	A5SS	ENSMUST00000099496.4	known	1.00	44	0	44	0	n	0.97	34	1	34	1	n	0.85	46	8	46	8	y	0.83	19	4	19	4	y	0.91	60	6	60	6	y	0.91	29	3	29	3	y	0.95	35	2	35	2	y	1.00	15	0	15	0	n	0.94	34	2	34	2	y	0.84	49	9	49	9	y	0.85	29	5	29	5	y	0.92	35	3	35	3	y	ENSMUSG00000025878.17	Uimc1	chr13	protein_coding	ubiquitin interaction motif containing 1
known_NIR_4738	chr13	55224220	55225216	-	55217620	55225216	A3SS	ENSMUST00000099496.4	known	1.00	34	0	34	0	n	0.98	41	1	41	1	n	0.88	57	8	57	8	y	0.91	42	4	42	4	y	0.90	54	6	54	6	y	0.93	39	3	39	3	y	0.95	35	2	35	2	y	1.00	51	0	51	0	n	0.96	46	2	46	2	y	0.80	35	9	35	9	y	0.92	56	5	56	5	y	0.94	51	3	51	3	y	ENSMUSG00000025878.17	Uimc1	chr13	protein_coding	ubiquitin interaction motif containing 1
known_NIR_4739	chr13	55263437	55270095	+	55263437	55270143	A3SS	ENSMUST00000021937.12	known	0.33	1	2	1	2	n	1.00	2	0	2	0	n	0.57	4	3	4	3	n	0.62	5	3	5	3	n	0.00	0	6	0	6	n	0.25	1	3	1	3	n	0.53	9	8	9	8	y	0.50	3	3	3	3	n	0.00	0	3	0	3	n	0.33	2	4	2	4	n	0.67	2	1	2	1	n	0.17	1	5	1	5	n	ENSMUSG00000021481.12	Zfp346	chr13	protein_coding	zinc finger protein 346
known_NIR_4740	chr13	55270328	55280120	+	55270328	55278347	3pMXE	ENSMUST00000161551.8	known	0.62	5	3	5	3	n	0.00	0	7	0	7	n	0.29	2	5	2	5	n	0.12	1	7	1	7	n	0.20	3	12	3	12	y	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.29	2	5	2	5	n	0.00	0	6	0	6	n	0.11	1	8	1	8	n	0.20	1	4	1	4	n	0.22	2	7	2	7	n	ENSMUSG00000021481.12	Zfp346	chr13	protein_coding	zinc finger protein 346
known_NIR_4741	chr13	55270328	55280120	+	55270328;55278440	55278347;55280120	ES	ENSMUST00000021937.12	known	0.45	5	6.0	5	3;9	y	0.00	0	6.5	0	7;6	n	0.24	2	6.5	2	5;8	y	0.11	1	8.5	1	7;10	n	0.21	3	11.0	3	12;10	y	0.00	0	9.5	0	5;14	n	0.00	0	14.0	0	9;19	n	0.33	2	4.0	2	5;3	y	0.00	0	6.5	0	6;7	n	0.09	1	10.0	1	8;12	n	0.22	1	3.5	1	4;3	n	0.15	2	11.0	2	7;15	y	ENSMUSG00000021481.12	Zfp346	chr13	protein_coding	zinc finger protein 346
known_NIR_4742	chr13	55270328	55280120	+	55278440	55280120	5pMXE	ENSMUST00000162653.2	known	0.36	5	9	5	9	y	0.00	0	6	0	6	n	0.20	2	8	2	8	y	0.09	1	10	1	10	n	0.23	3	10	3	10	y	0.00	0	14	0	14	n	0.00	0	19	0	19	n	0.40	2	3	2	3	n	0.00	0	7	0	7	n	0.08	1	12	1	12	n	0.25	1	3	1	3	n	0.12	2	15	2	15	y	ENSMUSG00000021481.12	Zfp346	chr13	protein_coding	zinc finger protein 346
known_NIR_4743	chr13	55359813	55361017	+	55358878	55361017	A5SS	ENSMUST00000224156.2	known	1.00	8	0	8	0	n	1.00	6	0	6	0	n	1.00	16	0	16	0	n	1.00	7	0	7	0	n	0.94	16	1	16	1	n	1.00	17	0	17	0	n	1.00	13	0	13	0	n	0.93	13	1	13	1	n	1.00	9	0	9	0	n	1.00	16	0	16	0	n	0.80	8	2	8	2	y	1.00	10	0	10	0	n	ENSMUSG00000021488.9	Nsd1	chr13	protein_coding	nuclear receptor-binding SET-domain protein 1
known_NIR_4744	chr13	55359920	55361017	+	55359813	55361017	A5SS	ENSMUST00000224918.2	known	0.00	0	8	0	8	n	0.33	3	6	3	6	n	0.16	3	16	3	16	y	0.22	2	7	2	7	n	0.00	0	16	0	16	n	0.11	2	17	2	17	y	0.13	2	13	2	13	y	0.07	1	13	1	13	n	0.18	2	9	2	9	y	0.00	0	16	0	16	n	0.11	1	8	1	8	n	0.17	2	10	2	10	y	ENSMUSG00000021488.9	Nsd1	chr13	protein_coding	nuclear receptor-binding SET-domain protein 1
known_NIR_4745	chr13	55360430	55361017	+	55359813	55361017	A5SS	ENSMUST00000224918.2	known	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.06	1	16	1	16	n	0.30	3	7	3	7	y	0.06	1	16	1	16	n	0.00	0	17	0	17	n	0.07	1	13	1	13	n	0.00	0	13	0	13	n	0.10	1	9	1	9	n	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.17	2	10	2	10	y	ENSMUSG00000021488.9	Nsd1	chr13	protein_coding	nuclear receptor-binding SET-domain protein 1
known_NIR_4746	chr13	55386675	55388355	+	55386675	55393331	A3SS	ENSMUST00000099490.3	known	0.35	7	13	7	13	y	0.50	6	6	6	6	y	0.52	27	25	27	25	y	0.21	5	19	5	19	y	0.29	10	25	10	25	y	0.41	11	16	11	16	y	0.17	4	20	4	20	y	0.40	10	15	10	15	y	0.36	4	7	4	7	y	0.27	9	24	9	24	y	0.39	9	14	9	14	y	0.19	5	21	5	21	y	ENSMUSG00000021488.9	Nsd1	chr13	protein_coding	nuclear receptor-binding SET-domain protein 1
known_NIR_4747	chr13	55424454;55425240	55425087;55425345	+	55424454	55425345	cassetteExon	ENSMUST00000224973.2	known	0.05	1.5	27	2;1	27	n	0.03	0.5	18	1;0	18	n	0.03	1.5	46	1;2	46	n	0.07	2.5	33	2;3	33	y	0.03	1.0	29	0;2	29	n	0.18	4.5	21	4;5	21	y	0.12	5.5	39	4;7	39	y	0.06	2.0	29	0;4	29	n	0.00	0.0	29	0;0	29	n	0.02	0.5	31	0;1	31	n	0.03	0.5	17	1;0	17	n	0.12	3.5	26	4;3	26	y	ENSMUSG00000021488.9	Nsd1	chr13	protein_coding	nuclear receptor-binding SET-domain protein 1
known_NIR_4748	chr13	55468027	55468125	-	55468049	55468125	A3SS	ENSMUST00000224685.2	known	0.99	197	2	197	2	y	0.95	204	10	204	10	y	0.97	204	7	204	7	y	0.98	145	3	145	3	y	0.96	240	9	240	9	y	0.96	123	5	123	5	y	0.97	260	7	260	7	y	0.99	132	2	132	2	y	0.96	161	7	161	7	y	0.97	247	7	247	7	y	0.97	234	8	234	8	y	0.94	199	12	199	12	y	ENSMUSG00000034789.9	Rab24	chr13	protein_coding	RAB24, member RAS oncogene family
known_NIR_4749	chr13	55566313	55567930	-	55566313	55574116	A5SS	ENSMUST00000170921.2	known	1.00	1332	3	1332	3	y	1.00	1317	0	1317	0	n	1.00	1324	2	1324	2	y	1.00	1228	1	1228	1	n	1.00	1651	1	1651	1	n	1.00	891	0	891	0	n	1.00	1636	2	1636	2	y	1.00	813	0	813	0	n	0.99	1167	6	1167	6	y	1.00	1625	2	1625	2	y	1.00	1493	6	1493	6	y	1.00	1535	1	1535	1	n	ENSMUSG00000021492.16	F12	chr13	protein_coding	coagulation factor XII (Hageman factor)
known_NIR_4750	chr13	55570585	55574116	-	55566313	55574116	A3SS	ENSMUST00000170921.2	known	1.00	891	3	891	3	y	1.00	766	0	766	0	n	1.00	1213	2	1213	2	y	1.00	1143	1	1143	1	n	1.00	1254	1	1254	1	n	1.00	784	0	784	0	n	1.00	1153	2	1153	2	y	1.00	796	0	796	0	n	0.99	945	6	945	6	y	1.00	1292	2	1292	2	y	0.99	937	6	937	6	y	1.00	1231	1	1231	1	n	ENSMUSG00000021492.16	F12	chr13	protein_coding	coagulation factor XII (Hageman factor)
known_NIR_4751	chr13	55593373	55597121	+	55593094	55597121	A5SS	ENSMUST00000224653.2	known	1.00	15	0	15	0	n	1.00	11	0	11	0	n	1.00	28	0	28	0	n	1.00	20	0	20	0	n	1.00	36	0	36	0	n	1.00	17	0	17	0	n	1.00	29	0	29	0	n	1.00	13	0	13	0	n	1.00	12	0	12	0	n	1.00	30	0	30	0	n	1.00	15	0	15	0	n	0.90	26	3	26	3	y	ENSMUSG00000074886.12	Grk6	chr13	protein_coding	G protein-coupled receptor kinase 6
known_NIR_4752	chr13	55599396	55599531	+	55599396	55599516	A3SS	ENSMUST00000224653.2	known	0.00	0	32	0	32	n	0.00	0	27	0	27	n	0.00	0	60	0	60	n	0.00	0	46	0	46	n	0.02	1	54	1	54	n	0.00	0	16	0	16	n	0.00	0	43	0	43	n	0.00	0	29	0	29	n	0.00	0	31	0	31	n	0.02	1	51	1	51	n	0.00	0	25	0	25	n	0.04	2	44	2	44	y	ENSMUSG00000074886.12	Grk6	chr13	protein_coding	G protein-coupled receptor kinase 6
known_NIR_4753	chr13	55599656	55600050	+	55599656	55599948	A3SS	ENSMUST00000224653.2	known	0.00	0	21	0	21	n	0.00	0	37	0	37	n	0.02	1	41	1	41	n	0.06	2	32	2	32	y	0.00	0	40	0	40	n	0.00	0	23	0	23	n	0.05	2	41	2	41	y	0.00	0	14	0	14	n	0.03	1	33	1	33	n	0.00	0	47	0	47	n	0.00	0	32	0	32	n	0.00	0	38	0	38	n	ENSMUSG00000074886.12	Grk6	chr13	protein_coding	G protein-coupled receptor kinase 6
known_NIR_4754	chr13	55606960	55607146	+	55606960	55607595	A3SS	ENSMUST00000224653.2	known	0.07	2	27	2	27	y	0.12	3	21	3	21	y	0.03	1	37	1	37	n	0.00	0	21	0	21	n	0.19	8	34	8	34	y	0.00	0	17	0	17	n	0.00	0	34	0	34	n	0.05	1	20	1	20	n	0.14	3	19	3	19	y	0.08	2	22	2	22	y	0.12	3	22	3	22	y	0.03	1	34	1	34	n	ENSMUSG00000074886.12	Grk6	chr13	protein_coding	G protein-coupled receptor kinase 6
known_NIR_4755	chr13	55606960	55607146	+	55606960	55607597	A3SS	ENSMUST00000225925.2	known	0.22	2	7	2	7	n	0.33	3	6	3	6	n	0.08	1	11	1	11	n	0.00	0	4	0	4	n	0.50	8	8	8	8	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.17	1	5	1	5	n	0.43	3	4	3	4	n	0.17	2	10	2	10	y	0.38	3	5	3	5	n	0.20	1	4	1	4	n	ENSMUSG00000074886.12	Grk6	chr13	protein_coding	G protein-coupled receptor kinase 6
known_NIR_4756	chr13	55606960	55607597	+	55606960	55607595	A3SS	ENSMUST00000224653.2	known	0.21	7	27	7	27	y	0.22	6	21	6	21	y	0.23	11	37	11	37	y	0.16	4	21	4	21	y	0.19	8	34	8	34	y	0.15	3	17	3	17	y	0.13	5	34	5	34	y	0.20	5	20	5	20	y	0.17	4	19	4	19	y	0.31	10	22	10	22	y	0.19	5	22	5	22	y	0.11	4	34	4	34	y	ENSMUSG00000074886.12	Grk6	chr13	protein_coding	G protein-coupled receptor kinase 6
known_NIR_4757	chr13	55622374	55622673	-	55622371	55622673	A3SS	ENSMUST00000109923.9	known	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.38	5	8	5	8	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	ENSMUSG00000034675.18	Dbn1	chr13	protein_coding	drebrin 1
known_NIR_4758	chr13	55654936	55655143	-	55654180	55655143	A3SS	ENSMUST00000155098.8	known	0.69	11	5	11	5	y	0.38	6	10	6	10	y	0.29	10	24	10	24	y	0.67	6	3	6	3	n	0.29	8	20	8	20	y	0.62	5	3	5	3	n	0.69	18	8	18	8	y	0.32	6	13	6	13	y	0.75	6	2	6	2	n	0.64	9	5	9	5	y	0.70	7	3	7	3	y	0.48	10	11	10	11	y	ENSMUSG00000021493.16	Pdlim7	chr13	protein_coding	PDZ and LIM domain 7
known_NIR_4759	chr13	55655437	55656593	-	55655437;55656139	55656021;55656593	ES	ENSMUST00000155098.8	known	0.00	0	7.5	0	7;8	n	0.00	0	8.0	0	11;5	n	0.04	1	25.5	1	33;18	n	0.00	0	10.5	0	14;7	n	0.10	2	17.5	2	22;13	y	0.00	0	7.5	0	8;7	n	0.10	2	17.5	2	24;11	y	0.07	1	12.5	1	16;9	n	0.22	2	7.0	2	8;6	y	0.00	0	11.5	0	13;10	n	0.00	0	10.0	0	15;5	n	0.05	1	19.0	1	28;10	n	ENSMUSG00000021493.16	Pdlim7	chr13	protein_coding	PDZ and LIM domain 7
known_NIR_4760	chr13	55655437	55656593	-	55656139	55656593	A3SS	ENSMUST00000131306.8	known	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.05	1	18	1	18	n	0.00	0	7	0	7	n	0.13	2	13	2	13	y	0.00	0	7	0	7	n	0.15	2	11	2	11	y	0.10	1	9	1	9	n	0.25	2	6	2	6	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.09	1	10	1	10	n	ENSMUSG00000021493.16	Pdlim7	chr13	protein_coding	PDZ and LIM domain 7
known_NIR_4761	chr13	55655437;55655693	55655677;55656021	-	55655437	55656021	cassetteExon	ENSMUST00000155098.8	known	0.22	2.0	7	1;3	7	n	0.19	2.5	11	3;2	11	y	0.08	3.0	33	3;3	33	y	0.00	0.0	14	0;0	14	n	0.02	0.5	22	1;0	22	n	0.16	1.5	8	2;1	8	n	0.32	11.5	24	19;4	24	y	0.00	0.0	16	0;0	16	n	0.06	0.5	8	1;0	8	n	0.13	2.0	13	3;1	13	n	0.03	0.5	15	0;1	15	n	0.00	0.0	28	0;0	28	n	ENSMUSG00000021493.16	Pdlim7	chr13	protein_coding	PDZ and LIM domain 7
known_NIR_4762	chr13	55655437;55655693	55655677;55656593	-	55655437	55656593	cassetteExon	ENSMUST00000128910.8	known	1.00	0.5	0	1;0	0	n	1.00	1.5	0	3;0	0	n	0.67	2.0	1	3;1	1	n	-	-	-	-	-	-	0.33	1.0	2	1;1	2	n	1.00	1.0	0	2;0	0	n	0.89	16.5	2	19;14	2	y	0.00	0.0	1	0;0	1	n	0.33	1.0	2	1;1	2	n	1.00	2.5	0	3;2	0	n	-	-	-	-	-	-	0.00	0.0	1	0;0	1	n	ENSMUSG00000021493.16	Pdlim7	chr13	protein_coding	PDZ and LIM domain 7
known_NIR_4763	chr13	55655437;55655693	55655677;55656593	-	55655437;55656139	55656021;55656593	MXE	ENSMUST00000155098.8	known	0.06	0.5	7.5	1;0	7;8	n	0.16	1.5	8.0	3;0	11;5	n	0.07	2.0	25.5	3;1	33;18	n	0.00	0.0	10.5	0;0	14;7	n	0.05	1.0	17.5	1;1	22;13	n	0.12	1.0	7.5	2;0	8;7	n	0.49	16.5	17.5	19;14	24;11	y	0.00	0.0	12.5	0;0	16;9	n	0.12	1.0	7.0	1;1	8;6	n	0.18	2.5	11.5	3;2	13;10	y	0.00	0.0	10.0	0;0	15;5	n	0.00	0.0	19.0	0;0	28;10	n	ENSMUSG00000021493.16	Pdlim7	chr13	protein_coding	PDZ and LIM domain 7
known_NIR_4764	chr13	55655437;55656139	55655677;55656593	-	55655437	55656593	cassetteExon	ENSMUST00000128910.8	known	1.00	4.5	0	1;8	0	n	1.00	4.0	0	3;5	0	n	0.91	10.5	1	3;18	1	n	1.00	3.5	0	0;7	0	n	0.78	7.0	2	1;13	2	n	1.00	4.5	0	2;7	0	n	0.88	15.0	2	19;11	2	y	0.82	4.5	1	0;9	1	n	0.64	3.5	2	1;6	2	n	1.00	6.5	0	3;10	0	n	1.00	2.5	0	0;5	0	n	0.83	5.0	1	0;10	1	n	ENSMUSG00000021493.16	Pdlim7	chr13	protein_coding	PDZ and LIM domain 7
known_NIR_4765	chr13	55655693	55656593	-	55656139	55656593	A3SS	ENSMUST00000131306.8	known	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.05	1	18	1	18	n	0.00	0	7	0	7	n	0.07	1	13	1	13	n	0.00	0	7	0	7	n	0.56	14	11	14	11	y	0.00	0	9	0	9	n	0.14	1	6	1	6	n	0.17	2	10	2	10	y	0.00	0	5	0	5	n	0.00	0	10	0	10	n	ENSMUSG00000021493.16	Pdlim7	chr13	protein_coding	PDZ and LIM domain 7
known_NIR_4766	chr13	55655693;55656139	55656021;55656593	-	55655693	55656593	cassetteExon	ENSMUST00000069929.13	known	1.00	5.5	0	3;8	0	n	1.00	3.5	0	2;5	0	n	0.91	10.5	1	3;18	1	n	1.00	3.5	0	0;7	0	n	0.87	6.5	1	0;13	1	n	1.00	4.0	0	1;7	0	n	0.35	7.5	14	4;11	14	y	1.00	4.5	0	0;9	0	n	0.75	3.0	1	0;6	1	n	0.73	5.5	2	1;10	2	n	1.00	3.0	0	1;5	0	n	1.00	5.0	0	0;10	0	n	ENSMUSG00000021493.16	Pdlim7	chr13	protein_coding	PDZ and LIM domain 7
known_NIR_4767	chr13	55691602	55698037	-	55691602	55696931	A5SS	ENSMUST00000224486.2	known	0.17	18	88	18	88	y	0.05	5	95	5	95	y	0.19	11	48	11	48	y	0.09	8	83	8	83	y	0.12	15	107	15	107	y	0.14	6	36	6	36	y	0.15	12	68	12	68	y	0.05	3	55	3	55	y	0.15	11	61	11	61	y	0.14	15	91	15	91	y	0.14	16	96	16	96	y	0.15	15	83	15	83	y	ENSMUSG00000021495.11	Fam193b	chr13	protein_coding	family with sequence similarity 193, member B
known_NIR_4768	chr13	55691602;55697170	55696931;55698037	-	55691602	55698037	cassetteExon	ENSMUST00000225240.3	known	0.81	78.0	18	88;68	18	y	0.94	83.5	5	95;72	5	y	0.81	45.5	11	48;43	11	y	0.90	70.5	8	83;58	8	y	0.87	99.5	15	107;92	15	y	0.85	33.0	6	36;30	6	y	0.85	68.5	12	68;69	12	y	0.94	47.0	3	55;39	3	y	0.85	61.5	11	61;62	11	y	0.85	85.5	15	91;80	15	y	0.85	87.5	16	96;79	16	y	0.82	68.0	15	83;53	15	y	ENSMUSG00000021495.11	Fam193b	chr13	protein_coding	family with sequence similarity 193, member B
known_NIR_4769	chr13	55704038	55712333	-	55704038	55718588	A5SS	ENSMUST00000225240.3	known	0.98	82	2	82	2	y	1.00	48	0	48	0	n	0.93	42	3	42	3	y	1.00	49	0	49	0	n	0.97	61	2	61	2	y	1.00	29	0	29	0	n	0.98	63	1	63	1	n	1.00	18	0	18	0	n	1.00	35	0	35	0	n	0.99	67	1	67	1	n	1.00	52	0	52	0	n	0.97	75	2	75	2	y	ENSMUSG00000021495.11	Fam193b	chr13	protein_coding	family with sequence similarity 193, member B
known_NIR_4770	chr13	55748005	55751933	+	55748005	55751833	A3SS	ENSMUST00000100764.10	known	0.05	1	21	1	21	n	0.00	0	22	0	22	n	0.03	1	32	1	32	n	0.00	0	24	0	24	n	0.10	3	26	3	26	y	0.11	3	24	3	24	y	0.00	0	22	0	22	n	0.00	0	30	0	30	n	0.00	0	18	0	18	n	0.03	1	33	1	33	n	0.00	0	17	0	17	n	0.00	0	26	0	26	n	ENSMUSG00000021504.15	B4galt7	chr13	protein_coding	xylosylprotein beta1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I)
known_NIR_4771	chr13	55756238	55757032	+	55756238	55756511	3pMXE	ENSMUST00000133176.8	known	0.00	0	31	0	31	n	0.00	0	40	0	40	n	0.05	2	35	2	35	y	0.00	0	37	0	37	n	0.00	0	58	0	58	n	0.00	0	19	0	19	n	0.02	1	51	1	51	n	0.00	0	25	0	25	n	0.00	0	27	0	27	n	0.00	0	24	0	24	n	0.00	0	28	0	28	n	0.00	0	43	0	43	n	ENSMUSG00000021504.15	B4galt7	chr13	protein_coding	xylosylprotein beta1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I)
known_NIR_4772	chr13	55756238;55756615	55756511;55757032	+	55756238	55757032	cassetteExon	ENSMUST00000100764.10	known	1.00	32.0	0	31;33	0	n	1.00	36.0	0	40;32	0	n	0.95	40.0	2	35;45	2	y	1.00	37.0	0	37;37	0	n	1.00	53.0	0	58;48	0	n	1.00	16.0	0	19;13	0	n	0.98	45.0	1	51;39	1	n	1.00	24.5	0	25;24	0	n	1.00	24.5	0	27;22	0	n	1.00	29.0	0	24;34	0	n	1.00	32.0	0	28;36	0	n	1.00	36.5	0	43;30	0	n	ENSMUSG00000021504.15	B4galt7	chr13	protein_coding	xylosylprotein beta1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I)
known_NIR_4773	chr13	55821927	55823709	+	55821930	55823709	A5SS	ENSMUST00000172272.8	known	0.12	6	42	6	42	y	0.09	4	39	4	39	y	0.20	14	56	14	56	y	0.27	13	35	13	35	y	0.07	4	51	4	51	y	0.19	5	21	5	21	y	0.21	10	37	10	37	y	0.21	9	33	9	33	y	0.25	6	18	6	18	y	0.16	7	38	7	38	y	0.27	11	30	11	30	y	0.15	8	44	8	44	y	ENSMUSG00000021500.18	Ddx46	chr13	protein_coding	DEAD box helicase 46
known_NIR_4774	chr13	56232098	56236065	-	56232098	56237571	A5SS	ENSMUST00000141589.2	known	0.54	99	85	99	85	y	0.46	76	91	76	91	y	0.41	75	109	75	109	y	0.43	97	129	97	129	y	0.56	110	86	110	86	y	0.44	44	57	44	57	y	0.63	127	75	127	75	y	0.49	59	62	59	62	y	0.48	89	95	89	95	y	0.43	102	133	102	133	y	0.39	73	114	73	114	y	0.44	106	137	106	137	y	ENSMUSG00000015937.16	Macroh2a1	chr13	protein_coding	macroH2A.1 histone
known_NIR_4775	chr13	56232098;56236155	56236065;56243937	-	56232098;56237670	56237571;56243937	MXE	ENSMUST00000016081.13	known	0.53	99.0	86.5	99;99	85;88	y	0.44	80.5	101.5	76;85	91;112	y	0.34	67.0	133.0	75;59	109;157	y	0.44	100.0	129.5	97;103	129;130	y	0.60	121.0	80.0	110;132	86;74	y	0.42	44.0	61.5	44;44	57;66	y	0.61	139.5	89.5	127;152	75;104	y	0.48	57.5	63.0	59;56	62;64	y	0.46	89.5	103.0	89;90	95;111	y	0.42	102.0	139.0	102;102	133;145	y	0.46	88.0	104.0	73;103	114;94	y	0.45	105.0	127.5	106;104	137;118	y	ENSMUSG00000015937.16	Macroh2a1	chr13	protein_coding	macroH2A.1 histone
known_NIR_4776	chr13	56243454	56243937	-	56236155	56243937	A3SS	ENSMUST00000045788.9	known	0.11	12	99	12	99	y	0.11	10	85	10	85	y	0.33	29	59	29	59	y	0.12	14	103	14	103	y	0.08	12	132	12	132	y	0.25	15	44	15	44	y	0.07	11	152	11	152	y	0.14	9	56	9	56	y	0.06	6	90	6	90	y	0.12	14	102	14	102	y	0.06	7	103	7	103	y	0.10	11	104	11	104	y	ENSMUSG00000015937.16	Macroh2a1	chr13	protein_coding	macroH2A.1 histone
known_NIR_4777	chr13	56243454	56243937	-	56237670	56243937	A3SS	ENSMUST00000016081.13	known	0.12	12	88	12	88	y	0.08	10	112	10	112	y	0.16	29	157	29	157	y	0.10	14	130	14	130	y	0.14	12	74	12	74	y	0.19	15	66	15	66	y	0.10	11	104	11	104	y	0.12	9	64	9	64	y	0.05	6	111	6	111	y	0.09	14	145	14	145	y	0.07	7	94	7	94	y	0.09	11	118	11	118	y	ENSMUSG00000015937.16	Macroh2a1	chr13	protein_coding	macroH2A.1 histone
known_NIR_4778	chr13	56244044	56252115	-	56244047	56252115	A3SS	ENSMUST00000016081.13	known	0.63	125	72	125	72	y	0.58	111	80	111	80	y	0.70	161	68	161	68	y	0.69	143	64	143	64	y	0.61	143	90	143	90	y	0.58	64	47	64	47	y	0.65	145	77	145	77	y	0.67	87	43	87	43	y	0.59	107	73	107	73	y	0.67	149	72	149	72	y	0.62	123	74	123	74	y	0.65	143	77	143	77	y	ENSMUSG00000015937.16	Macroh2a1	chr13	protein_coding	macroH2A.1 histone
known_NIR_4779	chr13	56276294	56282463	-	56276294	56283159	A5SS	ENSMUST00000016081.13	known	0.00	0	109	0	109	n	0.00	0	82	0	82	n	0.00	0	154	0	154	n	0.00	0	113	0	113	n	0.00	0	171	0	171	n	0.00	0	92	0	92	n	0.00	0	119	0	119	n	0.00	0	76	0	76	n	0.00	0	101	0	101	n	0.00	0	144	0	144	n	0.00	0	102	0	102	n	0.01	2	132	2	132	y	ENSMUSG00000015937.16	Macroh2a1	chr13	protein_coding	macroH2A.1 histone
known_NIR_4780	chr13	56437620;56440387	56440274;56443639	-	56437620	56443639	cassetteExon	ENSMUST00000224801.2	known	1.00	11.5	0	14;9	0	n	1.00	8.0	0	8;8	0	n	0.99	442.5	3	413;472	3	y	1.00	12.5	0	10;15	0	n	1.00	84.5	0	71;98	0	n	1.00	174.5	0	167;182	0	n	1.00	39.0	0	39;39	0	n	1.00	62.5	0	55;70	0	n	1.00	9.0	0	6;12	0	n	1.00	8.0	0	7;9	0	n	1.00	9.0	0	8;10	0	n	1.00	11.0	0	10;12	0	n	ENSMUSG00000021508.12	Cxcl14	chr13	protein_coding	chemokine (C-X-C motif) ligand 14
known_NIR_4781	chr13	56671416;56673585	56673455;56674728	+	56671416	56674728	cassetteExon	ENSMUST00000121095.8	known	1.00	9.0	0	11;7	0	n	1.00	2.5	0	3;2	0	n	1.00	5.0	0	5;5	0	n	1.00	3.0	0	5;1	0	n	0.76	6.5	2	4;9	2	y	0.76	6.5	2	7;6	2	y	0.70	7.0	3	6;8	3	y	1.00	3.5	0	4;3	0	n	0.87	6.5	1	8;5	1	n	0.79	7.5	2	4;11	2	y	1.00	7.0	0	8;6	0	n	1.00	6.0	0	6;6	0	n	ENSMUSG00000035509.18	Fbxl21	chr13	protein_coding	F-box and leucine-rich repeat protein 21
known_NIR_4782	chr13	56690684;56690863	56690782;56693432	-	56690684	56693432	cassetteExon	ENSMUST00000062806.6	known	0.00	1.5	518	0;3	518	n	0.00	1.0	440	2;0	440	n	0.01	1.5	243	1;2	243	n	0.00	0.5	453	0;1	453	n	0.00	0.0	513	0;0	513	n	0.00	1.0	279	1;1	279	n	0.00	0.0	694	0;0	694	n	0.00	0.5	340	1;0	340	n	0.01	3.5	407	3;4	407	y	0.00	0.5	584	1;0	584	n	0.00	2.0	486	0;4	486	n	0.00	1.0	347	0;2	347	n	ENSMUSG00000021539.10	Lect2	chr13	protein_coding	leukocyte cell-derived chemotaxin 2
known_NIR_4783	chr13	56851625	56871242	+	56850944	56871242	A5SS	ENSMUST00000069557.14	known	0.27	3	8	3	8	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.33	3	6	3	6	n	0.00	0	2	0	2	n	0.50	3	3	3	3	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	ENSMUSG00000021540.17	Smad5	chr13	protein_coding	SMAD family member 5
known_NIR_4784	chr13	58308052	58311247	+	58308052;58310695	58310652;58311247	ES	ENSMUST00000051490.15	known	0.56	83	66.0	83	70;62	y	0.57	92	70.0	92	75;65	y	0.82	91	20.5	91	18;23	y	0.45	59	71.5	59	70;73	y	0.59	90	63.0	90	64;62	y	0.61	39	24.5	39	20;29	y	0.55	100	81.0	100	77;85	y	0.72	59	22.5	59	21;24	y	0.50	64	65.0	64	73;57	y	0.47	88	98.0	88	91;105	y	0.50	85	83.5	85	85;82	y	0.49	86	90.0	86	85;95	y	ENSMUSG00000050002.15	Idnk	chr13	protein_coding	idnK gluconokinase homolog (E. coli)
known_NIR_4785	chr13	58327476	58330996	-	58327482	58330996	A3SS	ENSMUST00000076454.8	known	0.00	0	116	0	116	n	0.00	0	71	0	71	n	0.12	12	91	12	91	y	0.00	0	106	0	106	n	0.11	22	170	22	170	y	0.00	0	58	0	58	n	0.07	10	130	10	130	y	0.00	0	73	0	73	n	0.00	0	95	0	95	n	0.13	17	117	17	117	y	0.00	0	97	0	97	n	0.00	0	116	0	116	n	ENSMUSG00000005312.16	Ubqln1	chr13	protein_coding	ubiquilin 1
known_NIR_4786	chr13	58327476	58330996	-	58328719	58330996	A3SS&ES	ENSMUST00000058735.12	known	0.00	0	155	0	155	n	0.00	0	102	0	102	n	0.04	12	298	12	298	y	0.00	0	238	0	238	n	0.07	22	274	22	274	y	0.00	0	161	0	161	n	0.04	10	222	10	222	y	0.00	0	135	0	135	n	0.00	0	131	0	131	n	0.08	17	195	17	195	y	0.00	0	137	0	137	n	0.00	0	157	0	157	n	ENSMUSG00000005312.16	Ubqln1	chr13	protein_coding	ubiquilin 1
known_NIR_4787	chr13	58327482	58330996	-	58327482	58328636	5pMXE	ENSMUST00000225818.2	known	0.48	116	125	116	125	y	0.44	71	89	71	89	y	0.25	91	269	91	269	y	0.35	106	196	106	196	y	0.43	170	229	170	229	y	0.31	58	131	58	131	y	0.42	130	182	130	182	y	0.38	73	119	73	119	y	0.46	95	111	95	111	y	0.42	117	159	117	159	y	0.45	97	118	97	118	y	0.43	116	153	116	153	y	ENSMUSG00000005312.16	Ubqln1	chr13	protein_coding	ubiquilin 1
known_NIR_4788	chr13	58327482	58330996	-	58327482;58328719	58328636;58330996	ES	ENSMUST00000058735.12	known	0.45	116	140.0	116	125;155	y	0.43	71	95.5	71	89;102	y	0.24	91	283.5	91	269;298	y	0.33	106	217.0	106	196;238	y	0.40	170	251.5	170	229;274	y	0.28	58	146.0	58	131;161	y	0.39	130	202.0	130	182;222	y	0.36	73	127.0	73	119;135	y	0.44	95	121.0	95	111;131	y	0.40	117	177.0	117	159;195	y	0.43	97	127.5	97	118;137	y	0.43	116	155.0	116	153;157	y	ENSMUSG00000005312.16	Ubqln1	chr13	protein_coding	ubiquilin 1
known_NIR_4789	chr13	58386526	58391616	-	58386526;58389569	58389468;58391616	ES	ENSMUST00000091579.6	known	0.17	10	50.5	10	40;61	y	0.24	16	51.0	16	51;51	y	0.27	11	29.5	11	28;31	y	0.14	8	48.0	8	44;52	y	0.16	11	58.5	11	58;59	y	0.15	4	23.5	4	28;19	y	0.23	19	63.0	19	60;66	y	0.06	2	29.5	2	26;33	y	0.30	11	25.5	11	26;25	y	0.19	13	57.0	13	55;59	y	0.24	16	51.0	16	46;56	y	0.16	12	63.5	12	63;64	y	ENSMUSG00000021552.8	Gkap1	chr13	protein_coding	G kinase anchoring protein 1
known_NIR_4790	chr13	58412013;58421635	58421448;58421888	-	58412013	58421888	cassetteExon	ENSMUST00000091579.6	known	0.08	1.5	17	2;1	17	n	0.06	1.0	16	2;0	16	n	0.12	1.0	7	2;0	7	n	0.20	3.5	14	2;5	14	y	0.03	1.0	32	0;2	32	n	0.00	0.0	12	0;0	12	n	0.08	2.5	27	3;2	27	y	0.00	0.0	9	0;0	9	n	0.06	1.0	17	2;0	17	n	0.02	0.5	30	0;1	30	n	0.12	2.0	14	4;0	14	n	0.10	3.5	31	3;4	31	y	ENSMUSG00000021552.8	Gkap1	chr13	protein_coding	G kinase anchoring protein 1
known_NIR_4791	chr13	58540230	58541010	-	58540290	58541010	A3SS	ENSMUST00000116403.9	known	0.21	105	407	105	407	y	0.15	85	471	85	471	y	0.12	89	653	89	653	y	0.21	105	403	105	403	y	0.21	161	621	161	621	y	0.18	72	327	72	327	y	0.21	160	599	160	599	y	0.14	58	345	58	345	y	0.18	90	413	90	413	y	0.20	153	598	153	598	y	0.27	165	444	165	444	y	0.18	118	534	118	534	y	ENSMUSG00000021546.19	Hnrnpk	chr13	protein_coding	heterogeneous nuclear ribonucleoprotein K
known_NIR_4792	chr13	58541055	58541506	-	58541179	58541506	A3SS	ENSMUST00000116403.9	known	0.00	0	633	0	633	n	0.00	0	556	0	556	n	0.00	1	898	1	898	n	0.00	0	652	0	652	n	0.00	2	883	2	883	y	0.00	0	465	0	465	n	0.00	0	872	0	872	n	0.00	0	438	0	438	n	0.00	0	588	0	588	n	0.00	0	755	0	755	n	0.00	2	651	2	651	y	0.00	0	792	0	792	n	ENSMUSG00000021546.19	Hnrnpk	chr13	protein_coding	heterogeneous nuclear ribonucleoprotein K
known_NIR_4793	chr13	58543501	58544641	-	58543501;58544073	58544002;58544641	ES	ENSMUST00000116403.9	known	0.05	21	376.5	21	442;311	y	0.05	13	270.0	13	320;220	y	0.05	30	598.5	30	677;520	y	0.04	21	469.0	21	539;399	y	0.04	22	550.0	22	636;464	y	0.03	7	272.5	7	313;232	y	0.03	12	448.5	12	507;390	y	0.02	8	345.5	8	387;304	y	0.05	16	316.0	16	338;294	y	0.05	28	490.0	28	569;411	y	0.03	9	323.5	9	361;286	y	0.04	20	453.0	20	513;393	y	ENSMUSG00000021546.19	Hnrnpk	chr13	protein_coding	heterogeneous nuclear ribonucleoprotein K
known_NIR_4794	chr13	58543501	58544641	-	58544073	58544641	3pMXE	ENSMUST00000177377.8	known	0.06	21	311	21	311	y	0.06	13	220	13	220	y	0.05	30	520	30	520	y	0.05	21	399	21	399	y	0.05	22	464	22	464	y	0.03	7	232	7	232	y	0.03	12	390	12	390	y	0.03	8	304	8	304	y	0.05	16	294	16	294	y	0.06	28	411	28	411	y	0.03	9	286	9	286	y	0.05	20	393	20	393	y	ENSMUSG00000021546.19	Hnrnpk	chr13	protein_coding	heterogeneous nuclear ribonucleoprotein K
known_NIR_4795	chr13	58544713	58546970	-	58544713	58545567	5pMXE	ENSMUST00000177497.8	known	0.02	8	371	8	371	y	0.00	0	246	0	246	n	0.01	3	597	3	597	y	0.01	3	549	3	549	y	0.01	5	560	5	560	y	0.00	1	303	1	303	n	0.00	2	487	2	487	y	0.00	0	345	0	345	n	0.02	5	308	5	308	y	0.01	3	506	3	506	y	0.02	7	312	7	312	y	0.01	7	507	7	507	y	ENSMUSG00000021546.19	Hnrnpk	chr13	protein_coding	heterogeneous nuclear ribonucleoprotein K
known_NIR_4796	chr13	58544713	58546970	-	58544713;58545610	58545567;58546970	ES	ENSMUST00000116403.9	known	0.02	8	349.0	8	371;327	y	0.00	0	240.0	0	246;234	n	0.01	3	575.5	3	597;554	y	0.01	3	522.5	3	549;496	y	0.01	5	551.5	5	560;543	y	0.00	1	287.5	1	303;272	n	0.00	2	464.5	2	487;442	y	0.00	0	333.5	0	345;322	n	0.02	5	290.5	5	308;273	y	0.01	3	484.0	3	506;462	y	0.02	7	303.0	7	312;294	y	0.01	7	475.5	7	507;444	y	ENSMUSG00000021546.19	Hnrnpk	chr13	protein_coding	heterogeneous nuclear ribonucleoprotein K
known_NIR_4797	chr13	58544713	58546970	-	58545610	58546970	3pMXE	ENSMUST00000176558.2	known	0.02	8	327	8	327	y	0.00	0	234	0	234	n	0.01	3	554	3	554	y	0.01	3	496	3	496	y	0.01	5	543	5	543	y	0.00	1	272	1	272	n	0.00	2	442	2	442	y	0.00	0	322	0	322	n	0.02	5	273	5	273	y	0.01	3	462	3	462	y	0.02	7	294	7	294	y	0.02	7	444	7	444	y	ENSMUSG00000021546.19	Hnrnpk	chr13	protein_coding	heterogeneous nuclear ribonucleoprotein K
known_NIR_4798	chr13	58547804	58548156	-	58547804	58548147	A5SS	ENSMUST00000116403.9	known	0.01	2	265	2	265	y	0.00	0	200	0	200	n	0.00	0	513	0	513	n	0.01	2	381	2	381	y	0.00	0	470	0	470	n	0.01	2	216	2	216	y	0.00	0	391	0	391	n	0.00	0	329	0	329	n	0.01	2	270	2	270	y	0.00	0	371	0	371	n	0.00	0	239	0	239	n	0.01	5	424	5	424	y	ENSMUSG00000021546.19	Hnrnpk	chr13	protein_coding	heterogeneous nuclear ribonucleoprotein K
known_NIR_4799	chr13	58548231	58548924	-	58548231	58550207	A5SS	ENSMUST00000224182.2	known	0.00	0	115	0	115	n	0.04	3	68	3	68	y	0.01	3	253	3	253	y	0.01	2	167	2	167	y	0.02	5	210	5	210	y	0.02	2	105	2	105	y	0.01	2	187	2	187	y	0.00	0	111	0	111	n	0.00	0	79	0	79	n	0.00	0	166	0	166	n	0.00	0	107	0	107	n	0.01	2	167	2	167	y	ENSMUSG00000021546.19	Hnrnpk	chr13	protein_coding	heterogeneous nuclear ribonucleoprotein K
known_NIR_4800	chr13	58548231	58549181	-	58548231	58549878	A5SS	ENSMUST00000116403.9	known	0.02	1	45	1	45	n	0.00	0	40	0	40	n	0.00	0	61	0	61	n	0.02	1	59	1	59	n	0.02	1	64	1	64	n	0.00	0	43	0	43	n	0.00	0	58	0	58	n	0.04	2	50	2	50	y	0.00	0	28	0	28	n	0.00	0	63	0	63	n	0.00	0	42	0	42	n	0.00	0	62	0	62	n	ENSMUSG00000021546.19	Hnrnpk	chr13	protein_coding	heterogeneous nuclear ribonucleoprotein K
known_NIR_4801	chr13	58548231	58549181	-	58548231	58550207	A5SS	ENSMUST00000224182.2	known	0.01	1	115	1	115	n	0.00	0	68	0	68	n	0.00	0	253	0	253	n	0.01	1	167	1	167	n	0.00	1	210	1	210	n	0.00	0	105	0	105	n	0.00	0	187	0	187	n	0.02	2	111	2	111	y	0.00	0	79	0	79	n	0.00	0	166	0	166	n	0.00	0	107	0	107	n	0.00	0	167	0	167	n	ENSMUSG00000021546.19	Hnrnpk	chr13	protein_coding	heterogeneous nuclear ribonucleoprotein K
known_NIR_4802	chr13	58548231	58549349	-	58548231	58549878	A5SS	ENSMUST00000116403.9	known	0.02	1	45	1	45	n	0.00	0	40	0	40	n	0.00	0	61	0	61	n	0.00	0	59	0	59	n	0.02	1	64	1	64	n	0.00	0	43	0	43	n	0.00	0	58	0	58	n	0.00	0	50	0	50	n	0.00	0	28	0	28	n	0.03	2	63	2	63	y	0.00	0	42	0	42	n	0.00	0	62	0	62	n	ENSMUSG00000021546.19	Hnrnpk	chr13	protein_coding	heterogeneous nuclear ribonucleoprotein K
known_NIR_4803	chr13	58548231	58549349	-	58548231	58550207	A5SS	ENSMUST00000224182.2	known	0.01	1	115	1	115	n	0.00	0	68	0	68	n	0.00	0	253	0	253	n	0.00	0	167	0	167	n	0.00	1	210	1	210	n	0.00	0	105	0	105	n	0.00	0	187	0	187	n	0.00	0	111	0	111	n	0.00	0	79	0	79	n	0.01	2	166	2	166	y	0.00	0	107	0	107	n	0.00	0	167	0	167	n	ENSMUSG00000021546.19	Hnrnpk	chr13	protein_coding	heterogeneous nuclear ribonucleoprotein K
known_NIR_4804	chr13	58548231	58549878	-	58548231	58548924	5pMXE	ENSMUST00000224524.2	known	1.00	45	0	45	0	n	0.93	40	3	40	3	y	0.95	61	3	61	3	y	0.97	59	2	59	2	y	0.93	64	5	64	5	y	0.96	43	2	43	2	y	0.97	58	2	58	2	y	1.00	50	0	50	0	n	1.00	28	0	28	0	n	1.00	63	0	63	0	n	1.00	42	0	42	0	n	0.97	62	2	62	2	y	ENSMUSG00000021546.19	Hnrnpk	chr13	protein_coding	heterogeneous nuclear ribonucleoprotein K
known_NIR_4805	chr13	58548231	58550207	-	58548231	58549878	5pMXE	ENSMUST00000225674.2	known	0.72	115	45	115	45	y	0.63	68	40	68	40	y	0.81	253	61	253	61	y	0.74	167	59	167	59	y	0.77	210	64	210	64	y	0.71	105	43	105	43	y	0.76	187	58	187	58	y	0.69	111	50	111	50	y	0.74	79	28	79	28	y	0.72	166	63	166	63	y	0.72	107	42	107	42	y	0.73	167	62	167	62	y	ENSMUSG00000021546.19	Hnrnpk	chr13	protein_coding	heterogeneous nuclear ribonucleoprotein K
known_NIR_4806	chr13	58550603	58554816	+	58550331	58554816	A5SS	ENSMUST00000225828.2	known	0.30	6	14	6	14	y	0.57	4	3	4	3	n	0.47	8	9	8	9	y	0.55	6	5	6	5	y	0.70	7	3	7	3	y	1.00	4	0	4	0	n	0.22	4	14	4	14	y	0.33	3	6	3	6	n	0.43	3	4	3	4	n	0.41	7	10	7	10	y	0.50	6	6	6	6	y	0.73	8	3	8	3	y	ENSMUSG00000035367.10	Rmi1	chr13	protein_coding	RecQ mediated genome instability 1
known_NIR_4807	chr13	58551433	58554816	+	58550331	58554816	A5SS	ENSMUST00000225828.2	known	0.42	10	14	10	14	y	0.57	4	3	4	3	n	0.25	3	9	3	9	y	0.50	5	5	5	5	y	0.77	10	3	10	3	y	-	-	-	-	-	-	0.22	4	14	4	14	y	0.45	5	6	5	6	y	0.33	2	4	2	4	n	0.23	3	10	3	10	y	0.33	3	6	3	6	n	0.50	3	3	3	3	n	ENSMUSG00000035367.10	Rmi1	chr13	protein_coding	RecQ mediated genome instability 1
known_NIR_4808	chr13	58551433	58554816	+	58550603	58554816	A5SS	ENSMUST00000042450.10	known	0.62	10	6	10	6	y	0.50	4	4	4	4	n	0.27	3	8	3	8	y	0.45	5	6	5	6	y	0.59	10	7	10	7	y	0.00	0	4	0	4	n	0.50	4	4	4	4	n	0.62	5	3	5	3	n	0.40	2	3	2	3	n	0.30	3	7	3	7	y	0.33	3	6	3	6	n	0.27	3	8	3	8	y	ENSMUSG00000035367.10	Rmi1	chr13	protein_coding	RecQ mediated genome instability 1
known_NIR_4809	chr13	59598128	59609811	-	59598128;59608443	59608283;59609811	ES	ENSMUST00000022040.14	known	0.09	3	31.5	3	36;27	y	0.05	1	21.0	1	26;16	n	0.06	1	17.0	1	18;16	n	0.05	1	19.5	1	21;18	n	0.09	2	21.5	2	23;20	y	0.13	1	6.5	1	6;7	n	0.14	5	30.0	5	32;28	y	0.17	2	10.0	2	8;12	y	0.15	3	16.5	3	14;19	y	0.03	1	32.0	1	37;27	n	0.11	3	23.5	3	27;20	y	0.11	4	33.5	4	35;32	y	ENSMUSG00000021557.16	Agtpbp1	chr13	protein_coding	ATP/GTP binding protein 1
known_NIR_4810	chr13	59602494	59608283	-	59598128	59608283	A3SS	ENSMUST00000022040.14	known	0.10	4	36	4	36	y	0.00	0	26	0	26	n	0.14	3	18	3	18	y	0.00	0	21	0	21	n	0.12	3	23	3	23	y	0.00	0	6	0	6	n	0.03	1	32	1	32	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.00	0	37	0	37	n	0.00	0	27	0	27	n	0.05	2	35	2	35	y	ENSMUSG00000021557.16	Agtpbp1	chr13	protein_coding	ATP/GTP binding protein 1
known_NIR_4811	chr13	59624952	59629074	-	59624952	59630331	A5SS	ENSMUST00000022040.14	known	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.17	2	10	2	10	y	0.00	0	5	0	5	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	ENSMUSG00000021557.16	Agtpbp1	chr13	protein_coding	ATP/GTP binding protein 1
known_NIR_4812	chr13	59624952	59643147	-	59624952;59630418	59630331;59643147	ES	ENSMUST00000022040.14	known	0.15	2	11.0	2	14;8	y	0.00	0	11.5	0	12;11	n	0.00	0	12.0	0	12;12	n	0.00	0	16.0	0	15;17	n	0.10	1	9.5	1	10;9	n	0.00	0	7.5	0	5;10	n	0.11	2	15.5	2	15;16	y	0.00	0	8.0	0	9;7	n	0.00	0	10.0	0	10;10	n	0.00	0	20.0	0	16;24	n	0.00	0	10.5	0	9;12	n	0.00	0	13.0	0	14;12	n	ENSMUSG00000021557.16	Agtpbp1	chr13	protein_coding	ATP/GTP binding protein 1
known_NIR_4813	chr13	59624952	59643147	-	59630418	59643147	3pMXE	ENSMUST00000165477.9	known	0.20	2	8	2	8	y	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	17	0	17	n	0.10	1	9	1	9	n	0.00	0	10	0	10	n	0.11	2	16	2	16	y	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	24	0	24	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	ENSMUSG00000021557.16	Agtpbp1	chr13	protein_coding	ATP/GTP binding protein 1
known_NIR_4814	chr13	59641684	59643147	-	59630418	59643147	A3SS	ENSMUST00000022040.14	known	0.11	1	8	1	8	n	0.00	0	11	0	11	n	0.08	1	12	1	12	n	0.00	0	17	0	17	n	0.18	2	9	2	9	y	0.00	0	10	0	10	n	0.11	2	16	2	16	y	0.12	1	7	1	7	n	0.00	0	10	0	10	n	0.00	0	24	0	24	n	0.08	1	12	1	12	n	0.00	0	12	0	12	n	ENSMUSG00000021557.16	Agtpbp1	chr13	protein_coding	ATP/GTP binding protein 1
known_NIR_4815	chr13	59659325	59660138	-	59655870	59660138	A3SS	ENSMUST00000022040.14	known	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.14	3	18	3	18	y	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	19	0	19	n	0.00	0	14	0	14	n	0.09	1	10	1	10	n	ENSMUSG00000021557.16	Agtpbp1	chr13	protein_coding	ATP/GTP binding protein 1
known_NIR_4816	chr13	59662109	59672960	-	59662109;59665504	59665467;59672960	ES	ENSMUST00000022040.14	known	0.24	2	6.5	2	5;8	y	0.00	0	4.5	0	4;5	n	0.21	2	7.5	2	9;6	y	0.26	3	8.5	3	10;7	y	0.17	2	10.0	2	9;11	y	0.00	0	3.0	0	3;3	n	0.00	0	10.0	0	12;8	n	0.00	0	4.0	0	4;4	n	0.00	0	11.5	0	13;10	n	0.00	0	18.0	0	17;19	n	0.00	0	2.5	0	3;2	n	0.00	0	12.5	0	13;12	n	ENSMUSG00000021557.16	Agtpbp1	chr13	protein_coding	ATP/GTP binding protein 1
known_NIR_4817	chr13	59662109	59672960	-	59665504	59672960	3pMXE	ENSMUST00000165598.8	known	0.20	2	8	2	8	y	0.00	0	5	0	5	n	0.25	2	6	2	6	n	0.30	3	7	3	7	y	0.15	2	11	2	11	y	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	19	0	19	n	0.00	0	2	0	2	n	0.00	0	12	0	12	n	ENSMUSG00000021557.16	Agtpbp1	chr13	protein_coding	ATP/GTP binding protein 1
known_NIR_4818	chr13	59676332	59679827	-	59676332;59679017	59678871;59679827	ES	ENSMUST00000022040.14	known	0.18	1	4.5	1	5;4	n	0.31	2	4.5	2	3;6	y	0.17	2	10.0	2	12;8	y	0.25	3	9.0	3	7;11	y	0.00	0	12.0	0	12;12	n	0.13	1	6.5	1	8;5	n	0.15	2	11.0	2	8;14	y	0.00	0	3.0	0	3;3	n	0.00	0	9.0	0	7;11	n	0.27	3	8.0	3	8;8	y	0.62	4	2.5	4	3;2	n	0.14	2	12.5	2	12;13	y	ENSMUSG00000021557.16	Agtpbp1	chr13	protein_coding	ATP/GTP binding protein 1
known_NIR_4819	chr13	59676332	59679827	-	59679017	59679827	3pMXE	ENSMUST00000166585.8	known	0.20	1	4	1	4	n	0.25	2	6	2	6	n	0.20	2	8	2	8	y	0.21	3	11	3	11	y	0.00	0	12	0	12	n	0.17	1	5	1	5	n	0.12	2	14	2	14	y	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.27	3	8	3	8	y	0.67	4	2	4	2	n	0.13	2	13	2	13	y	ENSMUSG00000021557.16	Agtpbp1	chr13	protein_coding	ATP/GTP binding protein 1
known_NIR_4820	chr13	59681053	59692201	-	59681053;59684187	59684063;59692201	ES	ENSMUST00000022040.14	known	0.00	0	11.5	0	15;8	n	0.00	0	7.0	0	9;5	n	0.00	0	11.0	0	10;12	n	0.00	0	7.5	0	7;8	n	0.14	2	12.0	2	14;10	y	0.00	0	3.0	0	3;3	n	0.00	0	6.5	0	4;9	n	0.00	0	9.0	0	7;11	n	0.00	0	10.0	0	8;12	n	0.00	0	13.5	0	15;12	n	0.00	0	8.0	0	11;5	n	0.00	0	12.5	0	18;7	n	ENSMUSG00000021557.16	Agtpbp1	chr13	protein_coding	ATP/GTP binding protein 1
known_NIR_4821	chr13	59681053	59692201	-	59684187	59692201	3pMXE	ENSMUST00000169434.2	known	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.17	2	10	2	10	y	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	ENSMUSG00000021557.16	Agtpbp1	chr13	protein_coding	ATP/GTP binding protein 1
known_NIR_4822	chr13	59692265	59704912	-	59692265	59705037	A5SS	ENSMUST00000022040.14	known	0.00	0	4	0	4	n	0.60	3	2	3	2	n	0.20	1	4	1	4	n	0.20	1	4	1	4	n	0.10	1	9	1	9	n	1.00	1	0	1	0	n	0.00	0	6	0	6	n	0.20	1	4	1	4	n	0.00	0	7	0	7	n	0.33	4	8	4	8	y	0.00	0	3	0	3	n	0.44	4	5	4	5	n	ENSMUSG00000021557.16	Agtpbp1	chr13	protein_coding	ATP/GTP binding protein 1
known_NIR_4823	chr13	59748858	59755060	+	59748885	59755060	A5SS	ENSMUST00000022038.15	known	0.06	2	30	2	30	y	0.00	0	31	0	31	n	0.00	0	41	0	41	n	0.00	0	40	0	40	n	0.00	0	39	0	39	n	0.00	0	23	0	23	n	0.00	0	39	0	39	n	0.00	0	27	0	27	n	0.00	0	54	0	54	n	0.02	1	65	1	65	n	0.00	0	33	0	33	n	0.00	0	51	0	51	n	ENSMUSG00000021555.16	Naa35	chr13	protein_coding	N(alpha)-acetyltransferase 35, NatC auxiliary subunit
known_NIR_4824	chr13	59756009	59757293	+	59756009	59756575	3pMXE	ENSMUST00000166923.9	known	0.00	0	26	0	26	n	0.04	1	23	1	23	n	0.05	1	20	1	20	n	0.00	0	45	0	45	n	0.00	0	33	0	33	n	0.00	0	15	0	15	n	0.07	2	27	2	27	y	0.05	1	19	1	19	n	0.00	0	34	0	34	n	0.05	2	41	2	41	y	0.00	0	19	0	19	n	0.00	0	42	0	42	n	ENSMUSG00000021555.16	Naa35	chr13	protein_coding	N(alpha)-acetyltransferase 35, NatC auxiliary subunit
known_NIR_4825	chr13	59756009	59757293	+	59756009;59756658	59756575;59757293	ES	ENSMUST00000022038.15	known	0.00	0	27.5	0	26;29	n	0.05	1	21.0	1	23;19	n	0.04	1	26.5	1	20;33	n	0.00	0	40.0	0	45;35	n	0.00	0	35.0	0	33;37	n	0.00	0	11.5	0	15;8	n	0.07	2	27.0	2	27;27	y	0.06	1	17.0	1	19;15	n	0.00	0	30.0	0	34;26	n	0.06	2	31.0	2	41;21	y	0.00	0	20.5	0	19;22	n	0.00	0	41.0	0	42;40	n	ENSMUSG00000021555.16	Naa35	chr13	protein_coding	N(alpha)-acetyltransferase 35, NatC auxiliary subunit
known_NIR_4826	chr13	59756009	59760451	+	59756009	59756575	3pMXE	ENSMUST00000166923.9	known	0.16	5	26	5	26	y	0.00	0	23	0	23	n	0.05	1	20	1	20	n	0.02	1	45	1	45	n	0.00	0	33	0	33	n	0.00	0	15	0	15	n	0.00	0	27	0	27	n	0.00	0	19	0	19	n	0.03	1	34	1	34	n	0.00	0	41	0	41	n	0.05	1	19	1	19	n	0.00	0	42	0	42	n	ENSMUSG00000021555.16	Naa35	chr13	protein_coding	N(alpha)-acetyltransferase 35, NatC auxiliary subunit
known_NIR_4827	chr13	59756009	59760451	+	59757407	59760451	5pMXE	ENSMUST00000163395.8	known	0.10	5	44	5	44	y	0.00	0	25	0	25	n	0.02	1	41	1	41	n	0.03	1	29	1	29	n	0.00	0	51	0	51	n	0.00	0	19	0	19	n	0.00	0	37	0	37	n	0.00	0	24	0	24	n	0.03	1	28	1	28	n	0.00	0	44	0	44	n	0.03	1	34	1	34	n	0.00	0	59	0	59	n	ENSMUSG00000021555.16	Naa35	chr13	protein_coding	N(alpha)-acetyltransferase 35, NatC auxiliary subunit
known_NIR_4828	chr13	59765840;59766092	59766045;59770680	+	59765840	59770680	cassetteExon	ENSMUST00000022038.15	known	0.00	0.0	37	0;0	37	n	0.00	0.0	40	0;0	40	n	0.03	2.0	64	2;2	64	y	0.00	0.0	58	0;0	58	n	0.00	0.0	56	0;0	56	n	0.00	0.0	24	0;0	24	n	0.00	0.0	48	0;0	48	n	0.00	0.0	31	0;0	31	n	0.00	0.0	49	0;0	49	n	0.00	0.0	71	0;0	71	n	0.00	0.0	30	0;0	30	n	0.02	1.5	59	1;2	59	n	ENSMUSG00000021555.16	Naa35	chr13	protein_coding	N(alpha)-acetyltransferase 35, NatC auxiliary subunit
known_NIR_4829	chr13	59772417	59773215	+	59772417	59773233	A3SS	ENSMUST00000022038.15	known	0.00	0	51	0	51	n	0.00	0	44	0	44	n	0.09	5	48	5	48	y	0.00	0	68	0	68	n	0.00	0	67	0	67	n	0.00	0	22	0	22	n	0.00	0	71	0	71	n	0.00	0	34	0	34	n	0.00	0	43	0	43	n	0.00	0	82	0	82	n	0.00	0	50	0	50	n	0.00	0	76	0	76	n	ENSMUSG00000021555.16	Naa35	chr13	protein_coding	N(alpha)-acetyltransferase 35, NatC auxiliary subunit
known_NIR_4830	chr13	59772417	59773278	+	59772417	59773233	A3SS	ENSMUST00000022038.15	known	0.00	0	51	0	51	n	0.00	0	44	0	44	n	0.00	0	48	0	48	n	0.00	0	68	0	68	n	0.00	0	67	0	67	n	0.00	0	22	0	22	n	0.00	0	71	0	71	n	0.00	0	34	0	34	n	0.07	3	43	3	43	y	0.09	8	82	8	82	y	0.07	4	50	4	50	y	0.00	0	76	0	76	n	ENSMUSG00000021555.16	Naa35	chr13	protein_coding	N(alpha)-acetyltransferase 35, NatC auxiliary subunit
known_NIR_4831	chr13	59910609	59916940	-	59910609	59917438	A5SS	ENSMUST00000057115.7	known	0.00	0	149	0	149	n	0.00	0	117	0	117	n	0.01	2	157	2	157	y	0.00	0	170	0	170	n	0.01	1	182	1	182	n	0.01	1	97	1	97	n	0.01	3	202	3	202	y	0.00	0	96	0	96	n	0.00	0	113	0	113	n	0.00	0	161	0	161	n	0.01	1	105	1	105	n	0.00	0	177	0	177	n	ENSMUSG00000044792.8	Isca1	chr13	protein_coding	iron-sulfur cluster assembly 1
known_NIR_4832	chr13	59910609	59929832	-	59910609	59917438	5pMXE	ENSMUST00000057115.7	known	0.00	0	149	0	149	n	0.00	0	117	0	117	n	0.00	0	157	0	157	n	0.00	0	170	0	170	n	0.01	1	182	1	182	n	0.00	0	97	0	97	n	0.00	0	202	0	202	n	0.00	0	96	0	96	n	0.00	0	113	0	113	n	0.00	0	161	0	161	n	0.00	0	105	0	105	n	0.01	2	177	2	177	y	ENSMUSG00000044792.8	Isca1	chr13	protein_coding	iron-sulfur cluster assembly 1
known_NIR_4833	chr13	59918160	59918741	+	59917672	59918741	A5SS	ENSMUST00000225619.2	known	1.00	3	0	3	0	n	1.00	7	0	7	0	n	1.00	3	0	3	0	n	0.75	3	1	3	1	n	0.60	6	4	6	4	y	1.00	5	0	5	0	n	1.00	4	0	4	0	n	0.86	6	1	6	1	n	1.00	6	0	6	0	n	1.00	7	0	7	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000089875.3	Etohd2	chr13	lncRNA	ethanol decreased 2
known_NIR_4834	chr13	59918160	59918741	+	59917947	59918741	A5SS	ENSMUST00000163053.3	known	0.75	3	1	3	1	n	0.78	7	2	7	2	n	1.00	3	0	3	0	n	1.00	3	0	3	0	n	1.00	6	0	6	0	n	0.83	5	1	5	1	n	0.57	4	3	4	3	n	0.60	6	4	6	4	y	1.00	6	0	6	0	n	0.78	7	2	7	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000089875.3	Etohd2	chr13	lncRNA	ethanol decreased 2
known_NIR_4835	chr13	59920673	59929832	-	59910609	59929832	A3SS	ENSMUST00000225581.2	known	1.00	45	0	45	0	n	1.00	48	0	48	0	n	1.00	76	0	76	0	n	1.00	55	0	55	0	n	0.99	87	1	87	1	n	1.00	32	0	32	0	n	1.00	63	0	63	0	n	1.00	41	0	41	0	n	1.00	50	0	50	0	n	1.00	89	0	89	0	n	1.00	68	0	68	0	n	0.97	68	2	68	2	y	ENSMUSG00000114763.2	Gm49354	chr13	protein_coding	predicted gene, 49354
known_NIR_4836	chr13	59920673	59929832	-	59920673	59926566	5pMXE	ENSMUST00000224845.2	known	0.49	45	47	45	47	y	0.53	48	43	48	43	y	0.68	76	36	76	36	y	0.54	55	46	55	46	y	0.55	87	70	87	70	y	0.62	32	20	32	20	y	0.44	63	81	63	81	y	0.64	41	23	41	23	y	0.55	50	41	50	41	y	0.54	89	76	89	76	y	0.59	68	47	68	47	y	0.52	68	63	68	63	y	ENSMUSG00000035248.10	Tut7	chr13	protein_coding	terminal uridylyl transferase 7
known_NIR_4837	chr13	59920673	59929832	-	59920673;59926629	59926566;59929832	ES	ENSMUST00000071703.6	known	0.58	45	33.0	45	47;19	y	0.60	48	31.5	48	43;20	y	0.71	76	30.5	76	36;25	y	0.62	55	34.0	55	46;22	y	0.66	87	45.5	87	70;21	y	0.69	32	14.5	32	20;9	y	0.55	63	52.5	63	81;24	y	0.69	41	18.5	41	23;14	y	0.60	50	34.0	50	41;27	y	0.62	89	54.5	89	76;33	y	0.65	68	37.0	68	47;27	y	0.59	68	47.5	68	63;32	y	ENSMUSG00000035248.10	Tut7	chr13	protein_coding	terminal uridylyl transferase 7
known_NIR_4838	chr13	59920673;59927015	59926566;59929832	-	59920673	59929832	cassetteExon	ENSMUST00000224480.2	known	0.46	38.5	45	47;30	45	y	0.38	30.0	48	43;17	48	y	0.29	31.0	76	36;26	76	y	0.41	38.0	55	46;30	55	y	0.40	57.0	87	70;44	87	y	0.37	18.5	32	20;17	32	y	0.50	62.0	63	81;43	63	y	0.30	17.5	41	23;12	41	y	0.45	40.5	50	41;40	50	y	0.43	67.0	89	76;58	89	y	0.37	40.0	68	47;33	68	y	0.42	50.0	68	63;37	68	y	ENSMUSG00000035248.10	Tut7	chr13	protein_coding	terminal uridylyl transferase 7
known_NIR_4839	chr13	59926629	59929832	-	59910609	59929832	A3SS	ENSMUST00000225581.2	known	1.00	19	0	19	0	n	1.00	20	0	20	0	n	1.00	25	0	25	0	n	1.00	22	0	22	0	n	0.95	21	1	21	1	n	1.00	9	0	9	0	n	1.00	24	0	24	0	n	1.00	14	0	14	0	n	1.00	27	0	27	0	n	1.00	33	0	33	0	n	1.00	27	0	27	0	n	0.94	32	2	32	2	y	ENSMUSG00000114763.2	Gm49354	chr13	protein_coding	predicted gene, 49354
known_NIR_4840	chr13	59926629;59927015	59926951;59929832	-	59926629	59929832	cassetteExon	ENSMUST00000071703.6	known	0.62	31.0	19	32;30	19	y	0.49	19.5	20	22;17	20	y	0.48	23.5	25	21;26	25	y	0.58	31.0	22	32;30	22	y	0.68	45.0	21	46;44	21	y	0.62	14.5	9	12;17	9	y	0.65	45.0	24	47;43	24	y	0.46	12.0	14	12;12	14	y	0.55	33.5	27	27;40	27	y	0.63	57.0	33	56;58	33	y	0.55	33.5	27	34;33	27	y	0.54	37.5	32	38;37	32	y	ENSMUSG00000035248.10	Tut7	chr13	protein_coding	terminal uridylyl transferase 7
known_NIR_4841	chr13	59927015	59929832	-	59910609	59929832	A3SS	ENSMUST00000225581.2	known	1.00	30	0	30	0	n	1.00	17	0	17	0	n	1.00	26	0	26	0	n	1.00	30	0	30	0	n	0.98	44	1	44	1	n	1.00	17	0	17	0	n	1.00	43	0	43	0	n	1.00	12	0	12	0	n	1.00	40	0	40	0	n	1.00	58	0	58	0	n	1.00	33	0	33	0	n	0.95	37	2	37	2	y	ENSMUSG00000114763.2	Gm49354	chr13	protein_coding	predicted gene, 49354
known_NIR_4842	chr13	59950010;59950925	59950806;59953037	-	59950010	59953037	cassetteExon	ENSMUST00000071703.6	known	0.08	3.0	33	2;4	33	y	0.12	2.0	15	2;2	15	y	0.10	5.0	43	5;5	43	y	0.12	6.0	44	2;10	44	y	0.01	1.0	71	0;2	71	n	0.08	1.0	12	2;0	12	n	0.09	4.5	44	4;5	44	y	0.13	4.0	26	6;2	26	y	0.06	3.5	51	4;3	51	y	0.05	2.5	46	3;2	46	y	0.05	2.0	35	1;3	35	n	0.07	4.0	54	5;3	54	y	ENSMUSG00000035248.10	Tut7	chr13	protein_coding	terminal uridylyl transferase 7
known_NIR_4843	chr13	59969924	59970447	-	59969924	59970895	A5SS	ENSMUST00000071703.6	known	0.91	29	3	29	3	y	1.00	19	0	19	0	n	0.88	44	6	44	6	y	0.82	47	10	47	10	y	0.88	67	9	67	9	y	0.89	25	3	25	3	y	0.88	46	6	46	6	y	0.85	29	5	29	5	y	0.83	25	5	25	5	y	0.86	66	11	66	11	y	0.87	40	6	40	6	y	0.79	48	13	48	13	y	ENSMUSG00000035248.10	Tut7	chr13	protein_coding	terminal uridylyl transferase 7
known_NIR_4844	chr13	59969924	59970790	-	59969924	59970447	A5SS	ENSMUST00000225576.2	known	0.00	0	29	0	29	n	0.17	4	19	4	19	y	0.02	1	44	1	44	n	0.06	3	47	3	47	y	0.01	1	67	1	67	n	0.00	0	25	0	25	n	0.04	2	46	2	46	y	0.09	3	29	3	29	y	0.24	8	25	8	25	y	0.07	5	66	5	66	y	0.05	2	40	2	40	y	0.06	3	48	3	48	y	ENSMUSG00000035248.10	Tut7	chr13	protein_coding	terminal uridylyl transferase 7
known_NIR_4845	chr13	59969924	59970790	-	59969924	59970895	A5SS	ENSMUST00000071703.6	known	0.00	0	3	0	3	n	1.00	4	0	4	0	n	0.14	1	6	1	6	n	0.23	3	10	3	10	y	0.10	1	9	1	9	n	0.00	0	3	0	3	n	0.25	2	6	2	6	n	0.38	3	5	3	5	n	0.62	8	5	8	5	y	0.31	5	11	5	11	y	0.25	2	6	2	6	n	0.19	3	13	3	13	y	ENSMUSG00000035248.10	Tut7	chr13	protein_coding	terminal uridylyl transferase 7
known_NIR_4846	chr13	60750073	60750239	+	60749924	60750239	A5SS	ENSMUST00000226059.2	known	0.12	2	15	2	15	y	0.12	1	7	1	7	n	0.27	3	8	3	8	y	0.07	2	25	2	25	y	0.15	5	28	5	28	y	0.00	0	15	0	15	n	0.26	5	14	5	14	y	0.17	2	10	2	10	y	0.08	2	23	2	23	y	0.08	3	36	3	36	y	0.00	0	18	0	18	n	0.23	7	24	7	24	y	ENSMUSG00000021559.15	Dapk1	chr13	protein_coding	death associated protein kinase 1
known_NIR_4847	chr13	60844266	60864500	+	60844266	60864492	A3SS	ENSMUST00000226059.2	known	0.03	1	30	1	30	n	0.00	0	34	0	34	n	0.00	0	25	0	25	n	0.03	2	57	2	57	y	0.00	0	76	0	76	n	0.00	0	15	0	15	n	0.07	3	39	3	39	y	0.08	2	24	2	24	y	0.00	0	57	0	57	n	0.02	1	55	1	55	n	0.09	5	52	5	52	y	0.03	2	64	2	64	y	ENSMUSG00000021559.15	Dapk1	chr13	protein_coding	death associated protein kinase 1
known_NIR_4848	chr13	60909698	60910171	+	60909677	60910171	A5SS	ENSMUST00000226059.2	known	0.33	7	14	7	14	y	0.44	12	15	12	15	y	0.38	3	5	3	5	n	0.47	9	10	9	10	y	0.32	6	13	6	13	y	0.33	3	6	3	6	n	0.30	8	19	8	19	y	0.00	0	4	0	4	n	0.29	5	12	5	12	y	0.45	14	17	14	17	y	0.23	6	20	6	20	y	0.19	6	26	6	26	y	ENSMUSG00000021559.15	Dapk1	chr13	protein_coding	death associated protein kinase 1
known_NIR_4849	chr13	61043533	61043835	-	61043533	61043759	A5SS	ENSMUST00000225732.2	known	1.00	10	0	10	0	n	0.82	9	2	9	2	y	0.95	18	1	18	1	n	1.00	2	0	2	0	n	1.00	11	0	11	0	n	0.88	7	1	7	1	n	1.00	14	0	14	0	n	0.88	7	1	7	1	n	1.00	3	0	3	0	n	1.00	4	0	4	0	n	1.00	11	0	11	0	n	0.83	5	1	5	1	n	ENSMUSG00000074874.11	Ctla2b	chr13	protein_coding	cytotoxic T lymphocyte-associated protein 2 beta
known_NIR_4850	chr13	61043957	61044052	-	61002763	61044052	A3SS	ENSMUST00000225690.2	known	1.00	29	0	29	0	n	0.97	29	1	29	1	n	0.94	45	3	45	3	y	1.00	14	0	14	0	n	1.00	34	0	34	0	n	0.96	25	1	25	1	n	0.96	23	1	23	1	n	1.00	16	0	16	0	n	1.00	15	0	15	0	n	0.94	15	1	15	1	n	0.96	27	1	27	1	n	0.93	13	1	13	1	n	ENSMUSG00000114635.2	Gm49392	chr13	protein_coding	predicted gene, 49392
known_NIR_4851	chr13	61044559	61084284	-	61044559	61045149	5pMXE	ENSMUST00000021884.10	known	0.00	0	20	0	20	n	0.00	0	17	0	17	n	0.04	2	53	2	53	y	0.00	0	16	0	16	n	0.00	0	42	0	42	n	0.06	2	29	2	29	y	0.00	0	35	0	35	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	ENSMUSG00000074874.11	Ctla2b	chr13	protein_coding	cytotoxic T lymphocyte-associated protein 2 beta
known_NIR_4852	chr13	61083889	61084284	-	61044559	61084284	A3SS	ENSMUST00000225802.2	known	1.00	1	0	1	0	n	-	-	-	-	-	-	0.82	9	2	9	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	2	2	2	2	n	-	-	-	-	-	-	1.00	2	0	2	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	n	1.00	1	0	1	0	n	ENSMUSG00000114432.2	Gm49391	chr13	protein_coding	predicted gene, 49391
known_NIR_4853	chr13	61083889	61084284	-	61083889	61084200	A5SS	ENSMUST00000225385.2	known	1.00	1	0	1	0	n	-	-	-	-	-	-	0.82	9	2	9	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	n	-	-	-	-	-	-	1.00	2	0	2	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	n	1.00	1	0	1	0	n	ENSMUSG00000044258.11	Ctla2a	chr13	protein_coding	cytotoxic T lymphocyte-associated protein 2 alpha
known_NIR_4854	chr13	61083889	61084284	-	61083889	61084305	A5SS	ENSMUST00000225167.2	known	0.04	1	24	1	24	n	0.00	0	9	0	9	n	0.06	9	143	9	143	y	0.00	0	10	0	10	n	0.02	1	61	1	61	n	0.04	2	47	2	47	y	0.00	0	55	0	55	n	0.06	2	34	2	34	y	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.13	2	13	2	13	y	0.06	1	15	1	15	n	ENSMUSG00000114432.2	Gm49391	chr13	protein_coding	predicted gene, 49391
known_NIR_4855	chr13	61083889	61084305	-	61083889	61084200	A5SS	ENSMUST00000225385.2	known	1.00	24	0	24	0	n	1.00	9	0	9	0	n	0.99	143	2	143	2	y	1.00	10	0	10	0	n	1.00	61	0	61	0	n	1.00	47	0	47	0	n	1.00	55	0	55	0	n	1.00	34	0	34	0	n	1.00	5	0	5	0	n	1.00	10	0	10	0	n	1.00	13	0	13	0	n	1.00	15	0	15	0	n	ENSMUSG00000044258.11	Ctla2a	chr13	protein_coding	cytotoxic T lymphocyte-associated protein 2 alpha
known_NIR_4856	chr13	61083930	61084305	-	61083889	61084305	A3SS	ENSMUST00000225167.2	known	0.00	0	24	0	24	n	0.00	0	9	0	9	n	0.02	3	143	3	143	y	0.00	0	10	0	10	n	0.00	0	61	0	61	n	0.02	1	47	1	47	n	0.00	0	55	0	55	n	0.00	0	34	0	34	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	15	0	15	n	ENSMUSG00000114432.2	Gm49391	chr13	protein_coding	predicted gene, 49391
known_NIR_4857	chr13	61151929	61152239	-	61151932	61152239	A3SS	ENSMUST00000224224.2	known	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	18	0	18	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.28	5	13	5	13	y	0.00	0	6	0	6	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000055298.7	Ctsj	chr13	protein_coding	cathepsin J
known_NIR_4858	chr13	63012981	63015153	-	63012981	63018980	A5SS	ENSMUST00000150013.2	known	1.00	3330	4	3330	4	y	1.00	3738	2	3738	2	y	1.00	10918	19	10918	19	y	1.00	4332	5	4332	5	y	1.00	4743	8	4743	8	y	1.00	6550	8	6550	8	y	1.00	5534	6	5534	6	y	1.00	3410	4	3410	4	y	1.00	3380	6	3380	6	y	1.00	5618	7	5618	7	y	1.00	3616	6	3616	6	y	1.00	5956	7	5956	7	y	ENSMUSG00000069805.11	Fbp1	chr13	protein_coding	fructose bisphosphatase 1
known_NIR_4859	chr13	63016933	63018980	-	63012981	63018980	A3SS	ENSMUST00000150013.2	known	1.00	2641	4	2641	4	y	1.00	2677	2	2677	2	y	1.00	9216	19	9216	19	y	1.00	3623	5	3623	5	y	1.00	3744	8	3744	8	y	1.00	5335	8	5335	8	y	1.00	4065	6	4065	6	y	1.00	2786	4	2786	4	y	1.00	2586	6	2586	6	y	1.00	4461	7	4461	7	y	1.00	2955	6	2955	6	y	1.00	4845	7	4845	7	y	ENSMUSG00000069805.11	Fbp1	chr13	protein_coding	fructose bisphosphatase 1
known_NIR_4860	chr13	63023125	63035465	-	63023125	63035688	A5SS	ENSMUST00000092888.11	known	0.00	2	2890	2	2890	y	0.00	2	2486	2	2486	y	0.00	7	10630	7	10630	y	0.00	4	4173	4	4173	y	0.00	8	4433	8	4433	y	0.00	6	6304	6	6304	y	0.00	3	4167	3	4167	y	0.00	2	3448	2	3448	y	0.00	0	2818	0	2818	n	0.00	5	4831	5	4831	y	0.00	1	2996	1	2996	n	0.00	4	5585	4	5585	y	ENSMUSG00000069805.11	Fbp1	chr13	protein_coding	fructose bisphosphatase 1
known_NIR_4861	chr13	63388145	63388538	+	63388145	63429956	A3SS	ENSMUST00000091560.11	known	0.03	1	36	1	36	n	0.00	0	31	0	31	n	0.01	1	70	1	70	n	0.05	2	38	2	38	y	0.00	0	50	0	50	n	0.00	0	34	0	34	n	0.03	1	32	1	32	n	0.00	0	16	0	16	n	0.00	0	34	0	34	n	0.07	3	37	3	37	y	0.00	0	36	0	36	n	0.02	1	52	1	52	n	ENSMUSG00000021458.18	Aopep	chr13	protein_coding	aminopeptidase O
known_NIR_4862	chr13	63388145	63444672	+	63388145;63430072	63429956;63444672	ES	ENSMUST00000091560.11	known	0.04	2	49.5	2	36;63	y	0.00	0	47.5	0	31;64	n	0.00	0	79.0	0	70;88	n	0.00	0	51.5	0	38;65	n	0.00	0	73.0	0	50;96	n	0.00	0	34.5	0	34;35	n	0.00	0	52.0	0	32;72	n	0.00	0	21.5	0	16;27	n	0.00	0	40.0	0	34;46	n	0.02	1	46.0	1	37;55	n	0.00	0	38.5	0	36;41	n	0.00	0	64.5	0	52;77	n	ENSMUSG00000021458.18	Aopep	chr13	protein_coding	aminopeptidase O
known_NIR_4863	chr13	63388145	63444672	+	63430072	63444672	5pMXE	ENSMUST00000221501.2	known	0.03	2	63	2	63	y	0.00	0	64	0	64	n	0.00	0	88	0	88	n	0.00	0	65	0	65	n	0.00	0	96	0	96	n	0.00	0	35	0	35	n	0.00	0	72	0	72	n	0.00	0	27	0	27	n	0.00	0	46	0	46	n	0.02	1	55	1	55	n	0.00	0	41	0	41	n	0.00	0	77	0	77	n	ENSMUSG00000021458.18	Aopep	chr13	protein_coding	aminopeptidase O
known_NIR_4864	chr13	63421163	63429956	+	63388145	63429956	A5SS	ENSMUST00000091560.11	known	0.16	7	36	7	36	y	0.21	8	31	8	31	y	0.20	17	70	17	70	y	0.16	7	38	7	38	y	0.19	12	50	12	50	y	0.23	10	34	10	34	y	0.33	16	32	16	32	y	0.20	4	16	4	16	y	0.11	4	34	4	34	y	0.16	7	37	7	37	y	0.20	9	36	9	36	y	0.16	10	52	10	52	y	ENSMUSG00000021458.18	Aopep	chr13	protein_coding	aminopeptidase O
known_NIR_4865	chr13	63421222	63429956	+	63388145	63429956	A5SS	ENSMUST00000091560.11	known	0.00	0	36	0	36	n	0.03	1	31	1	31	n	0.04	3	70	3	70	y	0.10	4	38	4	38	y	0.04	2	50	2	50	y	0.03	1	34	1	34	n	0.06	2	32	2	32	y	0.11	2	16	2	16	y	0.06	2	34	2	34	y	0.10	4	37	4	37	y	0.03	1	36	1	36	n	0.00	0	52	0	52	n	ENSMUSG00000021458.18	Aopep	chr13	protein_coding	aminopeptidase O
known_NIR_4866	chr13	63421222	63429956	+	63421163	63429956	A5SS	ENSMUST00000220885.2	known	0.00	0	7	0	7	n	0.11	1	8	1	8	n	0.15	3	17	3	17	y	0.36	4	7	4	7	y	0.14	2	12	2	12	y	0.09	1	10	1	10	n	0.11	2	16	2	16	y	0.33	2	4	2	4	n	0.33	2	4	2	4	n	0.36	4	7	4	7	y	0.10	1	9	1	9	n	0.00	0	10	0	10	n	ENSMUSG00000021458.18	Aopep	chr13	protein_coding	aminopeptidase O
known_NIR_4867	chr13	63427004	63429956	+	63388145	63429956	A5SS	ENSMUST00000091560.11	known	0.00	0	36	0	36	n	0.00	0	31	0	31	n	0.03	2	70	2	70	y	0.00	0	38	0	38	n	0.00	0	50	0	50	n	0.00	0	34	0	34	n	0.00	0	32	0	32	n	0.00	0	16	0	16	n	0.00	0	34	0	34	n	0.00	0	37	0	37	n	0.00	0	36	0	36	n	0.00	0	52	0	52	n	ENSMUSG00000021458.18	Aopep	chr13	protein_coding	aminopeptidase O
known_NIR_4868	chr13	63427004	63429956	+	63421163	63429956	A5SS	ENSMUST00000220885.2	known	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.11	2	17	2	17	y	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	ENSMUSG00000021458.18	Aopep	chr13	protein_coding	aminopeptidase O
known_NIR_4869	chr13	63430072	63434629	+	63430072	63444672	A3SS	ENSMUST00000091560.11	known	0.05	3	63	3	63	y	0.03	2	64	2	64	y	0.07	7	88	7	88	y	0.02	1	65	1	65	n	0.06	6	96	6	96	y	0.03	1	35	1	35	n	0.00	0	72	0	72	n	0.10	3	27	3	27	y	0.00	0	46	0	46	n	0.07	4	55	4	55	y	0.02	1	41	1	41	n	0.07	6	77	6	77	y	ENSMUSG00000021458.18	Aopep	chr13	protein_coding	aminopeptidase O
known_NIR_4870	chr13	63430072	63442827	+	63430072	63434629	3pMXE	ENSMUST00000222680.2	known	0.40	2	3	2	3	n	0.33	1	2	1	2	n	0.42	5	7	5	7	y	0.67	2	1	2	1	n	0.00	0	6	0	6	n	0.75	3	1	3	1	n	1.00	5	0	5	0	n	0.00	0	3	0	3	n	1.00	2	0	2	0	n	0.43	3	4	3	4	n	0.67	2	1	2	1	n	0.14	1	6	1	6	n	ENSMUSG00000021458.18	Aopep	chr13	protein_coding	aminopeptidase O
known_NIR_4871	chr13	63430072	63442827	+	63430072	63444672	A3SS	ENSMUST00000091560.11	known	0.03	2	63	2	63	y	0.02	1	64	1	64	n	0.05	5	88	5	88	y	0.03	2	65	2	65	y	0.00	0	96	0	96	n	0.08	3	35	3	35	y	0.06	5	72	5	72	y	0.00	0	27	0	27	n	0.04	2	46	2	46	y	0.05	3	55	3	55	y	0.05	2	41	2	41	y	0.01	1	77	1	77	n	ENSMUSG00000021458.18	Aopep	chr13	protein_coding	aminopeptidase O
known_NIR_4872	chr13	63446670	63448419	+	63446670	63449593	A3SS	ENSMUST00000021911.15	known	0.02	1	40	1	40	n	0.02	1	40	1	40	n	0.00	0	60	0	60	n	0.02	1	48	1	48	n	0.02	1	52	1	52	n	0.00	0	32	0	32	n	0.02	1	57	1	57	n	0.00	0	19	0	19	n	0.07	2	25	2	25	y	0.00	0	50	0	50	n	0.00	0	26	0	26	n	0.00	0	36	0	36	n	ENSMUSG00000021458.18	Aopep	chr13	protein_coding	aminopeptidase O
known_NIR_4873	chr13	63446670	63448936	+	63446670	63471593	A3SS	ENSMUST00000159152.3	known	1.00	11	0	11	0	n	1.00	14	0	14	0	n	0.85	11	2	11	2	y	1.00	7	0	7	0	n	1.00	19	0	19	0	n	1.00	4	0	4	0	n	1.00	7	0	7	0	n	1.00	5	0	5	0	n	1.00	2	0	2	0	n	1.00	12	0	12	0	n	1.00	3	0	3	0	n	1.00	6	0	6	0	n	ENSMUSG00000021458.18	Aopep	chr13	protein_coding	aminopeptidase O
known_NIR_4874	chr13	63446670	63449593	+	63449207	63449593	5pMXE	ENSMUST00000222846.2	known	0.89	40	5	40	5	y	0.89	40	5	40	5	y	0.90	60	7	60	7	y	0.92	48	4	48	4	y	0.80	52	13	52	13	y	0.86	32	5	32	5	y	0.97	57	2	57	2	y	0.83	19	4	19	4	y	0.93	25	2	25	2	y	0.94	50	3	50	3	y	0.81	26	6	26	6	y	0.84	36	7	36	7	y	ENSMUSG00000021458.18	Aopep	chr13	protein_coding	aminopeptidase O
known_NIR_4875	chr13	63446670	63471593	+	63446670	63449593	3pMXE	ENSMUST00000021911.15	known	0.00	0	40	0	40	n	0.00	0	40	0	40	n	0.03	2	60	2	60	y	0.00	0	48	0	48	n	0.00	0	52	0	52	n	0.00	0	32	0	32	n	0.00	0	57	0	57	n	0.00	0	19	0	19	n	0.00	0	25	0	25	n	0.00	0	50	0	50	n	0.00	0	26	0	26	n	0.00	0	36	0	36	n	ENSMUSG00000021458.18	Aopep	chr13	protein_coding	aminopeptidase O
known_NIR_4876	chr13	63446670;63449120	63448936;63449593	+	63446670	63449593	cassetteExon	ENSMUST00000021911.15	known	0.26	14.0	40	11;17	40	y	0.24	12.5	40	14;11	40	y	0.14	10.0	60	11;9	60	y	0.10	5.5	48	7;4	48	y	0.25	17.0	52	19;15	52	y	0.10	3.5	32	4;3	32	y	0.16	11.0	57	7;15	57	y	0.28	7.5	19	5;10	19	y	0.12	3.5	25	2;5	25	y	0.22	14.0	50	12;16	50	y	0.22	7.5	26	3;12	26	y	0.19	8.5	36	6;11	36	y	ENSMUSG00000021458.18	Aopep	chr13	protein_coding	aminopeptidase O
known_NIR_4877	chr13	63446670;63449207	63448936;63449593	+	63446670	63449593	cassetteExon	ENSMUST00000021911.15	known	0.17	8.0	40	11;5	40	y	0.19	9.5	40	14;5	40	y	0.13	9.0	60	11;7	60	y	0.10	5.5	48	7;4	48	y	0.24	16.0	52	19;13	52	y	0.12	4.5	32	4;5	32	y	0.07	4.5	57	7;2	57	y	0.19	4.5	19	5;4	19	y	0.07	2.0	25	2;2	25	y	0.13	7.5	50	12;3	50	y	0.15	4.5	26	3;6	26	y	0.15	6.5	36	6;7	36	y	ENSMUSG00000021458.18	Aopep	chr13	protein_coding	aminopeptidase O
known_NIR_4878	chr13	63449207	63449593	+	63449120	63449593	A5SS	ENSMUST00000220485.2	known	0.23	5	17	5	17	y	0.31	5	11	5	11	y	0.44	7	9	7	9	y	0.50	4	4	4	4	n	0.46	13	15	13	15	y	0.62	5	3	5	3	n	0.12	2	15	2	15	y	0.29	4	10	4	10	y	0.29	2	5	2	5	n	0.16	3	16	3	16	y	0.33	6	12	6	12	y	0.39	7	11	7	11	y	ENSMUSG00000021458.18	Aopep	chr13	protein_coding	aminopeptidase O
known_NIR_4879	chr13	63469476	63469681	-	63465370	63469681	A3SS	ENSMUST00000073029.13	known	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.06	5	80	5	80	y	0.00	0	9	0	9	n	0.00	0	16	0	16	n	0.00	0	24	0	24	n	0.00	0	28	0	28	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	22	0	22	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	ENSMUSG00000021461.18	Fancc	chr13	protein_coding	Fanconi anemia, complementation group C
known_NIR_4880	chr13	63471303	63472724	-	63471303	63473365	A5SS	ENSMUST00000220684.2	known	0.00	0	12	0	12	n	0.20	3	12	3	12	y	0.41	24	34	24	34	y	0.00	0	8	0	8	n	0.06	1	15	1	15	n	0.43	6	8	6	8	y	0.05	1	20	1	20	n	0.25	2	6	2	6	n	0.08	1	11	1	11	n	0.10	1	9	1	9	n	0.15	2	11	2	11	y	0.00	0	14	0	14	n	ENSMUSG00000021461.18	Fancc	chr13	protein_coding	Fanconi anemia, complementation group C
known_NIR_4881	chr13	63711629	63712272	-	63711629	63713176	A5SS	ENSMUST00000021921.11	known	1.00	2	0	2	0	n	0.89	8	1	8	1	n	0.40	2	3	2	3	n	0.50	6	6	6	6	y	0.60	3	2	3	2	n	0.50	3	3	3	3	n	0.92	11	1	11	1	n	0.88	7	1	7	1	n	0.71	5	2	5	2	n	0.80	8	2	8	2	y	1.00	2	0	2	0	n	0.70	7	3	7	3	y	ENSMUSG00000021466.13	Ptch1	chr13	protein_coding	patched 1
known_NIR_4882	chr13	63982603	63984235	+	63982603	63989238	A3SS	ENSMUST00000021926.13	known	0.33	3	6	3	6	n	0.00	0	4	0	4	n	0.43	9	12	9	12	y	0.29	6	15	6	15	y	0.24	4	13	4	13	y	0.45	5	6	5	6	y	0.08	1	12	1	12	n	0.36	4	7	4	7	y	0.18	3	14	3	14	y	0.00	0	18	0	18	n	0.25	1	3	1	3	n	0.33	5	10	5	10	y	ENSMUSG00000021470.20	Ercc6l2	chr13	protein_coding	excision repair cross-complementing rodent repair deficiency, complementation group 6 like 2
known_NIR_4883	chr13	64245498	64247084	-	64245498;64246211	64246129;64247084	ES	ENSMUST00000099441.6	known	0.03	2	72.5	2	73;72	y	0.00	0	66.0	0	59;73	n	0.07	4	53.0	4	44;62	y	0.02	2	100.5	2	80;121	y	0.02	3	120.5	3	104;137	y	0.02	1	51.0	1	47;55	n	0.02	2	103.0	2	91;115	y	0.04	2	44.0	2	44;44	y	0.00	0	97.5	0	83;112	n	0.06	7	119.0	7	99;139	y	0.00	0	120.0	0	127;113	n	0.02	2	119.5	2	106;133	y	ENSMUSG00000033114.12	Slc35d2	chr13	protein_coding	solute carrier family 35, member D2
known_NIR_4884	chr13	64260815	64266230	-	64260815	64277000	A5SS	ENSMUST00000222866.2	known	1.00	33	0	33	0	n	0.92	22	2	22	2	y	0.94	34	2	34	2	y	0.98	56	1	56	1	n	0.92	72	6	72	6	y	1.00	31	0	31	0	n	0.95	40	2	40	2	y	1.00	40	0	40	0	n	1.00	32	0	32	0	n	1.00	33	0	33	0	n	0.97	38	1	38	1	n	1.00	42	0	42	0	n	ENSMUSG00000033114.12	Slc35d2	chr13	protein_coding	solute carrier family 35, member D2
known_NIR_4885	chr13	64260815	64268409	-	64260815;64266297	64266230;64268409	ES	ENSMUST00000099441.6	known	0.34	16	31.0	16	33;29	y	0.39	13	20.0	13	22;18	y	0.19	7	30.5	7	34;27	y	0.35	27	49.5	27	56;43	y	0.31	28	61.5	28	72;51	y	0.24	9	28.0	9	31;25	y	0.40	30	45.5	30	40;51	y	0.19	8	34.0	8	40;28	y	0.20	7	28.0	7	32;24	y	0.45	31	37.5	31	33;42	y	0.23	10	34.0	10	38;30	y	0.31	20	43.5	20	42;45	y	ENSMUSG00000033114.12	Slc35d2	chr13	protein_coding	solute carrier family 35, member D2
known_NIR_4886	chr13	64260815;64268495	64268409;64277000	-	64260815	64277000	cassetteExon	ENSMUST00000222866.2	known	1.00	9.0	0	16;2	0	n	0.78	7.0	2	13;1	2	n	0.67	4.0	2	7;1	2	n	0.94	15.0	1	27;3	1	n	0.73	16.0	6	28;4	6	y	1.00	4.5	0	9;0	0	n	0.89	15.5	2	30;1	2	n	1.00	4.0	0	8;0	0	n	1.00	5.0	0	7;3	0	n	1.00	16.5	0	31;2	0	n	0.87	6.5	1	10;3	1	n	1.00	12.0	0	20;4	0	n	ENSMUSG00000033114.12	Slc35d2	chr13	protein_coding	solute carrier family 35, member D2
known_NIR_4887	chr13	64268495	64277000	-	64268495;64270166	64270133;64277000	ES	ENSMUST00000099441.6	known	0.06	2	32.0	2	31;33	y	0.03	1	35.5	1	40;31	n	0.03	1	33.5	1	36;31	n	0.06	3	43.5	3	52;35	y	0.07	4	49.5	4	51;48	y	0.00	0	42.0	0	47;37	n	0.02	1	59.0	1	59;59	n	0.00	0	31.0	0	30;32	n	0.08	3	34.0	3	34;34	y	0.04	2	54.0	2	58;50	y	0.07	3	38.0	3	40;36	y	0.07	4	56.0	4	58;54	y	ENSMUSG00000033114.12	Slc35d2	chr13	protein_coding	solute carrier family 35, member D2
known_NIR_4888	chr13	64270166	64277000	-	64260815	64277000	A3SS	ENSMUST00000222866.2	known	1.00	33	0	33	0	n	0.94	31	2	31	2	y	0.94	31	2	31	2	y	0.97	35	1	35	1	n	0.89	48	6	48	6	y	1.00	37	0	37	0	n	0.97	59	2	59	2	y	1.00	32	0	32	0	n	1.00	34	0	34	0	n	1.00	50	0	50	0	n	0.97	36	1	36	1	n	1.00	54	0	54	0	n	ENSMUSG00000033114.12	Slc35d2	chr13	protein_coding	solute carrier family 35, member D2
known_NIR_4889	chr13	64274655	64277000	-	64260815	64277000	A3SS	ENSMUST00000222866.2	known	1.00	2	0	2	0	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.80	4	1	4	1	n	0.40	4	6	4	6	y	-	-	-	-	-	-	0.50	2	2	2	2	n	1.00	3	0	3	0	n	1.00	1	0	1	0	n	1.00	5	0	5	0	n	0.80	4	1	4	1	n	1.00	1	0	1	0	n	ENSMUSG00000033114.12	Slc35d2	chr13	protein_coding	solute carrier family 35, member D2
known_NIR_4890	chr13	64293494	64297884	-	64293494	64300203	A5SS	ENSMUST00000152644.9	known	0.22	2	7	2	7	n	0.25	1	3	1	3	n	0.30	3	7	3	7	y	0.33	2	4	2	4	n	0.27	4	11	4	11	y	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.44	4	5	4	5	n	0.22	2	7	2	7	n	0.62	5	3	5	3	n	0.50	6	6	6	6	y	ENSMUSG00000044934.14	Zfp367	chr13	protein_coding	zinc finger protein 367
known_NIR_4891	chr13	64293494	64297884	-	64293494	64300414	A5SS	ENSMUST00000059817.12	known	0.67	2	1	2	1	n	0.33	1	2	1	2	n	0.60	3	2	3	2	n	0.67	2	1	2	1	n	0.50	4	4	4	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	4	0	4	0	n	1.00	2	0	2	0	n	0.83	5	1	5	1	n	0.50	6	6	6	6	y	ENSMUSG00000044934.14	Zfp367	chr13	protein_coding	zinc finger protein 367
known_NIR_4892	chr13	64293494	64300203	-	64293494	64300414	A5SS	ENSMUST00000059817.12	known	0.88	7	1	7	1	n	0.60	3	2	3	2	n	0.78	7	2	7	2	n	0.80	4	1	4	1	n	0.73	11	4	11	4	y	0.80	4	1	4	1	n	0.89	8	1	8	1	n	1.00	6	0	6	0	n	1.00	5	0	5	0	n	1.00	7	0	7	0	n	0.75	3	1	3	1	n	0.50	6	6	6	6	y	ENSMUSG00000044934.14	Zfp367	chr13	protein_coding	zinc finger protein 367
known_NIR_4893	chr13	64310148	64311051	+	64310148	64317828	A3SS	ENSMUST00000221904.2	known	0.01	1	97	1	97	n	0.01	1	93	1	93	n	0.02	1	63	1	63	n	0.02	4	165	4	165	y	0.02	4	169	4	169	y	0.04	2	47	2	47	y	0.01	1	132	1	132	n	0.05	4	74	4	74	y	0.01	1	89	1	89	n	0.03	5	178	5	178	y	0.01	2	138	2	138	y	0.02	4	161	4	161	y	ENSMUSG00000021476.10	Habp4	chr13	protein_coding	hyaluronic acid binding protein 4
known_NIR_4894	chr13	64322659	64323819	+	64322672	64323819	A5SS	ENSMUST00000221904.2	known	0.01	1	145	1	145	n	0.04	5	131	5	131	y	0.04	4	106	4	106	y	0.00	0	210	0	210	n	0.02	4	219	4	219	y	0.01	1	85	1	85	n	0.01	1	181	1	181	n	0.02	2	93	2	93	y	0.02	4	159	4	159	y	0.00	0	248	0	248	n	0.00	0	184	0	184	n	0.01	2	216	2	216	y	ENSMUSG00000021476.10	Habp4	chr13	protein_coding	hyaluronic acid binding protein 4
known_NIR_4895	chr13	64344489;64349262	64349146;64353085	-	64344489	64353085	cassetteExon	ENSMUST00000039318.16	known	0.30	3.5	8	7;0	8	n	0.22	2.0	7	4;0	7	n	0.08	1.0	11	0;2	11	n	0.17	4.0	19	7;1	19	n	0.35	7.5	14	10;5	14	y	0.50	2.0	2	4;0	2	n	0.29	4.0	10	8;0	10	n	0.05	0.5	10	1;0	10	n	0.37	7.0	12	11;3	12	y	0.30	9.0	21	13;5	21	y	0.17	2.0	10	4;0	10	n	0.51	14.5	14	22;7	14	y	ENSMUSG00000033102.16	Cdc14b	chr13	protein_coding	CDC14 cell division cycle 14B
known_NIR_4896	chr13	64344489;64349262	64349146;64356921	-	64344489;64353231	64353085;64356921	MXE	ENSMUST00000039318.16	known	0.43	4.5	6.0	7;2	8;4	y	0.41	4.5	6.5	4;5	7;6	y	0.05	0.5	10.5	0;1	11;10	n	0.38	8.5	14.0	7;10	19;9	y	0.40	10.0	15.0	10;10	14;16	y	0.57	4.0	3.0	4;4	2;4	y	0.34	6.5	12.5	8;5	10;15	y	0.19	2.0	8.5	1;3	10;7	n	0.30	5.5	13.0	11;0	12;14	n	0.27	10.0	27.0	13;7	21;33	y	0.32	4.0	8.5	4;4	10;7	y	0.47	14.5	16.5	22;7	14;19	y	ENSMUSG00000033102.16	Cdc14b	chr13	protein_coding	CDC14 cell division cycle 14B
known_NIR_4897	chr13	64344489;64353397	64353085;64356921	-	64344489;64349262	64349146;64356921	MXE	ENSMUST00000223116.2	known	0.57	6.0	4.5	8;4	7;2	y	0.47	4.0	4.5	7;1	4;5	n	0.92	5.5	0.5	11;0	0;1	n	0.53	9.5	8.5	19;0	7;10	n	0.43	7.5	10.0	14;1	10;10	n	0.20	1.0	4.0	2;0	4;4	n	0.43	5.0	6.5	10;0	8;5	n	0.75	6.0	2.0	10;2	1;3	n	0.56	7.0	5.5	12;2	11;0	n	0.52	11.0	10.0	21;1	13;7	n	0.56	5.0	4.0	10;0	4;4	n	0.38	9.0	14.5	14;4	22;7	y	ENSMUSG00000033102.16	Cdc14b	chr13	protein_coding	CDC14 cell division cycle 14B
known_NIR_4898	chr13	64349262;64353231	64353085;64356921	-	64349262	64356921	cassetteExon	ENSMUST00000221634.2	known	0.50	2.0	2	0;4	2	n	0.38	3.0	5	0;6	5	n	0.86	6.0	1	2;10	1	n	0.33	5.0	10	1;9	10	n	0.51	10.5	10	5;16	10	y	0.33	2.0	4	0;4	4	n	0.60	7.5	5	0;15	5	n	0.54	3.5	3	0;7	3	n	1.00	8.5	0	3;14	0	n	0.73	19.0	7	5;33	7	y	0.47	3.5	4	0;7	4	n	0.65	13.0	7	7;19	7	y	ENSMUSG00000033102.16	Cdc14b	chr13	protein_coding	CDC14 cell division cycle 14B
known_NIR_4899	chr13	64349262;64353397	64353085;64356921	-	64349262	64356921	cassetteExon	ENSMUST00000221634.2	known	0.50	2.0	2	0;4	2	n	0.09	0.5	5	0;1	5	n	0.50	1.0	1	2;0	1	n	0.05	0.5	10	1;0	10	n	0.23	3.0	10	5;1	10	n	0.00	0.0	4	0;0	4	n	0.00	0.0	5	0;0	5	n	0.25	1.0	3	0;2	3	n	1.00	2.5	0	3;2	0	n	0.30	3.0	7	5;1	7	n	0.00	0.0	4	0;0	4	n	0.44	5.5	7	7;4	7	y	ENSMUSG00000033102.16	Cdc14b	chr13	protein_coding	CDC14 cell division cycle 14B
known_NIR_4900	chr13	64395132	64396219	-	64395132	64422405	A5SS	ENSMUST00000221634.2	known	1.00	10	0	10	0	n	1.00	7	0	7	0	n	0.64	7	4	7	4	y	1.00	20	0	20	0	n	1.00	19	0	19	0	n	0.88	7	1	7	1	n	0.85	11	2	11	2	y	1.00	16	0	16	0	n	1.00	12	0	12	0	n	1.00	23	0	23	0	n	0.82	9	2	9	2	y	1.00	25	0	25	0	n	ENSMUSG00000033102.16	Cdc14b	chr13	protein_coding	CDC14 cell division cycle 14B
known_NIR_4901	chr13	64397017	64414256	+	64397017	64414191	A3SS	ENSMUST00000181403.3	known	0.77	10	3	10	3	y	0.27	6	16	6	16	y	0.40	4	6	4	6	y	0.60	26	17	26	17	y	0.44	17	22	17	22	y	0.62	8	5	8	5	y	0.62	21	13	21	13	y	0.60	9	6	9	6	y	0.56	10	8	10	8	y	0.51	20	19	20	19	y	0.51	20	19	20	19	y	0.51	19	18	19	18	y	ENSMUSG00000097101.4	1810034E14Rik	chr13	lncRNA	RIKEN cDNA 1810034E14 gene
known_NIR_4902	chr13	64414363	64415783	+	64414363	64414835	A3SS	ENSMUST00000181403.3	known	0.00	0	37	0	37	n	0.00	0	28	0	28	n	0.00	0	10	0	10	n	0.00	0	43	0	43	n	0.00	0	53	0	53	n	0.00	0	19	0	19	n	0.00	0	39	0	39	n	0.00	0	19	0	19	n	0.00	0	37	0	37	n	0.04	2	53	2	53	y	0.02	1	41	1	41	n	0.04	2	54	2	54	y	ENSMUSG00000097101.4	1810034E14Rik	chr13	lncRNA	RIKEN cDNA 1810034E14 gene
known_NIR_4903	chr13	64414363	64419227	+	64414363	64414835	3pMXE	ENSMUST00000181403.3	known	0.05	2	37	2	37	y	0.00	0	28	0	28	n	0.00	0	10	0	10	n	0.00	0	43	0	43	n	0.00	0	53	0	53	n	0.00	0	19	0	19	n	0.00	0	39	0	39	n	0.00	0	19	0	19	n	0.03	1	37	1	37	n	0.02	1	53	1	53	n	0.00	0	41	0	41	n	0.00	0	54	0	54	n	ENSMUSG00000097101.4	1810034E14Rik	chr13	lncRNA	RIKEN cDNA 1810034E14 gene
known_NIR_4904	chr13	64440042	64456636	-	64423670	64456636	A3SS	ENSMUST00000221118.2	known	0.75	6	2	6	2	n	0.50	2	2	2	2	n	0.86	18	3	18	3	y	0.80	4	1	4	1	n	1.00	8	0	8	0	n	0.75	6	2	6	2	n	1.00	7	0	7	0	n	0.83	5	1	5	1	n	1.00	4	0	4	0	n	0.50	2	2	2	2	n	0.78	7	2	7	2	n	0.71	5	2	5	2	n	ENSMUSG00000021482.11	Prxl2c	chr13	protein_coding	peroxiredoxin like 2C
known_NIR_4905	chr13	64440042	64456636	-	64440042;64445200	64445069;64456636	ES	ENSMUST00000222570.2	known	0.05	6	110.0	6	106;114	y	0.02	2	89.0	2	84;94	y	0.12	18	138.0	18	149;127	y	0.03	4	139.0	4	143;135	y	0.04	8	197.5	8	181;214	y	0.07	6	78.0	6	86;70	y	0.04	7	192.0	7	208;176	y	0.05	5	91.0	5	112;70	y	0.04	4	105.0	4	103;107	y	0.01	2	167.0	2	175;159	y	0.06	7	110.0	7	114;106	y	0.03	5	178.5	5	190;167	y	ENSMUSG00000021482.11	Prxl2c	chr13	protein_coding	peroxiredoxin like 2C
known_NIR_4906	chr13	64445200	64456636	-	64423670	64456636	A3SS	ENSMUST00000221118.2	known	0.98	114	2	114	2	y	0.98	94	2	94	2	y	0.98	127	3	127	3	y	0.99	135	1	135	1	n	1.00	214	0	214	0	n	0.97	70	2	70	2	y	1.00	176	0	176	0	n	0.99	70	1	70	1	n	1.00	107	0	107	0	n	0.99	159	2	159	2	y	0.98	106	2	106	2	y	0.99	167	2	167	2	y	ENSMUSG00000021482.11	Prxl2c	chr13	protein_coding	peroxiredoxin like 2C
known_NIR_4907	chr13	64456741	64460081	-	64456741;64456960	64456907;64460081	ES	ENSMUST00000221118.2	known	0.04	5	120.0	5	129;111	y	0.05	5	99.5	5	113;86	y	0.00	0	190.0	0	209;171	n	0.01	1	166.5	1	176;157	n	0.03	6	224.0	6	240;208	y	0.01	1	85.5	1	92;79	n	0.02	4	157.5	4	163;152	y	0.02	2	102.0	2	106;98	y	0.02	2	126.0	2	136;116	y	0.00	0	218.5	0	225;212	n	0.01	1	127.5	1	129;126	n	0.00	1	208.0	1	220;196	n	ENSMUSG00000021482.11	Prxl2c	chr13	protein_coding	peroxiredoxin like 2C
known_NIR_4908	chr13	64514738	64515674	-	64514906	64515674	A3SS	ENSMUST00000222517.2	known	0.00	1	2832	1	2832	n	0.00	0	2533	0	2533	n	0.00	0	6463	0	6463	n	0.00	0	2883	0	2883	n	0.00	3	5363	3	5363	y	0.00	3	4008	3	4008	y	0.00	0	3654	0	3654	n	0.00	1	2699	1	2699	n	0.00	0	2186	0	2186	n	0.00	3	2805	3	2805	y	0.00	0	1603	0	1603	n	0.00	2	3650	2	3650	y	ENSMUSG00000021477.10	Ctsl	chr13	protein_coding	cathepsin L
known_NIR_4909	chr13	64584417	64584580	+	64584428	64584580	A5SS	ENSMUST00000021939.8	known	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.11	2	17	2	17	y	ENSMUSG00000021483.9	Cdk20	chr13	protein_coding	cyclin-dependent kinase 20
known_NIR_4910	chr13	64584494	64584580	+	64584428	64584580	A5SS	ENSMUST00000021939.8	known	0.07	1	13	1	13	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.13	2	13	2	13	y	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	17	0	17	n	ENSMUSG00000021483.9	Cdk20	chr13	protein_coding	cyclin-dependent kinase 20
known_NIR_4911	chr13	6598265	6599616	+	6598265	6599619	A3SS	ENSMUST00000021611.10	known	0.62	5	3	5	3	n	0.62	5	3	5	3	n	0.44	7	9	7	9	y	0.40	6	9	6	9	y	0.48	12	13	12	13	y	0.50	5	5	5	5	y	0.28	5	13	5	13	y	0.45	5	6	5	6	y	0.46	6	7	6	7	y	0.42	13	18	13	18	y	0.63	12	7	12	7	y	0.41	7	10	7	10	y	ENSMUSG00000021193.11	Pitrm1	chr13	protein_coding	pitrilysin metallepetidase 1
known_NIR_4912	chr13	6603369	6605394	+	6603369	6605390	A3SS	ENSMUST00000021611.10	known	0.00	0	23	0	23	n	0.19	3	13	3	13	y	0.03	1	34	1	34	n	0.00	0	21	0	21	n	0.07	2	27	2	27	y	0.14	4	25	4	25	y	0.00	0	33	0	33	n	0.00	0	16	0	16	n	0.12	2	14	2	14	y	0.00	0	43	0	43	n	0.00	0	24	0	24	n	0.07	2	27	2	27	y	ENSMUSG00000021193.11	Pitrm1	chr13	protein_coding	pitrilysin metallepetidase 1
known_NIR_4913	chr13	67060442	67062691	-	67055247	67062691	A3SS	ENSMUST00000173891.8	known	1.00	81	0	81	0	n	1.00	49	0	49	0	n	0.92	57	5	57	5	y	1.00	58	0	58	0	n	1.00	84	0	84	0	n	1.00	30	0	30	0	n	1.00	94	0	94	0	n	0.96	24	1	24	1	n	1.00	59	0	59	0	n	1.00	78	0	78	0	n	1.00	70	0	70	0	n	0.96	69	3	69	3	y	ENSMUSG00000021519.12	Mterf3	chr13	protein_coding	mitochondrial transcription termination factor 3
known_NIR_4914	chr13	67065232	67070820	-	67065237	67070820	A3SS	ENSMUST00000021991.11	known	0.10	9	78	9	78	y	0.12	10	71	10	71	y	0.09	8	79	8	79	y	0.06	5	72	5	72	y	0.08	9	99	9	99	y	0.13	4	26	4	26	y	0.12	12	92	12	92	y	0.06	3	51	3	51	y	0.16	11	58	11	58	y	0.18	19	85	19	85	y	0.10	9	79	9	79	y	0.16	15	77	15	77	y	ENSMUSG00000021519.12	Mterf3	chr13	protein_coding	mitochondrial transcription termination factor 3
known_NIR_4915	chr13	67065237	67076234	-	67065237;67071009	67070820;67076234	ES	ENSMUST00000021991.11	known	0.04	3	73.5	3	78;69	y	0.03	2	57.0	2	71;43	y	0.00	0	77.0	0	79;75	n	0.03	2	70.0	2	72;68	y	0.00	0	84.0	0	99;69	n	0.00	0	35.5	0	26;45	n	0.01	1	93.5	1	92;95	n	0.02	1	45.5	1	51;40	n	0.00	0	60.0	0	58;62	n	0.03	2	77.5	2	85;70	y	0.00	0	76.5	0	79;74	n	0.01	1	73.0	1	77;69	n	ENSMUSG00000021519.12	Mterf3	chr13	protein_coding	mitochondrial transcription termination factor 3
known_NIR_4916	chr13	67065237	67076234	-	67071009	67076234	A3SS&ES	ENSMUST00000173910.2	known	0.04	3	69	3	69	y	0.04	2	43	2	43	y	0.00	0	75	0	75	n	0.03	2	68	2	68	y	0.00	0	69	0	69	n	0.00	0	45	0	45	n	0.01	1	95	1	95	n	0.02	1	40	1	40	n	0.00	0	62	0	62	n	0.03	2	70	2	70	y	0.00	0	74	0	74	n	0.01	1	69	1	69	n	ENSMUSG00000021519.12	Mterf3	chr13	protein_coding	mitochondrial transcription termination factor 3
known_NIR_4917	chr13	67076351	67077949	-	67076386	67077949	A3SS	ENSMUST00000021991.11	known	0.00	0	62	0	62	n	0.09	6	58	6	58	y	0.05	4	79	4	79	y	0.09	4	43	4	43	y	0.03	2	65	2	65	y	0.09	3	32	3	32	y	0.10	8	71	8	71	y	0.19	6	26	6	26	y	0.10	5	47	5	47	y	0.09	8	83	8	83	y	0.08	5	55	5	55	y	0.07	4	56	4	56	y	ENSMUSG00000021519.12	Mterf3	chr13	protein_coding	mitochondrial transcription termination factor 3
known_NIR_4918	chr13	67078287;67079722	67079670;67080999	-	67078287	67080999	cassetteExon	ENSMUST00000021991.11	known	0.04	1.0	23	2;0	23	n	0.03	1.0	35	1;1	35	n	0.02	1.0	41	2;0	41	n	0.05	1.0	19	1;1	19	n	0.03	1.0	35	2;0	35	n	0.02	0.5	21	1;0	21	n	0.06	2.0	29	2;2	29	y	0.00	0.0	21	0;0	21	n	0.00	0.0	35	0;0	35	n	0.00	0.0	64	0;0	64	n	0.00	0.0	23	0;0	23	n	0.01	0.5	37	0;1	37	n	ENSMUSG00000021519.12	Mterf3	chr13	protein_coding	mitochondrial transcription termination factor 3
known_NIR_4919	chr13	67079371	67080999	-	67078287	67080999	A3SS	ENSMUST00000021991.11	known	0.32	11	23	11	23	y	0.22	10	35	10	35	y	0.25	14	41	14	41	y	0.49	18	19	18	19	y	0.29	14	35	14	35	y	0.43	16	21	16	21	y	0.19	7	29	7	29	y	0.38	13	21	13	21	y	0.17	7	35	7	35	y	0.15	11	64	11	64	y	0.00	0	23	0	23	n	0.12	5	37	5	37	y	ENSMUSG00000021519.12	Mterf3	chr13	protein_coding	mitochondrial transcription termination factor 3
known_NIR_4920	chr13	67081750	67101584	+	67081750;67093432	67093341;67101584	ES	ENSMUST00000021990.4	known	0.00	0	81.5	0	62;101	n	0.00	0	69.0	0	64;74	n	0.00	0	93.0	0	114;72	n	0.00	0	139.0	0	134;144	n	0.00	0	123.0	0	112;134	n	0.00	0	48.5	0	47;50	n	0.00	0	141.0	0	148;134	n	0.00	0	72.0	0	82;62	n	0.00	0	85.0	0	80;90	n	0.01	2	146.5	2	140;153	y	0.00	0	86.0	0	85;87	n	0.00	0	112.0	0	117;107	n	ENSMUSG00000021518.5	Ptdss1	chr13	protein_coding	phosphatidylserine synthase 1
known_NIR_4921	chr13	67081750	67101584	+	67093432	67101584	5pMXE	ENSMUST00000225347.2	known	0.00	0	101	0	101	n	0.00	0	74	0	74	n	0.00	0	72	0	72	n	0.00	0	144	0	144	n	0.00	0	134	0	134	n	0.00	0	50	0	50	n	0.00	0	134	0	134	n	0.00	0	62	0	62	n	0.00	0	90	0	90	n	0.01	2	153	2	153	y	0.00	0	87	0	87	n	0.00	0	107	0	107	n	ENSMUSG00000021518.5	Ptdss1	chr13	protein_coding	phosphatidylserine synthase 1
known_NIR_4922	chr13	67101628	67104505	+	67101628	67104446	A3SS	ENSMUST00000021990.4	known	0.00	0	114	0	114	n	0.00	0	83	0	83	n	0.00	0	97	0	97	n	0.00	0	160	0	160	n	0.00	0	160	0	160	n	0.00	0	62	0	62	n	0.00	0	147	0	147	n	0.00	0	70	0	70	n	0.00	0	89	0	89	n	0.01	2	156	2	156	y	0.01	1	87	1	87	n	0.00	0	105	0	105	n	ENSMUSG00000021518.5	Ptdss1	chr13	protein_coding	phosphatidylserine synthase 1
known_NIR_4923	chr13	67111535;67112272	67112138;67114454	+	67111535	67114454	cassetteExon	ENSMUST00000021990.4	known	0.02	3.0	126	2;4	126	y	0.01	1.0	105	0;2	105	n	0.00	0.0	127	0;0	127	n	0.00	0.0	122	0;0	122	n	0.02	3.0	132	3;3	132	y	0.01	1.0	73	0;2	73	n	0.01	1.5	165	0;3	165	n	0.01	1.0	92	2;0	92	n	0.00	0.0	107	0;0	107	n	0.00	0.0	213	0;0	213	n	0.00	0.5	122	0;1	122	n	0.00	0.0	141	0;0	141	n	ENSMUSG00000021518.5	Ptdss1	chr13	protein_coding	phosphatidylserine synthase 1
known_NIR_4924	chr13	67124875	67125695	+	67124875	67135818	A3SS	ENSMUST00000021990.4	known	0.00	0	95	0	95	n	0.01	1	106	1	106	n	0.00	0	86	0	86	n	0.00	0	115	0	115	n	0.00	0	132	0	132	n	0.00	0	62	0	62	n	0.00	0	148	0	148	n	0.00	0	67	0	67	n	0.00	0	89	0	89	n	0.01	2	132	2	132	y	0.01	1	94	1	94	n	0.00	0	100	0	100	n	ENSMUSG00000021518.5	Ptdss1	chr13	protein_coding	phosphatidylserine synthase 1
known_NIR_4925	chr13	67223023	67245857	-	67223023	67229514	5pMXE	ENSMUST00000109742.11	known	0.83	5	1	5	1	n	1.00	14	0	14	0	n	0.88	7	1	7	1	n	0.80	4	1	4	1	n	0.71	10	4	10	4	y	1.00	4	0	4	0	n	1.00	9	0	9	0	n	1.00	3	0	3	0	n	0.50	2	2	2	2	n	1.00	12	0	12	0	n	1.00	5	0	5	0	n	1.00	5	0	5	0	n	ENSMUSG00000058883.17	Zfp708	chr13	protein_coding	zinc finger protein 708
known_NIR_4926	chr13	67254376	67256513	-	67250845	67256513	A3SS	ENSMUST00000186303.7	known	1.00	11	0	11	0	n	0.92	12	1	12	1	n	1.00	7	0	7	0	n	0.94	17	1	17	1	n	0.89	25	3	25	3	y	0.88	7	1	7	1	n	0.97	28	1	28	1	n	0.93	13	1	13	1	n	0.94	15	1	15	1	n	0.76	16	5	16	5	y	0.84	16	3	16	3	y	0.87	20	3	20	3	y	ENSMUSG00000100235.9	Gm28557	chr13	protein_coding	predicted gene 28557
known_NIR_4927	chr13	67468431	67468856	-	67468431	67468892	A5SS	ENSMUST00000109735.9	known	0.14	1	6	1	6	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.12	2	14	2	14	y	0.00	0	12	0	12	n	0.17	1	5	1	5	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.20	2	8	2	8	y	0.00	0	9	0	9	n	1.00	1	0	1	0	n	0.18	3	14	3	14	y	ENSMUSG00000057842.15	Zfp595	chr13	protein_coding	zinc finger protein 595
known_NIR_4928	chr13	67591056	67591340	-	67579664	67591340	A3SS	ENSMUST00000225778.2	known	0.96	25	1	25	1	n	1.00	11	0	11	0	n	1.00	19	0	19	0	n	0.97	32	1	32	1	n	1.00	31	0	31	0	n	1.00	15	0	15	0	n	1.00	25	0	25	0	n	1.00	20	0	20	0	n	1.00	25	0	25	0	n	0.94	34	2	34	2	y	1.00	16	0	16	0	n	1.00	30	0	30	0	n	ENSMUSG00000069206.15	Zfp874a	chr13	protein_coding	zinc finger protein 874a
known_NIR_4929	chr13	67591453;67595551	67595483;67596940	-	67591453	67596940	cassetteExon	ENSMUST00000225778.2	known	0.14	5.5	33	8;3	33	y	0.10	2.5	22	3;2	22	y	0.05	2.0	41	2;2	41	y	0.13	9.0	59	7;11	59	y	0.07	4.5	59	7;2	59	y	0.08	1.5	17	1;2	17	n	0.10	4.0	36	6;2	36	y	0.06	1.5	24	1;2	24	n	0.01	0.5	37	1;0	37	n	0.02	1.0	48	0;2	48	n	0.03	1.0	28	0;2	28	n	0.07	4.0	50	5;3	50	y	ENSMUSG00000069206.15	Zfp874a	chr13	protein_coding	zinc finger protein 874a
known_NIR_4930	chr13	67629976	67632260	-	67629964	67632260	A3SS	ENSMUST00000019572.9	known	0.00	0	3	0	3	n	0.67	2	1	2	1	n	0.45	5	6	5	6	y	0.33	2	4	2	4	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.60	3	2	3	2	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000059839.10	Zfp874b	chr13	protein_coding	zinc finger protein 874b
known_NIR_4931	chr13	67642848	67648021	-	67642848	67648490	A5SS	ENSMUST00000076123.12	known	0.29	2	5	2	5	n	0.33	3	6	3	6	n	0.33	2	4	2	4	n	0.14	1	6	1	6	n	0.07	1	13	1	13	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.00	0	5	0	5	n	0.29	2	5	2	5	n	0.45	5	6	5	6	y	0.80	4	1	4	1	n	0.25	1	3	1	3	n	ENSMUSG00000071291.11	Zfp58	chr13	protein_coding	zinc finger protein 58
known_NIR_4932	chr13	67642848	67648490	-	67642848	67648530	A5SS	ENSMUST00000171518.8	known	0.83	5	1	5	1	n	1.00	6	0	6	0	n	0.80	4	1	4	1	n	0.86	6	1	6	1	n	0.72	13	5	13	5	y	0.50	1	1	1	1	n	0.80	4	1	4	1	n	0.71	5	2	5	2	n	0.62	5	3	5	3	n	0.67	6	3	6	3	n	1.00	1	0	1	0	n	1.00	3	0	3	0	n	ENSMUSG00000071291.11	Zfp58	chr13	protein_coding	zinc finger protein 58
known_NIR_4933	chr13	67642848;67648036	67648021;67648530	-	67642848	67648530	cassetteExon	ENSMUST00000171518.8	known	0.50	1.0	1	2;0	1	n	1.00	2.0	0	3;1	0	n	0.50	1.0	1	2;0	1	n	0.33	0.5	1	1;0	1	n	0.09	0.5	5	1;0	5	n	0.00	0.0	1	0;0	1	n	0.33	0.5	1	1;0	1	n	0.00	0.0	2	0;0	2	n	0.25	1.0	3	2;0	3	n	0.54	3.5	3	5;2	3	y	1.00	2.0	0	4;0	0	n	1.00	0.5	0	1;0	0	n	ENSMUSG00000071291.11	Zfp58	chr13	protein_coding	zinc finger protein 58
known_NIR_4934	chr13	67821807	67831552	-	67821807	67831522	A5SS	ENSMUST00000137496.10	known	1.00	4	0	4	0	n	0.83	5	1	5	1	n	0.67	4	2	4	2	n	0.67	4	2	4	2	n	0.43	6	8	6	8	y	0.50	1	1	1	1	n	0.67	4	2	4	2	n	0.80	4	1	4	1	n	0.50	2	2	2	2	n	0.56	5	4	5	4	n	0.70	7	3	7	3	y	0.67	8	4	8	4	y	ENSMUSG00000048280.19	Zfp738	chr13	protein_coding	zinc finger protein 738
known_NIR_4935	chr13	67859126	67869566	-	67859126	67877180	A5SS	ENSMUST00000073157.15	known	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.20	2	8	2	8	y	-	-	-	-	-	-	0.20	1	4	1	4	n	0.25	1	3	1	3	n	0.50	3	3	3	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000071281.13	Zfp65	chr13	protein_coding	zinc finger protein 65
known_NIR_4936	chr13	67859126	67872307	-	67859126	67877180	A5SS	ENSMUST00000073157.15	known	0.50	1	1	1	1	n	0.83	5	1	5	1	n	0.00	0	2	0	2	n	0.25	2	6	2	6	n	0.47	7	8	7	8	y	-	-	-	-	-	-	0.20	1	4	1	4	n	0.25	1	3	1	3	n	0.50	3	3	3	3	n	0.43	3	4	3	4	n	-	-	-	-	-	-	1.00	2	0	2	0	n	ENSMUSG00000071281.13	Zfp65	chr13	protein_coding	zinc finger protein 65
known_NIR_4937	chr13	67962015	67970403	+	67962015	67970360	A3SS	ENSMUST00000181391.8	known	0.00	0	5	0	5	n	0.67	2	1	2	1	n	-	-	-	-	-	-	0.62	5	3	5	3	n	0.60	6	4	6	4	y	0.00	0	2	0	2	n	0.75	3	1	3	1	n	0.50	2	2	2	2	n	0.67	2	1	2	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.83	5	1	5	1	n	ENSMUSG00000030446.18	Zfp273	chr13	protein_coding	zinc finger protein 273
known_NIR_4938	chr13	68720819	68725707	-	68720819;68723509	68723137;68725707	ES	ENSMUST00000045827.5	known	0.20	2	8.0	2	7;9	y	0.00	0	8.5	0	11;6	n	0.12	2	15.0	2	14;16	y	0.06	1	14.5	1	8;21	n	0.00	0	15.0	0	4;26	n	0.20	2	8.0	2	4;12	y	0.00	0	11.5	0	9;14	n	0.13	1	6.5	1	4;9	n	0.10	1	9.0	1	4;14	n	0.00	0	11.0	0	9;13	n	0.30	3	7.0	3	6;8	y	0.20	2	8.0	2	8;8	y	ENSMUSG00000034617.8	Mtrr	chr13	protein_coding	5-methyltetrahydrofolate-homocysteine methyltransferase reductase
known_NIR_4939	chr13	68720819	68725707	-	68723509	68725707	3pMXE	ENSMUST00000222107.2	known	0.18	2	9	2	9	y	0.00	0	6	0	6	n	0.11	2	16	2	16	y	0.05	1	21	1	21	n	0.00	0	26	0	26	n	0.14	2	12	2	12	y	0.00	0	14	0	14	n	0.10	1	9	1	9	n	0.07	1	14	1	14	n	0.00	0	13	0	13	n	0.27	3	8	3	8	y	0.20	2	8	2	8	y	ENSMUSG00000034617.8	Mtrr	chr13	protein_coding	5-methyltetrahydrofolate-homocysteine methyltransferase reductase
known_NIR_4940	chr13	68730469	68731658	+	68730469	68732255	A3SS	ENSMUST00000222068.2	known	0.67	2	1	2	1	n	0.91	10	1	10	1	n	0.82	9	2	9	2	y	0.67	4	2	4	2	n	0.75	3	1	3	1	n	-	-	-	-	-	-	0.73	8	3	8	3	y	0.60	3	2	3	2	n	0.00	0	1	0	1	n	0.62	8	5	8	5	y	1.00	4	0	4	0	n	0.70	7	3	7	3	y	ENSMUSG00000021532.12	Fastkd3	chr13	protein_coding	FAST kinase domains 3
known_NIR_4941	chr13	68733121	68733297	+	68732475	68733297	A5SS	ENSMUST00000222068.2	known	0.60	9	6	9	6	y	0.89	8	1	8	1	n	0.85	11	2	11	2	y	0.94	15	1	15	1	n	0.62	5	3	5	3	n	1.00	6	0	6	0	n	0.82	14	3	14	3	y	0.33	1	2	1	2	n	0.60	6	4	6	4	y	0.59	10	7	10	7	y	0.22	2	7	2	7	n	0.56	5	4	5	4	n	ENSMUSG00000021532.12	Fastkd3	chr13	protein_coding	FAST kinase domains 3
known_NIR_4942	chr13	68733382	68735840	+	68733382	68735779	A3SS	ENSMUST00000222068.2	known	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.18	2	9	2	9	y	0.00	0	14	0	14	n	0.00	0	18	0	18	n	0.33	2	4	2	4	n	0.50	3	3	3	3	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.00	0	19	0	19	n	ENSMUSG00000021532.12	Fastkd3	chr13	protein_coding	FAST kinase domains 3
known_NIR_4943	chr13	68735953	68737342	+	68735953	68737439	A3SS	ENSMUST00000222068.2	known	0.42	8	11	8	11	y	0.36	5	9	5	9	y	0.25	3	9	3	9	y	0.20	4	16	4	16	y	0.48	13	14	13	14	y	0.50	4	4	4	4	n	0.35	9	17	9	17	y	0.62	5	3	5	3	n	0.36	5	9	5	9	y	0.55	12	10	12	10	y	0.45	10	12	10	12	y	0.33	5	10	5	10	y	ENSMUSG00000021532.12	Fastkd3	chr13	protein_coding	FAST kinase domains 3
known_NIR_4944	chr13	69664022	69680455	-	69664022	69681607	A5SS	ENSMUST00000198607.5	known	0.29	4	10	4	10	y	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.00	0	28	0	28	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	19	0	19	n	0.05	1	19	1	19	n	0.00	0	19	0	19	n	ENSMUSG00000034575.14	Tent4a	chr13	protein_coding	terminal nucleotidyltransferase 4A
known_NIR_4945	chr13	69734854	69742921	-	69734854	69743035	A5SS	ENSMUST00000091514.6	known	0.30	20	47	20	47	y	0.30	15	35	15	35	y	0.60	9	6	9	6	y	0.23	27	92	27	92	y	0.29	22	55	22	55	y	0.29	5	12	5	12	y	0.36	28	49	28	49	y	0.19	4	17	4	17	y	0.35	33	62	33	62	y	0.25	38	117	38	117	y	0.26	38	111	38	111	y	0.30	38	90	38	90	y	ENSMUSG00000021594.12	Srd5a1	chr13	protein_coding	steroid 5 alpha-reductase 1
known_NIR_4946	chr13	69742860	69743035	-	69734854	69743035	A3SS	ENSMUST00000091514.6	known	0.08	4	47	4	47	y	0.08	3	35	3	35	y	0.33	3	6	3	6	n	0.04	4	92	4	92	y	0.08	5	55	5	55	y	0.08	1	12	1	12	n	0.02	1	49	1	49	n	0.00	0	17	0	17	n	0.03	2	62	2	62	y	0.06	7	117	7	117	y	0.08	10	111	10	111	y	0.11	11	90	11	90	y	ENSMUSG00000021594.12	Srd5a1	chr13	protein_coding	steroid 5 alpha-reductase 1
known_NIR_4947	chr13	70749355	70750298	-	70749318	70750298	A3SS	ENSMUST00000220637.2	known	0.83	15	3	15	3	y	1.00	16	0	16	0	n	1.00	22	0	22	0	n	1.00	13	0	13	0	n	0.83	25	5	25	5	y	1.00	17	0	17	0	n	0.92	23	2	23	2	y	1.00	17	0	17	0	n	1.00	14	0	14	0	n	1.00	14	0	14	0	n	1.00	27	0	27	0	n	0.92	23	2	23	2	y	ENSMUSG00000034525.8	Ice1	chr13	protein_coding	interactor of little elongation complex ELL subunit 1
known_NIR_4948	chr13	73475588	73476397	-	73475588	73476458	A5SS	ENSMUST00000223293.2	known	0.09	67	663	67	663	y	0.06	53	781	53	781	y	0.06	41	696	41	696	y	0.07	53	698	53	698	y	0.06	46	772	46	772	y	0.06	26	432	26	432	y	0.08	83	916	83	916	y	0.04	16	435	16	435	y	0.09	64	681	64	681	y	0.07	72	963	72	963	y	0.09	84	831	84	831	y	0.09	76	776	76	776	y	ENSMUSG00000021606.9	Ndufs6	chr13	protein_coding	NADH:ubiquinone oxidoreductase core subunit S6
known_NIR_4949	chr13	73479212	73479479	+	73479210	73479479	A5SS	ENSMUST00000221730.2	known	0.02	3	122	3	122	y	0.01	1	116	1	116	n	0.08	9	106	9	106	y	0.06	8	117	8	117	y	0.04	7	169	7	169	y	0.00	0	75	0	75	n	0.03	4	125	4	125	y	0.03	2	56	2	56	y	0.07	8	105	8	105	y	0.04	7	154	7	154	y	0.06	8	127	8	127	y	0.02	3	137	3	137	y	ENSMUSG00000021607.10	Mrpl36	chr13	protein_coding	mitochondrial ribosomal protein L36
known_NIR_4950	chr13	73776600	73782271	+	73776793	73782271	A5SS	ENSMUST00000022104.9	known	0.30	3	7	3	7	y	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.18	2	9	2	9	y	0.10	1	9	1	9	n	0.33	1	2	1	2	n	0.25	1	3	1	3	n	0.25	2	6	2	6	n	0.33	4	8	4	8	y	0.20	2	8	2	8	y	0.33	2	4	2	4	n	0.50	4	4	4	4	n	ENSMUSG00000021611.10	Tert	chr13	protein_coding	telomerase reverse transcriptase
known_NIR_4951	chr13	73912009	73932638	+	73881456	73932638	A5SS	ENSMUST00000222742.2	known	0.88	37	5	37	5	y	0.82	23	5	23	5	y	0.94	33	2	33	2	y	0.93	54	4	54	4	y	0.91	50	5	50	5	y	0.81	13	3	13	3	y	0.98	42	1	42	1	n	0.94	29	2	29	2	y	1.00	26	0	26	0	n	0.90	53	6	53	6	y	0.87	27	4	27	4	y	0.81	30	7	30	7	y	ENSMUSG00000017756.10	Slc12a7	chr13	protein_coding	solute carrier family 12, member 7
known_NIR_4952	chr13	73912661	73932638	+	73881456	73932638	A5SS	ENSMUST00000222742.2	known	0.86	32	5	32	5	y	0.77	17	5	17	5	y	0.78	7	2	7	2	n	0.91	41	4	41	4	y	0.88	35	5	35	5	y	0.73	8	3	8	3	y	0.97	32	1	32	1	n	0.78	7	2	7	2	n	1.00	44	0	44	0	n	0.87	40	6	40	6	y	0.89	34	4	34	4	y	0.78	25	7	25	7	y	ENSMUSG00000017756.10	Slc12a7	chr13	protein_coding	solute carrier family 12, member 7
known_NIR_4953	chr13	73912661	73932638	+	73912009	73932638	A5SS	ENSMUST00000017900.9	known	0.46	32	37	32	37	y	0.42	17	23	17	23	y	0.17	7	33	7	33	y	0.43	41	54	41	54	y	0.41	35	50	35	50	y	0.38	8	13	8	13	y	0.43	32	42	32	42	y	0.19	7	29	7	29	y	0.63	44	26	44	26	y	0.43	40	53	40	53	y	0.56	34	27	34	27	y	0.45	25	30	25	30	y	ENSMUSG00000017756.10	Slc12a7	chr13	protein_coding	solute carrier family 12, member 7
known_NIR_4954	chr13	73943384	73943723	+	73943384	73943604	A3SS	ENSMUST00000222742.2	known	1.00	75	0	75	0	n	0.95	75	4	75	4	y	1.00	58	0	58	0	n	0.97	106	3	106	3	y	0.99	114	1	114	1	n	1.00	28	0	28	0	n	1.00	106	0	106	0	n	0.96	51	2	51	2	y	0.99	107	1	107	1	n	0.98	145	3	145	3	y	1.00	98	0	98	0	n	0.99	77	1	77	1	n	ENSMUSG00000017756.10	Slc12a7	chr13	protein_coding	solute carrier family 12, member 7
known_NIR_4955	chr13	73958203	73960322	+	73958203	73961658	A3SS	ENSMUST00000017900.9	known	0.03	5	164	5	164	y	0.01	1	125	1	125	n	0.01	1	82	1	82	n	0.00	0	146	0	146	n	0.02	5	204	5	204	y	0.02	1	51	1	51	n	0.00	0	171	0	171	n	0.01	1	78	1	78	n	0.00	0	135	0	135	n	0.00	0	265	0	265	n	0.01	1	173	1	173	n	0.02	2	113	2	113	y	ENSMUSG00000017756.10	Slc12a7	chr13	protein_coding	solute carrier family 12, member 7
known_NIR_4956	chr13	74086354	74086553	+	74086064	74086553	A5SS	ENSMUST00000222399.2	known	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.14	2	12	2	12	y	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.12	1	7	1	7	n	0.00	0	12	0	12	n	0.17	1	5	1	5	n	ENSMUSG00000057649.7	Brd9	chr13	protein_coding	bromodomain containing 9
known_NIR_4957	chr13	74090173	74090750	+	74090173	74090810	A3SS	ENSMUST00000099384.4	known	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.14	1	6	1	6	n	0.00	0	11	0	11	n	0.42	5	7	5	7	y	0.00	0	3	0	3	n	0.11	2	17	2	17	y	0.29	2	5	2	5	n	0.00	0	9	0	9	n	0.11	2	16	2	16	y	0.40	4	6	4	6	y	0.24	5	16	5	16	y	ENSMUSG00000057649.7	Brd9	chr13	protein_coding	bromodomain containing 9
known_NIR_4958	chr13	74090173	74090810	+	74090173	74090813	A3SS	ENSMUST00000222399.2	known	0.73	11	4	11	4	y	0.78	14	4	14	4	y	1.00	6	0	6	0	n	0.85	11	2	11	2	y	0.64	7	4	7	4	y	0.75	3	1	3	1	n	0.74	17	6	17	6	y	0.83	5	1	5	1	n	0.69	9	4	9	4	y	0.80	16	4	16	4	y	0.75	6	2	6	2	n	0.80	16	4	16	4	y	ENSMUSG00000057649.7	Brd9	chr13	protein_coding	bromodomain containing 9
known_NIR_4959	chr13	74157628;74169569	74169258;74178869	+	74157628	74178869	cassetteExon	ENSMUST00000140217.8	known	1.00	3.5	0	3;4	0	n	1.00	1.0	0	1;1	0	n	1.00	2.0	0	1;3	0	n	0.78	3.5	1	1;6	1	n	0.87	6.5	1	1;12	1	n	1.00	0.5	0	1;0	0	n	1.00	3.5	0	2;5	0	n	-	-	-	-	-	-	1.00	3.5	0	2;5	0	n	1.00	11.0	0	9;13	0	n	1.00	9.0	0	3;15	0	n	0.65	5.5	3	3;8	3	y	ENSMUSG00000021573.16	Tppp	chr13	protein_coding	tubulin polymerization promoting protein
known_NIR_4960	chr13	74355216	74355942	-	74355216	74356777	A5SS	ENSMUST00000035934.7	known	0.50	5	5	5	5	y	0.19	3	13	3	13	y	0.36	9	16	9	16	y	0.30	8	19	8	19	y	0.27	7	19	7	19	y	0.42	5	7	5	7	y	0.22	4	14	4	14	y	0.10	1	9	1	9	n	0.00	0	13	0	13	n	0.29	6	15	6	15	y	0.08	1	12	1	12	n	0.12	2	14	2	14	y	ENSMUSG00000034152.7	Exoc3	chr13	protein_coding	exocyst complex component 3
known_NIR_4961	chr13	74453769	74457809	-	74453769	74457803	A5SS	ENSMUST00000022060.7	known	0.21	104	396	104	396	y	0.29	152	372	152	372	y	0.24	126	389	126	389	y	0.27	132	354	132	354	y	0.25	140	421	140	421	y	0.31	77	173	77	173	y	0.22	135	471	135	471	y	0.25	68	200	68	200	y	0.24	106	340	106	340	y	0.22	158	548	158	548	y	0.21	98	377	98	377	y	0.24	133	431	133	431	y	ENSMUSG00000021576.7	Pdcd6	chr13	protein_coding	programmed cell death 6
known_NIR_4962	chr13	74493056;74497148	74497062;74498265	-	74493056	74498265	cassetteExon	ENSMUST00000022062.8	known	0.01	2.0	275	2;2	275	y	0.00	0.5	161	0;1	161	n	0.00	0.5	363	1;0	363	n	0.00	0.0	499	0;0	499	n	0.00	0.5	417	1;0	417	n	0.00	0.0	192	0;0	192	n	0.01	2.5	447	4;1	447	n	0.00	0.0	259	0;0	259	n	0.00	0.0	363	0;0	363	n	0.00	0.0	577	0;0	577	n	0.00	0.5	321	1;0	321	n	0.01	2.5	464	3;2	464	y	ENSMUSG00000021577.15	Sdha	chr13	protein_coding	succinate dehydrogenase complex, subunit A, flavoprotein (Fp)
known_NIR_4963	chr13	74498527	74500981	+	74498527	74500975	A3SS	ENSMUST00000022063.14	known	0.00	0	26	0	26	n	0.00	0	11	0	11	n	0.05	3	53	3	53	y	0.00	0	23	0	23	n	0.00	0	38	0	38	n	0.00	0	32	0	32	n	0.00	0	34	0	34	n	0.00	0	31	0	31	n	0.00	0	23	0	23	n	0.00	0	37	0	37	n	0.13	3	20	3	20	y	0.00	0	32	0	32	n	ENSMUSG00000021578.18	Ccdc127	chr13	protein_coding	coiled-coil domain containing 127
known_NIR_4964	chr13	74498527	74504575	+	74498527;74501105	74500975;74504575	ES	ENSMUST00000022063.14	known	0.00	0	36.0	0	26;46	n	0.00	0	22.5	0	11;34	n	0.02	2	84.0	2	53;115	y	0.00	0	34.0	0	23;45	n	0.00	0	59.5	0	38;81	n	0.00	0	47.5	0	32;63	n	0.00	0	46.5	0	34;59	n	0.02	1	47.5	1	31;64	n	0.00	0	32.5	0	23;42	n	0.00	0	38.0	0	37;39	n	0.00	0	34.0	0	20;48	n	0.00	0	39.0	0	32;46	n	ENSMUSG00000021578.18	Ccdc127	chr13	protein_coding	coiled-coil domain containing 127
known_NIR_4965	chr13	74498527;74501105	74500981;74504575	+	74498527	74504575	cassetteExon	ENSMUST00000223491.2	known	1.00	23.0	0	0;46	0	n	1.00	17.0	0	0;34	0	n	0.97	59.0	2	3;115	2	y	1.00	22.5	0	0;45	0	n	1.00	40.5	0	0;81	0	n	1.00	31.5	0	0;63	0	n	1.00	29.5	0	0;59	0	n	0.97	32.0	1	0;64	1	n	1.00	21.0	0	0;42	0	n	1.00	19.5	0	0;39	0	n	1.00	25.5	0	3;48	0	n	1.00	23.0	0	0;46	0	n	ENSMUSG00000021578.18	Ccdc127	chr13	protein_coding	coiled-coil domain containing 127
known_NIR_4966	chr13	74501105	74508724	+	74501105	74504575	A3SS	ENSMUST00000022063.14	known	0.00	0	46	0	46	n	0.03	1	34	1	34	n	0.01	1	115	1	115	n	0.04	2	45	2	45	y	0.05	4	81	4	81	y	0.02	1	63	1	63	n	0.02	1	59	1	59	n	0.00	0	64	0	64	n	0.02	1	42	1	42	n	0.03	1	39	1	39	n	0.00	0	48	0	48	n	0.08	4	46	4	46	y	ENSMUSG00000021578.18	Ccdc127	chr13	protein_coding	coiled-coil domain containing 127
known_NIR_4967	chr13	74501105	74508724	+	74501105;74504936	74504575;74508724	ES	ENSMUST00000160021.8	known	0.00	0	25.0	0	46;4	n	0.05	1	19.0	1	34;4	n	0.02	1	61.0	1	115;7	n	0.07	2	27.0	2	45;9	y	0.08	4	45.5	4	81;10	y	0.03	1	33.5	1	63;4	n	0.03	1	32.5	1	59;6	n	0.00	0	34.0	0	64;4	n	0.04	1	23.0	1	42;4	n	0.04	1	25.5	1	39;12	n	0.00	0	25.5	0	48;3	n	0.13	4	26.0	4	46;6	y	ENSMUSG00000021578.18	Ccdc127	chr13	protein_coding	coiled-coil domain containing 127
known_NIR_4968	chr13	74504936;74507945	74507810;74508724	+	74504936	74508724	cassetteExon	ENSMUST00000160021.8	known	0.00	0.0	4	0;0	4	n	0.00	0.0	4	0;0	4	n	0.12	1.0	7	0;2	7	n	0.00	0.0	9	0;0	9	n	0.09	1.0	10	2;0	10	n	0.00	0.0	4	0;0	4	n	0.00	0.0	6	0;0	6	n	0.11	0.5	4	0;1	4	n	0.00	0.0	4	0;0	4	n	0.17	2.5	12	2;3	12	y	0.00	0.0	3	0;0	3	n	0.00	0.0	6	0;0	6	n	ENSMUSG00000021578.18	Ccdc127	chr13	protein_coding	coiled-coil domain containing 127
known_NIR_4969	chr13	74598481	74610701	-	74586105	74610701	A3SS	ENSMUST00000099446.5	known	1.00	2	0	2	0	n	1.00	4	0	4	0	n	0.89	8	1	8	1	n	0.88	7	1	7	1	n	0.86	6	1	6	1	n	1.00	8	0	8	0	n	0.80	4	1	4	1	n	0.93	13	1	13	1	n	1.00	4	0	4	0	n	0.64	7	4	7	4	y	1.00	6	0	6	0	n	0.88	7	1	7	1	n	ENSMUSG00000112964.2	E430024I08Rik	chr13	lncRNA	RIKEN cDNA E430024I08 gene
known_NIR_4970	chr13	74598530	74610701	-	74598481	74610701	A3SS	ENSMUST00000222455.2	known	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.20	2	8	2	8	y	0.12	1	7	1	7	n	0.40	4	6	4	6	y	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.13	2	13	2	13	y	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.00	0	6	0	6	n	0.36	4	7	4	7	y	ENSMUSG00000112964.2	E430024I08Rik	chr13	lncRNA	RIKEN cDNA E430024I08 gene
known_NIR_4971	chr13	74631062;74632141	74632018;74641969	-	74631062	74641969	cassetteExon	ENSMUST00000202645.4	known	0.83	19.0	4	10;28	4	y	0.71	14.5	6	11;18	6	y	0.71	39.5	16	15;64	16	y	0.56	21.5	17	6;37	17	y	0.71	36.0	15	28;44	15	y	0.70	16.0	7	9;23	7	y	0.76	35.0	11	20;50	11	y	0.78	25.0	7	9;41	7	y	0.67	22.5	11	14;31	11	y	0.68	31.5	15	14;49	15	y	0.62	19.5	12	8;31	12	y	0.68	19.5	9	9;30	9	y	ENSMUSG00000069208.10	Zfp825	chr13	protein_coding	zinc finger protein 825
known_NIR_4972	chr13	74758445	74760843	-	74758445;74759440	74759383;74760843	ES	ENSMUST00000222254.2	known	0.75	3	1.0	3	2;0	n	0.70	7	3.0	7	3;3	y	0.86	3	0.5	3	1;0	n	0.70	8	3.5	8	5;2	y	0.88	14	2.0	14	3;1	n	0.60	3	2.0	3	0;4	n	0.71	11	4.5	11	5;4	y	0.86	3	0.5	3	1;0	n	0.71	6	2.5	6	2;3	y	0.97	19	0.5	19	1;0	n	0.57	2	1.5	2	2;1	n	0.75	6	2.0	6	4;0	n	ENSMUSG00000113204.2	Gm46430	chr13	lncRNA	predicted gene, 46430
known_NIR_4973	chr13	74758445	74760843	-	74758445;74759506	74759383;74760843	ES	ENSMUST00000220478.2	known	0.38	3	5.0	3	2;8	y	0.78	7	2.0	7	3;1	n	0.86	3	0.5	3	1;0	n	0.73	8	3.0	8	5;1	n	0.82	14	3.0	14	3;3	y	1.00	3	0.0	3	0;0	n	0.69	11	5.0	11	5;5	y	0.75	3	1.0	3	1;1	n	0.75	6	2.0	6	2;2	y	0.90	19	2.0	19	1;3	n	0.57	2	1.5	2	2;1	n	0.75	6	2.0	6	4;0	n	ENSMUSG00000113204.2	Gm46430	chr13	lncRNA	predicted gene, 46430
known_NIR_4974	chr13	74758445	74765321	-	74758445;74761067	74760843;74765321	ES	ENSMUST00000222003.2	known	0.00	0	5.0	0	3;7	n	0.00	0	6.0	0	7;5	n	0.00	0	6.5	0	3;10	n	0.00	0	8.0	0	8;8	n	0.00	0	13.0	0	14;12	n	0.00	0	6.5	0	3;10	n	0.15	2	11.0	2	11;11	y	0.00	0	2.0	0	3;1	n	0.00	0	7.0	0	6;8	n	0.00	0	19.0	0	19;19	n	0.15	1	5.5	1	2;9	n	0.10	1	9.0	1	6;12	n	ENSMUSG00000113204.2	Gm46430	chr13	lncRNA	predicted gene, 46430
known_NIR_4975	chr13	74758445	74765321	-	74761067	74765321	3pMXE	ENSMUST00000222064.2	known	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.15	2	11	2	11	y	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	19	0	19	n	0.10	1	9	1	9	n	0.08	1	12	1	12	n	ENSMUSG00000113204.2	Gm46430	chr13	lncRNA	predicted gene, 46430
known_NIR_4976	chr13	74788056	74794290	+	74788012	74794290	A5SS	ENSMUST00000169114.3	known	0.00	0	26	0	26	n	0.00	0	10	0	10	n	0.00	0	32	0	32	n	0.04	2	46	2	46	y	0.10	4	36	4	36	y	0.00	0	16	0	16	n	0.06	2	32	2	32	y	0.00	0	15	0	15	n	0.05	2	35	2	35	y	0.06	3	50	3	50	y	0.23	6	20	6	20	y	0.04	2	51	2	51	y	ENSMUSG00000021583.8	Erap1	chr13	protein_coding	endoplasmic reticulum aminopeptidase 1
known_NIR_4977	chr13	74852321	74861765	-	74852324	74861765	A3SS	ENSMUST00000222588.2	known	0.30	21	48	21	48	y	0.20	11	44	11	44	y	0.15	22	125	22	125	y	0.18	20	89	20	89	y	0.27	30	83	30	83	y	0.30	21	50	21	50	y	0.34	35	67	35	67	y	0.23	14	46	14	46	y	0.31	21	47	21	47	y	0.35	35	66	35	66	y	0.27	21	57	21	57	y	0.22	20	72	20	72	y	ENSMUSG00000021585.11	Cast	chr13	protein_coding	calpastatin
known_NIR_4978	chr13	74896362;74896980	74896924;74902430	-	74896362	74902430	cassetteExon	ENSMUST00000222588.2	known	0.05	2.0	35	3;1	35	n	0.03	1.0	28	1;1	28	n	0.08	7.0	82	5;9	82	y	0.01	1.0	69	1;1	69	n	0.03	2.0	63	2;2	63	y	0.07	4.0	53	4;4	53	y	0.05	3.0	63	3;3	63	y	0.10	5.0	46	4;6	46	y	0.03	1.5	43	2;1	43	n	0.04	3.5	82	3;4	82	y	0.02	1.0	40	1;1	40	n	0.05	3.0	58	1;5	58	n	ENSMUSG00000021585.11	Cast	chr13	protein_coding	calpastatin
known_NIR_4979	chr13	74902489	74928622	-	74902489	74918665	5pMXE	ENSMUST00000222588.2	known	0.46	16	19	16	19	y	0.36	8	14	8	14	y	0.35	28	51	28	51	y	0.45	23	28	23	28	y	0.58	41	30	41	30	y	0.25	13	40	13	40	y	0.36	20	36	20	36	y	0.29	12	30	12	30	y	0.55	21	17	21	17	y	0.42	24	33	24	33	y	0.51	20	19	20	19	y	0.45	23	28	23	28	y	ENSMUSG00000021585.11	Cast	chr13	protein_coding	calpastatin
known_NIR_4980	chr13	74946837	74955938	-	74946837	74956555	A5SS	ENSMUST00000223206.2	known	0.22	2	7	2	7	n	0.22	2	7	2	7	n	0.10	2	19	2	19	y	0.42	11	15	11	15	y	0.32	12	25	12	25	y	0.00	0	9	0	9	n	0.20	4	16	4	16	y	0.30	3	7	3	7	y	0.29	2	5	2	5	n	0.30	10	23	10	23	y	0.53	9	8	9	8	y	0.33	7	14	7	14	y	ENSMUSG00000021585.11	Cast	chr13	protein_coding	calpastatin
known_NIR_4981	chr13	75894532	75904394	+	75894532	75919601	A3SS	ENSMUST00000222194.2	known	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.13	2	13	2	13	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	n	1.00	1	0	1	0	n	1.00	5	0	5	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	n	ENSMUSG00000001542.8	Ell2	chr13	protein_coding	elongation factor for RNA polymerase II 2
known_NIR_4982	chr13	75894532	75904394	+	75894532;75898207	75898044;75904394	ES	ENSMUST00000001583.8	known	0.00	0	94.0	0	88;100	n	0.02	1	57.0	1	44;70	n	0.00	0	187.5	0	180;195	n	0.01	1	133.0	1	123;143	n	0.01	2	145.0	2	123;167	y	0.01	1	98.0	1	75;121	n	0.00	0	140.5	0	128;153	n	0.03	3	89.0	3	83;95	y	0.01	1	79.0	1	70;88	n	0.04	5	126.0	5	97;155	y	0.01	1	70.0	1	61;79	n	0.02	2	111.0	2	108;114	y	ENSMUSG00000001542.8	Ell2	chr13	protein_coding	elongation factor for RNA polymerase II 2
known_NIR_4983	chr13	75894532	75919601	+	75894532	75898044	A3SS&ES	ENSMUST00000001583.8	known	0.00	0	88	0	88	n	0.00	0	44	0	44	n	0.00	0	180	0	180	n	0.00	0	123	0	123	n	0.10	13	123	13	123	y	0.00	0	75	0	75	n	0.00	0	128	0	128	n	0.00	0	83	0	83	n	0.00	0	70	0	70	n	0.00	0	97	0	97	n	0.00	0	61	0	61	n	0.00	0	108	0	108	n	ENSMUSG00000001542.8	Ell2	chr13	protein_coding	elongation factor for RNA polymerase II 2
known_NIR_4984	chr13	76156405	76166134	-	76156405	76165640	A5SS	ENSMUST00000050997.2	known	0.40	8	12	8	12	y	0.50	10	10	10	10	y	0.53	9	8	9	8	y	0.65	22	12	22	12	y	0.53	17	15	17	15	y	0.30	7	16	7	16	y	0.60	32	21	32	21	y	0.36	9	16	9	16	y	0.42	10	14	10	14	y	0.51	24	23	24	23	y	0.60	18	12	18	12	y	0.52	16	15	16	15	y	ENSMUSG00000043190.15	Rfesd	chr13	protein_coding	Rieske (Fe-S) domain containing
known_NIR_4985	chr13	76156405	76166777	-	76156405	76165640	5pMXE	ENSMUST00000050997.2	known	0.33	6	12	6	12	y	0.44	8	10	8	10	y	0.20	2	8	2	8	y	0.29	5	12	5	12	y	0.32	7	15	7	15	y	0.30	7	16	7	16	y	0.30	9	21	9	21	y	0.06	1	16	1	16	n	0.18	3	14	3	14	y	0.08	2	23	2	23	y	0.29	5	12	5	12	y	0.25	5	15	5	15	y	ENSMUSG00000043190.15	Rfesd	chr13	protein_coding	Rieske (Fe-S) domain containing
known_NIR_4986	chr13	76156405	76166777	-	76156405	76166134	A5SS	ENSMUST00000179078.9	known	0.43	6	8	6	8	y	0.44	8	10	8	10	y	0.18	2	9	2	9	y	0.19	5	22	5	22	y	0.29	7	17	7	17	y	0.50	7	7	7	7	y	0.22	9	32	9	32	y	0.10	1	9	1	9	n	0.23	3	10	3	10	y	0.08	2	24	2	24	y	0.22	5	18	5	18	y	0.24	5	16	5	16	y	ENSMUSG00000043190.15	Rfesd	chr13	protein_coding	Rieske (Fe-S) domain containing
known_NIR_4987	chr13	76237468	76239777	-	76223170	76239777	A3SS	ENSMUST00000239063.2	known	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.10	1	9	1	9	n	0.17	3	15	3	15	y	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.11	1	8	1	8	n	0.00	0	4	0	4	n	0.06	1	17	1	17	n	ENSMUSG00000021592.19	Arsk	chr13	protein_coding	arylsulfatase K
known_NIR_4988	chr13	76239936	76246493	-	76239936;76242136	76242007;76246493	ES	ENSMUST00000239063.2	known	0.12	1	7.5	1	6;9	n	0.00	0	5.0	0	6;4	n	0.09	1	10.5	1	13;8	n	0.00	0	11.5	0	11;12	n	0.13	2	13.5	2	14;13	y	0.00	0	7.0	0	6;8	n	0.00	0	10.0	0	8;12	n	0.00	0	6.5	0	4;9	n	0.00	0	9.5	0	15;4	n	0.20	3	12.0	3	13;11	y	0.00	0	4.0	0	4;4	n	0.00	0	18.0	0	15;21	n	ENSMUSG00000021592.19	Arsk	chr13	protein_coding	arylsulfatase K
known_NIR_4989	chr13	77856972	77907547	+	77856972;77891005	77890882;77907547	ES	ENSMUST00000163257.9	known	1.00	10	0.0	10	0;0	n	0.67	2	1.0	2	1;1	n	0.70	7	3.0	7	3;3	y	0.95	18	1.0	18	1;1	n	0.91	16	1.5	16	2;1	n	0.80	4	1.0	4	0;2	n	0.88	14	2.0	14	2;2	y	1.00	3	0.0	3	0;0	n	1.00	14	0.0	14	0;0	n	1.00	13	0.0	13	0;0	n	0.91	10	1.0	10	1;1	n	0.87	13	2.0	13	2;2	y	ENSMUSG00000064138.15	Fam172a	chr13	protein_coding	family with sequence similarity 172, member A
known_NIR_4990	chr13	81039343	81039607	+	81039343	81039569	A3SS	ENSMUST00000159690.8	known	0.88	38	5	38	5	y	1.00	25	0	25	0	n	0.89	31	4	31	4	y	0.97	115	4	115	4	y	0.94	121	8	121	8	y	0.86	25	4	25	4	y	0.93	127	10	127	10	y	0.91	64	6	64	6	y	0.94	50	3	50	3	y	0.87	95	14	95	14	y	0.90	121	13	121	13	y	0.92	68	6	68	6	y	ENSMUSG00000074794.11	Arrdc3	chr13	protein_coding	arrestin domain containing 3
known_NIR_4991	chr13	81806055	81813128	+	81806055	81813124	A3SS	ENSMUST00000224300.2	known	0.17	4	19	4	19	y	0.12	2	15	2	15	y	0.08	6	69	6	69	y	0.11	4	33	4	33	y	0.07	4	53	4	53	y	0.20	7	28	7	28	y	0.12	5	36	5	36	y	0.13	4	27	4	27	y	0.08	2	23	2	23	y	0.08	3	33	3	33	y	0.00	0	22	0	22	n	0.05	2	39	2	39	y	ENSMUSG00000035840.8	Lysmd3	chr13	protein_coding	LysM, putative peptidoglycan-binding, domain containing 3
known_NIR_4992	chr13	81813388	81817339	+	81813388	81817280	A3SS	ENSMUST00000224300.2	known	0.27	9	24	9	24	y	0.10	2	18	2	18	y	0.18	11	50	11	50	y	0.25	6	18	6	18	y	0.13	6	40	6	40	y	0.19	8	34	8	34	y	0.04	1	24	1	24	n	0.20	5	20	5	20	y	0.24	6	19	6	19	y	0.27	7	19	7	19	y	0.35	6	11	6	11	y	0.14	3	18	3	18	y	ENSMUSG00000035840.8	Lysmd3	chr13	protein_coding	LysM, putative peptidoglycan-binding, domain containing 3
known_NIR_4993	chr13	81813388	81817483	+	81813388	81817280	A3SS	ENSMUST00000224300.2	known	0.08	2	24	2	24	y	0.00	0	18	0	18	n	0.02	1	50	1	50	n	0.05	1	18	1	18	n	0.05	2	40	2	40	y	0.06	2	34	2	34	y	0.11	3	24	3	24	y	0.13	3	20	3	20	y	0.14	3	19	3	19	y	0.17	4	19	4	19	y	0.00	0	11	0	11	n	0.00	0	18	0	18	n	ENSMUSG00000035840.8	Lysmd3	chr13	protein_coding	LysM, putative peptidoglycan-binding, domain containing 3
known_NIR_4994	chr13	81813388	81817483	+	81813388	81817339	A3SS	ENSMUST00000049055.8	known	0.18	2	9	2	9	y	0.00	0	2	0	2	n	0.08	1	11	1	11	n	0.14	1	6	1	6	n	0.25	2	6	2	6	n	0.20	2	8	2	8	y	0.75	3	1	3	1	n	0.38	3	5	3	5	n	0.33	3	6	3	6	n	0.36	4	7	4	7	y	0.00	0	6	0	6	n	0.00	0	3	0	3	n	ENSMUSG00000035840.8	Lysmd3	chr13	protein_coding	LysM, putative peptidoglycan-binding, domain containing 3
known_NIR_4995	chr13	81842009	81842767	-	81837375	81842767	A3SS	ENSMUST00000048993.12	known	0.00	0	16	0	16	n	0.00	0	14	0	14	n	0.06	1	15	1	15	n	0.08	1	12	1	12	n	0.00	0	42	0	42	n	0.00	0	7	0	7	n	0.08	2	23	2	23	y	0.38	3	5	3	5	n	0.00	0	14	0	14	n	0.00	0	19	0	19	n	0.09	3	29	3	29	y	0.00	0	27	0	27	n	ENSMUSG00000035834.12	Polr3g	chr13	protein_coding	polymerase (RNA) III (DNA directed) polypeptide G
known_NIR_4996	chr13	83668599	83723654	+	83668599	83723657	A3SS	ENSMUST00000198199.5	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.25	3	9	3	9	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000005583.17	Mef2c	chr13	protein_coding	myocyte enhancer factor 2C
known_NIR_4997	chr13	83741100	83773589	+	83741100	83773384	3pMXE	ENSMUST00000196493.5	known	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.64	7	4	7	4	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000005583.17	Mef2c	chr13	protein_coding	myocyte enhancer factor 2C
known_NIR_4998	chr13	83741100;83773527	83773384;83781174	+	83741100;83773726	83773589;83781174	MXE	ENSMUST00000198199.5	known	1.00	1.5	0.0	0;3	0;0	n	1.00	1.0	0.0	1;1	0;0	n	1.00	3.5	0.0	6;1	0;0	n	-	-	-	-	-	-	1.00	0.5	0.0	1;0	0;0	n	1.00	0.5	0.0	0;1	0;0	n	0.38	5.0	8.0	4;6	7;9	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2.0	0.0	1;3	0;0	n	ENSMUSG00000005583.17	Mef2c	chr13	protein_coding	myocyte enhancer factor 2C
known_NIR_4999	chr13	83773527	83781174	+	83773726	83781174	A5SS&ES	ENSMUST00000163888.8	known	1.00	3	0	3	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.40	6	9	6	9	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	n	ENSMUSG00000005583.17	Mef2c	chr13	protein_coding	myocyte enhancer factor 2C
known_NIR_5000	chr13	84370553	84405880	+	84370553;84399452	84399349;84405880	ES	ENSMUST00000224501.2	known	0.40	2	3.0	2	2;4	n	0.00	0	5.5	0	5;6	n	0.18	3	14.0	3	12;16	y	0.31	5	11.0	5	13;9	y	0.23	5	16.5	5	13;20	y	0.27	3	8.0	3	7;9	y	0.17	2	9.5	2	8;11	y	0.25	2	6.0	2	7;5	y	0.00	0	6.5	0	6;7	n	0.17	2	10.0	2	10;10	y	0.13	1	6.5	1	7;6	n	0.12	1	7.5	1	9;6	n	ENSMUSG00000035762.12	Tmem161b	chr13	protein_coding	transmembrane protein 161B
known_NIR_5001	chr13	84370553	84405880	+	84399452	84405880	5pMXE	ENSMUST00000225708.2	known	0.33	2	4	2	4	n	0.00	0	6	0	6	n	0.16	3	16	3	16	y	0.36	5	9	5	9	y	0.20	5	20	5	20	y	0.25	3	9	3	9	y	0.15	2	11	2	11	y	0.29	2	5	2	5	n	0.00	0	7	0	7	n	0.17	2	10	2	10	y	0.14	1	6	1	6	n	0.14	1	6	1	6	n	ENSMUSG00000035762.12	Tmem161b	chr13	protein_coding	transmembrane protein 161B
known_NIR_5002	chr13	84420446	84430868	+	84420446	84430830	A3SS	ENSMUST00000057495.10	known	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.14	2	12	2	12	y	0.23	3	10	3	10	y	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.18	2	9	2	9	y	0.30	3	7	3	7	y	0.08	1	11	1	11	n	0.00	0	4	0	4	n	0.00	0	15	0	15	n	ENSMUSG00000035762.12	Tmem161b	chr13	protein_coding	transmembrane protein 161B
known_NIR_5003	chr13	84430981	84432104	+	84430981;84431483	84431423;84432104	ES	ENSMUST00000057495.10	known	0.00	0	13.5	0	15;12	n	0.00	0	22.0	0	19;25	n	0.00	0	17.0	0	10;24	n	0.00	0	9.5	0	5;14	n	0.00	0	18.5	0	17;20	n	0.00	0	11.5	0	13;10	n	0.06	1	14.5	1	12;17	n	0.00	0	11.0	0	9;13	n	0.00	0	12.0	0	11;13	n	0.10	2	17.5	2	17;18	y	0.00	0	8.5	0	8;9	n	0.00	0	11.0	0	12;10	n	ENSMUSG00000035762.12	Tmem161b	chr13	protein_coding	transmembrane protein 161B
known_NIR_5004	chr13	84432304	84434804	+	84432244	84434804	A5SS	ENSMUST00000057495.10	known	0.62	10	6	10	6	y	0.25	4	12	4	12	y	0.17	3	15	3	15	y	0.25	5	15	5	15	y	0.31	5	11	5	11	y	0.09	1	10	1	10	n	0.29	6	15	6	15	y	0.33	5	10	5	10	y	0.07	1	14	1	14	n	0.22	4	14	4	14	y	0.00	0	18	0	18	n	0.14	2	12	2	12	y	ENSMUSG00000035762.12	Tmem161b	chr13	protein_coding	transmembrane protein 161B
known_NIR_5005	chr13	85344444	85345650	+	85344444	85345470	A3SS	ENSMUST00000022030.11	known	0.05	2	37	2	37	y	0.05	1	18	1	18	n	0.03	1	39	1	39	n	0.05	3	53	3	53	y	0.04	2	45	2	45	y	0.04	1	22	1	22	n	0.07	3	41	3	41	y	0.03	1	30	1	30	n	0.07	3	41	3	41	y	0.03	2	72	2	72	y	0.06	3	50	3	50	y	0.06	3	50	3	50	y	ENSMUSG00000021548.11	Ccnh	chr13	protein_coding	cyclin H
known_NIR_5006	chr13	85345680	85350560	+	85345680	85350452	A3SS	ENSMUST00000022030.11	known	0.06	5	74	5	74	y	0.12	4	28	4	28	y	0.24	8	25	8	25	y	0.04	2	49	2	49	y	0.12	8	60	8	60	y	0.15	4	23	4	23	y	0.13	7	45	7	45	y	0.12	3	21	3	21	y	0.06	2	34	2	34	y	0.10	7	62	7	62	y	0.11	4	32	4	32	y	0.05	3	55	3	55	y	ENSMUSG00000021548.11	Ccnh	chr13	protein_coding	cyclin H
known_NIR_5007	chr13	86193972	86194720	-	86193988	86194720	A3SS	ENSMUST00000131011.2	known	0.05	109	2162	109	2162	y	0.05	118	2310	118	2310	y	0.06	131	1950	131	1950	y	0.05	114	2045	114	2045	y	0.05	128	2203	128	2203	y	0.05	58	1162	58	1162	y	0.06	172	2884	172	2884	y	0.05	62	1177	62	1177	y	0.06	120	2007	120	2007	y	0.05	176	3070	176	3070	y	0.05	151	2804	151	2804	y	0.05	132	2676	132	2676	y	ENSMUSG00000017778.15	Cox7c	chr13	protein_coding	cytochrome c oxidase subunit 7C
known_NIR_5008	chr13	86193988	86194720	-	86193988	86194383	5pMXE	ENSMUST00000078764.9	known	1.00	2162	0	2162	0	n	1.00	2310	1	2310	1	n	1.00	1950	3	1950	3	y	1.00	2045	3	2045	3	y	1.00	2203	1	2203	1	n	1.00	1162	0	1162	0	n	1.00	2884	6	2884	6	y	1.00	1177	0	1177	0	n	1.00	2007	0	2007	0	n	1.00	3070	11	3070	11	y	1.00	2804	0	2804	0	n	1.00	2676	2	2676	2	y	ENSMUSG00000017778.15	Cox7c	chr13	protein_coding	cytochrome c oxidase subunit 7C
known_NIR_5009	chr13	8911301	8920673	-	8911301	8921519	A5SS	ENSMUST00000054251.13	known	1.00	2	0	2	0	n	1.00	4	0	4	0	n	0.00	0	1	0	1	n	0.71	5	2	5	2	n	0.70	7	3	7	3	y	0.57	4	3	4	3	n	0.50	3	3	3	3	n	1.00	1	0	1	0	n	0.33	2	4	2	4	n	0.38	3	5	3	5	n	0.00	0	1	0	1	n	0.45	5	6	5	6	y	ENSMUSG00000021147.18	Wdr37	chr13	protein_coding	WD repeat domain 37
known_NIR_5010	chr13	8911301	8920906	-	8911301	8920673	A5SS	ENSMUST00000164183.9	known	0.78	7	2	7	2	n	0.50	4	4	4	4	n	1.00	7	0	7	0	n	0.55	6	5	6	5	y	0.80	28	7	28	7	y	0.67	8	4	8	4	y	0.86	18	3	18	3	y	0.94	15	1	15	1	n	0.80	8	2	8	2	y	0.75	9	3	9	3	y	1.00	9	0	9	0	n	0.64	9	5	9	5	y	ENSMUSG00000021147.18	Wdr37	chr13	protein_coding	WD repeat domain 37
known_NIR_5011	chr13	8911301	8920906	-	8911301	8921519	A5SS	ENSMUST00000054251.13	known	1.00	7	0	7	0	n	1.00	4	0	4	0	n	0.88	7	1	7	1	n	0.75	6	2	6	2	n	0.90	28	3	28	3	y	0.73	8	3	8	3	y	0.86	18	3	18	3	y	1.00	15	0	15	0	n	0.67	8	4	8	4	y	0.64	9	5	9	5	y	0.90	9	1	9	1	n	0.60	9	6	9	6	y	ENSMUSG00000021147.18	Wdr37	chr13	protein_coding	WD repeat domain 37
known_NIR_5012	chr13	8911301;8920752	8920673;8920906	-	8911301	8920906	cassetteExon	ENSMUST00000021572.11	known	0.12	1.0	7	2;0	7	n	0.38	2.5	4	4;1	4	n	0.07	0.5	7	0;1	7	n	0.33	3.0	6	5;1	6	n	0.12	4.0	28	7;1	28	n	0.27	3.0	8	4;2	8	y	0.08	1.5	18	3;0	18	n	0.06	1.0	15	1;1	15	n	0.11	1.0	8	2;0	8	n	0.14	1.5	9	3;0	9	n	0.00	0.0	9	0;0	9	n	0.22	2.5	9	5;0	9	n	ENSMUSG00000021147.18	Wdr37	chr13	protein_coding	WD repeat domain 37
known_NIR_5013	chr13	8938134	8940354	+	8938089	8940354	A5SS	ENSMUST00000169314.9	known	0.02	5	320	5	320	y	0.01	1	133	1	133	n	0.01	6	624	6	624	y	0.02	7	372	7	372	y	0.02	21	926	21	926	y	0.01	6	493	6	493	y	0.00	1	629	1	629	n	0.01	6	417	6	417	y	0.01	3	298	3	298	y	0.02	10	634	10	634	y	0.01	6	431	6	431	y	0.01	4	501	4	501	y	ENSMUSG00000058258.15	Idi1	chr13	protein_coding	isopentenyl-diphosphate delta isomerase
known_NIR_5014	chr13	90219808	90237129	-	90219808	90237616	A5SS	ENSMUST00000159199.8	known	0.00	0	4	0	4	n	0.21	3	11	3	11	y	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.28	5	13	5	13	y	0.64	7	4	7	4	y	0.15	3	17	3	17	y	0.25	2	6	2	6	n	0.21	3	11	3	11	y	0.29	4	10	4	10	y	0.11	1	8	1	8	n	0.18	2	9	2	9	y	ENSMUSG00000021615.14	Xrcc4	chr13	protein_coding	X-ray repair complementing defective repair in Chinese hamster cells 4
known_NIR_5015	chr13	90249061	90251407	+	90249061	90252494	A3SS	ENSMUST00000161568.8	known	0.02	8	317	8	317	y	0.00	1	342	1	342	n	0.03	15	515	15	515	y	0.01	3	337	3	337	y	0.02	11	526	11	526	y	0.02	5	302	5	302	y	0.01	6	464	6	464	y	0.01	2	315	2	315	y	0.01	3	291	3	291	y	0.00	1	377	1	377	n	0.01	3	332	3	332	y	0.02	7	373	7	373	y	ENSMUSG00000012422.15	Tmem167	chr13	protein_coding	transmembrane protein 167
known_NIR_5016	chr13	90249061	90267459	+	90249061	90252494	3pMXE	ENSMUST00000161568.8	known	0.00	0	317	0	317	n	0.00	0	342	0	342	n	0.00	0	515	0	515	n	0.00	0	337	0	337	n	0.00	0	526	0	526	n	0.00	1	302	1	302	n	0.00	0	464	0	464	n	0.01	2	315	2	315	y	0.00	0	291	0	291	n	0.00	0	377	0	377	n	0.00	1	332	1	332	n	0.00	0	373	0	373	n	ENSMUSG00000012422.15	Tmem167	chr13	protein_coding	transmembrane protein 167
known_NIR_5017	chr13	9034923	9035245	-	9030015	9035245	A3SS	ENSMUST00000222098.2	known	0.00	0	66	0	66	n	0.00	0	45	0	45	n	0.00	0	70	0	70	n	0.03	2	61	2	61	y	0.01	1	112	1	112	n	0.00	0	44	0	44	n	0.01	1	78	1	78	n	0.06	2	34	2	34	y	0.00	0	54	0	54	n	0.00	0	84	0	84	n	0.00	0	44	0	44	n	0.00	0	115	0	115	n	ENSMUSG00000021149.9	Gtpbp4	chr13	protein_coding	GTP binding protein 4
known_NIR_5018	chr13	9042071	9045985	-	9042071;9042851	9042681;9045985	ES	ENSMUST00000222098.2	known	0.07	3	37.5	3	38;37	y	0.04	1	22.0	1	27;17	n	0.00	0	45.5	0	53;38	n	0.00	0	35.5	0	42;29	n	0.04	4	88.5	4	100;77	y	0.00	0	22.0	0	14;30	n	0.00	0	40.0	0	43;37	n	0.07	2	25.5	2	28;23	y	0.00	0	30.5	0	31;30	n	0.00	0	50.5	0	67;34	n	0.00	0	23.5	0	21;26	n	0.00	0	67.0	0	74;60	n	ENSMUSG00000021149.9	Gtpbp4	chr13	protein_coding	GTP binding protein 4
known_NIR_5019	chr13	9052153	9055509	-	9052153	9124175	A5SS	ENSMUST00000221672.2	known	1.00	7	0	7	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.91	10	1	10	1	n	1.00	3	0	3	0	n	-	-	-	-	-	-	0.70	7	3	7	3	y	-	-	-	-	-	-	0.50	5	5	5	5	y	1.00	10	0	10	0	n	0.73	16	6	16	6	y	0.88	15	2	15	2	y	ENSMUSG00000113543.2	Gm36264	chr13	lncRNA	predicted gene, 36264
known_NIR_5020	chr13	9058475	9124175	-	9052153	9124175	A3SS	ENSMUST00000221672.2	known	1.00	2	0	2	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.40	4	6	4	6	y	0.71	5	2	5	2	n	ENSMUSG00000113543.2	Gm36264	chr13	lncRNA	predicted gene, 36264
known_NIR_5021	chr13	91071525	91071706	+	91071318	91071706	A5SS	ENSMUST00000051955.9	known	0.00	2	758	2	758	y	0.00	2	766	2	766	y	0.00	3	977	3	977	y	0.00	0	640	0	640	n	0.00	2	956	2	956	y	0.00	0	522	0	522	n	0.00	2	974	2	974	y	0.00	0	530	0	530	n	0.00	0	591	0	591	n	0.00	1	963	1	963	n	0.00	2	828	2	828	y	0.00	3	844	3	844	y	ENSMUSG00000049517.9	Rps23	chr13	protein_coding	ribosomal protein S23
known_NIR_5022	chr13	9144216;9168141	9168002;9172144	+	9144216	9172144	cassetteExon	ENSMUST00000188211.8	known	0.17	2.0	10	0;4	10	n	0.00	0.0	2	0;0	2	n	0.11	3.5	28	2;5	28	y	0.06	2.0	30	2;2	30	y	0.09	4.0	39	2;6	39	y	0.01	0.5	34	0;1	34	n	0.14	1.5	9	0;3	9	n	0.14	1.5	9	2;1	9	n	0.50	4.0	4	0;8	4	n	0.11	3.0	25	1;5	25	n	0.25	4.0	12	6;2	12	y	0.07	2.0	27	1;3	27	n	ENSMUSG00000033499.15	Larp4b	chr13	protein_coding	La ribonucleoprotein domain family, member 4B
known_NIR_5023	chr13	91712813	91812237	+	91712813;91790510	91790421;91812237	ES	ENSMUST00000156547.8	known	0.80	2	0.5	2	1;0	n	0.86	3	0.5	3	0;1	n	0.32	3	6.5	3	5;8	y	0.00	0	1.5	0	1;2	n	0.00	0	2.0	0	2;2	n	0.00	0	0.5	0	0;1	n	0.29	1	2.5	1	2;3	n	0.57	2	1.5	2	2;1	n	0.00	0	0.5	0	1;0	n	0.00	0	4.0	0	7;1	n	0.38	3	5.0	3	6;4	y	0.50	3	3.0	3	4;2	n	ENSMUSG00000003992.16	Ssbp2	chr13	protein_coding	single-stranded DNA binding protein 2
known_NIR_5024	chr13	91945373	91948730	-	91945373	91946942	A5SS	ENSMUST00000178637.8	known	0.05	2	35	2	35	y	0.09	4	39	4	39	y	0.10	5	43	5	43	y	0.09	2	20	2	20	y	0.06	3	50	3	50	y	0.04	1	24	1	24	n	0.03	2	64	2	64	y	0.04	1	27	1	27	n	0.17	6	30	6	30	y	0.04	2	50	2	50	y	0.00	0	36	0	36	n	0.06	4	61	4	61	y	ENSMUSG00000021621.16	Zcchc9	chr13	protein_coding	zinc finger, CCHC domain containing 9
known_NIR_5025	chr13	91945373	91948730	-	91945373;91947010	91946942;91948730	ES	ENSMUST00000022121.13	known	0.06	2	34.0	2	35;33	y	0.11	4	33.5	4	39;28	y	0.12	5	37.5	5	43;32	y	0.09	2	19.5	2	20;19	y	0.06	3	51.5	3	50;53	y	0.03	1	29.5	1	24;35	n	0.04	2	52.0	2	64;40	y	0.04	1	23.5	1	27;20	n	0.18	6	28.0	6	30;26	y	0.04	2	42.5	2	50;35	y	0.00	0	33.5	0	36;31	n	0.08	4	48.0	4	61;35	y	ENSMUSG00000021621.16	Zcchc9	chr13	protein_coding	zinc finger, CCHC domain containing 9
known_NIR_5026	chr13	91945373	91948730	-	91947010	91948730	3pMXE	ENSMUST00000178084.2	known	0.06	2	33	2	33	y	0.12	4	28	4	28	y	0.14	5	32	5	32	y	0.10	2	19	2	19	y	0.05	3	53	3	53	y	0.03	1	35	1	35	n	0.05	2	40	2	40	y	0.05	1	20	1	20	n	0.19	6	26	6	26	y	0.05	2	35	2	35	y	0.00	0	31	0	31	n	0.10	4	35	4	35	y	ENSMUSG00000021621.16	Zcchc9	chr13	protein_coding	zinc finger, CCHC domain containing 9
known_NIR_5027	chr13	9208265	9214711	+	9208265;9208838	9208587;9214711	ES	ENSMUST00000188211.8	known	0.02	1	56.0	1	44;68	n	0.03	1	32.5	1	17;48	n	0.10	6	54.5	6	50;59	y	0.04	3	73.0	3	58;88	y	0.07	6	78.0	6	63;93	y	0.12	6	44.5	6	42;47	y	0.10	7	61.0	7	55;67	y	0.06	3	48.0	3	42;54	y	0.10	4	36.0	4	35;37	y	0.05	4	72.0	4	66;78	y	0.03	1	37.0	1	37;37	n	0.10	9	85.0	9	64;106	y	ENSMUSG00000033499.15	Larp4b	chr13	protein_coding	La ribonucleoprotein domain family, member 4B
known_NIR_5028	chr13	92372236	92386335	-	92372239	92386335	A3SS	ENSMUST00000185852.7	known	0.00	0	14	0	14	n	0.25	4	12	4	12	y	0.29	2	5	2	5	n	0.15	2	11	2	11	y	0.19	7	29	7	29	y	0.25	2	6	2	6	n	0.28	7	18	7	18	y	0.43	3	4	3	4	n	0.25	5	15	5	15	y	0.20	7	28	7	28	y	0.35	8	15	8	15	y	0.41	12	17	12	17	y	ENSMUSG00000014850.16	Msh3	chr13	protein_coding	mutS homolog 3
known_NIR_5029	chr13	92487868	92489733	-	92487959	92489733	A3SS	ENSMUST00000185852.7	known	0.11	1	8	1	8	n	0.14	1	6	1	6	n	0.00	0	4	0	4	n	0.38	3	5	3	5	n	0.22	2	7	2	7	n	-	-	-	-	-	-	0.17	1	5	1	5	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.12	2	14	2	14	y	0.29	2	5	2	5	n	0.33	6	12	6	12	y	ENSMUSG00000014850.16	Msh3	chr13	protein_coding	mutS homolog 3
known_NIR_5030	chr13	92487868	92491271	-	92487868;92489850	92489733;92491271	ES	ENSMUST00000191550.7	known	0.00	0	5.5	0	1;10	n	0.25	1	3.0	1	1;5	n	0.00	0	1.5	0	0;3	n	0.14	1	6.0	1	3;9	n	0.50	5	5.0	5	2;8	y	-	-	-	-	-	-	0.17	1	5.0	1	1;9	n	0.44	2	2.5	2	0;5	n	0.00	0	0.5	0	0;1	n	0.32	4	8.5	4	2;15	y	0.00	0	2.0	0	2;2	n	0.12	1	7.5	1	6;9	n	ENSMUSG00000014850.16	Msh3	chr13	protein_coding	mutS homolog 3
known_NIR_5031	chr13	92487868	92491271	-	92489850	92491271	A3SS&ES	ENSMUST00000185852.7	known	0.00	0	10	0	10	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.10	1	9	1	9	n	0.38	5	8	5	8	y	-	-	-	-	-	-	0.10	1	9	1	9	n	0.29	2	5	2	5	n	0.00	0	1	0	1	n	0.21	4	15	4	15	y	0.00	0	2	0	2	n	0.10	1	9	1	9	n	ENSMUSG00000014850.16	Msh3	chr13	protein_coding	mutS homolog 3
known_NIR_5032	chr13	92604670;92610636	92610471;92614336	-	92604670	92614336	cassetteExon	ENSMUST00000225299.2	known	0.87	6.5	1	6;7	1	n	0.75	3.0	1	3;3	1	n	1.00	6.0	0	8;4	0	n	1.00	11.0	0	11;11	0	n	0.84	10.5	2	15;6	2	y	1.00	4.5	0	6;3	0	n	0.93	13.5	1	15;12	1	n	1.00	5.5	0	6;5	0	n	1.00	9.5	0	14;5	0	n	0.93	13.0	1	18;8	1	n	0.74	14.5	5	16;13	5	y	1.00	10.0	0	13;7	0	n	ENSMUSG00000034334.9	Fam151b	chr13	protein_coding	family with sequence similarity 151, member B
known_NIR_5033	chr13	93294721	93296153	-	93291569	93296153	A3SS	ENSMUST00000225868.2	known	0.06	3	45	3	45	y	0.04	2	46	2	46	y	0.00	0	61	0	61	n	0.02	1	55	1	55	n	0.00	0	67	0	67	n	0.00	0	31	0	31	n	0.00	0	69	0	69	n	0.00	0	32	0	32	n	0.00	0	46	0	46	n	0.00	0	69	0	69	n	0.02	1	59	1	59	n	0.00	0	80	0	80	n	ENSMUSG00000042167.7	Tent2	chr13	protein_coding	terminal nucleotidyltransferase 2
known_NIR_5034	chr13	93311226	93312027	-	93311214	93312027	A3SS	ENSMUST00000225868.2	known	0.58	29	21	29	21	y	0.46	11	13	11	13	y	0.48	28	30	28	30	y	0.62	48	29	48	29	y	0.69	44	20	44	20	y	0.61	14	9	14	9	y	0.68	44	21	44	21	y	0.66	19	10	19	10	y	0.56	35	27	35	27	y	0.61	59	37	59	37	y	0.46	26	31	26	31	y	0.58	45	33	45	33	y	ENSMUSG00000042167.7	Tent2	chr13	protein_coding	terminal nucleotidyltransferase 2
known_NIR_5035	chr13	93313766	93320587	-	93312320	93320587	A3SS	ENSMUST00000225868.2	known	0.06	2	29	2	29	y	0.03	1	30	1	30	n	0.09	7	69	7	69	y	0.03	2	56	2	56	y	0.08	5	59	5	59	y	0.10	2	18	2	18	y	0.03	2	70	2	70	y	0.07	3	42	3	42	y	0.00	0	52	0	52	n	0.04	3	65	3	65	y	0.05	3	54	3	54	y	0.04	3	82	3	82	y	ENSMUSG00000042167.7	Tent2	chr13	protein_coding	terminal nucleotidyltransferase 2
known_NIR_5036	chr13	93322984	93328301	-	93322984	93328602	A5SS	ENSMUST00000225868.2	known	0.07	2	26	2	26	y	0.18	2	9	2	9	y	0.00	0	26	0	26	n	0.04	1	25	1	25	n	0.07	3	40	3	40	y	0.00	0	16	0	16	n	0.13	5	34	5	34	y	0.09	1	10	1	10	n	0.00	0	14	0	14	n	0.00	0	34	0	34	n	0.07	2	28	2	28	y	0.04	1	26	1	26	n	ENSMUSG00000042167.7	Tent2	chr13	protein_coding	terminal nucleotidyltransferase 2
known_NIR_5037	chr13	93492587	93502751	+	93492587	93524032	A3SS	ENSMUST00000060490.11	known	0.27	3	8	3	8	y	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.25	3	9	3	9	y	0.00	0	4	0	4	n	0.08	1	12	1	12	n	ENSMUSG00000007617.19	Homer1	chr13	protein_coding	homer scaffolding protein 1
known_NIR_5038	chr13	93492587	93524032	+	93492587	93522853	3pMXE	ENSMUST00000109494.8	known	0.89	8	1	8	1	n	0.78	7	2	7	2	n	0.86	12	2	12	2	y	1.00	7	0	7	0	n	0.80	8	2	8	2	y	1.00	7	0	7	0	n	0.85	11	2	11	2	y	0.90	9	1	9	1	n	0.57	4	3	4	3	n	0.64	9	5	9	5	y	1.00	4	0	4	0	n	0.92	12	1	12	1	n	ENSMUSG00000007617.19	Homer1	chr13	protein_coding	homer scaffolding protein 1
known_NIR_5039	chr13	93492587	93524032	+	93492587;93522888	93522853;93524032	ES	ENSMUST00000080127.12	known	0.94	8	0.5	8	1;0	n	0.82	7	1.5	7	2;1	n	0.89	12	1.5	12	2;1	n	0.93	7	0.5	7	0;1	n	0.84	8	1.5	8	2;1	n	0.93	7	0.5	7	0;1	n	0.76	11	3.5	11	2;5	y	0.86	9	1.5	9	1;2	n	0.57	4	3.0	4	3;3	y	0.67	9	4.5	9	5;4	y	1.00	4	0.0	4	0;0	n	0.96	12	0.5	12	1;0	n	ENSMUSG00000007617.19	Homer1	chr13	protein_coding	homer scaffolding protein 1
known_NIR_5040	chr13	93492587	93524032	+	93522888	93524032	A5SS&ES	ENSMUST00000109498.8	known	1.00	8	0	8	0	n	0.88	7	1	7	1	n	0.92	12	1	12	1	n	0.88	7	1	7	1	n	0.89	8	1	8	1	n	0.88	7	1	7	1	n	0.69	11	5	11	5	y	0.82	9	2	9	2	y	0.57	4	3	4	3	n	0.69	9	4	9	4	y	1.00	4	0	4	0	n	1.00	12	0	12	0	n	ENSMUSG00000007617.19	Homer1	chr13	protein_coding	homer scaffolding protein 1
known_NIR_5041	chr13	93848468	93848554	+	93847966	93848554	A5SS	ENSMUST00000048001.8	known	0.01	5	443	5	443	y	0.00	0	346	0	346	n	0.01	5	331	5	331	y	0.01	3	589	3	589	y	0.00	0	724	0	724	n	0.00	0	225	0	225	n	0.00	2	641	2	641	y	0.02	4	241	4	241	y	0.00	1	546	1	546	n	0.01	5	834	5	834	y	0.00	1	738	1	738	n	0.00	0	718	0	718	n	ENSMUSG00000042102.8	Dmgdh	chr13	protein_coding	dimethylglycine dehydrogenase precursor
known_NIR_5042	chr13	94389578	94422074	-	94389578	94421728	A5SS	ENSMUST00000022197.15	known	0.00	0	53	0	53	n	0.00	0	34	0	34	n	0.10	12	108	12	108	y	0.03	2	71	2	71	y	0.01	1	101	1	101	n	0.04	3	75	3	75	y	0.00	0	59	0	59	n	0.03	3	83	3	83	y	0.00	0	37	0	37	n	0.04	3	69	3	69	y	0.00	0	31	0	31	n	0.04	3	65	3	65	y	ENSMUSG00000021687.15	Scamp1	chr13	protein_coding	secretory carrier membrane protein 1
known_NIR_5043	chr13	94679391	94684263	+	94679384	94684263	A5SS	ENSMUST00000022196.5	known	0.04	4	92	4	92	y	0.02	2	84	2	84	y	0.05	3	61	3	61	y	0.03	2	77	2	77	y	0.03	3	100	3	100	y	0.03	2	58	2	58	y	0.01	1	89	1	89	n	0.05	3	56	3	56	y	0.00	0	72	0	72	n	0.00	0	85	0	85	n	0.04	3	71	3	71	y	0.00	0	107	0	107	n	ENSMUSG00000021686.7	Ap3b1	chr13	protein_coding	adaptor-related protein complex 3, beta 1 subunit
known_NIR_5044	chr13	94684401;94701708	94701673;94702113	+	94684401	94702113	cassetteExon	ENSMUST00000022196.5	known	0.02	2.0	87	0;4	87	n	0.00	0.0	121	0;0	121	n	0.00	0.0	84	0;0	84	n	0.00	0.0	90	0;0	90	n	0.00	0.0	122	0;0	122	n	0.00	0.0	56	0;0	56	n	0.03	3.0	101	3;3	101	y	0.01	0.5	52	1;0	52	n	0.03	2.0	60	2;2	60	y	0.00	0.0	82	0;0	82	n	0.00	0.0	86	0;0	86	n	0.00	0.0	100	0;0	100	n	ENSMUSG00000021686.7	Ap3b1	chr13	protein_coding	adaptor-related protein complex 3, beta 1 subunit
known_NIR_5045	chr13	95113097	95114982	+	95113097	95114978	A3SS	ENSMUST00000160115.8	known	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.05	1	20	1	20	n	0.14	2	12	2	12	y	0.00	0	20	0	20	n	0.00	0	22	0	22	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	15	0	15	n	ENSMUSG00000042015.18	Wdr41	chr13	protein_coding	WD repeat domain 41
known_NIR_5046	chr13	95796858	95798095	-	95796858	95797507	5pMXE	ENSMUST00000238404.2	known	0.01	2	256	2	256	y	0.00	0	209	0	209	n	0.00	0	380	0	380	n	0.00	0	405	0	405	n	0.00	0	404	0	404	n	0.00	0	185	0	185	n	0.00	0	370	0	370	n	0.00	0	222	0	222	n	0.00	0	249	0	249	n	0.01	4	455	4	455	y	0.00	0	262	0	262	n	0.00	0	370	0	370	n	ENSMUSG00000021676.11	Iqgap2	chr13	protein_coding	IQ motif containing GTPase activating protein 2
known_NIR_5047	chr13	95796858	95798095	-	95796858;95797591	95797507;95798095	ES	ENSMUST00000068603.8	known	0.01	2	261.5	2	256;267	y	0.00	0	228.0	0	209;247	n	0.00	0	385.5	0	380;391	n	0.00	0	396.5	0	405;388	n	0.00	0	405.0	0	404;406	n	0.00	0	185.0	0	185;185	n	0.00	0	399.5	0	370;429	n	0.00	0	216.5	0	222;211	n	0.00	0	265.5	0	249;282	n	0.01	4	485.5	4	455;516	y	0.00	0	246.0	0	262;230	n	0.00	0	373.0	0	370;376	n	ENSMUSG00000021676.11	Iqgap2	chr13	protein_coding	IQ motif containing GTPase activating protein 2
known_NIR_5048	chr13	95974431	96028947	-	95974431	96028172	5pMXE	ENSMUST00000068603.8	known	0.00	0	81	0	81	n	0.00	0	57	0	57	n	0.00	0	164	0	164	n	0.00	0	189	0	189	n	0.01	3	201	3	201	y	0.00	0	112	0	112	n	0.01	1	118	1	118	n	0.00	0	97	0	97	n	0.00	0	90	0	90	n	0.00	0	168	0	168	n	0.00	0	75	0	75	n	0.00	0	138	0	138	n	ENSMUSG00000021676.11	Iqgap2	chr13	protein_coding	IQ motif containing GTPase activating protein 2
known_NIR_5049	chr13	96541191;96546818	96546599;96547098	+	96541191	96547098	cassetteExon	ENSMUST00000099295.6	known	0.00	0.0	6	0;0	6	n	0.00	0.0	10	0;0	10	n	0.00	0.0	8	0;0	8	n	0.08	0.5	6	0;1	6	n	0.20	2.5	10	2;3	10	y	0.00	0.0	5	0;0	5	n	0.23	1.5	5	1;2	5	n	0.00	0.0	4	0;0	4	n	0.07	0.5	7	0;1	7	n	0.25	3.0	9	1;5	9	n	0.00	0.0	6	0;0	6	n	0.04	0.5	12	0;1	12	n	ENSMUSG00000021671.10	Poc5	chr13	protein_coding	POC5 centriolar protein
known_NIR_5050	chr13	9664504	9665781	+	9664492	9665781	A5SS	ENSMUST00000174552.8	known	0.25	1	3	1	3	n	0.14	1	6	1	6	n	0.46	11	13	11	13	y	0.07	1	14	1	14	n	0.19	5	22	5	22	y	0.50	3	3	3	3	n	0.22	2	7	2	7	n	0.33	3	6	3	6	n	0.12	1	7	1	7	n	0.18	2	9	2	9	y	0.50	5	5	5	5	y	0.56	5	4	5	4	n	ENSMUSG00000048264.17	Dip2c	chr13	protein_coding	disco interacting protein 2 homolog C
known_NIR_5051	chr13	96753057;96753579	96753502;96761203	+	96753057	96761203	cassetteExon	ENSMUST00000179226.8	known	0.16	6.5	35	5;8	35	y	0.30	6.5	15	5;8	15	y	0.34	14.5	28	13;16	28	y	0.31	17.5	39	20;15	39	y	0.16	5.5	29	6;5	29	y	0.25	7.5	23	9;6	23	y	0.21	6.0	23	7;5	23	y	0.27	9.0	24	11;7	24	y	0.16	5.0	26	4;6	26	y	0.21	10.0	38	8;12	38	y	0.11	4.0	33	4;4	33	y	0.19	14.5	63	16;13	63	y	ENSMUSG00000021669.16	Cert1	chr13	protein_coding	ceramide transporter 1
known_NIR_5052	chr13	96765607	96767269	+	96765653	96767269	A5SS	ENSMUST00000179226.8	known	0.00	0	27	0	27	n	0.00	0	17	0	17	n	0.06	2	34	2	34	y	0.05	2	40	2	40	y	0.00	0	51	0	51	n	0.00	0	20	0	20	n	0.00	0	38	0	38	n	0.00	0	39	0	39	n	0.00	0	29	0	29	n	0.00	0	43	0	43	n	0.00	0	18	0	18	n	0.00	0	45	0	45	n	ENSMUSG00000021669.16	Cert1	chr13	protein_coding	ceramide transporter 1
known_NIR_5053	chr13	96803216	96805661	-	96803216	96807319	A5SS	ENSMUST00000022176.15	known	0.00	0	34	0	34	n	0.00	0	7	0	7	n	0.02	1	45	1	45	n	0.00	0	24	0	24	n	0.00	0	81	0	81	n	0.00	0	35	0	35	n	0.00	0	24	0	24	n	0.00	0	40	0	40	n	0.00	0	27	0	27	n	0.04	2	49	2	49	y	0.00	0	22	0	22	n	0.02	2	87	2	87	y	ENSMUSG00000021670.15	Hmgcr	chr13	protein_coding	3-hydroxy-3-methylglutaryl-Coenzyme A reductase
known_NIR_5054	chr13	96803216	96806909	-	96803216	96807319	A5SS	ENSMUST00000022176.15	known	0.00	0	34	0	34	n	0.00	0	7	0	7	n	0.06	3	45	3	45	y	0.08	2	24	2	24	y	0.04	3	81	3	81	y	0.12	5	35	5	35	y	0.04	1	24	1	24	n	0.11	5	40	5	40	y	0.07	2	27	2	27	y	0.06	3	49	3	49	y	0.15	4	22	4	22	y	0.05	5	87	5	87	y	ENSMUSG00000021670.15	Hmgcr	chr13	protein_coding	3-hydroxy-3-methylglutaryl-Coenzyme A reductase
known_NIR_5055	chr13	96803216	96806956	-	96803216	96807319	A5SS	ENSMUST00000022176.15	known	0.00	0	34	0	34	n	0.00	0	7	0	7	n	0.00	0	45	0	45	n	0.00	0	24	0	24	n	0.01	1	81	1	81	n	0.08	3	35	3	35	y	0.00	0	24	0	24	n	0.00	0	40	0	40	n	0.00	0	27	0	27	n	0.04	2	49	2	49	y	0.04	1	22	1	22	n	0.00	0	87	0	87	n	ENSMUSG00000021670.15	Hmgcr	chr13	protein_coding	3-hydroxy-3-methylglutaryl-Coenzyme A reductase
known_NIR_5056	chr13	97268462	97270047	-	97268543	97270047	A3SS	ENSMUST00000073456.9	known	0.00	0	307	0	307	n	0.00	0	270	0	270	n	0.01	3	332	3	332	y	0.00	0	296	0	296	n	0.00	0	384	0	384	n	0.00	0	184	0	184	n	0.00	0	379	0	379	n	0.00	0	181	0	181	n	0.00	0	288	0	288	n	0.00	0	347	0	347	n	0.00	0	340	0	340	n	0.00	0	394	0	394	n	ENSMUSG00000060739.9	Nsa2	chr13	protein_coding	NSA2 ribosome biogenesis homolog
known_NIR_5057	chr13	97274567	97278435	+	97274534	97278435	A5SS	ENSMUST00000160139.8	known	0.62	10	6	10	6	y	0.67	12	6	12	6	y	0.60	24	16	24	16	y	0.70	28	12	28	12	y	0.71	32	13	32	13	y	0.60	9	6	9	6	y	0.71	15	6	15	6	y	0.83	19	4	19	4	y	0.89	17	2	17	2	y	0.70	19	8	19	8	y	0.71	20	8	20	8	y	0.71	30	12	30	12	y	ENSMUSG00000021666.17	Gfm2	chr13	protein_coding	G elongation factor, mitochondrial 2
known_NIR_5058	chr13	97274908	97278435	+	97274534	97278435	A5SS	ENSMUST00000160139.8	known	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.11	2	16	2	16	y	0.14	2	12	2	12	y	0.00	0	13	0	13	n	0.33	3	6	3	6	n	0.40	4	6	4	6	y	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.27	3	8	3	8	y	0.00	0	8	0	8	n	0.20	3	12	3	12	y	ENSMUSG00000021666.17	Gfm2	chr13	protein_coding	G elongation factor, mitochondrial 2
known_NIR_5059	chr13	97274908	97278435	+	97274567	97278435	A5SS	ENSMUST00000161843.8	known	0.09	1	10	1	10	n	0.00	0	12	0	12	n	0.08	2	24	2	24	y	0.07	2	28	2	28	y	0.00	0	32	0	32	n	0.25	3	9	3	9	y	0.21	4	15	4	15	y	0.00	0	19	0	19	n	0.06	1	17	1	17	n	0.14	3	19	3	19	y	0.00	0	20	0	20	n	0.09	3	30	3	30	y	ENSMUSG00000021666.17	Gfm2	chr13	protein_coding	G elongation factor, mitochondrial 2
known_NIR_5060	chr13	97286921;97288232	97288143;97289736	+	97286921	97289736	cassetteExon	ENSMUST00000042084.13	known	0.05	1.5	28	1;2	28	n	0.02	0.5	28	1;0	28	n	0.02	0.5	32	0;1	32	n	0.02	1.0	51	1;1	51	n	0.05	2.5	48	2;3	48	y	0.00	0.0	22	0;0	22	n	0.05	2.5	43	3;2	43	y	0.01	0.5	36	0;1	36	n	0.07	2.0	28	1;3	28	n	0.03	1.5	51	0;3	51	n	0.02	0.5	27	1;0	27	n	0.10	5.5	47	4;7	47	y	ENSMUSG00000021666.17	Gfm2	chr13	protein_coding	G elongation factor, mitochondrial 2
known_NIR_5061	chr13	97292108;97296675	97296595;97297527	+	97292108	97297527	cassetteExon	ENSMUST00000042084.13	known	0.91	31.5	3	31;32	3	y	0.96	26.0	1	28;24	1	n	0.98	48.0	1	51;45	1	n	0.96	45.0	2	40;50	2	y	0.96	50.0	2	35;65	2	y	1.00	32.5	0	30;35	0	n	1.00	46.0	0	52;40	0	n	0.97	31.5	1	31;32	1	n	0.93	39.0	3	40;38	3	y	1.00	71.5	0	75;68	0	n	1.00	39.5	0	37;42	0	n	0.99	66.5	1	75;58	1	n	ENSMUSG00000021666.17	Gfm2	chr13	protein_coding	G elongation factor, mitochondrial 2
known_NIR_5062	chr13	97311552	97315536	+	97311552	97312108	3pMXE	ENSMUST00000042084.13	known	0.02	2	130	2	130	y	0.01	1	111	1	111	n	0.02	2	95	2	95	y	0.00	0	101	0	101	n	0.00	0	117	0	117	n	0.00	0	61	0	61	n	0.00	0	124	0	124	n	0.00	0	52	0	52	n	0.00	0	88	0	88	n	0.00	0	144	0	144	n	0.01	1	127	1	127	n	0.00	0	118	0	118	n	ENSMUSG00000021666.17	Gfm2	chr13	protein_coding	G elongation factor, mitochondrial 2
known_NIR_5063	chr13	9739760	9740314	-	9739760	9740482	A5SS	ENSMUST00000110636.9	known	0.25	15	46	15	46	y	0.21	14	53	14	53	y	0.17	17	81	17	81	y	0.18	17	78	17	78	y	0.26	27	77	27	77	y	0.09	5	50	5	50	y	0.23	24	81	24	81	y	0.22	12	42	12	42	y	0.09	6	59	6	59	y	0.32	30	64	30	64	y	0.15	11	64	11	64	y	0.28	32	81	32	81	y	ENSMUSG00000021156.18	Zmynd11	chr13	protein_coding	zinc finger, MYND domain containing 11
known_NIR_5064	chr13	9745217	9745775	-	9745220	9745775	A3SS	ENSMUST00000110636.9	known	0.04	2	45	2	45	y	0.00	0	36	0	36	n	0.00	0	48	0	48	n	0.00	0	69	0	69	n	0.04	3	64	3	64	y	0.07	3	43	3	43	y	0.03	2	58	2	58	y	0.02	1	42	1	42	n	0.03	1	39	1	39	n	0.00	0	68	0	68	n	0.02	1	46	1	46	n	0.04	3	72	3	72	y	ENSMUSG00000021156.18	Zmynd11	chr13	protein_coding	zinc finger, MYND domain containing 11
known_NIR_5065	chr13	9748741	9770809	-	9748741;9760343	9760182;9770809	ES	ENSMUST00000110636.9	known	0.24	11	34.0	11	36;32	y	0.25	14	41.0	14	38;44	y	0.21	20	74.0	20	80;68	y	0.24	19	59.5	19	57;62	y	0.29	23	57.5	23	51;64	y	0.22	10	35.0	10	36;34	y	0.31	21	47.5	21	40;55	y	0.30	14	33.0	14	24;42	y	0.31	17	38.5	17	38;39	y	0.24	23	72.5	23	61;84	y	0.21	10	38.5	10	39;38	y	0.17	14	66.0	14	60;72	y	ENSMUSG00000021156.18	Zmynd11	chr13	protein_coding	zinc finger, MYND domain containing 11
known_NIR_5066	chr13	9748741	9770809	-	9760343	9770809	3pMXE	ENSMUST00000146039.2	known	0.26	11	32	11	32	y	0.24	14	44	14	44	y	0.23	20	68	20	68	y	0.23	19	62	19	62	y	0.26	23	64	23	64	y	0.23	10	34	10	34	y	0.28	21	55	21	55	y	0.25	14	42	14	42	y	0.30	17	39	17	39	y	0.21	23	84	23	84	y	0.21	10	38	10	38	y	0.16	14	72	14	72	y	ENSMUSG00000021156.18	Zmynd11	chr13	protein_coding	zinc finger, MYND domain containing 11
known_NIR_5067	chr13	9760343;9763063	9763019;9770809	-	9760343	9770809	cassetteExon	ENSMUST00000110636.9	known	0.00	0.0	32	0;0	32	n	0.04	2.0	44	2;2	44	y	0.06	4.0	68	5;3	68	y	0.06	4.0	62	4;4	62	y	0.07	4.5	64	4;5	64	y	0.01	0.5	34	1;0	34	n	0.01	0.5	55	0;1	55	n	0.02	1.0	42	1;1	42	n	0.03	1.0	39	1;1	39	n	0.05	4.0	84	5;3	84	y	0.06	2.5	38	3;2	38	y	0.05	4.0	72	3;5	72	y	ENSMUSG00000021156.18	Zmynd11	chr13	protein_coding	zinc finger, MYND domain containing 11
known_NIR_5068	chr13	9763063	9770809	-	9748741	9770809	A3SS	ENSMUST00000110637.8	known	0.00	0	11	0	11	n	0.12	2	14	2	14	y	0.13	3	20	3	20	y	0.17	4	19	4	19	y	0.18	5	23	5	23	y	0.00	0	10	0	10	n	0.05	1	21	1	21	n	0.07	1	14	1	14	n	0.06	1	17	1	17	n	0.12	3	23	3	23	y	0.17	2	10	2	10	y	0.26	5	14	5	14	y	ENSMUSG00000021156.18	Zmynd11	chr13	protein_coding	zinc finger, MYND domain containing 11
known_NIR_5069	chr13	9770968	9814382	-	9770968	9785368	A5SS&ES	ENSMUST00000110636.9	known	0.00	0	47	0	47	n	0.00	0	24	0	24	n	0.01	1	76	1	76	n	0.00	0	58	0	58	n	0.02	1	55	1	55	n	0.00	0	48	0	48	n	0.04	2	53	2	53	y	0.00	0	41	0	41	n	0.00	0	47	0	47	n	0.00	0	51	0	51	n	0.00	0	36	0	36	n	0.00	0	57	0	57	n	ENSMUSG00000021156.18	Zmynd11	chr13	protein_coding	zinc finger, MYND domain containing 11
known_NIR_5070	chr13	9770968	9814382	-	9770968;9785502	9785368;9814382	ES	ENSMUST00000110637.8	known	0.00	0	31.0	0	47;15	n	0.00	0	15.0	0	24;6	n	0.02	1	52.0	1	76;28	n	0.00	0	40.0	0	58;22	n	0.02	1	39.5	1	55;24	n	0.00	0	30.0	0	48;12	n	0.06	2	32.5	2	53;12	y	0.00	0	24.0	0	41;7	n	0.00	0	31.0	0	47;15	n	0.00	0	34.0	0	51;17	n	0.00	0	21.5	0	36;7	n	0.00	0	37.5	0	57;18	n	ENSMUSG00000021156.18	Zmynd11	chr13	protein_coding	zinc finger, MYND domain containing 11
known_NIR_5071	chr13	9785502	9785690	-	9785502	9814382	A5SS	ENSMUST00000110637.8	known	0.17	3	15	3	15	y	0.14	1	6	1	6	n	0.07	2	28	2	28	y	0.08	2	22	2	22	y	0.00	0	24	0	24	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.12	2	15	2	15	y	0.00	0	17	0	17	n	0.30	3	7	3	7	y	0.10	2	18	2	18	y	ENSMUSG00000021156.18	Zmynd11	chr13	protein_coding	zinc finger, MYND domain containing 11
known_NIR_5072	chr13	9785502	9785690	-	9785502	9814764	A5SS	ENSMUST00000110634.8	known	0.23	3	10	3	10	y	0.11	1	8	1	8	n	0.07	2	28	2	28	y	0.13	2	13	2	13	y	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.33	2	4	2	4	n	0.00	0	14	0	14	n	0.23	3	10	3	10	y	0.12	2	15	2	15	y	ENSMUSG00000021156.18	Zmynd11	chr13	protein_coding	zinc finger, MYND domain containing 11
known_NIR_5073	chr13	9785502	9814382	-	9785502	9815091	A5SS	ENSMUST00000110636.9	known	1.00	15	0	15	0	n	0.86	6	1	6	1	n	0.93	28	2	28	2	y	1.00	22	0	22	0	n	0.96	24	1	24	1	n	0.92	12	1	12	1	n	0.86	12	2	12	2	y	1.00	7	0	7	0	n	1.00	15	0	15	0	n	1.00	17	0	17	0	n	1.00	7	0	7	0	n	0.95	18	1	18	1	n	ENSMUSG00000021156.18	Zmynd11	chr13	protein_coding	zinc finger, MYND domain containing 11
known_NIR_5074	chr13	9785502	9814764	-	9785502	9814382	5pMXE	ENSMUST00000110637.8	known	0.40	10	15	10	15	y	0.57	8	6	8	6	y	0.50	28	28	28	28	y	0.37	13	22	13	22	y	0.33	12	24	12	24	y	0.52	13	12	13	12	y	0.56	15	12	15	12	y	0.65	13	7	13	7	y	0.21	4	15	4	15	y	0.45	14	17	14	17	y	0.59	10	7	10	7	y	0.45	15	18	15	18	y	ENSMUSG00000021156.18	Zmynd11	chr13	protein_coding	zinc finger, MYND domain containing 11
known_NIR_5075	chr13	9785502	9814764	-	9785502	9815091	A5SS	ENSMUST00000110636.9	known	1.00	10	0	10	0	n	0.89	8	1	8	1	n	0.93	28	2	28	2	y	1.00	13	0	13	0	n	0.92	12	1	12	1	n	0.93	13	1	13	1	n	0.88	15	2	15	2	y	1.00	13	0	13	0	n	1.00	4	0	4	0	n	1.00	14	0	14	0	n	1.00	10	0	10	0	n	0.94	15	1	15	1	n	ENSMUSG00000021156.18	Zmynd11	chr13	protein_coding	zinc finger, MYND domain containing 11
known_NIR_5076	chr13	9785502	9815197	-	9785502	9814382	5pMXE	ENSMUST00000110637.8	known	0.12	2	15	2	15	y	0.25	2	6	2	6	n	0.00	0	28	0	28	n	0.00	0	22	0	22	n	0.00	0	24	0	24	n	0.00	0	12	0	12	n	0.08	1	12	1	12	n	0.12	1	7	1	7	n	0.06	1	15	1	15	n	0.00	0	17	0	17	n	0.12	1	7	1	7	n	0.00	0	18	0	18	n	ENSMUSG00000021156.18	Zmynd11	chr13	protein_coding	zinc finger, MYND domain containing 11
known_NIR_5077	chr13	9785502	9815197	-	9785502	9814764	5pMXE	ENSMUST00000110634.8	known	0.17	2	10	2	10	y	0.20	2	8	2	8	y	0.00	0	28	0	28	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.06	1	15	1	15	n	0.07	1	13	1	13	n	0.20	1	4	1	4	n	0.00	0	14	0	14	n	0.09	1	10	1	10	n	0.00	0	15	0	15	n	ENSMUSG00000021156.18	Zmynd11	chr13	protein_coding	zinc finger, MYND domain containing 11
known_NIR_5078	chr13	98399984	98403824	+	98399984	98402659	A3SS	ENSMUST00000223606.2	known	0.14	2	12	2	12	y	0.27	3	8	3	8	y	0.12	2	14	2	14	y	0.10	2	19	2	19	y	0.00	0	20	0	20	n	0.00	0	10	0	10	n	0.06	1	15	1	15	n	0.25	2	6	2	6	n	0.29	4	10	4	10	y	0.08	2	23	2	23	y	0.00	0	14	0	14	n	0.14	3	18	3	18	y	ENSMUSG00000021661.17	Ankra2	chr13	protein_coding	ankyrin repeat, family A (RFXANK-like), 2
known_NIR_5079	chr13	98399984	98403824	+	98399984;98403040	98402659;98403824	ES	ENSMUST00000150352.3	known	0.12	2	14.5	2	12;17	y	0.14	3	18.0	3	8;28	y	0.08	2	22.0	2	14;30	y	0.08	2	23.0	2	19;27	y	0.00	0	29.0	0	20;38	n	0.00	0	9.0	0	10;8	n	0.04	1	21.5	1	15;28	n	0.17	2	10.0	2	6;14	y	0.24	4	12.5	4	10;15	y	0.06	2	34.0	2	23;45	y	0.00	0	20.0	0	14;26	n	0.12	3	23.0	3	18;28	y	ENSMUSG00000021661.17	Ankra2	chr13	protein_coding	ankyrin repeat, family A (RFXANK-like), 2
known_NIR_5080	chr13	98409360	98409886	+	98409360	98410428	A3SS	ENSMUST00000150352.3	known	0.92	12	1	12	1	n	1.00	11	0	11	0	n	0.91	21	2	21	2	y	1.00	33	0	33	0	n	1.00	16	0	16	0	n	1.00	16	0	16	0	n	1.00	31	0	31	0	n	1.00	13	0	13	0	n	0.96	22	1	22	1	n	1.00	33	0	33	0	n	1.00	25	0	25	0	n	0.91	29	3	29	3	y	ENSMUSG00000021661.17	Ankra2	chr13	protein_coding	ankyrin repeat, family A (RFXANK-like), 2
known_NIR_5081	chr13	98452806	98453374	-	98452806	98453133	A5SS	ENSMUST00000022163.15	known	0.99	951	13	951	13	y	0.99	1038	12	1038	12	y	0.99	1278	18	1278	18	y	0.99	1114	8	1114	8	y	0.99	1096	8	1096	8	y	1.00	613	2	613	2	y	0.99	1336	9	1336	9	y	0.99	606	5	606	5	y	0.99	774	6	774	6	y	0.99	1236	8	1236	8	y	0.99	1007	6	1007	6	y	1.00	1221	4	1221	4	y	ENSMUSG00000021660.15	Btf3	chr13	protein_coding	basic transcription factor 3
known_NIR_5082	chr13	98890605	98891588	-	98888853	98891588	A3SS	ENSMUST00000099277.12	known	0.00	0	17	0	17	n	0.00	0	26	0	26	n	0.00	0	42	0	42	n	0.00	0	38	0	38	n	0.04	2	43	2	43	y	0.00	0	18	0	18	n	0.00	0	37	0	37	n	0.00	0	16	0	16	n	0.00	0	24	0	24	n	0.02	1	49	1	49	n	0.04	1	24	1	24	n	0.00	0	45	0	45	n	ENSMUSG00000041685.17	Fcho2	chr13	protein_coding	FCH domain only 2
known_NIR_5083	chr13	98926381	98942814	-	98926381;98932875	98932801;98942814	ES	ENSMUST00000099277.12	known	0.00	0	25.5	0	28;23	n	0.00	0	10.5	0	11;10	n	0.07	2	27.5	2	28;27	y	0.03	1	31.0	1	31;31	n	0.00	0	39.5	0	33;46	n	0.00	0	18.0	0	16;20	n	0.08	2	22.0	2	23;21	y	0.04	1	22.0	1	19;25	n	0.00	0	15.0	0	20;10	n	0.03	1	31.0	1	31;31	n	0.10	1	9.5	1	6;13	n	0.16	4	21.0	4	16;26	y	ENSMUSG00000041685.17	Fcho2	chr13	protein_coding	FCH domain only 2
known_NIR_5084	chr13	99027298	99027435	-	99027298	99062759	A5SS	ENSMUST00000109401.8	known	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.17	6	30	6	30	y	0.08	3	35	3	35	y	0.00	0	27	0	27	n	0.00	0	14	0	14	n	0.05	1	19	1	19	n	0.17	4	19	4	19	y	0.10	1	9	1	9	n	0.05	1	21	1	21	n	0.28	5	13	5	13	y	0.00	0	17	0	17	n	ENSMUSG00000009470.18	Tnpo1	chr13	protein_coding	transportin 1
known_NIR_5085	chr13	99536884;99537900	99537778;99540012	+	99536884	99540012	cassetteExon	ENSMUST00000052249.7	known	0.03	1.5	47	2;1	47	n	0.07	3.5	46	0;7	46	n	0.07	3.0	42	2;4	42	y	0.07	4.5	57	5;4	57	y	0.13	11.0	74	6;16	74	y	0.08	3.5	41	3;4	41	y	0.06	5.0	73	4;6	73	y	0.08	4.0	49	4;4	49	y	0.12	8.5	60	6;11	60	y	0.08	7.0	76	7;7	76	y	0.12	8.0	56	11;5	56	y	0.06	6.0	88	4;8	88	y	ENSMUSG00000041632.8	Mrps27	chr13	protein_coding	mitochondrial ribosomal protein S27
known_NIR_5086	chr14	100387231	100521693	-	100387231	100521967	A5SS	ENSMUST00000228216.2	known	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.06	1	16	1	16	n	0.00	0	1	0	1	n	0.13	2	13	2	13	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.12	1	7	1	7	n	0.00	0	5	0	5	n	0.00	0	16	0	16	n	ENSMUSG00000072294.6	Klf12	chr14	protein_coding	Kruppel-like factor 12
known_NIR_5087	chr14	10168590	10182370	-	10172181	10182370	A3SS&ES	ENSMUST00000224389.2	known	0.00	0	58	0	58	n	0.00	0	48	0	48	n	0.00	0	43	0	43	n	0.00	0	64	0	64	n	0.00	0	62	0	62	n	0.00	0	33	0	33	n	0.00	0	58	0	58	n	0.09	4	40	4	40	y	0.00	0	37	0	37	n	0.00	0	75	0	75	n	0.00	0	39	0	39	n	0.00	0	56	0	56	n	ENSMUSG00000033111.17	3830406C13Rik	chr14	protein_coding	RIKEN cDNA 3830406C13 gene
known_NIR_5088	chr14	10168615;10170041	10169981;10172107	-	10168615	10172107	cassetteExon	ENSMUST00000225871.2	known	0.16	13.0	70	18;8	70	y	0.07	3.5	44	3;4	44	y	0.23	10.0	34	11;9	34	y	0.08	5.0	58	3;7	58	y	0.18	13.5	60	11;16	60	y	0.23	8.0	27	10;6	27	y	0.14	11.5	70	13;10	70	y	0.18	7.0	31	7;7	31	y	0.13	6.0	39	5;7	39	y	0.14	9.0	56	9;9	56	y	0.21	6.0	22	5;7	22	y	0.14	7.0	44	8;6	44	y	ENSMUSG00000114378.2	Gm49355	chr14	protein_coding	predicted gene, 49355
known_NIR_5089	chr14	10172181	10182370	-	10172181;10173141	10173016;10182370	ES	ENSMUST00000225871.2	known	0.91	58	5.5	58	8;3	y	0.98	48	1.0	48	0;2	n	0.91	43	4.0	43	2;6	y	0.93	64	4.5	64	5;4	y	0.91	62	6.5	62	7;6	y	0.94	33	2.0	33	3;1	n	0.91	58	5.5	58	6;5	y	0.94	40	2.5	40	1;4	n	0.97	37	1.0	37	2;0	n	0.91	75	7.0	75	6;8	y	0.95	39	2.0	39	2;2	y	0.97	56	1.5	56	1;2	n	ENSMUSG00000114378.2	Gm49355	chr14	protein_coding	predicted gene, 49355
known_NIR_5090	chr14	10182493	10185506	-	10182493	10184295	A5SS&ES	ENSMUST00000224389.2	known	0.09	6	58	6	58	y	0.00	0	41	0	41	n	0.03	1	36	1	36	n	0.07	4	53	4	53	y	0.00	0	58	0	58	n	0.00	0	38	0	38	n	0.03	2	60	2	60	y	0.05	2	37	2	37	y	0.00	0	33	0	33	n	0.06	4	59	4	59	y	0.03	1	33	1	33	n	0.10	4	38	4	38	y	ENSMUSG00000033111.17	3830406C13Rik	chr14	protein_coding	RIKEN cDNA 3830406C13 gene
known_NIR_5091	chr14	10182493;10184375	10184295;10185506	-	10182493	10185506	cassetteExon	ENSMUST00000225871.2	known	0.84	32.5	6	58;7	6	y	1.00	23.5	0	41;6	0	n	0.95	19.0	1	36;2	1	n	0.89	32.0	4	53;11	4	y	1.00	30.5	0	58;3	0	n	1.00	21.0	0	38;4	0	n	0.94	34.0	2	60;8	2	y	0.91	21.0	2	37;5	2	y	1.00	19.0	0	33;5	0	n	0.89	31.5	4	59;4	4	y	0.95	19.5	1	33;6	1	n	0.83	20.0	4	38;2	4	y	ENSMUSG00000114378.2	Gm49355	chr14	protein_coding	predicted gene, 49355
known_NIR_5092	chr14	10182493;10184378	10184295;10185506	-	10182493	10185506	cassetteExon	ENSMUST00000225871.2	known	0.86	37.0	6	58;16	6	y	1.00	27.5	0	41;14	0	n	0.96	25.0	1	36;14	1	n	0.91	39.0	4	53;25	4	y	1.00	40.0	0	58;22	0	n	1.00	26.0	0	38;14	0	n	0.96	45.0	2	60;30	2	y	0.93	25.5	2	37;14	2	y	1.00	25.0	0	33;17	0	n	0.90	38.0	4	59;17	4	y	0.96	22.5	1	33;12	1	n	0.87	26.5	4	38;15	4	y	ENSMUSG00000114378.2	Gm49355	chr14	protein_coding	predicted gene, 49355
known_NIR_5093	chr14	10184375	10185506	-	10184375	10185430	A5SS	ENSMUST00000224389.2	known	1.00	7	0	7	0	n	0.86	6	1	6	1	n	1.00	2	0	2	0	n	1.00	11	0	11	0	n	0.50	3	3	3	3	n	0.67	4	2	4	2	n	0.73	8	3	8	3	y	1.00	5	0	5	0	n	1.00	5	0	5	0	n	0.57	4	3	4	3	n	1.00	6	0	6	0	n	1.00	2	0	2	0	n	ENSMUSG00000033111.17	3830406C13Rik	chr14	protein_coding	RIKEN cDNA 3830406C13 gene
known_NIR_5094	chr14	10184375	10185506	-	10184378	10185506	A3SS	ENSMUST00000112669.10	known	0.30	7	16	7	16	y	0.30	6	14	6	14	y	0.12	2	14	2	14	y	0.31	11	25	11	25	y	0.12	3	22	3	22	y	0.22	4	14	4	14	y	0.21	8	30	8	30	y	0.26	5	14	5	14	y	0.23	5	17	5	17	y	0.19	4	17	4	17	y	0.33	6	12	6	12	y	0.12	2	15	2	15	y	ENSMUSG00000033111.17	3830406C13Rik	chr14	protein_coding	RIKEN cDNA 3830406C13 gene
known_NIR_5095	chr14	10184378	10185216	-	10184378	10185506	A5SS	ENSMUST00000112669.10	known	0.00	0	16	0	16	n	0.00	0	14	0	14	n	0.00	0	14	0	14	n	0.00	0	25	0	25	n	0.04	1	22	1	22	n	0.00	0	14	0	14	n	0.00	0	30	0	30	n	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.00	0	17	0	17	n	0.14	2	12	2	12	y	0.00	0	15	0	15	n	ENSMUSG00000033111.17	3830406C13Rik	chr14	protein_coding	RIKEN cDNA 3830406C13 gene
known_NIR_5096	chr14	10184378	10185430	-	10184378	10185506	A5SS	ENSMUST00000112669.10	known	0.00	0	16	0	16	n	0.12	2	14	2	14	y	0.22	4	14	4	14	y	0.00	0	25	0	25	n	0.00	0	22	0	22	n	0.00	0	14	0	14	n	0.00	0	30	0	30	n	0.12	2	14	2	14	y	0.00	0	17	0	17	n	0.06	1	17	1	17	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	ENSMUSG00000033111.17	3830406C13Rik	chr14	protein_coding	RIKEN cDNA 3830406C13 gene
known_NIR_5097	chr14	101874542	101877825	-	101874542;101877735	101877724;101877825	ES	ENSMUST00000100339.9	known	0.03	4	143.0	4	157;129	y	0.05	8	154.0	8	170;138	y	0.04	5	128.0	5	141;115	y	0.02	3	147.0	3	162;132	y	0.02	3	166.0	3	184;148	y	0.06	5	76.5	5	84;69	y	0.03	5	188.5	5	214;163	y	0.07	5	66.0	5	75;57	y	0.04	6	147.0	6	163;131	y	0.03	7	226.0	7	249;203	y	0.05	9	165.5	9	181;150	y	0.03	5	156.0	5	178;134	y	ENSMUSG00000075486.11	Commd6	chr14	protein_coding	COMM domain containing 6
known_NIR_5098	chr14	101874542	101877825	-	101877735	101877825	3pMXE	ENSMUST00000131022.2	known	0.03	4	129	4	129	y	0.05	8	138	8	138	y	0.04	5	115	5	115	y	0.02	3	132	3	132	y	0.02	3	148	3	148	y	0.07	5	69	5	69	y	0.03	5	163	5	163	y	0.08	5	57	5	57	y	0.04	6	131	6	131	y	0.03	7	203	7	203	y	0.06	9	150	9	150	y	0.04	5	134	5	134	y	ENSMUSG00000075486.11	Commd6	chr14	protein_coding	COMM domain containing 6
known_NIR_5099	chr14	101906012;101923198	101923007;101928008	+	101906012	101928008	cassetteExon	ENSMUST00000002289.8	known	0.02	1.0	56	2;0	56	n	0.00	0.0	68	0;0	68	n	0.01	1.5	110	1;2	110	n	0.00	0.0	67	0;0	67	n	0.00	0.0	77	0;0	77	n	0.04	2.0	45	2;2	45	y	0.01	1.0	66	0;2	66	n	0.00	0.0	48	0;0	48	n	0.02	1.0	55	1;1	55	n	0.00	0.5	113	1;0	113	n	0.00	0.0	77	0;0	77	n	0.01	0.5	86	1;0	86	n	ENSMUSG00000022111.10	Uchl3	chr14	protein_coding	ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)
known_NIR_5100	chr14	102121850	102122727	+	102121850	102126113	A3SS	ENSMUST00000160876.2	known	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.15	2	11	2	11	y	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	ENSMUSG00000033060.17	Lmo7	chr14	protein_coding	LIM domain only 7
known_NIR_5101	chr14	102121850;102126142	102126113;102133903	+	102121850	102133903	cassetteExon	ENSMUST00000159948.8	known	0.50	3.0	3	3;3	3	n	0.36	4.0	7	4;4	7	y	0.30	3.0	7	3;3	7	y	0.33	5.0	10	5;5	10	y	0.45	12.5	15	10;15	15	y	1.00	2.0	0	2;2	0	n	0.77	13.5	4	11;16	4	y	0.29	2.0	5	2;2	5	n	0.29	5.0	12	6;4	12	y	0.57	13.0	10	14;12	10	y	0.29	2.5	6	3;2	6	y	0.46	8.5	10	9;8	10	y	ENSMUSG00000033060.17	Lmo7	chr14	protein_coding	LIM domain only 7
known_NIR_5102	chr14	102149596	102150595	+	102149596	102150676	A3SS	ENSMUST00000100337.10	known	0.10	3	28	3	28	y	0.00	0	17	0	17	n	0.14	4	25	4	25	y	0.00	0	28	0	28	n	0.07	2	27	2	27	y	0.00	0	8	0	8	n	0.05	2	37	2	37	y	0.00	0	18	0	18	n	0.04	1	23	1	23	n	0.05	2	39	2	39	y	0.08	1	12	1	12	n	0.08	2	24	2	24	y	ENSMUSG00000033060.17	Lmo7	chr14	protein_coding	LIM domain only 7
known_NIR_5103	chr14	103309235;103309551	103309434;103310623	+	103309235	103310623	cassetteExon	ENSMUST00000022721.8	known	0.00	0.0	59	0;0	59	n	0.01	0.5	56	0;1	56	n	0.01	1.0	130	0;2	130	n	0.01	1.0	84	2;0	84	n	0.02	2.0	95	0;4	95	n	0.01	0.5	68	1;0	68	n	0.03	2.5	89	3;2	89	y	0.00	0.0	55	0;0	55	n	0.01	0.5	50	0;1	50	n	0.00	0.0	123	0;0	123	n	0.00	0.0	75	0;0	75	n	0.00	0.0	107	0;0	107	n	ENSMUSG00000022125.8	Cln5	chr14	protein_coding	ceroid-lipofuscinosis, neuronal 5
known_NIR_5104	chr14	103326909	103329740	-	103326909	103336598	A5SS	ENSMUST00000226952.2	known	1.00	42	0	42	0	n	1.00	43	0	43	0	n	1.00	75	0	75	0	n	0.96	72	3	72	3	y	1.00	87	0	87	0	n	0.95	62	3	62	3	y	0.99	76	1	76	1	n	1.00	61	0	61	0	n	0.98	45	1	45	1	n	1.00	85	0	85	0	n	1.00	51	0	51	0	n	1.00	92	0	92	0	n	ENSMUSG00000022124.16	Fbxl3	chr14	protein_coding	F-box and leucine-rich repeat protein 3
known_NIR_5105	chr14	103329862	103332773	-	103329862	103332629	A5SS	ENSMUST00000022720.15	known	0.30	12	28	12	28	y	0.27	6	16	6	16	y	0.19	13	57	13	57	y	0.12	9	66	9	66	y	0.13	8	53	8	53	y	0.14	5	30	5	30	y	0.18	8	37	8	37	y	0.19	9	38	9	38	y	0.25	13	38	13	38	y	0.21	13	48	13	48	y	0.21	8	31	8	31	y	0.12	8	58	8	58	y	ENSMUSG00000022124.16	Fbxl3	chr14	protein_coding	F-box and leucine-rich repeat protein 3
known_NIR_5106	chr14	103332977	103336205	-	103332977	103336598	A5SS	ENSMUST00000022720.15	known	0.27	4	11	4	11	y	0.38	3	5	3	5	n	0.00	0	30	0	30	n	0.24	7	22	7	22	y	0.30	8	19	8	19	y	0.47	8	9	8	9	y	0.30	3	7	3	7	y	0.50	6	6	6	6	y	0.41	9	13	9	13	y	0.38	6	10	6	10	y	0.31	4	9	4	9	y	0.22	8	29	8	29	y	ENSMUSG00000022124.16	Fbxl3	chr14	protein_coding	F-box and leucine-rich repeat protein 3
known_NIR_5107	chr14	103332977	103336598	-	103326909	103336598	A3SS	ENSMUST00000226952.2	known	1.00	11	0	11	0	n	1.00	5	0	5	0	n	1.00	30	0	30	0	n	0.88	22	3	22	3	y	1.00	19	0	19	0	n	0.75	9	3	9	3	y	0.88	7	1	7	1	n	1.00	6	0	6	0	n	0.93	13	1	13	1	n	1.00	10	0	10	0	n	1.00	9	0	9	0	n	1.00	29	0	29	0	n	ENSMUSG00000022124.16	Fbxl3	chr14	protein_coding	F-box and leucine-rich repeat protein 3
known_NIR_5108	chr14	103332977	103336792	-	103332977	103336205	5pMXE	ENSMUST00000145693.8	known	0.20	1	4	1	4	n	0.00	0	3	0	3	n	1.00	4	0	4	0	n	0.12	1	7	1	7	n	0.33	4	8	4	8	y	0.11	1	8	1	8	n	0.70	7	3	7	3	y	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.33	3	6	3	6	n	0.20	1	4	1	4	n	0.33	4	8	4	8	y	ENSMUSG00000022124.16	Fbxl3	chr14	protein_coding	F-box and leucine-rich repeat protein 3
known_NIR_5109	chr14	103332977	103336792	-	103332977	103336598	A5SS	ENSMUST00000022720.15	known	0.08	1	11	1	11	n	0.00	0	5	0	5	n	0.12	4	30	4	30	y	0.04	1	22	1	22	n	0.17	4	19	4	19	y	0.10	1	9	1	9	n	0.50	7	7	7	7	y	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.23	3	10	3	10	y	0.10	1	9	1	9	n	0.12	4	29	4	29	y	ENSMUSG00000022124.16	Fbxl3	chr14	protein_coding	F-box and leucine-rich repeat protein 3
known_NIR_5110	chr14	103374075	103376165	-	103374075	103376156	A5SS	ENSMUST00000161008.8	known	0.45	5	6	5	6	y	0.73	11	4	11	4	y	0.52	11	10	11	10	y	0.82	18	4	18	4	y	0.91	20	2	20	2	y	0.73	11	4	11	4	y	0.57	16	12	16	12	y	0.83	10	2	10	2	y	0.67	12	6	12	6	y	0.76	19	6	19	6	y	0.78	14	4	14	4	y	0.68	19	9	19	9	y	ENSMUSG00000033004.17	Mycbp2	chr14	protein_coding	MYC binding protein 2, E3 ubiquitin protein ligase
known_NIR_5111	chr14	103394203;103407448	103407293;103410003	-	103394203	103410003	cassetteExon	ENSMUST00000160758.8	known	0.27	1.5	4	3;0	4	n	0.14	1.0	6	1;1	6	n	0.44	5.5	7	6;5	7	y	0.00	0.0	2	0;0	2	n	0.33	2.5	5	1;4	5	n	0.83	5.0	1	4;6	1	n	0.47	3.5	4	3;4	4	y	0.38	2.5	4	0;5	4	n	0.00	0.0	6	0;0	6	n	0.09	1.0	10	1;1	10	n	0.33	1.5	3	3;0	3	n	0.53	4.5	4	6;3	4	y	ENSMUSG00000033004.17	Mycbp2	chr14	protein_coding	MYC binding protein 2, E3 ubiquitin protein ligase
known_NIR_5112	chr14	105347238	105349755	-	105347238	105354422	A5SS	ENSMUST00000172122.8	known	0.60	3	2	3	2	n	1.00	3	0	3	0	n	0.43	3	4	3	4	n	1.00	5	0	5	0	n	0.42	5	7	5	7	y	1.00	2	0	2	0	n	0.75	9	3	9	3	y	1.00	2	0	2	0	n	0.50	2	2	2	2	n	0.67	6	3	6	3	n	0.67	4	2	4	2	n	0.89	8	1	8	1	n	ENSMUSG00000022119.16	Rbm26	chr14	protein_coding	RNA binding motif protein 26
known_NIR_5113	chr14	105347238	105350905	-	105347238	105354422	A5SS	ENSMUST00000172122.8	known	0.90	18	2	18	2	y	1.00	23	0	23	0	n	0.83	20	4	20	4	y	1.00	18	0	18	0	n	0.78	25	7	25	7	y	1.00	12	0	12	0	n	0.88	22	3	22	3	y	1.00	13	0	13	0	n	0.90	18	2	18	2	y	0.89	24	3	24	3	y	0.93	26	2	26	2	y	0.97	29	1	29	1	n	ENSMUSG00000022119.16	Rbm26	chr14	protein_coding	RNA binding motif protein 26
known_NIR_5114	chr14	105347238	105350905	-	105347238;105349838	105349755;105350905	ES	ENSMUST00000165350.8	known	0.86	18	3.0	18	3;3	y	0.92	23	2.0	23	3;1	n	0.93	20	1.5	20	3;0	n	0.84	18	3.5	18	5;2	y	0.82	25	5.5	25	5;6	y	0.92	12	1.0	12	2;0	n	0.73	22	8.0	22	9;7	y	0.81	13	3.0	13	2;4	y	0.90	18	2.0	18	2;2	y	0.87	24	3.5	24	6;1	n	0.91	26	2.5	26	4;1	n	0.85	29	5.0	29	8;2	y	ENSMUSG00000091509.8	Gm17066	chr14	lncRNA	predicted gene 17066
known_NIR_5115	chr14	105352722	105354422	-	105347238	105354422	A3SS	ENSMUST00000172122.8	known	0.95	39	2	39	2	y	1.00	46	0	46	0	n	0.89	34	4	34	4	y	1.00	22	0	22	0	n	0.82	32	7	32	7	y	1.00	15	0	15	0	n	0.94	47	3	47	3	y	1.00	23	0	23	0	n	0.93	26	2	26	2	y	0.94	48	3	48	3	y	0.94	33	2	33	2	y	0.98	50	1	50	1	n	ENSMUSG00000022119.16	Rbm26	chr14	protein_coding	RNA binding motif protein 26
known_NIR_5116	chr14	105369443	105377752	-	105369443;105376598	105376527;105377752	ES	ENSMUST00000163545.8	known	0.74	14	5.0	14	4;6	y	0.64	8	4.5	8	5;4	y	0.91	29	3.0	29	4;2	y	0.61	15	9.5	15	13;6	y	0.68	23	11.0	23	11;11	y	0.59	10	7.0	10	11;3	y	0.68	18	8.5	18	6;11	y	0.74	20	7.0	20	5;9	y	0.49	10	10.5	10	11;10	y	0.67	12	6.0	12	5;7	y	0.51	10	9.5	10	9;10	y	0.74	20	7.0	20	7;7	y	ENSMUSG00000022119.16	Rbm26	chr14	protein_coding	RNA binding motif protein 26
known_NIR_5117	chr14	105377883	105378632	-	105377874	105378632	A3SS	ENSMUST00000163545.8	known	0.87	13	2	13	2	y	0.44	7	9	7	9	y	0.85	33	6	33	6	y	0.77	23	7	23	7	y	0.77	27	8	27	8	y	0.73	11	4	11	4	y	0.88	21	3	21	3	y	0.47	9	10	9	10	y	0.88	14	2	14	2	y	0.89	17	2	17	2	y	0.58	15	11	15	11	y	0.74	17	6	17	6	y	ENSMUSG00000022119.16	Rbm26	chr14	protein_coding	RNA binding motif protein 26
known_NIR_5118	chr14	105387829	105388185	-	105387844	105388185	A3SS	ENSMUST00000163545.8	known	0.76	13	4	13	4	y	0.89	8	1	8	1	n	0.94	29	2	29	2	y	0.92	11	1	11	1	n	1.00	21	0	21	0	n	1.00	20	0	20	0	n	0.89	24	3	24	3	y	0.83	10	2	10	2	y	0.83	10	2	10	2	y	1.00	26	0	26	0	n	0.91	10	1	10	1	n	0.94	17	1	17	1	n	ENSMUSG00000022119.16	Rbm26	chr14	protein_coding	RNA binding motif protein 26
known_NIR_5119	chr14	105542270	105545550	+	105542270	105545320	A3SS	ENSMUST00000181969.8	known	0.45	38	47	38	47	y	0.42	37	52	37	52	y	0.48	80	86	80	86	y	0.47	57	64	57	64	y	0.53	78	70	78	70	y	0.43	37	50	37	50	y	0.47	68	78	68	78	y	0.48	43	47	43	47	y	0.38	25	41	25	41	y	0.48	67	73	67	73	y	0.39	37	57	37	57	y	0.57	82	61	82	61	y	ENSMUSG00000053253.17	Ndfip2	chr14	protein_coding	Nedd4 family interacting protein 2
known_NIR_5120	chr14	118350471	118351725	-	118350569	118351725	A3SS	ENSMUST00000227350.2	known	0.00	0	112	0	112	n	0.05	7	125	7	125	y	0.07	9	118	9	118	y	0.07	11	145	11	145	y	0.02	3	163	3	163	y	0.01	1	71	1	71	n	0.03	5	173	5	173	y	0.00	0	72	0	72	n	0.03	3	115	3	115	y	0.03	5	169	5	169	y	0.07	9	120	9	120	y	0.04	7	151	7	151	y	ENSMUSG00000022130.11	Tgds	chr14	protein_coding	TDP-glucose 4,6-dehydratase
known_NIR_5121	chr14	118359273;118364997	118364907;118365635	-	118359273	118365635	cassetteExon	ENSMUST00000227350.2	known	0.90	45.5	5	45;46	5	y	0.84	52.0	10	56;48	10	y	0.91	62.0	6	56;68	6	y	0.86	72.0	12	81;63	12	y	0.93	68.5	5	64;73	5	y	0.88	36.0	5	42;30	5	y	0.85	82.0	15	72;92	15	y	0.97	33.0	1	39;27	1	n	0.89	54.0	7	52;56	7	y	0.90	85.5	10	85;86	10	y	0.89	57.0	7	67;47	7	y	0.86	74.5	12	63;86	12	y	ENSMUSG00000022130.11	Tgds	chr14	protein_coding	TDP-glucose 4,6-dehydratase
known_NIR_5122	chr14	12016404	12048160	+	11740048	12048160	A5SS	ENSMUST00000160340.8	known	0.83	15	3	15	3	y	0.86	18	3	18	3	y	1.00	35	0	35	0	n	1.00	12	0	12	0	n	0.91	29	3	29	3	y	0.92	23	2	23	2	y	0.76	25	8	25	8	y	0.89	16	2	16	2	y	0.96	25	1	25	1	n	0.93	14	1	14	1	n	0.91	21	2	21	2	y	0.90	18	2	18	2	y	ENSMUSG00000060579.14	Fhit	chr14	protein_coding	fragile histidine triad gene
known_NIR_5123	chr14	120579894	120616562	+	120562824	120616562	A5SS	ENSMUST00000088419.13	known	0.00	0	39	0	39	n	0.00	0	23	0	23	n	0.04	3	69	3	69	y	0.06	2	34	2	34	y	0.00	0	42	0	42	n	0.00	0	40	0	40	n	0.00	0	47	0	47	n	0.00	0	36	0	36	n	0.00	0	16	0	16	n	0.00	0	36	0	36	n	0.05	1	18	1	18	n	0.00	0	28	0	28	n	ENSMUSG00000022139.18	Mbnl2	chr14	protein_coding	muscleblind like splicing factor 2
known_NIR_5124	chr14	120626575	120633863	+	120626575;120633177	120633124;120633863	ES	ENSMUST00000088419.13	known	0.87	13	2.0	13	1;3	n	0.61	7	4.5	7	4;5	y	0.40	18	27.5	18	18;37	y	0.62	13	8.0	13	4;12	y	0.47	10	11.5	10	8;15	y	0.46	9	10.5	9	8;13	y	0.62	17	10.5	17	6;15	y	0.36	9	16.0	9	12;20	y	0.55	6	5.0	6	4;6	y	0.63	11	6.5	11	4;9	y	0.57	10	7.5	10	4;11	y	0.75	12	4.0	12	1;7	n	ENSMUSG00000022139.18	Mbnl2	chr14	protein_coding	muscleblind like splicing factor 2
known_NIR_5125	chr14	120634016	120640748	+	120634016	120666347	A3SS	ENSMUST00000227153.2	known	0.00	0	19	0	19	n	0.11	1	8	1	8	n	0.15	2	11	2	11	y	0.07	2	26	2	26	y	0.00	0	30	0	30	n	0.50	3	3	3	3	n	0.00	0	19	0	19	n	0.04	1	27	1	27	n	0.07	1	14	1	14	n	0.00	0	23	0	23	n	0.00	0	9	0	9	n	0.00	0	18	0	18	n	ENSMUSG00000022139.18	Mbnl2	chr14	protein_coding	muscleblind like splicing factor 2
known_NIR_5126	chr14	120634016	120666347	+	120634016;120642144	120642050;120666347	ES	ENSMUST00000088419.13	known	0.61	19	12.0	19	7;17	y	0.42	8	11.0	8	8;14	y	0.14	11	66.5	11	57;76	y	0.54	26	22.5	26	21;24	y	0.54	30	25.5	30	20;31	y	0.09	3	31.0	3	23;39	y	0.44	19	24.0	19	26;22	y	0.63	27	16.0	27	19;13	y	0.42	14	19.5	14	20;19	y	0.43	23	30.0	23	30;30	y	0.41	9	13.0	9	13;13	y	0.48	18	19.5	18	12;27	y	ENSMUSG00000022139.18	Mbnl2	chr14	protein_coding	muscleblind like splicing factor 2
known_NIR_5127	chr14	120634016;120640783	120640748;120642050	+	120634016	120642050	cassetteExon	ENSMUST00000088419.13	known	0.00	0.0	7	0;0	7	n	0.16	1.5	8	1;2	8	n	0.03	1.5	57	2;1	57	n	0.07	1.5	21	2;1	21	n	0.00	0.0	20	0;0	20	n	0.10	2.5	23	3;2	23	y	0.00	0.0	26	0;0	26	n	0.10	2.0	19	1;3	19	n	0.02	0.5	20	1;0	20	n	0.02	0.5	30	0;1	30	n	0.00	0.0	13	0;0	13	n	0.04	0.5	12	0;1	12	n	ENSMUSG00000022139.18	Mbnl2	chr14	protein_coding	muscleblind like splicing factor 2
known_NIR_5128	chr14	121153581	121154768	+	121148755	121154768	A5SS	ENSMUST00000032898.9	known	0.00	0	23	0	23	n	0.00	0	15	0	15	n	0.02	1	43	1	43	n	0.07	3	41	3	41	y	0.00	0	39	0	39	n	0.00	0	19	0	19	n	0.03	1	38	1	38	n	0.00	0	30	0	30	n	0.00	0	29	0	29	n	0.00	0	44	0	44	n	0.00	0	28	0	28	n	0.00	0	51	0	51	n	ENSMUSG00000030662.11	Ipo5	chr14	protein_coding	importin 5
known_NIR_5129	chr14	121575064	121617309	-	121575064	121616310	5pMXE	ENSMUST00000079817.8	known	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.00	0	29	0	29	n	0.00	0	24	0	24	n	0.04	2	43	2	43	y	0.05	1	19	1	19	n	0.00	0	17	0	17	n	0.09	1	10	1	10	n	0.00	0	11	0	11	n	0.00	0	31	0	31	n	0.00	0	8	0	8	n	0.00	0	22	0	22	n	ENSMUSG00000063410.9	Stk24	chr14	protein_coding	serine/threonine kinase 24
known_NIR_5130	chr14	121813431;121814836	121814759;121815567	-	121813431	121815567	cassetteExon	ENSMUST00000212376.3	known	1.00	16.0	0	19;13	0	n	0.50	2.0	2	1;3	2	n	0.83	15.0	3	13;17	3	y	1.00	15.5	0	15;16	0	n	0.84	20.5	4	21;20	4	y	0.83	5.0	1	4;6	1	n	0.38	5.5	9	8;3	9	y	1.00	6.5	0	2;11	0	n	0.73	5.5	2	5;6	2	y	0.77	23.0	7	16;30	7	y	0.70	7.0	3	8;6	3	y	0.86	12.5	2	10;15	2	y	ENSMUSG00000025558.20	Dock9	chr14	protein_coding	dedicator of cytokinesis 9
known_NIR_5131	chr14	121823754	121828723	-	121823754	121829224	A5SS	ENSMUST00000211803.2	known	0.75	3	1	3	1	n	0.29	2	5	2	5	n	0.29	2	5	2	5	n	0.00	0	7	0	7	n	0.17	1	5	1	5	n	0.22	2	7	2	7	n	0.31	5	11	5	11	y	0.29	2	5	2	5	n	0.00	0	5	0	5	n	0.18	2	9	2	9	y	0.17	1	5	1	5	n	0.00	0	5	0	5	n	ENSMUSG00000025558.20	Dock9	chr14	protein_coding	dedicator of cytokinesis 9
known_NIR_5132	chr14	121823754;121828766	121828723;121831748	-	121823754;121829360	121829224;121831748	MXE	ENSMUST00000040700.9	known	0.75	1.5	0.5	3;0	1;0	n	0.22	1.0	3.5	2;0	5;2	n	0.20	1.0	4.0	2;0	5;3	n	0.00	0.0	7.0	0;0	7;7	n	0.29	2.0	5.0	1;3	5;5	n	0.20	1.0	4.0	2;0	7;1	n	0.29	3.5	8.5	5;2	11;6	y	0.25	1.0	3.0	2;0	5;1	n	0.00	0.0	3.5	0;0	5;2	n	0.11	1.0	8.5	2;0	9;8	n	0.17	0.5	2.5	1;0	5;0	n	0.00	0.0	3.5	0;0	5;2	n	ENSMUSG00000025558.20	Dock9	chr14	protein_coding	dedicator of cytokinesis 9
known_NIR_5133	chr14	121829360	121831748	-	121829291	121831748	A3SS	ENSMUST00000212376.3	known	0.00	0	3	0	3	n	0.33	2	4	2	4	n	0.33	3	6	3	6	n	0.54	7	6	7	6	y	0.71	5	2	5	2	n	0.25	1	3	1	3	n	0.86	6	1	6	1	n	0.33	1	2	1	2	n	0.40	2	3	2	3	n	0.67	8	4	8	4	y	0.00	0	2	0	2	n	0.40	2	3	2	3	n	ENSMUSG00000025558.20	Dock9	chr14	protein_coding	dedicator of cytokinesis 9
known_NIR_5134	chr14	121835168	121837100	-	121835165	121837100	A3SS	ENSMUST00000212376.3	known	0.80	4	1	4	1	n	0.60	3	2	3	2	n	0.71	5	2	5	2	n	0.75	12	4	12	4	y	0.25	2	6	2	6	n	0.00	0	2	0	2	n	0.31	4	9	4	9	y	0.25	1	3	1	3	n	0.50	3	3	3	3	n	0.47	7	8	7	8	y	0.67	2	1	2	1	n	0.59	10	7	10	7	y	ENSMUSG00000025558.20	Dock9	chr14	protein_coding	dedicator of cytokinesis 9
known_NIR_5135	chr14	122116186	122144703	+	122116186;122142662	122142535;122144703	ES	ENSMUST00000039803.7	known	0.00	0	52.5	0	52;53	n	0.00	0	35.0	0	40;30	n	0.00	0	62.5	0	55;70	n	0.03	2	70.5	2	61;80	y	0.01	1	90.0	1	85;95	n	0.00	0	31.5	0	31;32	n	0.00	0	66.0	0	67;65	n	0.02	1	49.5	1	54;45	n	0.00	0	53.5	0	44;63	n	0.03	2	59.0	2	47;71	y	0.00	0	43.0	0	33;53	n	0.00	0	64.5	0	59;70	n	ENSMUSG00000041765.7	Ubac2	chr14	protein_coding	ubiquitin associated domain containing 2
known_NIR_5136	chr14	123137944	123150277	-	123137944	123150513	A5SS	ENSMUST00000110679.9	known	0.33	61	122	61	122	y	0.36	57	102	57	102	y	0.18	17	80	17	80	y	0.30	51	118	51	118	y	0.43	110	147	110	147	y	0.26	24	70	24	70	y	0.42	115	157	115	157	y	0.35	40	73	40	73	y	0.39	74	116	74	116	y	0.33	80	165	80	165	y	0.36	80	142	80	142	y	0.39	101	160	101	160	y	ENSMUSG00000041625.16	Ggact	chr14	protein_coding	gamma-glutamylamine cyclotransferase
known_NIR_5137	chr14	123150704	123161034	+	123150704	123169810	A3SS	ENSMUST00000162218.2	known	1.00	3	0	3	0	n	1.00	5	0	5	0	n	1.00	5	0	5	0	n	0.83	5	1	5	1	n	0.92	11	1	11	1	n	1.00	3	0	3	0	n	0.70	7	3	7	3	y	0.67	2	1	2	1	n	1.00	5	0	5	0	n	0.89	8	1	8	1	n	0.80	8	2	8	2	y	1.00	5	0	5	0	n	ENSMUSG00000075463.4	4930594M22Rik	chr14	lncRNA	RIKEN cDNA 4930594M22 gene
known_NIR_5138	chr14	123150704;123161089	123161034;123163542	+	123150704	123163542	cassetteExon	ENSMUST00000100291.3	known	0.60	3.0	2	3;3	2	n	0.78	7.0	2	5;9	2	y	0.83	5.0	1	5;5	1	n	0.64	3.5	2	5;2	2	n	0.85	11.5	2	11;12	2	y	1.00	3.5	0	3;4	0	n	0.90	9.0	1	7;11	1	n	0.75	3.0	1	2;4	1	n	0.67	4.0	2	5;3	2	y	0.79	7.5	2	8;7	2	y	0.75	9.0	3	8;10	3	y	0.60	7.5	5	5;10	5	y	ENSMUSG00000075463.4	4930594M22Rik	chr14	lncRNA	RIKEN cDNA 4930594M22 gene
known_NIR_5139	chr14	14211006	14212838	+	14210951	14212838	A5SS	ENSMUST00000164598.8	known	0.04	9	195	9	195	y	0.02	3	149	3	149	y	0.06	34	577	34	577	y	0.02	6	270	6	270	y	0.05	21	417	21	417	y	0.06	22	354	22	354	y	0.05	13	248	13	248	y	0.04	15	364	15	364	y	0.03	6	177	6	177	y	0.01	4	293	4	293	y	0.01	2	176	2	176	y	0.03	6	197	6	197	y	ENSMUSG00000021751.14	Acox2	chr14	protein_coding	acyl-Coenzyme A oxidase 2, branched chain
known_NIR_5140	chr14	14211934	14212838	+	14210951	14212838	A5SS	ENSMUST00000164598.8	known	0.08	17	195	17	195	y	0.14	24	149	24	149	y	0.04	25	577	25	577	y	0.14	45	270	45	270	y	0.14	68	417	68	417	y	0.06	24	354	24	354	y	0.20	61	248	61	248	y	0.11	45	364	45	364	y	0.15	32	177	32	177	y	0.11	36	293	36	293	y	0.17	37	176	37	176	y	0.15	36	197	36	197	y	ENSMUSG00000021751.14	Acox2	chr14	protein_coding	acyl-Coenzyme A oxidase 2, branched chain
known_NIR_5141	chr14	14211934	14212838	+	14211006	14212838	A5SS	ENSMUST00000022271.14	known	0.65	17	9	17	9	y	0.89	24	3	24	3	y	0.42	25	34	25	34	y	0.88	45	6	45	6	y	0.76	68	21	68	21	y	0.52	24	22	24	22	y	0.82	61	13	61	13	y	0.75	45	15	45	15	y	0.84	32	6	32	6	y	0.90	36	4	36	4	y	0.95	37	2	37	2	y	0.86	36	6	36	6	y	ENSMUSG00000021751.14	Acox2	chr14	protein_coding	acyl-Coenzyme A oxidase 2, branched chain
known_NIR_5142	chr14	14213778	14214472	+	14213778;14214118	14213967;14214472	ES	ENSMUST00000164598.8	known	0.00	0	244.5	0	208;281	n	0.00	0	190.0	0	186;194	n	0.00	0	646.0	0	553;739	n	0.00	0	323.5	0	281;366	n	0.00	0	512.5	0	472;553	n	0.00	2	452.5	2	388;517	y	0.00	0	379.5	0	333;426	n	0.00	0	421.5	0	348;495	n	0.00	0	222.0	0	163;281	n	0.00	0	322.0	0	280;364	n	0.00	0	250.0	0	231;269	n	0.00	0	301.5	0	244;359	n	ENSMUSG00000021751.14	Acox2	chr14	protein_coding	acyl-Coenzyme A oxidase 2, branched chain
known_NIR_5143	chr14	14228512	14230209	+	14228512	14239482	A3SS	ENSMUST00000164598.8	known	0.03	13	483	13	483	y	0.03	15	456	15	456	y	0.05	47	965	47	965	y	0.03	13	491	13	491	y	0.03	19	715	19	715	y	0.06	34	562	34	562	y	0.03	20	677	20	677	y	0.02	12	500	12	500	y	0.03	12	399	12	399	y	0.02	12	517	12	517	y	0.03	17	475	17	475	y	0.03	14	465	14	465	y	ENSMUSG00000021751.14	Acox2	chr14	protein_coding	acyl-Coenzyme A oxidase 2, branched chain
known_NIR_5144	chr14	14298633	14299954	+	14298633;14299612	14299327;14299954	ES	ENSMUST00000022268.10	known	0.00	0	267.0	0	222;312	n	0.00	0	179.0	0	159;199	n	0.00	0	248.5	0	238;259	n	0.00	0	284.5	0	263;306	n	0.00	0	288.5	0	247;330	n	0.00	0	121.5	0	120;123	n	0.01	2	323.0	2	261;385	y	0.00	0	123.5	0	104;143	n	0.00	0	240.5	0	217;264	n	0.00	0	373.5	0	320;427	n	0.00	0	272.5	0	200;345	n	0.00	0	355.5	0	295;416	n	ENSMUSG00000021748.10	Pdhb	chr14	protein_coding	pyruvate dehydrogenase (lipoamide) beta
known_NIR_5145	chr14	14314490	14317623	-	14314487	14317623	A3SS	ENSMUST00000036682.9	known	0.56	31	24	31	24	y	0.52	33	30	33	30	y	0.56	53	42	53	42	y	0.43	30	40	30	40	y	0.33	32	65	32	65	y	0.33	13	26	13	26	y	0.52	38	35	38	35	y	0.58	36	26	36	26	y	0.43	32	42	32	42	y	0.50	39	39	39	39	y	0.46	26	30	26	30	y	0.36	25	44	25	44	y	ENSMUSG00000033885.16	Pxk	chr14	protein_coding	PX domain containing serine/threonine kinase
known_NIR_5146	chr14	14430025	14466810	-	14430025;14441536	14441384;14466810	ES	ENSMUST00000166497.9	known	0.00	0	36.0	0	46;26	n	0.07	2	26.0	2	42;10	y	0.07	3	39.0	3	58;20	y	0.00	0	40.5	0	56;25	n	0.02	1	55.0	1	70;40	n	0.04	1	27.0	1	31;23	n	0.05	3	52.5	3	67;38	y	0.00	0	24.0	0	33;15	n	0.00	0	29.0	0	40;18	n	0.00	0	66.0	0	91;41	n	0.02	1	42.0	1	59;25	n	0.00	0	33.5	0	48;19	n	ENSMUSG00000025277.15	Abhd6	chr14	protein_coding	abhydrolase domain containing 6
known_NIR_5147	chr14	20344860	20350655	+	20344860	20345156	3pMXE	ENSMUST00000224674.2	known	0.65	11	6	11	6	y	0.69	9	4	9	4	y	0.80	12	3	12	3	y	0.77	17	5	17	5	y	0.54	13	11	13	11	y	0.55	6	5	6	5	y	0.69	24	11	24	11	y	0.69	9	4	9	4	y	0.81	21	5	21	5	y	0.50	10	10	10	10	y	0.86	19	3	19	3	y	0.72	21	8	21	8	y	ENSMUSG00000021809.11	Nudt13	chr14	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 13
known_NIR_5148	chr14	20344860	20354021	+	20344860	20345156	3pMXE	ENSMUST00000224674.2	known	0.14	1	6	1	6	n	0.50	4	4	4	4	n	0.40	2	3	2	3	n	0.50	5	5	5	5	y	0.27	4	11	4	11	y	0.17	1	5	1	5	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.29	2	5	2	5	n	0.23	3	10	3	10	y	0.00	0	3	0	3	n	0.33	4	8	4	8	y	ENSMUSG00000021809.11	Nudt13	chr14	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 13
known_NIR_5149	chr14	20344860	20354021	+	20350747	20354021	5pMXE	ENSMUST00000225442.2	known	0.04	1	22	1	22	n	0.16	4	21	4	21	y	0.14	2	12	2	12	y	0.14	5	31	5	31	y	0.12	4	29	4	29	y	0.12	1	7	1	7	n	0.00	0	36	0	36	n	0.00	0	7	0	7	n	0.07	2	27	2	27	y	0.09	3	31	3	31	y	0.00	0	17	0	17	n	0.10	4	38	4	38	y	ENSMUSG00000021809.11	Nudt13	chr14	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 13
known_NIR_5150	chr14	20344860;20345277	20345156;20350655	+	20344860	20350655	cassetteExon	ENSMUST00000022343.6	known	0.27	4.0	11	6;2	11	y	0.18	2.0	9	4;0	9	n	0.11	1.5	12	3;0	12	n	0.13	2.5	17	5;0	17	n	0.30	5.5	13	11;0	13	n	0.29	2.5	6	5;0	6	n	0.19	5.5	24	11;0	24	n	0.18	2.0	9	4;0	9	n	0.11	2.5	21	5;0	21	n	0.33	5.0	10	10;0	10	n	0.10	2.0	19	3;1	19	n	0.16	4.0	21	8;0	21	n	ENSMUSG00000021809.11	Nudt13	chr14	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 13
known_NIR_5151	chr14	20344860;20345334	20345156;20350655	+	20344860	20350655	cassetteExon	ENSMUST00000022343.6	known	0.37	6.5	11	6;7	11	y	0.33	4.5	9	4;5	9	y	0.23	3.5	12	3;4	12	y	0.21	4.5	17	5;4	17	y	0.41	9.0	13	11;7	13	y	0.37	3.5	6	5;2	6	y	0.28	9.5	24	11;8	24	y	0.22	2.5	9	4;1	9	n	0.24	6.5	21	5;8	21	y	0.47	9.0	10	10;8	10	y	0.07	1.5	19	3;0	19	n	0.21	5.5	21	8;3	21	y	ENSMUSG00000021809.11	Nudt13	chr14	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 13
known_NIR_5152	chr14	20344860;20347699	20347583;20350655	+	20344860	20350655	cassetteExon	ENSMUST00000022343.6	known	0.19	2.5	11	0;5	11	n	0.00	0.0	9	0;0	9	n	0.04	0.5	12	1;0	12	n	0.08	1.5	17	0;3	17	n	0.26	4.5	13	1;8	13	n	0.29	2.5	6	0;5	6	n	0.21	6.5	24	0;13	24	n	0.22	2.5	9	0;5	9	n	0.09	2.0	21	2;2	21	y	0.13	1.5	10	0;3	10	n	0.17	4.0	19	0;8	19	n	0.09	2.0	21	0;4	21	n	ENSMUSG00000021809.11	Nudt13	chr14	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 13
known_NIR_5153	chr14	20344860;20347699	20347583;20350655	+	20344860;20345334	20345156;20350655	MXE	ENSMUST00000224066.2	known	0.28	2.5	6.5	0;5	6;7	n	0.00	0.0	4.5	0;0	4;5	n	0.12	0.5	3.5	1;0	3;4	n	0.25	1.5	4.5	0;3	5;4	n	0.33	4.5	9.0	1;8	11;7	n	0.42	2.5	3.5	0;5	5;2	n	0.41	6.5	9.5	0;13	11;8	n	0.50	2.5	2.5	0;5	4;1	n	0.24	2.0	6.5	2;2	5;8	y	0.14	1.5	9.0	0;3	10;8	n	0.73	4.0	1.5	0;8	3;0	n	0.27	2.0	5.5	0;4	8;3	n	ENSMUSG00000021809.11	Nudt13	chr14	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 13
known_NIR_5154	chr14	20344860;20350747	20350655;20354021	+	20344860	20354021	cassetteExon	ENSMUST00000225354.2	known	0.94	16.5	1	11;22	1	n	0.79	15.0	4	9;21	4	y	0.86	12.0	2	12;12	2	y	0.83	24.0	5	17;31	5	y	0.84	21.0	4	13;29	4	y	0.87	6.5	1	6;7	1	n	1.00	30.0	0	24;36	0	n	1.00	8.0	0	9;7	0	n	0.92	24.0	2	21;27	2	y	0.87	20.5	3	10;31	3	y	1.00	18.0	0	19;17	0	n	0.88	29.5	4	21;38	4	y	ENSMUSG00000021809.11	Nudt13	chr14	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 13
known_NIR_5155	chr14	20344860;20350747	20350655;20354021	+	20344860;20345334	20345156;20354021	MXE	ENSMUST00000225722.2	known	0.80	16.5	4.0	11;22	6;2	y	0.88	15.0	2.0	9;21	4;0	n	0.89	12.0	1.5	12;12	3;0	n	0.89	24.0	3.0	17;31	5;1	n	0.78	21.0	6.0	13;29	11;1	n	0.72	6.5	2.5	6;7	5;0	n	0.85	30.0	5.5	24;36	11;0	n	0.76	8.0	2.5	9;7	4;1	n	0.91	24.0	2.5	21;27	5;0	n	0.80	20.5	5.0	10;31	10;0	n	0.90	18.0	2.0	19;17	3;1	n	0.88	29.5	4.0	21;38	8;0	n	ENSMUSG00000021809.11	Nudt13	chr14	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 13
known_NIR_5156	chr14	20345334	20354021	+	20345334;20350747	20350655;20354021	ES	ENSMUST00000223663.2	known	0.12	2	14.5	2	7;22	y	0.00	0	13.0	0	5;21	n	0.00	0	8.0	0	4;12	n	0.05	1	17.5	1	4;31	n	0.05	1	18.0	1	7;29	n	0.00	0	4.5	0	2;7	n	0.00	0	22.0	0	8;36	n	0.20	1	4.0	1	1;7	n	0.00	0	17.5	0	8;27	n	0.00	0	19.5	0	8;31	n	0.11	1	8.5	1	0;17	n	0.00	0	20.5	0	3;38	n	ENSMUSG00000021809.11	Nudt13	chr14	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 13
known_NIR_5157	chr14	20345334	20354021	+	20350747	20354021	A5SS&ES	ENSMUST00000223941.2	known	0.08	2	22	2	22	y	0.00	0	21	0	21	n	0.00	0	12	0	12	n	0.03	1	31	1	31	n	0.03	1	29	1	29	n	0.00	0	7	0	7	n	0.00	0	36	0	36	n	0.12	1	7	1	7	n	0.00	0	27	0	27	n	0.00	0	31	0	31	n	0.06	1	17	1	17	n	0.00	0	38	0	38	n	ENSMUSG00000021809.11	Nudt13	chr14	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 13
known_NIR_5158	chr14	20356434;20357432	20357301;20357761	+	20356434	20357761	cassetteExon	ENSMUST00000223663.2	known	0.21	3.0	11	1;5	11	n	0.14	1.5	9	2;1	9	n	0.58	5.5	4	4;7	4	y	0.16	3.0	16	3;3	16	y	0.28	5.0	13	6;4	13	y	0.43	4.5	6	4;5	6	y	0.14	2.5	15	5;0	15	n	0.20	3.5	14	4;3	14	y	0.17	2.0	10	2;2	10	y	0.07	2.0	28	2;2	28	y	0.05	1.0	18	2;0	18	n	0.12	3.0	21	6;0	21	n	ENSMUSG00000021809.11	Nudt13	chr14	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 13
known_NIR_5159	chr14	20359865	20361539	+	20359865	20360690	3pMXE	ENSMUST00000225354.2	known	0.04	1	24	1	24	n	0.04	1	22	1	22	n	0.00	0	10	0	10	n	0.00	0	28	0	28	n	0.00	0	41	0	41	n	0.23	3	10	3	10	y	0.04	1	25	1	25	n	0.09	2	21	2	21	y	0.00	0	11	0	11	n	0.03	1	28	1	28	n	0.00	0	28	0	28	n	0.17	4	20	4	20	y	ENSMUSG00000021809.11	Nudt13	chr14	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 13
known_NIR_5160	chr14	20359865	20361539	+	20359865;20360801	20360690;20361539	ES	ENSMUST00000223663.2	known	0.04	1	23.0	1	24;22	n	0.04	1	22.5	1	22;23	n	0.00	0	8.0	0	10;6	n	0.00	0	31.0	0	28;34	n	0.00	0	34.0	0	41;27	n	0.27	3	8.0	3	10;6	y	0.03	1	31.5	1	25;38	n	0.08	2	22.0	2	21;23	y	0.00	0	16.0	0	11;21	n	0.03	1	28.0	1	28;28	n	0.00	0	23.5	0	28;19	n	0.13	4	26.0	4	20;32	y	ENSMUSG00000021809.11	Nudt13	chr14	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 13
known_NIR_5161	chr14	20359865	20361539	+	20360801	20361539	A5SS&ES	ENSMUST00000224311.2	known	0.04	1	22	1	22	n	0.04	1	23	1	23	n	0.00	0	6	0	6	n	0.00	0	34	0	34	n	0.00	0	27	0	27	n	0.33	3	6	3	6	n	0.03	1	38	1	38	n	0.08	2	23	2	23	y	0.00	0	21	0	21	n	0.03	1	28	1	28	n	0.00	0	19	0	19	n	0.11	4	32	4	32	y	ENSMUSG00000021809.11	Nudt13	chr14	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 13
known_NIR_5162	chr14	20388564	20396679	-	20388564;20393441	20393324;20396679	ES	ENSMUST00000022344.4	known	0.00	0	32.5	0	31;34	n	0.05	2	35.5	2	38;33	y	0.00	0	42.5	0	41;44	n	0.03	2	65.5	2	63;68	y	0.00	0	84.5	0	78;91	n	0.00	0	31.0	0	25;37	n	0.00	0	59.0	0	55;63	n	0.03	1	33.0	1	28;38	n	0.06	2	33.5	2	32;35	y	0.00	0	66.5	0	65;68	n	0.02	1	42.5	1	48;37	n	0.02	1	53.5	1	45;62	n	ENSMUSG00000021810.4	Ecd	chr14	protein_coding	ecdysoneless cell cycle regulator
known_NIR_5163	chr14	20393441	20397862	-	20393441;20396889	20396679;20397862	ES	ENSMUST00000022344.4	known	0.00	0	30.5	0	34;27	n	0.00	0	36.5	0	33;40	n	0.04	2	44.5	2	44;45	y	0.00	0	64.5	0	68;61	n	0.00	0	77.5	0	91;64	n	0.00	0	37.0	0	37;37	n	0.00	0	53.5	0	63;44	n	0.00	0	38.5	0	38;39	n	0.00	0	33.5	0	35;32	n	0.00	0	57.5	0	68;47	n	0.00	0	35.5	0	37;34	n	0.00	0	56.5	0	62;51	n	ENSMUSG00000021810.4	Ecd	chr14	protein_coding	ecdysoneless cell cycle regulator
known_NIR_5164	chr14	20398462	20401362	+	20398462	20401380	A3SS	ENSMUST00000224930.2	known	0.00	0	41	0	41	n	0.00	0	31	0	31	n	0.00	0	25	0	25	n	0.00	0	56	0	56	n	0.01	1	73	1	73	n	0.00	0	24	0	24	n	0.03	2	64	2	64	y	0.00	0	25	0	25	n	0.00	0	31	0	31	n	0.03	2	71	2	71	y	0.00	0	51	0	51	n	0.05	3	59	3	59	y	ENSMUSG00000039599.17	Fam149b	chr14	protein_coding	family with sequence similarity 149, member B
known_NIR_5165	chr14	20401484	20406423	+	20401484	20402772	3pMXE	ENSMUST00000224110.2	known	0.00	0	43	0	43	n	0.00	0	40	0	40	n	0.00	0	51	0	51	n	0.01	1	71	1	71	n	0.05	4	81	4	81	y	0.00	0	39	0	39	n	0.00	0	77	0	77	n	0.00	0	28	0	28	n	0.03	2	66	2	66	y	0.00	0	71	0	71	n	0.04	3	74	3	74	y	0.00	0	63	0	63	n	ENSMUSG00000039599.17	Fam149b	chr14	protein_coding	family with sequence similarity 149, member B
known_NIR_5166	chr14	20401484	20406423	+	20401484;20402907	20402772;20406423	ES	ENSMUST00000224930.2	known	0.00	0	48.0	0	43;53	n	0.00	0	42.0	0	40;44	n	0.00	0	48.0	0	51;45	n	0.02	1	59.0	1	71;47	n	0.05	4	73.5	4	81;66	y	0.00	0	27.0	0	39;15	n	0.00	0	66.5	0	77;56	n	0.00	0	26.0	0	28;24	n	0.03	2	63.0	2	66;60	y	0.00	0	70.0	0	71;69	n	0.05	3	61.5	3	74;49	y	0.00	0	57.0	0	63;51	n	ENSMUSG00000039599.17	Fam149b	chr14	protein_coding	family with sequence similarity 149, member B
known_NIR_5167	chr14	20401484	20406423	+	20402907	20406423	5pMXE	ENSMUST00000225114.2	known	0.00	0	53	0	53	n	0.00	0	44	0	44	n	0.00	0	45	0	45	n	0.02	1	47	1	47	n	0.06	4	66	4	66	y	0.00	0	15	0	15	n	0.00	0	56	0	56	n	0.00	0	24	0	24	n	0.03	2	60	2	60	y	0.00	0	69	0	69	n	0.06	3	49	3	49	y	0.00	0	51	0	51	n	ENSMUSG00000039599.17	Fam149b	chr14	protein_coding	family with sequence similarity 149, member B
known_NIR_5168	chr14	20406565	20408092	+	20406565	20424398	A3SS	ENSMUST00000225597.2	known	0.96	45	2	45	2	y	0.91	39	4	39	4	y	0.98	42	1	42	1	n	0.91	41	4	41	4	y	0.95	42	2	42	2	y	1.00	24	0	24	0	n	0.94	47	3	47	3	y	0.96	22	1	22	1	n	0.97	37	1	37	1	n	0.95	53	3	53	3	y	0.91	31	3	31	3	y	0.92	47	4	47	4	y	ENSMUSG00000039599.17	Fam149b	chr14	protein_coding	family with sequence similarity 149, member B
known_NIR_5169	chr14	20406565	20413331	+	20406565;20408208	20408092;20413331	ES	ENSMUST00000224930.2	known	0.10	3	28.0	3	45;11	y	0.04	1	26.0	1	39;13	n	0.09	2	21.5	2	42;1	n	0.04	1	24.5	1	41;8	n	0.25	8	24.5	8	42;7	y	0.17	3	14.5	3	24;5	y	0.12	4	28.0	4	47;9	y	0.15	2	11.5	2	22;1	n	0.07	2	25.0	2	37;13	y	0.29	14	35.0	14	53;17	y	0.17	4	20.0	4	31;9	y	0.18	6	28.0	6	47;9	y	ENSMUSG00000039599.17	Fam149b	chr14	protein_coding	family with sequence similarity 149, member B
known_NIR_5170	chr14	20406565;20413518	20413331;20424398	+	20406565	20424398	cassetteExon	ENSMUST00000225597.2	known	0.92	23.0	2	3;43	2	y	0.82	18.0	4	1;35	4	n	0.94	17.0	1	2;32	1	n	0.85	23.5	4	1;46	4	n	0.91	19.5	2	8;31	2	y	1.00	13.5	0	3;24	0	n	0.90	28.5	3	4;53	3	y	0.91	10.0	1	2;18	1	n	0.95	21.0	1	2;40	1	n	0.93	37.5	3	14;61	3	y	0.88	22.5	3	4;41	3	y	0.88	28.0	4	6;50	4	y	ENSMUSG00000039599.17	Fam149b	chr14	protein_coding	family with sequence similarity 149, member B
known_NIR_5171	chr14	20406565;20413518	20413331;20424398	+	20406565;20409984	20408092;20424398	MXE	ENSMUST00000224079.2	known	0.50	23.0	23.0	3;43	45;1	n	0.47	18.0	20.5	1;35	39;2	n	0.45	17.0	21.0	2;32	42;0	n	0.53	23.5	21.0	1;46	41;1	n	0.47	19.5	22.0	8;31	42;2	y	0.53	13.5	12.0	3;24	24;0	n	0.54	28.5	24.5	4;53	47;2	y	0.45	10.0	12.0	2;18	22;2	y	0.53	21.0	19.0	2;40	37;1	n	0.57	37.5	28.5	14;61	53;4	y	0.59	22.5	15.5	4;41	31;0	n	0.54	28.0	23.5	6;50	47;0	n	ENSMUSG00000039599.17	Fam149b	chr14	protein_coding	family with sequence similarity 149, member B
known_NIR_5172	chr14	20408208;20409984	20409823;20413331	+	20408208	20413331	cassetteExon	ENSMUST00000224930.2	known	0.76	34.0	11	30;38	11	y	0.73	34.5	13	32;37	13	y	0.97	29.5	1	28;31	1	n	0.82	36.5	8	31;42	8	y	0.86	43.5	7	44;43	7	y	0.81	22.0	5	25;19	5	y	0.86	54.0	9	51;57	9	y	0.97	29.5	1	20;39	1	n	0.71	32.0	13	26;38	13	y	0.71	41.0	17	35;47	17	y	0.80	35.0	9	29;41	9	y	0.84	48.0	9	43;53	9	y	ENSMUSG00000039599.17	Fam149b	chr14	protein_coding	family with sequence similarity 149, member B
known_NIR_5173	chr14	20408208;20409984	20409823;20424398	+	20408208;20413518	20413331;20424398	MXE	ENSMUST00000051915.7	known	0.36	15.5	27.0	30;1	11;43	n	0.41	17.0	24.0	32;2	13;35	y	0.46	14.0	16.5	28;0	1;32	n	0.37	16.0	27.0	31;1	8;46	n	0.55	23.0	19.0	44;2	7;31	y	0.46	12.5	14.5	25;0	5;24	n	0.46	26.5	31.0	51;2	9;53	y	0.54	11.0	9.5	20;2	1;18	n	0.34	13.5	26.5	26;1	13;40	n	0.33	19.5	39.0	35;4	17;61	y	0.37	14.5	25.0	29;0	9;41	n	0.42	21.5	29.5	43;0	9;50	n	ENSMUSG00000039599.17	Fam149b	chr14	protein_coding	family with sequence similarity 149, member B
known_NIR_5174	chr14	20409984	20413331	+	20406565	20413331	A5SS	ENSMUST00000090503.12	known	0.93	38	3	38	3	y	0.97	37	1	37	1	n	0.94	31	2	31	2	y	0.98	42	1	42	1	n	0.84	43	8	43	8	y	0.86	19	3	19	3	y	0.93	57	4	57	4	y	0.95	39	2	39	2	y	0.95	38	2	38	2	y	0.77	47	14	47	14	y	0.91	41	4	41	4	y	0.90	53	6	53	6	y	ENSMUSG00000039599.17	Fam149b	chr14	protein_coding	family with sequence similarity 149, member B
known_NIR_5175	chr14	20409984	20424398	+	20409984;20413518	20413331;20424398	ES	ENSMUST00000225942.2	known	0.02	1	40.5	1	38;43	n	0.05	2	36.0	2	37;35	y	0.00	0	31.5	0	31;32	n	0.02	1	44.0	1	42;46	n	0.05	2	37.0	2	43;31	y	0.00	0	21.5	0	19;24	n	0.04	2	55.0	2	57;53	y	0.07	2	28.5	2	39;18	y	0.03	1	39.0	1	38;40	n	0.07	4	54.0	4	47;61	y	0.00	0	41.0	0	41;41	n	0.00	0	51.5	0	53;50	n	ENSMUSG00000039599.17	Fam149b	chr14	protein_coding	family with sequence similarity 149, member B
known_NIR_5176	chr14	20409984	20424398	+	20413518	20424398	A5SS&ES	ENSMUST00000090503.12	known	0.02	1	43	1	43	n	0.05	2	35	2	35	y	0.00	0	32	0	32	n	0.02	1	46	1	46	n	0.06	2	31	2	31	y	0.00	0	24	0	24	n	0.04	2	53	2	53	y	0.10	2	18	2	18	y	0.02	1	40	1	40	n	0.06	4	61	4	61	y	0.00	0	41	0	41	n	0.00	0	50	0	50	n	ENSMUSG00000039599.17	Fam149b	chr14	protein_coding	family with sequence similarity 149, member B
known_NIR_5177	chr14	20413518	20417914	+	20413518	20424398	A3SS	ENSMUST00000225942.2	known	0.26	15	43	15	43	y	0.42	25	35	25	35	y	0.26	11	32	11	32	y	0.35	25	46	25	46	y	0.47	28	31	28	31	y	0.25	8	24	8	24	y	0.24	17	53	17	53	y	0.42	13	18	13	18	y	0.29	16	40	16	40	y	0.40	41	61	41	61	y	0.33	20	41	20	41	y	0.32	24	50	24	50	y	ENSMUSG00000039599.17	Fam149b	chr14	protein_coding	family with sequence similarity 149, member B
known_NIR_5178	chr14	20425681	20428468	+	20425681;20428067	20427843;20428468	ES	ENSMUST00000225942.2	known	0.07	2	26.0	2	23;29	y	0.15	4	22.5	4	22;23	y	0.00	0	27.0	0	23;31	n	0.05	2	35.5	2	32;39	y	0.00	0	28.5	0	33;24	n	0.05	1	19.0	1	17;21	n	0.05	2	42.0	2	37;47	y	0.15	3	17.0	3	17;17	y	0.04	1	24.5	1	20;29	n	0.03	1	38.5	1	37;40	n	0.05	2	36.5	2	37;36	y	0.03	1	37.5	1	33;42	n	ENSMUSG00000039599.17	Fam149b	chr14	protein_coding	family with sequence similarity 149, member B
known_NIR_5179	chr14	20428951	20431817	+	20428951	20431821	A3SS	ENSMUST00000225942.2	known	0.92	23	2	23	2	y	1.00	16	0	16	0	n	1.00	34	0	34	0	n	1.00	28	0	28	0	n	1.00	30	0	30	0	n	1.00	10	0	10	0	n	1.00	46	0	46	0	n	1.00	11	0	11	0	n	1.00	24	0	24	0	n	1.00	30	0	30	0	n	1.00	22	0	22	0	n	1.00	29	0	29	0	n	ENSMUSG00000039599.17	Fam149b	chr14	protein_coding	family with sequence similarity 149, member B
known_NIR_5180	chr14	20442221	20443246	-	20442221	20443549	A5SS	ENSMUST00000061444.5	known	0.03	5	174	5	174	y	0.09	16	170	16	170	y	0.02	2	122	2	122	y	0.04	7	166	7	166	y	0.05	11	205	11	205	y	0.04	4	92	4	92	y	0.08	14	158	14	158	y	0.03	3	88	3	88	y	0.05	7	140	7	140	y	0.03	7	228	7	228	y	0.06	13	212	13	212	y	0.05	11	190	11	190	y	ENSMUSG00000049960.5	Mrps16	chr14	protein_coding	mitochondrial ribosomal protein S16
known_NIR_5181	chr14	20515014	20517939	-	20517591	20517939	3pMXE	ENSMUST00000223960.2	known	0.97	180	5	180	5	y	0.99	137	1	137	1	n	0.97	302	9	302	9	y	0.99	203	2	203	2	y	0.99	264	2	264	2	y	0.98	131	3	131	3	y	0.86	213	35	213	35	y	1.00	123	0	123	0	n	1.00	154	0	154	0	n	0.99	287	3	287	3	y	0.99	166	2	166	2	y	0.98	245	4	245	4	y	ENSMUSG00000021814.18	Anxa7	chr14	protein_coding	annexin A7
known_NIR_5182	chr14	20515014;20517591	20517526;20517939	-	20515014	20517939	cassetteExon	ENSMUST00000065504.17	known	0.02	4.5	180	4;5	180	y	0.02	2.5	137	4;1	137	n	0.02	6.0	302	3;9	302	y	0.01	2.5	203	3;2	203	y	0.01	1.5	264	1;2	264	n	0.02	2.0	131	1;3	131	n	0.13	33.0	213	31;35	213	y	0.00	0.0	123	0;0	123	n	0.01	1.0	154	2;0	154	n	0.01	3.5	287	4;3	287	y	0.01	2.5	166	3;2	166	y	0.01	3.0	245	2;4	245	y	ENSMUSG00000021814.18	Anxa7	chr14	protein_coding	annexin A7
known_NIR_5183	chr14	20523397	20529352	-	20523397	20529848	A5SS	ENSMUST00000224975.2	known	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	31	0	31	n	0.08	2	24	2	24	y	0.00	0	23	0	23	n	0.00	0	9	0	9	n	0.00	0	30	0	30	n	0.00	0	7	0	7	n	0.00	0	16	0	16	n	0.03	1	31	1	31	n	0.00	0	20	0	20	n	0.05	1	19	1	19	n	ENSMUSG00000021814.18	Anxa7	chr14	protein_coding	annexin A7
known_NIR_5184	chr14	20523397	20529848	-	20523397	20529963	A5SS	ENSMUST00000065504.17	known	0.15	10	56	10	56	y	0.23	14	46	14	46	y	0.22	31	112	31	112	y	0.21	24	92	24	92	y	0.21	23	88	23	88	y	0.15	9	52	9	52	y	0.32	30	63	30	63	y	0.15	7	40	7	40	y	0.24	16	50	16	50	y	0.21	31	119	31	119	y	0.23	20	68	20	68	y	0.23	19	64	19	64	y	ENSMUSG00000021814.18	Anxa7	chr14	protein_coding	annexin A7
known_NIR_5185	chr14	20551730	20558692	-	20551730	20553315	5pMXE	ENSMUST00000162217.2	known	0.30	11	26	11	26	y	0.20	4	16	4	16	y	0.39	16	25	16	25	y	0.15	8	46	8	46	y	0.13	5	33	5	33	y	0.36	5	9	5	9	y	0.12	7	52	7	52	y	0.36	12	21	12	21	y	0.18	5	23	5	23	y	0.13	7	45	7	45	y	0.00	0	38	0	38	n	0.18	7	32	7	32	y	ENSMUSG00000021816.12	Ppp3cb	chr14	protein_coding	protein phosphatase 3, catalytic subunit, beta isoform
known_NIR_5186	chr14	20551730	20558692	-	20551730;20553344	20553315;20558692	ES	ENSMUST00000159027.8	known	0.32	11	23.0	11	26;20	y	0.20	4	16.5	4	16;17	y	0.42	16	22.5	16	25;20	y	0.15	8	44.5	8	46;43	y	0.14	5	31.0	5	33;29	y	0.33	5	10.0	5	9;11	y	0.13	7	45.0	7	52;38	y	0.38	12	20.0	12	21;19	y	0.18	5	22.5	5	23;22	y	0.15	7	40.5	7	45;36	y	0.00	0	39.5	0	38;41	n	0.18	7	32.0	7	32;32	y	ENSMUSG00000021816.12	Ppp3cb	chr14	protein_coding	protein phosphatase 3, catalytic subunit, beta isoform
known_NIR_5187	chr14	20559565	20565591	-	20559568	20565591	A3SS	ENSMUST00000159027.8	known	0.39	27	42	27	42	y	0.51	21	20	21	20	y	0.52	42	39	42	39	y	0.59	44	31	44	31	y	0.64	59	33	59	33	y	0.55	17	14	17	14	y	0.40	35	53	35	53	y	0.47	18	20	18	20	y	0.57	26	20	26	20	y	0.58	47	34	47	34	y	0.49	26	27	26	27	y	0.46	31	36	31	36	y	ENSMUSG00000021816.12	Ppp3cb	chr14	protein_coding	protein phosphatase 3, catalytic subunit, beta isoform
known_NIR_5188	chr14	20712533	20714465	-	20712533	20715812	A5SS	ENSMUST00000057090.12	known	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.30	3	7	3	7	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039376.14	Synpo2l	chr14	protein_coding	synaptopodin 2-like
known_NIR_5189	chr14	20724456;20725927	20725799;20726026	+	20724456	20726026	cassetteExon	ENSMUST00000048657.10	known	0.21	6.0	22	0;12	22	n	0.24	4.0	13	1;7	13	n	0.11	5.5	44	2;9	44	y	0.14	4.0	24	0;8	24	n	0.14	6.5	41	5;8	41	y	0.00	0.0	27	0;0	27	n	0.21	8.0	31	2;14	31	y	0.19	6.0	26	1;11	26	n	0.11	2.0	16	0;4	16	n	0.20	5.5	22	1;10	22	n	0.17	3.0	15	0;6	15	n	0.15	4.0	23	3;5	23	y	ENSMUSG00000039367.12	Sec24c	chr14	protein_coding	Sec24 related gene family, member C (S. cerevisiae)
known_NIR_5190	chr14	20724805	20725799	+	20724456	20725799	A5SS	ENSMUST00000224963.2	known	1.00	4	0	4	0	n	0.67	2	1	2	1	n	0.50	2	2	2	2	n	1.00	6	0	6	0	n	0.50	5	5	5	5	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	5	0	5	0	n	0.80	4	1	4	1	n	1.00	2	0	2	0	n	0.57	4	3	4	3	n	ENSMUSG00000039367.12	Sec24c	chr14	protein_coding	Sec24 related gene family, member C (S. cerevisiae)
known_NIR_5191	chr14	20724805	20726026	+	20724456	20726026	A5SS	ENSMUST00000048657.10	known	0.44	17	22	17	22	y	0.57	17	13	17	13	y	0.31	20	44	20	44	y	0.58	33	24	33	24	y	0.41	29	41	29	41	y	0.34	14	27	14	27	y	0.35	17	31	17	31	y	0.28	10	26	10	26	y	0.45	13	16	13	16	y	0.58	31	22	31	22	y	0.44	12	15	12	15	y	0.51	24	23	24	23	y	ENSMUSG00000039367.12	Sec24c	chr14	protein_coding	Sec24 related gene family, member C (S. cerevisiae)
known_NIR_5192	chr14	20724805	20726026	+	20725927	20726026	A5SS&ES	ENSMUST00000224963.2	known	0.59	17	12	17	12	y	0.71	17	7	17	7	y	0.69	20	9	20	9	y	0.80	33	8	33	8	y	0.78	29	8	29	8	y	1.00	14	0	14	0	n	0.55	17	14	17	14	y	0.48	10	11	10	11	y	0.76	13	4	13	4	y	0.76	31	10	31	10	y	0.67	12	6	12	6	y	0.83	24	5	24	5	y	ENSMUSG00000039367.12	Sec24c	chr14	protein_coding	Sec24 related gene family, member C (S. cerevisiae)
known_NIR_5193	chr14	20724805;20725927	20725799;20726026	+	20724805	20726026	cassetteExon	ENSMUST00000225108.2	known	0.32	8.0	17	4;12	17	y	0.21	4.5	17	2;7	17	y	0.22	5.5	20	2;9	20	y	0.17	7.0	33	6;8	33	y	0.18	6.5	29	5;8	29	y	0.03	0.5	14	1;0	14	n	0.29	7.0	17	0;14	17	n	0.35	5.5	10	0;11	10	n	0.26	4.5	13	5;4	13	y	0.18	7.0	31	4;10	31	y	0.25	4.0	12	2;6	12	y	0.16	4.5	24	4;5	24	y	ENSMUSG00000039367.12	Sec24c	chr14	protein_coding	Sec24 related gene family, member C (S. cerevisiae)
known_NIR_5194	chr14	20726225	20732747	+	20726225	20729596	3pMXE	ENSMUST00000224061.2	known	0.00	0	55	0	55	n	0.02	1	43	1	43	n	0.00	0	82	0	82	n	0.01	1	90	1	90	n	0.00	0	106	0	106	n	0.00	0	73	0	73	n	0.03	2	58	2	58	y	0.00	0	57	0	57	n	0.03	1	35	1	35	n	0.01	1	78	1	78	n	0.00	0	42	0	42	n	0.00	0	59	0	59	n	ENSMUSG00000039367.12	Sec24c	chr14	protein_coding	Sec24 related gene family, member C (S. cerevisiae)
known_NIR_5195	chr14	20726225	20732747	+	20726225;20729731	20729596;20732747	ES	ENSMUST00000048657.10	known	0.00	0	54.0	0	55;53	n	0.02	1	40.0	1	43;37	n	0.00	0	85.0	0	82;88	n	0.01	1	83.5	1	90;77	n	0.00	0	102.0	0	106;98	n	0.00	0	70.5	0	73;68	n	0.03	2	74.0	2	58;90	y	0.00	0	54.0	0	57;51	n	0.03	1	34.0	1	35;33	n	0.01	1	77.5	1	78;77	n	0.00	0	50.0	0	42;58	n	0.00	0	65.5	0	59;72	n	ENSMUSG00000039367.12	Sec24c	chr14	protein_coding	Sec24 related gene family, member C (S. cerevisiae)
known_NIR_5196	chr14	20734089;20735348	20735280;20736577	+	20734089	20736577	cassetteExon	ENSMUST00000048657.10	known	0.00	0.0	44	0;0	44	n	0.00	0.0	50	0;0	50	n	0.00	0.0	91	0;0	91	n	0.00	0.0	99	0;0	99	n	0.00	0.0	114	0;0	114	n	0.00	0.0	59	0;0	59	n	0.03	2.5	88	2;3	88	y	0.00	0.0	64	0;0	64	n	0.00	0.0	55	0;0	55	n	0.01	1.0	77	0;2	77	n	0.00	0.0	61	0;0	61	n	0.01	1.0	94	1;1	94	n	ENSMUSG00000039367.12	Sec24c	chr14	protein_coding	Sec24 related gene family, member C (S. cerevisiae)
known_NIR_5197	chr14	20753265	20753344	+	20753265	20753358	A3SS	ENSMUST00000071215.5	known	0.06	14	235	14	235	y	0.04	9	226	9	226	y	0.09	15	145	15	145	y	0.07	14	182	14	182	y	0.05	11	229	11	229	y	0.06	5	84	5	84	y	0.04	11	251	11	251	y	0.07	9	113	9	113	y	0.07	14	178	14	178	y	0.09	26	272	26	272	y	0.08	22	267	22	267	y	0.08	21	239	21	239	y	ENSMUSG00000063787.5	Chchd1	chr14	protein_coding	coiled-coil-helix-coiled-coil-helix domain containing 1
known_NIR_5198	chr14	20766130	20766290	+	20766151	20766290	A5SS	ENSMUST00000022358.9	known	0.13	5	33	5	33	y	0.15	4	23	4	23	y	0.12	5	38	5	38	y	0.08	3	36	3	36	y	0.10	4	36	4	36	y	0.14	3	19	3	19	y	0.17	7	33	7	33	y	0.11	3	24	3	24	y	0.16	3	16	3	16	y	0.21	8	31	8	31	y	0.12	2	15	2	15	y	0.21	7	26	7	26	y	ENSMUSG00000021819.12	Zswim8	chr14	protein_coding	zinc finger SWIM-type containing 8
known_NIR_5199	chr14	20772121	20772211	+	20772097	20772211	A5SS	ENSMUST00000022358.9	known	0.04	3	70	3	70	y	0.09	9	88	9	88	y	0.06	6	102	6	102	y	0.14	9	55	9	55	y	0.08	8	94	8	94	y	0.08	4	45	4	45	y	0.13	15	97	15	97	y	0.09	5	49	5	49	y	0.05	3	55	3	55	y	0.14	14	84	14	84	y	0.13	10	65	10	65	y	0.18	16	75	16	75	y	ENSMUSG00000021819.12	Zswim8	chr14	protein_coding	zinc finger SWIM-type containing 8
known_NIR_5200	chr14	20772647	20772964	+	20772647	20772896	A3SS	ENSMUST00000022358.9	known	0.04	2	44	2	44	y	0.07	4	56	4	56	y	0.03	3	84	3	84	y	0.06	4	62	4	62	y	0.06	4	60	4	60	y	0.05	2	35	2	35	y	0.10	8	75	8	75	y	0.00	0	38	0	38	n	0.00	0	44	0	44	n	0.00	0	51	0	51	n	0.04	2	45	2	45	y	0.00	0	43	0	43	n	ENSMUSG00000021819.12	Zswim8	chr14	protein_coding	zinc finger SWIM-type containing 8
known_NIR_5201	chr14	20774631	20774816	-	20774631	20774779	A5SS	ENSMUST00000223679.2	known	0.13	7	47	7	47	y	0.05	3	52	3	52	y	0.18	9	42	9	42	y	0.13	6	39	6	39	y	0.09	10	98	10	98	y	0.08	3	36	3	36	y	0.10	7	66	7	66	y	0.17	9	43	9	43	y	0.11	7	55	7	55	y	0.08	5	55	5	55	y	0.04	2	49	2	49	y	0.13	9	59	9	59	y	ENSMUSG00000039308.7	Ndst2	chr14	protein_coding	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2
known_NIR_5202	chr14	20778254	20778519	-	20778329	20778519	A3SS	ENSMUST00000223679.2	known	0.07	2	27	2	27	y	0.00	0	22	0	22	n	0.02	1	40	1	40	n	0.00	0	23	0	23	n	0.05	2	38	2	38	y	0.00	0	32	0	32	n	0.00	0	29	0	29	n	0.08	2	24	2	24	y	0.13	4	26	4	26	y	0.03	1	38	1	38	n	0.00	0	29	0	29	n	0.04	2	43	2	43	y	ENSMUSG00000039308.7	Ndst2	chr14	protein_coding	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2
known_NIR_5203	chr14	20787571	20788909	-	20787571	20788917	A5SS	ENSMUST00000100837.11	known	0.22	2	7	2	7	n	0.00	0	4	0	4	n	0.00	0	15	0	15	n	0.00	0	15	0	15	n	0.25	4	12	4	12	y	0.00	0	9	0	9	n	0.00	0	22	0	22	n	0.12	1	7	1	7	n	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	16	0	16	n	ENSMUSG00000021820.19	Camk2g	chr14	protein_coding	calcium/calmodulin-dependent protein kinase II gamma
known_NIR_5204	chr14	20789470	20792773	-	20791559	20792773	3pMXE	ENSMUST00000225463.2	known	0.86	6	1	6	1	n	0.75	6	2	6	2	n	0.94	15	1	15	1	n	0.86	19	3	19	3	y	0.83	19	4	19	4	y	0.62	5	3	5	3	n	0.84	31	6	31	6	y	0.64	7	4	7	4	y	1.00	17	0	17	0	n	0.77	10	3	10	3	y	0.88	14	2	14	2	y	0.90	28	3	28	3	y	ENSMUSG00000021820.19	Camk2g	chr14	protein_coding	calcium/calmodulin-dependent protein kinase II gamma
known_NIR_5205	chr14	20789470;20791559	20791446;20792773	-	20789470	20792773	cassetteExon	ENSMUST00000100837.11	known	0.20	1.5	6	2;1	6	n	0.14	1.0	6	0;2	6	n	0.14	2.5	15	4;1	15	n	0.17	4.0	19	5;3	19	y	0.24	6.0	19	8;4	19	y	0.33	2.5	5	2;3	5	y	0.16	6.0	31	6;6	31	y	0.39	4.5	7	5;4	7	y	0.06	1.0	17	2;0	17	n	0.35	5.5	10	8;3	10	y	0.07	1.0	14	0;2	14	n	0.12	4.0	28	5;3	28	y	ENSMUSG00000021820.19	Camk2g	chr14	protein_coding	calcium/calmodulin-dependent protein kinase II gamma
known_NIR_5206	chr14	20794716;20795928	20795860;20805727	-	20794716	20805727	cassetteExon	ENSMUST00000100837.11	known	0.20	2.5	10	1;4	10	n	0.09	0.5	5	0;1	5	n	0.33	3.0	6	2;4	6	y	0.20	2.0	8	1;3	8	n	0.19	5.5	23	6;5	23	y	0.37	3.5	6	4;3	6	y	0.32	7.5	16	6;9	16	y	0.10	1.5	13	0;3	13	n	0.18	2.0	9	4;0	9	n	0.12	2.5	18	1;4	18	n	0.09	1.5	15	1;2	15	n	0.28	3.5	9	4;3	9	y	ENSMUSG00000021820.19	Camk2g	chr14	protein_coding	calcium/calmodulin-dependent protein kinase II gamma
known_NIR_5207	chr14	20805770;20807796	20807734;20810212	-	20805770	20810212	cassetteExon	ENSMUST00000100837.11	known	0.00	0.0	14	0;0	14	n	0.00	0.0	12	0;0	12	n	0.00	0.0	11	0;0	11	n	0.00	0.0	14	0;0	14	n	0.00	0.0	26	0;0	26	n	0.00	0.0	10	0;0	10	n	0.11	3.5	29	3;4	29	y	0.00	0.0	16	0;0	16	n	0.00	0.0	14	0;0	14	n	0.00	0.0	18	0;0	18	n	0.00	0.0	17	0;0	17	n	0.00	0.0	14	0;0	14	n	ENSMUSG00000021820.19	Camk2g	chr14	protein_coding	calcium/calmodulin-dependent protein kinase II gamma
known_NIR_5208	chr14	20814336	20815464	-	20814336	20814929	5pMXE	ENSMUST00000223712.2	known	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.05	1	18	1	18	n	0.00	0	20	0	20	n	0.09	2	20	2	20	y	0.00	0	3	0	3	n	0.10	1	9	1	9	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	ENSMUSG00000021820.19	Camk2g	chr14	protein_coding	calcium/calmodulin-dependent protein kinase II gamma
known_NIR_5209	chr14	20814336	20815464	-	20814336;20815023	20814929;20815464	ES	ENSMUST00000100837.11	known	0.00	0	7.5	0	7;8	n	0.00	0	4.5	0	2;7	n	0.07	1	13.5	1	18;9	n	0.00	0	15.5	0	20;11	n	0.11	2	17.0	2	20;14	y	0.00	0	5.5	0	3;8	n	0.08	1	12.0	1	9;15	n	0.00	0	11.0	0	13;9	n	0.00	0	9.0	0	10;8	n	0.00	0	15.5	0	13;18	n	0.00	0	8.5	0	8;9	n	0.00	0	12.0	0	14;10	n	ENSMUSG00000021820.19	Camk2g	chr14	protein_coding	calcium/calmodulin-dependent protein kinase II gamma
known_NIR_5210	chr14	20820197	20829272	-	20820197;20821129	20821075;20829272	ES	ENSMUST00000100837.11	known	0.28	4	10.5	4	12;9	y	0.00	0	17.5	0	14;21	n	0.13	3	20.0	3	15;25	y	0.24	6	18.5	6	16;21	y	0.07	2	28.5	2	27;30	y	0.08	1	12.0	1	12;12	n	0.00	0	22.5	0	16;29	n	0.00	0	13.5	0	13;14	n	0.04	1	21.5	1	17;26	n	0.04	1	23.0	1	24;22	n	0.00	0	11.0	0	11;11	n	0.05	1	20.5	1	18;23	n	ENSMUSG00000021820.19	Camk2g	chr14	protein_coding	calcium/calmodulin-dependent protein kinase II gamma
known_NIR_5211	chr14	21091158	21094721	-	21091158	21102208	A5SS	ENSMUST00000156716.2	known	0.98	103	2	103	2	y	1.00	85	0	85	0	n	0.97	125	4	125	4	y	0.98	122	3	122	3	y	0.99	130	1	130	1	n	0.97	59	2	59	2	y	0.99	162	1	162	1	n	1.00	98	0	98	0	n	1.00	92	0	92	0	n	1.00	132	0	132	0	n	0.99	73	1	73	1	n	1.00	103	0	103	0	n	ENSMUSG00000021824.14	Ap3m1	chr14	protein_coding	adaptor-related protein complex 3, mu 1 subunit
known_NIR_5212	chr14	21091158	21095556	-	21091158;21094892	21094721;21095556	ES	ENSMUST00000154460.8	known	0.03	3	109.0	3	103;115	y	0.05	4	81.5	4	85;78	y	0.03	4	122.0	4	125;119	y	0.01	2	134.5	2	122;147	y	0.02	2	128.0	2	130;126	y	0.00	0	64.0	0	59;69	n	0.04	7	150.5	7	162;139	y	0.00	0	91.5	0	98;85	n	0.01	1	87.0	1	92;82	n	0.02	3	130.0	3	132;128	y	0.01	1	73.5	1	73;74	n	0.01	1	113.5	1	103;124	n	ENSMUSG00000021824.14	Ap3m1	chr14	protein_coding	adaptor-related protein complex 3, mu 1 subunit
known_NIR_5213	chr14	21091158	21095556	-	21094892	21095556	3pMXE	ENSMUST00000130370.3	known	0.03	3	115	3	115	y	0.05	4	78	4	78	y	0.03	4	119	4	119	y	0.01	2	147	2	147	y	0.02	2	126	2	126	y	0.00	0	69	0	69	n	0.05	7	139	7	139	y	0.00	0	85	0	85	n	0.01	1	82	1	82	n	0.02	3	128	3	128	y	0.01	1	74	1	74	n	0.01	1	124	1	124	n	ENSMUSG00000021824.14	Ap3m1	chr14	protein_coding	adaptor-related protein complex 3, mu 1 subunit
known_NIR_5214	chr14	21091158	21102208	-	21091158;21095831	21095556;21102208	ES	ENSMUST00000126536.8	known	0.07	2	28.0	2	3;53	y	0.00	0	17.5	0	4;31	n	0.11	4	31.5	4	4;59	y	0.10	3	26.0	3	2;50	y	0.03	1	33.5	1	2;65	n	0.11	2	16.0	2	0;32	n	0.03	1	29.0	1	7;51	n	0.00	0	16.0	0	0;32	n	0.00	0	16.5	0	1;32	n	0.00	0	16.5	0	3;30	n	0.05	1	19.0	1	1;37	n	0.00	0	20.5	0	1;40	n	ENSMUSG00000021824.14	Ap3m1	chr14	protein_coding	adaptor-related protein complex 3, mu 1 subunit
known_NIR_5215	chr14	21095831	21101964	-	21095831	21102208	A5SS	ENSMUST00000154460.8	known	0.05	3	53	3	53	y	0.09	3	31	3	31	y	0.13	9	59	9	59	y	0.04	2	50	2	50	y	0.08	6	65	6	65	y	0.09	3	32	3	32	y	0.06	3	51	3	51	y	0.20	8	32	8	32	y	0.11	4	32	4	32	y	0.30	13	30	13	30	y	0.12	5	37	5	37	y	0.09	4	40	4	40	y	ENSMUSG00000021824.14	Ap3m1	chr14	protein_coding	adaptor-related protein complex 3, mu 1 subunit
known_NIR_5216	chr14	21095831	21102523	-	21095831	21101964	5pMXE	ENSMUST00000148886.2	known	0.57	4	3	4	3	n	0.70	7	3	7	3	y	0.44	7	9	7	9	y	0.80	8	2	8	2	y	0.45	5	6	5	6	y	0.62	5	3	5	3	n	0.77	10	3	10	3	y	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.48	12	13	12	13	y	0.44	4	5	4	5	n	0.67	8	4	8	4	y	ENSMUSG00000021824.14	Ap3m1	chr14	protein_coding	adaptor-related protein complex 3, mu 1 subunit
known_NIR_5217	chr14	21095831	21102523	-	21095831	21102208	5pMXE	ENSMUST00000154460.8	known	0.07	4	53	4	53	y	0.18	7	31	7	31	y	0.11	7	59	7	59	y	0.14	8	50	8	50	y	0.07	5	65	5	65	y	0.14	5	32	5	32	y	0.16	10	51	10	51	y	0.00	0	32	0	32	n	0.00	0	32	0	32	n	0.29	12	30	12	30	y	0.10	4	37	4	37	y	0.17	8	40	8	40	y	ENSMUSG00000021824.14	Ap3m1	chr14	protein_coding	adaptor-related protein complex 3, mu 1 subunit
known_NIR_5218	chr14	21102768	21104013	+	21102768	21103790	3pMXE	ENSMUST00000223558.2	known	0.02	1	46	1	46	n	0.08	5	59	5	59	y	0.02	4	182	4	182	y	0.14	9	57	9	57	y	0.11	12	102	12	102	y	0.11	8	65	8	65	y	0.09	9	93	9	93	y	0.15	11	64	11	64	y	0.19	11	47	11	47	y	0.20	16	65	16	65	y	0.03	2	64	2	64	y	0.05	4	82	4	82	y	ENSMUSG00000039197.11	Adk	chr14	protein_coding	adenosine kinase
known_NIR_5219	chr14	21102768	21142435	+	21102768	21103790	3pMXE	ENSMUST00000223558.2	known	0.83	231	46	231	46	y	0.75	178	59	178	59	y	0.61	283	182	283	182	y	0.81	251	57	251	57	y	0.77	347	102	347	102	y	0.73	178	65	178	65	y	0.77	306	93	306	93	y	0.77	212	64	212	64	y	0.84	247	47	247	47	y	0.83	325	65	325	65	y	0.79	238	64	238	64	y	0.79	306	82	306	82	y	ENSMUSG00000039197.11	Adk	chr14	protein_coding	adenosine kinase
known_NIR_5220	chr14	21102768	21142435	+	21102768	21104013	3pMXE	ENSMUST00000223641.2	known	1.00	231	1	231	1	n	0.97	178	5	178	5	y	0.99	283	4	283	4	y	0.97	251	9	251	9	y	0.97	347	12	347	12	y	0.96	178	8	178	8	y	0.97	306	9	306	9	y	0.95	212	11	212	11	y	0.96	247	11	247	11	y	0.95	325	16	325	16	y	0.99	238	2	238	2	y	0.99	306	4	306	4	y	ENSMUSG00000039197.11	Adk	chr14	protein_coding	adenosine kinase
known_NIR_5221	chr14	21102768	21142435	+	21104084	21142435	5pMXE	ENSMUST00000224899.2	known	1.00	231	1	231	1	n	0.96	178	7	178	7	y	0.98	283	6	283	6	y	0.97	251	7	251	7	y	0.98	347	7	347	7	y	0.98	178	4	178	4	y	0.97	306	9	306	9	y	0.98	212	5	212	5	y	0.97	247	8	247	8	y	0.98	325	6	325	6	y	0.98	238	6	238	6	y	0.97	306	9	306	9	y	ENSMUSG00000039197.11	Adk	chr14	protein_coding	adenosine kinase
known_NIR_5222	chr14	21102768;21104084	21103790;21142435	+	21102768	21142435	cassetteExon	ENSMUST00000045376.11	known	0.09	23.5	231	46;1	231	n	0.16	33.0	178	59;7	178	y	0.25	94.0	283	182;6	283	y	0.11	32.0	251	57;7	251	y	0.14	54.5	347	102;7	347	y	0.16	34.5	178	65;4	178	y	0.14	51.0	306	93;9	306	y	0.14	34.5	212	64;5	212	y	0.10	27.5	247	47;8	247	y	0.10	35.5	325	65;6	325	y	0.13	35.0	238	64;6	238	y	0.13	45.5	306	82;9	306	y	ENSMUSG00000039197.11	Adk	chr14	protein_coding	adenosine kinase
known_NIR_5223	chr14	21102768;21104084	21104013;21142435	+	21102768	21142435	cassetteExon	ENSMUST00000045376.11	known	0.00	1.0	231	1;1	231	n	0.03	6.0	178	5;7	178	y	0.02	5.0	283	4;6	283	y	0.03	8.0	251	9;7	251	y	0.03	9.5	347	12;7	347	y	0.03	6.0	178	8;4	178	y	0.03	9.0	306	9;9	306	y	0.04	8.0	212	11;5	212	y	0.04	9.5	247	11;8	247	y	0.03	11.0	325	16;6	325	y	0.02	4.0	238	2;6	238	y	0.02	6.5	306	4;9	306	y	ENSMUSG00000039197.11	Adk	chr14	protein_coding	adenosine kinase
known_NIR_5224	chr14	21126389	21142435	+	21102768	21142435	A5SS	ENSMUST00000045376.11	known	0.78	804	231	804	231	y	0.77	583	178	583	178	y	0.81	1236	283	1236	283	y	0.81	1040	251	1040	251	y	0.81	1468	347	1468	347	y	0.81	749	178	749	178	y	0.77	1053	306	1053	306	y	0.80	868	212	868	212	y	0.72	644	247	644	247	y	0.76	1022	325	1022	325	y	0.74	678	238	678	238	y	0.79	1157	306	1157	306	y	ENSMUSG00000039197.11	Adk	chr14	protein_coding	adenosine kinase
known_NIR_5225	chr14	21126389	21142435	+	21104084	21142435	A5SS	ENSMUST00000224899.2	known	1.00	804	1	804	1	n	0.99	583	7	583	7	y	1.00	1236	6	1236	6	y	0.99	1040	7	1040	7	y	1.00	1468	7	1468	7	y	0.99	749	4	749	4	y	0.99	1053	9	1053	9	y	0.99	868	5	868	5	y	0.99	644	8	644	8	y	0.99	1022	6	1022	6	y	0.99	678	6	678	6	y	0.99	1157	9	1157	9	y	ENSMUSG00000039197.11	Adk	chr14	protein_coding	adenosine kinase
known_NIR_5226	chr14	21290639	21419139	+	21290639	21368081	3pMXE	ENSMUST00000225742.2	known	0.01	11	1412	11	1412	y	0.01	8	1109	8	1109	y	0.01	12	1695	12	1695	y	0.01	15	1448	15	1448	y	0.01	15	2073	15	2073	y	0.01	6	1079	6	1079	y	0.01	16	1602	16	1602	y	0.01	9	1251	9	1251	y	0.01	11	1163	11	1163	y	0.01	13	1648	13	1648	y	0.01	7	1058	7	1058	y	0.01	9	1764	9	1764	y	ENSMUSG00000039197.11	Adk	chr14	protein_coding	adenosine kinase
known_NIR_5227	chr14	21290639	21419139	+	21290639;21368251	21368081;21419139	ES	ENSMUST00000045376.11	known	0.01	11	1612.5	11	1412;1813	y	0.01	8	1335.5	8	1109;1562	y	0.01	12	1935.5	12	1695;2176	y	0.01	15	1717.5	15	1448;1987	y	0.01	15	2386.0	15	2073;2699	y	0.01	6	1192.5	6	1079;1306	y	0.01	16	1975.5	16	1602;2349	y	0.01	9	1407.0	9	1251;1563	y	0.01	11	1316.5	11	1163;1470	y	0.01	13	1931.0	13	1648;2214	y	0.01	7	1281.5	7	1058;1505	y	0.00	9	2042.5	9	1764;2321	y	ENSMUSG00000039197.11	Adk	chr14	protein_coding	adenosine kinase
known_NIR_5228	chr14	21368251	21376660	+	21368251	21419139	A3SS	ENSMUST00000045376.11	known	0.02	45	1813	45	1813	y	0.02	32	1562	32	1562	y	0.02	43	2176	43	2176	y	0.01	22	1987	22	1987	y	0.01	34	2699	34	2699	y	0.02	29	1306	29	1306	y	0.01	35	2349	35	2349	y	0.01	23	1563	23	1563	y	0.01	16	1470	16	1470	y	0.01	24	2214	24	2214	y	0.01	22	1505	22	1505	y	0.01	34	2321	34	2321	y	ENSMUSG00000039197.11	Adk	chr14	protein_coding	adenosine kinase
known_NIR_5229	chr14	21419174	21419807	+	21419174	21431571	A3SS	ENSMUST00000045376.11	known	0.00	2	1629	2	1629	y	0.00	0	1441	0	1441	n	0.00	2	1930	2	1930	y	0.00	0	1709	0	1709	n	0.00	0	2447	0	2447	n	0.00	0	1177	0	1177	n	0.00	0	2082	0	2082	n	0.00	0	1370	0	1370	n	0.00	0	1294	0	1294	n	0.00	0	2024	0	2024	n	0.00	0	1344	0	1344	n	0.00	2	2165	2	2165	y	ENSMUSG00000039197.11	Adk	chr14	protein_coding	adenosine kinase
known_NIR_5230	chr14	21675283	21676787	+	21674956	21676787	A5SS	ENSMUST00000182855.8	known	0.00	0	1	0	1	n	-	-	-	-	-	-	0.58	7	5	7	5	y	0.88	7	1	7	1	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.50	2	2	2	2	n	0.44	4	5	4	5	n	0.00	0	2	0	2	n	0.60	3	2	3	2	n	0.00	0	2	0	2	n	1.00	4	0	4	0	n	ENSMUSG00000021767.20	Kat6b	chr14	protein_coding	K(lysine) acetyltransferase 6B
known_NIR_5231	chr14	21800904	21825031	+	21800848	21825031	A5SS	ENSMUST00000022292.10	known	0.86	6	1	6	1	n	0.00	0	2	0	2	n	0.79	15	4	15	4	y	0.67	10	5	10	5	y	0.74	14	5	14	5	y	0.58	7	5	7	5	y	0.67	8	4	8	4	y	0.61	11	7	11	7	y	0.00	0	5	0	5	n	0.38	3	5	3	5	n	0.57	4	3	4	3	n	0.56	9	7	9	7	y	ENSMUSG00000021770.12	Samd8	chr14	protein_coding	sterile alpha motif domain containing 8
known_NIR_5232	chr14	21801672	21825031	+	21800848	21825031	A5SS	ENSMUST00000022292.10	known	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.38	3	5	3	5	n	0.17	1	5	1	5	n	0.17	1	5	1	5	n	0.33	2	4	2	4	n	0.30	3	7	3	7	y	0.00	0	5	0	5	n	0.29	2	5	2	5	n	0.00	0	3	0	3	n	0.42	5	7	5	7	y	ENSMUSG00000021770.12	Samd8	chr14	protein_coding	sterile alpha motif domain containing 8
known_NIR_5233	chr14	21801672	21825031	+	21800904	21825031	A5SS	ENSMUST00000144061.2	known	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	15	0	15	n	0.23	3	10	3	10	y	0.07	1	14	1	14	n	0.12	1	7	1	7	n	0.20	2	8	2	8	y	0.21	3	11	3	11	y	-	-	-	-	-	-	0.40	2	3	2	3	n	0.00	0	4	0	4	n	0.36	5	9	5	9	y	ENSMUSG00000021770.12	Samd8	chr14	protein_coding	sterile alpha motif domain containing 8
known_NIR_5234	chr14	21881735	21882952	+	21881735;21881977	21881919;21882952	ES	ENSMUST00000022293.14	known	0.00	0	115.5	0	92;139	n	0.00	0	116.0	0	92;140	n	0.00	0	191.0	0	153;229	n	0.00	0	186.5	0	155;218	n	0.00	0	208.5	0	184;233	n	0.00	0	101.5	0	88;115	n	0.00	0	175.5	0	142;209	n	0.00	0	100.5	0	77;124	n	0.00	0	115.0	0	81;149	n	0.00	0	203.5	0	165;242	n	0.01	2	161.0	2	152;170	y	0.00	0	192.5	0	152;233	n	ENSMUSG00000021771.15	Vdac2	chr14	protein_coding	voltage-dependent anion channel 2
known_NIR_5235	chr14	21881735	21882952	+	21881977	21882952	A5SS&ES	ENSMUST00000224373.2	known	0.00	0	139	0	139	n	0.00	0	140	0	140	n	0.00	0	229	0	229	n	0.00	0	218	0	218	n	0.00	0	233	0	233	n	0.00	0	115	0	115	n	0.00	0	209	0	209	n	0.00	0	124	0	124	n	0.00	0	149	0	149	n	0.00	0	242	0	242	n	0.01	2	170	2	170	y	0.00	0	233	0	233	n	ENSMUSG00000021771.15	Vdac2	chr14	protein_coding	voltage-dependent anion channel 2
known_NIR_5236	chr14	24519511	24520602	-	24519497	24520602	A3SS	ENSMUST00000026322.9	known	0.15	2	11	2	11	y	0.00	0	5	0	5	n	0.06	1	16	1	16	n	0.11	3	24	3	24	y	0.10	3	28	3	28	y	0.00	0	13	0	13	n	0.06	1	16	1	16	n	0.00	0	12	0	12	n	0.14	2	12	2	12	y	0.06	1	16	1	16	n	0.00	0	12	0	12	n	0.03	1	29	1	29	n	ENSMUSG00000025280.9	Polr3a	chr14	protein_coding	polymerase (RNA) III (DNA directed) polypeptide A
known_NIR_5237	chr14	24540826	24541818	+	24537266	24541818	A5SS	ENSMUST00000223931.2	known	1.00	1014	1	1014	1	n	1.00	1123	1	1123	1	n	1.00	1363	0	1363	0	n	1.00	890	1	890	1	n	1.00	1302	0	1302	0	n	1.00	697	0	697	0	n	1.00	1493	2	1493	2	y	1.00	782	0	782	0	n	1.00	899	3	899	3	y	1.00	1312	4	1312	4	y	1.00	1124	1	1124	1	n	1.00	1215	0	1215	0	n	ENSMUSG00000025290.18	Rps24	chr14	protein_coding	ribosomal protein S24
known_NIR_5238	chr14	24541092	24541818	+	24537266	24541818	A5SS	ENSMUST00000223931.2	known	0.94	16	1	16	1	n	0.92	11	1	11	1	n	1.00	9	0	9	0	n	0.94	16	1	16	1	n	1.00	13	0	13	0	n	1.00	5	0	5	0	n	0.89	17	2	17	2	y	1.00	6	0	6	0	n	0.77	10	3	10	3	y	0.83	20	4	20	4	y	0.94	16	1	16	1	n	1.00	13	0	13	0	n	ENSMUSG00000025290.18	Rps24	chr14	protein_coding	ribosomal protein S24
known_NIR_5239	chr14	24541092	24541818	+	24540826	24541818	A5SS	ENSMUST00000112384.10	known	0.02	16	1014	16	1014	y	0.01	11	1123	11	1123	y	0.01	9	1363	9	1363	y	0.02	16	890	16	890	y	0.01	13	1302	13	1302	y	0.01	5	697	5	697	y	0.01	17	1493	17	1493	y	0.01	6	782	6	782	y	0.01	10	899	10	899	y	0.02	20	1312	20	1312	y	0.01	16	1124	16	1124	y	0.01	13	1215	13	1215	y	ENSMUSG00000025290.18	Rps24	chr14	protein_coding	ribosomal protein S24
known_NIR_5240	chr14	24541258	24541818	+	24537266	24541818	A5SS	ENSMUST00000223931.2	known	0.90	9	1	9	1	n	0.91	10	1	10	1	n	1.00	5	0	5	0	n	0.91	10	1	10	1	n	1.00	8	0	8	0	n	1.00	5	0	5	0	n	0.80	8	2	8	2	y	1.00	3	0	3	0	n	0.62	5	3	5	3	n	0.69	9	4	9	4	y	0.89	8	1	8	1	n	1.00	7	0	7	0	n	ENSMUSG00000025290.18	Rps24	chr14	protein_coding	ribosomal protein S24
known_NIR_5241	chr14	24541258	24541818	+	24540826	24541818	A5SS	ENSMUST00000112384.10	known	0.01	9	1014	9	1014	y	0.01	10	1123	10	1123	y	0.00	5	1363	5	1363	y	0.01	10	890	10	890	y	0.01	8	1302	8	1302	y	0.01	5	697	5	697	y	0.01	8	1493	8	1493	y	0.00	3	782	3	782	y	0.01	5	899	5	899	y	0.01	9	1312	9	1312	y	0.01	8	1124	8	1124	y	0.01	7	1215	7	1215	y	ENSMUSG00000025290.18	Rps24	chr14	protein_coding	ribosomal protein S24
known_NIR_5242	chr14	24541258	24541818	+	24541092	24541818	A5SS	ENSMUST00000224568.2	known	0.36	9	16	9	16	y	0.48	10	11	10	11	y	0.36	5	9	5	9	y	0.38	10	16	10	16	y	0.38	8	13	8	13	y	0.50	5	5	5	5	y	0.32	8	17	8	17	y	0.33	3	6	3	6	n	0.33	5	10	5	10	y	0.31	9	20	9	20	y	0.33	8	16	8	16	y	0.35	7	13	7	13	y	ENSMUSG00000025290.18	Rps24	chr14	protein_coding	ribosomal protein S24
known_NIR_5243	chr14	24541258	24541818	+	24541529	24541818	A5SS	ENSMUST00000224549.2	known	1.00	9	0	9	0	n	0.91	10	1	10	1	n	1.00	5	0	5	0	n	0.83	10	2	10	2	y	1.00	8	0	8	0	n	1.00	5	0	5	0	n	1.00	8	0	8	0	n	1.00	3	0	3	0	n	0.83	5	1	5	1	n	1.00	9	0	9	0	n	1.00	8	0	8	0	n	1.00	7	0	7	0	n	ENSMUSG00000025290.18	Rps24	chr14	protein_coding	ribosomal protein S24
known_NIR_5244	chr14	24541529	24541818	+	24540826	24541818	A5SS	ENSMUST00000112384.10	known	0.00	0	1014	0	1014	n	0.00	1	1123	1	1123	n	0.00	0	1363	0	1363	n	0.00	2	890	2	890	y	0.00	0	1302	0	1302	n	0.00	0	697	0	697	n	0.00	0	1493	0	1493	n	0.00	0	782	0	782	n	0.00	1	899	1	899	n	0.00	0	1312	0	1312	n	0.00	0	1124	0	1124	n	0.00	0	1215	0	1215	n	ENSMUSG00000025290.18	Rps24	chr14	protein_coding	ribosomal protein S24
known_NIR_5245	chr14	24541529	24541818	+	24541092	24541818	A5SS	ENSMUST00000224568.2	known	0.00	0	16	0	16	n	0.08	1	11	1	11	n	0.00	0	9	0	9	n	0.11	2	16	2	16	y	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	17	0	17	n	0.00	0	6	0	6	n	0.09	1	10	1	10	n	0.00	0	20	0	20	n	0.00	0	16	0	16	n	0.00	0	13	0	13	n	ENSMUSG00000025290.18	Rps24	chr14	protein_coding	ribosomal protein S24
known_NIR_5246	chr14	24543561	24543685	+	24543561	24544120	A3SS	ENSMUST00000223999.2	known	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.18	2	9	2	9	y	0.00	0	8	0	8	n	0.00	0	90	0	90	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	20	0	20	n	0.00	0	10	0	10	n	0.00	0	23	0	23	n	ENSMUSG00000025290.18	Rps24	chr14	protein_coding	ribosomal protein S24
known_NIR_5247	chr14	24543561	24543685	+	24543561	24545843	A3SS	ENSMUST00000225023.2	known	0.00	0	1606	0	1606	n	0.00	0	1815	0	1815	n	0.00	0	1981	0	1981	n	0.00	0	1190	0	1190	n	0.00	2	1827	2	1827	y	0.00	0	1037	0	1037	n	0.00	0	2049	0	2049	n	0.00	0	1073	0	1073	n	0.00	0	1292	0	1292	n	0.00	0	1909	0	1909	n	0.00	0	1741	0	1741	n	0.00	0	1791	0	1791	n	ENSMUSG00000025290.18	Rps24	chr14	protein_coding	ribosomal protein S24
known_NIR_5248	chr14	24543561	24544120	+	24543561	24545843	A3SS	ENSMUST00000225023.2	known	0.01	12	1606	12	1606	y	0.01	15	1815	15	1815	y	0.00	2	1981	2	1981	y	0.01	8	1190	8	1190	y	0.00	9	1827	9	1827	y	0.01	8	1037	8	1037	y	0.04	90	2049	90	2049	y	0.01	7	1073	7	1073	y	0.00	3	1292	3	1292	y	0.01	20	1909	20	1909	y	0.01	10	1741	10	1741	y	0.01	23	1791	23	1791	y	ENSMUSG00000025290.18	Rps24	chr14	protein_coding	ribosomal protein S24
known_NIR_5249	chr14	24543561	24545498	+	24543561	24543685	3pMXE	ENSMUST00000225117.2	known	1.00	37	0	37	0	n	1.00	58	0	58	0	n	1.00	26	0	26	0	n	1.00	46	0	46	0	n	0.95	40	2	40	2	y	1.00	13	0	13	0	n	1.00	81	0	81	0	n	1.00	23	0	23	0	n	1.00	35	0	35	0	n	1.00	47	0	47	0	n	1.00	37	0	37	0	n	1.00	53	0	53	0	n	ENSMUSG00000025290.18	Rps24	chr14	protein_coding	ribosomal protein S24
known_NIR_5250	chr14	24543561	24545843	+	24543561	24545498	3pMXE	ENSMUST00000112384.10	known	0.98	1606	37	1606	37	y	0.97	1815	58	1815	58	y	0.99	1981	26	1981	26	y	0.96	1190	46	1190	46	y	0.98	1827	40	1827	40	y	0.99	1037	13	1037	13	y	0.96	2049	81	2049	81	y	0.98	1073	23	1073	23	y	0.97	1292	35	1292	35	y	0.98	1909	47	1909	47	y	0.98	1741	37	1741	37	y	0.97	1791	53	1791	53	y	ENSMUSG00000025290.18	Rps24	chr14	protein_coding	ribosomal protein S24
known_NIR_5251	chr14	24543561	24545843	+	24543561;24545517	24545498;24545843	ES	ENSMUST00000169826.3	known	0.98	1606	36.0	1606	37;35	y	0.97	1815	57.5	1815	58;57	y	0.99	1981	26.0	1981	26;26	y	0.97	1190	41.5	1190	46;37	y	0.98	1827	39.0	1827	40;38	y	0.99	1037	14.0	1037	13;15	y	0.95	2049	103.5	2049	81;126	y	0.98	1073	24.5	1073	23;26	y	0.97	1292	36.0	1292	35;37	y	0.97	1909	54.5	1909	47;62	y	0.98	1741	39.5	1741	37;42	y	0.97	1791	55.5	1791	53;58	y	ENSMUSG00000025290.18	Rps24	chr14	protein_coding	ribosomal protein S24
known_NIR_5252	chr14	24543561;24544137	24543685;24545498	+	24543561	24545498	cassetteExon	ENSMUST00000112384.10	known	0.12	5.0	37	0;10	37	n	0.10	6.5	58	0;13	58	n	0.04	1.0	26	0;2	26	n	0.05	2.5	46	0;5	46	n	0.08	3.5	40	2;5	40	y	0.16	2.5	13	0;5	13	n	0.31	36.0	81	0;72	81	n	0.13	3.5	23	0;7	23	n	0.03	1.0	35	0;2	35	n	0.12	6.5	47	0;13	47	n	0.14	6.0	37	0;12	37	n	0.15	9.0	53	0;18	53	n	ENSMUSG00000025290.18	Rps24	chr14	protein_coding	ribosomal protein S24
known_NIR_5253	chr14	24543561;24544137	24544120;24545498	+	24543561	24545498	cassetteExon	ENSMUST00000112384.10	known	0.23	11.0	37	12;10	37	y	0.19	14.0	58	15;13	58	y	0.07	2.0	26	2;2	26	y	0.12	6.5	46	8;5	46	y	0.15	7.0	40	9;5	40	y	0.33	6.5	13	8;5	13	y	0.50	81.0	81	90;72	81	y	0.23	7.0	23	7;7	23	y	0.07	2.5	35	3;2	35	y	0.26	16.5	47	20;13	47	y	0.23	11.0	37	10;12	37	y	0.28	20.5	53	23;18	53	y	ENSMUSG00000025290.18	Rps24	chr14	protein_coding	ribosomal protein S24
known_NIR_5254	chr14	25646281	25647159	+	25646281	25647141	A3SS	ENSMUST00000162645.8	known	0.50	2	2	2	2	n	0.56	5	4	5	4	n	0.36	5	9	5	9	y	0.20	3	12	3	12	y	0.18	2	9	2	9	y	0.00	0	6	0	6	n	0.38	9	15	9	15	y	0.75	6	2	6	2	n	0.46	6	7	6	7	y	0.30	3	7	3	7	y	0.44	4	5	4	5	n	0.33	1	2	1	2	n	ENSMUSG00000007817.16	Zmiz1	chr14	protein_coding	zinc finger, MIZ-type containing 1
known_NIR_5255	chr14	25891279	25902705	-	25891279	25903210	A5SS	ENSMUST00000052286.16	known	0.00	0	19	0	19	n	0.15	7	40	7	40	y	0.08	6	73	6	73	y	0.00	0	30	0	30	n	0.01	1	75	1	75	n	0.00	0	30	0	30	n	0.14	7	43	7	43	y	0.15	4	22	4	22	y	0.07	2	25	2	25	y	0.00	0	41	0	41	n	0.04	2	47	2	47	y	0.00	0	40	0	40	n	ENSMUSG00000095304.10	Plac9a	chr14	protein_coding	placenta specific 9a
known_NIR_5256	chr14	25891279	25902803	-	25891279	25903210	A5SS	ENSMUST00000052286.16	known	0.00	0	19	0	19	n	0.00	0	40	0	40	n	0.04	3	73	3	73	y	0.03	1	30	1	30	n	0.00	0	75	0	75	n	0.03	1	30	1	30	n	0.00	0	43	0	43	n	0.00	0	22	0	22	n	0.00	0	25	0	25	n	0.00	0	41	0	41	n	0.00	0	47	0	47	n	0.05	2	40	2	40	y	ENSMUSG00000095304.10	Plac9a	chr14	protein_coding	placenta specific 9a
known_NIR_5257	chr14	25926005	25926114	-	25926005	25926222	A5SS	ENSMUST00000185006.9	known	0.00	0	1155	0	1155	n	0.00	0	1067	0	1067	n	0.00	0	845	0	845	n	0.00	2	1217	2	1217	y	0.00	0	1623	0	1623	n	0.00	0	727	0	727	n	0.00	1	1806	1	1806	n	0.00	0	805	0	805	n	0.00	5	1070	5	1070	y	0.00	1	1815	1	1815	n	0.00	0	1313	0	1313	n	0.00	0	1287	0	1287	n	ENSMUSG00000072676.13	Tmem254a	chr14	protein_coding	transmembrane protein 254a
known_NIR_5258	chr14	25926325	25927469	-	25926325	25927722	A5SS	ENSMUST00000185006.9	known	0.04	46	1077	46	1077	y	0.04	41	1034	41	1034	y	0.05	42	763	42	763	y	0.04	53	1152	53	1152	y	0.05	81	1646	81	1646	y	0.04	30	775	30	775	y	0.04	63	1587	63	1587	y	0.02	19	880	19	880	y	0.04	45	1111	45	1111	y	0.04	70	1815	70	1815	y	0.03	42	1249	42	1249	y	0.04	53	1171	53	1171	y	ENSMUSG00000072676.13	Tmem254a	chr14	protein_coding	transmembrane protein 254a
known_NIR_5259	chr14	25943024	25952340	+	25938818	25952340	A5SS	ENSMUST00000183436.2	known	0.60	6	4	6	4	y	0.33	1	2	1	2	n	0.46	6	7	6	7	y	0.90	9	1	9	1	n	0.62	5	3	5	3	n	0.50	2	2	2	2	n	0.70	7	3	7	3	y	1.00	6	0	6	0	n	0.80	4	1	4	1	n	0.75	3	1	3	1	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	ENSMUSG00000095975.4	Cphx1	chr14	protein_coding	cytoplasmic polyadenylated homeobox 1
known_NIR_5260	chr14	26136143	26139268	-	26136143;26137447	26137358;26139268	ES	ENSMUST00000102956.8	known	0.37	23	40.0	23	32;48	y	0.32	12	26.0	12	21;31	y	0.22	23	82.0	23	59;105	y	0.25	14	43.0	14	31;55	y	0.20	20	78.0	20	67;89	y	0.18	9	42.0	9	34;50	y	0.18	16	72.5	16	60;85	y	0.25	15	44.0	15	28;60	y	0.22	12	43.0	12	33;53	y	0.32	31	64.5	31	55;74	y	0.26	19	53.5	19	36;71	y	0.21	19	70.5	19	52;89	y	ENSMUSG00000021870.18	Slmap	chr14	protein_coding	sarcolemma associated protein
known_NIR_5261	chr14	26149471	26159834	-	26149471	26150943	5pMXE	ENSMUST00000136625.2	known	0.00	0	61	0	61	n	0.05	2	41	2	41	y	0.03	3	91	3	91	y	0.01	1	73	1	73	n	0.00	0	77	0	77	n	0.02	1	53	1	53	n	0.08	7	78	7	78	y	0.03	1	35	1	35	n	0.05	3	55	3	55	y	0.01	1	93	1	93	n	0.00	0	53	0	53	n	0.00	0	99	0	99	n	ENSMUSG00000021870.18	Slmap	chr14	protein_coding	sarcolemma associated protein
known_NIR_5262	chr14	26149471	26159834	-	26149471;26151065	26150943;26159834	ES	ENSMUST00000102956.8	known	0.00	0	65.5	0	61;70	n	0.05	2	41.0	2	41;41	y	0.03	3	91.5	3	91;92	y	0.02	1	65.5	1	73;58	n	0.00	0	74.5	0	77;72	n	0.02	1	47.0	1	53;41	n	0.08	7	84.0	7	78;90	y	0.03	1	38.0	1	35;41	n	0.06	3	50.5	3	55;46	y	0.01	1	96.5	1	93;100	n	0.00	0	52.5	0	53;52	n	0.00	0	91.5	0	99;84	n	ENSMUSG00000021870.18	Slmap	chr14	protein_coding	sarcolemma associated protein
known_NIR_5263	chr14	26163789	26163952	-	26163789	26174693	A5SS	ENSMUST00000112331.9	known	0.00	0	4	0	4	n	-	-	-	-	-	-	0.22	5	18	5	18	y	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.09	1	10	1	10	n	0.00	0	16	0	16	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	ENSMUSG00000021870.18	Slmap	chr14	protein_coding	sarcolemma associated protein
known_NIR_5264	chr14	26163789	26163952	-	26163789	26180565	A5SS	ENSMUST00000102956.8	known	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.28	5	13	5	13	y	0.00	0	20	0	20	n	0.00	0	9	0	9	n	0.06	1	16	1	16	n	0.00	0	16	0	16	n	0.00	0	17	0	17	n	0.00	0	17	0	17	n	0.00	0	12	0	12	n	0.00	0	17	0	17	n	0.00	0	21	0	21	n	ENSMUSG00000021870.18	Slmap	chr14	protein_coding	sarcolemma associated protein
known_NIR_5265	chr14	26163789	26163952	-	26163789	26181197	A5SS	ENSMUST00000112330.8	known	0.00	0	25	0	25	n	0.00	0	18	0	18	n	0.11	5	39	5	39	y	0.00	0	38	0	38	n	0.00	0	53	0	53	n	0.05	1	18	1	18	n	0.00	0	41	0	41	n	0.00	0	25	0	25	n	0.00	0	27	0	27	n	0.00	0	48	0	48	n	0.00	0	32	0	32	n	0.00	0	52	0	52	n	ENSMUSG00000021870.18	Slmap	chr14	protein_coding	sarcolemma associated protein
known_NIR_5266	chr14	26163789	26181059	-	26163789;26180615	26180565;26181059	ES	ENSMUST00000102956.8	known	0.22	3	10.5	3	11;10	y	0.33	3	6.0	3	7;5	y	0.23	4	13.5	4	13;14	y	0.04	1	23.0	1	20;26	n	0.42	8	11.0	8	9;13	y	0.18	3	14.0	3	16;12	y	0.26	5	14.5	5	16;13	y	0.13	2	13.5	2	17;10	y	0.29	5	12.0	5	17;7	y	0.44	8	10.0	8	12;8	y	0.19	3	13.0	3	17;9	y	0.11	2	15.5	2	21;10	y	ENSMUSG00000021870.18	Slmap	chr14	protein_coding	sarcolemma associated protein
known_NIR_5267	chr14	26163789	26181197	-	26163789;26174755	26174693;26181197	ES	ENSMUST00000112331.9	known	0.85	25	4.5	25	4;5	y	0.97	18	0.5	18	0;1	n	0.78	39	11.0	39	18;4	y	0.81	38	9.0	38	14;4	y	0.89	53	6.5	53	7;6	y	0.75	18	6.0	18	10;2	y	0.80	41	10.0	41	16;4	y	0.85	25	4.5	25	5;4	y	0.90	27	3.0	27	5;1	n	0.88	48	6.5	48	8;5	y	0.89	32	4.0	32	7;1	n	0.90	52	6.0	52	10;2	y	ENSMUSG00000021870.18	Slmap	chr14	protein_coding	sarcolemma associated protein
known_NIR_5268	chr14	26163789	26181197	-	26163789;26181109	26181059;26181197	ES	ENSMUST00000145738.8	known	0.68	25	12.0	25	3;21	y	0.65	18	9.5	18	3;16	y	0.67	39	19.0	39	4;34	y	0.75	38	13.0	38	1;25	n	0.78	53	15.0	53	8;22	y	0.71	18	7.5	18	3;12	y	0.72	41	16.0	41	5;27	y	0.81	25	6.0	25	2;10	y	0.73	27	10.0	27	5;15	y	0.76	48	15.5	48	8;23	y	0.79	32	8.5	32	3;14	y	0.86	52	8.5	52	2;15	y	ENSMUSG00000021870.18	Slmap	chr14	protein_coding	sarcolemma associated protein
known_NIR_5269	chr14	26163789;26174755	26174693;26180565	-	26163789	26180565	cassetteExon	ENSMUST00000102956.8	known	0.29	4.5	11	4;5	11	y	0.00	0.0	7	0;0	7	n	0.50	13.0	13	18;8	13	y	0.37	11.5	20	14;9	20	y	0.38	5.5	9	7;4	9	y	0.29	6.5	16	10;3	16	y	0.45	13.0	16	16;10	16	y	0.15	3.0	17	5;1	17	n	0.24	5.5	17	5;6	17	y	0.40	8.0	12	8;8	12	y	0.31	7.5	17	7;8	17	y	0.26	7.5	21	10;5	21	y	ENSMUSG00000021870.18	Slmap	chr14	protein_coding	sarcolemma associated protein
known_NIR_5270	chr14	26163789;26174755	26174693;26181059	-	26163789	26181059	cassetteExon	ENSMUST00000145738.8	known	0.45	2.5	3	4;1	3	n	0.14	0.5	3	0;1	3	n	0.69	9.0	4	18;0	4	n	0.88	7.5	1	14;1	1	n	0.38	5.0	8	7;3	8	y	0.62	5.0	3	10;0	3	n	0.62	8.0	5	16;0	5	n	0.56	2.5	2	5;0	2	n	0.33	2.5	5	5;0	5	n	0.36	4.5	8	8;1	8	n	0.54	3.5	3	7;0	3	n	0.73	5.5	2	10;1	2	n	ENSMUSG00000021870.18	Slmap	chr14	protein_coding	sarcolemma associated protein
known_NIR_5271	chr14	26163789;26174755	26174693;26181059	-	26163789;26180615	26180565;26181059	MXE	ENSMUST00000102956.8	known	0.19	2.5	10.5	4;1	11;10	n	0.08	0.5	6.0	0;1	7;5	n	0.40	9.0	13.5	18;0	13;14	n	0.25	7.5	23.0	14;1	20;26	n	0.31	5.0	11.0	7;3	9;13	y	0.26	5.0	14.0	10;0	16;12	n	0.36	8.0	14.5	16;0	16;13	n	0.16	2.5	13.5	5;0	17;10	n	0.17	2.5	12.0	5;0	17;7	n	0.31	4.5	10.0	8;1	12;8	n	0.21	3.5	13.0	7;0	17;9	n	0.26	5.5	15.5	10;1	21;10	n	ENSMUSG00000021870.18	Slmap	chr14	protein_coding	sarcolemma associated protein
known_NIR_5272	chr14	26163789;26174755	26174693;26181197	-	26163789;26181109	26180565;26181197	MXE	ENSMUST00000102956.8	known	0.22	4.5	16.0	4;5	11;21	y	0.04	0.5	11.5	0;1	7;16	n	0.32	11.0	23.5	18;4	13;34	y	0.29	9.0	22.5	14;4	20;25	y	0.30	6.5	15.5	7;6	9;22	y	0.30	6.0	14.0	10;2	16;12	y	0.32	10.0	21.5	16;4	16;27	y	0.25	4.5	13.5	5;4	17;10	y	0.16	3.0	16.0	5;1	17;15	n	0.27	6.5	17.5	8;5	12;23	y	0.21	4.0	15.5	7;1	17;14	n	0.25	6.0	18.0	10;2	21;15	y	ENSMUSG00000021870.18	Slmap	chr14	protein_coding	sarcolemma associated protein
known_NIR_5273	chr14	26163789;26180615	26180565;26181197	-	26163789	26181197	cassetteExon	ENSMUST00000112330.8	known	0.24	8.0	25	11;5	25	y	0.22	5.0	18	7;3	18	y	0.21	10.5	39	13;8	39	y	0.25	12.5	38	20;5	38	y	0.11	6.5	53	9;4	53	y	0.36	10.0	18	16;4	18	y	0.20	10.5	41	16;5	41	y	0.30	10.5	25	17;4	25	y	0.28	10.5	27	17;4	27	y	0.17	10.0	48	12;8	48	y	0.26	11.5	32	17;6	32	y	0.19	12.5	52	21;4	52	y	ENSMUSG00000021870.18	Slmap	chr14	protein_coding	sarcolemma associated protein
known_NIR_5274	chr14	26163789;26180615	26180565;26181197	-	26163789;26174755	26174693;26181197	MXE	ENSMUST00000112331.9	known	0.64	8.0	4.5	11;5	4;5	y	0.91	5.0	0.5	7;3	0;1	n	0.49	10.5	11.0	13;8	18;4	y	0.58	12.5	9.0	20;5	14;4	y	0.50	6.5	6.5	9;4	7;6	y	0.62	10.0	6.0	16;4	10;2	y	0.51	10.5	10.0	16;5	16;4	y	0.70	10.5	4.5	17;4	5;4	y	0.78	10.5	3.0	17;4	5;1	n	0.61	10.0	6.5	12;8	8;5	y	0.74	11.5	4.0	17;6	7;1	n	0.68	12.5	6.0	21;4	10;2	y	ENSMUSG00000021870.18	Slmap	chr14	protein_coding	sarcolemma associated protein
known_NIR_5275	chr14	26163789;26180615	26180565;26181197	-	26163789;26181109	26174693;26181197	MXE	ENSMUST00000090359.11	known	0.39	8.0	12.5	11;5	4;21	y	0.38	5.0	8.0	7;3	0;16	n	0.29	10.5	26.0	13;8	18;34	y	0.39	12.5	19.5	20;5	14;25	y	0.31	6.5	14.5	9;4	7;22	y	0.48	10.0	11.0	16;4	10;12	y	0.33	10.5	21.5	16;5	16;27	y	0.58	10.5	7.5	17;4	5;10	y	0.51	10.5	10.0	17;4	5;15	y	0.39	10.0	15.5	12;8	8;23	y	0.52	11.5	10.5	17;6	7;14	y	0.50	12.5	12.5	21;4	10;15	y	ENSMUSG00000021870.18	Slmap	chr14	protein_coding	sarcolemma associated protein
known_NIR_5276	chr14	26163789;26180615	26180565;26181197	-	26163789;26181109	26181059;26181197	MXE	ENSMUST00000145738.8	known	0.40	8.0	12.0	11;5	3;21	y	0.34	5.0	9.5	7;3	3;16	y	0.36	10.5	19.0	13;8	4;34	y	0.49	12.5	13.0	20;5	1;25	n	0.30	6.5	15.0	9;4	8;22	y	0.57	10.0	7.5	16;4	3;12	y	0.40	10.5	16.0	16;5	5;27	y	0.64	10.5	6.0	17;4	2;10	y	0.51	10.5	10.0	17;4	5;15	y	0.39	10.0	15.5	12;8	8;23	y	0.57	11.5	8.5	17;6	3;14	y	0.60	12.5	8.5	21;4	2;15	y	ENSMUSG00000021870.18	Slmap	chr14	protein_coding	sarcolemma associated protein
known_NIR_5277	chr14	26163789;26181109	26181059;26181197	-	26163789;26174755	26174693;26181197	MXE	ENSMUST00000112331.9	known	0.73	12.0	4.5	3;21	4;5	y	0.95	9.5	0.5	3;16	0;1	n	0.63	19.0	11.0	4;34	18;4	y	0.59	13.0	9.0	1;25	14;4	n	0.70	15.0	6.5	8;22	7;6	y	0.56	7.5	6.0	3;12	10;2	y	0.62	16.0	10.0	5;27	16;4	y	0.57	6.0	4.5	2;10	5;4	y	0.77	10.0	3.0	5;15	5;1	n	0.70	15.5	6.5	8;23	8;5	y	0.68	8.5	4.0	3;14	7;1	n	0.59	8.5	6.0	2;15	10;2	y	ENSMUSG00000021870.18	Slmap	chr14	protein_coding	sarcolemma associated protein
known_NIR_5278	chr14	26163789;26181109	26181059;26181197	-	26163789;26180615	26174693;26181197	MXE	ENSMUST00000146438.2	known	0.73	12.0	4.5	3;21	4;5	y	0.86	9.5	1.5	3;16	0;3	n	0.59	19.0	13.0	4;34	18;8	y	0.58	13.0	9.5	1;25	14;5	n	0.73	15.0	5.5	8;22	7;4	y	0.52	7.5	7.0	3;12	10;4	y	0.60	16.0	10.5	5;27	16;5	y	0.57	6.0	4.5	2;10	5;4	y	0.69	10.0	4.5	5;15	5;4	y	0.66	15.5	8.0	8;23	8;8	y	0.57	8.5	6.5	3;14	7;6	y	0.55	8.5	7.0	2;15	10;4	y	ENSMUSG00000021870.18	Slmap	chr14	protein_coding	sarcolemma associated protein
known_NIR_5279	chr14	26174755;26180615	26180565;26181059	-	26174755	26181059	cassetteExon	ENSMUST00000090359.11	known	0.88	7.5	1	5;10	1	n	0.71	2.5	1	0;5	1	n	1.00	11.0	0	8;14	0	n	0.95	17.5	1	9;26	1	n	0.74	8.5	3	4;13	3	y	1.00	7.5	0	3;12	0	n	1.00	11.5	0	10;13	0	n	1.00	5.5	0	1;10	0	n	1.00	6.5	0	6;7	0	n	0.89	8.0	1	8;8	1	n	1.00	8.5	0	8;9	0	n	0.88	7.5	1	5;10	1	n	ENSMUSG00000021870.18	Slmap	chr14	protein_coding	sarcolemma associated protein
known_NIR_5280	chr14	26174755;26180615	26180565;26181197	-	26174755	26181197	cassetteExon	ENSMUST00000112331.9	known	0.50	5.0	5	5;5	5	y	0.60	1.5	1	0;3	1	n	0.67	8.0	4	8;8	4	y	0.64	7.0	4	9;5	4	y	0.40	4.0	6	4;4	6	y	0.64	3.5	2	3;4	2	n	0.65	7.5	4	10;5	4	y	0.38	2.5	4	1;4	4	n	0.83	5.0	1	6;4	1	n	0.62	8.0	5	8;8	5	y	0.88	7.0	1	8;6	1	n	0.69	4.5	2	5;4	2	y	ENSMUSG00000021870.18	Slmap	chr14	protein_coding	sarcolemma associated protein
known_NIR_5281	chr14	26174755;26180615	26180565;26181197	-	26174755;26181109	26181059;26181197	MXE	ENSMUST00000090359.11	known	0.31	5.0	11.0	5;5	1;21	n	0.15	1.5	8.5	0;3	1;16	n	0.32	8.0	17.0	8;8	0;34	n	0.35	7.0	13.0	9;5	1;25	n	0.24	4.0	12.5	4;4	3;22	y	0.37	3.5	6.0	3;4	0;12	n	0.36	7.5	13.5	10;5	0;27	n	0.33	2.5	5.0	1;4	0;10	n	0.40	5.0	7.5	6;4	0;15	n	0.40	8.0	12.0	8;8	1;23	n	0.50	7.0	7.0	8;6	0;14	n	0.36	4.5	8.0	5;4	1;15	n	ENSMUSG00000021870.18	Slmap	chr14	protein_coding	sarcolemma associated protein
known_NIR_5282	chr14	26174755;26181109	26181059;26181197	-	26174755	26181197	cassetteExon	ENSMUST00000112331.9	known	0.69	11.0	5	1;21	5	n	0.89	8.5	1	1;16	1	n	0.81	17.0	4	0;34	4	n	0.76	13.0	4	1;25	4	n	0.68	12.5	6	3;22	6	y	0.75	6.0	2	0;12	2	n	0.77	13.5	4	0;27	4	n	0.56	5.0	4	0;10	4	n	0.88	7.5	1	0;15	1	n	0.71	12.0	5	1;23	5	n	0.88	7.0	1	0;14	1	n	0.80	8.0	2	1;15	2	n	ENSMUSG00000021870.18	Slmap	chr14	protein_coding	sarcolemma associated protein
known_NIR_5283	chr14	26180615	26181197	-	26180615;26181109	26181059;26181197	ES	ENSMUST00000102956.8	known	0.24	5	15.5	5	10;21	y	0.22	3	10.5	3	5;16	y	0.25	8	24.0	8	14;34	y	0.16	5	25.5	5	26;25	y	0.19	4	17.5	4	13;22	y	0.25	4	12.0	4	12;12	y	0.20	5	20.0	5	13;27	y	0.29	4	10.0	4	10;10	y	0.27	4	11.0	4	7;15	y	0.34	8	15.5	8	8;23	y	0.34	6	11.5	6	9;14	y	0.24	4	12.5	4	10;15	y	ENSMUSG00000021870.18	Slmap	chr14	protein_coding	sarcolemma associated protein
known_NIR_5284	chr14	26359641;26368178	26367814;26374261	+	26359641	26374261	cassetteExon	ENSMUST00000171282.2	known	1.00	423.5	1	399;448	1	n	1.00	384.5	0	322;447	0	n	1.00	854.5	2	804;905	2	y	1.00	469.0	0	471;467	0	n	1.00	624.0	0	599;649	0	n	1.00	443.5	0	377;510	0	n	1.00	477.0	0	422;532	0	n	1.00	442.0	1	448;436	1	n	1.00	337.5	0	298;377	0	n	1.00	449.0	0	429;469	0	n	1.00	380.0	0	354;406	0	n	1.00	456.0	0	429;483	0	n	ENSMUSG00000021877.13	Arf4	chr14	protein_coding	ADP-ribosylation factor 4
known_NIR_5285	chr14	26682995	26685604	-	26682995;26684834	26684763;26685604	ES	ENSMUST00000036570.5	known	0.27	2	5.5	2	4;7	y	0.00	0	7.0	0	9;5	n	0.10	3	28.0	3	33;23	y	0.15	1	5.5	1	7;4	n	0.11	2	16.5	2	19;14	y	0.18	3	14.0	3	13;15	y	0.26	3	8.5	3	8;9	y	0.06	1	14.5	1	17;12	n	0.17	2	10.0	2	14;6	y	0.09	1	10.5	1	11;10	n	0.10	1	9.0	1	11;7	n	0.16	3	15.5	3	14;17	y	ENSMUSG00000040760.12	Appl1	chr14	protein_coding	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1
known_NIR_5286	chr14	26682995	26685604	-	26684834	26685604	3pMXE	ENSMUST00000142261.2	known	0.22	2	7	2	7	n	0.00	0	5	0	5	n	0.12	3	23	3	23	y	0.20	1	4	1	4	n	0.12	2	14	2	14	y	0.17	3	15	3	15	y	0.25	3	9	3	9	y	0.08	1	12	1	12	n	0.25	2	6	2	6	n	0.09	1	10	1	10	n	0.12	1	7	1	7	n	0.15	3	17	3	17	y	ENSMUSG00000040760.12	Appl1	chr14	protein_coding	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1
known_NIR_5287	chr14	27058226	27084747	+	26987542	27084747	A5SS	ENSMUST00000225949.2	known	0.45	10	12	10	12	y	0.76	13	4	13	4	y	0.95	35	2	35	2	y	0.74	23	8	23	8	y	0.59	19	13	19	13	y	1.00	14	0	14	0	n	0.71	20	8	20	8	y	0.64	16	9	16	9	y	0.73	8	3	8	3	y	0.82	27	6	27	6	y	0.64	9	5	9	5	y	0.81	21	5	21	5	y	ENSMUSG00000021895.11	Arhgef3	chr14	protein_coding	Rho guanine nucleotide exchange factor (GEF) 3
known_NIR_5288	chr14	27202048	27202873	+	27202048	27202599	A3SS	ENSMUST00000022450.6	known	0.00	0	23	0	23	n	0.00	0	22	0	22	n	0.07	4	53	4	53	y	0.10	4	35	4	35	y	0.06	3	51	3	51	y	0.07	2	26	2	26	y	0.11	4	32	4	32	y	0.14	5	30	5	30	y	0.16	4	21	4	21	y	0.11	5	40	5	40	y	0.05	2	40	2	40	y	0.17	7	34	7	34	y	ENSMUSG00000040651.10	Tasor	chr14	protein_coding	transcription activation suppressor
known_NIR_5289	chr14	27344571;27345706	27345640;27374644	+	27344571	27374644	cassetteExon	ENSMUST00000210135.2	known	0.47	9.0	10	8;10	10	y	0.26	2.5	7	1;4	7	n	0.12	3.0	23	4;2	23	y	0.46	8.5	10	6;11	10	y	0.55	12.0	10	11;13	10	y	0.38	6.0	10	5;7	10	y	0.38	7.5	12	6;9	12	y	0.57	8.0	6	9;7	6	y	0.50	10.0	10	9;11	10	y	0.20	5.5	22	6;5	22	y	0.54	7.0	6	7;7	6	y	0.50	7.0	7	8;6	7	y	ENSMUSG00000040640.12	Erc2	chr14	protein_coding	ELKS/RAB6-interacting/CAST family member 2
known_NIR_5290	chr14	27345706;27350422	27350369;27374644	+	27345706	27374644	cassetteExon	ENSMUST00000209752.2	known	0.00	0.0	10	0;0	10	n	0.33	2.0	4	2;2	4	n	0.00	0.0	2	0;0	2	n	0.00	0.0	11	0;0	11	n	0.13	2.0	13	0;4	13	n	0.26	2.5	7	2;3	7	y	0.22	2.5	9	3;2	9	y	0.00	0.0	7	0;0	7	n	0.04	0.5	11	1;0	11	n	0.00	0.0	5	0;0	5	n	0.12	1.0	7	0;2	7	n	0.08	0.5	6	1;0	6	n	ENSMUSG00000040640.12	Erc2	chr14	protein_coding	ELKS/RAB6-interacting/CAST family member 2
known_NIR_5291	chr14	27375440	27375663	+	27375440	27498783	A3SS	ENSMUST00000090302.6	known	0.88	14	2	14	2	y	1.00	21	0	21	0	n	0.87	20	3	20	3	y	0.67	16	8	16	8	y	0.78	21	6	21	6	y	1.00	19	0	19	0	n	0.81	22	5	22	5	y	0.95	18	1	18	1	n	0.90	18	2	18	2	y	0.79	27	7	27	7	y	0.90	27	3	27	3	y	1.00	27	0	27	0	n	ENSMUSG00000040640.12	Erc2	chr14	protein_coding	ELKS/RAB6-interacting/CAST family member 2
known_NIR_5292	chr14	28385597	28419548	+	28385597	28391993	3pMXE	ENSMUST00000224853.2	known	0.75	12	4	12	4	y	1.00	4	0	4	0	n	1.00	1	0	1	0	n	1.00	11	0	11	0	n	1.00	8	0	8	0	n	-	-	-	-	-	-	0.60	3	2	3	2	n	-	-	-	-	-	-	1.00	18	0	18	0	n	0.67	14	7	14	7	y	0.70	7	3	7	3	y	0.75	9	3	9	3	y	ENSMUSG00000114818.2	Gm35164	chr14	lncRNA	predicted gene, 35164
known_NIR_5293	chr14	28744173	28749388	+	28744173	28749281	A3SS	ENSMUST00000055662.4	known	0.12	1	7	1	7	n	0.60	3	2	3	2	n	0.50	2	2	2	2	n	0.33	1	2	1	2	n	0.60	6	4	6	4	y	0.25	5	15	5	15	y	0.24	5	16	5	16	y	0.52	12	11	12	11	y	0.50	1	1	1	1	n	0.50	3	3	3	3	n	0.33	1	2	1	2	n	0.75	3	1	3	1	n	ENSMUSG00000045776.4	Lrtm1	chr14	protein_coding	leucine-rich repeats and transmembrane domains 1
known_NIR_5294	chr14	29711757	29711863	+	29711757	29712661	A3SS	ENSMUST00000016115.6	known	0.00	0	77	0	77	n	0.00	0	64	0	64	n	0.04	3	80	3	80	y	0.00	0	60	0	60	n	0.00	0	71	0	71	n	0.00	0	44	0	44	n	0.00	0	99	0	99	n	0.04	2	49	2	49	y	0.00	0	55	0	55	n	0.03	3	91	3	91	y	0.00	0	78	0	78	n	0.02	2	103	2	103	y	ENSMUSG00000015971.6	Actr8	chr14	protein_coding	ARP8 actin-related protein 8
known_NIR_5295	chr14	29721300	29721434	-	29721300	29722292	A5SS	ENSMUST00000122205.9	known	0.03	1	29	1	29	n	0.00	0	24	0	24	n	0.07	3	38	3	38	y	0.00	0	22	0	22	n	0.04	1	22	1	22	n	0.20	4	16	4	16	y	0.15	4	23	4	23	y	0.00	0	27	0	27	n	0.11	2	17	2	17	y	0.03	1	34	1	34	n	0.05	1	18	1	18	n	0.03	1	31	1	31	n	ENSMUSG00000015966.18	Il17rb	chr14	protein_coding	interleukin 17 receptor B
known_NIR_5296	chr14	29725003	29725518	-	29724371	29725518	A3SS	ENSMUST00000122205.9	known	0.00	0	9	0	9	n	0.14	2	12	2	12	y	0.00	0	25	0	25	n	0.12	2	15	2	15	y	0.12	2	15	2	15	y	0.10	1	9	1	9	n	0.16	3	16	3	16	y	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.00	0	22	0	22	n	0.00	0	12	0	12	n	0.06	2	32	2	32	y	ENSMUSG00000015966.18	Il17rb	chr14	protein_coding	interleukin 17 receptor B
known_NIR_5297	chr14	29731190	29748728	+	29731190	29753042	A3SS	ENSMUST00000067620.12	known	0.00	0	58	0	58	n	0.02	1	49	1	49	n	0.00	0	96	0	96	n	0.00	0	115	0	115	n	0.00	0	113	0	113	n	0.00	0	56	0	56	n	0.02	2	100	2	100	y	0.02	2	83	2	83	y	0.00	0	69	0	69	n	0.00	0	146	0	146	n	0.00	0	72	0	72	n	0.00	0	114	0	114	n	ENSMUSG00000015970.20	Chdh	chr14	protein_coding	choline dehydrogenase
known_NIR_5298	chr14	30227641	30240876	+	30227641;30235054	30234941;30240876	ES	ENSMUST00000225196.2	known	0.00	0	3.0	0	3;3	n	0.00	0	2.5	0	2;3	n	0.27	3	8.0	3	6;10	y	0.60	6	4.0	6	3;5	y	0.00	0	5.5	0	4;7	n	0.11	1	8.5	1	6;11	n	0.14	1	6.0	1	3;9	n	0.33	3	6.0	3	7;5	y	0.15	1	5.5	1	4;7	n	0.00	0	10.5	0	8;13	n	0.00	0	2.0	0	2;2	n	0.00	0	7.5	0	13;2	n	ENSMUSG00000021962.10	Dcp1a	chr14	protein_coding	decapping mRNA 1A
known_NIR_5299	chr14	30241634	30244685	+	30241634;30243612	30243547;30244685	ES	ENSMUST00000225196.2	known	1.00	2	0.0	2	0;0	n	0.80	2	0.5	2	1;0	n	0.14	1	6.0	1	7;5	n	0.25	1	3.0	1	6;0	n	0.31	2	4.5	2	2;7	y	0.71	5	2.0	5	3;1	n	0.60	3	2.0	3	4;0	n	0.67	4	2.0	4	0;4	n	0.67	4	2.0	4	2;2	n	0.00	0	2.0	0	1;3	n	0.00	0	1.0	0	1;1	n	0.40	1	1.5	1	1;2	n	ENSMUSG00000021962.10	Dcp1a	chr14	protein_coding	decapping mRNA 1A
known_NIR_5300	chr14	30320585	30320675	-	30317982	30320675	A3SS	ENSMUST00000112210.11	known	0.00	0	25	0	25	n	0.00	0	29	0	29	n	0.02	1	43	1	43	n	0.00	0	20	0	20	n	0.00	0	36	0	36	n	0.04	1	27	1	27	n	0.00	0	60	0	60	n	0.00	0	17	0	17	n	0.06	2	31	2	31	y	0.04	1	26	1	26	n	0.00	0	28	0	28	n	0.00	0	36	0	36	n	ENSMUSG00000021948.18	Prkcd	chr14	protein_coding	protein kinase C, delta
known_NIR_5301	chr14	30398864	30399644	+	30398857	30399644	A5SS	ENSMUST00000064230.16	known	0.11	3	25	3	25	y	0.24	7	22	7	22	y	0.19	7	30	7	30	y	0.07	2	28	2	28	y	0.11	4	32	4	32	y	0.12	3	23	3	23	y	0.06	3	45	3	45	y	0.00	0	14	0	14	n	0.05	1	20	1	20	n	0.08	4	47	4	47	y	0.20	6	24	6	24	y	0.03	1	29	1	29	n	ENSMUSG00000052395.18	Rft1	chr14	protein_coding	RFT1 homolog
known_NIR_5302	chr14	30437832	30487920	+	30460587	30487920	A5SS&ES	ENSMUST00000227201.2	known	0.50	4	4	4	4	n	0.67	8	4	8	4	y	0.47	9	10	9	10	y	0.40	4	6	4	6	y	0.45	5	6	5	6	y	0.71	12	5	12	5	y	0.67	12	6	12	6	y	0.67	4	2	4	2	n	0.71	5	2	5	2	n	0.62	10	6	10	6	y	0.67	8	4	8	4	y	0.75	9	3	9	3	y	ENSMUSG00000006527.17	Sfmbt1	chr14	protein_coding	Scm-like with four mbt domains 1
known_NIR_5303	chr14	30438545	30487920	+	30437832	30487920	A5SS	ENSMUST00000054230.12	known	0.00	0	4	0	4	n	0.20	2	8	2	8	y	0.10	1	9	1	9	n	0.50	4	4	4	4	n	0.44	4	5	4	5	n	0.14	2	12	2	12	y	0.14	2	12	2	12	y	0.43	3	4	3	4	n	0.00	0	5	0	5	n	0.17	2	10	2	10	y	0.00	0	8	0	8	n	0.31	4	9	4	9	y	ENSMUSG00000006527.17	Sfmbt1	chr14	protein_coding	Scm-like with four mbt domains 1
known_NIR_5304	chr14	30438545	30487920	+	30460587	30487920	A5SS&ES	ENSMUST00000227201.2	known	0.00	0	4	0	4	n	0.33	2	4	2	4	n	0.09	1	10	1	10	n	0.40	4	6	4	6	y	0.40	4	6	4	6	y	0.29	2	5	2	5	n	0.25	2	6	2	6	n	0.60	3	2	3	2	n	0.00	0	2	0	2	n	0.25	2	6	2	6	n	0.00	0	4	0	4	n	0.57	4	3	4	3	n	ENSMUSG00000006527.17	Sfmbt1	chr14	protein_coding	Scm-like with four mbt domains 1
known_NIR_5305	chr14	30618727	30619483	+	30618727	30619480	A3SS	ENSMUST00000120269.11	known	0.58	8944	6360	8944	6360	y	0.58	11016	7892	11016	7892	y	0.59	24952	17339	24952	17339	y	0.59	9658	6748	9658	6748	y	0.59	16517	11679	16517	11679	y	0.59	12000	8369	12000	8369	y	0.59	15397	10832	15397	10832	y	0.58	12871	9233	12871	9233	y	0.59	6273	4389	6273	4389	y	0.59	11606	8159	11606	8159	y	0.59	7317	4994	7317	4994	y	0.59	10235	7025	10235	7025	y	ENSMUSG00000021922.18	Itih4	chr14	protein_coding	inter alpha-trypsin inhibitor, heavy chain 4
known_NIR_5306	chr14	30618727	30619814	+	30618727;30619530	30619480;30619814	ES	ENSMUST00000120269.11	known	0.14	1794	11160.5	1794	6360;15961	y	0.13	2066	13834.0	2066	7892;19776	y	0.12	3971	30312.5	3971	17339;43286	y	0.14	1939	11826.5	1939	6748;16905	y	0.12	2849	20686.5	2849	11679;29694	y	0.10	1666	14822.5	1666	8369;21276	y	0.14	3038	18862.0	3038	10832;26892	y	0.12	2069	15819.5	2069	9233;22406	y	0.08	700	7745.0	700	4389;11101	y	0.11	1669	14197.0	1669	8159;20235	y	0.09	864	8940.0	864	4994;12886	y	0.08	1144	12408.0	1144	7025;17791	y	ENSMUSG00000021922.18	Itih4	chr14	protein_coding	inter alpha-trypsin inhibitor, heavy chain 4
known_NIR_5307	chr14	30618727	30619814	+	30618727;30619530	30619483;30619814	ES	ENSMUST00000078490.14	known	0.13	1794	12452.5	1794	8944;15961	y	0.12	2066	15396.0	2066	11016;19776	y	0.10	3971	34119.0	3971	24952;43286	y	0.13	1939	13281.5	1939	9658;16905	y	0.11	2849	23105.5	2849	16517;29694	y	0.09	1666	16638.0	1666	12000;21276	y	0.13	3038	21144.5	3038	15397;26892	y	0.10	2069	17638.5	2069	12871;22406	y	0.07	700	8687.0	700	6273;11101	y	0.09	1669	15920.5	1669	11606;20235	y	0.08	864	10101.5	864	7317;12886	y	0.08	1144	14013.0	1144	10235;17791	y	ENSMUSG00000021922.18	Itih4	chr14	protein_coding	inter alpha-trypsin inhibitor, heavy chain 4
known_NIR_5308	chr14	30619846	30621277	+	30619846;30620053	30619937;30621277	ES	ENSMUST00000120269.11	known	0.00	19	18779.0	19	17150;20408	y	0.00	21	24048.5	21	21324;26773	y	0.00	58	46932.0	58	44805;49059	y	0.00	9	18963.5	9	17857;20070	y	0.00	23	34244.0	23	31808;36680	y	0.00	22	23768.0	22	22078;25458	y	0.00	25	31935.0	25	28951;34919	y	0.00	23	24990.0	23	23487;26493	y	0.00	5	12326.0	5	11483;13169	y	0.00	13	23078.0	13	21185;24971	y	0.00	6	14911.5	6	13510;16313	y	0.00	7	19794.0	7	18401;21187	y	ENSMUSG00000021922.18	Itih4	chr14	protein_coding	inter alpha-trypsin inhibitor, heavy chain 4
known_NIR_5309	chr14	30634767	30635118	-	30634868	30635118	A3SS&ES	ENSMUST00000006697.17	known	0.00	15	8043	15	8043	y	0.00	15	8835	15	8835	y	0.00	17	14042	17	14042	y	0.00	16	8042	16	8042	y	0.00	31	15292	31	15292	y	0.00	7	9051	7	9051	y	0.00	22	10678	22	10678	y	0.00	15	10411	15	10411	y	0.00	9	5255	9	5255	y	0.00	14	7482	14	7482	y	0.00	11	5710	11	5710	y	0.00	16	7998	16	7998	y	ENSMUSG00000006522.18	Itih3	chr14	protein_coding	inter-alpha trypsin inhibitor, heavy chain 3
known_NIR_5310	chr14	30635150	30636610	-	30635150	30636006	5pMXE	ENSMUST00000226179.2	known	0.01	111	7724	111	7724	y	0.01	104	8113	104	8113	y	0.02	327	12933	327	12933	y	0.01	85	7531	85	7531	y	0.01	199	15060	199	15060	y	0.01	122	8648	122	8648	y	0.01	113	10127	113	10127	y	0.01	114	10068	114	10068	y	0.01	43	4981	43	4981	y	0.01	72	7331	72	7331	y	0.01	38	5354	38	5354	y	0.01	88	7500	88	7500	y	ENSMUSG00000006522.18	Itih3	chr14	protein_coding	inter-alpha trypsin inhibitor, heavy chain 3
known_NIR_5311	chr14	30635150	30636610	-	30635150;30636008	30636006;30636610	ES	ENSMUST00000006697.17	known	0.03	111	3862.0	111	7724;0	n	0.02	104	4056.5	104	8113;0	n	0.05	327	6466.5	327	12933;0	n	0.01	85	7759.5	85	7531;7988	y	0.03	199	7530.0	199	15060;0	n	0.03	122	4324.0	122	8648;0	n	0.02	113	5063.5	113	10127;0	n	0.02	114	5034.0	114	10068;0	n	0.02	43	2490.5	43	4981;0	n	0.02	72	3665.5	72	7331;0	n	0.01	38	2677.0	38	5354;0	n	0.02	88	3750.0	88	7500;0	n	ENSMUSG00000006522.18	Itih3	chr14	protein_coding	inter-alpha trypsin inhibitor, heavy chain 3
known_NIR_5312	chr14	30664583	30664851	-	30664595	30664851	A3SS	ENSMUST00000006704.17	known	0.93	591	45	591	45	y	0.93	462	36	462	36	y	0.92	825	71	825	71	y	0.92	867	80	867	80	y	0.91	1255	121	1255	121	y	0.91	618	61	618	61	y	0.92	833	74	833	74	y	0.90	753	80	753	80	y	0.90	581	62	581	62	y	0.93	963	76	963	76	y	0.93	619	48	619	48	y	0.93	1056	77	1056	77	y	ENSMUSG00000006529.17	Itih1	chr14	protein_coding	inter-alpha trypsin inhibitor, heavy chain 1
known_NIR_5313	chr14	30673675;30675608	30675429;30675760	+	30673675	30675760	cassetteExon	ENSMUST00000226551.2	known	0.00	0.0	6	0;0	6	n	0.00	0.0	1	0;0	1	n	0.19	3.5	15	2;5	15	y	0.11	1.0	8	0;2	8	n	0.00	0.0	19	0;0	19	n	0.14	2.0	12	3;1	12	n	0.12	1.0	7	0;2	7	n	0.04	0.5	11	0;1	11	n	0.00	0.0	7	0;0	7	n	0.00	0.0	13	0;0	13	n	0.00	0.0	4	0;0	4	n	0.18	1.5	7	0;3	7	n	ENSMUSG00000021918.11	Nek4	chr14	protein_coding	NIMA (never in mitosis gene a)-related expressed kinase 4
known_NIR_5314	chr14	30692521;30696315	30696172;30697180	+	30692521	30697180	cassetteExon	ENSMUST00000226551.2	known	0.17	5.0	24	3;7	24	y	0.13	3.0	20	2;4	20	y	0.35	14.5	27	14;15	27	y	0.23	7.0	23	5;9	23	y	0.13	5.0	34	5;5	34	y	0.49	9.5	10	6;13	10	y	0.19	5.5	23	2;9	23	y	0.33	7.5	15	5;10	15	y	0.05	1.5	26	1;2	26	n	0.35	7.0	13	3;11	13	y	0.10	1.5	14	0;3	14	n	0.14	4.0	25	3;5	25	y	ENSMUSG00000021918.11	Nek4	chr14	protein_coding	NIMA (never in mitosis gene a)-related expressed kinase 4
known_NIR_5315	chr14	30692521;30696315	30696265;30697180	+	30692521	30697180	cassetteExon	ENSMUST00000226551.2	known	0.13	3.5	24	0;7	24	n	0.09	2.0	20	0;4	20	n	0.22	7.5	27	0;15	27	n	0.18	5.0	23	1;9	23	n	0.08	3.0	34	1;5	34	n	0.41	7.0	10	1;13	10	n	0.16	4.5	23	0;9	23	n	0.29	6.0	15	2;10	15	y	0.04	1.0	26	0;2	26	n	0.30	5.5	13	0;11	13	n	0.12	2.0	14	1;3	14	n	0.09	2.5	25	0;5	25	n	ENSMUSG00000021918.11	Nek4	chr14	protein_coding	NIMA (never in mitosis gene a)-related expressed kinase 4
known_NIR_5316	chr14	30722717	30722801	-	30722721	30722801	A3SS	ENSMUST00000226782.2	known	0.02	7	385	7	385	y	0.02	8	397	8	397	y	0.01	12	800	12	800	y	0.01	3	399	3	399	y	0.01	9	603	9	603	y	0.02	10	494	10	494	y	0.02	10	593	10	593	y	0.00	2	473	2	473	y	0.00	1	309	1	309	n	0.01	6	507	6	507	y	0.02	8	397	8	397	y	0.01	5	488	5	488	y	ENSMUSG00000021917.17	Spcs1	chr14	protein_coding	signal peptidase complex subunit 1 homolog (S. cerevisiae)
known_NIR_5317	chr14	30723954	30728416	+	30723385	30728416	A5SS	ENSMUST00000168584.9	known	1.00	7	0	7	0	n	0.73	8	3	8	3	y	0.89	17	2	17	2	y	1.00	14	0	14	0	n	0.85	17	3	17	3	y	0.77	10	3	10	3	y	0.94	15	1	15	1	n	0.90	9	1	9	1	n	0.83	10	2	10	2	y	1.00	7	0	7	0	n	1.00	8	0	8	0	n	1.00	15	0	15	0	n	ENSMUSG00000021916.17	Glt8d1	chr14	protein_coding	glycosyltransferase 8 domain containing 1
known_NIR_5318	chr14	30723954	30728416	+	30726747	30728416	A5SS&ES	ENSMUST00000226378.2	known	0.47	7	8	7	8	y	0.67	8	4	8	4	y	0.81	17	4	17	4	y	0.61	14	9	14	9	y	0.68	17	8	17	8	y	0.62	10	6	10	6	y	0.62	15	9	15	9	y	0.56	9	7	9	7	y	0.53	10	9	10	9	y	0.78	7	2	7	2	n	0.73	8	3	8	3	y	0.83	15	3	15	3	y	ENSMUSG00000021916.17	Glt8d1	chr14	protein_coding	glycosyltransferase 8 domain containing 1
known_NIR_5319	chr14	30723954;30726747	30726675;30728416	+	30723954	30728416	cassetteExon	ENSMUST00000022476.9	known	0.39	4.5	7	1;8	7	n	0.20	2.0	8	0;4	8	n	0.13	2.5	17	1;4	17	n	0.26	5.0	14	1;9	14	n	0.26	6.0	17	4;8	17	y	0.23	3.0	10	0;6	10	n	0.23	4.5	15	0;9	15	n	0.31	4.0	9	1;7	9	n	0.31	4.5	10	0;9	10	n	0.12	1.0	7	0;2	7	n	0.16	1.5	8	0;3	8	n	0.09	1.5	15	0;3	15	n	ENSMUSG00000021916.17	Glt8d1	chr14	protein_coding	glycosyltransferase 8 domain containing 1
known_NIR_5320	chr14	30735212	30735386	-	30735281	30735386	A3SS	ENSMUST00000226740.2	known	0.09	7	71	7	71	y	0.04	4	106	4	106	y	0.05	9	159	9	159	y	0.00	0	46	0	46	n	0.06	6	98	6	98	y	0.05	4	73	4	73	y	0.01	1	133	1	133	n	0.00	0	51	0	51	n	0.03	2	63	2	63	y	0.07	7	97	7	97	y	0.07	6	85	6	85	y	0.00	0	99	0	99	n	ENSMUSG00000042354.8	Gnl3	chr14	protein_coding	guanine nucleotide binding protein-like 3 (nucleolar)
known_NIR_5321	chr14	30738349	30738784	-	30738349	30738770	A5SS	ENSMUST00000226740.2	known	-	-	-	-	-	-	0.50	2	2	2	2	n	0.86	12	2	12	2	y	1.00	3	0	3	0	n	0.83	5	1	5	1	n	0.75	3	1	3	1	n	0.50	3	3	3	3	n	0.67	2	1	2	1	n	0.50	3	3	3	3	n	0.62	8	5	8	5	y	-	-	-	-	-	-	0.80	4	1	4	1	n	ENSMUSG00000042354.8	Gnl3	chr14	protein_coding	guanine nucleotide binding protein-like 3 (nucleolar)
known_NIR_5322	chr14	30738349	30738784	-	30738411	30738784	A3SS	ENSMUST00000037739.8	known	0.00	0	46	0	46	n	0.04	2	46	2	46	y	0.06	12	189	12	189	y	0.06	3	49	3	49	y	0.05	5	94	5	94	y	0.07	3	42	3	42	y	0.03	3	99	3	99	y	0.04	2	48	2	48	y	0.05	3	57	3	57	y	0.09	8	84	8	84	y	0.00	0	51	0	51	n	0.04	4	86	4	86	y	ENSMUSG00000042354.8	Gnl3	chr14	protein_coding	guanine nucleotide binding protein-like 3 (nucleolar)
known_NIR_5323	chr14	30738411	30738770	-	30738349	30738770	A3SS	ENSMUST00000226740.2	known	1.00	6	0	6	0	n	0.33	1	2	1	2	n	0.71	5	2	5	2	n	1.00	3	0	3	0	n	0.88	7	1	7	1	n	0.00	0	1	0	1	n	0.40	2	3	2	3	n	0.00	0	1	0	1	n	0.40	2	3	2	3	n	0.64	9	5	9	5	y	1.00	1	0	1	0	n	0.75	3	1	3	1	n	ENSMUSG00000042354.8	Gnl3	chr14	protein_coding	guanine nucleotide binding protein-like 3 (nucleolar)
known_NIR_5324	chr14	30738411	30738770	-	30738411	30738784	A5SS	ENSMUST00000037739.8	known	0.12	6	46	6	46	y	0.02	1	46	1	46	n	0.03	5	189	5	189	y	0.06	3	49	3	49	y	0.07	7	94	7	94	y	0.00	0	42	0	42	n	0.02	2	99	2	99	y	0.00	0	48	0	48	n	0.03	2	57	2	57	y	0.10	9	84	9	84	y	0.02	1	51	1	51	n	0.03	3	86	3	86	y	ENSMUSG00000042354.8	Gnl3	chr14	protein_coding	guanine nucleotide binding protein-like 3 (nucleolar)
known_NIR_5325	chr14	30739370	30740886	-	30739370	30739765	5pMXE	ENSMUST00000227467.2	known	0.00	0	67	0	67	n	0.00	0	46	0	46	n	0.02	3	167	3	167	y	0.00	0	60	0	60	n	0.00	0	76	0	76	n	0.00	0	44	0	44	n	0.00	0	75	0	75	n	0.05	2	41	2	41	y	0.00	0	43	0	43	n	0.00	0	72	0	72	n	0.00	0	49	0	49	n	0.00	0	81	0	81	n	ENSMUSG00000042354.8	Gnl3	chr14	protein_coding	guanine nucleotide binding protein-like 3 (nucleolar)
known_NIR_5326	chr14	30739370	30740886	-	30739370;30739823	30739765;30740886	ES	ENSMUST00000226740.2	known	0.00	0	58.5	0	67;50	n	0.00	0	44.5	0	46;43	n	0.02	3	154.5	3	167;142	y	0.00	0	61.5	0	60;63	n	0.00	0	72.5	0	76;69	n	0.00	0	48.5	0	44;53	n	0.00	0	77.5	0	75;80	n	0.05	2	42.0	2	41;43	y	0.00	0	43.5	0	43;44	n	0.00	0	66.5	0	72;61	n	0.00	0	47.5	0	49;46	n	0.00	0	74.0	0	81;67	n	ENSMUSG00000042354.8	Gnl3	chr14	protein_coding	guanine nucleotide binding protein-like 3 (nucleolar)
known_NIR_5327	chr14	30741250;30745127	30745024;30747455	+	30741250;30744816	30744677;30747455	MXE	ENSMUST00000112098.11	known	0.11	0.5	4.0	0;1	4;4	n	0.00	0.0	1.0	0;0	0;2	n	0.00	0.0	5.5	0;0	5;6	n	0.16	1.5	8.0	0;3	1;15	n	0.00	0.0	4.5	0;0	4;5	n	-	-	-	-	-	-	0.17	0.5	2.5	0;1	1;4	n	0.00	0.0	1.0	0;0	0;2	n	0.25	0.5	1.5	0;1	0;3	n	0.33	2.5	5.0	2;3	2;8	y	0.00	0.0	1.0	0;0	1;1	n	0.30	1.5	3.5	1;2	0;7	n	ENSMUSG00000042323.18	Pbrm1	chr14	protein_coding	polybromo 1
known_NIR_5328	chr14	30744816;30745136	30745024;30747455	+	30744816	30747455	cassetteExon	ENSMUST00000112098.11	known	0.00	0.0	4	0;0	4	n	0.00	0.0	2	0;0	2	n	0.20	1.5	6	3;0	6	n	0.06	1.0	15	1;1	15	n	0.33	2.5	5	2;3	5	y	-	-	-	-	-	-	0.33	2.0	4	2;2	4	n	0.60	3.0	2	5;1	2	n	0.25	1.0	3	0;2	3	n	0.06	0.5	8	0;1	8	n	0.00	0.0	1	0;0	1	n	0.18	1.5	7	1;2	7	n	ENSMUSG00000042323.18	Pbrm1	chr14	protein_coding	polybromo 1
known_NIR_5329	chr14	30766666	30768289	+	30766666;30767382	30767287;30768289	ES	ENSMUST00000112098.11	known	0.91	5	0.5	5	1;0	n	0.67	1	0.5	1	1;0	n	0.65	12	6.5	12	7;6	y	0.64	9	5.0	9	6;4	y	0.65	21	11.5	21	5;18	y	0.50	3	3.0	3	2;4	n	0.64	8	4.5	8	4;5	y	0.71	10	4.0	10	5;3	y	1.00	2	0.0	2	0;0	n	0.76	22	7.0	22	8;6	y	0.88	7	1.0	7	0;2	n	0.62	8	5.0	8	5;5	y	ENSMUSG00000042323.18	Pbrm1	chr14	protein_coding	polybromo 1
known_NIR_5330	chr14	30776212	30783426	+	30776212;30778237	30778193;30783426	ES	ENSMUST00000112098.11	known	1.00	5	0.0	5	0;0	n	1.00	3	0.0	3	0;0	n	0.85	22	4.0	22	5;3	y	0.88	14	2.0	14	2;2	y	0.78	19	5.5	19	5;6	y	0.50	4	4.0	4	5;3	y	0.92	18	1.5	18	3;0	n	0.82	9	2.0	9	3;1	n	0.80	4	1.0	4	0;2	n	0.83	12	2.5	12	2;3	y	0.88	7	1.0	7	0;2	n	0.97	17	0.5	17	0;1	n	ENSMUSG00000042323.18	Pbrm1	chr14	protein_coding	polybromo 1
known_NIR_5331	chr14	30796939	30804510	+	30796939	30804507	A3SS	ENSMUST00000112098.11	known	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.14	5	32	5	32	y	0.00	0	18	0	18	n	0.12	4	28	4	28	y	0.00	0	21	0	21	n	0.00	0	37	0	37	n	0.05	1	20	1	20	n	0.09	2	20	2	20	y	0.00	0	23	0	23	n	0.00	0	13	0	13	n	0.03	1	37	1	37	n	ENSMUSG00000042323.18	Pbrm1	chr14	protein_coding	polybromo 1
known_NIR_5332	chr14	30829267	30835806	+	30829267;30832536	30832372;30835806	ES	ENSMUST00000112098.11	known	0.84	13	2.5	13	4;1	n	0.85	14	2.5	14	2;3	y	0.79	30	8.0	30	11;5	y	0.79	15	4.0	15	4;4	y	0.91	35	3.5	35	4;3	y	0.79	15	4.0	15	6;2	y	0.80	26	6.5	26	8;5	y	0.87	24	3.5	24	6;1	n	1.00	18	0.0	18	0;0	n	0.91	32	3.0	32	5;1	n	0.75	12	4.0	12	8;0	n	0.94	25	1.5	25	3;0	n	ENSMUSG00000042323.18	Pbrm1	chr14	protein_coding	polybromo 1
known_NIR_5333	chr14	30829267	30838970	+	30829267	30835806	3pMXE	ENSMUST00000156628.8	known	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.09	3	30	3	30	y	0.21	4	15	4	15	y	0.05	2	35	2	35	y	0.12	2	15	2	15	y	0.26	9	26	9	26	y	0.14	4	24	4	24	y	0.10	2	18	2	18	y	0.06	2	32	2	32	y	0.14	2	12	2	12	y	0.17	5	25	5	25	y	ENSMUSG00000042323.18	Pbrm1	chr14	protein_coding	polybromo 1
known_NIR_5334	chr14	30829267	30838970	+	30829267;30835961	30835806;30838970	ES	ENSMUST00000112095.8	known	0.00	0	11.5	0	13;10	n	0.00	0	12.5	0	14;11	n	0.08	3	34.0	3	30;38	y	0.19	4	17.0	4	15;19	y	0.05	2	37.0	2	35;39	y	0.11	2	17.0	2	15;19	y	0.23	9	30.5	9	26;35	y	0.16	4	20.5	4	24;17	y	0.11	2	17.0	2	18;16	y	0.06	2	29.5	2	32;27	y	0.17	2	9.5	2	12;7	y	0.17	5	25.0	5	25;25	y	ENSMUSG00000042323.18	Pbrm1	chr14	protein_coding	polybromo 1
known_NIR_5335	chr14	30846790	30850590	-	30846566	30850590	A3SS	ENSMUST00000064032.10	known	0.12	9	67	9	67	y	0.16	12	63	12	63	y	0.08	7	86	7	86	y	0.14	12	72	12	72	y	0.09	9	90	9	90	y	0.08	6	72	6	72	y	0.19	24	101	24	101	y	0.07	6	79	6	79	y	0.11	8	64	8	64	y	0.12	13	96	13	96	y	0.04	3	64	3	64	y	0.05	4	83	4	83	y	ENSMUSG00000058351.12	Smim4	chr14	protein_coding	small integral membrane protein 4
known_NIR_5336	chr14	30864968	30865075	-	30864971	30865075	A3SS	ENSMUST00000036618.14	known	0.00	0	29	0	29	n	0.09	2	21	2	21	y	0.05	2	40	2	40	y	0.08	2	23	2	23	y	0.03	1	37	1	37	n	0.08	1	12	1	12	n	0.04	1	23	1	23	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	22	0	22	n	ENSMUSG00000042286.14	Stab1	chr14	protein_coding	stabilin 1
known_NIR_5337	chr14	30896849	30898287	-	30896843	30898287	A3SS	ENSMUST00000168206.8	known	0.02	2	122	2	122	y	0.05	5	96	5	96	y	0.02	3	143	3	143	y	0.05	7	129	7	129	y	0.04	6	158	6	158	y	0.07	5	70	5	70	y	0.04	5	132	5	132	y	0.03	3	89	3	89	y	0.04	4	99	4	99	y	0.02	3	150	3	150	y	0.05	6	109	6	109	y	0.03	3	114	3	114	y	ENSMUSG00000021910.16	Nisch	chr14	protein_coding	nischarin
known_NIR_5338	chr14	30898972	30911688	-	30910751	30911688	A3SS&ES	ENSMUST00000168206.8	known	0.02	2	107	2	107	y	0.00	0	69	0	69	n	0.00	0	106	0	106	n	0.00	0	101	0	101	n	0.00	0	174	0	174	n	0.00	0	79	0	79	n	0.00	0	120	0	120	n	0.00	0	72	0	72	n	0.00	0	75	0	75	n	0.00	0	136	0	136	n	0.00	0	77	0	77	n	0.00	0	134	0	134	n	ENSMUSG00000021910.16	Nisch	chr14	protein_coding	nischarin
known_NIR_5339	chr14	30902906	30906899	-	30902906	30904456	5pMXE	ENSMUST00000167223.2	known	0.88	44	6	44	6	y	0.92	24	2	24	2	y	0.42	26	36	26	36	y	0.82	51	11	51	11	y	0.72	36	14	36	14	y	0.45	20	24	20	24	y	0.80	33	8	33	8	y	0.56	22	17	22	17	y	0.86	31	5	31	5	y	0.90	45	5	45	5	y	0.76	31	10	31	10	y	0.90	38	4	38	4	y	ENSMUSG00000021910.16	Nisch	chr14	protein_coding	nischarin
known_NIR_5340	chr14	30902906;30904597	30904456;30906899	-	30902906	30906899	cassetteExon	ENSMUST00000168206.8	known	0.10	5.0	44	6;4	44	y	0.09	2.5	24	2;3	24	y	0.45	21.5	26	36;7	26	y	0.11	6.5	51	11;2	51	y	0.19	8.5	36	14;3	36	y	0.42	14.5	20	24;5	20	y	0.12	4.5	33	8;1	33	n	0.30	9.5	22	17;2	22	y	0.13	4.5	31	5;4	31	y	0.09	4.5	45	5;4	45	y	0.21	8.0	31	10;6	31	y	0.11	4.5	38	4;5	38	y	ENSMUSG00000021910.16	Nisch	chr14	protein_coding	nischarin
known_NIR_5341	chr14	30906354	30906899	-	30902906	30906899	A3SS	ENSMUST00000168206.8	known	0.60	66	44	66	44	y	0.74	68	24	68	24	y	0.79	99	26	99	26	y	0.65	96	51	96	51	y	0.74	104	36	104	36	y	0.72	52	20	52	20	y	0.76	103	33	103	33	y	0.70	52	22	52	22	y	0.62	50	31	50	31	y	0.68	95	45	95	45	y	0.69	69	31	69	31	y	0.71	93	38	93	38	y	ENSMUSG00000021910.16	Nisch	chr14	protein_coding	nischarin
known_NIR_5342	chr14	30906354	30906899	-	30904597	30906899	A3SS	ENSMUST00000170436.8	known	0.94	66	4	66	4	y	0.96	68	3	68	3	y	0.93	99	7	99	7	y	0.98	96	2	96	2	y	0.97	104	3	104	3	y	0.91	52	5	52	5	y	0.99	103	1	103	1	n	0.96	52	2	52	2	y	0.93	50	4	50	4	y	0.96	95	4	95	4	y	0.92	69	6	69	6	y	0.95	93	5	93	5	y	ENSMUSG00000021910.16	Nisch	chr14	protein_coding	nischarin
known_NIR_5343	chr14	30909098	30909607	-	30909201	30909607	A3SS	ENSMUST00000168206.8	known	0.00	0	172	0	172	n	0.04	5	118	5	118	y	0.00	0	180	0	180	n	0.00	0	183	0	183	n	0.00	0	220	0	220	n	0.00	0	107	0	107	n	0.00	0	183	0	183	n	0.00	0	137	0	137	n	0.00	0	116	0	116	n	0.00	0	203	0	203	n	0.00	0	127	0	127	n	0.00	0	174	0	174	n	ENSMUSG00000021910.16	Nisch	chr14	protein_coding	nischarin
known_NIR_5344	chr14	30909675	30910596	-	30909675	30912953	A5SS	ENSMUST00000170343.8	known	0.98	167	3	167	3	y	1.00	110	0	110	0	n	0.99	180	2	180	2	y	0.99	181	1	181	1	n	0.99	227	2	227	2	y	0.99	119	1	119	1	n	1.00	174	0	174	0	n	1.00	134	0	134	0	n	1.00	126	0	126	0	n	1.00	193	0	193	0	n	1.00	113	0	113	0	n	0.98	185	3	185	3	y	ENSMUSG00000021910.16	Nisch	chr14	protein_coding	nischarin
known_NIR_5345	chr14	30909675	30912953	-	30911783	30912953	A3SS&ES	ENSMUST00000168451.8	known	0.03	3	116	3	116	y	0.00	0	92	0	92	n	0.02	2	129	2	129	y	0.01	1	142	1	142	n	0.01	2	174	2	174	y	0.01	1	96	1	96	n	0.00	0	130	0	130	n	0.00	0	91	0	91	n	0.00	0	90	0	90	n	0.00	0	151	0	151	n	0.00	0	104	0	104	n	0.02	3	137	3	137	y	ENSMUSG00000021910.16	Nisch	chr14	protein_coding	nischarin
known_NIR_5346	chr14	30960439;30961193	30961077;30961588	-	30960439	30961588	cassetteExon	ENSMUST00000226565.2	known	0.32	9.0	19	9;9	19	y	0.19	6.5	28	2;11	28	y	0.31	4.0	9	5;3	9	y	0.32	8.5	18	6;11	18	y	0.32	9.5	20	7;12	20	y	0.29	4.0	10	3;5	10	y	0.10	4.0	38	4;4	38	y	0.41	5.5	8	5;6	8	y	0.29	5.0	12	3;7	12	y	0.32	10.0	21	6;14	21	y	0.19	6.5	28	7;6	28	y	0.44	11.0	14	14;8	14	y	ENSMUSG00000021902.8	Phf7	chr14	protein_coding	PHD finger protein 7
known_NIR_5347	chr14	30961694	30962231	-	30961694	30963683	A5SS	ENSMUST00000228437.2	known	1.00	22	0	22	0	n	1.00	27	0	27	0	n	1.00	22	0	22	0	n	1.00	22	0	22	0	n	1.00	24	0	24	0	n	0.90	18	2	18	2	y	0.95	35	2	35	2	y	1.00	21	0	21	0	n	1.00	20	0	20	0	n	1.00	39	0	39	0	n	1.00	32	0	32	0	n	0.97	37	1	37	1	n	ENSMUSG00000021902.8	Phf7	chr14	protein_coding	PHD finger protein 7
known_NIR_5348	chr14	30961694	30962816	-	30961694;30962390	30962231;30962816	ES	ENSMUST00000226565.2	known	0.00	0	19.5	0	22;17	n	0.05	1	20.0	1	27;13	n	0.00	0	22.0	0	22;22	n	0.00	0	18.0	0	22;14	n	0.05	1	19.5	1	24;15	n	0.07	1	14.0	1	18;10	n	0.16	5	27.0	5	35;19	y	0.06	1	16.5	1	21;12	n	0.12	3	21.0	3	20;22	y	0.06	2	30.0	2	39;21	y	0.11	3	25.0	3	32;18	y	0.06	2	30.5	2	37;24	y	ENSMUSG00000021902.8	Phf7	chr14	protein_coding	PHD finger protein 7
known_NIR_5349	chr14	30961694	30963683	-	30961694;30962940	30962816;30963683	ES	ENSMUST00000228930.2	known	0.00	0	6.5	0	0;13	n	0.00	0	7.5	0	1;14	n	0.00	0	12.0	0	0;24	n	0.00	0	6.5	0	0;13	n	0.00	0	9.0	0	1;17	n	0.31	2	4.5	2	1;8	n	0.12	2	14.0	2	5;23	y	0.00	0	9.0	0	1;17	n	0.00	0	8.0	0	3;13	n	0.00	0	13.0	0	2;24	n	0.00	0	11.0	0	3;19	n	0.09	1	10.0	1	2;18	n	ENSMUSG00000021902.8	Phf7	chr14	protein_coding	PHD finger protein 7
known_NIR_5350	chr14	30978748	30979583	+	30978748	30979246	A3SS	ENSMUST00000022458.11	known	0.05	3	55	3	55	y	0.14	5	30	5	30	y	0.09	6	60	6	60	y	0.10	6	53	6	53	y	0.12	8	58	8	58	y	0.15	5	28	5	28	y	0.07	5	69	5	69	y	0.21	8	30	8	30	y	0.00	0	38	0	38	n	0.03	2	73	2	73	y	0.14	8	49	8	49	y	0.08	6	67	6	67	y	ENSMUSG00000021901.11	Bap1	chr14	protein_coding	Brca1 associated protein 1
known_NIR_5351	chr14	31083202	31085436	+	31082202	31085436	A5SS	ENSMUST00000022451.14	known	0.17	6	29	6	29	y	0.04	1	27	1	27	n	0.22	11	39	11	39	y	0.10	4	38	4	38	y	0.06	4	61	4	61	y	0.16	5	27	5	27	y	0.06	2	32	2	32	y	0.17	5	25	5	25	y	0.24	6	19	6	19	y	0.14	7	43	7	43	y	0.08	2	23	2	23	y	0.00	0	27	0	27	n	ENSMUSG00000021893.15	Capn7	chr14	protein_coding	calpain 7
known_NIR_5352	chr14	31201767	31204748	-	31197373	31204748	A3SS	ENSMUST00000227777.2	known	0.96	27	1	27	1	n	0.97	32	1	32	1	n	0.89	32	4	32	4	y	1.00	27	0	27	0	n	1.00	32	0	32	0	n	1.00	17	0	17	0	n	1.00	35	0	35	0	n	0.96	27	1	27	1	n	1.00	18	0	18	0	n	0.97	35	1	35	1	n	0.96	26	1	26	1	n	1.00	23	0	23	0	n	ENSMUSG00000021891.9	Mettl6	chr14	protein_coding	methyltransferase like 6
known_NIR_5353	chr14	31201767	31209528	-	31201767;31204889	31204748;31209528	ES	ENSMUST00000055303.5	known	0.14	4	24.5	4	27;22	y	0.00	0	33.0	0	32;34	n	0.07	3	38.5	3	32;45	y	0.00	0	29.0	0	27;31	n	0.08	3	35.5	3	32;39	y	0.13	3	20.0	3	17;23	y	0.13	7	47.0	7	35;59	y	0.00	0	28.0	0	27;29	n	0.08	2	24.0	2	18;30	y	0.07	3	39.5	3	35;44	y	0.09	3	30.0	3	26;34	y	0.00	0	32.0	0	23;41	n	ENSMUSG00000021891.9	Mettl6	chr14	protein_coding	methyltransferase like 6
known_NIR_5354	chr14	31201767	31209528	-	31204889	31209528	A3SS&ES	ENSMUST00000227777.2	known	0.15	4	22	4	22	y	0.00	0	34	0	34	n	0.06	3	45	3	45	y	0.00	0	31	0	31	n	0.07	3	39	3	39	y	0.12	3	23	3	23	y	0.11	7	59	7	59	y	0.00	0	29	0	29	n	0.06	2	30	2	30	y	0.06	3	44	3	44	y	0.08	3	34	3	34	y	0.00	0	41	0	41	n	ENSMUSG00000021891.9	Mettl6	chr14	protein_coding	methyltransferase like 6
known_NIR_5355	chr14	31203410	31204748	-	31197373	31204748	A3SS	ENSMUST00000227777.2	known	0.83	5	1	5	1	n	0.83	5	1	5	1	n	0.69	9	4	9	4	y	1.00	5	0	5	0	n	1.00	6	0	6	0	n	1.00	3	0	3	0	n	1.00	9	0	9	0	n	0.50	1	1	1	1	n	1.00	12	0	12	0	n	0.90	9	1	9	1	n	0.83	5	1	5	1	n	1.00	10	0	10	0	n	ENSMUSG00000021891.9	Mettl6	chr14	protein_coding	methyltransferase like 6
known_NIR_5356	chr14	31203410	31204748	-	31201767	31204748	A3SS	ENSMUST00000055303.5	known	0.16	5	27	5	27	y	0.14	5	32	5	32	y	0.22	9	32	9	32	y	0.16	5	27	5	27	y	0.16	6	32	6	32	y	0.15	3	17	3	17	y	0.20	9	35	9	35	y	0.04	1	27	1	27	n	0.40	12	18	12	18	y	0.20	9	35	9	35	y	0.16	5	26	5	26	y	0.30	10	23	10	23	y	ENSMUSG00000021891.9	Mettl6	chr14	protein_coding	methyltransferase like 6
known_NIR_5357	chr14	31228435	31228528	+	31226477	31228528	A5SS	ENSMUST00000022446.7	known	0.00	0	34	0	34	n	0.00	0	34	0	34	n	0.00	0	85	0	85	n	0.04	2	54	2	54	y	0.00	0	64	0	64	n	0.00	0	36	0	36	n	0.00	0	61	0	61	n	0.00	0	40	0	40	n	0.00	0	41	0	41	n	0.00	0	70	0	70	n	0.00	0	44	0	44	n	0.00	0	63	0	63	n	ENSMUSG00000021890.7	Eaf1	chr14	protein_coding	ELL associated factor 1
known_NIR_5358	chr14	31329752	31329924	-	31322279	31329924	A3SS	ENSMUST00000156431.8	known	1.00	38	0	38	0	n	0.97	31	1	31	1	n	1.00	85	0	85	0	n	1.00	30	0	30	0	n	0.99	84	1	84	1	n	1.00	32	0	32	0	n	0.98	98	2	98	2	y	1.00	19	0	19	0	n	1.00	35	0	35	0	n	1.00	58	0	58	0	n	1.00	54	0	54	0	n	0.98	40	1	40	1	n	ENSMUSG00000021884.19	Hacl1	chr14	protein_coding	2-hydroxyacyl-CoA lyase 1
known_NIR_5359	chr14	31348409;31354925	31354853;31362451	-	31348409;31357741	31351990;31362451	MXE	ENSMUST00000171414.8	known	0.00	1.5	626.5	0;3	574;679	n	0.00	1.0	316.0	0;2	325;307	n	0.00	2.5	1048.0	0;5	996;1100	n	0.00	2.0	639.0	1;3	548;730	n	0.00	5.5	1274.0	1;10	1217;1331	n	0.00	1.5	465.0	0;3	459;471	n	0.00	2.0	1174.5	0;4	1144;1205	n	0.00	1.0	423.5	0;2	406;441	n	0.01	3.0	569.0	0;6	534;604	n	0.00	2.5	851.5	1;4	766;937	n	0.00	0.5	627.5	0;1	580;675	n	0.01	5.5	819.5	3;8	787;852	y	ENSMUSG00000021884.19	Hacl1	chr14	protein_coding	2-hydroxyacyl-CoA lyase 1
known_NIR_5360	chr14	31352995	31354853	-	31348409	31354853	A3SS	ENSMUST00000167175.8	known	1.00	492	0	492	0	n	1.00	297	0	297	0	n	1.00	956	0	956	0	n	1.00	583	1	583	1	n	1.00	1240	1	1240	1	n	1.00	389	0	389	0	n	1.00	1057	0	1057	0	n	1.00	378	0	378	0	n	1.00	513	0	513	0	n	1.00	749	1	749	1	n	1.00	589	0	589	0	n	1.00	807	3	807	3	y	ENSMUSG00000115022.2	Gm49387	chr14	protein_coding	predicted gene, 49387
known_NIR_5361	chr14	31354925	31356156	-	31354925	31362451	A5SS	ENSMUST00000134626.8	known	1.00	649	3	649	3	y	1.00	400	2	400	2	y	1.00	1234	5	1234	5	y	1.00	780	3	780	3	y	0.99	1662	10	1662	10	y	0.99	472	3	472	3	y	1.00	1350	4	1350	4	y	1.00	513	2	513	2	y	0.99	680	6	680	6	y	1.00	1071	4	1071	4	y	1.00	758	1	758	1	n	0.99	1050	8	1050	8	y	ENSMUSG00000021884.19	Hacl1	chr14	protein_coding	2-hydroxyacyl-CoA lyase 1
known_NIR_5362	chr14	31354925	31357701	-	31354925;31356236	31356156;31357701	ES	ENSMUST00000167175.8	known	0.00	0	634.5	0	649;620	n	0.00	0	345.0	0	400;290	n	0.01	6	1096.5	6	1234;959	y	0.00	2	702.5	2	780;625	y	0.00	1	1478.0	1	1662;1294	n	0.00	0	443.5	0	472;415	n	0.00	1	1211.5	1	1350;1073	n	0.00	0	455.5	0	513;398	n	0.00	0	633.0	0	680;586	n	0.00	1	971.0	1	1071;871	n	0.00	0	692.5	0	758;627	n	0.00	1	903.0	1	1050;756	n	ENSMUSG00000115022.2	Gm49387	chr14	protein_coding	predicted gene, 49387
known_NIR_5363	chr14	31354925	31362451	-	31354925;31357741	31357701;31362451	ES	ENSMUST00000127204.9	known	0.01	3	339.5	3	0;679	n	0.01	2	153.5	2	0;307	n	0.01	5	553.0	5	6;1100	y	0.01	3	366.0	3	2;730	y	0.01	10	666.0	10	1;1331	n	0.01	3	235.5	3	0;471	n	0.01	4	603.0	4	1;1205	n	0.01	2	220.5	2	0;441	n	0.02	6	302.0	6	0;604	n	0.01	4	469.0	4	1;937	n	0.00	1	337.5	1	0;675	n	0.02	8	426.5	8	1;852	n	ENSMUSG00000021884.19	Hacl1	chr14	protein_coding	2-hydroxyacyl-CoA lyase 1
known_NIR_5364	chr14	31354925	31362451	-	31357741	31362451	3pMXE	ENSMUST00000156189.8	known	0.00	3	679	3	679	y	0.01	2	307	2	307	y	0.00	5	1100	5	1100	y	0.00	3	730	3	730	y	0.01	10	1331	10	1331	y	0.01	3	471	3	471	y	0.00	4	1205	4	1205	y	0.00	2	441	2	441	y	0.01	6	604	6	604	y	0.00	4	937	4	937	y	0.00	1	675	1	675	n	0.01	8	852	8	852	y	ENSMUSG00000021884.19	Hacl1	chr14	protein_coding	2-hydroxyacyl-CoA lyase 1
known_NIR_5365	chr14	31362555	31363123	-	31362555	31362746	5pMXE	ENSMUST00000167175.8	known	0.00	2	554	2	554	y	0.01	4	310	4	310	y	0.01	6	1171	6	1171	y	0.01	6	717	6	717	y	0.00	3	1348	3	1348	y	0.01	4	398	4	398	y	0.01	9	1167	9	1167	y	0.01	3	427	3	427	y	0.01	4	601	4	601	y	0.01	10	904	10	904	y	0.01	4	661	4	661	y	0.01	7	839	7	839	y	ENSMUSG00000115022.2	Gm49387	chr14	protein_coding	predicted gene, 49387
known_NIR_5366	chr14	31363092;31384282	31384027;31387839	+	31363092	31387839	cassetteExon	ENSMUST00000128014.2	known	0.94	105.0	7	93;117	7	y	0.96	72.0	3	59;85	3	y	0.90	143.5	16	136;151	16	y	0.92	120.0	10	76;164	10	y	0.94	182.0	12	176;188	12	y	0.86	66.0	11	58;74	11	y	0.88	119.0	16	105;133	16	y	0.95	75.0	4	60;90	4	y	0.99	81.0	1	69;93	1	n	0.92	137.5	12	124;151	12	y	0.96	87.0	4	75;99	4	y	0.93	125.5	10	105;146	10	y	ENSMUSG00000021900.11	Btd	chr14	protein_coding	biotinidase
known_NIR_5367	chr14	31457043	31458710	-	31457043	31458717	A5SS	ENSMUST00000227863.2	known	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.05	2	38	2	38	y	0.04	1	25	1	25	n	0.00	0	41	0	41	n	0.05	1	20	1	20	n	0.00	0	31	0	31	n	0.00	0	15	0	15	n	0.12	2	14	2	14	y	0.08	2	24	2	24	y	0.00	0	8	0	8	n	0.05	2	35	2	35	y	ENSMUSG00000014496.9	Ankrd28	chr14	protein_coding	ankyrin repeat domain 28
known_NIR_5368	chr14	31805203	31807367	-	31805203	31806864	A5SS&ES	ENSMUST00000167796.2	known	0.05	6	127	6	127	y	0.07	11	138	11	138	y	0.06	12	195	12	195	y	0.06	8	129	8	129	y	0.04	7	186	7	186	y	0.03	4	118	4	118	y	0.06	14	226	14	226	y	0.07	8	100	8	100	y	0.05	7	128	7	128	y	0.10	16	141	16	141	y	0.08	12	142	12	142	y	0.08	12	145	12	145	y	ENSMUSG00000021905.15	Dph3	chr14	protein_coding	diphthamine biosynthesis 3
known_NIR_5369	chr14	31805203	31807367	-	31805203;31806938	31806864;31807367	ES	ENSMUST00000022461.11	known	0.05	6	123.5	6	127;120	y	0.08	11	128.0	11	138;118	y	0.06	12	189.5	12	195;184	y	0.06	8	127.5	8	129;126	y	0.04	7	167.5	7	186;149	y	0.04	4	105.5	4	118;93	y	0.07	14	197.5	14	226;169	y	0.08	8	90.5	8	100;81	y	0.06	7	115.5	7	128;103	y	0.10	16	143.0	16	141;145	y	0.09	12	123.0	12	142;104	y	0.09	12	128.0	12	145;111	y	ENSMUSG00000021905.15	Dph3	chr14	protein_coding	diphthamine biosynthesis 3
known_NIR_5370	chr14	31805203	31807367	-	31805203;31807064	31806864;31807367	ES	ENSMUST00000112001.9	known	0.09	6	64.5	6	127;2	y	0.14	11	70.0	11	138;2	y	0.11	12	100.0	12	195;5	y	0.11	8	65.5	8	129;2	y	0.07	7	97.5	7	186;9	y	0.06	4	60.0	4	118;2	y	0.11	14	114.0	14	226;2	y	0.13	8	51.5	8	100;3	y	0.10	7	64.5	7	128;1	n	0.18	16	74.0	16	141;7	y	0.14	12	74.0	12	142;6	y	0.14	12	74.0	12	145;3	y	ENSMUSG00000021905.15	Dph3	chr14	protein_coding	diphthamine biosynthesis 3
known_NIR_5371	chr14	31805203	31807367	-	31806938	31807367	3pMXE	ENSMUST00000112000.2	known	0.05	6	120	6	120	y	0.09	11	118	11	118	y	0.06	12	184	12	184	y	0.06	8	126	8	126	y	0.04	7	149	7	149	y	0.04	4	93	4	93	y	0.08	14	169	14	169	y	0.09	8	81	8	81	y	0.06	7	103	7	103	y	0.10	16	145	16	145	y	0.10	12	104	12	104	y	0.10	12	111	12	111	y	ENSMUSG00000021905.15	Dph3	chr14	protein_coding	diphthamine biosynthesis 3
known_NIR_5372	chr14	31806938	31807509	-	31806938	31807367	A5SS	ENSMUST00000022461.11	known	0.00	0	120	0	120	n	0.00	0	118	0	118	n	0.02	4	184	4	184	y	0.00	0	126	0	126	n	0.01	1	149	1	149	n	0.01	1	93	1	93	n	0.01	1	169	1	169	n	0.00	0	81	0	81	n	0.00	0	103	0	103	n	0.00	0	145	0	145	n	0.00	0	104	0	104	n	0.00	0	111	0	111	n	ENSMUSG00000021905.15	Dph3	chr14	protein_coding	diphthamine biosynthesis 3
known_NIR_5373	chr14	31807064	31807367	-	31806938	31807367	A3SS	ENSMUST00000022461.11	known	0.02	2	120	2	120	y	0.02	2	118	2	118	y	0.03	5	184	5	184	y	0.02	2	126	2	126	y	0.06	9	149	9	149	y	0.02	2	93	2	93	y	0.01	2	169	2	169	y	0.04	3	81	3	81	y	0.01	1	103	1	103	n	0.05	7	145	7	145	y	0.05	6	104	6	104	y	0.03	3	111	3	111	y	ENSMUSG00000021905.15	Dph3	chr14	protein_coding	diphthamine biosynthesis 3
known_NIR_5374	chr14	31807523	31813593	+	31808010	31813593	A5SS	ENSMUST00000022462.14	known	0.25	10	30	10	30	y	0.11	3	25	3	25	y	0.06	3	47	3	47	y	0.09	4	43	4	43	y	0.00	0	43	0	43	n	0.12	4	30	4	30	y	0.19	11	46	11	46	y	0.32	7	15	7	15	y	0.05	2	39	2	39	y	0.04	2	53	2	53	y	0.17	7	33	7	33	y	0.04	2	49	2	49	y	ENSMUSG00000021906.15	Oxnad1	chr14	protein_coding	oxidoreductase NAD-binding domain containing 1
known_NIR_5375	chr14	31807523;31808010	31807806;31813593	+	31807523	31813593	cassetteExon	ENSMUST00000166810.2	known	0.61	15.5	10	1;30	10	n	0.81	13.0	3	1;25	3	n	0.89	24.5	3	2;47	3	y	0.84	21.5	4	0;43	4	n	1.00	22.5	0	2;43	0	n	0.79	15.0	4	0;30	4	n	0.68	23.5	11	1;46	11	n	0.52	7.5	7	0;15	7	n	0.91	21.0	2	3;39	2	y	0.94	29.0	2	5;53	2	y	0.73	19.0	7	5;33	7	y	0.93	26.0	2	3;49	2	y	ENSMUSG00000021906.15	Oxnad1	chr14	protein_coding	oxidoreductase NAD-binding domain containing 1
known_NIR_5376	chr14	31808010	31813578	+	31808010	31813593	A3SS	ENSMUST00000171598.8	known	0.03	1	30	1	30	n	0.00	0	25	0	25	n	0.02	1	47	1	47	n	0.00	0	43	0	43	n	0.00	0	43	0	43	n	0.03	1	30	1	30	n	0.00	0	46	0	46	n	0.00	0	15	0	15	n	0.07	3	39	3	39	y	0.00	0	53	0	53	n	0.00	0	33	0	33	n	0.02	1	49	1	49	n	ENSMUSG00000021906.15	Oxnad1	chr14	protein_coding	oxidoreductase NAD-binding domain containing 1
known_NIR_5377	chr14	31813716	31818444	+	31813716;31814088	31814025;31818444	ES	ENSMUST00000165523.8	known	0.00	0	23.5	0	44;3	n	0.06	1	15.5	1	29;2	n	0.06	2	33.0	2	58;8	y	0.00	0	20.0	0	38;2	n	0.00	0	24.0	0	46;2	n	0.00	0	18.0	0	33;3	n	0.00	0	23.0	0	39;7	n	0.00	0	22.5	0	42;3	n	0.00	0	17.5	0	31;4	n	0.00	0	28.5	0	52;5	n	0.00	0	15.0	0	28;2	n	0.00	0	22.0	0	36;8	n	ENSMUSG00000021906.15	Oxnad1	chr14	protein_coding	oxidoreductase NAD-binding domain containing 1
known_NIR_5378	chr14	31814088	31818444	+	31814088;31817428	31817322;31818444	ES	ENSMUST00000171598.8	known	0.08	3	34.0	3	35;33	y	0.06	2	30.0	2	26;34	y	0.16	8	42.0	8	33;51	y	0.04	2	42.5	2	38;47	y	0.04	2	43.5	2	40;47	y	0.09	3	29.0	3	33;25	y	0.15	7	40.0	7	37;43	y	0.10	3	27.0	3	23;31	y	0.10	4	35.0	4	33;37	y	0.10	5	45.5	5	37;54	y	0.05	2	37.5	2	29;46	y	0.23	8	27.5	8	28;27	y	ENSMUSG00000021906.15	Oxnad1	chr14	protein_coding	oxidoreductase NAD-binding domain containing 1
known_NIR_5379	chr14	31814088	31818444	+	31817428	31818444	5pMXE	ENSMUST00000170519.8	known	0.08	3	33	3	33	y	0.06	2	34	2	34	y	0.14	8	51	8	51	y	0.04	2	47	2	47	y	0.04	2	47	2	47	y	0.11	3	25	3	25	y	0.14	7	43	7	43	y	0.09	3	31	3	31	y	0.10	4	37	4	37	y	0.08	5	54	5	54	y	0.04	2	46	2	46	y	0.23	8	27	8	27	y	ENSMUSG00000021906.15	Oxnad1	chr14	protein_coding	oxidoreductase NAD-binding domain containing 1
known_NIR_5380	chr14	31817428	31818444	+	31813716	31818444	A5SS	ENSMUST00000169649.2	known	1.00	33	0	33	0	n	0.97	34	1	34	1	n	0.96	51	2	51	2	y	1.00	47	0	47	0	n	1.00	47	0	47	0	n	1.00	25	0	25	0	n	1.00	43	0	43	0	n	1.00	31	0	31	0	n	1.00	37	0	37	0	n	1.00	54	0	54	0	n	1.00	46	0	46	0	n	1.00	27	0	27	0	n	ENSMUSG00000021906.15	Oxnad1	chr14	protein_coding	oxidoreductase NAD-binding domain containing 1
known_NIR_5381	chr14	31818585	31821406	+	31818585	31821346	A3SS	ENSMUST00000022462.14	known	0.00	0	48	0	48	n	0.00	0	33	0	33	n	0.06	4	66	4	66	y	0.00	0	61	0	61	n	0.07	4	57	4	57	y	0.04	2	45	2	45	y	0.02	1	41	1	41	n	0.09	4	43	4	43	y	0.00	0	37	0	37	n	0.00	0	72	0	72	n	0.00	0	47	0	47	n	0.00	0	45	0	45	n	ENSMUSG00000021906.15	Oxnad1	chr14	protein_coding	oxidoreductase NAD-binding domain containing 1
known_NIR_5382	chr14	31818585	31821491	+	31818585	31821346	A3SS	ENSMUST00000022462.14	known	0.04	2	48	2	48	y	0.06	2	33	2	33	y	0.04	3	66	3	66	y	0.00	0	61	0	61	n	0.02	1	57	1	57	n	0.06	3	45	3	45	y	0.05	2	41	2	41	y	0.00	0	43	0	43	n	0.10	4	37	4	37	y	0.04	3	72	3	72	y	0.11	6	47	6	47	y	0.02	1	45	1	45	n	ENSMUSG00000021906.15	Oxnad1	chr14	protein_coding	oxidoreductase NAD-binding domain containing 1
known_NIR_5383	chr14	31821588	31822912	+	31821588	31822943	A3SS	ENSMUST00000022462.14	known	0.00	0	69	0	69	n	0.00	0	52	0	52	n	0.00	0	88	0	88	n	0.00	0	82	0	82	n	0.00	0	82	0	82	n	0.00	0	44	0	44	n	0.00	0	70	0	70	n	0.00	0	53	0	53	n	0.00	0	59	0	59	n	0.00	0	84	0	84	n	0.02	1	62	1	62	n	0.04	2	46	2	46	y	ENSMUSG00000021906.15	Oxnad1	chr14	protein_coding	oxidoreductase NAD-binding domain containing 1
known_NIR_5384	chr14	31887653	31892705	+	31881967	31892705	A5SS	ENSMUST00000163336.8	known	0.00	0	55	0	55	n	0.00	0	29	0	29	n	0.00	0	117	0	117	n	0.00	0	89	0	89	n	0.00	0	110	0	110	n	0.00	0	49	0	49	n	0.00	0	63	0	63	n	0.00	0	71	0	71	n	0.00	0	56	0	56	n	0.00	0	77	0	77	n	0.00	0	41	0	41	n	0.03	2	76	2	76	y	ENSMUSG00000056234.16	Ncoa4	chr14	protein_coding	nuclear receptor coactivator 4
known_NIR_5385	chr14	31887779	31892705	+	31881967	31892705	A5SS	ENSMUST00000163336.8	known	0.19	13	55	13	55	y	0.22	8	29	8	29	y	0.11	14	117	14	117	y	0.05	5	89	5	89	y	0.14	18	110	18	110	y	0.31	22	49	22	49	y	0.11	8	63	8	63	y	0.26	25	71	25	71	y	0.08	5	56	5	56	y	0.10	9	77	9	77	y	0.15	7	41	7	41	y	0.08	7	76	7	76	y	ENSMUSG00000056234.16	Ncoa4	chr14	protein_coding	nuclear receptor coactivator 4
known_NIR_5386	chr14	31887779	31892705	+	31888227	31892705	5pMXE	ENSMUST00000164341.2	known	0.76	13	4	13	4	y	0.73	8	3	8	3	y	0.82	14	3	14	3	y	0.62	5	3	5	3	n	1.00	18	0	18	0	n	0.92	22	2	22	2	y	0.80	8	2	8	2	y	0.89	25	3	25	3	y	0.71	5	2	5	2	n	0.90	9	1	9	1	n	1.00	7	0	7	0	n	0.88	7	1	7	1	n	ENSMUSG00000056234.16	Ncoa4	chr14	protein_coding	nuclear receptor coactivator 4
known_NIR_5387	chr14	31888227	31892705	+	31881967	31892705	A5SS	ENSMUST00000163336.8	known	0.07	4	55	4	55	y	0.09	3	29	3	29	y	0.03	3	117	3	117	y	0.03	3	89	3	89	y	0.00	0	110	0	110	n	0.04	2	49	2	49	y	0.03	2	63	2	63	y	0.04	3	71	3	71	y	0.03	2	56	2	56	y	0.01	1	77	1	77	n	0.00	0	41	0	41	n	0.01	1	76	1	76	n	ENSMUSG00000056234.16	Ncoa4	chr14	protein_coding	nuclear receptor coactivator 4
known_NIR_5388	chr14	31892774	31894260	+	31892859	31894260	A5SS	ENSMUST00000163336.8	known	0.00	0	190	0	190	n	0.00	0	114	0	114	n	0.00	1	263	1	263	n	0.00	0	280	0	280	n	0.00	0	322	0	322	n	0.00	0	191	0	191	n	0.00	0	207	0	207	n	0.00	0	183	0	183	n	0.00	0	166	0	166	n	0.01	2	207	2	207	y	0.00	0	117	0	117	n	0.00	0	221	0	221	n	ENSMUSG00000056234.16	Ncoa4	chr14	protein_coding	nuclear receptor coactivator 4
known_NIR_5389	chr14	31895447	31896350	+	31895447	31896347	A3SS	ENSMUST00000163336.8	known	0.07	15	189	15	189	y	0.10	15	136	15	136	y	0.11	31	243	31	243	y	0.07	19	238	19	238	y	0.10	37	330	37	330	y	0.10	20	187	20	187	y	0.10	23	218	23	218	y	0.09	23	232	23	232	y	0.07	10	143	10	143	y	0.10	26	225	26	225	y	0.12	17	123	17	123	y	0.10	27	240	27	240	y	ENSMUSG00000056234.16	Ncoa4	chr14	protein_coding	nuclear receptor coactivator 4
known_NIR_5390	chr14	31911211	31913299	-	31911211	31920926	A5SS	ENSMUST00000170331.8	known	1.00	420	0	420	0	n	1.00	465	0	465	0	n	1.00	548	2	548	2	y	1.00	484	0	484	0	n	1.00	488	0	488	0	n	1.00	299	1	299	1	n	1.00	613	0	613	0	n	1.00	267	0	267	0	n	1.00	395	0	395	0	n	1.00	578	0	578	0	n	1.00	493	0	493	0	n	1.00	499	0	499	0	n	ENSMUSG00000013701.14	Timm23	chr14	protein_coding	translocase of inner mitochondrial membrane 23
known_NIR_5391	chr14	31915408	31915811	-	31915444	31915811	A3SS	ENSMUST00000013845.13	known	0.00	0	363	0	363	n	0.01	2	360	2	360	y	0.00	0	498	0	498	n	0.00	0	404	0	404	n	0.00	0	450	0	450	n	0.00	0	243	0	243	n	0.00	0	554	0	554	n	0.00	0	235	0	235	n	0.00	0	344	0	344	n	0.00	0	506	0	506	n	0.00	0	393	0	393	n	0.00	0	439	0	439	n	ENSMUSG00000013701.14	Timm23	chr14	protein_coding	translocase of inner mitochondrial membrane 23
known_NIR_5392	chr14	31915444	31920926	-	31915444;31915904	31915811;31920926	ES	ENSMUST00000013845.13	known	0.01	5	387.0	5	363;411	y	0.01	5	343.5	5	360;327	y	0.01	6	486.5	6	498;475	y	0.01	5	394.0	5	404;384	y	0.00	1	432.5	1	450;415	n	0.00	0	259.0	0	243;275	n	0.00	2	546.5	2	554;539	y	0.00	1	233.0	1	235;231	n	0.01	2	345.5	2	344;347	y	0.01	5	494.5	5	506;483	y	0.00	1	379.5	1	393;366	n	0.00	2	422.0	2	439;405	y	ENSMUSG00000013701.14	Timm23	chr14	protein_coding	translocase of inner mitochondrial membrane 23
known_NIR_5393	chr14	31915444	31920926	-	31915904	31920926	A3SS&ES	ENSMUST00000226683.2	known	0.01	5	411	5	411	y	0.02	5	327	5	327	y	0.01	6	475	6	475	y	0.01	5	384	5	384	y	0.00	1	415	1	415	n	0.00	0	275	0	275	n	0.00	2	539	2	539	y	0.00	1	231	1	231	n	0.01	2	347	2	347	y	0.01	5	483	5	483	y	0.00	1	366	1	366	n	0.00	2	405	2	405	y	ENSMUSG00000013701.14	Timm23	chr14	protein_coding	translocase of inner mitochondrial membrane 23
known_NIR_5394	chr14	31915904	31920926	-	31911211	31920926	A3SS	ENSMUST00000170331.8	known	1.00	411	0	411	0	n	1.00	327	0	327	0	n	1.00	475	2	475	2	y	1.00	384	0	384	0	n	1.00	415	0	415	0	n	1.00	275	1	275	1	n	1.00	539	0	539	0	n	1.00	231	0	231	0	n	1.00	347	0	347	0	n	1.00	483	0	483	0	n	1.00	366	0	366	0	n	1.00	405	0	405	0	n	ENSMUSG00000013701.14	Timm23	chr14	protein_coding	translocase of inner mitochondrial membrane 23
known_NIR_5395	chr14	31924142	31930114	+	31924422	31930114	A5SS	ENSMUST00000164137.8	known	0.25	3	9	3	9	y	0.14	1	6	1	6	n	0.08	1	11	1	11	n	0.50	3	3	3	3	n	0.29	6	15	6	15	y	0.11	1	8	1	8	n	0.07	1	14	1	14	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.33	7	14	7	14	y	0.20	2	8	2	8	y	0.17	3	15	3	15	y	ENSMUSG00000021911.17	Parg	chr14	protein_coding	poly (ADP-ribose) glycohydrolase
known_NIR_5396	chr14	31930180	31930649	+	31930180	31930669	A3SS	ENSMUST00000164137.8	known	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.08	1	12	1	12	n	0.00	0	14	0	14	n	0.00	0	25	0	25	n	0.18	2	9	2	9	y	0.00	0	11	0	11	n	0.22	2	7	2	7	n	0.22	2	7	2	7	n	0.00	0	26	0	26	n	0.00	0	10	0	10	n	0.06	1	16	1	16	n	ENSMUSG00000021911.17	Parg	chr14	protein_coding	poly (ADP-ribose) glycohydrolase
known_NIR_5397	chr14	31936607;31939395	31939340;31939617	+	31936607	31939617	cassetteExon	ENSMUST00000164137.8	known	0.00	0.0	22	0;0	22	n	0.00	0.0	12	0;0	12	n	0.00	0.0	41	0;0	41	n	0.00	0.0	20	0;0	20	n	0.00	0.0	25	0;0	25	n	0.00	0.0	29	0;0	29	n	0.04	1.5	32	1;2	32	n	0.07	2.0	25	2;2	25	y	0.00	0.0	21	0;0	21	n	0.00	0.0	32	0;0	32	n	0.00	0.0	16	0;0	16	n	0.00	0.0	18	0;0	18	n	ENSMUSG00000021911.17	Parg	chr14	protein_coding	poly (ADP-ribose) glycohydrolase
known_NIR_5398	chr14	32003892	32006056	+	31996915	32006056	A5SS	ENSMUST00000163350.8	known	0.05	2	39	2	39	y	0.06	2	29	2	29	y	0.05	2	42	2	42	y	0.17	5	24	5	24	y	0.00	0	39	0	39	n	0.00	0	9	0	9	n	0.00	0	16	0	16	n	0.00	0	20	0	20	n	0.09	2	21	2	21	y	0.12	5	36	5	36	y	0.00	0	22	0	22	n	0.03	1	29	1	29	n	ENSMUSG00000021911.17	Parg	chr14	protein_coding	poly (ADP-ribose) glycohydrolase
known_NIR_5399	chr14	32257625	32263183	+	32248835	32263183	A5SS	ENSMUST00000066807.8	known	0.25	3	9	3	9	y	0.00	0	4	0	4	n	0.00	0	15	0	15	n	0.00	0	4	0	4	n	0.14	2	12	2	12	y	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.07	1	13	1	13	n	0.50	2	2	2	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	ENSMUSG00000054051.8	Ercc6	chr14	protein_coding	excision repair cross-complementing rodent repair deficiency, complementation group 6
known_NIR_5400	chr14	33104276	33105831	-	33104281	33105831	A3SS	ENSMUST00000111945.9	known	0.25	6	18	6	18	y	0.15	4	22	4	22	y	0.17	13	62	13	62	y	0.20	9	37	9	37	y	0.29	20	48	20	48	y	0.47	14	16	14	16	y	0.29	16	40	16	40	y	0.08	2	22	2	22	y	0.28	8	21	8	21	y	0.12	5	37	5	37	y	0.40	21	32	21	32	y	0.25	15	46	15	46	y	ENSMUSG00000021936.15	Mapk8	chr14	protein_coding	mitogen-activated protein kinase 8
known_NIR_5401	chr14	33110939	33112630	-	33110939	33112199	5pMXE	ENSMUST00000150659.8	known	0.00	0	25	0	25	n	0.00	0	23	0	23	n	0.04	2	45	2	45	y	0.00	0	31	0	31	n	0.02	1	49	1	49	n	0.00	0	21	0	21	n	0.02	1	45	1	45	n	0.00	0	24	0	24	n	0.00	0	25	0	25	n	0.06	2	32	2	32	y	0.00	0	27	0	27	n	0.00	0	27	0	27	n	ENSMUSG00000021936.15	Mapk8	chr14	protein_coding	mitogen-activated protein kinase 8
known_NIR_5402	chr14	33110939;33112270	33112199;33114899	-	33110939;33112701	33112630;33114899	MXE	ENSMUST00000111945.9	known	1.00	24.0	0.0	25;23	0;0	n	1.00	19.0	0.0	23;15	0;0	n	0.96	51.0	2.0	45;57	2;2	y	1.00	29.5	0.0	31;28	0;0	n	0.99	46.0	0.5	49;43	1;0	n	1.00	21.5	0.0	21;22	0;0	n	0.97	38.5	1.0	45;32	1;1	n	1.00	21.0	0.0	24;18	0;0	n	1.00	22.0	0.0	25;19	0;0	n	0.95	30.0	1.5	32;28	2;1	n	1.00	22.5	0.0	27;18	0;0	n	1.00	27.0	0.0	27;27	0;0	n	ENSMUSG00000021936.15	Mapk8	chr14	protein_coding	mitogen-activated protein kinase 8
known_NIR_5403	chr14	33971328	33981582	-	33971328	34030997	A5SS	ENSMUST00000228704.2	known	1.00	34	0	34	0	n	0.93	25	2	25	2	y	1.00	31	0	31	0	n	1.00	35	0	35	0	n	1.00	66	0	66	0	n	1.00	52	0	52	0	n	1.00	77	0	77	0	n	1.00	42	0	42	0	n	1.00	18	0	18	0	n	1.00	29	0	29	0	n	1.00	20	0	20	0	n	0.97	28	1	28	1	n	ENSMUSG00000041471.10	Shld2	chr14	protein_coding	shieldin complex subunit 2
known_NIR_5404	chr14	33990909	33995444	-	33990909;33991493	33991428;33995444	ES	ENSMUST00000228337.2	known	0.82	9	2.0	9	2;2	y	0.33	3	6.0	3	7;5	y	0.78	9	2.5	9	5;0	n	0.82	7	1.5	7	3;0	n	0.62	12	7.5	12	10;5	y	0.65	16	8.5	16	14;3	y	0.76	11	3.5	11	3;4	y	0.62	8	5.0	8	5;5	y	1.00	4	0.0	4	0;0	n	0.77	5	1.5	5	3;0	n	0.80	4	1.0	4	2;0	n	1.00	2	0.0	2	0;0	n	ENSMUSG00000041471.10	Shld2	chr14	protein_coding	shieldin complex subunit 2
known_NIR_5405	chr14	33990909	34030997	-	33990909;33991493	33991428;34030997	ES	ENSMUST00000111917.3	known	0.75	3	1.0	3	2;0	n	0.20	1	4.0	1	7;1	n	0.75	9	3.0	9	5;1	n	0.71	6	2.5	6	3;2	y	0.40	4	6.0	4	10;2	y	0.38	5	8.0	5	14;2	y	0.67	6	3.0	6	3;3	y	0.62	4	2.5	4	5;0	n	1.00	7	0.0	7	0;0	n	0.84	13	2.5	13	3;2	y	0.67	2	1.0	2	2;0	n	1.00	8	0.0	8	0;0	n	ENSMUSG00000041471.10	Shld2	chr14	protein_coding	shieldin complex subunit 2
known_NIR_5406	chr14	33990909	34030997	-	33995533	34030997	3pMXE	ENSMUST00000228132.2	known	1.00	3	0	3	0	n	1.00	1	0	1	0	n	0.75	9	3	9	3	y	1.00	6	0	6	0	n	0.80	4	1	4	1	n	1.00	5	0	5	0	n	0.46	6	7	6	7	y	0.80	4	1	4	1	n	1.00	7	0	7	0	n	1.00	13	0	13	0	n	1.00	2	0	2	0	n	0.80	8	2	8	2	y	ENSMUSG00000041471.10	Shld2	chr14	protein_coding	shieldin complex subunit 2
known_NIR_5407	chr14	33990909;33995533	33995444;34030997	-	33990909	34030997	cassetteExon	ENSMUST00000227375.2	known	0.60	4.5	3	9;0	3	n	0.60	1.5	1	3;0	1	n	0.40	6.0	9	9;3	9	y	0.37	3.5	6	7;0	6	n	0.62	6.5	4	12;1	4	n	0.62	8.0	5	16;0	5	n	0.60	9.0	6	11;7	6	y	0.53	4.5	4	8;1	4	n	0.22	2.0	7	4;0	7	n	0.16	2.5	13	5;0	13	n	0.50	2.0	2	4;0	2	n	0.20	2.0	8	2;2	8	y	ENSMUSG00000041471.10	Shld2	chr14	protein_coding	shieldin complex subunit 2
known_NIR_5408	chr14	33990909;33995533	33995444;34030997	-	33990909;33991493	33991428;34030997	MXE	ENSMUST00000111917.3	known	0.82	4.5	1.0	9;0	2;0	n	0.27	1.5	4.0	3;0	7;1	n	0.67	6.0	3.0	9;3	5;1	n	0.58	3.5	2.5	7;0	3;2	n	0.52	6.5	6.0	12;1	10;2	n	0.50	8.0	8.0	16;0	14;2	n	0.75	9.0	3.0	11;7	3;3	y	0.64	4.5	2.5	8;1	5;0	n	1.00	2.0	0.0	4;0	0;0	n	0.50	2.5	2.5	5;0	3;2	n	0.67	2.0	1.0	4;0	2;0	n	1.00	2.0	0.0	2;2	0;0	n	ENSMUSG00000041471.10	Shld2	chr14	protein_coding	shieldin complex subunit 2
known_NIR_5409	chr14	33991493	34030997	-	33995533	34030997	3pMXE	ENSMUST00000228132.2	known	-	-	-	-	-	-	1.00	1	0	1	0	n	0.25	1	3	1	3	n	1.00	2	0	2	0	n	0.67	2	1	2	1	n	1.00	2	0	2	0	n	0.30	3	7	3	7	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000041471.10	Shld2	chr14	protein_coding	shieldin complex subunit 2
known_NIR_5410	chr14	33991493;33995533	33995444;34030997	-	33991493	34030997	cassetteExon	ENSMUST00000111917.3	known	1.00	1.0	0	2;0	0	n	0.71	2.5	1	5;0	1	n	0.60	1.5	1	0;3	1	n	0.00	0.0	2	0;0	2	n	0.60	3.0	2	5;1	2	n	0.43	1.5	2	3;0	2	n	0.65	5.5	3	4;7	3	y	1.00	3.0	0	5;1	0	n	-	-	-	-	-	-	0.00	0.0	2	0;0	2	n	-	-	-	-	-	-	1.00	1.0	0	0;2	0	n	ENSMUSG00000041471.10	Shld2	chr14	protein_coding	shieldin complex subunit 2
known_NIR_5411	chr14	33995533	34030997	-	33995533	33996140	5pMXE	ENSMUST00000227006.2	known	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.30	3	7	3	7	y	0.00	0	6	0	6	n	0.05	1	20	1	20	n	0.00	0	14	0	14	n	0.28	7	18	7	18	y	0.11	1	8	1	8	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.67	2	1	2	1	n	ENSMUSG00000041471.10	Shld2	chr14	protein_coding	shieldin complex subunit 2
known_NIR_5412	chr14	34058533	34064076	+	34058533	34060717	3pMXE	ENSMUST00000159784.8	known	0.01	34	2374	34	2374	y	0.01	27	1797	27	1797	y	0.01	18	1184	18	1184	y	0.01	23	2236	23	2236	y	0.01	41	3374	41	3374	y	0.01	12	880	12	880	y	0.01	39	3038	39	3038	y	0.01	11	1074	11	1074	y	0.01	15	1951	15	1951	y	0.02	48	3058	48	3058	y	0.01	26	2311	26	2311	y	0.01	39	2637	39	2637	y	ENSMUSG00000021794.17	Glud1	chr14	protein_coding	glutamate dehydrogenase 1
known_NIR_5413	chr14	34061975	34063763	+	34061975	34064076	A3SS	ENSMUST00000022322.17	known	0.00	4	2973	4	2973	y	0.00	5	2453	5	2453	y	0.00	0	1580	0	1580	n	0.00	3	2782	3	2782	y	0.00	4	4327	4	4327	y	0.00	0	1126	0	1126	n	0.00	0	3961	0	3961	n	0.00	0	1330	0	1330	n	0.00	4	2495	4	2495	y	0.00	4	3949	4	3949	y	0.00	6	3064	6	3064	y	0.00	0	3313	0	3313	n	ENSMUSG00000021794.17	Glud1	chr14	protein_coding	glutamate dehydrogenase 1
known_NIR_5414	chr14	34061975	34064076	+	34058533	34064076	A5SS	ENSMUST00000163955.2	known	0.99	2973	34	2973	34	y	0.99	2453	27	2453	27	y	0.99	1580	18	1580	18	y	0.99	2782	23	2782	23	y	0.99	4327	41	4327	41	y	0.99	1126	12	1126	12	y	0.99	3961	39	3961	39	y	0.99	1330	11	1330	11	y	0.99	2495	15	2495	15	y	0.99	3949	48	3949	48	y	0.99	3064	26	3064	26	y	0.99	3313	39	3313	39	y	ENSMUSG00000021794.17	Glud1	chr14	protein_coding	glutamate dehydrogenase 1
known_NIR_5415	chr14	34274279	34288814	-	34274279;34277485	34277300;34288814	ES	ENSMUST00000022327.13	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.53	8	7.0	8	9;5	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021798.15	Ldb3	chr14	protein_coding	LIM domain binding 3
known_NIR_5416	chr14	34283838	34288814	-	34274279	34288814	A3SS	ENSMUST00000022328.14	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.86	49	8	49	8	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021798.15	Ldb3	chr14	protein_coding	LIM domain binding 3
known_NIR_5417	chr14	34283838	34288814	-	34277485	34288814	A3SS	ENSMUST00000022327.13	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.91	49	5	49	5	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021798.15	Ldb3	chr14	protein_coding	LIM domain binding 3
known_NIR_5418	chr14	34289524	34293675	-	34289524;34291684	34291670;34293675	ES	ENSMUST00000090040.12	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.10	3	27.5	3	29;26	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021798.15	Ldb3	chr14	protein_coding	LIM domain binding 3
known_NIR_5419	chr14	34414691	34416962	+	34414691	34416944	A3SS	ENSMUST00000048263.14	known	0.09	4	43	4	43	y	0.23	9	30	9	30	y	0.15	19	104	19	104	y	0.21	16	61	16	61	y	0.25	30	92	30	92	y	0.24	12	37	12	37	y	0.24	18	56	18	56	y	0.16	9	48	9	48	y	0.15	9	50	9	50	y	0.22	19	68	19	68	y	0.16	8	41	8	41	y	0.27	21	57	21	57	y	ENSMUSG00000041408.19	Wapl	chr14	protein_coding	WAPL cohesin release factor
known_NIR_5420	chr14	34459343	34461188	+	34459343	34459813	A3SS&ES	ENSMUST00000174559.3	known	0.01	1	112	1	112	n	0.00	0	84	0	84	n	0.02	4	204	4	204	y	0.01	1	115	1	115	n	0.00	0	187	0	187	n	0.00	0	89	0	89	n	0.00	0	175	0	175	n	0.00	0	100	0	100	n	0.00	0	89	0	89	n	0.00	0	158	0	158	n	0.00	0	131	0	131	n	0.00	0	155	0	155	n	ENSMUSG00000041408.19	Wapl	chr14	protein_coding	WAPL cohesin release factor
known_NIR_5421	chr14	34459343	34461188	+	34459343;34459977	34459813;34461188	ES	ENSMUST00000048263.14	known	0.01	1	100.5	1	112;89	n	0.00	0	70.5	0	84;57	n	0.02	4	172.0	4	204;140	y	0.01	1	109.0	1	115;103	n	0.00	0	152.0	0	187;117	n	0.00	0	78.5	0	89;68	n	0.00	0	149.5	0	175;124	n	0.00	0	79.5	0	100;59	n	0.00	0	89.5	0	89;90	n	0.00	0	134.0	0	158;110	n	0.00	0	117.5	0	131;104	n	0.00	0	146.5	0	155;138	n	ENSMUSG00000041408.19	Wapl	chr14	protein_coding	WAPL cohesin release factor
known_NIR_5422	chr14	34459977	34461269	+	34459977	34461188	A3SS	ENSMUST00000048263.14	known	0.00	0	89	0	89	n	0.00	0	57	0	57	n	0.00	0	140	0	140	n	0.00	0	103	0	103	n	0.05	6	117	6	117	y	0.00	0	68	0	68	n	0.05	7	124	7	124	y	0.00	0	59	0	59	n	0.02	2	90	2	90	y	0.00	0	110	0	110	n	0.00	0	104	0	104	n	0.00	0	138	0	138	n	ENSMUSG00000041408.19	Wapl	chr14	protein_coding	WAPL cohesin release factor
known_NIR_5423	chr14	3576111	3581247	+	3575541	3581247	A5SS	ENSMUST00000124353.2	known	0.92	11	1	11	1	n	0.87	20	3	20	3	y	0.97	38	1	38	1	n	0.96	27	1	27	1	n	1.00	43	0	43	0	n	1.00	30	0	30	0	n	1.00	46	0	46	0	n	0.90	28	3	28	3	y	1.00	10	0	10	0	n	0.83	35	7	35	7	y	0.90	26	3	26	3	y	0.90	18	2	18	2	y	ENSMUSG00000058317.13	Ube2e2	chr14	protein_coding	ubiquitin-conjugating enzyme E2E 2
known_NIR_5424	chr14	3576468	3581247	+	3576111	3581247	A5SS	ENSMUST00000150727.8	known	0.35	6	11	6	11	y	0.20	5	20	5	20	y	0.12	5	38	5	38	y	0.13	4	27	4	27	y	0.09	4	43	4	43	y	0.12	4	30	4	30	y	0.06	3	46	3	46	y	0.10	3	28	3	28	y	0.29	4	10	4	10	y	0.05	2	35	2	35	y	0.04	1	26	1	26	n	0.00	0	18	0	18	n	ENSMUSG00000058317.13	Ube2e2	chr14	protein_coding	ubiquitin-conjugating enzyme E2E 2
known_NIR_5425	chr14	3581430	3839265	+	3581430;3598202	3598152;3839265	ES	ENSMUST00000124353.2	known	0.12	5	36.5	5	42;31	y	0.13	4	26.0	4	31;21	y	0.08	7	82.0	7	96;68	y	0.23	9	30.5	9	38;23	y	0.19	14	59.0	14	64;54	y	0.07	3	41.0	3	56;26	y	0.11	9	70.5	9	90;51	y	0.14	6	37.0	6	47;27	y	0.14	5	31.5	5	41;22	y	0.13	10	66.5	10	74;59	y	0.10	4	34.5	4	36;33	y	0.12	5	35.0	5	41;29	y	ENSMUSG00000058317.13	Ube2e2	chr14	protein_coding	ubiquitin-conjugating enzyme E2E 2
known_NIR_5426	chr14	3581430;3839397	3839265;3882698	+	3581430;3598202	3598152;3882698	MXE	ENSMUST00000176555.8	known	0.59	31.5	21.5	5;58	42;1	n	0.64	27.5	15.5	4;51	31;0	n	0.48	46.0	49.0	7;85	96;2	y	0.64	34.0	19.0	9;59	38;0	n	0.65	60.0	32.5	14;106	64;1	n	0.42	20.5	28.0	3;38	56;0	n	0.52	51.0	46.5	9;93	90;3	y	0.54	28.0	24.0	6;50	47;1	n	0.51	21.5	21.0	5;38	41;1	n	0.57	50.5	38.0	10;91	74;2	y	0.59	27.0	18.5	4;50	36;1	n	0.49	21.0	21.5	5;37	41;2	y	ENSMUSG00000058317.13	Ube2e2	chr14	protein_coding	ubiquitin-conjugating enzyme E2E 2
known_NIR_5427	chr14	3598202	3882698	+	3598202	3839265	3pMXE	ENSMUST00000124353.2	known	0.03	1	31	1	31	n	0.00	0	21	0	21	n	0.03	2	68	2	68	y	0.00	0	23	0	23	n	0.02	1	54	1	54	n	0.00	0	26	0	26	n	0.06	3	51	3	51	y	0.04	1	27	1	27	n	0.04	1	22	1	22	n	0.03	2	59	2	59	y	0.03	1	33	1	33	n	0.06	2	29	2	29	y	ENSMUSG00000058317.13	Ube2e2	chr14	protein_coding	ubiquitin-conjugating enzyme E2E 2
known_NIR_5428	chr14	3598202	3882698	+	3598202;3839397	3839265;3882698	ES	ENSMUST00000150727.8	known	0.02	1	44.5	1	31;58	n	0.00	0	36.0	0	21;51	n	0.03	2	76.5	2	68;85	y	0.00	0	41.0	0	23;59	n	0.01	1	80.0	1	54;106	n	0.00	0	32.0	0	26;38	n	0.04	3	72.0	3	51;93	y	0.03	1	38.5	1	27;50	n	0.03	1	30.0	1	22;38	n	0.03	2	75.0	2	59;91	y	0.02	1	41.5	1	33;50	n	0.06	2	33.0	2	29;37	y	ENSMUSG00000058317.13	Ube2e2	chr14	protein_coding	ubiquitin-conjugating enzyme E2E 2
known_NIR_5429	chr14	3598202;3742332	3742291;3839265	+	3598202	3839265	cassetteExon	ENSMUST00000124353.2	known	0.10	3.5	31	4;3	31	y	0.05	1.0	21	0;2	21	n	0.00	0.0	68	0;0	68	n	0.00	0.0	23	0;0	23	n	0.01	0.5	54	0;1	54	n	0.00	0.0	26	0;0	26	n	0.01	0.5	51	0;1	51	n	0.00	0.0	27	0;0	27	n	0.08	2.0	22	2;2	22	y	0.02	1.5	59	1;2	59	n	0.00	0.0	33	0;0	33	n	0.00	0.0	29	0;0	29	n	ENSMUSG00000058317.13	Ube2e2	chr14	protein_coding	ubiquitin-conjugating enzyme E2E 2
known_NIR_5430	chr14	36601719	36618212	-	36601719	36640391	A5SS	ENSMUST00000182576.2	known	0.82	9	2	9	2	y	1.00	12	0	12	0	n	1.00	18	0	18	0	n	1.00	23	0	23	0	n	1.00	18	0	18	0	n	1.00	8	0	8	0	n	1.00	18	0	18	0	n	1.00	11	0	11	0	n	1.00	10	0	10	0	n	1.00	9	0	9	0	n	1.00	19	0	19	0	n	1.00	18	0	18	0	n	ENSMUSG00000058690.15	Ccser2	chr14	protein_coding	coiled-coil serine rich 2
known_NIR_5431	chr14	36601719;36612383	36612299;36618212	-	36601719	36618212	cassetteExon	ENSMUST00000067700.13	known	0.28	3.5	9	5;2	9	y	0.20	3.0	12	4;2	12	y	0.38	11.0	18	9;13	18	y	0.21	6.0	23	4;8	23	y	0.48	16.5	18	19;14	18	y	0.24	2.5	8	1;4	8	n	0.43	13.5	18	15;12	18	y	0.46	9.5	11	7;12	11	y	0.35	5.5	10	8;3	10	y	0.31	4.0	9	5;3	9	y	0.21	5.0	19	6;4	19	y	0.27	6.5	18	6;7	18	y	ENSMUSG00000058690.15	Ccser2	chr14	protein_coding	coiled-coil serine rich 2
known_NIR_5432	chr14	36631169	36640391	-	36601719	36640391	A3SS	ENSMUST00000182576.2	known	0.86	12	2	12	2	y	1.00	9	0	9	0	n	1.00	31	0	31	0	n	1.00	24	0	24	0	n	1.00	25	0	25	0	n	1.00	15	0	15	0	n	1.00	12	0	12	0	n	1.00	9	0	9	0	n	1.00	11	0	11	0	n	1.00	19	0	19	0	n	1.00	28	0	28	0	n	1.00	34	0	34	0	n	ENSMUSG00000058690.15	Ccser2	chr14	protein_coding	coiled-coil serine rich 2
known_NIR_5433	chr14	36640553	36641182	-	36640553	36648796	A5SS	ENSMUST00000067700.13	known	0.05	1	20	1	20	n	0.00	0	21	0	21	n	0.03	1	35	1	35	n	0.17	4	19	4	19	y	0.06	2	30	2	30	y	0.12	3	23	3	23	y	0.37	15	26	15	26	y	0.04	1	23	1	23	n	0.00	0	12	0	12	n	0.00	0	25	0	25	n	0.05	1	21	1	21	n	0.23	6	20	6	20	y	ENSMUSG00000058690.15	Ccser2	chr14	protein_coding	coiled-coil serine rich 2
known_NIR_5434	chr14	36855760	36856744	-	36855760	36856922	A5SS	ENSMUST00000042564.17	known	0.29	6	15	6	15	y	0.08	1	12	1	12	n	0.12	3	23	3	23	y	0.17	4	20	4	20	y	0.16	4	21	4	21	y	0.20	2	8	2	8	y	0.31	10	22	10	22	y	0.00	0	10	0	10	n	0.19	4	17	4	17	y	0.21	9	33	9	33	y	0.28	5	13	5	13	y	0.08	2	22	2	22	y	ENSMUSG00000041028.17	Ghitm	chr14	protein_coding	growth hormone inducible transmembrane protein
known_NIR_5435	chr14	36855760	36856744	-	36855760	36857152	A5SS	ENSMUST00000165649.4	known	0.02	6	306	6	306	y	0.00	1	240	1	240	n	0.01	3	477	3	477	y	0.01	4	448	4	448	y	0.01	4	537	4	537	y	0.01	2	285	2	285	y	0.02	10	500	10	500	y	0.00	0	282	0	282	n	0.01	4	338	4	338	y	0.01	9	644	9	644	y	0.01	5	379	5	379	y	0.00	2	557	2	557	y	ENSMUSG00000041028.17	Ghitm	chr14	protein_coding	growth hormone inducible transmembrane protein
known_NIR_5436	chr14	36855760	36856922	-	36855760	36857152	A5SS	ENSMUST00000165649.4	known	0.05	15	306	15	306	y	0.05	12	240	12	240	y	0.05	23	477	23	477	y	0.04	20	448	20	448	y	0.04	21	537	21	537	y	0.03	8	285	8	285	y	0.04	22	500	22	500	y	0.03	10	282	10	282	y	0.05	17	338	17	338	y	0.05	33	644	33	644	y	0.03	13	379	13	379	y	0.04	22	557	22	557	y	ENSMUSG00000041028.17	Ghitm	chr14	protein_coding	growth hormone inducible transmembrane protein
known_NIR_5437	chr14	3742332	3839265	+	3581430	3839265	A5SS	ENSMUST00000176843.8	known	0.38	3	5	3	5	n	0.33	2	4	2	4	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.07	1	14	1	14	n	0.00	0	3	0	3	n	0.10	1	9	1	9	n	0.00	0	6	0	6	n	0.29	2	5	2	5	n	0.17	2	10	2	10	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	ENSMUSG00000058317.13	Ube2e2	chr14	protein_coding	ubiquitin-conjugating enzyme E2E 2
known_NIR_5438	chr14	3839397	3882698	+	3839397	3872293	3pMXE	ENSMUST00000176931.8	known	1.00	58	0	58	0	n	0.96	51	2	51	2	y	1.00	85	0	85	0	n	0.98	59	1	59	1	n	1.00	106	0	106	0	n	0.93	38	3	38	3	y	0.98	93	2	93	2	y	0.98	50	1	50	1	n	1.00	38	0	38	0	n	0.99	91	1	91	1	n	1.00	50	0	50	0	n	1.00	37	0	37	0	n	ENSMUSG00000058317.13	Ube2e2	chr14	protein_coding	ubiquitin-conjugating enzyme E2E 2
known_NIR_5439	chr14	3839397	3882698	+	3872605	3882698	5pMXE	ENSMUST00000176672.2	known	0.98	58	1	58	1	n	1.00	51	0	51	0	n	0.99	85	1	85	1	n	0.98	59	1	59	1	n	0.99	106	1	106	1	n	1.00	38	0	38	0	n	0.94	93	6	93	6	y	0.96	50	2	50	2	y	1.00	38	0	38	0	n	0.99	91	1	91	1	n	1.00	50	0	50	0	n	0.86	37	6	37	6	y	ENSMUSG00000058317.13	Ube2e2	chr14	protein_coding	ubiquitin-conjugating enzyme E2E 2
known_NIR_5440	chr14	3839397;3872605	3872293;3882698	+	3839397	3882698	cassetteExon	ENSMUST00000150727.8	known	0.01	0.5	58	0;1	58	n	0.02	1.0	51	2;0	51	n	0.01	0.5	85	0;1	85	n	0.02	1.0	59	1;1	59	n	0.00	0.5	106	0;1	106	n	0.04	1.5	38	3;0	38	n	0.04	4.0	93	2;6	93	y	0.03	1.5	50	1;2	50	n	0.00	0.0	38	0;0	38	n	0.01	1.0	91	1;1	91	n	0.00	0.0	50	0;0	50	n	0.07	3.0	37	0;6	37	n	ENSMUSG00000058317.13	Ube2e2	chr14	protein_coding	ubiquitin-conjugating enzyme E2E 2
known_NIR_5441	chr14	40726160	40727598	-	40726160	40735583	A5SS	ENSMUST00000143143.8	known	0.00	0	8	0	8	n	0.10	1	9	1	9	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.10	1	9	1	9	n	0.20	1	4	1	4	n	0.14	2	12	2	12	y	0.12	1	7	1	7	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.12	2	14	2	14	y	ENSMUSG00000021792.16	Prxl2a	chr14	protein_coding	peroxiredoxin like 2A
known_NIR_5442	chr14	40726160	40727598	-	40726160	40735655	A5SS	ENSMUST00000022317.15	known	0.00	0	45	0	45	n	0.03	1	32	1	32	n	0.00	0	50	0	50	n	0.00	0	43	0	43	n	0.02	1	58	1	58	n	0.03	1	31	1	31	n	0.03	2	75	2	75	y	0.03	1	31	1	31	n	0.03	1	34	1	34	n	0.00	0	45	0	45	n	0.00	0	55	0	55	n	0.03	2	70	2	70	y	ENSMUSG00000021792.16	Prxl2a	chr14	protein_coding	peroxiredoxin like 2A
known_NIR_5443	chr14	40726160	40728755	-	40726160	40735655	A5SS	ENSMUST00000022317.15	known	0.00	0	45	0	45	n	0.00	0	32	0	32	n	0.00	0	50	0	50	n	0.00	0	43	0	43	n	0.00	0	58	0	58	n	0.00	0	31	0	31	n	0.00	0	75	0	75	n	0.00	0	31	0	31	n	0.00	0	34	0	34	n	0.04	2	45	2	45	y	0.00	0	55	0	55	n	0.00	0	70	0	70	n	ENSMUSG00000021792.16	Prxl2a	chr14	protein_coding	peroxiredoxin like 2A
known_NIR_5444	chr14	40726160	40735583	-	40726160	40735655	A5SS	ENSMUST00000022317.15	known	0.15	8	45	8	45	y	0.22	9	32	9	32	y	0.14	8	50	8	50	y	0.16	8	43	8	43	y	0.13	9	58	9	58	y	0.11	4	31	4	31	y	0.14	12	75	12	75	y	0.18	7	31	7	31	y	0.13	5	34	5	34	y	0.08	4	45	4	45	y	0.11	7	55	7	55	y	0.17	14	70	14	70	y	ENSMUSG00000021792.16	Prxl2a	chr14	protein_coding	peroxiredoxin like 2A
known_NIR_5445	chr14	40726177	40735583	-	40726160	40735583	A3SS	ENSMUST00000143143.8	known	0.27	3	8	3	8	y	0.00	0	9	0	9	n	0.33	4	8	4	8	y	0.38	5	8	5	8	y	0.44	7	9	7	9	y	0.33	2	4	2	4	n	0.25	4	12	4	12	y	0.12	1	7	1	7	n	0.55	6	5	6	5	y	0.60	6	4	6	4	y	0.42	5	7	5	7	y	0.18	3	14	3	14	y	ENSMUSG00000021792.16	Prxl2a	chr14	protein_coding	peroxiredoxin like 2A
known_NIR_5446	chr14	40726177	40735583	-	40726177	40735655	A5SS	ENSMUST00000118466.8	known	0.08	3	36	3	36	y	0.00	0	21	0	21	n	0.18	4	18	4	18	y	0.11	5	42	5	42	y	0.15	7	41	7	41	y	0.10	2	18	2	18	y	0.08	4	44	4	44	y	0.04	1	26	1	26	n	0.12	6	43	6	43	y	0.08	6	73	6	73	y	0.11	5	42	5	42	y	0.05	3	61	3	61	y	ENSMUSG00000021792.16	Prxl2a	chr14	protein_coding	peroxiredoxin like 2A
known_NIR_5447	chr14	40726177	40735655	-	40726160	40735655	A3SS	ENSMUST00000022317.15	known	0.44	36	45	36	45	y	0.40	21	32	21	32	y	0.26	18	50	18	50	y	0.49	42	43	42	43	y	0.41	41	58	41	58	y	0.37	18	31	18	31	y	0.37	44	75	44	75	y	0.46	26	31	26	31	y	0.56	43	34	43	34	y	0.62	73	45	73	45	y	0.43	42	55	42	55	y	0.47	61	70	61	70	y	ENSMUSG00000021792.16	Prxl2a	chr14	protein_coding	peroxiredoxin like 2A
known_NIR_5448	chr14	40827217	40827469	+	40827217	40827304	A3SS	ENSMUST00000225720.2	known	0.25	187	553	187	553	y	0.31	172	381	172	381	y	0.29	256	626	256	626	y	0.27	306	819	306	819	y	0.24	352	1135	352	1135	y	0.29	196	485	196	485	y	0.25	268	813	268	813	y	0.31	226	511	226	511	y	0.25	182	554	182	554	y	0.22	303	1099	303	1099	y	0.24	171	549	171	549	y	0.25	355	1047	355	1047	y	ENSMUSG00000037798.8	Mat1a	chr14	protein_coding	methionine adenosyltransferase I, alpha
known_NIR_5449	chr14	40875708	40876458	+	40875701	40876458	A5SS	ENSMUST00000225792.2	known	0.01	11	1262	11	1262	y	0.01	10	1420	10	1420	y	0.01	16	1431	16	1431	y	0.01	8	1292	8	1292	y	0.01	13	1778	13	1778	y	0.00	0	983	0	983	n	0.01	11	1596	11	1596	y	0.01	9	953	9	953	y	0.01	12	1172	12	1172	y	0.00	9	1921	9	1921	y	0.00	0	1232	0	1232	n	0.01	12	1258	12	1258	y	ENSMUSG00000037780.4	Mbl1	chr14	protein_coding	mannose-binding lectin (protein A) 1
known_NIR_5450	chr14	4138009	4138658	+	4138009	4138562	A3SS	ENSMUST00000022296.7	known	0.25	2	6	2	6	n	0.00	0	4	0	4	n	0.29	2	5	2	5	n	0.25	3	9	3	9	y	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.09	1	10	1	10	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	ENSMUSG00000021774.14	Ube2e1	chr14	protein_coding	ubiquitin-conjugating enzyme E2E 1
known_NIR_5451	chr14	4191392	4192890	-	4191392	4191595	A5SS&ES	ENSMUST00000156186.2	known	0.50	32	32	32	32	y	0.39	30	46	30	46	y	0.49	53	55	53	55	y	0.58	29	21	29	21	y	0.57	47	36	47	36	y	0.73	35	13	35	13	y	0.54	42	36	42	36	y	0.67	33	16	33	16	y	0.66	31	16	31	16	y	0.59	38	26	38	26	y	0.63	31	18	31	18	y	0.38	26	42	26	42	y	ENSMUSG00000021772.16	Nkiras1	chr14	protein_coding	NFKB inhibitor interacting Ras-like protein 1
known_NIR_5452	chr14	4191392;4191852	4191595;4192728	-	4191392	4192728	cassetteExon	ENSMUST00000133460.2	known	1.00	21.5	0	32;11	0	n	1.00	28.0	0	46;10	0	n	1.00	35.5	0	55;16	0	n	0.89	16.0	2	21;11	2	y	0.85	23.0	4	36;10	4	y	1.00	8.5	0	13;4	0	n	0.92	24.0	2	36;12	2	y	1.00	9.0	0	16;2	0	n	0.85	11.5	2	16;7	2	y	0.91	20.5	2	26;15	2	y	0.93	12.5	1	18;7	1	n	1.00	23.5	0	42;5	0	n	ENSMUSG00000021772.16	Nkiras1	chr14	protein_coding	NFKB inhibitor interacting Ras-like protein 1
known_NIR_5453	chr14	4191392;4191852	4191595;4192890	-	4191392	4192890	cassetteExon	ENSMUST00000132374.9	known	0.40	21.5	32	32;11	32	y	0.46	26.0	30	46;6	30	y	0.37	31.0	53	55;7	53	y	0.28	11.5	29	21;2	29	y	0.34	24.0	47	36;12	47	y	0.26	12.0	35	13;11	35	y	0.34	22.0	42	36;8	42	y	0.27	12.5	33	16;9	33	y	0.27	11.5	31	16;7	31	y	0.33	18.5	38	26;11	38	y	0.30	13.5	31	18;9	31	y	0.50	25.5	26	42;9	26	y	ENSMUSG00000021772.16	Nkiras1	chr14	protein_coding	NFKB inhibitor interacting Ras-like protein 1
known_NIR_5454	chr14	4191392;4192870	4192728;4198373	-	4191392;4193000	4191595;4198373	MXE	ENSMUST00000022294.15	known	0.13	5.0	34.0	0;10	32;36	n	0.09	4.5	45.0	0;9	46;44	n	0.04	2.5	66.0	0;5	55;77	n	0.14	5.0	32.0	2;8	21;43	y	0.21	11.0	41.0	4;18	36;46	y	0.07	2.0	25.0	0;4	13;37	n	0.13	6.5	44.0	2;11	36;52	y	0.09	3.0	31.0	0;6	16;46	n	0.17	5.0	25.0	2;8	16;34	y	0.25	12.0	36.5	2;22	26;47	y	0.11	3.5	28.0	1;6	18;38	n	0.10	4.5	42.5	0;9	42;43	n	ENSMUSG00000021772.16	Nkiras1	chr14	protein_coding	NFKB inhibitor interacting Ras-like protein 1
known_NIR_5455	chr14	4191392;4192870	4192728;4198373	-	4191392;4193000	4192890;4198373	MXE	ENSMUST00000132374.9	known	0.13	5.0	34.0	0;10	32;36	n	0.11	4.5	37.0	0;9	30;44	n	0.04	2.5	65.0	0;5	53;77	n	0.12	5.0	36.0	2;8	29;43	y	0.19	11.0	46.5	4;18	47;46	y	0.05	2.0	36.0	0;4	35;37	n	0.12	6.5	47.0	2;11	42;52	y	0.07	3.0	39.5	0;6	33;46	n	0.13	5.0	32.5	2;8	31;34	y	0.22	12.0	42.5	2;22	38;47	y	0.09	3.5	34.5	1;6	31;38	n	0.12	4.5	34.5	0;9	26;43	n	ENSMUSG00000021772.16	Nkiras1	chr14	protein_coding	NFKB inhibitor interacting Ras-like protein 1
known_NIR_5456	chr14	4191852	4192890	-	4191852	4192728	A5SS&ES	ENSMUST00000156186.2	known	0.50	11	11	11	11	y	0.38	6	10	6	10	y	0.30	7	16	7	16	y	0.15	2	11	2	11	y	0.55	12	10	12	10	y	0.73	11	4	11	4	y	0.40	8	12	8	12	y	0.82	9	2	9	2	y	0.50	7	7	7	7	y	0.42	11	15	11	15	y	0.56	9	7	9	7	y	0.64	9	5	9	5	y	ENSMUSG00000021772.16	Nkiras1	chr14	protein_coding	NFKB inhibitor interacting Ras-like protein 1
known_NIR_5457	chr14	4191852;4192870	4192728;4198373	-	4191852;4193000	4192890;4198373	MXE	ENSMUST00000022294.15	known	0.31	10.5	23.5	11;10	11;36	y	0.28	9.5	25.0	10;9	6;44	y	0.20	10.5	42.0	16;5	7;77	y	0.30	9.5	22.5	11;8	2;43	y	0.33	14.0	29.0	10;18	12;46	y	0.14	4.0	24.0	4;4	11;37	y	0.28	11.5	30.0	12;11	8;52	y	0.13	4.0	27.5	2;6	9;46	y	0.27	7.5	20.5	7;8	7;34	y	0.39	18.5	29.0	15;22	11;47	y	0.22	6.5	23.5	7;6	9;38	y	0.21	7.0	26.0	5;9	9;43	y	ENSMUSG00000021772.16	Nkiras1	chr14	protein_coding	NFKB inhibitor interacting Ras-like protein 1
known_NIR_5458	chr14	4192870	4198373	-	4193000	4198373	A3SS	ENSMUST00000152735.2	known	0.22	10	36	10	36	y	0.17	9	44	9	44	y	0.06	5	77	5	77	y	0.16	8	43	8	43	y	0.28	18	46	18	46	y	0.10	4	37	4	37	y	0.17	11	52	11	52	y	0.12	6	46	6	46	y	0.19	8	34	8	34	y	0.32	22	47	22	47	y	0.14	6	38	6	38	y	0.17	9	43	9	43	y	ENSMUSG00000021772.16	Nkiras1	chr14	protein_coding	NFKB inhibitor interacting Ras-like protein 1
known_NIR_5459	chr14	4192870;4193000	4192966;4198373	-	4192870	4198373	cassetteExon	ENSMUST00000133460.2	known	0.64	18.0	10	0;36	10	n	0.72	23.5	9	3;44	9	y	0.89	38.5	5	0;77	5	n	0.73	21.5	8	0;43	8	n	0.57	24.0	18	2;46	18	y	0.82	18.5	4	0;37	4	n	0.72	29.0	11	6;52	11	y	0.79	23.0	6	0;46	6	n	0.69	17.5	8	1;34	8	n	0.53	24.5	22	2;47	22	y	0.78	21.5	6	5;38	6	y	0.71	22.5	9	2;43	9	y	ENSMUSG00000021772.16	Nkiras1	chr14	protein_coding	NFKB inhibitor interacting Ras-like protein 1
known_NIR_5460	chr14	4198737	4199236	+	4198477	4199236	A5SS	ENSMUST00000147121.2	known	0.97	250	9	250	9	y	0.97	305	10	305	10	y	0.98	407	8	407	8	y	0.95	281	16	281	16	y	0.99	408	6	408	6	y	0.99	262	2	262	2	y	0.98	376	8	376	8	y	0.98	226	4	226	4	y	0.98	283	7	283	7	y	0.98	378	7	378	7	y	0.97	342	12	342	12	y	0.95	303	15	303	15	y	ENSMUSG00000012405.17	Rpl15	chr14	protein_coding	ribosomal protein L15
known_NIR_5461	chr14	4198851	4199236	+	4198477	4199236	A5SS	ENSMUST00000147121.2	known	0.64	16	9	16	9	y	0.47	9	10	9	10	y	0.78	29	8	29	8	y	0.54	19	16	19	16	y	0.75	18	6	18	6	y	0.88	15	2	15	2	y	0.60	12	8	12	8	y	0.67	8	4	8	4	y	0.56	9	7	9	7	y	0.68	15	7	15	7	y	0.57	16	12	16	12	y	0.44	12	15	12	15	y	ENSMUSG00000012405.17	Rpl15	chr14	protein_coding	ribosomal protein L15
known_NIR_5462	chr14	4198851	4199236	+	4198737	4199236	A5SS	ENSMUST00000080281.14	known	0.06	16	250	16	250	y	0.03	9	305	9	305	y	0.07	29	407	29	407	y	0.06	19	281	19	281	y	0.04	18	408	18	408	y	0.05	15	262	15	262	y	0.03	12	376	12	376	y	0.03	8	226	8	226	y	0.03	9	283	9	283	y	0.04	15	378	15	378	y	0.04	16	342	16	342	y	0.04	12	303	12	303	y	ENSMUSG00000012405.17	Rpl15	chr14	protein_coding	ribosomal protein L15
known_NIR_5463	chr14	4198851	4199236	+	4198873	4199236	A5SS	ENSMUST00000079419.12	known	0.26	16	46	16	46	y	0.19	9	39	9	39	y	0.33	29	60	29	60	y	0.25	19	57	19	57	y	0.26	18	52	18	52	y	0.28	15	38	15	38	y	0.24	12	39	12	39	y	0.25	8	24	8	24	y	0.21	9	34	9	34	y	0.33	15	31	15	31	y	0.30	16	38	16	38	y	0.27	12	33	12	33	y	ENSMUSG00000012405.17	Rpl15	chr14	protein_coding	ribosomal protein L15
known_NIR_5464	chr14	4198873	4199236	+	4198477	4199236	A5SS	ENSMUST00000147121.2	known	0.84	46	9	46	9	y	0.80	39	10	39	10	y	0.88	60	8	60	8	y	0.78	57	16	57	16	y	0.90	52	6	52	6	y	0.95	38	2	38	2	y	0.83	39	8	39	8	y	0.86	24	4	24	4	y	0.83	34	7	34	7	y	0.82	31	7	31	7	y	0.76	38	12	38	12	y	0.69	33	15	33	15	y	ENSMUSG00000012405.17	Rpl15	chr14	protein_coding	ribosomal protein L15
known_NIR_5465	chr14	4198873	4199236	+	4198737	4199236	A5SS	ENSMUST00000080281.14	known	0.16	46	250	46	250	y	0.11	39	305	39	305	y	0.13	60	407	60	407	y	0.17	57	281	57	281	y	0.11	52	408	52	408	y	0.13	38	262	38	262	y	0.09	39	376	39	376	y	0.10	24	226	24	226	y	0.11	34	283	34	283	y	0.08	31	378	31	378	y	0.10	38	342	38	342	y	0.10	33	303	33	303	y	ENSMUSG00000012405.17	Rpl15	chr14	protein_coding	ribosomal protein L15
known_NIR_5466	chr14	45373427	45377875	-	45373430	45377875	A3SS	ENSMUST00000139526.9	known	0.40	2	3	2	3	n	0.08	1	12	1	12	n	0.00	0	1	0	1	n	0.17	1	5	1	5	n	0.43	3	4	3	4	n	1.00	1	0	1	0	n	0.15	2	11	2	11	y	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.42	5	7	5	7	y	0.17	1	5	1	5	n	0.00	0	9	0	9	n	ENSMUSG00000021830.15	Txndc16	chr14	protein_coding	thioredoxin domain containing 16
known_NIR_5467	chr14	4544100	4642728	-	4544100	4642721	A5SS	ENSMUST00000022303.17	known	1.00	9	0	9	0	n	0.33	1	2	1	2	n	0.67	10	5	10	5	y	0.65	11	6	11	6	y	0.63	22	13	22	13	y	0.46	6	7	6	7	y	0.64	7	4	7	4	y	0.29	4	10	4	10	y	0.56	5	4	5	4	n	0.45	9	11	9	11	y	0.65	11	6	11	6	y	0.69	11	5	11	5	y	ENSMUSG00000021779.20	Thrb	chr14	protein_coding	thyroid hormone receptor beta
known_NIR_5468	chr14	45544088	45556160	-	45544088	45555834	5pMXE	ENSMUST00000022378.9	known	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.03	2	72	2	72	y	0.00	0	21	0	21	n	0.00	0	37	0	37	n	0.04	1	25	1	25	n	0.00	0	24	0	24	n	0.00	0	20	0	20	n	0.00	0	11	0	11	n	0.05	1	19	1	19	n	0.00	0	15	0	15	n	0.00	0	18	0	18	n	ENSMUSG00000021831.10	Ero1a	chr14	protein_coding	endoplasmic reticulum oxidoreductase 1 alpha
known_NIR_5469	chr14	45567389	45568287	+	45567978	45568287	A5SS&ES	ENSMUST00000226431.2	known	1.00	203	1	203	1	n	0.98	163	4	163	4	y	0.99	299	2	299	2	y	1.00	296	0	296	0	n	1.00	292	0	292	0	n	0.99	138	1	138	1	n	0.98	258	4	258	4	y	1.00	148	0	148	0	n	1.00	224	1	224	1	n	1.00	297	0	297	0	n	0.99	177	2	177	2	y	1.00	313	0	313	0	n	ENSMUSG00000021832.9	Psmc6	chr14	protein_coding	proteasome (prosome, macropain) 26S subunit, ATPase, 6
known_NIR_5470	chr14	45567389;45567978	45567823;45568287	+	45567389	45568287	cassetteExon	ENSMUST00000022380.9	known	0.01	1.5	203	2;1	203	n	0.01	2.0	163	0;4	163	n	0.00	1.0	299	0;2	299	n	0.00	0.0	296	0;0	296	n	0.00	0.0	292	0;0	292	n	0.01	1.0	138	1;1	138	n	0.01	3.0	258	2;4	258	y	0.01	1.0	148	2;0	148	n	0.00	0.5	224	0;1	224	n	0.00	0.0	297	0;0	297	n	0.01	1.5	177	1;2	177	n	0.00	0.0	313	0;0	313	n	ENSMUSG00000021832.9	Psmc6	chr14	protein_coding	proteasome (prosome, macropain) 26S subunit, ATPase, 6
known_NIR_5471	chr14	45567560	45568287	+	45567389	45568287	A5SS	ENSMUST00000022380.9	known	0.00	1	203	1	203	n	0.00	0	163	0	163	n	0.00	0	299	0	299	n	0.00	0	296	0	296	n	0.01	2	292	2	292	y	0.01	2	138	2	138	y	0.01	2	258	2	258	y	0.00	0	148	0	148	n	0.02	5	224	5	224	y	0.01	3	297	3	297	y	0.02	3	177	3	177	y	0.01	3	313	3	313	y	ENSMUSG00000021832.9	Psmc6	chr14	protein_coding	proteasome (prosome, macropain) 26S subunit, ATPase, 6
known_NIR_5472	chr14	45567560	45568287	+	45567640	45568287	A5SS	ENSMUST00000227148.2	known	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.50	2	2	2	2	n	0.50	2	2	2	2	n	1.00	2	0	2	0	n	0.00	0	2	0	2	n	0.50	5	5	5	5	y	0.50	3	3	3	3	n	0.33	3	6	3	6	n	0.30	3	7	3	7	y	ENSMUSG00000021832.9	Psmc6	chr14	protein_coding	proteasome (prosome, macropain) 26S subunit, ATPase, 6
known_NIR_5473	chr14	45567640	45568287	+	45567389	45568287	A5SS	ENSMUST00000022380.9	known	0.01	2	203	2	203	y	0.01	1	163	1	163	n	0.02	5	299	5	299	y	0.01	2	296	2	296	y	0.01	2	292	2	292	y	0.01	2	138	2	138	y	0.00	0	258	0	258	n	0.01	2	148	2	148	y	0.02	5	224	5	224	y	0.01	3	297	3	297	y	0.03	6	177	6	177	y	0.02	7	313	7	313	y	ENSMUSG00000021832.9	Psmc6	chr14	protein_coding	proteasome (prosome, macropain) 26S subunit, ATPase, 6
known_NIR_5474	chr14	45618473	45619013	-	45618455	45619013	A3SS	ENSMUST00000046191.9	known	0.00	1	336	1	336	n	0.00	0	323	0	323	n	0.01	2	382	2	382	y	0.01	3	458	3	458	y	0.00	0	499	0	499	n	0.01	2	226	2	226	y	0.00	1	462	1	462	n	0.00	0	212	0	212	n	0.01	2	311	2	311	y	0.01	4	460	4	460	y	0.01	2	363	2	363	y	0.00	1	466	1	466	n	ENSMUSG00000037722.9	Gnpnat1	chr14	protein_coding	glucosamine-phosphate N-acetyltransferase 1
known_NIR_5475	chr14	45619140;45619535	45619470;45620851	-	45619140	45620851	cassetteExon	ENSMUST00000046191.9	known	0.02	7.0	326	6;8	326	y	0.01	2.0	298	2;2	298	y	0.01	3.5	371	5;2	371	y	0.00	0.5	385	1;0	385	n	0.01	3.5	403	2;5	403	y	0.00	1.0	216	0;2	216	n	0.00	2.0	403	2;2	403	y	0.01	2.0	215	2;2	215	y	0.00	1.0	318	1;1	318	n	0.00	0.5	382	0;1	382	n	0.00	0.0	300	0;0	300	n	0.00	0.5	436	1;0	436	n	ENSMUSG00000037722.9	Gnpnat1	chr14	protein_coding	glucosamine-phosphate N-acetyltransferase 1
known_NIR_5476	chr14	45622205	45625905	-	45622205	45626205	A5SS	ENSMUST00000046191.9	known	0.00	0	191	0	191	n	0.00	0	154	0	154	n	0.01	2	202	2	202	y	0.01	2	220	2	220	y	0.00	0	204	0	204	n	0.00	0	136	0	136	n	0.01	2	244	2	244	y	0.01	1	155	1	155	n	0.00	0	193	0	193	n	0.00	1	240	1	240	n	0.00	0	154	0	154	n	0.01	2	253	2	253	y	ENSMUSG00000037722.9	Gnpnat1	chr14	protein_coding	glucosamine-phosphate N-acetyltransferase 1
known_NIR_5477	chr14	45622205	45625919	-	45622205	45625905	A5SS	ENSMUST00000227865.2	known	1.00	7	0	7	0	n	1.00	18	0	18	0	n	0.87	13	2	13	2	y	0.86	12	2	12	2	y	1.00	12	0	12	0	n	1.00	7	0	7	0	n	0.89	17	2	17	2	y	0.89	8	1	8	1	n	1.00	6	0	6	0	n	0.94	16	1	16	1	n	1.00	9	0	9	0	n	0.83	10	2	10	2	y	ENSMUSG00000037722.9	Gnpnat1	chr14	protein_coding	glucosamine-phosphate N-acetyltransferase 1
known_NIR_5478	chr14	45622205	45625919	-	45622205	45626205	A5SS	ENSMUST00000046191.9	known	0.04	7	191	7	191	y	0.10	18	154	18	154	y	0.06	13	202	13	202	y	0.05	12	220	12	220	y	0.06	12	204	12	204	y	0.05	7	136	7	136	y	0.07	17	244	17	244	y	0.05	8	155	8	155	y	0.03	6	193	6	193	y	0.06	16	240	16	240	y	0.06	9	154	9	154	y	0.04	10	253	10	253	y	ENSMUSG00000037722.9	Gnpnat1	chr14	protein_coding	glucosamine-phosphate N-acetyltransferase 1
known_NIR_5479	chr14	45713570	45713875	-	45713570	45715097	A5SS	ENSMUST00000141424.2	known	0.15	7	41	7	41	y	0.17	7	33	7	33	y	0.14	6	38	6	38	y	0.15	16	91	16	91	y	0.15	27	154	27	154	y	0.14	5	31	5	31	y	0.35	37	70	37	70	y	0.21	14	52	14	52	y	0.06	5	74	5	74	y	0.20	20	82	20	82	y	0.12	7	51	7	51	y	0.17	12	58	12	58	y	ENSMUSG00000037712.18	Fermt2	chr14	protein_coding	fermitin family member 2
known_NIR_5480	chr14	45713570	45715097	-	45713570	45719889	A5SS	ENSMUST00000045905.15	known	0.41	41	58	41	58	y	0.39	33	51	33	51	y	0.12	38	283	38	283	y	0.47	91	101	91	101	y	0.46	154	184	154	184	y	0.19	31	132	31	132	y	0.39	70	109	70	109	y	0.27	52	140	52	140	y	0.46	74	86	74	86	y	0.46	82	98	82	98	y	0.46	51	61	51	61	y	0.36	58	101	58	101	y	ENSMUSG00000037712.18	Fermt2	chr14	protein_coding	fermitin family member 2
known_NIR_5481	chr14	45713570;45713907	45713875;45719889	-	45713570	45719889	cassetteExon	ENSMUST00000045905.15	known	0.09	6.0	58	7;5	58	y	0.08	4.5	51	7;2	51	y	0.02	5.5	283	6;5	283	y	0.08	8.5	101	16;1	101	n	0.09	19.0	184	27;11	184	y	0.03	3.5	132	5;2	132	y	0.21	29.5	109	37;22	109	y	0.05	7.0	140	14;0	140	n	0.04	3.5	86	5;2	86	y	0.10	10.5	98	20;1	98	n	0.05	3.5	61	7;0	61	n	0.07	7.5	101	12;3	101	y	ENSMUSG00000037712.18	Fermt2	chr14	protein_coding	fermitin family member 2
known_NIR_5482	chr14	45742187	45756353	-	45742187	45766882	A5SS	ENSMUST00000045905.15	known	0.00	0	50	0	50	n	0.00	0	39	0	39	n	0.00	1	214	1	214	n	0.00	0	78	0	78	n	0.00	0	182	0	182	n	0.00	0	140	0	140	n	0.00	0	133	0	133	n	0.00	0	118	0	118	n	0.03	2	65	2	65	y	0.00	0	90	0	90	n	0.00	0	64	0	64	n	0.00	0	72	0	72	n	ENSMUSG00000037712.18	Fermt2	chr14	protein_coding	fermitin family member 2
known_NIR_5483	chr14	45833121	45839022	-	45833121;45836642	45836559;45839022	ES	ENSMUST00000111828.4	known	0.33	12	24.5	12	24;25	y	0.34	8	15.5	8	15;16	y	0.19	10	43.0	10	39;47	y	0.45	16	19.5	16	23;16	y	0.23	11	36.5	11	39;34	y	0.24	6	19.0	6	15;23	y	0.28	14	36.0	14	31;41	y	0.25	8	24.0	8	20;28	y	0.32	10	21.0	10	19;23	y	0.42	20	28.0	20	29;27	y	0.24	6	19.5	6	15;24	y	0.44	15	19.0	15	16;22	y	ENSMUSG00000037697.20	Ddhd1	chr14	protein_coding	DDHD domain containing 1
known_NIR_5484	chr14	45848147	45851620	-	45848211	45851620	A3SS	ENSMUST00000111828.4	known	0.07	2	25	2	25	y	0.00	0	19	0	19	n	0.00	0	61	0	61	n	0.00	0	48	0	48	n	0.02	1	45	1	45	n	0.08	1	12	1	12	n	0.03	1	33	1	33	n	0.00	0	22	0	22	n	0.00	0	19	0	19	n	0.00	0	39	0	39	n	0.00	0	23	0	23	n	0.00	0	15	0	15	n	ENSMUSG00000037697.20	Ddhd1	chr14	protein_coding	DDHD domain containing 1
known_NIR_5485	chr14	45858297	45867037	-	45858297	45860298	5pMXE	ENSMUST00000129599.8	known	0.91	10	1	10	1	n	0.58	7	5	7	5	y	0.96	25	1	25	1	n	0.65	15	8	15	8	y	0.76	19	6	19	6	y	1.00	7	0	7	0	n	0.84	16	3	16	3	y	1.00	5	0	5	0	n	0.92	11	1	11	1	n	0.86	12	2	12	2	y	0.80	16	4	16	4	y	0.67	10	5	10	5	y	ENSMUSG00000037697.20	Ddhd1	chr14	protein_coding	DDHD domain containing 1
known_NIR_5486	chr14	45858297;45860399	45860298;45867037	-	45858297	45867037	cassetteExon	ENSMUST00000111828.4	known	0.05	0.5	10	1;0	10	n	0.26	2.5	7	5;0	7	n	0.07	2.0	25	1;3	25	n	0.23	4.5	15	8;1	15	n	0.14	3.0	19	6;0	19	n	0.22	2.0	7	0;4	7	n	0.09	1.5	16	3;0	16	n	0.17	1.0	5	0;2	5	n	0.04	0.5	11	1;0	11	n	0.27	4.5	12	2;7	12	y	0.14	2.5	16	4;1	16	n	0.26	3.5	10	5;2	10	y	ENSMUSG00000037697.20	Ddhd1	chr14	protein_coding	DDHD domain containing 1
known_NIR_5487	chr14	47054939	47055873	-	47054939	47059558	A5SS	ENSMUST00000111817.8	known	0.09	2	21	2	21	y	0.06	1	17	1	17	n	0.00	0	48	0	48	n	0.00	0	27	0	27	n	0.06	3	45	3	45	y	0.05	1	20	1	20	n	0.12	4	28	4	28	y	0.00	0	22	0	22	n	0.00	0	20	0	20	n	0.10	5	44	5	44	y	0.07	2	27	2	27	y	0.27	8	22	8	22	y	ENSMUSG00000062014.14	Gmfb	chr14	protein_coding	glia maturation factor, beta
known_NIR_5488	chr14	47548570	47550942	+	47548570	47556869	A3SS	ENSMUST00000166743.9	known	0.03	2	56	2	56	y	0.00	0	38	0	38	n	0.00	0	58	0	58	n	0.06	3	49	3	49	y	0.06	5	79	5	79	y	0.00	0	57	0	57	n	0.00	0	42	0	42	n	0.02	1	49	1	49	n	0.00	0	53	0	53	n	0.04	3	68	3	68	y	0.00	0	57	0	57	n	0.02	2	82	2	82	y	ENSMUSG00000021840.18	Mapk1ip1l	chr14	protein_coding	mitogen-activated protein kinase 1 interacting protein 1-like
known_NIR_5489	chr14	47611436	47616980	+	47611409	47616980	A5SS	ENSMUST00000142734.8	known	0.50	4	4	4	4	n	0.50	2	2	2	2	n	0.60	3	2	3	2	n	0.25	1	3	1	3	n	0.92	11	1	11	1	n	0.64	9	5	9	5	y	0.86	12	2	12	2	y	1.00	7	0	7	0	n	1.00	3	0	3	0	n	0.75	9	3	9	3	y	1.00	7	0	7	0	n	0.50	2	2	2	2	n	ENSMUSG00000050335.18	Lgals3	chr14	protein_coding	lectin, galactose binding, soluble 3
known_NIR_5490	chr14	47710174	47763662	+	47710174;47738327	47738251;47763662	ES	ENSMUST00000163324.8	known	0.77	5	1.5	5	3;0	n	-	-	-	-	-	-	0.64	7	4.0	7	7;1	n	0.71	5	2.0	5	2;2	n	0.81	11	2.5	11	3;2	y	0.93	7	0.5	7	0;1	n	0.73	4	1.5	4	1;2	n	0.78	7	2.0	7	4;0	n	0.80	6	1.5	6	2;1	n	0.62	5	3.0	5	1;5	n	0.75	3	1.0	3	2;0	n	0.91	10	1.0	10	0;2	n	ENSMUSG00000037536.15	Fbxo34	chr14	protein_coding	F-box protein 34
known_NIR_5491	chr14	47710174	47766632	+	47763771	47766632	A5SS&ES	ENSMUST00000226395.2	known	0.00	0	16	0	16	n	0.23	3	10	3	10	y	0.12	3	21	3	21	y	0.00	0	8	0	8	n	0.06	2	29	2	29	y	0.00	0	8	0	8	n	0.00	0	17	0	17	n	0.20	2	8	2	8	y	0.13	2	13	2	13	y	0.13	3	20	3	20	y	0.25	4	12	4	12	y	0.13	3	20	3	20	y	ENSMUSG00000037536.15	Fbxo34	chr14	protein_coding	F-box protein 34
known_NIR_5492	chr14	47710174;47738327	47738251;47766632	+	47710174	47766632	cassetteExon	ENSMUST00000043112.9	known	1.00	2.5	0	3;2	0	n	0.00	0.0	3	0;0	3	n	0.65	5.5	3	7;4	3	y	1.00	1.0	0	2;0	0	n	0.56	2.5	2	3;2	2	n	-	-	-	-	-	-	1.00	1.0	0	1;1	0	n	0.60	3.0	2	4;2	2	n	0.43	1.5	2	2;1	2	n	0.14	0.5	3	1;0	3	n	0.27	1.5	4	2;1	4	n	0.00	0.0	3	0;0	3	n	ENSMUSG00000037536.15	Fbxo34	chr14	protein_coding	F-box protein 34
known_NIR_5493	chr14	47710174;47763771	47763662;47766632	+	47710174	47766632	cassetteExon	ENSMUST00000043112.9	known	1.00	10.5	0	5;16	0	n	0.62	5.0	3	0;10	3	n	0.82	14.0	3	7;21	3	y	1.00	6.5	0	5;8	0	n	0.91	20.0	2	11;29	2	y	1.00	7.5	0	7;8	0	n	1.00	10.5	0	4;17	0	n	0.79	7.5	2	7;8	2	y	0.83	9.5	2	6;13	2	y	0.81	12.5	3	5;20	3	y	0.65	7.5	4	3;12	4	y	0.83	15.0	3	10;20	3	y	ENSMUSG00000037536.15	Fbxo34	chr14	protein_coding	F-box protein 34
known_NIR_5494	chr14	47710174;47763771	47763662;47766632	+	47710174;47738327	47738251;47766632	MXE	ENSMUST00000227162.2	known	0.81	10.5	2.5	5;16	3;2	y	1.00	5.0	0.0	0;10	0;0	n	0.72	14.0	5.5	7;21	7;4	y	0.87	6.5	1.0	5;8	2;0	n	0.89	20.0	2.5	11;29	3;2	y	1.00	7.5	0.0	7;8	0;0	n	0.91	10.5	1.0	4;17	1;1	n	0.71	7.5	3.0	7;8	4;2	y	0.86	9.5	1.5	6;13	2;1	n	0.96	12.5	0.5	5;20	1;0	n	0.83	7.5	1.5	3;12	2;1	n	1.00	15.0	0.0	10;20	0;0	n	ENSMUSG00000037536.15	Fbxo34	chr14	protein_coding	F-box protein 34
known_NIR_5495	chr14	47738327	47766632	+	47738327;47763771	47763662;47766632	ES	ENSMUST00000163324.8	known	0.20	2	8.0	2	0;16	n	0.00	0	5.0	0	0;10	n	0.27	4	11.0	4	1;21	n	0.00	0	5.0	0	2;8	n	0.11	2	15.5	2	2;29	y	0.00	0	4.5	0	1;8	n	0.10	1	9.5	1	2;17	n	0.33	2	4.0	2	0;8	n	0.12	1	7.0	1	1;13	n	0.00	0	12.5	0	5;20	n	0.14	1	6.0	1	0;12	n	0.00	0	11.0	0	2;20	n	ENSMUSG00000037536.15	Fbxo34	chr14	protein_coding	F-box protein 34
known_NIR_5496	chr14	47738327	47766632	+	47763771	47766632	A5SS&ES	ENSMUST00000226395.2	known	0.11	2	16	2	16	y	0.00	0	10	0	10	n	0.16	4	21	4	21	y	0.00	0	8	0	8	n	0.06	2	29	2	29	y	0.00	0	8	0	8	n	0.06	1	17	1	17	n	0.20	2	8	2	8	y	0.07	1	13	1	13	n	0.00	0	20	0	20	n	0.08	1	12	1	12	n	0.00	0	20	0	20	n	ENSMUSG00000037536.15	Fbxo34	chr14	protein_coding	F-box protein 34
known_NIR_5497	chr14	47941734	47943220	+	47941734;47941945	47941877;47943220	ES	ENSMUST00000187839.8	known	0.61	11	7.0	11	6;8	y	0.73	12	4.5	12	4;5	y	0.48	15	16.0	15	18;14	y	0.53	5	4.5	5	4;5	y	0.33	6	12.0	6	11;13	y	0.42	4	5.5	4	7;4	y	0.40	12	18.0	12	18;18	y	0.56	12	9.5	12	9;10	y	0.60	14	9.5	14	6;13	y	0.64	16	9.0	16	11;7	y	0.65	12	6.5	12	10;3	y	0.50	14	14.0	14	15;13	y	ENSMUSG00000021843.18	Ktn1	chr14	protein_coding	kinectin 1
known_NIR_5498	chr14	47952179	47957653	+	47952179;47954417	47954331;47957653	ES	ENSMUST00000187839.8	known	0.78	21	6.0	21	4;8	y	0.75	15	5.0	15	5;5	y	0.67	29	14.5	29	11;18	y	0.72	14	5.5	14	7;4	y	0.67	20	10.0	20	7;13	y	0.65	16	8.5	16	8;9	y	0.53	26	23.0	26	21;25	y	0.64	17	9.5	17	5;14	y	0.70	21	9.0	21	10;8	y	0.70	23	10.0	23	6;14	y	0.69	20	9.0	20	12;6	y	0.73	28	10.5	28	9;12	y	ENSMUSG00000021843.18	Ktn1	chr14	protein_coding	kinectin 1
known_NIR_5499	chr14	47962427	47963683	+	47962427	47963386	A3SS	ENSMUST00000188263.2	known	0.79	31	8	31	8	y	0.89	25	3	25	3	y	0.66	27	14	27	14	y	0.87	26	4	26	4	y	0.82	36	8	36	8	y	0.78	21	6	21	6	y	0.48	23	25	23	25	y	0.83	20	4	20	4	y	0.76	22	7	22	7	y	0.81	39	9	39	9	y	0.73	27	10	27	10	y	0.84	36	7	36	7	y	ENSMUSG00000021843.18	Ktn1	chr14	protein_coding	kinectin 1
known_NIR_5500	chr14	47962427	47963683	+	47962427;47963457	47963386;47963683	ES	ENSMUST00000187839.8	known	0.84	31	6.0	31	8;4	y	0.91	25	2.5	25	3;2	y	0.70	27	11.5	27	14;9	y	0.83	26	5.5	26	4;7	y	0.82	36	8.0	36	8;8	y	0.75	21	7.0	21	6;8	y	0.51	23	22.0	23	25;19	y	0.85	20	3.5	20	4;3	y	0.76	22	7.0	22	7;7	y	0.83	39	8.0	39	9;7	y	0.77	27	8.0	27	10;6	y	0.85	36	6.5	36	7;6	y	ENSMUSG00000021843.18	Ktn1	chr14	protein_coding	kinectin 1
known_NIR_5501	chr14	47963766	47967797	+	47963766;47964011	47963928;47967797	ES	ENSMUST00000187839.8	known	0.45	12	14.5	12	14;15	y	0.57	18	13.5	18	12;15	y	0.46	24	28.5	24	29;28	y	0.47	15	17.0	15	21;13	y	0.49	18	18.5	18	12;25	y	0.62	24	15.0	24	15;15	y	0.67	42	21.0	42	20;22	y	0.38	7	11.5	7	12;11	y	0.60	16	10.5	16	11;10	y	0.54	34	28.5	34	28;29	y	0.55	19	15.5	19	15;16	y	0.55	28	23.0	28	21;25	y	ENSMUSG00000021843.18	Ktn1	chr14	protein_coding	kinectin 1
known_NIR_5502	chr14	47970779	47973557	+	47970779	47971612	A3SS&ES	ENSMUST00000191018.7	known	0.83	38	8	38	8	y	0.73	19	7	19	7	y	0.72	41	16	41	16	y	0.79	41	11	41	11	y	0.88	44	6	44	6	y	0.87	20	3	20	3	y	0.74	60	21	60	21	y	0.85	11	2	11	2	y	0.80	36	9	36	9	y	0.84	57	11	57	11	y	0.75	38	13	38	13	y	0.77	34	10	34	10	y	ENSMUSG00000021843.18	Ktn1	chr14	protein_coding	kinectin 1
known_NIR_5503	chr14	47970779	47973557	+	47970779;47971721	47971612;47973557	ES	ENSMUST00000187839.8	known	0.84	38	7.0	38	8;6	y	0.81	19	4.5	19	7;2	y	0.76	41	13.0	41	16;10	y	0.81	41	9.5	41	11;8	y	0.89	44	5.5	44	6;5	y	0.83	20	4.0	20	3;5	y	0.77	60	18.0	60	21;15	y	0.81	11	2.5	11	2;3	y	0.84	36	7.0	36	9;5	y	0.89	57	7.0	57	11;3	y	0.83	38	8.0	38	13;3	y	0.84	34	6.5	34	10;3	y	ENSMUSG00000021843.18	Ktn1	chr14	protein_coding	kinectin 1
known_NIR_5504	chr14	47970779;47971727	47971612;47973557	+	47970779	47973557	cassetteExon	ENSMUST00000189986.7	known	0.10	4.0	38	8;0	38	n	0.27	7.0	19	7;7	19	y	0.21	11.0	41	16;6	41	y	0.14	6.5	41	11;2	41	y	0.07	3.5	44	6;1	44	n	0.09	2.0	20	3;1	20	n	0.19	14.0	60	21;7	60	y	0.15	2.0	11	2;2	11	y	0.16	7.0	36	9;5	36	y	0.11	7.0	57	11;3	57	y	0.16	7.5	38	13;2	38	y	0.14	5.5	34	10;1	34	n	ENSMUSG00000021843.18	Ktn1	chr14	protein_coding	kinectin 1
known_NIR_5505	chr14	47971727	47973557	+	47971721	47973557	A5SS	ENSMUST00000187839.8	known	0.00	0	6	0	6	n	0.78	7	2	7	2	n	0.38	6	10	6	10	y	0.20	2	8	2	8	y	0.17	1	5	1	5	n	0.17	1	5	1	5	n	0.32	7	15	7	15	y	0.40	2	3	2	3	n	0.50	5	5	5	5	y	0.50	3	3	3	3	n	0.40	2	3	2	3	n	0.25	1	3	1	3	n	ENSMUSG00000021843.18	Ktn1	chr14	protein_coding	kinectin 1
known_NIR_5506	chr14	48358690	48477667	+	48358690;48405783	48405654;48477667	ES	ENSMUST00000073150.6	known	0.14	4	25.0	4	14;36	y	0.15	4	22.0	4	10;34	y	0.05	1	17.5	1	15;20	n	0.00	0	30.5	0	15;46	n	0.09	4	43.0	4	35;51	y	0.00	0	15.5	0	15;16	n	0.04	1	23.0	1	17;29	n	0.22	4	14.0	4	16;12	y	0.14	3	18.0	3	15;21	y	0.05	2	37.0	2	21;53	y	0.24	7	22.5	7	16;29	y	0.00	0	28.0	0	23;33	n	ENSMUSG00000021846.10	Peli2	chr14	protein_coding	pellino 2
known_NIR_5507	chr14	48358690	48477667	+	48405783	48477667	5pMXE	ENSMUST00000227362.2	known	0.10	4	36	4	36	y	0.11	4	34	4	34	y	0.05	1	20	1	20	n	0.00	0	46	0	46	n	0.07	4	51	4	51	y	0.00	0	16	0	16	n	0.03	1	29	1	29	n	0.25	4	12	4	12	y	0.12	3	21	3	21	y	0.04	2	53	2	53	y	0.19	7	29	7	29	y	0.00	0	33	0	33	n	ENSMUSG00000021846.10	Peli2	chr14	protein_coding	pellino 2
known_NIR_5508	chr14	48405783	48416598	+	48405783	48477667	A3SS	ENSMUST00000073150.6	known	0.00	0	36	0	36	n	0.00	0	34	0	34	n	0.05	1	20	1	20	n	0.00	0	46	0	46	n	0.04	2	51	2	51	y	0.00	0	16	0	16	n	0.00	0	29	0	29	n	0.20	3	12	3	12	y	0.00	0	21	0	21	n	0.02	1	53	1	53	n	0.00	0	29	0	29	n	0.00	0	33	0	33	n	ENSMUSG00000021846.10	Peli2	chr14	protein_coding	pellino 2
known_NIR_5509	chr14	48490222	48517475	+	48490222	48493473	3pMXE	ENSMUST00000073150.6	known	0.00	0	21	0	21	n	0.12	3	23	3	23	y	0.00	0	18	0	18	n	0.00	0	27	0	27	n	0.18	5	23	5	23	y	0.18	4	18	4	18	y	0.21	5	19	5	19	y	0.12	3	22	3	22	y	0.15	2	11	2	11	y	0.17	5	25	5	25	y	0.14	3	19	3	19	y	0.03	1	31	1	31	n	ENSMUSG00000021846.10	Peli2	chr14	protein_coding	pellino 2
known_NIR_5510	chr14	48689514;48692767	48692538;48709781	+	48689514	48709781	cassetteExon	ENSMUST00000227440.2	known	0.20	2.0	8	2;2	8	y	0.04	0.5	11	1;0	11	n	0.05	1.0	21	1;1	21	n	0.03	1.0	28	0;2	28	n	0.09	2.5	25	1;4	25	n	0.00	0.0	16	0;0	16	n	0.00	0.0	16	0;0	16	n	0.03	1.0	30	0;2	30	n	0.19	2.5	11	3;2	11	y	0.00	0.0	22	0;0	22	n	0.07	1.0	14	0;2	14	n	0.06	1.5	24	3;0	24	n	ENSMUSG00000036339.19	Tmem260	chr14	protein_coding	transmembrane protein 260
known_NIR_5511	chr14	48746582	48757793	+	48746582	48749360	3pMXE	ENSMUST00000124720.8	known	0.04	1	24	1	24	n	0.07	1	14	1	14	n	0.03	1	33	1	33	n	0.08	3	35	3	35	y	0.11	6	50	6	50	y	0.04	1	26	1	26	n	0.06	3	47	3	47	y	0.00	0	23	0	23	n	0.20	3	12	3	12	y	0.11	4	34	4	34	y	0.16	3	16	3	16	y	0.05	2	37	2	37	y	ENSMUSG00000036339.19	Tmem260	chr14	protein_coding	transmembrane protein 260
known_NIR_5512	chr14	49255017	49260656	-	49255017	49256859	5pMXE	ENSMUST00000160833.2	known	0.00	0	46	0	46	n	0.05	2	41	2	41	y	0.00	0	72	0	72	n	0.03	1	38	1	38	n	0.00	0	83	0	83	n	0.00	0	27	0	27	n	0.00	0	47	0	47	n	0.00	0	31	0	31	n	0.00	0	36	0	36	n	0.00	0	47	0	47	n	0.00	0	36	0	36	n	0.00	0	50	0	50	n	ENSMUSG00000061244.15	Exoc5	chr14	protein_coding	exocyst complex component 5
known_NIR_5513	chr14	49255017	49260656	-	49255017;49256979	49256859;49260656	ES	ENSMUST00000162175.9	known	0.00	0	38.5	0	46;31	n	0.06	2	31.0	2	41;21	y	0.00	0	65.0	0	72;58	n	0.03	1	32.5	1	38;27	n	0.00	0	65.5	0	83;48	n	0.00	0	23.5	0	27;20	n	0.00	0	42.0	0	47;37	n	0.00	0	28.5	0	31;26	n	0.00	0	35.5	0	36;35	n	0.00	0	38.0	0	47;29	n	0.00	0	33.5	0	36;31	n	0.00	0	38.5	0	50;27	n	ENSMUSG00000061244.15	Exoc5	chr14	protein_coding	exocyst complex component 5
known_NIR_5514	chr14	49311199	49316152	+	49311199;49311651	49311427;49316152	ES	ENSMUST00000227410.2	known	0.00	0	13.5	0	3;24	n	0.00	0	4.0	0	0;8	n	0.11	1	8.0	1	0;16	n	0.21	2	7.5	2	5;10	y	0.00	0	11.5	0	4;19	n	0.00	0	3.0	0	2;4	n	0.00	0	11.0	0	3;19	n	0.12	1	7.5	1	5;10	n	0.29	2	5.0	2	1;9	n	0.00	0	13.5	0	7;20	n	0.24	2	6.5	2	1;12	n	0.10	1	9.0	1	2;16	n	ENSMUSG00000036291.7	Ap5m1	chr14	protein_coding	adaptor-related protein complex 5, mu 1 subunit
known_NIR_5515	chr14	49311199	49316152	+	49311651	49316152	A5SS	ENSMUST00000227431.2	known	0.00	0	24	0	24	n	0.00	0	8	0	8	n	0.06	1	16	1	16	n	0.17	2	10	2	10	y	0.00	0	19	0	19	n	0.00	0	4	0	4	n	0.00	0	19	0	19	n	0.09	1	10	1	10	n	0.18	2	9	2	9	y	0.00	0	20	0	20	n	0.14	2	12	2	12	y	0.06	1	16	1	16	n	ENSMUSG00000036291.7	Ap5m1	chr14	protein_coding	adaptor-related protein complex 5, mu 1 subunit
known_NIR_5516	chr14	49311651	49317693	+	49311651;49316379	49316152;49317693	ES	ENSMUST00000227431.2	known	0.08	2	22.0	2	24;20	y	0.00	0	11.5	0	8;15	n	0.00	0	21.0	0	16;26	n	0.00	0	15.0	0	10;20	n	0.00	0	22.5	0	19;26	n	0.10	1	9.5	1	4;15	n	0.00	0	22.0	0	19;25	n	0.00	0	19.0	0	10;28	n	0.08	1	11.5	1	9;14	n	0.00	0	25.0	0	20;30	n	0.00	0	17.0	0	12;22	n	0.05	1	21.0	1	16;26	n	ENSMUSG00000036291.7	Ap5m1	chr14	protein_coding	adaptor-related protein complex 5, mu 1 subunit
known_NIR_5517	chr14	49410850	49418163	+	49410850;49415632	49415509;49418163	ES	ENSMUST00000153488.9	known	0.03	1	32.0	1	26;38	n	0.00	0	28.5	0	17;40	n	0.00	0	63.5	0	49;78	n	0.10	4	37.5	4	29;46	y	0.00	0	59.5	0	41;78	n	0.00	0	33.5	0	31;36	n	0.00	0	43.5	0	34;53	n	0.00	0	39.5	0	40;39	n	0.00	0	27.5	0	24;31	n	0.00	0	46.0	0	35;57	n	0.00	0	28.5	0	22;35	n	0.00	0	37.5	0	29;46	n	ENSMUSG00000036282.16	Naa30	chr14	protein_coding	N(alpha)-acetyltransferase 30, NatC catalytic subunit
known_NIR_5518	chr14	49410850	49418163	+	49415632	49418163	A5SS&ES	ENSMUST00000037362.6	known	0.03	1	38	1	38	n	0.00	0	40	0	40	n	0.00	0	78	0	78	n	0.08	4	46	4	46	y	0.00	0	78	0	78	n	0.00	0	36	0	36	n	0.00	0	53	0	53	n	0.00	0	39	0	39	n	0.00	0	31	0	31	n	0.00	0	57	0	57	n	0.00	0	35	0	35	n	0.00	0	46	0	46	n	ENSMUSG00000036282.16	Naa30	chr14	protein_coding	N(alpha)-acetyltransferase 30, NatC catalytic subunit
known_NIR_5519	chr14	51004727	51009573	-	51004744	51009573	A3SS	ENSMUST00000006451.8	known	0.06	1	17	1	17	n	0.00	0	29	0	29	n	0.00	0	26	0	26	n	0.00	0	26	0	26	n	0.07	2	28	2	28	y	0.00	0	21	0	21	n	0.00	0	27	0	27	n	0.00	0	16	0	16	n	0.00	0	14	0	14	n	0.00	0	24	0	24	n	0.00	0	19	0	19	n	0.00	0	28	0	28	n	ENSMUSG00000006288.9	Ttc5	chr14	protein_coding	tetratricopeptide repeat domain 5
known_NIR_5520	chr14	51045444	51047463	+	51045444	51047531	A3SS	ENSMUST00000036126.7	known	0.12	1	7	1	7	n	0.14	1	6	1	6	n	0.12	1	7	1	7	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.30	3	7	3	7	y	0.14	1	6	1	6	n	0.13	2	13	2	13	y	ENSMUSG00000036023.7	Parp2	chr14	protein_coding	poly (ADP-ribose) polymerase family, member 2
known_NIR_5521	chr14	51052412	51052809	+	51052423	51052809	A5SS	ENSMUST00000036126.7	known	0.09	1	10	1	10	n	0.00	0	8	0	8	n	0.00	0	19	0	19	n	0.00	0	18	0	18	n	0.00	0	18	0	18	n	0.00	0	8	0	8	n	0.05	1	19	1	19	n	0.14	2	12	2	12	y	0.00	0	8	0	8	n	0.00	0	18	0	18	n	0.17	2	10	2	10	y	0.00	0	19	0	19	n	ENSMUSG00000036023.7	Parp2	chr14	protein_coding	poly (ADP-ribose) polymerase family, member 2
known_NIR_5522	chr14	51071024	51073449	-	51071024;51071534	51071371;51073449	ES	ENSMUST00000006444.9	known	0.11	2	16.0	2	17;15	y	0.00	0	13.0	0	15;11	n	0.05	1	18.5	1	18;19	n	0.00	0	18.0	0	17;19	n	0.00	0	18.0	0	19;17	n	0.00	0	10.0	0	8;12	n	0.00	0	28.5	0	25;32	n	0.00	0	10.5	0	10;11	n	0.00	0	16.0	0	14;18	n	0.00	0	22.0	0	28;16	n	0.00	0	15.0	0	18;12	n	0.00	0	19.5	0	22;17	n	ENSMUSG00000006281.9	Tep1	chr14	protein_coding	telomerase associated protein 1
known_NIR_5523	chr14	51108013	51109208	+	51108013	51114129	A3SS	ENSMUST00000181482.2	known	0.11	1	8	1	8	n	0.00	0	5	0	5	n	0.18	3	14	3	14	y	0.50	3	3	3	3	n	0.10	2	18	2	18	y	0.29	4	10	4	10	y	0.13	2	13	2	13	y	0.17	2	10	2	10	y	0.20	1	4	1	4	n	0.21	3	11	3	11	y	0.38	3	5	3	5	n	0.10	1	9	1	9	n	ENSMUSG00000097431.3	Gm26782	chr14	lncRNA	predicted gene, 26782
known_NIR_5524	chr14	51108013	51114129	+	51108013	51116087	A3SS	ENSMUST00000227103.2	known	0.89	8	1	8	1	n	1.00	5	0	5	0	n	1.00	14	0	14	0	n	1.00	3	0	3	0	n	1.00	18	0	18	0	n	1.00	10	0	10	0	n	0.87	13	2	13	2	y	0.83	10	2	10	2	y	0.44	4	5	4	5	n	1.00	11	0	11	0	n	0.83	5	1	5	1	n	1.00	9	0	9	0	n	ENSMUSG00000097431.3	Gm26782	chr14	lncRNA	predicted gene, 26782
known_NIR_5525	chr14	51108013	51114129	+	51108013	51117494	A3SS	ENSMUST00000227351.2	known	1.00	8	0	8	0	n	0.56	5	4	5	4	n	1.00	14	0	14	0	n	1.00	3	0	3	0	n	0.86	18	3	18	3	y	1.00	10	0	10	0	n	1.00	13	0	13	0	n	0.91	10	1	10	1	n	1.00	4	0	4	0	n	1.00	11	0	11	0	n	0.71	5	2	5	2	n	1.00	9	0	9	0	n	ENSMUSG00000097431.3	Gm26782	chr14	lncRNA	predicted gene, 26782
known_NIR_5526	chr14	51108013	51114129	+	51108013;51112419	51112371;51114129	ES	ENSMUST00000228078.2	known	1.00	8	0.0	8	0;0	n	0.83	5	1.0	5	0;2	n	0.74	14	5.0	14	5;5	y	0.86	3	0.5	3	1;0	n	0.78	18	5.0	18	2;8	y	0.87	10	1.5	10	2;1	n	1.00	13	0.0	13	0;0	n	0.83	10	2.0	10	4;0	n	0.80	4	1.0	4	0;2	n	0.76	11	3.5	11	4;3	y	0.83	5	1.0	5	0;2	n	0.95	9	0.5	9	0;1	n	ENSMUSG00000097431.3	Gm26782	chr14	lncRNA	predicted gene, 26782
known_NIR_5527	chr14	51157276	51157387	-	51157248	51157387	A3SS	ENSMUST00000160393.8	known	0.13	4	26	4	26	y	0.15	5	28	5	28	y	0.09	4	42	4	42	y	0.15	5	29	5	29	y	0.16	5	27	5	27	y	0.15	4	22	4	22	y	0.07	4	51	4	51	y	0.06	2	31	2	31	y	0.11	5	42	5	42	y	0.09	4	42	4	42	y	0.05	2	36	2	36	y	0.09	4	41	4	41	y	ENSMUSG00000006289.15	Osgep	chr14	protein_coding	O-sialoglycoprotein endopeptidase
known_NIR_5528	chr14	51162491	51162670	+	51162486	51162670	A5SS	ENSMUST00000049411.12	known	0.08	4	47	4	47	y	0.11	7	55	7	55	y	0.09	12	119	12	119	y	0.17	14	70	14	70	y	0.08	7	79	7	79	y	0.15	10	56	10	56	y	0.13	10	67	10	67	y	0.15	8	45	8	45	y	0.03	2	65	2	65	y	0.05	4	82	4	82	y	0.05	4	84	4	84	y	0.06	5	85	5	85	y	ENSMUSG00000035960.15	Apex1	chr14	protein_coding	apurinic/apyrimidinic endonuclease 1
known_NIR_5529	chr14	51166515	51166627	-	51166515	51166659	A5SS	ENSMUST00000160835.9	known	0.04	2	54	2	54	y	0.00	0	42	0	42	n	0.00	0	80	0	80	n	0.00	0	63	0	63	n	0.00	0	89	0	89	n	0.00	0	37	0	37	n	0.00	0	68	0	68	n	0.00	0	37	0	37	n	0.00	0	48	0	48	n	0.05	4	79	4	79	y	0.00	0	60	0	60	n	0.00	0	65	0	65	n	ENSMUSG00000035953.15	Pip4p1	chr14	protein_coding	phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1
known_NIR_5530	chr14	51166515	51167041	-	51166515;51166764	51166659;51167041	ES	ENSMUST00000160835.9	known	0.02	1	58.5	1	54;63	n	0.04	2	45.5	2	42;49	y	0.03	3	83.0	3	80;86	y	0.00	0	63.5	0	63;64	n	0.02	2	101.5	2	89;114	y	0.03	1	38.0	1	37;39	n	0.05	4	81.5	4	68;95	y	0.00	0	43.0	0	37;49	n	0.00	0	55.0	0	48;62	n	0.03	3	89.0	3	79;99	y	0.00	0	62.5	0	60;65	n	0.05	4	69.0	4	65;73	y	ENSMUSG00000035953.15	Pip4p1	chr14	protein_coding	phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1
known_NIR_5531	chr14	51166515	51167041	-	51166764	51167041	A3SS	ENSMUST00000160538.2	known	0.02	1	63	1	63	n	0.04	2	49	2	49	y	0.03	3	86	3	86	y	0.00	0	64	0	64	n	0.02	2	114	2	114	y	0.03	1	39	1	39	n	0.04	4	95	4	95	y	0.00	0	49	0	49	n	0.00	0	62	0	62	n	0.03	3	99	3	99	y	0.00	0	65	0	65	n	0.05	4	73	4	73	y	ENSMUSG00000035953.15	Pip4p1	chr14	protein_coding	phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1
known_NIR_5532	chr14	51166515;51166764	51166627;51167041	-	51166515	51167041	cassetteExon	ENSMUST00000162957.8	known	0.97	32.5	1	2;63	1	n	0.92	24.5	2	0;49	2	n	0.93	43.0	3	0;86	3	n	1.00	32.0	0	0;64	0	n	0.97	57.0	2	0;114	2	n	0.95	19.5	1	0;39	1	n	0.92	47.5	4	0;95	4	n	1.00	24.5	0	0;49	0	n	1.00	31.0	0	0;62	0	n	0.94	51.5	3	4;99	3	y	1.00	32.5	0	0;65	0	n	0.90	36.5	4	0;73	4	n	ENSMUSG00000035953.15	Pip4p1	chr14	protein_coding	phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1
known_NIR_5533	chr14	51167781	51168091	-	51167781	51168070	A5SS	ENSMUST00000160835.9	known	0.44	15	19	15	19	y	0.48	11	12	11	12	y	0.49	22	23	22	23	y	0.43	20	26	20	26	y	0.48	24	26	24	26	y	0.55	17	14	17	14	y	0.46	13	15	13	15	y	0.37	7	12	7	12	y	0.42	13	18	13	18	y	0.50	17	17	17	17	y	0.58	21	15	21	15	y	0.59	34	24	34	24	y	ENSMUSG00000035953.15	Pip4p1	chr14	protein_coding	phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1
known_NIR_5534	chr14	51182050	51187715	+	51182050	51185309	3pMXE	ENSMUST00000228712.2	known	0.00	0	318	0	318	n	0.00	0	345	0	345	n	0.00	0	1054	0	1054	n	0.00	1	359	1	359	n	0.00	0	584	0	584	n	0.00	0	548	0	548	n	0.00	1	475	1	475	n	0.00	2	437	2	437	y	0.00	1	277	1	277	n	0.00	0	404	0	404	n	0.00	0	315	0	315	n	0.00	0	382	0	382	n	ENSMUSG00000115338.3	Pnp	chr14	protein_coding	purine-nucleoside phosphorylase
known_NIR_5535	chr14	51182050	51187715	+	51182050;51185478	51185309;51187715	ES	ENSMUST00000226871.2	known	0.00	0	353.5	0	318;389	n	0.00	0	352.5	0	345;360	n	0.00	0	1107.0	0	1054;1160	n	0.00	1	393.5	1	359;428	n	0.00	0	585.0	0	584;586	n	0.00	0	545.0	0	548;542	n	0.00	1	513.5	1	475;552	n	0.00	2	443.0	2	437;449	y	0.00	1	270.0	1	277;263	n	0.00	0	416.5	0	404;429	n	0.00	0	329.5	0	315;344	n	0.00	0	395.0	0	382;408	n	ENSMUSG00000115338.3	Pnp	chr14	protein_coding	purine-nucleoside phosphorylase
known_NIR_5536	chr14	51328710	51338843	+	51328710	51342264	A3SS	ENSMUST00000022428.13	known	0.24	254	813	254	813	y	0.33	429	867	429	867	y	0.43	726	976	726	976	y	0.27	321	859	321	859	y	0.31	554	1238	554	1238	y	0.37	436	753	436	753	y	0.31	452	995	452	995	y	0.40	472	718	472	718	y	0.31	301	681	301	681	y	0.26	332	952	332	952	y	0.30	225	535	225	535	y	0.26	292	829	292	829	y	ENSMUSG00000021876.16	Rnase4	chr14	protein_coding	ribonuclease, RNase A family 4
known_NIR_5537	chr14	51333930	51338843	+	51328710	51338843	A5SS	ENSMUST00000171688.9	known	0.94	3841	254	3841	254	y	0.90	3891	429	3891	429	y	0.71	1806	726	1806	726	y	0.92	3729	321	3729	321	y	0.91	5496	554	5496	554	y	0.81	1856	436	1856	436	y	0.89	3665	452	3665	452	y	0.82	2190	472	2190	472	y	0.91	2990	301	2990	301	y	0.92	4007	332	4007	332	y	0.93	3034	225	3034	225	y	0.92	3569	292	3569	292	y	ENSMUSG00000072115.12	Ang	chr14	protein_coding	angiogenin, ribonuclease, RNase A family, 5
known_NIR_5538	chr14	51333930	51338843	+	51333930	51342264	A3SS	ENSMUST00000169895.3	known	0.36	3841	6804	3841	6804	y	0.41	3891	5567	3891	5567	y	0.44	1806	2305	1806	2305	y	0.33	3729	7474	3729	7474	y	0.37	5496	9480	5496	9480	y	0.44	1856	2330	1856	2330	y	0.32	3665	7796	3665	7796	y	0.41	2190	3097	2190	3097	y	0.34	2990	5836	2990	5836	y	0.34	4007	7739	4007	7739	y	0.36	3034	5323	3034	5323	y	0.30	3569	8340	3569	8340	y	ENSMUSG00000021876.16	Rnase4	chr14	protein_coding	ribonuclease, RNase A family 4
known_NIR_5539	chr14	51333930	51342264	+	51328710	51342264	A5SS	ENSMUST00000022428.13	known	0.89	6804	813	6804	813	y	0.87	5567	867	5567	867	y	0.70	2305	976	2305	976	y	0.90	7474	859	7474	859	y	0.88	9480	1238	9480	1238	y	0.76	2330	753	2330	753	y	0.89	7796	995	7796	995	y	0.81	3097	718	3097	718	y	0.90	5836	681	5836	681	y	0.89	7739	952	7739	952	y	0.91	5323	535	5323	535	y	0.91	8340	829	8340	829	y	ENSMUSG00000021876.16	Rnase4	chr14	protein_coding	ribonuclease, RNase A family 4
known_NIR_5540	chr14	52122761	52122861	+	52122761	52122845	A3SS	ENSMUST00000047899.13	known	0.00	0	44	0	44	n	0.00	0	26	0	26	n	0.20	3	12	3	12	y	0.00	0	37	0	37	n	0.05	3	52	3	52	y	0.00	0	8	0	8	n	0.06	2	29	2	29	y	0.00	0	25	0	25	n	0.00	0	37	0	37	n	0.03	1	39	1	39	n	0.00	0	26	0	26	n	0.24	6	19	6	19	y	ENSMUSG00000004561.15	Mettl17	chr14	protein_coding	methyltransferase like 17
known_NIR_5541	chr14	52126293	52126985	+	52126293	52126604	3pMXE	ENSMUST00000169019.8	known	0.00	0	33	0	33	n	0.03	1	34	1	34	n	0.12	2	15	2	15	y	0.00	0	30	0	30	n	0.04	1	26	1	26	n	0.00	0	16	0	16	n	0.09	1	10	1	10	n	0.00	0	10	0	10	n	0.10	2	18	2	18	y	0.05	2	38	2	38	y	0.10	2	18	2	18	y	0.08	3	34	3	34	y	ENSMUSG00000004561.15	Mettl17	chr14	protein_coding	methyltransferase like 17
known_NIR_5542	chr14	52126293	52126985	+	52126293;52126674	52126604;52126985	ES	ENSMUST00000047899.13	known	0.00	0	31.0	0	33;29	n	0.03	1	32.0	1	34;30	n	0.15	2	11.5	2	15;8	y	0.00	0	30.5	0	30;31	n	0.04	1	23.0	1	26;20	n	0.00	0	15.0	0	16;14	n	0.07	1	14.0	1	10;18	n	0.00	0	9.0	0	10;8	n	0.11	2	15.5	2	18;13	y	0.05	2	39.0	2	38;40	y	0.10	2	18.5	2	18;19	y	0.08	3	32.5	3	34;31	y	ENSMUSG00000004561.15	Mettl17	chr14	protein_coding	methyltransferase like 17
known_NIR_5543	chr14	52126293	52126985	+	52126293;52126854	52126604;52126985	ES	ENSMUST00000168413.8	known	0.00	0	22.0	0	33;11	n	0.05	1	21.0	1	34;8	n	0.17	2	9.5	2	15;4	y	0.00	0	19.0	0	30;8	n	0.05	1	17.5	1	26;9	n	0.00	0	11.0	0	16;6	n	0.13	1	6.5	1	10;3	n	0.00	0	6.0	0	10;2	n	0.17	2	10.0	2	18;2	y	0.08	2	22.5	2	38;7	y	0.15	2	11.5	2	18;5	y	0.13	3	19.5	3	34;5	y	ENSMUSG00000004561.15	Mettl17	chr14	protein_coding	methyltransferase like 17
known_NIR_5544	chr14	52126854	52126985	+	52126674	52126985	A5SS	ENSMUST00000047899.13	known	0.28	11	29	11	29	y	0.21	8	30	8	30	y	0.33	4	8	4	8	y	0.21	8	31	8	31	y	0.31	9	20	9	20	y	0.30	6	14	6	14	y	0.14	3	18	3	18	y	0.20	2	8	2	8	y	0.13	2	13	2	13	y	0.15	7	40	7	40	y	0.21	5	19	5	19	y	0.14	5	31	5	31	y	ENSMUSG00000004561.15	Mettl17	chr14	protein_coding	methyltransferase like 17
known_NIR_5545	chr14	52129004	52129084	+	52129008	52129084	A5SS	ENSMUST00000047899.13	known	0.00	0	45	0	45	n	0.04	2	46	2	46	y	0.05	2	38	2	38	y	0.00	0	34	0	34	n	0.02	1	57	1	57	n	0.00	0	15	0	15	n	0.02	1	56	1	56	n	0.00	0	26	0	26	n	0.00	0	30	0	30	n	0.04	2	50	2	50	y	0.06	3	49	3	49	y	0.02	1	42	1	42	n	ENSMUSG00000004561.15	Mettl17	chr14	protein_coding	methyltransferase like 17
known_NIR_5546	chr14	52148242	52148923	-	52148242;52148584	52148543;52148923	ES	ENSMUST00000004673.15	known	0.05	88	1741.5	88	1794;1689	y	0.06	82	1207.5	82	1265;1150	y	0.16	79	405.5	79	421;390	y	0.05	137	2521.5	137	2622;2421	y	0.08	183	2213.5	183	2234;2193	y	0.23	108	365.0	108	379;351	y	0.05	114	2362.5	114	2492;2233	y	0.14	98	603.0	98	618;588	y	0.03	60	1799.5	60	1889;1710	y	0.04	116	2894.0	116	3017;2771	y	0.02	45	1875.0	45	1984;1766	y	0.03	78	2426.5	78	2564;2289	y	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
known_NIR_5547	chr14	52149003	52149412	-	52149003	52150780	A5SS	ENSMUST00000004673.15	known	0.08	37	405	37	405	y	0.09	25	253	25	253	y	0.02	3	171	3	171	y	0.10	61	577	61	577	y	0.05	36	670	36	670	y	0.01	2	183	2	183	y	0.05	32	559	32	559	y	0.02	4	241	4	241	y	0.08	31	372	31	372	y	0.06	39	591	39	591	y	0.08	36	404	36	404	y	0.08	41	500	41	500	y	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
known_NIR_5548	chr14	52149003	52149412	-	52149003	52150933	A5SS	ENSMUST00000228164.2	known	1.00	37	0	37	0	n	0.86	25	4	25	4	y	1.00	3	0	3	0	n	0.80	61	15	61	15	y	0.75	36	12	36	12	y	1.00	2	0	2	0	n	1.00	32	0	32	0	n	1.00	4	0	4	0	n	1.00	31	0	31	0	n	1.00	39	0	39	0	n	1.00	36	0	36	0	n	0.82	41	9	41	9	y	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
known_NIR_5549	chr14	52149003	52149412	-	52149003	52151381	A5SS	ENSMUST00000227237.2	known	0.12	37	278	37	278	y	0.14	25	150	25	150	y	0.33	3	6	3	6	n	0.13	61	408	61	408	y	0.11	36	290	36	290	y	0.17	2	10	2	10	y	0.08	32	392	32	392	y	0.14	4	24	4	24	y	0.10	31	267	31	267	y	0.07	39	514	39	514	y	0.13	36	234	36	234	y	0.13	41	272	41	272	y	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
known_NIR_5550	chr14	52149003	52150051	-	52149003	52149412	5pMXE	ENSMUST00000226528.2	known	0.40	25	37	25	37	y	0.43	19	25	19	25	y	0.57	4	3	4	3	n	0.38	38	61	38	61	y	0.57	48	36	48	36	y	0.60	3	2	3	2	n	0.45	26	32	26	32	y	0.56	5	4	5	4	n	0.40	21	31	21	31	y	0.57	52	39	52	39	y	0.45	29	36	29	36	y	0.46	35	41	35	41	y	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
known_NIR_5551	chr14	52149003	52150051	-	52149003	52150780	A5SS	ENSMUST00000004673.15	known	0.06	25	405	25	405	y	0.07	19	253	19	253	y	0.02	4	171	4	171	y	0.06	38	577	38	577	y	0.07	48	670	48	670	y	0.02	3	183	3	183	y	0.04	26	559	26	559	y	0.02	5	241	5	241	y	0.05	21	372	21	372	y	0.08	52	591	52	591	y	0.07	29	404	29	404	y	0.07	35	500	35	500	y	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
known_NIR_5552	chr14	52149003	52150051	-	52149003	52150933	A5SS	ENSMUST00000228164.2	known	1.00	25	0	25	0	n	0.83	19	4	19	4	y	1.00	4	0	4	0	n	0.72	38	15	38	15	y	0.80	48	12	48	12	y	1.00	3	0	3	0	n	1.00	26	0	26	0	n	1.00	5	0	5	0	n	1.00	21	0	21	0	n	1.00	52	0	52	0	n	1.00	29	0	29	0	n	0.80	35	9	35	9	y	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
known_NIR_5553	chr14	52149003	52150051	-	52149003	52151381	A5SS	ENSMUST00000227237.2	known	0.08	25	278	25	278	y	0.11	19	150	19	150	y	0.40	4	6	4	6	y	0.09	38	408	38	408	y	0.14	48	290	48	290	y	0.23	3	10	3	10	y	0.06	26	392	26	392	y	0.17	5	24	5	24	y	0.07	21	267	21	267	y	0.09	52	514	52	514	y	0.11	29	234	29	234	y	0.11	35	272	35	272	y	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
known_NIR_5554	chr14	52149003	52150933	-	52149003	52150780	5pMXE	ENSMUST00000004673.15	known	0.00	0	405	0	405	n	0.02	4	253	4	253	y	0.00	0	171	0	171	n	0.03	15	577	15	577	y	0.02	12	670	12	670	y	0.00	0	183	0	183	n	0.00	0	559	0	559	n	0.00	0	241	0	241	n	0.00	0	372	0	372	n	0.00	0	591	0	591	n	0.00	0	404	0	404	n	0.02	9	500	9	500	y	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
known_NIR_5555	chr14	52149003	52150933	-	52149003	52151381	A5SS	ENSMUST00000227237.2	known	0.00	0	278	0	278	n	0.03	4	150	4	150	y	0.00	0	6	0	6	n	0.04	15	408	15	408	y	0.04	12	290	12	290	y	0.00	0	10	0	10	n	0.00	0	392	0	392	n	0.00	0	24	0	24	n	0.00	0	267	0	267	n	0.00	0	514	0	514	n	0.00	0	234	0	234	n	0.03	9	272	9	272	y	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
known_NIR_5556	chr14	52149003	52151381	-	52149003	52150780	5pMXE	ENSMUST00000004673.15	known	0.41	278	405	278	405	y	0.37	150	253	150	253	y	0.03	6	171	6	171	y	0.41	408	577	408	577	y	0.30	290	670	290	670	y	0.05	10	183	10	183	y	0.41	392	559	392	559	y	0.09	24	241	24	241	y	0.42	267	372	267	372	y	0.47	514	591	514	591	y	0.37	234	404	234	404	y	0.35	272	500	272	500	y	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
known_NIR_5557	chr14	52241215	52242069	+	52241215	52241430	A3SS&ES	ENSMUST00000182667.8	known	0.00	0	12	0	12	n	0.00	0	17	0	17	n	0.00	0	6	0	6	n	0.17	1	5	1	5	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.11	3	25	3	25	y	0.00	0	13	0	13	n	0.08	1	12	1	12	n	0.13	3	20	3	20	y	0.20	2	8	2	8	y	0.00	0	12	0	12	n	ENSMUSG00000004562.17	Arhgef40	chr14	protein_coding	Rho guanine nucleotide exchange factor (GEF) 40
known_NIR_5558	chr14	52241215	52242069	+	52241215;52241573	52241430;52242069	ES	ENSMUST00000093813.12	known	0.00	0	13.0	0	12;14	n	0.00	0	17.0	0	17;17	n	0.00	0	8.5	0	6;11	n	0.07	1	14.0	1	5;23	n	0.00	0	13.0	0	11;15	n	0.00	0	6.0	0	4;8	n	0.13	3	19.5	3	25;14	y	0.00	0	11.0	0	13;9	n	0.07	1	13.0	1	12;14	n	0.11	3	23.5	3	20;27	y	0.24	2	6.5	2	8;5	y	0.00	0	17.0	0	12;22	n	ENSMUSG00000004562.17	Arhgef40	chr14	protein_coding	Rho guanine nucleotide exchange factor (GEF) 40
known_NIR_5559	chr14	52241215	52242069	+	52241573	52242069	A5SS	ENSMUST00000182931.2	known	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.00	0	11	0	11	n	0.04	1	23	1	23	n	0.00	0	15	0	15	n	0.00	0	8	0	8	n	0.18	3	14	3	14	y	0.00	0	9	0	9	n	0.07	1	14	1	14	n	0.10	3	27	3	27	y	0.29	2	5	2	5	n	0.00	0	22	0	22	n	ENSMUSG00000004562.17	Arhgef40	chr14	protein_coding	Rho guanine nucleotide exchange factor (GEF) 40
known_NIR_5560	chr14	52241573	52242057	+	52241573	52242069	A3SS	ENSMUST00000182905.8	known	0.00	0	14	0	14	n	0.06	1	17	1	17	n	0.00	0	11	0	11	n	0.00	0	23	0	23	n	0.00	0	15	0	15	n	0.27	3	8	3	8	y	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	27	0	27	n	0.00	0	5	0	5	n	0.00	0	22	0	22	n	ENSMUSG00000004562.17	Arhgef40	chr14	protein_coding	Rho guanine nucleotide exchange factor (GEF) 40
known_NIR_5561	chr14	52242199	52242446	+	52242199	52242336	A3SS	ENSMUST00000182644.8	known	0.76	13	4	13	4	y	0.80	16	4	16	4	y	0.92	11	1	11	1	n	0.87	20	3	20	3	y	0.84	21	4	21	4	y	1.00	5	0	5	0	n	0.77	10	3	10	3	y	0.90	9	1	9	1	n	0.83	5	1	5	1	n	0.91	21	2	21	2	y	0.91	10	1	10	1	n	0.87	13	2	13	2	y	ENSMUSG00000004562.17	Arhgef40	chr14	protein_coding	Rho guanine nucleotide exchange factor (GEF) 40
known_NIR_5562	chr14	52242199	52242446	+	52242199;52242356	52242336;52242446	ES	ENSMUST00000182905.8	known	0.81	13	3.0	13	4;2	y	0.82	16	3.5	16	4;3	y	0.96	11	0.5	11	1;0	n	0.87	20	3.0	20	3;3	y	0.86	21	3.5	21	4;3	y	1.00	5	0.0	5	0;0	n	0.83	10	2.0	10	3;1	n	0.90	9	1.0	9	1;1	n	0.83	5	1.0	5	1;1	n	0.95	21	1.0	21	2;0	n	0.87	10	1.5	10	1;2	n	0.93	13	1.0	13	2;0	n	ENSMUSG00000004562.17	Arhgef40	chr14	protein_coding	Rho guanine nucleotide exchange factor (GEF) 40
known_NIR_5563	chr14	52242492	52242798	+	52242492	52242616	A3SS	ENSMUST00000182905.8	known	0.60	12	8	12	8	y	0.75	21	7	21	7	y	0.45	5	6	5	6	y	0.55	11	9	11	9	y	0.79	22	6	22	6	y	0.50	3	3	3	3	n	0.59	13	9	13	9	y	0.75	3	1	3	1	n	0.86	12	2	12	2	y	0.43	10	13	10	13	y	0.38	5	8	5	8	y	0.44	4	5	4	5	n	ENSMUSG00000004562.17	Arhgef40	chr14	protein_coding	Rho guanine nucleotide exchange factor (GEF) 40
known_NIR_5564	chr14	52247119;52247515	52247427;52257980	-	52247119	52257980	cassetteExon	ENSMUST00000228580.2	known	0.85	17.0	3	16;18	3	y	0.33	4.0	8	5;3	8	y	0.62	10.0	6	15;5	6	y	0.65	17.0	9	20;14	9	y	0.37	11.5	20	14;9	20	y	0.56	9.0	7	10;8	7	y	0.49	10.5	11	17;4	11	y	0.35	7.0	13	11;3	13	y	0.45	10.0	12	14;6	12	y	0.81	26.0	6	30;22	6	y	0.51	11.5	11	17;6	11	y	0.35	8.0	15	12;4	15	y	ENSMUSG00000049295.18	Zfp219	chr14	protein_coding	zinc finger protein 219
known_NIR_5565	chr14	52247515	52252405	-	52247515	52257980	A5SS	ENSMUST00000067549.15	known	0.14	3	18	3	18	y	0.25	1	3	1	3	n	0.38	3	5	3	5	n	0.22	4	14	4	14	y	0.18	2	9	2	9	y	0.00	0	8	0	8	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.45	5	6	5	6	y	0.24	7	22	7	22	y	0.14	1	6	1	6	n	0.56	5	4	5	4	n	ENSMUSG00000049295.18	Zfp219	chr14	protein_coding	zinc finger protein 219
known_NIR_5566	chr14	52247515;52257831	52257648;52257980	-	52247515	52257980	cassetteExon	ENSMUST00000067549.15	known	0.10	2.0	18	0;4	18	n	0.33	1.5	3	0;3	3	n	0.17	1.0	5	1;1	5	n	0.12	2.0	14	1;3	14	n	0.31	4.0	9	2;6	9	y	0.00	0.0	8	0;0	8	n	0.11	0.5	4	0;1	4	n	0.25	1.0	3	0;2	3	n	0.25	2.0	6	0;4	6	n	0.15	4.0	22	2;6	22	y	0.25	2.0	6	1;3	6	n	0.27	1.5	4	0;3	4	n	ENSMUSG00000049295.18	Zfp219	chr14	protein_coding	zinc finger protein 219
known_NIR_5567	chr14	52257831	52257980	-	52247119	52257980	A3SS	ENSMUST00000228580.2	known	0.57	4	3	4	3	n	0.27	3	8	3	8	y	0.14	1	6	1	6	n	0.25	3	9	3	9	y	0.23	6	20	6	20	y	0.00	0	7	0	7	n	0.08	1	11	1	11	n	0.13	2	13	2	13	y	0.25	4	12	4	12	y	0.50	6	6	6	6	y	0.21	3	11	3	11	y	0.17	3	15	3	15	y	ENSMUSG00000049295.18	Zfp219	chr14	protein_coding	zinc finger protein 219
known_NIR_5568	chr14	52312869	52313070	-	52312872	52313070	A3SS	ENSMUST00000228198.2	known	0.27	42	115	42	115	y	0.21	35	130	35	130	y	0.31	33	72	33	72	y	0.31	53	119	53	119	y	0.33	57	116	57	116	y	0.25	15	46	15	46	y	0.26	67	188	67	188	y	0.11	9	76	9	76	y	0.26	37	108	37	108	y	0.33	54	111	54	111	y	0.27	45	124	45	124	y	0.29	50	121	50	121	y	ENSMUSG00000060373.16	Hnrnpc	chr14	protein_coding	heterogeneous nuclear ribonucleoprotein C
known_NIR_5569	chr14	52312869	52313070	-	52312893	52313070	A3SS	ENSMUST00000111610.12	known	0.16	42	221	42	221	y	0.17	35	174	35	174	y	0.19	33	137	33	137	y	0.23	53	181	53	181	y	0.21	57	215	57	215	y	0.16	15	77	15	77	y	0.21	67	255	67	255	y	0.07	9	113	9	113	y	0.16	37	192	37	192	y	0.19	54	224	54	224	y	0.17	45	219	45	219	y	0.19	50	220	50	220	y	ENSMUSG00000060373.16	Hnrnpc	chr14	protein_coding	heterogeneous nuclear ribonucleoprotein C
known_NIR_5570	chr14	52312872	52313070	-	52312893	52313070	A3SS	ENSMUST00000111610.12	known	0.34	115	221	115	221	y	0.43	130	174	130	174	y	0.34	72	137	72	137	y	0.40	119	181	119	181	y	0.35	116	215	116	215	y	0.37	46	77	46	77	y	0.42	188	255	188	255	y	0.40	76	113	76	113	y	0.36	108	192	108	192	y	0.33	111	224	111	224	y	0.36	124	219	124	219	y	0.35	121	220	121	220	y	ENSMUSG00000060373.16	Hnrnpc	chr14	protein_coding	heterogeneous nuclear ribonucleoprotein C
known_NIR_5571	chr14	52318764	52319285	-	52318764	52319246	A5SS	ENSMUST00000111610.12	known	0.82	275	62	275	62	y	0.83	185	38	185	38	y	0.77	198	59	198	59	y	0.86	296	50	296	50	y	0.81	301	70	301	70	y	0.79	114	31	114	31	y	0.83	337	70	337	70	y	0.81	157	36	157	36	y	0.80	208	53	208	53	y	0.80	280	71	280	71	y	0.75	211	70	211	70	y	0.82	275	60	275	60	y	ENSMUSG00000060373.16	Hnrnpc	chr14	protein_coding	heterogeneous nuclear ribonucleoprotein C
known_NIR_5572	chr14	52321848	52334772	-	52321848	52334779	A5SS	ENSMUST00000228232.2	known	0.00	0	19	0	19	n	0.00	0	19	0	19	n	0.00	0	25	0	25	n	0.00	0	8	0	8	n	0.17	4	20	4	20	y	0.00	0	15	0	15	n	0.12	3	21	3	21	y	0.00	0	14	0	14	n	0.22	4	14	4	14	y	0.14	3	19	3	19	y	0.00	0	14	0	14	n	0.04	1	23	1	23	n	ENSMUSG00000060373.16	Hnrnpc	chr14	protein_coding	heterogeneous nuclear ribonucleoprotein C
known_NIR_5573	chr14	52321848	52334772	-	52321848	52335472	A5SS	ENSMUST00000111610.12	known	0.00	0	209	0	209	n	0.00	0	178	0	178	n	0.00	0	146	0	146	n	0.00	0	277	0	277	n	0.01	4	283	4	283	y	0.00	0	92	0	92	n	0.01	3	265	3	265	y	0.00	0	126	0	126	n	0.02	4	177	4	177	y	0.01	3	210	3	210	y	0.00	0	205	0	205	n	0.00	1	213	1	213	n	ENSMUSG00000060373.16	Hnrnpc	chr14	protein_coding	heterogeneous nuclear ribonucleoprotein C
known_NIR_5574	chr14	52321848	52334772	-	52321848	52341346	A5SS	ENSMUST00000227536.2	known	0.00	0	45	0	45	n	0.00	0	28	0	28	n	0.00	0	60	0	60	n	0.00	0	70	0	70	n	0.06	4	60	4	60	y	0.00	0	34	0	34	n	0.03	3	85	3	85	y	0.00	0	48	0	48	n	0.09	4	41	4	41	y	0.05	3	53	3	53	y	0.00	0	55	0	55	n	0.02	1	64	1	64	n	ENSMUSG00000060373.16	Hnrnpc	chr14	protein_coding	heterogeneous nuclear ribonucleoprotein C
known_NIR_5575	chr14	52321848	52334779	-	52321848	52335472	A5SS	ENSMUST00000111610.12	known	0.08	19	209	19	209	y	0.10	19	178	19	178	y	0.15	25	146	25	146	y	0.03	8	277	8	277	y	0.07	20	283	20	283	y	0.14	15	92	15	92	y	0.07	21	265	21	265	y	0.10	14	126	14	126	y	0.07	14	177	14	177	y	0.08	19	210	19	210	y	0.06	14	205	14	205	y	0.10	23	213	23	213	y	ENSMUSG00000060373.16	Hnrnpc	chr14	protein_coding	heterogeneous nuclear ribonucleoprotein C
known_NIR_5576	chr14	52321848	52334779	-	52321848	52341346	A5SS	ENSMUST00000227536.2	known	0.30	19	45	19	45	y	0.40	19	28	19	28	y	0.29	25	60	25	60	y	0.10	8	70	8	70	y	0.25	20	60	20	60	y	0.31	15	34	15	34	y	0.20	21	85	21	85	y	0.23	14	48	14	48	y	0.25	14	41	14	41	y	0.26	19	53	19	53	y	0.20	14	55	14	55	y	0.26	23	64	23	64	y	ENSMUSG00000060373.16	Hnrnpc	chr14	protein_coding	heterogeneous nuclear ribonucleoprotein C
known_NIR_5577	chr14	52321848	52341346	-	52321848;52335497	52335472;52341346	ES	ENSMUST00000111610.12	known	0.18	45	199.5	45	209;190	y	0.14	28	171.0	28	178;164	y	0.31	60	133.5	60	146;121	y	0.21	70	265.5	70	277;254	y	0.18	60	272.5	60	283;262	y	0.26	34	95.0	34	92;98	y	0.25	85	259.5	85	265;254	y	0.28	48	124.5	48	126;123	y	0.19	41	175.0	41	177;173	y	0.20	53	206.5	53	210;203	y	0.21	55	201.0	55	205;197	y	0.24	64	208.0	64	213;203	y	ENSMUSG00000060373.16	Hnrnpc	chr14	protein_coding	heterogeneous nuclear ribonucleoprotein C
known_NIR_5578	chr14	52321848	52341346	-	52321848;52336001	52334779;52341346	ES	ENSMUST00000228232.2	known	0.69	45	20.5	45	19;22	y	0.54	28	24.0	28	19;29	y	0.68	60	28.0	60	25;31	y	0.84	70	13.0	70	8;18	y	0.75	60	20.5	60	20;21	y	0.74	34	12.0	34	15;9	y	0.74	85	29.5	85	21;38	y	0.76	48	15.5	48	14;17	y	0.77	41	12.5	41	14;11	y	0.69	53	24.0	53	19;29	y	0.74	55	19.0	55	14;24	y	0.76	64	20.5	64	23;18	y	ENSMUSG00000060373.16	Hnrnpc	chr14	protein_coding	heterogeneous nuclear ribonucleoprotein C
known_NIR_5579	chr14	52321848	52341346	-	52321848;52336001	52335472;52341346	ES	ENSMUST00000228815.2	known	0.28	45	115.5	45	209;22	y	0.21	28	103.5	28	178;29	y	0.40	60	88.5	60	146;31	y	0.32	70	147.5	70	277;18	y	0.28	60	152.0	60	283;21	y	0.40	34	50.5	34	92;9	y	0.36	85	151.5	85	265;38	y	0.40	48	71.5	48	126;17	y	0.30	41	94.0	41	177;11	y	0.31	53	119.5	53	210;29	y	0.32	55	114.5	55	205;24	y	0.36	64	115.5	64	213;18	y	ENSMUSG00000060373.16	Hnrnpc	chr14	protein_coding	heterogeneous nuclear ribonucleoprotein C
known_NIR_5580	chr14	52321848	52341346	-	52335497	52341346	3pMXE	ENSMUST00000228786.2	known	0.19	45	190	45	190	y	0.15	28	164	28	164	y	0.33	60	121	60	121	y	0.22	70	254	70	254	y	0.19	60	262	60	262	y	0.26	34	98	34	98	y	0.25	85	254	85	254	y	0.28	48	123	48	123	y	0.19	41	173	41	173	y	0.21	53	203	53	203	y	0.22	55	197	55	197	y	0.24	64	203	64	203	y	ENSMUSG00000060373.16	Hnrnpc	chr14	protein_coding	heterogeneous nuclear ribonucleoprotein C
known_NIR_5581	chr14	52335497	52341346	-	52336001	52341346	A3SS	ENSMUST00000228232.2	known	0.90	190	22	190	22	y	0.85	164	29	164	29	y	0.80	121	31	121	31	y	0.93	254	18	254	18	y	0.93	262	21	262	21	y	0.92	98	9	98	9	y	0.87	254	38	254	38	y	0.88	123	17	123	17	y	0.94	173	11	173	11	y	0.88	203	29	203	29	y	0.89	197	24	197	24	y	0.92	203	18	203	18	y	ENSMUSG00000060373.16	Hnrnpc	chr14	protein_coding	heterogeneous nuclear ribonucleoprotein C
known_NIR_5582	chr14	52335497;52336001	52335773;52341346	-	52335497	52341346	cassetteExon	ENSMUST00000111610.12	known	0.07	14.0	190	6;22	190	y	0.10	18.5	164	8;29	164	y	0.14	19.5	121	8;31	121	y	0.05	12.5	254	7;18	254	y	0.06	17.0	262	13;21	262	y	0.04	4.5	98	0;9	98	n	0.08	23.0	254	8;38	254	y	0.09	11.5	123	6;17	123	y	0.06	10.5	173	10;11	173	y	0.09	19.0	203	9;29	203	y	0.08	16.5	197	9;24	197	y	0.06	12.5	203	7;18	203	y	ENSMUSG00000060373.16	Hnrnpc	chr14	protein_coding	heterogeneous nuclear ribonucleoprotein C
known_NIR_5583	chr14	52336001	52341346	-	52321848	52341346	A3SS	ENSMUST00000227536.2	known	0.33	22	45	22	45	y	0.51	29	28	29	28	y	0.34	31	60	31	60	y	0.20	18	70	18	70	y	0.26	21	60	21	60	y	0.21	9	34	9	34	y	0.31	38	85	38	85	y	0.26	17	48	17	48	y	0.21	11	41	11	41	y	0.35	29	53	29	53	y	0.30	24	55	24	55	y	0.22	18	64	18	64	y	ENSMUSG00000060373.16	Hnrnpc	chr14	protein_coding	heterogeneous nuclear ribonucleoprotein C
known_NIR_5584	chr14	52439204	52439961	-	52439204;52439780	52439601;52439961	ES	ENSMUST00000089752.11	known	0.02	1	51.0	1	51;51	n	0.00	0	58.5	0	69;48	n	0.03	2	58.0	2	56;60	y	0.00	0	42.5	0	39;46	n	0.00	0	63.5	0	65;62	n	0.00	0	34.0	0	36;32	n	0.00	0	52.5	0	52;53	n	0.00	0	35.5	0	38;33	n	0.00	0	33.5	0	39;28	n	0.00	0	61.0	0	53;69	n	0.00	0	50.5	0	57;44	n	0.02	1	46.0	1	46;46	n	ENSMUSG00000053754.15	Chd8	chr14	protein_coding	chromodomain helicase DNA binding protein 8
known_NIR_5585	chr14	52450200	52450281	-	52450176	52450281	A3SS	ENSMUST00000089752.11	known	0.29	7	17	7	17	y	0.44	4	5	4	5	n	0.23	7	23	7	23	y	0.35	6	11	6	11	y	0.21	8	31	8	31	y	0.16	3	16	3	16	y	0.29	7	17	7	17	y	0.33	7	14	7	14	y	0.19	3	13	3	13	y	0.25	5	15	5	15	y	0.25	3	9	3	9	y	0.19	3	13	3	13	y	ENSMUSG00000053754.15	Chd8	chr14	protein_coding	chromodomain helicase DNA binding protein 8
known_NIR_5586	chr14	52460076;52462007	52461977;52462083	-	52460076	52462083	cassetteExon	ENSMUST00000089752.11	known	0.00	0.0	8	0;0	8	n	0.20	1.0	4	1;1	4	n	0.00	0.0	16	0;0	16	n	0.00	0.0	14	0;0	14	n	0.00	0.0	17	0;0	17	n	0.00	0.0	9	0;0	9	n	0.00	0.0	16	0;0	16	n	0.00	0.0	12	0;0	12	n	0.00	0.0	12	0;0	12	n	0.00	0.0	19	0;0	19	n	0.25	2.0	6	2;2	6	y	0.00	0.0	15	0;0	15	n	ENSMUSG00000053754.15	Chd8	chr14	protein_coding	chromodomain helicase DNA binding protein 8
known_NIR_5587	chr14	52535542	52537158	-	52535542;52536272	52536097;52537158	ES	ENSMUST00000022767.16	known	0.00	0	15.0	0	16;14	n	0.16	4	21.5	4	24;19	y	0.42	14	19.5	14	14;25	y	0.00	0	20.5	0	19;22	n	0.19	6	26.0	6	32;20	y	0.28	5	13.0	5	11;15	y	0.14	5	31.0	5	29;33	y	0.09	2	19.5	2	12;27	y	0.29	8	20.0	8	20;20	y	0.09	2	20.0	2	18;22	y	0.30	8	18.5	8	15;22	y	0.07	2	28.0	2	30;26	y	ENSMUSG00000022160.19	Mettl3	chr14	protein_coding	methyltransferase like 3
known_NIR_5588	chr14	52537858	52542340	-	52537858	52542345	A5SS	ENSMUST00000022767.16	known	0.05	1	19	1	19	n	0.00	0	14	0	14	n	0.08	2	24	2	24	y	0.10	2	19	2	19	y	0.08	2	24	2	24	y	0.00	0	7	0	7	n	0.09	1	10	1	10	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.06	1	17	1	17	n	0.00	0	23	0	23	n	ENSMUSG00000022160.19	Mettl3	chr14	protein_coding	methyltransferase like 3
known_NIR_5589	chr14	54496776	54499083	+	54491928	54499083	A5SS	ENSMUST00000180359.8	known	0.83	19	4	19	4	y	0.79	22	6	22	6	y	0.76	28	9	28	9	y	0.45	19	23	19	23	y	0.77	40	12	40	12	y	0.68	17	8	17	8	y	0.38	11	18	11	18	y	0.38	9	15	9	15	y	0.83	20	4	20	4	y	0.63	22	13	22	13	y	0.72	21	8	21	8	y	0.71	24	10	24	10	y	ENSMUSG00000040997.15	Abhd4	chr14	protein_coding	abhydrolase domain containing 4
known_NIR_5590	chr14	54496883	54499083	+	54491928	54499083	A5SS	ENSMUST00000180359.8	known	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.08	2	23	2	23	y	0.20	3	12	3	12	y	0.11	1	8	1	8	n	0.05	1	18	1	18	n	0.00	0	15	0	15	n	0.00	0	4	0	4	n	0.13	2	13	2	13	y	0.11	1	8	1	8	n	0.17	2	10	2	10	y	ENSMUSG00000040997.15	Abhd4	chr14	protein_coding	abhydrolase domain containing 4
known_NIR_5591	chr14	54496883	54499083	+	54496776	54499083	A5SS	ENSMUST00000041197.13	known	0.00	0	19	0	19	n	0.00	0	22	0	22	n	0.00	0	28	0	28	n	0.10	2	19	2	19	y	0.07	3	40	3	40	y	0.06	1	17	1	17	n	0.08	1	11	1	11	n	0.00	0	9	0	9	n	0.00	0	20	0	20	n	0.08	2	22	2	22	y	0.05	1	21	1	21	n	0.08	2	24	2	24	y	ENSMUSG00000040997.15	Abhd4	chr14	protein_coding	abhydrolase domain containing 4
known_NIR_5592	chr14	54502849	54504317	+	54502849	54504452	A3SS	ENSMUST00000180359.8	known	0.03	2	67	2	67	y	0.00	0	63	0	63	n	0.00	0	63	0	63	n	0.00	0	76	0	76	n	0.00	0	106	0	106	n	0.00	0	23	0	23	n	0.00	0	97	0	97	n	0.00	0	40	0	40	n	0.01	1	70	1	70	n	0.01	1	98	1	98	n	0.00	0	57	0	57	n	0.01	1	80	1	80	n	ENSMUSG00000040997.15	Abhd4	chr14	protein_coding	abhydrolase domain containing 4
known_NIR_5593	chr14	54664695	54667039	+	54664695;54666105	54666041;54667039	ES	ENSMUST00000010550.12	known	0.01	6	553.5	6	542;565	y	0.00	2	600.0	2	548;652	y	0.01	6	832.0	6	799;865	y	0.00	1	456.5	1	440;473	n	0.01	9	693.0	9	708;678	y	0.00	2	471.0	2	483;459	y	0.00	3	801.0	3	785;817	y	0.00	1	415.5	1	424;407	n	0.00	2	456.0	2	448;464	y	0.01	4	690.0	4	709;671	y	0.01	4	634.5	4	630;639	y	0.00	2	599.5	2	575;624	y	ENSMUSG00000010406.13	Mrpl52	chr14	protein_coding	mitochondrial ribosomal protein L52
known_NIR_5594	chr14	54670098	54673202	+	54669430	54673202	A5SS	ENSMUST00000089688.6	known	0.02	1	49	1	49	n	0.00	0	31	0	31	n	0.03	3	94	3	94	y	0.00	0	22	0	22	n	0.01	1	70	1	70	n	0.02	1	57	1	57	n	0.00	0	35	0	35	n	0.00	0	44	0	44	n	0.04	1	22	1	22	n	0.00	0	53	0	53	n	0.03	1	30	1	30	n	0.02	1	45	1	45	n	ENSMUSG00000000957.12	Mmp14	chr14	protein_coding	matrix metallopeptidase 14 (membrane-inserted)
known_NIR_5595	chr14	54703178	54704917	+	54703166	54704917	A5SS	ENSMUST00000022782.10	known	0.05	3	62	3	62	y	0.00	0	39	0	39	n	0.00	0	166	0	166	n	0.00	0	87	0	87	n	0.00	0	147	0	147	n	0.04	3	73	3	73	y	0.02	3	119	3	119	y	0.03	2	74	2	74	y	0.00	0	59	0	59	n	0.04	5	122	5	122	y	0.00	0	73	0	73	n	0.01	1	82	1	82	n	ENSMUSG00000022175.10	Lrp10	chr14	protein_coding	low-density lipoprotein receptor-related protein 10
known_NIR_5596	chr14	54753648	54754704	-	54753648	54753954	A5SS&ES	ENSMUST00000147214.8	known	0.00	0	15	0	15	n	0.00	0	14	0	14	n	0.09	2	20	2	20	y	0.09	2	20	2	20	y	0.09	3	31	3	31	y	0.00	0	8	0	8	n	0.00	0	25	0	25	n	0.06	1	17	1	17	n	0.04	1	22	1	22	n	0.14	3	19	3	19	y	0.00	0	15	0	15	n	0.00	0	20	0	20	n	ENSMUSG00000023110.13	Prmt5	chr14	protein_coding	protein arginine N-methyltransferase 5
known_NIR_5597	chr14	54753648	54754704	-	54753648;54754072	54753954;54754704	ES	ENSMUST00000023873.12	known	0.00	0	14.5	0	15;14	n	0.00	0	13.0	0	14;12	n	0.10	2	18.0	2	20;16	y	0.09	2	21.5	2	20;23	y	0.09	3	31.0	3	31;31	y	0.00	0	11.0	0	8;14	n	0.00	0	22.0	0	25;19	n	0.06	1	16.5	1	17;16	n	0.05	1	17.5	1	22;13	n	0.17	3	14.5	3	19;10	y	0.00	0	14.0	0	15;13	n	0.00	0	15.5	0	20;11	n	ENSMUSG00000023110.13	Prmt5	chr14	protein_coding	protein arginine N-methyltransferase 5
known_NIR_5598	chr14	54753648	54754704	-	54754072	54754704	A3SS	ENSMUST00000133552.8	known	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.11	2	16	2	16	y	0.08	2	23	2	23	y	0.09	3	31	3	31	y	0.00	0	14	0	14	n	0.00	0	19	0	19	n	0.06	1	16	1	16	n	0.07	1	13	1	13	n	0.23	3	10	3	10	y	0.00	0	13	0	13	n	0.00	0	11	0	11	n	ENSMUSG00000023110.13	Prmt5	chr14	protein_coding	protein arginine N-methyltransferase 5
known_NIR_5599	chr14	54754072	54754625	-	54754072	54754704	A5SS	ENSMUST00000023873.12	known	0.12	2	14	2	14	y	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.04	1	23	1	23	n	0.00	0	31	0	31	n	0.00	0	14	0	14	n	0.00	0	19	0	19	n	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.09	1	10	1	10	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	ENSMUSG00000023110.13	Prmt5	chr14	protein_coding	protein arginine N-methyltransferase 5
known_NIR_5600	chr14	54787493;54788211	54788099;54789594	-	54787493	54789594	cassetteExon	ENSMUST00000022784.9	known	0.16	3.5	19	3;4	19	y	0.06	1.5	23	1;2	23	n	0.03	0.5	17	1;0	17	n	0.11	3.5	27	6;1	27	n	0.05	1.0	20	2;0	20	n	0.27	1.5	4	1;2	4	n	0.09	2.5	24	4;1	24	n	0.12	1.0	7	2;0	7	n	0.02	0.5	25	1;0	25	n	0.13	6.0	40	7;5	40	y	0.06	2.0	32	2;2	32	y	0.09	3.0	29	2;4	29	y	ENSMUSG00000022177.10	Haus4	chr14	protein_coding	HAUS augmin-like complex, subunit 4
known_NIR_5601	chr14	54851938	54854233	-	54851938	54853972	A5SS	ENSMUST00000022803.6	known	0.01	5	592	5	592	y	0.00	3	673	3	673	y	0.00	4	872	4	872	y	0.00	0	657	0	657	n	0.01	6	738	6	738	y	0.01	5	484	5	484	y	0.00	0	838	0	838	n	0.01	5	417	5	417	y	0.01	4	523	4	523	y	0.00	0	886	0	886	n	0.01	5	817	5	817	y	0.01	4	721	4	721	y	ENSMUSG00000022193.8	Psmb5	chr14	protein_coding	proteasome (prosome, macropain) subunit, beta type 5
known_NIR_5602	chr14	54884024	54884160	-	54884060	54884160	A3SS	ENSMUST00000126166.8	known	0.27	28	77	28	77	y	0.26	22	64	22	64	y	0.29	29	70	29	70	y	0.24	20	64	20	64	y	0.31	42	93	42	93	y	0.10	7	60	7	60	y	0.31	37	82	37	82	y	0.15	9	52	9	52	y	0.19	12	50	12	50	y	0.17	18	90	18	90	y	0.26	19	54	19	54	y	0.12	14	100	14	100	y	ENSMUSG00000022185.20	Acin1	chr14	protein_coding	apoptotic chromatin condensation inducer 1
known_NIR_5603	chr14	54884290	54885545	-	54884293	54885545	A3SS	ENSMUST00000126166.8	known	0.14	8	49	8	49	y	0.25	11	33	11	33	y	0.18	14	62	14	62	y	0.12	8	58	8	58	y	0.16	14	71	14	71	y	0.13	7	46	7	46	y	0.16	10	52	10	52	y	0.06	2	31	2	31	y	0.20	9	37	9	37	y	0.19	14	61	14	61	y	0.26	12	34	12	34	y	0.16	11	59	11	59	y	ENSMUSG00000022185.20	Acin1	chr14	protein_coding	apoptotic chromatin condensation inducer 1
known_NIR_5604	chr14	54885587	54886989	-	54885587	54889174	A5SS	ENSMUST00000126166.8	known	0.06	3	46	3	46	y	0.19	5	21	5	21	y	0.07	4	54	4	54	y	0.02	1	50	1	50	n	0.08	5	60	5	60	y	0.16	5	27	5	27	y	0.24	12	38	12	38	y	0.09	3	31	3	31	y	0.20	9	37	9	37	y	0.04	3	64	3	64	y	0.12	5	35	5	35	y	0.04	2	50	2	50	y	ENSMUSG00000022185.20	Acin1	chr14	protein_coding	apoptotic chromatin condensation inducer 1
known_NIR_5605	chr14	54888344	54889174	-	54885587	54889174	A3SS	ENSMUST00000126166.8	known	0.00	0	46	0	46	n	0.00	0	21	0	21	n	0.00	0	54	0	54	n	0.02	1	50	1	50	n	0.00	0	60	0	60	n	0.04	1	27	1	27	n	0.00	0	38	0	38	n	0.00	0	31	0	31	n	0.00	0	37	0	37	n	0.04	3	64	3	64	y	0.00	0	35	0	35	n	0.00	0	50	0	50	n	ENSMUSG00000022185.20	Acin1	chr14	protein_coding	apoptotic chromatin condensation inducer 1
known_NIR_5606	chr14	54889315	54890671	-	54889315	54899625	A5SS	ENSMUST00000022793.15	known	0.05	3	56	3	56	y	0.09	5	50	5	50	y	0.10	7	62	7	62	y	0.14	10	59	10	59	y	0.08	7	78	7	78	y	0.11	5	42	5	42	y	0.10	7	64	7	64	y	0.11	6	48	6	48	y	0.04	2	44	2	44	y	0.09	5	50	5	50	y	0.11	6	50	6	50	y	0.15	14	81	14	81	y	ENSMUSG00000022185.20	Acin1	chr14	protein_coding	apoptotic chromatin condensation inducer 1
known_NIR_5607	chr14	54889315	54890992	-	54889315	54890671	A5SS&ES	ENSMUST00000022794.14	known	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.46	6	7	6	7	y	0.00	0	10	0	10	n	0.36	4	7	4	7	y	0.17	1	5	1	5	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.40	4	6	4	6	y	0.00	0	14	0	14	n	ENSMUSG00000022185.20	Acin1	chr14	protein_coding	apoptotic chromatin condensation inducer 1
known_NIR_5608	chr14	54889315	54899625	-	54889315	54890992	5pMXE	ENSMUST00000126166.8	known	0.98	56	1	56	1	n	1.00	50	0	50	0	n	0.91	62	6	62	6	y	1.00	59	0	59	0	n	0.95	78	4	78	4	y	0.98	42	1	42	1	n	1.00	64	0	64	0	n	1.00	48	0	48	0	n	0.98	44	1	44	1	n	1.00	50	0	50	0	n	0.93	50	4	50	4	y	1.00	81	0	81	0	n	ENSMUSG00000022185.20	Acin1	chr14	protein_coding	apoptotic chromatin condensation inducer 1
known_NIR_5609	chr14	54889315;54890735	54890671;54890992	-	54889315	54890992	cassetteExon	ENSMUST00000126166.8	known	0.75	3.0	1	3;3	1	n	1.00	2.5	0	5;0	0	n	0.43	4.5	6	7;2	6	y	1.00	6.0	0	10;2	0	n	0.58	5.5	4	7;4	4	y	0.75	3.0	1	5;1	1	n	1.00	4.5	0	7;2	0	n	1.00	4.5	0	6;3	0	n	0.71	2.5	1	2;3	1	n	1.00	3.0	0	5;1	0	n	0.47	3.5	4	6;1	4	n	1.00	9.0	0	14;4	0	n	ENSMUSG00000022185.20	Acin1	chr14	protein_coding	apoptotic chromatin condensation inducer 1
known_NIR_5610	chr14	54889315;54890774	54890671;54890992	-	54889315	54890992	cassetteExon	ENSMUST00000126166.8	known	0.75	3.0	1	3;3	1	n	1.00	3.5	0	5;2	0	n	0.37	3.5	6	7;0	6	n	1.00	6.5	0	10;3	0	n	0.53	4.5	4	7;2	4	y	0.75	3.0	1	5;1	1	n	1.00	3.5	0	7;0	0	n	1.00	4.0	0	6;2	0	n	0.50	1.0	1	2;0	1	n	1.00	2.5	0	5;0	0	n	0.50	4.0	4	6;2	4	y	1.00	8.5	0	14;3	0	n	ENSMUSG00000022185.20	Acin1	chr14	protein_coding	apoptotic chromatin condensation inducer 1
known_NIR_5611	chr14	54904618	54916698	-	54904618;54916319	54916200;54916698	ES	ENSMUST00000022793.15	known	0.55	17	14.0	17	12;16	y	0.69	18	8.0	18	8;8	y	0.85	41	7.5	41	6;9	y	0.64	30	17.0	30	14;20	y	0.67	41	20.0	41	18;22	y	0.51	11	10.5	11	7;14	y	0.59	25	17.5	25	18;17	y	0.72	18	7.0	18	9;5	y	0.67	19	9.5	19	10;9	y	0.64	27	15.0	27	9;21	y	0.61	14	9.0	14	8;10	y	0.53	21	18.5	21	16;21	y	ENSMUSG00000022185.20	Acin1	chr14	protein_coding	apoptotic chromatin condensation inducer 1
known_NIR_5612	chr14	54913302	54916200	-	54904618	54916200	A3SS	ENSMUST00000022793.15	known	0.14	2	12	2	12	y	0.00	0	8	0	8	n	0.33	3	6	3	6	n	0.00	0	14	0	14	n	0.05	1	18	1	18	n	0.00	0	7	0	7	n	0.00	0	18	0	18	n	0.00	0	9	0	9	n	0.09	1	10	1	10	n	0.18	2	9	2	9	y	0.00	0	8	0	8	n	0.00	0	16	0	16	n	ENSMUSG00000022185.20	Acin1	chr14	protein_coding	apoptotic chromatin condensation inducer 1
known_NIR_5613	chr14	55121161	55121254	+	55120963	55121254	A5SS	ENSMUST00000022806.10	known	0.18	3	14	3	14	y	0.00	0	14	0	14	n	0.00	0	38	0	38	n	0.33	5	10	5	10	y	0.05	2	39	2	39	y	0.21	7	27	7	27	y	0.05	1	21	1	21	n	0.14	4	25	4	25	y	0.06	1	16	1	16	n	0.05	2	36	2	36	y	0.06	1	15	1	15	n	0.00	0	27	0	27	n	ENSMUSG00000089682.11	Bcl2l2	chr14	protein_coding	BCL2-like 2
known_NIR_5614	chr14	55122270	55132305	+	55122270	55122841	3pMXE	ENSMUST00000022806.10	known	0.06	1	15	1	15	n	0.06	1	16	1	16	n	0.00	0	41	0	41	n	0.00	0	27	0	27	n	0.00	0	34	0	34	n	0.00	0	17	0	17	n	0.05	2	35	2	35	y	0.00	0	15	0	15	n	0.00	0	22	0	22	n	0.00	0	35	0	35	n	0.00	0	13	0	13	n	0.00	0	28	0	28	n	ENSMUSG00000089682.11	Bcl2l2	chr14	protein_coding	BCL2-like 2
known_NIR_5615	chr14	55131951	55132305	+	55122270	55132305	A5SS	ENSMUST00000134077.2	known	1.00	286	1	286	1	n	1.00	208	1	208	1	n	1.00	304	0	304	0	n	1.00	255	0	255	0	n	1.00	424	0	424	0	n	1.00	175	0	175	0	n	0.99	353	2	353	2	y	1.00	204	0	204	0	n	1.00	303	0	303	0	n	1.00	395	0	395	0	n	1.00	371	0	371	0	n	1.00	355	0	355	0	n	ENSMUSG00000092232.2	Gm20521	chr14	protein_coding	predicted gene 20521
known_NIR_5616	chr14	55131951	55132305	+	55130195	55132305	A5SS	ENSMUST00000140691.8	known	1.00	286	0	286	0	n	1.00	208	0	208	0	n	1.00	304	0	304	0	n	1.00	255	0	255	0	n	1.00	424	1	424	1	n	1.00	175	0	175	0	n	0.99	353	3	353	3	y	1.00	204	0	204	0	n	1.00	303	0	303	0	n	1.00	395	0	395	0	n	0.99	371	2	371	2	y	1.00	355	0	355	0	n	ENSMUSG00000022194.16	Pabpn1	chr14	protein_coding	poly(A) binding protein, nuclear 1
known_NIR_5617	chr14	55132126	55132305	+	55122270	55132305	A5SS	ENSMUST00000134077.2	known	0.88	7	1	7	1	n	0.92	11	1	11	1	n	1.00	9	0	9	0	n	1.00	9	0	9	0	n	1.00	8	0	8	0	n	1.00	5	0	5	0	n	0.86	12	2	12	2	y	1.00	7	0	7	0	n	1.00	12	0	12	0	n	1.00	10	0	10	0	n	1.00	11	0	11	0	n	1.00	5	0	5	0	n	ENSMUSG00000092232.2	Gm20521	chr14	protein_coding	predicted gene 20521
known_NIR_5618	chr14	55132126	55132305	+	55130195	55132305	A5SS	ENSMUST00000140691.8	known	1.00	7	0	7	0	n	1.00	11	0	11	0	n	1.00	9	0	9	0	n	1.00	9	0	9	0	n	0.89	8	1	8	1	n	1.00	5	0	5	0	n	0.80	12	3	12	3	y	1.00	7	0	7	0	n	1.00	12	0	12	0	n	1.00	10	0	10	0	n	0.85	11	2	11	2	y	1.00	5	0	5	0	n	ENSMUSG00000022194.16	Pabpn1	chr14	protein_coding	poly(A) binding protein, nuclear 1
known_NIR_5619	chr14	55132126	55132305	+	55131951	55132305	A5SS	ENSMUST00000116476.9	known	0.02	7	286	7	286	y	0.05	11	208	11	208	y	0.03	9	304	9	304	y	0.03	9	255	9	255	y	0.02	8	424	8	424	y	0.03	5	175	5	175	y	0.03	12	353	12	353	y	0.03	7	204	7	204	y	0.04	12	303	12	303	y	0.02	10	395	10	395	y	0.03	11	371	11	371	y	0.01	5	355	5	355	y	ENSMUSG00000022194.16	Pabpn1	chr14	protein_coding	poly(A) binding protein, nuclear 1
known_NIR_5620	chr14	55305765	55307566	-	55305765	55307596	A5SS	ENSMUST00000036328.9	known	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.22	2	7	2	7	n	0.18	2	9	2	9	y	ENSMUSG00000040721.10	Zfhx2	chr14	protein_coding	zinc finger homeobox 2
known_NIR_5621	chr14	55341915	55342288	-	55341915	55342039	A5SS	ENSMUST00000133004.8	known	0.00	0	17	0	17	n	0.14	1	6	1	6	n	0.59	10	7	10	7	y	0.00	0	12	0	12	n	0.12	2	14	2	14	y	0.25	2	6	2	6	n	0.15	2	11	2	11	y	0.14	1	6	1	6	n	0.17	2	10	2	10	y	0.00	0	17	0	17	n	0.00	0	3	0	3	n	0.07	1	14	1	14	n	ENSMUSG00000040701.17	Ap1g2	chr14	protein_coding	adaptor protein complex AP-1, gamma 2 subunit
known_NIR_5622	chr14	55341915;55342115	55342039;55342288	-	55341915	55342288	cassetteExon	ENSMUST00000151314.9	known	1.00	15.0	0	17;13	0	n	0.78	3.5	1	6;1	1	n	0.43	7.5	10	7;8	10	y	1.00	10.0	0	12;8	0	n	0.89	16.0	2	14;18	2	y	0.79	7.5	2	6;9	2	y	0.82	9.0	2	11;7	2	y	0.83	5.0	1	6;4	1	n	0.83	9.5	2	10;9	2	y	1.00	15.5	0	17;14	0	n	1.00	8.5	0	3;14	0	n	0.94	15.0	1	14;16	1	n	ENSMUSG00000040701.17	Ap1g2	chr14	protein_coding	adaptor protein complex AP-1, gamma 2 subunit
known_NIR_5623	chr14	55717660	55723574	+	55717660	55725041	A3SS	ENSMUST00000226902.2	known	1.00	504	0	504	0	n	1.00	526	0	526	0	n	0.99	460	4	460	4	y	1.00	628	0	628	0	n	1.00	693	0	693	0	n	0.99	262	2	262	2	y	1.00	864	1	864	1	n	1.00	371	1	371	1	n	1.00	461	2	461	2	y	1.00	884	0	884	0	n	1.00	595	0	595	0	n	1.00	539	0	539	0	n	ENSMUSG00000022210.8	Dhrs4	chr14	protein_coding	dehydrogenase/reductase (SDR family) member 4
known_NIR_5624	chr14	55717660	55724550	+	55717660;55723675	55723574;55724550	ES	ENSMUST00000022821.8	known	0.00	0	536.5	0	504;569	n	0.00	1	573.5	1	526;621	n	0.01	5	473.0	5	460;486	y	0.00	0	630.5	0	628;633	n	0.00	1	699.5	1	693;706	n	0.00	0	265.0	0	262;268	n	0.00	1	898.0	1	864;932	n	0.01	3	391.5	3	371;412	y	0.00	0	479.5	0	461;498	n	0.00	3	948.5	3	884;1013	y	0.00	0	595.0	0	595;595	n	0.00	0	570.0	0	539;601	n	ENSMUSG00000022210.8	Dhrs4	chr14	protein_coding	dehydrogenase/reductase (SDR family) member 4
known_NIR_5625	chr14	55717660	55725041	+	55724768	55725041	5pMXE	ENSMUST00000227542.2	known	0.00	0	554	0	554	n	0.00	0	592	0	592	n	0.01	4	480	4	480	y	0.00	0	671	0	671	n	0.00	0	700	0	700	n	0.01	2	270	2	270	y	0.00	1	940	1	940	n	0.00	1	400	1	400	n	0.00	2	482	2	482	y	0.00	0	911	0	911	n	0.00	0	649	0	649	n	0.00	0	542	0	542	n	ENSMUSG00000022210.8	Dhrs4	chr14	protein_coding	dehydrogenase/reductase (SDR family) member 4
known_NIR_5626	chr14	55717660;55724620	55724550;55724717	+	55717660;55723675	55723574;55724717	MXE	ENSMUST00000228353.2	known	0.50	248.5	252.0	0;497	504;0	n	0.52	286.5	263.0	1;572	526;0	n	0.52	246.5	230.5	5;488	460;1	n	0.51	331.0	314.5	0;662	628;1	n	0.50	344.5	347.5	1;688	693;2	n	0.52	141.5	131.0	0;283	262;0	n	0.53	481.5	433.0	1;962	864;2	n	0.51	196.5	186.5	3;390	371;2	y	0.50	236.5	232.0	0;473	461;3	n	0.52	486.5	442.0	3;970	884;0	n	0.50	302.5	298.5	0;605	595;2	n	0.52	295.5	269.5	0;591	539;0	n	ENSMUSG00000022210.8	Dhrs4	chr14	protein_coding	dehydrogenase/reductase (SDR family) member 4
known_NIR_5627	chr14	55717660;55724768	55724550;55725041	+	55717660	55725041	cassetteExon	ENSMUST00000226902.2	known	1.00	277.0	0	0;554	0	n	1.00	296.5	0	1;592	0	n	0.98	242.5	4	5;480	4	y	1.00	335.5	0	0;671	0	n	1.00	350.5	0	1;700	0	n	0.99	135.0	2	0;270	2	n	1.00	470.5	1	1;940	1	n	1.00	201.5	1	3;400	1	n	0.99	241.0	2	0;482	2	n	1.00	457.0	0	3;911	0	n	1.00	324.5	0	0;649	0	n	1.00	271.0	0	0;542	0	n	ENSMUSG00000022210.8	Dhrs4	chr14	protein_coding	dehydrogenase/reductase (SDR family) member 4
known_NIR_5628	chr14	55723675	55724717	+	55723675	55724550	A3SS	ENSMUST00000227513.2	known	0.00	0	569	0	569	n	0.00	0	621	0	621	n	0.00	1	486	1	486	n	0.00	1	633	1	633	n	0.00	2	706	2	706	y	0.00	0	268	0	268	n	0.00	2	932	2	932	y	0.00	2	412	2	412	y	0.01	3	498	3	498	y	0.00	0	1013	0	1013	n	0.00	2	595	2	595	y	0.00	0	601	0	601	n	ENSMUSG00000022210.8	Dhrs4	chr14	protein_coding	dehydrogenase/reductase (SDR family) member 4
known_NIR_5629	chr14	55723675	55724717	+	55723675;55724620	55724550;55724717	ES	ENSMUST00000022821.8	known	0.00	0	533.0	0	569;497	n	0.00	0	596.5	0	621;572	n	0.00	1	487.0	1	486;488	n	0.00	1	647.5	1	633;662	n	0.00	2	697.0	2	706;688	y	0.00	0	275.5	0	268;283	n	0.00	2	947.0	2	932;962	y	0.00	2	401.0	2	412;390	y	0.01	3	485.5	3	498;473	y	0.00	0	991.5	0	1013;970	n	0.00	2	600.0	2	595;605	y	0.00	0	596.0	0	601;591	n	ENSMUSG00000022210.8	Dhrs4	chr14	protein_coding	dehydrogenase/reductase (SDR family) member 4
known_NIR_5630	chr14	55797578	55798532	+	55797578	55797898	3pMXE	ENSMUST00000151245.2	known	0.53	21	19	21	19	y	0.32	11	23	11	23	y	0.18	3	14	3	14	y	0.33	18	37	18	37	y	0.43	19	25	19	25	y	0.60	6	4	6	4	y	0.42	16	22	16	22	y	0.40	8	12	8	12	y	0.31	9	20	9	20	y	0.36	19	34	19	34	y	0.48	20	22	20	22	y	0.25	11	33	11	33	y	ENSMUSG00000022214.16	Dcaf11	chr14	protein_coding	DDB1 and CUL4 associated factor 11
known_NIR_5631	chr14	55797578	55798532	+	55797578	55798667	A3SS	ENSMUST00000117236.8	known	0.24	21	67	21	67	y	0.14	11	66	11	66	y	0.07	3	40	3	40	y	0.21	18	68	18	68	y	0.19	19	83	19	83	y	0.12	6	45	6	45	y	0.15	16	94	16	94	y	0.15	8	45	8	45	y	0.14	9	55	9	55	y	0.15	19	108	19	108	y	0.23	20	66	20	66	y	0.10	11	103	11	103	y	ENSMUSG00000022214.16	Dcaf11	chr14	protein_coding	DDB1 and CUL4 associated factor 11
known_NIR_5632	chr14	55797578	55798532	+	55797578	55798693	A3SS	ENSMUST00000147981.2	known	0.88	21	3	21	3	y	0.85	11	2	11	2	y	0.50	3	3	3	3	n	0.67	18	9	18	9	y	0.79	19	5	19	5	y	1.00	6	0	6	0	n	0.94	16	1	16	1	n	1.00	8	0	8	0	n	0.90	9	1	9	1	n	0.70	19	8	19	8	y	0.95	20	1	20	1	n	0.73	11	4	11	4	y	ENSMUSG00000022214.16	Dcaf11	chr14	protein_coding	DDB1 and CUL4 associated factor 11
known_NIR_5633	chr14	55797578	55798532	+	55797578;55798084	55797898;55798532	ES	ENSMUST00000133256.8	known	0.59	21	14.5	21	19;10	y	0.35	11	20.5	11	23;18	y	0.25	3	9.0	3	14;4	y	0.40	18	27.0	18	37;17	y	0.51	19	18.5	19	25;12	y	0.48	6	6.5	6	4;9	y	0.45	16	19.5	16	22;17	y	0.52	8	7.5	8	12;3	y	0.35	9	16.5	9	20;13	y	0.40	19	28.0	19	34;22	y	0.52	20	18.5	20	22;15	y	0.30	11	26.0	11	33;19	y	ENSMUSG00000022214.16	Dcaf11	chr14	protein_coding	DDB1 and CUL4 associated factor 11
known_NIR_5634	chr14	55797578	55798532	+	55798084	55798532	5pMXE	ENSMUST00000152681.8	known	0.68	21	10	21	10	y	0.38	11	18	11	18	y	0.43	3	4	3	4	n	0.51	18	17	18	17	y	0.61	19	12	19	12	y	0.40	6	9	6	9	y	0.48	16	17	16	17	y	0.73	8	3	8	3	y	0.41	9	13	9	13	y	0.46	19	22	19	22	y	0.57	20	15	20	15	y	0.37	11	19	11	19	y	ENSMUSG00000022214.16	Dcaf11	chr14	protein_coding	DDB1 and CUL4 associated factor 11
known_NIR_5635	chr14	55797578	55798532	+	55798275	55798532	5pMXE	ENSMUST00000127991.2	known	0.95	21	1	21	1	n	1.00	11	0	11	0	n	0.50	3	3	3	3	n	0.95	18	1	18	1	n	1.00	19	0	19	0	n	0.75	6	2	6	2	n	0.89	16	2	16	2	y	1.00	8	0	8	0	n	1.00	9	0	9	0	n	0.86	19	3	19	3	y	0.91	20	2	20	2	y	0.85	11	2	11	2	y	ENSMUSG00000022214.16	Dcaf11	chr14	protein_coding	DDB1 and CUL4 associated factor 11
known_NIR_5636	chr14	55797578	55798667	+	55797578	55797898	3pMXE	ENSMUST00000151245.2	known	0.78	67	19	67	19	y	0.74	66	23	66	23	y	0.74	40	14	40	14	y	0.65	68	37	68	37	y	0.77	83	25	83	25	y	0.92	45	4	45	4	y	0.81	94	22	94	22	y	0.79	45	12	45	12	y	0.73	55	20	55	20	y	0.76	108	34	108	34	y	0.75	66	22	66	22	y	0.76	103	33	103	33	y	ENSMUSG00000022214.16	Dcaf11	chr14	protein_coding	DDB1 and CUL4 associated factor 11
known_NIR_5637	chr14	55797578	55798667	+	55798084	55798667	5pMXE	ENSMUST00000143431.2	known	0.82	67	15	67	15	y	0.84	66	13	66	13	y	0.83	40	8	40	8	y	0.86	68	11	68	11	y	0.87	83	12	83	12	y	0.88	45	6	45	6	y	0.90	94	10	94	10	y	0.80	45	11	45	11	y	0.81	55	13	55	13	y	0.79	108	29	108	29	y	0.84	66	13	66	13	y	0.87	103	15	103	15	y	ENSMUSG00000022214.16	Dcaf11	chr14	protein_coding	DDB1 and CUL4 associated factor 11
known_NIR_5638	chr14	55797578	55798693	+	55797578	55797898	3pMXE	ENSMUST00000151245.2	known	0.14	3	19	3	19	y	0.08	2	23	2	23	y	0.18	3	14	3	14	y	0.20	9	37	9	37	y	0.17	5	25	5	25	y	0.00	0	4	0	4	n	0.04	1	22	1	22	n	0.00	0	12	0	12	n	0.05	1	20	1	20	n	0.19	8	34	8	34	y	0.04	1	22	1	22	n	0.11	4	33	4	33	y	ENSMUSG00000022214.16	Dcaf11	chr14	protein_coding	DDB1 and CUL4 associated factor 11
known_NIR_5639	chr14	55797578	55798693	+	55797578	55798667	A3SS	ENSMUST00000117236.8	known	0.04	3	67	3	67	y	0.03	2	66	2	66	y	0.07	3	40	3	40	y	0.12	9	68	9	68	y	0.06	5	83	5	83	y	0.00	0	45	0	45	n	0.01	1	94	1	94	n	0.00	0	45	0	45	n	0.02	1	55	1	55	n	0.07	8	108	8	108	y	0.01	1	66	1	66	n	0.04	4	103	4	103	y	ENSMUSG00000022214.16	Dcaf11	chr14	protein_coding	DDB1 and CUL4 associated factor 11
known_NIR_5640	chr14	55797578	55798693	+	55798084	55798693	5pMXE	ENSMUST00000150481.8	known	1.00	3	0	3	0	n	1.00	2	0	2	0	n	0.75	3	1	3	1	n	0.82	9	2	9	2	y	0.50	5	5	5	5	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.80	8	2	8	2	y	0.33	1	2	1	2	n	0.40	4	6	4	6	y	ENSMUSG00000022214.16	Dcaf11	chr14	protein_coding	DDB1 and CUL4 associated factor 11
known_NIR_5641	chr14	55797578;55798084	55797898;55798667	+	55797578	55798667	cassetteExon	ENSMUST00000117236.8	known	0.20	17.0	67	19;15	67	y	0.21	18.0	66	23;13	66	y	0.22	11.0	40	14;8	40	y	0.26	24.0	68	37;11	68	y	0.18	18.5	83	25;12	83	y	0.10	5.0	45	4;6	45	y	0.15	16.0	94	22;10	94	y	0.20	11.5	45	12;11	45	y	0.23	16.5	55	20;13	55	y	0.23	31.5	108	34;29	108	y	0.21	17.5	66	22;13	66	y	0.19	24.0	103	33;15	103	y	ENSMUSG00000022214.16	Dcaf11	chr14	protein_coding	DDB1 and CUL4 associated factor 11
known_NIR_5642	chr14	55797578;55798084	55797898;55798693	+	55797578	55798693	cassetteExon	ENSMUST00000147981.2	known	0.76	9.5	3	19;0	3	n	0.85	11.5	2	23;0	2	n	0.71	7.5	3	14;1	3	n	0.68	19.5	9	37;2	9	y	0.75	15.0	5	25;5	5	y	1.00	2.5	0	4;1	0	n	0.92	11.0	1	22;0	1	n	1.00	6.0	0	12;0	0	n	0.91	10.0	1	20;0	1	n	0.69	18.0	8	34;2	8	y	0.92	12.0	1	22;2	1	n	0.83	19.5	4	33;6	4	y	ENSMUSG00000022214.16	Dcaf11	chr14	protein_coding	DDB1 and CUL4 associated factor 11
known_NIR_5643	chr14	55797578;55798275	55797898;55798532	+	55797578	55798532	cassetteExon	ENSMUST00000150019.8	known	0.32	10.0	21	19;1	21	n	0.51	11.5	11	23;0	11	n	0.74	8.5	3	14;3	3	y	0.51	19.0	18	37;1	18	n	0.40	12.5	19	25;0	19	n	0.33	3.0	6	4;2	6	y	0.43	12.0	16	22;2	16	y	0.43	6.0	8	12;0	8	n	0.53	10.0	9	20;0	9	n	0.49	18.5	19	34;3	19	y	0.38	12.0	20	22;2	20	y	0.61	17.5	11	33;2	11	y	ENSMUSG00000022214.16	Dcaf11	chr14	protein_coding	DDB1 and CUL4 associated factor 11
known_NIR_5644	chr14	55798084	55798667	+	55798084	55798532	A3SS	ENSMUST00000133256.8	known	0.60	15	10	15	10	y	0.42	13	18	13	18	y	0.67	8	4	8	4	y	0.39	11	17	11	17	y	0.50	12	12	12	12	y	0.40	6	9	6	9	y	0.37	10	17	10	17	y	0.79	11	3	11	3	y	0.50	13	13	13	13	y	0.57	29	22	29	22	y	0.46	13	15	13	15	y	0.44	15	19	15	19	y	ENSMUSG00000022214.16	Dcaf11	chr14	protein_coding	DDB1 and CUL4 associated factor 11
known_NIR_5645	chr14	55798084	55798693	+	55798084	55798532	A3SS	ENSMUST00000133256.8	known	0.00	0	10	0	10	n	0.00	0	18	0	18	n	0.20	1	4	1	4	n	0.11	2	17	2	17	y	0.29	5	12	5	12	y	0.10	1	9	1	9	n	0.00	0	17	0	17	n	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.08	2	22	2	22	y	0.12	2	15	2	15	y	0.24	6	19	6	19	y	ENSMUSG00000022214.16	Dcaf11	chr14	protein_coding	DDB1 and CUL4 associated factor 11
known_NIR_5646	chr14	55798084	55798693	+	55798084	55798667	A3SS	ENSMUST00000143431.2	known	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.11	1	8	1	8	n	0.15	2	11	2	11	y	0.29	5	12	5	12	y	0.14	1	6	1	6	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.06	2	29	2	29	y	0.13	2	13	2	13	y	0.29	6	15	6	15	y	ENSMUSG00000022214.16	Dcaf11	chr14	protein_coding	DDB1 and CUL4 associated factor 11
known_NIR_5647	chr14	55798275	55798532	+	55798084	55798532	A5SS	ENSMUST00000133256.8	known	0.09	1	10	1	10	n	0.00	0	18	0	18	n	0.43	3	4	3	4	n	0.06	1	17	1	17	n	0.00	0	12	0	12	n	0.18	2	9	2	9	y	0.11	2	17	2	17	y	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.12	3	22	3	22	y	0.12	2	15	2	15	y	0.10	2	19	2	19	y	ENSMUSG00000022214.16	Dcaf11	chr14	protein_coding	DDB1 and CUL4 associated factor 11
known_NIR_5648	chr14	55798432	55798532	+	55797578	55798532	A5SS	ENSMUST00000150019.8	known	0.22	6	21	6	21	y	0.21	3	11	3	11	y	0.25	1	3	1	3	n	0.31	8	18	8	18	y	0.27	7	19	7	19	y	0.14	1	6	1	6	n	0.33	8	16	8	16	y	0.50	8	8	8	8	y	0.40	6	9	6	9	y	0.32	9	19	9	19	y	0.23	6	20	6	20	y	0.48	10	11	10	11	y	ENSMUSG00000022214.16	Dcaf11	chr14	protein_coding	DDB1 and CUL4 associated factor 11
known_NIR_5649	chr14	55798432	55798532	+	55798084	55798532	A5SS	ENSMUST00000133256.8	known	0.38	6	10	6	10	y	0.14	3	18	3	18	y	0.20	1	4	1	4	n	0.32	8	17	8	17	y	0.37	7	12	7	12	y	0.10	1	9	1	9	n	0.32	8	17	8	17	y	0.73	8	3	8	3	y	0.32	6	13	6	13	y	0.29	9	22	9	22	y	0.29	6	15	6	15	y	0.34	10	19	10	19	y	ENSMUSG00000022214.16	Dcaf11	chr14	protein_coding	DDB1 and CUL4 associated factor 11
known_NIR_5650	chr14	55798432	55798532	+	55798275	55798532	A5SS	ENSMUST00000127991.2	known	0.86	6	1	6	1	n	1.00	3	0	3	0	n	0.25	1	3	1	3	n	0.89	8	1	8	1	n	1.00	7	0	7	0	n	0.33	1	2	1	2	n	0.80	8	2	8	2	y	1.00	8	0	8	0	n	1.00	6	0	6	0	n	0.75	9	3	9	3	y	0.75	6	2	6	2	n	0.83	10	2	10	2	y	ENSMUSG00000022214.16	Dcaf11	chr14	protein_coding	DDB1 and CUL4 associated factor 11
known_NIR_5651	chr14	55798876	55800349	+	55798899	55800349	A5SS	ENSMUST00000117236.8	known	0.19	87	381	87	381	y	0.15	58	334	58	334	y	0.13	41	275	41	275	y	0.15	94	541	94	541	y	0.13	79	531	79	531	y	0.14	38	240	38	240	y	0.18	108	497	108	497	y	0.10	34	290	34	290	y	0.17	73	350	73	350	y	0.17	130	635	130	635	y	0.22	107	389	107	389	y	0.20	134	549	134	549	y	ENSMUSG00000022214.16	Dcaf11	chr14	protein_coding	DDB1 and CUL4 associated factor 11
known_NIR_5652	chr14	55798899	55800404	+	55798899	55800349	A3SS	ENSMUST00000117236.8	known	0.00	0	381	0	381	n	0.00	0	334	0	334	n	0.02	6	275	6	275	y	0.00	0	541	0	541	n	0.00	0	531	0	531	n	0.00	0	240	0	240	n	0.00	0	497	0	497	n	0.00	0	290	0	290	n	0.00	0	350	0	350	n	0.00	0	635	0	635	n	0.00	0	389	0	389	n	0.00	0	549	0	549	n	ENSMUSG00000022214.16	Dcaf11	chr14	protein_coding	DDB1 and CUL4 associated factor 11
known_NIR_5653	chr14	55800956	55801510	+	55800956;55801241	55801177;55801510	ES	ENSMUST00000117236.8	known	0.00	1	563.5	1	483;644	n	0.01	3	464.5	3	386;543	y	0.01	2	381.0	2	316;446	y	0.00	1	742.5	1	685;800	n	0.01	4	768.5	4	662;875	y	0.00	0	279.5	0	239;320	n	0.00	2	699.5	2	608;791	y	0.00	0	347.0	0	319;375	n	0.00	2	579.5	2	530;629	y	0.00	0	841.0	0	729;953	n	0.00	0	619.5	0	528;711	n	0.00	0	795.0	0	711;879	n	ENSMUSG00000022214.16	Dcaf11	chr14	protein_coding	DDB1 and CUL4 associated factor 11
known_NIR_5654	chr14	55803343	55804321	+	55803279	55804321	A5SS	ENSMUST00000117236.8	known	0.24	161	506	161	506	y	0.25	148	447	148	447	y	0.25	98	298	98	298	y	0.25	178	536	178	536	y	0.25	204	606	204	606	y	0.25	91	270	91	270	y	0.30	243	570	243	570	y	0.31	113	252	113	252	y	0.24	131	406	131	406	y	0.21	181	686	181	686	y	0.27	209	558	209	558	y	0.28	235	613	235	613	y	ENSMUSG00000022214.16	Dcaf11	chr14	protein_coding	DDB1 and CUL4 associated factor 11
known_NIR_5655	chr14	55817084	55817261	+	55817084	55817228	A3SS	ENSMUST00000174484.8	known	0.00	0	383	0	383	n	0.00	0	457	0	457	n	0.00	0	420	0	420	n	0.00	0	390	0	390	n	0.01	4	456	4	456	y	0.00	0	205	0	205	n	0.00	0	501	0	501	n	0.00	0	241	0	241	n	0.00	0	412	0	412	n	0.00	0	584	0	584	n	0.00	0	426	0	426	n	0.00	0	450	0	450	n	ENSMUSG00000022216.18	Psme1	chr14	protein_coding	proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)
known_NIR_5656	chr14	55817616	55817739	+	55817616	55817787	A3SS	ENSMUST00000174484.8	known	0.20	93	375	93	375	y	0.15	84	459	84	459	y	0.20	96	376	96	376	y	0.17	72	340	72	340	y	0.18	102	463	102	463	y	0.18	40	185	40	185	y	0.18	98	446	98	446	y	0.19	54	223	54	223	y	0.18	88	399	88	399	y	0.20	140	561	140	561	y	0.14	78	463	78	463	y	0.20	101	398	101	398	y	ENSMUSG00000022216.18	Psme1	chr14	protein_coding	proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)
known_NIR_5657	chr14	55818433	55818509	+	55818429	55818509	A5SS	ENSMUST00000174484.8	known	0.00	0	517	0	517	n	0.00	1	553	1	553	n	0.01	3	416	3	416	y	0.00	0	431	0	431	n	0.00	2	580	2	580	y	0.00	0	222	0	222	n	0.01	3	594	3	594	y	0.01	3	261	3	261	y	0.00	0	439	0	439	n	0.00	3	643	3	643	y	0.01	7	597	7	597	y	0.01	4	544	4	544	y	ENSMUSG00000022216.18	Psme1	chr14	protein_coding	proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)
known_NIR_5658	chr14	55819200;55819582	55819338;55822136	-	55819200	55822136	cassetteExon	ENSMUST00000174352.8	known	0.98	92.5	2	109;76	2	y	1.00	91.0	0	107;75	0	n	1.00	30.0	0	42;18	0	n	1.00	96.5	0	111;82	0	n	1.00	95.0	0	126;64	0	n	1.00	25.5	0	24;27	0	n	1.00	91.0	0	116;66	0	n	1.00	27.0	0	35;19	0	n	1.00	97.5	0	107;88	0	n	1.00	125.5	0	166;85	0	n	1.00	117.0	0	139;95	0	n	1.00	115.0	0	144;86	0	n	ENSMUSG00000022217.15	Emc9	chr14	protein_coding	ER membrane protein complex subunit 9
known_NIR_5659	chr14	55827984	55828479	-	55827984	55828299	A5SS	ENSMUST00000161807.8	known	0.00	2	465	2	465	y	0.01	5	503	5	503	y	0.01	3	458	3	458	y	0.01	3	447	3	447	y	0.00	2	583	2	583	y	0.00	0	276	0	276	n	0.00	0	573	0	573	n	0.00	0	273	0	273	n	0.01	3	457	3	457	y	0.00	3	660	3	660	y	0.01	5	532	5	532	y	0.01	5	576	5	576	y	ENSMUSG00000079197.11	Psme2	chr14	protein_coding	proteasome (prosome, macropain) activator subunit 2 (PA28 beta)
known_NIR_5660	chr14	55832758	55832930	+	55832758	55832927	A3SS	ENSMUST00000019443.15	known	0.00	0	24	0	24	n	0.00	0	30	0	30	n	0.00	0	30	0	30	n	0.03	1	31	1	31	n	0.00	0	34	0	34	n	0.00	0	11	0	11	n	0.00	0	21	0	21	n	0.18	3	14	3	14	y	0.07	2	25	2	25	y	0.00	0	31	0	31	n	0.00	0	16	0	16	n	0.10	3	27	3	27	y	ENSMUSG00000047098.19	Rnf31	chr14	protein_coding	ring finger protein 31
known_NIR_5661	chr14	55841700	55842509	+	55841700;55842010	55841925;55842509	ES	ENSMUST00000134863.8	known	0.18	3	13.5	3	4;23	y	0.35	6	11.0	6	3;19	y	0.46	16	18.5	16	11;26	y	0.45	17	20.5	17	10;31	y	0.57	19	14.5	19	3;26	y	0.86	16	2.5	16	2;3	y	0.36	7	12.5	7	7;18	y	0.55	11	9.0	11	3;15	y	0.54	10	8.5	10	5;12	y	0.48	16	17.5	16	5;30	y	0.64	8	4.5	8	0;9	n	0.60	17	11.5	17	5;18	y	ENSMUSG00000002325.16	Irf9	chr14	protein_coding	interferon regulatory factor 9
known_NIR_5662	chr14	55841700	55842509	+	55842178	55842509	5pMXE	ENSMUST00000138037.2	known	1.00	3	0	3	0	n	0.86	6	1	6	1	n	0.94	16	1	16	1	n	0.85	17	3	17	3	y	1.00	19	0	19	0	n	1.00	16	0	16	0	n	0.70	7	3	7	3	y	1.00	11	0	11	0	n	1.00	10	0	10	0	n	0.89	16	2	16	2	y	0.80	8	2	8	2	y	0.89	17	2	17	2	y	ENSMUSG00000002325.16	Irf9	chr14	protein_coding	interferon regulatory factor 9
known_NIR_5663	chr14	55841700;55842178	55841925;55842509	+	55841700	55842509	cassetteExon	ENSMUST00000130697.8	known	0.40	2.0	3	4;0	3	n	0.25	2.0	6	3;1	6	n	0.27	6.0	16	11;1	16	n	0.28	6.5	17	10;3	17	y	0.07	1.5	19	3;0	19	n	0.06	1.0	16	2;0	16	n	0.42	5.0	7	7;3	7	y	0.12	1.5	11	3;0	11	n	0.20	2.5	10	5;0	10	n	0.18	3.5	16	5;2	16	y	0.11	1.0	8	0;2	8	n	0.17	3.5	17	5;2	17	y	ENSMUSG00000002325.16	Irf9	chr14	protein_coding	interferon regulatory factor 9
known_NIR_5664	chr14	55842178	55842509	+	55842010	55842509	A5SS	ENSMUST00000134863.8	known	0.00	0	23	0	23	n	0.05	1	19	1	19	n	0.04	1	26	1	26	n	0.09	3	31	3	31	y	0.00	0	26	0	26	n	0.00	0	3	0	3	n	0.14	3	18	3	18	y	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.06	2	30	2	30	y	0.18	2	9	2	9	y	0.10	2	18	2	18	y	ENSMUSG00000002325.16	Irf9	chr14	protein_coding	interferon regulatory factor 9
known_NIR_5665	chr14	55863680	55863814	-	55863680	55864797	A5SS	ENSMUST00000047131.16	known	0.03	2	70	2	70	y	0.00	0	80	0	80	n	0.02	3	153	3	153	y	0.02	1	51	1	51	n	0.01	1	90	1	90	n	0.00	0	51	0	51	n	0.00	0	91	0	91	n	0.06	3	51	3	51	y	0.04	2	52	2	52	y	0.01	1	83	1	83	n	0.02	2	85	2	85	y	0.00	0	67	0	67	n	ENSMUSG00000002319.17	Ipo4	chr14	protein_coding	importin 4
known_NIR_5666	chr14	55866141	55866251	-	55866096	55866251	A3SS	ENSMUST00000047131.16	known	0.00	0	53	0	53	n	0.00	0	59	0	59	n	0.00	0	126	0	126	n	0.00	0	67	0	67	n	0.01	1	68	1	68	n	0.00	0	41	0	41	n	0.00	0	55	0	55	n	0.07	3	39	3	39	y	0.00	0	72	0	72	n	0.00	0	66	0	66	n	0.00	0	69	0	69	n	0.00	0	60	0	60	n	ENSMUSG00000002319.17	Ipo4	chr14	protein_coding	importin 4
known_NIR_5667	chr14	55871651	55872462	-	55871651;55871866	55871737;55872462	ES	ENSMUST00000047131.16	known	0.08	3	36.0	3	44;28	y	0.00	0	18.5	0	19;18	n	0.02	2	102.0	2	99;105	y	0.00	0	59.5	0	62;57	n	0.00	0	52.5	0	48;57	n	0.00	0	46.0	0	52;40	n	0.00	0	43.5	0	46;41	n	0.02	1	46.5	1	56;37	n	0.03	1	36.0	1	36;36	n	0.02	1	47.0	1	54;40	n	0.00	0	29.5	0	28;31	n	0.00	0	58.0	0	64;52	n	ENSMUSG00000002319.17	Ipo4	chr14	protein_coding	importin 4
known_NIR_5668	chr14	55875527	55877842	-	55875589	55877842	A3SS	ENSMUST00000120041.8	known	0.00	0	176	0	176	n	0.00	0	176	0	176	n	0.00	0	277	0	277	n	0.01	2	159	2	159	y	0.00	0	246	0	246	n	0.00	0	179	0	179	n	0.00	0	261	0	261	n	0.00	0	152	0	152	n	0.00	0	142	0	142	n	0.01	3	232	3	232	y	0.02	3	165	3	165	y	0.00	0	172	0	172	n	ENSMUSG00000002320.16	Tm9sf1	chr14	protein_coding	transmembrane 9 superfamily member 1
known_NIR_5669	chr14	55875962	55877842	-	55875589	55877842	A3SS	ENSMUST00000120041.8	known	0.01	1	176	1	176	n	0.02	3	176	3	176	y	0.01	3	277	3	277	y	0.00	0	159	0	159	n	0.01	3	246	3	246	y	0.02	4	179	4	179	y	0.00	1	261	1	261	n	0.02	3	152	3	152	y	0.02	3	142	3	142	y	0.01	2	232	2	232	y	0.02	4	165	4	165	y	0.01	1	172	1	172	n	ENSMUSG00000002320.16	Tm9sf1	chr14	protein_coding	transmembrane 9 superfamily member 1
known_NIR_5670	chr14	55878027	55878727	-	55878027	55878424	A5SS	ENSMUST00000120041.8	known	0.00	0	181	0	181	n	0.00	0	158	0	158	n	0.01	4	301	4	301	y	0.00	0	170	0	170	n	0.01	2	258	2	258	y	0.00	0	179	0	179	n	0.00	0	207	0	207	n	0.00	0	153	0	153	n	0.02	3	172	3	172	y	0.00	0	214	0	214	n	0.00	0	156	0	156	n	0.02	4	192	4	192	y	ENSMUSG00000002320.16	Tm9sf1	chr14	protein_coding	transmembrane 9 superfamily member 1
known_NIR_5671	chr14	55880412	55880587	-	55880412	55880637	A5SS	ENSMUST00000120041.8	known	0.50	5	5	5	5	y	0.29	2	5	2	5	n	0.23	5	17	5	17	y	0.17	4	20	4	20	y	0.38	13	21	13	21	y	0.14	3	19	3	19	y	0.35	7	13	7	13	y	0.30	7	16	7	16	y	0.25	3	9	3	9	y	0.15	2	11	2	11	y	0.50	3	3	3	3	n	0.12	1	7	1	7	n	ENSMUSG00000002320.16	Tm9sf1	chr14	protein_coding	transmembrane 9 superfamily member 1
known_NIR_5672	chr14	55880412	55880587	-	55880412	55880839	A5SS	ENSMUST00000122358.8	known	0.50	5	5	5	5	y	0.25	2	6	2	6	n	0.23	5	17	5	17	y	0.36	4	7	4	7	y	0.54	13	11	13	11	y	0.38	3	5	3	5	n	0.47	7	8	7	8	y	0.50	7	7	7	7	y	0.50	3	3	3	3	n	0.22	2	7	2	7	n	0.25	3	9	3	9	y	0.11	1	8	1	8	n	ENSMUSG00000002320.16	Tm9sf1	chr14	protein_coding	transmembrane 9 superfamily member 1
known_NIR_5673	chr14	55880412	55880587	-	55880412	55881054	A5SS	ENSMUST00000138085.2	known	0.36	5	9	5	9	y	0.33	2	4	2	4	n	0.25	5	15	5	15	y	0.44	4	5	4	5	n	0.59	13	9	13	9	y	0.25	3	9	3	9	y	0.47	7	8	7	8	y	0.54	7	6	7	6	y	0.60	3	2	3	2	n	0.40	2	3	2	3	n	0.60	3	2	3	2	n	0.14	1	6	1	6	n	ENSMUSG00000002320.16	Tm9sf1	chr14	protein_coding	transmembrane 9 superfamily member 1
known_NIR_5674	chr14	55880412	55880709	-	55880412	55880637	A5SS&ES	ENSMUST00000120041.8	known	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	17	0	17	n	0.09	2	20	2	20	y	0.05	1	21	1	21	n	0.00	0	19	0	19	n	0.00	0	13	0	13	n	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	ENSMUSG00000002320.16	Tm9sf1	chr14	protein_coding	transmembrane 9 superfamily member 1
known_NIR_5675	chr14	55880412	55880839	-	55880412	55880637	5pMXE	ENSMUST00000120041.8	known	0.50	5	5	5	5	y	0.55	6	5	6	5	y	0.50	17	17	17	17	y	0.26	7	20	7	20	y	0.34	11	21	11	21	y	0.21	5	19	5	19	y	0.38	8	13	8	13	y	0.30	7	16	7	16	y	0.25	3	9	3	9	y	0.39	7	11	7	11	y	0.75	9	3	9	3	y	0.53	8	7	8	7	y	ENSMUSG00000002320.16	Tm9sf1	chr14	protein_coding	transmembrane 9 superfamily member 1
known_NIR_5676	chr14	55880412	55881054	-	55880412	55880637	5pMXE	ENSMUST00000120041.8	known	0.64	9	5	9	5	y	0.44	4	5	4	5	n	0.47	15	17	15	17	y	0.20	5	20	5	20	y	0.30	9	21	9	21	y	0.32	9	19	9	19	y	0.38	8	13	8	13	y	0.27	6	16	6	16	y	0.18	2	9	2	9	y	0.21	3	11	3	11	y	0.40	2	3	2	3	n	0.46	6	7	6	7	y	ENSMUSG00000002320.16	Tm9sf1	chr14	protein_coding	transmembrane 9 superfamily member 1
known_NIR_5677	chr14	55880412	55881054	-	55880412	55880839	A5SS	ENSMUST00000122358.8	known	0.64	9	5	9	5	y	0.40	4	6	4	6	y	0.47	15	17	15	17	y	0.42	5	7	5	7	y	0.45	9	11	9	11	y	0.64	9	5	9	5	y	0.50	8	8	8	8	y	0.46	6	7	6	7	y	0.40	2	3	2	3	n	0.30	3	7	3	7	y	0.18	2	9	2	9	y	0.43	6	8	6	8	y	ENSMUSG00000002320.16	Tm9sf1	chr14	protein_coding	transmembrane 9 superfamily member 1
known_NIR_5678	chr14	55901378	55909252	-	55901316	55909252	A3SS	ENSMUST00000010520.10	known	0.01	6	431	6	431	y	0.02	8	508	8	508	y	0.01	5	468	5	468	y	0.03	12	426	12	426	y	0.03	12	438	12	438	y	0.02	5	261	5	261	y	0.02	11	476	11	476	y	0.02	6	254	6	254	y	0.02	7	391	7	391	y	0.04	19	500	19	500	y	0.02	10	433	10	433	y	0.01	5	447	5	447	y	ENSMUSG00000010376.16	Nedd8	chr14	protein_coding	neural precursor cell expressed, developmentally down-regulated gene 8
known_NIR_5679	chr14	55909949	55910163	+	55909841	55910163	A5SS	ENSMUST00000226735.2	known	0.13	3	20	3	20	y	0.17	4	20	4	20	y	0.22	5	18	5	18	y	0.17	5	25	5	25	y	0.25	8	24	8	24	y	0.15	2	11	2	11	y	0.16	4	21	4	21	y	0.19	3	13	3	13	y	0.00	0	22	0	22	n	0.27	7	19	7	19	y	0.18	5	23	5	23	y	0.07	2	26	2	26	y	ENSMUSG00000002326.7	Gmpr2	chr14	protein_coding	guanosine monophosphate reductase 2
known_NIR_5680	chr14	55916866	55916971	-	55914738	55916971	A3SS	ENSMUST00000227842.2	known	1.00	56	0	56	0	n	1.00	58	0	58	0	n	0.99	93	1	93	1	n	0.96	43	2	43	2	y	1.00	63	0	63	0	n	1.00	16	0	16	0	n	1.00	82	0	82	0	n	1.00	20	0	20	0	n	1.00	47	0	47	0	n	1.00	79	0	79	0	n	1.00	62	0	62	0	n	0.99	70	1	70	1	n	ENSMUSG00000007589.10	Tinf2	chr14	protein_coding	Terf1 (TRF1)-interacting nuclear factor 2
known_NIR_5681	chr14	55950211	55950392	-	55950211	55950745	A5SS	ENSMUST00000168729.8	known	0.50	4	4	4	4	n	0.29	2	5	2	5	n	0.40	4	6	4	6	y	0.62	5	3	5	3	n	0.72	13	5	13	5	y	1.00	5	0	5	0	n	0.56	5	4	5	4	n	0.00	0	6	0	6	n	0.55	6	5	6	5	y	0.60	3	2	3	2	n	0.43	3	4	3	4	n	0.75	6	2	6	2	n	ENSMUSG00000022218.17	Tgm1	chr14	protein_coding	transglutaminase 1, K polypeptide
known_NIR_5682	chr14	55950211	55950844	-	55950211	55950392	5pMXE	ENSMUST00000002389.9	known	0.71	10	4	10	4	y	0.90	19	2	19	2	y	0.85	22	4	22	4	y	0.86	32	5	32	5	y	0.75	38	13	38	13	y	0.69	11	5	11	5	y	0.77	17	5	17	5	y	1.00	16	0	16	0	n	0.50	6	6	6	6	y	0.87	20	3	20	3	y	0.81	13	3	13	3	y	0.76	19	6	19	6	y	ENSMUSG00000022218.17	Tgm1	chr14	protein_coding	transglutaminase 1, K polypeptide
known_NIR_5683	chr14	55950211	55950844	-	55950211	55950745	A5SS	ENSMUST00000168729.8	known	0.71	10	4	10	4	y	0.79	19	5	19	5	y	0.79	22	6	22	6	y	0.91	32	3	32	3	y	0.88	38	5	38	5	y	1.00	11	0	11	0	n	0.81	17	4	17	4	y	0.73	16	6	16	6	y	0.55	6	5	6	5	y	0.91	20	2	20	2	y	0.76	13	4	13	4	y	0.90	19	2	19	2	y	ENSMUSG00000022218.17	Tgm1	chr14	protein_coding	transglutaminase 1, K polypeptide
known_NIR_5684	chr14	55959357	55959658	-	55959357	55959510	A5SS	ENSMUST00000227061.2	known	0.59	17	12	17	12	y	0.43	6	8	6	8	y	0.82	14	3	14	3	y	0.46	12	14	12	14	y	0.32	12	26	12	26	y	0.33	4	8	4	8	y	0.30	6	14	6	14	y	0.25	3	9	3	9	y	0.31	5	11	5	11	y	0.38	11	18	11	18	y	0.37	7	12	7	12	y	0.42	10	14	10	14	y	ENSMUSG00000040472.16	Rabggta	chr14	protein_coding	Rab geranylgeranyl transferase, a subunit
known_NIR_5685	chr14	56125474;56126055	56126006;56131449	+	56125474	56131449	cassetteExon	ENSMUST00000022831.5	known	0.00	0.0	20	0;0	20	n	0.16	2.5	13	4;1	13	n	0.05	1.5	30	2;1	30	n	0.03	1.0	39	0;2	39	n	0.00	0.0	42	0;0	42	n	0.05	0.5	10	1;0	10	n	0.00	0.0	34	0;0	34	n	0.04	1.0	22	2;0	22	n	0.05	2.0	40	2;2	40	y	0.02	1.0	41	1;1	41	n	0.10	3.5	32	4;3	32	y	0.02	1.0	46	1;1	46	n	ENSMUSG00000047153.5	Khnyn	chr14	protein_coding	KH and NYN domain containing
known_NIR_5686	chr14	56131616	56131744	+	56131556	56131744	A5SS	ENSMUST00000022831.5	known	0.09	2	20	2	20	y	0.00	0	21	0	21	n	0.24	9	28	9	28	y	0.20	9	35	9	35	y	0.27	11	30	11	30	y	0.18	2	9	2	9	y	0.09	3	31	3	31	y	0.11	4	31	4	31	y	0.10	5	44	5	44	y	0.19	10	43	10	43	y	0.14	5	30	5	30	y	0.16	9	46	9	46	y	ENSMUSG00000047153.5	Khnyn	chr14	protein_coding	KH and NYN domain containing
known_NIR_5687	chr14	56135469	56136641	-	56135469;56135843	56135700;56136641	ES	ENSMUST00000111325.5	known	0.00	0	29.0	0	21;37	n	0.00	0	24.0	0	22;26	n	0.03	2	58.0	2	56;60	y	0.00	0	25.0	0	19;31	n	0.00	0	51.0	0	56;46	n	0.00	0	42.0	0	43;41	n	0.07	4	57.0	4	46;68	y	0.03	1	29.0	1	24;34	n	0.00	0	25.5	0	24;27	n	0.00	0	46.0	0	33;59	n	0.00	0	32.0	0	35;29	n	0.00	0	29.5	0	30;29	n	ENSMUSG00000022223.10	Sdr39u1	chr14	protein_coding	short chain dehydrogenase/reductase family 39U, member 1
known_NIR_5688	chr14	56135469	56136641	-	56135469;56135934	56135700;56136641	ES	ENSMUST00000227032.2	known	0.00	0	12.0	0	21;3	n	0.00	0	13.5	0	22;5	n	0.06	2	32.0	2	56;8	y	0.00	0	11.5	0	19;4	n	0.00	0	31.0	0	56;6	n	0.00	0	22.5	0	43;2	n	0.14	4	25.5	4	46;5	y	0.07	1	13.0	1	24;2	n	0.00	0	13.0	0	24;2	n	0.00	0	19.0	0	33;5	n	0.00	0	19.0	0	35;3	n	0.00	0	15.0	0	30;0	n	ENSMUSG00000022223.10	Sdr39u1	chr14	protein_coding	short chain dehydrogenase/reductase family 39U, member 1
known_NIR_5689	chr14	56135469	56136641	-	56135843	56136641	A3SS&ES	ENSMUST00000227211.2	known	0.00	0	37	0	37	n	0.00	0	26	0	26	n	0.03	2	60	2	60	y	0.00	0	31	0	31	n	0.00	0	46	0	46	n	0.00	0	41	0	41	n	0.06	4	68	4	68	y	0.03	1	34	1	34	n	0.00	0	27	0	27	n	0.00	0	59	0	59	n	0.00	0	29	0	29	n	0.00	0	29	0	29	n	ENSMUSG00000022223.10	Sdr39u1	chr14	protein_coding	short chain dehydrogenase/reductase family 39U, member 1
known_NIR_5690	chr14	56135469	56136641	-	56135934	56136641	3pMXE	ENSMUST00000227965.2	known	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.20	2	8	2	8	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.44	4	5	4	5	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000022223.10	Sdr39u1	chr14	protein_coding	short chain dehydrogenase/reductase family 39U, member 1
known_NIR_5691	chr14	56135934	56136641	-	56135843	56136641	A3SS	ENSMUST00000227211.2	known	0.07	3	37	3	37	y	0.16	5	26	5	26	y	0.12	8	60	8	60	y	0.11	4	31	4	31	y	0.12	6	46	6	46	y	0.05	2	41	2	41	y	0.07	5	68	5	68	y	0.06	2	34	2	34	y	0.07	2	27	2	27	y	0.08	5	59	5	59	y	0.09	3	29	3	29	y	0.00	0	29	0	29	n	ENSMUSG00000022223.10	Sdr39u1	chr14	protein_coding	short chain dehydrogenase/reductase family 39U, member 1
known_NIR_5692	chr14	56136762	56137271	-	56136762	56137104	A5SS	ENSMUST00000226338.2	known	0.03	1	31	1	31	n	0.00	0	29	0	29	n	0.01	1	70	1	70	n	0.06	2	34	2	34	y	0.05	4	73	4	73	y	0.09	4	42	4	42	y	0.07	6	86	6	86	y	0.00	0	34	0	34	n	0.05	2	38	2	38	y	0.09	4	42	4	42	y	0.04	1	25	1	25	n	0.00	0	38	0	38	n	ENSMUSG00000022223.10	Sdr39u1	chr14	protein_coding	short chain dehydrogenase/reductase family 39U, member 1
known_NIR_5693	chr14	56136762	56137271	-	56136762;56137186	56137104;56137271	ES	ENSMUST00000227211.2	known	0.03	1	32.0	1	31;33	n	0.00	0	33.0	0	29;37	n	0.01	1	69.5	1	70;69	n	0.06	2	29.5	2	34;25	y	0.05	4	70.0	4	73;67	y	0.09	4	40.5	4	42;39	y	0.07	6	74.5	6	86;63	y	0.00	0	29.5	0	34;25	n	0.06	2	33.0	2	38;28	y	0.09	4	42.0	4	42;42	y	0.04	1	23.5	1	25;22	n	0.00	0	33.5	0	38;29	n	ENSMUSG00000022223.10	Sdr39u1	chr14	protein_coding	short chain dehydrogenase/reductase family 39U, member 1
known_NIR_5694	chr14	56848794	56851142	-	56848794;56849196	56849130;56851142	ES	ENSMUST00000160334.8	known	0.89	44	5.5	44	4;7	y	0.79	24	6.5	24	5;8	y	0.62	18	11.0	18	12;10	y	0.77	31	9.5	31	8;11	y	0.77	68	20.0	68	21;19	y	0.74	28	10.0	28	12;8	y	0.78	48	13.5	48	15;12	y	0.81	59	14.0	59	14;14	y	0.89	29	3.5	29	3;4	y	0.82	30	6.5	30	7;6	y	0.87	29	4.5	29	4;5	y	0.80	37	9.0	37	9;9	y	ENSMUSG00000090038.8	Gm16573	chr14	lncRNA	predicted gene 16573
known_NIR_5695	chr14	56855095	56857811	-	56851238	56857811	A3SS	ENSMUST00000160334.8	known	0.54	73	61	73	61	y	0.71	73	30	73	30	y	0.74	65	23	65	23	y	0.48	59	64	59	64	y	0.51	100	97	100	97	y	0.70	135	58	135	58	y	0.59	116	80	116	80	y	0.55	114	95	114	95	y	0.61	43	27	43	27	y	0.61	68	43	68	43	y	0.64	48	27	48	27	y	0.67	70	35	70	35	y	ENSMUSG00000090038.8	Gm16573	chr14	lncRNA	predicted gene 16573
known_NIR_5696	chr14	57001701	57015248	-	57001701;57009463	57009162;57015248	ES	ENSMUST00000022507.13	known	0.00	0	9.0	0	5;13	n	0.00	0	7.5	0	6;9	n	0.00	0	32.5	0	28;37	n	0.25	2	6.0	2	4;8	y	0.00	0	13.0	0	13;13	n	0.00	0	12.5	0	11;14	n	0.00	0	15.5	0	13;18	n	0.00	0	11.0	0	10;12	n	0.00	0	10.0	0	8;12	n	0.00	0	16.0	0	20;12	n	0.00	0	10.0	0	5;15	n	0.00	0	13.5	0	14;13	n	ENSMUSG00000021938.13	Pspc1	chr14	protein_coding	paraspeckle protein 1
known_NIR_5697	chr14	57034267	57035142	-	57034267	57035125	A5SS	ENSMUST00000039812.16	known	0.00	0	22	0	22	n	0.05	2	40	2	40	y	0.07	3	42	3	42	y	0.00	0	61	0	61	n	0.00	0	48	0	48	n	0.00	0	25	0	25	n	0.00	0	55	0	55	n	0.00	0	27	0	27	n	0.00	0	54	0	54	n	0.00	0	50	0	50	n	0.04	2	46	2	46	y	0.00	0	66	0	66	n	ENSMUSG00000040123.18	Zmym5	chr14	protein_coding	zinc finger, MYM-type 5
known_NIR_5698	chr14	57187785	57193683	+	57187785	57193637	A3SS	ENSMUST00000022511.10	known	0.02	1	47	1	47	n	0.00	0	34	0	34	n	0.12	10	71	10	71	y	0.03	1	37	1	37	n	0.01	1	67	1	67	n	0.00	0	25	0	25	n	0.04	2	52	2	52	y	0.08	2	22	2	22	y	0.07	2	27	2	27	y	0.02	1	62	1	62	n	0.09	3	31	3	31	y	0.05	2	40	2	40	y	ENSMUSG00000021945.10	Zmym2	chr14	protein_coding	zinc finger, MYM-type 2
known_NIR_5699	chr14	57550586;57590197	57590093;57600379	-	57550586	57600379	cassetteExon	ENSMUST00000022517.9	known	0.00	0.0	39	0;0	39	n	0.00	0.0	33	0;0	33	n	0.10	2.0	18	2;2	18	y	0.00	0.0	49	0;0	49	n	0.00	0.0	34	0;0	34	n	0.00	0.0	3	0;0	3	n	0.00	0.0	30	0;0	30	n	0.00	0.0	9	0;0	9	n	0.02	0.5	31	1;0	31	n	0.00	0.0	63	0;0	63	n	0.00	0.0	43	0;0	43	n	0.03	2.0	65	1;3	65	n	ENSMUSG00000021947.12	Cryl1	chr14	protein_coding	crystallin, lambda 1
known_NIR_5700	chr14	57579655	57600379	-	57550586	57600379	A3SS	ENSMUST00000022517.9	known	0.03	1	39	1	39	n	0.00	0	33	0	33	n	0.00	0	18	0	18	n	0.00	0	49	0	49	n	0.08	3	34	3	34	y	0.00	0	3	0	3	n	0.03	1	30	1	30	n	0.00	0	9	0	9	n	0.00	0	31	0	31	n	0.09	6	63	6	63	y	0.07	3	43	3	43	y	0.12	9	65	9	65	y	ENSMUSG00000021947.12	Cryl1	chr14	protein_coding	crystallin, lambda 1
known_NIR_5701	chr14	57579655	57600379	-	57590197	57600379	A3SS&ES	ENSMUST00000223986.2	known	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	3	0	3	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	n	1.00	3	0	3	0	n	0.75	9	3	9	3	y	ENSMUSG00000021947.12	Cryl1	chr14	protein_coding	crystallin, lambda 1
known_NIR_5702	chr14	57672314	57674634	+	57672314	57674684	A3SS	ENSMUST00000122063.8	known	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.12	1	7	1	7	n	0.17	2	10	2	10	y	0.10	1	9	1	9	n	0.14	1	6	1	6	n	0.33	5	10	5	10	y	0.00	0	5	0	5	n	0.00	0	16	0	16	n	0.14	1	6	1	6	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000040040.17	Ift88	chr14	protein_coding	intraflagellar transport 88
known_NIR_5703	chr14	57880680;57880946	57880792;57885876	-	57880680	57885876	cassetteExon	ENSMUST00000174545.9	known	0.20	0.5	2	0;1	2	n	-	-	-	-	-	-	0.18	1.5	7	2;1	7	n	0.86	6.0	1	5;7	1	n	0.44	4.0	5	2;6	5	y	0.11	0.5	4	1;0	4	n	0.00	0.0	5	0;0	5	n	0.20	1.5	6	3;0	6	n	0.00	0.0	2	0;0	2	n	0.33	1.5	3	0;3	3	n	0.14	0.5	3	1;0	3	n	0.33	2.0	4	4;0	4	n	ENSMUSG00000021952.17	Xpo4	chr14	protein_coding	exportin 4
known_NIR_5704	chr14	57934955	57936754	-	57934955	57936715	A5SS	ENSMUST00000174694.8	known	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.03	1	30	1	30	n	0.05	1	21	1	21	n	0.06	2	30	2	30	y	0.12	2	15	2	15	y	0.00	0	14	0	14	n	0.00	0	14	0	14	n	0.00	0	19	0	19	n	0.00	0	32	0	32	n	0.00	0	8	0	8	n	0.00	0	15	0	15	n	ENSMUSG00000114942.2	Gm49361	chr14	protein_coding	predicted gene, 49361
known_NIR_5705	chr14	57960008	57971335	-	57940511	57971335	A3SS	ENSMUST00000174694.8	known	0.10	1	9	1	9	n	0.33	3	6	3	6	n	0.15	4	22	4	22	y	0.14	2	12	2	12	y	0.05	1	18	1	18	n	0.00	0	7	0	7	n	0.25	4	12	4	12	y	0.15	2	11	2	11	y	0.22	2	7	2	7	n	0.14	3	18	3	18	y	0.33	2	4	2	4	n	0.00	0	16	0	16	n	ENSMUSG00000114942.2	Gm49361	chr14	protein_coding	predicted gene, 49361
known_NIR_5706	chr14	58036054	58042215	+	58036054	58038951	A3SS&ES	ENSMUST00000128764.9	known	0.00	1	455	1	455	n	0.00	2	482	2	482	y	0.00	2	518	2	518	y	0.00	0	463	0	463	n	0.00	1	533	1	533	n	0.00	1	321	1	321	n	0.00	0	589	0	589	n	0.00	0	326	0	326	n	0.00	0	356	0	356	n	0.01	3	569	3	569	y	0.00	1	458	1	458	n	0.00	0	524	0	524	n	ENSMUSG00000021963.18	Sap18	chr14	protein_coding	Sin3-associated polypeptide 18
known_NIR_5707	chr14	58074103	58076547	-	58074103;58075124	58075048;58076547	ES	ENSMUST00000089473.5	known	0.13	2	13.0	2	12;14	y	0.09	2	19.5	2	17;22	y	0.15	5	28.5	5	30;27	y	0.22	4	14.0	4	15;13	y	0.12	4	30.0	4	31;29	y	0.09	2	19.5	2	21;18	y	0.22	6	21.0	6	19;23	y	0.15	3	17.5	3	18;17	y	0.00	0	23.5	0	27;20	n	0.03	1	28.0	1	31;25	n	0.00	0	20.5	0	18;23	n	0.07	2	26.5	2	26;27	y	ENSMUSG00000021969.9	Zdhhc20	chr14	protein_coding	zinc finger, DHHC domain containing 20
known_NIR_5708	chr14	59439033	59443074	+	59439033	59447374	A3SS	ENSMUST00000043227.13	known	0.14	3	18	3	18	y	0.17	4	20	4	20	y	0.15	12	67	12	67	y	0.23	16	55	16	55	y	0.23	17	56	17	56	y	0.29	7	17	7	17	y	0.17	9	43	9	43	y	0.27	13	36	13	36	y	0.33	8	16	8	16	y	0.14	10	64	10	64	y	0.32	6	13	6	13	y	0.40	21	31	21	31	y	ENSMUSG00000035469.18	Rcbtb1	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
known_NIR_5709	chr14	59439033	59447192	+	59439033	59443074	A3SS&ES	ENSMUST00000174009.8	known	0.00	0	3	0	3	n	0.43	3	4	3	4	n	0.29	5	12	5	12	y	0.00	0	16	0	16	n	0.15	3	17	3	17	y	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	21	0	21	n	ENSMUSG00000035469.18	Rcbtb1	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
known_NIR_5710	chr14	59439033;59447259	59447192;59447374	+	59439033	59447374	cassetteExon	ENSMUST00000043227.13	known	0.08	1.5	18	0;3	18	n	0.09	2.0	20	3;1	20	n	0.05	3.5	67	5;2	67	y	0.00	0.0	55	0;0	55	n	0.05	3.0	56	3;3	56	y	0.00	0.0	17	0;0	17	n	0.01	0.5	43	0;1	43	n	0.00	0.0	36	0;0	36	n	0.00	0.0	16	0;0	16	n	0.02	1.0	64	0;2	64	n	0.04	0.5	13	0;1	13	n	0.02	0.5	31	0;1	31	n	ENSMUSG00000035469.18	Rcbtb1	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
known_NIR_5711	chr14	59439033;59447259	59447192;59447374	+	59439033;59444379	59443074;59447374	MXE	ENSMUST00000140136.9	known	0.25	1.5	4.5	0;3	3;6	n	0.31	2.0	4.5	3;1	4;5	n	0.24	3.5	11.0	5;2	12;10	y	0.00	0.0	10.0	0;0	16;4	n	0.19	3.0	13.0	3;3	17;9	y	0.00	0.0	4.5	0;0	7;2	n	0.04	0.5	11.0	0;1	9;13	n	0.00	0.0	8.5	0;0	13;4	n	0.00	0.0	5.0	0;0	8;2	n	0.09	1.0	10.0	0;2	10;10	n	0.09	0.5	5.0	0;1	6;4	n	0.03	0.5	16.5	0;1	21;12	n	ENSMUSG00000035469.18	Rcbtb1	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
known_NIR_5712	chr14	59443171	59444253	+	59443171	59447466	A3SS	ENSMUST00000174009.8	known	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	n	1.00	5	0	5	0	n	0.89	8	1	8	1	n	0.67	2	1	2	1	n	0.88	7	1	7	1	n	1.00	4	0	4	0	n	0.00	0	1	0	1	n	1.00	5	0	5	0	n	-	-	-	-	-	-	0.73	8	3	8	3	y	ENSMUSG00000035469.18	Rcbtb1	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
known_NIR_5713	chr14	59444379	59447374	+	59439033	59447374	A5SS	ENSMUST00000043227.13	known	0.25	6	18	6	18	y	0.20	5	20	5	20	y	0.13	10	67	10	67	y	0.07	4	55	4	55	y	0.14	9	56	9	56	y	0.11	2	17	2	17	y	0.23	13	43	13	43	y	0.10	4	36	4	36	y	0.11	2	16	2	16	y	0.14	10	64	10	64	y	0.24	4	13	4	13	y	0.28	12	31	12	31	y	ENSMUSG00000035469.18	Rcbtb1	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
known_NIR_5714	chr14	59444379	59447374	+	59447259	59447374	A5SS&ES	ENSMUST00000022551.14	known	0.67	6	3	6	3	n	0.83	5	1	5	1	n	0.83	10	2	10	2	y	1.00	4	0	4	0	n	0.75	9	3	9	3	y	1.00	2	0	2	0	n	0.93	13	1	13	1	n	1.00	4	0	4	0	n	1.00	2	0	2	0	n	0.83	10	2	10	2	y	0.80	4	1	4	1	n	0.92	12	1	12	1	n	ENSMUSG00000035469.18	Rcbtb1	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
known_NIR_5715	chr14	59444379	59447377	+	59444379	59447374	A3SS	ENSMUST00000140136.9	known	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.17	2	10	2	10	y	0.20	1	4	1	4	n	0.18	2	9	2	9	y	0.33	1	2	1	2	n	0.00	0	13	0	13	n	0.20	1	4	1	4	n	0.50	2	2	2	2	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	ENSMUSG00000035469.18	Rcbtb1	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
known_NIR_5716	chr14	59454114	59455045	+	59448034	59455045	A5SS	ENSMUST00000173547.8	known	0.00	0	45	0	45	n	0.00	0	33	0	33	n	0.00	0	98	0	98	n	0.00	0	105	0	105	n	0.01	1	77	1	77	n	0.00	0	55	0	55	n	0.00	0	84	0	84	n	0.04	2	50	2	50	y	0.00	0	58	0	58	n	0.00	0	109	0	109	n	0.02	1	44	1	44	n	0.00	0	89	0	89	n	ENSMUSG00000035469.18	Rcbtb1	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
known_NIR_5717	chr14	59455211	59459067	+	59455211	59458866	A3SS&ES	ENSMUST00000173547.8	known	0.08	5	54	5	54	y	0.06	3	44	3	44	y	0.03	3	106	3	106	y	0.03	4	111	4	111	y	0.00	0	107	0	107	n	0.00	0	48	0	48	n	0.01	1	76	1	76	n	0.00	0	72	0	72	n	0.06	4	58	4	58	y	0.00	0	124	0	124	n	0.00	0	59	0	59	n	0.03	4	117	4	117	y	ENSMUSG00000035469.18	Rcbtb1	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
known_NIR_5718	chr14	59590231	59590767	-	59586837	59590767	A3SS	ENSMUST00000160425.8	known	1.00	2	0	2	0	n	1.00	6	0	6	0	n	1.00	15	0	15	0	n	0.89	8	1	8	1	n	1.00	5	0	5	0	n	1.00	3	0	3	0	n	1.00	8	0	8	0	n	1.00	3	0	3	0	n	1.00	3	0	3	0	n	0.83	10	2	10	2	y	-	-	-	-	-	-	1.00	7	0	7	0	n	ENSMUSG00000068245.15	Phf11d	chr14	protein_coding	PHD finger protein 11D
known_NIR_5719	chr14	59668717	59678036	-	59668717;59675214	59674886;59678036	ES	ENSMUST00000161459.8	known	0.21	3	11.5	3	11;12	y	0.15	2	11.0	2	14;8	y	0.00	0	30.5	0	35;26	n	0.00	0	30.5	0	27;34	n	0.04	1	24.0	1	25;23	n	0.07	1	12.5	1	11;14	n	0.00	0	25.5	0	27;24	n	0.00	0	14.5	0	13;16	n	0.00	0	28.5	0	29;28	n	0.04	1	27.0	1	31;23	n	0.05	1	17.5	1	14;21	n	0.09	3	29.0	3	33;25	y	ENSMUSG00000071350.13	Setdb2	chr14	protein_coding	SET domain, bifurcated 2
known_NIR_5720	chr14	59699151	59715481	+	59699151	59734252	A3SS	ENSMUST00000224281.2	known	0.00	0	98	0	98	n	0.00	0	56	0	56	n	0.03	2	56	2	56	y	0.02	3	125	3	125	y	0.00	0	100	0	100	n	0.04	2	51	2	51	y	0.02	2	117	2	117	y	0.01	1	66	1	66	n	0.05	4	79	4	79	y	0.03	4	125	4	125	y	0.01	1	84	1	84	n	0.00	0	107	0	107	n	ENSMUSG00000021981.11	Cab39l	chr14	protein_coding	calcium binding protein 39-like
known_NIR_5721	chr14	59716633	59734252	+	59699151	59734252	A5SS	ENSMUST00000224281.2	known	0.00	0	98	0	98	n	0.00	0	56	0	56	n	0.00	0	56	0	56	n	0.00	0	125	0	125	n	0.00	0	100	0	100	n	0.00	0	51	0	51	n	0.01	1	117	1	117	n	0.00	0	66	0	66	n	0.02	2	79	2	79	y	0.02	2	125	2	125	y	0.00	0	84	0	84	n	0.00	0	107	0	107	n	ENSMUSG00000021981.11	Cab39l	chr14	protein_coding	calcium binding protein 39-like
known_NIR_5722	chr14	59798370	59806397	-	59802044	59806397	3pMXE	ENSMUST00000056997.15	known	0.02	2	101	2	101	y	0.00	0	109	0	109	n	0.00	0	56	0	56	n	0.00	0	127	0	127	n	0.02	2	128	2	128	y	0.00	0	41	0	41	n	0.02	3	156	3	156	y	0.00	0	45	0	45	n	0.03	3	103	3	103	y	0.00	0	181	0	181	n	0.03	3	110	3	110	y	0.02	2	127	2	127	y	ENSMUSG00000021982.15	Cdadc1	chr14	protein_coding	cytidine and dCMP deaminase domain containing 1
known_NIR_5723	chr14	59805487	59806397	-	59798370	59806397	A3SS	ENSMUST00000022555.11	known	0.82	9	2	9	2	y	1.00	3	0	3	0	n	1.00	9	0	9	0	n	1.00	12	0	12	0	n	0.71	5	2	5	2	n	1.00	1	0	1	0	n	0.70	7	3	7	3	y	1.00	4	0	4	0	n	0.67	6	3	6	3	n	1.00	10	0	10	0	n	0.79	11	3	11	3	y	0.78	7	2	7	2	n	ENSMUSG00000021982.15	Cdadc1	chr14	protein_coding	cytidine and dCMP deaminase domain containing 1
known_NIR_5724	chr14	59805487	59806397	-	59802044	59806397	A3SS	ENSMUST00000225839.2	known	0.08	9	101	9	101	y	0.03	3	109	3	109	y	0.14	9	56	9	56	y	0.09	12	127	12	127	y	0.04	5	128	5	128	y	0.02	1	41	1	41	n	0.04	7	156	7	156	y	0.08	4	45	4	45	y	0.06	6	103	6	103	y	0.05	10	181	10	181	y	0.09	11	110	11	110	y	0.05	7	127	7	127	y	ENSMUSG00000021982.15	Cdadc1	chr14	protein_coding	cytidine and dCMP deaminase domain containing 1
known_NIR_5725	chr14	59834408	59835236	-	59834408	59835204	A5SS	ENSMUST00000225839.2	known	0.05	5	97	5	97	y	0.00	0	66	0	66	n	0.00	0	81	0	81	n	0.00	0	147	0	147	n	0.04	6	144	6	144	y	0.06	3	51	3	51	y	0.02	3	145	3	145	y	0.03	2	68	2	68	y	0.02	2	91	2	91	y	0.04	6	162	6	162	y	0.03	3	112	3	112	y	0.05	7	140	7	140	y	ENSMUSG00000021982.15	Cdadc1	chr14	protein_coding	cytidine and dCMP deaminase domain containing 1
known_NIR_5726	chr14	6053206	6056007	-	6053206;6055861	6055770;6056007	ES	ENSMUST00000017629.12	known	0.02	1	44.5	1	47;42	n	0.00	0	38.5	0	37;40	n	0.09	4	42.5	4	42;43	y	0.03	2	74.0	2	76;72	y	0.02	1	57.5	1	54;61	n	0.00	0	18.5	0	20;17	n	0.10	7	66.0	7	70;62	y	0.07	2	28.0	2	22;34	y	0.05	2	40.5	2	48;33	y	0.00	0	60.5	0	60;61	n	0.08	4	44.5	4	46;43	y	0.02	2	81.5	2	84;79	y	ENSMUSG00000017485.12	Top2b	chr14	protein_coding	topoisomerase (DNA) II beta
known_NIR_5727	chr14	60872313;60874095	60873817;60928303	+	60872313	60928303	cassetteExon	ENSMUST00000022566.14	known	1.00	8.0	0	9;7	0	n	0.60	3.0	2	4;2	2	n	0.64	7.0	4	4;10	4	y	0.44	11.0	14	14;8	14	y	0.33	7.0	14	5;9	14	y	0.48	5.5	6	6;5	6	y	0.37	3.5	6	3;4	6	y	0.54	3.5	3	5;2	3	y	0.52	6.5	6	5;8	6	y	0.46	9.5	11	8;11	11	y	0.57	4.0	3	4;4	3	y	1.00	10.5	0	7;14	0	n	ENSMUSG00000021990.17	Spata13	chr14	protein_coding	spermatogenesis associated 13
known_NIR_5728	chr14	60944498	60946874	+	60944528	60946874	A5SS	ENSMUST00000160973.8	known	0.33	3	6	3	6	n	0.83	5	1	5	1	n	0.65	11	6	11	6	y	0.23	6	20	6	20	y	0.32	9	19	9	19	y	0.58	7	5	7	5	y	0.42	8	11	8	11	y	0.37	7	12	7	12	y	0.27	3	8	3	8	y	0.38	9	15	9	15	y	0.27	3	8	3	8	y	0.21	4	15	4	15	y	ENSMUSG00000021990.17	Spata13	chr14	protein_coding	spermatogenesis associated 13
known_NIR_5729	chr14	60970655	60983094	+	60947018	60983094	A5SS	ENSMUST00000160973.8	known	0.00	0	4	0	4	n	0.18	2	9	2	9	y	0.04	1	25	1	25	n	0.00	0	14	0	14	n	0.00	0	27	0	27	n	0.00	0	7	0	7	n	0.04	1	27	1	27	n	0.00	0	18	0	18	n	0.00	0	10	0	10	n	0.00	0	27	0	27	n	0.00	0	13	0	13	n	0.05	1	19	1	19	n	ENSMUSG00000021990.17	Spata13	chr14	protein_coding	spermatogenesis associated 13
known_NIR_5730	chr14	61579675	61597669	-	61579675;61584890	61584821;61597669	ES	ENSMUST00000022494.10	known	0.01	5	466.0	5	565;367	y	0.01	7	494.5	7	613;376	y	0.01	2	266.0	2	331;201	y	0.01	4	472.0	4	561;383	y	0.01	6	606.0	6	729;483	y	0.01	2	229.5	2	281;178	y	0.02	9	579.0	9	691;467	y	0.01	3	308.0	3	354;262	y	0.02	10	406.5	10	503;310	y	0.01	4	672.0	4	821;523	y	0.02	11	560.5	11	670;451	y	0.01	5	493.5	5	578;409	y	ENSMUSG00000021928.10	Ebpl	chr14	protein_coding	emopamil binding protein-like
known_NIR_5731	chr14	61579675	61597669	-	61584890	61597669	3pMXE	ENSMUST00000225112.2	known	0.01	5	367	5	367	y	0.02	7	376	7	376	y	0.01	2	201	2	201	y	0.01	4	383	4	383	y	0.01	6	483	6	483	y	0.01	2	178	2	178	y	0.02	9	467	9	467	y	0.01	3	262	3	262	y	0.03	10	310	10	310	y	0.01	4	523	4	523	y	0.02	11	451	11	451	y	0.01	5	409	5	409	y	ENSMUSG00000021928.10	Ebpl	chr14	protein_coding	emopamil binding protein-like
known_NIR_5732	chr14	61772690	61783131	-	61772690;61777688	61777586;61783131	ES	ENSMUST00000022497.15	known	0.06	6	95.5	6	91;100	y	0.08	7	86.0	7	94;78	y	0.06	9	140.0	9	134;146	y	0.05	5	91.5	5	89;94	y	0.07	10	132.5	10	124;141	y	0.07	6	82.0	6	87;77	y	0.07	10	142.5	10	147;138	y	0.08	6	68.0	6	69;67	y	0.08	6	70.0	6	75;65	y	0.07	10	143.0	10	130;156	y	0.07	8	100.5	8	102;99	y	0.09	9	90.0	9	97;83	y	ENSMUSG00000021930.15	Spryd7	chr14	protein_coding	SPRY domain containing 7
known_NIR_5733	chr14	61841255	61851615	-	61841255	61869886	A5SS	ENSMUST00000182768.8	known	0.00	0	19	0	19	n	0.00	0	23	0	23	n	0.00	0	3	0	3	n	0.00	0	17	0	17	n	0.06	1	17	1	17	n	0.17	1	5	1	5	n	0.00	0	19	0	19	n	0.17	1	5	1	5	n	0.00	0	15	0	15	n	0.15	4	23	4	23	y	0.00	0	10	0	10	n	0.08	2	23	2	23	y	ENSMUSG00000097589.10	Dleu2	chr14	lncRNA	deleted in lymphocytic leukemia, 2
known_NIR_5734	chr14	61841255	61872974	-	61841255;61869932	61869886;61872974	ES	ENSMUST00000182768.8	known	0.10	3	26.0	3	19;33	y	0.15	5	29.0	5	23;35	y	0.00	0	4.5	0	3;6	n	0.11	4	31.0	4	17;45	y	0.16	5	25.5	5	17;34	y	0.24	2	6.5	2	5;8	y	0.14	4	25.0	4	19;31	y	0.34	5	9.5	5	5;14	y	0.10	2	18.0	2	15;21	y	0.09	3	32.0	3	23;41	y	0.18	3	13.5	3	10;17	y	0.13	4	27.5	4	23;32	y	ENSMUSG00000097589.10	Dleu2	chr14	lncRNA	deleted in lymphocytic leukemia, 2
known_NIR_5735	chr14	61841255;61861931	61861882;61869886	-	61841255	61869886	cassetteExon	ENSMUST00000182768.8	known	0.05	1.0	19	1;1	19	n	0.02	0.5	23	0;1	23	n	0.25	1.0	3	2;0	3	n	0.15	3.0	17	1;5	17	n	0.19	4.0	17	2;6	17	y	0.00	0.0	5	0;0	5	n	0.12	2.5	19	3;2	19	y	0.38	3.0	5	2;4	5	y	0.17	3.0	15	1;5	15	n	0.13	3.5	23	4;3	23	y	0.23	3.0	10	4;2	10	y	0.16	4.5	23	5;4	23	y	ENSMUSG00000097589.10	Dleu2	chr14	lncRNA	deleted in lymphocytic leukemia, 2
known_NIR_5736	chr14	61841255;61861931	61861882;61869886	-	61841255;61862811	61851615;61869886	MXE	ENSMUST00000182259.8	known	0.40	1.0	1.5	1;1	0;3	n	0.33	0.5	1.0	0;1	0;2	n	1.00	1.0	0.0	2;0	0;0	n	0.55	3.0	2.5	1;5	0;5	n	0.80	4.0	1.0	2;6	1;1	n	0.00	0.0	0.5	0;0	1;0	n	0.71	2.5	1.0	3;2	0;2	n	0.75	3.0	1.0	2;4	1;1	n	0.60	3.0	2.0	1;5	0;4	n	0.41	3.5	5.0	4;3	4;6	y	0.67	3.0	1.5	4;2	0;3	n	0.64	4.5	2.5	5;4	2;3	y	ENSMUSG00000097589.10	Dleu2	chr14	lncRNA	deleted in lymphocytic leukemia, 2
known_NIR_5737	chr14	61861931	61869886	-	61862811	61869886	3pMXE	ENSMUST00000183079.8	known	0.25	1	3	1	3	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.50	5	5	5	5	y	0.86	6	1	6	1	n	-	-	-	-	-	-	0.50	2	2	2	2	n	0.80	4	1	4	1	n	0.56	5	4	5	4	n	0.33	3	6	3	6	n	0.40	2	3	2	3	n	0.57	4	3	4	3	n	ENSMUSG00000097589.10	Dleu2	chr14	lncRNA	deleted in lymphocytic leukemia, 2
known_NIR_5738	chr14	61861931;61862811	61862669;61869886	-	61861931	61869886	cassetteExon	ENSMUST00000183066.8	known	0.67	2.0	1	1;3	1	n	0.50	1.0	1	0;2	1	n	-	-	-	-	-	-	0.33	2.5	5	0;5	5	n	0.08	0.5	6	0;1	6	n	-	-	-	-	-	-	0.33	1.0	2	0;2	2	n	0.11	0.5	4	0;1	4	n	0.38	3.0	5	2;4	5	y	0.50	3.0	3	0;6	3	n	0.60	3.0	2	3;3	2	n	0.33	2.0	4	1;3	4	n	ENSMUSG00000097589.10	Dleu2	chr14	lncRNA	deleted in lymphocytic leukemia, 2
known_NIR_5739	chr14	61862811	61869886	-	61841255	61869886	A3SS	ENSMUST00000182768.8	known	0.14	3	19	3	19	y	0.08	2	23	2	23	y	0.00	0	3	0	3	n	0.23	5	17	5	17	y	0.06	1	17	1	17	n	0.00	0	5	0	5	n	0.10	2	19	2	19	y	0.17	1	5	1	5	n	0.21	4	15	4	15	y	0.21	6	23	6	23	y	0.23	3	10	3	10	y	0.12	3	23	3	23	y	ENSMUSG00000097589.10	Dleu2	chr14	lncRNA	deleted in lymphocytic leukemia, 2
known_NIR_5740	chr14	61866265	61869886	-	61841255	61869886	A3SS	ENSMUST00000182768.8	known	0.14	3	19	3	19	y	0.18	5	23	5	23	y	0.00	0	3	0	3	n	0.35	9	17	9	17	y	0.15	3	17	3	17	y	0.29	2	5	2	5	n	0.10	2	19	2	19	y	0.29	2	5	2	5	n	0.00	0	15	0	15	n	0.12	3	23	3	23	y	0.38	6	10	6	10	y	0.23	7	23	7	23	y	ENSMUSG00000097589.10	Dleu2	chr14	lncRNA	deleted in lymphocytic leukemia, 2
known_NIR_5741	chr14	61866265	61869886	-	61861931	61869886	A3SS	ENSMUST00000183066.8	known	0.75	3	1	3	1	n	0.83	5	1	5	1	n	-	-	-	-	-	-	0.64	9	5	9	5	y	0.33	3	6	3	6	n	1.00	2	0	2	0	n	0.50	2	2	2	2	n	0.33	2	4	2	4	n	0.00	0	5	0	5	n	0.50	3	3	3	3	n	0.75	6	2	6	2	n	0.64	7	4	7	4	y	ENSMUSG00000097589.10	Dleu2	chr14	lncRNA	deleted in lymphocytic leukemia, 2
known_NIR_5742	chr14	61866265	61869886	-	61862811	61869886	A3SS	ENSMUST00000182259.8	known	0.50	3	3	3	3	n	0.71	5	2	5	2	n	-	-	-	-	-	-	0.64	9	5	9	5	y	0.75	3	1	3	1	n	1.00	2	0	2	0	n	0.50	2	2	2	2	n	0.67	2	1	2	1	n	0.00	0	4	0	4	n	0.33	3	6	3	6	n	0.67	6	3	6	3	n	0.70	7	3	7	3	y	ENSMUSG00000097589.10	Dleu2	chr14	lncRNA	deleted in lymphocytic leukemia, 2
known_NIR_5743	chr14	6188023	6189024	-	6188023	6188949	A5SS	ENSMUST00000022310.7	known	0.00	0	79	0	79	n	0.00	0	51	0	51	n	0.00	0	97	0	97	n	0.00	0	91	0	91	n	0.00	0	93	0	93	n	0.03	2	63	2	63	y	0.00	0	93	0	93	n	0.02	1	43	1	43	n	0.00	0	60	0	60	n	0.00	0	85	0	85	n	0.00	0	81	0	81	n	0.01	1	95	1	95	n	ENSMUSG00000021785.9	Ngly1	chr14	protein_coding	N-glycanase 1
known_NIR_5744	chr14	61880904;61881508	61881413;61919559	-	61880904	61919559	cassetteExon	ENSMUST00000182768.8	known	0.08	2.5	29	3;2	29	y	0.03	1.0	32	2;0	32	n	0.00	0.0	9	0;0	9	n	0.04	1.0	22	1;1	22	n	0.00	0.0	36	0;0	36	n	0.00	0.0	12	0;0	12	n	0.00	0.0	41	0;0	41	n	0.00	0.0	9	0;0	9	n	0.18	3.5	16	4;3	16	y	0.04	1.5	40	3;0	40	n	0.00	0.0	26	0;0	26	n	0.01	0.5	39	0;1	39	n	ENSMUSG00000097589.10	Dleu2	chr14	lncRNA	deleted in lymphocytic leukemia, 2
known_NIR_5745	chr14	6220641	6226965	+	6220286	6226965	A5SS	ENSMUST00000022311.12	known	0.17	1	5	1	5	n	0.14	1	6	1	6	n	0.45	5	6	5	6	y	0.29	2	5	2	5	n	0.29	2	5	2	5	n	0.00	0	1	0	1	n	0.33	2	4	2	4	n	0.67	2	1	2	1	n	1.00	2	0	2	0	n	0.13	2	13	2	13	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000021786.14	Oxsm	chr14	protein_coding	3-oxoacyl-ACP synthase, mitochondrial
known_NIR_5746	chr14	6226473	6226965	+	6220286	6226965	A5SS	ENSMUST00000022311.12	known	0.72	13	5	13	5	y	0.62	10	6	10	6	y	0.81	25	6	25	6	y	0.87	34	5	34	5	y	0.86	31	5	31	5	y	0.92	12	1	12	1	n	0.83	20	4	20	4	y	0.95	19	1	19	1	n	1.00	15	0	15	0	n	0.57	17	13	17	13	y	0.73	8	3	8	3	y	0.62	8	5	8	5	y	ENSMUSG00000021786.14	Oxsm	chr14	protein_coding	3-oxoacyl-ACP synthase, mitochondrial
known_NIR_5747	chr14	6226473	6226965	+	6220641	6226965	A5SS	ENSMUST00000112624.3	known	0.93	13	1	13	1	n	0.91	10	1	10	1	n	0.83	25	5	25	5	y	0.94	34	2	34	2	y	0.94	31	2	31	2	y	1.00	12	0	12	0	n	0.91	20	2	20	2	y	0.90	19	2	19	2	y	0.88	15	2	15	2	y	0.89	17	2	17	2	y	1.00	8	0	8	0	n	1.00	8	0	8	0	n	ENSMUSG00000021786.14	Oxsm	chr14	protein_coding	3-oxoacyl-ACP synthase, mitochondrial
known_NIR_5748	chr14	6226746	6226965	+	6220286	6226965	A5SS	ENSMUST00000022311.12	known	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.50	5	5	5	5	y	0.00	0	5	0	5	n	0.50	1	1	1	1	n	0.50	4	4	4	4	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.19	3	13	3	13	y	0.40	2	3	2	3	n	0.00	0	5	0	5	n	ENSMUSG00000021786.14	Oxsm	chr14	protein_coding	3-oxoacyl-ACP synthase, mitochondrial
known_NIR_5749	chr14	6226746	6226965	+	6226473	6226965	A5SS	ENSMUST00000112625.9	known	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.00	0	25	0	25	n	0.13	5	34	5	34	y	0.00	0	31	0	31	n	0.08	1	12	1	12	n	0.17	4	20	4	20	y	0.05	1	19	1	19	n	0.06	1	15	1	15	n	0.15	3	17	3	17	y	0.20	2	8	2	8	y	0.00	0	8	0	8	n	ENSMUSG00000021786.14	Oxsm	chr14	protein_coding	3-oxoacyl-ACP synthase, mitochondrial
known_NIR_5750	chr14	62801968	62843322	+	62801968	62824602	3pMXE	ENSMUST00000162987.8	known	0.00	0	7	0	7	n	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.20	2	8	2	8	y	0.00	0	2	0	2	n	0.20	2	8	2	8	y	0.67	2	1	2	1	n	0.00	0	3	0	3	n	0.62	5	3	5	3	n	0.50	1	1	1	1	n	0.00	0	5	0	5	n	ENSMUSG00000035184.16	Fam124a	chr14	protein_coding	family with sequence similarity 124, member A
known_NIR_5751	chr14	62801968	62843322	+	62801968;62825335	62824602;62843322	ES	ENSMUST00000039064.8	known	0.00	0	6.0	0	7;5	n	0.25	1	3.0	1	4;2	n	0.00	0	3.5	0	4;3	n	0.00	0	2.0	0	1;3	n	0.21	2	7.5	2	8;7	y	0.00	0	3.0	0	2;4	n	0.29	2	5.0	2	8;2	y	0.80	2	0.5	2	1;0	n	0.00	0	3.0	0	3;3	n	0.77	5	1.5	5	3;0	n	0.40	1	1.5	1	1;2	n	0.00	0	2.5	0	5;0	n	ENSMUSG00000035184.16	Fam124a	chr14	protein_coding	family with sequence similarity 124, member A
known_NIR_5752	chr14	62971299	62981358	-	62953931	62981358	A3SS	ENSMUST00000053959.7	known	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.00	0	20	0	20	n	0.06	1	15	1	15	n	0.12	4	28	4	28	y	0.20	2	8	2	8	y	0.10	3	26	3	26	y	0.00	0	26	0	26	n	0.00	0	8	0	8	n	0.03	1	30	1	30	n	0.22	2	7	2	7	n	0.11	2	16	2	16	y	ENSMUSG00000035161.8	Ints6	chr14	protein_coding	integrator complex subunit 6
known_NIR_5753	chr14	63396595	63400751	-	63396808	63400751	3pMXE	ENSMUST00000224267.3	known	1.00	330	0	330	0	n	1.00	188	0	188	0	n	1.00	509	2	509	2	y	1.00	329	1	329	1	n	1.00	825	0	825	0	n	0.99	496	3	496	3	y	1.00	685	1	685	1	n	1.00	402	2	402	2	y	1.00	377	0	377	0	n	1.00	566	2	566	2	y	1.00	486	0	486	0	n	1.00	469	1	469	1	n	ENSMUSG00000021273.12	Fdft1	chr14	protein_coding	farnesyl diphosphate farnesyl transferase 1
known_NIR_5754	chr14	63396595;63396808	63396687;63400751	-	63396595	63400751	cassetteExon	ENSMUST00000238526.2	known	0.01	2.5	330	5;0	330	n	0.01	1.0	188	2;0	188	n	0.02	8.5	509	15;2	509	y	0.01	3.5	329	6;1	329	n	0.02	16.0	825	32;0	825	n	0.02	10.5	496	18;3	496	y	0.02	11.0	685	21;1	685	n	0.01	6.0	402	10;2	402	y	0.02	9.5	377	19;0	377	n	0.01	4.5	566	7;2	566	y	0.02	8.5	486	17;0	486	n	0.01	4.0	469	7;1	469	n	ENSMUSG00000021273.12	Fdft1	chr14	protein_coding	farnesyl diphosphate farnesyl transferase 1
known_NIR_5755	chr14	63442207	63477985	-	63442204	63477985	A3SS	ENSMUST00000118022.8	known	0.15	2	11	2	11	y	0.38	3	5	3	5	n	0.45	9	11	9	11	y	0.38	3	5	3	5	n	0.32	10	21	10	21	y	0.44	4	5	4	5	n	0.42	5	7	5	7	y	0.40	2	3	2	3	n	0.25	2	6	2	6	n	0.35	6	11	6	11	y	0.58	11	8	11	8	y	0.20	2	8	2	8	y	ENSMUSG00000021944.16	Gata4	chr14	protein_coding	GATA binding protein 4
known_NIR_5756	chr14	63479094	63509033	-	63479094	63482600	5pMXE	ENSMUST00000118022.8	known	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.10	2	19	2	19	y	0.00	0	9	0	9	n	0.12	2	15	2	15	y	0.17	3	15	3	15	y	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.33	2	4	2	4	n	0.00	0	11	0	11	n	ENSMUSG00000021944.16	Gata4	chr14	protein_coding	GATA binding protein 4
known_NIR_5757	chr14	65027147	65040423	+	65027147	65037794	A3SS&ES	ENSMUST00000100473.5	known	0.29	8	20	8	20	y	0.18	4	18	4	18	y	0.20	6	24	6	24	y	0.09	4	39	4	39	y	0.16	7	38	7	38	y	0.12	3	23	3	23	y	0.21	9	33	9	33	y	0.33	10	20	10	20	y	0.21	7	26	7	26	y	0.11	4	31	4	31	y	0.26	6	17	6	17	y	0.18	6	28	6	28	y	ENSMUSG00000060012.10	Kif13b	chr14	protein_coding	kinesin family member 13B
known_NIR_5758	chr14	65027147	65040423	+	65027147;65037856	65037794;65040423	ES	ENSMUST00000224503.2	known	0.33	8	16.0	8	20;12	y	0.23	4	13.5	4	18;9	y	0.20	6	24.5	6	24;25	y	0.10	4	36.0	4	39;33	y	0.17	7	34.5	7	38;31	y	0.12	3	23.0	3	23;23	y	0.25	9	27.0	9	33;21	y	0.31	10	22.0	10	20;24	y	0.26	7	20.0	7	26;14	y	0.12	4	30.5	4	31;30	y	0.26	6	17.0	6	17;17	y	0.17	6	28.5	6	28;29	y	ENSMUSG00000060012.10	Kif13b	chr14	protein_coding	kinesin family member 13B
known_NIR_5759	chr14	65054585	65059503	-	65054585	65063050	A5SS	ENSMUST00000022544.14	known	0.21	4	15	4	15	y	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.09	1	10	1	10	n	0.20	1	4	1	4	n	0.25	3	9	3	9	y	0.27	3	8	3	8	y	0.07	1	14	1	14	n	0.08	1	11	1	11	n	0.00	0	13	0	13	n	0.06	1	17	1	17	n	ENSMUSG00000021972.15	Hmbox1	chr14	protein_coding	homeobox containing 1
known_NIR_5760	chr14	65061147	65063050	-	65054585	65063050	A3SS	ENSMUST00000022544.14	known	0.00	0	15	0	15	n	0.22	2	7	2	7	n	0.57	13	10	13	10	y	0.30	6	14	6	14	y	0.55	12	10	12	10	y	0.71	10	4	10	4	y	0.55	11	9	11	9	y	0.50	8	8	8	8	y	0.22	4	14	4	14	y	0.45	9	11	9	11	y	0.28	5	13	5	13	y	0.26	6	17	6	17	y	ENSMUSG00000021972.15	Hmbox1	chr14	protein_coding	homeobox containing 1
known_NIR_5761	chr14	65061147	65063050	-	65062819	65063050	3pMXE	ENSMUST00000175744.8	known	0.00	0	3	0	3	n	0.67	2	1	2	1	n	0.76	13	4	13	4	y	0.86	6	1	6	1	n	0.75	12	4	12	4	y	0.83	10	2	10	2	y	0.73	11	4	11	4	y	0.73	8	3	8	3	y	0.40	4	6	4	6	y	0.75	9	3	9	3	y	1.00	5	0	5	0	n	0.55	6	5	6	5	y	ENSMUSG00000021972.15	Hmbox1	chr14	protein_coding	homeobox containing 1
known_NIR_5762	chr14	65062819	65063050	-	65054585	65063050	A3SS	ENSMUST00000022544.14	known	0.17	3	15	3	15	y	0.12	1	7	1	7	n	0.29	4	10	4	10	y	0.07	1	14	1	14	n	0.29	4	10	4	10	y	0.33	2	4	2	4	n	0.31	4	9	4	9	y	0.27	3	8	3	8	y	0.30	6	14	6	14	y	0.21	3	11	3	11	y	0.00	0	13	0	13	n	0.23	5	17	5	17	y	ENSMUSG00000021972.15	Hmbox1	chr14	protein_coding	homeobox containing 1
known_NIR_5763	chr14	65063141	65064221	-	65063144	65064221	A3SS	ENSMUST00000022544.14	known	0.33	5	10	5	10	y	0.56	9	7	9	7	y	0.52	12	11	12	11	y	0.33	8	16	8	16	y	0.46	11	13	11	13	y	0.79	11	3	11	3	y	0.58	14	10	14	10	y	0.29	6	15	6	15	y	0.41	9	13	9	13	y	0.55	17	14	17	14	y	0.44	7	9	7	9	y	0.45	9	11	9	11	y	ENSMUSG00000021972.15	Hmbox1	chr14	protein_coding	homeobox containing 1
known_NIR_5764	chr14	65317924	65387259	-	65317924	65335446	5pMXE	ENSMUST00000022550.8	known	0.00	0	3	0	3	n	0.14	1	6	1	6	n	0.00	0	21	0	21	n	0.03	1	29	1	29	n	0.14	5	30	5	30	y	0.00	0	16	0	16	n	0.00	0	24	0	24	n	0.05	1	20	1	20	n	0.17	1	5	1	5	n	0.14	3	19	3	19	y	0.00	0	5	0	5	n	0.00	0	12	0	12	n	ENSMUSG00000021978.10	Extl3	chr14	protein_coding	exostosin-like glycosyltransferase 3
known_NIR_5765	chr14	65828054	65830374	-	65828054	65830431	A5SS	ENSMUST00000225355.2	known	0.85	29	5	29	5	y	0.91	20	2	20	2	y	0.96	51	2	51	2	y	0.86	32	5	32	5	y	0.90	43	5	43	5	y	0.89	31	4	31	4	y	0.72	28	11	28	11	y	0.92	23	2	23	2	y	0.81	21	5	21	5	y	0.92	33	3	33	3	y	0.95	20	1	20	1	n	0.91	29	3	29	3	y	ENSMUSG00000022031.7	Elp3	chr14	protein_coding	elongator acetyltransferase complex subunit 3
known_NIR_5766	chr14	65916899	65927217	+	65908123	65927217	A5SS	ENSMUST00000022610.15	known	0.00	0	35	0	35	n	0.00	0	41	0	41	n	0.00	0	179	0	179	n	0.00	0	54	0	54	n	0.02	3	177	3	177	y	0.00	0	116	0	116	n	0.00	0	101	0	101	n	0.00	0	99	0	99	n	0.00	0	46	0	46	n	0.00	0	45	0	45	n	0.00	0	18	0	18	n	0.00	0	39	0	39	n	ENSMUSG00000022032.15	Scara5	chr14	protein_coding	scavenger receptor class A, member 5
known_NIR_5767	chr14	65979628	65980591	+	65979628	65997034	A3SS	ENSMUST00000022610.15	known	0.00	0	34	0	34	n	0.00	0	46	0	46	n	0.01	1	138	1	138	n	0.00	0	55	0	55	n	0.02	3	189	3	189	y	0.02	2	125	2	125	y	0.00	0	110	0	110	n	0.03	3	107	3	107	y	0.00	0	37	0	37	n	0.00	0	54	0	54	n	0.00	0	8	0	8	n	0.02	1	59	1	59	n	ENSMUSG00000022032.15	Scara5	chr14	protein_coding	scavenger receptor class A, member 5
known_NIR_5768	chr14	66207348	66209181	+	66206137	66209181	A5SS	ENSMUST00000022616.14	known	0.06	185	2904	185	2904	y	0.05	144	2762	144	2762	y	0.05	203	3826	203	3826	y	0.06	242	3986	242	3986	y	0.05	260	4786	260	4786	y	0.05	129	2598	129	2598	y	0.07	272	3905	272	3905	y	0.06	178	2995	178	2995	y	0.07	186	2653	186	2653	y	0.08	337	3960	337	3960	y	0.08	203	2449	203	2449	y	0.07	279	3453	279	3453	y	ENSMUSG00000022037.16	Clu	chr14	protein_coding	clusterin
known_NIR_5769	chr14	66208153	66209181	+	66206137	66209181	A5SS	ENSMUST00000022616.14	known	0.00	0	2904	0	2904	n	0.00	0	2762	0	2762	n	0.00	4	3826	4	3826	y	0.00	2	3986	2	3986	y	0.00	4	4786	4	4786	y	0.00	1	2598	1	2598	n	0.00	2	3905	2	3905	y	0.00	2	2995	2	2995	y	0.00	0	2653	0	2653	n	0.00	1	3960	1	3960	n	0.00	2	2449	2	2449	y	0.00	2	3453	2	3453	y	ENSMUSG00000022037.16	Clu	chr14	protein_coding	clusterin
known_NIR_5770	chr14	66208153	66209181	+	66207348	66209181	A5SS	ENSMUST00000153460.8	known	0.00	0	185	0	185	n	0.00	0	144	0	144	n	0.02	4	203	4	203	y	0.01	2	242	2	242	y	0.02	4	260	4	260	y	0.01	1	129	1	129	n	0.01	2	272	2	272	y	0.01	2	178	2	178	y	0.00	0	186	0	186	n	0.00	1	337	1	337	n	0.01	2	203	2	203	y	0.01	2	279	2	279	y	ENSMUSG00000022037.16	Clu	chr14	protein_coding	clusterin
known_NIR_5771	chr14	66208393	66209181	+	66206137	66209181	A5SS	ENSMUST00000022616.14	known	0.00	8	2904	8	2904	y	0.00	10	2762	10	2762	y	0.00	11	3826	11	3826	y	0.00	9	3986	9	3986	y	0.00	13	4786	13	4786	y	0.00	10	2598	10	2598	y	0.00	6	3905	6	3905	y	0.00	6	2995	6	2995	y	0.00	6	2653	6	2653	y	0.00	7	3960	7	3960	y	0.00	2	2449	2	2449	y	0.00	12	3453	12	3453	y	ENSMUSG00000022037.16	Clu	chr14	protein_coding	clusterin
known_NIR_5772	chr14	66208393	66209181	+	66207348	66209181	A5SS	ENSMUST00000153460.8	known	0.04	8	185	8	185	y	0.06	10	144	10	144	y	0.05	11	203	11	203	y	0.04	9	242	9	242	y	0.05	13	260	13	260	y	0.07	10	129	10	129	y	0.02	6	272	6	272	y	0.03	6	178	6	178	y	0.03	6	186	6	186	y	0.02	7	337	7	337	y	0.01	2	203	2	203	y	0.04	12	279	12	279	y	ENSMUSG00000022037.16	Clu	chr14	protein_coding	clusterin
known_NIR_5773	chr14	66208393	66209181	+	66208153	66209181	A5SS	ENSMUST00000127387.8	known	1.00	8	0	8	0	n	1.00	10	0	10	0	n	0.73	11	4	11	4	y	0.82	9	2	9	2	y	0.76	13	4	13	4	y	0.91	10	1	10	1	n	0.75	6	2	6	2	n	0.75	6	2	6	2	n	1.00	6	0	6	0	n	0.88	7	1	7	1	n	0.50	2	2	2	2	n	0.86	12	2	12	2	y	ENSMUSG00000022037.16	Clu	chr14	protein_coding	clusterin
known_NIR_5774	chr14	66208624	66209181	+	66206137	66209181	A5SS	ENSMUST00000022616.14	known	0.00	3	2904	3	2904	y	0.00	3	2762	3	2762	y	0.00	3	3826	3	3826	y	0.00	5	3986	5	3986	y	0.00	7	4786	7	4786	y	0.00	4	2598	4	2598	y	0.00	4	3905	4	3905	y	0.00	2	2995	2	2995	y	0.00	3	2653	3	2653	y	0.00	5	3960	5	3960	y	0.00	0	2449	0	2449	n	0.00	8	3453	8	3453	y	ENSMUSG00000022037.16	Clu	chr14	protein_coding	clusterin
known_NIR_5775	chr14	66208624	66209181	+	66207348	66209181	A5SS	ENSMUST00000153460.8	known	0.02	3	185	3	185	y	0.02	3	144	3	144	y	0.01	3	203	3	203	y	0.02	5	242	5	242	y	0.03	7	260	7	260	y	0.03	4	129	4	129	y	0.01	4	272	4	272	y	0.01	2	178	2	178	y	0.02	3	186	3	186	y	0.01	5	337	5	337	y	0.00	0	203	0	203	n	0.03	8	279	8	279	y	ENSMUSG00000022037.16	Clu	chr14	protein_coding	clusterin
known_NIR_5776	chr14	66208624	66209181	+	66208153	66209181	A5SS	ENSMUST00000127387.8	known	1.00	3	0	3	0	n	1.00	3	0	3	0	n	0.43	3	4	3	4	n	0.71	5	2	5	2	n	0.64	7	4	7	4	y	0.80	4	1	4	1	n	0.67	4	2	4	2	n	0.50	2	2	2	2	n	1.00	3	0	3	0	n	0.83	5	1	5	1	n	0.00	0	2	0	2	n	0.80	8	2	8	2	y	ENSMUSG00000022037.16	Clu	chr14	protein_coding	clusterin
known_NIR_5777	chr14	66208624	66209181	+	66208393	66209181	A5SS	ENSMUST00000138191.8	known	0.27	3	8	3	8	y	0.23	3	10	3	10	y	0.21	3	11	3	11	y	0.36	5	9	5	9	y	0.35	7	13	7	13	y	0.29	4	10	4	10	y	0.40	4	6	4	6	y	0.25	2	6	2	6	n	0.33	3	6	3	6	n	0.42	5	7	5	7	y	0.00	0	2	0	2	n	0.40	8	12	8	12	y	ENSMUSG00000022037.16	Clu	chr14	protein_coding	clusterin
known_NIR_5778	chr14	66208993	66209181	+	66206137	66209181	A5SS	ENSMUST00000022616.14	known	0.00	2	2904	2	2904	y	0.00	3	2762	3	2762	y	0.00	0	3826	0	3826	n	0.00	1	3986	1	3986	n	0.00	0	4786	0	4786	n	0.00	1	2598	1	2598	n	0.00	4	3905	4	3905	y	0.00	0	2995	0	2995	n	0.00	1	2653	1	2653	n	0.00	3	3960	3	3960	y	0.00	0	2449	0	2449	n	0.00	0	3453	0	3453	n	ENSMUSG00000022037.16	Clu	chr14	protein_coding	clusterin
known_NIR_5779	chr14	66208993	66209181	+	66207348	66209181	A5SS	ENSMUST00000153460.8	known	0.01	2	185	2	185	y	0.02	3	144	3	144	y	0.00	0	203	0	203	n	0.00	1	242	1	242	n	0.00	0	260	0	260	n	0.01	1	129	1	129	n	0.01	4	272	4	272	y	0.00	0	178	0	178	n	0.01	1	186	1	186	n	0.01	3	337	3	337	y	0.00	0	203	0	203	n	0.00	0	279	0	279	n	ENSMUSG00000022037.16	Clu	chr14	protein_coding	clusterin
known_NIR_5780	chr14	66208993	66209181	+	66208393	66209181	A5SS	ENSMUST00000138191.8	known	0.20	2	8	2	8	y	0.23	3	10	3	10	y	0.00	0	11	0	11	n	0.10	1	9	1	9	n	0.00	0	13	0	13	n	0.09	1	10	1	10	n	0.40	4	6	4	6	y	0.00	0	6	0	6	n	0.14	1	6	1	6	n	0.30	3	7	3	7	y	0.00	0	2	0	2	n	0.00	0	12	0	12	n	ENSMUSG00000022037.16	Clu	chr14	protein_coding	clusterin
known_NIR_5781	chr14	66209305	66210774	+	66209301	66210774	A5SS	ENSMUST00000022616.14	known	0.01	48	5629	48	5629	y	0.01	44	5474	44	5474	y	0.01	47	7206	47	7206	y	0.01	37	7271	37	7271	y	0.01	61	9101	61	9101	y	0.01	26	4806	26	4806	y	0.01	58	7013	58	7013	y	0.01	33	5433	33	5433	y	0.01	27	4749	27	4749	y	0.01	62	7208	62	7208	y	0.01	26	4695	26	4695	y	0.01	46	6809	46	6809	y	ENSMUSG00000022037.16	Clu	chr14	protein_coding	clusterin
known_NIR_5782	chr14	66347724	66354160	-	66347724	66349638	5pMXE	ENSMUST00000224698.2	known	1.00	718	1	718	1	n	1.00	593	1	593	1	n	0.99	429	6	429	6	y	1.00	1376	4	1376	4	y	1.00	1251	6	1251	6	y	1.00	244	0	244	0	n	1.00	1493	6	1493	6	y	1.00	517	0	517	0	n	1.00	778	0	778	0	n	1.00	1496	5	1496	5	y	1.00	964	3	964	3	y	1.00	950	2	950	2	y	ENSMUSG00000022040.9	Ephx2	chr14	protein_coding	epoxide hydrolase 2, cytoplasmic
known_NIR_5783	chr14	66394556	66395464	-	66394556	66395497	A5SS	ENSMUST00000022622.14	known	0.00	0	73	0	73	n	0.00	0	65	0	65	n	0.08	1	11	1	11	n	0.04	4	97	4	97	y	0.01	1	83	1	83	n	0.00	0	27	0	27	n	0.05	3	55	3	55	y	0.00	0	38	0	38	n	0.00	0	53	0	53	n	0.01	1	105	1	105	n	0.03	2	71	2	71	y	0.00	0	102	0	102	n	ENSMUSG00000059456.14	Ptk2b	chr14	protein_coding	PTK2 protein tyrosine kinase 2 beta
known_NIR_5784	chr14	66396126	66402713	-	66396126	66400474	5pMXE	ENSMUST00000148104.2	known	0.03	1	37	1	37	n	0.11	5	41	5	41	y	0.12	2	15	2	15	y	0.03	2	71	2	71	y	0.09	7	70	7	70	y	0.00	0	15	0	15	n	0.04	3	72	3	72	y	0.14	3	18	3	18	y	0.10	5	47	5	47	y	0.07	6	80	6	80	y	0.05	3	56	3	56	y	0.02	1	61	1	61	n	ENSMUSG00000059456.14	Ptk2b	chr14	protein_coding	PTK2 protein tyrosine kinase 2 beta
known_NIR_5785	chr14	66396126	66402713	-	66396126;66400599	66400474;66402713	ES	ENSMUST00000022622.14	known	0.03	1	37.0	1	37;37	n	0.10	5	43.5	5	41;46	y	0.16	2	10.5	2	15;6	y	0.04	2	54.0	2	71;37	y	0.11	7	57.0	7	70;44	y	0.00	0	13.5	0	15;12	n	0.05	3	60.5	3	72;49	y	0.16	3	15.5	3	18;13	y	0.11	5	41.5	5	47;36	y	0.08	6	70.5	6	80;61	y	0.05	3	54.5	3	56;53	y	0.02	1	54.0	1	61;47	n	ENSMUSG00000059456.14	Ptk2b	chr14	protein_coding	PTK2 protein tyrosine kinase 2 beta
known_NIR_5786	chr14	66965449	66969013	+	66965280	66969013	A5SS	ENSMUST00000159365.8	known	0.27	3	8	3	8	y	0.25	1	3	1	3	n	0.25	1	3	1	3	n	0.44	4	5	4	5	n	0.55	6	5	6	5	y	0.33	1	2	1	2	n	0.50	2	2	2	2	n	0.70	7	3	7	3	y	1.00	3	0	3	0	n	1.00	4	0	4	0	n	0.62	5	3	5	3	n	0.62	5	3	5	3	n	ENSMUSG00000045875.14	Adra1a	chr14	protein_coding	adrenergic receptor, alpha 1a
known_NIR_5787	chr14	67225224	67226584	-	67225224;67226390	67226349;67226584	ES	ENSMUST00000111115.8	known	1.00	163	0.0	163	0;0	n	1.00	125	0.0	125	0;0	n	1.00	240	0.0	240	0;0	n	1.00	158	0.0	158	0;0	n	1.00	176	0.0	176	0;0	n	1.00	131	0.0	131	0;0	n	0.95	207	10.5	207	10;11	y	1.00	126	0.0	126	0;0	n	1.00	118	0.0	118	0;0	n	1.00	235	0.0	235	0;0	n	1.00	159	0.5	159	1;0	n	1.00	223	0.0	223	0;0	n	ENSMUSG00000022051.16	Bnip3l	chr14	protein_coding	BCL2/adenovirus E1B interacting protein 3-like
known_NIR_5788	chr14	67266479;67275457	67275387;67276324	-	67266479	67276324	cassetteExon	ENSMUST00000089230.7	known	0.05	1.5	30	2;1	30	n	0.07	1.0	13	2;0	13	n	0.01	0.5	43	0;1	43	n	0.10	3.0	28	4;2	28	y	0.06	2.5	37	3;2	37	y	0.03	0.5	15	0;1	15	n	0.03	1.0	35	1;1	35	n	0.00	0.0	19	0;0	19	n	0.00	0.0	16	0;0	16	n	0.04	1.5	33	2;1	33	n	0.02	0.5	30	0;1	30	n	0.10	3.5	30	2;5	30	y	ENSMUSG00000022052.10	Ppp2r2a	chr14	protein_coding	protein phosphatase 2, regulatory subunit B, alpha
known_NIR_5789	chr14	67953833	67962007	+	67953630	67962007	A5SS	ENSMUST00000152243.8	known	1.00	3	0	3	0	n	1.00	4	0	4	0	n	1.00	16	0	16	0	n	0.94	17	1	17	1	n	0.86	24	4	24	4	y	0.67	8	4	8	4	y	0.84	16	3	16	3	y	1.00	13	0	13	0	n	0.86	6	1	6	1	n	1.00	2	0	2	0	n	1.00	11	0	11	0	n	1.00	7	0	7	0	n	ENSMUSG00000034327.18	Kctd9	chr14	protein_coding	potassium channel tetramerisation domain containing 9
known_NIR_5790	chr14	67966195	67966800	+	67966195	67966673	A3SS	ENSMUST00000152243.8	known	0.58	7	5	7	5	y	0.80	4	1	4	1	n	0.89	25	3	25	3	y	0.89	17	2	17	2	y	0.78	25	7	25	7	y	0.79	22	6	22	6	y	0.78	21	6	21	6	y	0.91	20	2	20	2	y	0.62	10	6	10	6	y	0.76	26	8	26	8	y	0.85	11	2	11	2	y	0.91	20	2	20	2	y	ENSMUSG00000034327.18	Kctd9	chr14	protein_coding	potassium channel tetramerisation domain containing 9
known_NIR_5791	chr14	67970891	67975055	+	67970891;67971739	67971590;67975055	ES	ENSMUST00000152243.8	known	0.00	0	16.0	0	17;15	n	0.00	0	7.5	0	6;9	n	0.00	0	21.0	0	22;20	n	0.00	0	15.0	0	16;14	n	0.08	2	23.0	2	25;21	y	0.00	0	12.0	0	11;13	n	0.12	3	22.5	3	21;24	y	0.00	0	11.0	0	13;9	n	0.00	0	10.0	0	12;8	n	0.00	0	22.0	0	22;22	n	0.00	0	9.5	0	9;10	n	0.08	1	11.0	1	7;15	n	ENSMUSG00000034327.18	Kctd9	chr14	protein_coding	potassium channel tetramerisation domain containing 9
known_NIR_5792	chr14	69485086	69486332	-	69485086	69486843	A5SS	ENSMUST00000037064.5	known	0.00	0	18	0	18	n	0.00	0	11	0	11	n	0.07	1	14	1	14	n	0.00	0	25	0	25	n	0.00	0	26	0	26	n	0.00	0	10	0	10	n	0.00	0	25	0	25	n	0.00	0	16	0	16	n	0.04	1	22	1	22	n	0.00	0	35	0	35	n	0.00	0	26	0	26	n	0.06	2	29	2	29	y	ENSMUSG00000034248.8	Slc25a37	chr14	protein_coding	solute carrier family 25, member 37
known_NIR_5793	chr14	69610570;69659448	69659347;69740431	-	69610570	69740431	cassetteExon	ENSMUST00000183917.8	known	1.00	6.5	0	2;11	0	n	0.57	4.0	3	0;8	3	n	0.81	8.5	2	0;17	2	n	0.56	2.5	2	0;5	2	n	0.80	8.0	2	1;15	2	n	1.00	4.5	0	0;9	0	n	0.67	2.0	1	0;4	1	n	1.00	2.0	0	0;4	0	n	0.33	0.5	1	0;1	1	n	0.45	2.5	3	1;4	3	n	0.67	6.0	3	3;9	3	y	0.56	2.5	2	1;4	2	n	ENSMUSG00000093954.9	Gm16867	chr14	protein_coding	predicted gene, 16867
known_NIR_5794	chr14	69702460	69740431	-	69610570	69740431	A3SS	ENSMUST00000183917.8	known	1.00	7	0	7	0	n	0.50	3	3	3	3	n	0.83	10	2	10	2	y	0.78	7	2	7	2	n	0.78	7	2	7	2	n	1.00	5	0	5	0	n	0.75	3	1	3	1	n	1.00	5	0	5	0	n	0.80	4	1	4	1	n	0.40	2	3	2	3	n	0.00	0	3	0	3	n	0.60	3	2	3	2	n	ENSMUSG00000093954.9	Gm16867	chr14	protein_coding	predicted gene, 16867
known_NIR_5795	chr14	69702460	69740431	-	69659448	69740431	A3SS	ENSMUST00000184816.8	known	0.39	7	11	7	11	y	0.27	3	8	3	8	y	0.37	10	17	10	17	y	0.58	7	5	7	5	y	0.32	7	15	7	15	y	0.36	5	9	5	9	y	0.43	3	4	3	4	n	0.56	5	4	5	4	n	0.80	4	1	4	1	n	0.33	2	4	2	4	n	0.00	0	9	0	9	n	0.43	3	4	3	4	n	ENSMUSG00000093954.9	Gm16867	chr14	protein_coding	predicted gene, 16867
known_NIR_5796	chr14	70356101	70361632	+	70356101;70361330	70361290;70361632	ES	ENSMUST00000022680.9	known	0.00	0	49.5	0	46;53	n	0.00	0	45.5	0	38;53	n	0.04	2	54.5	2	48;61	y	0.00	0	44.5	0	48;41	n	0.00	0	51.0	0	46;56	n	0.00	0	32.0	0	28;36	n	0.06	4	64.5	4	60;69	y	0.00	0	32.5	0	36;29	n	0.00	0	30.0	0	28;32	n	0.00	0	43.5	0	41;46	n	0.00	0	38.0	0	32;44	n	0.02	1	63.5	1	65;62	n	ENSMUSG00000022089.10	Bin3	chr14	protein_coding	bridging integrator 3
known_NIR_5797	chr14	70356101	70361632	+	70361330	70361632	A5SS&ES	ENSMUST00000226385.2	known	0.00	0	53	0	53	n	0.00	0	53	0	53	n	0.03	2	61	2	61	y	0.00	0	41	0	41	n	0.00	0	56	0	56	n	0.00	0	36	0	36	n	0.05	4	69	4	69	y	0.00	0	29	0	29	n	0.00	0	32	0	32	n	0.00	0	46	0	46	n	0.00	0	44	0	44	n	0.02	1	62	1	62	n	ENSMUSG00000022089.10	Bin3	chr14	protein_coding	bridging integrator 3
known_NIR_5798	chr14	70361491	70361632	+	70361330	70361632	A5SS	ENSMUST00000022680.9	known	0.02	1	53	1	53	n	0.04	2	53	2	53	y	0.02	1	61	1	61	n	0.00	0	41	0	41	n	0.02	1	56	1	56	n	0.00	0	36	0	36	n	0.00	0	69	0	69	n	0.03	1	29	1	29	n	0.03	1	32	1	32	n	0.04	2	46	2	46	y	0.02	1	44	1	44	n	0.00	0	62	0	62	n	ENSMUSG00000022089.10	Bin3	chr14	protein_coding	bridging integrator 3
known_NIR_5799	chr14	70366443	70366967	+	70366435	70366967	A5SS	ENSMUST00000022680.9	known	0.00	0	23	0	23	n	0.02	1	40	1	40	n	0.03	2	56	2	56	y	0.02	1	45	1	45	n	0.00	0	64	0	64	n	0.00	0	28	0	28	n	0.02	1	49	1	49	n	0.00	0	26	0	26	n	0.10	4	37	4	37	y	0.00	0	45	0	45	n	0.00	0	34	0	34	n	0.01	1	79	1	79	n	ENSMUSG00000022089.10	Bin3	chr14	protein_coding	bridging integrator 3
known_NIR_5800	chr14	70440865	70444973	-	70440865	70443211	5pMXE	ENSMUST00000227653.2	known	0.41	14	20	14	20	y	0.37	11	19	11	19	y	0.28	8	21	8	21	y	0.50	25	25	25	25	y	0.46	24	28	24	28	y	0.54	7	6	7	6	y	0.28	16	42	16	42	y	0.50	9	9	9	9	y	0.41	15	22	15	22	y	0.38	19	31	19	31	y	0.65	20	11	20	11	y	0.32	23	50	23	50	y	ENSMUSG00000022091.7	Sorbs3	chr14	protein_coding	sorbin and SH3 domain containing 3
known_NIR_5801	chr14	70461380	70461759	-	70457495	70461759	A3SS	ENSMUST00000228911.2	known	0.71	5	2	5	2	n	0.00	0	3	0	3	n	0.33	2	4	2	4	n	0.33	3	6	3	6	n	0.50	4	4	4	4	n	0.33	1	2	1	2	n	0.27	6	16	6	16	y	0.00	0	16	0	16	n	0.50	2	2	2	2	n	0.33	4	8	4	8	y	1.00	3	0	3	0	n	0.55	6	5	6	5	y	ENSMUSG00000022092.12	Ppp3cc	chr14	protein_coding	protein phosphatase 3, catalytic subunit, gamma isoform
known_NIR_5802	chr14	70462497	70472589	-	70462497;70463403	70463377;70472589	ES	ENSMUST00000228911.2	known	0.89	8	1.0	8	1;1	n	1.00	8	0.0	8	0;0	n	1.00	11	0.0	11	0;0	n	1.00	5	0.0	5	0;0	n	1.00	10	0.0	10	0;0	n	1.00	5	0.0	5	0;0	n	0.71	6	2.5	6	3;2	y	1.00	5	0.0	5	0;0	n	1.00	4	0.0	4	0;0	n	1.00	16	0.0	16	0;0	n	1.00	7	0.0	7	0;0	n	0.86	6	1.0	6	1;1	n	ENSMUSG00000022092.12	Ppp3cc	chr14	protein_coding	protein phosphatase 3, catalytic subunit, gamma isoform
known_NIR_5803	chr14	70548424	70553113	-	70548424	70551050	5pMXE	ENSMUST00000145040.2	known	0.77	194	59	194	59	y	0.67	160	78	160	78	y	0.74	760	265	760	265	y	0.76	302	98	302	98	y	0.75	459	155	459	155	y	0.72	298	117	298	117	y	0.74	328	116	328	116	y	0.78	363	102	363	102	y	0.72	181	71	181	71	y	0.78	302	87	302	87	y	0.74	144	50	144	50	y	0.79	296	81	296	81	y	ENSMUSG00000022094.16	Slc39a14	chr14	protein_coding	solute carrier family 39 (zinc transporter), member 14
known_NIR_5804	chr14	70548424;70553282	70553113;70553887	-	70548424;70551219	70551050;70553887	MXE	ENSMUST00000068044.14	known	0.87	212.0	31.0	194;230	59;3	y	0.80	164.5	40.5	160;169	78;3	y	0.86	828.5	137.5	760;897	265;10	y	0.86	321.0	51.0	302;340	98;4	y	0.87	532.0	82.0	459;605	155;9	y	0.85	347.0	60.0	298;396	117;3	y	0.85	358.0	61.0	328;388	116;6	y	0.89	400.0	51.5	363;437	102;1	n	0.83	177.0	36.0	181;173	71;1	n	0.86	276.0	45.5	302;250	87;4	y	0.86	153.5	25.5	144;163	50;1	n	0.88	311.5	42.5	296;327	81;4	y	ENSMUSG00000022094.16	Slc39a14	chr14	protein_coding	solute carrier family 39 (zinc transporter), member 14
known_NIR_5805	chr14	70551219	70553887	-	70553282	70553887	3pMXE	ENSMUST00000152202.8	known	0.01	3	230	3	230	y	0.02	3	169	3	169	y	0.01	10	897	10	897	y	0.01	4	340	4	340	y	0.01	9	605	9	605	y	0.01	3	396	3	396	y	0.02	6	388	6	388	y	0.00	1	437	1	437	n	0.01	1	173	1	173	n	0.02	4	250	4	250	y	0.01	1	163	1	163	n	0.01	4	327	4	327	y	ENSMUSG00000022094.16	Slc39a14	chr14	protein_coding	solute carrier family 39 (zinc transporter), member 14
known_NIR_5806	chr14	70556389	70561160	-	70556389	70568718	A5SS	ENSMUST00000068044.14	known	0.00	0	178	0	178	n	0.00	0	133	0	133	n	0.00	2	569	2	569	y	0.00	0	238	0	238	n	0.00	2	435	2	435	y	0.01	3	272	3	272	y	0.00	1	291	1	291	n	0.00	1	354	1	354	n	0.01	1	137	1	137	n	0.00	0	232	0	232	n	0.00	0	119	0	119	n	0.00	0	214	0	214	n	ENSMUSG00000022094.16	Slc39a14	chr14	protein_coding	solute carrier family 39 (zinc transporter), member 14
known_NIR_5807	chr14	70556389	70561160	-	70556389	70588729	A5SS	ENSMUST00000146453.2	known	0.00	0	21	0	21	n	0.00	0	11	0	11	n	0.02	2	110	2	110	y	0.00	0	37	0	37	n	0.03	2	60	2	60	y	0.06	3	44	3	44	y	0.02	1	40	1	40	n	0.02	1	65	1	65	n	0.06	1	17	1	17	n	0.00	0	31	0	31	n	0.00	0	15	0	15	n	0.00	0	37	0	37	n	ENSMUSG00000022094.16	Slc39a14	chr14	protein_coding	solute carrier family 39 (zinc transporter), member 14
known_NIR_5808	chr14	70556389	70588729	-	70556389	70568718	5pMXE	ENSMUST00000139284.2	known	0.11	21	178	21	178	y	0.08	11	133	11	133	y	0.16	110	569	110	569	y	0.13	37	238	37	238	y	0.12	60	435	60	435	y	0.14	44	272	44	272	y	0.12	40	291	40	291	y	0.16	65	354	65	354	y	0.11	17	137	17	137	y	0.12	31	232	31	232	y	0.11	15	119	15	119	y	0.15	37	214	37	214	y	ENSMUSG00000022094.16	Slc39a14	chr14	protein_coding	solute carrier family 39 (zinc transporter), member 14
known_NIR_5809	chr14	70556389	70588729	-	70556389;70568815	70568718;70588729	ES	ENSMUST00000068044.14	known	0.12	21	150.5	21	178;123	y	0.09	11	114.5	11	133;96	y	0.19	110	484.5	110	569;400	y	0.14	37	218.5	37	238;199	y	0.14	60	362.0	60	435;289	y	0.17	44	219.5	44	272;167	y	0.14	40	253.0	40	291;215	y	0.18	65	296.0	65	354;238	y	0.12	17	123.0	17	137;109	y	0.14	31	184.5	31	232;137	y	0.12	15	105.5	15	119;92	y	0.16	37	193.0	37	214;172	y	ENSMUSG00000022094.16	Slc39a14	chr14	protein_coding	solute carrier family 39 (zinc transporter), member 14
known_NIR_5810	chr14	70556389	70588729	-	70568815	70588729	3pMXE	ENSMUST00000142598.2	known	0.15	21	123	21	123	y	0.10	11	96	11	96	y	0.22	110	400	110	400	y	0.16	37	199	37	199	y	0.17	60	289	60	289	y	0.21	44	167	44	167	y	0.16	40	215	40	215	y	0.21	65	238	65	238	y	0.13	17	109	17	109	y	0.18	31	137	31	137	y	0.14	15	92	15	92	y	0.18	37	172	37	172	y	ENSMUSG00000022094.16	Slc39a14	chr14	protein_coding	solute carrier family 39 (zinc transporter), member 14
known_NIR_5811	chr14	70568815	70585772	-	70568815	70588729	A5SS	ENSMUST00000068044.14	known	0.20	30	123	30	123	y	0.14	15	96	15	96	y	0.07	29	400	29	400	y	0.09	19	199	19	199	y	0.11	37	289	37	289	y	0.13	26	167	26	167	y	0.10	25	215	25	215	y	0.09	24	238	24	238	y	0.09	11	109	11	109	y	0.12	19	137	19	137	y	0.07	7	92	7	92	y	0.09	17	172	17	172	y	ENSMUSG00000022094.16	Slc39a14	chr14	protein_coding	solute carrier family 39 (zinc transporter), member 14
known_NIR_5812	chr14	70723712	70727460	-	70723712	70723994	5pMXE	ENSMUST00000228501.2	known	1.00	180	0	180	0	n	0.99	157	1	157	1	n	1.00	175	0	175	0	n	1.00	211	0	211	0	n	1.00	321	0	321	0	n	1.00	110	0	110	0	n	0.99	224	2	224	2	y	1.00	138	0	138	0	n	1.00	123	0	123	0	n	1.00	204	1	204	1	n	0.99	129	1	129	1	n	1.00	188	0	188	0	n	ENSMUSG00000022098.11	Bmp1	chr14	protein_coding	bone morphogenetic protein 1
known_NIR_5813	chr14	70723712	70727460	-	70724370	70727460	A3SS	ENSMUST00000226906.2	known	0.82	180	40	180	40	y	0.82	157	34	157	34	y	0.76	175	55	175	55	y	0.86	211	35	211	35	y	0.82	321	69	321	69	y	0.75	110	37	110	37	y	0.81	224	51	224	51	y	0.83	138	29	138	29	y	0.80	123	31	123	31	y	0.81	204	49	204	49	y	0.76	129	40	129	40	y	0.79	188	49	188	49	y	ENSMUSG00000022098.11	Bmp1	chr14	protein_coding	bone morphogenetic protein 1
known_NIR_5814	chr14	70723712;70724370	70723994;70727460	-	70723712	70727460	cassetteExon	ENSMUST00000022693.9	known	0.10	20.0	180	0;40	180	n	0.10	17.5	157	1;34	157	n	0.14	27.5	175	0;55	175	n	0.08	17.5	211	0;35	211	n	0.10	34.5	321	0;69	321	n	0.14	18.5	110	0;37	110	n	0.11	26.5	224	2;51	224	y	0.10	14.5	138	0;29	138	n	0.11	15.5	123	0;31	123	n	0.11	25.0	204	1;49	204	n	0.14	20.5	129	1;40	129	n	0.12	24.5	188	0;49	188	n	ENSMUSG00000022098.11	Bmp1	chr14	protein_coding	bone morphogenetic protein 1
known_NIR_5815	chr14	70724370	70725910	-	70724370	70727460	A5SS	ENSMUST00000226906.2	known	0.00	0	40	0	40	n	0.15	6	34	6	34	y	0.11	7	55	7	55	y	0.08	3	35	3	35	y	0.10	8	69	8	69	y	0.05	2	37	2	37	y	0.14	8	51	8	51	y	0.12	4	29	4	29	y	0.11	4	31	4	31	y	0.08	4	49	4	49	y	0.02	1	40	1	40	n	0.04	2	49	2	49	y	ENSMUSG00000022098.11	Bmp1	chr14	protein_coding	bone morphogenetic protein 1
known_NIR_5816	chr14	70727691	70727987	-	70727640	70727987	A3SS	ENSMUST00000226906.2	known	0.02	4	222	4	222	y	0.00	0	183	0	183	n	0.01	1	185	1	185	n	0.00	1	210	1	210	n	0.00	0	365	0	365	n	0.00	0	132	0	132	n	0.01	3	267	3	267	y	0.00	0	177	0	177	n	0.01	1	134	1	134	n	0.01	2	236	2	236	y	0.00	0	157	0	157	n	0.00	0	182	0	182	n	ENSMUSG00000022098.11	Bmp1	chr14	protein_coding	bone morphogenetic protein 1
known_NIR_5817	chr14	70745617	70745896	-	70745654	70745896	A3SS	ENSMUST00000226906.2	known	0.68	69	33	69	33	y	0.75	57	19	57	19	y	0.78	89	25	89	25	y	0.81	113	27	113	27	y	0.84	199	38	199	38	y	0.78	69	19	69	19	y	0.78	107	31	107	31	y	0.86	89	15	89	15	y	0.70	51	22	51	22	y	0.78	97	27	97	27	y	0.85	67	12	67	12	y	0.79	84	22	84	22	y	ENSMUSG00000022098.11	Bmp1	chr14	protein_coding	bone morphogenetic protein 1
known_NIR_5818	chr14	70815947	70816352	+	70815550	70816352	A5SS	ENSMUST00000089049.4	known	0.00	0	62	0	62	n	0.00	0	55	0	55	n	0.00	0	170	0	170	n	0.00	0	59	0	59	n	0.00	0	145	0	145	n	0.00	0	102	0	102	n	0.02	2	79	2	79	y	0.00	0	71	0	71	n	0.00	0	62	0	62	n	0.00	0	48	0	48	n	0.00	0	44	0	44	n	0.00	0	71	0	71	n	ENSMUSG00000045211.6	Nudt18	chr14	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 18
known_NIR_5819	chr14	72836582	72840362	-	72836582	72889456	A5SS	ENSMUST00000089017.12	known	0.73	11	4	11	4	y	0.82	14	3	14	3	y	0.77	27	8	27	8	y	0.73	16	6	16	6	y	0.65	22	12	22	12	y	0.71	17	7	17	7	y	0.62	13	8	13	8	y	0.57	17	13	17	13	y	0.62	8	5	8	5	y	0.46	12	14	12	14	y	0.60	12	8	12	8	y	0.70	19	8	19	8	y	ENSMUSG00000033487.15	Fndc3a	chr14	protein_coding	fibronectin type III domain containing 3A
known_NIR_5820	chr14	73376540	73388973	+	73380163	73388973	A5SS&ES	ENSMUST00000163339.8	known	1.00	4	0	4	0	n	1.00	1	0	1	0	n	0.86	12	2	12	2	y	1.00	2	0	2	0	n	1.00	3	0	3	0	n	-	-	-	-	-	-	0.50	2	2	2	2	n	1.00	3	0	3	0	n	1.00	5	0	5	0	n	1.00	2	0	2	0	n	1.00	1	0	1	0	n	1.00	4	0	4	0	n	ENSMUSG00000022106.15	Rcbtb2	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
known_NIR_5821	chr14	73380033	73388973	+	73376540	73388973	A5SS	ENSMUST00000163650.8	known	0.60	6	4	6	4	y	0.75	3	1	3	1	n	0.14	2	12	2	12	y	0.60	3	2	3	2	n	0.67	6	3	6	3	n	1.00	2	0	2	0	n	0.85	11	2	11	2	y	0.50	3	3	3	3	n	0.58	7	5	7	5	y	0.82	9	2	9	2	y	0.00	0	1	0	1	n	0.33	2	4	2	4	n	ENSMUSG00000022106.15	Rcbtb2	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
known_NIR_5822	chr14	73380033	73388973	+	73380163	73388973	A5SS&ES	ENSMUST00000163339.8	known	1.00	6	0	6	0	n	1.00	3	0	3	0	n	0.50	2	2	2	2	n	1.00	3	0	3	0	n	1.00	6	0	6	0	n	1.00	2	0	2	0	n	0.85	11	2	11	2	y	1.00	3	0	3	0	n	1.00	7	0	7	0	n	1.00	9	0	9	0	n	-	-	-	-	-	-	1.00	2	0	2	0	n	ENSMUSG00000022106.15	Rcbtb2	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
known_NIR_5823	chr14	73380262	73388973	+	73376540	73388973	A5SS	ENSMUST00000163650.8	known	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.20	3	12	3	12	y	0.00	0	2	0	2	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000022106.15	Rcbtb2	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
known_NIR_5824	chr14	73380262	73388973	+	73380628	73388973	A5SS	ENSMUST00000163546.8	known	0.00	0	18	0	18	n	0.00	0	9	0	9	n	0.14	3	19	3	19	y	0.00	0	25	0	25	n	0.03	1	28	1	28	n	0.00	0	8	0	8	n	0.00	0	18	0	18	n	0.00	0	5	0	5	n	0.00	0	20	0	20	n	0.04	1	25	1	25	n	0.00	0	19	0	19	n	0.00	0	12	0	12	n	ENSMUSG00000022106.15	Rcbtb2	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
known_NIR_5825	chr14	73380628	73388973	+	73376540	73388973	A5SS	ENSMUST00000163650.8	known	0.82	18	4	18	4	y	0.90	9	1	9	1	n	0.61	19	12	19	12	y	0.93	25	2	25	2	y	0.90	28	3	28	3	y	1.00	8	0	8	0	n	0.90	18	2	18	2	y	0.62	5	3	5	3	n	0.80	20	5	20	5	y	0.93	25	2	25	2	y	0.95	19	1	19	1	n	0.75	12	4	12	4	y	ENSMUSG00000022106.15	Rcbtb2	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
known_NIR_5826	chr14	73380628	73388973	+	73380033	73388973	A5SS	ENSMUST00000170370.8	known	0.75	18	6	18	6	y	0.75	9	3	9	3	y	0.90	19	2	19	2	y	0.89	25	3	25	3	y	0.82	28	6	28	6	y	0.80	8	2	8	2	y	0.62	18	11	18	11	y	0.62	5	3	5	3	n	0.74	20	7	20	7	y	0.74	25	9	25	9	y	1.00	19	0	19	0	n	0.86	12	2	12	2	y	ENSMUSG00000022106.15	Rcbtb2	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
known_NIR_5827	chr14	73380628	73388973	+	73380163	73388973	A5SS	ENSMUST00000163339.8	known	1.00	18	0	18	0	n	1.00	9	0	9	0	n	0.90	19	2	19	2	y	1.00	25	0	25	0	n	1.00	28	0	28	0	n	1.00	8	0	8	0	n	0.90	18	2	18	2	y	1.00	5	0	5	0	n	1.00	20	0	20	0	n	1.00	25	0	25	0	n	1.00	19	0	19	0	n	1.00	12	0	12	0	n	ENSMUSG00000022106.15	Rcbtb2	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
known_NIR_5828	chr14	73380628	73391755	+	73380628	73388973	A3SS&ES	ENSMUST00000022702.13	known	0.05	1	18	1	18	n	0.00	0	9	0	9	n	0.14	3	19	3	19	y	0.07	2	25	2	25	y	0.10	3	28	3	28	y	0.11	1	8	1	8	n	0.10	2	18	2	18	y	0.17	1	5	1	5	n	0.09	2	20	2	20	y	0.07	2	25	2	25	y	0.05	1	19	1	19	n	0.20	3	12	3	12	y	ENSMUSG00000022106.15	Rcbtb2	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
known_NIR_5829	chr14	73380628	73391755	+	73380628;73389055	73388973;73391755	ES	ENSMUST00000163546.8	known	0.03	1	36.5	1	18;55	n	0.00	0	28.0	0	9;47	n	0.07	3	41.0	3	19;63	y	0.04	2	48.0	2	25;71	y	0.06	3	47.0	3	28;66	y	0.05	1	18.5	1	8;29	n	0.04	2	53.0	2	18;88	y	0.05	1	19.0	1	5;33	n	0.05	2	34.5	2	20;49	y	0.04	2	53.0	2	25;81	y	0.03	1	35.5	1	19;52	n	0.07	3	37.5	3	12;63	y	ENSMUSG00000022106.15	Rcbtb2	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
known_NIR_5830	chr14	73380628	73391755	+	73389055	73391755	A5SS&ES	ENSMUST00000163339.8	known	0.02	1	55	1	55	n	0.00	0	47	0	47	n	0.05	3	63	3	63	y	0.03	2	71	2	71	y	0.04	3	66	3	66	y	0.03	1	29	1	29	n	0.02	2	88	2	88	y	0.03	1	33	1	33	n	0.04	2	49	2	49	y	0.02	2	81	2	81	y	0.02	1	52	1	52	n	0.05	3	63	3	63	y	ENSMUSG00000022106.15	Rcbtb2	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
known_NIR_5831	chr14	73381270	73388973	+	73376540	73388973	A5SS	ENSMUST00000163650.8	known	0.73	11	4	11	4	y	0.80	4	1	4	1	n	0.40	8	12	8	12	y	0.75	6	2	6	2	n	0.79	11	3	11	3	y	1.00	2	0	2	0	n	0.85	11	2	11	2	y	0.73	8	3	8	3	y	0.38	3	5	3	5	n	0.87	13	2	13	2	y	0.91	10	1	10	1	n	0.79	15	4	15	4	y	ENSMUSG00000022106.15	Rcbtb2	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
known_NIR_5832	chr14	73381270	73388973	+	73380033	73388973	A5SS	ENSMUST00000170370.8	known	0.65	11	6	11	6	y	0.57	4	3	4	3	n	0.80	8	2	8	2	y	0.67	6	3	6	3	n	0.65	11	6	11	6	y	0.50	2	2	2	2	n	0.50	11	11	11	11	y	0.73	8	3	8	3	y	0.30	3	7	3	7	y	0.59	13	9	13	9	y	1.00	10	0	10	0	n	0.88	15	2	15	2	y	ENSMUSG00000022106.15	Rcbtb2	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
known_NIR_5833	chr14	73381270	73388973	+	73380163	73388973	A5SS	ENSMUST00000163339.8	known	1.00	11	0	11	0	n	1.00	4	0	4	0	n	0.80	8	2	8	2	y	1.00	6	0	6	0	n	1.00	11	0	11	0	n	1.00	2	0	2	0	n	0.85	11	2	11	2	y	1.00	8	0	8	0	n	1.00	3	0	3	0	n	1.00	13	0	13	0	n	1.00	10	0	10	0	n	1.00	15	0	15	0	n	ENSMUSG00000022106.15	Rcbtb2	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
known_NIR_5834	chr14	73381270	73388973	+	73380262	73388973	A5SS	ENSMUST00000170368.8	known	1.00	11	0	11	0	n	1.00	4	0	4	0	n	0.73	8	3	8	3	y	1.00	6	0	6	0	n	0.92	11	1	11	1	n	1.00	2	0	2	0	n	1.00	11	0	11	0	n	1.00	8	0	8	0	n	1.00	3	0	3	0	n	0.93	13	1	13	1	n	1.00	10	0	10	0	n	1.00	15	0	15	0	n	ENSMUSG00000022106.15	Rcbtb2	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
known_NIR_5835	chr14	73381270	73388973	+	73380628	73388973	A5SS	ENSMUST00000163546.8	known	0.38	11	18	11	18	y	0.31	4	9	4	9	y	0.30	8	19	8	19	y	0.19	6	25	6	25	y	0.28	11	28	11	28	y	0.20	2	8	2	8	y	0.38	11	18	11	18	y	0.62	8	5	8	5	y	0.13	3	20	3	20	y	0.34	13	25	13	25	y	0.34	10	19	10	19	y	0.56	15	12	15	12	y	ENSMUSG00000022106.15	Rcbtb2	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
known_NIR_5836	chr14	73391850	73392271	+	73391848	73392271	A5SS	ENSMUST00000163339.8	known	0.04	2	52	2	52	y	0.06	3	49	3	49	y	0.06	4	61	4	61	y	0.06	4	58	4	58	y	0.06	5	75	5	75	y	0.03	1	33	1	33	n	0.08	6	68	6	68	y	0.05	2	35	2	35	y	0.02	1	54	1	54	n	0.01	1	87	1	87	n	0.00	0	57	0	57	n	0.05	3	63	3	63	y	ENSMUSG00000022106.15	Rcbtb2	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
known_NIR_5837	chr14	73392334	73399380	+	73392334;73395885	73395828;73399380	ES	ENSMUST00000163339.8	known	0.86	34	5.5	34	4;7	y	0.94	23	1.5	23	1;2	n	0.96	47	2.0	47	3;1	n	0.92	49	4.0	49	4;4	y	0.96	56	2.5	56	4;1	n	0.98	22	0.5	22	0;1	n	0.91	46	4.5	46	3;6	y	0.92	30	2.5	30	3;2	y	0.88	40	5.5	40	5;6	y	0.90	49	5.5	49	7;4	y	0.88	32	4.5	32	4;5	y	0.91	36	3.5	36	4;3	y	ENSMUSG00000022106.15	Rcbtb2	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
known_NIR_5838	chr14	73399917	73403920	+	73399917	73402124	3pMXE	ENSMUST00000170370.8	known	0.00	0	42	0	42	n	0.00	0	43	0	43	n	0.05	3	56	3	56	y	0.02	1	51	1	51	n	0.06	4	60	4	60	y	0.00	0	42	0	42	n	0.06	3	46	3	46	y	0.00	0	43	0	43	n	0.02	1	54	1	54	n	0.00	0	67	0	67	n	0.04	2	46	2	46	y	0.07	4	56	4	56	y	ENSMUSG00000022106.15	Rcbtb2	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
known_NIR_5839	chr14	73399917	73403920	+	73399917;73402290	73402124;73403920	ES	ENSMUST00000164822.8	known	0.00	0	37.5	0	42;33	n	0.00	0	44.5	0	43;46	n	0.04	3	65.5	3	56;75	y	0.02	1	56.0	1	51;61	n	0.06	4	60.0	4	60;60	y	0.00	0	38.0	0	42;34	n	0.05	3	56.0	3	46;66	y	0.00	0	39.0	0	43;35	n	0.02	1	46.0	1	54;38	n	0.00	0	70.0	0	67;73	n	0.04	2	54.5	2	46;63	y	0.06	4	62.5	4	56;69	y	ENSMUSG00000022106.15	Rcbtb2	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
known_NIR_5840	chr14	73414574	73419899	+	73414574	73415873	A3SS&ES	ENSMUST00000171767.8	known	0.00	0	84	0	84	n	0.01	1	90	1	90	n	0.00	0	84	0	84	n	0.00	0	78	0	78	n	0.00	0	100	0	100	n	0.02	1	55	1	55	n	0.00	0	118	0	118	n	0.04	2	52	2	52	y	0.00	0	88	0	88	n	0.02	3	152	3	152	y	0.02	2	117	2	117	y	0.04	4	110	4	110	y	ENSMUSG00000022106.15	Rcbtb2	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
known_NIR_5841	chr14	73414574	73419899	+	73414574;73416003	73415873;73419899	ES	ENSMUST00000164822.8	known	0.00	0	90.0	0	84;96	n	0.01	1	93.0	1	90;96	n	0.00	0	86.5	0	84;89	n	0.00	0	89.0	0	78;100	n	0.00	0	97.0	0	100;94	n	0.02	1	57.0	1	55;59	n	0.00	0	118.5	0	118;119	n	0.04	2	46.0	2	52;40	y	0.00	0	96.5	0	88;105	n	0.02	3	151.0	3	152;150	y	0.02	2	117.5	2	117;118	y	0.03	4	111.5	4	110;113	y	ENSMUSG00000022106.15	Rcbtb2	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
known_NIR_5842	chr14	73414574	73419899	+	73416003	73419899	A5SS	ENSMUST00000170278.2	known	0.00	0	96	0	96	n	0.01	1	96	1	96	n	0.00	0	89	0	89	n	0.00	0	100	0	100	n	0.00	0	94	0	94	n	0.02	1	59	1	59	n	0.00	0	119	0	119	n	0.05	2	40	2	40	y	0.00	0	105	0	105	n	0.02	3	150	3	150	y	0.02	2	118	2	118	y	0.03	4	113	4	113	y	ENSMUSG00000022106.15	Rcbtb2	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
known_NIR_5843	chr14	73416003	73444632	+	73416003	73419899	3pMXE	ENSMUST00000164822.8	known	0.02	2	96	2	96	y	0.00	0	96	0	96	n	0.00	0	89	0	89	n	0.00	0	100	0	100	n	0.00	0	94	0	94	n	0.00	0	59	0	59	n	0.02	2	119	2	119	y	0.00	0	40	0	40	n	0.00	0	105	0	105	n	0.01	1	150	1	150	n	0.00	0	118	0	118	n	0.00	0	113	0	113	n	ENSMUSG00000022106.15	Rcbtb2	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
known_NIR_5844	chr14	73605867	73613244	-	73605867	73622450	A5SS	ENSMUST00000022704.9	known	0.04	81	2080	81	2080	y	0.04	78	1989	78	1989	y	0.05	55	1162	55	1162	y	0.04	104	2840	104	2840	y	0.04	103	2506	103	2506	y	0.05	40	824	40	824	y	0.05	131	2425	131	2425	y	0.03	37	1102	37	1102	y	0.04	84	2192	84	2192	y	0.05	175	3507	175	3507	y	0.05	129	2414	129	2414	y	0.04	132	2805	132	2805	y	ENSMUSG00000022108.9	Itm2b	chr14	protein_coding	integral membrane protein 2B
known_NIR_5845	chr14	73618226	73622450	-	73605867	73622450	A3SS	ENSMUST00000022704.9	known	0.01	18	2080	18	2080	y	0.01	16	1989	16	1989	y	0.01	8	1162	8	1162	y	0.00	0	2840	0	2840	n	0.00	0	2506	0	2506	n	0.01	7	824	7	824	y	0.00	0	2425	0	2425	n	0.00	0	1102	0	1102	n	0.00	0	2192	0	2192	n	0.01	20	3507	20	3507	y	0.01	20	2414	20	2414	y	0.00	0	2805	0	2805	n	ENSMUSG00000022108.9	Itm2b	chr14	protein_coding	integral membrane protein 2B
known_NIR_5846	chr14	73790337	73797881	+	73767631	73797881	A5SS	ENSMUST00000162691.2	known	1.00	177	0	177	0	n	1.00	91	0	91	0	n	0.99	163	1	163	1	n	1.00	214	0	214	0	n	0.99	204	2	204	2	y	0.99	69	1	69	1	n	1.00	220	0	220	0	n	1.00	94	0	94	0	n	1.00	152	0	152	0	n	1.00	281	0	281	0	n	1.00	167	0	167	0	n	1.00	236	0	236	0	n	ENSMUSG00000022110.14	Sucla2	chr14	protein_coding	succinate-Coenzyme A ligase, ADP-forming, beta subunit
known_NIR_5847	chr14	73832913	73833113	+	73832913	73833138	A3SS	ENSMUST00000022706.7	known	1.00	13	0	13	0	n	1.00	11	0	11	0	n	0.33	1	2	1	2	n	1.00	9	0	9	0	n	0.60	3	2	3	2	n	-	-	-	-	-	-	0.75	6	2	6	2	n	0.67	2	1	2	1	n	1.00	2	0	2	0	n	0.89	24	3	24	3	y	0.78	7	2	7	2	n	0.62	8	5	8	5	y	ENSMUSG00000022110.14	Sucla2	chr14	protein_coding	succinate-Coenzyme A ligase, ADP-forming, beta subunit
known_NIR_5848	chr14	74969961	74973400	+	74969828	74973400	A5SS	ENSMUST00000022573.17	known	0.28	79	201	79	201	y	0.23	57	189	57	189	y	0.15	33	184	33	184	y	0.24	80	250	80	250	y	0.28	88	221	88	221	y	0.15	16	94	16	94	y	0.31	122	270	122	270	y	0.19	30	126	30	126	y	0.24	66	209	66	209	y	0.26	108	305	108	305	y	0.28	77	199	77	199	y	0.24	84	264	84	264	y	ENSMUSG00000021996.17	Esd	chr14	protein_coding	esterase D/formylglutathione hydrolase
known_NIR_5849	chr14	74979578	74982990	+	74979578	74980659	3pMXE	ENSMUST00000176188.2	known	0.00	1	1323	1	1323	n	0.00	3	1209	3	1209	y	0.00	0	718	0	718	n	0.00	0	1410	0	1410	n	0.00	2	1351	2	1351	y	0.00	0	379	0	379	n	0.00	1	1744	1	1744	n	0.00	0	571	0	571	n	0.00	2	1206	2	1206	y	0.00	5	1857	5	1857	y	0.00	1	1478	1	1478	n	0.00	5	1635	5	1635	y	ENSMUSG00000021996.17	Esd	chr14	protein_coding	esterase D/formylglutathione hydrolase
known_NIR_5850	chr14	74979578;74980778	74980659;74982990	+	74979578	74982990	cassetteExon	ENSMUST00000175712.8	known	1.00	673.5	1	1323;24	1	n	1.00	611.5	3	1209;14	3	y	1.00	363.0	0	718;8	0	n	1.00	712.5	0	1410;15	0	n	1.00	680.5	2	1351;10	2	y	1.00	190.5	0	379;2	0	n	1.00	878.0	1	1744;12	1	n	1.00	290.5	0	571;10	0	n	1.00	607.5	2	1206;9	2	y	0.99	941.0	5	1857;25	5	y	1.00	750.0	1	1478;22	1	n	0.99	831.0	5	1635;27	5	y	ENSMUSG00000021996.17	Esd	chr14	protein_coding	esterase D/formylglutathione hydrolase
known_NIR_5851	chr14	74980778	74982990	+	74980778;74982186	74982088;74982990	ES	ENSMUST00000022573.17	known	0.02	24	1165.0	24	1312;1018	y	0.01	14	1125.5	14	1181;1070	y	0.01	8	617.0	8	618;616	y	0.01	15	1135.5	15	1236;1035	y	0.01	10	1267.5	10	1305;1230	y	0.01	2	362.5	2	381;344	y	0.01	12	1470.5	12	1489;1452	y	0.02	10	518.5	10	560;477	y	0.01	9	1104.0	9	1133;1075	y	0.01	25	1670.0	25	1756;1584	y	0.02	22	1337.0	22	1348;1326	y	0.02	27	1493.5	27	1584;1403	y	ENSMUSG00000021996.17	Esd	chr14	protein_coding	esterase D/formylglutathione hydrolase
known_NIR_5852	chr14	74982186	74982990	+	74979578	74982990	A5SS	ENSMUST00000175712.8	known	1.00	1018	1	1018	1	n	1.00	1070	3	1070	3	y	1.00	616	0	616	0	n	1.00	1035	0	1035	0	n	1.00	1230	2	1230	2	y	1.00	344	0	344	0	n	1.00	1452	1	1452	1	n	1.00	477	0	477	0	n	1.00	1075	2	1075	2	y	1.00	1584	5	1584	5	y	1.00	1326	1	1326	1	n	1.00	1403	5	1403	5	y	ENSMUSG00000021996.17	Esd	chr14	protein_coding	esterase D/formylglutathione hydrolase
known_NIR_5853	chr14	74983161	74987085	+	74983157	74987085	A5SS	ENSMUST00000022573.17	known	0.00	0	1193	0	1193	n	0.00	0	1300	0	1300	n	0.00	0	634	0	634	n	0.00	0	1096	0	1096	n	0.00	2	1214	2	1214	y	0.00	0	386	0	386	n	0.00	0	1591	0	1591	n	0.00	0	449	0	449	n	0.00	0	1016	0	1016	n	0.00	0	1700	0	1700	n	0.00	0	1468	0	1468	n	0.00	0	1431	0	1431	n	ENSMUSG00000021996.17	Esd	chr14	protein_coding	esterase D/formylglutathione hydrolase
known_NIR_5854	chr14	75023830	75032737	-	75023830;75032431	75032351;75032737	ES	ENSMUST00000088970.7	known	0.87	13	2.0	13	2;2	y	0.84	8	1.5	8	2;1	n	0.98	21	0.5	21	1;0	n	0.80	4	1.0	4	1;1	n	1.00	9	0.0	9	0;0	n	1.00	3	0.0	3	0;0	n	0.89	8	1.0	8	1;1	n	0.86	3	0.5	3	1;0	n	1.00	5	0.0	5	0;0	n	1.00	15	0.0	15	0;0	n	0.91	10	1.0	10	0;2	n	1.00	13	0.0	13	0;0	n	ENSMUSG00000068015.9	Lrch1	chr14	protein_coding	leucine-rich repeats and calponin homology (CH) domain containing 1
known_NIR_5855	chr14	75369151	75414255	+	75412761	75414255	A5SS&ES	ENSMUST00000134114.8	known	0.33	3	6	3	6	n	0.81	13	3	13	3	y	0.78	21	6	21	6	y	0.57	20	15	20	15	y	0.65	20	11	20	11	y	0.82	9	2	9	2	y	0.71	17	7	17	7	y	0.80	8	2	8	2	y	0.67	16	8	16	8	y	0.67	31	15	31	15	y	0.74	17	6	17	6	y	0.64	14	8	14	8	y	ENSMUSG00000021998.17	Lcp1	chr14	protein_coding	lymphocyte cytosolic protein 1
known_NIR_5856	chr14	75369151	75435517	+	75368644	75435517	A5SS	ENSMUST00000143539.8	known	0.86	19	3	19	3	y	1.00	23	0	23	0	n	0.97	32	1	32	1	n	0.90	43	5	43	5	y	0.95	52	3	52	3	y	1.00	13	0	13	0	n	0.86	43	7	43	7	y	0.85	17	3	17	3	y	1.00	31	0	31	0	n	0.99	67	1	67	1	n	0.93	25	2	25	2	y	0.93	62	5	62	5	y	ENSMUSG00000021998.17	Lcp1	chr14	protein_coding	lymphocyte cytosolic protein 1
known_NIR_5857	chr14	75369151	75435517	+	75369151;75414373	75414255;75435517	ES	ENSMUST00000125833.8	known	0.52	19	17.5	19	3;32	y	0.61	23	14.5	23	13;16	y	0.50	32	31.5	32	21;42	y	0.58	43	31.5	43	20;43	y	0.61	52	33.0	52	20;46	y	0.51	13	12.5	13	9;16	y	0.56	43	33.5	43	17;50	y	0.49	17	18.0	17	8;28	y	0.52	31	29.0	31	16;42	y	0.65	67	35.5	67	31;40	y	0.56	25	19.5	25	17;22	y	0.65	62	33.5	62	14;53	y	ENSMUSG00000021998.17	Lcp1	chr14	protein_coding	lymphocyte cytosolic protein 1
known_NIR_5858	chr14	75369151	75435517	+	75414373	75435517	A5SS&ES	ENSMUST00000134114.8	known	0.37	19	32	19	32	y	0.59	23	16	23	16	y	0.43	32	42	32	42	y	0.50	43	43	43	43	y	0.53	52	46	52	46	y	0.45	13	16	13	16	y	0.46	43	50	43	50	y	0.38	17	28	17	28	y	0.42	31	42	31	42	y	0.63	67	40	67	40	y	0.53	25	22	25	22	y	0.54	62	53	62	53	y	ENSMUSG00000021998.17	Lcp1	chr14	protein_coding	lymphocyte cytosolic protein 1
known_NIR_5859	chr14	75414154	75414255	+	75369151	75414255	A5SS	ENSMUST00000125833.8	known	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.09	2	21	2	21	y	0.00	0	20	0	20	n	0.05	1	20	1	20	n	0.18	2	9	2	9	y	0.15	3	17	3	17	y	0.00	0	8	0	8	n	0.11	2	16	2	16	y	0.06	2	31	2	31	y	0.00	0	17	0	17	n	0.07	1	14	1	14	n	ENSMUSG00000021998.17	Lcp1	chr14	protein_coding	lymphocyte cytosolic protein 1
known_NIR_5860	chr14	75414154	75414255	+	75412761	75414255	A5SS	ENSMUST00000134114.8	known	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.25	2	6	2	6	n	0.00	0	15	0	15	n	0.08	1	11	1	11	n	0.50	2	2	2	2	n	0.30	3	7	3	7	y	0.00	0	2	0	2	n	0.20	2	8	2	8	y	0.12	2	15	2	15	y	0.00	0	6	0	6	n	0.11	1	8	1	8	n	ENSMUSG00000021998.17	Lcp1	chr14	protein_coding	lymphocyte cytosolic protein 1
known_NIR_5861	chr14	75414373	75435517	+	75368644	75435517	A5SS	ENSMUST00000143539.8	known	0.91	32	3	32	3	y	1.00	16	0	16	0	n	0.98	42	1	42	1	n	0.90	43	5	43	5	y	0.94	46	3	46	3	y	1.00	16	0	16	0	n	0.88	50	7	50	7	y	0.90	28	3	28	3	y	1.00	42	0	42	0	n	0.98	40	1	40	1	n	0.92	22	2	22	2	y	0.91	53	5	53	5	y	ENSMUSG00000021998.17	Lcp1	chr14	protein_coding	lymphocyte cytosolic protein 1
known_NIR_5862	chr14	75569658	75573362	+	75569658	75573365	A3SS	ENSMUST00000022577.6	known	0.50	18	18	18	18	y	0.59	35	24	35	24	y	0.57	81	60	81	60	y	0.66	23	12	23	12	y	0.50	24	24	24	24	y	0.49	17	18	17	18	y	0.49	27	28	27	28	y	0.73	24	9	24	9	y	0.42	11	15	11	15	y	0.55	16	13	16	13	y	0.53	9	8	9	8	y	0.55	23	19	23	19	y	ENSMUSG00000022000.12	Zc3h13	chr14	protein_coding	zinc finger CCCH type containing 13
known_NIR_5863	chr14	75575637	75576749	+	75575010	75576749	A5SS	ENSMUST00000022577.6	known	0.00	0	24	0	24	n	0.06	3	49	3	49	y	0.02	3	174	3	174	y	0.09	5	49	5	49	y	0.12	8	57	8	57	y	0.05	1	19	1	19	n	0.26	12	35	12	35	y	0.18	9	42	9	42	y	0.19	6	26	6	26	y	0.28	15	38	15	38	y	0.28	7	18	7	18	y	0.20	6	24	6	24	y	ENSMUSG00000022000.12	Zc3h13	chr14	protein_coding	zinc finger CCCH type containing 13
known_NIR_5864	chr14	76082896	76083643	+	76082896	76083057	3pMXE	ENSMUST00000128889.2	known	0.00	0	6343	0	6343	n	0.00	2	6787	2	6787	y	0.00	0	8364	0	8364	n	0.00	0	6127	0	6127	n	0.00	0	8775	0	8775	n	0.00	0	4362	0	4362	n	0.00	0	8039	0	8039	n	0.00	6	4941	6	4941	y	0.00	0	5113	0	5113	n	0.00	0	7864	0	7864	n	0.00	0	6532	0	6532	n	0.00	0	6606	0	6606	n	ENSMUSG00000060126.15	Tpt1	chr14	protein_coding	tumor protein, translationally-controlled 1
known_NIR_5865	chr14	76082896	76083643	+	76082896;76083130	76083057;76083643	ES	ENSMUST00000110894.9	known	0.00	0	6496.5	0	6343;6650	n	0.00	2	6975.5	2	6787;7164	y	0.00	0	8493.5	0	8364;8623	n	0.00	0	6116.5	0	6127;6106	n	0.00	0	9072.0	0	8775;9369	n	0.00	0	4626.5	0	4362;4891	n	0.00	0	8343.0	0	8039;8647	n	0.00	6	4982.0	6	4941;5023	y	0.00	0	5227.0	0	5113;5341	n	0.00	0	8128.0	0	7864;8392	n	0.00	0	6837.5	0	6532;7143	n	0.00	0	7024.5	0	6606;7443	n	ENSMUSG00000060126.15	Tpt1	chr14	protein_coding	tumor protein, translationally-controlled 1
known_NIR_5866	chr14	76083387	76083643	+	76083130	76083643	A5SS	ENSMUST00000110894.9	known	0.00	0	6650	0	6650	n	0.00	0	7164	0	7164	n	0.00	0	8623	0	8623	n	0.00	0	6106	0	6106	n	0.00	0	9369	0	9369	n	0.00	0	4891	0	4891	n	0.00	0	8647	0	8647	n	0.00	0	5023	0	5023	n	0.00	2	5341	2	5341	y	0.00	0	8392	0	8392	n	0.00	0	7143	0	7143	n	0.00	0	7443	0	7443	n	ENSMUSG00000060126.15	Tpt1	chr14	protein_coding	tumor protein, translationally-controlled 1
known_NIR_5867	chr14	76725364	76742689	+	76656449	76742689	A5SS	ENSMUST00000110888.8	known	1.00	25	0	25	0	n	0.96	24	1	24	1	n	0.95	37	2	37	2	y	0.98	46	1	46	1	n	0.98	41	1	41	1	n	1.00	12	0	12	0	n	0.91	43	4	43	4	y	1.00	24	0	24	0	n	1.00	36	0	36	0	n	1.00	58	0	58	0	n	1.00	39	0	39	0	n	1.00	24	0	24	0	n	ENSMUSG00000022010.20	Tsc22d1	chr14	protein_coding	TSC22 domain family, member 1
known_NIR_5868	chr14	76726115	76742689	+	76656449	76742689	A5SS	ENSMUST00000110888.8	known	1.00	4	0	4	0	n	0.75	3	1	3	1	n	0.00	0	2	0	2	n	0.94	16	1	16	1	n	0.86	6	1	6	1	n	-	-	-	-	-	-	0.60	6	4	6	4	y	1.00	2	0	2	0	n	1.00	7	0	7	0	n	1.00	26	0	26	0	n	1.00	8	0	8	0	n	1.00	2	0	2	0	n	ENSMUSG00000022010.20	Tsc22d1	chr14	protein_coding	TSC22 domain family, member 1
known_NIR_5869	chr14	76726115	76742689	+	76725364	76742689	A5SS	ENSMUST00000142683.8	known	0.14	4	25	4	25	y	0.11	3	24	3	24	y	0.00	0	37	0	37	n	0.26	16	46	16	46	y	0.13	6	41	6	41	y	0.00	0	12	0	12	n	0.12	6	43	6	43	y	0.08	2	24	2	24	y	0.16	7	36	7	36	y	0.31	26	58	26	58	y	0.17	8	39	8	39	y	0.08	2	24	2	24	y	ENSMUSG00000022010.20	Tsc22d1	chr14	protein_coding	TSC22 domain family, member 1
known_NIR_5870	chr14	7673686	7678599	-	7673686;7675813	7675706;7678599	ES	ENSMUST00000224952.3	known	0.00	0	5.0	0	7;3	n	0.00	0	3.0	0	5;1	n	0.00	0	12.0	0	9;15	n	0.12	1	7.5	1	9;6	n	0.00	0	9.5	0	12;7	n	0.00	0	0.5	0	0;1	n	0.14	1	6.0	1	6;6	n	0.00	0	4.5	0	2;7	n	0.00	0	5.0	0	4;6	n	0.18	1	4.5	1	7;2	n	0.00	0	7.0	0	9;5	n	0.15	2	11.0	2	9;13	y	ENSMUSG00000021733.12	Slc4a7	chr14	protein_coding	solute carrier family 4, sodium bicarbonate cotransporter, member 7
known_NIR_5871	chr14	76742281	76742689	+	76656449	76742689	A5SS	ENSMUST00000110888.8	known	1.00	29	0	29	0	n	0.97	33	1	33	1	n	0.96	53	2	53	2	y	0.97	37	1	37	1	n	0.99	80	1	80	1	n	1.00	28	0	28	0	n	0.95	84	4	84	4	y	1.00	33	0	33	0	n	1.00	50	0	50	0	n	1.00	106	0	106	0	n	1.00	71	0	71	0	n	1.00	33	0	33	0	n	ENSMUSG00000022010.20	Tsc22d1	chr14	protein_coding	TSC22 domain family, member 1
known_NIR_5872	chr14	76742281	76742689	+	76725364	76742689	A5SS	ENSMUST00000142683.8	known	0.54	29	25	29	25	y	0.58	33	24	33	24	y	0.59	53	37	53	37	y	0.45	37	46	37	46	y	0.66	80	41	80	41	y	0.70	28	12	28	12	y	0.66	84	43	84	43	y	0.58	33	24	33	24	y	0.58	50	36	50	36	y	0.65	106	58	106	58	y	0.65	71	39	71	39	y	0.58	33	24	33	24	y	ENSMUSG00000022010.20	Tsc22d1	chr14	protein_coding	TSC22 domain family, member 1
known_NIR_5873	chr14	76742281	76742689	+	76726115	76742689	A5SS	ENSMUST00000101618.9	known	0.88	29	4	29	4	y	0.92	33	3	33	3	y	1.00	53	0	53	0	n	0.70	37	16	37	16	y	0.93	80	6	80	6	y	1.00	28	0	28	0	n	0.93	84	6	84	6	y	0.94	33	2	33	2	y	0.88	50	7	50	7	y	0.80	106	26	106	26	y	0.90	71	8	71	8	y	0.94	33	2	33	2	y	ENSMUSG00000022010.20	Tsc22d1	chr14	protein_coding	TSC22 domain family, member 1
known_NIR_5874	chr14	77306389	77329108	+	77306389	77348847	A3SS	ENSMUST00000095625.11	known	1.00	17	0	17	0	n	0.92	11	1	11	1	n	1.00	39	0	39	0	n	0.88	7	1	7	1	n	0.89	25	3	25	3	y	1.00	28	0	28	0	n	1.00	18	0	18	0	n	0.96	23	1	23	1	n	1.00	13	0	13	0	n	1.00	6	0	6	0	n	0.81	13	3	13	3	y	0.91	29	3	29	3	y	ENSMUSG00000034795.15	Ccdc122	chr14	protein_coding	coiled-coil domain containing 122
known_NIR_5875	chr14	77330326	77348847	+	77306389	77348847	A5SS	ENSMUST00000095625.11	known	1.00	15	0	15	0	n	0.92	12	1	12	1	n	1.00	49	0	49	0	n	0.92	11	1	11	1	n	0.89	25	3	25	3	y	1.00	45	0	45	0	n	1.00	16	0	16	0	n	0.95	21	1	21	1	n	1.00	14	0	14	0	n	1.00	16	0	16	0	n	0.86	19	3	19	3	y	0.90	27	3	27	3	y	ENSMUSG00000034795.15	Ccdc122	chr14	protein_coding	coiled-coil domain containing 122
known_NIR_5876	chr14	78063910;78065015	78064895;78077608	-	78063910	78077608	cassetteExon	ENSMUST00000226459.2	known	0.01	2.0	185	3;1	185	n	0.01	1.5	218	2;1	218	n	0.00	0.5	198	1;0	198	n	0.00	0.0	193	0;0	193	n	0.00	0.5	248	0;1	248	n	0.00	0.0	104	0;0	104	n	0.01	3.0	225	2;4	225	y	0.00	0.0	137	0;0	137	n	0.00	0.0	153	0;0	153	n	0.00	0.0	258	0;0	258	n	0.01	1.5	232	2;1	232	n	0.00	0.5	227	1;0	227	n	ENSMUSG00000022013.5	Dnajc15	chr14	protein_coding	DnaJ heat shock protein family (Hsp40) member C15
known_NIR_5877	chr14	78090411	78112238	-	78090411;78094430	78094379;78112238	ES	ENSMUST00000226459.2	known	0.02	3	135.0	3	157;113	y	0.01	1	155.5	1	182;129	n	0.00	0	167.5	0	182;153	n	0.00	0	153.0	0	161;145	n	0.01	3	216.0	3	243;189	y	0.00	0	99.0	0	111;87	n	0.02	4	202.5	4	216;189	y	0.02	2	95.0	2	103;87	y	0.01	2	133.5	2	141;126	y	0.01	2	176.5	2	198;155	y	0.03	4	140.0	4	156;124	y	0.02	3	178.0	3	204;152	y	ENSMUSG00000022013.5	Dnajc15	chr14	protein_coding	DnaJ heat shock protein family (Hsp40) member C15
known_NIR_5878	chr14	78739676	78745165	-	78739676;78740462	78740379;78745165	ES	ENSMUST00000123853.9	known	0.29	5	12.0	5	21;3	y	0.30	5	11.5	5	18;5	y	0.17	6	29.0	6	40;18	y	0.33	6	12.0	6	17;7	y	0.35	10	18.5	10	28;9	y	0.25	8	23.5	8	25;22	y	0.30	10	23.0	10	31;15	y	0.00	0	15.0	0	26;4	n	0.39	7	11.0	7	17;5	y	0.43	9	12.0	9	18;6	y	0.30	6	14.0	6	23;5	y	0.19	6	25.0	6	34;16	y	ENSMUSG00000022016.18	Akap11	chr14	protein_coding	A kinase (PRKA) anchor protein 11
known_NIR_5879	chr14	79187017	79193952	+	79187017	79219676	A3SS	ENSMUST00000040990.7	known	0.03	2	58	2	58	y	0.09	6	60	6	60	y	0.03	5	154	5	154	y	0.04	6	129	6	129	y	0.04	7	160	7	160	y	0.09	10	96	10	96	y	0.04	7	164	7	164	y	0.03	3	106	3	106	y	0.01	1	79	1	79	n	0.00	0	186	0	186	n	0.02	2	85	2	85	y	0.02	2	97	2	97	y	ENSMUSG00000058997.9	Vwa8	chr14	protein_coding	von Willebrand factor A domain containing 8
known_NIR_5880	chr14	79582548	79588813	-	79582548	79588129	5pMXE	ENSMUST00000227775.2	known	0.72	13	5	13	5	y	0.55	6	5	6	5	y	0.68	13	6	13	6	y	0.78	14	4	14	4	y	0.74	14	5	14	5	y	0.87	13	2	13	2	y	0.82	9	2	9	2	y	0.64	7	4	7	4	y	0.75	9	3	9	3	y	0.76	13	4	13	4	y	1.00	14	0	14	0	n	0.87	13	2	13	2	y	ENSMUSG00000022020.16	Naa16	chr14	protein_coding	N(alpha)-acetyltransferase 16, NatA auxiliary subunit
known_NIR_5881	chr14	79582548;79588270	79588129;79588813	-	79582548	79588813	cassetteExon	ENSMUST00000022597.15	known	0.30	5.5	13	5;6	13	y	0.37	3.5	6	5;2	6	y	0.32	6.0	13	6;6	13	y	0.24	4.5	14	4;5	14	y	0.33	7.0	14	5;9	14	y	0.13	2.0	13	2;2	13	y	0.18	2.0	9	2;2	9	y	0.26	2.5	7	4;1	7	n	0.33	4.5	9	3;6	9	y	0.19	3.0	13	4;2	13	y	0.07	1.0	14	0;2	14	n	0.10	1.5	13	2;1	13	n	ENSMUSG00000022020.16	Naa16	chr14	protein_coding	N(alpha)-acetyltransferase 16, NatA auxiliary subunit
known_NIR_5882	chr14	79619069	79620676	-	79619069	79624462	A5SS	ENSMUST00000169500.2	known	0.90	9	1	9	1	n	1.00	3	0	3	0	n	0.93	13	1	13	1	n	1.00	13	0	13	0	n	0.85	11	2	11	2	y	0.75	3	1	3	1	n	1.00	11	0	11	0	n	1.00	4	0	4	0	n	1.00	6	0	6	0	n	0.80	4	1	4	1	n	0.88	7	1	7	1	n	1.00	5	0	5	0	n	ENSMUSG00000022020.16	Naa16	chr14	protein_coding	N(alpha)-acetyltransferase 16, NatA auxiliary subunit
known_NIR_5883	chr14	79622198	79624462	-	79619069	79624462	A3SS	ENSMUST00000169500.2	known	0.83	5	1	5	1	n	1.00	3	0	3	0	n	0.86	6	1	6	1	n	1.00	8	0	8	0	n	0.89	17	2	17	2	y	0.67	2	1	2	1	n	1.00	9	0	9	0	n	1.00	6	0	6	0	n	1.00	5	0	5	0	n	0.92	12	1	12	1	n	0.50	1	1	1	1	n	1.00	6	0	6	0	n	ENSMUSG00000022020.16	Naa16	chr14	protein_coding	N(alpha)-acetyltransferase 16, NatA auxiliary subunit
known_NIR_5884	chr14	79753210	79773563	+	79719077	79773563	A5SS	ENSMUST00000040131.13	known	0.29	2	5	2	5	n	0.00	0	1	0	1	n	0.08	1	11	1	11	n	0.12	3	22	3	22	y	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.17	2	10	2	10	y	0.12	1	7	1	7	n	0.25	2	6	2	6	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	ENSMUSG00000036461.17	Elf1	chr14	protein_coding	E74-like factor 1
known_NIR_5885	chr14	79798367	79804590	+	79798367;79803012	79802902;79804590	ES	ENSMUST00000040131.13	known	0.00	0	17.5	0	19;16	n	0.00	0	6.5	0	9;4	n	0.11	2	16.0	2	20;12	y	0.00	0	17.5	0	22;13	n	0.17	3	14.5	3	15;14	y	0.00	0	11.0	0	16;6	n	0.00	0	13.0	0	15;11	n	0.00	0	11.0	0	17;5	n	0.18	2	9.0	2	14;4	y	0.00	0	19.5	0	20;19	n	0.12	1	7.5	1	8;7	n	0.00	0	16.0	0	12;20	n	ENSMUSG00000036461.17	Elf1	chr14	protein_coding	E74-like factor 1
known_NIR_5886	chr14	79875614	79879336	-	79875617	79879336	A3SS	ENSMUST00000165835.8	known	0.17	1	5	1	5	n	0.00	0	13	0	13	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.08	1	11	1	11	n	0.00	0	2	0	2	n	0.19	5	22	5	22	y	0.11	4	31	4	31	y	0.09	4	43	4	43	y	0.27	4	11	4	11	y	ENSMUSG00000022025.14	Cnmd	chr14	protein_coding	chondromodulin
known_NIR_5887	chr14	8349776	8353170	+	8349776	8352793	A3SS&ES	ENSMUST00000022256.5	known	0.00	0	185	0	185	n	0.00	0	189	0	189	n	0.01	3	212	3	212	y	0.01	3	254	3	254	y	0.03	8	252	8	252	y	0.00	0	85	0	85	n	0.02	7	279	7	279	y	0.00	0	109	0	109	n	0.00	0	196	0	196	n	0.00	0	272	0	272	n	0.00	0	202	0	202	n	0.00	0	283	0	283	n	ENSMUSG00000021737.5	Psmd6	chr14	protein_coding	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6
known_NIR_5888	chr14	8366456	8368862	-	8366456	8368095	A5SS&ES	ENSMUST00000224315.2	known	0.71	15	6	15	6	y	0.82	9	2	9	2	y	0.85	34	6	34	6	y	0.81	25	6	25	6	y	0.86	25	4	25	4	y	0.86	6	1	6	1	n	0.80	16	4	16	4	y	0.83	19	4	19	4	y	0.64	9	5	9	5	y	0.82	31	7	31	7	y	0.82	18	4	18	4	y	0.90	52	6	52	6	y	ENSMUSG00000021738.6	Atxn7	chr14	protein_coding	ataxin 7
known_NIR_5889	chr14	8366456;8368161	8368095;8368862	-	8366456	8368862	cassetteExon	ENSMUST00000022257.4	known	0.25	5.0	15	6;4	15	y	0.22	2.5	9	2;3	9	y	0.08	3.0	34	6;0	34	n	0.17	5.0	25	6;4	25	y	0.11	3.0	25	4;2	25	y	0.20	1.5	6	1;2	6	n	0.18	3.5	16	4;3	16	y	0.16	3.5	19	4;3	19	y	0.33	4.5	9	5;4	9	y	0.16	6.0	31	7;5	31	y	0.18	4.0	18	4;4	18	y	0.10	6.0	52	6;6	52	y	ENSMUSG00000021738.6	Atxn7	chr14	protein_coding	ataxin 7
known_NIR_5890	chr14	8433374	8456108	-	8416844	8456108	A3SS	ENSMUST00000022257.4	known	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	22	0	22	n	0.05	1	20	1	20	n	0.03	1	29	1	29	n	0.00	0	12	0	12	n	0.14	2	12	2	12	y	0.00	0	19	0	19	n	0.00	0	18	0	18	n	0.09	1	10	1	10	n	0.00	0	10	0	10	n	0.20	3	12	3	12	y	ENSMUSG00000021738.6	Atxn7	chr14	protein_coding	ataxin 7
known_NIR_5891	chr14	8508578	8515107	+	8507969	8515107	A5SS	ENSMUST00000225325.2	known	0.98	53	1	53	1	n	1.00	48	0	48	0	n	1.00	50	0	50	0	n	0.99	66	1	66	1	n	1.00	57	0	57	0	n	0.94	34	2	34	2	y	1.00	65	0	65	0	n	1.00	33	0	33	0	n	1.00	41	0	41	0	n	1.00	48	0	48	0	n	1.00	36	0	36	0	n	0.96	46	2	46	2	y	ENSMUSG00000053453.10	Thoc7	chr14	protein_coding	THO complex 7
known_NIR_5892	chr14	8508578	8515107	+	8512303	8515107	5pMXE	ENSMUST00000226008.2	known	0.90	53	6	53	6	y	0.87	48	7	48	7	y	0.74	50	18	50	18	y	0.87	66	10	66	10	y	0.79	57	15	57	15	y	0.79	34	9	34	9	y	0.82	65	14	65	14	y	0.65	33	18	33	18	y	0.91	41	4	41	4	y	0.83	48	10	48	10	y	0.75	36	12	36	12	y	0.79	46	12	46	12	y	ENSMUSG00000053453.10	Thoc7	chr14	protein_coding	THO complex 7
known_NIR_5893	chr14	8508578;8512209	8512132;8515107	+	8508578	8515107	cassetteExon	ENSMUST00000065865.10	known	0.10	6.0	53	9;3	53	y	0.15	8.5	48	8;9	48	y	0.15	9.0	50	10;8	50	y	0.10	7.5	66	2;13	66	y	0.19	13.5	57	18;9	57	y	0.13	5.0	34	5;5	34	y	0.14	11.0	65	13;9	65	y	0.15	6.0	33	9;3	33	y	0.10	4.5	41	5;4	41	y	0.19	11.0	48	11;11	48	y	0.15	6.5	36	8;5	36	y	0.19	10.5	46	8;13	46	y	ENSMUSG00000053453.10	Thoc7	chr14	protein_coding	THO complex 7
known_NIR_5894	chr14	8508578;8512303	8512132;8515107	+	8508578	8515107	cassetteExon	ENSMUST00000065865.10	known	0.12	7.5	53	9;6	53	y	0.14	7.5	48	8;7	48	y	0.22	14.0	50	10;18	50	y	0.08	6.0	66	2;10	66	y	0.22	16.5	57	18;15	57	y	0.17	7.0	34	5;9	34	y	0.17	13.5	65	13;14	65	y	0.29	13.5	33	9;18	33	y	0.10	4.5	41	5;4	41	y	0.18	10.5	48	11;10	48	y	0.22	10.0	36	8;12	36	y	0.18	10.0	46	8;12	46	y	ENSMUSG00000053453.10	Thoc7	chr14	protein_coding	THO complex 7
known_NIR_5895	chr14	8508895	8515107	+	8508578	8515107	A5SS	ENSMUST00000065865.10	known	0.00	0	53	0	53	n	0.00	0	48	0	48	n	0.00	0	50	0	50	n	0.03	2	66	2	66	y	0.00	0	57	0	57	n	0.00	0	34	0	34	n	0.02	1	65	1	65	n	0.00	0	33	0	33	n	0.00	0	41	0	41	n	0.02	1	48	1	48	n	0.00	0	36	0	36	n	0.00	0	46	0	46	n	ENSMUSG00000053453.10	Thoc7	chr14	protein_coding	THO complex 7
known_NIR_5896	chr14	8508895	8515107	+	8512209	8515107	A5SS&ES	ENSMUST00000225401.2	known	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.13	2	13	2	13	y	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.10	1	9	1	9	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.08	1	11	1	11	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	ENSMUSG00000053453.10	Thoc7	chr14	protein_coding	THO complex 7
known_NIR_5897	chr14	8508895	8515107	+	8512303	8515107	A5SS&ES	ENSMUST00000225202.2	known	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	18	0	18	n	0.17	2	10	2	10	y	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.07	1	14	1	14	n	0.00	0	18	0	18	n	0.00	0	4	0	4	n	0.09	1	10	1	10	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	ENSMUSG00000053453.10	Thoc7	chr14	protein_coding	THO complex 7
known_NIR_5898	chr14	8512209	8515107	+	8507969	8515107	A5SS	ENSMUST00000225325.2	known	0.75	3	1	3	1	n	1.00	9	0	9	0	n	1.00	8	0	8	0	n	0.93	13	1	13	1	n	1.00	9	0	9	0	n	0.71	5	2	5	2	n	1.00	9	0	9	0	n	1.00	3	0	3	0	n	1.00	4	0	4	0	n	1.00	11	0	11	0	n	1.00	5	0	5	0	n	0.87	13	2	13	2	y	ENSMUSG00000053453.10	Thoc7	chr14	protein_coding	THO complex 7
known_NIR_5899	chr14	8512303	8515107	+	8507969	8515107	A5SS	ENSMUST00000225325.2	known	0.86	6	1	6	1	n	1.00	7	0	7	0	n	1.00	18	0	18	0	n	0.91	10	1	10	1	n	1.00	15	0	15	0	n	0.82	9	2	9	2	y	1.00	14	0	14	0	n	1.00	18	0	18	0	n	1.00	4	0	4	0	n	1.00	10	0	10	0	n	1.00	12	0	12	0	n	0.86	12	2	12	2	y	ENSMUSG00000053453.10	Thoc7	chr14	protein_coding	THO complex 7
known_NIR_5900	chr14	8512303	8515107	+	8512209	8515107	A5SS	ENSMUST00000225401.2	known	0.67	6	3	6	3	n	0.44	7	9	7	9	y	0.69	18	8	18	8	y	0.43	10	13	10	13	y	0.62	15	9	15	9	y	0.64	9	5	9	5	y	0.61	14	9	14	9	y	0.86	18	3	18	3	y	0.50	4	4	4	4	n	0.48	10	11	10	11	y	0.71	12	5	12	5	y	0.48	12	13	12	13	y	ENSMUSG00000053453.10	Thoc7	chr14	protein_coding	THO complex 7
known_NIR_5901	chr14	8512701	8515107	+	8507969	8515107	A5SS	ENSMUST00000225325.2	known	0.96	25	1	25	1	n	1.00	16	0	16	0	n	1.00	14	0	14	0	n	0.96	25	1	25	1	n	1.00	23	0	23	0	n	0.71	5	2	5	2	n	1.00	21	0	21	0	n	1.00	15	0	15	0	n	1.00	24	0	24	0	n	1.00	35	0	35	0	n	1.00	28	0	28	0	n	0.94	31	2	31	2	y	ENSMUSG00000053453.10	Thoc7	chr14	protein_coding	THO complex 7
known_NIR_5902	chr14	8512701	8515107	+	8508578	8515107	A5SS	ENSMUST00000065865.10	known	0.32	25	53	25	53	y	0.25	16	48	16	48	y	0.22	14	50	14	50	y	0.27	25	66	25	66	y	0.29	23	57	23	57	y	0.13	5	34	5	34	y	0.24	21	65	21	65	y	0.31	15	33	15	33	y	0.37	24	41	24	41	y	0.42	35	48	35	48	y	0.44	28	36	28	36	y	0.40	31	46	31	46	y	ENSMUSG00000053453.10	Thoc7	chr14	protein_coding	THO complex 7
known_NIR_5903	chr14	8512701	8515107	+	8508895	8515107	A5SS	ENSMUST00000225590.2	known	1.00	25	0	25	0	n	1.00	16	0	16	0	n	1.00	14	0	14	0	n	0.93	25	2	25	2	y	1.00	23	0	23	0	n	1.00	5	0	5	0	n	0.95	21	1	21	1	n	1.00	15	0	15	0	n	1.00	24	0	24	0	n	0.97	35	1	35	1	n	1.00	28	0	28	0	n	1.00	31	0	31	0	n	ENSMUSG00000053453.10	Thoc7	chr14	protein_coding	THO complex 7
known_NIR_5904	chr14	8512701	8515107	+	8512209	8515107	A5SS	ENSMUST00000225401.2	known	0.89	25	3	25	3	y	0.64	16	9	16	9	y	0.64	14	8	14	8	y	0.66	25	13	25	13	y	0.72	23	9	23	9	y	0.50	5	5	5	5	y	0.70	21	9	21	9	y	0.83	15	3	15	3	y	0.86	24	4	24	4	y	0.76	35	11	35	11	y	0.85	28	5	28	5	y	0.70	31	13	31	13	y	ENSMUSG00000053453.10	Thoc7	chr14	protein_coding	THO complex 7
known_NIR_5905	chr14	8512701	8515107	+	8512303	8515107	A5SS	ENSMUST00000225202.2	known	0.81	25	6	25	6	y	0.70	16	7	16	7	y	0.44	14	18	14	18	y	0.71	25	10	25	10	y	0.61	23	15	23	15	y	0.36	5	9	5	9	y	0.60	21	14	21	14	y	0.45	15	18	15	18	y	0.86	24	4	24	4	y	0.78	35	10	35	10	y	0.70	28	12	28	12	y	0.72	31	12	31	12	y	ENSMUSG00000053453.10	Thoc7	chr14	protein_coding	THO complex 7
known_NIR_5906	chr14	8515197	8516225	+	8515224	8516225	A5SS	ENSMUST00000225325.2	known	0.02	3	192	3	192	y	0.05	9	187	9	187	y	0.04	9	202	9	202	y	0.02	4	222	4	222	y	0.04	9	235	9	235	y	0.01	1	84	1	84	n	0.01	3	236	3	236	y	0.00	0	120	0	120	n	0.02	3	150	3	150	y	0.02	4	252	4	252	y	0.02	4	181	4	181	y	0.03	6	224	6	224	y	ENSMUSG00000053453.10	Thoc7	chr14	protein_coding	THO complex 7
known_NIR_5907	chr14	8518557	8519562	+	8518557	8519398	3pMXE	ENSMUST00000225590.2	known	0.03	7	226	7	226	y	0.09	21	226	21	226	y	0.05	10	206	10	206	y	0.05	10	175	10	175	y	0.05	11	231	11	231	y	0.02	2	131	2	131	y	0.06	15	225	15	225	y	0.05	6	121	6	121	y	0.04	7	192	7	192	y	0.08	20	244	20	244	y	0.06	13	203	13	203	y	0.07	20	253	20	253	y	ENSMUSG00000053453.10	Thoc7	chr14	protein_coding	THO complex 7
known_NIR_5908	chr14	8518557	8519562	+	8518557;8519464	8519398;8519562	ES	ENSMUST00000225325.2	known	0.03	7	223.5	7	226;221	y	0.08	21	245.5	21	226;265	y	0.04	10	230.0	10	206;254	y	0.05	10	184.5	10	175;194	y	0.04	11	238.0	11	231;245	y	0.02	2	125.0	2	131;119	y	0.06	15	251.5	15	225;278	y	0.05	6	119.5	6	121;118	y	0.03	7	205.5	7	192;219	y	0.07	20	258.0	20	244;272	y	0.06	13	213.0	13	203;223	y	0.07	20	266.0	20	253;279	y	ENSMUSG00000053453.10	Thoc7	chr14	protein_coding	THO complex 7
known_NIR_5909	chr14	87709378	87709512	+	87696258	87709512	A5SS	ENSMUST00000169504.8	known	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.33	1	2	1	2	n	0.15	3	17	3	17	y	0.00	0	9	0	9	n	0.00	0	12	0	12	n	ENSMUSG00000022019.17	Tdrd3	chr14	protein_coding	tudor domain containing 3
known_NIR_5910	chr14	99273946	99283430	-	99273946	99277951	A5SS&ES	ENSMUST00000227948.2	known	0.12	6	43	6	43	y	0.12	4	30	4	30	y	0.06	2	34	2	34	y	0.11	6	50	6	50	y	0.05	3	61	3	61	y	0.09	2	21	2	21	y	0.04	2	47	2	47	y	0.00	0	34	0	34	n	0.03	1	29	1	29	n	0.11	5	41	5	41	y	0.00	0	24	0	24	n	0.02	1	53	1	53	n	ENSMUSG00000033186.10	Mzt1	chr14	protein_coding	mitotic spindle organizing protein 1
known_NIR_5911	chr14	99273946	99283430	-	99273946;99278096	99277951;99283430	ES	ENSMUST00000042662.10	known	0.14	6	36.5	6	43;30	y	0.14	4	24.5	4	30;19	y	0.07	2	28.0	2	34;22	y	0.12	6	44.0	6	50;38	y	0.06	3	46.5	3	61;32	y	0.11	2	16.5	2	21;12	y	0.05	2	41.0	2	47;35	y	0.00	0	29.5	0	34;25	n	0.04	1	22.5	1	29;16	n	0.12	5	35.0	5	41;29	y	0.00	0	21.5	0	24;19	n	0.02	1	47.5	1	53;42	n	ENSMUSG00000033186.10	Mzt1	chr14	protein_coding	mitotic spindle organizing protein 1
known_NIR_5912	chr15	100126486	100130614	+	100125963	100130614	A5SS	ENSMUST00000023769.11	known	0.02	1	44	1	44	n	0.00	0	27	0	27	n	0.00	0	79	0	79	n	0.15	10	56	10	56	y	0.00	0	71	0	71	n	0.00	0	53	0	53	n	0.04	3	77	3	77	y	0.13	7	46	7	46	y	0.04	2	50	2	50	y	0.04	3	66	3	66	y	0.09	4	43	4	43	y	0.10	7	62	7	62	y	ENSMUSG00000023027.14	Atf1	chr15	protein_coding	activating transcription factor 1
known_NIR_5913	chr15	100130712	100149950	+	100130712;100143226	100143126;100149950	ES	ENSMUST00000023769.11	known	0.00	0	43.0	0	29;57	n	0.00	0	42.0	0	36;48	n	0.00	0	86.0	0	78;94	n	0.02	1	62.5	1	61;64	n	0.00	0	83.0	0	73;93	n	0.00	0	52.0	0	44;60	n	0.00	0	67.0	0	70;64	n	0.07	3	37.5	3	33;42	y	0.00	0	50.5	0	47;54	n	0.00	0	76.5	0	74;79	n	0.00	0	48.5	0	43;54	n	0.02	1	64.5	1	64;65	n	ENSMUSG00000023027.14	Atf1	chr15	protein_coding	activating transcription factor 1
known_NIR_5914	chr15	100152394	100157701	+	100152394	100157696	A3SS	ENSMUST00000023769.11	known	0.04	2	51	2	51	y	0.00	0	41	0	41	n	0.02	3	132	3	132	y	0.00	0	77	0	77	n	0.02	2	118	2	118	y	0.00	0	46	0	46	n	0.00	0	101	0	101	n	0.00	0	68	0	68	n	0.00	0	70	0	70	n	0.03	3	107	3	107	y	0.00	0	73	0	73	n	0.00	0	109	0	109	n	ENSMUSG00000023027.14	Atf1	chr15	protein_coding	activating transcription factor 1
known_NIR_5915	chr15	100202143	100202851	+	100202143	100202804	A3SS	ENSMUST00000230472.2	known	0.28	7	18	7	18	y	0.00	0	23	0	23	n	0.25	5	15	5	15	y	0.00	0	40	0	40	n	0.00	0	32	0	32	n	0.10	2	19	2	19	y	0.20	8	33	8	33	y	0.30	3	7	3	7	y	0.00	0	33	0	33	n	0.14	5	31	5	31	y	0.00	0	27	0	27	n	0.00	0	25	0	25	n	ENSMUSG00000054619.8	Mettl7a1	chr15	protein_coding	methyltransferase like 7A1
known_NIR_5916	chr15	100202143	100202851	+	100202143	100202878	A3SS	ENSMUST00000229574.2	known	0.78	7	2	7	2	n	-	-	-	-	-	-	1.00	5	0	5	0	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.50	2	2	2	2	n	0.80	8	2	8	2	y	0.50	3	3	3	3	n	0.00	0	3	0	3	n	0.50	5	5	5	5	y	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000054619.8	Mettl7a1	chr15	protein_coding	methyltransferase like 7A1
known_NIR_5917	chr15	100202143	100202878	+	100202143	100202804	A3SS	ENSMUST00000230472.2	known	0.10	2	18	2	18	y	0.00	0	23	0	23	n	0.00	0	15	0	15	n	0.07	3	40	3	40	y	0.09	3	32	3	32	y	0.10	2	19	2	19	y	0.06	2	33	2	33	y	0.30	3	7	3	7	y	0.08	3	33	3	33	y	0.14	5	31	5	31	y	0.10	3	27	3	27	y	0.00	0	25	0	25	n	ENSMUSG00000054619.8	Mettl7a1	chr15	protein_coding	methyltransferase like 7A1
known_NIR_5918	chr15	100203225	100226099	+	100203225	100210875	3pMXE	ENSMUST00000230472.2	known	0.00	0	704	0	704	n	0.00	0	524	0	524	n	0.00	0	173	0	173	n	0.00	1	906	1	906	n	0.00	2	812	2	812	y	0.00	0	195	0	195	n	0.01	4	792	4	792	y	0.00	0	281	0	281	n	0.00	0	771	0	771	n	0.00	3	989	3	989	y	0.00	0	860	0	860	n	0.00	0	1007	0	1007	n	ENSMUSG00000054619.8	Mettl7a1	chr15	protein_coding	methyltransferase like 7A1
known_NIR_5919	chr15	100308112	100310115	-	100308112	100310072	A5SS	ENSMUST00000023774.12	known	0.07	2	27	2	27	y	0.00	0	25	0	25	n	0.01	2	203	2	203	y	0.03	1	31	1	31	n	0.06	5	79	5	79	y	0.01	1	109	1	109	n	0.06	4	63	4	63	y	0.06	9	140	9	140	y	0.07	2	25	2	25	y	0.09	5	51	5	51	y	0.07	2	27	2	27	y	0.13	6	41	6	41	y	ENSMUSG00000023030.17	Slc11a2	chr15	protein_coding	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2
known_NIR_5920	chr15	100367019	100367566	+	100367126	100367566	A5SS	ENSMUST00000037001.10	known	0.14	3	19	3	19	y	0.27	8	22	8	22	y	0.26	9	25	9	25	y	0.31	14	31	14	31	y	0.26	9	25	9	25	y	0.45	10	12	10	12	y	0.44	17	22	17	22	y	0.29	9	22	9	22	y	0.43	12	16	12	16	y	0.19	8	34	8	34	y	0.26	7	20	7	20	y	0.26	9	26	9	26	y	ENSMUSG00000037353.10	Letmd1	chr15	protein_coding	LETM1 domain containing 1
known_NIR_5921	chr15	100367717	100370430	+	100367717;100369656	100369541;100370430	ES	ENSMUST00000037001.10	known	0.00	0	48.0	0	45;51	n	0.08	3	33.0	3	39;27	y	0.10	6	55.0	6	57;53	y	0.03	2	64.5	2	71;58	y	0.05	4	75.5	4	66;85	y	0.08	4	45.5	4	39;52	y	0.09	6	62.0	6	67;57	y	0.06	2	30.5	2	30;31	y	0.05	2	37.5	2	36;39	y	0.01	1	76.5	1	74;79	n	0.02	1	42.0	1	40;44	n	0.00	0	75.0	0	71;79	n	ENSMUSG00000037353.10	Letmd1	chr15	protein_coding	LETM1 domain containing 1
known_NIR_5922	chr15	100407555	100409576	-	100404138	100409576	A3SS	ENSMUST00000231174.2	known	0.06	1	17	1	17	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.07	1	13	1	13	n	0.17	2	10	2	10	y	0.11	2	16	2	16	y	0.00	0	16	0	16	n	0.00	0	14	0	14	n	0.17	2	10	2	10	y	0.05	1	19	1	19	n	0.00	0	14	0	14	n	ENSMUSG00000009733.10	Tfcp2	chr15	protein_coding	transcription factor CP2
known_NIR_5923	chr15	100418596	100423448	-	100418596;100420376	100420270;100423448	ES	ENSMUST00000229696.2	known	0.19	2	8.5	2	9;8	y	0.00	0	7.5	0	5;10	n	0.58	9	6.5	9	6;7	y	0.10	1	9.5	1	10;9	n	0.15	3	17.0	3	16;18	y	0.20	2	8.0	2	9;7	y	0.21	3	11.0	3	15;7	y	0.10	1	9.5	1	6;13	n	0.00	0	11.0	0	12;10	n	0.19	2	8.5	2	10;7	y	0.18	2	9.0	2	9;9	y	0.25	3	9.0	3	9;9	y	ENSMUSG00000009733.10	Tfcp2	chr15	protein_coding	transcription factor CP2
known_NIR_5924	chr15	100485786	100489722	-	100485791	100489722	A3SS	ENSMUST00000176140.8	known	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.20	2	8	2	8	y	0.00	0	6	0	6	n	0.00	0	4	0	4	n	ENSMUSG00000009739.18	Pou6f1	chr15	protein_coding	POU domain, class 6, transcription factor 1
known_NIR_5925	chr15	100514081	100514794	+	100513605	100514794	A5SS	ENSMUST00000000356.10	known	0.01	3	235	3	235	y	0.01	2	169	2	169	y	0.01	3	322	3	322	y	0.01	2	249	2	249	y	0.01	3	342	3	342	y	0.00	0	155	0	155	n	0.00	0	293	0	293	n	0.01	1	193	1	193	n	0.00	1	207	1	207	n	0.01	2	337	2	337	y	0.01	3	231	3	231	y	0.00	0	329	0	329	n	ENSMUSG00000000346.10	Dazap2	chr15	protein_coding	DAZ associated protein 2
known_NIR_5926	chr15	100514081	100514794	+	100514203	100514794	A5SS	ENSMUST00000230661.2	known	0.27	3	8	3	8	y	0.12	2	14	2	14	y	0.14	3	18	3	18	y	0.20	2	8	2	8	y	0.13	3	20	3	20	y	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.10	1	9	1	9	n	0.12	1	7	1	7	n	0.11	2	17	2	17	y	0.30	3	7	3	7	y	0.00	0	14	0	14	n	ENSMUSG00000000346.10	Dazap2	chr15	protein_coding	DAZ associated protein 2
known_NIR_5927	chr15	100514203	100514794	+	100513605	100514794	A5SS	ENSMUST00000000356.10	known	0.03	8	235	8	235	y	0.08	14	169	14	169	y	0.05	18	322	18	322	y	0.03	8	249	8	249	y	0.06	20	342	20	342	y	0.01	2	155	2	155	y	0.03	10	293	10	293	y	0.04	9	193	9	193	y	0.03	7	207	7	207	y	0.05	17	337	17	337	y	0.03	7	231	7	231	y	0.04	14	329	14	329	y	ENSMUSG00000000346.10	Dazap2	chr15	protein_coding	DAZ associated protein 2
known_NIR_5928	chr15	100519839	100520510	-	100519907	100520510	A3SS	ENSMUST00000066068.7	known	0.03	3	112	3	112	y	0.04	4	88	4	88	y	0.06	8	137	8	137	y	0.05	4	72	4	72	y	0.05	8	165	8	165	y	0.05	4	82	4	82	y	0.08	13	145	13	145	y	0.00	0	93	0	93	n	0.07	8	104	8	104	y	0.01	1	145	1	145	n	0.03	3	89	3	89	y	0.07	6	84	6	84	y	ENSMUSG00000053559.14	Smagp	chr15	protein_coding	small cell adhesion glycoprotein
known_NIR_5929	chr15	100534136	100534630	-	100534136	100534440	A5SS	ENSMUST00000066068.7	known	0.57	33	25	33	25	y	0.58	32	23	32	23	y	0.52	43	40	43	40	y	0.54	27	23	27	23	y	0.60	59	40	59	40	y	0.75	33	11	33	11	y	0.68	50	23	50	23	y	0.57	25	19	25	19	y	0.65	40	22	40	22	y	0.55	35	29	35	29	y	0.57	36	27	36	27	y	0.67	41	20	41	20	y	ENSMUSG00000053559.14	Smagp	chr15	protein_coding	small cell adhesion glycoprotein
known_NIR_5930	chr15	100573354	100576884	-	100573354	100576525	5pMXE	ENSMUST00000229869.2	known	0.81	38	9	38	9	y	0.75	27	9	27	9	y	0.83	19	4	19	4	y	0.69	20	9	20	9	y	0.82	56	12	56	12	y	0.83	24	5	24	5	y	0.78	56	16	56	16	y	0.87	41	6	41	6	y	0.84	32	6	32	6	y	0.78	39	11	39	11	y	0.87	47	7	47	7	y	0.70	33	14	33	14	y	ENSMUSG00000023031.9	Cela1	chr15	protein_coding	chymotrypsin-like elastase family, member 1
known_NIR_5931	chr15	100573354	100576884	-	100573354	100579024	A5SS	ENSMUST00000230572.2	known	0.42	38	52	38	52	y	0.49	27	28	27	28	y	0.63	19	11	19	11	y	0.39	20	31	20	31	y	0.72	56	22	56	22	y	0.71	24	10	24	10	y	0.60	56	38	56	38	y	0.85	41	7	41	7	y	0.41	32	47	32	47	y	0.50	39	39	39	39	y	0.51	47	46	47	46	y	0.61	33	21	33	21	y	ENSMUSG00000023031.9	Cela1	chr15	protein_coding	chymotrypsin-like elastase family, member 1
known_NIR_5932	chr15	100573354	100579024	-	100573354	100576525	5pMXE	ENSMUST00000229869.2	known	0.85	52	9	52	9	y	0.76	28	9	28	9	y	0.73	11	4	11	4	y	0.78	31	9	31	9	y	0.65	22	12	22	12	y	0.67	10	5	10	5	y	0.70	38	16	38	16	y	0.54	7	6	7	6	y	0.89	47	6	47	6	y	0.78	39	11	39	11	y	0.87	46	7	46	7	y	0.60	21	14	21	14	y	ENSMUSG00000023031.9	Cela1	chr15	protein_coding	chymotrypsin-like elastase family, member 1
known_NIR_5933	chr15	100579169	100580768	-	100579169	100579675	5pMXE	ENSMUST00000230572.2	known	0.25	2	6	2	6	n	0.38	3	5	3	5	n	1.00	6	0	6	0	n	1.00	3	0	3	0	n	0.62	5	3	5	3	n	-	-	-	-	-	-	0.17	1	5	1	5	n	1.00	6	0	6	0	n	0.27	3	8	3	8	y	0.36	5	9	5	9	y	0.20	2	8	2	8	y	0.36	4	7	4	7	y	ENSMUSG00000023031.9	Cela1	chr15	protein_coding	chymotrypsin-like elastase family, member 1
known_NIR_5934	chr15	100579169	100580935	-	100579169	100579675	5pMXE	ENSMUST00000230572.2	known	0.25	2	6	2	6	n	0.38	3	5	3	5	n	1.00	1	0	1	0	n	1.00	4	0	4	0	n	0.25	1	3	1	3	n	1.00	1	0	1	0	n	0.29	2	5	2	5	n	1.00	1	0	1	0	n	0.27	3	8	3	8	y	0.18	2	9	2	9	y	0.33	4	8	4	8	y	0.36	4	7	4	7	y	ENSMUSG00000023031.9	Cela1	chr15	protein_coding	chymotrypsin-like elastase family, member 1
known_NIR_5935	chr15	101164852	101167964	+	101156307	101167964	A5SS	ENSMUST00000228985.2	known	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.77	10	3	10	3	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	n	1.00	3	0	3	0	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	n	ENSMUSG00000023034.8	Nr4a1	chr15	protein_coding	nuclear receptor subfamily 4, group A, member 1
known_NIR_5936	chr15	101184691	101184814	+	101182426	101184814	A5SS	ENSMUST00000048393.8	known	0.16	13	68	13	68	y	0.12	8	59	8	59	y	0.00	0	64	0	64	n	0.13	10	69	10	69	y	0.18	17	80	17	80	y	0.09	3	31	3	31	y	0.13	15	102	15	102	y	0.12	7	49	7	49	y	0.23	17	56	17	56	y	0.13	14	92	14	92	y	0.15	14	77	14	77	y	0.11	12	94	12	94	y	ENSMUSG00000037204.8	Atg101	chr15	protein_coding	autophagy related 101
known_NIR_5937	chr15	102011596	102012965	+	102008987	102012965	A5SS	ENSMUST00000228958.2	known	0.33	3	6	3	6	n	0.50	3	3	3	3	n	0.64	7	4	7	4	y	0.33	3	6	3	6	n	0.41	7	10	7	10	y	0.25	2	6	2	6	n	0.43	3	4	3	4	n	0.00	0	1	0	1	n	0.67	6	3	6	3	n	0.50	3	3	3	3	n	0.33	3	6	3	6	n	0.20	2	8	2	8	y	ENSMUSG00000037003.17	Tns2	chr15	protein_coding	tensin 2
known_NIR_5938	chr15	102020728	102020843	+	102020728	102020864	A3SS	ENSMUST00000228958.2	known	0.02	1	58	1	58	n	0.00	0	50	0	50	n	0.02	2	84	2	84	y	0.08	7	84	7	84	y	0.02	3	126	3	126	y	0.04	2	48	2	48	y	0.06	6	93	6	93	y	0.00	0	47	0	47	n	0.03	2	71	2	71	y	0.06	6	87	6	87	y	0.03	2	64	2	64	y	0.03	4	119	4	119	y	ENSMUSG00000037003.17	Tns2	chr15	protein_coding	tensin 2
known_NIR_5939	chr15	102086221	102087216	-	102086221;102087051	102086962;102087216	ES	ENSMUST00000023805.3	known	0.01	6	752.0	6	707;797	y	0.01	7	612.5	7	633;592	y	0.01	11	854.5	11	882;827	y	0.01	4	746.5	4	715;778	y	0.02	33	1858.0	33	1798;1918	y	0.03	19	608.0	19	607;609	y	0.01	12	1292.0	12	1207;1377	y	0.02	17	665.5	17	650;681	y	0.01	5	946.5	5	914;979	y	0.01	11	1680.0	11	1658;1702	y	0.01	9	962.0	9	960;964	y	0.00	8	1689.0	8	1667;1711	y	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
known_NIR_5940	chr15	102086221	102087216	-	102087051	102087216	3pMXE	ENSMUST00000230253.2	known	0.01	6	797	6	797	y	0.01	7	592	7	592	y	0.01	11	827	11	827	y	0.01	4	778	4	778	y	0.02	33	1918	33	1918	y	0.03	19	609	19	609	y	0.01	12	1377	12	1377	y	0.02	17	681	17	681	y	0.01	5	979	5	979	y	0.01	11	1702	11	1702	y	0.01	9	964	9	964	y	0.00	8	1711	8	1711	y	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
known_NIR_5941	chr15	102086221;102087267	102087216;102087396	-	102086221;102087051	102086962;102087396	MXE	ENSMUST00000231029.2	known	0.49	337.5	356.5	6;669	707;6	y	0.45	261.0	319.5	7;515	633;6	y	0.47	411.5	464.0	11;812	882;46	y	0.50	356.0	358.0	4;708	715;1	n	0.49	859.5	911.0	33;1686	1798;24	y	0.48	291.5	311.0	19;564	607;15	y	0.48	567.0	606.5	12;1122	1207;6	y	0.48	307.0	333.5	17;597	650;17	y	0.48	420.0	460.5	5;835	914;7	y	0.47	741.5	833.0	11;1472	1658;8	y	0.48	443.5	481.5	9;878	960;3	y	0.48	774.5	838.0	8;1541	1667;9	y	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
known_NIR_5942	chr15	102087051	102087396	-	102087051;102087267	102087216;102087396	ES	ENSMUST00000023805.3	known	0.01	6	733.0	6	797;669	y	0.01	6	553.5	6	592;515	y	0.05	46	819.5	46	827;812	y	0.00	1	743.0	1	778;708	n	0.01	24	1802.0	24	1918;1686	y	0.02	15	586.5	15	609;564	y	0.00	6	1249.5	6	1377;1122	y	0.03	17	639.0	17	681;597	y	0.01	7	907.0	7	979;835	y	0.01	8	1587.0	8	1702;1472	y	0.00	3	921.0	3	964;878	y	0.01	9	1626.0	9	1711;1541	y	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
known_NIR_5943	chr15	102088037	102088406	-	102088037	102088264	5pMXE	ENSMUST00000230253.2	known	0.00	0	647	0	647	n	0.00	1	475	1	475	n	0.01	7	896	7	896	y	0.00	0	646	0	646	n	0.00	0	1775	0	1775	n	0.00	0	655	0	655	n	0.00	1	1084	1	1084	n	0.01	5	640	5	640	y	0.00	0	839	0	839	n	0.00	4	1417	4	1417	y	0.00	3	898	3	898	y	0.00	5	1526	5	1526	y	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
known_NIR_5944	chr15	102088037	102088406	-	102088037;102088328	102088264;102088406	ES	ENSMUST00000023805.3	known	0.00	0	644.0	0	647;641	n	0.00	1	449.5	1	475;424	n	0.01	7	855.5	7	896;815	y	0.00	0	622.0	0	646;598	n	0.00	0	1720.5	0	1775;1666	n	0.00	0	638.0	0	655;621	n	0.00	1	1061.0	1	1084;1038	n	0.01	5	595.5	5	640;551	y	0.00	0	800.5	0	839;762	n	0.00	4	1378.0	4	1417;1339	y	0.00	3	881.5	3	898;865	y	0.00	5	1473.5	5	1526;1421	y	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
known_NIR_5945	chr15	102097114	102110879	-	102097114	102097322	5pMXE	ENSMUST00000023805.3	known	0.01	4	487	4	487	y	0.00	1	333	1	333	n	0.00	0	812	0	812	n	0.00	0	586	0	586	n	0.00	5	1431	5	1431	y	0.00	0	507	0	507	n	0.02	14	877	14	877	y	0.00	0	550	0	550	n	0.01	4	684	4	684	y	0.00	5	1219	5	1219	y	0.00	1	654	1	654	n	0.00	5	1255	5	1255	y	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
known_NIR_5946	chr15	102097114	102110879	-	102097114;102097397	102097322;102110879	ES	ENSMUST00000229043.2	known	0.02	4	258.0	4	487;29	y	0.01	1	177.0	1	333;21	n	0.00	0	422.5	0	812;33	n	0.00	0	309.5	0	586;33	n	0.01	5	740.0	5	1431;49	y	0.00	0	270.0	0	507;33	n	0.03	14	465.5	14	877;54	y	0.00	0	289.5	0	550;29	n	0.01	4	358.5	4	684;33	y	0.01	5	630.0	5	1219;41	y	0.00	1	344.5	1	654;35	n	0.01	5	649.5	5	1255;44	y	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
known_NIR_5947	chr15	102097114	102112574	-	102097114	102097322	5pMXE	ENSMUST00000023805.3	known	0.00	0	487	0	487	n	0.01	2	333	2	333	y	0.00	0	812	0	812	n	0.00	0	586	0	586	n	0.00	1	1431	1	1431	n	0.00	0	507	0	507	n	0.00	2	877	2	877	y	0.00	0	550	0	550	n	0.00	0	684	0	684	n	0.00	1	1219	1	1219	n	0.00	0	654	0	654	n	0.00	0	1255	0	1255	n	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
known_NIR_5948	chr15	102097114	102112574	-	102097114;102097397	102097322;102112574	ES	ENSMUST00000230687.2	known	0.00	0	244.0	0	487;1	n	0.01	2	167.5	2	333;2	y	0.00	0	406.0	0	812;0	n	0.00	0	293.0	0	586;0	n	0.00	1	716.5	1	1431;2	n	0.00	0	253.5	0	507;0	n	0.00	2	440.5	2	877;4	y	0.00	0	276.0	0	550;2	n	0.00	0	342.0	0	684;0	n	0.00	1	610.5	1	1219;2	n	0.00	0	327.0	0	654;0	n	0.00	0	627.5	0	1255;0	n	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
known_NIR_5949	chr15	102097114;102111009	102110879;102111572	-	102097114;102097397	102097322;102111572	MXE	ENSMUST00000229514.2	known	0.07	20.0	247.0	4;36	487;7	y	0.03	5.5	169.0	1;10	333;5	n	0.06	26.5	411.0	0;53	812;10	n	0.07	21.5	296.5	0;43	586;7	n	0.04	33.0	721.0	5;61	1431;11	y	0.05	13.0	257.0	0;26	507;7	n	0.09	42.0	443.0	14;70	877;9	y	0.06	18.5	278.0	0;37	550;6	n	0.06	23.0	344.0	4;42	684;4	y	0.04	27.5	617.5	5;50	1219;16	y	0.05	19.0	331.0	1;37	654;8	n	0.04	28.5	631.0	5;52	1255;7	y	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
known_NIR_5950	chr15	102097397	102100452	-	102097397	102110879	A5SS	ENSMUST00000229043.2	known	0.00	0	29	0	29	n	0.00	0	21	0	21	n	0.06	2	33	2	33	y	0.00	0	33	0	33	n	0.08	4	49	4	49	y	0.03	1	33	1	33	n	0.04	2	54	2	54	y	0.00	0	29	0	29	n	0.00	0	33	0	33	n	0.02	1	41	1	41	n	0.00	0	35	0	35	n	0.00	0	44	0	44	n	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
known_NIR_5951	chr15	102097397	102100452	-	102097397	102111572	A5SS	ENSMUST00000229514.2	known	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.17	2	10	2	10	y	0.00	0	7	0	7	n	0.27	4	11	4	11	y	0.12	1	7	1	7	n	0.18	2	9	2	9	y	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.06	1	16	1	16	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
known_NIR_5952	chr15	102097397	102111572	-	102097397;102111009	102110879;102111572	ES	ENSMUST00000229043.2	known	0.18	7	32.5	7	29;36	y	0.24	5	15.5	5	21;10	y	0.19	10	43.0	10	33;53	y	0.16	7	38.0	7	33;43	y	0.17	11	55.0	11	49;61	y	0.19	7	29.5	7	33;26	y	0.13	9	62.0	9	54;70	y	0.15	6	33.0	6	29;37	y	0.10	4	37.5	4	33;42	y	0.26	16	45.5	16	41;50	y	0.18	8	36.0	8	35;37	y	0.13	7	48.0	7	44;52	y	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
known_NIR_5953	chr15	102097397	102111572	-	102111009	102111572	3pMXE	ENSMUST00000230328.2	known	0.16	7	36	7	36	y	0.33	5	10	5	10	y	0.16	10	53	10	53	y	0.14	7	43	7	43	y	0.15	11	61	11	61	y	0.21	7	26	7	26	y	0.11	9	70	9	70	y	0.14	6	37	6	37	y	0.09	4	42	4	42	y	0.24	16	50	16	50	y	0.18	8	37	8	37	y	0.12	7	52	7	52	y	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
known_NIR_5954	chr15	102097397	102112131	-	102097397	102110879	A5SS&ES	ENSMUST00000231030.2	known	0.06	2	29	2	29	y	0.05	1	21	1	21	n	0.06	2	33	2	33	y	0.20	8	33	8	33	y	0.08	4	49	4	49	y	0.06	2	33	2	33	y	0.11	7	54	7	54	y	0.00	0	29	0	29	n	0.03	1	33	1	33	n	0.07	3	41	3	41	y	0.10	4	35	4	35	y	0.12	6	44	6	44	y	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
known_NIR_5955	chr15	102097397	102112131	-	102097397	102111572	A5SS&ES	ENSMUST00000229514.2	known	0.22	2	7	2	7	n	0.17	1	5	1	5	n	0.17	2	10	2	10	y	0.53	8	7	8	7	y	0.27	4	11	4	11	y	0.22	2	7	2	7	n	0.44	7	9	7	9	y	0.00	0	6	0	6	n	0.20	1	4	1	4	n	0.16	3	16	3	16	y	0.33	4	8	4	8	y	0.46	6	7	6	7	y	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
known_NIR_5956	chr15	102097397	102112131	-	102097397	102112574	A5SS	ENSMUST00000230687.2	known	0.67	2	1	2	1	n	0.33	1	2	1	2	n	1.00	2	0	2	0	n	1.00	8	0	8	0	n	0.67	4	2	4	2	n	1.00	2	0	2	0	n	0.64	7	4	7	4	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.60	3	2	3	2	n	1.00	4	0	4	0	n	1.00	6	0	6	0	n	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
known_NIR_5957	chr15	102097397	102112574	-	102097397	102111572	5pMXE	ENSMUST00000230665.2	known	0.12	1	7	1	7	n	0.29	2	5	2	5	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.15	2	11	2	11	y	0.00	0	7	0	7	n	0.31	4	9	4	9	y	0.25	2	6	2	6	n	0.00	0	4	0	4	n	0.11	2	16	2	16	y	0.00	0	8	0	8	n	0.00	0	7	0	7	n	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
known_NIR_5958	chr15	102097397;102111695	102111572;102112131	-	102097397	102112131	cassetteExon	ENSMUST00000229252.2	known	0.76	6.5	2	7;6	2	y	0.80	4.0	1	5;3	1	n	0.84	10.5	2	10;11	2	y	0.56	10.0	8	7;13	8	y	0.78	14.5	4	11;18	4	y	0.81	8.5	2	7;10	2	y	0.52	7.5	7	9;6	7	y	1.00	4.5	0	6;3	0	n	0.80	4.0	1	4;4	1	n	0.81	12.5	3	16;9	3	y	0.67	8.0	4	8;8	4	y	0.62	10.0	6	7;13	6	y	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
known_NIR_5959	chr15	102097397;102111695	102111572;102112574	-	102097397	102112574	cassetteExon	ENSMUST00000230687.2	known	0.88	7.0	1	7;7	1	n	0.69	4.5	2	5;4	2	y	1.00	9.0	0	10;8	0	n	1.00	8.0	0	7;9	0	n	0.83	9.5	2	11;8	2	y	1.00	6.5	0	7;6	0	n	0.58	5.5	4	9;2	4	y	0.76	6.5	2	6;7	2	y	1.00	5.0	0	4;6	0	n	0.88	14.5	2	16;13	2	y	1.00	6.0	0	8;4	0	n	1.00	12.0	0	7;17	0	n	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
known_NIR_5960	chr15	102109517	102110879	-	102097114	102110879	A3SS	ENSMUST00000230656.2	known	0.56	5	4	5	4	n	0.67	2	1	2	1	n	1.00	5	0	5	0	n	1.00	3	0	3	0	n	0.29	2	5	2	5	n	1.00	3	0	3	0	n	0.22	4	14	4	14	y	-	-	-	-	-	-	0.43	3	4	3	4	n	0.29	2	5	2	5	n	0.00	0	1	0	1	n	0.38	3	5	3	5	n	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
known_NIR_5961	chr15	102109517	102110879	-	102097397	102110879	A3SS	ENSMUST00000229043.2	known	0.15	5	29	5	29	y	0.09	2	21	2	21	y	0.13	5	33	5	33	y	0.08	3	33	3	33	y	0.04	2	49	2	49	y	0.08	3	33	3	33	y	0.07	4	54	4	54	y	0.00	0	29	0	29	n	0.08	3	33	3	33	y	0.05	2	41	2	41	y	0.00	0	35	0	35	n	0.06	3	44	3	44	y	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
known_NIR_5962	chr15	102111695	102112131	-	102111695	102112574	A5SS	ENSMUST00000229514.2	known	0.46	6	7	6	7	y	0.43	3	4	3	4	n	0.58	11	8	11	8	y	0.59	13	9	13	9	y	0.69	18	8	18	8	y	0.62	10	6	10	6	y	0.75	6	2	6	2	n	0.30	3	7	3	7	y	0.40	4	6	4	6	y	0.41	9	13	9	13	y	0.67	8	4	8	4	y	0.43	13	17	13	17	y	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
known_NIR_5963	chr15	102113318	102113664	+	102113521	102113664	A5SS	ENSMUST00000118729.8	known	0.13	2	13	2	13	y	0.25	2	6	2	6	n	0.35	8	15	8	15	y	0.33	4	8	4	8	y	0.25	4	12	4	12	y	0.40	4	6	4	6	y	0.36	4	7	4	7	y	0.31	5	11	5	11	y	0.50	3	3	3	3	n	0.46	6	7	6	7	y	0.42	5	7	5	7	y	0.13	2	13	2	13	y	ENSMUSG00000046897.18	Zfp740	chr15	protein_coding	zinc finger protein 740
known_NIR_5964	chr15	102113318	102116206	+	102113318;102113740	102113664;102116206	ES	ENSMUST00000119168.8	known	0.13	1	6.5	1	2;11	n	0.35	3	5.5	3	2;9	y	0.44	12	15.5	12	8;23	y	0.18	2	9.0	2	4;14	y	0.00	0	11.5	0	4;19	n	0.54	7	6.0	7	4;8	y	0.19	4	17.0	4	4;30	y	0.24	2	6.5	2	5;8	y	0.65	10	5.5	10	3;8	y	0.42	9	12.5	9	6;19	y	0.19	2	8.5	2	5;12	y	0.34	6	11.5	6	2;21	y	ENSMUSG00000046897.18	Zfp740	chr15	protein_coding	zinc finger protein 740
known_NIR_5965	chr15	102113318	102116206	+	102113740	102116206	A5SS&ES	ENSMUST00000118729.8	known	0.08	1	11	1	11	n	0.25	3	9	3	9	y	0.34	12	23	12	23	y	0.12	2	14	2	14	y	0.00	0	19	0	19	n	0.47	7	8	7	8	y	0.12	4	30	4	30	y	0.20	2	8	2	8	y	0.56	10	8	10	8	y	0.32	9	19	9	19	y	0.14	2	12	2	12	y	0.22	6	21	6	21	y	ENSMUSG00000046897.18	Zfp740	chr15	protein_coding	zinc finger protein 740
known_NIR_5966	chr15	102113521	102116206	+	102113318	102116206	A5SS	ENSMUST00000141465.9	known	0.50	1	1	1	1	n	0.40	2	3	2	3	n	0.52	13	12	13	12	y	0.78	7	2	7	2	n	1.00	6	0	6	0	n	0.30	3	7	3	7	y	0.56	5	4	5	4	n	0.67	4	2	4	2	n	0.33	5	10	5	10	y	0.40	6	9	6	9	y	0.67	4	2	4	2	n	0.45	5	6	5	6	y	ENSMUSG00000046897.18	Zfp740	chr15	protein_coding	zinc finger protein 740
known_NIR_5967	chr15	102113521	102116206	+	102113521;102113740	102113664;102116206	ES	ENSMUST00000118729.8	known	0.08	1	12.0	1	13;11	n	0.21	2	7.5	2	6;9	y	0.41	13	19.0	13	15;23	y	0.39	7	11.0	7	8;14	y	0.28	6	15.5	6	12;19	y	0.30	3	7.0	3	6;8	y	0.21	5	18.5	5	7;30	y	0.30	4	9.5	4	11;8	y	0.48	5	5.5	5	3;8	y	0.32	6	13.0	6	7;19	y	0.30	4	9.5	4	7;12	y	0.23	5	17.0	5	13;21	y	ENSMUSG00000046897.18	Zfp740	chr15	protein_coding	zinc finger protein 740
known_NIR_5968	chr15	102113521	102116206	+	102113740	102116206	A5SS&ES	ENSMUST00000119168.8	known	0.08	1	11	1	11	n	0.18	2	9	2	9	y	0.36	13	23	13	23	y	0.33	7	14	7	14	y	0.24	6	19	6	19	y	0.27	3	8	3	8	y	0.14	5	30	5	30	y	0.33	4	8	4	8	y	0.38	5	8	5	8	y	0.24	6	19	6	19	y	0.25	4	12	4	12	y	0.19	5	21	5	21	y	ENSMUSG00000046897.18	Zfp740	chr15	protein_coding	zinc finger protein 740
known_NIR_5969	chr15	102115230	102116206	+	102113318	102116206	A5SS	ENSMUST00000141465.9	known	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.29	5	12	5	12	y	0.33	1	2	1	2	n	-	-	-	-	-	-	0.22	2	7	2	7	n	0.00	0	4	0	4	n	0.60	3	2	3	2	n	0.17	2	10	2	10	y	0.10	1	9	1	9	n	0.00	0	2	0	2	n	0.33	3	6	3	6	n	ENSMUSG00000046897.18	Zfp740	chr15	protein_coding	zinc finger protein 740
known_NIR_5970	chr15	102115230	102116206	+	102113521	102116206	A5SS	ENSMUST00000139960.8	known	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.28	5	13	5	13	y	0.12	1	7	1	7	n	0.00	0	6	0	6	n	0.40	2	3	2	3	n	0.00	0	5	0	5	n	0.43	3	4	3	4	n	0.29	2	5	2	5	n	0.14	1	6	1	6	n	0.00	0	4	0	4	n	0.38	3	5	3	5	n	ENSMUSG00000046897.18	Zfp740	chr15	protein_coding	zinc finger protein 740
known_NIR_5971	chr15	102115230	102116206	+	102113740	102116206	A5SS	ENSMUST00000118729.8	known	0.08	1	11	1	11	n	0.00	0	9	0	9	n	0.18	5	23	5	23	y	0.07	1	14	1	14	n	0.00	0	19	0	19	n	0.20	2	8	2	8	y	0.00	0	30	0	30	n	0.27	3	8	3	8	y	0.20	2	8	2	8	y	0.05	1	19	1	19	n	0.00	0	12	0	12	n	0.12	3	21	3	21	y	ENSMUSG00000046897.18	Zfp740	chr15	protein_coding	zinc finger protein 740
known_NIR_5972	chr15	102116355	102116671	+	102116355	102116707	A3SS	ENSMUST00000118729.8	known	0.41	7	10	7	10	y	0.43	9	12	9	12	y	0.56	35	27	35	27	y	0.40	10	15	10	15	y	0.44	17	22	17	22	y	0.42	13	18	13	18	y	0.71	20	8	20	8	y	0.55	11	9	11	9	y	0.52	13	12	13	12	y	0.50	24	24	24	24	y	0.38	8	13	8	13	y	0.62	26	16	26	16	y	ENSMUSG00000046897.18	Zfp740	chr15	protein_coding	zinc finger protein 740
known_NIR_5973	chr15	102150419	102154495	-	102150419	102160854	A5SS	ENSMUST00000043172.15	known	0.82	9	2	9	2	y	0.83	5	1	5	1	n	0.60	3	2	3	2	n	0.88	7	1	7	1	n	0.78	7	2	7	2	n	1.00	2	0	2	0	n	0.50	4	4	4	4	n	1.00	3	0	3	0	n	-	-	-	-	-	-	1.00	7	0	7	0	n	0.60	3	2	3	2	n	1.00	8	0	8	0	n	ENSMUSG00000001288.16	Rarg	chr15	protein_coding	retinoic acid receptor, gamma
known_NIR_5974	chr15	102234695	102236957	+	102234695;102235284	102234868;102236957	ES	ENSMUST00000168805.8	known	0.00	0	532.0	0	493;571	n	0.00	0	548.0	0	515;581	n	0.00	0	623.0	0	560;686	n	0.00	0	459.0	0	439;479	n	0.00	0	691.5	0	647;736	n	0.00	0	368.0	0	312;424	n	0.00	0	738.0	0	713;763	n	0.00	0	346.5	0	340;353	n	0.00	0	465.0	0	454;476	n	0.00	3	706.0	3	640;772	y	0.00	0	596.0	0	591;601	n	0.00	0	609.5	0	558;661	n	ENSMUSG00000001289.13	Pfdn5	chr15	protein_coding	prefoldin 5
known_NIR_5975	chr15	102234695	102236957	+	102234970	102236957	5pMXE	ENSMUST00000169637.8	known	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.27	3	8	3	8	y	0.00	0	11	0	11	n	0.00	0	10	0	10	n	ENSMUSG00000001289.13	Pfdn5	chr15	protein_coding	prefoldin 5
known_NIR_5976	chr15	102234695	102236957	+	102235284	102236957	5pMXE	ENSMUST00000165671.8	known	0.00	0	571	0	571	n	0.00	0	581	0	581	n	0.00	0	686	0	686	n	0.00	0	479	0	479	n	0.00	0	736	0	736	n	0.00	0	424	0	424	n	0.00	0	763	0	763	n	0.00	0	353	0	353	n	0.00	0	476	0	476	n	0.00	3	772	3	772	y	0.00	0	601	0	601	n	0.00	0	661	0	661	n	ENSMUSG00000001289.13	Pfdn5	chr15	protein_coding	prefoldin 5
known_NIR_5977	chr15	102234695;102234970	102234868;102236957	+	102234695	102236957	cassetteExon	ENSMUST00000170627.8	known	1.00	251.0	0	493;9	0	n	1.00	261.5	0	515;8	0	n	1.00	285.0	0	560;10	0	n	1.00	222.5	0	439;6	0	n	1.00	328.5	0	647;10	0	n	1.00	159.5	0	312;7	0	n	1.00	361.0	0	713;9	0	n	1.00	171.0	0	340;2	0	n	1.00	231.0	0	454;8	0	n	0.99	324.0	3	640;8	3	y	1.00	301.0	0	591;11	0	n	1.00	284.0	0	558;10	0	n	ENSMUSG00000001289.13	Pfdn5	chr15	protein_coding	prefoldin 5
known_NIR_5978	chr15	102234970	102236957	+	102234970;102235284	102235253;102236957	ES	ENSMUST00000166658.8	known	0.02	9	521.5	9	472;571	y	0.01	8	533.5	8	486;581	y	0.02	10	637.5	10	589;686	y	0.01	6	432.0	6	385;479	y	0.01	10	671.5	10	607;736	y	0.02	7	376.0	7	328;424	y	0.01	9	703.5	9	644;763	y	0.01	2	336.5	2	320;353	y	0.02	8	441.0	8	406;476	y	0.01	8	713.0	8	654;772	y	0.02	11	556.5	11	512;601	y	0.02	10	602.0	10	543;661	y	ENSMUSG00000001289.13	Pfdn5	chr15	protein_coding	prefoldin 5
known_NIR_5979	chr15	102234970	102236957	+	102235284	102236957	A5SS	ENSMUST00000168805.8	known	0.02	9	571	9	571	y	0.01	8	581	8	581	y	0.01	10	686	10	686	y	0.01	6	479	6	479	y	0.01	10	736	10	736	y	0.02	7	424	7	424	y	0.01	9	763	9	763	y	0.01	2	353	2	353	y	0.02	8	476	8	476	y	0.01	8	772	8	772	y	0.02	11	601	11	601	y	0.01	10	661	10	661	y	ENSMUSG00000001289.13	Pfdn5	chr15	protein_coding	prefoldin 5
known_NIR_5980	chr15	102241153	102242637	+	102240637	102242637	A5SS	ENSMUST00000113682.9	known	0.05	3	58	3	58	y	0.02	1	57	1	57	n	0.00	0	49	0	49	n	0.10	6	52	6	52	y	0.04	3	64	3	64	y	0.00	0	33	0	33	n	0.00	0	72	0	72	n	0.03	1	31	1	31	n	0.00	0	52	0	52	n	0.03	3	84	3	84	y	0.03	2	63	2	63	y	0.03	2	75	2	75	y	ENSMUSG00000001285.13	Myg1	chr15	protein_coding	melanocyte proliferating gene 1
known_NIR_5981	chr15	10224182	10293737	+	10177957	10293737	A5SS	ENSMUST00000005400.13	known	0.55	65	54	65	54	y	0.54	48	41	48	41	y	0.67	2	1	2	1	n	0.61	77	50	77	50	y	0.59	77	53	77	53	y	0.60	3	2	3	2	n	0.47	49	55	49	55	y	0.20	3	12	3	12	y	0.56	71	56	71	56	y	0.47	89	99	89	99	y	0.55	71	57	71	57	y	0.61	134	85	134	85	y	ENSMUSG00000005268.21	Prlr	chr15	protein_coding	prolactin receptor
known_NIR_5982	chr15	102316367	102317593	+	102316367	102316651	3pMXE	ENSMUST00000170884.8	known	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	26	0	26	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.20	2	8	2	8	y	0.00	0	3	0	3	n	0.00	0	9	0	9	n	ENSMUSG00000001280.14	Sp1	chr15	protein_coding	trans-acting transcription factor 1
known_NIR_5983	chr15	102367690	102368543	+	102367690;102368016	102367899;102368543	ES	ENSMUST00000023810.12	known	0.61	53	33.5	53	23;44	y	0.65	57	30.5	57	19;42	y	0.69	65	29.5	65	25;34	y	0.60	63	41.5	63	30;53	y	0.53	73	65.0	73	44;86	y	0.55	35	29.0	35	18;40	y	0.64	95	53.5	95	38;69	y	0.63	36	21.0	36	17;25	y	0.65	62	33.5	62	22;45	y	0.46	69	80.0	69	56;104	y	0.67	86	43.0	86	37;49	y	0.65	82	44.0	82	29;59	y	ENSMUSG00000023048.14	Prr13	chr15	protein_coding	proline rich 13
known_NIR_5984	chr15	102367690	102368543	+	102368016	102368543	A5SS	ENSMUST00000171245.8	known	0.55	53	44	53	44	y	0.58	57	42	57	42	y	0.66	65	34	65	34	y	0.54	63	53	63	53	y	0.46	73	86	73	86	y	0.47	35	40	35	40	y	0.58	95	69	95	69	y	0.59	36	25	36	25	y	0.58	62	45	62	45	y	0.40	69	104	69	104	y	0.64	86	49	86	49	y	0.58	82	59	82	59	y	ENSMUSG00000023048.14	Prr13	chr15	protein_coding	proline rich 13
known_NIR_5985	chr15	102379238	102381720	+	102379238	102381696	A3SS	ENSMUST00000230129.2	known	0.38	70	113	70	113	y	0.39	55	87	55	87	y	0.35	82	152	82	152	y	0.31	60	131	60	131	y	0.43	81	108	81	108	y	0.42	42	57	42	57	y	0.34	81	160	81	160	y	0.39	48	75	48	75	y	0.35	46	87	46	87	y	0.40	101	151	101	151	y	0.37	82	137	82	137	y	0.29	86	206	86	206	y	ENSMUSG00000056851.15	Pcbp2	chr15	protein_coding	poly(rC) binding protein 2
known_NIR_5986	chr15	102391723	102392589	+	102391723	102392601	A3SS	ENSMUST00000230129.2	known	0.46	223	266	223	266	y	0.47	207	232	207	232	y	0.56	364	281	364	281	y	0.43	220	287	220	287	y	0.43	276	360	276	360	y	0.51	146	140	146	140	y	0.43	262	354	262	354	y	0.45	135	162	135	162	y	0.41	180	257	180	257	y	0.45	336	418	336	418	y	0.43	255	340	255	340	y	0.46	387	460	387	460	y	ENSMUSG00000056851.15	Pcbp2	chr15	protein_coding	poly(rC) binding protein 2
known_NIR_5987	chr15	102392675	102395523	+	102392675	102394383	3pMXE	ENSMUST00000229102.2	known	0.53	241	213	241	213	y	0.57	289	214	289	214	y	0.52	339	316	339	316	y	0.48	234	255	234	255	y	0.49	323	340	323	340	y	0.50	149	147	149	147	y	0.49	311	326	311	326	y	0.53	168	152	168	152	y	0.50	215	216	215	216	y	0.52	383	354	383	354	y	0.55	328	267	328	267	y	0.51	439	414	439	414	y	ENSMUSG00000056851.15	Pcbp2	chr15	protein_coding	poly(rC) binding protein 2
known_NIR_5988	chr15	102392675	102395523	+	102392675;102394475	102394383;102395523	ES	ENSMUST00000230129.2	known	0.52	241	223.0	241	213;233	y	0.55	289	232.5	289	214;251	y	0.51	339	320.5	339	316;325	y	0.47	234	261.0	234	255;267	y	0.49	323	333.0	323	340;326	y	0.49	149	153.0	149	147;159	y	0.47	311	346.0	311	326;366	y	0.53	168	151.0	168	152;150	y	0.47	215	239.0	215	216;262	y	0.51	383	363.0	383	354;372	y	0.55	328	273.5	328	267;280	y	0.51	439	417.0	439	414;420	y	ENSMUSG00000056851.15	Pcbp2	chr15	protein_coding	poly(rC) binding protein 2
known_NIR_5989	chr15	102392675	102395523	+	102394387	102395523	5pMXE	ENSMUST00000229822.2	known	1.00	241	0	241	0	n	1.00	289	0	289	0	n	1.00	339	0	339	0	n	1.00	234	0	234	0	n	1.00	323	0	323	0	n	1.00	149	0	149	0	n	1.00	311	0	311	0	n	0.95	168	9	168	9	y	1.00	215	0	215	0	n	1.00	383	0	383	0	n	1.00	328	0	328	0	n	1.00	439	0	439	0	n	ENSMUSG00000056851.15	Pcbp2	chr15	protein_coding	poly(rC) binding protein 2
known_NIR_5990	chr15	102392675	102395523	+	102394475	102395523	5pMXE	ENSMUST00000230282.2	known	0.51	241	233	241	233	y	0.54	289	251	289	251	y	0.51	339	325	339	325	y	0.47	234	267	234	267	y	0.50	323	326	323	326	y	0.48	149	159	149	159	y	0.46	311	366	311	366	y	0.53	168	150	168	150	y	0.45	215	262	215	262	y	0.51	383	372	383	372	y	0.54	328	280	328	280	y	0.51	439	420	439	420	y	ENSMUSG00000056851.15	Pcbp2	chr15	protein_coding	poly(rC) binding protein 2
known_NIR_5991	chr15	102392675	102395523	+	102394652	102395523	5pMXE	ENSMUST00000230997.2	known	1.00	241	0	241	0	n	1.00	289	0	289	0	n	1.00	339	0	339	0	n	1.00	234	0	234	0	n	1.00	323	0	323	0	n	1.00	149	0	149	0	n	1.00	311	0	311	0	n	1.00	168	0	168	0	n	1.00	215	0	215	0	n	0.99	383	2	383	2	y	1.00	328	0	328	0	n	1.00	439	0	439	0	n	ENSMUSG00000056851.15	Pcbp2	chr15	protein_coding	poly(rC) binding protein 2
known_NIR_5992	chr15	102392675	102396640	+	102392675	102394383	3pMXE	ENSMUST00000229102.2	known	0.01	2	213	2	213	y	0.00	1	214	1	214	n	0.00	1	316	1	316	n	0.00	0	255	0	255	n	0.00	0	340	0	340	n	0.00	0	147	0	147	n	0.02	6	326	6	326	y	0.01	2	152	2	152	y	0.00	0	216	0	216	n	0.01	2	354	2	354	y	0.01	2	267	2	267	y	0.01	3	414	3	414	y	ENSMUSG00000056851.15	Pcbp2	chr15	protein_coding	poly(rC) binding protein 2
known_NIR_5993	chr15	102392675	102396640	+	102392675;102395564	102395523;102396640	ES	ENSMUST00000229618.2	known	0.01	2	381.0	2	241;521	y	0.00	1	444.5	1	289;600	n	0.00	1	541.0	1	339;743	n	0.00	0	427.5	0	234;621	n	0.00	0	523.0	0	323;723	n	0.00	0	239.0	0	149;329	n	0.01	6	535.0	6	311;759	y	0.01	2	274.0	2	168;380	y	0.00	0	388.0	0	215;561	n	0.00	2	597.5	2	383;812	y	0.00	2	508.0	2	328;688	y	0.00	3	702.0	3	439;965	y	ENSMUSG00000056851.15	Pcbp2	chr15	protein_coding	poly(rC) binding protein 2
known_NIR_5994	chr15	102392675;102394387	102394383;102395523	+	102392675	102395523	cassetteExon	ENSMUST00000229618.2	known	0.31	106.5	241	213;0	241	n	0.27	107.0	289	214;0	289	n	0.32	158.0	339	316;0	339	n	0.35	127.5	234	255;0	234	n	0.34	170.0	323	340;0	323	n	0.33	73.5	149	147;0	149	n	0.34	163.0	311	326;0	311	n	0.32	80.5	168	152;9	168	y	0.33	108.0	215	216;0	215	n	0.32	177.0	383	354;0	383	n	0.29	133.5	328	267;0	328	n	0.32	207.0	439	414;0	439	n	ENSMUSG00000056851.15	Pcbp2	chr15	protein_coding	poly(rC) binding protein 2
known_NIR_5995	chr15	102392675;102394475	102394383;102396640	+	102392675;102395564	102395523;102396640	MXE	ENSMUST00000229618.2	known	0.22	107.0	381.0	213;1	241;521	n	0.19	107.0	444.5	214;0	289;600	n	0.23	159.0	541.0	316;2	339;743	y	0.23	128.0	427.5	255;1	234;621	n	0.25	170.0	523.0	340;0	323;723	n	0.24	74.5	239.0	147;2	149;329	y	0.23	163.0	535.0	326;0	311;759	n	0.22	76.0	274.0	152;0	168;380	n	0.22	108.0	388.0	216;0	215;561	n	0.23	177.0	597.5	354;0	383;812	n	0.21	133.5	508.0	267;0	328;688	n	0.23	207.0	702.0	414;0	439;965	n	ENSMUSG00000056851.15	Pcbp2	chr15	protein_coding	poly(rC) binding protein 2
known_NIR_5996	chr15	102392675;102394652	102394383;102395523	+	102392675	102395523	cassetteExon	ENSMUST00000229618.2	known	0.31	106.5	241	213;0	241	n	0.27	107.0	289	214;0	289	n	0.32	158.0	339	316;0	339	n	0.35	127.5	234	255;0	234	n	0.34	170.0	323	340;0	323	n	0.33	73.5	149	147;0	149	n	0.34	163.0	311	326;0	311	n	0.31	76.0	168	152;0	168	n	0.33	108.0	215	216;0	215	n	0.32	178.0	383	354;2	383	y	0.29	133.5	328	267;0	328	n	0.32	207.0	439	414;0	439	n	ENSMUSG00000056851.15	Pcbp2	chr15	protein_coding	poly(rC) binding protein 2
known_NIR_5997	chr15	102394387	102395523	+	102394475	102395523	A5SS	ENSMUST00000230129.2	known	0.00	0	233	0	233	n	0.00	0	251	0	251	n	0.00	0	325	0	325	n	0.00	0	267	0	267	n	0.00	0	326	0	326	n	0.00	0	159	0	159	n	0.00	0	366	0	366	n	0.06	9	150	9	150	y	0.00	0	262	0	262	n	0.00	0	372	0	372	n	0.00	0	280	0	280	n	0.00	0	420	0	420	n	ENSMUSG00000056851.15	Pcbp2	chr15	protein_coding	poly(rC) binding protein 2
known_NIR_5998	chr15	102394475	102396640	+	102394475	102395523	3pMXE	ENSMUST00000229958.2	known	0.00	1	233	1	233	n	0.00	0	251	0	251	n	0.01	2	325	2	325	y	0.00	1	267	1	267	n	0.00	0	326	0	326	n	0.01	2	159	2	159	y	0.00	0	366	0	366	n	0.00	0	150	0	150	n	0.00	0	262	0	262	n	0.00	0	372	0	372	n	0.00	0	280	0	280	n	0.00	0	420	0	420	n	ENSMUSG00000056851.15	Pcbp2	chr15	protein_coding	poly(rC) binding protein 2
known_NIR_5999	chr15	102394475	102396640	+	102394475;102395564	102395523;102396640	ES	ENSMUST00000230129.2	known	0.00	1	377.0	1	233;521	n	0.00	0	425.5	0	251;600	n	0.00	2	534.0	2	325;743	y	0.00	1	444.0	1	267;621	n	0.00	0	524.5	0	326;723	n	0.01	2	244.0	2	159;329	y	0.00	0	562.5	0	366;759	n	0.00	0	265.0	0	150;380	n	0.00	0	411.5	0	262;561	n	0.00	0	592.0	0	372;812	n	0.00	0	484.0	0	280;688	n	0.00	0	692.5	0	420;965	n	ENSMUSG00000056851.15	Pcbp2	chr15	protein_coding	poly(rC) binding protein 2
known_NIR_6000	chr15	102394475	102396640	+	102395564	102396640	A5SS&ES	ENSMUST00000229822.2	known	0.00	1	521	1	521	n	0.00	0	600	0	600	n	0.00	2	743	2	743	y	0.00	1	621	1	621	n	0.00	0	723	0	723	n	0.01	2	329	2	329	y	0.00	0	759	0	759	n	0.00	0	380	0	380	n	0.00	0	561	0	561	n	0.00	0	812	0	812	n	0.00	0	688	0	688	n	0.00	0	965	0	965	n	ENSMUSG00000056851.15	Pcbp2	chr15	protein_coding	poly(rC) binding protein 2
known_NIR_6001	chr15	102394652	102395523	+	102394475	102395523	A5SS	ENSMUST00000230129.2	known	0.00	0	233	0	233	n	0.00	0	251	0	251	n	0.00	0	325	0	325	n	0.00	0	267	0	267	n	0.00	0	326	0	326	n	0.00	0	159	0	159	n	0.00	0	366	0	366	n	0.00	0	150	0	150	n	0.00	0	262	0	262	n	0.01	2	372	2	372	y	0.00	0	280	0	280	n	0.00	0	420	0	420	n	ENSMUSG00000056851.15	Pcbp2	chr15	protein_coding	poly(rC) binding protein 2
known_NIR_6002	chr15	102396712	102398187	+	102396712	102397211	3pMXE	ENSMUST00000230129.2	known	0.06	33	522	33	522	y	0.05	30	520	30	520	y	0.06	37	624	37	624	y	0.05	26	551	26	551	y	0.07	44	613	44	613	y	0.07	22	285	22	285	y	0.08	54	638	54	638	y	0.07	22	274	22	274	y	0.05	28	484	28	484	y	0.06	44	676	44	676	y	0.06	33	556	33	556	y	0.06	53	790	53	790	y	ENSMUSG00000056851.15	Pcbp2	chr15	protein_coding	poly(rC) binding protein 2
known_NIR_6003	chr15	102396712	102398187	+	102396712	102398190	A3SS	ENSMUST00000231089.2	known	0.70	33	14	33	14	y	0.71	30	12	30	12	y	0.77	37	11	37	11	y	0.74	26	9	26	9	y	0.94	44	3	44	3	y	0.81	22	5	22	5	y	0.76	54	17	54	17	y	0.88	22	3	22	3	y	0.88	28	4	28	4	y	0.83	44	9	44	9	y	0.80	33	8	33	8	y	0.84	53	10	53	10	y	ENSMUSG00000056851.15	Pcbp2	chr15	protein_coding	poly(rC) binding protein 2
known_NIR_6004	chr15	102396712	102398187	+	102396712;102397249	102397211;102398187	ES	ENSMUST00000077037.13	known	0.07	33	464.5	33	522;407	y	0.06	30	451.5	30	520;383	y	0.06	37	535.5	37	624;447	y	0.06	26	437.5	26	551;324	y	0.08	44	521.0	44	613;429	y	0.08	22	255.5	22	285;226	y	0.09	54	533.5	54	638;429	y	0.08	22	238.0	22	274;202	y	0.06	28	405.5	28	484;327	y	0.07	44	585.5	44	676;495	y	0.06	33	508.0	33	556;460	y	0.07	53	693.5	53	790;597	y	ENSMUSG00000056851.15	Pcbp2	chr15	protein_coding	poly(rC) binding protein 2
known_NIR_6005	chr15	102396712	102398190	+	102396712	102397211	3pMXE	ENSMUST00000230129.2	known	0.03	14	522	14	522	y	0.02	12	520	12	520	y	0.02	11	624	11	624	y	0.02	9	551	9	551	y	0.00	3	613	3	613	y	0.02	5	285	5	285	y	0.03	17	638	17	638	y	0.01	3	274	3	274	y	0.01	4	484	4	484	y	0.01	9	676	9	676	y	0.01	8	556	8	556	y	0.01	10	790	10	790	y	ENSMUSG00000056851.15	Pcbp2	chr15	protein_coding	poly(rC) binding protein 2
known_NIR_6006	chr15	102396712;102397249	102397211;102398190	+	102396712	102398190	cassetteExon	ENSMUST00000231089.2	known	0.96	326.5	14	522;131	14	y	0.96	322.5	12	520;125	12	y	0.97	394.5	11	624;165	11	y	0.98	363.0	9	551;175	9	y	0.99	393.5	3	613;174	3	y	0.97	178.5	5	285;72	5	y	0.96	401.5	17	638;165	17	y	0.98	181.5	3	274;89	3	y	0.99	310.5	4	484;137	4	y	0.98	432.0	9	676;188	9	y	0.98	350.5	8	556;145	8	y	0.98	507.5	10	790;225	10	y	ENSMUSG00000056851.15	Pcbp2	chr15	protein_coding	poly(rC) binding protein 2
known_NIR_6007	chr15	102397249	102398190	+	102397249	102398187	A3SS	ENSMUST00000077037.13	known	0.24	131	407	131	407	y	0.25	125	383	125	383	y	0.27	165	447	165	447	y	0.35	175	324	175	324	y	0.29	174	429	174	429	y	0.24	72	226	72	226	y	0.28	165	429	165	429	y	0.31	89	202	89	202	y	0.30	137	327	137	327	y	0.28	188	495	188	495	y	0.24	145	460	145	460	y	0.27	225	597	225	597	y	ENSMUSG00000056851.15	Pcbp2	chr15	protein_coding	poly(rC) binding protein 2
known_NIR_6008	chr15	102427037	102428910	+	102427037	102427557	3pMXE	ENSMUST00000154451.2	known	0.00	0	45	0	45	n	0.00	0	43	0	43	n	0.00	0	44	0	44	n	0.00	0	50	0	50	n	0.03	1	35	1	35	n	0.00	0	31	0	31	n	0.00	0	56	0	56	n	0.00	0	31	0	31	n	0.00	0	39	0	39	n	0.06	4	59	4	59	y	0.00	0	37	0	37	n	0.00	0	57	0	57	n	ENSMUSG00000023051.12	Tarbp2	chr15	protein_coding	TARBP2, RISC loading complex RNA binding subunit
known_NIR_6009	chr15	102427037	102428910	+	102427037;102427726	102427557;102428910	ES	ENSMUST00000141266.8	known	0.00	0	43.5	0	45;42	n	0.00	0	47.0	0	43;51	n	0.00	0	43.5	0	44;43	n	0.00	0	50.0	0	50;50	n	0.02	1	43.0	1	35;51	n	0.00	0	25.5	0	31;20	n	0.00	0	59.5	0	56;63	n	0.00	0	34.5	0	31;38	n	0.00	0	42.5	0	39;46	n	0.07	4	54.0	4	59;49	y	0.00	0	35.5	0	37;34	n	0.00	0	51.5	0	57;46	n	ENSMUSG00000023051.12	Tarbp2	chr15	protein_coding	TARBP2, RISC loading complex RNA binding subunit
known_NIR_6010	chr15	102427037	102428910	+	102427726	102428910	5pMXE	ENSMUST00000146756.8	known	0.00	0	42	0	42	n	0.00	0	51	0	51	n	0.00	0	43	0	43	n	0.00	0	50	0	50	n	0.02	1	51	1	51	n	0.00	0	20	0	20	n	0.00	0	63	0	63	n	0.00	0	38	0	38	n	0.00	0	46	0	46	n	0.08	4	49	4	49	y	0.00	0	34	0	34	n	0.00	0	46	0	46	n	ENSMUSG00000023051.12	Tarbp2	chr15	protein_coding	TARBP2, RISC loading complex RNA binding subunit
known_NIR_6011	chr15	102427037	102429556	+	102427037	102427557	3pMXE	ENSMUST00000154451.2	known	0.00	0	45	0	45	n	0.02	1	43	1	43	n	0.02	1	44	1	44	n	0.04	2	50	2	50	y	0.00	0	35	0	35	n	0.00	0	31	0	31	n	0.00	0	56	0	56	n	0.03	1	31	1	31	n	0.00	0	39	0	39	n	0.03	2	59	2	59	y	0.00	0	37	0	37	n	0.00	0	57	0	57	n	ENSMUSG00000023051.12	Tarbp2	chr15	protein_coding	TARBP2, RISC loading complex RNA binding subunit
known_NIR_6012	chr15	102427037	102429556	+	102427037;102427726	102427557;102429556	ES	ENSMUST00000131184.8	known	0.00	0	27.0	0	45;9	n	0.04	1	25.0	1	43;7	n	0.04	1	25.0	1	44;6	n	0.06	2	30.5	2	50;11	y	0.00	0	21.5	0	35;8	n	0.00	0	18.5	0	31;6	n	0.00	0	33.0	0	56;10	n	0.04	1	22.5	1	31;14	n	0.00	0	23.0	0	39;7	n	0.05	2	36.0	2	59;13	y	0.00	0	21.5	0	37;6	n	0.00	0	33.5	0	57;10	n	ENSMUSG00000023051.12	Tarbp2	chr15	protein_coding	TARBP2, RISC loading complex RNA binding subunit
known_NIR_6013	chr15	102427037	102429573	+	102427037	102427557	A3SS&ES	ENSMUST00000131184.8	known	0.04	2	45	2	45	y	0.00	0	43	0	43	n	0.00	0	44	0	44	n	0.00	0	50	0	50	n	0.00	0	35	0	35	n	0.00	0	31	0	31	n	0.03	2	56	2	56	y	0.00	0	31	0	31	n	0.00	0	39	0	39	n	0.00	0	59	0	59	n	0.00	0	37	0	37	n	0.00	0	57	0	57	n	ENSMUSG00000023051.12	Tarbp2	chr15	protein_coding	TARBP2, RISC loading complex RNA binding subunit
known_NIR_6014	chr15	102427037;102427726	102427557;102429573	+	102427037	102429573	cassetteExon	ENSMUST00000229805.2	known	0.92	23.5	2	45;2	2	y	1.00	22.5	0	43;2	0	n	1.00	25.0	0	44;6	0	n	1.00	27.0	0	50;4	0	n	1.00	18.5	0	35;2	0	n	1.00	17.0	0	31;3	0	n	0.94	30.0	2	56;4	2	y	1.00	16.0	0	31;1	0	n	1.00	19.5	0	39;0	0	n	1.00	32.0	0	59;5	0	n	1.00	19.0	0	37;1	0	n	1.00	30.0	0	57;3	0	n	ENSMUSG00000023051.12	Tarbp2	chr15	protein_coding	TARBP2, RISC loading complex RNA binding subunit
known_NIR_6015	chr15	102427037;102429012	102428910;102429556	+	102427037	102429556	cassetteExon	ENSMUST00000100168.10	known	1.00	17.5	0	0;35	0	n	0.93	13.5	1	0;27	1	n	0.95	20.5	1	0;41	1	n	0.88	15.0	2	0;30	2	n	1.00	19.5	0	1;38	0	n	1.00	7.5	0	0;15	0	n	1.00	15.0	0	0;30	0	n	0.93	13.0	1	0;26	1	n	1.00	18.5	0	0;37	0	n	0.92	23.0	2	4;42	2	y	1.00	19.5	0	0;39	0	n	1.00	17.0	0	0;34	0	n	ENSMUSG00000023051.12	Tarbp2	chr15	protein_coding	TARBP2, RISC loading complex RNA binding subunit
known_NIR_6016	chr15	102427037;102429012	102428910;102429556	+	102427037;102427726	102427557;102429556	MXE	ENSMUST00000131184.8	known	0.39	17.5	27.0	0;35	45;9	n	0.35	13.5	25.0	0;27	43;7	n	0.45	20.5	25.0	0;41	44;6	n	0.33	15.0	30.5	0;30	50;11	n	0.48	19.5	21.5	1;38	35;8	n	0.29	7.5	18.5	0;15	31;6	n	0.31	15.0	33.0	0;30	56;10	n	0.37	13.0	22.5	0;26	31;14	n	0.45	18.5	23.0	0;37	39;7	n	0.39	23.0	36.0	4;42	59;13	y	0.48	19.5	21.5	0;39	37;6	n	0.34	17.0	33.5	0;34	57;10	n	ENSMUSG00000023051.12	Tarbp2	chr15	protein_coding	TARBP2, RISC loading complex RNA binding subunit
known_NIR_6017	chr15	102427037;102429012	102428910;102429573	+	102427037;102427726	102427557;102429573	MXE	ENSMUST00000134033.8	known	0.00	0.0	23.5	0;0	45;2	n	0.04	1.0	22.5	0;2	43;2	n	0.04	1.0	25.0	0;2	44;6	n	0.07	2.0	27.0	0;4	50;4	n	0.07	1.5	18.5	1;2	35;2	n	0.08	1.5	17.0	0;3	31;3	n	0.08	2.5	30.0	0;5	56;4	n	0.06	1.0	16.0	0;2	31;1	n	0.11	2.5	19.5	0;5	39;0	n	0.12	4.5	32.0	4;5	59;5	y	0.03	0.5	19.0	0;1	37;1	n	0.10	3.5	30.0	0;7	57;3	n	ENSMUSG00000023051.12	Tarbp2	chr15	protein_coding	TARBP2, RISC loading complex RNA binding subunit
known_NIR_6018	chr15	102427279	102427557	+	102427037	102427557	A5SS	ENSMUST00000131184.8	known	0.02	1	45	1	45	n	0.00	0	43	0	43	n	0.00	0	44	0	44	n	0.06	3	50	3	50	y	0.05	2	35	2	35	y	0.03	1	31	1	31	n	0.03	2	56	2	56	y	0.09	3	31	3	31	y	0.05	2	39	2	39	y	0.00	0	59	0	59	n	0.05	2	37	2	37	y	0.05	3	57	3	57	y	ENSMUSG00000023051.12	Tarbp2	chr15	protein_coding	TARBP2, RISC loading complex RNA binding subunit
known_NIR_6019	chr15	102427726	102429556	+	102427726	102428910	3pMXE	ENSMUST00000141266.8	known	0.18	9	42	9	42	y	0.12	7	51	7	51	y	0.12	6	43	6	43	y	0.18	11	50	11	50	y	0.14	8	51	8	51	y	0.23	6	20	6	20	y	0.14	10	63	10	63	y	0.27	14	38	14	38	y	0.13	7	46	7	46	y	0.21	13	49	13	49	y	0.15	6	34	6	34	y	0.18	10	46	10	46	y	ENSMUSG00000023051.12	Tarbp2	chr15	protein_coding	TARBP2, RISC loading complex RNA binding subunit
known_NIR_6020	chr15	102427726	102429573	+	102427726	102428910	3pMXE	ENSMUST00000141266.8	known	0.05	2	42	2	42	y	0.04	2	51	2	51	y	0.12	6	43	6	43	y	0.07	4	50	4	50	y	0.04	2	51	2	51	y	0.13	3	20	3	20	y	0.06	4	63	4	63	y	0.03	1	38	1	38	n	0.00	0	46	0	46	n	0.09	5	49	5	49	y	0.03	1	34	1	34	n	0.06	3	46	3	46	y	ENSMUSG00000023051.12	Tarbp2	chr15	protein_coding	TARBP2, RISC loading complex RNA binding subunit
known_NIR_6021	chr15	102427726	102429573	+	102427726	102429556	A3SS	ENSMUST00000131184.8	known	0.18	2	9	2	9	y	0.22	2	7	2	7	n	0.50	6	6	6	6	y	0.27	4	11	4	11	y	0.20	2	8	2	8	y	0.33	3	6	3	6	n	0.29	4	10	4	10	y	0.07	1	14	1	14	n	0.00	0	7	0	7	n	0.28	5	13	5	13	y	0.14	1	6	1	6	n	0.23	3	10	3	10	y	ENSMUSG00000023051.12	Tarbp2	chr15	protein_coding	TARBP2, RISC loading complex RNA binding subunit
known_NIR_6022	chr15	102427726	102429573	+	102427726;102429012	102428910;102429573	ES	ENSMUST00000154948.8	known	0.09	2	21.0	2	42;0	n	0.07	2	26.5	2	51;2	y	0.21	6	22.5	6	43;2	y	0.13	4	27.0	4	50;4	y	0.07	2	26.5	2	51;2	y	0.21	3	11.5	3	20;3	y	0.11	4	34.0	4	63;5	y	0.05	1	20.0	1	38;2	n	0.00	0	25.5	0	46;5	n	0.16	5	27.0	5	49;5	y	0.05	1	17.5	1	34;1	n	0.10	3	26.5	3	46;7	y	ENSMUSG00000023051.12	Tarbp2	chr15	protein_coding	TARBP2, RISC loading complex RNA binding subunit
known_NIR_6023	chr15	102427726;102429012	102428910;102429556	+	102427726	102429556	cassetteExon	ENSMUST00000131184.8	known	0.81	38.5	9	42;35	9	y	0.85	39.0	7	51;27	7	y	0.88	42.0	6	43;41	6	y	0.78	40.0	11	50;30	11	y	0.85	44.5	8	51;38	8	y	0.74	17.5	6	20;15	6	y	0.82	46.5	10	63;30	10	y	0.70	32.0	14	38;26	14	y	0.86	41.5	7	46;37	7	y	0.78	45.5	13	49;42	13	y	0.86	36.5	6	34;39	6	y	0.80	40.0	10	46;34	10	y	ENSMUSG00000023051.12	Tarbp2	chr15	protein_coding	TARBP2, RISC loading complex RNA binding subunit
known_NIR_6024	chr15	102429012	102429573	+	102429012	102429556	A3SS	ENSMUST00000150393.9	known	0.00	0	35	0	35	n	0.07	2	27	2	27	y	0.05	2	41	2	41	y	0.12	4	30	4	30	y	0.05	2	38	2	38	y	0.17	3	15	3	15	y	0.14	5	30	5	30	y	0.07	2	26	2	26	y	0.12	5	37	5	37	y	0.11	5	42	5	42	y	0.03	1	39	1	39	n	0.17	7	34	7	34	y	ENSMUSG00000023051.12	Tarbp2	chr15	protein_coding	TARBP2, RISC loading complex RNA binding subunit
known_NIR_6025	chr15	102442873	102446618	-	102434547	102446618	A3SS	ENSMUST00000184906.8	known	1.00	6	0	6	0	n	0.83	10	2	10	2	y	1.00	14	0	14	0	n	1.00	22	0	22	0	n	0.90	18	2	18	2	y	1.00	13	0	13	0	n	1.00	16	0	16	0	n	1.00	14	0	14	0	n	1.00	10	0	10	0	n	0.95	18	1	18	1	n	1.00	6	0	6	0	n	1.00	20	0	20	0	n	ENSMUSG00000099083.8	Atf7	chr15	protein_coding	activating transcription factor 7
known_NIR_6026	chr15	10249735	10293737	+	10177957	10293737	A5SS	ENSMUST00000005400.13	known	0.13	8	54	8	54	y	0.05	2	41	2	41	y	0.75	3	1	3	1	n	0.17	10	50	10	50	y	0.17	11	53	11	53	y	0.67	4	2	4	2	n	0.21	15	55	15	55	y	0.00	0	12	0	12	n	0.08	5	56	5	56	y	0.06	6	99	6	99	y	0.05	3	57	3	57	y	0.12	12	85	12	85	y	ENSMUSG00000005268.21	Prlr	chr15	protein_coding	prolactin receptor
known_NIR_6027	chr15	10249735	10293737	+	10224182	10293737	A5SS	ENSMUST00000128450.8	known	0.11	8	65	8	65	y	0.04	2	48	2	48	y	0.60	3	2	3	2	n	0.11	10	77	10	77	y	0.12	11	77	11	77	y	0.57	4	3	4	3	n	0.23	15	49	15	49	y	0.00	0	3	0	3	n	0.07	5	71	5	71	y	0.06	6	89	6	89	y	0.04	3	71	3	71	y	0.08	12	134	12	134	y	ENSMUSG00000005268.21	Prlr	chr15	protein_coding	prolactin receptor
known_NIR_6028	chr15	102502175	102533797	-	102502175	102533474	5pMXE	ENSMUST00000184772.2	known	0.10	1	9	1	9	n	1.00	2	0	2	0	n	0.36	5	9	5	9	y	0.70	7	3	7	3	y	0.56	5	4	5	4	n	0.33	1	2	1	2	n	1.00	2	0	2	0	n	0.17	1	5	1	5	n	1.00	3	0	3	0	n	0.64	7	4	7	4	y	0.50	4	4	4	4	n	0.50	5	5	5	5	y	ENSMUSG00000052414.10	Gm28047	chr15	protein_coding	predicted gene, 28047
known_NIR_6029	chr15	102576214	102580159	-	102576214	102579453	5pMXE	ENSMUST00000185641.7	known	0.01	2	230	2	230	y	0.00	0	244	0	244	n	0.00	1	301	1	301	n	0.01	2	304	2	304	y	0.01	3	328	3	328	y	0.01	1	175	1	175	n	0.00	1	356	1	356	n	0.00	0	174	0	174	n	0.01	3	264	3	264	y	0.01	4	351	4	351	y	0.00	1	303	1	303	n	0.02	8	367	8	367	y	ENSMUSG00000062683.12	Atp5g2	chr15	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)
known_NIR_6030	chr15	103066345	103071699	-	103066345;103066654	103066584;103071699	ES	ENSMUST00000229371.2	known	0.53	4	3.5	4	6;1	n	0.17	1	5.0	1	6;4	n	0.31	4	9.0	4	16;2	y	0.43	5	6.5	5	8;5	y	0.23	3	10.0	3	12;8	y	0.40	4	6.0	4	7;5	y	0.44	6	7.5	6	8;7	y	0.28	4	10.5	4	11;10	y	0.24	2	6.5	2	9;4	y	0.00	0	8.5	0	10;7	n	0.00	0	3.0	0	4;2	n	0.34	5	9.5	5	14;5	y	ENSMUSG00000036061.11	Smug1	chr15	protein_coding	single-strand selective monofunctional uracil DNA glycosylase
known_NIR_6031	chr15	103121681	103123449	-	103121681	103148160	A5SS	ENSMUST00000118152.8	known	0.16	4	21	4	21	y	0.14	3	18	3	18	y	0.17	5	25	5	25	y	0.08	3	33	3	33	y	0.21	6	22	6	22	y	0.06	1	15	1	15	n	0.32	11	23	11	23	y	0.38	8	13	8	13	y	0.21	3	11	3	11	y	0.23	8	27	8	27	y	0.21	6	23	6	23	y	0.15	4	22	4	22	y	ENSMUSG00000009575.15	Cbx5	chr15	protein_coding	chromobox 5
known_NIR_6032	chr15	103121681	103123695	-	103121681	103148160	A5SS	ENSMUST00000118152.8	known	0.00	0	21	0	21	n	0.00	0	18	0	18	n	0.07	2	25	2	25	y	0.00	0	33	0	33	n	0.00	0	22	0	22	n	0.12	2	15	2	15	y	0.04	1	23	1	23	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	27	0	27	n	0.00	0	23	0	23	n	0.00	0	22	0	22	n	ENSMUSG00000009575.15	Cbx5	chr15	protein_coding	chromobox 5
known_NIR_6033	chr15	10314359	10317594	+	10314359	10317589	A3SS	ENSMUST00000005400.13	known	0.00	0	135	0	135	n	0.00	0	107	0	107	n	0.00	0	9	0	9	n	0.00	0	132	0	132	n	0.07	8	114	8	114	y	0.00	0	7	0	7	n	0.00	0	114	0	114	n	0.00	0	20	0	20	n	0.00	0	131	0	131	n	0.00	0	218	0	218	n	0.02	3	161	3	161	y	0.00	0	265	0	265	n	ENSMUSG00000005268.21	Prlr	chr15	protein_coding	prolactin receptor
known_NIR_6034	chr15	103151145	103151349	+	103151145	103152386	A3SS	ENSMUST00000231141.2	known	1.00	7	0	7	0	n	1.00	5	0	5	0	n	0.94	15	1	15	1	n	1.00	6	0	6	0	n	1.00	6	0	6	0	n	0.60	3	2	3	2	n	0.80	12	3	12	3	y	1.00	5	0	5	0	n	1.00	6	0	6	0	n	1.00	5	0	5	0	n	0.91	10	1	10	1	n	0.93	13	1	13	1	n	ENSMUSG00000046434.17	Hnrnpa1	chr15	protein_coding	heterogeneous nuclear ribonucleoprotein A1
known_NIR_6035	chr15	103151145	103152052	+	103151145;103151507	103151349;103152052	ES	ENSMUST00000036004.16	known	0.94	105	7.0	105	7;7	y	0.96	131	5.5	131	5;6	y	0.94	186	11.5	186	15;8	y	0.96	120	5.5	120	6;5	y	0.96	173	8.0	173	6;10	y	0.96	87	3.5	87	3;4	y	0.92	144	12.0	144	12;12	y	0.96	91	3.5	91	5;2	y	0.95	84	4.0	84	6;2	y	0.96	117	4.5	117	5;4	y	0.93	111	8.0	111	10;6	y	0.93	157	12.0	157	13;11	y	ENSMUSG00000046434.17	Hnrnpa1	chr15	protein_coding	heterogeneous nuclear ribonucleoprotein A1
known_NIR_6036	chr15	103151145	103152386	+	103151145;103152207	103152052;103152386	ES	ENSMUST00000230171.2	known	0.00	0	146.0	0	105;187	n	0.00	0	162.5	0	131;194	n	0.00	1	250.5	1	186;315	n	0.00	0	150.5	0	120;181	n	0.00	0	219.5	0	173;266	n	0.02	2	112.5	2	87;138	y	0.01	3	221.5	3	144;299	y	0.00	0	124.5	0	91;158	n	0.00	0	123.5	0	84;163	n	0.00	0	173.5	0	117;230	n	0.01	1	140.0	1	111;169	n	0.01	1	185.5	1	157;214	n	ENSMUSG00000046434.17	Hnrnpa1	chr15	protein_coding	heterogeneous nuclear ribonucleoprotein A1
known_NIR_6037	chr15	103152455	103154773	+	103152455	103152683	3pMXE	ENSMUST00000036004.16	known	0.19	30	126	30	126	y	0.15	27	159	27	159	y	0.17	41	207	41	207	y	0.14	18	112	18	112	y	0.20	43	172	43	172	y	0.10	11	100	11	100	y	0.24	49	157	49	157	y	0.15	24	140	24	140	y	0.32	37	79	37	79	y	0.18	36	162	36	162	y	0.28	42	107	42	107	y	0.33	61	126	61	126	y	ENSMUSG00000046434.17	Hnrnpa1	chr15	protein_coding	heterogeneous nuclear ribonucleoprotein A1
known_NIR_6038	chr15	103152455	103154773	+	103152455;103154393	103152683;103154773	ES	ENSMUST00000230489.2	known	0.32	30	63.0	30	126;0	n	0.25	27	79.5	27	159;0	n	0.28	41	103.5	41	207;0	n	0.24	18	56.0	18	112;0	n	0.33	43	87.0	43	172;2	y	0.18	11	50.0	11	100;0	n	0.38	49	78.5	49	157;0	n	0.26	24	70.0	24	140;0	n	0.48	37	40.5	37	79;2	y	0.31	36	81.0	36	162;0	n	0.44	42	53.5	42	107;0	n	0.49	61	63.5	61	126;1	n	ENSMUSG00000046434.17	Hnrnpa1	chr15	protein_coding	heterogeneous nuclear ribonucleoprotein A1
known_NIR_6039	chr15	103154393	103154773	+	103152455	103154773	A5SS	ENSMUST00000230171.2	known	0.00	0	30	0	30	n	0.00	0	27	0	27	n	0.00	0	41	0	41	n	0.00	0	18	0	18	n	0.04	2	43	2	43	y	0.00	0	11	0	11	n	0.00	0	49	0	49	n	0.00	0	24	0	24	n	0.05	2	37	2	37	y	0.00	0	36	0	36	n	0.00	0	42	0	42	n	0.02	1	61	1	61	n	ENSMUSG00000046434.17	Hnrnpa1	chr15	protein_coding	heterogeneous nuclear ribonucleoprotein A1
known_NIR_6040	chr15	103228827	103231818	-	103228827	103241492	A5SS	ENSMUST00000229373.2	known	0.61	22	14	22	14	y	0.62	10	6	10	6	y	0.81	25	6	25	6	y	0.82	33	7	33	7	y	0.76	35	11	35	11	y	0.75	9	3	9	3	y	0.67	26	13	26	13	y	0.89	24	3	24	3	y	0.78	21	6	21	6	y	0.79	23	6	23	6	y	0.71	25	10	25	10	y	0.68	19	9	19	9	y	ENSMUSG00000000552.11	Zfp385a	chr15	protein_coding	zinc finger protein 385A
known_NIR_6041	chr15	10326631	10341860	+	10326631	10328367	3pMXE	ENSMUST00000005400.13	known	0.40	10	15	10	15	y	0.64	9	5	9	5	y	0.00	0	3	0	3	n	0.44	11	14	11	14	y	0.38	6	10	6	10	y	0.00	0	1	0	1	n	0.53	17	15	17	15	y	0.33	2	4	2	4	n	0.57	17	13	17	13	y	0.54	15	13	15	13	y	0.67	16	8	16	8	y	0.57	20	15	20	15	y	ENSMUSG00000005268.21	Prlr	chr15	protein_coding	prolactin receptor
known_NIR_6042	chr15	10326631	10345744	+	10326631	10328367	3pMXE	ENSMUST00000005400.13	known	0.25	5	15	5	15	y	0.50	5	5	5	5	y	0.00	0	3	0	3	n	0.26	5	14	5	14	y	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.12	2	15	2	15	y	0.00	0	4	0	4	n	0.13	2	13	2	13	y	0.28	5	13	5	13	y	0.38	5	8	5	8	y	0.25	5	15	5	15	y	ENSMUSG00000005268.21	Prlr	chr15	protein_coding	prolactin receptor
known_NIR_6043	chr15	10326631	10345744	+	10326631	10341860	A3SS&ES	ENSMUST00000145428.8	known	0.33	5	10	5	10	y	0.36	5	9	5	9	y	-	-	-	-	-	-	0.31	5	11	5	11	y	0.00	0	6	0	6	n	-	-	-	-	-	-	0.11	2	17	2	17	y	0.00	0	2	0	2	n	0.11	2	17	2	17	y	0.25	5	15	5	15	y	0.24	5	16	5	16	y	0.20	5	20	5	20	y	ENSMUSG00000005268.21	Prlr	chr15	protein_coding	prolactin receptor
known_NIR_6044	chr15	10326631	10346496	+	10326631	10328367	3pMXE	ENSMUST00000005400.13	known	0.92	182	15	182	15	y	0.96	126	5	126	5	y	0.70	7	3	7	3	y	0.91	136	14	136	14	y	0.92	117	10	117	10	y	0.80	4	1	4	1	n	0.89	118	15	118	15	y	0.71	10	4	10	4	y	0.92	149	13	149	13	y	0.95	244	13	244	13	y	0.96	171	8	171	8	y	0.95	265	15	265	15	y	ENSMUSG00000005268.21	Prlr	chr15	protein_coding	prolactin receptor
known_NIR_6045	chr15	10326631	10346496	+	10326631	10341860	3pMXE	ENSMUST00000128450.8	known	0.95	182	10	182	10	y	0.93	126	9	126	9	y	1.00	7	0	7	0	n	0.93	136	11	136	11	y	0.95	117	6	117	6	y	1.00	4	0	4	0	n	0.87	118	17	118	17	y	0.83	10	2	10	2	y	0.90	149	17	149	17	y	0.94	244	15	244	15	y	0.91	171	16	171	16	y	0.93	265	20	265	20	y	ENSMUSG00000005268.21	Prlr	chr15	protein_coding	prolactin receptor
known_NIR_6046	chr15	10326631	10346496	+	10326631	10345744	3pMXE	ENSMUST00000148257.8	known	0.97	182	5	182	5	y	0.96	126	5	126	5	y	1.00	7	0	7	0	n	0.96	136	5	136	5	y	1.00	117	0	117	0	n	1.00	4	0	4	0	n	0.98	118	2	118	2	y	1.00	10	0	10	0	n	0.99	149	2	149	2	y	0.98	244	5	244	5	y	0.97	171	5	171	5	y	0.98	265	5	265	5	y	ENSMUSG00000005268.21	Prlr	chr15	protein_coding	prolactin receptor
known_NIR_6047	chr15	10326631	10346496	+	10326631;10341967	10341860;10346496	ES	ENSMUST00000137867.8	known	0.97	182	5.5	182	10;1	n	0.96	126	5.5	126	9;2	y	1.00	7	0.0	7	0;0	n	0.96	136	6.0	136	11;1	n	0.97	117	3.0	117	6;0	n	1.00	4	0.0	4	0;0	n	0.93	118	9.5	118	17;2	y	0.91	10	1.0	10	2;0	n	0.95	149	8.5	149	17;0	n	0.97	244	8.0	244	15;1	n	0.95	171	9.0	171	16;2	y	0.96	265	11.5	265	20;3	y	ENSMUSG00000005268.21	Prlr	chr15	protein_coding	prolactin receptor
known_NIR_6048	chr15	10326631	10346496	+	10326631;10342110	10341860;10346496	ES	ENSMUST00000145428.8	known	0.95	182	9.0	182	10;8	y	0.95	126	7.0	126	9;5	y	1.00	7	0.0	7	0;0	n	0.95	136	7.5	136	11;4	y	0.96	117	5.5	117	6;5	y	1.00	4	0.0	4	0;0	n	0.93	118	9.5	118	17;2	y	0.77	10	3.0	10	2;4	y	0.94	149	10.0	149	17;3	y	0.95	244	11.5	244	15;8	y	0.95	171	9.5	171	16;3	y	0.95	265	13.5	265	20;7	y	ENSMUSG00000005268.21	Prlr	chr15	protein_coding	prolactin receptor
known_NIR_6049	chr15	10326631	10371685	+	10326631	10328367	3pMXE	ENSMUST00000005400.13	known	0.21	4	15	4	15	y	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.12	2	14	2	14	y	0.09	1	10	1	10	n	0.00	0	1	0	1	n	0.12	2	15	2	15	y	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.07	1	13	1	13	n	0.11	1	8	1	8	n	0.17	3	15	3	15	y	ENSMUSG00000005268.21	Prlr	chr15	protein_coding	prolactin receptor
known_NIR_6050	chr15	10326631	10371685	+	10326631	10341860	3pMXE	ENSMUST00000128450.8	known	0.29	4	10	4	10	y	0.10	1	9	1	9	n	-	-	-	-	-	-	0.15	2	11	2	11	y	0.14	1	6	1	6	n	-	-	-	-	-	-	0.11	2	17	2	17	y	0.00	0	2	0	2	n	0.00	0	17	0	17	n	0.06	1	15	1	15	n	0.06	1	16	1	16	n	0.13	3	20	3	20	y	ENSMUSG00000005268.21	Prlr	chr15	protein_coding	prolactin receptor
known_NIR_6051	chr15	10326631	10371685	+	10326631	10346496	3pMXE	ENSMUST00000128921.8	known	0.02	4	182	4	182	y	0.01	1	126	1	126	n	0.00	0	7	0	7	n	0.01	2	136	2	136	y	0.01	1	117	1	117	n	0.00	0	4	0	4	n	0.02	2	118	2	118	y	0.00	0	10	0	10	n	0.00	0	149	0	149	n	0.00	1	244	1	244	n	0.01	1	171	1	171	n	0.01	3	265	3	265	y	ENSMUSG00000005268.21	Prlr	chr15	protein_coding	prolactin receptor
known_NIR_6052	chr15	10341967	10346496	+	10342110	10346496	A5SS	ENSMUST00000145428.8	known	0.11	1	8	1	8	n	0.29	2	5	2	5	n	-	-	-	-	-	-	0.20	1	4	1	4	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.50	2	2	2	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.11	1	8	1	8	n	0.40	2	3	2	3	n	0.30	3	7	3	7	y	ENSMUSG00000005268.21	Prlr	chr15	protein_coding	prolactin receptor
known_NIR_6053	chr15	10358767	10371685	+	10326631	10371685	A5SS	ENSMUST00000157020.2	known	0.98	196	4	196	4	y	0.99	146	1	146	1	n	1.00	187	0	187	0	n	0.99	246	2	246	2	y	1.00	313	1	313	1	n	1.00	127	0	127	0	n	0.99	277	2	277	2	y	1.00	183	0	183	0	n	1.00	207	0	207	0	n	1.00	291	1	291	1	n	0.99	167	1	167	1	n	0.99	285	3	285	3	y	ENSMUSG00000094814.2	Gm21973	chr15	protein_coding	predicted gene 21973
known_NIR_6054	chr15	10373954	10377461	+	10373954	10374082	3pMXE	ENSMUST00000110540.8	known	0.88	123	16	123	16	y	0.88	110	15	110	15	y	0.81	92	21	92	21	y	0.94	218	15	218	15	y	0.89	230	28	230	28	y	0.86	75	12	75	12	y	0.86	180	29	180	29	y	0.83	105	21	105	21	y	0.85	144	26	144	26	y	0.91	227	22	227	22	y	0.87	137	21	137	21	y	0.82	225	48	225	48	y	ENSMUSG00000089678.9	Agxt2	chr15	protein_coding	alanine-glyoxylate aminotransferase 2
known_NIR_6055	chr15	10483492	10485821	-	10485502	10485821	A3SS&ES	ENSMUST00000169050.8	known	1.00	61	0	61	0	n	1.00	47	0	47	0	n	1.00	126	0	126	0	n	1.00	59	0	59	0	n	1.00	98	0	98	0	n	0.98	56	1	56	1	n	0.99	85	1	85	1	n	1.00	54	0	54	0	n	0.95	54	3	54	3	y	1.00	79	0	79	0	n	1.00	68	0	68	0	n	0.99	68	1	68	1	n	ENSMUSG00000022247.13	Brix1	chr15	protein_coding	BRX1, biogenesis of ribosomes
known_NIR_6056	chr15	10486802	10490342	+	10486802;10488184	10488076;10490342	ES	ENSMUST00000022856.15	known	0.14	3	18.0	3	16;20	y	0.00	0	9.5	0	9;10	n	0.00	0	22.5	0	22;23	n	0.00	0	17.5	0	26;9	n	0.00	0	27.5	0	27;28	n	0.00	0	15.5	0	19;12	n	0.00	0	20.0	0	24;16	n	0.00	0	5.0	0	2;8	n	0.00	0	14.5	0	19;10	n	0.00	0	24.0	0	26;22	n	0.00	0	10.0	0	6;14	n	0.00	0	26.0	0	28;24	n	ENSMUSG00000022248.15	Rad1	chr15	protein_coding	RAD1 checkpoint DNA exonuclease
known_NIR_6057	chr15	10490600	10492874	+	10490600	10492851	A3SS	ENSMUST00000022856.15	known	0.00	0	17	0	17	n	0.00	0	30	0	30	n	0.29	10	24	10	24	y	0.17	4	20	4	20	y	0.14	4	24	4	24	y	0.00	0	20	0	20	n	0.00	0	32	0	32	n	0.07	1	13	1	13	n	0.09	2	21	2	21	y	0.12	4	28	4	28	y	0.22	7	25	7	25	y	0.00	0	15	0	15	n	ENSMUSG00000022248.15	Rad1	chr15	protein_coding	RAD1 checkpoint DNA exonuclease
known_NIR_6058	chr15	10588010	10591673	-	10588010;10589431	10589345;10591673	ES	ENSMUST00000090339.11	known	0.17	4	20.0	4	17;23	y	0.07	1	14.0	1	20;8	n	0.21	7	26.5	7	35;18	y	0.04	1	24.0	1	22;26	n	0.02	1	47.5	1	66;29	n	0.05	1	20.0	1	19;21	n	0.04	1	27.0	1	29;25	n	0.18	7	32.5	7	25;40	y	0.05	1	20.5	1	19;22	n	0.03	1	30.5	1	37;24	n	0.00	0	18.5	0	23;14	n	0.04	1	22.5	1	20;25	n	ENSMUSG00000022246.15	Rai14	chr15	protein_coding	retinoic acid induced 14
known_NIR_6059	chr15	10715090	10716734	+	10715066	10716734	A5SS	ENSMUST00000180604.2	known	0.26	5	14	5	14	y	0.30	3	7	3	7	y	0.33	9	18	9	18	y	0.17	2	10	2	10	y	0.35	9	17	9	17	y	0.65	13	7	13	7	y	0.22	5	18	5	18	y	0.28	5	13	5	13	y	0.57	8	6	8	6	y	0.50	10	10	10	10	y	0.18	3	14	3	14	y	0.69	9	4	9	4	y	ENSMUSG00000096971.3	4930556M19Rik	chr15	lncRNA	RIKEN cDNA 4930556M19 gene
known_NIR_6060	chr15	10716804	10719150	+	10716804	10718340	3pMXE	ENSMUST00000226989.2	known	0.50	5	5	5	5	y	0.00	0	4	0	4	n	0.44	8	10	8	10	y	0.33	5	10	5	10	y	0.33	10	20	10	20	y	0.65	11	6	11	6	y	0.42	8	11	8	11	y	0.43	6	8	6	8	y	0.56	5	4	5	4	n	0.54	7	6	7	6	y	0.46	6	7	6	7	y	0.55	6	5	6	5	y	ENSMUSG00000096971.3	4930556M19Rik	chr15	lncRNA	RIKEN cDNA 4930556M19 gene
known_NIR_6061	chr15	10983579	10984743	+	10983579	10984772	A3SS	ENSMUST00000070877.7	known	0.00	1	301	1	301	n	0.02	7	301	7	301	y	0.00	1	210	1	210	n	0.02	8	505	8	505	y	0.01	6	441	6	441	y	0.00	0	203	0	203	n	0.01	4	437	4	437	y	0.01	3	202	3	202	y	0.00	1	368	1	368	n	0.01	9	628	9	628	y	0.00	0	362	0	362	n	0.01	4	510	4	510	y	ENSMUSG00000022244.8	Amacr	chr15	protein_coding	alpha-methylacyl-CoA racemase
known_NIR_6062	chr15	11393366	11394310	-	11393362	11394310	A3SS	ENSMUST00000228814.2	known	0.99	67	1	67	1	n	1.00	41	0	41	0	n	1.00	146	0	146	0	n	1.00	126	0	126	0	n	1.00	179	0	179	0	n	1.00	66	0	66	0	n	1.00	111	0	111	0	n	1.00	82	0	82	0	n	1.00	97	0	97	0	n	1.00	115	0	115	0	n	0.97	78	2	78	2	y	0.98	122	2	122	2	y	ENSMUSG00000022241.7	Tars	chr15	protein_coding	threonyl-tRNA synthetase
known_NIR_6063	chr15	12118033	12136482	+	12118033;12118424	12118325;12136482	ES	ENSMUST00000122941.8	known	0.13	2	13.0	2	18;8	y	0.00	0	5.5	0	6;5	n	0.00	0	37.5	0	43;32	n	0.00	0	15.0	0	22;8	n	0.00	0	28.0	0	30;26	n	0.00	0	15.5	0	15;16	n	0.00	0	20.0	0	24;16	n	0.00	0	19.5	0	28;11	n	0.00	0	13.5	0	18;9	n	0.00	0	16.5	0	19;14	n	0.00	0	13.5	0	19;8	n	0.00	0	16.0	0	18;14	n	ENSMUSG00000022201.17	Zfr	chr15	protein_coding	zinc finger RNA binding protein
known_NIR_6064	chr15	12135376	12136482	+	12118424	12136482	A5SS	ENSMUST00000122941.8	known	0.27	3	8	3	8	y	0.17	1	5	1	5	n	0.16	6	32	6	32	y	0.33	4	8	4	8	y	0.21	7	26	7	26	y	0.20	4	16	4	16	y	0.00	0	16	0	16	n	0.08	1	11	1	11	n	0.10	1	9	1	9	n	0.22	4	14	4	14	y	0.38	5	8	5	8	y	0.00	0	14	0	14	n	ENSMUSG00000022201.17	Zfr	chr15	protein_coding	zinc finger RNA binding protein
known_NIR_6065	chr15	12160776	12162185	+	12160776	12162200	A3SS	ENSMUST00000122941.8	known	0.02	1	49	1	49	n	0.00	0	33	0	33	n	0.00	0	81	0	81	n	0.03	2	56	2	56	y	0.00	0	73	0	73	n	0.00	0	40	0	40	n	0.00	0	58	0	58	n	0.02	1	48	1	48	n	0.00	0	47	0	47	n	0.00	0	68	0	68	n	0.00	0	42	0	42	n	0.03	2	63	2	63	y	ENSMUSG00000022201.17	Zfr	chr15	protein_coding	zinc finger RNA binding protein
known_NIR_6066	chr15	12166372	12171845	+	12166372;12170999	12170902;12171845	ES	ENSMUST00000122941.8	known	0.02	1	45.0	1	44;46	n	0.03	1	31.5	1	28;35	n	0.12	10	75.0	10	73;77	y	0.09	6	61.5	6	70;53	y	0.07	6	82.5	6	91;74	y	0.07	3	38.5	3	44;33	y	0.05	3	53.5	3	64;43	y	0.13	5	33.5	5	35;32	y	0.10	5	46.5	5	48;45	y	0.11	7	59.5	7	60;59	y	0.00	0	45.0	0	44;46	n	0.00	0	59.0	0	56;62	n	ENSMUSG00000022201.17	Zfr	chr15	protein_coding	zinc finger RNA binding protein
known_NIR_6067	chr15	12166372	12171845	+	12170999	12171845	5pMXE	ENSMUST00000147492.2	known	0.02	1	46	1	46	n	0.03	1	35	1	35	n	0.11	10	77	10	77	y	0.10	6	53	6	53	y	0.07	6	74	6	74	y	0.08	3	33	3	33	y	0.07	3	43	3	43	y	0.14	5	32	5	32	y	0.10	5	45	5	45	y	0.11	7	59	7	59	y	0.00	0	46	0	46	n	0.00	0	62	0	62	n	ENSMUSG00000022201.17	Zfr	chr15	protein_coding	zinc finger RNA binding protein
known_NIR_6068	chr15	12236206	12238015	+	12236234	12238015	A5SS	ENSMUST00000038172.16	known	0.33	2	4	2	4	n	0.50	2	2	2	2	n	0.33	6	12	6	12	y	0.10	1	9	1	9	n	0.00	0	12	0	12	n	0.50	4	4	4	4	n	0.54	7	6	7	6	y	0.17	1	5	1	5	n	0.75	3	1	3	1	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.62	5	3	5	3	n	ENSMUSG00000039458.16	Mtmr12	chr15	protein_coding	myotubularin related protein 12
known_NIR_6069	chr15	12265797	12266698	+	12265797	12266693	A3SS	ENSMUST00000038172.16	known	0.25	2	6	2	6	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.33	2	4	2	4	n	0.10	2	18	2	18	y	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.14	2	12	2	12	y	0.00	0	4	0	4	n	ENSMUSG00000039458.16	Mtmr12	chr15	protein_coding	myotubularin related protein 12
known_NIR_6070	chr15	12322042	12339714	+	12322042	12349454	A3SS	ENSMUST00000226517.2	known	1.00	110	0	110	0	n	1.00	89	0	89	0	n	0.97	196	7	196	7	y	0.98	151	3	151	3	y	0.97	222	7	222	7	y	0.98	126	3	126	3	y	0.99	136	1	136	1	n	0.98	99	2	99	2	y	0.96	111	5	111	5	y	1.00	156	0	156	0	n	0.94	102	6	102	6	y	0.95	122	6	122	6	y	ENSMUSG00000022200.9	Golph3	chr15	protein_coding	golgi phosphoprotein 3
known_NIR_6071	chr15	12343237	12349454	+	12322042	12349454	A5SS	ENSMUST00000226517.2	known	1.00	184	0	184	0	n	1.00	128	0	128	0	n	0.98	293	7	293	7	y	0.99	243	3	243	3	y	0.97	253	7	253	7	y	0.98	151	3	151	3	y	1.00	248	1	248	1	n	0.99	202	2	202	2	y	0.97	149	5	149	5	y	1.00	210	0	210	0	n	0.96	152	6	152	6	y	0.98	246	6	246	6	y	ENSMUSG00000022200.9	Golph3	chr15	protein_coding	golgi phosphoprotein 3
known_NIR_6072	chr15	12343237	12349454	+	12343237	12343359	3pMXE	ENSMUST00000228301.2	known	0.96	184	7	184	7	y	0.95	128	7	128	7	y	0.98	293	7	293	7	y	0.98	243	4	243	4	y	0.97	253	9	253	9	y	0.98	151	3	151	3	y	0.97	248	8	248	8	y	0.99	202	3	202	3	y	0.95	149	8	149	8	y	0.96	210	9	210	9	y	0.98	152	3	152	3	y	0.97	246	8	246	8	y	ENSMUSG00000022200.9	Golph3	chr15	protein_coding	golgi phosphoprotein 3
known_NIR_6073	chr15	12343237;12343407	12343359;12349454	+	12343237	12349454	cassetteExon	ENSMUST00000059680.7	known	0.02	4.5	184	7;2	184	y	0.03	4.5	128	7;2	128	y	0.03	8.0	293	7;9	293	y	0.01	3.0	243	4;2	243	y	0.02	6.0	253	9;3	253	y	0.01	2.0	151	3;1	151	n	0.02	6.0	248	8;4	248	y	0.02	3.5	202	3;4	202	y	0.03	5.0	149	8;2	149	y	0.03	6.0	210	9;3	210	y	0.03	4.0	152	3;5	152	y	0.02	5.5	246	8;3	246	y	ENSMUSG00000022200.9	Golph3	chr15	protein_coding	golgi phosphoprotein 3
known_NIR_6074	chr15	12343407	12349454	+	12322042	12349454	A5SS	ENSMUST00000226517.2	known	1.00	2	0	2	0	n	1.00	2	0	2	0	n	0.56	9	7	9	7	y	0.40	2	3	2	3	n	0.30	3	7	3	7	y	0.25	1	3	1	3	n	0.80	4	1	4	1	n	0.67	4	2	4	2	n	0.29	2	5	2	5	n	1.00	3	0	3	0	n	0.45	5	6	5	6	y	0.33	3	6	3	6	n	ENSMUSG00000022200.9	Golph3	chr15	protein_coding	golgi phosphoprotein 3
known_NIR_6075	chr15	12813786	12814277	-	12812158	12814277	A3SS	ENSMUST00000057256.5	known	0.00	0	31	0	31	n	0.00	0	23	0	23	n	0.04	2	50	2	50	y	0.00	0	44	0	44	n	0.02	1	52	1	52	n	0.00	0	30	0	30	n	0.05	2	39	2	39	y	0.00	0	25	0	25	n	0.00	0	29	0	29	n	0.06	2	34	2	34	y	0.00	0	30	0	30	n	0.00	0	39	0	39	n	ENSMUSG00000022195.8	6030458C11Rik	chr15	protein_coding	RIKEN cDNA 6030458C11 gene
known_NIR_6076	chr15	12818213	12821490	-	12818370	12821490	A3SS	ENSMUST00000057256.5	known	0.00	0	20	0	20	n	0.07	1	13	1	13	n	0.16	5	27	5	27	y	0.00	0	30	0	30	n	0.00	0	25	0	25	n	0.00	0	23	0	23	n	0.00	0	34	0	34	n	0.07	2	27	2	27	y	0.00	0	8	0	8	n	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.00	0	20	0	20	n	ENSMUSG00000022195.8	6030458C11Rik	chr15	protein_coding	RIKEN cDNA 6030458C11 gene
known_NIR_6077	chr15	12821639	12824553	-	12821639;12823792	12823647;12824553	ES	ENSMUST00000057256.5	known	0.00	0	15.0	0	16;14	n	0.00	0	8.0	0	10;6	n	0.15	4	23.5	4	28;19	y	0.09	2	21.5	2	22;21	y	0.04	1	25.5	1	22;29	n	0.00	0	16.0	0	26;6	n	0.00	0	27.0	0	30;24	n	0.08	2	22.5	2	25;20	y	0.09	1	10.0	1	12;8	n	0.00	0	16.0	0	13;19	n	0.00	0	9.5	0	13;6	n	0.08	2	23.0	2	26;20	y	ENSMUSG00000022195.8	6030458C11Rik	chr15	protein_coding	RIKEN cDNA 6030458C11 gene
known_NIR_6078	chr15	12825024	12826151	+	12825028	12826151	A5SS	ENSMUST00000169061.8	known	1.00	3	0	3	0	n	1.00	5	0	5	0	n	1.00	16	0	16	0	n	1.00	6	0	6	0	n	1.00	14	0	14	0	n	1.00	14	0	14	0	n	1.00	15	0	15	0	n	1.00	11	0	11	0	n	1.00	6	0	6	0	n	1.00	3	0	3	0	n	0.87	13	2	13	2	y	1.00	14	0	14	0	n	ENSMUSG00000022191.17	Drosha	chr15	protein_coding	drosha, ribonuclease type III
known_NIR_6079	chr15	12827378	12830389	+	12827378	12833915	A3SS	ENSMUST00000169061.8	known	0.00	0	5	0	5	n	0.33	2	4	2	4	n	0.18	3	14	3	14	y	0.11	2	16	2	16	y	0.11	2	16	2	16	y	0.00	0	3	0	3	n	0.07	1	13	1	13	n	0.20	2	8	2	8	y	0.00	0	1	0	1	n	0.00	0	15	0	15	n	0.14	1	6	1	6	n	0.25	2	6	2	6	n	ENSMUSG00000022191.17	Drosha	chr15	protein_coding	drosha, ribonuclease type III
known_NIR_6080	chr15	25774394	25776107	+	25744342	25776107	A5SS	ENSMUST00000110457.8	known	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.17	2	10	2	10	y	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.14	1	6	1	6	n	0.00	0	9	0	9	n	ENSMUSG00000022272.18	Myo10	chr15	protein_coding	myosin X
known_NIR_6081	chr15	25941036	25941212	+	25941036	25941151	A3SS	ENSMUST00000226750.2	known	-	-	-	-	-	-	-	-	-	-	-	-	0.53	8	7	8	7	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.50	1	1	1	1	n	0.80	4	1	4	1	n	0.00	0	3	0	3	n	0.40	2	3	2	3	n	-	-	-	-	-	-	0.43	3	4	3	4	n	ENSMUSG00000022270.17	Retreg1	chr15	protein_coding	reticulophagy regulator 1
known_NIR_6082	chr15	25941036	25964310	+	25933712	25964310	A5SS	ENSMUST00000228327.2	known	0.46	18	21	18	21	y	0.25	4	12	4	12	y	0.64	37	21	37	21	y	0.13	4	26	4	26	y	0.27	17	45	17	45	y	0.58	34	25	34	25	y	0.33	15	30	15	30	y	0.49	19	20	19	20	y	0.15	5	29	5	29	y	0.19	8	35	8	35	y	0.12	3	22	3	22	y	0.24	15	47	15	47	y	ENSMUSG00000022270.17	Retreg1	chr15	protein_coding	reticulophagy regulator 1
known_NIR_6083	chr15	25941036	25964310	+	25941036;25941329	25941151;25964310	ES	ENSMUST00000226750.2	known	0.62	18	11.0	18	0;22	n	0.30	4	9.5	4	0;19	n	0.40	37	55.5	37	7;104	y	0.19	4	17.0	4	1;33	n	0.41	17	24.5	17	3;46	y	0.41	34	49.0	34	6;92	y	0.21	15	56.0	15	1;111	n	0.45	19	23.0	19	1;45	n	0.48	5	5.5	5	3;8	y	0.36	8	14.0	8	3;25	y	0.43	3	4.0	3	0;8	n	0.45	15	18.5	15	4;33	y	ENSMUSG00000022270.17	Retreg1	chr15	protein_coding	reticulophagy regulator 1
known_NIR_6084	chr15	25941036	25964310	+	25941329	25964310	A5SS	ENSMUST00000227275.2	known	0.45	18	22	18	22	y	0.17	4	19	4	19	y	0.26	37	104	37	104	y	0.11	4	33	4	33	y	0.27	17	46	17	46	y	0.27	34	92	34	92	y	0.12	15	111	15	111	y	0.30	19	45	19	45	y	0.38	5	8	5	8	y	0.24	8	25	8	25	y	0.27	3	8	3	8	y	0.31	15	33	15	33	y	ENSMUSG00000022270.17	Retreg1	chr15	protein_coding	reticulophagy regulator 1
known_NIR_6085	chr15	25941036;25941329	25941212;25964310	+	25941036	25964310	cassetteExon	ENSMUST00000226438.2	known	0.38	11.0	18	0;22	18	n	0.70	9.5	4	0;19	4	n	0.60	56.0	37	8;104	37	y	0.80	16.5	4	0;33	4	n	0.57	23.0	17	0;46	17	n	0.57	46.0	34	0;92	34	n	0.79	56.0	15	1;111	15	n	0.56	24.5	19	4;45	19	y	0.44	4.0	5	0;8	5	n	0.63	13.5	8	2;25	8	y	0.57	4.0	3	0;8	3	n	0.55	18.0	15	3;33	15	y	ENSMUSG00000022270.17	Retreg1	chr15	protein_coding	reticulophagy regulator 1
known_NIR_6086	chr15	25941329	25964310	+	25933712	25964310	A5SS	ENSMUST00000228327.2	known	0.51	22	21	22	21	y	0.61	19	12	19	12	y	0.83	104	21	104	21	y	0.56	33	26	33	26	y	0.51	46	45	46	45	y	0.79	92	25	92	25	y	0.79	111	30	111	30	y	0.69	45	20	45	20	y	0.22	8	29	8	29	y	0.42	25	35	25	35	y	0.27	8	22	8	22	y	0.41	33	47	33	47	y	ENSMUSG00000022270.17	Retreg1	chr15	protein_coding	reticulophagy regulator 1
known_NIR_6087	chr15	25942867	25964310	+	25933712	25964310	A5SS	ENSMUST00000228327.2	known	0.00	0	21	0	21	n	0.00	0	12	0	12	n	0.00	0	21	0	21	n	0.00	0	26	0	26	n	0.00	0	45	0	45	n	0.00	0	25	0	25	n	0.03	1	30	1	30	n	0.09	2	20	2	20	y	0.00	0	29	0	29	n	0.00	0	35	0	35	n	0.00	0	22	0	22	n	0.02	1	47	1	47	n	ENSMUSG00000022270.17	Retreg1	chr15	protein_coding	reticulophagy regulator 1
known_NIR_6088	chr15	25942867	25964310	+	25941036	25964310	A5SS	ENSMUST00000226438.2	known	0.00	0	18	0	18	n	0.00	0	4	0	4	n	0.00	0	37	0	37	n	0.00	0	4	0	4	n	0.00	0	17	0	17	n	0.00	0	34	0	34	n	0.06	1	15	1	15	n	0.10	2	19	2	19	y	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.06	1	15	1	15	n	ENSMUSG00000022270.17	Retreg1	chr15	protein_coding	reticulophagy regulator 1
known_NIR_6089	chr15	25942867	25964310	+	25941329	25964310	A5SS	ENSMUST00000227275.2	known	0.00	0	22	0	22	n	0.00	0	19	0	19	n	0.00	0	104	0	104	n	0.00	0	33	0	33	n	0.00	0	46	0	46	n	0.00	0	92	0	92	n	0.01	1	111	1	111	n	0.04	2	45	2	45	y	0.00	0	8	0	8	n	0.00	0	25	0	25	n	0.00	0	8	0	8	n	0.03	1	33	1	33	n	ENSMUSG00000022270.17	Retreg1	chr15	protein_coding	reticulophagy regulator 1
known_NIR_6090	chr15	25987132	25987316	+	25987132	25987247	A3SS	ENSMUST00000061875.8	known	0.00	0	62	0	62	n	0.00	0	57	0	57	n	0.00	0	88	0	88	n	0.00	0	44	0	44	n	0.00	0	65	0	65	n	0.00	0	42	0	42	n	0.00	0	65	0	65	n	0.00	0	37	0	37	n	0.00	0	50	0	50	n	0.00	0	81	0	81	n	0.00	0	73	0	73	n	0.03	2	76	2	76	y	ENSMUSG00000052253.7	Zfp622	chr15	protein_coding	zinc finger protein 622
known_NIR_6091	chr15	27619709	27630544	-	27619709;27623444	27623368;27630544	ES	ENSMUST00000059662.8	known	0.07	4	51.5	4	75;28	y	0.00	0	71.5	0	110;33	n	0.08	8	95.5	8	136;55	y	0.05	5	102.5	5	115;90	y	0.04	6	154.0	6	199;109	y	0.03	2	65.0	2	71;59	y	0.04	4	92.0	4	139;45	y	0.05	3	62.5	3	97;28	y	0.05	4	78.0	4	103;53	y	0.03	4	114.5	4	161;68	y	0.10	8	70.0	8	94;46	y	0.03	4	117.0	4	157;77	y	ENSMUSG00000046034.9	Otulin	chr15	protein_coding	OTU deubiquitinase with linear linkage specificity
known_NIR_6092	chr15	27741365	27742458	-	27741365	27742390	5pMXE	ENSMUST00000227999.2	known	0.75	6	2	6	2	n	0.64	7	4	7	4	y	0.50	7	7	7	7	y	0.75	3	1	3	1	n	0.50	5	5	5	5	y	0.80	8	2	8	2	y	0.33	5	10	5	10	y	0.44	4	5	4	5	n	0.42	5	7	5	7	y	0.46	6	7	6	7	y	0.57	8	6	8	6	y	0.40	6	9	6	9	y	ENSMUSG00000022263.11	Trio	chr15	protein_coding	triple functional domain (PTPRF interacting)
known_NIR_6093	chr15	27741365	27742470	-	27741365	27742458	A5SS	ENSMUST00000090247.7	known	0.45	5	6	5	6	y	0.36	4	7	4	7	y	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.29	2	5	2	5	n	0.20	2	8	2	8	y	0.00	0	5	0	5	n	0.33	2	4	2	4	n	0.17	1	5	1	5	n	0.25	2	6	2	6	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	ENSMUSG00000022263.11	Trio	chr15	protein_coding	triple functional domain (PTPRF interacting)
known_NIR_6094	chr15	31224729	31272535	+	31224729;31236015	31235919;31272535	ES	ENSMUST00000044524.16	known	0.00	0	1009.5	0	1107;912	n	0.00	0	1044.0	0	1121;967	n	0.00	0	1578.0	0	1708;1448	n	0.00	0	1136.5	0	1229;1044	n	0.00	1	1310.5	1	1325;1296	n	0.00	0	931.5	0	947;916	n	0.00	4	1138.5	4	1219;1058	y	0.00	0	764.0	0	810;718	n	0.00	0	752.5	0	812;693	n	0.00	0	1192.5	0	1239;1146	n	0.00	0	787.0	0	791;783	n	0.00	0	1088.5	0	1155;1022	n	ENSMUSG00000039168.16	Dap	chr15	protein_coding	death-associated protein
known_NIR_6095	chr15	31224729	31272535	+	31236015	31272535	A5SS&ES	ENSMUST00000186547.7	known	0.00	0	912	0	912	n	0.00	0	967	0	967	n	0.00	0	1448	0	1448	n	0.00	0	1044	0	1044	n	0.00	1	1296	1	1296	n	0.00	0	916	0	916	n	0.00	4	1058	4	1058	y	0.00	0	718	0	718	n	0.00	0	693	0	693	n	0.00	0	1146	0	1146	n	0.00	0	783	0	783	n	0.00	0	1022	0	1022	n	ENSMUSG00000039168.16	Dap	chr15	protein_coding	death-associated protein
known_NIR_6096	chr15	31224835	31235919	+	31224729	31235919	A5SS	ENSMUST00000044524.16	known	0.00	0	1107	0	1107	n	0.00	3	1121	3	1121	y	0.00	4	1708	4	1708	y	0.00	4	1229	4	1229	y	0.00	4	1325	4	1325	y	0.00	0	947	0	947	n	0.01	7	1219	7	1219	y	0.00	2	810	2	810	y	0.00	3	812	3	812	y	0.00	2	1239	2	1239	y	0.00	2	791	2	791	y	0.00	1	1155	1	1155	n	ENSMUSG00000039168.16	Dap	chr15	protein_coding	death-associated protein
known_NIR_6097	chr15	31225450	31235919	+	31224729	31235919	A5SS	ENSMUST00000044524.16	known	0.03	29	1107	29	1107	y	0.03	31	1121	31	1121	y	0.01	22	1708	22	1708	y	0.03	38	1229	38	1229	y	0.02	30	1325	30	1325	y	0.02	15	947	15	947	y	0.02	28	1219	28	1219	y	0.01	12	810	12	810	y	0.02	19	812	19	812	y	0.03	44	1239	44	1239	y	0.03	28	791	28	791	y	0.02	28	1155	28	1155	y	ENSMUSG00000039168.16	Dap	chr15	protein_coding	death-associated protein
known_NIR_6098	chr15	31225450	31235919	+	31224835	31235919	A5SS	ENSMUST00000186547.7	known	1.00	29	0	29	0	n	0.91	31	3	31	3	y	0.85	22	4	22	4	y	0.90	38	4	38	4	y	0.88	30	4	30	4	y	1.00	15	0	15	0	n	0.80	28	7	28	7	y	0.86	12	2	12	2	y	0.86	19	3	19	3	y	0.96	44	2	44	2	y	0.93	28	2	28	2	y	0.97	28	1	28	1	n	ENSMUSG00000039168.16	Dap	chr15	protein_coding	death-associated protein
known_NIR_6099	chr15	31305278	31367185	-	31305278	31325232	A5SS&ES	ENSMUST00000110410.10	known	0.06	1	16	1	16	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.06	1	16	1	16	n	0.04	1	25	1	25	n	0.18	2	9	2	9	y	0.06	1	17	1	17	n	0.14	2	12	2	12	y	0.07	1	13	1	13	n	0.00	0	16	0	16	n	0.25	1	3	1	3	n	0.00	0	19	0	19	n	ENSMUSG00000022237.18	Ankrd33b	chr15	protein_coding	ankyrin repeat domain 33B
known_NIR_6100	chr15	31305278	31367185	-	31305278;31325361	31325232;31367185	ES	ENSMUST00000123325.9	known	0.07	1	12.5	1	16;9	n	0.00	0	14.5	0	13;16	n	0.00	0	11.5	0	10;13	n	0.06	1	17.0	1	16;18	n	0.05	1	19.0	1	25;13	n	0.21	2	7.5	2	9;6	y	0.04	1	21.5	1	17;26	n	0.15	2	11.0	2	12;10	y	0.09	1	10.0	1	13;7	n	0.00	0	18.0	0	16;20	n	0.13	1	6.5	1	3;10	n	0.00	0	19.5	0	19;20	n	ENSMUSG00000022237.18	Ankrd33b	chr15	protein_coding	ankyrin repeat domain 33B
known_NIR_6101	chr15	31325149	31325232	-	31305278	31325232	A3SS	ENSMUST00000123325.9	known	0.11	2	16	2	16	y	0.28	5	13	5	13	y	0.23	3	10	3	10	y	0.11	2	16	2	16	y	0.22	7	25	7	25	y	0.10	1	9	1	9	n	0.11	2	17	2	17	y	0.20	3	12	3	12	y	0.00	0	13	0	13	n	0.16	3	16	3	16	y	0.00	0	3	0	3	n	0.10	2	19	2	19	y	ENSMUSG00000022237.18	Ankrd33b	chr15	protein_coding	ankyrin repeat domain 33B
known_NIR_6102	chr15	31325202	31367185	-	31325361	31367185	A3SS&ES	ENSMUST00000123325.9	known	0.25	3	9	3	9	y	0.11	2	16	2	16	y	0.07	1	13	1	13	n	0.25	6	18	6	18	y	0.46	11	13	11	13	y	0.25	2	6	2	6	n	0.13	4	26	4	26	y	0.23	3	10	3	10	y	0.63	12	7	12	7	y	0.35	11	20	11	20	y	0.29	4	10	4	10	y	0.29	8	20	8	20	y	ENSMUSG00000022237.18	Ankrd33b	chr15	protein_coding	ankyrin repeat domain 33B
known_NIR_6103	chr15	31569085	31581986	+	31565647	31581986	A5SS	ENSMUST00000226951.2	known	0.99	165	1	165	1	n	1.00	149	0	149	0	n	1.00	81	0	81	0	n	1.00	259	0	259	0	n	1.00	275	0	275	0	n	1.00	66	0	66	0	n	0.99	287	2	287	2	y	1.00	90	0	90	0	n	0.99	180	1	180	1	n	1.00	281	1	281	1	n	1.00	221	0	221	0	n	1.00	195	0	195	0	n	ENSMUSG00000022235.16	Cmbl	chr15	protein_coding	carboxymethylenebutenolidase-like (Pseudomonas)
known_NIR_6104	chr15	31572399	31581986	+	31565647	31581986	A5SS	ENSMUST00000226951.2	known	0.98	46	1	46	1	n	1.00	57	0	57	0	n	1.00	37	0	37	0	n	1.00	61	0	61	0	n	1.00	78	0	78	0	n	1.00	37	0	37	0	n	0.98	103	2	103	2	y	1.00	39	0	39	0	n	0.98	48	1	48	1	n	0.99	84	1	84	1	n	1.00	66	0	66	0	n	1.00	35	0	35	0	n	ENSMUSG00000022235.16	Cmbl	chr15	protein_coding	carboxymethylenebutenolidase-like (Pseudomonas)
known_NIR_6105	chr15	31572399	31581986	+	31569085	31581986	A5SS	ENSMUST00000162532.8	known	0.22	46	165	46	165	y	0.28	57	149	57	149	y	0.31	37	81	37	81	y	0.19	61	259	61	259	y	0.22	78	275	78	275	y	0.36	37	66	37	66	y	0.26	103	287	103	287	y	0.30	39	90	39	90	y	0.21	48	180	48	180	y	0.23	84	281	84	281	y	0.23	66	221	66	221	y	0.15	35	195	35	195	y	ENSMUSG00000022235.16	Cmbl	chr15	protein_coding	carboxymethylenebutenolidase-like (Pseudomonas)
known_NIR_6106	chr15	31582183	31584111	+	31582219	31584111	A5SS	ENSMUST00000226951.2	known	0.03	15	481	15	481	y	0.04	17	437	17	437	y	0.04	9	208	9	208	y	0.04	24	575	24	575	y	0.05	31	641	31	641	y	0.05	9	179	9	179	y	0.04	37	824	37	824	y	0.04	8	218	8	218	y	0.04	20	436	20	436	y	0.05	43	757	43	757	y	0.05	27	510	27	510	y	0.05	24	444	24	444	y	ENSMUSG00000022235.16	Cmbl	chr15	protein_coding	carboxymethylenebutenolidase-like (Pseudomonas)
known_NIR_6107	chr15	31598206	31601448	-	31598206	31601747	A5SS	ENSMUST00000022842.16	known	0.02	6	261	6	261	y	0.01	2	176	2	176	y	0.04	12	297	12	297	y	0.01	3	322	3	322	y	0.02	7	329	7	329	y	0.07	10	135	10	135	y	0.02	5	305	5	305	y	0.03	5	168	5	168	y	0.00	0	223	0	223	n	0.02	8	346	8	346	y	0.03	9	268	9	268	y	0.01	5	353	5	353	y	ENSMUSG00000022234.16	Cct5	chr15	protein_coding	chaperonin containing Tcp1, subunit 5 (epsilon)
known_NIR_6108	chr15	31602295	31603595	+	31602295	31617017	A3SS	ENSMUST00000160146.2	known	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.57	4	3	4	3	n	1.00	4	0	4	0	n	0.80	8	2	8	2	y	0.25	1	3	1	3	n	1.00	6	0	6	0	n	0.00	0	4	0	4	n	0.67	4	2	4	2	n	1.00	5	0	5	0	n	1.00	4	0	4	0	n	1.00	2	0	2	0	n	ENSMUSG00000039065.12	Atpsckmt	chr15	protein_coding	ATP synthase C subunit lysine N-methyltransferase
known_NIR_6109	chr15	31602295	31606057	+	31602295	31617017	A3SS	ENSMUST00000160146.2	known	1.00	17	0	17	0	n	0.92	12	1	12	1	n	0.79	11	3	11	3	y	1.00	8	0	8	0	n	0.86	12	2	12	2	y	0.79	11	3	11	3	y	1.00	17	0	17	0	n	0.71	10	4	10	4	y	0.67	4	2	4	2	n	1.00	17	0	17	0	n	1.00	12	0	12	0	n	1.00	5	0	5	0	n	ENSMUSG00000039065.12	Atpsckmt	chr15	protein_coding	ATP synthase C subunit lysine N-methyltransferase
known_NIR_6110	chr15	31602295;31603720	31603595;31606057	+	31602295	31606057	cassetteExon	ENSMUST00000042702.7	known	0.26	6.0	17	1;11	17	n	0.17	2.5	12	0;5	12	n	0.42	8.0	11	4;12	11	y	0.38	5.0	8	4;6	8	y	0.48	11.0	12	8;14	12	y	0.29	4.5	11	1;8	11	n	0.48	15.5	17	6;25	17	y	0.17	2.0	10	0;4	10	n	0.71	10.0	4	4;16	4	y	0.41	12.0	17	5;19	17	y	0.27	4.5	12	4;5	12	y	0.47	4.5	5	2;7	5	y	ENSMUSG00000039065.12	Atpsckmt	chr15	protein_coding	ATP synthase C subunit lysine N-methyltransferase
known_NIR_6111	chr15	31609762	31617017	+	31602295	31617017	A5SS	ENSMUST00000160146.2	known	1.00	78	0	78	0	n	0.98	65	1	65	1	n	0.96	80	3	80	3	y	1.00	61	0	61	0	n	0.98	92	2	92	2	y	0.94	46	3	46	3	y	1.00	83	0	83	0	n	0.92	48	4	48	4	y	0.97	62	2	62	2	y	1.00	67	0	67	0	n	1.00	68	0	68	0	n	1.00	78	0	78	0	n	ENSMUSG00000039065.12	Atpsckmt	chr15	protein_coding	ATP synthase C subunit lysine N-methyltransferase
known_NIR_6112	chr15	3300434	3304143	+	3300307	3304143	A5SS	ENSMUST00000082424.12	known	0.12	2	14	2	14	y	0.53	9	8	9	8	y	0.25	2	6	2	6	n	0.40	10	15	10	15	y	0.50	10	10	10	10	y	0.25	2	6	2	6	n	0.33	8	16	8	16	y	0.30	3	7	3	7	y	0.48	10	11	10	11	y	0.36	13	23	13	23	y	0.32	6	13	6	13	y	0.43	15	20	15	20	y	ENSMUSG00000064373.14	Selenop	chr15	protein_coding	selenoprotein P
known_NIR_6113	chr15	3300534	3304143	+	3300307	3304143	A5SS	ENSMUST00000082424.12	known	1.00	6058	14	6058	14	y	1.00	4851	8	4851	8	y	1.00	3577	6	3577	6	y	1.00	8618	15	8618	15	y	1.00	9130	10	9130	10	y	1.00	2280	6	2280	6	y	1.00	6854	16	6854	16	y	1.00	3198	7	3198	7	y	1.00	5427	11	5427	11	y	1.00	9236	23	9236	23	y	1.00	6046	13	6046	13	y	1.00	8052	20	8052	20	y	ENSMUSG00000064373.14	Selenop	chr15	protein_coding	selenoprotein P
known_NIR_6114	chr15	3300534	3304143	+	3300434	3304143	A5SS	ENSMUST00000159158.9	known	1.00	6058	2	6058	2	y	1.00	4851	9	4851	9	y	1.00	3577	2	3577	2	y	1.00	8618	10	8618	10	y	1.00	9130	10	9130	10	y	1.00	2280	2	2280	2	y	1.00	6854	8	6854	8	y	1.00	3198	3	3198	3	y	1.00	5427	10	5427	10	y	1.00	9236	13	9236	13	y	1.00	6046	6	6046	6	y	1.00	8052	15	8052	15	y	ENSMUSG00000064373.14	Selenop	chr15	protein_coding	selenoprotein P
known_NIR_6115	chr15	3300534;3302287	3302237;3304143	+	3300534	3304143	cassetteExon	ENSMUST00000159216.10	known	0.00	9.0	6058	4;14	6058	y	0.00	9.0	4851	7;11	4851	y	0.00	16.5	3577	12;21	3577	y	0.00	14.5	8618	11;18	8618	y	0.00	34.0	9130	25;43	9130	y	0.00	8.0	2280	6;10	2280	y	0.00	17.5	6854	10;25	6854	y	0.00	11.0	3198	8;14	3198	y	0.00	14.0	5427	14;14	5427	y	0.00	23.0	9236	14;32	9236	y	0.00	10.5	6046	8;13	6046	y	0.00	28.0	8052	25;31	8052	y	ENSMUSG00000064373.14	Selenop	chr15	protein_coding	selenoprotein P
known_NIR_6116	chr15	3301649	3304143	+	3300307	3304143	A5SS	ENSMUST00000082424.12	known	0.65	26	14	26	14	y	0.76	25	8	25	8	y	0.81	26	6	26	6	y	0.64	27	15	27	15	y	0.79	37	10	37	10	y	0.65	11	6	11	6	y	0.62	26	16	26	16	y	0.65	13	7	13	7	y	0.59	16	11	16	11	y	0.50	23	23	23	23	y	0.64	23	13	23	13	y	0.57	26	20	26	20	y	ENSMUSG00000064373.14	Selenop	chr15	protein_coding	selenoprotein P
known_NIR_6117	chr15	3301649	3304143	+	3300434	3304143	A5SS	ENSMUST00000159158.9	known	0.93	26	2	26	2	y	0.74	25	9	25	9	y	0.93	26	2	26	2	y	0.73	27	10	27	10	y	0.79	37	10	37	10	y	0.85	11	2	11	2	y	0.76	26	8	26	8	y	0.81	13	3	13	3	y	0.62	16	10	16	10	y	0.64	23	13	23	13	y	0.79	23	6	23	6	y	0.63	26	15	26	15	y	ENSMUSG00000064373.14	Selenop	chr15	protein_coding	selenoprotein P
known_NIR_6118	chr15	3301649	3304143	+	3300534	3304143	A5SS	ENSMUST00000159216.10	known	0.00	26	6058	26	6058	y	0.01	25	4851	25	4851	y	0.01	26	3577	26	3577	y	0.00	27	8618	27	8618	y	0.00	37	9130	37	9130	y	0.00	11	2280	11	2280	y	0.00	26	6854	26	6854	y	0.00	13	3198	13	3198	y	0.00	16	5427	16	5427	y	0.00	23	9236	23	9236	y	0.00	23	6046	23	6046	y	0.00	26	8052	26	8052	y	ENSMUSG00000064373.14	Selenop	chr15	protein_coding	selenoprotein P
known_NIR_6119	chr15	3301649	3304143	+	3302287	3304143	A5SS&ES	ENSMUST00000160311.3	known	0.65	26	14	26	14	y	0.69	25	11	25	11	y	0.55	26	21	26	21	y	0.60	27	18	27	18	y	0.46	37	43	37	43	y	0.52	11	10	11	10	y	0.51	26	25	26	25	y	0.48	13	14	13	14	y	0.53	16	14	16	14	y	0.42	23	32	23	32	y	0.64	23	13	23	13	y	0.46	26	31	26	31	y	ENSMUSG00000064373.14	Selenop	chr15	protein_coding	selenoprotein P
known_NIR_6120	chr15	3302287	3304143	+	3300307	3304143	A5SS	ENSMUST00000082424.12	known	0.50	14	14	14	14	y	0.58	11	8	11	8	y	0.78	21	6	21	6	y	0.55	18	15	18	15	y	0.81	43	10	43	10	y	0.62	10	6	10	6	y	0.61	25	16	25	16	y	0.67	14	7	14	7	y	0.56	14	11	14	11	y	0.58	32	23	32	23	y	0.50	13	13	13	13	y	0.61	31	20	31	20	y	ENSMUSG00000064373.14	Selenop	chr15	protein_coding	selenoprotein P
known_NIR_6121	chr15	3302287	3304143	+	3300434	3304143	A5SS	ENSMUST00000159158.9	known	0.88	14	2	14	2	y	0.55	11	9	11	9	y	0.91	21	2	21	2	y	0.64	18	10	18	10	y	0.81	43	10	43	10	y	0.83	10	2	10	2	y	0.76	25	8	25	8	y	0.82	14	3	14	3	y	0.58	14	10	14	10	y	0.71	32	13	32	13	y	0.68	13	6	13	6	y	0.67	31	15	31	15	y	ENSMUSG00000064373.14	Selenop	chr15	protein_coding	selenoprotein P
known_NIR_6122	chr15	33083468	33212962	+	33083468	33090445	3pMXE	ENSMUST00000227018.2	known	0.96	94	4	94	4	y	1.00	83	0	83	0	n	0.94	67	4	67	4	y	0.99	135	1	135	1	n	0.98	129	2	129	2	y	0.96	47	2	47	2	y	0.96	92	4	92	4	y	0.97	83	3	83	3	y	1.00	97	0	97	0	n	0.99	147	1	147	1	n	0.97	94	3	94	3	y	0.97	154	4	154	4	y	ENSMUSG00000039007.11	Cpq	chr15	protein_coding	carboxypeptidase Q
known_NIR_6123	chr15	33083468	33212962	+	33090640	33212962	5pMXE	ENSMUST00000226896.2	known	0.98	94	2	94	2	y	0.98	83	2	83	2	y	0.96	67	3	67	3	y	0.99	135	1	135	1	n	0.98	129	3	129	3	y	0.96	47	2	47	2	y	0.96	92	4	92	4	y	0.99	83	1	83	1	n	0.97	97	3	97	3	y	0.96	147	6	147	6	y	0.98	94	2	94	2	y	0.97	154	5	154	5	y	ENSMUSG00000039007.11	Cpq	chr15	protein_coding	carboxypeptidase Q
known_NIR_6124	chr15	33083468;33090640	33090445;33212962	+	33083468	33212962	cassetteExon	ENSMUST00000042167.10	known	0.03	3.0	94	4;2	94	y	0.01	1.0	83	0;2	83	n	0.05	3.5	67	4;3	67	y	0.01	1.0	135	1;1	135	n	0.02	2.5	129	2;3	129	y	0.04	2.0	47	2;2	47	y	0.04	4.0	92	4;4	92	y	0.02	2.0	83	3;1	83	n	0.02	1.5	97	0;3	97	n	0.02	3.5	147	1;6	147	n	0.03	2.5	94	3;2	94	y	0.03	4.5	154	4;5	154	y	ENSMUSG00000039007.11	Cpq	chr15	protein_coding	carboxypeptidase Q
known_NIR_6125	chr15	33083468;33090640	33090445;33212962	+	33083468;33154394	33154305;33212962	MXE	ENSMUST00000228916.2	known	0.86	3.0	0.5	4;2	0;1	n	1.00	1.0	0.0	0;2	0;0	n	0.88	3.5	0.5	4;3	0;1	n	0.33	1.0	2.0	1;1	0;4	n	0.42	2.5	3.5	2;3	4;3	y	1.00	2.0	0.0	2;2	0;0	n	0.73	4.0	1.5	4;4	2;1	n	0.67	2.0	1.0	3;1	1;1	n	0.38	1.5	2.5	0;3	1;4	n	1.00	3.5	0.0	1;6	0;0	n	0.83	2.5	0.5	3;2	1;0	n	0.64	4.5	2.5	4;5	2;3	y	ENSMUSG00000039007.11	Cpq	chr15	protein_coding	carboxypeptidase Q
known_NIR_6126	chr15	33083468;33154394	33154305;33212962	+	33083468	33212962	cassetteExon	ENSMUST00000042167.10	known	0.01	0.5	94	0;1	94	n	0.00	0.0	83	0;0	83	n	0.01	0.5	67	0;1	67	n	0.01	2.0	135	0;4	135	n	0.03	3.5	129	4;3	129	y	0.00	0.0	47	0;0	47	n	0.02	1.5	92	2;1	92	n	0.01	1.0	83	1;1	83	n	0.03	2.5	97	1;4	97	n	0.00	0.0	147	0;0	147	n	0.01	0.5	94	1;0	94	n	0.02	2.5	154	2;3	154	y	ENSMUSG00000039007.11	Cpq	chr15	protein_coding	carboxypeptidase Q
known_NIR_6127	chr15	33213145	33250072	+	33213409	33250072	A5SS	ENSMUST00000042167.10	known	0.07	8	113	8	113	y	0.04	3	77	3	77	y	0.09	5	52	5	52	y	0.03	4	116	4	116	y	0.05	8	142	8	142	y	0.13	6	39	6	39	y	0.05	5	101	5	101	y	0.07	4	57	4	57	y	0.04	5	113	5	113	y	0.01	1	150	1	150	n	0.07	8	105	8	105	y	0.04	5	131	5	131	y	ENSMUSG00000039007.11	Cpq	chr15	protein_coding	carboxypeptidase Q
known_NIR_6128	chr15	3357168	3357456	-	3355470	3357456	A3SS	ENSMUST00000069451.11	known	0.70	597	257	597	257	y	0.81	665	154	665	154	y	0.70	249	107	249	107	y	0.62	586	352	586	352	y	0.62	494	305	494	305	y	0.65	148	79	148	79	y	0.68	658	304	658	304	y	0.60	204	134	204	134	y	0.72	676	264	676	264	y	0.68	947	436	947	436	y	0.75	805	269	805	269	y	0.66	700	354	700	354	y	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
known_NIR_6129	chr15	34099731	34118026	+	34099731	34114170	A3SS	ENSMUST00000163697.2	known	0.01	1	78	1	78	n	0.00	0	73	0	73	n	0.00	0	199	0	199	n	0.00	0	132	0	132	n	0.01	2	169	2	169	y	0.00	0	97	0	97	n	0.00	0	109	0	109	n	0.00	0	101	0	101	n	0.00	0	93	0	93	n	0.01	2	146	2	146	y	0.00	0	77	0	77	n	0.00	0	135	0	135	n	ENSMUSG00000022255.17	Mtdh	chr15	protein_coding	metadherin
known_NIR_6130	chr15	34114254	34116457	+	34114254	34114945	3pMXE	ENSMUST00000226331.2	known	0.00	0	107	0	107	n	0.00	0	60	0	60	n	0.01	2	220	2	220	y	0.00	0	157	0	157	n	0.00	0	179	0	179	n	0.00	0	96	0	96	n	0.00	0	156	0	156	n	0.00	0	96	0	96	n	0.00	0	86	0	86	n	0.00	0	130	0	130	n	0.00	0	91	0	91	n	0.01	1	147	1	147	n	ENSMUSG00000022255.17	Mtdh	chr15	protein_coding	metadherin
known_NIR_6131	chr15	34114254	34116457	+	34114254;34115121	34114945;34116457	ES	ENSMUST00000022865.17	known	0.00	0	79.5	0	107;52	n	0.00	0	59.0	0	60;58	n	0.01	2	187.5	2	220;155	y	0.00	0	135.5	0	157;114	n	0.00	0	156.0	0	179;133	n	0.00	0	76.5	0	96;57	n	0.00	0	138.5	0	156;121	n	0.00	0	87.0	0	96;78	n	0.00	0	73.5	0	86;61	n	0.00	0	115.5	0	130;101	n	0.00	0	82.0	0	91;73	n	0.01	1	131.0	1	147;115	n	ENSMUSG00000022255.17	Mtdh	chr15	protein_coding	metadherin
known_NIR_6132	chr15	34114254	34116457	+	34115121	34116457	5pMXE	ENSMUST00000169905.2	known	0.00	0	52	0	52	n	0.00	0	58	0	58	n	0.01	2	155	2	155	y	0.00	0	114	0	114	n	0.00	0	133	0	133	n	0.00	0	57	0	57	n	0.00	0	121	0	121	n	0.00	0	78	0	78	n	0.00	0	61	0	61	n	0.00	0	101	0	101	n	0.00	0	73	0	73	n	0.01	1	115	1	115	n	ENSMUSG00000022255.17	Mtdh	chr15	protein_coding	metadherin
known_NIR_6133	chr15	34115121	34118026	+	34115121;34116522	34116457;34118026	ES	ENSMUST00000022865.17	known	0.00	0	54.0	0	52;56	n	0.00	0	48.0	0	58;38	n	0.01	1	150.0	1	155;145	n	0.00	0	101.5	0	114;89	n	0.02	2	119.0	2	133;105	y	0.02	1	60.5	1	57;64	n	0.01	1	112.0	1	121;103	n	0.00	0	69.5	0	78;61	n	0.00	0	55.5	0	61;50	n	0.02	2	96.5	2	101;92	y	0.04	3	67.0	3	73;61	y	0.00	0	98.0	0	115;81	n	ENSMUSG00000022255.17	Mtdh	chr15	protein_coding	metadherin
known_NIR_6134	chr15	34116522	34118026	+	34099731	34118026	A5SS	ENSMUST00000168991.8	known	0.98	56	1	56	1	n	1.00	38	0	38	0	n	1.00	145	0	145	0	n	1.00	89	0	89	0	n	0.98	105	2	105	2	y	1.00	64	0	64	0	n	1.00	103	0	103	0	n	1.00	61	0	61	0	n	1.00	50	0	50	0	n	0.98	92	2	92	2	y	1.00	61	0	61	0	n	1.00	81	0	81	0	n	ENSMUSG00000022255.17	Mtdh	chr15	protein_coding	metadherin
known_NIR_6135	chr15	34118256	34121569	+	34118256	34131310	A3SS	ENSMUST00000163333.9	known	0.00	0	14	0	14	n	0.20	1	4	1	4	n	0.21	4	15	4	15	y	0.06	1	16	1	16	n	0.06	1	16	1	16	n	0.20	2	8	2	8	y	0.11	2	17	2	17	y	0.32	6	13	6	13	y	0.00	0	7	0	7	n	0.09	2	21	2	21	y	0.06	1	16	1	16	n	0.06	1	17	1	17	n	ENSMUSG00000022255.17	Mtdh	chr15	protein_coding	metadherin
known_NIR_6136	chr15	34118256	34131310	+	34118256	34123814	3pMXE	ENSMUST00000163697.2	known	0.18	14	62	14	62	y	0.09	4	42	4	42	y	0.09	15	146	15	146	y	0.14	16	95	16	95	y	0.11	16	131	16	131	y	0.10	8	69	8	69	y	0.14	17	103	17	103	y	0.15	13	71	13	71	y	0.13	7	48	7	48	y	0.18	21	96	21	96	y	0.19	16	69	16	69	y	0.16	17	88	17	88	y	ENSMUSG00000022255.17	Mtdh	chr15	protein_coding	metadherin
known_NIR_6137	chr15	34118256	34131310	+	34118256;34123912	34123814;34131310	ES	ENSMUST00000022865.17	known	0.19	14	61.5	14	62;61	y	0.10	4	37.0	4	42;32	y	0.10	15	135.5	15	146;125	y	0.16	16	81.0	16	95;67	y	0.12	16	122.0	16	131;113	y	0.10	8	71.0	8	69;73	y	0.14	17	103.5	17	103;104	y	0.16	13	67.0	13	71;63	y	0.11	7	55.5	7	48;63	y	0.20	21	83.5	21	96;71	y	0.19	16	69.0	16	69;69	y	0.17	17	81.0	17	88;74	y	ENSMUSG00000022255.17	Mtdh	chr15	protein_coding	metadherin
known_NIR_6138	chr15	34118256;34121658	34121569;34123814	+	34118256	34123814	cassetteExon	ENSMUST00000022865.17	known	0.00	0.0	62	0;0	62	n	0.01	0.5	42	1;0	42	n	0.03	5.0	146	4;6	146	y	0.01	1.0	95	1;1	95	n	0.05	6.5	131	1;12	131	n	0.01	1.0	69	2;0	69	n	0.02	2.5	103	2;3	103	y	0.07	5.0	71	6;4	71	y	0.00	0.0	48	0;0	48	n	0.04	3.5	96	2;5	96	y	0.01	1.0	69	1;1	69	n	0.02	2.0	88	1;3	88	n	ENSMUSG00000022255.17	Mtdh	chr15	protein_coding	metadherin
known_NIR_6139	chr15	34134544	34136820	+	34134544	34136833	A3SS	ENSMUST00000022865.17	known	0.00	0	118	0	118	n	0.00	0	87	0	87	n	0.00	0	227	0	227	n	0.02	2	127	2	127	y	0.01	2	181	2	181	y	0.01	1	110	1	110	n	0.00	0	159	0	159	n	0.00	0	100	0	100	n	0.01	1	106	1	106	n	0.01	1	158	1	158	n	0.00	0	105	0	105	n	0.00	0	184	0	184	n	ENSMUSG00000022255.17	Mtdh	chr15	protein_coding	metadherin
known_NIR_6140	chr15	34136973	34140838	+	34136973;34140043	34139887;34140838	ES	ENSMUST00000022865.17	known	0.19	20	85.0	20	69;101	y	0.25	25	73.5	25	65;82	y	0.15	37	202.0	37	202;202	y	0.14	17	101.5	17	104;99	y	0.22	41	148.5	41	134;163	y	0.11	10	80.5	10	81;80	y	0.17	27	130.0	27	113;147	y	0.19	15	64.5	15	48;81	y	0.15	14	80.0	14	86;74	y	0.20	29	119.5	29	120;119	y	0.13	17	109.5	17	108;111	y	0.18	26	117.0	26	115;119	y	ENSMUSG00000022255.17	Mtdh	chr15	protein_coding	metadherin
known_NIR_6141	chr15	3418195	3612482	-	3418195;3487490	3487412;3612482	ES	ENSMUST00000069451.11	known	0.01	3	516.5	3	596;437	y	0.00	1	401.0	1	457;345	n	0.00	0	285.0	0	336;234	n	0.00	1	700.5	1	840;561	n	0.01	4	548.5	4	656;441	y	0.00	0	203.0	0	256;150	n	0.01	4	634.0	4	753;515	y	0.00	1	241.0	1	285;197	n	0.01	3	587.5	3	708;467	y	0.01	7	1008.5	7	1197;820	y	0.00	2	616.0	2	739;493	y	0.00	2	733.0	2	892;574	y	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
known_NIR_6142	chr15	3418195;3475093	3475007;3487412	-	3418195	3487412	cassetteExon	ENSMUST00000069451.11	known	0.00	0.0	596	0;0	596	n	0.00	0.0	457	0;0	457	n	0.00	0.0	336	0;0	336	n	0.00	0.0	840	0;0	840	n	0.00	0.0	656	0;0	656	n	0.00	0.0	256	0;0	256	n	0.00	0.0	753	0;0	753	n	0.00	0.0	285	0;0	285	n	0.00	0.5	708	1;0	708	n	0.00	3.0	1197	2;4	1197	y	0.00	0.0	739	0;0	739	n	0.00	0.0	892	0;0	892	n	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
known_NIR_6143	chr15	34488825	34489778	-	34488825	34495199	A5SS	ENSMUST00000022946.6	known	0.01	17	2555	17	2555	y	0.00	10	2389	10	2389	y	0.00	3	701	3	701	y	0.00	11	2691	11	2691	y	0.01	20	2097	20	2097	y	0.00	1	419	1	419	n	0.01	19	2495	19	2495	y	0.01	6	749	6	749	y	0.00	13	2618	13	2618	y	0.00	20	4030	20	4030	y	0.00	12	3421	12	3421	y	0.01	35	3941	35	3941	y	ENSMUSG00000022323.12	Rida	chr15	protein_coding	reactive intermediate imine deaminase A homolog
known_NIR_6144	chr15	34514477	34515988	+	34512997	34515988	A5SS	ENSMUST00000079028.6	known	0.22	2	7	2	7	n	0.30	3	7	3	7	y	0.27	3	8	3	8	y	0.00	0	11	0	11	n	0.38	5	8	5	8	y	0.00	0	9	0	9	n	0.25	5	15	5	15	y	0.09	1	10	1	10	n	0.00	0	9	0	9	n	0.00	0	16	0	16	n	0.19	3	13	3	13	y	0.42	5	7	5	7	y	ENSMUSG00000022325.15	Pop1	chr15	protein_coding	processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)
known_NIR_6145	chr15	3487490	3500882	-	3487490	3612482	A5SS	ENSMUST00000069451.11	known	0.00	0	437	0	437	n	0.00	0	345	0	345	n	0.00	0	234	0	234	n	0.00	2	561	2	561	y	0.00	1	441	1	441	n	0.00	0	150	0	150	n	0.00	0	515	0	515	n	0.01	2	197	2	197	y	0.00	2	467	2	467	y	0.00	4	820	4	820	y	0.00	0	493	0	493	n	0.02	12	574	12	574	y	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
known_NIR_6146	chr15	3487490	3611271	-	3487490	3612482	A5SS	ENSMUST00000069451.11	known	0.00	0	437	0	437	n	0.00	0	345	0	345	n	0.00	0	234	0	234	n	0.00	0	561	0	561	n	0.00	2	441	2	441	y	0.00	0	150	0	150	n	0.00	0	515	0	515	n	0.00	0	197	0	197	n	0.00	0	467	0	467	n	0.00	3	820	3	820	y	0.00	0	493	0	493	n	0.00	0	574	0	574	n	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
known_NIR_6147	chr15	3487490	3611740	-	3487490	3500882	5pMXE	ENSMUST00000110697.9	known	1.00	48	0	48	0	n	1.00	30	0	30	0	n	1.00	20	0	20	0	n	0.97	61	2	61	2	y	0.98	57	1	57	1	n	1.00	16	0	16	0	n	1.00	50	0	50	0	n	0.89	16	2	16	2	y	0.95	41	2	41	2	y	0.93	54	4	54	4	y	1.00	36	0	36	0	n	0.80	48	12	48	12	y	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
known_NIR_6148	chr15	3487490	3611740	-	3487490	3611271	5pMXE	ENSMUST00000161561.8	known	1.00	48	0	48	0	n	1.00	30	0	30	0	n	1.00	20	0	20	0	n	1.00	61	0	61	0	n	0.97	57	2	57	2	y	1.00	16	0	16	0	n	1.00	50	0	50	0	n	1.00	16	0	16	0	n	1.00	41	0	41	0	n	0.95	54	3	54	3	y	1.00	36	0	36	0	n	1.00	48	0	48	0	n	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
known_NIR_6149	chr15	3487490	3611740	-	3487490	3612482	A5SS	ENSMUST00000069451.11	known	0.10	48	437	48	437	y	0.08	30	345	30	345	y	0.08	20	234	20	234	y	0.10	61	561	61	561	y	0.11	57	441	57	441	y	0.10	16	150	16	150	y	0.09	50	515	50	515	y	0.08	16	197	16	197	y	0.08	41	467	41	467	y	0.06	54	820	54	820	y	0.07	36	493	36	493	y	0.08	48	574	48	574	y	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
known_NIR_6150	chr15	3581167	3612482	-	3418195	3612482	A3SS	ENSMUST00000160343.8	known	0.67	6	3	6	3	n	0.75	3	1	3	1	n	-	-	-	-	-	-	0.89	8	1	8	1	n	0.33	2	4	2	4	n	-	-	-	-	-	-	0.50	4	4	4	4	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.30	3	7	3	7	y	0.00	0	2	0	2	n	0.60	3	2	3	2	n	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
known_NIR_6151	chr15	3581167	3612482	-	3487490	3612482	A3SS	ENSMUST00000069451.11	known	0.01	6	437	6	437	y	0.01	3	345	3	345	y	0.00	0	234	0	234	n	0.01	8	561	8	561	y	0.00	2	441	2	441	y	0.00	0	150	0	150	n	0.01	4	515	4	515	y	0.00	0	197	0	197	n	0.00	0	467	0	467	n	0.00	3	820	3	820	y	0.00	0	493	0	493	n	0.01	3	574	3	574	y	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
known_NIR_6152	chr15	35937184	35937301	-	35935559	35937301	A3SS	ENSMUST00000014457.15	known	0.00	1	2330	1	2330	n	0.00	3	2273	3	2273	y	0.00	5	2109	5	2109	y	0.00	0	2148	0	2148	n	0.00	7	2461	7	2461	y	0.00	0	1267	0	1267	n	0.00	3	3116	3	3116	y	0.00	1	1331	1	1331	n	0.00	2	2090	2	2090	y	0.00	3	3299	3	3299	y	0.00	3	2984	3	2984	y	0.00	1	2954	1	2954	n	ENSMUSG00000014313.16	Cox6c	chr15	protein_coding	cytochrome c oxidase subunit 6C
known_NIR_6153	chr15	35937430	35937907	-	35937430	35938271	A5SS	ENSMUST00000014457.15	known	0.00	0	1149	0	1149	n	0.00	0	1183	0	1183	n	0.00	2	1184	2	1184	y	0.00	0	1152	0	1152	n	0.00	2	1434	2	1434	y	0.00	1	639	1	639	n	0.00	2	1585	2	1585	y	0.00	0	757	0	757	n	0.00	4	1278	4	1278	y	0.00	0	1696	0	1696	n	0.00	1	1604	1	1604	n	0.00	4	1566	4	1566	y	ENSMUSG00000014313.16	Cox6c	chr15	protein_coding	cytochrome c oxidase subunit 6C
known_NIR_6154	chr15	36174359	36175133	+	36174227	36175133	A5SS	ENSMUST00000180159.8	known	0.25	27	80	27	80	y	0.21	27	104	27	104	y	0.22	25	89	25	89	y	0.29	31	76	31	76	y	0.22	29	102	29	102	y	0.18	11	49	11	49	y	0.17	26	127	26	127	y	0.21	12	44	12	44	y	0.21	20	75	20	75	y	0.23	36	124	36	124	y	0.18	24	106	24	106	y	0.21	22	83	22	83	y	ENSMUSG00000045996.13	Polr2k	chr15	protein_coding	polymerase (RNA) II (DNA directed) polypeptide K
known_NIR_6155	chr15	36242211	36244233	-	36242211	36247268	A5SS	ENSMUST00000228358.2	known	0.96	44	2	44	2	y	0.96	49	2	49	2	y	0.96	88	4	88	4	y	0.96	43	2	43	2	y	0.97	84	3	84	3	y	0.96	45	2	45	2	y	0.94	63	4	63	4	y	1.00	62	0	62	0	n	0.97	33	1	33	1	n	0.95	63	3	63	3	y	0.93	37	3	37	3	y	1.00	38	0	38	0	n	ENSMUSG00000022280.10	Rnf19a	chr15	protein_coding	ring finger protein 19A
known_NIR_6156	chr15	36245775	36247268	-	36242211	36247268	A3SS	ENSMUST00000228358.2	known	0.95	36	2	36	2	y	0.93	27	2	27	2	y	0.94	63	4	63	4	y	0.96	43	2	43	2	y	0.97	95	3	95	3	y	0.96	47	2	47	2	y	0.94	58	4	58	4	y	1.00	50	0	50	0	n	0.96	24	1	24	1	n	0.95	58	3	58	3	y	0.91	32	3	32	3	y	1.00	52	0	52	0	n	ENSMUSG00000022280.10	Rnf19a	chr15	protein_coding	ring finger protein 19A
known_NIR_6157	chr15	36496139	36496486	-	36496139	36496570	A5SS	ENSMUST00000228601.2	known	0.43	6	8	6	8	y	0.27	3	8	3	8	y	0.57	4	3	4	3	n	0.59	10	7	10	7	y	0.62	16	10	16	10	y	0.54	7	6	7	6	y	0.57	13	10	13	10	y	0.00	0	12	0	12	n	0.27	3	8	3	8	y	0.46	6	7	6	7	y	0.29	5	12	5	12	y	0.47	7	8	7	8	y	ENSMUSG00000048307.9	Ankrd46	chr15	protein_coding	ankyrin repeat domain 46
known_NIR_6158	chr15	36496139	36496486	-	36496139	36496873	A5SS	ENSMUST00000228630.2	known	0.22	6	21	6	21	y	0.18	3	14	3	14	y	0.11	4	32	4	32	y	0.23	10	33	10	33	y	0.30	16	38	16	38	y	0.25	7	21	7	21	y	0.27	13	36	13	36	y	0.00	0	28	0	28	n	0.10	3	26	3	26	y	0.15	6	33	6	33	y	0.16	5	27	5	27	y	0.21	7	26	7	26	y	ENSMUSG00000048307.9	Ankrd46	chr15	protein_coding	ankyrin repeat domain 46
known_NIR_6159	chr15	36496139	36496570	-	36496139	36496873	A5SS	ENSMUST00000228630.2	known	0.28	8	21	8	21	y	0.36	8	14	8	14	y	0.09	3	32	3	32	y	0.17	7	33	7	33	y	0.21	10	38	10	38	y	0.22	6	21	6	21	y	0.22	10	36	10	36	y	0.30	12	28	12	28	y	0.24	8	26	8	26	y	0.17	7	33	7	33	y	0.31	12	27	12	27	y	0.24	8	26	8	26	y	ENSMUSG00000048307.9	Ankrd46	chr15	protein_coding	ankyrin repeat domain 46
known_NIR_6160	chr15	36596343	36596763	-	36596343	36596807	A5SS	ENSMUST00000001809.15	known	0.02	11	712	11	712	y	0.01	8	692	8	692	y	0.00	2	931	2	931	y	0.01	5	582	5	582	y	0.00	4	837	4	837	y	0.00	1	480	1	480	n	0.01	6	834	6	834	y	0.01	6	468	6	468	y	0.02	9	582	9	582	y	0.01	7	746	7	746	y	0.01	8	699	8	699	y	0.01	5	809	5	809	y	ENSMUSG00000022283.16	Pabpc1	chr15	protein_coding	poly(A) binding protein, cytoplasmic 1
known_NIR_6161	chr15	36601653	36602549	-	36601653	36603090	A5SS	ENSMUST00000001809.15	known	0.00	0	430	0	430	n	0.00	0	374	0	374	n	0.00	0	759	0	759	n	0.00	0	543	0	543	n	0.00	0	704	0	704	n	0.00	0	421	0	421	n	0.00	0	587	0	587	n	0.00	0	419	0	419	n	0.00	0	403	0	403	n	0.00	2	623	2	623	y	0.00	0	423	0	423	n	0.00	0	711	0	711	n	ENSMUSG00000022283.16	Pabpc1	chr15	protein_coding	poly(A) binding protein, cytoplasmic 1
known_NIR_6162	chr15	36791232	36794389	-	36791232	36793723	5pMXE	ENSMUST00000110362.4	known	0.00	0	104	0	104	n	0.00	0	78	0	78	n	0.00	0	215	0	215	n	0.05	6	115	6	115	y	0.00	0	126	0	126	n	0.02	2	82	2	82	y	0.02	2	129	2	129	y	0.00	0	96	0	96	n	0.03	2	56	2	56	y	0.04	5	127	5	127	y	0.02	1	64	1	64	n	0.03	4	124	4	124	y	ENSMUSG00000022285.18	Ywhaz	chr15	protein_coding	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
known_NIR_6163	chr15	36791232	36794389	-	36791232;36793919	36793723;36794389	ES	ENSMUST00000022894.14	known	0.00	0	56.5	0	104;9	n	0.00	0	42.5	0	78;7	n	0.00	0	111.5	0	215;8	n	0.08	6	65.5	6	115;16	y	0.00	0	70.0	0	126;14	n	0.04	2	45.5	2	82;9	y	0.03	2	71.5	2	129;14	y	0.00	0	52.0	0	96;8	n	0.06	2	31.5	2	56;7	y	0.07	5	67.5	5	127;8	y	0.03	1	36.0	1	64;8	n	0.05	4	70.5	4	124;17	y	ENSMUSG00000022285.18	Ywhaz	chr15	protein_coding	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
known_NIR_6164	chr15	36791232	36794389	-	36793922	36794389	3pMXE	ENSMUST00000227067.2	known	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.55	6	5	6	5	y	0.00	0	10	0	10	n	0.25	2	6	2	6	n	0.17	2	10	2	10	y	0.00	0	9	0	9	n	0.33	2	4	2	4	n	0.62	5	3	5	3	n	0.50	1	1	1	1	n	0.67	4	2	4	2	n	ENSMUSG00000022285.18	Ywhaz	chr15	protein_coding	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
known_NIR_6165	chr15	36791232;36793922	36793723;36794389	-	36791232	36794389	cassetteExon	ENSMUST00000110361.8	known	1.00	56.5	0	104;9	0	n	1.00	41.5	0	78;5	0	n	1.00	113.5	0	215;12	0	n	0.91	60.0	6	115;5	6	y	1.00	68.0	0	126;10	0	n	0.96	44.0	2	82;6	2	y	0.97	69.5	2	129;10	2	y	1.00	52.5	0	96;9	0	n	0.94	30.0	2	56;4	2	y	0.93	65.0	5	127;3	5	y	0.97	32.5	1	64;1	1	n	0.94	63.0	4	124;2	4	y	ENSMUSG00000022285.18	Ywhaz	chr15	protein_coding	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
known_NIR_6166	chr15	36793922	36794389	-	36793919	36794389	A3SS	ENSMUST00000022894.14	known	0.50	9	9	9	9	y	0.42	5	7	5	7	y	0.60	12	8	12	8	y	0.24	5	16	5	16	y	0.42	10	14	10	14	y	0.40	6	9	6	9	y	0.42	10	14	10	14	y	0.53	9	8	9	8	y	0.36	4	7	4	7	y	0.27	3	8	3	8	y	0.11	1	8	1	8	n	0.11	2	17	2	17	y	ENSMUSG00000022285.18	Ywhaz	chr15	protein_coding	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
known_NIR_6167	chr15	37004066	37007113	-	37004066	37007372	A5SS	ENSMUST00000078976.9	known	0.02	5	319	5	319	y	0.00	0	246	0	246	n	0.01	3	224	3	224	y	0.00	0	350	0	350	n	0.01	4	356	4	356	y	0.00	0	129	0	129	n	0.01	4	331	4	331	y	0.02	3	145	3	145	y	0.00	1	233	1	233	n	0.01	2	355	2	355	y	0.00	0	316	0	316	n	0.01	2	355	2	355	y	ENSMUSG00000062397.9	Zfp706	chr15	protein_coding	zinc finger protein 706
known_NIR_6168	chr15	37944836	37946979	-	37944836;37945416	37945283;37946979	ES	ENSMUST00000022901.16	known	0.00	0	3.5	0	3;4	n	0.57	4	3.0	4	3;3	y	0.50	3	3.0	3	3;3	n	0.00	0	6.5	0	6;7	n	0.30	3	7.0	3	9;5	y	0.00	0	1.5	0	2;1	n	0.00	0	6.0	0	5;7	n	0.00	0	4.0	0	5;3	n	0.20	1	4.0	1	3;5	n	0.17	1	5.0	1	3;7	n	0.00	0	2.5	0	4;1	n	0.00	0	3.5	0	2;5	n	ENSMUSG00000022292.17	Rrm2b	chr15	protein_coding	ribonucleotide reductase M2 B (TP53 inducible)
known_NIR_6169	chr15	37973702	37976304	-	37973702;37975915	37975831;37976304	ES	ENSMUST00000228368.2	known	0.02	3	169.5	3	196;143	y	0.03	5	148.5	5	169;128	y	0.01	2	216.5	2	244;189	y	0.02	3	169.5	3	189;150	y	0.01	3	220.5	3	246;195	y	0.03	3	98.5	3	103;94	y	0.01	3	230.5	3	238;223	y	0.03	4	110.5	4	133;88	y	0.03	5	145.5	5	165;126	y	0.02	5	215.0	5	242;188	y	0.01	2	173.0	2	190;156	y	0.01	2	197.0	2	214;180	y	ENSMUSG00000037487.8	Ubr5	chr15	protein_coding	ubiquitin protein ligase E3 component n-recognin 5
known_NIR_6170	chr15	37973702	37976304	-	37975915	37976304	A3SS	ENSMUST00000226369.2	known	0.02	3	143	3	143	y	0.04	5	128	5	128	y	0.01	2	189	2	189	y	0.02	3	150	3	150	y	0.02	3	195	3	195	y	0.03	3	94	3	94	y	0.01	3	223	3	223	y	0.04	4	88	4	88	y	0.04	5	126	5	126	y	0.03	5	188	5	188	y	0.01	2	156	2	156	y	0.01	2	180	2	180	y	ENSMUSG00000037487.8	Ubr5	chr15	protein_coding	ubiquitin protein ligase E3 component n-recognin 5
known_NIR_6171	chr15	38010021	38011976	-	38010021	38013686	A5SS	ENSMUST00000110336.4	known	0.14	4	24	4	24	y	0.00	0	14	0	14	n	0.04	2	55	2	55	y	0.03	1	31	1	31	n	0.02	1	50	1	50	n	0.06	2	30	2	30	y	0.00	0	34	0	34	n	0.00	0	32	0	32	n	0.04	1	26	1	26	n	0.05	4	75	4	75	y	0.00	0	25	0	25	n	0.04	2	49	2	49	y	ENSMUSG00000037487.8	Ubr5	chr15	protein_coding	ubiquitin protein ligase E3 component n-recognin 5
known_NIR_6172	chr15	38038271	38040997	-	38038253	38040997	A3SS	ENSMUST00000110336.4	known	0.44	8	10	8	10	y	0.62	5	3	5	3	n	0.47	26	29	26	29	y	0.40	17	25	17	25	y	0.46	16	19	16	19	y	0.50	13	13	13	13	y	0.21	6	22	6	22	y	0.52	15	14	15	14	y	0.33	4	8	4	8	y	0.42	16	22	16	22	y	0.50	7	7	7	7	y	0.38	14	23	14	23	y	ENSMUSG00000037487.8	Ubr5	chr15	protein_coding	ubiquitin protein ligase E3 component n-recognin 5
known_NIR_6173	chr15	38298096	38299941	-	38298096	38300803	A5SS	ENSMUST00000227920.2	known	-	-	-	-	-	-	0.00	0	8	0	8	n	0.10	3	28	3	28	y	0.25	4	12	4	12	y	0.20	1	4	1	4	n	0.36	4	7	4	7	y	0.06	1	16	1	16	n	0.29	6	15	6	15	y	0.00	0	5	0	5	n	0.14	3	18	3	18	y	0.17	3	15	3	15	y	0.14	1	6	1	6	n	ENSMUSG00000037465.11	Klf10	chr15	protein_coding	Kruppel-like factor 10
known_NIR_6174	chr15	38492600	38493718	-	38492603	38493718	A3SS	ENSMUST00000065308.13	known	0.20	21	83	21	83	y	0.19	17	71	17	71	y	0.18	20	93	20	93	y	0.11	18	139	18	139	y	0.12	22	155	22	155	y	0.14	11	69	11	69	y	0.16	23	120	23	120	y	0.13	9	62	9	62	y	0.16	19	103	19	103	y	0.16	30	153	30	153	y	0.16	21	109	21	109	y	0.15	27	156	27	156	y	ENSMUSG00000037458.16	Azin1	chr15	protein_coding	antizyme inhibitor 1
known_NIR_6175	chr15	38497794	38498913	-	38497642	38498913	A3SS	ENSMUST00000065308.13	known	0.03	3	114	3	114	y	0.03	3	93	3	93	y	0.04	5	119	5	119	y	0.01	2	156	2	156	y	0.06	12	176	12	176	y	0.00	0	65	0	65	n	0.04	6	149	6	149	y	0.04	3	73	3	73	y	0.00	0	121	0	121	n	0.06	15	218	15	218	y	0.02	3	123	3	123	y	0.03	5	160	5	160	y	ENSMUSG00000037458.16	Azin1	chr15	protein_coding	antizyme inhibitor 1
known_NIR_6176	chr15	38501844;38507590	38507431;38514717	-	38501844	38514717	cassetteExon	ENSMUST00000065308.13	known	0.10	8.5	75	10;7	75	y	0.06	3.5	56	3;4	56	y	0.22	21.5	76	25;18	76	y	0.09	13.0	138	17;9	138	y	0.13	13.5	93	11;16	93	y	0.20	12.5	51	8;17	51	y	0.13	17.0	115	12;22	115	y	0.16	9.0	49	10;8	49	y	0.08	7.5	82	8;7	82	y	0.16	18.5	100	21;16	100	y	0.15	13.0	71	17;9	71	y	0.13	18.5	125	20;17	125	y	ENSMUSG00000037458.16	Azin1	chr15	protein_coding	antizyme inhibitor 1
known_NIR_6177	chr15	38514853	38518341	-	38514853	38519153	A5SS	ENSMUST00000065308.13	known	0.04	2	54	2	54	y	0.12	6	45	6	45	y	0.02	2	100	2	100	y	0.06	8	130	8	130	y	0.07	9	114	9	114	y	0.11	7	54	7	54	y	0.11	13	108	13	108	y	0.07	3	39	3	39	y	0.05	3	62	3	62	y	0.05	6	113	6	113	y	0.07	5	68	5	68	y	0.03	4	117	4	117	y	ENSMUSG00000037458.16	Azin1	chr15	protein_coding	antizyme inhibitor 1
known_NIR_6178	chr15	38662465	38673101	+	38662327	38673101	A5SS	ENSMUST00000022904.8	known	0.00	0	83	0	83	n	0.00	0	61	0	61	n	0.00	0	116	0	116	n	0.00	0	98	0	98	n	0.00	0	114	0	114	n	0.00	0	49	0	49	n	0.03	3	100	3	100	y	0.03	2	59	2	59	y	0.00	0	51	0	51	n	0.00	0	102	0	102	n	0.00	0	47	0	47	n	0.00	0	79	0	79	n	ENSMUSG00000022295.9	Atp6v1c1	chr15	protein_coding	ATPase, H+ transporting, lysosomal V1 subunit C1
known_NIR_6179	chr15	38673264	38676272	+	38673264;38674208	38674141;38676272	ES	ENSMUST00000022904.8	known	0.02	2	85.5	2	85;86	y	0.00	0	59.5	0	64;55	n	0.00	0	141.5	0	159;124	n	0.01	1	102.5	1	107;98	n	0.02	2	125.5	2	148;103	y	0.00	0	69.0	0	77;61	n	0.01	1	121.0	1	135;107	n	0.00	0	67.0	0	59;75	n	0.00	0	76.0	0	78;74	n	0.00	0	129.5	0	138;121	n	0.00	0	67.5	0	72;63	n	0.00	0	123.5	0	137;110	n	ENSMUSG00000022295.9	Atp6v1c1	chr15	protein_coding	ATPase, H+ transporting, lysosomal V1 subunit C1
known_NIR_6180	chr15	38676357	38679564	+	38676357;38677857	38677763;38679564	ES	ENSMUST00000022904.8	known	0.00	0	70.5	0	78;63	n	0.00	0	49.5	0	50;49	n	0.03	3	116.0	3	109;123	y	0.02	2	83.5	2	90;77	y	0.02	2	101.5	2	102;101	y	0.00	0	67.5	0	73;62	n	0.03	3	94.5	3	98;91	y	0.00	0	48.5	0	58;39	n	0.02	1	63.5	1	68;59	n	0.02	2	101.0	2	95;107	y	0.00	0	71.0	0	76;66	n	0.00	0	101.5	0	106;97	n	ENSMUSG00000022295.9	Atp6v1c1	chr15	protein_coding	ATPase, H+ transporting, lysosomal V1 subunit C1
known_NIR_6181	chr15	38961592	38963268	-	38961637	38963268	A3SS	ENSMUST00000022908.10	known	0.00	0	12	0	12	n	0.07	1	13	1	13	n	0.03	1	38	1	38	n	0.00	0	22	0	22	n	0.00	0	33	0	33	n	0.00	0	18	0	18	n	0.06	2	31	2	31	y	0.06	1	16	1	16	n	0.08	1	11	1	11	n	0.05	1	20	1	20	n	0.18	3	14	3	14	y	0.13	4	26	4	26	y	ENSMUSG00000022299.10	Slc25a32	chr15	protein_coding	solute carrier family 25, member 32
known_NIR_6182	chr15	39646367	39647965	-	39632654	39647965	A3SS	ENSMUST00000022915.11	known	0.14	12	71	12	71	y	0.10	9	82	9	82	y	0.00	0	1	0	1	n	0.21	13	50	13	50	y	0.19	15	62	15	62	y	0.20	2	8	2	8	y	0.07	8	102	8	102	y	0.19	5	21	5	21	y	0.22	14	49	14	49	y	0.15	17	94	17	94	y	0.20	20	80	20	80	y	0.16	13	69	13	69	y	ENSMUSG00000022304.14	Dpys	chr15	protein_coding	dihydropyrimidinase
known_NIR_6183	chr15	39646367	39647965	-	39646505	39647965	A3SS	ENSMUST00000110306.9	known	0.02	12	505	12	505	y	0.02	9	495	9	495	y	0.00	0	38	0	38	n	0.03	13	427	13	427	y	0.03	15	539	15	539	y	0.05	2	35	2	35	y	0.01	8	664	8	664	y	0.04	5	133	5	133	y	0.03	14	445	14	445	y	0.02	17	714	17	714	y	0.03	20	696	20	696	y	0.02	13	557	13	557	y	ENSMUSG00000022304.14	Dpys	chr15	protein_coding	dihydropyrimidinase
known_NIR_6184	chr15	39646505	39647965	-	39632654	39647965	A3SS	ENSMUST00000022915.11	known	0.88	505	71	505	71	y	0.86	495	82	495	82	y	0.97	38	1	38	1	n	0.90	427	50	427	50	y	0.90	539	62	539	62	y	0.81	35	8	35	8	y	0.87	664	102	664	102	y	0.86	133	21	133	21	y	0.90	445	49	445	49	y	0.88	714	94	714	94	y	0.90	696	80	696	80	y	0.89	557	69	557	69	y	ENSMUSG00000022304.14	Dpys	chr15	protein_coding	dihydropyrimidinase
known_NIR_6185	chr15	39720133	39720495	-	39710163	39720495	A3SS	ENSMUST00000022915.11	known	0.01	2	309	2	309	y	0.01	3	206	3	206	y	0.00	0	13	0	13	n	0.01	3	314	3	314	y	0.01	4	375	4	375	y	0.00	0	39	0	39	n	0.02	7	328	7	328	y	0.00	0	106	0	106	n	0.01	2	245	2	245	y	0.00	0	444	0	444	n	0.01	3	313	3	313	y	0.01	2	309	2	309	y	ENSMUSG00000022304.14	Dpys	chr15	protein_coding	dihydropyrimidinase
known_NIR_6186	chr15	39748537	39807000	-	39748537;39767991	39767935;39807000	ES	ENSMUST00000022916.13	known	0.00	0	2.0	0	1;3	n	0.00	0	0.5	0	1;0	n	0.09	1	10.5	1	10;11	n	0.00	0	3.5	0	5;2	n	1.00	2	0.0	2	0;0	n	0.00	0	3.0	0	3;3	n	0.36	2	3.5	2	3;4	n	0.00	0	6.0	0	6;6	n	0.29	2	5.0	2	5;5	y	0.00	0	5.5	0	4;7	n	0.40	1	1.5	1	2;1	n	0.00	0	3.0	0	2;4	n	ENSMUSG00000022305.14	Lrp12	chr15	protein_coding	low density lipoprotein-related protein 12
known_NIR_6187	chr15	4021346	4021438	-	4021346	4021840	A5SS	ENSMUST00000046633.10	known	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.03	1	28	1	28	n	0.03	1	38	1	38	n	0.02	1	50	1	50	n	0.00	0	14	0	14	n	0.06	2	34	2	34	y	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.00	0	34	0	34	n	0.00	0	21	0	21	n	0.00	0	28	0	28	n	ENSMUSG00000041935.11	AW549877	chr15	protein_coding	expressed sequence AW549877
known_NIR_6188	chr15	41653014	41660870	+	41652628	41660870	A5SS	ENSMUST00000170127.9	known	0.00	0	24	0	24	n	0.00	0	18	0	18	n	0.00	0	53	0	53	n	0.00	0	33	0	33	n	0.00	0	63	0	63	n	0.00	0	55	0	55	n	0.00	0	33	0	33	n	0.00	0	33	0	33	n	0.00	0	19	0	19	n	0.04	2	46	2	46	y	0.00	0	28	0	28	n	0.00	0	62	0	62	n	ENSMUSG00000022307.17	Oxr1	chr15	protein_coding	oxidation resistance 1
known_NIR_6189	chr15	41689448;41712146	41712066;41713855	+	41689448	41713855	cassetteExon	ENSMUST00000090096.11	known	0.09	5.0	49	5;5	49	y	0.04	2.0	45	2;2	45	y	0.05	4.0	74	4;4	74	y	0.07	5.0	65	3;7	65	y	0.03	2.5	80	3;2	80	y	0.06	3.0	47	2;4	47	y	0.11	8.5	72	8;9	72	y	0.06	3.5	53	2;5	53	y	0.13	6.5	42	6;7	42	y	0.04	4.0	93	5;3	93	y	0.01	0.5	44	1;0	44	n	0.03	2.5	73	2;3	73	y	ENSMUSG00000022307.17	Oxr1	chr15	protein_coding	oxidation resistance 1
known_NIR_6190	chr15	41694525	41713855	+	41689448	41713855	A5SS	ENSMUST00000090096.11	known	0.12	7	49	7	49	y	0.15	8	45	8	45	y	0.16	14	74	14	74	y	0.25	22	65	22	65	y	0.18	18	80	18	80	y	0.08	4	47	4	47	y	0.21	19	72	19	72	y	0.17	11	53	11	53	y	0.33	21	42	21	42	y	0.17	19	93	19	93	y	0.25	15	44	15	44	y	0.25	24	73	24	73	y	ENSMUSG00000022307.17	Oxr1	chr15	protein_coding	oxidation resistance 1
known_NIR_6191	chr15	41694525	41713855	+	41712146	41713855	A5SS&ES	ENSMUST00000110297.10	known	0.58	7	5	7	5	y	0.80	8	2	8	2	y	0.78	14	4	14	4	y	0.76	22	7	22	7	y	0.90	18	2	18	2	y	0.50	4	4	4	4	n	0.68	19	9	19	9	y	0.69	11	5	11	5	y	0.75	21	7	21	7	y	0.86	19	3	19	3	y	1.00	15	0	15	0	n	0.89	24	3	24	3	y	ENSMUSG00000022307.17	Oxr1	chr15	protein_coding	oxidation resistance 1
known_NIR_6192	chr15	41694525;41701675	41701648;41713855	+	41694525	41713855	cassetteExon	ENSMUST00000166917.3	known	0.00	0.0	7	0;0	7	n	0.00	0.0	8	0;0	8	n	0.22	4.0	14	5;3	14	y	0.12	3.0	22	2;4	22	y	0.12	2.5	18	3;2	18	y	0.27	1.5	4	2;1	4	n	0.12	2.5	19	1;4	19	n	0.15	2.0	11	2;2	11	y	0.05	1.0	21	1;1	21	n	0.12	2.5	19	2;3	19	y	0.06	1.0	15	1;1	15	n	0.09	2.5	24	2;3	24	y	ENSMUSG00000022307.17	Oxr1	chr15	protein_coding	oxidation resistance 1
known_NIR_6193	chr15	41694525;41712146	41712066;41713855	+	41694525	41713855	cassetteExon	ENSMUST00000166917.3	known	0.26	2.5	7	0;5	7	n	0.11	1.0	8	0;2	8	n	0.12	2.0	14	0;4	14	n	0.14	3.5	22	0;7	22	n	0.05	1.0	18	0;2	18	n	0.33	2.0	4	0;4	4	n	0.19	4.5	19	0;9	19	n	0.19	2.5	11	0;5	11	n	0.18	4.5	21	2;7	21	y	0.07	1.5	19	0;3	19	n	0.00	0.0	15	0;0	15	n	0.06	1.5	24	0;3	24	n	ENSMUSG00000022307.17	Oxr1	chr15	protein_coding	oxidation resistance 1
known_NIR_6194	chr15	41697017	41713855	+	41689448	41713855	A5SS	ENSMUST00000090096.11	known	0.00	0	49	0	49	n	0.08	4	45	4	45	y	0.03	2	74	2	74	y	0.06	4	65	4	65	y	0.01	1	80	1	80	n	0.02	1	47	1	47	n	0.00	0	72	0	72	n	0.04	2	53	2	53	y	0.00	0	42	0	42	n	0.02	2	93	2	93	y	0.00	0	44	0	44	n	0.00	0	73	0	73	n	ENSMUSG00000022307.17	Oxr1	chr15	protein_coding	oxidation resistance 1
known_NIR_6195	chr15	41697017	41713855	+	41694525	41713855	A5SS	ENSMUST00000166917.3	known	0.00	0	7	0	7	n	0.33	4	8	4	8	y	0.12	2	14	2	14	y	0.15	4	22	4	22	y	0.05	1	18	1	18	n	0.20	1	4	1	4	n	0.00	0	19	0	19	n	0.15	2	11	2	11	y	0.00	0	21	0	21	n	0.10	2	19	2	19	y	0.00	0	15	0	15	n	0.00	0	24	0	24	n	ENSMUSG00000022307.17	Oxr1	chr15	protein_coding	oxidation resistance 1
known_NIR_6196	chr15	41697017	41713855	+	41712146	41713855	A5SS&ES	ENSMUST00000110297.10	known	0.00	0	5	0	5	n	0.67	4	2	4	2	n	0.33	2	4	2	4	n	0.36	4	7	4	7	y	0.33	1	2	1	2	n	0.20	1	4	1	4	n	0.00	0	9	0	9	n	0.29	2	5	2	5	n	0.00	0	7	0	7	n	0.40	2	3	2	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000022307.17	Oxr1	chr15	protein_coding	oxidation resistance 1
known_NIR_6197	chr15	41701675	41713855	+	41689448	41713855	A5SS	ENSMUST00000090096.11	known	0.00	0	49	0	49	n	0.00	0	45	0	45	n	0.04	3	74	3	74	y	0.06	4	65	4	65	y	0.02	2	80	2	80	y	0.02	1	47	1	47	n	0.05	4	72	4	72	y	0.04	2	53	2	53	y	0.02	1	42	1	42	n	0.03	3	93	3	93	y	0.02	1	44	1	44	n	0.04	3	73	3	73	y	ENSMUSG00000022307.17	Oxr1	chr15	protein_coding	oxidation resistance 1
known_NIR_6198	chr15	41701675	41713855	+	41712146	41713855	A5SS&ES	ENSMUST00000110297.10	known	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.43	3	4	3	4	n	0.36	4	7	4	7	y	0.50	2	2	2	2	n	0.20	1	4	1	4	n	0.31	4	9	4	9	y	0.29	2	5	2	5	n	0.12	1	7	1	7	n	0.50	3	3	3	3	n	1.00	1	0	1	0	n	0.50	3	3	3	3	n	ENSMUSG00000022307.17	Oxr1	chr15	protein_coding	oxidation resistance 1
known_NIR_6199	chr15	4172354	4183210	+	4172354;4177148	4177047;4183210	ES	ENSMUST00000110690.9	known	0.00	0	9.5	0	11;8	n	0.00	0	8.5	0	7;10	n	0.00	0	4.0	0	4;4	n	0.00	0	5.0	0	3;7	n	0.00	0	9.5	0	5;14	n	0.00	0	2.5	0	2;3	n	0.03	2	66.5	2	54;79	y	0.00	0	2.0	0	1;3	n	0.00	0	6.5	0	7;6	n	0.00	0	3.5	0	3;4	n	0.00	0	7.5	0	8;7	n	0.00	0	7.0	0	7;7	n	ENSMUSG00000022186.15	Oxct1	chr15	protein_coding	3-oxoacid CoA transferase 1
known_NIR_6200	chr15	43141818;43144624	43144415;43145999	-	43141818	43145999	cassetteExon	ENSMUST00000022960.4	known	0.02	3.0	152	0;6	152	n	0.01	1.5	115	0;3	115	n	0.01	1.5	135	2;1	135	n	0.02	3.5	186	2;5	186	y	0.01	1.5	153	1;2	153	n	0.00	0.0	51	0;0	51	n	0.01	2.0	179	2;2	179	y	0.00	0.0	103	0;0	103	n	0.02	3.0	139	2;4	139	y	0.01	2.5	192	0;5	192	n	0.02	3.0	122	4;2	122	y	0.01	2.0	154	1;3	154	n	ENSMUSG00000022336.4	Eif3e	chr15	protein_coding	eukaryotic translation initiation factor 3, subunit E
known_NIR_6201	chr15	44263620	44264678	-	44263623	44264678	A3SS	ENSMUST00000227843.2	known	0.77	17	5	17	5	y	0.44	4	5	4	5	n	0.58	37	27	37	27	y	0.56	15	12	15	12	y	0.62	21	13	21	13	y	0.58	15	11	15	11	y	0.58	18	13	18	13	y	0.56	20	16	20	16	y	0.65	15	8	15	8	y	0.58	14	10	14	10	y	0.68	13	6	13	6	y	0.71	17	7	17	7	y	ENSMUSG00000038736.11	Nudcd1	chr15	protein_coding	NudC domain containing 1
known_NIR_6202	chr15	44291566	44292956	+	44291638	44292956	A5SS	ENSMUST00000232353.2	known	0.36	118	211	118	211	y	0.33	104	211	104	211	y	0.40	153	225	153	225	y	0.30	93	213	93	213	y	0.34	136	262	136	262	y	0.33	68	135	68	135	y	0.36	141	246	141	246	y	0.34	64	127	64	127	y	0.26	67	195	67	195	y	0.35	131	245	131	245	y	0.33	108	220	108	220	y	0.34	130	252	130	252	y	ENSMUSG00000022338.9	Eny2	chr15	protein_coding	ENY2 transcription and export complex 2 subunit
known_NIR_6203	chr15	44293032;44294190	44294087;44295834	+	44293032	44295834	cassetteExon	ENSMUST00000232353.2	known	0.01	4.0	472	1;7	472	n	0.01	3.5	431	4;3	431	y	0.01	8.0	536	9;7	536	y	0.01	5.5	413	7;4	413	y	0.01	6.0	523	5;7	523	y	0.01	2.5	239	0;5	239	n	0.01	5.5	506	5;6	506	y	0.01	4.0	278	2;6	278	y	0.02	6.0	345	5;7	345	y	0.01	4.5	518	3;6	518	y	0.01	2.5	398	0;5	398	n	0.02	10.5	488	11;10	488	y	ENSMUSG00000022338.9	Eny2	chr15	protein_coding	ENY2 transcription and export complex 2 subunit
known_NIR_6204	chr15	44295904	44297295	+	44295904	44297250	A3SS	ENSMUST00000226355.2	known	0.97	394	13	394	13	y	0.98	374	8	374	8	y	0.99	446	4	446	4	y	0.97	310	9	310	9	y	0.99	442	4	442	4	y	0.99	225	2	225	2	y	0.98	451	7	451	7	y	1.00	250	1	250	1	n	0.98	311	7	311	7	y	0.97	417	11	417	11	y	0.99	376	5	376	5	y	0.95	415	20	415	20	y	ENSMUSG00000022338.9	Eny2	chr15	protein_coding	ENY2 transcription and export complex 2 subunit
known_NIR_6205	chr15	44295904	44297297	+	44295904	44297250	A3SS	ENSMUST00000226355.2	known	0.73	35	13	35	13	y	0.76	25	8	25	8	y	0.88	30	4	30	4	y	0.69	20	9	20	9	y	0.91	39	4	39	4	y	0.89	17	2	17	2	y	0.84	36	7	36	7	y	0.94	16	1	16	1	n	0.73	19	7	19	7	y	0.73	30	11	30	11	y	0.81	22	5	22	5	y	0.58	28	20	28	20	y	ENSMUSG00000022338.9	Eny2	chr15	protein_coding	ENY2 transcription and export complex 2 subunit
known_NIR_6206	chr15	44295904	44297297	+	44295904	44297295	A3SS	ENSMUST00000226827.2	known	0.08	35	394	35	394	y	0.06	25	374	25	374	y	0.06	30	446	30	446	y	0.06	20	310	20	310	y	0.08	39	442	39	442	y	0.07	17	225	17	225	y	0.07	36	451	36	451	y	0.06	16	250	16	250	y	0.06	19	311	19	311	y	0.07	30	417	30	417	y	0.06	22	376	22	376	y	0.06	28	415	28	415	y	ENSMUSG00000022338.9	Eny2	chr15	protein_coding	ENY2 transcription and export complex 2 subunit
known_NIR_6207	chr15	44483303	44487839	+	44482765	44487839	A5SS	ENSMUST00000227691.2	known	0.67	8	4	8	4	y	0.80	4	1	4	1	n	0.87	20	3	20	3	y	0.65	15	8	15	8	y	0.73	16	6	16	6	y	1.00	10	0	10	0	n	0.67	16	8	16	8	y	0.73	8	3	8	3	y	0.85	11	2	11	2	y	0.76	22	7	22	7	y	1.00	10	0	10	0	n	0.65	13	7	13	7	y	ENSMUSG00000022339.10	Ebag9	chr15	protein_coding	estrogen receptor-binding fragment-associated gene 9
known_NIR_6208	chr15	44483338	44487839	+	44483303	44487839	A5SS	ENSMUST00000226165.2	known	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.09	2	20	2	20	y	0.00	0	15	0	15	n	0.00	0	16	0	16	n	0.17	2	10	2	10	y	0.00	0	16	0	16	n	0.11	1	8	1	8	n	0.00	0	11	0	11	n	0.04	1	22	1	22	n	0.00	0	10	0	10	n	0.07	1	13	1	13	n	ENSMUSG00000022339.10	Ebag9	chr15	protein_coding	estrogen receptor-binding fragment-associated gene 9
known_NIR_6209	chr15	4756799	4761107	+	4756799	4761122	A3SS	ENSMUST00000162585.8	known	0.18	52	245	52	245	y	0.12	24	177	24	177	y	0.21	50	186	50	186	y	0.18	83	385	83	385	y	0.16	87	458	87	458	y	0.20	39	160	39	160	y	0.16	57	289	57	289	y	0.19	59	255	59	255	y	0.15	47	274	47	274	y	0.16	65	349	65	349	y	0.14	29	182	29	182	y	0.17	70	332	70	332	y	ENSMUSG00000022181.17	C6	chr15	protein_coding	complement component 6
known_NIR_6210	chr15	4827922	4835514	+	4827922	4833105	3pMXE	ENSMUST00000162585.8	known	0.00	1	644	1	644	n	0.01	5	671	5	671	y	0.01	2	357	2	357	y	0.02	12	554	12	554	y	0.02	15	820	15	820	y	0.02	6	256	6	256	y	0.01	5	778	5	778	y	0.01	4	354	4	354	y	0.01	7	599	7	599	y	0.02	18	734	18	734	y	0.02	14	558	14	558	y	0.01	9	685	9	685	y	ENSMUSG00000022181.17	C6	chr15	protein_coding	complement component 6
known_NIR_6211	chr15	5146408	5146769	+	5146166	5146769	A5SS	ENSMUST00000045356.9	known	0.00	2	851	2	851	y	0.00	4	937	4	937	y	0.00	3	1020	3	1020	y	0.00	0	776	0	776	n	0.00	0	1015	0	1015	n	0.00	0	617	0	617	n	0.00	4	1091	4	1091	y	0.01	3	525	3	525	y	0.00	2	796	2	796	y	0.00	0	1098	0	1098	n	0.00	0	973	0	973	n	0.00	0	950	0	950	n	ENSMUSG00000041841.9	Rpl37	chr15	protein_coding	ribosomal protein L37
known_NIR_6212	chr15	5146548	5146769	+	5146166	5146769	A5SS	ENSMUST00000045356.9	known	0.00	1	851	1	851	n	0.00	0	937	0	937	n	0.00	0	1020	0	1020	n	0.01	4	776	4	776	y	0.00	1	1015	1	1015	n	0.00	0	617	0	617	n	0.00	2	1091	2	1091	y	0.00	0	525	0	525	n	0.00	1	796	1	796	n	0.00	0	1098	0	1098	n	0.00	2	973	2	973	y	0.00	0	950	0	950	n	ENSMUSG00000041841.9	Rpl37	chr15	protein_coding	ribosomal protein L37
known_NIR_6213	chr15	51653509	51661009	-	51653509;51659933	51659784;51661009	ES	ENSMUST00000022925.10	known	0.02	7	458.5	7	469;448	y	0.01	7	480.0	7	510;450	y	0.04	21	473.0	21	450;496	y	0.01	5	486.0	5	477;495	y	0.01	4	608.0	4	579;637	y	0.03	10	284.5	10	276;293	y	0.01	8	588.5	8	571;606	y	0.00	1	308.5	1	299;318	n	0.02	7	405.0	7	415;395	y	0.00	2	575.0	2	570;580	y	0.01	5	491.5	5	511;472	y	0.01	4	580.5	4	551;610	y	ENSMUSG00000022312.12	Eif3h	chr15	protein_coding	eukaryotic translation initiation factor 3, subunit H
known_NIR_6214	chr15	5215249	5219063	+	5215053	5219063	A5SS	ENSMUST00000118193.8	known	1.00	7	0	7	0	n	0.67	4	2	4	2	n	1.00	23	0	23	0	n	1.00	14	0	14	0	n	0.85	23	4	23	4	y	0.94	15	1	15	1	n	0.80	16	4	16	4	y	0.85	17	3	17	3	y	0.84	16	3	16	3	y	1.00	17	0	17	0	n	0.75	12	4	12	4	y	1.00	20	0	20	0	n	ENSMUSG00000022151.17	Ttc33	chr15	protein_coding	tetratricopeptide repeat domain 33
known_NIR_6215	chr15	5215874	5219063	+	5215053	5219063	A5SS	ENSMUST00000118193.8	known	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	4	0	4	0	n	-	-	-	-	-	-	0.64	7	4	7	4	y	0.50	1	1	1	1	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	1.00	4	0	4	0	n	0.00	0	4	0	4	n	1.00	3	0	3	0	n	ENSMUSG00000022151.17	Ttc33	chr15	protein_coding	tetratricopeptide repeat domain 33
known_NIR_6216	chr15	5215874	5219063	+	5215249	5219063	A5SS	ENSMUST00000022751.15	known	0.00	0	7	0	7	n	0.20	1	4	1	4	n	0.15	4	23	4	23	y	0.00	0	14	0	14	n	0.23	7	23	7	23	y	0.06	1	15	1	15	n	0.06	1	16	1	16	n	0.00	0	17	0	17	n	0.06	1	16	1	16	n	0.19	4	17	4	17	y	0.00	0	12	0	12	n	0.13	3	20	3	20	y	ENSMUSG00000022151.17	Ttc33	chr15	protein_coding	tetratricopeptide repeat domain 33
known_NIR_6217	chr15	5216894	5219063	+	5215249	5219063	A5SS	ENSMUST00000022751.15	known	0.30	3	7	3	7	y	0.43	3	4	3	4	n	0.08	2	23	2	23	y	0.12	2	14	2	14	y	0.08	2	23	2	23	y	0.00	0	15	0	15	n	0.00	0	16	0	16	n	0.00	0	17	0	17	n	0.11	2	16	2	16	y	0.15	3	17	3	17	y	0.00	0	12	0	12	n	0.00	0	20	0	20	n	ENSMUSG00000022151.17	Ttc33	chr15	protein_coding	tetratricopeptide repeat domain 33
known_NIR_6218	chr15	5219284	5241480	+	5219284;5237931	5237850;5241480	ES	ENSMUST00000118193.8	known	0.03	1	32.0	1	25;39	n	0.03	1	33.0	1	35;31	n	0.02	1	62.5	1	61;64	n	0.03	2	56.5	2	61;52	y	0.06	4	60.5	4	57;64	y	0.05	2	35.0	2	36;34	y	0.09	6	60.5	6	50;71	y	0.00	0	39.5	0	36;43	n	0.03	1	31.0	1	28;34	n	0.00	0	55.5	0	49;62	n	0.08	3	36.0	3	36;36	y	0.06	3	51.0	3	47;55	y	ENSMUSG00000022151.17	Ttc33	chr15	protein_coding	tetratricopeptide repeat domain 33
known_NIR_6219	chr15	54713523;54714818	54714744;54723439	-	54713523	54723439	cassetteExon	ENSMUST00000041591.16	known	0.03	2.5	74	4;1	74	n	0.02	1.5	62	1;2	62	n	0.05	5.0	106	5;5	106	y	0.03	3.5	107	3;4	107	y	0.03	5.5	166	5;6	166	y	0.04	2.5	58	4;1	58	n	0.03	3.5	123	3;4	123	y	0.02	2.5	134	1;4	134	n	0.01	1.0	97	2;0	97	n	0.01	1.0	142	2;0	142	n	0.02	2.0	84	2;2	84	y	0.01	1.5	143	0;3	143	n	ENSMUSG00000022425.17	Enpp2	chr15	protein_coding	ectonucleotide pyrophosphatase/phosphodiesterase 2
known_NIR_6220	chr15	54723490	54725906	-	54723490	54725894	A5SS	ENSMUST00000041591.16	known	0.39	29	46	29	46	y	0.59	35	24	35	24	y	0.32	32	68	32	68	y	0.41	44	64	44	64	y	0.36	67	117	67	117	y	0.34	22	43	22	43	y	0.34	49	97	49	97	y	0.37	55	94	55	94	y	0.38	35	57	35	57	y	0.37	52	87	52	87	y	0.36	35	63	35	63	y	0.40	61	92	61	92	y	ENSMUSG00000022425.17	Enpp2	chr15	protein_coding	ectonucleotide pyrophosphatase/phosphodiesterase 2
known_NIR_6221	chr15	54783094	54815944	-	54783094	54783325	5pMXE	ENSMUST00000041591.16	known	0.88	22	3	22	3	y	0.91	10	1	10	1	n	0.65	28	15	28	15	y	0.91	41	4	41	4	y	0.92	65	6	65	6	y	0.90	26	3	26	3	y	0.84	38	7	38	7	y	0.87	74	11	74	11	y	1.00	20	0	20	0	n	0.83	39	8	39	8	y	0.92	22	2	22	2	y	0.90	44	5	44	5	y	ENSMUSG00000022425.17	Enpp2	chr15	protein_coding	ectonucleotide pyrophosphatase/phosphodiesterase 2
known_NIR_6222	chr15	54909384	54910799	-	54909384	54910814	A5SS	ENSMUST00000041733.9	known	0.00	0	13	0	13	n	0.00	0	2	0	2	n	0.07	2	25	2	25	y	0.07	1	14	1	14	n	0.07	2	25	2	25	y	0.14	2	12	2	12	y	0.06	1	17	1	17	n	0.24	4	13	4	13	y	0.11	2	16	2	16	y	0.15	4	23	4	23	y	0.00	0	7	0	7	n	0.00	0	15	0	15	n	ENSMUSG00000037343.9	Taf2	chr15	protein_coding	TATA-box binding protein associated factor 2
known_NIR_6223	chr15	54996956	55012737	+	54976015	55012737	A5SS	ENSMUST00000096433.10	known	0.00	0	23	0	23	n	0.00	0	9	0	9	n	0.05	2	39	2	39	y	0.00	0	42	0	42	n	0.05	4	73	4	73	y	0.12	2	15	2	15	y	0.00	0	41	0	41	n	0.06	2	30	2	30	y	0.02	1	48	1	48	n	0.00	0	59	0	59	n	0.05	2	35	2	35	y	0.06	4	67	4	67	y	ENSMUSG00000022419.17	Deptor	chr15	protein_coding	DEP domain containing MTOR-interacting protein
known_NIR_6224	chr15	55012915	55015236	+	55012915	55015184	A3SS	ENSMUST00000096433.10	known	0.00	0	35	0	35	n	0.00	0	11	0	11	n	0.00	0	68	0	68	n	0.00	0	99	0	99	n	0.01	1	97	1	97	n	0.00	0	28	0	28	n	0.00	0	50	0	50	n	0.00	0	54	0	54	n	0.02	1	64	1	64	n	0.00	0	118	0	118	n	0.00	0	50	0	50	n	0.02	2	81	2	81	y	ENSMUSG00000022419.17	Deptor	chr15	protein_coding	DEP domain containing MTOR-interacting protein
known_NIR_6225	chr15	55381733	55382533	+	55381733	55383329	A3SS	ENSMUST00000023053.12	known	0.23	5	17	5	17	y	0.47	14	16	14	16	y	0.38	6	10	6	10	y	0.36	9	16	9	16	y	0.31	11	25	11	25	y	0.53	10	9	10	9	y	0.43	13	17	13	17	y	0.36	5	9	5	9	y	0.18	3	14	3	14	y	0.50	12	12	12	12	y	0.38	12	20	12	20	y	0.50	14	14	14	14	y	ENSMUSG00000022371.17	Col14a1	chr15	protein_coding	collagen, type XIV, alpha 1
known_NIR_6226	chr15	55406780	55418716	-	55406780	55411538	5pMXE	ENSMUST00000165356.2	known	0.09	18	179	18	179	y	0.07	13	176	13	176	y	0.07	15	191	15	191	y	0.11	22	186	22	186	y	0.10	24	225	24	225	y	0.06	8	128	8	128	y	0.08	22	251	22	251	y	0.05	5	99	5	99	y	0.09	16	154	16	154	y	0.13	36	233	36	233	y	0.07	16	212	16	212	y	0.11	28	236	28	236	y	ENSMUSG00000022370.14	Mrpl13	chr15	protein_coding	mitochondrial ribosomal protein L13
known_NIR_6227	chr15	55406780;55411631	55411538;55418716	-	55406780	55418716	cassetteExon	ENSMUST00000164542.8	known	0.91	183.5	18	179;188	18	y	0.94	194.5	13	176;213	13	y	0.93	205.5	15	191;220	15	y	0.90	196.0	22	186;206	22	y	0.91	242.5	24	225;260	24	y	0.94	128.0	8	128;128	8	y	0.92	262.5	22	251;274	22	y	0.96	115.5	5	99;132	5	y	0.92	175.0	16	154;196	16	y	0.87	246.5	36	233;260	36	y	0.93	225.5	16	212;239	16	y	0.89	238.5	28	236;241	28	y	ENSMUSG00000022370.14	Mrpl13	chr15	protein_coding	mitochondrial ribosomal protein L13
known_NIR_6228	chr15	57746942	57753738	-	57746942	57755539	A5SS	ENSMUST00000022993.7	known	0.01	3	311	3	311	y	0.00	1	271	1	271	n	0.00	3	613	3	613	y	0.00	2	448	2	448	y	0.01	5	559	5	559	y	0.00	2	405	2	405	y	0.01	3	480	3	480	y	0.01	5	453	5	453	y	0.00	0	335	0	335	n	0.00	1	454	1	454	n	0.00	1	335	1	335	n	0.00	1	429	1	429	n	ENSMUSG00000022365.7	Derl1	chr15	protein_coding	Der1-like domain family, member 1
known_NIR_6229	chr15	57779512	57786353	+	57779512	57783327	3pMXE	ENSMUST00000159775.8	known	0.50	2	2	2	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.20	2	8	2	8	y	0.67	2	1	2	1	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.29	2	5	2	5	n	0.40	2	3	2	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000022364.15	Tbc1d31	chr15	protein_coding	TBC1 domain family, member 31
known_NIR_6230	chr15	57779512	57786353	+	57779512;57783442	57783327;57786353	ES	ENSMUST00000022992.13	known	0.44	2	2.5	2	2;3	n	0.00	0	3.0	0	3;3	n	0.00	0	3.0	0	2;4	n	0.20	2	8.0	2	8;8	y	0.40	2	3.0	2	1;5	n	0.00	0	5.5	0	9;2	n	0.00	0	4.5	0	6;3	n	0.00	0	2.0	0	2;2	n	0.40	2	3.0	2	5;1	n	0.31	2	4.5	2	3;6	y	0.00	0	3.0	0	3;3	n	0.00	0	4.0	0	3;5	n	ENSMUSG00000022364.15	Tbc1d31	chr15	protein_coding	TBC1 domain family, member 31
known_NIR_6231	chr15	57824379;57825659	57825465;57827200	+	57824379	57827200	cassetteExon	ENSMUST00000022992.13	known	0.50	3.0	3	3;3	3	n	0.14	1.0	6	0;2	6	n	0.33	1.5	3	1;2	3	n	0.47	3.5	4	4;3	4	y	0.30	5.5	13	10;1	13	n	0.08	0.5	6	0;1	6	n	0.20	1.5	6	2;1	6	n	0.00	0.0	3	0;0	3	n	0.00	0.0	6	0;0	6	n	0.18	2.0	9	4;0	9	n	0.78	3.5	1	4;3	1	n	0.50	3.0	3	0;6	3	n	ENSMUSG00000022364.15	Tbc1d31	chr15	protein_coding	TBC1 domain family, member 31
known_NIR_6232	chr15	57894496	57897480	-	57894496	57895380	A5SS&ES	ENSMUST00000177176.8	known	0.00	0	47	0	47	n	0.00	0	68	0	68	n	0.00	0	127	0	127	n	0.03	2	64	2	64	y	0.00	0	64	0	64	n	0.00	0	60	0	60	n	0.01	1	70	1	70	n	0.00	0	50	0	50	n	0.00	0	35	0	35	n	0.00	0	60	0	60	n	0.02	1	48	1	48	n	0.00	0	66	0	66	n	ENSMUSG00000022362.14	Gm29394	chr15	protein_coding	predicted gene 29394
known_NIR_6233	chr15	57894496	57897480	-	57894496;57895475	57895380;57897480	ES	ENSMUST00000100655.5	known	0.00	0	38.0	0	47;29	n	0.00	0	60.0	0	68;52	n	0.00	0	98.5	0	127;70	n	0.04	2	51.5	2	64;39	y	0.00	0	59.0	0	64;54	n	0.00	0	48.5	0	60;37	n	0.02	1	62.5	1	70;55	n	0.00	0	43.5	0	50;37	n	0.00	0	32.5	0	35;30	n	0.00	0	52.0	0	60;44	n	0.02	1	46.0	1	48;44	n	0.00	0	57.0	0	66;48	n	ENSMUSG00000101892.2	9130401M01Rik	chr15	protein_coding	RIKEN cDNA 9130401M01 gene
known_NIR_6234	chr15	57895475	57932715	-	57895475	57897480	5pMXE	ENSMUST00000100655.5	known	0.03	1	29	1	29	n	0.00	0	52	0	52	n	0.03	2	70	2	70	y	0.07	3	39	3	39	y	0.00	0	54	0	54	n	0.03	1	37	1	37	n	0.02	1	55	1	55	n	0.00	0	37	0	37	n	0.12	4	30	4	30	y	0.04	2	44	2	44	y	0.00	0	44	0	44	n	0.00	0	48	0	48	n	ENSMUSG00000101892.2	9130401M01Rik	chr15	protein_coding	RIKEN cDNA 9130401M01 gene
known_NIR_6235	chr15	57912181	57915620	-	57912181	57932715	A5SS	ENSMUST00000177504.9	known	0.92	77	7	77	7	y	1.00	82	0	82	0	n	0.96	106	4	106	4	y	0.98	97	2	97	2	y	0.96	87	4	87	4	y	0.95	54	3	54	3	y	0.95	122	6	122	6	y	1.00	43	0	43	0	n	0.92	58	5	58	5	y	0.96	106	4	106	4	y	0.96	64	3	64	3	y	0.97	93	3	93	3	y	ENSMUSG00000022362.14	Gm29394	chr15	protein_coding	predicted gene 29394
known_NIR_6236	chr15	57912181	57932715	-	57912181;57918478	57915620;57932715	ES	ENSMUST00000070143.13	known	0.12	7	51.5	7	77;26	y	0.00	0	51.0	0	82;20	n	0.05	4	72.0	4	106;38	y	0.03	2	69.5	2	97;42	y	0.05	4	73.0	4	87;59	y	0.07	3	38.5	3	54;23	y	0.07	6	75.5	6	122;29	y	0.00	0	37.5	0	43;32	n	0.10	5	44.5	5	58;31	y	0.05	4	81.0	4	106;56	y	0.07	3	43.0	3	64;22	y	0.04	3	77.0	3	93;61	y	ENSMUSG00000022361.15	Zhx1	chr15	protein_coding	zinc fingers and homeoboxes 1
known_NIR_6237	chr15	57918478	57932715	-	57894496	57932715	A3SS	ENSMUST00000176935.8	known	1.00	26	0	26	0	n	1.00	20	0	20	0	n	1.00	38	0	38	0	n	1.00	42	0	42	0	n	1.00	59	0	59	0	n	1.00	23	0	23	0	n	1.00	29	0	29	0	n	1.00	32	0	32	0	n	0.97	31	1	31	1	n	1.00	56	0	56	0	n	1.00	22	0	22	0	n	0.97	61	2	61	2	y	ENSMUSG00000022362.14	Gm29394	chr15	protein_coding	predicted gene 29394
known_NIR_6238	chr15	57918478	57932715	-	57895475	57932715	A3SS	ENSMUST00000177176.8	known	0.96	26	1	26	1	n	1.00	20	0	20	0	n	0.95	38	2	38	2	y	0.93	42	3	42	3	y	1.00	59	0	59	0	n	0.96	23	1	23	1	n	0.97	29	1	29	1	n	1.00	32	0	32	0	n	0.89	31	4	31	4	y	0.97	56	2	56	2	y	1.00	22	0	22	0	n	1.00	61	0	61	0	n	ENSMUSG00000022362.14	Gm29394	chr15	protein_coding	predicted gene 29394
known_NIR_6239	chr15	57918478	57932715	-	57912181	57932715	A3SS	ENSMUST00000177504.9	known	0.79	26	7	26	7	y	1.00	20	0	20	0	n	0.90	38	4	38	4	y	0.95	42	2	42	2	y	0.94	59	4	59	4	y	0.88	23	3	23	3	y	0.83	29	6	29	6	y	1.00	32	0	32	0	n	0.86	31	5	31	5	y	0.93	56	4	56	4	y	0.88	22	3	22	3	y	0.95	61	3	61	3	y	ENSMUSG00000022362.14	Gm29394	chr15	protein_coding	predicted gene 29394
known_NIR_6240	chr15	57918478	57932715	-	57918478;57927576	57927451;57932715	ES	ENSMUST00000110168.8	known	0.87	26	4.0	26	2;6	y	0.98	20	0.5	20	0;1	n	0.80	38	9.5	38	5;14	y	0.86	42	7.0	42	9;5	y	0.87	59	9.0	59	7;11	y	0.82	23	5.0	23	0;10	n	0.92	29	2.5	29	3;2	y	0.91	32	3.0	32	4;2	y	0.87	31	4.5	31	4;5	y	0.90	56	6.5	56	5;8	y	0.83	22	4.5	22	2;7	y	0.95	61	3.5	61	5;2	y	ENSMUSG00000022361.15	Zhx1	chr15	protein_coding	zinc fingers and homeoboxes 1
known_NIR_6241	chr15	57927576	57932715	-	57895475	57932715	A3SS	ENSMUST00000177176.8	known	0.86	6	1	6	1	n	1.00	1	0	1	0	n	0.88	14	2	14	2	y	0.62	5	3	5	3	n	1.00	11	0	11	0	n	0.91	10	1	10	1	n	0.67	2	1	2	1	n	1.00	2	0	2	0	n	0.56	5	4	5	4	n	0.80	8	2	8	2	y	1.00	7	0	7	0	n	1.00	2	0	2	0	n	ENSMUSG00000022362.14	Gm29394	chr15	protein_coding	predicted gene 29394
known_NIR_6242	chr15	57927576	57932715	-	57912181	57932715	A3SS	ENSMUST00000177504.9	known	0.46	6	7	6	7	y	1.00	1	0	1	0	n	0.78	14	4	14	4	y	0.71	5	2	5	2	n	0.73	11	4	11	4	y	0.77	10	3	10	3	y	0.25	2	6	2	6	n	1.00	2	0	2	0	n	0.50	5	5	5	5	y	0.67	8	4	8	4	y	0.70	7	3	7	3	y	0.40	2	3	2	3	n	ENSMUSG00000022362.14	Gm29394	chr15	protein_coding	predicted gene 29394
known_NIR_6243	chr15	57932825	57939482	-	57932825	57939553	A5SS	ENSMUST00000176935.8	known	0.00	0	21	0	21	n	0.00	0	15	0	15	n	0.07	3	39	3	39	y	0.03	1	34	1	34	n	0.00	0	39	0	39	n	0.00	0	28	0	28	n	0.03	1	29	1	29	n	0.00	0	20	0	20	n	0.00	0	14	0	14	n	0.00	0	36	0	36	n	0.00	0	14	0	14	n	0.00	0	25	0	25	n	ENSMUSG00000022362.14	Gm29394	chr15	protein_coding	predicted gene 29394
known_NIR_6244	chr15	58011837	58014002	+	58011829	58014002	A5SS	ENSMUST00000067563.9	known	0.18	2	9	2	9	y	0.23	3	10	3	10	y	0.14	3	18	3	18	y	0.22	2	7	2	7	n	0.27	8	22	8	22	y	0.17	2	10	2	10	y	0.17	3	15	3	15	y	0.19	3	13	3	13	y	0.33	7	14	7	14	y	0.26	5	14	5	14	y	0.22	4	14	4	14	y	0.33	5	10	5	10	y	ENSMUSG00000022359.11	Wdyhv1	chr15	protein_coding	WDYHV motif containing 1
known_NIR_6245	chr15	58014052	58014378	+	58014052	58015993	A3SS	ENSMUST00000067563.9	known	0.00	0	7	0	7	n	0.00	0	19	0	19	n	0.00	0	18	0	18	n	0.07	1	13	1	13	n	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.00	0	15	0	15	n	0.13	2	13	2	13	y	0.00	0	16	0	16	n	0.00	0	17	0	17	n	0.00	0	12	0	12	n	0.00	0	19	0	19	n	ENSMUSG00000022359.11	Wdyhv1	chr15	protein_coding	WDYHV motif containing 1
known_NIR_6246	chr15	58014052	58015993	+	58014052	58021298	A3SS	ENSMUST00000226955.2	known	1.00	7	0	7	0	n	1.00	19	0	19	0	n	0.86	18	3	18	3	y	1.00	13	0	13	0	n	0.94	16	1	16	1	n	1.00	13	0	13	0	n	1.00	15	0	15	0	n	0.87	13	2	13	2	y	1.00	16	0	16	0	n	1.00	17	0	17	0	n	0.92	12	1	12	1	n	1.00	19	0	19	0	n	ENSMUSG00000022359.11	Wdyhv1	chr15	protein_coding	WDYHV motif containing 1
known_NIR_6247	chr15	58014052	58016976	+	58014052;58016141	58015993;58016976	ES	ENSMUST00000067563.9	known	0.00	0	12.0	0	7;17	n	0.00	0	17.0	0	19;15	n	0.05	1	18.5	1	18;19	n	0.00	0	18.0	0	13;23	n	0.00	0	15.0	0	16;14	n	0.06	1	16.5	1	13;20	n	0.00	0	19.5	0	15;24	n	0.09	1	10.5	1	13;8	n	0.27	6	16.0	6	16;16	y	0.17	4	19.5	4	17;22	y	0.06	1	17.0	1	12;22	n	0.00	0	16.5	0	19;14	n	ENSMUSG00000022359.11	Wdyhv1	chr15	protein_coding	WDYHV motif containing 1
known_NIR_6248	chr15	58014052	58021298	+	58017100	58021298	5pMXE	ENSMUST00000227615.2	known	0.00	0	22	0	22	n	0.00	0	20	0	20	n	0.12	3	22	3	22	y	0.00	0	28	0	28	n	0.03	1	37	1	37	n	0.00	0	14	0	14	n	0.00	0	29	0	29	n	0.12	2	14	2	14	y	0.00	0	19	0	19	n	0.00	0	26	0	26	n	0.03	1	28	1	28	n	0.00	0	24	0	24	n	ENSMUSG00000022359.11	Wdyhv1	chr15	protein_coding	WDYHV motif containing 1
known_NIR_6249	chr15	58017100	58018535	+	58017100	58021298	A3SS	ENSMUST00000067563.9	known	0.00	0	22	0	22	n	0.00	0	20	0	20	n	0.00	0	22	0	22	n	0.00	0	28	0	28	n	0.00	0	37	0	37	n	0.00	0	14	0	14	n	0.03	1	29	1	29	n	0.00	0	14	0	14	n	0.10	2	19	2	19	y	0.00	0	26	0	26	n	0.10	3	28	3	28	y	0.00	0	24	0	24	n	ENSMUSG00000022359.11	Wdyhv1	chr15	protein_coding	WDYHV motif containing 1
known_NIR_6250	chr15	58761343	58808117	+	58761343	58770158	3pMXE	ENSMUST00000036904.7	known	0.08	4	45	4	45	y	0.05	2	36	2	36	y	0.00	0	74	0	74	n	0.02	1	62	1	62	n	0.04	3	65	3	65	y	0.12	6	46	6	46	y	0.06	4	61	4	61	y	0.07	3	39	3	39	y	0.04	2	53	2	53	y	0.10	10	87	10	87	y	0.05	4	73	4	73	y	0.08	5	55	5	55	y	ENSMUSG00000037075.8	Rnf139	chr15	protein_coding	ring finger protein 139
known_NIR_6251	chr15	58772919;58776270	58776129;58776583	-	58772919	58776583	cassetteExon	ENSMUST00000227540.2	known	0.00	0.0	26	0;0	26	n	0.00	0.0	23	0;0	23	n	0.00	0.0	34	0;0	34	n	0.08	1.5	18	3;0	18	n	0.02	0.5	25	0;1	25	n	0.00	0.0	25	0;0	25	n	0.00	0.0	32	0;0	32	n	0.02	0.5	22	0;1	22	n	0.00	0.0	22	0;0	22	n	0.09	3.0	31	2;4	31	y	0.05	1.5	30	3;0	30	n	0.01	0.5	37	0;1	37	n	ENSMUSG00000050891.11	Tatdn1	chr15	protein_coding	TatD DNase domain containing 1
known_NIR_6252	chr15	58777660	58788001	-	58777660;58781498	58781422;58788001	ES	ENSMUST00000110155.3	known	0.00	0	25.0	0	24;26	n	0.09	2	19.5	2	22;17	y	0.09	4	39.0	4	34;44	y	0.00	0	31.0	0	29;33	n	0.00	0	36.0	0	36;36	n	0.09	2	19.5	2	25;14	y	0.14	5	31.5	5	33;30	y	0.06	1	16.0	1	19;13	n	0.04	1	26.5	1	26;27	n	0.10	2	19.0	2	17;21	y	0.00	0	24.0	0	24;24	n	0.00	0	30.0	0	31;29	n	ENSMUSG00000050891.11	Tatdn1	chr15	protein_coding	TatD DNase domain containing 1
known_NIR_6253	chr15	58777660	58788001	-	58781498	58788001	3pMXE	ENSMUST00000226835.2	known	0.00	0	26	0	26	n	0.11	2	17	2	17	y	0.08	4	44	4	44	y	0.00	0	33	0	33	n	0.00	0	36	0	36	n	0.12	2	14	2	14	y	0.14	5	30	5	30	y	0.07	1	13	1	13	n	0.04	1	27	1	27	n	0.09	2	21	2	21	y	0.00	0	24	0	24	n	0.00	0	29	0	29	n	ENSMUSG00000050891.11	Tatdn1	chr15	protein_coding	TatD DNase domain containing 1
known_NIR_6254	chr15	58788041	58792989	-	58788041;58788211	58788126;58792989	ES	ENSMUST00000110155.3	known	0.10	3	27.5	3	29;26	y	0.00	0	20.5	0	23;18	n	0.00	0	46.0	0	47;45	n	0.00	0	27.0	0	28;26	n	0.05	2	39.5	2	43;36	y	0.00	0	22.0	0	15;29	n	0.00	0	41.5	0	44;39	n	0.00	0	21.0	0	23;19	n	0.00	0	26.5	0	26;27	n	0.03	1	39.0	1	38;40	n	0.04	1	24.0	1	26;22	n	0.00	0	38.0	0	37;39	n	ENSMUSG00000050891.11	Tatdn1	chr15	protein_coding	TatD DNase domain containing 1
known_NIR_6255	chr15	58788041	58792989	-	58788211	58792989	3pMXE	ENSMUST00000226505.2	known	0.10	3	26	3	26	y	0.00	0	18	0	18	n	0.00	0	45	0	45	n	0.00	0	26	0	26	n	0.05	2	36	2	36	y	0.00	0	29	0	29	n	0.00	0	39	0	39	n	0.00	0	19	0	19	n	0.00	0	27	0	27	n	0.02	1	40	1	40	n	0.04	1	22	1	22	n	0.00	0	39	0	39	n	ENSMUSG00000050891.11	Tatdn1	chr15	protein_coding	TatD DNase domain containing 1
known_NIR_6256	chr15	58793266	58795678	-	58793266	58795754	A5SS	ENSMUST00000110155.3	known	0.09	2	20	2	20	y	0.00	0	25	0	25	n	0.08	3	35	3	35	y	0.07	2	27	2	27	y	0.14	5	30	5	30	y	0.03	1	35	1	35	n	0.15	6	35	6	35	y	0.12	3	21	3	21	y	0.09	3	32	3	32	y	0.17	6	30	6	30	y	0.14	3	18	3	18	y	0.07	1	13	1	13	n	ENSMUSG00000050891.11	Tatdn1	chr15	protein_coding	TatD DNase domain containing 1
known_NIR_6257	chr15	58793266	58798285	-	58793266;58795817	58795754;58798285	ES	ENSMUST00000110155.3	known	0.20	6	24.0	6	20;28	y	0.14	4	24.0	4	25;23	y	0.03	1	33.5	1	35;32	n	0.10	3	28.5	3	27;30	y	0.15	6	33.0	6	30;36	y	0.00	0	37.0	0	35;39	n	0.05	2	38.0	2	35;41	y	0.00	0	25.5	0	21;30	n	0.18	7	31.0	7	32;30	y	0.06	2	33.5	2	30;37	y	0.08	2	22.5	2	18;27	y	0.27	6	16.5	6	13;20	y	ENSMUSG00000050891.11	Tatdn1	chr15	protein_coding	TatD DNase domain containing 1
known_NIR_6258	chr15	58793266;58795817	58795678;58798285	-	58793266	58798285	cassetteExon	ENSMUST00000227540.2	known	0.71	15.0	6	2;28	6	y	0.74	11.5	4	0;23	4	n	0.95	17.5	1	3;32	1	n	0.84	16.0	3	2;30	3	y	0.77	20.5	6	5;36	6	y	1.00	20.0	0	1;39	0	n	0.92	23.5	2	6;41	2	y	1.00	16.5	0	3;30	0	n	0.70	16.5	7	3;30	7	y	0.91	21.5	2	6;37	2	y	0.88	15.0	2	3;27	2	y	0.64	10.5	6	1;20	6	n	ENSMUSG00000050891.11	Tatdn1	chr15	protein_coding	TatD DNase domain containing 1
known_NIR_6259	chr15	58798334	58800393	-	58798334	58800533	A5SS	ENSMUST00000110155.3	known	0.15	6	34	6	34	y	0.18	4	18	4	18	y	0.10	3	27	3	27	y	0.10	2	19	2	19	y	0.09	4	40	4	40	y	0.09	3	30	3	30	y	0.15	7	39	7	39	y	0.21	6	22	6	22	y	0.12	3	22	3	22	y	0.10	3	28	3	28	y	0.00	0	21	0	21	n	0.20	5	20	5	20	y	ENSMUSG00000050891.11	Tatdn1	chr15	protein_coding	TatD DNase domain containing 1
known_NIR_6260	chr15	58800598	58805132	-	58800598	58805528	A5SS	ENSMUST00000110155.3	known	0.00	0	15	0	15	n	0.00	0	15	0	15	n	0.17	3	15	3	15	y	0.00	0	15	0	15	n	0.03	1	29	1	29	n	0.06	1	17	1	17	n	0.10	3	26	3	26	y	0.20	3	12	3	12	y	0.00	0	24	0	24	n	0.00	0	20	0	20	n	0.21	4	15	4	15	y	0.00	0	16	0	16	n	ENSMUSG00000050891.11	Tatdn1	chr15	protein_coding	TatD DNase domain containing 1
known_NIR_6261	chr15	58805787	58808117	+	58761343	58808117	A5SS	ENSMUST00000228787.2	known	1.00	1130	4	1130	4	y	1.00	1134	2	1134	2	y	1.00	1202	0	1202	0	n	1.00	1261	1	1261	1	n	1.00	1391	3	1391	3	y	0.99	719	6	719	6	y	1.00	1532	4	1532	4	y	1.00	714	3	714	3	y	1.00	1075	2	1075	2	y	0.99	1693	10	1693	10	y	1.00	1410	4	1410	4	y	1.00	1528	5	1528	5	y	ENSMUSG00000115463.2	Gm49356	chr15	protein_coding	predicted gene, 49356
known_NIR_6262	chr15	58817868	58823319	-	58817868;58819369	58819175;58823319	ES	ENSMUST00000080371.8	known	0.11	20	154.5	20	181;128	y	0.08	12	130.0	12	153;107	y	0.04	9	193.5	9	235;152	y	0.06	15	226.5	15	245;208	y	0.11	24	195.0	24	244;146	y	0.06	7	116.5	7	134;99	y	0.11	22	180.5	22	213;148	y	0.06	8	124.0	8	148;100	y	0.07	11	147.0	11	174;120	y	0.06	14	223.5	14	251;196	y	0.07	8	108.0	8	121;95	y	0.04	11	235.5	11	252;219	y	ENSMUSG00000022353.11	Mtss1	chr15	protein_coding	MTSS I-BAR domain containing 1
known_NIR_6263	chr15	58817868	58823319	-	58819369	58823319	3pMXE	ENSMUST00000227290.2	known	0.14	20	128	20	128	y	0.10	12	107	12	107	y	0.06	9	152	9	152	y	0.07	15	208	15	208	y	0.14	24	146	24	146	y	0.07	7	99	7	99	y	0.13	22	148	22	148	y	0.07	8	100	8	100	y	0.08	11	120	11	120	y	0.07	14	196	14	196	y	0.08	8	95	8	95	y	0.05	11	219	11	219	y	ENSMUSG00000022353.11	Mtss1	chr15	protein_coding	MTSS I-BAR domain containing 1
known_NIR_6264	chr15	58828439	58840688	-	58828439;58836357	58836346;58840688	ES	ENSMUST00000080371.8	known	0.65	56	30.5	56	38;23	y	0.55	39	31.5	39	33;30	y	0.87	136	20.0	136	22;18	y	0.60	73	49.5	73	53;46	y	0.64	99	54.5	99	65;44	y	0.76	54	17.5	54	20;15	y	0.60	64	43.5	64	50;37	y	0.72	60	23.0	60	28;18	y	0.54	51	43.5	51	47;40	y	0.63	99	59.0	99	68;50	y	0.67	51	25.0	51	24;26	y	0.61	95	60.5	95	68;53	y	ENSMUSG00000022353.11	Mtss1	chr15	protein_coding	MTSS I-BAR domain containing 1
known_NIR_6265	chr15	59193343	59194685	+	59193343	59194716	A3SS	ENSMUST00000162142.2	known	1.00	149	0	149	0	n	1.00	86	0	86	0	n	1.00	421	1	421	1	n	1.00	132	0	132	0	n	1.00	415	0	415	0	n	0.99	274	2	274	2	y	1.00	286	0	286	0	n	1.00	242	0	242	0	n	1.00	104	0	104	0	n	1.00	146	0	146	0	n	1.00	161	0	161	0	n	1.00	152	0	152	0	n	ENSMUSG00000022351.15	Sqle	chr15	protein_coding	squalene epoxidase
known_NIR_6266	chr15	61857800	61859359	+	61857800	61859356	A3SS	ENSMUST00000161976.8	known	0.50	1	1	1	1	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.50	8	8	8	8	y	0.33	2	4	2	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.18	3	14	3	14	y	ENSMUSG00000022346.18	Myc	chr15	protein_coding	myelocytomatosis oncogene
known_NIR_6267	chr15	63821976	63829434	-	63821976	63828449	A5SS&ES	ENSMUST00000228908.2	known	0.23	3	10	3	10	y	0.00	0	7	0	7	n	0.17	6	30	6	30	y	0.35	6	11	6	11	y	0.47	8	9	8	9	y	0.00	0	7	0	7	n	0.22	5	18	5	18	y	0.40	2	3	2	3	n	0.40	4	6	4	6	y	0.17	2	10	2	10	y	0.25	2	6	2	6	n	0.19	4	17	4	17	y	ENSMUSG00000022378.15	Cyrib	chr15	protein_coding	CYFIP related Rac1 interactor B
known_NIR_6268	chr15	63821976	63829434	-	63821976;63828531	63828449;63829434	ES	ENSMUST00000227024.2	known	0.27	3	8.0	3	10;6	y	0.00	0	4.0	0	7;1	n	0.26	6	17.0	6	30;4	y	0.52	6	5.5	6	11;0	n	0.52	8	7.5	8	9;6	y	0.00	0	4.0	0	7;1	n	0.33	5	10.0	5	18;2	y	0.50	2	2.0	2	3;1	n	0.44	4	5.0	4	6;4	y	0.20	2	8.0	2	10;6	y	0.31	2	4.5	2	6;3	y	0.30	4	9.5	4	17;2	y	ENSMUSG00000022378.15	Cyrib	chr15	protein_coding	CYFIP related Rac1 interactor B
known_NIR_6269	chr15	63821976;63829516	63829434;63842779	-	63821976;63828531	63828449;63842779	MXE	ENSMUST00000063838.11	known	0.32	3.0	6.5	3;3	10;3	y	0.30	1.5	3.5	0;3	7;0	n	0.17	5.0	24.0	6;4	30;18	y	0.46	6.0	7.0	6;6	11;3	y	0.58	9.0	6.5	8;10	9;4	y	0.25	1.5	4.5	0;3	7;2	n	0.30	5.0	11.5	5;5	18;5	y	0.58	3.5	2.5	2;5	3;2	y	0.40	3.0	4.5	4;2	6;3	y	0.35	4.0	7.5	2;6	10;5	y	0.44	3.5	4.5	2;5	6;3	y	0.35	5.5	10.0	4;7	17;3	y	ENSMUSG00000022378.15	Cyrib	chr15	protein_coding	CYFIP related Rac1 interactor B
known_NIR_6270	chr15	63828531;63829516	63829434;63842779	-	63828531	63842779	cassetteExon	ENSMUST00000063838.11	known	0.60	4.5	3	6;3	3	y	1.00	2.0	0	1;3	0	n	0.18	4.0	18	4;4	18	y	0.50	3.0	3	0;6	3	n	0.67	8.0	4	6;10	4	y	0.50	2.0	2	1;3	2	n	0.41	3.5	5	2;5	5	y	0.60	3.0	2	1;5	2	n	0.50	3.0	3	4;2	3	n	0.55	6.0	5	6;6	5	y	0.57	4.0	3	3;5	3	y	0.60	4.5	3	2;7	3	y	ENSMUSG00000022378.15	Cyrib	chr15	protein_coding	CYFIP related Rac1 interactor B
known_NIR_6271	chr15	63842817	63894419	-	63842817	63869747	5pMXE	ENSMUST00000164532.3	known	0.00	0	5	0	5	n	0.50	3	3	3	3	n	0.19	5	21	5	21	y	0.25	2	6	2	6	n	0.31	5	11	5	11	y	0.20	2	8	2	8	y	1.00	5	0	5	0	n	0.27	3	8	3	8	y	0.60	3	2	3	2	n	0.12	1	7	1	7	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	ENSMUSG00000022378.15	Cyrib	chr15	protein_coding	CYFIP related Rac1 interactor B
known_NIR_6272	chr15	63974321	63991807	-	63974321;63982925	63982755;63991807	ES	ENSMUST00000177371.8	known	0.19	2	8.5	2	11;6	y	0.10	1	9.0	1	6;12	n	0.39	14	22.0	14	20;24	y	0.38	4	6.5	4	5;8	y	0.40	5	7.5	5	8;7	y	0.35	3	5.5	3	10;1	n	0.60	12	8.0	12	8;8	y	0.14	2	12.0	2	8;16	y	0.50	5	5.0	5	10;0	n	0.46	6	7.0	6	9;5	y	0.22	2	7.0	2	2;12	y	0.46	9	10.5	9	6;15	y	ENSMUSG00000022377.17	Asap1	chr15	protein_coding	ArfGAP with SH3 domain, ankyrin repeat and PH domain1
known_NIR_6273	chr15	64024779	64030767	-	64024779	64030731	A5SS	ENSMUST00000177371.8	known	0.78	7	2	7	2	n	0.80	4	1	4	1	n	0.68	13	6	13	6	y	0.78	7	2	7	2	n	0.31	4	9	4	9	y	1.00	4	0	4	0	n	0.73	8	3	8	3	y	0.64	7	4	7	4	y	0.71	5	2	5	2	n	0.50	8	8	8	8	y	0.30	3	7	3	7	y	1.00	10	0	10	0	n	ENSMUSG00000022377.17	Asap1	chr15	protein_coding	ArfGAP with SH3 domain, ankyrin repeat and PH domain1
known_NIR_6274	chr15	6453731	6458777	+	6453731	6454116	A3SS&ES	ENSMUST00000078019.13	known	0.30	3	7	3	7	y	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	21	0	21	n	0.00	0	5	0	5	n	0.10	1	9	1	9	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.17	1	5	1	5	n	ENSMUSG00000022150.17	Dab2	chr15	protein_coding	disabled 2, mitogen-responsive phosphoprotein
known_NIR_6275	chr15	6453731	6458777	+	6453731;6454178	6454116;6458777	ES	ENSMUST00000080880.12	known	0.30	3	7.0	3	7;7	y	0.00	0	4.0	0	5;3	n	0.00	0	9.5	0	14;5	n	0.00	0	5.0	0	7;3	n	0.00	0	14.5	0	21;8	n	0.00	0	2.5	0	5;0	n	0.11	1	8.0	1	9;7	n	0.00	0	3.0	0	3;3	n	0.00	0	2.0	0	3;1	n	0.00	0	7.0	0	8;6	n	0.00	0	8.0	0	12;4	n	0.18	1	4.5	1	5;4	n	ENSMUSG00000022150.17	Dab2	chr15	protein_coding	disabled 2, mitogen-responsive phosphoprotein
known_NIR_6276	chr15	6454178	6457002	+	6454178	6460435	A3SS	ENSMUST00000078019.13	known	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.67	2	1	2	1	n	0.33	1	2	1	2	n	0.27	3	8	3	8	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000022150.17	Dab2	chr15	protein_coding	disabled 2, mitogen-responsive phosphoprotein
known_NIR_6277	chr15	6454178	6458777	+	6454178	6457002	3pMXE	ENSMUST00000161040.8	known	1.00	7	0	7	0	n	0.75	3	1	3	1	n	0.71	5	2	5	2	n	0.75	3	1	3	1	n	0.73	8	3	8	3	y	-	-	-	-	-	-	1.00	7	0	7	0	n	1.00	3	0	3	0	n	1.00	1	0	1	0	n	0.86	6	1	6	1	n	1.00	4	0	4	0	n	1.00	4	0	4	0	n	ENSMUSG00000022150.17	Dab2	chr15	protein_coding	disabled 2, mitogen-responsive phosphoprotein
known_NIR_6278	chr15	6454178	6458777	+	6454178	6460435	A3SS	ENSMUST00000078019.13	known	0.88	7	1	7	1	n	1.00	3	0	3	0	n	0.83	5	1	5	1	n	0.60	3	2	3	2	n	0.50	8	8	8	8	y	0.00	0	2	0	2	n	0.88	7	1	7	1	n	0.50	3	3	3	3	n	0.50	1	1	1	1	n	0.86	6	1	6	1	n	0.80	4	1	4	1	n	1.00	4	0	4	0	n	ENSMUSG00000022150.17	Dab2	chr15	protein_coding	disabled 2, mitogen-responsive phosphoprotein
known_NIR_6279	chr15	6454178	6460435	+	6454178;6459430	6458777;6460435	ES	ENSMUST00000080880.12	known	0.15	1	5.5	1	7;4	n	0.00	0	3.0	0	3;3	n	0.09	1	10.0	1	5;15	n	0.31	2	4.5	2	3;6	y	0.52	8	7.5	8	8;7	y	0.80	2	0.5	2	0;1	n	0.11	1	8.0	1	7;9	n	0.55	3	2.5	3	3;2	n	0.40	1	1.5	1	1;2	n	0.11	1	8.5	1	6;11	n	0.20	1	4.0	1	4;4	n	0.00	0	4.0	0	4;4	n	ENSMUSG00000022150.17	Dab2	chr15	protein_coding	disabled 2, mitogen-responsive phosphoprotein
known_NIR_6280	chr15	6459430	6460435	+	6454178	6460435	A5SS	ENSMUST00000078019.13	known	0.80	4	1	4	1	n	1.00	3	0	3	0	n	0.94	15	1	15	1	n	0.75	6	2	6	2	n	0.47	7	8	7	8	y	0.33	1	2	1	2	n	0.90	9	1	9	1	n	0.40	2	3	2	3	n	0.67	2	1	2	1	n	0.92	11	1	11	1	n	0.80	4	1	4	1	n	1.00	4	0	4	0	n	ENSMUSG00000022150.17	Dab2	chr15	protein_coding	disabled 2, mitogen-responsive phosphoprotein
known_NIR_6281	chr15	6474964;6483855	6483696;6487658	+	6474964	6487658	cassetteExon	ENSMUST00000022749.17	known	0.02	18.5	930	13;24	930	y	0.02	15.0	735	7;23	735	y	0.01	3.0	375	4;2	375	y	0.02	31.0	1858	20;42	1858	y	0.02	27.0	1684	26;28	1684	y	0.02	7.0	371	5;9	371	y	0.03	35.0	1321	28;42	1321	y	0.02	10.5	650	5;16	650	y	0.02	28.5	1375	28;29	1375	y	0.03	47.0	1769	44;50	1769	y	0.02	27.0	1126	25;29	1126	y	0.02	45.0	1921	41;49	1921	y	ENSMUSG00000022149.19	C9	chr15	protein_coding	complement component 9
known_NIR_6282	chr15	6521020	6527913	+	6521020;6526660	6526432;6527913	ES	ENSMUST00000022749.17	known	0.02	30	1761.5	30	1832;1691	y	0.02	45	1871.5	45	1716;2027	y	0.03	14	493.5	14	513;474	y	0.01	33	2205.0	33	2358;2052	y	0.02	40	2124.5	40	2227;2022	y	0.03	13	458.5	13	495;422	y	0.02	40	2195.5	40	2130;2261	y	0.01	9	723.0	9	774;672	y	0.02	38	2336.0	38	2423;2249	y	0.02	64	2515.5	64	2636;2395	y	0.03	59	1917.5	59	1934;1901	y	0.02	57	2469.5	57	2657;2282	y	ENSMUSG00000022149.19	C9	chr15	protein_coding	complement component 9
known_NIR_6283	chr15	65682173	65687184	+	65659095	65687184	A5SS	ENSMUST00000015146.16	known	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	52	0	52	n	0.06	2	30	2	30	y	0.05	2	35	2	35	y	0.00	0	17	0	17	n	0.06	2	29	2	29	y	0.00	0	19	0	19	n	0.00	0	23	0	23	n	0.03	1	36	1	36	n	0.12	2	14	2	14	y	0.07	2	27	2	27	y	ENSMUSG00000015002.19	Efr3a	chr15	protein_coding	EFR3 homolog A
known_NIR_6284	chr15	65687327	65690282	+	65687260	65690282	A5SS	ENSMUST00000015146.16	known	0.00	0	22	0	22	n	0.09	2	20	2	20	y	0.07	5	67	5	67	y	0.04	2	45	2	45	y	0.10	7	64	7	64	y	0.03	1	34	1	34	n	0.19	8	34	8	34	y	0.08	2	22	2	22	y	0.17	6	30	6	30	y	0.02	1	51	1	51	n	0.13	3	20	3	20	y	0.05	2	40	2	40	y	ENSMUSG00000015002.19	Efr3a	chr15	protein_coding	EFR3 homolog A
known_NIR_6285	chr15	65691719	65701576	+	65691719	65696463	3pMXE	ENSMUST00000172756.2	known	0.00	0	21	0	21	n	0.00	0	13	0	13	n	0.00	0	49	0	49	n	0.00	0	35	0	35	n	0.00	0	57	0	57	n	0.00	0	15	0	15	n	0.05	2	38	2	38	y	0.00	0	35	0	35	n	0.00	0	17	0	17	n	0.00	0	41	0	41	n	0.00	0	29	0	29	n	0.02	1	42	1	42	n	ENSMUSG00000015002.19	Efr3a	chr15	protein_coding	EFR3 homolog A
known_NIR_6286	chr15	65691719	65701576	+	65691719;65696584	65696463;65701576	ES	ENSMUST00000015146.16	known	0.00	0	21.0	0	21;21	n	0.00	0	17.0	0	13;21	n	0.00	0	63.0	0	49;77	n	0.00	0	39.0	0	35;43	n	0.00	0	64.5	0	57;72	n	0.00	0	20.0	0	15;25	n	0.05	2	40.0	2	38;42	y	0.00	0	35.5	0	35;36	n	0.00	0	24.5	0	17;32	n	0.00	0	46.0	0	41;51	n	0.00	0	31.0	0	29;33	n	0.02	1	43.5	1	42;45	n	ENSMUSG00000015002.19	Efr3a	chr15	protein_coding	EFR3 homolog A
known_NIR_6287	chr15	65725455	65725742	+	65725455	65726478	A3SS	ENSMUST00000015146.16	known	0.04	2	47	2	47	y	0.14	4	24	4	24	y	0.01	1	84	1	84	n	0.00	0	53	0	53	n	0.08	7	78	7	78	y	0.00	0	24	0	24	n	0.05	4	71	4	71	y	0.05	2	37	2	37	y	0.02	1	44	1	44	n	0.05	3	58	3	58	y	0.00	0	37	0	37	n	0.01	1	70	1	70	n	ENSMUSG00000015002.19	Efr3a	chr15	protein_coding	EFR3 homolog A
known_NIR_6288	chr15	65739168	65740803	+	65739168	65743002	A3SS	ENSMUST00000015146.16	known	0.02	2	80	2	80	y	0.00	0	44	0	44	n	0.00	0	89	0	89	n	0.00	0	66	0	66	n	0.00	0	97	0	97	n	0.00	0	41	0	41	n	0.00	0	86	0	86	n	0.00	0	58	0	58	n	0.00	0	58	0	58	n	0.00	0	84	0	84	n	0.00	0	46	0	46	n	0.00	0	84	0	84	n	ENSMUSG00000015002.19	Efr3a	chr15	protein_coding	EFR3 homolog A
known_NIR_6289	chr15	66449696	66451922	+	66449696	66451918	A3SS	ENSMUST00000230882.2	known	0.23	3	10	3	10	y	0.29	2	5	2	5	n	0.20	6	24	6	24	y	0.33	6	12	6	12	y	0.25	6	18	6	18	y	0.25	8	24	8	24	y	0.13	2	13	2	13	y	0.19	3	13	3	13	y	0.00	0	9	0	9	n	0.15	2	11	2	11	y	0.27	3	8	3	8	y	0.14	2	12	2	12	y	ENSMUSG00000072501.6	Phf20l1	chr15	protein_coding	PHD finger protein 20-like 1
known_NIR_6290	chr15	66466827	66466952	+	66466827	66466964	A3SS	ENSMUST00000230882.2	known	0.00	0	18	0	18	n	0.00	0	10	0	10	n	0.05	2	42	2	42	y	0.08	2	24	2	24	y	0.03	1	36	1	36	n	0.00	0	25	0	25	n	0.00	0	29	0	29	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	23	0	23	n	0.00	0	14	0	14	n	0.00	0	24	0	24	n	ENSMUSG00000072501.6	Phf20l1	chr15	protein_coding	PHD finger protein 20-like 1
known_NIR_6291	chr15	66469296	66469514	+	66469296	66469526	A3SS	ENSMUST00000230882.2	known	0.50	8	8	8	8	y	0.33	2	4	2	4	n	0.44	7	9	7	9	y	0.46	6	7	6	7	y	0.46	6	7	6	7	y	0.40	4	6	4	6	y	0.22	2	7	2	7	n	0.64	9	5	9	5	y	0.50	4	4	4	4	n	0.50	8	8	8	8	y	0.38	3	5	3	5	n	0.41	7	10	7	10	y	ENSMUSG00000072501.6	Phf20l1	chr15	protein_coding	PHD finger protein 20-like 1
known_NIR_6292	chr15	66469296	66475876	+	66469296;66469603	66469514;66475876	ES	ENSMUST00000230915.2	known	0.30	4	9.5	4	8;11	y	0.00	0	8.0	0	2;14	n	0.37	7	12.0	7	7;17	y	0.21	3	11.0	3	6;16	y	0.18	4	18.5	4	6;31	y	0.42	5	7.0	5	4;10	y	0.46	6	7.0	6	2;12	y	0.23	5	17.0	5	9;25	y	0.38	4	6.5	4	4;9	y	0.27	6	16.0	6	8;24	y	0.22	2	7.0	2	3;11	y	0.21	3	11.0	3	7;15	y	ENSMUSG00000072501.6	Phf20l1	chr15	protein_coding	PHD finger protein 20-like 1
known_NIR_6293	chr15	66469296	66475876	+	66469296;66469603	66469526;66475876	ES	ENSMUST00000230882.2	known	0.30	4	9.5	4	8;11	y	0.00	0	9.0	0	4;14	n	0.35	7	13.0	7	9;17	y	0.21	3	11.5	3	7;16	y	0.17	4	19.0	4	7;31	y	0.38	5	8.0	5	6;10	y	0.39	6	9.5	6	7;12	y	0.25	5	15.0	5	5;25	y	0.38	4	6.5	4	4;9	y	0.27	6	16.0	6	8;24	y	0.20	2	8.0	2	5;11	y	0.19	3	12.5	3	10;15	y	ENSMUSG00000072501.6	Phf20l1	chr15	protein_coding	PHD finger protein 20-like 1
known_NIR_6294	chr15	66476089	66476626	+	66476089	66476629	A3SS	ENSMUST00000230882.2	known	0.44	15	19	15	19	y	0.47	8	9	8	9	y	0.28	19	48	19	48	y	0.24	5	16	5	16	y	0.33	17	35	17	35	y	0.32	8	17	8	17	y	0.44	12	15	12	15	y	0.28	9	23	9	23	y	0.15	4	22	4	22	y	0.24	12	37	12	37	y	0.29	6	15	6	15	y	0.33	12	24	12	24	y	ENSMUSG00000072501.6	Phf20l1	chr15	protein_coding	PHD finger protein 20-like 1
known_NIR_6295	chr15	66494666	66495841	+	66494666;66495732	66495610;66495841	ES	ENSMUST00000229576.2	known	0.81	15	3.5	15	3;4	y	0.91	5	0.5	5	0;1	n	0.91	26	2.5	26	2;3	y	0.97	15	0.5	15	0;1	n	0.97	18	0.5	18	1;0	n	0.80	10	2.5	10	1;4	n	0.87	10	1.5	10	0;3	n	0.89	12	1.5	12	0;3	n	0.97	14	0.5	14	1;0	n	0.96	12	0.5	12	0;1	n	1.00	7	0.0	7	0;0	n	0.92	23	2.0	23	2;2	y	ENSMUSG00000072501.6	Phf20l1	chr15	protein_coding	PHD finger protein 20-like 1
known_NIR_6296	chr15	66502894	66504555	+	66502815	66504555	A5SS	ENSMUST00000229576.2	known	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	43	0	43	n	0.00	0	13	0	13	n	0.08	3	36	3	36	y	0.00	0	21	0	21	n	0.10	2	19	2	19	y	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.10	3	26	3	26	y	0.14	2	12	2	12	y	0.06	2	33	2	33	y	ENSMUSG00000072501.6	Phf20l1	chr15	protein_coding	PHD finger protein 20-like 1
known_NIR_6297	chr15	67000456	67000698	-	67000456	67024892	A5SS	ENSMUST00000229028.2	known	0.00	0	86	0	86	n	0.00	0	66	0	66	n	0.01	2	162	2	162	y	0.00	0	102	0	102	n	0.00	0	185	0	185	n	0.00	0	90	0	90	n	0.00	0	134	0	134	n	0.00	0	94	0	94	n	0.00	0	110	0	110	n	0.00	0	119	0	119	n	0.00	0	80	0	80	n	0.00	0	141	0	141	n	ENSMUSG00000013846.11	St3gal1	chr15	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 1
known_NIR_6298	chr15	67025019;67034900	67034836;67048481	-	67025019	67048481	cassetteExon	ENSMUST00000229028.2	known	0.34	32.0	63	41;23	63	y	0.19	11.5	50	12;11	50	y	0.27	46.0	122	58;34	122	y	0.38	39.0	63	48;30	63	y	0.29	48.0	118	49;47	118	y	0.31	26.5	59	28;25	59	y	0.22	27.0	96	29;25	96	y	0.16	15.5	84	23;8	84	y	0.26	29.5	84	32;27	84	y	0.31	37.0	83	39;35	83	y	0.28	17.5	45	23;12	45	y	0.26	33.5	95	42;25	95	y	ENSMUSG00000013846.11	St3gal1	chr15	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 1
known_NIR_6299	chr15	68867019	68885207	+	68867019	68896549	A3SS	ENSMUST00000230847.2	known	1.00	50	0	50	0	n	1.00	41	0	41	0	n	1.00	50	0	50	0	n	0.99	70	1	70	1	n	0.94	50	3	50	3	y	1.00	40	0	40	0	n	1.00	97	0	97	0	n	1.00	30	0	30	0	n	1.00	42	0	42	0	n	0.99	102	1	102	1	n	1.00	80	0	80	0	n	0.99	74	1	74	1	n	ENSMUSG00000022332.9	Khdrbs3	chr15	protein_coding	KH domain containing, RNA binding, signal transduction associated 3
known_NIR_6300	chr15	68889323	68896549	+	68867019	68896549	A5SS	ENSMUST00000230847.2	known	1.00	42	0	42	0	n	1.00	37	0	37	0	n	1.00	40	0	40	0	n	0.97	35	1	35	1	n	0.95	56	3	56	3	y	1.00	38	0	38	0	n	1.00	72	0	72	0	n	1.00	16	0	16	0	n	1.00	43	0	43	0	n	0.99	87	1	87	1	n	1.00	58	0	58	0	n	0.98	54	1	54	1	n	ENSMUSG00000022332.9	Khdrbs3	chr15	protein_coding	KH domain containing, RNA binding, signal transduction associated 3
known_NIR_6301	chr15	7170064	7183868	+	7159307	7183868	A5SS	ENSMUST00000067190.12	known	0.58	49	35	49	35	y	0.42	22	31	22	31	y	0.08	3	36	3	36	y	0.67	137	67	137	67	y	0.19	22	93	22	93	y	0.14	4	25	4	25	y	0.22	15	54	15	54	y	0.03	1	31	1	31	n	0.66	106	54	106	54	y	0.60	147	100	147	100	y	0.59	91	64	91	64	y	0.51	96	94	96	94	y	ENSMUSG00000054263.13	Lifr	chr15	protein_coding	LIF receptor alpha
known_NIR_6302	chr15	7214299	7214548	+	7214299	7215047	A3SS	ENSMUST00000067190.12	known	0.96	433	17	433	17	y	0.99	362	5	362	5	y	0.94	116	7	116	7	y	0.96	574	23	574	23	y	0.94	287	19	287	19	y	0.88	43	6	43	6	y	0.97	270	8	270	8	y	0.91	62	6	62	6	y	0.97	827	29	827	29	y	0.96	878	37	878	37	y	0.97	735	21	735	21	y	0.96	626	25	626	25	y	ENSMUSG00000054263.13	Lifr	chr15	protein_coding	LIF receptor alpha
known_NIR_6303	chr15	72724362	72775406	-	72629207	72775406	A3SS	ENSMUST00000023276.16	known	0.00	0	28	0	28	n	0.00	0	22	0	22	n	0.04	1	27	1	27	n	0.00	0	20	0	20	n	0.00	0	19	0	19	n	0.00	0	21	0	21	n	0.00	0	32	0	32	n	0.00	0	15	0	15	n	0.00	0	22	0	22	n	0.00	0	28	0	28	n	0.12	3	22	3	22	y	0.00	0	32	0	32	n	ENSMUSG00000047921.18	Trappc9	chr15	protein_coding	trafficking protein particle complex 9
known_NIR_6304	chr15	72903492	72922444	-	72903492;72914052	72914026;72922444	ES	ENSMUST00000023276.16	known	0.57	6	4.5	6	4;5	y	0.83	5	1.0	5	1;1	n	0.52	8	7.5	8	6;9	y	0.71	11	4.5	11	5;4	y	0.74	13	4.5	13	6;3	y	0.83	12	2.5	12	3;2	y	0.70	15	6.5	15	5;8	y	0.62	5	3.0	5	3;3	y	0.87	10	1.5	10	2;1	n	0.75	15	5.0	15	4;6	y	0.53	4	3.5	4	4;3	y	0.33	5	10.0	5	12;8	y	ENSMUSG00000047921.18	Trappc9	chr15	protein_coding	trafficking protein particle complex 9
known_NIR_6305	chr15	72924156	72929771	-	72924156	72927597	5pMXE	ENSMUST00000023276.16	known	1.00	11	0	11	0	n	1.00	5	0	5	0	n	1.00	11	0	11	0	n	1.00	12	0	12	0	n	1.00	22	0	22	0	n	1.00	16	0	16	0	n	0.83	19	4	19	4	y	1.00	7	0	7	0	n	1.00	10	0	10	0	n	1.00	11	0	11	0	n	1.00	12	0	12	0	n	1.00	6	0	6	0	n	ENSMUSG00000047921.18	Trappc9	chr15	protein_coding	trafficking protein particle complex 9
known_NIR_6306	chr15	73082746	73087828	-	73082746;73083844	73083836;73087828	ES	ENSMUST00000226988.3	known	0.23	5	17.0	5	16;18	y	0.19	4	17.5	4	17;18	y	0.28	11	28.5	11	29;28	y	0.09	2	19.5	2	19;20	y	0.28	9	23.5	9	21;26	y	0.19	2	8.5	2	8;9	y	0.24	6	18.5	6	17;20	y	0.24	5	15.5	5	16;15	y	0.11	3	23.5	3	22;25	y	0.26	7	20.0	7	20;20	y	0.10	2	19.0	2	19;19	y	0.11	3	24.0	3	22;26	y	ENSMUSG00000022607.19	Ptk2	chr15	protein_coding	PTK2 protein tyrosine kinase 2
known_NIR_6307	chr15	73146433;73147490	73147470;73148706	-	73146433	73148706	cassetteExon	ENSMUST00000226988.3	known	0.09	2.0	20	2;2	20	y	0.33	4.5	9	5;4	9	y	0.06	2.5	37	3;2	37	y	0.09	2.5	24	3;2	24	y	0.11	4.5	35	5;4	35	y	0.12	2.5	18	2;3	18	y	0.07	2.0	27	2;2	27	y	0.02	0.5	27	1;0	27	n	0.00	0.0	23	0;0	23	n	0.14	4.0	24	5;3	24	y	0.06	1.0	16	1;1	16	n	0.02	0.5	25	1;0	25	n	ENSMUSG00000022607.19	Ptk2	chr15	protein_coding	PTK2 protein tyrosine kinase 2
known_NIR_6308	chr15	73192264	73192624	-	73181718	73192624	A3SS	ENSMUST00000226988.3	known	0.00	0	15	0	15	n	0.00	0	11	0	11	n	0.00	0	22	0	22	n	0.06	1	16	1	16	n	0.04	1	22	1	22	n	0.00	0	14	0	14	n	0.00	0	29	0	29	n	0.00	0	16	0	16	n	0.00	0	21	0	21	n	0.00	0	41	0	41	n	0.00	0	12	0	12	n	0.07	2	25	2	25	y	ENSMUSG00000022607.19	Ptk2	chr15	protein_coding	PTK2 protein tyrosine kinase 2
known_NIR_6309	chr15	73215208	73236890	-	73215208	73294858	A5SS	ENSMUST00000226466.2	known	1.00	3	0	3	0	n	1.00	1	0	1	0	n	0.50	5	5	5	5	y	1.00	5	0	5	0	n	1.00	3	0	3	0	n	0.80	4	1	4	1	n	1.00	5	0	5	0	n	1.00	1	0	1	0	n	0.80	4	1	4	1	n	1.00	3	0	3	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000022607.19	Ptk2	chr15	protein_coding	PTK2 protein tyrosine kinase 2
known_NIR_6310	chr15	73215208	73263608	-	73215208	73294858	A5SS	ENSMUST00000226466.2	known	1.00	2	0	2	0	n	-	-	-	-	-	-	0.50	5	5	5	5	y	1.00	5	0	5	0	n	-	-	-	-	-	-	0.75	3	1	3	1	n	1.00	1	0	1	0	n	1.00	3	0	3	0	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000022607.19	Ptk2	chr15	protein_coding	PTK2 protein tyrosine kinase 2
known_NIR_6311	chr15	73215208	73266497	-	73215208;73232186	73231875;73266497	ES	ENSMUST00000226988.3	known	0.80	8	2.0	8	2;2	y	0.86	6	1.0	6	2;0	n	0.89	17	2.0	17	3;1	n	0.86	9	1.5	9	3;0	n	0.93	20	1.5	20	3;0	n	0.91	5	0.5	5	1;0	n	0.96	13	0.5	13	0;1	n	0.80	6	1.5	6	3;0	n	0.80	2	0.5	2	0;1	n	0.94	15	1.0	15	2;0	n	0.92	6	0.5	6	1;0	n	0.93	7	0.5	7	1;0	n	ENSMUSG00000022607.19	Ptk2	chr15	protein_coding	PTK2 protein tyrosine kinase 2
known_NIR_6312	chr15	73215208	73294858	-	73215208;73266593	73266497;73294858	ES	ENSMUST00000239146.2	known	0.00	0	8.5	0	8;9	n	0.00	0	4.0	0	6;2	n	0.21	5	19.0	5	17;21	y	0.00	0	7.5	0	9;6	n	0.00	0	16.5	0	20;13	n	0.11	1	8.5	1	5;12	n	0.00	0	10.5	0	13;8	n	0.00	0	4.5	0	6;3	n	0.33	1	2.0	1	2;2	n	0.00	0	14.0	0	15;13	n	0.00	0	5.5	0	6;5	n	0.00	0	10.0	0	7;13	n	ENSMUSG00000022607.19	Ptk2	chr15	protein_coding	PTK2 protein tyrosine kinase 2
known_NIR_6313	chr15	73215208	73294858	-	73266593	73294858	3pMXE	ENSMUST00000227435.2	known	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.19	5	21	5	21	y	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.08	1	12	1	12	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	ENSMUSG00000022607.19	Ptk2	chr15	protein_coding	PTK2 protein tyrosine kinase 2
known_NIR_6314	chr15	73215208;73237044	73236890;73266497	-	73215208	73266497	cassetteExon	ENSMUST00000239146.2	known	0.20	2.0	8	3;1	8	n	0.08	0.5	6	1;0	6	n	0.19	4.0	17	5;3	17	y	0.42	6.5	9	5;8	9	y	0.07	1.5	20	3;0	20	n	0.41	3.5	5	4;3	5	y	0.21	3.5	13	5;2	13	y	0.25	2.0	6	1;3	6	n	0.56	2.5	2	4;1	2	n	0.12	2.0	15	3;1	15	n	0.08	0.5	6	1;0	6	n	0.07	0.5	7	1;0	7	n	ENSMUSG00000022607.19	Ptk2	chr15	protein_coding	PTK2 protein tyrosine kinase 2
known_NIR_6315	chr15	73215208;73237044	73236890;73266497	-	73215208;73264296	73263608;73266497	MXE	ENSMUST00000228180.3	known	0.57	2.0	1.5	3;1	2;1	n	1.00	0.5	0.0	1;0	0;0	n	0.57	4.0	3.0	5;3	5;1	n	0.72	6.5	2.5	5;8	5;0	n	0.38	1.5	2.5	3;0	0;5	n	0.54	3.5	3.0	4;3	3;3	y	0.70	3.5	1.5	5;2	1;2	n	0.57	2.0	1.5	1;3	3;0	n	0.83	2.5	0.5	4;1	0;1	n	0.40	2.0	3.0	3;1	1;5	n	0.25	0.5	1.5	1;0	1;2	n	0.50	0.5	0.5	1;0	1;0	n	ENSMUSG00000022607.19	Ptk2	chr15	protein_coding	PTK2 protein tyrosine kinase 2
known_NIR_6316	chr15	73620314	73622978	+	73596697	73622978	A5SS	ENSMUST00000230177.2	known	0.25	1	3	1	3	n	-	-	-	-	-	-	0.29	4	10	4	10	y	0.00	0	5	0	5	n	0.73	8	3	8	3	y	0.00	0	2	0	2	n	0.89	58	7	58	7	y	0.17	1	5	1	5	n	0.50	4	4	4	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.67	2	1	2	1	n	ENSMUSG00000059895.14	Ptp4a3	chr15	protein_coding	protein tyrosine phosphatase 4a3
known_NIR_6317	chr15	74827566	74829626	+	74827566	74829264	A3SS&ES	ENSMUST00000191145.7	known	1.00	668	2	668	2	y	1.00	589	0	589	0	n	1.00	773	2	773	2	y	1.00	705	1	705	1	n	1.00	844	4	844	4	y	0.99	464	3	464	3	y	1.00	631	3	631	3	y	1.00	598	3	598	3	y	0.98	404	9	404	9	y	0.99	579	3	579	3	y	1.00	385	1	385	1	n	1.00	604	2	604	2	y	ENSMUSG00000022587.15	Ly6e	chr15	protein_coding	lymphocyte antigen 6 complex, locus E
known_NIR_6318	chr15	74827566	74829629	+	74827566	74829264	A3SS&ES	ENSMUST00000185863.7	known	0.99	337	2	337	2	y	1.00	275	0	275	0	n	0.99	241	2	241	2	y	1.00	321	1	321	1	n	0.99	341	4	341	4	y	0.98	176	3	176	3	y	0.99	279	3	279	3	y	0.99	218	3	218	3	y	0.96	216	9	216	9	y	0.99	230	3	230	3	y	0.99	171	1	171	1	n	0.99	282	2	282	2	y	ENSMUSG00000022587.15	Ly6e	chr15	protein_coding	lymphocyte antigen 6 complex, locus E
known_NIR_6319	chr15	74827566	74829629	+	74827566	74829626	A3SS	ENSMUST00000188866.7	known	0.34	337	668	337	668	y	0.32	275	589	275	589	y	0.24	241	773	241	773	y	0.31	321	705	321	705	y	0.29	341	844	341	844	y	0.28	176	464	176	464	y	0.31	279	631	279	631	y	0.27	218	598	218	598	y	0.35	216	404	216	404	y	0.28	230	579	230	579	y	0.31	171	385	171	385	y	0.32	282	604	282	604	y	ENSMUSG00000022587.15	Ly6e	chr15	protein_coding	lymphocyte antigen 6 complex, locus E
known_NIR_6320	chr15	74827566;74829312	74829264;74829626	+	74827566	74829626	cassetteExon	ENSMUST00000188866.7	known	0.01	5.5	668	2;9	668	y	0.00	1.5	589	0;3	589	n	0.01	8.5	773	2;15	773	y	0.01	6.0	705	1;11	705	n	0.01	9.0	844	4;14	844	y	0.01	6.0	464	3;9	464	y	0.01	6.0	631	3;9	631	y	0.01	6.0	598	3;9	598	y	0.03	10.5	404	9;12	404	y	0.01	3.5	579	3;4	579	y	0.00	0.5	385	1;0	385	n	0.01	5.0	604	2;8	604	y	ENSMUSG00000022587.15	Ly6e	chr15	protein_coding	lymphocyte antigen 6 complex, locus E
known_NIR_6321	chr15	74827566;74829312	74829264;74829629	+	74827566	74829629	cassetteExon	ENSMUST00000189186.7	known	0.01	3.0	337	2;4	337	y	0.00	0.0	275	0;0	275	n	0.00	1.0	241	2;0	241	n	0.00	0.5	321	1;0	321	n	0.01	2.0	341	4;0	341	n	0.02	3.0	176	3;3	176	y	0.01	1.5	279	3;0	279	n	0.01	3.0	218	3;3	218	y	0.02	4.5	216	9;0	216	n	0.01	3.0	230	3;3	230	y	0.01	2.5	171	1;4	171	n	0.01	2.0	282	2;2	282	y	ENSMUSG00000022587.15	Ly6e	chr15	protein_coding	lymphocyte antigen 6 complex, locus E
known_NIR_6322	chr15	74828562	74829626	+	74827566	74829626	A5SS	ENSMUST00000188866.7	known	0.00	3	668	3	668	y	0.00	2	589	2	589	y	0.01	8	773	8	773	y	0.00	2	705	2	705	y	0.00	3	844	3	844	y	0.02	9	464	9	464	y	0.01	7	631	7	631	y	0.01	4	598	4	598	y	0.00	1	404	1	404	n	0.01	4	579	4	579	y	0.01	2	385	2	385	y	0.00	3	604	3	604	y	ENSMUSG00000022587.15	Ly6e	chr15	protein_coding	lymphocyte antigen 6 complex, locus E
known_NIR_6323	chr15	74828562	74829626	+	74829312	74829626	A5SS&ES	ENSMUST00000185863.7	known	0.25	3	9	3	9	y	0.40	2	3	2	3	n	0.35	8	15	8	15	y	0.15	2	11	2	11	y	0.18	3	14	3	14	y	0.50	9	9	9	9	y	0.44	7	9	7	9	y	0.31	4	9	4	9	y	0.08	1	12	1	12	n	0.50	4	4	4	4	n	1.00	2	0	2	0	n	0.27	3	8	3	8	y	ENSMUSG00000022587.15	Ly6e	chr15	protein_coding	lymphocyte antigen 6 complex, locus E
known_NIR_6324	chr15	74829312	74829629	+	74829312	74829626	A3SS	ENSMUST00000185863.7	known	0.31	4	9	4	9	y	0.00	0	3	0	3	n	0.00	0	15	0	15	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.25	3	9	3	9	y	0.00	0	9	0	9	n	0.25	3	9	3	9	y	0.00	0	12	0	12	n	0.43	3	4	3	4	n	1.00	4	0	4	0	n	0.20	2	8	2	8	y	ENSMUSG00000022587.15	Ly6e	chr15	protein_coding	lymphocyte antigen 6 complex, locus E
known_NIR_6325	chr15	74869481	74869728	-	74869466	74869728	A3SS	ENSMUST00000187994.7	known	0.07	1	13	1	13	n	0.00	0	7	0	7	n	0.15	4	23	4	23	y	0.00	0	5	0	5	n	0.14	2	12	2	12	y	0.18	2	9	2	9	y	0.11	4	31	4	31	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.43	3	4	3	4	n	0.00	0	2	0	2	n	ENSMUSG00000075602.11	Ly6a	chr15	protein_coding	lymphocyte antigen 6 complex, locus A
known_NIR_6326	chr15	74920373	74920603	-	74920373	74920634	A5SS	ENSMUST00000188845.7	known	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.11	3	24	3	24	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	ENSMUSG00000079018.11	Ly6c1	chr15	protein_coding	lymphocyte antigen 6 complex, locus C1
known_NIR_6327	chr15	74920388	74920634	-	74920373	74920634	A3SS	ENSMUST00000188845.7	known	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.11	3	24	3	24	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000079018.11	Ly6c1	chr15	protein_coding	lymphocyte antigen 6 complex, locus C1
known_NIR_6328	chr15	75088292	75088533	+	75088261	75088533	A5SS	ENSMUST00000185307.7	known	0.30	48	114	48	114	y	0.29	38	94	38	94	y	0.38	37	61	37	61	y	0.23	37	125	37	125	y	0.27	61	169	61	169	y	0.27	18	49	18	49	y	0.27	59	162	59	162	y	0.35	36	67	36	67	y	0.29	52	126	52	126	y	0.22	45	161	45	161	y	0.32	59	125	59	125	y	0.26	50	142	50	142	y	ENSMUSG00000047728.14	Ly6g2	chr15	protein_coding	lymphocyte antigen 6 complex, locus G2
known_NIR_6329	chr15	75092639	75093487	+	75092689	75093487	A5SS	ENSMUST00000185307.7	known	0.65	356	190	356	190	y	0.65	359	193	359	193	y	0.66	169	86	169	86	y	0.67	391	189	391	189	y	0.67	622	304	622	304	y	0.60	107	70	107	70	y	0.71	580	240	580	240	y	0.62	163	100	163	100	y	0.65	350	192	350	192	y	0.65	474	250	474	250	y	0.64	409	230	409	230	y	0.69	480	220	480	220	y	ENSMUSG00000047728.14	Ly6g2	chr15	protein_coding	lymphocyte antigen 6 complex, locus G2
known_NIR_6330	chr15	75300027	75301767	-	75300027	75301799	A5SS	ENSMUST00000096397.3	known	0.40	14	21	14	21	y	0.26	9	25	9	25	y	0.00	0	3	0	3	n	0.23	5	17	5	17	y	0.41	15	22	15	22	y	-	-	-	-	-	-	0.20	2	8	2	8	y	-	-	-	-	-	-	0.33	13	27	13	27	y	0.21	6	22	6	22	y	0.35	14	26	14	26	y	0.40	2	3	2	3	n	ENSMUSG00000053168.7	9030619P08Rik	chr15	transcribed_unprocessed_pseudogene	RIKEN cDNA 9030619P08 gene
known_NIR_6331	chr15	75301872	75303216	-	75301877	75303216	A3SS	ENSMUST00000096397.3	known	0.17	5	25	5	25	y	0.00	0	32	0	32	n	0.00	0	5	0	5	n	0.10	3	26	3	26	y	0.00	0	26	0	26	n	-	-	-	-	-	-	0.00	0	14	0	14	n	-	-	-	-	-	-	0.16	7	36	7	36	y	0.10	3	28	3	28	y	0.00	0	39	0	39	n	0.00	0	5	0	5	n	ENSMUSG00000053168.7	9030619P08Rik	chr15	transcribed_unprocessed_pseudogene	RIKEN cDNA 9030619P08 gene
known_NIR_6332	chr15	75469478	75469579	+	75469478	75469940	A3SS	ENSMUST00000189944.7	known	0.96	44	2	44	2	y	0.79	49	13	49	13	y	0.94	101	6	101	6	y	0.97	36	1	36	1	n	0.93	124	10	124	10	y	1.00	52	0	52	0	n	0.92	104	9	104	9	y	0.94	46	3	46	3	y	0.93	40	3	40	3	y	0.94	79	5	79	5	y	1.00	53	0	53	0	n	0.97	66	2	66	2	y	ENSMUSG00000022579.11	Gpihbp1	chr15	protein_coding	GPI-anchored HDL-binding protein 1
known_NIR_6333	chr15	75469478	75469996	+	75469478	75469579	A3SS	ENSMUST00000023243.11	known	0.00	0	44	0	44	n	0.00	0	49	0	49	n	0.05	5	101	5	101	y	0.00	0	36	0	36	n	0.04	5	124	5	124	y	0.00	0	52	0	52	n	0.04	4	104	4	104	y	0.02	1	46	1	46	n	0.05	2	40	2	40	y	0.01	1	79	1	79	n	0.04	2	53	2	53	y	0.01	1	66	1	66	n	ENSMUSG00000022579.11	Gpihbp1	chr15	protein_coding	GPI-anchored HDL-binding protein 1
known_NIR_6334	chr15	75469478	75469996	+	75469478	75469940	A3SS	ENSMUST00000189944.7	known	0.00	0	2	0	2	n	0.00	0	13	0	13	n	0.45	5	6	5	6	y	0.00	0	1	0	1	n	0.33	5	10	5	10	y	-	-	-	-	-	-	0.31	4	9	4	9	y	0.25	1	3	1	3	n	0.40	2	3	2	3	n	0.17	1	5	1	5	n	1.00	2	0	2	0	n	0.33	1	2	1	2	n	ENSMUSG00000022579.11	Gpihbp1	chr15	protein_coding	GPI-anchored HDL-binding protein 1
known_NIR_6335	chr15	75538229	75539269	-	75538170	75539269	A3SS	ENSMUST00000000958.9	known	0.00	0	70	0	70	n	0.01	1	77	1	77	n	0.00	0	65	0	65	n	0.01	1	73	1	73	n	0.03	2	70	2	70	y	0.00	0	43	0	43	n	0.00	0	116	0	116	n	0.03	1	36	1	36	n	0.00	0	81	0	81	n	0.00	0	121	0	121	n	0.01	1	97	1	97	n	0.00	0	79	0	79	n	ENSMUSG00000000934.10	Top1mt	chr15	protein_coding	DNA topoisomerase 1, mitochondrial
known_NIR_6336	chr15	75734330	75735158	+	75734330	75735254	A3SS	ENSMUST00000023238.6	known	0.04	4	106	4	106	y	0.01	1	74	1	74	n	0.04	8	212	8	212	y	0.00	0	93	0	93	n	0.01	2	160	2	160	y	0.02	2	115	2	115	y	0.03	5	156	5	156	y	0.03	4	115	4	115	y	0.00	0	84	0	84	n	0.01	1	111	1	111	n	0.00	0	66	0	66	n	0.01	1	88	1	88	n	ENSMUSG00000022575.6	Gsdmd	chr15	protein_coding	gasdermin D
known_NIR_6337	chr15	75735477	75736204	+	75735477	75736093	A3SS	ENSMUST00000023238.6	known	0.04	4	92	4	92	y	0.02	2	83	2	83	y	0.04	10	218	10	218	y	0.00	0	69	0	69	n	0.02	2	131	2	131	y	0.03	3	105	3	105	y	0.05	5	91	5	91	y	0.10	11	104	11	104	y	0.06	4	64	4	64	y	0.03	3	93	3	93	y	0.01	1	84	1	84	n	0.00	0	71	0	71	n	ENSMUSG00000022575.6	Gsdmd	chr15	protein_coding	gasdermin D
known_NIR_6338	chr15	75763713	75764191	-	75763713	75763812	A5SS	ENSMUST00000230259.2	known	0.00	0	689	0	689	n	0.00	3	758	3	758	y	0.00	0	363	0	363	n	0.00	0	629	0	629	n	0.00	0	775	0	775	n	0.00	1	243	1	243	n	0.00	1	779	1	779	n	0.00	0	327	0	327	n	0.00	0	526	0	526	n	0.00	0	810	0	810	n	0.00	0	654	0	654	n	0.00	0	625	0	625	n	ENSMUSG00000022574.8	Naprt	chr15	protein_coding	nicotinate phosphoribosyltransferase
known_NIR_6339	chr15	75763713	75764191	-	75763713;75763896	75763812;75764191	ES	ENSMUST00000023237.8	known	0.00	0	689.5	0	689;690	n	0.00	3	764.0	3	758;770	y	0.00	0	380.0	0	363;397	n	0.00	0	668.0	0	629;707	n	0.00	0	765.0	0	775;755	n	0.00	1	255.0	1	243;267	n	0.00	1	821.5	1	779;864	n	0.00	0	325.0	0	327;323	n	0.00	0	543.5	0	526;561	n	0.00	0	829.0	0	810;848	n	0.00	0	684.5	0	654;715	n	0.00	0	637.0	0	625;649	n	ENSMUSG00000022574.8	Naprt	chr15	protein_coding	nicotinate phosphoribosyltransferase
known_NIR_6340	chr15	75768313;75768768	75768489;75772981	-	75768313	75772981	cassetteExon	ENSMUST00000151066.8	known	1.00	314.0	0	505;123	0	n	1.00	376.5	0	620;133	0	n	1.00	371.0	0	576;166	0	n	1.00	292.5	0	473;112	0	n	1.00	336.5	1	548;125	1	n	1.00	186.0	0	285;87	0	n	0.99	380.0	3	628;132	3	y	1.00	198.5	0	335;62	0	n	1.00	261.0	0	436;86	0	n	1.00	372.0	0	634;110	0	n	1.00	365.0	0	609;121	0	n	1.00	371.0	0	614;128	0	n	ENSMUSG00000055762.17	Eef1d	chr15	protein_coding	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
known_NIR_6341	chr15	75768768	75772981	-	75768768;75772611	75772540;75772981	ES	ENSMUST00000154584.9	known	0.31	123	275.0	123	244;306	y	0.31	133	299.5	133	302;297	y	0.36	166	297.5	166	288;307	y	0.30	112	264.0	112	253;275	y	0.27	125	335.5	125	332;339	y	0.34	87	168.5	87	164;173	y	0.27	132	362.5	132	358;367	y	0.26	62	172.0	62	177;167	y	0.27	86	236.0	86	240;232	y	0.25	110	330.5	110	303;358	y	0.28	121	305.0	121	297;313	y	0.28	128	329.5	128	321;338	y	ENSMUSG00000055762.17	Eef1d	chr15	protein_coding	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
known_NIR_6342	chr15	75768768	75772981	-	75772611	75772981	3pMXE	ENSMUST00000055220.7	known	0.29	123	306	123	306	y	0.31	133	297	133	297	y	0.35	166	307	166	307	y	0.29	112	275	112	275	y	0.27	125	339	125	339	y	0.33	87	173	87	173	y	0.26	132	367	132	367	y	0.27	62	167	62	167	y	0.27	86	232	86	232	y	0.24	110	358	110	358	y	0.28	121	313	121	313	y	0.27	128	338	128	338	y	ENSMUSG00000055762.17	Eef1d	chr15	protein_coding	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
known_NIR_6343	chr15	75768768;75769131	75769075;75772540	-	75768768	75772540	cassetteExon	ENSMUST00000154584.9	known	0.02	5.0	244	3;7	244	y	0.02	6.0	302	7;5	302	y	0.04	11.0	288	8;14	288	y	0.02	5.0	253	6;4	253	y	0.01	4.5	332	3;6	332	y	0.03	5.0	164	5;5	164	y	0.02	8.5	358	8;9	358	y	0.04	6.5	177	6;7	177	y	0.03	7.0	240	8;6	240	y	0.02	6.0	303	6;6	303	y	0.01	4.5	297	5;4	297	y	0.02	5.5	321	6;5	321	y	ENSMUSG00000055762.17	Eef1d	chr15	protein_coding	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
known_NIR_6344	chr15	75768768;75769131	75769075;75772981	-	75768768	75772981	cassetteExon	ENSMUST00000109972.9	known	0.02	2.5	123	3;2	123	y	0.03	4.5	133	7;2	133	y	0.02	4.0	166	8;0	166	n	0.04	4.5	112	6;3	112	y	0.02	2.5	125	3;2	125	y	0.04	4.0	87	5;3	87	y	0.03	4.5	132	8;1	132	n	0.07	4.5	62	6;3	62	y	0.05	5.0	86	8;2	86	y	0.04	4.5	110	6;3	110	y	0.03	3.5	121	5;2	121	y	0.03	3.5	128	6;1	128	n	ENSMUSG00000055762.17	Eef1d	chr15	protein_coding	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
known_NIR_6345	chr15	75768768;75769131	75769075;75772981	-	75768768;75772611	75772540;75772981	MXE	ENSMUST00000154584.9	known	0.01	2.5	275.0	3;2	244;306	y	0.01	4.5	299.5	7;2	302;297	y	0.01	4.0	297.5	8;0	288;307	n	0.02	4.5	264.0	6;3	253;275	y	0.01	2.5	335.5	3;2	332;339	y	0.02	4.0	168.5	5;3	164;173	y	0.01	4.5	362.5	8;1	358;367	n	0.03	4.5	172.0	6;3	177;167	y	0.02	5.0	236.0	8;2	240;232	y	0.01	4.5	330.5	6;3	303;358	y	0.01	3.5	305.0	5;2	297;313	y	0.01	3.5	329.5	6;1	321;338	n	ENSMUSG00000055762.17	Eef1d	chr15	protein_coding	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
known_NIR_6346	chr15	75769131	75772981	-	75772611	75772981	3pMXE	ENSMUST00000055220.7	known	0.01	2	306	2	306	y	0.01	2	297	2	297	y	0.00	0	307	0	307	n	0.01	3	275	3	275	y	0.01	2	339	2	339	y	0.02	3	173	3	173	y	0.00	1	367	1	367	n	0.02	3	167	3	167	y	0.01	2	232	2	232	y	0.01	3	358	3	358	y	0.01	2	313	2	313	y	0.00	1	338	1	338	n	ENSMUSG00000055762.17	Eef1d	chr15	protein_coding	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
known_NIR_6347	chr15	75769131;75772611	75772540;75772981	-	75769131	75772981	cassetteExon	ENSMUST00000089680.10	known	0.99	156.5	2	7;306	2	y	0.99	151.0	2	5;297	2	y	1.00	160.5	0	14;307	0	n	0.98	139.5	3	4;275	3	y	0.99	172.5	2	6;339	2	y	0.97	89.0	3	5;173	3	y	0.99	188.0	1	9;367	1	n	0.97	87.0	3	7;167	3	y	0.98	119.0	2	6;232	2	y	0.98	182.0	3	6;358	3	y	0.99	158.5	2	4;313	2	y	0.99	171.5	1	5;338	1	n	ENSMUSG00000055762.17	Eef1d	chr15	protein_coding	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
known_NIR_6348	chr15	75772611	75772981	-	75768313	75772981	A3SS	ENSMUST00000151066.8	known	1.00	306	0	306	0	n	1.00	297	0	297	0	n	1.00	307	0	307	0	n	1.00	275	0	275	0	n	1.00	339	1	339	1	n	1.00	173	0	173	0	n	0.99	367	3	367	3	y	1.00	167	0	167	0	n	1.00	232	0	232	0	n	1.00	358	0	358	0	n	1.00	313	0	313	0	n	1.00	338	0	338	0	n	ENSMUSG00000055762.17	Eef1d	chr15	protein_coding	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
known_NIR_6349	chr15	75773101	75781094	-	75773104	75781094	A3SS	ENSMUST00000154584.9	known	0.06	14	234	14	234	y	0.08	18	208	18	208	y	0.05	14	275	14	275	y	0.07	19	253	19	253	y	0.07	21	283	21	283	y	0.09	14	143	14	143	y	0.08	28	314	28	314	y	0.08	13	141	13	141	y	0.06	14	202	14	202	y	0.09	25	245	25	245	y	0.08	19	229	19	229	y	0.11	32	269	32	269	y	ENSMUSG00000055762.17	Eef1d	chr15	protein_coding	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
known_NIR_6350	chr15	75773104	75774528	-	75773104	75781094	A5SS	ENSMUST00000154584.9	known	0.00	0	234	0	234	n	0.00	1	208	1	208	n	0.00	1	275	1	275	n	0.00	0	253	0	253	n	0.00	0	283	0	283	n	0.00	0	143	0	143	n	0.01	2	314	2	314	y	0.01	1	141	1	141	n	0.00	0	202	0	202	n	0.00	0	245	0	245	n	0.00	0	229	0	229	n	0.00	0	269	0	269	n	ENSMUSG00000055762.17	Eef1d	chr15	protein_coding	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
known_NIR_6351	chr15	75773104	75781309	-	75773104	75781094	5pMXE	ENSMUST00000154584.9	known	0.03	7	234	7	234	y	0.02	4	208	4	208	y	0.00	0	275	0	275	n	0.02	5	253	5	253	y	0.01	4	283	4	283	y	0.00	0	143	0	143	n	0.02	5	314	5	314	y	0.02	3	141	3	141	y	0.03	6	202	6	202	y	0.03	7	245	7	245	y	0.02	5	229	5	229	y	0.03	7	269	7	269	y	ENSMUSG00000055762.17	Eef1d	chr15	protein_coding	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
known_NIR_6352	chr15	75775657	75781094	-	75773101	75781094	A3SS	ENSMUST00000116440.9	known	0.00	0	14	0	14	n	0.00	0	18	0	18	n	0.12	2	14	2	14	y	0.05	1	19	1	19	n	0.00	0	21	0	21	n	0.00	0	14	0	14	n	0.00	0	28	0	28	n	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.00	0	25	0	25	n	0.00	0	19	0	19	n	0.00	0	32	0	32	n	ENSMUSG00000055762.17	Eef1d	chr15	protein_coding	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
known_NIR_6353	chr15	75775657	75781094	-	75773104	75781094	A3SS	ENSMUST00000154584.9	known	0.00	0	234	0	234	n	0.00	0	208	0	208	n	0.01	2	275	2	275	y	0.00	1	253	1	253	n	0.00	0	283	0	283	n	0.00	0	143	0	143	n	0.00	0	314	0	314	n	0.00	0	141	0	141	n	0.00	0	202	0	202	n	0.00	0	245	0	245	n	0.00	0	229	0	229	n	0.00	0	269	0	269	n	ENSMUSG00000055762.17	Eef1d	chr15	protein_coding	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
known_NIR_6354	chr15	75798042	75798139	-	75798042	75798173	A5SS	ENSMUST00000230610.2	known	0.07	9	111	9	111	y	0.02	2	126	2	126	y	0.03	4	128	4	128	y	0.05	5	95	5	95	y	0.07	10	130	10	130	y	0.02	2	94	2	94	y	0.05	7	129	7	129	y	0.10	7	62	7	62	y	0.03	3	88	3	88	y	0.02	3	138	3	138	y	0.02	2	83	2	83	y	0.09	12	123	12	123	y	ENSMUSG00000022570.8	Gfus	chr15	protein_coding	GDP-L-fucose synthase
known_NIR_6355	chr15	75798306	75798592	-	75798306	75798648	A5SS	ENSMUST00000230610.2	known	0.03	3	102	3	102	y	0.02	2	84	2	84	y	0.03	4	144	4	144	y	0.04	5	118	5	118	y	0.06	9	152	9	152	y	0.01	1	88	1	88	n	0.05	8	142	8	142	y	0.05	4	76	4	76	y	0.04	3	72	3	72	y	0.02	3	162	3	162	y	0.02	2	112	2	112	y	0.06	8	136	8	136	y	ENSMUSG00000022570.8	Gfus	chr15	protein_coding	GDP-L-fucose synthase
known_NIR_6356	chr15	75798944	75800741	-	75798944;75800392	75800278;75800741	ES	ENSMUST00000229951.2	known	0.01	1	72.0	1	76;68	n	0.06	4	58.0	4	67;49	y	0.00	0	89.5	0	81;98	n	0.00	0	65.5	0	73;58	n	0.01	1	89.0	1	97;81	n	0.00	0	63.5	0	73;54	n	0.00	0	95.0	0	104;86	n	0.00	0	56.0	0	60;52	n	0.02	1	61.0	1	79;43	n	0.00	0	102.0	0	98;106	n	0.00	0	84.5	0	92;77	n	0.03	3	98.0	3	109;87	y	ENSMUSG00000022570.8	Gfus	chr15	protein_coding	GDP-L-fucose synthase
known_NIR_6357	chr15	75798944	75800741	-	75800392	75800741	A3SS&ES	ENSMUST00000230610.2	known	0.01	1	68	1	68	n	0.08	4	49	4	49	y	0.00	0	98	0	98	n	0.00	0	58	0	58	n	0.01	1	81	1	81	n	0.00	0	54	0	54	n	0.00	0	86	0	86	n	0.00	0	52	0	52	n	0.02	1	43	1	43	n	0.00	0	106	0	106	n	0.00	0	77	0	77	n	0.03	3	87	3	87	y	ENSMUSG00000022570.8	Gfus	chr15	protein_coding	GDP-L-fucose synthase
known_NIR_6358	chr15	75800361	75800741	-	75800392	75800741	A3SS	ENSMUST00000230610.2	known	0.00	0	68	0	68	n	0.00	0	49	0	49	n	0.00	0	98	0	98	n	0.02	1	58	1	58	n	0.01	1	81	1	81	n	0.00	0	54	0	54	n	0.00	0	86	0	86	n	0.00	0	52	0	52	n	0.04	2	43	2	43	y	0.02	2	106	2	106	y	0.00	0	77	0	77	n	0.00	0	87	0	87	n	ENSMUSG00000022570.8	Gfus	chr15	protein_coding	GDP-L-fucose synthase
known_NIR_6359	chr15	75800898	75801568	-	75800898	75801502	A5SS	ENSMUST00000229951.2	known	0.51	25	24	25	24	y	0.67	33	16	33	16	y	0.46	45	52	45	52	y	0.42	30	41	30	41	y	0.50	53	52	53	52	y	0.40	21	31	21	31	y	0.47	35	39	35	39	y	0.47	27	31	27	31	y	0.47	26	29	26	29	y	0.50	47	47	47	47	y	0.50	38	38	38	38	y	0.64	41	23	41	23	y	ENSMUSG00000022570.8	Gfus	chr15	protein_coding	GDP-L-fucose synthase
known_NIR_6360	chr15	75841253	75844901	+	75841253	75844931	A3SS	ENSMUST00000109966.8	known	0.00	0	48	0	48	n	0.00	0	24	0	24	n	0.00	0	33	0	33	n	0.00	0	45	0	45	n	0.04	3	67	3	67	y	0.00	0	32	0	32	n	0.00	0	49	0	49	n	0.00	0	27	0	27	n	0.00	0	49	0	49	n	0.01	1	79	1	79	n	0.00	0	82	0	82	n	0.00	0	77	0	77	n	ENSMUSG00000034429.16	Zfp707	chr15	protein_coding	zinc finger protein 707
known_NIR_6361	chr15	75841253	75844901	+	75841253	75844972	A3SS	ENSMUST00000109967.10	known	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.21	3	11	3	11	y	0.00	0	6	0	6	n	0.00	0	17	0	17	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.05	1	19	1	19	n	0.00	0	12	0	12	n	0.00	0	11	0	11	n	ENSMUSG00000034429.16	Zfp707	chr15	protein_coding	zinc finger protein 707
known_NIR_6362	chr15	75841253	75844972	+	75841253	75844931	A3SS	ENSMUST00000109966.8	known	0.20	12	48	12	48	y	0.23	7	24	7	24	y	0.17	7	33	7	33	y	0.24	14	45	14	45	y	0.14	11	67	11	67	y	0.16	6	32	6	32	y	0.26	17	49	17	49	y	0.29	11	27	11	27	y	0.25	16	49	16	49	y	0.19	19	79	19	79	y	0.13	12	82	12	82	y	0.12	11	77	11	77	y	ENSMUSG00000034429.16	Zfp707	chr15	protein_coding	zinc finger protein 707
known_NIR_6363	chr15	75841583	75844931	+	75841253	75844931	A5SS	ENSMUST00000109966.8	known	0.02	1	48	1	48	n	0.11	3	24	3	24	y	0.00	0	33	0	33	n	0.10	5	45	5	45	y	0.04	3	67	3	67	y	0.03	1	32	1	32	n	0.02	1	49	1	49	n	0.04	1	27	1	27	n	0.09	5	49	5	49	y	0.01	1	79	1	79	n	0.04	3	82	3	82	y	0.05	4	77	4	77	y	ENSMUSG00000034429.16	Zfp707	chr15	protein_coding	zinc finger protein 707
known_NIR_6364	chr15	75867173	75867676	+	75867173	75867635	3pMXE	ENSMUST00000161961.2	known	0.77	10	3	10	3	y	0.85	11	2	11	2	y	0.75	3	1	3	1	n	0.68	15	7	15	7	y	0.70	14	6	14	6	y	0.00	0	3	0	3	n	0.53	10	9	10	9	y	0.67	6	3	6	3	n	0.71	10	4	10	4	y	0.48	10	11	10	11	y	0.62	18	11	18	11	y	0.59	23	16	23	16	y	ENSMUSG00000063704.14	Mapk15	chr15	protein_coding	mitogen-activated protein kinase 15
known_NIR_6365	chr15	75870108	75870220	+	75870112	75870220	A5SS	ENSMUST00000089669.6	known	0.07	1	13	1	13	n	0.00	0	17	0	17	n	0.40	2	3	2	3	n	0.18	3	14	3	14	y	0.19	3	13	3	13	y	0.00	0	2	0	2	n	0.29	5	12	5	12	y	0.00	0	4	0	4	n	0.15	4	22	4	22	y	0.14	6	36	6	36	y	0.00	0	30	0	30	n	0.19	6	26	6	26	y	ENSMUSG00000063704.14	Mapk15	chr15	protein_coding	mitogen-activated protein kinase 15
known_NIR_6366	chr15	75870527	75870610	+	75870527	75870628	A3SS	ENSMUST00000089669.6	known	0.09	1	10	1	10	n	0.07	1	14	1	14	n	0.00	0	2	0	2	n	0.17	2	10	2	10	y	0.14	1	6	1	6	n	1.00	1	0	1	0	n	0.25	4	12	4	12	y	0.00	0	2	0	2	n	0.18	3	14	3	14	y	0.20	5	20	5	20	y	0.07	2	25	2	25	y	0.12	2	15	2	15	y	ENSMUSG00000063704.14	Mapk15	chr15	protein_coding	mitogen-activated protein kinase 15
known_NIR_6367	chr15	75919521	75919964	-	75919521	75919771	A5SS	ENSMUST00000231218.2	known	1.00	36	0	36	0	n	0.97	58	2	58	2	y	1.00	62	0	62	0	n	1.00	27	0	27	0	n	1.00	39	0	39	0	n	0.86	18	3	18	3	y	0.95	52	3	52	3	y	1.00	24	0	24	0	n	0.97	28	1	28	1	n	1.00	37	0	37	0	n	1.00	43	0	43	0	n	0.97	38	1	38	1	n	ENSMUSG00000022568.18	Scrib	chr15	protein_coding	scribbled planar cell polarity
known_NIR_6368	chr15	75919521;75919845	75919771;75919964	-	75919521	75919964	cassetteExon	ENSMUST00000136390.8	known	0.00	0.0	36	0;0	36	n	0.06	4.0	58	2;6	58	y	0.00	0.0	62	0;0	62	n	0.02	0.5	27	0;1	27	n	0.00	0.0	39	0;0	39	n	0.10	2.0	18	3;1	18	n	0.03	1.5	52	3;0	52	n	0.02	0.5	24	0;1	24	n	0.03	1.0	28	1;1	28	n	0.00	0.0	37	0;0	37	n	0.01	0.5	43	0;1	43	n	0.03	1.0	38	1;1	38	n	ENSMUSG00000022568.18	Scrib	chr15	protein_coding	scribbled planar cell polarity
known_NIR_6369	chr15	75920920	75921052	-	75920942	75921052	A3SS	ENSMUST00000136390.8	known	0.15	5	29	5	29	y	0.09	6	60	6	60	y	0.00	0	70	0	70	n	0.12	3	23	3	23	y	0.00	0	61	0	61	n	0.16	5	26	5	26	y	0.07	4	57	4	57	y	0.00	0	29	0	29	n	0.00	0	38	0	38	n	0.00	0	43	0	43	n	0.00	0	31	0	31	n	0.00	0	42	0	42	n	ENSMUSG00000022568.18	Scrib	chr15	protein_coding	scribbled planar cell polarity
known_NIR_6370	chr15	75921150	75921899	-	75921150;75921389	75921306;75921899	ES	ENSMUST00000136390.8	known	0.83	30	6.0	30	5;7	y	0.84	44	8.5	44	10;7	y	0.87	55	8.5	55	10;7	y	0.90	35	4.0	35	5;3	y	0.89	55	6.5	55	6;7	y	0.67	21	10.5	21	13;8	y	0.74	28	10.0	28	9;11	y	0.87	27	4.0	27	6;2	y	0.91	30	3.0	30	2;4	y	0.85	38	6.5	38	10;3	y	0.93	33	2.5	33	4;1	n	0.85	39	7.0	39	5;9	y	ENSMUSG00000022568.18	Scrib	chr15	protein_coding	scribbled planar cell polarity
known_NIR_6371	chr15	75933072;75933650	75933588;75934519	-	75933072	75934519	cassetteExon	ENSMUST00000136390.8	known	0.95	21.0	1	20;22	1	n	1.00	16.0	0	16;16	0	n	0.84	32.0	6	29;35	6	y	0.82	14.0	3	13;15	3	y	0.93	37.0	3	37;37	3	y	1.00	11.0	0	12;10	0	n	0.95	19.5	1	25;14	1	n	1.00	9.0	0	9;9	0	n	0.84	15.5	3	12;19	3	y	1.00	24.5	0	23;26	0	n	1.00	16.5	0	15;18	0	n	1.00	19.5	0	19;20	0	n	ENSMUSG00000022568.18	Scrib	chr15	protein_coding	scribbled planar cell polarity
known_NIR_6372	chr15	75944417	75947391	-	75944417;75946506	75946456;75947391	ES	ENSMUST00000100527.13	known	0.75	66	22.0	66	16;28	y	0.75	58	19.5	58	13;26	y	0.62	93	57.5	93	44;71	y	0.72	71	27.0	71	19;35	y	0.79	126	33.0	126	26;40	y	0.63	48	28.5	48	25;32	y	0.73	90	32.5	90	27;38	y	0.62	38	23.5	38	22;25	y	0.71	52	21.0	52	12;30	y	0.75	94	31.5	94	24;39	y	0.72	78	31.0	78	23;39	y	0.73	79	29.0	79	28;30	y	ENSMUSG00000002524.18	Puf60	chr15	protein_coding	poly-U binding splicing factor 60
known_NIR_6373	chr15	75944417	75947391	-	75946506	75947391	3pMXE	ENSMUST00000230968.2	known	0.70	66	28	66	28	y	0.69	58	26	58	26	y	0.57	93	71	93	71	y	0.67	71	35	71	35	y	0.76	126	40	126	40	y	0.60	48	32	48	32	y	0.70	90	38	90	38	y	0.60	38	25	38	25	y	0.63	52	30	52	30	y	0.71	94	39	94	39	y	0.67	78	39	78	39	y	0.72	79	30	79	30	y	ENSMUSG00000002524.18	Puf60	chr15	protein_coding	poly-U binding splicing factor 60
known_NIR_6374	chr15	75949551	75952699	-	75949551	75951076	5pMXE	ENSMUST00000229496.2	known	1.00	40	0	40	0	n	1.00	43	0	43	0	n	1.00	100	0	100	0	n	0.99	66	1	66	1	n	1.00	60	0	60	0	n	1.00	39	0	39	0	n	1.00	62	0	62	0	n	1.00	36	0	36	0	n	0.95	38	2	38	2	y	1.00	51	0	51	0	n	0.97	34	1	34	1	n	1.00	55	0	55	0	n	ENSMUSG00000002524.18	Puf60	chr15	protein_coding	poly-U binding splicing factor 60
known_NIR_6375	chr15	75949551;75951338	75951219;75952699	-	75949551	75952699	cassetteExon	ENSMUST00000100527.13	known	0.05	2.0	40	2;2	40	y	0.05	2.5	43	5;0	43	n	0.02	2.5	100	5;0	100	n	0.01	1.0	66	2;0	66	n	0.01	0.5	60	1;0	60	n	0.04	1.5	39	3;0	39	n	0.03	2.0	62	4;0	62	n	0.00	0.0	36	0;0	36	n	0.00	0.0	38	0;0	38	n	0.04	2.0	51	4;0	51	n	0.00	0.0	34	0;0	34	n	0.04	2.5	55	4;1	55	n	ENSMUSG00000002524.18	Puf60	chr15	protein_coding	poly-U binding splicing factor 60
known_NIR_6376	chr15	75962779	75963079	-	75962779	75963220	A5SS	ENSMUST00000227605.2	known	0.00	0	145	0	145	n	0.00	0	130	0	130	n	0.01	2	214	2	214	y	0.00	0	122	0	122	n	0.00	1	217	1	217	n	0.01	1	147	1	147	n	0.00	0	189	0	189	n	0.00	0	179	0	179	n	0.00	0	99	0	99	n	0.01	2	143	2	143	y	0.00	0	72	0	72	n	0.00	0	138	0	138	n	ENSMUSG00000075590.5	Nrbp2	chr15	protein_coding	nuclear receptor binding protein 2
known_NIR_6377	chr15	76004883	76005070	-	76004886	76005070	A3SS	ENSMUST00000146157.8	known	0.81	26	6	26	6	y	0.95	18	1	18	1	n	0.75	12	4	12	4	y	0.90	19	2	19	2	y	0.89	31	4	31	4	y	0.82	9	2	9	2	y	0.93	26	2	26	2	y	0.84	16	3	16	3	y	0.81	25	6	25	6	y	1.00	45	0	45	0	n	0.87	34	5	34	5	y	0.88	30	4	30	4	y	ENSMUSG00000044361.17	BC024139	chr15	protein_coding	cDNA sequence BC024139
known_NIR_6378	chr15	76062585	76062719	-	76062585	76067110	A5SS	ENSMUST00000165210.8	known	0.68	13	6	13	6	y	0.77	17	5	17	5	y	0.86	60	10	60	10	y	0.55	18	15	18	15	y	0.58	30	22	30	22	y	0.70	28	12	28	12	y	0.76	34	11	34	11	y	0.73	24	9	24	9	y	0.56	14	11	14	11	y	0.74	29	10	29	10	y	0.62	18	11	18	11	y	0.76	28	9	28	9	y	ENSMUSG00000022565.16	Plec	chr15	protein_coding	plectin
known_NIR_6379	chr15	76062585	76067110	-	76062585;76066099	76062719;76067110	ES	ENSMUST00000054449.14	known	0.41	6	8.5	6	13;4	y	0.31	5	11.0	5	17;5	y	0.20	10	39.5	10	60;19	y	0.45	15	18.0	15	18;18	y	0.48	22	23.5	22	30;17	y	0.46	12	14.0	12	28;0	n	0.31	11	24.5	11	34;15	y	0.35	9	16.5	9	24;9	y	0.48	11	12.0	11	14;10	y	0.30	10	23.0	10	29;17	y	0.54	11	9.5	11	18;1	n	0.30	9	21.5	9	28;15	y	ENSMUSG00000022565.16	Plec	chr15	protein_coding	plectin
known_NIR_6380	chr15	76066099	76067110	-	76062585	76067110	A3SS	ENSMUST00000165210.8	known	0.40	4	6	4	6	y	0.50	5	5	5	5	y	0.66	19	10	19	10	y	0.55	18	15	18	15	y	0.44	17	22	17	22	y	0.00	0	12	0	12	n	0.58	15	11	15	11	y	0.50	9	9	9	9	y	0.48	10	11	10	11	y	0.63	17	10	17	10	y	0.08	1	11	1	11	n	0.62	15	9	15	9	y	ENSMUSG00000022565.16	Plec	chr15	protein_coding	plectin
known_NIR_6381	chr15	76078630	76078951	-	76078630;76078773	76078759;76078951	ES	ENSMUST00000054449.14	known	1.00	16	0.0	16	0;0	n	1.00	5	0.0	5	0;0	n	1.00	61	0.0	61	0;0	n	1.00	10	0.0	10	0;0	n	0.97	34	1.0	34	1;1	n	1.00	14	0.0	14	0;0	n	0.67	15	7.5	15	8;7	y	1.00	23	0.0	23	0;0	n	1.00	15	0.0	15	0;0	n	1.00	17	0.0	17	0;0	n	1.00	12	0.0	12	0;0	n	1.00	19	0.0	19	0;0	n	ENSMUSG00000022565.16	Plec	chr15	protein_coding	plectin
known_NIR_6382	chr15	76079012	76082180	-	76079012	76113558	A5SS	ENSMUST00000074834.12	known	0.00	0	9	0	9	n	0.33	1	2	1	2	n	0.00	0	45	0	45	n	0.29	4	10	4	10	y	0.03	1	33	1	33	n	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.00	0	19	0	19	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	17	0	17	n	ENSMUSG00000022565.16	Plec	chr15	protein_coding	plectin
known_NIR_6383	chr15	76079012	76084669	-	76079012	76113558	A5SS	ENSMUST00000074834.12	known	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	45	0	45	n	0.00	0	10	0	10	n	0.00	0	33	0	33	n	0.00	0	16	0	16	n	0.13	2	13	2	13	y	0.00	0	19	0	19	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	17	0	17	n	ENSMUSG00000022565.16	Plec	chr15	protein_coding	plectin
known_NIR_6384	chr15	76079012	76113558	-	76079012	76093165	5pMXE	ENSMUST00000071869.12	known	1.00	9	0	9	0	n	1.00	2	0	2	0	n	1.00	45	0	45	0	n	1.00	10	0	10	0	n	1.00	33	0	33	0	n	1.00	16	0	16	0	n	1.00	13	0	13	0	n	1.00	19	0	19	0	n	0.89	8	1	8	1	n	0.73	8	3	8	3	y	1.00	9	0	9	0	n	0.94	17	1	17	1	n	ENSMUSG00000022565.16	Plec	chr15	protein_coding	plectin
known_NIR_6385	chr15	76118072	76118334	-	76118072	76124249	A5SS	ENSMUST00000165738.8	known	0.12	8	59	8	59	y	0.17	12	60	12	60	y	0.06	4	59	4	59	y	0.05	3	61	3	61	y	0.10	7	66	7	66	y	0.03	1	35	1	35	n	0.08	5	55	5	55	y	0.03	1	37	1	37	n	0.15	7	39	7	39	y	0.10	9	78	9	78	y	0.07	3	42	3	42	y	0.07	5	65	5	65	y	ENSMUSG00000063268.13	Parp10	chr15	protein_coding	poly (ADP-ribose) polymerase family, member 10
known_NIR_6386	chr15	76125181	76125356	-	76125131	76125356	A3SS	ENSMUST00000165738.8	known	0.00	0	64	0	64	n	0.03	2	59	2	59	y	0.02	2	81	2	81	y	0.00	0	44	0	44	n	0.00	0	65	0	65	n	0.04	2	43	2	43	y	0.00	0	51	0	51	n	0.00	0	34	0	34	n	0.00	0	53	0	53	n	0.02	2	79	2	79	y	0.00	0	37	0	37	n	0.02	1	58	1	58	n	ENSMUSG00000063268.13	Parp10	chr15	protein_coding	poly (ADP-ribose) polymerase family, member 10
known_NIR_6387	chr15	76131100	76131840	+	76131100	76131729	A3SS	ENSMUST00000229380.2	known	0.84	56	11	56	11	y	0.97	33	1	33	1	n	0.90	56	6	56	6	y	0.90	44	5	44	5	y	0.86	75	12	75	12	y	0.93	38	3	38	3	y	0.87	39	6	39	6	y	0.76	28	9	28	9	y	0.82	28	6	28	6	y	0.85	40	7	40	7	y	0.87	55	8	55	8	y	0.78	35	10	35	10	y	ENSMUSG00000022564.8	Grina	chr15	protein_coding	glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)
known_NIR_6388	chr15	76131100	76132051	+	76131100;76131768	76131729;76132051	ES	ENSMUST00000229772.2	known	0.97	231	8.0	231	11;5	y	0.98	224	4.5	224	1;8	n	0.97	369	9.5	369	6;13	y	0.98	242	6.0	242	5;7	y	0.96	328	13.0	328	12;14	y	0.99	285	3.5	285	3;4	y	0.97	292	8.5	292	6;11	y	0.96	209	9.5	209	9;10	y	0.97	176	5.0	176	6;4	y	0.98	293	6.0	293	7;5	y	0.95	196	10.5	196	8;13	y	0.96	246	11.5	246	10;13	y	ENSMUSG00000022564.8	Grina	chr15	protein_coding	glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)
known_NIR_6389	chr15	76131100	76132051	+	76131100;76131937	76131840;76132051	ES	ENSMUST00000230347.2	known	0.85	231	41.5	231	56;27	y	0.90	224	24.5	224	33;16	y	0.89	369	43.5	369	56;31	y	0.88	242	33.0	242	44;22	y	0.85	328	60.0	328	75;45	y	0.90	285	30.5	285	38;23	y	0.89	292	35.0	292	39;31	y	0.89	209	26.5	209	28;25	y	0.89	176	21.0	176	28;14	y	0.90	293	33.5	293	40;27	y	0.84	196	38.5	196	55;22	y	0.90	246	26.0	246	35;17	y	ENSMUSG00000022564.8	Grina	chr15	protein_coding	glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)
known_NIR_6390	chr15	76131100;76131937	76131729;76132051	+	76131100	76132051	cassetteExon	ENSMUST00000023225.8	known	0.08	19.0	231	11;27	231	y	0.04	8.5	224	1;16	224	n	0.05	18.5	369	6;31	369	y	0.05	13.5	242	5;22	242	y	0.08	28.5	328	12;45	328	y	0.04	13.0	285	3;23	285	y	0.06	18.5	292	6;31	292	y	0.08	17.0	209	9;25	209	y	0.05	10.0	176	6;14	176	y	0.05	17.0	293	7;27	293	y	0.07	15.0	196	8;22	196	y	0.05	13.5	246	10;17	246	y	ENSMUSG00000022564.8	Grina	chr15	protein_coding	glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)
known_NIR_6391	chr15	76131100;76131937	76131840;76132051	+	76131100;76131768	76131729;76132051	MXE	ENSMUST00000229772.2	known	0.84	41.5	8.0	56;27	11;5	y	0.84	24.5	4.5	33;16	1;8	n	0.82	43.5	9.5	56;31	6;13	y	0.85	33.0	6.0	44;22	5;7	y	0.82	60.0	13.0	75;45	12;14	y	0.90	30.5	3.5	38;23	3;4	y	0.80	35.0	8.5	39;31	6;11	y	0.74	26.5	9.5	28;25	9;10	y	0.81	21.0	5.0	28;14	6;4	y	0.85	33.5	6.0	40;27	7;5	y	0.79	38.5	10.5	55;22	8;13	y	0.69	26.0	11.5	35;17	10;13	y	ENSMUSG00000022564.8	Grina	chr15	protein_coding	glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)
known_NIR_6392	chr15	76131768	76132051	+	76131937	76132051	A5SS	ENSMUST00000229380.2	known	0.16	5	27	5	27	y	0.33	8	16	8	16	y	0.30	13	31	13	31	y	0.24	7	22	7	22	y	0.24	14	45	14	45	y	0.15	4	23	4	23	y	0.26	11	31	11	31	y	0.29	10	25	10	25	y	0.22	4	14	4	14	y	0.16	5	27	5	27	y	0.37	13	22	13	22	y	0.43	13	17	13	17	y	ENSMUSG00000022564.8	Grina	chr15	protein_coding	glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)
known_NIR_6393	chr15	76181907	76185487	-	76185394	76185487	A3SS&ES	ENSMUST00000171340.9	known	0.01	2	262	2	262	y	0.02	5	219	5	219	y	0.01	3	247	3	247	y	0.00	0	335	0	335	n	0.00	0	320	0	320	n	0.00	0	143	0	143	n	0.00	0	383	0	383	n	0.00	0	181	0	181	n	0.00	0	164	0	164	n	0.00	0	342	0	342	n	0.00	0	240	0	240	n	0.00	0	255	0	255	n	ENSMUSG00000022562.16	Oplah	chr15	protein_coding	5-oxoprolinase (ATP-hydrolysing)
known_NIR_6394	chr15	76186639	76186831	-	76186694	76186831	A3SS	ENSMUST00000171340.9	known	0.01	3	227	3	227	y	0.00	0	241	0	241	n	0.03	8	264	8	264	y	0.01	3	379	3	379	y	0.00	2	404	2	404	y	0.01	1	157	1	157	n	0.00	2	442	2	442	y	0.01	2	206	2	206	y	0.00	0	189	0	189	n	0.01	4	366	4	366	y	0.00	1	251	1	251	n	0.01	2	281	2	281	y	ENSMUSG00000022562.16	Oplah	chr15	protein_coding	5-oxoprolinase (ATP-hydrolysing)
known_NIR_6395	chr15	76211867	76213230	+	76211863	76213230	A5SS	ENSMUST00000059045.8	known	0.00	0	115	0	115	n	0.02	2	108	2	108	y	0.00	0	112	0	112	n	0.00	0	95	0	95	n	0.00	0	109	0	109	n	0.00	0	95	0	95	n	0.00	0	104	0	104	n	0.00	0	77	0	77	n	0.00	0	72	0	72	n	0.00	0	91	0	91	n	0.00	0	115	0	115	n	0.00	0	94	0	94	n	ENSMUSG00000034259.9	Exosc4	chr15	protein_coding	exosome component 4
known_NIR_6396	chr15	76212012	76213230	+	76211863	76213230	A5SS	ENSMUST00000059045.8	known	0.03	3	115	3	115	y	0.02	2	108	2	108	y	0.00	0	112	0	112	n	0.03	3	95	3	95	y	0.03	3	109	3	109	y	0.00	0	95	0	95	n	0.00	0	104	0	104	n	0.00	0	77	0	77	n	0.00	0	72	0	72	n	0.00	0	91	0	91	n	0.00	0	115	0	115	n	0.00	0	94	0	94	n	ENSMUSG00000034259.9	Exosc4	chr15	protein_coding	exosome component 4
known_NIR_6397	chr15	76216487	76216684	+	76216471	76216684	A5SS	ENSMUST00000023221.13	known	0.02	1	42	1	42	n	0.03	1	37	1	37	n	0.00	0	64	0	64	n	0.00	0	59	0	59	n	0.05	3	55	3	55	y	0.00	0	57	0	57	n	0.01	1	74	1	74	n	0.00	0	35	0	35	n	0.00	0	38	0	38	n	0.00	0	76	0	76	n	0.00	0	49	0	49	n	0.02	1	60	1	60	n	ENSMUSG00000022561.14	Gpaa1	chr15	protein_coding	GPI anchor attachment protein 1
known_NIR_6398	chr15	76217216	76217377	+	76217299	76217377	A5SS	ENSMUST00000023221.13	known	0.00	0	34	0	34	n	0.00	0	42	0	42	n	0.00	0	69	0	69	n	0.00	0	41	0	41	n	0.01	1	76	1	76	n	0.02	1	47	1	47	n	0.02	1	55	1	55	n	0.07	3	43	3	43	y	0.00	0	30	0	30	n	0.00	0	64	0	64	n	0.02	1	43	1	43	n	0.00	0	40	0	40	n	ENSMUSG00000022561.14	Gpaa1	chr15	protein_coding	GPI anchor attachment protein 1
known_NIR_6399	chr15	76227892	76228457	+	76227892	76228502	A3SS	ENSMUST00000023210.8	known	0.00	2	416	2	416	y	0.00	0	291	0	291	n	0.00	0	278	0	278	n	0.00	0	472	0	472	n	0.00	0	437	0	437	n	0.00	0	182	0	182	n	0.00	0	488	0	488	n	0.00	0	200	0	200	n	0.00	0	405	0	405	n	0.00	0	657	0	657	n	0.00	0	461	0	461	n	0.00	1	483	1	483	n	ENSMUSG00000022551.9	Cyc1	chr15	protein_coding	cytochrome c-1
known_NIR_6400	chr15	76227892	76228480	+	76227892	76228502	A3SS	ENSMUST00000023210.8	known	0.01	6	416	6	416	y	0.02	5	291	5	291	y	0.00	1	278	1	278	n	0.01	4	472	4	472	y	0.01	3	437	3	437	y	0.01	2	182	2	182	y	0.02	12	488	12	488	y	0.00	0	200	0	200	n	0.01	5	405	5	405	y	0.01	6	657	6	657	y	0.01	5	461	5	461	y	0.01	4	483	4	483	y	ENSMUSG00000022551.9	Cyc1	chr15	protein_coding	cytochrome c-1
known_NIR_6401	chr15	76228698	76228757	+	76228698	76228782	A3SS	ENSMUST00000023210.8	known	0.00	0	536	0	536	n	0.00	0	517	0	517	n	0.00	0	422	0	422	n	0.00	0	657	0	657	n	0.00	0	606	0	606	n	0.00	0	268	0	268	n	0.00	0	659	0	659	n	0.00	0	256	0	256	n	0.00	0	494	0	494	n	0.00	0	864	0	864	n	0.00	0	598	0	598	n	0.00	2	761	2	761	y	ENSMUSG00000022551.9	Cyc1	chr15	protein_coding	cytochrome c-1
known_NIR_6402	chr15	76231408	76231459	-	76231385	76231459	A3SS	ENSMUST00000229536.2	known	0.00	0	97	0	97	n	0.00	0	142	0	142	n	0.00	0	127	0	127	n	0.01	1	95	1	95	n	0.00	0	123	0	123	n	0.00	0	86	0	86	n	0.00	0	136	0	136	n	0.00	0	68	0	68	n	0.00	0	86	0	86	n	0.00	0	142	0	142	n	0.02	3	140	3	140	y	0.00	0	129	0	129	n	ENSMUSG00000022552.17	Sharpin	chr15	protein_coding	SHANK-associated RH domain interacting protein
known_NIR_6403	chr15	76231794	76231864	-	76231771	76231864	A3SS	ENSMUST00000229536.2	known	0.95	91	5	91	5	y	0.92	104	9	104	9	y	0.96	89	4	89	4	y	0.99	102	1	102	1	n	0.96	93	4	93	4	y	1.00	60	0	60	0	n	0.99	122	1	122	1	n	1.00	56	0	56	0	n	0.99	80	1	80	1	n	0.97	125	4	125	4	y	0.95	106	5	106	5	y	0.99	94	1	94	1	n	ENSMUSG00000022552.17	Sharpin	chr15	protein_coding	SHANK-associated RH domain interacting protein
known_NIR_6404	chr15	76231989	76232096	-	76232007	76232096	A3SS	ENSMUST00000154477.8	known	0.69	11	5	11	5	y	0.50	9	9	9	9	y	1.00	8	0	8	0	n	0.60	6	4	6	4	y	0.44	7	9	7	9	y	0.67	6	3	6	3	n	0.53	10	9	10	9	y	1.00	10	0	10	0	n	0.33	3	6	3	6	n	0.39	7	11	7	11	y	0.47	9	10	9	10	y	0.00	0	9	0	9	n	ENSMUSG00000022552.17	Sharpin	chr15	protein_coding	SHANK-associated RH domain interacting protein
known_NIR_6405	chr15	76231989	76232096	-	76232017	76232096	A3SS	ENSMUST00000230314.2	known	0.10	11	98	11	98	y	0.09	9	91	9	91	y	0.07	8	107	8	107	y	0.07	6	76	6	76	y	0.07	7	95	7	95	y	0.10	6	54	6	54	y	0.09	10	104	10	104	y	0.16	10	51	10	51	y	0.04	3	74	3	74	y	0.06	7	118	7	118	y	0.08	9	97	9	97	y	0.00	0	120	0	120	n	ENSMUSG00000022552.17	Sharpin	chr15	protein_coding	SHANK-associated RH domain interacting protein
known_NIR_6406	chr15	76232007	76232096	-	76232017	76232096	A3SS	ENSMUST00000230314.2	known	0.05	5	98	5	98	y	0.09	9	91	9	91	y	0.00	0	107	0	107	n	0.05	4	76	4	76	y	0.09	9	95	9	95	y	0.05	3	54	3	54	y	0.08	9	104	9	104	y	0.00	0	51	0	51	n	0.07	6	74	6	74	y	0.09	11	118	11	118	y	0.09	10	97	10	97	y	0.07	9	120	9	120	y	ENSMUSG00000022552.17	Sharpin	chr15	protein_coding	SHANK-associated RH domain interacting protein
known_NIR_6407	chr15	76232422	76232501	-	76232427	76232501	A3SS	ENSMUST00000230314.2	known	0.00	0	94	0	94	n	0.00	0	66	0	66	n	0.00	0	86	0	86	n	0.00	0	76	0	76	n	0.06	7	114	7	114	y	0.00	0	56	0	56	n	0.00	0	114	0	114	n	0.00	0	42	0	42	n	0.00	0	78	0	78	n	0.00	0	119	0	119	n	0.00	0	98	0	98	n	0.00	0	104	0	104	n	ENSMUSG00000022552.17	Sharpin	chr15	protein_coding	SHANK-associated RH domain interacting protein
known_NIR_6408	chr15	76232635	76234681	-	76232635	76234255	A5SS	ENSMUST00000154477.8	known	0.02	1	53	1	53	n	0.00	0	44	0	44	n	0.04	2	44	2	44	y	0.08	4	47	4	47	y	0.09	7	72	7	72	y	0.02	1	47	1	47	n	0.00	0	79	0	79	n	0.03	1	36	1	36	n	0.07	4	51	4	51	y	0.02	1	57	1	57	n	0.05	3	63	3	63	y	0.01	1	70	1	70	n	ENSMUSG00000022552.17	Sharpin	chr15	protein_coding	SHANK-associated RH domain interacting protein
known_NIR_6409	chr15	76232635;76234429	76234255;76234681	-	76232635	76234681	cassetteExon	ENSMUST00000230314.2	known	0.98	46.0	1	53;39	1	n	1.00	36.0	0	44;28	0	n	0.96	46.5	2	44;49	2	y	0.93	55.0	4	47;63	4	y	0.90	63.0	7	72;54	7	y	0.98	42.5	1	47;38	1	n	1.00	64.0	0	79;49	0	n	0.97	32.0	1	36;28	1	n	0.92	45.0	4	51;39	4	y	0.98	54.0	1	57;51	1	n	0.95	61.5	3	63;60	3	y	0.98	61.0	1	70;52	1	n	ENSMUSG00000022552.17	Sharpin	chr15	protein_coding	SHANK-associated RH domain interacting protein
known_NIR_6410	chr15	76235859	76236620	+	76235859	76236196	3pMXE	ENSMUST00000160097.2	known	0.86	18	3	18	3	y	0.65	13	7	13	7	y	0.80	28	7	28	7	y	0.76	26	8	26	8	y	0.86	24	4	24	4	y	0.77	20	6	20	6	y	0.78	56	16	56	16	y	0.56	14	11	14	11	y	0.82	27	6	27	6	y	0.89	31	4	31	4	y	0.64	16	9	16	9	y	0.77	30	9	30	9	y	ENSMUSG00000022553.17	Maf1	chr15	protein_coding	MAF1 homolog, negative regulator of RNA polymerase III
known_NIR_6411	chr15	76235859	76236620	+	76235859	76236667	A3SS	ENSMUST00000160853.8	known	0.55	18	15	18	15	y	0.48	13	14	13	14	y	0.51	28	27	28	27	y	0.72	26	10	26	10	y	0.62	24	15	24	15	y	0.71	20	8	20	8	y	0.72	56	22	56	22	y	0.78	14	4	14	4	y	0.71	27	11	27	11	y	0.53	31	27	31	27	y	0.57	16	12	16	12	y	0.59	30	21	30	21	y	ENSMUSG00000022553.17	Maf1	chr15	protein_coding	MAF1 homolog, negative regulator of RNA polymerase III
known_NIR_6412	chr15	76235859	76236620	+	76235859;76236241	76236196;76236620	ES	ENSMUST00000161527.8	known	0.88	18	2.5	18	3;2	y	0.74	13	4.5	13	7;2	y	0.82	28	6.0	28	7;5	y	0.81	26	6.0	26	8;4	y	0.83	24	5.0	24	4;6	y	0.83	20	4.0	20	6;2	y	0.84	56	11.0	56	16;6	y	0.68	14	6.5	14	11;2	y	0.86	27	4.5	27	6;3	y	0.87	31	4.5	31	4;5	y	0.74	16	5.5	16	9;2	y	0.80	30	7.5	30	9;6	y	ENSMUSG00000022553.17	Maf1	chr15	protein_coding	MAF1 homolog, negative regulator of RNA polymerase III
known_NIR_6413	chr15	76235859	76236624	+	76235859	76236196	A3SS&ES	ENSMUST00000161527.8	known	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.36	4	7	4	7	y	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.11	2	16	2	16	y	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	ENSMUSG00000022553.17	Maf1	chr15	protein_coding	MAF1 homolog, negative regulator of RNA polymerase III
known_NIR_6414	chr15	76235859	76236624	+	76235859	76236620	A3SS	ENSMUST00000023212.15	known	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.12	4	28	4	28	y	0.00	0	26	0	26	n	0.00	0	24	0	24	n	0.00	0	20	0	20	n	0.03	2	56	2	56	y	0.00	0	14	0	14	n	0.00	0	27	0	27	n	0.00	0	31	0	31	n	0.00	0	16	0	16	n	0.00	0	30	0	30	n	ENSMUSG00000022553.17	Maf1	chr15	protein_coding	MAF1 homolog, negative regulator of RNA polymerase III
known_NIR_6415	chr15	76235859	76236624	+	76235859	76236667	A3SS	ENSMUST00000160853.8	known	0.00	0	15	0	15	n	0.00	0	14	0	14	n	0.13	4	27	4	27	y	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	8	0	8	n	0.08	2	22	2	22	y	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	27	0	27	n	0.00	0	12	0	12	n	0.00	0	21	0	21	n	ENSMUSG00000022553.17	Maf1	chr15	protein_coding	MAF1 homolog, negative regulator of RNA polymerase III
known_NIR_6416	chr15	76235859	76236667	+	76235859	76236196	A3SS&ES	ENSMUST00000161527.8	known	0.83	15	3	15	3	y	0.67	14	7	14	7	y	0.79	27	7	27	7	y	0.56	10	8	10	8	y	0.79	15	4	15	4	y	0.57	8	6	8	6	y	0.58	22	16	22	16	y	0.27	4	11	4	11	y	0.65	11	6	11	6	y	0.87	27	4	27	4	y	0.57	12	9	12	9	y	0.70	21	9	21	9	y	ENSMUSG00000022553.17	Maf1	chr15	protein_coding	MAF1 homolog, negative regulator of RNA polymerase III
known_NIR_6417	chr15	76237660	76238047	+	76237660;76237920	76237786;76238047	ES	ENSMUST00000161527.8	known	0.00	0	64.0	0	65;63	n	0.00	0	71.5	0	86;57	n	0.03	3	95.5	3	98;93	y	0.00	0	76.5	0	84;69	n	0.00	0	70.5	0	64;77	n	0.00	0	38.0	0	44;32	n	0.00	0	108.0	0	117;99	n	0.00	0	44.5	0	47;42	n	0.00	0	63.0	0	51;75	n	0.00	0	72.5	0	76;69	n	0.00	0	89.5	0	96;83	n	0.00	0	76.5	0	79;74	n	ENSMUSG00000022553.17	Maf1	chr15	protein_coding	MAF1 homolog, negative regulator of RNA polymerase III
known_NIR_6418	chr15	76237925	76238047	+	76237920	76238047	A5SS	ENSMUST00000161527.8	known	0.00	0	63	0	63	n	0.00	0	57	0	57	n	0.00	0	93	0	93	n	0.00	0	69	0	69	n	0.00	0	77	0	77	n	0.00	0	32	0	32	n	0.02	2	99	2	99	y	0.00	0	42	0	42	n	0.01	1	75	1	75	n	0.00	0	69	0	69	n	0.00	0	83	0	83	n	0.00	0	74	0	74	n	ENSMUSG00000022553.17	Maf1	chr15	protein_coding	MAF1 homolog, negative regulator of RNA polymerase III
known_NIR_6419	chr15	76253740	76253852	+	76253769	76253852	A5SS	ENSMUST00000023213.8	known	0.41	7	10	7	10	y	0.50	6	6	6	6	y	0.00	0	26	0	26	n	0.33	4	8	4	8	y	0.32	8	17	8	17	y	0.33	3	6	3	6	n	0.44	7	9	7	9	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.29	4	10	4	10	y	0.62	5	3	5	3	n	0.00	0	7	0	7	n	ENSMUSG00000022554.8	Hgh1	chr15	protein_coding	HGH1 homolog
known_NIR_6420	chr15	76297180	76298462	+	76297180	76298419	A3SS	ENSMUST00000161305.8	known	0.00	0	22	0	22	n	0.00	0	16	0	16	n	0.04	2	49	2	49	y	0.00	0	20	0	20	n	0.00	0	53	0	53	n	0.00	0	28	0	28	n	0.03	1	36	1	36	n	0.10	4	37	4	37	y	0.00	0	18	0	18	n	0.00	0	56	0	56	n	0.00	0	18	0	18	n	0.00	0	35	0	35	n	ENSMUSG00000022558.17	Mroh1	chr15	protein_coding	maestro heat-like repeat family member 1
known_NIR_6421	chr15	76316495;76316598	76316572;76317474	+	76316495	76317474	cassetteExon	ENSMUST00000161305.8	known	0.93	26.0	2	26;26	2	y	1.00	13.0	0	12;14	0	n	0.94	51.5	3	47;56	3	y	1.00	26.5	0	25;28	0	n	0.98	42.5	1	42;43	1	n	0.92	23.5	2	23;24	2	y	0.95	37.5	2	36;39	2	y	0.83	28.5	6	21;36	6	y	0.93	25.0	2	24;26	2	y	0.98	44.0	1	42;46	1	n	1.00	27.0	0	25;29	0	n	0.97	35.5	1	33;38	1	n	ENSMUSG00000022558.17	Mroh1	chr15	protein_coding	maestro heat-like repeat family member 1
known_NIR_6422	chr15	76321590	76330716	+	76321590;76327604	76327450;76330716	ES	ENSMUST00000096385.11	known	0.00	0	36.0	0	30;42	n	0.00	0	38.5	0	40;37	n	0.03	2	61.5	2	74;49	y	0.00	0	35.0	0	33;37	n	0.00	0	71.5	0	83;60	n	0.09	4	40.0	4	36;44	y	0.00	0	51.5	0	48;55	n	0.00	0	47.5	0	55;40	n	0.00	0	35.5	0	39;32	n	0.00	0	64.0	0	60;68	n	0.00	0	46.5	0	54;39	n	0.00	0	46.0	0	49;43	n	ENSMUSG00000022558.17	Mroh1	chr15	protein_coding	maestro heat-like repeat family member 1
known_NIR_6423	chr15	76321590	76330716	+	76327604	76330716	5pMXE	ENSMUST00000161962.2	known	0.00	0	42	0	42	n	0.00	0	37	0	37	n	0.04	2	49	2	49	y	0.00	0	37	0	37	n	0.00	0	60	0	60	n	0.08	4	44	4	44	y	0.00	0	55	0	55	n	0.00	0	40	0	40	n	0.00	0	32	0	32	n	0.00	0	68	0	68	n	0.00	0	39	0	39	n	0.00	0	43	0	43	n	ENSMUSG00000022558.17	Mroh1	chr15	protein_coding	maestro heat-like repeat family member 1
known_NIR_6424	chr15	76336378	76336481	+	76336378	76336447	A3SS	ENSMUST00000096385.11	known	0.05	3	60	3	60	y	0.00	0	75	0	75	n	0.02	2	85	2	85	y	0.00	0	42	0	42	n	0.00	0	80	0	80	n	0.00	0	59	0	59	n	0.02	2	98	2	98	y	0.00	0	54	0	54	n	0.00	0	69	0	69	n	0.00	0	80	0	80	n	0.01	1	72	1	72	n	0.00	0	61	0	61	n	ENSMUSG00000022558.17	Mroh1	chr15	protein_coding	maestro heat-like repeat family member 1
known_NIR_6425	chr15	76380789;76381160	76381036;76381819	+	76380789	76381819	cassetteExon	ENSMUST00000228868.2	known	0.95	37.0	2	40;34	2	y	0.97	30.0	1	34;26	1	n	0.93	28.0	2	22;34	2	y	1.00	33.5	0	34;33	0	n	0.96	47.5	2	53;42	2	y	1.00	17.0	0	18;16	0	n	0.98	53.5	1	52;55	1	n	0.89	25.0	3	28;22	3	y	1.00	36.5	0	34;39	0	n	1.00	52.5	0	57;48	0	n	1.00	52.0	0	50;54	0	n	1.00	38.5	0	34;43	0	n	ENSMUSG00000022556.12	Hsf1	chr15	protein_coding	heat shock factor 1
known_NIR_6426	chr15	76381894	76381968	+	76380278	76381968	A5SS	ENSMUST00000226860.2	known	1.00	45	0	45	0	n	1.00	29	0	29	0	n	0.94	30	2	30	2	y	0.94	45	3	45	3	y	1.00	47	0	47	0	n	1.00	34	0	34	0	n	0.99	71	1	71	1	n	1.00	37	0	37	0	n	1.00	45	0	45	0	n	1.00	48	0	48	0	n	1.00	45	0	45	0	n	1.00	52	0	52	0	n	ENSMUSG00000022556.12	Hsf1	chr15	protein_coding	heat shock factor 1
known_NIR_6427	chr15	76382115	76382622	+	76382490	76382622	A5SS&ES	ENSMUST00000228868.2	known	0.06	2	29	2	29	y	0.03	1	32	1	32	n	0.16	5	27	5	27	y	0.06	2	31	2	31	y	0.07	3	40	3	40	y	0.00	0	17	0	17	n	0.06	3	50	3	50	y	0.05	1	19	1	19	n	0.10	3	27	3	27	y	0.09	3	29	3	29	y	0.00	0	34	0	34	n	0.09	4	39	4	39	y	ENSMUSG00000022556.12	Hsf1	chr15	protein_coding	heat shock factor 1
known_NIR_6428	chr15	76382891;76383415	76383332;76384148	+	76382891	76384148	cassetteExon	ENSMUST00000228868.2	known	0.02	0.5	31	1;0	31	n	0.24	6.5	21	3;10	21	y	0.03	1.0	34	1;1	34	n	0.03	1.0	38	2;0	38	n	0.09	4.0	42	3;5	42	y	0.04	0.5	11	0;1	11	n	0.01	0.5	45	1;0	45	n	0.13	2.0	13	2;2	13	y	0.02	0.5	25	1;0	25	n	0.01	0.5	36	0;1	36	n	0.04	1.5	34	2;1	34	n	0.03	1.0	38	0;2	38	n	ENSMUSG00000022556.12	Hsf1	chr15	protein_coding	heat shock factor 1
known_NIR_6429	chr15	76384253	76384467	+	76384253	76384331	A3SS	ENSMUST00000228868.2	known	0.17	8	38	8	38	y	0.12	6	46	6	46	y	0.26	12	34	12	34	y	0.23	10	33	10	33	y	0.05	3	54	3	54	y	0.09	2	21	2	21	y	0.13	6	41	6	41	y	0.15	4	23	4	23	y	0.03	1	32	1	32	n	0.11	5	42	5	42	y	0.07	4	56	4	56	y	0.05	3	56	3	56	y	ENSMUSG00000022556.12	Hsf1	chr15	protein_coding	heat shock factor 1
known_NIR_6430	chr15	76384253	76384467	+	76384253;76384396	76384331;76384467	ES	ENSMUST00000228757.2	known	0.21	8	31.0	8	38;24	y	0.13	6	39.0	6	46;32	y	0.31	12	27.0	12	34;20	y	0.28	10	26.0	10	33;19	y	0.06	3	46.5	3	54;39	y	0.08	2	24.0	2	21;27	y	0.14	6	38.0	6	41;35	y	0.17	4	20.0	4	23;17	y	0.03	1	31.0	1	32;30	n	0.12	5	36.0	5	42;30	y	0.08	4	47.0	4	56;38	y	0.06	3	48.5	3	56;41	y	ENSMUSG00000022556.12	Hsf1	chr15	protein_coding	heat shock factor 1
known_NIR_6431	chr15	76384536	76384625	+	76384536	76384617	A3SS	ENSMUST00000228868.2	known	0.00	0	43	0	43	n	0.03	1	39	1	39	n	0.00	0	38	0	38	n	0.00	0	34	0	34	n	0.06	3	49	3	49	y	0.00	0	18	0	18	n	0.05	3	52	3	52	y	0.00	0	27	0	27	n	0.00	0	36	0	36	n	0.00	0	53	0	53	n	0.06	3	45	3	45	y	0.00	0	42	0	42	n	ENSMUSG00000022556.12	Hsf1	chr15	protein_coding	heat shock factor 1
known_NIR_6432	chr15	76387201	76387354	-	76387271	76387354	A3SS	ENSMUST00000023214.11	known	0.09	4	39	4	39	y	0.04	2	48	2	48	y	0.12	7	52	7	52	y	0.08	4	48	4	48	y	0.11	9	71	9	71	y	0.12	4	29	4	29	y	0.09	8	81	8	81	y	0.15	5	29	5	29	y	0.09	4	41	4	41	y	0.06	4	61	4	61	y	0.05	3	55	3	55	y	0.13	8	52	8	52	y	ENSMUSG00000022555.13	Dgat1	chr15	protein_coding	diacylglycerol O-acyltransferase 1
known_NIR_6433	chr15	76388569	76388686	-	76388601	76388686	A3SS	ENSMUST00000023214.11	known	0.00	0	21	0	21	n	0.00	0	17	0	17	n	0.00	0	25	0	25	n	0.02	1	43	1	43	n	0.11	3	25	3	25	y	0.07	2	25	2	25	y	0.05	2	37	2	37	y	0.00	0	25	0	25	n	0.00	0	38	0	38	n	0.00	0	43	0	43	n	0.00	0	40	0	40	n	0.03	1	36	1	36	n	ENSMUSG00000022555.13	Dgat1	chr15	protein_coding	diacylglycerol O-acyltransferase 1
known_NIR_6434	chr15	76468834	76471958	+	76460694	76471958	A5SS	ENSMUST00000162503.8	known	0.00	0	58	0	58	n	0.00	0	49	0	49	n	0.00	0	19	0	19	n	0.13	9	61	9	61	y	0.02	1	64	1	64	n	0.00	0	19	0	19	n	0.02	1	54	1	54	n	0.00	0	17	0	17	n	0.04	2	55	2	55	y	0.12	11	78	11	78	y	0.12	10	73	10	73	y	0.10	9	79	9	79	y	ENSMUSG00000022550.19	Adck5	chr15	protein_coding	aarF domain containing kinase 5
known_NIR_6435	chr15	76473418	76475621	+	76473418	76477434	A3SS	ENSMUST00000162503.8	known	0.00	0	47	0	47	n	0.07	2	27	2	27	y	0.00	0	11	0	11	n	0.06	3	48	3	48	y	0.11	7	57	7	57	y	0.09	2	21	2	21	y	0.11	7	57	7	57	y	0.00	0	18	0	18	n	0.05	3	54	3	54	y	0.06	5	72	5	72	y	0.07	5	70	5	70	y	0.08	5	57	5	57	y	ENSMUSG00000022550.19	Adck5	chr15	protein_coding	aarF domain containing kinase 5
known_NIR_6436	chr15	76477509	76477636	+	76477509	76477631	A3SS	ENSMUST00000162503.8	known	0.15	6	34	6	34	y	0.06	2	33	2	33	y	0.25	5	15	5	15	y	0.19	10	43	10	43	y	0.12	5	35	5	35	y	0.14	3	18	3	18	y	0.16	9	49	9	49	y	0.00	0	20	0	20	n	0.16	8	42	8	42	y	0.07	5	64	5	64	y	0.18	13	59	13	59	y	0.17	11	52	11	52	y	ENSMUSG00000022550.19	Adck5	chr15	protein_coding	aarF domain containing kinase 5
known_NIR_6437	chr15	76480107	76480209	-	76480132	76480209	A3SS	ENSMUST00000230822.2	known	0.04	4	86	4	86	y	0.04	3	71	3	71	y	0.00	0	49	0	49	n	0.00	0	60	0	60	n	0.01	1	81	1	81	n	0.03	1	29	1	29	n	0.06	5	79	5	79	y	0.00	0	46	0	46	n	0.03	2	59	2	59	y	0.05	4	71	4	71	y	0.03	2	76	2	76	y	0.02	2	90	2	90	y	ENSMUSG00000034022.9	Cpsf1	chr15	protein_coding	cleavage and polyadenylation specific factor 1
known_NIR_6438	chr15	76481541	76481846	-	76481541	76481631	5pMXE	ENSMUST00000230822.2	known	0.05	2	40	2	40	y	0.00	0	43	0	43	n	0.00	0	44	0	44	n	0.00	0	61	0	61	n	0.00	0	96	0	96	n	0.08	2	24	2	24	y	0.00	0	46	0	46	n	0.00	0	31	0	31	n	0.00	0	55	0	55	n	0.00	0	73	0	73	n	0.00	0	87	0	87	n	0.00	0	56	0	56	n	ENSMUSG00000034022.9	Cpsf1	chr15	protein_coding	cleavage and polyadenylation specific factor 1
known_NIR_6439	chr15	76481541	76481846	-	76481772	76481846	A3SS&ES	ENSMUST00000229798.2	known	0.02	2	94	2	94	y	0.00	0	80	0	80	n	0.00	0	84	0	84	n	0.00	0	72	0	72	n	0.00	0	116	0	116	n	0.05	2	42	2	42	y	0.00	0	115	0	115	n	0.00	0	53	0	53	n	0.00	0	79	0	79	n	0.00	0	121	0	121	n	0.00	0	105	0	105	n	0.00	0	103	0	103	n	ENSMUSG00000034022.9	Cpsf1	chr15	protein_coding	cleavage and polyadenylation specific factor 1
known_NIR_6440	chr15	76481541;76481772	76481631;76481846	-	76481541	76481846	cassetteExon	ENSMUST00000229982.2	known	0.97	67.0	2	40;94	2	y	1.00	61.5	0	43;80	0	n	1.00	64.0	0	44;84	0	n	1.00	66.5	0	61;72	0	n	1.00	106.0	0	96;116	0	n	0.94	33.0	2	24;42	2	y	1.00	80.5	0	46;115	0	n	1.00	42.0	0	31;53	0	n	1.00	67.0	0	55;79	0	n	1.00	97.0	0	73;121	0	n	1.00	96.0	0	87;105	0	n	1.00	79.5	0	56;103	0	n	ENSMUSG00000034022.9	Cpsf1	chr15	protein_coding	cleavage and polyadenylation specific factor 1
known_NIR_6441	chr15	76486787	76486991	-	76486848	76486991	A3SS	ENSMUST00000231042.2	known	0.15	5	29	5	29	y	0.00	0	18	0	18	n	0.05	2	41	2	41	y	0.05	2	38	2	38	y	0.07	3	40	3	40	y	0.07	1	14	1	14	n	0.07	3	41	3	41	y	0.04	1	22	1	22	n	0.03	1	33	1	33	n	0.00	0	34	0	34	n	0.05	2	36	2	36	y	0.02	1	40	1	40	n	ENSMUSG00000034022.9	Cpsf1	chr15	protein_coding	cleavage and polyadenylation specific factor 1
known_NIR_6442	chr15	76487845	76487924	-	76487769	76487924	A3SS	ENSMUST00000231042.2	known	1.00	14	0	14	0	n	0.96	22	1	22	1	n	1.00	22	0	22	0	n	0.94	16	1	16	1	n	0.91	31	3	31	3	y	0.80	8	2	8	2	y	1.00	22	0	22	0	n	1.00	22	0	22	0	n	1.00	24	0	24	0	n	1.00	41	0	41	0	n	1.00	26	0	26	0	n	0.89	16	2	16	2	y	ENSMUSG00000034022.9	Cpsf1	chr15	protein_coding	cleavage and polyadenylation specific factor 1
known_NIR_6443	chr15	76508918	76509334	-	76508820	76509334	A3SS	ENSMUST00000229545.2	known	0.08	17	208	17	208	y	0.07	15	198	15	198	y	0.06	18	289	18	289	y	0.07	17	217	17	217	y	0.05	14	274	14	274	y	0.07	13	163	13	163	y	0.08	24	267	24	267	y	0.03	5	160	5	160	y	0.07	14	190	14	190	y	0.06	18	305	18	305	y	0.07	18	249	18	249	y	0.06	16	243	16	243	y	ENSMUSG00000115987.2	Vps28	chr15	protein_coding	vacuolar protein sorting 28
known_NIR_6444	chr15	76531895	76532299	-	76530774	76532299	A3SS	ENSMUST00000081291.13	known	0.17	24	117	24	117	y	0.15	22	129	22	129	y	0.14	20	123	20	123	y	0.24	29	92	29	92	y	0.13	28	181	28	181	y	0.11	12	94	12	94	y	0.20	37	152	37	152	y	0.16	16	83	16	83	y	0.19	23	101	23	101	y	0.20	37	144	37	144	y	0.17	23	111	23	111	y	0.24	32	101	32	101	y	ENSMUSG00000053929.18	Cyhr1	chr15	protein_coding	cysteine and histidine rich 1
known_NIR_6445	chr15	76531895	76532299	-	76531968	76532299	A3SS	ENSMUST00000176274.2	known	0.23	24	80	24	80	y	0.25	22	65	22	65	y	0.23	20	66	20	66	y	0.28	29	74	29	74	y	0.18	28	127	28	127	y	0.23	12	41	12	41	y	0.29	37	92	37	92	y	0.27	16	43	16	43	y	0.28	23	58	23	58	y	0.22	37	129	37	129	y	0.19	23	95	23	95	y	0.27	32	88	32	88	y	ENSMUSG00000053929.18	Cyhr1	chr15	protein_coding	cysteine and histidine rich 1
known_NIR_6446	chr15	76531968	76532299	-	76530774	76532299	A3SS	ENSMUST00000081291.13	known	0.41	80	117	80	117	y	0.34	65	129	65	129	y	0.35	66	123	66	123	y	0.45	74	92	74	92	y	0.41	127	181	127	181	y	0.30	41	94	41	94	y	0.38	92	152	92	152	y	0.34	43	83	43	83	y	0.36	58	101	58	101	y	0.47	129	144	129	144	y	0.46	95	111	95	111	y	0.47	88	101	88	101	y	ENSMUSG00000053929.18	Cyhr1	chr15	protein_coding	cysteine and histidine rich 1
known_NIR_6447	chr15	76533330	76540560	-	76533379	76540560	A3SS	ENSMUST00000176274.2	known	0.00	0	127	0	127	n	0.03	3	89	3	89	y	0.05	7	135	7	135	y	0.04	6	140	6	140	y	0.00	0	215	0	215	n	0.00	0	95	0	95	n	0.00	0	163	0	163	n	0.03	2	66	2	66	y	0.03	4	118	4	118	y	0.00	0	148	0	148	n	0.00	0	123	0	123	n	0.05	8	152	8	152	y	ENSMUSG00000053929.18	Cyhr1	chr15	protein_coding	cysteine and histidine rich 1
known_NIR_6448	chr15	76543705	76544155	-	76543639	76544155	A3SS	ENSMUST00000081291.13	known	0.13	6	41	6	41	y	0.09	3	31	3	31	y	0.00	0	23	0	23	n	0.06	3	45	3	45	y	0.07	4	53	4	53	y	0.00	0	25	0	25	n	0.06	3	46	3	46	y	0.03	1	35	1	35	n	0.03	1	34	1	34	n	0.02	1	56	1	56	n	0.03	2	60	2	60	y	0.05	3	63	3	63	y	ENSMUSG00000053929.18	Cyhr1	chr15	protein_coding	cysteine and histidine rich 1
known_NIR_6449	chr15	76545052	76545206	+	76544965	76545206	A5SS	ENSMUST00000230451.2	known	0.00	0	18	0	18	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.11	1	8	1	8	n	0.11	1	8	1	8	n	0.00	0	1	0	1	n	0.00	0	12	0	12	n	0.14	1	6	1	6	n	0.00	0	11	0	11	n	0.17	4	19	4	19	y	0.00	0	8	0	8	n	0.00	0	9	0	9	n	ENSMUSG00000004187.12	Kifc2	chr15	protein_coding	kinesin family member C2
known_NIR_6450	chr15	76545584	76545927	+	76545584;76545818	76545680;76545927	ES	ENSMUST00000230451.2	known	0.33	8	16.5	8	14;19	y	0.27	2	5.5	2	0;11	n	0.25	2	6.0	2	4;8	y	0.23	4	13.5	4	13;14	y	0.29	6	14.5	6	12;17	y	0.22	1	3.5	1	3;4	n	0.27	4	11.0	4	9;13	y	0.30	3	7.0	3	5;9	y	0.00	0	16.0	0	16;16	n	0.28	5	13.0	5	12;14	y	0.17	2	10.0	2	12;8	y	0.10	2	19.0	2	15;23	y	ENSMUSG00000004187.12	Kifc2	chr15	protein_coding	kinesin family member C2
known_NIR_6451	chr15	76555962	76574372	+	76573694	76574372	5pMXE	ENSMUST00000138951.2	known	0.63	22	13	22	13	y	0.59	22	15	22	15	y	0.71	27	11	27	11	y	0.73	46	17	46	17	y	0.73	54	20	54	20	y	0.67	16	8	16	8	y	0.68	30	14	30	14	y	0.64	16	9	16	9	y	0.69	22	10	22	10	y	0.67	39	19	39	19	y	0.72	34	13	34	13	y	0.73	33	12	33	12	y	ENSMUSG00000033819.17	Ppp1r16a	chr15	protein_coding	protein phosphatase 1, regulatory subunit 16A
known_NIR_6452	chr15	76555962;76573694	76573528;76574372	+	76555962	76574372	cassetteExon	ENSMUST00000037551.15	known	0.29	9.0	22	5;13	22	y	0.34	11.5	22	8;15	22	y	0.26	9.5	27	8;11	27	y	0.25	15.5	46	14;17	46	y	0.21	14.5	54	9;20	54	y	0.29	6.5	16	5;8	16	y	0.26	10.5	30	7;14	30	y	0.29	6.5	16	4;9	16	y	0.29	9.0	22	8;10	22	y	0.27	14.5	39	10;19	39	y	0.23	10.0	34	7;13	34	y	0.24	10.5	33	9;12	33	y	ENSMUSG00000033819.17	Ppp1r16a	chr15	protein_coding	protein phosphatase 1, regulatory subunit 16A
known_NIR_6453	chr15	76577338	76577795	+	76577338	76577427	3pMXE	ENSMUST00000143274.8	known	0.05	3	63	3	63	y	0.00	0	83	0	83	n	0.06	3	48	3	48	y	0.00	0	50	0	50	n	0.00	0	96	0	96	n	0.00	0	42	0	42	n	0.02	1	62	1	62	n	0.00	0	42	0	42	n	0.02	1	47	1	47	n	0.01	1	80	1	80	n	0.02	1	61	1	61	n	0.00	0	65	0	65	n	ENSMUSG00000033819.17	Ppp1r16a	chr15	protein_coding	protein phosphatase 1, regulatory subunit 16A
known_NIR_6454	chr15	76577338;76577714	76577427;76577795	+	76577338	76577795	cassetteExon	ENSMUST00000150399.8	known	0.95	60.5	3	63;58	3	y	1.00	80.5	0	83;78	0	n	0.94	45.5	3	48;43	3	y	1.00	53.5	0	50;57	0	n	1.00	94.5	0	96;93	0	n	1.00	43.0	0	42;44	0	n	0.99	78.0	1	62;94	1	n	1.00	46.0	0	42;50	0	n	0.98	42.0	1	47;37	1	n	0.99	83.5	1	80;87	1	n	0.98	56.5	1	61;52	1	n	1.00	61.5	0	65;58	0	n	ENSMUSG00000033819.17	Ppp1r16a	chr15	protein_coding	protein phosphatase 1, regulatory subunit 16A
known_NIR_6455	chr15	76580040	76580998	+	76580040	76581056	A3SS	ENSMUST00000231028.2	known	0.65	20	11	20	11	y	0.45	10	12	10	12	y	1.00	1	0	1	0	n	0.56	19	15	19	15	y	0.41	11	16	11	16	y	1.00	4	0	4	0	n	0.50	18	18	18	18	y	0.67	10	5	10	5	y	0.62	18	11	18	11	y	0.57	12	9	12	9	y	0.75	18	6	18	6	y	0.63	17	10	17	10	y	ENSMUSG00000022546.6	Gpt	chr15	protein_coding	glutamic pyruvic transaminase, soluble
known_NIR_6456	chr15	76586550	76586707	+	76586550	76586844	A3SS	ENSMUST00000019224.9	known	0.10	5	43	5	43	y	0.00	0	33	0	33	n	0.08	3	36	3	36	y	0.04	1	27	1	27	n	0.05	3	63	3	63	y	0.00	0	28	0	28	n	0.00	0	49	0	49	n	0.11	3	25	3	25	y	0.00	0	41	0	41	n	0.00	0	47	0	47	n	0.02	1	49	1	49	n	0.03	1	39	1	39	n	ENSMUSG00000019080.9	Mfsd3	chr15	protein_coding	major facilitator superfamily domain containing 3
known_NIR_6457	chr15	76587383	76587477	+	76587383	76587463	A3SS	ENSMUST00000019224.9	known	0.07	4	52	4	52	y	0.00	0	53	0	53	n	0.00	0	25	0	25	n	0.00	0	39	0	39	n	0.04	4	85	4	85	y	0.00	0	29	0	29	n	0.07	5	71	5	71	y	0.17	5	24	5	24	y	0.07	3	41	3	41	y	0.07	5	68	5	68	y	0.09	7	68	7	68	y	0.04	2	54	2	54	y	ENSMUSG00000019080.9	Mfsd3	chr15	protein_coding	major facilitator superfamily domain containing 3
known_NIR_6458	chr15	76595036	76597067	+	76595127	76597067	A5SS	ENSMUST00000127208.8	known	0.11	2	17	2	17	y	0.05	1	20	1	20	n	0.09	3	32	3	32	y	0.24	4	13	4	13	y	0.00	0	33	0	33	n	0.00	0	24	0	24	n	0.00	0	23	0	23	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.03	1	29	1	29	n	0.08	2	23	2	23	y	0.00	0	17	0	17	n	ENSMUSG00000033728.15	Lrrc14	chr15	protein_coding	leucine rich repeat containing 14
known_NIR_6459	chr15	76595036	76597067	+	76595730	76597067	A5SS&ES	ENSMUST00000136840.8	known	0.25	2	6	2	6	n	0.11	1	8	1	8	n	0.20	3	12	3	12	y	0.25	4	12	4	12	y	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.12	1	7	1	7	n	0.18	2	9	2	9	y	0.00	0	5	0	5	n	ENSMUSG00000033728.15	Lrrc14	chr15	protein_coding	leucine rich repeat containing 14
known_NIR_6460	chr15	76595127	76597067	+	76595127;76595730	76595556;76597067	ES	ENSMUST00000136840.8	known	0.85	17	3.0	17	0;6	n	0.80	20	5.0	20	2;8	y	0.82	32	7.0	32	2;12	y	0.54	13	11.0	13	10;12	y	0.88	33	4.5	33	2;7	y	0.92	24	2.0	24	1;3	n	0.85	23	4.0	23	0;8	n	0.76	13	4.0	13	0;8	n	0.76	11	3.5	11	0;7	n	0.84	29	5.5	29	4;7	y	0.84	23	4.5	23	0;9	n	0.77	17	5.0	17	5;5	y	ENSMUSG00000033728.15	Lrrc14	chr15	protein_coding	leucine rich repeat containing 14
known_NIR_6461	chr15	76595127	76597067	+	76595730	76597067	A5SS	ENSMUST00000137649.8	known	0.74	17	6	17	6	y	0.71	20	8	20	8	y	0.73	32	12	32	12	y	0.52	13	12	13	12	y	0.82	33	7	33	7	y	0.89	24	3	24	3	y	0.74	23	8	23	8	y	0.62	13	8	13	8	y	0.61	11	7	11	7	y	0.81	29	7	29	7	y	0.72	23	9	23	9	y	0.77	17	5	17	5	y	ENSMUSG00000033728.15	Lrrc14	chr15	protein_coding	leucine rich repeat containing 14
known_NIR_6462	chr15	76595127;76595730	76595622;76597067	+	76595127	76597067	cassetteExon	ENSMUST00000127208.8	known	0.15	3.0	17	0;6	17	n	0.17	4.0	20	0;8	20	n	0.19	7.5	32	3;12	32	y	0.32	6.0	13	0;12	13	n	0.12	4.5	33	2;7	33	y	0.09	2.5	24	2;3	24	y	0.16	4.5	23	1;8	23	n	0.24	4.0	13	0;8	13	n	0.27	4.0	11	1;7	11	n	0.11	3.5	29	0;7	29	n	0.21	6.0	23	3;9	23	y	0.13	2.5	17	0;5	17	n	ENSMUSG00000033728.15	Lrrc14	chr15	protein_coding	leucine rich repeat containing 14
known_NIR_6463	chr15	76607419	76607577	-	76607419	76607793	A5SS	ENSMUST00000231059.2	known	0.00	0	22	0	22	n	0.00	0	8	0	8	n	0.17	1	5	1	5	n	0.00	0	15	0	15	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.00	0	21	0	21	n	0.00	0	6	0	6	n	0.10	1	9	1	9	n	0.10	2	18	2	18	y	0.25	4	12	4	12	y	0.00	0	15	0	15	n	ENSMUSG00000116138.2	C030006K11Rik	chr15	protein_coding	RIKEN cDNA C030006K11 gene
known_NIR_6464	chr15	76607419	76607577	-	76607419	76607855	A5SS	ENSMUST00000036247.10	known	0.00	0	82	0	82	n	0.00	0	48	0	48	n	0.02	1	65	1	65	n	0.00	0	94	0	94	n	0.00	0	121	0	121	n	0.00	0	41	0	41	n	0.00	0	96	0	96	n	0.00	0	42	0	42	n	0.01	1	69	1	69	n	0.02	2	108	2	108	y	0.04	4	91	4	91	y	0.00	0	94	0	94	n	ENSMUSG00000116138.2	C030006K11Rik	chr15	protein_coding	RIKEN cDNA C030006K11 gene
known_NIR_6465	chr15	76607419	76607793	-	76607419	76607855	A5SS	ENSMUST00000036247.10	known	0.21	22	82	22	82	y	0.14	8	48	8	48	y	0.07	5	65	5	65	y	0.14	15	94	15	94	y	0.12	16	121	16	121	y	0.13	6	41	6	41	y	0.18	21	96	21	96	y	0.12	6	42	6	42	y	0.12	9	69	9	69	y	0.14	18	108	18	108	y	0.12	12	91	12	91	y	0.14	15	94	15	94	y	ENSMUSG00000116138.2	C030006K11Rik	chr15	protein_coding	RIKEN cDNA C030006K11 gene
known_NIR_6466	chr15	76970355	76982140	-	76970355;76978690	76978651;76982140	ES	ENSMUST00000171751.10	known	0.17	2	10.0	2	13;7	y	0.24	2	6.5	2	8;5	y	0.14	3	18.0	3	18;18	y	0.11	1	8.5	1	9;8	n	0.19	4	17.5	4	16;19	y	0.00	0	9.0	0	7;11	n	0.07	1	12.5	1	11;14	n	0.12	2	14.0	2	12;16	y	0.00	0	12.0	0	16;8	n	0.07	1	13.5	1	21;6	n	0.27	3	8.0	3	9;7	y	0.09	2	19.5	2	17;22	y	ENSMUSG00000033565.19	Rbfox2	chr15	protein_coding	RNA binding protein, fox-1 homolog (C. elegans) 2
known_NIR_6467	chr15	76982272	76983440	-	76982284	76983440	A3SS	ENSMUST00000171751.10	known	0.50	5	5	5	5	y	0.82	18	4	18	4	y	0.52	17	16	17	16	y	0.29	4	10	4	10	y	0.43	20	26	20	26	y	0.50	10	10	10	10	y	0.59	17	12	17	12	y	0.52	13	12	13	12	y	0.43	9	12	9	12	y	0.76	16	5	16	5	y	0.23	3	10	3	10	y	0.42	11	15	11	15	y	ENSMUSG00000033565.19	Rbfox2	chr15	protein_coding	RNA binding protein, fox-1 homolog (C. elegans) 2
known_NIR_6468	chr15	76987139	76997805	-	76987139;76989869	76989777;76997805	ES	ENSMUST00000171751.10	known	0.05	1	21.0	1	22;20	n	0.00	0	14.0	0	19;9	n	0.04	1	26.0	1	25;27	n	0.00	0	22.0	0	20;24	n	0.00	0	34.5	0	37;32	n	0.00	0	17.0	0	20;14	n	0.00	0	24.0	0	35;13	n	0.00	0	19.5	0	17;22	n	0.00	0	14.0	0	15;13	n	0.07	2	25.5	2	28;23	y	0.00	0	10.5	0	12;9	n	0.00	0	25.0	0	24;26	n	ENSMUSG00000033565.19	Rbfox2	chr15	protein_coding	RNA binding protein, fox-1 homolog (C. elegans) 2
known_NIR_6469	chr15	77001264	77016917	-	77001267	77016917	A3SS	ENSMUST00000171751.10	known	0.28	5	13	5	13	y	0.15	2	11	2	11	y	0.08	3	35	3	35	y	0.06	1	17	1	17	n	0.11	4	33	4	33	y	0.00	0	20	0	20	n	0.14	3	19	3	19	y	0.17	4	19	4	19	y	0.17	2	10	2	10	y	0.11	4	32	4	32	y	0.00	0	11	0	11	n	0.10	3	27	3	27	y	ENSMUSG00000033565.19	Rbfox2	chr15	protein_coding	RNA binding protein, fox-1 homolog (C. elegans) 2
known_NIR_6470	chr15	77017141	77037730	-	77017141	77115587	A5SS	ENSMUST00000171751.10	known	1.00	2	0	2	0	n	0.25	1	3	1	3	n	0.00	0	13	0	13	n	0.33	4	8	4	8	y	0.36	4	7	4	7	y	0.06	1	15	1	15	n	0.47	7	8	7	8	y	0.20	2	8	2	8	y	0.00	0	10	0	10	n	0.11	1	8	1	8	n	0.00	0	3	0	3	n	0.30	3	7	3	7	y	ENSMUSG00000033565.19	Rbfox2	chr15	protein_coding	RNA binding protein, fox-1 homolog (C. elegans) 2
known_NIR_6471	chr15	77017141	77087562	-	77017141	77115587	A5SS	ENSMUST00000171751.10	known	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.07	1	13	1	13	n	0.11	1	8	1	8	n	0.22	2	7	2	7	n	0.00	0	15	0	15	n	0.11	1	8	1	8	n	0.20	2	8	2	8	y	0.23	3	10	3	10	y	0.11	1	8	1	8	n	0.40	2	3	2	3	n	0.22	2	7	2	7	n	ENSMUSG00000033565.19	Rbfox2	chr15	protein_coding	RNA binding protein, fox-1 homolog (C. elegans) 2
known_NIR_6472	chr15	77017141	77190564	-	77017141	77037730	5pMXE	ENSMUST00000166610.8	known	0.60	3	2	3	2	n	0.75	3	1	3	1	n	1.00	1	0	1	0	n	0.33	2	4	2	4	n	0.60	6	4	6	4	y	0.75	3	1	3	1	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	1.00	3	0	3	0	n	0.00	0	1	0	1	n	1.00	2	0	2	0	n	0.57	4	3	4	3	n	ENSMUSG00000033565.19	Rbfox2	chr15	protein_coding	RNA binding protein, fox-1 homolog (C. elegans) 2
known_NIR_6473	chr15	77017141	77190564	-	77017141;77115637	77115587;77190564	ES	ENSMUST00000171751.10	known	1.00	3	0.0	3	0;0	n	0.60	3	2.0	3	3;1	n	0.08	1	11.5	1	13;10	n	0.20	2	8.0	2	8;8	y	0.46	6	7.0	6	7;7	y	0.20	3	12.0	3	15;9	y	0.00	0	7.5	0	8;7	n	0.00	0	7.0	0	8;6	n	0.30	3	7.0	3	10;4	y	0.00	0	8.5	0	8;9	n	0.44	2	2.5	2	3;2	n	0.36	4	7.0	4	7;7	y	ENSMUSG00000033565.19	Rbfox2	chr15	protein_coding	RNA binding protein, fox-1 homolog (C. elegans) 2
known_NIR_6474	chr15	77280517	77282515	-	77280517	77280607	A5SS&ES	ENSMUST00000176074.9	known	0.03	3	93	3	93	y	0.03	2	59	2	59	y	0.00	0	13	0	13	n	0.05	7	123	7	123	y	0.04	4	96	4	96	y	0.00	0	16	0	16	n	0.04	4	100	4	100	y	0.00	0	28	0	28	n	0.03	3	102	3	102	y	0.02	3	169	3	169	y	0.01	1	123	1	123	n	0.00	0	141	0	141	n	ENSMUSG00000010601.15	Apol7a	chr15	protein_coding	apolipoprotein L 7a
known_NIR_6475	chr15	77280517	77282515	-	77280517	77283138	A5SS	ENSMUST00000175919.8	known	0.04	3	79	3	79	y	0.04	2	53	2	53	y	0.00	0	2	0	2	n	0.06	7	101	7	101	y	0.05	4	84	4	84	y	0.00	0	9	0	9	n	0.06	4	59	4	59	y	0.00	0	25	0	25	n	0.04	3	80	3	80	y	0.03	3	113	3	113	y	0.01	1	66	1	66	n	0.00	0	101	0	101	n	ENSMUSG00000010601.15	Apol7a	chr15	protein_coding	apolipoprotein L 7a
known_NIR_6476	chr15	77280517	77283138	-	77280517	77280607	5pMXE	ENSMUST00000010745.13	known	0.46	79	93	79	93	y	0.47	53	59	53	59	y	0.13	2	13	2	13	y	0.45	101	123	101	123	y	0.47	84	96	84	96	y	0.36	9	16	9	16	y	0.37	59	100	59	100	y	0.47	25	28	25	28	y	0.44	80	102	80	102	y	0.40	113	169	113	169	y	0.35	66	123	66	123	y	0.42	101	141	101	141	y	ENSMUSG00000010601.15	Apol7a	chr15	protein_coding	apolipoprotein L 7a
known_NIR_6477	chr15	77280517	77283138	-	77280517;77280706	77280607;77283138	ES	ENSMUST00000176074.9	known	0.49	79	83.0	79	93;73	y	0.51	53	50.0	53	59;41	y	0.17	2	9.5	2	13;6	y	0.49	101	106.0	101	123;89	y	0.50	84	85.5	84	96;75	y	0.38	9	15.0	9	16;14	y	0.42	59	81.0	59	100;62	y	0.51	25	24.5	25	28;21	y	0.47	80	89.0	80	102;76	y	0.42	113	153.0	113	169;137	y	0.39	66	102.0	66	123;81	y	0.46	101	119.5	101	141;98	y	ENSMUSG00000010601.15	Apol7a	chr15	protein_coding	apolipoprotein L 7a
known_NIR_6478	chr15	77289906	77290587	-	77289906	77295128	A5SS	ENSMUST00000089452.6	known	0.24	9	28	9	28	y	0.04	1	24	1	24	n	0.25	2	6	2	6	n	0.10	6	52	6	52	y	0.04	1	22	1	22	n	0.00	0	1	0	1	n	0.06	1	17	1	17	n	0.33	2	4	2	4	n	0.10	5	43	5	43	y	0.06	3	47	3	47	y	0.00	0	28	0	28	n	0.15	10	58	10	58	y	ENSMUSG00000057346.13	Apol9a	chr15	protein_coding	apolipoprotein L 9a
known_NIR_6479	chr15	77289906	77290587	-	77289906	77295226	A5SS	ENSMUST00000081776.11	known	0.24	9	29	9	29	y	0.04	1	25	1	25	n	0.20	2	8	2	8	y	0.09	6	58	6	58	y	0.05	1	18	1	18	n	-	-	-	-	-	-	0.06	1	15	1	15	n	0.18	2	9	2	9	y	0.13	5	33	5	33	y	0.06	3	47	3	47	y	0.00	0	35	0	35	n	0.17	10	48	10	48	y	ENSMUSG00000057346.13	Apol9a	chr15	protein_coding	apolipoprotein L 9a
known_NIR_6480	chr15	77289906	77295226	-	77289906	77295128	A5SS	ENSMUST00000089452.6	known	0.51	29	28	29	28	y	0.51	25	24	25	24	y	0.57	8	6	8	6	y	0.53	58	52	58	52	y	0.45	18	22	18	22	y	0.00	0	1	0	1	n	0.47	15	17	15	17	y	0.69	9	4	9	4	y	0.43	33	43	33	43	y	0.50	47	47	47	47	y	0.56	35	28	35	28	y	0.45	48	58	48	58	y	ENSMUSG00000057346.13	Apol9a	chr15	protein_coding	apolipoprotein L 9a
known_NIR_6481	chr15	77613446	77618665	+	77613348	77618665	A5SS	ENSMUST00000230979.2	known	0.54	73	63	73	63	y	0.57	52	39	52	39	y	0.66	19	10	19	10	y	0.55	111	92	111	92	y	0.70	56	24	56	24	y	0.00	0	2	0	2	n	0.66	46	24	46	24	y	0.86	6	1	6	1	n	0.63	102	61	102	61	y	0.59	108	76	108	76	y	0.46	74	86	74	86	y	0.59	123	85	123	85	y	ENSMUSG00000068246.7	Apol9b	chr15	protein_coding	apolipoprotein L 9b
known_NIR_6482	chr15	77613446	77618665	+	77617996	77618665	5pMXE	ENSMUST00000230377.2	known	0.68	73	35	73	35	y	0.67	52	26	52	26	y	0.54	19	16	19	16	y	0.62	111	68	111	68	y	0.78	56	16	56	16	y	0.00	0	1	0	1	n	0.72	46	18	46	18	y	0.75	6	2	6	2	n	0.71	102	41	102	41	y	0.69	108	48	108	48	y	0.62	74	46	74	46	y	0.71	123	51	123	51	y	ENSMUSG00000068246.7	Apol9b	chr15	protein_coding	apolipoprotein L 9b
known_NIR_6483	chr15	77613446;77617996	77617826;77618665	+	77613446	77618665	cassetteExon	ENSMUST00000109775.4	known	0.20	18.5	73	2;35	73	y	0.21	14.0	52	2;26	52	y	0.30	8.0	19	0;16	19	n	0.24	35.0	111	2;68	111	y	0.12	8.0	56	0;16	56	n	1.00	0.5	0	0;1	0	n	0.19	11.0	46	4;18	46	y	0.20	1.5	6	1;2	6	n	0.19	23.5	102	6;41	102	y	0.18	24.0	108	0;48	108	n	0.24	23.0	74	0;46	74	n	0.19	28.5	123	6;51	123	y	ENSMUSG00000068246.7	Apol9b	chr15	protein_coding	apolipoprotein L 9b
known_NIR_6484	chr15	77617996	77618665	+	77613348	77618665	A5SS	ENSMUST00000230979.2	known	0.36	35	63	35	63	y	0.40	26	39	26	39	y	0.62	16	10	16	10	y	0.42	68	92	68	92	y	0.40	16	24	16	24	y	0.33	1	2	1	2	n	0.43	18	24	18	24	y	0.67	2	1	2	1	n	0.40	41	61	41	61	y	0.39	48	76	48	76	y	0.35	46	86	46	86	y	0.38	51	85	51	85	y	ENSMUSG00000068246.7	Apol9b	chr15	protein_coding	apolipoprotein L 9b
known_NIR_6485	chr15	77799436	77799905	-	77799436	77799825	5pMXE	ENSMUST00000173561.8	known	0.44	28	35	28	35	y	0.51	33	32	33	32	y	0.36	16	29	16	29	y	0.39	22	34	22	34	y	0.51	36	35	36	35	y	0.31	11	25	11	25	y	0.41	28	41	28	41	y	0.34	18	35	18	35	y	0.71	48	20	48	20	y	0.44	51	65	51	65	y	0.51	38	36	38	36	y	0.51	50	48	50	48	y	ENSMUSG00000005354.17	Txn2	chr15	protein_coding	thioredoxin 2
known_NIR_6486	chr15	77804046	77808743	-	77800057	77808743	A3SS	ENSMUST00000173631.8	known	0.00	0	869	0	869	n	0.00	0	920	0	920	n	0.00	1	811	1	811	n	0.00	0	911	0	911	n	0.00	2	981	2	981	y	0.00	1	484	1	484	n	0.00	3	1087	3	1087	y	0.00	0	495	0	495	n	0.00	0	834	0	834	n	0.00	0	1167	0	1167	n	0.00	0	1021	0	1021	n	0.00	0	1048	0	1048	n	ENSMUSG00000005354.17	Txn2	chr15	protein_coding	thioredoxin 2
known_NIR_6487	chr15	77810919	77811892	-	77808866	77811892	A3SS	ENSMUST00000173631.8	known	0.00	3	663	3	663	y	0.01	5	758	5	758	y	0.02	14	650	14	650	y	0.01	4	739	4	739	y	0.01	7	906	7	906	y	0.05	19	377	19	377	y	0.00	3	849	3	849	y	0.00	0	367	0	367	n	0.01	4	602	4	602	y	0.01	9	937	9	937	y	0.01	8	774	8	774	y	0.01	5	856	5	856	y	ENSMUSG00000005354.17	Txn2	chr15	protein_coding	thioredoxin 2
known_NIR_6488	chr15	77852789	77854659	-	77852789	77854883	A5SS	ENSMUST00000100484.6	known	0.04	4	103	4	103	y	0.11	9	76	9	76	y	0.08	15	168	15	168	y	0.01	1	107	1	107	n	0.06	9	152	9	152	y	0.03	2	73	2	73	y	0.07	11	142	11	142	y	0.07	6	81	6	81	y	0.01	1	116	1	116	n	0.03	4	122	4	122	y	0.06	6	96	6	96	y	0.04	5	130	5	130	y	ENSMUSG00000016554.10	Eif3d	chr15	protein_coding	eukaryotic translation initiation factor 3, subunit D
known_NIR_6489	chr15	78291063	78294243	+	78290944	78294243	A5SS	ENSMUST00000229791.2	known	0.35	9	17	9	17	y	0.25	6	18	6	18	y	0.50	9	9	9	9	y	0.50	16	16	16	16	y	0.26	13	37	13	37	y	1.00	10	0	10	0	n	0.47	20	23	20	23	y	0.24	4	13	4	13	y	0.56	23	18	23	18	y	0.65	35	19	35	19	y	0.54	15	13	15	13	y	0.24	10	31	10	31	y	ENSMUSG00000071711.13	Mpst	chr15	protein_coding	mercaptopyruvate sulfurtransferase
known_NIR_6490	chr15	78291063	78294243	+	78291470	78294243	A5SS	ENSMUST00000043865.8	known	0.50	9	9	9	9	y	0.43	6	8	6	8	y	0.82	9	2	9	2	y	0.70	16	7	16	7	y	0.48	13	14	13	14	y	0.77	10	3	10	3	y	0.49	20	21	20	21	y	0.33	4	8	4	8	y	0.70	23	10	23	10	y	0.78	35	10	35	10	y	0.60	15	10	15	10	y	0.42	10	14	10	14	y	ENSMUSG00000071711.13	Mpst	chr15	protein_coding	mercaptopyruvate sulfurtransferase
known_NIR_6491	chr15	78291470	78294243	+	78290944	78294243	A5SS	ENSMUST00000229791.2	known	0.35	9	17	9	17	y	0.31	8	18	8	18	y	0.18	2	9	2	9	y	0.30	7	16	7	16	y	0.27	14	37	14	37	y	1.00	3	0	3	0	n	0.48	21	23	21	23	y	0.38	8	13	8	13	y	0.36	10	18	10	18	y	0.34	10	19	10	19	y	0.43	10	13	10	13	y	0.31	14	31	14	31	y	ENSMUSG00000071711.13	Mpst	chr15	protein_coding	mercaptopyruvate sulfurtransferase
known_NIR_6492	chr15	78319910	78322687	+	78319910	78321101	3pMXE	ENSMUST00000160916.8	known	0.15	2	11	2	11	y	0.00	0	9	0	9	n	0.05	1	21	1	21	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.80	4	1	4	1	n	0.17	1	5	1	5	n	0.67	2	1	2	1	n	0.29	2	5	2	5	n	ENSMUSG00000033287.17	Kctd17	chr15	protein_coding	potassium channel tetramerisation domain containing 17
known_NIR_6493	chr15	78326753	78328296	-	78326753;78328045	78327877;78328296	ES	ENSMUST00000017086.5	known	0.00	0	890.5	0	906;875	n	0.00	0	888.0	0	846;930	n	0.00	0	228.0	0	203;253	n	0.00	0	875.5	0	813;938	n	0.00	2	958.0	2	857;1059	y	0.00	0	205.0	0	187;223	n	0.00	5	1011.5	5	983;1040	y	0.00	1	303.0	1	274;332	n	0.00	0	815.0	0	800;830	n	0.00	3	1262.0	3	1162;1362	y	0.00	2	971.5	2	933;1010	y	0.00	3	1021.5	3	967;1076	y	ENSMUSG00000016942.7	Tmprss6	chr15	protein_coding	transmembrane serine protease 6
known_NIR_6494	chr15	78326753	78328296	-	78328031	78328296	3pMXE	ENSMUST00000230159.2	known	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.20	2	8	2	8	y	-	-	-	-	-	-	0.42	5	7	5	7	y	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.20	3	12	3	12	y	0.20	2	8	2	8	y	0.25	3	9	3	9	y	ENSMUSG00000016942.7	Tmprss6	chr15	protein_coding	transmembrane serine protease 6
known_NIR_6495	chr15	78326753	78328296	-	78328045	78328296	3pMXE	ENSMUST00000230473.2	known	0.00	0	875	0	875	n	0.00	0	930	0	930	n	0.00	0	253	0	253	n	0.00	0	938	0	938	n	0.00	2	1059	2	1059	y	0.00	0	223	0	223	n	0.00	5	1040	5	1040	y	0.00	1	332	1	332	n	0.00	0	830	0	830	n	0.00	3	1362	3	1362	y	0.00	2	1010	2	1010	y	0.00	3	1076	3	1076	y	ENSMUSG00000016942.7	Tmprss6	chr15	protein_coding	transmembrane serine protease 6
known_NIR_6496	chr15	78326753;78328031	78327877;78328296	-	78326753	78328296	cassetteExon	ENSMUST00000229516.2	known	1.00	453.0	0	906;0	0	n	1.00	425.0	0	846;4	0	n	1.00	101.5	0	203;0	0	n	1.00	410.0	0	813;7	0	n	1.00	432.5	2	857;8	2	y	1.00	93.5	0	187;0	0	n	0.99	495.0	5	983;7	5	y	0.99	138.5	1	274;3	1	n	1.00	402.5	0	800;5	0	n	0.99	587.0	3	1162;12	3	y	1.00	470.5	2	933;8	2	y	0.99	488.0	3	967;9	3	y	ENSMUSG00000016942.7	Tmprss6	chr15	protein_coding	transmembrane serine protease 6
known_NIR_6497	chr15	78328031	78328296	-	78328045	78328296	A3SS	ENSMUST00000017086.5	known	0.00	0	875	0	875	n	0.00	4	930	4	930	y	0.00	0	253	0	253	n	0.01	7	938	7	938	y	0.01	8	1059	8	1059	y	0.00	0	223	0	223	n	0.01	7	1040	7	1040	y	0.01	3	332	3	332	y	0.01	5	830	5	830	y	0.01	12	1362	12	1362	y	0.01	8	1010	8	1010	y	0.01	9	1076	9	1076	y	ENSMUSG00000016942.7	Tmprss6	chr15	protein_coding	transmembrane serine protease 6
known_NIR_6498	chr15	78349508	78352626	-	78349543	78352626	A3SS	ENSMUST00000017086.5	known	0.23	111	375	111	375	y	0.25	87	260	87	260	y	0.28	52	134	52	134	y	0.24	147	476	147	476	y	0.26	170	495	170	495	y	0.29	48	120	48	120	y	0.23	132	450	132	450	y	0.28	73	192	73	192	y	0.20	95	379	95	379	y	0.21	172	639	172	639	y	0.21	108	413	108	413	y	0.23	164	554	164	554	y	ENSMUSG00000016942.7	Tmprss6	chr15	protein_coding	transmembrane serine protease 6
known_NIR_6499	chr15	78777552	78777739	+	78777536	78777739	A5SS	ENSMUST00000041587.8	known	0.00	0	92	0	92	n	0.02	2	104	2	104	y	0.01	1	114	1	114	n	0.00	0	93	0	93	n	0.01	1	98	1	98	n	0.00	0	63	0	63	n	0.00	0	117	0	117	n	0.04	2	49	2	49	y	0.01	1	88	1	88	n	0.00	0	114	0	114	n	0.00	0	105	0	105	n	0.00	0	91	0	91	n	ENSMUSG00000033128.10	Gga1	chr15	protein_coding	golgi associated, gamma adaptin ear containing, ARF binding protein 1
known_NIR_6500	chr15	78812249;78812867	78812765;78813833	+	78812249	78813833	cassetteExon	ENSMUST00000089377.6	known	0.00	0.0	99	0;0	99	n	0.00	0.0	80	0;0	80	n	0.01	0.5	47	1;0	47	n	0.01	1.5	114	0;3	114	n	0.00	0.0	89	0;0	89	n	0.01	0.5	33	0;1	33	n	0.00	0.0	280	0;0	280	n	0.00	0.0	22	0;0	22	n	0.00	0.0	54	0;0	54	n	0.00	0.5	232	0;1	232	n	0.02	2.0	110	2;2	110	y	0.00	0.0	46	0;0	46	n	ENSMUSG00000068220.7	Lgals1	chr15	protein_coding	lectin, galactose binding, soluble 1
known_NIR_6501	chr15	78819894	78820679	+	78819275	78820679	A5SS	ENSMUST00000138880.9	known	0.22	13	45	13	45	y	0.27	18	48	18	48	y	0.16	13	70	13	70	y	0.06	3	49	3	49	y	0.29	21	51	21	51	y	0.11	4	32	4	32	y	0.34	25	48	25	48	y	0.17	5	24	5	24	y	0.28	11	29	11	29	y	0.25	14	42	14	42	y	0.29	12	30	12	30	y	0.18	10	47	10	47	y	ENSMUSG00000033099.11	Nol12	chr15	protein_coding	nucleolar protein 12
known_NIR_6502	chr15	78819894;78820099	78820009;78820679	+	78819894	78820679	cassetteExon	ENSMUST00000145157.2	known	0.19	3.0	13	2;4	13	y	0.25	6.0	18	7;5	18	y	0.38	8.0	13	3;13	13	y	0.68	6.5	3	4;9	3	y	0.29	8.5	21	5;12	21	y	0.58	5.5	4	3;8	4	y	0.40	16.5	25	17;16	25	y	0.64	9.0	5	8;10	5	y	0.27	4.0	11	3;5	11	y	0.45	11.5	14	9;14	14	y	0.48	11.0	12	12;10	12	y	0.49	9.5	10	11;8	10	y	ENSMUSG00000033099.11	Nol12	chr15	protein_coding	nucleolar protein 12
known_NIR_6503	chr15	78820099	78820679	+	78819275	78820679	A5SS	ENSMUST00000138880.9	known	0.08	4	45	4	45	y	0.09	5	48	5	48	y	0.16	13	70	13	70	y	0.16	9	49	9	49	y	0.19	12	51	12	51	y	0.20	8	32	8	32	y	0.25	16	48	16	48	y	0.29	10	24	10	24	y	0.15	5	29	5	29	y	0.25	14	42	14	42	y	0.25	10	30	10	30	y	0.15	8	47	8	47	y	ENSMUSG00000033099.11	Nol12	chr15	protein_coding	nucleolar protein 12
known_NIR_6504	chr15	78878352	78878498	+	78878352	78883997	A3SS	ENSMUST00000109689.9	known	0.11	4	34	4	34	y	0.11	4	31	4	31	y	0.12	3	22	3	22	y	0.08	3	34	3	34	y	0.13	7	45	7	45	y	0.21	4	15	4	15	y	0.08	3	33	3	33	y	0.19	4	17	4	17	y	0.23	7	23	7	23	y	0.04	2	48	2	48	y	0.07	2	28	2	28	y	0.17	5	24	5	24	y	ENSMUSG00000033088.20	Triobp	chr15	protein_coding	TRIO and F-actin binding protein
known_NIR_6505	chr15	78901332	78907681	-	78901332	78909696	A5SS	ENSMUST00000229708.2	known	0.03	1	38	1	38	n	0.04	1	23	1	23	n	0.00	0	10	0	10	n	0.06	2	32	2	32	y	0.02	1	56	1	56	n	0.00	0	12	0	12	n	0.09	5	49	5	49	y	0.00	0	26	0	26	n	0.00	0	32	0	32	n	0.00	0	33	0	33	n	0.02	1	55	1	55	n	0.02	1	51	1	51	n	ENSMUSG00000115867.2	Gm17753	chr15	lncRNA	predicted gene, 17753
known_NIR_6506	chr15	78921074	78926128	+	78921074	78921343	3pMXE	ENSMUST00000006544.9	known	0.00	0	285	0	285	n	0.00	0	286	0	286	n	0.00	0	70	0	70	n	0.00	0	221	0	221	n	0.00	0	239	0	239	n	0.00	0	90	0	90	n	0.01	2	277	2	277	y	0.00	0	88	0	88	n	0.00	0	239	0	239	n	0.00	0	352	0	352	n	0.00	0	310	0	310	n	0.00	0	372	0	372	n	ENSMUSG00000006378.16	Gcat	chr15	protein_coding	glycine C-acetyltransferase (2-amino-3-ketobutyrate-coenzyme A ligase)
known_NIR_6507	chr15	78938284;78938514	78938466;78938696	-	78938284	78938696	cassetteExon	ENSMUST00000040676.11	known	0.10	2.5	22	3;2	22	y	0.07	1.5	20	0;3	20	n	0.06	1.5	25	2;1	25	n	0.07	2.0	26	1;3	26	n	0.11	2.5	20	3;2	20	y	0.20	1.5	6	1;2	6	n	0.11	2.5	20	3;2	20	y	0.00	0.0	12	0;0	12	n	0.11	2.0	16	3;1	16	n	0.08	2.0	23	2;2	23	y	0.16	3.0	16	2;4	16	y	0.15	4.0	22	4;4	22	y	ENSMUSG00000033055.13	Ankrd54	chr15	protein_coding	ankyrin repeat domain 54
known_NIR_6508	chr15	78938827	78939492	-	78938803	78939492	A3SS	ENSMUST00000040676.11	known	0.00	0	34	0	34	n	0.07	2	25	2	25	y	0.00	0	32	0	32	n	0.00	0	26	0	26	n	0.00	0	41	0	41	n	0.06	1	15	1	15	n	0.03	1	30	1	30	n	0.00	0	24	0	24	n	0.06	2	30	2	30	y	0.12	4	29	4	29	y	0.00	0	29	0	29	n	0.00	0	17	0	17	n	ENSMUSG00000033055.13	Ankrd54	chr15	protein_coding	ankyrin repeat domain 54
known_NIR_6509	chr15	78942248	78945364	-	78942253	78945364	A3SS	ENSMUST00000040676.11	known	0.08	2	24	2	24	y	0.13	2	13	2	13	y	0.05	1	19	1	19	n	0.00	0	14	0	14	n	0.10	3	27	3	27	y	0.00	0	16	0	16	n	0.00	0	25	0	25	n	0.14	2	12	2	12	y	0.00	0	12	0	12	n	0.04	1	24	1	24	n	0.11	2	17	2	17	y	0.03	1	37	1	37	n	ENSMUSG00000033055.13	Ankrd54	chr15	protein_coding	ankyrin repeat domain 54
known_NIR_6510	chr15	78999371	79004959	+	78999371;79004027	79003936;79004959	ES	ENSMUST00000040320.10	known	0.00	0	2.5	0	1;4	n	0.40	2	3.0	2	2;4	n	0.38	4	6.5	4	5;8	y	0.29	2	5.0	2	4;6	y	0.55	6	5.0	6	5;5	y	0.00	0	2.0	0	1;3	n	0.31	2	4.5	2	6;3	y	0.29	1	2.5	1	3;2	n	0.20	1	4.0	1	3;5	n	0.59	8	5.5	8	7;4	y	0.13	1	6.5	1	7;6	n	0.53	5	4.5	5	3;6	y	ENSMUSG00000033039.11	Micall1	chr15	protein_coding	microtubule associated monooxygenase, calponin and LIM domain containing -like 1
known_NIR_6511	chr15	79006987	79008701	+	79007186	79008701	A5SS	ENSMUST00000229113.2	known	0.27	3	8	3	8	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.20	1	4	1	4	n	0.00	0	6	0	6	n	0.20	2	8	2	8	y	0.00	0	4	0	4	n	0.25	2	6	2	6	n	ENSMUSG00000033039.11	Micall1	chr15	protein_coding	microtubule associated monooxygenase, calponin and LIM domain containing -like 1
known_NIR_6512	chr15	79030338	79035536	+	79030383	79035536	A5SS	ENSMUST00000230271.2	known	0.00	0	140	0	140	n	0.03	6	168	6	168	y	0.03	5	154	5	154	y	0.00	0	135	0	135	n	0.03	6	174	6	174	y	0.00	0	101	0	101	n	0.03	6	170	6	170	y	0.01	1	87	1	87	n	0.01	1	131	1	131	n	0.01	2	153	2	153	y	0.02	3	189	3	189	y	0.07	10	139	10	139	y	ENSMUSG00000033020.8	Polr2f	chr15	protein_coding	polymerase (RNA) II (DNA directed) polypeptide F
known_NIR_6513	chr15	79035673	79035789	+	79035607	79035789	A5SS	ENSMUST00000230271.2	known	0.00	0	169	0	169	n	0.02	3	194	3	194	y	0.00	0	160	0	160	n	0.00	0	163	0	163	n	0.00	0	165	0	165	n	0.00	0	100	0	100	n	0.00	1	208	1	208	n	0.01	1	74	1	74	n	0.02	2	127	2	127	y	0.00	0	232	0	232	n	0.01	2	185	2	185	y	0.01	1	171	1	171	n	ENSMUSG00000033020.8	Polr2f	chr15	protein_coding	polymerase (RNA) II (DNA directed) polypeptide F
known_NIR_6514	chr15	79113770	79113950	+	79113620	79113950	A5SS	ENSMUST00000163571.8	known	1.00	20	0	20	0	n	0.94	15	1	15	1	n	0.98	43	1	43	1	n	0.94	34	2	34	2	y	1.00	46	0	46	0	n	0.94	32	2	32	2	y	1.00	31	0	31	0	n	1.00	34	0	34	0	n	0.93	25	2	25	2	y	0.97	34	1	34	1	n	1.00	17	0	17	0	n	1.00	42	0	42	0	n	ENSMUSG00000068206.14	Pick1	chr15	protein_coding	protein interacting with C kinase 1
known_NIR_6515	chr15	79123912	79127168	+	79123912	79125427	3pMXE	ENSMUST00000171365.2	known	0.07	3	43	3	43	y	0.00	0	23	0	23	n	0.06	4	67	4	67	y	0.05	2	38	2	38	y	0.00	0	49	0	49	n	0.00	0	28	0	28	n	0.05	3	52	3	52	y	0.02	1	40	1	40	n	0.00	0	35	0	35	n	0.02	1	52	1	52	n	0.05	2	36	2	36	y	0.00	0	49	0	49	n	ENSMUSG00000068206.14	Pick1	chr15	protein_coding	protein interacting with C kinase 1
known_NIR_6516	chr15	79123912	79127168	+	79123912;79125493	79125427;79127168	ES	ENSMUST00000163571.8	known	0.07	3	42.5	3	43;42	y	0.00	0	24.5	0	23;26	n	0.06	4	66.5	4	67;66	y	0.05	2	41.0	2	38;44	y	0.00	0	53.0	0	49;57	n	0.00	0	32.5	0	28;37	n	0.06	3	50.0	3	52;48	y	0.02	1	41.0	1	40;42	n	0.00	0	33.5	0	35;32	n	0.02	1	52.0	1	52;52	n	0.05	2	36.5	2	36;37	y	0.00	0	44.0	0	49;39	n	ENSMUSG00000068206.14	Pick1	chr15	protein_coding	protein interacting with C kinase 1
known_NIR_6517	chr15	79186897	79187774	-	79186897	79189903	A5SS	ENSMUST00000166977.9	known	0.03	1	28	1	28	n	0.00	0	38	0	38	n	0.04	2	54	2	54	y	0.04	2	51	2	51	y	0.00	0	63	0	63	n	0.00	0	42	0	42	n	0.03	1	33	1	33	n	0.00	0	41	0	41	n	0.00	0	41	0	41	n	0.00	0	80	0	80	n	0.00	0	66	0	66	n	0.02	1	48	1	48	n	ENSMUSG00000042632.18	Pla2g6	chr15	protein_coding	phospholipase A2, group VI
known_NIR_6518	chr15	79186897	79189903	-	79186897;79188669	79188505;79189903	ES	ENSMUST00000174021.8	known	0.90	28	3.0	28	6;0	n	0.94	38	2.5	38	3;2	y	0.81	54	12.5	54	17;8	y	0.94	51	3.5	51	4;3	y	0.92	63	5.5	63	6;5	y	0.89	42	5.0	42	8;2	y	0.94	33	2.0	33	1;3	n	0.86	41	6.5	41	12;1	n	0.93	41	3.0	41	3;3	y	0.91	80	7.5	80	10;5	y	0.94	66	4.5	66	7;2	y	0.92	48	4.0	48	2;6	y	ENSMUSG00000042632.18	Pla2g6	chr15	protein_coding	phospholipase A2, group VI
known_NIR_6519	chr15	79202210	79207475	-	79202210	79211835	A5SS	ENSMUST00000174021.8	known	0.00	0	17	0	17	n	0.00	0	13	0	13	n	0.15	8	47	8	47	y	0.20	6	24	6	24	y	0.03	1	38	1	38	n	0.23	7	23	7	23	y	0.16	5	27	5	27	y	0.19	6	26	6	26	y	0.18	3	14	3	14	y	0.00	0	33	0	33	n	0.15	6	33	6	33	y	0.03	1	32	1	32	n	ENSMUSG00000042632.18	Pla2g6	chr15	protein_coding	phospholipase A2, group VI
known_NIR_6520	chr15	79202210	79207475	-	79202210	79212289	A5SS	ENSMUST00000047816.15	known	0.00	0	2	0	2	n	-	-	-	-	-	-	0.53	8	7	8	7	y	0.75	6	2	6	2	n	0.25	1	3	1	3	n	0.78	7	2	7	2	n	0.62	5	3	5	3	n	0.86	6	1	6	1	n	0.50	3	3	3	3	n	0.00	0	4	0	4	n	0.86	6	1	6	1	n	0.33	1	2	1	2	n	ENSMUSG00000042632.18	Pla2g6	chr15	protein_coding	phospholipase A2, group VI
known_NIR_6521	chr15	79202210	79212289	-	79202210	79211835	5pMXE	ENSMUST00000174021.8	known	0.11	2	17	2	17	y	0.00	0	13	0	13	n	0.13	7	47	7	47	y	0.08	2	24	2	24	y	0.07	3	38	3	38	y	0.08	2	23	2	23	y	0.10	3	27	3	27	y	0.04	1	26	1	26	n	0.18	3	14	3	14	y	0.11	4	33	4	33	y	0.03	1	33	1	33	n	0.06	2	32	2	32	y	ENSMUSG00000042632.18	Pla2g6	chr15	protein_coding	phospholipase A2, group VI
known_NIR_6522	chr15	79202210	79212289	-	79202210;79211914	79211835;79212289	ES	ENSMUST00000173163.8	known	0.17	2	9.5	2	17;2	y	0.00	0	7.0	0	13;1	n	0.22	7	24.5	7	47;2	y	0.13	2	13.0	2	24;2	y	0.13	3	20.0	3	38;2	y	0.15	2	11.5	2	23;0	n	0.15	3	16.5	3	27;6	y	0.07	1	13.5	1	26;1	n	0.29	3	7.5	3	14;1	n	0.20	4	16.5	4	33;0	n	0.06	1	16.5	1	33;0	n	0.11	2	16.0	2	32;0	n	ENSMUSG00000042632.18	Pla2g6	chr15	protein_coding	phospholipase A2, group VI
known_NIR_6523	chr15	79202210	79212410	-	79202210	79211835	5pMXE	ENSMUST00000174021.8	known	0.11	2	17	2	17	y	0.00	0	13	0	13	n	0.00	0	47	0	47	n	0.00	0	24	0	24	n	0.05	2	38	2	38	y	0.00	0	23	0	23	n	0.07	2	27	2	27	y	0.10	3	26	3	26	y	0.07	1	14	1	14	n	0.00	0	33	0	33	n	0.00	0	33	0	33	n	0.00	0	32	0	32	n	ENSMUSG00000042632.18	Pla2g6	chr15	protein_coding	phospholipase A2, group VI
known_NIR_6524	chr15	79231954	79241167	+	79230974	79241167	A5SS	ENSMUST00000229130.2	known	1.00	1	0	1	0	n	1.00	2	0	2	0	n	0.84	16	3	16	3	y	1.00	3	0	3	0	n	1.00	5	0	5	0	n	1.00	3	0	3	0	n	1.00	7	0	7	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	10	0	10	0	n	1.00	5	0	5	0	n	1.00	6	0	6	0	n	ENSMUSG00000042622.15	Maff	chr15	protein_coding	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)
known_NIR_6525	chr15	79232446	79241167	+	79231954	79241167	A5SS	ENSMUST00000096350.11	known	0.50	1	1	1	1	n	0.67	4	2	4	2	n	0.11	2	16	2	16	y	0.70	7	3	7	3	y	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.22	2	7	2	7	n	0.00	0	1	0	1	n	1.00	9	0	9	0	n	0.17	2	10	2	10	y	0.55	6	5	6	5	y	0.33	3	6	3	6	n	ENSMUSG00000042622.15	Maff	chr15	protein_coding	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)
known_NIR_6526	chr15	79247085;79247878	79247858;79249485	-	79247085	79249485	cassetteExon	ENSMUST00000074991.10	known	0.00	0.0	22	0;0	22	n	0.00	0.0	23	0;0	23	n	0.00	0.0	39	0;0	39	n	0.00	0.0	56	0;0	56	n	0.00	0.0	40	0;0	40	n	0.00	0.0	29	0;0	29	n	0.10	4.5	42	5;4	42	y	0.00	0.0	18	0;0	18	n	0.00	0.0	26	0;0	26	n	0.00	0.0	52	0;0	52	n	0.00	0.0	32	0;0	32	n	0.00	0.0	45	0;0	45	n	ENSMUSG00000009035.16	Tmem184b	chr15	protein_coding	transmembrane protein 184b
known_NIR_6527	chr15	79308455	79309040	-	79305210	79309040	A3SS	ENSMUST00000117786.9	known	0.45	5	6	5	6	y	0.19	3	13	3	13	y	0.44	7	9	7	9	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.56	5	4	5	4	n	0.25	2	6	2	6	n	0.33	3	6	3	6	n	0.00	0	5	0	5	n	0.33	3	6	3	6	n	0.00	0	5	0	5	n	0.11	1	8	1	8	n	ENSMUSG00000022433.22	Csnk1e	chr15	protein_coding	casein kinase 1, epsilon
known_NIR_6528	chr15	79414718	79415879	-	79414718	79415873	A5SS	ENSMUST00000054014.9	known	0.63	101	59	101	59	y	0.71	101	42	101	42	y	0.72	140	54	140	54	y	0.69	124	55	124	55	y	0.65	172	91	172	91	y	0.75	76	25	76	25	y	0.67	140	70	140	70	y	0.65	86	46	86	46	y	0.66	90	47	90	47	y	0.69	118	53	118	53	y	0.73	113	42	113	42	y	0.62	138	83	138	83	y	ENSMUSG00000055065.8	Ddx17	chr15	protein_coding	DEAD box helicase 17
known_NIR_6529	chr15	79417411	79420158	-	79416115	79420158	A3SS	ENSMUST00000054014.9	known	0.09	7	74	7	74	y	0.15	7	39	7	39	y	0.05	6	110	6	110	y	0.07	6	80	6	80	y	0.09	14	150	14	150	y	0.19	8	34	8	34	y	0.09	12	125	12	125	y	0.15	7	39	7	39	y	0.14	11	68	11	68	y	0.17	16	80	16	80	y	0.08	6	70	6	70	y	0.16	19	101	19	101	y	ENSMUSG00000055065.8	Ddx17	chr15	protein_coding	DEAD box helicase 17
known_NIR_6530	chr15	79555209	79556098	+	79555209;79555492	79555374;79556098	ES	ENSMUST00000023062.5	known	0.00	1	234.5	1	228;241	n	0.02	5	248.0	5	222;274	y	0.03	8	260.0	8	224;296	y	0.01	2	219.0	2	198;240	y	0.02	5	306.0	5	296;316	y	0.01	1	157.0	1	148;166	n	0.01	4	301.5	4	292;311	y	0.02	4	158.5	4	143;174	y	0.03	7	212.5	7	196;229	y	0.02	7	306.0	7	289;323	y	0.03	7	248.0	7	229;267	y	0.02	5	254.5	5	234;275	y	ENSMUSG00000022427.5	Tomm22	chr15	protein_coding	translocase of outer mitochondrial membrane 22
known_NIR_6531	chr15	79555209	79556098	+	79555492	79556098	5pMXE	ENSMUST00000127292.2	known	0.00	1	241	1	241	n	0.02	5	274	5	274	y	0.03	8	296	8	296	y	0.01	2	240	2	240	y	0.02	5	316	5	316	y	0.01	1	166	1	166	n	0.01	4	311	4	311	y	0.02	4	174	4	174	y	0.03	7	229	7	229	y	0.02	7	323	7	323	y	0.03	7	267	7	267	y	0.02	5	275	5	275	y	ENSMUSG00000022427.5	Tomm22	chr15	protein_coding	translocase of outer mitochondrial membrane 22
known_NIR_6532	chr15	79597679	79600067	+	79597679	79600048	A3SS	ENSMUST00000046463.10	known	0.00	0	20	0	20	n	0.00	0	16	0	16	n	0.05	2	41	2	41	y	0.00	0	24	0	24	n	0.00	0	39	0	39	n	0.00	0	24	0	24	n	0.00	0	26	0	26	n	0.00	0	21	0	21	n	0.00	0	17	0	17	n	0.00	0	37	0	37	n	0.00	0	17	0	17	n	0.00	0	24	0	24	n	ENSMUSG00000042535.10	Gtpbp1	chr15	protein_coding	GTP binding protein 1
known_NIR_6533	chr15	79601974	79603268	+	79601974	79603229	A3SS	ENSMUST00000046463.10	known	0.11	4	32	4	32	y	0.00	0	41	0	41	n	0.00	0	40	0	40	n	0.00	0	44	0	44	n	0.00	0	40	0	40	n	0.00	0	21	0	21	n	0.00	0	53	0	53	n	0.00	0	24	0	24	n	0.00	0	28	0	28	n	0.00	0	45	0	45	n	0.00	0	45	0	45	n	0.00	0	47	0	47	n	ENSMUSG00000042535.10	Gtpbp1	chr15	protein_coding	GTP binding protein 1
known_NIR_6534	chr15	79620126	79621267	-	79620120	79621267	A3SS	ENSMUST00000162392.8	known	0.62	35	21	35	21	y	0.58	25	18	25	18	y	0.69	51	23	51	23	y	0.62	68	41	68	41	y	0.67	76	37	76	37	y	0.53	26	23	26	23	y	0.66	79	41	79	41	y	0.55	48	40	48	40	y	0.61	35	22	35	22	y	0.76	91	29	91	29	y	0.71	60	25	60	25	y	0.67	104	51	104	51	y	ENSMUSG00000042524.15	Sun2	chr15	protein_coding	Sad1 and UNC84 domain containing 2
known_NIR_6535	chr15	79621360	79622721	-	79621360;79621769	79621674;79622721	ES	ENSMUST00000162392.8	known	0.00	0	54.0	0	40;68	n	0.03	1	38.0	1	41;35	n	0.05	3	58.0	3	58;58	y	0.02	2	86.5	2	88;85	y	0.00	0	99.0	0	99;99	n	0.00	0	50.5	0	43;58	n	0.01	1	80.0	1	81;79	n	0.00	0	52.5	0	44;61	n	0.00	0	45.0	0	37;53	n	0.01	1	102.0	1	89;115	n	0.03	2	57.5	2	47;68	y	0.00	0	105.5	0	95;116	n	ENSMUSG00000042524.15	Sun2	chr15	protein_coding	Sad1 and UNC84 domain containing 2
known_NIR_6536	chr15	79624082	79626204	-	79624082	79626540	A5SS	ENSMUST00000162392.8	known	0.05	1	19	1	19	n	0.09	2	21	2	21	y	0.05	2	42	2	42	y	0.05	3	61	3	61	y	0.07	5	71	5	71	y	0.00	0	26	0	26	n	0.05	2	39	2	39	y	0.00	0	28	0	28	n	0.03	1	35	1	35	n	0.15	10	56	10	56	y	0.08	4	45	4	45	y	0.03	2	68	2	68	y	ENSMUSG00000042524.15	Sun2	chr15	protein_coding	Sad1 and UNC84 domain containing 2
known_NIR_6537	chr15	79646777	79647711	-	79646726	79647711	A3SS	ENSMUST00000069877.12	known	0.00	0	24	0	24	n	0.03	1	29	1	29	n	0.06	2	30	2	30	y	0.00	0	27	0	27	n	0.03	1	35	1	35	n	0.00	0	16	0	16	n	0.14	6	37	6	37	y	0.00	0	18	0	18	n	0.06	2	33	2	33	y	0.02	1	49	1	49	n	0.04	2	43	2	43	y	0.00	0	38	0	38	n	ENSMUSG00000022420.17	Dnal4	chr15	protein_coding	dynein, axonemal, light chain 4
known_NIR_6538	chr15	79649222;79650054	79649988;79658560	-	79649222	79658560	cassetteExon	ENSMUST00000069877.12	known	0.46	8.5	10	9;8	10	y	0.25	3.0	9	3;3	9	y	0.24	3.5	11	5;2	11	y	0.35	7.0	13	10;4	13	y	0.36	9.5	17	11;8	17	y	0.61	9.5	6	14;5	6	y	0.38	11.0	18	10;12	18	y	0.24	2.5	8	3;2	8	y	0.45	5.0	6	4;6	6	y	0.27	7.5	20	9;6	20	y	0.59	11.5	8	11;12	8	y	0.29	6.5	16	9;4	16	y	ENSMUSG00000022420.17	Dnal4	chr15	protein_coding	dynein, axonemal, light chain 4
known_NIR_6539	chr15	79962268	79963891	-	79963009	79963891	A3SS&ES	ENSMUST00000081650.15	known	0.00	0	1044	0	1044	n	0.00	0	1146	0	1146	n	0.00	0	1822	0	1822	n	0.00	0	904	0	904	n	0.00	0	1563	0	1563	n	0.05	56	1073	56	1073	y	0.06	89	1525	89	1525	y	0.00	0	856	0	856	n	0.05	50	955	50	955	y	0.00	0	1440	0	1440	n	0.06	89	1401	89	1401	y	0.07	100	1396	100	1396	y	ENSMUSG00000060036.15	Rpl3	chr15	protein_coding	ribosomal protein L3
known_NIR_6540	chr15	79965412	79965816	-	79965232	79965816	A3SS	ENSMUST00000081650.15	known	0.00	4	993	4	993	y	0.01	9	979	9	979	y	0.01	22	1867	22	1867	y	0.01	12	922	12	922	y	0.01	18	1722	18	1722	y	0.01	10	1057	10	1057	y	0.01	8	1550	8	1550	y	0.01	7	1044	7	1044	y	0.01	7	885	7	885	y	0.00	3	1445	3	1445	y	0.01	7	1221	7	1221	y	0.01	10	1392	10	1392	y	ENSMUSG00000060036.15	Rpl3	chr15	protein_coding	ribosomal protein L3
known_NIR_6541	chr15	80118382	80120006	+	80118981	80120006	A5SS&ES	ENSMUST00000230654.2	known	0.42	5	7	5	7	y	0.50	7	7	7	7	y	0.43	9	12	9	12	y	0.39	12	19	12	19	y	0.58	18	13	18	13	y	0.29	5	12	5	12	y	0.61	17	11	17	11	y	0.36	9	16	9	16	y	0.55	11	9	11	9	y	0.50	9	9	9	9	y	0.47	7	8	7	8	y	0.38	9	15	9	15	y	ENSMUSG00000022412.15	Mief1	chr15	protein_coding	mitochondrial elongation factor 1
known_NIR_6542	chr15	80118382;80118981	80118883;80120006	+	80118382	80120006	cassetteExon	ENSMUST00000023048.12	known	0.47	4.5	5	2;7	5	y	0.42	5.0	7	3;7	7	y	0.47	8.0	9	4;12	9	y	0.48	11.0	12	3;19	12	y	0.32	8.5	18	4;13	18	y	0.60	7.5	5	3;12	5	y	0.32	8.0	17	5;11	17	y	0.57	12.0	9	8;16	9	y	0.41	7.5	11	6;9	11	y	0.40	6.0	9	3;9	9	y	0.46	6.0	7	4;8	7	y	0.53	10.0	9	5;15	9	y	ENSMUSG00000022412.15	Mief1	chr15	protein_coding	mitochondrial elongation factor 1
known_NIR_6543	chr15	80118759	80118883	+	80118382	80118883	A5SS	ENSMUST00000229138.2	known	0.50	2	2	2	2	n	0.25	1	3	1	3	n	0.60	6	4	6	4	y	0.50	3	3	3	3	n	0.56	5	4	5	4	n	0.70	7	3	7	3	y	0.50	5	5	5	5	y	0.33	4	8	4	8	y	0.33	3	6	3	6	n	0.62	5	3	5	3	n	0.43	3	4	3	4	n	0.44	4	5	4	5	n	ENSMUSG00000022412.15	Mief1	chr15	protein_coding	mitochondrial elongation factor 1
known_NIR_6544	chr15	80118759	80120006	+	80118382	80120006	A5SS	ENSMUST00000023048.12	known	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.10	1	9	1	9	n	0.20	3	12	3	12	y	0.00	0	18	0	18	n	0.17	1	5	1	5	n	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.15	2	11	2	11	y	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	ENSMUSG00000022412.15	Mief1	chr15	protein_coding	mitochondrial elongation factor 1
known_NIR_6545	chr15	80118759	80120006	+	80118981	80120006	A5SS&ES	ENSMUST00000230654.2	known	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.08	1	12	1	12	n	0.14	3	19	3	19	y	0.00	0	13	0	13	n	0.08	1	12	1	12	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.18	2	9	2	9	y	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	15	0	15	n	ENSMUSG00000022412.15	Mief1	chr15	protein_coding	mitochondrial elongation factor 1
known_NIR_6546	chr15	80118759;80118981	80118883;80120006	+	80118759	80120006	cassetteExon	ENSMUST00000166030.2	known	1.00	4.5	0	2;7	0	n	1.00	4.0	0	1;7	0	n	0.90	9.0	1	6;12	1	n	0.79	11.0	3	3;19	3	y	1.00	9.0	0	5;13	0	n	0.90	9.5	1	7;12	1	n	1.00	8.0	0	5;11	0	n	1.00	10.0	0	4;16	0	n	0.75	6.0	2	3;9	2	y	1.00	7.0	0	5;9	0	n	1.00	5.5	0	3;8	0	n	1.00	9.5	0	4;15	0	n	ENSMUSG00000022412.15	Mief1	chr15	protein_coding	mitochondrial elongation factor 1
known_NIR_6547	chr15	80132252	80132528	+	80132252	80132442	A3SS	ENSMUST00000023048.12	known	0.24	4	13	4	13	y	0.40	4	6	4	6	y	0.13	4	26	4	26	y	0.23	5	17	5	17	y	0.18	6	27	6	27	y	0.64	7	4	7	4	y	0.17	5	24	5	24	y	0.20	5	20	5	20	y	0.15	3	17	3	17	y	0.35	8	15	8	15	y	0.17	3	15	3	15	y	0.21	5	19	5	19	y	ENSMUSG00000022412.15	Mief1	chr15	protein_coding	mitochondrial elongation factor 1
known_NIR_6548	chr15	80765407	80768408	+	80765407;80767303	80767145;80768408	ES	ENSMUST00000067689.9	known	0.55	6	5.0	6	5;5	y	0.00	0	4.5	0	4;5	n	0.35	8	15.0	8	21;9	y	0.33	4	8.0	4	4;12	y	0.15	2	11.0	2	14;8	y	0.10	1	9.0	1	10;8	n	0.25	2	6.0	2	8;4	y	0.29	2	5.0	2	2;8	y	0.00	0	3.0	0	1;5	n	0.37	5	8.5	5	8;9	y	0.00	0	5.0	0	4;6	n	0.38	3	5.0	3	2;8	y	ENSMUSG00000047888.11	Tnrc6b	chr15	protein_coding	trinucleotide repeat containing 6b
known_NIR_6549	chr15	80839865	80844596	+	80839865;80840493	80840414;80844596	ES	ENSMUST00000023043.10	known	0.05	2	39.0	2	38;40	y	0.03	1	34.5	1	27;42	n	0.08	5	56.5	5	49;64	y	0.03	2	57.0	2	57;57	y	0.00	0	53.5	0	49;58	n	0.00	0	36.5	0	36;37	n	0.03	2	57.5	2	56;59	y	0.00	0	25.5	0	25;26	n	0.06	2	33.5	2	38;29	y	0.06	3	51.5	3	44;59	y	0.02	1	40.5	1	39;42	n	0.02	1	43.0	1	41;45	n	ENSMUSG00000022407.11	Adsl	chr15	protein_coding	adenylosuccinate lyase
known_NIR_6550	chr15	80887719	80888005	+	80887646	80888005	A5SS	ENSMUST00000139517.9	known	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.10	2	19	2	19	y	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.00	0	14	0	14	n	0.00	0	14	0	14	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	ENSMUSG00000042303.20	Sgsm3	chr15	protein_coding	small G protein signaling modulator 3
known_NIR_6551	chr15	80888071	80888264	+	80888071	80890608	A3SS	ENSMUST00000139517.9	known	0.00	0	11	0	11	n	0.17	2	10	2	10	y	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	22	0	22	n	0.00	0	3	0	3	n	0.00	0	19	0	19	n	0.00	0	13	0	13	n	0.00	0	13	0	13	n	0.00	0	17	0	17	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	ENSMUSG00000042303.20	Sgsm3	chr15	protein_coding	small G protein signaling modulator 3
known_NIR_6552	chr15	80895723	80895860	+	80895723	80895857	A3SS	ENSMUST00000139517.9	known	0.00	0	16	0	16	n	0.00	0	27	0	27	n	0.20	5	20	5	20	y	0.00	0	16	0	16	n	0.00	0	31	0	31	n	0.00	0	14	0	14	n	0.00	0	23	0	23	n	0.00	0	11	0	11	n	0.00	0	18	0	18	n	0.00	0	15	0	15	n	0.00	0	19	0	19	n	0.00	0	23	0	23	n	ENSMUSG00000042303.20	Sgsm3	chr15	protein_coding	small G protein signaling modulator 3
known_NIR_6553	chr15	80929555	80988974	-	80929555	81001592	A5SS	ENSMUST00000134469.9	known	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.15	5	29	5	29	y	0.08	1	11	1	11	n	0.00	0	14	0	14	n	0.06	1	17	1	17	n	0.50	2	2	2	2	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	ENSMUSG00000042292.19	Mrtfa	chr15	protein_coding	myocardin related transcription factor A
known_NIR_6554	chr15	8122599	8123160	-	8112066	8123160	A3SS	ENSMUST00000045766.8	known	0.97	33	1	33	1	n	0.79	19	5	19	5	y	0.77	27	8	27	8	y	0.66	29	15	29	15	y	0.77	34	10	34	10	y	0.38	5	8	5	8	y	0.78	29	8	29	8	y	0.76	13	4	13	4	y	0.67	16	8	16	8	y	0.85	35	6	35	6	y	0.83	35	7	35	7	y	0.66	19	10	19	10	y	ENSMUSG00000039828.8	Wdr70	chr15	protein_coding	WD repeat domain 70
known_NIR_6555	chr15	81276523	81283508	-	81276523	81283686	A5SS	ENSMUST00000172107.8	known	0.00	0	145	0	145	n	0.00	0	100	0	100	n	0.00	0	191	0	191	n	0.00	0	238	0	238	n	0.00	0	244	0	244	n	0.00	0	85	0	85	n	0.02	3	171	3	171	y	0.00	0	81	0	81	n	0.00	0	160	0	160	n	0.00	0	207	0	207	n	0.00	0	156	0	156	n	0.00	0	232	0	232	n	ENSMUSG00000022403.16	St13	chr15	protein_coding	suppression of tumorigenicity 13
known_NIR_6556	chr15	81298749	81311477	+	81298749	81300048	3pMXE	ENSMUST00000166831.9	known	0.44	4	5	4	5	n	1.00	7	0	7	0	n	0.93	14	1	14	1	n	0.94	17	1	17	1	n	0.86	6	1	6	1	n	0.92	12	1	12	1	n	1.00	11	0	11	0	n	0.91	10	1	10	1	n	1.00	13	0	13	0	n	0.83	19	4	19	4	y	0.71	5	2	5	2	n	0.67	12	6	12	6	y	ENSMUSG00000022401.13	Xpnpep3	chr15	protein_coding	X-prolyl aminopeptidase 3, mitochondrial
known_NIR_6557	chr15	81298749;81300195	81300048;81311477	+	81298749	81311477	cassetteExon	ENSMUST00000163754.9	known	0.38	2.5	4	5;0	4	n	0.00	0.0	7	0;0	7	n	0.10	1.5	14	1;2	14	n	0.21	4.5	17	1;8	17	n	0.40	4.0	6	1;7	6	n	0.04	0.5	12	1;0	12	n	0.04	0.5	11	0;1	11	n	0.05	0.5	10	1;0	10	n	0.00	0.0	13	0;0	13	n	0.16	3.5	19	4;3	19	y	0.38	3.0	5	2;4	5	y	0.25	4.0	12	6;2	12	y	ENSMUSG00000022401.13	Xpnpep3	chr15	protein_coding	X-prolyl aminopeptidase 3, mitochondrial
known_NIR_6558	chr15	81298749;81300195	81300104;81311477	+	81298749	81311477	cassetteExon	ENSMUST00000163754.9	known	0.00	0.0	4	0;0	4	n	0.00	0.0	7	0;0	7	n	0.07	1.0	14	0;2	14	n	0.19	4.0	17	0;8	17	n	0.37	3.5	6	0;7	6	n	0.00	0.0	12	0;0	12	n	0.04	0.5	11	0;1	11	n	0.00	0.0	10	0;0	10	n	0.00	0.0	13	0;0	13	n	0.12	2.5	19	2;3	19	y	0.29	2.0	5	0;4	5	n	0.08	1.0	12	0;2	12	n	ENSMUSG00000022401.13	Xpnpep3	chr15	protein_coding	X-prolyl aminopeptidase 3, mitochondrial
known_NIR_6559	chr15	81311884	81320915	+	81311884;81315093	81314891;81320915	ES	ENSMUST00000163754.9	known	0.00	0	11.5	0	12;11	n	0.00	0	6.5	0	5;8	n	0.00	0	15.0	0	16;14	n	0.00	0	26.0	0	19;33	n	0.00	0	20.0	0	23;17	n	0.00	0	10.5	0	9;12	n	0.00	0	18.0	0	13;23	n	0.00	0	25.5	0	23;28	n	0.00	0	14.0	0	17;11	n	0.07	2	25.5	2	24;27	y	0.00	0	11.0	0	12;10	n	0.00	0	23.0	0	29;17	n	ENSMUSG00000022401.13	Xpnpep3	chr15	protein_coding	X-prolyl aminopeptidase 3, mitochondrial
known_NIR_6560	chr15	81326665	81335102	+	81326665;81332697	81332520;81335102	ES	ENSMUST00000163754.9	known	0.00	0	14.5	0	16;13	n	0.00	0	8.0	0	5;11	n	0.00	0	22.5	0	16;29	n	0.00	0	22.5	0	22;23	n	0.04	1	26.0	1	23;29	n	0.00	0	14.5	0	16;13	n	0.09	2	21.5	2	17;26	y	0.00	0	14.5	0	11;18	n	0.00	0	19.0	0	6;32	n	0.00	0	33.5	0	33;34	n	0.00	0	8.0	0	9;7	n	0.00	0	22.0	0	24;20	n	ENSMUSG00000022401.13	Xpnpep3	chr15	protein_coding	X-prolyl aminopeptidase 3, mitochondrial
known_NIR_6561	chr15	81350955	81352356	+	81350651	81352356	A5SS	ENSMUST00000023036.7	known	0.06	20	324	20	324	y	0.10	27	255	27	255	y	0.09	29	310	29	310	y	0.07	22	293	22	293	y	0.08	32	355	32	355	y	0.09	21	226	21	226	y	0.06	27	423	27	423	y	0.07	14	200	14	200	y	0.08	23	268	23	268	y	0.04	18	409	18	409	y	0.10	33	291	33	291	y	0.04	17	363	17	363	y	ENSMUSG00000022400.10	Rbx1	chr15	protein_coding	ring-box 1
known_NIR_6562	chr15	81570522	81571193	+	81570522	81571141	A3SS	ENSMUST00000023029.15	known	0.00	0	31	0	31	n	0.00	0	36	0	36	n	0.04	1	22	1	22	n	0.00	0	29	0	29	n	0.00	0	42	0	42	n	0.11	1	8	1	8	n	0.00	0	42	0	42	n	0.09	2	21	2	21	y	0.00	0	40	0	40	n	0.03	1	39	1	39	n	0.00	0	20	0	20	n	0.00	0	35	0	35	n	ENSMUSG00000022394.15	L3mbtl2	chr15	protein_coding	L3MBTL2 polycomb repressive complex 1 subunit
known_NIR_6563	chr15	81608833	81610275	-	81608833	81613418	A5SS	ENSMUST00000230302.2	known	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.20	3	12	3	12	y	0.00	0	8	0	8	n	0.08	1	12	1	12	n	0.00	0	6	0	6	n	0.33	3	6	3	6	n	0.08	1	11	1	11	n	0.20	2	8	2	8	y	0.10	1	9	1	9	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	ENSMUSG00000022391.17	Rangap1	chr15	protein_coding	RAN GTPase activating protein 1
known_NIR_6564	chr15	81608833	81613913	-	81608833	81613418	5pMXE	ENSMUST00000230302.2	known	0.83	45	9	45	9	y	0.78	29	8	29	8	y	0.89	94	12	94	12	y	0.88	60	8	60	8	y	0.87	79	12	79	12	y	0.88	44	6	44	6	y	0.93	75	6	75	6	y	0.74	31	11	31	11	y	0.90	69	8	69	8	y	0.86	57	9	57	9	y	0.82	58	13	58	13	y	0.84	59	11	59	11	y	ENSMUSG00000022391.17	Rangap1	chr15	protein_coding	RAN GTPase activating protein 1
known_NIR_6565	chr15	81608833	81613913	-	81608833;81613465	81613418;81613913	ES	ENSMUST00000170134.9	known	0.83	45	9.0	45	9;9	y	0.83	29	6.0	29	8;4	y	0.91	94	9.0	94	12;6	y	0.90	60	6.5	60	8;5	y	0.89	79	9.5	79	12;7	y	0.91	44	4.5	44	6;3	y	0.93	75	6.0	75	6;6	y	0.79	31	8.0	31	11;5	y	0.91	69	6.5	69	8;5	y	0.90	57	6.5	57	9;4	y	0.83	58	12.0	58	13;11	y	0.87	59	8.5	59	11;6	y	ENSMUSG00000022391.17	Rangap1	chr15	protein_coding	RAN GTPase activating protein 1
known_NIR_6566	chr15	81653067	81653200	+	81653067	81653185	A3SS	ENSMUST00000229044.2	known	0.00	0	29	0	29	n	0.00	0	29	0	29	n	0.07	3	37	3	37	y	0.00	0	31	0	31	n	0.00	0	54	0	54	n	0.04	1	23	1	23	n	0.00	0	47	0	47	n	0.00	0	24	0	24	n	0.00	0	23	0	23	n	0.00	0	36	0	36	n	0.00	0	28	0	28	n	0.00	0	41	0	41	n	ENSMUSG00000022390.12	Zc3h7b	chr15	protein_coding	zinc finger CCCH type containing 7B
known_NIR_6567	chr15	81687087	81689221	+	81687087	81699145	A3SS	ENSMUST00000109553.10	known	0.00	0	21	0	21	n	0.00	0	37	0	37	n	-	-	-	-	-	-	0.00	0	79	0	79	n	0.00	0	31	0	31	n	-	-	-	-	-	-	0.00	0	37	0	37	n	0.00	0	6	0	6	n	0.02	1	48	1	48	n	0.03	3	83	3	83	y	0.00	0	46	0	46	n	0.00	0	72	0	72	n	ENSMUSG00000022389.16	Tef	chr15	protein_coding	thyrotroph embryonic factor
known_NIR_6568	chr15	81687087	81689733	+	81687087	81699145	A3SS	ENSMUST00000109553.10	known	0.00	0	21	0	21	n	0.05	2	37	2	37	y	-	-	-	-	-	-	0.00	0	79	0	79	n	0.00	0	31	0	31	n	-	-	-	-	-	-	0.00	0	37	0	37	n	0.00	0	6	0	6	n	0.00	0	48	0	48	n	0.00	0	83	0	83	n	0.00	0	46	0	46	n	0.00	0	72	0	72	n	ENSMUSG00000022389.16	Tef	chr15	protein_coding	thyrotroph embryonic factor
known_NIR_6569	chr15	81695921	81699145	+	81687087	81699145	A5SS	ENSMUST00000109553.10	known	0.77	72	21	72	21	y	0.54	43	37	43	37	y	1.00	41	0	41	0	n	0.58	107	79	107	79	y	0.72	79	31	79	31	y	1.00	15	0	15	0	n	0.69	83	37	83	37	y	0.85	34	6	34	6	y	0.49	47	48	47	48	y	0.56	106	83	106	83	y	0.65	84	46	84	46	y	0.56	91	72	91	72	y	ENSMUSG00000022389.16	Tef	chr15	protein_coding	thyrotroph embryonic factor
known_NIR_6570	chr15	81696492	81699145	+	81687087	81699145	A5SS	ENSMUST00000109553.10	known	0.22	6	21	6	21	y	0.12	5	37	5	37	y	1.00	2	0	2	0	n	0.16	15	79	15	79	y	0.35	17	31	17	31	y	1.00	5	0	5	0	n	0.30	16	37	16	37	y	0.65	11	6	11	6	y	0.09	5	48	5	48	y	0.21	22	83	22	83	y	0.08	4	46	4	46	y	0.14	12	72	12	72	y	ENSMUSG00000022389.16	Tef	chr15	protein_coding	thyrotroph embryonic factor
known_NIR_6571	chr15	81696492	81699145	+	81695921	81699145	A5SS	ENSMUST00000023024.8	known	0.08	6	72	6	72	y	0.10	5	43	5	43	y	0.05	2	41	2	41	y	0.12	15	107	15	107	y	0.18	17	79	17	79	y	0.25	5	15	5	15	y	0.16	16	83	16	83	y	0.24	11	34	11	34	y	0.10	5	47	5	47	y	0.17	22	106	22	106	y	0.05	4	84	4	84	y	0.12	12	91	12	91	y	ENSMUSG00000022389.16	Tef	chr15	protein_coding	thyrotroph embryonic factor
known_NIR_6572	chr15	81704856	81705400	+	81699462	81705400	A5SS	ENSMUST00000109553.10	known	0.00	0	83	0	83	n	0.04	3	78	3	78	y	0.02	1	50	1	50	n	0.01	2	144	2	144	y	0.03	4	138	4	138	y	0.13	2	13	2	13	y	0.01	1	120	1	120	n	0.00	0	43	0	43	n	0.01	1	91	1	91	n	0.03	7	208	7	208	y	0.04	5	108	5	108	y	0.02	3	173	3	173	y	ENSMUSG00000022389.16	Tef	chr15	protein_coding	thyrotroph embryonic factor
known_NIR_6573	chr15	81750093	81751369	-	81750093	81754533	A5SS	ENSMUST00000023117.10	known	0.01	3	220	3	220	y	0.01	2	150	2	150	y	0.03	5	189	5	189	y	0.03	5	142	5	142	y	0.04	9	193	9	193	y	0.00	0	132	0	132	n	0.02	4	226	4	226	y	0.04	5	122	5	122	y	0.01	1	133	1	133	n	0.04	8	180	8	180	y	0.01	2	165	2	165	y	0.02	3	183	3	183	y	ENSMUSG00000061360.9	Phf5a	chr15	protein_coding	PHD finger protein 5A
known_NIR_6574	chr15	81755390	81755794	-	81755390	81756014	A5SS	ENSMUST00000023117.10	known	0.01	1	149	1	149	n	0.01	1	133	1	133	n	0.03	5	186	5	186	y	0.00	0	139	0	139	n	0.00	0	192	0	192	n	0.01	1	82	1	82	n	0.00	0	188	0	188	n	0.02	2	88	2	88	y	0.00	0	116	0	116	n	0.01	1	184	1	184	n	0.01	2	154	2	154	y	0.00	0	140	0	140	n	ENSMUSG00000061360.9	Phf5a	chr15	protein_coding	PHD finger protein 5A
known_NIR_6575	chr15	81806706	81809429	-	81806706	81809987	A5SS	ENSMUST00000023113.7	known	0.14	6	38	6	38	y	0.03	1	38	1	38	n	0.14	7	44	7	44	y	0.02	1	41	1	41	n	0.00	0	49	0	49	n	0.08	2	23	2	23	y	0.02	1	48	1	48	n	0.06	1	15	1	15	n	0.12	2	15	2	15	y	0.00	0	46	0	46	n	0.08	3	36	3	36	y	0.07	3	43	3	43	y	ENSMUSG00000022476.9	Polr3h	chr15	protein_coding	polymerase (RNA) III (DNA directed) polypeptide H
known_NIR_6576	chr15	81806706	81809444	-	81806706	81809987	A5SS	ENSMUST00000023113.7	known	0.00	0	38	0	38	n	0.03	1	38	1	38	n	0.02	1	44	1	44	n	0.00	0	41	0	41	n	0.00	0	49	0	49	n	0.00	0	23	0	23	n	0.00	0	48	0	48	n	0.00	0	15	0	15	n	0.06	1	15	1	15	n	0.04	2	46	2	46	y	0.00	0	36	0	36	n	0.00	0	43	0	43	n	ENSMUSG00000022476.9	Polr3h	chr15	protein_coding	polymerase (RNA) III (DNA directed) polypeptide H
known_NIR_6577	chr15	81836269	81836926	-	81836240	81836926	A3SS	ENSMUST00000229385.2	known	0.00	0	19	0	19	n	0.00	0	19	0	19	n	0.00	0	1	0	1	n	0.00	0	17	0	17	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	30	0	30	n	-	-	-	-	-	-	0.00	0	17	0	17	n	0.06	2	34	2	34	y	0.00	0	20	0	20	n	0.00	0	8	0	8	n	ENSMUSG00000022474.16	Pmm1	chr15	protein_coding	phosphomannomutase 1
known_NIR_6578	chr15	81882500	81883706	-	81882433	81883706	A3SS	ENSMUST00000146628.8	known	0.01	1	165	1	165	n	0.01	1	145	1	145	n	0.00	1	232	1	232	n	0.01	1	163	1	163	n	0.00	1	224	1	224	n	0.00	0	100	0	100	n	0.02	4	219	4	219	y	0.03	3	95	3	95	y	0.02	2	128	2	128	y	0.02	4	212	4	212	y	0.01	1	151	1	151	n	0.02	3	191	3	191	y	ENSMUSG00000022472.17	Desi1	chr15	protein_coding	desumoylating isopeptidase 1
known_NIR_6579	chr15	81883815;81886811	81886742;81887959	-	81883815	81887959	cassetteExon	ENSMUST00000146628.8	known	0.94	85.0	5	92;78	5	y	0.92	78.0	7	90;66	7	y	0.92	108.5	10	118;99	10	y	0.94	93.5	6	93;94	6	y	0.96	131.0	6	136;126	6	y	0.99	71.0	1	76;66	1	n	0.93	96.0	7	99;93	7	y	0.94	63.5	4	65;62	4	y	0.85	71.5	13	72;71	13	y	0.84	110.5	21	120;101	21	y	0.93	84.5	6	86;83	6	y	0.92	119.5	10	131;108	10	y	ENSMUSG00000022472.17	Desi1	chr15	protein_coding	desumoylating isopeptidase 1
known_NIR_6580	chr15	81901399	81906646	+	81901399;81903294	81903182;81906646	ES	ENSMUST00000165777.8	known	0.00	0	21.5	0	22;21	n	0.07	1	13.0	1	17;9	n	0.12	2	14.5	2	13;16	y	0.00	0	29.0	0	25;33	n	0.00	0	32.5	0	27;38	n	0.00	0	17.5	0	13;22	n	0.00	0	35.0	0	36;34	n	0.04	1	23.0	1	22;24	n	0.00	0	35.0	0	38;32	n	0.00	0	45.0	0	46;44	n	0.00	0	17.5	0	18;17	n	0.00	0	28.0	0	31;25	n	ENSMUSG00000022471.15	Xrcc6	chr15	protein_coding	X-ray repair complementing defective repair in Chinese hamster cells 6
known_NIR_6581	chr15	82032378	82053939	+	82031691	82053939	A5SS	ENSMUST00000023100.8	known	0.01	1	66	1	66	n	0.00	0	51	0	51	n	0.03	3	101	3	101	y	0.06	7	110	7	110	y	0.05	7	140	7	140	y	0.02	1	65	1	65	n	0.02	2	106	2	106	y	0.02	2	80	2	80	y	0.00	0	60	0	60	n	0.02	2	107	2	107	y	0.00	0	60	0	60	n	0.00	0	75	0	75	n	ENSMUSG00000022463.9	Srebf2	chr15	protein_coding	sterol regulatory element binding factor 2
known_NIR_6582	chr15	82080493	82081855	+	82080493	82081819	A3SS	ENSMUST00000023100.8	known	0.00	0	64	0	64	n	0.00	0	75	0	75	n	0.01	1	111	1	111	n	0.00	0	79	0	79	n	0.00	0	158	0	158	n	0.01	1	83	1	83	n	0.00	0	112	0	112	n	0.01	1	88	1	88	n	0.00	0	67	0	67	n	0.02	2	93	2	93	y	0.00	0	57	0	57	n	0.00	0	92	0	92	n	ENSMUSG00000022463.9	Srebf2	chr15	protein_coding	sterol regulatory element binding factor 2
known_NIR_6583	chr15	82118710	82124080	-	82118710;82123585	82123494;82124080	ES	ENSMUST00000089157.11	known	0.00	0	10.0	0	10;10	n	0.00	0	9.5	0	12;7	n	0.00	0	3.5	0	4;3	n	0.00	0	9.5	0	9;10	n	0.00	0	10.0	0	8;12	n	0.00	0	1.5	0	3;0	n	0.00	0	10.5	0	9;12	n	-	-	-	-	-	-	0.19	2	8.5	2	8;9	y	0.00	0	23.0	0	26;20	n	0.00	0	12.0	0	17;7	n	0.00	0	2.5	0	4;1	n	ENSMUSG00000068101.12	Cenpm	chr15	protein_coding	centromere protein M
known_NIR_6584	chr15	82219148	82220044	-	82219148;82219792	82219698;82220044	ES	ENSMUST00000023088.8	known	0.02	2	94.5	2	101;88	y	0.01	1	77.0	1	82;72	n	0.02	2	95.0	2	95;95	y	0.01	1	81.5	1	80;83	n	0.02	3	134.5	3	135;134	y	0.02	1	56.0	1	61;51	n	0.01	1	118.5	1	127;110	n	0.01	1	68.5	1	63;74	n	0.01	1	71.5	1	63;80	n	0.00	0	115.0	0	112;118	n	0.03	2	76.0	2	81;71	y	0.00	0	118.0	0	109;127	n	ENSMUSG00000022453.9	Naga	chr15	protein_coding	N-acetyl galactosaminidase, alpha
known_NIR_6585	chr15	82220221	82221588	-	82220221;82221142	82220971;82221588	ES	ENSMUST00000023088.8	known	0.02	2	91.5	2	83;100	y	0.06	4	66.5	4	68;65	y	0.03	3	103.5	3	102;105	y	0.05	5	95.5	5	105;86	y	0.01	2	133.0	2	125;141	y	0.00	0	58.0	0	57;59	n	0.03	3	110.5	3	108;113	y	0.03	2	62.5	2	61;64	y	0.03	2	76.5	2	84;69	y	0.02	2	121.0	2	118;124	y	0.01	1	82.0	1	75;89	n	0.03	4	124.0	4	124;124	y	ENSMUSG00000022453.9	Naga	chr15	protein_coding	N-acetyl galactosaminidase, alpha
known_NIR_6586	chr15	82220221	82221588	-	82221142	82221588	3pMXE	ENSMUST00000230269.2	known	0.02	2	100	2	100	y	0.06	4	65	4	65	y	0.03	3	105	3	105	y	0.05	5	86	5	86	y	0.01	2	141	2	141	y	0.00	0	59	0	59	n	0.03	3	113	3	113	y	0.03	2	64	2	64	y	0.03	2	69	2	69	y	0.02	2	124	2	124	y	0.01	1	89	1	89	n	0.03	4	124	4	124	y	ENSMUSG00000022453.9	Naga	chr15	protein_coding	N-acetyl galactosaminidase, alpha
known_NIR_6587	chr15	82221697	82222439	-	82221723	82222439	A3SS	ENSMUST00000023088.8	known	0.03	2	63	2	63	y	0.15	8	46	8	46	y	0.06	5	74	5	74	y	0.03	2	72	2	72	y	0.06	7	106	7	106	y	0.02	1	50	1	50	n	0.10	10	91	10	91	y	0.08	5	56	5	56	y	0.06	4	61	4	61	y	0.12	11	77	11	77	y	0.06	4	59	4	59	y	0.06	6	94	6	94	y	ENSMUSG00000022453.9	Naga	chr15	protein_coding	N-acetyl galactosaminidase, alpha
known_NIR_6588	chr15	82230421	82232101	+	82230470	82232101	A5SS	ENSMUST00000023086.15	known	0.08	50	582	50	582	y	0.06	42	632	42	632	y	0.08	44	527	44	527	y	0.07	41	562	41	562	y	0.09	66	658	66	658	y	0.07	25	352	25	352	y	0.08	65	798	65	798	y	0.08	30	334	30	334	y	0.11	57	461	57	461	y	0.10	91	795	91	795	y	0.11	85	687	85	687	y	0.06	48	713	48	713	y	ENSMUSG00000022452.17	Smdt1	chr15	protein_coding	single-pass membrane protein with aspartate rich tail 1
known_NIR_6589	chr15	82231546	82232101	+	82230421	82232101	A5SS	ENSMUST00000161892.2	known	0.00	0	50	0	50	n	0.05	2	42	2	42	y	0.06	3	44	3	44	y	0.05	2	41	2	41	y	0.00	0	66	0	66	n	0.00	0	25	0	25	n	0.04	3	65	3	65	y	0.00	0	30	0	30	n	0.00	0	57	0	57	n	0.02	2	91	2	91	y	0.00	0	85	0	85	n	0.02	1	48	1	48	n	ENSMUSG00000022452.17	Smdt1	chr15	protein_coding	single-pass membrane protein with aspartate rich tail 1
known_NIR_6590	chr15	82231546	82232101	+	82230470	82232101	A5SS	ENSMUST00000023086.15	known	0.00	0	582	0	582	n	0.00	2	632	2	632	y	0.01	3	527	3	527	y	0.00	2	562	2	562	y	0.00	0	658	0	658	n	0.00	0	352	0	352	n	0.00	3	798	3	798	y	0.00	0	334	0	334	n	0.00	0	461	0	461	n	0.00	2	795	2	795	y	0.00	0	687	0	687	n	0.00	1	713	1	713	n	ENSMUSG00000022452.17	Smdt1	chr15	protein_coding	single-pass membrane protein with aspartate rich tail 1
known_NIR_6591	chr15	82234572	82237458	-	82234572	82235180	A5SS&ES	ENSMUST00000023085.7	known	0.00	0	1735	0	1735	n	0.00	0	1771	0	1771	n	0.00	0	1057	0	1057	n	0.00	0	1479	0	1479	n	0.00	0	1889	0	1889	n	0.00	0	619	0	619	n	0.00	0	2235	0	2235	n	0.00	0	706	0	706	n	0.00	0	1579	0	1579	n	0.00	0	2254	0	2254	n	0.00	0	1890	0	1890	n	0.00	2	2039	2	2039	y	ENSMUSG00000022450.7	Ndufa6	chr15	protein_coding	NADH:ubiquinone oxidoreductase subunit A6
known_NIR_6592	chr15	82234572	82238282	-	82234572	82235180	5pMXE	ENSMUST00000230589.2	known	0.02	30	1735	30	1735	y	0.02	37	1771	37	1771	y	0.04	46	1057	46	1057	y	0.01	16	1479	16	1479	y	0.01	19	1889	19	1889	y	0.02	10	619	10	619	y	0.01	31	2235	31	2235	y	0.02	12	706	12	706	y	0.01	17	1579	17	1579	y	0.01	28	2254	28	2254	y	0.02	33	1890	33	1890	y	0.01	31	2039	31	2039	y	ENSMUSG00000022450.7	Ndufa6	chr15	protein_coding	NADH:ubiquinone oxidoreductase subunit A6
known_NIR_6593	chr15	82234572	82238282	-	82234572	82237458	5pMXE	ENSMUST00000230676.2	known	1.00	30	0	30	0	n	1.00	37	0	37	0	n	1.00	46	0	46	0	n	1.00	16	0	16	0	n	1.00	19	0	19	0	n	1.00	10	0	10	0	n	1.00	31	0	31	0	n	1.00	12	0	12	0	n	1.00	17	0	17	0	n	1.00	28	0	28	0	n	1.00	33	0	33	0	n	0.94	31	2	31	2	y	ENSMUSG00000022450.7	Ndufa6	chr15	protein_coding	NADH:ubiquinone oxidoreductase subunit A6
known_NIR_6594	chr15	82234572	82238282	-	82234572;82235295	82235180;82238282	ES	ENSMUST00000023085.7	known	0.02	30	1572.0	30	1735;1409	y	0.02	37	1560.0	37	1771;1349	y	0.05	46	961.5	46	1057;866	y	0.01	16	1404.5	16	1479;1330	y	0.01	19	1740.5	19	1889;1592	y	0.02	10	600.0	10	619;581	y	0.02	31	1986.5	31	2235;1738	y	0.02	12	659.5	12	706;613	y	0.01	17	1411.5	17	1579;1244	y	0.01	28	2007.0	28	2254;1760	y	0.02	33	1697.5	33	1890;1505	y	0.02	31	1791.5	31	2039;1544	y	ENSMUSG00000022450.7	Ndufa6	chr15	protein_coding	NADH:ubiquinone oxidoreductase subunit A6
known_NIR_6595	chr15	82235295	82238282	-	82235295	82236534	5pMXE	ENSMUST00000229427.2	known	1.00	1409	7	1409	7	y	1.00	1349	4	1349	4	y	1.00	866	2	866	2	y	0.99	1330	9	1330	9	y	0.99	1592	11	1592	11	y	1.00	581	0	581	0	n	1.00	1738	7	1738	7	y	1.00	613	1	613	1	n	0.99	1244	10	1244	10	y	1.00	1760	8	1760	8	y	1.00	1505	5	1505	5	y	1.00	1544	6	1544	6	y	ENSMUSG00000022450.7	Ndufa6	chr15	protein_coding	NADH:ubiquinone oxidoreductase subunit A6
known_NIR_6596	chr15	82235295;82236636	82236534;82238282	-	82235295	82238282	cassetteExon	ENSMUST00000023085.7	known	0.00	6.0	1409	7;5	1409	y	0.00	3.5	1349	4;3	1349	y	0.00	1.0	866	2;0	866	n	0.01	8.5	1330	9;8	1330	y	0.01	9.0	1592	11;7	1592	y	0.00	0.0	581	0;0	581	n	0.00	7.0	1738	7;7	1738	y	0.00	0.5	613	1;0	613	n	0.01	8.0	1244	10;6	1244	y	0.00	6.0	1760	8;4	1760	y	0.00	7.5	1505	5;10	1505	y	0.00	4.5	1544	6;3	1544	y	ENSMUSG00000022450.7	Ndufa6	chr15	protein_coding	NADH:ubiquinone oxidoreductase subunit A6
known_NIR_6597	chr15	82236636	82238282	-	82234572	82238282	A3SS	ENSMUST00000230494.2	known	0.14	5	30	5	30	y	0.07	3	37	3	37	y	0.00	0	46	0	46	n	0.33	8	16	8	16	y	0.27	7	19	7	19	y	0.00	0	10	0	10	n	0.18	7	31	7	31	y	0.00	0	12	0	12	n	0.26	6	17	6	17	y	0.12	4	28	4	28	y	0.23	10	33	10	33	y	0.09	3	31	3	31	y	ENSMUSG00000022450.7	Ndufa6	chr15	protein_coding	NADH:ubiquinone oxidoreductase subunit A6
known_NIR_6598	chr15	82256778	82257312	-	82256778	82258499	A5SS	ENSMUST00000228986.2	known	1.00	60	0	60	0	n	0.99	103	1	103	1	n	0.98	65	1	65	1	n	1.00	67	0	67	0	n	0.97	100	3	100	3	y	0.93	37	3	37	3	y	0.95	55	3	55	3	y	1.00	46	0	46	0	n	1.00	45	0	45	0	n	0.93	79	6	79	6	y	0.96	43	2	43	2	y	1.00	53	0	53	0	n	ENSMUSG00000061740.9	Cyp2d22	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 22
known_NIR_6599	chr15	82256778	82257312	-	82256778;82257127	82256986;82257312	ES	ENSMUST00000023083.9	known	0.09	60	630.0	60	545;715	y	0.20	103	406.5	103	355;458	y	0.20	65	266.0	65	234;298	y	0.10	67	633.0	67	560;706	y	0.12	100	757.5	100	683;832	y	0.14	37	221.5	37	194;249	y	0.06	55	808.0	55	737;879	y	0.14	46	294.0	46	263;325	y	0.07	45	576.5	45	542;611	y	0.11	79	640.0	79	601;679	y	0.06	43	697.5	43	639;756	y	0.07	53	659.0	53	594;724	y	ENSMUSG00000061740.9	Cyp2d22	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 22
known_NIR_6600	chr15	82256778	82258499	-	82256778	82256986	A5SS&ES	ENSMUST00000230663.2	known	0.00	0	545	0	545	n	0.00	1	355	1	355	n	0.00	1	234	1	234	n	0.00	0	560	0	560	n	0.00	3	683	3	683	y	0.02	3	194	3	194	y	0.00	3	737	3	737	y	0.00	0	263	0	263	n	0.00	0	542	0	542	n	0.01	6	601	6	601	y	0.00	2	639	2	639	y	0.00	0	594	0	594	n	ENSMUSG00000061740.9	Cyp2d22	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 22
known_NIR_6601	chr15	82258257	82258499	-	82256778	82258499	A3SS	ENSMUST00000228986.2	known	1.00	269	0	269	0	n	1.00	213	1	213	1	n	0.99	114	1	114	1	n	1.00	309	0	309	0	n	0.99	421	3	421	3	y	0.97	101	3	101	3	y	0.99	392	3	392	3	y	1.00	151	0	151	0	n	1.00	272	0	272	0	n	0.98	360	6	360	6	y	0.99	273	2	273	2	y	1.00	341	0	341	0	n	ENSMUSG00000061740.9	Cyp2d22	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 22
known_NIR_6602	chr15	82287297	82287920	-	82287539	82287920	3pMXE	ENSMUST00000230843.2	known	0.03	78	2396	78	2396	y	0.05	117	2370	117	2370	y	0.08	103	1114	103	1114	y	0.03	68	2121	68	2121	y	0.05	131	2657	131	2657	y	0.07	64	830	64	830	y	0.04	104	2801	104	2801	y	0.06	60	911	60	911	y	0.03	60	2115	60	2115	y	0.04	133	3310	133	3310	y	0.03	108	3045	108	3045	y	0.04	91	2450	91	2450	y	ENSMUSG00000094806.3	Cyp2d10	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 10
known_NIR_6603	chr15	82287297;82287539	82287398;82287920	-	82287297	82287920	cassetteExon	ENSMUST00000230198.2	known	0.97	2452.0	78	2508;2396	78	y	0.95	2411.5	117	2453;2370	117	y	0.91	1058.5	103	1003;1114	103	y	0.97	2209.0	68	2297;2121	68	y	0.95	2767.5	131	2878;2657	131	y	0.93	796.5	64	763;830	64	y	0.96	2734.0	104	2667;2801	104	y	0.94	906.5	60	902;911	60	y	0.97	2066.0	60	2017;2115	60	y	0.96	3310.0	133	3310;3310	133	y	0.97	3127.5	108	3210;3045	108	y	0.96	2408.0	91	2366;2450	91	y	ENSMUSG00000094806.3	Cyp2d10	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 10
known_NIR_6604	chr15	82287297;82287539	82287398;82289436	-	82287297;82288805	82287920;82289436	MXE	ENSMUST00000230198.2	known	0.63	1254.0	747.5	2508;0	78;1417	n	0.64	1226.5	682.5	2453;0	117;1248	n	0.57	501.5	383.5	1003;0	103;664	n	0.59	1148.5	787.0	2297;0	68;1506	n	0.62	1439.0	890.0	2878;0	131;1649	n	0.57	382.5	292.0	763;2	64;520	y	0.60	1333.5	906.0	2667;0	104;1708	n	0.59	451.0	310.0	902;0	60;560	n	0.61	1008.5	650.5	2017;0	60;1241	n	0.62	1655.0	999.5	3310;0	133;1866	n	0.65	1605.0	870.5	3210;0	108;1633	n	0.59	1183.0	835.5	2366;0	91;1580	n	ENSMUSG00000094806.3	Cyp2d10	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 10
known_NIR_6605	chr15	82287297;82288107	82287920;82290108	-	82287297;82289839	82287398;82290108	MXE	ENSMUST00000229911.2	known	0.02	39.0	1962.0	78;0	2508;1416	n	0.03	62.0	1917.5	117;7	2453;1382	y	0.06	54.0	888.5	103;5	1003;774	y	0.02	34.0	2042.5	68;0	2297;1788	n	0.03	67.0	2365.5	131;3	2878;1853	y	0.04	32.0	690.0	64;0	763;617	n	0.03	55.5	2160.0	104;7	2667;1653	y	0.04	33.0	806.0	60;6	902;710	y	0.02	30.5	1751.0	60;1	2017;1485	n	0.02	69.5	2772.5	133;6	3310;2235	y	0.02	54.0	2503.5	108;0	3210;1797	n	0.02	45.5	2046.5	91;0	2366;1727	n	ENSMUSG00000094806.3	Cyp2d10	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 10
known_NIR_6606	chr15	82288107	82288304	-	82288107	82290108	A5SS	ENSMUST00000230248.2	known	1.00	2121	0	2121	0	n	1.00	2094	7	2094	7	y	0.99	969	5	969	5	y	1.00	2162	0	2162	0	n	1.00	2457	3	2457	3	y	1.00	737	0	737	0	n	1.00	2424	7	2424	7	y	0.99	877	6	877	6	y	1.00	1944	1	1944	1	n	1.00	2901	6	2901	6	y	1.00	2754	0	2754	0	n	1.00	2263	0	2263	0	n	ENSMUSG00000094806.3	Cyp2d10	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 10
known_NIR_6607	chr15	82288445	82288629	-	82288445	82289687	A5SS	ENSMUST00000229628.2	known	1.00	1874	0	1874	0	n	1.00	2028	0	2028	0	n	1.00	847	0	847	0	n	1.00	2150	0	2150	0	n	1.00	2204	0	2204	0	n	1.00	664	0	664	0	n	1.00	2411	0	2411	0	n	1.00	863	0	863	0	n	1.00	1756	0	1756	0	n	1.00	2614	2	2614	2	y	1.00	2429	0	2429	0	n	1.00	2128	0	2128	0	n	ENSMUSG00000094806.3	Cyp2d10	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 10
known_NIR_6608	chr15	82288445	82289436	-	82287539	82289436	A3SS	ENSMUST00000229911.2	known	1.00	456	0	456	0	n	1.00	440	0	440	0	n	1.00	215	0	215	0	n	1.00	413	0	413	0	n	1.00	494	0	494	0	n	0.99	149	2	149	2	y	1.00	459	0	459	0	n	1.00	175	0	175	0	n	1.00	396	0	396	0	n	1.00	527	0	527	0	n	1.00	467	0	467	0	n	1.00	466	0	466	0	n	ENSMUSG00000094806.3	Cyp2d10	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 10
known_NIR_6609	chr15	82288445	82289436	-	82288445;82288805	82288629;82289436	ES	ENSMUST00000230198.2	known	0.22	456	1645.5	456	1874;1417	y	0.21	440	1638.0	440	2028;1248	y	0.22	215	755.5	215	847;664	y	0.18	413	1828.0	413	2150;1506	y	0.20	494	1926.5	494	2204;1649	y	0.20	149	592.0	149	664;520	y	0.18	459	2059.5	459	2411;1708	y	0.20	175	711.5	175	863;560	y	0.21	396	1498.5	396	1756;1241	y	0.19	527	2240.0	527	2614;1866	y	0.19	467	2031.0	467	2429;1633	y	0.20	466	1854.0	466	2128;1580	y	ENSMUSG00000094806.3	Cyp2d10	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 10
known_NIR_6610	chr15	82288445	82289687	-	82289596	82289687	A3SS&ES	ENSMUST00000229911.2	known	0.00	0	2178	0	2178	n	0.00	0	1954	0	1954	n	0.00	0	1049	0	1049	n	0.00	0	2415	0	2415	n	0.00	0	2878	0	2878	n	0.00	0	891	0	891	n	0.00	0	2531	0	2531	n	0.00	0	955	0	955	n	0.00	0	2159	0	2159	n	0.00	2	3083	2	3083	y	0.00	0	2603	0	2603	n	0.00	0	2468	0	2468	n	ENSMUSG00000094806.3	Cyp2d10	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 10
known_NIR_6611	chr15	82288445;82289596	82289436;82289687	-	82288445	82289687	cassetteExon	ENSMUST00000229628.2	known	1.00	1317.0	0	456;2178	0	n	1.00	1197.0	0	440;1954	0	n	1.00	632.0	0	215;1049	0	n	1.00	1414.0	0	413;2415	0	n	1.00	1686.0	0	494;2878	0	n	1.00	520.0	0	149;891	0	n	1.00	1495.0	0	459;2531	0	n	1.00	565.0	0	175;955	0	n	1.00	1277.5	0	396;2159	0	n	1.00	1805.0	2	527;3083	2	y	1.00	1535.0	0	467;2603	0	n	1.00	1467.0	0	466;2468	0	n	ENSMUSG00000094806.3	Cyp2d10	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 10
known_NIR_6612	chr15	82288805	82289436	-	82287539	82289436	A3SS	ENSMUST00000229911.2	known	1.00	1417	0	1417	0	n	1.00	1248	0	1248	0	n	1.00	664	0	664	0	n	1.00	1506	0	1506	0	n	1.00	1649	0	1649	0	n	1.00	520	2	520	2	y	1.00	1708	0	1708	0	n	1.00	560	0	560	0	n	1.00	1241	0	1241	0	n	1.00	1866	0	1866	0	n	1.00	1633	0	1633	0	n	1.00	1580	0	1580	0	n	ENSMUSG00000094806.3	Cyp2d10	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 10
known_NIR_6613	chr15	82289839	82290108	-	82288107	82290108	A3SS	ENSMUST00000230248.2	known	1.00	1416	0	1416	0	n	0.99	1382	7	1382	7	y	0.99	774	5	774	5	y	1.00	1788	0	1788	0	n	1.00	1853	3	1853	3	y	1.00	617	0	617	0	n	1.00	1653	7	1653	7	y	0.99	710	6	710	6	y	1.00	1485	1	1485	1	n	1.00	2235	6	2235	6	y	1.00	1797	0	1797	0	n	1.00	1727	0	1727	0	n	ENSMUSG00000094806.3	Cyp2d10	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 10
known_NIR_6614	chr15	82336841	82337799	+	82317913	82337799	A5SS	ENSMUST00000229793.2	known	1.00	3032	0	3032	0	n	1.00	1949	0	1949	0	n	1.00	2114	4	2114	4	y	1.00	3679	6	3679	6	y	1.00	4552	5	4552	5	y	1.00	1382	2	1382	2	y	1.00	4264	3	4264	3	y	1.00	1392	3	1392	3	y	1.00	2847	0	2847	0	n	1.00	4110	7	4110	7	y	1.00	2892	2	2892	2	y	1.00	2163	2	2163	2	y	ENSMUSG00000068086.7	Cyp2d9	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 9
known_NIR_6615	chr15	82336841	82337828	+	82336841	82337799	A3SS	ENSMUST00000089129.7	known	0.02	59	3032	59	3032	y	0.02	38	1949	38	1949	y	0.02	38	2114	38	2114	y	0.03	103	3679	103	3679	y	0.02	100	4552	100	4552	y	0.03	39	1382	39	1382	y	0.03	113	4264	113	4264	y	0.01	11	1392	11	1392	y	0.02	49	2847	49	2847	y	0.02	87	4110	87	4110	y	0.02	73	2892	73	2892	y	0.03	64	2163	64	2163	y	ENSMUSG00000068086.7	Cyp2d9	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 9
known_NIR_6616	chr15	82337970	82338482	+	82337970	82338239	A3SS&ES	ENSMUST00000231136.2	known	0.00	12	2929	12	2929	y	0.00	3	2056	3	2056	y	0.01	16	2081	16	2081	y	0.00	2	3610	2	3610	y	0.00	10	4430	10	4430	y	0.01	8	1217	8	1217	y	0.00	14	4443	14	4443	y	0.00	1	1467	1	1467	n	0.00	6	3209	6	3209	y	0.00	13	4194	13	4194	y	0.00	4	3066	4	3066	y	0.00	5	2109	5	2109	y	ENSMUSG00000068086.7	Cyp2d9	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 9
known_NIR_6617	chr15	82337970	82338482	+	82338391	82338482	5pMXE	ENSMUST00000230000.2	known	0.00	12	3995	12	3995	y	0.00	3	2816	3	2816	y	0.01	16	2733	16	2733	y	0.00	2	4795	2	4795	y	0.00	10	6360	10	6360	y	0.00	8	1812	8	1812	y	0.00	14	6239	14	6239	y	0.00	1	1977	1	1977	n	0.00	6	4220	6	4220	y	0.00	13	5685	13	5685	y	0.00	4	4146	4	4146	y	0.00	5	2894	5	2894	y	ENSMUSG00000068086.7	Cyp2d9	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 9
known_NIR_6618	chr15	82337970;82338391	82338239;82338482	+	82337970	82338482	cassetteExon	ENSMUST00000229793.2	known	1.00	3462.0	12	2929;3995	12	y	1.00	2436.0	3	2056;2816	3	y	0.99	2407.0	16	2081;2733	16	y	1.00	4202.5	2	3610;4795	2	y	1.00	5395.0	10	4430;6360	10	y	0.99	1514.5	8	1217;1812	8	y	1.00	5341.0	14	4443;6239	14	y	1.00	1722.0	1	1467;1977	1	n	1.00	3714.5	6	3209;4220	6	y	1.00	4939.5	13	4194;5685	13	y	1.00	3606.0	4	3066;4146	4	y	1.00	2501.5	5	2109;2894	5	y	ENSMUSG00000068086.7	Cyp2d9	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 9
known_NIR_6619	chr15	82338391	82338572	+	82338391	82338482	A3SS	ENSMUST00000089129.7	known	0.00	9	3995	9	3995	y	0.00	11	2816	11	2816	y	0.00	7	2733	7	2733	y	0.00	10	4795	10	4795	y	0.00	15	6360	15	6360	y	0.00	1	1812	1	1812	n	0.00	16	6239	16	6239	y	0.00	2	1977	2	1977	y	0.00	13	4220	13	4220	y	0.00	17	5685	17	5685	y	0.00	8	4146	8	4146	y	0.00	14	2894	14	2894	y	ENSMUSG00000068086.7	Cyp2d9	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 9
known_NIR_6620	chr15	82339451	82339973	+	82339451	82339635	3pMXE	ENSMUST00000229473.2	known	0.03	123	3785	123	3785	y	0.04	130	2768	130	2768	y	0.03	82	2458	82	2458	y	0.04	171	4020	171	4020	y	0.03	189	5542	189	5542	y	0.03	52	1442	52	1442	y	0.03	196	5831	196	5831	y	0.05	93	1622	93	1622	y	0.04	146	3804	146	3804	y	0.05	240	4891	240	4891	y	0.03	133	3837	133	3837	y	0.03	80	2586	80	2586	y	ENSMUSG00000068086.7	Cyp2d9	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 9
known_NIR_6621	chr15	82339451	82339973	+	82339451;82339776	82339635;82339973	ES	ENSMUST00000089129.7	known	0.04	123	3322.5	123	3785;2860	y	0.05	130	2462.0	130	2768;2156	y	0.04	82	2113.0	82	2458;1768	y	0.05	171	3461.0	171	4020;2902	y	0.04	189	4737.0	189	5542;3932	y	0.04	52	1215.5	52	1442;989	y	0.04	196	4926.0	196	5831;4021	y	0.06	93	1383.5	93	1622;1145	y	0.04	146	3328.0	146	3804;2852	y	0.05	240	4245.5	240	4891;3600	y	0.04	133	3469.5	133	3837;3102	y	0.03	80	2235.0	80	2586;1884	y	ENSMUSG00000068086.7	Cyp2d9	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 9
known_NIR_6622	chr15	82339451	82340535	+	82339451	82339635	3pMXE	ENSMUST00000229473.2	known	0.01	57	3785	57	3785	y	0.02	65	2768	65	2768	y	0.01	33	2458	33	2458	y	0.02	63	4020	63	4020	y	0.01	56	5542	56	5542	y	0.01	21	1442	21	1442	y	0.01	70	5831	70	5831	y	0.01	20	1622	20	1622	y	0.02	60	3804	60	3804	y	0.02	81	4891	81	4891	y	0.02	61	3837	61	3837	y	0.02	44	2586	44	2586	y	ENSMUSG00000068086.7	Cyp2d9	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 9
known_NIR_6623	chr15	82339451	82340535	+	82339451;82340160	82339973;82340535	ES	ENSMUST00000230191.2	known	0.02	57	2302.0	57	123;4481	y	0.03	65	1834.5	65	130;3539	y	0.02	33	1370.5	33	82;2659	y	0.03	63	2213.0	63	171;4255	y	0.02	56	3251.0	56	189;6313	y	0.02	21	890.0	21	52;1728	y	0.02	70	3614.0	70	196;7032	y	0.02	20	946.5	20	93;1800	y	0.03	60	2289.5	60	146;4433	y	0.03	81	2980.5	81	240;5721	y	0.02	61	2593.5	61	133;5054	y	0.03	44	1508.5	44	80;2937	y	ENSMUSG00000068086.7	Cyp2d9	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 9
known_NIR_6624	chr15	82340160	82340575	+	82340160	82340535	A3SS	ENSMUST00000089129.7	known	0.05	217	4481	217	4481	y	0.04	165	3539	165	3539	y	0.05	148	2659	148	2659	y	0.04	185	4255	185	4255	y	0.04	276	6313	276	6313	y	0.04	72	1728	72	1728	y	0.04	314	7032	314	7032	y	0.05	102	1800	102	1800	y	0.03	129	4433	129	4433	y	0.04	267	5721	267	5721	y	0.04	186	5054	186	5054	y	0.05	153	2937	153	2937	y	ENSMUSG00000068086.7	Cyp2d9	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 9
known_NIR_6625	chr15	82524701;82525157	82524986;82525986	-	82524701	82525986	cassetteExon	ENSMUST00000238885.2	known	0.97	156.0	5	58;254	5	y	0.98	164.5	4	42;287	4	y	1.00	41.0	0	27;55	0	n	0.97	217.0	6	90;344	6	y	0.97	202.5	6	67;338	6	y	0.93	38.0	3	25;51	3	y	0.97	176.0	5	70;282	5	y	0.99	72.5	1	21;124	1	n	0.98	162.5	4	44;281	4	y	0.98	220.5	4	87;354	4	y	1.00	206.5	1	70;343	1	n	0.98	167.5	4	43;292	4	y	ENSMUSG00000118516.2	Cyp2d13	chr15	polymorphic_pseudogene	cytochrome P450, family 2, subfamily d, polypeptide 13
known_NIR_6626	chr15	82574063	82574283	-	82574063	82574176	A5SS	ENSMUST00000100380.5	known	0.64	53	30	53	30	y	0.52	64	59	64	59	y	0.82	9	2	9	2	y	0.52	71	65	71	65	y	0.71	83	34	83	34	y	0.65	11	6	11	6	y	0.61	95	61	95	61	y	0.67	29	14	29	14	y	0.57	89	66	89	66	y	0.48	79	87	79	87	y	0.66	136	69	136	69	y	0.63	77	46	77	46	y	ENSMUSG00000075517.6	Cyp2d37-ps	chr15	transcribed_unprocessed_pseudogene	cytochrome P450, family 2, subfamily d, polypeptide 37, pseudogene
known_NIR_6627	chr15	82574739;82575561	82575401;82575643	-	82574739;82575346	82575172;82575643	MXE	ENSMUST00000100380.5	known	0.22	33.5	119.0	8;59	72;166	y	0.22	41.0	148.5	8;74	81;216	y	0.18	3.5	16.0	1;6	13;19	n	0.27	64.0	173.0	9;119	100;246	y	0.22	43.5	156.0	13;74	88;224	y	0.23	8.0	26.5	3;13	22;31	y	0.24	54.0	171.0	12;96	103;239	y	0.25	22.0	66.0	5;39	39;93	y	0.20	49.5	197.5	12;87	101;294	y	0.24	72.0	228.0	17;127	127;329	y	0.26	70.5	200.0	7;134	133;267	y	0.21	43.5	167.5	13;74	98;237	y	ENSMUSG00000075517.6	Cyp2d37-ps	chr15	transcribed_unprocessed_pseudogene	cytochrome P450, family 2, subfamily d, polypeptide 37, pseudogene
known_NIR_6628	chr15	82575795;82576244	82576073;82577014	-	82575795	82577014	cassetteExon	ENSMUST00000100380.5	known	0.08	4.5	52	1;8	52	n	0.22	14.5	52	6;23	52	y	0.67	2.0	1	0;4	1	n	0.15	12.5	69	7;18	69	y	0.30	25.5	59	9;42	59	y	0.36	5.0	9	2;8	9	y	0.24	20.0	63	7;33	63	y	0.42	15.5	21	6;25	21	y	0.11	12.5	106	5;20	106	y	0.14	19.0	118	7;31	118	y	0.18	18.5	85	6;31	85	y	0.16	13.5	71	2;25	71	y	ENSMUSG00000075517.6	Cyp2d37-ps	chr15	transcribed_unprocessed_pseudogene	cytochrome P450, family 2, subfamily d, polypeptide 37, pseudogene
known_NIR_6629	chr15	82590500	82591313	-	82578054	82591313	A3SS	ENSMUST00000229532.2	known	0.57	25	19	25	19	y	0.47	23	26	23	26	y	0.75	3	1	3	1	n	0.48	49	53	49	53	y	0.39	31	49	31	49	y	0.67	6	3	6	3	n	0.38	32	52	32	52	y	0.66	19	10	19	10	y	0.28	24	63	24	63	y	0.46	55	64	55	64	y	0.47	27	30	27	30	y	0.42	36	49	36	49	y	ENSMUSG00000116354.2	Cyp2d38-ps	chr15	transcribed_unprocessed_pseudogene	cytochrome P450, family 2, subfamily d, member 38, pseudogene
known_NIR_6630	chr15	82677061	82677406	-	82677061	82677327	A5SS	ENSMUST00000006094.6	known	0.01	38	2689	38	2689	y	0.02	49	2558	49	2558	y	0.02	32	1564	32	1564	y	0.01	39	3131	39	3131	y	0.01	50	3352	50	3352	y	0.02	27	1152	27	1152	y	0.01	51	3900	51	3900	y	0.02	37	1906	37	1906	y	0.02	36	2128	36	2128	y	0.02	76	3590	76	3590	y	0.02	60	2673	60	2673	y	0.02	43	2622	43	2622	y	ENSMUSG00000022445.8	Cyp2d26	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 26
known_NIR_6631	chr15	82677469	82678186	-	82677498	82678186	A3SS	ENSMUST00000006094.6	known	0.02	50	2306	50	2306	y	0.03	60	2027	60	2027	y	0.02	26	1422	26	1422	y	0.02	52	2688	52	2688	y	0.02	66	3150	66	3150	y	0.02	20	1071	20	1071	y	0.02	76	3211	76	3211	y	0.03	44	1614	44	1614	y	0.03	48	1734	48	1734	y	0.02	76	3122	76	3122	y	0.02	44	2283	44	2283	y	0.02	45	2287	45	2287	y	ENSMUSG00000022445.8	Cyp2d26	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 26
known_NIR_6632	chr15	82693988;82698804	82698682;82699812	-	82693988	82699812	cassetteExon	ENSMUST00000048966.7	known	0.06	2.5	38	3;2	38	y	0.04	1.0	27	2;0	27	n	0.04	1.0	25	1;1	25	n	0.10	3.5	32	6;1	32	n	0.06	2.5	40	3;2	40	y	0.00	0.0	16	0;0	16	n	0.11	5.0	40	4;6	40	y	0.12	2.0	15	3;1	15	n	0.12	3.0	23	1;5	23	n	0.03	1.0	36	2;0	36	n	0.03	1.0	31	2;0	31	n	0.07	2.0	26	4;0	26	n	ENSMUSG00000041852.16	Tcf20	chr15	protein_coding	transcription factor 20
known_NIR_6633	chr15	82984548	82986073	+	82984548	82985845	A3SS	ENSMUST00000167645.8	known	0.00	0	45	0	45	n	0.00	0	44	0	44	n	0.00	0	49	0	49	n	0.00	0	55	0	55	n	0.00	0	70	0	70	n	0.00	0	23	0	23	n	0.00	0	68	0	68	n	0.00	0	18	0	18	n	0.00	0	34	0	34	n	0.03	2	76	2	76	y	0.00	0	56	0	56	n	0.00	0	54	0	54	n	ENSMUSG00000058586.13	Serhl	chr15	protein_coding	serine hydrolase-like
known_NIR_6634	chr15	82984548	82986073	+	82984548;82985994	82985845;82986073	ES	ENSMUST00000078218.11	known	0.00	0	60.5	0	45;76	n	0.00	0	51.5	0	44;59	n	0.00	0	49.0	0	49;49	n	0.00	0	71.0	0	55;87	n	0.00	0	89.5	0	70;109	n	0.00	0	30.5	0	23;38	n	0.00	0	81.5	0	68;95	n	0.00	0	28.5	0	18;39	n	0.00	0	46.5	0	34;59	n	0.02	2	105.0	2	76;134	y	0.00	0	76.0	0	56;96	n	0.00	0	83.0	0	54;112	n	ENSMUSG00000058586.13	Serhl	chr15	protein_coding	serine hydrolase-like
known_NIR_6635	chr15	82984548	82986073	+	82985994	82986073	A5SS&ES	ENSMUST00000168029.8	known	0.00	0	76	0	76	n	0.00	0	59	0	59	n	0.00	0	49	0	49	n	0.00	0	87	0	87	n	0.00	0	109	0	109	n	0.00	0	38	0	38	n	0.00	0	95	0	95	n	0.00	0	39	0	39	n	0.00	0	59	0	59	n	0.01	2	134	2	134	y	0.00	0	96	0	96	n	0.00	0	112	0	112	n	ENSMUSG00000058586.13	Serhl	chr15	protein_coding	serine hydrolase-like
known_NIR_6636	chr15	82986541	82987135	+	82986541	82986826	A3SS	ENSMUST00000172101.8	known	0.00	0	51	0	51	n	0.00	0	42	0	42	n	0.05	2	37	2	37	y	0.02	1	65	1	65	n	0.00	0	62	0	62	n	0.00	0	36	0	36	n	0.00	0	73	0	73	n	0.00	0	47	0	47	n	0.00	0	51	0	51	n	0.00	0	92	0	92	n	0.00	0	63	0	63	n	0.00	0	72	0	72	n	ENSMUSG00000058586.13	Serhl	chr15	protein_coding	serine hydrolase-like
known_NIR_6637	chr15	82986541	82987135	+	82986541;82986845	82986826;82987135	ES	ENSMUST00000168029.8	known	0.00	0	52.0	0	51;53	n	0.00	0	51.0	0	42;60	n	0.05	2	41.5	2	37;46	y	0.02	1	64.5	1	65;64	n	0.00	0	64.5	0	62;67	n	0.00	0	40.0	0	36;44	n	0.00	0	78.5	0	73;84	n	0.00	0	45.0	0	47;43	n	0.00	0	55.5	0	51;60	n	0.00	0	100.0	0	92;108	n	0.00	0	70.0	0	63;77	n	0.00	0	75.0	0	72;78	n	ENSMUSG00000058586.13	Serhl	chr15	protein_coding	serine hydrolase-like
known_NIR_6638	chr15	82998640	83000458	+	82998640	82999768	3pMXE	ENSMUST00000167635.8	known	0.02	2	105	2	105	y	0.00	0	88	0	88	n	0.00	0	73	0	73	n	0.00	0	108	0	108	n	0.00	0	109	0	109	n	0.00	0	67	0	67	n	0.00	0	137	0	137	n	0.00	0	76	0	76	n	0.00	0	95	0	95	n	0.00	0	135	0	135	n	0.00	0	110	0	110	n	0.00	0	136	0	136	n	ENSMUSG00000058586.13	Serhl	chr15	protein_coding	serine hydrolase-like
known_NIR_6639	chr15	82998640	83000458	+	82998640;82999864	82999768;83000458	ES	ENSMUST00000078218.11	known	0.02	2	90.5	2	105;76	y	0.00	0	95.0	0	88;102	n	0.00	0	65.5	0	73;58	n	0.00	0	107.0	0	108;106	n	0.00	0	105.5	0	109;102	n	0.00	0	54.5	0	67;42	n	0.00	0	132.5	0	137;128	n	0.00	0	61.5	0	76;47	n	0.00	0	87.5	0	95;80	n	0.00	0	131.5	0	135;128	n	0.00	0	114.0	0	110;118	n	0.00	0	122.5	0	136;109	n	ENSMUSG00000058586.13	Serhl	chr15	protein_coding	serine hydrolase-like
known_NIR_6640	chr15	82998640	83000458	+	82999864	83000458	5pMXE	ENSMUST00000169461.2	known	0.03	2	76	2	76	y	0.00	0	102	0	102	n	0.00	0	58	0	58	n	0.00	0	106	0	106	n	0.00	0	102	0	102	n	0.00	0	42	0	42	n	0.00	0	128	0	128	n	0.00	0	47	0	47	n	0.00	0	80	0	80	n	0.00	0	128	0	128	n	0.00	0	118	0	118	n	0.00	0	109	0	109	n	ENSMUSG00000058586.13	Serhl	chr15	protein_coding	serine hydrolase-like
known_NIR_6641	chr15	83003503	83003715	-	83003503	83004093	A5SS	ENSMUST00000018184.10	known	0.00	0	50	0	50	n	0.00	0	55	0	55	n	0.03	2	70	2	70	y	0.00	0	72	0	72	n	0.03	2	63	2	63	y	0.06	2	30	2	30	y	0.02	1	64	1	64	n	0.03	1	36	1	36	n	0.00	0	49	0	49	n	0.00	0	84	0	84	n	0.00	0	73	0	73	n	0.05	4	79	4	79	y	ENSMUSG00000018040.10	Rrp7a	chr15	protein_coding	ribosomal RNA processing 7 homolog A
known_NIR_6642	chr15	83019590	83022333	-	83019590;83021755	83021669;83022333	ES	ENSMUST00000058793.14	known	0.13	5	34.0	5	36;32	y	0.11	3	24.0	3	20;28	y	0.11	5	40.5	5	38;43	y	0.05	2	40.0	2	36;44	y	0.11	8	64.5	8	57;72	y	0.00	0	28.5	0	18;39	n	0.04	2	49.5	2	46;53	y	0.00	0	36.5	0	23;50	n	0.03	1	33.5	1	20;47	n	0.02	1	61.5	1	53;70	n	0.03	1	28.0	1	23;33	n	0.06	3	51.5	3	35;68	y	ENSMUSG00000041815.15	Poldip3	chr15	protein_coding	polymerase (DNA-directed), delta interacting protein 3
known_NIR_6643	chr15	83019590	83022333	-	83021755	83022333	3pMXE	ENSMUST00000149802.2	known	0.14	5	32	5	32	y	0.10	3	28	3	28	y	0.10	5	43	5	43	y	0.04	2	44	2	44	y	0.10	8	72	8	72	y	0.00	0	39	0	39	n	0.04	2	53	2	53	y	0.00	0	50	0	50	n	0.02	1	47	1	47	n	0.01	1	70	1	70	n	0.03	1	33	1	33	n	0.04	3	68	3	68	y	ENSMUSG00000041815.15	Poldip3	chr15	protein_coding	polymerase (DNA-directed), delta interacting protein 3
known_NIR_6644	chr15	83050407	83056313	-	83050407	83054338	5pMXE	ENSMUST00000162834.3	known	0.98	524	10	524	10	y	1.00	376	1	376	1	n	1.00	293	1	293	1	n	0.98	512	10	512	10	y	0.99	614	8	614	8	y	1.00	173	0	173	0	n	0.99	493	6	493	6	y	0.99	192	1	192	1	n	0.97	572	15	572	15	y	0.99	793	10	793	10	y	0.97	622	20	622	20	y	0.98	700	11	700	11	y	ENSMUSG00000018042.19	Cyb5r3	chr15	protein_coding	cytochrome b5 reductase 3
known_NIR_6645	chr15	83187425	83189442	-	83187425	83191082	A5SS	ENSMUST00000067215.9	known	0.00	0	43	0	43	n	0.00	0	44	0	44	n	0.00	0	80	0	80	n	0.00	0	31	0	31	n	0.00	0	27	0	27	n	0.00	0	46	0	46	n	0.00	0	26	0	26	n	0.00	0	41	0	41	n	0.00	0	15	0	15	n	0.00	0	15	0	15	n	0.00	0	14	0	14	n	0.05	2	35	2	35	y	ENSMUSG00000054277.9	Arfgap3	chr15	protein_coding	ADP-ribosylation factor GTPase activating protein 3
known_NIR_6646	chr15	83194582	83197670	-	83194585	83197670	A3SS	ENSMUST00000067215.9	known	0.19	7	29	7	29	y	0.22	10	35	10	35	y	0.14	18	109	18	109	y	0.18	5	23	5	23	y	0.21	11	42	11	42	y	0.15	10	55	10	55	y	0.24	11	34	11	34	y	0.15	7	40	7	40	y	0.26	5	14	5	14	y	0.11	3	24	3	24	y	0.23	5	17	5	17	y	0.26	7	20	7	20	y	ENSMUSG00000054277.9	Arfgap3	chr15	protein_coding	ADP-ribosylation factor GTPase activating protein 3
known_NIR_6647	chr15	83243151;83248129	83248021;83249230	-	83243151	83249230	cassetteExon	ENSMUST00000179705.2	known	0.82	4.5	1	6;3	1	n	0.00	0.0	1	0;0	1	n	0.00	0.0	2	0;0	2	n	0.83	5.0	1	5;5	1	n	0.50	1.0	1	0;2	1	n	1.00	2.5	0	2;3	0	n	1.00	3.0	0	3;3	0	n	1.00	1.0	0	0;2	0	n	1.00	4.0	0	2;6	0	n	1.00	3.0	0	2;4	0	n	0.67	2.0	1	2;2	1	n	0.60	6.0	4	8;4	4	y	ENSMUSG00000075511.10	1700001L05Rik	chr15	lncRNA	RIKEN cDNA 1700001L05 gene
known_NIR_6648	chr15	83249711	83251191	-	83249714	83251191	A3SS	ENSMUST00000178628.9	known	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.18	2	9	2	9	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.75	3	1	3	1	n	0.17	1	5	1	5	n	0.50	1	1	1	1	n	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.38	3	5	3	5	n	ENSMUSG00000075511.10	1700001L05Rik	chr15	lncRNA	RIKEN cDNA 1700001L05 gene
known_NIR_6649	chr15	83263396	83265963	-	83263396;83264007	83263885;83265963	ES	ENSMUST00000171436.8	known	0.09	8	78.0	8	73;83	y	0.10	7	65.0	7	58;72	y	0.12	12	84.5	12	56;113	y	0.16	19	101.0	19	82;120	y	0.12	21	155.5	21	140;171	y	0.14	6	35.5	6	30;41	y	0.13	18	116.0	18	104;128	y	0.06	4	62.0	4	52;72	y	0.18	17	75.0	17	58;92	y	0.12	17	130.5	17	120;141	y	0.15	20	110.5	20	88;133	y	0.13	18	118.0	18	111;125	y	ENSMUSG00000016664.17	Pacsin2	chr15	protein_coding	protein kinase C and casein kinase substrate in neurons 2
known_NIR_6650	chr15	83286200	83316865	-	83286200	83348660	A5SS	ENSMUST00000171436.8	known	0.35	13	24	13	24	y	0.26	5	14	5	14	y	0.14	7	44	7	44	y	0.20	16	63	16	63	y	0.18	11	49	11	49	y	0.19	5	22	5	22	y	0.30	16	38	16	38	y	0.16	4	21	4	21	y	0.28	13	33	13	33	y	0.27	19	51	19	51	y	0.27	13	36	13	36	y	0.25	16	49	16	49	y	ENSMUSG00000016664.17	Pacsin2	chr15	protein_coding	protein kinase C and casein kinase substrate in neurons 2
known_NIR_6651	chr15	83286200	83316953	-	83286200	83316865	A5SS	ENSMUST00000165095.9	known	0.13	2	13	2	13	y	0.00	0	5	0	5	n	0.30	3	7	3	7	y	0.11	2	16	2	16	y	0.21	3	11	3	11	y	0.38	3	5	3	5	n	0.24	5	16	5	16	y	0.00	0	4	0	4	n	0.35	7	13	7	13	y	0.37	11	19	11	19	y	0.38	8	13	8	13	y	0.11	2	16	2	16	y	ENSMUSG00000016664.17	Pacsin2	chr15	protein_coding	protein kinase C and casein kinase substrate in neurons 2
known_NIR_6652	chr15	83286200	83316953	-	83286200	83348660	A5SS	ENSMUST00000171436.8	known	0.08	2	24	2	24	y	0.00	0	14	0	14	n	0.06	3	44	3	44	y	0.03	2	63	2	63	y	0.06	3	49	3	49	y	0.12	3	22	3	22	y	0.12	5	38	5	38	y	0.00	0	21	0	21	n	0.17	7	33	7	33	y	0.18	11	51	11	51	y	0.18	8	36	8	36	y	0.04	2	49	2	49	y	ENSMUSG00000016664.17	Pacsin2	chr15	protein_coding	protein kinase C and casein kinase substrate in neurons 2
known_NIR_6653	chr15	83286200	83337068	-	83286200	83316865	5pMXE	ENSMUST00000165095.9	known	0.13	2	13	2	13	y	0.29	2	5	2	5	n	0.00	0	7	0	7	n	0.00	0	16	0	16	n	0.08	1	11	1	11	n	0.17	1	5	1	5	n	0.20	4	16	4	16	y	0.33	2	4	2	4	n	0.24	4	13	4	13	y	0.21	5	19	5	19	y	0.00	0	13	0	13	n	0.24	5	16	5	16	y	ENSMUSG00000016664.17	Pacsin2	chr15	protein_coding	protein kinase C and casein kinase substrate in neurons 2
known_NIR_6654	chr15	83286200	83337068	-	83286200	83316953	5pMXE	ENSMUST00000231184.2	known	0.50	2	2	2	2	n	1.00	2	0	2	0	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.25	1	3	1	3	n	0.44	4	5	4	5	n	1.00	2	0	2	0	n	0.36	4	7	4	7	y	0.31	5	11	5	11	y	0.00	0	8	0	8	n	0.71	5	2	5	2	n	ENSMUSG00000016664.17	Pacsin2	chr15	protein_coding	protein kinase C and casein kinase substrate in neurons 2
known_NIR_6655	chr15	83286200;83337166	83337068;83348660	-	83286200	83348660	cassetteExon	ENSMUST00000171436.8	known	0.09	2.5	24	2;3	24	y	0.12	2.0	14	2;2	14	y	0.00	0.0	44	0;0	44	n	0.02	1.5	63	0;3	63	n	0.06	3.0	49	1;5	49	n	0.08	2.0	22	1;3	22	n	0.07	3.0	38	4;2	38	y	0.05	1.0	21	2;0	21	n	0.06	2.0	33	4;0	33	n	0.06	3.5	51	5;2	51	y	0.00	0.0	36	0;0	36	n	0.06	3.0	49	5;1	49	n	ENSMUSG00000016664.17	Pacsin2	chr15	protein_coding	protein kinase C and casein kinase substrate in neurons 2
known_NIR_6656	chr15	83411542	83425496	+	83411137	83425496	A5SS	ENSMUST00000016902.5	known	0.25	4	12	4	12	y	0.47	8	9	8	9	y	0.00	0	14	0	14	n	0.26	10	28	10	28	y	0.12	4	29	4	29	y	0.00	0	11	0	11	n	0.24	5	16	5	16	y	0.00	0	13	0	13	n	0.09	3	29	3	29	y	0.14	4	24	4	24	y	0.13	6	40	6	40	y	0.14	3	19	3	19	y	ENSMUSG00000016758.5	Bik	chr15	protein_coding	BCL2-interacting killer
known_NIR_6657	chr15	83417860	83425496	+	83411137	83425496	A5SS	ENSMUST00000016902.5	known	0.29	5	12	5	12	y	0.10	1	9	1	9	n	0.00	0	14	0	14	n	0.15	5	28	5	28	y	0.00	0	29	0	29	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.00	0	29	0	29	n	0.08	2	24	2	24	y	0.02	1	40	1	40	n	0.00	0	19	0	19	n	ENSMUSG00000016758.5	Bik	chr15	protein_coding	BCL2-interacting killer
known_NIR_6658	chr15	83417860	83425496	+	83411542	83425496	A5SS	ENSMUST00000230912.2	known	0.56	5	4	5	4	n	0.11	1	8	1	8	n	-	-	-	-	-	-	0.33	5	10	5	10	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.33	2	4	2	4	n	0.14	1	6	1	6	n	0.00	0	3	0	3	n	ENSMUSG00000016758.5	Bik	chr15	protein_coding	BCL2-interacting killer
known_NIR_6659	chr15	83432143	83436735	-	83432143;83433536	83433319;83436735	ES	ENSMUST00000061882.10	known	0.00	0	67.5	0	73;62	n	0.00	0	61.5	0	68;55	n	0.02	2	89.0	2	81;97	y	0.00	0	68.0	0	58;78	n	0.04	4	98.0	4	100;96	y	0.00	0	54.0	0	59;49	n	0.03	3	83.5	3	89;78	y	0.04	2	52.5	2	51;54	y	0.00	0	63.0	0	65;61	n	0.01	1	107.0	1	107;107	n	0.02	2	86.5	2	85;88	y	0.02	2	84.0	2	81;87	y	ENSMUSG00000048755.10	Mcat	chr15	protein_coding	malonyl CoA:ACP acyltransferase (mitochondrial)
known_NIR_6660	chr15	83432143	83436735	-	83433536	83436735	3pMXE	ENSMUST00000230094.2	known	0.00	0	62	0	62	n	0.00	0	55	0	55	n	0.02	2	97	2	97	y	0.00	0	78	0	78	n	0.04	4	96	4	96	y	0.00	0	49	0	49	n	0.04	3	78	3	78	y	0.04	2	54	2	54	y	0.00	0	61	0	61	n	0.01	1	107	1	107	n	0.02	2	88	2	88	y	0.02	2	87	2	87	y	ENSMUSG00000048755.10	Mcat	chr15	protein_coding	malonyl CoA:ACP acyltransferase (mitochondrial)
known_NIR_6661	chr15	83448289	83455586	+	83447845	83455586	A5SS	ENSMUST00000047419.8	known	0.00	1	222	1	222	n	0.03	7	238	7	238	y	0.01	5	350	5	350	y	0.02	4	229	4	229	y	0.02	7	305	7	305	y	0.01	2	202	2	202	y	0.01	3	295	3	295	y	0.01	2	194	2	194	y	0.01	2	191	2	191	y	0.01	2	308	2	308	y	0.03	7	223	7	223	y	0.01	3	244	3	244	y	ENSMUSG00000041736.8	Tspo	chr15	protein_coding	translocator protein
known_NIR_6662	chr15	84085485	84086431	+	84084918	84086431	A5SS	ENSMUST00000023071.8	known	0.00	0	144	0	144	n	0.00	0	107	0	107	n	0.00	0	167	0	167	n	0.00	0	148	0	148	n	0.01	1	185	1	185	n	0.00	0	75	0	75	n	0.01	2	179	2	179	y	0.01	1	110	1	110	n	0.00	0	127	0	127	n	0.00	0	203	0	203	n	0.01	1	176	1	176	n	0.00	0	194	0	194	n	ENSMUSG00000022437.8	Samm50	chr15	protein_coding	SAMM50 sorting and assembly machinery component
known_NIR_6663	chr15	84086688	84086970	+	84086559	84086970	A5SS	ENSMUST00000023071.8	known	0.01	2	275	2	275	y	0.02	5	281	5	281	y	0.00	0	303	0	303	n	0.00	0	313	0	313	n	0.01	3	339	3	339	y	0.01	2	182	2	182	y	0.01	3	395	3	395	y	0.00	0	182	0	182	n	0.00	1	244	1	244	n	0.00	0	377	0	377	n	0.00	0	323	0	323	n	0.00	0	337	0	337	n	ENSMUSG00000022437.8	Samm50	chr15	protein_coding	SAMM50 sorting and assembly machinery component
known_NIR_6664	chr15	84844822	84872711	-	84844822	84871810	5pMXE	ENSMUST00000047144.13	known	0.00	0	21	0	21	n	0.00	0	22	0	22	n	0.00	0	34	0	34	n	0.00	0	40	0	40	n	0.03	1	36	1	36	n	0.00	0	19	0	19	n	0.09	5	51	5	51	y	0.00	0	27	0	27	n	0.00	0	10	0	10	n	0.00	0	54	0	54	n	0.00	0	31	0	31	n	0.00	0	26	0	26	n	ENSMUSG00000036046.15	5031439G07Rik	chr15	protein_coding	RIKEN cDNA 5031439G07 gene
known_NIR_6665	chr15	85128507	85135646	+	85128507	85147460	A3SS	ENSMUST00000057410.14	known	1.00	4	0	4	0	n	0.50	2	2	2	2	n	0.38	3	5	3	5	n	0.40	2	3	2	3	n	0.65	11	6	11	6	y	-	-	-	-	-	-	0.39	9	14	9	14	y	-	-	-	-	-	-	-	-	-	-	-	-	0.43	3	4	3	4	n	0.73	8	3	8	3	y	1.00	2	0	2	0	n	ENSMUSG00000006369.15	Fbln1	chr15	protein_coding	fibulin 1
known_NIR_6666	chr15	85619847	85620995	+	85619346	85620995	A5SS	ENSMUST00000134880.8	known	0.00	0	2	0	2	n	0.29	2	5	2	5	n	0.75	3	1	3	1	n	0.00	0	9	0	9	n	0.25	4	12	4	12	y	0.00	0	1	0	1	n	0.12	1	7	1	7	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.78	7	2	7	2	n	0.60	3	2	3	2	n	ENSMUSG00000022383.14	Ppara	chr15	protein_coding	peroxisome proliferator activated receptor alpha
known_NIR_6667	chr15	85619914	85620995	+	85619346	85620995	A5SS	ENSMUST00000134880.8	known	0.50	2	2	2	2	n	0.17	1	5	1	5	n	0.88	7	1	7	1	n	0.40	6	9	6	9	y	0.43	9	12	9	12	y	0.88	7	1	7	1	n	0.50	7	7	7	7	y	1.00	8	0	8	0	n	0.67	6	3	6	3	n	0.67	6	3	6	3	n	0.71	5	2	5	2	n	0.71	5	2	5	2	n	ENSMUSG00000022383.14	Ppara	chr15	protein_coding	peroxisome proliferator activated receptor alpha
known_NIR_6668	chr15	85619914	85620995	+	85619847	85620995	A5SS	ENSMUST00000109423.8	known	1.00	2	0	2	0	n	0.33	1	2	1	2	n	0.70	7	3	7	3	y	1.00	6	0	6	0	n	0.69	9	4	9	4	y	1.00	7	0	7	0	n	0.88	7	1	7	1	n	1.00	8	0	8	0	n	1.00	6	0	6	0	n	1.00	6	0	6	0	n	0.42	5	7	5	7	y	0.62	5	3	5	3	n	ENSMUSG00000022383.14	Ppara	chr15	protein_coding	peroxisome proliferator activated receptor alpha
known_NIR_6669	chr15	85620297	85620995	+	85619346	85620995	A5SS	ENSMUST00000134880.8	known	0.96	53	2	53	2	y	0.91	49	5	49	5	y	0.98	63	1	63	1	n	0.92	103	9	103	9	y	0.90	111	12	111	12	y	0.97	39	1	39	1	n	0.93	87	7	87	7	y	1.00	53	0	53	0	n	0.96	77	3	77	3	y	0.98	144	3	144	3	y	0.97	70	2	70	2	y	0.98	95	2	95	2	y	ENSMUSG00000022383.14	Ppara	chr15	protein_coding	peroxisome proliferator activated receptor alpha
known_NIR_6670	chr15	85620297	85620995	+	85619847	85620995	A5SS	ENSMUST00000109423.8	known	1.00	53	0	53	0	n	0.96	49	2	49	2	y	0.95	63	3	63	3	y	1.00	103	0	103	0	n	0.97	111	4	111	4	y	1.00	39	0	39	0	n	0.99	87	1	87	1	n	1.00	53	0	53	0	n	1.00	77	0	77	0	n	1.00	144	0	144	0	n	0.91	70	7	70	7	y	0.97	95	3	95	3	y	ENSMUSG00000022383.14	Ppara	chr15	protein_coding	peroxisome proliferator activated receptor alpha
known_NIR_6671	chr15	85620297	85620995	+	85619914	85620995	A5SS	ENSMUST00000138813.8	known	0.96	53	2	53	2	y	0.98	49	1	49	1	n	0.90	63	7	63	7	y	0.94	103	6	103	6	y	0.93	111	9	111	9	y	0.85	39	7	39	7	y	0.93	87	7	87	7	y	0.87	53	8	53	8	y	0.93	77	6	77	6	y	0.96	144	6	144	6	y	0.93	70	5	70	5	y	0.95	95	5	95	5	y	ENSMUSG00000022383.14	Ppara	chr15	protein_coding	peroxisome proliferator activated receptor alpha
known_NIR_6672	chr15	85620373	85620995	+	85619346	85620995	A5SS	ENSMUST00000134880.8	known	0.93	26	2	26	2	y	0.81	22	5	22	5	y	0.92	11	1	11	1	n	0.84	48	9	48	9	y	0.81	51	12	51	12	y	0.88	7	1	7	1	n	0.86	44	7	44	7	y	1.00	12	0	12	0	n	0.92	33	3	33	3	y	0.96	77	3	77	3	y	0.97	65	2	65	2	y	0.97	67	2	67	2	y	ENSMUSG00000022383.14	Ppara	chr15	protein_coding	peroxisome proliferator activated receptor alpha
known_NIR_6673	chr15	85620373	85620995	+	85619847	85620995	A5SS	ENSMUST00000109423.8	known	1.00	26	0	26	0	n	0.92	22	2	22	2	y	0.79	11	3	11	3	y	1.00	48	0	48	0	n	0.93	51	4	51	4	y	1.00	7	0	7	0	n	0.98	44	1	44	1	n	1.00	12	0	12	0	n	1.00	33	0	33	0	n	1.00	77	0	77	0	n	0.90	65	7	65	7	y	0.96	67	3	67	3	y	ENSMUSG00000022383.14	Ppara	chr15	protein_coding	peroxisome proliferator activated receptor alpha
known_NIR_6674	chr15	85620373	85620995	+	85619914	85620995	A5SS	ENSMUST00000138813.8	known	0.93	26	2	26	2	y	0.96	22	1	22	1	n	0.61	11	7	11	7	y	0.89	48	6	48	6	y	0.85	51	9	51	9	y	0.50	7	7	7	7	y	0.86	44	7	44	7	y	0.60	12	8	12	8	y	0.85	33	6	33	6	y	0.93	77	6	77	6	y	0.93	65	5	65	5	y	0.93	67	5	67	5	y	ENSMUSG00000022383.14	Ppara	chr15	protein_coding	peroxisome proliferator activated receptor alpha
known_NIR_6675	chr15	85620373	85620995	+	85620297	85620995	A5SS	ENSMUST00000109422.8	known	0.33	26	53	26	53	y	0.31	22	49	22	49	y	0.15	11	63	11	63	y	0.32	48	103	48	103	y	0.31	51	111	51	111	y	0.15	7	39	7	39	y	0.34	44	87	44	87	y	0.18	12	53	12	53	y	0.30	33	77	33	77	y	0.35	77	144	77	144	y	0.48	65	70	65	70	y	0.41	67	95	67	95	y	ENSMUSG00000022383.14	Ppara	chr15	protein_coding	peroxisome proliferator activated receptor alpha
known_NIR_6676	chr15	85656482	85661722	+	85621079	85661722	A5SS	ENSMUST00000134880.8	known	0.15	17	94	17	94	y	0.10	9	80	9	80	y	0.36	40	72	40	72	y	0.10	20	174	20	174	y	0.11	22	181	22	181	y	0.24	11	35	11	35	y	0.19	31	136	31	136	y	0.12	11	82	11	82	y	0.06	7	106	7	106	y	0.12	29	219	29	219	y	0.14	23	147	23	147	y	0.06	11	159	11	159	y	ENSMUSG00000022383.14	Ppara	chr15	protein_coding	peroxisome proliferator activated receptor alpha
known_NIR_6677	chr15	85693525	85695840	-	85693525	85695103	A5SS&ES	ENSMUST00000144067.8	known	0.23	3	10	3	10	y	0.11	2	16	2	16	y	0.12	5	37	5	37	y	0.50	4	4	4	4	n	0.24	4	13	4	13	y	0.13	3	20	3	20	y	0.26	6	17	6	17	y	0.05	1	18	1	18	n	0.40	2	3	2	3	n	0.33	5	10	5	10	y	0.15	4	22	4	22	y	0.64	7	4	7	4	y	ENSMUSG00000064284.13	Cdpf1	chr15	protein_coding	cysteine rich, DPF motif domain containing 1
known_NIR_6678	chr15	85693525	85695840	-	85693525;85695249	85695103;85695840	ES	ENSMUST00000071876.13	known	0.26	3	8.5	3	10;7	y	0.13	2	13.5	2	16;11	y	0.15	5	29.0	5	37;21	y	0.47	4	4.5	4	4;5	y	0.25	4	12.0	4	13;11	y	0.13	3	20.0	3	20;20	y	0.34	6	11.5	6	17;6	y	0.08	1	11.0	1	18;4	n	0.40	2	3.0	2	3;3	n	0.32	5	10.5	5	10;11	y	0.24	4	13.0	4	22;4	y	0.56	7	5.5	7	4;7	y	ENSMUSG00000064284.13	Cdpf1	chr15	protein_coding	cysteine rich, DPF motif domain containing 1
known_NIR_6679	chr15	85695249	85695752	-	85695249	85695840	A5SS	ENSMUST00000071876.13	known	0.22	2	7	2	7	n	0.00	0	11	0	11	n	0.16	4	21	4	21	y	0.17	1	5	1	5	n	0.35	6	11	6	11	y	0.20	5	20	5	20	y	0.00	0	6	0	6	n	0.43	3	4	3	4	n	0.00	0	3	0	3	n	0.27	4	11	4	11	y	0.20	1	4	1	4	n	0.12	1	7	1	7	n	ENSMUSG00000064284.13	Cdpf1	chr15	protein_coding	cysteine rich, DPF motif domain containing 1
known_NIR_6680	chr15	85716620;85717269	85717177;85717348	+	85716620	85717348	cassetteExon	ENSMUST00000146088.8	known	0.03	1.5	47	1;2	47	n	0.05	1.5	30	3;0	30	n	0.00	0.0	40	0;0	40	n	0.04	5.5	121	7;4	121	y	0.04	3.5	92	4;3	92	y	0.03	1.5	46	1;2	46	n	0.02	2.0	93	2;2	93	y	0.05	2.0	40	2;2	40	y	0.02	1.5	71	1;2	71	n	0.02	2.5	109	2;3	109	y	0.04	2.5	60	3;2	60	y	0.02	2.0	117	2;2	117	y	ENSMUSG00000035944.18	Ttc38	chr15	protein_coding	tetratricopeptide repeat domain 38
known_NIR_6681	chr15	85718772	85720221	+	85718772	85725666	A3SS	ENSMUST00000124011.2	known	0.98	49	1	49	1	n	1.00	29	0	29	0	n	1.00	31	0	31	0	n	1.00	84	0	84	0	n	1.00	96	0	96	0	n	1.00	32	0	32	0	n	1.00	65	0	65	0	n	1.00	54	0	54	0	n	1.00	47	0	47	0	n	0.97	101	3	101	3	y	0.96	49	2	49	2	y	1.00	87	0	87	0	n	ENSMUSG00000035944.18	Ttc38	chr15	protein_coding	tetratricopeptide repeat domain 38
known_NIR_6682	chr15	85723080	85725666	+	85718772	85725666	A5SS	ENSMUST00000124011.2	known	0.99	71	1	71	1	n	1.00	46	0	46	0	n	1.00	40	0	40	0	n	1.00	104	0	104	0	n	1.00	113	0	113	0	n	1.00	50	0	50	0	n	1.00	90	0	90	0	n	1.00	51	0	51	0	n	1.00	78	0	78	0	n	0.98	141	3	141	3	y	0.98	80	2	80	2	y	1.00	114	0	114	0	n	ENSMUSG00000035944.18	Ttc38	chr15	protein_coding	tetratricopeptide repeat domain 38
known_NIR_6683	chr15	85763659;85765044	85764979;85766875	+	85763659	85766875	cassetteExon	ENSMUST00000162491.8	known	0.00	0.0	27	0;0	27	n	0.00	0.0	9	0;0	9	n	0.10	2.0	18	3;1	18	n	0.00	0.0	21	0;0	21	n	0.00	0.0	23	0;0	23	n	0.12	2.0	14	2;2	14	y	0.00	0.0	19	0;0	19	n	0.00	0.0	11	0;0	11	n	0.00	0.0	12	0;0	12	n	0.03	0.5	18	0;1	18	n	0.05	0.5	10	0;1	10	n	0.00	0.0	20	0;0	20	n	ENSMUSG00000022386.13	Trmu	chr15	protein_coding	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase
known_NIR_6684	chr15	85767040	85774406	+	85769393	85774406	5pMXE	ENSMUST00000162339.8	known	0.00	0	33	0	33	n	0.00	0	28	0	28	n	0.07	2	27	2	27	y	0.00	0	40	0	40	n	0.02	1	41	1	41	n	0.03	1	29	1	29	n	0.02	1	40	1	40	n	0.04	1	26	1	26	n	0.00	0	29	0	29	n	0.03	1	38	1	38	n	0.00	0	34	0	34	n	0.08	4	45	4	45	y	ENSMUSG00000022386.13	Trmu	chr15	protein_coding	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase
known_NIR_6685	chr15	85767040;85769393	85769287;85774406	+	85767040	85774406	cassetteExon	ENSMUST00000162491.8	known	1.00	27.0	0	21;33	0	n	1.00	27.0	0	26;28	0	n	0.92	23.5	2	20;27	2	y	1.00	34.5	0	29;40	0	n	0.97	38.5	1	36;41	1	n	0.96	24.5	1	20;29	1	n	0.97	32.5	1	25;40	1	n	0.95	19.0	1	12;26	1	n	1.00	25.0	0	21;29	0	n	0.97	33.0	1	28;38	1	n	1.00	34.0	0	34;34	0	n	0.91	40.0	4	35;45	4	y	ENSMUSG00000022386.13	Trmu	chr15	protein_coding	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase
known_NIR_6686	chr15	85774528	85776823	+	85774528	85776768	3pMXE	ENSMUST00000162491.8	known	0.00	0	17	0	17	n	0.00	0	16	0	16	n	0.10	3	27	3	27	y	0.00	0	30	0	30	n	0.25	6	18	6	18	y	0.05	1	18	1	18	n	0.00	0	19	0	19	n	0.09	1	10	1	10	n	0.09	2	20	2	20	y	0.04	1	26	1	26	n	0.20	4	16	4	16	y	0.09	2	21	2	21	y	ENSMUSG00000022386.13	Trmu	chr15	protein_coding	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase
known_NIR_6687	chr15	85778221	85779127	+	85778484	85779127	5pMXE	ENSMUST00000162010.8	known	0.92	33	3	33	3	y	0.93	26	2	26	2	y	1.00	31	0	31	0	n	0.88	30	4	30	4	y	0.85	22	4	22	4	y	0.79	23	6	23	6	y	0.92	33	3	33	3	y	1.00	21	0	21	0	n	0.96	24	1	24	1	n	1.00	35	0	35	0	n	0.89	17	2	17	2	y	1.00	44	0	44	0	n	ENSMUSG00000022386.13	Trmu	chr15	protein_coding	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase
known_NIR_6688	chr15	85778221;85778484	85778379;85779127	+	85778221	85779127	cassetteExon	ENSMUST00000023019.12	known	0.08	3.0	33	3;3	33	y	0.04	1.0	26	0;2	26	n	0.00	0.0	31	0;0	31	n	0.06	2.0	30	0;4	30	n	0.08	2.0	22	0;4	22	n	0.12	3.0	23	0;6	23	n	0.04	1.5	33	0;3	33	n	0.00	0.0	21	0;0	21	n	0.02	0.5	24	0;1	24	n	0.00	0.0	35	0;0	35	n	0.13	2.5	17	3;2	17	y	0.02	1.0	44	2;0	44	n	ENSMUSG00000022386.13	Trmu	chr15	protein_coding	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase
known_NIR_6689	chr15	85784939	85785138	-	85784906	85785138	A3SS	ENSMUST00000016172.10	known	0.70	26	11	26	11	y	0.74	20	7	20	7	y	0.58	7	5	7	5	y	0.65	17	9	17	9	y	0.71	25	10	25	10	y	0.60	9	6	9	6	y	0.64	16	9	16	9	y	0.72	23	9	23	9	y	0.80	8	2	8	2	y	0.67	6	3	6	3	n	0.79	15	4	15	4	y	0.62	10	6	10	6	y	ENSMUSG00000016028.12	Celsr1	chr15	protein_coding	cadherin, EGF LAG seven-pass G-type receptor 1
known_NIR_6690	chr15	85785870	85786316	-	85785873	85786316	A3SS	ENSMUST00000016172.10	known	0.24	9	29	9	29	y	0.15	4	22	4	22	y	0.00	0	11	0	11	n	0.17	4	19	4	19	y	0.27	10	27	10	27	y	0.38	5	8	5	8	y	0.06	1	15	1	15	n	0.14	3	18	3	18	y	0.29	2	5	2	5	n	0.20	4	16	4	16	y	0.17	4	19	4	19	y	0.29	4	10	4	10	y	ENSMUSG00000016028.12	Celsr1	chr15	protein_coding	cadherin, EGF LAG seven-pass G-type receptor 1
known_NIR_6691	chr15	86012914	86013821	+	86012914	86013851	A3SS	ENSMUST00000088931.10	known	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.25	3	9	3	9	y	0.25	1	3	1	3	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.08	1	11	1	11	n	0.20	2	8	2	8	y	0.20	1	4	1	4	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.20	1	4	1	4	n	ENSMUSG00000035900.19	Gramd4	chr15	protein_coding	GRAM domain containing 4
known_NIR_6692	chr15	88580877	88584976	-	88576087	88584976	A3SS	ENSMUST00000109381.9	known	0.00	0	37	0	37	n	0.00	0	36	0	36	n	0.15	9	53	9	53	y	0.02	1	44	1	44	n	0.04	2	51	2	51	y	0.05	1	21	1	21	n	0.00	0	42	0	42	n	0.00	0	28	0	28	n	0.00	0	27	0	27	n	0.00	0	59	0	59	n	0.00	0	22	0	22	n	0.02	1	49	1	49	n	ENSMUSG00000022387.18	Brd1	chr15	protein_coding	bromodomain containing 1
known_NIR_6693	chr15	88585080	88591237	-	88585473	88591237	A3SS	ENSMUST00000109381.9	known	0.45	9	11	9	11	y	0.54	13	11	13	11	y	0.50	13	13	13	13	y	0.48	13	14	13	14	y	0.48	21	23	21	23	y	0.50	7	7	7	7	y	0.61	25	16	25	16	y	0.38	5	8	5	8	y	0.60	6	4	6	4	y	0.31	11	25	11	25	y	0.58	19	14	19	14	y	0.44	14	18	14	18	y	ENSMUSG00000022387.18	Brd1	chr15	protein_coding	bromodomain containing 1
known_NIR_6694	chr15	88690924	88698632	-	88690924	88695500	A5SS&ES	ENSMUST00000160222.2	known	0.14	2	12	2	12	y	0.00	0	21	0	21	n	0.00	0	35	0	35	n	0.13	2	13	2	13	y	0.06	2	29	2	29	y	0.03	1	37	1	37	n	0.04	1	23	1	23	n	0.00	0	30	0	30	n	0.00	0	14	0	14	n	0.15	3	17	3	17	y	0.37	7	12	7	12	y	0.08	1	12	1	12	n	ENSMUSG00000035845.18	Alg12	chr15	protein_coding	asparagine-linked glycosylation 12 (alpha-1,6-mannosyltransferase)
known_NIR_6695	chr15	88700457	88703171	-	88700457	88703461	A5SS	ENSMUST00000162183.8	known	0.00	0	14	0	14	n	0.22	2	7	2	7	n	0.18	3	14	3	14	y	0.07	1	14	1	14	n	0.07	2	25	2	25	y	0.17	3	15	3	15	y	0.00	0	7	0	7	n	0.07	1	13	1	13	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.11	1	8	1	8	n	0.00	0	4	0	4	n	ENSMUSG00000035845.18	Alg12	chr15	protein_coding	asparagine-linked glycosylation 12 (alpha-1,6-mannosyltransferase)
known_NIR_6696	chr15	88955951	88959302	-	88955921	88959302	A3SS	ENSMUST00000161483.8	known	0.69	9	4	9	4	y	1.00	8	0	8	0	n	0.57	4	3	4	3	n	0.75	6	2	6	2	n	0.67	6	3	6	3	n	0.80	12	3	12	3	y	0.60	6	4	6	4	y	0.86	6	1	6	1	n	0.83	5	1	5	1	n	0.69	9	4	9	4	y	0.80	12	3	12	3	y	0.78	14	4	14	4	y	ENSMUSG00000087331.9	1810021B22Rik	chr15	lncRNA	RIKEN cDNA 1810021B22 gene
known_NIR_6697	chr15	88955951	88959302	-	88955951	88958276	5pMXE	ENSMUST00000162579.8	known	0.75	9	3	9	3	y	0.89	8	1	8	1	n	0.80	4	1	4	1	n	1.00	6	0	6	0	n	0.67	6	3	6	3	n	1.00	12	0	12	0	n	0.75	6	2	6	2	n	0.86	6	1	6	1	n	1.00	5	0	5	0	n	0.69	9	4	9	4	y	0.92	12	1	12	1	n	0.74	14	5	14	5	y	ENSMUSG00000087331.9	1810021B22Rik	chr15	lncRNA	RIKEN cDNA 1810021B22 gene
known_NIR_6698	chr15	88955951	88959302	-	88955951;88958401	88958276;88959302	ES	ENSMUST00000161735.8	known	0.69	9	4.0	9	3;5	y	0.73	8	3.0	8	1;5	n	0.80	4	1.0	4	1;1	n	0.86	6	1.0	6	0;2	n	0.67	6	3.0	6	3;3	y	1.00	12	0.0	12	0;0	n	0.71	6	2.5	6	2;3	y	0.92	6	0.5	6	1;0	n	0.77	5	1.5	5	0;3	n	0.72	9	3.5	9	4;3	y	0.83	12	2.5	12	1;4	n	0.74	14	5.0	14	5;5	y	ENSMUSG00000087331.9	1810021B22Rik	chr15	lncRNA	RIKEN cDNA 1810021B22 gene
known_NIR_6699	chr15	88960344	88965183	+	88959417	88965183	A5SS	ENSMUST00000168863.8	known	1.00	106	0	106	0	n	1.00	87	0	87	0	n	0.99	204	2	204	2	y	1.00	120	0	120	0	n	1.00	188	0	188	0	n	1.00	131	0	131	0	n	0.99	118	1	118	1	n	1.00	131	0	131	0	n	1.00	81	0	81	0	n	1.00	104	0	104	0	n	1.00	88	0	88	0	n	1.00	112	0	112	0	n	ENSMUSG00000015363.14	Trabd	chr15	protein_coding	TraB domain containing
known_NIR_6700	chr15	88960901	88965183	+	88959417	88965183	A5SS	ENSMUST00000168863.8	known	1.00	44	0	44	0	n	1.00	56	0	56	0	n	0.99	145	2	145	2	y	1.00	64	0	64	0	n	1.00	101	0	101	0	n	1.00	77	0	77	0	n	0.99	76	1	76	1	n	1.00	77	0	77	0	n	1.00	45	0	45	0	n	1.00	65	0	65	0	n	1.00	73	0	73	0	n	1.00	68	0	68	0	n	ENSMUSG00000015363.14	Trabd	chr15	protein_coding	TraB domain containing
known_NIR_6701	chr15	88960901	88965183	+	88960344	88965183	A5SS	ENSMUST00000081702.12	known	0.29	44	106	44	106	y	0.39	56	87	56	87	y	0.42	145	204	145	204	y	0.35	64	120	64	120	y	0.35	101	188	101	188	y	0.37	77	131	77	131	y	0.39	76	118	76	118	y	0.37	77	131	77	131	y	0.36	45	81	45	81	y	0.38	65	104	65	104	y	0.45	73	88	73	88	y	0.38	68	112	68	112	y	ENSMUSG00000015363.14	Trabd	chr15	protein_coding	TraB domain containing
known_NIR_6702	chr15	88965656	88966154	+	88965634	88966154	A5SS	ENSMUST00000168863.8	known	0.07	17	216	17	216	y	0.04	10	242	10	242	y	0.06	33	550	33	550	y	0.06	16	265	16	265	y	0.06	28	461	28	461	y	0.08	28	340	28	340	y	0.05	16	286	16	286	y	0.07	21	296	21	296	y	0.02	4	175	4	175	y	0.03	8	276	8	276	y	0.04	10	247	10	247	y	0.08	22	256	22	256	y	ENSMUSG00000015363.14	Trabd	chr15	protein_coding	TraB domain containing
known_NIR_6703	chr15	88969660	88969729	+	88969649	88969729	A5SS	ENSMUST00000081702.12	known	0.00	0	215	0	215	n	0.01	2	255	2	255	y	0.01	6	478	6	478	y	0.01	2	204	2	204	y	0.02	7	445	7	445	y	0.01	4	302	4	302	y	0.01	3	334	3	334	y	0.00	0	262	0	262	n	0.02	3	169	3	169	y	0.01	2	279	2	279	y	0.00	0	253	0	253	n	0.02	4	242	4	242	y	ENSMUSG00000015363.14	Trabd	chr15	protein_coding	TraB domain containing
known_NIR_6704	chr15	88977110	88978340	+	88977052	88978340	A5SS	ENSMUST00000130700.8	known	1.00	103	0	103	0	n	0.93	99	8	99	8	y	0.83	35	7	35	7	y	0.98	134	3	134	3	y	0.91	135	13	135	13	y	0.89	41	5	41	5	y	0.95	130	7	130	7	y	0.92	58	5	58	5	y	0.97	118	4	118	4	y	0.96	178	7	178	7	y	0.94	135	8	135	8	y	0.94	163	10	163	10	y	ENSMUSG00000035757.18	Selenoo	chr15	protein_coding	selenoprotein O
known_NIR_6705	chr15	88985488	88985572	-	88985488	88985565	A5SS	ENSMUST00000109353.9	known	0.14	2	12	2	12	y	0.00	0	9	0	9	n	0.08	2	22	2	22	y	0.04	1	26	1	26	n	0.08	2	23	2	23	y	0.00	0	13	0	13	n	0.00	0	23	0	23	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.00	0	25	0	25	n	0.00	0	15	0	15	n	0.00	0	12	0	12	n	ENSMUSG00000051786.16	Tubgcp6	chr15	protein_coding	tubulin, gamma complex associated protein 6
known_NIR_6706	chr15	88986369	88986457	-	88986372	88986457	A3SS	ENSMUST00000109353.9	known	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.05	1	18	1	18	n	0.00	0	9	0	9	n	0.08	1	12	1	12	n	0.17	2	10	2	10	y	0.07	1	13	1	13	n	0.25	2	6	2	6	n	0.00	0	2	0	2	n	0.07	1	13	1	13	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	ENSMUSG00000051786.16	Tubgcp6	chr15	protein_coding	tubulin, gamma complex associated protein 6
known_NIR_6707	chr15	89008631	89008735	-	89008456	89008735	A3SS	ENSMUST00000129398.8	known	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.07	2	25	2	25	y	0.00	0	15	0	15	n	0.00	0	33	0	33	n	0.00	0	11	0	11	n	0.06	1	15	1	15	n	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.00	0	25	0	25	n	0.11	3	25	3	25	y	0.00	0	17	0	17	n	ENSMUSG00000062906.13	Hdac10	chr15	protein_coding	histone deacetylase 10
known_NIR_6708	chr15	89010640	89010844	-	89010640	89010833	A5SS	ENSMUST00000129398.8	known	0.95	20	1	20	1	n	0.81	17	4	17	4	y	0.70	7	3	7	3	y	0.88	14	2	14	2	y	0.82	18	4	18	4	y	0.75	9	3	9	3	y	0.78	14	4	14	4	y	0.85	17	3	17	3	y	1.00	10	0	10	0	n	0.94	15	1	15	1	n	0.91	20	2	20	2	y	0.94	16	1	16	1	n	ENSMUSG00000062906.13	Hdac10	chr15	protein_coding	histone deacetylase 10
known_NIR_6709	chr15	89018929	89019630	-	89018929;89019373	89019326;89019630	ES	ENSMUST00000088827.8	known	0.00	0	1.5	0	2;1	n	0.00	0	5.5	0	5;6	n	0.17	2	10.0	2	10;10	y	0.00	0	3.5	0	4;3	n	0.00	0	10.0	0	11;9	n	0.00	0	4.0	0	5;3	n	0.03	1	31.0	1	32;30	n	0.00	0	6.0	0	7;5	n	0.00	0	2.5	0	2;3	n	0.00	0	6.5	0	7;6	n	0.00	0	10.5	0	12;9	n	0.23	3	10.0	3	10;10	y	ENSMUSG00000022610.11	Mapk12	chr15	protein_coding	mitogen-activated protein kinase 12
known_NIR_6710	chr15	89070464	89070957	-	89070464	89070566	A5SS	ENSMUST00000229935.2	known	0.06	1	15	1	15	n	0.06	1	16	1	16	n	0.17	1	5	1	5	n	0.05	1	19	1	19	n	0.08	1	11	1	11	n	0.00	0	4	0	4	n	0.03	1	29	1	29	n	0.00	0	5	0	5	n	0.07	1	14	1	14	n	0.00	0	10	0	10	n	0.00	0	28	0	28	n	0.20	2	8	2	8	y	ENSMUSG00000015377.11	Dennd6b	chr15	protein_coding	DENN/MADD domain containing 6B
known_NIR_6711	chr15	89070464	89070957	-	89070464;89070630	89070566;89070957	ES	ENSMUST00000078953.9	known	0.06	1	15.5	1	15;16	n	0.06	1	14.5	1	16;13	n	0.11	1	8.0	1	5;11	n	0.07	1	12.5	1	19;6	n	0.11	1	8.0	1	11;5	n	0.00	0	3.5	0	4;3	n	0.05	1	20.0	1	29;11	n	0.00	0	5.0	0	5;5	n	0.11	1	8.5	1	14;3	n	0.00	0	10.0	0	10;10	n	0.00	0	17.0	0	28;6	n	0.22	2	7.0	2	8;6	y	ENSMUSG00000015377.11	Dennd6b	chr15	protein_coding	DENN/MADD domain containing 6B
known_NIR_6712	chr15	89071201	89071351	-	89071253	89071351	A3SS	ENSMUST00000078953.9	known	0.10	1	9	1	9	n	0.00	0	12	0	12	n	0.20	1	4	1	4	n	0.14	1	6	1	6	n	0.00	0	7	0	7	n	0.14	1	6	1	6	n	0.18	2	9	2	9	y	0.62	5	3	5	3	n	0.22	2	7	2	7	n	0.00	0	9	0	9	n	0.20	1	4	1	4	n	0.00	0	10	0	10	n	ENSMUSG00000015377.11	Dennd6b	chr15	protein_coding	DENN/MADD domain containing 6B
known_NIR_6713	chr15	89075231;89077321	89077138;89080422	-	89075231	89080422	cassetteExon	ENSMUST00000078953.9	known	0.26	2.5	7	2;3	7	y	0.27	3.0	8	3;3	8	y	0.19	3.5	15	5;2	15	y	0.39	6.5	10	8;5	10	y	0.12	2.5	19	3;2	19	y	0.05	0.5	9	1;0	9	n	0.17	4.0	19	5;3	19	y	0.22	2.0	7	0;4	7	n	0.29	4.0	10	4;4	10	y	0.28	3.5	9	5;2	9	y	0.21	3.0	11	0;6	11	n	0.11	1.5	12	3;0	12	n	ENSMUSG00000015377.11	Dennd6b	chr15	protein_coding	DENN/MADD domain containing 6B
known_NIR_6714	chr15	89162987	89163923	+	89162987;89163556	89163476;89163923	ES	ENSMUST00000238818.2	known	0.65	25	13.5	25	11;16	y	0.83	29	6.0	29	8;4	y	0.91	40	4.0	40	3;5	y	0.69	38	17.0	38	20;14	y	0.74	38	13.5	38	12;15	y	0.81	26	6.0	26	5;7	y	0.71	58	24.0	58	21;27	y	0.84	26	5.0	26	5;5	y	0.82	39	8.5	39	9;8	y	0.80	58	14.5	58	14;15	y	0.63	25	14.5	25	10;19	y	0.77	43	12.5	43	12;13	y	ENSMUSG00000036561.10	Ppp6r2	chr15	protein_coding	protein phosphatase 6, regulatory subunit 2
known_NIR_6715	chr15	89172945	89173015	-	89172928	89173015	A3SS	ENSMUST00000123791.8	known	0.00	0	100	0	100	n	0.01	1	104	1	104	n	0.01	1	122	1	122	n	0.02	1	62	1	62	n	0.02	2	120	2	120	y	0.01	1	71	1	71	n	0.00	0	129	0	129	n	0.00	0	76	0	76	n	0.00	0	68	0	68	n	0.00	0	116	0	116	n	0.00	0	92	0	92	n	0.00	0	101	0	101	n	ENSMUSG00000036529.18	Sbf1	chr15	protein_coding	SET binding factor 1
known_NIR_6716	chr15	89177833	89177942	-	89177869	89177942	A3SS	ENSMUST00000123791.8	known	0.00	0	62	0	62	n	0.02	1	64	1	64	n	0.02	2	84	2	84	y	0.00	0	77	0	77	n	0.00	0	69	0	69	n	0.00	0	35	0	35	n	0.02	2	86	2	86	y	0.02	1	48	1	48	n	0.00	0	46	0	46	n	0.00	0	88	0	88	n	0.00	0	61	0	61	n	0.00	0	78	0	78	n	ENSMUSG00000036529.18	Sbf1	chr15	protein_coding	SET binding factor 1
known_NIR_6717	chr15	89179779;89180232	89180155;89183686	-	89179779	89183686	cassetteExon	ENSMUST00000123791.8	known	0.60	21.0	14	17;25	14	y	0.76	16.0	5	19;13	5	y	0.64	27.0	15	25;29	15	y	0.70	26.0	11	28;24	11	y	0.54	30.0	26	27;33	26	y	0.83	25.0	5	22;28	5	y	0.76	31.0	10	33;29	10	y	0.49	9.5	10	11;8	10	y	0.67	22.0	11	24;20	11	y	0.53	28.5	25	25;32	25	y	0.69	22.5	10	24;21	10	y	0.55	26.5	22	29;24	22	y	ENSMUSG00000036529.18	Sbf1	chr15	protein_coding	SET binding factor 1
known_NIR_6718	chr15	89189671	89189747	-	89189675	89189747	A3SS	ENSMUST00000123791.8	known	0.00	0	17	0	17	n	0.00	0	11	0	11	n	0.00	0	27	0	27	n	0.04	1	26	1	26	n	0.00	0	42	0	42	n	0.04	1	24	1	24	n	0.07	2	27	2	27	y	0.09	2	21	2	21	y	0.00	0	10	0	10	n	0.06	2	29	2	29	y	0.00	0	13	0	13	n	0.09	2	21	2	21	y	ENSMUSG00000036529.18	Sbf1	chr15	protein_coding	SET binding factor 1
known_NIR_6719	chr15	89240129	89244559	+	89240053	89244559	A5SS	ENSMUST00000036987.12	known	0.74	17	6	17	6	y	0.59	16	11	16	11	y	0.64	16	9	16	9	y	0.67	14	7	14	7	y	0.55	22	18	22	18	y	0.73	11	4	11	4	y	0.57	13	10	13	10	y	0.86	12	2	12	2	y	0.59	13	9	13	9	y	0.66	23	12	23	12	y	0.52	14	13	14	13	y	0.67	18	9	18	9	y	ENSMUSG00000008690.16	Ncaph2	chr15	protein_coding	non-SMC condensin II complex, subunit H2
known_NIR_6720	chr15	89240129	89244559	+	89240146	89244559	A5SS	ENSMUST00000074552.12	known	0.21	17	64	17	64	y	0.23	16	55	16	55	y	0.17	16	76	16	76	y	0.16	14	76	14	76	y	0.24	22	70	22	70	y	0.21	11	41	11	41	y	0.14	13	79	13	79	y	0.23	12	40	12	40	y	0.22	13	47	13	47	y	0.21	23	89	23	89	y	0.19	14	60	14	60	y	0.16	18	95	18	95	y	ENSMUSG00000008690.16	Ncaph2	chr15	protein_coding	non-SMC condensin II complex, subunit H2
known_NIR_6721	chr15	89240146	89244559	+	89240053	89244559	A5SS	ENSMUST00000036987.12	known	0.91	64	6	64	6	y	0.83	55	11	55	11	y	0.89	76	9	76	9	y	0.92	76	7	76	7	y	0.80	70	18	70	18	y	0.91	41	4	41	4	y	0.89	79	10	79	10	y	0.95	40	2	40	2	y	0.84	47	9	47	9	y	0.88	89	12	89	12	y	0.82	60	13	60	13	y	0.91	95	9	95	9	y	ENSMUSG00000008690.16	Ncaph2	chr15	protein_coding	non-SMC condensin II complex, subunit H2
known_NIR_6722	chr15	89254691	89254804	+	89254691	89254807	A3SS	ENSMUST00000036987.12	known	0.19	18	75	18	75	y	0.17	19	96	19	96	y	0.16	19	103	19	103	y	0.17	23	110	23	110	y	0.13	17	109	17	109	y	0.16	9	48	9	48	y	0.20	24	98	24	98	y	0.12	7	50	7	50	y	0.11	11	89	11	89	y	0.16	27	141	27	141	y	0.18	26	122	26	122	y	0.19	24	101	24	101	y	ENSMUSG00000008690.16	Ncaph2	chr15	protein_coding	non-SMC condensin II complex, subunit H2
known_NIR_6723	chr15	89263052	89263147	-	89263052	89263273	A5SS	ENSMUST00000049968.9	known	0.29	2	5	2	5	n	0.08	1	11	1	11	n	0.50	2	2	2	2	n	0.00	0	8	0	8	n	0.17	3	15	3	15	y	0.17	1	5	1	5	n	0.23	3	10	3	10	y	0.00	0	8	0	8	n	0.33	3	6	3	6	n	0.31	4	9	4	9	y	0.00	0	8	0	8	n	0.14	1	6	1	6	n	ENSMUSG00000047394.10	Odf3b	chr15	protein_coding	outer dense fiber of sperm tails 3B
known_NIR_6724	chr15	89311602	89311764	-	89311630	89311764	A3SS	ENSMUST00000052315.13	known	0.19	26	110	26	110	y	0.17	29	146	29	146	y	0.21	35	135	35	135	y	0.25	33	98	33	98	y	0.18	40	177	40	177	y	0.22	24	83	24	83	y	0.20	46	186	46	186	y	0.21	22	81	22	81	y	0.17	19	94	19	94	y	0.17	33	160	33	160	y	0.21	38	144	38	144	y	0.20	34	133	34	133	y	ENSMUSG00000116461.2	Gm44502	chr15	protein_coding	predicted readthrough transcript (NMD candidate), 44502
known_NIR_6725	chr15	89312396	89312614	-	89312432	89312614	A3SS	ENSMUST00000052315.13	known	0.00	0	114	0	114	n	0.00	0	103	0	103	n	0.02	3	135	3	135	y	0.00	0	100	0	100	n	0.00	0	176	0	176	n	0.00	0	78	0	78	n	0.00	0	141	0	141	n	0.03	2	78	2	78	y	0.00	0	94	0	94	n	0.01	1	150	1	150	n	0.00	0	116	0	116	n	0.00	0	136	0	136	n	ENSMUSG00000116461.2	Gm44502	chr15	protein_coding	predicted readthrough transcript (NMD candidate), 44502
known_NIR_6726	chr15	89312781	89312917	-	89312747	89312917	A3SS	ENSMUST00000023289.13	known	0.31	11	25	11	25	y	0.11	3	24	3	24	y	0.24	8	25	8	25	y	0.07	2	27	2	27	y	0.27	13	35	13	35	y	0.27	6	16	6	16	y	0.17	11	55	11	55	y	0.24	6	19	6	19	y	0.23	11	36	11	36	y	0.20	15	60	15	60	y	0.27	10	27	10	27	y	0.25	12	36	12	36	y	ENSMUSG00000022617.16	Chkb	chr15	protein_coding	choline kinase beta
known_NIR_6727	chr15	90110057	90111676	+	90110057	90111527	A3SS	ENSMUST00000100309.3	known	0.36	5	9	5	9	y	0.33	3	6	3	6	n	0.00	0	32	0	32	n	0.15	5	29	5	29	y	0.00	0	36	0	36	n	0.26	5	14	5	14	y	0.05	1	19	1	19	n	0.04	1	25	1	25	n	0.05	1	19	1	19	n	0.10	3	28	3	28	y	0.11	1	8	1	8	n	0.09	3	31	3	31	y	ENSMUSG00000075470.3	Alg10b	chr15	protein_coding	asparagine-linked glycosylation 10B (alpha-1,2-glucosyltransferase)
known_NIR_6728	chr15	90469144;90486092	90486016;90499314	-	90469144	90499314	cassetteExon	ENSMUST00000088649.11	known	0.78	7.0	2	10;4	2	y	0.75	3.0	1	3;3	1	n	0.81	43.5	10	48;39	10	y	0.75	6.0	2	4;8	2	y	0.90	17.5	2	18;17	2	y	1.00	10.5	0	10;11	0	n	0.79	7.5	2	6;9	2	y	0.73	5.5	2	5;6	2	y	0.71	5.0	2	4;6	2	y	0.64	10.5	6	8;13	6	y	0.78	7.0	2	9;5	2	y	0.64	7.0	4	6;8	4	y	ENSMUSG00000052560.16	Cpne8	chr15	protein_coding	copine VIII
known_NIR_6729	chr15	90527916	90532781	-	90503938	90532781	A3SS	ENSMUST00000088649.11	known	0.83	58	12	58	12	y	0.96	80	3	80	3	y	0.85	322	56	322	56	y	0.92	54	5	54	5	y	0.89	85	10	85	10	y	0.91	125	13	125	13	y	0.86	94	15	94	15	y	0.84	69	13	69	13	y	0.72	26	10	26	10	y	0.73	47	17	47	17	y	0.93	38	3	38	3	y	0.84	43	8	43	8	y	ENSMUSG00000052560.16	Cpne8	chr15	protein_coding	copine VIII
known_NIR_6730	chr15	9075469	9083350	+	9071845	9083350	A5SS	ENSMUST00000190591.10	known	0.00	0	113	0	113	n	0.00	0	84	0	84	n	0.00	0	130	0	130	n	0.00	0	220	0	220	n	0.07	17	224	17	224	y	0.07	7	98	7	98	y	0.00	0	136	0	136	n	0.00	0	92	0	92	n	0.07	9	113	9	113	y	0.00	0	235	0	235	n	0.07	10	139	10	139	y	0.00	0	218	0	218	n	ENSMUSG00000022253.18	Nadk2	chr15	protein_coding	NAD kinase 2, mitochondrial
known_NIR_6731	chr15	90828104	90832527	-	90828104	90835449	A5SS	ENSMUST00000230487.2	known	0.05	1	19	1	19	n	0.00	0	9	0	9	n	0.02	2	81	2	81	y	0.00	0	18	0	18	n	0.15	4	23	4	23	y	0.00	0	40	0	40	n	0.09	2	20	2	20	y	0.10	3	26	3	26	y	0.00	0	15	0	15	n	0.00	0	17	0	17	n	0.06	1	16	1	16	n	0.14	3	19	3	19	y	ENSMUSG00000022629.18	Kif21a	chr15	protein_coding	kinesin family member 21A
known_NIR_6732	chr15	90828104	90832527	-	90828104	90840498	A5SS	ENSMUST00000109287.4	known	0.14	1	6	1	6	n	0.00	0	3	0	3	n	0.18	2	9	2	9	y	0.00	0	10	0	10	n	0.29	4	10	4	10	y	0.00	0	8	0	8	n	0.25	2	6	2	6	n	0.50	3	3	3	3	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.09	1	10	1	10	n	0.60	3	2	3	2	n	ENSMUSG00000022629.18	Kif21a	chr15	protein_coding	kinesin family member 21A
known_NIR_6733	chr15	90828104	90835449	-	90828104;90833247	90833209;90835449	ES	ENSMUST00000100304.11	known	1.00	19	0.0	19	0;0	n	1.00	9	0.0	9	0;0	n	0.96	81	3.5	81	4;3	y	0.97	18	0.5	18	1;0	n	0.88	23	3.0	23	3;3	y	0.99	40	0.5	40	1;0	n	0.95	20	1.0	20	2;0	n	0.96	26	1.0	26	0;2	n	1.00	15	0.0	15	0;0	n	1.00	17	0.0	17	0;0	n	0.97	16	0.5	16	0;1	n	0.90	19	2.0	19	1;3	n	ENSMUSG00000022629.18	Kif21a	chr15	protein_coding	kinesin family member 21A
known_NIR_6734	chr15	90828104	90840498	-	90828104	90835449	5pMXE	ENSMUST00000230487.2	known	0.24	6	19	6	19	y	0.25	3	9	3	9	y	0.10	9	81	9	81	y	0.36	10	18	10	18	y	0.30	10	23	10	23	y	0.17	8	40	8	40	y	0.23	6	20	6	20	y	0.10	3	26	3	26	y	0.21	4	15	4	15	y	0.26	6	17	6	17	y	0.38	10	16	10	16	y	0.10	2	19	2	19	y	ENSMUSG00000022629.18	Kif21a	chr15	protein_coding	kinesin family member 21A
known_NIR_6735	chr15	90828104;90835577	90835449;90840498	-	90828104	90840498	cassetteExon	ENSMUST00000109287.4	known	0.61	9.5	6	19;0	6	n	0.60	4.5	3	9;0	3	n	0.83	43.5	9	81;6	9	y	0.49	9.5	10	18;1	10	n	0.53	11.5	10	23;0	10	n	0.72	20.5	8	40;1	8	n	0.62	10.0	6	20;0	6	n	0.81	13.0	3	26;0	3	n	0.67	8.0	4	15;1	4	n	0.59	8.5	6	17;0	6	n	0.44	8.0	10	16;0	10	n	0.85	11.0	2	19;3	2	y	ENSMUSG00000022629.18	Kif21a	chr15	protein_coding	kinesin family member 21A
known_NIR_6736	chr15	90835577	90840498	-	90835577;90837021	90836914;90840498	ES	ENSMUST00000100304.11	known	0.00	0	19.0	0	16;22	n	0.00	0	15.0	0	7;23	n	0.07	6	82.5	6	71;94	y	0.03	1	30.0	1	15;45	n	0.00	0	27.5	0	16;39	n	0.03	1	33.5	1	28;39	n	0.00	0	21.5	0	14;29	n	0.00	0	26.0	0	23;29	n	0.04	1	26.0	1	10;42	n	0.00	0	23.5	0	12;35	n	0.00	0	12.5	0	11;14	n	0.11	3	24.5	3	11;38	y	ENSMUSG00000022629.18	Kif21a	chr15	protein_coding	kinesin family member 21A
known_NIR_6737	chr15	90837021	90840498	-	90828104	90840498	A3SS	ENSMUST00000109287.4	known	0.79	22	6	22	6	y	0.88	23	3	23	3	y	0.91	94	9	94	9	y	0.82	45	10	45	10	y	0.80	39	10	39	10	y	0.83	39	8	39	8	y	0.83	29	6	29	6	y	0.91	29	3	29	3	y	0.91	42	4	42	4	y	0.85	35	6	35	6	y	0.58	14	10	14	10	y	0.95	38	2	38	2	y	ENSMUSG00000022629.18	Kif21a	chr15	protein_coding	kinesin family member 21A
known_NIR_6738	chr15	9084352	9085805	+	9084330	9085805	A5SS	ENSMUST00000190591.10	known	0.00	0	196	0	196	n	0.00	0	149	0	149	n	0.01	2	212	2	212	y	0.00	0	329	0	329	n	0.01	2	320	2	320	y	0.00	0	149	0	149	n	0.00	1	299	1	299	n	0.00	0	177	0	177	n	0.01	3	208	3	208	y	0.00	0	464	0	464	n	0.01	2	218	2	218	y	0.00	0	379	0	379	n	ENSMUSG00000022253.18	Nadk2	chr15	protein_coding	NAD kinase 2, mitochondrial
known_NIR_6739	chr15	90843951;90849198	90849178;90849670	-	90843951	90849670	cassetteExon	ENSMUST00000109288.9	known	0.00	0.0	37	0;0	37	n	0.03	1.0	34	1;1	34	n	0.02	3.5	145	5;2	145	y	0.03	1.5	48	1;2	48	n	0.00	0.0	70	0;0	70	n	0.01	0.5	56	1;0	56	n	0.10	5.5	50	6;5	50	y	0.00	0.0	65	0;0	65	n	0.00	0.0	50	0;0	50	n	0.01	0.5	67	0;1	67	n	0.03	1.0	31	1;1	31	n	0.00	0.0	72	0;0	72	n	ENSMUSG00000022629.18	Kif21a	chr15	protein_coding	kinesin family member 21A
known_NIR_6740	chr15	9085886	9092803	+	9085886	9091255	3pMXE	ENSMUST00000228397.3	known	0.01	2	206	2	206	y	0.02	3	181	3	181	y	0.02	5	250	5	250	y	0.02	7	359	7	359	y	0.00	0	352	0	352	n	0.01	1	176	1	176	n	0.02	5	294	5	294	y	0.02	5	210	5	210	y	0.01	2	251	2	251	y	0.02	10	477	10	477	y	0.01	3	256	3	256	y	0.02	8	431	8	431	y	ENSMUSG00000022253.18	Nadk2	chr15	protein_coding	NAD kinase 2, mitochondrial
known_NIR_6741	chr15	9085886	9092803	+	9085886;9091338	9091255;9092803	ES	ENSMUST00000190591.10	known	0.01	2	217.5	2	206;229	y	0.02	3	174.5	3	181;168	y	0.02	5	245.0	5	250;240	y	0.02	7	324.5	7	359;290	y	0.00	0	345.0	0	352;338	n	0.01	1	150.0	1	176;124	n	0.02	5	293.5	5	294;293	y	0.02	5	197.5	5	210;185	y	0.01	2	242.0	2	251;233	y	0.02	10	429.5	10	477;382	y	0.01	3	260.5	3	256;265	y	0.02	8	381.5	8	431;332	y	ENSMUSG00000022253.18	Nadk2	chr15	protein_coding	NAD kinase 2, mitochondrial
known_NIR_6742	chr15	9096181	9100195	+	9096181;9098963	9098898;9100195	ES	ENSMUST00000190591.10	known	0.49	94	99.5	94	112;87	y	0.44	46	59.0	46	60;58	y	0.42	66	92.0	66	112;72	y	0.49	117	120.5	117	120;121	y	0.44	120	152.5	120	175;130	y	0.43	48	64.0	48	68;60	y	0.51	118	114.5	118	123;106	y	0.48	74	81.5	74	85;78	y	0.42	81	110.5	81	113;108	y	0.43	129	173.0	129	177;169	y	0.47	89	102.0	89	108;96	y	0.47	156	176.0	156	179;173	y	ENSMUSG00000022253.18	Nadk2	chr15	protein_coding	NAD kinase 2, mitochondrial
known_NIR_6743	chr15	9106940	9108309	+	9106940	9108307	A3SS	ENSMUST00000190591.10	known	0.00	1	290	1	290	n	0.01	3	200	3	200	y	0.00	0	290	0	290	n	0.01	3	368	3	368	y	0.01	2	386	2	386	y	0.00	0	139	0	139	n	0.00	0	379	0	379	n	0.00	0	211	0	211	n	0.01	2	340	2	340	y	0.00	1	498	1	498	n	0.00	0	368	0	368	n	0.00	2	476	2	476	y	ENSMUSG00000022253.18	Nadk2	chr15	protein_coding	NAD kinase 2, mitochondrial
known_NIR_6744	chr15	9172327	9175346	+	9172327	9175211	A3SS	ENSMUST00000227556.3	known	0.00	0	8	0	8	n	0.50	2	2	2	2	n	0.14	3	19	3	19	y	0.12	4	29	4	29	y	0.16	6	32	6	32	y	0.00	0	15	0	15	n	0.14	3	19	3	19	y	0.17	4	19	4	19	y	0.12	1	7	1	7	n	0.08	2	23	2	23	y	0.16	3	16	3	16	y	0.10	2	19	2	19	y	ENSMUSG00000039704.9	Lmbrd2	chr15	protein_coding	LMBR1 domain containing 2
known_NIR_6745	chr15	9280133	9284161	+	9277044	9284161	A5SS	ENSMUST00000175695.9	known	1.00	93	0	93	0	n	1.00	60	0	60	0	n	0.88	22	3	22	3	y	0.99	162	2	162	2	y	1.00	93	0	93	0	n	1.00	17	0	17	0	n	1.00	109	0	109	0	n	0.95	54	3	54	3	y	1.00	98	0	98	0	n	0.99	220	3	220	3	y	0.99	114	1	114	1	n	0.99	134	1	134	1	n	ENSMUSG00000072664.12	Ugt3a1	chr15	protein_coding	UDP glycosyltransferases 3 family, polypeptide A1
known_NIR_6746	chr15	9284101	9306161	+	9284259	9306161	A5SS&ES	ENSMUST00000175695.9	known	0.00	0	24	0	24	n	0.00	0	25	0	25	n	0.00	0	11	0	11	n	0.00	0	26	0	26	n	0.00	0	19	0	19	n	0.00	0	10	0	10	n	0.00	0	38	0	38	n	0.00	0	28	0	28	n	0.09	2	20	2	20	y	0.00	0	65	0	65	n	0.00	0	16	0	16	n	0.00	0	30	0	30	n	ENSMUSG00000072664.12	Ugt3a1	chr15	protein_coding	UDP glycosyltransferases 3 family, polypeptide A1
known_NIR_6747	chr15	9284259	9306161	+	9284259	9292062	3pMXE	ENSMUST00000176878.2	known	0.16	24	130	24	130	y	0.17	25	119	25	119	y	0.24	11	34	11	34	y	0.10	26	241	26	241	y	0.14	19	119	19	119	y	0.26	10	28	10	28	y	0.17	38	186	38	186	y	0.27	28	77	28	77	y	0.14	20	124	20	124	y	0.17	65	324	65	324	y	0.11	16	135	16	135	y	0.15	30	171	30	171	y	ENSMUSG00000072664.12	Ugt3a1	chr15	protein_coding	UDP glycosyltransferases 3 family, polypeptide A1
known_NIR_6748	chr15	9284259;9292176	9292062;9306161	+	9284259	9306161	cassetteExon	ENSMUST00000175695.9	known	0.84	130.0	24	130;130	24	y	0.81	109.5	25	119;100	25	y	0.75	32.5	11	34;31	11	y	0.90	232.0	26	241;223	26	y	0.86	118.5	19	119;118	19	y	0.77	33.5	10	28;39	10	y	0.83	181.5	38	186;177	38	y	0.74	81.0	28	77;85	28	y	0.87	134.5	20	124;145	20	y	0.84	331.0	65	324;338	65	y	0.90	143.0	16	135;151	16	y	0.86	185.5	30	171;200	30	y	ENSMUSG00000072664.12	Ugt3a1	chr15	protein_coding	UDP glycosyltransferases 3 family, polypeptide A1
known_NIR_6749	chr15	9292176	9306161	+	9284101	9306161	A5SS	ENSMUST00000145326.2	known	1.00	130	0	130	0	n	1.00	100	0	100	0	n	1.00	31	0	31	0	n	1.00	223	0	223	0	n	1.00	118	0	118	0	n	1.00	39	0	39	0	n	1.00	177	0	177	0	n	1.00	85	0	85	0	n	0.99	145	2	145	2	y	1.00	338	0	338	0	n	1.00	151	0	151	0	n	1.00	200	0	200	0	n	ENSMUSG00000072664.12	Ugt3a1	chr15	protein_coding	UDP glycosyltransferases 3 family, polypeptide A1
known_NIR_6750	chr15	93159799;93163844	93163752;93172757	-	93159799	93172757	cassetteExon	ENSMUST00000049484.13	known	0.00	0.0	4	0;0	4	n	0.00	0.0	1	0;0	1	n	0.45	5.0	6	5;5	6	y	0.12	1.5	11	3;0	11	n	0.43	4.5	6	4;5	6	y	0.33	2.5	5	2;3	5	y	0.17	1.0	5	0;2	5	n	0.09	0.5	5	0;1	5	n	1.00	1.0	0	1;1	0	n	0.60	3.0	2	5;1	2	n	0.20	0.5	2	1;0	2	n	0.26	2.5	7	4;1	7	n	ENSMUSG00000036197.17	Gxylt1	chr15	protein_coding	glucoside xylosyltransferase 1
known_NIR_6751	chr15	93184443;93215489	93215420;93234221	-	93184443	93234221	cassetteExon	ENSMUST00000080299.7	known	0.36	16.0	29	20;12	29	y	0.41	17.5	25	21;14	25	y	0.23	15.0	49	14;16	49	y	0.26	16.0	46	11;21	46	y	0.21	13.5	50	13;14	50	y	0.16	6.5	35	6;7	35	y	0.37	22.5	39	26;19	39	y	0.20	6.0	24	6;6	24	y	0.47	18.0	20	18;18	20	y	0.33	26.0	54	32;20	54	y	0.40	17.5	26	16;19	26	y	0.22	11.0	40	8;14	40	y	ENSMUSG00000022634.10	Yaf2	chr15	protein_coding	YY1 associated factor 2
known_NIR_6752	chr15	93284167	93285458	-	93284164	93285458	A3SS	ENSMUST00000162160.8	known	0.92	158	14	158	14	y	0.94	202	12	202	12	y	0.94	192	13	192	13	y	0.96	133	5	133	5	y	0.94	203	12	203	12	y	0.96	96	4	96	4	y	0.92	233	21	233	21	y	0.90	71	8	71	8	y	0.92	144	12	144	12	y	0.92	239	21	239	21	y	0.90	173	20	173	20	y	0.93	190	14	190	14	y	ENSMUSG00000022635.10	Zcrb1	chr15	protein_coding	zinc finger CCHC-type and RNA binding motif 1
known_NIR_6753	chr15	93289446;93291645	93291588;93293468	-	93289446	93293468	cassetteExon	ENSMUST00000162160.8	known	0.06	6.5	96	6;7	96	y	0.08	7.0	83	6;8	83	y	0.06	6.5	105	8;5	105	y	0.15	15.5	90	20;11	90	y	0.08	12.0	131	11;13	131	y	0.07	4.0	57	6;2	57	y	0.11	17.0	140	17;17	140	y	0.07	2.5	35	2;3	35	y	0.05	4.0	69	6;2	69	y	0.04	5.0	131	6;4	131	y	0.13	15.5	105	18;13	105	y	0.04	5.0	111	6;4	111	y	ENSMUSG00000022635.10	Zcrb1	chr15	protein_coding	zinc finger CCHC-type and RNA binding motif 1
known_NIR_6754	chr15	93297374	93308573	+	93296342	93308573	A5SS	ENSMUST00000109256.11	known	0.15	2	11	2	11	y	0.50	2	2	2	2	n	0.12	2	14	2	14	y	0.17	2	10	2	10	y	0.41	7	10	7	10	y	0.12	1	7	1	7	n	0.31	5	11	5	11	y	0.24	4	13	4	13	y	0.27	3	8	3	8	y	0.38	3	5	3	5	n	0.23	3	10	3	10	y	0.27	3	8	3	8	y	ENSMUSG00000036167.17	Pphln1	chr15	protein_coding	periphilin 1
known_NIR_6755	chr15	93308664	93321895	+	93308664	93318165	3pMXE	ENSMUST00000230385.2	known	0.80	12	3	12	3	y	1.00	5	0	5	0	n	0.57	12	9	12	9	y	0.50	6	6	6	6	y	0.73	19	7	19	7	y	0.29	2	5	2	5	n	0.91	10	1	10	1	n	0.83	10	2	10	2	y	0.67	6	3	6	3	n	0.93	13	1	13	1	n	0.83	15	3	15	3	y	0.91	21	2	21	2	y	ENSMUSG00000036167.17	Pphln1	chr15	protein_coding	periphilin 1
known_NIR_6756	chr15	93308664;93318371	93318165;93321895	+	93308664	93321895	cassetteExon	ENSMUST00000109256.11	known	0.20	3.0	12	3;3	12	y	0.29	2.0	5	0;4	5	n	0.37	7.0	12	9;5	12	y	0.40	4.0	6	6;2	6	y	0.28	7.5	19	7;8	19	y	0.69	4.5	2	5;4	2	y	0.20	2.5	10	1;4	10	n	0.23	3.0	10	2;4	10	y	0.33	3.0	6	3;3	6	y	0.32	6.0	13	1;11	13	n	0.17	3.0	15	3;3	15	y	0.05	1.0	21	2;0	21	n	ENSMUSG00000036167.17	Pphln1	chr15	protein_coding	periphilin 1
known_NIR_6757	chr15	93339593;93350054	93349998;93353332	+	93339593	93353332	cassetteExon	ENSMUST00000109256.11	known	0.75	15.0	5	15;15	5	y	0.92	11.5	1	10;13	1	n	0.58	19.5	14	21;18	14	y	0.73	22.0	8	25;19	8	y	0.69	17.5	8	17;18	8	y	0.70	11.5	5	9;14	5	y	0.69	18.0	8	20;16	8	y	0.45	9.0	11	9;9	11	y	0.86	19.0	3	21;17	3	y	0.90	28.0	3	32;24	3	y	0.87	13.0	2	15;11	2	y	0.76	18.5	6	21;16	6	y	ENSMUSG00000036167.17	Pphln1	chr15	protein_coding	periphilin 1
known_NIR_6758	chr15	94484417	94487633	-	94484417;94486186	94486109;94487633	ES	ENSMUST00000023087.13	known	0.05	3	59.5	3	63;56	y	0.02	1	55.5	1	57;54	n	0.00	0	91.5	0	102;81	n	0.00	0	93.5	0	109;78	n	0.01	2	136.5	2	159;114	y	0.05	3	52.5	3	58;47	y	0.00	0	91.0	0	108;74	n	0.02	1	59.5	1	72;47	n	0.03	2	65.5	2	71;60	y	0.08	8	90.0	8	110;70	y	0.02	1	52.5	1	60;45	n	0.01	1	86.0	1	96;76	n	ENSMUSG00000022451.13	Twf1	chr15	protein_coding	twinfilin actin binding protein 1
known_NIR_6759	chr15	96313030	96313658	-	96313032	96313658	A3SS	ENSMUST00000047835.8	known	0.00	0	52	0	52	n	0.03	2	70	2	70	y	0.00	0	53	0	53	n	0.00	0	57	0	57	n	0.00	0	72	0	72	n	0.00	0	42	0	42	n	0.01	1	69	1	69	n	0.00	0	26	0	26	n	0.00	0	59	0	59	n	0.00	0	98	0	98	n	0.00	0	52	0	52	n	0.00	0	82	0	82	n	ENSMUSG00000033228.9	Scaf11	chr15	protein_coding	SR-related CTD-associated factor 11
known_NIR_6760	chr15	96313032	96313658	-	96313032	96313610	A5SS	ENSMUST00000228072.2	known	0.57	52	40	52	40	y	0.71	70	29	70	29	y	0.58	53	39	53	39	y	0.72	57	22	57	22	y	0.74	72	25	72	25	y	0.72	42	16	42	16	y	0.77	69	21	69	21	y	0.57	26	20	26	20	y	0.73	59	22	59	22	y	0.78	98	27	98	27	y	0.69	52	23	52	23	y	0.78	82	23	82	23	y	ENSMUSG00000033228.9	Scaf11	chr15	protein_coding	SR-related CTD-associated factor 11
known_NIR_6761	chr15	96330305	96341826	-	96330305;96332878	96332801;96341826	ES	ENSMUST00000047835.8	known	0.00	0	27.5	0	29;26	n	0.00	0	17.5	0	23;12	n	0.00	0	53.5	0	66;41	n	0.00	0	62.0	0	69;55	n	0.00	0	67.0	0	76;58	n	0.00	0	33.5	0	36;31	n	0.00	0	47.5	0	55;40	n	0.00	0	34.5	0	36;33	n	0.00	0	46.0	0	47;45	n	0.02	1	49.0	1	54;44	n	0.00	0	29.5	0	34;25	n	0.03	2	58.0	2	64;52	y	ENSMUSG00000033228.9	Scaf11	chr15	protein_coding	SR-related CTD-associated factor 11
known_NIR_6762	chr15	96336231	96341826	-	96332878	96341826	A3SS	ENSMUST00000047835.8	known	0.04	1	26	1	26	n	0.00	0	12	0	12	n	0.00	0	41	0	41	n	0.00	0	55	0	55	n	0.00	0	58	0	58	n	0.00	0	31	0	31	n	0.00	0	40	0	40	n	0.00	0	33	0	33	n	0.04	2	45	2	45	y	0.00	0	44	0	44	n	0.04	1	25	1	25	n	0.02	1	52	1	52	n	ENSMUSG00000033228.9	Scaf11	chr15	protein_coding	SR-related CTD-associated factor 11
known_NIR_6763	chr15	96917742	96918184	-	96917742	96953736	A5SS	ENSMUST00000023101.10	known	0.91	107	11	107	11	y	0.88	45	6	45	6	y	0.82	132	28	132	28	y	0.96	151	6	151	6	y	0.91	142	14	142	14	y	0.83	44	9	44	9	y	0.91	106	10	106	10	y	0.91	77	8	77	8	y	0.96	52	2	52	2	y	0.93	94	7	94	7	y	0.96	47	2	47	2	y	0.94	80	5	80	5	y	ENSMUSG00000022464.15	Slc38a4	chr15	protein_coding	solute carrier family 38, member 4
known_NIR_6764	chr15	96917742	96929015	-	96917742	96918184	5pMXE	ENSMUST00000166223.2	known	0.85	600	107	600	107	y	0.90	404	45	404	45	y	0.64	233	132	233	132	y	0.88	1156	151	1156	151	y	0.86	874	142	874	142	y	0.86	263	44	263	44	y	0.86	638	106	638	106	y	0.86	458	77	458	77	y	0.94	811	52	811	52	y	0.93	1188	94	1188	94	y	0.93	635	47	635	47	y	0.95	1510	80	1510	80	y	ENSMUSG00000022464.15	Slc38a4	chr15	protein_coding	solute carrier family 38, member 4
known_NIR_6765	chr15	96917742	96929015	-	96917742	96953736	A5SS	ENSMUST00000023101.10	known	0.98	600	11	600	11	y	0.99	404	6	404	6	y	0.89	233	28	233	28	y	0.99	1156	6	1156	6	y	0.98	874	14	874	14	y	0.97	263	9	263	9	y	0.98	638	10	638	10	y	0.98	458	8	458	8	y	1.00	811	2	811	2	y	0.99	1188	7	1188	7	y	1.00	635	2	635	2	y	1.00	1510	5	1510	5	y	ENSMUSG00000022464.15	Slc38a4	chr15	protein_coding	solute carrier family 38, member 4
known_NIR_6766	chr15	96917742	96947831	-	96917742	96918184	5pMXE	ENSMUST00000166223.2	known	0.44	83	107	83	107	y	0.54	53	45	53	45	y	0.08	12	132	12	132	y	0.60	223	151	223	151	y	0.21	37	142	37	142	y	0.20	11	44	11	44	y	0.34	54	106	54	106	y	0.13	12	77	12	77	y	0.70	121	52	121	52	y	0.59	133	94	133	94	y	0.68	102	47	102	47	y	0.78	285	80	285	80	y	ENSMUSG00000022464.15	Slc38a4	chr15	protein_coding	solute carrier family 38, member 4
known_NIR_6767	chr15	96917742	96947831	-	96917742	96929015	5pMXE	ENSMUST00000230086.2	known	0.12	83	600	83	600	y	0.12	53	404	53	404	y	0.05	12	233	12	233	y	0.16	223	1156	223	1156	y	0.04	37	874	37	874	y	0.04	11	263	11	263	y	0.08	54	638	54	638	y	0.03	12	458	12	458	y	0.13	121	811	121	811	y	0.10	133	1188	133	1188	y	0.14	102	635	102	635	y	0.16	285	1510	285	1510	y	ENSMUSG00000022464.15	Slc38a4	chr15	protein_coding	solute carrier family 38, member 4
known_NIR_6768	chr15	96917742	96947831	-	96917742	96953736	A5SS	ENSMUST00000023101.10	known	0.88	83	11	83	11	y	0.90	53	6	53	6	y	0.30	12	28	12	28	y	0.97	223	6	223	6	y	0.73	37	14	37	14	y	0.55	11	9	11	9	y	0.84	54	10	54	10	y	0.60	12	8	12	8	y	0.98	121	2	121	2	y	0.95	133	7	133	7	y	0.98	102	2	102	2	y	0.98	285	5	285	5	y	ENSMUSG00000022464.15	Slc38a4	chr15	protein_coding	solute carrier family 38, member 4
known_NIR_6769	chr15	97259216	97281906	+	97259216	97271837	A3SS&ES	ENSMUST00000059433.8	known	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.33	3	6	3	6	n	0.00	0	1	0	1	n	0.29	2	5	2	5	n	0.00	0	5	0	5	n	0.20	2	8	2	8	y	ENSMUSG00000044250.9	Pced1b	chr15	protein_coding	PC-esterase domain containing 1B
known_NIR_6770	chr15	97862160	97862721	+	97862216	97862721	A5SS	ENSMUST00000229428.2	known	0.00	0	25	0	25	n	0.05	1	19	1	19	n	0.00	0	26	0	26	n	0.00	0	31	0	31	n	0.00	0	40	0	40	n	0.00	0	26	0	26	n	0.05	2	35	2	35	y	0.04	1	23	1	23	n	0.00	0	28	0	28	n	0.05	2	37	2	37	y	0.03	1	31	1	31	n	0.00	0	44	0	44	n	ENSMUSG00000052369.9	Tmem106c	chr15	protein_coding	transmembrane protein 106C
known_NIR_6771	chr15	97862160	97862721	+	97862384	97862721	A5SS	ENSMUST00000064200.9	known	0.00	0	7	0	7	n	0.12	1	7	1	7	n	0.00	0	13	0	13	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.11	2	16	2	16	y	0.09	1	10	1	10	n	0.00	0	9	0	9	n	0.13	2	13	2	13	y	0.07	1	14	1	14	n	0.00	0	15	0	15	n	ENSMUSG00000052369.9	Tmem106c	chr15	protein_coding	transmembrane protein 106C
known_NIR_6772	chr15	97862216	97862721	+	97862205	97862721	A5SS	ENSMUST00000229433.2	known	0.93	25	2	25	2	y	0.79	19	5	19	5	y	0.87	26	4	26	4	y	0.94	31	2	31	2	y	0.95	40	2	40	2	y	0.93	26	2	26	2	y	1.00	35	0	35	0	n	0.92	23	2	23	2	y	0.93	28	2	28	2	y	0.90	37	4	37	4	y	0.97	31	1	31	1	n	0.90	44	5	44	5	y	ENSMUSG00000052369.9	Tmem106c	chr15	protein_coding	transmembrane protein 106C
known_NIR_6773	chr15	97862360	97862721	+	97862216	97862721	A5SS	ENSMUST00000229428.2	known	0.00	0	25	0	25	n	0.17	4	19	4	19	y	0.00	0	26	0	26	n	0.06	2	31	2	31	y	0.02	1	40	1	40	n	0.04	1	26	1	26	n	0.03	1	35	1	35	n	0.04	1	23	1	23	n	0.00	0	28	0	28	n	0.07	3	37	3	37	y	0.00	0	31	0	31	n	0.02	1	44	1	44	n	ENSMUSG00000052369.9	Tmem106c	chr15	protein_coding	transmembrane protein 106C
known_NIR_6774	chr15	97862360	97862721	+	97862384	97862721	A5SS	ENSMUST00000064200.9	known	0.00	0	7	0	7	n	0.36	4	7	4	7	y	0.00	0	13	0	13	n	0.13	2	13	2	13	y	0.10	1	9	1	9	n	0.12	1	7	1	7	n	0.06	1	16	1	16	n	0.09	1	10	1	10	n	0.00	0	9	0	9	n	0.19	3	13	3	13	y	0.00	0	14	0	14	n	0.06	1	15	1	15	n	ENSMUSG00000052369.9	Tmem106c	chr15	protein_coding	transmembrane protein 106C
known_NIR_6775	chr15	97862384	97862721	+	97862205	97862721	A5SS	ENSMUST00000229433.2	known	0.78	7	2	7	2	n	0.58	7	5	7	5	y	0.76	13	4	13	4	y	0.87	13	2	13	2	y	0.82	9	2	9	2	y	0.78	7	2	7	2	n	1.00	16	0	16	0	n	0.83	10	2	10	2	y	0.82	9	2	9	2	y	0.76	13	4	13	4	y	0.93	14	1	14	1	n	0.75	15	5	15	5	y	ENSMUSG00000052369.9	Tmem106c	chr15	protein_coding	transmembrane protein 106C
known_NIR_6776	chr15	97862384	97862721	+	97862216	97862721	A5SS	ENSMUST00000229428.2	known	0.22	7	25	7	25	y	0.27	7	19	7	19	y	0.33	13	26	13	26	y	0.30	13	31	13	31	y	0.18	9	40	9	40	y	0.21	7	26	7	26	y	0.31	16	35	16	35	y	0.30	10	23	10	23	y	0.24	9	28	9	28	y	0.26	13	37	13	37	y	0.31	14	31	14	31	y	0.25	15	44	15	44	y	ENSMUSG00000052369.9	Tmem106c	chr15	protein_coding	transmembrane protein 106C
known_NIR_6777	chr15	97862911	97863950	+	97862911	97864128	A3SS	ENSMUST00000229433.2	known	0.02	1	46	1	46	n	0.00	0	32	0	32	n	0.04	1	23	1	23	n	0.04	2	44	2	44	y	0.00	0	66	0	66	n	0.00	0	23	0	23	n	0.02	1	62	1	62	n	0.00	0	23	0	23	n	0.00	0	43	0	43	n	0.02	2	79	2	79	y	0.00	0	57	0	57	n	0.00	0	49	0	49	n	ENSMUSG00000052369.9	Tmem106c	chr15	protein_coding	transmembrane protein 106C
known_NIR_6778	chr15	97957835	97962700	-	97957835	97959831	5pMXE	ENSMUST00000181855.8	known	0.50	1	1	1	1	n	1.00	7	0	7	0	n	0.83	10	2	10	2	y	0.33	2	4	2	4	n	0.30	3	7	3	7	y	0.00	0	1	0	1	n	0.38	6	10	6	10	y	0.90	9	1	9	1	n	0.62	5	3	5	3	n	1.00	10	0	10	0	n	0.67	4	2	4	2	n	1.00	7	0	7	0	n	ENSMUSG00000033075.18	Senp1	chr15	protein_coding	SUMO1/sentrin specific peptidase 1
known_NIR_6779	chr15	97957835;97959908	97959831;97962700	-	97957835	97962700	cassetteExon	ENSMUST00000044189.16	known	0.33	0.5	1	1;0	1	n	0.18	1.5	7	0;3	7	n	0.23	3.0	10	2;4	10	y	0.60	3.0	2	4;2	2	n	0.71	7.5	3	7;8	3	y	1.00	1.5	0	1;2	0	n	0.57	8.0	6	10;6	6	y	0.14	1.5	9	1;2	9	n	0.29	2.0	5	3;1	5	n	0.00	0.0	10	0;0	10	n	0.27	1.5	4	2;1	4	n	0.07	0.5	7	0;1	7	n	ENSMUSG00000033075.18	Senp1	chr15	protein_coding	SUMO1/sentrin specific peptidase 1
known_NIR_6780	chr15	97985014	97990529	-	97985014	97991164	A5SS	ENSMUST00000044189.16	known	1.00	4	0	4	0	n	-	-	-	-	-	-	0.75	3	1	3	1	n	0.20	2	8	2	8	y	0.71	5	2	5	2	n	1.00	2	0	2	0	n	0.50	4	4	4	4	n	0.50	3	3	3	3	n	1.00	2	0	2	0	n	1.00	4	0	4	0	n	1.00	1	0	1	0	n	0.60	3	2	3	2	n	ENSMUSG00000033075.18	Senp1	chr15	protein_coding	SUMO1/sentrin specific peptidase 1
known_NIR_6781	chr15	98040695	98043482	-	98040691	98043482	A3SS	ENSMUST00000059112.12	known	0.50	10	10	10	10	y	0.68	13	6	13	6	y	0.80	39	10	39	10	y	0.62	24	15	24	15	y	0.71	40	16	40	16	y	0.65	24	13	24	13	y	0.60	34	23	34	23	y	0.62	28	17	28	17	y	0.62	13	8	13	8	y	0.76	32	10	32	10	y	0.70	14	6	14	6	y	0.80	36	9	36	9	y	ENSMUSG00000048175.14	Asb8	chr15	protein_coding	ankyrin repeat and SOCS box-containing 8
known_NIR_6782	chr15	98418306	98422442	-	98418306	98422340	A5SS	ENSMUST00000230542.2	known	0.24	10	32	10	32	y	0.07	4	50	4	50	y	0.06	4	68	4	68	y	0.13	6	41	6	41	y	0.11	6	49	6	49	y	0.20	6	24	6	24	y	0.19	18	76	18	76	y	0.10	3	26	3	26	y	0.09	6	60	6	60	y	0.09	8	82	8	82	y	0.05	2	37	2	37	y	0.11	6	51	6	51	y	ENSMUSG00000022992.18	Kansl2	chr15	protein_coding	KAT8 regulatory NSL complex subunit 2
known_NIR_6783	chr15	98427334	98429601	-	98427334;98429318	98429204;98429601	ES	ENSMUST00000230542.2	known	0.09	5	52.0	5	48;56	y	0.02	1	44.0	1	37;51	n	0.07	6	84.0	6	96;72	y	0.02	1	60.5	1	57;64	n	0.08	8	87.5	8	86;89	y	0.08	3	36.0	3	33;39	y	0.10	7	65.5	7	71;60	y	0.04	2	53.5	2	53;54	y	0.13	9	59.0	9	53;65	y	0.14	11	70.0	11	66;74	y	0.09	5	50.0	5	56;44	y	0.07	5	69.5	5	66;73	y	ENSMUSG00000022992.18	Kansl2	chr15	protein_coding	KAT8 regulatory NSL complex subunit 2
known_NIR_6784	chr15	98431657	98432122	-	98431657	98431783	A5SS	ENSMUST00000230542.2	known	0.04	1	23	1	23	n	0.00	0	25	0	25	n	0.00	0	46	0	46	n	0.06	3	47	3	47	y	0.02	1	58	1	58	n	0.16	3	16	3	16	y	0.00	0	46	0	46	n	0.00	0	25	0	25	n	0.03	1	35	1	35	n	0.01	1	66	1	66	n	0.00	0	33	0	33	n	0.04	2	43	2	43	y	ENSMUSG00000022992.18	Kansl2	chr15	protein_coding	KAT8 regulatory NSL complex subunit 2
known_NIR_6785	chr15	98556316	98560659	-	98556316	98560704	A5SS	ENSMUST00000003450.15	known	0.11	6	48	6	48	y	0.22	5	18	5	18	y	0.08	5	57	5	57	y	0.06	4	67	4	67	y	0.07	6	78	6	78	y	0.04	1	25	1	25	n	0.08	4	49	4	49	y	0.00	0	48	0	48	n	0.06	4	58	4	58	y	0.08	5	59	5	59	y	0.09	3	30	3	30	y	0.11	8	63	8	63	y	ENSMUSG00000003360.16	Ddx23	chr15	protein_coding	DEAD box helicase 23
known_NIR_6786	chr15	98568723	98570392	-	98561771	98570392	A3SS	ENSMUST00000109149.9	known	0.91	29	3	29	3	y	0.80	12	3	12	3	y	0.95	37	2	37	2	y	0.96	46	2	46	2	y	0.96	23	1	23	1	n	1.00	4	0	4	0	n	0.97	32	1	32	1	n	0.96	24	1	24	1	n	0.92	47	4	47	4	y	0.92	35	3	35	3	y	1.00	27	0	27	0	n	1.00	23	0	23	0	n	ENSMUSG00000054855.14	Rnd1	chr15	protein_coding	Rho family GTPase 1
known_NIR_6787	chr15	98640710	98660606	-	98640710	98660861	A5SS	ENSMUST00000053183.12	known	0.00	0	38	0	38	n	0.00	0	38	0	38	n	0.01	1	68	1	68	n	0.00	0	49	0	49	n	0.00	0	89	0	89	n	0.00	0	50	0	50	n	0.00	0	66	0	66	n	0.00	0	31	0	31	n	0.00	0	42	0	42	n	0.04	2	54	2	54	y	0.00	0	42	0	42	n	0.00	0	61	0	61	n	ENSMUSG00000051853.11	Arf3	chr15	protein_coding	ADP-ribosylation factor 3
known_NIR_6788	chr15	98723614	98728768	-	98723614	98729311	A5SS	ENSMUST00000168846.3	known	0.00	0	36	0	36	n	0.09	2	21	2	21	y	0.06	2	33	2	33	y	0.08	3	33	3	33	y	0.02	1	45	1	45	n	0.00	0	22	0	22	n	0.06	2	29	2	29	y	0.00	0	20	0	20	n	0.00	0	22	0	22	n	0.02	1	43	1	43	n	0.03	1	35	1	35	n	0.11	4	33	4	33	y	ENSMUSG00000067713.8	Prkag1	chr15	protein_coding	protein kinase, AMP-activated, gamma 1 non-catalytic subunit
known_NIR_6789	chr15	98733348;98734509	98734462;98734956	-	98733348	98734956	cassetteExon	ENSMUST00000178486.9	known	0.00	0.0	53	0;0	53	n	0.02	0.5	27	1;0	27	n	0.00	0.0	37	0;0	37	n	0.03	0.5	18	1;0	18	n	0.05	2.5	47	3;2	47	y	0.00	0.0	21	0;0	21	n	0.02	1.0	40	1;1	40	n	0.07	2.0	25	2;2	25	y	0.00	0.0	27	0;0	27	n	0.01	0.5	44	0;1	44	n	0.00	0.0	22	0;0	22	n	0.00	0.0	43	0;0	43	n	ENSMUSG00000048154.18	Kmt2d	chr15	protein_coding	lysine (K)-specific methyltransferase 2D
known_NIR_6790	chr15	98753779	98753950	-	98753779	98753959	A5SS	ENSMUST00000178486.9	known	0.50	1	1	1	1	n	0.30	3	7	3	7	y	0.38	3	5	3	5	n	0.40	2	3	2	3	n	0.00	0	8	0	8	n	0.33	2	4	2	4	n	0.10	1	9	1	9	n	0.00	0	10	0	10	n	1.00	2	0	2	0	n	0.00	0	9	0	9	n	0.50	1	1	1	1	n	0.08	1	11	1	11	n	ENSMUSG00000048154.18	Kmt2d	chr15	protein_coding	lysine (K)-specific methyltransferase 2D
known_NIR_6791	chr15	98813102	98813464	-	98813102	98815731	A5SS	ENSMUST00000023736.10	known	0.04	1	24	1	24	n	0.00	0	22	0	22	n	0.06	2	30	2	30	y	0.03	1	32	1	32	n	0.00	0	43	0	43	n	0.12	1	7	1	7	n	0.00	0	25	0	25	n	0.00	0	21	0	21	n	0.00	0	30	0	30	n	0.00	0	45	0	45	n	0.00	0	28	0	28	n	0.00	0	36	0	36	n	ENSMUSG00000022999.16	Lmbr1l	chr15	protein_coding	limb region 1 like
known_NIR_6792	chr15	98813102	98815022	-	98813102	98815731	A5SS	ENSMUST00000023736.10	known	0.00	0	24	0	24	n	0.00	0	22	0	22	n	0.00	0	30	0	30	n	0.06	2	32	2	32	y	0.00	0	43	0	43	n	0.00	0	7	0	7	n	0.07	2	25	2	25	y	0.00	0	21	0	21	n	0.00	0	30	0	30	n	0.04	2	45	2	45	y	0.00	0	28	0	28	n	0.03	1	36	1	36	n	ENSMUSG00000022999.16	Lmbr1l	chr15	protein_coding	limb region 1 like
known_NIR_6793	chr15	98997481	98998704	+	98997194	98998704	A5SS	ENSMUST00000146173.2	known	0.97	225	7	225	7	y	0.97	207	6	207	6	y	0.98	392	7	392	7	y	0.98	311	6	311	6	y	0.98	507	8	507	8	y	0.98	306	5	306	5	y	0.99	379	5	379	5	y	0.98	279	7	279	7	y	0.97	246	8	246	8	y	0.98	434	8	434	8	y	0.98	269	5	269	5	y	0.98	388	9	388	9	y	ENSMUSG00000038009.8	Dnajc22	chr15	protein_coding	DnaJ heat shock protein family (Hsp40) member C22
known_NIR_6794	chr15	99147887	99148344	-	99147895	99148344	A3SS	ENSMUST00000041190.17	known	0.09	1	10	1	10	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	30	0	30	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.14	3	19	3	19	y	0.00	0	11	0	11	n	0.00	0	18	0	18	n	ENSMUSG00000037570.17	Mcrs1	chr15	protein_coding	microspherule protein 1
known_NIR_6795	chr15	99147895	99149743	-	99147895	99148344	A5SS&ES	ENSMUST00000229359.2	known	0.00	0	10	0	10	n	0.18	3	14	3	14	y	0.13	2	13	2	13	y	0.00	0	9	0	9	n	0.03	1	30	1	30	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.18	3	14	3	14	y	0.00	0	10	0	10	n	0.10	2	19	2	19	y	0.00	0	11	0	11	n	0.05	1	18	1	18	n	ENSMUSG00000037570.17	Mcrs1	chr15	protein_coding	microspherule protein 1
known_NIR_6796	chr15	99147895	99149743	-	99147895;99148463	99148344;99149743	ES	ENSMUST00000041190.17	known	0.00	0	13.0	0	10;16	n	0.25	3	9.0	3	14;4	y	0.13	2	13.0	2	13;13	y	0.00	0	17.5	0	9;26	n	0.03	1	36.5	1	30;43	n	0.00	0	9.5	0	6;13	n	0.00	0	16.0	0	10;22	n	0.16	3	15.5	3	14;17	y	0.00	0	9.5	0	10;9	n	0.08	2	22.0	2	19;25	y	0.00	0	12.5	0	11;14	n	0.05	1	18.0	1	18;18	n	ENSMUSG00000037570.17	Mcrs1	chr15	protein_coding	microspherule protein 1
known_NIR_6797	chr15	99147895	99149743	-	99148463	99149743	A3SS&ES	ENSMUST00000229926.2	known	0.00	0	16	0	16	n	0.43	3	4	3	4	n	0.13	2	13	2	13	y	0.00	0	26	0	26	n	0.02	1	43	1	43	n	0.00	0	13	0	13	n	0.00	0	22	0	22	n	0.15	3	17	3	17	y	0.00	0	9	0	9	n	0.07	2	25	2	25	y	0.00	0	14	0	14	n	0.05	1	18	1	18	n	ENSMUSG00000037570.17	Mcrs1	chr15	protein_coding	microspherule protein 1
known_NIR_6798	chr15	99148463	99149603	-	99148463	99149743	A5SS	ENSMUST00000041190.17	known	0.00	0	16	0	16	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.00	0	26	0	26	n	0.00	0	43	0	43	n	0.00	0	13	0	13	n	0.04	1	22	1	22	n	0.00	0	17	0	17	n	0.18	2	9	2	9	y	0.00	0	25	0	25	n	0.00	0	14	0	14	n	0.00	0	18	0	18	n	ENSMUSG00000037570.17	Mcrs1	chr15	protein_coding	microspherule protein 1
known_NIR_6799	chr15	99202371	99203289	+	99202371;99203074	99203047;99203289	ES	ENSMUST00000128352.8	known	0.27	3	8.0	3	8;8	y	0.57	4	3.0	4	4;2	y	0.30	4	9.5	4	10;9	y	0.34	5	9.5	5	7;12	y	0.10	3	27.5	3	32;23	y	0.00	0	8.0	0	7;9	n	0.42	5	7.0	5	6;8	y	0.48	6	6.5	6	7;6	y	0.27	3	8.0	3	9;7	y	0.29	6	15.0	6	13;17	y	0.00	0	11.5	0	11;12	n	0.32	6	12.5	6	15;10	y	ENSMUSG00000023007.16	Prpf40b	chr15	protein_coding	pre-mRNA processing factor 40B
known_NIR_6800	chr15	99213167	99213364	+	99213167	99213361	A3SS	ENSMUST00000150641.8	known	0.44	14	18	14	18	y	0.74	17	6	17	6	y	0.53	19	17	19	17	y	0.64	14	8	14	8	y	0.57	20	15	20	15	y	0.56	9	7	9	7	y	0.64	16	9	16	9	y	0.61	17	11	17	11	y	0.56	14	11	14	11	y	0.53	9	8	9	8	y	0.66	21	11	21	11	y	0.47	15	17	15	17	y	ENSMUSG00000023007.16	Prpf40b	chr15	protein_coding	pre-mRNA processing factor 40B
known_NIR_6801	chr15	99213462	99213604	+	99213450	99213604	A5SS	ENSMUST00000150641.8	known	0.14	4	24	4	24	y	0.00	0	13	0	13	n	0.00	0	20	0	20	n	0.00	0	28	0	28	n	0.13	4	27	4	27	y	0.12	2	15	2	15	y	0.10	3	28	3	28	y	0.04	1	22	1	22	n	0.00	0	14	0	14	n	0.13	4	27	4	27	y	0.05	1	21	1	21	n	0.17	5	25	5	25	y	ENSMUSG00000023007.16	Prpf40b	chr15	protein_coding	pre-mRNA processing factor 40B
known_NIR_6802	chr15	99290921	99291576	+	99290921	99302295	A3SS	ENSMUST00000229392.2	known	0.86	19	3	19	3	y	1.00	14	0	14	0	n	0.84	16	3	16	3	y	0.88	23	3	23	3	y	0.90	35	4	35	4	y	1.00	12	0	12	0	n	0.70	19	8	19	8	y	0.80	16	4	16	4	y	0.79	22	6	22	6	y	0.86	38	6	38	6	y	0.74	17	6	17	6	y	0.79	30	8	30	8	y	ENSMUSG00000023010.16	Tmbim6	chr15	protein_coding	transmembrane BAX inhibitor motif containing 6
known_NIR_6803	chr15	99290921	99297538	+	99290921	99302295	A3SS	ENSMUST00000229392.2	known	0.83	15	3	15	3	y	1.00	11	0	11	0	n	0.75	9	3	9	3	y	0.88	23	3	23	3	y	0.84	21	4	21	4	y	1.00	3	0	3	0	n	0.65	15	8	15	8	y	0.56	5	4	5	4	n	0.73	16	6	16	6	y	0.80	24	6	24	6	y	0.74	17	6	17	6	y	0.77	27	8	27	8	y	ENSMUSG00000023010.16	Tmbim6	chr15	protein_coding	transmembrane BAX inhibitor motif containing 6
known_NIR_6804	chr15	99290921	99299461	+	99290921	99302295	A3SS	ENSMUST00000229392.2	known	1.00	1639	3	1639	3	y	1.00	1416	0	1416	0	n	1.00	1934	3	1934	3	y	1.00	2088	3	2088	3	y	1.00	2629	4	2629	4	y	1.00	1192	0	1192	0	n	1.00	2309	8	2309	8	y	1.00	1486	4	1486	4	y	1.00	1760	6	1760	6	y	1.00	2783	6	2783	6	y	1.00	1974	6	1974	6	y	1.00	2554	8	2554	8	y	ENSMUSG00000023010.16	Tmbim6	chr15	protein_coding	transmembrane BAX inhibitor motif containing 6
known_NIR_6805	chr15	99290921	99299461	+	99291611	99299461	5pMXE	ENSMUST00000162624.8	known	0.98	1639	40	1639	40	y	0.98	1416	22	1416	22	y	0.98	1934	33	1934	33	y	0.98	2088	48	2088	48	y	0.98	2629	55	2629	55	y	0.98	1192	20	1192	20	y	0.99	2309	32	2309	32	y	0.98	1486	25	1486	25	y	0.98	1760	40	1760	40	y	0.98	2783	60	2783	60	y	0.98	1974	32	1974	32	y	0.98	2554	49	2554	49	y	ENSMUSG00000023010.16	Tmbim6	chr15	protein_coding	transmembrane BAX inhibitor motif containing 6
known_NIR_6806	chr15	99290921;99291611	99291576;99299461	+	99290921	99299461	cassetteExon	ENSMUST00000023749.15	known	0.02	29.5	1639	19;40	1639	y	0.01	18.0	1416	14;22	1416	y	0.01	24.5	1934	16;33	1934	y	0.02	35.5	2088	23;48	2088	y	0.02	45.0	2629	35;55	2629	y	0.01	16.0	1192	12;20	1192	y	0.01	25.5	2309	19;32	2309	y	0.01	20.5	1486	16;25	1486	y	0.02	31.0	1760	22;40	1760	y	0.02	49.0	2783	38;60	2783	y	0.01	24.5	1974	17;32	1974	y	0.02	39.5	2554	30;49	2554	y	ENSMUSG00000023010.16	Tmbim6	chr15	protein_coding	transmembrane BAX inhibitor motif containing 6
known_NIR_6807	chr15	99290921;99297752	99297538;99299461	+	99290921	99299461	cassetteExon	ENSMUST00000023749.15	known	0.02	26.0	1639	15;37	1639	y	0.01	15.5	1416	11;20	1416	y	0.01	17.5	1934	9;26	1934	y	0.01	26.0	2088	23;29	2088	y	0.01	28.0	2629	21;35	2629	y	0.01	8.0	1192	3;13	1192	y	0.01	30.0	2309	15;45	2309	y	0.01	10.0	1486	5;15	1486	y	0.02	29.5	1760	16;43	1760	y	0.01	34.5	2783	24;45	2783	y	0.01	24.0	1974	17;31	1974	y	0.02	44.5	2554	27;62	2554	y	ENSMUSG00000023010.16	Tmbim6	chr15	protein_coding	transmembrane BAX inhibitor motif containing 6
known_NIR_6808	chr15	99290921;99297752	99297538;99299461	+	99290921;99291611	99291576;99299461	MXE	ENSMUST00000160635.8	known	0.47	26.0	29.5	15;37	19;40	y	0.46	15.5	18.0	11;20	14;22	y	0.42	17.5	24.5	9;26	16;33	y	0.42	26.0	35.5	23;29	23;48	y	0.38	28.0	45.0	21;35	35;55	y	0.33	8.0	16.0	3;13	12;20	y	0.54	30.0	25.5	15;45	19;32	y	0.33	10.0	20.5	5;15	16;25	y	0.49	29.5	31.0	16;43	22;40	y	0.41	34.5	49.0	24;45	38;60	y	0.49	24.0	24.5	17;31	17;32	y	0.53	44.5	39.5	27;62	30;49	y	ENSMUSG00000023010.16	Tmbim6	chr15	protein_coding	transmembrane BAX inhibitor motif containing 6
known_NIR_6809	chr15	99290921;99298088	99297942;99299461	+	99290921	99299461	cassetteExon	ENSMUST00000023749.15	known	0.00	0.5	1639	1;0	1639	n	0.00	0.0	1416	0;0	1416	n	0.00	0.5	1934	0;1	1934	n	0.00	3.5	2088	0;7	2088	n	0.00	1.0	2629	1;1	2629	n	0.00	0.0	1192	0;0	1192	n	0.00	0.0	2309	0;0	2309	n	0.00	0.5	1486	1;0	1486	n	0.00	1.0	1760	0;2	1760	n	0.00	2.0	2783	2;2	2783	y	0.00	1.5	1974	2;1	1974	n	0.00	1.5	2554	1;2	2554	n	ENSMUSG00000023010.16	Tmbim6	chr15	protein_coding	transmembrane BAX inhibitor motif containing 6
known_NIR_6810	chr15	99290921;99298088	99297942;99299461	+	99290921;99291611	99291576;99299461	MXE	ENSMUST00000160635.8	known	0.02	0.5	29.5	1;0	19;40	n	0.00	0.0	18.0	0;0	14;22	n	0.02	0.5	24.5	0;1	16;33	n	0.09	3.5	35.5	0;7	23;48	n	0.02	1.0	45.0	1;1	35;55	n	0.00	0.0	16.0	0;0	12;20	n	0.00	0.0	25.5	0;0	19;32	n	0.02	0.5	20.5	1;0	16;25	n	0.03	1.0	31.0	0;2	22;40	n	0.04	2.0	49.0	2;2	38;60	y	0.06	1.5	24.5	2;1	17;32	n	0.04	1.5	39.5	1;2	30;49	n	ENSMUSG00000023010.16	Tmbim6	chr15	protein_coding	transmembrane BAX inhibitor motif containing 6
known_NIR_6811	chr15	99290921;99298088	99297942;99299461	+	99290921;99297752	99297538;99299461	MXE	ENSMUST00000161250.8	known	0.02	0.5	26.0	1;0	15;37	n	0.00	0.0	15.5	0;0	11;20	n	0.03	0.5	17.5	0;1	9;26	n	0.12	3.5	26.0	0;7	23;29	n	0.03	1.0	28.0	1;1	21;35	n	0.00	0.0	8.0	0;0	3;13	n	0.00	0.0	30.0	0;0	15;45	n	0.05	0.5	10.0	1;0	5;15	n	0.03	1.0	29.5	0;2	16;43	n	0.05	2.0	34.5	2;2	24;45	y	0.06	1.5	24.0	2;1	17;31	n	0.03	1.5	44.5	1;2	27;62	n	ENSMUSG00000023010.16	Tmbim6	chr15	protein_coding	transmembrane BAX inhibitor motif containing 6
known_NIR_6812	chr15	99291264	99299461	+	99290921	99299461	A5SS	ENSMUST00000023749.15	known	0.01	24	1639	24	1639	y	0.01	9	1416	9	1416	y	0.01	20	1934	20	1934	y	0.00	8	2088	8	2088	y	0.01	14	2629	14	2629	y	0.01	17	1192	17	1192	y	0.01	23	2309	23	2309	y	0.01	12	1486	12	1486	y	0.01	16	1760	16	1760	y	0.00	12	2783	12	2783	y	0.00	8	1974	8	1974	y	0.01	37	2554	37	2554	y	ENSMUSG00000023010.16	Tmbim6	chr15	protein_coding	transmembrane BAX inhibitor motif containing 6
known_NIR_6813	chr15	99291264	99299461	+	99291611	99299461	A5SS&ES	ENSMUST00000160635.8	known	0.38	24	40	24	40	y	0.29	9	22	9	22	y	0.38	20	33	20	33	y	0.14	8	48	8	48	y	0.20	14	55	14	55	y	0.46	17	20	17	20	y	0.42	23	32	23	32	y	0.32	12	25	12	25	y	0.29	16	40	16	40	y	0.17	12	60	12	60	y	0.20	8	32	8	32	y	0.43	37	49	37	49	y	ENSMUSG00000023010.16	Tmbim6	chr15	protein_coding	transmembrane BAX inhibitor motif containing 6
known_NIR_6814	chr15	99291264	99299461	+	99297752	99299461	A5SS&ES	ENSMUST00000161250.8	known	0.39	24	37	24	37	y	0.31	9	20	9	20	y	0.43	20	26	20	26	y	0.22	8	29	8	29	y	0.29	14	35	14	35	y	0.57	17	13	17	13	y	0.34	23	45	23	45	y	0.44	12	15	12	15	y	0.27	16	43	16	43	y	0.21	12	45	12	45	y	0.21	8	31	8	31	y	0.37	37	62	37	62	y	ENSMUSG00000023010.16	Tmbim6	chr15	protein_coding	transmembrane BAX inhibitor motif containing 6
known_NIR_6815	chr15	99291264	99299461	+	99298088	99299461	A5SS&ES	ENSMUST00000161778.8	known	1.00	24	0	24	0	n	1.00	9	0	9	0	n	0.95	20	1	20	1	n	0.53	8	7	8	7	y	0.93	14	1	14	1	n	1.00	17	0	17	0	n	1.00	23	0	23	0	n	1.00	12	0	12	0	n	0.89	16	2	16	2	y	0.86	12	2	12	2	y	0.89	8	1	8	1	n	0.95	37	2	37	2	y	ENSMUSG00000023010.16	Tmbim6	chr15	protein_coding	transmembrane BAX inhibitor motif containing 6
known_NIR_6816	chr15	99291575	99299461	+	99290921	99299461	A5SS	ENSMUST00000023749.15	known	0.00	0	1639	0	1639	n	0.00	0	1416	0	1416	n	0.00	0	1934	0	1934	n	0.00	0	2088	0	2088	n	0.00	0	2629	0	2629	n	0.00	0	1192	0	1192	n	0.00	0	2309	0	2309	n	0.00	0	1486	0	1486	n	0.00	0	1760	0	1760	n	0.00	2	2783	2	2783	y	0.00	0	1974	0	1974	n	0.00	0	2554	0	2554	n	ENSMUSG00000023010.16	Tmbim6	chr15	protein_coding	transmembrane BAX inhibitor motif containing 6
known_NIR_6817	chr15	99291575	99299461	+	99291264	99299461	A5SS	ENSMUST00000159209.8	known	0.00	0	24	0	24	n	0.00	0	9	0	9	n	0.00	0	20	0	20	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.00	0	23	0	23	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.14	2	12	2	12	y	0.00	0	8	0	8	n	0.00	0	37	0	37	n	ENSMUSG00000023010.16	Tmbim6	chr15	protein_coding	transmembrane BAX inhibitor motif containing 6
known_NIR_6818	chr15	99291575	99299461	+	99291611	99299461	A5SS	ENSMUST00000162624.8	known	0.00	0	40	0	40	n	0.00	0	22	0	22	n	0.00	0	33	0	33	n	0.00	0	48	0	48	n	0.00	0	55	0	55	n	0.00	0	20	0	20	n	0.00	0	32	0	32	n	0.00	0	25	0	25	n	0.00	0	40	0	40	n	0.03	2	60	2	60	y	0.00	0	32	0	32	n	0.00	0	49	0	49	n	ENSMUSG00000023010.16	Tmbim6	chr15	protein_coding	transmembrane BAX inhibitor motif containing 6
known_NIR_6819	chr15	99291575	99299461	+	99297752	99299461	A5SS&ES	ENSMUST00000161250.8	known	0.00	0	37	0	37	n	0.00	0	20	0	20	n	0.00	0	26	0	26	n	0.00	0	29	0	29	n	0.00	0	35	0	35	n	0.00	0	13	0	13	n	0.00	0	45	0	45	n	0.00	0	15	0	15	n	0.00	0	43	0	43	n	0.04	2	45	2	45	y	0.00	0	31	0	31	n	0.00	0	62	0	62	n	ENSMUSG00000023010.16	Tmbim6	chr15	protein_coding	transmembrane BAX inhibitor motif containing 6
known_NIR_6820	chr15	99297752	99299461	+	99291611	99299461	A5SS	ENSMUST00000162624.8	known	0.48	37	40	37	40	y	0.48	20	22	20	22	y	0.44	26	33	26	33	y	0.38	29	48	29	48	y	0.39	35	55	35	55	y	0.39	13	20	13	20	y	0.58	45	32	45	32	y	0.38	15	25	15	25	y	0.52	43	40	43	40	y	0.43	45	60	45	60	y	0.49	31	32	31	32	y	0.56	62	49	62	49	y	ENSMUSG00000023010.16	Tmbim6	chr15	protein_coding	transmembrane BAX inhibitor motif containing 6
known_NIR_6821	chr15	99298088	99299461	+	99291611	99299461	A5SS	ENSMUST00000162624.8	known	0.00	0	40	0	40	n	0.00	0	22	0	22	n	0.03	1	33	1	33	n	0.13	7	48	7	48	y	0.02	1	55	1	55	n	0.00	0	20	0	20	n	0.00	0	32	0	32	n	0.00	0	25	0	25	n	0.05	2	40	2	40	y	0.03	2	60	2	60	y	0.03	1	32	1	32	n	0.04	2	49	2	49	y	ENSMUSG00000023010.16	Tmbim6	chr15	protein_coding	transmembrane BAX inhibitor motif containing 6
known_NIR_6822	chr15	99300050	99302295	+	99290921	99302295	A5SS	ENSMUST00000229392.2	known	1.00	2498	3	2498	3	y	1.00	2182	0	2182	0	n	1.00	2641	3	2641	3	y	1.00	3093	3	3093	3	y	1.00	3635	4	3635	4	y	1.00	1795	0	1795	0	n	1.00	3336	8	3336	8	y	1.00	2038	4	2038	4	y	1.00	2481	6	2481	6	y	1.00	4135	6	4135	6	y	1.00	3127	6	3127	6	y	1.00	3728	8	3728	8	y	ENSMUSG00000023010.16	Tmbim6	chr15	protein_coding	transmembrane BAX inhibitor motif containing 6
known_NIR_6823	chr15	99305224	99305824	+	99305224	99306356	A3SS	ENSMUST00000023749.15	known	0.00	0	1321	0	1321	n	0.00	0	1307	0	1307	n	0.00	2	1293	2	1293	y	0.00	0	1349	0	1349	n	0.00	0	1718	0	1718	n	0.00	0	823	0	823	n	0.00	0	1726	0	1726	n	0.00	0	869	0	869	n	0.00	0	1231	0	1231	n	0.00	0	1963	0	1963	n	0.00	0	1473	0	1473	n	0.00	0	1808	0	1808	n	ENSMUSG00000023010.16	Tmbim6	chr15	protein_coding	transmembrane BAX inhibitor motif containing 6
known_NIR_6824	chr15	99616210	99617084	+	99616210	99617015	A3SS	ENSMUST00000023760.13	known	0.00	0	450	0	450	n	0.00	0	358	0	358	n	0.00	0	358	0	358	n	0.00	0	676	0	676	n	0.00	0	921	0	921	n	0.00	0	275	0	275	n	0.00	0	811	0	811	n	0.00	0	418	0	418	n	0.00	0	436	0	436	n	0.00	0	921	0	921	n	0.00	0	553	0	553	n	0.01	3	555	3	555	y	ENSMUSG00000023019.13	Gpd1	chr15	protein_coding	glycerol-3-phosphate dehydrogenase 1 (soluble)
known_NIR_6825	chr15	99618559	99619823	+	99618559	99619816	A3SS	ENSMUST00000023760.13	known	0.00	0	477	0	477	n	0.00	0	412	0	412	n	0.03	11	344	11	344	y	0.04	26	605	26	605	y	0.00	0	819	0	819	n	0.00	0	251	0	251	n	0.04	35	798	35	798	y	0.00	0	376	0	376	n	0.00	0	406	0	406	n	0.00	0	911	0	911	n	0.05	29	573	29	573	y	0.00	0	509	0	509	n	ENSMUSG00000023019.13	Gpd1	chr15	protein_coding	glycerol-3-phosphate dehydrogenase 1 (soluble)
known_NIR_6826	chr15	99623729	99625216	+	99623729	99625526	A3SS	ENSMUST00000023761.4	known	0.01	3	202	3	202	y	0.00	0	178	0	178	n	0.01	1	149	1	149	n	0.00	1	207	1	207	n	0.00	1	247	1	247	n	0.00	0	123	0	123	n	0.01	2	280	2	280	y	0.01	1	89	1	89	n	0.00	0	158	0	158	n	0.02	4	237	4	237	y	0.01	2	233	2	233	y	0.00	1	214	1	214	n	ENSMUSG00000023020.4	Cox14	chr15	protein_coding	cytochrome c oxidase assembly protein 14
known_NIR_6827	chr15	99741704	99772464	-	99741704	99773214	A5SS	ENSMUST00000073691.5	known	0.00	0	20	0	20	n	0.07	1	14	1	14	n	0.00	0	18	0	18	n	0.00	0	52	0	52	n	0.00	0	58	0	58	n	0.00	0	15	0	15	n	0.02	1	56	1	56	n	0.00	0	21	0	21	n	0.00	0	30	0	30	n	0.00	0	73	0	73	n	0.00	0	28	0	28	n	0.03	2	67	2	67	y	ENSMUSG00000023022.15	Lima1	chr15	protein_coding	LIM domain and actin binding 1
known_NIR_6828	chr15	99870864	99882798	+	99870864	99882801	A3SS	ENSMUST00000100206.4	known	0.45	10	12	10	12	y	0.71	5	2	5	2	n	0.31	19	42	19	42	y	0.40	14	21	14	21	y	0.40	19	28	19	28	y	0.35	11	20	11	20	y	0.53	16	14	16	14	y	0.40	16	24	16	24	y	0.58	15	11	15	11	y	0.41	15	22	15	22	y	0.43	15	20	15	20	y	0.29	6	15	6	15	y	ENSMUSG00000023025.17	Larp4	chr15	protein_coding	La ribonucleoprotein domain family, member 4
known_NIR_6829	chr16	10237549	10238838	+	10237549	10238120	3pMXE	ENSMUST00000129280.8	known	0.00	0	76	0	76	n	0.03	2	75	2	75	y	0.00	0	101	0	101	n	0.00	0	77	0	77	n	0.00	0	111	0	111	n	0.00	0	66	0	66	n	0.00	0	105	0	105	n	0.00	0	55	0	55	n	0.00	0	86	0	86	n	0.02	2	112	2	112	y	0.03	2	65	2	65	y	0.00	0	85	0	85	n	ENSMUSG00000022503.11	Nubp1	chr16	protein_coding	nucleotide binding protein 1
known_NIR_6830	chr16	10237549	10238838	+	10237549;10238210	10238120;10238838	ES	ENSMUST00000023146.5	known	0.00	0	85.5	0	76;95	n	0.03	2	74.5	2	75;74	y	0.00	0	116.0	0	101;131	n	0.00	0	77.5	0	77;78	n	0.00	0	109.0	0	111;107	n	0.00	0	64.5	0	66;63	n	0.00	0	102.0	0	105;99	n	0.00	0	61.5	0	55;68	n	0.00	0	82.0	0	86;78	n	0.02	2	107.0	2	112;102	y	0.03	2	69.0	2	65;73	y	0.00	0	85.0	0	85;85	n	ENSMUSG00000022503.11	Nubp1	chr16	protein_coding	nucleotide binding protein 1
known_NIR_6831	chr16	10348676	10360136	-	10348676	10349464	5pMXE	ENSMUST00000183355.8	known	0.90	76	8	76	8	y	0.86	83	13	83	13	y	0.93	56	4	56	4	y	0.93	67	5	67	5	y	0.92	73	6	73	6	y	0.94	32	2	32	2	y	0.91	85	8	85	8	y	1.00	50	0	50	0	n	0.84	63	12	63	12	y	0.87	86	13	86	13	y	0.95	75	4	75	4	y	0.93	69	5	69	5	y	ENSMUSG00000038055.13	Dexi	chr16	protein_coding	dexamethasone-induced transcript
known_NIR_6832	chr16	10413897	10428867	+	10413849	10428867	A5SS	ENSMUST00000115824.10	known	0.32	7	15	7	15	y	0.29	2	5	2	5	n	0.35	19	36	19	36	y	0.49	23	24	23	24	y	0.33	15	30	15	30	y	0.29	10	25	10	25	y	0.33	12	24	12	24	y	0.29	5	12	5	12	y	0.48	15	16	15	16	y	0.33	14	29	14	29	y	0.37	11	19	11	19	y	0.45	15	18	15	18	y	ENSMUSG00000068663.15	Clec16a	chr16	protein_coding	C-type lectin domain family 16, member A
known_NIR_6833	chr16	10448665	10449358	+	10448665	10453110	A3SS	ENSMUST00000115824.10	known	0.20	2	8	2	8	y	0.18	2	9	2	9	y	0.20	4	16	4	16	y	0.42	8	11	8	11	y	0.18	2	9	2	9	y	0.44	7	9	7	9	y	0.54	7	6	7	6	y	0.22	2	7	2	7	n	0.44	4	5	4	5	n	0.38	3	5	3	5	n	0.17	2	10	2	10	y	0.41	7	10	7	10	y	ENSMUSG00000068663.15	Clec16a	chr16	protein_coding	C-type lectin domain family 16, member A
known_NIR_6834	chr16	10456779	10459104	+	10456779	10462625	A3SS	ENSMUST00000115824.10	known	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	19	0	19	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.12	2	14	2	14	y	0.00	0	10	0	10	n	0.00	0	10	0	10	n	ENSMUSG00000068663.15	Clec16a	chr16	protein_coding	C-type lectin domain family 16, member A
known_NIR_6835	chr16	10549683;10556379	10556256;10559478	+	10549683	10559478	cassetteExon	ENSMUST00000115824.10	known	0.12	1.0	7	2;0	7	n	0.00	0.0	5	0;0	5	n	0.17	2.5	12	2;3	12	y	0.08	1.0	11	0;2	11	n	0.05	0.5	9	1;0	9	n	0.00	0.0	10	0;0	10	n	0.06	0.5	8	1;0	8	n	0.00	0.0	6	0;0	6	n	0.00	0.0	8	0;0	8	n	0.00	0.0	9	0;0	9	n	0.13	2.0	13	1;3	13	n	0.00	0.0	14	0;0	14	n	ENSMUSG00000068663.15	Clec16a	chr16	protein_coding	C-type lectin domain family 16, member A
known_NIR_6836	chr16	10784513	10793291	-	10784513	10810910	A5SS	ENSMUST00000023143.14	known	0.01	1	98	1	98	n	0.01	1	103	1	103	n	0.01	2	263	2	263	y	0.00	0	153	0	153	n	0.01	2	172	2	172	y	0.00	0	97	0	97	n	0.00	0	176	0	176	n	0.02	2	118	2	118	y	0.00	0	61	0	61	n	0.00	0	133	0	133	n	0.00	0	64	0	64	n	0.02	2	106	2	106	y	ENSMUSG00000022500.16	Litaf	chr16	protein_coding	LPS-induced TN factor
known_NIR_6837	chr16	10909650	10922430	-	10909650	10911680	A5SS&ES	ENSMUST00000131012.2	known	0.12	8	60	8	60	y	0.15	8	44	8	44	y	0.08	9	106	9	106	y	0.06	3	51	3	51	y	0.17	16	76	16	76	y	0.04	3	65	3	65	y	0.14	8	49	8	49	y	0.11	8	64	8	64	y	0.19	10	44	10	44	y	0.16	8	42	8	42	y	0.11	5	41	5	41	y	0.27	14	38	14	38	y	ENSMUSG00000022498.17	Txndc11	chr16	protein_coding	thioredoxin domain containing 11
known_NIR_6838	chr16	10909650	10922430	-	10909650;10911792	10911680;10922430	ES	ENSMUST00000038424.14	known	0.13	8	52.5	8	60;45	y	0.17	8	39.0	8	44;34	y	0.08	9	101.0	9	106;96	y	0.05	3	54.5	3	51;58	y	0.16	16	85.0	16	76;94	y	0.05	3	62.5	3	65;60	y	0.13	8	53.0	8	49;57	y	0.11	8	63.5	8	64;63	y	0.18	10	46.0	10	44;48	y	0.15	8	47.0	8	42;52	y	0.13	5	32.5	5	41;24	y	0.27	14	38.0	14	38;38	y	ENSMUSG00000022498.17	Txndc11	chr16	protein_coding	thioredoxin domain containing 11
known_NIR_6839	chr16	10924135	10934659	-	10922523	10934659	A3SS	ENSMUST00000038424.14	known	0.20	14	56	14	56	y	0.36	26	47	26	47	y	0.29	57	142	57	142	y	0.19	23	95	23	95	y	0.23	28	96	28	96	y	0.18	17	75	17	75	y	0.18	15	70	15	70	y	0.19	22	95	22	95	y	0.28	19	50	19	50	y	0.21	19	71	19	71	y	0.40	29	43	29	43	y	0.19	16	68	16	68	y	ENSMUSG00000022498.17	Txndc11	chr16	protein_coding	thioredoxin domain containing 11
known_NIR_6840	chr16	10940631	10952132	-	10940631;10946567	10946351;10952132	ES	ENSMUST00000038424.14	known	0.02	1	62.5	1	66;59	n	0.00	0	47.0	0	57;37	n	0.01	2	155.5	2	178;133	y	0.03	3	91.5	3	101;82	y	0.00	0	120.5	0	132;109	n	0.02	2	102.0	2	110;94	y	0.00	0	68.0	0	77;59	n	0.00	0	85.5	0	92;79	n	0.00	0	46.5	0	51;42	n	0.00	0	72.5	0	86;59	n	0.00	0	45.0	0	49;41	n	0.01	1	72.0	1	76;68	n	ENSMUSG00000022498.17	Txndc11	chr16	protein_coding	thioredoxin domain containing 11
known_NIR_6841	chr16	10959635	10963106	-	10959635	10963044	A5SS	ENSMUST00000037633.16	known	0.23	15	49	15	49	y	0.30	18	43	18	43	y	0.22	25	91	25	91	y	0.24	16	50	16	50	y	0.19	20	87	20	87	y	0.23	15	50	15	50	y	0.16	16	86	16	86	y	0.20	11	43	11	43	y	0.31	22	49	22	49	y	0.27	17	46	17	46	y	0.31	19	43	19	43	y	0.30	21	48	21	48	y	ENSMUSG00000037965.16	Zc3h7a	chr16	protein_coding	zinc finger CCCH type containing 7 A
known_NIR_6842	chr16	10982557	10991949	-	10982557	10994084	A5SS	ENSMUST00000037633.16	known	0.00	0	35	0	35	n	0.03	1	31	1	31	n	0.00	0	96	0	96	n	0.00	0	46	0	46	n	0.04	3	71	3	71	y	0.00	0	29	0	29	n	0.03	1	29	1	29	n	0.00	0	53	0	53	n	0.00	0	23	0	23	n	0.00	0	30	0	30	n	0.00	0	24	0	24	n	0.00	0	46	0	46	n	ENSMUSG00000037965.16	Zc3h7a	chr16	protein_coding	zinc finger CCCH type containing 7 A
known_NIR_6843	chr16	10982557	10993801	-	10982557	10994084	A5SS	ENSMUST00000037633.16	known	0.00	0	35	0	35	n	0.00	0	31	0	31	n	0.00	0	96	0	96	n	0.04	2	46	2	46	y	0.00	0	71	0	71	n	0.00	0	29	0	29	n	0.06	2	29	2	29	y	0.04	2	53	2	53	y	0.00	0	23	0	23	n	0.00	0	30	0	30	n	0.00	0	24	0	24	n	0.02	1	46	1	46	n	ENSMUSG00000037965.16	Zc3h7a	chr16	protein_coding	zinc finger CCCH type containing 7 A
known_NIR_6844	chr16	11056963	11058530	-	11056960	11058530	A3SS	ENSMUST00000167571.8	known	0.61	75	48	75	48	y	0.59	53	37	53	37	y	0.68	135	63	135	63	y	0.59	105	73	105	73	y	0.61	115	74	115	74	y	0.63	52	31	52	31	y	0.57	82	63	82	63	y	0.58	61	44	61	44	y	0.57	50	38	50	38	y	0.56	80	62	80	62	y	0.57	68	52	68	52	y	0.57	97	73	97	73	y	ENSMUSG00000062203.16	Gspt1	chr16	protein_coding	G1 to S phase transition 1
known_NIR_6845	chr16	11224760	11231090	+	11221696	11231090	A5SS	ENSMUST00000180792.8	known	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.17	1	5	1	5	n	0.12	1	7	1	7	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.36	4	7	4	7	y	0.08	1	11	1	11	n	0.33	3	6	3	6	n	0.25	1	3	1	3	n	ENSMUSG00000071669.15	Snx29	chr16	protein_coding	sorting nexin 29
known_NIR_6846	chr16	11236762	11238565	+	11236762	11238568	A3SS	ENSMUST00000180792.8	known	1.00	2	0	2	0	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.42	5	7	5	7	y	1.00	8	0	8	0	n	0.80	4	1	4	1	n	1.00	2	0	2	0	n	1.00	3	0	3	0	n	1.00	3	0	3	0	n	1.00	10	0	10	0	n	1.00	5	0	5	0	n	0.00	0	2	0	2	n	ENSMUSG00000071669.15	Snx29	chr16	protein_coding	sorting nexin 29
known_NIR_6847	chr16	11703609	11705442	-	11646461	11705442	A3SS	ENSMUST00000096272.11	known	0.03	3	100	3	100	y	0.04	2	52	2	52	y	0.05	3	60	3	60	y	0.08	11	128	11	128	y	0.03	4	141	4	141	y	0.00	0	39	0	39	n	0.05	7	125	7	125	y	0.03	2	58	2	58	y	0.07	6	85	6	85	y	0.03	4	153	4	153	y	0.06	5	78	5	78	y	0.02	2	126	2	126	y	ENSMUSG00000065979.13	Cpped1	chr16	protein_coding	calcineurin-like phosphoesterase domain containing 1
known_NIR_6848	chr16	11705660;11712818	11712747;11727130	-	11705660	11727130	cassetteExon	ENSMUST00000096272.11	known	0.06	4.5	73	3;6	73	y	0.04	2.0	51	1;3	51	n	0.04	1.5	40	1;2	40	n	0.09	8.0	77	9;7	77	y	0.07	7.0	90	10;4	90	y	0.05	1.5	28	2;1	28	n	0.03	2.5	79	3;2	79	y	0.00	0.0	47	0;0	47	n	0.14	9.0	57	9;9	57	y	0.04	3.5	87	2;5	87	y	0.07	4.5	59	5;4	59	y	0.16	12.5	68	12;13	68	y	ENSMUSG00000065979.13	Cpped1	chr16	protein_coding	calcineurin-like phosphoesterase domain containing 1
known_NIR_6849	chr16	13469700;13470347	13470257;13470509	-	13469700	13470509	cassetteExon	ENSMUST00000058884.10	known	0.07	1.5	21	3;0	21	n	0.05	1.0	20	2;0	20	n	0.07	2.5	31	3;2	31	y	0.01	0.5	35	0;1	35	n	0.00	0.0	40	0;0	40	n	0.00	0.0	29	0;0	29	n	0.02	0.5	29	1;0	29	n	0.00	0.0	36	0;0	36	n	0.00	0.0	28	0;0	28	n	0.03	1.5	42	3;0	42	n	0.10	2.5	23	2;3	23	y	0.05	2.0	40	3;1	40	n	ENSMUSG00000022685.10	Parn	chr16	protein_coding	poly(A)-specific ribonuclease (deadenylation nuclease)
known_NIR_6850	chr16	13489942	13494698	+	13489942	13502926	A3SS	ENSMUST00000023365.13	known	0.01	1	95	1	95	n	0.04	3	66	3	66	y	0.06	10	167	10	167	y	0.06	7	119	7	119	y	0.02	3	194	3	194	y	0.04	4	89	4	89	y	0.04	6	139	6	139	y	0.02	3	118	3	118	y	0.00	0	84	0	84	n	0.04	7	149	7	149	y	0.00	0	88	0	88	n	0.05	7	129	7	129	y	ENSMUSG00000022684.16	Bfar	chr16	protein_coding	bifunctional apoptosis regulator
known_NIR_6851	chr16	13637300	13644924	+	13637300	13644747	3pMXE	ENSMUST00000230788.2	known	0.58	21	15	21	15	y	0.57	23	17	23	17	y	0.49	17	18	17	18	y	0.68	21	10	21	10	y	0.50	23	23	23	23	y	0.32	8	17	8	17	y	0.69	25	11	25	11	y	0.33	6	12	6	12	y	0.56	28	22	28	22	y	0.67	28	14	28	14	y	0.52	24	22	24	22	y	0.67	32	16	32	16	y	ENSMUSG00000022681.16	Ntan1	chr16	protein_coding	N-terminal Asn amidase
known_NIR_6852	chr16	13637300	13644924	+	13637300;13644849	13644747;13644924	ES	ENSMUST00000023362.15	known	0.53	21	18.5	21	15;22	y	0.57	23	17.5	23	17;18	y	0.40	17	25.5	17	18;33	y	0.63	21	12.5	21	10;15	y	0.54	23	19.5	23	23;16	y	0.28	8	21.0	8	17;25	y	0.68	25	12.0	25	11;13	y	0.35	6	11.0	6	12;10	y	0.58	28	20.5	28	22;19	y	0.66	28	14.5	28	14;15	y	0.54	24	20.5	24	22;19	y	0.53	32	28.0	32	16;40	y	ENSMUSG00000022681.16	Ntan1	chr16	protein_coding	N-terminal Asn amidase
known_NIR_6853	chr16	13637300	13645252	+	13637300	13644747	3pMXE	ENSMUST00000230788.2	known	0.12	2	15	2	15	y	0.19	4	17	4	17	y	0.10	2	18	2	18	y	0.00	0	10	0	10	n	0.15	4	23	4	23	y	0.06	1	17	1	17	n	0.27	4	11	4	11	y	0.00	0	12	0	12	n	0.08	2	22	2	22	y	0.12	2	14	2	14	y	0.04	1	22	1	22	n	0.00	0	16	0	16	n	ENSMUSG00000022681.16	Ntan1	chr16	protein_coding	N-terminal Asn amidase
known_NIR_6854	chr16	13637300;13644989	13644747;13645252	+	13637300	13645252	cassetteExon	ENSMUST00000145248.8	known	0.94	30.0	2	15;45	2	y	0.88	28.0	4	17;39	4	y	0.95	36.5	2	18;55	2	y	1.00	23.0	0	10;36	0	n	0.90	34.5	4	23;46	4	y	0.97	28.0	1	17;39	1	n	0.88	28.0	4	11;45	4	y	1.00	21.5	0	12;31	0	n	0.95	35.5	2	22;49	2	y	0.94	34.0	2	14;54	2	y	0.98	40.0	1	22;58	1	n	1.00	49.0	0	16;82	0	n	ENSMUSG00000022681.16	Ntan1	chr16	protein_coding	N-terminal Asn amidase
known_NIR_6855	chr16	13637300;13644989	13644924;13645252	+	13637300	13645252	cassetteExon	ENSMUST00000145248.8	known	0.94	33.0	2	21;45	2	y	0.89	31.0	4	23;39	4	y	0.95	36.0	2	17;55	2	y	1.00	28.5	0	21;36	0	n	0.90	34.5	4	23;46	4	y	0.96	23.5	1	8;39	1	n	0.90	35.0	4	25;45	4	y	1.00	18.5	0	6;31	0	n	0.95	38.5	2	28;49	2	y	0.95	41.0	2	28;54	2	y	0.98	41.0	1	24;58	1	n	1.00	57.0	0	32;82	0	n	ENSMUSG00000022681.16	Ntan1	chr16	protein_coding	N-terminal Asn amidase
known_NIR_6856	chr16	13650298	13652999	+	13650298;13652658	13652545;13652999	ES	ENSMUST00000023362.15	known	0.00	0	42.0	0	35;49	n	0.02	1	60.5	1	57;64	n	0.09	4	39.5	4	39;40	y	0.07	3	40.5	3	52;29	y	0.00	0	69.5	0	71;68	n	0.00	0	30.0	0	30;30	n	0.03	2	72.0	2	69;75	y	0.00	0	24.5	0	29;20	n	0.00	0	45.5	0	46;45	n	0.05	4	72.0	4	77;67	y	0.02	1	52.5	1	47;58	n	0.06	4	59.5	4	63;56	y	ENSMUSG00000022681.16	Ntan1	chr16	protein_coding	N-terminal Asn amidase
known_NIR_6857	chr16	13650298	13652999	+	13652658	13652999	5pMXE	ENSMUST00000139161.2	known	0.00	0	49	0	49	n	0.02	1	64	1	64	n	0.09	4	40	4	40	y	0.09	3	29	3	29	y	0.00	0	68	0	68	n	0.00	0	30	0	30	n	0.03	2	75	2	75	y	0.00	0	20	0	20	n	0.00	0	45	0	45	n	0.06	4	67	4	67	y	0.02	1	58	1	58	n	0.07	4	56	4	56	y	ENSMUSG00000022681.16	Ntan1	chr16	protein_coding	N-terminal Asn amidase
known_NIR_6858	chr16	13652652	13654250	-	13652710	13654250	A3SS	ENSMUST00000023361.12	known	0.02	3	120	3	120	y	0.08	13	152	13	152	y	0.05	8	149	8	149	y	0.06	8	119	8	119	y	0.09	15	155	15	155	y	0.07	6	81	6	81	y	0.03	5	157	5	157	y	0.04	3	73	3	73	y	0.07	8	114	8	114	y	0.04	7	164	7	164	y	0.08	12	144	12	144	y	0.06	9	154	9	154	y	ENSMUSG00000022680.15	Pdxdc1	chr16	protein_coding	pyridoxal-dependent decarboxylase domain containing 1
known_NIR_6859	chr16	13652710	13654907	-	13652710;13654479	13654250;13654907	ES	ENSMUST00000023361.12	known	0.13	19	124.5	19	120;129	y	0.19	35	145.5	35	152;139	y	0.15	22	126.0	22	149;103	y	0.18	26	118.5	26	119;118	y	0.16	34	180.0	34	155;205	y	0.11	11	86.5	11	81;92	y	0.20	39	159.0	39	157;161	y	0.16	17	92.5	17	73;112	y	0.19	26	114.0	26	114;114	y	0.20	43	173.5	43	164;183	y	0.14	22	135.5	22	144;127	y	0.16	30	153.5	30	154;153	y	ENSMUSG00000022680.15	Pdxdc1	chr16	protein_coding	pyridoxal-dependent decarboxylase domain containing 1
known_NIR_6860	chr16	13652710	13654907	-	13654479	13654907	A3SS&ES	ENSMUST00000152450.2	known	0.13	19	129	19	129	y	0.20	35	139	35	139	y	0.18	22	103	22	103	y	0.18	26	118	26	118	y	0.14	34	205	34	205	y	0.11	11	92	11	92	y	0.20	39	161	39	161	y	0.13	17	112	17	112	y	0.19	26	114	26	114	y	0.19	43	183	43	183	y	0.15	22	127	22	127	y	0.16	30	153	30	153	y	ENSMUSG00000022680.15	Pdxdc1	chr16	protein_coding	pyridoxal-dependent decarboxylase domain containing 1
known_NIR_6861	chr16	13758575	13762530	+	13721144	13762530	A5SS	ENSMUST00000128757.8	known	0.40	2	3	2	3	n	0.30	3	7	3	7	y	0.00	0	15	0	15	n	0.18	2	9	2	9	y	0.29	6	15	6	15	y	0.00	0	11	0	11	n	0.08	1	11	1	11	n	0.00	0	14	0	14	n	0.11	2	16	2	16	y	0.17	3	15	3	15	y	0.62	8	5	8	5	y	0.00	0	13	0	13	n	ENSMUSG00000022679.14	Mpv17l	chr16	protein_coding	Mpv17 transgene, kidney disease mutant-like
known_NIR_6862	chr16	13758575	13762530	+	13760037	13762530	A5SS&ES	ENSMUST00000148966.2	known	0.22	2	7	2	7	n	0.38	3	5	3	5	n	-	-	-	-	-	-	0.14	2	12	2	12	y	0.60	6	4	6	4	y	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.25	2	6	2	6	n	0.25	3	9	3	9	y	0.35	8	15	8	15	y	0.00	0	8	0	8	n	ENSMUSG00000022679.14	Mpv17l	chr16	protein_coding	Mpv17 transgene, kidney disease mutant-like
known_NIR_6863	chr16	13758575;13760037	13759984;13762530	+	13758575	13762530	cassetteExon	ENSMUST00000141971.8	known	0.64	3.5	2	0;7	2	n	0.50	3.0	3	1;5	3	n	-	-	-	-	-	-	0.75	6.0	2	0;12	2	n	0.25	2.0	6	0;4	6	n	-	-	-	-	-	-	0.60	1.5	1	0;3	1	n	1.00	1.5	0	0;3	0	n	0.60	3.0	2	0;6	2	n	0.65	5.5	3	2;9	3	y	0.48	7.5	8	0;15	8	n	1.00	4.5	0	1;8	0	n	ENSMUSG00000022679.14	Mpv17l	chr16	protein_coding	Mpv17 transgene, kidney disease mutant-like
known_NIR_6864	chr16	13758887	13762530	+	13721144	13762530	A5SS	ENSMUST00000128757.8	known	0.92	33	3	33	3	y	0.67	14	7	14	7	y	0.25	5	15	5	15	y	0.82	40	9	40	9	y	0.68	32	15	32	15	y	0.35	6	11	6	11	y	0.70	26	11	26	11	y	0.39	9	14	9	14	y	0.64	28	16	28	16	y	0.59	22	15	22	15	y	0.85	28	5	28	5	y	0.70	30	13	30	13	y	ENSMUSG00000022679.14	Mpv17l	chr16	protein_coding	Mpv17 transgene, kidney disease mutant-like
known_NIR_6865	chr16	13758887	13762530	+	13758575	13762530	A5SS	ENSMUST00000141971.8	known	0.94	33	2	33	2	y	0.82	14	3	14	3	y	1.00	5	0	5	0	n	0.95	40	2	40	2	y	0.84	32	6	32	6	y	1.00	6	0	6	0	n	0.96	26	1	26	1	n	1.00	9	0	9	0	n	0.93	28	2	28	2	y	0.88	22	3	22	3	y	0.78	28	8	28	8	y	1.00	30	0	30	0	n	ENSMUSG00000022679.14	Mpv17l	chr16	protein_coding	Mpv17 transgene, kidney disease mutant-like
known_NIR_6866	chr16	13758887	13762530	+	13760037	13762530	A5SS&ES	ENSMUST00000124947.8	known	0.82	33	7	33	7	y	0.74	14	5	14	5	y	1.00	5	0	5	0	n	0.77	40	12	40	12	y	0.89	32	4	32	4	y	1.00	6	0	6	0	n	0.90	26	3	26	3	y	0.75	9	3	9	3	y	0.82	28	6	28	6	y	0.71	22	9	22	9	y	0.65	28	15	28	15	y	0.79	30	8	30	8	y	ENSMUSG00000022679.14	Mpv17l	chr16	protein_coding	Mpv17 transgene, kidney disease mutant-like
known_NIR_6867	chr16	13758887;13760037	13759984;13762530	+	13758887	13762530	cassetteExon	ENSMUST00000023360.14	known	0.12	4.5	33	2;7	33	y	0.20	3.5	14	2;5	14	y	0.00	0.0	5	0;0	5	n	0.19	9.5	40	7;12	40	y	0.11	4.0	32	4;4	32	y	0.00	0.0	6	0;0	6	n	0.07	2.0	26	1;3	26	n	0.22	2.5	9	2;3	9	y	0.19	6.5	28	7;6	28	y	0.21	6.0	22	3;9	22	y	0.30	12.0	28	9;15	28	y	0.18	6.5	30	5;8	30	y	ENSMUSG00000022679.14	Mpv17l	chr16	protein_coding	Mpv17 transgene, kidney disease mutant-like
known_NIR_6868	chr16	13760037	13762530	+	13721144	13762530	A5SS	ENSMUST00000128757.8	known	0.70	7	3	7	3	y	0.42	5	7	5	7	y	0.00	0	15	0	15	n	0.57	12	9	12	9	y	0.21	4	15	4	15	y	0.00	0	11	0	11	n	0.21	3	11	3	11	y	0.18	3	14	3	14	y	0.27	6	16	6	16	y	0.38	9	15	9	15	y	0.75	15	5	15	5	y	0.38	8	13	8	13	y	ENSMUSG00000022679.14	Mpv17l	chr16	protein_coding	Mpv17 transgene, kidney disease mutant-like
known_NIR_6869	chr16	13762600	13764393	+	13762600	13764422	A3SS	ENSMUST00000128757.8	known	0.02	1	60	1	60	n	0.04	1	25	1	25	n	0.06	1	15	1	15	n	0.07	5	64	5	64	y	0.11	7	58	7	58	y	0.05	1	20	1	20	n	0.00	0	44	0	44	n	0.05	1	21	1	21	n	0.01	1	69	1	69	n	0.01	1	77	1	77	n	0.06	4	60	4	60	y	0.10	7	64	7	64	y	ENSMUSG00000022679.14	Mpv17l	chr16	protein_coding	Mpv17 transgene, kidney disease mutant-like
known_NIR_6870	chr16	13969180	13970427	-	13969180	13969890	A5SS	ENSMUST00000090300.6	known	0.00	0	20	0	20	n	0.12	2	14	2	14	y	0.07	2	25	2	25	y	0.03	1	33	1	33	n	0.13	7	45	7	45	y	0.08	1	11	1	11	n	0.08	3	36	3	36	y	0.04	1	27	1	27	n	0.03	1	28	1	28	n	0.05	2	41	2	41	y	0.18	5	23	5	23	y	0.07	4	50	4	50	y	ENSMUSG00000060657.9	Marf1	chr16	protein_coding	meiosis regulator and mRNA stability 1
known_NIR_6871	chr16	13988355	14001340	+	13988355;13993303	13993155;14001340	ES	ENSMUST00000023359.13	known	0.05	2	34.5	2	40;29	y	0.08	4	43.5	4	40;47	y	0.04	2	50.5	2	49;52	y	0.05	3	58.0	3	54;62	y	0.01	1	67.5	1	68;67	n	0.03	1	37.0	1	36;38	n	0.01	1	67.5	1	64;71	n	0.00	0	45.0	0	43;47	n	0.00	0	41.0	0	42;40	n	0.04	3	68.0	3	68;68	y	0.00	0	41.5	0	48;35	n	0.02	1	51.0	1	50;52	n	ENSMUSG00000022678.17	Nde1	chr16	protein_coding	nudE neurodevelopment protein 1
known_NIR_6872	chr16	13988355	14001340	+	13993303	14001340	5pMXE	ENSMUST00000156041.2	known	0.06	2	29	2	29	y	0.08	4	47	4	47	y	0.04	2	52	2	52	y	0.05	3	62	3	62	y	0.01	1	67	1	67	n	0.03	1	38	1	38	n	0.01	1	71	1	71	n	0.00	0	47	0	47	n	0.00	0	40	0	40	n	0.04	3	68	3	68	y	0.00	0	35	0	35	n	0.02	1	52	1	52	n	ENSMUSG00000022678.17	Nde1	chr16	protein_coding	nudE neurodevelopment protein 1
known_NIR_6873	chr16	14008096	14009454	+	14008096	14009582	A3SS	ENSMUST00000023359.13	known	0.00	0	32	0	32	n	0.23	6	20	6	20	y	0.15	4	23	4	23	y	0.00	0	32	0	32	n	0.17	7	35	7	35	y	0.13	3	20	3	20	y	0.10	3	27	3	27	y	0.12	2	14	2	14	y	0.22	6	21	6	21	y	0.10	4	38	4	38	y	0.11	3	24	3	24	y	0.12	3	23	3	23	y	ENSMUSG00000022678.17	Nde1	chr16	protein_coding	nudE neurodevelopment protein 1
known_NIR_6874	chr16	14008096	14009454	+	14008096	14010206	A3SS	ENSMUST00000117958.8	known	0.00	0	4	0	4	n	0.60	6	4	6	4	y	0.57	4	3	4	3	n	0.00	0	8	0	8	n	0.78	7	2	7	2	n	0.75	3	1	3	1	n	0.75	3	1	3	1	n	1.00	2	0	2	0	n	0.75	6	2	6	2	n	0.50	4	4	4	4	n	0.60	3	2	3	2	n	0.50	3	3	3	3	n	ENSMUSG00000022678.17	Nde1	chr16	protein_coding	nudE neurodevelopment protein 1
known_NIR_6875	chr16	14008096	14010206	+	14008096	14009582	A3SS	ENSMUST00000023359.13	known	0.11	4	32	4	32	y	0.17	4	20	4	20	y	0.12	3	23	3	23	y	0.20	8	32	8	32	y	0.05	2	35	2	35	y	0.05	1	20	1	20	n	0.04	1	27	1	27	n	0.00	0	14	0	14	n	0.09	2	21	2	21	y	0.10	4	38	4	38	y	0.08	2	24	2	24	y	0.12	3	23	3	23	y	ENSMUSG00000022678.17	Nde1	chr16	protein_coding	nudE neurodevelopment protein 1
known_NIR_6876	chr16	14013048;14015952	14015914;14018559	-	14013048	14018559	cassetteExon	ENSMUST00000090287.5	known	-	-	-	-	-	-	0.00	0.0	1	0;0	1	n	-	-	-	-	-	-	0.00	0.0	5	0;0	5	n	0.30	3.5	8	3;4	8	y	-	-	-	-	-	-	0.23	3.5	12	4;3	12	y	0.00	0.0	5	0;0	5	n	0.00	0.0	2	0;0	2	n	0.20	0.5	2	1;0	2	n	0.50	1.0	1	2;0	1	n	0.14	1.0	6	1;1	6	n	ENSMUSG00000018830.11	Myh11	chr16	protein_coding	myosin, heavy polypeptide 11, smooth muscle
known_NIR_6877	chr16	14122451	14128911	-	14122451	14135158	A5SS	ENSMUST00000230495.2	known	0.83	40	8	40	8	y	0.97	30	1	30	1	n	0.63	32	19	32	19	y	0.85	33	6	33	6	y	0.82	49	11	49	11	y	0.89	16	2	16	2	y	0.73	40	15	40	15	y	0.81	26	6	26	6	y	0.82	27	6	27	6	y	0.83	40	8	40	8	y	0.78	31	9	31	9	y	0.78	31	9	31	9	y	ENSMUSG00000022677.16	Cep20	chr16	protein_coding	centrosomal protein 20
known_NIR_6878	chr16	14122451	14135158	-	14131877	14135158	A3SS&ES	ENSMUST00000120707.2	known	0.21	8	30	8	30	y	0.06	1	15	1	15	n	0.44	19	24	19	24	y	0.16	6	31	6	31	y	0.28	11	28	11	28	y	0.10	2	18	2	18	y	0.36	15	27	15	27	y	0.38	6	10	6	10	y	0.32	6	13	6	13	y	0.18	8	37	8	37	y	0.31	9	20	9	20	y	0.20	9	35	9	35	y	ENSMUSG00000022677.16	Cep20	chr16	protein_coding	centrosomal protein 20
known_NIR_6879	chr16	15374407	15398923	-	15374407;15395004	15394879;15398923	ES	ENSMUST00000229859.2	known	0.17	12	60.5	12	54;67	y	0.09	5	52.0	5	60;44	y	0.05	6	107.5	6	104;111	y	0.11	8	68.0	8	70;66	y	0.14	13	81.0	13	79;83	y	0.16	11	57.5	11	59;56	y	0.17	18	90.5	18	88;93	y	0.12	6	43.5	6	42;45	y	0.11	7	54.5	7	55;54	y	0.13	13	84.5	13	81;88	y	0.11	8	67.0	8	68;66	y	0.08	7	78.5	7	74;83	y	ENSMUSG00000022674.16	Ube2v2	chr16	protein_coding	ubiquitin-conjugating enzyme E2 variant 2
known_NIR_6880	chr16	15399071;15411622	15411555;15412324	-	15399071	15412324	cassetteExon	ENSMUST00000115777.10	known	0.02	0.5	26	1;0	26	n	0.00	0.0	27	0;0	27	n	0.04	2.0	46	2;2	46	y	0.00	0.0	39	0;0	39	n	0.00	0.0	31	0;0	31	n	0.00	0.0	12	0;0	12	n	0.00	0.0	58	0;0	58	n	0.00	0.0	18	0;0	18	n	0.06	2.0	32	2;2	32	y	0.02	1.0	40	1;1	40	n	0.00	0.0	34	0;0	34	n	0.00	0.0	33	0;0	33	n	ENSMUSG00000022674.16	Ube2v2	chr16	protein_coding	ubiquitin-conjugating enzyme E2 variant 2
known_NIR_6881	chr16	15452441	15453094	-	15452441;15453008	15452913;15453094	ES	ENSMUST00000023353.4	known	0.00	0	4.5	0	5;4	n	0.00	0	2.5	0	1;4	n	0.00	0	3.5	0	4;3	n	0.00	0	4.0	0	6;2	n	0.29	2	5.0	2	4;6	y	-	-	-	-	-	-	0.00	0	6.5	0	8;5	n	0.00	0	5.0	0	7;3	n	0.00	0	3.0	0	2;4	n	0.13	1	6.5	1	4;9	n	0.00	0	1.5	0	2;1	n	0.00	0	6.0	0	3;9	n	ENSMUSG00000022673.6	Mcm4	chr16	protein_coding	minichromosome maintenance complex component 4
known_NIR_6882	chr16	16122567	16124327	+	16122567	16124362	A3SS	ENSMUST00000159962.8	known	0.83	86	18	86	18	y	0.80	61	15	61	15	y	0.83	62	13	62	13	y	0.88	71	10	71	10	y	0.90	72	8	72	8	y	0.93	37	3	37	3	y	0.75	59	20	59	20	y	0.88	35	5	35	5	y	0.88	53	7	53	7	y	0.83	101	21	101	21	y	0.88	74	10	74	10	y	0.82	81	18	81	18	y	ENSMUSG00000022792.17	Yars2	chr16	protein_coding	tyrosyl-tRNA synthetase 2 (mitochondrial)
known_NIR_6883	chr16	16124463	16125074	+	16124482	16125074	A5SS	ENSMUST00000159962.8	known	0.11	11	89	11	89	y	0.06	5	76	5	76	y	0.07	6	79	6	79	y	0.05	5	90	5	90	y	0.00	0	71	0	71	n	0.05	2	35	2	35	y	0.06	6	96	6	96	y	0.12	5	35	5	35	y	0.09	5	52	5	52	y	0.04	5	117	5	117	y	0.05	4	70	4	70	y	0.07	6	83	6	83	y	ENSMUSG00000022792.17	Yars2	chr16	protein_coding	tyrosyl-tRNA synthetase 2 (mitochondrial)
known_NIR_6884	chr16	16134642;16136341	16136309;16137316	-	16134642	16137316	cassetteExon	ENSMUST00000023477.15	known	0.33	14.0	28	12;16	28	y	0.39	9.5	15	9;10	15	y	0.19	9.5	40	13;6	40	y	0.20	8.5	34	10;7	34	y	0.25	15.0	45	14;16	45	y	0.18	7.5	34	11;4	34	y	0.28	13.0	33	12;14	33	y	0.36	10.5	19	9;12	19	y	0.42	14.5	20	14;15	20	y	0.40	20.0	30	20;20	30	y	0.39	17.5	27	18;17	27	y	0.27	13.0	35	14;12	35	y	ENSMUSG00000022789.16	Dnm1l	chr16	protein_coding	dynamin 1-like
known_NIR_6885	chr16	16134642;16136705	16136309;16137316	-	16134642	16137316	cassetteExon	ENSMUST00000023477.15	known	0.21	7.5	28	12;3	28	y	0.30	6.5	15	9;4	15	y	0.22	11.0	40	13;9	40	y	0.15	6.0	34	10;2	34	y	0.22	12.5	45	14;11	45	y	0.17	7.0	34	11;3	34	y	0.24	10.5	33	12;9	33	y	0.25	6.5	19	9;4	19	y	0.31	9.0	20	14;4	20	y	0.30	13.0	30	20;6	30	y	0.28	10.5	27	18;3	27	y	0.23	10.5	35	14;7	35	y	ENSMUSG00000022789.16	Dnm1l	chr16	protein_coding	dynamin 1-like
known_NIR_6886	chr16	16136341	16137316	-	16136341;16136705	16136628;16137316	ES	ENSMUST00000115749.3	known	0.86	16	2.5	16	2;3	y	0.69	10	4.5	10	5;4	y	0.46	6	7.0	6	5;9	y	0.78	7	2.0	7	2;2	y	0.65	16	8.5	16	6;11	y	0.47	4	4.5	4	6;3	y	0.74	14	5.0	14	1;9	n	0.80	12	3.0	12	2;4	y	0.79	15	4.0	15	4;4	y	0.82	20	4.5	20	3;6	y	0.83	17	3.5	17	4;3	y	0.71	12	5.0	12	3;7	y	ENSMUSG00000022789.16	Dnm1l	chr16	protein_coding	dynamin 1-like
known_NIR_6887	chr16	16158931	16163862	-	16158931	16159286	A5SS&ES	ENSMUST00000230980.2	known	0.04	1	23	1	23	n	0.09	1	10	1	10	n	0.08	3	34	3	34	y	0.03	1	37	1	37	n	0.00	0	47	0	47	n	0.00	0	16	0	16	n	0.00	0	37	0	37	n	0.00	0	26	0	26	n	0.05	1	19	1	19	n	0.13	4	27	4	27	y	0.11	2	17	2	17	y	0.00	0	24	0	24	n	ENSMUSG00000022789.16	Dnm1l	chr16	protein_coding	dynamin 1-like
known_NIR_6888	chr16	16158931	16163862	-	16158931;16159332	16159286;16163862	ES	ENSMUST00000023477.15	known	0.04	1	22.0	1	23;21	n	0.07	1	13.0	1	10;16	n	0.08	3	35.5	3	34;37	y	0.03	1	37.5	1	37;38	n	0.00	0	49.5	0	47;52	n	0.00	0	17.0	0	16;18	n	0.00	0	37.0	0	37;37	n	0.00	0	30.5	0	26;35	n	0.05	1	20.0	1	19;21	n	0.12	4	28.0	4	27;29	y	0.10	2	17.5	2	17;18	y	0.00	0	29.5	0	24;35	n	ENSMUSG00000022789.16	Dnm1l	chr16	protein_coding	dynamin 1-like
known_NIR_6889	chr16	16159332	16163844	-	16159332	16163862	A5SS	ENSMUST00000023477.15	known	0.05	1	21	1	21	n	0.00	0	16	0	16	n	0.07	3	37	3	37	y	0.10	4	38	4	38	y	0.07	4	52	4	52	y	0.10	2	18	2	18	y	0.07	3	37	3	37	y	0.05	2	35	2	35	y	0.05	1	21	1	21	n	0.00	0	29	0	29	n	0.10	2	18	2	18	y	0.00	0	35	0	35	n	ENSMUSG00000022789.16	Dnm1l	chr16	protein_coding	dynamin 1-like
known_NIR_6890	chr16	16164009	16176363	-	16164009	16176628	A5SS	ENSMUST00000023477.15	known	0.06	2	33	2	33	y	0.14	2	12	2	12	y	0.07	3	40	3	40	y	0.02	1	43	1	43	n	0.02	1	49	1	49	n	0.13	5	34	5	34	y	0.00	0	23	0	23	n	0.06	2	32	2	32	y	0.00	0	21	0	21	n	0.00	0	34	0	34	n	0.03	1	28	1	28	n	0.06	2	31	2	31	y	ENSMUSG00000022789.16	Dnm1l	chr16	protein_coding	dynamin 1-like
known_NIR_6891	chr16	16688693	16695696	+	16693019	16695696	A5SS&ES	ENSMUST00000232231.2	known	0.38	6	10	6	10	y	0.00	0	2	0	2	n	0.16	3	16	3	16	y	0.26	5	14	5	14	y	0.29	4	10	4	10	y	0.17	1	5	1	5	n	0.39	11	17	11	17	y	0.25	3	9	3	9	y	0.22	4	14	4	14	y	0.22	6	21	6	21	y	0.48	13	14	13	14	y	0.18	2	9	2	9	y	ENSMUSG00000022779.17	Top3b	chr16	protein_coding	topoisomerase (DNA) III beta
known_NIR_6892	chr16	16688693;16693019	16692933;16695696	+	16688693	16695696	cassetteExon	ENSMUST00000232080.2	known	0.52	6.5	6	3;10	6	y	1.00	1.0	0	0;2	0	n	0.73	8.0	3	0;16	3	n	0.58	7.0	5	0;14	5	n	0.62	6.5	4	3;10	4	y	0.71	2.5	1	0;5	1	n	0.45	9.0	11	1;17	11	n	0.60	4.5	3	0;9	3	n	0.65	7.5	4	1;14	4	n	0.68	12.5	6	4;21	6	y	0.37	7.5	13	1;14	13	n	0.73	5.5	2	2;9	2	y	ENSMUSG00000022779.17	Top3b	chr16	protein_coding	topoisomerase (DNA) III beta
known_NIR_6893	chr16	16688693;16693019	16692936;16695696	+	16688693	16695696	cassetteExon	ENSMUST00000232080.2	known	0.56	7.5	6	5;10	6	y	1.00	1.0	0	0;2	0	n	0.74	8.5	3	1;16	3	n	0.60	7.5	5	1;14	5	n	0.60	6.0	4	2;10	4	y	0.78	3.5	1	2;5	1	n	0.49	10.5	11	4;17	11	y	0.65	5.5	3	2;9	3	y	0.67	8.0	4	2;14	4	y	0.64	10.5	6	0;21	6	n	0.38	8.0	13	2;14	13	y	0.76	6.5	2	4;9	2	y	ENSMUSG00000022779.17	Top3b	chr16	protein_coding	topoisomerase (DNA) III beta
known_NIR_6894	chr16	16688762	16695696	+	16688693	16695696	A5SS	ENSMUST00000232080.2	known	0.14	1	6	1	6	n	1.00	1	0	1	0	n	0.50	3	3	3	3	n	0.00	0	5	0	5	n	0.33	2	4	2	4	n	0.00	0	1	0	1	n	0.00	0	11	0	11	n	0.40	2	3	2	3	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.13	2	13	2	13	y	0.00	0	2	0	2	n	ENSMUSG00000022779.17	Top3b	chr16	protein_coding	topoisomerase (DNA) III beta
known_NIR_6895	chr16	16688762	16695696	+	16693019	16695696	A5SS&ES	ENSMUST00000232581.2	known	0.09	1	10	1	10	n	0.33	1	2	1	2	n	0.16	3	16	3	16	y	0.00	0	14	0	14	n	0.17	2	10	2	10	y	0.00	0	5	0	5	n	0.00	0	17	0	17	n	0.18	2	9	2	9	y	0.00	0	14	0	14	n	0.00	0	21	0	21	n	0.12	2	14	2	14	y	0.00	0	9	0	9	n	ENSMUSG00000022779.17	Top3b	chr16	protein_coding	topoisomerase (DNA) III beta
known_NIR_6896	chr16	16688919	16695696	+	16688693	16695696	A5SS	ENSMUST00000232080.2	known	0.45	5	6	5	6	y	1.00	5	0	5	0	n	0.75	9	3	9	3	y	0.58	7	5	7	5	y	0.64	7	4	7	4	y	0.88	7	1	7	1	n	0.45	9	11	9	11	y	0.75	9	3	9	3	y	0.50	4	4	4	4	n	0.57	8	6	8	6	y	0.07	1	13	1	13	n	0.78	7	2	7	2	n	ENSMUSG00000022779.17	Top3b	chr16	protein_coding	topoisomerase (DNA) III beta
known_NIR_6897	chr16	16688919	16695696	+	16688762	16695696	A5SS	ENSMUST00000231812.2	known	0.83	5	1	5	1	n	0.83	5	1	5	1	n	0.75	9	3	9	3	y	1.00	7	0	7	0	n	0.78	7	2	7	2	n	1.00	7	0	7	0	n	1.00	9	0	9	0	n	0.82	9	2	9	2	y	1.00	4	0	4	0	n	1.00	8	0	8	0	n	0.33	1	2	1	2	n	1.00	7	0	7	0	n	ENSMUSG00000022779.17	Top3b	chr16	protein_coding	topoisomerase (DNA) III beta
known_NIR_6898	chr16	16688919	16695696	+	16693019	16695696	A5SS&ES	ENSMUST00000232581.2	known	0.33	5	10	5	10	y	0.71	5	2	5	2	n	0.36	9	16	9	16	y	0.33	7	14	7	14	y	0.41	7	10	7	10	y	0.58	7	5	7	5	y	0.35	9	17	9	17	y	0.50	9	9	9	9	y	0.22	4	14	4	14	y	0.28	8	21	8	21	y	0.07	1	14	1	14	n	0.44	7	9	7	9	y	ENSMUSG00000022779.17	Top3b	chr16	protein_coding	topoisomerase (DNA) III beta
known_NIR_6899	chr16	16688919;16693019	16692933;16695696	+	16688919	16695696	cassetteExon	ENSMUST00000023465.16	known	0.50	5.0	5	0;10	5	n	0.23	1.5	5	1;2	5	n	0.51	9.5	9	3;16	9	y	0.53	8.0	7	2;14	7	y	0.44	5.5	7	1;10	7	n	0.26	2.5	7	0;5	7	n	0.54	10.5	9	4;17	9	y	0.33	4.5	9	0;9	9	n	0.67	8.0	4	2;14	4	y	0.57	10.5	8	0;21	8	n	0.89	8.0	1	2;14	1	n	0.48	6.5	7	4;9	7	y	ENSMUSG00000022779.17	Top3b	chr16	protein_coding	topoisomerase (DNA) III beta
known_NIR_6900	chr16	16688919;16693019	16692936;16695696	+	16688919	16695696	cassetteExon	ENSMUST00000023465.16	known	0.58	7.0	5	4;10	5	y	0.17	1.0	5	0;2	5	n	0.53	10.0	9	4;16	9	y	0.52	7.5	7	1;14	7	n	0.44	5.5	7	1;10	7	n	0.33	3.5	7	2;5	7	y	0.53	10.0	9	3;17	9	y	0.44	7.0	9	5;9	9	y	0.68	8.5	4	3;14	4	y	0.57	10.5	8	0;21	8	n	0.88	7.0	1	0;14	1	n	0.39	4.5	7	0;9	7	n	ENSMUSG00000022779.17	Top3b	chr16	protein_coding	topoisomerase (DNA) III beta
known_NIR_6901	chr16	16705587	16705722	+	16705587	16705696	A3SS	ENSMUST00000232581.2	known	0.08	4	48	4	48	y	0.20	12	49	12	49	y	0.07	3	40	3	40	y	0.19	7	29	7	29	y	0.06	4	68	4	68	y	0.07	2	28	2	28	y	0.10	6	52	6	52	y	0.16	6	32	6	32	y	0.00	0	25	0	25	n	0.10	5	44	5	44	y	0.11	4	32	4	32	y	0.12	6	45	6	45	y	ENSMUSG00000022779.17	Top3b	chr16	protein_coding	topoisomerase (DNA) III beta
known_NIR_6902	chr16	16844004	16853306	+	16844004	16844222	3pMXE	ENSMUST00000232281.2	known	0.00	0	104	0	104	n	0.07	4	51	4	51	y	0.04	4	97	4	97	y	0.03	4	124	4	124	y	0.02	2	126	2	126	y	0.04	4	88	4	88	y	0.03	4	135	4	135	y	0.00	0	73	0	73	n	0.00	0	95	0	95	n	0.05	7	134	7	134	y	0.01	1	96	1	96	n	0.05	6	119	6	119	y	ENSMUSG00000063358.18	Mapk1	chr16	protein_coding	mitogen-activated protein kinase 1
known_NIR_6903	chr16	16844004	16853306	+	16844004;16844353	16844222;16853306	ES	ENSMUST00000232611.2	known	0.00	0	137.5	0	104;171	n	0.04	4	89.0	4	51;127	y	0.03	4	146.5	4	97;196	y	0.02	4	164.0	4	124;204	y	0.01	2	164.0	2	126;202	y	0.04	4	96.0	4	88;104	y	0.02	4	170.5	4	135;206	y	0.00	0	111.5	0	73;150	n	0.00	0	126.5	0	95;158	n	0.04	7	187.0	7	134;240	y	0.01	1	119.5	1	96;143	n	0.03	6	175.5	6	119;232	y	ENSMUSG00000063358.18	Mapk1	chr16	protein_coding	mitogen-activated protein kinase 1
known_NIR_6904	chr16	16844004	16853306	+	16844353	16853306	5pMXE	ENSMUST00000232067.2	known	0.00	0	171	0	171	n	0.03	4	127	4	127	y	0.02	4	196	4	196	y	0.02	4	204	4	204	y	0.01	2	202	2	202	y	0.04	4	104	4	104	y	0.02	4	206	4	206	y	0.00	0	150	0	150	n	0.00	0	158	0	158	n	0.03	7	240	7	240	y	0.01	1	143	1	143	n	0.03	6	232	6	232	y	ENSMUSG00000063358.18	Mapk1	chr16	protein_coding	mitogen-activated protein kinase 1
known_NIR_6905	chr16	16856303	16861550	+	16856298	16861550	A5SS	ENSMUST00000232611.2	known	0.78	69	20	69	20	y	0.81	76	18	76	18	y	0.81	91	22	91	22	y	0.84	118	22	118	22	y	0.83	136	27	136	27	y	0.90	63	7	63	7	y	0.85	121	22	121	22	y	0.67	53	26	53	26	y	0.79	76	20	76	20	y	0.75	103	34	103	34	y	0.85	97	17	97	17	y	0.82	118	26	118	26	y	ENSMUSG00000063358.18	Mapk1	chr16	protein_coding	mitogen-activated protein kinase 1
known_NIR_6906	chr16	16910950	16913869	-	16910950;16912907	16912747;16913869	ES	ENSMUST00000023455.14	known	0.00	0	94.5	0	91;98	n	0.00	0	88.5	0	82;95	n	0.00	0	102.5	0	92;113	n	0.01	1	111.0	1	93;129	n	0.01	2	134.5	2	141;128	y	0.00	0	52.0	0	54;50	n	0.02	2	90.0	2	85;95	y	0.00	0	55.0	0	59;51	n	0.00	0	88.0	0	76;100	n	0.00	0	129.0	0	132;126	n	0.00	0	86.0	0	89;83	n	0.00	0	99.5	0	95;104	n	ENSMUSG00000022771.18	Ppil2	chr16	protein_coding	peptidylprolyl isomerase (cyclophilin)-like 2
known_NIR_6907	chr16	16910950	16913869	-	16912907	16913869	3pMXE	ENSMUST00000231287.2	known	0.00	0	98	0	98	n	0.00	0	95	0	95	n	0.00	0	113	0	113	n	0.01	1	129	1	129	n	0.02	2	128	2	128	y	0.00	0	50	0	50	n	0.02	2	95	2	95	y	0.00	0	51	0	51	n	0.00	0	100	0	100	n	0.00	0	126	0	126	n	0.00	0	83	0	83	n	0.00	0	104	0	104	n	ENSMUSG00000022771.18	Ppil2	chr16	protein_coding	peptidylprolyl isomerase (cyclophilin)-like 2
known_NIR_6908	chr16	16914658	16915220	-	16914658	16914760	5pMXE	ENSMUST00000231287.2	known	0.99	81	1	81	1	n	0.97	60	2	60	2	y	1.00	110	0	110	0	n	0.99	84	1	84	1	n	0.99	123	1	123	1	n	1.00	44	0	44	0	n	1.00	88	0	88	0	n	1.00	43	0	43	0	n	1.00	81	0	81	0	n	1.00	92	0	92	0	n	1.00	82	0	82	0	n	1.00	103	0	103	0	n	ENSMUSG00000022771.18	Ppil2	chr16	protein_coding	peptidylprolyl isomerase (cyclophilin)-like 2
known_NIR_6909	chr16	16925088	16929007	-	16925088;16927558	16927509;16929007	ES	ENSMUST00000023455.14	known	0.01	1	69.5	1	81;58	n	0.00	0	41.5	0	47;36	n	0.04	3	79.0	3	75;83	y	0.05	4	79.0	4	86;72	y	0.00	0	100.0	0	104;96	n	0.00	0	53.5	0	60;47	n	0.03	2	72.5	2	78;67	y	0.00	0	46.0	0	45;47	n	0.02	1	56.0	1	56;56	n	0.00	0	77.5	0	86;69	n	0.06	4	61.5	4	64;59	y	0.02	2	82.5	2	93;72	y	ENSMUSG00000022771.18	Ppil2	chr16	protein_coding	peptidylprolyl isomerase (cyclophilin)-like 2
known_NIR_6910	chr16	16925088	16929007	-	16927558	16929007	3pMXE	ENSMUST00000231536.2	known	0.02	1	58	1	58	n	0.00	0	36	0	36	n	0.03	3	83	3	83	y	0.05	4	72	4	72	y	0.00	0	96	0	96	n	0.00	0	47	0	47	n	0.03	2	67	2	67	y	0.00	0	47	0	47	n	0.02	1	56	1	56	n	0.00	0	69	0	69	n	0.06	4	59	4	59	y	0.03	2	72	2	72	y	ENSMUSG00000022771.18	Ppil2	chr16	protein_coding	peptidylprolyl isomerase (cyclophilin)-like 2
known_NIR_6911	chr16	16972146	16994276	-	16972146;16978040	16977854;16994276	ES	ENSMUST00000232139.2	known	0.02	5	312.5	5	319;306	y	0.01	2	276.0	2	290;262	y	0.01	3	408.0	3	391;425	y	0.01	3	357.5	3	318;397	y	0.01	5	398.5	5	400;397	y	0.01	2	228.5	2	218;239	y	0.01	3	453.0	3	462;444	y	0.00	0	219.5	0	212;227	n	0.00	1	301.5	1	311;292	n	0.01	3	385.0	3	363;407	y	0.01	3	322.5	3	316;329	y	0.01	4	372.5	4	332;413	y	ENSMUSG00000038965.18	Ube2l3	chr16	protein_coding	ubiquitin-conjugating enzyme E2L 3
known_NIR_6912	chr16	16972146	16994276	-	16978040	16994276	3pMXE	ENSMUST00000232035.2	known	0.02	5	306	5	306	y	0.01	2	262	2	262	y	0.01	3	425	3	425	y	0.01	3	397	3	397	y	0.01	5	397	5	397	y	0.01	2	239	2	239	y	0.01	3	444	3	444	y	0.00	0	227	0	227	n	0.00	1	292	1	292	n	0.01	3	407	3	407	y	0.01	3	329	3	329	y	0.01	4	413	4	413	y	ENSMUSG00000038965.18	Ube2l3	chr16	protein_coding	ubiquitin-conjugating enzyme E2L 3
known_NIR_6913	chr16	16972146;16994371	16994276;17019299	-	16972146;16978040	16977854;17019299	MXE	ENSMUST00000231643.2	known	0.34	81.5	161.0	5;158	319;3	y	0.31	64.5	146.0	2;127	290;2	y	0.36	110.5	198.5	3;218	391;6	y	0.35	86.5	161.5	3;170	318;5	y	0.37	118.0	202.0	5;231	400;4	y	0.40	72.5	109.0	2;143	218;0	n	0.37	134.0	232.5	3;265	462;3	y	0.38	64.5	106.5	0;129	212;1	n	0.33	78.0	156.0	1;155	311;1	n	0.39	118.0	184.5	3;233	363;6	y	0.36	89.0	161.5	3;175	316;7	y	0.41	116.0	167.5	4;228	332;3	y	ENSMUSG00000038965.18	Ube2l3	chr16	protein_coding	ubiquitin-conjugating enzyme E2L 3
known_NIR_6914	chr16	16978040	16991077	-	16978040	16994276	A5SS	ENSMUST00000232139.2	known	0.00	0	306	0	306	n	0.00	1	262	1	262	n	0.00	0	425	0	425	n	0.00	0	397	0	397	n	0.01	3	397	3	397	y	0.00	0	239	0	239	n	0.00	0	444	0	444	n	0.01	2	227	2	227	y	0.00	0	292	0	292	n	0.00	0	407	0	407	n	0.00	1	329	1	329	n	0.00	2	413	2	413	y	ENSMUSG00000038965.18	Ube2l3	chr16	protein_coding	ubiquitin-conjugating enzyme E2L 3
known_NIR_6915	chr16	16978040	17019299	-	16978040;16994371	16994276;17019299	ES	ENSMUST00000232139.2	known	0.01	3	232.0	3	306;158	y	0.01	2	194.5	2	262;127	y	0.02	6	321.5	6	425;218	y	0.02	5	283.5	5	397;170	y	0.01	4	314.0	4	397;231	y	0.00	0	191.0	0	239;143	n	0.01	3	354.5	3	444;265	y	0.01	1	178.0	1	227;129	n	0.00	1	223.5	1	292;155	n	0.02	6	320.0	6	407;233	y	0.03	7	252.0	7	329;175	y	0.01	3	320.5	3	413;228	y	ENSMUSG00000038965.18	Ube2l3	chr16	protein_coding	ubiquitin-conjugating enzyme E2L 3
known_NIR_6916	chr16	17136417	17140901	-	17136417	17140852	A5SS	ENSMUST00000036161.12	known	0.00	0	22	0	22	n	0.10	1	9	1	9	n	0.03	1	38	1	38	n	0.05	1	18	1	18	n	0.12	3	22	3	22	y	0.00	0	16	0	16	n	0.10	2	18	2	18	y	0.00	0	17	0	17	n	0.00	0	19	0	19	n	0.00	0	31	0	31	n	0.00	0	18	0	18	n	0.00	0	26	0	26	n	ENSMUSG00000041720.15	Pi4ka	chr16	protein_coding	phosphatidylinositol 4-kinase alpha
known_NIR_6917	chr16	17149311	17154156	+	17149311	17154029	A3SS	ENSMUST00000023450.15	known	0.49	184	194	184	194	y	0.46	104	120	104	120	y	0.45	50	60	50	60	y	0.46	266	318	266	318	y	0.52	373	349	373	349	y	0.48	82	90	82	90	y	0.52	239	222	239	222	y	0.47	157	175	157	175	y	0.48	207	224	207	224	y	0.48	268	296	268	296	y	0.48	181	199	181	199	y	0.49	331	344	331	344	y	ENSMUSG00000022766.15	Serpind1	chr16	protein_coding	serine (or cysteine) peptidase inhibitor, clade D, member 1
known_NIR_6918	chr16	17207321	17223498	-	17207321	17224119	A5SS	ENSMUST00000036161.12	known	0.86	19	3	19	3	y	1.00	15	0	15	0	n	1.00	35	0	35	0	n	1.00	15	0	15	0	n	1.00	23	0	23	0	n	0.92	12	1	12	1	n	0.94	17	1	17	1	n	1.00	20	0	20	0	n	1.00	27	0	27	0	n	0.97	33	1	33	1	n	1.00	13	0	13	0	n	0.94	31	2	31	2	y	ENSMUSG00000041720.15	Pi4ka	chr16	protein_coding	phosphatidylinositol 4-kinase alpha
known_NIR_6919	chr16	17270652	17301525	+	17270652	17286757	3pMXE	ENSMUST00000231228.2	known	0.00	0	18	0	18	n	0.00	0	11	0	11	n	0.00	0	59	0	59	n	0.03	1	29	1	29	n	0.00	0	40	0	40	n	0.00	0	21	0	21	n	0.00	0	33	0	33	n	0.07	2	26	2	26	y	0.00	0	20	0	20	n	0.07	2	28	2	28	y	0.11	2	17	2	17	y	0.00	0	26	0	26	n	ENSMUSG00000006134.5	Crkl	chr16	protein_coding	v-crk avian sarcoma virus CT10 oncogene homolog-like
known_NIR_6920	chr16	17270652	17301525	+	17270652;17287222	17286757;17301525	ES	ENSMUST00000006293.5	known	0.00	0	19.5	0	18;21	n	0.00	0	13.5	0	11;16	n	0.00	0	50.0	0	59;41	n	0.03	1	32.0	1	29;35	n	0.00	0	36.0	0	40;32	n	0.00	0	16.5	0	21;12	n	0.00	0	33.0	0	33;33	n	0.08	2	23.5	2	26;21	y	0.00	0	14.0	0	20;8	n	0.07	2	26.0	2	28;24	y	0.10	2	18.0	2	17;19	y	0.00	0	35.0	0	26;44	n	ENSMUSG00000006134.5	Crkl	chr16	protein_coding	v-crk avian sarcoma virus CT10 oncogene homolog-like
known_NIR_6921	chr16	17320821	17321508	+	17320821;17321406	17321330;17321508	ES	ENSMUST00000115685.10	known	0.06	1	16.0	1	19;13	n	0.06	1	15.5	1	14;17	n	0.00	0	1.0	0	2;0	n	0.00	0	11.0	0	7;15	n	0.11	2	16.0	2	16;16	y	0.00	0	3.5	0	3;4	n	0.05	1	19.5	1	20;19	n	0.22	1	3.5	1	3;4	n	0.00	0	14.0	0	14;14	n	0.00	0	27.5	0	23;32	n	0.00	0	13.5	0	13;14	n	0.00	0	18.0	0	15;21	n	ENSMUSG00000022763.19	Aifm3	chr16	protein_coding	apoptosis-inducing factor, mitochondrion-associated 3
known_NIR_6922	chr16	17336438	17337197	+	17336438	17337251	A3SS	ENSMUST00000023444.11	known	0.08	2	24	2	24	y	0.00	0	27	0	27	n	0.00	0	40	0	40	n	0.00	0	29	0	29	n	0.00	0	43	0	43	n	0.00	0	25	0	25	n	0.00	0	47	0	47	n	0.00	0	27	0	27	n	0.00	0	27	0	27	n	0.00	0	40	0	40	n	0.00	0	36	0	36	n	0.00	0	39	0	39	n	ENSMUSG00000022761.13	Lztr1	chr16	protein_coding	leucine-zipper-like transcriptional regulator, 1
known_NIR_6923	chr16	17342086	17343287	+	17342086	17342172	3pMXE	ENSMUST00000232379.2	known	0.07	3	37	3	37	y	0.03	2	60	2	60	y	0.04	2	55	2	55	y	0.06	4	67	4	67	y	0.00	0	84	0	84	n	0.00	0	24	0	24	n	0.03	2	73	2	73	y	0.09	3	29	3	29	y	0.04	2	50	2	50	y	0.04	3	69	3	69	y	0.06	3	51	3	51	y	0.03	2	64	2	64	y	ENSMUSG00000022761.13	Lztr1	chr16	protein_coding	leucine-zipper-like transcriptional regulator, 1
known_NIR_6924	chr16	17343208	17343287	+	17342086	17343287	A5SS	ENSMUST00000232438.2	known	0.96	79	3	79	3	y	0.96	48	2	48	2	y	0.97	76	2	76	2	y	0.95	74	4	74	4	y	1.00	73	0	73	0	n	1.00	33	0	33	0	n	0.98	87	2	87	2	y	0.95	56	3	56	3	y	0.96	48	2	48	2	y	0.97	88	3	88	3	y	0.96	71	3	71	3	y	0.98	82	2	82	2	y	ENSMUSG00000022761.13	Lztr1	chr16	protein_coding	leucine-zipper-like transcriptional regulator, 1
known_NIR_6925	chr16	17346604	17348094	-	17346604	17346799	5pMXE	ENSMUST00000231699.2	known	0.05	4	72	4	72	y	0.11	8	65	8	65	y	0.03	2	70	2	70	y	0.03	2	56	2	56	y	0.12	11	79	11	79	y	0.10	5	47	5	47	y	0.02	2	89	2	89	y	0.05	2	37	2	37	y	0.07	3	41	3	41	y	0.01	1	100	1	100	n	0.01	1	93	1	93	n	0.03	3	89	3	89	y	ENSMUSG00000022760.18	Thap7	chr16	protein_coding	THAP domain containing 7
known_NIR_6926	chr16	17346604	17348094	-	17346604;17346939	17346799;17348094	ES	ENSMUST00000100125.12	known	0.05	4	70.5	4	72;69	y	0.11	8	62.0	8	65;59	y	0.03	2	67.0	2	70;64	y	0.03	2	57.0	2	56;58	y	0.12	11	80.5	11	79;82	y	0.11	5	41.0	5	47;35	y	0.03	2	76.5	2	89;64	y	0.06	2	34.0	2	37;31	y	0.05	3	52.5	3	41;64	y	0.01	1	84.5	1	100;69	n	0.01	1	76.0	1	93;59	n	0.03	3	83.0	3	89;77	y	ENSMUSG00000022760.18	Thap7	chr16	protein_coding	THAP domain containing 7
known_NIR_6927	chr16	17346604	17348094	-	17346939	17348094	3pMXE	ENSMUST00000231446.2	known	0.05	4	69	4	69	y	0.12	8	59	8	59	y	0.03	2	64	2	64	y	0.03	2	58	2	58	y	0.12	11	82	11	82	y	0.12	5	35	5	35	y	0.03	2	64	2	64	y	0.06	2	31	2	31	y	0.04	3	64	3	64	y	0.01	1	69	1	69	n	0.02	1	59	1	59	n	0.04	3	77	3	77	y	ENSMUSG00000022760.18	Thap7	chr16	protein_coding	THAP domain containing 7
known_NIR_6928	chr16	17346604	17348642	-	17346604	17346799	A5SS&ES	ENSMUST00000232114.2	known	0.00	0	72	0	72	n	0.00	0	65	0	65	n	0.01	1	70	1	70	n	0.00	0	56	0	56	n	0.00	0	79	0	79	n	0.00	0	47	0	47	n	0.04	4	89	4	89	y	0.00	0	37	0	37	n	0.00	0	41	0	41	n	0.02	2	100	2	100	y	0.00	0	93	0	93	n	0.00	0	89	0	89	n	ENSMUSG00000022760.18	Thap7	chr16	protein_coding	THAP domain containing 7
known_NIR_6929	chr16	17346604;17348249	17348094;17348642	-	17346604	17348642	cassetteExon	ENSMUST00000232041.2	known	1.00	24.0	0	4;44	0	n	1.00	19.5	0	8;31	0	n	0.94	14.5	1	2;27	1	n	1.00	17.5	0	2;33	0	n	1.00	23.0	0	11;35	0	n	1.00	17.0	0	5;29	0	n	0.81	17.0	4	2;32	4	y	1.00	7.0	0	2;12	0	n	1.00	10.0	0	3;17	0	n	0.88	14.5	2	1;28	2	n	1.00	13.0	0	1;25	0	n	1.00	17.0	0	3;31	0	n	ENSMUSG00000022760.18	Thap7	chr16	protein_coding	THAP domain containing 7
known_NIR_6930	chr16	17348249	17348542	-	17348249	17348642	A5SS	ENSMUST00000100125.12	known	0.06	3	44	3	44	y	0.21	8	31	8	31	y	0.29	11	27	11	27	y	0.15	6	33	6	33	y	0.15	6	35	6	35	y	0.17	6	29	6	29	y	0.20	8	32	8	32	y	0.29	5	12	5	12	y	0.19	4	17	4	17	y	0.20	7	28	7	28	y	0.31	11	25	11	25	y	0.16	6	31	6	31	y	ENSMUSG00000022760.18	Thap7	chr16	protein_coding	THAP domain containing 7
known_NIR_6931	chr16	17348249	17348548	-	17348249	17348542	A5SS	ENSMUST00000232046.2	known	0.70	7	3	7	3	y	0.43	6	8	6	8	y	0.48	10	11	10	11	y	0.65	11	6	11	6	y	0.62	10	6	10	6	y	0.54	7	6	7	6	y	0.53	9	8	9	8	y	0.64	9	5	9	5	y	0.64	7	4	7	4	y	0.67	14	7	14	7	y	0.52	12	11	12	11	y	0.60	9	6	9	6	y	ENSMUSG00000022760.18	Thap7	chr16	protein_coding	THAP domain containing 7
known_NIR_6932	chr16	17348249	17348548	-	17348249	17348642	A5SS	ENSMUST00000100125.12	known	0.14	7	44	7	44	y	0.16	6	31	6	31	y	0.27	10	27	10	27	y	0.25	11	33	11	33	y	0.22	10	35	10	35	y	0.19	7	29	7	29	y	0.22	9	32	9	32	y	0.43	9	12	9	12	y	0.29	7	17	7	17	y	0.33	14	28	14	28	y	0.32	12	25	12	25	y	0.23	9	31	9	31	y	ENSMUSG00000022760.18	Thap7	chr16	protein_coding	THAP domain containing 7
known_NIR_6933	chr16	17348641	17348889	-	17348721	17348889	A3SS	ENSMUST00000232114.2	known	0.12	3	22	3	22	y	0.00	0	26	0	26	n	0.00	0	18	0	18	n	0.00	0	24	0	24	n	0.10	3	26	3	26	y	0.00	0	12	0	12	n	0.00	0	25	0	25	n	0.00	0	16	0	16	n	0.00	0	18	0	18	n	0.10	4	35	4	35	y	0.00	0	26	0	26	n	0.00	0	21	0	21	n	ENSMUSG00000022760.18	Thap7	chr16	protein_coding	THAP domain containing 7
known_NIR_6934	chr16	17348721	17348842	-	17348721	17348889	A5SS	ENSMUST00000100125.12	known	0.08	2	22	2	22	y	0.04	1	26	1	26	n	0.14	3	18	3	18	y	0.04	1	24	1	24	n	0.21	7	26	7	26	y	0.25	4	12	4	12	y	0.11	3	25	3	25	y	0.06	1	16	1	16	n	0.00	0	18	0	18	n	0.08	3	35	3	35	y	0.16	5	26	5	26	y	0.09	2	21	2	21	y	ENSMUSG00000022760.18	Thap7	chr16	protein_coding	THAP domain containing 7
known_NIR_6935	chr16	17439389	17443584	+	17439389	17441769	A3SS&ES	ENSMUST00000231311.2	known	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	30	0	30	n	0.00	0	21	0	21	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.15	2	11	2	11	y	0.00	0	24	0	24	n	0.00	0	10	0	10	n	0.00	0	19	0	19	n	ENSMUSG00000005899.15	Smpd4	chr16	protein_coding	sphingomyelin phosphodiesterase 4
known_NIR_6936	chr16	17439389	17443584	+	17439389;17441855	17441769;17443584	ES	ENSMUST00000006053.13	known	0.00	0	13.0	0	15;11	n	0.00	0	8.0	0	7;9	n	0.00	0	13.5	0	14;13	n	0.00	0	21.5	0	30;13	n	0.00	0	19.0	0	21;17	n	0.00	0	8.0	0	10;6	n	0.00	0	5.5	0	6;5	n	0.00	0	5.5	0	7;4	n	0.17	2	10.0	2	11;9	y	0.00	0	18.5	0	24;13	n	0.00	0	11.0	0	10;12	n	0.00	0	19.0	0	19;19	n	ENSMUSG00000005899.15	Smpd4	chr16	protein_coding	sphingomyelin phosphodiesterase 4
known_NIR_6937	chr16	17443726	17444294	+	17443726	17443808	3pMXE	ENSMUST00000232442.2	known	0.07	1	13	1	13	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.18	2	9	2	9	y	0.00	0	15	0	15	n	0.33	2	4	2	4	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	16	0	16	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	ENSMUSG00000005899.15	Smpd4	chr16	protein_coding	sphingomyelin phosphodiesterase 4
known_NIR_6938	chr16	17443726	17444294	+	17443726;17443883	17443808;17444294	ES	ENSMUST00000006053.13	known	0.06	1	14.5	1	13;16	n	0.00	0	7.0	0	6;8	n	0.00	0	15.5	0	11;20	n	0.13	2	13.0	2	9;17	y	0.00	0	18.0	0	15;21	n	0.25	2	6.0	2	4;8	y	0.00	0	13.0	0	10;16	n	0.00	0	5.0	0	3;7	n	0.00	0	8.0	0	5;11	n	0.00	0	16.5	0	16;17	n	0.00	0	15.0	0	14;16	n	0.00	0	13.5	0	9;18	n	ENSMUSG00000005899.15	Smpd4	chr16	protein_coding	sphingomyelin phosphodiesterase 4
known_NIR_6939	chr16	17449921	17456360	+	17449921	17453346	A3SS&ES	ENSMUST00000231722.2	known	0.60	12	8	12	8	y	0.89	8	1	8	1	n	0.78	14	4	14	4	y	0.62	8	5	8	5	y	0.58	7	5	7	5	y	0.46	6	7	6	7	y	0.43	6	8	6	8	y	0.50	4	4	4	4	n	0.55	6	5	6	5	y	0.69	9	4	9	4	y	0.50	6	6	6	6	y	0.55	12	10	12	10	y	ENSMUSG00000005899.15	Smpd4	chr16	protein_coding	sphingomyelin phosphodiesterase 4
known_NIR_6940	chr16	17449921	17456360	+	17449921;17453432	17453346;17456360	ES	ENSMUST00000006053.13	known	0.63	12	7.0	12	8;6	y	0.80	8	2.0	8	1;3	n	0.70	14	6.0	14	4;8	y	0.70	8	3.5	8	5;2	y	0.44	7	9.0	7	5;13	y	0.60	6	4.0	6	7;1	n	0.48	6	6.5	6	8;5	y	0.40	4	6.0	4	4;8	y	0.67	6	3.0	6	5;1	n	0.67	9	4.5	9	4;5	y	0.55	6	5.0	6	6;4	y	0.62	12	7.5	12	10;5	y	ENSMUSG00000005899.15	Smpd4	chr16	protein_coding	sphingomyelin phosphodiesterase 4
known_NIR_6941	chr16	17470127	17470569	-	17470127	17470573	A5SS	ENSMUST00000232645.2	known	0.02	1	62	1	62	n	0.00	0	49	0	49	n	0.00	0	87	0	87	n	0.00	0	59	0	59	n	0.00	0	82	0	82	n	0.00	0	60	0	60	n	0.01	1	83	1	83	n	0.00	0	64	0	64	n	0.05	2	41	2	41	y	0.00	0	61	0	61	n	0.00	0	52	0	52	n	0.00	0	42	0	42	n	ENSMUSG00000012114.18	Med15	chr16	protein_coding	mediator complex subunit 15
known_NIR_6942	chr16	17473669	17481241	-	17473669	17490933	A5SS	ENSMUST00000232645.2	known	0.71	17	7	17	7	y	0.86	24	4	24	4	y	0.98	49	1	49	1	n	0.90	37	4	37	4	y	0.90	28	3	28	3	y	0.98	41	1	41	1	n	0.82	28	6	28	6	y	1.00	29	0	29	0	n	0.89	24	3	24	3	y	0.92	34	3	34	3	y	0.92	24	2	24	2	y	0.93	42	3	42	3	y	ENSMUSG00000012114.18	Med15	chr16	protein_coding	mediator complex subunit 15
known_NIR_6943	chr16	17473669	17489409	-	17473669;17481360	17481241;17489409	ES	ENSMUST00000012259.9	known	0.35	9	16.5	9	17;16	y	0.21	5	19.0	5	24;14	y	0.14	7	42.0	7	49;35	y	0.22	9	32.5	9	37;28	y	0.25	11	33.0	11	28;38	y	0.07	3	39.0	3	41;37	y	0.16	5	27.0	5	28;26	y	0.17	5	24.5	5	29;20	y	0.16	4	20.5	4	24;17	y	0.16	6	32.5	6	34;31	y	0.36	12	21.5	12	24;19	y	0.17	6	29.0	6	42;16	y	ENSMUSG00000012114.18	Med15	chr16	protein_coding	mediator complex subunit 15
known_NIR_6944	chr16	17473669;17489537	17489409;17490933	-	17473669	17490933	cassetteExon	ENSMUST00000232645.2	known	0.69	15.5	7	9;22	7	y	0.78	14.0	4	5;23	4	y	0.97	39.0	1	7;71	1	n	0.87	26.5	4	9;44	4	y	0.92	34.5	3	11;58	3	y	0.94	15.5	1	3;28	1	n	0.81	25.0	6	5;45	6	y	1.00	28.5	0	5;52	0	n	0.85	17.5	3	4;31	3	y	0.90	27.0	3	6;48	3	y	0.91	21.5	2	12;31	2	y	0.87	19.5	3	6;33	3	y	ENSMUSG00000012114.18	Med15	chr16	protein_coding	mediator complex subunit 15
known_NIR_6945	chr16	17492522	17501023	-	17498625	17501023	3pMXE	ENSMUST00000232005.2	known	0.12	6	44	6	44	y	0.00	0	12	0	12	n	0.07	4	54	4	54	y	0.19	8	35	8	35	y	0.13	7	45	7	45	y	0.38	6	10	6	10	y	0.10	4	38	4	38	y	0.00	0	29	0	29	n	0.09	2	21	2	21	y	0.10	4	38	4	38	y	0.05	1	20	1	20	n	0.05	2	40	2	40	y	ENSMUSG00000012114.18	Med15	chr16	protein_coding	mediator complex subunit 15
known_NIR_6946	chr16	17492522	17503317	-	17492522;17498625	17498413;17503317	ES	ENSMUST00000232202.2	known	0.00	0	15.0	0	27;3	n	0.00	0	11.0	0	19;3	n	0.08	2	24.0	2	46;2	y	0.00	0	15.5	0	27;4	n	0.04	1	26.0	1	49;3	n	0.00	0	13.5	0	25;2	n	0.00	0	13.5	0	26;1	n	0.00	0	17.0	0	31;3	n	0.14	2	12.5	2	21;4	y	0.23	7	23.5	7	46;1	n	0.09	1	10.5	1	21;0	n	0.00	0	15.5	0	31;0	n	ENSMUSG00000012114.18	Med15	chr16	protein_coding	mediator complex subunit 15
known_NIR_6947	chr16	17492522	17503317	-	17492522;17501052	17501023;17503317	ES	ENSMUST00000232645.2	known	0.00	0	24.0	0	6;42	n	0.00	0	8.5	0	0;17	n	0.06	2	32.5	2	4;61	y	0.00	0	25.0	0	8;42	n	0.03	1	29.0	1	7;51	n	0.00	0	11.0	0	6;16	n	0.00	0	24.5	0	4;45	n	0.00	0	21.5	0	0;43	n	0.11	2	15.5	2	2;29	y	0.23	7	24.0	7	4;44	y	0.06	1	14.5	1	1;28	n	0.00	0	20.0	0	2;38	n	ENSMUSG00000012114.18	Med15	chr16	protein_coding	mediator complex subunit 15
known_NIR_6948	chr16	17492522	17503317	-	17501052	17503317	3pMXE	ENSMUST00000232667.2	known	0.00	0	42	0	42	n	0.00	0	17	0	17	n	0.03	2	61	2	61	y	0.00	0	42	0	42	n	0.02	1	51	1	51	n	0.00	0	16	0	16	n	0.00	0	45	0	45	n	0.00	0	43	0	43	n	0.06	2	29	2	29	y	0.14	7	44	7	44	y	0.03	1	28	1	28	n	0.00	0	38	0	38	n	ENSMUSG00000012114.18	Med15	chr16	protein_coding	mediator complex subunit 15
known_NIR_6949	chr16	17492522;17498625	17498413;17501023	-	17492522	17501023	cassetteExon	ENSMUST00000232645.2	known	0.86	35.5	6	27;44	6	y	1.00	15.5	0	19;12	0	n	0.93	50.0	4	46;54	4	y	0.79	31.0	8	27;35	8	y	0.87	47.0	7	49;45	7	y	0.74	17.5	6	25;10	6	y	0.89	32.0	4	26;38	4	y	1.00	30.0	0	31;29	0	n	0.91	21.0	2	21;21	2	y	0.91	42.0	4	46;38	4	y	0.95	20.5	1	21;20	1	n	0.95	35.5	2	31;40	2	y	ENSMUSG00000012114.18	Med15	chr16	protein_coding	mediator complex subunit 15
known_NIR_6950	chr16	17492522;17498625	17498413;17503317	-	17492522;17501052	17501023;17503317	MXE	ENSMUST00000232645.2	known	0.38	15.0	24.0	27;3	6;42	y	0.56	11.0	8.5	19;3	0;17	n	0.42	24.0	32.5	46;2	4;61	y	0.38	15.5	25.0	27;4	8;42	y	0.47	26.0	29.0	49;3	7;51	y	0.55	13.5	11.0	25;2	6;16	y	0.36	13.5	24.5	26;1	4;45	n	0.44	17.0	21.5	31;3	0;43	n	0.45	12.5	15.5	21;4	2;29	y	0.49	23.5	24.0	46;1	4;44	n	0.42	10.5	14.5	21;0	1;28	n	0.44	15.5	20.0	31;0	2;38	n	ENSMUSG00000012114.18	Med15	chr16	protein_coding	mediator complex subunit 15
known_NIR_6951	chr16	17498625	17503317	-	17498625;17501052	17501023;17503317	ES	ENSMUST00000012259.9	known	0.07	3	43.0	3	44;42	y	0.17	3	14.5	3	12;17	y	0.03	2	57.5	2	54;61	y	0.09	4	38.5	4	35;42	y	0.06	3	48.0	3	45;51	y	0.13	2	13.0	2	10;16	y	0.02	1	41.5	1	38;45	n	0.08	3	36.0	3	29;43	y	0.14	4	25.0	4	21;29	y	0.02	1	41.0	1	38;44	n	0.00	0	24.0	0	20;28	n	0.00	0	39.0	0	40;38	n	ENSMUSG00000012114.18	Med15	chr16	protein_coding	mediator complex subunit 15
known_NIR_6952	chr16	17498625	17503317	-	17501052	17503317	3pMXE	ENSMUST00000232667.2	known	0.07	3	42	3	42	y	0.15	3	17	3	17	y	0.03	2	61	2	61	y	0.09	4	42	4	42	y	0.06	3	51	3	51	y	0.11	2	16	2	16	y	0.02	1	45	1	45	n	0.07	3	43	3	43	y	0.12	4	29	4	29	y	0.02	1	44	1	44	n	0.00	0	28	0	28	n	0.00	0	38	0	38	n	ENSMUSG00000012114.18	Med15	chr16	protein_coding	mediator complex subunit 15
known_NIR_6953	chr16	17515558	17515941	-	17515558	17540620	A5SS	ENSMUST00000012259.9	known	0.00	0	25	0	25	n	0.11	2	17	2	17	y	0.00	0	30	0	30	n	0.00	0	31	0	31	n	0.00	0	50	0	50	n	0.00	0	28	0	28	n	0.00	0	26	0	26	n	0.00	0	40	0	40	n	0.00	0	16	0	16	n	0.00	0	33	0	33	n	0.00	0	26	0	26	n	0.00	0	25	0	25	n	ENSMUSG00000012114.18	Med15	chr16	protein_coding	mediator complex subunit 15
known_NIR_6954	chr16	17515558;17524347	17524263;17540620	-	17515558	17540620	cassetteExon	ENSMUST00000012259.9	known	0.15	4.5	25	5;4	25	y	0.17	3.5	17	2;5	17	y	0.22	8.5	30	8;9	30	y	0.05	1.5	31	1;2	31	n	0.12	7.0	50	7;7	50	y	0.10	3.0	28	4;2	28	y	0.12	3.5	26	3;4	26	y	0.00	0.0	40	0;0	40	n	0.16	3.0	16	3;3	16	y	0.15	6.0	33	8;4	33	y	0.10	3.0	26	3;3	26	y	0.14	4.0	25	3;5	25	y	ENSMUSG00000012114.18	Med15	chr16	protein_coding	mediator complex subunit 15
known_NIR_6955	chr16	17520819	17540620	-	17515558	17540620	A3SS	ENSMUST00000012259.9	known	0.00	0	25	0	25	n	0.06	1	17	1	17	n	0.03	1	30	1	30	n	0.09	3	31	3	31	y	0.00	0	50	0	50	n	0.07	2	28	2	28	y	0.10	3	26	3	26	y	0.09	4	40	4	40	y	0.06	1	16	1	16	n	0.00	0	33	0	33	n	0.07	2	26	2	26	y	0.00	0	25	0	25	n	ENSMUSG00000012114.18	Med15	chr16	protein_coding	mediator complex subunit 15
known_NIR_6956	chr16	17521013	17540620	-	17515558	17540620	A3SS	ENSMUST00000012259.9	known	0.00	0	25	0	25	n	0.00	0	17	0	17	n	0.00	0	30	0	30	n	0.00	0	31	0	31	n	0.00	0	50	0	50	n	0.00	0	28	0	28	n	0.00	0	26	0	26	n	0.00	0	40	0	40	n	0.00	0	16	0	16	n	0.03	1	33	1	33	n	0.00	0	26	0	26	n	0.11	3	25	3	25	y	ENSMUSG00000012114.18	Med15	chr16	protein_coding	mediator complex subunit 15
known_NIR_6957	chr16	17577570	17582248	+	17577558	17582248	A5SS	ENSMUST00000129199.8	known	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	13	0	13	n	0.25	2	6	2	6	n	1.00	3	0	3	0	n	0.11	1	8	1	8	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.27	3	8	3	8	y	1.00	2	0	2	0	n	ENSMUSG00000022750.19	Klhl22	chr16	protein_coding	kelch-like 22
known_NIR_6958	chr16	17676434	17677268	-	17676443	17677268	A3SS	ENSMUST00000150068.2	known	0.46	42	49	42	49	y	0.44	32	40	32	40	y	0.27	20	55	20	55	y	0.46	52	60	52	60	y	0.45	67	82	67	82	y	0.40	20	30	20	30	y	0.45	46	57	46	57	y	0.43	27	36	27	36	y	0.50	42	42	42	42	y	0.42	59	80	59	80	y	0.32	34	73	34	73	y	0.42	58	81	58	81	y	ENSMUSG00000092470.2	Gm20518	chr16	protein_coding	predicted gene 20518
known_NIR_6959	chr16	17677387	17690427	-	17677390	17690427	A3SS	ENSMUST00000150068.2	known	0.04	3	70	3	70	y	0.20	8	32	8	32	y	0.05	4	73	4	73	y	0.00	0	114	0	114	n	0.03	4	122	4	122	y	0.00	0	39	0	39	n	0.00	0	100	0	100	n	0.06	4	59	4	59	y	0.01	1	67	1	67	n	0.00	0	119	0	119	n	0.00	0	64	0	64	n	0.05	5	97	5	97	y	ENSMUSG00000092470.2	Gm20518	chr16	protein_coding	predicted gene 20518
known_NIR_6960	chr16	17725786	17727769	-	17725783	17727769	A3SS	ENSMUST00000232423.2	known	0.58	7	5	7	5	y	0.92	12	1	12	1	n	0.58	11	8	11	8	y	0.56	9	7	9	7	y	0.70	16	7	16	7	y	0.91	10	1	10	1	n	0.71	10	4	10	4	y	0.64	7	4	7	4	y	0.80	8	2	8	2	y	0.67	14	7	14	7	y	0.44	4	5	4	5	n	0.60	9	6	9	6	y	ENSMUSG00000003527.10	Ess2	chr16	protein_coding	ess-2 splicing factor
known_NIR_6961	chr16	17744604	17745110	-	17744604	17745018	A5SS	ENSMUST00000003622.16	known	0.00	2	591	2	591	y	0.00	2	539	2	539	y	0.00	0	648	0	648	n	0.00	1	633	1	633	n	0.00	3	824	3	824	y	0.00	2	434	2	434	y	0.00	3	816	3	816	y	0.00	0	457	0	457	n	0.00	0	663	0	663	n	0.01	8	1060	8	1060	y	0.01	5	829	5	829	y	0.01	5	909	5	909	y	ENSMUSG00000003528.16	Slc25a1	chr16	protein_coding	solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1
known_NIR_6962	chr16	17887388	17887946	+	17887388	17887955	A3SS	ENSMUST00000143343.8	known	0.20	45	180	45	180	y	0.22	46	162	46	162	y	0.25	35	105	35	105	y	0.18	35	160	35	160	y	0.20	48	198	48	198	y	0.11	9	74	9	74	y	0.23	61	205	61	205	y	0.26	25	72	25	72	y	0.20	38	149	38	149	y	0.25	83	248	83	248	y	0.22	54	191	54	191	y	0.20	47	184	47	184	y	ENSMUSG00000003531.16	Dgcr6	chr16	protein_coding	DiGeorge syndrome critical region gene 6
known_NIR_6963	chr16	17890402	17894106	-	17890402;17891517	17891419;17894106	ES	ENSMUST00000123969.3	known	0.00	0	439.0	0	414;464	n	0.01	3	443.0	3	439;447	y	0.00	0	66.0	0	62;70	n	0.00	0	441.0	0	405;477	n	0.00	0	407.5	0	409;406	n	0.04	2	54.0	2	54;54	y	0.00	0	457.5	0	432;483	n	0.00	0	99.5	0	91;108	n	0.00	0	455.5	0	429;482	n	0.00	1	580.0	1	584;576	n	0.00	0	407.5	0	407;408	n	0.00	0	408.5	0	383;434	n	ENSMUSG00000003526.13	Prodh	chr16	protein_coding	proline dehydrogenase
known_NIR_6964	chr16	17895393	17895655	-	17895454	17895655	A3SS	ENSMUST00000123969.3	known	0.03	11	318	11	318	y	0.03	8	267	8	267	y	0.00	0	46	0	46	n	0.03	10	381	10	381	y	0.03	11	324	11	324	y	0.00	0	54	0	54	n	0.00	0	392	0	392	n	0.04	3	73	3	73	y	0.02	7	325	7	325	y	0.02	9	482	9	482	y	0.00	0	332	0	332	n	0.02	8	383	8	383	y	ENSMUSG00000003526.13	Prodh	chr16	protein_coding	proline dehydrogenase
known_NIR_6965	chr16	17895454	17897051	-	17895454;17895747	17895655;17897051	ES	ENSMUST00000123969.3	known	0.00	0	331.5	0	318;345	n	0.00	0	267.5	0	267;268	n	0.00	0	52.0	0	46;58	n	0.00	0	371.0	0	381;361	n	0.00	0	339.0	0	324;354	n	0.00	0	51.5	0	54;49	n	0.00	0	381.0	0	392;370	n	0.00	0	78.5	0	73;84	n	0.00	0	343.0	0	325;361	n	0.00	0	491.5	0	482;501	n	0.01	2	327.0	2	332;322	y	0.00	0	359.5	0	383;336	n	ENSMUSG00000003526.13	Prodh	chr16	protein_coding	proline dehydrogenase
known_NIR_6966	chr16	17895454	17897051	-	17895747	17897051	A3SS&ES	ENSMUST00000141635.8	known	0.00	0	345	0	345	n	0.00	0	268	0	268	n	0.00	0	58	0	58	n	0.00	0	361	0	361	n	0.00	0	354	0	354	n	0.00	0	49	0	49	n	0.00	0	370	0	370	n	0.00	0	84	0	84	n	0.00	0	361	0	361	n	0.00	0	501	0	501	n	0.01	2	322	2	322	y	0.00	0	336	0	336	n	ENSMUSG00000003526.13	Prodh	chr16	protein_coding	proline dehydrogenase
known_NIR_6967	chr16	17899429	17902411	-	17899429	17899913	5pMXE	ENSMUST00000123969.3	known	0.99	357	2	357	2	y	1.00	245	1	245	1	n	1.00	37	0	37	0	n	0.99	394	3	394	3	y	1.00	357	1	357	1	n	1.00	50	0	50	0	n	0.99	325	4	325	4	y	0.96	80	3	80	3	y	0.99	350	4	350	4	y	0.99	452	3	452	3	y	1.00	261	0	261	0	n	0.99	379	3	379	3	y	ENSMUSG00000003526.13	Prodh	chr16	protein_coding	proline dehydrogenase
known_NIR_6968	chr16	18039568	18042082	-	18041241	18042082	A3SS	ENSMUST00000076957.7	known	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.10	1	9	1	9	n	0.00	0	5	0	5	n	0.12	3	21	3	21	y	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.11	1	8	1	8	n	0.17	1	5	1	5	n	0.18	2	9	2	9	y	ENSMUSG00000060166.7	Zdhhc8	chr16	protein_coding	zinc finger, DHHC domain containing 8
known_NIR_6969	chr16	18065289	18065991	-	18065289	18066412	A5SS	ENSMUST00000115645.10	known	0.00	0	97	0	97	n	0.00	0	110	0	110	n	0.00	0	127	0	127	n	0.02	2	80	2	80	y	0.01	2	145	2	145	y	0.00	0	78	0	78	n	0.00	0	100	0	100	n	0.00	0	56	0	56	n	0.02	1	50	1	50	n	0.01	1	105	1	105	n	0.00	0	127	0	127	n	0.00	0	108	0	108	n	ENSMUSG00000005732.15	Ranbp1	chr16	protein_coding	RAN binding protein 1
known_NIR_6970	chr16	18067162	18067350	+	18067115	18067350	A5SS	ENSMUST00000115640.8	known	0.07	1	14	1	14	n	0.13	2	13	2	13	y	0.04	1	25	1	25	n	0.00	0	28	0	28	n	0.00	0	18	0	18	n	0.07	1	13	1	13	n	0.09	2	21	2	21	y	0.07	1	13	1	13	n	0.00	0	15	0	15	n	0.05	1	18	1	18	n	0.00	0	18	0	18	n	0.00	0	16	0	16	n	ENSMUSG00000022721.20	Trmt2a	chr16	protein_coding	TRM2 tRNA methyltransferase 2A
known_NIR_6971	chr16	18068865	18069413	+	18068865	18069020	A3SS&ES	ENSMUST00000059696.12	known	0.04	1	26	1	26	n	0.05	2	35	2	35	y	0.00	0	47	0	47	n	0.05	1	21	1	21	n	0.02	1	50	1	50	n	0.04	1	23	1	23	n	0.00	0	36	0	36	n	0.00	0	20	0	20	n	0.00	0	20	0	20	n	0.00	0	40	0	40	n	0.00	0	50	0	50	n	0.00	0	35	0	35	n	ENSMUSG00000022721.20	Trmt2a	chr16	protein_coding	TRM2 tRNA methyltransferase 2A
known_NIR_6972	chr16	18068865	18069413	+	18069338	18069413	5pMXE	ENSMUST00000128045.3	known	0.03	1	30	1	30	n	0.05	2	38	2	38	y	0.00	0	26	0	26	n	0.04	1	23	1	23	n	0.03	1	30	1	30	n	0.04	1	26	1	26	n	0.00	0	40	0	40	n	0.00	0	17	0	17	n	0.00	0	17	0	17	n	0.00	0	31	0	31	n	0.00	0	27	0	27	n	0.00	0	27	0	27	n	ENSMUSG00000022721.20	Trmt2a	chr16	protein_coding	TRM2 tRNA methyltransferase 2A
known_NIR_6973	chr16	18068865;18069338	18069020;18069413	+	18068865	18069413	cassetteExon	ENSMUST00000145112.9	known	0.97	28.0	1	26;30	1	n	0.95	36.5	2	35;38	2	y	1.00	36.5	0	47;26	0	n	0.96	22.0	1	21;23	1	n	0.98	40.0	1	50;30	1	n	0.96	24.5	1	23;26	1	n	1.00	38.0	0	36;40	0	n	1.00	18.5	0	20;17	0	n	1.00	18.5	0	20;17	0	n	1.00	35.5	0	40;31	0	n	1.00	38.5	0	50;27	0	n	1.00	31.0	0	35;27	0	n	ENSMUSG00000022721.20	Trmt2a	chr16	protein_coding	TRM2 tRNA methyltransferase 2A
known_NIR_6974	chr16	18069524	18070266	+	18069524	18069990	A3SS&ES	ENSMUST00000128045.3	known	0.00	0	34	0	34	n	0.00	0	48	0	48	n	0.02	1	46	1	46	n	0.00	0	35	0	35	n	0.00	0	52	0	52	n	0.00	0	28	0	28	n	0.00	0	39	0	39	n	0.00	0	18	0	18	n	0.02	1	46	1	46	n	0.00	0	39	0	39	n	0.03	2	66	2	66	y	0.00	0	50	0	50	n	ENSMUSG00000022721.20	Trmt2a	chr16	protein_coding	TRM2 tRNA methyltransferase 2A
known_NIR_6975	chr16	18069524	18070266	+	18069524;18070112	18069990;18070266	ES	ENSMUST00000127239.8	known	0.00	0	39.0	0	34;44	n	0.00	0	51.5	0	48;55	n	0.02	1	50.0	1	46;54	n	0.00	0	32.5	0	35;30	n	0.00	0	60.5	0	52;69	n	0.00	0	26.0	0	28;24	n	0.00	0	39.5	0	39;40	n	0.00	0	20.5	0	18;23	n	0.02	1	44.0	1	46;42	n	0.00	0	45.5	0	39;52	n	0.03	2	56.0	2	66;46	y	0.00	0	50.0	0	50;50	n	ENSMUSG00000022721.20	Trmt2a	chr16	protein_coding	TRM2 tRNA methyltransferase 2A
known_NIR_6976	chr16	18069524	18070266	+	18070112	18070266	5pMXE	ENSMUST00000232293.2	known	0.00	0	44	0	44	n	0.00	0	55	0	55	n	0.02	1	54	1	54	n	0.00	0	30	0	30	n	0.00	0	69	0	69	n	0.00	0	24	0	24	n	0.00	0	40	0	40	n	0.00	0	23	0	23	n	0.02	1	42	1	42	n	0.00	0	52	0	52	n	0.04	2	46	2	46	y	0.00	0	50	0	50	n	ENSMUSG00000022721.20	Trmt2a	chr16	protein_coding	TRM2 tRNA methyltransferase 2A
known_NIR_6977	chr16	18070341	18070788	+	18070341;18070699	18070583;18070788	ES	ENSMUST00000127239.8	known	0.00	0	45.5	0	50;41	n	0.00	0	53.5	0	64;43	n	0.00	0	81.0	0	85;77	n	0.04	2	50.5	2	49;52	y	0.02	1	62.5	1	70;55	n	0.00	0	27.5	0	27;28	n	0.00	0	55.5	0	56;55	n	0.00	0	32.5	0	37;28	n	0.00	0	38.5	0	42;35	n	0.03	2	64.0	2	68;60	y	0.00	0	48.5	0	58;39	n	0.04	2	54.0	2	65;43	y	ENSMUSG00000022721.20	Trmt2a	chr16	protein_coding	TRM2 tRNA methyltransferase 2A
known_NIR_6978	chr16	18121700	18125834	-	18121719	18125834	A3SS	ENSMUST00000128580.8	known	0.95	156	8	156	8	y	0.92	108	9	108	9	y	0.95	62	3	62	3	y	0.98	125	3	125	3	y	0.94	156	10	156	10	y	0.96	45	2	45	2	y	0.96	152	7	152	7	y	0.98	55	1	55	1	n	0.89	93	11	93	11	y	0.95	125	6	125	6	y	0.94	89	6	89	6	y	0.95	110	6	110	6	y	ENSMUSG00000013539.15	Tango2	chr16	protein_coding	transport and golgi organization 2
known_NIR_6979	chr16	18128819	18130503	-	18128847	18130503	A3SS	ENSMUST00000128580.8	known	0.00	0	141	0	141	n	0.00	0	117	0	117	n	0.00	0	54	0	54	n	0.00	0	113	0	113	n	0.00	0	167	0	167	n	0.00	0	52	0	52	n	0.02	4	157	4	157	y	0.00	0	65	0	65	n	0.00	0	83	0	83	n	0.03	3	117	3	117	y	0.00	0	112	0	112	n	0.02	2	97	2	97	y	ENSMUSG00000013539.15	Tango2	chr16	protein_coding	transport and golgi organization 2
known_NIR_6980	chr16	18142314	18149218	-	18142314	18161759	A5SS	ENSMUST00000115628.10	known	0.04	1	25	1	25	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	33	0	33	n	0.05	2	39	2	39	y	0.00	0	10	0	10	n	0.00	0	41	0	41	n	0.00	0	14	0	14	n	0.09	2	20	2	20	y	0.00	0	15	0	15	n	0.04	1	23	1	23	n	0.00	0	12	0	12	n	ENSMUSG00000013539.15	Tango2	chr16	protein_coding	transport and golgi organization 2
known_NIR_6981	chr16	18142314	18156473	-	18142314	18161662	A5SS	ENSMUST00000231372.2	known	0.06	1	16	1	16	n	0.20	2	8	2	8	y	0.14	1	6	1	6	n	0.08	2	23	2	23	y	0.19	5	22	5	22	y	0.50	5	5	5	5	y	0.10	4	35	4	35	y	0.14	1	6	1	6	n	0.14	3	19	3	19	y	0.23	3	10	3	10	y	0.25	5	15	5	15	y	0.27	4	11	4	11	y	ENSMUSG00000013539.15	Tango2	chr16	protein_coding	transport and golgi organization 2
known_NIR_6982	chr16	18142314	18161662	-	18142314	18149218	5pMXE	ENSMUST00000232588.2	known	0.94	16	1	16	1	n	1.00	8	0	8	0	n	1.00	6	0	6	0	n	1.00	23	0	23	0	n	0.92	22	2	22	2	y	1.00	5	0	5	0	n	1.00	35	0	35	0	n	1.00	6	0	6	0	n	0.90	19	2	19	2	y	1.00	10	0	10	0	n	0.94	15	1	15	1	n	1.00	11	0	11	0	n	ENSMUSG00000013539.15	Tango2	chr16	protein_coding	transport and golgi organization 2
known_NIR_6983	chr16	18142314	18161662	-	18142314	18161759	A5SS	ENSMUST00000115628.10	known	0.39	16	25	16	25	y	0.35	8	15	8	15	y	0.38	6	10	6	10	y	0.41	23	33	23	33	y	0.36	22	39	22	39	y	0.33	5	10	5	10	y	0.46	35	41	35	41	y	0.30	6	14	6	14	y	0.49	19	20	19	20	y	0.40	10	15	10	15	y	0.39	15	23	15	23	y	0.48	11	12	11	12	y	ENSMUSG00000013539.15	Tango2	chr16	protein_coding	transport and golgi organization 2
known_NIR_6984	chr16	18210577	18214824	+	18207255	18214824	A5SS	ENSMUST00000239533.1	known	0.00	0	1	0	1	n	1.00	2	0	2	0	n	0.57	4	3	4	3	n	0.50	3	3	3	3	n	0.75	9	3	9	3	y	0.75	3	1	3	1	n	0.62	5	3	5	3	n	1.00	2	0	2	0	n	0.50	1	1	1	1	n	0.50	2	2	2	2	n	1.00	2	0	2	0	n	0.00	0	4	0	4	n	ENSMUSG00000118669.2	Arvcf	chr16	protein_coding	--
known_NIR_6985	chr16	18223295	18224357	+	18223295	18223852	A3SS	ENSMUST00000239538.1	known	0.26	5	14	5	14	y	0.17	2	10	2	10	y	0.39	7	11	7	11	y	0.12	2	14	2	14	y	0.31	5	11	5	11	y	0.56	9	7	9	7	y	0.30	7	16	7	16	y	0.50	2	2	2	2	n	0.50	6	6	6	6	y	0.27	4	11	4	11	y	0.24	5	16	5	16	y	0.32	8	17	8	17	y	ENSMUSG00000118669.2	Arvcf	chr16	protein_coding	--
known_NIR_6986	chr16	18223295	18224357	+	18223295;18223971	18223852;18224357	ES	ENSMUST00000239533.1	known	0.27	5	13.5	5	14;13	y	0.17	2	9.5	2	10;9	y	0.41	7	10.0	7	11;9	y	0.14	2	12.0	2	14;10	y	0.33	5	10.0	5	11;9	y	0.67	9	4.5	9	7;2	y	0.32	7	15.0	7	16;14	y	0.67	2	1.0	2	2;0	n	0.57	6	4.5	6	6;3	y	0.31	4	9.0	4	11;7	y	0.33	5	10.0	5	16;4	y	0.34	8	15.5	8	17;14	y	ENSMUSG00000118669.2	Arvcf	chr16	protein_coding	--
known_NIR_6987	chr16	18230707	18243054	-	18230707	18232016	5pMXE	ENSMUST00000165430.8	known	0.73	635	232	635	232	y	0.79	556	144	556	144	y	0.95	506	25	506	25	y	0.62	811	503	811	503	y	0.98	877	20	877	20	y	0.99	243	2	243	2	y	0.91	833	84	833	84	y	0.97	300	8	300	8	y	0.54	611	513	611	513	y	0.58	934	687	934	687	y	0.43	635	837	635	837	y	0.68	685	321	685	321	y	ENSMUSG00000000326.14	Comt	chr16	protein_coding	catechol-O-methyltransferase
known_NIR_6988	chr16	18230707	18245106	-	18230707	18232016	5pMXE	ENSMUST00000165430.8	known	0.50	228	232	228	232	y	0.59	205	144	205	144	y	0.90	217	25	217	25	y	0.35	274	503	274	503	y	0.94	292	20	292	20	y	0.98	92	2	92	2	y	0.76	272	84	272	84	y	0.92	88	8	88	8	y	0.34	262	513	262	513	y	0.30	296	687	296	687	y	0.22	238	837	238	837	y	0.42	230	321	230	321	y	ENSMUSG00000000326.14	Comt	chr16	protein_coding	catechol-O-methyltransferase
known_NIR_6989	chr16	18230707;18243110	18243054;18245106	-	18230707	18245106	cassetteExon	ENSMUST00000115609.10	known	0.67	466.5	228	635;298	228	y	0.66	406.5	205	556;257	205	y	0.63	363.5	217	506;221	217	y	0.68	580.0	274	811;349	274	y	0.69	644.5	292	877;412	292	y	0.65	173.5	92	243;104	92	y	0.69	600.0	272	833;367	272	y	0.70	204.0	88	300;108	88	y	0.63	449.5	262	611;288	262	y	0.69	660.5	296	934;387	296	y	0.66	457.5	238	635;280	238	y	0.68	490.0	230	685;295	230	y	ENSMUSG00000000326.14	Comt	chr16	protein_coding	catechol-O-methyltransferase
known_NIR_6990	chr16	18247779	18248561	+	18245309	18248561	A5SS	ENSMUST00000206606.3	known	0.00	0	69	0	69	n	0.04	2	44	2	44	y	0.00	0	62	0	62	n	0.03	2	65	2	65	y	0.05	4	83	4	83	y	0.00	0	46	0	46	n	0.00	0	57	0	57	n	0.00	0	38	0	38	n	0.00	0	50	0	50	n	0.01	1	91	1	91	n	0.00	0	56	0	56	n	0.00	0	74	0	74	n	ENSMUSG00000075704.18	Txnrd2	chr16	protein_coding	thioredoxin reductase 2
known_NIR_6991	chr16	18290999	18293432	+	18290999;18291636	18291544;18293432	ES	ENSMUST00000205679.3	known	0.04	2	54.5	2	50;59	y	0.02	1	63.5	1	63;64	n	0.17	12	60.5	12	47;74	y	0.15	11	63.5	11	79;48	y	0.04	3	69.5	3	74;65	y	0.08	2	24.5	2	21;28	y	0.05	4	77.5	4	82;73	y	0.02	1	39.5	1	36;43	n	0.09	5	48.5	5	50;47	y	0.04	4	110.0	4	109;111	y	0.07	5	68.0	5	71;65	y	0.08	6	66.5	6	75;58	y	ENSMUSG00000075704.18	Txnrd2	chr16	protein_coding	thioredoxin reductase 2
known_NIR_6992	chr16	18317890	18319690	+	18317890	18359185	A3SS	ENSMUST00000231621.2	known	0.20	2	8	2	8	y	0.40	2	3	2	3	n	0.14	1	6	1	6	n	0.25	2	6	2	6	n	0.27	4	11	4	11	y	0.57	4	3	4	3	n	0.60	3	2	3	2	n	0.40	2	3	2	3	n	0.60	3	2	3	2	n	0.36	5	9	5	9	y	0.29	2	5	2	5	n	0.50	2	2	2	2	n	ENSMUSG00000000884.18	Gnb1l	chr16	protein_coding	guanine nucleotide binding protein (G protein), beta polypeptide 1-like
known_NIR_6993	chr16	18359847	18362865	+	18359847	18362861	A3SS	ENSMUST00000231621.2	known	0.00	0	5	0	5	n	0.40	2	3	2	3	n	0.12	1	7	1	7	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.15	2	11	2	11	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000000884.18	Gnb1l	chr16	protein_coding	guanine nucleotide binding protein (G protein), beta polypeptide 1-like
known_NIR_6994	chr16	18441990	18442861	-	18441990	18442071	5pMXE	ENSMUST00000231642.2	known	-	-	-	-	-	-	0.00	0	3	0	3	n	0.04	1	26	1	26	n	-	-	-	-	-	-	0.10	2	18	2	18	y	0.00	0	25	0	25	n	0.00	0	7	0	7	n	0.00	0	20	0	20	n	0.33	1	2	1	2	n	0.11	1	8	1	8	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	ENSMUSG00000116594.2	Gm49601	chr16	protein_coding	predicted gene, 49601
known_NIR_6995	chr16	18441990	18442861	-	18441990;18442167	18442071;18442861	ES	ENSMUST00000231335.2	known	0.00	0	0.5	0	0;1	n	0.00	0	3.0	0	3;3	n	0.03	1	39.0	1	26;52	n	-	-	-	-	-	-	0.11	2	16.0	2	18;14	y	0.00	0	22.5	0	25;20	n	0.00	0	7.0	0	7;7	n	0.00	0	19.0	0	20;18	n	0.33	1	2.0	1	2;2	n	0.10	1	9.0	1	8;10	n	0.00	0	8.5	0	9;8	n	0.00	0	7.0	0	6;8	n	ENSMUSG00000116594.2	Gm49601	chr16	protein_coding	predicted gene, 49601
known_NIR_6996	chr16	18633712	18634079	+	18633686	18634079	A5SS	ENSMUST00000168822.2	known	0.89	83	10	83	10	y	0.91	72	7	72	7	y	0.94	145	9	145	9	y	0.88	84	12	84	12	y	0.90	120	13	120	13	y	0.84	79	15	79	15	y	0.86	98	16	98	16	y	0.94	60	4	60	4	y	0.75	63	21	63	21	y	0.98	125	2	125	2	y	0.97	95	3	95	3	y	0.88	101	14	101	14	y	ENSMUSG00000005262.14	Ufd1	chr16	protein_coding	ubiquitin recognition factor in ER-associated degradation 1
known_NIR_6997	chr16	18634111	18636653	+	18634111	18634602	3pMXE	ENSMUST00000164795.2	known	0.98	103	2	103	2	y	1.00	88	0	88	0	n	0.98	175	3	175	3	y	0.99	110	1	110	1	n	0.99	132	2	132	2	y	1.00	117	0	117	0	n	0.98	128	2	128	2	y	1.00	84	0	84	0	n	0.98	107	2	107	2	y	0.99	149	1	149	1	n	0.98	108	2	108	2	y	1.00	140	0	140	0	n	ENSMUSG00000005262.14	Ufd1	chr16	protein_coding	ubiquitin recognition factor in ER-associated degradation 1
known_NIR_6998	chr16	18634111;18634766	18634602;18636653	+	18634111	18636653	cassetteExon	ENSMUST00000232311.2	known	0.02	2.0	103	2;2	103	y	0.00	0.0	88	0;0	88	n	0.01	1.5	175	3;0	175	n	0.03	3.0	110	1;5	110	n	0.01	1.0	132	2;0	132	n	0.00	0.0	117	0;0	117	n	0.01	1.5	128	2;1	128	n	0.01	0.5	84	0;1	84	n	0.01	1.0	107	2;0	107	n	0.01	1.0	149	1;1	149	n	0.01	1.0	108	2;0	108	n	0.00	0.0	140	0;0	140	n	ENSMUSG00000005262.14	Ufd1	chr16	protein_coding	ubiquitin recognition factor in ER-associated degradation 1
known_NIR_6999	chr16	18655623	18655984	+	18655623	18657840	A3SS	ENSMUST00000055413.13	known	0.04	2	53	2	53	y	0.00	0	38	0	38	n	0.02	1	42	1	42	n	0.00	0	56	0	56	n	0.04	2	54	2	54	y	0.04	1	22	1	22	n	0.02	1	60	1	60	n	0.00	0	36	0	36	n	0.02	1	56	1	56	n	0.02	2	82	2	82	y	0.03	2	62	2	62	y	0.05	3	53	3	53	y	ENSMUSG00000071632.11	2510002D24Rik	chr16	protein_coding	RIKEN cDNA 2510002D24 gene
known_NIR_7000	chr16	18694186	18695221	-	18694157	18695221	A3SS	ENSMUST00000023391.16	known	0.06	4	65	4	65	y	0.06	4	66	4	66	y	0.08	5	60	5	60	y	0.04	4	87	4	87	y	0.04	3	71	3	71	y	0.06	3	48	3	48	y	0.03	3	86	3	86	y	0.13	6	41	6	41	y	0.02	1	61	1	61	n	0.06	7	115	7	115	y	0.06	6	94	6	94	y	0.09	8	80	8	80	y	ENSMUSG00000022706.17	Mrpl40	chr16	protein_coding	mitochondrial ribosomal protein L40
known_NIR_7001	chr16	18713586;18714677	18714653;18715204	+	18713586	18715204	cassetteExon	ENSMUST00000190050.2	known	0.18	2.0	9	2;2	9	y	0.17	2.0	10	2;2	10	y	0.00	0.0	24	0;0	24	n	0.19	2.5	11	3;2	11	y	0.09	3.0	29	6;0	29	n	0.03	0.5	17	1;0	17	n	0.00	0.0	11	0;0	11	n	0.00	0.0	12	0;0	12	n	0.15	2.5	14	3;2	14	y	0.03	0.5	19	1;0	19	n	0.00	0.0	11	0;0	11	n	0.03	0.5	19	1;0	19	n	ENSMUSG00000099908.2	Gm28539	chr16	protein_coding	predicted gene 28539
known_NIR_7002	chr16	18715523	18716448	+	18715314	18716448	A5SS	ENSMUST00000190050.2	known	0.04	1	22	1	22	n	0.00	0	4	0	4	n	0.04	1	22	1	22	n	0.08	1	12	1	12	n	0.04	1	24	1	24	n	0.00	0	11	0	11	n	0.14	3	19	3	19	y	0.12	2	15	2	15	y	0.00	0	16	0	16	n	0.07	2	28	2	28	y	0.12	2	15	2	15	y	0.00	0	23	0	23	n	ENSMUSG00000099908.2	Gm28539	chr16	protein_coding	predicted gene 28539
known_NIR_7003	chr16	18765297;18765992	18765894;18766164	+	18765297	18766164	cassetteExon	ENSMUST00000190050.2	known	0.09	1.5	16	0;3	16	n	0.00	0.0	18	0;0	18	n	0.12	4.0	29	6;2	29	y	0.04	0.5	11	1;0	11	n	0.11	3.5	29	2;5	29	y	0.07	1.0	13	0;2	13	n	0.00	0.0	22	0;0	22	n	0.07	1.5	19	2;1	19	n	0.12	1.5	11	2;1	11	n	0.15	4.0	23	2;6	23	y	0.03	0.5	19	1;0	19	n	0.09	2.0	21	4;0	21	n	ENSMUSG00000099908.2	Gm28539	chr16	protein_coding	predicted gene 28539
known_NIR_7004	chr16	19916421	19925413	+	19916421;19920804	19920742;19925413	ES	ENSMUST00000023509.5	known	0.00	0	13.5	0	12;15	n	0.13	1	6.5	1	5;8	n	0.24	8	26.0	8	23;29	y	0.07	2	28.5	2	23;34	y	0.00	0	24.0	0	25;23	n	0.07	2	26.5	2	23;30	y	0.16	5	27.0	5	19;35	y	0.08	2	22.5	2	19;26	y	0.14	4	24.5	4	17;32	y	0.04	1	27.0	1	16;38	n	0.00	0	12.0	0	9;15	n	0.07	2	25.0	2	24;26	y	ENSMUSG00000062901.4	Klhl24	chr16	protein_coding	kelch-like 24
known_NIR_7005	chr16	19959985;19969310	19969192;19971659	+	19959985	19971659	cassetteExon	ENSMUST00000090052.11	known	0.57	4.0	3	3;5	3	y	0.00	0.0	1	0;0	1	n	1.00	3.5	0	2;5	0	n	0.82	4.5	1	5;4	1	n	0.50	2.0	2	2;2	2	n	1.00	1.5	0	3;0	0	n	1.00	2.5	0	2;3	0	n	0.43	3.0	4	2;4	4	y	0.67	2.0	1	0;4	1	n	1.00	4.5	0	2;7	0	n	1.00	1.0	0	1;1	0	n	0.78	3.5	1	3;4	1	n	ENSMUSG00000041215.17	Yeats2	chr16	protein_coding	YEATS domain containing 2
known_NIR_7006	chr16	19975873	19977887	+	19975882	19977887	A5SS	ENSMUST00000090052.11	known	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.50	3	3	3	3	n	0.18	2	9	2	9	y	0.07	1	13	1	13	n	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.42	5	7	5	7	y	0.17	1	5	1	5	n	0.00	0	9	0	9	n	1.00	1	0	1	0	n	0.36	4	7	4	7	y	ENSMUSG00000041215.17	Yeats2	chr16	protein_coding	YEATS domain containing 2
known_NIR_7007	chr16	20038441	20040411	+	20038441	20040424	A3SS	ENSMUST00000090052.11	known	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.06	1	16	1	16	n	0.00	0	15	0	15	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.09	2	21	2	21	y	ENSMUSG00000041215.17	Yeats2	chr16	protein_coding	YEATS domain containing 2
known_NIR_7008	chr16	20101570	20104515	-	20101570	20101674	5pMXE	ENSMUST00000155832.2	known	0.00	0	118	0	118	n	0.01	2	151	2	151	y	0.00	0	129	0	129	n	0.00	0	103	0	103	n	0.00	0	144	0	144	n	0.00	0	77	0	77	n	0.01	1	153	1	153	n	0.00	0	91	0	91	n	0.00	0	109	0	109	n	0.01	1	160	1	160	n	0.00	0	123	0	123	n	0.00	0	170	0	170	n	ENSMUSG00000033918.17	Parl	chr16	protein_coding	presenilin associated, rhomboid-like
known_NIR_7009	chr16	20101570	20104515	-	20101570;20101775	20101674;20104515	ES	ENSMUST00000152887.3	known	0.00	0	112.5	0	118;107	n	0.01	2	150.5	2	151;150	y	0.00	0	123.5	0	129;118	n	0.00	0	105.0	0	103;107	n	0.00	0	143.5	0	144;143	n	0.00	0	79.0	0	77;81	n	0.01	1	150.0	1	153;147	n	0.00	0	81.5	0	91;72	n	0.00	0	104.0	0	109;99	n	0.01	1	160.0	1	160;160	n	0.00	0	129.0	0	123;135	n	0.00	0	165.5	0	170;161	n	ENSMUSG00000033918.17	Parl	chr16	protein_coding	presenilin associated, rhomboid-like
known_NIR_7010	chr16	20106702	20112048	-	20106702	20112104	A5SS	ENSMUST00000152887.3	known	0.02	1	55	1	55	n	0.01	1	69	1	69	n	0.04	4	99	4	99	y	0.00	0	56	0	56	n	0.02	2	90	2	90	y	0.02	1	60	1	60	n	0.00	0	82	0	82	n	0.00	0	67	0	67	n	0.00	0	59	0	59	n	0.00	0	104	0	104	n	0.00	0	93	0	93	n	0.01	1	92	1	92	n	ENSMUSG00000033918.17	Parl	chr16	protein_coding	presenilin associated, rhomboid-like
known_NIR_7011	chr16	20106702	20112104	-	20106702	20120959	A5SS	ENSMUST00000232484.2	known	0.98	55	1	55	1	n	1.00	69	0	69	0	n	1.00	99	0	99	0	n	0.98	56	1	56	1	n	1.00	90	0	90	0	n	1.00	60	0	60	0	n	1.00	82	0	82	0	n	1.00	67	0	67	0	n	0.97	59	2	59	2	y	1.00	104	0	104	0	n	1.00	93	0	93	0	n	1.00	92	0	92	0	n	ENSMUSG00000033918.17	Parl	chr16	protein_coding	presenilin associated, rhomboid-like
known_NIR_7012	chr16	20106702	20116343	-	20106702;20112152	20112048;20116343	ES	ENSMUST00000136252.8	known	0.06	2	34.0	2	1;67	n	0.08	3	33.0	3	1;65	n	0.07	4	56.5	4	4;109	y	0.00	0	37.0	0	0;74	n	0.02	1	43.5	1	2;85	n	0.00	0	31.5	0	1;62	n	0.03	1	34.5	1	0;69	n	0.06	2	32.5	2	0;65	n	0.00	0	37.0	0	0;74	n	0.07	4	57.5	4	0;115	n	0.00	0	39.0	0	0;78	n	0.02	1	50.5	1	1;100	n	ENSMUSG00000033918.17	Parl	chr16	protein_coding	presenilin associated, rhomboid-like
known_NIR_7013	chr16	20106702	20116343	-	20106702;20112152	20112104;20116343	ES	ENSMUST00000152887.3	known	0.03	2	61.0	2	55;67	y	0.04	3	67.0	3	69;65	y	0.04	4	104.0	4	99;109	y	0.00	0	65.0	0	56;74	n	0.01	1	87.5	1	90;85	n	0.00	0	61.0	0	60;62	n	0.01	1	75.5	1	82;69	n	0.03	2	66.0	2	67;65	y	0.00	0	66.5	0	59;74	n	0.04	4	109.5	4	104;115	y	0.00	0	85.5	0	93;78	n	0.01	1	96.0	1	92;100	n	ENSMUSG00000033918.17	Parl	chr16	protein_coding	presenilin associated, rhomboid-like
known_NIR_7014	chr16	20106702	20116343	-	20112152	20116343	3pMXE	ENSMUST00000143648.2	known	0.03	2	67	2	67	y	0.04	3	65	3	65	y	0.04	4	109	4	109	y	0.00	0	74	0	74	n	0.01	1	85	1	85	n	0.00	0	62	0	62	n	0.01	1	69	1	69	n	0.03	2	65	2	65	y	0.00	0	74	0	74	n	0.03	4	115	4	115	y	0.00	0	78	0	78	n	0.01	1	100	1	100	n	ENSMUSG00000033918.17	Parl	chr16	protein_coding	presenilin associated, rhomboid-like
known_NIR_7015	chr16	20116476	20116881	-	20116483	20116881	A3SS	ENSMUST00000152887.3	known	0.00	0	117	0	117	n	0.00	0	102	0	102	n	0.00	0	147	0	147	n	0.00	0	98	0	98	n	0.00	0	140	0	140	n	0.00	0	58	0	58	n	0.00	0	136	0	136	n	0.00	0	65	0	65	n	0.00	0	91	0	91	n	0.00	0	161	0	161	n	0.03	4	118	4	118	y	0.00	0	147	0	147	n	ENSMUSG00000033918.17	Parl	chr16	protein_coding	presenilin associated, rhomboid-like
known_NIR_7016	chr16	20117076	20120959	-	20106702	20120959	A3SS	ENSMUST00000232484.2	known	0.99	84	1	84	1	n	1.00	60	0	60	0	n	1.00	80	0	80	0	n	0.99	101	1	101	1	n	1.00	88	0	88	0	n	1.00	65	0	65	0	n	1.00	104	0	104	0	n	1.00	57	0	57	0	n	0.97	61	2	61	2	y	1.00	112	0	112	0	n	1.00	65	0	65	0	n	1.00	88	0	88	0	n	ENSMUSG00000033918.17	Parl	chr16	protein_coding	presenilin associated, rhomboid-like
known_NIR_7017	chr16	20117076	20120959	-	20117076	20120380	5pMXE	ENSMUST00000152887.3	known	1.00	84	0	84	0	n	1.00	60	0	60	0	n	1.00	80	0	80	0	n	1.00	101	0	101	0	n	1.00	88	0	88	0	n	1.00	65	0	65	0	n	0.98	104	2	104	2	y	1.00	57	0	57	0	n	1.00	61	0	61	0	n	1.00	112	0	112	0	n	1.00	65	0	65	0	n	1.00	88	0	88	0	n	ENSMUSG00000033918.17	Parl	chr16	protein_coding	presenilin associated, rhomboid-like
known_NIR_7018	chr16	20327569	20327688	+	20327569	20327711	A3SS	ENSMUST00000003320.14	known	0.00	0	144	0	144	n	0.00	0	162	0	162	n	0.00	0	115	0	115	n	0.00	0	123	0	123	n	0.01	2	157	2	157	y	0.00	0	73	0	73	n	0.01	2	177	2	177	y	0.00	0	72	0	72	n	0.00	0	117	0	117	n	0.00	0	176	0	176	n	0.00	0	155	0	155	n	0.00	0	162	0	162	n	ENSMUSG00000003235.14	Eif2b5	chr16	protein_coding	eukaryotic translation initiation factor 2B, subunit 5 epsilon
known_NIR_7019	chr16	20354351	20358058	+	20354351	20356368	3pMXE	ENSMUST00000133443.2	known	0.02	7	325	7	325	y	0.01	2	270	2	270	y	0.00	2	537	2	537	y	0.02	10	463	10	463	y	0.01	4	567	4	567	y	0.01	4	341	4	341	y	0.01	4	444	4	444	y	0.01	3	341	3	341	y	0.01	2	336	2	336	y	0.01	3	493	3	493	y	0.01	2	320	2	320	y	0.01	6	428	6	428	y	ENSMUSG00000022841.16	Ap2m1	chr16	protein_coding	adaptor-related protein complex 2, mu 1 subunit
known_NIR_7020	chr16	20354351	20358058	+	20354351;20356484	20356368;20358058	ES	ENSMUST00000090023.13	known	0.02	7	370.5	7	325;416	y	0.01	2	308.0	2	270;346	y	0.00	2	593.5	2	537;650	y	0.02	10	507.0	10	463;551	y	0.01	4	653.5	4	567;740	y	0.01	4	362.0	4	341;383	y	0.01	4	490.5	4	444;537	y	0.01	3	368.0	3	341;395	y	0.01	2	358.0	2	336;380	y	0.01	3	571.0	3	493;649	y	0.01	2	376.5	2	320;433	y	0.01	6	465.0	6	428;502	y	ENSMUSG00000022841.16	Ap2m1	chr16	protein_coding	adaptor-related protein complex 2, mu 1 subunit
known_NIR_7021	chr16	20359165	20359725	+	20359563	20359725	5pMXE	ENSMUST00000135420.3	known	0.16	90	487	90	487	y	0.16	74	402	74	402	y	0.07	63	777	63	777	y	0.16	103	527	103	527	y	0.14	122	737	122	737	y	0.13	57	397	57	397	y	0.13	93	615	93	615	y	0.15	71	413	71	413	y	0.11	52	414	52	414	y	0.12	91	653	91	653	y	0.13	68	438	68	438	y	0.13	92	616	92	616	y	ENSMUSG00000022841.16	Ap2m1	chr16	protein_coding	adaptor-related protein complex 2, mu 1 subunit
known_NIR_7022	chr16	20359165;20359563	20359558;20359725	+	20359165	20359725	cassetteExon	ENSMUST00000090023.13	known	0.73	243.5	90	0;487	90	n	0.73	201.0	74	0;402	74	n	0.86	388.5	63	0;777	63	n	0.72	263.5	103	0;527	103	n	0.86	755.0	122	773;737	122	y	0.88	404.0	57	411;397	57	y	0.77	307.5	93	0;615	93	n	0.74	206.5	71	0;413	71	n	0.80	207.0	52	0;414	52	n	0.78	326.5	91	0;653	91	n	0.76	219.0	68	0;438	68	n	0.77	308.0	92	0;616	92	n	ENSMUSG00000022841.16	Ap2m1	chr16	protein_coding	adaptor-related protein complex 2, mu 1 subunit
known_NIR_7023	chr16	20369437	20370229	+	20369437	20370224	A3SS	ENSMUST00000003319.6	known	0.05	5	90	5	90	y	0.02	2	90	2	90	y	0.05	7	136	7	136	y	0.00	0	73	0	73	n	0.07	10	128	10	128	y	0.07	4	51	4	51	y	0.05	6	107	6	107	y	0.00	0	68	0	68	n	0.06	4	63	4	63	y	0.00	0	98	0	98	n	0.03	3	94	3	94	y	0.04	4	101	4	101	y	ENSMUSG00000003234.17	Abcf3	chr16	protein_coding	ATP-binding cassette, sub-family F (GCN20), member 3
known_NIR_7024	chr16	20370904	20371073	+	20370904	20371009	A3SS	ENSMUST00000003319.6	known	0.08	10	111	10	111	y	0.09	9	93	9	93	y	0.09	14	134	14	134	y	0.12	14	103	14	103	y	0.11	15	121	15	121	y	0.10	6	53	6	53	y	0.00	0	90	0	90	n	0.00	0	68	0	68	n	0.15	11	64	11	64	y	0.08	10	112	10	112	y	0.09	9	94	9	94	y	0.00	0	102	0	102	n	ENSMUSG00000003234.17	Abcf3	chr16	protein_coding	ATP-binding cassette, sub-family F (GCN20), member 3
known_NIR_7025	chr16	20377498	20378041	+	20377579	20378041	A5SS	ENSMUST00000003319.6	known	0.00	0	112	0	112	n	0.01	1	111	1	111	n	0.02	3	147	3	147	y	0.01	1	108	1	108	n	0.01	2	147	2	147	y	0.00	0	72	0	72	n	0.00	0	126	0	126	n	0.00	0	93	0	93	n	0.00	0	94	0	94	n	0.02	2	101	2	101	y	0.00	0	93	0	93	n	0.00	0	128	0	128	n	ENSMUSG00000003234.17	Abcf3	chr16	protein_coding	ATP-binding cassette, sub-family F (GCN20), member 3
known_NIR_7026	chr16	20426634	20427492	-	20426634;20427396	20427236;20427492	ES	ENSMUST00000231386.2	known	0.00	0	45.0	0	37;53	n	0.00	0	38.0	0	39;37	n	0.03	2	64.5	2	48;81	y	0.03	2	56.0	2	50;62	y	0.01	1	66.5	1	52;81	n	0.00	0	38.5	0	41;36	n	0.00	0	65.0	0	57;73	n	0.00	0	39.5	0	20;59	n	0.00	0	35.5	0	25;46	n	0.00	0	57.5	0	45;70	n	0.02	1	57.0	1	38;76	n	0.03	2	57.0	2	37;77	y	ENSMUSG00000033809.16	Alg3	chr16	protein_coding	asparagine-linked glycosylation 3 (alpha-1,3-mannosyltransferase)
known_NIR_7027	chr16	20427639	20429293	-	20427639	20427737	A5SS&ES	ENSMUST00000231362.2	known	0.11	5	39	5	39	y	0.07	3	39	3	39	y	0.08	5	55	5	55	y	0.10	5	45	5	45	y	0.03	2	67	2	67	y	0.04	2	48	2	48	y	0.06	3	46	3	46	y	0.07	3	37	3	37	y	0.17	6	29	6	29	y	0.07	4	53	4	53	y	0.15	6	35	6	35	y	0.05	3	57	3	57	y	ENSMUSG00000033809.16	Alg3	chr16	protein_coding	asparagine-linked glycosylation 3 (alpha-1,3-mannosyltransferase)
known_NIR_7028	chr16	20427639	20429293	-	20427639;20427836	20427737;20429293	ES	ENSMUST00000231386.2	known	0.14	5	31.5	5	39;24	y	0.09	3	32.0	3	39;25	y	0.09	5	49.5	5	55;44	y	0.13	5	34.0	5	45;23	y	0.03	2	58.0	2	67;49	y	0.04	2	42.5	2	48;37	y	0.06	3	48.5	3	46;51	y	0.08	3	32.5	3	37;28	y	0.21	6	22.5	6	29;16	y	0.09	4	40.5	4	53;28	y	0.15	6	34.0	6	35;33	y	0.07	3	38.5	3	57;20	y	ENSMUSG00000033809.16	Alg3	chr16	protein_coding	asparagine-linked glycosylation 3 (alpha-1,3-mannosyltransferase)
known_NIR_7029	chr16	20427639	20429330	-	20427639	20427737	A5SS&ES	ENSMUST00000231386.2	known	0.00	0	39	0	39	n	0.05	2	39	2	39	y	0.02	1	55	1	55	n	0.02	1	45	1	45	n	0.00	0	67	0	67	n	0.00	0	48	0	48	n	0.00	0	46	0	46	n	0.00	0	37	0	37	n	0.00	0	29	0	29	n	0.04	2	53	2	53	y	0.05	2	35	2	35	y	0.03	2	57	2	57	y	ENSMUSG00000033809.16	Alg3	chr16	protein_coding	asparagine-linked glycosylation 3 (alpha-1,3-mannosyltransferase)
known_NIR_7030	chr16	20427639	20429330	-	20427639;20427836	20427737;20429330	ES	ENSMUST00000231362.2	known	0.00	0	20.5	0	39;2	n	0.09	2	19.5	2	39;0	n	0.03	1	28.5	1	55;2	n	0.04	1	22.5	1	45;0	n	0.00	0	33.5	0	67;0	n	0.00	0	24.0	0	48;0	n	0.00	0	23.0	0	46;0	n	0.00	0	18.5	0	37;0	n	0.00	0	15.0	0	29;1	n	0.07	2	27.5	2	53;2	y	0.10	2	19.0	2	35;3	y	0.07	2	28.5	2	57;0	n	ENSMUSG00000033809.16	Alg3	chr16	protein_coding	asparagine-linked glycosylation 3 (alpha-1,3-mannosyltransferase)
known_NIR_7031	chr16	20427836	20429330	-	20427836	20429293	A5SS	ENSMUST00000231386.2	known	0.08	2	24	2	24	y	0.00	0	25	0	25	n	0.04	2	44	2	44	y	0.00	0	23	0	23	n	0.00	0	49	0	49	n	0.00	0	37	0	37	n	0.00	0	51	0	51	n	0.00	0	28	0	28	n	0.06	1	16	1	16	n	0.07	2	28	2	28	y	0.08	3	33	3	33	y	0.00	0	20	0	20	n	ENSMUSG00000033809.16	Alg3	chr16	protein_coding	asparagine-linked glycosylation 3 (alpha-1,3-mannosyltransferase)
known_NIR_7032	chr16	20427836	20430324	-	20427836	20429293	5pMXE	ENSMUST00000231386.2	known	0.00	0	24	0	24	n	0.00	0	25	0	25	n	0.00	0	44	0	44	n	0.00	0	23	0	23	n	0.00	0	49	0	49	n	0.07	3	37	3	37	y	0.00	0	51	0	51	n	0.00	0	28	0	28	n	0.00	0	16	0	16	n	0.00	0	28	0	28	n	0.00	0	33	0	33	n	0.00	0	20	0	20	n	ENSMUSG00000033809.16	Alg3	chr16	protein_coding	asparagine-linked glycosylation 3 (alpha-1,3-mannosyltransferase)
known_NIR_7033	chr16	20470601	20470902	+	20470601	20470994	A3SS	ENSMUST00000007212.9	known	0.00	0	231	0	231	n	0.00	0	163	0	163	n	0.00	0	419	0	419	n	0.00	0	326	0	326	n	0.00	0	400	0	400	n	0.00	0	186	0	186	n	0.01	2	300	2	300	y	0.00	0	168	0	168	n	0.01	1	197	1	197	n	0.00	0	346	0	346	n	0.00	0	200	0	200	n	0.00	0	296	0	296	n	ENSMUSG00000006998.17	Psmd2	chr16	protein_coding	proteasome (prosome, macropain) 26S subunit, non-ATPase, 2
known_NIR_7034	chr16	20491626	20492618	+	20492405	20492618	5pMXE	ENSMUST00000156226.8	known	0.04	4	100	4	100	y	0.09	5	49	5	49	y	0.03	5	174	5	174	y	0.08	13	160	13	160	y	0.07	15	196	15	196	y	0.06	6	87	6	87	y	0.03	4	135	4	135	y	0.01	1	132	1	132	n	0.01	1	109	1	109	n	0.10	17	158	17	158	y	0.06	5	78	5	78	y	0.02	3	134	3	134	y	ENSMUSG00000045983.17	Eif4g1	chr16	protein_coding	eukaryotic translation initiation factor 4, gamma 1
known_NIR_7035	chr16	20491626;20492405	20492349;20492618	+	20491626	20492618	cassetteExon	ENSMUST00000044783.14	known	0.96	89.5	4	79;100	4	y	0.89	42.5	5	36;49	5	y	0.97	159.5	5	145;174	5	y	0.91	139.5	13	119;160	13	y	0.91	161.0	15	126;196	15	y	0.93	82.0	6	77;87	6	y	0.96	108.0	4	81;135	4	y	0.99	117.0	1	102;132	1	n	0.99	84.0	1	59;109	1	n	0.89	131.0	17	104;158	17	y	0.93	67.5	5	57;78	5	y	0.97	114.0	3	94;134	3	y	ENSMUSG00000045983.17	Eif4g1	chr16	protein_coding	eukaryotic translation initiation factor 4, gamma 1
known_NIR_7036	chr16	20491626;20492405	20492349;20494094	+	20491626;20493064	20492618;20494094	MXE	ENSMUST00000115463.8	known	0.34	39.5	77.0	79;0	4;150	n	0.22	18.0	62.5	36;0	5;120	n	0.33	74.5	148.0	145;4	5;291	y	0.31	60.0	132.0	119;1	13;251	n	0.26	63.0	181.5	126;0	15;348	n	0.30	38.5	89.5	77;0	6;173	n	0.25	40.5	124.0	81;0	4;244	n	0.33	51.5	104.5	102;1	1;208	n	0.28	30.5	79.5	59;2	1;158	n	0.27	52.0	138.5	104;0	17;260	n	0.30	28.5	67.0	57;0	5;129	n	0.29	47.0	113.0	94;0	3;223	n	ENSMUSG00000045983.17	Eif4g1	chr16	protein_coding	eukaryotic translation initiation factor 4, gamma 1
known_NIR_7037	chr16	20492405	20494094	+	20493064	20494094	5pMXE	ENSMUST00000151679.3	known	0.00	0	150	0	150	n	0.00	0	120	0	120	n	0.01	4	291	4	291	y	0.00	1	251	1	251	n	0.00	0	348	0	348	n	0.00	0	173	0	173	n	0.00	0	244	0	244	n	0.00	1	208	1	208	n	0.01	2	158	2	158	y	0.00	0	260	0	260	n	0.00	0	129	0	129	n	0.00	0	223	0	223	n	ENSMUSG00000045983.17	Eif4g1	chr16	protein_coding	eukaryotic translation initiation factor 4, gamma 1
known_NIR_7038	chr16	20492405;20493064	20492618;20494094	+	20492405	20494094	cassetteExon	ENSMUST00000136713.5	known	1.00	125.0	0	100;150	0	n	1.00	84.5	0	49;120	0	n	0.98	232.5	4	174;291	4	y	1.00	205.5	1	160;251	1	n	1.00	272.0	0	196;348	0	n	1.00	130.0	0	87;173	0	n	1.00	189.5	0	135;244	0	n	0.99	170.0	1	132;208	1	n	0.99	133.5	2	109;158	2	y	1.00	209.0	0	158;260	0	n	1.00	103.5	0	78;129	0	n	1.00	178.5	0	134;223	0	n	ENSMUSG00000045983.17	Eif4g1	chr16	protein_coding	eukaryotic translation initiation factor 4, gamma 1
known_NIR_7039	chr16	20494270	20494510	+	20494270	20494480	A3SS	ENSMUST00000128840.8	known	0.01	2	234	2	234	y	0.03	5	180	5	180	y	0.08	37	454	37	454	y	0.02	7	395	7	395	y	0.03	12	459	12	459	y	0.03	6	234	6	234	y	0.03	10	361	10	361	y	0.04	12	261	12	261	y	0.02	4	193	4	193	y	0.05	19	388	19	388	y	0.05	10	209	10	209	y	0.02	6	338	6	338	y	ENSMUSG00000045983.17	Eif4g1	chr16	protein_coding	eukaryotic translation initiation factor 4, gamma 1
known_NIR_7040	chr16	20500328	20500484	+	20500328	20500487	A3SS	ENSMUST00000044783.14	known	0.33	93	191	93	191	y	0.36	57	102	57	102	y	0.38	165	264	165	264	y	0.38	122	199	122	199	y	0.35	180	331	180	331	y	0.36	89	157	89	157	y	0.34	123	236	123	236	y	0.34	85	168	85	168	y	0.34	74	142	74	142	y	0.34	134	258	134	258	y	0.40	96	142	96	142	y	0.31	114	250	114	250	y	ENSMUSG00000045983.17	Eif4g1	chr16	protein_coding	eukaryotic translation initiation factor 4, gamma 1
known_NIR_7041	chr16	20502931	20503179	+	20502931	20503158	A3SS	ENSMUST00000044783.14	known	0.03	11	417	11	417	y	0.02	6	325	6	325	y	0.02	14	580	14	580	y	0.02	11	587	11	587	y	0.01	10	663	10	663	y	0.01	3	341	3	341	y	0.01	6	641	6	641	y	0.02	8	359	8	359	y	0.01	3	354	3	354	y	0.01	6	573	6	573	y	0.03	13	377	13	377	y	0.02	13	517	13	517	y	ENSMUSG00000045983.17	Eif4g1	chr16	protein_coding	eukaryotic translation initiation factor 4, gamma 1
known_NIR_7042	chr16	20526207	20526593	-	20526207	20526323	A5SS	ENSMUST00000153075.8	known	0.08	10	114	10	114	y	0.09	11	113	11	113	y	0.00	0	11	0	11	n	0.07	10	129	10	129	y	0.08	10	111	10	111	y	0.06	1	16	1	16	n	0.03	3	113	3	113	y	0.07	2	26	2	26	y	0.06	7	107	7	107	y	0.04	9	202	9	202	y	0.04	5	130	5	130	y	0.03	4	139	4	139	y	ENSMUSG00000022843.18	Clcn2	chr16	protein_coding	chloride channel, voltage-sensitive 2
known_NIR_7043	chr16	20526207	20526593	-	20526207;20526382	20526323;20526593	ES	ENSMUST00000007207.15	known	0.09	10	107.5	10	114;101	y	0.10	11	100.0	11	113;87	y	0.00	0	10.5	0	11;10	n	0.07	10	128.5	10	129;128	y	0.10	10	94.5	10	111;78	y	0.07	1	14.0	1	16;12	n	0.03	3	103.0	3	113;93	y	0.08	2	24.0	2	26;22	y	0.07	7	97.0	7	107;87	y	0.05	9	174.0	9	202;146	y	0.04	5	131.0	5	130;132	y	0.03	4	122.5	4	139;106	y	ENSMUSG00000022843.18	Clcn2	chr16	protein_coding	chloride channel, voltage-sensitive 2
known_NIR_7044	chr16	20527517	20527827	-	20527517	20527852	A5SS	ENSMUST00000007207.15	known	0.01	1	76	1	76	n	0.00	0	55	0	55	n	0.25	2	6	2	6	n	0.00	0	77	0	77	n	0.03	2	65	2	65	y	0.00	0	5	0	5	n	0.00	0	81	0	81	n	0.00	0	21	0	21	n	0.04	2	52	2	52	y	0.01	1	93	1	93	n	0.00	0	77	0	77	n	0.04	4	95	4	95	y	ENSMUSG00000022843.18	Clcn2	chr16	protein_coding	chloride channel, voltage-sensitive 2
known_NIR_7045	chr16	20528474	20528630	-	20528430	20528630	A3SS	ENSMUST00000007207.15	known	0.04	3	79	3	79	y	0.06	4	64	4	64	y	0.00	0	8	0	8	n	0.07	8	102	8	102	y	0.02	2	86	2	86	y	0.00	0	8	0	8	n	0.03	3	83	3	83	y	0.00	0	22	0	22	n	0.07	5	65	5	65	y	0.08	9	105	9	105	y	0.05	4	72	4	72	y	0.02	2	104	2	104	y	ENSMUSG00000022843.18	Clcn2	chr16	protein_coding	chloride channel, voltage-sensitive 2
known_NIR_7046	chr16	20529389	20530484	-	20529389	20530440	A5SS	ENSMUST00000007207.15	known	0.00	0	87	0	87	n	0.00	0	75	0	75	n	0.00	0	13	0	13	n	0.00	0	104	0	104	n	0.03	3	92	3	92	y	0.00	0	9	0	9	n	0.02	2	83	2	83	y	0.03	1	29	1	29	n	0.00	0	69	0	69	n	0.01	1	125	1	125	n	0.00	0	67	0	67	n	0.00	0	102	0	102	n	ENSMUSG00000022843.18	Clcn2	chr16	protein_coding	chloride channel, voltage-sensitive 2
known_NIR_7047	chr16	20537419	20537574	+	20536744	20537574	A5SS	ENSMUST00000021405.8	known	0.04	2	47	2	47	y	0.05	2	38	2	38	y	0.09	3	31	3	31	y	0.09	4	41	4	41	y	0.02	1	53	1	53	n	0.00	0	26	0	26	n	0.08	3	33	3	33	y	0.00	0	35	0	35	n	0.00	0	26	0	26	n	0.06	3	45	3	45	y	0.02	1	50	1	50	n	0.00	0	49	0	49	n	ENSMUSG00000021018.9	Polr2h	chr16	protein_coding	polymerase (RNA) II (DNA directed) polypeptide H
known_NIR_7048	chr16	20544635	20545056	-	20544832	20545056	A3SS	ENSMUST00000115437.4	known	0.15	6	33	6	33	y	0.22	11	38	11	38	y	0.24	14	45	14	45	y	0.17	6	30	6	30	y	0.22	18	63	18	63	y	0.16	9	46	9	46	y	0.11	6	50	6	50	y	0.12	6	42	6	42	y	0.12	7	49	7	49	y	0.11	8	67	8	67	y	0.16	8	43	8	43	y	0.16	10	52	10	52	y	ENSMUSG00000022847.16	Thpo	chr16	protein_coding	thrombopoietin
known_NIR_7049	chr16	20547683	20547814	-	20547596	20547814	A3SS	ENSMUST00000115437.4	known	0.02	1	57	1	57	n	0.02	1	61	1	61	n	0.00	0	100	0	100	n	0.02	1	52	1	52	n	0.02	2	97	2	97	y	0.04	2	53	2	53	y	0.02	2	92	2	92	y	0.01	1	66	1	66	n	0.00	0	65	0	65	n	0.01	1	88	1	88	n	0.00	0	58	0	58	n	0.00	0	95	0	95	n	ENSMUSG00000022847.16	Thpo	chr16	protein_coding	thrombopoietin
known_NIR_7050	chr16	20552384	20553023	+	20552384;20552886	20552757;20553023	ES	ENSMUST00000115423.8	known	0.00	0	15.5	0	14;17	n	0.00	0	12.5	0	15;10	n	0.00	0	16.0	0	10;22	n	0.00	0	12.5	0	8;17	n	0.00	0	27.5	0	29;26	n	0.00	0	15.0	0	18;12	n	0.00	0	13.0	0	10;16	n	0.00	0	13.0	0	7;19	n	0.00	0	12.5	0	12;13	n	0.00	0	24.5	0	19;30	n	0.00	0	14.0	0	17;11	n	0.15	4	23.0	4	18;28	y	ENSMUSG00000006958.15	Chrd	chr16	protein_coding	chordin
known_NIR_7051	chr16	20553523;20553712	20553612;20553867	+	20553523	20553867	cassetteExon	ENSMUST00000115423.8	known	0.16	3.0	16	4;2	16	y	0.31	5.0	11	7;3	11	y	0.37	3.5	6	4;3	6	y	0.05	1.0	20	2;0	20	n	0.10	2.0	19	2;2	19	y	0.10	1.5	13	3;0	13	n	0.14	2.5	16	4;1	16	n	0.08	1.0	11	0;2	11	n	0.20	3.0	12	4;2	12	y	0.05	1.0	19	0;2	19	n	0.11	1.5	12	2;1	12	n	0.27	3.0	8	4;2	8	y	ENSMUSG00000006958.15	Chrd	chr16	protein_coding	chordin
known_NIR_7052	chr16	20553523;20553712	20553656;20553867	+	20553523	20553867	cassetteExon	ENSMUST00000115423.8	known	0.14	2.5	16	3;2	16	y	0.19	2.5	11	2;3	11	y	0.25	2.0	6	1;3	6	n	0.00	0.0	20	0;0	20	n	0.10	2.0	19	2;2	19	y	0.00	0.0	13	0;0	13	n	0.06	1.0	16	1;1	16	n	0.12	1.5	11	1;2	11	n	0.08	1.0	12	0;2	12	n	0.07	1.5	19	1;2	19	n	0.04	0.5	12	0;1	12	n	0.30	3.5	8	5;2	8	y	ENSMUSG00000006958.15	Chrd	chr16	protein_coding	chordin
known_NIR_7053	chr16	20553523;20553719	20553612;20553867	+	20553523	20553867	cassetteExon	ENSMUST00000115423.8	known	0.20	4.0	16	4;4	16	y	0.29	4.5	11	7;2	11	y	0.33	3.0	6	4;2	6	y	0.05	1.0	20	2;0	20	n	0.12	2.5	19	2;3	19	y	0.13	2.0	13	3;1	13	n	0.18	3.5	16	4;3	16	y	0.00	0.0	11	0;0	11	n	0.23	3.5	12	4;3	12	y	0.03	0.5	19	0;1	19	n	0.11	1.5	12	2;1	12	n	0.38	5.0	8	4;6	8	y	ENSMUSG00000006958.15	Chrd	chr16	protein_coding	chordin
known_NIR_7054	chr16	20553523;20553719	20553656;20553867	+	20553523	20553867	cassetteExon	ENSMUST00000115423.8	known	0.18	3.5	16	3;4	16	y	0.15	2.0	11	2;2	11	y	0.20	1.5	6	1;2	6	n	0.00	0.0	20	0;0	20	n	0.12	2.5	19	2;3	19	y	0.04	0.5	13	0;1	13	n	0.11	2.0	16	1;3	16	n	0.04	0.5	11	1;0	11	n	0.11	1.5	12	0;3	12	n	0.05	1.0	19	1;1	19	n	0.04	0.5	12	0;1	12	n	0.41	5.5	8	5;6	8	y	ENSMUSG00000006958.15	Chrd	chr16	protein_coding	chordin
known_NIR_7055	chr16	20555192	20555659	+	20555133	20555659	A5SS	ENSMUST00000115423.8	known	0.20	6	24	6	24	y	0.05	1	21	1	21	n	0.18	3	14	3	14	y	0.09	2	20	2	20	y	0.12	4	30	4	30	y	0.13	2	13	2	13	y	0.18	6	28	6	28	y	0.08	1	12	1	12	n	0.07	2	27	2	27	y	0.05	2	37	2	37	y	0.05	1	18	1	18	n	0.00	0	17	0	17	n	ENSMUSG00000006958.15	Chrd	chr16	protein_coding	chordin
known_NIR_7056	chr16	20557566	20557861	+	20557566;20557747	20557654;20557861	ES	ENSMUST00000007171.13	known	0.00	0	22.0	0	24;20	n	0.00	0	23.0	0	25;21	n	0.00	0	17.5	0	15;20	n	0.04	1	22.0	1	21;23	n	0.02	1	39.5	1	42;37	n	0.13	2	13.5	2	14;13	y	0.00	0	29.0	0	34;24	n	0.00	0	19.5	0	19;20	n	0.10	2	19.0	2	24;14	y	0.04	1	24.0	1	23;25	n	0.00	0	19.5	0	17;22	n	0.00	0	33.5	0	32;35	n	ENSMUSG00000006958.15	Chrd	chr16	protein_coding	chordin
known_NIR_7057	chr16	21400448	21459429	+	21400448;21426971	21426918;21459429	ES	ENSMUST00000115397.8	known	0.05	1	17.5	1	17;18	n	0.07	1	13.5	1	14;13	n	0.00	0	26.5	0	24;29	n	0.09	2	20.0	2	19;21	y	0.09	2	21.0	2	18;24	y	0.34	5	9.5	5	9;10	y	0.00	0	14.5	0	13;16	n	0.00	0	18.5	0	14;23	n	0.00	0	10.5	0	9;12	n	0.00	0	31.0	0	28;34	n	0.00	0	19.5	0	16;23	n	0.00	0	17.0	0	23;11	n	ENSMUSG00000033653.19	Vps8	chr16	protein_coding	VPS8 CORVET complex subunit
known_NIR_7058	chr16	21459509	21459765	+	21459509	21462871	A3SS	ENSMUST00000115397.8	known	0.00	0	19	0	19	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.42	5	7	5	7	y	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.07	1	14	1	14	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	ENSMUSG00000033653.19	Vps8	chr16	protein_coding	VPS8 CORVET complex subunit
known_NIR_7059	chr16	21614725	21619465	+	21614725	21625721	A3SS	ENSMUST00000211443.2	known	0.89	8	1	8	1	n	1.00	4	0	4	0	n	1.00	9	0	9	0	n	1.00	14	0	14	0	n	1.00	11	0	11	0	n	1.00	11	0	11	0	n	0.86	12	2	12	2	y	0.83	5	1	5	1	n	0.38	5	8	5	8	y	0.91	21	2	21	2	y	0.65	13	7	13	7	y	0.67	10	5	10	5	y	ENSMUSG00000097290.10	1300002E11Rik	chr16	lncRNA	RIKEN cDNA 1300002E11 gene
known_NIR_7060	chr16	21614725	21619525	+	21614725	21619465	A3SS	ENSMUST00000231300.2	known	0.53	9	8	9	8	y	0.78	14	4	14	4	y	0.67	18	9	18	9	y	0.39	9	14	9	14	y	0.48	10	11	10	11	y	0.48	10	11	10	11	y	0.54	14	12	14	12	y	0.74	14	5	14	5	y	0.74	14	5	14	5	y	0.38	13	21	13	21	y	0.48	12	13	12	13	y	0.41	7	10	7	10	y	ENSMUSG00000097290.10	1300002E11Rik	chr16	lncRNA	RIKEN cDNA 1300002E11 gene
known_NIR_7061	chr16	21614725	21619525	+	21614725	21625721	A3SS	ENSMUST00000211443.2	known	0.90	9	1	9	1	n	1.00	14	0	14	0	n	1.00	18	0	18	0	n	1.00	9	0	9	0	n	1.00	10	0	10	0	n	1.00	10	0	10	0	n	0.88	14	2	14	2	y	0.93	14	1	14	1	n	0.64	14	8	14	8	y	0.87	13	2	13	2	y	0.63	12	7	12	7	y	0.58	7	5	7	5	y	ENSMUSG00000097290.10	1300002E11Rik	chr16	lncRNA	RIKEN cDNA 1300002E11 gene
known_NIR_7062	chr16	21614725	21619525	+	21614725	21627428	A3SS	ENSMUST00000209449.2	known	0.26	9	25	9	25	y	0.35	14	26	14	26	y	0.42	18	25	18	25	y	0.24	9	29	9	29	y	0.24	10	32	10	32	y	0.43	10	13	10	13	y	0.31	14	31	14	31	y	0.52	14	13	14	13	y	0.36	14	25	14	25	y	0.28	13	34	13	34	y	0.27	12	32	12	32	y	0.29	7	17	7	17	y	ENSMUSG00000097290.10	1300002E11Rik	chr16	lncRNA	RIKEN cDNA 1300002E11 gene
known_NIR_7063	chr16	21614725	21627428	+	21614725	21619465	3pMXE	ENSMUST00000231300.2	known	0.76	25	8	25	8	y	0.87	26	4	26	4	y	0.74	25	9	25	9	y	0.67	29	14	29	14	y	0.74	32	11	32	11	y	0.54	13	11	13	11	y	0.72	31	12	31	12	y	0.72	13	5	13	5	y	0.83	25	5	25	5	y	0.62	34	21	34	21	y	0.71	32	13	32	13	y	0.63	17	10	17	10	y	ENSMUSG00000097290.10	1300002E11Rik	chr16	lncRNA	RIKEN cDNA 1300002E11 gene
known_NIR_7064	chr16	21614725	21627428	+	21614725;21625869	21625721;21627428	ES	ENSMUST00000211443.2	known	0.91	25	2.5	25	1;4	n	1.00	26	0.0	26	0;0	n	0.94	25	1.5	25	0;3	n	0.95	29	1.5	29	0;3	n	0.90	32	3.5	32	0;7	n	0.96	13	0.5	13	0;1	n	0.97	31	1.0	31	2;0	n	0.96	13	0.5	13	1;0	n	0.82	25	5.5	25	8;3	y	0.86	34	5.5	34	2;9	y	0.82	32	7.0	32	7;7	y	0.72	17	6.5	17	5;8	y	ENSMUSG00000097290.10	1300002E11Rik	chr16	lncRNA	RIKEN cDNA 1300002E11 gene
known_NIR_7065	chr16	21614725;21625869	21625721;21627428	+	21614725;21621847	21619465;21627428	MXE	ENSMUST00000209728.2	known	0.24	2.5	8.0	1;4	8;8	n	0.00	0.0	2.0	0;0	4;0	n	0.17	1.5	7.5	0;3	9;6	n	0.16	1.5	8.0	0;3	14;2	n	0.30	3.5	8.0	0;7	11;5	n	0.07	0.5	7.0	0;1	11;3	n	0.10	1.0	9.5	2;0	12;7	n	0.14	0.5	3.0	1;0	5;1	n	0.52	5.5	5.0	8;3	5;5	y	0.32	5.5	11.5	2;9	21;2	y	0.50	7.0	7.0	7;7	13;1	n	0.54	6.5	5.5	5;8	10;1	n	ENSMUSG00000097290.10	1300002E11Rik	chr16	lncRNA	RIKEN cDNA 1300002E11 gene
known_NIR_7066	chr16	21619586	21624062	+	21619586	21620031	A3SS&ES	ENSMUST00000209728.2	known	0.15	2	11	2	11	y	0.00	0	14	0	14	n	0.00	0	31	0	31	n	0.00	0	21	0	21	n	0.00	0	16	0	16	n	0.00	0	12	0	12	n	0.00	0	20	0	20	n	0.00	0	16	0	16	n	0.37	7	12	7	12	y	0.09	2	20	2	20	y	0.00	0	9	0	9	n	0.05	1	21	1	21	n	ENSMUSG00000097290.10	1300002E11Rik	chr16	lncRNA	RIKEN cDNA 1300002E11 gene
known_NIR_7067	chr16	21620106	21621705	+	21620106	21621703	A3SS	ENSMUST00000181780.9	known	0.38	3	5	3	5	n	0.10	1	9	1	9	n	0.15	5	29	5	29	y	0.17	2	10	2	10	y	0.27	6	16	6	16	y	0.09	1	10	1	10	n	0.38	6	10	6	10	y	0.11	1	8	1	8	n	0.33	3	6	3	6	n	0.18	3	14	3	14	y	0.00	0	9	0	9	n	0.12	2	15	2	15	y	ENSMUSG00000097290.10	1300002E11Rik	chr16	lncRNA	RIKEN cDNA 1300002E11 gene
known_NIR_7068	chr16	21621847	21627428	+	21614725	21627428	A5SS	ENSMUST00000209449.2	known	0.24	8	25	8	25	y	0.00	0	26	0	26	n	0.19	6	25	6	25	y	0.06	2	29	2	29	y	0.14	5	32	5	32	y	0.19	3	13	3	13	y	0.18	7	31	7	31	y	0.07	1	13	1	13	n	0.17	5	25	5	25	y	0.06	2	34	2	34	y	0.03	1	32	1	32	n	0.06	1	17	1	17	n	ENSMUSG00000097290.10	1300002E11Rik	chr16	lncRNA	RIKEN cDNA 1300002E11 gene
known_NIR_7069	chr16	21621847	21627428	+	21625869	21627428	A5SS&ES	ENSMUST00000211443.2	known	0.67	8	4	8	4	y	-	-	-	-	-	-	0.67	6	3	6	3	n	0.40	2	3	2	3	n	0.42	5	7	5	7	y	0.75	3	1	3	1	n	1.00	7	0	7	0	n	1.00	1	0	1	0	n	0.62	5	3	5	3	n	0.18	2	9	2	9	y	0.12	1	7	1	7	n	0.11	1	8	1	8	n	ENSMUSG00000097290.10	1300002E11Rik	chr16	lncRNA	RIKEN cDNA 1300002E11 gene
known_NIR_7070	chr16	21756844	21766118	-	21756844;21764904	21764751;21766118	ES	ENSMUST00000023562.9	known	0.09	5	49.0	5	48;50	y	0.08	5	56.5	5	67;46	y	0.07	4	51.0	4	62;40	y	0.07	5	67.5	5	79;56	y	0.08	7	82.0	7	90;74	y	0.02	1	47.0	1	44;50	n	0.08	5	61.5	5	60;63	y	0.00	0	40.0	0	52;28	n	0.08	3	36.0	3	39;33	y	0.20	8	32.0	8	34;30	y	0.10	4	36.5	4	47;26	y	0.04	2	46.5	2	61;32	y	ENSMUSG00000022856.10	Tmem41a	chr16	protein_coding	transmembrane protein 41a
known_NIR_7071	chr16	21828492	21832874	+	21828492;21830302	21830244;21832874	ES	ENSMUST00000023561.8	known	0.00	0	19.0	0	23;15	n	0.00	0	10.5	0	10;11	n	0.05	2	36.5	2	43;30	y	0.00	0	20.0	0	29;11	n	0.05	2	35.0	2	31;39	y	0.06	1	17.0	1	17;17	n	0.00	0	22.5	0	29;16	n	0.00	0	25.5	0	27;24	n	0.11	1	8.5	1	7;10	n	0.00	0	26.0	0	27;25	n	0.00	0	20.0	0	22;18	n	0.03	1	32.5	1	30;35	n	ENSMUSG00000022855.10	Senp2	chr16	protein_coding	SUMO/sentrin specific peptidase 2
known_NIR_7072	chr16	21828492	21832874	+	21828492;21830369	21830244;21832874	ES	ENSMUST00000231724.2	known	0.00	0	12.5	0	23;2	n	0.00	0	6.0	0	10;2	n	0.08	2	22.0	2	43;1	n	0.00	0	15.0	0	29;1	n	0.11	2	16.5	2	31;2	y	0.11	1	8.5	1	17;0	n	0.00	0	16.5	0	29;4	n	0.00	0	15.0	0	27;3	n	0.14	1	6.0	1	7;5	n	0.00	0	14.5	0	27;2	n	0.00	0	12.5	0	22;3	n	0.06	1	16.0	1	30;2	n	ENSMUSG00000022855.10	Senp2	chr16	protein_coding	SUMO/sentrin specific peptidase 2
known_NIR_7073	chr16	21830369	21832874	+	21830302	21832874	A5SS	ENSMUST00000023561.8	known	0.12	2	15	2	15	y	0.15	2	11	2	11	y	0.03	1	30	1	30	n	0.08	1	11	1	11	n	0.05	2	39	2	39	y	0.00	0	17	0	17	n	0.20	4	16	4	16	y	0.11	3	24	3	24	y	0.33	5	10	5	10	y	0.07	2	25	2	25	y	0.14	3	18	3	18	y	0.05	2	35	2	35	y	ENSMUSG00000022855.10	Senp2	chr16	protein_coding	SUMO/sentrin specific peptidase 2
known_NIR_7074	chr16	22073867	22077615	-	22073867	22077736	A5SS	ENSMUST00000162413.9	known	0.17	1	5	1	5	n	-	-	-	-	-	-	0.00	0	10	0	10	n	0.15	2	11	2	11	y	0.00	0	5	0	5	n	0.20	2	8	2	8	y	0.08	1	12	1	12	n	0.15	2	11	2	11	y	0.33	3	6	3	6	n	0.12	2	14	2	14	y	0.60	3	2	3	2	n	0.00	0	8	0	8	n	ENSMUSG00000022858.17	Tra2b	chr16	protein_coding	transformer 2 beta
known_NIR_7075	chr16	22073867	22084491	-	22073867	22077615	5pMXE	ENSMUST00000159946.2	known	0.98	63	1	63	1	n	1.00	34	0	34	0	n	1.00	46	0	46	0	n	0.96	52	2	52	2	y	1.00	84	0	84	0	n	0.96	51	2	51	2	y	0.98	54	1	54	1	n	0.97	56	2	56	2	y	0.93	41	3	41	3	y	0.97	73	2	73	2	y	0.91	32	3	32	3	y	1.00	62	0	62	0	n	ENSMUSG00000022858.17	Tra2b	chr16	protein_coding	transformer 2 beta
known_NIR_7076	chr16	22073867	22084491	-	22078011	22084491	3pMXE	ENSMUST00000160579.2	known	0.94	63	4	63	4	y	0.72	34	13	34	13	y	0.79	46	12	46	12	y	0.75	52	17	52	17	y	0.82	84	19	84	19	y	0.89	51	6	51	6	y	0.73	54	20	54	20	y	0.97	56	2	56	2	y	0.91	41	4	41	4	y	0.84	73	14	73	14	y	0.86	32	5	32	5	y	0.83	62	13	62	13	y	ENSMUSG00000022858.17	Tra2b	chr16	protein_coding	transformer 2 beta
known_NIR_7077	chr16	22073867;22078011	22077615;22084491	-	22073867	22084491	cassetteExon	ENSMUST00000161286.8	known	0.04	2.5	63	1;4	63	n	0.16	6.5	34	0;13	34	n	0.12	6.0	46	0;12	46	n	0.15	9.5	52	2;17	52	y	0.10	9.5	84	0;19	84	n	0.07	4.0	51	2;6	51	y	0.16	10.5	54	1;20	54	n	0.03	2.0	56	2;2	56	y	0.08	3.5	41	3;4	41	y	0.10	8.0	73	2;14	73	y	0.11	4.0	32	3;5	32	y	0.09	6.5	62	0;13	62	n	ENSMUSG00000022858.17	Tra2b	chr16	protein_coding	transformer 2 beta
known_NIR_7078	chr16	22073867;22078011	22077736;22084491	-	22073867	22084491	cassetteExon	ENSMUST00000161286.8	known	0.07	4.5	63	5;4	63	y	0.16	6.5	34	0;13	34	n	0.19	11.0	46	10;12	46	y	0.21	14.0	52	11;17	52	y	0.12	12.0	84	5;19	84	y	0.12	7.0	51	8;6	51	y	0.23	16.0	54	12;20	54	y	0.10	6.5	56	11;2	56	y	0.11	5.0	41	6;4	41	y	0.16	14.0	73	14;14	73	y	0.10	3.5	32	2;5	32	y	0.14	10.5	62	8;13	62	y	ENSMUSG00000022858.17	Tra2b	chr16	protein_coding	transformer 2 beta
known_NIR_7079	chr16	22632706;22633634	22633558;22637131	-	22632706	22637131	cassetteExon	ENSMUST00000004576.8	known	0.01	0.5	85	1;0	85	n	0.03	2.5	91	5;0	91	n	0.16	8.0	41	8;8	41	y	0.06	6.0	92	5;7	92	y	0.05	5.5	99	4;7	99	y	0.04	1.5	36	2;1	36	n	0.06	4.5	70	4;5	70	y	0.06	2.0	31	3;1	31	n	0.06	3.0	47	4;2	47	y	0.02	1.5	98	3;0	98	n	0.02	1.5	66	1;2	66	n	0.02	1.5	66	3;0	66	n	ENSMUSG00000004462.8	Tbccd1	chr16	protein_coding	TBCC domain containing 1
known_NIR_7080	chr16	22637278	22640832	-	22637278	22644516	A5SS	ENSMUST00000232555.2	known	1.00	88	0	88	0	n	1.00	72	0	72	0	n	1.00	75	0	75	0	n	0.97	66	2	66	2	y	1.00	91	0	91	0	n	1.00	32	0	32	0	n	1.00	81	0	81	0	n	1.00	59	0	59	0	n	0.98	52	1	52	1	n	0.99	70	1	70	1	n	1.00	67	0	67	0	n	1.00	68	0	68	0	n	ENSMUSG00000004462.8	Tbccd1	chr16	protein_coding	TBCC domain containing 1
known_NIR_7081	chr16	22641639	22644516	-	22637278	22644516	A3SS	ENSMUST00000232555.2	known	1.00	39	0	39	0	n	1.00	44	0	44	0	n	1.00	46	0	46	0	n	0.96	48	2	48	2	y	1.00	84	0	84	0	n	1.00	27	0	27	0	n	1.00	59	0	59	0	n	1.00	35	0	35	0	n	0.97	34	1	34	1	n	0.98	60	1	60	1	n	1.00	41	0	41	0	n	1.00	58	0	58	0	n	ENSMUSG00000004462.8	Tbccd1	chr16	protein_coding	TBCC domain containing 1
known_NIR_7082	chr16	22641639;22642197	22642117;22644516	-	22641639	22644516	cassetteExon	ENSMUST00000004576.8	known	0.06	2.5	39	1;4	39	n	0.07	3.5	44	4;3	44	y	0.01	0.5	46	1;0	46	n	0.04	2.0	48	2;2	48	y	0.09	8.0	84	11;5	84	y	0.02	0.5	27	0;1	27	n	0.07	4.5	59	3;6	59	y	0.09	3.5	35	1;6	35	n	0.06	2.0	34	1;3	34	n	0.04	2.5	60	4;1	60	n	0.04	1.5	41	1;2	41	n	0.03	1.5	58	2;1	58	n	ENSMUSG00000004462.8	Tbccd1	chr16	protein_coding	TBCC domain containing 1
known_NIR_7083	chr16	22658000	22660479	-	22652783	22660479	A3SS	ENSMUST00000004576.8	known	0.00	0	55	0	55	n	0.00	0	53	0	53	n	0.00	0	58	0	58	n	0.00	0	90	0	90	n	0.02	2	97	2	97	y	0.00	0	38	0	38	n	0.00	0	80	0	80	n	0.00	0	58	0	58	n	0.03	2	57	2	57	y	0.00	0	68	0	68	n	0.00	0	62	0	62	n	0.00	0	73	0	73	n	ENSMUSG00000004462.8	Tbccd1	chr16	protein_coding	TBCC domain containing 1
known_NIR_7084	chr16	22660857	22675505	-	22660857	22676095	A5SS	ENSMUST00000004576.8	known	0.40	17	26	17	26	y	0.46	16	19	16	19	y	0.50	17	17	17	17	y	0.46	32	38	32	38	y	0.51	25	24	25	24	y	0.67	12	6	12	6	y	0.51	25	24	25	24	y	0.44	16	20	16	20	y	0.53	17	15	17	15	y	0.52	27	25	27	25	y	0.44	12	15	12	15	y	0.36	16	29	16	29	y	ENSMUSG00000004462.8	Tbccd1	chr16	protein_coding	TBCC domain containing 1
known_NIR_7085	chr16	22660857	22675505	-	22660857	22676245	A5SS	ENSMUST00000232075.2	known	0.77	17	5	17	5	y	1.00	16	0	16	0	n	0.94	17	1	17	1	n	0.97	32	1	32	1	n	1.00	25	0	25	0	n	0.86	12	2	12	2	y	1.00	25	0	25	0	n	0.89	16	2	16	2	y	1.00	17	0	17	0	n	0.90	27	3	27	3	y	0.86	12	2	12	2	y	1.00	16	0	16	0	n	ENSMUSG00000004462.8	Tbccd1	chr16	protein_coding	TBCC domain containing 1
known_NIR_7086	chr16	22660857	22676245	-	22660857	22676095	A5SS	ENSMUST00000004576.8	known	0.16	5	26	5	26	y	0.00	0	19	0	19	n	0.06	1	17	1	17	n	0.03	1	38	1	38	n	0.00	0	24	0	24	n	0.25	2	6	2	6	n	0.00	0	24	0	24	n	0.09	2	20	2	20	y	0.00	0	15	0	15	n	0.11	3	25	3	25	y	0.12	2	15	2	15	y	0.00	0	29	0	29	n	ENSMUSG00000004462.8	Tbccd1	chr16	protein_coding	TBCC domain containing 1
known_NIR_7087	chr16	22690513	22697153	+	22690513	22690890	3pMXE	ENSMUST00000178320.2	known	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	18	0	18	n	0.00	0	20	0	20	n	0.00	0	9	0	9	n	0.50	13	13	13	13	y	0.00	0	12	0	12	n	0.00	0	14	0	14	n	ENSMUSG00000004460.18	Dnajb11	chr16	protein_coding	DnaJ heat shock protein family (Hsp40) member B11
known_NIR_7088	chr16	22710928	22713075	+	22710240	22713075	A5SS	ENSMUST00000231328.2	known	1.00	32	0	32	0	n	1.00	38	0	38	0	n	1.00	35	0	35	0	n	1.00	27	0	27	0	n	1.00	63	0	63	0	n	1.00	24	0	24	0	n	1.00	30	0	30	0	n	1.00	46	0	46	0	n	1.00	34	0	34	0	n	1.00	53	0	53	0	n	1.00	37	0	37	0	n	0.76	42	13	42	13	y	ENSMUSG00000022868.7	Ahsg	chr16	protein_coding	alpha-2-HS-glycoprotein
known_NIR_7089	chr16	22710928	22713075	+	22711077	22713075	A5SS	ENSMUST00000023583.7	known	0.00	32	28932	32	28932	y	0.00	38	25265	38	25265	y	0.00	35	29560	35	29560	y	0.00	27	34499	27	34499	y	0.00	63	50353	63	50353	y	0.00	24	19734	24	19734	y	0.00	30	33838	30	33838	y	0.00	46	24095	46	24095	y	0.00	34	25418	34	25418	y	0.00	53	32098	53	32098	y	0.00	37	27109	37	27109	y	0.00	42	39134	42	39134	y	ENSMUSG00000022868.7	Ahsg	chr16	protein_coding	alpha-2-HS-glycoprotein
known_NIR_7090	chr16	22711077	22713075	+	22710240	22713075	A5SS	ENSMUST00000231328.2	known	1.00	28932	0	28932	0	n	1.00	25265	0	25265	0	n	1.00	29560	0	29560	0	n	1.00	34499	0	34499	0	n	1.00	50353	0	50353	0	n	1.00	19734	0	19734	0	n	1.00	33838	0	33838	0	n	1.00	24095	0	24095	0	n	1.00	25418	0	25418	0	n	1.00	32098	0	32098	0	n	1.00	27109	0	27109	0	n	1.00	39134	13	39134	13	y	ENSMUSG00000022868.7	Ahsg	chr16	protein_coding	alpha-2-HS-glycoprotein
known_NIR_7091	chr16	22711299	22713075	+	22710240	22713075	A5SS	ENSMUST00000231328.2	known	1.00	2	0	2	0	n	-	-	-	-	-	-	1.00	2	0	2	0	n	1.00	3	0	3	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	n	-	-	-	-	-	-	1.00	4	0	4	0	n	1.00	4	0	4	0	n	0.19	3	13	3	13	y	ENSMUSG00000022868.7	Ahsg	chr16	protein_coding	alpha-2-HS-glycoprotein
known_NIR_7092	chr16	22711299	22713075	+	22710928	22713075	A5SS	ENSMUST00000232098.2	known	0.06	2	32	2	32	y	0.00	0	38	0	38	n	0.05	2	35	2	35	y	0.10	3	27	3	27	y	0.00	0	63	0	63	n	0.04	1	24	1	24	n	0.00	0	30	0	30	n	0.06	3	46	3	46	y	0.00	0	34	0	34	n	0.07	4	53	4	53	y	0.10	4	37	4	37	y	0.07	3	42	3	42	y	ENSMUSG00000022868.7	Ahsg	chr16	protein_coding	alpha-2-HS-glycoprotein
known_NIR_7093	chr16	22711299	22713075	+	22711077	22713075	A5SS	ENSMUST00000023583.7	known	0.00	2	28932	2	28932	y	0.00	0	25265	0	25265	n	0.00	2	29560	2	29560	y	0.00	3	34499	3	34499	y	0.00	0	50353	0	50353	n	0.00	1	19734	1	19734	n	0.00	0	33838	0	33838	n	0.00	3	24095	3	24095	y	0.00	0	25418	0	25418	n	0.00	4	32098	4	32098	y	0.00	4	27109	4	27109	y	0.00	3	39134	3	39134	y	ENSMUSG00000022868.7	Ahsg	chr16	protein_coding	alpha-2-HS-glycoprotein
known_NIR_7094	chr16	22713185	22713944	+	22713185;22713629	22713545;22713944	ES	ENSMUST00000231848.2	known	0.00	75	31066.5	75	27813;34320	y	0.00	77	28442.5	77	25453;31432	y	0.00	119	30721.5	119	27839;33604	y	0.00	54	35384.5	54	32428;38341	y	0.00	116	54379.5	116	49873;58886	y	0.00	44	21978.5	44	19499;24458	y	0.00	80	37556.5	80	33311;41802	y	0.00	66	26304.5	66	23507;29102	y	0.00	50	28042.5	50	25048;31037	y	0.00	80	35640.0	80	31805;39475	y	0.00	64	30261.0	64	26970;33552	y	0.00	88	42211.5	88	38202;46221	y	ENSMUSG00000022868.7	Ahsg	chr16	protein_coding	alpha-2-HS-glycoprotein
known_NIR_7095	chr16	22713185	22713944	+	22713629	22713944	5pMXE	ENSMUST00000232674.2	known	0.00	75	34320	75	34320	y	0.00	77	31432	77	31432	y	0.00	119	33604	119	33604	y	0.00	54	38341	54	38341	y	0.00	116	58886	116	58886	y	0.00	44	24458	44	24458	y	0.00	80	41802	80	41802	y	0.00	66	29102	66	29102	y	0.00	50	31037	50	31037	y	0.00	80	39475	80	39475	y	0.00	64	33552	64	33552	y	0.00	88	46221	88	46221	y	ENSMUSG00000022868.7	Ahsg	chr16	protein_coding	alpha-2-HS-glycoprotein
known_NIR_7096	chr16	22715359	22717917	+	22715359	22716878	A3SS&ES	ENSMUST00000231848.2	known	0.02	847	34911	847	34911	y	0.03	973	32954	973	32954	y	0.02	750	31694	750	31694	y	0.02	698	34972	698	34972	y	0.03	1534	55520	1534	55520	y	0.03	644	21727	644	21727	y	0.03	1136	40536	1136	40536	y	0.03	694	25075	694	25075	y	0.02	735	29028	735	29028	y	0.03	1002	36279	1002	36279	y	0.03	1025	32053	1025	32053	y	0.02	1044	42372	1044	42372	y	ENSMUSG00000022868.7	Ahsg	chr16	protein_coding	alpha-2-HS-glycoprotein
known_NIR_7097	chr16	22737340	22747825	+	22737344	22747825	A5SS	ENSMUST00000231768.2	known	0.64	7	4	7	4	y	0.88	7	1	7	1	n	0.90	18	2	18	2	y	0.55	6	5	6	5	y	0.81	13	3	13	3	y	0.87	13	2	13	2	y	0.71	5	2	5	2	n	0.82	14	3	14	3	y	0.73	11	4	11	4	y	0.79	11	3	11	3	y	0.70	7	3	7	3	y	0.56	5	4	5	4	n	ENSMUSG00000022871.14	Fetub	chr16	protein_coding	fetuin beta
known_NIR_7098	chr16	22739245	22740499	+	22739245	22748383	A3SS	ENSMUST00000116625.10	known	0.06	14	206	14	206	y	0.18	35	155	35	155	y	0.14	15	91	15	91	y	0.05	13	244	13	244	y	0.11	27	222	27	222	y	0.13	9	62	9	62	y	0.19	34	147	34	147	y	0.15	13	76	13	76	y	0.16	25	127	25	127	y	0.13	33	221	33	221	y	0.16	26	138	26	138	y	0.14	36	228	36	228	y	ENSMUSG00000022871.14	Fetub	chr16	protein_coding	fetuin beta
known_NIR_7099	chr16	22739245	22747825	+	22737340	22747825	A5SS	ENSMUST00000170805.9	known	0.99	667	7	667	7	y	0.99	560	7	560	7	y	0.98	839	18	839	18	y	0.99	733	6	733	6	y	0.99	923	13	923	13	y	0.97	446	13	446	13	y	0.99	747	5	747	5	y	0.98	559	14	559	14	y	0.99	767	11	767	11	y	0.99	1022	11	1022	11	y	0.99	737	7	737	7	y	0.99	971	5	971	5	y	ENSMUSG00000022871.14	Fetub	chr16	protein_coding	fetuin beta
known_NIR_7100	chr16	22739245	22747825	+	22737344	22747825	A5SS	ENSMUST00000231768.2	known	0.99	667	4	667	4	y	1.00	560	1	560	1	n	1.00	839	2	839	2	y	0.99	733	5	733	5	y	1.00	923	3	923	3	y	1.00	446	2	446	2	y	1.00	747	2	747	2	y	0.99	559	3	559	3	y	0.99	767	4	767	4	y	1.00	1022	3	1022	3	y	1.00	737	3	737	3	y	1.00	971	4	971	4	y	ENSMUSG00000022871.14	Fetub	chr16	protein_coding	fetuin beta
known_NIR_7101	chr16	22739245	22747825	+	22740625	22747825	5pMXE	ENSMUST00000167399.2	known	0.93	667	49	667	49	y	0.90	560	60	560	60	y	0.94	839	57	839	57	y	0.94	733	48	733	48	y	0.95	923	49	923	49	y	0.93	446	32	446	32	y	0.92	747	65	747	65	y	0.93	559	43	559	43	y	0.93	767	56	767	56	y	0.93	1022	75	1022	75	y	0.94	737	44	737	44	y	0.93	971	74	971	74	y	ENSMUSG00000022871.14	Fetub	chr16	protein_coding	fetuin beta
known_NIR_7102	chr16	22739245	22748383	+	22739245;22748059	22747825;22748383	ES	ENSMUST00000023587.12	known	0.15	206	1132.5	206	667;1598	y	0.13	155	1073.5	155	560;1587	y	0.05	91	1732.0	91	839;2625	y	0.15	244	1330.5	244	733;1928	y	0.11	222	1741.0	222	923;2559	y	0.06	62	967.5	62	446;1489	y	0.09	147	1483.0	147	747;2219	y	0.06	76	1104.5	76	559;1650	y	0.09	127	1249.0	127	767;1731	y	0.11	221	1788.5	221	1022;2555	y	0.10	138	1258.5	138	737;1780	y	0.12	228	1691.0	228	971;2411	y	ENSMUSG00000022871.14	Fetub	chr16	protein_coding	fetuin beta
known_NIR_7103	chr16	22739245	22748383	+	22748059	22748383	A5SS&ES	ENSMUST00000231768.2	known	0.11	206	1598	206	1598	y	0.09	155	1587	155	1587	y	0.03	91	2625	91	2625	y	0.11	244	1928	244	1928	y	0.08	222	2559	222	2559	y	0.04	62	1489	62	1489	y	0.06	147	2219	147	2219	y	0.04	76	1650	76	1650	y	0.07	127	1731	127	1731	y	0.08	221	2555	221	2555	y	0.07	138	1780	138	1780	y	0.09	228	2411	228	2411	y	ENSMUSG00000022871.14	Fetub	chr16	protein_coding	fetuin beta
known_NIR_7104	chr16	22739245;22740625	22740499;22747825	+	22739245	22747825	cassetteExon	ENSMUST00000023587.12	known	0.05	31.5	667	14;49	667	y	0.08	47.5	560	35;60	560	y	0.04	36.0	839	15;57	839	y	0.04	30.5	733	13;48	733	y	0.04	38.0	923	27;49	923	y	0.04	20.5	446	9;32	446	y	0.06	49.5	747	34;65	747	y	0.05	28.0	559	13;43	559	y	0.05	40.5	767	25;56	767	y	0.05	54.0	1022	33;75	1022	y	0.05	35.0	737	26;44	737	y	0.05	55.0	971	36;74	971	y	ENSMUSG00000022871.14	Fetub	chr16	protein_coding	fetuin beta
known_NIR_7105	chr16	22740625	22747825	+	22737340	22747825	A5SS	ENSMUST00000170805.9	known	0.88	49	7	49	7	y	0.90	60	7	60	7	y	0.76	57	18	57	18	y	0.89	48	6	48	6	y	0.79	49	13	49	13	y	0.71	32	13	32	13	y	0.93	65	5	65	5	y	0.75	43	14	43	14	y	0.84	56	11	56	11	y	0.87	75	11	75	11	y	0.86	44	7	44	7	y	0.94	74	5	74	5	y	ENSMUSG00000022871.14	Fetub	chr16	protein_coding	fetuin beta
known_NIR_7106	chr16	22740625	22747825	+	22737344	22747825	A5SS	ENSMUST00000231768.2	known	0.92	49	4	49	4	y	0.98	60	1	60	1	n	0.97	57	2	57	2	y	0.91	48	5	48	5	y	0.94	49	3	49	3	y	0.94	32	2	32	2	y	0.97	65	2	65	2	y	0.93	43	3	43	3	y	0.93	56	4	56	4	y	0.96	75	3	75	3	y	0.94	44	3	44	3	y	0.95	74	4	74	4	y	ENSMUSG00000022871.14	Fetub	chr16	protein_coding	fetuin beta
known_NIR_7107	chr16	22774956	22775692	+	22774956	22776217	A3SS	ENSMUST00000023590.9	known	0.01	22	3349	22	3349	y	0.01	24	3151	24	3151	y	0.02	28	1534	28	1534	y	0.01	28	3998	28	3998	y	0.01	63	4863	63	4863	y	0.02	22	1237	22	1237	y	0.01	30	3679	30	3679	y	0.01	20	1929	20	1929	y	0.01	17	3218	17	3218	y	0.01	30	4177	30	4177	y	0.01	32	3528	32	3528	y	0.01	33	4406	33	4406	y	ENSMUSG00000022877.10	Hrg	chr16	protein_coding	histidine-rich glycoprotein
known_NIR_7108	chr16	22806375	22806995	-	22804818	22806995	A3SS	ENSMUST00000115349.9	known	0.03	76	2196	76	2196	y	0.03	89	2809	89	2809	y	0.02	70	2959	70	2959	y	0.03	60	1714	60	1714	y	0.03	91	2942	91	2942	y	0.03	43	1618	43	1618	y	0.03	81	2509	81	2509	y	0.03	58	1654	58	1654	y	0.04	64	1650	64	1650	y	0.04	99	2346	99	2346	y	0.03	70	2173	70	2173	y	0.03	86	2799	86	2799	y	ENSMUSG00000060459.15	Kng2	chr16	protein_coding	kininogen 2
known_NIR_7109	chr16	22815859	22818564	-	22815859;22816068	22815961;22818564	ES	ENSMUST00000115349.9	known	0.00	11	2318.5	11	2577;2060	y	0.00	7	2605.0	7	2981;2229	y	0.01	16	3147.5	16	3510;2785	y	0.00	4	2076.5	4	2303;1850	y	0.00	9	3223.0	9	3492;2954	y	0.00	4	1745.0	4	1929;1561	y	0.00	12	2668.5	12	3044;2293	y	0.00	6	1815.0	6	2014;1616	y	0.00	5	1888.5	5	2129;1648	y	0.00	8	2670.0	8	3014;2326	y	0.00	8	2131.5	8	2363;1900	y	0.00	8	3071.5	8	3442;2701	y	ENSMUSG00000060459.15	Kng2	chr16	protein_coding	kininogen 2
known_NIR_7110	chr16	22822789	22830797	-	22822789	22830747	A5SS	ENSMUST00000115349.9	known	0.02	24	1352	24	1352	y	0.01	12	1354	12	1354	y	0.02	37	2106	37	2106	y	0.01	16	1376	16	1376	y	0.02	41	2034	41	2034	y	0.02	23	1162	23	1162	y	0.02	31	1554	31	1554	y	0.02	23	1213	23	1213	y	0.02	28	1154	28	1154	y	0.02	33	1765	33	1765	y	0.01	16	1242	16	1242	y	0.02	41	1889	41	1889	y	ENSMUSG00000060459.15	Kng2	chr16	protein_coding	kininogen 2
known_NIR_7111	chr16	22843671;22845466	22845372;22845798	-	22843671	22845798	cassetteExon	ENSMUST00000115349.9	known	0.03	25.0	928	24;26	928	y	0.04	38.0	831	32;44	831	y	0.06	100.5	1514	97;104	1514	y	0.04	43.0	961	42;44	961	y	0.04	67.0	1434	53;81	1434	y	0.07	59.5	776	53;66	776	y	0.05	53.0	1013	53;53	1013	y	0.07	63.0	900	57;69	900	y	0.05	45.0	784	36;54	784	y	0.05	60.5	1119	61;60	1119	y	0.03	26.0	734	24;28	734	y	0.05	71.0	1341	64;78	1341	y	ENSMUSG00000060459.15	Kng2	chr16	protein_coding	kininogen 2
known_NIR_7112	chr16	22897801	22898345	+	22897801	22900228	A3SS	ENSMUST00000039492.14	known	0.05	751	13699	751	13699	y	0.05	899	18477	899	18477	y	0.04	556	13501	556	13501	y	0.05	657	12556	657	12556	y	0.05	1048	19686	1048	19686	y	0.05	426	8415	426	8415	y	0.05	786	15039	786	15039	y	0.05	500	10110	500	10110	y	0.06	730	11790	730	11790	y	0.06	993	15909	993	15909	y	0.05	855	15008	855	15008	y	0.05	964	16713	964	16713	y	ENSMUSG00000022875.19	Kng1	chr16	protein_coding	kininogen 1
known_NIR_7113	chr16	22926570	22927335	+	22926570	22927338	A3SS	ENSMUST00000023599.13	known	0.26	42	118	42	118	y	0.28	37	94	37	94	y	0.34	47	93	47	93	y	0.21	50	188	50	188	y	0.31	77	170	77	170	y	0.29	28	70	28	70	y	0.24	66	206	66	206	y	0.18	17	76	17	76	y	0.26	52	151	52	151	y	0.21	59	216	59	216	y	0.24	50	160	50	160	y	0.25	72	217	72	217	y	ENSMUSG00000022884.17	Eif4a2	chr16	protein_coding	eukaryotic translation initiation factor 4A2
known_NIR_7114	chr16	22926630	22927338	+	22926570	22927338	A5SS	ENSMUST00000023599.13	known	0.04	5	118	5	118	y	0.02	2	94	2	94	y	0.00	0	93	0	93	n	0.01	2	188	2	188	y	0.00	0	170	0	170	n	0.00	0	70	0	70	n	0.00	0	206	0	206	n	0.01	1	76	1	76	n	0.00	0	151	0	151	n	0.01	3	216	3	216	y	0.00	0	160	0	160	n	0.00	0	217	0	217	n	ENSMUSG00000022884.17	Eif4a2	chr16	protein_coding	eukaryotic translation initiation factor 4A2
known_NIR_7115	chr16	22927601	22928735	+	22927601	22927870	3pMXE	ENSMUST00000130775.8	known	0.09	32	309	32	309	y	0.16	37	193	37	193	y	0.21	48	178	48	178	y	0.07	29	396	29	396	y	0.09	39	391	39	391	y	0.16	24	125	24	125	y	0.09	39	398	39	398	y	0.14	21	134	21	134	y	0.10	39	359	39	359	y	0.10	53	466	53	466	y	0.08	32	352	32	352	y	0.07	33	462	33	462	y	ENSMUSG00000022884.17	Eif4a2	chr16	protein_coding	eukaryotic translation initiation factor 4A2
known_NIR_7116	chr16	22927601	22928735	+	22927601;22928009	22927870;22928735	ES	ENSMUST00000023599.13	known	0.09	32	337.5	32	309;366	y	0.14	37	235.5	37	193;278	y	0.18	48	222.0	48	178;266	y	0.06	29	479.5	29	396;563	y	0.08	39	449.5	39	391;508	y	0.15	24	141.5	24	125;158	y	0.08	39	465.5	39	398;533	y	0.12	21	161.5	21	134;189	y	0.08	39	453.0	39	359;547	y	0.08	53	582.0	53	466;698	y	0.07	32	419.0	32	352;486	y	0.06	33	542.0	33	462;622	y	ENSMUSG00000022884.17	Eif4a2	chr16	protein_coding	eukaryotic translation initiation factor 4A2
known_NIR_7117	chr16	22927601	22928735	+	22928009	22928735	5pMXE	ENSMUST00000125553.2	known	0.08	32	366	32	366	y	0.12	37	278	37	278	y	0.15	48	266	48	266	y	0.05	29	563	29	563	y	0.07	39	508	39	508	y	0.13	24	158	24	158	y	0.07	39	533	39	533	y	0.10	21	189	21	189	y	0.07	39	547	39	547	y	0.07	53	698	53	698	y	0.06	32	486	32	486	y	0.05	33	622	33	622	y	ENSMUSG00000022884.17	Eif4a2	chr16	protein_coding	eukaryotic translation initiation factor 4A2
known_NIR_7118	chr16	22930646	22931917	+	22930646	22931101	A3SS	ENSMUST00000077605.12	known	0.82	431	92	431	92	y	0.83	379	78	379	78	y	0.57	191	146	191	146	y	0.86	498	84	498	84	y	0.79	379	103	379	103	y	0.70	128	56	128	56	y	0.86	641	101	641	101	y	0.75	131	43	131	43	y	0.86	437	74	437	74	y	0.85	666	120	666	120	y	0.84	524	98	524	98	y	0.82	616	131	616	131	y	ENSMUSG00000022884.17	Eif4a2	chr16	protein_coding	eukaryotic translation initiation factor 4A2
known_NIR_7119	chr16	22930646;22931207	22931101;22931917	+	22930646	22931917	cassetteExon	ENSMUST00000023599.13	known	0.12	59.5	431	92;27	431	y	0.12	52.0	379	78;26	379	y	0.33	95.5	191	146;45	191	y	0.10	57.5	498	84;31	498	y	0.14	64.0	379	103;25	379	y	0.20	32.5	128	56;9	128	y	0.10	68.0	641	101;35	641	y	0.19	31.0	131	43;19	131	y	0.10	51.0	437	74;28	437	y	0.11	78.5	666	120;37	666	y	0.10	58.5	524	98;19	524	y	0.11	79.0	616	131;27	616	y	ENSMUSG00000022884.17	Eif4a2	chr16	protein_coding	eukaryotic translation initiation factor 4A2
known_NIR_7120	chr16	23011792	23012249	+	23011893	23012249	A5SS	ENSMUST00000232174.2	known	0.19	23	101	23	101	y	0.20	26	104	26	104	y	0.14	1	6	1	6	n	0.16	23	125	23	125	y	0.20	22	90	22	90	y	0.00	0	5	0	5	n	0.13	18	123	18	123	y	0.26	5	14	5	14	y	0.12	16	117	16	117	y	0.15	31	171	31	171	y	0.16	25	131	25	131	y	0.17	26	125	26	125	y	ENSMUSG00000068463.5	B630019A10Rik	chr16	lncRNA	RIKEN cDNA B630019A10 gene
known_NIR_7121	chr16	23012317	23022241	+	23012317	23019736	A3SS	ENSMUST00000232062.2	known	0.29	24	59	24	59	y	0.33	26	53	26	53	y	0.40	2	3	2	3	n	0.25	25	74	25	74	y	0.33	19	38	19	38	y	0.00	0	1	0	1	n	0.24	22	71	22	71	y	0.17	1	5	1	5	n	0.10	6	54	6	54	y	0.25	37	109	37	109	y	0.33	28	56	28	56	y	0.28	29	73	29	73	y	ENSMUSG00000068463.5	B630019A10Rik	chr16	lncRNA	RIKEN cDNA B630019A10 gene
known_NIR_7122	chr16	23012317;23019964	23019736;23022241	+	23012317	23022241	cassetteExon	ENSMUST00000232204.2	known	0.69	53.5	24	59;48	24	y	0.64	47.0	26	53;41	26	y	0.56	2.5	2	3;2	2	n	0.74	72.0	25	74;70	25	y	0.66	37.0	19	38;36	19	y	1.00	1.5	0	1;2	0	n	0.73	60.0	22	71;49	22	y	0.83	5.0	1	5;5	1	n	0.90	53.5	6	54;53	6	y	0.72	97.5	37	109;86	37	y	0.70	66.5	28	56;77	28	y	0.71	72.0	29	73;71	29	y	ENSMUSG00000068463.5	B630019A10Rik	chr16	lncRNA	RIKEN cDNA B630019A10 gene
known_NIR_7123	chr16	23044929	23075709	+	23043979	23075709	A5SS	ENSMUST00000023601.14	known	0.18	2	9	2	9	y	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.00	0	15	0	15	n	0.16	4	21	4	21	y	0.20	2	8	2	8	y	0.13	2	13	2	13	y	0.00	0	10	0	10	n	0.17	1	5	1	5	n	0.29	5	12	5	12	y	0.17	1	5	1	5	n	0.00	0	11	0	11	n	ENSMUSG00000022885.17	St6gal1	chr16	protein_coding	beta galactoside alpha 2,6 sialyltransferase 1
known_NIR_7124	chr16	23109388	23136314	+	23075851	23136314	A5SS	ENSMUST00000023601.14	known	0.67	46	23	46	23	y	0.88	68	9	68	9	y	0.97	675	20	675	20	y	0.78	57	16	57	16	y	0.86	190	32	190	32	y	0.95	278	14	278	14	y	0.81	110	25	110	25	y	0.94	346	22	346	22	y	0.71	42	17	42	17	y	0.68	71	34	71	34	y	0.67	36	18	36	18	y	0.81	97	23	97	23	y	ENSMUSG00000022885.17	St6gal1	chr16	protein_coding	beta galactoside alpha 2,6 sialyltransferase 1
known_NIR_7125	chr16	23289480	23293624	-	23283915	23293624	A3SS	ENSMUST00000089883.7	known	0.26	24	68	24	68	y	0.28	24	62	24	62	y	0.31	42	94	42	94	y	0.19	27	117	27	117	y	0.19	33	138	33	138	y	0.36	30	53	30	53	y	0.17	20	95	20	95	y	0.28	21	55	21	55	y	0.17	18	85	18	85	y	0.22	38	133	38	133	y	0.22	20	71	20	71	y	0.25	40	122	40	122	y	ENSMUSG00000022887.10	Masp1	chr16	protein_coding	mannan-binding lectin serine peptidase 1
known_NIR_7126	chr16	23298890	23302145	-	23295154	23302145	A3SS	ENSMUST00000089883.7	known	0.05	6	126	6	126	y	0.05	5	93	5	93	y	0.04	7	190	7	190	y	0.04	7	170	7	170	y	0.01	3	239	3	239	y	0.02	3	138	3	138	y	0.03	4	144	4	144	y	0.02	3	154	3	154	y	0.02	2	129	2	129	y	0.02	4	185	4	185	y	0.03	4	132	4	132	y	0.02	4	182	4	182	y	ENSMUSG00000022887.10	Masp1	chr16	protein_coding	mannan-binding lectin serine peptidase 1
known_NIR_7127	chr16	23339224	23346245	+	23339224;23340968	23340437;23346245	ES	ENSMUST00000211499.2	known	0.77	20	6.0	20	10;2	y	0.88	23	3.0	23	5;1	n	0.79	21	5.5	21	7;4	y	0.84	29	5.5	29	9;2	y	0.80	35	9.0	35	9;9	y	0.53	12	10.5	12	12;9	y	0.74	28	10.0	28	12;8	y	0.75	12	4.0	12	7;1	n	0.82	16	3.5	16	4;3	y	0.61	17	11.0	17	10;12	y	0.84	27	5.0	27	7;3	y	0.76	19	6.0	19	8;4	y	ENSMUSG00000109783.2	Gm45338	chr16	lncRNA	predicted gene 45338
known_NIR_7128	chr16	23339224;23340703	23340437;23346245	+	23339224	23346245	cassetteExon	ENSMUST00000211460.2	known	0.32	9.5	20	10;9	20	y	0.18	5.0	23	5;5	23	y	0.19	5.0	21	7;3	21	y	0.25	9.5	29	9;10	29	y	0.26	12.0	35	9;15	35	y	0.47	10.5	12	12;9	12	y	0.31	12.5	28	12;13	28	y	0.44	9.5	12	7;12	12	y	0.27	6.0	16	4;8	16	y	0.36	9.5	17	10;9	17	y	0.19	6.5	27	7;6	27	y	0.30	8.0	19	8;8	19	y	ENSMUSG00000109783.2	Gm45338	chr16	lncRNA	predicted gene 45338
known_NIR_7129	chr16	23340968	23346245	+	23339224	23346245	A5SS	ENSMUST00000211460.2	known	0.09	2	20	2	20	y	0.04	1	23	1	23	n	0.16	4	21	4	21	y	0.06	2	29	2	29	y	0.20	9	35	9	35	y	0.43	9	12	9	12	y	0.22	8	28	8	28	y	0.08	1	12	1	12	n	0.16	3	16	3	16	y	0.41	12	17	12	17	y	0.10	3	27	3	27	y	0.17	4	19	4	19	y	ENSMUSG00000109783.2	Gm45338	chr16	lncRNA	predicted gene 45338
known_NIR_7130	chr16	23340968	23346245	+	23340703	23346245	A5SS	ENSMUST00000210658.2	known	0.18	2	9	2	9	y	0.17	1	5	1	5	n	0.57	4	3	4	3	n	0.17	2	10	2	10	y	0.38	9	15	9	15	y	0.50	9	9	9	9	y	0.38	8	13	8	13	y	0.08	1	12	1	12	n	0.27	3	8	3	8	y	0.57	12	9	12	9	y	0.33	3	6	3	6	n	0.33	4	8	4	8	y	ENSMUSG00000109783.2	Gm45338	chr16	lncRNA	predicted gene 45338
known_NIR_7131	chr16	23346356	23373448	+	23346356	23353330	3pMXE	ENSMUST00000210658.2	known	0.00	0	36	0	36	n	0.12	6	44	6	44	y	0.06	2	32	2	32	y	0.19	8	35	8	35	y	0.06	3	51	3	51	y	0.00	0	21	0	21	n	0.08	4	45	4	45	y	0.00	0	34	0	34	n	0.09	3	32	3	32	y	0.04	2	44	2	44	y	0.21	8	31	8	31	y	0.10	4	35	4	35	y	ENSMUSG00000109783.2	Gm45338	chr16	lncRNA	predicted gene 45338
known_NIR_7132	chr16	23346356	23373448	+	23346356;23353549	23353330;23373448	ES	ENSMUST00000210371.2	known	0.00	0	20.0	0	36;4	n	0.19	6	25.0	6	44;6	y	0.09	2	20.5	2	32;9	y	0.30	8	18.5	8	35;2	y	0.08	3	32.5	3	51;14	y	0.00	0	12.0	0	21;3	n	0.12	4	28.0	4	45;11	y	0.00	0	19.0	0	34;4	n	0.12	3	21.0	3	32;10	y	0.07	2	25.0	2	44;6	y	0.30	8	19.0	8	31;7	y	0.16	4	21.0	4	35;7	y	ENSMUSG00000109783.2	Gm45338	chr16	lncRNA	predicted gene 45338
known_NIR_7133	chr16	23346356	23428679	+	23346356	23353330	3pMXE	ENSMUST00000210658.2	known	0.03	1	36	1	36	n	0.02	1	44	1	44	n	0.00	0	32	0	32	n	0.00	0	35	0	35	n	0.07	4	51	4	51	y	0.00	0	21	0	21	n	0.02	1	45	1	45	n	0.00	0	34	0	34	n	0.03	1	32	1	32	n	0.12	6	44	6	44	y	0.03	1	31	1	31	n	0.00	0	35	0	35	n	ENSMUSG00000109783.2	Gm45338	chr16	lncRNA	predicted gene 45338
known_NIR_7134	chr16	23346356;23373683	23373448;23378522	+	23346356;23362621	23353330;23378522	MXE	ENSMUST00000211460.2	known	0.38	11.0	18.0	0;22	36;0	n	0.41	16.0	23.0	6;26	44;2	y	0.27	6.0	16.0	2;10	32;0	n	0.47	15.5	17.5	8;23	35;0	n	0.40	17.0	25.5	3;31	51;0	n	0.28	4.0	10.5	0;8	21;0	n	0.41	15.5	22.5	4;27	45;0	n	0.38	10.5	17.0	0;21	34;0	n	0.52	17.5	16.0	3;32	32;0	n	0.43	16.5	22.0	2;31	44;0	n	0.54	19.0	16.0	8;30	31;1	n	0.44	14.0	17.5	4;24	35;0	n	ENSMUSG00000109783.2	Gm45338	chr16	lncRNA	predicted gene 45338
known_NIR_7135	chr16	23353549	23373448	+	23353549	23362373	3pMXE	ENSMUST00000211499.2	known	1.00	4	0	4	0	n	1.00	6	0	6	0	n	0.82	9	2	9	2	y	1.00	2	0	2	0	n	0.88	14	2	14	2	y	1.00	3	0	3	0	n	1.00	11	0	11	0	n	1.00	4	0	4	0	n	1.00	10	0	10	0	n	1.00	6	0	6	0	n	1.00	7	0	7	0	n	0.88	7	1	7	1	n	ENSMUSG00000109783.2	Gm45338	chr16	lncRNA	predicted gene 45338
known_NIR_7136	chr16	23362621	23378522	+	23373683	23378522	A5SS&ES	ENSMUST00000210795.2	known	0.00	0	22	0	22	n	0.07	2	26	2	26	y	0.00	0	10	0	10	n	0.00	0	23	0	23	n	0.00	0	31	0	31	n	0.00	0	8	0	8	n	0.00	0	27	0	27	n	0.00	0	21	0	21	n	0.00	0	32	0	32	n	0.00	0	31	0	31	n	0.03	1	30	1	30	n	0.00	0	24	0	24	n	ENSMUSG00000109783.2	Gm45338	chr16	lncRNA	predicted gene 45338
known_NIR_7137	chr16	23421285	23428679	+	23346356	23428679	A5SS	ENSMUST00000209422.2	known	0.92	12	1	12	1	n	0.89	8	1	8	1	n	-	-	-	-	-	-	1.00	8	0	8	0	n	0.80	16	4	16	4	y	1.00	2	0	2	0	n	0.93	13	1	13	1	n	1.00	5	0	5	0	n	0.90	9	1	9	1	n	0.67	12	6	12	6	y	0.89	8	1	8	1	n	1.00	6	0	6	0	n	ENSMUSG00000033355.7	Rtp4	chr16	protein_coding	receptor transporter protein 4
known_NIR_7138	chr16	23427887	23428679	+	23421285	23428679	A5SS	ENSMUST00000211569.2	known	0.00	0	12	0	12	n	0.11	1	8	1	8	n	1.00	5	0	5	0	n	0.27	3	8	3	8	y	0.11	2	16	2	16	y	0.60	3	2	3	2	n	0.13	2	13	2	13	y	0.29	2	5	2	5	n	0.00	0	9	0	9	n	0.14	2	12	2	12	y	0.00	0	8	0	8	n	0.00	0	6	0	6	n	ENSMUSG00000033355.7	Rtp4	chr16	protein_coding	receptor transporter protein 4
known_NIR_7139	chr16	23428899	23431848	+	23428899	23431631	A3SS	ENSMUST00000209422.2	known	0.09	6	63	6	63	y	0.14	8	48	8	48	y	0.09	6	60	6	60	y	0.08	5	60	5	60	y	0.09	6	62	6	62	y	0.15	3	17	3	17	y	0.05	3	57	3	57	y	0.16	4	21	4	21	y	0.00	0	37	0	37	n	0.09	6	61	6	61	y	0.11	4	33	4	33	y	0.07	4	50	4	50	y	ENSMUSG00000033355.7	Rtp4	chr16	protein_coding	receptor transporter protein 4
known_NIR_7140	chr16	26533803	26551975	-	26549011	26551975	3pMXE	ENSMUST00000173291.2	known	0.47	128	146	128	146	y	0.43	132	177	132	177	y	0.29	41	98	41	98	y	0.57	174	130	174	130	y	0.57	220	168	220	168	y	0.43	51	68	51	68	y	0.58	215	155	215	155	y	0.55	78	65	78	65	y	0.55	199	162	199	162	y	0.58	273	201	273	201	y	0.54	225	190	225	190	y	0.53	188	167	188	167	y	ENSMUSG00000092545.8	Gm20319	chr16	lncRNA	predicted gene, 20319
known_NIR_7141	chr16	26533803;26549011	26548955;26551975	-	26533803	26551975	cassetteExon	ENSMUST00000172522.8	known	0.37	75.0	128	4;146	128	y	0.40	89.0	132	1;177	132	n	0.55	49.5	41	1;98	41	n	0.28	66.5	174	3;130	174	y	0.28	85.0	220	2;168	220	y	0.40	34.0	51	0;68	51	n	0.26	77.5	215	0;155	215	n	0.30	33.5	78	2;65	78	y	0.29	81.5	199	1;162	199	n	0.27	103.0	273	5;201	273	y	0.30	96.0	225	2;190	225	y	0.31	83.5	188	0;167	188	n	ENSMUSG00000092545.8	Gm20319	chr16	lncRNA	predicted gene, 20319
known_NIR_7142	chr16	27236115	27240443	+	27236115	27254312	A3SS	ENSMUST00000100026.10	known	0.00	0	34	0	34	n	0.05	1	20	1	20	n	0.02	1	52	1	52	n	0.02	1	50	1	50	n	0.03	2	63	2	63	y	0.04	1	24	1	24	n	0.00	0	35	0	35	n	0.00	0	20	0	20	n	0.00	0	28	0	28	n	0.00	0	36	0	36	n	0.06	2	34	2	34	y	0.00	0	41	0	41	n	ENSMUSG00000038127.16	Ccdc50	chr16	protein_coding	coiled-coil domain containing 50
known_NIR_7143	chr16	27240967	27254312	+	27236115	27254312	A5SS	ENSMUST00000100026.10	known	0.15	6	34	6	34	y	0.05	1	20	1	20	n	0.00	0	52	0	52	n	0.02	1	50	1	50	n	0.02	1	63	1	63	n	0.00	0	24	0	24	n	0.05	2	35	2	35	y	0.00	0	20	0	20	n	0.03	1	28	1	28	n	0.08	3	36	3	36	y	0.00	0	34	0	34	n	0.02	1	41	1	41	n	ENSMUSG00000038127.16	Ccdc50	chr16	protein_coding	coiled-coil domain containing 50
known_NIR_7144	chr16	27254427	27255248	+	27254427;27255162	27255118;27255248	ES	ENSMUST00000239351.2	known	0.03	1	29.5	1	28;31	n	0.05	1	19.5	1	15;24	n	0.17	9	45.0	9	43;47	y	0.05	2	42.0	2	42;42	y	0.02	1	56.5	1	60;53	n	0.11	3	24.5	3	27;22	y	0.05	2	39.5	2	41;38	y	0.08	2	23.0	2	22;24	y	0.09	3	29.0	3	25;33	y	0.14	9	53.5	9	52;55	y	0.25	7	20.5	7	21;20	y	0.18	11	51.0	11	53;49	y	ENSMUSG00000038127.16	Ccdc50	chr16	protein_coding	coiled-coil domain containing 50
known_NIR_7145	chr16	29407177;29407694	29407641;29408499	+	29407177	29408499	cassetteExon	ENSMUST00000160597.8	known	0.30	17.5	41	19;16	41	y	0.30	11.0	26	9;13	26	y	0.31	24.5	54	20;29	54	y	0.36	30.0	54	22;38	54	y	0.37	30.5	51	32;29	51	y	0.40	15.5	23	12;19	23	y	0.38	24.0	40	25;23	40	y	0.32	12.5	27	13;12	27	y	0.31	18.5	42	17;20	42	y	0.24	30.0	94	28;32	94	y	0.35	29.0	53	30;28	53	y	0.28	30.0	77	21;39	77	y	ENSMUSG00000038084.17	Opa1	chr16	protein_coding	OPA1, mitochondrial dynamin like GTPase
known_NIR_7146	chr16	29408566;29416514	29416404;29421030	+	29408566	29421030	cassetteExon	ENSMUST00000160597.8	known	0.73	37.5	14	36;39	14	y	0.59	24.0	17	19;29	17	y	0.59	42.5	30	48;37	30	y	0.56	53.0	41	58;48	41	y	0.69	54.5	25	50;59	25	y	0.66	19.0	10	26;12	10	y	0.61	40.0	26	35;45	26	y	0.43	18.0	24	19;17	24	y	0.73	38.0	14	41;35	14	y	0.65	79.5	43	79;80	43	y	0.74	48.0	17	43;53	17	y	0.66	75.0	39	75;75	39	y	ENSMUSG00000038084.17	Opa1	chr16	protein_coding	OPA1, mitochondrial dynamin like GTPase
known_NIR_7147	chr16	29885360	29885690	+	29885068	29885690	A5SS	ENSMUST00000023171.8	known	0.00	0	19	0	19	n	0.00	0	22	0	22	n	0.00	0	53	0	53	n	0.00	0	23	0	23	n	0.00	0	63	0	63	n	0.00	0	25	0	25	n	0.02	1	40	1	40	n	0.00	0	33	0	33	n	0.00	0	40	0	40	n	0.09	2	21	2	21	y	0.00	0	46	0	46	n	0.00	0	63	0	63	n	ENSMUSG00000022528.9	Hes1	chr16	protein_coding	hes family bHLH transcription factor 1
known_NIR_7148	chr16	30134719;30140713	30140624;30141690	-	30134719	30141690	cassetteExon	ENSMUST00000061350.13	known	0.35	45.0	82	43;47	82	y	0.43	40.5	53	41;40	53	y	0.29	55.5	139	53;58	139	y	0.34	46.5	91	45;48	91	y	0.34	63.5	123	66;61	123	y	0.36	43.0	78	44;42	78	y	0.51	91.5	87	94;89	87	y	0.36	45.0	81	34;56	81	y	0.41	46.0	66	45;47	66	y	0.41	83.0	118	81;85	118	y	0.37	47.5	81	56;39	81	y	0.37	59.5	103	57;62	103	y	ENSMUSG00000022533.15	Atp13a3	chr16	protein_coding	ATPase type 13A3
known_NIR_7149	chr16	30151204	30152542	-	30151204	30152577	A5SS	ENSMUST00000061350.13	known	0.00	0	115	0	115	n	0.00	0	54	0	54	n	0.00	0	181	0	181	n	0.00	0	117	0	117	n	0.00	0	186	0	186	n	0.00	0	91	0	91	n	0.02	3	136	3	136	y	0.00	0	98	0	98	n	0.00	0	98	0	98	n	0.01	1	148	1	148	n	0.00	0	108	0	108	n	0.00	0	147	0	147	n	ENSMUSG00000022533.15	Atp13a3	chr16	protein_coding	ATPase type 13A3
known_NIR_7150	chr16	30333640	30348230	-	30337150	30348230	3pMXE	ENSMUST00000125559.8	known	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.30	3	7	3	7	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	1.00	2	0	2	0	n	0.00	0	2	0	2	n	ENSMUSG00000022537.19	Tmem44	chr16	protein_coding	transmembrane protein 44
known_NIR_7151	chr16	30333640;30337150	30337118;30348230	-	30333640	30348230	cassetteExon	ENSMUST00000144491.8	known	1.00	2.0	0	3;1	0	n	1.00	2.5	0	3;2	0	n	0.67	2.0	1	2;2	1	n	1.00	3.5	0	5;2	0	n	0.62	5.0	3	3;7	3	y	-	-	-	-	-	-	1.00	2.5	0	2;3	0	n	1.00	1.0	0	1;1	0	n	1.00	3.0	0	3;3	0	n	1.00	3.0	0	3;3	0	n	0.00	0.0	2	0;0	2	n	1.00	1.0	0	0;2	0	n	ENSMUSG00000022537.19	Tmem44	chr16	protein_coding	transmembrane protein 44
known_NIR_7152	chr16	30393424	30400874	-	30393424;30399863	30399777;30400874	ES	ENSMUST00000117363.9	known	0.00	0	27.5	0	20;35	n	0.00	0	28.5	0	25;32	n	0.02	1	61.5	1	63;60	n	0.00	0	45.0	0	40;50	n	0.00	0	56.0	0	49;63	n	0.00	0	30.5	0	29;32	n	0.00	0	45.5	0	40;51	n	0.00	0	31.5	0	26;37	n	0.00	0	31.5	0	29;34	n	0.05	2	38.0	2	37;39	y	0.00	0	40.5	0	30;51	n	0.05	2	37.5	2	25;50	y	ENSMUSG00000022538.21	Lsg1	chr16	protein_coding	large 60S subunit nuclear export GTPase 1
known_NIR_7153	chr16	30393424;30396815	30396717;30399777	-	30393424	30399777	cassetteExon	ENSMUST00000117363.9	known	0.00	0.0	20	0;0	20	n	0.00	0.0	25	0;0	25	n	0.03	2.0	63	2;2	63	y	0.02	1.0	40	0;2	40	n	0.03	1.5	49	0;3	49	n	0.00	0.0	29	0;0	29	n	0.01	0.5	40	0;1	40	n	0.05	1.5	26	0;3	26	n	0.00	0.0	29	0;0	29	n	0.01	0.5	37	0;1	37	n	0.02	0.5	30	0;1	30	n	0.00	0.0	25	0;0	25	n	ENSMUSG00000022538.21	Lsg1	chr16	protein_coding	large 60S subunit nuclear export GTPase 1
known_NIR_7154	chr16	30400978	30401349	-	30400960	30401349	A3SS	ENSMUST00000117363.9	known	0.00	0	45	0	45	n	0.05	2	42	2	42	y	0.00	0	56	0	56	n	0.00	0	54	0	54	n	0.00	0	53	0	53	n	0.00	0	42	0	42	n	0.04	2	50	2	50	y	0.00	0	34	0	34	n	0.08	3	33	3	33	y	0.00	0	42	0	42	n	0.00	0	23	0	23	n	0.00	0	55	0	55	n	ENSMUSG00000022538.21	Lsg1	chr16	protein_coding	large 60S subunit nuclear export GTPase 1
known_NIR_7155	chr16	31247805	31256810	+	31241330	31256810	A5SS	ENSMUST00000089759.9	known	0.00	0	319	0	319	n	0.00	1	288	1	288	n	0.00	0	227	0	227	n	0.00	1	452	1	452	n	0.00	1	321	1	321	n	0.00	0	147	0	147	n	0.02	8	474	8	474	y	0.00	1	222	1	222	n	0.01	2	380	2	380	y	0.00	1	767	1	767	n	0.00	2	439	2	439	y	0.00	1	319	1	319	n	ENSMUSG00000046598.16	Bdh1	chr16	protein_coding	3-hydroxybutyrate dehydrogenase, type 1
known_NIR_7156	chr16	31562088	31600600	+	31562088	31590575	3pMXE	ENSMUST00000155958.2	known	0.68	25	12	25	12	y	0.43	9	12	9	12	y	0.35	15	28	15	28	y	0.55	26	21	26	21	y	0.65	28	15	28	15	y	0.36	9	16	9	16	y	0.27	8	22	8	22	y	0.40	10	15	10	15	y	0.67	12	6	12	6	y	0.60	26	17	26	17	y	0.36	10	18	10	18	y	0.46	22	26	22	26	y	ENSMUSG00000022770.18	Dlg1	chr16	protein_coding	discs large MAGUK scaffold protein 1
known_NIR_7157	chr16	31562088	31600600	+	31562088;31590673	31590575;31600600	ES	ENSMUST00000115205.9	known	0.64	25	14.0	25	12;16	y	0.44	9	11.5	9	12;11	y	0.32	15	32.5	15	28;37	y	0.50	26	26.0	26	21;31	y	0.52	28	25.5	28	15;36	y	0.33	9	18.0	9	16;20	y	0.23	8	27.5	8	22;33	y	0.36	10	18.0	10	15;21	y	0.50	12	12.0	12	6;18	y	0.53	26	23.5	26	17;30	y	0.35	10	18.5	10	18;19	y	0.45	22	26.5	22	26;27	y	ENSMUSG00000022770.18	Dlg1	chr16	protein_coding	discs large MAGUK scaffold protein 1
known_NIR_7158	chr16	31615783	31624432	+	31615828	31624432	A5SS	ENSMUST00000115205.9	known	0.26	11	31	11	31	y	0.27	4	11	4	11	y	0.20	9	37	9	37	y	0.22	7	25	7	25	y	0.13	5	34	5	34	y	0.30	8	19	8	19	y	0.21	8	31	8	31	y	0.14	3	18	3	18	y	0.29	9	22	9	22	y	0.30	13	31	13	31	y	0.33	7	14	7	14	y	0.15	10	57	10	57	y	ENSMUSG00000022770.18	Dlg1	chr16	protein_coding	discs large MAGUK scaffold protein 1
known_NIR_7159	chr16	31655122	31656863	+	31655122	31656868	A3SS	ENSMUST00000115205.9	known	0.00	0	46	0	46	n	0.00	0	38	0	38	n	0.00	0	47	0	47	n	0.00	0	59	0	59	n	0.00	0	58	0	58	n	0.00	0	36	0	36	n	0.00	0	54	0	54	n	0.07	2	25	2	25	y	0.00	0	52	0	52	n	0.00	0	78	0	78	n	0.00	0	40	0	40	n	0.00	0	82	0	82	n	ENSMUSG00000022770.18	Dlg1	chr16	protein_coding	discs large MAGUK scaffold protein 1
known_NIR_7160	chr16	31661657	31665655	+	31661657	31665652	A3SS	ENSMUST00000064477.14	known	0.28	7	18	7	18	y	0.44	7	9	7	9	y	0.48	13	14	13	14	y	0.24	9	29	9	29	y	0.32	12	26	12	26	y	0.12	2	14	2	14	y	0.57	23	17	23	17	y	0.25	6	18	6	18	y	0.29	7	17	7	17	y	0.30	14	32	14	32	y	0.23	6	20	6	20	y	0.27	15	40	15	40	y	ENSMUSG00000022770.18	Dlg1	chr16	protein_coding	discs large MAGUK scaffold protein 1
known_NIR_7161	chr16	31661657	31666454	+	31661657	31665652	A3SS&ES	ENSMUST00000147382.2	known	0.47	16	18	16	18	y	0.40	6	9	6	9	y	0.44	11	14	11	14	y	0.36	16	29	16	29	y	0.40	17	26	17	26	y	0.33	7	14	7	14	y	0.39	11	17	11	17	y	0.36	10	18	10	18	y	0.50	17	17	17	17	y	0.32	15	32	15	32	y	0.38	12	20	12	20	y	0.26	14	40	14	40	y	ENSMUSG00000022770.18	Dlg1	chr16	protein_coding	discs large MAGUK scaffold protein 1
known_NIR_7162	chr16	31661657;31665751	31665652;31666454	+	31661657	31666454	cassetteExon	ENSMUST00000115205.9	known	0.38	10.0	16	18;2	16	y	0.45	5.0	6	9;1	6	n	0.41	7.5	11	14;1	11	n	0.48	15.0	16	29;1	16	n	0.47	15.0	17	26;4	17	y	0.53	8.0	7	14;2	7	y	0.46	9.5	11	17;2	11	y	0.51	10.5	10	18;3	10	y	0.33	8.5	17	17;0	17	n	0.53	17.0	15	32;2	15	y	0.48	11.0	12	20;2	12	y	0.60	21.0	14	40;2	14	y	ENSMUSG00000022770.18	Dlg1	chr16	protein_coding	discs large MAGUK scaffold protein 1
known_NIR_7163	chr16	31661657;31665751	31665652;31672661	+	31661657;31666487	31666454;31672661	MXE	ENSMUST00000115205.9	known	0.59	26.5	18.5	18;35	16;21	y	0.71	19.5	8.0	9;30	6;10	y	0.69	28.5	13.0	14;43	11;15	y	0.68	38.5	18.0	29;48	16;20	y	0.65	36.0	19.0	26;46	17;21	y	0.71	17.0	7.0	14;20	7;7	y	0.68	34.5	16.0	17;52	11;21	y	0.58	19.0	14.0	18;20	10;18	y	0.53	23.0	20.0	17;29	17;23	y	0.71	44.5	18.5	32;57	15;22	y	0.64	25.0	14.0	20;30	12;16	y	0.76	56.0	17.5	40;72	14;21	y	ENSMUSG00000022770.18	Dlg1	chr16	protein_coding	discs large MAGUK scaffold protein 1
known_NIR_7164	chr16	31661657;31665751	31665655;31666454	+	31661657	31666454	cassetteExon	ENSMUST00000115205.9	known	0.22	4.5	16	7;2	16	y	0.40	4.0	6	7;1	6	n	0.39	7.0	11	13;1	11	n	0.24	5.0	16	9;1	16	n	0.32	8.0	17	12;4	17	y	0.22	2.0	7	2;2	7	y	0.53	12.5	11	23;2	11	y	0.31	4.5	10	6;3	10	y	0.17	3.5	17	7;0	17	n	0.35	8.0	15	14;2	15	y	0.25	4.0	12	6;2	12	y	0.38	8.5	14	15;2	14	y	ENSMUSG00000022770.18	Dlg1	chr16	protein_coding	discs large MAGUK scaffold protein 1
known_NIR_7165	chr16	31661657;31665751	31665655;31672661	+	31661657;31666487	31666454;31672661	MXE	ENSMUST00000115205.9	known	0.53	21.0	18.5	7;35	16;21	y	0.70	18.5	8.0	7;30	6;10	y	0.68	28.0	13.0	13;43	11;15	y	0.61	28.5	18.0	9;48	16;20	y	0.60	29.0	19.0	12;46	17;21	y	0.61	11.0	7.0	2;20	7;7	y	0.70	37.5	16.0	23;52	11;21	y	0.48	13.0	14.0	6;20	10;18	y	0.47	18.0	20.0	7;29	17;23	y	0.66	35.5	18.5	14;57	15;22	y	0.56	18.0	14.0	6;30	12;16	y	0.71	43.5	17.5	15;72	14;21	y	ENSMUSG00000022770.18	Dlg1	chr16	protein_coding	discs large MAGUK scaffold protein 1
known_NIR_7166	chr16	31665751	31672661	+	31666487	31672661	5pMXE	ENSMUST00000155847.8	known	0.62	35	21	35	21	y	0.75	30	10	30	10	y	0.74	43	15	43	15	y	0.71	48	20	48	20	y	0.69	46	21	46	21	y	0.74	20	7	20	7	y	0.71	52	21	52	21	y	0.53	20	18	20	18	y	0.56	29	23	29	23	y	0.72	57	22	57	22	y	0.65	30	16	30	16	y	0.77	72	21	72	21	y	ENSMUSG00000022770.18	Dlg1	chr16	protein_coding	discs large MAGUK scaffold protein 1
known_NIR_7167	chr16	31665751;31666487	31666454;31672661	+	31665751	31672661	cassetteExon	ENSMUST00000064477.14	known	0.25	11.5	35	2;21	35	y	0.15	5.5	30	1;10	30	n	0.16	8.0	43	1;15	43	n	0.18	10.5	48	1;20	48	n	0.21	12.5	46	4;21	46	y	0.18	4.5	20	2;7	20	y	0.18	11.5	52	2;21	52	y	0.34	10.5	20	3;18	20	y	0.28	11.5	29	0;23	29	n	0.17	12.0	57	2;22	57	y	0.23	9.0	30	2;16	30	y	0.14	11.5	72	2;21	72	y	ENSMUSG00000022770.18	Dlg1	chr16	protein_coding	discs large MAGUK scaffold protein 1
known_NIR_7168	chr16	31794847	31796498	-	31787755	31796498	A3SS	ENSMUST00000231360.2	known	0.12	2	15	2	15	y	0.18	2	9	2	9	y	0.07	2	26	2	26	y	0.25	5	15	5	15	y	0.08	2	23	2	23	y	0.07	1	13	1	13	n	0.17	5	24	5	24	y	0.06	1	17	1	17	n	0.06	1	15	1	15	n	0.30	8	19	8	19	y	0.15	2	11	2	11	y	0.08	2	22	2	22	y	ENSMUSG00000022772.13	Senp5	chr16	protein_coding	SUMO/sentrin specific peptidase 5
known_NIR_7169	chr16	31809283	31821814	-	31809283	31821810	A5SS	ENSMUST00000231360.2	known	0.06	1	15	1	15	n	0.00	0	4	0	4	n	0.00	0	33	0	33	n	0.05	1	19	1	19	n	0.08	2	24	2	24	y	0.17	2	10	2	10	y	0.00	0	22	0	22	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.09	2	20	2	20	y	0.12	2	14	2	14	y	0.10	1	9	1	9	n	ENSMUSG00000022772.13	Senp5	chr16	protein_coding	SUMO/sentrin specific peptidase 5
known_NIR_7170	chr16	31904155	31911162	-	31904155;31906325	31906112;31911162	ES	ENSMUST00000232321.2	known	0.14	7	44.5	7	48;41	y	0.09	5	52.5	5	73;32	y	0.06	4	58.0	4	61;55	y	0.05	3	55.5	3	58;53	y	0.07	5	63.0	5	70;56	y	0.00	0	26.5	0	29;24	n	0.03	2	67.5	2	92;43	y	0.03	1	31.0	1	34;28	n	0.04	2	46.0	2	62;30	y	0.06	5	75.5	5	91;60	y	0.08	5	55.0	5	72;38	y	0.00	0	63.0	0	75;51	n	ENSMUSG00000023791.19	Pigx	chr16	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class X
known_NIR_7171	chr16	31904155	31911162	-	31906325	31911162	3pMXE	ENSMUST00000133584.8	known	0.15	7	41	7	41	y	0.14	5	32	5	32	y	0.07	4	55	4	55	y	0.05	3	53	3	53	y	0.08	5	56	5	56	y	0.00	0	24	0	24	n	0.04	2	43	2	43	y	0.03	1	28	1	28	n	0.06	2	30	2	30	y	0.08	5	60	5	60	y	0.12	5	38	5	38	y	0.00	0	51	0	51	n	ENSMUSG00000023791.19	Pigx	chr16	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class X
known_NIR_7172	chr16	31906325	31906866	-	31906325	31911162	A5SS	ENSMUST00000232321.2	known	0.00	0	41	0	41	n	0.00	0	32	0	32	n	0.00	0	55	0	55	n	0.00	0	53	0	53	n	0.02	1	56	1	56	n	0.00	0	24	0	24	n	0.00	0	43	0	43	n	0.00	0	28	0	28	n	0.00	0	30	0	30	n	0.00	0	60	0	60	n	0.05	2	38	2	38	y	0.00	0	51	0	51	n	ENSMUSG00000023791.19	Pigx	chr16	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class X
known_NIR_7173	chr16	31911303	31914371	-	31911303	31918294	A5SS	ENSMUST00000143011.8	known	1.00	5	0	5	0	n	0.80	4	1	4	1	n	0.80	8	2	8	2	y	0.43	3	4	3	4	n	1.00	14	0	14	0	n	1.00	7	0	7	0	n	0.89	8	1	8	1	n	1.00	2	0	2	0	n	1.00	5	0	5	0	n	1.00	11	0	11	0	n	1.00	9	0	9	0	n	0.90	9	1	9	1	n	ENSMUSG00000023791.19	Pigx	chr16	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class X
known_NIR_7174	chr16	31911303	31918294	-	31911303	31915818	A5SS&ES	ENSMUST00000232321.2	known	0.00	0	40	0	40	n	0.03	1	32	1	32	n	0.04	2	43	2	43	y	0.10	4	36	4	36	y	0.00	0	60	0	60	n	0.00	0	17	0	17	n	0.02	1	49	1	49	n	0.00	0	29	0	29	n	0.00	0	25	0	25	n	0.00	0	43	0	43	n	0.00	0	34	0	34	n	0.03	1	37	1	37	n	ENSMUSG00000023791.19	Pigx	chr16	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class X
known_NIR_7175	chr16	31911303	31918294	-	31911303;31915881	31915818;31918294	ES	ENSMUST00000189013.8	known	0.00	0	24.5	0	40;9	n	0.04	1	23.0	1	32;14	n	0.07	2	28.5	2	43;14	y	0.15	4	22.5	4	36;9	y	0.00	0	38.0	0	60;16	n	0.00	0	12.5	0	17;8	n	0.03	1	29.5	1	49;10	n	0.00	0	18.0	0	29;7	n	0.00	0	15.5	0	25;6	n	0.00	0	26.0	0	43;9	n	0.00	0	21.5	0	34;9	n	0.04	1	25.0	1	37;13	n	ENSMUSG00000023791.19	Pigx	chr16	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class X
known_NIR_7176	chr16	31911303;31914526	31914371;31915818	-	31911303	31915818	cassetteExon	ENSMUST00000232321.2	known	0.07	3.0	40	5;1	40	n	0.09	3.0	32	4;2	32	y	0.12	6.0	43	8;4	43	y	0.10	4.0	36	3;5	36	y	0.15	10.5	60	14;7	60	y	0.28	6.5	17	7;6	17	y	0.08	4.0	49	8;0	49	n	0.03	1.0	29	2;0	29	n	0.14	4.0	25	5;3	25	y	0.17	8.5	43	11;6	43	y	0.16	6.5	34	9;4	34	y	0.15	6.5	37	9;4	37	y	ENSMUSG00000023791.19	Pigx	chr16	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class X
known_NIR_7177	chr16	31915881	31918288	-	31915881	31918294	A5SS	ENSMUST00000189013.8	known	0.74	25	9	25	9	y	0.59	20	14	20	14	y	0.70	32	14	32	14	y	0.71	22	9	22	9	y	0.70	38	16	38	16	y	0.62	13	8	13	8	y	0.80	40	10	40	10	y	0.78	25	7	25	7	y	0.83	30	6	30	6	y	0.83	45	9	45	9	y	0.68	19	9	19	9	y	0.72	33	13	33	13	y	ENSMUSG00000023791.19	Pigx	chr16	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class X
known_NIR_7178	chr16	31915881	31918288	-	31915881	31918473	A5SS	ENSMUST00000232321.2	known	1.00	25	0	25	0	n	0.91	20	2	20	2	y	1.00	32	0	32	0	n	0.96	22	1	22	1	n	0.97	38	1	38	1	n	1.00	13	0	13	0	n	0.98	40	1	40	1	n	0.96	25	1	25	1	n	1.00	30	0	30	0	n	0.98	45	1	45	1	n	1.00	19	0	19	0	n	1.00	33	0	33	0	n	ENSMUSG00000023791.19	Pigx	chr16	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class X
known_NIR_7179	chr16	31915881	31918294	-	31915881	31918473	A5SS	ENSMUST00000232321.2	known	1.00	9	0	9	0	n	0.88	14	2	14	2	y	1.00	14	0	14	0	n	0.90	9	1	9	1	n	0.94	16	1	16	1	n	1.00	8	0	8	0	n	0.91	10	1	10	1	n	0.88	7	1	7	1	n	1.00	6	0	6	0	n	0.90	9	1	9	1	n	1.00	9	0	9	0	n	1.00	13	0	13	0	n	ENSMUSG00000023791.19	Pigx	chr16	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class X
known_NIR_7180	chr16	32066343	32070641	+	32066085	32070641	A5SS	ENSMUST00000141820.8	known	0.56	9	7	9	7	y	0.47	9	10	9	10	y	0.45	5	6	5	6	y	0.35	6	11	6	11	y	0.55	11	9	11	9	y	0.78	7	2	7	2	n	0.68	19	9	19	9	y	0.67	6	3	6	3	n	0.50	3	3	3	3	n	0.44	11	14	11	14	y	0.45	5	6	5	6	y	0.44	8	10	8	10	y	ENSMUSG00000022787.11	Wdr53	chr16	protein_coding	WD repeat domain 53
known_NIR_7181	chr16	32066446	32070641	+	32066085	32070641	A5SS	ENSMUST00000141820.8	known	0.12	1	7	1	7	n	0.09	1	10	1	10	n	0.25	2	6	2	6	n	0.15	2	11	2	11	y	0.10	1	9	1	9	n	0.50	2	2	2	2	n	0.18	2	9	2	9	y	0.40	2	3	2	3	n	0.25	1	3	1	3	n	0.12	2	14	2	14	y	0.14	1	6	1	6	n	0.09	1	10	1	10	n	ENSMUSG00000022787.11	Wdr53	chr16	protein_coding	WD repeat domain 53
known_NIR_7182	chr16	32066446	32070641	+	32066343	32070641	A5SS	ENSMUST00000023474.4	known	0.10	1	9	1	9	n	0.10	1	9	1	9	n	0.29	2	5	2	5	n	0.25	2	6	2	6	n	0.08	1	11	1	11	n	0.22	2	7	2	7	n	0.10	2	19	2	19	y	0.25	2	6	2	6	n	0.25	1	3	1	3	n	0.15	2	11	2	11	y	0.17	1	5	1	5	n	0.11	1	8	1	8	n	ENSMUSG00000022787.11	Wdr53	chr16	protein_coding	WD repeat domain 53
known_NIR_7183	chr16	32250112	32270523	+	32249849	32270523	A5SS	ENSMUST00000115137.8	known	0.26	9	26	9	26	y	0.13	3	20	3	20	y	0.02	1	50	1	50	n	0.05	5	86	5	86	y	0.02	2	80	2	80	y	0.09	3	29	3	29	y	0.14	8	50	8	50	y	0.05	2	35	2	35	y	0.03	1	30	1	30	n	0.07	6	80	6	80	y	0.05	2	40	2	40	y	0.07	4	50	4	50	y	ENSMUSG00000005615.16	Pcyt1a	chr16	protein_coding	phosphate cytidylyltransferase 1, choline, alpha isoform
known_NIR_7184	chr16	32250256	32270523	+	32249849	32270523	A5SS	ENSMUST00000115137.8	known	0.04	1	26	1	26	n	0.05	1	20	1	20	n	0.00	0	50	0	50	n	0.00	0	86	0	86	n	0.02	2	80	2	80	y	0.00	0	29	0	29	n	0.07	4	50	4	50	y	0.00	0	35	0	35	n	0.00	0	30	0	30	n	0.05	4	80	4	80	y	0.02	1	40	1	40	n	0.02	1	50	1	50	n	ENSMUSG00000005615.16	Pcyt1a	chr16	protein_coding	phosphate cytidylyltransferase 1, choline, alpha isoform
known_NIR_7185	chr16	32250256	32270523	+	32250112	32270523	A5SS	ENSMUST00000123199.8	known	0.10	1	9	1	9	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.50	2	2	2	2	n	0.00	0	3	0	3	n	0.33	4	8	4	8	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.40	4	6	4	6	y	0.33	1	2	1	2	n	0.20	1	4	1	4	n	ENSMUSG00000005615.16	Pcyt1a	chr16	protein_coding	phosphate cytidylyltransferase 1, choline, alpha isoform
known_NIR_7186	chr16	32428174	32431986	+	32427854	32431986	A5SS	ENSMUST00000023486.15	known	0.12	1	7	1	7	n	0.00	0	3	0	3	n	0.10	2	18	2	18	y	0.25	3	9	3	9	y	0.08	2	22	2	22	y	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.06	1	16	1	16	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	ENSMUSG00000022797.17	Tfrc	chr16	protein_coding	transferrin receptor
known_NIR_7187	chr16	32475945	32482557	+	32463926	32482557	A5SS	ENSMUST00000124585.2	known	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	18	0	18	n	0.18	3	14	3	14	y	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	23	0	23	n	0.00	0	7	0	7	n	0.00	0	25	0	25	n	ENSMUSG00000022791.20	Tnk2	chr16	protein_coding	tyrosine kinase, non-receptor, 2
known_NIR_7188	chr16	32489034	32489610	+	32489048	32489610	A5SS	ENSMUST00000115126.9	known	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.10	2	18	2	18	y	0.00	0	7	0	7	n	0.10	1	9	1	9	n	0.17	3	15	3	15	y	0.00	0	18	0	18	n	0.00	0	9	0	9	n	0.13	2	13	2	13	y	0.03	1	29	1	29	n	0.00	0	9	0	9	n	0.25	3	9	3	9	y	ENSMUSG00000022791.20	Tnk2	chr16	protein_coding	tyrosine kinase, non-receptor, 2
known_NIR_7189	chr16	32492053	32494340	+	32490451	32494340	A5SS	ENSMUST00000115126.9	known	0.00	0	7	0	7	n	0.40	4	6	4	6	y	0.33	8	16	8	16	y	0.29	2	5	2	5	n	0.24	5	16	5	16	y	0.22	2	7	2	7	n	0.13	2	13	2	13	y	0.20	3	12	3	12	y	0.22	4	14	4	14	y	0.24	4	13	4	13	y	0.13	2	13	2	13	y	0.15	4	22	4	22	y	ENSMUSG00000022791.20	Tnk2	chr16	protein_coding	tyrosine kinase, non-receptor, 2
known_NIR_7190	chr16	32492053	32494340	+	32492098	32494340	A5SS	ENSMUST00000115120.9	known	0.00	0	8	0	8	n	0.27	4	11	4	11	y	0.42	8	11	8	11	y	0.08	2	24	2	24	y	0.19	5	22	5	22	y	0.13	2	13	2	13	y	0.22	2	7	2	7	n	0.60	3	2	3	2	n	0.31	4	9	4	9	y	0.40	4	6	4	6	y	0.15	2	11	2	11	y	0.44	4	5	4	5	n	ENSMUSG00000022791.20	Tnk2	chr16	protein_coding	tyrosine kinase, non-receptor, 2
known_NIR_7191	chr16	32492053	32494340	+	32492228	32494340	A5SS	ENSMUST00000131238.8	known	0.00	0	1	0	1	n	0.80	4	1	4	1	n	0.73	8	3	8	3	y	0.50	2	2	2	2	n	0.83	5	1	5	1	n	1.00	2	0	2	0	n	0.50	2	2	2	2	n	0.50	3	3	3	3	n	0.57	4	3	4	3	n	0.67	4	2	4	2	n	0.29	2	5	2	5	n	1.00	4	0	4	0	n	ENSMUSG00000022791.20	Tnk2	chr16	protein_coding	tyrosine kinase, non-receptor, 2
known_NIR_7192	chr16	32492098	32494340	+	32490451	32494340	A5SS	ENSMUST00000115126.9	known	0.53	8	7	8	7	y	0.65	11	6	11	6	y	0.41	11	16	11	16	y	0.83	24	5	24	5	y	0.58	22	16	22	16	y	0.65	13	7	13	7	y	0.35	7	13	7	13	y	0.14	2	12	2	12	y	0.39	9	14	9	14	y	0.32	6	13	6	13	y	0.46	11	13	11	13	y	0.19	5	22	5	22	y	ENSMUSG00000022791.20	Tnk2	chr16	protein_coding	tyrosine kinase, non-receptor, 2
known_NIR_7193	chr16	32492228	32494340	+	32490451	32494340	A5SS	ENSMUST00000115126.9	known	0.12	1	7	1	7	n	0.14	1	6	1	6	n	0.16	3	16	3	16	y	0.29	2	5	2	5	n	0.06	1	16	1	16	n	0.00	0	7	0	7	n	0.13	2	13	2	13	y	0.20	3	12	3	12	y	0.18	3	14	3	14	y	0.13	2	13	2	13	y	0.28	5	13	5	13	y	0.00	0	22	0	22	n	ENSMUSG00000022791.20	Tnk2	chr16	protein_coding	tyrosine kinase, non-receptor, 2
known_NIR_7194	chr16	32492228	32494340	+	32492098	32494340	A5SS	ENSMUST00000115120.9	known	0.11	1	8	1	8	n	0.08	1	11	1	11	n	0.21	3	11	3	11	y	0.08	2	24	2	24	y	0.04	1	22	1	22	n	0.00	0	13	0	13	n	0.22	2	7	2	7	n	0.60	3	2	3	2	n	0.25	3	9	3	9	y	0.25	2	6	2	6	n	0.31	5	11	5	11	y	0.00	0	5	0	5	n	ENSMUSG00000022791.20	Tnk2	chr16	protein_coding	tyrosine kinase, non-receptor, 2
known_NIR_7195	chr16	32493345	32494340	+	32490451	32494340	A5SS	ENSMUST00000115126.9	known	0.00	0	7	0	7	n	0.14	1	6	1	6	n	0.00	0	16	0	16	n	0.00	0	5	0	5	n	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.07	1	13	1	13	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.07	1	13	1	13	n	0.08	2	22	2	22	y	ENSMUSG00000022791.20	Tnk2	chr16	protein_coding	tyrosine kinase, non-receptor, 2
known_NIR_7196	chr16	32496803	32498277	+	32496803	32497487	3pMXE	ENSMUST00000168506.2	known	0.80	20	5	20	5	y	1.00	24	0	24	0	n	0.92	34	3	34	3	y	0.88	22	3	22	3	y	1.00	25	0	25	0	n	0.88	22	3	22	3	y	0.84	26	5	26	5	y	1.00	16	0	16	0	n	0.92	24	2	24	2	y	0.89	25	3	25	3	y	0.80	16	4	16	4	y	0.71	20	8	20	8	y	ENSMUSG00000022791.20	Tnk2	chr16	protein_coding	tyrosine kinase, non-receptor, 2
known_NIR_7197	chr16	32496803;32497531	32497487;32498277	+	32496803	32498277	cassetteExon	ENSMUST00000115126.9	known	0.17	4.0	20	5;3	20	y	0.06	1.5	24	0;3	24	n	0.08	3.0	34	3;3	34	y	0.14	3.5	22	3;4	22	y	0.06	1.5	25	0;3	25	n	0.14	3.5	22	3;4	22	y	0.10	3.0	26	5;1	26	n	0.06	1.0	16	0;2	16	n	0.08	2.0	24	2;2	24	y	0.17	5.0	25	3;7	25	y	0.24	5.0	16	4;6	16	y	0.32	9.5	20	8;11	20	y	ENSMUSG00000022791.20	Tnk2	chr16	protein_coding	tyrosine kinase, non-receptor, 2
known_NIR_7198	chr16	32499625	32499718	+	32499625	32499724	A3SS	ENSMUST00000115126.9	known	0.97	35	1	35	1	n	1.00	32	0	32	0	n	0.94	29	2	29	2	y	0.95	21	1	21	1	n	0.96	43	2	43	2	y	0.89	33	4	33	4	y	0.91	39	4	39	4	y	1.00	37	0	37	0	n	0.94	30	2	30	2	y	0.98	46	1	46	1	n	0.97	38	1	38	1	n	1.00	41	0	41	0	n	ENSMUSG00000022791.20	Tnk2	chr16	protein_coding	tyrosine kinase, non-receptor, 2
known_NIR_7199	chr16	32499625	32499970	+	32499625;32499813	32499718;32499970	ES	ENSMUST00000115124.9	known	0.00	0	32.0	0	35;29	n	0.00	0	32.0	0	32;32	n	0.07	2	27.0	2	29;25	y	0.00	0	24.0	0	21;27	n	0.02	1	44.0	1	43;45	n	0.00	0	35.5	0	33;38	n	0.07	3	38.0	3	39;37	y	0.03	1	30.0	1	37;23	n	0.03	1	29.0	1	30;28	n	0.00	0	35.0	0	46;24	n	0.03	1	38.5	1	38;39	n	0.00	0	36.0	0	41;31	n	ENSMUSG00000022791.20	Tnk2	chr16	protein_coding	tyrosine kinase, non-receptor, 2
known_NIR_7200	chr16	32499625	32499970	+	32499625;32499813	32499724;32499970	ES	ENSMUST00000115126.9	known	0.00	0	15.0	0	1;29	n	0.00	0	16.0	0	0;32	n	0.13	2	13.5	2	2;25	y	0.00	0	14.0	0	1;27	n	0.04	1	23.5	1	2;45	n	0.00	0	21.0	0	4;38	n	0.13	3	20.5	3	4;37	y	0.08	1	11.5	1	0;23	n	0.06	1	15.0	1	2;28	n	0.00	0	12.5	0	1;24	n	0.05	1	20.0	1	1;39	n	0.00	0	15.5	0	0;31	n	ENSMUSG00000022791.20	Tnk2	chr16	protein_coding	tyrosine kinase, non-receptor, 2
known_NIR_7201	chr16	32677415	32697633	-	32677415	32688463	5pMXE	ENSMUST00000115105.9	known	0.29	2	5	2	5	n	0.33	1	2	1	2	n	0.20	1	4	1	4	n	0.44	4	5	4	5	n	0.53	8	7	8	7	y	0.56	5	4	5	4	n	0.71	10	4	10	4	y	1.00	1	0	1	0	n	0.56	5	4	5	4	n	0.75	6	2	6	2	n	1.00	5	0	5	0	n	0.71	5	2	5	2	n	ENSMUSG00000035629.20	Rubcn	chr16	protein_coding	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein
known_NIR_7202	chr16	32719309	32721003	+	32719309	32725902	A3SS	ENSMUST00000125843.2	known	1.00	33	0	33	0	n	0.96	27	1	27	1	n	1.00	77	0	77	0	n	1.00	56	0	56	0	n	1.00	79	0	79	0	n	1.00	51	0	51	0	n	1.00	70	0	70	0	n	1.00	43	0	43	0	n	1.00	44	0	44	0	n	1.00	61	0	61	0	n	1.00	30	0	30	0	n	0.95	62	3	62	3	y	ENSMUSG00000022800.15	Fyttd1	chr16	protein_coding	forty-two-three domain containing 1
known_NIR_7203	chr16	32719309	32722789	+	32719309;32721077	32721003;32722789	ES	ENSMUST00000023489.11	known	0.02	1	43.5	1	33;54	n	0.00	0	33.0	0	27;39	n	0.05	5	88.5	5	77;100	y	0.03	2	57.5	2	56;59	y	0.01	1	89.0	1	79;99	n	0.00	0	54.0	0	51;57	n	0.01	1	68.5	1	70;67	n	0.00	0	39.5	0	43;36	n	0.02	1	51.5	1	44;59	n	0.02	2	83.0	2	61;105	y	0.00	0	35.0	0	30;40	n	0.00	0	68.5	0	62;75	n	ENSMUSG00000022800.15	Fyttd1	chr16	protein_coding	forty-two-three domain containing 1
known_NIR_7204	chr16	32719309	32722789	+	32721077	32722789	5pMXE	ENSMUST00000137863.2	known	0.02	1	54	1	54	n	0.00	0	39	0	39	n	0.05	5	100	5	100	y	0.03	2	59	2	59	y	0.01	1	99	1	99	n	0.00	0	57	0	57	n	0.01	1	67	1	67	n	0.00	0	36	0	36	n	0.02	1	59	1	59	n	0.02	2	105	2	105	y	0.00	0	40	0	40	n	0.00	0	75	0	75	n	ENSMUSG00000022800.15	Fyttd1	chr16	protein_coding	forty-two-three domain containing 1
known_NIR_7205	chr16	32719309	32725902	+	32722915	32725902	5pMXE	ENSMUST00000127493.2	known	0.00	0	56	0	56	n	0.03	1	35	1	35	n	0.00	0	121	0	121	n	0.00	0	74	0	74	n	0.00	0	123	0	123	n	0.00	0	67	0	67	n	0.00	0	96	0	96	n	0.00	0	45	0	45	n	0.00	0	67	0	67	n	0.00	0	87	0	87	n	0.00	0	62	0	62	n	0.02	3	119	3	119	y	ENSMUSG00000022800.15	Fyttd1	chr16	protein_coding	forty-two-three domain containing 1
known_NIR_7206	chr16	32806397	32808801	+	32806397;32807258	32807109;32808801	ES	ENSMUST00000023491.13	known	0.42	5	7.0	5	9;5	y	0.20	1	4.0	1	6;2	n	0.21	2	7.5	2	8;7	y	0.14	1	6.0	1	8;4	n	0.16	2	10.5	2	10;11	y	0.44	2	2.5	2	1;4	n	0.32	3	6.5	3	6;7	y	0.27	2	5.5	2	11;0	n	0.00	0	3.5	0	3;4	n	0.17	1	5.0	1	3;7	n	0.00	0	3.0	0	3;3	n	0.25	2	6.0	2	9;3	y	ENSMUSG00000022801.14	Lrch3	chr16	protein_coding	leucine-rich repeats and calponin homology (CH) domain containing 3
known_NIR_7207	chr16	32815366	32817752	+	32815366;32816283	32816176;32817752	ES	ENSMUST00000023491.13	known	0.00	0	6.5	0	9;4	n	0.10	1	9.0	1	8;10	n	0.15	1	5.5	1	7;4	n	0.00	0	4.0	0	7;1	n	0.20	2	8.0	2	7;9	y	0.00	0	5.0	0	6;4	n	0.00	0	10.5	0	12;9	n	0.15	1	5.5	1	5;6	n	0.00	0	4.0	0	2;6	n	0.00	0	9.5	0	13;6	n	0.00	0	4.5	0	6;3	n	0.00	0	6.0	0	6;6	n	ENSMUSG00000022801.14	Lrch3	chr16	protein_coding	leucine-rich repeats and calponin homology (CH) domain containing 3
known_NIR_7208	chr16	32815366	32817752	+	32816283	32817752	A5SS&ES	ENSMUST00000142290.3	known	0.00	0	4	0	4	n	0.09	1	10	1	10	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.18	2	9	2	9	y	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	ENSMUSG00000022801.14	Lrch3	chr16	protein_coding	leucine-rich repeats and calponin homology (CH) domain containing 3
known_NIR_7209	chr16	32876925	32877506	+	32876880	32877506	A5SS	ENSMUST00000078804.12	known	0.13	113	783	113	783	y	0.12	116	825	116	825	y	0.10	103	879	103	879	y	0.13	113	776	113	776	y	0.12	127	897	127	897	y	0.11	51	434	51	434	y	0.12	132	942	132	942	y	0.13	76	503	76	503	y	0.12	96	719	96	719	y	0.12	114	853	114	853	y	0.11	99	843	99	843	y	0.14	131	821	131	821	y	ENSMUSG00000060636.15	Rpl35a	chr16	protein_coding	ribosomal protein L35A
known_NIR_7210	chr16	32876987	32877506	+	32876880	32877506	A5SS	ENSMUST00000078804.12	known	0.02	13	783	13	783	y	0.01	7	825	7	825	y	0.02	16	879	16	879	y	0.01	10	776	10	776	y	0.01	12	897	12	897	y	0.01	5	434	5	434	y	0.01	8	942	8	942	y	0.01	7	503	7	503	y	0.01	9	719	9	719	y	0.02	16	853	16	853	y	0.01	12	843	12	843	y	0.01	9	821	9	821	y	ENSMUSG00000060636.15	Rpl35a	chr16	protein_coding	ribosomal protein L35A
known_NIR_7211	chr16	32876987	32877506	+	32876925	32877506	A5SS	ENSMUST00000115079.8	known	0.10	13	113	13	113	y	0.06	7	116	7	116	y	0.13	16	103	16	103	y	0.08	10	113	10	113	y	0.09	12	127	12	127	y	0.09	5	51	5	51	y	0.06	8	132	8	132	y	0.08	7	76	7	76	y	0.09	9	96	9	96	y	0.12	16	114	16	114	y	0.11	12	99	12	99	y	0.06	9	131	9	131	y	ENSMUSG00000060636.15	Rpl35a	chr16	protein_coding	ribosomal protein L35A
known_NIR_7212	chr16	32877275	32877506	+	32876880	32877506	A5SS	ENSMUST00000078804.12	known	0.01	4	783	4	783	y	0.01	5	825	5	825	y	0.00	2	879	2	879	y	0.01	5	776	5	776	y	0.01	5	897	5	897	y	0.00	0	434	0	434	n	0.00	0	942	0	942	n	0.00	0	503	0	503	n	0.01	6	719	6	719	y	0.01	11	853	11	853	y	0.01	5	843	5	843	y	0.01	12	821	12	821	y	ENSMUSG00000060636.15	Rpl35a	chr16	protein_coding	ribosomal protein L35A
known_NIR_7213	chr16	32877275	32877506	+	32876925	32877506	A5SS	ENSMUST00000115079.8	known	0.03	4	113	4	113	y	0.04	5	116	5	116	y	0.02	2	103	2	103	y	0.04	5	113	5	113	y	0.04	5	127	5	127	y	0.00	0	51	0	51	n	0.00	0	132	0	132	n	0.00	0	76	0	76	n	0.06	6	96	6	96	y	0.09	11	114	11	114	y	0.05	5	99	5	99	y	0.08	12	131	12	131	y	ENSMUSG00000060636.15	Rpl35a	chr16	protein_coding	ribosomal protein L35A
known_NIR_7214	chr16	32877275	32877506	+	32876987	32877506	A5SS	ENSMUST00000115078.8	known	0.24	4	13	4	13	y	0.42	5	7	5	7	y	0.11	2	16	2	16	y	0.33	5	10	5	10	y	0.29	5	12	5	12	y	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.40	6	9	6	9	y	0.41	11	16	11	16	y	0.29	5	12	5	12	y	0.57	12	9	12	9	y	ENSMUSG00000060636.15	Rpl35a	chr16	protein_coding	ribosomal protein L35A
known_NIR_7215	chr16	32877535	32877760	+	32877548	32877760	A5SS	ENSMUST00000078804.12	known	0.00	6	2050	6	2050	y	0.00	6	2147	6	2147	y	0.00	2	2228	2	2228	y	0.00	6	1997	6	1997	y	0.00	2	2354	2	2354	y	0.00	1	1085	1	1085	n	0.00	0	2390	0	2390	n	0.00	0	1237	0	1237	n	0.00	5	1805	5	1805	y	0.00	3	2354	3	2354	y	0.00	7	2215	7	2215	y	0.00	6	2191	6	2191	y	ENSMUSG00000060636.15	Rpl35a	chr16	protein_coding	ribosomal protein L35A
known_NIR_7216	chr16	33200749	33200886	-	33200728	33200886	A3SS	ENSMUST00000231849.2	known	0.40	6	9	6	9	y	0.00	0	3	0	3	n	0.54	13	11	13	11	y	0.75	6	2	6	2	n	0.39	12	19	12	19	y	0.71	17	7	17	7	y	0.50	13	13	13	13	y	0.50	5	5	5	5	y	0.43	6	8	6	8	y	0.38	9	15	9	15	y	0.70	14	6	14	6	y	0.43	6	8	6	8	y	ENSMUSG00000097318.3	1700007L15Rik	chr16	lncRNA	RIKEN cDNA 1700007L15 gene
known_NIR_7217	chr16	33531069	33539877	+	33531069	33545795	A3SS	ENSMUST00000152782.8	known	1.00	2	0	2	0	n	1.00	2	0	2	0	n	0.73	8	3	8	3	y	1.00	4	0	4	0	n	1.00	2	0	2	0	n	1.00	8	0	8	0	n	0.60	6	4	6	4	y	1.00	4	0	4	0	n	1.00	3	0	3	0	n	1.00	5	0	5	0	n	1.00	2	0	2	0	n	1.00	2	0	2	0	n	ENSMUSG00000075254.13	Heg1	chr16	protein_coding	heart development protein with EGF-like domains 1
known_NIR_7218	chr16	33766980	33769306	+	33766980	33768085	A3SS&ES	ENSMUST00000115028.11	known	0.00	0	163	0	163	n	0.03	5	164	5	164	y	0.00	0	99	0	99	n	0.00	0	123	0	123	n	0.00	0	215	0	215	n	0.00	0	83	0	83	n	0.00	0	224	0	224	n	0.00	0	78	0	78	n	0.04	4	103	4	103	y	0.00	0	186	0	186	n	0.04	8	175	8	175	y	0.00	0	144	0	144	n	ENSMUSG00000022817.16	Itgb5	chr16	protein_coding	integrin beta 5
known_NIR_7219	chr16	33768222	33769027	+	33768251	33769027	A5SS	ENSMUST00000115028.11	known	0.02	4	158	4	158	y	0.00	0	200	0	200	n	0.02	3	156	3	156	y	0.02	4	188	4	188	y	0.01	3	275	3	275	y	0.02	2	108	2	108	y	0.03	8	257	8	257	y	0.00	0	90	0	90	n	0.03	5	151	5	151	y	0.03	7	222	7	222	y	0.03	7	207	7	207	y	0.02	4	203	4	203	y	ENSMUSG00000022817.16	Itgb5	chr16	protein_coding	integrin beta 5
known_NIR_7220	chr16	33830308	33830892	-	33829699	33830892	A3SS	ENSMUST00000114973.9	known	0.86	6	1	6	1	n	1.00	19	0	19	0	n	1.00	2	0	2	0	n	0.33	2	4	2	4	n	1.00	7	0	7	0	n	1.00	4	0	4	0	n	1.00	11	0	11	0	n	-	-	-	-	-	-	0.86	6	1	6	1	n	0.79	11	3	11	3	y	1.00	3	0	3	0	n	0.85	11	2	11	2	y	ENSMUSG00000061751.17	Kalrn	chr16	protein_coding	kalirin, RhoGEF kinase
known_NIR_7221	chr16	33834046	33834328	-	33831015	33834328	A3SS	ENSMUST00000114973.9	known	0.53	9	8	9	8	y	0.40	8	12	8	12	y	0.50	7	7	7	7	y	0.58	14	10	14	10	y	0.69	9	4	9	4	y	0.50	4	4	4	4	n	0.58	15	11	15	11	y	0.64	7	4	7	4	y	0.56	9	7	9	7	y	0.56	14	11	14	11	y	0.59	17	12	17	12	y	0.25	3	9	3	9	y	ENSMUSG00000061751.17	Kalrn	chr16	protein_coding	kalirin, RhoGEF kinase
known_NIR_7222	chr16	33834046	33834328	-	33834051	33834328	A3SS	ENSMUST00000114966.8	known	0.18	9	40	9	40	y	0.11	8	63	8	63	y	0.21	7	27	7	27	y	0.22	14	51	14	51	y	0.12	9	63	9	63	y	0.24	4	13	4	13	y	0.20	15	59	15	59	y	0.13	7	48	7	48	y	0.17	9	43	9	43	y	0.17	14	68	14	68	y	0.26	17	48	17	48	y	0.07	3	41	3	41	y	ENSMUSG00000061751.17	Kalrn	chr16	protein_coding	kalirin, RhoGEF kinase
known_NIR_7223	chr16	33834051	33834328	-	33831015	33834328	A3SS	ENSMUST00000114973.9	known	0.83	40	8	40	8	y	0.84	63	12	63	12	y	0.79	27	7	27	7	y	0.84	51	10	51	10	y	0.94	63	4	63	4	y	0.76	13	4	13	4	y	0.84	59	11	59	11	y	0.92	48	4	48	4	y	0.86	43	7	43	7	y	0.86	68	11	68	11	y	0.80	48	12	48	12	y	0.82	41	9	41	9	y	ENSMUSG00000061751.17	Kalrn	chr16	protein_coding	kalirin, RhoGEF kinase
known_NIR_7224	chr16	33834581	33836762	-	33834584	33836762	A3SS	ENSMUST00000114973.9	known	0.56	48	38	48	38	y	0.62	75	46	75	46	y	0.51	33	32	33	32	y	0.72	56	22	56	22	y	0.60	56	37	56	37	y	0.55	17	14	17	14	y	0.53	54	48	54	48	y	0.59	32	22	32	22	y	0.66	62	32	62	32	y	0.52	71	66	71	66	y	0.63	60	35	60	35	y	0.53	48	42	48	42	y	ENSMUSG00000061751.17	Kalrn	chr16	protein_coding	kalirin, RhoGEF kinase
known_NIR_7225	chr16	33860379	33873930	-	33870292	33873930	3pMXE	ENSMUST00000114961.8	known	1.00	45	0	45	0	n	1.00	55	0	55	0	n	1.00	27	0	27	0	n	0.99	74	1	74	1	n	0.97	62	2	62	2	y	1.00	33	0	33	0	n	1.00	71	0	71	0	n	1.00	38	0	38	0	n	1.00	56	0	56	0	n	1.00	108	0	108	0	n	0.99	66	1	66	1	n	0.97	56	2	56	2	y	ENSMUSG00000061751.17	Kalrn	chr16	protein_coding	kalirin, RhoGEF kinase
known_NIR_7226	chr16	33875485	33936592	-	33875485	33916166	5pMXE	ENSMUST00000114973.9	known	0.04	2	44	2	44	y	0.00	0	38	0	38	n	0.00	0	17	0	17	n	0.00	0	64	0	64	n	0.04	3	65	3	65	y	0.00	0	9	0	9	n	0.02	1	56	1	56	n	0.00	0	36	0	36	n	0.05	2	35	2	35	y	0.01	1	95	1	95	n	0.00	0	35	0	35	n	0.00	0	40	0	40	n	ENSMUSG00000061751.17	Kalrn	chr16	protein_coding	kalirin, RhoGEF kinase
known_NIR_7227	chr16	34814700	34815444	+	34809375	34815444	A5SS	ENSMUST00000023538.9	known	0.02	2	98	2	98	y	0.01	1	76	1	76	n	0.00	0	85	0	85	n	0.04	4	100	4	100	y	0.01	1	145	1	145	n	0.00	0	86	0	86	n	0.00	0	106	0	106	n	0.00	0	114	0	114	n	0.00	0	64	0	64	n	0.00	0	101	0	101	n	0.00	0	71	0	71	n	0.09	4	43	4	43	y	ENSMUSG00000022836.12	Mylk	chr16	protein_coding	myosin, light polypeptide kinase
known_NIR_7228	chr16	35134657	35149868	-	35134657;35139239	35139174;35149868	ES	ENSMUST00000043521.5	known	0.09	5	52.5	5	51;54	y	0.05	2	37.5	2	31;44	y	0.07	4	53.5	4	51;56	y	0.08	5	54.5	5	54;55	y	0.18	12	55.0	12	47;63	y	0.00	0	27.0	0	27;27	n	0.04	2	44.5	2	45;44	y	0.06	2	31.5	2	24;39	y	0.10	4	35.5	4	43;28	y	0.05	3	57.5	3	60;55	y	0.00	0	51.5	0	48;55	n	0.04	2	45.5	2	42;49	y	ENSMUSG00000034473.15	Sec22a	chr16	protein_coding	SEC22 homolog A, vesicle trafficking protein
known_NIR_7229	chr16	35182129	35183845	-	35182129	35184194	A5SS	ENSMUST00000043521.5	known	0.14	2	12	2	12	y	0.16	3	16	3	16	y	0.00	0	35	0	35	n	0.00	0	23	0	23	n	0.06	2	31	2	31	y	0.00	0	14	0	14	n	0.12	4	28	4	28	y	0.00	0	9	0	9	n	0.00	0	25	0	25	n	0.00	0	28	0	28	n	0.00	0	28	0	28	n	0.00	0	34	0	34	n	ENSMUSG00000034473.15	Sec22a	chr16	protein_coding	SEC22 homolog A, vesicle trafficking protein
known_NIR_7230	chr16	35230805	35231297	-	35230824	35231297	A3SS	ENSMUST00000023550.9	known	0.04	12	293	12	293	y	0.04	13	356	13	356	y	0.06	27	454	27	454	y	0.06	23	378	23	378	y	0.04	19	411	19	411	y	0.03	7	232	7	232	y	0.06	22	353	22	353	y	0.08	19	223	19	223	y	0.03	8	254	8	254	y	0.05	18	377	18	377	y	0.07	20	277	20	277	y	0.04	14	358	14	358	y	ENSMUSG00000022844.9	Pdia5	chr16	protein_coding	protein disulfide isomerase associated 5
known_NIR_7231	chr16	35287027	35292935	-	35287027	35311099	A5SS	ENSMUST00000023550.9	known	0.00	0	55	0	55	n	0.00	0	69	0	69	n	0.02	3	157	3	157	y	0.01	1	103	1	103	n	0.00	0	145	0	145	n	0.01	1	93	1	93	n	0.00	0	92	0	92	n	0.00	0	58	0	58	n	0.04	2	55	2	55	y	0.00	0	94	0	94	n	0.00	0	40	0	40	n	0.01	1	93	1	93	n	ENSMUSG00000022844.9	Pdia5	chr16	protein_coding	protein disulfide isomerase associated 5
known_NIR_7232	chr16	35759576	35761403	+	35759430	35761403	A5SS	ENSMUST00000114878.8	known	0.23	9	31	9	31	y	0.08	2	22	2	22	y	0.24	18	56	18	56	y	0.23	14	46	14	46	y	0.17	10	49	10	49	y	0.10	3	28	3	28	y	0.19	7	30	7	30	y	0.24	10	32	10	32	y	0.26	5	14	5	14	y	0.19	9	38	9	38	y	0.24	7	22	7	22	y	0.20	11	43	11	43	y	ENSMUSG00000022906.16	Parp9	chr16	protein_coding	poly (ADP-ribose) polymerase family, member 9
known_NIR_7233	chr16	35761505	35767871	+	35761505	35763739	3pMXE	ENSMUST00000128878.8	known	0.00	0	37	0	37	n	0.03	1	28	1	28	n	0.02	2	81	2	81	y	0.00	0	55	0	55	n	0.05	4	71	4	71	y	0.00	0	35	0	35	n	0.00	0	50	0	50	n	0.05	2	38	2	38	y	0.14	3	19	3	19	y	0.02	1	50	1	50	n	0.03	1	34	1	34	n	0.00	0	45	0	45	n	ENSMUSG00000022906.16	Parp9	chr16	protein_coding	poly (ADP-ribose) polymerase family, member 9
known_NIR_7234	chr16	35761505	35767871	+	35761505;35763772	35763739;35767871	ES	ENSMUST00000114878.8	known	0.00	0	32.5	0	37;28	n	0.05	1	19.5	1	28;11	n	0.03	2	67.0	2	81;53	y	0.00	0	48.5	0	55;42	n	0.07	4	57.0	4	71;43	y	0.00	0	28.0	0	35;21	n	0.00	0	45.5	0	50;41	n	0.05	2	34.5	2	38;31	y	0.15	3	16.5	3	19;14	y	0.02	1	49.5	1	50;49	n	0.03	1	29.5	1	34;25	n	0.00	0	41.0	0	45;37	n	ENSMUSG00000022906.16	Parp9	chr16	protein_coding	poly (ADP-ribose) polymerase family, member 9
known_NIR_7235	chr16	35761505;35763880	35763739;35767871	+	35761505	35767871	cassetteExon	ENSMUST00000023622.13	known	1.00	20.5	0	37;4	0	n	0.95	18.0	1	28;8	1	n	0.96	45.0	2	81;9	2	y	1.00	32.5	0	55;10	0	n	0.91	42.5	4	71;14	4	y	1.00	19.5	0	35;4	0	n	1.00	32.0	0	50;14	0	n	0.92	24.0	2	38;10	2	y	0.83	15.0	3	19;11	3	y	0.97	30.5	1	50;11	1	n	0.95	19.0	1	34;4	1	n	1.00	24.0	0	45;3	0	n	ENSMUSG00000022906.16	Parp9	chr16	protein_coding	poly (ADP-ribose) polymerase family, member 9
known_NIR_7236	chr16	35763772	35767871	+	35766322	35767871	A5SS&ES	ENSMUST00000122870.2	known	0.97	28	1	28	1	n	0.69	11	5	11	5	y	0.96	53	2	53	2	y	1.00	42	0	42	0	n	1.00	43	0	43	0	n	0.91	21	2	21	2	y	0.89	41	5	41	5	y	0.97	31	1	31	1	n	1.00	14	0	14	0	n	0.94	49	3	49	3	y	0.96	25	1	25	1	n	1.00	37	0	37	0	n	ENSMUSG00000022906.16	Parp9	chr16	protein_coding	poly (ADP-ribose) polymerase family, member 9
known_NIR_7237	chr16	35763772;35766322	35766139;35767871	+	35763772	35767871	cassetteExon	ENSMUST00000114878.8	known	0.05	1.5	28	2;1	28	n	0.21	3.0	11	1;5	11	n	0.05	3.0	53	4;2	53	y	0.02	1.0	42	2;0	42	n	0.02	1.0	43	2;0	43	n	0.12	3.0	21	4;2	21	y	0.08	3.5	41	2;5	41	y	0.02	0.5	31	0;1	31	n	0.10	1.5	14	3;0	14	n	0.07	3.5	49	4;3	49	y	0.11	3.0	25	5;1	25	n	0.03	1.0	37	2;0	37	n	ENSMUSG00000022906.16	Parp9	chr16	protein_coding	poly (ADP-ribose) polymerase family, member 9
known_NIR_7238	chr16	35763880	35767871	+	35763772	35767871	A5SS	ENSMUST00000114878.8	known	0.12	4	28	4	28	y	0.42	8	11	8	11	y	0.15	9	53	9	53	y	0.19	10	42	10	42	y	0.25	14	43	14	43	y	0.16	4	21	4	21	y	0.25	14	41	14	41	y	0.24	10	31	10	31	y	0.44	11	14	11	14	y	0.18	11	49	11	49	y	0.14	4	25	4	25	y	0.07	3	37	3	37	y	ENSMUSG00000022906.16	Parp9	chr16	protein_coding	poly (ADP-ribose) polymerase family, member 9
known_NIR_7239	chr16	35763880	35767871	+	35766322	35767871	A5SS&ES	ENSMUST00000153066.2	known	0.80	4	1	4	1	n	0.62	8	5	8	5	y	0.82	9	2	9	2	y	1.00	10	0	10	0	n	1.00	14	0	14	0	n	0.67	4	2	4	2	n	0.74	14	5	14	5	y	0.91	10	1	10	1	n	1.00	11	0	11	0	n	0.79	11	3	11	3	y	0.80	4	1	4	1	n	1.00	3	0	3	0	n	ENSMUSG00000022906.16	Parp9	chr16	protein_coding	poly (ADP-ribose) polymerase family, member 9
known_NIR_7240	chr16	35804030	35820552	+	35803878	35820552	A5SS	ENSMUST00000004054.13	known	0.00	0	21	0	21	n	0.00	0	13	0	13	n	0.00	0	52	0	52	n	0.00	0	37	0	37	n	0.12	6	44	6	44	y	0.19	5	22	5	22	y	0.00	0	47	0	47	n	0.00	0	22	0	22	n	0.00	0	19	0	19	n	0.00	0	23	0	23	n	0.00	0	31	0	31	n	0.00	0	41	0	41	n	ENSMUSG00000022905.13	Kpna1	chr16	protein_coding	karyopherin (importin) alpha 1
known_NIR_7241	chr16	35864461	35870212	-	35864461;35866857	35866749;35870212	ES	ENSMUST00000004057.9	known	0.01	5	362.5	5	366;359	y	0.04	18	414.0	18	447;381	y	0.04	20	428.5	20	463;394	y	0.03	9	342.0	9	329;355	y	0.04	15	396.5	15	400;393	y	0.04	9	202.5	9	196;209	y	0.03	17	503.0	17	525;481	y	0.02	5	203.0	5	228;178	y	0.02	6	356.5	6	361;352	y	0.03	16	541.5	16	542;541	y	0.03	12	465.5	12	485;446	y	0.02	9	456.5	9	486;427	y	ENSMUSG00000003955.9	Fam162a	chr16	protein_coding	family with sequence similarity 162, member A
known_NIR_7242	chr16	35872778	35891687	-	35872778	35891840	A5SS	ENSMUST00000004057.9	known	0.00	0	235	0	235	n	0.01	2	242	2	242	y	0.00	1	289	1	289	n	0.01	2	239	2	239	y	0.00	1	267	1	267	n	0.03	3	111	3	111	y	0.00	0	305	0	305	n	0.00	0	158	0	158	n	0.00	0	185	0	185	n	0.00	1	317	1	317	n	0.00	0	311	0	311	n	0.00	1	281	1	281	n	ENSMUSG00000003955.9	Fam162a	chr16	protein_coding	family with sequence similarity 162, member A
known_NIR_7243	chr16	35892507	35903061	+	35892507	35910271	A3SS	ENSMUST00000231468.2	known	0.93	94	7	94	7	y	0.93	96	7	96	7	y	0.96	91	4	91	4	y	0.97	112	3	112	3	y	0.91	111	11	111	11	y	0.96	52	2	52	2	y	0.96	130	5	130	5	y	0.92	70	6	70	6	y	0.93	124	10	124	10	y	0.93	154	11	154	11	y	0.94	93	6	93	6	y	0.97	112	4	112	4	y	ENSMUSG00000075229.12	Ccdc58	chr16	protein_coding	coiled-coil domain containing 58
known_NIR_7244	chr16	35892507	35905387	+	35892507;35903186	35903061;35905387	ES	ENSMUST00000164916.9	known	0.01	1	125.5	1	94;157	n	0.01	1	127.0	1	96;158	n	0.01	2	135.5	2	91;180	y	0.01	2	150.5	2	112;189	y	0.01	2	160.0	2	111;209	y	0.00	0	61.5	0	52;71	n	0.01	2	187.0	2	130;244	y	0.00	0	90.5	0	70;111	n	0.04	6	151.0	6	124;178	y	0.02	4	184.0	4	154;214	y	0.05	7	136.0	7	93;179	y	0.03	5	162.0	5	112;212	y	ENSMUSG00000075229.12	Ccdc58	chr16	protein_coding	coiled-coil domain containing 58
known_NIR_7245	chr16	35892507	35910271	+	35892507;35905533	35905387;35910271	ES	ENSMUST00000163352.9	known	0.06	7	118.0	7	1;235	n	0.06	7	120.0	7	1;239	n	0.04	4	102.0	4	2;202	y	0.03	3	91.0	3	2;180	y	0.09	11	116.0	11	2;230	y	0.04	2	50.5	2	0;101	n	0.03	5	143.0	5	2;284	y	0.09	6	59.0	6	0;118	n	0.08	10	110.0	10	6;214	y	0.06	11	167.5	11	4;331	y	0.05	6	111.5	6	7;216	y	0.03	4	137.0	4	5;269	y	ENSMUSG00000075229.12	Ccdc58	chr16	protein_coding	coiled-coil domain containing 58
known_NIR_7246	chr16	35901773	35903061	+	35892507	35903061	A5SS	ENSMUST00000164916.9	known	0.01	1	94	1	94	n	0.01	1	96	1	96	n	0.00	0	91	0	91	n	0.02	2	112	2	112	y	0.03	3	111	3	111	y	0.00	0	52	0	52	n	0.01	1	130	1	130	n	0.03	2	70	2	70	y	0.00	0	124	0	124	n	0.02	3	154	3	154	y	0.00	0	93	0	93	n	0.00	0	112	0	112	n	ENSMUSG00000075229.12	Ccdc58	chr16	protein_coding	coiled-coil domain containing 58
known_NIR_7247	chr16	35909812	35910271	+	35892507	35910271	A5SS	ENSMUST00000231468.2	known	0.00	0	7	0	7	n	0.50	7	7	7	7	y	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.31	5	11	5	11	y	0.75	6	2	6	2	n	0.62	8	5	8	5	y	0.33	3	6	3	6	n	0.29	4	10	4	10	y	0.21	3	11	3	11	y	0.40	4	6	4	6	y	0.43	3	4	3	4	n	ENSMUSG00000075229.12	Ccdc58	chr16	protein_coding	coiled-coil domain containing 58
known_NIR_7248	chr16	35909812	35910271	+	35905533	35910271	A5SS	ENSMUST00000164916.9	known	0.00	0	235	0	235	n	0.03	7	239	7	239	y	0.00	1	202	1	202	n	0.00	0	180	0	180	n	0.02	5	230	5	230	y	0.06	6	101	6	101	y	0.03	8	284	8	284	y	0.02	3	118	3	118	y	0.02	4	214	4	214	y	0.01	3	331	3	331	y	0.02	4	216	4	216	y	0.01	3	269	3	269	y	ENSMUSG00000075229.12	Ccdc58	chr16	protein_coding	coiled-coil domain containing 58
known_NIR_7249	chr16	36582074	36582185	-	36582015	36582185	A3SS	ENSMUST00000023616.11	known	-	-	-	-	-	-	-	-	-	-	-	-	0.16	3	16	3	16	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	0.07	1	14	1	14	n	ENSMUSG00000022899.11	Slc15a2	chr16	protein_coding	solute carrier family 15 (H+/peptide transporter), member 2
known_NIR_7250	chr16	36672030	36676653	+	36671656	36676653	A5SS	ENSMUST00000114819.8	known	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.06	1	17	1	17	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.00	0	20	0	20	n	0.11	2	16	2	16	y	0.00	0	7	0	7	n	0.00	0	20	0	20	n	0.00	0	7	0	7	n	0.00	0	17	0	17	n	ENSMUSG00000022837.15	Iqcb1	chr16	protein_coding	IQ calmodulin-binding motif containing 1
known_NIR_7251	chr16	36678965	36679724	+	36678965	36687921	A3SS	ENSMUST00000114819.8	known	0.00	0	3	0	3	n	0.73	8	3	8	3	y	0.58	14	10	14	10	y	0.00	0	6	0	6	n	0.33	7	14	7	14	y	0.25	1	3	1	3	n	0.71	10	4	10	4	y	0.62	5	3	5	3	n	0.70	7	3	7	3	y	0.27	4	11	4	11	y	0.56	9	7	9	7	y	0.30	3	7	3	7	y	ENSMUSG00000022837.15	Iqcb1	chr16	protein_coding	IQ calmodulin-binding motif containing 1
known_NIR_7252	chr16	36705550	36707601	+	36706590	36707601	5pMXE	ENSMUST00000039855.9	known	0.50	3	3	3	3	n	0.25	1	3	1	3	n	0.27	4	11	4	11	y	0.09	1	10	1	10	n	0.20	2	8	2	8	y	0.33	4	8	4	8	y	0.60	3	2	3	2	n	0.06	1	16	1	16	n	0.00	0	7	0	7	n	0.12	2	15	2	15	y	0.00	0	6	0	6	n	0.29	5	12	5	12	y	ENSMUSG00000034243.18	Golgb1	chr16	protein_coding	golgi autoantigen, golgin subfamily b, macrogolgin 1
known_NIR_7253	chr16	36705550;36706590	36706493;36707601	+	36705550	36707601	cassetteExon	ENSMUST00000135800.2	known	0.54	3.5	3	4;3	3	y	0.71	2.5	1	2;3	1	n	0.68	8.5	4	6;11	4	y	0.86	6.0	1	2;10	1	n	0.81	8.5	2	9;8	2	y	0.56	5.0	4	2;8	4	y	0.62	5.0	3	8;2	3	y	0.91	10.5	1	5;16	1	n	1.00	6.5	0	6;7	0	n	0.81	8.5	2	2;15	2	y	1.00	4.0	0	2;6	0	n	0.67	10.0	5	8;12	5	y	ENSMUSG00000034243.18	Golgb1	chr16	protein_coding	golgi autoantigen, golgin subfamily b, macrogolgin 1
known_NIR_7254	chr16	36711854;36713800	36713678;36715193	+	36711854	36715193	cassetteExon	ENSMUST00000114812.9	known	0.85	11.5	2	17;6	2	y	1.00	12.0	0	8;16	0	n	0.71	17.0	7	7;27	7	y	0.83	9.5	2	10;9	2	y	0.81	17.0	4	12;22	4	y	0.86	12.5	2	9;16	2	y	0.83	10.0	2	7;13	2	y	0.74	14.5	5	18;11	5	y	0.81	8.5	2	7;10	2	y	0.70	11.5	5	10;13	5	y	1.00	9.0	0	11;7	0	n	0.50	7.0	7	7;7	7	y	ENSMUSG00000034243.18	Golgb1	chr16	protein_coding	golgi autoantigen, golgin subfamily b, macrogolgin 1
known_NIR_7255	chr16	3702670	3715115	+	3712348	3715115	A5SS&ES	ENSMUST00000151988.8	known	0.04	8	173	8	173	y	0.03	4	131	4	131	y	0.07	9	128	9	128	y	0.04	10	256	10	256	y	0.03	8	255	8	255	y	0.04	4	88	4	88	y	0.02	5	286	5	286	y	0.03	5	141	5	141	y	0.03	5	187	5	187	y	0.04	14	306	14	306	y	0.03	6	214	6	214	y	0.03	8	243	8	243	y	ENSMUSG00000005982.15	Naa60	chr16	protein_coding	N(alpha)-acetyltransferase 60, NatF catalytic subunit
known_NIR_7256	chr16	3702670;3712348	3712233;3715115	+	3702670	3715115	cassetteExon	ENSMUST00000176625.8	known	0.95	137.5	8	102;173	8	y	0.96	110.0	4	89;131	4	y	0.92	105.5	9	83;128	9	y	0.96	214.0	10	172;256	10	y	0.97	222.5	8	190;255	8	y	0.95	74.5	4	61;88	4	y	0.98	211.5	5	137;286	5	y	0.96	109.0	5	77;141	5	y	0.97	138.0	5	89;187	5	y	0.95	243.0	14	180;306	14	y	0.96	162.0	6	110;214	6	y	0.96	194.0	8	145;243	8	y	ENSMUSG00000005982.15	Naa60	chr16	protein_coding	N(alpha)-acetyltransferase 60, NatF catalytic subunit
known_NIR_7257	chr16	3712348;3713664	3713378;3715115	+	3712348	3715115	cassetteExon	ENSMUST00000151988.8	known	0.02	3.0	173	4;2	173	y	0.02	2.0	131	4;0	131	n	0.02	3.0	128	1;5	128	n	0.02	4.0	256	5;3	256	y	0.03	7.5	255	6;9	255	y	0.02	2.0	88	3;1	88	n	0.01	2.5	286	1;4	286	n	0.02	2.5	141	2;3	141	y	0.01	2.5	187	2;3	187	y	0.04	11.5	306	8;15	306	y	0.03	6.5	214	7;6	214	y	0.01	2.5	243	1;4	243	n	ENSMUSG00000005982.15	Naa60	chr16	protein_coding	N(alpha)-acetyltransferase 60, NatF catalytic subunit
known_NIR_7258	chr16	3713664	3715115	+	3702670	3715115	A5SS	ENSMUST00000176625.8	known	0.20	2	8	2	8	y	0.00	0	4	0	4	n	0.36	5	9	5	9	y	0.23	3	10	3	10	y	0.53	9	8	9	8	y	0.20	1	4	1	4	n	0.44	4	5	4	5	n	0.38	3	5	3	5	n	0.38	3	5	3	5	n	0.52	15	14	15	14	y	0.50	6	6	6	6	y	0.33	4	8	4	8	y	ENSMUSG00000005982.15	Naa60	chr16	protein_coding	N(alpha)-acetyltransferase 60, NatF catalytic subunit
known_NIR_7259	chr16	3713831	3715115	+	3702670	3715115	A5SS	ENSMUST00000176625.8	known	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.20	1	4	1	4	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.07	1	14	1	14	n	0.00	0	6	0	6	n	0.33	4	8	4	8	y	ENSMUSG00000005982.15	Naa60	chr16	protein_coding	N(alpha)-acetyltransferase 60, NatF catalytic subunit
known_NIR_7260	chr16	3717832	3718557	+	3717832	3718507	A3SS	ENSMUST00000151988.8	known	0.13	16	103	16	103	y	0.10	11	102	11	102	y	0.07	9	119	9	119	y	0.13	25	167	25	167	y	0.11	24	196	24	196	y	0.03	2	57	2	57	y	0.10	21	198	21	198	y	0.07	7	99	7	99	y	0.11	15	126	15	126	y	0.13	30	202	30	202	y	0.11	21	178	21	178	y	0.12	20	147	20	147	y	ENSMUSG00000005982.15	Naa60	chr16	protein_coding	N(alpha)-acetyltransferase 60, NatF catalytic subunit
known_NIR_7261	chr16	3717832	3718557	+	3717832	3729315	A3SS	ENSMUST00000176233.2	known	0.76	16	5	16	5	y	0.79	11	3	11	3	y	0.90	9	1	9	1	n	0.74	25	9	25	9	y	0.86	24	4	24	4	y	1.00	2	0	2	0	n	0.88	21	3	21	3	y	0.88	7	1	7	1	n	0.75	15	5	15	5	y	0.83	30	6	30	6	y	0.84	21	4	21	4	y	0.77	20	6	20	6	y	ENSMUSG00000093575.2	Gm20695	chr16	protein_coding	predicted gene 20695
known_NIR_7262	chr16	3717832	3719640	+	3717832	3718507	3pMXE	ENSMUST00000151988.8	known	0.00	0	103	0	103	n	0.00	0	102	0	102	n	0.00	0	119	0	119	n	0.00	0	167	0	167	n	0.01	2	196	2	196	y	0.00	0	57	0	57	n	0.00	0	198	0	198	n	0.00	0	99	0	99	n	0.00	0	126	0	126	n	0.00	0	202	0	202	n	0.00	0	178	0	178	n	0.00	0	147	0	147	n	ENSMUSG00000005982.15	Naa60	chr16	protein_coding	N(alpha)-acetyltransferase 60, NatF catalytic subunit
known_NIR_7263	chr16	3717832	3719640	+	3717832	3718557	A3SS&ES	ENSMUST00000143537.9	known	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	25	0	25	n	0.08	2	24	2	24	y	0.00	0	2	0	2	n	0.00	0	21	0	21	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.00	0	30	0	30	n	0.00	0	21	0	21	n	0.00	0	20	0	20	n	ENSMUSG00000005982.15	Naa60	chr16	protein_coding	N(alpha)-acetyltransferase 60, NatF catalytic subunit
known_NIR_7264	chr16	3717832	3729315	+	3717832	3718507	3pMXE	ENSMUST00000151988.8	known	0.05	5	103	5	103	y	0.03	3	102	3	102	y	0.01	1	119	1	119	n	0.05	9	167	9	167	y	0.02	4	196	4	196	y	0.00	0	57	0	57	n	0.01	3	198	3	198	y	0.01	1	99	1	99	n	0.04	5	126	5	126	y	0.03	6	202	6	202	y	0.02	4	178	4	178	y	0.04	6	147	6	147	y	ENSMUSG00000005982.15	Naa60	chr16	protein_coding	N(alpha)-acetyltransferase 60, NatF catalytic subunit
known_NIR_7265	chr16	3727017	3729315	+	3717832	3729315	A5SS	ENSMUST00000176233.2	known	0.50	5	5	5	5	y	0.57	4	3	4	3	n	0.89	8	1	8	1	n	0.36	5	9	5	9	y	0.43	3	4	3	4	n	1.00	10	0	10	0	n	0.79	11	3	11	3	y	0.67	2	1	2	1	n	0.58	7	5	7	5	y	0.57	8	6	8	6	y	0.60	6	4	6	4	y	0.45	5	6	5	6	y	ENSMUSG00000093575.2	Gm20695	chr16	protein_coding	predicted gene 20695
known_NIR_7266	chr16	37380471	37384031	+	37380471	37383978	A3SS	ENSMUST00000023524.13	known	0.00	0	26	0	26	n	0.00	0	20	0	20	n	0.06	3	44	3	44	y	0.05	2	40	2	40	y	0.11	6	50	6	50	y	0.10	2	18	2	18	y	0.14	6	37	6	37	y	0.09	2	20	2	20	y	0.00	0	17	0	17	n	0.00	0	37	0	37	n	0.14	4	24	4	24	y	0.00	0	42	0	42	n	ENSMUSG00000022827.15	Rabl3	chr16	protein_coding	RAB, member RAS oncogene family-like 3
known_NIR_7267	chr16	37409124	37413716	+	37409124;37410141	37410053;37413716	ES	ENSMUST00000160847.2	known	0.04	47	1063.5	47	1066;1061	y	0.04	33	837.5	33	811;864	y	0.01	4	311.5	4	299;324	y	0.02	33	1451.0	33	1395;1507	y	0.02	27	1181.0	27	1166;1196	y	0.02	4	213.0	4	219;207	y	0.04	43	1047.0	43	985;1109	y	0.02	7	371.5	7	371;372	y	0.04	42	1126.5	42	1090;1163	y	0.04	69	1631.5	69	1608;1655	y	0.04	45	1004.5	45	1005;1004	y	0.03	67	1922.5	67	1878;1967	y	ENSMUSG00000022821.14	Hgd	chr16	protein_coding	homogentisate 1, 2-dioxygenase
known_NIR_7268	chr16	37444745	37452038	+	37444745;37448965	37448784;37452038	ES	ENSMUST00000160847.2	known	0.01	12	1800.5	12	1710;1891	y	0.00	6	1617.0	6	1522;1712	y	0.01	4	334.0	4	325;343	y	0.00	9	1826.5	9	1815;1838	y	0.01	9	1567.0	9	1548;1586	y	0.00	0	273.5	0	286;261	n	0.00	6	1694.5	6	1563;1826	y	0.00	0	425.0	0	375;475	n	0.00	6	1728.0	6	1660;1796	y	0.00	5	2295.0	5	2105;2485	y	0.00	3	1755.0	3	1653;1857	y	0.01	15	2626.0	15	2472;2780	y	ENSMUSG00000022821.14	Hgd	chr16	protein_coding	homogentisate 1, 2-dioxygenase
known_NIR_7269	chr16	38028452;38037513	38037475;38040334	+	38028452	38040334	cassetteExon	ENSMUST00000023507.13	known	0.06	2.0	31	0;4	31	n	0.00	0.0	12	0;0	12	n	0.12	8.0	58	8;8	58	y	0.05	1.5	27	2;1	27	n	0.15	6.5	37	4;9	37	y	0.08	1.5	17	0;3	17	n	0.04	1.5	35	1;2	35	n	0.18	2.0	9	2;2	9	y	0.04	1.0	26	0;2	26	n	0.03	1.0	31	2;0	31	n	0.12	2.5	18	2;3	18	y	0.02	0.5	31	1;0	31	n	ENSMUSG00000022812.15	Gsk3b	chr16	protein_coding	glycogen synthase kinase 3 beta
known_NIR_7270	chr16	38169691	38170039	+	38169691	38172705	A3SS	ENSMUST00000134709.2	known	1.00	9	0	9	0	n	1.00	13	0	13	0	n	1.00	4	0	4	0	n	1.00	9	0	9	0	n	1.00	15	0	15	0	n	1.00	9	0	9	0	n	1.00	12	0	12	0	n	1.00	2	0	2	0	n	1.00	5	0	5	0	n	1.00	13	0	13	0	n	0.91	10	1	10	1	n	0.87	13	2	13	2	y	ENSMUSG00000046516.11	Cox17	chr16	protein_coding	cytochrome c oxidase assembly protein 17, copper chaperone
known_NIR_7271	chr16	38169691	38172705	+	38169691	38172988	A3SS	ENSMUST00000050273.9	known	0.00	0	224	0	224	n	0.00	0	263	0	263	n	0.00	0	250	0	250	n	0.00	0	199	0	199	n	0.00	0	227	0	227	n	0.00	0	131	0	131	n	0.00	0	346	0	346	n	0.00	0	152	0	152	n	0.00	0	220	0	220	n	0.00	0	291	0	291	n	0.00	1	287	1	287	n	0.01	2	255	2	255	y	ENSMUSG00000046516.11	Cox17	chr16	protein_coding	cytochrome c oxidase assembly protein 17, copper chaperone
known_NIR_7272	chr16	38169691;38170093	38170039;38172988	+	38169691	38172988	cassetteExon	ENSMUST00000050273.9	known	0.03	7.5	224	9;6	224	y	0.04	11.5	263	13;10	263	y	0.02	4.5	250	4;5	250	y	0.04	8.5	199	9;8	199	y	0.05	11.0	227	15;7	227	y	0.05	6.5	131	9;4	131	y	0.03	11.5	346	12;11	346	y	0.02	2.5	152	2;3	152	y	0.03	7.0	220	5;9	220	y	0.03	10.0	291	13;7	291	y	0.02	7.0	287	10;4	287	y	0.04	10.5	255	13;8	255	y	ENSMUSG00000046516.11	Cox17	chr16	protein_coding	cytochrome c oxidase assembly protein 17, copper chaperone
known_NIR_7273	chr16	38337232	38338729	-	38331169	38338729	A3SS	ENSMUST00000002925.6	known	0.04	4	87	4	87	y	0.01	1	84	1	84	n	0.00	0	81	0	81	n	0.01	1	111	1	111	n	0.00	0	162	0	162	n	0.05	3	54	3	54	y	0.00	0	153	0	153	n	0.00	0	54	0	54	n	0.01	1	113	1	113	n	0.01	1	161	1	161	n	0.02	2	123	2	123	y	0.00	0	140	0	140	n	ENSMUSG00000002846.10	Timmdc1	chr16	protein_coding	translocase of inner mitochondrial membrane domain containing 1
known_NIR_7274	chr16	38369998	38370445	-	38369795	38370445	A3SS	ENSMUST00000036210.7	known	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.13	2	13	2	13	y	0.11	2	17	2	17	y	0.10	3	26	3	26	y	0.27	6	16	6	16	y	0.27	4	11	4	11	y	0.00	0	13	0	13	n	0.33	2	4	2	4	n	0.24	5	16	5	16	y	0.18	2	9	2	9	y	0.17	4	20	4	20	y	ENSMUSG00000034064.15	Poglut1	chr16	protein_coding	protein O-glucosyltransferase 1
known_NIR_7275	chr16	38402486	38405742	+	38402486	38405538	A3SS	ENSMUST00000163884.8	known	0.05	2	40	2	40	y	0.15	6	34	6	34	y	0.04	3	77	3	77	y	0.12	3	23	3	23	y	0.02	1	52	1	52	n	0.11	6	49	6	49	y	0.00	0	52	0	52	n	0.14	5	31	5	31	y	0.00	0	33	0	33	n	0.04	1	22	1	22	n	0.00	0	24	0	24	n	0.05	2	39	2	39	y	ENSMUSG00000002845.15	Tmem39a	chr16	protein_coding	transmembrane protein 39a
known_NIR_7276	chr16	38405880;38406042	38405981;38406583	+	38405880	38406583	cassetteExon	ENSMUST00000163884.8	known	0.03	1.5	45	1;2	45	n	0.02	1.0	43	0;2	43	n	0.07	6.0	79	2;10	79	y	0.03	1.0	33	2;0	33	n	0.03	1.5	47	3;0	47	n	0.04	1.5	32	1;2	32	n	0.07	3.5	48	4;3	48	y	0.05	1.5	27	1;2	27	n	0.00	0.0	27	0;0	27	n	0.09	3.0	29	3;3	29	y	0.04	1.5	40	0;3	40	n	0.09	4.0	40	4;4	40	y	ENSMUSG00000002845.15	Tmem39a	chr16	protein_coding	transmembrane protein 39a
known_NIR_7277	chr16	38407741	38408545	+	38406770	38408545	A5SS	ENSMUST00000163884.8	known	0.00	0	42	0	42	n	0.02	1	53	1	53	n	0.03	2	78	2	78	y	0.04	1	22	1	22	n	0.00	0	48	0	48	n	0.08	3	35	3	35	y	0.02	1	44	1	44	n	0.08	3	34	3	34	y	0.00	0	33	0	33	n	0.00	0	28	0	28	n	0.00	0	22	0	22	n	0.00	0	27	0	27	n	ENSMUSG00000002845.15	Tmem39a	chr16	protein_coding	transmembrane protein 39a
known_NIR_7278	chr16	3858354	3861817	-	3858295	3861817	A3SS	ENSMUST00000006137.9	known	0.00	0	311	0	311	n	0.00	0	364	0	364	n	0.00	0	260	0	260	n	0.00	1	307	1	307	n	0.00	1	354	1	354	n	0.00	0	172	0	172	n	0.00	2	417	2	417	y	0.00	0	179	0	179	n	0.00	0	314	0	314	n	0.00	0	552	0	552	n	0.00	0	488	0	488	n	0.00	0	485	0	485	n	ENSMUSG00000005981.12	Trap1	chr16	protein_coding	TNF receptor-associated protein 1
known_NIR_7279	chr16	3886202	3886527	-	3886202	3886721	A5SS	ENSMUST00000006137.9	known	0.00	0	204	0	204	n	0.00	0	140	0	140	n	0.00	0	231	0	231	n	0.00	0	292	0	292	n	0.00	0	272	0	272	n	0.01	2	139	2	139	y	0.00	0	254	0	254	n	0.00	0	178	0	178	n	0.00	0	245	0	245	n	0.00	0	378	0	378	n	0.00	0	260	0	260	n	0.00	0	338	0	338	n	ENSMUSG00000005981.12	Trap1	chr16	protein_coding	TNF receptor-associated protein 1
known_NIR_7280	chr16	4311744	4314269	-	4311744	4340857	A5SS	ENSMUST00000132284.2	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.57	26	20	26	20	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022519.15	Srl	chr16	protein_coding	sarcalumenin
known_NIR_7281	chr16	4311744	4314269	-	4311744	4359544	A5SS	ENSMUST00000133440.2	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.90	26	3	26	3	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000022519.15	Srl	chr16	protein_coding	sarcalumenin
known_NIR_7282	chr16	4311744	4340857	-	4311744	4359544	A5SS	ENSMUST00000133440.2	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.87	20	3	20	3	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000022519.15	Srl	chr16	protein_coding	sarcalumenin
known_NIR_7283	chr16	4311744	4340857	-	4311744;4315579	4314269;4340857	ES	ENSMUST00000023161.8	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.44	20	25.5	20	26;25	y	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022519.15	Srl	chr16	protein_coding	sarcalumenin
known_NIR_7284	chr16	4315579	4340857	-	4311744	4340857	A3SS	ENSMUST00000132284.2	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.56	25	20	25	20	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022519.15	Srl	chr16	protein_coding	sarcalumenin
known_NIR_7285	chr16	43183539	43283310	+	43122978	43283310	A5SS	ENSMUST00000126354.8	known	0.00	0	3	0	3	n	0.50	5	5	5	5	y	0.44	7	9	7	9	y	0.67	4	2	4	2	n	0.50	3	3	3	3	n	0.50	3	3	3	3	n	0.25	2	6	2	6	n	0.14	1	6	1	6	n	0.25	1	3	1	3	n	0.40	2	3	2	3	n	0.17	1	5	1	5	n	0.17	1	5	1	5	n	ENSMUSG00000022708.17	Zbtb20	chr16	protein_coding	zinc finger and BTB domain containing 20
known_NIR_7286	chr16	43184335	43283310	+	43122978	43283310	A5SS	ENSMUST00000126354.8	known	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.18	2	9	2	9	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.17	1	5	1	5	n	ENSMUSG00000022708.17	Zbtb20	chr16	protein_coding	zinc finger and BTB domain containing 20
known_NIR_7287	chr16	43390144	43397393	+	43390144	43392097	3pMXE	ENSMUST00000123047.8	known	0.50	2	2	2	2	n	0.00	0	1	0	1	n	0.60	3	2	3	2	n	0.50	2	2	2	2	n	0.60	3	2	3	2	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.62	5	3	5	3	n	0.40	4	6	4	6	y	0.50	1	1	1	1	n	0.17	1	5	1	5	n	ENSMUSG00000022708.17	Zbtb20	chr16	protein_coding	zinc finger and BTB domain containing 20
known_NIR_7288	chr16	43390144	43397393	+	43390144;43392154	43392097;43397393	ES	ENSMUST00000114694.9	known	0.50	2	2.0	2	2;2	n	0.00	0	0.5	0	1;0	n	0.75	3	1.0	3	2;0	n	0.33	2	4.0	2	2;6	y	0.75	3	1.0	3	2;0	n	0.33	1	2.0	1	2;2	n	0.00	0	1.0	0	0;2	n	0.00	0	1.5	0	1;2	n	0.67	5	2.5	5	3;2	y	0.47	4	4.5	4	6;3	y	0.67	1	0.5	1	1;0	n	0.18	1	4.5	1	5;4	n	ENSMUSG00000022708.17	Zbtb20	chr16	protein_coding	zinc finger and BTB domain containing 20
known_NIR_7289	chr16	43390144	43397924	+	43390144	43392097	3pMXE	ENSMUST00000123047.8	known	0.50	2	2	2	2	n	0.00	0	1	0	1	n	0.67	4	2	4	2	n	0.00	0	2	0	2	n	0.67	4	2	4	2	n	0.50	2	2	2	2	n	1.00	10	0	10	0	n	0.50	1	1	1	1	n	0.25	1	3	1	3	n	0.50	6	6	6	6	y	0.89	8	1	8	1	n	0.55	6	5	6	5	y	ENSMUSG00000022708.17	Zbtb20	chr16	protein_coding	zinc finger and BTB domain containing 20
known_NIR_7290	chr16	43390144	43397924	+	43390144;43392154	43392097;43397924	ES	ENSMUST00000151244.8	known	0.67	2	1.0	2	2;0	n	0.00	0	0.5	0	1;0	n	0.80	4	1.0	4	2;0	n	0.00	0	1.5	0	2;1	n	0.73	4	1.5	4	2;1	n	0.67	2	1.0	2	2;0	n	1.00	10	0.0	10	0;0	n	0.67	1	0.5	1	1;0	n	0.40	1	1.5	1	3;0	n	0.55	6	5.0	6	6;4	y	0.94	8	0.5	8	1;0	n	0.67	6	3.0	6	5;1	n	ENSMUSG00000022708.17	Zbtb20	chr16	protein_coding	zinc finger and BTB domain containing 20
known_NIR_7291	chr16	43390144;43397556	43397393;43397924	+	43390144	43397924	cassetteExon	ENSMUST00000146708.8	known	0.67	4.0	2	2;6	2	y	1.00	0.5	0	0;1	0	n	0.62	6.5	4	3;10	4	y	1.00	6.0	0	2;10	0	n	0.53	4.5	4	3;6	4	y	0.60	3.0	2	1;5	2	n	0.23	3.0	10	0;6	10	n	0.50	1.0	1	0;2	1	n	0.82	4.5	1	5;4	1	n	0.37	3.5	6	4;3	6	y	0.16	1.5	8	1;2	8	n	0.33	3.0	6	1;5	6	n	ENSMUSG00000022708.17	Zbtb20	chr16	protein_coding	zinc finger and BTB domain containing 20
known_NIR_7292	chr16	43390144;43397556	43397393;43397924	+	43390144;43392154	43392097;43397924	MXE	ENSMUST00000151244.8	known	0.80	4.0	1.0	2;6	2;0	n	0.50	0.5	0.5	0;1	1;0	n	0.87	6.5	1.0	3;10	2;0	n	0.80	6.0	1.5	2;10	2;1	n	0.75	4.5	1.5	3;6	2;1	n	0.75	3.0	1.0	1;5	2;0	n	1.00	3.0	0.0	0;6	0;0	n	0.67	1.0	0.5	0;2	1;0	n	0.75	4.5	1.5	5;4	3;0	n	0.41	3.5	5.0	4;3	6;4	y	0.75	1.5	0.5	1;2	1;0	n	0.50	3.0	3.0	1;5	5;1	n	ENSMUSG00000022708.17	Zbtb20	chr16	protein_coding	zinc finger and BTB domain containing 20
known_NIR_7293	chr16	43392154;43397556	43397393;43397924	+	43392154	43397924	cassetteExon	ENSMUST00000151244.8	known	1.00	4.0	0	2;6	0	n	1.00	0.5	0	0;1	0	n	1.00	5.0	0	0;10	0	n	0.89	8.0	1	6;10	1	n	0.75	3.0	1	0;6	1	n	1.00	3.5	0	2;5	0	n	1.00	4.0	0	2;6	0	n	1.00	2.0	0	2;2	0	n	1.00	3.0	0	2;4	0	n	0.43	3.0	4	3;3	4	y	1.00	1.0	0	0;2	0	n	0.82	4.5	1	4;5	1	n	ENSMUSG00000022708.17	Zbtb20	chr16	protein_coding	zinc finger and BTB domain containing 20
known_NIR_7294	chr16	43689460	43691984	-	43689460	43691142	A5SS	ENSMUST00000156568.8	known	0.80	4	1	4	1	n	1.00	8	0	8	0	n	0.83	5	1	5	1	n	1.00	4	0	4	0	n	1.00	11	0	11	0	n	0.80	4	1	4	1	n	1.00	3	0	3	0	n	0.75	3	1	3	1	n	0.75	3	1	3	1	n	0.80	8	2	8	2	y	0.57	4	3	4	3	n	1.00	6	0	6	0	n	ENSMUSG00000022704.17	Qtrt2	chr16	protein_coding	queuine tRNA-ribosyltransferase accessory subunit 2
known_NIR_7295	chr16	43700717	43701331	-	43700717	43701356	A5SS	ENSMUST00000156568.8	known	0.50	4	4	4	4	n	0.00	0	3	0	3	n	0.14	2	12	2	12	y	0.00	0	2	0	2	n	0.54	7	6	7	6	y	0.40	2	3	2	3	n	0.20	2	8	2	8	y	0.44	4	5	4	5	n	0.00	0	5	0	5	n	0.75	3	1	3	1	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	ENSMUSG00000022704.17	Qtrt2	chr16	protein_coding	queuine tRNA-ribosyltransferase accessory subunit 2
known_NIR_7296	chr16	43710401	43718453	+	43710401;43712554	43712516;43718453	ES	ENSMUST00000132859.8	known	0.40	1	1.5	1	1;2	n	0.86	3	0.5	3	0;1	n	0.86	3	0.5	3	0;1	n	0.75	3	1.0	3	1;1	n	0.71	6	2.5	6	2;3	y	0.25	1	3.0	1	2;4	n	0.57	2	1.5	2	2;1	n	-	-	-	-	-	-	0.67	2	1.0	2	1;1	n	0.55	3	2.5	3	3;2	n	0.44	2	2.5	2	2;3	n	0.75	3	1.0	3	1;1	n	ENSMUSG00000022701.19	Ccdc191	chr16	protein_coding	coiled-coil domain containing 191
known_NIR_7297	chr16	43710401	43725709	+	43710401;43718594	43718453;43725709	ES	ENSMUST00000178400.9	known	0.60	3	2.0	3	1;3	n	0.00	0	8.0	0	3;13	n	0.00	0	4.5	0	3;6	n	0.00	0	7.0	0	3;11	n	0.29	2	5.0	2	6;4	y	0.00	0	2.5	0	1;4	n	0.36	2	3.5	2	2;5	n	0.00	0	0.5	0	0;1	n	0.29	1	2.5	1	2;3	n	0.00	0	5.0	0	3;7	n	0.00	0	4.5	0	2;7	n	0.00	0	4.0	0	3;5	n	ENSMUSG00000022701.19	Ccdc191	chr16	protein_coding	coiled-coil domain containing 191
known_NIR_7298	chr16	43833400	43849042	-	43833400	43836451	5pMXE	ENSMUST00000036174.10	known	0.92	55	5	55	5	y	0.87	33	5	33	5	y	0.87	61	9	61	9	y	0.77	56	17	56	17	y	0.93	66	5	66	5	y	0.84	31	6	31	6	y	0.95	52	3	52	3	y	0.97	36	1	36	1	n	0.87	39	6	39	6	y	0.88	38	5	38	5	y	0.94	33	2	33	2	y	0.93	55	4	55	4	y	ENSMUSG00000036292.15	Gramd1c	chr16	protein_coding	GRAM domain containing 1C
known_NIR_7299	chr16	43879611	43881688	-	43879611	43883635	A5SS	ENSMUST00000214098.2	known	0.67	8	4	8	4	y	0.17	1	5	1	5	n	0.50	7	7	7	7	y	0.33	8	16	8	16	y	0.33	8	16	8	16	y	0.40	4	6	4	6	y	0.42	8	11	8	11	y	0.57	4	3	4	3	n	0.00	0	7	0	7	n	0.50	10	10	10	10	y	0.58	7	5	7	5	y	0.60	6	4	6	4	y	ENSMUSG00000036292.15	Gramd1c	chr16	protein_coding	GRAM domain containing 1C
known_NIR_7300	chr16	43937245	43959311	-	43937245	43959325	A5SS	ENSMUST00000114666.9	known	0.19	7	29	7	29	y	0.12	1	7	1	7	n	0.30	14	32	14	32	y	0.16	8	42	8	42	y	0.27	13	35	13	35	y	0.28	7	18	7	18	y	0.34	11	21	11	21	y	0.28	8	21	8	21	y	0.33	4	8	4	8	y	0.26	10	28	10	28	y	0.12	2	14	2	14	y	0.11	4	31	4	31	y	ENSMUSG00000052459.14	Atp6v1a	chr16	protein_coding	ATPase, H+ transporting, lysosomal V1 subunit A
known_NIR_7301	chr16	43937245	43959355	-	43937245	43959311	A5SS	ENSMUST00000063661.13	known	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.07	1	14	1	14	n	0.20	2	8	2	8	y	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000052459.14	Atp6v1a	chr16	protein_coding	ATPase, H+ transporting, lysosomal V1 subunit A
known_NIR_7302	chr16	43937245	43959355	-	43937245	43959325	A5SS	ENSMUST00000114666.9	known	0.00	0	29	0	29	n	0.00	0	7	0	7	n	0.03	1	32	1	32	n	0.05	2	42	2	42	y	0.00	0	35	0	35	n	0.00	0	18	0	18	n	0.00	0	21	0	21	n	0.00	0	21	0	21	n	0.00	0	8	0	8	n	0.00	0	28	0	28	n	0.00	0	14	0	14	n	0.00	0	31	0	31	n	ENSMUSG00000052459.14	Atp6v1a	chr16	protein_coding	ATPase, H+ transporting, lysosomal V1 subunit A
known_NIR_7303	chr16	43937245	43959874	-	43937245	43959311	5pMXE	ENSMUST00000063661.13	known	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.22	4	14	4	14	y	0.11	1	8	1	8	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.23	3	10	3	10	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000052459.14	Atp6v1a	chr16	protein_coding	ATPase, H+ transporting, lysosomal V1 subunit A
known_NIR_7304	chr16	43937245	43959874	-	43937245	43959325	5pMXE	ENSMUST00000114666.9	known	0.00	0	29	0	29	n	0.00	0	7	0	7	n	0.11	4	32	4	32	y	0.02	1	42	1	42	n	0.00	0	35	0	35	n	0.00	0	18	0	18	n	0.00	0	21	0	21	n	0.00	0	21	0	21	n	0.00	0	8	0	8	n	0.10	3	28	3	28	y	0.00	0	14	0	14	n	0.00	0	31	0	31	n	ENSMUSG00000052459.14	Atp6v1a	chr16	protein_coding	ATPase, H+ transporting, lysosomal V1 subunit A
known_NIR_7305	chr16	43960474	43976776	+	43960474	43965144	A3SS&ES	ENSMUST00000159514.8	known	1.00	37	0	37	0	n	1.00	27	0	27	0	n	1.00	63	0	63	0	n	0.97	63	2	63	2	y	1.00	60	0	60	0	n	0.97	39	1	39	1	n	1.00	65	0	65	0	n	0.98	40	1	40	1	n	1.00	36	0	36	0	n	1.00	46	0	46	0	n	0.97	33	1	33	1	n	1.00	44	0	44	0	n	ENSMUSG00000022698.18	Naa50	chr16	protein_coding	N(alpha)-acetyltransferase 50, NatE catalytic subunit
known_NIR_7306	chr16	43960474	43976776	+	43960474	43976773	A3SS	ENSMUST00000161326.8	known	0.32	37	79	37	79	y	0.43	27	36	27	36	y	0.40	63	94	63	94	y	0.42	63	87	63	87	y	0.36	60	105	60	105	y	0.41	39	57	39	57	y	0.43	65	86	65	86	y	0.40	40	61	40	61	y	0.41	36	52	36	52	y	0.32	46	99	46	99	y	0.39	33	52	33	52	y	0.33	44	88	44	88	y	ENSMUSG00000022698.18	Naa50	chr16	protein_coding	N(alpha)-acetyltransferase 50, NatE catalytic subunit
known_NIR_7307	chr16	43976909	43978243	+	43976909;43977556	43977437;43978243	ES	ENSMUST00000159514.8	known	0.02	2	93.5	2	107;80	y	0.01	1	81.0	1	81;81	n	0.06	11	160.5	11	152;169	y	0.02	3	131.5	3	136;127	y	0.03	5	180.0	5	181;179	y	0.04	4	89.0	4	87;91	y	0.01	2	150.0	2	149;151	y	0.03	3	96.5	3	87;106	y	0.02	2	91.0	2	98;84	y	0.01	1	158.5	1	158;159	n	0.02	2	96.5	2	88;105	y	0.03	4	127.5	4	119;136	y	ENSMUSG00000022698.18	Naa50	chr16	protein_coding	N(alpha)-acetyltransferase 50, NatE catalytic subunit
known_NIR_7308	chr16	44019384	44020977	+	44019530	44020977	A5SS	ENSMUST00000141015.8	known	1.00	8	0	8	0	n	1.00	6	0	6	0	n	0.91	10	1	10	1	n	1.00	15	0	15	0	n	0.94	31	2	31	2	y	1.00	10	0	10	0	n	0.84	16	3	16	3	y	1.00	9	0	9	0	n	1.00	26	0	26	0	n	1.00	27	0	27	0	n	1.00	16	0	16	0	n	1.00	15	0	15	0	n	ENSMUSG00000068284.15	Usf3	chr16	protein_coding	upstream transcription factor family member 3
known_NIR_7309	chr16	44544831	44549605	+	44544831;44547545	44547391;44549605	ES	ENSMUST00000048788.14	known	0.24	2	6.5	2	6;7	y	0.00	0	4.5	0	3;6	n	0.18	2	9.0	2	8;10	y	0.00	0	12.0	0	12;12	n	0.00	0	8.5	0	4;13	n	0.00	0	6.5	0	5;8	n	0.08	1	11.5	1	11;12	n	0.00	0	11.0	0	11;11	n	0.00	0	7.5	0	6;9	n	0.27	3	8.0	3	4;12	y	0.00	0	4.0	0	3;5	n	0.00	0	11.0	0	10;12	n	ENSMUSG00000036208.14	Nepro	chr16	protein_coding	nucleolus and neural progenitor protein
known_NIR_7310	chr16	44544831	44549605	+	44547545	44549605	5pMXE	ENSMUST00000130805.2	known	0.22	2	7	2	7	n	0.00	0	6	0	6	n	0.17	2	10	2	10	y	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.08	1	12	1	12	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.20	3	12	3	12	y	0.00	0	5	0	5	n	0.00	0	12	0	12	n	ENSMUSG00000036208.14	Nepro	chr16	protein_coding	nucleolus and neural progenitor protein
known_NIR_7311	chr16	44564231	44565646	-	44564231	44565758	A5SS	ENSMUST00000162512.8	known	0.00	0	21	0	21	n	0.22	4	14	4	14	y	0.04	1	27	1	27	n	0.07	2	27	2	27	y	0.10	3	28	3	28	y	0.08	1	12	1	12	n	0.08	2	23	2	23	y	0.07	2	25	2	25	y	0.00	0	29	0	29	n	0.11	3	25	3	25	y	0.00	0	19	0	19	n	0.04	1	24	1	24	n	ENSMUSG00000022668.11	Gtpbp8	chr16	protein_coding	GTP-binding protein 8 (putative)
known_NIR_7312	chr16	44564231	44566362	-	44564231	44565758	A5SS&ES	ENSMUST00000023348.11	known	0.00	0	21	0	21	n	0.00	0	14	0	14	n	0.00	0	27	0	27	n	0.00	0	27	0	27	n	0.00	0	28	0	28	n	0.00	0	12	0	12	n	0.00	0	23	0	23	n	0.00	0	25	0	25	n	0.00	0	29	0	29	n	0.07	2	25	2	25	y	0.00	0	19	0	19	n	0.00	0	24	0	24	n	ENSMUSG00000022668.11	Gtpbp8	chr16	protein_coding	GTP-binding protein 8 (putative)
known_NIR_7313	chr16	44564231	44566362	-	44564231;44565856	44565758;44566362	ES	ENSMUST00000162512.8	known	0.00	0	18.5	0	21;16	n	0.00	0	15.0	0	14;16	n	0.00	0	19.5	0	27;12	n	0.00	0	23.5	0	27;20	n	0.00	0	29.5	0	28;31	n	0.00	0	10.5	0	12;9	n	0.00	0	25.5	0	23;28	n	0.00	0	17.5	0	25;10	n	0.00	0	23.5	0	29;18	n	0.08	2	24.5	2	25;24	y	0.00	0	16.0	0	19;13	n	0.00	0	26.5	0	24;29	n	ENSMUSG00000022668.11	Gtpbp8	chr16	protein_coding	GTP-binding protein 8 (putative)
known_NIR_7314	chr16	44564231;44565856	44565646;44566362	-	44564231	44566362	cassetteExon	ENSMUST00000161436.2	known	1.00	8.0	0	0;16	0	n	1.00	10.0	0	4;16	0	n	1.00	6.5	0	1;12	0	n	1.00	11.0	0	2;20	0	n	1.00	17.0	0	3;31	0	n	1.00	5.0	0	1;9	0	n	1.00	15.0	0	2;28	0	n	1.00	6.0	0	2;10	0	n	1.00	9.0	0	0;18	0	n	0.87	13.5	2	3;24	2	y	1.00	6.5	0	0;13	0	n	1.00	15.0	0	1;29	0	n	ENSMUSG00000022668.11	Gtpbp8	chr16	protein_coding	GTP-binding protein 8 (putative)
known_NIR_7315	chr16	44565856	44566563	-	44565856	44566362	A5SS	ENSMUST00000162512.8	known	0.11	2	16	2	16	y	0.11	2	16	2	16	y	0.14	2	12	2	12	y	0.05	1	20	1	20	n	0.09	3	31	3	31	y	0.00	0	9	0	9	n	0.00	0	28	0	28	n	0.00	0	10	0	10	n	0.10	2	18	2	18	y	0.11	3	24	3	24	y	0.24	4	13	4	13	y	0.17	6	29	6	29	y	ENSMUSG00000022668.11	Gtpbp8	chr16	protein_coding	GTP-binding protein 8 (putative)
known_NIR_7316	chr16	4470625	4472874	-	4453302	4472874	A3SS	ENSMUST00000038552.13	known	0.00	0	22	0	22	n	0.07	1	13	1	13	n	0.16	3	16	3	16	y	0.00	0	27	0	27	n	0.07	2	26	2	26	y	0.17	1	5	1	5	n	0.12	3	21	3	21	y	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.14	3	19	3	19	y	0.09	1	10	1	10	n	0.00	0	10	0	10	n	ENSMUSG00000039637.16	Coro7	chr16	protein_coding	coronin 7
known_NIR_7317	chr16	44964764	44971816	-	44964764;44967698	44967631;44971816	ES	ENSMUST00000023344.10	known	0.00	0	16.0	0	19;13	n	0.00	0	14.5	0	16;13	n	0.00	0	25.0	0	23;27	n	0.00	0	39.0	0	47;31	n	0.11	3	23.5	3	20;27	y	0.00	0	16.5	0	16;17	n	0.00	0	32.5	0	35;30	n	0.05	1	20.0	1	25;15	n	0.00	0	15.5	0	17;14	n	0.06	2	30.5	2	25;36	y	0.00	0	10.5	0	9;12	n	0.00	0	27.0	0	28;26	n	ENSMUSG00000022664.12	Slc35a5	chr16	protein_coding	solute carrier family 35, member A5
known_NIR_7318	chr16	44978009	44978499	-	44978009	44978745	A5SS	ENSMUST00000023344.10	known	0.05	1	20	1	20	n	0.00	0	13	0	13	n	0.00	0	26	0	26	n	0.00	0	23	0	23	n	0.09	3	29	3	29	y	0.00	0	9	0	9	n	0.04	1	23	1	23	n	0.00	0	19	0	19	n	0.00	0	17	0	17	n	0.00	0	34	0	34	n	0.00	0	15	0	15	n	0.00	0	30	0	30	n	ENSMUSG00000022664.12	Slc35a5	chr16	protein_coding	solute carrier family 35, member A5
known_NIR_7319	chr16	4502208	4505101	+	4501609	4505101	A5SS	ENSMUST00000144815.2	known	1.00	149	0	149	0	n	0.98	115	2	115	2	y	1.00	187	0	187	0	n	1.00	160	0	160	0	n	1.00	202	0	202	0	n	1.00	119	0	119	0	n	0.99	193	2	193	2	y	1.00	157	0	157	0	n	0.99	119	1	119	1	n	1.00	200	0	200	0	n	1.00	146	0	146	0	n	1.00	163	0	163	0	n	ENSMUSG00000004069.18	Dnaja3	chr16	protein_coding	DnaJ heat shock protein family (Hsp40) member A3
known_NIR_7320	chr16	4520172	4524432	+	4520172;4523824	4523708;4524432	ES	ENSMUST00000060067.12	known	0.86	295	47.5	295	45;50	y	0.86	263	41.5	263	39;44	y	0.83	330	68.5	330	79;58	y	0.85	233	42.0	233	45;39	y	0.87	376	58.0	376	68;48	y	0.85	241	41.0	241	43;39	y	0.89	390	49.5	390	44;55	y	0.86	191	31.0	191	33;29	y	0.87	223	33.0	223	26;40	y	0.90	355	38.0	355	36;40	y	0.87	273	40.5	273	46;35	y	0.92	286	26.5	286	26;27	y	ENSMUSG00000004069.18	Dnaja3	chr16	protein_coding	DnaJ heat shock protein family (Hsp40) member A3
known_NIR_7321	chr16	4529544	4531504	-	4529467	4531504	A3SS	ENSMUST00000120056.8	known	0.07	3	39	3	39	y	0.06	3	48	3	48	y	0.00	0	45	0	45	n	0.00	0	16	0	16	n	0.00	0	52	0	52	n	0.00	0	27	0	27	n	0.06	3	45	3	45	y	0.03	1	35	1	35	n	0.10	4	35	4	35	y	0.03	1	38	1	38	n	0.08	3	36	3	36	y	0.00	0	31	0	31	n	ENSMUSG00000063445.15	Nmral1	chr16	protein_coding	NmrA-like family domain containing 1
known_NIR_7322	chr16	4530415	4531504	-	4529467	4531504	A3SS	ENSMUST00000120056.8	known	0.00	0	39	0	39	n	0.00	0	48	0	48	n	0.00	0	45	0	45	n	0.00	0	16	0	16	n	0.00	0	52	0	52	n	0.00	0	27	0	27	n	0.00	0	45	0	45	n	0.08	3	35	3	35	y	0.00	0	35	0	35	n	0.00	0	38	0	38	n	0.00	0	36	0	36	n	0.00	0	31	0	31	n	ENSMUSG00000063445.15	Nmral1	chr16	protein_coding	NmrA-like family domain containing 1
known_NIR_7323	chr16	4544335	4580423	+	4544335	4582470	A3SS	ENSMUST00000154117.2	known	0.96	116	5	116	5	y	0.99	121	1	121	1	n	0.99	124	1	124	1	n	1.00	119	0	119	0	n	1.00	166	0	166	0	n	0.98	80	2	80	2	y	0.99	176	1	176	1	n	0.98	98	2	98	2	y	0.97	69	2	69	2	y	1.00	108	0	108	0	n	0.99	104	1	104	1	n	0.99	153	1	153	1	n	ENSMUSG00000004070.16	Hmox2	chr16	protein_coding	heme oxygenase 2
known_NIR_7324	chr16	45552322;45553142	45553101;45557256	-	45552322	45557256	cassetteExon	ENSMUST00000066983.13	known	0.23	4.5	15	5;4	15	y	0.28	5.0	13	5;5	13	y	0.09	3.0	31	4;2	31	y	0.18	3.0	14	3;3	14	y	0.14	2.5	16	3;2	16	y	0.07	1.0	14	1;1	14	n	0.10	2.0	19	4;0	19	n	0.29	6.0	15	6;6	15	y	0.21	3.5	13	4;3	13	y	0.12	3.5	25	3;4	25	y	0.33	5.5	11	7;4	11	y	0.31	8.5	19	7;10	19	y	ENSMUSG00000033157.18	Abhd10	chr16	protein_coding	abhydrolase domain containing 10
known_NIR_7325	chr16	45557998	45563140	-	45557998;45560865	45560682;45563140	ES	ENSMUST00000066983.13	known	0.26	4	11.5	4	7;16	y	0.27	7	19.0	7	27;11	y	0.29	7	17.0	7	17;17	y	0.24	5	15.5	5	16;15	y	0.25	5	15.0	5	16;14	y	0.05	1	19.0	1	14;24	n	0.22	5	18.0	5	19;17	y	0.08	1	11.0	1	10;12	n	0.30	6	14.0	6	19;9	y	0.23	6	20.0	6	23;17	y	0.19	4	17.0	4	16;18	y	0.14	3	18.5	3	18;19	y	ENSMUSG00000033157.18	Abhd10	chr16	protein_coding	abhydrolase domain containing 10
known_NIR_7326	chr16	45592638	45594526	-	45592638	45595307	A5SS	ENSMUST00000036355.13	known	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.06	1	15	1	15	n	0.15	2	11	2	11	y	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.29	5	12	5	12	y	0.23	3	10	3	10	y	0.40	2	3	2	3	n	0.08	1	11	1	11	n	0.00	0	5	0	5	n	0.07	1	13	1	13	n	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
known_NIR_7327	chr16	45592638	45594526	-	45592638	45598076	A5SS	ENSMUST00000131003.8	known	0.00	0	31	0	31	n	0.00	0	14	0	14	n	0.04	1	24	1	24	n	0.09	2	20	2	20	y	0.00	0	48	0	48	n	0.00	0	18	0	18	n	0.13	5	33	5	33	y	0.09	3	32	3	32	y	0.06	2	29	2	29	y	0.02	1	43	1	43	n	0.00	0	20	0	20	n	0.03	1	29	1	29	n	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
known_NIR_7328	chr16	45592638	45598076	-	45592638;45595450	45595307;45598076	ES	ENSMUST00000036355.13	known	0.89	31	4.0	31	6;2	y	0.90	14	1.5	14	1;2	n	0.69	24	11.0	24	15;7	y	0.71	20	8.0	20	11;5	y	0.82	48	10.5	48	13;8	y	0.72	18	7.0	18	10;4	y	0.80	33	8.5	33	12;5	y	0.79	32	8.5	32	10;7	y	0.94	29	2.0	29	3;1	n	0.83	43	9.0	43	11;7	y	0.87	20	3.0	20	5;1	n	0.75	29	9.5	29	13;6	y	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
known_NIR_7329	chr16	45609480	45611661	-	45609480	45621855	A5SS	ENSMUST00000036355.13	known	0.00	0	18	0	18	n	0.00	0	23	0	23	n	0.03	1	31	1	31	n	0.04	1	23	1	23	n	0.00	0	45	0	45	n	0.00	0	18	0	18	n	0.00	0	21	0	21	n	0.00	0	25	0	25	n	0.00	0	22	0	22	n	0.00	0	49	0	49	n	0.00	0	23	0	23	n	0.05	2	37	2	37	y	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
known_NIR_7330	chr16	45646458	45647505	-	45646458	45680685	A5SS	ENSMUST00000134802.8	known	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.62	5	3	5	3	n	0.41	9	13	9	13	y	0.06	1	17	1	17	n	0.17	1	5	1	5	n	0.58	7	5	7	5	y	0.17	1	5	1	5	n	0.08	1	11	1	11	n	0.05	1	19	1	19	n	0.29	2	5	2	5	n	0.06	1	17	1	17	n	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
known_NIR_7331	chr16	45646458	45680685	-	45646458	45664571	5pMXE	ENSMUST00000036355.13	known	0.56	5	4	5	4	n	0.40	4	6	4	6	y	0.10	3	27	3	27	y	0.93	13	1	13	1	n	0.50	17	17	17	17	y	0.56	5	4	5	4	n	0.42	5	7	5	7	y	0.45	5	6	5	6	y	0.73	11	4	11	4	y	0.79	19	5	19	5	y	0.83	5	1	5	1	n	1.00	17	0	17	0	n	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
known_NIR_7332	chr16	45646458;45647589	45647505;45664571	-	45646458	45664571	cassetteExon	ENSMUST00000036355.13	known	0.11	0.5	4	1;0	4	n	0.00	0.0	6	0;0	6	n	0.13	4.0	27	5;3	27	y	0.85	5.5	1	9;2	1	n	0.03	0.5	17	1;0	17	n	0.11	0.5	4	1;0	4	n	0.33	3.5	7	7;0	7	n	0.08	0.5	6	1;0	6	n	0.11	0.5	4	1;0	4	n	0.09	0.5	5	1;0	5	n	0.60	1.5	1	2;1	1	n	1.00	0.5	0	1;0	0	n	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
known_NIR_7333	chr16	45680799;45694235	45694165;45773739	-	45680799	45773739	cassetteExon	ENSMUST00000134802.8	known	0.71	2.5	1	4;1	1	n	1.00	0.5	0	1;0	0	n	0.40	2.0	3	4;0	3	n	0.50	3.0	3	3;3	3	n	0.65	5.5	3	9;2	3	y	-	-	-	-	-	-	0.69	4.5	2	5;4	2	y	-	-	-	-	-	-	1.00	1.5	0	3;0	0	n	0.81	8.5	2	14;3	2	y	1.00	1.0	0	2;0	0	n	0.69	4.5	2	5;4	2	y	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
known_NIR_7334	chr16	45727820	45773739	-	45680799	45773739	A3SS	ENSMUST00000134802.8	known	0.98	42	1	42	1	n	1.00	92	0	92	0	n	0.93	38	3	38	3	y	0.95	57	3	57	3	y	0.95	63	3	63	3	y	1.00	16	0	16	0	n	0.97	75	2	75	2	y	1.00	24	0	24	0	n	1.00	66	0	66	0	n	0.98	109	2	109	2	y	1.00	80	0	80	0	n	0.97	74	2	74	2	y	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
known_NIR_7335	chr16	45727820	45773739	-	45694235	45773739	A3SS	ENSMUST00000136405.2	known	0.98	42	1	42	1	n	1.00	92	0	92	0	n	1.00	38	0	38	0	n	0.95	57	3	57	3	y	0.97	63	2	63	2	y	1.00	16	0	16	0	n	0.95	75	4	75	4	y	1.00	24	0	24	0	n	1.00	66	0	66	0	n	0.97	109	3	109	3	y	1.00	80	0	80	0	n	0.95	74	4	74	4	y	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
known_NIR_7336	chr16	4574976	4580423	+	4544335	4580423	A5SS	ENSMUST00000004172.15	known	0.00	0	116	0	116	n	0.00	0	121	0	121	n	0.02	2	124	2	124	y	0.00	0	119	0	119	n	0.00	0	166	0	166	n	0.02	2	80	2	80	y	0.00	0	176	0	176	n	0.03	3	98	3	98	y	0.00	0	69	0	69	n	0.01	1	108	1	108	n	0.01	1	104	1	104	n	0.01	2	153	2	153	y	ENSMUSG00000004070.16	Hmox2	chr16	protein_coding	heme oxygenase 2
known_NIR_7337	chr16	4574991	4580423	+	4544335	4580423	A5SS	ENSMUST00000004172.15	known	0.08	10	116	10	116	y	0.07	9	121	9	121	y	0.08	11	124	11	124	y	0.08	10	119	10	119	y	0.10	18	166	18	166	y	0.15	14	80	14	80	y	0.06	12	176	12	176	y	0.08	9	98	9	98	y	0.12	9	69	9	69	y	0.12	15	108	15	108	y	0.12	14	104	14	104	y	0.07	12	153	12	153	y	ENSMUSG00000004070.16	Hmox2	chr16	protein_coding	heme oxygenase 2
known_NIR_7338	chr16	4574991	4580423	+	4574976	4580423	A5SS	ENSMUST00000140367.8	known	1.00	10	0	10	0	n	1.00	9	0	9	0	n	0.85	11	2	11	2	y	1.00	10	0	10	0	n	1.00	18	0	18	0	n	0.88	14	2	14	2	y	1.00	12	0	12	0	n	0.75	9	3	9	3	y	1.00	9	0	9	0	n	0.94	15	1	15	1	n	0.93	14	1	14	1	n	0.86	12	2	12	2	y	ENSMUSG00000004070.16	Hmox2	chr16	protein_coding	heme oxygenase 2
known_NIR_7339	chr16	4574991	4580423	+	4575034	4580423	A5SS	ENSMUST00000118885.8	known	0.59	10	7	10	7	y	0.53	9	8	9	8	y	0.42	11	15	11	15	y	0.62	10	6	10	6	y	0.60	18	12	18	12	y	0.64	14	8	14	8	y	0.75	12	4	12	4	y	0.60	9	6	9	6	y	0.56	9	7	9	7	y	0.79	15	4	15	4	y	0.93	14	1	14	1	n	0.80	12	3	12	3	y	ENSMUSG00000004070.16	Hmox2	chr16	protein_coding	heme oxygenase 2
known_NIR_7340	chr16	4575034	4580423	+	4544335	4580423	A5SS	ENSMUST00000004172.15	known	0.06	7	116	7	116	y	0.06	8	121	8	121	y	0.11	15	124	15	124	y	0.05	6	119	6	119	y	0.07	12	166	12	166	y	0.09	8	80	8	80	y	0.02	4	176	4	176	y	0.06	6	98	6	98	y	0.09	7	69	7	69	y	0.04	4	108	4	108	y	0.01	1	104	1	104	n	0.02	3	153	3	153	y	ENSMUSG00000004070.16	Hmox2	chr16	protein_coding	heme oxygenase 2
known_NIR_7341	chr16	4575034	4580423	+	4574976	4580423	A5SS	ENSMUST00000140367.8	known	1.00	7	0	7	0	n	1.00	8	0	8	0	n	0.88	15	2	15	2	y	1.00	6	0	6	0	n	1.00	12	0	12	0	n	0.80	8	2	8	2	y	1.00	4	0	4	0	n	0.67	6	3	6	3	n	1.00	7	0	7	0	n	0.80	4	1	4	1	n	0.50	1	1	1	1	n	0.60	3	2	3	2	n	ENSMUSG00000004070.16	Hmox2	chr16	protein_coding	heme oxygenase 2
known_NIR_7342	chr16	45766076	45768159	+	45766076	45787237	A3SS	ENSMUST00000154775.2	known	1.00	9	0	9	0	n	1.00	14	0	14	0	n	1.00	16	0	16	0	n	1.00	12	0	12	0	n	0.94	34	2	34	2	y	1.00	9	0	9	0	n	0.97	31	1	31	1	n	1.00	11	0	11	0	n	1.00	23	0	23	0	n	1.00	41	0	41	0	n	1.00	11	0	11	0	n	1.00	19	0	19	0	n	ENSMUSG00000085826.2	Gm15638	chr16	lncRNA	predicted gene 15638
known_NIR_7343	chr16	45766076	45768663	+	45766076	45768159	A3SS	ENSMUST00000128159.2	known	0.50	9	9	9	9	y	0.30	6	14	6	14	y	0.16	3	16	3	16	y	0.20	3	12	3	12	y	0.23	10	34	10	34	y	0.31	4	9	4	9	y	0.33	15	31	15	31	y	0.31	5	11	5	11	y	0.21	6	23	6	23	y	0.21	11	41	11	41	y	0.31	5	11	5	11	y	0.34	10	19	10	19	y	ENSMUSG00000085826.2	Gm15638	chr16	lncRNA	predicted gene 15638
known_NIR_7344	chr16	45766076	45768663	+	45766076	45787237	A3SS	ENSMUST00000154775.2	known	1.00	9	0	9	0	n	1.00	6	0	6	0	n	1.00	3	0	3	0	n	1.00	3	0	3	0	n	0.83	10	2	10	2	y	1.00	4	0	4	0	n	0.94	15	1	15	1	n	1.00	5	0	5	0	n	1.00	6	0	6	0	n	1.00	11	0	11	0	n	1.00	5	0	5	0	n	1.00	10	0	10	0	n	ENSMUSG00000085826.2	Gm15638	chr16	lncRNA	predicted gene 15638
known_NIR_7345	chr16	4581710	4582470	+	4544335	4582470	A5SS	ENSMUST00000154117.2	known	0.97	175	5	175	5	y	0.99	158	1	158	1	n	0.99	196	1	196	1	n	1.00	164	0	164	0	n	1.00	273	0	273	0	n	0.98	118	2	118	2	y	1.00	294	1	294	1	n	0.99	133	2	133	2	y	0.99	144	2	144	2	y	1.00	201	0	201	0	n	0.99	137	1	137	1	n	0.99	187	1	187	1	n	ENSMUSG00000004070.16	Hmox2	chr16	protein_coding	heme oxygenase 2
known_NIR_7346	chr16	4586831	4587504	-	4586882	4587504	A3SS	ENSMUST00000147225.8	known	0.07	10	132	10	132	y	0.00	0	88	0	88	n	0.00	0	120	0	120	n	0.00	0	125	0	125	n	0.00	0	186	0	186	n	0.00	0	108	0	108	n	0.00	0	158	0	158	n	0.00	0	101	0	101	n	0.00	0	63	0	63	n	0.00	0	98	0	98	n	0.00	0	75	0	75	n	0.00	0	108	0	108	n	ENSMUSG00000004071.14	Cdip1	chr16	protein_coding	cell death inducing Trp53 target 1
known_NIR_7347	chr16	4588599	4608016	-	4588599	4607695	5pMXE	ENSMUST00000004173.12	known	0.45	61	76	61	76	y	0.36	37	65	37	65	y	0.26	41	116	41	116	y	0.33	41	84	41	84	y	0.35	57	107	57	107	y	0.36	36	64	36	64	y	0.44	59	76	59	76	y	0.34	35	68	35	68	y	0.30	19	44	19	44	y	0.35	37	70	37	70	y	0.32	25	52	25	52	y	0.29	35	84	35	84	y	ENSMUSG00000004071.14	Cdip1	chr16	protein_coding	cell death inducing Trp53 target 1
known_NIR_7348	chr16	46258431	46268492	-	46258431	46274987	A5SS	ENSMUST00000023335.13	known	0.03	1	34	1	34	n	0.03	1	33	1	33	n	0.00	0	11	0	11	n	0.00	0	31	0	31	n	0.00	0	39	0	39	n	0.00	0	5	0	5	n	0.00	0	35	0	35	n	0.00	0	5	0	5	n	0.03	1	34	1	34	n	0.10	5	47	5	47	y	0.00	0	43	0	43	n	0.00	0	35	0	35	n	ENSMUSG00000022656.16	Nectin3	chr16	protein_coding	nectin cell adhesion molecule 3
known_NIR_7349	chr16	46269331	46274987	-	46258431	46274987	A3SS	ENSMUST00000023335.13	known	0.70	78	34	78	34	y	0.70	78	33	78	33	y	0.89	87	11	87	11	y	0.77	103	31	103	31	y	0.79	151	39	151	39	y	0.88	35	5	35	5	y	0.80	138	35	138	35	y	0.92	56	5	56	5	y	0.67	69	34	69	34	y	0.73	128	47	128	47	y	0.69	94	43	94	43	y	0.83	172	35	172	35	y	ENSMUSG00000022656.16	Nectin3	chr16	protein_coding	nectin cell adhesion molecule 3
known_NIR_7350	chr16	46278594	46284181	-	46278594;46279474	46279178;46284181	ES	ENSMUST00000023335.13	known	0.02	2	86.5	2	92;81	y	0.02	2	86.0	2	94;78	y	0.02	2	82.5	2	90;75	y	0.00	0	115.0	0	127;103	n	0.01	1	142.0	1	148;136	n	0.00	0	38.0	0	41;35	n	0.04	5	127.0	5	131;123	y	0.00	0	51.0	0	64;38	n	0.00	0	89.5	0	103;76	n	0.01	1	147.0	1	166;128	n	0.02	2	90.0	2	111;69	y	0.00	0	136.5	0	145;128	n	ENSMUSG00000022656.16	Nectin3	chr16	protein_coding	nectin cell adhesion molecule 3
known_NIR_7351	chr16	46278594	46284181	-	46279474	46284181	3pMXE	ENSMUST00000133935.2	known	0.02	2	81	2	81	y	0.03	2	78	2	78	y	0.03	2	75	2	75	y	0.00	0	103	0	103	n	0.01	1	136	1	136	n	0.00	0	35	0	35	n	0.04	5	123	5	123	y	0.00	0	38	0	38	n	0.00	0	76	0	76	n	0.01	1	128	1	128	n	0.03	2	69	2	69	y	0.00	0	128	0	128	n	ENSMUSG00000022656.16	Nectin3	chr16	protein_coding	nectin cell adhesion molecule 3
known_NIR_7352	chr16	46284522	46318754	-	46284522	46316978	5pMXE	ENSMUST00000023335.13	known	0.00	0	55	0	55	n	0.02	1	49	1	49	n	0.00	0	52	0	52	n	0.00	0	101	0	101	n	0.00	0	91	0	91	n	0.00	0	32	0	32	n	0.01	1	69	1	69	n	0.00	0	46	0	46	n	0.00	0	37	0	37	n	0.01	1	89	1	89	n	0.00	0	49	0	49	n	0.04	4	95	4	95	y	ENSMUSG00000022656.16	Nectin3	chr16	protein_coding	nectin cell adhesion molecule 3
known_NIR_7353	chr16	4704337	4725229	+	4704337	4725232	A3SS	ENSMUST00000023159.10	known	0.13	8	53	8	53	y	0.23	12	40	12	40	y	0.15	12	68	12	68	y	0.10	12	109	12	109	y	0.14	16	99	16	99	y	0.07	4	57	4	57	y	0.19	20	85	20	85	y	0.08	5	60	5	60	y	0.14	10	63	10	63	y	0.12	12	89	12	89	y	0.15	11	61	11	61	y	0.13	15	100	15	100	y	ENSMUSG00000022517.18	Mgrn1	chr16	protein_coding	mahogunin, ring finger 1
known_NIR_7354	chr16	4742396;4744238	4744173;4745539	+	4742396	4745539	cassetteExon	ENSMUST00000023159.10	known	0.48	47.0	51	44;50	51	y	0.55	59.0	48	57;61	48	y	0.44	59.5	76	52;67	76	y	0.56	64.5	51	61;68	51	y	0.59	96.0	67	86;106	67	y	0.54	44.0	38	39;49	38	y	0.56	101.0	80	78;124	80	y	0.56	40.0	31	37;43	31	y	0.51	48.5	46	45;52	46	y	0.51	84.5	81	69;100	81	y	0.56	67.5	52	67;68	52	y	0.48	76.5	82	61;92	82	y	ENSMUSG00000022517.18	Mgrn1	chr16	protein_coding	mahogunin, ring finger 1
known_NIR_7355	chr16	4750162	4754760	+	4750162	4752059	3pMXE	ENSMUST00000230990.2	known	0.66	69	35	69	35	y	0.49	39	40	39	40	y	0.58	51	37	51	37	y	0.55	66	54	66	54	y	0.69	101	45	101	45	y	0.58	45	33	45	33	y	0.52	61	57	61	57	y	0.71	62	25	62	25	y	0.57	42	32	42	32	y	0.50	60	61	60	61	y	0.60	50	34	50	34	y	0.54	60	51	60	51	y	ENSMUSG00000022517.18	Mgrn1	chr16	protein_coding	mahogunin, ring finger 1
known_NIR_7356	chr16	4750162;4752103	4752059;4754760	+	4750162	4754760	cassetteExon	ENSMUST00000023159.10	known	0.33	33.5	69	35;32	69	y	0.51	40.5	39	40;41	39	y	0.41	35.5	51	37;34	51	y	0.42	47.0	66	54;40	66	y	0.32	48.5	101	45;52	101	y	0.42	32.5	45	33;32	45	y	0.48	57.0	61	57;57	61	y	0.27	22.5	62	25;20	62	y	0.43	32.0	42	32;32	42	y	0.50	60.5	60	61;60	60	y	0.36	28.5	50	34;23	50	y	0.45	50.0	60	51;49	60	y	ENSMUSG00000022517.18	Mgrn1	chr16	protein_coding	mahogunin, ring finger 1
known_NIR_7357	chr16	4757577	4758060	+	4757502	4758060	A5SS	ENSMUST00000230931.2	known	0.04	2	50	2	50	y	0.02	1	45	1	45	n	0.02	1	51	1	51	n	0.00	0	72	0	72	n	0.04	3	72	3	72	y	0.00	0	23	0	23	n	0.04	2	53	2	53	y	0.08	2	24	2	24	y	0.00	0	43	0	43	n	0.03	2	69	2	69	y	0.04	2	50	2	50	y	0.06	3	47	3	47	y	ENSMUSG00000022516.11	Nudt16l1	chr16	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1
known_NIR_7358	chr16	4759661	4760075	-	4759661;4759851	4759763;4760075	ES	ENSMUST00000231036.2	known	0.08	3	34.0	3	37;31	y	0.12	4	29.5	4	29;30	y	0.17	7	33.5	7	42;25	y	0.00	0	32.0	0	36;28	n	0.16	5	26.5	5	28;25	y	0.15	3	16.5	3	19;14	y	0.07	4	51.0	4	55;47	y	0.18	4	18.0	4	15;21	y	0.23	4	13.5	4	19;8	y	0.11	5	40.5	5	50;31	y	0.16	6	32.0	6	31;33	y	0.17	5	24.5	5	28;21	y	ENSMUSG00000022515.7	Anks3	chr16	protein_coding	ankyrin repeat and sterile alpha motif domain containing 3
known_NIR_7359	chr16	4760158	4760557	-	4760129	4760557	A3SS	ENSMUST00000231036.2	known	1.00	38	0	38	0	n	0.90	28	3	28	3	y	1.00	52	0	52	0	n	1.00	33	0	33	0	n	1.00	57	0	57	0	n	1.00	23	0	23	0	n	1.00	43	0	43	0	n	1.00	30	0	30	0	n	1.00	16	0	16	0	n	1.00	47	0	47	0	n	1.00	46	0	46	0	n	1.00	41	0	41	0	n	ENSMUSG00000022515.7	Anks3	chr16	protein_coding	ankyrin repeat and sterile alpha motif domain containing 3
known_NIR_7360	chr16	4766227	4771683	-	4766227;4768632	4768477;4771683	ES	ENSMUST00000023157.6	known	0.00	0	24.5	0	22;27	n	0.05	1	17.5	1	19;16	n	0.05	2	35.0	2	34;36	y	0.00	0	23.0	0	28;18	n	0.00	0	30.0	0	32;28	n	0.00	0	16.5	0	18;15	n	0.10	2	19.0	2	17;21	y	0.00	0	17.0	0	13;21	n	0.00	0	12.5	0	14;11	n	0.00	0	32.0	0	29;35	n	0.00	0	14.5	0	10;19	n	0.00	0	21.0	0	21;21	n	ENSMUSG00000022515.7	Anks3	chr16	protein_coding	ankyrin repeat and sterile alpha motif domain containing 3
known_NIR_7361	chr16	4766227	4771683	-	4768632	4771683	3pMXE	ENSMUST00000230493.2	known	0.00	0	27	0	27	n	0.06	1	16	1	16	n	0.05	2	36	2	36	y	0.00	0	18	0	18	n	0.00	0	28	0	28	n	0.00	0	15	0	15	n	0.09	2	21	2	21	y	0.00	0	21	0	21	n	0.00	0	11	0	11	n	0.00	0	35	0	35	n	0.00	0	19	0	19	n	0.00	0	21	0	21	n	ENSMUSG00000022515.7	Anks3	chr16	protein_coding	ankyrin repeat and sterile alpha motif domain containing 3
known_NIR_7362	chr16	4772740	4773722	-	4771818	4773722	A3SS	ENSMUST00000023157.6	known	0.12	3	22	3	22	y	0.14	4	24	4	24	y	0.07	3	40	3	40	y	0.06	1	17	1	17	n	0.03	1	33	1	33	n	0.11	2	16	2	16	y	0.03	1	38	1	38	n	0.04	1	25	1	25	n	0.00	0	12	0	12	n	0.04	2	47	2	47	y	0.00	0	18	0	18	n	0.00	0	21	0	21	n	ENSMUSG00000022515.7	Anks3	chr16	protein_coding	ankyrin repeat and sterile alpha motif domain containing 3
known_NIR_7363	chr16	4773803;4774483	4774414;4775505	-	4773803	4775505	cassetteExon	ENSMUST00000023157.6	known	0.03	0.5	15	1;0	15	n	0.23	4.5	15	5;4	15	y	0.08	3.0	33	6;0	33	n	0.13	3.0	20	1;5	20	n	0.07	2.0	25	4;0	25	n	0.06	1.0	15	1;1	15	n	0.00	0.0	26	0;0	26	n	0.10	2.0	18	1;3	18	n	0.05	1.0	18	1;1	18	n	0.03	1.0	29	0;2	29	n	0.02	0.5	22	1;0	22	n	0.05	1.0	18	2;0	18	n	ENSMUSG00000022515.7	Anks3	chr16	protein_coding	ankyrin repeat and sterile alpha motif domain containing 3
known_NIR_7364	chr16	4776030	4781984	-	4776030;4778432	4778261;4781984	ES	ENSMUST00000023157.6	known	0.00	0	15.0	0	12;18	n	0.00	0	10.0	0	10;10	n	0.00	0	23.0	0	25;21	n	0.00	0	17.5	0	20;15	n	0.00	0	19.5	0	15;24	n	0.13	1	6.5	1	10;3	n	0.00	0	10.0	0	12;8	n	0.00	0	11.0	0	5;17	n	0.14	2	12.0	2	13;11	y	0.00	0	21.0	0	21;21	n	0.00	0	15.0	0	17;13	n	0.00	0	24.5	0	31;18	n	ENSMUSG00000022515.7	Anks3	chr16	protein_coding	ankyrin repeat and sterile alpha motif domain containing 3
known_NIR_7365	chr16	4776030	4781984	-	4778432	4781984	3pMXE	ENSMUST00000229077.2	known	0.00	0	18	0	18	n	0.00	0	10	0	10	n	0.00	0	21	0	21	n	0.00	0	15	0	15	n	0.00	0	24	0	24	n	0.25	1	3	1	3	n	0.00	0	8	0	8	n	0.00	0	17	0	17	n	0.15	2	11	2	11	y	0.00	0	21	0	21	n	0.00	0	13	0	13	n	0.00	0	18	0	18	n	ENSMUSG00000022515.7	Anks3	chr16	protein_coding	ankyrin repeat and sterile alpha motif domain containing 3
known_NIR_7366	chr16	4778432	4781984	-	4775626	4781984	A3SS	ENSMUST00000230771.2	known	0.95	18	1	18	1	n	0.91	10	1	10	1	n	0.81	21	5	21	5	y	0.83	15	3	15	3	y	0.89	24	3	24	3	y	1.00	3	0	3	0	n	1.00	8	0	8	0	n	1.00	17	0	17	0	n	0.92	11	1	11	1	n	0.91	21	2	21	2	y	0.81	13	3	13	3	y	0.90	18	2	18	2	y	ENSMUSG00000022515.7	Anks3	chr16	protein_coding	ankyrin repeat and sterile alpha motif domain containing 3
known_NIR_7367	chr16	4825282	4825608	+	4825189	4825608	A5SS	ENSMUST00000184439.8	known	0.85	11	2	11	2	y	0.44	7	9	7	9	y	0.64	9	5	9	5	y	0.67	14	7	14	7	y	0.75	9	3	9	3	y	0.50	2	2	2	2	n	0.75	6	2	6	2	n	0.40	6	9	6	9	y	0.79	11	3	11	3	y	0.75	9	3	9	3	y	0.53	10	9	10	9	y	0.86	6	1	6	1	n	ENSMUSG00000096215.9	Smim22	chr16	protein_coding	small integral membrane protein 22
known_NIR_7368	chr16	4825282	4825608	+	4825282	4825638	A3SS	ENSMUST00000183821.2	known	0.73	11	4	11	4	y	1.00	7	0	7	0	n	1.00	9	0	9	0	n	1.00	14	0	14	0	n	1.00	9	0	9	0	n	1.00	2	0	2	0	n	1.00	6	0	6	0	n	1.00	6	0	6	0	n	0.79	11	3	11	3	y	0.69	9	4	9	4	y	1.00	10	0	10	0	n	1.00	6	0	6	0	n	ENSMUSG00000096215.9	Smim22	chr16	protein_coding	small integral membrane protein 22
known_NIR_7369	chr16	4825282	4825836	+	4825282;4825752	4825608;4825836	ES	ENSMUST00000178155.9	known	0.03	1	38.5	1	11;66	n	0.02	1	41.0	1	7;75	n	0.00	0	19.0	0	9;29	n	0.06	2	33.0	2	14;52	y	0.07	3	39.0	3	9;69	y	0.00	0	7.5	0	2;13	n	0.08	2	24.5	2	6;43	y	0.00	0	14.5	0	6;23	n	0.00	0	34.5	0	11;58	n	0.00	0	30.5	0	9;52	n	0.03	1	30.0	1	10;50	n	0.00	0	21.5	0	6;37	n	ENSMUSG00000096215.9	Smim22	chr16	protein_coding	small integral membrane protein 22
known_NIR_7370	chr16	4825282	4825836	+	4825752	4825836	A5SS&ES	ENSMUST00000184439.8	known	0.01	1	66	1	66	n	0.01	1	75	1	75	n	0.00	0	29	0	29	n	0.04	2	52	2	52	y	0.04	3	69	3	69	y	0.00	0	13	0	13	n	0.04	2	43	2	43	y	0.00	0	23	0	23	n	0.00	0	58	0	58	n	0.00	0	52	0	52	n	0.02	1	50	1	50	n	0.00	0	37	0	37	n	ENSMUSG00000096215.9	Smim22	chr16	protein_coding	small integral membrane protein 22
known_NIR_7371	chr16	4825918	4826070	+	4825933	4826070	A5SS	ENSMUST00000184439.8	known	0.83	43	9	43	9	y	0.87	53	8	53	8	y	0.73	19	7	19	7	y	0.90	27	3	27	3	y	0.77	43	13	43	13	y	0.67	10	5	10	5	y	0.81	21	5	21	5	y	0.95	18	1	18	1	n	0.76	26	8	26	8	y	0.85	33	6	33	6	y	0.81	39	9	39	9	y	0.78	18	5	18	5	y	ENSMUSG00000096215.9	Smim22	chr16	protein_coding	small integral membrane protein 22
known_NIR_7372	chr16	4828760	4829476	-	4828806	4829476	A3SS	ENSMUST00000202281.4	known	0.01	1	88	1	88	n	0.00	0	67	0	67	n	0.00	0	77	0	77	n	0.05	5	91	5	91	y	0.03	5	150	5	150	y	0.00	0	40	0	40	n	0.03	3	97	3	97	y	0.02	1	63	1	63	n	0.03	2	62	2	62	y	0.01	1	88	1	88	n	0.05	4	71	4	71	y	0.00	0	46	0	46	n	ENSMUSG00000022540.17	Rogdi	chr16	protein_coding	rogdi homolog
known_NIR_7373	chr16	4839294	4844372	-	4839312	4844372	A3SS	ENSMUST00000115844.3	known	0.27	24	64	24	64	y	0.26	20	56	20	56	y	0.48	60	66	60	66	y	0.26	32	92	32	92	y	0.25	30	91	30	91	y	0.55	40	33	40	33	y	0.29	31	77	31	77	y	0.22	16	58	16	58	y	0.25	19	58	19	58	y	0.29	36	87	36	87	y	0.26	19	55	19	55	y	0.26	24	70	24	70	y	ENSMUSG00000022536.15	Glyr1	chr16	protein_coding	glyoxylate reductase 1 homolog (Arabidopsis)
known_NIR_7374	chr16	4868645;4871705	4871592;4872941	+	4868645	4872941	cassetteExon	ENSMUST00000230703.2	known	0.18	1.5	7	2;1	7	n	0.11	0.5	4	1;0	4	n	0.14	2.5	16	2;3	16	y	0.18	2.0	9	1;3	9	n	0.11	2.0	17	0;4	17	n	0.33	4.0	8	2;6	8	y	0.14	1.0	6	1;1	6	n	0.05	0.5	9	0;1	9	n	0.11	1.0	8	1;1	8	n	0.23	3.5	12	4;3	12	y	0.00	0.0	6	0;0	6	n	0.19	2.5	11	2;3	11	y	ENSMUSG00000039473.9	Ubn1	chr16	protein_coding	ubinuclein 1
known_NIR_7375	chr16	4882650	4888414	+	4882650	4888513	A3SS	ENSMUST00000230703.2	known	0.00	0	18	0	18	n	0.00	0	7	0	7	n	0.00	0	50	0	50	n	0.04	1	25	1	25	n	0.04	1	26	1	26	n	0.00	0	21	0	21	n	0.00	0	19	0	19	n	0.00	0	11	0	11	n	0.05	1	19	1	19	n	0.07	2	25	2	25	y	0.00	0	19	0	19	n	0.00	0	17	0	17	n	ENSMUSG00000039473.9	Ubn1	chr16	protein_coding	ubinuclein 1
known_NIR_7376	chr16	4899525	4901920	+	4899525;4899847	4899758;4901920	ES	ENSMUST00000230703.2	known	0.59	24	17.0	24	19;15	y	0.74	27	9.5	27	3;16	y	0.37	17	29.5	17	40;19	y	0.57	18	13.5	18	9;18	y	0.49	26	27.5	26	25;30	y	0.45	17	21.0	17	17;25	y	0.58	30	21.5	30	25;18	y	0.53	16	14.0	16	10;18	y	0.63	18	10.5	18	10;11	y	0.47	21	23.5	21	17;30	y	0.62	23	14.0	23	14;14	y	0.62	21	13.0	21	15;11	y	ENSMUSG00000039473.9	Ubn1	chr16	protein_coding	ubinuclein 1
known_NIR_7377	chr16	49676195	49688128	+	49675760	49688128	A5SS	ENSMUST00000114496.3	known	0.99	83	1	83	1	n	1.00	79	0	79	0	n	0.98	179	4	179	4	y	1.00	118	0	118	0	n	0.99	165	2	165	2	y	1.00	110	0	110	0	n	1.00	117	0	117	0	n	1.00	88	0	88	0	n	1.00	88	0	88	0	n	1.00	152	0	152	0	n	1.00	93	0	93	0	n	1.00	151	0	151	0	n	ENSMUSG00000055447.20	Cd47	chr16	protein_coding	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)
known_NIR_7378	chr16	49687270	49688128	+	49676195	49688128	A5SS	ENSMUST00000229101.2	known	0.07	6	83	6	83	y	0.02	2	79	2	79	y	0.01	2	179	2	179	y	0.01	1	118	1	118	n	0.04	7	165	7	165	y	0.00	0	110	0	110	n	0.03	3	117	3	117	y	0.02	2	88	2	88	y	0.01	1	88	1	88	n	0.00	0	152	0	152	n	0.01	1	93	1	93	n	0.01	1	151	1	151	n	ENSMUSG00000055447.20	Cd47	chr16	protein_coding	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)
known_NIR_7379	chr16	49688475	49704528	+	49688475;49689443	49689381;49704528	ES	ENSMUST00000229640.2	known	0.62	114	71.0	114	76;66	y	0.72	102	40.5	102	35;46	y	0.63	192	112.0	192	109;115	y	0.62	100	62.5	100	69;56	y	0.57	174	130.5	174	146;115	y	0.61	102	66.0	102	66;66	y	0.63	165	97.0	165	108;86	y	0.61	84	53.5	84	54;53	y	0.75	101	33.5	101	30;37	y	0.75	183	62.0	183	57;67	y	0.65	110	59.0	110	52;66	y	0.70	200	84.0	200	86;82	y	ENSMUSG00000055447.20	Cd47	chr16	protein_coding	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)
known_NIR_7380	chr16	49718495;49720263	49720219;49727144	+	49718495	49727144	cassetteExon	ENSMUST00000229640.2	known	0.00	0.5	211	0;1	211	n	0.00	0.5	200	0;1	200	n	0.01	3.5	362	3;4	362	y	0.00	0.0	196	0;0	196	n	0.00	0.0	331	0;0	331	n	0.00	0.5	186	1;0	186	n	0.01	2.0	310	3;1	310	n	0.00	0.5	159	1;0	159	n	0.01	1.0	182	1;1	182	n	0.00	0.5	256	1;0	256	n	0.00	1.0	225	1;1	225	n	0.00	0.0	276	0;0	276	n	ENSMUSG00000055447.20	Cd47	chr16	protein_coding	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)
known_NIR_7381	chr16	49727175	49731232	+	49727175	49728417	A3SS&ES	ENSMUST00000230281.2	known	0.62	136	83	136	83	y	0.53	101	89	101	89	y	0.66	217	113	217	113	y	0.53	108	96	108	96	y	0.61	191	124	191	124	y	0.62	122	76	122	76	y	0.62	209	127	209	127	y	0.67	108	54	108	54	y	0.53	102	92	102	92	y	0.61	157	99	157	99	y	0.55	126	103	126	103	y	0.57	164	126	164	126	y	ENSMUSG00000055447.20	Cd47	chr16	protein_coding	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)
known_NIR_7382	chr16	49727175;49728441	49728417;49731232	+	49727175	49731232	cassetteExon	ENSMUST00000229640.2	known	0.36	78.0	136	83;73	136	y	0.45	81.5	101	89;74	101	y	0.32	102.0	217	113;91	217	y	0.44	86.5	108	96;77	108	y	0.38	115.0	191	124;106	191	y	0.35	66.5	122	76;57	122	y	0.36	117.5	209	127;108	209	y	0.32	51.5	108	54;49	108	y	0.46	86.5	102	92;81	102	y	0.39	99.0	157	99;99	157	y	0.44	100.0	126	103;97	126	y	0.42	118.0	164	126;110	164	y	ENSMUSG00000055447.20	Cd47	chr16	protein_coding	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)
known_NIR_7383	chr16	49728441;49729098	49729066;49731232	+	49728441	49731232	cassetteExon	ENSMUST00000229101.2	known	0.01	1.0	73	2;0	73	n	0.06	5.0	74	4;6	74	y	0.10	10.5	91	7;14	91	y	0.10	8.5	77	6;11	77	y	0.01	1.0	106	0;2	106	n	0.01	0.5	57	1;0	57	n	0.01	1.0	108	2;0	108	n	0.08	4.0	49	3;5	49	y	0.00	0.0	81	0;0	81	n	0.01	1.0	99	0;2	99	n	0.04	4.0	97	2;6	97	y	0.02	2.0	110	2;2	110	y	ENSMUSG00000055447.20	Cd47	chr16	protein_coding	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)
known_NIR_7384	chr16	49729098	49731232	+	49727175	49731232	A5SS	ENSMUST00000229640.2	known	0.00	0	136	0	136	n	0.06	6	101	6	101	y	0.06	14	217	14	217	y	0.09	11	108	11	108	y	0.01	2	191	2	191	y	0.00	0	122	0	122	n	0.00	0	209	0	209	n	0.04	5	108	5	108	y	0.00	0	102	0	102	n	0.01	2	157	2	157	y	0.05	6	126	6	126	y	0.01	2	164	2	164	y	ENSMUSG00000055447.20	Cd47	chr16	protein_coding	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)
known_NIR_7385	chr16	50022938	50040808	-	50022938;50029507	50029448;50040808	ES	ENSMUST00000138166.8	known	0.00	0	5.5	0	7;4	n	0.00	0	3.0	0	4;2	n	0.00	0	8.5	0	9;8	n	0.00	0	5.0	0	7;3	n	0.00	0	5.5	0	8;3	n	0.00	0	5.0	0	8;2	n	0.00	0	6.0	0	10;2	n	0.40	3	4.5	3	5;4	y	0.00	0	3.0	0	5;1	n	0.29	1	2.5	1	3;2	n	0.00	0	1.0	0	2;0	n	0.00	0	2.0	0	3;1	n	ENSMUSG00000022641.16	Bbx	chr16	protein_coding	bobby sox HMG box containing
known_NIR_7386	chr16	50029507	50040808	-	50030897	50040808	3pMXE	ENSMUST00000089399.11	known	0.57	4	3	4	3	n	1.00	2	0	2	0	n	0.73	8	3	8	3	y	0.43	3	4	3	4	n	0.30	3	7	3	7	y	0.40	2	3	2	3	n	0.14	2	12	2	12	y	0.57	4	3	4	3	n	0.33	1	2	1	2	n	0.50	2	2	2	2	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	ENSMUSG00000022641.16	Bbx	chr16	protein_coding	bobby sox HMG box containing
known_NIR_7387	chr16	50029507;50030897	50030808;50040808	-	50029507	50040808	cassetteExon	ENSMUST00000138166.8	known	0.47	3.5	4	4;3	4	y	0.00	0.0	2	0;0	2	n	0.24	2.5	8	2;3	8	y	0.67	6.0	3	8;4	3	y	0.70	7.0	3	7;7	3	y	0.60	3.0	2	3;3	2	n	0.80	8.0	2	4;12	2	y	0.47	3.5	4	4;3	4	y	0.67	2.0	1	2;2	1	n	0.43	1.5	2	1;2	2	n	1.00	1.5	0	2;1	0	n	0.75	3.0	1	4;2	1	n	ENSMUSG00000022641.16	Bbx	chr16	protein_coding	bobby sox HMG box containing
known_NIR_7388	chr16	50100902	50151197	-	50100902	50151392	A5SS	ENSMUST00000138166.8	known	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.25	3	9	3	9	y	0.00	0	6	0	6	n	0.31	4	9	4	9	y	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	2	4	2	4	n	ENSMUSG00000022641.16	Bbx	chr16	protein_coding	bobby sox HMG box containing
known_NIR_7389	chr16	50100902;50140776	50140663;50151392	-	50100902	50151392	cassetteExon	ENSMUST00000138166.8	known	0.00	0.0	1	0;0	1	n	0.00	0.0	2	0;0	2	n	0.18	2.0	9	2;2	9	y	0.00	0.0	6	0;0	6	n	0.00	0.0	9	0;0	9	n	0.00	0.0	6	0;0	6	n	0.00	0.0	1	0;0	1	n	0.56	2.5	2	1;4	2	n	0.14	0.5	3	0;1	3	n	0.50	1.0	1	1;1	1	n	-	-	-	-	-	-	0.00	0.0	4	0;0	4	n	ENSMUSG00000022641.16	Bbx	chr16	protein_coding	bobby sox HMG box containing
known_NIR_7390	chr16	5013835	5015419	-	5013922	5015419	A3SS	ENSMUST00000147567.2	known	0.00	0	49	0	49	n	0.07	3	42	3	42	y	0.00	0	39	0	39	n	0.08	4	45	4	45	y	0.01	1	71	1	71	n	0.00	0	27	0	27	n	0.04	2	54	2	54	y	0.00	0	16	0	16	n	0.08	3	36	3	36	y	0.06	4	65	4	65	y	0.11	7	55	7	55	y	0.04	2	47	2	47	y	ENSMUSG00000023143.11	Nagpa	chr16	protein_coding	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase
known_NIR_7391	chr16	5053130	5056509	+	5053130;5054332	5054184;5056509	ES	ENSMUST00000100196.9	known	0.00	0	53.0	0	48;58	n	0.00	0	51.0	0	48;54	n	0.00	0	73.5	0	73;74	n	0.00	0	75.5	0	64;87	n	0.00	0	69.0	0	64;74	n	0.00	0	51.5	0	59;44	n	0.00	0	66.5	0	62;71	n	0.00	0	44.0	0	43;45	n	0.00	0	45.0	0	44;46	n	0.00	0	80.0	0	74;86	n	0.00	0	53.0	0	45;61	n	0.02	2	80.0	2	83;77	y	ENSMUSG00000039427.15	Alg1	chr16	protein_coding	asparagine-linked glycosylation 1 (beta-1,4-mannosyltransferase)
known_NIR_7392	chr16	5066694	5067211	-	5066694;5066909	5066776;5067211	ES	ENSMUST00000064635.12	known	0.07	2	26.0	2	24;28	y	0.07	2	27.5	2	30;25	y	0.07	3	43.0	3	40;46	y	0.14	4	24.0	4	23;25	y	0.13	7	47.5	7	53;42	y	0.00	0	33.5	0	31;36	n	0.09	4	39.0	4	37;41	y	0.08	3	35.5	3	34;37	y	0.15	3	17.5	3	15;20	y	0.03	1	30.0	1	27;33	n	0.03	1	28.0	1	24;32	n	0.00	0	31.0	0	29;33	n	ENSMUSG00000022544.15	Eef2kmt	chr16	protein_coding	eukaryotic elongation factor 2 lysine methyltransferase
known_NIR_7393	chr16	51852048;51852622	51852541;51853372	+	51852048	51853372	cassetteExon	ENSMUST00000114471.3	known	0.00	0.0	1	0;0	1	n	1.00	1.5	0	2;1	0	n	0.64	7.0	4	6;8	4	y	0.00	0.0	5	0;0	5	n	0.11	0.5	4	0;1	4	n	0.54	3.5	3	3;4	3	y	0.50	2.0	2	2;2	2	n	0.38	2.5	4	0;5	4	n	0.33	1.0	2	0;2	2	n	0.50	1.0	1	0;2	1	n	-	-	-	-	-	-	1.00	1.0	0	0;2	0	n	ENSMUSG00000022637.12	Cblb	chr16	protein_coding	Casitas B-lineage lymphoma b
known_NIR_7394	chr16	52006595;52006843	52006712;52009376	+	52006595	52009376	cassetteExon	ENSMUST00000114471.3	known	0.71	2.5	1	3;2	1	n	0.75	3.0	1	2;4	1	n	0.43	3.0	4	4;2	4	y	0.67	4.0	2	4;4	2	y	0.67	4.0	2	4;4	2	y	1.00	4.5	0	4;5	0	n	0.33	2.0	4	1;3	4	n	1.00	6.5	0	8;5	0	n	0.17	1.0	5	1;1	5	n	0.00	0.0	2	0;0	2	n	0.50	3.0	3	3;3	3	n	1.00	4.0	0	2;6	0	n	ENSMUSG00000022637.12	Cblb	chr16	protein_coding	Casitas B-lineage lymphoma b
known_NIR_7395	chr16	52088862	52091010	-	52088862	52089153	5pMXE	ENSMUST00000163788.8	known	0.00	0	85	0	85	n	0.00	0	42	0	42	n	0.00	0	231	0	231	n	0.00	0	69	0	69	n	0.00	0	116	0	116	n	0.00	0	103	0	103	n	0.00	0	103	0	103	n	0.00	0	101	0	101	n	0.00	0	54	0	54	n	0.01	1	99	1	99	n	0.05	2	42	2	42	y	0.00	0	115	0	115	n	ENSMUSG00000022636.14	Alcam	chr16	protein_coding	activated leukocyte cell adhesion molecule
known_NIR_7396	chr16	52088862	52091010	-	52088862;52089191	52089153;52091010	ES	ENSMUST00000023312.14	known	0.00	0	80.5	0	85;76	n	0.00	0	42.0	0	42;42	n	0.00	0	246.0	0	231;261	n	0.00	0	75.0	0	69;81	n	0.00	0	118.0	0	116;120	n	0.00	0	114.0	0	103;125	n	0.00	0	101.5	0	103;100	n	0.00	0	109.0	0	101;117	n	0.00	0	54.0	0	54;54	n	0.01	1	102.5	1	99;106	n	0.04	2	44.5	2	42;47	y	0.00	0	113.5	0	115;112	n	ENSMUSG00000022636.14	Alcam	chr16	protein_coding	activated leukocyte cell adhesion molecule
known_NIR_7397	chr16	55640069	55656684	-	55640069	55642131	5pMXE	ENSMUST00000114458.8	known	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	31	0	31	n	0.00	0	9	0	9	n	0.05	2	36	2	36	y	0.14	2	12	2	12	y	0.00	0	12	0	12	n	0.17	6	30	6	30	y	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000035356.18	Nfkbiz	chr16	protein_coding	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta
known_NIR_7398	chr16	55745042	55745332	-	55743403	55745332	A3SS	ENSMUST00000023270.14	known	0.57	4	3	4	3	n	0.60	3	2	3	2	n	0.54	7	6	7	6	y	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.50	2	2	2	2	n	0.42	5	7	5	7	y	0.00	0	3	0	3	n	0.50	2	2	2	2	n	0.50	3	3	3	3	n	1.00	1	0	1	0	n	0.00	0	6	0	6	n	ENSMUSG00000022604.19	Cep97	chr16	protein_coding	centrosomal protein 97
known_NIR_7399	chr16	55844749	55849966	-	55838890	55849966	A3SS	ENSMUST00000140227.2	known	1.00	6	0	6	0	n	0.93	13	1	13	1	n	0.92	23	2	23	2	y	0.94	15	1	15	1	n	0.92	34	3	34	3	y	0.92	11	1	11	1	n	0.88	21	3	21	3	y	0.88	15	2	15	2	y	1.00	8	0	8	0	n	1.00	26	0	26	0	n	0.94	15	1	15	1	n	0.91	20	2	20	2	y	ENSMUSG00000071533.12	Pcnp	chr16	protein_coding	PEST proteolytic signal containing nuclear protein
known_NIR_7400	chr16	55844801	55849966	-	55838890	55849966	A3SS	ENSMUST00000140227.2	known	1.00	104	0	104	0	n	0.99	66	1	66	1	n	0.98	117	2	117	2	y	0.99	95	1	95	1	n	0.98	132	3	132	3	y	0.98	49	1	49	1	n	0.98	127	3	127	3	y	0.96	51	2	51	2	y	1.00	82	0	82	0	n	1.00	89	0	89	0	n	0.99	78	1	78	1	n	0.98	103	2	103	2	y	ENSMUSG00000071533.12	Pcnp	chr16	protein_coding	PEST proteolytic signal containing nuclear protein
known_NIR_7401	chr16	55844801	55849966	-	55844749	55849966	A3SS	ENSMUST00000125040.8	known	0.95	104	6	104	6	y	0.84	66	13	66	13	y	0.84	117	23	117	23	y	0.86	95	15	95	15	y	0.80	132	34	132	34	y	0.82	49	11	49	11	y	0.86	127	21	127	21	y	0.77	51	15	51	15	y	0.91	82	8	82	8	y	0.77	89	26	89	26	y	0.84	78	15	78	15	y	0.84	103	20	103	20	y	ENSMUSG00000071533.12	Pcnp	chr16	protein_coding	PEST proteolytic signal containing nuclear protein
known_NIR_7402	chr16	55844801	55849966	-	55844801	55844897	5pMXE	ENSMUST00000096021.10	known	1.00	104	0	104	0	n	1.00	66	0	66	0	n	1.00	117	0	117	0	n	1.00	95	0	95	0	n	1.00	132	0	132	0	n	0.98	49	1	49	1	n	0.95	127	6	127	6	y	1.00	51	0	51	0	n	0.99	82	1	82	1	n	1.00	89	0	89	0	n	1.00	78	0	78	0	n	1.00	103	0	103	0	n	ENSMUSG00000071533.12	Pcnp	chr16	protein_coding	PEST proteolytic signal containing nuclear protein
known_NIR_7403	chr16	55844801	55849966	-	55845000	55849966	A3SS	ENSMUST00000130818.8	known	0.95	104	6	104	6	y	0.89	66	8	66	8	y	0.97	117	4	117	4	y	0.91	95	9	95	9	y	0.94	132	9	132	9	y	0.96	49	2	49	2	y	0.96	127	5	127	5	y	0.89	51	6	51	6	y	1.00	82	0	82	0	n	0.88	89	12	89	12	y	0.83	78	16	78	16	y	0.93	103	8	103	8	y	ENSMUSG00000071533.12	Pcnp	chr16	protein_coding	PEST proteolytic signal containing nuclear protein
known_NIR_7404	chr16	55844801;55845000	55844897;55849966	-	55844801	55849966	cassetteExon	ENSMUST00000114444.9	known	0.03	3.0	104	0;6	104	n	0.06	4.0	66	0;8	66	n	0.02	2.0	117	0;4	117	n	0.05	4.5	95	0;9	95	n	0.03	4.5	132	0;9	132	n	0.03	1.5	49	1;2	49	n	0.04	5.5	127	6;5	127	y	0.06	3.0	51	0;6	51	n	0.01	0.5	82	1;0	82	n	0.06	6.0	89	0;12	89	n	0.09	8.0	78	0;16	78	n	0.04	4.0	103	0;8	103	n	ENSMUSG00000071533.12	Pcnp	chr16	protein_coding	PEST proteolytic signal containing nuclear protein
known_NIR_7405	chr16	55845000	55849966	-	55838890	55849966	A3SS	ENSMUST00000140227.2	known	1.00	6	0	6	0	n	0.89	8	1	8	1	n	0.67	4	2	4	2	n	0.90	9	1	9	1	n	0.75	9	3	9	3	y	0.67	2	1	2	1	n	0.62	5	3	5	3	n	0.75	6	2	6	2	n	-	-	-	-	-	-	1.00	12	0	12	0	n	0.94	16	1	16	1	n	0.80	8	2	8	2	y	ENSMUSG00000071533.12	Pcnp	chr16	protein_coding	PEST proteolytic signal containing nuclear protein
known_NIR_7406	chr16	55845000	55849966	-	55844749	55849966	A3SS	ENSMUST00000125040.8	known	0.50	6	6	6	6	y	0.38	8	13	8	13	y	0.15	4	23	4	23	y	0.38	9	15	9	15	y	0.21	9	34	9	34	y	0.15	2	11	2	11	y	0.19	5	21	5	21	y	0.29	6	15	6	15	y	0.00	0	8	0	8	n	0.32	12	26	12	26	y	0.52	16	15	16	15	y	0.29	8	20	8	20	y	ENSMUSG00000071533.12	Pcnp	chr16	protein_coding	PEST proteolytic signal containing nuclear protein
known_NIR_7407	chr16	55895941	55902719	+	55895941	55896506	3pMXE	ENSMUST00000201218.2	known	0.67	6	3	6	3	n	0.83	5	1	5	1	n	0.40	4	6	4	6	y	0.93	13	1	13	1	n	0.47	9	10	9	10	y	0.43	3	4	3	4	n	0.79	11	3	11	3	y	0.50	3	3	3	3	n	0.50	3	3	3	3	n	0.60	6	4	6	4	y	0.58	7	5	7	5	y	0.53	8	7	8	7	y	ENSMUSG00000052917.16	Senp7	chr16	protein_coding	SUMO1/sentrin specific peptidase 7
known_NIR_7408	chr16	55902771;55909827	55909747;55917703	+	55902771	55917703	cassetteExon	ENSMUST00000089360.10	known	1.00	5.0	0	5;5	0	n	0.50	2.0	2	4;0	2	n	1.00	3.5	0	0;7	0	n	0.81	8.5	2	10;7	2	y	1.00	5.0	0	3;7	0	n	0.80	4.0	1	4;4	1	n	0.50	6.0	6	6;6	6	y	0.67	4.0	2	4;4	2	y	0.67	4.0	2	4;4	2	y	0.83	5.0	1	5;5	1	n	1.00	6.5	0	8;5	0	n	0.64	7.0	4	6;8	4	y	ENSMUSG00000052917.16	Senp7	chr16	protein_coding	SUMO1/sentrin specific peptidase 7
known_NIR_7409	chr16	56000941	56005124	+	56000941;56004553	56004510;56005124	ES	ENSMUST00000089360.10	known	0.00	0	6.0	0	8;4	n	0.00	0	11.0	0	11;11	n	0.00	0	11.5	0	11;12	n	0.15	1	5.5	1	5;6	n	0.00	0	7.0	0	7;7	n	0.00	0	2.5	0	2;3	n	0.00	0	3.0	0	3;3	n	-	-	-	-	-	-	0.00	0	3.0	0	4;2	n	0.20	2	8.0	2	6;10	y	0.00	0	5.0	0	4;6	n	0.00	0	8.5	0	9;8	n	ENSMUSG00000052917.16	Senp7	chr16	protein_coding	SUMO1/sentrin specific peptidase 7
known_NIR_7410	chr16	56000941	56005124	+	56004553	56005124	5pMXE	ENSMUST00000202272.4	known	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.14	1	6	1	6	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.17	2	10	2	10	y	0.00	0	6	0	6	n	0.00	0	8	0	8	n	ENSMUSG00000052917.16	Senp7	chr16	protein_coding	SUMO1/sentrin specific peptidase 7
known_NIR_7411	chr16	56511516;56512279	56512239;56514763	-	56511516	56514763	cassetteExon	ENSMUST00000065515.14	known	0.00	0.5	114	1;0	114	n	0.00	0.5	122	1;0	122	n	0.00	0.5	204	1;0	204	n	0.00	0.0	94	0;0	94	n	0.00	0.0	187	0;0	187	n	0.00	0.0	87	0;0	87	n	0.00	0.5	128	1;0	128	n	0.02	2.5	104	2;3	104	y	0.00	0.0	94	0;0	94	n	0.01	1.0	113	2;0	113	n	0.00	0.0	127	0;0	127	n	0.00	0.0	122	0;0	122	n	ENSMUSG00000022757.20	Tfg	chr16	protein_coding	Trk-fused gene
known_NIR_7412	chr16	56533203	56537599	-	56533203	56537548	A5SS	ENSMUST00000065515.14	known	0.00	0	43	0	43	n	0.00	0	30	0	30	n	0.00	0	95	0	95	n	0.00	0	50	0	50	n	0.00	0	81	0	81	n	0.00	0	47	0	47	n	0.00	0	33	0	33	n	0.00	0	55	0	55	n	0.00	0	32	0	32	n	0.00	0	55	0	55	n	0.00	0	36	0	36	n	0.03	2	61	2	61	y	ENSMUSG00000022757.20	Tfg	chr16	protein_coding	Trk-fused gene
known_NIR_7413	chr16	56977995	56979781	-	56977902	56979781	A3SS	ENSMUST00000023432.10	known	0.03	18	669	18	669	y	0.04	28	742	28	742	y	0.03	5	142	5	142	y	0.03	23	654	23	654	y	0.03	21	673	21	673	y	0.01	2	148	2	148	y	0.02	11	697	11	697	y	0.01	3	230	3	230	y	0.03	22	819	22	819	y	0.03	30	1119	30	1119	y	0.02	14	908	14	908	y	0.01	12	1047	12	1047	y	ENSMUSG00000022751.10	Nit2	chr16	protein_coding	nitrilase family, member 2
known_NIR_7414	chr16	56981567	56983881	-	56981567;56982147	56982054;56983881	ES	ENSMUST00000023432.10	known	0.00	0	678.5	0	752;605	n	0.00	0	628.5	0	697;560	n	0.00	0	153.0	0	156;150	n	0.00	3	751.0	3	829;673	y	0.00	0	670.5	0	742;599	n	0.00	0	128.5	0	145;112	n	0.00	3	732.5	3	788;677	y	0.00	1	213.0	1	221;205	n	0.00	1	756.5	1	848;665	n	0.01	6	1147.0	6	1294;1000	y	0.01	5	848.5	5	932;765	y	0.00	3	989.0	3	1099;879	y	ENSMUSG00000022751.10	Nit2	chr16	protein_coding	nitrilase family, member 2
known_NIR_7415	chr16	56998383	57003214	-	57001899	57003214	3pMXE	ENSMUST00000226486.2	known	0.81	17	4	17	4	y	0.92	11	1	11	1	n	0.95	37	2	37	2	y	1.00	21	0	21	0	n	0.91	21	2	21	2	y	0.85	11	2	11	2	y	0.65	11	6	11	6	y	1.00	11	0	11	0	n	1.00	16	0	16	0	n	1.00	21	0	21	0	n	0.88	7	1	7	1	n	0.94	16	1	16	1	n	ENSMUSG00000022749.9	Tbc1d23	chr16	protein_coding	TBC1 domain family, member 23
known_NIR_7416	chr16	56998383;57001899	57001855;57003214	-	56998383	57003214	cassetteExon	ENSMUST00000023431.8	known	0.15	3.0	17	2;4	17	y	0.04	0.5	11	0;1	11	n	0.06	2.5	37	3;2	37	y	0.02	0.5	21	1;0	21	n	0.11	2.5	21	3;2	21	y	0.12	1.5	11	1;2	11	n	0.37	6.5	11	7;6	11	y	0.00	0.0	11	0;0	11	n	0.03	0.5	16	1;0	16	n	0.00	0.0	21	0;0	21	n	0.12	1.0	7	1;1	7	n	0.09	1.5	16	2;1	16	n	ENSMUSG00000022749.9	Tbc1d23	chr16	protein_coding	TBC1 domain family, member 23
known_NIR_7417	chr16	57019133;57019346	57019222;57021421	-	57019133	57021421	cassetteExon	ENSMUST00000231391.2	known	0.83	5.0	1	10;0	1	n	1.00	4.0	0	4;4	0	n	0.92	12.0	1	24;0	1	n	0.54	3.5	3	4;3	3	y	0.88	7.0	1	13;1	1	n	1.00	2.5	0	5;0	0	n	0.85	5.5	1	11;0	1	n	1.00	6.5	0	13;0	0	n	0.64	3.5	2	7;0	2	n	1.00	6.0	0	11;1	0	n	1.00	5.0	0	8;2	0	n	0.60	1.5	1	3;0	1	n	ENSMUSG00000022749.9	Tbc1d23	chr16	protein_coding	TBC1 domain family, member 23
known_NIR_7418	chr16	57019346	57021421	-	57019346	57028567	A5SS	ENSMUST00000023431.8	known	-	-	-	-	-	-	1.00	4	0	4	0	n	0.00	0	19	0	19	n	0.30	3	7	3	7	y	0.08	1	11	1	11	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.50	2	2	2	2	n	0.00	0	7	0	7	n	ENSMUSG00000022749.9	Tbc1d23	chr16	protein_coding	TBC1 domain family, member 23
known_NIR_7419	chr16	57382125	57427029	-	57143906	57427029	A3SS	ENSMUST00000114371.5	known	0.25	5	15	5	15	y	0.29	2	5	2	5	n	0.29	6	15	6	15	y	0.18	3	14	3	14	y	0.24	4	13	4	13	y	0.27	3	8	3	8	y	0.50	9	9	9	9	y	0.20	2	8	2	8	y	0.12	2	14	2	14	y	0.44	7	9	7	9	y	0.54	7	6	7	6	y	0.20	2	8	2	8	y	ENSMUSG00000022748.9	Cmss1	chr16	protein_coding	cms small ribosomal subunit 1
known_NIR_7420	chr16	58548447;58549586	58549536;58549801	+	58548447	58549801	cassetteExon	ENSMUST00000023426.12	known	0.15	5.5	32	1;10	32	n	0.13	5.0	33	4;6	33	y	0.10	5.0	43	2;8	43	y	0.10	3.5	33	1;6	33	n	0.05	2.5	47	0;5	47	n	0.09	2.0	21	0;4	21	n	0.05	2.5	46	0;5	46	n	0.06	2.0	32	1;3	32	n	0.11	2.5	21	2;3	21	y	0.07	3.5	44	3;4	44	y	0.09	3.5	35	2;5	35	y	0.01	0.5	44	0;1	44	n	ENSMUSG00000022744.13	Cldnd1	chr16	protein_coding	claudin domain containing 1
known_NIR_7421	chr16	58550110	58551632	+	58550110	58551665	A3SS	ENSMUST00000023426.12	known	0.00	0	60	0	60	n	0.00	0	54	0	54	n	0.02	2	84	2	84	y	0.00	0	58	0	58	n	0.00	0	79	0	79	n	0.00	0	53	0	53	n	0.00	0	97	0	97	n	0.00	0	47	0	47	n	0.00	0	32	0	32	n	0.00	0	62	0	62	n	0.00	0	41	0	41	n	0.00	0	63	0	63	n	ENSMUSG00000022744.13	Cldnd1	chr16	protein_coding	claudin domain containing 1
known_NIR_7422	chr16	58551775	58553202	+	58551775;58553081	58552944;58553202	ES	ENSMUST00000023426.12	known	0.00	0	45.5	0	46;45	n	0.02	1	43.0	1	45;41	n	0.04	3	70.0	3	73;67	y	0.04	2	48.5	2	37;60	y	0.01	1	66.0	1	64;68	n	0.00	0	33.0	0	38;28	n	0.01	1	67.5	1	66;69	n	0.03	1	32.5	1	27;38	n	0.00	0	34.0	0	33;35	n	0.02	1	57.0	1	51;63	n	0.02	1	40.5	1	39;42	n	0.02	1	43.0	1	35;51	n	ENSMUSG00000022744.13	Cldnd1	chr16	protein_coding	claudin domain containing 1
known_NIR_7423	chr16	58551775	58553202	+	58553081	58553202	5pMXE	ENSMUST00000162249.2	known	0.00	0	45	0	45	n	0.02	1	41	1	41	n	0.04	3	67	3	67	y	0.03	2	60	2	60	y	0.01	1	68	1	68	n	0.00	0	28	0	28	n	0.01	1	69	1	69	n	0.03	1	38	1	38	n	0.00	0	35	0	35	n	0.02	1	63	1	63	n	0.02	1	42	1	42	n	0.02	1	51	1	51	n	ENSMUSG00000022744.13	Cldnd1	chr16	protein_coding	claudin domain containing 1
known_NIR_7424	chr16	59293260	59295873	+	59292308	59295873	A5SS	ENSMUST00000023407.12	known	0.00	0	18	0	18	n	0.00	0	18	0	18	n	0.00	0	22	0	22	n	0.00	0	33	0	33	n	0.04	2	51	2	51	y	0.00	0	22	0	22	n	0.00	0	24	0	24	n	0.00	0	12	0	12	n	0.04	1	22	1	22	n	0.06	2	34	2	34	y	0.00	0	19	0	19	n	0.00	0	27	0	27	n	ENSMUSG00000022724.16	Riox2	chr16	protein_coding	ribosomal oxygenase 2
known_NIR_7425	chr16	59307962	59309708	+	59307962	59309853	A3SS	ENSMUST00000131272.3	known	1.00	47	0	47	0	n	1.00	44	0	44	0	n	1.00	36	0	36	0	n	1.00	61	0	61	0	n	1.00	54	0	54	0	n	1.00	33	0	33	0	n	1.00	57	0	57	0	n	1.00	18	0	18	0	n	0.97	36	1	36	1	n	1.00	54	0	54	0	n	0.94	31	2	31	2	y	0.98	52	1	52	1	n	ENSMUSG00000022724.16	Riox2	chr16	protein_coding	ribosomal oxygenase 2
known_NIR_7426	chr16	62596746	62606151	-	62596994	62606151	A3SS	ENSMUST00000063089.12	known	1.00	3	0	3	0	n	0.45	5	6	5	6	y	0.20	6	24	6	24	y	0.69	11	5	11	5	y	0.33	4	8	4	8	y	0.39	7	11	7	11	y	0.26	5	14	5	14	y	0.21	3	11	3	11	y	0.16	3	16	3	16	y	0.47	8	9	8	9	y	0.46	6	7	6	7	y	0.43	10	13	10	13	y	ENSMUSG00000050312.13	Nsun3	chr16	protein_coding	NOL1/NOP2/Sun domain family member 3
known_NIR_7427	chr16	62616071	62623083	-	62616071;62622153	62622085;62623083	ES	ENSMUST00000089289.6	known	0.25	3	9.0	3	12;6	y	0.41	7	10.0	7	7;13	y	0.16	2	10.5	2	8;13	y	0.30	7	16.0	7	16;16	y	0.31	6	13.5	6	13;14	y	0.30	3	7.0	3	9;5	y	0.33	6	12.0	6	12;12	y	0.21	2	7.5	2	6;9	y	0.45	7	8.5	7	6;11	y	0.43	5	6.5	5	4;9	y	0.29	1	2.5	1	1;4	n	0.41	11	16.0	11	14;18	y	ENSMUSG00000022911.12	Arl13b	chr16	protein_coding	ADP-ribosylation factor-like 13B
known_NIR_7428	chr16	62647776	62667048	-	62647776;62651176	62651106;62667048	ES	ENSMUST00000089289.6	known	0.00	0	7.5	0	8;7	n	0.00	0	8.5	0	13;4	n	0.00	0	13.0	0	15;11	n	0.00	0	22.0	0	25;19	n	0.14	2	12.0	2	12;12	y	0.15	1	5.5	1	7;4	n	0.00	0	21.5	0	22;21	n	0.00	0	11.0	0	14;8	n	0.00	0	21.5	0	25;18	n	0.04	1	24.5	1	24;25	n	0.00	0	7.5	0	6;9	n	0.00	0	18.5	0	18;19	n	ENSMUSG00000022911.12	Arl13b	chr16	protein_coding	ADP-ribosylation factor-like 13B
known_NIR_7429	chr16	65347940	65359361	-	65347940;65350960	65350905;65359361	ES	ENSMUST00000231259.2	known	0.97	47	1.5	47	2;1	n	0.96	54	2.5	54	4;1	n	0.97	100	3.0	100	5;1	n	1.00	64	0.0	64	0;0	n	0.98	86	2.0	86	2;2	y	0.98	52	1.0	52	1;1	n	0.99	74	1.0	74	1;1	n	0.99	45	0.5	45	1;0	n	0.97	39	1.0	39	1;1	n	0.99	70	1.0	70	2;0	n	0.98	47	1.0	47	1;1	n	0.99	82	1.0	82	2;0	n	ENSMUSG00000004843.8	Chmp2b	chr16	protein_coding	charged multivesicular body protein 2B
known_NIR_7430	chr16	75555336	75556303	-	75555336;75555615	75555520;75556303	ES	ENSMUST00000232633.2	known	0.96	55	2.0	55	1;3	n	0.95	46	2.5	46	2;3	y	0.95	241	13.0	241	3;23	y	0.96	68	3.0	68	2;4	y	0.96	130	6.0	130	5;7	y	0.97	131	3.5	131	3;4	y	0.95	92	4.5	92	1;8	n	0.96	165	7.5	165	3;12	y	1.00	24	0.0	24	0;0	n	0.95	60	3.0	60	2;4	y	0.99	50	0.5	50	1;0	n	1.00	50	0.0	50	0;0	n	ENSMUSG00000032932.16	Hspa13	chr16	protein_coding	heat shock protein 70 family, member 13
known_NIR_7431	chr16	76091903	76149360	-	76091903;76127752	76127634;76149360	ES	ENSMUST00000121927.8	known	0.86	3	0.5	3	0;1	n	0.00	0	1.5	0	1;2	n	0.35	3	5.5	3	4;7	y	0.57	2	1.5	2	2;1	n	0.21	2	7.5	2	7;8	y	0.00	0	4.5	0	6;3	n	0.57	2	1.5	2	2;1	n	0.57	2	1.5	2	2;1	n	0.50	2	2.0	2	3;1	n	0.14	1	6.0	1	5;7	n	0.00	0	3.5	0	5;2	n	0.00	0	7.5	0	12;3	n	ENSMUSG00000048490.15	Nrip1	chr16	protein_coding	nuclear receptor interacting protein 1
known_NIR_7432	chr16	76091903	76149360	-	76127752	76149360	3pMXE	ENSMUST00000141182.2	known	0.75	3	1	3	1	n	0.00	0	2	0	2	n	0.30	3	7	3	7	y	0.67	2	1	2	1	n	0.20	2	8	2	8	y	0.00	0	3	0	3	n	0.67	2	1	2	1	n	0.67	2	1	2	1	n	0.67	2	1	2	1	n	0.12	1	7	1	7	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000048490.15	Nrip1	chr16	protein_coding	nuclear receptor interacting protein 1
known_NIR_7433	chr16	76890630	76894537	+	76890630	76904773	A3SS	ENSMUST00000023580.8	known	0.00	0	51	0	51	n	0.00	0	29	0	29	n	0.00	0	61	0	61	n	0.00	0	51	0	51	n	0.00	0	62	0	62	n	0.00	0	34	0	34	n	0.03	2	66	2	66	y	0.00	0	33	0	33	n	0.00	0	47	0	47	n	0.00	0	63	0	63	n	0.00	0	37	0	37	n	0.00	0	58	0	58	n	ENSMUSG00000022867.12	Usp25	chr16	protein_coding	ubiquitin specific peptidase 25
known_NIR_7434	chr16	76896634	76904773	+	76890630	76904773	A5SS	ENSMUST00000023580.8	known	0.00	0	51	0	51	n	0.00	0	29	0	29	n	0.00	0	61	0	61	n	0.00	0	51	0	51	n	0.00	0	62	0	62	n	0.00	0	34	0	34	n	0.08	6	66	6	66	y	0.00	0	33	0	33	n	0.00	0	47	0	47	n	0.00	0	63	0	63	n	0.00	0	37	0	37	n	0.00	0	58	0	58	n	ENSMUSG00000022867.12	Usp25	chr16	protein_coding	ubiquitin specific peptidase 25
known_NIR_7435	chr16	77297533	77298391	+	77157606	77298391	A5SS	ENSMUST00000182398.8	known	1.00	2	0	2	0	n	1.00	6	0	6	0	n	1.00	5	0	5	0	n	1.00	1	0	1	0	n	0.86	6	1	6	1	n	1.00	4	0	4	0	n	0.83	10	2	10	2	y	1.00	5	0	5	0	n	0.50	1	1	1	1	n	1.00	3	0	3	0	n	0.83	5	1	5	1	n	0.92	12	1	12	1	n	ENSMUSG00000090386.11	Mir99ahg	chr16	lncRNA	Mir99a and Mirlet7c-1 host gene (non-protein coding)
known_NIR_7436	chr16	77297533	77298391	+	77233290	77298391	A5SS	ENSMUST00000182601.8	known	0.50	2	2	2	2	n	0.75	6	2	6	2	n	0.83	5	1	5	1	n	1.00	1	0	1	0	n	0.50	6	6	6	6	y	1.00	4	0	4	0	n	1.00	10	0	10	0	n	1.00	5	0	5	0	n	1.00	1	0	1	0	n	0.60	3	2	3	2	n	1.00	5	0	5	0	n	0.80	12	3	12	3	y	ENSMUSG00000090386.11	Mir99ahg	chr16	lncRNA	Mir99a and Mirlet7c-1 host gene (non-protein coding)
known_NIR_7437	chr16	78048776	78050501	-	78048776	78050325	A5SS	ENSMUST00000211335.2	known	0.43	3	4	3	4	n	0.29	2	5	2	5	n	0.67	2	1	2	1	n	1.00	2	0	2	0	n	0.29	2	5	2	5	n	0.33	2	4	2	4	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.40	6	9	6	9	y	0.00	0	3	0	3	n	0.17	1	5	1	5	n	ENSMUSG00000109841.3	E330011O21Rik	chr16	lncRNA	RIKEN cDNA E330011O21 gene
known_NIR_7438	chr16	78048776	78050501	-	78048776;78050355	78050325;78050501	ES	ENSMUST00000211650.2	known	0.60	3	2.0	3	4;0	n	0.33	2	4.0	2	5;3	y	0.67	2	1.0	2	1;1	n	1.00	2	0.0	2	0;0	n	0.44	2	2.5	2	5;0	n	0.40	2	3.0	2	4;2	n	0.25	1	3.0	1	4;2	n	0.00	0	1.0	0	1;1	n	0.67	1	0.5	1	1;0	n	0.50	6	6.0	6	9;3	y	0.00	0	2.0	0	3;1	n	0.22	1	3.5	1	5;2	n	ENSMUSG00000109841.3	E330011O21Rik	chr16	lncRNA	RIKEN cDNA E330011O21 gene
known_NIR_7439	chr16	78048776;78050384	78050325;78050501	-	78048776	78050501	cassetteExon	ENSMUST00000210839.2	known	0.40	2.0	3	4;0	3	n	0.56	2.5	2	5;0	2	n	0.20	0.5	2	1;0	2	n	0.33	1.0	2	0;2	2	n	0.69	4.5	2	5;4	2	y	0.50	2.0	2	4;0	2	n	0.78	3.5	1	4;3	1	n	1.00	0.5	0	1;0	0	n	0.33	0.5	1	1;0	1	n	0.54	7.0	6	9;5	6	y	1.00	2.5	0	3;2	0	n	0.78	3.5	1	5;2	1	n	ENSMUSG00000109841.3	E330011O21Rik	chr16	lncRNA	RIKEN cDNA E330011O21 gene
known_NIR_7440	chr16	78048776;78050659	78050501;78052248	-	78048776;78050355	78050325;78052248	MXE	ENSMUST00000211605.2	known	0.56	2.5	2.0	3;2	4;0	n	0.55	3.0	2.5	2;4	5;0	n	0.86	3.0	0.5	2;4	1;0	n	1.00	2.0	0.0	2;2	0;0	n	0.67	5.0	2.5	2;8	5;0	n	0.62	4.0	2.5	2;6	4;1	n	0.60	3.0	2.0	1;5	4;0	n	0.67	1.0	0.5	0;2	1;0	n	0.83	2.5	0.5	1;4	1;0	n	0.62	9.0	5.5	6;12	9;2	y	0.62	2.5	1.5	0;5	3;0	n	0.59	5.0	3.5	1;9	5;2	n	ENSMUSG00000109841.3	E330011O21Rik	chr16	lncRNA	RIKEN cDNA E330011O21 gene
known_NIR_7441	chr16	78050355	78052248	-	78050659	78052248	A3SS&ES	ENSMUST00000210555.2	known	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.14	2	12	2	12	y	0.00	0	5	0	5	n	0.18	2	9	2	9	y	ENSMUSG00000109841.3	E330011O21Rik	chr16	lncRNA	RIKEN cDNA E330011O21 gene
known_NIR_7442	chr16	78050355;78050659	78050501;78052248	-	78050355	78052248	cassetteExon	ENSMUST00000211605.2	known	1.00	1.0	0	0;2	0	n	1.00	3.5	0	3;4	0	n	1.00	2.5	0	1;4	0	n	1.00	1.0	0	0;2	0	n	1.00	4.0	0	0;8	0	n	0.80	4.0	1	2;6	1	n	1.00	3.5	0	2;5	0	n	1.00	1.5	0	1;2	0	n	1.00	2.0	0	0;4	0	n	0.79	7.5	2	3;12	2	y	1.00	3.0	0	1;5	0	n	0.73	5.5	2	2;9	2	y	ENSMUSG00000109841.3	E330011O21Rik	chr16	lncRNA	RIKEN cDNA E330011O21 gene
known_NIR_7443	chr16	78157426	78161690	-	78132099	78161690	A3SS	ENSMUST00000231353.2	known	1.00	34	0	34	0	n	1.00	20	0	20	0	n	1.00	801	0	801	0	n	1.00	17	0	17	0	n	0.99	120	1	120	1	n	1.00	188	0	188	0	n	0.96	46	2	46	2	y	1.00	61	0	61	0	n	1.00	19	0	19	0	n	1.00	26	0	26	0	n	1.00	14	0	14	0	n	1.00	40	0	40	0	n	ENSMUSG00000022863.16	Btg3	chr16	protein_coding	BTG anti-proliferation factor 3
known_NIR_7444	chr16	78170311	78174056	-	78170311	78173489	5pMXE	ENSMUST00000023570.14	known	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.02	7	315	7	315	y	0.00	0	5	0	5	n	0.12	4	30	4	30	y	0.00	0	61	0	61	n	0.00	0	18	0	18	n	0.00	0	23	0	23	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	ENSMUSG00000022863.16	Btg3	chr16	protein_coding	BTG anti-proliferation factor 3
known_NIR_7445	chr16	78372942	78373279	-	78372942	78373079	A5SS	ENSMUST00000232052.2	known	0.33	3	6	3	6	n	0.43	3	4	3	4	n	0.32	7	15	7	15	y	0.18	2	9	2	9	y	0.17	2	10	2	10	y	0.25	2	6	2	6	n	1.00	2	0	2	0	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.19	3	13	3	13	y	0.25	2	6	2	6	n	0.70	7	3	7	3	y	ENSMUSG00000022864.15	D16Ertd472e	chr16	protein_coding	DNA segment, Chr 16, ERATO Doi 472, expressed
known_NIR_7446	chr16	78372942	78373312	-	78372942	78373079	A5SS	ENSMUST00000232052.2	known	0.45	5	6	5	6	y	0.33	2	4	2	4	n	0.53	17	15	17	15	y	0.36	5	9	5	9	y	0.33	5	10	5	10	y	0.45	5	6	5	6	y	1.00	2	0	2	0	n	0.54	7	6	7	6	y	0.43	3	4	3	4	n	0.24	4	13	4	13	y	0.14	1	6	1	6	n	0.25	1	3	1	3	n	ENSMUSG00000022864.15	D16Ertd472e	chr16	protein_coding	DNA segment, Chr 16, ERATO Doi 472, expressed
known_NIR_7447	chr16	78372942	78373312	-	78372942	78373279	A5SS	ENSMUST00000114219.8	known	0.62	5	3	5	3	n	0.40	2	3	2	3	n	0.71	17	7	17	7	y	0.71	5	2	5	2	n	0.71	5	2	5	2	n	0.71	5	2	5	2	n	0.50	2	2	2	2	n	1.00	7	0	7	0	n	1.00	3	0	3	0	n	0.57	4	3	4	3	n	0.33	1	2	1	2	n	0.12	1	7	1	7	n	ENSMUSG00000022864.15	D16Ertd472e	chr16	protein_coding	DNA segment, Chr 16, ERATO Doi 472, expressed
known_NIR_7448	chr16	78372942	78373312	-	78372942	78373347	A5SS	ENSMUST00000114220.9	known	1.00	5	0	5	0	n	0.40	2	3	2	3	n	1.00	17	0	17	0	n	1.00	5	0	5	0	n	0.71	5	2	5	2	n	1.00	5	0	5	0	n	1.00	2	0	2	0	n	0.64	7	4	7	4	y	1.00	3	0	3	0	n	1.00	4	0	4	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000022864.15	D16Ertd472e	chr16	protein_coding	DNA segment, Chr 16, ERATO Doi 472, expressed
known_NIR_7449	chr16	78372942	78373347	-	78372942	78373079	A5SS	ENSMUST00000232052.2	known	0.00	0	6	0	6	n	0.43	3	4	3	4	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.17	2	10	2	10	y	0.00	0	6	0	6	n	-	-	-	-	-	-	0.40	4	6	4	6	y	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	ENSMUSG00000022864.15	D16Ertd472e	chr16	protein_coding	DNA segment, Chr 16, ERATO Doi 472, expressed
known_NIR_7450	chr16	78372942	78373371	-	78372942	78373079	A5SS	ENSMUST00000232052.2	known	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.17	2	10	2	10	y	0.00	0	6	0	6	n	1.00	3	0	3	0	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	ENSMUSG00000022864.15	D16Ertd472e	chr16	protein_coding	DNA segment, Chr 16, ERATO Doi 472, expressed
known_NIR_7451	chr16	8426857	8431847	+	8426857;8429158	8428991;8431847	ES	ENSMUST00000065987.14	known	0.03	8	247.5	8	248;247	y	0.07	13	163.5	13	168;159	y	0.17	10	49.5	10	52;47	y	0.06	24	400.0	24	399;401	y	0.03	15	424.0	15	449;399	y	0.12	12	91.0	12	85;97	y	0.05	15	303.0	15	312;294	y	0.12	23	175.5	23	190;161	y	0.05	12	242.5	12	271;214	y	0.04	18	411.0	18	414;408	y	0.02	5	251.0	5	270;232	y	0.06	27	404.0	27	413;395	y	ENSMUSG00000057880.13	Abat	chr16	protein_coding	4-aminobutyrate aminotransferase
known_NIR_7452	chr16	84626681	84628217	-	84625437	84628217	A3SS	ENSMUST00000114193.8	known	0.00	0	1978	0	1978	n	0.00	2	1955	2	1955	y	0.00	1	1478	1	1478	n	0.00	0	1797	0	1797	n	0.00	0	2071	0	2071	n	0.00	2	976	2	976	y	0.00	0	2483	0	2483	n	0.00	0	1037	0	1037	n	0.00	1	1842	1	1842	n	0.00	0	2676	0	2676	n	0.00	7	2272	7	2272	y	0.00	0	2479	0	2479	n	ENSMUSG00000022890.14	Atp5j	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
known_NIR_7453	chr16	84628395	84630708	-	84628395	84630882	A5SS	ENSMUST00000114193.8	known	0.93	98	7	98	7	y	0.90	122	14	122	14	y	1.00	61	0	61	0	n	0.93	116	9	116	9	y	0.93	116	9	116	9	y	1.00	50	0	50	0	n	0.93	144	11	144	11	y	1.00	41	0	41	0	n	0.94	115	7	115	7	y	0.92	160	14	160	14	y	0.91	125	12	125	12	y	0.95	139	8	139	8	y	ENSMUSG00000022890.14	Atp5j	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
known_NIR_7454	chr16	84628395	84631697	-	84628395	84630708	5pMXE	ENSMUST00000146225.8	known	0.92	1090	98	1090	98	y	0.91	1174	122	1174	122	y	0.94	949	61	949	61	y	0.91	1148	116	1148	116	y	0.91	1237	116	1237	116	y	0.92	574	50	574	50	y	0.91	1485	144	1485	144	y	0.94	659	41	659	41	y	0.91	1198	115	1198	115	y	0.90	1521	160	1521	160	y	0.92	1349	125	1349	125	y	0.91	1488	139	1488	139	y	ENSMUSG00000022890.14	Atp5j	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
known_NIR_7455	chr16	84628395	84631697	-	84628395	84630882	5pMXE	ENSMUST00000114193.8	known	0.99	1090	7	1090	7	y	0.99	1174	14	1174	14	y	1.00	949	0	949	0	n	0.99	1148	9	1148	9	y	0.99	1237	9	1237	9	y	1.00	574	0	574	0	n	0.99	1485	11	1485	11	y	1.00	659	0	659	0	n	0.99	1198	7	1198	7	y	0.99	1521	14	1521	14	y	0.99	1349	12	1349	12	y	0.99	1488	8	1488	8	y	ENSMUSG00000022890.14	Atp5j	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
known_NIR_7456	chr16	84628395	84631697	-	84628395;84630762	84630708;84631697	ES	ENSMUST00000114191.8	known	0.92	1090	88.5	1090	98;79	y	0.93	1174	91.0	1174	122;60	y	0.95	949	54.0	949	61;47	y	0.93	1148	88.5	1148	116;61	y	0.93	1237	96.5	1237	116;77	y	0.93	574	43.0	574	50;36	y	0.93	1485	109.0	1485	144;74	y	0.95	659	35.5	659	41;30	y	0.93	1198	87.5	1198	115;60	y	0.92	1521	125.5	1521	160;91	y	0.93	1349	101.0	1349	125;77	y	0.93	1488	106.0	1488	139;73	y	ENSMUSG00000022890.14	Atp5j	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
known_NIR_7457	chr16	84628395	84631697	-	84630762	84631697	3pMXE	ENSMUST00000150502.2	known	0.93	1090	79	1090	79	y	0.95	1174	60	1174	60	y	0.95	949	47	949	47	y	0.95	1148	61	1148	61	y	0.94	1237	77	1237	77	y	0.94	574	36	574	36	y	0.95	1485	74	1485	74	y	0.96	659	30	659	30	y	0.95	1198	60	1198	60	y	0.94	1521	91	1521	91	y	0.95	1349	77	1349	77	y	0.95	1488	73	1488	73	y	ENSMUSG00000022890.14	Atp5j	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
known_NIR_7458	chr16	84628395	84631780	-	84628395	84630708	A5SS&ES	ENSMUST00000114191.8	known	0.02	2	98	2	98	y	0.00	0	122	0	122	n	0.00	0	61	0	61	n	0.02	2	116	2	116	y	0.00	0	116	0	116	n	0.07	4	50	4	50	y	0.00	0	144	0	144	n	0.00	0	41	0	41	n	0.00	0	115	0	115	n	0.01	1	160	1	160	n	0.03	4	125	4	125	y	0.01	2	139	2	139	y	ENSMUSG00000022890.14	Atp5j	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
known_NIR_7459	chr16	84628395	84631780	-	84628395	84630882	5pMXE	ENSMUST00000114193.8	known	0.22	2	7	2	7	n	0.00	0	14	0	14	n	-	-	-	-	-	-	0.18	2	9	2	9	y	0.00	0	9	0	9	n	1.00	4	0	4	0	n	0.00	0	11	0	11	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.07	1	14	1	14	n	0.25	4	12	4	12	y	0.20	2	8	2	8	y	ENSMUSG00000022890.14	Atp5j	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
known_NIR_7460	chr16	84628395	84631780	-	84628395	84631697	A5SS	ENSMUST00000023608.14	known	0.00	2	1090	2	1090	y	0.00	0	1174	0	1174	n	0.00	0	949	0	949	n	0.00	2	1148	2	1148	y	0.00	0	1237	0	1237	n	0.01	4	574	4	574	y	0.00	0	1485	0	1485	n	0.00	0	659	0	659	n	0.00	0	1198	0	1198	n	0.00	1	1521	1	1521	n	0.00	4	1349	4	1349	y	0.00	2	1488	2	1488	y	ENSMUSG00000022890.14	Atp5j	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
known_NIR_7461	chr16	84628395	84631830	-	84628395	84630708	A5SS&ES	ENSMUST00000114191.8	known	0.05	5	98	5	98	y	0.02	3	122	3	122	y	0.12	8	61	8	61	y	0.01	1	116	1	116	n	0.01	1	116	1	116	n	0.02	1	50	1	50	n	0.06	9	144	9	144	y	0.09	4	41	4	41	y	0.05	6	115	6	115	y	0.06	10	160	10	160	y	0.02	3	125	3	125	y	0.05	7	139	7	139	y	ENSMUSG00000022890.14	Atp5j	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
known_NIR_7462	chr16	84628395	84631830	-	84628395	84630882	5pMXE	ENSMUST00000114193.8	known	0.42	5	7	5	7	y	0.18	3	14	3	14	y	1.00	8	0	8	0	n	0.10	1	9	1	9	n	0.10	1	9	1	9	n	1.00	1	0	1	0	n	0.45	9	11	9	11	y	1.00	4	0	4	0	n	0.46	6	7	6	7	y	0.42	10	14	10	14	y	0.20	3	12	3	12	y	0.47	7	8	7	8	y	ENSMUSG00000022890.14	Atp5j	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
known_NIR_7463	chr16	84628395	84631830	-	84628395	84631697	A5SS	ENSMUST00000023608.14	known	0.00	5	1090	5	1090	y	0.00	3	1174	3	1174	y	0.01	8	949	8	949	y	0.00	1	1148	1	1148	n	0.00	1	1237	1	1237	n	0.00	1	574	1	574	n	0.01	9	1485	9	1485	y	0.01	4	659	4	659	y	0.00	6	1198	6	1198	y	0.01	10	1521	10	1521	y	0.00	3	1349	3	1349	y	0.00	7	1488	7	1488	y	ENSMUSG00000022890.14	Atp5j	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
known_NIR_7464	chr16	84632431	84635969	+	84631911	84635969	A5SS	ENSMUST00000114184.8	known	0.69	25	11	25	11	y	0.81	17	4	17	4	y	0.66	38	20	38	20	y	0.66	43	22	43	22	y	0.75	36	12	36	12	y	0.91	29	3	29	3	y	0.80	44	11	44	11	y	0.76	19	6	19	6	y	0.75	30	10	30	10	y	0.61	35	22	35	22	y	0.89	32	4	32	4	y	0.79	31	8	31	8	y	ENSMUSG00000008976.17	Gabpa	chr16	protein_coding	GA repeat binding protein, alpha
known_NIR_7465	chr16	8473552	8479320	+	8473552	8474420	3pMXE	ENSMUST00000023396.10	known	0.00	0	165	0	165	n	0.00	0	179	0	179	n	0.00	0	167	0	167	n	0.01	2	157	2	157	y	0.00	0	168	0	168	n	0.00	0	60	0	60	n	0.00	0	174	0	174	n	0.00	0	70	0	70	n	0.00	0	134	0	134	n	0.00	0	195	0	195	n	0.00	0	171	0	171	n	0.00	0	183	0	183	n	ENSMUSG00000022711.17	Pmm2	chr16	protein_coding	phosphomannomutase 2
known_NIR_7466	chr16	84762658	84774952	-	84762658;84768349	84768296;84774952	ES	ENSMUST00000227723.2	known	0.72	54	21.5	54	22;21	y	0.57	45	34.0	45	37;31	y	0.66	109	56.5	109	58;55	y	0.61	36	23.0	36	23;23	y	0.57	77	57.5	77	52;63	y	0.58	56	40.5	56	41;40	y	0.59	86	60.5	86	61;60	y	0.63	33	19.5	33	18;21	y	0.49	34	35.5	34	39;32	y	0.58	66	47.0	66	43;51	y	0.65	52	28.0	52	26;30	y	0.50	54	53.0	54	57;49	y	ENSMUSG00000022892.12	App	chr16	protein_coding	amyloid beta (A4) precursor protein
known_NIR_7467	chr16	84827253	84837139	-	84827253	84853212	A5SS	ENSMUST00000005406.12	known	0.81	29	7	29	7	y	0.91	29	3	29	3	y	0.89	56	7	56	7	y	0.91	20	2	20	2	y	0.94	65	4	65	4	y	0.90	35	4	35	4	y	0.77	36	11	36	11	y	0.71	20	8	20	8	y	0.82	18	4	18	4	y	0.97	32	1	32	1	n	0.86	24	4	24	4	y	0.91	41	4	41	4	y	ENSMUSG00000022892.12	App	chr16	protein_coding	amyloid beta (A4) precursor protein
known_NIR_7468	chr16	84827253	84840464	-	84827253;84837195	84837139;84840464	ES	ENSMUST00000227723.2	known	0.49	26	27.5	26	29;26	y	0.60	37	24.5	37	29;20	y	0.52	60	55.5	60	56;55	y	0.61	31	19.5	31	20;19	y	0.48	61	67.0	61	65;69	y	0.51	34	33.0	34	35;31	y	0.62	65	39.5	65	36;43	y	0.66	36	18.5	36	20;17	y	0.56	25	19.5	25	18;21	y	0.56	40	31.5	40	32;31	y	0.62	42	26.0	42	24;28	y	0.50	41	41.5	41	41;42	y	ENSMUSG00000022892.12	App	chr16	protein_coding	amyloid beta (A4) precursor protein
known_NIR_7469	chr16	84827253;84840631	84840464;84853212	-	84827253	84853212	cassetteExon	ENSMUST00000005406.12	known	0.84	37.0	7	26;48	7	y	0.94	43.5	3	37;50	3	y	0.92	83.0	7	60;106	7	y	0.95	35.0	2	31;39	2	y	0.95	78.5	4	61;96	4	y	0.91	41.5	4	34;49	4	y	0.88	82.5	11	65;100	11	y	0.88	58.5	8	36;81	8	y	0.88	30.0	4	25;35	4	y	0.98	54.0	1	40;68	1	n	0.91	39.0	4	42;36	4	y	0.93	53.5	4	41;66	4	y	ENSMUSG00000022892.12	App	chr16	protein_coding	amyloid beta (A4) precursor protein
known_NIR_7470	chr16	8528041	8529997	-	8528041	8529858	A5SS	ENSMUST00000160405.8	known	0.04	1	25	1	25	n	0.06	1	15	1	15	n	0.00	0	48	0	48	n	0.00	0	51	0	51	n	0.06	4	59	4	59	y	0.06	2	29	2	29	y	0.00	0	41	0	41	n	0.00	0	26	0	26	n	0.00	0	26	0	26	n	0.02	1	48	1	48	n	0.03	1	29	1	29	n	0.00	0	46	0	46	n	ENSMUSG00000022710.18	Usp7	chr16	protein_coding	ubiquitin specific peptidase 7
known_NIR_7471	chr16	8530056;8533783	8533609;8534379	-	8530056	8534379	cassetteExon	ENSMUST00000160405.8	known	0.08	3.0	34	4;2	34	y	0.12	2.0	15	1;3	15	n	0.03	1.5	52	0;3	52	n	0.12	4.5	34	0;9	34	n	0.11	8.0	62	5;11	62	y	0.10	2.0	19	1;3	19	n	0.08	4.0	45	5;3	45	y	0.15	4.5	26	5;4	26	y	0.19	6.5	27	8;5	27	y	0.19	7.5	32	7;8	32	y	0.17	5.0	24	0;10	24	n	0.05	3.0	55	0;6	55	n	ENSMUSG00000022710.18	Usp7	chr16	protein_coding	ubiquitin specific peptidase 7
known_NIR_7472	chr16	86567285	86571766	-	86567285	86600861	A5SS	ENSMUST00000232333.2	known	0.46	22	26	22	26	y	0.57	39	30	39	30	y	0.46	13	15	13	15	y	0.40	23	34	23	34	y	0.29	17	41	17	41	y	0.52	12	11	12	11	y	0.30	21	48	21	48	y	0.43	16	21	16	21	y	0.47	24	27	24	27	y	0.48	45	49	45	49	y	0.52	47	44	47	44	y	0.42	45	63	45	63	y	ENSMUSG00000116993.2	Gm32461	chr16	lncRNA	predicted gene, 32461
known_NIR_7473	chr16	86598325	86600861	-	86567285	86600861	A3SS	ENSMUST00000232333.2	known	0.04	1	26	1	26	n	0.00	0	30	0	30	n	0.06	1	15	1	15	n	0.00	0	34	0	34	n	0.05	2	41	2	41	y	0.00	0	11	0	11	n	0.00	0	48	0	48	n	0.00	0	21	0	21	n	0.13	4	27	4	27	y	0.04	2	49	2	49	y	0.06	3	44	3	44	y	0.06	4	63	4	63	y	ENSMUSG00000116993.2	Gm32461	chr16	lncRNA	predicted gene, 32461
known_NIR_7474	chr16	87159491	87164353	+	87159491	87163027	A3SS	ENSMUST00000118115.2	known	0.00	0	17	0	17	n	0.05	1	19	1	19	n	0.37	7	12	7	12	y	0.00	0	12	0	12	n	0.08	2	23	2	23	y	0.11	2	17	2	17	y	0.17	5	24	5	24	y	0.23	3	10	3	10	y	0.07	1	13	1	13	n	0.15	5	28	5	28	y	0.00	0	18	0	18	n	0.24	7	22	7	22	y	ENSMUSG00000044442.12	N6amt1	chr16	protein_coding	N-6 adenine-specific DNA methyltransferase 1 (putative)
known_NIR_7475	chr16	87159491	87164353	+	87159491;87163168	87163027;87164353	ES	ENSMUST00000054442.11	known	0.00	0	20.5	0	17;24	n	0.05	1	19.0	1	19;19	n	0.27	7	18.5	7	12;25	y	0.00	0	19.5	0	12;27	n	0.07	2	25.0	2	23;27	y	0.13	2	13.5	2	17;10	y	0.20	5	20.5	5	24;17	y	0.21	3	11.5	3	10;13	y	0.07	1	13.5	1	13;14	n	0.16	5	26.0	5	28;24	y	0.00	0	15.0	0	18;12	n	0.23	7	23.5	7	22;25	y	ENSMUSG00000044442.12	N6amt1	chr16	protein_coding	N-6 adenine-specific DNA methyltransferase 1 (putative)
known_NIR_7476	chr16	87210176	87212042	-	87209449	87212042	A3SS	ENSMUST00000039449.9	known	0.00	0	11	0	11	n	0.17	2	10	2	10	y	0.00	0	15	0	15	n	0.15	4	22	4	22	y	0.06	2	34	2	34	y	0.15	3	17	3	17	y	0.08	2	22	2	22	y	0.07	2	26	2	26	y	0.00	0	16	0	16	n	0.00	0	21	0	21	n	0.12	3	21	3	21	y	0.00	0	24	0	24	n	ENSMUSG00000052299.10	Ltn1	chr16	protein_coding	listerin E3 ubiquitin protein ligase 1
known_NIR_7477	chr16	87255630	87261623	+	87255630	87258853	3pMXE	ENSMUST00000131356.8	known	0.00	0	44	0	44	n	0.03	1	34	1	34	n	0.04	3	76	3	76	y	0.02	1	54	1	54	n	0.00	0	60	0	60	n	0.04	2	43	2	43	y	0.05	4	74	4	74	y	0.09	3	30	3	30	y	0.00	0	37	0	37	n	0.05	3	55	3	55	y	0.07	3	43	3	43	y	0.03	2	56	2	56	y	ENSMUSG00000025616.15	Usp16	chr16	protein_coding	ubiquitin specific peptidase 16
known_NIR_7478	chr16	87255630	87261623	+	87255630;87259028	87258853;87261623	ES	ENSMUST00000026710.12	known	0.00	0	41.0	0	44;38	n	0.04	1	27.5	1	34;21	n	0.03	3	83.5	3	76;91	y	0.02	1	48.5	1	54;43	n	0.00	0	55.0	0	60;50	n	0.04	2	46.0	2	43;49	y	0.05	4	70.5	4	74;67	y	0.07	3	40.0	3	30;50	y	0.00	0	34.0	0	37;31	n	0.05	3	61.0	3	55;67	y	0.07	3	37.5	3	43;32	y	0.03	2	64.5	2	56;73	y	ENSMUSG00000025616.15	Usp16	chr16	protein_coding	ubiquitin specific peptidase 16
known_NIR_7479	chr16	87263244	87266566	+	87263244	87266563	A3SS	ENSMUST00000026710.12	known	0.09	6	58	6	58	y	0.20	8	32	8	32	y	0.16	16	85	16	85	y	0.12	8	60	8	60	y	0.08	6	71	6	71	y	0.10	4	38	4	38	y	0.09	6	61	6	61	y	0.15	7	40	7	40	y	0.10	6	53	6	53	y	0.09	7	70	7	70	y	0.07	2	27	2	27	y	0.11	6	51	6	51	y	ENSMUSG00000025616.15	Usp16	chr16	protein_coding	ubiquitin specific peptidase 16
known_NIR_7480	chr16	87269056	87271470	+	87269056;87270073	87269995;87271470	ES	ENSMUST00000026710.12	known	0.00	0	42.0	0	44;40	n	0.00	0	30.0	0	29;31	n	0.00	0	93.0	0	101;85	n	0.02	1	55.5	1	57;54	n	0.01	1	68.5	1	65;72	n	0.00	0	29.5	0	29;30	n	0.08	5	61.0	5	59;63	y	0.00	0	34.5	0	38;31	n	0.02	1	43.5	1	43;44	n	0.00	0	64.0	0	63;65	n	0.03	1	30.5	1	33;28	n	0.00	0	64.0	0	67;61	n	ENSMUSG00000025616.15	Usp16	chr16	protein_coding	ubiquitin specific peptidase 16
known_NIR_7481	chr16	87269056	87271470	+	87270073	87271470	5pMXE	ENSMUST00000146386.2	known	0.00	0	40	0	40	n	0.00	0	31	0	31	n	0.00	0	85	0	85	n	0.02	1	54	1	54	n	0.01	1	72	1	72	n	0.00	0	30	0	30	n	0.07	5	63	5	63	y	0.00	0	31	0	31	n	0.02	1	44	1	44	n	0.00	0	65	0	65	n	0.03	1	28	1	28	n	0.00	0	61	0	61	n	ENSMUSG00000025616.15	Usp16	chr16	protein_coding	ubiquitin specific peptidase 16
known_NIR_7482	chr16	87282611	87282722	-	87282632	87282722	A3SS	ENSMUST00000026704.14	known	0.01	3	391	3	391	y	0.00	0	322	0	322	n	0.02	6	314	6	314	y	0.00	0	387	0	387	n	0.01	7	497	7	497	y	0.02	3	154	3	154	y	0.00	0	448	0	448	n	0.00	0	200	0	200	n	0.00	0	310	0	310	n	0.02	9	408	9	408	y	0.00	0	399	0	399	n	0.02	9	475	9	475	y	ENSMUSG00000025613.14	Cct8	chr16	protein_coding	chaperonin containing Tcp1, subunit 8 (theta)
known_NIR_7483	chr16	87285807	87287209	-	87285832	87287209	A3SS	ENSMUST00000026704.14	known	0.00	0	308	0	308	n	0.00	0	200	0	200	n	0.00	0	264	0	264	n	0.00	0	307	0	307	n	0.00	0	362	0	362	n	0.00	0	112	0	112	n	0.00	0	335	0	335	n	0.00	0	186	0	186	n	0.01	2	241	2	241	y	0.00	0	343	0	343	n	0.00	0	248	0	248	n	0.00	0	366	0	366	n	ENSMUSG00000025613.14	Cct8	chr16	protein_coding	chaperonin containing Tcp1, subunit 8 (theta)
known_NIR_7484	chr16	87290674	87292617	-	87290674;87291315	87291225;87292617	ES	ENSMUST00000026704.14	known	0.01	2	160.5	2	160;161	y	0.00	0	103.5	0	97;110	n	0.00	0	179.5	0	179;180	n	0.00	0	254.0	0	262;246	n	0.00	0	261.0	0	270;252	n	0.02	2	95.5	2	100;91	y	0.00	1	213.5	1	226;201	n	0.00	0	122.0	0	124;120	n	0.01	1	126.0	1	135;117	n	0.00	0	222.0	0	229;215	n	0.00	0	132.5	0	145;120	n	0.00	1	223.5	1	234;213	n	ENSMUSG00000025613.14	Cct8	chr16	protein_coding	chaperonin containing Tcp1, subunit 8 (theta)
known_NIR_7485	chr16	87291315	87292467	-	87291315	87292617	A5SS	ENSMUST00000026704.14	known	0.00	0	161	0	161	n	0.00	0	110	0	110	n	0.00	0	180	0	180	n	0.00	1	246	1	246	n	0.01	3	252	3	252	y	0.00	0	91	0	91	n	0.00	0	201	0	201	n	0.00	0	120	0	120	n	0.02	2	117	2	117	y	0.00	0	215	0	215	n	0.00	0	120	0	120	n	0.00	0	213	0	213	n	ENSMUSG00000025613.14	Cct8	chr16	protein_coding	chaperonin containing Tcp1, subunit 8 (theta)
known_NIR_7486	chr16	90039606	90039760	-	90039540	90039760	A3SS	ENSMUST00000163419.9	known	0.55	12	10	12	10	y	0.40	6	9	6	9	y	0.62	31	19	31	19	y	0.42	13	18	13	18	y	0.48	21	23	21	23	y	0.52	11	10	11	10	y	0.48	13	14	13	14	y	0.36	4	7	4	7	y	0.45	13	16	13	16	y	0.47	18	20	18	20	y	0.58	19	14	19	14	y	0.47	19	21	19	21	y	ENSMUSG00000022983.17	Scaf4	chr16	protein_coding	SR-related CTD-associated factor 4
known_NIR_7487	chr16	90045591	90046515	-	90045591	90046527	A5SS	ENSMUST00000163419.9	known	0.67	10	5	10	5	y	0.54	7	6	7	6	y	0.64	14	8	14	8	y	0.81	13	3	13	3	y	0.44	12	15	12	15	y	0.78	14	4	14	4	y	0.40	6	9	6	9	y	0.47	7	8	7	8	y	0.35	6	11	6	11	y	0.55	6	5	6	5	y	0.60	6	4	6	4	y	0.64	9	5	9	5	y	ENSMUSG00000022983.17	Scaf4	chr16	protein_coding	SR-related CTD-associated factor 4
known_NIR_7488	chr16	90046600	90046942	-	90046600	90046945	A5SS	ENSMUST00000163419.9	known	0.10	2	19	2	19	y	0.22	6	21	6	21	y	0.16	5	26	5	26	y	0.18	3	14	3	14	y	0.29	10	24	10	24	y	0.15	2	11	2	11	y	0.10	3	26	3	26	y	0.29	4	10	4	10	y	0.32	8	17	8	17	y	0.33	8	16	8	16	y	0.42	8	11	8	11	y	0.17	4	20	4	20	y	ENSMUSG00000022983.17	Scaf4	chr16	protein_coding	SR-related CTD-associated factor 4
known_NIR_7489	chr16	90535557	90543199	+	90535557	90543530	A3SS	ENSMUST00000125429.3	known	0.00	0	28	0	28	n	0.15	4	22	4	22	y	0.22	10	35	10	35	y	0.08	2	22	2	22	y	0.05	1	19	1	19	n	0.00	0	24	0	24	n	0.09	2	20	2	20	y	0.00	0	20	0	20	n	0.00	0	14	0	14	n	0.00	0	19	0	19	n	0.00	0	11	0	11	n	0.07	1	13	1	13	n	ENSMUSG00000039956.10	Mrap	chr16	protein_coding	melanocortin 2 receptor accessory protein
known_NIR_7490	chr16	90535557	90544263	+	90535557	90543199	3pMXE	ENSMUST00000133973.8	known	1.00	5	0	5	0	n	0.60	6	4	6	4	y	0.60	15	10	15	10	y	0.71	5	2	5	2	n	0.88	7	1	7	1	n	1.00	16	0	16	0	n	0.90	19	2	19	2	y	1.00	8	0	8	0	n	1.00	8	0	8	0	n	1.00	12	0	12	0	n	1.00	12	0	12	0	n	0.86	6	1	6	1	n	ENSMUSG00000039956.10	Mrap	chr16	protein_coding	melanocortin 2 receptor accessory protein
known_NIR_7491	chr16	90535557	90544263	+	90535557	90543530	A3SS&ES	ENSMUST00000125429.3	known	0.15	5	28	5	28	y	0.21	6	22	6	22	y	0.30	15	35	15	35	y	0.19	5	22	5	22	y	0.27	7	19	7	19	y	0.40	16	24	16	24	y	0.49	19	20	19	20	y	0.29	8	20	8	20	y	0.36	8	14	8	14	y	0.39	12	19	12	19	y	0.52	12	11	12	11	y	0.32	6	13	6	13	y	ENSMUSG00000039956.10	Mrap	chr16	protein_coding	melanocortin 2 receptor accessory protein
known_NIR_7492	chr16	90535557	90544412	+	90535557	90543199	3pMXE	ENSMUST00000133973.8	known	1.00	271	0	271	0	n	0.98	213	4	213	4	y	0.98	502	10	502	10	y	0.99	222	2	222	2	y	1.00	413	1	413	1	n	1.00	279	0	279	0	n	0.99	363	2	363	2	y	1.00	201	0	201	0	n	1.00	187	0	187	0	n	1.00	262	0	262	0	n	1.00	258	0	258	0	n	0.99	198	1	198	1	n	ENSMUSG00000039956.10	Mrap	chr16	protein_coding	melanocortin 2 receptor accessory protein
known_NIR_7493	chr16	90535557	90544412	+	90535557	90544263	A3SS	ENSMUST00000138984.8	known	0.98	271	5	271	5	y	0.97	213	6	213	6	y	0.97	502	15	502	15	y	0.98	222	5	222	5	y	0.98	413	7	413	7	y	0.95	279	16	279	16	y	0.95	363	19	363	19	y	0.96	201	8	201	8	y	0.96	187	8	187	8	y	0.96	262	12	262	12	y	0.96	258	12	258	12	y	0.97	198	6	198	6	y	ENSMUSG00000039956.10	Mrap	chr16	protein_coding	melanocortin 2 receptor accessory protein
known_NIR_7494	chr16	90535557	90544412	+	90535557;90543614	90543530;90544412	ES	ENSMUST00000125429.3	known	0.92	271	23.5	271	28;19	y	0.92	213	18.0	213	22;14	y	0.93	502	35.0	502	35;35	y	0.93	222	16.5	222	22;11	y	0.96	413	17.5	413	19;16	y	0.93	279	20.5	279	24;17	y	0.96	363	15.0	363	20;10	y	0.93	201	16.0	201	20;12	y	0.93	187	14.5	187	14;15	y	0.94	262	16.5	262	19;14	y	0.96	258	11.5	258	11;12	y	0.95	198	10.5	198	13;8	y	ENSMUSG00000039956.10	Mrap	chr16	protein_coding	melanocortin 2 receptor accessory protein
known_NIR_7495	chr16	90535557;90543614	90543199;90544412	+	90535557	90544412	cassetteExon	ENSMUST00000038197.3	known	0.03	9.5	271	0;19	271	n	0.04	9.0	213	4;14	213	y	0.04	22.5	502	10;35	502	y	0.03	6.5	222	2;11	222	y	0.02	8.5	413	1;16	413	n	0.03	8.5	279	0;17	279	n	0.02	6.0	363	2;10	363	y	0.03	6.0	201	0;12	201	n	0.04	7.5	187	0;15	187	n	0.03	7.0	262	0;14	262	n	0.02	6.0	258	0;12	258	n	0.02	4.5	198	1;8	198	n	ENSMUSG00000039956.10	Mrap	chr16	protein_coding	melanocortin 2 receptor accessory protein
known_NIR_7496	chr16	90724396	90727882	-	90724396	90726804	5pMXE	ENSMUST00000129345.8	known	0.00	0	57	0	57	n	0.02	1	59	1	59	n	0.00	0	53	0	53	n	0.00	0	58	0	58	n	0.00	0	70	0	70	n	0.00	0	28	0	28	n	0.01	1	79	1	79	n	0.03	1	30	1	30	n	0.03	2	56	2	56	y	0.02	1	57	1	57	n	0.00	0	66	0	66	n	0.02	1	51	1	51	n	ENSMUSG00000022972.11	Cfap298	chr16	protein_coding	cilia and flagella associate protien 298
known_NIR_7497	chr16	90724396	90727882	-	90724396;90726871	90726804;90727882	ES	ENSMUST00000023694.11	known	0.00	0	56.5	0	57;56	n	0.01	1	66.0	1	59;73	n	0.00	0	49.5	0	53;46	n	0.00	0	57.0	0	58;56	n	0.00	0	75.0	0	70;80	n	0.00	0	27.5	0	28;27	n	0.01	1	74.5	1	79;70	n	0.03	1	37.0	1	30;44	n	0.03	2	60.5	2	56;65	y	0.01	1	68.5	1	57;80	n	0.00	0	67.0	0	66;68	n	0.02	1	54.0	1	51;57	n	ENSMUSG00000022972.11	Cfap298	chr16	protein_coding	cilia and flagella associate protien 298
known_NIR_7498	chr16	90824217	90827304	-	90824217	90827321	A5SS	ENSMUST00000118522.8	known	0.65	20	11	20	11	y	0.74	20	7	20	7	y	0.79	37	10	37	10	y	0.51	20	19	20	19	y	0.80	39	10	39	10	y	0.94	15	1	15	1	n	0.67	31	15	31	15	y	0.71	24	10	24	10	y	0.60	21	14	21	14	y	0.71	17	7	17	7	y	0.73	19	7	19	7	y	0.79	31	8	31	8	y	ENSMUSG00000022974.13	Paxbp1	chr16	protein_coding	PAX3 and PAX7 binding protein 1
known_NIR_7499	chr16	91181912	91184832	+	91181912;91182953	91182830;91184832	ES	ENSMUST00000023693.14	known	0.01	2	343.5	2	325;362	y	0.01	4	376.0	4	310;442	y	0.02	8	359.0	8	313;405	y	0.01	6	395.5	6	389;402	y	0.01	4	496.0	4	444;548	y	0.00	1	252.0	1	237;267	n	0.02	8	464.0	8	429;499	y	0.01	2	290.5	2	255;326	y	0.01	2	347.5	2	319;376	y	0.01	5	522.5	5	507;538	y	0.02	8	352.0	8	316;388	y	0.01	4	419.5	4	379;460	y	ENSMUSG00000022971.19	Ifnar2	chr16	protein_coding	interferon (alpha and beta) receptor 2
known_NIR_7500	chr16	91190801	91200598	+	91190801;91196233	91196106;91200598	ES	ENSMUST00000023693.14	known	0.00	0	11.0	0	17;5	n	0.10	2	19.0	2	26;12	y	0.08	2	23.5	2	28;19	y	0.04	1	21.5	1	32;11	n	0.00	0	15.0	0	14;16	n	0.00	0	7.0	0	6;8	n	0.08	2	24.5	2	35;14	y	0.00	0	13.0	0	15;11	n	0.00	0	20.0	0	22;18	n	0.00	0	24.0	0	37;11	n	0.00	0	15.0	0	21;9	n	0.00	0	26.5	0	29;24	n	ENSMUSG00000022971.19	Ifnar2	chr16	protein_coding	interferon (alpha and beta) receptor 2
known_NIR_7501	chr16	91286707	91292037	+	91286707;91289697	91289519;91292037	ES	ENSMUST00000023689.11	known	0.00	0	32.0	0	39;25	n	0.00	0	19.0	0	19;19	n	0.00	0	63.5	0	63;64	n	0.00	0	42.5	0	34;51	n	0.00	0	74.5	0	62;87	n	0.04	2	43.0	2	54;32	y	0.02	1	47.0	1	48;46	n	0.02	1	45.0	1	44;46	n	0.00	0	30.5	0	28;33	n	0.00	0	48.5	0	43;54	n	0.00	0	31.0	0	26;36	n	0.00	0	50.0	0	42;58	n	ENSMUSG00000022967.14	Ifnar1	chr16	protein_coding	interferon (alpha and beta) receptor 1
known_NIR_7502	chr16	91286707	91292037	+	91289697	91292037	5pMXE	ENSMUST00000231604.2	known	0.00	0	25	0	25	n	0.00	0	19	0	19	n	0.00	0	64	0	64	n	0.00	0	51	0	51	n	0.00	0	87	0	87	n	0.06	2	32	2	32	y	0.02	1	46	1	46	n	0.02	1	46	1	46	n	0.00	0	33	0	33	n	0.00	0	54	0	54	n	0.00	0	36	0	36	n	0.00	0	58	0	58	n	ENSMUSG00000022967.14	Ifnar1	chr16	protein_coding	interferon (alpha and beta) receptor 1
known_NIR_7503	chr16	91302302	91303415	+	91302892	91303415	A5SS	ENSMUST00000123196.9	known	0.50	5	5	5	5	y	0.62	8	5	8	5	y	0.41	7	10	7	10	y	0.25	2	6	2	6	n	0.40	6	9	6	9	y	0.33	2	4	2	4	n	0.55	6	5	6	5	y	0.54	7	6	7	6	y	0.29	2	5	2	5	n	0.63	12	7	12	7	y	0.78	7	2	7	2	n	0.50	7	7	7	7	y	ENSMUSG00000022967.14	Ifnar1	chr16	protein_coding	interferon (alpha and beta) receptor 1
known_NIR_7504	chr16	91302519	91303415	+	91302302	91303415	A5SS	ENSMUST00000117748.8	known	0.00	0	5	0	5	n	0.11	1	8	1	8	n	0.00	0	7	0	7	n	0.60	3	2	3	2	n	0.14	1	6	1	6	n	0.00	0	2	0	2	n	0.25	2	6	2	6	n	0.00	0	7	0	7	n	0.50	2	2	2	2	n	0.14	2	12	2	12	y	0.00	0	7	0	7	n	0.00	0	7	0	7	n	ENSMUSG00000022967.14	Ifnar1	chr16	protein_coding	interferon (alpha and beta) receptor 1
known_NIR_7505	chr16	91414267	91415476	-	91414267	91415646	A5SS	ENSMUST00000049244.10	known	0.00	0	4	0	4	n	0.40	2	3	2	3	n	0.33	3	6	3	6	n	0.08	1	11	1	11	n	0.20	3	12	3	12	y	0.00	0	2	0	2	n	0.13	2	13	2	13	y	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.06	1	16	1	16	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	ENSMUSG00000039763.11	Dnajc28	chr16	protein_coding	DnaJ heat shock protein family (Hsp40) member C28
known_NIR_7506	chr16	91418663	91418735	-	91418636	91418735	A3SS	ENSMUST00000023684.14	known	0.00	0	111	0	111	n	0.02	2	119	2	119	y	0.00	0	90	0	90	n	0.00	0	84	0	84	n	0.00	0	148	0	148	n	0.00	0	47	0	47	n	0.01	1	144	1	144	n	0.00	0	62	0	62	n	0.00	0	104	0	104	n	0.00	0	126	0	126	n	0.01	1	134	1	134	n	0.02	2	126	2	126	y	ENSMUSG00000022962.16	Gart	chr16	protein_coding	phosphoribosylglycinamide formyltransferase
known_NIR_7507	chr16	91440031	91443772	-	91440034	91443772	A3SS	ENSMUST00000023684.14	known	0.48	11	12	11	12	y	0.44	8	10	8	10	y	0.44	11	14	11	14	y	0.48	11	12	11	12	y	0.36	12	21	12	21	y	0.40	6	9	6	9	y	0.39	11	17	11	17	y	0.50	7	7	7	7	y	0.36	5	9	5	9	y	0.45	9	11	9	11	y	0.46	6	7	6	7	y	0.40	8	12	8	12	y	ENSMUSG00000022962.16	Gart	chr16	protein_coding	phosphoribosylglycinamide formyltransferase
known_NIR_7508	chr16	91440034	91443615	-	91440034	91443772	A5SS	ENSMUST00000023684.14	known	0.29	5	12	5	12	y	0.00	0	10	0	10	n	0.22	4	14	4	14	y	0.25	4	12	4	12	y	0.12	3	21	3	21	y	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.21	3	11	3	11	y	0.00	0	7	0	7	n	0.00	0	12	0	12	n	ENSMUSG00000022962.16	Gart	chr16	protein_coding	phosphoribosylglycinamide formyltransferase
known_NIR_7509	chr16	91459149	91459380	+	91459149	91461086	A3SS	ENSMUST00000117633.8	known	0.27	38	104	38	104	y	0.32	38	82	38	82	y	0.30	70	164	70	164	y	0.27	47	125	47	125	y	0.30	66	154	66	154	y	0.23	32	106	32	106	y	0.39	69	110	69	110	y	0.21	24	90	24	90	y	0.33	42	87	42	87	y	0.27	53	141	53	141	y	0.34	37	71	37	71	y	0.26	56	162	56	162	y	ENSMUSG00000022961.19	Son	chr16	protein_coding	Son DNA binding protein
known_NIR_7510	chr16	91461710	91461808	+	91461710	91467352	A3SS	ENSMUST00000117633.8	known	0.06	7	106	7	106	y	0.08	8	90	8	90	y	0.08	12	146	12	146	y	0.08	9	104	9	104	y	0.10	16	138	16	138	y	0.08	8	95	8	95	y	0.10	13	117	13	117	y	0.09	8	78	8	78	y	0.16	16	83	16	83	y	0.09	11	110	11	110	y	0.08	8	93	8	93	y	0.05	7	142	7	142	y	ENSMUSG00000022961.19	Son	chr16	protein_coding	Son DNA binding protein
known_NIR_7511	chr16	91468353	91468836	+	91468353	91471583	A3SS	ENSMUST00000140312.8	known	0.00	0	5	0	5	n	0.12	1	7	1	7	n	0.54	19	16	19	16	y	0.30	3	7	3	7	y	0.60	15	10	15	10	y	0.65	17	9	17	9	y	0.58	7	5	7	5	y	0.53	8	7	8	7	y	0.33	5	10	5	10	y	0.15	2	11	2	11	y	0.44	4	5	4	5	n	0.15	2	11	2	11	y	ENSMUSG00000022961.19	Son	chr16	protein_coding	Son DNA binding protein
known_NIR_7512	chr16	91468353	91468836	+	91468353	91472289	A3SS	ENSMUST00000117633.8	known	0.00	0	69	0	69	n	0.01	1	72	1	72	n	0.20	19	75	19	75	y	0.03	3	90	3	90	y	0.16	15	79	15	79	y	0.29	17	42	17	42	y	0.08	7	76	7	76	y	0.13	8	52	8	52	y	0.07	5	70	5	70	y	0.02	2	92	2	92	y	0.08	4	48	4	48	y	0.02	2	86	2	86	y	ENSMUSG00000022961.19	Son	chr16	protein_coding	Son DNA binding protein
known_NIR_7513	chr16	91468353	91472289	+	91471662	91472289	A5SS&ES	ENSMUST00000147891.8	known	0.69	69	31	69	31	y	0.71	72	29	72	29	y	0.46	75	89	75	89	y	0.77	90	27	90	27	y	0.62	79	48	79	48	y	0.39	42	66	42	66	y	0.60	76	51	76	51	y	0.55	52	43	52	43	y	0.60	70	46	70	46	y	0.66	92	47	92	47	y	0.59	48	34	48	34	y	0.69	86	38	86	38	y	ENSMUSG00000022961.19	Son	chr16	protein_coding	Son DNA binding protein
known_NIR_7514	chr16	91468353;91471662	91471583;91472289	+	91468353	91472289	cassetteExon	ENSMUST00000117633.8	known	0.21	18.0	69	5;31	69	y	0.20	18.0	72	7;29	72	y	0.41	52.5	75	16;89	75	y	0.16	17.0	90	7;27	90	y	0.27	29.0	79	10;48	79	y	0.47	37.5	42	9;66	42	y	0.27	28.0	76	5;51	76	y	0.32	25.0	52	7;43	52	y	0.29	28.0	70	10;46	70	y	0.24	29.0	92	11;47	92	y	0.29	19.5	48	5;34	48	y	0.22	24.5	86	11;38	86	y	ENSMUSG00000022961.19	Son	chr16	protein_coding	Son DNA binding protein
known_NIR_7515	chr16	91470910	91471583	+	91468353	91471583	A5SS	ENSMUST00000140312.8	known	0.38	3	5	3	5	n	0.00	0	7	0	7	n	0.30	7	16	7	16	y	0.22	2	7	2	7	n	0.29	4	10	4	10	y	0.36	5	9	5	9	y	0.55	6	5	6	5	y	0.36	4	7	4	7	y	0.00	0	10	0	10	n	0.21	3	11	3	11	y	0.00	0	5	0	5	n	0.21	3	11	3	11	y	ENSMUSG00000022961.19	Son	chr16	protein_coding	Son DNA binding protein
known_NIR_7516	chr16	91474592	91474989	+	91474592	91475042	A3SS	ENSMUST00000117633.8	known	0.58	83	60	83	60	y	0.56	67	53	67	53	y	0.55	107	89	107	89	y	0.54	60	51	60	51	y	0.47	92	102	92	102	y	0.53	61	55	61	55	y	0.54	90	76	90	76	y	0.43	41	55	41	55	y	0.62	73	44	73	44	y	0.54	91	76	91	76	y	0.54	75	64	75	64	y	0.58	91	66	91	66	y	ENSMUSG00000022961.19	Son	chr16	protein_coding	Son DNA binding protein
known_NIR_7517	chr16	91486803	91487592	-	91486803	91496065	A5SS	ENSMUST00000122254.8	known	1.00	28	0	28	0	n	0.98	40	1	40	1	n	0.95	75	4	75	4	y	0.97	31	1	31	1	n	0.97	60	2	60	2	y	0.97	29	1	29	1	n	1.00	58	0	58	0	n	1.00	36	0	36	0	n	0.97	29	1	29	1	n	0.96	43	2	43	2	y	0.92	36	3	36	3	y	0.96	45	2	45	2	y	ENSMUSG00000058240.15	Cryzl1	chr16	protein_coding	crystallin, zeta (quinone reductase)-like 1
known_NIR_7518	chr16	91489592	91489732	-	91489592	91491070	A5SS	ENSMUST00000073466.13	known	0.02	1	48	1	48	n	0.02	1	57	1	57	n	0.05	5	86	5	86	y	0.00	0	30	0	30	n	0.07	4	53	4	53	y	0.00	0	39	0	39	n	0.08	5	61	5	61	y	0.03	1	36	1	36	n	0.05	1	18	1	18	n	0.00	0	49	0	49	n	0.03	1	38	1	38	n	0.02	1	41	1	41	n	ENSMUSG00000058240.15	Cryzl1	chr16	protein_coding	crystallin, zeta (quinone reductase)-like 1
known_NIR_7519	chr16	91491553	91492149	-	91491188	91492149	A3SS	ENSMUST00000073466.13	known	0.13	6	39	6	39	y	0.02	1	41	1	41	n	0.00	0	105	0	105	n	0.06	3	51	3	51	y	0.01	1	82	1	82	n	0.06	3	45	3	45	y	0.02	1	61	1	61	n	0.02	1	50	1	50	n	0.26	8	23	8	23	y	0.05	3	52	3	52	y	0.08	4	45	4	45	y	0.08	5	59	5	59	y	ENSMUSG00000058240.15	Cryzl1	chr16	protein_coding	crystallin, zeta (quinone reductase)-like 1
known_NIR_7520	chr16	91492247	91496065	-	91486803	91496065	A3SS	ENSMUST00000122254.8	known	1.00	56	0	56	0	n	0.98	45	1	45	1	n	0.96	85	4	85	4	y	0.98	58	1	58	1	n	0.98	89	2	89	2	y	0.98	45	1	45	1	n	1.00	60	0	60	0	n	1.00	46	0	46	0	n	0.98	48	1	48	1	n	0.98	84	2	84	2	y	0.95	57	3	57	3	y	0.98	80	2	80	2	y	ENSMUSG00000058240.15	Cryzl1	chr16	protein_coding	crystallin, zeta (quinone reductase)-like 1
known_NIR_7521	chr16	91504181	91509083	-	91504181	91505717	5pMXE	ENSMUST00000144472.8	known	0.00	0	45	0	45	n	0.00	0	34	0	34	n	0.12	7	52	7	52	y	0.00	0	39	0	39	n	0.00	0	47	0	47	n	0.05	2	36	2	36	y	0.02	1	45	1	45	n	0.09	3	29	3	29	y	0.00	0	29	0	29	n	0.00	0	43	0	43	n	0.00	0	28	0	28	n	0.00	0	55	0	55	n	ENSMUSG00000058240.15	Cryzl1	chr16	protein_coding	crystallin, zeta (quinone reductase)-like 1
known_NIR_7522	chr16	91504181	91509083	-	91504181;91505761	91505717;91509083	ES	ENSMUST00000073466.13	known	0.00	0	42.0	0	45;39	n	0.00	0	34.5	0	34;35	n	0.10	7	61.0	7	52;70	y	0.00	0	31.5	0	39;24	n	0.00	0	45.0	0	47;43	n	0.05	2	35.0	2	36;34	y	0.03	1	38.5	1	45;32	n	0.11	3	24.5	3	29;20	y	0.00	0	26.5	0	29;24	n	0.00	0	35.5	0	43;28	n	0.00	0	27.0	0	28;26	n	0.00	0	48.0	0	55;41	n	ENSMUSG00000058240.15	Cryzl1	chr16	protein_coding	crystallin, zeta (quinone reductase)-like 1
known_NIR_7523	chr16	91505761	91509083	-	91498093	91509083	A3SS	ENSMUST00000122254.8	known	0.95	39	2	39	2	y	1.00	35	0	35	0	n	0.99	70	1	70	1	n	1.00	24	0	24	0	n	1.00	43	0	43	0	n	1.00	34	0	34	0	n	1.00	32	0	32	0	n	1.00	20	0	20	0	n	1.00	24	0	24	0	n	1.00	28	0	28	0	n	1.00	26	0	26	0	n	1.00	41	0	41	0	n	ENSMUSG00000058240.15	Cryzl1	chr16	protein_coding	crystallin, zeta (quinone reductase)-like 1
known_NIR_7524	chr16	91509155	91514292	-	91509155;91511714	91511637;91514292	ES	ENSMUST00000073466.13	known	0.00	0	40.0	0	44;36	n	0.00	0	29.0	0	27;31	n	0.00	0	64.0	0	68;60	n	0.00	0	33.0	0	41;25	n	0.00	0	49.0	0	51;47	n	0.00	0	32.0	0	35;29	n	0.00	0	39.0	0	42;36	n	0.00	0	26.5	0	27;26	n	0.00	0	19.0	0	23;15	n	0.00	0	41.0	0	48;34	n	0.07	2	28.0	2	34;22	y	0.03	2	56.5	2	67;46	y	ENSMUSG00000058240.15	Cryzl1	chr16	protein_coding	crystallin, zeta (quinone reductase)-like 1
known_NIR_7525	chr16	91509155	91514292	-	91511714	91514292	3pMXE	ENSMUST00000128975.8	known	0.00	0	36	0	36	n	0.00	0	31	0	31	n	0.00	0	60	0	60	n	0.00	0	25	0	25	n	0.00	0	47	0	47	n	0.00	0	29	0	29	n	0.00	0	36	0	36	n	0.00	0	26	0	26	n	0.00	0	15	0	15	n	0.00	0	34	0	34	n	0.08	2	22	2	22	y	0.04	2	46	2	46	y	ENSMUSG00000058240.15	Cryzl1	chr16	protein_coding	crystallin, zeta (quinone reductase)-like 1
known_NIR_7526	chr16	91512294	91514292	-	91511714	91514292	A3SS	ENSMUST00000073466.13	known	0.00	0	36	0	36	n	0.00	0	31	0	31	n	0.00	0	60	0	60	n	0.00	0	25	0	25	n	0.04	2	47	2	47	y	0.00	0	29	0	29	n	0.05	2	36	2	36	y	0.00	0	26	0	26	n	0.00	0	15	0	15	n	0.08	3	34	3	34	y	0.00	0	22	0	22	n	0.00	0	46	0	46	n	ENSMUSG00000058240.15	Cryzl1	chr16	protein_coding	crystallin, zeta (quinone reductase)-like 1
known_NIR_7527	chr16	91647853	91649751	+	91647853	91650583	A3SS	ENSMUST00000114001.8	known	0.00	0	11	0	11	n	0.14	3	18	3	18	y	0.00	0	38	0	38	n	0.00	0	25	0	25	n	0.03	1	34	1	34	n	0.00	0	13	0	13	n	0.03	1	29	1	29	n	0.11	3	24	3	24	y	0.14	1	6	1	6	n	0.12	3	22	3	22	y	0.00	0	20	0	20	n	0.00	0	13	0	13	n	ENSMUSG00000022957.21	Itsn1	chr16	protein_coding	intersectin 1 (SH3 domain protein 1A)
known_NIR_7528	chr16	91651543	91655097	+	91651543	91660145	A3SS	ENSMUST00000113996.8	known	1.00	34	0	34	0	n	1.00	20	0	20	0	n	0.98	51	1	51	1	n	1.00	20	0	20	0	n	1.00	55	0	55	0	n	1.00	24	0	24	0	n	1.00	59	0	59	0	n	0.95	36	2	36	2	y	0.96	25	1	25	1	n	1.00	36	0	36	0	n	0.90	27	3	27	3	y	0.96	22	1	22	1	n	ENSMUSG00000022957.21	Itsn1	chr16	protein_coding	intersectin 1 (SH3 domain protein 1A)
known_NIR_7529	chr16	91651543	91658082	+	91651543;91655263	91655097;91658082	ES	ENSMUST00000114001.8	known	0.00	0	26.5	0	34;19	n	0.00	0	18.5	0	20;17	n	0.02	1	50.5	1	51;50	n	0.00	0	17.5	0	20;15	n	0.00	0	45.0	0	55;35	n	0.11	3	25.0	3	24;26	y	0.00	0	45.5	0	59;32	n	0.06	2	30.0	2	36;24	y	0.00	0	21.5	0	25;18	n	0.00	0	29.5	0	36;23	n	0.00	0	21.5	0	27;16	n	0.00	0	16.5	0	22;11	n	ENSMUSG00000022957.21	Itsn1	chr16	protein_coding	intersectin 1 (SH3 domain protein 1A)
known_NIR_7530	chr16	91651543;91658127	91658082;91660145	+	91651543	91660145	cassetteExon	ENSMUST00000113996.8	known	1.00	10.5	0	0;21	0	n	1.00	9.5	0	0;19	0	n	0.97	30.5	1	1;60	1	n	1.00	5.5	0	0;11	0	n	1.00	19.5	0	0;39	0	n	1.00	15.5	0	3;28	0	n	1.00	17.0	0	0;34	0	n	0.87	13.0	2	2;24	2	y	0.90	9.0	1	0;18	1	n	1.00	11.5	0	0;23	0	n	0.70	7.0	3	0;14	3	n	0.86	6.0	1	0;12	1	n	ENSMUSG00000022957.21	Itsn1	chr16	protein_coding	intersectin 1 (SH3 domain protein 1A)
known_NIR_7531	chr16	91666697	91684288	+	91666697	91667081	3pMXE	ENSMUST00000114001.8	known	0.06	2	29	2	29	y	0.00	0	39	0	39	n	0.00	0	93	0	93	n	0.00	0	25	0	25	n	0.00	0	41	0	41	n	0.00	0	49	0	49	n	0.00	0	64	0	64	n	0.00	0	41	0	41	n	0.00	0	25	0	25	n	0.03	1	33	1	33	n	0.00	0	39	0	39	n	0.03	1	37	1	37	n	ENSMUSG00000022957.21	Itsn1	chr16	protein_coding	intersectin 1 (SH3 domain protein 1A)
known_NIR_7532	chr16	91723459	91725787	-	91723459	91723741	5pMXE	ENSMUST00000159295.8	known	0.00	1	863	1	863	n	0.00	3	913	3	913	y	0.00	0	818	0	818	n	0.00	0	919	0	919	n	0.00	0	960	0	960	n	0.00	0	456	0	456	n	0.00	1	1208	1	1208	n	0.00	1	483	1	483	n	0.00	2	904	2	904	y	0.00	1	1348	1	1348	n	0.00	1	1216	1	1216	n	0.00	2	1281	2	1281	y	ENSMUSG00000116933.2	Atp5o	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit
known_NIR_7533	chr16	91723459	91725787	-	91723459;91723870	91723741;91725787	ES	ENSMUST00000023677.10	known	0.00	1	744.5	1	863;626	n	0.00	3	756.0	3	913;599	y	0.00	0	689.5	0	818;561	n	0.00	0	761.0	0	919;603	n	0.00	0	823.5	0	960;687	n	0.00	0	428.5	0	456;401	n	0.00	1	1017.0	1	1208;826	n	0.00	1	422.5	1	483;362	n	0.00	2	765.0	2	904;626	y	0.00	1	1121.0	1	1348;894	n	0.00	1	1024.0	1	1216;832	n	0.00	2	1090.5	2	1281;900	y	ENSMUSG00000022956.12	Atp5o	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit
known_NIR_7534	chr16	91723459	91725787	-	91723870	91725787	3pMXE	ENSMUST00000154661.8	known	0.00	1	626	1	626	n	0.00	3	599	3	599	y	0.00	0	561	0	561	n	0.00	0	603	0	603	n	0.00	0	687	0	687	n	0.00	0	401	0	401	n	0.00	1	826	1	826	n	0.00	1	362	1	362	n	0.00	2	626	2	626	y	0.00	1	894	1	894	n	0.00	1	832	1	832	n	0.00	2	900	2	900	y	ENSMUSG00000022956.12	Atp5o	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit
known_NIR_7535	chr16	91727292	91728136	-	91727292	91728408	A5SS	ENSMUST00000023677.10	known	0.00	0	675	0	675	n	0.00	0	595	0	595	n	0.00	0	642	0	642	n	0.00	0	693	0	693	n	0.00	0	774	0	774	n	0.00	0	417	0	417	n	0.00	0	968	0	968	n	0.00	0	419	0	419	n	0.00	0	683	0	683	n	0.00	0	947	0	947	n	0.00	2	889	2	889	y	0.00	0	907	0	907	n	ENSMUSG00000022956.12	Atp5o	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit
known_NIR_7536	chr16	92194324	92196784	-	92194324	92262721	A5SS	ENSMUST00000060005.15	known	0.52	17	16	17	16	y	0.56	20	16	20	16	y	0.58	33	24	33	24	y	0.40	16	24	16	24	y	0.29	12	30	12	30	y	0.59	16	11	16	11	y	0.46	26	30	26	30	y	0.29	8	20	8	20	y	0.53	8	7	8	7	y	0.41	14	20	14	20	y	0.33	5	10	5	10	y	0.15	3	17	3	17	y	ENSMUSG00000022951.17	Rcan1	chr16	protein_coding	regulator of calcineurin 1
known_NIR_7537	chr16	92410648	92465596	-	92410648;92441233	92441042;92465596	ES	ENSMUST00000023673.14	known	-	-	-	-	-	-	-	-	-	-	-	-	0.36	11	19.5	11	22;17	y	0.00	0	0.5	0	1;0	n	0.00	0	3.0	0	4;2	n	0.00	0	5.0	0	3;7	n	0.00	0	3.0	0	3;3	n	0.29	1	2.5	1	1;4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1.0	0	0;2	n	ENSMUSG00000022952.18	Runx1	chr16	protein_coding	runt related transcription factor 1
known_NIR_7538	chr16	93380572	93382067	-	93380572	93380689	5pMXE	ENSMUST00000233912.2	known	1.00	27	0	27	0	n	0.94	45	3	45	3	y	0.91	10	1	10	1	n	0.94	32	2	32	2	y	0.86	30	5	30	5	y	0.67	2	1	2	1	n	1.00	20	0	20	0	n	0.78	7	2	7	2	n	0.97	30	1	30	1	n	0.97	34	1	34	1	n	0.95	38	2	38	2	y	1.00	42	0	42	0	n	ENSMUSG00000022948.17	Setd4	chr16	protein_coding	SET domain containing 4
known_NIR_7539	chr16	93386973	93387762	-	93386973	93387144	A5SS	ENSMUST00000123756.8	known	0.39	7	11	7	11	y	0.67	14	7	14	7	y	0.75	3	1	3	1	n	0.72	13	5	13	5	y	0.60	6	4	6	4	y	0.50	1	1	1	1	n	0.55	6	5	6	5	y	0.33	1	2	1	2	n	0.55	6	5	6	5	y	0.67	12	6	12	6	y	0.62	16	10	16	10	y	0.21	3	11	3	11	y	ENSMUSG00000022948.17	Setd4	chr16	protein_coding	SET domain containing 4
known_NIR_7540	chr16	93386973;93387174	93387144;93387762	-	93386973	93387762	cassetteExon	ENSMUST00000023669.14	known	0.63	12.0	7	11;13	7	y	0.44	11.0	14	7;15	14	y	0.14	0.5	3	1;0	3	n	0.43	10.0	13	5;15	13	y	0.40	4.0	6	4;4	6	y	0.60	1.5	1	1;2	1	n	0.52	6.5	6	5;8	6	y	0.67	2.0	1	2;2	1	n	0.48	5.5	6	5;6	6	y	0.40	8.0	12	6;10	12	y	0.46	13.5	16	10;17	16	y	0.81	12.5	3	11;14	3	y	ENSMUSG00000022948.17	Setd4	chr16	protein_coding	SET domain containing 4
known_NIR_7541	chr16	93405784	93406687	+	93405784	93406683	A3SS	ENSMUST00000231450.2	known	0.02	9	383	9	383	y	0.03	9	334	9	334	y	0.00	0	132	0	132	n	0.04	14	321	14	321	y	0.00	0	438	0	438	n	0.00	0	88	0	88	n	0.00	0	359	0	359	n	0.02	3	120	3	120	y	0.03	12	375	12	375	y	0.03	14	444	14	444	y	0.00	0	406	0	406	n	0.03	17	505	17	505	y	ENSMUSG00000051483.10	Cbr1	chr16	protein_coding	carbonyl reductase 1
known_NIR_7542	chr16	93527330	93536042	+	93513200	93536042	A5SS	ENSMUST00000045004.11	known	0.00	0	18	0	18	n	0.00	0	8	0	8	n	0.31	4	9	4	9	y	0.08	2	24	2	24	y	0.06	2	32	2	32	y	0.29	2	5	2	5	n	0.05	1	21	1	21	n	0.00	0	13	0	13	n	0.00	0	16	0	16	n	0.00	0	25	0	25	n	0.00	0	17	0	17	n	0.00	0	26	0	26	n	ENSMUSG00000022946.11	Dop1b	chr16	protein_coding	DOP1 leucine zipper like protein B
known_NIR_7543	chr16	93574381;93577335	93577261;93577645	+	93574381	93577645	cassetteExon	ENSMUST00000045004.11	known	0.00	0.0	61	0;0	61	n	0.01	0.5	61	1;0	61	n	0.00	0.0	17	0;0	17	n	0.02	1.0	52	2;0	52	n	0.03	1.5	57	3;0	57	n	0.03	1.0	29	0;2	29	n	0.06	3.5	52	5;2	52	y	0.04	1.5	37	3;0	37	n	0.01	0.5	46	1;0	46	n	0.01	0.5	75	0;1	75	n	0.02	1.5	59	0;3	59	n	0.03	2.0	69	1;3	69	n	ENSMUSG00000022946.11	Dop1b	chr16	protein_coding	DOP1 leucine zipper like protein B
known_NIR_7544	chr16	93590119	93595791	+	93590119	93595794	A3SS	ENSMUST00000045004.11	known	0.59	60	42	60	42	y	0.70	54	23	54	23	y	0.61	17	11	17	11	y	0.61	49	31	49	31	y	0.59	65	45	65	45	y	0.47	16	18	16	18	y	0.65	45	24	45	24	y	0.61	25	16	25	16	y	0.68	28	13	28	13	y	0.61	51	33	51	33	y	0.60	42	28	42	28	y	0.65	66	36	66	36	y	ENSMUSG00000022946.11	Dop1b	chr16	protein_coding	DOP1 leucine zipper like protein B
known_NIR_7545	chr16	93600478	93603276	+	93600478	93603223	A3SS	ENSMUST00000045004.11	known	0.01	1	70	1	70	n	0.00	0	46	0	46	n	0.00	0	20	0	20	n	0.00	0	66	0	66	n	0.05	3	58	3	58	y	0.00	0	24	0	24	n	0.03	2	76	2	76	y	0.00	0	29	0	29	n	0.00	0	27	0	27	n	0.04	3	74	3	74	y	0.00	0	65	0	65	n	0.00	0	80	0	80	n	ENSMUSG00000022946.11	Dop1b	chr16	protein_coding	DOP1 leucine zipper like protein B
known_NIR_7546	chr16	93600478	93603293	+	93600478	93603223	A3SS	ENSMUST00000045004.11	known	0.09	7	70	7	70	y	0.15	8	46	8	46	y	0.09	2	20	2	20	y	0.13	10	66	10	66	y	0.11	7	58	7	58	y	0.04	1	24	1	24	n	0.05	4	76	4	76	y	0.06	2	29	2	29	y	0.31	12	27	12	27	y	0.07	6	74	6	74	y	0.12	9	65	9	65	y	0.10	9	80	9	80	y	ENSMUSG00000022946.11	Dop1b	chr16	protein_coding	DOP1 leucine zipper like protein B
known_NIR_7547	chr16	93600478	93603293	+	93600478	93603276	A3SS	ENSMUST00000226215.2	known	0.88	7	1	7	1	n	1.00	8	0	8	0	n	1.00	2	0	2	0	n	1.00	10	0	10	0	n	0.70	7	3	7	3	y	1.00	1	0	1	0	n	0.67	4	2	4	2	n	1.00	2	0	2	0	n	1.00	12	0	12	0	n	0.67	6	3	6	3	n	1.00	9	0	9	0	n	1.00	9	0	9	0	n	ENSMUSG00000022946.11	Dop1b	chr16	protein_coding	DOP1 leucine zipper like protein B
known_NIR_7548	chr16	93641214	93642028	+	93641936	93642028	5pMXE	ENSMUST00000202663.2	known	0.79	15	4	15	4	y	0.68	15	7	15	7	y	0.92	24	2	24	2	y	0.81	17	4	17	4	y	0.84	16	3	16	3	y	0.92	12	1	12	1	n	0.64	7	4	7	4	y	0.94	17	1	17	1	n	0.82	9	2	9	2	y	0.77	10	3	10	3	y	0.78	7	2	7	2	n	0.82	9	2	9	2	y	ENSMUSG00000039456.11	Morc3	chr16	protein_coding	microrchidia 3
known_NIR_7549	chr16	93641214;93641936	93641841;93642028	+	93641214	93642028	cassetteExon	ENSMUST00000044068.10	known	0.21	4.0	15	4;4	15	y	0.19	3.5	15	0;7	15	n	0.04	1.0	24	0;2	24	n	0.13	2.5	17	1;4	17	n	0.14	2.5	16	2;3	16	y	0.08	1.0	12	1;1	12	n	0.30	3.0	7	2;4	7	y	0.06	1.0	17	1;1	17	n	0.10	1.0	9	0;2	9	n	0.13	1.5	10	0;3	10	n	0.12	1.0	7	0;2	7	n	0.10	1.0	9	0;2	9	n	ENSMUSG00000039456.11	Morc3	chr16	protein_coding	microrchidia 3
known_NIR_7550	chr16	93659391	93659529	+	93659424	93659529	A5SS	ENSMUST00000044068.10	known	0.35	8	15	8	15	y	0.22	4	14	4	14	y	0.04	1	26	1	26	n	0.04	1	23	1	23	n	0.18	5	23	5	23	y	0.00	0	8	0	8	n	0.00	0	18	0	18	n	0.06	1	17	1	17	n	0.00	0	12	0	12	n	0.26	7	20	7	20	y	0.12	4	28	4	28	y	0.10	2	19	2	19	y	ENSMUSG00000039456.11	Morc3	chr16	protein_coding	microrchidia 3
known_NIR_7551	chr16	93716925	93726257	-	93716925	93726197	A5SS	ENSMUST00000177648.8	known	0.47	29	33	29	33	y	0.47	27	30	27	30	y	0.56	154	120	154	120	y	0.36	21	38	21	38	y	0.55	62	51	62	51	y	0.43	52	70	52	70	y	0.44	26	33	26	33	y	0.47	41	46	41	46	y	0.59	24	17	24	17	y	0.39	23	36	23	36	y	0.35	15	28	15	28	y	0.37	22	37	22	37	y	ENSMUSG00000047109.14	Cldn14	chr16	protein_coding	claudin 14
known_NIR_7552	chr16	94171051	94171464	-	94171051	94171225	A5SS	ENSMUST00000113910.8	known	0.71	27	11	27	11	y	0.92	45	4	45	4	y	0.74	42	15	42	15	y	0.75	30	10	30	10	y	0.59	40	28	40	28	y	0.80	48	12	48	12	y	0.79	56	15	56	15	y	0.68	34	16	34	16	y	0.74	25	9	25	9	y	0.69	29	13	29	13	y	0.78	28	8	28	8	y	0.71	24	10	24	10	y	ENSMUSG00000022940.18	Pigp	chr16	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class P
known_NIR_7553	chr16	94171051	94171600	-	94171051	94171225	5pMXE	ENSMUST00000113910.8	known	0.31	5	11	5	11	y	0.50	4	4	4	4	n	0.56	19	15	19	15	y	0.47	9	10	9	10	y	0.30	12	28	12	28	y	0.37	7	12	7	12	y	0.42	11	15	11	15	y	0.47	14	16	14	16	y	0.36	5	9	5	9	y	0.62	21	13	21	13	y	0.38	5	8	5	8	y	0.47	9	10	9	10	y	ENSMUSG00000022940.18	Pigp	chr16	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class P
known_NIR_7554	chr16	94171051	94171600	-	94171051	94171464	5pMXE	ENSMUST00000113906.9	known	0.16	5	27	5	27	y	0.08	4	45	4	45	y	0.31	19	42	19	42	y	0.23	9	30	9	30	y	0.23	12	40	12	40	y	0.13	7	48	7	48	y	0.16	11	56	11	56	y	0.29	14	34	14	34	y	0.17	5	25	5	25	y	0.42	21	29	21	29	y	0.15	5	28	5	28	y	0.27	9	24	9	24	y	ENSMUSG00000022940.18	Pigp	chr16	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class P
known_NIR_7555	chr16	94171051	94171754	-	94171051	94171225	5pMXE	ENSMUST00000113910.8	known	0.15	2	11	2	11	y	0.20	1	4	1	4	n	0.17	3	15	3	15	y	0.00	0	10	0	10	n	0.18	6	28	6	28	y	0.20	3	12	3	12	y	0.06	1	15	1	15	n	0.11	2	16	2	16	y	0.31	4	9	4	9	y	0.19	3	13	3	13	y	0.20	2	8	2	8	y	0.38	6	10	6	10	y	ENSMUSG00000022940.18	Pigp	chr16	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class P
known_NIR_7556	chr16	94171051	94171754	-	94171051	94171464	5pMXE	ENSMUST00000113906.9	known	0.07	2	27	2	27	y	0.02	1	45	1	45	n	0.07	3	42	3	42	y	0.00	0	30	0	30	n	0.13	6	40	6	40	y	0.06	3	48	3	48	y	0.02	1	56	1	56	n	0.06	2	34	2	34	y	0.14	4	25	4	25	y	0.09	3	29	3	29	y	0.07	2	28	2	28	y	0.20	6	24	6	24	y	ENSMUSG00000022940.18	Pigp	chr16	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class P
known_NIR_7557	chr16	94171051	94171754	-	94171051	94171600	A5SS	ENSMUST00000113914.8	known	0.29	2	5	2	5	n	0.20	1	4	1	4	n	0.14	3	19	3	19	y	0.00	0	9	0	9	n	0.33	6	12	6	12	y	0.30	3	7	3	7	y	0.08	1	11	1	11	n	0.12	2	14	2	14	y	0.44	4	5	4	5	n	0.12	3	21	3	21	y	0.29	2	5	2	5	n	0.40	6	9	6	9	y	ENSMUSG00000022940.18	Pigp	chr16	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class P
known_NIR_7558	chr16	94171051	94172603	-	94171051	94171225	5pMXE	ENSMUST00000113910.8	known	0.31	5	11	5	11	y	0.75	12	4	12	4	y	0.06	1	15	1	15	n	0.55	12	10	12	10	y	0.20	7	28	7	28	y	0.08	1	12	1	12	n	0.29	6	15	6	15	y	0.06	1	16	1	16	n	0.50	9	9	9	9	y	0.69	29	13	29	13	y	0.43	6	8	6	8	y	0.47	9	10	9	10	y	ENSMUSG00000022940.18	Pigp	chr16	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class P
known_NIR_7559	chr16	94171051	94172603	-	94171051	94171464	5pMXE	ENSMUST00000113906.9	known	0.16	5	27	5	27	y	0.21	12	45	12	45	y	0.02	1	42	1	42	n	0.29	12	30	12	30	y	0.15	7	40	7	40	y	0.02	1	48	1	48	n	0.10	6	56	6	56	y	0.03	1	34	1	34	n	0.26	9	25	9	25	y	0.50	29	29	29	29	y	0.18	6	28	6	28	y	0.27	9	24	9	24	y	ENSMUSG00000022940.18	Pigp	chr16	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class P
known_NIR_7560	chr16	94171051	94172603	-	94171051	94171600	5pMXE	ENSMUST00000113914.8	known	0.50	5	5	5	5	y	0.75	12	4	12	4	y	0.05	1	19	1	19	n	0.57	12	9	12	9	y	0.37	7	12	7	12	y	0.12	1	7	1	7	n	0.35	6	11	6	11	y	0.07	1	14	1	14	n	0.64	9	5	9	5	y	0.58	29	21	29	21	y	0.55	6	5	6	5	y	0.50	9	9	9	9	y	ENSMUSG00000022940.18	Pigp	chr16	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class P
known_NIR_7561	chr16	94171051	94172603	-	94171051	94171754	5pMXE	ENSMUST00000113905.8	known	0.71	5	2	5	2	n	0.92	12	1	12	1	n	0.25	1	3	1	3	n	1.00	12	0	12	0	n	0.54	7	6	7	6	y	0.25	1	3	1	3	n	0.86	6	1	6	1	n	0.33	1	2	1	2	n	0.69	9	4	9	4	y	0.91	29	3	29	3	y	0.75	6	2	6	2	n	0.60	9	6	9	6	y	ENSMUSG00000022940.18	Pigp	chr16	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class P
known_NIR_7562	chr16	94171830	94204173	+	94194033	94204173	A5SS&ES	ENSMUST00000117648.9	known	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.23	3	10	3	10	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.25	2	6	2	6	n	0.00	0	7	0	7	n	ENSMUSG00000040785.20	Ttc3	chr16	protein_coding	tetratricopeptide repeat domain 3
known_NIR_7563	chr16	94184925	94185643	+	94184925;94185247	94185205;94185643	ES	ENSMUST00000117648.9	known	1.00	2	0.0	2	0;0	n	0.60	3	2.0	3	2;2	n	0.32	3	6.5	3	5;8	y	0.55	3	2.5	3	1;4	n	0.53	8	7.0	8	7;7	y	0.14	1	6.0	1	5;7	n	0.74	14	5.0	14	5;5	y	0.31	2	4.5	2	5;4	y	0.40	2	3.0	2	0;6	n	0.59	8	5.5	8	7;4	y	0.57	4	3.0	4	4;2	y	0.60	6	4.0	6	3;5	y	ENSMUSG00000040785.20	Ttc3	chr16	protein_coding	tetratricopeptide repeat domain 3
known_NIR_7564	chr16	94186282	94189124	+	94186282;94188249	94188196;94189124	ES	ENSMUST00000117648.9	known	0.00	0	4.5	0	3;6	n	0.00	0	4.0	0	5;3	n	0.00	0	4.5	0	5;4	n	0.00	0	4.0	0	2;6	n	0.00	0	3.0	0	3;3	n	0.00	0	3.0	0	4;2	n	0.00	0	0.5	0	1;0	n	0.26	3	8.5	3	5;12	y	0.33	1	2.0	1	2;2	n	0.00	0	5.0	0	6;4	n	0.00	0	2.5	0	3;2	n	0.00	0	5.5	0	6;5	n	ENSMUSG00000040785.20	Ttc3	chr16	protein_coding	tetratricopeptide repeat domain 3
known_NIR_7565	chr16	94204227	94210543	+	94204227;94209575	94209413;94210543	ES	ENSMUST00000117648.9	known	0.00	0	3.5	0	4;3	n	0.00	0	3.5	0	4;3	n	0.00	0	7.0	0	5;9	n	0.24	2	6.5	2	7;6	y	0.00	0	9.5	0	5;14	n	0.00	0	6.5	0	4;9	n	0.29	3	7.5	3	4;11	y	0.36	2	3.5	2	2;5	n	0.22	1	3.5	1	1;6	n	0.19	2	8.5	2	4;13	y	0.00	0	4.5	0	3;6	n	0.31	2	4.5	2	2;7	y	ENSMUSG00000040785.20	Ttc3	chr16	protein_coding	tetratricopeptide repeat domain 3
known_NIR_7566	chr16	94204227;94209760	94209413;94210543	+	94204227	94210543	cassetteExon	ENSMUST00000150346.8	known	1.00	2.5	0	4;1	0	n	1.00	2.0	0	4;0	0	n	1.00	2.5	0	5;0	0	n	0.71	5.0	2	7;3	2	y	1.00	2.5	0	5;0	0	n	1.00	3.0	0	4;2	0	n	0.40	2.0	3	4;0	3	n	0.33	1.0	2	2;0	2	n	0.33	0.5	1	1;0	1	n	0.60	3.0	2	4;2	2	n	1.00	1.5	0	3;0	0	n	0.33	1.0	2	2;0	2	n	ENSMUSG00000040785.20	Ttc3	chr16	protein_coding	tetratricopeptide repeat domain 3
known_NIR_7567	chr16	94228786	94232647	+	94228786;94230544	94230218;94232647	ES	ENSMUST00000117648.9	known	0.00	0	10.5	0	7;14	n	0.00	0	7.0	0	7;7	n	0.00	0	18.0	0	18;18	n	0.00	0	10.5	0	13;8	n	0.00	0	17.0	0	16;18	n	0.14	2	12.5	2	6;19	y	0.08	1	11.0	1	12;10	n	0.07	1	13.0	1	15;11	n	0.00	0	8.5	0	7;10	n	0.00	0	13.5	0	13;14	n	0.00	0	4.0	0	2;6	n	0.00	0	9.5	0	12;7	n	ENSMUSG00000040785.20	Ttc3	chr16	protein_coding	tetratricopeptide repeat domain 3
known_NIR_7568	chr16	94236405	94240047	+	94236405	94240044	A3SS	ENSMUST00000117648.9	known	0.00	0	7	0	7	n	0.17	1	5	1	5	n	0.00	0	27	0	27	n	0.11	2	17	2	17	y	0.00	0	23	0	23	n	0.23	3	10	3	10	y	0.09	2	20	2	20	y	0.27	3	8	3	8	y	0.00	0	11	0	11	n	0.00	0	18	0	18	n	0.00	0	7	0	7	n	0.08	1	12	1	12	n	ENSMUSG00000040785.20	Ttc3	chr16	protein_coding	tetratricopeptide repeat domain 3
known_NIR_7569	chr16	94255382	94258180	+	94255382;94257670	94257570;94258180	ES	ENSMUST00000117648.9	known	0.11	2	17.0	2	12;22	y	0.05	1	17.5	1	11;24	n	0.05	2	36.0	2	33;39	y	0.00	0	15.0	0	17;13	n	0.04	1	27.0	1	22;32	n	0.00	0	21.0	0	24;18	n	0.00	0	25.5	0	24;27	n	0.00	0	12.0	0	11;13	n	0.00	0	14.0	0	13;15	n	0.00	0	39.0	0	38;40	n	0.00	0	13.5	0	14;13	n	0.00	0	12.5	0	11;14	n	ENSMUSG00000040785.20	Ttc3	chr16	protein_coding	tetratricopeptide repeat domain 3
known_NIR_7570	chr16	94371393	94460356	+	94371393;94412363	94412278;94460356	ES	ENSMUST00000119878.8	known	0.10	1	9.0	1	5;13	n	1.00	2	0.0	2	0;0	n	0.00	0	8.0	0	4;12	n	0.07	1	13.5	1	14;13	n	0.24	3	9.5	3	7;12	y	0.00	0	5.0	0	3;7	n	0.00	0	8.5	0	10;7	n	0.00	0	7.5	0	3;12	n	0.00	0	10.5	0	8;13	n	0.00	0	16.0	0	13;19	n	0.31	2	4.5	2	3;6	y	0.10	1	9.5	1	5;14	n	ENSMUSG00000022897.16	Dyrk1a	chr16	protein_coding	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a
known_NIR_7571	chr16	94371835	94412278	+	94371393	94412278	A5SS	ENSMUST00000119878.8	known	0.17	1	5	1	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.22	2	7	2	7	n	0.00	0	3	0	3	n	0.17	2	10	2	10	y	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000022897.16	Dyrk1a	chr16	protein_coding	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a
known_NIR_7572	chr16	94460552	94464628	+	94460552	94464601	A3SS	ENSMUST00000119878.8	known	0.56	5	4	5	4	n	0.38	3	5	3	5	n	0.46	11	13	11	13	y	0.79	11	3	11	3	y	0.58	14	10	14	10	y	0.36	4	7	4	7	y	0.42	8	11	8	11	y	0.52	12	11	12	11	y	0.58	11	8	11	8	y	0.65	13	7	13	7	y	0.40	6	9	6	9	y	0.44	12	15	12	15	y	ENSMUSG00000022897.16	Dyrk1a	chr16	protein_coding	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a
known_NIR_7573	chr16	96174347	96187686	+	96174347;96179584	96179285;96187686	ES	ENSMUST00000113794.8	known	0.89	44	5.5	44	7;4	y	0.94	54	3.5	54	4;3	y	0.67	76	37.5	76	42;33	y	0.99	85	0.5	85	1;0	n	0.89	117	15.0	117	21;9	y	0.90	83	9.5	83	9;10	y	0.93	99	7.5	99	5;10	y	0.89	65	8.0	65	6;10	y	0.93	62	4.5	62	6;3	y	0.95	100	5.0	100	6;4	y	0.94	86	5.5	86	6;5	y	0.97	90	2.5	90	5;0	n	ENSMUSG00000000159.17	Igsf5	chr16	protein_coding	immunoglobulin superfamily, member 5
known_NIR_7574	chr16	96199164	96204466	+	96199164	96222935	A3SS	ENSMUST00000113794.8	known	0.61	60	38	60	38	y	0.67	66	32	66	32	y	0.81	129	31	129	31	y	0.64	58	32	58	32	y	0.69	133	60	133	60	y	0.74	75	26	75	26	y	0.64	108	61	108	61	y	0.69	72	32	72	32	y	0.57	57	43	57	43	y	0.61	100	63	100	63	y	0.58	83	60	83	60	y	0.73	84	31	84	31	y	ENSMUSG00000000159.17	Igsf5	chr16	protein_coding	immunoglobulin superfamily, member 5
known_NIR_7575	chr16	97213378	97214549	+	97213386	97214549	A5SS	ENSMUST00000047275.8	known	0.00	0	22	0	22	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.14	3	19	3	19	y	0.14	2	12	2	12	y	0.00	0	19	0	19	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.00	0	14	0	14	n	ENSMUSG00000040605.8	Bace2	chr16	protein_coding	beta-site APP-cleaving enzyme 2
known_NIR_7576	chr16	97337373	97339818	+	97337307	97339818	A5SS	ENSMUST00000190447.8	known	1.00	9	0	9	0	n	0.75	9	3	9	3	y	0.94	16	1	16	1	n	1.00	6	0	6	0	n	1.00	11	0	11	0	n	1.00	10	0	10	0	n	0.91	20	2	20	2	y	1.00	7	0	7	0	n	1.00	10	0	10	0	n	1.00	2	0	2	0	n	0.89	8	1	8	1	n	0.92	12	1	12	1	n	ENSMUSG00000023341.16	Mx2	chr16	polymorphic_pseudogene	MX dynamin-like GTPase 2
known_NIR_7577	chr16	97600837	97604616	-	97600837	97604910	A5SS	ENSMUST00000095849.10	known	0.00	0	4	0	4	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.50	2	2	2	2	n	0.40	4	6	4	6	y	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.22	2	7	2	7	n	0.25	1	3	1	3	n	0.33	1	2	1	2	n	ENSMUSG00000014039.19	Prdm15	chr16	protein_coding	PR domain containing 15
known_NIR_7578	chr16	97660776	97661536	-	97660776	97669792	A5SS	ENSMUST00000170757.3	known	0.00	0	135	0	135	n	0.01	1	101	1	101	n	0.04	2	50	2	50	y	0.00	0	129	0	129	n	0.00	0	164	0	164	n	0.00	0	32	0	32	n	0.01	2	173	2	173	y	0.06	3	45	3	45	y	0.03	3	107	3	107	y	0.01	1	167	1	167	n	0.00	0	103	0	103	n	0.00	0	144	0	144	n	ENSMUSG00000045975.9	C2cd2	chr16	protein_coding	C2 calcium-dependent domain containing 2
known_NIR_7579	chr16	97660776	97665954	-	97660776	97669792	A5SS	ENSMUST00000170757.3	known	0.00	0	135	0	135	n	0.00	0	101	0	101	n	0.00	0	50	0	50	n	0.00	0	129	0	129	n	0.00	0	164	0	164	n	0.00	0	32	0	32	n	0.03	5	173	5	173	y	0.00	0	45	0	45	n	0.00	0	107	0	107	n	0.00	0	167	0	167	n	0.00	0	103	0	103	n	0.00	0	144	0	144	n	ENSMUSG00000045975.9	C2cd2	chr16	protein_coding	C2 calcium-dependent domain containing 2
known_NIR_7580	chr16	97670101	97671353	-	97670116	97671353	A3SS	ENSMUST00000170757.3	known	0.05	7	145	7	145	y	0.00	0	122	0	122	n	0.00	0	103	0	103	n	0.02	4	162	4	162	y	0.03	8	234	8	234	y	0.00	0	50	0	50	n	0.00	0	208	0	208	n	0.02	1	59	1	59	n	0.00	0	168	0	168	n	0.03	6	203	6	203	y	0.00	0	177	0	177	n	0.00	0	187	0	187	n	ENSMUSG00000045975.9	C2cd2	chr16	protein_coding	C2 calcium-dependent domain containing 2
known_NIR_7581	chr16	97687410	97691206	-	97687410	97691214	A5SS	ENSMUST00000170757.3	known	0.04	4	92	4	92	y	0.05	4	70	4	70	y	0.06	5	74	5	74	y	0.04	5	134	5	134	y	0.05	8	149	8	149	y	0.00	0	39	0	39	n	0.05	7	141	7	141	y	0.06	3	47	3	47	y	0.02	2	107	2	107	y	0.06	9	150	9	150	y	0.10	11	96	11	96	y	0.06	8	137	8	137	y	ENSMUSG00000045975.9	C2cd2	chr16	protein_coding	C2 calcium-dependent domain containing 2
known_NIR_7582	chr16	97752069	97754128	-	97752069	97752670	A5SS	ENSMUST00000052089.9	known	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.14	3	18	3	18	y	0.00	0	10	0	10	n	0.25	3	9	3	9	y	0.11	2	16	2	16	y	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	ENSMUSG00000046962.17	Zbtb21	chr16	protein_coding	zinc finger and BTB domain containing 21
known_NIR_7583	chr16	97754293	97763614	-	97754293	97757958	A5SS&ES	ENSMUST00000231560.2	known	0.75	3	1	3	1	n	0.09	1	10	1	10	n	0.31	4	9	4	9	y	0.25	1	3	1	3	n	0.09	1	10	1	10	n	0.22	2	7	2	7	n	0.33	1	2	1	2	n	0.10	2	18	2	18	y	0.20	2	8	2	8	y	0.25	1	3	1	3	n	0.17	1	5	1	5	n	0.00	0	5	0	5	n	ENSMUSG00000046962.17	Zbtb21	chr16	protein_coding	zinc finger and BTB domain containing 21
known_NIR_7584	chr16	97754293	97763614	-	97754293;97758100	97757958;97763614	ES	ENSMUST00000113734.9	known	0.75	3	1.0	3	1;1	n	0.14	1	6.0	1	10;2	n	0.31	4	9.0	4	9;9	y	0.29	1	2.5	1	3;2	n	0.11	1	8.0	1	10;6	n	0.22	2	7.0	2	7;7	y	0.33	1	2.0	1	2;2	n	0.14	2	12.5	2	18;7	y	0.31	2	4.5	2	8;1	n	0.29	1	2.5	1	3;2	n	0.29	1	2.5	1	5;0	n	0.00	0	3.5	0	5;2	n	ENSMUSG00000046962.17	Zbtb21	chr16	protein_coding	zinc finger and BTB domain containing 21
known_NIR_7585	chr16	97754293;97758094	97757958;97763614	-	97754293	97763614	cassetteExon	ENSMUST00000063605.15	known	0.25	1.0	3	1;1	3	n	0.83	5.0	1	10;0	1	n	0.56	5.0	4	9;1	4	n	0.60	1.5	1	3;0	1	n	0.83	5.0	1	10;0	1	n	0.67	4.0	2	7;1	2	n	0.50	1.0	1	2;0	1	n	0.83	10.0	2	18;2	2	y	0.67	4.0	2	8;0	2	n	0.60	1.5	1	3;0	1	n	0.71	2.5	1	5;0	1	n	1.00	2.5	0	5;0	0	n	ENSMUSG00000046962.17	Zbtb21	chr16	protein_coding	zinc finger and BTB domain containing 21
known_NIR_7586	chr16	97810204;97811368	97811319;97816866	+	97810204	97816866	cassetteExon	ENSMUST00000231936.2	known	0.56	9.0	7	11;7	7	y	0.00	0.0	3	0;0	3	n	0.56	5.0	4	9;1	4	n	0.87	6.5	1	9;4	1	n	0.31	4.0	9	4;4	9	y	0.60	3.0	2	4;2	2	n	0.50	7.0	7	10;4	7	y	0.33	2.5	5	5;0	5	n	0.48	6.5	7	7;6	7	y	0.45	7.5	9	10;5	9	y	0.50	4.0	4	5;3	4	y	0.38	5.5	9	9;2	9	y	ENSMUSG00000080717.11	B230307C23Rik	chr16	protein_coding	RIKEN cDNA B230307C23 gene
known_NIR_7587	chr16	97816919	97817042	+	97816919	97832694	A3SS	ENSMUST00000231936.2	known	0.55	6	5	6	5	y	0.67	6	3	6	3	n	0.27	3	8	3	8	y	0.75	9	3	9	3	y	0.57	8	6	8	6	y	1.00	3	0	3	0	n	0.67	4	2	4	2	n	0.60	3	2	3	2	n	0.69	9	4	9	4	y	0.50	5	5	5	5	y	0.67	4	2	4	2	n	0.57	8	6	8	6	y	ENSMUSG00000080717.11	B230307C23Rik	chr16	protein_coding	RIKEN cDNA B230307C23 gene
known_NIR_7588	chr16	97816919	97832443	+	97816919	97817042	3pMXE	ENSMUST00000232278.2	known	0.33	3	6	3	6	n	0.00	0	6	0	6	n	0.62	5	3	5	3	n	0.25	3	9	3	9	y	0.38	5	8	5	8	y	0.62	5	3	5	3	n	0.33	2	4	2	4	n	0.40	2	3	2	3	n	0.00	0	9	0	9	n	0.29	2	5	2	5	n	0.43	3	4	3	4	n	0.00	0	8	0	8	n	ENSMUSG00000080717.11	B230307C23Rik	chr16	protein_coding	RIKEN cDNA B230307C23 gene
known_NIR_7589	chr16	97816919	97832443	+	97816919	97832694	A3SS	ENSMUST00000231936.2	known	0.38	3	5	3	5	n	0.00	0	3	0	3	n	0.38	5	8	5	8	y	0.50	3	3	3	3	n	0.45	5	6	5	6	y	1.00	5	0	5	0	n	0.50	2	2	2	2	n	0.50	2	2	2	2	n	0.00	0	4	0	4	n	0.29	2	5	2	5	n	0.60	3	2	3	2	n	0.00	0	6	0	6	n	ENSMUSG00000080717.11	B230307C23Rik	chr16	protein_coding	RIKEN cDNA B230307C23 gene
known_NIR_7590	chr17	10433123	10435089	-	10432362	10435089	A3SS	ENSMUST00000233645.2	known	0.15	5	28	5	28	y	0.23	3	10	3	10	y	0.22	20	69	20	69	y	0.28	11	29	11	29	y	0.23	15	49	15	49	y	0.36	16	29	16	29	y	0.17	10	49	10	49	y	0.31	9	20	9	20	y	0.27	9	24	9	24	y	0.18	10	46	10	46	y	0.13	4	26	4	26	y	0.21	13	49	13	49	y	ENSMUSG00000062078.16	Qk	chr17	protein_coding	quaking, KH domain containing RNA binding
known_NIR_7591	chr17	10434403	10435089	-	10432362	10435089	A3SS	ENSMUST00000233645.2	known	0.03	1	28	1	28	n	0.00	0	10	0	10	n	0.00	0	69	0	69	n	0.09	3	29	3	29	y	0.02	1	49	1	49	n	0.00	0	29	0	29	n	0.04	2	49	2	49	y	0.17	4	20	4	20	y	0.14	4	24	4	24	y	0.08	4	46	4	46	y	0.04	1	26	1	26	n	0.00	0	49	0	49	n	ENSMUSG00000062078.16	Qk	chr17	protein_coding	quaking, KH domain containing RNA binding
known_NIR_7592	chr17	10434403	10435089	-	10433123	10435089	A3SS	ENSMUST00000097414.11	known	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.00	0	20	0	20	n	0.21	3	11	3	11	y	0.06	1	15	1	15	n	0.00	0	16	0	16	n	0.17	2	10	2	10	y	0.31	4	9	4	9	y	0.31	4	9	4	9	y	0.29	4	10	4	10	y	0.20	1	4	1	4	n	0.00	0	13	0	13	n	ENSMUSG00000062078.16	Qk	chr17	protein_coding	quaking, KH domain containing RNA binding
known_NIR_7593	chr17	12458957;12461692	12461537;12462387	-	12458957	12462387	cassetteExon	ENSMUST00000233755.2	known	0.03	0.5	18	1;0	18	n	0.05	1.0	18	2;0	18	n	0.06	1.5	24	0;3	24	n	0.08	2.5	30	2;3	30	y	0.15	4.5	25	6;3	25	y	0.22	2.0	7	0;4	7	n	0.13	3.5	24	1;6	24	n	0.17	2.5	12	3;2	12	y	0.18	3.0	14	4;2	14	y	0.03	1.0	31	0;2	31	n	0.15	3.5	20	4;3	20	y	0.12	4.0	28	3;5	28	y	ENSMUSG00000014426.10	Map3k4	chr17	protein_coding	mitogen-activated protein kinase kinase kinase 4
known_NIR_7594	chr17	12491107	12537385	-	12491107;12496998	12496808;12537385	ES	ENSMUST00000233755.2	known	0.00	0	3.0	0	4;2	n	0.00	0	3.5	0	5;2	n	0.00	0	3.5	0	5;2	n	0.09	1	10.0	1	12;8	n	0.00	0	11.0	0	17;5	n	0.00	0	7.5	0	8;7	n	0.00	0	9.0	0	11;7	n	0.00	0	8.0	0	13;3	n	0.00	0	9.5	0	11;8	n	0.00	0	10.5	0	13;8	n	0.00	0	8.5	0	9;8	n	0.15	2	11.0	2	13;9	y	ENSMUSG00000014426.10	Map3k4	chr17	protein_coding	mitogen-activated protein kinase kinase kinase 4
known_NIR_7595	chr17	12491107	12537385	-	12496998	12537385	3pMXE	ENSMUST00000233683.2	known	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.11	1	8	1	8	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.18	2	9	2	9	y	ENSMUSG00000014426.10	Map3k4	chr17	protein_coding	mitogen-activated protein kinase kinase kinase 4
known_NIR_7596	chr17	12871371	12871570	-	12871371	12875825	A5SS	ENSMUST00000233691.2	known	0.00	1	974	1	974	n	0.00	0	1200	0	1200	n	0.00	0	429	0	429	n	0.00	0	1044	0	1044	n	0.00	0	898	0	898	n	0.00	0	303	0	303	n	0.00	0	1301	0	1301	n	0.00	0	312	0	312	n	0.00	0	1080	0	1080	n	0.00	4	1832	4	1832	y	0.00	4	1485	4	1485	y	0.00	1	998	1	998	n	ENSMUSG00000023829.10	Slc22a1	chr17	protein_coding	solute carrier family 22 (organic cation transporter), member 1
known_NIR_7597	chr17	12885666;12886217	12886114;12894133	-	12885666	12894133	cassetteExon	ENSMUST00000233691.2	known	0.99	542.0	4	530;554	4	y	1.00	549.0	2	585;513	2	y	1.00	293.0	0	319;267	0	n	1.00	704.0	3	701;707	3	y	1.00	543.0	2	580;506	2	y	0.99	179.0	1	180;178	1	n	1.00	682.0	2	734;630	2	y	0.98	185.5	3	213;158	3	y	1.00	659.0	3	642;676	3	y	1.00	1094.0	5	1128;1060	5	y	0.99	659.0	5	696;622	5	y	1.00	603.5	2	597;610	2	y	ENSMUSG00000023829.10	Slc22a1	chr17	protein_coding	solute carrier family 22 (organic cation transporter), member 1
known_NIR_7598	chr17	13107856	13108870	-	13107856	13108963	A5SS	ENSMUST00000233474.2	known	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.08	1	12	1	12	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.25	3	9	3	9	y	0.00	0	9	0	9	n	0.00	0	8	0	8	n	ENSMUSG00000073460.6	Pnldc1	chr17	protein_coding	poly(A)-specific ribonuclease (PARN)-like domain containing 1
known_NIR_7599	chr17	13109315	13109608	-	13109341	13109608	A3SS	ENSMUST00000233474.2	known	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.12	2	14	2	14	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	ENSMUSG00000073460.6	Pnldc1	chr17	protein_coding	poly(A)-specific ribonuclease (PARN)-like domain containing 1
known_NIR_7600	chr17	13132888	13134444	-	13132888	13134525	A5SS	ENSMUST00000079121.4	known	0.01	2	282	2	282	y	0.00	0	239	0	239	n	0.00	0	250	0	250	n	0.00	0	238	0	238	n	0.00	1	256	1	256	n	0.01	2	150	2	150	y	0.01	2	248	2	248	y	0.02	2	123	2	123	y	0.01	3	235	3	235	y	0.00	1	281	1	281	n	0.00	0	251	0	251	n	0.01	2	279	2	279	y	ENSMUSG00000057388.10	Mrpl18	chr17	protein_coding	mitochondrial ribosomal protein L18
known_NIR_7601	chr17	13134711	13134791	-	13134711	13134834	A5SS	ENSMUST00000079121.4	known	0.00	0	138	0	138	n	0.03	4	127	4	127	y	0.01	1	102	1	102	n	0.04	7	151	7	151	y	0.00	0	188	0	188	n	0.00	0	74	0	74	n	0.01	2	188	2	188	y	0.02	1	60	1	60	n	0.00	0	125	0	125	n	0.00	0	239	0	239	n	0.02	3	147	3	147	y	0.03	5	150	5	150	y	ENSMUSG00000057388.10	Mrpl18	chr17	protein_coding	mitochondrial ribosomal protein L18
known_NIR_7602	chr17	13135516	13136930	+	13136770	13136930	A5SS&ES	ENSMUST00000147724.8	known	0.04	7	187	7	187	y	0.04	6	154	6	154	y	0.03	7	197	7	197	y	0.03	9	263	9	263	y	0.04	10	221	10	221	y	0.08	7	84	7	84	y	0.05	13	227	13	227	y	0.04	5	109	5	109	y	0.01	1	158	1	158	n	0.01	2	263	2	263	y	0.02	5	220	5	220	y	0.01	3	288	3	288	y	ENSMUSG00000068039.14	Tcp1	chr17	protein_coding	t-complex protein 1
known_NIR_7603	chr17	13135516;13136770	13136685;13136930	+	13135516	13136930	cassetteExon	ENSMUST00000089024.13	known	0.96	176.5	7	166;187	7	y	0.96	151.0	6	148;154	6	y	0.97	197.0	7	197;197	7	y	0.97	266.5	9	270;263	9	y	0.96	225.0	10	229;221	10	y	0.93	89.0	7	94;84	7	y	0.95	241.5	13	256;227	13	y	0.96	127.5	5	146;109	5	y	0.99	166.0	1	174;158	1	n	0.99	278.0	2	293;263	2	y	0.98	205.5	5	191;220	5	y	0.99	278.5	3	269;288	3	y	ENSMUSG00000068039.14	Tcp1	chr17	protein_coding	t-complex protein 1
known_NIR_7604	chr17	13166366	13171139	-	13166366;13167544	13167401;13171139	ES	ENSMUST00000007005.14	known	0.00	0	27.0	0	44;10	n	0.11	3	25.5	3	44;7	y	0.00	0	35.5	0	54;17	n	0.00	0	32.5	0	53;12	n	0.08	5	55.0	5	89;21	y	0.00	0	31.5	0	50;13	n	0.02	1	44.0	1	71;17	n	0.00	0	26.5	0	41;12	n	0.00	0	26.0	0	44;8	n	0.10	5	44.5	5	76;13	y	0.04	2	51.0	2	76;26	y	0.04	2	51.0	2	84;18	y	ENSMUSG00000023832.15	Acat2	chr17	protein_coding	acetyl-Coenzyme A acetyltransferase 2
known_NIR_7605	chr17	13204840	13210964	-	13204840	13211196	A5SS	ENSMUST00000159551.8	known	0.64	28	16	28	16	y	0.57	21	16	21	16	y	0.52	36	33	36	33	y	0.59	27	19	27	19	y	0.66	45	23	45	23	y	0.64	38	21	38	21	y	0.60	27	18	27	18	y	0.48	21	23	21	23	y	0.60	18	12	18	12	y	0.55	28	23	28	23	y	0.65	28	15	28	15	y	0.49	20	21	20	21	y	ENSMUSG00000060475.14	Wtap	chr17	protein_coding	Wilms tumour 1-associating protein
known_NIR_7606	chr17	13232499	13253767	+	13232499	13233913	3pMXE	ENSMUST00000007012.6	known	0.00	0	722	0	722	n	0.00	0	863	0	863	n	0.00	10	3480	10	3480	y	0.00	0	843	0	843	n	0.00	0	1005	0	1005	n	0.00	0	2282	0	2282	n	0.00	0	1292	0	1292	n	0.00	0	1430	0	1430	n	0.00	0	676	0	676	n	0.00	0	1060	0	1060	n	0.00	0	914	0	914	n	0.00	0	913	0	913	n	ENSMUSG00000006818.6	Sod2	chr17	protein_coding	superoxide dismutase 2, mitochondrial
known_NIR_7607	chr17	14024396	14027542	+	14024396	14027539	A3SS	ENSMUST00000139347.8	known	0.70	16	7	16	7	y	0.43	6	8	6	8	y	0.35	36	66	36	66	y	0.50	14	14	14	14	y	0.69	35	16	35	16	y	0.37	14	24	14	24	y	0.44	14	18	14	18	y	0.59	30	21	30	21	y	0.38	5	8	5	8	y	0.47	9	10	9	10	y	0.33	1	2	1	2	n	0.41	14	20	14	20	y	ENSMUSG00000068036.17	Afdn	chr17	protein_coding	afadin, adherens junction formation factor
known_NIR_7608	chr17	14027654	14029194	+	14027654	14029197	A3SS	ENSMUST00000139347.8	known	0.53	8	7	8	7	y	1.00	6	0	6	0	n	0.69	36	16	36	16	y	0.65	11	6	11	6	y	0.61	17	11	17	11	y	0.43	9	12	9	12	y	0.53	8	7	8	7	y	0.66	21	11	21	11	y	0.90	9	1	9	1	n	0.78	14	4	14	4	y	0.40	2	3	2	3	n	0.44	7	9	7	9	y	ENSMUSG00000068036.17	Afdn	chr17	protein_coding	afadin, adherens junction formation factor
known_NIR_7609	chr17	14066901;14068637	14068617;14069370	+	14066901	14069370	cassetteExon	ENSMUST00000170827.9	known	0.20	3.0	12	2;4	12	y	0.11	1.5	12	2;1	12	n	0.19	16.0	70	15;17	70	y	0.12	5.0	37	4;6	37	y	0.18	9.5	42	9;10	42	y	0.16	5.0	27	6;4	27	y	0.30	9.0	21	8;10	21	y	0.14	7.5	48	7;8	48	y	0.00	0.0	15	0;0	15	n	0.11	4.0	33	4;4	33	y	0.20	2.0	8	2;2	8	y	0.08	2.5	27	2;3	27	y	ENSMUSG00000068036.17	Afdn	chr17	protein_coding	afadin, adherens junction formation factor
known_NIR_7610	chr17	14087979	14101547	+	14082117	14101547	A5SS	ENSMUST00000170827.9	known	0.04	1	25	1	25	n	0.00	0	26	0	26	n	0.00	0	108	0	108	n	0.07	3	43	3	43	y	0.00	0	82	0	82	n	0.00	0	55	0	55	n	0.07	3	37	3	37	y	0.02	1	44	1	44	n	0.26	7	20	7	20	y	0.10	4	38	4	38	y	0.10	3	27	3	27	y	0.00	0	45	0	45	n	ENSMUSG00000068036.17	Afdn	chr17	protein_coding	afadin, adherens junction formation factor
known_NIR_7611	chr17	14109239;14111260	14111225;14116350	+	14109239	14116350	cassetteExon	ENSMUST00000170827.9	known	0.03	2.5	78	2;3	78	y	0.01	1.0	71	1;1	71	n	0.02	5.0	225	2;8	225	y	0.02	2.5	122	2;3	122	y	0.00	0.0	158	0;0	158	n	0.00	0.5	121	0;1	121	n	0.01	1.5	101	2;1	101	n	0.01	1.0	100	1;1	100	n	0.01	0.5	57	0;1	57	n	0.01	1.0	81	0;2	81	n	0.00	0.0	50	0;0	50	n	0.01	1.0	108	1;1	108	n	ENSMUSG00000068036.17	Afdn	chr17	protein_coding	afadin, adherens junction formation factor
known_NIR_7612	chr17	14119720	14122792	+	14119489	14122792	A5SS	ENSMUST00000170827.9	known	0.52	34	31	34	31	y	0.36	24	42	24	42	y	0.32	54	113	54	113	y	0.55	52	43	52	43	y	0.34	53	102	53	102	y	0.43	31	41	31	41	y	0.37	35	60	35	60	y	0.37	28	47	28	47	y	0.50	23	23	23	23	y	0.39	26	40	26	40	y	0.38	20	33	20	33	y	0.52	41	38	41	38	y	ENSMUSG00000068036.17	Afdn	chr17	protein_coding	afadin, adherens junction formation factor
known_NIR_7613	chr17	14419540	14424438	-	14419540	14423776	5pMXE	ENSMUST00000053218.7	known	0.00	0	19	0	19	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	20	0	20	n	0.04	1	25	1	25	n	0.11	2	16	2	16	y	0.00	0	17	0	17	n	0.00	0	22	0	22	n	0.00	0	19	0	19	n	0.00	0	24	0	24	n	0.00	0	15	0	15	n	0.00	0	29	0	29	n	ENSMUSG00000048826.8	Dact2	chr17	protein_coding	dishevelled-binding antagonist of beta-catenin 2
known_NIR_7614	chr17	15163581	15163764	+	15163581	15163829	A3SS	ENSMUST00000052691.9	known	0.12	3	23	3	23	y	0.14	3	19	3	19	y	0.19	6	26	6	26	y	0.11	4	32	4	32	y	0.17	9	44	9	44	y	0.14	4	24	4	24	y	0.15	6	34	6	34	y	0.04	1	25	1	25	n	0.21	8	30	8	30	y	0.15	7	40	7	40	y	0.08	2	23	2	23	y	0.16	8	43	8	43	y	ENSMUSG00000050088.10	1600012H06Rik	chr17	protein_coding	RIKEN cDNA 1600012H06 gene
known_NIR_7615	chr17	15163581	15163834	+	15163581	15163764	A3SS	ENSMUST00000164837.3	known	0.75	9	3	9	3	y	0.50	3	3	3	3	n	0.25	2	6	2	6	n	0.43	3	4	3	4	n	0.47	8	9	8	9	y	0.33	2	4	2	4	n	0.45	5	6	5	6	y	0.86	6	1	6	1	n	0.20	2	8	2	8	y	0.00	0	7	0	7	n	0.50	2	2	2	2	n	0.53	9	8	9	8	y	ENSMUSG00000050088.10	1600012H06Rik	chr17	protein_coding	RIKEN cDNA 1600012H06 gene
known_NIR_7616	chr17	15163581	15163834	+	15163581	15163829	A3SS	ENSMUST00000052691.9	known	0.28	9	23	9	23	y	0.14	3	19	3	19	y	0.07	2	26	2	26	y	0.09	3	32	3	32	y	0.15	8	44	8	44	y	0.08	2	24	2	24	y	0.13	5	34	5	34	y	0.19	6	25	6	25	y	0.06	2	30	2	30	y	0.00	0	40	0	40	n	0.08	2	23	2	23	y	0.17	9	43	9	43	y	ENSMUSG00000050088.10	1600012H06Rik	chr17	protein_coding	RIKEN cDNA 1600012H06 gene
known_NIR_7617	chr17	15279731	15281331	+	15279731;15280246	15280028;15281331	ES	ENSMUST00000097393.11	known	0.10	2	19.0	2	20;18	y	0.29	6	15.0	6	10;20	y	0.46	14	16.5	14	11;22	y	0.10	3	27.0	3	34;20	y	0.31	8	17.5	8	14;21	y	0.29	4	10.0	4	9;11	y	0.21	5	19.0	5	20;18	y	0.20	3	12.0	3	10;14	y	0.30	7	16.5	7	15;18	y	0.14	4	24.5	4	24;25	y	0.19	5	22.0	5	22;22	y	0.28	9	23.0	9	24;22	y	ENSMUSG00000036552.20	Ermard	chr17	protein_coding	ER membrane associated RNA degradation
known_NIR_7618	chr17	15281444	15283842	+	15281444	15283864	A3SS	ENSMUST00000097393.11	known	0.74	26	9	26	9	y	0.68	15	7	15	7	y	0.72	26	10	26	10	y	0.59	17	12	17	12	y	0.66	21	11	21	11	y	0.73	16	6	16	6	y	0.65	24	13	24	13	y	0.52	11	10	11	10	y	0.81	21	5	21	5	y	0.81	17	4	17	4	y	0.58	14	10	14	10	y	0.68	17	8	17	8	y	ENSMUSG00000036552.20	Ermard	chr17	protein_coding	ER membrane associated RNA degradation
known_NIR_7619	chr17	15281444	15284247	+	15281444	15283842	A3SS	ENSMUST00000228803.2	known	0.00	0	26	0	26	n	0.12	2	15	2	15	y	0.07	2	26	2	26	y	0.15	3	17	3	17	y	0.00	0	21	0	21	n	0.06	1	16	1	16	n	0.04	1	24	1	24	n	0.00	0	11	0	11	n	0.00	0	21	0	21	n	0.00	0	17	0	17	n	0.00	0	14	0	14	n	0.00	0	17	0	17	n	ENSMUSG00000036552.20	Ermard	chr17	protein_coding	ER membrane associated RNA degradation
known_NIR_7620	chr17	15281444	15284247	+	15281444	15283864	3pMXE	ENSMUST00000097393.11	known	0.00	0	9	0	9	n	0.22	2	7	2	7	n	0.17	2	10	2	10	y	0.20	3	12	3	12	y	0.00	0	11	0	11	n	0.14	1	6	1	6	n	0.07	1	13	1	13	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	ENSMUSG00000036552.20	Ermard	chr17	protein_coding	ER membrane associated RNA degradation
known_NIR_7621	chr17	15281444	15286088	+	15281444	15283842	3pMXE	ENSMUST00000228803.2	known	0.16	5	26	5	26	y	0.06	1	15	1	15	n	0.00	0	26	0	26	n	0.00	0	17	0	17	n	0.00	0	21	0	21	n	0.06	1	16	1	16	n	0.14	4	24	4	24	y	0.00	0	11	0	11	n	0.12	3	21	3	21	y	0.00	0	17	0	17	n	0.00	0	14	0	14	n	0.00	0	17	0	17	n	ENSMUSG00000036552.20	Ermard	chr17	protein_coding	ER membrane associated RNA degradation
known_NIR_7622	chr17	15281444	15286088	+	15281444	15283864	3pMXE	ENSMUST00000097393.11	known	0.36	5	9	5	9	y	0.12	1	7	1	7	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.14	1	6	1	6	n	0.24	4	13	4	13	y	0.00	0	10	0	10	n	0.38	3	5	3	5	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	ENSMUSG00000036552.20	Ermard	chr17	protein_coding	ER membrane associated RNA degradation
known_NIR_7623	chr17	15624659	15626017	+	15623391	15626017	A5SS	ENSMUST00000055352.8	known	0.23	7	23	7	23	y	0.23	5	17	5	17	y	0.14	4	24	4	24	y	0.12	5	38	5	38	y	0.19	4	17	4	17	y	0.15	2	11	2	11	y	0.07	2	28	2	28	y	0.19	3	13	3	13	y	0.19	3	13	3	13	y	0.26	9	25	9	25	y	0.00	0	28	0	28	n	0.06	1	16	1	16	n	ENSMUSG00000014763.9	Fam120b	chr17	protein_coding	family with sequence similarity 120, member B
known_NIR_7624	chr17	15652103	15655035	-	15652103	15655125	A5SS	ENSMUST00000231577.2	known	0.97	31	1	31	1	n	0.92	22	2	22	2	y	1.00	4	0	4	0	n	0.77	37	11	37	11	y	0.88	35	5	35	5	y	0.77	10	3	10	3	y	0.96	26	1	26	1	n	1.00	15	0	15	0	n	0.83	34	7	34	7	y	0.89	49	6	49	6	y	0.90	27	3	27	3	y	0.88	38	5	38	5	y	ENSMUSG00000116718.2	Gm49668	chr17	lncRNA	predicted gene, 49668
known_NIR_7625	chr17	15714785	15719495	-	15714785	15718415	5pMXE	ENSMUST00000014913.11	known	0.00	0	502	0	502	n	0.00	0	519	0	519	n	0.00	0	589	0	589	n	0.00	1	649	1	649	n	0.00	0	739	0	739	n	0.00	0	406	0	406	n	0.00	0	700	0	700	n	0.00	0	366	0	366	n	0.00	2	510	2	510	y	0.00	2	774	2	774	y	0.00	0	589	0	589	n	0.00	0	679	0	679	n	ENSMUSG00000014769.11	Psmb1	chr17	protein_coding	proteasome (prosome, macropain) subunit, beta type 1
known_NIR_7626	chr17	15720286	15723224	+	15720286	15723227	A3SS	ENSMUST00000162505.8	known	0.00	0	10	0	10	n	0.12	2	14	2	14	y	0.00	0	21	0	21	n	0.00	0	19	0	19	n	0.00	0	31	0	31	n	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.00	0	18	0	18	n	0.00	0	18	0	18	n	0.00	0	15	0	15	n	ENSMUSG00000014767.18	Tbp	chr17	protein_coding	TATA box binding protein
known_NIR_7627	chr17	15720286	15723227	+	15720286	15721416	A3SS&ES	ENSMUST00000159197.8	known	0.83	10	2	10	2	y	1.00	14	0	14	0	n	0.78	21	6	21	6	y	1.00	19	0	19	0	n	0.86	31	5	31	5	y	0.69	9	4	9	4	y	0.94	17	1	17	1	n	0.88	14	2	14	2	y	0.89	16	2	16	2	y	0.86	18	3	18	3	y	0.95	18	1	18	1	n	0.83	15	3	15	3	y	ENSMUSG00000014767.18	Tbp	chr17	protein_coding	TATA box binding protein
known_NIR_7628	chr17	15720286	15723227	+	15720286;15721464	15721416;15723227	ES	ENSMUST00000014911.12	known	0.91	10	1.0	10	2;0	n	1.00	14	0.0	14	0;0	n	0.81	21	5.0	21	6;4	y	1.00	19	0.0	19	0;0	n	0.90	31	3.5	31	5;2	y	0.82	9	2.0	9	4;0	n	0.85	17	3.0	17	1;5	n	0.93	14	1.0	14	2;0	n	0.91	16	1.5	16	2;1	n	0.88	18	2.5	18	3;2	y	0.92	18	1.5	18	1;2	n	0.81	15	3.5	15	3;4	y	ENSMUSG00000014767.18	Tbp	chr17	protein_coding	TATA box binding protein
known_NIR_7629	chr17	15720286	15723227	+	15721619	15723227	A5SS&ES	ENSMUST00000117593.8	known	1.00	10	0	10	0	n	0.74	14	5	14	5	y	0.72	21	8	21	8	y	0.90	19	2	19	2	y	0.76	31	10	31	10	y	0.50	9	9	9	9	y	0.71	17	7	17	7	y	0.82	14	3	14	3	y	0.76	16	5	16	5	y	0.86	18	3	18	3	y	0.95	18	1	18	1	n	0.88	15	2	15	2	y	ENSMUSG00000014767.18	Tbp	chr17	protein_coding	TATA box binding protein
known_NIR_7630	chr17	15720286;15721619	15721416;15723227	+	15720286	15723227	cassetteExon	ENSMUST00000162505.8	known	0.09	1.0	10	2;0	10	n	0.15	2.5	14	0;5	14	n	0.25	7.0	21	6;8	21	y	0.05	1.0	19	0;2	19	n	0.19	7.5	31	5;10	31	y	0.42	6.5	9	4;9	9	y	0.19	4.0	17	1;7	17	n	0.15	2.5	14	2;3	14	y	0.18	3.5	16	2;5	16	y	0.14	3.0	18	3;3	18	y	0.05	1.0	18	1;1	18	n	0.14	2.5	15	3;2	15	y	ENSMUSG00000014767.18	Tbp	chr17	protein_coding	TATA box binding protein
known_NIR_7631	chr17	15720286;15721619	15721574;15723227	+	15720286	15723227	cassetteExon	ENSMUST00000162505.8	known	0.00	0.0	10	0;0	10	n	0.20	3.5	14	2;5	14	y	0.16	4.0	21	0;8	21	n	0.05	1.0	19	0;2	19	n	0.15	5.5	31	1;10	31	n	0.38	5.5	9	2;9	9	y	0.17	3.5	17	0;7	17	n	0.10	1.5	14	0;3	14	n	0.14	2.5	16	0;5	16	n	0.08	1.5	18	0;3	18	n	0.03	0.5	18	0;1	18	n	0.06	1.0	15	0;2	15	n	ENSMUSG00000014767.18	Tbp	chr17	protein_coding	TATA box binding protein
known_NIR_7632	chr17	15721464	15723227	+	15721619	15723227	A5SS	ENSMUST00000155051.8	known	-	-	-	-	-	-	0.00	0	5	0	5	n	0.33	4	8	4	8	y	0.00	0	2	0	2	n	0.17	2	10	2	10	y	0.00	0	9	0	9	n	0.42	5	7	5	7	y	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.40	2	3	2	3	n	0.67	2	1	2	1	n	0.67	4	2	4	2	n	ENSMUSG00000014767.18	Tbp	chr17	protein_coding	TATA box binding protein
known_NIR_7633	chr17	15721464;15721619	15721574;15723227	+	15721464	15723227	cassetteExon	ENSMUST00000014911.12	known	-	-	-	-	-	-	1.00	2.5	0	0;5	0	n	0.56	5.0	4	2;8	4	y	1.00	1.0	0	0;2	0	n	0.75	6.0	2	2;10	2	y	1.00	6.0	0	3;9	0	n	0.44	4.0	5	1;7	5	n	1.00	1.5	0	0;3	0	n	0.78	3.5	1	2;5	1	n	0.43	1.5	2	0;3	2	n	0.20	0.5	2	0;1	2	n	0.27	1.5	4	1;2	4	n	ENSMUSG00000014767.18	Tbp	chr17	protein_coding	TATA box binding protein
known_NIR_7634	chr17	15724909;15726672	15726634;15727605	+	15724909	15727605	cassetteExon	ENSMUST00000014911.12	known	0.00	0.0	23	0;0	23	n	0.00	0.0	21	0;0	21	n	0.00	0.0	44	0;0	44	n	0.00	0.0	33	0;0	33	n	0.00	0.0	37	0;0	37	n	0.00	0.0	33	0;0	33	n	0.07	3.0	42	3;3	42	y	0.00	0.0	22	0;0	22	n	0.00	0.0	20	0;0	20	n	0.03	1.5	49	1;2	49	n	0.00	0.0	31	0;0	31	n	0.01	0.5	37	1;0	37	n	ENSMUSG00000014767.18	Tbp	chr17	protein_coding	TATA box binding protein
known_NIR_7635	chr17	15733883	15735878	+	15733883	15734492	3pMXE	ENSMUST00000119879.9	known	0.12	3	22	3	22	y	0.29	6	15	6	15	y	0.12	4	30	4	30	y	0.24	4	13	4	13	y	0.24	12	37	12	37	y	0.10	3	26	3	26	y	0.06	2	31	2	31	y	0.16	3	16	3	16	y	0.21	4	15	4	15	y	0.30	8	19	8	19	y	0.14	3	19	3	19	y	0.26	9	25	9	25	y	ENSMUSG00000014767.18	Tbp	chr17	protein_coding	TATA box binding protein
known_NIR_7636	chr17	15733883	15735878	+	15733883;15734659	15734492;15735878	ES	ENSMUST00000014911.12	known	0.15	3	17.5	3	22;13	y	0.24	6	19.0	6	15;23	y	0.12	4	28.5	4	30;27	y	0.21	4	15.0	4	13;17	y	0.30	12	27.5	12	37;18	y	0.12	3	21.0	3	26;16	y	0.08	2	24.5	2	31;18	y	0.17	3	14.5	3	16;13	y	0.21	4	15.5	4	15;16	y	0.33	8	16.5	8	19;14	y	0.16	3	15.5	3	19;12	y	0.31	9	20.5	9	25;16	y	ENSMUSG00000014767.18	Tbp	chr17	protein_coding	TATA box binding protein
known_NIR_7637	chr17	15742291	15743065	-	15740626	15743065	A3SS	ENSMUST00000154293.8	known	1.00	67	0	67	0	n	1.00	65	0	65	0	n	0.96	50	2	50	2	y	1.00	59	0	59	0	n	1.00	58	0	58	0	n	1.00	28	0	28	0	n	1.00	88	0	88	0	n	0.96	24	1	24	1	n	1.00	63	0	63	0	n	1.00	83	0	83	0	n	0.99	79	1	79	1	n	1.00	77	0	77	0	n	ENSMUSG00000014771.14	Pdcd2	chr17	protein_coding	programmed cell death 2
known_NIR_7638	chr17	15745662	15746803	-	15745662	15746635	A5SS	ENSMUST00000154293.8	known	0.03	2	60	2	60	y	0.00	0	69	0	69	n	0.00	0	60	0	60	n	0.00	0	89	0	89	n	0.00	0	61	0	61	n	0.00	0	32	0	32	n	0.00	0	62	0	62	n	0.00	0	18	0	18	n	0.06	3	49	3	49	y	0.00	0	74	0	74	n	0.00	0	70	0	70	n	0.00	0	74	0	74	n	ENSMUSG00000014771.14	Pdcd2	chr17	protein_coding	programmed cell death 2
known_NIR_7639	chr17	15746874	15747158	-	15746874	15747253	A5SS	ENSMUST00000154293.8	known	0.05	2	42	2	42	y	0.11	5	41	5	41	y	0.05	2	36	2	36	y	0.02	1	52	1	52	n	0.04	2	49	2	49	y	0.06	1	17	1	17	n	0.02	1	41	1	41	n	0.00	0	17	0	17	n	0.17	7	35	7	35	y	0.02	1	51	1	51	n	0.00	0	58	0	58	n	0.06	4	60	4	60	y	ENSMUSG00000014771.14	Pdcd2	chr17	protein_coding	programmed cell death 2
known_NIR_7640	chr17	15978994	15980568	+	15978994	15980590	A3SS	ENSMUST00000024627.14	known	0.00	0	25	0	25	n	0.00	0	16	0	16	n	0.00	0	79	0	79	n	0.00	0	35	0	35	n	0.00	0	47	0	47	n	0.00	0	15	0	15	n	0.00	0	41	0	41	n	0.00	0	19	0	19	n	0.00	0	27	0	27	n	0.00	0	34	0	34	n	0.00	0	25	0	25	n	0.04	2	43	2	43	y	ENSMUSG00000023852.15	Chd1	chr17	protein_coding	chromodomain helicase DNA binding protein 1
known_NIR_7641	chr17	17171970;17191288	17191162;17191433	+	17171970	17191433	cassetteExon	ENSMUST00000190415.2	known	0.50	2.0	2	0;4	2	n	1.00	1.5	0	0;3	0	n	1.00	1.5	0	0;3	0	n	0.75	3.0	1	5;1	1	n	0.75	3.0	1	3;3	1	n	0.33	0.5	1	0;1	1	n	0.60	4.5	3	5;4	3	y	1.00	1.5	0	0;3	0	n	0.60	1.5	1	0;3	1	n	0.71	2.5	1	1;4	1	n	0.71	2.5	1	0;5	1	n	0.56	2.5	2	3;2	2	n	ENSMUSG00000060149.8	BC002059	chr17	lncRNA	cDNA sequence BC002059
known_NIR_7642	chr17	21185628	21185717	+	21185592	21185717	A5SS	ENSMUST00000007708.14	known	0.01	2	228	2	228	y	0.00	0	208	0	208	n	0.00	1	218	1	218	n	0.01	2	132	2	132	y	0.01	2	217	2	217	y	0.00	0	110	0	110	n	0.00	0	247	0	247	n	0.00	0	95	0	95	n	0.00	0	143	0	143	n	0.01	2	206	2	206	y	0.00	0	216	0	216	n	0.01	1	167	1	167	n	ENSMUSG00000007564.16	Ppp2r1a	chr17	protein_coding	protein phosphatase 2, regulatory subunit A, alpha
known_NIR_7643	chr17	21232034	21240334	+	21232039	21240334	A5SS	ENSMUST00000232473.2	known	0.86	12	2	12	2	y	1.00	5	0	5	0	n	1.00	7	0	7	0	n	1.00	2	0	2	0	n	0.85	11	2	11	2	y	1.00	10	0	10	0	n	1.00	13	0	13	0	n	0.88	7	1	7	1	n	1.00	10	0	10	0	n	1.00	14	0	14	0	n	1.00	7	0	7	0	n	1.00	7	0	7	0	n	ENSMUSG00000067942.7	Zfp160	chr17	protein_coding	zinc finger protein 160
known_NIR_7644	chr17	21962938	21988274	+	21962938	21964028	3pMXE	ENSMUST00000182827.8	known	0.10	1	9	1	9	n	0.40	2	3	2	3	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.64	7	4	7	4	y	0.00	0	1	0	1	n	0.12	1	7	1	7	n	0.00	0	7	0	7	n	0.33	1	2	1	2	n	0.00	0	9	0	9	n	0.17	1	5	1	5	n	0.07	1	13	1	13	n	ENSMUSG00000061544.14	Zfp229	chr17	protein_coding	zinc finger protein 229
known_NIR_7645	chr17	22580688	22591017	+	22580688	22590972	A3SS	ENSMUST00000088765.9	known	0.50	2	2	2	2	n	-	-	-	-	-	-	0.67	2	1	2	1	n	0.25	1	3	1	3	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	4	0	4	n	1.00	3	0	3	0	n	0.30	3	7	3	7	y	1.00	2	0	2	0	n	0.00	0	3	0	3	n	ENSMUSG00000044501.18	Zfp758	chr17	protein_coding	zinc finger protein 758
known_NIR_7646	chr17	22580688	22592624	+	22580688;22591069	22590972;22592624	ES	ENSMUST00000088765.9	known	0.00	0	4.0	0	2;6	n	0.50	2	2.0	2	0;4	n	0.55	3	2.5	3	1;4	n	0.00	0	3.0	0	3;3	n	0.62	5	3.0	5	2;4	y	0.55	3	2.5	3	2;3	n	0.00	0	3.5	0	4;3	n	0.25	1	3.0	1	4;2	n	0.75	3	1.0	3	0;2	n	0.15	1	5.5	1	7;4	n	0.00	0	1.5	0	0;3	n	0.67	5	2.5	5	3;2	y	ENSMUSG00000044501.18	Zfp758	chr17	protein_coding	zinc finger protein 758
known_NIR_7647	chr17	22647546;22663272	22663149;22665778	+	22647546	22665778	cassetteExon	ENSMUST00000141831.8	known	1.00	17.0	0	15;19	0	n	1.00	10.5	0	7;14	0	n	1.00	12.0	0	14;10	0	n	0.78	17.5	5	22;13	5	y	0.78	28.5	8	28;29	8	y	1.00	8.5	0	5;12	0	n	0.95	17.5	1	16;19	1	n	1.00	6.0	0	4;8	0	n	0.89	16.0	2	20;12	2	y	1.00	22.0	0	24;20	0	n	0.73	5.5	2	5;6	2	y	0.96	23.0	1	32;14	1	n	ENSMUSG00000071266.14	Zfp946	chr17	protein_coding	zinc finger protein 946
known_NIR_7648	chr17	22665874	22670060	+	22665874	22670078	A3SS	ENSMUST00000120222.8	known	0.14	3	18	3	18	y	0.23	7	23	7	23	y	0.11	2	16	2	16	y	0.25	10	30	10	30	y	0.05	3	52	3	52	y	0.08	1	11	1	11	n	0.06	2	33	2	33	y	0.47	7	8	7	8	y	0.00	0	24	0	24	n	0.03	1	36	1	36	n	0.00	0	17	0	17	n	0.15	4	23	4	23	y	ENSMUSG00000071266.14	Zfp946	chr17	protein_coding	zinc finger protein 946
known_NIR_7649	chr17	23080535	23084221	-	23080535;23080826	23080706;23084221	ES	ENSMUST00000160457.10	known	0.77	12	3.5	12	3;4	y	0.65	13	7.0	13	10;4	y	0.64	7	4.0	7	4;4	y	0.62	8	5.0	8	8;2	y	0.68	26	12.0	26	14;10	y	0.69	9	4.0	9	2;6	y	0.70	15	6.5	15	8;5	y	0.63	6	3.5	6	4;3	y	0.60	12	8.0	12	13;3	y	0.74	24	8.5	24	11;6	y	0.81	19	4.5	19	4;5	y	0.63	25	14.5	25	14;15	y	ENSMUSG00000059142.17	Zfp945	chr17	protein_coding	zinc finger protein 945
known_NIR_7650	chr17	23410482	23410651	-	23410409	23410651	A3SS	ENSMUST00000037057.14	known	0.00	0	2	0	2	n	-	-	-	-	-	-	0.30	3	7	3	7	y	0.75	3	1	3	1	n	0.00	0	5	0	5	n	0.20	1	4	1	4	n	1.00	4	0	4	0	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	2	2	2	2	n	ENSMUSG00000002617.15	Zfp40	chr17	protein_coding	zinc finger protein 40
known_NIR_7651	chr17	23893042	23893521	+	23893042	23893509	A3SS	ENSMUST00000180140.8	known	0.00	0	231	0	231	n	0.00	0	238	0	238	n	0.00	0	48	0	48	n	0.00	0	193	0	193	n	0.00	0	230	0	230	n	0.00	0	83	0	83	n	0.05	15	284	15	284	y	0.11	10	79	10	79	y	0.00	0	167	0	167	n	0.00	0	335	0	335	n	0.08	24	263	24	263	y	0.00	0	250	0	250	n	ENSMUSG00000023904.11	Hcfc1r1	chr17	protein_coding	host cell factor C1 regulator 1 (XPO1-dependent)
known_NIR_7652	chr17	23982292;23989306	23989209;23990389	-	23982292	23990389	cassetteExon	ENSMUST00000086325.13	known	0.74	11.5	4	10;13	4	y	0.43	6.0	8	10;2	8	y	0.36	5.0	9	6;4	9	y	0.71	15.0	6	13;17	6	y	0.40	10.0	15	11;9	15	y	0.51	9.5	9	11;8	9	y	0.47	15.0	17	15;15	17	y	0.40	4.0	6	6;2	6	y	0.44	4.0	5	3;5	5	y	0.42	9.5	13	14;5	13	y	0.56	9.0	7	11;7	7	y	0.35	7.5	14	9;6	14	y	ENSMUSG00000040097.17	Flywch1	chr17	protein_coding	FLYWCH-type zinc finger 1
known_NIR_7653	chr17	24022372	24025906	+	24011485	24025906	A5SS	ENSMUST00000186961.7	known	1.00	44	0	44	0	n	0.94	34	2	34	2	y	1.00	52	0	52	0	n	0.97	73	2	73	2	y	0.96	90	4	90	4	y	1.00	29	0	29	0	n	1.00	61	0	61	0	n	1.00	57	0	57	0	n	1.00	42	0	42	0	n	1.00	55	0	55	0	n	1.00	27	0	27	0	n	0.97	70	2	70	2	y	ENSMUSG00000039218.18	Srrm2	chr17	protein_coding	serine/arginine repetitive matrix 2
known_NIR_7654	chr17	24022372	24027040	+	24022372;24026176	24025906;24027040	ES	ENSMUST00000190686.7	known	0.00	0	50.0	0	44;56	n	0.05	2	36.0	2	34;38	y	0.00	0	59.0	0	52;66	n	0.03	2	76.0	2	73;79	y	0.04	4	91.0	4	90;92	y	0.00	0	36.0	0	29;43	n	0.03	2	69.0	2	61;77	y	0.00	0	56.0	0	57;55	n	0.02	1	47.5	1	42;53	n	0.00	0	69.0	0	55;83	n	0.06	2	34.0	2	27;41	y	0.01	1	81.0	1	70;92	n	ENSMUSG00000039218.18	Srrm2	chr17	protein_coding	serine/arginine repetitive matrix 2
known_NIR_7655	chr17	24022372	24027040	+	24026176	24027040	A5SS&ES	ENSMUST00000186961.7	known	0.00	0	56	0	56	n	0.05	2	38	2	38	y	0.00	0	66	0	66	n	0.02	2	79	2	79	y	0.04	4	92	4	92	y	0.00	0	43	0	43	n	0.03	2	77	2	77	y	0.00	0	55	0	55	n	0.02	1	53	1	53	n	0.00	0	83	0	83	n	0.05	2	41	2	41	y	0.01	1	92	1	92	n	ENSMUSG00000039218.18	Srrm2	chr17	protein_coding	serine/arginine repetitive matrix 2
known_NIR_7656	chr17	24030705;24031051	24030791;24031402	+	24030705	24031402	cassetteExon	ENSMUST00000190686.7	known	0.10	3.5	33	7;0	33	n	0.17	3.5	17	7;0	17	n	0.17	9.5	48	17;2	48	y	0.09	4.5	44	9;0	44	n	0.14	11.0	69	22;0	69	n	0.21	7.0	27	12;2	27	y	0.10	6.0	57	11;1	57	n	0.05	2.0	40	4;0	40	n	0.15	5.5	31	11;0	31	n	0.12	6.0	43	11;1	43	n	0.19	5.5	23	11;0	23	n	0.18	11.5	53	23;0	53	n	ENSMUSG00000039218.18	Srrm2	chr17	protein_coding	serine/arginine repetitive matrix 2
known_NIR_7657	chr17	24040664	24041387	+	24040664	24040895	A3SS	ENSMUST00000186914.2	known	0.87	175	26	175	26	y	0.88	142	20	142	20	y	0.91	171	17	171	17	y	0.78	131	38	131	38	y	0.85	207	37	207	37	y	0.81	98	23	98	23	y	0.88	212	29	212	29	y	0.85	99	18	99	18	y	0.86	138	23	138	23	y	0.80	185	46	185	46	y	0.89	163	20	163	20	y	0.88	196	28	196	28	y	ENSMUSG00000039218.18	Srrm2	chr17	protein_coding	serine/arginine repetitive matrix 2
known_NIR_7658	chr17	24040664;24040989	24040895;24041387	+	24040664	24041387	cassetteExon	ENSMUST00000190686.7	known	0.10	20.0	175	26;14	175	y	0.11	17.0	142	20;14	142	y	0.06	11.5	171	17;6	171	y	0.14	22.0	131	38;6	131	y	0.11	26.0	207	37;15	207	y	0.12	13.5	98	23;4	98	y	0.08	17.5	212	29;6	212	y	0.11	12.0	99	18;6	99	y	0.09	13.5	138	23;4	138	y	0.15	32.0	185	46;18	185	y	0.08	14.0	163	20;8	163	y	0.09	20.0	196	28;12	196	y	ENSMUSG00000039218.18	Srrm2	chr17	protein_coding	serine/arginine repetitive matrix 2
known_NIR_7659	chr17	24043953;24045640	24045560;24046442	-	24043953	24046442	cassetteExon	ENSMUST00000069579.7	known	0.04	27.5	721	22;33	721	y	0.03	23.0	858	22;24	858	y	0.03	37.0	1170	30;44	1170	y	0.03	21.5	679	22;21	679	y	0.03	27.5	947	31;24	947	y	0.05	30.0	624	30;30	624	y	0.03	28.5	1078	31;26	1078	y	0.03	16.0	567	14;18	567	y	0.03	21.5	687	23;20	687	y	0.04	44.5	1154	44;45	1154	y	0.03	31.5	992	35;28	992	y	0.03	30.5	942	36;25	942	y	ENSMUSG00000055839.7	Elob	chr17	protein_coding	elongin B
known_NIR_7660	chr17	24046547	24047618	-	24046547	24047818	A5SS	ENSMUST00000069579.7	known	0.00	0	671	0	671	n	0.00	0	831	0	831	n	0.00	0	1031	0	1031	n	0.00	0	662	0	662	n	0.00	0	967	0	967	n	0.00	0	600	0	600	n	0.00	0	911	0	911	n	0.00	0	502	0	502	n	0.00	0	644	0	644	n	0.00	1	1129	1	1129	n	0.00	2	989	2	989	y	0.00	0	834	0	834	n	ENSMUSG00000055839.7	Elob	chr17	protein_coding	elongin B
known_NIR_7661	chr17	24046547	24047721	-	24046547	24047818	A5SS	ENSMUST00000069579.7	known	0.00	3	671	3	671	y	0.00	2	831	2	831	y	0.00	1	1031	1	1031	n	0.00	0	662	0	662	n	0.00	2	967	2	967	y	0.00	3	600	3	600	y	0.00	0	911	0	911	n	0.00	1	502	1	502	n	0.00	2	644	2	644	y	0.00	0	1129	0	1129	n	0.00	2	989	2	989	y	0.00	0	834	0	834	n	ENSMUSG00000055839.7	Elob	chr17	protein_coding	elongin B
known_NIR_7662	chr17	24047922	24048057	-	24047952	24048057	A3SS	ENSMUST00000069579.7	known	0.05	15	303	15	303	y	0.08	27	296	27	296	y	0.06	26	397	26	397	y	0.06	17	287	17	287	y	0.06	21	359	21	359	y	0.07	17	233	17	233	y	0.06	24	377	24	377	y	0.08	17	207	17	207	y	0.07	16	214	16	214	y	0.05	22	428	22	428	y	0.06	22	356	22	356	y	0.06	21	318	21	318	y	ENSMUSG00000055839.7	Elob	chr17	protein_coding	elongin B
known_NIR_7663	chr17	24319882	24320576	-	24319882	24329822	A5SS	ENSMUST00000140906.8	known	1.00	15	0	15	0	n	0.82	9	2	9	2	y	1.00	28	0	28	0	n	1.00	20	0	20	0	n	1.00	32	0	32	0	n	1.00	21	0	21	0	n	1.00	23	0	23	0	n	1.00	16	0	16	0	n	1.00	10	0	10	0	n	1.00	25	0	25	0	n	1.00	10	0	10	0	n	1.00	15	0	15	0	n	ENSMUSG00000024122.17	Pdpk1	chr17	protein_coding	3-phosphoinositide dependent protein kinase 1
known_NIR_7664	chr17	24319882	24329822	-	24326245	24329822	3pMXE	ENSMUST00000150578.2	known	0.00	0	7	0	7	n	0.20	2	8	2	8	y	0.00	0	29	0	29	n	0.00	0	15	0	15	n	0.00	0	19	0	19	n	0.00	0	7	0	7	n	0.00	0	25	0	25	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	ENSMUSG00000024122.17	Pdpk1	chr17	protein_coding	3-phosphoinositide dependent protein kinase 1
known_NIR_7665	chr17	24383856	24387689	-	24383856	24388180	A5SS	ENSMUST00000024932.12	known	0.00	0	734	0	734	n	0.00	0	689	0	689	n	0.00	2	1096	2	1096	y	0.00	1	759	1	759	n	0.00	0	1002	0	1002	n	0.00	0	619	0	619	n	0.00	0	891	0	891	n	0.00	0	555	0	555	n	0.00	0	560	0	560	n	0.00	0	916	0	916	n	0.00	0	671	0	671	n	0.00	0	828	0	828	n	ENSMUSG00000024121.14	Atp6v0c	chr17	protein_coding	ATPase, H+ transporting, lysosomal V0 subunit C
known_NIR_7666	chr17	24383856	24388577	-	24383856	24388180	5pMXE	ENSMUST00000024932.12	known	0.00	0	734	0	734	n	0.00	0	689	0	689	n	0.00	0	1096	0	1096	n	0.00	0	759	0	759	n	0.00	2	1002	2	1002	y	0.00	0	619	0	619	n	0.00	2	891	2	891	y	0.00	0	555	0	555	n	0.00	0	560	0	560	n	0.00	1	916	1	916	n	0.00	0	671	0	671	n	0.00	1	828	1	828	n	ENSMUSG00000024121.14	Atp6v0c	chr17	protein_coding	ATPase, H+ transporting, lysosomal V0 subunit C
known_NIR_7667	chr17	24383856	24388577	-	24383856;24388260	24388180;24388577	ES	ENSMUST00000098862.9	known	0.00	0	369.5	0	734;5	n	0.00	0	348.5	0	689;8	n	0.00	0	557.5	0	1096;19	n	0.00	0	385.0	0	759;11	n	0.00	2	504.0	2	1002;6	y	0.00	0	312.0	0	619;5	n	0.00	2	451.5	2	891;12	y	0.00	0	279.5	0	555;4	n	0.00	0	282.5	0	560;5	n	0.00	1	465.0	1	916;14	n	0.00	0	342.5	0	671;14	n	0.00	1	419.5	1	828;11	n	ENSMUSG00000024121.14	Atp6v0c	chr17	protein_coding	ATPase, H+ transporting, lysosomal V0 subunit C
known_NIR_7668	chr17	24402822	24404178	-	24402826	24404178	A3SS	ENSMUST00000168410.9	known	0.00	0	8	0	8	n	0.14	2	12	2	12	y	0.18	9	42	9	42	y	0.00	0	10	0	10	n	0.15	4	23	4	23	y	0.00	0	20	0	20	n	0.00	0	9	0	9	n	0.14	4	24	4	24	y	0.17	1	5	1	5	n	0.00	0	19	0	19	n	0.00	0	4	0	4	n	0.00	0	15	0	15	n	ENSMUSG00000036473.17	Tbc1d24	chr17	protein_coding	TBC1 domain family, member 24
known_NIR_7669	chr17	24402822	24404178	-	24403372	24404178	A3SS&ES	ENSMUST00000097376.10	known	0.00	0	2	0	2	n	0.67	2	1	2	1	n	0.69	9	4	9	4	y	0.00	0	1	0	1	n	0.40	4	6	4	6	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.36	4	7	4	7	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000036473.17	Tbc1d24	chr17	protein_coding	TBC1 domain family, member 24
known_NIR_7670	chr17	24402826	24404178	-	24402826	24408918	A5SS	ENSMUST00000201583.2	known	1.00	8	0	8	0	n	1.00	12	0	12	0	n	1.00	42	0	42	0	n	1.00	10	0	10	0	n	1.00	23	0	23	0	n	0.91	20	2	20	2	y	1.00	9	0	9	0	n	1.00	24	0	24	0	n	1.00	5	0	5	0	n	1.00	19	0	19	0	n	1.00	4	0	4	0	n	1.00	15	0	15	0	n	ENSMUSG00000036473.17	Tbc1d24	chr17	protein_coding	TBC1 domain family, member 24
known_NIR_7671	chr17	24402826	24408918	-	24402826;24405175	24404178;24408918	ES	ENSMUST00000168410.9	known	0.00	0	6.5	0	8;5	n	0.00	0	7.5	0	12;3	n	0.00	0	25.5	0	42;9	n	0.00	0	6.0	0	10;2	n	0.00	0	21.5	0	23;20	n	0.11	2	17.0	2	20;14	y	0.00	0	7.5	0	9;6	n	0.00	0	19.0	0	24;14	n	0.00	0	3.0	0	5;1	n	0.00	0	14.5	0	19;10	n	0.00	0	3.0	0	4;2	n	0.00	0	9.0	0	15;3	n	ENSMUSG00000036473.17	Tbc1d24	chr17	protein_coding	TBC1 domain family, member 24
known_NIR_7672	chr17	24402826	24408918	-	24402826;24405261	24404178;24408918	ES	ENSMUST00000040474.11	known	0.00	0	7.0	0	8;6	n	0.00	0	8.0	0	12;4	n	0.00	0	29.5	0	42;17	n	0.00	0	5.5	0	10;1	n	0.00	0	19.5	0	23;16	n	0.13	2	13.0	2	20;6	y	0.00	0	10.5	0	9;12	n	0.00	0	17.5	0	24;11	n	0.00	0	4.0	0	5;3	n	0.00	0	13.0	0	19;7	n	0.00	0	2.0	0	4;0	n	0.00	0	13.0	0	15;11	n	ENSMUSG00000036473.17	Tbc1d24	chr17	protein_coding	TBC1 domain family, member 24
known_NIR_7673	chr17	24402826	24408918	-	24405175	24408918	A3SS&ES	ENSMUST00000201359.4	known	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	20	0	20	n	0.12	2	14	2	14	y	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000036473.17	Tbc1d24	chr17	protein_coding	TBC1 domain family, member 24
known_NIR_7674	chr17	24402826;24403372	24403355;24404178	-	24402826	24404178	cassetteExon	ENSMUST00000168410.9	known	0.16	1.5	8	1;2	8	n	0.11	1.5	12	2;1	12	n	0.09	4.0	42	4;4	42	y	0.05	0.5	10	0;1	10	n	0.19	5.5	23	5;6	23	y	0.05	1.0	20	1;1	20	n	0.10	1.0	9	1;1	9	n	0.23	7.0	24	7;7	24	y	0.09	0.5	5	1;0	5	n	0.07	1.5	19	2;1	19	n	0.00	0.0	4	0;0	4	n	0.09	1.5	15	2;1	15	n	ENSMUSG00000036473.17	Tbc1d24	chr17	protein_coding	TBC1 domain family, member 24
known_NIR_7675	chr17	24405261	24408918	-	24405175	24408918	A3SS	ENSMUST00000168410.9	known	0.55	6	5	6	5	y	0.57	4	3	4	3	n	0.65	17	9	17	9	y	0.33	1	2	1	2	n	0.44	16	20	16	20	y	0.30	6	14	6	14	y	0.67	12	6	12	6	y	0.44	11	14	11	14	y	0.75	3	1	3	1	n	0.41	7	10	7	10	y	0.00	0	2	0	2	n	0.79	11	3	11	3	y	ENSMUSG00000036473.17	Tbc1d24	chr17	protein_coding	TBC1 domain family, member 24
known_NIR_7676	chr17	24409027	24424468	-	24409027	24424448	A5SS	ENSMUST00000168410.9	known	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.03	1	36	1	36	n	0.00	0	12	0	12	n	0.03	1	31	1	31	n	0.00	0	15	0	15	n	0.12	2	14	2	14	y	0.00	0	24	0	24	n	0.00	0	6	0	6	n	0.08	1	12	1	12	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	ENSMUSG00000036473.17	Tbc1d24	chr17	protein_coding	TBC1 domain family, member 24
known_NIR_7677	chr17	24439284	24439496	-	24439284	24439491	A5SS	ENSMUST00000024930.8	known	0.19	54	237	54	237	y	0.19	50	209	50	209	y	0.14	32	190	32	190	y	0.14	38	240	38	240	y	0.20	80	322	80	322	y	0.15	23	129	23	129	y	0.16	51	263	51	263	y	0.17	35	170	35	170	y	0.17	22	109	22	109	y	0.18	50	231	50	231	y	0.13	21	144	21	144	y	0.14	21	130	21	130	y	ENSMUSG00000024118.15	Tedc2	chr17	protein_coding	tubulin epsilon and delta complex 2
known_NIR_7678	chr17	24571225	24579862	+	24571225	24576893	A3SS&ES	ENSMUST00000155889.2	known	0.05	1	18	1	18	n	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.04	2	43	2	43	y	0.03	1	38	1	38	n	0.00	0	8	0	8	n	0.14	4	25	4	25	y	0.00	0	18	0	18	n	0.00	0	16	0	16	n	0.04	2	50	2	50	y	0.00	0	10	0	10	n	0.03	1	35	1	35	n	ENSMUSG00000024130.17	Abca3	chr17	protein_coding	ATP-binding cassette, sub-family A (ABC1), member 3
known_NIR_7679	chr17	24571225;24576965	24576893;24579862	+	24571225	24579862	cassetteExon	ENSMUST00000133816.8	known	0.95	20.5	1	18;23	1	n	1.00	12.0	0	12;12	0	n	1.00	14.0	0	13;15	0	n	0.96	43.5	2	43;44	2	y	0.97	37.0	1	38;36	1	n	1.00	16.0	0	8;24	0	n	0.89	31.0	4	25;37	4	y	1.00	19.5	0	18;21	0	n	1.00	20.0	0	16;24	0	n	0.96	45.5	2	50;41	2	y	1.00	16.5	0	10;23	0	n	0.98	47.5	1	35;60	1	n	ENSMUSG00000024130.17	Abca3	chr17	protein_coding	ATP-binding cassette, sub-family A (ABC1), member 3
known_NIR_7680	chr17	24633708	24637012	+	24633708	24634015	3pMXE	ENSMUST00000234729.2	known	0.00	0	6	0	6	n	0.43	6	8	6	8	y	0.58	11	8	11	8	y	0.36	4	7	4	7	y	0.38	5	8	5	8	y	0.43	3	4	3	4	n	0.44	4	5	4	5	n	0.56	5	4	5	4	n	0.67	4	2	4	2	n	0.27	3	8	3	8	y	0.00	0	6	0	6	n	0.43	6	8	6	8	y	ENSMUSG00000034681.18	Rnps1	chr17	protein_coding	RNA binding protein with serine rich domain 1
known_NIR_7681	chr17	24633708	24637431	+	24633708	24634015	3pMXE	ENSMUST00000234729.2	known	0.87	40	6	40	6	y	0.78	28	8	28	8	y	0.89	65	8	65	8	y	0.84	38	7	38	7	y	0.83	39	8	39	8	y	0.90	36	4	36	4	y	0.90	45	5	45	5	y	0.89	32	4	32	4	y	0.95	38	2	38	2	y	0.83	38	8	38	8	y	0.83	29	6	29	6	y	0.87	53	8	53	8	y	ENSMUSG00000034681.18	Rnps1	chr17	protein_coding	RNA binding protein with serine rich domain 1
known_NIR_7682	chr17	24633708;24634136	24634015;24637012	+	24633708	24637012	cassetteExon	ENSMUST00000088512.13	known	1.00	5.0	0	6;4	0	n	0.45	5.0	6	8;2	6	y	0.50	11.0	11	8;14	11	y	0.50	4.0	4	7;1	4	n	0.52	5.5	5	8;3	5	y	0.40	2.0	3	4;0	3	n	0.60	6.0	4	5;7	4	y	0.50	5.0	5	4;6	5	y	0.43	3.0	4	2;4	4	y	0.65	5.5	3	8;3	3	y	1.00	6.0	0	6;6	0	n	0.50	6.0	6	8;4	6	y	ENSMUSG00000034681.18	Rnps1	chr17	protein_coding	RNA binding protein with serine rich domain 1
known_NIR_7683	chr17	24633708;24634136	24634015;24637431	+	24633708	24637431	cassetteExon	ENSMUST00000115371.9	known	0.14	6.5	40	6;7	40	y	0.25	9.5	28	8;11	28	y	0.14	11.0	65	8;14	65	y	0.20	9.5	38	7;12	38	y	0.27	14.5	39	8;21	39	y	0.17	7.5	36	4;11	36	y	0.22	13.0	45	5;21	45	y	0.19	7.5	32	4;11	32	y	0.14	6.0	38	2;10	38	y	0.21	10.0	38	8;12	38	y	0.25	9.5	29	6;13	29	y	0.17	11.0	53	8;14	53	y	ENSMUSG00000034681.18	Rnps1	chr17	protein_coding	RNA binding protein with serine rich domain 1
known_NIR_7684	chr17	24633708;24637192	24637012;24637431	+	24633708	24637431	cassetteExon	ENSMUST00000115371.9	known	0.13	6.0	40	0;12	40	n	0.19	6.5	28	6;7	28	y	0.22	18.0	65	11;25	65	y	0.18	8.5	38	4;13	38	y	0.23	11.5	39	5;18	39	y	0.10	4.0	36	3;5	36	y	0.18	10.0	45	4;16	45	y	0.16	6.0	32	5;7	32	y	0.08	3.5	38	4;3	38	y	0.16	7.0	38	3;11	38	y	0.28	11.5	29	0;23	29	n	0.15	9.0	53	6;12	53	y	ENSMUSG00000034681.18	Rnps1	chr17	protein_coding	RNA binding protein with serine rich domain 1
known_NIR_7685	chr17	24633708;24637192	24637012;24637431	+	24633708;24634136	24634015;24637431	MXE	ENSMUST00000234977.2	known	0.48	6.0	6.5	0;12	6;7	n	0.41	6.5	9.5	6;7	8;11	y	0.62	18.0	11.0	11;25	8;14	y	0.47	8.5	9.5	4;13	7;12	y	0.44	11.5	14.5	5;18	8;21	y	0.35	4.0	7.5	3;5	4;11	y	0.43	10.0	13.0	4;16	5;21	y	0.44	6.0	7.5	5;7	4;11	y	0.37	3.5	6.0	4;3	2;10	y	0.41	7.0	10.0	3;11	8;12	y	0.55	11.5	9.5	0;23	6;13	n	0.45	9.0	11.0	6;12	8;14	y	ENSMUSG00000034681.18	Rnps1	chr17	protein_coding	RNA binding protein with serine rich domain 1
known_NIR_7686	chr17	24634136;24637192	24637012;24637431	+	24634136	24637431	cassetteExon	ENSMUST00000234977.2	known	0.53	8.0	7	4;12	7	y	0.29	4.5	11	2;7	11	y	0.58	19.5	14	14;25	14	y	0.37	7.0	12	1;13	12	n	0.33	10.5	21	3;18	21	y	0.19	2.5	11	0;5	11	n	0.35	11.5	21	7;16	21	y	0.37	6.5	11	6;7	11	y	0.26	3.5	10	4;3	10	y	0.37	7.0	12	3;11	12	y	0.53	14.5	13	6;23	13	y	0.36	8.0	14	4;12	14	y	ENSMUSG00000034681.18	Rnps1	chr17	protein_coding	RNA binding protein with serine rich domain 1
known_NIR_7687	chr17	24645913	24652116	+	24645913	24652107	A3SS	ENSMUST00000234304.2	known	0.06	22	333	22	333	y	0.00	0	279	0	279	n	0.00	0	174	0	174	n	0.00	0	376	0	376	n	0.00	0	415	0	415	n	0.00	0	136	0	136	n	0.11	65	540	65	540	y	0.00	0	184	0	184	n	0.10	33	296	33	296	y	0.08	60	704	60	704	y	0.00	0	418	0	418	n	0.00	0	314	0	314	n	ENSMUSG00000024132.7	Eci1	chr17	protein_coding	enoyl-Coenzyme A delta isomerase 1
known_NIR_7688	chr17	24646096	24652107	+	24645913	24652107	A5SS	ENSMUST00000234304.2	known	0.00	0	333	0	333	n	0.00	1	279	1	279	n	0.00	0	174	0	174	n	0.00	0	376	0	376	n	0.00	0	415	0	415	n	0.00	0	136	0	136	n	0.00	1	540	1	540	n	0.00	0	184	0	184	n	0.00	0	296	0	296	n	0.00	1	704	1	704	n	0.01	3	418	3	418	y	0.00	0	314	0	314	n	ENSMUSG00000024132.7	Eci1	chr17	protein_coding	enoyl-Coenzyme A delta isomerase 1
known_NIR_7689	chr17	24664287	24664420	-	24664313	24664420	A3SS	ENSMUST00000227293.2	known	0.19	4	17	4	17	y	0.08	1	12	1	12	n	0.33	4	8	4	8	y	0.00	0	11	0	11	n	0.21	7	27	7	27	y	0.00	0	9	0	9	n	0.12	2	14	2	14	y	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.23	3	10	3	10	y	0.00	0	9	0	9	n	0.27	4	11	4	11	y	ENSMUSG00000024137.10	E4f1	chr17	protein_coding	E4F transcription factor 1
known_NIR_7690	chr17	24664525	24664920	-	24664528	24664920	A3SS	ENSMUST00000227293.2	known	0.17	4	20	4	20	y	0.25	4	12	4	12	y	0.20	2	8	2	8	y	0.20	2	8	2	8	y	0.29	5	12	5	12	y	0.54	7	6	7	6	y	0.33	6	12	6	12	y	0.12	1	7	1	7	n	0.22	2	7	2	7	n	0.37	7	12	7	12	y	0.45	5	6	5	6	y	0.20	4	16	4	16	y	ENSMUSG00000024137.10	E4f1	chr17	protein_coding	E4F transcription factor 1
known_NIR_7691	chr17	24665815	24666064	-	24665908	24666064	A3SS	ENSMUST00000056032.9	known	0.08	1	12	1	12	n	0.09	2	21	2	21	y	0.33	3	6	3	6	n	0.18	2	9	2	9	y	0.06	1	17	1	17	n	0.08	1	12	1	12	n	0.00	0	14	0	14	n	0.14	2	12	2	12	y	0.05	1	20	1	20	n	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.07	2	27	2	27	y	ENSMUSG00000024137.10	E4f1	chr17	protein_coding	E4F transcription factor 1
known_NIR_7692	chr17	24731360	24731930	-	24731360	24731924	A5SS	ENSMUST00000176652.8	known	0.00	0	15	0	15	n	0.12	1	7	1	7	n	0.06	2	29	2	29	y	0.15	2	11	2	11	y	0.10	3	26	3	26	y	0.14	2	12	2	12	y	0.07	2	26	2	26	y	0.31	5	11	5	11	y	0.00	0	18	0	18	n	0.11	2	16	2	16	y	0.18	3	14	3	14	y	0.17	4	20	4	20	y	ENSMUSG00000052752.16	Traf7	chr17	protein_coding	TNF receptor-associated factor 7
known_NIR_7693	chr17	24733191	24735479	-	24733191	24733687	5pMXE	ENSMUST00000177502.8	known	0.36	9	16	9	16	y	0.31	4	9	4	9	y	0.35	11	20	11	20	y	0.18	3	14	3	14	y	0.47	19	21	19	21	y	0.35	7	13	7	13	y	0.17	4	19	4	19	y	0.15	2	11	2	11	y	0.27	6	16	6	16	y	0.25	7	21	7	21	y	0.20	3	12	3	12	y	0.08	2	22	2	22	y	ENSMUSG00000052752.16	Traf7	chr17	protein_coding	TNF receptor-associated factor 7
known_NIR_7694	chr17	24733191	24735479	-	24733191;24733803	24733687;24735479	ES	ENSMUST00000176652.8	known	0.41	9	13.0	9	16;10	y	0.32	4	8.5	4	9;8	y	0.31	11	24.5	11	20;29	y	0.21	3	11.0	3	14;8	y	0.49	19	19.5	19	21;18	y	0.33	7	14.5	7	13;16	y	0.15	4	22.5	4	19;26	y	0.11	2	16.5	2	11;22	y	0.32	6	12.5	6	16;9	y	0.29	7	17.0	7	21;13	y	0.20	3	12.0	3	12;12	y	0.09	2	20.0	2	22;18	y	ENSMUSG00000052752.16	Traf7	chr17	protein_coding	TNF receptor-associated factor 7
known_NIR_7695	chr17	24733191	24735479	-	24733803	24735479	3pMXE	ENSMUST00000177025.2	known	0.47	9	10	9	10	y	0.33	4	8	4	8	y	0.28	11	29	11	29	y	0.27	3	8	3	8	y	0.51	19	18	19	18	y	0.30	7	16	7	16	y	0.13	4	26	4	26	y	0.08	2	22	2	22	y	0.40	6	9	6	9	y	0.35	7	13	7	13	y	0.20	3	12	3	12	y	0.10	2	18	2	18	y	ENSMUSG00000052752.16	Traf7	chr17	protein_coding	TNF receptor-associated factor 7
known_NIR_7696	chr17	24733191;24733803	24733687;24737716	-	24733191;24735570	24735479;24737716	MXE	ENSMUST00000176237.8	known	0.40	8.0	12.0	16;0	9;15	n	0.35	4.5	8.5	9;0	4;13	n	0.42	11.0	15.5	20;2	11;20	y	0.45	7.0	8.5	14;0	3;14	n	0.34	11.0	21.5	21;1	19;24	n	0.48	7.0	7.5	13;1	7;8	n	0.48	10.5	11.5	19;2	4;19	y	0.50	5.5	5.5	11;0	2;9	n	0.47	8.0	9.0	16;0	6;12	n	0.52	11.0	10.0	21;1	7;13	n	0.57	6.0	4.5	12;0	3;6	n	0.73	12.0	4.5	22;2	2;7	y	ENSMUSG00000052752.16	Traf7	chr17	protein_coding	TNF receptor-associated factor 7
known_NIR_7697	chr17	24733191;24733803	24733687;24737716	-	24733191;24735573	24735479;24737716	MXE	ENSMUST00000070777.13	known	0.47	8.0	9.0	16;0	9;9	n	0.43	4.5	6.0	9;0	4;8	n	0.42	11.0	15.5	20;2	11;20	y	0.64	7.0	4.0	14;0	3;5	n	0.46	11.0	13.0	21;1	19;7	n	0.40	7.0	10.5	13;1	7;14	n	0.53	10.5	9.5	19;2	4;15	y	0.48	5.5	6.0	11;0	2;10	n	0.55	8.0	6.5	16;0	6;7	n	0.58	11.0	8.0	21;1	7;9	n	0.50	6.0	6.0	12;0	3;9	n	0.56	12.0	9.5	22;2	2;17	y	ENSMUSG00000052752.16	Traf7	chr17	protein_coding	TNF receptor-associated factor 7
known_NIR_7698	chr17	24733191;24733840	24733687;24735479	-	24733191	24735479	cassetteExon	ENSMUST00000070777.13	known	0.47	8.0	9	16;0	9	n	0.53	4.5	4	9;0	4	n	0.51	11.5	11	20;3	11	y	0.70	7.0	3	14;0	3	n	0.37	11.0	19	21;1	19	n	0.48	6.5	7	13;0	7	n	0.71	10.0	4	19;1	4	n	0.73	5.5	2	11;0	2	n	0.57	8.0	6	16;0	6	n	0.61	11.0	7	21;1	7	n	0.67	6.0	3	12;0	3	n	0.85	11.5	2	22;1	2	n	ENSMUSG00000052752.16	Traf7	chr17	protein_coding	TNF receptor-associated factor 7
known_NIR_7699	chr17	24733803	24737716	-	24733803;24735570	24735479;24737716	ES	ENSMUST00000176652.8	known	0.00	0	12.5	0	10;15	n	0.00	0	10.5	0	8;13	n	0.08	2	24.5	2	29;20	y	0.00	0	11.0	0	8;14	n	0.05	1	21.0	1	18;24	n	0.08	1	12.0	1	16;8	n	0.08	2	22.5	2	26;19	y	0.00	0	15.5	0	22;9	n	0.00	0	10.5	0	9;12	n	0.07	1	13.0	1	13;13	n	0.00	0	9.0	0	12;6	n	0.14	2	12.5	2	18;7	y	ENSMUSG00000052752.16	Traf7	chr17	protein_coding	TNF receptor-associated factor 7
known_NIR_7700	chr17	24733803	24737716	-	24733803;24735573	24735479;24737716	ES	ENSMUST00000176086.8	known	0.00	0	9.5	0	10;9	n	0.00	0	8.0	0	8;8	n	0.08	2	24.5	2	29;20	y	0.00	0	6.5	0	8;5	n	0.07	1	12.5	1	18;7	n	0.06	1	15.0	1	16;14	n	0.09	2	20.5	2	26;15	y	0.00	0	16.0	0	22;10	n	0.00	0	8.0	0	9;7	n	0.08	1	11.0	1	13;9	n	0.00	0	10.5	0	12;9	n	0.10	2	17.5	2	18;17	y	ENSMUSG00000052752.16	Traf7	chr17	protein_coding	TNF receptor-associated factor 7
known_NIR_7701	chr17	24733803	24737716	-	24735570	24737716	A3SS&ES	ENSMUST00000177405.8	known	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.09	2	20	2	20	y	0.00	0	14	0	14	n	0.04	1	24	1	24	n	0.11	1	8	1	8	n	0.10	2	19	2	19	y	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.07	1	13	1	13	n	0.00	0	6	0	6	n	0.22	2	7	2	7	n	ENSMUSG00000052752.16	Traf7	chr17	protein_coding	TNF receptor-associated factor 7
known_NIR_7702	chr17	24733803	24737716	-	24735573	24737716	A3SS&ES	ENSMUST00000176668.8	known	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.09	2	20	2	20	y	0.00	0	5	0	5	n	0.12	1	7	1	7	n	0.07	1	14	1	14	n	0.12	2	15	2	15	y	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.10	1	9	1	9	n	0.00	0	9	0	9	n	0.11	2	17	2	17	y	ENSMUSG00000052752.16	Traf7	chr17	protein_coding	TNF receptor-associated factor 7
known_NIR_7703	chr17	24733840	24735479	-	24733803	24735479	A3SS	ENSMUST00000176652.8	known	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.09	3	29	3	29	y	0.00	0	8	0	8	n	0.05	1	18	1	18	n	0.00	0	16	0	16	n	0.04	1	26	1	26	n	0.00	0	22	0	22	n	0.00	0	9	0	9	n	0.07	1	13	1	13	n	0.00	0	12	0	12	n	0.05	1	18	1	18	n	ENSMUSG00000052752.16	Traf7	chr17	protein_coding	TNF receptor-associated factor 7
known_NIR_7704	chr17	24735573	24737716	-	24735570	24737716	A3SS	ENSMUST00000176652.8	known	0.38	9	15	9	15	y	0.38	8	13	8	13	y	0.50	20	20	20	20	y	0.26	5	14	5	14	y	0.23	7	24	7	24	y	0.64	14	8	14	8	y	0.44	15	19	15	19	y	0.53	10	9	10	9	y	0.37	7	12	7	12	y	0.41	9	13	9	13	y	0.60	9	6	9	6	y	0.71	17	7	17	7	y	ENSMUSG00000052752.16	Traf7	chr17	protein_coding	TNF receptor-associated factor 7
known_NIR_7705	chr17	24737467	24737716	-	24735570	24737716	A3SS	ENSMUST00000176652.8	known	0.00	0	15	0	15	n	0.07	1	13	1	13	n	0.09	2	20	2	20	y	0.00	0	14	0	14	n	0.04	1	24	1	24	n	0.00	0	8	0	8	n	0.00	0	19	0	19	n	0.10	1	9	1	9	n	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	ENSMUSG00000052752.16	Traf7	chr17	protein_coding	TNF receptor-associated factor 7
known_NIR_7706	chr17	24737467	24737716	-	24735573	24737716	A3SS	ENSMUST00000070777.13	known	0.00	0	9	0	9	n	0.11	1	8	1	8	n	0.09	2	20	2	20	y	0.00	0	5	0	5	n	0.12	1	7	1	7	n	0.00	0	14	0	14	n	0.00	0	15	0	15	n	0.09	1	10	1	10	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	17	0	17	n	ENSMUSG00000052752.16	Traf7	chr17	protein_coding	TNF receptor-associated factor 7
known_NIR_7707	chr17	24737768	24738105	-	24737773	24738105	A3SS	ENSMUST00000176652.8	known	0.00	0	23	0	23	n	0.07	1	14	1	14	n	0.00	0	29	0	29	n	0.00	0	21	0	21	n	0.08	3	34	3	34	y	0.05	1	18	1	18	n	0.05	1	19	1	19	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	17	0	17	n	0.12	1	7	1	7	n	0.06	1	17	1	17	n	ENSMUSG00000052752.16	Traf7	chr17	protein_coding	TNF receptor-associated factor 7
known_NIR_7708	chr17	24737773	24738088	-	24737773	24738105	A5SS	ENSMUST00000176652.8	known	0.00	0	23	0	23	n	0.07	1	14	1	14	n	0.00	0	29	0	29	n	0.09	2	21	2	21	y	0.06	2	34	2	34	y	0.00	0	18	0	18	n	0.17	4	19	4	19	y	0.17	2	10	2	10	y	0.30	3	7	3	7	y	0.00	0	17	0	17	n	0.00	0	7	0	7	n	0.06	1	17	1	17	n	ENSMUSG00000052752.16	Traf7	chr17	protein_coding	TNF receptor-associated factor 7
known_NIR_7709	chr17	24738220	24746429	-	24738220	24746740	A5SS	ENSMUST00000176652.8	known	0.00	0	12	0	12	n	0.06	1	16	1	16	n	0.00	0	21	0	21	n	0.06	1	17	1	17	n	0.00	0	23	0	23	n	0.20	3	12	3	12	y	0.00	0	18	0	18	n	0.12	2	15	2	15	y	0.20	1	4	1	4	n	0.00	0	22	0	22	n	0.17	2	10	2	10	y	0.06	1	17	1	17	n	ENSMUSG00000052752.16	Traf7	chr17	protein_coding	TNF receptor-associated factor 7
known_NIR_7710	chr17	24787313	24787603	+	24787313	24787600	A3SS	ENSMUST00000035565.5	known	0.67	2	1	2	1	n	0.33	1	2	1	2	n	0.60	6	4	6	4	y	0.43	3	4	3	4	n	0.71	5	2	5	2	n	0.67	4	2	4	2	n	1.00	2	0	2	0	n	0.75	3	1	3	1	n	0.20	1	4	1	4	n	0.67	2	1	2	1	n	0.50	1	1	1	1	n	0.75	3	1	3	1	n	ENSMUSG00000032855.7	Pkd1	chr17	protein_coding	polycystin 1, transient receptor poteintial channel interacting
known_NIR_7711	chr17	24805562	24806374	+	24805562;24806266	24806153;24806374	ES	ENSMUST00000035565.5	known	0.12	1	7.5	1	10;5	n	0.15	2	11.0	2	9;13	y	0.17	3	15.0	3	13;17	y	0.40	6	9.0	6	7;11	y	0.16	3	15.5	3	14;17	y	0.00	0	7.0	0	7;7	n	0.24	4	13.0	4	12;14	y	0.42	5	7.0	5	4;10	y	0.56	7	5.5	7	4;7	y	0.11	2	16.0	2	15;17	y	0.40	4	6.0	4	4;8	y	0.29	6	14.5	6	13;16	y	ENSMUSG00000032855.7	Pkd1	chr17	protein_coding	polycystin 1, transient receptor poteintial channel interacting
known_NIR_7712	chr17	24810455	24811585	+	24810455;24810951	24810812;24811585	ES	ENSMUST00000035565.5	known	0.12	3	21.5	3	19;24	y	0.00	0	17.5	0	7;28	n	0.04	1	24.0	1	22;26	n	0.07	1	12.5	1	9;16	n	0.00	0	35.0	0	28;42	n	0.00	0	9.5	0	6;13	n	0.04	1	22.0	1	18;26	n	0.00	0	17.5	0	11;24	n	0.00	0	21.0	0	22;20	n	0.00	0	29.5	0	28;31	n	0.00	0	12.5	0	8;17	n	0.00	0	30.5	0	24;37	n	ENSMUSG00000032855.7	Pkd1	chr17	protein_coding	polycystin 1, transient receptor poteintial channel interacting
known_NIR_7713	chr17	24816037	24816179	-	24816111	24816179	A3SS	ENSMUST00000226284.2	known	0.06	4	66	4	66	y	0.06	5	75	5	75	y	0.03	2	59	2	59	y	0.05	3	55	3	55	y	0.09	6	60	6	60	y	0.03	1	34	1	34	n	0.08	6	73	6	73	y	0.15	7	39	7	39	y	0.04	2	46	2	46	y	0.05	5	96	5	96	y	0.02	1	56	1	56	n	0.03	2	60	2	60	y	ENSMUSG00000002496.11	Tsc2	chr17	protein_coding	TSC complex subunit 2
known_NIR_7714	chr17	24819439;24820431	24820363;24821068	-	24819439	24821068	cassetteExon	ENSMUST00000226284.2	known	0.37	12.5	21	15;10	21	y	0.27	11.5	31	9;14	31	y	0.24	10.0	31	15;5	31	y	0.33	14.5	30	19;10	30	y	0.44	24.0	31	24;24	31	y	0.33	8.0	16	6;10	16	y	0.46	31.0	36	29;33	36	y	0.25	8.5	26	8;9	26	y	0.26	8.0	23	10;6	23	y	0.39	27.5	43	23;32	43	y	0.39	20.5	32	20;21	32	y	0.35	20.5	38	20;21	38	y	ENSMUSG00000002496.11	Tsc2	chr17	protein_coding	TSC complex subunit 2
known_NIR_7715	chr17	24823963	24825198	-	24823966	24825198	A3SS	ENSMUST00000226284.2	known	0.00	0	10	0	10	n	0.20	1	4	1	4	n	0.55	6	5	6	5	y	0.21	3	11	3	11	y	0.31	4	9	4	9	y	0.27	4	11	4	11	y	0.50	8	8	8	8	y	0.33	3	6	3	6	n	0.29	2	5	2	5	n	0.00	0	5	0	5	n	0.67	2	1	2	1	n	0.42	5	7	5	7	y	ENSMUSG00000002496.11	Tsc2	chr17	protein_coding	TSC complex subunit 2
known_NIR_7716	chr17	24823963	24826411	-	24823963	24825198	5pMXE	ENSMUST00000228729.2	known	1.00	6	0	6	0	n	0.92	11	1	11	1	n	0.73	16	6	16	6	y	0.86	19	3	19	3	y	0.82	18	4	18	4	y	0.50	4	4	4	4	n	0.60	12	8	12	8	y	0.82	14	3	14	3	y	0.89	16	2	16	2	y	1.00	26	0	26	0	n	0.87	13	2	13	2	y	0.72	13	5	13	5	y	ENSMUSG00000002496.11	Tsc2	chr17	protein_coding	TSC complex subunit 2
known_NIR_7717	chr17	24823963	24826411	-	24823966	24826411	A3SS	ENSMUST00000097373.2	known	0.35	6	11	6	11	y	0.42	11	15	11	15	y	0.70	16	7	16	7	y	0.61	19	12	19	12	y	0.72	18	7	18	7	y	0.36	4	7	4	7	y	0.40	12	18	12	18	y	0.52	14	13	14	13	y	0.70	16	7	16	7	y	0.59	26	18	26	18	y	0.59	13	9	13	9	y	0.50	13	13	13	13	y	ENSMUSG00000002496.11	Tsc2	chr17	protein_coding	TSC complex subunit 2
known_NIR_7718	chr17	24823963	24826411	-	24825326	24826411	A3SS&ES	ENSMUST00000226284.2	known	0.60	6	4	6	4	y	1.00	11	0	11	0	n	0.62	16	10	16	10	y	0.79	19	5	19	5	y	0.69	18	8	18	8	y	0.33	4	8	4	8	y	0.43	12	16	12	16	y	0.70	14	6	14	6	y	0.76	16	5	16	5	y	0.79	26	7	26	7	y	0.87	13	2	13	2	y	0.68	13	6	13	6	y	ENSMUSG00000002496.11	Tsc2	chr17	protein_coding	TSC complex subunit 2
known_NIR_7719	chr17	24823963;24825326	24825198;24826411	-	24823963	24826411	cassetteExon	ENSMUST00000228412.2	known	0.25	2.0	6	0;4	6	n	0.04	0.5	11	1;0	11	n	0.33	8.0	16	6;10	16	y	0.17	4.0	19	3;5	19	y	0.25	6.0	18	4;8	18	y	0.60	6.0	4	4;8	4	y	0.50	12.0	12	8;16	12	y	0.24	4.5	14	3;6	14	y	0.18	3.5	16	2;5	16	y	0.12	3.5	26	0;7	26	n	0.13	2.0	13	2;2	13	y	0.30	5.5	13	5;6	13	y	ENSMUSG00000002496.11	Tsc2	chr17	protein_coding	TSC complex subunit 2
known_NIR_7720	chr17	24823966	24826411	-	24823966	24825198	5pMXE	ENSMUST00000226428.2	known	0.52	11	10	11	10	y	0.79	15	4	15	4	y	0.58	7	5	7	5	y	0.52	12	11	12	11	y	0.44	7	9	7	9	y	0.39	7	11	7	11	y	0.69	18	8	18	8	y	0.68	13	6	13	6	y	0.58	7	5	7	5	y	0.78	18	5	18	5	y	0.90	9	1	9	1	n	0.65	13	7	13	7	y	ENSMUSG00000002496.11	Tsc2	chr17	protein_coding	TSC complex subunit 2
known_NIR_7721	chr17	24823966	24826411	-	24823966;24825326	24825198;24826411	ES	ENSMUST00000226284.2	known	0.61	11	7.0	11	10;4	y	0.88	15	2.0	15	4;0	n	0.48	7	7.5	7	5;10	y	0.60	12	8.0	12	11;5	y	0.45	7	8.5	7	9;8	y	0.42	7	9.5	7	11;8	y	0.60	18	12.0	18	8;16	y	0.68	13	6.0	13	6;6	y	0.58	7	5.0	7	5;5	y	0.75	18	6.0	18	5;7	y	0.86	9	1.5	9	1;2	n	0.67	13	6.5	13	7;6	y	ENSMUSG00000002496.11	Tsc2	chr17	protein_coding	TSC complex subunit 2
known_NIR_7722	chr17	24823966	24826411	-	24825326	24826411	A3SS&ES	ENSMUST00000227658.2	known	0.73	11	4	11	4	y	1.00	15	0	15	0	n	0.41	7	10	7	10	y	0.71	12	5	12	5	y	0.47	7	8	7	8	y	0.47	7	8	7	8	y	0.53	18	16	18	16	y	0.68	13	6	13	6	y	0.58	7	5	7	5	y	0.72	18	7	18	7	y	0.82	9	2	9	2	y	0.68	13	6	13	6	y	ENSMUSG00000002496.11	Tsc2	chr17	protein_coding	TSC complex subunit 2
known_NIR_7723	chr17	24849973	24850971	-	24849973	24850919	A5SS	ENSMUST00000226284.2	known	0.07	2	25	2	25	y	0.17	1	5	1	5	n	0.00	0	29	0	29	n	0.00	0	24	0	24	n	0.07	3	42	3	42	y	0.09	1	10	1	10	n	0.00	0	29	0	29	n	0.00	0	19	0	19	n	0.06	1	17	1	17	n	0.04	2	43	2	43	y	0.00	0	13	0	13	n	0.03	1	31	1	31	n	ENSMUSG00000002496.11	Tsc2	chr17	protein_coding	TSC complex subunit 2
known_NIR_7724	chr17	24851080	24851512	-	24851085	24851512	A3SS	ENSMUST00000226284.2	known	0.09	1	10	1	10	n	0.00	0	8	0	8	n	0.00	0	16	0	16	n	0.09	3	30	3	30	y	0.09	3	29	3	29	y	0.08	2	23	2	23	y	0.04	1	22	1	22	n	0.00	0	19	0	19	n	0.14	2	12	2	12	y	0.06	2	30	2	30	y	0.17	3	15	3	15	y	0.22	4	14	4	14	y	ENSMUSG00000002496.11	Tsc2	chr17	protein_coding	TSC complex subunit 2
known_NIR_7725	chr17	24851737	24852901	+	24851828	24852901	A5SS	ENSMUST00000234260.2	known	0.05	1	20	1	20	n	0.08	1	12	1	12	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.18	4	18	4	18	y	0.00	0	12	0	12	n	0.11	2	16	2	16	y	0.00	0	11	0	11	n	0.09	1	10	1	10	n	0.03	1	28	1	28	n	0.09	2	21	2	21	y	0.11	2	16	2	16	y	ENSMUSG00000041429.4	Nthl1	chr17	protein_coding	nth (endonuclease III)-like 1 (E.coli)
known_NIR_7726	chr17	24851828	24852901	+	24852832	24852901	A5SS	ENSMUST00000234308.2	known	1.00	20	0	20	0	n	1.00	12	0	12	0	n	0.82	9	2	9	2	y	0.94	15	1	15	1	n	1.00	18	0	18	0	n	0.80	12	3	12	3	y	1.00	16	0	16	0	n	0.92	11	1	11	1	n	1.00	10	0	10	0	n	0.93	28	2	28	2	y	0.95	21	1	21	1	n	0.94	16	1	16	1	n	ENSMUSG00000041429.4	Nthl1	chr17	protein_coding	nth (endonuclease III)-like 1 (E.coli)
known_NIR_7727	chr17	24859363	24860683	-	24859363;24859631	24859569;24860683	ES	ENSMUST00000019684.13	known	0.00	0	43.5	0	45;42	n	0.03	1	35.0	1	37;33	n	0.00	0	22.5	0	19;26	n	0.05	2	40.0	2	32;48	y	0.00	0	44.0	0	36;52	n	0.00	0	24.0	0	19;29	n	0.02	1	53.5	1	50;57	n	0.00	0	27.5	0	25;30	n	0.04	1	23.0	1	22;24	n	0.02	1	47.5	1	48;47	n	0.02	1	43.0	1	33;53	n	0.00	0	62.5	0	58;67	n	ENSMUSG00000002504.16	Slc9a3r2	chr17	protein_coding	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2
known_NIR_7728	chr17	24860726	24860793	-	24860726	24866501	A5SS	ENSMUST00000234912.2	known	1.00	36	0	36	0	n	1.00	36	0	36	0	n	1.00	30	0	30	0	n	1.00	44	0	44	0	n	1.00	57	0	57	0	n	1.00	28	0	28	0	n	0.95	62	3	62	3	y	1.00	23	0	23	0	n	1.00	25	0	25	0	n	1.00	56	0	56	0	n	1.00	51	0	51	0	n	1.00	68	0	68	0	n	ENSMUSG00000002504.16	Slc9a3r2	chr17	protein_coding	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2
known_NIR_7729	chr17	24860726	24866501	-	24860726;24861344	24860793;24866501	ES	ENSMUST00000235042.2	known	0.00	0	31.0	0	36;26	n	0.00	0	29.5	0	36;23	n	0.00	0	22.0	0	30;14	n	0.00	0	37.0	0	44;30	n	0.00	0	47.5	0	57;38	n	0.00	0	23.5	0	28;19	n	0.05	3	54.5	3	62;47	y	0.00	0	19.5	0	23;16	n	0.00	0	24.5	0	25;24	n	0.00	0	48.0	0	56;40	n	0.00	0	39.0	0	51;27	n	0.00	0	55.0	0	68;42	n	ENSMUSG00000002504.16	Slc9a3r2	chr17	protein_coding	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2
known_NIR_7730	chr17	24861344	24866501	-	24860726	24866501	A3SS	ENSMUST00000234912.2	known	1.00	26	0	26	0	n	1.00	23	0	23	0	n	1.00	14	0	14	0	n	1.00	30	0	30	0	n	1.00	38	0	38	0	n	1.00	19	0	19	0	n	0.94	47	3	47	3	y	1.00	16	0	16	0	n	1.00	24	0	24	0	n	1.00	40	0	40	0	n	1.00	27	0	27	0	n	1.00	42	0	42	0	n	ENSMUSG00000002504.16	Slc9a3r2	chr17	protein_coding	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2
known_NIR_7731	chr17	24861344	24866501	-	24861344	24863793	5pMXE	ENSMUST00000019684.13	known	0.93	26	2	26	2	y	0.92	23	2	23	2	y	0.67	14	7	14	7	y	0.97	30	1	30	1	n	0.95	38	2	38	2	y	0.95	19	1	19	1	n	0.90	47	5	47	5	y	0.94	16	1	16	1	n	1.00	24	0	24	0	n	1.00	40	0	40	0	n	0.96	27	1	27	1	n	0.91	42	4	42	4	y	ENSMUSG00000002504.16	Slc9a3r2	chr17	protein_coding	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2
known_NIR_7732	chr17	24897678	24898011	+	24897687	24898011	A5SS	ENSMUST00000234956.2	known	0.47	28	32	28	32	y	0.48	32	34	32	34	y	0.52	54	49	54	49	y	0.34	23	45	23	45	y	0.63	62	37	62	37	y	0.53	26	23	26	23	y	0.41	34	49	34	49	y	0.44	28	36	28	36	y	0.48	34	37	34	37	y	0.51	44	42	44	42	y	0.43	29	38	29	38	y	0.48	51	56	51	56	y	ENSMUSG00000041130.11	Zfp598	chr17	protein_coding	zinc finger protein 598
known_NIR_7733	chr17	24914391	24914805	-	24914424	24914805	A3SS	ENSMUST00000234197.2	known	0.06	8	127	8	127	y	0.11	14	111	14	111	y	0.12	20	140	20	140	y	0.09	13	129	13	129	y	0.09	15	159	15	159	y	0.08	10	121	10	121	y	0.08	13	148	13	148	y	0.08	8	92	8	92	y	0.16	20	108	20	108	y	0.06	11	166	11	166	y	0.07	8	107	8	107	y	0.06	9	130	9	130	y	ENSMUSG00000040888.11	Gfer	chr17	protein_coding	growth factor, augmenter of liver regeneration
known_NIR_7734	chr17	24918631	24919095	+	24918631;24918989	24918872;24919095	ES	ENSMUST00000019464.8	known	0.00	0	1.5	0	1;2	n	0.00	0	1.5	0	0;3	n	0.67	1	0.5	1	1;0	n	0.00	0	1.0	0	2;0	n	0.31	2	4.5	2	5;4	y	0.67	4	2.0	4	3;1	n	0.00	0	2.5	0	3;2	n	0.00	0	1.0	0	2;0	n	0.00	0	0.5	0	0;1	n	0.00	0	2.5	0	4;1	n	0.15	1	5.5	1	6;5	n	0.00	0	2.5	0	2;3	n	ENSMUSG00000019320.15	Noxo1	chr17	protein_coding	NADPH oxidase organizer 1
known_NIR_7735	chr17	24921042	24921119	-	24921021	24921119	A3SS	ENSMUST00000126319.8	known	0.14	5	30	5	30	y	0.07	3	40	3	40	y	0.06	3	49	3	49	y	0.15	5	29	5	29	y	0.21	8	31	8	31	y	0.11	4	31	4	31	y	0.15	4	22	4	22	y	0.07	2	26	2	26	y	0.17	5	24	5	24	y	0.22	13	46	13	46	y	0.06	3	46	3	46	y	0.09	3	29	3	29	y	ENSMUSG00000040688.17	Tbl3	chr17	protein_coding	transducin (beta)-like 3
known_NIR_7736	chr17	24940701	24940777	+	24940688	24940777	A5SS	ENSMUST00000170715.8	known	0.00	0	3820	0	3820	n	0.00	0	4304	0	4304	n	0.00	1	4201	1	4201	n	0.00	3	3077	3	3077	y	0.00	1	3923	1	3923	n	0.00	0	2203	0	2203	n	0.00	2	4659	2	4659	y	0.00	3	2189	3	2189	y	0.00	0	3209	0	3209	n	0.00	0	4885	0	4885	n	0.00	0	4766	0	4766	n	0.00	0	4517	0	4517	n	ENSMUSG00000044533.16	Rps2	chr17	protein_coding	ribosomal protein S2
known_NIR_7737	chr17	24941812	24943161	-	24941767	24943161	A3SS	ENSMUST00000129451.2	known	0.00	0	798	0	798	n	0.00	0	818	0	818	n	0.00	0	530	0	530	n	0.00	0	930	0	930	n	0.00	0	933	0	933	n	0.01	2	340	2	340	y	0.00	0	1063	0	1063	n	0.00	0	423	0	423	n	0.00	0	790	0	790	n	0.00	0	1223	0	1223	n	0.00	0	1055	0	1055	n	0.00	0	1055	0	1055	n	ENSMUSG00000040048.15	Ndufb10	chr17	protein_coding	NADH:ubiquinone oxidoreductase subunit B10
known_NIR_7738	chr17	24941963	24943161	-	24941767	24943161	A3SS	ENSMUST00000129451.2	known	0.00	0	798	0	798	n	0.00	1	818	1	818	n	0.00	0	530	0	530	n	0.00	0	930	0	930	n	0.00	0	933	0	933	n	0.00	0	340	0	340	n	0.00	3	1063	3	1063	y	0.00	0	423	0	423	n	0.00	0	790	0	790	n	0.00	0	1223	0	1223	n	0.00	1	1055	1	1055	n	0.00	1	1055	1	1055	n	ENSMUSG00000040048.15	Ndufb10	chr17	protein_coding	NADH:ubiquinone oxidoreductase subunit B10
known_NIR_7739	chr17	24972472	24976935	+	24975518	24976935	A5SS&ES	ENSMUST00000234340.2	known	0.62	5	3	5	3	n	0.44	4	5	4	5	n	1.00	1	0	1	0	n	0.80	4	1	4	1	n	1.00	4	0	4	0	n	0.75	3	1	3	1	n	0.33	4	8	4	8	y	1.00	3	0	3	0	n	0.78	7	2	7	2	n	1.00	1	0	1	0	n	0.40	2	3	2	3	n	0.71	5	2	5	2	n	ENSMUSG00000039628.10	Hs3st6	chr17	protein_coding	heparan sulfate (glucosamine) 3-O-sulfotransferase 6
known_NIR_7740	chr17	24972472;24975518	24975427;24976935	+	24972472	24976935	cassetteExon	ENSMUST00000044922.8	known	0.38	3.0	5	3;3	5	y	0.47	3.5	4	2;5	4	y	0.00	0.0	1	0;0	1	n	0.27	1.5	4	2;1	4	n	0.20	1.0	4	2;0	4	n	0.14	0.5	3	0;1	3	n	0.50	4.0	4	0;8	4	n	0.14	0.5	3	1;0	3	n	0.12	1.0	7	0;2	7	n	0.60	1.5	1	3;0	1	n	0.43	1.5	2	0;3	2	n	0.23	1.5	5	1;2	5	n	ENSMUSG00000039628.10	Hs3st6	chr17	protein_coding	heparan sulfate (glucosamine) 3-O-sulfotransferase 6
known_NIR_7741	chr17	25069642	25071705	+	25059255	25071705	A5SS	ENSMUST00000164251.8	known	1.00	673	1	673	1	n	1.00	512	2	512	2	y	0.98	267	5	267	5	y	0.99	713	4	713	4	y	1.00	854	4	854	4	y	1.00	246	0	246	0	n	1.00	752	3	752	3	y	1.00	291	0	291	0	n	1.00	649	2	649	2	y	1.00	888	2	888	2	y	0.99	771	5	771	5	y	0.99	860	7	860	7	y	ENSMUSG00000024158.18	Hagh	chr17	protein_coding	hydroxyacyl glutathione hydrolase
known_NIR_7742	chr17	25069729	25071705	+	25059255	25071705	A5SS	ENSMUST00000164251.8	known	0.50	1	1	1	1	n	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.33	2	4	2	4	n	0.56	5	4	5	4	n	-	-	-	-	-	-	0.62	5	3	5	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.75	6	2	6	2	n	0.38	3	5	3	5	n	0.36	4	7	4	7	y	ENSMUSG00000024158.18	Hagh	chr17	protein_coding	hydroxyacyl glutathione hydrolase
known_NIR_7743	chr17	25069729	25071705	+	25069642	25071705	A5SS	ENSMUST00000118788.8	known	0.00	1	673	1	673	n	0.00	1	512	1	512	n	0.00	0	267	0	267	n	0.00	2	713	2	713	y	0.01	5	854	5	854	y	0.00	0	246	0	246	n	0.01	5	752	5	752	y	0.00	0	291	0	291	n	0.00	0	649	0	649	n	0.01	6	888	6	888	y	0.00	3	771	3	771	y	0.00	4	860	4	860	y	ENSMUSG00000024158.18	Hagh	chr17	protein_coding	hydroxyacyl glutathione hydrolase
known_NIR_7744	chr17	25070057	25071705	+	25069642	25071705	A5SS	ENSMUST00000118788.8	known	0.00	0	673	0	673	n	0.00	2	512	2	512	y	0.00	0	267	0	267	n	0.00	0	713	0	713	n	0.00	0	854	0	854	n	0.00	0	246	0	246	n	0.00	0	752	0	752	n	0.00	0	291	0	291	n	0.00	0	649	0	649	n	0.00	0	888	0	888	n	0.00	0	771	0	771	n	0.00	0	860	0	860	n	ENSMUSG00000024158.18	Hagh	chr17	protein_coding	hydroxyacyl glutathione hydrolase
known_NIR_7745	chr17	25072670	25073055	+	25072670	25075612	A3SS	ENSMUST00000164251.8	known	0.01	13	1020	13	1020	y	0.02	17	866	17	866	y	0.03	14	412	14	412	y	0.01	13	1037	13	1037	y	0.02	26	1175	26	1175	y	0.03	9	305	9	305	y	0.02	25	1147	25	1147	y	0.03	13	460	13	460	y	0.02	20	850	20	850	y	0.02	27	1368	27	1368	y	0.02	23	1152	23	1152	y	0.02	24	1398	24	1398	y	ENSMUSG00000024158.18	Hagh	chr17	protein_coding	hydroxyacyl glutathione hydrolase
known_NIR_7746	chr17	25077283	25079920	+	25076598	25079920	A5SS	ENSMUST00000164251.8	known	0.00	3	1318	3	1318	y	0.00	3	1177	3	1177	y	0.00	0	506	0	506	n	0.00	3	1459	3	1459	y	0.01	8	1418	8	1418	y	0.00	0	332	0	332	n	0.00	4	1599	4	1599	y	0.00	0	548	0	548	n	0.01	15	1193	15	1193	y	0.01	20	1819	20	1819	y	0.02	29	1565	29	1565	y	0.01	19	1665	19	1665	y	ENSMUSG00000024158.18	Hagh	chr17	protein_coding	hydroxyacyl glutathione hydrolase
known_NIR_7747	chr17	25097377	25098927	+	25096896	25098927	A5SS	ENSMUST00000234862.2	known	0.38	3	5	3	5	n	0.00	0	6	0	6	n	1.00	1	0	1	0	n	0.06	1	16	1	16	n	0.08	1	11	1	11	n	1.00	1	0	1	0	n	0.00	0	12	0	12	n	0.11	1	8	1	8	n	0.08	1	11	1	11	n	0.14	2	12	2	12	y	0.10	1	9	1	9	n	0.27	3	8	3	8	y	ENSMUSG00000046070.10	Igfals	chr17	protein_coding	insulin-like growth factor binding protein, acid labile subunit
known_NIR_7748	chr17	25097798	25098927	+	25096896	25098927	A5SS	ENSMUST00000234862.2	known	0.97	160	5	160	5	y	0.94	102	6	102	6	y	1.00	15	0	15	0	n	0.91	170	16	170	16	y	0.95	192	11	192	11	y	1.00	12	0	12	0	n	0.92	139	12	139	12	y	0.76	26	8	26	8	y	0.94	169	11	169	11	y	0.94	189	12	189	12	y	0.95	167	9	167	9	y	0.96	210	8	210	8	y	ENSMUSG00000046070.10	Igfals	chr17	protein_coding	insulin-like growth factor binding protein, acid labile subunit
known_NIR_7749	chr17	25097798	25098927	+	25097377	25098927	A5SS	ENSMUST00000234188.2	known	0.98	160	3	160	3	y	1.00	102	0	102	0	n	0.94	15	1	15	1	n	0.99	170	1	170	1	n	0.99	192	1	192	1	n	0.92	12	1	12	1	n	1.00	139	0	139	0	n	0.96	26	1	26	1	n	0.99	169	1	169	1	n	0.99	189	2	189	2	y	0.99	167	1	167	1	n	0.99	210	3	210	3	y	ENSMUSG00000046070.10	Igfals	chr17	protein_coding	insulin-like growth factor binding protein, acid labile subunit
known_NIR_7750	chr17	25097798	25098989	+	25097798	25098927	A3SS	ENSMUST00000050714.8	known	0.10	17	160	17	160	y	0.05	5	102	5	102	y	0.12	2	15	2	15	y	0.04	8	170	8	170	y	0.05	11	192	11	192	y	0.00	0	12	0	12	n	0.09	13	139	13	139	y	0.07	2	26	2	26	y	0.06	10	169	10	169	y	0.06	13	189	13	189	y	0.03	5	167	5	167	y	0.05	11	210	11	210	y	ENSMUSG00000046070.10	Igfals	chr17	protein_coding	insulin-like growth factor binding protein, acid labile subunit
known_NIR_7751	chr17	25102383	25102780	-	25102288	25102780	A3SS	ENSMUST00000234579.2	known	0.01	1	137	1	137	n	0.03	3	112	3	112	y	0.00	0	108	0	108	n	0.01	1	110	1	110	n	0.00	0	133	0	133	n	0.00	0	67	0	67	n	0.01	2	134	2	134	y	0.00	0	86	0	86	n	0.00	0	95	0	95	n	0.00	0	111	0	111	n	0.01	1	114	1	114	n	0.02	3	135	3	135	y	ENSMUSG00000039183.7	Nubp2	chr17	protein_coding	nucleotide binding protein 2
known_NIR_7752	chr17	25103488	25104393	-	25103529	25104393	A3SS	ENSMUST00000234579.2	known	0.00	0	106	0	106	n	0.00	0	102	0	102	n	0.00	0	131	0	131	n	0.04	4	106	4	106	y	0.00	0	146	0	146	n	0.00	0	84	0	84	n	0.00	0	134	0	134	n	0.00	0	76	0	76	n	0.00	0	95	0	95	n	0.00	0	122	0	122	n	0.03	3	99	3	99	y	0.00	0	125	0	125	n	ENSMUSG00000039183.7	Nubp2	chr17	protein_coding	nucleotide binding protein 2
known_NIR_7753	chr17	25103529	25104693	-	25103529	25104393	5pMXE	ENSMUST00000234598.2	known	0.02	2	106	2	106	y	0.01	1	102	1	102	n	0.00	0	131	0	131	n	0.03	3	106	3	106	y	0.02	3	146	3	146	y	0.01	1	84	1	84	n	0.01	2	134	2	134	y	0.00	0	76	0	76	n	0.00	0	95	0	95	n	0.01	1	122	1	122	n	0.00	0	99	0	99	n	0.02	3	125	3	125	y	ENSMUSG00000039183.7	Nubp2	chr17	protein_coding	nucleotide binding protein 2
known_NIR_7754	chr17	25103529	25104693	-	25103529;25104591	25104393;25104693	ES	ENSMUST00000234579.2	known	0.02	2	90.0	2	106;74	y	0.01	1	88.5	1	102;75	n	0.00	0	116.0	0	131;101	n	0.03	3	103.5	3	106;101	y	0.02	3	144.5	3	146;143	y	0.01	1	79.0	1	84;74	n	0.02	2	125.5	2	134;117	y	0.00	0	73.0	0	76;70	n	0.00	0	88.5	0	95;82	n	0.01	1	115.0	1	122;108	n	0.00	0	92.5	0	99;86	n	0.02	3	117.5	3	125;110	y	ENSMUSG00000039183.7	Nubp2	chr17	protein_coding	nucleotide binding protein 2
known_NIR_7755	chr17	25103529	25104693	-	25104591	25104693	A3SS&ES	ENSMUST00000234674.2	known	0.03	2	74	2	74	y	0.01	1	75	1	75	n	0.00	0	101	0	101	n	0.03	3	101	3	101	y	0.02	3	143	3	143	y	0.01	1	74	1	74	n	0.02	2	117	2	117	y	0.00	0	70	0	70	n	0.00	0	82	0	82	n	0.01	1	108	1	108	n	0.00	0	86	0	86	n	0.03	3	110	3	110	y	ENSMUSG00000039183.7	Nubp2	chr17	protein_coding	nucleotide binding protein 2
known_NIR_7756	chr17	25103529;25104608	25104393;25104693	-	25103529	25104693	cassetteExon	ENSMUST00000234261.2	known	0.96	53.5	2	106;1	2	n	0.98	51.0	1	102;0	1	n	1.00	66.0	0	131;1	0	n	0.95	55.0	3	106;4	3	y	0.96	75.0	3	146;4	3	y	0.98	44.0	1	84;4	1	n	0.97	68.5	2	134;3	2	y	1.00	38.5	0	76;1	0	n	1.00	47.5	0	95;0	0	n	0.98	63.0	1	122;4	1	n	1.00	50.5	0	99;2	0	n	0.96	64.0	3	125;3	3	y	ENSMUSG00000039183.7	Nubp2	chr17	protein_coding	nucleotide binding protein 2
known_NIR_7757	chr17	25103560	25104393	-	25103529	25104393	A3SS	ENSMUST00000234579.2	known	0.00	0	106	0	106	n	0.00	0	102	0	102	n	0.01	1	131	1	131	n	0.00	0	106	0	106	n	0.02	3	146	3	146	y	0.03	3	84	3	84	y	0.01	2	134	2	134	y	0.00	0	76	0	76	n	0.01	1	95	1	95	n	0.02	3	122	3	122	y	0.01	1	99	1	99	n	0.00	0	125	0	125	n	ENSMUSG00000039183.7	Nubp2	chr17	protein_coding	nucleotide binding protein 2
known_NIR_7758	chr17	25104608	25104693	-	25104591	25104693	A3SS	ENSMUST00000234579.2	known	0.01	1	74	1	74	n	0.00	0	75	0	75	n	0.01	1	101	1	101	n	0.04	4	101	4	101	y	0.03	4	143	4	143	y	0.05	4	74	4	74	y	0.03	3	117	3	117	y	0.01	1	70	1	70	n	0.00	0	82	0	82	n	0.04	4	108	4	108	y	0.02	2	86	2	86	y	0.03	3	110	3	110	y	ENSMUSG00000039183.7	Nubp2	chr17	protein_coding	nucleotide binding protein 2
known_NIR_7759	chr17	25104811	25105253	-	25104837	25105253	A3SS	ENSMUST00000234579.2	known	0.95	38	2	38	2	y	1.00	40	0	40	0	n	0.96	51	2	51	2	y	1.00	49	0	49	0	n	1.00	67	0	67	0	n	1.00	31	0	31	0	n	0.96	47	2	47	2	y	1.00	29	0	29	0	n	0.97	33	1	33	1	n	1.00	48	0	48	0	n	1.00	42	0	42	0	n	0.96	46	2	46	2	y	ENSMUSG00000039183.7	Nubp2	chr17	protein_coding	nucleotide binding protein 2
known_NIR_7760	chr17	25104811	25105265	-	25104811	25105253	A5SS	ENSMUST00000234098.2	known	0.03	1	38	1	38	n	0.09	4	40	4	40	y	0.00	0	51	0	51	n	0.00	0	49	0	49	n	0.03	2	67	2	67	y	0.09	3	31	3	31	y	0.02	1	47	1	47	n	0.00	0	29	0	29	n	0.00	0	33	0	33	n	0.00	0	48	0	48	n	0.00	0	42	0	42	n	0.00	0	46	0	46	n	ENSMUSG00000039183.7	Nubp2	chr17	protein_coding	nucleotide binding protein 2
known_NIR_7761	chr17	25106079	25106754	+	25105734	25106754	A5SS	ENSMUST00000117890.8	known	0.88	37	5	37	5	y	0.80	24	6	24	6	y	0.74	55	19	55	19	y	0.73	24	9	24	9	y	0.84	62	12	62	12	y	0.81	30	7	30	7	y	0.89	48	6	48	6	y	0.86	31	5	31	5	y	0.96	27	1	27	1	n	0.86	30	5	30	5	y	0.74	17	6	17	6	y	0.83	34	7	34	7	y	ENSMUSG00000024160.17	Spsb3	chr17	protein_coding	splA/ryanodine receptor domain and SOCS box containing 3
known_NIR_7762	chr17	25106562	25106754	+	25106079	25106754	A5SS	ENSMUST00000168265.8	known	0.00	0	37	0	37	n	0.00	0	24	0	24	n	0.00	0	55	0	55	n	0.00	0	24	0	24	n	0.00	0	62	0	62	n	0.00	0	30	0	30	n	0.04	2	48	2	48	y	0.00	0	31	0	31	n	0.07	2	27	2	27	y	0.00	0	30	0	30	n	0.00	0	17	0	17	n	0.00	0	34	0	34	n	ENSMUSG00000024160.17	Spsb3	chr17	protein_coding	splA/ryanodine receptor domain and SOCS box containing 3
known_NIR_7763	chr17	25106891;25108142	25108060;25109257	+	25106891	25109257	cassetteExon	ENSMUST00000117890.8	known	0.04	2.5	58	2;3	58	y	0.03	1.5	46	3;0	46	n	0.03	3.0	91	4;2	91	y	0.04	1.5	40	2;1	40	n	0.00	0.0	72	0;0	72	n	0.06	2.5	41	3;2	41	y	0.01	0.5	62	0;1	62	n	0.02	1.0	47	2;0	47	n	0.03	1.0	36	0;2	36	n	0.03	1.0	38	0;2	38	n	0.00	0.0	46	0;0	46	n	0.05	3.5	62	6;1	62	n	ENSMUSG00000024160.17	Spsb3	chr17	protein_coding	splA/ryanodine receptor domain and SOCS box containing 3
known_NIR_7764	chr17	25109434	25109526	+	25109434	25109542	A3SS	ENSMUST00000117890.8	known	0.00	0	38	0	38	n	0.00	0	39	0	39	n	0.00	0	88	0	88	n	0.00	0	36	0	36	n	0.03	2	72	2	72	y	0.00	0	41	0	41	n	0.00	0	55	0	55	n	0.00	0	42	0	42	n	0.00	0	33	0	33	n	0.09	3	32	3	32	y	0.00	0	36	0	36	n	0.00	0	36	0	36	n	ENSMUSG00000024160.17	Spsb3	chr17	protein_coding	splA/ryanodine receptor domain and SOCS box containing 3
known_NIR_7765	chr17	25110110	25110279	+	25110110	25110334	A3SS	ENSMUST00000117890.8	known	0.00	0	50	0	50	n	0.14	6	37	6	37	y	0.11	10	81	10	81	y	0.00	0	16	0	16	n	0.07	6	82	6	82	y	0.10	6	52	6	52	y	0.00	0	50	0	50	n	0.18	9	42	9	42	y	0.15	9	50	9	50	y	0.11	5	39	5	39	y	0.11	6	47	6	47	y	0.07	4	51	4	51	y	ENSMUSG00000024160.17	Spsb3	chr17	protein_coding	splA/ryanodine receptor domain and SOCS box containing 3
known_NIR_7766	chr17	25111657	25111729	-	25111657	25113105	A5SS	ENSMUST00000156659.8	known	1.00	38	0	38	0	n	1.00	44	0	44	0	n	1.00	32	0	32	0	n	1.00	38	0	38	0	n	0.96	49	2	49	2	y	1.00	25	0	25	0	n	1.00	29	0	29	0	n	1.00	30	0	30	0	n	1.00	38	0	38	0	n	1.00	30	0	30	0	n	1.00	31	0	31	0	n	1.00	29	0	29	0	n	ENSMUSG00000073436.12	Eme2	chr17	protein_coding	essential meiotic structure-specific endonuclease subunit 2
known_NIR_7767	chr17	25111657	25113105	-	25112616	25113105	A3SS&ES	ENSMUST00000119848.8	known	0.00	0	37	0	37	n	0.00	0	40	0	40	n	0.00	0	43	0	43	n	0.00	0	26	0	26	n	0.04	2	47	2	47	y	0.00	0	34	0	34	n	0.00	0	48	0	48	n	0.00	0	35	0	35	n	0.00	0	25	0	25	n	0.00	0	42	0	42	n	0.00	0	49	0	49	n	0.00	0	29	0	29	n	ENSMUSG00000073436.12	Eme2	chr17	protein_coding	essential meiotic structure-specific endonuclease subunit 2
known_NIR_7768	chr17	25111941	25112013	-	25111918	25112013	A3SS	ENSMUST00000119848.8	known	0.00	0	47	0	47	n	0.00	0	52	0	52	n	0.11	4	32	4	32	y	0.00	0	38	0	38	n	0.01	1	76	1	76	n	0.00	0	38	0	38	n	0.00	0	51	0	51	n	0.00	0	34	0	34	n	0.00	0	36	0	36	n	0.04	2	44	2	44	y	0.00	0	34	0	34	n	0.03	1	38	1	38	n	ENSMUSG00000073436.12	Eme2	chr17	protein_coding	essential meiotic structure-specific endonuclease subunit 2
known_NIR_7769	chr17	25115533	25115609	+	25115533	25115602	A3SS	ENSMUST00000024978.7	known	0.10	6	55	6	55	y	0.00	0	49	0	49	n	0.00	0	31	0	31	n	0.07	5	71	5	71	y	0.04	3	74	3	74	y	0.00	0	13	0	13	n	0.06	4	61	4	61	y	0.00	0	39	0	39	n	0.06	4	68	4	68	y	0.10	8	73	8	73	y	0.12	10	72	10	72	y	0.00	0	91	0	91	n	ENSMUSG00000073435.11	Nme3	chr17	protein_coding	NME/NM23 nucleoside diphosphate kinase 3
known_NIR_7770	chr17	25124272	25125148	-	25124272	25125121	A5SS	ENSMUST00000146923.8	known	0.07	2	25	2	25	y	0.19	5	22	5	22	y	0.21	8	30	8	30	y	0.21	5	19	5	19	y	0.00	0	35	0	35	n	0.10	3	27	3	27	y	0.14	6	37	6	37	y	0.13	4	27	4	27	y	0.18	3	14	3	14	y	0.11	3	24	3	24	y	0.16	3	16	3	16	y	0.05	1	18	1	18	n	ENSMUSG00000024163.18	Mapk8ip3	chr17	protein_coding	mitogen-activated protein kinase 8 interacting protein 3
known_NIR_7771	chr17	25126360	25128124	-	25126360	25127385	A5SS&ES	ENSMUST00000115229.10	known	0.96	23	1	23	1	n	1.00	13	0	13	0	n	0.90	26	3	26	3	y	0.96	24	1	24	1	n	1.00	29	0	29	0	n	0.86	12	2	12	2	y	0.96	22	1	22	1	n	0.92	11	1	11	1	n	1.00	13	0	13	0	n	0.92	12	1	12	1	n	1.00	8	0	8	0	n	0.88	7	1	7	1	n	ENSMUSG00000024163.18	Mapk8ip3	chr17	protein_coding	mitogen-activated protein kinase 8 interacting protein 3
known_NIR_7772	chr17	25133679	25135478	-	25133679	25137062	A5SS	ENSMUST00000117509.8	known	0.89	8	1	8	1	n	1.00	8	0	8	0	n	0.89	17	2	17	2	y	0.78	7	2	7	2	n	0.89	16	2	16	2	y	1.00	17	0	17	0	n	0.85	11	2	11	2	y	0.79	11	3	11	3	y	0.86	6	1	6	1	n	0.79	11	3	11	3	y	0.50	3	3	3	3	n	0.67	6	3	6	3	n	ENSMUSG00000024163.18	Mapk8ip3	chr17	protein_coding	mitogen-activated protein kinase 8 interacting protein 3
known_NIR_7773	chr17	25137110	25142790	-	25137113	25142790	A3SS	ENSMUST00000146923.8	known	0.10	1	9	1	9	n	1.00	1	0	1	0	n	0.18	2	9	2	9	y	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.25	2	6	2	6	n	0.19	3	13	3	13	y	0.07	1	13	1	13	n	0.10	1	9	1	9	n	0.10	1	9	1	9	n	0.12	1	7	1	7	n	0.29	2	5	2	5	n	ENSMUSG00000024163.18	Mapk8ip3	chr17	protein_coding	mitogen-activated protein kinase 8 interacting protein 3
known_NIR_7774	chr17	25137110	25142790	-	25139469	25142790	A3SS&ES	ENSMUST00000115229.10	known	0.33	1	2	1	2	n	0.33	1	2	1	2	n	0.20	2	8	2	8	y	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.50	2	2	2	2	n	0.75	3	1	3	1	n	0.20	1	4	1	4	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	1.00	1	0	1	0	n	0.33	2	4	2	4	n	ENSMUSG00000024163.18	Mapk8ip3	chr17	protein_coding	mitogen-activated protein kinase 8 interacting protein 3
known_NIR_7775	chr17	25137113;25139469	25139446;25142790	-	25137113	25142790	cassetteExon	ENSMUST00000146923.8	known	0.10	1.0	9	0;2	9	n	1.00	2.5	0	3;2	0	n	0.44	7.0	9	6;8	9	y	0.14	1.5	9	2;1	9	n	0.35	5.5	10	5;6	10	y	0.20	1.5	6	1;2	6	n	0.10	1.5	13	2;1	13	n	0.24	4.0	13	4;4	13	y	0.00	0.0	9	0;0	9	n	0.22	2.5	9	3;2	9	y	0.00	0.0	7	0;0	7	n	0.52	5.5	5	7;4	5	y	ENSMUSG00000024163.18	Mapk8ip3	chr17	protein_coding	mitogen-activated protein kinase 8 interacting protein 3
known_NIR_7776	chr17	25175140	25179466	-	25175140	25179542	A5SS	ENSMUST00000233067.2	known	0.00	0	35	0	35	n	0.00	0	32	0	32	n	0.03	3	93	3	93	y	0.00	0	43	0	43	n	0.00	0	104	0	104	n	0.04	3	65	3	65	y	0.00	0	46	0	46	n	0.00	0	62	0	62	n	0.00	0	31	0	31	n	0.00	0	42	0	42	n	0.00	0	47	0	47	n	0.02	1	47	1	47	n	ENSMUSG00000024165.10	Jpt2	chr17	protein_coding	Jupiter microtubule associated homolog 2
known_NIR_7777	chr17	25355737	25363404	+	25352588	25363404	A5SS	ENSMUST00000162862.3	known	0.00	0	18	0	18	n	0.11	2	16	2	16	y	0.00	0	50	0	50	n	0.00	0	33	0	33	n	0.03	1	38	1	38	n	0.00	0	24	0	24	n	0.00	0	43	0	43	n	0.00	0	26	0	26	n	0.00	0	27	0	27	n	0.00	0	34	0	34	n	0.00	0	23	0	23	n	0.00	0	34	0	34	n	ENSMUSG00000036636.11	Clcn7	chr17	protein_coding	chloride channel, voltage-sensitive 7
known_NIR_7778	chr17	25370728	25371322	+	25370732	25371322	A5SS	ENSMUST00000162862.3	known	0.00	0	15	0	15	n	0.00	0	23	0	23	n	0.00	0	58	0	58	n	0.00	0	31	0	31	n	0.00	0	45	0	45	n	0.00	0	18	0	18	n	0.00	0	46	0	46	n	0.03	1	29	1	29	n	0.10	2	18	2	18	y	0.00	0	53	0	53	n	0.00	0	33	0	33	n	0.00	0	31	0	31	n	ENSMUSG00000036636.11	Clcn7	chr17	protein_coding	chloride channel, voltage-sensitive 7
known_NIR_7779	chr17	25372128	25372706	+	25372128	25372535	A3SS	ENSMUST00000162862.3	known	0.97	35	1	35	1	n	0.93	28	2	28	2	y	1.00	52	0	52	0	n	1.00	47	0	47	0	n	1.00	43	0	43	0	n	0.95	21	1	21	1	n	1.00	40	0	40	0	n	1.00	24	0	24	0	n	1.00	24	0	24	0	n	1.00	53	0	53	0	n	1.00	37	0	37	0	n	1.00	32	0	32	0	n	ENSMUSG00000036636.11	Clcn7	chr17	protein_coding	chloride channel, voltage-sensitive 7
known_NIR_7780	chr17	25441696	25447557	+	25437729	25447557	A5SS	ENSMUST00000039734.12	known	0.76	13	4	13	4	y	0.73	8	3	8	3	y	0.55	12	10	12	10	y	0.92	23	2	23	2	y	0.65	15	8	15	8	y	0.86	6	1	6	1	n	0.89	8	1	8	1	n	0.55	6	5	6	5	y	0.65	13	7	13	7	y	0.77	27	8	27	8	y	0.75	9	3	9	3	y	0.50	11	11	11	11	y	ENSMUSG00000015127.15	Unkl	chr17	protein_coding	unkempt family like zinc finger
known_NIR_7781	chr17	25441879	25447557	+	25437729	25447557	A5SS	ENSMUST00000039734.12	known	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.20	2	8	2	8	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.17	1	5	1	5	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	ENSMUSG00000015127.15	Unkl	chr17	protein_coding	unkempt family like zinc finger
known_NIR_7782	chr17	25441879	25447557	+	25441696	25447557	A5SS	ENSMUST00000162498.8	known	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	23	0	23	n	0.12	2	15	2	15	y	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.14	1	6	1	6	n	0.00	0	13	0	13	n	0.00	0	27	0	27	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	ENSMUSG00000015127.15	Unkl	chr17	protein_coding	unkempt family like zinc finger
known_NIR_7783	chr17	25447640	25449181	+	25447640	25448213	3pMXE	ENSMUST00000162498.8	known	0.54	13	11	13	11	y	0.67	8	4	8	4	y	0.45	9	11	9	11	y	0.68	17	8	17	8	y	0.74	26	9	26	9	y	0.39	7	11	7	11	y	0.53	9	8	9	8	y	0.43	6	8	6	8	y	0.56	9	7	9	7	y	0.58	19	14	19	14	y	0.67	10	5	10	5	y	0.72	18	7	18	7	y	ENSMUSG00000015127.15	Unkl	chr17	protein_coding	unkempt family like zinc finger
known_NIR_7784	chr17	25447640	25449181	+	25447640;25448440	25448213;25449181	ES	ENSMUST00000039734.12	known	0.60	13	8.5	13	11;6	y	0.53	8	7.0	8	4;10	y	0.30	9	21.5	9	11;32	y	0.58	17	12.5	17	8;17	y	0.63	26	15.0	26	9;21	y	0.41	7	10.0	7	11;9	y	0.50	9	9.0	9	8;10	y	0.39	6	9.5	6	8;11	y	0.56	9	7.0	9	7;7	y	0.56	19	15.0	19	14;16	y	0.56	10	8.0	10	5;11	y	0.64	18	10.0	18	7;13	y	ENSMUSG00000015127.15	Unkl	chr17	protein_coding	unkempt family like zinc finger
known_NIR_7785	chr17	25488453	25491512	-	25488453	25493136	A5SS	ENSMUST00000173713.8	known	0.30	11	26	11	26	y	0.22	6	21	6	21	y	0.03	1	35	1	35	n	0.13	7	45	7	45	y	0.14	9	55	9	55	y	0.17	3	15	3	15	y	0.19	8	35	8	35	y	0.15	4	23	4	23	y	0.08	4	47	4	47	y	0.17	15	73	15	73	y	0.10	4	38	4	38	y	0.09	4	42	4	42	y	ENSMUSG00000015120.16	Ube2i	chr17	protein_coding	ubiquitin-conjugating enzyme E2I
known_NIR_7786	chr17	25488453	25491512	-	25488453	25493147	A5SS	ENSMUST00000049911.16	known	0.69	11	5	11	5	y	0.46	6	7	6	7	y	0.10	1	9	1	9	n	0.37	7	12	7	12	y	0.45	9	11	9	11	y	0.60	3	2	3	2	n	0.50	8	8	8	8	y	0.57	4	3	4	3	n	0.33	4	8	4	8	y	0.52	15	14	15	14	y	0.33	4	8	4	8	y	0.27	4	11	4	11	y	ENSMUSG00000015120.16	Ube2i	chr17	protein_coding	ubiquitin-conjugating enzyme E2I
known_NIR_7787	chr17	25488453	25491512	-	25488453	25493497	A5SS	ENSMUST00000174001.8	known	1.00	11	0	11	0	n	1.00	6	0	6	0	n	1.00	1	0	1	0	n	1.00	7	0	7	0	n	0.82	9	2	9	2	y	1.00	3	0	3	0	n	1.00	8	0	8	0	n	1.00	4	0	4	0	n	1.00	4	0	4	0	n	1.00	15	0	15	0	n	1.00	4	0	4	0	n	1.00	4	0	4	0	n	ENSMUSG00000015120.16	Ube2i	chr17	protein_coding	ubiquitin-conjugating enzyme E2I
known_NIR_7788	chr17	25488453	25492295	-	25488453	25491512	A5SS&ES	ENSMUST00000172520.2	known	0.88	77	11	77	11	y	0.88	46	6	46	6	y	0.99	74	1	74	1	n	0.92	82	7	82	7	y	0.91	89	9	89	9	y	0.94	45	3	45	3	y	0.92	90	8	90	8	y	0.93	51	4	51	4	y	0.92	47	4	47	4	y	0.87	97	15	97	15	y	0.93	52	4	52	4	y	0.95	75	4	75	4	y	ENSMUSG00000015120.16	Ube2i	chr17	protein_coding	ubiquitin-conjugating enzyme E2I
known_NIR_7789	chr17	25488453	25492295	-	25488453	25493136	A5SS	ENSMUST00000173713.8	known	0.75	77	26	77	26	y	0.69	46	21	46	21	y	0.68	74	35	74	35	y	0.65	82	45	82	45	y	0.62	89	55	89	55	y	0.75	45	15	45	15	y	0.72	90	35	90	35	y	0.69	51	23	51	23	y	0.50	47	47	47	47	y	0.57	97	73	97	73	y	0.58	52	38	52	38	y	0.64	75	42	75	42	y	ENSMUSG00000015120.16	Ube2i	chr17	protein_coding	ubiquitin-conjugating enzyme E2I
known_NIR_7790	chr17	25488453	25492295	-	25488453	25493147	A5SS	ENSMUST00000049911.16	known	0.94	77	5	77	5	y	0.87	46	7	46	7	y	0.89	74	9	74	9	y	0.87	82	12	82	12	y	0.89	89	11	89	11	y	0.96	45	2	45	2	y	0.92	90	8	90	8	y	0.94	51	3	51	3	y	0.85	47	8	47	8	y	0.87	97	14	97	14	y	0.87	52	8	52	8	y	0.87	75	11	75	11	y	ENSMUSG00000015120.16	Ube2i	chr17	protein_coding	ubiquitin-conjugating enzyme E2I
known_NIR_7791	chr17	25488453	25492295	-	25488453;25491739	25491512;25492295	ES	ENSMUST00000173084.8	known	0.93	77	6.0	77	11;1	n	0.91	46	4.5	46	6;3	y	0.99	74	0.5	74	1;0	n	0.94	82	5.5	82	7;4	y	0.95	89	4.5	89	9;0	n	0.96	45	2.0	45	3;1	n	0.92	90	7.5	90	8;7	y	0.96	51	2.0	51	4;0	n	0.96	47	2.0	47	4;0	n	0.91	97	9.5	97	15;4	y	0.95	52	3.0	52	4;2	y	0.97	75	2.5	75	4;1	n	ENSMUSG00000015120.16	Ube2i	chr17	protein_coding	ubiquitin-conjugating enzyme E2I
known_NIR_7792	chr17	25488453	25492456	-	25488453	25491512	A5SS&ES	ENSMUST00000172618.8	known	0.39	7	11	7	11	y	0.14	1	6	1	6	n	0.80	4	1	4	1	n	0.22	2	7	2	7	n	0.55	11	9	11	9	y	0.57	4	3	4	3	n	0.50	8	8	8	8	y	0.50	4	4	4	4	n	0.33	2	4	2	4	n	0.12	2	15	2	15	y	0.50	4	4	4	4	n	0.64	7	4	7	4	y	ENSMUSG00000015120.16	Ube2i	chr17	protein_coding	ubiquitin-conjugating enzyme E2I
known_NIR_7793	chr17	25488453	25492456	-	25488453	25492295	A5SS	ENSMUST00000174031.8	known	0.08	7	77	7	77	y	0.02	1	46	1	46	n	0.05	4	74	4	74	y	0.02	2	82	2	82	y	0.11	11	89	11	89	y	0.08	4	45	4	45	y	0.08	8	90	8	90	y	0.07	4	51	4	51	y	0.04	2	47	2	47	y	0.02	2	97	2	97	y	0.07	4	52	4	52	y	0.09	7	75	7	75	y	ENSMUSG00000015120.16	Ube2i	chr17	protein_coding	ubiquitin-conjugating enzyme E2I
known_NIR_7794	chr17	25488453	25492456	-	25488453	25493136	A5SS	ENSMUST00000173713.8	known	0.21	7	26	7	26	y	0.05	1	21	1	21	n	0.10	4	35	4	35	y	0.04	2	45	2	45	y	0.17	11	55	11	55	y	0.21	4	15	4	15	y	0.19	8	35	8	35	y	0.15	4	23	4	23	y	0.04	2	47	2	47	y	0.03	2	73	2	73	y	0.10	4	38	4	38	y	0.14	7	42	7	42	y	ENSMUSG00000015120.16	Ube2i	chr17	protein_coding	ubiquitin-conjugating enzyme E2I
known_NIR_7795	chr17	25488453	25492456	-	25488453	25493147	A5SS	ENSMUST00000049911.16	known	0.58	7	5	7	5	y	0.12	1	7	1	7	n	0.31	4	9	4	9	y	0.14	2	12	2	12	y	0.50	11	11	11	11	y	0.67	4	2	4	2	n	0.50	8	8	8	8	y	0.57	4	3	4	3	n	0.20	2	8	2	8	y	0.12	2	14	2	14	y	0.33	4	8	4	8	y	0.39	7	11	7	11	y	ENSMUSG00000015120.16	Ube2i	chr17	protein_coding	ubiquitin-conjugating enzyme E2I
known_NIR_7796	chr17	25488453	25492456	-	25488453	25493497	A5SS	ENSMUST00000174001.8	known	1.00	7	0	7	0	n	1.00	1	0	1	0	n	1.00	4	0	4	0	n	1.00	2	0	2	0	n	0.85	11	2	11	2	y	1.00	4	0	4	0	n	1.00	8	0	8	0	n	1.00	4	0	4	0	n	1.00	2	0	2	0	n	1.00	2	0	2	0	n	1.00	4	0	4	0	n	1.00	7	0	7	0	n	ENSMUSG00000015120.16	Ube2i	chr17	protein_coding	ubiquitin-conjugating enzyme E2I
known_NIR_7797	chr17	25488453	25493136	-	25488453	25493147	A5SS	ENSMUST00000049911.16	known	0.84	26	5	26	5	y	0.75	21	7	21	7	y	0.80	35	9	35	9	y	0.79	45	12	45	12	y	0.83	55	11	55	11	y	0.88	15	2	15	2	y	0.81	35	8	35	8	y	0.88	23	3	23	3	y	0.85	47	8	47	8	y	0.84	73	14	73	14	y	0.83	38	8	38	8	y	0.79	42	11	42	11	y	ENSMUSG00000015120.16	Ube2i	chr17	protein_coding	ubiquitin-conjugating enzyme E2I
known_NIR_7798	chr17	25488453	25493497	-	25488453	25492295	5pMXE	ENSMUST00000174031.8	known	0.00	0	77	0	77	n	0.00	0	46	0	46	n	0.00	0	74	0	74	n	0.00	0	82	0	82	n	0.02	2	89	2	89	y	0.00	0	45	0	45	n	0.00	0	90	0	90	n	0.00	0	51	0	51	n	0.00	0	47	0	47	n	0.00	0	97	0	97	n	0.00	0	52	0	52	n	0.00	0	75	0	75	n	ENSMUSG00000015120.16	Ube2i	chr17	protein_coding	ubiquitin-conjugating enzyme E2I
known_NIR_7799	chr17	25488453	25493497	-	25488453	25493136	5pMXE	ENSMUST00000173713.8	known	0.00	0	26	0	26	n	0.00	0	21	0	21	n	0.00	0	35	0	35	n	0.00	0	45	0	45	n	0.04	2	55	2	55	y	0.00	0	15	0	15	n	0.00	0	35	0	35	n	0.00	0	23	0	23	n	0.00	0	47	0	47	n	0.00	0	73	0	73	n	0.00	0	38	0	38	n	0.00	0	42	0	42	n	ENSMUSG00000015120.16	Ube2i	chr17	protein_coding	ubiquitin-conjugating enzyme E2I
known_NIR_7800	chr17	25488453	25493497	-	25488453	25493147	5pMXE	ENSMUST00000049911.16	known	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.15	2	11	2	11	y	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	ENSMUSG00000015120.16	Ube2i	chr17	protein_coding	ubiquitin-conjugating enzyme E2I
known_NIR_7801	chr17	25798353	25804517	+	25798353	25831270	A3SS	ENSMUST00000137201.8	known	1.00	94	0	94	0	n	1.00	76	0	76	0	n	0.98	86	2	86	2	y	1.00	117	0	117	0	n	0.99	161	1	161	1	n	1.00	75	0	75	0	n	0.99	98	1	98	1	n	0.99	101	1	101	1	n	0.98	82	2	82	2	y	1.00	134	0	134	0	n	1.00	109	0	109	0	n	1.00	109	0	109	0	n	ENSMUSG00000002279.20	Lmf1	chr17	protein_coding	lipase maturation factor 1
known_NIR_7802	chr17	25807660	25815276	+	25807660	25831270	A3SS	ENSMUST00000141606.3	known	0.01	1	103	1	103	n	0.01	1	79	1	79	n	0.01	1	113	1	113	n	0.00	0	90	0	90	n	0.01	1	188	1	188	n	0.01	1	89	1	89	n	0.03	4	131	4	131	y	0.00	0	87	0	87	n	0.00	0	105	0	105	n	0.00	0	156	0	156	n	0.00	0	115	0	115	n	0.00	0	131	0	131	n	ENSMUSG00000002279.20	Lmf1	chr17	protein_coding	lipase maturation factor 1
known_NIR_7803	chr17	25807660	25831270	+	25798353	25831270	A5SS	ENSMUST00000137201.8	known	1.00	103	0	103	0	n	1.00	79	0	79	0	n	0.98	113	2	113	2	y	1.00	90	0	90	0	n	0.99	188	1	188	1	n	1.00	89	0	89	0	n	0.99	131	1	131	1	n	0.99	87	1	87	1	n	0.98	105	2	105	2	y	1.00	156	0	156	0	n	1.00	115	0	115	0	n	1.00	131	0	131	0	n	ENSMUSG00000002279.20	Lmf1	chr17	protein_coding	lipase maturation factor 1
known_NIR_7804	chr17	25807716	25831270	+	25807660	25831270	A5SS	ENSMUST00000141606.3	known	0.00	0	103	0	103	n	0.00	0	79	0	79	n	0.00	0	113	0	113	n	0.01	1	90	1	90	n	0.01	1	188	1	188	n	0.00	0	89	0	89	n	0.02	2	131	2	131	y	0.03	3	87	3	87	y	0.04	4	105	4	105	y	0.01	2	156	2	156	y	0.02	2	115	2	115	y	0.00	0	131	0	131	n	ENSMUSG00000002279.20	Lmf1	chr17	protein_coding	lipase maturation factor 1
known_NIR_7805	chr17	25864290	25873500	+	25864290	25873394	A3SS	ENSMUST00000141606.3	known	0.00	0	100	0	100	n	0.00	0	118	0	118	n	0.02	3	130	3	130	y	0.00	0	100	0	100	n	0.00	0	161	0	161	n	0.00	0	88	0	88	n	0.00	0	132	0	132	n	0.00	0	108	0	108	n	0.02	3	127	3	127	y	0.00	0	151	0	151	n	0.00	0	138	0	138	n	0.00	0	146	0	146	n	ENSMUSG00000002279.20	Lmf1	chr17	protein_coding	lipase maturation factor 1
known_NIR_7806	chr17	25946821	25947177	+	25946821	25947226	A3SS	ENSMUST00000237183.2	known	1.00	3	0	3	0	n	1.00	3	0	3	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	n	0.82	9	2	9	2	y	0.80	4	1	4	1	n	0.50	2	2	2	2	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.67	2	1	2	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	n	ENSMUSG00000041199.4	Rpusd1	chr17	protein_coding	RNA pseudouridylate synthase domain containing 1
known_NIR_7807	chr17	25994115	25995923	+	25994115	25995940	A3SS	ENSMUST00000134108.8	known	0.00	0	50	0	50	n	0.02	1	45	1	45	n	0.02	1	54	1	54	n	0.02	1	55	1	55	n	0.03	2	70	2	70	y	0.00	0	30	0	30	n	0.01	1	73	1	73	n	0.00	0	27	0	27	n	0.00	0	44	0	44	n	0.01	1	87	1	87	n	0.02	1	51	1	51	n	0.00	0	52	0	52	n	ENSMUSG00000002280.12	Ciao3	chr17	protein_coding	cytosolic iron-sulfur assembly component 3
known_NIR_7808	chr17	26003699	26004397	-	26003699	26003978	A5SS&ES	ENSMUST00000140738.8	known	0.00	0	26	0	26	n	0.00	0	28	0	28	n	0.03	1	30	1	30	n	0.05	1	20	1	20	n	0.05	1	20	1	20	n	0.00	0	12	0	12	n	0.00	0	24	0	24	n	0.00	0	7	0	7	n	0.00	0	16	0	16	n	0.00	0	29	0	29	n	0.00	0	25	0	25	n	0.09	2	20	2	20	y	ENSMUSG00000061046.10	Haghl	chr17	protein_coding	hydroxyacylglutathione hydrolase-like
known_NIR_7809	chr17	26003699	26004402	-	26003699	26003978	5pMXE	ENSMUST00000129917.8	known	0.07	2	26	2	26	y	0.03	1	28	1	28	n	0.06	2	30	2	30	y	0.09	2	20	2	20	y	0.00	0	20	0	20	n	0.00	0	12	0	12	n	0.11	3	24	3	24	y	0.12	1	7	1	7	n	0.11	2	16	2	16	y	0.15	5	29	5	29	y	0.26	9	25	9	25	y	0.17	4	20	4	20	y	ENSMUSG00000061046.10	Haghl	chr17	protein_coding	hydroxyacylglutathione hydrolase-like
known_NIR_7810	chr17	26003699	26004402	-	26003699;26004168	26003978;26004402	ES	ENSMUST00000140738.8	known	0.10	2	19.0	2	26;12	y	0.04	1	21.5	1	28;15	n	0.08	2	24.0	2	30;18	y	0.12	2	14.0	2	20;8	y	0.00	0	21.0	0	20;22	n	0.00	0	11.0	0	12;10	n	0.12	3	21.0	3	24;18	y	0.09	1	10.0	1	7;13	n	0.11	2	16.0	2	16;16	y	0.19	5	22.0	5	29;15	y	0.33	9	18.0	9	25;11	y	0.17	4	20.0	4	20;20	y	ENSMUSG00000061046.10	Haghl	chr17	protein_coding	hydroxyacylglutathione hydrolase-like
known_NIR_7811	chr17	26010650	26011305	-	26010650	26011027	5pMXE	ENSMUST00000237093.2	known	0.00	0	103	0	103	n	0.06	6	97	6	97	y	0.03	2	77	2	77	y	0.07	7	93	7	93	y	0.02	2	104	2	104	y	0.04	3	65	3	65	y	0.04	5	113	5	113	y	0.02	1	58	1	58	n	0.05	4	69	4	69	y	0.03	4	139	4	139	y	0.07	7	90	7	90	y	0.02	2	111	2	111	y	ENSMUSG00000057411.10	Antkmt	chr17	protein_coding	adenine nucleotide translocase lysine methyltransferase
known_NIR_7812	chr17	26014407	26015060	-	26014407	26015215	A5SS	ENSMUST00000165838.9	known	0.10	2	18	2	18	y	0.15	4	23	4	23	y	0.33	1	2	1	2	n	0.00	0	24	0	24	n	0.19	9	38	9	38	y	0.00	0	18	0	18	n	0.08	2	23	2	23	y	0.00	0	18	0	18	n	0.07	1	13	1	13	n	0.00	0	43	0	43	n	0.07	2	26	2	26	y	0.35	9	17	9	17	y	ENSMUSG00000002274.14	Metrn	chr17	protein_coding	meteorin, glial cell differentiation regulator
known_NIR_7813	chr17	26015323	26015839	-	26015615	26015839	A3SS	ENSMUST00000165838.9	known	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.11	2	17	2	17	y	0.00	0	38	0	38	n	0.33	1	2	1	2	n	0.00	0	17	0	17	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.00	0	21	0	21	n	0.17	2	10	2	10	y	0.06	1	16	1	16	n	ENSMUSG00000002274.14	Metrn	chr17	protein_coding	meteorin, glial cell differentiation regulator
known_NIR_7814	chr17	26048827	26048972	+	26048827	26048916	A3SS	ENSMUST00000133595.9	known	0.01	1	88	1	88	n	0.03	3	90	3	90	y	0.04	2	52	2	52	y	0.02	3	119	3	119	y	0.01	1	129	1	129	n	0.00	0	61	0	61	n	0.04	5	127	5	127	y	0.03	2	66	2	66	y	0.06	5	74	5	74	y	0.03	4	125	4	125	y	0.02	2	85	2	85	y	0.04	4	96	4	96	y	ENSMUSG00000025736.16	Jmjd8	chr17	protein_coding	jumonji domain containing 8
known_NIR_7815	chr17	26049403	26049484	+	26049408	26049484	A5SS	ENSMUST00000133595.9	known	0.00	0	110	0	110	n	0.00	0	82	0	82	n	0.00	0	64	0	64	n	0.00	0	113	0	113	n	0.07	9	129	9	129	y	0.00	0	52	0	52	n	0.00	0	110	0	110	n	0.00	0	68	0	68	n	0.00	0	90	0	90	n	0.00	0	124	0	124	n	0.00	0	86	0	86	n	0.00	0	92	0	92	n	ENSMUSG00000025736.16	Jmjd8	chr17	protein_coding	jumonji domain containing 8
known_NIR_7816	chr17	26051218	26052060	-	26051218	26051666	A5SS	ENSMUST00000044911.10	known	0.06	9	153	9	153	y	0.04	5	137	5	137	y	0.03	6	211	6	211	y	0.04	5	117	5	117	y	0.06	15	219	15	219	y	0.01	2	149	2	149	y	0.05	13	230	13	230	y	0.01	1	123	1	123	n	0.04	6	134	6	134	y	0.04	9	212	9	212	y	0.03	5	171	5	171	y	0.06	9	134	9	134	y	ENSMUSG00000039615.10	Stub1	chr17	protein_coding	STIP1 homology and U-Box containing protein 1
known_NIR_7817	chr17	26054327	26054444	-	26054351	26054444	A3SS	ENSMUST00000026831.14	known	0.37	7	12	7	12	y	0.41	7	10	7	10	y	0.57	4	3	4	3	n	0.50	8	8	8	8	y	0.18	2	9	2	9	y	0.50	2	2	2	2	n	0.36	9	16	9	16	y	0.33	1	2	1	2	n	0.30	3	7	3	7	y	0.30	9	21	9	21	y	0.53	9	8	9	8	y	0.30	3	7	3	7	y	ENSMUSG00000025735.14	Rhbdl1	chr17	protein_coding	rhomboid like 1
known_NIR_7818	chr17	26060829	26061154	-	26060829	26060964	5pMXE	ENSMUST00000177062.8	known	0.01	1	78	1	78	n	0.00	0	83	0	83	n	0.00	0	81	0	81	n	0.00	0	105	0	105	n	0.01	1	133	1	133	n	0.02	1	56	1	56	n	0.00	0	133	0	133	n	0.00	0	58	0	58	n	0.03	2	73	2	73	y	0.01	1	143	1	143	n	0.00	0	90	0	90	n	0.00	0	121	0	121	n	ENSMUSG00000025733.18	Rhot2	chr17	protein_coding	ras homolog family member T2
known_NIR_7819	chr17	26060829	26061154	-	26060829;26061065	26060964;26061154	ES	ENSMUST00000043897.16	known	0.01	1	83.0	1	78;88	n	0.00	0	81.0	0	83;79	n	0.00	0	84.5	0	81;88	n	0.00	0	112.5	0	105;120	n	0.01	1	140.0	1	133;147	n	0.02	1	58.0	1	56;60	n	0.00	0	125.0	0	133;117	n	0.00	0	52.5	0	58;47	n	0.02	2	79.5	2	73;86	y	0.01	1	131.0	1	143;119	n	0.00	0	95.5	0	90;101	n	0.00	0	129.0	0	121;137	n	ENSMUSG00000025733.18	Rhot2	chr17	protein_coding	ras homolog family member T2
known_NIR_7820	chr17	26060829	26061154	-	26061065	26061154	A3SS	ENSMUST00000177470.8	known	0.01	1	88	1	88	n	0.00	0	79	0	79	n	0.00	0	88	0	88	n	0.00	0	120	0	120	n	0.01	1	147	1	147	n	0.02	1	60	1	60	n	0.00	0	117	0	117	n	0.00	0	47	0	47	n	0.02	2	86	2	86	y	0.01	1	119	1	119	n	0.00	0	101	0	101	n	0.00	0	137	0	137	n	ENSMUSG00000025733.18	Rhot2	chr17	protein_coding	ras homolog family member T2
known_NIR_7821	chr17	26062955	26063063	-	26062958	26063063	A3SS	ENSMUST00000043897.16	known	0.00	0	87	0	87	n	0.00	0	96	0	96	n	0.00	0	74	0	74	n	0.04	4	106	4	106	y	0.01	1	126	1	126	n	0.00	0	49	0	49	n	0.00	0	112	0	112	n	0.00	0	75	0	75	n	0.00	0	78	0	78	n	0.00	0	117	0	117	n	0.01	1	79	1	79	n	0.00	0	86	0	86	n	ENSMUSG00000025733.18	Rhot2	chr17	protein_coding	ras homolog family member T2
known_NIR_7822	chr17	26063287	26063370	-	26063287	26063374	A5SS	ENSMUST00000043897.16	known	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.00	0	23	0	23	n	0.00	0	25	0	25	n	0.06	3	45	3	45	y	0.00	0	7	0	7	n	0.09	2	20	2	20	y	0.00	0	5	0	5	n	0.00	0	25	0	25	n	0.04	1	25	1	25	n	0.00	0	10	0	10	n	0.00	0	24	0	24	n	ENSMUSG00000025733.18	Rhot2	chr17	protein_coding	ras homolog family member T2
known_NIR_7823	chr17	26063287	26063521	-	26063287	26063374	A5SS	ENSMUST00000043897.16	known	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.00	0	23	0	23	n	0.00	0	25	0	25	n	0.00	0	45	0	45	n	0.00	0	7	0	7	n	0.09	2	20	2	20	y	0.00	0	5	0	5	n	0.04	1	25	1	25	n	0.00	0	25	0	25	n	0.00	0	10	0	10	n	0.08	2	24	2	24	y	ENSMUSG00000025733.18	Rhot2	chr17	protein_coding	ras homolog family member T2
known_NIR_7824	chr17	26082939	26083225	-	26083013	26083225	A3SS	ENSMUST00000237876.2	known	0.01	1	159	1	159	n	0.03	5	178	5	178	y	0.00	0	70	0	70	n	0.01	2	173	2	173	y	0.01	2	160	2	160	y	0.07	3	42	3	42	y	0.00	0	194	0	194	n	0.03	2	73	2	73	y	0.02	2	128	2	128	y	0.00	0	293	0	293	n	0.00	1	239	1	239	n	0.01	2	158	2	158	y	ENSMUSG00000025732.7	Mcrip2	chr17	protein_coding	MAPK regulated corepressor interacting protein 2
known_NIR_7825	chr17	26082942	26083225	-	26083013	26083225	A3SS	ENSMUST00000237876.2	known	0.00	0	159	0	159	n	0.00	0	178	0	178	n	0.00	0	70	0	70	n	0.00	0	173	0	173	n	0.01	1	160	1	160	n	0.00	0	42	0	42	n	0.00	0	194	0	194	n	0.00	0	73	0	73	n	0.00	0	128	0	128	n	0.01	3	293	3	293	y	0.01	2	239	2	239	y	0.01	2	158	2	158	y	ENSMUSG00000025732.7	Mcrip2	chr17	protein_coding	MAPK regulated corepressor interacting protein 2
known_NIR_7826	chr17	26083013	26083177	-	26083013	26083225	A5SS	ENSMUST00000237876.2	known	0.02	4	159	4	159	y	0.02	4	178	4	178	y	0.00	0	70	0	70	n	0.01	2	173	2	173	y	0.00	0	160	0	160	n	0.00	0	42	0	42	n	0.01	2	194	2	194	y	0.00	0	73	0	73	n	0.01	1	128	1	128	n	0.01	2	293	2	293	y	0.02	5	239	5	239	y	0.01	2	158	2	158	y	ENSMUSG00000025732.7	Mcrip2	chr17	protein_coding	MAPK regulated corepressor interacting protein 2
known_NIR_7827	chr17	26083695	26084509	-	26083695	26086608	A5SS	ENSMUST00000237876.2	known	0.75	6	2	6	2	n	0.92	11	1	11	1	n	1.00	3	0	3	0	n	1.00	16	0	16	0	n	0.82	14	3	14	3	y	0.75	3	1	3	1	n	1.00	3	0	3	0	n	1.00	5	0	5	0	n	1.00	5	0	5	0	n	0.69	9	4	9	4	y	0.67	6	3	6	3	n	0.67	6	3	6	3	n	ENSMUSG00000025732.7	Mcrip2	chr17	protein_coding	MAPK regulated corepressor interacting protein 2
known_NIR_7828	chr17	26083695	26087388	-	26083695	26086608	5pMXE	ENSMUST00000237876.2	known	0.98	81	2	81	2	y	0.99	77	1	77	1	n	1.00	30	0	30	0	n	1.00	103	0	103	0	n	0.97	111	3	111	3	y	0.97	31	1	31	1	n	1.00	135	0	135	0	n	1.00	27	0	27	0	n	1.00	100	0	100	0	n	0.97	153	4	153	4	y	0.98	143	3	143	3	y	0.97	84	3	84	3	y	ENSMUSG00000025732.7	Mcrip2	chr17	protein_coding	MAPK regulated corepressor interacting protein 2
known_NIR_7829	chr17	26083695;26084641	26084509;26087388	-	26083695	26087388	cassetteExon	ENSMUST00000235806.2	known	0.05	4.0	81	6;2	81	y	0.10	9.0	77	11;7	77	y	0.12	4.0	30	3;5	30	y	0.09	10.0	103	16;4	103	y	0.07	9.0	111	14;4	111	y	0.09	3.0	31	3;3	31	y	0.02	2.5	135	3;2	135	y	0.08	2.5	27	5;0	27	n	0.04	4.5	100	5;4	100	y	0.04	6.5	153	9;4	153	y	0.07	10.5	143	6;15	143	y	0.04	3.5	84	6;1	84	n	ENSMUSG00000025732.7	Mcrip2	chr17	protein_coding	MAPK regulated corepressor interacting protein 2
known_NIR_7830	chr17	26094700	26095194	+	26094700;26095096	26094934;26095194	ES	ENSMUST00000026827.16	known	0.01	6	698.5	6	704;693	y	0.00	1	713.0	1	676;750	n	0.00	1	281.0	1	258;304	n	0.00	0	699.0	0	713;685	n	0.01	5	635.0	5	579;691	y	0.01	2	188.0	2	161;215	y	0.01	8	766.0	8	685;847	y	0.00	0	292.5	0	281;304	n	0.00	2	580.0	2	537;623	y	0.00	2	1005.5	2	898;1113	y	0.00	1	745.0	1	708;782	n	0.01	5	702.5	5	665;740	y	ENSMUSG00000025731.17	Mettl26	chr17	protein_coding	methyltransferase like 26
known_NIR_7831	chr17	26146730	26147765	-	26145489	26147765	A3SS	ENSMUST00000133650.9	known	1.00	58	0	58	0	n	0.97	76	2	76	2	y	1.00	66	0	66	0	n	1.00	74	0	74	0	n	1.00	82	0	82	0	n	1.00	36	0	36	0	n	1.00	71	0	71	0	n	1.00	37	0	37	0	n	1.00	48	0	48	0	n	1.00	81	0	81	0	n	1.00	56	0	56	0	n	1.00	71	0	71	0	n	ENSMUSG00000025728.17	Pigq	chr17	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class Q
known_NIR_7832	chr17	26150801	26153732	-	26150801;26151205	26151079;26153732	ES	ENSMUST00000133650.9	known	0.00	0	38.5	0	41;36	n	0.05	2	40.5	2	38;43	y	0.00	0	51.5	0	47;56	n	0.00	0	59.0	0	66;52	n	0.00	0	85.5	0	84;87	n	0.00	0	33.0	0	31;35	n	0.00	0	66.5	0	69;64	n	0.00	0	37.0	0	31;43	n	0.00	0	33.5	0	34;33	n	0.00	0	64.0	0	72;56	n	0.00	0	36.5	0	32;41	n	0.00	0	57.0	0	56;58	n	ENSMUSG00000025728.17	Pigq	chr17	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class Q
known_NIR_7833	chr17	26150801	26153732	-	26151205	26153732	A3SS	ENSMUST00000148045.8	known	0.00	0	36	0	36	n	0.04	2	43	2	43	y	0.00	0	56	0	56	n	0.00	0	52	0	52	n	0.00	0	87	0	87	n	0.00	0	35	0	35	n	0.00	0	64	0	64	n	0.00	0	43	0	43	n	0.00	0	33	0	33	n	0.00	0	56	0	56	n	0.00	0	41	0	41	n	0.00	0	58	0	58	n	ENSMUSG00000025728.17	Pigq	chr17	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class Q
known_NIR_7834	chr17	26178703	26178781	-	26178707	26178781	A3SS	ENSMUST00000212735.2	known	0.04	1	22	1	22	n	0.11	3	24	3	24	y	0.15	7	39	7	39	y	0.10	3	28	3	28	y	0.13	5	33	5	33	y	0.05	1	18	1	18	n	0.11	2	17	2	17	y	0.08	2	23	2	23	y	0.14	3	18	3	18	y	0.19	5	21	5	21	y	0.10	3	27	3	27	y	0.06	2	33	2	33	y	ENSMUSG00000037326.11	Capn15	chr17	protein_coding	calpain 15
known_NIR_7835	chr17	26178959	26179311	-	26178959	26179039	A5SS	ENSMUST00000212520.2	known	0.00	0	26	0	26	n	0.00	0	15	0	15	n	0.04	1	22	1	22	n	0.00	0	15	0	15	n	0.00	0	31	0	31	n	0.20	3	12	3	12	y	0.07	1	14	1	14	n	0.00	0	15	0	15	n	0.04	1	22	1	22	n	0.00	0	15	0	15	n	0.05	1	19	1	19	n	0.13	2	13	2	13	y	ENSMUSG00000037326.11	Capn15	chr17	protein_coding	calpain 15
known_NIR_7836	chr17	26178959	26179311	-	26178959;26179205	26179039;26179311	ES	ENSMUST00000212149.2	known	0.00	0	17.0	0	26;8	n	0.00	0	8.5	0	15;2	n	0.06	1	14.5	1	22;7	n	0.00	0	10.5	0	15;6	n	0.00	0	19.0	0	31;7	n	0.30	3	7.0	3	12;2	y	0.12	1	7.0	1	14;0	n	0.00	0	9.5	0	15;4	n	0.08	1	11.0	1	22;0	n	0.00	0	8.0	0	15;1	n	0.08	1	11.5	1	19;4	n	0.21	2	7.5	2	13;2	y	ENSMUSG00000037326.11	Capn15	chr17	protein_coding	calpain 15
known_NIR_7837	chr17	26184501;26192353	26192065;26204445	-	26184501	26204445	cassetteExon	ENSMUST00000212735.2	known	0.40	8.5	13	10;7	13	y	0.60	3.0	2	3;3	2	n	0.17	2.0	10	3;1	10	n	0.33	3.5	7	3;4	7	y	0.52	12.0	11	14;10	11	y	0.44	4.0	5	5;3	5	y	0.67	8.0	4	5;11	4	y	0.76	6.5	2	10;3	2	y	0.36	5.0	9	6;4	9	y	0.67	10.0	5	13;7	5	y	0.52	6.5	6	7;6	6	y	0.54	7.0	6	9;5	6	y	ENSMUSG00000037326.11	Capn15	chr17	protein_coding	calpain 15
known_NIR_7838	chr17	26227864;26231105	26230971;26232748	-	26227864	26232748	cassetteExon	ENSMUST00000118828.8	known	0.68	10.5	5	13;8	5	y	0.43	7.5	10	8;7	10	y	0.42	9.5	13	13;6	13	y	0.49	8.5	9	12;5	9	y	0.58	11.0	8	9;13	8	y	0.37	3.5	6	2;5	6	y	0.81	25.5	6	27;24	6	y	0.49	9.5	10	10;9	10	y	0.75	9.0	3	8;10	3	y	0.48	5.5	6	3;8	6	y	0.83	10.0	2	11;9	2	y	0.66	11.5	6	9;14	6	y	ENSMUSG00000037098.19	Rab11fip3	chr17	protein_coding	RAB11 family interacting protein 3 (class II)
known_NIR_7839	chr17	26301235	26301945	-	26301235	26301850	A5SS	ENSMUST00000235318.2	known	0.01	4	390	4	390	y	0.01	5	465	5	465	y	0.00	0	132	0	132	n	0.02	11	602	11	602	y	0.01	6	553	6	553	y	0.00	0	118	0	118	n	0.01	11	729	11	729	y	0.00	0	156	0	156	n	0.01	2	370	2	370	y	0.01	12	812	12	812	y	0.01	7	626	7	626	y	0.01	4	411	4	411	y	ENSMUSG00000036775.14	Decr2	chr17	protein_coding	2-4-dienoyl-Coenzyme A reductase 2, peroxisomal
known_NIR_7840	chr17	26301944	26302550	-	26302067	26302550	A3SS	ENSMUST00000235318.2	known	0.01	3	360	3	360	y	0.01	2	324	2	324	y	0.00	0	106	0	106	n	0.01	4	515	4	515	y	0.00	1	531	1	531	n	0.00	0	94	0	94	n	0.01	3	556	3	556	y	0.02	2	117	2	117	y	0.00	1	326	1	326	n	0.01	5	717	5	717	y	0.01	4	497	4	497	y	0.00	0	302	0	302	n	ENSMUSG00000036775.14	Decr2	chr17	protein_coding	2-4-dienoyl-Coenzyme A reductase 2, peroxisomal
known_NIR_7841	chr17	26306433;26307047	26306996;26307903	-	26306433	26307903	cassetteExon	ENSMUST00000137672.3	known	1.00	269.0	1	281;257	1	n	1.00	233.0	0	243;223	0	n	0.99	92.0	1	105;79	1	n	1.00	491.5	0	511;472	0	n	1.00	436.0	0	463;409	0	n	1.00	79.0	0	88;70	0	n	1.00	467.5	0	484;451	0	n	1.00	135.0	0	149;121	0	n	1.00	334.0	0	361;307	0	n	1.00	651.5	2	686;617	2	y	1.00	414.0	0	458;370	0	n	1.00	294.5	0	283;306	0	n	ENSMUSG00000036775.14	Decr2	chr17	protein_coding	2-4-dienoyl-Coenzyme A reductase 2, peroxisomal
known_NIR_7842	chr17	26307971	26309071	-	26307971	26308938	A5SS	ENSMUST00000137672.3	known	0.00	1	279	1	279	n	0.00	0	219	0	219	n	0.00	0	93	0	93	n	0.00	0	506	0	506	n	0.00	0	412	0	412	n	0.00	0	80	0	80	n	0.00	0	506	0	506	n	0.00	0	128	0	128	n	0.00	0	307	0	307	n	0.00	0	597	0	597	n	0.01	2	360	2	360	y	0.00	1	297	1	297	n	ENSMUSG00000036775.14	Decr2	chr17	protein_coding	2-4-dienoyl-Coenzyme A reductase 2, peroxisomal
known_NIR_7843	chr17	26311126;26311531	26311481;26312591	-	26311126	26312591	cassetteExon	ENSMUST00000236967.2	known	0.17	2.5	12	2;3	12	y	0.17	2.0	10	1;3	10	n	-	-	-	-	-	-	0.10	1.5	14	1;2	14	n	0.07	1.0	14	1;1	14	n	0.00	0.0	6	0;0	6	n	0.08	1.0	11	1;1	11	n	0.20	0.5	2	1;0	2	n	0.00	0.0	7	0;0	7	n	0.00	0.0	13	0;0	13	n	0.11	1.5	12	0;3	12	n	0.05	0.5	10	0;1	10	n	ENSMUSG00000024177.10	Nme4	chr17	protein_coding	NME/NM23 nucleoside diphosphate kinase 4
known_NIR_7844	chr17	26339436	26340514	+	26339659	26340514	A5SS	ENSMUST00000236993.2	known	0.03	2	56	2	56	y	0.13	9	62	9	62	y	0.17	12	57	12	57	y	0.17	11	52	11	52	y	0.11	7	55	7	55	y	0.22	11	40	11	40	y	0.05	3	52	3	52	y	0.16	7	38	7	38	y	0.04	1	27	1	27	n	0.09	5	50	5	50	y	0.11	6	48	6	48	y	0.07	4	53	4	53	y	ENSMUSG00000024180.15	Pgap6	chr17	protein_coding	post-glycosylphosphatidylinositol attachment to proteins 6
known_NIR_7845	chr17	26339436;26339659	26339513;26340514	+	26339436	26340514	cassetteExon	ENSMUST00000235821.2	known	0.96	45.0	2	34;56	2	y	0.86	55.0	9	48;62	9	y	0.82	56.5	12	56;57	12	y	0.84	57.5	11	63;52	11	y	0.89	58.5	7	62;55	7	y	0.79	42.5	11	45;40	11	y	0.96	66.5	3	81;52	3	y	0.81	29.5	7	21;38	7	y	0.97	30.5	1	34;27	1	n	0.92	58.5	5	67;50	5	y	0.91	60.5	6	73;48	6	y	0.92	49.0	4	45;53	4	y	ENSMUSG00000024180.15	Pgap6	chr17	protein_coding	post-glycosylphosphatidylinositol attachment to proteins 6
known_NIR_7846	chr17	26340630	26341061	+	26340630	26340912	A3SS	ENSMUST00000235821.2	known	0.06	3	50	3	50	y	0.06	5	72	5	72	y	0.00	0	60	0	60	n	0.00	0	68	0	68	n	0.03	2	72	2	72	y	0.04	2	55	2	55	y	0.02	1	64	1	64	n	0.00	0	47	0	47	n	0.00	0	34	0	34	n	0.00	0	72	0	72	n	0.04	3	71	3	71	y	0.00	0	50	0	50	n	ENSMUSG00000024180.15	Pgap6	chr17	protein_coding	post-glycosylphosphatidylinositol attachment to proteins 6
known_NIR_7847	chr17	26344365	26344474	+	26344365	26344452	A3SS	ENSMUST00000025014.10	known	0.01	2	205	2	205	y	0.03	8	239	8	239	y	0.02	3	164	3	164	y	0.01	2	243	2	243	y	0.02	4	187	4	187	y	0.00	0	105	0	105	n	0.01	3	256	3	256	y	0.01	1	122	1	122	n	0.01	2	192	2	192	y	0.02	6	272	6	272	y	0.03	6	227	6	227	y	0.00	0	222	0	222	n	ENSMUSG00000024181.10	Mrpl28	chr17	protein_coding	mitochondrial ribosomal protein L28
known_NIR_7848	chr17	26344538	26345266	+	26344538	26345245	A3SS	ENSMUST00000025014.10	known	0.00	0	196	0	196	n	0.00	0	291	0	291	n	0.00	0	155	0	155	n	0.00	0	231	0	231	n	0.00	0	234	0	234	n	0.00	0	107	0	107	n	0.00	0	313	0	313	n	0.00	0	134	0	134	n	0.00	0	230	0	230	n	0.00	0	314	0	314	n	0.00	0	296	0	296	n	0.02	7	286	7	286	y	ENSMUSG00000024181.10	Mrpl28	chr17	protein_coding	mitochondrial ribosomal protein L28
known_NIR_7849	chr17	26409205	26412913	+	26409205;26411597	26411490;26412913	ES	ENSMUST00000074370.10	known	0.33	11	22.0	11	14;30	y	0.43	13	17.0	13	17;17	y	0.69	46	21.0	46	21;21	y	0.61	29	18.5	29	22;15	y	0.64	36	20.0	36	23;17	y	0.53	16	14.0	16	8;20	y	0.40	17	25.0	17	24;26	y	0.54	19	16.0	19	17;15	y	0.55	20	16.5	20	21;12	y	0.41	16	23.5	16	21;26	y	0.43	12	16.0	12	16;16	y	0.47	21	24.0	21	21;27	y	ENSMUSG00000024182.17	Axin1	chr17	protein_coding	axin 1
known_NIR_7850	chr17	26432880	26433320	-	26432880	26433302	A5SS	ENSMUST00000114988.8	known	0.06	6	89	6	89	y	0.09	10	107	10	107	y	0.06	6	88	6	88	y	0.07	6	83	6	83	y	0.08	11	129	11	129	y	0.11	6	48	6	48	y	0.09	12	122	12	122	y	0.00	0	41	0	41	n	0.08	7	85	7	85	y	0.04	7	180	7	180	y	0.06	7	108	7	108	y	0.04	6	130	6	130	y	ENSMUSG00000024187.16	Fam234a	chr17	protein_coding	family with sequence similarity 234, member A
known_NIR_7851	chr17	26437292	26439255	-	26437292;26437725	26437609;26439255	ES	ENSMUST00000114988.8	known	0.04	3	68.5	3	76;61	y	0.00	0	70.0	0	55;85	n	0.00	0	75.5	0	80;71	n	0.00	0	78.5	0	81;76	n	0.00	0	127.0	0	139;115	n	0.00	0	44.5	0	48;41	n	0.01	1	117.5	1	130;105	n	0.00	0	65.5	0	66;65	n	0.00	0	70.5	0	68;73	n	0.00	0	123.0	0	131;115	n	0.00	0	75.0	0	81;69	n	0.00	0	116.0	0	128;104	n	ENSMUSG00000024187.16	Fam234a	chr17	protein_coding	family with sequence similarity 234, member A
known_NIR_7852	chr17	26439554	26444902	-	26439554	26444886	A5SS	ENSMUST00000114988.8	known	0.07	4	55	4	55	y	0.13	5	34	5	34	y	0.07	3	42	3	42	y	0.06	4	67	4	67	y	0.13	10	68	10	68	y	0.25	7	21	7	21	y	0.19	12	51	12	51	y	0.24	7	22	7	22	y	0.04	2	51	2	51	y	0.07	6	81	6	81	y	0.00	0	37	0	37	n	0.08	7	77	7	77	y	ENSMUSG00000024187.16	Fam234a	chr17	protein_coding	family with sequence similarity 234, member A
known_NIR_7853	chr17	26439554	26462964	-	26439554	26444886	A5SS&ES	ENSMUST00000114988.8	known	0.18	12	55	12	55	y	0.37	20	34	20	34	y	0.35	23	42	23	42	y	0.21	18	67	18	67	y	0.39	44	68	44	68	y	0.47	19	21	19	21	y	0.32	24	51	24	51	y	0.35	12	22	12	22	y	0.16	10	51	10	51	y	0.28	31	81	31	81	y	0.14	6	37	6	37	y	0.23	23	77	23	77	y	ENSMUSG00000024187.16	Fam234a	chr17	protein_coding	family with sequence similarity 234, member A
known_NIR_7854	chr17	26439554	26462964	-	26439554	26444902	A5SS&ES	ENSMUST00000234262.2	known	0.75	12	4	12	4	y	0.80	20	5	20	5	y	0.88	23	3	23	3	y	0.82	18	4	18	4	y	0.81	44	10	44	10	y	0.73	19	7	19	7	y	0.67	24	12	24	12	y	0.63	12	7	12	7	y	0.83	10	2	10	2	y	0.84	31	6	31	6	y	1.00	6	0	6	0	n	0.77	23	7	23	7	y	ENSMUSG00000024187.16	Fam234a	chr17	protein_coding	family with sequence similarity 234, member A
known_NIR_7855	chr17	26439554	26462964	-	26439554	26462980	A5SS	ENSMUST00000141240.3	known	0.30	12	28	12	28	y	0.67	20	10	20	10	y	0.45	23	28	23	28	y	0.38	18	29	18	29	y	0.50	44	44	44	44	y	0.43	19	25	19	25	y	0.40	24	36	24	36	y	0.33	12	24	12	24	y	0.29	10	25	10	25	y	0.44	31	40	31	40	y	0.19	6	26	6	26	y	0.39	23	36	23	36	y	ENSMUSG00000024187.16	Fam234a	chr17	protein_coding	family with sequence similarity 234, member A
known_NIR_7856	chr17	26439554	26462964	-	26439554;26444997	26444886;26462964	ES	ENSMUST00000234687.2	known	0.27	12	33.0	12	55;11	y	0.50	20	20.0	20	34;6	y	0.47	23	26.0	23	42;10	y	0.28	18	45.5	18	67;24	y	0.47	44	50.5	44	68;33	y	0.57	19	14.5	19	21;8	y	0.42	24	32.5	24	51;14	y	0.41	12	17.0	12	22;12	y	0.24	10	32.0	10	51;13	y	0.39	31	49.0	31	81;17	y	0.20	6	24.0	6	37;11	y	0.33	23	46.0	23	77;15	y	ENSMUSG00000024187.16	Fam234a	chr17	protein_coding	family with sequence similarity 234, member A
known_NIR_7857	chr17	26439554	26462980	-	26439554	26444886	A5SS&ES	ENSMUST00000234687.2	known	0.34	28	55	28	55	y	0.23	10	34	10	34	y	0.40	28	42	28	42	y	0.30	29	67	29	67	y	0.39	44	68	44	68	y	0.54	25	21	25	21	y	0.41	36	51	36	51	y	0.52	24	22	24	22	y	0.33	25	51	25	51	y	0.33	40	81	40	81	y	0.41	26	37	26	37	y	0.32	36	77	36	77	y	ENSMUSG00000024187.16	Fam234a	chr17	protein_coding	family with sequence similarity 234, member A
known_NIR_7858	chr17	26439554	26462980	-	26439554;26444997	26444886;26462980	ES	ENSMUST00000114988.8	known	0.38	28	46.0	28	55;37	y	0.30	10	23.0	10	34;12	y	0.49	28	29.0	28	42;16	y	0.37	29	48.5	29	67;30	y	0.46	44	52.5	44	68;37	y	0.62	25	15.5	25	21;10	y	0.49	36	37.0	36	51;23	y	0.56	24	18.5	24	22;15	y	0.45	25	31.0	25	51;11	y	0.41	40	56.5	40	81;32	y	0.50	26	26.0	26	37;15	y	0.40	36	53.0	36	77;29	y	ENSMUSG00000024187.16	Fam234a	chr17	protein_coding	family with sequence similarity 234, member A
known_NIR_7859	chr17	26439554	26462980	-	26439554;26444997	26444902;26462980	ES	ENSMUST00000234262.2	known	0.58	28	20.5	28	4;37	y	0.54	10	8.5	10	5;12	y	0.75	28	9.5	28	3;16	y	0.63	29	17.0	29	4;30	y	0.65	44	23.5	44	10;37	y	0.75	25	8.5	25	7;10	y	0.67	36	17.5	36	12;23	y	0.69	24	11.0	24	7;15	y	0.79	25	6.5	25	2;11	y	0.68	40	19.0	40	6;32	y	0.78	26	7.5	26	0;15	n	0.67	36	18.0	36	7;29	y	ENSMUSG00000024187.16	Fam234a	chr17	protein_coding	family with sequence similarity 234, member A
known_NIR_7860	chr17	26439554;26444997	26444902;26462964	-	26439554	26462964	cassetteExon	ENSMUST00000234175.2	known	0.38	7.5	12	4;11	12	y	0.22	5.5	20	5;6	20	y	0.22	6.5	23	3;10	23	y	0.44	14.0	18	4;24	18	y	0.33	21.5	44	10;33	44	y	0.28	7.5	19	7;8	19	y	0.35	13.0	24	12;14	24	y	0.44	9.5	12	7;12	12	y	0.43	7.5	10	2;13	10	y	0.27	11.5	31	6;17	31	y	0.48	5.5	6	0;11	6	n	0.32	11.0	23	7;15	23	y	ENSMUSG00000024187.16	Fam234a	chr17	protein_coding	family with sequence similarity 234, member A
known_NIR_7861	chr17	26444997	26462964	-	26444997	26462980	A5SS	ENSMUST00000114988.8	known	0.23	11	37	11	37	y	0.33	6	12	6	12	y	0.38	10	16	10	16	y	0.44	24	30	24	30	y	0.47	33	37	33	37	y	0.44	8	10	8	10	y	0.38	14	23	14	23	y	0.44	12	15	12	15	y	0.54	13	11	13	11	y	0.35	17	32	17	32	y	0.42	11	15	11	15	y	0.34	15	29	15	29	y	ENSMUSG00000024187.16	Fam234a	chr17	protein_coding	family with sequence similarity 234, member A
known_NIR_7862	chr17	26472065	26474005	+	26472065	26472948	A3SS	ENSMUST00000133032.8	known	0.71	20	8	20	8	y	0.83	20	4	20	4	y	0.60	29	19	29	19	y	0.78	18	5	18	5	y	0.67	26	13	26	13	y	0.74	14	5	14	5	y	0.65	32	17	32	17	y	0.62	13	8	13	8	y	0.56	10	8	10	8	y	0.82	33	7	33	7	y	0.56	18	14	18	14	y	0.63	22	13	22	13	y	ENSMUSG00000024188.17	Luc7l	chr17	protein_coding	Luc7-like
known_NIR_7863	chr17	26472065	26474005	+	26473362	26474005	A5SS	ENSMUST00000154235.8	known	1.00	20	0	20	0	n	1.00	20	0	20	0	n	1.00	29	0	29	0	n	1.00	18	0	18	0	n	0.96	26	1	26	1	n	1.00	14	0	14	0	n	0.89	32	4	32	4	y	1.00	13	0	13	0	n	1.00	10	0	10	0	n	1.00	33	0	33	0	n	1.00	18	0	18	0	n	1.00	22	0	22	0	n	ENSMUSG00000024188.17	Luc7l	chr17	protein_coding	Luc7-like
known_NIR_7864	chr17	26472065;26473018	26472948;26474005	+	26472065	26474005	cassetteExon	ENSMUST00000025023.15	known	0.20	5.0	20	8;2	20	y	0.17	4.0	20	4;4	20	y	0.27	10.5	29	19;2	29	y	0.12	2.5	18	5;0	18	n	0.26	9.0	26	13;5	26	y	0.15	2.5	14	5;0	14	n	0.29	13.0	32	17;9	32	y	0.24	4.0	13	8;0	13	n	0.38	6.0	10	8;4	10	y	0.12	4.5	33	7;2	33	y	0.33	9.0	18	14;4	18	y	0.27	8.0	22	13;3	22	y	ENSMUSG00000024188.17	Luc7l	chr17	protein_coding	Luc7-like
known_NIR_7865	chr17	26472065;26473362	26472948;26474005	+	26472065	26474005	cassetteExon	ENSMUST00000025023.15	known	0.17	4.0	20	8;0	20	n	0.09	2.0	20	4;0	20	n	0.25	9.5	29	19;0	29	n	0.12	2.5	18	5;0	18	n	0.21	7.0	26	13;1	26	n	0.15	2.5	14	5;0	14	n	0.25	10.5	32	17;4	32	y	0.24	4.0	13	8;0	13	n	0.29	4.0	10	8;0	10	n	0.10	3.5	33	7;0	33	n	0.28	7.0	18	14;0	18	n	0.23	6.5	22	13;0	22	n	ENSMUSG00000024188.17	Luc7l	chr17	protein_coding	Luc7-like
known_NIR_7866	chr17	26473018	26474005	+	26473362	26474005	A5SS	ENSMUST00000154235.8	known	1.00	2	0	2	0	n	1.00	4	0	4	0	n	1.00	2	0	2	0	n	-	-	-	-	-	-	0.83	5	1	5	1	n	-	-	-	-	-	-	0.69	9	4	9	4	y	-	-	-	-	-	-	1.00	4	0	4	0	n	1.00	2	0	2	0	n	1.00	4	0	4	0	n	1.00	3	0	3	0	n	ENSMUSG00000024188.17	Luc7l	chr17	protein_coding	Luc7-like
known_NIR_7867	chr17	26780606	26787639	+	26780606	26827567	A3SS	ENSMUST00000167662.8	known	0.01	1	90	1	90	n	0.02	1	65	1	65	n	0.00	0	100	0	100	n	0.00	0	123	0	123	n	0.00	0	151	0	151	n	0.00	0	81	0	81	n	0.00	0	137	0	137	n	0.02	2	89	2	89	y	0.01	1	81	1	81	n	0.01	1	143	1	143	n	0.01	1	103	1	103	n	0.01	1	122	1	122	n	ENSMUSG00000001576.16	Ergic1	chr17	protein_coding	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1
known_NIR_7868	chr17	26780606;26824558	26824438;26827567	+	26780606	26827567	cassetteExon	ENSMUST00000167662.8	known	0.03	2.5	90	1;4	90	n	0.02	1.0	65	0;2	65	n	0.00	0.5	100	0;1	100	n	0.00	0.5	123	0;1	123	n	0.01	1.0	151	0;2	151	n	0.00	0.0	81	0;0	81	n	0.00	0.5	137	0;1	137	n	0.00	0.0	89	0;0	89	n	0.01	0.5	81	0;1	81	n	0.02	3.5	143	1;6	143	n	0.00	0.5	103	0;1	103	n	0.02	3.0	122	3;3	122	y	ENSMUSG00000001576.16	Ergic1	chr17	protein_coding	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1
known_NIR_7869	chr17	26848653;26849053	26848875;26853391	+	26848653	26853391	cassetteExon	ENSMUST00000167662.8	known	0.01	2.0	145	2;2	145	y	0.00	0.5	107	1;0	107	n	0.00	0.5	160	1;0	160	n	0.00	0.0	190	0;0	190	n	0.00	1.0	210	0;2	210	n	0.00	0.0	106	0;0	106	n	0.00	1.0	202	2;0	202	n	0.00	0.0	106	0;0	106	n	0.00	0.0	143	0;0	143	n	0.00	0.5	215	1;0	215	n	0.00	0.0	183	0;0	183	n	0.01	1.0	162	1;1	162	n	ENSMUSG00000001576.16	Ergic1	chr17	protein_coding	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1
known_NIR_7870	chr17	26849503	26853391	+	26848653	26853391	A5SS	ENSMUST00000167662.8	known	0.00	0	145	0	145	n	0.03	3	107	3	107	y	0.00	0	160	0	160	n	0.00	0	190	0	190	n	0.00	1	210	1	210	n	0.00	0	106	0	106	n	0.00	0	202	0	202	n	0.00	0	106	0	106	n	0.00	0	143	0	143	n	0.00	0	215	0	215	n	0.00	0	183	0	183	n	0.00	0	162	0	162	n	ENSMUSG00000001576.16	Ergic1	chr17	protein_coding	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1
known_NIR_7871	chr17	26851000	26853391	+	26848653	26853391	A5SS	ENSMUST00000167662.8	known	0.00	0	145	0	145	n	0.01	1	107	1	107	n	0.02	3	160	3	160	y	0.02	4	190	4	190	y	0.02	4	210	4	210	y	0.00	0	106	0	106	n	0.00	0	202	0	202	n	0.04	4	106	4	106	y	0.01	2	143	2	143	y	0.02	5	215	5	215	y	0.03	5	183	5	183	y	0.01	1	162	1	162	n	ENSMUSG00000001576.16	Ergic1	chr17	protein_coding	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1
known_NIR_7872	chr17	26860678;26873834	26873801;26874041	+	26860678	26874041	cassetteExon	ENSMUST00000167662.8	known	0.04	8.0	187	11;5	187	y	0.02	4.5	181	7;2	181	y	0.02	3.5	193	7;0	193	n	0.02	5.0	229	8;2	229	y	0.02	6.0	253	8;4	253	y	0.04	5.5	134	6;5	134	y	0.01	4.0	275	5;3	275	y	0.02	3.0	139	5;1	139	n	0.03	5.0	187	7;3	187	y	0.01	3.5	280	5;2	280	y	0.04	9.0	226	14;4	226	y	0.01	3.0	198	6;0	198	n	ENSMUSG00000001576.16	Ergic1	chr17	protein_coding	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1
known_NIR_7873	chr17	26860678;26873927	26873801;26874041	+	26860678	26874041	cassetteExon	ENSMUST00000167662.8	known	0.05	10.5	187	11;10	187	y	0.02	3.5	181	7;0	181	n	0.04	7.0	193	7;7	193	y	0.03	7.5	229	8;7	229	y	0.03	8.0	253	8;8	253	y	0.04	5.0	134	6;4	134	y	0.03	9.5	275	5;14	275	y	0.03	5.0	139	5;5	139	y	0.03	5.0	187	7;3	187	y	0.03	7.5	280	5;10	280	y	0.05	11.5	226	14;9	226	y	0.04	9.0	198	6;12	198	y	ENSMUSG00000001576.16	Ergic1	chr17	protein_coding	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1
known_NIR_7874	chr17	26873834	26874041	+	26873927	26874041	A5SS	ENSMUST00000235653.2	known	0.33	5	10	5	10	y	1.00	2	0	2	0	n	0.00	0	7	0	7	n	0.22	2	7	2	7	n	0.33	4	8	4	8	y	0.56	5	4	5	4	n	0.18	3	14	3	14	y	0.17	1	5	1	5	n	0.50	3	3	3	3	n	0.17	2	10	2	10	y	0.31	4	9	4	9	y	0.00	0	12	0	12	n	ENSMUSG00000001576.16	Ergic1	chr17	protein_coding	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1
known_NIR_7875	chr17	26895552	26901652	+	26882365	26901652	A5SS	ENSMUST00000236346.2	known	1.00	256	0	256	0	n	1.00	245	0	245	0	n	1.00	425	0	425	0	n	1.00	231	0	231	0	n	1.00	337	1	337	1	n	0.99	231	2	231	2	y	1.00	367	1	367	1	n	1.00	208	0	208	0	n	0.99	187	2	187	2	y	1.00	286	0	286	0	n	1.00	216	0	216	0	n	1.00	295	1	295	1	n	ENSMUSG00000015575.16	Atp6v0e	chr17	protein_coding	ATPase, H+ transporting, lysosomal V0 subunit E
known_NIR_7876	chr17	26901699;26913555	26913453;26914329	+	26901699	26914329	cassetteExon	ENSMUST00000236346.2	known	0.00	1.0	259	0;2	259	n	0.00	0.0	236	0;0	236	n	0.01	3.0	430	3;3	430	y	0.00	0.5	243	1;0	243	n	0.00	1.0	322	2;0	322	n	0.01	2.0	237	2;2	237	y	0.01	2.0	360	1;3	360	n	0.01	2.5	177	3;2	177	y	0.01	1.0	185	2;0	185	n	0.00	0.0	258	0;0	258	n	0.01	2.0	238	2;2	238	y	0.01	2.0	276	0;4	276	n	ENSMUSG00000015575.16	Atp6v0e	chr17	protein_coding	ATPase, H+ transporting, lysosomal V0 subunit E
known_NIR_7877	chr17	27000150	27002419	+	27000150	27001552	A3SS	ENSMUST00000135899.2	known	1.00	67	0	67	0	n	0.99	66	1	66	1	n	1.00	80	0	80	0	n	1.00	80	0	80	0	n	1.00	96	0	96	0	n	1.00	36	0	36	0	n	0.97	86	3	86	3	y	1.00	70	0	70	0	n	1.00	78	0	78	0	n	0.99	139	2	139	2	y	0.97	69	2	69	2	y	1.00	94	0	94	0	n	ENSMUSG00000024191.16	Bnip1	chr17	protein_coding	BCL2/adenovirus E1B interacting protein 1
known_NIR_7878	chr17	27000150;27001605	27001552;27002419	+	27000150	27002419	cassetteExon	ENSMUST00000015725.16	known	0.00	0.0	67	0;0	67	n	0.01	1.0	66	1;1	66	n	0.00	0.0	80	0;0	80	n	0.00	0.0	80	0;0	80	n	0.00	0.0	96	0;0	96	n	0.00	0.0	36	0;0	36	n	0.03	3.0	86	3;3	86	y	0.00	0.0	70	0;0	70	n	0.00	0.0	78	0;0	78	n	0.01	2.0	139	2;2	139	y	0.01	1.0	69	2;0	69	n	0.00	0.0	94	0;0	94	n	ENSMUSG00000024191.16	Bnip1	chr17	protein_coding	BCL2/adenovirus E1B interacting protein 1
known_NIR_7879	chr17	27002511	27008669	+	27002511;27005762	27005671;27008669	ES	ENSMUST00000015725.16	known	0.03	2	72.0	2	72;72	y	0.08	6	69.0	6	67;71	y	0.12	9	69.0	9	53;85	y	0.08	6	66.0	6	56;76	y	0.10	11	103.5	11	97;110	y	0.15	7	38.5	7	32;45	y	0.13	11	70.5	11	54;87	y	0.19	13	56.0	13	51;61	y	0.14	13	80.0	13	68;92	y	0.16	19	103.5	19	99;108	y	0.07	6	79.0	6	61;97	y	0.08	7	80.5	7	79;82	y	ENSMUSG00000024191.16	Bnip1	chr17	protein_coding	BCL2/adenovirus E1B interacting protein 1
known_NIR_7880	chr17	27002511	27008669	+	27005762	27008669	5pMXE	ENSMUST00000147516.2	known	0.03	2	72	2	72	y	0.08	6	71	6	71	y	0.10	9	85	9	85	y	0.07	6	76	6	76	y	0.09	11	110	11	110	y	0.13	7	45	7	45	y	0.11	11	87	11	87	y	0.18	13	61	13	61	y	0.12	13	92	13	92	y	0.15	19	108	19	108	y	0.06	6	97	6	97	y	0.08	7	82	7	82	y	ENSMUSG00000024191.16	Bnip1	chr17	protein_coding	BCL2/adenovirus E1B interacting protein 1
known_NIR_7881	chr17	27008770;27008938	27008894;27009900	+	27008770	27009900	cassetteExon	ENSMUST00000015725.16	known	0.01	0.5	84	1;0	84	n	0.04	2.5	62	2;3	62	y	0.01	0.5	69	0;1	69	n	0.00	0.0	48	0;0	48	n	0.03	3.0	93	3;3	93	y	0.00	0.0	41	0;0	41	n	0.00	0.0	75	0;0	75	n	0.01	0.5	52	0;1	52	n	0.04	3.0	75	3;3	75	y	0.00	0.0	113	0;0	113	n	0.03	3.0	104	0;6	104	n	0.03	2.5	91	1;4	91	n	ENSMUSG00000024191.16	Bnip1	chr17	protein_coding	BCL2/adenovirus E1B interacting protein 1
known_NIR_7882	chr17	27153342	27153406	+	27153342	27153428	A3SS	ENSMUST00000073724.7	known	0.05	2	41	2	41	y	0.00	0	21	0	21	n	0.12	6	43	6	43	y	0.00	0	37	0	37	n	0.04	2	50	2	50	y	0.11	3	24	3	24	y	0.00	0	39	0	39	n	0.03	1	35	1	35	n	0.08	3	33	3	33	y	0.06	4	58	4	58	y	0.06	2	32	2	32	y	0.06	3	45	3	45	y	ENSMUSG00000024193.9	Phf1	chr17	protein_coding	PHD finger protein 1
known_NIR_7883	chr17	27153700	27154039	+	27153700	27154028	A3SS	ENSMUST00000073724.7	known	0.05	2	39	2	39	y	0.00	0	24	0	24	n	0.00	0	31	0	31	n	0.06	2	30	2	30	y	0.02	1	51	1	51	n	0.07	1	13	1	13	n	0.02	1	41	1	41	n	0.07	2	27	2	27	y	0.09	3	31	3	31	y	0.03	1	34	1	34	n	0.03	1	29	1	29	n	0.09	3	31	3	31	y	ENSMUSG00000024193.9	Phf1	chr17	protein_coding	PHD finger protein 1
known_NIR_7884	chr17	27155365	27155497	+	27155365	27155486	A3SS	ENSMUST00000073724.7	known	0.69	9	4	9	4	y	0.63	12	7	12	7	y	0.37	7	12	7	12	y	0.36	10	18	10	18	y	0.37	11	19	11	19	y	0.47	7	8	7	8	y	0.62	16	10	16	10	y	0.80	8	2	8	2	y	0.77	10	3	10	3	y	0.54	22	19	22	19	y	0.44	8	10	8	10	y	0.29	7	17	7	17	y	ENSMUSG00000024193.9	Phf1	chr17	protein_coding	PHD finger protein 1
known_NIR_7885	chr17	27155839	27156031	+	27155839	27156028	A3SS	ENSMUST00000073724.7	known	0.03	2	61	2	61	y	0.04	2	44	2	44	y	0.00	0	73	0	73	n	0.10	6	53	6	53	y	0.08	7	81	7	81	y	0.00	0	31	0	31	n	0.00	0	65	0	65	n	0.00	0	35	0	35	n	0.07	3	38	3	38	y	0.08	7	78	7	78	y	0.02	1	62	1	62	n	0.03	2	64	2	64	y	ENSMUSG00000024193.9	Phf1	chr17	protein_coding	PHD finger protein 1
known_NIR_7886	chr17	27157065	27157858	-	27157760	27157858	A3SS&ES	ENSMUST00000235951.2	known	0.00	0	242	0	242	n	0.00	0	245	0	245	n	0.00	0	173	0	173	n	0.00	0	253	0	253	n	0.00	0	277	0	277	n	0.00	0	122	0	122	n	0.00	0	304	0	304	n	0.00	0	130	0	130	n	0.00	0	220	0	220	n	0.00	0	304	0	304	n	0.01	2	218	2	218	y	0.00	0	255	0	255	n	ENSMUSG00000024194.17	Cuta	chr17	protein_coding	cutA divalent cation tolerance homolog
known_NIR_7887	chr17	27157441	27157701	-	27157441	27157546	A5SS	ENSMUST00000235951.2	known	0.00	0	260	0	260	n	0.02	5	281	5	281	y	0.00	0	198	0	198	n	0.01	2	229	2	229	y	0.01	2	277	2	277	y	0.01	1	128	1	128	n	0.00	0	312	0	312	n	0.02	2	119	2	119	y	0.00	0	212	0	212	n	0.00	0	341	0	341	n	0.00	1	291	1	291	n	0.00	0	290	0	290	n	ENSMUSG00000024194.17	Cuta	chr17	protein_coding	cutA divalent cation tolerance homolog
known_NIR_7888	chr17	27157441	27157701	-	27157441;27157591	27157546;27157701	ES	ENSMUST00000025027.10	known	0.00	0	213.0	0	260;166	n	0.02	5	225.0	5	281;169	y	0.00	0	165.0	0	198;132	n	0.01	2	198.5	2	229;168	y	0.01	2	234.5	2	277;192	y	0.01	1	107.0	1	128;86	n	0.00	0	259.0	0	312;206	n	0.02	2	93.0	2	119;67	y	0.00	0	169.5	0	212;127	n	0.00	0	277.0	0	341;213	n	0.00	1	236.0	1	291;181	n	0.00	0	250.5	0	290;211	n	ENSMUSG00000024194.17	Cuta	chr17	protein_coding	cutA divalent cation tolerance homolog
known_NIR_7889	chr17	27157441	27157701	-	27157441;27157623	27157546;27157701	ES	ENSMUST00000236888.2	known	0.00	0	134.0	0	260;8	n	0.03	5	144.0	5	281;7	y	0.00	0	101.5	0	198;5	n	0.02	2	118.5	2	229;8	y	0.01	2	139.5	2	277;2	y	0.02	1	64.5	1	128;1	n	0.00	0	162.0	0	312;12	n	0.03	2	63.0	2	119;7	y	0.00	0	108.0	0	212;4	n	0.00	0	176.0	0	341;11	n	0.01	1	152.0	1	291;13	n	0.00	0	148.5	0	290;7	n	ENSMUSG00000024194.17	Cuta	chr17	protein_coding	cutA divalent cation tolerance homolog
known_NIR_7890	chr17	27157441	27157701	-	27157591	27157701	A3SS	ENSMUST00000236744.2	known	0.00	0	166	0	166	n	0.03	5	169	5	169	y	0.00	0	132	0	132	n	0.01	2	168	2	168	y	0.01	2	192	2	192	y	0.01	1	86	1	86	n	0.00	0	206	0	206	n	0.03	2	67	2	67	y	0.00	0	127	0	127	n	0.00	0	213	0	213	n	0.01	1	181	1	181	n	0.00	0	211	0	211	n	ENSMUSG00000024194.17	Cuta	chr17	protein_coding	cutA divalent cation tolerance homolog
known_NIR_7891	chr17	27157623	27157701	-	27157591	27157701	A3SS	ENSMUST00000236744.2	known	0.05	8	166	8	166	y	0.04	7	169	7	169	y	0.04	5	132	5	132	y	0.05	8	168	8	168	y	0.01	2	192	2	192	y	0.01	1	86	1	86	n	0.06	12	206	12	206	y	0.09	7	67	7	67	y	0.03	4	127	4	127	y	0.05	11	213	11	213	y	0.07	13	181	13	181	y	0.03	7	211	7	211	y	ENSMUSG00000024194.17	Cuta	chr17	protein_coding	cutA divalent cation tolerance homolog
known_NIR_7892	chr17	27158066	27158425	-	27158066	27158291	5pMXE	ENSMUST00000235951.2	known	0.01	1	83	1	83	n	0.02	2	88	2	88	y	0.11	7	56	7	56	y	0.00	0	105	0	105	n	0.09	9	95	9	95	y	0.22	15	52	15	52	y	0.05	7	125	7	125	y	0.05	3	57	3	57	y	0.02	2	113	2	113	y	0.05	7	134	7	134	y	0.03	3	116	3	116	y	0.07	8	108	8	108	y	ENSMUSG00000024194.17	Cuta	chr17	protein_coding	cutA divalent cation tolerance homolog
known_NIR_7893	chr17	27158066	27158425	-	27158066;27158342	27158291;27158425	ES	ENSMUST00000025027.10	known	0.02	1	58.5	1	83;34	n	0.03	2	60.0	2	88;32	y	0.15	7	41.0	7	56;26	y	0.00	0	71.0	0	105;37	n	0.12	9	68.0	9	95;41	y	0.29	15	37.5	15	52;23	y	0.08	7	84.0	7	125;43	y	0.07	3	42.0	3	57;27	y	0.02	2	80.5	2	113;48	y	0.07	7	95.0	7	134;56	y	0.04	3	81.5	3	116;47	y	0.09	8	78.5	8	108;49	y	ENSMUSG00000024194.17	Cuta	chr17	protein_coding	cutA divalent cation tolerance homolog
known_NIR_7894	chr17	27158066	27158425	-	27158342	27158425	A3SS	ENSMUST00000235442.2	known	0.03	1	34	1	34	n	0.06	2	32	2	32	y	0.21	7	26	7	26	y	0.00	0	37	0	37	n	0.18	9	41	9	41	y	0.39	15	23	15	23	y	0.14	7	43	7	43	y	0.10	3	27	3	27	y	0.04	2	48	2	48	y	0.11	7	56	7	56	y	0.06	3	47	3	47	y	0.14	8	49	8	49	y	ENSMUSG00000024194.17	Cuta	chr17	protein_coding	cutA divalent cation tolerance homolog
known_NIR_7895	chr17	27158169	27158291	-	27158066	27158291	A3SS	ENSMUST00000235951.2	known	0.08	7	83	7	83	y	0.08	8	88	8	88	y	0.05	3	56	3	56	y	0.00	0	105	0	105	n	0.09	9	95	9	95	y	0.00	0	52	0	52	n	0.09	13	125	13	125	y	0.07	4	57	4	57	y	0.09	11	113	11	113	y	0.07	10	134	10	134	y	0.06	8	116	8	116	y	0.11	13	108	13	108	y	ENSMUSG00000024194.17	Cuta	chr17	protein_coding	cutA divalent cation tolerance homolog
known_NIR_7896	chr17	27237144	27244311	+	27237144	27241225	3pMXE	ENSMUST00000142141.3	known	0.18	13	58	13	58	y	0.07	5	63	5	63	y	0.22	7	25	7	25	y	0.05	2	40	2	40	y	0.19	17	74	17	74	y	0.07	2	25	2	25	y	0.12	9	67	9	67	y	0.18	6	28	6	28	y	0.07	4	56	4	56	y	0.03	3	92	3	92	y	0.01	1	66	1	66	n	0.04	3	71	3	71	y	ENSMUSG00000048731.16	Ggnbp1	chr17	protein_coding	gametogenetin binding protein 1
known_NIR_7897	chr17	27237144;27241314	27241225;27244311	+	27237144	27244311	cassetteExon	ENSMUST00000122106.9	known	0.75	39.0	13	58;20	13	y	0.88	37.5	5	63;12	5	y	0.70	16.0	7	25;7	7	y	0.93	27.5	2	40;15	2	y	0.76	53.0	17	74;32	17	y	0.89	16.5	2	25;8	2	y	0.84	47.5	9	67;28	9	y	0.76	18.5	6	28;9	6	y	0.92	46.5	4	56;37	4	y	0.95	63.0	3	92;34	3	y	0.98	43.5	1	66;21	1	n	0.94	51.5	3	71;32	3	y	ENSMUSG00000048731.16	Ggnbp1	chr17	protein_coding	gametogenetin binding protein 1
known_NIR_7898	chr17	27241846	27244767	-	27241851	27244767	A3SS	ENSMUST00000078691.12	known	0.00	0	38	0	38	n	0.00	0	26	0	26	n	0.00	0	57	0	57	n	0.00	0	51	0	51	n	0.00	0	58	0	58	n	0.00	0	24	0	24	n	0.00	0	38	0	38	n	0.00	0	28	0	28	n	0.05	2	42	2	42	y	0.00	0	73	0	73	n	0.00	0	52	0	52	n	0.00	0	38	0	38	n	ENSMUSG00000057789.15	Bak1	chr17	protein_coding	BCL2-antagonist/killer 1
known_NIR_7899	chr17	27244433	27247807	+	27244433	27249650	A3SS	ENSMUST00000122106.9	known	0.71	17	7	17	7	y	0.91	31	3	31	3	y	0.95	21	1	21	1	n	1.00	17	0	17	0	n	0.90	28	3	28	3	y	1.00	9	0	9	0	n	0.90	36	4	36	4	y	1.00	13	0	13	0	n	0.96	24	1	24	1	n	0.93	27	2	27	2	y	0.89	25	3	25	3	y	0.88	28	4	28	4	y	ENSMUSG00000048731.16	Ggnbp1	chr17	protein_coding	gametogenetin binding protein 1
known_NIR_7900	chr17	27244433	27249650	+	27244433;27248920	27247807;27249650	ES	ENSMUST00000133257.9	known	0.26	7	20.0	7	17;23	y	0.10	3	28.0	3	31;25	y	0.05	1	18.0	1	21;15	n	0.00	0	15.5	0	17;14	n	0.08	3	33.5	3	28;39	y	0.00	0	8.5	0	9;8	n	0.11	4	33.0	4	36;30	y	0.00	0	17.0	0	13;21	n	0.03	1	30.0	1	24;36	n	0.05	2	36.5	2	27;46	y	0.11	3	24.0	3	25;23	y	0.12	4	30.5	4	28;33	y	ENSMUSG00000117819.2	Gm50253	chr17	protein_coding	predicted gene, 50253
known_NIR_7901	chr17	27248920	27249650	+	27244433	27249650	A5SS	ENSMUST00000122106.9	known	0.77	23	7	23	7	y	0.89	25	3	25	3	y	0.94	15	1	15	1	n	1.00	14	0	14	0	n	0.93	39	3	39	3	y	1.00	8	0	8	0	n	0.88	30	4	30	4	y	1.00	21	0	21	0	n	0.97	36	1	36	1	n	0.96	46	2	46	2	y	0.88	23	3	23	3	y	0.89	33	4	33	4	y	ENSMUSG00000048731.16	Ggnbp1	chr17	protein_coding	gametogenetin binding protein 1
known_NIR_7902	chr17	27775683	27778507	+	27775685	27778507	A5SS	ENSMUST00000232265.2	known	0.04	2	44	2	44	y	0.00	0	43	0	43	n	0.06	2	30	2	30	y	0.00	0	26	0	26	n	0.00	0	47	0	47	n	0.04	1	26	1	26	n	0.04	2	52	2	52	y	0.08	2	22	2	22	y	0.08	3	35	3	35	y	0.00	0	71	0	71	n	0.03	1	34	1	34	n	0.00	0	44	0	44	n	ENSMUSG00000046711.17	Hmga1	chr17	protein_coding	high mobility group AT-hook 1
known_NIR_7903	chr17	27775683	27778507	+	27776040	27778507	A5SS&ES	ENSMUST00000118599.9	known	0.29	2	5	2	5	n	0.00	0	7	0	7	n	0.18	2	9	2	9	y	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.12	1	7	1	7	n	0.12	2	14	2	14	y	0.33	2	4	2	4	n	0.27	3	8	3	8	y	0.00	0	7	0	7	n	0.10	1	9	1	9	n	0.00	0	8	0	8	n	ENSMUSG00000046711.17	Hmga1	chr17	protein_coding	high mobility group AT-hook 1
known_NIR_7904	chr17	27775685	27778507	+	27775685;27776040	27775926;27778507	ES	ENSMUST00000118599.9	known	0.92	44	4.0	44	3;5	y	0.92	43	3.5	43	0;7	n	0.82	30	6.5	30	4;9	y	0.85	26	4.5	26	2;7	y	0.90	47	5.5	47	0;11	n	0.87	26	4.0	26	1;7	n	0.87	52	7.5	52	1;14	n	0.90	22	2.5	22	1;4	n	0.90	35	4.0	35	0;8	n	0.93	71	5.5	71	4;7	y	0.85	34	6.0	34	3;9	y	0.89	44	5.5	44	3;8	y	ENSMUSG00000046711.17	Hmga1	chr17	protein_coding	high mobility group AT-hook 1
known_NIR_7905	chr17	27775685	27778507	+	27776040	27778507	A5SS	ENSMUST00000231874.2	known	0.90	44	5	44	5	y	0.86	43	7	43	7	y	0.77	30	9	30	9	y	0.79	26	7	26	7	y	0.81	47	11	47	11	y	0.79	26	7	26	7	y	0.79	52	14	52	14	y	0.85	22	4	22	4	y	0.81	35	8	35	8	y	0.91	71	7	71	7	y	0.79	34	9	34	9	y	0.85	44	8	44	8	y	ENSMUSG00000046711.17	Hmga1	chr17	protein_coding	high mobility group AT-hook 1
known_NIR_7906	chr17	27775723	27778507	+	27775683	27778507	A5SS	ENSMUST00000232013.2	known	0.87	13	2	13	2	y	1.00	16	0	16	0	n	0.83	10	2	10	2	y	1.00	13	0	13	0	n	1.00	11	0	11	0	n	0.94	15	1	15	1	n	0.83	10	2	10	2	y	0.80	8	2	8	2	y	0.75	9	3	9	3	y	1.00	16	0	16	0	n	0.92	11	1	11	1	n	1.00	9	0	9	0	n	ENSMUSG00000046711.17	Hmga1	chr17	protein_coding	high mobility group AT-hook 1
known_NIR_7907	chr17	27775723	27778507	+	27775685	27778507	A5SS	ENSMUST00000232265.2	known	0.23	13	44	13	44	y	0.27	16	43	16	43	y	0.25	10	30	10	30	y	0.33	13	26	13	26	y	0.19	11	47	11	47	y	0.37	15	26	15	26	y	0.16	10	52	10	52	y	0.27	8	22	8	22	y	0.20	9	35	9	35	y	0.18	16	71	16	71	y	0.24	11	34	11	34	y	0.17	9	44	9	44	y	ENSMUSG00000046711.17	Hmga1	chr17	protein_coding	high mobility group AT-hook 1
known_NIR_7908	chr17	27775723	27778507	+	27776040	27778507	A5SS&ES	ENSMUST00000118599.9	known	0.72	13	5	13	5	y	0.70	16	7	16	7	y	0.53	10	9	10	9	y	0.65	13	7	13	7	y	0.50	11	11	11	11	y	0.68	15	7	15	7	y	0.42	10	14	10	14	y	0.67	8	4	8	4	y	0.53	9	8	9	8	y	0.70	16	7	16	7	y	0.55	11	9	11	9	y	0.53	9	8	9	8	y	ENSMUSG00000046711.17	Hmga1	chr17	protein_coding	high mobility group AT-hook 1
known_NIR_7909	chr17	27778644	27779902	+	27778677	27779902	A5SS	ENSMUST00000118599.9	known	0.47	20	23	20	23	y	0.56	36	28	36	28	y	0.72	33	13	33	13	y	0.58	38	27	38	27	y	0.66	62	32	62	32	y	0.61	25	16	25	16	y	0.65	51	27	51	27	y	0.69	36	16	36	16	y	0.74	25	9	25	9	y	0.59	47	33	47	33	y	0.62	34	21	34	21	y	0.75	44	15	44	15	y	ENSMUSG00000046711.17	Hmga1	chr17	protein_coding	high mobility group AT-hook 1
known_NIR_7910	chr17	27780485	27781415	+	27780485	27781412	A3SS	ENSMUST00000118599.9	known	0.09	5	51	5	51	y	0.04	3	65	3	65	y	0.04	2	54	2	54	y	0.04	3	68	3	68	y	0.00	0	80	0	80	n	0.11	3	24	3	24	y	0.05	5	96	5	96	y	0.05	2	40	2	40	y	0.07	4	54	4	54	y	0.01	1	72	1	72	n	0.04	3	67	3	67	y	0.03	2	61	2	61	y	ENSMUSG00000046711.17	Hmga1	chr17	protein_coding	high mobility group AT-hook 1
known_NIR_7911	chr17	27783189	27783359	-	27783228	27783359	A3SS	ENSMUST00000154473.9	known	0.00	0	21	0	21	n	0.14	3	18	3	18	y	0.22	5	18	5	18	y	0.19	3	13	3	13	y	0.06	2	34	2	34	y	0.05	1	20	1	20	n	0.12	3	21	3	21	y	0.00	0	9	0	9	n	0.13	2	13	2	13	y	0.08	2	22	2	22	y	0.07	1	14	1	14	n	0.00	0	13	0	13	n	ENSMUSG00000062753.15	AI413582	chr17	protein_coding	expressed sequence AI413582
known_NIR_7912	chr17	27815808	27841565	-	27815808	27842061	A5SS	ENSMUST00000025050.13	known	0.00	0	51	0	51	n	0.00	0	36	0	36	n	0.01	1	81	1	81	n	0.03	2	56	2	56	y	0.05	4	75	4	75	y	0.00	0	32	0	32	n	0.02	1	51	1	51	n	0.05	2	36	2	36	y	0.02	1	52	1	52	n	0.01	1	66	1	66	n	0.00	0	51	0	51	n	0.05	2	38	2	38	y	ENSMUSG00000024213.15	Nudt3	chr17	protein_coding	nudix (nucleotide diphosphate linked moiety X)-type motif 3
known_NIR_7913	chr17	27849480	27851253	-	27849480;27850229	27850174;27851253	ES	ENSMUST00000114882.9	known	0.00	0	1254.0	0	1015;1493	n	0.00	4	1390.5	4	1108;1673	y	0.00	0	1617.0	0	1300;1934	n	0.00	0	998.5	0	824;1173	n	0.00	0	1503.0	0	1227;1779	n	0.00	0	951.0	0	737;1165	n	0.00	0	1580.5	0	1273;1888	n	0.00	0	911.0	0	752;1070	n	0.00	0	968.0	0	778;1158	n	0.00	0	1444.0	0	1167;1721	n	0.00	0	1271.5	0	1028;1515	n	0.00	0	1290.0	0	1036;1544	n	ENSMUSG00000052146.17	Rps10	chr17	protein_coding	ribosomal protein S10
known_NIR_7914	chr17	27849480	27851253	-	27850229	27851253	A3SS&ES	ENSMUST00000233710.2	known	0.00	0	1493	0	1493	n	0.00	4	1673	4	1673	y	0.00	0	1934	0	1934	n	0.00	0	1173	0	1173	n	0.00	0	1779	0	1779	n	0.00	0	1165	0	1165	n	0.00	0	1888	0	1888	n	0.00	0	1070	0	1070	n	0.00	0	1158	0	1158	n	0.00	0	1721	0	1721	n	0.00	0	1515	0	1515	n	0.00	0	1544	0	1544	n	ENSMUSG00000117338.2	Gm49804	chr17	protein_coding	predicted gene, 49804
known_NIR_7915	chr17	27853449	27853718	-	27853449	27854178	A5SS	ENSMUST00000233710.2	known	0.00	0	979	0	979	n	0.00	3	992	3	992	y	0.00	1	1414	1	1414	n	0.00	0	919	0	919	n	0.00	2	1359	2	1359	y	0.00	3	813	3	813	y	0.00	5	1483	5	1483	y	0.00	0	778	0	778	n	0.00	0	812	0	812	n	0.00	0	1165	0	1165	n	0.00	2	1004	2	1004	y	0.00	0	1110	0	1110	n	ENSMUSG00000117338.2	Gm49804	chr17	protein_coding	predicted gene, 49804
known_NIR_7916	chr17	27853449	27853718	-	27853449	27855539	A5SS	ENSMUST00000114881.9	known	0.00	0	3	0	3	n	0.38	3	5	3	5	n	0.05	1	18	1	18	n	0.00	0	1	0	1	n	0.67	2	1	2	1	n	0.43	3	4	3	4	n	0.36	5	9	5	9	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	n	-	-	-	-	-	-	ENSMUSG00000052146.17	Rps10	chr17	protein_coding	ribosomal protein S10
known_NIR_7917	chr17	27853449	27855539	-	27853449	27854178	5pMXE	ENSMUST00000233710.2	known	0.00	3	979	3	979	y	0.01	5	992	5	992	y	0.01	18	1414	18	1414	y	0.00	1	919	1	919	n	0.00	1	1359	1	1359	n	0.00	4	813	4	813	y	0.01	9	1483	9	1483	y	0.01	5	778	5	778	y	0.00	2	812	2	812	y	0.00	0	1165	0	1165	n	0.00	0	1004	0	1004	n	0.00	0	1110	0	1110	n	ENSMUSG00000117338.2	Gm49804	chr17	protein_coding	predicted gene, 49804
known_NIR_7918	chr17	27972969	27987110	-	27972969	27986885	A5SS	ENSMUST00000114863.10	known	0.39	113	175	113	175	y	0.38	97	155	97	155	y	0.35	146	267	146	267	y	0.37	139	235	139	235	y	0.34	170	328	170	328	y	0.52	113	105	113	105	y	0.34	152	296	152	296	y	0.41	108	157	108	157	y	0.38	97	160	97	160	y	0.33	178	359	178	359	y	0.38	111	181	111	181	y	0.30	126	290	126	290	y	ENSMUSG00000056692.14	Ilrun	chr17	protein_coding	inflammation and lipid regulator with UBA-like and NBR1-like domains
known_NIR_7919	chr17	27972969	28005045	-	27972969;27987213	27986885;28005045	ES	ENSMUST00000114863.10	known	0.12	34	249.0	34	175;323	y	0.09	21	207.5	21	155;260	y	0.13	55	375.5	55	267;484	y	0.13	51	347.5	51	235;460	y	0.13	67	467.5	67	328;607	y	0.13	29	194.0	29	105;283	y	0.10	46	401.5	46	296;507	y	0.11	28	229.5	28	157;302	y	0.10	26	225.0	26	160;290	y	0.08	41	456.5	41	359;554	y	0.12	36	255.0	36	181;329	y	0.09	39	391.0	39	290;492	y	ENSMUSG00000056692.14	Ilrun	chr17	protein_coding	inflammation and lipid regulator with UBA-like and NBR1-like domains
known_NIR_7920	chr17	27972969	28005045	-	27972969;27987213	27987110;28005045	ES	ENSMUST00000114859.9	known	0.13	34	218.0	34	113;323	y	0.11	21	178.5	21	97;260	y	0.15	55	315.0	55	146;484	y	0.15	51	299.5	51	139;460	y	0.15	67	388.5	67	170;607	y	0.13	29	198.0	29	113;283	y	0.12	46	329.5	46	152;507	y	0.12	28	205.0	28	108;302	y	0.12	26	193.5	26	97;290	y	0.10	41	366.0	41	178;554	y	0.14	36	220.0	36	111;329	y	0.11	39	309.0	39	126;492	y	ENSMUSG00000056692.14	Ilrun	chr17	protein_coding	inflammation and lipid regulator with UBA-like and NBR1-like domains
known_NIR_7921	chr17	27972969	28005045	-	27987213	28005045	3pMXE	ENSMUST00000075076.6	known	0.10	34	323	34	323	y	0.07	21	260	21	260	y	0.10	55	484	55	484	y	0.10	51	460	51	460	y	0.10	67	607	67	607	y	0.09	29	283	29	283	y	0.08	46	507	46	507	y	0.08	28	302	28	302	y	0.08	26	290	26	290	y	0.07	41	554	41	554	y	0.10	36	329	36	329	y	0.07	39	492	39	492	y	ENSMUSG00000056692.14	Ilrun	chr17	protein_coding	inflammation and lipid regulator with UBA-like and NBR1-like domains
known_NIR_7922	chr17	28059780	28061244	+	28059480	28061244	A5SS	ENSMUST00000232873.2	known	0.00	0	123	0	123	n	0.00	0	115	0	115	n	0.01	1	175	1	175	n	0.00	0	143	0	143	n	0.00	0	173	0	173	n	0.05	3	59	3	59	y	0.00	0	188	0	188	n	0.00	0	70	0	70	n	0.00	0	123	0	123	n	0.00	0	158	0	158	n	0.00	0	160	0	160	n	0.00	0	173	0	173	n	ENSMUSG00000024217.11	Snrpc	chr17	protein_coding	U1 small nuclear ribonucleoprotein C
known_NIR_7923	chr17	28075643	28095637	+	28075768	28095637	A5SS	ENSMUST00000114849.3	known	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	15	0	15	n	0.17	2	10	2	10	y	0.00	0	20	0	20	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	ENSMUSG00000039512.13	Uhrf1bp1	chr17	protein_coding	UHRF1 (ICBP90) binding protein 1
known_NIR_7924	chr17	28076278	28095637	+	28075768	28095637	A5SS	ENSMUST00000114849.3	known	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.21	4	15	4	15	y	0.00	0	10	0	10	n	0.09	2	20	2	20	y	0.33	5	10	5	10	y	0.40	4	6	4	6	y	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.08	1	12	1	12	n	0.00	0	9	0	9	n	ENSMUSG00000039512.13	Uhrf1bp1	chr17	protein_coding	UHRF1 (ICBP90) binding protein 1
known_NIR_7925	chr17	28195691	28204040	+	28195691;28197463	28197401;28204040	ES	ENSMUST00000114842.9	known	0.91	5	0.5	5	0;1	n	0.80	4	1.0	4	2;0	n	0.50	4	4.0	4	4;4	y	0.88	11	1.5	11	2;1	n	0.83	5	1.0	5	2;0	n	0.40	2	3.0	2	4;2	n	0.86	6	1.0	6	2;0	n	0.74	7	2.5	7	3;2	y	0.00	0	0.5	0	0;1	n	0.56	5	4.0	5	3;5	y	0.00	0	1.5	0	2;1	n	0.56	7	5.5	7	6;5	y	ENSMUSG00000024219.17	Anks1	chr17	protein_coding	ankyrin repeat and SAM domain containing 1
known_NIR_7926	chr17	28277434	28278268	+	28277434	28277722	A3SS	ENSMUST00000232769.2	known	1.00	30	0	30	0	n	0.91	20	2	20	2	y	0.86	24	4	24	4	y	1.00	29	0	29	0	n	0.90	28	3	28	3	y	0.83	10	2	10	2	y	0.96	25	1	25	1	n	1.00	15	0	15	0	n	1.00	17	0	17	0	n	1.00	36	0	36	0	n	1.00	20	0	20	0	n	0.93	27	2	27	2	y	ENSMUSG00000024219.17	Anks1	chr17	protein_coding	ankyrin repeat and SAM domain containing 1
known_NIR_7927	chr17	28277434;28277820	28277722;28278268	+	28277434	28278268	cassetteExon	ENSMUST00000114842.9	known	0.00	0.0	30	0;0	30	n	0.05	1.0	20	2;0	20	n	0.13	3.5	24	4;3	24	y	0.02	0.5	29	0;1	29	n	0.10	3.0	28	3;3	28	y	0.09	1.0	10	2;0	10	n	0.06	1.5	25	1;2	25	n	0.00	0.0	15	0;0	15	n	0.00	0.0	17	0;0	17	n	0.03	1.0	36	0;2	36	n	0.05	1.0	20	0;2	20	n	0.07	2.0	27	2;2	27	y	ENSMUSG00000024219.17	Anks1	chr17	protein_coding	ankyrin repeat and SAM domain containing 1
known_NIR_7928	chr17	28396389	28408771	+	28396499	28408771	A5SS	ENSMUST00000073534.10	known	0.00	0	31	0	31	n	0.00	0	22	0	22	n	0.00	0	41	0	41	n	0.00	0	38	0	38	n	0.06	3	48	3	48	y	0.03	1	28	1	28	n	0.08	3	35	3	35	y	0.03	1	34	1	34	n	0.04	1	27	1	27	n	0.05	2	37	2	37	y	0.04	1	25	1	25	n	0.00	0	38	0	38	n	ENSMUSG00000024220.15	Zfp523	chr17	protein_coding	zinc finger protein 523
known_NIR_7929	chr17	28414199	28416725	+	28414199	28416748	A3SS	ENSMUST00000073534.10	known	0.18	6	28	6	28	y	0.08	2	22	2	22	y	0.08	4	44	4	44	y	0.11	4	34	4	34	y	0.11	6	50	6	50	y	0.04	1	24	1	24	n	0.21	7	27	7	27	y	0.14	3	18	3	18	y	0.10	2	18	2	18	y	0.12	4	28	4	28	y	0.18	6	28	6	28	y	0.10	4	38	4	38	y	ENSMUSG00000024220.15	Zfp523	chr17	protein_coding	zinc finger protein 523
known_NIR_7930	chr17	28420107	28420325	+	28420107	28420235	A3SS	ENSMUST00000073534.10	known	0.10	5	44	5	44	y	0.00	0	30	0	30	n	0.09	4	40	4	40	y	0.06	2	29	2	29	y	0.05	3	56	3	56	y	0.09	2	20	2	20	y	0.13	4	27	4	27	y	0.08	2	22	2	22	y	0.18	4	18	4	18	y	0.15	7	40	7	40	y	0.03	1	39	1	39	n	0.04	2	47	2	47	y	ENSMUSG00000024220.15	Zfp523	chr17	protein_coding	zinc finger protein 523
known_NIR_7931	chr17	28420414	28421075	+	28420414	28421089	A3SS	ENSMUST00000073534.10	known	0.00	0	21	0	21	n	0.00	0	33	0	33	n	0.00	0	29	0	29	n	0.00	0	27	0	27	n	0.08	4	45	4	45	y	0.00	0	27	0	27	n	0.00	0	38	0	38	n	0.00	0	29	0	29	n	0.00	0	27	0	27	n	0.00	0	49	0	49	n	0.00	0	29	0	29	n	0.00	0	25	0	25	n	ENSMUSG00000024220.15	Zfp523	chr17	protein_coding	zinc finger protein 523
known_NIR_7932	chr17	28422234	28423429	+	28422224	28423429	A5SS	ENSMUST00000073534.10	known	0.00	0	73	0	73	n	0.02	1	64	1	64	n	0.00	0	49	0	49	n	0.02	1	46	1	46	n	0.01	1	100	1	100	n	0.00	0	44	0	44	n	0.00	0	65	0	65	n	0.00	0	40	0	40	n	0.00	0	38	0	38	n	0.00	0	85	0	85	n	0.04	2	46	2	46	y	0.02	1	58	1	58	n	ENSMUSG00000024220.15	Zfp523	chr17	protein_coding	zinc finger protein 523
known_NIR_7933	chr17	28535877	28536442	+	28535877;28536197	28536132;28536442	ES	ENSMUST00000114803.9	known	0.30	7	16.0	7	16;16	y	0.36	9	16.0	9	13;19	y	0.41	10	14.5	10	16;13	y	0.32	9	19.0	9	22;16	y	0.18	6	26.5	6	25;28	y	0.41	9	13.0	9	12;14	y	0.29	7	17.5	7	18;17	y	0.13	1	6.5	1	7;6	n	0.32	5	10.5	5	14;7	y	0.21	8	30.0	8	31;29	y	0.47	19	21.0	19	17;25	y	0.34	10	19.0	10	18;20	y	ENSMUSG00000007570.17	Fance	chr17	protein_coding	Fanconi anemia, complementation group E
known_NIR_7934	chr17	28536585	28537036	+	28536585	28537007	A3SS	ENSMUST00000114803.9	known	0.64	7	4	7	4	y	0.42	5	7	5	7	y	0.29	5	12	5	12	y	0.53	9	8	9	8	y	0.50	14	14	14	14	y	0.57	8	6	8	6	y	0.68	13	6	13	6	y	0.45	5	6	5	6	y	0.80	8	2	8	2	y	0.31	11	24	11	24	y	0.68	15	7	15	7	y	0.53	16	14	16	14	y	ENSMUSG00000007570.17	Fance	chr17	protein_coding	Fanconi anemia, complementation group E
known_NIR_7935	chr17	28537381	28537792	+	28537381	28539764	A3SS	ENSMUST00000114803.9	known	0.05	1	20	1	20	n	0.08	2	23	2	23	y	0.00	0	15	0	15	n	0.00	0	21	0	21	n	0.00	0	36	0	36	n	0.00	0	13	0	13	n	0.00	0	17	0	17	n	0.00	0	14	0	14	n	0.13	3	20	3	20	y	0.04	2	43	2	43	y	0.12	3	22	3	22	y	0.14	4	25	4	25	y	ENSMUSG00000007570.17	Fance	chr17	protein_coding	Fanconi anemia, complementation group E
known_NIR_7936	chr17	28539830	28545068	+	28539830	28541620	A3SS&ES	ENSMUST00000114803.9	known	0.08	2	23	2	23	y	0.20	4	16	4	16	y	0.00	0	15	0	15	n	0.06	1	15	1	15	n	0.03	1	31	1	31	n	0.12	1	7	1	7	n	0.04	1	27	1	27	n	0.22	2	7	2	7	n	0.14	3	19	3	19	y	0.05	2	38	2	38	y	0.07	2	26	2	26	y	0.00	0	31	0	31	n	ENSMUSG00000007570.17	Fance	chr17	protein_coding	Fanconi anemia, complementation group E
known_NIR_7937	chr17	28539830	28545068	+	28539830;28541745	28541620;28545068	ES	ENSMUST00000124870.8	known	0.13	2	13.5	2	23;4	y	0.26	4	11.5	4	16;7	y	0.00	0	10.0	0	15;5	n	0.11	1	8.5	1	15;2	n	0.05	1	19.5	1	31;8	n	0.18	1	4.5	1	7;2	n	0.06	1	16.0	1	27;5	n	0.36	2	3.5	2	7;0	n	0.18	3	13.5	3	19;8	y	0.08	2	24.5	2	38;11	y	0.10	2	17.5	2	26;9	y	0.00	0	17.0	0	31;3	n	ENSMUSG00000007570.17	Fance	chr17	protein_coding	Fanconi anemia, complementation group E
known_NIR_7938	chr17	28539830	28545126	+	28539830	28541620	A3SS&ES	ENSMUST00000124870.8	known	0.15	4	23	4	23	y	0.06	1	16	1	16	n	0.17	3	15	3	15	y	0.21	4	15	4	15	y	0.21	8	31	8	31	y	0.36	4	7	4	7	y	0.18	6	27	6	27	y	0.42	5	7	5	7	y	0.14	3	19	3	19	y	0.10	4	38	4	38	y	0.10	3	26	3	26	y	0.16	6	31	6	31	y	ENSMUSG00000007570.17	Fance	chr17	protein_coding	Fanconi anemia, complementation group E
known_NIR_7939	chr17	28539830	28545126	+	28539830;28541745	28541620;28545126	ES	ENSMUST00000114803.9	known	0.20	4	16.0	4	23;9	y	0.06	1	14.5	1	16;13	n	0.18	3	14.0	3	15;13	y	0.28	4	10.5	4	15;6	y	0.28	8	20.5	8	31;10	y	0.44	4	5.0	4	7;3	y	0.25	6	18.0	6	27;9	y	0.53	5	4.5	5	7;2	y	0.18	3	14.0	3	19;9	y	0.11	4	31.0	4	38;24	y	0.13	3	19.5	3	26;13	y	0.21	6	23.0	6	31;15	y	ENSMUSG00000007570.17	Fance	chr17	protein_coding	Fanconi anemia, complementation group E
known_NIR_7940	chr17	28541745	28542545	+	28541745	28545068	A3SS	ENSMUST00000124870.8	known	0.60	6	4	6	4	y	0.46	6	7	6	7	y	0.58	7	5	7	5	y	0.50	2	2	2	2	n	0.27	3	8	3	8	y	0.00	0	2	0	2	n	0.44	4	5	4	5	n	1.00	3	0	3	0	n	0.33	4	8	4	8	y	0.45	9	11	9	11	y	0.31	4	9	4	9	y	0.70	7	3	7	3	y	ENSMUSG00000007570.17	Fance	chr17	protein_coding	Fanconi anemia, complementation group E
known_NIR_7941	chr17	28541745	28545068	+	28541745	28545126	A3SS	ENSMUST00000114803.9	known	0.31	4	9	4	9	y	0.35	7	13	7	13	y	0.28	5	13	5	13	y	0.25	2	6	2	6	n	0.44	8	10	8	10	y	0.40	2	3	2	3	n	0.36	5	9	5	9	y	0.00	0	2	0	2	n	0.47	8	9	8	9	y	0.31	11	24	11	24	y	0.41	9	13	9	13	y	0.17	3	15	3	15	y	ENSMUSG00000007570.17	Fance	chr17	protein_coding	Fanconi anemia, complementation group E
known_NIR_7942	chr17	28541745;28542639	28542545;28545126	+	28541745	28545126	cassetteExon	ENSMUST00000114803.9	known	0.28	3.5	9	6;1	9	n	0.19	3.0	13	6;0	13	n	0.24	4.0	13	7;1	13	n	0.14	1.0	6	2;0	6	n	0.17	2.0	10	3;1	10	n	0.00	0.0	3	0;0	3	n	0.18	2.0	9	4;0	9	n	0.43	1.5	2	3;0	2	n	0.22	2.5	9	4;1	9	n	0.17	5.0	24	9;1	24	n	0.21	3.5	13	4;3	13	y	0.23	4.5	15	7;2	15	y	ENSMUSG00000007570.17	Fance	chr17	protein_coding	Fanconi anemia, complementation group E
known_NIR_7943	chr17	28547592	28547788	+	28547592	28547785	A3SS	ENSMUST00000042334.16	known	0.01	3	399	3	399	y	0.01	5	340	5	340	y	0.01	7	654	7	654	y	0.01	2	383	2	383	y	0.01	8	652	8	652	y	0.02	7	417	7	417	y	0.01	4	617	4	617	y	0.01	3	312	3	312	y	0.01	2	370	2	370	y	0.01	4	510	4	510	y	0.01	4	497	4	497	y	0.01	3	512	3	512	y	ENSMUSG00000037805.16	Rpl10a	chr17	protein_coding	ribosomal protein L10A
known_NIR_7944	chr17	28548254	28548348	+	28548021	28548348	A5SS	ENSMUST00000042334.16	known	0.01	12	1092	12	1092	y	0.01	10	1139	10	1139	y	0.02	32	1712	32	1712	y	0.01	15	1064	15	1064	y	0.01	21	1590	21	1590	y	0.01	11	1064	11	1064	y	0.01	16	1859	16	1859	y	0.01	5	977	5	977	y	0.01	10	933	10	933	y	0.01	14	1580	14	1580	y	0.01	15	1362	15	1362	y	0.01	13	1453	13	1453	y	ENSMUSG00000037805.16	Rpl10a	chr17	protein_coding	ribosomal protein L10A
known_NIR_7945	chr17	28548496	28549543	+	28548496	28549499	A3SS	ENSMUST00000042334.16	known	0.03	41	1372	41	1372	y	0.02	32	1434	32	1434	y	0.02	49	2193	49	2193	y	0.03	33	1186	33	1186	y	0.03	65	2058	65	2058	y	0.03	37	1161	37	1161	y	0.02	47	2147	47	2147	y	0.03	30	1060	30	1060	y	0.02	30	1259	30	1259	y	0.02	34	1780	34	1780	y	0.03	47	1693	47	1693	y	0.03	48	1836	48	1836	y	ENSMUSG00000037805.16	Rpl10a	chr17	protein_coding	ribosomal protein L10A
known_NIR_7946	chr17	28548496	28549568	+	28548496	28549499	A3SS	ENSMUST00000042334.16	known	0.00	0	1372	0	1372	n	0.00	0	1434	0	1434	n	0.00	0	2193	0	2193	n	0.00	4	1186	4	1186	y	0.01	11	2058	11	2058	y	0.00	0	1161	0	1161	n	0.01	15	2147	15	2147	y	0.00	0	1060	0	1060	n	0.00	0	1259	0	1259	n	0.00	0	1780	0	1780	n	0.00	0	1693	0	1693	n	0.00	0	1836	0	1836	n	ENSMUSG00000037805.16	Rpl10a	chr17	protein_coding	ribosomal protein L10A
known_NIR_7947	chr17	28548496	28549568	+	28548496	28549543	A3SS	ENSMUST00000233842.2	known	0.00	0	41	0	41	n	0.00	0	32	0	32	n	0.00	0	49	0	49	n	0.11	4	33	4	33	y	0.14	11	65	11	65	y	0.00	0	37	0	37	n	0.24	15	47	15	47	y	0.00	0	30	0	30	n	0.00	0	30	0	30	n	0.00	0	34	0	34	n	0.00	0	47	0	47	n	0.00	0	48	0	48	n	ENSMUSG00000037805.16	Rpl10a	chr17	protein_coding	ribosomal protein L10A
known_NIR_7948	chr17	28552648	28552765	-	28552653	28552765	A3SS	ENSMUST00000154873.9	known	0.15	4	23	4	23	y	0.20	8	32	8	32	y	0.09	4	41	4	41	y	0.00	0	19	0	19	n	0.08	4	46	4	46	y	0.12	3	23	3	23	y	0.00	0	35	0	35	n	0.00	0	40	0	40	n	0.07	2	26	2	26	y	0.00	0	37	0	37	n	0.09	3	29	3	29	y	0.08	4	45	4	45	y	ENSMUSG00000002249.22	Tead3	chr17	protein_coding	TEA domain family member 3
known_NIR_7949	chr17	28554470	28555485	-	28554470	28555248	5pMXE	ENSMUST00000151557.2	known	0.92	11	1	11	1	n	1.00	13	0	13	0	n	1.00	26	0	26	0	n	1.00	14	0	14	0	n	1.00	22	0	22	0	n	1.00	16	0	16	0	n	1.00	17	0	17	0	n	0.82	14	3	14	3	y	0.95	20	1	20	1	n	1.00	16	0	16	0	n	1.00	9	0	9	0	n	0.88	15	2	15	2	y	ENSMUSG00000002249.22	Tead3	chr17	protein_coding	TEA domain family member 3
known_NIR_7950	chr17	28554470	28555485	-	28555310	28555485	3pMXE	ENSMUST00000226172.2	known	1.00	11	0	11	0	n	1.00	13	0	13	0	n	0.96	26	1	26	1	n	1.00	14	0	14	0	n	1.00	22	0	22	0	n	0.94	16	1	16	1	n	0.85	17	3	17	3	y	0.93	14	1	14	1	n	0.95	20	1	20	1	n	1.00	16	0	16	0	n	1.00	9	0	9	0	n	1.00	15	0	15	0	n	ENSMUSG00000002249.22	Tead3	chr17	protein_coding	TEA domain family member 3
known_NIR_7951	chr17	28560574	28569583	-	28560574	28568965	5pMXE	ENSMUST00000154873.9	known	1.00	6	0	6	0	n	1.00	7	0	7	0	n	0.96	22	1	22	1	n	1.00	6	0	6	0	n	1.00	22	0	22	0	n	0.75	6	2	6	2	n	0.86	18	3	18	3	y	1.00	6	0	6	0	n	1.00	7	0	7	0	n	0.91	10	1	10	1	n	0.78	7	2	7	2	n	1.00	10	0	10	0	n	ENSMUSG00000002249.22	Tead3	chr17	protein_coding	TEA domain family member 3
known_NIR_7952	chr17	28653332	28656966	-	28648337	28656966	A3SS	ENSMUST00000079413.11	known	0.01	1	84	1	84	n	0.00	0	66	0	66	n	0.02	2	116	2	116	y	0.00	0	70	0	70	n	0.02	3	188	3	188	y	0.04	5	122	5	122	y	0.00	0	157	0	157	n	0.01	2	133	2	133	y	0.00	0	15	0	15	n	0.00	0	42	0	42	n	0.00	0	36	0	36	n	0.00	0	48	0	48	n	ENSMUSG00000024222.18	Fkbp5	chr17	protein_coding	FK506 binding protein 5
known_NIR_7953	chr17	28660027	28660514	-	28660027	28704926	A5SS	ENSMUST00000079413.11	known	0.20	9	37	9	37	y	0.23	7	23	7	23	y	0.14	12	73	12	73	y	0.17	5	25	5	25	y	0.14	15	93	15	93	y	0.06	6	89	6	89	y	0.37	26	44	26	44	y	0.20	12	48	12	48	y	0.14	1	6	1	6	n	0.12	2	15	2	15	y	0.15	2	11	2	11	y	0.33	8	16	8	16	y	ENSMUSG00000024222.18	Fkbp5	chr17	protein_coding	FK506 binding protein 5
known_NIR_7954	chr17	28818843	28819843	-	28818843;28819430	28819217;28819843	ES	ENSMUST00000130643.9	known	0.00	0	26.0	0	25;27	n	0.08	2	22.0	2	24;20	y	0.00	0	42.0	0	46;38	n	0.00	0	28.0	0	31;25	n	0.00	0	32.5	0	34;31	n	0.00	0	22.0	0	27;17	n	0.03	1	32.5	1	36;29	n	0.11	2	15.5	2	22;9	y	0.08	2	22.5	2	26;19	y	0.11	4	32.0	4	37;27	y	0.00	0	25.0	0	24;26	n	0.04	1	22.5	1	25;20	n	ENSMUSG00000004865.17	Srpk1	chr17	protein_coding	serine/arginine-rich protein specific kinase 1
known_NIR_7955	chr17	28818843	28819843	-	28819430	28819843	A3SS	ENSMUST00000233440.2	known	0.00	0	27	0	27	n	0.09	2	20	2	20	y	0.00	0	38	0	38	n	0.00	0	25	0	25	n	0.00	0	31	0	31	n	0.00	0	17	0	17	n	0.03	1	29	1	29	n	0.18	2	9	2	9	y	0.10	2	19	2	19	y	0.13	4	27	4	27	y	0.00	0	26	0	26	n	0.05	1	20	1	20	n	ENSMUSG00000004865.17	Srpk1	chr17	protein_coding	serine/arginine-rich protein specific kinase 1
known_NIR_7956	chr17	28839427	28840951	-	28827738	28840951	A3SS	ENSMUST00000233440.2	known	0.03	1	34	1	34	n	0.00	0	16	0	16	n	0.04	3	69	3	69	y	0.05	2	35	2	35	y	0.00	0	58	0	58	n	0.00	0	19	0	19	n	0.00	0	42	0	42	n	0.06	2	30	2	30	y	0.00	0	21	0	21	n	0.00	0	24	0	24	n	0.03	1	29	1	29	n	0.00	0	30	0	30	n	ENSMUSG00000004865.17	Srpk1	chr17	protein_coding	serine/arginine-rich protein specific kinase 1
known_NIR_7957	chr17	28910829;28911774	28911730;28932748	+	28910829	28932748	cassetteExon	ENSMUST00000004990.14	known	0.04	4.0	94	1;7	94	n	0.03	1.5	54	1;2	54	n	0.01	1.5	121	2;1	121	n	0.03	3.5	112	0;7	112	n	0.01	2.5	173	2;3	173	y	0.01	0.5	64	0;1	64	n	0.02	2.5	134	2;3	134	y	0.00	0.0	89	0;0	89	n	0.01	0.5	68	0;1	68	n	0.02	2.0	97	2;2	97	y	0.04	2.0	53	1;3	53	n	0.04	4.0	96	3;5	96	y	ENSMUSG00000053436.16	Mapk14	chr17	protein_coding	mitogen-activated protein kinase 14
known_NIR_7958	chr17	28911656	28932748	+	28910829	28932748	A5SS	ENSMUST00000004990.14	known	0.00	0	94	0	94	n	0.00	0	54	0	54	n	0.00	0	121	0	121	n	0.00	0	112	0	112	n	0.01	1	173	1	173	n	0.04	3	64	3	64	y	0.01	1	134	1	134	n	0.00	0	89	0	89	n	0.01	1	68	1	68	n	0.00	0	97	0	97	n	0.04	2	53	2	53	y	0.00	0	96	0	96	n	ENSMUSG00000053436.16	Mapk14	chr17	protein_coding	mitogen-activated protein kinase 14
known_NIR_7959	chr17	28947445	28960762	+	28947445	28947878	3pMXE	ENSMUST00000124886.9	known	0.00	0	98	0	98	n	0.00	0	66	0	66	n	0.02	3	145	3	145	y	0.00	0	177	0	177	n	0.00	0	194	0	194	n	0.00	0	107	0	107	n	0.00	0	141	0	141	n	0.00	0	102	0	102	n	0.01	1	95	1	95	n	0.00	0	144	0	144	n	0.00	0	92	0	92	n	0.00	0	133	0	133	n	ENSMUSG00000053436.16	Mapk14	chr17	protein_coding	mitogen-activated protein kinase 14
known_NIR_7960	chr17	28947949	28959654	+	28947949	28955985	A3SS&ES	ENSMUST00000114758.9	known	0.07	8	103	8	103	y	0.00	0	71	0	71	n	0.09	15	144	15	144	y	0.03	6	191	6	191	y	0.04	8	172	8	172	y	0.13	12	81	12	81	y	0.11	16	125	16	125	y	0.08	7	79	7	79	y	0.07	6	80	6	80	y	0.04	6	150	6	150	y	0.09	9	89	9	89	y	0.02	2	130	2	130	y	ENSMUSG00000053436.16	Mapk14	chr17	protein_coding	mitogen-activated protein kinase 14
known_NIR_7961	chr17	28947949;28956064	28955985;28960762	+	28947949;28959733	28959654;28960762	MXE	ENSMUST00000004990.14	known	0.94	94.0	6.0	103;85	8;4	y	0.99	71.5	1.0	71;72	0;2	n	0.91	136.5	13.0	144;129	15;11	y	0.96	172.5	7.5	191;154	6;9	y	0.95	177.0	9.5	172;182	8;11	y	0.87	83.5	12.0	81;86	12;12	y	0.90	128.0	13.5	125;131	16;11	y	0.93	88.0	7.0	79;97	7;7	y	0.92	83.0	7.0	80;86	6;8	y	0.96	148.5	6.5	150;147	6;7	y	0.91	92.0	9.0	89;95	9;9	y	0.96	132.5	5.0	130;135	2;8	y	ENSMUSG00000053436.16	Mapk14	chr17	protein_coding	mitogen-activated protein kinase 14
known_NIR_7962	chr17	28956064	28960762	+	28947445	28960762	A5SS	ENSMUST00000233095.2	known	1.00	85	0	85	0	n	1.00	72	0	72	0	n	0.98	129	3	129	3	y	1.00	154	0	154	0	n	1.00	182	0	182	0	n	1.00	86	0	86	0	n	1.00	131	0	131	0	n	1.00	97	0	97	0	n	0.99	86	1	86	1	n	1.00	147	0	147	0	n	1.00	95	0	95	0	n	1.00	135	0	135	0	n	ENSMUSG00000053436.16	Mapk14	chr17	protein_coding	mitogen-activated protein kinase 14
known_NIR_7963	chr17	28959733	28960762	+	28947445	28960762	A5SS	ENSMUST00000233095.2	known	1.00	4	0	4	0	n	1.00	2	0	2	0	n	0.79	11	3	11	3	y	1.00	9	0	9	0	n	1.00	11	0	11	0	n	1.00	12	0	12	0	n	1.00	11	0	11	0	n	1.00	7	0	7	0	n	0.89	8	1	8	1	n	1.00	7	0	7	0	n	1.00	9	0	9	0	n	1.00	8	0	8	0	n	ENSMUSG00000053436.16	Mapk14	chr17	protein_coding	mitogen-activated protein kinase 14
known_NIR_7964	chr17	29036167	29036445	+	29036167	29036460	A3SS	ENSMUST00000004985.11	known	0.06	2	31	2	31	y	0.03	1	28	1	28	n	0.07	5	69	5	69	y	0.00	0	29	0	29	n	0.07	4	55	4	55	y	0.06	2	29	2	29	y	0.12	4	30	4	30	y	0.08	3	34	3	34	y	0.04	1	24	1	24	n	0.03	1	38	1	38	n	0.00	0	21	0	21	n	0.10	3	26	3	26	y	ENSMUSG00000063952.17	Brpf3	chr17	protein_coding	bromodomain and PHD finger containing, 3
known_NIR_7965	chr17	29037612	29040040	+	29037612	29040060	A3SS	ENSMUST00000004985.11	known	0.00	0	9	0	9	n	0.00	0	18	0	18	n	0.09	5	49	5	49	y	0.19	3	13	3	13	y	0.00	0	35	0	35	n	0.03	1	32	1	32	n	0.00	0	20	0	20	n	0.00	0	23	0	23	n	0.00	0	18	0	18	n	0.00	0	17	0	17	n	0.00	0	16	0	16	n	0.00	0	25	0	25	n	ENSMUSG00000063952.17	Brpf3	chr17	protein_coding	bromodomain and PHD finger containing, 3
known_NIR_7966	chr17	29043040	29054736	+	29043040;29047415	29047318;29054736	ES	ENSMUST00000233701.2	known	0.04	1	24.0	1	48;0	n	0.11	2	15.5	2	28;3	y	0.00	0	43.0	0	86;0	n	0.07	2	26.5	2	52;1	n	0.08	3	35.0	3	68;2	y	0.00	0	26.5	0	50;3	n	0.03	1	30.0	1	56;4	n	0.00	0	28.0	0	54;2	n	0.07	1	14.0	1	26;2	n	0.08	2	24.0	2	46;2	y	0.00	0	17.0	0	34;0	n	0.09	2	20.5	2	37;4	y	ENSMUSG00000063952.17	Brpf3	chr17	protein_coding	bromodomain and PHD finger containing, 3
known_NIR_7967	chr17	29047415	29050292	+	29047415	29050288	A3SS	ENSMUST00000004985.11	known	0.00	0	21	0	21	n	0.00	0	26	0	26	n	0.04	2	46	2	46	y	0.10	3	28	3	28	y	0.00	0	33	0	33	n	0.00	0	26	0	26	n	0.00	0	39	0	39	n	0.06	2	34	2	34	y	0.00	0	14	0	14	n	0.14	5	32	5	32	y	0.00	0	30	0	30	n	0.07	2	26	2	26	y	ENSMUSG00000063952.17	Brpf3	chr17	protein_coding	bromodomain and PHD finger containing, 3
known_NIR_7968	chr17	29047415	29054736	+	29047415;29050385	29050288;29054736	ES	ENSMUST00000004985.11	known	0.00	0	28.5	0	21;36	n	0.09	3	31.5	3	26;37	y	0.00	0	69.0	0	46;92	n	0.03	1	31.0	1	28;34	n	0.03	2	68.5	2	33;104	y	0.07	3	39.5	3	26;53	y	0.07	4	49.5	4	39;60	y	0.05	2	41.0	2	34;48	y	0.09	2	20.5	2	14;27	y	0.04	2	42.5	2	32;53	y	0.00	0	32.5	0	30;35	n	0.10	4	35.0	4	26;44	y	ENSMUSG00000063952.17	Brpf3	chr17	protein_coding	bromodomain and PHD finger containing, 3
known_NIR_7969	chr17	29047415	29054736	+	29047415;29050385	29050292;29054736	ES	ENSMUST00000233709.2	known	0.00	0	18.0	0	0;36	n	0.14	3	18.5	3	0;37	n	0.00	0	47.0	0	2;92	n	0.05	1	18.5	1	3;34	n	0.04	2	52.0	2	0;104	n	0.10	3	26.5	3	0;53	n	0.12	4	30.0	4	0;60	n	0.07	2	25.0	2	2;48	y	0.13	2	13.5	2	0;27	n	0.06	2	29.0	2	5;53	y	0.00	0	17.5	0	0;35	n	0.15	4	23.0	4	2;44	y	ENSMUSG00000063952.17	Brpf3	chr17	protein_coding	bromodomain and PHD finger containing, 3
known_NIR_7970	chr17	29047415	29054736	+	29050385	29054736	A5SS&ES	ENSMUST00000233561.2	known	0.00	0	36	0	36	n	0.07	3	37	3	37	y	0.00	0	92	0	92	n	0.03	1	34	1	34	n	0.02	2	104	2	104	y	0.05	3	53	3	53	y	0.06	4	60	4	60	y	0.04	2	48	2	48	y	0.07	2	27	2	27	y	0.04	2	53	2	53	y	0.00	0	35	0	35	n	0.08	4	44	4	44	y	ENSMUSG00000063952.17	Brpf3	chr17	protein_coding	bromodomain and PHD finger containing, 3
known_NIR_7971	chr17	29171543	29180388	+	29170997	29180388	A5SS	ENSMUST00000153462.8	known	1.00	21	0	21	0	n	1.00	20	0	20	0	n	1.00	18	0	18	0	n	1.00	30	0	30	0	n	0.93	28	2	28	2	y	1.00	16	0	16	0	n	0.96	22	1	22	1	n	1.00	18	0	18	0	n	1.00	11	0	11	0	n	1.00	35	0	35	0	n	1.00	22	0	22	0	n	1.00	17	0	17	0	n	ENSMUSG00000005936.20	Kctd20	chr17	protein_coding	potassium channel tetramerisation domain containing 20
known_NIR_7972	chr17	29171543	29180388	+	29171543	29176853	A3SS&ES	ENSMUST00000232772.2	known	0.95	21	1	21	1	n	0.91	20	2	20	2	y	0.69	18	8	18	8	y	0.83	30	6	30	6	y	0.80	28	7	28	7	y	0.70	16	7	16	7	y	0.85	22	4	22	4	y	0.86	18	3	18	3	y	0.73	11	4	11	4	y	0.88	35	5	35	5	y	0.85	22	4	22	4	y	0.81	17	4	17	4	y	ENSMUSG00000005936.20	Kctd20	chr17	protein_coding	potassium channel tetramerisation domain containing 20
known_NIR_7973	chr17	29171543	29180388	+	29171543;29177031	29176853;29180388	ES	ENSMUST00000233197.2	known	0.79	21	5.5	21	1;10	n	0.83	20	4.0	20	2;6	y	0.61	18	11.5	18	8;15	y	0.80	30	7.5	30	6;9	y	0.66	28	14.5	28	7;22	y	0.64	16	9.0	16	7;11	y	0.72	22	8.5	22	4;13	y	0.69	18	8.0	18	3;13	y	0.73	11	4.0	11	4;4	y	0.82	35	7.5	35	5;10	y	0.85	22	4.0	22	4;4	y	0.71	17	7.0	17	4;10	y	ENSMUSG00000005936.20	Kctd20	chr17	protein_coding	potassium channel tetramerisation domain containing 20
known_NIR_7974	chr17	29171731	29180388	+	29171543	29180388	A5SS	ENSMUST00000118762.9	known	0.19	5	21	5	21	y	0.05	1	20	1	20	n	0.14	3	18	3	18	y	0.19	7	30	7	30	y	0.07	2	28	2	28	y	0.00	0	16	0	16	n	0.08	2	22	2	22	y	0.05	1	18	1	18	n	0.15	2	11	2	11	y	0.20	9	35	9	35	y	0.19	5	22	5	22	y	0.11	2	17	2	17	y	ENSMUSG00000005936.20	Kctd20	chr17	protein_coding	potassium channel tetramerisation domain containing 20
known_NIR_7975	chr17	29171731	29180388	+	29171731;29177031	29176853;29180388	ES	ENSMUST00000233064.2	known	0.45	5	6.0	5	2;10	y	0.25	1	3.0	1	0;6	n	0.27	3	8.0	3	1;15	n	0.56	7	5.5	7	2;9	y	0.15	2	11.0	2	0;22	n	0.00	0	6.0	0	1;11	n	0.24	2	6.5	2	0;13	n	0.12	1	7.5	1	2;13	n	0.50	2	2.0	2	0;4	n	0.62	9	5.5	9	1;10	n	0.71	5	2.0	5	0;4	n	0.25	2	6.0	2	2;10	y	ENSMUSG00000005936.20	Kctd20	chr17	protein_coding	potassium channel tetramerisation domain containing 20
known_NIR_7976	chr17	29171731	29180388	+	29177031	29180388	A5SS&ES	ENSMUST00000233197.2	known	0.33	5	10	5	10	y	0.14	1	6	1	6	n	0.17	3	15	3	15	y	0.44	7	9	7	9	y	0.08	2	22	2	22	y	0.00	0	11	0	11	n	0.13	2	13	2	13	y	0.07	1	13	1	13	n	0.33	2	4	2	4	n	0.47	9	10	9	10	y	0.56	5	4	5	4	n	0.17	2	10	2	10	y	ENSMUSG00000005936.20	Kctd20	chr17	protein_coding	potassium channel tetramerisation domain containing 20
known_NIR_7977	chr17	29177031	29180388	+	29170997	29180388	A5SS	ENSMUST00000153462.8	known	1.00	10	0	10	0	n	1.00	6	0	6	0	n	1.00	15	0	15	0	n	1.00	9	0	9	0	n	0.92	22	2	22	2	y	1.00	11	0	11	0	n	0.93	13	1	13	1	n	1.00	13	0	13	0	n	1.00	4	0	4	0	n	1.00	10	0	10	0	n	1.00	4	0	4	0	n	1.00	10	0	10	0	n	ENSMUSG00000005936.20	Kctd20	chr17	protein_coding	potassium channel tetramerisation domain containing 20
known_NIR_7978	chr17	29190831	29192019	-	29191650	29192019	A3SS	ENSMUST00000009138.13	known	0.01	1	73	1	73	n	0.00	0	70	0	70	n	0.04	4	94	4	94	y	0.00	0	92	0	92	n	0.05	8	141	8	141	y	0.08	4	47	4	47	y	0.04	4	103	4	103	y	0.00	0	64	0	64	n	0.00	0	69	0	69	n	0.04	6	131	6	131	y	0.03	3	108	3	108	y	0.04	6	138	6	138	y	ENSMUSG00000024006.18	Stk38	chr17	protein_coding	serine/threonine kinase 38
known_NIR_7979	chr17	29198279	29198588	-	29198279	29198694	A5SS	ENSMUST00000125070.9	known	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.12	1	7	1	7	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	1	0	1	n	0.25	4	12	4	12	y	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.00	0	17	0	17	n	0.00	0	14	0	14	n	0.00	0	27	0	27	n	ENSMUSG00000024006.18	Stk38	chr17	protein_coding	serine/threonine kinase 38
known_NIR_7980	chr17	29198279	29198588	-	29198279	29201006	A5SS	ENSMUST00000009138.13	known	0.00	0	66	0	66	n	0.00	0	47	0	47	n	0.01	1	89	1	89	n	0.00	0	71	0	71	n	0.00	0	87	0	87	n	0.00	0	47	0	47	n	0.05	4	72	4	72	y	0.00	0	57	0	57	n	0.00	0	53	0	53	n	0.00	0	109	0	109	n	0.00	0	56	0	56	n	0.00	0	95	0	95	n	ENSMUSG00000024006.18	Stk38	chr17	protein_coding	serine/threonine kinase 38
known_NIR_7981	chr17	29198279	29198694	-	29198279	29201006	A5SS	ENSMUST00000009138.13	known	0.14	11	66	11	66	y	0.22	13	47	13	47	y	0.07	7	89	7	89	y	0.13	11	71	11	71	y	0.15	15	87	15	87	y	0.02	1	47	1	47	n	0.14	12	72	12	72	y	0.08	5	57	5	57	y	0.20	13	53	13	53	y	0.13	17	109	17	109	y	0.20	14	56	14	56	y	0.22	27	95	27	95	y	ENSMUSG00000024006.18	Stk38	chr17	protein_coding	serine/threonine kinase 38
known_NIR_7982	chr17	29199496	29201006	-	29198279	29201006	A3SS	ENSMUST00000009138.13	known	0.20	17	66	17	66	y	0.15	8	47	8	47	y	0.07	7	89	7	89	y	0.09	7	71	7	71	y	0.06	6	87	6	87	y	0.06	3	47	3	47	y	0.12	10	72	10	72	y	0.10	6	57	6	57	y	0.16	10	53	10	53	y	0.08	10	109	10	109	y	0.14	9	56	9	56	y	0.06	6	95	6	95	y	ENSMUSG00000024006.18	Stk38	chr17	protein_coding	serine/threonine kinase 38
known_NIR_7983	chr17	29201160	29207152	-	29201160;29203174	29203051;29207152	ES	ENSMUST00000009138.13	known	0.00	0	58.0	0	45;71	n	0.00	0	42.0	0	30;54	n	0.00	0	88.0	0	69;107	n	0.03	2	69.5	2	52;87	y	0.00	0	103.5	0	73;134	n	0.00	0	43.0	0	35;51	n	0.00	0	71.0	0	80;62	n	0.00	0	59.5	0	42;77	n	0.00	0	66.5	0	61;72	n	0.00	0	100.5	0	84;117	n	0.00	0	55.5	0	43;68	n	0.00	0	98.5	0	82;115	n	ENSMUSG00000024006.18	Stk38	chr17	protein_coding	serine/threonine kinase 38
known_NIR_7984	chr17	29201160	29207152	-	29203174	29207152	3pMXE	ENSMUST00000144516.9	known	0.00	0	71	0	71	n	0.00	0	54	0	54	n	0.00	0	107	0	107	n	0.02	2	87	2	87	y	0.00	0	134	0	134	n	0.00	0	51	0	51	n	0.00	0	62	0	62	n	0.00	0	77	0	77	n	0.00	0	72	0	72	n	0.00	0	117	0	117	n	0.00	0	68	0	68	n	0.00	0	115	0	115	n	ENSMUSG00000024006.18	Stk38	chr17	protein_coding	serine/threonine kinase 38
known_NIR_7985	chr17	29207235	29218983	-	29207235	29210272	5pMXE	ENSMUST00000233864.2	known	0.00	0	77	0	77	n	0.00	0	39	0	39	n	0.00	0	96	0	96	n	0.00	0	93	0	93	n	0.02	3	123	3	123	y	0.00	0	59	0	59	n	0.00	0	71	0	71	n	0.00	0	68	0	68	n	0.00	0	57	0	57	n	0.00	0	107	0	107	n	0.00	0	72	0	72	n	0.00	0	117	0	117	n	ENSMUSG00000024006.18	Stk38	chr17	protein_coding	serine/threonine kinase 38
known_NIR_7986	chr17	29211442	29218983	-	29207235	29218983	A3SS	ENSMUST00000233510.2	known	1.00	38	0	38	0	n	1.00	29	0	29	0	n	1.00	62	0	62	0	n	1.00	69	0	69	0	n	0.96	71	3	71	3	y	1.00	25	0	25	0	n	1.00	64	0	64	0	n	1.00	55	0	55	0	n	1.00	55	0	55	0	n	1.00	80	0	80	0	n	1.00	44	0	44	0	n	1.00	68	0	68	0	n	ENSMUSG00000024006.18	Stk38	chr17	protein_coding	serine/threonine kinase 38
known_NIR_7987	chr17	29211442;29217868	29217766;29218983	-	29211442	29218983	cassetteExon	ENSMUST00000009138.13	known	0.04	1.5	38	3;0	38	n	0.00	0.0	29	0;0	29	n	0.03	2.0	62	2;2	62	y	0.01	0.5	69	1;0	69	n	0.03	2.5	71	3;2	71	y	0.06	1.5	25	0;3	25	n	0.04	2.5	64	2;3	64	y	0.03	1.5	55	1;2	55	n	0.02	1.0	55	1;1	55	n	0.02	1.5	80	0;3	80	n	0.03	1.5	44	0;3	44	n	0.00	0.0	68	0;0	68	n	ENSMUSG00000024006.18	Stk38	chr17	protein_coding	serine/threonine kinase 38
known_NIR_7988	chr17	29219118	29226685	-	29219115	29226685	A3SS	ENSMUST00000009138.13	known	0.16	5	26	5	26	y	0.16	5	27	5	27	y	0.22	13	45	13	45	y	0.25	12	36	12	36	y	0.24	14	45	14	45	y	0.24	8	26	8	26	y	0.12	4	30	4	30	y	0.30	14	33	14	33	y	0.17	6	30	6	30	y	0.19	10	43	10	43	y	0.24	9	28	9	28	y	0.20	10	40	10	40	y	ENSMUSG00000024006.18	Stk38	chr17	protein_coding	serine/threonine kinase 38
known_NIR_7989	chr17	29255422	29257448	+	29255422	29257464	A3SS	ENSMUST00000130216.3	known	0.00	0	233	0	233	n	0.00	1	211	1	211	n	0.00	0	201	0	201	n	0.00	0	205	0	205	n	0.00	0	236	0	236	n	0.00	0	110	0	110	n	0.00	0	241	0	241	n	0.00	0	128	0	128	n	0.00	0	125	0	125	n	0.01	3	219	3	219	y	0.01	2	221	2	221	y	0.00	0	218	0	218	n	ENSMUSG00000071172.14	Srsf3	chr17	protein_coding	serine and arginine-rich splicing factor 3
known_NIR_7990	chr17	29257598	29259749	+	29257598	29258428	3pMXE	ENSMUST00000144551.2	known	0.94	195	13	195	13	y	0.94	156	10	156	10	y	0.83	144	30	144	30	y	0.92	152	14	152	14	y	0.89	177	22	177	22	y	0.88	84	11	84	11	y	0.88	138	19	138	19	y	0.90	88	10	88	10	y	0.92	101	9	101	9	y	0.92	168	14	168	14	y	0.89	143	18	143	18	y	0.95	165	8	165	8	y	ENSMUSG00000071172.14	Srsf3	chr17	protein_coding	serine and arginine-rich splicing factor 3
known_NIR_7991	chr17	29257598	29259749	+	29258883	29259749	5pMXE	ENSMUST00000233105.2	known	0.96	195	8	195	8	y	0.91	156	15	156	15	y	0.88	144	19	144	19	y	0.92	152	14	152	14	y	0.90	177	19	177	19	y	0.86	84	14	84	14	y	0.88	138	19	138	19	y	0.90	88	10	88	10	y	0.90	101	11	101	11	y	0.93	168	12	168	12	y	0.92	143	13	143	13	y	0.87	165	24	165	24	y	ENSMUSG00000071172.14	Srsf3	chr17	protein_coding	serine and arginine-rich splicing factor 3
known_NIR_7992	chr17	29257598;29258883	29258428;29259749	+	29257598	29259749	cassetteExon	ENSMUST00000130216.3	known	0.05	10.5	195	13;8	195	y	0.07	12.5	156	10;15	156	y	0.15	24.5	144	30;19	144	y	0.08	14.0	152	14;14	152	y	0.10	20.5	177	22;19	177	y	0.13	12.5	84	11;14	84	y	0.12	19.0	138	19;19	138	y	0.10	10.0	88	10;10	88	y	0.09	10.0	101	9;11	101	y	0.07	13.0	168	14;12	168	y	0.10	15.5	143	18;13	143	y	0.09	16.0	165	8;24	165	y	ENSMUSG00000071172.14	Srsf3	chr17	protein_coding	serine and arginine-rich splicing factor 3
known_NIR_7993	chr17	29471292	29471528	-	29471292	29480711	A5SS	ENSMUST00000024802.10	known	0.04	2	46	2	46	y	0.00	0	30	0	30	n	0.01	1	66	1	66	n	0.00	0	24	0	24	n	0.00	0	57	0	57	n	0.00	0	36	0	36	n	0.02	1	50	1	50	n	0.03	1	33	1	33	n	0.00	0	24	0	24	n	0.03	1	33	1	33	n	0.00	0	39	0	39	n	0.05	3	53	3	53	y	ENSMUSG00000024007.16	Ppil1	chr17	protein_coding	peptidylprolyl isomerase (cyclophilin)-like 1
known_NIR_7994	chr17	29480374	29480711	-	29471292	29480711	A3SS	ENSMUST00000024802.10	known	0.00	0	46	0	46	n	0.14	5	30	5	30	y	0.10	7	66	7	66	y	0.04	1	24	1	24	n	0.10	6	57	6	57	y	0.05	2	36	2	36	y	0.06	3	50	3	50	y	0.25	11	33	11	33	y	0.04	1	24	1	24	n	0.06	2	33	2	33	y	0.05	2	39	2	39	y	0.02	1	53	1	53	n	ENSMUSG00000024007.16	Ppil1	chr17	protein_coding	peptidylprolyl isomerase (cyclophilin)-like 1
known_NIR_7995	chr17	29487976	29496831	+	29487976	29512981	A3SS	ENSMUST00000235050.2	known	1.00	67	0	67	0	n	1.00	56	0	56	0	n	0.90	90	10	90	10	y	1.00	74	0	74	0	n	0.95	99	5	99	5	y	0.98	48	1	48	1	n	1.00	85	0	85	0	n	0.97	67	2	67	2	y	0.98	41	1	41	1	n	0.93	62	5	62	5	y	0.98	83	2	83	2	y	0.95	71	4	71	4	y	ENSMUSG00000052712.18	BC004004	chr17	protein_coding	cDNA sequence BC004004
known_NIR_7996	chr17	29487976	29501034	+	29487976;29496921	29496831;29501034	ES	ENSMUST00000064709.13	known	0.06	8	119.0	8	67;171	y	0.13	15	104.0	15	56;152	y	0.18	28	130.5	28	90;171	y	0.01	1	144.5	1	74;215	n	0.04	8	194.0	8	99;289	y	0.08	7	78.5	7	48;109	y	0.05	11	194.0	11	85;303	y	0.07	7	100.0	7	67;133	y	0.06	7	105.5	7	41;170	y	0.04	6	159.5	6	62;257	y	0.05	7	144.0	7	83;205	y	0.02	3	166.5	3	71;262	y	ENSMUSG00000052712.18	BC004004	chr17	protein_coding	cDNA sequence BC004004
known_NIR_7997	chr17	29487976	29501034	+	29496921	29501034	5pMXE	ENSMUST00000234714.2	known	0.04	8	171	8	171	y	0.09	15	152	15	152	y	0.14	28	171	28	171	y	0.00	1	215	1	215	n	0.03	8	289	8	289	y	0.06	7	109	7	109	y	0.04	11	303	11	303	y	0.05	7	133	7	133	y	0.04	7	170	7	170	y	0.02	6	257	6	257	y	0.03	7	205	7	205	y	0.01	3	262	3	262	y	ENSMUSG00000052712.18	BC004004	chr17	protein_coding	cDNA sequence BC004004
known_NIR_7998	chr17	29487976;29501241	29501034;29512981	+	29487976	29512981	cassetteExon	ENSMUST00000235050.2	known	1.00	6.5	0	8;5	0	n	1.00	12.0	0	15;9	0	n	0.64	17.5	10	28;7	10	y	1.00	4.0	0	1;7	0	n	0.64	9.0	5	8;10	5	y	0.88	7.5	1	7;8	1	n	1.00	7.0	0	11;3	0	n	0.78	7.0	2	7;7	2	y	0.88	7.5	1	7;8	1	n	0.63	8.5	5	6;11	5	y	0.78	7.0	2	7;7	2	y	0.65	7.5	4	3;12	4	y	ENSMUSG00000052712.18	BC004004	chr17	protein_coding	cDNA sequence BC004004
known_NIR_7999	chr17	29493247	29496831	+	29487976	29496831	A5SS	ENSMUST00000064709.13	known	0.61	103	67	103	67	y	0.56	70	56	70	56	y	0.40	59	90	59	90	y	0.57	98	74	98	74	y	0.64	173	99	173	99	y	0.31	22	48	22	48	y	0.64	154	85	154	85	y	0.36	37	67	37	67	y	0.68	88	41	88	41	y	0.72	160	62	160	62	y	0.57	109	83	109	83	y	0.71	170	71	170	71	y	ENSMUSG00000052712.18	BC004004	chr17	protein_coding	cDNA sequence BC004004
known_NIR_8000	chr17	29501241	29501703	+	29501241	29501652	A3SS	ENSMUST00000064709.13	known	0.02	5	266	5	266	y	0.04	8	202	8	202	y	0.02	8	324	8	324	y	0.00	0	226	0	226	n	0.03	11	369	11	369	y	0.03	5	158	5	158	y	0.02	7	361	7	361	y	0.04	5	124	5	124	y	0.02	5	272	5	272	y	0.00	0	329	0	329	n	0.00	0	273	0	273	n	0.03	9	335	9	335	y	ENSMUSG00000052712.18	BC004004	chr17	protein_coding	cDNA sequence BC004004
known_NIR_8001	chr17	29501241	29512981	+	29501241	29501652	3pMXE	ENSMUST00000235074.2	known	0.02	5	266	5	266	y	0.04	9	202	9	202	y	0.02	7	324	7	324	y	0.03	7	226	7	226	y	0.03	10	369	10	369	y	0.05	8	158	8	158	y	0.01	3	361	3	361	y	0.05	7	124	7	124	y	0.03	8	272	8	272	y	0.03	11	329	11	329	y	0.03	7	273	7	273	y	0.03	12	335	12	335	y	ENSMUSG00000052712.18	BC004004	chr17	protein_coding	cDNA sequence BC004004
known_NIR_8002	chr17	29501241	29512981	+	29501241;29501865	29501652;29512981	ES	ENSMUST00000064709.13	known	0.02	5	214.5	5	266;163	y	0.04	9	199.5	9	202;197	y	0.03	7	262.0	7	324;200	y	0.03	7	196.0	7	226;166	y	0.03	10	313.0	10	369;257	y	0.05	8	142.5	8	158;127	y	0.01	3	315.5	3	361;270	y	0.05	7	126.0	7	124;128	y	0.03	8	237.5	8	272;203	y	0.04	11	283.0	11	329;237	y	0.03	7	248.0	7	273;223	y	0.04	12	287.0	12	335;239	y	ENSMUSG00000052712.18	BC004004	chr17	protein_coding	cDNA sequence BC004004
known_NIR_8003	chr17	29501241;29501865	29501703;29512981	+	29501241	29512981	cassetteExon	ENSMUST00000235114.2	known	0.94	84.0	5	5;163	5	y	0.92	102.5	9	8;197	9	y	0.94	104.0	7	8;200	7	y	0.92	83.0	7	0;166	7	n	0.93	134.0	10	11;257	10	y	0.89	66.0	8	5;127	8	y	0.98	138.5	3	7;270	3	y	0.90	66.5	7	5;128	7	y	0.93	104.0	8	5;203	8	y	0.92	118.5	11	0;237	11	n	0.94	111.5	7	0;223	7	n	0.91	124.0	12	9;239	12	y	ENSMUSG00000052712.18	BC004004	chr17	protein_coding	cDNA sequence BC004004
known_NIR_8004	chr17	29501865	29512981	+	29487976	29512981	A5SS	ENSMUST00000235050.2	known	1.00	163	0	163	0	n	1.00	197	0	197	0	n	0.95	200	10	200	10	y	1.00	166	0	166	0	n	0.98	257	5	257	5	y	0.99	127	1	127	1	n	1.00	270	0	270	0	n	0.98	128	2	128	2	y	1.00	203	1	203	1	n	0.98	237	5	237	5	y	0.99	223	2	223	2	y	0.98	239	4	239	4	y	ENSMUSG00000052712.18	BC004004	chr17	protein_coding	cDNA sequence BC004004
known_NIR_8005	chr17	29515663	29520330	+	29515663	29517616	A3SS&ES	ENSMUST00000234377.2	known	0.00	0	284	0	284	n	0.00	0	342	0	342	n	0.01	2	289	2	289	y	0.00	0	243	0	243	n	0.00	1	420	1	420	n	0.00	0	163	0	163	n	0.00	0	429	0	429	n	0.00	0	150	0	150	n	0.00	0	309	0	309	n	0.00	0	350	0	350	n	0.00	0	360	0	360	n	0.00	0	381	0	381	n	ENSMUSG00000052712.18	BC004004	chr17	protein_coding	cDNA sequence BC004004
known_NIR_8006	chr17	29515663	29520330	+	29515663;29517739	29517616;29520330	ES	ENSMUST00000064709.13	known	0.00	0	278.0	0	284;272	n	0.00	0	333.0	0	342;324	n	0.01	2	286.5	2	289;284	y	0.00	0	227.0	0	243;211	n	0.00	1	435.5	1	420;451	n	0.00	0	162.5	0	163;162	n	0.00	0	414.5	0	429;400	n	0.00	0	155.0	0	150;160	n	0.00	0	295.0	0	309;281	n	0.00	0	359.0	0	350;368	n	0.00	0	358.0	0	360;356	n	0.00	0	350.5	0	381;320	n	ENSMUSG00000052712.18	BC004004	chr17	protein_coding	cDNA sequence BC004004
known_NIR_8007	chr17	29515663	29520330	+	29517739	29520330	5pMXE	ENSMUST00000150874.2	known	0.00	0	272	0	272	n	0.00	0	324	0	324	n	0.01	2	284	2	284	y	0.00	0	211	0	211	n	0.00	1	451	1	451	n	0.00	0	162	0	162	n	0.00	0	400	0	400	n	0.00	0	160	0	160	n	0.00	0	281	0	281	n	0.00	0	368	0	368	n	0.00	0	356	0	356	n	0.00	0	320	0	320	n	ENSMUSG00000052712.18	BC004004	chr17	protein_coding	cDNA sequence BC004004
known_NIR_8008	chr17	29551212	29551635	-	29551231	29551635	A3SS	ENSMUST00000234970.2	known	0.54	7	6	7	6	y	0.35	7	13	7	13	y	0.75	6	2	6	2	n	0.40	4	6	4	6	y	0.47	9	10	9	10	y	1.00	2	0	2	0	n	0.33	11	22	11	22	y	0.56	5	4	5	4	n	0.47	9	10	9	10	y	0.43	13	17	13	17	y	0.61	14	9	14	9	y	0.48	14	15	14	15	y	ENSMUSG00000024012.19	Mtch1	chr17	protein_coding	mitochondrial carrier 1
known_NIR_8009	chr17	29551253	29551635	-	29551212	29551635	A3SS	ENSMUST00000235021.2	known	0.22	2	7	2	7	n	0.50	7	7	7	7	y	0.00	0	6	0	6	n	0.43	3	4	3	4	n	0.25	3	9	3	9	y	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.29	2	5	2	5	n	0.44	7	9	7	9	y	0.28	5	13	5	13	y	0.36	8	14	8	14	y	0.12	2	14	2	14	y	ENSMUSG00000024012.19	Mtch1	chr17	protein_coding	mitochondrial carrier 1
known_NIR_8010	chr17	29551253	29551635	-	29551231	29551635	A3SS	ENSMUST00000234970.2	known	0.25	2	6	2	6	n	0.35	7	13	7	13	y	0.00	0	2	0	2	n	0.33	3	6	3	6	n	0.23	3	10	3	10	y	-	-	-	-	-	-	0.00	0	22	0	22	n	0.33	2	4	2	4	n	0.41	7	10	7	10	y	0.23	5	17	5	17	y	0.47	8	9	8	9	y	0.12	2	15	2	15	y	ENSMUSG00000024012.19	Mtch1	chr17	protein_coding	mitochondrial carrier 1
known_NIR_8011	chr17	29552979	29555192	-	29552979	29555141	A5SS	ENSMUST00000095427.12	known	0.76	200	63	200	63	y	0.70	191	83	191	83	y	0.75	126	42	126	42	y	0.72	193	75	193	75	y	0.85	214	37	214	37	y	0.85	98	17	98	17	y	0.78	252	71	252	71	y	0.74	99	35	99	35	y	0.79	176	46	176	46	y	0.75	266	88	266	88	y	0.78	201	58	201	58	y	0.75	199	67	199	67	y	ENSMUSG00000024012.19	Mtch1	chr17	protein_coding	mitochondrial carrier 1
known_NIR_8012	chr17	29559871;29560175	29560039;29561797	-	29559871	29561797	cassetteExon	ENSMUST00000095427.12	known	0.01	1.0	126	0;2	126	n	0.01	1.5	122	1;2	122	n	0.00	0.5	103	0;1	103	n	0.01	1.5	174	3;0	174	n	0.01	2.0	163	2;2	163	y	0.00	0.0	60	0;0	60	n	0.00	0.5	194	0;1	194	n	0.01	1.0	83	2;0	83	n	0.01	1.5	118	3;0	118	n	0.00	0.5	227	0;1	227	n	0.01	1.5	155	2;1	155	n	0.00	0.5	170	0;1	170	n	ENSMUSG00000024012.19	Mtch1	chr17	protein_coding	mitochondrial carrier 1
known_NIR_8013	chr17	29586101	29586250	+	29586101	29586245	A3SS	ENSMUST00000024810.8	known	0.00	0	9	0	9	n	0.14	2	12	2	12	y	0.00	0	6	0	6	n	0.33	3	6	3	6	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.33	1	2	1	2	n	0.17	1	5	1	5	n	0.00	0	6	0	6	n	ENSMUSG00000024013.16	Fgd2	chr17	protein_coding	FYVE, RhoGEF and PH domain containing 2
known_NIR_8014	chr17	29595699	29595802	+	29593952	29595802	A5SS	ENSMUST00000024810.8	known	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.14	2	12	2	12	y	0.00	0	1	0	1	n	0.15	2	11	2	11	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	ENSMUSG00000024013.16	Fgd2	chr17	protein_coding	FYVE, RhoGEF and PH domain containing 2
known_NIR_8015	chr17	29711343	29712696	+	29711005	29712696	A5SS	ENSMUST00000024811.9	known	0.02	1	43	1	43	n	0.00	0	15	0	15	n	0.00	0	64	0	64	n	0.00	0	44	0	44	n	0.00	0	101	0	101	n	0.00	0	53	0	53	n	0.01	1	102	1	102	n	0.00	0	32	0	32	n	0.07	3	41	3	41	y	0.14	5	31	5	31	y	0.00	0	62	0	62	n	0.04	2	45	2	45	y	ENSMUSG00000024014.9	Pim1	chr17	protein_coding	proviral integration site 1
known_NIR_8016	chr17	29711400	29712696	+	29711005	29712696	A5SS	ENSMUST00000024811.9	known	0.00	0	43	0	43	n	0.00	0	15	0	15	n	0.00	0	64	0	64	n	0.06	3	44	3	44	y	0.00	0	101	0	101	n	0.00	0	53	0	53	n	0.00	0	102	0	102	n	0.14	5	32	5	32	y	0.00	0	41	0	41	n	0.06	2	31	2	31	y	0.00	0	62	0	62	n	0.06	3	45	3	45	y	ENSMUSG00000024014.9	Pim1	chr17	protein_coding	proviral integration site 1
known_NIR_8017	chr17	29834052	29838268	+	29834052	29840483	A3SS	ENSMUST00000024817.15	known	0.05	1	20	1	20	n	0.00	0	22	0	22	n	0.00	0	25	0	25	n	0.09	2	20	2	20	y	0.00	0	28	0	28	n	0.05	1	19	1	19	n	0.00	0	22	0	22	n	0.00	0	21	0	21	n	0.11	2	16	2	16	y	0.00	0	36	0	36	n	0.09	2	21	2	21	y	0.03	1	38	1	38	n	ENSMUSG00000090083.12	Rnf8	chr17	protein_coding	ring finger protein 8
known_NIR_8018	chr17	29879745	29882146	+	29880132	29882146	5pMXE	ENSMUST00000130423.4	known	1.00	32	0	32	0	n	1.00	23	0	23	0	n	1.00	44	0	44	0	n	1.00	67	0	67	0	n	0.96	48	2	48	2	y	1.00	22	0	22	0	n	1.00	52	0	52	0	n	1.00	32	0	32	0	n	1.00	27	0	27	0	n	1.00	51	0	51	0	n	1.00	37	0	37	0	n	1.00	37	0	37	0	n	ENSMUSG00000024019.19	Cmtr1	chr17	protein_coding	cap methyltransferase 1
known_NIR_8019	chr17	29901168	29904825	+	29901168	29904883	A3SS	ENSMUST00000130871.2	known	0.96	49	2	49	2	y	0.90	18	2	18	2	y	0.95	52	3	52	3	y	1.00	58	0	58	0	n	0.97	67	2	67	2	y	0.90	28	3	28	3	y	0.96	48	2	48	2	y	0.96	26	1	26	1	n	0.92	33	3	33	3	y	0.91	50	5	50	5	y	0.86	42	7	42	7	y	0.93	66	5	66	5	y	ENSMUSG00000098374.2	Gm28043	chr17	protein_coding	predicted gene, 28043
known_NIR_8020	chr17	29919226	29923229	-	29919226	29923344	A5SS	ENSMUST00000129091.9	known	0.20	1	4	1	4	n	0.17	1	5	1	5	n	0.09	2	21	2	21	y	0.00	0	3	0	3	n	0.11	2	17	2	17	y	0.00	0	18	0	18	n	0.20	1	4	1	4	n	0.00	0	21	0	21	n	0.00	0	5	0	5	n	0.25	2	6	2	6	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000024018.19	Ccdc167	chr17	protein_coding	coiled-coil domain containing 167
known_NIR_8021	chr17	29923443;29924294	29924245;29924463	-	29923443	29924463	cassetteExon	ENSMUST00000137079.9	known	0.92	35.5	3	71;0	3	n	0.96	54.0	2	107;1	2	n	0.95	77.0	4	150;4	4	y	1.00	31.5	0	61;2	0	n	0.93	71.0	5	141;1	5	n	1.00	54.5	0	107;2	0	n	0.96	64.0	3	127;1	3	n	0.98	51.0	1	102;0	1	n	1.00	35.5	0	71;0	0	n	0.90	46.5	5	92;1	5	n	1.00	45.5	0	91;0	0	n	0.97	35.5	1	71;0	1	n	ENSMUSG00000024018.19	Ccdc167	chr17	protein_coding	coiled-coil domain containing 167
known_NIR_8022	chr17	29923443;29924297	29924245;29924463	-	29923443	29924463	cassetteExon	ENSMUST00000137079.9	known	0.96	78.5	3	71;86	3	y	0.98	119.0	2	107;131	2	y	0.98	172.5	4	150;195	4	y	1.00	68.5	0	61;76	0	n	0.97	164.0	5	141;187	5	y	1.00	124.5	0	107;142	0	n	0.98	158.0	3	127;189	3	y	0.99	117.0	1	102;132	1	n	1.00	82.0	0	71;93	0	n	0.96	107.5	5	92;123	5	y	1.00	111.0	0	91;131	0	n	0.99	92.0	1	71;113	1	n	ENSMUSG00000024018.19	Ccdc167	chr17	protein_coding	coiled-coil domain containing 167
known_NIR_8023	chr17	29924294	29924463	-	29924297	29924463	A3SS	ENSMUST00000129091.9	known	0.00	0	86	0	86	n	0.01	1	131	1	131	n	0.02	4	195	4	195	y	0.03	2	76	2	76	y	0.01	1	187	1	187	n	0.01	2	142	2	142	y	0.01	1	189	1	189	n	0.00	0	132	0	132	n	0.00	0	93	0	93	n	0.01	1	123	1	123	n	0.00	0	131	0	131	n	0.00	0	113	0	113	n	ENSMUSG00000024018.19	Ccdc167	chr17	protein_coding	coiled-coil domain containing 167
known_NIR_8024	chr17	29932130	29935908	-	29924557	29935908	A3SS	ENSMUST00000137079.9	known	0.00	0	75	0	75	n	0.00	0	94	0	94	n	0.00	0	133	0	133	n	0.00	0	63	0	63	n	0.01	1	125	1	125	n	0.00	0	107	0	107	n	0.00	0	135	0	135	n	0.02	2	113	2	113	y	0.00	0	76	0	76	n	0.00	0	112	0	112	n	0.00	0	100	0	100	n	0.00	0	63	0	63	n	ENSMUSG00000024018.19	Ccdc167	chr17	protein_coding	coiled-coil domain containing 167
known_NIR_8025	chr17	30224282	30354297	+	30224282;30279824	30279784;30354297	ES	ENSMUST00000226208.3	known	0.26	30	87.5	30	79;96	y	0.16	12	63.0	12	62;64	y	0.24	37	114.5	37	107;122	y	0.06	5	80.0	5	72;88	y	0.16	26	134.5	26	123;146	y	0.20	19	74.0	19	66;82	y	0.18	24	109.5	24	96;123	y	0.28	22	55.5	22	49;62	y	0.17	14	67.0	14	62;72	y	0.13	15	102.0	15	91;113	y	0.10	7	66.5	7	56;77	y	0.10	13	111.0	13	97;125	y	ENSMUSG00000044477.13	Zfand3	chr17	protein_coding	zinc finger, AN1-type domain 3
known_NIR_8026	chr17	30354479	30411537	+	30354479;30372342	30372277;30411537	ES	ENSMUST00000226208.3	known	0.06	11	177.0	11	185;169	y	0.02	4	161.0	4	186;136	y	0.12	42	296.5	42	321;272	y	0.03	6	175.5	6	201;150	y	0.03	8	246.5	8	273;220	y	0.07	11	146.0	11	179;113	y	0.07	18	242.0	18	278;206	y	0.07	10	135.0	10	151;119	y	0.02	4	164.0	4	190;138	y	0.03	8	263.0	8	311;215	y	0.02	3	177.5	3	190;165	y	0.05	14	258.5	14	290;227	y	ENSMUSG00000044477.13	Zfand3	chr17	protein_coding	zinc finger, AN1-type domain 3
known_NIR_8027	chr17	30355215	30372277	+	30354479	30372277	A5SS	ENSMUST00000226208.3	known	0.02	3	185	3	185	y	0.01	2	186	2	186	y	0.01	3	321	3	321	y	0.02	4	201	4	201	y	0.00	1	273	1	273	n	0.00	0	179	0	179	n	0.00	0	278	0	278	n	0.00	0	151	0	151	n	0.02	4	190	4	190	y	0.03	8	311	8	311	y	0.03	6	190	6	190	y	0.00	0	290	0	290	n	ENSMUSG00000044477.13	Zfand3	chr17	protein_coding	zinc finger, AN1-type domain 3
known_NIR_8028	chr17	30815437	30815685	-	30815437	30816779	A5SS	ENSMUST00000236335.2	known	0.00	2	1403	2	1403	y	0.00	0	1418	0	1418	n	0.00	0	866	0	866	n	0.00	0	1419	0	1419	n	0.00	2	1632	2	1632	y	0.00	0	548	0	548	n	0.00	0	1754	0	1754	n	0.00	0	784	0	784	n	0.00	0	1233	0	1233	n	0.00	1	2308	1	2308	n	0.00	0	1681	0	1681	n	0.00	0	1734	0	1734	n	ENSMUSG00000024026.14	Glo1	chr17	protein_coding	glyoxalase 1
known_NIR_8029	chr17	30815437	30816779	-	30815437;30816616	30815685;30816779	ES	ENSMUST00000236995.2	known	1.00	1403	4.0	1403	2;6	y	1.00	1418	1.0	1418	0;2	n	1.00	866	1.0	866	0;2	n	1.00	1419	0.5	1419	0;1	n	1.00	1632	4.0	1632	2;6	y	1.00	548	0.0	548	0;0	n	1.00	1754	1.5	1754	0;3	n	1.00	784	0.0	784	0;0	n	1.00	1233	1.5	1233	0;3	n	1.00	2308	1.0	2308	1;1	n	1.00	1681	0.5	1681	0;1	n	1.00	1734	0.0	1734	0;0	n	ENSMUSG00000024026.14	Glo1	chr17	protein_coding	glyoxalase 1
known_NIR_8030	chr17	30816616	30816779	-	30815437	30816779	A3SS	ENSMUST00000236335.2	known	0.00	6	1403	6	1403	y	0.00	2	1418	2	1418	y	0.00	2	866	2	866	y	0.00	1	1419	1	1419	n	0.00	6	1632	6	1632	y	0.00	0	548	0	548	n	0.00	3	1754	3	1754	y	0.00	0	784	0	784	n	0.00	3	1233	3	1233	y	0.00	1	2308	1	2308	n	0.00	1	1681	1	1681	n	0.00	0	1734	0	1734	n	ENSMUSG00000024026.14	Glo1	chr17	protein_coding	glyoxalase 1
known_NIR_8031	chr17	30816866	30819013	-	30816846	30819013	A3SS	ENSMUST00000236335.2	known	0.00	1	1498	1	1498	n	0.00	0	1461	0	1461	n	0.00	3	947	3	947	y	0.00	3	1553	3	1553	y	0.00	2	1652	2	1652	y	0.01	4	573	4	573	y	0.00	4	1946	4	1946	y	0.00	0	808	0	808	n	0.00	2	1315	2	1315	y	0.00	4	2286	4	2286	y	0.00	4	1803	4	1803	y	0.00	5	1737	5	1737	y	ENSMUSG00000024026.14	Glo1	chr17	protein_coding	glyoxalase 1
known_NIR_8032	chr17	30819153;30822491	30822361;30822994	-	30819153	30822994	cassetteExon	ENSMUST00000236335.2	known	0.00	3.0	1142	6;0	1142	n	0.00	1.0	1035	2;0	1035	n	0.00	3.0	698	3;3	698	y	0.00	3.0	1155	3;3	1155	y	0.00	2.0	1362	4;0	1362	n	0.00	2.0	410	1;3	410	n	0.00	4.0	1437	4;4	1437	y	0.00	2.0	681	1;3	681	n	0.00	2.0	1020	4;0	1020	n	0.00	4.0	1755	3;5	1755	y	0.00	4.5	1329	2;7	1329	y	0.00	2.5	1365	3;2	1365	y	ENSMUSG00000024026.14	Glo1	chr17	protein_coding	glyoxalase 1
known_NIR_8033	chr17	31371946;31372641	31372605;31372845	+	31371946	31372845	cassetteExon	ENSMUST00000148215.9	known	0.83	25.0	5	30;20	5	y	0.97	30.0	1	30;30	1	n	0.54	3.5	3	5;2	3	y	0.94	29.0	2	32;26	2	y	0.79	26.5	7	26;27	7	y	0.67	4.0	2	3;5	2	y	0.91	21.0	2	20;22	2	y	0.82	9.0	2	9;9	2	y	0.88	23.0	3	23;23	3	y	0.87	39.0	6	44;34	6	y	0.95	17.5	1	18;17	1	n	0.86	31.0	5	33;29	5	y	ENSMUSG00000086010.9	Gm15318	chr17	lncRNA	predicted gene 15318
known_NIR_8034	chr17	31373026	31377985	+	31373026;31374653	31374522;31377985	ES	ENSMUST00000148215.9	known	0.35	10	18.5	10	17;20	y	0.16	3	15.5	3	19;12	y	0.00	0	2.5	0	0;5	n	0.43	10	13.5	10	13;14	y	0.21	4	15.5	4	18;13	y	0.00	0	2.5	0	3;2	n	0.32	6	12.5	6	11;14	y	0.17	2	10.0	2	10;10	y	0.17	4	20.0	4	20;20	y	0.40	15	22.5	15	16;29	y	0.27	4	11.0	4	11;11	y	0.41	9	13.0	9	15;11	y	ENSMUSG00000086010.9	Gm15318	chr17	lncRNA	predicted gene 15318
known_NIR_8035	chr17	31378052	31380395	+	31378061	31380395	A5SS	ENSMUST00000148215.9	known	0.65	28	15	28	15	y	0.47	20	23	20	23	y	0.67	4	2	4	2	n	0.38	9	15	9	15	y	0.19	5	21	5	21	y	0.40	2	3	2	3	n	0.41	12	17	12	17	y	0.55	6	5	6	5	y	0.62	18	11	18	11	y	0.42	19	26	19	26	y	0.40	10	15	10	15	y	0.56	14	11	14	11	y	ENSMUSG00000086010.9	Gm15318	chr17	lncRNA	predicted gene 15318
known_NIR_8036	chr17	31378061	31379624	+	31378061	31380395	A3SS	ENSMUST00000148215.9	known	0.06	1	15	1	15	n	0.00	0	23	0	23	n	0.00	0	2	0	2	n	0.00	0	15	0	15	n	0.12	3	21	3	21	y	0.00	0	3	0	3	n	0.19	4	17	4	17	y	0.00	0	5	0	5	n	0.15	2	11	2	11	y	0.10	3	26	3	26	y	0.21	4	15	4	15	y	0.27	4	11	4	11	y	ENSMUSG00000086010.9	Gm15318	chr17	lncRNA	predicted gene 15318
known_NIR_8037	chr17	31515397	31519264	+	31515889	31519264	A5SS	ENSMUST00000165149.3	known	0.00	0	13	0	13	n	0.04	1	26	1	26	n	0.00	0	40	0	40	n	0.00	0	27	0	27	n	0.00	0	72	0	72	n	0.00	0	23	0	23	n	0.00	0	37	0	37	n	0.00	0	28	0	28	n	0.00	0	12	0	12	n	0.00	0	27	0	27	n	0.00	0	12	0	12	n	0.07	2	25	2	25	y	ENSMUSG00000024036.17	Slc37a1	chr17	protein_coding	solute carrier family 37 (glycerol-3-phosphate transporter), member 1
known_NIR_8038	chr17	31515889	31519264	+	31514728	31519264	A5SS	ENSMUST00000171233.9	known	1.00	13	0	13	0	n	0.96	26	1	26	1	n	1.00	40	0	40	0	n	1.00	27	0	27	0	n	0.96	72	3	72	3	y	0.96	23	1	23	1	n	1.00	37	0	37	0	n	1.00	28	0	28	0	n	1.00	12	0	12	0	n	1.00	27	0	27	0	n	1.00	12	0	12	0	n	1.00	25	0	25	0	n	ENSMUSG00000024036.17	Slc37a1	chr17	protein_coding	solute carrier family 37 (glycerol-3-phosphate transporter), member 1
known_NIR_8039	chr17	31515889	31519264	+	31515229	31519264	A5SS	ENSMUST00000235972.2	known	1.00	13	0	13	0	n	1.00	26	0	26	0	n	1.00	40	0	40	0	n	0.96	27	1	27	1	n	0.96	72	3	72	3	y	1.00	23	0	23	0	n	0.97	37	1	37	1	n	1.00	28	0	28	0	n	1.00	12	0	12	0	n	0.90	27	3	27	3	y	1.00	12	0	12	0	n	0.93	25	2	25	2	y	ENSMUSG00000024036.17	Slc37a1	chr17	protein_coding	solute carrier family 37 (glycerol-3-phosphate transporter), member 1
known_NIR_8040	chr17	31519481	31534468	+	31519481;31526335	31526254;31534468	ES	ENSMUST00000237389.2	known	0.00	0	15.5	0	16;15	n	0.06	1	16.5	1	23;10	n	0.00	0	40.0	0	45;35	n	0.00	0	19.5	0	19;20	n	0.00	0	51.0	0	68;34	n	0.00	0	26.5	0	26;27	n	0.12	4	28.5	4	26;31	y	0.00	0	29.5	0	33;26	n	0.00	0	17.0	0	16;18	n	0.00	0	20.0	0	28;12	n	0.00	0	15.0	0	17;13	n	0.00	0	23.0	0	29;17	n	ENSMUSG00000024036.17	Slc37a1	chr17	protein_coding	solute carrier family 37 (glycerol-3-phosphate transporter), member 1
known_NIR_8041	chr17	31524939	31526254	+	31519481	31526254	A5SS	ENSMUST00000237389.2	known	0.00	0	16	0	16	n	0.00	0	23	0	23	n	0.00	0	45	0	45	n	0.00	0	19	0	19	n	0.03	2	68	2	68	y	0.04	1	26	1	26	n	0.00	0	26	0	26	n	0.00	0	33	0	33	n	0.00	0	16	0	16	n	0.00	0	28	0	28	n	0.00	0	17	0	17	n	0.00	0	29	0	29	n	ENSMUSG00000024036.17	Slc37a1	chr17	protein_coding	solute carrier family 37 (glycerol-3-phosphate transporter), member 1
known_NIR_8042	chr17	31547203	31554708	+	31547203;31552671	31552546;31554708	ES	ENSMUST00000171233.9	known	0.00	0	20.0	0	21;19	n	0.00	0	31.5	0	34;29	n	0.00	0	51.5	0	57;46	n	0.00	0	25.0	0	32;18	n	0.03	2	63.5	2	57;70	y	0.00	0	32.0	0	31;33	n	0.02	1	46.0	1	49;43	n	0.03	1	36.5	1	39;34	n	0.04	1	27.5	1	32;23	n	0.00	0	32.5	0	39;26	n	0.00	0	11.0	0	15;7	n	0.00	0	38.5	0	50;27	n	ENSMUSG00000024036.17	Slc37a1	chr17	protein_coding	solute carrier family 37 (glycerol-3-phosphate transporter), member 1
known_NIR_8043	chr17	31552671	31552855	+	31552671	31554708	A3SS	ENSMUST00000171233.9	known	0.00	0	19	0	19	n	0.00	0	29	0	29	n	0.02	1	46	1	46	n	0.05	1	18	1	18	n	0.00	0	70	0	70	n	0.08	3	33	3	33	y	0.00	0	43	0	43	n	0.03	1	34	1	34	n	0.08	2	23	2	23	y	0.00	0	26	0	26	n	0.00	0	7	0	7	n	0.07	2	27	2	27	y	ENSMUSG00000024036.17	Slc37a1	chr17	protein_coding	solute carrier family 37 (glycerol-3-phosphate transporter), member 1
known_NIR_8044	chr17	31639231	31662140	+	31639262	31662140	A5SS	ENSMUST00000047168.13	known	0.00	0	22	0	22	n	0.00	0	18	0	18	n	0.00	0	19	0	19	n	0.12	6	42	6	42	y	0.06	3	50	3	50	y	0.00	0	12	0	12	n	0.00	0	21	0	21	n	0.00	0	17	0	17	n	0.04	2	46	2	46	y	0.00	0	46	0	46	n	0.04	2	43	2	43	y	0.00	0	40	0	40	n	ENSMUSG00000041119.13	Pde9a	chr17	protein_coding	phosphodiesterase 9A
known_NIR_8045	chr17	3165693;3172389	3172328;3195350	+	3165693	3195350	cassetteExon	ENSMUST00000232079.2	known	0.00	0.0	7	0;0	7	n	0.09	0.5	5	0;1	5	n	0.26	6.0	17	5;7	17	y	0.14	2.0	12	2;2	12	y	0.27	5.5	15	7;4	15	y	0.41	7.0	10	5;9	10	y	0.13	1.5	10	2;1	10	n	0.05	0.5	10	0;1	10	n	0.00	0.0	7	0;0	7	n	0.16	3.5	18	4;3	18	y	0.28	3.5	9	5;2	9	y	0.11	0.5	4	0;1	4	n	ENSMUSG00000046201.10	Scaf8	chr17	protein_coding	SR-related CTD-associated factor 8
known_NIR_8046	chr17	31662882	31672376	+	31662882;31667425	31667341;31672376	ES	ENSMUST00000047168.13	known	0.00	0	33.0	0	32;34	n	0.00	0	25.5	0	23;28	n	0.00	0	14.5	0	12;17	n	0.00	0	33.5	0	33;34	n	0.00	0	48.5	0	60;37	n	0.00	0	18.0	0	16;20	n	0.00	0	39.0	0	38;40	n	0.09	2	20.0	2	22;18	y	0.00	0	45.0	0	38;52	n	0.00	0	44.5	0	47;42	n	0.00	0	37.5	0	31;44	n	0.00	0	48.5	0	46;51	n	ENSMUSG00000041119.13	Pde9a	chr17	protein_coding	phosphodiesterase 9A
known_NIR_8047	chr17	31679223	31680545	+	31679235	31680545	A5SS	ENSMUST00000047168.13	known	0.00	0	41	0	41	n	0.00	0	30	0	30	n	0.00	0	10	0	10	n	0.00	0	17	0	17	n	0.00	0	59	0	59	n	0.00	0	18	0	18	n	0.05	2	38	2	38	y	0.04	1	23	1	23	n	0.00	0	50	0	50	n	0.00	0	50	0	50	n	0.00	0	57	0	57	n	0.00	0	36	0	36	n	ENSMUSG00000041119.13	Pde9a	chr17	protein_coding	phosphodiesterase 9A
known_NIR_8048	chr17	31690828	31692138	+	31690828	31692132	A3SS	ENSMUST00000047168.13	known	0.00	0	48	0	48	n	0.00	0	60	0	60	n	0.00	0	29	0	29	n	0.04	2	44	2	44	y	0.00	0	54	0	54	n	0.00	0	26	0	26	n	0.00	0	68	0	68	n	0.00	0	24	0	24	n	0.03	2	67	2	67	y	0.00	0	68	0	68	n	0.03	2	76	2	76	y	0.00	0	48	0	48	n	ENSMUSG00000041119.13	Pde9a	chr17	protein_coding	phosphodiesterase 9A
known_NIR_8049	chr17	31692253	31694902	+	31692253	31694899	A3SS	ENSMUST00000047168.13	known	0.21	15	55	15	55	y	0.18	19	87	19	87	y	0.18	7	32	7	32	y	0.27	14	38	14	38	y	0.24	24	78	24	78	y	0.23	6	20	6	20	y	0.21	19	71	19	71	y	0.21	13	50	13	50	y	0.20	20	82	20	82	y	0.23	16	54	16	54	y	0.15	16	90	16	90	y	0.20	19	75	19	75	y	ENSMUSG00000041119.13	Pde9a	chr17	protein_coding	phosphodiesterase 9A
known_NIR_8050	chr17	31722640	31728795	-	31722640	31728743	A5SS	ENSMUST00000171171.9	known	0.47	7	8	7	8	y	0.33	5	10	5	10	y	0.07	2	27	2	27	y	0.25	5	15	5	15	y	0.21	9	33	9	33	y	0.57	4	3	4	3	n	0.43	12	16	12	16	y	0.17	2	10	2	10	y	0.24	6	19	6	19	y	0.35	11	20	11	20	y	0.13	2	13	2	13	y	0.48	16	17	16	17	y	ENSMUSG00000024037.14	Wdr4	chr17	protein_coding	WD repeat domain 4
known_NIR_8051	chr17	31722701	31728743	-	31722640	31728743	A3SS	ENSMUST00000171171.9	known	0.11	1	8	1	8	n	0.09	1	10	1	10	n	0.07	2	27	2	27	y	0.21	4	15	4	15	y	0.03	1	33	1	33	n	0.50	3	3	3	3	n	0.16	3	16	3	16	y	0.17	2	10	2	10	y	0.05	1	19	1	19	n	0.09	2	20	2	20	y	0.46	11	13	11	13	y	0.06	1	17	1	17	n	ENSMUSG00000024037.14	Wdr4	chr17	protein_coding	WD repeat domain 4
known_NIR_8052	chr17	31722701	31728795	-	31722640	31728795	A3SS	ENSMUST00000172284.9	known	0.50	7	7	7	7	y	0.50	5	5	5	5	y	0.00	0	2	0	2	n	0.44	4	5	4	5	n	0.47	8	9	8	9	y	0.00	0	4	0	4	n	0.33	6	12	6	12	y	0.60	3	2	3	2	n	0.00	0	6	0	6	n	0.15	2	11	2	11	y	0.67	4	2	4	2	n	0.24	5	16	5	16	y	ENSMUSG00000024037.14	Wdr4	chr17	protein_coding	WD repeat domain 4
known_NIR_8053	chr17	31722701	31728795	-	31722701	31728743	A5SS	ENSMUST00000236913.2	known	0.88	7	1	7	1	n	0.83	5	1	5	1	n	0.00	0	2	0	2	n	0.50	4	4	4	4	n	0.89	8	1	8	1	n	0.00	0	3	0	3	n	0.67	6	3	6	3	n	0.60	3	2	3	2	n	0.00	0	1	0	1	n	0.50	2	2	2	2	n	0.27	4	11	4	11	y	0.83	5	1	5	1	n	ENSMUSG00000024037.14	Wdr4	chr17	protein_coding	WD repeat domain 4
known_NIR_8054	chr17	31729620	31737792	-	31729620	31731141	5pMXE	ENSMUST00000171171.9	known	0.00	0	26	0	26	n	0.00	0	28	0	28	n	0.00	0	38	0	38	n	0.06	1	15	1	15	n	0.00	0	52	0	52	n	0.00	0	10	0	10	n	0.03	1	38	1	38	n	0.00	0	14	0	14	n	0.00	0	24	0	24	n	0.02	1	40	1	40	n	0.11	2	17	2	17	y	0.00	0	30	0	30	n	ENSMUSG00000024037.14	Wdr4	chr17	protein_coding	WD repeat domain 4
known_NIR_8055	chr17	31740666	31745776	+	31740666	31746284	A3SS	ENSMUST00000046288.16	known	0.28	7	18	7	18	y	0.17	4	19	4	19	y	0.13	4	26	4	26	y	0.23	7	23	7	23	y	0.14	9	56	9	56	y	0.17	4	20	4	20	y	0.28	14	36	14	36	y	0.27	8	22	8	22	y	0.32	15	32	15	32	y	0.13	7	45	7	45	y	0.17	6	29	6	29	y	0.06	2	29	2	29	y	ENSMUSG00000024038.18	Ndufv3	chr17	protein_coding	NADH:ubiquinone oxidoreductase core subunit V3
known_NIR_8056	chr17	31740666	31745776	+	31740666	31750084	A3SS	ENSMUST00000064798.16	known	0.01	7	816	7	816	y	0.00	4	867	4	867	y	0.01	4	615	4	615	y	0.01	7	694	7	694	y	0.01	9	930	9	930	y	0.01	4	475	4	475	y	0.01	14	1094	14	1094	y	0.02	8	448	8	448	y	0.02	15	830	15	830	y	0.01	7	1226	7	1226	y	0.01	6	1081	6	1081	y	0.00	2	951	2	951	y	ENSMUSG00000024038.18	Ndufv3	chr17	protein_coding	NADH:ubiquinone oxidoreductase core subunit V3
known_NIR_8057	chr17	31740666	31746284	+	31740666	31750084	A3SS	ENSMUST00000064798.16	known	0.02	18	816	18	816	y	0.02	19	867	19	867	y	0.04	26	615	26	615	y	0.03	23	694	23	694	y	0.06	56	930	56	930	y	0.04	20	475	20	475	y	0.03	36	1094	36	1094	y	0.05	22	448	22	448	y	0.04	32	830	32	830	y	0.04	45	1226	45	1226	y	0.03	29	1081	29	1081	y	0.03	29	951	29	951	y	ENSMUSG00000024038.18	Ndufv3	chr17	protein_coding	NADH:ubiquinone oxidoreductase core subunit V3
known_NIR_8058	chr17	31740666	31750084	+	31740666;31747375	31746284;31750084	ES	ENSMUST00000046288.16	known	0.96	816	36.5	816	18;55	y	0.97	867	31.0	867	19;43	y	0.95	615	31.0	615	26;36	y	0.97	694	25.0	694	23;27	y	0.95	930	50.5	930	56;45	y	0.95	475	25.5	475	20;31	y	0.96	1094	48.5	1094	36;61	y	0.95	448	22.0	448	22;22	y	0.96	830	36.0	830	32;40	y	0.96	1226	50.5	1226	45;56	y	0.96	1081	42.5	1081	29;56	y	0.96	951	38.5	951	29;48	y	ENSMUSG00000024038.18	Ndufv3	chr17	protein_coding	NADH:ubiquinone oxidoreductase core subunit V3
known_NIR_8059	chr17	31747375	31750084	+	31740666	31750084	A5SS	ENSMUST00000064798.16	known	0.06	55	816	55	816	y	0.05	43	867	43	867	y	0.06	36	615	36	615	y	0.04	27	694	27	694	y	0.05	45	930	45	930	y	0.06	31	475	31	475	y	0.05	61	1094	61	1094	y	0.05	22	448	22	448	y	0.05	40	830	40	830	y	0.04	56	1226	56	1226	y	0.05	56	1081	56	1081	y	0.05	48	951	48	951	y	ENSMUSG00000024038.18	Ndufv3	chr17	protein_coding	NADH:ubiquinone oxidoreductase core subunit V3
known_NIR_8060	chr17	31783862;31801016	31800778;31802670	+	31783862	31802670	cassetteExon	ENSMUST00000097352.11	known	0.20	1.0	4	2;0	4	n	0.00	0.0	6	0;0	6	n	0.29	2.5	6	2;3	6	y	0.30	3.5	8	5;2	8	y	0.19	3.5	15	7;0	15	n	0.29	2.5	6	2;3	6	y	0.23	3.0	10	4;2	10	y	0.50	3.0	3	2;4	3	n	0.07	0.5	7	1;0	7	n	0.29	2.5	6	5;0	6	n	0.25	2.0	6	4;0	6	n	0.22	2.0	7	4;0	7	n	ENSMUSG00000006705.14	Pknox1	chr17	protein_coding	Pbx/knotted 1 homeobox
known_NIR_8061	chr17	31783862;31801024	31800778;31802670	+	31783862	31802670	cassetteExon	ENSMUST00000097352.11	known	0.33	2.0	4	2;2	4	n	0.25	2.0	6	0;4	6	n	0.40	4.0	6	2;6	6	y	0.38	5.0	8	5;5	8	y	0.36	8.5	15	7;10	15	y	0.37	3.5	6	2;5	6	y	0.38	6.0	10	4;8	10	y	0.54	3.5	3	2;5	3	y	0.18	1.5	7	1;2	7	n	0.56	7.5	6	5;10	6	y	0.25	2.0	6	4;0	6	n	0.42	5.0	7	4;6	7	y	ENSMUSG00000006705.14	Pknox1	chr17	protein_coding	Pbx/knotted 1 homeobox
known_NIR_8062	chr17	31801024	31802670	+	31801016	31802670	A5SS	ENSMUST00000235869.2	known	1.00	2	0	2	0	n	1.00	4	0	4	0	n	0.67	6	3	6	3	n	0.71	5	2	5	2	n	1.00	10	0	10	0	n	0.62	5	3	5	3	n	0.80	8	2	8	2	y	0.56	5	4	5	4	n	1.00	2	0	2	0	n	1.00	10	0	10	0	n	-	-	-	-	-	-	1.00	6	0	6	0	n	ENSMUSG00000006705.14	Pknox1	chr17	protein_coding	Pbx/knotted 1 homeobox
known_NIR_8063	chr17	31807561	31809600	+	31807561	31809577	A3SS	ENSMUST00000097352.11	known	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.00	0	22	0	22	n	0.00	0	13	0	13	n	0.00	0	28	0	28	n	0.00	0	8	0	8	n	0.00	0	24	0	24	n	0.00	0	15	0	15	n	0.17	2	10	2	10	y	0.00	0	26	0	26	n	0.00	0	11	0	11	n	0.00	0	32	0	32	n	ENSMUSG00000006705.14	Pknox1	chr17	protein_coding	Pbx/knotted 1 homeobox
known_NIR_8064	chr17	31811249	31814202	+	31811249	31814199	A3SS	ENSMUST00000097352.11	known	0.30	3	7	3	7	y	0.23	3	10	3	10	y	0.06	1	16	1	16	n	0.29	6	15	6	15	y	0.34	10	19	10	19	y	0.00	0	10	0	10	n	0.29	2	5	2	5	n	0.05	1	21	1	21	n	0.25	2	6	2	6	n	0.09	2	20	2	20	y	0.21	4	15	4	15	y	0.24	4	13	4	13	y	ENSMUSG00000006705.14	Pknox1	chr17	protein_coding	Pbx/knotted 1 homeobox
known_NIR_8065	chr17	31815867	31818495	+	31815867	31818489	A3SS	ENSMUST00000097352.11	known	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	25	0	25	n	0.05	1	18	1	18	n	0.18	4	18	4	18	y	0.21	3	11	3	11	y	0.00	0	19	0	19	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.11	2	16	2	16	y	0.15	3	17	3	17	y	0.12	2	14	2	14	y	ENSMUSG00000006705.14	Pknox1	chr17	protein_coding	Pbx/knotted 1 homeobox
known_NIR_8066	chr17	31832267	31834448	-	31832267;31833544	31833503;31834448	ES	ENSMUST00000236853.2	known	0.54	698	591.0	698	572;610	y	0.52	660	603.5	660	549;658	y	0.69	700	318.5	700	313;324	y	0.54	612	526.0	612	487;565	y	0.60	872	590.0	872	548;632	y	0.64	387	221.5	387	204;239	y	0.58	828	595.0	828	551;639	y	0.63	429	253.5	429	230;277	y	0.51	558	527.0	558	482;572	y	0.53	845	761.5	845	699;824	y	0.54	656	559.5	656	527;592	y	0.57	1201	923.0	1201	880;966	y	ENSMUSG00000024039.16	Cbs	chr17	protein_coding	cystathionine beta-synthase
known_NIR_8067	chr17	31852125	31855404	-	31852125	31856057	A5SS	ENSMUST00000067801.14	known	0.16	7	36	7	36	y	0.09	3	32	3	32	y	0.35	16	30	16	30	y	0.25	17	52	17	52	y	0.16	12	64	12	64	y	0.25	10	30	10	30	y	0.18	9	41	9	41	y	0.21	8	30	8	30	y	0.36	12	21	12	21	y	0.23	17	56	17	56	y	0.22	11	39	11	39	y	0.16	13	67	13	67	y	ENSMUSG00000024039.16	Cbs	chr17	protein_coding	cystathionine beta-synthase
known_NIR_8068	chr17	31852125	31855404	-	31852128	31855404	A3SS	ENSMUST00000151718.3	known	0.07	7	93	7	93	y	0.05	3	59	3	59	y	0.12	16	117	16	117	y	0.15	17	96	17	96	y	0.08	12	143	12	143	y	0.10	10	87	10	87	y	0.07	9	126	9	126	y	0.10	8	76	8	76	y	0.11	12	94	12	94	y	0.12	17	126	17	126	y	0.12	11	82	11	82	y	0.08	13	159	13	159	y	ENSMUSG00000024039.16	Cbs	chr17	protein_coding	cystathionine beta-synthase
known_NIR_8069	chr17	31852125	31856057	-	31852128	31856057	A3SS	ENSMUST00000236853.2	known	0.11	36	291	36	291	y	0.12	32	234	32	234	y	0.15	30	176	30	176	y	0.13	52	342	52	342	y	0.13	64	424	64	424	y	0.15	30	175	30	175	y	0.11	41	327	41	327	y	0.11	30	239	30	239	y	0.08	21	239	21	239	y	0.15	56	318	56	318	y	0.13	39	256	39	256	y	0.13	67	440	67	440	y	ENSMUSG00000024039.16	Cbs	chr17	protein_coding	cystathionine beta-synthase
known_NIR_8070	chr17	31852128	31855404	-	31852128	31855632	A5SS	ENSMUST00000155814.8	known	0.99	93	1	93	1	n	0.98	59	1	59	1	n	0.98	117	2	117	2	y	0.98	96	2	96	2	y	1.00	143	0	143	0	n	1.00	87	0	87	0	n	0.98	126	3	126	3	y	1.00	76	0	76	0	n	1.00	94	0	94	0	n	0.98	126	2	126	2	y	1.00	82	0	82	0	n	0.99	159	2	159	2	y	ENSMUSG00000024039.16	Cbs	chr17	protein_coding	cystathionine beta-synthase
known_NIR_8071	chr17	31852128	31855404	-	31852128	31856057	A5SS	ENSMUST00000236853.2	known	0.24	93	291	93	291	y	0.20	59	234	59	234	y	0.40	117	176	117	176	y	0.22	96	342	96	342	y	0.25	143	424	143	424	y	0.33	87	175	87	175	y	0.28	126	327	126	327	y	0.24	76	239	76	239	y	0.28	94	239	94	239	y	0.28	126	318	126	318	y	0.24	82	256	82	256	y	0.27	159	440	159	440	y	ENSMUSG00000024039.16	Cbs	chr17	protein_coding	cystathionine beta-synthase
known_NIR_8072	chr17	31852128	31855632	-	31852128	31856057	A5SS	ENSMUST00000236853.2	known	0.00	1	291	1	291	n	0.00	1	234	1	234	n	0.01	2	176	2	176	y	0.01	2	342	2	342	y	0.00	0	424	0	424	n	0.00	0	175	0	175	n	0.01	3	327	3	327	y	0.00	0	239	0	239	n	0.00	0	239	0	239	n	0.01	2	318	2	318	y	0.00	0	256	0	256	n	0.00	2	440	2	440	y	ENSMUSG00000024039.16	Cbs	chr17	protein_coding	cystathionine beta-synthase
known_NIR_8073	chr17	31867868	31870620	-	31867868	31877627	A5SS	ENSMUST00000236475.2	known	1.00	264	0	264	0	n	0.99	268	4	268	4	y	0.99	252	3	252	3	y	0.98	251	4	251	4	y	0.99	314	2	314	2	y	0.98	126	2	126	2	y	0.99	314	4	314	4	y	0.97	152	4	152	4	y	1.00	220	1	220	1	n	1.00	315	1	315	1	n	0.99	271	2	271	2	y	0.99	314	2	314	2	y	ENSMUSG00000061613.14	U2af1	chr17	protein_coding	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1
known_NIR_8074	chr17	31867868	31871476	-	31867868	31877627	A5SS	ENSMUST00000236475.2	known	1.00	17	0	17	0	n	0.73	11	4	11	4	y	0.40	2	3	2	3	n	0.80	16	4	16	4	y	0.88	14	2	14	2	y	0.71	5	2	5	2	n	0.81	17	4	17	4	y	0.50	4	4	4	4	n	0.90	9	1	9	1	n	0.94	17	1	17	1	n	0.90	18	2	18	2	y	0.89	16	2	16	2	y	ENSMUSG00000061613.14	U2af1	chr17	protein_coding	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1
known_NIR_8075	chr17	31867868;31870686	31870620;31871476	-	31867868	31871476	cassetteExon	ENSMUST00000166526.9	known	0.89	136.5	17	264;9	17	y	0.93	138.5	11	268;9	11	y	0.99	132.0	2	252;12	2	y	0.89	132.5	16	251;14	16	y	0.92	166.0	14	314;18	14	y	0.93	67.0	5	126;8	5	y	0.91	165.5	17	314;17	17	y	0.95	78.0	4	152;4	4	y	0.93	113.0	9	220;6	9	y	0.91	167.0	17	315;19	17	y	0.88	137.5	18	271;4	18	y	0.91	161.5	16	314;9	16	y	ENSMUSG00000061613.14	U2af1	chr17	protein_coding	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1
known_NIR_8076	chr17	31867868;31870686	31870620;31873953	-	31867868;31871542	31871476;31873953	MXE	ENSMUST00000166526.9	known	0.91	242.0	23.0	264;220	17;29	y	0.94	242.5	14.5	268;217	11;18	y	0.97	243.0	8.0	252;234	2;14	y	0.92	228.0	19.0	251;205	16;22	y	0.92	286.5	25.5	314;259	14;37	y	0.91	116.0	11.5	126;106	5;18	y	0.91	279.0	27.5	314;244	17;38	y	0.92	134.5	12.0	152;117	4;20	y	0.94	197.0	11.5	220;174	9;14	y	0.94	274.5	17.5	315;234	17;18	y	0.93	254.0	18.5	271;237	18;19	y	0.94	269.5	16.5	314;225	16;17	y	ENSMUSG00000061613.14	U2af1	chr17	protein_coding	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1
known_NIR_8077	chr17	31867868;31870782	31870620;31873953	-	31867868;31871542	31871476;31873953	MXE	ENSMUST00000166526.9	known	0.85	132.0	23.0	264;0	17;29	n	0.90	134.0	14.5	268;0	11;18	n	0.94	127.0	8.0	252;2	2;14	y	0.87	125.5	19.0	251;0	16;22	n	0.86	157.0	25.5	314;0	14;37	n	0.85	63.0	11.5	126;0	5;18	n	0.85	159.0	27.5	314;4	17;38	y	0.86	76.0	12.0	152;0	4;20	n	0.91	110.0	11.5	220;0	9;14	n	0.90	157.5	17.5	315;0	17;18	n	0.88	135.5	18.5	271;0	18;19	n	0.90	157.0	16.5	314;0	16;17	n	ENSMUSG00000061613.14	U2af1	chr17	protein_coding	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1
known_NIR_8078	chr17	31870686	31873953	-	31871542	31873953	3pMXE	ENSMUST00000235600.2	known	0.88	220	29	220	29	y	0.92	217	18	217	18	y	0.94	234	14	234	14	y	0.90	205	22	205	22	y	0.88	259	37	259	37	y	0.85	106	18	106	18	y	0.87	244	38	244	38	y	0.85	117	20	117	20	y	0.93	174	14	174	14	y	0.93	234	18	234	18	y	0.93	237	19	237	19	y	0.93	225	17	225	17	y	ENSMUSG00000061613.14	U2af1	chr17	protein_coding	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1
known_NIR_8079	chr17	31870686;31871542	31871476;31873953	-	31870686	31873953	cassetteExon	ENSMUST00000014684.6	known	0.08	19.0	220	9;29	220	y	0.06	13.5	217	9;18	217	y	0.05	13.0	234	12;14	234	y	0.08	18.0	205	14;22	205	y	0.10	27.5	259	18;37	259	y	0.11	13.0	106	8;18	106	y	0.10	27.5	244	17;38	244	y	0.09	12.0	117	4;20	117	y	0.05	10.0	174	6;14	174	y	0.07	18.5	234	19;18	234	y	0.05	11.5	237	4;19	237	y	0.05	13.0	225	9;17	225	y	ENSMUSG00000061613.14	U2af1	chr17	protein_coding	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1
known_NIR_8080	chr17	31870782	31873953	-	31871542	31873953	3pMXE	ENSMUST00000235600.2	known	0.00	0	29	0	29	n	0.00	0	18	0	18	n	0.12	2	14	2	14	y	0.00	0	22	0	22	n	0.00	0	37	0	37	n	0.00	0	18	0	18	n	0.10	4	38	4	38	y	0.00	0	20	0	20	n	0.00	0	14	0	14	n	0.00	0	18	0	18	n	0.00	0	19	0	19	n	0.00	0	17	0	17	n	ENSMUSG00000061613.14	U2af1	chr17	protein_coding	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1
known_NIR_8081	chr17	31874040	31877627	-	31867868	31877627	A3SS	ENSMUST00000236475.2	known	1.00	195	0	195	0	n	0.97	140	4	140	4	y	0.98	157	3	157	3	y	0.98	166	4	166	4	y	0.99	213	2	213	2	y	0.98	83	2	83	2	y	0.98	199	4	199	4	y	0.96	107	4	107	4	y	0.99	147	1	147	1	n	1.00	206	1	206	1	n	0.99	165	2	165	2	y	0.99	188	2	188	2	y	ENSMUSG00000061613.14	U2af1	chr17	protein_coding	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1
known_NIR_8082	chr17	32073298	32074646	-	32073298;32074038	32073868;32074646	ES	ENSMUST00000024839.6	known	0.00	0	20.5	0	23;18	n	0.15	2	11.0	2	11;11	y	0.00	0	56.5	0	63;50	n	0.00	0	26.5	0	30;23	n	0.00	0	16.5	0	24;9	n	0.00	0	16.5	0	16;17	n	0.00	0	7.5	0	5;10	n	0.00	0	9.0	0	8;10	n	0.00	0	18.0	0	20;16	n	0.00	0	38.0	0	46;30	n	0.00	0	16.5	0	15;18	n	0.00	0	36.0	0	40;32	n	ENSMUSG00000024042.8	Sik1	chr17	protein_coding	salt inducible kinase 1
known_NIR_8083	chr17	32274289	32274885	+	32274098	32274885	A5SS	ENSMUST00000081339.13	known	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.12	2	15	2	15	y	0.00	0	8	0	8	n	0.21	4	15	4	15	y	0.10	1	9	1	9	n	0.11	1	8	1	8	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.07	1	14	1	14	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	ENSMUSG00000058392.14	Rrp1b	chr17	protein_coding	ribosomal RNA processing 1B
known_NIR_8084	chr17	32425967	32430141	-	32421694	32430141	A3SS	ENSMUST00000003726.16	known	0.12	6	43	6	43	y	0.18	5	23	5	23	y	0.26	9	26	9	26	y	0.26	8	23	8	23	y	0.27	10	27	10	27	y	0.19	5	22	5	22	y	0.29	8	20	8	20	y	0.15	5	29	5	29	y	0.28	10	26	10	26	y	0.19	6	26	6	26	y	0.21	7	27	7	27	y	0.23	10	33	10	33	y	ENSMUSG00000024002.19	Brd4	chr17	protein_coding	bromodomain containing 4
known_NIR_8085	chr17	32441139	32443061	-	32441139	32443058	A5SS	ENSMUST00000003726.16	known	0.87	26	4	26	4	y	0.95	20	1	20	1	n	0.82	37	8	37	8	y	0.86	43	7	43	7	y	0.84	46	9	46	9	y	0.79	22	6	22	6	y	0.74	43	15	43	15	y	0.82	28	6	28	6	y	0.92	34	3	34	3	y	0.88	53	7	53	7	y	0.85	29	5	29	5	y	0.77	27	8	27	8	y	ENSMUSG00000024002.19	Brd4	chr17	protein_coding	bromodomain containing 4
known_NIR_8086	chr17	32443196;32443960	32443833;32444550	-	32443196	32444550	cassetteExon	ENSMUST00000003726.16	known	0.03	0.5	18	1;0	18	n	0.00	0.0	12	0;0	12	n	0.08	3.0	35	3;3	35	y	0.05	1.5	28	3;0	28	n	0.02	1.0	50	2;0	50	n	0.15	2.5	14	3;2	14	y	0.02	1.0	44	2;0	44	n	0.06	2.0	30	2;2	30	y	0.06	1.5	22	3;0	22	n	0.04	1.0	26	1;1	26	n	0.04	1.0	22	0;2	22	n	0.06	2.0	31	2;2	31	y	ENSMUSG00000024002.19	Brd4	chr17	protein_coding	bromodomain containing 4
known_NIR_8087	chr17	32448709	32502833	-	32448709	32472015	A5SS&ES	ENSMUST00000121285.8	known	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.12	2	14	2	14	y	0.00	0	3	0	3	n	0.00	0	19	0	19	n	ENSMUSG00000024002.19	Brd4	chr17	protein_coding	bromodomain containing 4
known_NIR_8088	chr17	32448709	32503037	-	32448709	32472015	A5SS&ES	ENSMUST00000125899.2	known	0.29	2	5	2	5	n	0.30	3	7	3	7	y	0.25	5	15	5	15	y	0.18	3	14	3	14	y	0.23	3	10	3	10	y	0.00	0	5	0	5	n	0.33	4	8	4	8	y	0.33	5	10	5	10	y	0.31	4	9	4	9	y	0.00	0	14	0	14	n	0.40	2	3	2	3	n	0.10	2	19	2	19	y	ENSMUSG00000024002.19	Brd4	chr17	protein_coding	bromodomain containing 4
known_NIR_8089	chr17	32448709	32503037	-	32448709;32472174	32472015;32503037	ES	ENSMUST00000121285.8	known	0.44	2	2.5	2	5;0	n	0.46	3	3.5	3	7;0	n	0.33	5	10.0	5	15;5	y	0.26	3	8.5	3	14;3	y	0.30	3	7.0	3	10;4	y	0.00	0	2.5	0	5;0	n	0.40	4	6.0	4	8;4	y	0.42	5	7.0	5	10;4	y	0.38	4	6.5	4	9;4	y	0.00	0	9.0	0	14;4	n	0.50	2	2.0	2	3;1	n	0.15	2	11.0	2	19;3	y	ENSMUSG00000024002.19	Brd4	chr17	protein_coding	bromodomain containing 4
known_NIR_8090	chr17	32448709	32503492	-	32448709	32503037	5pMXE	ENSMUST00000237692.2	known	0.71	5	2	5	2	n	0.00	0	3	0	3	n	0.55	6	5	6	5	y	0.79	11	3	11	3	y	0.57	4	3	4	3	n	1.00	7	0	7	0	n	0.50	4	4	4	4	n	0.38	3	5	3	5	n	0.50	4	4	4	4	n	1.00	4	0	4	0	n	0.50	2	2	2	2	n	0.78	7	2	7	2	n	ENSMUSG00000024002.19	Brd4	chr17	protein_coding	bromodomain containing 4
known_NIR_8091	chr17	32448709;32472174	32472015;32503492	-	32448709	32503492	cassetteExon	ENSMUST00000127893.8	known	0.41	3.5	5	5;2	5	y	1.00	4.5	0	7;2	0	n	0.68	12.5	6	15;10	6	y	0.45	9.0	11	14;4	11	y	0.64	7.0	4	10;4	4	y	0.36	4.0	7	5;3	7	y	0.58	5.5	4	8;3	4	y	0.68	6.5	3	10;3	3	y	0.56	5.0	4	9;1	4	n	0.65	7.5	4	14;1	4	n	0.67	4.0	2	3;5	2	y	0.62	11.5	7	19;4	7	y	ENSMUSG00000024002.19	Brd4	chr17	protein_coding	bromodomain containing 4
known_NIR_8092	chr17	32472174	32503492	-	32472174	32503037	5pMXE	ENSMUST00000003726.16	known	1.00	2	0	2	0	n	1.00	2	0	2	0	n	0.67	10	5	10	5	y	0.57	4	3	4	3	n	0.50	4	4	4	4	n	1.00	3	0	3	0	n	0.43	3	4	3	4	n	0.43	3	4	3	4	n	0.20	1	4	1	4	n	0.20	1	4	1	4	n	0.83	5	1	5	1	n	0.57	4	3	4	3	n	ENSMUSG00000024002.19	Brd4	chr17	protein_coding	bromodomain containing 4
known_NIR_8093	chr17	32531347	32533085	-	32532236	32533085	A3SS	ENSMUST00000237381.2	known	0.75	39	13	39	13	y	0.79	34	9	34	9	y	0.87	48	7	48	7	y	0.81	38	9	38	9	y	0.69	42	19	42	19	y	0.72	21	8	21	8	y	0.71	47	19	47	19	y	0.81	25	6	25	6	y	0.71	29	12	29	12	y	0.83	50	10	50	10	y	0.86	31	5	31	5	y	0.88	61	8	61	8	y	ENSMUSG00000024045.7	Akap8	chr17	protein_coding	A kinase (PRKA) anchor protein 8
known_NIR_8094	chr17	32531347;32532236	32532079;32533085	-	32531347	32533085	cassetteExon	ENSMUST00000002699.7	known	0.20	10.0	39	7;13	39	y	0.23	10.0	34	11;9	34	y	0.12	6.5	48	6;7	48	y	0.16	7.0	38	5;9	38	y	0.28	16.5	42	14;19	42	y	0.21	5.5	21	3;8	21	y	0.22	13.0	47	7;19	47	y	0.19	6.0	25	6;6	25	y	0.21	7.5	29	3;12	29	y	0.10	5.5	50	1;10	50	n	0.14	5.0	31	5;5	31	y	0.06	4.0	61	0;8	61	n	ENSMUSG00000024045.7	Akap8	chr17	protein_coding	A kinase (PRKA) anchor protein 8
known_NIR_8095	chr17	32535641	32536041	-	32535641	32537745	A5SS	ENSMUST00000235764.2	known	0.92	11	1	11	1	n	1.00	8	0	8	0	n	0.96	26	1	26	1	n	1.00	16	0	16	0	n	0.83	19	4	19	4	y	0.62	5	3	5	3	n	0.92	12	1	12	1	n	0.94	15	1	15	1	n	1.00	11	0	11	0	n	1.00	21	0	21	0	n	1.00	14	0	14	0	n	0.89	17	2	17	2	y	ENSMUSG00000024045.7	Akap8	chr17	protein_coding	A kinase (PRKA) anchor protein 8
known_NIR_8096	chr17	32535641	32537745	-	32536852	32537745	A3SS&ES	ENSMUST00000235205.2	known	0.03	1	32	1	32	n	0.00	0	13	0	13	n	0.03	1	32	1	32	n	0.00	0	25	0	25	n	0.07	4	54	4	54	y	0.09	3	30	3	30	y	0.04	1	23	1	23	n	0.03	1	28	1	28	n	0.00	0	26	0	26	n	0.00	0	46	0	46	n	0.00	0	24	0	24	n	0.04	2	46	2	46	y	ENSMUSG00000024045.7	Akap8	chr17	protein_coding	A kinase (PRKA) anchor protein 8
known_NIR_8097	chr17	32537783	32539432	-	32537783	32540059	A5SS	ENSMUST00000002699.7	known	0.00	0	21	0	21	n	0.00	0	10	0	10	n	0.12	3	21	3	21	y	0.23	5	17	5	17	y	0.05	2	38	2	38	y	0.10	2	19	2	19	y	0.17	2	10	2	10	y	0.04	1	25	1	25	n	0.00	0	20	0	20	n	0.03	1	28	1	28	n	0.11	2	16	2	16	y	0.00	0	21	0	21	n	ENSMUSG00000024045.7	Akap8	chr17	protein_coding	A kinase (PRKA) anchor protein 8
known_NIR_8098	chr17	32537783	32539459	-	32537783	32540059	A5SS	ENSMUST00000002699.7	known	0.05	1	21	1	21	n	0.17	2	10	2	10	y	0.05	1	21	1	21	n	0.06	1	17	1	17	n	0.00	0	38	0	38	n	0.00	0	19	0	19	n	0.00	0	10	0	10	n	0.00	0	25	0	25	n	0.00	0	20	0	20	n	0.03	1	28	1	28	n	0.00	0	16	0	16	n	0.09	2	21	2	21	y	ENSMUSG00000024045.7	Akap8	chr17	protein_coding	A kinase (PRKA) anchor protein 8
known_NIR_8099	chr17	32537783	32539881	-	32537783	32540059	A5SS	ENSMUST00000002699.7	known	0.00	0	21	0	21	n	0.00	0	10	0	10	n	0.00	0	21	0	21	n	0.00	0	17	0	17	n	0.03	1	38	1	38	n	0.00	0	19	0	19	n	0.29	4	10	4	10	y	0.00	0	25	0	25	n	0.00	0	20	0	20	n	0.10	3	28	3	28	y	0.06	1	16	1	16	n	0.00	0	21	0	21	n	ENSMUSG00000024045.7	Akap8	chr17	protein_coding	A kinase (PRKA) anchor protein 8
known_NIR_8100	chr17	32540995	32551453	-	32540965	32551453	A3SS	ENSMUST00000236039.2	known	0.00	0	72	0	72	n	0.03	3	101	3	101	y	0.01	1	79	1	79	n	0.01	1	71	1	71	n	0.03	3	99	3	99	y	0.00	0	39	0	39	n	0.02	2	106	2	106	y	0.00	0	54	0	54	n	0.00	0	68	0	68	n	0.01	1	96	1	96	n	0.00	0	94	0	94	n	0.00	0	85	0	85	n	ENSMUSG00000002625.11	Akap8l	chr17	protein_coding	A kinase (PRKA) anchor protein 8-like
known_NIR_8101	chr17	32552118	32553562	-	32552118	32552880	5pMXE	ENSMUST00000236618.2	known	0.64	23	13	23	13	y	0.60	18	12	18	12	y	0.62	25	15	25	15	y	0.68	27	13	27	13	y	0.69	36	16	36	16	y	0.53	16	14	16	14	y	0.73	37	14	37	14	y	0.59	10	7	10	7	y	0.77	37	11	37	11	y	0.88	51	7	51	7	y	0.66	21	11	21	11	y	0.68	25	12	25	12	y	ENSMUSG00000002625.11	Akap8l	chr17	protein_coding	A kinase (PRKA) anchor protein 8-like
known_NIR_8102	chr17	32552118;32552954	32552880;32553562	-	32552118	32553562	cassetteExon	ENSMUST00000050214.9	known	0.25	7.5	23	13;2	23	y	0.25	6.0	18	12;0	18	n	0.23	7.5	25	15;0	25	n	0.21	7.0	27	13;1	27	n	0.19	8.5	36	16;1	36	n	0.30	7.0	16	14;0	16	n	0.16	7.0	37	14;0	37	n	0.26	3.5	10	7;0	10	n	0.13	5.5	37	11;0	37	n	0.09	5.0	51	7;3	51	y	0.21	5.5	21	11;0	21	n	0.19	6.0	25	12;0	25	n	ENSMUSG00000002625.11	Akap8l	chr17	protein_coding	A kinase (PRKA) anchor protein 8-like
known_NIR_8103	chr17	32552118;32553019	32552880;32553562	-	32552118	32553562	cassetteExon	ENSMUST00000050214.9	known	0.22	6.5	23	13;0	23	n	0.32	8.5	18	12;5	18	y	0.26	9.0	25	15;3	25	y	0.23	8.0	27	13;3	27	y	0.22	10.0	36	16;4	36	y	0.32	7.5	16	14;1	16	n	0.21	10.0	37	14;6	37	y	0.26	3.5	10	7;0	10	n	0.16	7.0	37	11;3	37	y	0.11	6.0	51	7;5	51	y	0.21	5.5	21	11;0	21	n	0.29	10.0	25	12;8	25	y	ENSMUSG00000002625.11	Akap8l	chr17	protein_coding	A kinase (PRKA) anchor protein 8-like
known_NIR_8104	chr17	32553670;32554144	32554085;32554537	-	32553670	32554537	cassetteExon	ENSMUST00000236039.2	known	0.26	11.5	32	11;12	32	y	0.29	16.0	40	19;13	40	y	0.24	16.5	51	13;20	51	y	0.47	26.0	29	21;31	29	y	0.35	32.0	59	29;35	59	y	0.51	18.5	18	17;20	18	y	0.28	17.0	44	16;18	44	y	0.58	19.5	14	21;18	14	y	0.40	25.0	38	26;24	38	y	0.30	23.5	54	24;23	54	y	0.44	28.0	35	25;31	35	y	0.41	30.5	43	32;29	43	y	ENSMUSG00000002625.11	Akap8l	chr17	protein_coding	A kinase (PRKA) anchor protein 8-like
known_NIR_8105	chr17	32555712	32557431	-	32555712	32557245	A5SS	ENSMUST00000236039.2	known	0.11	5	39	5	39	y	0.13	5	33	5	33	y	0.09	6	60	6	60	y	0.09	5	48	5	48	y	0.05	4	76	4	76	y	0.05	1	20	1	20	n	0.08	5	57	5	57	y	0.00	0	43	0	43	n	0.08	5	56	5	56	y	0.10	6	55	6	55	y	0.06	3	46	3	46	y	0.14	8	48	8	48	y	ENSMUSG00000002625.11	Akap8l	chr17	protein_coding	A kinase (PRKA) anchor protein 8-like
known_NIR_8106	chr17	32555712	32557431	-	32555712;32557328	32557245;32557431	ES	ENSMUST00000236503.2	known	0.14	5	29.5	5	39;20	y	0.15	5	28.0	5	33;23	y	0.13	6	39.0	6	60;18	y	0.14	5	32.0	5	48;16	y	0.07	4	51.0	4	76;26	y	0.05	1	17.5	1	20;15	n	0.11	5	40.5	5	57;24	y	0.00	0	27.0	0	43;11	n	0.13	5	33.0	5	56;10	y	0.15	6	33.0	6	55;11	y	0.08	3	33.0	3	46;20	y	0.19	8	34.0	8	48;20	y	ENSMUSG00000002625.11	Akap8l	chr17	protein_coding	A kinase (PRKA) anchor protein 8-like
known_NIR_8107	chr17	32576958	32577917	-	32576955	32577917	A3SS	ENSMUST00000170617.8	known	1.00	9	0	9	0	n	0.79	15	4	15	4	y	0.96	24	1	24	1	n	0.90	27	3	27	3	y	0.86	25	4	25	4	y	1.00	16	0	16	0	n	0.84	16	3	16	3	y	0.88	15	2	15	2	y	1.00	15	0	15	0	n	0.88	22	3	22	3	y	0.92	22	2	22	2	y	0.95	35	2	35	2	y	ENSMUSG00000024050.19	Wiz	chr17	protein_coding	widely-interspaced zinc finger motifs
known_NIR_8108	chr17	32578468;32579401	32579012;32580435	-	32578468	32580435	cassetteExon	ENSMUST00000170617.8	known	0.64	16.0	9	23;9	9	y	0.45	6.5	8	7;6	8	y	0.61	17.0	11	20;14	11	y	0.71	15.0	6	12;18	6	y	0.64	21.5	12	24;19	12	y	0.87	13.5	2	18;9	2	y	0.71	12.5	5	18;7	5	y	0.82	9.0	2	13;5	2	y	0.70	9.5	4	13;6	4	y	0.66	13.5	7	16;11	7	y	0.88	14.0	2	18;10	2	y	0.71	17.0	7	17;17	7	y	ENSMUSG00000024050.19	Wiz	chr17	protein_coding	widely-interspaced zinc finger motifs
known_NIR_8109	chr17	32580938;32581937	32581767;32586798	-	32580938	32586798	cassetteExon	ENSMUST00000170617.8	known	0.78	7.0	2	14;0	2	n	0.88	7.0	1	11;3	1	n	0.88	7.0	1	13;1	1	n	0.93	14.0	1	26;2	1	n	0.89	8.5	1	16;1	1	n	0.78	3.5	1	7;0	1	n	0.83	10.0	2	18;2	2	y	1.00	5.5	0	11;0	0	n	0.85	5.5	1	10;1	1	n	1.00	12.0	0	21;3	0	n	0.78	3.5	1	6;1	1	n	0.77	10.0	3	17;3	3	y	ENSMUSG00000024050.19	Wiz	chr17	protein_coding	widely-interspaced zinc finger motifs
known_NIR_8110	chr17	32606791	32608234	-	32606791	32607578	5pMXE	ENSMUST00000170617.8	known	-	-	-	-	-	-	1.00	2	0	2	0	n	1.00	4	0	4	0	n	-	-	-	-	-	-	0.75	3	1	3	1	n	1.00	2	0	2	0	n	0.80	8	2	8	2	y	0.43	3	4	3	4	n	1.00	2	0	2	0	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.50	2	2	2	2	n	ENSMUSG00000024050.19	Wiz	chr17	protein_coding	widely-interspaced zinc finger motifs
known_NIR_8111	chr17	32632448	32635852	-	32632448	32634780	A5SS&ES	ENSMUST00000114455.3	known	0.00	1	315	1	315	n	0.00	1	350	1	350	n	0.00	0	362	0	362	n	0.00	1	300	1	300	n	0.01	4	478	4	478	y	0.01	2	283	2	283	y	0.01	3	434	3	434	y	0.00	0	281	0	281	n	0.01	3	275	3	275	y	0.00	1	376	1	376	n	0.00	0	280	0	280	n	0.00	0	561	0	561	n	ENSMUSG00000079563.11	Pglyrp2	chr17	protein_coding	peptidoglycan recognition protein 2
known_NIR_8112	chr17	32632448	32635852	-	32632448;32635077	32634780;32635852	ES	ENSMUST00000236386.2	known	0.00	1	290.0	1	315;265	n	0.00	1	314.5	1	350;279	n	0.00	0	326.5	0	362;291	n	0.00	1	308.5	1	300;317	n	0.01	4	480.0	4	478;482	y	0.01	2	265.0	2	283;247	y	0.01	3	416.5	3	434;399	y	0.00	0	248.0	0	281;215	n	0.01	3	285.5	3	275;296	y	0.00	1	382.5	1	376;389	n	0.00	0	299.0	0	280;318	n	0.00	0	513.5	0	561;466	n	ENSMUSG00000079563.11	Pglyrp2	chr17	protein_coding	peptidoglycan recognition protein 2
known_NIR_8113	chr17	32632448;32636062	32635852;32637082	-	32632448;32635077	32634780;32637082	MXE	ENSMUST00000237165.2	known	0.02	3.0	159.0	1;5	315;3	n	0.01	1.5	176.0	1;2	350;2	n	0.02	4.0	182.5	0;8	362;3	n	0.02	2.5	151.0	1;4	300;2	n	0.03	7.0	241.5	4;10	478;5	y	0.01	2.0	142.0	2;2	283;1	n	0.04	8.0	218.5	3;13	434;3	y	0.01	2.0	143.0	0;4	281;5	n	0.03	4.5	137.5	3;6	275;0	n	0.02	3.0	189.5	1;5	376;3	n	0.01	2.0	142.0	0;4	280;4	n	0.03	8.0	282.0	0;16	561;3	n	ENSMUSG00000079563.11	Pglyrp2	chr17	protein_coding	peptidoglycan recognition protein 2
known_NIR_8114	chr17	32635077	32635881	-	32635077	32635852	A5SS	ENSMUST00000236386.2	known	0.03	7	265	7	265	y	0.01	3	279	3	279	y	0.01	3	291	3	291	y	0.03	11	317	11	317	y	0.03	13	482	13	482	y	0.01	3	247	3	247	y	0.02	9	399	9	399	y	0.01	2	215	2	215	y	0.02	6	296	6	296	y	0.02	8	389	8	389	y	0.02	7	318	7	318	y	0.02	10	466	10	466	y	ENSMUSG00000079563.11	Pglyrp2	chr17	protein_coding	peptidoglycan recognition protein 2
known_NIR_8115	chr17	32635077	32637082	-	32635077	32635852	A5SS&ES	ENSMUST00000236386.2	known	0.01	3	265	3	265	y	0.01	2	279	2	279	y	0.01	3	291	3	291	y	0.01	2	317	2	317	y	0.01	5	482	5	482	y	0.00	1	247	1	247	n	0.01	3	399	3	399	y	0.02	5	215	5	215	y	0.00	0	296	0	296	n	0.01	3	389	3	389	y	0.01	4	318	4	318	y	0.01	3	466	3	466	y	ENSMUSG00000079563.11	Pglyrp2	chr17	protein_coding	peptidoglycan recognition protein 2
known_NIR_8116	chr17	32635077	32637082	-	32635077	32635881	A5SS&ES	ENSMUST00000114455.3	known	0.30	3	7	3	7	y	0.40	2	3	2	3	n	0.50	3	3	3	3	n	0.15	2	11	2	11	y	0.28	5	13	5	13	y	0.25	1	3	1	3	n	0.25	3	9	3	9	y	0.71	5	2	5	2	n	0.00	0	6	0	6	n	0.27	3	8	3	8	y	0.36	4	7	4	7	y	0.23	3	10	3	10	y	ENSMUSG00000079563.11	Pglyrp2	chr17	protein_coding	peptidoglycan recognition protein 2
known_NIR_8117	chr17	32635077	32637082	-	32635077;32636062	32635852;32637082	ES	ENSMUST00000237082.2	known	0.02	3	135.0	3	265;5	y	0.01	2	140.5	2	279;2	y	0.02	3	149.5	3	291;8	y	0.01	2	160.5	2	317;4	y	0.02	5	246.0	5	482;10	y	0.01	1	124.5	1	247;2	n	0.01	3	206.0	3	399;13	y	0.04	5	109.5	5	215;4	y	0.00	0	151.0	0	296;6	n	0.01	3	197.0	3	389;5	y	0.02	4	161.0	4	318;4	y	0.01	3	241.0	3	466;16	y	ENSMUSG00000079563.11	Pglyrp2	chr17	protein_coding	peptidoglycan recognition protein 2
known_NIR_8118	chr17	32635077;32636062	32635881;32637082	-	32635077	32637082	cassetteExon	ENSMUST00000237165.2	known	0.67	6.0	3	7;5	3	y	0.56	2.5	2	3;2	2	n	0.65	5.5	3	3;8	3	y	0.79	7.5	2	11;4	2	y	0.70	11.5	5	13;10	5	y	0.71	2.5	1	3;2	1	n	0.79	11.0	3	9;13	3	y	0.38	3.0	5	2;4	5	y	1.00	6.0	0	6;6	0	n	0.68	6.5	3	8;5	3	y	0.58	5.5	4	7;4	4	y	0.81	13.0	3	10;16	3	y	ENSMUSG00000079563.11	Pglyrp2	chr17	protein_coding	peptidoglycan recognition protein 2
known_NIR_8119	chr17	32636062	32637082	-	32636062	32636955	A5SS	ENSMUST00000236386.2	known	0.02	5	227	5	227	y	0.01	2	216	2	216	y	0.03	8	259	8	259	y	0.02	4	239	4	239	y	0.02	10	447	10	447	y	0.01	2	262	2	262	y	0.04	13	316	13	316	y	0.02	4	232	4	232	y	0.03	6	225	6	225	y	0.02	5	318	5	318	y	0.02	4	234	4	234	y	0.04	16	416	16	416	y	ENSMUSG00000079563.11	Pglyrp2	chr17	protein_coding	peptidoglycan recognition protein 2
known_NIR_8120	chr17	32725552	32725868	+	32725138	32725868	A5SS	ENSMUST00000237003.2	known	1.00	13	0	13	0	n	1.00	9	0	9	0	n	1.00	19	0	19	0	n	1.00	16	0	16	0	n	1.00	22	0	22	0	n	1.00	15	0	15	0	n	0.91	10	1	10	1	n	0.87	13	2	13	2	y	1.00	9	0	9	0	n	1.00	18	0	18	0	n	0.88	15	2	15	2	y	1.00	23	0	23	0	n	ENSMUSG00000091586.3	Cyp4f17	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 17
known_NIR_8121	chr17	32905231	32916747	+	32905231	32909618	3pMXE	ENSMUST00000167789.8	known	0.00	1	203	1	203	n	0.02	3	159	3	159	y	0.00	0	50	0	50	n	0.00	0	330	0	330	n	0.00	1	310	1	310	n	0.00	0	67	0	67	n	0.00	0	270	0	270	n	0.00	0	121	0	121	n	0.00	0	253	0	253	n	0.00	0	330	0	330	n	0.00	0	242	0	242	n	0.00	0	376	0	376	n	ENSMUSG00000073424.10	Cyp4f15	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 15
known_NIR_8122	chr17	32914369	32916747	+	32905231	32916747	A5SS	ENSMUST00000163907.2	known	1.00	227	1	227	1	n	0.99	223	3	223	3	y	1.00	50	0	50	0	n	1.00	372	0	372	0	n	1.00	280	1	280	1	n	1.00	81	0	81	0	n	1.00	317	0	317	0	n	1.00	108	0	108	0	n	1.00	284	0	284	0	n	1.00	467	0	467	0	n	1.00	315	0	315	0	n	1.00	425	0	425	0	n	ENSMUSG00000073424.10	Cyp4f15	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 15
known_NIR_8123	chr17	32919308	32920878	+	32919308	32920857	A3SS	ENSMUST00000168171.8	known	1.00	309	0	309	0	n	0.99	253	2	253	2	y	1.00	63	0	63	0	n	0.99	429	3	429	3	y	1.00	312	0	312	0	n	1.00	103	0	103	0	n	0.99	376	4	376	4	y	1.00	127	0	127	0	n	0.99	317	2	317	2	y	1.00	468	0	468	0	n	0.99	369	2	369	2	y	0.99	436	3	436	3	y	ENSMUSG00000073424.10	Cyp4f15	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 15
known_NIR_8124	chr17	32996501	33006257	-	32996501	33007112	A5SS	ENSMUST00000159086.10	known	0.06	1	17	1	17	n	0.33	2	4	2	4	n	0.00	0	11	0	11	n	0.00	0	21	0	21	n	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.10	2	18	2	18	y	0.12	2	15	2	15	y	0.00	0	12	0	12	n	0.18	3	14	3	14	y	0.11	1	8	1	8	n	0.25	4	12	4	12	y	ENSMUSG00000024298.16	Zfp871	chr17	protein_coding	zinc finger protein 871
known_NIR_8125	chr17	33103139	33104931	-	33103139;33104737	33104677;33104931	ES	ENSMUST00000228075.3	known	0.00	0	5.5	0	6;5	n	0.40	3	4.5	3	6;3	y	0.00	0	6.5	0	4;9	n	0.00	0	7.5	0	9;6	n	0.08	1	11.5	1	15;8	n	0.00	0	7.0	0	7;7	n	0.00	0	9.5	0	10;9	n	0.22	1	3.5	1	4;3	n	0.00	0	10.5	0	11;10	n	0.31	2	4.5	2	5;4	y	0.10	1	9.5	1	10;9	n	0.00	0	10.0	0	5;15	n	ENSMUSG00000095325.4	Zfp870	chr17	protein_coding	zinc finger protein 870
known_NIR_8126	chr17	33135860	33136119	-	33135860	33136277	A5SS	ENSMUST00000235058.2	known	1.00	11	0	11	0	n	1.00	4	0	4	0	n	-	-	-	-	-	-	0.87	13	2	13	2	y	1.00	5	0	5	0	n	-	-	-	-	-	-	1.00	5	0	5	0	n	1.00	1	0	1	0	n	0.86	12	2	12	2	y	1.00	17	0	17	0	n	0.83	10	2	10	2	y	0.74	17	6	17	6	y	ENSMUSG00000024292.16	Cyp4f14	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 14
known_NIR_8127	chr17	33135860	33136119	-	33135863	33136119	A3SS	ENSMUST00000179434.8	known	0.31	11	24	11	24	y	0.50	4	4	4	4	n	0.00	0	1	0	1	n	0.43	13	17	13	17	y	0.22	5	18	5	18	y	0.00	0	1	0	1	n	0.45	5	6	5	6	y	1.00	1	0	1	0	n	0.25	12	36	12	36	y	0.44	17	22	17	22	y	0.31	10	22	10	22	y	0.35	17	31	17	31	y	ENSMUSG00000024292.16	Cyp4f14	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 14
known_NIR_8128	chr17	33135863	33136277	-	33135860	33136277	A3SS	ENSMUST00000235058.2	known	1.00	3	0	3	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.60	3	2	3	2	n	1.00	2	0	2	0	n	-	-	-	-	-	-	1.00	2	0	2	0	n	-	-	-	-	-	-	0.60	3	2	3	2	n	1.00	4	0	4	0	n	0.50	2	2	2	2	n	0.45	5	6	5	6	y	ENSMUSG00000024292.16	Cyp4f14	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 14
known_NIR_8129	chr17	33135863	33136277	-	33135863	33136119	A5SS	ENSMUST00000179434.8	known	0.11	3	24	3	24	y	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.15	3	17	3	17	y	0.10	2	18	2	18	y	0.00	0	1	0	1	n	0.25	2	6	2	6	n	-	-	-	-	-	-	0.08	3	36	3	36	y	0.15	4	22	4	22	y	0.08	2	22	2	22	y	0.14	5	31	5	31	y	ENSMUSG00000024292.16	Cyp4f14	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 14
known_NIR_8130	chr17	33149636	33151603	-	33149636;33151514	33151387;33151603	ES	ENSMUST00000075253.13	known	0.01	1	125.5	1	131;120	n	0.00	0	125.0	0	120;130	n	0.00	0	95.0	0	77;113	n	0.00	0	143.5	0	133;154	n	0.00	0	169.0	0	186;152	n	0.00	0	56.0	0	65;47	n	0.01	1	152.5	1	162;143	n	0.00	0	78.5	0	74;83	n	0.00	0	138.0	0	127;149	n	0.02	4	204.0	4	201;207	y	0.00	0	139.5	0	132;147	n	0.01	2	168.5	2	159;178	y	ENSMUSG00000024055.16	Cyp4f13	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 13
known_NIR_8131	chr17	33149636	33151603	-	33151514	33151603	3pMXE	ENSMUST00000141325.2	known	0.01	1	120	1	120	n	0.00	0	130	0	130	n	0.00	0	113	0	113	n	0.00	0	154	0	154	n	0.00	0	152	0	152	n	0.00	0	47	0	47	n	0.01	1	143	1	143	n	0.00	0	83	0	83	n	0.00	0	149	0	149	n	0.02	4	207	4	207	y	0.00	0	147	0	147	n	0.01	2	178	2	178	y	ENSMUSG00000024055.16	Cyp4f13	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 13
known_NIR_8132	chr17	33149636	33160030	-	33151656	33160030	3pMXE	ENSMUST00000145683.2	known	0.01	1	140	1	140	n	0.00	0	124	0	124	n	0.00	0	105	0	105	n	0.01	1	158	1	158	n	0.01	2	162	2	162	y	0.00	0	50	0	50	n	0.00	0	145	0	145	n	0.00	0	82	0	82	n	0.00	0	153	0	153	n	0.00	0	204	0	204	n	0.00	0	145	0	145	n	0.00	0	174	0	174	n	ENSMUSG00000024055.16	Cyp4f13	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 13
known_NIR_8133	chr17	33149636	33165779	-	33160174	33165779	3pMXE	ENSMUST00000146718.2	known	0.01	1	145	1	145	n	0.02	2	98	2	98	y	0.01	1	98	1	98	n	0.02	4	179	4	179	y	0.02	3	179	3	179	y	0.00	0	57	0	57	n	0.00	0	180	0	180	n	0.00	0	84	0	84	n	0.00	0	170	0	170	n	0.00	1	214	1	214	n	0.00	0	166	0	166	n	0.01	2	195	2	195	y	ENSMUSG00000024055.16	Cyp4f13	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 13
known_NIR_8134	chr17	33149636;33151656	33151387;33160030	-	33149636	33160030	cassetteExon	ENSMUST00000137222.8	known	0.99	135.5	1	131;140	1	n	1.00	122.0	0	120;124	0	n	1.00	91.0	0	77;105	0	n	0.99	145.5	1	133;158	1	n	0.99	174.0	2	186;162	2	y	1.00	57.5	0	65;50	0	n	1.00	153.5	0	162;145	0	n	1.00	78.0	0	74;82	0	n	1.00	140.0	0	127;153	0	n	1.00	202.5	0	201;204	0	n	1.00	138.5	0	132;145	0	n	1.00	166.5	0	159;174	0	n	ENSMUSG00000024055.16	Cyp4f13	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 13
known_NIR_8135	chr17	33149636;33151656	33151387;33165779	-	33149636	33165779	cassetteExon	ENSMUST00000139353.8	known	0.99	66.5	1	131;2	1	n	0.97	60.0	2	120;0	2	n	0.97	38.5	1	77;0	1	n	0.94	67.0	4	133;1	4	n	0.97	94.0	3	186;2	3	y	1.00	33.0	0	65;1	0	n	1.00	82.5	0	162;3	0	n	1.00	37.0	0	74;0	0	n	1.00	65.0	0	127;3	0	n	0.99	101.0	1	201;1	1	n	1.00	67.0	0	132;2	0	n	0.98	79.5	2	159;0	2	n	ENSMUSG00000024055.16	Cyp4f13	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 13
known_NIR_8136	chr17	33149636;33151656	33151387;33165779	-	33149636;33160174	33160030;33165779	MXE	ENSMUST00000137222.8	known	0.48	66.5	73.0	131;2	1;145	n	0.55	60.0	49.0	120;0	0;98	n	0.44	38.5	49.0	77;0	0;98	n	0.43	67.0	90.0	133;1	1;179	n	0.51	94.0	90.5	186;2	2;179	y	0.54	33.0	28.5	65;1	0;57	n	0.48	82.5	90.0	162;3	0;180	n	0.47	37.0	42.0	74;0	0;84	n	0.43	65.0	85.0	127;3	0;170	n	0.49	101.0	107.0	201;1	0;214	n	0.45	67.0	83.0	132;2	0;166	n	0.45	79.5	97.5	159;0	0;195	n	ENSMUSG00000024055.16	Cyp4f13	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 13
known_NIR_8137	chr17	33149636;33160174	33160030;33165779	-	33149636	33165779	cassetteExon	ENSMUST00000139353.8	known	0.99	73.0	1	1;145	1	n	0.96	49.0	2	0;98	2	n	0.98	49.0	1	0;98	1	n	0.96	90.0	4	1;179	4	n	0.97	90.5	3	2;179	3	y	1.00	28.5	0	0;57	0	n	1.00	90.0	0	0;180	0	n	1.00	42.0	0	0;84	0	n	1.00	85.0	0	0;170	0	n	0.99	107.0	1	0;214	1	n	1.00	83.0	0	0;166	0	n	0.98	97.5	2	0;195	2	n	ENSMUSG00000024055.16	Cyp4f13	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 13
known_NIR_8138	chr17	33149636;33160174	33160030;33166287	-	33149636;33165977	33151387;33166287	MXE	ENSMUST00000234683.2	known	0.02	2.0	116.5	1;3	131;102	n	0.02	1.5	93.0	0;3	120;66	n	0.02	1.5	74.0	0;3	77;71	n	0.02	3.0	140.0	1;5	133;147	n	0.03	4.5	164.5	2;7	186;143	y	0.04	2.0	52.5	0;4	65;40	n	0.01	2.0	146.0	0;4	162;130	n	0.02	1.5	66.0	0;3	74;58	n	0.03	4.0	120.0	0;8	127;113	n	0.03	5.5	173.5	0;11	201;146	n	0.01	1.5	131.5	0;3	132;131	n	0.02	2.5	160.5	0;5	159;162	n	ENSMUSG00000024055.16	Cyp4f13	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 13
known_NIR_8139	chr17	33149636;33160174	33160030;33166287	-	33149636;33165977	33165779;33166287	MXE	ENSMUST00000139353.8	known	0.04	2.0	51.5	1;3	1;102	n	0.04	1.5	34.0	0;3	2;66	n	0.04	1.5	36.0	0;3	1;71	n	0.04	3.0	75.5	1;5	4;147	n	0.06	4.5	73.0	2;7	3;143	y	0.09	2.0	20.0	0;4	0;40	n	0.03	2.0	65.0	0;4	0;130	n	0.05	1.5	29.0	0;3	0;58	n	0.07	4.0	56.5	0;8	0;113	n	0.07	5.5	73.5	0;11	1;146	n	0.02	1.5	65.5	0;3	0;131	n	0.03	2.5	82.0	0;5	2;162	n	ENSMUSG00000024055.16	Cyp4f13	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 13
known_NIR_8140	chr17	33149636;33165977	33165779;33166287	-	33149636;33160174	33151387;33166287	MXE	ENSMUST00000234083.2	known	0.43	51.5	67.0	1;102	131;3	n	0.36	34.0	61.5	2;66	120;3	y	0.47	36.0	40.0	1;71	77;3	n	0.52	75.5	69.0	4;147	133;5	y	0.43	73.0	96.5	3;143	186;7	y	0.37	20.0	34.5	0;40	65;4	n	0.44	65.0	83.0	0;130	162;4	n	0.43	29.0	38.5	0;58	74;3	n	0.46	56.5	67.5	0;113	127;8	n	0.41	73.5	106.0	1;146	201;11	n	0.49	65.5	67.5	0;131	132;3	n	0.50	82.0	82.0	2;162	159;5	y	ENSMUSG00000024055.16	Cyp4f13	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 13
known_NIR_8141	chr17	33151656	33160030	-	33157181	33160030	3pMXE	ENSMUST00000234532.2	known	1.00	140	0	140	0	n	0.99	124	1	124	1	n	1.00	105	0	105	0	n	1.00	158	0	158	0	n	1.00	162	0	162	0	n	1.00	50	0	50	0	n	0.99	145	2	145	2	y	1.00	82	0	82	0	n	1.00	153	0	153	0	n	1.00	204	0	204	0	n	1.00	145	0	145	0	n	1.00	174	0	174	0	n	ENSMUSG00000024055.16	Cyp4f13	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 13
known_NIR_8142	chr17	33151656	33165779	-	33151656	33160030	A5SS&ES	ENSMUST00000145683.2	known	0.01	2	140	2	140	y	0.00	0	124	0	124	n	0.00	0	105	0	105	n	0.01	1	158	1	158	n	0.01	2	162	2	162	y	0.02	1	50	1	50	n	0.02	3	145	3	145	y	0.00	0	82	0	82	n	0.02	3	153	3	153	y	0.00	1	204	1	204	n	0.01	2	145	2	145	y	0.00	0	174	0	174	n	ENSMUSG00000024055.16	Cyp4f13	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 13
known_NIR_8143	chr17	33151656	33165779	-	33151656;33160174	33160030;33165779	ES	ENSMUST00000075253.13	known	0.01	2	142.5	2	140;145	y	0.00	0	111.0	0	124;98	n	0.00	0	101.5	0	105;98	n	0.01	1	168.5	1	158;179	n	0.01	2	170.5	2	162;179	y	0.02	1	53.5	1	50;57	n	0.02	3	162.5	3	145;180	y	0.00	0	83.0	0	82;84	n	0.02	3	161.5	3	153;170	y	0.00	1	209.0	1	204;214	n	0.01	2	155.5	2	145;166	y	0.00	0	184.5	0	174;195	n	ENSMUSG00000024055.16	Cyp4f13	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 13
known_NIR_8144	chr17	33151656	33165779	-	33160174	33165779	3pMXE	ENSMUST00000146718.2	known	0.01	2	145	2	145	y	0.00	0	98	0	98	n	0.00	0	98	0	98	n	0.01	1	179	1	179	n	0.01	2	179	2	179	y	0.02	1	57	1	57	n	0.02	3	180	3	180	y	0.00	0	84	0	84	n	0.02	3	170	3	170	y	0.00	1	214	1	214	n	0.01	2	166	2	166	y	0.00	0	195	0	195	n	ENSMUSG00000024055.16	Cyp4f13	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 13
known_NIR_8145	chr17	33151656;33157181	33157046;33160030	-	33151656	33160030	cassetteExon	ENSMUST00000075253.13	known	0.00	0.0	140	0;0	140	n	0.01	1.5	124	2;1	124	n	0.02	2.0	105	4;0	105	n	0.01	2.0	158	4;0	158	n	0.01	1.0	162	2;0	162	n	0.01	0.5	50	1;0	50	n	0.03	4.0	145	6;2	145	y	0.03	2.5	82	5;0	82	n	0.01	2.0	153	4;0	153	n	0.01	2.0	204	4;0	204	n	0.01	1.5	145	3;0	145	n	0.00	0.5	174	1;0	174	n	ENSMUSG00000024055.16	Cyp4f13	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 13
known_NIR_8146	chr17	33151656;33160174	33160030;33166287	-	33151656;33165977	33165779;33166287	MXE	ENSMUST00000234946.2	known	0.58	71.5	52.0	140;3	2;102	y	0.66	63.5	33.0	124;3	0;66	n	0.60	54.0	35.5	105;3	0;71	n	0.52	81.5	74.0	158;5	1;147	n	0.54	84.5	72.5	162;7	2;143	y	0.57	27.0	20.5	50;4	1;40	n	0.53	74.5	66.5	145;4	3;130	y	0.59	42.5	29.0	82;3	0;58	n	0.58	80.5	58.0	153;8	3;113	y	0.59	107.5	73.5	204;11	1;146	n	0.53	74.0	66.5	145;3	2;131	y	0.52	89.5	81.0	174;5	0;162	n	ENSMUSG00000024055.16	Cyp4f13	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 13
known_NIR_8147	chr17	33160174	33165763	-	33160174	33165779	A5SS	ENSMUST00000075253.13	known	0.01	1	145	1	145	n	0.03	3	98	3	98	y	0.04	4	98	4	98	y	0.01	1	179	1	179	n	0.01	2	179	2	179	y	0.00	0	57	0	57	n	0.02	4	180	4	180	y	0.00	0	84	0	84	n	0.01	1	170	1	170	n	0.00	0	214	0	214	n	0.00	0	166	0	166	n	0.00	0	195	0	195	n	ENSMUSG00000024055.16	Cyp4f13	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 13
known_NIR_8148	chr17	33160174	33166287	-	33160174	33165779	A5SS&ES	ENSMUST00000137222.8	known	0.02	3	145	3	145	y	0.03	3	98	3	98	y	0.03	3	98	3	98	y	0.03	5	179	5	179	y	0.04	7	179	7	179	y	0.07	4	57	4	57	y	0.02	4	180	4	180	y	0.03	3	84	3	84	y	0.04	8	170	8	170	y	0.05	11	214	11	214	y	0.02	3	166	3	166	y	0.03	5	195	5	195	y	ENSMUSG00000024055.16	Cyp4f13	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 13
known_NIR_8149	chr17	33160174	33166287	-	33160174;33165977	33165779;33166287	ES	ENSMUST00000075253.13	known	0.02	3	123.5	3	145;102	y	0.04	3	82.0	3	98;66	y	0.03	3	84.5	3	98;71	y	0.03	5	163.0	5	179;147	y	0.04	7	161.0	7	179;143	y	0.08	4	48.5	4	57;40	y	0.03	4	155.0	4	180;130	y	0.04	3	71.0	3	84;58	y	0.05	8	141.5	8	170;113	y	0.06	11	180.0	11	214;146	y	0.02	3	148.5	3	166;131	y	0.03	5	178.5	5	195;162	y	ENSMUSG00000024055.16	Cyp4f13	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 13
known_NIR_8150	chr17	33160174;33165977	33165763;33166287	-	33160174	33166287	cassetteExon	ENSMUST00000234083.2	known	0.94	51.5	3	1;102	3	n	0.92	34.5	3	3;66	3	y	0.93	37.5	3	4;71	3	y	0.94	74.0	5	1;147	5	n	0.91	72.5	7	2;143	7	y	0.83	20.0	4	0;40	4	n	0.94	67.0	4	4;130	4	y	0.91	29.0	3	0;58	3	n	0.88	57.0	8	1;113	8	n	0.87	73.0	11	0;146	11	n	0.96	65.5	3	0;131	3	n	0.94	81.0	5	0;162	5	n	ENSMUSG00000024055.16	Cyp4f13	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 13
known_NIR_8151	chr17	33165977	33166310	-	33165977	33166287	A5SS	ENSMUST00000075253.13	known	0.00	0	102	0	102	n	0.00	0	66	0	66	n	0.00	0	71	0	71	n	0.00	0	147	0	147	n	0.02	3	143	3	143	y	0.00	0	40	0	40	n	0.00	0	130	0	130	n	0.00	0	58	0	58	n	0.02	2	113	2	113	y	0.01	1	146	1	146	n	0.02	2	131	2	131	y	0.01	2	162	2	162	y	ENSMUSG00000024055.16	Cyp4f13	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 13
known_NIR_8152	chr17	33220992	33221732	+	33220992;33221606	33221497;33221732	ES	ENSMUST00000141815.3	known	0.67	5	2.5	5	2;3	y	0.92	6	0.5	6	1;0	n	0.71	6	2.5	6	1;4	n	0.75	6	2.0	6	2;2	y	0.57	2	1.5	2	3;0	n	0.67	4	2.0	4	0;4	n	0.76	8	2.5	8	3;2	y	0.59	5	3.5	5	7;0	n	0.89	4	0.5	4	0;1	n	1.00	12	0.0	12	0;0	n	0.57	2	1.5	2	1;2	n	0.87	10	1.5	10	2;1	n	ENSMUSG00000053390.17	Zfp952	chr17	protein_coding	zinc finger protein 952
known_NIR_8153	chr17	33750771	33756066	+	33750771	33756061	A3SS	ENSMUST00000173931.8	known	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.25	1	3	1	3	n	0.33	1	2	1	2	n	0.27	3	8	3	8	y	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.75	3	1	3	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000024299.18	Adamts10	chr17	protein_coding	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10
known_NIR_8154	chr17	33757675	33762172	+	33757669	33762172	A5SS	ENSMUST00000173931.8	known	0.60	3	2	3	2	n	0.50	4	4	4	4	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.12	1	7	1	7	n	0.67	2	1	2	1	n	0.25	2	6	2	6	n	1.00	2	0	2	0	n	0.14	1	6	1	6	n	0.25	1	3	1	3	n	0.50	3	3	3	3	n	0.45	5	6	5	6	y	ENSMUSG00000024299.18	Adamts10	chr17	protein_coding	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10
known_NIR_8155	chr17	33757675	33762172	+	33757686	33762172	A5SS	ENSMUST00000087623.13	known	0.43	3	4	3	4	n	0.57	4	3	4	3	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.20	1	4	1	4	n	1.00	2	0	2	0	n	1.00	2	0	2	0	n	0.50	2	2	2	2	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	3	0	3	0	n	0.50	5	5	5	5	y	ENSMUSG00000024299.18	Adamts10	chr17	protein_coding	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10
known_NIR_8156	chr17	33757686	33762172	+	33757669	33762172	A5SS	ENSMUST00000173931.8	known	0.67	4	2	4	2	n	0.43	3	4	3	4	n	0.33	1	2	1	2	n	0.75	3	1	3	1	n	0.36	4	7	4	7	y	0.00	0	1	0	1	n	0.00	0	6	0	6	n	1.00	2	0	2	0	n	0.14	1	6	1	6	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.45	5	6	5	6	y	ENSMUSG00000024299.18	Adamts10	chr17	protein_coding	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10
known_NIR_8157	chr17	33768359	33768458	+	33768359	33768454	A3SS	ENSMUST00000173931.8	known	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.36	4	7	4	7	y	0.30	3	7	3	7	y	0.33	5	10	5	10	y	0.29	2	5	2	5	n	0.33	2	4	2	4	n	0.25	1	3	1	3	n	0.29	2	5	2	5	n	0.33	3	6	3	6	n	0.25	2	6	2	6	n	0.00	0	6	0	6	n	ENSMUSG00000024299.18	Adamts10	chr17	protein_coding	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10
known_NIR_8158	chr17	33770164	33770226	+	33770164	33770242	A3SS	ENSMUST00000173931.8	known	0.00	0	12	0	12	n	0.10	1	9	1	9	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	15	0	15	n	0.00	0	3	0	3	n	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.18	2	9	2	9	y	0.00	0	4	0	4	n	0.00	0	7	0	7	n	ENSMUSG00000024299.18	Adamts10	chr17	protein_coding	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10
known_NIR_8159	chr17	33848190	33848755	+	33848190	33848596	A3SS&ES	ENSMUST00000166627.8	known	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.25	3	9	3	9	y	0.00	0	5	0	5	n	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.08	1	12	1	12	n	ENSMUSG00000073423.11	Zfp414	chr17	protein_coding	zinc finger protein 414
known_NIR_8160	chr17	33848190	33848755	+	33848190	33848771	A3SS	ENSMUST00000073570.12	known	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.14	3	18	3	18	y	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.06	1	17	1	17	n	ENSMUSG00000073423.11	Zfp414	chr17	protein_coding	zinc finger protein 414
known_NIR_8161	chr17	33848190	33848771	+	33848190;33848672	33848596;33848771	ES	ENSMUST00000166627.8	known	0.72	13	5.0	13	5;5	y	0.50	5	5.0	5	6;4	y	0.33	8	16.0	8	14;18	y	0.56	9	7.0	9	8;6	y	0.50	6	6.0	6	8;4	y	0.22	1	3.5	1	7;0	n	0.71	18	7.5	18	9;6	y	0.45	5	6.0	5	5;7	y	0.18	3	14.0	3	16;12	y	0.63	12	7.0	12	7;7	y	0.54	7	6.0	7	4;8	y	0.67	17	8.5	17	12;5	y	ENSMUSG00000073423.11	Zfp414	chr17	protein_coding	zinc finger protein 414
known_NIR_8162	chr17	33848190	33848771	+	33848672	33848771	5pMXE	ENSMUST00000165504.2	known	0.72	13	5	13	5	y	0.56	5	4	5	4	n	0.31	8	18	8	18	y	0.60	9	6	9	6	y	0.60	6	4	6	4	y	1.00	1	0	1	0	n	0.75	18	6	18	6	y	0.42	5	7	5	7	y	0.20	3	12	3	12	y	0.63	12	7	12	7	y	0.47	7	8	7	8	y	0.77	17	5	17	5	y	ENSMUSG00000073423.11	Zfp414	chr17	protein_coding	zinc finger protein 414
known_NIR_8163	chr17	33848672	33848744	+	33848672	33848771	A3SS	ENSMUST00000166627.8	known	0.38	3	5	3	5	n	0.67	8	4	8	4	y	0.10	2	18	2	18	y	0.33	3	6	3	6	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.14	2	12	2	12	y	0.22	2	7	2	7	n	0.00	0	8	0	8	n	0.44	4	5	4	5	n	ENSMUSG00000073423.11	Zfp414	chr17	protein_coding	zinc finger protein 414
known_NIR_8164	chr17	33865719	33867787	-	33865633	33867787	A3SS	ENSMUST00000148178.8	known	0.12	29	215	29	215	y	0.04	10	215	10	215	y	0.03	11	328	11	328	y	0.07	15	211	15	211	y	0.08	19	224	19	224	y	0.08	11	123	11	123	y	0.07	22	316	22	316	y	0.07	9	125	9	125	y	0.07	16	205	16	205	y	0.06	17	251	17	251	y	0.07	15	194	15	194	y	0.06	13	223	13	223	y	ENSMUSG00000059208.16	Hnrnpm	chr17	protein_coding	heterogeneous nuclear ribonucleoprotein M
known_NIR_8165	chr17	33867838	33868569	-	33867838	33877362	A5SS	ENSMUST00000130946.8	known	1.00	209	0	209	0	n	1.00	204	0	204	0	n	1.00	304	0	304	0	n	0.99	222	2	222	2	y	1.00	206	0	206	0	n	1.00	123	0	123	0	n	1.00	312	0	312	0	n	1.00	154	0	154	0	n	1.00	190	0	190	0	n	1.00	227	0	227	0	n	1.00	204	0	204	0	n	1.00	229	0	229	0	n	ENSMUSG00000059208.16	Hnrnpm	chr17	protein_coding	heterogeneous nuclear ribonucleoprotein M
known_NIR_8166	chr17	33871300	33877362	-	33867838	33877362	A3SS	ENSMUST00000130946.8	known	1.00	204	0	204	0	n	1.00	226	0	226	0	n	1.00	355	0	355	0	n	0.99	216	2	216	2	y	1.00	271	0	271	0	n	1.00	186	0	186	0	n	1.00	231	0	231	0	n	1.00	135	0	135	0	n	1.00	188	0	188	0	n	1.00	248	0	248	0	n	1.00	198	0	198	0	n	1.00	247	0	247	0	n	ENSMUSG00000059208.16	Hnrnpm	chr17	protein_coding	heterogeneous nuclear ribonucleoprotein M
known_NIR_8167	chr17	33884619	33885621	-	33884619	33885468	A5SS	ENSMUST00000148178.8	known	0.02	3	140	3	140	y	0.08	10	112	10	112	y	0.06	17	279	17	279	y	0.02	5	210	5	210	y	0.06	13	221	13	221	y	0.09	10	104	10	104	y	0.09	16	170	16	170	y	0.04	6	150	6	150	y	0.01	2	154	2	154	y	0.04	8	193	8	193	y	0.07	10	127	10	127	y	0.05	8	158	8	158	y	ENSMUSG00000059208.16	Hnrnpm	chr17	protein_coding	heterogeneous nuclear ribonucleoprotein M
known_NIR_8168	chr17	33884619	33885621	-	33884619;33885503	33885468;33885621	ES	ENSMUST00000139302.8	known	0.02	3	120.5	3	140;101	y	0.09	10	102.5	10	112;93	y	0.06	17	262.0	17	279;245	y	0.03	5	185.0	5	210;160	y	0.06	13	201.5	13	221;182	y	0.09	10	101.0	10	104;98	y	0.10	16	147.5	16	170;125	y	0.04	6	133.5	6	150;117	y	0.02	2	130.5	2	154;107	y	0.04	8	187.5	8	193;182	y	0.08	10	122.5	10	127;118	y	0.05	8	137.5	8	158;117	y	ENSMUSG00000059208.16	Hnrnpm	chr17	protein_coding	heterogeneous nuclear ribonucleoprotein M
known_NIR_8169	chr17	33888150	33896248	-	33888150;33889107	33889055;33896248	ES	ENSMUST00000148178.8	known	0.12	19	139.0	19	141;137	y	0.07	9	124.5	9	131;118	y	0.01	3	235.0	3	242;228	y	0.04	7	166.5	7	164;169	y	0.07	14	198.5	14	199;198	y	0.07	8	104.5	8	108;101	y	0.06	10	154.0	10	146;162	y	0.02	2	124.0	2	128;120	y	0.07	8	106.5	8	112;101	y	0.06	11	176.5	11	174;179	y	0.05	7	122.5	7	124;121	y	0.07	14	177.0	14	170;184	y	ENSMUSG00000059208.16	Hnrnpm	chr17	protein_coding	heterogeneous nuclear ribonucleoprotein M
known_NIR_8170	chr17	33911103	33915011	-	33911127	33915011	A3SS	ENSMUST00000066121.13	known	0.00	0	150	0	150	n	0.00	0	191	0	191	n	0.02	4	163	4	163	y	0.00	0	131	0	131	n	0.00	0	193	0	193	n	0.00	0	98	0	98	n	0.00	0	210	0	210	n	0.02	2	92	2	92	y	0.01	2	148	2	148	y	0.01	2	221	2	221	y	0.00	0	178	0	178	n	0.01	2	154	2	154	y	ENSMUSG00000079557.12	Marchf2	chr17	protein_coding	membrane associated ring-CH-type finger 2
known_NIR_8171	chr17	33911103	33915011	-	33911177	33915011	A3SS	ENSMUST00000173015.8	known	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.24	4	13	4	13	y	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.40	2	3	2	3	n	0.20	2	8	2	8	y	0.25	2	6	2	6	n	0.00	0	11	0	11	n	0.18	2	9	2	9	y	ENSMUSG00000079557.12	Marchf2	chr17	protein_coding	membrane associated ring-CH-type finger 2
known_NIR_8172	chr17	33911177	33915011	-	33911127	33915011	A3SS	ENSMUST00000066121.13	known	0.07	12	150	12	150	y	0.05	10	191	10	191	y	0.07	13	163	13	163	y	0.05	7	131	7	131	y	0.02	4	193	4	193	y	0.11	12	98	12	98	y	0.05	12	210	12	210	y	0.03	3	92	3	92	y	0.05	8	148	8	148	y	0.03	6	221	6	221	y	0.06	11	178	11	178	y	0.06	9	154	9	154	y	ENSMUSG00000079557.12	Marchf2	chr17	protein_coding	membrane associated ring-CH-type finger 2
known_NIR_8173	chr17	33928946;33935036	33934917;33937520	-	33928946	33937520	cassetteExon	ENSMUST00000172934.8	known	0.24	22.5	71	22;23	71	y	0.30	34.0	81	33;35	81	y	0.18	16.5	75	24;9	75	y	0.20	19.0	77	21;17	77	y	0.28	47.5	121	45;50	121	y	0.25	18.5	55	21;16	55	y	0.24	29.5	92	34;25	92	y	0.30	22.5	53	25;20	53	y	0.25	21.5	63	26;17	63	y	0.22	38.0	132	40;36	132	y	0.24	24.0	78	26;22	78	y	0.22	26.5	96	34;19	96	y	ENSMUSG00000079557.12	Marchf2	chr17	protein_coding	membrane associated ring-CH-type finger 2
known_NIR_8174	chr17	33966495	33967484	-	33966787	33967484	A3SS	ENSMUST00000235046.2	known	0.00	0	183	0	183	n	0.00	0	222	0	222	n	0.04	12	259	12	259	y	0.00	0	214	0	214	n	0.03	9	267	9	267	y	0.00	0	163	0	163	n	0.03	9	328	9	328	y	0.00	0	166	0	166	n	0.00	0	167	0	167	n	0.03	9	282	9	282	y	0.00	0	195	0	195	n	0.00	0	266	0	266	n	ENSMUSG00000077450.14	Rab11b	chr17	protein_coding	RAB11B, member RAS oncogene family
known_NIR_8175	chr17	33967559	33967841	-	33967564	33967841	A3SS	ENSMUST00000235046.2	known	0.00	0	142	0	142	n	0.00	0	135	0	135	n	0.00	0	229	0	229	n	0.03	6	207	6	207	y	0.00	0	251	0	251	n	0.00	0	127	0	127	n	0.00	0	280	0	280	n	0.00	0	145	0	145	n	0.00	0	152	0	152	n	0.01	2	271	2	271	y	0.00	0	205	0	205	n	0.00	0	256	0	256	n	ENSMUSG00000077450.14	Rab11b	chr17	protein_coding	RAB11B, member RAS oncogene family
known_NIR_8176	chr17	33968876	33979197	-	33968951	33979197	A3SS	ENSMUST00000057373.14	known	0.01	2	161	2	161	y	0.02	3	125	3	125	y	0.02	4	196	4	196	y	0.05	11	190	11	190	y	0.02	6	270	6	270	y	0.00	0	125	0	125	n	0.01	4	267	4	267	y	0.05	7	132	7	132	y	0.01	2	153	2	153	y	0.02	5	222	5	222	y	0.03	5	171	5	171	y	0.04	9	218	9	218	y	ENSMUSG00000077450.14	Rab11b	chr17	protein_coding	RAB11B, member RAS oncogene family
known_NIR_8177	chr17	33968893	33979197	-	33968951	33979197	A3SS	ENSMUST00000057373.14	known	0.00	0	161	0	161	n	0.01	1	125	1	125	n	0.00	0	196	0	196	n	0.00	0	190	0	190	n	0.00	0	270	0	270	n	0.00	0	125	0	125	n	0.01	3	267	3	267	y	0.00	0	132	0	132	n	0.00	0	153	0	153	n	0.00	0	222	0	222	n	0.00	0	171	0	171	n	0.00	0	218	0	218	n	ENSMUSG00000077450.14	Rab11b	chr17	protein_coding	RAB11B, member RAS oncogene family
known_NIR_8178	chr17	33968951	33979197	-	33968951	33979017	5pMXE	ENSMUST00000235046.2	known	0.97	161	5	161	5	y	0.99	125	1	125	1	n	0.95	196	11	196	11	y	0.94	190	12	190	12	y	0.99	270	2	270	2	y	0.97	125	4	125	4	y	0.99	267	2	267	2	y	0.96	132	5	132	5	y	0.99	153	2	153	2	y	0.98	222	4	222	4	y	0.97	171	5	171	5	y	0.99	218	3	218	3	y	ENSMUSG00000077450.14	Rab11b	chr17	protein_coding	RAB11B, member RAS oncogene family
known_NIR_8179	chr17	33999617	33999757	-	33999621	33999757	A3SS	ENSMUST00000002360.17	known	0.03	6	201	6	201	y	0.06	15	236	15	236	y	0.02	7	327	7	327	y	0.04	10	269	10	269	y	0.05	20	379	20	379	y	0.03	13	388	13	388	y	0.04	21	538	21	538	y	0.02	8	337	8	337	y	0.08	9	100	9	100	y	0.06	21	317	21	317	y	0.05	10	200	10	200	y	0.10	20	185	20	185	y	ENSMUSG00000002289.17	Angptl4	chr17	protein_coding	angiopoietin-like 4
known_NIR_8180	chr17	34042067	34042167	-	34042090	34042167	A3SS	ENSMUST00000173480.8	known	0.00	0	912	0	912	n	0.00	0	891	0	891	n	0.00	0	1140	0	1140	n	0.00	0	606	0	606	n	0.00	0	1103	0	1103	n	0.00	0	774	0	774	n	0.00	0	1178	0	1178	n	0.00	0	692	0	692	n	0.00	0	656	0	656	n	0.00	2	955	2	955	y	0.00	1	851	1	851	n	0.00	0	902	0	902	n	ENSMUSG00000067288.14	Rps28	chr17	protein_coding	ribosomal protein S28
known_NIR_8181	chr17	34042090	34042167	-	34042090	34042171	A5SS	ENSMUST00000087342.13	known	0.71	912	368	912	368	y	0.71	891	372	891	372	y	0.73	1140	427	1140	427	y	0.70	606	263	606	263	y	0.72	1103	430	1103	430	y	0.75	774	253	774	253	y	0.74	1178	424	1178	424	y	0.73	692	255	692	255	y	0.72	656	255	656	255	y	0.72	955	374	955	374	y	0.71	851	348	851	348	y	0.73	902	341	902	341	y	ENSMUSG00000067288.14	Rps28	chr17	protein_coding	ribosomal protein S28
known_NIR_8182	chr17	34043654	34048641	+	34043654	34044575	3pMXE	ENSMUST00000173182.2	known	0.04	27	676	27	676	y	0.04	31	685	31	685	y	0.01	7	530	7	530	y	0.04	22	601	22	601	y	0.03	30	867	30	867	y	0.02	12	502	12	502	y	0.03	27	915	27	915	y	0.03	14	428	14	428	y	0.03	21	661	21	661	y	0.04	33	806	33	806	y	0.03	27	753	27	753	y	0.05	37	754	37	754	y	ENSMUSG00000041881.14	Ndufa7	chr17	protein_coding	NADH:ubiquinone oxidoreductase subunit A7
known_NIR_8183	chr17	34043654	34048641	+	34043654;34044624	34044575;34048641	ES	ENSMUST00000048249.8	known	0.04	27	633.5	27	676;591	y	0.05	31	651.0	31	685;617	y	0.01	7	482.5	7	530;435	y	0.04	22	545.5	22	601;490	y	0.04	30	766.5	30	867;666	y	0.03	12	413.5	12	502;325	y	0.03	27	811.5	27	915;708	y	0.04	14	376.0	14	428;324	y	0.03	21	604.0	21	661;547	y	0.04	33	775.5	33	806;745	y	0.04	27	707.0	27	753;661	y	0.05	37	674.5	37	754;595	y	ENSMUSG00000041881.14	Ndufa7	chr17	protein_coding	NADH:ubiquinone oxidoreductase subunit A7
known_NIR_8184	chr17	34043654	34048641	+	34044724	34048641	5pMXE	ENSMUST00000173175.8	known	1.00	27	0	27	0	n	1.00	31	0	31	0	n	1.00	7	0	7	0	n	1.00	22	0	22	0	n	1.00	30	0	30	0	n	1.00	12	0	12	0	n	1.00	27	0	27	0	n	0.58	14	10	14	10	y	0.78	21	6	21	6	y	0.87	33	5	33	5	y	1.00	27	0	27	0	n	1.00	37	0	37	0	n	ENSMUSG00000041881.14	Ndufa7	chr17	protein_coding	NADH:ubiquinone oxidoreductase subunit A7
known_NIR_8185	chr17	34043654;34044724	34044575;34048641	+	34043654	34048641	cassetteExon	ENSMUST00000173132.8	known	0.93	338.0	27	676;0	27	n	0.92	342.5	31	685;0	31	n	0.97	265.0	7	530;0	7	n	0.93	300.5	22	601;0	22	n	0.94	433.5	30	867;0	30	n	0.95	251.0	12	502;0	12	n	0.94	457.5	27	915;0	27	n	0.94	219.0	14	428;10	14	y	0.94	333.5	21	661;6	21	y	0.92	405.5	33	806;5	33	y	0.93	376.5	27	753;0	27	n	0.91	377.0	37	754;0	37	n	ENSMUSG00000041881.14	Ndufa7	chr17	protein_coding	NADH:ubiquinone oxidoreductase subunit A7
known_NIR_8186	chr17	34043791	34044575	+	34043654	34044575	A5SS	ENSMUST00000048249.8	known	0.00	2	676	2	676	y	0.01	5	685	5	685	y	0.01	3	530	3	530	y	0.00	2	601	2	601	y	0.01	6	867	6	867	y	0.00	1	502	1	502	n	0.01	5	915	5	915	y	0.01	3	428	3	428	y	0.00	0	661	0	661	n	0.00	4	806	4	806	y	0.00	1	753	1	753	n	0.00	1	754	1	754	n	ENSMUSG00000041881.14	Ndufa7	chr17	protein_coding	NADH:ubiquinone oxidoreductase subunit A7
known_NIR_8187	chr17	34044105	34044575	+	34043654	34044575	A5SS	ENSMUST00000048249.8	known	0.00	0	676	0	676	n	0.00	0	685	0	685	n	0.00	0	530	0	530	n	0.00	0	601	0	601	n	0.00	0	867	0	867	n	0.00	0	502	0	502	n	0.00	0	915	0	915	n	0.00	0	428	0	428	n	0.00	0	661	0	661	n	0.00	0	806	0	806	n	0.00	2	753	2	753	y	0.00	0	754	0	754	n	ENSMUSG00000041881.14	Ndufa7	chr17	protein_coding	NADH:ubiquinone oxidoreductase subunit A7
known_NIR_8188	chr17	34044624;34046882	34046776;34048641	+	34044624	34048641	cassetteExon	ENSMUST00000048249.8	known	0.00	2.5	591	2;3	591	y	0.01	5.5	617	8;3	617	y	0.01	3.0	435	4;2	435	y	0.00	2.0	490	4;0	490	n	0.00	2.5	666	4;1	666	n	0.00	0.0	325	0;0	325	n	0.01	5.0	708	8;2	708	y	0.01	2.0	324	1;3	324	n	0.01	5.5	547	6;5	547	y	0.00	3.0	745	3;3	745	y	0.00	3.0	661	2;4	661	y	0.01	3.5	595	3;4	595	y	ENSMUSG00000041881.14	Ndufa7	chr17	protein_coding	NADH:ubiquinone oxidoreductase subunit A7
known_NIR_8189	chr17	34044724	34048641	+	34044624	34048641	A5SS	ENSMUST00000048249.8	known	0.00	0	591	0	591	n	0.00	0	617	0	617	n	0.00	0	435	0	435	n	0.00	0	490	0	490	n	0.00	0	666	0	666	n	0.00	0	325	0	325	n	0.00	0	708	0	708	n	0.03	10	324	10	324	y	0.01	6	547	6	547	y	0.01	5	745	5	745	y	0.00	0	661	0	661	n	0.00	0	595	0	595	n	ENSMUSG00000041881.14	Ndufa7	chr17	protein_coding	NADH:ubiquinone oxidoreductase subunit A7
known_NIR_8190	chr17	34044724	34048641	+	34046882	34048641	A5SS&ES	ENSMUST00000234470.2	known	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.77	10	3	10	3	y	0.55	6	5	6	5	y	0.62	5	3	5	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	ENSMUSG00000041881.14	Ndufa7	chr17	protein_coding	NADH:ubiquinone oxidoreductase subunit A7
known_NIR_8191	chr17	34046882	34048641	+	34043654	34048641	A5SS	ENSMUST00000173132.8	known	0.10	3	27	3	27	y	0.09	3	31	3	31	y	0.22	2	7	2	7	n	0.00	0	22	0	22	n	0.03	1	30	1	30	n	0.00	0	12	0	12	n	0.07	2	27	2	27	y	0.18	3	14	3	14	y	0.19	5	21	5	21	y	0.08	3	33	3	33	y	0.13	4	27	4	27	y	0.10	4	37	4	37	y	ENSMUSG00000041881.14	Ndufa7	chr17	protein_coding	NADH:ubiquinone oxidoreductase subunit A7
known_NIR_8192	chr17	34048285	34048641	+	34043654	34048641	A5SS	ENSMUST00000173132.8	known	0.00	0	27	0	27	n	0.03	1	31	1	31	n	0.12	1	7	1	7	n	0.08	2	22	2	22	y	0.09	3	30	3	30	y	0.08	1	12	1	12	n	0.00	0	27	0	27	n	0.00	0	14	0	14	n	0.00	0	21	0	21	n	0.03	1	33	1	33	n	0.00	0	27	0	27	n	0.00	0	37	0	37	n	ENSMUSG00000041881.14	Ndufa7	chr17	protein_coding	NADH:ubiquinone oxidoreductase subunit A7
known_NIR_8193	chr17	34048285	34048641	+	34044624	34048641	A5SS	ENSMUST00000048249.8	known	0.00	0	591	0	591	n	0.00	1	617	1	617	n	0.00	1	435	1	435	n	0.00	2	490	2	490	y	0.00	3	666	3	666	y	0.00	1	325	1	325	n	0.00	0	708	0	708	n	0.00	0	324	0	324	n	0.00	0	547	0	547	n	0.00	1	745	1	745	n	0.00	0	661	0	661	n	0.00	0	595	0	595	n	ENSMUSG00000041881.14	Ndufa7	chr17	protein_coding	NADH:ubiquinone oxidoreductase subunit A7
known_NIR_8194	chr17	34062605	34064990	+	34062265	34064990	A5SS	ENSMUST00000002379.15	known	0.13	3	20	3	20	y	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.31	4	9	4	9	y	0.25	7	21	7	21	y	0.00	0	12	0	12	n	0.17	5	24	5	24	y	0.06	1	17	1	17	n	0.00	0	17	0	17	n	0.06	1	16	1	16	n	0.15	3	17	3	17	y	0.16	3	16	3	16	y	ENSMUSG00000002308.17	Cd320	chr17	protein_coding	CD320 antigen
known_NIR_8195	chr17	34127560	34128155	-	34127560	34127718	5pMXE	ENSMUST00000172526.3	known	0.62	10	6	10	6	y	0.18	2	9	2	9	y	0.30	3	7	3	7	y	0.11	1	8	1	8	n	0.20	2	8	2	8	y	0.25	1	3	1	3	n	0.20	2	8	2	8	y	0.33	2	4	2	4	n	0.25	2	6	2	6	n	0.26	5	14	5	14	y	0.42	8	11	8	11	y	0.62	5	3	5	3	n	ENSMUSG00000092564.3	BC051226	chr17	lncRNA	cDNA sequence BC051226
known_NIR_8196	chr17	34128572	34129405	+	34128437	34129405	A5SS	ENSMUST00000173028.8	known	1.00	17	0	17	0	n	0.91	21	2	21	2	y	1.00	29	0	29	0	n	0.87	13	2	13	2	y	1.00	27	0	27	0	n	1.00	11	0	11	0	n	1.00	24	0	24	0	n	1.00	17	0	17	0	n	0.90	9	1	9	1	n	1.00	17	0	17	0	n	1.00	19	0	19	0	n	1.00	34	0	34	0	n	ENSMUSG00000002307.17	Daxx	chr17	protein_coding	Fas death domain-associated protein
known_NIR_8197	chr17	34128670	34129405	+	34128572	34129405	A5SS	ENSMUST00000079421.15	known	0.06	1	17	1	17	n	0.00	0	21	0	21	n	0.06	2	29	2	29	y	0.13	2	13	2	13	y	0.04	1	27	1	27	n	0.00	0	11	0	11	n	0.00	0	24	0	24	n	0.00	0	17	0	17	n	0.18	2	9	2	9	y	0.00	0	17	0	17	n	0.00	0	19	0	19	n	0.03	1	34	1	34	n	ENSMUSG00000002307.17	Daxx	chr17	protein_coding	Fas death domain-associated protein
known_NIR_8198	chr17	34132700	34132780	+	34132700	34132817	A3SS	ENSMUST00000079421.15	known	0.03	1	30	1	30	n	0.00	0	30	0	30	n	0.04	2	47	2	47	y	0.00	0	24	0	24	n	0.00	0	34	0	34	n	0.00	0	24	0	24	n	0.03	1	39	1	39	n	0.08	3	34	3	34	y	0.10	3	27	3	27	y	0.09	3	31	3	31	y	0.02	1	42	1	42	n	0.00	0	43	0	43	n	ENSMUSG00000002307.17	Daxx	chr17	protein_coding	Fas death domain-associated protein
known_NIR_8199	chr17	34132700	34132928	+	34132700	34132817	A3SS	ENSMUST00000079421.15	known	0.17	6	30	6	30	y	0.06	2	30	2	30	y	0.00	0	47	0	47	n	0.00	0	24	0	24	n	0.06	2	34	2	34	y	0.04	1	24	1	24	n	0.00	0	39	0	39	n	0.03	1	34	1	34	n	0.00	0	27	0	27	n	0.00	0	31	0	31	n	0.02	1	42	1	42	n	0.02	1	43	1	43	n	ENSMUSG00000002307.17	Daxx	chr17	protein_coding	Fas death domain-associated protein
known_NIR_8200	chr17	34145491	34145604	+	34145491	34145601	A3SS	ENSMUST00000025161.10	known	0.56	120	93	120	93	y	0.56	132	102	132	102	y	0.52	149	135	149	135	y	0.60	142	93	142	93	y	0.55	164	133	164	133	y	0.59	110	75	110	75	y	0.63	187	109	187	109	y	0.53	94	83	94	83	y	0.64	99	55	99	55	y	0.59	156	107	156	107	y	0.57	126	94	126	94	y	0.59	145	100	145	100	y	ENSMUSG00000024308.16	Tapbp	chr17	protein_coding	TAP binding protein
known_NIR_8201	chr17	34150044	34150700	+	34149415	34150700	A5SS	ENSMUST00000047503.16	known	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.28	5	13	5	13	y	0.29	2	5	2	5	n	0.00	0	19	0	19	n	0.20	2	8	2	8	y	0.25	2	6	2	6	n	0.29	2	5	2	5	n	0.22	2	7	2	7	n	0.17	3	15	3	15	y	0.00	0	7	0	7	n	0.25	2	6	2	6	n	ENSMUSG00000041354.17	Rgl2	chr17	protein_coding	ral guanine nucleotide dissociation stimulator-like 2
known_NIR_8202	chr17	34150608	34150700	+	34149415	34150700	A5SS	ENSMUST00000047503.16	known	0.14	1	6	1	6	n	0.10	1	9	1	9	n	0.13	2	13	2	13	y	0.17	1	5	1	5	n	0.05	1	19	1	19	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.25	2	6	2	6	n	ENSMUSG00000041354.17	Rgl2	chr17	protein_coding	ral guanine nucleotide dissociation stimulator-like 2
known_NIR_8203	chr17	34153981	34154144	+	34153981	34154108	A3SS	ENSMUST00000047503.16	known	0.00	0	34	0	34	n	0.00	0	19	0	19	n	0.00	0	18	0	18	n	0.00	0	21	0	21	n	0.14	3	18	3	18	y	0.00	0	10	0	10	n	0.06	1	16	1	16	n	0.00	0	16	0	16	n	0.00	0	10	0	10	n	0.00	0	19	0	19	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	ENSMUSG00000041354.17	Rgl2	chr17	protein_coding	ral guanine nucleotide dissociation stimulator-like 2
known_NIR_8204	chr17	34159079	34159271	-	34159139	34159271	A3SS	ENSMUST00000174048.8	known	1.00	6	0	6	0	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.50	6	6	6	6	y	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	ENSMUSG00000024309.16	Pfdn6	chr17	protein_coding	prefoldin subunit 6
known_NIR_8205	chr17	34171267	34171377	-	34171286	34171377	A3SS	ENSMUST00000174758.8	known	0.00	6	3485	6	3485	y	0.00	11	3987	11	3987	y	0.00	5	4191	5	4191	y	0.00	3	2838	3	2838	y	0.00	7	4587	7	4587	y	0.00	7	2345	7	2345	y	0.00	15	4559	15	4559	y	0.00	3	2160	3	2160	y	0.00	5	2986	5	2986	y	0.00	11	4229	11	4229	y	0.00	9	3913	9	3913	y	0.00	7	3830	7	3830	y	ENSMUSG00000008668.16	Rps18	chr17	protein_coding	ribosomal protein S18
known_NIR_8206	chr17	34171565	34174052	-	34171565	34172714	5pMXE	ENSMUST00000172799.8	known	1.00	2842	0	2842	0	n	1.00	2708	3	2708	3	y	1.00	3331	4	3331	4	y	1.00	2487	5	2487	5	y	1.00	3655	3	3655	3	y	1.00	1990	0	1990	0	n	1.00	3304	3	3304	3	y	1.00	1819	3	1819	3	y	1.00	2287	0	2287	0	n	1.00	3133	0	3133	0	n	1.00	2710	0	2710	0	n	1.00	3001	0	3001	0	n	ENSMUSG00000008668.16	Rps18	chr17	protein_coding	ribosomal protein S18
known_NIR_8207	chr17	34171565;34172882	34172714;34174052	-	34171565	34174052	cassetteExon	ENSMUST00000174745.8	known	0.00	0.0	2842	0;0	2842	n	0.00	2.5	2708	3;2	2708	y	0.00	2.0	3331	4;0	3331	n	0.00	2.5	2487	5;0	2487	n	0.00	2.0	3655	3;1	3655	n	0.00	0.0	1990	0;0	1990	n	0.00	2.5	3304	3;2	3304	y	0.00	1.5	1819	3;0	1819	n	0.00	0.0	2287	0;0	2287	n	0.00	0.5	3133	0;1	3133	n	0.00	0.0	2710	0;0	2710	n	0.00	0.0	3001	0;0	3001	n	ENSMUSG00000008668.16	Rps18	chr17	protein_coding	ribosomal protein S18
known_NIR_8208	chr17	34215477	34215590	-	34215450	34215590	A3SS	ENSMUST00000172912.8	known	0.93	3466	278	3466	278	y	0.93	3620	271	3620	271	y	0.92	3282	270	3282	270	y	0.93	3053	218	3053	218	y	0.92	3482	283	3482	283	y	0.92	1796	146	1796	146	y	0.92	3960	355	3960	355	y	0.92	1703	156	1703	156	y	0.93	3069	225	3069	225	y	0.93	4495	348	4495	348	y	0.92	3656	331	3656	331	y	0.94	3729	237	3729	237	y	ENSMUSG00000061232.17	H2-K1	chr17	protein_coding	histocompatibility 2, K1, K region
known_NIR_8209	chr17	34215477	34215801	-	34215477	34215590	5pMXE	ENSMUST00000238021.2	known	0.00	3	3466	3	3466	y	0.00	11	3620	11	3620	y	0.00	8	3282	8	3282	y	0.00	3	3053	3	3053	y	0.00	6	3482	6	3482	y	0.00	2	1796	2	1796	y	0.00	5	3960	5	3960	y	0.00	8	1703	8	1703	y	0.00	4	3069	4	3069	y	0.00	13	4495	13	4495	y	0.00	10	3656	10	3656	y	0.00	2	3729	2	3729	y	ENSMUSG00000061232.17	H2-K1	chr17	protein_coding	histocompatibility 2, K1, K region
known_NIR_8210	chr17	34215477	34215801	-	34215628	34215801	A3SS&ES	ENSMUST00000172912.8	known	0.00	3	3118	3	3118	y	0.00	11	3249	11	3249	y	0.00	8	2913	8	2913	y	0.00	3	2676	3	2676	y	0.00	6	3304	6	3304	y	0.00	2	1604	2	1604	y	0.00	5	3670	5	3670	y	0.00	8	1652	8	1652	y	0.00	4	2762	4	2762	y	0.00	13	4120	13	4120	y	0.00	10	3444	10	3444	y	0.00	2	3356	2	3356	y	ENSMUSG00000061232.17	H2-K1	chr17	protein_coding	histocompatibility 2, K1, K region
known_NIR_8211	chr17	34215477;34215628	34215590;34215801	-	34215477	34215801	cassetteExon	ENSMUST00000236740.2	known	1.00	3292.0	3	3466;3118	3	y	1.00	3434.5	11	3620;3249	11	y	1.00	3097.5	8	3282;2913	8	y	1.00	2864.5	3	3053;2676	3	y	1.00	3393.0	6	3482;3304	6	y	1.00	1700.0	2	1796;1604	2	y	1.00	3815.0	5	3960;3670	5	y	1.00	1677.5	8	1703;1652	8	y	1.00	2915.5	4	3069;2762	4	y	1.00	4307.5	13	4495;4120	13	y	1.00	3550.0	10	3656;3444	10	y	1.00	3542.5	2	3729;3356	2	y	ENSMUSG00000061232.17	H2-K1	chr17	protein_coding	histocompatibility 2, K1, K region
known_NIR_8212	chr17	34215477;34215628	34215590;34216012	-	34215477;34215833	34215801;34216012	MXE	ENSMUST00000236740.2	known	0.57	1746.5	1337.5	3466;27	3;2672	y	0.56	1822.0	1412.5	3620;24	11;2814	y	0.57	1657.5	1257.0	3282;33	8;2506	y	0.56	1531.5	1193.0	3053;10	3;2383	y	0.54	1755.0	1499.0	3482;28	6;2992	y	0.57	903.5	693.0	1796;11	2;1384	y	0.56	1993.0	1538.5	3960;26	5;3072	y	0.55	856.5	707.0	1703;10	8;1406	y	0.57	1541.5	1178.5	3069;14	4;2353	y	0.56	2258.0	1775.0	4495;21	13;3537	y	0.56	1836.5	1439.5	3656;17	10;2869	y	0.56	1871.0	1441.5	3729;13	2;2881	y	ENSMUSG00000061232.17	H2-K1	chr17	protein_coding	histocompatibility 2, K1, K region
known_NIR_8213	chr17	34215477;34215848	34215801;34216012	-	34215477;34215628	34215590;34216012	MXE	ENSMUST00000236469.2	known	0.01	21.5	1746.5	3;40	3466;27	y	0.01	25.0	1822.0	11;39	3620;24	y	0.01	25.0	1657.5	8;42	3282;33	y	0.01	16.5	1531.5	3;30	3053;10	y	0.01	20.5	1755.0	6;35	3482;28	y	0.01	11.0	903.5	2;20	1796;11	y	0.01	27.0	1993.0	5;49	3960;26	y	0.02	16.0	856.5	8;24	1703;10	y	0.01	14.5	1541.5	4;25	3069;14	y	0.01	26.0	2258.0	13;39	4495;21	y	0.01	19.0	1836.5	10;28	3656;17	y	0.01	21.0	1871.0	2;40	3729;13	y	ENSMUSG00000061232.17	H2-K1	chr17	protein_coding	histocompatibility 2, K1, K region
known_NIR_8214	chr17	34215628	34216012	-	34215628	34215801	A5SS	ENSMUST00000173543.2	known	0.01	27	3118	27	3118	y	0.01	24	3249	24	3249	y	0.01	33	2913	33	2913	y	0.00	10	2676	10	2676	y	0.01	28	3304	28	3304	y	0.01	11	1604	11	1604	y	0.01	26	3670	26	3670	y	0.01	10	1652	10	1652	y	0.01	14	2762	14	2762	y	0.01	21	4120	21	4120	y	0.00	17	3444	17	3444	y	0.00	13	3356	13	3356	y	ENSMUSG00000061232.17	H2-K1	chr17	protein_coding	histocompatibility 2, K1, K region
known_NIR_8215	chr17	34215628	34216012	-	34215628;34215833	34215801;34216012	ES	ENSMUST00000172912.8	known	0.01	27	2895.0	27	3118;2672	y	0.01	24	3031.5	24	3249;2814	y	0.01	33	2709.5	33	2913;2506	y	0.00	10	2529.5	10	2676;2383	y	0.01	28	3148.0	28	3304;2992	y	0.01	11	1494.0	11	1604;1384	y	0.01	26	3371.0	26	3670;3072	y	0.01	10	1529.0	10	1652;1406	y	0.01	14	2557.5	14	2762;2353	y	0.01	21	3828.5	21	4120;3537	y	0.01	17	3156.5	17	3444;2869	y	0.00	13	3118.5	13	3356;2881	y	ENSMUSG00000061232.17	H2-K1	chr17	protein_coding	histocompatibility 2, K1, K region
known_NIR_8216	chr17	34215628	34216012	-	34215833	34216012	A3SS	ENSMUST00000114311.11	known	0.01	27	2672	27	2672	y	0.01	24	2814	24	2814	y	0.01	33	2506	33	2506	y	0.00	10	2383	10	2383	y	0.01	28	2992	28	2992	y	0.01	11	1384	11	1384	y	0.01	26	3072	26	3072	y	0.01	10	1406	10	1406	y	0.01	14	2353	14	2353	y	0.01	21	3537	21	3537	y	0.01	17	2869	17	2869	y	0.00	13	2881	13	2881	y	ENSMUSG00000061232.17	H2-K1	chr17	protein_coding	histocompatibility 2, K1, K region
known_NIR_8217	chr17	34215628;34215848	34215801;34216012	-	34215628	34216012	cassetteExon	ENSMUST00000236469.2	known	0.98	1579.0	27	3118;40	27	y	0.99	1644.0	24	3249;39	24	y	0.98	1477.5	33	2913;42	33	y	0.99	1353.0	10	2676;30	10	y	0.98	1669.5	28	3304;35	28	y	0.99	812.0	11	1604;20	11	y	0.99	1859.5	26	3670;49	26	y	0.99	838.0	10	1652;24	10	y	0.99	1393.5	14	2762;25	14	y	0.99	2079.5	21	4120;39	21	y	0.99	1736.0	17	3444;28	17	y	0.99	1698.0	13	3356;40	13	y	ENSMUSG00000061232.17	H2-K1	chr17	protein_coding	histocompatibility 2, K1, K region
known_NIR_8218	chr17	34215848	34216012	-	34215833	34216012	A3SS	ENSMUST00000172912.8	known	0.01	40	2672	40	2672	y	0.01	39	2814	39	2814	y	0.02	42	2506	42	2506	y	0.01	30	2383	30	2383	y	0.01	35	2992	35	2992	y	0.01	20	1384	20	1384	y	0.02	49	3072	49	3072	y	0.02	24	1406	24	1406	y	0.01	25	2353	25	2353	y	0.01	39	3537	39	3537	y	0.01	28	2869	28	2869	y	0.01	40	2881	40	2881	y	ENSMUSG00000061232.17	H2-K1	chr17	protein_coding	histocompatibility 2, K1, K region
known_NIR_8219	chr17	34216534	34218021	-	34216534	34218245	A5SS	ENSMUST00000172912.8	known	0.00	0	3589	0	3589	n	0.00	3	3140	3	3140	y	0.00	0	3536	0	3536	n	0.00	0	3387	0	3387	n	0.00	4	3847	4	3847	y	0.00	3	1844	3	1844	y	0.00	4	3722	4	3722	y	0.00	1	1897	1	1897	n	0.00	6	2943	6	2943	y	0.00	1	4488	1	4488	n	0.00	0	3439	0	3439	n	0.00	0	3605	0	3605	n	ENSMUSG00000061232.17	H2-K1	chr17	protein_coding	histocompatibility 2, K1, K region
known_NIR_8220	chr17	34218484	34218708	-	34218520	34218708	A3SS	ENSMUST00000172912.8	known	0.04	133	3015	133	3015	y	0.05	125	2376	125	2376	y	0.06	173	2946	173	2946	y	0.04	140	2974	140	2974	y	0.05	162	3173	162	3173	y	0.05	84	1689	84	1689	y	0.05	162	2853	162	2853	y	0.06	105	1576	105	1576	y	0.05	123	2430	123	2430	y	0.06	240	3765	240	3765	y	0.05	149	2696	149	2696	y	0.05	160	3064	160	3064	y	ENSMUSG00000061232.17	H2-K1	chr17	protein_coding	histocompatibility 2, K1, K region
known_NIR_8221	chr17	34219037	34219168	-	34218977	34219168	A3SS	ENSMUST00000172912.8	known	0.01	30	2456	30	2456	y	0.02	33	1798	33	1798	y	0.02	52	2482	52	2482	y	0.01	37	2710	37	2710	y	0.01	29	2604	29	2604	y	0.02	24	1230	24	1230	y	0.02	44	2396	44	2396	y	0.02	32	1294	32	1294	y	0.02	29	1883	29	1883	y	0.01	43	2925	43	2925	y	0.02	48	2135	48	2135	y	0.01	37	2432	37	2432	y	ENSMUSG00000061232.17	H2-K1	chr17	protein_coding	histocompatibility 2, K1, K region
known_NIR_8222	chr17	34246814	34246955	-	34246814	34246976	A5SS	ENSMUST00000237759.2	known	0.10	11	95	11	95	y	0.05	6	106	6	106	y	0.15	15	85	15	85	y	0.09	12	126	12	126	y	0.12	19	137	19	137	y	0.10	7	62	7	62	y	0.06	6	89	6	89	y	0.26	15	43	15	43	y	0.09	9	95	9	95	y	0.11	21	168	21	168	y	0.16	26	137	26	137	y	0.12	19	144	19	144	y	ENSMUSG00000073422.12	H2-Ke6	chr17	protein_coding	H2-K region expressed gene 6
known_NIR_8223	chr17	34246814	34247827	-	34246814	34246955	5pMXE	ENSMUST00000114303.4	known	0.00	0	11	0	11	n	0.60	9	6	9	6	y	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.00	0	19	0	19	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.00	0	21	0	21	n	0.00	0	26	0	26	n	0.00	0	19	0	19	n	ENSMUSG00000073422.12	H2-Ke6	chr17	protein_coding	H2-K region expressed gene 6
known_NIR_8224	chr17	34246814	34247827	-	34246814	34246976	5pMXE	ENSMUST00000237759.2	known	0.00	0	95	0	95	n	0.08	9	106	9	106	y	0.00	0	85	0	85	n	0.00	0	126	0	126	n	0.00	0	137	0	137	n	0.00	0	62	0	62	n	0.00	0	89	0	89	n	0.00	0	43	0	43	n	0.00	0	95	0	95	n	0.00	0	168	0	168	n	0.00	0	137	0	137	n	0.00	0	144	0	144	n	ENSMUSG00000073422.12	H2-Ke6	chr17	protein_coding	H2-K region expressed gene 6
known_NIR_8225	chr17	34249708	34250522	-	34249708	34249798	A5SS	ENSMUST00000025186.16	known	0.00	0	244	0	244	n	0.00	0	200	0	200	n	0.00	0	516	0	516	n	0.00	0	211	0	211	n	0.00	0	376	0	376	n	0.00	0	320	0	320	n	0.00	1	279	1	279	n	0.00	0	267	0	267	n	0.02	4	177	4	177	y	0.02	5	245	5	245	y	0.00	1	204	1	204	n	0.00	0	187	0	187	n	ENSMUSG00000024327.17	Slc39a7	chr17	protein_coding	solute carrier family 39 (zinc transporter), member 7
known_NIR_8226	chr17	34249708	34250522	-	34249708;34250236	34249798;34250522	ES	ENSMUST00000169397.9	known	0.00	0	140.5	0	244;37	n	0.00	0	111.5	0	200;23	n	0.00	0	280.5	0	516;45	n	0.00	0	123.0	0	211;35	n	0.00	0	208.5	0	376;41	n	0.00	0	168.5	0	320;17	n	0.01	1	157.0	1	279;35	n	0.00	0	145.0	0	267;23	n	0.04	4	98.5	4	177;20	y	0.03	5	138.0	5	245;31	y	0.01	1	118.0	1	204;32	n	0.00	0	106.5	0	187;26	n	ENSMUSG00000024327.17	Slc39a7	chr17	protein_coding	solute carrier family 39 (zinc transporter), member 7
known_NIR_8227	chr17	34249708	34250522	-	34250236	34250522	A3SS	ENSMUST00000168978.3	known	0.00	0	37	0	37	n	0.00	0	23	0	23	n	0.00	0	45	0	45	n	0.00	0	35	0	35	n	0.00	0	41	0	41	n	0.00	0	17	0	17	n	0.03	1	35	1	35	n	0.00	0	23	0	23	n	0.17	4	20	4	20	y	0.14	5	31	5	31	y	0.03	1	32	1	32	n	0.00	0	26	0	26	n	ENSMUSG00000092595.3	Gm20427	chr17	lncRNA	predicted gene 20427
known_NIR_8228	chr17	34251458	34251801	+	34251197	34251801	A5SS	ENSMUST00000044858.16	known	0.47	15	17	15	17	y	0.36	14	25	14	25	y	0.34	15	29	15	29	y	0.49	20	21	20	21	y	0.32	18	38	18	38	y	0.33	10	20	10	20	y	0.50	26	26	26	26	y	0.41	12	17	12	17	y	0.15	6	34	6	34	y	0.25	15	46	15	46	y	0.49	25	26	25	26	y	0.38	16	26	16	26	y	ENSMUSG00000039656.18	Rxrb	chr17	protein_coding	retinoid X receptor beta
known_NIR_8229	chr17	34255731	34255847	+	34255731	34255835	A3SS	ENSMUST00000044858.16	known	0.62	42	26	42	26	y	0.82	61	13	61	13	y	0.69	67	30	67	30	y	0.74	63	22	63	22	y	0.77	74	22	74	22	y	0.71	36	15	36	15	y	0.63	61	36	61	36	y	0.68	39	18	39	18	y	0.68	46	22	46	22	y	0.68	73	35	73	35	y	0.56	45	36	45	36	y	0.76	68	22	68	22	y	ENSMUSG00000039656.18	Rxrb	chr17	protein_coding	retinoid X receptor beta
known_NIR_8230	chr17	34333151	34333864	-	34333151	34333324	5pMXE	ENSMUST00000235347.2	known	0.00	0	181	0	181	n	0.00	0	164	0	164	n	0.01	3	236	3	236	y	0.00	0	167	0	167	n	0.00	0	242	0	242	n	0.00	0	105	0	105	n	0.00	0	215	0	215	n	0.00	0	110	0	110	n	0.00	0	146	0	146	n	0.00	0	258	0	258	n	0.00	0	148	0	148	n	0.00	0	188	0	188	n	ENSMUSG00000024335.21	Brd2	chr17	protein_coding	bromodomain containing 2
known_NIR_8231	chr17	34333151	34333864	-	34333151;34333452	34333324;34333864	ES	ENSMUST00000114242.9	known	0.00	0	159.5	0	181;138	n	0.00	0	135.0	0	164;106	n	0.02	3	195.0	3	236;154	y	0.00	0	154.0	0	167;141	n	0.00	0	225.5	0	242;209	n	0.00	0	106.0	0	105;107	n	0.00	0	189.0	0	215;163	n	0.00	0	110.5	0	110;111	n	0.00	0	127.5	0	146;109	n	0.00	0	226.5	0	258;195	n	0.00	0	135.0	0	148;122	n	0.00	0	177.0	0	188;166	n	ENSMUSG00000024335.21	Brd2	chr17	protein_coding	bromodomain containing 2
known_NIR_8232	chr17	34333151	34333864	-	34333452	34333864	A3SS	ENSMUST00000148143.3	known	0.00	0	138	0	138	n	0.00	0	106	0	106	n	0.02	3	154	3	154	y	0.00	0	141	0	141	n	0.00	0	209	0	209	n	0.00	0	107	0	107	n	0.00	0	163	0	163	n	0.00	0	111	0	111	n	0.00	0	109	0	109	n	0.00	0	195	0	195	n	0.00	0	122	0	122	n	0.00	0	166	0	166	n	ENSMUSG00000024335.21	Brd2	chr17	protein_coding	bromodomain containing 2
known_NIR_8233	chr17	34333151;34333477	34333324;34333864	-	34333151	34333864	cassetteExon	ENSMUST00000173032.2	known	1.00	90.5	0	181;0	0	n	1.00	82.5	0	164;1	0	n	0.98	119.5	3	236;3	3	y	1.00	83.5	0	167;0	0	n	1.00	121.0	0	242;0	0	n	1.00	53.0	0	105;1	0	n	1.00	108.0	0	215;1	0	n	1.00	56.5	0	110;3	0	n	1.00	73.0	0	146;0	0	n	1.00	129.5	0	258;1	0	n	1.00	75.0	0	148;2	0	n	1.00	94.5	0	188;1	0	n	ENSMUSG00000024335.21	Brd2	chr17	protein_coding	bromodomain containing 2
known_NIR_8234	chr17	34333151;34333624	34333324;34333864	-	34333151	34333864	cassetteExon	ENSMUST00000173032.2	known	1.00	91.0	0	181;1	0	n	1.00	83.5	0	164;3	0	n	0.98	122.5	3	236;9	3	y	1.00	85.0	0	167;3	0	n	1.00	122.5	0	242;3	0	n	1.00	53.5	0	105;2	0	n	1.00	109.0	0	215;3	0	n	1.00	55.0	0	110;0	0	n	1.00	74.0	0	146;2	0	n	1.00	130.5	0	258;3	0	n	1.00	74.0	0	148;0	0	n	1.00	95.5	0	188;3	0	n	ENSMUSG00000024335.21	Brd2	chr17	protein_coding	bromodomain containing 2
known_NIR_8235	chr17	34333477	34333864	-	34333452	34333864	A3SS	ENSMUST00000114242.9	known	0.00	0	138	0	138	n	0.01	1	106	1	106	n	0.02	3	154	3	154	y	0.00	0	141	0	141	n	0.00	0	209	0	209	n	0.01	1	107	1	107	n	0.01	1	163	1	163	n	0.03	3	111	3	111	y	0.00	0	109	0	109	n	0.01	1	195	1	195	n	0.02	2	122	2	122	y	0.01	1	166	1	166	n	ENSMUSG00000024335.21	Brd2	chr17	protein_coding	bromodomain containing 2
known_NIR_8236	chr17	34333477	34333864	-	34333624	34333864	A3SS	ENSMUST00000173204.2	known	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.25	3	9	3	9	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.25	1	3	1	3	n	1.00	3	0	3	0	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	1.00	2	0	2	0	n	0.25	1	3	1	3	n	ENSMUSG00000024335.21	Brd2	chr17	protein_coding	bromodomain containing 2
known_NIR_8237	chr17	34333624	34333864	-	34333452	34333864	A3SS	ENSMUST00000114242.9	known	0.01	1	138	1	138	n	0.03	3	106	3	106	y	0.06	9	154	9	154	y	0.02	3	141	3	141	y	0.01	3	209	3	209	y	0.02	2	107	2	107	y	0.02	3	163	3	163	y	0.00	0	111	0	111	n	0.02	2	109	2	109	y	0.02	3	195	3	195	y	0.00	0	122	0	122	n	0.02	3	166	3	166	y	ENSMUSG00000024335.21	Brd2	chr17	protein_coding	bromodomain containing 2
known_NIR_8238	chr17	34335309	34335882	-	34335309	34335572	A5SS	ENSMUST00000237872.2	known	0.78	69	20	69	20	y	0.63	45	26	45	26	y	0.64	89	49	89	49	y	0.70	93	39	93	39	y	0.63	99	58	99	58	y	0.70	49	21	49	21	y	0.69	90	40	90	40	y	0.72	55	21	55	21	y	0.64	47	27	47	27	y	0.74	88	31	88	31	y	0.82	54	12	54	12	y	0.62	71	43	71	43	y	ENSMUSG00000024335.21	Brd2	chr17	protein_coding	bromodomain containing 2
known_NIR_8239	chr17	34335309;34335663	34335572;34335882	-	34335309	34335882	cassetteExon	ENSMUST00000114242.9	known	0.29	28.0	69	20;36	69	y	0.37	26.5	45	26;27	45	y	0.36	50.5	89	49;52	89	y	0.31	41.0	93	39;43	93	y	0.33	49.5	99	58;41	99	y	0.31	22.5	49	21;24	49	y	0.29	37.5	90	40;35	90	y	0.28	21.5	55	21;22	55	y	0.36	26.0	47	27;25	47	y	0.29	36.5	88	31;42	88	y	0.24	17.5	54	12;23	54	y	0.36	39.5	71	43;36	71	y	ENSMUSG00000024335.21	Brd2	chr17	protein_coding	bromodomain containing 2
known_NIR_8240	chr17	34338874	34339169	-	34338874	34341136	A5SS	ENSMUST00000025193.14	known	0.00	0	6	0	6	n	0.29	2	5	2	5	n	0.29	5	12	5	12	y	0.33	4	8	4	8	y	0.33	4	8	4	8	y	0.20	2	8	2	8	y	0.38	5	8	5	8	y	0.25	1	3	1	3	n	0.25	2	6	2	6	n	0.58	7	5	7	5	y	0.25	1	3	1	3	n	0.44	4	5	4	5	n	ENSMUSG00000024335.21	Brd2	chr17	protein_coding	bromodomain containing 2
known_NIR_8241	chr17	34338874	34339817	-	34338874	34339169	5pMXE	ENSMUST00000154232.9	known	1.00	2	0	2	0	n	0.71	5	2	5	2	n	0.38	3	5	3	5	n	0.50	4	4	4	4	n	0.71	10	4	10	4	y	0.71	5	2	5	2	n	0.38	3	5	3	5	n	0.00	0	1	0	1	n	0.50	2	2	2	2	n	0.12	1	7	1	7	n	0.67	2	1	2	1	n	0.56	5	4	5	4	n	ENSMUSG00000024335.21	Brd2	chr17	protein_coding	bromodomain containing 2
known_NIR_8242	chr17	34338874	34339817	-	34338874	34341136	A5SS	ENSMUST00000025193.14	known	0.25	2	6	2	6	n	0.50	5	5	5	5	y	0.20	3	12	3	12	y	0.33	4	8	4	8	y	0.56	10	8	10	8	y	0.38	5	8	5	8	y	0.27	3	8	3	8	y	0.00	0	3	0	3	n	0.25	2	6	2	6	n	0.17	1	5	1	5	n	0.40	2	3	2	3	n	0.50	5	5	5	5	y	ENSMUSG00000024335.21	Brd2	chr17	protein_coding	bromodomain containing 2
known_NIR_8243	chr17	34338874	34340835	-	34338874	34341136	A5SS	ENSMUST00000025193.14	known	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.14	2	12	2	12	y	0.00	0	8	0	8	n	0.11	1	8	1	8	n	0.00	0	8	0	8	n	0.11	1	8	1	8	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000024335.21	Brd2	chr17	protein_coding	bromodomain containing 2
known_NIR_8244	chr17	34401325	34402589	-	34401325	34402063	5pMXE	ENSMUST00000178857.2	known	0.00	0	135	0	135	n	0.02	2	124	2	124	y	0.02	1	51	1	51	n	0.01	1	113	1	113	n	0.00	0	75	0	75	n	0.00	0	48	0	48	n	0.00	0	93	0	93	n	0.00	0	37	0	37	n	0.02	2	89	2	89	y	0.00	0	129	0	129	n	0.00	0	94	0	94	n	0.00	0	83	0	83	n	ENSMUSG00000096727.4	Psmb9	chr17	protein_coding	proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)
known_NIR_8245	chr17	34401325	34402589	-	34401325;34402204	34402063;34402589	ES	ENSMUST00000174576.4	known	0.00	0	105.5	0	135;76	n	0.02	2	94.5	2	124;65	y	0.02	1	45.0	1	51;39	n	0.01	1	96.5	1	113;80	n	0.00	0	74.5	0	75;74	n	0.00	0	38.0	0	48;28	n	0.00	0	81.0	0	93;69	n	0.00	0	27.0	0	37;17	n	0.03	2	66.5	2	89;44	y	0.00	0	113.0	0	129;97	n	0.00	0	79.0	0	94;64	n	0.00	0	70.0	0	83;57	n	ENSMUSG00000096727.4	Psmb9	chr17	protein_coding	proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)
known_NIR_8246	chr17	34402718	34403130	-	34402718	34403256	A5SS	ENSMUST00000174576.4	known	0.02	2	98	2	98	y	0.00	0	94	0	94	n	0.00	0	35	0	35	n	0.02	2	99	2	99	y	0.00	0	68	0	68	n	0.00	0	29	0	29	n	0.00	0	59	0	59	n	0.00	0	31	0	31	n	0.00	0	37	0	37	n	0.00	0	126	0	126	n	0.00	0	76	0	76	n	0.00	0	51	0	51	n	ENSMUSG00000096727.4	Psmb9	chr17	protein_coding	proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)
known_NIR_8247	chr17	34404771	34405865	-	34404771	34406224	A5SS	ENSMUST00000174576.4	known	0.01	1	89	1	89	n	0.04	3	82	3	82	y	0.00	0	36	0	36	n	0.00	0	75	0	75	n	0.06	3	50	3	50	y	0.00	0	25	0	25	n	0.00	0	63	0	63	n	0.00	0	34	0	34	n	0.04	2	54	2	54	y	0.02	2	87	2	87	y	0.00	0	78	0	78	n	0.00	0	60	0	60	n	ENSMUSG00000096727.4	Psmb9	chr17	protein_coding	proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)
known_NIR_8248	chr17	34411939	34412132	+	34411939	34412102	A3SS	ENSMUST00000170086.8	known	0.00	0	50	0	50	n	0.00	0	41	0	41	n	0.08	5	54	5	54	y	0.13	9	59	9	59	y	0.00	0	65	0	65	n	0.00	0	15	0	15	n	0.00	0	35	0	35	n	0.09	3	30	3	30	y	0.00	0	33	0	33	n	0.10	7	63	7	63	y	0.00	0	41	0	41	n	0.00	0	58	0	58	n	ENSMUSG00000037321.18	Tap1	chr17	protein_coding	transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)
known_NIR_8249	chr17	34525021	34528618	+	34525021	34528565	A3SS	ENSMUST00000235530.2	known	0.08	3	36	3	36	y	0.04	1	24	1	24	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.07	1	14	1	14	n	0.00	0	2	0	2	n	0.00	0	18	0	18	n	0.00	0	7	0	7	n	0.00	0	29	0	29	n	0.00	0	25	0	25	n	0.03	1	29	1	29	n	0.04	2	50	2	50	y	ENSMUSG00000060586.12	H2-Eb1	chr17	protein_coding	histocompatibility 2, class II antigen E beta
known_NIR_8250	chr17	34809537	34809754	+	34809537	34809716	A3SS	ENSMUST00000038244.15	known	0.12	1	7	1	7	n	0.00	0	8	0	8	n	0.10	2	19	2	19	y	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.10	1	9	1	9	n	0.22	2	7	2	7	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.08	1	11	1	11	n	0.00	0	12	0	12	n	ENSMUSG00000034786.18	Gpsm3	chr17	protein_coding	G-protein signalling modulator 3 (AGS3-like, C. elegans)
known_NIR_8251	chr17	34811748	34812546	+	34810466	34812546	A5SS	ENSMUST00000173328.8	known	0.94	29	2	29	2	y	1.00	40	0	40	0	n	1.00	51	0	51	0	n	1.00	45	0	45	0	n	1.00	62	0	62	0	n	1.00	27	0	27	0	n	1.00	48	0	48	0	n	1.00	29	0	29	0	n	1.00	30	0	30	0	n	1.00	65	0	65	0	n	1.00	37	0	37	0	n	1.00	48	0	48	0	n	ENSMUSG00000034673.15	Pbx2	chr17	protein_coding	pre B cell leukemia homeobox 2
known_NIR_8252	chr17	34825145	34829419	+	34823916	34829419	A5SS	ENSMUST00000173242.8	known	0.71	10	4	10	4	y	0.86	6	1	6	1	n	0.88	15	2	15	2	y	0.40	4	6	4	6	y	0.82	18	4	18	4	y	1.00	9	0	9	0	n	0.77	20	6	20	6	y	1.00	9	0	9	0	n	0.86	12	2	12	2	y	0.69	11	5	11	5	y	0.80	4	1	4	1	n	0.75	6	2	6	2	n	ENSMUSG00000034254.18	Agpat1	chr17	protein_coding	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)
known_NIR_8253	chr17	34829900	34830248	+	34829979	34830248	A5SS	ENSMUST00000174041.8	known	0.20	2	8	2	8	y	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.14	2	12	2	12	y	0.00	0	11	0	11	n	0.15	2	11	2	11	y	0.11	1	8	1	8	n	0.12	1	7	1	7	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	ENSMUSG00000034254.18	Agpat1	chr17	protein_coding	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)
known_NIR_8254	chr17	34842088	34844810	-	34842088;34844718	34844611;34844810	ES	ENSMUST00000168709.3	known	0.02	3	143.0	3	155;131	y	0.01	1	110.5	1	127;94	n	0.00	0	149.5	0	159;140	n	0.01	1	139.5	1	156;123	n	0.00	0	197.0	0	208;186	n	0.00	0	99.5	0	108;91	n	0.01	2	189.5	2	210;169	y	0.00	0	109.5	0	113;106	n	0.00	0	93.0	0	107;79	n	0.02	3	167.0	3	168;166	y	0.00	0	134.0	0	134;134	n	0.00	0	133.5	0	142;125	n	ENSMUSG00000092176.2	Gm20460	chr17	lncRNA	predicted gene 20460
known_NIR_8255	chr17	34845969	34846096	-	34845969	34846299	A5SS	ENSMUST00000171121.9	known	0.18	2	9	2	9	y	0.00	0	23	0	23	n	0.00	0	34	0	34	n	0.24	4	13	4	13	y	0.05	2	36	2	36	y	0.09	2	20	2	20	y	0.08	2	24	2	24	y	0.13	4	27	4	27	y	0.04	1	24	1	24	n	0.23	5	17	5	17	y	0.04	1	23	1	23	n	0.04	1	24	1	24	n	ENSMUSG00000015474.17	Ppt2	chr17	protein_coding	palmitoyl-protein thioesterase 2
known_NIR_8256	chr17	34845969	34846096	-	34845969	34847092	A5SS	ENSMUST00000167097.9	known	0.06	2	33	2	33	y	0.00	0	15	0	15	n	0.00	0	16	0	16	n	0.11	4	33	4	33	y	0.06	2	30	2	30	y	0.18	2	9	2	9	y	0.06	2	29	2	29	y	0.24	4	13	4	13	y	0.04	1	24	1	24	n	0.10	5	44	5	44	y	0.04	1	26	1	26	n	0.04	1	27	1	27	n	ENSMUSG00000015474.17	Ppt2	chr17	protein_coding	palmitoyl-protein thioesterase 2
known_NIR_8257	chr17	34845969	34846221	-	34845969	34846299	A5SS	ENSMUST00000171121.9	known	0.10	1	9	1	9	n	0.00	0	23	0	23	n	0.11	4	34	4	34	y	0.07	1	13	1	13	n	0.00	0	36	0	36	n	0.00	0	20	0	20	n	0.00	0	24	0	24	n	0.07	2	27	2	27	y	0.00	0	24	0	24	n	0.00	0	17	0	17	n	0.08	2	23	2	23	y	0.00	0	24	0	24	n	ENSMUSG00000015474.17	Ppt2	chr17	protein_coding	palmitoyl-protein thioesterase 2
known_NIR_8258	chr17	34845969	34846345	-	34845969	34846299	A5SS	ENSMUST00000171121.9	known	0.00	0	9	0	9	n	0.00	0	23	0	23	n	0.06	2	34	2	34	y	0.00	0	13	0	13	n	0.00	0	36	0	36	n	0.00	0	20	0	20	n	0.00	0	24	0	24	n	0.04	1	27	1	27	n	0.00	0	24	0	24	n	0.00	0	17	0	17	n	0.00	0	23	0	23	n	0.00	0	24	0	24	n	ENSMUSG00000015474.17	Ppt2	chr17	protein_coding	palmitoyl-protein thioesterase 2
known_NIR_8259	chr17	34845969	34846345	-	34845969	34847092	A5SS	ENSMUST00000167097.9	known	0.00	0	33	0	33	n	0.00	0	15	0	15	n	0.11	2	16	2	16	y	0.00	0	33	0	33	n	0.00	0	30	0	30	n	0.00	0	9	0	9	n	0.00	0	29	0	29	n	0.07	1	13	1	13	n	0.00	0	24	0	24	n	0.00	0	44	0	44	n	0.00	0	26	0	26	n	0.00	0	27	0	27	n	ENSMUSG00000015474.17	Ppt2	chr17	protein_coding	palmitoyl-protein thioesterase 2
known_NIR_8260	chr17	34845969	34846907	-	34845969	34846299	5pMXE	ENSMUST00000171121.9	known	0.10	1	9	1	9	n	0.08	2	23	2	23	y	0.00	0	34	0	34	n	0.07	1	13	1	13	n	0.08	3	36	3	36	y	0.00	0	20	0	20	n	0.04	1	24	1	24	n	0.04	1	27	1	27	n	0.04	1	24	1	24	n	0.11	2	17	2	17	y	0.00	0	23	0	23	n	0.00	0	24	0	24	n	ENSMUSG00000015474.17	Ppt2	chr17	protein_coding	palmitoyl-protein thioesterase 2
known_NIR_8261	chr17	34845969	34847092	-	34845969	34846221	5pMXE	ENSMUST00000064953.15	known	0.97	33	1	33	1	n	1.00	15	0	15	0	n	0.80	16	4	16	4	y	0.97	33	1	33	1	n	1.00	30	0	30	0	n	1.00	9	0	9	0	n	1.00	29	0	29	0	n	0.87	13	2	13	2	y	1.00	24	0	24	0	n	1.00	44	0	44	0	n	0.93	26	2	26	2	y	1.00	27	0	27	0	n	ENSMUSG00000015474.17	Ppt2	chr17	protein_coding	palmitoyl-protein thioesterase 2
known_NIR_8262	chr17	34845969	34847092	-	34845969	34846299	5pMXE	ENSMUST00000171121.9	known	0.79	33	9	33	9	y	0.39	15	23	15	23	y	0.32	16	34	16	34	y	0.72	33	13	33	13	y	0.45	30	36	30	36	y	0.31	9	20	9	20	y	0.55	29	24	29	24	y	0.33	13	27	13	27	y	0.50	24	24	24	24	y	0.72	44	17	44	17	y	0.53	26	23	26	23	y	0.53	27	24	27	24	y	ENSMUSG00000015474.17	Ppt2	chr17	protein_coding	palmitoyl-protein thioesterase 2
known_NIR_8263	chr17	34845969	34847092	-	34845969	34846907	5pMXE	ENSMUST00000166040.9	known	0.97	33	1	33	1	n	0.88	15	2	15	2	y	1.00	16	0	16	0	n	0.97	33	1	33	1	n	0.91	30	3	30	3	y	1.00	9	0	9	0	n	0.97	29	1	29	1	n	0.93	13	1	13	1	n	0.96	24	1	24	1	n	0.96	44	2	44	2	y	1.00	26	0	26	0	n	1.00	27	0	27	0	n	ENSMUSG00000015474.17	Ppt2	chr17	protein_coding	palmitoyl-protein thioesterase 2
known_NIR_8264	chr17	34863927	34864153	+	34863927	34864219	A3SS	ENSMUST00000036720.9	known	0.00	0	13	0	13	n	0.13	2	13	2	13	y	0.15	5	28	5	28	y	0.05	1	19	1	19	n	0.12	3	23	3	23	y	0.19	3	13	3	13	y	0.04	1	25	1	25	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	16	0	16	n	0.17	3	15	3	15	y	0.06	1	16	1	16	n	ENSMUSG00000033739.9	Fkbpl	chr17	protein_coding	FK506 binding protein-like
known_NIR_8265	chr17	34954581	34954679	-	34954581	34954710	A5SS	ENSMUST00000069507.9	known	0.01	9	1073	9	1073	y	0.01	11	1080	11	1080	y	0.01	11	1355	11	1355	y	0.01	15	1817	15	1817	y	0.01	16	2206	16	2206	y	0.00	4	821	4	821	y	0.02	37	1676	37	1676	y	0.01	12	1297	12	1297	y	0.02	22	1274	22	1274	y	0.01	23	2173	23	2173	y	0.01	16	1121	16	1121	y	0.01	14	1786	14	1786	y	ENSMUSG00000073418.5	C4b	chr17	protein_coding	complement component 4B (Chido blood group)
known_NIR_8266	chr17	35029353	35030091	-	35029353;35029577	35029475;35030091	ES	ENSMUST00000160679.8	known	0.39	19	30.0	19	49;11	y	0.34	16	31.0	16	36;26	y	0.46	23	27.0	23	40;14	y	0.31	16	36.0	16	51;21	y	0.35	26	48.0	26	60;36	y	0.43	19	25.0	19	35;15	y	0.34	29	55.5	29	72;39	y	0.42	12	16.5	12	20;13	y	0.40	17	25.0	17	30;20	y	0.39	28	44.0	28	57;31	y	0.30	14	32.0	14	38;26	y	0.31	23	51.5	23	68;35	y	ENSMUSG00000015451.17	C4a	chr17	lncRNA	complement component 4A (Rodgers blood group)
known_NIR_8267	chr17	35030840	35030972	-	35030840	35031800	A5SS	ENSMUST00000160679.8	known	0.00	0	67	0	67	n	0.00	0	47	0	47	n	0.07	6	83	6	83	y	0.03	2	57	2	57	y	0.00	0	81	0	81	n	0.10	3	27	3	27	y	0.06	4	65	4	65	y	0.02	1	45	1	45	n	0.00	0	50	0	50	n	0.02	1	54	1	54	n	0.12	6	45	6	45	y	0.03	3	101	3	101	y	ENSMUSG00000015451.17	C4a	chr17	lncRNA	complement component 4A (Rodgers blood group)
known_NIR_8268	chr17	35034550	35035368	-	35034550;35035239	35035036;35035368	ES	ENSMUST00000160679.8	known	0.00	0	47.5	0	63;32	n	0.00	0	27.0	0	29;25	n	0.00	0	51.0	0	62;40	n	0.00	0	60.5	0	54;67	n	0.00	0	55.0	0	67;43	n	0.00	0	35.0	0	41;29	n	0.00	0	59.5	0	71;48	n	0.00	0	32.5	0	35;30	n	0.00	0	34.0	0	43;25	n	0.00	0	44.5	0	57;32	n	0.05	2	34.5	2	44;25	y	0.00	0	69.0	0	81;57	n	ENSMUSG00000015451.17	C4a	chr17	lncRNA	complement component 4A (Rodgers blood group)
known_NIR_8269	chr17	35043300	35043727	-	35043300;35043637	35043490;35043727	ES	ENSMUST00000077477.12	known	0.03	1	33.5	1	27;40	n	0.03	1	31.5	1	21;42	n	0.04	2	44.5	2	31;58	y	0.07	2	26.0	2	17;35	y	0.03	1	31.5	1	16;47	n	0.00	0	20.5	0	12;29	n	0.00	0	33.5	0	20;47	n	0.00	0	12.5	0	6;19	n	0.16	3	15.5	3	8;23	y	0.02	1	43.5	1	29;58	n	0.00	0	27.0	0	19;35	n	0.04	1	23.0	1	16;30	n	ENSMUSG00000061207.12	Stk19	chr17	protein_coding	serine/threonine kinase 19
known_NIR_8270	chr17	35043824	35044579	-	35043824	35050974	A5SS	ENSMUST00000162055.8	known	1.00	7	0	7	0	n	0.40	2	3	2	3	n	0.56	9	7	9	7	y	0.75	6	2	6	2	n	1.00	5	0	5	0	n	0.89	8	1	8	1	n	1.00	2	0	2	0	n	0.50	3	3	3	3	n	1.00	2	0	2	0	n	1.00	8	0	8	0	n	1.00	4	0	4	0	n	0.67	4	2	4	2	n	ENSMUSG00000061207.12	Stk19	chr17	protein_coding	serine/threonine kinase 19
known_NIR_8271	chr17	35043824	35044579	-	35043824	35050989	A5SS	ENSMUST00000077477.12	known	0.13	7	46	7	46	y	0.03	2	58	2	58	y	0.09	9	87	9	87	y	0.12	6	44	6	44	y	0.10	5	46	5	46	y	0.24	8	25	8	25	y	0.03	2	61	2	61	y	0.10	3	26	3	26	y	0.07	2	26	2	26	y	0.12	8	59	8	59	y	0.09	4	42	4	42	y	0.07	4	52	4	52	y	ENSMUSG00000061207.12	Stk19	chr17	protein_coding	serine/threonine kinase 19
known_NIR_8272	chr17	35043824	35044579	-	35043824	35055406	A5SS	ENSMUST00000161885.8	known	0.88	7	1	7	1	n	1.00	2	0	2	0	n	0.90	9	1	9	1	n	1.00	6	0	6	0	n	1.00	5	0	5	0	n	1.00	8	0	8	0	n	1.00	2	0	2	0	n	1.00	3	0	3	0	n	1.00	2	0	2	0	n	0.73	8	3	8	3	y	1.00	4	0	4	0	n	1.00	4	0	4	0	n	ENSMUSG00000061207.12	Stk19	chr17	protein_coding	serine/threonine kinase 19
known_NIR_8273	chr17	35043824	35050974	-	35043824	35050989	A5SS	ENSMUST00000077477.12	known	0.00	0	46	0	46	n	0.05	3	58	3	58	y	0.07	7	87	7	87	y	0.04	2	44	2	44	y	0.00	0	46	0	46	n	0.04	1	25	1	25	n	0.00	0	61	0	61	n	0.10	3	26	3	26	y	0.00	0	26	0	26	n	0.00	0	59	0	59	n	0.00	0	42	0	42	n	0.04	2	52	2	52	y	ENSMUSG00000061207.12	Stk19	chr17	protein_coding	serine/threonine kinase 19
known_NIR_8274	chr17	35043824	35050989	-	35043824	35055406	A5SS	ENSMUST00000161885.8	known	0.98	46	1	46	1	n	1.00	58	0	58	0	n	0.99	87	1	87	1	n	1.00	44	0	44	0	n	1.00	46	0	46	0	n	1.00	25	0	25	0	n	1.00	61	0	61	0	n	1.00	26	0	26	0	n	1.00	26	0	26	0	n	0.95	59	3	59	3	y	1.00	42	0	42	0	n	1.00	52	0	52	0	n	ENSMUSG00000061207.12	Stk19	chr17	protein_coding	serine/threonine kinase 19
known_NIR_8275	chr17	35051517	35055406	-	35043824	35055406	A3SS	ENSMUST00000161885.8	known	0.99	72	1	72	1	n	1.00	67	0	67	0	n	0.99	94	1	94	1	n	1.00	61	0	61	0	n	1.00	91	0	91	0	n	1.00	37	0	37	0	n	1.00	96	0	96	0	n	1.00	37	0	37	0	n	1.00	41	0	41	0	n	0.97	84	3	84	3	y	1.00	55	0	55	0	n	1.00	59	0	59	0	n	ENSMUSG00000061207.12	Stk19	chr17	protein_coding	serine/threonine kinase 19
known_NIR_8276	chr17	35056217	35056369	+	35056192	35056369	A5SS	ENSMUST00000173874.8	known	0.36	20	36	20	36	y	0.21	10	37	10	37	y	0.51	39	38	39	38	y	0.28	16	41	16	41	y	0.49	33	35	33	35	y	0.40	18	27	18	27	y	0.42	23	32	23	32	y	0.24	9	29	9	29	y	0.37	15	26	15	26	y	0.42	22	30	22	30	y	0.34	19	37	19	37	y	0.31	16	35	16	35	y	ENSMUSG00000040482.17	Dxo	chr17	protein_coding	decapping exoribonuclease
known_NIR_8277	chr17	35057112	35057275	+	35057112	35057202	A3SS	ENSMUST00000173874.8	known	0.00	0	46	0	46	n	0.00	0	50	0	50	n	0.00	0	72	0	72	n	0.00	0	42	0	42	n	0.00	0	47	0	47	n	0.09	6	58	6	58	y	0.00	0	41	0	41	n	0.11	4	34	4	34	y	0.00	0	43	0	43	n	0.00	0	38	0	38	n	0.00	0	58	0	58	n	0.00	0	44	0	44	n	ENSMUSG00000040482.17	Dxo	chr17	protein_coding	decapping exoribonuclease
known_NIR_8278	chr17	35064213	35064804	-	35064731	35064804	A3SS&ES	ENSMUST00000174226.8	known	0.00	0	66	0	66	n	0.00	0	63	0	63	n	0.00	0	70	0	70	n	0.00	0	66	0	66	n	0.00	0	88	0	88	n	0.00	0	39	0	39	n	0.00	0	72	0	72	n	0.02	1	40	1	40	n	0.04	2	44	2	44	y	0.00	0	67	0	67	n	0.00	0	55	0	55	n	0.00	0	84	0	84	n	ENSMUSG00000040356.17	Skiv2l	chr17	protein_coding	superkiller viralicidic activity 2-like (S. cerevisiae)
known_NIR_8279	chr17	35065123	35065498	-	35065149	35065498	A3SS	ENSMUST00000174226.8	known	0.05	4	74	4	74	y	0.04	2	50	2	50	y	0.02	2	87	2	87	y	0.00	0	88	0	88	n	0.00	0	111	0	111	n	0.00	0	63	0	63	n	0.05	4	72	4	72	y	0.00	0	78	0	78	n	0.00	0	73	0	73	n	0.02	2	85	2	85	y	0.00	0	76	0	76	n	0.03	3	94	3	94	y	ENSMUSG00000040356.17	Skiv2l	chr17	protein_coding	superkiller viralicidic activity 2-like (S. cerevisiae)
known_NIR_8280	chr17	35069438	35069887	+	35069564	35069887	A5SS	ENSMUST00000173357.8	known	0.42	13	18	13	18	y	0.68	21	10	21	10	y	0.71	29	12	29	12	y	0.65	20	11	20	11	y	0.61	22	14	22	14	y	0.50	13	13	13	13	y	0.48	15	16	15	16	y	0.72	18	7	18	7	y	0.42	11	15	11	15	y	0.37	20	34	20	34	y	0.41	12	17	12	17	y	0.53	32	28	32	28	y	ENSMUSG00000024369.17	Nelfe	chr17	protein_coding	negative elongation factor complex member E, Rdbp
known_NIR_8281	chr17	35069438	35069887	+	35069650	35069887	A5SS	ENSMUST00000097343.11	known	0.62	13	8	13	8	y	0.95	21	1	21	1	n	0.62	29	18	29	18	y	0.80	20	5	20	5	y	0.52	22	20	22	20	y	0.65	13	7	13	7	y	0.75	15	5	15	5	y	0.55	18	15	18	15	y	0.58	11	8	11	8	y	0.77	20	6	20	6	y	0.55	12	10	12	10	y	0.86	32	5	32	5	y	ENSMUSG00000024369.17	Nelfe	chr17	protein_coding	negative elongation factor complex member E, Rdbp
known_NIR_8282	chr17	35069564	35069887	+	35069650	35069887	A5SS	ENSMUST00000097343.11	known	0.69	18	8	18	8	y	0.91	10	1	10	1	n	0.40	12	18	12	18	y	0.69	11	5	11	5	y	0.41	14	20	14	20	y	0.65	13	7	13	7	y	0.76	16	5	16	5	y	0.32	7	15	7	15	y	0.65	15	8	15	8	y	0.85	34	6	34	6	y	0.63	17	10	17	10	y	0.85	28	5	28	5	y	ENSMUSG00000024369.17	Nelfe	chr17	protein_coding	negative elongation factor complex member E, Rdbp
known_NIR_8283	chr17	35075905	35075980	-	35075921	35075980	A3SS	ENSMUST00000141295.8	known	0.99	5535	58	5535	58	y	0.99	7268	93	7268	93	y	0.99	10763	108	10763	108	y	0.99	4880	65	4880	65	y	0.99	7897	90	7897	90	y	0.99	6945	78	6945	78	y	0.99	7774	97	7774	97	y	0.99	7056	77	7056	77	y	0.99	4396	52	4396	52	y	0.99	6307	76	6307	76	y	0.99	4935	61	4935	61	y	0.99	4942	68	4942	68	y	ENSMUSG00000090231.11	Cfb	chr17	protein_coding	complement factor B
known_NIR_8284	chr17	35076108	35076195	-	35076112	35076195	A3SS	ENSMUST00000141295.8	known	0.06	341	5723	341	5723	y	0.05	361	7119	361	7119	y	0.05	631	11447	631	11447	y	0.05	276	5177	276	5177	y	0.05	492	8753	492	8753	y	0.05	387	7652	387	7652	y	0.05	458	8186	458	8186	y	0.05	391	7318	391	7318	y	0.05	254	4825	254	4825	y	0.05	331	6670	331	6670	y	0.05	264	5234	264	5234	y	0.05	293	5275	293	5275	y	ENSMUSG00000090231.11	Cfb	chr17	protein_coding	complement factor B
known_NIR_8285	chr17	35076797	35077474	-	35076797	35077013	5pMXE	ENSMUST00000153400.8	known	0.00	0	3529	0	3529	n	0.00	0	4147	0	4147	n	0.00	10	7736	10	7736	y	0.00	0	3729	0	3729	n	0.00	1	5547	1	5547	n	0.00	0	4931	0	4931	n	0.00	3	5081	3	5081	y	0.00	0	5125	0	5125	n	0.00	0	3012	0	3012	n	0.00	0	4353	0	4353	n	0.00	2	3139	2	3139	y	0.00	2	3384	2	3384	y	ENSMUSG00000090231.11	Cfb	chr17	protein_coding	complement factor B
known_NIR_8286	chr17	35076797	35077474	-	35076797;35077130	35077013;35077474	ES	ENSMUST00000141295.8	known	0.00	0	3824.0	0	3529;4119	n	0.00	0	4274.5	0	4147;4402	n	0.00	10	8258.5	10	7736;8781	y	0.00	0	3941.0	0	3729;4153	n	0.00	1	6057.5	1	5547;6568	n	0.00	0	5331.0	0	4931;5731	n	0.00	3	5386.5	3	5081;5692	y	0.00	0	5436.0	0	5125;5747	n	0.00	0	3149.5	0	3012;3287	n	0.00	0	4546.0	0	4353;4739	n	0.00	2	3279.0	2	3139;3419	y	0.00	2	3674.5	2	3384;3965	y	ENSMUSG00000090231.11	Cfb	chr17	protein_coding	complement factor B
known_NIR_8287	chr17	35076797	35077985	-	35076797	35077013	5pMXE	ENSMUST00000153400.8	known	0.00	2	3529	2	3529	y	0.00	0	4147	0	4147	n	0.00	12	7736	12	7736	y	0.00	0	3729	0	3729	n	0.00	3	5547	3	5547	y	0.00	6	4931	6	4931	y	0.00	10	5081	10	5081	y	0.00	5	5125	5	5125	y	0.00	0	3012	0	3012	n	0.00	1	4353	1	4353	n	0.00	6	3139	6	3139	y	0.00	0	3384	0	3384	n	ENSMUSG00000090231.11	Cfb	chr17	protein_coding	complement factor B
known_NIR_8288	chr17	35076797;35077571	35077474;35077985	-	35076797	35077985	cassetteExon	ENSMUST00000176332.2	known	1.00	2096.5	2	0;4193	2	n	1.00	2122.0	0	0;4244	0	n	1.00	4737.0	12	10;9464	12	y	1.00	2274.5	0	0;4549	0	n	1.00	3386.0	3	1;6771	3	n	1.00	3075.5	6	0;6151	6	n	1.00	3093.5	10	3;6184	10	y	1.00	3163.5	5	0;6327	5	n	1.00	1776.5	0	0;3553	0	n	1.00	2468.5	1	0;4937	1	n	1.00	1736.5	6	2;3471	6	y	1.00	2060.5	0	2;4119	0	n	ENSMUSG00000090231.11	Cfb	chr17	protein_coding	complement factor B
known_NIR_8289	chr17	35095486;35099043	35098858;35100548	-	35095486	35100548	cassetteExon	ENSMUST00000146299.8	known	1.00	206.5	1	189;224	1	n	1.00	174.0	0	174;174	0	n	1.00	180.0	0	175;185	0	n	1.00	311.0	0	292;330	0	n	1.00	345.5	0	339;352	0	n	1.00	167.0	0	169;165	0	n	1.00	217.5	0	215;220	0	n	1.00	204.0	0	209;199	0	n	1.00	216.5	0	220;213	0	n	1.00	304.5	0	346;263	0	n	1.00	210.5	0	193;228	0	n	0.99	335.0	2	339;331	2	y	ENSMUSG00000092511.8	Gm20547	chr17	protein_coding	predicted gene 20547
known_NIR_8290	chr17	35096450	35098858	-	35095486	35098858	A3SS	ENSMUST00000025230.15	known	0.01	2	189	2	189	y	0.04	8	174	8	174	y	0.02	4	175	4	175	y	0.01	3	292	3	292	y	0.02	6	339	6	339	y	0.02	3	169	3	169	y	0.02	4	215	4	215	y	0.01	2	209	2	209	y	0.01	3	220	3	220	y	0.01	4	346	4	346	y	0.01	1	193	1	193	n	0.01	2	339	2	339	y	ENSMUSG00000024371.15	C2	chr17	protein_coding	complement component 2 (within H-2S)
known_NIR_8291	chr17	35118892	35121149	+	35118892	35121990	A3SS	ENSMUST00000114033.9	known	0.04	3	66	3	66	y	0.01	1	67	1	67	n	0.02	2	101	2	101	y	0.02	2	86	2	86	y	0.01	1	109	1	109	n	0.15	7	39	7	39	y	0.02	2	87	2	87	y	0.06	4	67	4	67	y	0.00	0	64	0	64	n	0.00	0	123	0	123	n	0.02	2	81	2	81	y	0.04	3	73	3	73	y	ENSMUSG00000013787.16	Ehmt2	chr17	protein_coding	euchromatic histone lysine N-methyltransferase 2
known_NIR_8292	chr17	35124432	35124886	+	35124432	35124586	A3SS	ENSMUST00000138500.2	known	0.31	25	56	25	56	y	0.31	25	56	25	56	y	0.40	39	59	39	59	y	0.21	15	57	15	57	y	0.38	46	74	46	74	y	0.43	28	37	28	37	y	0.28	31	80	31	80	y	0.35	25	46	25	46	y	0.23	16	53	16	53	y	0.36	47	83	47	83	y	0.19	16	68	16	68	y	0.33	35	70	35	70	y	ENSMUSG00000013787.16	Ehmt2	chr17	protein_coding	euchromatic histone lysine N-methyltransferase 2
known_NIR_8293	chr17	35124432	35124886	+	35124432;35124687	35124586;35124886	ES	ENSMUST00000114033.9	known	0.31	25	56.5	25	56;57	y	0.35	25	46.5	25	56;37	y	0.40	39	59.5	39	59;60	y	0.22	15	53.5	15	57;50	y	0.36	46	81.0	46	74;88	y	0.41	28	40.5	28	37;44	y	0.29	31	76.0	31	80;72	y	0.37	25	42.5	25	46;39	y	0.24	16	49.5	16	53;46	y	0.39	47	75.0	47	83;67	y	0.19	16	67.0	16	68;66	y	0.35	35	65.5	35	70;61	y	ENSMUSG00000013787.16	Ehmt2	chr17	protein_coding	euchromatic histone lysine N-methyltransferase 2
known_NIR_8294	chr17	35125853	35125929	+	35125853	35125959	A3SS	ENSMUST00000114033.9	known	0.21	17	63	17	63	y	0.11	8	64	8	64	y	0.13	15	102	15	102	y	0.13	12	78	12	78	y	0.07	7	95	7	95	y	0.16	10	52	10	52	y	0.15	13	73	13	73	y	0.16	8	42	8	42	y	0.26	18	52	18	52	y	0.12	11	80	11	80	y	0.20	14	55	14	55	y	0.18	15	70	15	70	y	ENSMUSG00000013787.16	Ehmt2	chr17	protein_coding	euchromatic histone lysine N-methyltransferase 2
known_NIR_8295	chr17	35126413	35126502	+	35126413	35126498	A3SS	ENSMUST00000114033.9	known	0.00	0	104	0	104	n	0.00	0	88	0	88	n	0.05	6	118	6	118	y	0.00	0	91	0	91	n	0.06	10	158	10	158	y	0.00	0	77	0	77	n	0.00	0	113	0	113	n	0.00	0	70	0	70	n	0.00	0	73	0	73	n	0.00	0	132	0	132	n	0.10	11	104	11	104	y	0.00	0	118	0	118	n	ENSMUSG00000013787.16	Ehmt2	chr17	protein_coding	euchromatic histone lysine N-methyltransferase 2
known_NIR_8296	chr17	35127289	35127380	+	35127254	35127380	A5SS	ENSMUST00000114033.9	known	0.00	0	96	0	96	n	0.00	0	100	0	100	n	0.01	1	107	1	107	n	0.01	1	87	1	87	n	0.00	0	140	0	140	n	0.02	2	93	2	93	y	0.00	0	124	0	124	n	0.00	0	96	0	96	n	0.00	0	66	0	66	n	0.00	0	119	0	119	n	0.00	0	103	0	103	n	0.00	0	105	0	105	n	ENSMUSG00000013787.16	Ehmt2	chr17	protein_coding	euchromatic histone lysine N-methyltransferase 2
known_NIR_8297	chr17	35169451	35170861	-	35169451	35169674	5pMXE	ENSMUST00000174464.2	known	0.40	39	58	39	58	y	0.43	39	52	39	52	y	0.45	83	103	83	103	y	0.31	17	37	17	37	y	0.48	53	57	53	57	y	0.53	48	42	48	42	y	0.43	48	63	48	63	y	0.47	29	33	29	33	y	0.39	29	45	29	45	y	0.38	37	61	37	61	y	0.31	23	52	23	52	y	0.35	34	63	34	63	y	ENSMUSG00000092203.8	1110038B12Rik	chr17	lncRNA	RIKEN cDNA 1110038B12 gene
known_NIR_8298	chr17	35169451	35170861	-	35169451;35169823	35169674;35170861	ES	ENSMUST00000173811.8	known	0.47	39	44.0	39	58;30	y	0.49	39	40.0	39	52;28	y	0.52	83	75.5	83	103;48	y	0.35	17	31.0	17	37;25	y	0.57	53	40.0	53	57;23	y	0.59	48	33.5	48	42;25	y	0.50	48	48.0	48	63;33	y	0.53	29	26.0	29	33;19	y	0.46	29	33.5	29	45;22	y	0.42	37	50.5	37	61;40	y	0.36	23	41.0	23	52;30	y	0.41	34	48.5	34	63;34	y	ENSMUSG00000092203.8	1110038B12Rik	chr17	lncRNA	RIKEN cDNA 1110038B12 gene
known_NIR_8299	chr17	35169451;35170901	35170861;35171112	-	35169451;35169823	35169674;35171112	MXE	ENSMUST00000174714.8	known	0.62	57.5	34.5	39;76	58;11	y	0.62	60.5	36.5	39;82	52;21	y	0.67	123.5	60.0	83;164	103;17	y	0.59	31.0	21.5	17;45	37;6	y	0.65	61.0	33.5	53;69	57;10	y	0.72	68.0	26.5	48;88	42;11	y	0.62	64.0	40.0	48;80	63;17	y	0.58	35.5	26.0	29;42	33;19	y	0.61	40.5	26.0	29;52	45;7	y	0.65	67.0	35.5	37;97	61;10	y	0.59	43.0	30.5	23;63	52;9	y	0.56	50.5	39.5	34;67	63;16	y	ENSMUSG00000092203.8	1110038B12Rik	chr17	lncRNA	RIKEN cDNA 1110038B12 gene
known_NIR_8300	chr17	35169823	35171112	-	35169823	35170861	A5SS	ENSMUST00000174039.8	known	0.27	11	30	11	30	y	0.43	21	28	21	28	y	0.26	17	48	17	48	y	0.19	6	25	6	25	y	0.30	10	23	10	23	y	0.31	11	25	11	25	y	0.34	17	33	17	33	y	0.50	19	19	19	19	y	0.24	7	22	7	22	y	0.20	10	40	10	40	y	0.23	9	30	9	30	y	0.32	16	34	16	34	y	ENSMUSG00000092203.8	1110038B12Rik	chr17	lncRNA	RIKEN cDNA 1110038B12 gene
known_NIR_8301	chr17	35169823	35171112	-	35170901	35171112	3pMXE	ENSMUST00000174173.2	known	0.13	11	76	11	76	y	0.20	21	82	21	82	y	0.09	17	164	17	164	y	0.12	6	45	6	45	y	0.13	10	69	10	69	y	0.11	11	88	11	88	y	0.18	17	80	17	80	y	0.31	19	42	19	42	y	0.12	7	52	7	52	y	0.09	10	97	10	97	y	0.12	9	63	9	63	y	0.19	16	67	16	67	y	ENSMUSG00000092203.8	1110038B12Rik	chr17	lncRNA	RIKEN cDNA 1110038B12 gene
known_NIR_8302	chr17	35169823;35170901	35170861;35171112	-	35169823	35171112	cassetteExon	ENSMUST00000174714.8	known	0.83	53.0	11	30;76	11	y	0.72	55.0	21	28;82	21	y	0.86	106.0	17	48;164	17	y	0.85	35.0	6	25;45	6	y	0.82	46.0	10	23;69	10	y	0.84	56.5	11	25;88	11	y	0.77	56.5	17	33;80	17	y	0.62	30.5	19	19;42	19	y	0.84	37.0	7	22;52	7	y	0.87	68.5	10	40;97	10	y	0.84	46.5	9	30;63	9	y	0.76	50.5	16	34;67	16	y	ENSMUSG00000092203.8	1110038B12Rik	chr17	lncRNA	RIKEN cDNA 1110038B12 gene
known_NIR_8303	chr17	35201061	35204085	+	35201061	35201596	3pMXE	ENSMUST00000172523.2	known	0.09	6	61	6	61	y	0.06	3	45	3	45	y	0.08	4	44	4	44	y	0.09	4	43	4	43	y	0.02	2	81	2	81	y	0.02	1	40	1	40	n	0.09	7	70	7	70	y	0.09	3	31	3	31	y	0.17	9	43	9	43	y	0.04	3	64	3	64	y	0.06	4	60	4	60	y	0.10	6	52	6	52	y	ENSMUSG00000007050.18	Lsm2	chr17	protein_coding	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated
known_NIR_8304	chr17	35201061	35204085	+	35201061;35201663	35201596;35204085	ES	ENSMUST00000114011.11	known	0.10	6	56.5	6	61;52	y	0.06	3	51.5	3	45;58	y	0.07	4	56.5	4	44;69	y	0.07	4	55.5	4	43;68	y	0.03	2	75.0	2	81;69	y	0.03	1	35.0	1	40;30	n	0.08	7	82.0	7	70;94	y	0.08	3	32.5	3	31;34	y	0.16	9	47.0	9	43;51	y	0.04	3	73.5	3	64;83	y	0.05	4	73.0	4	60;86	y	0.10	6	57.0	6	52;62	y	ENSMUSG00000007050.18	Lsm2	chr17	protein_coding	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated
known_NIR_8305	chr17	35201061	35204085	+	35201663	35204085	5pMXE	ENSMUST00000174860.8	known	0.10	6	52	6	52	y	0.05	3	58	3	58	y	0.05	4	69	4	69	y	0.06	4	68	4	68	y	0.03	2	69	2	69	y	0.03	1	30	1	30	n	0.07	7	94	7	94	y	0.08	3	34	3	34	y	0.15	9	51	9	51	y	0.03	3	83	3	83	y	0.04	4	86	4	86	y	0.09	6	62	6	62	y	ENSMUSG00000007050.18	Lsm2	chr17	protein_coding	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated
known_NIR_8306	chr17	35201343	35201596	+	35201061	35201596	A5SS	ENSMUST00000172523.2	known	0.00	0	61	0	61	n	0.02	1	45	1	45	n	0.00	0	44	0	44	n	0.07	3	43	3	43	y	0.01	1	81	1	81	n	0.05	2	40	2	40	y	0.00	0	70	0	70	n	0.03	1	31	1	31	n	0.00	0	43	0	43	n	0.00	0	64	0	64	n	0.02	1	60	1	60	n	0.05	3	52	3	52	y	ENSMUSG00000007050.18	Lsm2	chr17	protein_coding	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated
known_NIR_8307	chr17	35201663	35204085	+	35201663	35203956	A3SS	ENSMUST00000174434.8	known	1.00	52	0	52	0	n	1.00	58	0	58	0	n	1.00	69	0	69	0	n	1.00	68	0	68	0	n	1.00	69	0	69	0	n	0.97	30	1	30	1	n	1.00	94	0	94	0	n	0.97	34	1	34	1	n	1.00	51	0	51	0	n	0.98	83	2	83	2	y	1.00	86	0	86	0	n	0.98	62	1	62	1	n	ENSMUSG00000007050.18	Lsm2	chr17	protein_coding	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated
known_NIR_8308	chr17	35310633	35310795	+	35310633	35313227	A3SS	ENSMUST00000007251.14	known	0.00	0	69	0	69	n	0.00	0	85	0	85	n	0.01	1	78	1	78	n	0.00	0	91	0	91	n	0.04	4	96	4	96	y	0.02	1	51	1	51	n	0.00	0	104	0	104	n	0.01	1	67	1	67	n	0.03	2	69	2	69	y	0.02	3	124	3	124	y	0.00	0	83	0	83	n	0.00	0	98	0	98	n	ENSMUSG00000007036.16	Abhd16a	chr17	protein_coding	abhydrolase domain containing 16A
known_NIR_8309	chr17	35319664	35319861	+	35319664	35319938	A3SS	ENSMUST00000007251.14	known	0.09	6	63	6	63	y	0.02	1	63	1	63	n	0.00	0	58	0	58	n	0.04	3	71	3	71	y	0.01	1	80	1	80	n	0.06	2	32	2	32	y	0.00	0	82	0	82	n	0.03	1	34	1	34	n	0.03	2	62	2	62	y	0.01	1	112	1	112	n	0.00	0	81	0	81	n	0.04	3	69	3	69	y	ENSMUSG00000007036.16	Abhd16a	chr17	protein_coding	abhydrolase domain containing 16A
known_NIR_8310	chr17	35335505	35336672	-	35335401	35336672	A3SS	ENSMUST00000173114.8	known	0.00	0	376	0	376	n	0.00	0	478	0	478	n	0.00	2	435	2	435	y	0.00	0	298	0	298	n	0.00	0	436	0	436	n	0.00	0	230	0	230	n	0.00	0	500	0	500	n	0.00	0	221	0	221	n	0.00	0	322	0	322	n	0.00	0	454	0	454	n	0.00	0	459	0	459	n	0.00	0	402	0	402	n	ENSMUSG00000024387.14	Csnk2b	chr17	protein_coding	casein kinase 2, beta polypeptide
known_NIR_8311	chr17	35340526	35342029	+	35340526;35341436	35341205;35342029	ES	ENSMUST00000173380.2	known	1.00	6	0.0	6	0;0	n	0.85	11	2.0	11	2;2	y	0.50	2	2.0	2	0;4	n	1.00	6	0.0	6	0;0	n	0.67	4	2.0	4	0;4	n	0.40	1	1.5	1	1;2	n	0.88	11	1.5	11	0;3	n	0.86	3	0.5	3	0;1	n	0.50	1	1.0	1	0;2	n	1.00	1	0.0	1	0;0	n	0.00	0	1.5	0	0;3	n	0.96	11	0.5	11	0;1	n	ENSMUSG00000092417.4	Gpank1	chr17	protein_coding	G patch domain and ankyrin repeats 1
known_NIR_8312	chr17	35340774	35342029	+	35340526	35342029	A5SS	ENSMUST00000173043.4	known	0.62	10	6	10	6	y	0.56	14	11	14	11	y	0.90	18	2	18	2	y	0.68	13	6	13	6	y	0.78	14	4	14	4	y	0.83	5	1	5	1	n	0.58	15	11	15	11	y	0.62	5	3	5	3	n	0.91	10	1	10	1	n	0.95	18	1	18	1	n	1.00	24	0	24	0	n	0.54	13	11	13	11	y	ENSMUSG00000092417.4	Gpank1	chr17	protein_coding	G patch domain and ankyrin repeats 1
known_NIR_8313	chr17	35340774	35342029	+	35340774	35341205	3pMXE	ENSMUST00000177018.2	known	0.83	10	2	10	2	y	0.70	14	6	14	6	y	0.82	18	4	18	4	y	0.81	13	3	13	3	y	0.78	14	4	14	4	y	0.56	5	4	5	4	n	0.94	15	1	15	1	n	1.00	5	0	5	0	n	1.00	10	0	10	0	n	0.90	18	2	18	2	y	0.86	24	4	24	4	y	0.93	13	1	13	1	n	ENSMUSG00000092417.4	Gpank1	chr17	protein_coding	G patch domain and ankyrin repeats 1
known_NIR_8314	chr17	35340774	35342029	+	35341436	35342029	A5SS&ES	ENSMUST00000173380.2	known	1.00	10	0	10	0	n	0.88	14	2	14	2	y	0.82	18	4	18	4	y	1.00	13	0	13	0	n	0.78	14	4	14	4	y	0.71	5	2	5	2	n	0.83	15	3	15	3	y	0.83	5	1	5	1	n	0.83	10	2	10	2	y	1.00	18	0	18	0	n	0.89	24	3	24	3	y	0.93	13	1	13	1	n	ENSMUSG00000092417.4	Gpank1	chr17	protein_coding	G patch domain and ankyrin repeats 1
known_NIR_8315	chr17	35340774;35341436	35341205;35342029	+	35340774	35342029	cassetteExon	ENSMUST00000165306.3	known	0.09	1.0	10	2;0	10	n	0.22	4.0	14	6;2	14	y	0.18	4.0	18	4;4	18	y	0.10	1.5	13	3;0	13	n	0.22	4.0	14	4;4	14	y	0.38	3.0	5	4;2	5	y	0.12	2.0	15	1;3	15	n	0.09	0.5	5	0;1	5	n	0.09	1.0	10	0;2	10	n	0.05	1.0	18	2;0	18	n	0.13	3.5	24	4;3	24	y	0.07	1.0	13	1;1	13	n	ENSMUSG00000092417.4	Gpank1	chr17	protein_coding	G patch domain and ankyrin repeats 1
known_NIR_8316	chr17	35354604	35355091	+	35354447	35355091	A5SS	ENSMUST00000166426.9	known	0.67	40	20	40	20	y	0.69	43	19	43	19	y	0.63	83	49	83	49	y	0.57	65	50	65	50	y	0.51	66	64	66	64	y	0.57	33	25	33	25	y	0.48	63	69	63	69	y	0.62	46	28	46	28	y	0.65	44	24	44	24	y	0.56	65	51	65	51	y	0.67	47	23	47	23	y	0.53	61	54	61	54	y	ENSMUSG00000024392.18	Bag6	chr17	protein_coding	BCL2-associated athanogene 6
known_NIR_8317	chr17	35354789	35355091	+	35354447	35355091	A5SS	ENSMUST00000166426.9	known	0.20	5	20	5	20	y	0.05	1	19	1	19	n	0.00	0	49	0	49	n	0.06	3	50	3	50	y	0.02	1	64	1	64	n	0.04	1	25	1	25	n	0.08	6	69	6	69	y	0.00	0	28	0	28	n	0.23	7	24	7	24	y	0.04	2	51	2	51	y	0.12	3	23	3	23	y	0.07	4	54	4	54	y	ENSMUSG00000024392.18	Bag6	chr17	protein_coding	BCL2-associated athanogene 6
known_NIR_8318	chr17	35354789	35355091	+	35354604	35355091	A5SS	ENSMUST00000173535.8	known	0.11	5	40	5	40	y	0.02	1	43	1	43	n	0.00	0	83	0	83	n	0.04	3	65	3	65	y	0.01	1	66	1	66	n	0.03	1	33	1	33	n	0.09	6	63	6	63	y	0.00	0	46	0	46	n	0.14	7	44	7	44	y	0.03	2	65	2	65	y	0.06	3	47	3	47	y	0.06	4	61	4	61	y	ENSMUSG00000024392.18	Bag6	chr17	protein_coding	BCL2-associated athanogene 6
known_NIR_8319	chr17	35354789	35355091	+	35354980	35355091	A5SS	ENSMUST00000174281.9	known	0.62	5	3	5	3	n	0.50	1	1	1	1	n	0.00	0	5	0	5	n	0.75	3	1	3	1	n	0.25	1	3	1	3	n	0.33	1	2	1	2	n	1.00	6	0	6	0	n	0.00	0	4	0	4	n	0.47	7	8	7	8	y	0.50	2	2	2	2	n	0.75	3	1	3	1	n	0.67	4	2	4	2	n	ENSMUSG00000024392.18	Bag6	chr17	protein_coding	BCL2-associated athanogene 6
known_NIR_8320	chr17	35354980	35355091	+	35354447	35355091	A5SS	ENSMUST00000166426.9	known	0.13	3	20	3	20	y	0.05	1	19	1	19	n	0.09	5	49	5	49	y	0.02	1	50	1	50	n	0.04	3	64	3	64	y	0.07	2	25	2	25	y	0.00	0	69	0	69	n	0.12	4	28	4	28	y	0.25	8	24	8	24	y	0.04	2	51	2	51	y	0.04	1	23	1	23	n	0.04	2	54	2	54	y	ENSMUSG00000024392.18	Bag6	chr17	protein_coding	BCL2-associated athanogene 6
known_NIR_8321	chr17	35354980	35355091	+	35354604	35355091	A5SS	ENSMUST00000173535.8	known	0.07	3	40	3	40	y	0.02	1	43	1	43	n	0.06	5	83	5	83	y	0.02	1	65	1	65	n	0.04	3	66	3	66	y	0.06	2	33	2	33	y	0.00	0	63	0	63	n	0.08	4	46	4	46	y	0.15	8	44	8	44	y	0.03	2	65	2	65	y	0.02	1	47	1	47	n	0.03	2	61	2	61	y	ENSMUSG00000024392.18	Bag6	chr17	protein_coding	BCL2-associated athanogene 6
known_NIR_8322	chr17	35357758;35358052	35357999;35358211	+	35357758	35358211	cassetteExon	ENSMUST00000166426.9	known	0.93	57.5	4	52;63	4	y	0.95	55.5	3	50;61	3	y	0.92	91.0	8	88;94	8	y	0.99	81.0	1	65;97	1	n	0.97	100.0	3	84;116	3	y	1.00	50.0	0	51;49	0	n	0.92	95.5	8	85;106	8	y	0.98	54.0	1	49;59	1	n	0.96	48.0	2	40;56	2	y	0.90	81.0	9	73;89	9	y	0.99	76.5	1	71;82	1	n	0.99	104.5	1	93;116	1	n	ENSMUSG00000024392.18	Bag6	chr17	protein_coding	BCL2-associated athanogene 6
known_NIR_8323	chr17	35361360	35361703	+	35361360	35361474	3pMXE	ENSMUST00000173535.8	known	0.68	58	27	58	27	y	0.66	58	30	58	30	y	0.40	36	54	36	54	y	0.73	65	24	65	24	y	0.51	59	57	59	57	y	0.43	30	40	30	40	y	0.61	72	47	72	47	y	0.47	36	40	36	40	y	0.62	51	31	51	31	y	0.68	85	40	85	40	y	0.76	57	18	57	18	y	0.67	67	33	67	33	y	ENSMUSG00000024392.18	Bag6	chr17	protein_coding	BCL2-associated athanogene 6
known_NIR_8324	chr17	35361360;35361581	35361474;35361703	+	35361360	35361703	cassetteExon	ENSMUST00000166426.9	known	0.37	34.5	58	27;42	58	y	0.33	28.5	58	30;27	58	y	0.61	56.0	36	54;58	36	y	0.28	25.5	65	24;27	65	y	0.51	62.0	59	57;67	59	y	0.59	44.0	30	40;48	30	y	0.43	55.0	72	47;63	72	y	0.54	42.5	36	40;45	36	y	0.34	26.5	51	31;22	51	y	0.36	47.0	85	40;54	85	y	0.30	25.0	57	18;32	57	y	0.34	35.0	67	33;37	67	y	ENSMUSG00000024392.18	Bag6	chr17	protein_coding	BCL2-associated athanogene 6
known_NIR_8325	chr17	35361815	35361902	+	35361815	35361899	A3SS	ENSMUST00000166426.9	known	0.55	46	38	46	38	y	0.49	57	59	57	59	y	0.49	65	68	65	68	y	0.54	56	48	56	48	y	0.59	86	60	86	60	y	0.42	30	41	30	41	y	0.57	72	55	72	55	y	0.56	43	34	43	34	y	0.51	41	40	41	40	y	0.49	74	77	74	77	y	0.54	53	45	53	45	y	0.63	62	36	62	36	y	ENSMUSG00000024392.18	Bag6	chr17	protein_coding	BCL2-associated athanogene 6
known_NIR_8326	chr17	35365145	35365243	+	35365145	35365222	A3SS	ENSMUST00000166426.9	known	0.02	4	184	4	184	y	0.04	8	203	8	203	y	0.02	4	171	4	171	y	0.01	2	149	2	149	y	0.02	6	235	6	235	y	0.02	2	88	2	88	y	0.05	12	233	12	233	y	0.02	2	106	2	106	y	0.01	2	141	2	141	y	0.03	7	215	7	215	y	0.04	8	208	8	208	y	0.03	7	196	7	196	y	ENSMUSG00000024392.18	Bag6	chr17	protein_coding	BCL2-associated athanogene 6
known_NIR_8327	chr17	35365329	35366117	+	35365329;35365879	35365733;35366117	ES	ENSMUST00000166426.9	known	0.40	74	113.0	74	125;101	y	0.38	61	100.5	61	120;81	y	0.42	75	101.5	75	97;106	y	0.33	43	87.0	43	104;70	y	0.34	60	118.5	60	137;100	y	0.40	45	67.0	45	75;59	y	0.36	74	132.0	74	172;92	y	0.32	30	62.5	30	61;64	y	0.33	42	86.5	42	112;61	y	0.33	65	129.5	65	162;97	y	0.33	69	137.0	69	152;122	y	0.33	63	125.5	63	146;105	y	ENSMUSG00000024392.18	Bag6	chr17	protein_coding	BCL2-associated athanogene 6
known_NIR_8328	chr17	35365329	35366117	+	35365879	35366117	5pMXE	ENSMUST00000172882.2	known	0.42	74	101	74	101	y	0.43	61	81	61	81	y	0.41	75	106	75	106	y	0.38	43	70	43	70	y	0.38	60	100	60	100	y	0.43	45	59	45	59	y	0.45	74	92	74	92	y	0.32	30	64	30	64	y	0.41	42	61	42	61	y	0.40	65	97	65	97	y	0.36	69	122	69	122	y	0.38	63	105	63	105	y	ENSMUSG00000024392.18	Bag6	chr17	protein_coding	BCL2-associated athanogene 6
known_NIR_8329	chr17	35369878	35371594	-	35369881	35371594	A3SS	ENSMUST00000025253.12	known	0.28	32	84	32	84	y	0.41	51	74	51	74	y	0.29	47	116	47	116	y	0.21	24	89	24	89	y	0.35	47	89	47	89	y	0.25	21	63	21	63	y	0.32	54	116	54	116	y	0.42	35	49	35	49	y	0.34	32	63	32	63	y	0.37	53	92	53	92	y	0.29	36	89	36	89	y	0.30	46	105	46	105	y	ENSMUSG00000024393.15	Prrc2a	chr17	protein_coding	proline-rich coiled-coil 2A
known_NIR_8330	chr17	3541012	3553156	+	3527553	3553156	A5SS	ENSMUST00000169838.9	known	0.00	0	3	0	3	n	0.40	2	3	2	3	n	1.00	12	0	12	0	n	0.39	7	11	7	11	y	0.78	7	2	7	2	n	1.00	6	0	6	0	n	0.35	7	13	7	13	y	0.71	5	2	5	2	n	0.00	0	13	0	13	n	0.36	9	16	9	16	y	0.31	5	11	5	11	y	0.12	4	29	4	29	y	ENSMUSG00000023800.16	Tiam2	chr17	protein_coding	T cell lymphoma invasion and metastasis 2
known_NIR_8331	chr17	35460828	35462223	+	35460828	35462089	A3SS	ENSMUST00000068056.12	known	0.08	6	68	6	68	y	0.06	4	59	4	59	y	0.05	5	98	5	98	y	0.07	6	76	6	76	y	0.09	8	80	8	80	y	0.04	3	69	3	69	y	0.05	3	62	3	62	y	0.13	9	62	9	62	y	0.05	3	58	3	58	y	0.06	6	95	6	95	y	0.11	8	66	8	66	y	0.00	0	88	0	88	n	ENSMUSG00000019432.16	Ddx39b	chr17	protein_coding	DEAD box helicase 39b
known_NIR_8332	chr17	35485279	35485443	+	35485279	35485458	A3SS	ENSMUST00000172785.8	known	0.05	93	1966	93	1966	y	0.04	93	1989	93	1989	y	0.05	132	2465	132	2465	y	0.04	71	1848	71	1848	y	0.05	125	2472	125	2472	y	0.05	72	1433	72	1433	y	0.04	104	2280	104	2280	y	0.03	44	1238	44	1238	y	0.03	47	1438	47	1438	y	0.05	108	2123	108	2123	y	0.04	55	1508	55	1508	y	0.05	89	1708	89	1708	y	ENSMUSG00000073411.13	H2-D1	chr17	protein_coding	histocompatibility 2, D region locus 1
known_NIR_8333	chr17	35659160;35661527	35661243;35661943	+	35659160	35661943	cassetteExon	ENSMUST00000116598.10	known	0.34	25.0	48	50;0	48	n	0.25	18.5	57	35;2	57	y	0.44	15.5	20	31;0	20	n	0.31	19.5	44	36;3	44	y	0.41	19.0	27	38;0	27	n	0.56	9.0	7	18;0	7	n	0.27	12.5	33	25;0	33	n	0.48	14.0	15	26;2	15	y	0.28	14.0	36	28;0	36	n	0.30	22.0	51	39;5	51	y	0.25	18.5	56	37;0	56	n	0.36	20.5	36	39;2	36	y	ENSMUSG00000060550.17	H2-Q7	chr17	protein_coding	histocompatibility 2, Q region locus 7
known_NIR_8334	chr17	35661527	35661943	+	35661527;35661770	35661654;35661943	ES	ENSMUST00000071951.14	known	0.00	0	30.5	0	28;33	n	0.08	2	22.0	2	27;17	y	0.00	0	26.5	0	35;18	n	0.10	3	26.0	3	36;16	y	0.00	0	28.0	0	29;27	n	0.00	0	13.0	0	16;10	n	0.00	0	32.0	0	35;29	n	0.15	2	11.5	2	18;5	y	0.00	0	30.0	0	30;30	n	0.09	5	48.0	5	54;42	y	0.00	0	21.5	0	17;26	n	0.06	2	29.0	2	25;33	y	ENSMUSG00000060550.17	H2-Q7	chr17	protein_coding	histocompatibility 2, Q region locus 7
known_NIR_8335	chr17	35661527	35661943	+	35661770	35661943	A5SS&ES	ENSMUST00000076256.8	known	0.00	0	33	0	33	n	0.11	2	17	2	17	y	0.00	0	18	0	18	n	0.16	3	16	3	16	y	0.00	0	27	0	27	n	0.00	0	10	0	10	n	0.00	0	29	0	29	n	0.29	2	5	2	5	n	0.00	0	30	0	30	n	0.11	5	42	5	42	y	0.00	0	26	0	26	n	0.06	2	33	2	33	y	ENSMUSG00000060550.17	H2-Q7	chr17	protein_coding	histocompatibility 2, Q region locus 7
known_NIR_8336	chr17	35661770	35661943	+	35659160	35661943	A5SS	ENSMUST00000116598.10	known	0.41	33	48	33	48	y	0.23	17	57	17	57	y	0.47	18	20	18	20	y	0.27	16	44	16	44	y	0.50	27	27	27	27	y	0.59	10	7	10	7	y	0.47	29	33	29	33	y	0.25	5	15	5	15	y	0.45	30	36	30	36	y	0.45	42	51	42	51	y	0.32	26	56	26	56	y	0.48	33	36	33	36	y	ENSMUSG00000060550.17	H2-Q7	chr17	protein_coding	histocompatibility 2, Q region locus 7
known_NIR_8337	chr17	35971019	35971296	-	35971019;35971176	35971106;35971296	ES	ENSMUST00000043674.15	known	0.00	0	31.0	0	34;28	n	0.05	2	39.5	2	40;39	y	0.04	1	27.5	1	26;29	n	0.12	3	21.5	3	18;25	y	0.00	0	29.5	0	32;27	n	0.00	0	24.5	0	21;28	n	0.00	0	40.5	0	33;48	n	0.00	0	21.5	0	22;21	n	0.00	0	39.0	0	35;43	n	0.03	1	35.0	1	36;34	n	0.00	0	58.5	0	61;56	n	0.00	0	52.5	0	48;57	n	ENSMUSG00000038838.16	Vars2	chr17	protein_coding	valyl-tRNA synthetase 2, mitochondrial
known_NIR_8338	chr17	35977817	35977958	-	35977817	35977965	A5SS	ENSMUST00000043674.15	known	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.13	2	13	2	13	y	0.12	2	15	2	15	y	0.03	1	34	1	34	n	0.00	0	12	0	12	n	0.00	0	19	0	19	n	0.11	2	16	2	16	y	0.00	0	14	0	14	n	0.12	4	28	4	28	y	0.00	0	30	0	30	n	0.00	0	12	0	12	n	ENSMUSG00000038838.16	Vars2	chr17	protein_coding	valyl-tRNA synthetase 2, mitochondrial
known_NIR_8339	chr17	35981854	35982122	-	35981854	35982118	A5SS	ENSMUST00000001565.15	known	0.10	3	27	3	27	y	0.04	1	24	1	24	n	0.11	4	31	4	31	y	0.04	1	25	1	25	n	0.04	2	44	2	44	y	0.00	0	22	0	22	n	0.03	1	33	1	33	n	0.00	0	25	0	25	n	0.04	1	23	1	23	n	0.00	0	45	0	45	n	0.00	0	28	0	28	n	0.19	5	22	5	22	y	ENSMUSG00000001524.15	Gtf2h4	chr17	protein_coding	general transcription factor II H, polypeptide 4
known_NIR_8340	chr17	35983720	35984407	-	35983720	35984448	A5SS	ENSMUST00000001565.15	known	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.12	3	23	3	23	y	0.04	1	25	1	25	n	0.00	0	6	0	6	n	0.00	0	27	0	27	n	0.07	1	13	1	13	n	0.00	0	12	0	12	n	0.00	0	17	0	17	n	0.00	0	26	0	26	n	0.05	1	18	1	18	n	ENSMUSG00000001524.15	Gtf2h4	chr17	protein_coding	general transcription factor II H, polypeptide 4
known_NIR_8341	chr17	35983720	35984426	-	35983720	35984448	A5SS	ENSMUST00000001565.15	known	0.08	1	12	1	12	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	23	0	23	n	0.07	2	25	2	25	y	0.00	0	6	0	6	n	0.04	1	27	1	27	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.00	0	17	0	17	n	0.04	1	26	1	26	n	0.00	0	18	0	18	n	ENSMUSG00000001524.15	Gtf2h4	chr17	protein_coding	general transcription factor II H, polypeptide 4
known_NIR_8342	chr17	3602613	3605207	-	3595966	3605207	A3SS	ENSMUST00000041003.8	known	0.00	0	31	0	31	n	0.00	0	24	0	24	n	0.00	0	46	0	46	n	0.00	0	31	0	31	n	0.05	2	42	2	42	y	0.00	0	45	0	45	n	0.00	0	41	0	41	n	0.00	0	32	0	32	n	0.00	0	21	0	21	n	0.00	0	38	0	38	n	0.04	1	26	1	26	n	0.00	0	28	0	28	n	ENSMUSG00000036983.8	Tfb1m	chr17	protein_coding	transcription factor B1, mitochondrial
known_NIR_8343	chr17	3605358	3607822	-	3605358	3607856	A5SS	ENSMUST00000041003.8	known	0.00	0	29	0	29	n	0.00	0	28	0	28	n	0.00	0	40	0	40	n	0.00	0	31	0	31	n	0.06	2	32	2	32	y	0.03	1	37	1	37	n	0.00	0	33	0	33	n	0.00	0	27	0	27	n	0.00	0	19	0	19	n	0.00	0	36	0	36	n	0.00	0	19	0	19	n	0.00	0	33	0	33	n	ENSMUSG00000036983.8	Tfb1m	chr17	protein_coding	transcription factor B1, mitochondrial
known_NIR_8344	chr17	36134487	36134699	+	36134393	36134699	A5SS	ENSMUST00000001569.15	known	0.03	2	71	2	71	y	0.02	2	84	2	84	y	0.02	5	260	5	260	y	0.02	2	83	2	83	y	0.04	7	160	7	160	y	0.05	5	91	5	91	y	0.01	1	137	1	137	n	0.05	3	56	3	56	y	0.07	3	43	3	43	y	0.01	1	98	1	98	n	0.00	0	52	0	52	n	0.02	2	86	2	86	y	ENSMUSG00000059714.14	Flot1	chr17	protein_coding	flotillin 1
known_NIR_8345	chr17	36134522	36134699	+	36134393	36134699	A5SS	ENSMUST00000001569.15	known	0.01	1	71	1	71	n	0.00	0	84	0	84	n	0.00	0	260	0	260	n	0.00	0	83	0	83	n	0.01	1	160	1	160	n	0.00	0	91	0	91	n	0.01	2	137	2	137	y	0.00	0	56	0	56	n	0.00	0	43	0	43	n	0.00	0	98	0	98	n	0.00	0	52	0	52	n	0.00	0	86	0	86	n	ENSMUSG00000059714.14	Flot1	chr17	protein_coding	flotillin 1
known_NIR_8346	chr17	36135094	36135458	+	36135094;36135261	36135171;36135458	ES	ENSMUST00000001569.15	known	0.01	1	109.5	1	94;125	n	0.01	1	142.5	1	130;155	n	0.04	17	364.5	17	334;395	y	0.00	0	119.0	0	91;147	n	0.04	6	156.5	6	141;172	y	0.03	4	119.5	4	112;127	y	0.02	4	189.5	4	183;196	y	0.04	4	95.5	4	83;108	y	0.03	2	55.5	2	43;68	y	0.03	4	114.5	4	105;124	y	0.01	1	74.5	1	64;85	n	0.02	2	123.5	2	116;131	y	ENSMUSG00000059714.14	Flot1	chr17	protein_coding	flotillin 1
known_NIR_8347	chr17	36197134	36198316	+	36197134	36198291	A3SS	ENSMUST00000025292.15	known	0.01	1	74	1	74	n	0.05	3	54	3	54	y	0.03	2	72	2	72	y	0.02	1	60	1	60	n	0.07	7	95	7	95	y	0.04	2	47	2	47	y	0.00	0	79	0	79	n	0.04	1	26	1	26	n	0.05	2	36	2	36	y	0.00	0	67	0	67	n	0.03	2	68	2	68	y	0.04	3	70	3	70	y	ENSMUSG00000024422.15	Dhx16	chr17	protein_coding	DEAH (Asp-Glu-Ala-His) box polypeptide 16
known_NIR_8348	chr17	36200492	36203311	+	36200492;36201980	36201807;36203311	ES	ENSMUST00000025292.15	known	0.00	0	115.0	0	110;120	n	0.01	1	130.5	1	122;139	n	0.00	0	96.0	0	96;96	n	0.02	2	93.5	2	100;87	y	0.03	5	148.0	5	177;119	y	0.02	1	55.5	1	61;50	n	0.01	1	137.0	1	139;135	n	0.00	0	57.0	0	63;51	n	0.00	0	98.0	0	88;108	n	0.00	0	144.5	0	135;154	n	0.02	3	125.5	3	103;148	y	0.00	0	124.0	0	117;131	n	ENSMUSG00000024422.15	Dhx16	chr17	protein_coding	DEAH (Asp-Glu-Ala-His) box polypeptide 16
known_NIR_8349	chr17	36200492	36203311	+	36201980	36203311	5pMXE	ENSMUST00000174308.2	known	0.00	0	120	0	120	n	0.01	1	139	1	139	n	0.00	0	96	0	96	n	0.02	2	87	2	87	y	0.04	5	119	5	119	y	0.02	1	50	1	50	n	0.01	1	135	1	135	n	0.00	0	51	0	51	n	0.00	0	108	0	108	n	0.00	0	154	0	154	n	0.02	3	148	3	148	y	0.00	0	131	0	131	n	ENSMUSG00000024422.15	Dhx16	chr17	protein_coding	DEAH (Asp-Glu-Ala-His) box polypeptide 16
known_NIR_8350	chr17	36203881	36203932	-	36203858	36203932	A3SS	ENSMUST00000148482.8	known	0.03	3	90	3	90	y	0.03	4	117	4	117	y	0.08	7	78	7	78	y	0.04	5	111	5	111	y	0.02	2	118	2	118	y	0.00	0	38	0	38	n	0.02	3	149	3	149	y	0.00	0	36	0	36	n	0.00	0	102	0	102	n	0.02	3	158	3	158	y	0.00	0	135	0	135	n	0.03	5	143	5	143	y	ENSMUSG00000050705.16	2310061I04Rik	chr17	protein_coding	RIKEN cDNA 2310061I04 gene
known_NIR_8351	chr17	36206964	36207937	-	36206964	36207872	A5SS	ENSMUST00000148482.8	known	0.60	3	2	3	2	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.42	5	7	5	7	y	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.12	1	7	1	7	n	0.00	0	3	0	3	n	0.57	4	3	4	3	n	ENSMUSG00000050705.16	2310061I04Rik	chr17	protein_coding	RIKEN cDNA 2310061I04 gene
known_NIR_8352	chr17	36206964	36207937	-	36206964	36208083	A5SS	ENSMUST00000148721.8	known	0.08	3	35	3	35	y	0.00	0	30	0	30	n	0.00	0	26	0	26	n	0.03	1	32	1	32	n	0.00	0	34	0	34	n	0.00	0	12	0	12	n	0.11	5	41	5	41	y	0.00	0	28	0	28	n	0.00	0	30	0	30	n	0.02	1	42	1	42	n	0.00	0	37	0	37	n	0.07	4	55	4	55	y	ENSMUSG00000050705.16	2310061I04Rik	chr17	protein_coding	RIKEN cDNA 2310061I04 gene
known_NIR_8353	chr17	36206964	36208083	-	36206964	36207872	5pMXE	ENSMUST00000148482.8	known	0.95	35	2	35	2	y	0.88	30	4	30	4	y	0.87	26	4	26	4	y	0.89	32	4	32	4	y	0.79	34	9	34	9	y	0.75	12	4	12	4	y	0.85	41	7	41	7	y	0.85	28	5	28	5	y	0.81	30	7	30	7	y	0.86	42	7	42	7	y	0.93	37	3	37	3	y	0.95	55	3	55	3	y	ENSMUSG00000050705.16	2310061I04Rik	chr17	protein_coding	RIKEN cDNA 2310061I04 gene
known_NIR_8354	chr17	36206964	36208083	-	36207337	36208083	3pMXE	ENSMUST00000154272.2	known	1.00	35	0	35	0	n	1.00	30	0	30	0	n	0.90	26	3	26	3	y	1.00	32	0	32	0	n	1.00	34	0	34	0	n	1.00	12	0	12	0	n	1.00	41	0	41	0	n	0.97	28	1	28	1	n	1.00	30	0	30	0	n	1.00	42	0	42	0	n	1.00	37	0	37	0	n	1.00	55	0	55	0	n	ENSMUSG00000050705.16	2310061I04Rik	chr17	protein_coding	RIKEN cDNA 2310061I04 gene
known_NIR_8355	chr17	36209242	36212260	-	36209359	36212260	A3SS&ES	ENSMUST00000061052.12	known	0.00	0	14	0	14	n	0.11	2	17	2	17	y	0.12	2	14	2	14	y	0.32	9	19	9	19	y	0.33	6	12	6	12	y	0.00	0	4	0	4	n	0.19	6	25	6	25	y	0.25	3	9	3	9	y	0.07	1	13	1	13	n	0.20	3	12	3	12	y	0.15	4	22	4	22	y	0.12	3	21	3	21	y	ENSMUSG00000024426.18	Atat1	chr17	protein_coding	alpha tubulin acetyltransferase 1
known_NIR_8356	chr17	36211764	36212260	-	36209242	36212260	A3SS	ENSMUST00000149277.8	known	1.00	3	0	3	0	n	0.71	5	2	5	2	n	0.78	7	2	7	2	n	0.25	3	9	3	9	y	0.33	3	6	3	6	n	-	-	-	-	-	-	0.45	5	6	5	6	y	0.40	2	3	2	3	n	0.75	3	1	3	1	n	0.62	5	3	5	3	n	0.33	2	4	2	4	n	0.67	6	3	6	3	n	ENSMUSG00000024426.18	Atat1	chr17	protein_coding	alpha tubulin acetyltransferase 1
known_NIR_8357	chr17	36211764	36212260	-	36209359	36212260	A3SS	ENSMUST00000061052.12	known	0.18	3	14	3	14	y	0.23	5	17	5	17	y	0.33	7	14	7	14	y	0.14	3	19	3	19	y	0.20	3	12	3	12	y	0.00	0	4	0	4	n	0.17	5	25	5	25	y	0.18	2	9	2	9	y	0.19	3	13	3	13	y	0.29	5	12	5	12	y	0.08	2	22	2	22	y	0.22	6	21	6	21	y	ENSMUSG00000024426.18	Atat1	chr17	protein_coding	alpha tubulin acetyltransferase 1
known_NIR_8358	chr17	36212946	36215182	-	36212946;36215068	36215000;36215182	ES	ENSMUST00000061052.12	known	0.43	11	14.5	11	15;14	y	0.62	16	10.0	16	7;13	y	0.42	5	7.0	5	5;9	y	0.32	13	28.0	13	27;29	y	0.33	13	26.0	13	22;30	y	0.22	2	7.0	2	6;8	y	0.40	13	19.5	13	17;22	y	0.37	8	13.5	8	12;15	y	0.57	19	14.5	19	11;18	y	0.42	19	26.5	19	29;24	y	0.50	12	12.0	12	10;14	y	0.61	24	15.5	24	12;19	y	ENSMUSG00000024426.18	Atat1	chr17	protein_coding	alpha tubulin acetyltransferase 1
known_NIR_8359	chr17	36212946	36215182	-	36215068	36215182	3pMXE	ENSMUST00000140990.8	known	0.44	11	14	11	14	y	0.55	16	13	16	13	y	0.36	5	9	5	9	y	0.31	13	29	13	29	y	0.30	13	30	13	30	y	0.20	2	8	2	8	y	0.37	13	22	13	22	y	0.35	8	15	8	15	y	0.51	19	18	19	18	y	0.44	19	24	19	24	y	0.46	12	14	12	14	y	0.56	24	19	24	19	y	ENSMUSG00000024426.18	Atat1	chr17	protein_coding	alpha tubulin acetyltransferase 1
known_NIR_8360	chr17	36212946;36213330	36213248;36215000	-	36212946	36215000	cassetteExon	ENSMUST00000061052.12	known	0.23	4.5	15	4;5	15	y	0.46	6.0	7	7;5	7	y	0.71	12.0	5	16;8	5	y	0.21	7.0	27	9;5	27	y	0.38	13.5	22	17;10	22	y	0.20	1.5	6	2;1	6	n	0.33	8.5	17	11;6	17	y	0.44	9.5	12	9;10	12	y	0.44	8.5	11	11;6	11	y	0.29	12.0	29	13;11	29	y	0.43	7.5	10	8;7	10	y	0.38	7.5	12	10;5	12	y	ENSMUSG00000024426.18	Atat1	chr17	protein_coding	alpha tubulin acetyltransferase 1
known_NIR_8361	chr17	36212946;36213330	36213248;36215182	-	36212946	36215182	cassetteExon	ENSMUST00000077494.13	known	0.24	3.5	11	4;3	11	y	0.26	5.5	16	7;4	16	y	0.74	14.5	5	16;13	5	y	0.33	6.5	13	9;4	13	y	0.43	10.0	13	17;3	13	y	0.43	1.5	2	2;1	2	n	0.41	9.0	13	11;7	13	y	0.47	7.0	8	9;5	8	y	0.33	9.5	19	11;8	19	y	0.32	9.0	19	13;5	19	y	0.37	7.0	12	8;6	12	y	0.27	9.0	24	10;8	24	y	ENSMUSG00000024426.18	Atat1	chr17	protein_coding	alpha tubulin acetyltransferase 1
known_NIR_8362	chr17	36212946;36213330	36213248;36215182	-	36212946;36215068	36215000;36215182	MXE	ENSMUST00000061052.12	known	0.19	3.5	14.5	4;3	15;14	y	0.35	5.5	10.0	7;4	7;13	y	0.67	14.5	7.0	16;13	5;9	y	0.19	6.5	28.0	9;4	27;29	y	0.28	10.0	26.0	17;3	22;30	y	0.18	1.5	7.0	2;1	6;8	n	0.32	9.0	19.5	11;7	17;22	y	0.34	7.0	13.5	9;5	12;15	y	0.40	9.5	14.5	11;8	11;18	y	0.25	9.0	26.5	13;5	29;24	y	0.37	7.0	12.0	8;6	10;14	y	0.37	9.0	15.5	10;8	12;19	y	ENSMUSG00000024426.18	Atat1	chr17	protein_coding	alpha tubulin acetyltransferase 1
known_NIR_8363	chr17	36213330	36215182	-	36213330;36215068	36215000;36215182	ES	ENSMUST00000126744.8	known	0.24	3	9.5	3	5;14	y	0.31	4	9.0	4	5;13	y	0.60	13	8.5	13	8;9	y	0.19	4	17.0	4	5;29	y	0.13	3	20.0	3	10;30	y	0.18	1	4.5	1	1;8	n	0.33	7	14.0	7	6;22	y	0.29	5	12.5	5	10;15	y	0.40	8	12.0	8	6;18	y	0.22	5	17.5	5	11;24	y	0.36	6	10.5	6	7;14	y	0.40	8	12.0	8	5;19	y	ENSMUSG00000024426.18	Atat1	chr17	protein_coding	alpha tubulin acetyltransferase 1
known_NIR_8364	chr17	36213330	36215182	-	36215068	36215182	3pMXE	ENSMUST00000140990.8	known	0.18	3	14	3	14	y	0.24	4	13	4	13	y	0.59	13	9	13	9	y	0.12	4	29	4	29	y	0.09	3	30	3	30	y	0.11	1	8	1	8	n	0.24	7	22	7	22	y	0.25	5	15	5	15	y	0.31	8	18	8	18	y	0.17	5	24	5	24	y	0.30	6	14	6	14	y	0.30	8	19	8	19	y	ENSMUSG00000024426.18	Atat1	chr17	protein_coding	alpha tubulin acetyltransferase 1
known_NIR_8365	chr17	36219147	36219455	-	36215227	36219455	A3SS	ENSMUST00000061052.12	known	0.00	0	24	0	24	n	0.04	1	25	1	25	n	0.00	0	25	0	25	n	0.00	0	56	0	56	n	0.03	1	32	1	32	n	0.00	0	14	0	14	n	0.06	3	46	3	46	y	0.00	0	23	0	23	n	0.00	0	36	0	36	n	0.00	0	38	0	38	n	0.00	0	23	0	23	n	0.00	0	44	0	44	n	ENSMUSG00000024426.18	Atat1	chr17	protein_coding	alpha tubulin acetyltransferase 1
known_NIR_8366	chr17	36220383	36220526	-	36220383	36220821	A5SS	ENSMUST00000061052.12	known	0.50	8	8	8	8	y	0.45	5	6	5	6	y	0.32	7	15	7	15	y	0.33	5	10	5	10	y	0.26	8	23	8	23	y	0.22	2	7	2	7	n	0.44	11	14	11	14	y	0.29	2	5	2	5	n	0.47	8	9	8	9	y	0.43	10	13	10	13	y	0.38	8	13	8	13	y	0.35	9	17	9	17	y	ENSMUSG00000024426.18	Atat1	chr17	protein_coding	alpha tubulin acetyltransferase 1
known_NIR_8367	chr17	36221743	36223230	-	36222370	36223230	A3SS&ES	ENSMUST00000025305.16	known	0.04	10	219	10	219	y	0.00	0	255	0	255	n	0.01	3	320	3	320	y	0.00	0	228	0	228	n	0.00	0	231	0	231	n	0.00	0	190	0	190	n	0.00	0	261	0	261	n	0.00	0	122	0	122	n	0.00	0	189	0	189	n	0.00	0	271	0	271	n	0.00	0	243	0	243	n	0.03	6	229	6	229	y	ENSMUSG00000024436.17	Mrps18b	chr17	protein_coding	mitochondrial ribosomal protein S18B
known_NIR_8368	chr17	36222370	36225226	-	36222370	36223230	5pMXE	ENSMUST00000173737.2	known	0.01	3	219	3	219	y	0.02	4	255	4	255	y	0.01	3	320	3	320	y	0.01	3	228	3	228	y	0.01	2	231	2	231	y	0.02	3	190	3	190	y	0.03	9	261	9	261	y	0.02	3	122	3	122	y	0.00	0	189	0	189	n	0.00	1	271	1	271	n	0.04	9	243	9	243	y	0.01	3	229	3	229	y	ENSMUSG00000024436.17	Mrps18b	chr17	protein_coding	mitochondrial ribosomal protein S18B
known_NIR_8369	chr17	36222370	36225226	-	36222370;36223296	36223230;36225226	ES	ENSMUST00000025305.16	known	0.01	3	230.5	3	219;242	y	0.02	4	260.5	4	255;266	y	0.01	3	315.0	3	320;310	y	0.01	3	218.0	3	228;208	y	0.01	2	226.0	2	231;221	y	0.02	3	167.0	3	190;144	y	0.04	9	229.5	9	261;198	y	0.02	3	132.0	3	122;142	y	0.00	0	195.0	0	189;201	n	0.00	1	256.0	1	271;241	n	0.04	9	242.5	9	243;242	y	0.01	3	232.0	3	229;235	y	ENSMUSG00000024436.17	Mrps18b	chr17	protein_coding	mitochondrial ribosomal protein S18B
known_NIR_8370	chr17	36222370	36225226	-	36223296	36225226	A3SS&ES	ENSMUST00000174807.8	known	0.01	3	242	3	242	y	0.01	4	266	4	266	y	0.01	3	310	3	310	y	0.01	3	208	3	208	y	0.01	2	221	2	221	y	0.02	3	144	3	144	y	0.04	9	198	9	198	y	0.02	3	142	3	142	y	0.00	0	201	0	201	n	0.00	1	241	1	241	n	0.04	9	242	9	242	y	0.01	3	235	3	235	y	ENSMUSG00000024436.17	Mrps18b	chr17	protein_coding	mitochondrial ribosomal protein S18B
known_NIR_8371	chr17	36222370;36225696	36225226;36227184	-	36222370;36223296	36223230;36227184	MXE	ENSMUST00000113782.10	known	0.43	81.5	110.0	3;160	219;1	n	0.35	71.5	131.0	4;139	255;7	y	0.47	140.5	160.5	3;278	320;1	n	0.42	84.0	114.5	3;165	228;1	n	0.47	101.5	115.5	2;201	231;0	n	0.43	72.5	95.0	3;142	190;0	n	0.44	104.0	133.5	9;199	261;6	y	0.53	71.0	63.0	3;139	122;4	y	0.47	83.5	95.5	0;167	189;2	n	0.38	86.0	139.0	1;171	271;7	n	0.47	110.5	122.5	9;212	243;2	y	0.43	85.5	115.0	3;168	229;1	n	ENSMUSG00000024436.17	Mrps18b	chr17	protein_coding	mitochondrial ribosomal protein S18B
known_NIR_8372	chr17	36223296;36225696	36225226;36227184	-	36223296	36227184	cassetteExon	ENSMUST00000113782.10	known	1.00	201.0	1	242;160	1	n	0.97	202.5	7	266;139	7	y	1.00	294.0	1	310;278	1	n	0.99	186.5	1	208;165	1	n	1.00	211.0	0	221;201	0	n	1.00	143.0	0	144;142	0	n	0.97	198.5	6	198;199	6	y	0.97	140.5	4	142;139	4	y	0.99	184.0	2	201;167	2	y	0.97	206.0	7	241;171	7	y	0.99	227.0	2	242;212	2	y	1.00	201.5	1	235;168	1	n	ENSMUSG00000024436.17	Mrps18b	chr17	protein_coding	mitochondrial ribosomal protein S18B
known_NIR_8373	chr17	36225696	36226793	-	36225696	36227184	A5SS	ENSMUST00000025305.16	known	0.01	1	160	1	160	n	0.00	0	139	0	139	n	0.00	0	278	0	278	n	0.00	0	165	0	165	n	0.00	0	201	0	201	n	0.01	2	142	2	142	y	0.01	1	199	1	199	n	0.00	0	139	0	139	n	0.01	1	167	1	167	n	0.00	0	171	0	171	n	0.00	0	212	0	212	n	0.00	0	168	0	168	n	ENSMUSG00000024436.17	Mrps18b	chr17	protein_coding	mitochondrial ribosomal protein S18B
known_NIR_8374	chr17	36227897	36228090	+	36227490	36228090	A5SS	ENSMUST00000154856.2	known	1.00	7	0	7	0	n	1.00	3	0	3	0	n	0.90	9	1	9	1	n	-	-	-	-	-	-	0.80	8	2	8	2	y	1.00	6	0	6	0	n	1.00	6	0	6	0	n	0.00	0	2	0	2	n	1.00	3	0	3	0	n	0.87	13	2	13	2	y	-	-	-	-	-	-	0.90	9	1	9	1	n	ENSMUSG00000039220.17	Ppp1r10	chr17	protein_coding	protein phosphatase 1, regulatory subunit 10
known_NIR_8375	chr17	36276015;36280125	36279860;36280538	-	36276015	36280538	cassetteExon	ENSMUST00000043757.15	known	0.00	0.0	82	0;0	82	n	0.03	2.0	62	1;3	62	n	0.02	3.5	143	4;3	143	y	0.03	3.0	90	1;5	90	n	0.02	2.5	119	1;4	119	n	0.03	1.0	35	0;2	35	n	0.03	3.5	102	4;3	102	y	0.02	1.0	58	0;2	58	n	0.00	0.0	66	0;0	66	n	0.01	1.5	114	0;3	114	n	0.02	1.0	61	2;0	61	n	0.03	2.0	70	4;0	70	n	ENSMUSG00000038762.16	Abcf1	chr17	protein_coding	ATP-binding cassette, sub-family F (GCN20), member 1
known_NIR_8376	chr17	36289335	36290019	-	36289335	36289603	5pMXE	ENSMUST00000172429.8	known	0.71	10	4	10	4	y	0.20	1	4	1	4	n	0.33	4	8	4	8	y	0.27	3	8	3	8	y	0.83	5	1	5	1	n	0.75	3	1	3	1	n	0.36	4	7	4	7	y	0.78	7	2	7	2	n	0.50	3	3	3	3	n	0.76	13	4	13	4	y	0.67	6	3	6	3	n	0.57	4	3	4	3	n	ENSMUSG00000038500.16	Prr3	chr17	protein_coding	proline-rich polypeptide 3
known_NIR_8377	chr17	36289335	36290019	-	36289673	36290019	3pMXE	ENSMUST00000173417.2	known	0.91	10	1	10	1	n	0.20	1	4	1	4	n	0.33	4	8	4	8	y	0.43	3	4	3	4	n	0.45	5	6	5	6	y	1.00	3	0	3	0	n	0.36	4	7	4	7	y	0.64	7	4	7	4	y	0.60	3	2	3	2	n	0.76	13	4	13	4	y	0.75	6	2	6	2	n	0.44	4	5	4	5	n	ENSMUSG00000038500.16	Prr3	chr17	protein_coding	proline-rich polypeptide 3
known_NIR_8378	chr17	36289335;36289673	36289603;36290019	-	36289335	36290019	cassetteExon	ENSMUST00000055454.14	known	0.20	2.5	10	4;1	10	n	0.80	4.0	1	4;4	1	n	0.67	8.0	4	8;8	4	y	0.67	6.0	3	8;4	3	y	0.41	3.5	5	1;6	5	n	0.14	0.5	3	1;0	3	n	0.64	7.0	4	7;7	4	y	0.30	3.0	7	2;4	7	y	0.45	2.5	3	3;2	3	n	0.24	4.0	13	4;4	13	y	0.29	2.5	6	3;2	6	y	0.50	4.0	4	3;5	4	y	ENSMUSG00000038500.16	Prr3	chr17	protein_coding	proline-rich polypeptide 3
known_NIR_8379	chr17	36350266;36351221	36351117;36351370	-	36350266	36351370	cassetteExon	ENSMUST00000172633.8	known	0.97	370.5	10	340;401	10	y	0.98	384.0	8	333;435	8	y	0.94	268.0	16	232;304	16	y	0.99	369.5	5	368;371	5	y	0.95	385.5	21	345;426	21	y	0.97	158.5	5	144;173	5	y	0.99	396.5	2	384;409	2	y	0.97	181.5	6	173;190	6	y	0.98	327.5	7	308;347	7	y	0.99	497.0	6	442;552	6	y	0.97	405.5	12	352;459	12	y	0.99	366.5	4	344;389	4	y	ENSMUSG00000056116.19	H2-T22	chr17	protein_coding	histocompatibility 2, T region locus 22
known_NIR_8380	chr17	36353004	36353234	-	36353020	36353234	A3SS	ENSMUST00000172633.8	known	0.03	7	234	7	234	y	0.01	3	205	3	205	y	0.01	2	136	2	136	y	0.03	7	225	7	225	y	0.04	11	246	11	246	y	0.02	3	130	3	130	y	0.00	0	230	0	230	n	0.03	4	131	4	131	y	0.00	0	138	0	138	n	0.04	10	273	10	273	y	0.02	4	190	4	190	y	0.03	6	232	6	232	y	ENSMUSG00000056116.19	H2-T22	chr17	protein_coding	histocompatibility 2, T region locus 22
known_NIR_8381	chr17	36566961	36568305	-	36566961	36568334	A5SS	ENSMUST00000077535.5	known	0.02	2	83	2	83	y	0.03	2	73	2	73	y	0.00	0	39	0	39	n	0.00	0	73	0	73	n	0.00	0	101	0	101	n	0.00	0	37	0	37	n	0.00	0	94	0	94	n	0.02	1	43	1	43	n	0.00	0	52	0	52	n	0.00	0	130	0	130	n	0.02	2	82	2	82	y	0.01	1	98	1	98	n	ENSMUSG00000024446.14	Rpp21	chr17	protein_coding	ribonuclease P 21 subunit
known_NIR_8382	chr17	36568416	36568675	-	36568416	36568498	A5SS	ENSMUST00000173486.8	known	0.03	3	93	3	93	y	0.13	13	87	13	87	y	0.02	1	41	1	41	n	0.07	5	62	5	62	y	0.07	6	85	6	85	y	0.00	0	27	0	27	n	0.02	2	102	2	102	y	0.03	1	31	1	31	n	0.06	4	67	4	67	y	0.01	2	138	2	138	y	0.04	3	77	3	77	y	0.09	9	87	9	87	y	ENSMUSG00000024446.14	Rpp21	chr17	protein_coding	ribonuclease P 21 subunit
known_NIR_8383	chr17	36568416	36568675	-	36568598	36568675	A3SS	ENSMUST00000174824.2	known	0.05	3	61	3	61	y	0.25	13	38	13	38	y	0.04	1	22	1	22	n	0.13	5	34	5	34	y	0.12	6	42	6	42	y	0.00	0	25	0	25	n	0.04	2	43	2	43	y	0.05	1	19	1	19	n	0.09	4	41	4	41	y	0.03	2	78	2	78	y	0.07	3	42	3	42	y	0.15	9	51	9	51	y	ENSMUSG00000024446.14	Rpp21	chr17	protein_coding	ribonuclease P 21 subunit
known_NIR_8384	chr17	36568416;36568598	36568498;36568675	-	36568416	36568675	cassetteExon	ENSMUST00000077535.5	known	0.96	77.0	3	93;61	3	y	0.83	62.5	13	87;38	13	y	0.97	31.5	1	41;22	1	n	0.91	48.0	5	62;34	5	y	0.91	63.5	6	85;42	6	y	1.00	26.0	0	27;25	0	n	0.97	72.5	2	102;43	2	y	0.96	25.0	1	31;19	1	n	0.93	54.0	4	67;41	4	y	0.98	108.0	2	138;78	2	y	0.95	59.5	3	77;42	3	y	0.88	69.0	9	87;51	9	y	ENSMUSG00000024446.14	Rpp21	chr17	protein_coding	ribonuclease P 21 subunit
known_NIR_8385	chr17	36571813	36572383	-	36571837	36572383	A3SS	ENSMUST00000173665.8	known	1.00	21	0	21	0	n	1.00	29	0	29	0	n	0.89	55	7	55	7	y	1.00	22	0	22	0	n	0.97	35	1	35	1	n	1.00	32	0	32	0	n	1.00	24	0	24	0	n	1.00	20	0	20	0	n	1.00	11	0	11	0	n	0.92	22	2	22	2	y	1.00	14	0	14	0	n	1.00	27	0	27	0	n	ENSMUSG00000045409.17	Trim39	chr17	protein_coding	tripartite motif-containing 39
known_NIR_8386	chr17	36574129	36574621	-	36573024	36574621	A3SS	ENSMUST00000173665.8	known	0.16	5	26	5	26	y	0.26	9	25	9	25	y	0.25	21	64	21	64	y	0.29	7	17	7	17	y	0.05	2	42	2	42	y	0.25	7	21	7	21	y	0.31	9	20	9	20	y	0.16	6	31	6	31	y	0.17	4	19	4	19	y	0.20	5	20	5	20	y	0.15	4	23	4	23	y	0.12	4	30	4	30	y	ENSMUSG00000045409.17	Trim39	chr17	protein_coding	tripartite motif-containing 39
known_NIR_8387	chr17	37148156	37148389	+	37148156	37148357	A3SS	ENSMUST00000124307.2	known	0.66	23	12	23	12	y	0.35	8	15	8	15	y	0.37	11	19	11	19	y	0.47	20	23	20	23	y	0.34	18	35	18	35	y	0.58	14	10	14	10	y	0.48	15	16	15	16	y	0.52	13	12	13	12	y	0.43	13	17	13	17	y	0.47	21	24	21	24	y	0.50	20	20	20	20	y	0.35	19	36	19	36	y	ENSMUSG00000024457.17	Trim26	chr17	protein_coding	tripartite motif-containing 26
known_NIR_8388	chr17	37148156	37161548	+	37148156	37148357	3pMXE	ENSMUST00000124307.2	known	0.00	0	12	0	12	n	0.12	2	15	2	15	y	0.10	2	19	2	19	y	0.04	1	23	1	23	n	0.03	1	35	1	35	n	0.09	1	10	1	10	n	0.00	0	16	0	16	n	0.00	0	12	0	12	n	0.11	2	17	2	17	y	0.00	0	24	0	24	n	0.00	0	20	0	20	n	0.00	0	36	0	36	n	ENSMUSG00000024457.17	Trim26	chr17	protein_coding	tripartite motif-containing 26
known_NIR_8389	chr17	37148156	37161548	+	37148156;37148464	37148357;37161548	ES	ENSMUST00000179968.8	known	0.00	0	26.5	0	12;41	n	0.09	2	21.0	2	15;27	y	0.06	2	31.5	2	19;44	y	0.03	1	35.0	1	23;47	n	0.02	1	49.5	1	35;64	n	0.05	1	17.5	1	10;25	n	0.00	0	26.0	0	16;36	n	0.00	0	21.0	0	12;30	n	0.07	2	25.5	2	17;34	y	0.00	0	45.0	0	24;66	n	0.00	0	28.5	0	20;37	n	0.00	0	33.5	0	36;31	n	ENSMUSG00000024457.17	Trim26	chr17	protein_coding	tripartite motif-containing 26
known_NIR_8390	chr17	37148156	37161548	+	37148156;37148464	37148389;37161548	ES	ENSMUST00000134325.8	known	0.00	0	32.0	0	23;41	n	0.10	2	17.5	2	8;27	y	0.07	2	27.5	2	11;44	y	0.03	1	33.5	1	20;47	n	0.02	1	41.0	1	18;64	n	0.05	1	19.5	1	14;25	n	0.00	0	25.5	0	15;36	n	0.00	0	21.5	0	13;30	n	0.08	2	23.5	2	13;34	y	0.00	0	43.5	0	21;66	n	0.00	0	28.5	0	20;37	n	0.00	0	25.0	0	19;31	n	ENSMUSG00000024457.17	Trim26	chr17	protein_coding	tripartite motif-containing 26
known_NIR_8391	chr17	37148156	37161548	+	37148464	37161548	A5SS&ES	ENSMUST00000144182.8	known	0.00	0	41	0	41	n	0.07	2	27	2	27	y	0.04	2	44	2	44	y	0.02	1	47	1	47	n	0.02	1	64	1	64	n	0.04	1	25	1	25	n	0.00	0	36	0	36	n	0.00	0	30	0	30	n	0.06	2	34	2	34	y	0.00	0	66	0	66	n	0.00	0	37	0	37	n	0.00	0	31	0	31	n	ENSMUSG00000024457.17	Trim26	chr17	protein_coding	tripartite motif-containing 26
known_NIR_8392	chr17	37148175	37148357	+	37148156	37148357	A5SS	ENSMUST00000124307.2	known	0.20	3	12	3	12	y	0.00	0	15	0	15	n	0.17	4	19	4	19	y	0.00	0	23	0	23	n	0.00	0	35	0	35	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.14	2	12	2	12	y	0.00	0	17	0	17	n	0.00	0	24	0	24	n	0.00	0	20	0	20	n	0.00	0	36	0	36	n	ENSMUSG00000024457.17	Trim26	chr17	protein_coding	tripartite motif-containing 26
known_NIR_8393	chr17	37163585	37167094	+	37163585;37165193	37165176;37167094	ES	ENSMUST00000130367.8	known	0.84	41	8.0	41	9;7	y	0.79	24	6.5	24	9;4	y	0.84	31	6.0	31	6;6	y	0.77	48	14.5	48	17;12	y	0.68	51	23.5	51	28;19	y	0.81	13	3.0	13	3;3	y	0.54	34	29.5	34	31;28	y	0.66	19	10.0	19	9;11	y	0.70	33	14.0	33	16;12	y	0.75	55	18.5	55	20;17	y	0.71	39	16.0	39	16;16	y	0.67	33	16.0	33	19;13	y	ENSMUSG00000024457.17	Trim26	chr17	protein_coding	tripartite motif-containing 26
known_NIR_8394	chr17	37167913	37170031	+	37167913	37168292	A3SS	ENSMUST00000179968.8	known	0.07	3	38	3	38	y	0.07	3	37	3	37	y	0.00	0	47	0	47	n	0.04	2	45	2	45	y	0.00	0	60	0	60	n	0.00	0	26	0	26	n	0.00	0	56	0	56	n	0.00	0	27	0	27	n	0.00	0	42	0	42	n	0.03	2	69	2	69	y	0.00	0	45	0	45	n	0.00	0	48	0	48	n	ENSMUSG00000024457.17	Trim26	chr17	protein_coding	tripartite motif-containing 26
known_NIR_8395	chr17	37269121	37269270	-	37269188	37269270	A3SS	ENSMUST00000172518.8	known	0.00	0	41	0	41	n	0.05	3	61	3	61	y	0.00	0	43	0	43	n	0.00	0	40	0	40	n	0.02	1	58	1	58	n	0.00	0	20	0	20	n	0.00	0	58	0	58	n	0.00	0	24	0	24	n	0.02	1	46	1	46	n	0.06	3	45	3	45	y	0.05	2	42	2	42	y	0.00	0	49	0	49	n	ENSMUSG00000036315.14	Polr1h	chr17	protein_coding	RNA polymerase I subunit H
known_NIR_8396	chr17	37269687	37275249	+	37269594	37275249	A5SS	ENSMUST00000040177.7	known	0.00	0	48	0	48	n	0.08	4	47	4	47	y	0.00	0	59	0	59	n	0.07	4	50	4	50	y	0.06	5	76	5	76	y	0.00	0	34	0	34	n	0.04	3	68	3	68	y	0.00	0	41	0	41	n	0.05	2	42	2	42	y	0.09	5	52	5	52	y	0.06	3	51	3	51	y	0.10	7	62	7	62	y	ENSMUSG00000036214.15	Polr1has	chr17	protein_coding	RNA polymerase I subunit H, antisense
known_NIR_8397	chr17	37269687	37275249	+	37269978	37275249	A5SS	ENSMUST00000172672.8	known	0.00	0	4	0	4	n	0.50	4	4	4	4	n	0.00	0	9	0	9	n	0.40	4	6	4	6	y	0.29	5	12	5	12	y	0.00	0	1	0	1	n	0.38	3	5	3	5	n	0.00	0	2	0	2	n	0.25	2	6	2	6	n	0.56	5	4	5	4	n	0.43	3	4	3	4	n	0.70	7	3	7	3	y	ENSMUSG00000036214.15	Polr1has	chr17	protein_coding	RNA polymerase I subunit H, antisense
known_NIR_8398	chr17	37269978	37275249	+	37269594	37275249	A5SS	ENSMUST00000040177.7	known	0.08	4	48	4	48	y	0.08	4	47	4	47	y	0.13	9	59	9	59	y	0.11	6	50	6	50	y	0.14	12	76	12	76	y	0.03	1	34	1	34	n	0.07	5	68	5	68	y	0.05	2	41	2	41	y	0.12	6	42	6	42	y	0.07	4	52	4	52	y	0.07	4	51	4	51	y	0.05	3	62	3	62	y	ENSMUSG00000036214.15	Polr1has	chr17	protein_coding	RNA polymerase I subunit H, antisense
known_NIR_8399	chr17	41237361	41238030	-	41235512	41238030	A3SS	ENSMUST00000087114.5	known	0.33	1	2	1	2	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.12	1	7	1	7	n	0.00	0	5	0	5	n	0.00	0	18	0	18	n	0.00	0	3	0	3	n	0.18	2	9	2	9	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	ENSMUSG00000023919.9	Cenpq	chr17	protein_coding	centromere protein Q
known_NIR_8400	chr17	43145172	43149593	-	43145176	43149593	A3SS	ENSMUST00000024709.9	known	0.00	0	22	0	22	n	0.00	0	22	0	22	n	0.04	3	79	3	79	y	0.00	0	25	0	25	n	0.00	0	48	0	48	n	0.00	0	32	0	32	n	0.00	0	33	0	33	n	0.00	0	45	0	45	n	0.00	0	24	0	24	n	0.00	0	36	0	36	n	0.00	0	21	0	21	n	0.00	0	40	0	40	n	ENSMUSG00000061665.8	Cd2ap	chr17	protein_coding	CD2-associated protein
known_NIR_8401	chr17	43156370	43187204	-	43156370;43163419	43163259;43187204	ES	ENSMUST00000024709.9	known	0.00	0	15.0	0	20;10	n	0.00	0	6.5	0	7;6	n	0.00	0	57.5	0	76;39	n	0.00	0	25.5	0	30;21	n	0.00	0	44.0	0	60;28	n	0.00	0	26.5	0	34;19	n	0.00	0	24.0	0	30;18	n	0.00	0	29.5	0	43;16	n	0.00	0	17.0	0	25;9	n	0.09	3	31.0	3	39;23	y	0.00	0	11.0	0	19;3	n	0.00	0	33.5	0	47;20	n	ENSMUSG00000061665.8	Cd2ap	chr17	protein_coding	CD2-associated protein
known_NIR_8402	chr17	43700598	43714809	+	43671487	43714809	A5SS	ENSMUST00000226087.2	known	0.00	0	1	0	1	n	-	-	-	-	-	-	0.80	8	2	8	2	y	-	-	-	-	-	-	0.43	3	4	3	4	n	1.00	4	0	4	0	n	0.78	7	2	7	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.83	5	1	5	1	n	1.00	1	0	1	0	n	0.43	3	4	3	4	n	ENSMUSG00000056492.7	Adgrf5	chr17	protein_coding	adhesion G protein-coupled receptor F5
known_NIR_8403	chr17	43748577	43750842	+	43748577	43750567	A3SS	ENSMUST00000225004.2	known	0.25	2	6	2	6	n	0.00	0	5	0	5	n	0.44	4	5	4	5	n	0.17	1	5	1	5	n	0.33	2	4	2	4	n	0.60	3	2	3	2	n	0.46	6	7	6	7	y	0.50	2	2	2	2	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.50	1	1	1	1	n	0.33	3	6	3	6	n	ENSMUSG00000056492.7	Adgrf5	chr17	protein_coding	adhesion G protein-coupled receptor F5
known_NIR_8404	chr17	43748577;43750686	43750567;43750842	+	43748577	43750842	cassetteExon	ENSMUST00000226087.2	known	0.60	3.0	2	6;0	2	n	1.00	3.0	0	5;1	0	n	0.62	6.5	4	5;8	4	y	0.80	4.0	1	5;3	1	n	0.69	4.5	2	4;5	2	y	0.33	1.5	3	2;1	3	n	0.48	5.5	6	7;4	6	y	0.50	2.0	2	2;2	2	n	0.50	1.0	1	2;0	1	n	1.00	3.5	0	4;3	0	n	0.50	1.0	1	1;1	1	n	0.54	3.5	3	6;1	3	n	ENSMUSG00000056492.7	Adgrf5	chr17	protein_coding	adhesion G protein-coupled receptor F5
known_NIR_8405	chr17	44115006	44147162	+	44112987	44147162	A5SS	ENSMUST00000229744.2	known	0.00	0	9	0	9	n	0.20	1	4	1	4	n	0.34	13	25	13	25	y	0.00	0	13	0	13	n	0.06	1	16	1	16	n	0.19	3	13	3	13	y	0.00	0	17	0	17	n	0.00	0	17	0	17	n	0.00	0	1	0	1	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	ENSMUSG00000039601.17	Rcan2	chr17	protein_coding	regulator of calcineurin 2
known_NIR_8406	chr17	44328831	44331850	+	44328831	44331844	A3SS	ENSMUST00000228972.2	known	0.00	0	21	0	21	n	0.00	0	27	0	27	n	0.06	3	45	3	45	y	0.00	0	16	0	16	n	0.00	0	28	0	28	n	0.00	0	41	0	41	n	0.00	0	52	0	52	n	0.00	0	35	0	35	n	0.00	0	22	0	22	n	0.00	0	23	0	23	n	0.00	0	19	0	19	n	0.00	0	10	0	10	n	ENSMUSG00000039601.17	Rcan2	chr17	protein_coding	regulator of calcineurin 2
known_NIR_8407	chr17	44389873	44391538	+	44389789	44391538	A5SS	ENSMUST00000154166.8	known	0.95	19	1	19	1	n	1.00	8	0	8	0	n	0.79	19	5	19	5	y	0.93	38	3	38	3	y	0.84	31	6	31	6	y	0.68	13	6	13	6	y	0.76	16	5	16	5	y	0.80	16	4	16	4	y	0.82	9	2	9	2	y	0.82	27	6	27	6	y	0.79	22	6	22	6	y	0.81	26	6	26	6	y	ENSMUSG00000023960.14	Enpp5	chr17	protein_coding	ectonucleotide pyrophosphatase/phosphodiesterase 5
known_NIR_8408	chr17	44413555	44416602	-	44413555	44416540	A5SS	ENSMUST00000024757.14	known	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.44	7	9	7	9	y	0.62	8	5	8	5	y	0.38	3	5	3	5	n	0.57	4	3	4	3	n	0.50	2	2	2	2	n	0.38	3	5	3	5	n	-	-	-	-	-	-	0.75	3	1	3	1	n	0.67	2	1	2	1	n	1.00	3	0	3	0	n	ENSMUSG00000023961.17	Enpp4	chr17	protein_coding	ectonucleotide pyrophosphatase/phosphodiesterase 4
known_NIR_8409	chr17	45359279	45430011	+	45359279	45430030	A3SS	ENSMUST00000050630.14	known	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	17	0	17	n	0.00	0	5	0	5	n	0.03	1	31	1	31	n	0.00	0	7	0	7	n	0.00	0	17	0	17	n	0.00	0	22	0	22	n	0.00	0	23	0	23	n	0.11	2	16	2	16	y	ENSMUSG00000038954.15	Supt3	chr17	protein_coding	SPT3, SAGA and STAGA complex component
known_NIR_8410	chr17	45871573	45872996	+	45871573	45872928	A3SS	ENSMUST00000024742.9	known	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.14	2	12	2	12	y	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	ENSMUSG00000023947.9	Nfkbie	chr17	protein_coding	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon
known_NIR_8411	chr17	45876005	45876126	+	45876005	45876590	A3SS	ENSMUST00000226086.2	known	0.07	2	25	2	25	y	0.00	0	16	0	16	n	0.46	6	7	6	7	y	0.16	3	16	3	16	y	0.20	4	16	4	16	y	0.57	4	3	4	3	n	0.20	4	16	4	16	y	0.00	0	3	0	3	n	0.08	1	12	1	12	n	0.22	5	18	5	18	y	0.00	0	11	0	11	n	0.36	5	9	5	9	y	ENSMUSG00000037089.12	Slc35b2	chr17	protein_coding	solute carrier family 35, member B2
known_NIR_8412	chr17	45876005	45876126	+	45876005	45877235	A3SS	ENSMUST00000224905.2	known	0.03	2	74	2	74	y	0.00	0	77	0	77	n	0.07	6	85	6	85	y	0.03	3	96	3	96	y	0.03	4	116	4	116	y	0.08	4	48	4	48	y	0.04	4	96	4	96	y	0.00	0	57	0	57	n	0.01	1	72	1	72	n	0.04	5	114	5	114	y	0.00	0	88	0	88	n	0.05	5	100	5	100	y	ENSMUSG00000037089.12	Slc35b2	chr17	protein_coding	solute carrier family 35, member B2
known_NIR_8413	chr17	45876005	45876590	+	45876005	45877235	A3SS	ENSMUST00000224905.2	known	0.25	25	74	25	74	y	0.17	16	77	16	77	y	0.08	7	85	7	85	y	0.14	16	96	16	96	y	0.12	16	116	16	116	y	0.06	3	48	3	48	y	0.14	16	96	16	96	y	0.05	3	57	3	57	y	0.14	12	72	12	72	y	0.14	18	114	18	114	y	0.11	11	88	11	88	y	0.08	9	100	9	100	y	ENSMUSG00000037089.12	Slc35b2	chr17	protein_coding	solute carrier family 35, member B2
known_NIR_8414	chr17	45896708	45898154	-	45896708;45897231	45897020;45898154	ES	ENSMUST00000163492.8	known	0.00	2	666.0	2	732;600	y	0.00	2	630.5	2	743;518	y	0.00	0	174.5	0	205;144	n	0.00	2	504.5	2	556;453	y	0.00	0	636.5	0	748;525	n	0.00	0	175.0	0	205;145	n	0.00	0	647.5	0	740;555	n	0.00	0	201.0	0	214;188	n	0.01	4	524.0	4	578;470	y	0.00	2	643.5	2	735;552	y	0.00	2	583.0	2	678;488	y	0.00	0	582.0	0	616;548	n	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
known_NIR_8415	chr17	45896708	45898154	-	45897231	45898154	3pMXE	ENSMUST00000171978.2	known	0.00	2	600	2	600	y	0.00	2	518	2	518	y	0.00	0	144	0	144	n	0.00	2	453	2	453	y	0.00	0	525	0	525	n	0.00	0	145	0	145	n	0.00	0	555	0	555	n	0.00	0	188	0	188	n	0.01	4	470	4	470	y	0.00	2	552	2	552	y	0.00	2	488	2	488	y	0.00	0	548	0	548	n	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
known_NIR_8416	chr17	45899312	45899922	-	45899312	45899928	A5SS	ENSMUST00000163492.8	known	0.38	201	326	201	326	y	0.41	153	219	153	219	y	0.26	34	96	34	96	y	0.31	135	294	135	294	y	0.33	159	319	159	319	y	0.38	53	87	53	87	y	0.39	175	276	175	276	y	0.35	67	125	67	125	y	0.34	125	240	125	240	y	0.34	164	315	164	315	y	0.31	127	288	127	288	y	0.37	160	269	160	269	y	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
known_NIR_8417	chr17	45901264	45904258	-	45901264	45903105	5pMXE	ENSMUST00000163492.8	known	0.02	7	305	7	305	y	0.02	4	222	4	222	y	0.00	0	64	0	64	n	0.03	7	267	7	267	y	0.01	2	315	2	315	y	0.01	1	73	1	73	n	0.01	2	241	2	241	y	0.03	3	93	3	93	y	0.04	8	219	8	219	y	0.03	7	242	7	242	y	0.01	2	205	2	205	y	0.05	11	220	11	220	y	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
known_NIR_8418	chr17	45901264	45904258	-	45901264;45903187	45903105;45904258	ES	ENSMUST00000167692.8	known	0.03	7	254.5	7	305;204	y	0.02	4	190.0	4	222;158	y	0.00	0	40.5	0	64;17	n	0.03	7	218.0	7	267;169	y	0.01	2	236.0	2	315;157	y	0.02	1	51.0	1	73;29	n	0.01	2	190.0	2	241;139	y	0.04	3	73.5	3	93;54	y	0.04	8	181.5	8	219;144	y	0.03	7	200.0	7	242;158	y	0.01	2	157.5	2	205;110	y	0.05	11	192.0	11	220;164	y	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
known_NIR_8419	chr17	45901264	45906408	-	45901264	45903105	5pMXE	ENSMUST00000163492.8	known	0.02	5	305	5	305	y	0.02	4	222	4	222	y	0.04	3	64	3	64	y	0.03	8	267	8	267	y	0.02	5	315	5	315	y	0.00	0	73	0	73	n	0.02	6	241	6	241	y	0.00	0	93	0	93	n	0.02	5	219	5	219	y	0.01	2	242	2	242	y	0.02	5	205	5	205	y	0.03	7	220	7	220	y	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
known_NIR_8420	chr17	45901264	45906408	-	45901264	45910399	A5SS	ENSMUST00000169729.8	known	0.21	5	19	5	19	y	0.20	4	16	4	16	y	0.21	3	11	3	11	y	0.33	8	16	8	16	y	0.15	5	28	5	28	y	0.00	0	14	0	14	n	0.16	6	31	6	31	y	0.00	0	14	0	14	n	0.16	5	26	5	26	y	0.07	2	25	2	25	y	0.20	5	20	5	20	y	0.39	7	11	7	11	y	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
known_NIR_8421	chr17	45901264	45906408	-	45901264;45903187	45903105;45906408	ES	ENSMUST00000064889.13	known	0.03	5	161.0	5	305;17	y	0.03	4	118.5	4	222;15	y	0.07	3	38.0	3	64;12	y	0.05	8	144.0	8	267;21	y	0.03	5	168.5	5	315;22	y	0.00	0	39.5	0	73;6	n	0.04	6	132.5	6	241;24	y	0.00	0	50.5	0	93;8	n	0.04	5	115.0	5	219;11	y	0.01	2	132.0	2	242;22	y	0.04	5	110.5	5	205;16	y	0.05	7	124.5	7	220;29	y	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
known_NIR_8422	chr17	45901264	45910399	-	45901264	45903105	5pMXE	ENSMUST00000163492.8	known	0.06	19	305	19	305	y	0.07	16	222	16	222	y	0.15	11	64	11	64	y	0.06	16	267	16	267	y	0.08	28	315	28	315	y	0.16	14	73	14	73	y	0.11	31	241	31	241	y	0.13	14	93	14	93	y	0.11	26	219	26	219	y	0.09	25	242	25	242	y	0.09	20	205	20	205	y	0.05	11	220	11	220	y	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
known_NIR_8423	chr17	45901264	45910399	-	45901264;45903187	45903105;45910399	ES	ENSMUST00000171847.8	known	0.11	19	158.0	19	305;11	y	0.12	16	116.5	16	222;11	y	0.23	11	36.0	11	64;8	y	0.10	16	142.0	16	267;17	y	0.14	28	175.5	28	315;36	y	0.25	14	42.0	14	73;11	y	0.19	31	133.0	31	241;25	y	0.22	14	49.5	14	93;6	y	0.18	26	115.0	26	219;11	y	0.16	25	133.5	25	242;25	y	0.16	20	109.0	20	205;13	y	0.08	11	124.0	11	220;28	y	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
known_NIR_8424	chr17	45901264;45904358	45904258;45906408	-	45901264	45906408	cassetteExon	ENSMUST00000167195.8	known	0.80	20.0	5	7;33	5	y	0.80	16.5	4	4;29	4	y	0.75	9.0	3	0;18	3	n	0.75	24.0	8	7;41	8	y	0.74	14.0	5	2;26	5	y	1.00	5.5	0	1;10	0	n	0.74	17.0	6	2;32	6	y	1.00	6.0	0	3;9	0	n	0.73	13.5	5	8;19	5	y	0.88	14.0	2	7;21	2	y	0.71	12.0	5	2;22	5	y	0.76	22.0	7	11;33	7	y	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
known_NIR_8425	chr17	45901264;45904358	45904258;45906408	-	45901264;45903187	45903105;45906408	MXE	ENSMUST00000064889.13	known	0.11	20.0	161.0	7;33	305;17	y	0.12	16.5	118.5	4;29	222;15	y	0.19	9.0	38.0	0;18	64;12	n	0.14	24.0	144.0	7;41	267;21	y	0.08	14.0	168.5	2;26	315;22	y	0.12	5.5	39.5	1;10	73;6	n	0.11	17.0	132.5	2;32	241;24	y	0.11	6.0	50.5	3;9	93;8	y	0.11	13.5	115.0	8;19	219;11	y	0.10	14.0	132.0	7;21	242;22	y	0.10	12.0	110.5	2;22	205;16	y	0.15	22.0	124.5	11;33	220;29	y	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
known_NIR_8426	chr17	45901264;45904358	45904258;45910399	-	45901264	45910399	cassetteExon	ENSMUST00000169729.8	known	0.25	6.5	19	7;6	19	y	0.30	7.0	16	4;10	16	y	0.19	2.5	11	0;5	11	n	0.26	5.5	16	7;4	16	y	0.16	5.5	28	2;9	28	y	0.18	3.0	14	1;5	14	n	0.13	4.5	31	2;7	31	y	0.22	4.0	14	3;5	14	y	0.16	5.0	26	8;2	26	y	0.25	8.5	25	7;10	25	y	0.13	3.0	20	2;4	20	y	0.44	8.5	11	11;6	11	y	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
known_NIR_8427	chr17	45901264;45904358	45904258;45910399	-	45901264;45903187	45903105;45910399	MXE	ENSMUST00000171847.8	known	0.04	6.5	158.0	7;6	305;11	y	0.06	7.0	116.5	4;10	222;11	y	0.06	2.5	36.0	0;5	64;8	n	0.04	5.5	142.0	7;4	267;17	y	0.03	5.5	175.5	2;9	315;36	y	0.07	3.0	42.0	1;5	73;11	n	0.03	4.5	133.0	2;7	241;25	y	0.07	4.0	49.5	3;5	93;6	y	0.04	5.0	115.0	8;2	219;11	y	0.06	8.5	133.5	7;10	242;25	y	0.03	3.0	109.0	2;4	205;13	y	0.06	8.5	124.0	11;6	220;28	y	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
known_NIR_8428	chr17	45901264;45904489	45904258;45906408	-	45901264;45903187	45903105;45906408	MXE	ENSMUST00000064889.13	known	0.02	3.5	161.0	7;0	305;17	n	0.02	2.0	118.5	4;0	222;15	n	0.00	0.0	38.0	0;0	64;12	n	0.02	3.5	144.0	7;0	267;21	n	0.01	1.0	168.5	2;0	315;22	n	0.01	0.5	39.5	1;0	73;6	n	0.01	1.0	132.5	2;0	241;24	n	0.03	1.5	50.5	3;0	93;8	n	0.03	4.0	115.0	8;0	219;11	n	0.03	3.5	132.0	7;0	242;22	n	0.02	2.0	110.5	2;2	205;16	y	0.04	5.5	124.5	11;0	220;29	n	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
known_NIR_8429	chr17	45903187	45906408	-	45903187	45904258	A5SS&ES	ENSMUST00000166633.8	known	0.08	17	204	17	204	y	0.09	15	158	15	158	y	0.41	12	17	12	17	y	0.11	21	169	21	169	y	0.12	22	157	22	157	y	0.17	6	29	6	29	y	0.15	24	139	24	139	y	0.13	8	54	8	54	y	0.07	11	144	11	144	y	0.12	22	158	22	158	y	0.13	16	110	16	110	y	0.15	29	164	29	164	y	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
known_NIR_8430	chr17	45903187	45906408	-	45903187	45910399	A5SS	ENSMUST00000171847.8	known	0.61	17	11	17	11	y	0.58	15	11	15	11	y	0.60	12	8	12	8	y	0.55	21	17	21	17	y	0.38	22	36	22	36	y	0.35	6	11	6	11	y	0.49	24	25	24	25	y	0.57	8	6	8	6	y	0.50	11	11	11	11	y	0.47	22	25	22	25	y	0.55	16	13	16	13	y	0.51	29	28	29	28	y	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
known_NIR_8431	chr17	45903187	45906721	-	45903187	45904258	A5SS&ES	ENSMUST00000166633.8	known	0.00	0	204	0	204	n	0.00	0	158	0	158	n	0.00	0	17	0	17	n	0.00	0	169	0	169	n	0.00	0	157	0	157	n	0.00	0	29	0	29	n	0.00	0	139	0	139	n	0.00	0	54	0	54	n	0.00	0	144	0	144	n	0.00	0	158	0	158	n	0.00	0	110	0	110	n	0.01	2	164	2	164	y	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
known_NIR_8432	chr17	45903187	45906721	-	45903187	45906408	5pMXE	ENSMUST00000064889.13	known	0.00	0	17	0	17	n	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.00	0	21	0	21	n	0.00	0	22	0	22	n	0.00	0	6	0	6	n	0.00	0	24	0	24	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	22	0	22	n	0.00	0	16	0	16	n	0.06	2	29	2	29	y	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
known_NIR_8433	chr17	45903187	45906721	-	45903187	45910399	A5SS	ENSMUST00000171847.8	known	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	17	0	17	n	0.00	0	36	0	36	n	0.00	0	11	0	11	n	0.00	0	25	0	25	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	25	0	25	n	0.00	0	13	0	13	n	0.07	2	28	2	28	y	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
known_NIR_8434	chr17	45903187	45910399	-	45903187	45904258	5pMXE	ENSMUST00000163905.8	known	0.05	11	204	11	204	y	0.07	11	158	11	158	y	0.32	8	17	8	17	y	0.09	17	169	17	169	y	0.19	36	157	36	157	y	0.28	11	29	11	29	y	0.15	25	139	25	139	y	0.10	6	54	6	54	y	0.07	11	144	11	144	y	0.14	25	158	25	158	y	0.11	13	110	13	110	y	0.15	28	164	28	164	y	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
known_NIR_8435	chr17	45903187;45904358	45904258;45906408	-	45903187	45906408	cassetteExon	ENSMUST00000064889.13	known	0.87	118.5	17	204;33	17	y	0.86	93.5	15	158;29	15	y	0.59	17.5	12	17;18	12	y	0.83	105.0	21	169;41	21	y	0.81	91.5	22	157;26	22	y	0.76	19.5	6	29;10	6	y	0.78	85.5	24	139;32	24	y	0.80	31.5	8	54;9	8	y	0.88	81.5	11	144;19	11	y	0.80	89.5	22	158;21	22	y	0.80	66.0	16	110;22	16	y	0.77	98.5	29	164;33	29	y	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
known_NIR_8436	chr17	45903187;45904358	45904258;45910399	-	45903187	45910399	cassetteExon	ENSMUST00000171847.8	known	0.91	105.0	11	204;6	11	y	0.88	84.0	11	158;10	11	y	0.58	11.0	8	17;5	8	y	0.84	86.5	17	169;4	17	y	0.70	83.0	36	157;9	36	y	0.61	17.0	11	29;5	11	y	0.74	73.0	25	139;7	25	y	0.83	29.5	6	54;5	6	y	0.87	73.0	11	144;2	11	y	0.77	84.0	25	158;10	25	y	0.81	57.0	13	110;4	13	y	0.75	85.0	28	164;6	28	y	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
known_NIR_8437	chr17	45903187;45904489	45904258;45906408	-	45903187	45906408	cassetteExon	ENSMUST00000064889.13	known	0.86	102.0	17	204;0	17	n	0.84	79.0	15	158;0	15	n	0.41	8.5	12	17;0	12	n	0.80	84.5	21	169;0	21	n	0.78	78.5	22	157;0	22	n	0.71	14.5	6	29;0	6	n	0.74	69.5	24	139;0	24	n	0.77	27.0	8	54;0	8	n	0.87	72.0	11	144;0	11	n	0.78	79.0	22	158;0	22	n	0.78	56.0	16	110;2	16	y	0.74	82.0	29	164;0	29	n	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
known_NIR_8438	chr17	45904358	45906408	-	45904358	45904482	5pMXE	ENSMUST00000167692.8	known	0.92	33	3	33	3	y	0.97	29	1	29	1	n	1.00	18	0	18	0	n	0.79	41	11	41	11	y	0.79	26	7	26	7	y	0.77	10	3	10	3	y	0.89	32	4	32	4	y	0.75	9	3	9	3	y	0.79	19	5	19	5	y	0.68	21	10	21	10	y	1.00	22	0	22	0	n	0.87	33	5	33	5	y	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
known_NIR_8439	chr17	45904358	45906408	-	45904489	45906408	A3SS	ENSMUST00000167332.8	known	1.00	33	0	33	0	n	1.00	29	0	29	0	n	1.00	18	0	18	0	n	1.00	41	0	41	0	n	1.00	26	0	26	0	n	1.00	10	0	10	0	n	1.00	32	0	32	0	n	1.00	9	0	9	0	n	1.00	19	0	19	0	n	1.00	21	0	21	0	n	0.92	22	2	22	2	y	1.00	33	0	33	0	n	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
known_NIR_8440	chr17	45904358	45907916	-	45904358	45904482	5pMXE	ENSMUST00000167692.8	known	0.00	0	3	0	3	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.50	5	5	5	5	y	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
known_NIR_8441	chr17	45904358	45907916	-	45904358	45906408	5pMXE	ENSMUST00000164217.8	known	0.00	0	33	0	33	n	0.03	1	29	1	29	n	0.00	0	18	0	18	n	0.00	0	41	0	41	n	0.00	0	26	0	26	n	0.00	0	10	0	10	n	0.00	0	32	0	32	n	0.10	1	9	1	9	n	0.00	0	19	0	19	n	0.00	0	21	0	21	n	0.00	0	22	0	22	n	0.13	5	33	5	33	y	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
known_NIR_8442	chr17	45904358	45907916	-	45904358	45910399	A5SS	ENSMUST00000166633.8	known	0.00	0	6	0	6	n	0.09	1	10	1	10	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.45	5	6	5	6	y	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
known_NIR_8443	chr17	45904358	45910399	-	45904358	45904482	5pMXE	ENSMUST00000167692.8	known	0.67	6	3	6	3	n	0.91	10	1	10	1	n	1.00	5	0	5	0	n	0.27	4	11	4	11	y	0.56	9	7	9	7	y	0.62	5	3	5	3	n	0.64	7	4	7	4	y	0.62	5	3	5	3	n	0.29	2	5	2	5	n	0.50	10	10	10	10	y	1.00	4	0	4	0	n	0.55	6	5	6	5	y	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
known_NIR_8444	chr17	45904358	45910399	-	45904358	45906408	5pMXE	ENSMUST00000164217.8	known	0.15	6	33	6	33	y	0.26	10	29	10	29	y	0.22	5	18	5	18	y	0.09	4	41	4	41	y	0.26	9	26	9	26	y	0.33	5	10	5	10	y	0.18	7	32	7	32	y	0.36	5	9	5	9	y	0.10	2	19	2	19	y	0.32	10	21	10	21	y	0.15	4	22	4	22	y	0.15	6	33	6	33	y	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
known_NIR_8445	chr17	45988942	45990163	-	45988942;45989927	45989889;45990163	ES	ENSMUST00000113523.9	known	0.00	0	124.5	0	130;119	n	0.00	0	69.5	0	77;62	n	0.00	0	96.0	0	97;95	n	0.00	0	120.5	0	118;123	n	0.00	0	169.0	0	171;167	n	0.00	0	56.0	0	61;51	n	0.05	7	122.5	7	130;115	y	0.00	0	76.0	0	82;70	n	0.00	0	102.5	0	106;99	n	0.00	0	166.0	0	169;163	n	0.00	0	87.5	0	91;84	n	0.00	0	165.0	0	172;158	n	ENSMUSG00000036026.16	Tmem63b	chr17	protein_coding	transmembrane protein 63b
known_NIR_8446	chr17	45988942	45990163	-	45989927	45990163	3pMXE	ENSMUST00000143907.3	known	0.00	0	119	0	119	n	0.00	0	62	0	62	n	0.00	0	95	0	95	n	0.00	0	123	0	123	n	0.00	0	167	0	167	n	0.00	0	51	0	51	n	0.06	7	115	7	115	y	0.00	0	70	0	70	n	0.00	0	99	0	99	n	0.00	0	163	0	163	n	0.00	0	84	0	84	n	0.00	0	158	0	158	n	ENSMUSG00000036026.16	Tmem63b	chr17	protein_coding	transmembrane protein 63b
known_NIR_8447	chr17	45990640	45991514	-	45990640	45997043	A5SS	ENSMUST00000113523.9	known	0.00	0	39	0	39	n	0.00	0	27	0	27	n	0.06	2	31	2	31	y	0.06	3	50	3	50	y	0.03	2	61	2	61	y	0.00	0	26	0	26	n	0.02	1	54	1	54	n	0.03	1	34	1	34	n	0.07	2	26	2	26	y	0.00	0	69	0	69	n	0.08	3	35	3	35	y	0.03	2	57	2	57	y	ENSMUSG00000036026.16	Tmem63b	chr17	protein_coding	transmembrane protein 63b
known_NIR_8448	chr17	45990640	45996842	-	45990640	45997043	A5SS	ENSMUST00000113523.9	known	0.00	0	39	0	39	n	0.00	0	27	0	27	n	0.11	4	31	4	31	y	0.02	1	50	1	50	n	0.00	0	61	0	61	n	0.00	0	26	0	26	n	0.05	3	54	3	54	y	0.00	0	34	0	34	n	0.07	2	26	2	26	y	0.04	3	69	3	69	y	0.05	2	35	2	35	y	0.03	2	57	2	57	y	ENSMUSG00000036026.16	Tmem63b	chr17	protein_coding	transmembrane protein 63b
known_NIR_8449	chr17	46006498;46007882	46007645;46008974	+	46006498	46008974	cassetteExon	ENSMUST00000024734.8	known	0.04	9.5	253	15;4	253	y	0.02	5.5	298	5;6	298	y	0.03	4.5	161	4;5	161	y	0.02	7.5	308	10;5	308	y	0.02	8.0	334	5;11	334	y	0.03	3.5	112	3;4	112	y	0.02	8.0	388	9;7	388	y	0.02	3.0	123	4;2	123	y	0.01	4.0	286	3;5	286	y	0.03	13.0	449	17;9	449	y	0.02	7.0	306	10;4	306	y	0.02	7.0	356	10;4	356	y	ENSMUSG00000023939.8	Mrpl14	chr17	protein_coding	mitochondrial ribosomal protein L14
known_NIR_8450	chr17	46329805	46333203	-	46329805	46331917	5pMXE	ENSMUST00000143985.2	known	0.01	2	371	2	371	y	0.01	2	276	2	276	y	0.00	1	391	1	391	n	0.00	0	326	0	326	n	0.00	1	508	1	508	n	0.00	0	128	0	128	n	0.00	1	313	1	313	n	0.00	0	171	0	171	n	0.00	1	344	1	344	n	0.00	1	420	1	420	n	0.01	5	353	5	353	y	0.01	4	469	4	469	y	ENSMUSG00000023951.19	Vegfa	chr17	protein_coding	vascular endothelial growth factor A
known_NIR_8451	chr17	46329805	46333203	-	46329805;46332048	46331917;46333203	ES	ENSMUST00000142351.9	known	0.01	2	275.5	2	371;180	y	0.01	2	210.0	2	276;144	y	0.00	1	261.5	1	391;132	n	0.00	0	246.0	0	326;166	n	0.00	1	371.0	1	508;234	n	0.00	0	94.0	0	128;60	n	0.00	1	244.5	1	313;176	n	0.00	0	130.0	0	171;89	n	0.00	1	265.0	1	344;186	n	0.00	1	318.0	1	420;216	n	0.02	5	299.0	5	353;245	y	0.01	4	338.5	4	469;208	y	ENSMUSG00000023951.19	Vegfa	chr17	protein_coding	vascular endothelial growth factor A
known_NIR_8452	chr17	46329805	46334991	-	46329805	46331917	5pMXE	ENSMUST00000143985.2	known	0.07	30	371	30	371	y	0.07	22	276	22	276	y	0.16	73	391	73	391	y	0.07	25	326	25	326	y	0.11	64	508	64	508	y	0.09	12	128	12	128	y	0.11	40	313	40	313	y	0.14	29	171	29	171	y	0.07	25	344	25	344	y	0.08	38	420	38	420	y	0.08	30	353	30	353	y	0.07	35	469	35	469	y	ENSMUSG00000023951.19	Vegfa	chr17	protein_coding	vascular endothelial growth factor A
known_NIR_8453	chr17	46329805;46332048	46331917;46334991	-	46329805	46334991	cassetteExon	ENSMUST00000024747.14	known	0.89	244.0	30	371;117	30	y	0.89	181.5	22	276;87	22	y	0.80	289.5	73	391;188	73	y	0.90	221.5	25	326;117	25	y	0.84	339.0	64	508;170	64	y	0.88	91.5	12	128;55	12	y	0.85	221.5	40	313;130	40	y	0.80	117.5	29	171;64	29	y	0.90	234.0	25	344;124	25	y	0.89	294.0	38	420;168	38	y	0.89	242.5	30	353;132	30	y	0.90	311.5	35	469;154	35	y	ENSMUSG00000023951.19	Vegfa	chr17	protein_coding	vascular endothelial growth factor A
known_NIR_8454	chr17	46329805;46333274	46333203;46334991	-	46329805	46334991	cassetteExon	ENSMUST00000024747.14	known	0.52	33.0	30	2;64	30	y	0.54	26.0	22	2;50	22	y	0.29	30.5	73	1;60	73	n	0.59	35.5	25	0;71	25	n	0.39	41.0	64	1;81	64	n	0.55	14.5	12	0;29	12	n	0.43	30.5	40	1;60	40	n	0.34	15.0	29	0;30	29	n	0.62	40.5	25	1;80	25	n	0.55	47.0	38	1;93	38	n	0.61	46.0	30	5;87	30	y	0.61	54.0	35	4;104	35	y	ENSMUSG00000023951.19	Vegfa	chr17	protein_coding	vascular endothelial growth factor A
known_NIR_8455	chr17	46329805;46333274	46333203;46334991	-	46329805;46332048	46331917;46334991	MXE	ENSMUST00000071648.12	known	0.12	33.0	244.0	2;64	371;117	y	0.13	26.0	181.5	2;50	276;87	y	0.10	30.5	289.5	1;60	391;188	n	0.14	35.5	221.5	0;71	326;117	n	0.11	41.0	339.0	1;81	508;170	n	0.14	14.5	91.5	0;29	128;55	n	0.12	30.5	221.5	1;60	313;130	n	0.11	15.0	117.5	0;30	171;64	n	0.15	40.5	234.0	1;80	344;124	n	0.14	47.0	294.0	1;93	420;168	n	0.16	46.0	242.5	5;87	353;132	y	0.15	54.0	311.5	4;104	469;154	y	ENSMUSG00000023951.19	Vegfa	chr17	protein_coding	vascular endothelial growth factor A
known_NIR_8456	chr17	46332048	46333221	-	46332048	46333203	A5SS	ENSMUST00000142351.9	known	0.00	0	180	0	180	n	0.00	0	144	0	144	n	0.00	0	132	0	132	n	0.00	0	166	0	166	n	0.00	0	234	0	234	n	0.00	0	60	0	60	n	0.00	0	176	0	176	n	0.00	0	89	0	89	n	0.00	0	186	0	186	n	0.03	6	216	6	216	y	0.00	0	245	0	245	n	0.00	0	208	0	208	n	ENSMUSG00000023951.19	Vegfa	chr17	protein_coding	vascular endothelial growth factor A
known_NIR_8457	chr17	46332048;46333274	46333203;46334991	-	46332048	46334991	cassetteExon	ENSMUST00000071648.12	known	0.51	122.0	117	180;64	117	y	0.53	97.0	87	144;50	87	y	0.34	96.0	188	132;60	188	y	0.50	118.5	117	166;71	117	y	0.48	157.5	170	234;81	170	y	0.45	44.5	55	60;29	55	y	0.48	118.0	130	176;60	130	y	0.48	59.5	64	89;30	64	y	0.52	133.0	124	186;80	124	y	0.48	154.5	168	216;93	168	y	0.56	166.0	132	245;87	132	y	0.50	156.0	154	208;104	154	y	ENSMUSG00000023951.19	Vegfa	chr17	protein_coding	vascular endothelial growth factor A
known_NIR_8458	chr17	46332048;46333274	46333221;46334991	-	46332048	46334991	cassetteExon	ENSMUST00000071648.12	known	0.21	32.0	117	0;64	117	n	0.22	25.0	87	0;50	87	n	0.14	30.0	188	0;60	188	n	0.23	35.5	117	0;71	117	n	0.19	40.5	170	0;81	170	n	0.21	14.5	55	0;29	55	n	0.19	30.0	130	0;60	130	n	0.19	15.0	64	0;30	64	n	0.24	40.0	124	0;80	124	n	0.23	49.5	168	6;93	168	y	0.25	43.5	132	0;87	132	n	0.25	52.0	154	0;104	154	n	ENSMUSG00000023951.19	Vegfa	chr17	protein_coding	vascular endothelial growth factor A
known_NIR_8459	chr17	46472252	46472643	+	46472252	46474409	A3SS	ENSMUST00000024748.14	known	0.14	3	18	3	18	y	0.09	2	20	2	20	y	0.25	17	51	17	51	y	0.05	1	21	1	21	n	0.27	11	30	11	30	y	0.29	6	15	6	15	y	0.19	7	29	7	29	y	0.21	6	23	6	23	y	0.20	5	20	5	20	y	0.17	5	24	5	24	y	0.09	2	21	2	21	y	0.09	4	40	4	40	y	ENSMUSG00000023952.14	Gtpbp2	chr17	protein_coding	GTP binding protein 2
known_NIR_8460	chr17	46472252	46473960	+	46472252	46472643	3pMXE	ENSMUST00000165686.2	known	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.11	2	17	2	17	y	0.00	0	1	0	1	n	0.08	1	11	1	11	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	ENSMUSG00000023952.14	Gtpbp2	chr17	protein_coding	GTP binding protein 2
known_NIR_8461	chr17	46472252	46474409	+	46472217	46474409	A5SS	ENSMUST00000169383.8	known	1.00	18	0	18	0	n	1.00	20	0	20	0	n	1.00	51	0	51	0	n	0.88	21	3	21	3	y	0.97	30	1	30	1	n	1.00	15	0	15	0	n	1.00	29	0	29	0	n	1.00	23	0	23	0	n	0.95	20	1	20	1	n	0.89	24	3	24	3	y	1.00	21	0	21	0	n	1.00	40	0	40	0	n	ENSMUSG00000023952.14	Gtpbp2	chr17	protein_coding	GTP binding protein 2
known_NIR_8462	chr17	46472252;46474139	46473960;46474409	+	46472252	46474409	cassetteExon	ENSMUST00000024748.14	known	0.00	0.0	18	0;0	18	n	0.00	0.0	20	0;0	20	n	0.14	8.0	51	2;14	51	y	0.00	0.0	21	0;0	21	n	0.05	1.5	30	1;2	30	n	0.14	2.5	15	0;5	15	n	0.06	2.0	29	0;4	29	n	0.00	0.0	23	0;0	23	n	0.15	3.5	20	0;7	20	n	0.11	3.0	24	0;6	24	n	0.02	0.5	21	1;0	21	n	0.04	1.5	40	0;3	40	n	ENSMUSG00000023952.14	Gtpbp2	chr17	protein_coding	GTP binding protein 2
known_NIR_8463	chr17	46472252;46474334	46473960;46474409	+	46472252	46474409	cassetteExon	ENSMUST00000024748.14	known	0.05	1.0	18	0;2	18	n	0.00	0.0	20	0;0	20	n	0.06	3.5	51	2;5	51	y	0.00	0.0	21	0;0	21	n	0.02	0.5	30	1;0	30	n	0.00	0.0	15	0;0	15	n	0.00	0.0	29	0;0	29	n	0.00	0.0	23	0;0	23	n	0.00	0.0	20	0;0	20	n	0.00	0.0	24	0;0	24	n	0.02	0.5	21	1;0	21	n	0.00	0.0	40	0;0	40	n	ENSMUSG00000023952.14	Gtpbp2	chr17	protein_coding	GTP binding protein 2
known_NIR_8464	chr17	46477576	46478268	+	46477576	46478149	A3SS	ENSMUST00000169383.8	known	0.11	4	33	4	33	y	0.06	3	47	3	47	y	0.04	3	82	3	82	y	0.04	2	54	2	54	y	0.06	3	50	3	50	y	0.02	1	42	1	42	n	0.04	2	53	2	53	y	0.10	4	37	4	37	y	0.16	6	31	6	31	y	0.02	1	56	1	56	n	0.04	1	27	1	27	n	0.00	0	60	0	60	n	ENSMUSG00000023952.14	Gtpbp2	chr17	protein_coding	GTP binding protein 2
known_NIR_8465	chr17	46501702	46509560	-	46501702;46505342	46505128;46509560	ES	ENSMUST00000024749.9	known	0.17	1	5.0	1	8;2	n	0.50	3	3.0	3	3;3	n	0.00	0	10.0	0	11;9	n	0.30	4	9.5	4	9;10	y	0.00	0	11.5	0	10;13	n	0.09	1	10.0	1	9;11	n	0.00	0	6.5	0	5;8	n	0.00	0	7.0	0	9;5	n	0.00	0	5.5	0	2;9	n	0.22	2	7.0	2	8;6	y	0.17	1	5.0	1	5;5	n	0.00	0	7.0	0	4;10	n	ENSMUSG00000023953.10	Polh	chr17	protein_coding	polymerase (DNA directed), eta (RAD 30 related)
known_NIR_8466	chr17	46556674	46558655	-	46556674;46557140	46557033;46558655	ES	ENSMUST00000087026.13	known	0.00	0	80.5	0	89;72	n	0.02	2	81.0	2	78;84	y	0.00	0	104.0	0	105;103	n	0.00	0	93.5	0	85;102	n	0.00	0	104.5	0	98;111	n	0.00	0	51.5	0	48;55	n	0.01	1	96.0	1	93;99	n	0.00	0	58.5	0	58;59	n	0.00	0	82.0	0	74;90	n	0.02	2	123.0	2	109;137	y	0.01	1	72.5	1	69;76	n	0.00	0	117.5	0	110;125	n	ENSMUSG00000067148.16	Polr1c	chr17	protein_coding	polymerase (RNA) I polypeptide C
known_NIR_8467	chr17	46556674	46558655	-	46557140	46558655	A3SS&ES	ENSMUST00000142706.9	known	0.00	0	72	0	72	n	0.02	2	84	2	84	y	0.00	0	103	0	103	n	0.00	0	102	0	102	n	0.00	0	111	0	111	n	0.00	0	55	0	55	n	0.01	1	99	1	99	n	0.00	0	59	0	59	n	0.00	0	90	0	90	n	0.01	2	137	2	137	y	0.01	1	76	1	76	n	0.00	0	125	0	125	n	ENSMUSG00000067148.16	Polr1c	chr17	protein_coding	polymerase (RNA) I polypeptide C
known_NIR_8468	chr17	46562153	46562492	+	46562153	46562290	3pMXE	ENSMUST00000123311.8	known	0.00	0	159	0	159	n	0.00	0	202	0	202	n	0.00	0	240	0	240	n	0.00	0	183	0	183	n	0.00	0	245	0	245	n	0.00	0	129	0	129	n	0.00	0	241	0	241	n	0.00	0	104	0	104	n	0.00	0	131	0	131	n	0.04	7	190	7	190	y	0.00	0	196	0	196	n	0.00	0	202	0	202	n	ENSMUSG00000071074.10	Yipf3	chr17	protein_coding	Yip1 domain family, member 3
known_NIR_8469	chr17	46562153	46562492	+	46562153;46562413	46562290;46562492	ES	ENSMUST00000095263.10	known	0.00	0	210.5	0	159;262	n	0.00	0	266.0	0	202;330	n	0.00	0	253.0	0	240;266	n	0.00	0	223.5	0	183;264	n	0.00	0	304.5	0	245;364	n	0.00	0	145.0	0	129;161	n	0.00	0	298.0	0	241;355	n	0.00	0	144.0	0	104;184	n	0.00	0	183.0	0	131;235	n	0.03	7	263.5	7	190;337	y	0.00	0	254.0	0	196;312	n	0.00	0	261.5	0	202;321	n	ENSMUSG00000071074.10	Yipf3	chr17	protein_coding	Yip1 domain family, member 3
known_NIR_8470	chr17	46562153	46562492	+	46562413	46562492	A5SS	ENSMUST00000151488.2	known	0.00	0	262	0	262	n	0.00	0	330	0	330	n	0.00	0	266	0	266	n	0.00	0	264	0	264	n	0.00	0	364	0	364	n	0.00	0	161	0	161	n	0.00	0	355	0	355	n	0.00	0	184	0	184	n	0.00	0	235	0	235	n	0.02	7	337	7	337	y	0.00	0	312	0	312	n	0.00	0	321	0	321	n	ENSMUSG00000071074.10	Yipf3	chr17	protein_coding	Yip1 domain family, member 3
known_NIR_8471	chr17	46571128	46572062	-	46571835	46572062	3pMXE	ENSMUST00000224404.2	known	0.91	10	1	10	1	n	1.00	13	0	13	0	n	0.95	18	1	18	1	n	0.89	16	2	16	2	y	0.87	20	3	20	3	y	1.00	17	0	17	0	n	0.93	28	2	28	2	y	1.00	24	0	24	0	n	0.67	4	2	4	2	n	0.96	24	1	24	1	n	0.80	8	2	8	2	y	0.95	18	1	18	1	n	ENSMUSG00000012296.17	Tjap1	chr17	protein_coding	tight junction associated protein 1
known_NIR_8472	chr17	46571128;46571835	46571806;46572062	-	46571128	46572062	cassetteExon	ENSMUST00000180283.2	known	0.09	1.0	10	1;1	10	n	0.00	0.0	13	0;0	13	n	0.05	1.0	18	1;1	18	n	0.14	2.5	16	3;2	16	y	0.15	3.5	20	4;3	20	y	0.00	0.0	17	0;0	17	n	0.03	1.0	28	0;2	28	n	0.00	0.0	24	0;0	24	n	0.27	1.5	4	1;2	4	n	0.02	0.5	24	0;1	24	n	0.11	1.0	8	0;2	8	n	0.03	0.5	18	0;1	18	n	ENSMUSG00000012296.17	Tjap1	chr17	protein_coding	tight junction associated protein 1
known_NIR_8473	chr17	46574736	46575809	-	46575116	46575809	A3SS&ES	ENSMUST00000224090.2	known	0.73	8	3	8	3	y	1.00	7	0	7	0	n	0.65	15	8	15	8	y	0.86	6	1	6	1	n	0.82	9	2	9	2	y	0.75	3	1	3	1	n	0.67	8	4	8	4	y	0.92	12	1	12	1	n	0.80	8	2	8	2	y	0.85	17	3	17	3	y	0.80	8	2	8	2	y	0.78	7	2	7	2	n	ENSMUSG00000012296.17	Tjap1	chr17	protein_coding	tight junction associated protein 1
known_NIR_8474	chr17	46574736;46575116	46575020;46575809	-	46574736	46575809	cassetteExon	ENSMUST00000180283.2	known	0.16	1.5	8	0;3	8	n	0.00	0.0	7	0;0	7	n	0.25	5.0	15	2;8	15	y	0.20	1.5	6	2;1	6	n	0.14	1.5	9	1;2	9	n	0.45	2.5	3	4;1	3	n	0.24	2.5	8	1;4	8	n	0.14	2.0	12	3;1	12	n	0.16	1.5	8	1;2	8	n	0.13	2.5	17	2;3	17	y	0.11	1.0	8	0;2	8	n	0.18	1.5	7	1;2	7	n	ENSMUSG00000012296.17	Tjap1	chr17	protein_coding	tight junction associated protein 1
known_NIR_8475	chr17	46574739	46575809	-	46574736	46575809	A3SS	ENSMUST00000180283.2	known	0.27	3	8	3	8	y	0.30	3	7	3	7	y	0.21	4	15	4	15	y	0.45	5	6	5	6	y	0.31	4	9	4	9	y	0.70	7	3	7	3	y	0.27	3	8	3	8	y	0.08	1	12	1	12	n	0.00	0	8	0	8	n	0.23	5	17	5	17	y	0.20	2	8	2	8	y	0.46	6	7	6	7	y	ENSMUSG00000012296.17	Tjap1	chr17	protein_coding	tight junction associated protein 1
known_NIR_8476	chr17	46574739	46575809	-	46575116	46575809	A3SS&ES	ENSMUST00000224901.2	known	0.50	3	3	3	3	n	1.00	3	0	3	0	n	0.33	4	8	4	8	y	0.83	5	1	5	1	n	0.67	4	2	4	2	n	0.88	7	1	7	1	n	0.43	3	4	3	4	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.62	5	3	5	3	n	0.50	2	2	2	2	n	0.75	6	2	6	2	n	ENSMUSG00000012296.17	Tjap1	chr17	protein_coding	tight junction associated protein 1
known_NIR_8477	chr17	46574739;46575116	46575020;46575809	-	46574739	46575809	cassetteExon	ENSMUST00000164342.10	known	0.33	1.5	3	0;3	3	n	0.00	0.0	3	0;0	3	n	0.56	5.0	4	2;8	4	y	0.09	0.5	5	0;1	5	n	0.20	1.0	4	0;2	4	n	0.07	0.5	7	0;1	7	n	0.40	2.0	3	0;4	3	n	0.33	0.5	1	0;1	1	n	1.00	1.0	0	0;2	0	n	0.23	1.5	5	0;3	5	n	0.33	1.0	2	0;2	2	n	0.14	1.0	6	0;2	6	n	ENSMUSG00000012296.17	Tjap1	chr17	protein_coding	tight junction associated protein 1
known_NIR_8478	chr17	46575904;46582855	46582726;46593272	-	46575904	46593272	cassetteExon	ENSMUST00000012440.14	known	0.71	7.5	3	7;8	3	y	0.76	6.5	2	5;8	2	y	0.64	14.5	8	14;15	8	y	0.25	3.0	9	4;2	9	y	0.79	11.5	3	9;14	3	y	0.48	5.5	6	5;6	6	y	0.74	8.5	3	5;12	3	y	0.63	8.5	5	5;12	5	y	0.70	7.0	3	8;6	3	y	0.68	6.5	3	7;6	3	y	0.75	9.0	3	8;10	3	y	0.85	11.5	2	18;5	2	y	ENSMUSG00000012296.17	Tjap1	chr17	protein_coding	tight junction associated protein 1
known_NIR_8479	chr17	46624977	46625142	-	46624746	46625142	A3SS	ENSMUST00000167360.8	known	0.05	1	19	1	19	n	0.00	0	18	0	18	n	0.00	0	33	0	33	n	0.05	1	19	1	19	n	0.03	1	34	1	34	n	0.00	0	15	0	15	n	0.09	3	32	3	32	y	0.10	2	19	2	19	y	0.00	0	15	0	15	n	0.00	0	23	0	23	n	0.05	1	19	1	19	n	0.11	2	17	2	17	y	ENSMUSG00000032842.14	Abcc10	chr17	protein_coding	ATP-binding cassette, sub-family C (CFTR/MRP), member 10
known_NIR_8480	chr17	46720145	46720606	+	46720145	46731341	A3SS	ENSMUST00000138127.8	known	0.44	12	15	12	15	y	0.44	8	10	8	10	y	0.91	21	2	21	2	y	0.45	9	11	9	11	y	0.56	14	11	14	11	y	0.71	10	4	10	4	y	0.38	10	16	10	16	y	0.76	13	4	13	4	y	0.31	4	9	4	9	y	0.62	15	9	15	9	y	0.55	11	9	11	9	y	0.45	13	16	13	16	y	ENSMUSG00000015597.18	Zfp318	chr17	protein_coding	zinc finger protein 318
known_NIR_8481	chr17	46813421	46813539	-	46813421	46813614	A5SS	ENSMUST00000182315.8	known	0.71	5	2	5	2	n	1.00	6	0	6	0	n	1.00	6	0	6	0	n	0.00	0	1	0	1	n	1.00	9	0	9	0	n	0.82	9	2	9	2	y	1.00	13	0	13	0	n	0.67	4	2	4	2	n	1.00	4	0	4	0	n	1.00	3	0	3	0	n	0.50	2	2	2	2	n	0.50	2	2	2	2	n	ENSMUSG00000040327.17	Cul9	chr17	protein_coding	cullin 9
known_NIR_8482	chr17	46860438	46861827	-	46860438	46860771	5pMXE	ENSMUST00000233767.2	known	0.12	2	15	2	15	y	0.15	4	22	4	22	y	0.17	4	19	4	19	y	0.05	1	18	1	18	n	0.11	4	31	4	31	y	0.00	0	12	0	12	n	0.17	5	25	5	25	y	0.12	3	21	3	21	y	0.07	1	14	1	14	n	0.14	5	32	5	32	y	0.14	3	19	3	19	y	0.12	4	28	4	28	y	ENSMUSG00000015605.7	Srf	chr17	protein_coding	serum response factor
known_NIR_8483	chr17	46860438	46861827	-	46860438;46860962	46860771;46861827	ES	ENSMUST00000015749.7	known	0.08	2	22.0	2	15;29	y	0.14	4	25.5	4	22;29	y	0.10	4	37.0	4	19;55	y	0.05	1	20.5	1	18;23	n	0.11	4	32.5	4	31;34	y	0.00	0	16.5	0	12;21	n	0.15	5	28.0	5	25;31	y	0.14	3	18.5	3	21;16	y	0.06	1	15.5	1	14;17	n	0.13	5	34.5	5	32;37	y	0.12	3	21.0	3	19;23	y	0.12	4	28.5	4	28;29	y	ENSMUSG00000015605.7	Srf	chr17	protein_coding	serum response factor
known_NIR_8484	chr17	46955438	46956007	-	46955438	46956901	A5SS	ENSMUST00000233974.2	known	0.95	74	4	74	4	y	0.93	57	4	57	4	y	0.81	38	9	38	9	y	0.90	100	11	100	11	y	0.74	68	24	68	24	y	0.97	29	1	29	1	n	0.81	66	15	66	15	y	0.88	37	5	37	5	y	0.99	71	1	71	1	n	0.84	98	18	98	18	y	0.78	38	11	38	11	y	0.90	90	10	90	10	y	ENSMUSG00000003546.11	Klc4	chr17	protein_coding	kinesin light chain 4
known_NIR_8485	chr17	46957324	46958322	+	46957324	46958316	A3SS	ENSMUST00000002844.14	known	0.00	0	149	0	149	n	0.02	4	166	4	166	y	0.00	0	147	0	147	n	0.00	0	146	0	146	n	0.00	0	159	0	159	n	0.00	0	82	0	82	n	0.00	0	187	0	187	n	0.00	0	85	0	85	n	0.00	0	141	0	141	n	0.00	0	265	0	265	n	0.00	0	162	0	162	n	0.00	0	175	0	175	n	ENSMUSG00000002767.14	Mrpl2	chr17	protein_coding	mitochondrial ribosomal protein L2
known_NIR_8486	chr17	46959513	46959596	+	46959513	46959585	A3SS	ENSMUST00000002844.14	known	0.05	11	196	11	196	y	0.06	14	229	14	229	y	0.05	11	203	11	203	y	0.03	8	222	8	222	y	0.07	18	230	18	230	y	0.00	0	129	0	129	n	0.04	14	313	14	313	y	0.04	5	122	5	122	y	0.03	6	167	6	167	y	0.05	16	288	16	288	y	0.05	13	271	13	271	y	0.04	12	262	12	262	y	ENSMUSG00000002767.14	Mrpl2	chr17	protein_coding	mitochondrial ribosomal protein L2
known_NIR_8487	chr17	46981111	46983262	-	46981111	46985123	A5SS	ENSMUST00000233247.2	known	0.81	61	14	61	14	y	0.82	69	15	69	15	y	0.82	66	14	66	14	y	0.89	79	10	79	10	y	0.95	78	4	78	4	y	0.84	32	6	32	6	y	0.84	57	11	57	11	y	0.85	41	7	41	7	y	0.87	40	6	40	6	y	0.87	94	14	94	14	y	0.76	51	16	51	16	y	0.89	73	9	73	9	y	ENSMUSG00000023971.10	Rrp36	chr17	protein_coding	ribosomal RNA processing 36
known_NIR_8488	chr17	46981111	46983451	-	46981111;46983366	46983262;46983451	ES	ENSMUST00000233155.2	known	0.02	1	53.0	1	61;45	n	0.00	0	67.0	0	69;65	n	0.00	0	54.0	0	66;42	n	0.05	3	63.0	3	79;47	y	0.01	1	70.0	1	78;62	n	0.07	2	28.5	2	32;25	y	0.03	2	57.5	2	57;58	y	0.00	0	40.0	0	41;39	n	0.00	0	40.0	0	40;40	n	0.00	0	74.5	0	94;55	n	0.00	0	49.5	0	51;48	n	0.02	1	62.5	1	73;52	n	ENSMUSG00000023971.10	Rrp36	chr17	protein_coding	ribosomal RNA processing 36
known_NIR_8489	chr17	46981111;46983773	46983451;46985123	-	46981111	46985123	cassetteExon	ENSMUST00000233247.2	known	0.64	24.5	14	1;48	14	n	0.55	18.0	15	0;36	15	n	0.61	21.5	14	0;43	14	n	0.65	18.5	10	3;34	10	y	0.88	30.0	4	1;59	4	n	0.80	24.0	6	2;46	6	y	0.74	32.0	11	2;62	11	y	0.66	13.5	7	0;27	7	n	0.59	8.5	6	0;17	6	n	0.68	29.5	14	0;59	14	n	0.49	15.5	16	0;31	16	n	0.65	16.5	9	1;32	9	n	ENSMUSG00000023971.10	Rrp36	chr17	protein_coding	ribosomal RNA processing 36
known_NIR_8490	chr17	46987147	46987242	-	46986078	46987242	A3SS	ENSMUST00000071841.7	known	0.01	2	155	2	155	y	0.00	0	193	0	193	n	0.00	0	206	0	206	n	0.00	0	176	0	176	n	0.00	0	189	0	189	n	0.01	1	94	1	94	n	0.02	4	228	4	228	y	0.01	1	88	1	88	n	0.00	0	136	0	136	n	0.00	1	212	1	212	n	0.00	0	191	0	191	n	0.01	1	194	1	194	n	ENSMUSG00000063576.13	Klhdc3	chr17	protein_coding	kelch domain containing 3
known_NIR_8491	chr17	46989419	46991628	-	46989419;46990120	46989968;46991628	ES	ENSMUST00000071841.7	known	0.21	19	70.0	19	78;62	y	0.20	18	71.5	18	95;48	y	0.10	12	111.5	12	135;88	y	0.13	16	105.5	16	120;91	y	0.15	17	93.5	17	102;85	y	0.05	3	56.0	3	69;43	y	0.13	16	103.5	16	114;93	y	0.03	2	60.5	2	63;58	y	0.12	8	61.0	8	73;49	y	0.21	30	115.5	30	135;96	y	0.14	15	92.5	15	97;88	y	0.17	21	101.0	21	103;99	y	ENSMUSG00000063576.13	Klhdc3	chr17	protein_coding	kelch domain containing 3
known_NIR_8492	chr17	46990120	46991268	-	46990120	46991628	A5SS	ENSMUST00000071841.7	known	0.03	2	62	2	62	y	0.00	0	48	0	48	n	0.00	0	88	0	88	n	0.00	0	91	0	91	n	0.00	0	85	0	85	n	0.02	1	43	1	43	n	0.00	0	93	0	93	n	0.00	0	58	0	58	n	0.00	0	49	0	49	n	0.00	0	96	0	96	n	0.00	0	88	0	88	n	0.00	0	99	0	99	n	ENSMUSG00000063576.13	Klhdc3	chr17	protein_coding	kelch domain containing 3
known_NIR_8493	chr17	46992059	46992543	+	46992088	46992543	A5SS	ENSMUST00000233430.2	known	0.07	9	121	9	121	y	0.05	7	131	7	131	y	0.03	6	184	6	184	y	0.07	11	136	11	136	y	0.08	15	173	15	173	y	0.05	6	106	6	106	y	0.06	9	149	9	149	y	0.04	4	96	4	96	y	0.11	14	115	14	115	y	0.10	16	149	16	149	y	0.01	2	133	2	133	y	0.05	7	146	7	146	y	ENSMUSG00000002768.9	Mea1	chr17	protein_coding	male enhanced antigen 1
known_NIR_8494	chr17	46992131	46992543	+	46992059	46992543	A5SS	ENSMUST00000233491.2	known	0.55	11	9	11	9	y	0.42	5	7	5	7	y	0.67	12	6	12	6	y	0.35	6	11	6	11	y	0.53	17	15	17	15	y	0.54	7	6	7	6	y	0.53	10	9	10	9	y	0.71	10	4	10	4	y	0.36	8	14	8	14	y	0.48	15	16	15	16	y	0.67	4	2	4	2	n	0.70	16	7	16	7	y	ENSMUSG00000002768.9	Mea1	chr17	protein_coding	male enhanced antigen 1
known_NIR_8495	chr17	46992131	46992543	+	46992088	46992543	A5SS	ENSMUST00000233430.2	known	0.08	11	121	11	121	y	0.04	5	131	5	131	y	0.06	12	184	12	184	y	0.04	6	136	6	136	y	0.09	17	173	17	173	y	0.06	7	106	7	106	y	0.06	10	149	10	149	y	0.09	10	96	10	96	y	0.07	8	115	8	115	y	0.09	15	149	15	149	y	0.03	4	133	4	133	y	0.10	16	146	16	146	y	ENSMUSG00000002768.9	Mea1	chr17	protein_coding	male enhanced antigen 1
known_NIR_8496	chr17	47011075	47015759	-	47011072	47015759	A3SS	ENSMUST00000002839.9	known	0.06	1	15	1	15	n	0.13	4	27	4	27	y	0.18	6	27	6	27	y	0.10	5	45	5	45	y	0.11	6	50	6	50	y	0.32	7	15	7	15	y	0.15	7	39	7	39	y	0.11	4	34	4	34	y	0.09	3	29	3	29	y	0.14	6	37	6	37	y	0.09	3	29	3	29	y	0.18	14	62	14	62	y	ENSMUSG00000059409.10	Ppp2r5d	chr17	protein_coding	protein phosphatase 2, regulatory subunit B', delta
known_NIR_8497	chr17	47025470	47026288	+	47025470	47031254	A3SS	ENSMUST00000002840.9	known	0.01	1	146	1	146	n	0.02	3	132	3	132	y	0.00	0	133	0	133	n	0.00	0	162	0	162	n	0.00	0	163	0	163	n	0.00	0	82	0	82	n	0.00	0	182	0	182	n	0.00	0	88	0	88	n	0.00	0	108	0	108	n	0.00	0	208	0	208	n	0.01	2	176	2	176	y	0.00	0	200	0	200	n	ENSMUSG00000002763.17	Pex6	chr17	protein_coding	peroxisomal biogenesis factor 6
known_NIR_8498	chr17	47037234	47037532	-	47037337	47037532	A3SS	ENSMUST00000147112.2	known	0.02	108	5051	108	5051	y	0.02	69	3260	69	3260	y	0.02	20	1133	20	1133	y	0.02	105	5770	105	5770	y	0.02	78	4843	78	4843	y	0.01	11	1323	11	1323	y	0.02	67	4358	67	4358	y	0.01	14	1372	14	1372	y	0.02	81	4748	81	4748	y	0.02	133	5610	133	5610	y	0.01	58	5029	58	5029	y	0.01	89	10669	89	10669	y	ENSMUSG00000002769.10	Gnmt	chr17	protein_coding	glycine N-methyltransferase
known_NIR_8499	chr17	47048775	47054112	-	47048775	47062899	A5SS	ENSMUST00000129200.2	known	0.99	137	1	137	1	n	0.98	168	3	168	3	y	0.97	154	4	154	4	y	1.00	139	0	139	0	n	0.99	198	2	198	2	y	1.00	81	0	81	0	n	0.99	180	1	180	1	n	0.99	101	1	101	1	n	1.00	118	0	118	0	n	0.98	169	3	169	3	y	1.00	131	0	131	0	n	0.99	131	1	131	1	n	ENSMUSG00000023973.14	Cnpy3	chr17	protein_coding	canopy FGF signaling regulator 3
known_NIR_8500	chr17	47058126	47058347	-	47054208	47058347	A3SS	ENSMUST00000059844.13	known	0.02	3	173	3	173	y	0.05	7	146	7	146	y	0.05	7	129	7	129	y	0.01	2	153	2	153	y	0.07	15	193	15	193	y	0.01	1	96	1	96	n	0.04	7	169	7	169	y	0.05	5	98	5	98	y	0.05	5	97	5	97	y	0.06	10	158	10	158	y	0.03	4	136	4	136	y	0.06	11	160	11	160	y	ENSMUSG00000023973.14	Cnpy3	chr17	protein_coding	canopy FGF signaling regulator 3
known_NIR_8501	chr17	47058470	47062899	-	47048775	47062899	A3SS	ENSMUST00000129200.2	known	0.99	168	1	168	1	n	0.98	137	3	137	3	y	0.97	133	4	133	4	y	1.00	146	0	146	0	n	0.99	186	2	186	2	y	1.00	85	0	85	0	n	0.99	158	1	158	1	n	0.99	84	1	84	1	n	1.00	127	0	127	0	n	0.98	176	3	176	3	y	1.00	152	0	152	0	n	0.99	128	1	128	1	n	ENSMUSG00000023973.14	Cnpy3	chr17	protein_coding	canopy FGF signaling regulator 3
known_NIR_8502	chr17	47287016	47291415	-	47287016	47291246	A5SS	ENSMUST00000224759.2	known	0.33	10	20	10	20	y	0.26	5	14	5	14	y	0.30	17	39	17	39	y	0.31	14	31	14	31	y	0.29	14	34	14	34	y	0.36	10	18	10	18	y	0.21	10	37	10	37	y	0.40	17	26	17	26	y	0.35	7	13	7	13	y	0.24	12	38	12	38	y	0.12	2	15	2	15	y	0.22	11	38	11	38	y	ENSMUSG00000023977.16	Ubr2	chr17	protein_coding	ubiquitin protein ligase E3 component n-recognin 2
known_NIR_8503	chr17	47287016;47291344	47291246;47292280	-	47287016;47291513	47291415;47292280	MXE	ENSMUST00000113337.10	known	0.64	17.0	9.5	20;14	10;9	y	0.59	8.5	6.0	14;3	5;7	y	0.64	29.5	16.5	39;20	17;16	y	0.58	27.0	19.5	31;23	14;25	y	0.70	37.5	16.0	34;41	14;18	y	0.56	13.5	10.5	18;9	10;11	y	0.70	31.0	13.0	37;25	10;16	y	0.63	21.0	12.5	26;16	17;8	y	0.43	11.0	14.5	13;9	7;22	y	0.73	38.0	14.0	38;38	12;16	y	0.68	12.5	6.0	15;10	2;10	y	0.74	29.0	10.0	38;20	11;9	y	ENSMUSG00000023977.16	Ubr2	chr17	protein_coding	ubiquitin protein ligase E3 component n-recognin 2
known_NIR_8504	chr17	47679879	47683352	+	47681295	47683352	A5SS	ENSMUST00000135418.8	known	0.91	51	5	51	5	y	0.98	41	1	41	1	n	0.90	46	5	46	5	y	0.98	61	1	61	1	n	0.97	61	2	61	2	y	0.90	28	3	28	3	y	0.92	77	7	77	7	y	0.96	24	1	24	1	n	0.98	59	1	59	1	n	0.91	82	8	82	8	y	0.93	71	5	71	5	y	0.88	53	7	53	7	y	ENSMUSG00000034729.17	Mrps10	chr17	protein_coding	mitochondrial ribosomal protein S10
known_NIR_8505	chr17	47680282	47683352	+	47679879	47683352	A5SS	ENSMUST00000120737.8	known	0.00	0	51	0	51	n	0.00	0	41	0	41	n	0.08	4	46	4	46	y	0.00	0	61	0	61	n	0.00	0	61	0	61	n	0.00	0	28	0	28	n	0.00	0	77	0	77	n	0.00	0	24	0	24	n	0.00	0	59	0	59	n	0.00	0	82	0	82	n	0.00	0	71	0	71	n	0.00	0	53	0	53	n	ENSMUSG00000034729.17	Mrps10	chr17	protein_coding	mitochondrial ribosomal protein S10
known_NIR_8506	chr17	47683416	47683498	+	47683416	47683501	A3SS	ENSMUST00000120737.8	known	0.41	39	55	39	55	y	0.44	28	35	28	35	y	0.37	29	49	29	49	y	0.57	54	41	54	41	y	0.50	51	52	51	52	y	0.53	25	22	25	22	y	0.48	67	74	67	74	y	0.44	24	30	24	30	y	0.39	37	59	37	59	y	0.53	73	66	73	66	y	0.42	53	74	53	74	y	0.48	46	50	46	50	y	ENSMUSG00000034729.17	Mrps10	chr17	protein_coding	mitochondrial ribosomal protein S10
known_NIR_8507	chr17	47683416	47685898	+	47683416	47683501	A3SS	ENSMUST00000135418.8	known	0.05	3	55	3	55	y	0.08	3	35	3	35	y	0.02	1	49	1	49	n	0.07	3	41	3	41	y	0.09	5	52	5	52	y	0.08	2	22	2	22	y	0.03	2	74	2	74	y	0.00	0	30	0	30	n	0.02	1	59	1	59	n	0.15	12	66	12	66	y	0.01	1	74	1	74	n	0.04	2	50	2	50	y	ENSMUSG00000034729.17	Mrps10	chr17	protein_coding	mitochondrial ribosomal protein S10
known_NIR_8508	chr17	47683416	47685898	+	47683416;47683570	47683498;47685898	ES	ENSMUST00000119945.8	known	0.04	3	78.0	3	39;117	y	0.05	3	60.0	3	28;92	y	0.02	1	54.5	1	29;80	n	0.04	3	78.0	3	54;102	y	0.05	5	87.5	5	51;124	y	0.05	2	42.0	2	25;59	y	0.02	2	103.5	2	67;140	y	0.00	0	45.5	0	24;67	n	0.01	1	71.5	1	37;106	n	0.10	12	108.5	12	73;144	y	0.01	1	88.0	1	53;123	n	0.03	2	72.5	2	46;99	y	ENSMUSG00000034729.17	Mrps10	chr17	protein_coding	mitochondrial ribosomal protein S10
known_NIR_8509	chr17	47683416	47685898	+	47683416;47683570	47683501;47685898	ES	ENSMUST00000120737.8	known	0.03	3	86.0	3	55;117	y	0.05	3	63.5	3	35;92	y	0.02	1	64.5	1	49;80	n	0.04	3	71.5	3	41;102	y	0.05	5	88.0	5	52;124	y	0.05	2	40.5	2	22;59	y	0.02	2	107.0	2	74;140	y	0.00	0	48.5	0	30;67	n	0.01	1	82.5	1	59;106	n	0.10	12	105.0	12	66;144	y	0.01	1	98.5	1	74;123	n	0.03	2	74.5	2	50;99	y	ENSMUSG00000034729.17	Mrps10	chr17	protein_coding	mitochondrial ribosomal protein S10
known_NIR_8510	chr17	47683416	47685898	+	47683570	47685898	A5SS	ENSMUST00000136061.8	known	0.03	3	117	3	117	y	0.03	3	92	3	92	y	0.01	1	80	1	80	n	0.03	3	102	3	102	y	0.04	5	124	5	124	y	0.03	2	59	2	59	y	0.01	2	140	2	140	y	0.00	0	67	0	67	n	0.01	1	106	1	106	n	0.08	12	144	12	144	y	0.01	1	123	1	123	n	0.02	2	99	2	99	y	ENSMUSG00000034729.17	Mrps10	chr17	protein_coding	mitochondrial ribosomal protein S10
known_NIR_8511	chr17	47747719	47748191	-	47747719	47748116	A5SS	ENSMUST00000061885.9	known	0.17	6	29	6	29	y	0.00	0	16	0	16	n	0.15	2	11	2	11	y	0.09	2	20	2	20	y	0.23	7	24	7	24	y	0.30	3	7	3	7	y	0.17	7	35	7	35	y	0.44	4	5	4	5	n	0.35	7	13	7	13	y	0.19	10	44	10	44	y	0.21	6	22	6	22	y	0.11	4	33	4	33	y	ENSMUSG00000047150.9	1700001C19Rik	chr17	protein_coding	RIKEN cDNA 1700001C19 gene
known_NIR_8512	chr17	47816191;47883219	47883045;47889634	+	47816191	47889634	cassetteExon	ENSMUST00000182129.8	known	0.00	0.0	4	0;0	4	n	0.20	1.0	4	2;0	4	n	0.00	0.0	17	0;0	17	n	0.05	0.5	10	0;1	10	n	0.20	2.0	8	2;2	8	y	0.00	0.0	6	0;0	6	n	0.18	1.5	7	0;3	7	n	0.12	2.0	15	1;3	15	n	0.50	1.0	1	2;0	1	n	0.00	0.0	7	0;0	7	n	0.07	0.5	7	1;0	7	n	0.11	0.5	4	0;1	4	n	ENSMUSG00000034165.17	Ccnd3	chr17	protein_coding	cyclin D3
known_NIR_8513	chr17	47889717	47904534	+	47889698	47904534	A5SS	ENSMUST00000171031.8	known	1.00	2	0	2	0	n	-	-	-	-	-	-	0.88	7	1	7	1	n	1.00	5	0	5	0	n	1.00	5	0	5	0	n	1.00	4	0	4	0	n	1.00	1	0	1	0	n	0.73	8	3	8	3	y	-	-	-	-	-	-	1.00	8	0	8	0	n	1.00	6	0	6	0	n	1.00	3	0	3	0	n	ENSMUSG00000034165.17	Ccnd3	chr17	protein_coding	cyclin D3
known_NIR_8514	chr17	47889717	47904534	+	47889717	47904570	A3SS	ENSMUST00000182129.8	known	1.00	2	0	2	0	n	-	-	-	-	-	-	0.54	7	6	7	6	y	0.83	5	1	5	1	n	0.83	5	1	5	1	n	1.00	4	0	4	0	n	0.33	1	2	1	2	n	0.73	8	3	8	3	y	0.00	0	1	0	1	n	0.89	8	1	8	1	n	1.00	6	0	6	0	n	0.75	3	1	3	1	n	ENSMUSG00000034165.17	Ccnd3	chr17	protein_coding	cyclin D3
known_NIR_8515	chr17	47929987	47960875	+	47929987	47933810	3pMXE	ENSMUST00000024778.3	known	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.00	0	19	0	19	n	0.00	0	14	0	14	n	0.08	2	23	2	23	y	0.00	0	16	0	16	n	0.00	0	18	0	18	n	0.04	1	23	1	23	n	0.00	0	23	0	23	n	0.00	0	15	0	15	n	0.00	0	28	0	28	n	0.00	0	16	0	16	n	ENSMUSG00000092558.4	Med20	chr17	protein_coding	mediator complex subunit 20
known_NIR_8516	chr17	47990643	47991607	+	47990794	47991607	A5SS	ENSMUST00000132397.2	known	0.40	2	3	2	3	n	1.00	1	0	1	0	n	0.45	5	6	5	6	y	0.50	2	2	2	2	n	0.38	5	8	5	8	y	0.67	2	1	2	1	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.75	3	1	3	1	n	0.57	4	3	4	3	n	0.50	2	2	2	2	n	0.20	2	8	2	8	y	ENSMUSG00000023984.18	Gm20517	chr17	protein_coding	predicted gene 20517
known_NIR_8517	chr17	47997987	47998113	-	47997933	47998113	A3SS	ENSMUST00000113302.10	known	0.05	42	761	42	761	y	0.02	22	960	22	960	y	0.05	47	843	47	843	y	0.06	46	770	46	770	y	0.04	39	963	39	963	y	0.04	23	633	23	633	y	0.05	50	1060	50	1060	y	0.05	26	540	26	540	y	0.06	43	723	43	723	y	0.04	52	1171	52	1171	y	0.04	40	1039	40	1039	y	0.04	45	994	45	994	y	ENSMUSG00000033475.16	Tomm6	chr17	protein_coding	translocase of outer mitochondrial membrane 6
known_NIR_8518	chr17	48186649	48186765	-	48186613	48186765	A3SS	ENSMUST00000113265.8	known	0.13	4	26	4	26	y	0.24	10	32	10	32	y	0.13	8	55	8	55	y	0.23	8	27	8	27	y	0.17	8	39	8	39	y	0.08	3	33	3	33	y	0.27	11	30	11	30	y	0.26	10	28	10	28	y	0.10	4	36	4	36	y	0.13	5	34	5	34	y	0.26	9	25	9	25	y	0.21	9	34	9	34	y	ENSMUSG00000023991.17	Foxp4	chr17	protein_coding	forkhead box P4
known_NIR_8519	chr17	48189422	48189532	-	48189419	48189532	A3SS	ENSMUST00000113265.8	known	0.71	25	10	25	10	y	0.59	13	9	13	9	y	0.68	42	20	42	20	y	0.72	28	11	28	11	y	0.59	20	14	20	14	y	0.70	28	12	28	12	y	0.81	17	4	17	4	y	0.55	16	13	16	13	y	0.60	15	10	15	10	y	0.68	28	13	28	13	y	0.82	28	6	28	6	y	0.71	35	14	35	14	y	ENSMUSG00000023991.17	Foxp4	chr17	protein_coding	forkhead box P4
known_NIR_8520	chr17	48191268	48191695	-	48191274	48191695	A3SS	ENSMUST00000113265.8	known	0.00	0	28	0	28	n	0.00	0	24	0	24	n	0.00	0	86	0	86	n	0.00	0	50	0	50	n	0.00	0	48	0	48	n	0.00	0	44	0	44	n	0.00	0	34	0	34	n	0.03	1	32	1	32	n	0.00	0	24	0	24	n	0.06	2	33	2	33	y	0.00	0	34	0	34	n	0.00	0	32	0	32	n	ENSMUSG00000023991.17	Foxp4	chr17	protein_coding	forkhead box P4
known_NIR_8521	chr17	48571468	48571672	+	48571468	48571660	A3SS	ENSMUST00000059873.14	known	0.00	0	8	0	8	n	0.18	2	9	2	9	y	0.75	3	1	3	1	n	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	ENSMUSG00000051682.16	Treml4	chr17	protein_coding	triggering receptor expressed on myeloid cells-like 4
known_NIR_8522	chr17	48576794	48581408	+	48576794;48579846	48579717;48581408	ES	ENSMUST00000059873.14	known	0.12	1	7.5	1	7;8	n	0.00	0	10.0	0	10;10	n	0.24	2	6.5	2	3;10	y	0.00	0	6.5	0	6;7	n	0.00	0	8.0	0	9;7	n	0.00	0	5.5	0	4;7	n	0.00	0	7.5	0	5;10	n	0.11	1	8.5	1	4;13	n	0.00	0	5.5	0	4;7	n	0.00	0	6.5	0	6;7	n	0.00	0	10.5	0	9;12	n	0.00	0	5.0	0	5;5	n	ENSMUSG00000051682.16	Treml4	chr17	protein_coding	triggering receptor expressed on myeloid cells-like 4
known_NIR_8523	chr17	48576794	48581408	+	48579846	48581408	5pMXE	ENSMUST00000153131.2	known	0.11	1	8	1	8	n	0.00	0	10	0	10	n	0.17	2	10	2	10	y	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.07	1	13	1	13	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	ENSMUSG00000051682.16	Treml4	chr17	protein_coding	triggering receptor expressed on myeloid cells-like 4
known_NIR_8524	chr17	48699516	48700208	-	48699534	48700208	A3SS	ENSMUST00000078800.13	known	0.14	1	6	1	6	n	0.33	2	4	2	4	n	0.61	11	7	11	7	y	0.62	8	5	8	5	y	0.33	5	10	5	10	y	0.43	6	8	6	8	y	0.57	8	6	8	6	y	0.40	2	3	2	3	n	0.00	0	6	0	6	n	0.23	3	10	3	10	y	0.37	7	12	7	12	y	0.25	2	6	2	6	n	ENSMUSG00000023994.14	Nfya	chr17	protein_coding	nuclear transcription factor-Y alpha
known_NIR_8525	chr17	48702824	48706013	-	48702824	48706010	A5SS	ENSMUST00000078800.13	known	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.20	1	4	1	4	n	0.29	4	10	4	10	y	0.22	2	7	2	7	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.50	2	2	2	2	n	0.00	0	4	0	4	n	ENSMUSG00000023994.14	Nfya	chr17	protein_coding	nuclear transcription factor-Y alpha
known_NIR_8526	chr17	48702824	48707466	-	48702824	48706010	5pMXE	ENSMUST00000161117.8	known	0.43	3	4	3	4	n	0.36	4	7	4	7	y	0.64	7	4	7	4	y	0.29	4	10	4	10	y	0.36	4	7	4	7	y	0.50	2	2	2	2	n	0.31	5	11	5	11	y	0.50	2	2	2	2	n	1.00	9	0	9	0	n	0.62	5	3	5	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000023994.14	Nfya	chr17	protein_coding	nuclear transcription factor-Y alpha
known_NIR_8527	chr17	48702824	48707466	-	48702824;48706093	48706010;48707466	ES	ENSMUST00000078800.13	known	0.60	3	2.0	3	4;0	n	0.44	4	5.0	4	7;3	y	0.78	7	2.0	7	4;0	n	0.33	4	8.0	4	10;6	y	0.42	4	5.5	4	7;4	y	0.50	2	2.0	2	2;2	n	0.45	5	6.0	5	11;1	n	0.57	2	1.5	2	2;1	n	1.00	9	0.0	9	0;0	n	0.59	5	3.5	5	3;4	y	0.00	0	1.0	0	2;0	n	0.00	0	2.0	0	4;0	n	ENSMUSG00000023994.14	Nfya	chr17	protein_coding	nuclear transcription factor-Y alpha
known_NIR_8528	chr17	48702824;48706093	48706013;48707466	-	48702824	48707466	cassetteExon	ENSMUST00000162460.8	known	0.00	0.0	3	0;0	3	n	0.33	2.0	4	1;3	4	n	0.07	0.5	7	1;0	7	n	0.56	5.0	4	4;6	4	y	0.43	3.0	4	2;4	4	y	0.33	1.0	2	0;2	2	n	0.09	0.5	5	0;1	5	n	0.33	1.0	2	1;1	2	n	0.00	0.0	9	0;0	9	n	0.33	2.5	5	1;4	5	n	1.00	1.0	0	2;0	0	n	-	-	-	-	-	-	ENSMUSG00000023994.14	Nfya	chr17	protein_coding	nuclear transcription factor-Y alpha
known_NIR_8529	chr17	48702824;48706096	48706010;48707466	-	48702824	48707466	cassetteExon	ENSMUST00000162460.8	known	0.40	2.0	3	4;0	3	n	0.47	3.5	4	7;0	4	n	0.36	4.0	7	4;4	7	y	0.62	6.5	4	10;3	4	y	0.53	4.5	4	7;2	4	y	0.50	2.0	2	2;2	2	n	0.60	7.5	5	11;4	5	y	0.56	2.5	2	2;3	2	n	0.00	0.0	9	0;0	9	n	0.33	2.5	5	3;2	5	y	1.00	1.5	0	2;1	0	n	1.00	3.5	0	4;3	0	n	ENSMUSG00000023994.14	Nfya	chr17	protein_coding	nuclear transcription factor-Y alpha
known_NIR_8530	chr17	48702824;48706096	48706013;48707466	-	48702824	48707466	cassetteExon	ENSMUST00000162460.8	known	0.00	0.0	3	0;0	3	n	0.11	0.5	4	1;0	4	n	0.26	2.5	7	1;4	7	n	0.47	3.5	4	4;3	4	y	0.33	2.0	4	2;2	4	n	0.33	1.0	2	0;2	2	n	0.29	2.0	5	0;4	5	n	0.50	2.0	2	1;3	2	n	0.00	0.0	9	0;0	9	n	0.23	1.5	5	1;2	5	n	1.00	1.5	0	2;1	0	n	1.00	1.5	0	0;3	0	n	ENSMUSG00000023994.14	Nfya	chr17	protein_coding	nuclear transcription factor-Y alpha
known_NIR_8531	chr17	48717265	48717856	+	48717400	48717856	A5SS	ENSMUST00000167180.8	known	0.19	11	46	11	46	y	0.40	20	30	20	30	y	0.45	18	22	18	22	y	0.29	16	40	16	40	y	0.29	14	35	14	35	y	0.46	13	15	13	15	y	0.32	24	52	24	52	y	0.52	11	10	11	10	y	0.34	16	31	16	31	y	0.25	15	45	15	45	y	0.16	7	36	7	36	y	0.22	12	43	12	43	y	ENSMUSG00000040771.15	Oard1	chr17	protein_coding	O-acyl-ADP-ribose deacylase 1
known_NIR_8532	chr17	49735592	49742123	+	49735592;49740324	49740198;49742123	ES	ENSMUST00000165390.9	known	0.05	7	145.0	7	134;156	y	0.03	4	112.5	4	104;121	y	0.01	3	201.5	3	167;236	y	0.01	2	180.5	2	167;194	y	0.01	1	193.0	1	157;229	n	0.00	0	134.5	0	132;137	n	0.01	2	219.0	2	200;238	y	0.00	0	122.5	0	111;134	n	0.01	2	157.5	2	116;199	y	0.01	2	206.0	2	190;222	y	0.01	1	164.5	1	153;176	n	0.02	4	188.5	4	168;209	y	ENSMUSG00000064120.15	Mocs1	chr17	protein_coding	molybdenum cofactor synthesis 1
known_NIR_8533	chr17	49735592	49742123	+	49740324	49742123	5pMXE	ENSMUST00000174268.2	known	0.04	7	156	7	156	y	0.03	4	121	4	121	y	0.01	3	236	3	236	y	0.01	2	194	2	194	y	0.00	1	229	1	229	n	0.00	0	137	0	137	n	0.01	2	238	2	238	y	0.00	0	134	0	134	n	0.01	2	199	2	199	y	0.01	2	222	2	222	y	0.01	1	176	1	176	n	0.02	4	209	4	209	y	ENSMUSG00000064120.15	Mocs1	chr17	protein_coding	molybdenum cofactor synthesis 1
known_NIR_8534	chr17	49742290	49746450	+	49742290	49744739	3pMXE	ENSMUST00000165390.9	known	1.00	184	0	184	0	n	0.99	194	1	194	1	n	1.00	265	0	265	0	n	1.00	215	0	215	0	n	1.00	290	0	290	0	n	1.00	166	0	166	0	n	1.00	258	0	258	0	n	0.99	163	2	163	2	y	1.00	199	0	199	0	n	0.99	291	2	291	2	y	1.00	227	0	227	0	n	1.00	256	0	256	0	n	ENSMUSG00000064120.15	Mocs1	chr17	protein_coding	molybdenum cofactor synthesis 1
known_NIR_8535	chr17	49759870	49761058	+	49759885	49761058	A5SS	ENSMUST00000024797.16	known	0.25	57	174	57	174	y	0.29	71	176	71	176	y	0.13	38	245	38	245	y	0.28	72	183	72	183	y	0.23	60	197	60	197	y	0.18	30	138	30	138	y	0.28	76	196	76	196	y	0.18	30	139	30	139	y	0.29	77	192	77	192	y	0.23	88	295	88	295	y	0.23	68	228	68	228	y	0.21	62	231	62	231	y	ENSMUSG00000064120.15	Mocs1	chr17	protein_coding	molybdenum cofactor synthesis 1
known_NIR_8536	chr17	51089452;51103019	51102954;51106895	-	51089452	51106895	cassetteExon	ENSMUST00000024717.10	known	0.29	2.0	5	2;2	5	n	0.00	0.0	3	0;0	3	n	0.00	0.0	12	0;0	12	n	0.18	1.5	7	1;2	7	n	0.03	0.5	17	1;0	17	n	0.00	0.0	10	0;0	10	n	0.07	1.0	14	1;1	14	n	0.00	0.0	12	0;0	12	n	0.23	1.5	5	2;1	5	n	0.23	3.5	12	3;4	12	y	0.12	1.0	7	0;2	7	n	0.00	0.0	11	0;0	11	n	ENSMUSG00000023923.11	Tbc1d5	chr17	protein_coding	TBC1 domain family, member 5
known_NIR_8537	chr17	51226269	51227543	-	51226240	51227543	A3SS	ENSMUST00000024717.10	known	0.00	0	20	0	20	n	0.15	2	11	2	11	y	0.00	0	23	0	23	n	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.00	0	8	0	8	n	0.00	0	21	0	21	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	16	0	16	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	ENSMUSG00000023923.11	Tbc1d5	chr17	protein_coding	TBC1 domain family, member 5
known_NIR_8538	chr17	51261142	51270721	-	51242586	51270721	A3SS	ENSMUST00000024717.10	known	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	16	0	16	n	0.17	2	10	2	10	y	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.00	0	17	0	17	n	ENSMUSG00000023923.11	Tbc1d5	chr17	protein_coding	TBC1 domain family, member 5
known_NIR_8539	chr17	53970677	53972681	+	53970677;53972470	53972434;53972681	ES	ENSMUST00000000724.15	known	0.00	0	70.5	0	69;72	n	0.00	0	48.5	0	51;46	n	0.00	0	96.5	0	100;93	n	0.00	0	95.5	0	94;97	n	0.01	1	104.5	1	118;91	n	0.00	0	44.5	0	41;48	n	0.00	0	95.0	0	95;95	n	0.00	0	58.0	0	57;59	n	0.02	2	86.5	2	88;85	y	0.02	3	141.0	3	148;134	y	0.06	5	83.5	5	81;86	y	0.02	3	118.0	3	127;109	y	ENSMUSG00000000708.15	Kat2b	chr17	protein_coding	K(lysine) acetyltransferase 2B
known_NIR_8540	chr17	5483025	5483717	-	5461742	5483717	A3SS	ENSMUST00000005053.14	known	0.01	3	224	3	224	y	0.01	2	195	2	195	y	0.01	1	169	1	169	n	0.01	1	197	1	197	n	0.00	0	266	0	266	n	0.01	1	127	1	127	n	0.01	2	309	2	309	y	0.00	0	132	0	132	n	0.01	2	181	2	181	y	0.01	3	283	3	283	y	0.02	5	241	5	241	y	0.00	0	215	0	215	n	ENSMUSG00000004945.16	Tmem242	chr17	protein_coding	transmembrane protein 242
known_NIR_8541	chr17	56013152;56016086	56015998;56017839	-	56013152	56017839	cassetteExon	ENSMUST00000233802.2	known	0.20	1.0	4	0;2	4	n	0.78	3.5	1	3;4	1	n	0.33	0.5	1	0;1	1	n	0.00	0.0	4	0;0	4	n	0.50	1.0	1	2;0	1	n	0.50	1.0	1	0;2	1	n	0.26	2.5	7	2;3	7	y	0.40	2.0	3	1;3	3	n	1.00	1.0	0	0;2	0	n	0.40	2.0	3	3;1	3	n	0.60	1.5	1	0;3	1	n	1.00	3.0	0	2;4	0	n	ENSMUSG00000024174.10	Pot1b	chr17	protein_coding	protection of telomeres 1B
known_NIR_8542	chr17	56199186	56202821	+	56199186;56199860	56199758;56202821	ES	ENSMUST00000224379.2	known	0.64	9	5.0	9	2;8	y	0.71	6	2.5	6	1;4	n	0.33	4	8.0	4	6;10	y	0.36	4	7.0	4	3;11	y	0.38	7	11.5	7	6;17	y	0.38	3	5.0	3	2;8	y	0.32	4	8.5	4	2;15	y	0.31	2	4.5	2	4;5	y	0.56	7	5.5	7	1;10	n	0.42	7	9.5	7	14;5	y	0.20	2	8.0	2	2;14	y	0.30	3	7.0	3	0;14	n	ENSMUSG00000003198.11	Zfp959	chr17	protein_coding	zinc finger protein 959
known_NIR_8543	chr17	56199186	56202821	+	56199860	56202821	5pMXE	ENSMUST00000224294.2	known	0.53	9	8	9	8	y	0.60	6	4	6	4	y	0.29	4	10	4	10	y	0.27	4	11	4	11	y	0.29	7	17	7	17	y	0.27	3	8	3	8	y	0.21	4	15	4	15	y	0.29	2	5	2	5	n	0.41	7	10	7	10	y	0.58	7	5	7	5	y	0.12	2	14	2	14	y	0.18	3	14	3	14	y	ENSMUSG00000003198.11	Zfp959	chr17	protein_coding	zinc finger protein 959
known_NIR_8544	chr17	56316586	56317277	+	56312814	56317277	A5SS	ENSMUST00000133998.8	known	1.00	160	0	160	0	n	1.00	178	0	178	0	n	0.98	154	3	154	3	y	1.00	212	0	212	0	n	0.99	259	2	259	2	y	1.00	135	0	135	0	n	1.00	283	0	283	0	n	1.00	137	0	137	0	n	1.00	176	0	176	0	n	1.00	306	0	306	0	n	1.00	238	0	238	0	n	1.00	269	0	269	0	n	ENSMUSG00000003199.17	Mpnd	chr17	protein_coding	MPN domain containing
known_NIR_8545	chr17	56319492	56322028	+	56319492	56321941	A3SS	ENSMUST00000149441.8	known	0.00	0	356	0	356	n	0.02	7	445	7	445	y	0.01	2	310	2	310	y	0.00	0	352	0	352	n	0.00	0	460	0	460	n	0.00	0	232	0	232	n	0.00	0	466	0	466	n	0.00	0	227	0	227	n	0.00	0	325	0	325	n	0.00	0	537	0	537	n	0.01	5	397	5	397	y	0.00	0	482	0	482	n	ENSMUSG00000003199.17	Mpnd	chr17	protein_coding	MPN domain containing
known_NIR_8546	chr17	56324900	56325575	-	56324900;56325107	56324983;56325575	ES	ENSMUST00000003268.11	known	0.00	0	53.5	0	67;40	n	0.00	0	54.5	0	71;38	n	0.00	0	49.5	0	55;44	n	0.00	0	56.0	0	63;49	n	0.00	0	76.5	0	85;68	n	0.00	0	36.0	0	36;36	n	0.00	0	54.5	0	58;51	n	0.00	0	29.0	0	37;21	n	0.00	0	41.0	0	50;32	n	0.00	0	57.5	0	59;56	n	0.04	2	54.0	2	64;44	y	0.00	0	44.5	0	60;29	n	ENSMUSG00000003200.11	Sh3gl1	chr17	protein_coding	SH3-domain GRB2-like 1
known_NIR_8547	chr17	56377254	56377652	-	56376775	56377652	A3SS	ENSMUST00000019722.12	known	0.02	2	113	2	113	y	0.00	0	161	0	161	n	0.00	0	195	0	195	n	0.00	0	129	0	129	n	0.00	0	229	0	229	n	0.00	0	101	0	101	n	0.01	2	236	2	236	y	0.02	2	93	2	93	y	0.01	1	131	1	131	n	0.00	0	231	0	231	n	0.00	0	155	0	155	n	0.00	0	194	0	194	n	ENSMUSG00000019578.12	Ubxn6	chr17	protein_coding	UBX domain protein 6
known_NIR_8548	chr17	56380236	56381424	-	56380236	56381836	A5SS	ENSMUST00000019722.12	known	0.01	1	123	1	123	n	0.00	0	93	0	93	n	0.03	4	145	4	145	y	0.00	0	108	0	108	n	0.00	0	181	0	181	n	0.05	4	75	4	75	y	0.00	0	150	0	150	n	0.00	0	82	0	82	n	0.01	1	79	1	79	n	0.00	0	167	0	167	n	0.01	1	106	1	106	n	0.01	2	141	2	141	y	ENSMUSG00000019578.12	Ubxn6	chr17	protein_coding	UBX domain protein 6
known_NIR_8549	chr17	56403276	56403821	+	56403276	56403848	A3SS	ENSMUST00000226053.2	known	0.45	14	17	14	17	y	0.38	12	20	12	20	y	0.50	15	15	15	15	y	0.44	17	22	17	22	y	0.37	13	22	13	22	y	0.41	11	16	11	16	y	0.19	6	25	6	25	y	0.41	7	10	7	10	y	0.30	8	19	8	19	y	0.29	10	25	10	25	y	0.39	16	25	16	25	y	0.56	15	12	15	12	y	ENSMUSG00000002833.12	Hdgfl2	chr17	protein_coding	HDGF like 2
known_NIR_8550	chr17	56403276	56403821	+	56403276	56403851	A3SS	ENSMUST00000002911.10	known	0.78	14	4	14	4	y	0.86	12	2	12	2	y	0.79	15	4	15	4	y	0.77	17	5	17	5	y	0.62	13	8	13	8	y	0.73	11	4	11	4	y	0.40	6	9	6	9	y	0.70	7	3	7	3	y	0.67	8	4	8	4	y	0.77	10	3	10	3	y	0.80	16	4	16	4	y	0.83	15	3	15	3	y	ENSMUSG00000002833.12	Hdgfl2	chr17	protein_coding	HDGF like 2
known_NIR_8551	chr17	56403276	56403851	+	56403276	56403848	A3SS	ENSMUST00000226053.2	known	0.19	4	17	4	17	y	0.09	2	20	2	20	y	0.21	4	15	4	15	y	0.19	5	22	5	22	y	0.27	8	22	8	22	y	0.20	4	16	4	16	y	0.26	9	25	9	25	y	0.23	3	10	3	10	y	0.17	4	19	4	19	y	0.11	3	25	3	25	y	0.14	4	25	4	25	y	0.20	3	12	3	12	y	ENSMUSG00000002833.12	Hdgfl2	chr17	protein_coding	HDGF like 2
known_NIR_8552	chr17	56406985	56407348	+	56406985	56407345	A3SS	ENSMUST00000226053.2	known	0.24	20	65	20	65	y	0.28	29	73	29	73	y	0.36	21	38	21	38	y	0.30	21	50	21	50	y	0.32	37	78	37	78	y	0.18	7	32	7	32	y	0.23	22	75	22	75	y	0.18	10	45	10	45	y	0.29	11	27	11	27	y	0.32	29	61	29	61	y	0.30	25	59	25	59	y	0.31	25	56	25	56	y	ENSMUSG00000002833.12	Hdgfl2	chr17	protein_coding	HDGF like 2
known_NIR_8553	chr17	56489715	56490311	-	56489715	56490739	A5SS	ENSMUST00000019723.8	known	0.01	2	389	2	389	y	0.00	1	377	1	377	n	0.00	0	400	0	400	n	0.00	0	356	0	356	n	0.00	1	487	1	487	n	0.01	2	246	2	246	y	0.00	0	418	0	418	n	0.00	0	257	0	257	n	0.00	0	304	0	304	n	0.00	0	427	0	427	n	0.00	0	370	0	370	n	0.00	1	338	1	338	n	ENSMUSG00000019579.14	Mydgf	chr17	protein_coding	myeloid derived growth factor
known_NIR_8554	chr17	56496465	56496990	-	56496465;56496880	56496762;56496990	ES	ENSMUST00000223616.2	known	0.94	138	9.0	138	7;11	y	0.96	174	7.5	174	6;9	y	0.94	399	26.0	399	27;25	y	0.98	90	2.0	90	0;4	n	0.95	194	11.0	194	9;13	y	0.92	135	12.0	135	7;17	y	0.94	157	10.0	157	9;11	y	0.91	122	12.5	122	8;17	y	0.87	73	10.5	73	10;11	y	0.97	122	3.5	122	3;4	y	0.97	113	3.5	113	4;3	y	0.97	127	3.5	127	1;6	n	ENSMUSG00000001229.10	Dpp9	chr17	protein_coding	dipeptidylpeptidase 9
known_NIR_8555	chr17	56633229	56658633	+	56633229;56651442	56651334;56658633	ES	ENSMUST00000139679.8	known	0.57	2	1.5	2	1;2	n	0.40	1	1.5	1	2;1	n	0.73	15	5.5	15	5;6	y	0.46	3	3.5	3	5;2	y	0.64	14	8.0	14	7;9	y	0.53	4	3.5	4	5;2	y	0.63	6	3.5	6	2;5	y	0.29	2	5.0	2	5;5	y	0.60	3	2.0	3	2;2	n	0.46	3	3.5	3	4;3	y	0.71	6	2.5	6	2;3	y	0.92	6	0.5	6	1;0	n	ENSMUSG00000024201.13	Kdm4b	chr17	protein_coding	lysine (K)-specific demethylase 4B
known_NIR_8556	chr17	56701106	56701790	+	56701106	56701769	A3SS	ENSMUST00000025036.11	known	0.43	3	4	3	4	n	0.50	5	5	5	5	y	0.24	5	16	5	16	y	0.25	3	9	3	9	y	0.37	7	12	7	12	y	0.00	0	3	0	3	n	0.25	2	6	2	6	n	0.56	5	4	5	4	n	0.10	1	9	1	9	n	0.44	4	5	4	5	n	0.28	5	13	5	13	y	0.10	2	18	2	18	y	ENSMUSG00000024201.13	Kdm4b	chr17	protein_coding	lysine (K)-specific demethylase 4B
known_NIR_8557	chr17	56701889	56703222	+	56701889	56703204	A3SS	ENSMUST00000025036.11	known	0.33	3	6	3	6	n	0.20	1	4	1	4	n	0.12	3	22	3	22	y	0.40	2	3	2	3	n	0.00	0	13	0	13	n	0.17	2	10	2	10	y	0.11	1	8	1	8	n	0.08	1	12	1	12	n	0.00	0	4	0	4	n	0.27	4	11	4	11	y	0.25	4	12	4	12	y	0.23	3	10	3	10	y	ENSMUSG00000024201.13	Kdm4b	chr17	protein_coding	lysine (K)-specific demethylase 4B
known_NIR_8558	chr17	56870243	56870362	-	56868206	56870362	A3SS	ENSMUST00000142752.8	known	1.00	106	0	106	0	n	0.98	89	2	89	2	y	1.00	80	0	80	0	n	0.97	58	2	58	2	y	0.99	121	1	121	1	n	1.00	57	0	57	0	n	1.00	93	0	93	0	n	0.96	47	2	47	2	y	1.00	41	0	41	0	n	1.00	105	0	105	0	n	1.00	87	0	87	0	n	0.99	82	1	82	1	n	ENSMUSG00000042625.17	Safb2	chr17	protein_coding	scaffold attachment factor B2
known_NIR_8559	chr17	56874015	56874533	-	56874018	56874533	A3SS	ENSMUST00000144255.8	known	0.89	96	12	96	12	y	0.88	77	11	77	11	y	0.93	100	7	100	7	y	0.93	100	8	100	8	y	0.89	135	16	135	16	y	0.91	42	4	42	4	y	0.91	105	10	105	10	y	0.95	70	4	70	4	y	0.95	80	4	80	4	y	0.95	114	6	114	6	y	0.88	65	9	65	9	y	0.93	114	9	114	9	y	ENSMUSG00000042625.17	Safb2	chr17	protein_coding	scaffold attachment factor B2
known_NIR_8560	chr17	56878549;56881302	56881202;56881903	-	56878549	56881903	cassetteExon	ENSMUST00000144255.8	known	0.96	69.5	3	69;70	3	y	0.96	51.5	2	66;37	2	y	0.99	77.5	1	82;73	1	n	0.97	77.5	2	87;68	2	y	0.96	76.0	3	81;71	3	y	1.00	42.5	0	57;28	0	n	0.99	71.0	1	77;65	1	n	1.00	55.0	0	70;40	0	n	0.98	63.5	1	70;57	1	n	0.96	82.5	3	105;60	3	y	0.98	58.0	1	73;43	1	n	0.94	84.0	5	98;70	5	y	ENSMUSG00000042625.17	Safb2	chr17	protein_coding	scaffold attachment factor B2
known_NIR_8561	chr17	56881952	56882355	-	56881952	56883878	A5SS	ENSMUST00000144255.8	known	0.91	52	5	52	5	y	0.95	40	2	40	2	y	0.88	43	6	43	6	y	0.86	48	8	48	8	y	0.80	44	11	44	11	y	0.88	23	3	23	3	y	1.00	50	0	50	0	n	0.78	25	7	25	7	y	0.85	41	7	41	7	y	0.94	47	3	47	3	y	1.00	26	0	26	0	n	0.88	43	6	43	6	y	ENSMUSG00000042625.17	Safb2	chr17	protein_coding	scaffold attachment factor B2
known_NIR_8562	chr17	56881952	56883878	-	56881952;56883012	56882355;56883878	ES	ENSMUST00000075510.12	known	0.11	5	42.5	5	52;33	y	0.07	2	27.5	2	40;15	y	0.14	6	38.0	6	43;33	y	0.20	8	32.5	8	48;17	y	0.23	11	37.0	11	44;30	y	0.16	3	15.5	3	23;8	y	0.00	0	33.5	0	50;17	n	0.26	7	19.5	7	25;14	y	0.19	7	30.5	7	41;20	y	0.07	3	38.5	3	47;30	y	0.00	0	24.5	0	26;23	n	0.15	6	34.0	6	43;25	y	ENSMUSG00000042625.17	Safb2	chr17	protein_coding	scaffold attachment factor B2
known_NIR_8563	chr17	56883012	56883878	-	56881952	56883878	A3SS	ENSMUST00000144255.8	known	0.87	33	5	33	5	y	0.88	15	2	15	2	y	0.85	33	6	33	6	y	0.68	17	8	17	8	y	0.73	30	11	30	11	y	0.73	8	3	8	3	y	1.00	17	0	17	0	n	0.67	14	7	14	7	y	0.74	20	7	20	7	y	0.91	30	3	30	3	y	1.00	23	0	23	0	n	0.81	25	6	25	6	y	ENSMUSG00000042625.17	Safb2	chr17	protein_coding	scaffold attachment factor B2
known_NIR_8564	chr17	56884905	56885641	-	56884905	56885637	A5SS	ENSMUST00000144255.8	known	0.91	53	5	53	5	y	0.87	54	8	54	8	y	0.84	38	7	38	7	y	0.81	34	8	34	8	y	0.79	41	11	41	11	y	0.88	23	3	23	3	y	0.85	34	6	34	6	y	0.88	23	3	23	3	y	0.75	27	9	27	9	y	0.90	54	6	54	6	y	0.81	39	9	39	9	y	0.74	40	14	40	14	y	ENSMUSG00000042625.17	Safb2	chr17	protein_coding	scaffold attachment factor B2
known_NIR_8565	chr17	56884905	56885693	-	56884905	56885637	A5SS	ENSMUST00000144255.8	known	0.38	3	5	3	5	n	0.20	2	8	2	8	y	0.00	0	7	0	7	n	0.20	2	8	2	8	y	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	ENSMUSG00000042625.17	Safb2	chr17	protein_coding	scaffold attachment factor B2
known_NIR_8566	chr17	56884905	56885693	-	56884905	56885641	A5SS	ENSMUST00000075510.12	known	0.05	3	53	3	53	y	0.04	2	54	2	54	y	0.00	0	38	0	38	n	0.06	2	34	2	34	y	0.00	0	41	0	41	n	0.00	0	23	0	23	n	0.00	0	34	0	34	n	0.00	0	23	0	23	n	0.00	0	27	0	27	n	0.00	0	54	0	54	n	0.00	0	39	0	39	n	0.00	0	40	0	40	n	ENSMUSG00000042625.17	Safb2	chr17	protein_coding	scaffold attachment factor B2
known_NIR_8567	chr17	56904815	56905644	+	56904815	56906623	A3SS	ENSMUST00000182951.8	known	0.77	36	11	36	11	y	0.76	28	9	28	9	y	0.77	48	14	48	14	y	0.88	37	5	37	5	y	0.82	42	9	42	9	y	0.79	30	8	30	8	y	0.82	47	10	47	10	y	0.86	30	5	30	5	y	0.88	43	6	43	6	y	0.93	40	3	40	3	y	0.93	28	2	28	2	y	0.96	52	2	52	2	y	ENSMUSG00000071054.13	Safb	chr17	protein_coding	scaffold attachment factor B
known_NIR_8568	chr17	56904815	56906623	+	56904815;56906220	56905644;56906623	ES	ENSMUST00000182533.8	known	0.17	11	53.0	11	36;70	y	0.23	9	30.5	9	28;33	y	0.19	14	60.5	14	48;73	y	0.10	5	44.0	5	37;51	y	0.15	9	50.5	9	42;59	y	0.22	8	28.5	8	30;27	y	0.16	10	54.0	10	47;61	y	0.15	5	28.0	5	30;26	y	0.14	6	37.0	6	43;31	y	0.05	3	55.5	3	40;71	y	0.06	2	34.0	2	28;40	y	0.04	2	49.5	2	52;47	y	ENSMUSG00000071054.13	Safb	chr17	protein_coding	scaffold attachment factor B
known_NIR_8569	chr17	56906220	56906623	+	56904815	56906623	A5SS	ENSMUST00000182951.8	known	0.86	70	11	70	11	y	0.79	33	9	33	9	y	0.84	73	14	73	14	y	0.91	51	5	51	5	y	0.87	59	9	59	9	y	0.77	27	8	27	8	y	0.86	61	10	61	10	y	0.84	26	5	26	5	y	0.84	31	6	31	6	y	0.96	71	3	71	3	y	0.95	40	2	40	2	y	0.96	47	2	47	2	y	ENSMUSG00000071054.13	Safb	chr17	protein_coding	scaffold attachment factor B
known_NIR_8570	chr17	56907971	56908056	+	56907971	56908048	A3SS	ENSMUST00000182533.8	known	0.00	0	99	0	99	n	0.02	2	85	2	85	y	0.02	3	127	3	127	y	0.00	0	109	0	109	n	0.00	0	137	0	137	n	0.00	0	68	0	68	n	0.00	0	109	0	109	n	0.00	0	78	0	78	n	0.00	0	79	0	79	n	0.05	7	143	7	143	y	0.00	0	99	0	99	n	0.00	0	128	0	128	n	ENSMUSG00000071054.13	Safb	chr17	protein_coding	scaffold attachment factor B
known_NIR_8571	chr17	56912399	56912557	+	56912399	56912551	A3SS	ENSMUST00000182533.8	known	0.90	88	10	88	10	y	0.87	92	14	92	14	y	0.85	105	18	105	18	y	0.86	75	12	75	12	y	0.84	115	22	115	22	y	0.93	55	4	55	4	y	0.89	108	14	108	14	y	0.87	58	9	58	9	y	0.88	64	9	64	9	y	0.83	106	22	106	22	y	0.88	75	10	75	10	y	0.86	92	15	92	15	y	ENSMUSG00000071054.13	Safb	chr17	protein_coding	scaffold attachment factor B
known_NIR_8572	chr17	56915715	56915846	-	56915692	56915846	A3SS	ENSMUST00000052832.6	known	0.01	4	655	4	655	y	0.01	4	620	4	620	y	0.00	1	695	1	695	n	0.00	2	664	2	664	y	0.00	2	888	2	888	y	0.00	0	475	0	475	n	0.00	2	885	2	885	y	0.00	0	453	0	453	n	0.00	2	654	2	654	y	0.01	6	868	6	868	y	0.00	1	711	1	711	n	0.00	0	807	0	807	n	ENSMUSG00000049760.7	Micos13	chr17	protein_coding	mitochondrial contact site and cristae organizing system subunit 13
known_NIR_8573	chr17	56916023	56916640	-	56916023	56916157	5pMXE	ENSMUST00000233103.2	known	1.00	549	2	549	2	y	1.00	574	0	574	0	n	1.00	595	1	595	1	n	0.99	536	5	536	5	y	1.00	718	1	718	1	n	1.00	407	0	407	0	n	0.99	733	4	733	4	y	1.00	392	1	392	1	n	1.00	539	2	539	2	y	1.00	693	3	693	3	y	0.99	595	3	595	3	y	0.99	683	4	683	4	y	ENSMUSG00000049760.7	Micos13	chr17	protein_coding	mitochondrial contact site and cristae organizing system subunit 13
known_NIR_8574	chr17	56916023	56916640	-	56916332	56916640	A3SS	ENSMUST00000233299.2	known	1.00	549	0	549	0	n	1.00	574	2	574	2	y	1.00	595	2	595	2	y	0.99	536	4	536	4	y	1.00	718	0	718	0	n	1.00	407	0	407	0	n	1.00	733	0	733	0	n	1.00	392	0	392	0	n	1.00	539	0	539	0	n	1.00	693	0	693	0	n	0.99	595	3	595	3	y	1.00	683	0	683	0	n	ENSMUSG00000049760.7	Micos13	chr17	protein_coding	mitochondrial contact site and cristae organizing system subunit 13
known_NIR_8575	chr17	56916023;56916332	56916157;56916640	-	56916023	56916640	cassetteExon	ENSMUST00000052832.6	known	0.00	1.0	549	2;0	549	n	0.00	1.0	574	0;2	574	n	0.00	1.5	595	1;2	595	n	0.01	4.5	536	5;4	536	y	0.00	0.5	718	1;0	718	n	0.00	0.0	407	0;0	407	n	0.00	2.0	733	4;0	733	n	0.00	0.5	392	1;0	392	n	0.00	1.0	539	2;0	539	n	0.00	1.5	693	3;0	693	n	0.01	3.0	595	3;3	595	y	0.00	2.0	683	4;0	683	n	ENSMUSG00000049760.7	Micos13	chr17	protein_coding	mitochondrial contact site and cristae organizing system subunit 13
known_NIR_8576	chr17	56993061	56998745	+	56993061	57003602	A3SS	ENSMUST00000232975.2	known	0.16	3	16	3	16	y	0.00	0	25	0	25	n	0.14	4	24	4	24	y	0.03	1	35	1	35	n	0.02	1	58	1	58	n	0.00	0	21	0	21	n	0.08	2	22	2	22	y	0.07	2	25	2	25	y	0.06	2	29	2	29	y	0.06	2	33	2	33	y	0.00	0	33	0	33	n	0.11	5	42	5	42	y	ENSMUSG00000002372.10	Ranbp3	chr17	protein_coding	RAN binding protein 3
known_NIR_8577	chr17	56993061;56998882	56998745;56999521	+	56993061	56999521	cassetteExon	ENSMUST00000233319.2	known	0.14	2.0	12	3;1	12	n	0.40	2.0	3	0;4	3	n	0.44	5.5	7	4;7	7	y	0.09	0.5	5	1;0	5	n	0.06	1.0	17	1;1	17	n	0.25	1.0	3	0;2	3	n	0.09	1.0	10	2;0	10	n	0.13	1.5	10	2;1	10	n	0.25	2.0	6	2;2	6	y	0.17	2.0	10	2;2	10	y	0.00	0.0	3	0;0	3	n	0.36	4.0	7	5;3	7	y	ENSMUSG00000002372.10	Ranbp3	chr17	protein_coding	RAN binding protein 3
known_NIR_8578	chr17	56993061;56999721	56999521;57003602	+	56993061	57003602	cassetteExon	ENSMUST00000232975.2	known	0.44	12.5	16	12;13	16	y	0.24	8.0	25	3;13	25	y	0.26	8.5	24	7;10	24	y	0.22	10.0	35	5;15	35	y	0.27	21.0	58	17;25	58	y	0.30	9.0	21	3;15	21	y	0.42	16.0	22	10;22	22	y	0.30	10.5	25	10;11	25	y	0.22	8.0	29	6;10	29	y	0.35	18.0	33	10;26	33	y	0.16	6.5	33	3;10	33	y	0.23	12.5	42	7;18	42	y	ENSMUSG00000002372.10	Ranbp3	chr17	protein_coding	RAN binding protein 3
known_NIR_8579	chr17	57022817	57024598	-	57022817	57023634	5pMXE	ENSMUST00000067931.7	known	0.50	12	12	12	12	y	0.29	5	12	5	12	y	0.23	5	17	5	17	y	0.29	4	10	4	10	y	0.34	10	19	10	19	y	0.42	5	7	5	7	y	0.40	6	9	6	9	y	0.27	7	19	7	19	y	0.67	14	7	14	7	y	0.27	11	30	11	30	y	0.40	12	18	12	18	y	0.48	15	16	15	16	y	ENSMUSG00000054723.7	Vmac	chr17	protein_coding	vimentin-type intermediate filament associated coiled-coil protein
known_NIR_8580	chr17	57022817	57024873	-	57022817	57023634	5pMXE	ENSMUST00000067931.7	known	0.20	3	12	3	12	y	0.00	0	12	0	12	n	0.19	4	17	4	17	y	0.00	0	10	0	10	n	0.00	0	19	0	19	n	0.30	3	7	3	7	y	0.00	0	9	0	9	n	0.00	0	19	0	19	n	0.00	0	7	0	7	n	0.00	0	30	0	30	n	0.00	0	18	0	18	n	0.06	1	16	1	16	n	ENSMUSG00000054723.7	Vmac	chr17	protein_coding	vimentin-type intermediate filament associated coiled-coil protein
known_NIR_8581	chr17	57022817	57024873	-	57022817	57024598	5pMXE	ENSMUST00000164907.3	known	0.20	3	12	3	12	y	0.00	0	5	0	5	n	0.44	4	5	4	5	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.38	3	5	3	5	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.06	1	15	1	15	n	ENSMUSG00000054723.7	Vmac	chr17	protein_coding	vimentin-type intermediate filament associated coiled-coil protein
known_NIR_8582	chr17	57022817;57023800	57023634;57024598	-	57022817	57024598	cassetteExon	ENSMUST00000164907.3	known	0.33	6.0	12	12;0	12	n	0.55	6.0	5	12;0	5	n	0.63	8.5	5	17;0	5	n	0.60	6.0	4	10;2	4	y	0.52	11.0	10	19;3	10	y	0.41	3.5	5	7;0	5	n	0.43	4.5	6	9;0	6	n	0.58	9.5	7	19;0	7	n	0.22	4.0	14	7;1	14	n	0.58	15.0	11	30;0	11	n	0.43	9.0	12	18;0	12	n	0.35	8.0	15	16;0	15	n	ENSMUSG00000054723.7	Vmac	chr17	protein_coding	vimentin-type intermediate filament associated coiled-coil protein
known_NIR_8583	chr17	57028127	57028359	+	57028127	57028319	A3SS	ENSMUST00000002452.8	known	0.08	33	395	33	395	y	0.07	36	456	36	456	y	0.04	19	431	19	431	y	0.08	35	406	35	406	y	0.06	33	513	33	513	y	0.08	25	278	25	278	y	0.07	45	565	45	565	y	0.05	12	253	12	253	y	0.04	18	396	18	396	y	0.07	51	629	51	629	y	0.08	50	542	50	542	y	0.06	29	454	29	454	y	ENSMUSG00000002379.8	Ndufa11	chr17	protein_coding	NADH:ubiquinone oxidoreductase subunit A11
known_NIR_8584	chr17	57207296	57212712	-	57207296;57209688	57209563;57212712	ES	ENSMUST00000025053.10	known	0.00	0	21.5	0	29;14	n	0.00	0	14.5	0	19;10	n	0.03	1	32.0	1	35;29	n	0.05	1	21.0	1	20;22	n	0.00	0	36.0	0	37;35	n	0.00	0	14.5	0	14;15	n	0.04	1	21.5	1	19;24	n	0.00	0	21.5	0	23;20	n	0.05	1	19.5	1	22;17	n	0.00	0	22.0	0	22;22	n	0.00	0	18.0	0	19;17	n	0.14	3	18.5	3	21;16	y	ENSMUSG00000024212.10	Mllt1	chr17	protein_coding	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1
known_NIR_8585	chr17	57304567;57305562	57305389;57305671	+	57304567	57305671	cassetteExon	ENSMUST00000074141.14	known	0.97	69.5	2	69;70	2	y	0.98	59.0	1	47;71	1	n	1.00	36.5	0	37;36	0	n	0.97	56.5	2	47;66	2	y	1.00	85.0	0	81;89	0	n	1.00	25.0	0	22;28	0	n	1.00	65.5	0	70;61	0	n	1.00	28.5	0	28;29	0	n	0.95	53.0	3	44;62	3	y	1.00	72.5	0	77;68	0	n	0.97	70.0	2	56;84	2	y	0.99	82.0	1	88;76	1	n	ENSMUSG00000002661.15	Alkbh7	chr17	protein_coding	alkB homolog 7
known_NIR_8586	chr17	57352640	57354186	-	57352663	57354186	A3SS	ENSMUST00000040280.14	known	0.02	10	490	10	490	y	0.02	6	367	6	367	y	0.01	2	220	2	220	y	0.00	0	553	0	553	n	0.02	14	845	14	845	y	0.04	7	170	7	170	y	0.03	17	641	17	641	y	0.02	5	284	5	284	y	0.01	4	442	4	442	y	0.01	9	759	9	759	y	0.02	8	493	8	493	y	0.01	6	646	6	646	y	ENSMUSG00000046329.15	Slc25a23	chr17	protein_coding	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23
known_NIR_8587	chr17	57359840	57360241	-	57359849	57360241	A3SS	ENSMUST00000040280.14	known	0.03	14	476	14	476	y	0.02	6	344	6	344	y	0.03	6	195	6	195	y	0.03	16	522	16	522	y	0.02	19	824	19	824	y	0.00	0	143	0	143	n	0.02	15	651	15	651	y	0.02	7	306	7	306	y	0.01	5	406	5	406	y	0.03	21	671	21	671	y	0.00	0	467	0	467	n	0.02	15	640	15	640	y	ENSMUSG00000046329.15	Slc25a23	chr17	protein_coding	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23
known_NIR_8588	chr17	57360662	57360784	-	57360699	57360784	A3SS	ENSMUST00000040280.14	known	0.03	15	497	15	497	y	0.00	0	374	0	374	n	0.00	1	227	1	227	n	0.01	9	593	9	593	y	0.00	0	845	0	845	n	0.02	3	190	3	190	y	0.00	0	669	0	669	n	0.01	2	316	2	316	y	0.00	0	450	0	450	n	0.00	0	749	0	749	n	0.02	11	471	11	471	y	0.01	7	567	7	567	y	ENSMUSG00000046329.15	Slc25a23	chr17	protein_coding	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23
known_NIR_8589	chr17	57360955	57362274	-	57360942	57362274	A3SS	ENSMUST00000040280.14	known	0.00	0	484	0	484	n	0.00	1	411	1	411	n	0.01	4	277	4	277	y	0.00	2	628	2	628	y	0.01	5	917	5	917	y	0.01	2	227	2	227	y	0.00	2	670	2	670	y	0.00	1	313	1	313	n	0.00	2	504	2	504	y	0.00	4	821	4	821	y	0.00	1	545	1	545	n	0.00	3	687	3	687	y	ENSMUSG00000046329.15	Slc25a23	chr17	protein_coding	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23
known_NIR_8590	chr17	57369373	57369595	+	57369228	57369595	A5SS	ENSMUST00000071826.10	known	0.91	40	4	40	4	y	0.86	32	5	32	5	y	0.92	36	3	36	3	y	1.00	23	0	23	0	n	0.94	51	3	51	3	y	0.93	28	2	28	2	y	0.93	25	2	25	2	y	1.00	26	0	26	0	n	0.90	18	2	18	2	y	0.96	52	2	52	2	y	0.91	29	3	29	3	y	1.00	29	0	29	0	n	ENSMUSG00000044279.16	Crb3	chr17	protein_coding	crumbs family member 3
known_NIR_8591	chr17	57370675	57372090	+	57370698	57372090	A5SS	ENSMUST00000071826.10	known	0.03	2	67	2	67	y	0.04	3	66	3	66	y	0.07	5	65	5	65	y	0.03	2	76	2	76	y	0.05	4	73	4	73	y	0.00	0	40	0	40	n	0.01	1	80	1	80	n	0.06	3	51	3	51	y	0.00	0	67	0	67	n	0.04	5	111	5	111	y	0.03	2	63	2	63	y	0.03	3	93	3	93	y	ENSMUSG00000044279.16	Crb3	chr17	protein_coding	crumbs family member 3
known_NIR_8592	chr17	57525940	57526966	-	57525940	57526540	A5SS&ES	ENSMUST00000024988.15	known	0.00	0	13983	0	13983	n	0.00	0	11532	0	11532	n	0.00	2	29269	2	29269	y	0.00	0	16338	0	16338	n	0.00	2	34797	2	34797	y	0.00	0	21168	0	21168	n	0.00	0	22636	0	22636	n	0.00	0	22055	0	22055	n	0.00	0	9993	0	9993	n	0.00	0	16665	0	16665	n	0.00	0	10773	0	10773	n	0.00	2	18666	2	18666	y	ENSMUSG00000024164.16	C3	chr17	protein_coding	complement component 3
known_NIR_8593	chr17	57550113	57551247	-	57550134	57551247	A3SS	ENSMUST00000233568.2	known	0.36	15	27	15	27	y	0.32	15	32	15	32	y	0.52	15	14	15	14	y	0.49	28	29	28	29	y	0.45	30	37	30	37	y	0.46	11	13	11	13	y	0.38	21	34	21	34	y	0.40	12	18	12	18	y	0.46	19	22	19	22	y	0.35	17	32	17	32	y	0.32	11	23	11	23	y	0.46	25	29	25	29	y	ENSMUSG00000005823.10	Gpr108	chr17	protein_coding	G protein-coupled receptor 108
known_NIR_8594	chr17	57553883	57555107	-	57553883	57554511	5pMXE	ENSMUST00000233568.2	known	0.15	5	29	5	29	y	0.00	0	23	0	23	n	0.00	0	26	0	26	n	0.00	0	28	0	28	n	0.03	1	38	1	38	n	0.00	0	23	0	23	n	0.00	0	30	0	30	n	0.00	0	18	0	18	n	0.00	0	31	0	31	n	0.00	0	37	0	37	n	0.02	1	43	1	43	n	0.00	0	25	0	25	n	ENSMUSG00000005823.10	Gpr108	chr17	protein_coding	G protein-coupled receptor 108
known_NIR_8595	chr17	57556571	57557704	+	57556571	57557742	A3SS	ENSMUST00000224947.2	known	0.00	0	11	0	11	n	0.15	2	11	2	11	y	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.00	0	22	0	22	n	0.00	0	7	0	7	n	0.00	0	45	0	45	n	0.00	0	6	0	6	n	0.20	2	8	2	8	y	0.00	0	16	0	16	n	0.00	0	5	0	5	n	0.00	0	21	0	21	n	ENSMUSG00000019487.12	Trip10	chr17	protein_coding	thyroid hormone receptor interactor 10
known_NIR_8596	chr17	57562467	57564235	+	57564027	57564235	5pMXE	ENSMUST00000224261.2	known	1.00	10	0	10	0	n	1.00	16	0	16	0	n	0.70	14	6	14	6	y	1.00	11	0	11	0	n	0.90	19	2	19	2	y	1.00	5	0	5	0	n	0.51	23	22	23	22	y	0.87	13	2	13	2	y	1.00	8	0	8	0	n	1.00	33	0	33	0	n	1.00	12	0	12	0	n	1.00	21	0	21	0	n	ENSMUSG00000019487.12	Trip10	chr17	protein_coding	thyroid hormone receptor interactor 10
known_NIR_8597	chr17	57562467;57564027	57563860;57564235	+	57562467	57564235	cassetteExon	ENSMUST00000224947.2	known	0.00	0.0	10	0;0	10	n	0.03	0.5	16	1;0	16	n	0.18	3.0	14	0;6	14	n	0.00	0.0	11	0;0	11	n	0.05	1.0	19	0;2	19	n	0.00	0.0	5	0;0	5	n	0.45	19.0	23	16;22	23	y	0.13	2.0	13	2;2	13	y	0.00	0.0	8	0;0	8	n	0.00	0.0	33	0;0	33	n	0.00	0.0	12	0;0	12	n	0.00	0.0	21	0;0	21	n	ENSMUSG00000019487.12	Trip10	chr17	protein_coding	thyroid hormone receptor interactor 10
known_NIR_8598	chr17	57568788	57569357	+	57568788	57569354	A3SS	ENSMUST00000224947.2	known	0.58	15	11	15	11	y	0.58	15	11	15	11	y	0.48	16	17	16	17	y	0.50	8	8	8	8	y	0.54	15	13	15	13	y	0.69	9	4	9	4	y	0.69	34	15	34	15	y	0.73	16	6	16	6	y	0.53	9	8	9	8	y	0.79	22	6	22	6	y	0.61	11	7	11	7	y	0.70	19	8	19	8	y	ENSMUSG00000019487.12	Trip10	chr17	protein_coding	thyroid hormone receptor interactor 10
known_NIR_8599	chr17	57709861	57713834	+	57668734	57713834	A5SS	ENSMUST00000233376.2	known	0.95	19	1	19	1	n	1.00	13	0	13	0	n	1.00	6	0	6	0	n	1.00	10	0	10	0	n	0.93	14	1	14	1	n	1.00	5	0	5	0	n	0.94	17	1	17	1	n	1.00	3	0	3	0	n	1.00	9	0	9	0	n	1.00	8	0	8	0	n	1.00	11	0	11	0	n	0.80	8	2	8	2	y	ENSMUSG00000004730.16	Adgre1	chr17	protein_coding	adhesion G protein-coupled receptor E1
known_NIR_8600	chr17	6058374	6060007	+	6058385	6060007	A5SS	ENSMUST00000115791.10	known	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.29	4	10	4	10	y	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000023805.18	Synj2	chr17	protein_coding	synaptojanin 2
known_NIR_8601	chr17	6117935	6121028	-	6117935;6119663	6119574;6121028	ES	ENSMUST00000097432.10	known	0.33	1	2.0	1	0;4	n	0.80	2	0.5	2	1;0	n	0.67	2	1.0	2	2;0	n	0.38	4	6.5	4	5;8	y	0.00	0	1.5	0	0;3	n	0.00	0	1.0	0	0;2	n	0.75	3	1.0	3	1;1	n	0.00	0	2.0	0	3;1	n	0.46	3	3.5	3	5;2	y	0.50	1	1.0	1	1;1	n	0.57	2	1.5	2	1;2	n	0.20	1	4.0	1	6;2	n	ENSMUSG00000015659.13	Serac1	chr17	protein_coding	serine active site containing 1
known_NIR_8602	chr17	6130349	6131077	+	6130186	6131077	A5SS	ENSMUST00000039487.10	known	0.07	12	148	12	148	y	0.08	11	119	11	119	y	0.10	18	159	18	159	y	0.09	13	125	13	125	y	0.09	16	168	16	168	y	0.04	4	106	4	106	y	0.04	6	164	6	164	y	0.08	8	90	8	90	y	0.08	11	127	11	127	y	0.12	20	151	20	151	y	0.11	19	150	19	150	y	0.09	14	142	14	142	y	ENSMUSG00000034345.15	Gtf2h5	chr17	protein_coding	general transcription factor IIH, polypeptide 5
known_NIR_8603	chr17	6157271	6187486	+	6157271	6172103	3pMXE	ENSMUST00000146758.8	known	0.27	6	16	6	16	y	0.08	1	11	1	11	n	0.23	6	20	6	20	y	0.50	10	10	10	10	y	0.14	4	25	4	25	y	0.19	3	13	3	13	y	0.28	5	13	5	13	y	0.40	6	9	6	9	y	0.14	1	6	1	6	n	0.33	9	18	9	18	y	0.30	3	7	3	7	y	0.26	8	23	8	23	y	ENSMUSG00000034377.11	Tulp4	chr17	protein_coding	tubby like protein 4
known_NIR_8604	chr17	6157271	6227104	+	6157271	6172103	3pMXE	ENSMUST00000146758.8	known	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.09	2	20	2	20	y	0.00	0	10	0	10	n	0.00	0	25	0	25	n	0.13	2	13	2	13	y	0.07	1	13	1	13	n	0.18	2	9	2	9	y	0.14	1	6	1	6	n	0.05	1	18	1	18	n	0.12	1	7	1	7	n	0.04	1	23	1	23	n	ENSMUSG00000034377.11	Tulp4	chr17	protein_coding	tubby like protein 4
known_NIR_8605	chr17	6168641	6172103	+	6157271	6172103	A5SS	ENSMUST00000146758.8	known	0.00	0	16	0	16	n	0.15	2	11	2	11	y	0.09	2	20	2	20	y	0.09	1	10	1	10	n	0.17	5	25	5	25	y	0.19	3	13	3	13	y	0.00	0	13	0	13	n	0.10	1	9	1	9	n	0.33	3	6	3	6	n	0.10	2	18	2	18	y	0.00	0	7	0	7	n	0.15	4	23	4	23	y	ENSMUSG00000034377.11	Tulp4	chr17	protein_coding	tubby like protein 4
known_NIR_8606	chr17	6172619	6174446	+	6172619	6187486	A3SS	ENSMUST00000149838.8	known	0.91	10	1	10	1	n	1.00	17	0	17	0	n	0.87	13	2	13	2	y	1.00	12	0	12	0	n	0.93	13	1	13	1	n	1.00	5	0	5	0	n	1.00	14	0	14	0	n	1.00	6	0	6	0	n	1.00	12	0	12	0	n	0.93	14	1	14	1	n	1.00	12	0	12	0	n	1.00	17	0	17	0	n	ENSMUSG00000034377.11	Tulp4	chr17	protein_coding	tubby like protein 4
known_NIR_8607	chr17	6189431	6227104	+	6157271	6227104	A5SS	ENSMUST00000149756.8	known	1.00	13	0	13	0	n	1.00	8	0	8	0	n	0.93	25	2	25	2	y	1.00	24	0	24	0	n	1.00	23	0	23	0	n	0.85	11	2	11	2	y	0.92	12	1	12	1	n	0.89	17	2	17	2	y	0.90	9	1	9	1	n	0.95	19	1	19	1	n	0.88	7	1	7	1	n	0.96	26	1	26	1	n	ENSMUSG00000034377.11	Tulp4	chr17	protein_coding	tubby like protein 4
known_NIR_8608	chr17	62914458	62920832	-	62914458;62920391	62920311;62920832	ES	ENSMUST00000076840.12	known	-	-	-	-	-	-	0.00	0	2.5	0	4;1	n	0.00	0	4.5	0	3;6	n	0.25	1	3.0	1	4;2	n	0.42	5	7.0	5	6;8	y	0.00	0	3.5	0	7;0	n	0.31	2	4.5	2	3;6	y	0.22	1	3.5	1	3;4	n	0.00	0	1.0	0	0;2	n	0.38	5	8.0	5	6;10	y	0.00	0	2.0	0	2;2	n	0.00	0	3.5	0	5;2	n	ENSMUSG00000048915.13	Efna5	chr17	protein_coding	ephrin A5
known_NIR_8609	chr17	63797882	63799684	-	63797882	63806020	A5SS	ENSMUST00000024761.13	known	0.00	0	22	0	22	n	0.00	0	14	0	14	n	0.05	3	57	3	57	y	0.00	0	40	0	40	n	0.02	2	86	2	86	y	0.00	0	40	0	40	n	0.00	0	46	0	46	n	0.00	0	55	0	55	n	0.00	0	45	0	45	n	0.00	0	58	0	58	n	0.00	0	37	0	37	n	0.00	0	62	0	62	n	ENSMUSG00000023965.14	Fbxl17	chr17	protein_coding	F-box and leucine-rich repeat protein 17
known_NIR_8610	chr17	64248475	64248578	+	64248475	64280060	A3SS	ENSMUST00000232945.2	known	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	22	0	22	n	0.00	0	17	0	17	n	0.25	3	9	3	9	y	0.00	0	15	0	15	n	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.00	0	17	0	17	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.15	4	23	4	23	y	ENSMUSG00000000127.16	Fer	chr17	protein_coding	fer (fms/fps related) protein kinase
known_NIR_8611	chr17	64280152	64288475	+	64280152	64288478	A3SS	ENSMUST00000232945.2	known	0.42	5	7	5	7	y	0.44	8	10	8	10	y	0.77	23	7	23	7	y	0.67	8	4	8	4	y	0.53	9	8	9	8	y	0.80	8	2	8	2	y	0.64	9	5	9	5	y	0.78	7	2	7	2	n	0.70	7	3	7	3	y	0.62	8	5	8	5	y	0.55	6	5	6	5	y	0.55	11	9	11	9	y	ENSMUSG00000000127.16	Fer	chr17	protein_coding	fer (fms/fps related) protein kinase
known_NIR_8612	chr17	64600019	64615617	-	64600019;64604904	64604719;64615617	ES	ENSMUST00000172818.8	known	0.33	12	24.0	12	25;23	y	0.28	9	23.5	9	22;25	y	0.16	13	70.0	13	71;69	y	0.30	17	39.0	17	33;45	y	0.24	14	44.5	14	55;34	y	0.35	15	27.5	15	37;18	y	0.38	28	45.5	28	46;45	y	0.24	11	34.0	11	41;27	y	0.37	14	23.5	14	25;22	y	0.45	18	22.0	18	14;30	y	0.23	7	23.0	7	33;13	y	0.36	23	41.5	23	43;40	y	ENSMUSG00000024083.17	Pja2	chr17	protein_coding	praja ring finger ubiquitin ligase 2
known_NIR_8613	chr17	64600019	64615617	-	64604904	64615617	3pMXE	ENSMUST00000232842.2	known	0.34	12	23	12	23	y	0.26	9	25	9	25	y	0.16	13	69	13	69	y	0.27	17	45	17	45	y	0.29	14	34	14	34	y	0.45	15	18	15	18	y	0.38	28	45	28	45	y	0.29	11	27	11	27	y	0.39	14	22	14	22	y	0.38	18	30	18	30	y	0.35	7	13	7	13	y	0.37	23	40	23	40	y	ENSMUSG00000024083.17	Pja2	chr17	protein_coding	praja ring finger ubiquitin ligase 2
known_NIR_8614	chr17	65889748;65894161	65894039;65899286	-	65889748	65899286	cassetteExon	ENSMUST00000024897.10	known	0.02	5.0	283	5;5	283	y	0.02	6.5	273	5;8	273	y	0.01	2.0	357	0;4	357	n	0.02	4.5	290	2;7	290	y	0.02	8.5	372	4;13	372	y	0.02	4.5	196	2;7	196	y	0.01	4.5	380	0;9	380	n	0.01	1.5	171	0;3	171	n	0.02	4.0	244	0;8	244	n	0.01	5.0	383	0;10	383	n	0.02	6.0	306	6;6	306	y	0.02	7.5	330	6;9	330	y	ENSMUSG00000024091.10	Vapa	chr17	protein_coding	vesicle-associated membrane protein, associated protein A
known_NIR_8615	chr17	66090444	66090619	+	66090014	66090619	A5SS	ENSMUST00000161127.8	known	0.67	2	1	2	1	n	0.80	4	1	4	1	n	0.77	10	3	10	3	y	0.63	12	7	12	7	y	0.85	11	2	11	2	y	0.71	5	2	5	2	n	0.91	10	1	10	1	n	0.71	5	2	5	2	n	0.50	1	1	1	1	n	0.71	10	4	10	4	y	1.00	7	0	7	0	n	0.46	6	7	6	7	y	ENSMUSG00000061950.18	Ppp4r1	chr17	protein_coding	protein phosphatase 4, regulatory subunit 1
known_NIR_8616	chr17	66090663	66110206	+	66090663	66110155	A3SS	ENSMUST00000161324.8	known	0.71	12	5	12	5	y	0.73	11	4	11	4	y	0.83	20	4	20	4	y	0.67	18	9	18	9	y	0.65	11	6	11	6	y	0.50	7	7	7	7	y	0.81	13	3	13	3	y	0.33	5	10	5	10	y	0.67	4	2	4	2	n	0.56	14	11	14	11	y	0.50	7	7	7	7	y	0.38	8	13	8	13	y	ENSMUSG00000061950.18	Ppp4r1	chr17	protein_coding	protein phosphatase 4, regulatory subunit 1
known_NIR_8617	chr17	66136542;66136985	66136866;66137992	+	66136542	66137992	cassetteExon	ENSMUST00000073104.11	known	0.08	2.0	24	0;4	24	n	0.04	1.0	25	0;2	25	n	0.09	4.5	45	1;8	45	n	0.04	1.5	36	0;3	36	n	0.03	1.5	53	2;1	53	n	0.03	1.0	33	0;2	33	n	0.08	2.5	28	1;4	28	n	0.07	2.0	27	0;4	27	n	0.06	1.5	22	0;3	22	n	0.12	5.0	38	2;8	38	y	0.04	1.0	22	0;2	22	n	0.03	1.0	38	0;2	38	n	ENSMUSG00000061950.18	Ppp4r1	chr17	protein_coding	protein phosphatase 4, regulatory subunit 1
known_NIR_8618	chr17	66161194	66165968	-	66161194;66164788	66164657;66165968	ES	ENSMUST00000024905.11	known	0.04	2	48.0	2	55;41	y	0.07	2	27.0	2	20;34	y	0.02	1	61.0	1	64;58	n	0.02	1	46.5	1	38;55	n	0.00	0	66.0	0	63;69	n	0.03	1	39.0	1	40;38	n	0.00	0	60.0	0	64;56	n	0.03	1	31.5	1	24;39	n	0.06	2	32.0	2	31;33	y	0.03	2	55.5	2	58;53	y	0.05	2	41.0	2	43;39	y	0.05	2	39.5	2	46;33	y	ENSMUSG00000024096.18	Ralbp1	chr17	protein_coding	ralA binding protein 1
known_NIR_8619	chr17	66164788	66168251	-	66164788;66166129	66165968;66168251	ES	ENSMUST00000024905.11	known	0.00	0	44.5	0	41;48	n	0.00	0	37.0	0	34;40	n	0.00	0	55.5	0	58;53	n	0.00	0	51.0	0	55;47	n	0.00	0	65.5	0	69;62	n	0.04	2	46.0	2	38;54	y	0.00	0	62.0	0	56;68	n	0.00	0	38.5	0	39;38	n	0.00	0	39.5	0	33;46	n	0.00	0	48.5	0	53;44	n	0.00	0	37.5	0	39;36	n	0.00	0	34.5	0	33;36	n	ENSMUSG00000024096.18	Ralbp1	chr17	protein_coding	ralA binding protein 1
known_NIR_8620	chr17	66174825	66191217	-	66174825	66191673	A5SS	ENSMUST00000024905.11	known	0.00	0	6	0	6	n	0.00	0	20	0	20	n	0.03	1	36	1	36	n	0.00	0	24	0	24	n	0.06	2	29	2	29	y	0.15	3	17	3	17	y	0.00	0	38	0	38	n	0.05	1	18	1	18	n	0.00	0	13	0	13	n	0.00	0	22	0	22	n	0.09	1	10	1	10	n	0.00	0	16	0	16	n	ENSMUSG00000024096.18	Ralbp1	chr17	protein_coding	ralA binding protein 1
known_NIR_8621	chr17	66174825	66191217	-	66174825	66192181	A5SS	ENSMUST00000166543.10	known	0.00	0	1	0	1	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.17	2	10	2	10	y	0.50	3	3	3	3	n	0.00	0	8	0	8	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.20	1	4	1	4	n	-	-	-	-	-	-	ENSMUSG00000024096.18	Ralbp1	chr17	protein_coding	ralA binding protein 1
known_NIR_8622	chr17	66174825	66192181	-	66174825	66191673	5pMXE	ENSMUST00000024905.11	known	0.14	1	6	1	6	n	0.00	0	20	0	20	n	0.08	3	36	3	36	y	0.11	3	24	3	24	y	0.26	10	29	10	29	y	0.15	3	17	3	17	y	0.17	8	38	8	38	y	0.14	3	18	3	18	y	0.07	1	13	1	13	n	0.00	0	22	0	22	n	0.29	4	10	4	10	y	0.00	0	16	0	16	n	ENSMUSG00000024096.18	Ralbp1	chr17	protein_coding	ralA binding protein 1
known_NIR_8623	chr17	66233153	66233252	-	66230033	66233252	A3SS	ENSMUST00000233580.2	known	0.33	1	2	1	2	n	1.00	1	0	1	0	n	0.46	6	7	6	7	y	1.00	1	0	1	0	n	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	2	0	2	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000024098.7	Twsg1	chr17	protein_coding	twisted gastrulation BMP signaling modulator 1
known_NIR_8624	chr17	66418726	66420858	+	66418644	66420858	A5SS	ENSMUST00000072383.14	known	0.19	4	17	4	17	y	0.12	3	21	3	21	y	0.00	0	24	0	24	n	0.26	6	17	6	17	y	0.42	15	21	15	21	y	0.08	1	12	1	12	n	0.59	17	12	17	12	y	0.18	3	14	3	14	y	0.39	7	11	7	11	y	0.42	10	14	10	14	y	0.46	6	7	6	7	y	0.29	6	15	6	15	y	ENSMUSG00000024101.16	Washc1	chr17	protein_coding	WASH complex subunit 1
known_NIR_8625	chr17	66418896	66420858	+	66418644	66420858	A5SS	ENSMUST00000072383.14	known	0.00	0	17	0	17	n	0.00	0	21	0	21	n	0.08	2	24	2	24	y	0.00	0	17	0	17	n	0.09	2	21	2	21	y	0.00	0	12	0	12	n	0.20	3	12	3	12	y	0.12	2	14	2	14	y	0.00	0	11	0	11	n	0.12	2	14	2	14	y	0.30	3	7	3	7	y	0.00	0	15	0	15	n	ENSMUSG00000024101.16	Washc1	chr17	protein_coding	WASH complex subunit 1
known_NIR_8626	chr17	66418896	66420858	+	66418726	66420858	A5SS	ENSMUST00000116556.4	known	0.00	0	4	0	4	n	0.00	0	3	0	3	n	1.00	2	0	2	0	n	0.00	0	6	0	6	n	0.12	2	15	2	15	y	0.00	0	1	0	1	n	0.15	3	17	3	17	y	0.40	2	3	2	3	n	0.00	0	7	0	7	n	0.17	2	10	2	10	y	0.33	3	6	3	6	n	0.00	0	6	0	6	n	ENSMUSG00000024101.16	Washc1	chr17	protein_coding	WASH complex subunit 1
known_NIR_8627	chr17	66443489	66445086	+	66443489	66445082	A3SS	ENSMUST00000163605.3	known	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	16	0	16	n	0.27	4	11	4	11	y	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	ENSMUSG00000035842.11	Ddx11	chr17	protein_coding	DEAD/H box helicase 11
known_NIR_8628	chr17	66807443;66812173	66811984;66813028	-	66807443	66813028	cassetteExon	ENSMUST00000167962.2	known	0.00	0.0	55	0;0	55	n	0.05	2.0	35	1;3	35	n	0.05	3.0	60	4;2	60	y	0.02	1.5	59	2;1	59	n	0.04	3.0	82	3;3	82	y	0.04	1.0	26	2;0	26	n	0.02	3.0	118	5;1	118	n	0.02	1.0	47	2;0	47	n	0.03	1.0	35	2;0	35	n	0.03	2.0	74	2;2	74	y	0.01	0.5	50	0;1	50	n	0.03	2.0	58	2;2	58	y	ENSMUSG00000023460.14	Rab12	chr17	protein_coding	RAB12, member RAS oncogene family
known_NIR_8629	chr17	69594332	69595846	+	69594332	69594607	3pMXE	ENSMUST00000233509.2	known	0.50	2	2	2	2	n	1.00	8	0	8	0	n	1.00	3	0	3	0	n	1.00	1	0	1	0	n	0.82	9	2	9	2	y	-	-	-	-	-	-	1.00	5	0	5	0	n	-	-	-	-	-	-	1.00	3	0	3	0	n	1.00	1	0	1	0	n	0.67	2	1	2	1	n	1.00	2	0	2	0	n	ENSMUSG00000024044.20	Epb41l3	chr17	protein_coding	erythrocyte membrane protein band 4.1 like 3
known_NIR_8630	chr17	69690415	69692416	+	69690264	69692416	A5SS	ENSMUST00000112674.8	known	0.80	4	1	4	1	n	-	-	-	-	-	-	0.67	2	1	2	1	n	0.83	5	1	5	1	n	0.80	4	1	4	1	n	1.00	2	0	2	0	n	0.86	6	1	6	1	n	1.00	3	0	3	0	n	0.33	1	2	1	2	n	0.67	4	2	4	2	n	0.50	6	6	6	6	y	0.50	3	3	3	3	n	ENSMUSG00000049672.16	Zbtb14	chr17	protein_coding	zinc finger and BTB domain containing 14
known_NIR_8631	chr17	69691220	69692416	+	69690264	69692416	A5SS	ENSMUST00000112674.8	known	0.80	4	1	4	1	n	1.00	5	0	5	0	n	0.90	9	1	9	1	n	0.93	13	1	13	1	n	0.86	6	1	6	1	n	1.00	6	0	6	0	n	0.86	6	1	6	1	n	1.00	10	0	10	0	n	0.80	8	2	8	2	y	0.87	13	2	13	2	y	0.33	3	6	3	6	n	0.67	6	3	6	3	n	ENSMUSG00000049672.16	Zbtb14	chr17	protein_coding	zinc finger and BTB domain containing 14
known_NIR_8632	chr17	69691220	69692416	+	69690415	69692416	A5SS	ENSMUST00000062369.14	known	0.50	4	4	4	4	n	1.00	5	0	5	0	n	0.82	9	2	9	2	y	0.72	13	5	13	5	y	0.60	6	4	6	4	y	0.75	6	2	6	2	n	0.50	6	6	6	6	y	0.77	10	3	10	3	y	0.89	8	1	8	1	n	0.76	13	4	13	4	y	0.33	3	6	3	6	n	0.67	6	3	6	3	n	ENSMUSG00000049672.16	Zbtb14	chr17	protein_coding	zinc finger and BTB domain containing 14
known_NIR_8633	chr17	70385418;70513340	70513232;70615042	+	70385418	70615042	cassetteExon	ENSMUST00000133983.8	known	1.00	4.0	0	8;0	0	n	0.33	1.5	3	3;0	3	n	0.75	6.0	2	6;6	2	y	1.00	1.5	0	2;1	0	n	0.60	1.5	1	1;2	1	n	0.00	0.0	2	0;0	2	n	1.00	1.0	0	0;2	0	n	1.00	1.0	0	2;0	0	n	1.00	4.0	0	4;4	0	n	1.00	5.5	0	6;5	0	n	0.80	4.0	1	5;3	1	n	0.47	3.5	4	2;5	4	y	ENSMUSG00000003279.18	Dlgap1	chr17	protein_coding	DLG associated protein 1
known_NIR_8634	chr17	71152235	71153167	-	71152267	71153167	A3SS	ENSMUST00000172229.8	known	0.00	0	35	0	35	n	0.00	0	18	0	18	n	0.06	5	81	5	81	y	0.04	2	49	2	49	y	0.00	0	60	0	60	n	0.00	0	21	0	21	n	0.00	0	28	0	28	n	0.00	0	23	0	23	n	0.00	0	37	0	37	n	0.00	0	50	0	50	n	0.00	0	53	0	53	n	0.00	0	56	0	56	n	ENSMUSG00000047407.18	Tgif1	chr17	protein_coding	TGFB-induced factor homeobox 1
known_NIR_8635	chr17	71153393	71156179	-	71153393	71157867	A5SS	ENSMUST00000059775.15	known	0.00	0	19	0	19	n	0.00	0	17	0	17	n	0.00	0	39	0	39	n	0.03	1	37	1	37	n	0.02	1	48	1	48	n	0.11	2	17	2	17	y	0.00	0	32	0	32	n	0.00	0	18	0	18	n	0.00	0	23	0	23	n	0.00	0	28	0	28	n	0.03	1	30	1	30	n	0.00	0	47	0	47	n	ENSMUSG00000047407.18	Tgif1	chr17	protein_coding	TGFB-induced factor homeobox 1
known_NIR_8636	chr17	71153393	71157867	-	71153393	71156635	5pMXE	ENSMUST00000172229.8	known	1.00	19	0	19	0	n	1.00	17	0	17	0	n	1.00	39	0	39	0	n	0.97	37	1	37	1	n	1.00	48	0	48	0	n	0.89	17	2	17	2	y	1.00	32	0	32	0	n	0.86	18	3	18	3	y	1.00	23	0	23	0	n	0.93	28	2	28	2	y	0.88	30	4	30	4	y	1.00	47	0	47	0	n	ENSMUSG00000047407.18	Tgif1	chr17	protein_coding	TGFB-induced factor homeobox 1
known_NIR_8637	chr17	71153393	71160443	-	71153393	71157867	5pMXE	ENSMUST00000059775.15	known	0.10	2	19	2	19	y	0.06	1	17	1	17	n	0.00	0	39	0	39	n	0.03	1	37	1	37	n	0.00	0	48	0	48	n	0.00	0	17	0	17	n	0.06	2	32	2	32	y	0.10	2	18	2	18	y	0.00	0	23	0	23	n	0.03	1	28	1	28	n	0.00	0	30	0	30	n	0.02	1	47	1	47	n	ENSMUSG00000047407.18	Tgif1	chr17	protein_coding	TGFB-induced factor homeobox 1
known_NIR_8638	chr17	71281491	71303105	-	71281491	71282454	5pMXE	ENSMUST00000137537.2	known	0.00	1	298	1	298	n	0.00	0	346	0	346	n	0.01	2	344	2	344	y	0.01	3	326	3	326	y	0.00	1	427	1	427	n	0.00	1	201	1	201	n	0.00	0	438	0	438	n	0.00	0	216	0	216	n	0.00	0	306	0	306	n	0.00	0	454	0	454	n	0.00	0	324	0	324	n	0.00	0	394	0	394	n	ENSMUSG00000034868.10	Myl12b	chr17	protein_coding	myosin, light chain 12B, regulatory
known_NIR_8639	chr17	71301779	71303105	-	71281491	71303105	A3SS	ENSMUST00000233417.2	known	0.99	140	1	140	1	n	1.00	158	0	158	0	n	0.99	245	2	245	2	y	0.97	115	3	115	3	y	1.00	206	1	206	1	n	0.99	116	1	116	1	n	1.00	303	0	303	0	n	1.00	113	0	113	0	n	1.00	121	0	121	0	n	1.00	195	0	195	0	n	1.00	153	0	153	0	n	1.00	159	0	159	0	n	ENSMUSG00000117098.2	Gm49909	chr17	protein_coding	predicted gene, 49909
known_NIR_8640	chr17	71303890	71304880	-	71303890	71309103	A5SS	ENSMUST00000233417.2	known	0.00	0	182	0	182	n	0.00	0	148	0	148	n	0.00	0	303	0	303	n	0.00	0	187	0	187	n	0.00	0	263	0	263	n	0.00	0	179	0	179	n	0.15	52	297	52	297	y	0.00	0	134	0	134	n	0.00	0	116	0	116	n	0.00	0	214	0	214	n	0.00	0	210	0	210	n	0.00	0	201	0	201	n	ENSMUSG00000117098.2	Gm49909	chr17	protein_coding	predicted gene, 49909
known_NIR_8641	chr17	71303890	71308755	-	71303890	71309103	A5SS	ENSMUST00000233417.2	known	0.00	0	182	0	182	n	0.02	3	148	3	148	y	0.01	2	303	2	303	y	0.00	0	187	0	187	n	0.00	0	263	0	263	n	0.00	0	179	0	179	n	0.00	1	297	1	297	n	0.00	0	134	0	134	n	0.00	0	116	0	116	n	0.00	1	214	1	214	n	0.00	1	210	1	210	n	0.01	3	201	3	201	y	ENSMUSG00000117098.2	Gm49909	chr17	protein_coding	predicted gene, 49909
known_NIR_8642	chr17	71387890	71391233	+	71387890	71389198	3pMXE	ENSMUST00000232851.2	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.89	50	6	50	6	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024049.16	Myom1	chr17	protein_coding	myomesin 1
known_NIR_8643	chr17	71387890	71391233	+	71387890;71389491	71389198;71391233	ES	ENSMUST00000073211.13	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.92	50	4.5	50	6;3	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024049.16	Myom1	chr17	protein_coding	myomesin 1
known_NIR_8644	chr17	71491075	71521959	+	71490739	71521959	A5SS	ENSMUST00000156570.8	known	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.02	1	42	1	42	n	0.00	0	13	0	13	n	0.00	0	35	0	35	n	0.00	0	37	0	37	n	0.09	3	32	3	32	y	0.00	0	21	0	21	n	0.00	0	10	0	10	n	0.05	1	21	1	21	n	0.00	0	13	0	13	n	0.00	0	18	0	18	n	ENSMUSG00000024052.18	Lpin2	chr17	protein_coding	lipin 2
known_NIR_8645	chr17	71511875	71521959	+	71490739	71521959	A5SS	ENSMUST00000156570.8	known	0.79	54	14	54	14	y	0.72	23	9	23	9	y	0.14	7	42	7	42	y	0.89	105	13	105	13	y	0.64	62	35	62	35	y	0.21	10	37	10	37	y	0.71	77	32	77	32	y	0.60	32	21	32	21	y	0.83	48	10	48	10	y	0.83	106	21	106	21	y	0.76	42	13	42	13	y	0.89	141	18	141	18	y	ENSMUSG00000024052.18	Lpin2	chr17	protein_coding	lipin 2
known_NIR_8646	chr17	71511875	71521959	+	71491075	71521959	A5SS	ENSMUST00000129635.8	known	1.00	54	0	54	0	n	1.00	23	0	23	0	n	0.88	7	1	7	1	n	1.00	105	0	105	0	n	1.00	62	0	62	0	n	1.00	10	0	10	0	n	0.96	77	3	77	3	y	1.00	32	0	32	0	n	1.00	48	0	48	0	n	0.99	106	1	106	1	n	1.00	42	0	42	0	n	1.00	141	0	141	0	n	ENSMUSG00000024052.18	Lpin2	chr17	protein_coding	lipin 2
known_NIR_8647	chr17	71532236	71536305	+	71532236	71536303	A3SS	ENSMUST00000142842.8	known	0.06	6	89	6	89	y	0.11	5	42	5	42	y	0.00	0	80	0	80	n	0.06	8	122	8	122	y	0.00	0	121	0	121	n	0.09	9	88	9	88	y	0.00	0	122	0	122	n	0.00	0	64	0	64	n	0.06	6	91	6	91	y	0.09	12	125	12	125	y	0.00	0	82	0	82	n	0.09	18	192	18	192	y	ENSMUSG00000024052.18	Lpin2	chr17	protein_coding	lipin 2
known_NIR_8648	chr17	71538514	71539073	+	71538514	71540823	A3SS	ENSMUST00000142842.8	known	0.00	0	95	0	95	n	0.01	1	71	1	71	n	0.01	1	94	1	94	n	0.01	2	140	2	140	y	0.04	5	109	5	109	y	0.00	0	74	0	74	n	0.01	1	161	1	161	n	0.00	0	71	0	71	n	0.01	1	102	1	102	n	0.00	0	133	0	133	n	0.02	2	126	2	126	y	0.02	4	217	4	217	y	ENSMUSG00000024052.18	Lpin2	chr17	protein_coding	lipin 2
known_NIR_8649	chr17	71548721;71549189	71549039;71549621	+	71548721	71549621	cassetteExon	ENSMUST00000129635.8	known	0.00	0.0	116	0;0	116	n	0.00	0.0	102	0;0	102	n	0.00	0.0	111	0;0	111	n	0.01	1.0	174	0;2	174	n	0.00	0.0	173	0;0	173	n	0.01	1.0	109	0;2	109	n	0.01	2.5	207	3;2	207	y	0.01	1.0	101	1;1	101	n	0.01	0.5	99	0;1	99	n	0.00	1.0	206	0;2	206	n	0.00	0.0	161	0;0	161	n	0.00	1.0	263	0;2	263	n	ENSMUSG00000024052.18	Lpin2	chr17	protein_coding	lipin 2
known_NIR_8650	chr17	71563684	71580369	-	71563687	71580369	A3SS	ENSMUST00000233057.2	known	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.14	2	12	2	12	y	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000024053.12	Emilin2	chr17	protein_coding	elastin microfibril interfacer 2
known_NIR_8651	chr17	7189138	7209068	-	7181497	7209068	A3SS	ENSMUST00000231794.2	known	1.00	9	0	9	0	n	0.60	6	4	6	4	y	0.63	12	7	12	7	y	0.57	8	6	8	6	y	0.67	12	6	12	6	y	0.50	8	8	8	8	y	0.59	10	7	10	7	y	0.33	6	12	6	12	y	0.25	2	6	2	6	n	0.39	7	11	7	11	y	0.85	11	2	11	2	y	0.56	15	12	15	12	y	ENSMUSG00000023806.11	Rsph3b	chr17	protein_coding	radial spoke 3B homolog (Chlamydomonas)
known_NIR_8652	chr17	71949828	71955768	+	71949828	71950143	3pMXE	ENSMUST00000234656.2	known	0.94	34	2	34	2	y	1.00	41	0	41	0	n	1.00	40	0	40	0	n	1.00	29	0	29	0	n	0.95	36	2	36	2	y	1.00	30	0	30	0	n	0.98	43	1	43	1	n	1.00	23	0	23	0	n	1.00	21	0	21	0	n	0.95	37	2	37	2	y	1.00	33	0	33	0	n	1.00	37	0	37	0	n	ENSMUSG00000041057.11	Wdr43	chr17	protein_coding	WD repeat domain 43
known_NIR_8653	chr17	71949828;71950231	71950143;71955768	+	71949828	71955768	cassetteExon	ENSMUST00000047086.10	known	0.04	1.5	34	2;1	34	n	0.00	0.0	41	0;0	41	n	0.00	0.0	40	0;0	40	n	0.00	0.0	29	0;0	29	n	0.05	2.0	36	2;2	36	y	0.00	0.0	30	0;0	30	n	0.02	1.0	43	1;1	43	n	0.00	0.0	23	0;0	23	n	0.00	0.0	21	0;0	21	n	0.03	1.0	37	2;0	37	n	0.00	0.0	33	0;0	33	n	0.00	0.0	37	0;0	37	n	ENSMUSG00000041057.11	Wdr43	chr17	protein_coding	WD repeat domain 43
known_NIR_8654	chr17	7246497	7251538	+	7246497;7248567	7248507;7251538	ES	ENSMUST00000089119.13	known	0.00	0	62.0	0	77;47	n	0.02	1	47.0	1	55;39	n	0.02	1	40.5	1	49;32	n	0.01	1	68.5	1	77;60	n	0.04	3	70.0	3	85;55	y	0.03	1	32.0	1	40;24	n	0.01	1	69.5	1	81;58	n	0.00	0	30.5	0	34;27	n	0.02	1	60.0	1	56;64	n	0.07	6	76.0	6	83;69	y	0.00	0	60.5	0	64;57	n	0.00	0	67.0	0	81;53	n	ENSMUSG00000094724.9	Rnaset2b	chr17	protein_coding	ribonuclease T2B
known_NIR_8655	chr17	7246497	7251538	+	7248567	7251538	A5SS&ES	ENSMUST00000231963.2	known	0.00	0	47	0	47	n	0.03	1	39	1	39	n	0.03	1	32	1	32	n	0.02	1	60	1	60	n	0.05	3	55	3	55	y	0.04	1	24	1	24	n	0.02	1	58	1	58	n	0.00	0	27	0	27	n	0.02	1	64	1	64	n	0.08	6	69	6	69	y	0.00	0	57	0	57	n	0.00	0	53	0	53	n	ENSMUSG00000094724.9	Rnaset2b	chr17	protein_coding	ribonuclease T2B
known_NIR_8656	chr17	7251590	7256121	+	7252512	7256121	A5SS	ENSMUST00000232106.2	known	0.30	9	21	9	21	y	0.31	9	20	9	20	y	0.35	7	13	7	13	y	0.11	5	42	5	42	y	0.18	6	27	6	27	y	0.14	3	19	3	19	y	0.18	7	32	7	32	y	0.00	0	17	0	17	n	0.45	14	17	14	17	y	0.40	20	30	20	30	y	0.28	11	29	11	29	y	0.27	7	19	7	19	y	ENSMUSG00000094724.9	Rnaset2b	chr17	protein_coding	ribonuclease T2B
known_NIR_8657	chr17	7251590;7252512	7252455;7256121	+	7251590	7256121	cassetteExon	ENSMUST00000231963.2	known	0.75	27.5	9	34;21	9	y	0.73	24.5	9	29;20	9	y	0.73	19.0	7	25;13	7	y	0.90	45.5	5	49;42	5	y	0.86	37.0	6	47;27	6	y	0.86	18.0	3	17;19	3	y	0.85	39.0	7	46;32	7	y	1.00	23.5	0	30;17	0	n	0.67	29.0	14	41;17	14	y	0.64	35.0	20	40;30	20	y	0.77	36.0	11	43;29	11	y	0.80	28.0	7	37;19	7	y	ENSMUSG00000094724.9	Rnaset2b	chr17	protein_coding	ribonuclease T2B
known_NIR_8658	chr17	73144703	73153274	+	73143786	73153274	A5SS	ENSMUST00000045174.7	known	0.32	33	69	33	69	y	0.26	26	73	26	73	y	0.20	26	102	26	102	y	0.29	33	79	33	79	y	0.35	56	104	56	104	y	0.36	27	47	27	47	y	0.38	64	105	64	105	y	0.23	21	71	21	71	y	0.31	33	74	33	74	y	0.28	42	108	42	108	y	0.31	34	75	34	75	y	0.31	36	82	36	82	y	ENSMUSG00000039770.7	Ypel5	chr17	protein_coding	yippee like 5
known_NIR_8659	chr17	73144814	73153274	+	73143786	73153274	A5SS	ENSMUST00000045174.7	known	0.13	10	69	10	69	y	0.14	12	73	12	73	y	0.09	10	102	10	102	y	0.18	17	79	17	79	y	0.12	14	104	14	104	y	0.11	6	47	6	47	y	0.11	13	105	13	105	y	0.09	7	71	7	71	y	0.16	14	74	14	74	y	0.18	23	108	23	108	y	0.12	10	75	10	75	y	0.08	7	82	7	82	y	ENSMUSG00000039770.7	Ypel5	chr17	protein_coding	yippee like 5
known_NIR_8660	chr17	73144814	73153274	+	73144703	73153274	A5SS	ENSMUST00000233210.2	known	0.23	10	33	10	33	y	0.32	12	26	12	26	y	0.28	10	26	10	26	y	0.34	17	33	17	33	y	0.20	14	56	14	56	y	0.18	6	27	6	27	y	0.17	13	64	13	64	y	0.25	7	21	7	21	y	0.30	14	33	14	33	y	0.35	23	42	23	42	y	0.23	10	34	10	34	y	0.16	7	36	7	36	y	ENSMUSG00000039770.7	Ypel5	chr17	protein_coding	yippee like 5
known_NIR_8661	chr17	73146945	73153274	+	73143786	73153274	A5SS	ENSMUST00000045174.7	known	0.05	4	69	4	69	y	0.06	5	73	5	73	y	0.09	10	102	10	102	y	0.05	4	79	4	79	y	0.05	5	104	5	104	y	0.10	5	47	5	47	y	0.02	2	105	2	105	y	0.07	5	71	5	71	y	0.05	4	74	4	74	y	0.12	15	108	15	108	y	0.09	7	75	7	75	y	0.10	9	82	9	82	y	ENSMUSG00000039770.7	Ypel5	chr17	protein_coding	yippee like 5
known_NIR_8662	chr17	73146945	73153274	+	73144703	73153274	A5SS	ENSMUST00000233210.2	known	0.11	4	33	4	33	y	0.16	5	26	5	26	y	0.28	10	26	10	26	y	0.11	4	33	4	33	y	0.08	5	56	5	56	y	0.16	5	27	5	27	y	0.03	2	64	2	64	y	0.19	5	21	5	21	y	0.11	4	33	4	33	y	0.26	15	42	15	42	y	0.17	7	34	7	34	y	0.20	9	36	9	36	y	ENSMUSG00000039770.7	Ypel5	chr17	protein_coding	yippee like 5
known_NIR_8663	chr17	73146945	73153274	+	73144814	73153274	A5SS	ENSMUST00000233886.2	known	0.29	4	10	4	10	y	0.29	5	12	5	12	y	0.50	10	10	10	10	y	0.19	4	17	4	17	y	0.26	5	14	5	14	y	0.45	5	6	5	6	y	0.13	2	13	2	13	y	0.42	5	7	5	7	y	0.22	4	14	4	14	y	0.39	15	23	15	23	y	0.41	7	10	7	10	y	0.56	9	7	9	7	y	ENSMUSG00000039770.7	Ypel5	chr17	protein_coding	yippee like 5
known_NIR_8664	chr17	73148124	73153274	+	73143786	73153274	A5SS	ENSMUST00000045174.7	known	0.05	4	69	4	69	y	0.00	0	73	0	73	n	0.05	5	102	5	102	y	0.00	0	79	0	79	n	0.00	0	104	0	104	n	0.00	0	47	0	47	n	0.02	2	105	2	105	y	0.00	0	71	0	71	n	0.01	1	74	1	74	n	0.00	0	108	0	108	n	0.00	0	75	0	75	n	0.02	2	82	2	82	y	ENSMUSG00000039770.7	Ypel5	chr17	protein_coding	yippee like 5
known_NIR_8665	chr17	73148124	73153274	+	73144703	73153274	A5SS	ENSMUST00000233210.2	known	0.11	4	33	4	33	y	0.00	0	26	0	26	n	0.16	5	26	5	26	y	0.00	0	33	0	33	n	0.00	0	56	0	56	n	0.00	0	27	0	27	n	0.03	2	64	2	64	y	0.00	0	21	0	21	n	0.03	1	33	1	33	n	0.00	0	42	0	42	n	0.00	0	34	0	34	n	0.05	2	36	2	36	y	ENSMUSG00000039770.7	Ypel5	chr17	protein_coding	yippee like 5
known_NIR_8666	chr17	73148124	73153274	+	73144814	73153274	A5SS	ENSMUST00000233886.2	known	0.29	4	10	4	10	y	0.00	0	12	0	12	n	0.33	5	10	5	10	y	0.00	0	17	0	17	n	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.13	2	13	2	13	y	0.00	0	7	0	7	n	0.07	1	14	1	14	n	0.00	0	23	0	23	n	0.00	0	10	0	10	n	0.22	2	7	2	7	n	ENSMUSG00000039770.7	Ypel5	chr17	protein_coding	yippee like 5
known_NIR_8667	chr17	73148124	73153274	+	73146945	73153274	A5SS	ENSMUST00000233221.2	known	0.50	4	4	4	4	n	0.00	0	5	0	5	n	0.33	5	10	5	10	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.50	2	2	2	2	n	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.18	2	9	2	9	y	ENSMUSG00000039770.7	Ypel5	chr17	protein_coding	yippee like 5
known_NIR_8668	chr17	73415151	73468818	+	73415140	73468818	A5SS	ENSMUST00000130574.4	known	1.00	16	0	16	0	n	1.00	15	0	15	0	n	0.96	26	1	26	1	n	0.78	21	6	21	6	y	0.88	22	3	22	3	y	0.89	17	2	17	2	y	0.92	33	3	33	3	y	0.73	16	6	16	6	y	0.75	15	5	15	5	y	0.86	18	3	18	3	y	0.75	12	4	12	4	y	0.88	21	3	21	3	y	ENSMUSG00000054469.15	Lclat1	chr17	protein_coding	lysocardiolipin acyltransferase 1
known_NIR_8669	chr17	73415172	73468818	+	73415140	73468818	A5SS	ENSMUST00000130574.4	known	1.00	1	0	1	0	n	-	-	-	-	-	-	0.75	3	1	3	1	n	0.60	9	6	9	6	y	0.82	14	3	14	3	y	0.60	3	2	3	2	n	0.70	7	3	7	3	y	0.54	7	6	7	6	y	0.17	1	5	1	5	n	0.80	12	3	12	3	y	0.20	1	4	1	4	n	0.57	4	3	4	3	n	ENSMUSG00000054469.15	Lclat1	chr17	protein_coding	lysocardiolipin acyltransferase 1
known_NIR_8670	chr17	73415172	73468818	+	73415151	73468818	A5SS	ENSMUST00000149064.9	known	0.06	1	16	1	16	n	0.00	0	15	0	15	n	0.10	3	26	3	26	y	0.30	9	21	9	21	y	0.39	14	22	14	22	y	0.15	3	17	3	17	y	0.17	7	33	7	33	y	0.30	7	16	7	16	y	0.06	1	15	1	15	n	0.40	12	18	12	18	y	0.08	1	12	1	12	n	0.16	4	21	4	21	y	ENSMUSG00000054469.15	Lclat1	chr17	protein_coding	lysocardiolipin acyltransferase 1
known_NIR_8671	chr17	74193514	74193609	-	74193514	74194881	A5SS	ENSMUST00000233162.2	known	0.00	0	17	0	17	n	0.00	0	17	0	17	n	0.00	0	16	0	16	n	0.05	1	19	1	19	n	0.00	0	42	0	42	n	0.00	0	17	0	17	n	0.04	1	22	1	22	n	0.00	0	13	0	13	n	0.12	3	21	3	21	y	0.00	0	21	0	21	n	0.00	0	25	0	25	n	0.05	1	21	1	21	n	ENSMUSG00000024066.10	Xdh	chr17	protein_coding	xanthine dehydrogenase
known_NIR_8672	chr17	74193514	74193609	-	74193514	74198106	A5SS	ENSMUST00000233392.2	known	0.00	0	199	0	199	n	0.00	0	208	0	208	n	0.00	0	170	0	170	n	0.01	1	154	1	154	n	0.00	0	206	0	206	n	0.00	0	94	0	94	n	0.00	1	241	1	241	n	0.00	0	102	0	102	n	0.02	3	175	3	175	y	0.00	0	237	0	237	n	0.00	0	214	0	214	n	0.00	1	239	1	239	n	ENSMUSG00000024066.10	Xdh	chr17	protein_coding	xanthine dehydrogenase
known_NIR_8673	chr17	74193514	74194881	-	74193514	74198106	A5SS	ENSMUST00000233392.2	known	0.08	17	199	17	199	y	0.08	17	208	17	208	y	0.09	16	170	16	170	y	0.11	19	154	19	154	y	0.17	42	206	42	206	y	0.15	17	94	17	94	y	0.08	22	241	22	241	y	0.11	13	102	13	102	y	0.11	21	175	21	175	y	0.08	21	237	21	237	y	0.10	25	214	25	214	y	0.08	21	239	21	239	y	ENSMUSG00000024066.10	Xdh	chr17	protein_coding	xanthine dehydrogenase
known_NIR_8674	chr17	74196405	74198106	-	74193514	74198106	A3SS	ENSMUST00000233392.2	known	0.13	31	199	31	199	y	0.09	20	208	20	208	y	0.07	12	170	12	170	y	0.13	24	154	24	154	y	0.13	30	206	30	206	y	0.07	7	94	7	94	y	0.14	40	241	40	241	y	0.21	27	102	27	102	y	0.15	31	175	31	175	y	0.13	36	237	36	237	y	0.16	40	214	40	214	y	0.12	34	239	34	239	y	ENSMUSG00000024066.10	Xdh	chr17	protein_coding	xanthine dehydrogenase
known_NIR_8675	chr17	74242413	74242867	-	74241858	74242867	A3SS	ENSMUST00000024866.6	known	0.00	0	103	0	103	n	0.00	0	85	0	85	n	0.00	0	127	0	127	n	0.00	0	170	0	170	n	0.00	0	187	0	187	n	0.00	0	89	0	89	n	0.00	0	140	0	140	n	0.00	0	78	0	78	n	0.00	0	146	0	146	n	0.01	3	200	3	200	y	0.00	0	127	0	127	n	0.00	0	182	0	182	n	ENSMUSG00000024066.10	Xdh	chr17	protein_coding	xanthine dehydrogenase
known_NIR_8676	chr17	74363415	74375396	-	74334136	74375396	A3SS	ENSMUST00000232749.2	known	0.75	3	1	3	1	n	0.83	5	1	5	1	n	0.00	0	1	0	1	n	0.58	7	5	7	5	y	0.89	8	1	8	1	n	0.50	3	3	3	3	n	0.83	10	2	10	2	y	0.67	4	2	4	2	n	0.82	9	2	9	2	y	0.50	4	4	4	4	n	0.89	8	1	8	1	n	0.78	7	2	7	2	n	ENSMUSG00000117038.2	Gm49880	chr17	lncRNA	predicted gene, 49880
known_NIR_8677	chr17	74380937	74385758	-	74380937	74385742	A5SS	ENSMUST00000232749.2	known	0.11	1	8	1	8	n	0.07	1	13	1	13	n	0.00	0	10	0	10	n	0.19	4	17	4	17	y	0.18	5	23	5	23	y	0.05	1	18	1	18	n	0.29	5	12	5	12	y	0.00	0	15	0	15	n	0.33	5	10	5	10	y	0.24	7	22	7	22	y	0.07	1	13	1	13	n	0.23	9	30	9	30	y	ENSMUSG00000117038.2	Gm49880	chr17	lncRNA	predicted gene, 49880
known_NIR_8678	chr17	74509360	74524022	-	74509360	74548900	A5SS	ENSMUST00000233176.2	known	0.98	89	2	89	2	y	1.00	96	0	96	0	n	1.00	84	0	84	0	n	1.00	97	0	97	0	n	0.99	122	1	122	1	n	1.00	47	0	47	0	n	1.00	118	0	118	0	n	1.00	58	0	58	0	n	0.96	85	4	85	4	y	0.98	116	2	116	2	y	1.00	95	0	95	0	n	1.00	139	0	139	0	n	ENSMUSG00000058704.10	Memo1	chr17	protein_coding	mediator of cell motility 1
known_NIR_8679	chr17	74509360	74532427	-	74509360;74524098	74524022;74532427	ES	ENSMUST00000233514.3	known	0.07	6	82.5	6	89;76	y	0.04	3	73.5	3	96;51	y	0.06	5	74.0	5	84;64	y	0.02	2	94.0	2	97;91	y	0.04	5	115.5	5	122;109	y	0.05	2	42.0	2	47;37	y	0.06	7	105.5	7	118;93	y	0.08	4	46.5	4	58;35	y	0.06	5	83.0	5	85;81	y	0.05	6	109.0	6	116;102	y	0.03	3	84.0	3	95;73	y	0.03	3	114.0	3	139;89	y	ENSMUSG00000058704.10	Memo1	chr17	protein_coding	mediator of cell motility 1
known_NIR_8680	chr17	74509360;74532569	74532427;74548900	-	74509360	74548900	cassetteExon	ENSMUST00000233176.2	known	0.95	39.5	2	6;73	2	y	1.00	28.0	0	3;53	0	n	1.00	44.0	0	5;83	0	n	1.00	49.0	0	2;96	0	n	0.98	46.0	1	5;87	1	n	1.00	17.5	0	2;33	0	n	1.00	56.0	0	7;105	0	n	1.00	33.0	0	4;62	0	n	0.89	34.0	4	5;63	4	y	0.96	53.0	2	6;100	2	y	1.00	45.5	0	3;88	0	n	1.00	61.0	0	3;119	0	n	ENSMUSG00000058704.10	Memo1	chr17	protein_coding	mediator of cell motility 1
known_NIR_8681	chr17	74549011	74562223	-	74549011;74552082	74551970;74562223	ES	ENSMUST00000233514.3	known	0.00	0	90.0	0	96;84	n	0.00	0	54.5	0	50;59	n	0.00	0	77.5	0	87;68	n	0.00	0	89.0	0	91;87	n	0.00	0	101.0	0	107;95	n	0.00	0	37.5	0	32;43	n	0.00	0	79.0	0	86;72	n	0.00	0	55.5	0	61;50	n	0.00	0	86.0	0	93;79	n	0.00	0	97.5	0	112;83	n	0.03	2	78.0	2	85;71	y	0.01	1	106.0	1	122;90	n	ENSMUSG00000058704.10	Memo1	chr17	protein_coding	mediator of cell motility 1
known_NIR_8682	chr17	74549011	74562223	-	74552082	74562223	3pMXE	ENSMUST00000233144.2	known	0.00	0	84	0	84	n	0.00	0	59	0	59	n	0.00	0	68	0	68	n	0.00	0	87	0	87	n	0.00	0	95	0	95	n	0.00	0	43	0	43	n	0.00	0	72	0	72	n	0.00	0	50	0	50	n	0.00	0	79	0	79	n	0.00	0	83	0	83	n	0.03	2	71	2	71	y	0.01	1	90	1	90	n	ENSMUSG00000058704.10	Memo1	chr17	protein_coding	mediator of cell motility 1
known_NIR_8683	chr17	74552082	74562223	-	74532569	74562223	A3SS	ENSMUST00000232989.2	known	1.00	84	0	84	0	n	1.00	59	0	59	0	n	0.96	68	3	68	3	y	1.00	87	0	87	0	n	1.00	95	0	95	0	n	0.98	43	1	43	1	n	1.00	72	0	72	0	n	1.00	50	0	50	0	n	0.98	79	2	79	2	y	0.99	83	1	83	1	n	1.00	71	0	71	0	n	1.00	90	0	90	0	n	ENSMUSG00000058704.10	Memo1	chr17	protein_coding	mediator of cell motility 1
known_NIR_8684	chr17	74606819	74622897	-	74606819;74614857	74614715;74622897	ES	ENSMUST00000233581.2	known	0.02	2	97.0	2	107;87	y	0.00	0	113.0	0	118;108	n	0.00	0	96.0	0	106;86	n	0.00	0	125.5	0	139;112	n	0.00	0	120.5	0	124;117	n	0.00	0	66.5	0	69;64	n	0.01	1	136.5	1	149;124	n	0.02	2	81.0	2	99;63	y	0.00	0	83.5	0	87;80	n	0.00	0	145.0	0	144;146	n	0.00	0	113.0	0	126;100	n	0.00	0	110.0	0	121;99	n	ENSMUSG00000024067.15	Dpy30	chr17	protein_coding	dpy-30, histone methyltransferase complex regulatory subunit
known_NIR_8685	chr17	74623111	74623215	-	74623111	74623340	A5SS	ENSMUST00000233581.2	known	0.00	0	54	0	54	n	0.01	1	79	1	79	n	0.00	0	55	0	55	n	0.02	2	83	2	83	y	0.00	0	74	0	74	n	0.04	2	44	2	44	y	0.01	1	72	1	72	n	0.04	2	48	2	48	y	0.00	0	66	0	66	n	0.05	4	78	4	78	y	0.00	0	62	0	62	n	0.03	2	73	2	73	y	ENSMUSG00000024067.15	Dpy30	chr17	protein_coding	dpy-30, histone methyltransferase complex regulatory subunit
known_NIR_8686	chr17	74646440	74658945	+	74646440	74658948	A3SS	ENSMUST00000224711.2	known	0.45	17	21	17	21	y	0.45	14	17	14	17	y	0.40	19	28	19	28	y	0.37	25	43	25	43	y	0.45	22	27	22	27	y	0.39	11	17	11	17	y	0.46	26	30	26	30	y	0.41	17	24	17	24	y	0.19	6	25	6	25	y	0.48	30	32	30	32	y	0.32	11	23	11	23	y	0.52	35	32	35	32	y	ENSMUSG00000024068.9	Spast	chr17	protein_coding	spastin
known_NIR_8687	chr17	74663164	74674243	+	74663164;74666344	74666249;74674243	ES	ENSMUST00000224711.2	known	0.08	4	46.5	4	49;44	y	0.12	3	21.5	3	26;17	y	0.23	16	55.0	16	58;52	y	0.14	10	61.0	10	72;50	y	0.13	10	66.5	10	75;58	y	0.16	3	16.0	3	16;16	y	0.15	10	55.5	10	47;64	y	0.12	6	43.0	6	40;46	y	0.05	2	40.0	2	40;40	y	0.06	4	61.0	4	66;56	y	0.12	5	35.0	5	35;35	y	0.05	3	62.5	3	64;61	y	ENSMUSG00000024068.9	Spast	chr17	protein_coding	spastin
known_NIR_8688	chr17	74715921	74716348	+	74715921	74716353	A3SS	ENSMUST00000234515.2	known	1.00	22	0	22	0	n	1.00	19	0	19	0	n	0.97	31	1	31	1	n	1.00	33	0	33	0	n	0.95	37	2	37	2	y	1.00	24	0	24	0	n	1.00	29	0	29	0	n	0.96	24	1	24	1	n	1.00	23	0	23	0	n	0.97	39	1	39	1	n	1.00	18	0	18	0	n	1.00	37	0	37	0	n	ENSMUSG00000024069.15	Slc30a6	chr17	protein_coding	solute carrier family 30 (zinc transporter), member 6
known_NIR_8689	chr17	74796789;74797707	74797476;74799341	+	74796789	74799341	cassetteExon	ENSMUST00000024873.7	known	0.00	0.0	78	0;0	78	n	0.01	0.5	70	0;1	70	n	0.02	3.5	195	2;5	195	y	0.00	0.0	163	0;0	163	n	0.02	3.0	166	0;6	166	n	0.00	0.0	65	0;0	65	n	0.02	2.0	93	1;3	93	n	0.03	2.5	97	0;5	97	n	0.02	1.5	94	2;1	94	n	0.01	1.5	112	0;3	112	n	0.02	2.0	87	1;3	87	n	0.01	1.5	133	0;3	133	n	ENSMUSG00000024072.10	Yipf4	chr17	protein_coding	Yip1 domain family, member 4
known_NIR_8690	chr17	74797086	74799341	+	74796789	74799341	A5SS	ENSMUST00000024873.7	known	0.03	2	78	2	78	y	0.01	1	70	1	70	n	0.01	1	195	1	195	n	0.03	5	163	5	163	y	0.04	7	166	7	166	y	0.00	0	65	0	65	n	0.06	6	93	6	93	y	0.03	3	97	3	97	y	0.02	2	94	2	94	y	0.03	4	112	4	112	y	0.01	1	87	1	87	n	0.01	1	133	1	133	n	ENSMUSG00000024072.10	Yipf4	chr17	protein_coding	Yip1 domain family, member 4
known_NIR_8691	chr17	74797086	74799341	+	74797707	74799341	A5SS&ES	ENSMUST00000234432.2	known	1.00	2	0	2	0	n	0.50	1	1	1	1	n	0.17	1	5	1	5	n	1.00	5	0	5	0	n	0.54	7	6	7	6	y	-	-	-	-	-	-	0.67	6	3	6	3	n	0.38	3	5	3	5	n	0.67	2	1	2	1	n	0.57	4	3	4	3	n	0.25	1	3	1	3	n	0.25	1	3	1	3	n	ENSMUSG00000024072.10	Yipf4	chr17	protein_coding	Yip1 domain family, member 4
known_NIR_8692	chr17	74801010	74803585	+	74801094	74803585	A5SS	ENSMUST00000024873.7	known	0.00	0	103	0	103	n	0.00	0	110	0	110	n	0.00	0	175	0	175	n	0.00	0	148	0	148	n	0.00	0	189	0	189	n	0.00	0	88	0	88	n	0.00	0	181	0	181	n	0.03	3	100	3	100	y	0.00	0	120	0	120	n	0.00	0	186	0	186	n	0.00	0	101	0	101	n	0.00	0	195	0	195	n	ENSMUSG00000024072.10	Yipf4	chr17	protein_coding	Yip1 domain family, member 4
known_NIR_8693	chr17	74919340	74920390	+	74919340	74920372	A3SS	ENSMUST00000180037.8	known	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.36	4	7	4	7	y	0.00	0	14	0	14	n	0.00	0	20	0	20	n	0.06	1	16	1	16	n	0.09	1	10	1	10	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.17	2	10	2	10	y	ENSMUSG00000024073.17	Birc6	chr17	protein_coding	baculoviral IAP repeat-containing 6
known_NIR_8694	chr17	74922352	74925431	+	74922325	74925431	A5SS	ENSMUST00000180037.8	known	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.08	1	11	1	11	n	0.20	2	8	2	8	y	0.10	1	9	1	9	n	0.00	0	3	0	3	n	0.22	2	7	2	7	n	0.40	6	9	6	9	y	0.25	1	3	1	3	n	0.44	4	5	4	5	n	0.38	3	5	3	5	n	0.11	2	16	2	16	y	ENSMUSG00000024073.17	Birc6	chr17	protein_coding	baculoviral IAP repeat-containing 6
known_NIR_8695	chr17	74959741	74961349	+	74959741	74961384	A3SS	ENSMUST00000180037.8	known	0.00	0	31	0	31	n	0.00	0	12	0	12	n	0.00	0	51	0	51	n	0.00	0	46	0	46	n	0.00	0	74	0	74	n	0.00	0	21	0	21	n	0.00	0	35	0	35	n	0.03	1	33	1	33	n	0.00	0	42	0	42	n	0.04	2	48	2	48	y	0.00	0	23	0	23	n	0.00	0	57	0	57	n	ENSMUSG00000024073.17	Birc6	chr17	protein_coding	baculoviral IAP repeat-containing 6
known_NIR_8696	chr17	74984374;74993288	74993116;74996213	+	74984374	74996213	cassetteExon	ENSMUST00000180037.8	known	0.07	6.0	78	2;10	78	y	0.12	5.5	42	7;4	42	y	0.05	4.5	79	2;7	79	y	0.09	6.0	60	3;9	60	y	0.09	7.5	75	7;8	75	y	0.06	2.5	36	3;2	36	y	0.09	5.5	56	5;6	56	y	0.15	4.5	25	4;5	25	y	0.06	2.5	39	3;2	39	y	0.09	6.0	58	2;10	58	y	0.07	3.0	40	2;4	40	y	0.12	9.0	64	2;16	64	y	ENSMUSG00000024073.17	Birc6	chr17	protein_coding	baculoviral IAP repeat-containing 6
known_NIR_8697	chr17	75058123	75084639	+	75058123;75077351	75077238;75084639	ES	ENSMUST00000024882.8	known	0.17	3	14.5	3	19;10	y	0.00	0	19.0	0	29;9	n	0.06	1	16.5	1	20;13	n	0.06	1	15.5	1	13;18	n	0.00	0	21.0	0	22;20	n	0.00	0	4.5	0	5;4	n	0.00	0	22.0	0	27;17	n	0.00	0	12.0	0	13;11	n	0.00	0	16.0	0	23;9	n	0.05	1	20.5	1	32;9	n	0.00	0	11.5	0	9;14	n	0.14	3	18.0	3	19;17	y	ENSMUSG00000024078.8	Ttc27	chr17	protein_coding	tetratricopeptide repeat domain 27
known_NIR_8698	chr17	75169141	75170332	+	75169141	75170329	A3SS	ENSMUST00000024882.8	known	0.13	5	34	5	34	y	0.31	12	27	12	27	y	0.27	4	11	4	11	y	0.05	1	21	1	21	n	0.12	4	29	4	29	y	0.21	4	15	4	15	y	0.19	6	26	6	26	y	0.10	1	9	1	9	n	0.29	10	24	10	24	y	0.15	5	28	5	28	y	0.21	8	30	8	30	y	0.23	10	33	10	33	y	ENSMUSG00000024078.8	Ttc27	chr17	protein_coding	tetratricopeptide repeat domain 27
known_NIR_8699	chr17	78545344	78588675	+	78545344;78587644	78587402;78588675	ES	ENSMUST00000112498.3	known	0.00	0	4.0	0	4;4	n	-	-	-	-	-	-	0.13	1	6.5	1	5;8	n	0.00	0	10.0	0	14;6	n	0.15	2	11.0	2	7;15	y	0.00	0	6.5	0	6;7	n	0.00	0	12.0	0	12;12	n	0.00	0	6.0	0	9;3	n	0.00	0	2.5	0	2;3	n	0.00	0	10.5	0	9;12	n	0.00	0	7.0	0	9;5	n	0.00	0	13.0	0	14;12	n	ENSMUSG00000024074.9	Crim1	chr17	protein_coding	cysteine rich transmembrane BMP regulator 1 (chordin like)
known_NIR_8700	chr17	78545344	78588675	+	78587644	78588675	5pMXE	ENSMUST00000234059.2	known	0.00	0	4	0	4	n	-	-	-	-	-	-	0.11	1	8	1	8	n	0.00	0	6	0	6	n	0.12	2	15	2	15	y	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	ENSMUSG00000024074.9	Crim1	chr17	protein_coding	cysteine rich transmembrane BMP regulator 1 (chordin like)
known_NIR_8701	chr17	78588795	78620553	+	78588795	78610416	A3SS&ES	ENSMUST00000234700.2	known	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.15	2	11	2	11	y	ENSMUSG00000024074.9	Crim1	chr17	protein_coding	cysteine rich transmembrane BMP regulator 1 (chordin like)
known_NIR_8702	chr17	78588795	78620553	+	78588795;78610537	78610416;78620553	ES	ENSMUST00000112498.3	known	0.00	0	4.0	0	1;7	n	0.00	0	4.0	0	5;3	n	0.00	0	10.5	0	8;13	n	0.00	0	10.0	0	12;8	n	0.00	0	12.0	0	9;15	n	0.00	0	7.5	0	6;9	n	0.00	0	8.0	0	8;8	n	0.00	0	4.0	0	5;3	n	0.00	0	5.5	0	4;7	n	0.00	0	12.5	0	8;17	n	0.00	0	8.0	0	7;9	n	0.15	2	11.5	2	11;12	y	ENSMUSG00000024074.9	Crim1	chr17	protein_coding	cysteine rich transmembrane BMP regulator 1 (chordin like)
known_NIR_8703	chr17	78692248;78694500	78694420;78708059	-	78692248	78708059	cassetteExon	ENSMUST00000234052.2	known	0.01	1.5	110	2;1	110	n	0.00	0.5	107	0;1	107	n	0.01	2.5	189	3;2	189	y	0.01	1.0	95	2;0	95	n	0.02	2.5	159	3;2	159	y	0.02	2.0	92	3;1	92	n	0.05	8.0	148	7;9	148	y	0.01	0.5	71	0;1	71	n	0.02	2.5	119	4;1	119	n	0.02	3.5	166	4;3	166	y	0.01	1.5	155	3;0	155	n	0.00	0.0	128	0;0	128	n	ENSMUSG00000056121.17	Fez2	chr17	protein_coding	fasciculation and elongation protein zeta 2 (zygin II)
known_NIR_8704	chr17	78708327	78708436	-	78708327	78710169	A5SS	ENSMUST00000234052.2	known	0.01	1	89	1	89	n	0.01	1	80	1	80	n	0.03	4	150	4	150	y	0.02	2	98	2	98	y	0.05	6	111	6	111	y	0.04	3	69	3	69	y	0.01	1	106	1	106	n	0.05	4	71	4	71	y	0.05	4	75	4	75	y	0.02	3	128	3	128	y	0.01	1	136	1	136	n	0.00	0	106	0	106	n	ENSMUSG00000056121.17	Fez2	chr17	protein_coding	fasciculation and elongation protein zeta 2 (zygin II)
known_NIR_8705	chr17	78977323;78977870	78977784;78980005	-	78977323	78980005	cassetteExon	ENSMUST00000145910.9	known	0.00	0.0	3	0;0	3	n	0.00	0.0	5	0;0	5	n	0.03	0.5	14	1;0	14	n	0.00	0.0	14	0;0	14	n	0.00	0.0	9	0;0	9	n	0.00	0.0	7	0;0	7	n	0.17	1.0	5	0;2	5	n	0.00	0.0	13	0;0	13	n	0.11	0.5	4	0;1	4	n	0.12	1.0	7	0;2	7	n	0.00	0.0	3	0;0	3	n	0.18	3.0	14	4;2	14	y	ENSMUSG00000024077.16	Strn	chr17	protein_coding	striatin, calmodulin binding protein
known_NIR_8706	chr17	79143107	79145260	+	79143107;79144349	79144223;79145260	ES	ENSMUST00000233775.2	known	0.04	1	23.0	1	18;28	n	0.04	1	22.0	1	20;24	n	0.06	2	31.5	2	26;37	y	0.06	2	33.0	2	41;25	y	0.05	2	41.5	2	47;36	y	0.14	3	19.0	3	12;26	y	0.08	3	33.0	3	32;34	y	0.00	0	17.0	0	18;16	n	0.08	2	22.0	2	16;28	y	0.03	1	35.0	1	38;32	n	0.15	4	22.0	4	19;25	y	0.08	3	32.5	3	24;41	y	ENSMUSG00000050668.11	Gpatch11	chr17	protein_coding	G patch domain containing 11
known_NIR_8707	chr17	79145331	79146416	+	79145331	79145679	3pMXE	ENSMUST00000233775.2	known	0.97	37	1	37	1	n	0.96	27	1	27	1	n	1.00	32	0	32	0	n	1.00	33	0	33	0	n	0.95	56	3	56	3	y	0.93	25	2	25	2	y	1.00	21	0	21	0	n	0.90	18	2	18	2	y	0.91	20	2	20	2	y	0.95	36	2	36	2	y	0.95	21	1	21	1	n	1.00	34	0	34	0	n	ENSMUSG00000050668.11	Gpatch11	chr17	protein_coding	G patch domain containing 11
known_NIR_8708	chr17	79185962	79189829	-	79185702	79189829	A3SS	ENSMUST00000024884.5	known	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.32	10	21	10	21	y	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.18	2	9	2	9	y	0.27	3	8	3	8	y	0.00	0	7	0	7	n	0.25	2	6	2	6	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	ENSMUSG00000024079.5	Eif2ak2	chr17	protein_coding	eukaryotic translation initiation factor 2-alpha kinase 2
known_NIR_8709	chr17	79224122	79225786	+	79223954	79225786	A5SS	ENSMUST00000180077.7	known	0.68	19	9	19	9	y	0.74	34	12	34	12	y	0.82	31	7	31	7	y	0.73	37	14	37	14	y	0.80	39	10	39	10	y	0.81	21	5	21	5	y	0.67	37	18	37	18	y	0.82	18	4	18	4	y	0.68	26	12	26	12	y	0.67	37	18	37	18	y	0.83	39	8	39	8	y	0.63	34	20	34	20	y	ENSMUSG00000062691.11	Cebpzos	chr17	protein_coding	CCAAT/enhancer binding protein (C/EBP), zeta, opposite strand
known_NIR_8710	chr17	79224489	79225786	+	79223954	79225786	A5SS	ENSMUST00000180077.7	known	0.25	3	9	3	9	y	0.25	4	12	4	12	y	0.00	0	7	0	7	n	0.07	1	14	1	14	n	0.33	5	10	5	10	y	0.17	1	5	1	5	n	0.18	4	18	4	18	y	0.00	0	4	0	4	n	0.33	6	12	6	12	y	0.14	3	18	3	18	y	0.11	1	8	1	8	n	0.17	4	20	4	20	y	ENSMUSG00000062691.11	Cebpzos	chr17	protein_coding	CCAAT/enhancer binding protein (C/EBP), zeta, opposite strand
known_NIR_8711	chr17	79224489	79225786	+	79224122	79225786	A5SS	ENSMUST00000063817.7	known	0.14	3	19	3	19	y	0.11	4	34	4	34	y	0.00	0	31	0	31	n	0.03	1	37	1	37	n	0.11	5	39	5	39	y	0.05	1	21	1	21	n	0.10	4	37	4	37	y	0.00	0	18	0	18	n	0.19	6	26	6	26	y	0.07	3	37	3	37	y	0.03	1	39	1	39	n	0.11	4	34	4	34	y	ENSMUSG00000062691.11	Cebpzos	chr17	protein_coding	CCAAT/enhancer binding protein (C/EBP), zeta, opposite strand
known_NIR_8712	chr17	79239770	79242290	-	79239770	79242004	A5SS	ENSMUST00000024885.10	known	0.03	2	56	2	56	y	0.04	2	53	2	53	y	0.00	0	94	0	94	n	0.00	0	75	0	75	n	0.04	4	85	4	85	y	0.02	1	41	1	41	n	0.05	3	63	3	63	y	0.00	0	39	0	39	n	0.02	1	43	1	43	n	0.04	4	93	4	93	y	0.00	0	58	0	58	n	0.04	3	79	3	79	y	ENSMUSG00000024081.10	Cebpz	chr17	protein_coding	CCAAT/enhancer binding protein zeta
known_NIR_8713	chr17	79251373	79253725	+	79251373;79252513	79252370;79253725	ES	ENSMUST00000024887.6	known	0.07	4	51.5	4	48;55	y	0.10	6	55.5	6	48;63	y	0.14	10	62.5	10	63;62	y	0.12	8	58.0	8	50;66	y	0.03	2	64.0	2	51;77	y	0.09	4	40.5	4	32;49	y	0.03	2	69.0	2	59;79	y	0.10	5	43.0	5	39;47	y	0.11	5	42.0	5	36;48	y	0.09	7	74.5	7	61;88	y	0.07	5	62.5	5	66;59	y	0.05	3	58.5	3	59;58	y	ENSMUSG00000024082.6	Ndufaf7	chr17	protein_coding	NADH:ubiquinone oxidoreductase complex assembly factor 7
known_NIR_8714	chr17	79251373	79253725	+	79252513	79253725	5pMXE	ENSMUST00000233168.2	known	0.07	4	55	4	55	y	0.09	6	63	6	63	y	0.14	10	62	10	62	y	0.11	8	66	8	66	y	0.03	2	77	2	77	y	0.08	4	49	4	49	y	0.02	2	79	2	79	y	0.10	5	47	5	47	y	0.09	5	48	5	48	y	0.07	7	88	7	88	y	0.08	5	59	5	59	y	0.05	3	58	3	58	y	ENSMUSG00000024082.6	Ndufaf7	chr17	protein_coding	NADH:ubiquinone oxidoreductase complex assembly factor 7
known_NIR_8715	chr17	79270008	79273604	-	79270005	79273604	A3SS	ENSMUST00000003191.14	known	0.90	73	8	73	8	y	1.00	40	0	40	0	n	0.97	60	2	60	2	y	1.00	103	0	103	0	n	0.95	125	7	125	7	y	1.00	34	0	34	0	n	0.93	93	7	93	7	y	0.99	72	1	72	1	n	1.00	58	0	58	0	n	0.93	129	10	129	10	y	0.95	77	4	77	4	y	0.92	123	10	123	10	y	ENSMUSG00000024070.16	Prkd3	chr17	protein_coding	protein kinase D3
known_NIR_8716	chr17	79279269	79279832	-	79278912	79279832	A3SS	ENSMUST00000003191.14	known	0.76	179	58	179	58	y	0.70	130	56	130	56	y	0.49	44	46	44	46	y	0.71	199	82	199	82	y	0.71	295	118	295	118	y	0.61	44	28	44	28	y	0.79	248	66	248	66	y	0.56	93	73	93	73	y	0.75	214	72	214	72	y	0.72	304	117	304	117	y	0.78	220	61	220	61	y	0.75	286	97	286	97	y	ENSMUSG00000024070.16	Prkd3	chr17	protein_coding	protein kinase D3
known_NIR_8717	chr17	79359817	79378102	+	79359817;79371503	79371357;79378102	ES	ENSMUST00000040789.6	known	0.00	0	26.5	0	25;28	n	0.00	0	21.0	0	21;21	n	0.14	6	35.5	6	31;40	y	0.00	0	30.5	0	30;31	n	0.02	1	58.5	1	61;56	n	0.00	0	18.0	0	17;19	n	0.02	1	43.0	1	39;47	n	0.04	1	23.5	1	20;27	n	0.07	2	25.5	2	22;29	y	0.03	1	35.5	1	27;44	n	0.00	0	21.5	0	20;23	n	0.12	3	21.0	3	22;20	y	ENSMUSG00000024084.9	Qpct	chr17	protein_coding	glutaminyl-peptide cyclotransferase (glutaminyl cyclase)
known_NIR_8718	chr17	79922797	79928735	+	79921542	79928735	A5SS	ENSMUST00000224014.2	known	0.95	55	3	55	3	y	1.00	36	0	36	0	n	0.98	45	1	45	1	n	1.00	77	0	77	0	n	0.97	65	2	65	2	y	1.00	35	0	35	0	n	1.00	68	0	68	0	n	1.00	45	0	45	0	n	1.00	51	0	51	0	n	0.97	68	2	68	2	y	1.00	58	0	58	0	n	1.00	53	0	53	0	n	ENSMUSG00000036368.9	Rmdn2	chr17	protein_coding	regulator of microtubule dynamics 2
known_NIR_8719	chr17	79922797	79928735	+	79922416	79928735	A5SS	ENSMUST00000040368.3	known	0.96	55	2	55	2	y	1.00	36	0	36	0	n	0.98	45	1	45	1	n	1.00	77	0	77	0	n	1.00	65	0	65	0	n	0.97	35	1	35	1	n	0.94	68	4	68	4	y	1.00	45	0	45	0	n	0.96	51	2	51	2	y	0.97	68	2	68	2	y	1.00	58	0	58	0	n	0.96	53	2	53	2	y	ENSMUSG00000036368.9	Rmdn2	chr17	protein_coding	regulator of microtubule dynamics 2
known_NIR_8720	chr17	79929201	79934891	+	79929201	79957731	A3SS	ENSMUST00000040368.3	known	0.00	0	61	0	61	n	0.00	0	54	0	54	n	0.02	1	58	1	58	n	0.00	0	62	0	62	n	0.00	0	109	0	109	n	0.05	2	35	2	35	y	0.00	0	75	0	75	n	0.00	0	45	0	45	n	0.00	0	63	0	63	n	0.07	6	80	6	80	y	0.00	0	61	0	61	n	0.00	0	60	0	60	n	ENSMUSG00000036368.9	Rmdn2	chr17	protein_coding	regulator of microtubule dynamics 2
known_NIR_8721	chr17	79929201	79957731	+	79929201;79935808	79934891;79957731	ES	ENSMUST00000086570.3	known	0.89	61	7.5	61	0;15	n	0.97	54	1.5	54	0;3	n	0.94	58	3.5	58	1;6	n	0.88	62	8.5	62	0;17	n	0.92	109	9.5	109	0;19	n	0.91	35	3.5	35	2;5	y	0.93	75	5.5	75	0;11	n	0.95	45	2.5	45	0;5	n	0.94	63	4.0	63	0;8	n	0.85	80	14.0	80	6;22	y	0.90	61	6.5	61	0;13	n	0.88	60	8.0	60	0;16	n	ENSMUSG00000036368.9	Rmdn2	chr17	protein_coding	regulator of microtubule dynamics 2
known_NIR_8722	chr17	79935808	79957731	+	79929201	79957731	A5SS	ENSMUST00000040368.3	known	0.20	15	61	15	61	y	0.05	3	54	3	54	y	0.09	6	58	6	58	y	0.22	17	62	17	62	y	0.15	19	109	19	109	y	0.12	5	35	5	35	y	0.13	11	75	11	75	y	0.10	5	45	5	45	y	0.11	8	63	8	63	y	0.22	22	80	22	80	y	0.18	13	61	13	61	y	0.21	16	60	16	60	y	ENSMUSG00000036368.9	Rmdn2	chr17	protein_coding	regulator of microtubule dynamics 2
known_NIR_8723	chr17	79989111	79992095	+	79989111	80000520	A3SS	ENSMUST00000226004.2	known	1.00	24	0	24	0	n	1.00	18	0	18	0	n	1.00	29	0	29	0	n	0.97	31	1	31	1	n	1.00	24	0	24	0	n	0.94	16	1	16	1	n	0.94	30	2	30	2	y	1.00	20	0	20	0	n	1.00	36	0	36	0	n	1.00	35	0	35	0	n	1.00	31	0	31	0	n	1.00	42	0	42	0	n	ENSMUSG00000036368.9	Rmdn2	chr17	protein_coding	regulator of microtubule dynamics 2
known_NIR_8724	chr17	80157707;80159218	80159144;80159954	-	80157707	80159954	cassetteExon	ENSMUST00000068282.7	known	0.00	1.0	235	2;0	235	n	0.00	1.0	215	1;1	215	n	0.00	0.0	341	0;0	341	n	0.00	0.0	258	0;0	258	n	0.00	0.0	288	0;0	288	n	0.01	2.0	205	2;2	205	y	0.00	0.0	335	0;0	335	n	0.00	0.0	156	0;0	156	n	0.00	1.0	202	1;1	202	n	0.00	0.0	296	0;0	296	n	0.00	0.5	236	0;1	236	n	0.00	0.0	225	0;0	225	n	ENSMUSG00000059811.14	Atl2	chr17	protein_coding	atlastin GTPase 2
known_NIR_8725	chr17	80172605	80203338	-	80172605;80183475	80183231;80203338	ES	ENSMUST00000068282.7	known	0.01	1	125.0	1	141;109	n	0.01	1	78.5	1	94;63	n	0.01	3	205.0	3	240;170	y	0.02	4	170.5	4	184;157	y	0.01	1	188.0	1	209;167	n	0.01	1	122.0	1	135;109	n	0.02	4	186.5	4	203;170	y	0.03	3	111.5	3	134;89	y	0.00	0	108.5	0	149;68	n	0.04	8	188.5	8	211;166	y	0.00	0	101.5	0	129;74	n	0.00	0	149.0	0	171;127	n	ENSMUSG00000059811.14	Atl2	chr17	protein_coding	atlastin GTPase 2
known_NIR_8726	chr17	80172605	80203338	-	80183475	80203338	3pMXE	ENSMUST00000222243.2	known	0.01	1	109	1	109	n	0.02	1	63	1	63	n	0.02	3	170	3	170	y	0.02	4	157	4	157	y	0.01	1	167	1	167	n	0.01	1	109	1	109	n	0.02	4	170	4	170	y	0.03	3	89	3	89	y	0.00	0	68	0	68	n	0.05	8	166	8	166	y	0.00	0	74	0	74	n	0.00	0	127	0	127	n	ENSMUSG00000059811.14	Atl2	chr17	protein_coding	atlastin GTPase 2
known_NIR_8727	chr17	80351994;80352451	80352369;80356037	-	80351994	80356037	cassetteExon	ENSMUST00000184635.8	known	0.21	7.5	29	6;9	29	y	0.25	6.5	20	6;7	20	y	0.12	10.0	70	8;12	70	y	0.18	9.5	44	11;8	44	y	0.16	12.0	64	10;14	64	y	0.17	4.5	22	5;4	22	y	0.11	6.0	48	3;9	48	y	0.19	6.0	26	5;7	26	y	0.10	5.5	48	5;6	48	y	0.05	3.0	52	4;2	52	y	0.10	4.5	41	3;6	41	y	0.12	8.0	58	6;10	58	y	ENSMUSG00000024095.16	Hnrnpll	chr17	protein_coding	heterogeneous nuclear ribonucleoprotein L-like
known_NIR_8728	chr17	80509031	80510120	-	80509031;80509633	80509598;80510120	ES	ENSMUST00000063417.11	known	0.12	13	95.0	13	89;101	y	0.12	14	107.0	14	103;111	y	0.05	7	121.5	7	116;127	y	0.11	10	85.0	10	77;93	y	0.12	16	115.0	16	107;123	y	0.08	5	56.5	5	52;61	y	0.08	11	119.5	11	100;139	y	0.04	2	50.0	2	45;55	y	0.07	7	86.5	7	79;94	y	0.06	8	118.5	8	111;126	y	0.06	6	98.0	6	88;108	y	0.11	13	104.0	13	91;117	y	ENSMUSG00000024097.12	Srsf7	chr17	protein_coding	serine and arginine-rich splicing factor 7
known_NIR_8729	chr17	80510173	80511560	-	80510173	80511551	A5SS	ENSMUST00000063417.11	known	0.48	41	45	41	45	y	0.48	46	49	46	49	y	0.62	37	23	37	23	y	0.46	31	37	31	37	y	0.60	55	37	55	37	y	0.51	27	26	27	26	y	0.55	51	42	51	42	y	0.56	25	20	25	20	y	0.51	38	37	38	37	y	0.45	35	43	35	43	y	0.69	47	21	47	21	y	0.58	51	37	51	37	y	ENSMUSG00000024097.12	Srsf7	chr17	protein_coding	serine and arginine-rich splicing factor 7
known_NIR_8730	chr17	80510173	80511584	-	80510173	80511551	A5SS	ENSMUST00000063417.11	known	0.31	20	45	20	45	y	0.27	18	49	18	49	y	0.39	15	23	15	23	y	0.29	15	37	15	37	y	0.21	10	37	10	37	y	0.26	9	26	9	26	y	0.26	15	42	15	42	y	0.29	8	20	8	20	y	0.14	6	37	6	37	y	0.33	21	43	21	43	y	0.30	9	21	9	21	y	0.27	14	37	14	37	y	ENSMUSG00000024097.12	Srsf7	chr17	protein_coding	serine and arginine-rich splicing factor 7
known_NIR_8731	chr17	80510173	80511584	-	80510173	80511560	A5SS	ENSMUST00000234503.2	known	0.33	20	41	20	41	y	0.28	18	46	18	46	y	0.29	15	37	15	37	y	0.33	15	31	15	31	y	0.15	10	55	10	55	y	0.25	9	27	9	27	y	0.23	15	51	15	51	y	0.24	8	25	8	25	y	0.14	6	38	6	38	y	0.38	21	35	21	35	y	0.16	9	47	9	47	y	0.22	14	51	14	51	y	ENSMUSG00000024097.12	Srsf7	chr17	protein_coding	serine and arginine-rich splicing factor 7
known_NIR_8732	chr17	80511816;80512510	80512051;80512691	-	80511816	80512691	cassetteExon	ENSMUST00000063417.11	known	0.09	5.0	51	1;9	51	n	0.18	8.0	36	8;8	36	y	0.23	11.5	39	9;14	39	y	0.11	6.0	47	2;10	47	y	0.12	7.5	57	6;9	57	y	0.12	5.0	36	4;6	36	y	0.22	15.0	53	10;20	53	y	0.12	4.0	28	1;7	28	n	0.13	3.5	23	4;3	23	y	0.16	9.0	47	7;11	47	y	0.24	6.5	21	8;5	21	y	0.24	11.5	37	10;13	37	y	ENSMUSG00000024097.12	Srsf7	chr17	protein_coding	serine and arginine-rich splicing factor 7
known_NIR_8733	chr17	80533193	80535167	+	80533193	80533954	3pMXE	ENSMUST00000156869.2	known	0.93	26	2	26	2	y	0.91	31	3	31	3	y	0.98	48	1	48	1	n	0.92	24	2	24	2	y	0.93	42	3	42	3	y	0.95	20	1	20	1	n	0.85	29	5	29	5	y	0.83	10	2	10	2	y	0.71	15	6	15	6	y	0.87	34	5	34	5	y	0.86	32	5	32	5	y	0.81	26	6	26	6	y	ENSMUSG00000055760.13	Gemin6	chr17	protein_coding	gem nuclear organelle associated protein 6
known_NIR_8734	chr17	80583464;80585810	80585652;80588625	-	80583464	80588625	cassetteExon	ENSMUST00000038166.9	known	1.00	2.5	0	1;4	0	n	1.00	2.5	0	4;1	0	n	1.00	7.5	0	7;8	0	n	0.69	4.5	2	5;4	2	y	1.00	9.0	0	11;7	0	n	1.00	3.5	0	1;6	0	n	1.00	6.5	0	4;9	0	n	1.00	3.0	0	2;4	0	n	1.00	3.0	0	2;4	0	n	1.00	9.5	0	11;8	0	n	1.00	4.5	0	4;5	0	n	1.00	5.0	0	6;4	0	n	ENSMUSG00000035051.16	Dhx57	chr17	protein_coding	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57
known_NIR_8735	chr17	80588857	80597156	-	80588857	80597485	A5SS	ENSMUST00000038166.9	known	0.67	6	3	6	3	n	0.67	2	1	2	1	n	0.33	2	4	2	4	n	0.67	4	2	4	2	n	0.50	5	5	5	5	y	0.75	6	2	6	2	n	0.50	3	3	3	3	n	1.00	14	0	14	0	n	0.50	1	1	1	1	n	0.50	2	2	2	2	n	1.00	2	0	2	0	n	0.57	4	3	4	3	n	ENSMUSG00000035051.16	Dhx57	chr17	protein_coding	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57
known_NIR_8736	chr17	80931543	80937844	-	80931543;80936777	80936715;80937844	ES	ENSMUST00000112389.9	known	0.82	9	2.0	9	2;2	y	0.64	15	8.5	15	6;11	y	0.43	30	39.5	30	44;35	y	0.60	19	12.5	19	11;14	y	0.36	10	17.5	10	19;16	y	0.53	15	13.5	15	14;13	y	0.46	19	22.0	19	18;26	y	0.49	15	15.5	15	15;16	y	0.52	20	18.5	20	15;22	y	0.64	33	18.5	33	14;23	y	0.46	13	15.5	13	13;18	y	0.62	29	17.5	29	14;21	y	ENSMUSG00000024242.16	Map4k3	chr17	protein_coding	mitogen-activated protein kinase kinase kinase kinase 3
known_NIR_8737	chr17	8171468	8188979	+	8171465	8188979	A5SS	ENSMUST00000232223.2	known	1.00	1	0	1	0	n	0.71	5	2	5	2	n	1.00	10	0	10	0	n	1.00	6	0	6	0	n	0.89	8	1	8	1	n	1.00	4	0	4	0	n	0.83	5	1	5	1	n	1.00	6	0	6	0	n	1.00	6	0	6	0	n	0.90	9	1	9	1	n	0.70	7	3	7	3	y	0.75	9	3	9	3	y	ENSMUSG00000073471.4	Rsph3a	chr17	protein_coding	radial spoke 3A homolog (Chlamydomonas)
known_NIR_8738	chr17	83527585	83528482	+	83527585	83528395	A3SS	ENSMUST00000170794.8	known	0.00	0	35	0	35	n	0.00	0	44	0	44	n	0.00	0	59	0	59	n	0.00	0	47	0	47	n	0.03	2	71	2	71	y	0.00	0	35	0	35	n	0.02	1	59	1	59	n	0.00	0	52	0	52	n	0.07	3	40	3	40	y	0.03	2	59	2	59	y	0.02	1	49	1	49	n	0.03	2	57	2	57	y	ENSMUSG00000024247.15	Pkdcc	chr17	protein_coding	protein kinase domain containing, cytoplasmic
known_NIR_8739	chr17	83528666	83528906	+	83528666	83529219	A3SS	ENSMUST00000170794.8	known	0.00	0	40	0	40	n	0.00	0	53	0	53	n	0.01	1	68	1	68	n	0.02	1	60	1	60	n	0.00	0	69	0	69	n	0.00	0	32	0	32	n	0.00	0	51	0	51	n	0.00	0	49	0	49	n	0.00	0	41	0	41	n	0.02	2	81	2	81	y	0.00	0	47	0	47	n	0.01	1	80	1	80	n	ENSMUSG00000024247.15	Pkdcc	chr17	protein_coding	protein kinase domain containing, cytoplasmic
known_NIR_8740	chr17	83810166;83811428	83811360;83811529	-	83810166	83811529	cassetteExon	ENSMUST00000025095.9	known	0.06	38.0	548	32;44	548	y	0.05	25.5	500	24;27	500	y	0.04	23.0	514	22;24	514	y	0.06	37.5	542	30;45	542	y	0.06	39.5	614	41;38	614	y	0.05	16.0	307	16;16	307	y	0.05	37.5	696	35;40	696	y	0.05	15.0	315	12;18	315	y	0.04	21.5	485	15;28	485	y	0.06	45.0	695	47;43	695	y	0.06	33.5	546	37;30	546	y	0.05	37.5	701	35;40	701	y	ENSMUSG00000024248.15	Cox7a2l	chr17	protein_coding	cytochrome c oxidase subunit 7A2 like
known_NIR_8741	chr17	8391840	8401060	+	8391840	8394351	3pMXE	ENSMUST00000162586.2	known	0.92	36	3	36	3	y	0.92	24	2	24	2	y	0.85	40	7	40	7	y	0.94	30	2	30	2	y	0.91	32	3	32	3	y	0.88	22	3	22	3	y	0.89	42	5	42	5	y	0.93	25	2	25	2	y	1.00	28	0	28	0	n	0.92	35	3	35	3	y	1.00	25	0	25	0	n	1.00	42	0	42	0	n	ENSMUSG00000069135.12	Cep43	chr17	protein_coding	centrosomal protein 43
known_NIR_8742	chr17	8391840	8401060	+	8391840;8394410	8394351;8401060	ES	ENSMUST00000097419.10	known	0.94	36	2.5	36	3;2	y	0.94	24	1.5	24	2;1	n	0.87	40	6.0	40	7;5	y	0.95	30	1.5	30	2;1	n	0.89	32	4.0	32	3;5	y	0.94	22	1.5	22	3;0	n	0.88	42	5.5	42	5;6	y	0.93	25	2.0	25	2;2	y	0.95	28	1.5	28	0;3	n	0.91	35	3.5	35	3;4	y	0.96	25	1.0	25	0;2	n	1.00	42	0.0	42	0;0	n	ENSMUSG00000069135.12	Cep43	chr17	protein_coding	centrosomal protein 43
known_NIR_8743	chr17	84091764	84096347	+	84091764	84096350	A3SS	ENSMUST00000112350.8	known	0.42	15	21	15	21	y	0.19	5	21	5	21	y	0.30	13	30	13	30	y	0.19	6	25	6	25	y	0.34	18	35	18	35	y	0.27	7	19	7	19	y	0.44	19	24	19	24	y	0.35	8	15	8	15	y	0.19	4	17	4	17	y	0.29	14	34	14	34	y	0.25	7	21	7	21	y	0.39	14	22	14	22	y	ENSMUSG00000055817.19	Mta3	chr17	protein_coding	metastasis associated 3
known_NIR_8744	chr17	8410269	8413353	+	8410269;8411113	8411017;8413353	ES	ENSMUST00000097419.10	known	0.00	0	33.0	0	29;37	n	0.12	3	23.0	3	22;24	y	0.12	6	42.0	6	42;42	y	0.29	11	27.0	11	19;35	y	0.20	9	37.0	9	39;35	y	0.18	5	22.5	5	23;22	y	0.13	5	34.0	5	43;25	y	0.13	3	20.5	3	24;17	y	0.11	4	32.0	4	35;29	y	0.20	10	39.0	10	39;39	y	0.15	4	23.0	4	20;26	y	0.12	5	37.5	5	32;43	y	ENSMUSG00000069135.12	Cep43	chr17	protein_coding	centrosomal protein 43
known_NIR_8745	chr17	84112026	84122065	+	84112026	84125791	A3SS	ENSMUST00000177069.8	known	0.94	17	1	17	1	n	1.00	12	0	12	0	n	1.00	8	0	8	0	n	1.00	14	0	14	0	n	0.91	20	2	20	2	y	1.00	8	0	8	0	n	0.94	16	1	16	1	n	1.00	5	0	5	0	n	1.00	18	0	18	0	n	1.00	14	0	14	0	n	1.00	12	0	12	0	n	1.00	14	0	14	0	n	ENSMUSG00000055817.19	Mta3	chr17	protein_coding	metastasis associated 3
known_NIR_8746	chr17	84139824	84142208	-	84139824	84150625	A5SS	ENSMUST00000234214.2	known	1.00	1468	3	1468	3	y	1.00	1528	3	1528	3	y	1.00	540	2	540	2	y	1.00	1503	6	1503	6	y	1.00	1655	3	1655	3	y	1.00	464	0	464	0	n	1.00	1569	4	1569	4	y	1.00	613	2	613	2	y	0.99	1498	8	1498	8	y	1.00	2261	8	2261	8	y	0.99	1890	11	1890	11	y	1.00	2026	4	2026	4	y	ENSMUSG00000000673.10	Haao	chr17	protein_coding	3-hydroxyanthranilate 3,4-dioxygenase
known_NIR_8747	chr17	84146313	84150625	-	84139824	84150625	A3SS	ENSMUST00000234214.2	known	1.00	1342	3	1342	3	y	1.00	1149	3	1149	3	y	1.00	474	2	474	2	y	1.00	1583	6	1583	6	y	1.00	1512	3	1512	3	y	1.00	410	0	410	0	n	1.00	1414	4	1414	4	y	1.00	652	2	652	2	y	0.99	1452	8	1452	8	y	1.00	1956	8	1956	8	y	0.99	1525	11	1525	11	y	1.00	1901	4	1901	4	y	ENSMUSG00000000673.10	Haao	chr17	protein_coding	3-hydroxyanthranilate 3,4-dioxygenase
known_NIR_8748	chr17	84146313;84150376	84150280;84150625	-	84146313	84150625	cassetteExon	ENSMUST00000000687.9	known	0.02	30.0	1342	27;33	1342	y	0.02	21.0	1149	18;24	1149	y	0.03	12.5	474	10;15	474	y	0.01	19.0	1583	16;22	1583	y	0.02	31.0	1512	32;30	1512	y	0.04	15.5	410	12;19	410	y	0.02	24.0	1414	25;23	1414	y	0.02	14.0	652	13;15	652	y	0.02	34.5	1452	32;37	1452	y	0.02	37.0	1956	31;43	1956	y	0.02	30.0	1525	26;34	1525	y	0.02	31.0	1901	27;35	1901	y	ENSMUSG00000000673.10	Haao	chr17	protein_coding	3-hydroxyanthranilate 3,4-dioxygenase
known_NIR_8749	chr17	84150376	84150625	-	84139824	84150625	A3SS	ENSMUST00000234214.2	known	0.92	33	3	33	3	y	0.89	24	3	24	3	y	0.88	15	2	15	2	y	0.79	22	6	22	6	y	0.91	30	3	30	3	y	1.00	19	0	19	0	n	0.85	23	4	23	4	y	0.88	15	2	15	2	y	0.82	37	8	37	8	y	0.84	43	8	43	8	y	0.76	34	11	34	11	y	0.90	35	4	35	4	y	ENSMUSG00000000673.10	Haao	chr17	protein_coding	3-hydroxyanthranilate 3,4-dioxygenase
known_NIR_8750	chr17	84150767	84154066	-	84150703	84154066	A3SS	ENSMUST00000000687.9	known	0.01	21	1486	21	1486	y	0.01	16	1253	16	1253	y	0.02	13	552	13	552	y	0.01	27	1796	27	1796	y	0.02	30	1648	30	1648	y	0.02	10	474	10	474	y	0.02	38	1548	38	1548	y	0.01	9	679	9	679	y	0.01	25	1668	25	1668	y	0.01	32	2280	32	2280	y	0.01	21	1669	21	1669	y	0.02	40	2078	40	2078	y	ENSMUSG00000000673.10	Haao	chr17	protein_coding	3-hydroxyanthranilate 3,4-dioxygenase
known_NIR_8751	chr17	84444019	84444307	-	84444103	84444307	A3SS	ENSMUST00000234314.2	known	0.40	2	3	2	3	n	0.27	3	8	3	8	y	0.00	0	4	0	4	n	0.43	3	4	3	4	n	0.33	4	8	4	8	y	0.00	0	3	0	3	n	0.47	7	8	7	8	y	0.29	2	5	2	5	n	0.67	4	2	4	2	n	0.42	5	7	5	7	y	0.50	4	4	4	4	n	0.50	7	7	7	7	y	ENSMUSG00000117485.2	Gm19696	chr17	lncRNA	predicted gene, 19696
known_NIR_8752	chr17	84444103	84444622	-	84444103	84444307	A5SS&ES	ENSMUST00000234314.2	known	0.00	0	3	0	3	n	0.11	1	8	1	8	n	0.00	0	4	0	4	n	0.33	2	4	2	4	n	0.43	6	8	6	8	y	0.62	5	3	5	3	n	0.43	6	8	6	8	y	0.38	3	5	3	5	n	0.71	5	2	5	2	n	0.22	2	7	2	7	n	0.50	4	4	4	4	n	0.30	3	7	3	7	y	ENSMUSG00000117485.2	Gm19696	chr17	lncRNA	predicted gene, 19696
known_NIR_8753	chr17	84990722	84994048	+	84990722	84994045	A3SS	ENSMUST00000045714.15	known	0.57	43	32	43	32	y	0.56	39	31	39	31	y	0.49	59	61	59	61	y	0.58	68	49	68	49	y	0.67	90	45	90	45	y	0.63	33	19	33	19	y	0.55	57	46	57	46	y	0.59	39	27	39	27	y	0.64	63	35	63	35	y	0.64	77	43	77	43	y	0.74	82	29	82	29	y	0.66	121	61	121	61	y	ENSMUSG00000024254.16	Abcg8	chr17	protein_coding	ATP binding cassette subfamily G member 8
known_NIR_8754	chr17	84994149;84996116	84995960;84999228	+	84994149	84999228	cassetteExon	ENSMUST00000170725.8	known	0.89	56.5	7	54;59	7	y	0.91	48.0	5	46;50	5	y	0.94	91.5	6	83;100	6	y	0.93	95.0	7	94;96	7	y	0.91	105.0	11	92;118	11	y	0.91	49.0	5	42;56	5	y	0.96	92.5	4	70;115	4	y	0.92	59.5	5	51;68	5	y	0.96	88.5	4	81;96	4	y	0.96	118.0	5	104;132	5	y	0.97	75.0	2	84;66	2	y	0.95	134.5	7	132;137	7	y	ENSMUSG00000024254.16	Abcg8	chr17	protein_coding	ATP binding cassette subfamily G member 8
known_NIR_8755	chr17	85047604	85056389	-	85047604;85048096	85047972;85056389	ES	ENSMUST00000112308.9	known	0.00	0	108.5	0	118;99	n	0.00	0	102.0	0	115;89	n	0.00	0	125.0	0	145;105	n	0.00	0	167.0	0	186;148	n	0.00	0	165.0	0	165;165	n	0.00	0	74.0	0	82;66	n	0.00	0	162.0	0	190;134	n	0.00	0	93.0	0	85;101	n	0.00	0	122.0	0	125;119	n	0.00	0	176.0	0	184;168	n	0.02	2	127.5	2	139;116	y	0.00	0	179.0	0	197;161	n	ENSMUSG00000024120.13	Lrpprc	chr17	protein_coding	leucine-rich PPR-motif containing
known_NIR_8756	chr17	8507570	8512247	+	8502793	8512247	A5SS	ENSMUST00000145402.8	known	0.00	0	778	0	778	n	0.00	0	720	0	720	n	0.00	2	421	2	421	y	-	-	-	-	-	-	0.01	8	962	8	962	y	0.00	0	372	0	372	n	0.00	0	874	0	874	n	0.00	0	403	0	403	n	0.01	6	664	6	664	y	0.00	0	1006	0	1006	n	0.00	0	924	0	924	n	0.00	0	848	0	848	n	ENSMUSG00000023861.18	Mpc1	chr17	protein_coding	mitochondrial pyruvate carrier 1
known_NIR_8757	chr17	85080530	85080632	-	85080530	85080636	A5SS	ENSMUST00000112308.9	known	0.00	0	58	0	58	n	0.00	0	32	0	32	n	0.01	1	94	1	94	n	0.04	4	104	4	104	y	0.01	1	92	1	92	n	0.00	0	48	0	48	n	0.00	0	84	0	84	n	0.03	2	77	2	77	y	0.00	0	63	0	63	n	0.00	0	110	0	110	n	0.00	0	67	0	67	n	0.01	1	102	1	102	n	ENSMUSG00000024120.13	Lrpprc	chr17	protein_coding	leucine-rich PPR-motif containing
known_NIR_8758	chr17	8512327	8515367	+	8512250	8515367	A5SS	ENSMUST00000145402.8	known	0.00	4	814	4	814	y	0.01	4	757	4	757	y	0.00	1	436	1	436	n	0.00	3	761	3	761	y	0.01	7	1016	7	1016	y	0.01	3	382	3	382	y	0.01	6	910	6	910	y	1.00	3	0	3	0	n	0.01	5	709	5	709	y	0.00	3	1068	3	1068	y	0.01	9	966	9	966	y	0.00	4	906	4	906	y	ENSMUSG00000023861.18	Mpc1	chr17	protein_coding	mitochondrial pyruvate carrier 1
known_NIR_8759	chr17	85262736	85264628	-	85262736	85264581	A5SS	ENSMUST00000234932.2	known	1.00	10	0	10	0	n	0.83	5	1	5	1	n	0.89	8	1	8	1	n	1.00	9	0	9	0	n	0.86	12	2	12	2	y	1.00	4	0	4	0	n	1.00	7	0	7	0	n	1.00	8	0	8	0	n	0.95	20	1	20	1	n	1.00	26	0	26	0	n	1.00	15	0	15	0	n	1.00	18	0	18	0	n	ENSMUSG00000097047.3	1110020A21Rik	chr17	lncRNA	RIKEN cDNA 1110020A21 gene
known_NIR_8760	chr17	85281549	85301108	+	85265822	85301108	A5SS	ENSMUST00000080217.14	known	0.02	2	111	2	111	y	0.01	1	68	1	68	n	0.00	0	87	0	87	n	0.00	0	144	0	144	n	0.00	0	133	0	133	n	0.00	0	55	0	55	n	0.00	0	156	0	156	n	0.00	0	52	0	52	n	0.00	0	111	0	111	n	0.00	0	162	0	162	n	0.00	0	98	0	98	n	0.00	0	183	0	183	n	ENSMUSG00000061130.14	Ppm1b	chr17	protein_coding	protein phosphatase 1B, magnesium dependent, beta isoform
known_NIR_8761	chr17	8530117	8537676	+	8530117	8539432	A3SS	ENSMUST00000130782.8	known	0.99	163	2	163	2	y	1.00	139	0	139	0	n	0.99	158	2	158	2	y	0.99	156	1	156	1	n	1.00	240	1	240	1	n	1.00	111	0	111	0	n	0.98	197	5	197	5	y	1.00	124	0	124	0	n	0.99	78	1	78	1	n	0.98	172	3	172	3	y	0.97	137	4	137	4	y	1.00	152	0	152	0	n	ENSMUSG00000073468.13	Sft2d1	chr17	protein_coding	SFT2 domain containing 1
known_NIR_8762	chr17	85312994	85320994	+	85312994	85331124	A3SS	ENSMUST00000112305.10	known	0.46	35	41	35	41	y	0.41	24	34	24	34	y	0.57	27	20	27	20	y	0.57	40	30	40	30	y	0.48	42	45	42	45	y	0.44	7	9	7	9	y	0.60	84	56	84	56	y	0.51	18	17	18	17	y	0.46	28	33	28	33	y	0.50	57	58	57	58	y	0.42	24	33	24	33	y	0.41	39	56	39	56	y	ENSMUSG00000061130.14	Ppm1b	chr17	protein_coding	protein phosphatase 1B, magnesium dependent, beta isoform
known_NIR_8763	chr17	85312994	85322837	+	85312994	85320994	3pMXE	ENSMUST00000080217.14	known	0.77	118	35	118	35	y	0.74	68	24	68	24	y	0.78	96	27	96	27	y	0.72	101	40	101	40	y	0.72	108	42	108	42	y	0.89	57	7	57	7	y	0.62	139	84	139	84	y	0.80	72	18	72	18	y	0.78	101	28	101	28	y	0.71	140	57	140	57	y	0.82	110	24	110	24	y	0.76	126	39	126	39	y	ENSMUSG00000061130.14	Ppm1b	chr17	protein_coding	protein phosphatase 1B, magnesium dependent, beta isoform
known_NIR_8764	chr17	85312994	85322837	+	85312994	85331124	A3SS	ENSMUST00000112305.10	known	0.74	118	41	118	41	y	0.67	68	34	68	34	y	0.83	96	20	96	20	y	0.77	101	30	101	30	y	0.71	108	45	108	45	y	0.86	57	9	57	9	y	0.71	139	56	139	56	y	0.81	72	17	72	17	y	0.75	101	33	101	33	y	0.71	140	58	140	58	y	0.77	110	33	110	33	y	0.69	126	56	126	56	y	ENSMUSG00000061130.14	Ppm1b	chr17	protein_coding	protein phosphatase 1B, magnesium dependent, beta isoform
known_NIR_8765	chr17	85312994	85330460	+	85312994	85320994	3pMXE	ENSMUST00000080217.14	known	0.26	12	35	12	35	y	0.23	7	24	7	24	y	0.23	8	27	8	27	y	0.17	8	40	8	40	y	0.18	9	42	9	42	y	0.36	4	7	4	7	y	0.10	9	84	9	84	y	0.25	6	18	6	18	y	0.22	8	28	8	28	y	0.16	11	57	11	57	y	0.35	13	24	13	24	y	0.20	10	39	10	39	y	ENSMUSG00000061130.14	Ppm1b	chr17	protein_coding	protein phosphatase 1B, magnesium dependent, beta isoform
known_NIR_8766	chr17	85312994	85330460	+	85312994	85322837	3pMXE	ENSMUST00000112304.10	known	0.09	12	118	12	118	y	0.09	7	68	7	68	y	0.08	8	96	8	96	y	0.07	8	101	8	101	y	0.08	9	108	9	108	y	0.07	4	57	4	57	y	0.06	9	139	9	139	y	0.08	6	72	6	72	y	0.07	8	101	8	101	y	0.07	11	140	11	140	y	0.11	13	110	13	110	y	0.07	10	126	10	126	y	ENSMUSG00000061130.14	Ppm1b	chr17	protein_coding	protein phosphatase 1B, magnesium dependent, beta isoform
known_NIR_8767	chr17	85312994;85330507	85330460;85331124	+	85312994	85331124	cassetteExon	ENSMUST00000112305.10	known	0.22	11.5	41	12;11	41	y	0.17	7.0	34	7;7	34	y	0.26	7.0	20	8;6	20	y	0.21	8.0	30	8;8	30	y	0.15	8.0	45	9;7	45	y	0.31	4.0	9	4;4	9	y	0.18	12.0	56	9;15	56	y	0.24	5.5	17	6;5	17	y	0.21	9.0	33	8;10	33	y	0.15	10.0	58	11;9	58	y	0.30	14.0	33	13;15	33	y	0.16	10.5	56	10;11	56	y	ENSMUSG00000061130.14	Ppm1b	chr17	protein_coding	protein phosphatase 1B, magnesium dependent, beta isoform
known_NIR_8768	chr17	8538333	8539432	+	8530117	8539432	A5SS	ENSMUST00000130782.8	known	0.99	175	2	175	2	y	1.00	176	0	176	0	n	0.99	198	2	198	2	y	0.99	156	1	156	1	n	1.00	247	1	247	1	n	1.00	128	0	128	0	n	0.98	275	5	275	5	y	1.00	138	0	138	0	n	0.99	95	1	95	1	n	0.99	252	3	252	3	y	0.98	175	4	175	4	y	1.00	172	0	172	0	n	ENSMUSG00000073468.13	Sft2d1	chr17	protein_coding	SFT2 domain containing 1
known_NIR_8769	chr17	85390743	85397534	-	85390743;85396303	85395768;85397534	ES	ENSMUST00000171795.9	known	0.16	4	21.5	4	25;18	y	0.11	2	16.5	2	17;16	y	0.24	9	28.5	9	32;25	y	0.00	0	24.5	0	24;25	n	0.26	10	28.0	10	28;28	y	0.31	8	18.0	8	18;18	y	0.00	0	34.5	0	40;29	n	0.30	7	16.0	7	15;17	y	0.24	8	25.5	8	35;16	y	0.25	10	30.0	10	31;29	y	0.07	1	14.0	1	16;12	n	0.08	2	24.0	2	30;18	y	ENSMUSG00000024127.16	Prepl	chr17	protein_coding	prolyl endopeptidase-like
known_NIR_8770	chr17	85390743;85395870	85395768;85397534	-	85390743	85397534	cassetteExon	ENSMUST00000072406.5	known	0.76	12.5	4	25;0	4	n	0.82	9.0	2	17;1	2	n	0.64	16.0	9	32;0	9	n	1.00	12.0	0	24;0	0	n	0.58	14.0	10	28;0	10	n	0.53	9.0	8	18;0	8	n	1.00	20.0	0	40;0	0	n	0.52	7.5	7	15;0	7	n	0.69	17.5	8	35;0	8	n	0.63	17.0	10	31;3	10	y	0.89	8.0	1	16;0	1	n	0.89	15.5	2	30;1	2	n	ENSMUSG00000024127.16	Prepl	chr17	protein_coding	prolyl endopeptidase-like
known_NIR_8771	chr17	85395870	85397534	-	85396303	85397534	A3SS	ENSMUST00000171795.9	known	0.00	0	18	0	18	n	0.06	1	16	1	16	n	0.00	0	25	0	25	n	0.00	0	25	0	25	n	0.00	0	28	0	28	n	0.00	0	18	0	18	n	0.00	0	29	0	29	n	0.00	0	17	0	17	n	0.00	0	16	0	16	n	0.09	3	29	3	29	y	0.00	0	12	0	12	n	0.05	1	18	1	18	n	ENSMUSG00000024127.16	Prepl	chr17	protein_coding	prolyl endopeptidase-like
known_NIR_8772	chr17	85396303	85397534	-	85390743	85397534	A3SS	ENSMUST00000072406.5	known	0.82	18	4	18	4	y	0.89	16	2	16	2	y	0.74	25	9	25	9	y	1.00	25	0	25	0	n	0.74	28	10	28	10	y	0.69	18	8	18	8	y	1.00	29	0	29	0	n	0.71	17	7	17	7	y	0.67	16	8	16	8	y	0.74	29	10	29	10	y	0.92	12	1	12	1	n	0.90	18	2	18	2	y	ENSMUSG00000024127.16	Prepl	chr17	protein_coding	prolyl endopeptidase-like
known_NIR_8773	chr17	8540972	8542109	+	8540667	8542109	A5SS	ENSMUST00000154553.2	known	0.00	0	145	0	145	n	0.01	1	157	1	157	n	0.01	1	154	1	154	n	0.00	0	138	0	138	n	0.02	4	217	4	217	y	0.00	0	126	0	126	n	0.00	1	221	1	221	n	0.00	0	138	0	138	n	0.00	0	107	0	107	n	0.00	0	200	0	200	n	0.00	0	170	0	170	n	0.00	0	148	0	148	n	ENSMUSG00000073468.13	Sft2d1	chr17	protein_coding	SFT2 domain containing 1
known_NIR_8774	chr17	86410428	86422621	-	86410428;86416762	86416655;86422621	ES	ENSMUST00000095187.4	known	0.05	1	19.5	1	18;21	n	0.00	0	7.0	0	11;3	n	0.00	0	4.5	0	3;6	n	0.00	0	27.0	0	28;26	n	0.06	1	16.0	1	17;15	n	0.00	0	5.0	0	4;6	n	0.11	2	17.0	2	18;16	y	0.17	1	5.0	1	6;4	n	0.00	0	18.5	0	14;23	n	0.00	0	14.5	0	14;15	n	0.00	0	12.0	0	9;15	n	0.00	0	13.5	0	16;11	n	ENSMUSG00000024135.11	Srbd1	chr17	protein_coding	S1 RNA binding domain 1
known_NIR_8775	chr17	86427477	86427582	-	86427477	86428078	A5SS	ENSMUST00000095187.4	known	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	18	0	18	n	0.00	0	14	0	14	n	0.15	2	11	2	11	y	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.05	1	19	1	19	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	ENSMUSG00000024135.11	Srbd1	chr17	protein_coding	S1 RNA binding domain 1
known_NIR_8776	chr17	87333081	87335127	+	87333103	87335127	A5SS	ENSMUST00000024959.10	known	0.01	1	134	1	134	n	0.02	2	117	2	117	y	0.01	1	130	1	130	n	0.03	4	129	4	129	y	0.02	3	168	3	168	y	0.00	0	77	0	77	n	0.02	3	194	3	194	y	0.02	2	85	2	85	y	0.02	3	139	3	139	y	0.02	3	167	3	167	y	0.03	5	147	5	147	y	0.03	4	135	4	135	y	ENSMUSG00000024146.10	Cript	chr17	protein_coding	cysteine-rich PDZ-binding protein
known_NIR_8777	chr17	87565517	87571569	-	87565517	87566178	A5SS&ES	ENSMUST00000129616.8	known	0.02	3	126	3	126	y	0.10	15	138	15	138	y	0.05	22	404	22	404	y	0.04	7	149	7	149	y	0.06	17	260	17	260	y	0.06	15	233	15	233	y	0.08	18	209	18	209	y	0.10	23	207	23	207	y	0.05	7	123	7	123	y	0.03	6	167	6	167	y	0.05	8	145	8	145	y	0.04	7	151	7	151	y	ENSMUSG00000024150.13	Mcfd2	chr17	protein_coding	multiple coagulation factor deficiency 2
known_NIR_8778	chr17	87565517	87571569	-	87566309	87571569	3pMXE	ENSMUST00000139258.2	known	0.43	3	4	3	4	n	0.65	15	8	15	8	y	0.65	22	12	22	12	y	0.88	7	1	7	1	n	0.68	17	8	17	8	y	0.79	15	4	15	4	y	0.72	18	7	18	7	y	0.85	23	4	23	4	y	0.58	7	5	7	5	y	1.00	6	0	6	0	n	0.62	8	5	8	5	y	0.58	7	5	7	5	y	ENSMUSG00000024150.13	Mcfd2	chr17	protein_coding	multiple coagulation factor deficiency 2
known_NIR_8779	chr17	87565517	87573220	-	87565517	87566178	A5SS&ES	ENSMUST00000151155.8	known	0.24	40	126	40	126	y	0.25	46	138	46	138	y	0.13	58	404	58	404	y	0.27	55	149	55	149	y	0.30	114	260	114	260	y	0.20	57	233	57	233	y	0.23	64	209	64	209	y	0.23	62	207	62	207	y	0.23	36	123	36	123	y	0.25	55	167	55	167	y	0.26	50	145	50	145	y	0.18	33	151	33	151	y	ENSMUSG00000024150.13	Mcfd2	chr17	protein_coding	multiple coagulation factor deficiency 2
known_NIR_8780	chr17	87565517	87573220	-	87565517	87571569	A5SS&ES	ENSMUST00000144236.9	known	0.93	40	3	40	3	y	0.75	46	15	46	15	y	0.72	58	22	58	22	y	0.89	55	7	55	7	y	0.87	114	17	114	17	y	0.79	57	15	57	15	y	0.78	64	18	64	18	y	0.73	62	23	62	23	y	0.84	36	7	36	7	y	0.90	55	6	55	6	y	0.86	50	8	50	8	y	0.82	33	7	33	7	y	ENSMUSG00000024150.13	Mcfd2	chr17	protein_coding	multiple coagulation factor deficiency 2
known_NIR_8781	chr17	87565517	87573220	-	87565517	87573263	A5SS	ENSMUST00000024963.11	known	0.16	40	208	40	208	y	0.22	46	161	46	161	y	0.18	58	256	58	256	y	0.23	55	183	55	183	y	0.23	114	372	114	372	y	0.21	57	219	57	219	y	0.19	64	276	64	276	y	0.22	62	223	62	223	y	0.20	36	140	36	140	y	0.18	55	248	55	248	y	0.22	50	180	50	180	y	0.14	33	195	33	195	y	ENSMUSG00000024150.13	Mcfd2	chr17	protein_coding	multiple coagulation factor deficiency 2
known_NIR_8782	chr17	87565517	87573220	-	87565517;87566309	87566178;87573220	ES	ENSMUST00000129616.8	known	0.37	40	69.5	40	126;13	y	0.37	46	77.0	46	138;16	y	0.21	58	221.5	58	404;39	y	0.39	55	87.5	55	149;26	y	0.44	114	147.0	114	260;34	y	0.30	57	133.0	57	233;33	y	0.36	64	115.5	64	209;22	y	0.34	62	118.0	62	207;29	y	0.33	36	72.0	36	123;21	y	0.37	55	95.0	55	167;23	y	0.40	50	76.5	50	145;8	y	0.29	33	82.0	33	151;13	y	ENSMUSG00000024150.13	Mcfd2	chr17	protein_coding	multiple coagulation factor deficiency 2
known_NIR_8783	chr17	87565517	87573263	-	87565517	87566178	A5SS&ES	ENSMUST00000129616.8	known	0.62	208	126	208	126	y	0.54	161	138	161	138	y	0.39	256	404	256	404	y	0.55	183	149	183	149	y	0.59	372	260	372	260	y	0.48	219	233	219	233	y	0.57	276	209	276	209	y	0.52	223	207	223	207	y	0.53	140	123	140	123	y	0.60	248	167	248	167	y	0.55	180	145	180	145	y	0.56	195	151	195	151	y	ENSMUSG00000024150.13	Mcfd2	chr17	protein_coding	multiple coagulation factor deficiency 2
known_NIR_8784	chr17	87565517;87566309	87566178;87571569	-	87565517	87571569	cassetteExon	ENSMUST00000144236.9	known	0.96	65.0	3	126;4	3	y	0.83	73.0	15	138;8	15	y	0.90	208.0	22	404;12	22	y	0.91	75.0	7	149;1	7	n	0.89	134.0	17	260;8	17	y	0.89	118.5	15	233;4	15	y	0.86	108.0	18	209;7	18	y	0.82	105.5	23	207;4	23	y	0.90	64.0	7	123;5	7	y	0.93	83.5	6	167;0	6	n	0.90	75.0	8	145;5	8	y	0.92	78.0	7	151;5	7	y	ENSMUSG00000024150.13	Mcfd2	chr17	protein_coding	multiple coagulation factor deficiency 2
known_NIR_8785	chr17	87565517;87566309	87566178;87573263	-	87565517	87573263	cassetteExon	ENSMUST00000024963.11	known	0.30	89.5	208	126;53	208	y	0.36	91.5	161	138;45	161	y	0.52	277.0	256	404;150	256	y	0.35	99.0	183	149;49	183	y	0.33	184.0	372	260;108	372	y	0.42	156.0	219	233;79	219	y	0.33	138.5	276	209;68	276	y	0.39	142.0	223	207;77	223	y	0.37	83.5	140	123;44	140	y	0.34	126.0	248	167;85	248	y	0.35	98.0	180	145;51	180	y	0.36	107.5	195	151;64	195	y	ENSMUSG00000024150.13	Mcfd2	chr17	protein_coding	multiple coagulation factor deficiency 2
known_NIR_8786	chr17	87565517;87566309	87566178;87573263	-	87565517;87571793	87571569;87573263	MXE	ENSMUST00000144236.9	known	0.97	89.5	2.5	126;53	3;2	y	0.90	91.5	10.0	138;45	15;5	y	0.94	277.0	16.5	404;150	22;11	y	0.94	99.0	6.0	149;49	7;5	y	0.93	184.0	14.0	260;108	17;11	y	0.93	156.0	11.5	233;79	15;8	y	0.93	138.5	10.5	209;68	18;3	y	0.90	142.0	15.5	207;77	23;8	y	0.95	83.5	4.0	123;44	7;1	n	0.94	126.0	8.0	167;85	6;10	y	0.96	98.0	4.0	145;51	8;0	n	0.95	107.5	5.5	151;64	7;4	y	ENSMUSG00000024150.13	Mcfd2	chr17	protein_coding	multiple coagulation factor deficiency 2
known_NIR_8787	chr17	87565517;87571793	87571569;87573263	-	87565517	87573263	cassetteExon	ENSMUST00000024963.11	known	0.01	2.5	208	3;2	208	y	0.06	10.0	161	15;5	161	y	0.06	16.5	256	22;11	256	y	0.03	6.0	183	7;5	183	y	0.04	14.0	372	17;11	372	y	0.05	11.5	219	15;8	219	y	0.04	10.5	276	18;3	276	y	0.06	15.5	223	23;8	223	y	0.03	4.0	140	7;1	140	n	0.03	8.0	248	6;10	248	y	0.02	4.0	180	8;0	180	n	0.03	5.5	195	7;4	195	y	ENSMUSG00000024150.13	Mcfd2	chr17	protein_coding	multiple coagulation factor deficiency 2
known_NIR_8788	chr17	87566309	87571569	-	87566309	87573220	A5SS	ENSMUST00000129616.8	known	0.24	4	13	4	13	y	0.33	8	16	8	16	y	0.24	12	39	12	39	y	0.04	1	26	1	26	n	0.19	8	34	8	34	y	0.11	4	33	4	33	y	0.24	7	22	7	22	y	0.12	4	29	4	29	y	0.19	5	21	5	21	y	0.00	0	23	0	23	n	0.38	5	8	5	8	y	0.28	5	13	5	13	y	ENSMUSG00000024150.13	Mcfd2	chr17	protein_coding	multiple coagulation factor deficiency 2
known_NIR_8789	chr17	87566309	87573263	-	87566309	87573220	A5SS	ENSMUST00000129616.8	known	0.80	53	13	53	13	y	0.74	45	16	45	16	y	0.79	150	39	150	39	y	0.65	49	26	49	26	y	0.76	108	34	108	34	y	0.71	79	33	79	33	y	0.76	68	22	68	22	y	0.73	77	29	77	29	y	0.68	44	21	44	21	y	0.79	85	23	85	23	y	0.86	51	8	51	8	y	0.83	64	13	64	13	y	ENSMUSG00000024150.13	Mcfd2	chr17	protein_coding	multiple coagulation factor deficiency 2
known_NIR_8790	chr17	87566309;87571793	87571569;87573263	-	87566309	87573263	cassetteExon	ENSMUST00000151155.8	known	0.05	3.0	53	4;2	53	y	0.13	6.5	45	8;5	45	y	0.07	11.5	150	12;11	150	y	0.06	3.0	49	1;5	49	n	0.08	9.5	108	8;11	108	y	0.07	6.0	79	4;8	79	y	0.07	5.0	68	7;3	68	y	0.07	6.0	77	4;8	77	y	0.06	3.0	44	5;1	44	n	0.06	5.0	85	0;10	85	n	0.05	2.5	51	5;0	51	n	0.07	4.5	64	5;4	64	y	ENSMUSG00000024150.13	Mcfd2	chr17	protein_coding	multiple coagulation factor deficiency 2
known_NIR_8791	chr17	87585010	87589602	-	87585010;87588190	87587987;87589602	ES	ENSMUST00000146560.9	known	0.00	0	1.0	0	0;2	n	0.00	0	3.0	0	2;4	n	0.46	3	3.5	3	5;2	y	0.00	0	3.5	0	3;4	n	0.18	1	4.5	1	5;4	n	-	-	-	-	-	-	0.27	2	5.5	2	3;8	y	0.22	1	3.5	1	3;4	n	0.00	0	1.5	0	0;3	n	0.00	0	5.0	0	5;5	n	0.36	2	3.5	2	4;3	n	0.18	1	4.5	1	3;6	n	ENSMUSG00000085287.9	4833418N02Rik	chr17	lncRNA	RIKEN cDNA 4833418N02 gene
known_NIR_8792	chr17	87600407;87601494	87601437;87614357	+	87600407	87614357	cassetteExon	ENSMUST00000041110.12	known	0.00	0.0	43	0;0	43	n	0.05	2.0	38	1;3	38	n	0.12	7.5	54	3;12	54	y	0.08	5.0	58	0;10	58	n	0.12	13.0	91	2;24	91	y	0.18	6.5	29	3;10	29	y	0.07	5.0	66	1;9	66	n	0.06	3.5	55	0;7	55	n	0.02	1.0	53	0;2	53	n	0.02	2.0	94	0;4	94	n	0.06	3.0	49	0;6	49	n	0.01	0.5	56	0;1	56	n	ENSMUSG00000036918.17	Ttc7	chr17	protein_coding	tetratricopeptide repeat domain 7
known_NIR_8793	chr17	87743362	87754221	-	87743362;87750154	87750124;87754221	ES	ENSMUST00000040440.7	known	0.01	2	299.5	2	311;288	y	0.01	2	305.0	2	319;291	y	0.01	4	540.5	4	587;494	y	0.01	3	316.5	3	340;293	y	0.00	0	553.0	0	587;519	n	0.00	0	352.0	0	365;339	n	0.01	3	509.0	3	545;473	y	0.00	0	383.5	0	404;363	n	0.00	0	289.5	0	317;262	n	0.01	3	420.5	3	450;391	y	0.00	0	277.0	0	288;266	n	0.00	0	399.0	0	428;370	n	ENSMUSG00000036438.15	Calm2	chr17	protein_coding	calmodulin 2
known_NIR_8794	chr17	88321978	88322827	-	88321975	88322827	A3SS	ENSMUST00000130379.9	known	0.74	14	5	14	5	y	0.80	4	1	4	1	n	0.68	15	7	15	7	y	0.65	11	6	11	6	y	0.53	25	22	25	22	y	0.62	8	5	8	5	y	0.38	6	10	6	10	y	0.72	13	5	13	5	y	0.54	7	6	7	6	y	0.55	12	10	12	10	y	0.69	9	4	9	4	y	0.73	8	3	8	3	y	ENSMUSG00000005371.16	Fbxo11	chr17	protein_coding	F-box protein 11
known_NIR_8795	chr17	88323140	88372063	-	88323140	88372437	A5SS	ENSMUST00000130379.9	known	0.22	2	7	2	7	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.12	2	14	2	14	y	0.25	4	12	4	12	y	0.00	0	6	0	6	n	0.12	1	7	1	7	n	0.27	3	8	3	8	y	0.00	0	9	0	9	n	0.12	1	7	1	7	n	0.00	0	6	0	6	n	0.15	3	17	3	17	y	ENSMUSG00000005371.16	Fbxo11	chr17	protein_coding	F-box protein 11
known_NIR_8796	chr17	95048183	95055045	-	95048183;95051422	95051360;95055045	ES	ENSMUST00000234990.2	known	0.17	2	10.0	2	13;7	y	0.18	1	4.5	1	4;5	n	0.09	2	21.0	2	17;25	y	0.32	3	6.5	3	6;7	y	0.17	2	9.5	2	10;9	y	0.44	2	2.5	2	3;2	n	0.00	0	10.0	0	11;9	n	0.24	2	6.5	2	7;6	y	0.00	0	12.0	0	10;14	n	0.14	2	12.0	2	9;15	y	0.18	1	4.5	1	4;5	n	0.38	4	6.5	4	8;5	y	ENSMUSG00000055660.10	Mettl4	chr17	protein_coding	methyltransferase like 4
known_NIR_8797	chr17	95055845	95056814	-	95055845	95057165	A5SS	ENSMUST00000234990.2	known	1.00	5	0	5	0	n	1.00	3	0	3	0	n	1.00	11	0	11	0	n	1.00	11	0	11	0	n	1.00	16	0	16	0	n	0.78	7	2	7	2	n	0.58	7	5	7	5	y	1.00	8	0	8	0	n	1.00	6	0	6	0	n	1.00	4	0	4	0	n	1.00	1	0	1	0	n	1.00	10	0	10	0	n	ENSMUSG00000055660.10	Mettl4	chr17	protein_coding	methyltransferase like 4
known_NIR_8798	chr17	95055845	95056865	-	95055845	95056814	A5SS	ENSMUST00000171284.3	known	0.38	3	5	3	5	n	0.50	3	3	3	3	n	0.45	9	11	9	11	y	0.00	0	11	0	11	n	0.20	4	16	4	16	y	0.22	2	7	2	7	n	0.50	7	7	7	7	y	0.20	2	8	2	8	y	0.50	6	6	6	6	y	0.56	5	4	5	4	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	ENSMUSG00000055660.10	Mettl4	chr17	protein_coding	methyltransferase like 4
known_NIR_8799	chr17	95055845	95056865	-	95055845	95057165	A5SS	ENSMUST00000234990.2	known	1.00	3	0	3	0	n	1.00	3	0	3	0	n	1.00	9	0	9	0	n	-	-	-	-	-	-	1.00	4	0	4	0	n	0.50	2	2	2	2	n	0.58	7	5	7	5	y	1.00	2	0	2	0	n	1.00	6	0	6	0	n	1.00	5	0	5	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000055660.10	Mettl4	chr17	protein_coding	methyltransferase like 4
known_NIR_8800	chr18	10016644	10022818	-	10016644;10018095	10017991;10022818	ES	ENSMUST00000092096.14	known	0.00	0	50.0	0	66;34	n	0.00	0	31.5	0	28;35	n	0.02	1	60.0	1	60;60	n	0.00	0	71.0	0	72;70	n	0.00	0	65.0	0	67;63	n	0.00	0	23.0	0	16;30	n	0.00	0	62.5	0	63;62	n	0.00	0	27.5	0	20;35	n	0.00	0	47.5	0	51;44	n	0.02	2	105.5	2	121;90	y	0.00	0	50.0	0	51;49	n	0.00	0	91.5	0	95;88	n	ENSMUSG00000047879.18	Usp14	chr18	protein_coding	ubiquitin specific peptidase 14
known_NIR_8801	chr18	10116859	10119885	-	10116862	10119885	A3SS	ENSMUST00000067947.7	known	0.31	5	11	5	11	y	0.30	3	7	3	7	y	0.14	4	25	4	25	y	0.35	8	15	8	15	y	0.17	5	24	5	24	y	0.12	2	15	2	15	y	0.30	8	19	8	19	y	0.10	2	18	2	18	y	0.27	4	11	4	11	y	0.19	4	17	4	17	y	0.25	4	12	4	12	y	0.22	8	29	8	29	y	ENSMUSG00000024290.10	Rock1	chr18	protein_coding	Rho-associated coiled-coil containing protein kinase 1
known_NIR_8802	chr18	10577090;10577759	10577638;10582055	-	10577090	10582055	cassetteExon	ENSMUST00000025142.13	known	0.17	2.5	12	2;3	12	y	0.12	2.0	14	3;1	14	n	0.07	2.0	27	2;2	27	y	0.17	2.5	12	0;5	12	n	0.16	3.5	19	1;6	19	n	0.06	1.0	17	1;1	17	n	0.11	3.0	25	6;0	25	n	0.04	0.5	13	0;1	13	n	0.17	1.0	5	1;1	5	n	0.09	3.5	36	1;6	36	n	0.00	0.0	22	0;0	22	n	0.18	3.0	14	3;3	14	y	ENSMUSG00000024293.17	Esco1	chr18	protein_coding	establishment of sister chromatid cohesion N-acetyltransferase 1
known_NIR_8803	chr18	10586041	10595676	-	10586041	10588439	A5SS&ES	ENSMUST00000025142.13	known	0.00	0	20	0	20	n	0.00	0	16	0	16	n	0.00	0	25	0	25	n	0.09	2	21	2	21	y	0.00	0	28	0	28	n	0.00	0	11	0	11	n	0.00	0	33	0	33	n	0.06	1	17	1	17	n	0.00	0	16	0	16	n	0.00	0	25	0	25	n	0.00	0	15	0	15	n	0.00	0	20	0	20	n	ENSMUSG00000024293.17	Esco1	chr18	protein_coding	establishment of sister chromatid cohesion N-acetyltransferase 1
known_NIR_8804	chr18	10588550	10593746	-	10588550	10596339	A5SS	ENSMUST00000097670.10	known	0.94	16	1	16	1	n	0.85	11	2	11	2	y	1.00	17	0	17	0	n	1.00	31	0	31	0	n	0.91	21	2	21	2	y	1.00	10	0	10	0	n	1.00	23	0	23	0	n	1.00	10	0	10	0	n	0.94	15	1	15	1	n	0.96	25	1	25	1	n	1.00	7	0	7	0	n	1.00	14	0	14	0	n	ENSMUSG00000024293.17	Esco1	chr18	protein_coding	establishment of sister chromatid cohesion N-acetyltransferase 1
known_NIR_8805	chr18	10588550	10593746	-	10588550	10610026	A5SS	ENSMUST00000234090.2	known	1.00	16	0	16	0	n	1.00	11	0	11	0	n	1.00	17	0	17	0	n	1.00	31	0	31	0	n	1.00	21	0	21	0	n	1.00	10	0	10	0	n	0.92	23	2	23	2	y	1.00	10	0	10	0	n	1.00	15	0	15	0	n	1.00	25	0	25	0	n	1.00	7	0	7	0	n	1.00	14	0	14	0	n	ENSMUSG00000024293.17	Esco1	chr18	protein_coding	establishment of sister chromatid cohesion N-acetyltransferase 1
known_NIR_8806	chr18	10588550	10595676	-	10588550	10593746	A5SS	ENSMUST00000025142.13	known	0.00	0	16	0	16	n	0.27	4	11	4	11	y	0.00	0	17	0	17	n	0.00	0	31	0	31	n	0.00	0	21	0	21	n	0.00	0	10	0	10	n	0.00	0	23	0	23	n	0.23	3	10	3	10	y	0.00	0	15	0	15	n	0.00	0	25	0	25	n	0.22	2	7	2	7	n	0.07	1	14	1	14	n	ENSMUSG00000024293.17	Esco1	chr18	protein_coding	establishment of sister chromatid cohesion N-acetyltransferase 1
known_NIR_8807	chr18	10588550	10596339	-	10588550;10595875	10593746;10596339	ES	ENSMUST00000025142.13	known	0.08	1	12.0	1	16;8	n	0.22	2	7.0	2	11;3	y	0.00	0	19.5	0	17;22	n	0.00	0	23.0	0	31;15	n	0.09	2	20.5	2	21;20	y	0.00	0	9.5	0	10;9	n	0.00	0	19.0	0	23;15	n	0.00	0	9.5	0	10;9	n	0.07	1	14.0	1	15;13	n	0.05	1	18.0	1	25;11	n	0.00	0	5.5	0	7;4	n	0.00	0	15.0	0	14;16	n	ENSMUSG00000024293.17	Esco1	chr18	protein_coding	establishment of sister chromatid cohesion N-acetyltransferase 1
known_NIR_8808	chr18	10623707	10626826	+	10623707	10639534	A3SS	ENSMUST00000235020.2	known	1.00	106	0	106	0	n	1.00	91	0	91	0	n	1.00	98	0	98	0	n	1.00	71	0	71	0	n	1.00	97	0	97	0	n	1.00	42	0	42	0	n	0.98	113	2	113	2	y	1.00	42	0	42	0	n	0.99	102	1	102	1	n	1.00	95	0	95	0	n	1.00	116	0	116	0	n	0.99	95	1	95	1	n	ENSMUSG00000002477.6	Snrpd1	chr18	protein_coding	small nuclear ribonucleoprotein D1
known_NIR_8809	chr18	10623707	10626949	+	10623707	10626826	A3SS	ENSMUST00000002551.5	known	0.01	1	106	1	106	n	0.06	6	91	6	91	y	0.00	0	98	0	98	n	0.12	10	71	10	71	y	0.10	11	97	11	97	y	0.07	3	42	3	42	y	0.01	1	113	1	113	n	0.05	2	42	2	42	y	0.05	5	102	5	102	y	0.03	3	95	3	95	y	0.02	2	116	2	116	y	0.03	3	95	3	95	y	ENSMUSG00000002477.6	Snrpd1	chr18	protein_coding	small nuclear ribonucleoprotein D1
known_NIR_8810	chr18	10645181	10647726	-	10645223	10647726	A3SS	ENSMUST00000117726.9	known	0.75	12	4	12	4	y	0.73	11	4	11	4	y	1.00	3	0	3	0	n	0.45	5	6	5	6	y	0.54	13	11	13	11	y	0.77	10	3	10	3	y	0.38	6	10	6	10	y	1.00	3	0	3	0	n	1.00	8	0	8	0	n	0.50	8	8	8	8	y	0.64	7	4	7	4	y	0.44	4	5	4	5	n	ENSMUSG00000002475.17	Abhd3	chr18	protein_coding	abhydrolase domain containing 3
known_NIR_8811	chr18	10645181	10647726	-	10645235	10647726	A3SS	ENSMUST00000117828.9	known	0.06	12	202	12	202	y	0.05	11	220	11	220	y	0.03	3	94	3	94	y	0.02	5	258	5	258	y	0.05	13	273	13	273	y	0.11	10	85	10	85	y	0.03	6	225	6	225	y	0.03	3	107	3	107	y	0.03	8	238	8	238	y	0.02	8	370	8	370	y	0.03	7	267	7	267	y	0.01	4	266	4	266	y	ENSMUSG00000002475.17	Abhd3	chr18	protein_coding	abhydrolase domain containing 3
known_NIR_8812	chr18	10645223	10647726	-	10645235	10647726	A3SS	ENSMUST00000117828.9	known	0.02	4	202	4	202	y	0.02	4	220	4	220	y	0.00	0	94	0	94	n	0.02	6	258	6	258	y	0.04	11	273	11	273	y	0.03	3	85	3	85	y	0.04	10	225	10	225	y	0.00	0	107	0	107	n	0.00	0	238	0	238	n	0.02	8	370	8	370	y	0.01	4	267	4	267	y	0.02	5	266	5	266	y	ENSMUSG00000002475.17	Abhd3	chr18	protein_coding	abhydrolase domain containing 3
known_NIR_8813	chr18	10658892	10662978	-	10658892	10682069	A5SS	ENSMUST00000002549.9	known	0.00	0	114	0	114	n	0.00	0	117	0	117	n	0.01	1	67	1	67	n	0.00	0	207	0	207	n	0.00	0	181	0	181	n	0.00	0	56	0	56	n	0.01	2	160	2	160	y	0.00	0	101	0	101	n	0.00	0	153	0	153	n	0.00	0	233	0	233	n	0.00	0	115	0	115	n	0.00	0	159	0	159	n	ENSMUSG00000002475.17	Abhd3	chr18	protein_coding	abhydrolase domain containing 3
known_NIR_8814	chr18	10812156	10815736	+	10812156	10817819	A3SS	ENSMUST00000124288.8	known	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	25	0	25	n	0.06	1	16	1	16	n	0.08	1	12	1	12	n	0.17	1	5	1	5	n	0.00	0	8	0	8	n	0.25	3	9	3	9	y	0.08	1	11	1	11	n	0.27	3	8	3	8	y	0.00	0	7	0	7	n	0.18	2	9	2	9	y	ENSMUSG00000024294.15	Mib1	chr18	protein_coding	mindbomb E3 ubiquitin protein ligase 1
known_NIR_8815	chr18	11050256	11050624	-	11047678	11050624	A3SS	ENSMUST00000231895.2	known	0.62	10	6	10	6	y	0.75	6	2	6	2	n	0.17	1	5	1	5	n	0.25	3	9	3	9	y	0.40	8	12	8	12	y	0.00	0	7	0	7	n	0.29	7	17	7	17	y	0.00	0	8	0	8	n	0.21	3	11	3	11	y	0.53	10	9	10	9	y	0.25	4	12	4	12	y	0.32	8	17	8	17	y	ENSMUSG00000097222.3	Gata6os	chr18	lncRNA	GATA binding protein 6, opposite strand
known_NIR_8816	chr18	11851987	11853567	+	11851987	11853602	A3SS	ENSMUST00000115861.9	known	-	-	-	-	-	-	-	-	-	-	-	-	0.09	2	21	2	21	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	ENSMUSG00000041238.17	Rbbp8	chr18	protein_coding	retinoblastoma binding protein 8, endonuclease
known_NIR_8817	chr18	12116650	12126621	-	12097715	12126621	A3SS	ENSMUST00000209628.2	known	1.00	7	0	7	0	n	1.00	6	0	6	0	n	0.73	8	3	8	3	y	1.00	16	0	16	0	n	1.00	8	0	8	0	n	1.00	6	0	6	0	n	1.00	11	0	11	0	n	1.00	6	0	6	0	n	1.00	6	0	6	0	n	1.00	13	0	13	0	n	1.00	5	0	5	0	n	1.00	11	0	11	0	n	ENSMUSG00000049411.16	Tmem241	chr18	protein_coding	transmembrane protein 241
known_NIR_8818	chr18	12116699	12126621	-	12116650	12126621	A3SS	ENSMUST00000050228.15	known	0.12	1	7	1	7	n	0.00	0	6	0	6	n	0.11	1	8	1	8	n	0.24	5	16	5	16	y	0.11	1	8	1	8	n	0.25	2	6	2	6	n	0.08	1	11	1	11	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.19	3	13	3	13	y	0.29	2	5	2	5	n	0.08	1	11	1	11	n	ENSMUSG00000049411.16	Tmem241	chr18	protein_coding	transmembrane protein 241
known_NIR_8819	chr18	12197296	12200117	-	12199764	12200117	3pMXE	ENSMUST00000092075.5	known	1.00	6	0	6	0	n	1.00	7	0	7	0	n	1.00	11	0	11	0	n	0.73	8	3	8	3	y	0.86	12	2	12	2	y	0.89	8	1	8	1	n	0.75	6	2	6	2	n	0.91	10	1	10	1	n	1.00	5	0	5	0	n	0.57	4	3	4	3	n	1.00	4	0	4	0	n	0.50	3	3	3	3	n	ENSMUSG00000049411.16	Tmem241	chr18	protein_coding	transmembrane protein 241
known_NIR_8820	chr18	12197296;12199764	12199673;12200117	-	12197296	12200117	cassetteExon	ENSMUST00000209628.2	known	0.00	0.0	6	0;0	6	n	0.00	0.0	7	0;0	7	n	0.04	0.5	11	1;0	11	n	0.20	2.0	8	1;3	8	n	0.11	1.5	12	1;2	12	n	0.06	0.5	8	0;1	8	n	0.20	1.5	6	1;2	6	n	0.05	0.5	10	0;1	10	n	0.00	0.0	5	0;0	5	n	0.56	5.0	4	7;3	4	y	0.00	0.0	4	0;0	4	n	0.40	2.0	3	1;3	3	n	ENSMUSG00000049411.16	Tmem241	chr18	protein_coding	transmembrane protein 241
known_NIR_8821	chr18	12237237;12239060	12238911;12246452	-	12237237	12246452	cassetteExon	ENSMUST00000055447.14	known	0.05	0.5	9	1;0	9	n	0.43	1.5	2	1;2	2	n	0.24	4.0	13	7;1	13	n	0.16	1.5	8	3;0	8	n	0.47	8.0	9	5;11	9	y	0.53	4.5	4	5;4	4	y	0.24	3.5	11	3;4	11	y	0.30	5.5	13	2;9	13	y	0.40	2.0	3	1;3	3	n	0.20	3.5	14	4;3	14	y	0.12	1.0	7	0;2	7	n	0.11	1.0	8	1;1	8	n	ENSMUSG00000049411.16	Tmem241	chr18	protein_coding	transmembrane protein 241
known_NIR_8822	chr18	12246529	12254438	-	12246529;12251507	12251461;12254438	ES	ENSMUST00000050228.15	known	0.00	0	5.5	0	8;3	n	0.00	0	7.5	0	4;11	n	0.00	0	12.0	0	14;10	n	0.00	0	6.0	0	5;7	n	0.00	0	9.0	0	9;9	n	0.00	0	10.5	0	10;11	n	0.00	0	13.0	0	11;15	n	0.00	0	12.5	0	9;16	n	0.00	0	10.0	0	8;12	n	0.00	0	10.0	0	9;11	n	0.00	0	13.0	0	13;13	n	0.38	3	5.0	3	3;7	y	ENSMUSG00000049411.16	Tmem241	chr18	protein_coding	transmembrane protein 241
known_NIR_8823	chr18	12270406	12270902	+	12270406	12272374	A3SS	ENSMUST00000025270.8	known	0.08	8	92	8	92	y	0.07	6	79	6	79	y	0.07	16	198	16	198	y	0.07	9	113	9	113	y	0.04	6	165	6	165	y	0.08	8	97	8	97	y	0.10	13	118	13	118	y	0.05	5	95	5	95	y	0.05	5	87	5	87	y	0.08	12	139	12	139	y	0.06	5	75	5	75	y	0.03	4	141	4	141	y	ENSMUSG00000024404.8	Riok3	chr18	protein_coding	RIO kinase 3
known_NIR_8824	chr18	12272517	12275993	+	12272517	12285856	A3SS	ENSMUST00000234985.2	known	1.00	106	0	106	0	n	1.00	103	0	103	0	n	0.99	244	2	244	2	y	0.99	152	1	152	1	n	1.00	181	0	181	0	n	1.00	103	0	103	0	n	1.00	149	0	149	0	n	1.00	110	0	110	0	n	1.00	93	0	93	0	n	1.00	177	0	177	0	n	1.00	107	0	107	0	n	0.99	154	1	154	1	n	ENSMUSG00000024404.8	Riok3	chr18	protein_coding	RIO kinase 3
known_NIR_8825	chr18	12272517	12281848	+	12272517;12276120	12275993;12281848	ES	ENSMUST00000025270.8	known	0.02	2	123.0	2	106;140	y	0.02	2	99.0	2	103;95	y	0.01	3	273.0	3	244;302	y	0.00	0	156.5	0	152;161	n	0.01	2	190.0	2	181;199	y	0.02	2	113.0	2	103;123	y	0.01	2	169.5	2	149;190	y	0.00	0	116.0	0	110;122	n	0.01	1	112.0	1	93;131	n	0.00	0	181.5	0	177;186	n	0.00	0	109.5	0	107;112	n	0.03	5	158.0	5	154;162	y	ENSMUSG00000024404.8	Riok3	chr18	protein_coding	RIO kinase 3
known_NIR_8826	chr18	12272517	12281848	+	12272517;12276251	12275993;12281848	ES	ENSMUST00000234148.2	known	0.03	2	56.5	2	106;7	y	0.04	2	52.0	2	103;1	n	0.02	3	123.0	3	244;2	y	0.00	0	76.5	0	152;1	n	0.02	2	90.5	2	181;0	n	0.04	2	52.0	2	103;1	n	0.03	2	75.5	2	149;2	y	0.00	0	58.0	0	110;6	n	0.02	1	46.5	1	93;0	n	0.00	0	91.5	0	177;6	n	0.00	0	54.0	0	107;1	n	0.06	5	78.5	5	154;3	y	ENSMUSG00000024404.8	Riok3	chr18	protein_coding	RIO kinase 3
known_NIR_8827	chr18	12276251	12281848	+	12276120	12281848	A5SS	ENSMUST00000025270.8	known	0.05	7	140	7	140	y	0.01	1	95	1	95	n	0.01	2	302	2	302	y	0.01	1	161	1	161	n	0.00	0	199	0	199	n	0.01	1	123	1	123	n	0.01	2	190	2	190	y	0.05	6	122	6	122	y	0.00	0	131	0	131	n	0.03	6	186	6	186	y	0.01	1	112	1	112	n	0.02	3	162	3	162	y	ENSMUSG00000024404.8	Riok3	chr18	protein_coding	RIO kinase 3
known_NIR_8828	chr18	12281902	12282576	+	12282045	12282576	A5SS	ENSMUST00000025270.8	known	0.04	8	179	8	179	y	0.02	4	162	4	162	y	0.02	7	324	7	324	y	0.02	3	193	3	193	y	0.02	4	255	4	255	y	0.02	3	196	3	196	y	0.02	6	256	6	256	y	0.01	1	149	1	149	n	0.01	2	175	2	175	y	0.01	3	210	3	210	y	0.02	3	189	3	189	y	0.00	0	237	0	237	n	ENSMUSG00000024404.8	Riok3	chr18	protein_coding	RIO kinase 3
known_NIR_8829	chr18	12282735	12285856	+	12272517	12285856	A5SS	ENSMUST00000234985.2	known	1.00	167	0	167	0	n	1.00	164	0	164	0	n	0.99	319	2	319	2	y	0.99	188	1	188	1	n	1.00	239	0	239	0	n	1.00	152	0	152	0	n	1.00	208	0	208	0	n	1.00	148	0	148	0	n	1.00	145	0	145	0	n	1.00	189	0	189	0	n	1.00	152	0	152	0	n	1.00	225	1	225	1	n	ENSMUSG00000024404.8	Riok3	chr18	protein_coding	RIO kinase 3
known_NIR_8830	chr18	12301959	12304606	+	12301959;12302366	12302290;12304606	ES	ENSMUST00000126523.9	known	0.04	1	26.0	1	27;25	n	0.17	2	10.0	2	11;9	y	0.12	3	22.0	3	18;26	y	0.07	3	37.0	3	46;28	y	0.03	1	37.0	1	41;33	n	0.06	1	16.5	1	14;19	n	0.00	0	35.0	0	31;39	n	0.10	3	28.5	3	28;29	y	0.07	2	25.5	2	28;23	y	0.02	1	43.0	1	39;47	n	0.06	1	17.0	1	20;14	n	0.05	2	35.0	2	33;37	y	ENSMUSG00000024410.16	Rmc1	chr18	protein_coding	regulator of MON1-CCZ1
known_NIR_8831	chr18	12317319	12317969	+	12317319	12317949	A3SS	ENSMUST00000025276.15	known	0.01	1	67	1	67	n	0.02	1	45	1	45	n	0.02	1	44	1	44	n	0.02	1	48	1	48	n	0.00	0	46	0	46	n	0.00	0	15	0	15	n	0.04	2	50	2	50	y	0.08	3	34	3	34	y	0.02	1	48	1	48	n	0.00	0	59	0	59	n	0.09	4	40	4	40	y	0.11	6	48	6	48	y	ENSMUSG00000024410.16	Rmc1	chr18	protein_coding	regulator of MON1-CCZ1
known_NIR_8832	chr18	12322138	12322271	+	12322138	12322217	A3SS	ENSMUST00000025276.15	known	0.00	0	59	0	59	n	0.00	0	48	0	48	n	0.00	0	24	0	24	n	0.00	0	40	0	40	n	0.00	0	60	0	60	n	0.00	0	17	0	17	n	0.02	1	62	1	62	n	0.00	0	30	0	30	n	0.00	0	33	0	33	n	0.04	2	47	2	47	y	0.00	0	46	0	46	n	0.00	0	46	0	46	n	ENSMUSG00000024410.16	Rmc1	chr18	protein_coding	regulator of MON1-CCZ1
known_NIR_8833	chr18	12322442	12322541	+	12322442	12322863	A3SS	ENSMUST00000025276.15	known	0.00	0	39	0	39	n	0.00	0	86	0	86	n	0.00	0	34	0	34	n	0.00	0	51	0	51	n	0.00	0	66	0	66	n	0.00	0	17	0	17	n	0.00	0	69	0	69	n	0.00	0	25	0	25	n	0.00	0	50	0	50	n	0.02	1	58	1	58	n	0.04	2	47	2	47	y	0.00	0	59	0	59	n	ENSMUSG00000024410.16	Rmc1	chr18	protein_coding	regulator of MON1-CCZ1
known_NIR_8834	chr18	12322442	12323397	+	12322442	12322863	3pMXE	ENSMUST00000025276.15	known	0.00	0	39	0	39	n	0.05	5	86	5	86	y	0.00	0	34	0	34	n	0.00	0	51	0	51	n	0.07	5	66	5	66	y	0.00	0	17	0	17	n	0.00	0	69	0	69	n	0.00	0	25	0	25	n	0.00	0	50	0	50	n	0.00	0	58	0	58	n	0.00	0	47	0	47	n	0.06	4	59	4	59	y	ENSMUSG00000024410.16	Rmc1	chr18	protein_coding	regulator of MON1-CCZ1
known_NIR_8835	chr18	12776530	12817894	+	12777100	12817894	A5SS	ENSMUST00000141060.2	known	0.00	0	349	0	349	n	0.00	0	219	0	219	n	0.00	0	77	0	77	n	0.01	6	576	6	576	y	0.00	1	492	1	492	n	0.00	0	72	0	72	n	0.01	3	325	3	325	y	0.00	0	116	0	116	n	0.00	0	350	0	350	n	0.00	2	539	2	539	y	0.00	1	378	1	378	n	0.00	0	532	0	532	n	ENSMUSG00000024424.16	Ttc39c	chr18	protein_coding	tetratricopeptide repeat domain 39C
known_NIR_8836	chr18	12828647	12830948	+	12828619	12830948	A5SS	ENSMUST00000234974.2	known	0.70	349	147	349	147	y	0.71	216	89	216	89	y	0.73	57	21	57	21	y	0.72	464	180	464	180	y	0.78	454	129	454	129	y	0.71	56	23	56	23	y	0.78	366	104	366	104	y	0.73	77	29	77	29	y	0.72	398	152	398	152	y	0.78	560	154	560	154	y	0.75	428	139	428	139	y	0.71	460	184	460	184	y	ENSMUSG00000024424.16	Ttc39c	chr18	protein_coding	tetratricopeptide repeat domain 39C
known_NIR_8837	chr18	12831116	12831392	+	12831116	12853007	A3SS	ENSMUST00000234974.2	known	0.00	2	518	2	518	y	0.00	1	321	1	321	n	0.00	0	90	0	90	n	0.00	0	609	0	609	n	0.00	1	595	1	595	n	0.01	1	67	1	67	n	0.01	5	493	5	493	y	0.00	0	94	0	94	n	0.01	3	484	3	484	y	0.00	0	751	0	751	n	0.02	9	545	9	545	y	0.01	5	649	5	649	y	ENSMUSG00000024424.16	Ttc39c	chr18	protein_coding	tetratricopeptide repeat domain 39C
known_NIR_8838	chr18	12868048	12869037	+	12868048	12869015	A3SS	ENSMUST00000234255.2	known	1.00	827	1	827	1	n	1.00	566	1	566	1	n	0.98	147	3	147	3	y	1.00	794	3	794	3	y	0.99	798	9	798	9	y	0.99	112	1	112	1	n	0.99	708	7	708	7	y	0.99	115	1	115	1	n	1.00	678	3	678	3	y	0.99	910	6	910	6	y	0.99	805	6	805	6	y	0.99	848	9	848	9	y	ENSMUSG00000024424.16	Ttc39c	chr18	protein_coding	tetratricopeptide repeat domain 39C
known_NIR_8839	chr18	12921452	12974241	-	12921452	12952562	5pMXE	ENSMUST00000234428.2	known	0.02	3	180	3	180	y	0.00	0	120	0	120	n	0.02	2	117	2	117	y	0.00	0	221	0	221	n	0.02	5	258	5	258	y	0.01	1	74	1	74	n	0.01	3	230	3	230	y	0.02	2	116	2	116	y	0.00	0	156	0	156	n	0.00	1	229	1	229	n	0.02	4	188	4	188	y	0.02	5	223	5	223	y	ENSMUSG00000044252.19	Osbpl1a	chr18	protein_coding	oxysterol binding protein-like 1A
known_NIR_8840	chr18	12921452	12974241	-	12921452;12952718	12952562;12974241	ES	ENSMUST00000121808.8	known	0.02	3	138.5	3	180;97	y	0.00	0	106.0	0	120;92	n	0.02	2	92.5	2	117;68	y	0.00	0	163.0	0	221;105	n	0.02	5	214.0	5	258;170	y	0.02	1	60.0	1	74;46	n	0.02	3	171.0	3	230;112	y	0.02	2	99.5	2	116;83	y	0.00	0	120.0	0	156;84	n	0.01	1	181.5	1	229;134	n	0.03	4	146.0	4	188;104	y	0.03	5	173.5	5	223;124	y	ENSMUSG00000044252.19	Osbpl1a	chr18	protein_coding	oxysterol binding protein-like 1A
known_NIR_8841	chr18	12921452	12995164	-	12921452	12952562	A5SS&ES	ENSMUST00000074352.11	known	0.02	3	180	3	180	y	0.01	1	120	1	120	n	0.02	2	117	2	117	y	0.00	0	221	0	221	n	0.00	1	258	1	258	n	0.03	2	74	2	74	y	0.01	2	230	2	230	y	0.00	0	116	0	116	n	0.00	0	156	0	156	n	0.00	0	229	0	229	n	0.02	4	188	4	188	y	0.00	1	223	1	223	n	ENSMUSG00000044252.19	Osbpl1a	chr18	protein_coding	oxysterol binding protein-like 1A
known_NIR_8842	chr18	12921452	12995164	-	12921452;12952718	12952562;12995164	ES	ENSMUST00000118313.8	known	0.02	3	126.0	3	180;72	y	0.01	1	76.5	1	120;33	n	0.02	2	90.5	2	117;64	y	0.00	0	145.0	0	221;69	n	0.01	1	168.0	1	258;78	n	0.04	2	48.5	2	74;23	y	0.01	2	149.5	2	230;69	y	0.00	0	82.0	0	116;48	n	0.00	0	101.0	0	156;46	n	0.00	0	154.5	0	229;80	n	0.03	4	115.0	4	188;42	y	0.01	1	152.5	1	223;82	n	ENSMUSG00000044252.19	Osbpl1a	chr18	protein_coding	oxysterol binding protein-like 1A
known_NIR_8843	chr18	12921452;12974403	12974241;12995164	-	12921452	12995164	cassetteExon	ENSMUST00000121774.8	known	0.92	34.0	3	3;65	3	y	0.97	34.0	1	0;68	1	n	0.94	30.0	2	2;58	2	y	1.00	53.0	0	0;106	0	n	0.99	77.0	1	5;149	1	n	0.94	34.0	2	1;67	2	n	0.97	55.5	2	3;108	2	y	1.00	38.0	0	2;74	0	n	1.00	49.0	0	0;98	0	n	1.00	70.5	0	1;140	0	n	0.90	38.0	4	4;72	4	y	0.98	65.5	1	5;126	1	n	ENSMUSG00000044252.19	Osbpl1a	chr18	protein_coding	oxysterol binding protein-like 1A
known_NIR_8844	chr18	12921452;12974403	12974241;12995164	-	12921452;12952718	12952562;12995164	MXE	ENSMUST00000118313.8	known	0.21	34.0	126.0	3;65	180;72	y	0.31	34.0	76.5	0;68	120;33	n	0.25	30.0	90.5	2;58	117;64	y	0.27	53.0	145.0	0;106	221;69	n	0.31	77.0	168.0	5;149	258;78	y	0.41	34.0	48.5	1;67	74;23	n	0.27	55.5	149.5	3;108	230;69	y	0.32	38.0	82.0	2;74	116;48	y	0.33	49.0	101.0	0;98	156;46	n	0.31	70.5	154.5	1;140	229;80	n	0.25	38.0	115.0	4;72	188;42	y	0.30	65.5	152.5	5;126	223;82	y	ENSMUSG00000044252.19	Osbpl1a	chr18	protein_coding	oxysterol binding protein-like 1A
known_NIR_8845	chr18	12952718	12995164	-	12952718	12974241	A5SS&ES	ENSMUST00000074352.11	known	0.43	72	97	72	97	y	0.26	33	92	33	92	y	0.48	64	68	64	68	y	0.40	69	105	69	105	y	0.31	78	170	78	170	y	0.33	23	46	23	46	y	0.38	69	112	69	112	y	0.37	48	83	48	83	y	0.35	46	84	46	84	y	0.37	80	134	80	134	y	0.29	42	104	42	104	y	0.40	82	124	82	124	y	ENSMUSG00000044252.19	Osbpl1a	chr18	protein_coding	oxysterol binding protein-like 1A
known_NIR_8846	chr18	12952718	12995164	-	12952718;12974403	12974241;12995164	ES	ENSMUST00000121808.8	known	0.47	72	81.0	72	97;65	y	0.29	33	80.0	33	92;68	y	0.50	64	63.0	64	68;58	y	0.40	69	105.5	69	105;106	y	0.33	78	159.5	78	170;149	y	0.29	23	56.5	23	46;67	y	0.39	69	110.0	69	112;108	y	0.38	48	78.5	48	83;74	y	0.34	46	91.0	46	84;98	y	0.37	80	137.0	80	134;140	y	0.32	42	88.0	42	104;72	y	0.40	82	125.0	82	124;126	y	ENSMUSG00000044252.19	Osbpl1a	chr18	protein_coding	oxysterol binding protein-like 1A
known_NIR_8847	chr18	12974403	12993042	-	12974403	12995164	A5SS	ENSMUST00000121808.8	known	0.04	3	65	3	65	y	0.00	0	68	0	68	n	0.00	0	58	0	58	n	0.03	3	106	3	106	y	0.04	6	149	6	149	y	0.00	0	67	0	67	n	0.04	5	108	5	108	y	0.01	1	74	1	74	n	0.04	4	98	4	98	y	0.05	7	140	7	140	y	0.14	12	72	12	72	y	0.07	9	126	9	126	y	ENSMUSG00000044252.19	Osbpl1a	chr18	protein_coding	oxysterol binding protein-like 1A
known_NIR_8848	chr18	12974403	12993042	-	12974403	12996129	A5SS	ENSMUST00000234871.2	known	1.00	3	0	3	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	3	0	3	0	n	1.00	6	0	6	0	n	-	-	-	-	-	-	1.00	5	0	5	0	n	1.00	1	0	1	0	n	1.00	4	0	4	0	n	0.70	7	3	7	3	y	0.86	12	2	12	2	y	1.00	9	0	9	0	n	ENSMUSG00000044252.19	Osbpl1a	chr18	protein_coding	oxysterol binding protein-like 1A
known_NIR_8849	chr18	12974403	12993042	-	12974403	13004135	A5SS	ENSMUST00000074352.11	known	0.25	3	9	3	9	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.75	3	1	3	1	n	0.60	6	4	6	4	y	-	-	-	-	-	-	0.42	5	7	5	7	y	0.33	1	2	1	2	n	0.44	4	5	4	5	n	0.54	7	6	7	6	y	0.80	12	3	12	3	y	0.60	9	6	9	6	y	ENSMUSG00000044252.19	Osbpl1a	chr18	protein_coding	oxysterol binding protein-like 1A
known_NIR_8850	chr18	12974403	12996129	-	12974403	12995164	5pMXE	ENSMUST00000121808.8	known	0.00	0	65	0	65	n	0.00	0	68	0	68	n	0.02	1	58	1	58	n	0.00	0	106	0	106	n	0.00	0	149	0	149	n	0.00	0	67	0	67	n	0.00	0	108	0	108	n	0.00	0	74	0	74	n	0.00	0	98	0	98	n	0.02	3	140	3	140	y	0.03	2	72	2	72	y	0.00	0	126	0	126	n	ENSMUSG00000044252.19	Osbpl1a	chr18	protein_coding	oxysterol binding protein-like 1A
known_NIR_8851	chr18	12974403	13002094	-	12974403	12993042	5pMXE	ENSMUST00000124570.3	known	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	n	0.25	2	6	2	6	n	1.00	2	0	2	0	n	0.29	2	5	2	5	n	0.80	4	1	4	1	n	0.33	2	4	2	4	n	0.22	2	7	2	7	n	0.29	5	12	5	12	y	0.25	3	9	3	9	y	ENSMUSG00000044252.19	Osbpl1a	chr18	protein_coding	oxysterol binding protein-like 1A
known_NIR_8852	chr18	12974403	13002094	-	12974403	12995164	5pMXE	ENSMUST00000121808.8	known	0.00	0	65	0	65	n	0.00	0	68	0	68	n	0.00	0	58	0	58	n	0.02	2	106	2	106	y	0.01	2	149	2	149	y	0.03	2	67	2	67	y	0.02	2	108	2	108	y	0.05	4	74	4	74	y	0.02	2	98	2	98	y	0.01	2	140	2	140	y	0.06	5	72	5	72	y	0.02	3	126	3	126	y	ENSMUSG00000044252.19	Osbpl1a	chr18	protein_coding	oxysterol binding protein-like 1A
known_NIR_8853	chr18	12974403	13004135	-	12974403	12995164	5pMXE	ENSMUST00000121808.8	known	0.12	9	65	9	65	y	0.06	4	68	4	68	y	0.06	4	58	4	58	y	0.01	1	106	1	106	n	0.03	4	149	4	149	y	0.00	0	67	0	67	n	0.06	7	108	7	108	y	0.03	2	74	2	74	y	0.05	5	98	5	98	y	0.04	6	140	6	140	y	0.04	3	72	3	72	y	0.05	6	126	6	126	y	ENSMUSG00000044252.19	Osbpl1a	chr18	protein_coding	oxysterol binding protein-like 1A
known_NIR_8854	chr18	14769675	14773314	-	14769675;14770541	14770449;14773314	ES	ENSMUST00000040964.13	known	0.87	40	6.0	40	8;4	y	0.94	39	2.5	39	4;1	n	0.89	58	7.5	58	10;5	y	0.93	41	3.0	41	3;3	y	0.86	41	6.5	41	7;6	y	0.81	24	5.5	24	5;6	y	0.76	27	8.5	27	8;9	y	0.78	23	6.5	23	4;9	y	0.88	43	6.0	43	8;4	y	0.85	37	6.5	37	8;5	y	0.88	38	5.0	38	5;5	y	0.95	42	2.0	42	0;4	n	ENSMUSG00000037013.18	Ss18	chr18	protein_coding	SS18, nBAF chromatin remodeling complex subunit
known_NIR_8855	chr18	14774180	14788084	-	14774180	14784080	5pMXE	ENSMUST00000235011.2	known	0.00	0	35	0	35	n	0.00	0	32	0	32	n	0.04	2	52	2	52	y	0.06	3	50	3	50	y	0.02	1	65	1	65	n	0.02	1	41	1	41	n	0.00	0	60	0	60	n	0.00	0	40	0	40	n	0.00	0	50	0	50	n	0.01	1	68	1	68	n	0.04	2	49	2	49	y	0.00	0	48	0	48	n	ENSMUSG00000037013.18	Ss18	chr18	protein_coding	SS18, nBAF chromatin remodeling complex subunit
known_NIR_8856	chr18	14774180;14784301	14784080;14788084	-	14774180	14788084	cassetteExon	ENSMUST00000040964.13	known	1.00	26.5	0	35;18	0	n	1.00	27.5	0	32;23	0	n	0.96	46.0	2	52;40	2	y	0.94	46.0	3	50;42	3	y	0.98	61.5	1	65;58	1	n	0.97	35.5	1	41;30	1	n	1.00	48.0	0	60;36	0	n	1.00	34.0	0	40;28	0	n	1.00	37.0	0	50;24	0	n	0.98	62.0	1	68;56	1	n	0.95	41.5	2	49;34	2	y	1.00	50.5	0	48;53	0	n	ENSMUSG00000037013.18	Ss18	chr18	protein_coding	SS18, nBAF chromatin remodeling complex subunit
known_NIR_8857	chr18	14839389	14859561	+	14839389;14854350	14854224;14859561	ES	ENSMUST00000040860.3	known	0.50	2	2.0	2	0;4	n	0.00	0	1.5	0	1;2	n	0.27	2	5.5	2	3;8	y	0.00	0	2.0	0	2;2	n	0.00	0	4.5	0	4;5	n	0.25	1	3.0	1	6;0	n	0.44	2	2.5	2	4;1	n	0.50	1	1.0	1	1;1	n	0.00	0	1.5	0	3;0	n	0.67	1	0.5	1	0;1	n	0.86	3	0.5	3	1;0	n	0.00	0	2.0	0	1;3	n	ENSMUSG00000036743.5	Psma8	chr18	protein_coding	proteasome subunit alpha 8
known_NIR_8858	chr18	14839389	14859561	+	14854350	14859561	A5SS&ES	ENSMUST00000234922.2	known	0.33	2	4	2	4	n	0.00	0	2	0	2	n	0.20	2	8	2	8	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	1.00	1	0	1	0	n	0.67	2	1	2	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	3	0	3	0	n	0.00	0	3	0	3	n	ENSMUSG00000036743.5	Psma8	chr18	protein_coding	proteasome subunit alpha 8
known_NIR_8859	chr18	20165460;20165592	20165547;20166119	-	20165460	20166119	cassetteExon	ENSMUST00000075214.9	known	0.16	13.5	71	12;15	71	y	0.12	13.0	95	14;12	95	y	0.22	36.5	126	34;39	126	y	0.10	12.0	109	12;12	109	y	0.17	23.5	114	21;26	114	y	0.23	21.5	72	22;21	72	y	0.24	31.5	100	31;32	100	y	0.22	17.5	62	16;19	62	y	0.25	24.5	72	20;29	72	y	0.19	37.5	164	32;43	164	y	0.15	17.0	100	17;17	100	y	0.22	35.0	126	37;33	126	y	ENSMUSG00000024331.12	Dsc2	chr18	protein_coding	desmocollin 2
known_NIR_8860	chr18	21094857	21107356	+	21077814	21107356	A5SS	ENSMUST00000050004.3	known	0.71	24	10	24	10	y	0.81	17	4	17	4	y	0.92	54	5	54	5	y	0.94	88	6	88	6	y	0.79	63	17	63	17	y	0.81	25	6	25	6	y	0.73	44	16	44	16	y	0.82	31	7	31	7	y	0.72	62	24	62	24	y	0.82	94	20	94	20	y	0.92	58	5	58	5	y	0.84	86	16	86	16	y	ENSMUSG00000033107.7	Rnf125	chr18	protein_coding	ring finger protein 125
known_NIR_8861	chr18	21143849	21153945	+	21143849;21150932	21150876;21153945	ES	ENSMUST00000234107.2	known	0.07	2	28.5	2	27;30	y	0.12	4	28.0	4	24;32	y	0.04	3	64.5	3	58;71	y	0.07	3	39.0	3	37;41	y	0.09	5	49.0	5	50;48	y	0.00	0	26.5	0	21;32	n	0.17	9	43.0	9	36;50	y	0.00	0	42.5	0	35;50	n	0.10	4	35.5	4	30;41	y	0.08	4	44.5	4	46;43	y	0.16	8	43.5	8	44;43	y	0.18	10	46.0	10	43;49	y	ENSMUSG00000024317.16	Rnf138	chr18	protein_coding	ring finger protein 138
known_NIR_8862	chr18	21154056	21159143	+	21154056;21157573	21157466;21159143	ES	ENSMUST00000234107.2	known	0.68	26	12.0	26	14;10	y	0.52	16	14.5	16	16;13	y	0.51	31	30.0	31	30;30	y	0.41	12	17.0	12	20;14	y	0.60	34	22.5	34	22;23	y	0.38	12	19.5	12	16;23	y	0.46	26	30.0	26	31;29	y	0.30	8	19.0	8	18;20	y	0.61	25	16.0	25	15;17	y	0.58	29	21.0	29	22;20	y	0.67	35	17.5	35	16;19	y	0.50	26	25.5	26	28;23	y	ENSMUSG00000024317.16	Rnf138	chr18	protein_coding	ring finger protein 138
known_NIR_8863	chr18	23937278	23965910	+	23905716	23965910	A5SS	ENSMUST00000170802.8	known	0.92	36	3	36	3	y	1.00	25	0	25	0	n	0.92	24	2	24	2	y	0.98	41	1	41	1	n	0.96	44	2	44	2	y	1.00	17	0	17	0	n	1.00	24	0	24	0	n	0.97	37	1	37	1	n	1.00	27	0	27	0	n	1.00	38	0	38	0	n	1.00	35	0	35	0	n	1.00	38	0	38	0	n	ENSMUSG00000024277.15	Mapre2	chr18	protein_coding	microtubule-associated protein, RP/EB family, member 2
known_NIR_8864	chr18	24087918	24089396	+	24088080	24089396	A5SS	ENSMUST00000225682.2	known	0.33	3	6	3	6	n	0.67	4	2	4	2	n	0.29	4	10	4	10	y	0.33	1	2	1	2	n	0.33	3	6	3	6	n	0.50	2	2	2	2	n	0.33	4	8	4	8	y	-	-	-	-	-	-	0.00	0	8	0	8	n	0.50	2	2	2	2	n	0.00	0	6	0	6	n	0.33	4	8	4	8	y	ENSMUSG00000024276.8	Zfp397	chr18	protein_coding	zinc finger protein 397
known_NIR_8865	chr18	24088240	24089396	+	24088080	24089396	A5SS	ENSMUST00000225682.2	known	0.25	2	6	2	6	n	0.60	3	2	3	2	n	0.33	5	10	5	10	y	0.71	5	2	5	2	n	0.14	1	6	1	6	n	0.67	4	2	4	2	n	0.27	3	8	3	8	y	1.00	2	0	2	0	n	0.11	1	8	1	8	n	0.67	4	2	4	2	n	0.25	2	6	2	6	n	0.27	3	8	3	8	y	ENSMUSG00000024276.8	Zfp397	chr18	protein_coding	zinc finger protein 397
known_NIR_8866	chr18	24151225	24152889	-	24151225	24153275	A5SS	ENSMUST00000153337.2	known	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.19	3	13	3	13	y	0.40	6	9	6	9	y	0.15	3	17	3	17	y	0.50	3	3	3	3	n	0.38	5	8	5	8	y	0.60	6	4	6	4	y	0.40	2	3	2	3	n	0.38	6	10	6	10	y	0.40	6	9	6	9	y	0.39	7	11	7	11	y	ENSMUSG00000051469.15	Zfp24	chr18	protein_coding	zinc finger protein 24
known_NIR_8867	chr18	24151225	24152889	-	24151225	24153769	A5SS	ENSMUST00000066497.12	known	0.00	0	16	0	16	n	0.12	1	7	1	7	n	0.12	3	23	3	23	y	0.55	6	5	6	5	y	0.23	3	10	3	10	y	0.25	3	9	3	9	y	0.33	5	10	5	10	y	0.46	6	7	6	7	y	0.25	2	6	2	6	n	0.29	6	15	6	15	y	0.86	6	1	6	1	n	0.50	7	7	7	7	y	ENSMUSG00000051469.15	Zfp24	chr18	protein_coding	zinc finger protein 24
known_NIR_8868	chr18	24151225	24153275	-	24151225	24153769	A5SS	ENSMUST00000066497.12	known	0.24	5	16	5	16	y	0.30	3	7	3	7	y	0.36	13	23	13	23	y	0.64	9	5	9	5	y	0.63	17	10	17	10	y	0.25	3	9	3	9	y	0.44	8	10	8	10	y	0.36	4	7	4	7	y	0.33	3	6	3	6	n	0.40	10	15	10	15	y	0.90	9	1	9	1	n	0.61	11	7	11	7	y	ENSMUSG00000051469.15	Zfp24	chr18	protein_coding	zinc finger protein 24
known_NIR_8869	chr18	24339137	24365656	+	24338575	24365656	A5SS	ENSMUST00000000430.14	known	1.00	4	0	4	0	n	1.00	3	0	3	0	n	1.00	9	0	9	0	n	0.91	21	2	21	2	y	1.00	13	0	13	0	n	1.00	13	0	13	0	n	1.00	9	0	9	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	9	0	9	0	n	1.00	4	0	4	0	n	1.00	11	0	11	0	n	ENSMUSG00000000420.16	Galnt1	chr18	protein_coding	polypeptide N-acetylgalactosaminyltransferase 1
known_NIR_8870	chr18	24339408	24365656	+	24338575	24365656	A5SS	ENSMUST00000000430.14	known	1.00	17	0	17	0	n	-	-	-	-	-	-	1.00	13	0	13	0	n	0.88	15	2	15	2	y	1.00	19	0	19	0	n	1.00	1	0	1	0	n	1.00	9	0	9	0	n	1.00	5	0	5	0	n	1.00	8	0	8	0	n	1.00	5	0	5	0	n	1.00	10	0	10	0	n	1.00	7	0	7	0	n	ENSMUSG00000000420.16	Galnt1	chr18	protein_coding	polypeptide N-acetylgalactosaminyltransferase 1
known_NIR_8871	chr18	24339408	24365656	+	24339137	24365656	A5SS	ENSMUST00000170243.8	known	0.81	17	4	17	4	y	0.00	0	3	0	3	n	0.59	13	9	13	9	y	0.42	15	21	15	21	y	0.59	19	13	19	13	y	0.07	1	13	1	13	n	0.50	9	9	9	9	y	1.00	5	0	5	0	n	1.00	8	0	8	0	n	0.36	5	9	5	9	y	0.71	10	4	10	4	y	0.39	7	11	7	11	y	ENSMUSG00000000420.16	Galnt1	chr18	protein_coding	polypeptide N-acetylgalactosaminyltransferase 1
known_NIR_8872	chr18	24371542	24387575	+	24371542;24379281	24379107;24387575	ES	ENSMUST00000000430.14	known	0.00	0	46.0	0	39;53	n	0.05	2	42.0	2	57;27	y	0.04	3	64.0	3	68;60	y	0.03	2	65.5	2	66;65	y	0.03	3	85.0	3	79;91	y	0.05	2	40.0	2	37;43	y	0.00	0	93.5	0	95;92	n	0.00	0	54.0	0	52;56	n	0.04	2	53.0	2	52;54	y	0.00	0	71.0	0	66;76	n	0.02	1	47.0	1	53;41	n	0.03	2	65.0	2	76;54	y	ENSMUSG00000000420.16	Galnt1	chr18	protein_coding	polypeptide N-acetylgalactosaminyltransferase 1
known_NIR_8873	chr18	24371542;24379281	24379107;24397382	+	24371542;24387741	24387575;24397382	MXE	ENSMUST00000171583.2	known	0.38	19.5	31.5	39;0	0;63	n	0.49	29.0	30.5	57;1	2;59	n	0.46	34.0	40.5	68;0	3;78	n	0.45	35.0	43.0	66;4	2;84	y	0.45	41.0	50.5	79;3	3;98	y	0.37	18.5	31.5	37;0	2;61	n	0.54	47.5	41.0	95;0	0;82	n	0.51	26.0	25.0	52;0	0;50	n	0.48	26.0	28.0	52;0	2;54	n	0.36	33.0	59.5	66;0	0;119	n	0.46	26.5	31.5	53;0	1;62	n	0.41	38.0	54.5	76;0	2;107	n	ENSMUSG00000000420.16	Galnt1	chr18	protein_coding	polypeptide N-acetylgalactosaminyltransferase 1
known_NIR_8874	chr18	24379281	24397382	+	24379281	24387575	3pMXE	ENSMUST00000164998.8	known	0.00	0	53	0	53	n	0.04	1	27	1	27	n	0.00	0	60	0	60	n	0.06	4	65	4	65	y	0.03	3	91	3	91	y	0.00	0	43	0	43	n	0.00	0	92	0	92	n	0.00	0	56	0	56	n	0.00	0	54	0	54	n	0.00	0	76	0	76	n	0.00	0	41	0	41	n	0.00	0	54	0	54	n	ENSMUSG00000000420.16	Galnt1	chr18	protein_coding	polypeptide N-acetylgalactosaminyltransferase 1
known_NIR_8875	chr18	24379281	24397382	+	24379281;24387741	24387575;24397382	ES	ENSMUST00000000430.14	known	0.00	0	58.0	0	53;63	n	0.02	1	43.0	1	27;59	n	0.00	0	69.0	0	60;78	n	0.05	4	74.5	4	65;84	y	0.03	3	94.5	3	91;98	y	0.00	0	52.0	0	43;61	n	0.00	0	87.0	0	92;82	n	0.00	0	53.0	0	56;50	n	0.00	0	54.0	0	54;54	n	0.00	0	97.5	0	76;119	n	0.00	0	51.5	0	41;62	n	0.00	0	80.5	0	54;107	n	ENSMUSG00000000420.16	Galnt1	chr18	protein_coding	polypeptide N-acetylgalactosaminyltransferase 1
known_NIR_8876	chr18	24415293	24415596	+	24415293	24417767	A3SS	ENSMUST00000000430.14	known	0.00	0	105	0	105	n	0.00	0	75	0	75	n	0.00	0	109	0	109	n	0.02	2	122	2	122	y	0.00	0	140	0	140	n	0.00	0	76	0	76	n	0.00	0	140	0	140	n	0.00	0	55	0	55	n	0.00	0	74	0	74	n	0.00	0	147	0	147	n	0.00	0	107	0	107	n	0.00	0	109	0	109	n	ENSMUSG00000000420.16	Galnt1	chr18	protein_coding	polypeptide N-acetylgalactosaminyltransferase 1
known_NIR_8877	chr18	24604037	24604119	+	24604037	24608582	A3SS	ENSMUST00000234303.2	known	1.00	24	0	24	0	n	1.00	28	0	28	0	n	1.00	22	0	22	0	n	1.00	30	0	30	0	n	0.98	43	1	43	1	n	1.00	15	0	15	0	n	0.97	33	1	33	1	n	1.00	6	0	6	0	n	0.90	18	2	18	2	y	0.97	29	1	29	1	n	0.86	25	4	25	4	y	0.93	39	3	39	3	y	ENSMUSG00000024273.9	2700062C07Rik	chr18	protein_coding	RIKEN cDNA 2700062C07 gene
known_NIR_8878	chr18	24604037	24608582	+	24606206	24608582	A5SS&ES	ENSMUST00000234559.2	known	0.00	0	27	0	27	n	0.00	0	25	0	25	n	0.00	0	32	0	32	n	0.00	0	29	0	29	n	0.02	1	43	1	43	n	0.00	0	11	0	11	n	0.03	1	37	1	37	n	0.00	0	20	0	20	n	0.05	2	35	2	35	y	0.03	1	38	1	38	n	0.14	4	24	4	24	y	0.08	3	33	3	33	y	ENSMUSG00000024273.9	2700062C07Rik	chr18	protein_coding	RIKEN cDNA 2700062C07 gene
known_NIR_8879	chr18	24739992;24742757	24742687;24744970	+	24739992	24744970	cassetteExon	ENSMUST00000234903.2	known	0.90	17.5	2	13;22	2	y	1.00	16.5	0	21;12	0	n	0.91	39.5	4	42;37	4	y	1.00	36.0	0	37;35	0	n	1.00	50.0	0	47;53	0	n	1.00	19.5	0	15;24	0	n	1.00	23.0	0	24;22	0	n	1.00	29.5	0	28;31	0	n	1.00	28.5	0	32;25	0	n	1.00	40.5	0	45;36	0	n	1.00	23.0	0	25;21	0	n	1.00	37.0	0	38;36	0	n	ENSMUSG00000024271.9	Elp2	chr18	protein_coding	elongator acetyltransferase complex subunit 2
known_NIR_8880	chr18	24822119	24822644	+	24822119	24825575	A3SS	ENSMUST00000068006.9	known	0.03	3	114	3	114	y	0.08	12	131	12	131	y	0.09	13	130	13	130	y	0.05	7	123	7	123	y	0.08	16	178	16	178	y	0.09	6	60	6	60	y	0.05	10	197	10	197	y	0.05	4	75	4	75	y	0.05	6	125	6	125	y	0.04	8	191	8	191	y	0.09	12	123	12	123	y	0.06	9	140	9	140	y	ENSMUSG00000039616.11	Mocos	chr18	protein_coding	molybdenum cofactor sulfurase
known_NIR_8881	chr18	31768184	31769035	+	31767542	31769035	A5SS	ENSMUST00000234760.2	known	0.17	2	10	2	10	y	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.07	1	14	1	14	n	0.09	1	10	1	10	n	0.00	0	9	0	9	n	0.09	1	10	1	10	n	0.08	1	11	1	11	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	ENSMUSG00000024260.15	Sap130	chr18	protein_coding	Sin3A associated protein
known_NIR_8882	chr18	31768606	31769035	+	31767542	31769035	A5SS	ENSMUST00000234760.2	known	0.17	2	10	2	10	y	0.00	0	7	0	7	n	0.30	3	7	3	7	y	0.07	1	14	1	14	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	ENSMUSG00000024260.15	Sap130	chr18	protein_coding	Sin3A associated protein
known_NIR_8883	chr18	31813724	31815063	+	31813724	31815060	A3SS	ENSMUST00000235017.2	known	0.77	17	5	17	5	y	0.55	6	5	6	5	y	0.79	19	5	19	5	y	0.79	15	4	15	4	y	0.50	18	18	18	18	y	0.48	10	11	10	11	y	0.39	7	11	7	11	y	0.42	5	7	5	7	y	0.59	10	7	10	7	y	0.57	12	9	12	9	y	0.64	14	8	14	8	y	0.70	14	6	14	6	y	ENSMUSG00000024260.15	Sap130	chr18	protein_coding	Sin3A associated protein
known_NIR_8884	chr18	31894240	31894833	+	31893247	31894833	A5SS	ENSMUST00000234500.2	known	0.18	8	37	8	37	y	0.04	1	24	1	24	n	0.00	0	61	0	61	n	0.09	5	51	5	51	y	0.03	2	58	2	58	y	0.00	0	21	0	21	n	0.11	5	41	5	41	y	0.00	0	29	0	29	n	0.09	2	20	2	20	y	0.09	7	71	7	71	y	0.07	2	27	2	27	y	0.09	5	52	5	52	y	ENSMUSG00000041915.10	Ammecr1l	chr18	protein_coding	AMME chromosomal region gene 1-like
known_NIR_8885	chr18	31912006;31913222	31913095;31913697	+	31912006	31913697	cassetteExon	ENSMUST00000115808.4	known	0.06	4.0	61	0;8	61	n	0.16	7.5	40	5;10	40	y	0.06	4.0	65	3;5	65	y	0.10	8.5	73	7;10	73	y	0.12	12.5	89	15;10	89	y	0.13	6.5	45	5;8	45	y	0.08	5.0	57	6;4	57	y	0.09	5.0	49	4;6	49	y	0.12	7.0	51	7;7	51	y	0.14	14.5	91	14;15	91	y	0.15	8.5	48	9;8	48	y	0.08	7.0	79	7;7	79	y	ENSMUSG00000041915.10	Ammecr1l	chr18	protein_coding	AMME chromosomal region gene 1-like
known_NIR_8886	chr18	31925073	31929103	+	31925073;31928436	31928341;31929103	ES	ENSMUST00000025106.5	known	0.05	1	21.0	1	15;27	n	0.09	3	30.5	3	22;39	y	0.07	3	38.5	3	49;28	y	0.07	2	28.5	2	26;31	y	0.00	0	36.0	0	32;40	n	0.00	0	20.5	0	13;28	n	0.02	1	43.5	1	41;46	n	0.13	3	20.5	3	20;21	y	0.16	5	26.0	5	22;30	y	0.09	3	30.5	3	20;41	y	0.00	0	23.0	0	21;25	n	0.00	0	25.0	0	14;36	n	ENSMUSG00000024258.5	Polr2d	chr18	protein_coding	polymerase (RNA) II (DNA directed) polypeptide D
known_NIR_8887	chr18	31968534	32011077	+	31968534	31974489	3pMXE	ENSMUST00000234957.2	known	1.00	16	0	16	0	n	1.00	12	0	12	0	n	0.95	36	2	36	2	y	1.00	23	0	23	0	n	1.00	30	0	30	0	n	1.00	12	0	12	0	n	0.97	31	1	31	1	n	0.95	19	1	19	1	n	1.00	15	0	15	0	n	1.00	35	0	35	0	n	0.93	14	1	14	1	n	1.00	23	0	23	0	n	ENSMUSG00000024400.17	Wdr33	chr18	protein_coding	WD repeat domain 33
known_NIR_8888	chr18	32064603	32074690	+	32064603	32074793	A3SS	ENSMUST00000025254.9	known	0.05	7	125	7	125	y	0.09	10	103	10	103	y	0.07	5	62	5	62	y	0.09	10	106	10	106	y	0.05	9	172	9	172	y	0.10	5	47	5	47	y	0.06	7	111	7	111	y	0.16	9	47	9	47	y	0.03	2	76	2	76	y	0.05	6	119	6	119	y	0.03	3	103	3	103	y	0.06	4	64	4	64	y	ENSMUSG00000024395.10	Lims2	chr18	protein_coding	LIM and senescent cell antigen like domains 2
known_NIR_8889	chr18	32064603	32074793	+	32055529	32074793	A5SS	ENSMUST00000233994.2	known	0.90	125	14	125	14	y	0.93	103	8	103	8	y	0.95	62	3	62	3	y	0.91	106	11	106	11	y	0.94	172	11	172	11	y	0.85	47	8	47	8	y	0.82	111	24	111	24	y	0.90	47	5	47	5	y	0.90	76	8	76	8	y	0.89	119	15	119	15	y	0.90	103	12	103	12	y	0.91	64	6	64	6	y	ENSMUSG00000024395.10	Lims2	chr18	protein_coding	LIM and senescent cell antigen like domains 2
known_NIR_8890	chr18	32070578	32074793	+	32055529	32074793	A5SS	ENSMUST00000233994.2	known	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.11	3	24	3	24	y	0.00	0	5	0	5	n	0.11	1	8	1	8	n	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	ENSMUSG00000024395.10	Lims2	chr18	protein_coding	LIM and senescent cell antigen like domains 2
known_NIR_8891	chr18	32070578	32074793	+	32064603	32074793	A5SS	ENSMUST00000025254.9	known	0.00	0	125	0	125	n	0.00	0	103	0	103	n	0.00	0	62	0	62	n	0.00	0	106	0	106	n	0.00	0	172	0	172	n	0.00	0	47	0	47	n	0.03	3	111	3	111	y	0.00	0	47	0	47	n	0.01	1	76	1	76	n	0.00	0	119	0	119	n	0.00	0	103	0	103	n	0.00	0	64	0	64	n	ENSMUSG00000024395.10	Lims2	chr18	protein_coding	LIM and senescent cell antigen like domains 2
known_NIR_8892	chr18	32088135	32088311	+	32087638	32088311	A5SS	ENSMUST00000234549.2	known	0.00	0	156	0	156	n	0.01	2	152	2	152	y	0.00	0	77	0	77	n	0.00	0	169	0	169	n	0.00	0	167	0	167	n	0.00	0	71	0	71	n	0.00	0	189	0	189	n	0.00	0	85	0	85	n	0.00	0	126	0	126	n	0.00	0	161	0	161	n	0.00	0	138	0	138	n	0.00	0	105	0	105	n	ENSMUSG00000024395.10	Lims2	chr18	protein_coding	LIM and senescent cell antigen like domains 2
known_NIR_8893	chr18	32268031	32268914	-	32268066	32268914	A3SS	ENSMUST00000234651.2	known	0.02	25	1331	25	1331	y	0.02	31	1384	31	1384	y	0.01	12	797	12	797	y	0.02	28	1616	28	1616	y	0.02	37	1517	37	1517	y	0.03	15	573	15	573	y	0.02	24	1473	24	1473	y	0.03	22	750	22	750	y	0.03	35	1314	35	1314	y	0.01	30	1982	30	1982	y	0.02	25	1491	25	1491	y	0.02	34	1821	34	1821	y	ENSMUSG00000024386.10	Proc	chr18	protein_coding	protein C
known_NIR_8894	chr18	32269000	32271001	-	32269000	32271182	A5SS	ENSMUST00000234651.2	known	0.01	5	480	5	480	y	0.02	8	493	8	493	y	0.02	5	295	5	295	y	0.01	8	645	8	645	y	0.02	9	578	9	578	y	0.01	3	206	3	206	y	0.01	6	592	6	592	y	0.01	3	326	3	326	y	0.03	14	516	14	516	y	0.03	22	790	22	790	y	0.02	12	585	12	585	y	0.02	15	724	15	724	y	ENSMUSG00000024386.10	Proc	chr18	protein_coding	protein C
known_NIR_8895	chr18	32269004	32270600	-	32269004	32272563	A5SS	ENSMUST00000171765.2	known	0.99	123	1	123	1	n	0.94	114	7	114	7	y	1.00	68	0	68	0	n	0.96	154	7	154	7	y	0.99	154	2	154	2	y	1.00	48	0	48	0	n	0.96	121	5	121	5	y	0.92	73	6	73	6	y	0.96	120	5	120	5	y	0.95	173	9	173	9	y	0.95	116	6	116	6	y	0.98	171	4	171	4	y	ENSMUSG00000024386.10	Proc	chr18	protein_coding	protein C
known_NIR_8896	chr18	32270663	32271182	-	32269000	32271182	A3SS	ENSMUST00000234651.2	known	0.13	72	480	72	480	y	0.12	67	493	67	493	y	0.11	38	295	38	295	y	0.11	79	645	79	645	y	0.13	84	578	84	578	y	0.12	28	206	28	206	y	0.14	98	592	98	592	y	0.09	31	326	31	326	y	0.13	78	516	78	516	y	0.10	89	790	89	790	y	0.11	70	585	70	585	y	0.10	84	724	84	724	y	ENSMUSG00000024386.10	Proc	chr18	protein_coding	protein C
known_NIR_8897	chr18	32270663;32271000	32270830;32271182	-	32270663	32271182	cassetteExon	ENSMUST00000234386.2	known	0.23	21.0	72	21;21	72	y	0.18	15.0	67	16;14	67	y	0.30	16.5	38	18;15	38	y	0.11	9.5	79	11;8	79	y	0.28	32.0	84	39;25	84	y	0.27	10.5	28	13;8	28	y	0.22	27.5	98	30;25	98	y	0.27	11.5	31	8;15	31	y	0.09	8.0	78	12;4	78	y	0.14	14.0	89	12;16	89	y	0.11	9.0	70	10;8	70	y	0.16	16.5	84	24;9	84	y	ENSMUSG00000024386.10	Proc	chr18	protein_coding	protein C
known_NIR_8898	chr18	32271000	32271182	-	32269000	32271182	A3SS	ENSMUST00000234651.2	known	0.04	21	480	21	480	y	0.03	14	493	14	493	y	0.05	15	295	15	295	y	0.01	8	645	8	645	y	0.04	25	578	25	578	y	0.04	8	206	8	206	y	0.04	25	592	25	592	y	0.04	15	326	15	326	y	0.01	4	516	4	516	y	0.02	16	790	16	790	y	0.01	8	585	8	585	y	0.01	9	724	9	724	y	ENSMUSG00000024386.10	Proc	chr18	protein_coding	protein C
known_NIR_8899	chr18	32390445	32397601	+	32390445;32394451	32394355;32397601	ES	ENSMUST00000025241.7	known	0.01	1	68.0	1	74;62	n	0.08	4	49.0	4	48;50	y	0.04	3	64.0	3	58;70	y	0.08	5	54.5	5	46;63	y	0.00	0	81.0	0	78;84	n	0.06	3	47.5	3	49;46	y	0.00	0	78.0	0	69;87	n	0.00	0	34.5	0	35;34	n	0.11	5	40.5	5	36;45	y	0.04	3	72.0	3	75;69	y	0.05	4	72.5	4	72;73	y	0.02	1	49.5	1	41;58	n	ENSMUSG00000024382.14	Ercc3	chr18	protein_coding	excision repair cross-complementing rodent repair deficiency, complementation group 3
known_NIR_8900	chr18	32558020	32559277	+	32558020	32565036	A3SS	ENSMUST00000234496.2	known	0.09	2	21	2	21	y	0.00	0	16	0	16	n	0.09	2	21	2	21	y	0.09	2	21	2	21	y	0.14	3	19	3	19	y	0.00	0	15	0	15	n	0.09	6	58	6	58	y	0.00	0	15	0	15	n	0.06	1	15	1	15	n	0.05	1	21	1	21	n	0.12	3	22	3	22	y	0.00	0	25	0	25	n	ENSMUSG00000024381.17	Bin1	chr18	protein_coding	bridging integrator 1
known_NIR_8901	chr18	32558020	32565036	+	32558020;32564795	32564724;32565036	ES	ENSMUST00000234857.2	known	0.67	21	10.5	21	6;15	y	0.57	16	12.0	16	9;15	y	0.57	21	16.0	21	10;22	y	0.64	21	12.0	21	12;12	y	0.51	19	18.5	19	21;16	y	0.71	15	6.0	15	6;6	y	0.55	58	47.5	58	41;54	y	0.57	15	11.5	15	11;12	y	0.79	15	4.0	15	2;6	y	0.74	21	7.5	21	7;8	y	0.69	22	10.0	22	11;9	y	0.68	25	11.5	25	6;17	y	ENSMUSG00000024381.17	Bin1	chr18	protein_coding	bridging integrator 1
known_NIR_8902	chr18	32558020;32559405	32559277;32564724	+	32558020	32564724	cassetteExon	ENSMUST00000234857.2	known	0.33	3.0	6	2;4	6	y	0.00	0.0	9	0;0	9	n	0.17	2.0	10	2;2	10	y	0.08	1.0	12	2;0	12	n	0.09	2.0	21	3;1	21	n	0.14	1.0	6	0;2	6	n	0.09	4.0	41	6;2	41	y	0.00	0.0	11	0;0	11	n	0.33	1.0	2	1;1	2	n	0.12	1.0	7	1;1	7	n	0.12	1.5	11	3;0	11	n	0.00	0.0	6	0;0	6	n	ENSMUSG00000024381.17	Bin1	chr18	protein_coding	bridging integrator 1
known_NIR_8903	chr18	3268129	3273422	-	3267732	3273422	A3SS	ENSMUST00000151311.8	known	0.81	55	13	55	13	y	0.92	71	6	71	6	y	0.94	129	8	129	8	y	0.85	53	9	53	9	y	0.75	71	24	71	24	y	0.86	56	9	56	9	y	0.86	85	14	85	14	y	0.82	33	7	33	7	y	0.85	69	12	69	12	y	0.87	90	13	90	13	y	0.90	55	6	55	6	y	0.86	106	17	106	17	y	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
known_NIR_8904	chr18	3273578	3280949	-	3273578	3276694	A5SS&ES	ENSMUST00000150235.8	known	0.45	31	38	31	38	y	0.40	25	37	25	37	y	0.28	38	96	38	96	y	0.41	33	47	33	47	y	0.40	41	62	41	62	y	0.29	15	37	15	37	y	0.40	38	58	38	58	y	0.45	23	28	23	28	y	0.38	32	53	32	53	y	0.52	42	39	42	39	y	0.32	25	54	25	54	y	0.44	58	74	58	74	y	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
known_NIR_8905	chr18	3273578	3280949	-	3273578	3281688	A5SS	ENSMUST00000140332.8	known	0.91	31	3	31	3	y	0.89	25	3	25	3	y	0.60	38	25	38	25	y	0.92	33	3	33	3	y	0.91	41	4	41	4	y	0.75	15	5	15	5	y	0.90	38	4	38	4	y	0.85	23	4	23	4	y	0.94	32	2	32	2	y	0.91	42	4	42	4	y	0.96	25	1	25	1	n	0.77	58	17	58	17	y	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
known_NIR_8906	chr18	3273578	3280949	-	3273578	3287904	A5SS	ENSMUST00000151311.8	known	0.91	31	3	31	3	y	0.83	25	5	25	5	y	0.93	38	3	38	3	y	0.97	33	1	33	1	n	1.00	41	0	41	0	n	0.94	15	1	15	1	n	0.97	38	1	38	1	n	0.85	23	4	23	4	y	0.97	32	1	32	1	n	0.98	42	1	42	1	n	0.96	25	1	25	1	n	0.98	58	1	58	1	n	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
known_NIR_8907	chr18	3273578	3280949	-	3273578	3295040	A5SS	ENSMUST00000154470.8	known	0.86	31	5	31	5	y	0.83	25	5	25	5	y	0.88	38	5	38	5	y	0.94	33	2	33	2	y	0.87	41	6	41	6	y	0.83	15	3	15	3	y	0.78	38	11	38	11	y	0.82	23	5	23	5	y	0.86	32	5	32	5	y	0.93	42	3	42	3	y	1.00	25	0	25	0	n	0.92	58	5	58	5	y	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
known_NIR_8908	chr18	3273578	3280949	-	3273578;3276729	3276694;3280949	ES	ENSMUST00000124747.8	known	0.45	31	38.0	31	38;38	y	0.44	25	32.0	25	37;27	y	0.34	38	75.0	38	96;54	y	0.46	33	39.5	33	47;32	y	0.44	41	53.0	41	62;44	y	0.29	15	36.0	15	37;35	y	0.42	38	52.0	38	58;46	y	0.51	23	22.5	23	28;17	y	0.43	32	43.0	32	53;33	y	0.53	42	37.0	42	39;35	y	0.37	25	43.0	25	54;32	y	0.52	58	54.5	58	74;35	y	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
known_NIR_8909	chr18	3273578	3280949	-	3273578;3276775	3276694;3280949	ES	ENSMUST00000049942.13	known	0.57	31	23.0	31	38;8	y	0.53	25	22.0	25	37;7	y	0.42	38	52.0	38	96;8	y	0.57	33	25.0	33	47;3	y	0.57	41	31.0	41	62;0	n	0.42	15	20.5	15	37;4	y	0.55	38	30.5	38	58;3	y	0.62	23	14.0	23	28;0	n	0.53	32	28.0	32	53;3	y	0.68	42	20.0	42	39;1	n	0.48	25	27.0	25	54;0	n	0.59	58	41.0	58	74;8	y	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
known_NIR_8910	chr18	3273578	3281688	-	3273578	3276694	A5SS&ES	ENSMUST00000150235.8	known	0.07	3	38	3	38	y	0.07	3	37	3	37	y	0.21	25	96	25	96	y	0.06	3	47	3	47	y	0.06	4	62	4	62	y	0.12	5	37	5	37	y	0.06	4	58	4	58	y	0.12	4	28	4	28	y	0.04	2	53	2	53	y	0.09	4	39	4	39	y	0.02	1	54	1	54	n	0.19	17	74	17	74	y	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
known_NIR_8911	chr18	3273578	3281688	-	3273578	3287904	A5SS	ENSMUST00000151311.8	known	0.50	3	3	3	3	n	0.38	3	5	3	5	n	0.89	25	3	25	3	y	0.75	3	1	3	1	n	1.00	4	0	4	0	n	0.83	5	1	5	1	n	0.80	4	1	4	1	n	0.50	4	4	4	4	n	0.67	2	1	2	1	n	0.80	4	1	4	1	n	0.50	1	1	1	1	n	0.94	17	1	17	1	n	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
known_NIR_8912	chr18	3273578	3287904	-	3273578	3276694	A5SS&ES	ENSMUST00000148305.2	known	0.07	3	38	3	38	y	0.12	5	37	5	37	y	0.03	3	96	3	96	y	0.02	1	47	1	47	n	0.00	0	62	0	62	n	0.03	1	37	1	37	n	0.02	1	58	1	58	n	0.12	4	28	4	28	y	0.02	1	53	1	53	n	0.03	1	39	1	39	n	0.02	1	54	1	54	n	0.01	1	74	1	74	n	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
known_NIR_8913	chr18	3273578	3295040	-	3273578	3281688	5pMXE	ENSMUST00000140332.8	known	0.62	5	3	5	3	n	0.62	5	3	5	3	n	0.17	5	25	5	25	y	0.40	2	3	2	3	n	0.60	6	4	6	4	y	0.38	3	5	3	5	n	0.73	11	4	11	4	y	0.56	5	4	5	4	n	0.71	5	2	5	2	n	0.43	3	4	3	4	n	0.00	0	1	0	1	n	0.23	5	17	5	17	y	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
known_NIR_8914	chr18	3273578	3295040	-	3273578;3276729	3276694;3295040	ES	ENSMUST00000154135.8	known	0.21	5	19.0	5	38;0	n	0.20	5	20.0	5	37;3	y	0.09	5	52.0	5	96;8	y	0.07	2	26.5	2	47;6	y	0.16	6	32.0	6	62;2	y	0.14	3	18.5	3	37;0	n	0.27	11	29.5	11	58;1	n	0.26	5	14.5	5	28;1	n	0.15	5	27.5	5	53;2	y	0.13	3	20.5	3	39;2	y	0.00	0	28.5	0	54;3	n	0.11	5	39.5	5	74;5	y	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
known_NIR_8915	chr18	3273578	3295040	-	3273578;3288092	3287904;3295040	ES	ENSMUST00000151311.8	known	0.62	5	3.0	5	3;3	y	0.67	5	2.5	5	5;0	n	0.53	5	4.5	5	3;6	y	0.40	2	3.0	2	1;5	n	0.75	6	2.0	6	0;4	n	0.38	3	5.0	3	1;9	n	0.79	11	3.0	11	1;5	n	0.50	5	5.0	5	4;6	y	0.71	5	2.0	5	1;3	n	0.75	3	1.0	3	1;1	n	0.00	0	6.0	0	1;11	n	0.67	5	2.5	5	1;4	n	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
known_NIR_8916	chr18	3273578	3295040	-	3288092	3295040	3pMXE	ENSMUST00000130047.8	known	0.62	5	3	5	3	n	1.00	5	0	5	0	n	0.45	5	6	5	6	y	0.29	2	5	2	5	n	0.60	6	4	6	4	y	0.25	3	9	3	9	y	0.69	11	5	11	5	y	0.45	5	6	5	6	y	0.62	5	3	5	3	n	0.75	3	1	3	1	n	0.00	0	11	0	11	n	0.56	5	4	5	4	n	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
known_NIR_8917	chr18	3273578;3276729	3276694;3281688	-	3273578	3281688	cassetteExon	ENSMUST00000140332.8	known	0.87	20.0	3	38;2	3	y	0.87	20.5	3	37;4	3	y	0.73	66.0	25	96;36	25	y	0.90	26.5	3	47;6	3	y	0.90	36.0	4	62;10	4	y	0.81	22.0	5	37;7	5	y	0.90	34.5	4	58;11	4	y	0.81	17.5	4	28;7	4	y	0.94	32.0	2	53;11	2	y	0.84	21.0	4	39;3	4	y	0.97	32.5	1	54;11	1	n	0.74	47.5	17	74;21	17	y	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
known_NIR_8918	chr18	3273578;3276729	3276694;3287904	-	3273578	3287904	cassetteExon	ENSMUST00000151311.8	known	0.87	19.5	3	38;1	3	n	0.80	19.5	5	37;2	5	y	0.94	49.5	3	96;3	3	y	0.96	23.5	1	47;0	1	n	1.00	32.0	0	62;2	0	n	0.95	18.5	1	37;0	1	n	0.97	31.0	1	58;4	1	n	0.78	14.0	4	28;0	4	n	0.96	26.5	1	53;0	1	n	0.96	22.0	1	39;5	1	n	0.97	28.0	1	54;2	1	n	0.97	37.5	1	74;1	1	n	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
known_NIR_8919	chr18	3273578;3276729	3276694;3295040	-	3273578;3288092	3287904;3295040	MXE	ENSMUST00000151311.8	known	0.86	19.0	3.0	38;0	3;3	n	0.89	20.0	2.5	37;3	5;0	n	0.92	52.0	4.5	96;8	3;6	y	0.90	26.5	3.0	47;6	1;5	n	0.94	32.0	2.0	62;2	0;4	n	0.79	18.5	5.0	37;0	1;9	n	0.91	29.5	3.0	58;1	1;5	n	0.74	14.5	5.0	28;1	4;6	n	0.93	27.5	2.0	53;2	1;3	n	0.95	20.5	1.0	39;2	1;1	n	0.83	28.5	6.0	54;3	1;11	n	0.94	39.5	2.5	74;5	1;4	n	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
known_NIR_8920	chr18	3273578;3276729	3276694;3325361	-	3273578;3295416	3287904;3325361	MXE	ENSMUST00000151311.8	known	0.85	19.5	3.5	38;1	3;4	n	0.81	19.5	4.5	37;2	5;4	y	0.84	49.0	9.0	96;2	3;15	y	0.80	23.5	6.0	47;0	1;11	n	0.89	31.0	4.0	62;0	0;8	n	0.81	19.0	4.5	37;1	1;8	n	0.94	29.0	2.0	58;0	1;3	n	0.76	14.0	4.5	28;0	4;5	n	0.87	27.5	4.0	53;2	1;7	n	0.80	19.5	5.0	39;0	1;9	n	0.95	27.0	1.5	54;0	1;2	n	0.86	37.0	6.0	74;0	1;11	n	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
known_NIR_8921	chr18	3273578;3276729	3276694;3325361	-	3273578;3295416	3295040;3325361	MXE	ENSMUST00000137568.8	known	0.81	19.5	4.5	38;1	5;4	n	0.81	19.5	4.5	37;2	5;4	y	0.83	49.0	10.0	96;2	5;15	y	0.78	23.5	6.5	47;0	2;11	n	0.82	31.0	7.0	62;0	6;8	n	0.78	19.0	5.5	37;1	3;8	n	0.81	29.0	7.0	58;0	11;3	n	0.74	14.0	5.0	28;0	5;5	n	0.82	27.5	6.0	53;2	5;7	y	0.76	19.5	6.0	39;0	3;9	n	0.96	27.0	1.0	54;0	0;2	n	0.82	37.0	8.0	74;0	5;11	n	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
known_NIR_8922	chr18	3273578;3276729	3276694;3325361	-	3273578;3299308	3287904;3325361	MXE	ENSMUST00000025069.11	known	0.91	19.5	2.0	38;1	3;1	n	0.87	19.5	3.0	37;2	5;1	n	0.92	49.0	4.0	96;2	3;5	y	0.89	23.5	3.0	47;0	1;5	n	0.97	31.0	1.0	62;0	0;2	n	0.86	19.0	3.0	37;1	1;5	n	0.98	29.0	0.5	58;0	1;0	n	0.78	14.0	4.0	28;0	4;4	n	0.95	27.5	1.5	53;2	1;2	n	0.89	19.5	2.5	39;0	1;4	n	0.90	27.0	3.0	54;0	1;5	n	0.97	37.0	1.0	74;0	1;1	n	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
known_NIR_8923	chr18	3273578;3276729	3276694;3325361	-	3273578;3299308	3295040;3325361	MXE	ENSMUST00000154470.8	known	0.87	19.5	3.0	38;1	5;1	n	0.87	19.5	3.0	37;2	5;1	n	0.91	49.0	5.0	96;2	5;5	y	0.87	23.5	3.5	47;0	2;5	n	0.89	31.0	4.0	62;0	6;2	n	0.83	19.0	4.0	37;1	3;5	n	0.84	29.0	5.5	58;0	11;0	n	0.76	14.0	4.5	28;0	5;4	n	0.89	27.5	3.5	53;2	5;2	y	0.85	19.5	3.5	39;0	3;4	n	0.92	27.0	2.5	54;0	0;5	n	0.93	37.0	3.0	74;0	5;1	n	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
known_NIR_8924	chr18	3273578;3276729	3276694;3325361	-	3273578;3309987	3295040;3325361	MXE	ENSMUST00000134027.8	known	0.87	19.5	3.0	38;1	5;1	n	0.87	19.5	3.0	37;2	5;1	n	0.95	49.0	2.5	96;2	5;0	n	0.96	23.5	1.0	47;0	2;0	n	0.89	31.0	4.0	62;0	6;2	n	0.88	19.0	2.5	37;1	3;2	n	0.83	29.0	6.0	58;0	11;1	n	0.85	14.0	2.5	28;0	5;0	n	0.89	27.5	3.5	53;2	5;2	y	0.93	19.5	1.5	39;0	3;0	n	1.00	27.0	0.0	54;0	0;0	n	0.90	37.0	4.0	74;0	5;3	n	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
known_NIR_8925	chr18	3276729	3280949	-	3276729	3287904	A5SS	ENSMUST00000150235.8	known	0.97	38	1	38	1	n	0.93	27	2	27	2	y	0.95	54	3	54	3	y	1.00	32	0	32	0	n	0.96	44	2	44	2	y	1.00	35	0	35	0	n	0.92	46	4	46	4	y	1.00	17	0	17	0	n	1.00	33	0	33	0	n	0.88	35	5	35	5	y	0.94	32	2	32	2	y	0.97	35	1	35	1	n	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
known_NIR_8926	chr18	3276729	3280949	-	3276729	3295040	A5SS	ENSMUST00000154135.8	known	1.00	38	0	38	0	n	0.90	27	3	27	3	y	0.87	54	8	54	8	y	0.84	32	6	32	6	y	0.96	44	2	44	2	y	1.00	35	0	35	0	n	0.98	46	1	46	1	n	0.94	17	1	17	1	n	0.94	33	2	33	2	y	0.95	35	2	35	2	y	0.91	32	3	32	3	y	0.88	35	5	35	5	y	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
known_NIR_8927	chr18	3276729	3281688	-	3276729	3280949	5pMXE	ENSMUST00000124747.8	known	0.05	2	38	2	38	y	0.13	4	27	4	27	y	0.40	36	54	36	54	y	0.16	6	32	6	32	y	0.19	10	44	10	44	y	0.17	7	35	7	35	y	0.19	11	46	11	46	y	0.29	7	17	7	17	y	0.25	11	33	11	33	y	0.08	3	35	3	35	y	0.26	11	32	11	32	y	0.38	21	35	21	35	y	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
known_NIR_8928	chr18	3276729	3281688	-	3276729	3287904	A5SS	ENSMUST00000150235.8	known	0.67	2	1	2	1	n	0.67	4	2	4	2	n	0.92	36	3	36	3	y	1.00	6	0	6	0	n	0.83	10	2	10	2	y	1.00	7	0	7	0	n	0.73	11	4	11	4	y	1.00	7	0	7	0	n	1.00	11	0	11	0	n	0.38	3	5	3	5	n	0.85	11	2	11	2	y	0.95	21	1	21	1	n	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
known_NIR_8929	chr18	3276729	3281688	-	3276729	3295040	A5SS	ENSMUST00000154135.8	known	1.00	2	0	2	0	n	0.57	4	3	4	3	n	0.82	36	8	36	8	y	0.50	6	6	6	6	y	0.83	10	2	10	2	y	1.00	7	0	7	0	n	0.92	11	1	11	1	n	0.88	7	1	7	1	n	0.85	11	2	11	2	y	0.60	3	2	3	2	n	0.79	11	3	11	3	y	0.81	21	5	21	5	y	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
known_NIR_8930	chr18	3276729	3295040	-	3276729;3288092	3287904;3295040	ES	ENSMUST00000150235.8	known	0.00	0	2.0	0	1;3	n	0.75	3	1.0	3	2;0	n	0.64	8	4.5	8	3;6	y	0.71	6	2.5	6	0;5	n	0.40	2	3.0	2	2;4	n	0.00	0	4.5	0	0;9	n	0.18	1	4.5	1	4;5	n	0.25	1	3.0	1	0;6	n	0.57	2	1.5	2	0;3	n	0.40	2	3.0	2	5;1	n	0.32	3	6.5	3	2;11	y	0.67	5	2.5	5	1;4	n	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
known_NIR_8931	chr18	3276729	3295040	-	3288092	3295040	3pMXE	ENSMUST00000130047.8	known	0.00	0	3	0	3	n	1.00	3	0	3	0	n	0.57	8	6	8	6	y	0.55	6	5	6	5	y	0.33	2	4	2	4	n	0.00	0	9	0	9	n	0.17	1	5	1	5	n	0.14	1	6	1	6	n	0.40	2	3	2	3	n	0.67	2	1	2	1	n	0.21	3	11	3	11	y	0.56	5	4	5	4	n	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
known_NIR_8932	chr18	3276729	3325361	-	3276729	3280949	5pMXE	ENSMUST00000124747.8	known	0.03	1	38	1	38	n	0.07	2	27	2	27	y	0.04	2	54	2	54	y	0.00	0	32	0	32	n	0.00	0	44	0	44	n	0.03	1	35	1	35	n	0.00	0	46	0	46	n	0.00	0	17	0	17	n	0.06	2	33	2	33	y	0.00	0	35	0	35	n	0.00	0	32	0	32	n	0.00	0	35	0	35	n	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
known_NIR_8933	chr18	3276729	3325361	-	3276729	3281688	5pMXE	ENSMUST00000147138.8	known	0.33	1	2	1	2	n	0.33	2	4	2	4	n	0.05	2	36	2	36	y	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.12	1	7	1	7	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.15	2	11	2	11	y	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	21	0	21	n	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
known_NIR_8934	chr18	3276729;3295416	3295040;3325361	-	3276729	3325361	cassetteExon	ENSMUST00000148305.2	known	0.67	2.0	1	0;4	1	n	0.64	3.5	2	3;4	2	n	0.85	11.5	2	8;15	2	y	1.00	8.5	0	6;11	0	n	1.00	5.0	0	2;8	0	n	0.80	4.0	1	0;8	1	n	1.00	2.0	0	1;3	0	n	1.00	3.0	0	1;5	0	n	0.69	4.5	2	2;7	2	y	1.00	5.5	0	2;9	0	n	1.00	2.5	0	3;2	0	n	1.00	8.0	0	5;11	0	n	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
known_NIR_8935	chr18	3276775	3280949	-	3276729	3280949	A3SS	ENSMUST00000124747.8	known	0.17	8	38	8	38	y	0.21	7	27	7	27	y	0.13	8	54	8	54	y	0.09	3	32	3	32	y	0.00	0	44	0	44	n	0.10	4	35	4	35	y	0.06	3	46	3	46	y	0.00	0	17	0	17	n	0.08	3	33	3	33	y	0.03	1	35	1	35	n	0.00	0	32	0	32	n	0.19	8	35	8	35	y	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
known_NIR_8936	chr18	3295416	3325361	-	3295416	3309646	5pMXE	ENSMUST00000152108.8	known	0.80	4	1	4	1	n	0.67	4	2	4	2	n	0.83	15	3	15	3	y	0.85	11	2	11	2	y	0.80	8	2	8	2	y	1.00	8	0	8	0	n	1.00	3	0	3	0	n	1.00	5	0	5	0	n	1.00	7	0	7	0	n	0.90	9	1	9	1	n	0.50	2	2	2	2	n	0.92	11	1	11	1	n	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
known_NIR_8937	chr18	3295416;3299308	3299162;3325361	-	3295416	3325361	cassetteExon	ENSMUST00000151311.8	known	0.33	2.0	4	3;1	4	n	0.27	1.5	4	2;1	4	n	0.19	3.5	15	2;5	15	y	0.27	4.0	11	3;5	11	y	0.20	2.0	8	2;2	8	y	0.45	6.5	8	8;5	8	y	0.50	3.0	3	6;0	3	n	0.41	3.5	5	3;4	5	y	0.42	5.0	7	8;2	7	y	0.25	3.0	9	2;4	9	y	0.60	3.0	2	1;5	2	n	0.12	1.5	11	2;1	11	n	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
known_NIR_8938	chr18	3295416;3309987	3309646;3325361	-	3295416	3325361	cassetteExon	ENSMUST00000151311.8	known	0.20	1.0	4	1;1	4	n	0.27	1.5	4	2;1	4	n	0.09	1.5	15	3;0	15	n	0.08	1.0	11	2;0	11	n	0.20	2.0	8	2;2	8	y	0.11	1.0	8	0;2	8	n	0.14	0.5	3	0;1	3	n	0.00	0.0	5	0;0	5	n	0.12	1.0	7	0;2	7	n	0.05	0.5	9	1;0	9	n	0.33	1.0	2	2;0	2	n	0.15	2.0	11	1;3	11	n	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
known_NIR_8939	chr18	3325478	3337380	-	3325478	3327494	5pMXE	ENSMUST00000151311.8	known	1.00	10	0	10	0	n	1.00	10	0	10	0	n	1.00	19	0	19	0	n	1.00	8	0	8	0	n	1.00	14	0	14	0	n	1.00	12	0	12	0	n	1.00	14	0	14	0	n	1.00	7	0	7	0	n	0.83	10	2	10	2	y	1.00	13	0	13	0	n	1.00	15	0	15	0	n	1.00	9	0	9	0	n	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
known_NIR_8940	chr18	33336868	33339173	-	33336868;33338218	33338104;33339173	ES	ENSMUST00000025236.9	known	0.04	4	86.5	4	101;72	y	0.00	0	57.0	0	64;50	n	0.02	2	125.0	2	143;107	y	0.02	3	126.0	3	143;109	y	0.02	3	182.5	3	210;155	y	0.00	0	75.0	0	84;66	n	0.00	0	121.5	0	129;114	n	0.03	3	86.5	3	102;71	y	0.00	0	92.5	0	108;77	n	0.01	1	189.0	1	214;164	n	0.02	2	100.0	2	124;76	y	0.01	2	166.5	2	198;135	y	ENSMUSG00000024378.10	Stard4	chr18	protein_coding	StAR-related lipid transfer (START) domain containing 4
known_NIR_8941	chr18	33336868	33339173	-	33336868;33338378	33338274;33339173	ES	ENSMUST00000119991.8	known	0.80	4	1.0	4	1;1	n	0.00	0	0.5	0	1;0	n	0.29	2	5.0	2	7;3	y	0.46	3	3.5	3	5;2	y	0.46	3	3.5	3	7;0	n	0.00	0	3.5	0	5;2	n	0.00	0	5.0	0	5;5	n	0.30	3	7.0	3	7;7	y	0.00	0	2.0	0	2;2	n	0.12	1	7.5	1	10;5	n	0.21	2	7.5	2	6;9	y	0.20	2	8.0	2	9;7	y	ENSMUSG00000024378.10	Stard4	chr18	protein_coding	StAR-related lipid transfer (START) domain containing 4
known_NIR_8942	chr18	33336868	33339173	-	33338218	33339173	3pMXE	ENSMUST00000141617.2	known	0.05	4	72	4	72	y	0.00	0	50	0	50	n	0.02	2	107	2	107	y	0.03	3	109	3	109	y	0.02	3	155	3	155	y	0.00	0	66	0	66	n	0.00	0	114	0	114	n	0.04	3	71	3	71	y	0.00	0	77	0	77	n	0.01	1	164	1	164	n	0.03	2	76	2	76	y	0.01	2	135	2	135	y	ENSMUSG00000024378.10	Stard4	chr18	protein_coding	StAR-related lipid transfer (START) domain containing 4
known_NIR_8943	chr18	33336868;33338378	33338104;33339173	-	33336868	33339173	cassetteExon	ENSMUST00000118990.2	known	0.93	51.0	4	101;1	4	n	1.00	32.0	0	64;0	0	n	0.97	73.0	2	143;3	2	y	0.96	72.5	3	143;2	3	y	0.97	105.0	3	210;0	3	n	1.00	43.0	0	84;2	0	n	1.00	67.0	0	129;5	0	n	0.95	54.5	3	102;7	3	y	1.00	55.0	0	108;2	0	n	0.99	109.5	1	214;5	1	n	0.97	66.5	2	124;9	2	y	0.98	102.5	2	198;7	2	y	ENSMUSG00000024378.10	Stard4	chr18	protein_coding	StAR-related lipid transfer (START) domain containing 4
known_NIR_8944	chr18	33336868;33338378	33338274;33339173	-	33336868;33338218	33338104;33339173	MXE	ENSMUST00000025236.9	known	0.01	1.0	86.5	1;1	101;72	n	0.01	0.5	57.0	1;0	64;50	n	0.04	5.0	125.0	7;3	143;107	y	0.03	3.5	126.0	5;2	143;109	y	0.02	3.5	182.5	7;0	210;155	n	0.04	3.5	75.0	5;2	84;66	y	0.04	5.0	121.5	5;5	129;114	y	0.07	7.0	86.5	7;7	102;71	y	0.02	2.0	92.5	2;2	108;77	y	0.04	7.5	189.0	10;5	214;164	y	0.07	7.5	100.0	6;9	124;76	y	0.05	8.0	166.5	9;7	198;135	y	ENSMUSG00000024378.10	Stard4	chr18	protein_coding	StAR-related lipid transfer (START) domain containing 4
known_NIR_8945	chr18	33338378	33339173	-	33338218	33339173	A3SS	ENSMUST00000141617.2	known	0.01	1	72	1	72	n	0.00	0	50	0	50	n	0.03	3	107	3	107	y	0.02	2	109	2	109	y	0.00	0	155	0	155	n	0.03	2	66	2	66	y	0.04	5	114	5	114	y	0.09	7	71	7	71	y	0.03	2	77	2	77	y	0.03	5	164	5	164	y	0.11	9	76	9	76	y	0.05	7	135	7	135	y	ENSMUSG00000024378.10	Stard4	chr18	protein_coding	StAR-related lipid transfer (START) domain containing 4
known_NIR_8946	chr18	3383397	3399846	+	3383172	3399846	A5SS	ENSMUST00000025073.12	known	0.64	14	8	14	8	y	0.65	11	6	11	6	y	0.74	28	10	28	10	y	0.71	40	16	40	16	y	0.86	50	8	50	8	y	0.93	27	2	27	2	y	0.92	48	4	48	4	y	0.82	27	6	27	6	y	0.94	15	1	15	1	n	0.80	33	8	33	8	y	0.78	25	7	25	7	y	0.71	27	11	27	11	y	ENSMUSG00000024231.16	Cul2	chr18	protein_coding	cullin 2
known_NIR_8947	chr18	33928177	33928906	+	33928177;33928498	33928436;33928906	ES	ENSMUST00000146010.3	known	0.04	2	43.5	2	54;33	y	0.05	3	57.0	3	62;52	y	0.03	1	31.5	1	35;28	n	0.02	1	54.0	1	58;50	n	0.03	1	37.5	1	45;30	n	0.13	2	13.0	2	14;12	y	0.02	1	52.0	1	49;55	n	0.00	0	19.5	0	24;15	n	0.01	1	66.5	1	72;61	n	0.08	5	58.0	5	57;59	y	0.06	4	64.0	4	73;55	y	0.00	0	69.5	0	73;66	n	ENSMUSG00000087590.3	Epb41l4aos	chr18	lncRNA	erythrocyte membrane protein band 4.1 like 4a, opposite strand
known_NIR_8948	chr18	3431585	3434844	+	3434110	3434844	5pMXE	ENSMUST00000159443.2	known	0.01	1	111	1	111	n	0.01	1	119	1	119	n	0.00	0	108	0	108	n	0.01	1	119	1	119	n	0.02	2	128	2	128	y	0.00	0	53	0	53	n	0.02	3	161	3	161	y	0.00	0	73	0	73	n	0.00	0	107	0	107	n	0.00	0	148	0	148	n	0.00	0	118	0	118	n	0.00	0	117	0	117	n	ENSMUSG00000024231.16	Cul2	chr18	protein_coding	cullin 2
known_NIR_8949	chr18	3431585;3434110	3433994;3434844	+	3431585	3434844	cassetteExon	ENSMUST00000025073.12	known	0.99	108.5	1	106;111	1	n	0.99	103.5	1	88;119	1	n	1.00	112.0	0	116;108	0	n	0.99	112.0	1	105;119	1	n	0.99	132.0	2	136;128	2	y	1.00	47.5	0	42;53	0	n	0.98	139.5	3	118;161	3	y	1.00	64.0	0	55;73	0	n	1.00	107.5	0	108;107	0	n	1.00	140.0	0	132;148	0	n	1.00	115.0	0	112;118	0	n	1.00	115.5	0	114;117	0	n	ENSMUSG00000024231.16	Cul2	chr18	protein_coding	cullin 2
known_NIR_8950	chr18	34434368	34437636	+	34433114	34437636	A5SS	ENSMUST00000171187.8	known	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.33	4	8	4	8	y	0.00	0	6	0	6	n	0.13	2	13	2	13	y	0.00	0	4	0	4	n	0.12	2	14	2	14	y	1.00	2	0	2	0	n	0.60	3	2	3	2	n	0.10	1	9	1	9	n	0.60	3	2	3	2	n	0.27	4	11	4	11	y	ENSMUSG00000005871.16	Apc	chr18	protein_coding	APC, WNT signaling pathway regulator
known_NIR_8951	chr18	34464312	34464803	+	34464164	34464803	A5SS	ENSMUST00000126518.8	known	1.00	54	0	54	0	n	1.00	60	0	60	0	n	1.00	104	0	104	0	n	0.99	83	1	83	1	n	0.99	78	1	78	1	n	0.99	87	1	87	1	n	1.00	82	0	82	0	n	0.98	59	1	59	1	n	1.00	48	0	48	0	n	1.00	80	0	80	0	n	1.00	66	0	66	0	n	0.95	57	3	57	3	y	ENSMUSG00000014504.17	Srp19	chr18	protein_coding	signal recognition particle 19
known_NIR_8952	chr18	34464312	34467346	+	34464312	34464803	A3SS	ENSMUST00000140279.8	known	0.05	3	54	3	54	y	0.03	2	60	2	60	y	0.12	14	104	14	104	y	0.05	4	83	4	83	y	0.08	7	78	7	78	y	0.07	7	87	7	87	y	0.10	9	82	9	82	y	0.14	10	59	10	59	y	0.08	4	48	4	48	y	0.05	4	80	4	80	y	0.01	1	66	1	66	n	0.07	4	57	4	57	y	ENSMUSG00000014504.17	Srp19	chr18	protein_coding	signal recognition particle 19
known_NIR_8953	chr18	34464312	34467346	+	34464878	34467346	A5SS&ES	ENSMUST00000126518.8	known	0.03	3	94	3	94	y	0.03	2	74	2	74	y	0.10	14	131	14	131	y	0.04	4	90	4	90	y	0.05	7	124	7	124	y	0.08	7	77	7	77	y	0.08	9	106	9	106	y	0.12	10	73	10	73	y	0.06	4	66	4	66	y	0.04	4	93	4	93	y	0.01	1	69	1	69	n	0.06	4	64	4	64	y	ENSMUSG00000014504.17	Srp19	chr18	protein_coding	signal recognition particle 19
known_NIR_8954	chr18	34464312;34464878	34464803;34467346	+	34464312	34467346	cassetteExon	ENSMUST00000131713.8	known	0.96	74.0	3	54;94	3	y	0.97	67.0	2	60;74	2	y	0.89	117.5	14	104;131	14	y	0.96	86.5	4	83;90	4	y	0.94	101.0	7	78;124	7	y	0.92	82.0	7	87;77	7	y	0.91	94.0	9	82;106	9	y	0.87	66.0	10	59;73	10	y	0.93	57.0	4	48;66	4	y	0.96	86.5	4	80;93	4	y	0.99	67.5	1	66;69	1	n	0.94	60.5	4	57;64	4	y	ENSMUSG00000014504.17	Srp19	chr18	protein_coding	signal recognition particle 19
known_NIR_8955	chr18	34464312;34464878	34464803;34467510	+	34464312;34467417	34467346;34467510	MXE	ENSMUST00000131713.8	known	0.30	27.0	63.0	54;0	3;123	n	0.31	30.0	66.0	60;0	2;130	n	0.34	52.5	100.0	104;1	14;186	n	0.43	42.5	55.5	83;2	4;107	y	0.28	39.0	98.0	78;0	7;189	n	0.40	43.5	64.0	87;0	7;121	n	0.35	43.0	81.5	82;4	9;154	y	0.35	30.0	55.5	59;1	10;101	n	0.32	24.5	53.0	48;1	4;102	n	0.37	40.5	68.5	80;1	4;133	n	0.37	33.0	56.0	66;0	1;111	n	0.35	28.5	53.5	57;0	4;103	n	ENSMUSG00000014504.17	Srp19	chr18	protein_coding	signal recognition particle 19
known_NIR_8956	chr18	34464878	34467510	+	34464878;34467417	34467346;34467510	ES	ENSMUST00000126518.8	known	0.00	0	108.5	0	94;123	n	0.00	0	102.0	0	74;130	n	0.01	1	158.5	1	131;186	n	0.02	2	98.5	2	90;107	y	0.00	0	156.5	0	124;189	n	0.00	0	99.0	0	77;121	n	0.03	4	130.0	4	106;154	y	0.01	1	87.0	1	73;101	n	0.01	1	84.0	1	66;102	n	0.01	1	113.0	1	93;133	n	0.00	0	90.0	0	69;111	n	0.00	0	83.5	0	64;103	n	ENSMUSG00000014504.17	Srp19	chr18	protein_coding	signal recognition particle 19
known_NIR_8957	chr18	34464878	34467510	+	34467417	34467510	A5SS	ENSMUST00000140279.8	known	0.00	0	123	0	123	n	0.00	0	130	0	130	n	0.01	1	186	1	186	n	0.02	2	107	2	107	y	0.00	0	189	0	189	n	0.00	0	121	0	121	n	0.03	4	154	4	154	y	0.01	1	101	1	101	n	0.01	1	102	1	102	n	0.01	1	133	1	133	n	0.00	0	111	0	111	n	0.00	0	103	0	103	n	ENSMUSG00000014504.17	Srp19	chr18	protein_coding	signal recognition particle 19
known_NIR_8958	chr18	34464878;34466115	34465959;34467346	+	34464878	34467346	cassetteExon	ENSMUST00000126518.8	known	0.00	0.0	94	0;0	94	n	0.00	0.0	74	0;0	74	n	0.00	0.0	131	0;0	131	n	0.01	0.5	90	1;0	90	n	0.00	0.0	124	0;0	124	n	0.01	0.5	77	1;0	77	n	0.03	3.5	106	3;4	106	y	0.01	1.0	73	0;2	73	n	0.00	0.0	66	0;0	66	n	0.01	1.0	93	1;1	93	n	0.00	0.0	69	0;0	69	n	0.00	0.0	64	0;0	64	n	ENSMUSG00000014504.17	Srp19	chr18	protein_coding	signal recognition particle 19
known_NIR_8959	chr18	34466115	34467346	+	34464312	34467346	A5SS	ENSMUST00000131713.8	known	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	14	0	14	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.31	4	9	4	9	y	0.17	2	10	2	10	y	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000014504.17	Srp19	chr18	protein_coding	signal recognition particle 19
known_NIR_8960	chr18	34482856	34505458	-	34482856;34490283	34490145;34505458	ES	ENSMUST00000006027.7	known	0.01	1	178.0	1	198;158	n	0.00	0	160.0	0	177;143	n	0.00	0	366.5	0	365;368	n	0.00	0	156.5	0	166;147	n	0.02	4	257.0	4	254;260	y	0.01	2	172.0	2	179;165	y	0.00	0	314.0	0	342;286	n	0.00	0	193.0	0	206;180	n	0.00	0	141.0	0	147;135	n	0.00	0	200.5	0	207;194	n	0.01	1	178.5	1	191;166	n	0.01	1	136.5	1	142;131	n	ENSMUSG00000005873.7	Reep5	chr18	protein_coding	receptor accessory protein 5
known_NIR_8961	chr18	34482856	34505458	-	34490283	34505458	3pMXE	ENSMUST00000235153.2	known	0.01	1	158	1	158	n	0.00	0	143	0	143	n	0.00	0	368	0	368	n	0.00	0	147	0	147	n	0.02	4	260	4	260	y	0.01	2	165	2	165	y	0.00	0	286	0	286	n	0.00	0	180	0	180	n	0.00	0	135	0	135	n	0.00	0	194	0	194	n	0.01	1	166	1	166	n	0.01	1	131	1	131	n	ENSMUSG00000005873.7	Reep5	chr18	protein_coding	receptor accessory protein 5
known_NIR_8962	chr18	34578668	34581421	-	34578668;34581174	34581079;34581421	ES	ENSMUST00000040506.8	known	0.21	7	26.5	7	30;23	y	0.18	7	31.5	7	43;20	y	0.32	18	37.5	18	44;31	y	0.39	16	25.0	16	23;27	y	0.29	18	44.0	18	48;40	y	0.17	5	24.5	5	26;23	y	0.22	14	48.5	14	47;50	y	0.31	11	24.5	11	25;24	y	0.38	12	19.5	12	23;16	y	0.31	18	39.5	18	40;39	y	0.41	12	17.5	12	20;15	y	0.20	9	36.5	9	45;28	y	ENSMUSG00000036501.8	Fam13b	chr18	protein_coding	family with sequence similarity 13, member B
known_NIR_8963	chr18	34583946	34584261	-	34581504	34584261	A3SS	ENSMUST00000040506.8	known	0.00	0	34	0	34	n	0.00	0	36	0	36	n	0.00	0	41	0	41	n	0.00	0	36	0	36	n	0.03	2	63	2	63	y	0.00	0	16	0	16	n	0.00	0	46	0	46	n	0.00	0	31	0	31	n	0.00	0	24	0	24	n	0.00	0	45	0	45	n	0.00	0	30	0	30	n	0.00	0	51	0	51	n	ENSMUSG00000036501.8	Fam13b	chr18	protein_coding	family with sequence similarity 13, member B
known_NIR_8964	chr18	34590927;34592475	34592410;34595114	-	34590927	34595114	cassetteExon	ENSMUST00000040506.8	known	0.00	0.0	21	0;0	21	n	0.09	2.0	20	2;2	20	y	0.01	0.5	47	0;1	47	n	0.03	1.0	30	0;2	30	n	0.01	0.5	43	1;0	43	n	0.01	0.5	35	0;1	35	n	0.01	0.5	56	1;0	56	n	0.00	0.0	33	0;0	33	n	0.00	0.0	19	0;0	19	n	0.04	2.0	44	2;2	44	y	0.04	1.0	25	1;1	25	n	0.02	1.0	40	0;2	40	n	ENSMUSG00000036501.8	Fam13b	chr18	protein_coding	family with sequence similarity 13, member B
known_NIR_8965	chr18	34624165	34627210	-	34620192	34627210	A3SS	ENSMUST00000040506.8	known	0.12	5	38	5	38	y	0.10	3	28	3	28	y	0.04	2	47	2	47	y	0.09	3	30	3	30	y	0.11	6	50	6	50	y	0.08	3	33	3	33	y	0.14	8	51	8	51	y	0.16	7	36	7	36	y	0.00	0	20	0	20	n	0.09	3	29	3	29	y	0.09	2	20	2	20	y	0.10	6	54	6	54	y	ENSMUSG00000036501.8	Fam13b	chr18	protein_coding	family with sequence similarity 13, member B
known_NIR_8966	chr18	34738741	34739728	-	34738741;34739519	34739473;34739728	ES	ENSMUST00000003876.10	known	0.03	1	34.5	1	34;35	n	0.14	3	19.0	3	19;19	y	0.24	12	39.0	12	34;44	y	0.14	5	29.5	5	32;27	y	0.23	11	37.5	11	32;43	y	0.14	2	12.5	2	12;13	y	0.15	5	27.5	5	31;24	y	0.19	5	21.0	5	19;23	y	0.06	2	29.0	2	27;31	y	0.10	2	18.5	2	17;20	y	0.08	2	22.0	2	18;26	y	0.10	4	36.5	4	34;39	y	ENSMUSG00000003778.15	Brd8	chr18	protein_coding	bromodomain containing 8
known_NIR_8967	chr18	34741108	34742858	-	34741108	34741471	A5SS	ENSMUST00000152612.8	known	0.00	0	27	0	27	n	0.08	1	12	1	12	n	0.08	2	22	2	22	y	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.00	0	17	0	17	n	0.13	3	20	3	20	y	0.13	2	13	2	13	y	0.10	2	19	2	19	y	0.06	1	15	1	15	n	0.16	3	16	3	16	y	0.05	1	18	1	18	n	ENSMUSG00000003778.15	Brd8	chr18	protein_coding	bromodomain containing 8
known_NIR_8968	chr18	34741108	34742858	-	34741108;34741680	34741471;34742858	ES	ENSMUST00000003876.10	known	0.00	0	22.5	0	27;18	n	0.08	1	11.0	1	12;10	n	0.10	2	17.5	2	22;13	y	0.00	0	19.0	0	14;24	n	0.00	0	13.0	0	16;10	n	0.00	0	15.0	0	17;13	n	0.16	3	15.5	3	20;11	y	0.15	2	11.0	2	13;9	y	0.12	2	15.0	2	19;11	y	0.07	1	14.0	1	15;13	n	0.20	3	12.0	3	16;8	y	0.06	1	15.0	1	18;12	n	ENSMUSG00000003778.15	Brd8	chr18	protein_coding	bromodomain containing 8
known_NIR_8969	chr18	34743002	34744185	-	34743002;34743681	34743463;34744185	ES	ENSMUST00000003876.10	known	0.21	4	15.0	4	17;13	y	0.31	2	4.5	2	4;5	y	0.25	7	21.5	7	19;24	y	0.16	3	15.5	3	16;15	y	0.23	5	17.0	5	18;16	y	0.12	2	14.5	2	10;19	y	0.18	4	18.5	4	16;21	y	0.32	7	15.0	7	13;17	y	0.37	7	12.0	7	14;10	y	0.33	7	14.5	7	17;12	y	0.12	2	14.5	2	14;15	y	0.23	5	17.0	5	21;13	y	ENSMUSG00000003778.15	Brd8	chr18	protein_coding	bromodomain containing 8
known_NIR_8970	chr18	34892650	34895548	+	34892197	34895548	A5SS	ENSMUST00000049281.12	known	0.67	2	1	2	1	n	1.00	9	0	9	0	n	0.94	16	1	16	1	n	1.00	10	0	10	0	n	1.00	17	0	17	0	n	1.00	6	0	6	0	n	0.83	10	2	10	2	y	1.00	14	0	14	0	n	1.00	9	0	9	0	n	0.85	17	3	17	3	y	1.00	6	0	6	0	n	0.83	10	2	10	2	y	ENSMUSG00000034300.18	Fam53c	chr18	protein_coding	family with sequence similarity 53, member C
known_NIR_8971	chr18	34928833	34932338	+	34928833;34929965	34929841;34932338	ES	ENSMUST00000043775.9	known	0.07	1	13.0	1	13;13	n	0.00	0	7.0	0	5;9	n	0.00	0	17.5	0	19;16	n	0.12	3	21.5	3	19;24	y	0.08	2	22.0	2	17;27	y	0.00	0	7.5	0	10;5	n	0.00	0	14.5	0	17;12	n	0.00	0	14.0	0	18;10	n	0.00	0	12.0	0	13;11	n	0.07	1	13.0	1	9;17	n	0.00	0	10.0	0	10;10	n	0.00	0	19.5	0	17;22	n	ENSMUSG00000038773.12	Kdm3b	chr18	protein_coding	KDM3B lysine (K)-specific demethylase 3B
known_NIR_8972	chr18	34932412	34936503	+	34932412	34941294	A3SS	ENSMUST00000225195.2	known	0.92	11	1	11	1	n	0.93	13	1	13	1	n	0.68	13	6	13	6	y	0.89	17	2	17	2	y	0.86	24	4	24	4	y	0.83	5	1	5	1	n	0.71	15	6	15	6	y	1.00	11	0	11	0	n	0.44	7	9	7	9	y	0.86	19	3	19	3	y	0.90	9	1	9	1	n	0.89	8	1	8	1	n	ENSMUSG00000038773.12	Kdm3b	chr18	protein_coding	KDM3B lysine (K)-specific demethylase 3B
known_NIR_8973	chr18	34932412	34941294	+	34932412;34937102	34936503;34941294	ES	ENSMUST00000043775.9	known	0.10	1	9.0	1	11;7	n	0.12	1	7.5	1	13;2	n	0.33	6	12.0	6	13;11	y	0.13	2	13.0	2	17;9	y	0.18	4	18.5	4	24;13	y	0.13	1	6.5	1	5;8	n	0.32	6	12.5	6	15;10	y	0.00	0	9.0	0	11;7	n	0.51	9	8.5	9	7;10	y	0.13	3	20.0	3	19;21	y	0.11	1	8.0	1	9;7	n	0.08	1	11.5	1	8;15	n	ENSMUSG00000038773.12	Kdm3b	chr18	protein_coding	KDM3B lysine (K)-specific demethylase 3B
known_NIR_8974	chr18	34937102	34941294	+	34932412	34941294	A5SS	ENSMUST00000225195.2	known	0.88	7	1	7	1	n	0.67	2	1	2	1	n	0.65	11	6	11	6	y	0.82	9	2	9	2	y	0.76	13	4	13	4	y	0.89	8	1	8	1	n	0.62	10	6	10	6	y	1.00	7	0	7	0	n	0.53	10	9	10	9	y	0.88	21	3	21	3	y	0.88	7	1	7	1	n	0.94	15	1	15	1	n	ENSMUSG00000038773.12	Kdm3b	chr18	protein_coding	KDM3B lysine (K)-specific demethylase 3B
known_NIR_8975	chr18	35252543	35285654	+	35252034	35285654	A5SS	ENSMUST00000042345.8	known	0.03	2	65	2	65	y	0.00	0	30	0	30	n	0.00	0	102	0	102	n	0.01	1	105	1	105	n	0.00	0	98	0	98	n	0.03	1	31	1	31	n	0.01	1	84	1	84	n	0.00	0	51	0	51	n	0.00	0	66	0	66	n	0.02	2	96	2	96	y	0.00	0	55	0	55	n	0.00	0	76	0	76	n	ENSMUSG00000037815.8	Ctnna1	chr18	protein_coding	catenin (cadherin associated protein), alpha 1
known_NIR_8976	chr18	35399962	35402143	-	35399962	35402092	A5SS	ENSMUST00000236387.2	known	0.00	1	212	1	212	n	0.01	2	252	2	252	y	0.00	0	209	0	209	n	0.00	0	190	0	190	n	0.01	2	273	2	273	y	0.00	0	144	0	144	n	0.00	0	227	0	227	n	0.00	0	147	0	147	n	0.01	1	171	1	171	n	0.00	0	253	0	253	n	0.02	5	218	5	218	y	0.00	1	233	1	233	n	ENSMUSG00000024357.11	Sil1	chr18	protein_coding	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)
known_NIR_8977	chr18	35458528	35474151	-	35458528;35461359	35461256;35474151	ES	ENSMUST00000236387.2	known	1.00	234	0.0	234	0;0	n	0.98	196	4.5	196	0;9	n	1.00	251	0.0	251	0;0	n	1.00	247	0.0	247	0;0	n	1.00	322	0.5	322	1;0	n	1.00	157	0.0	157	0;0	n	0.98	294	7.5	294	2;13	y	1.00	170	0.0	170	0;0	n	0.99	217	2.5	217	0;5	n	0.99	290	4.0	290	0;8	n	0.98	266	5.5	266	0;11	n	0.98	265	4.5	265	0;9	n	ENSMUSG00000024357.11	Sil1	chr18	protein_coding	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)
known_NIR_8978	chr18	35551248	35631844	-	35551248	35571320	A5SS&ES	ENSMUST00000237232.2	known	0.00	0	184	0	184	n	0.01	2	152	2	152	y	0.00	0	203	0	203	n	0.01	2	241	2	241	y	0.00	0	314	0	314	n	0.00	0	158	0	158	n	0.00	1	266	1	266	n	0.02	4	179	4	179	y	0.00	1	206	1	206	n	0.01	2	272	2	272	y	0.00	0	244	0	244	n	0.00	0	250	0	250	n	ENSMUSG00000024357.11	Sil1	chr18	protein_coding	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)
known_NIR_8979	chr18	35551248	35631844	-	35571433	35631844	A3SS&ES	ENSMUST00000235619.2	known	0.00	0	175	0	175	n	0.02	2	130	2	130	y	0.00	0	203	0	203	n	0.01	2	190	2	190	y	0.00	0	279	0	279	n	0.00	0	133	0	133	n	0.01	1	185	1	185	n	0.02	4	165	4	165	y	0.01	1	162	1	162	n	0.01	2	232	2	232	y	0.00	0	179	0	179	n	0.00	0	189	0	189	n	ENSMUSG00000024357.11	Sil1	chr18	protein_coding	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)
known_NIR_8980	chr18	35551248;35571433	35571320;35631844	-	35551248	35631844	cassetteExon	ENSMUST00000237896.2	known	1.00	179.5	0	184;175	0	n	0.99	141.0	2	152;130	2	y	1.00	203.0	0	203;203	0	n	0.99	215.5	2	241;190	2	y	1.00	296.5	0	314;279	0	n	1.00	145.5	0	158;133	0	n	1.00	225.5	1	266;185	1	n	0.98	172.0	4	179;165	4	y	0.99	184.0	1	206;162	1	n	0.99	252.0	2	272;232	2	y	1.00	211.5	0	244;179	0	n	1.00	219.5	0	250;189	0	n	ENSMUSG00000024357.11	Sil1	chr18	protein_coding	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)
known_NIR_8981	chr18	35563360	35571320	-	35551248	35571320	A3SS	ENSMUST00000025215.10	known	0.01	1	184	1	184	n	0.01	2	152	2	152	y	0.00	1	203	1	203	n	0.00	0	241	0	241	n	0.01	2	314	2	314	y	0.01	1	158	1	158	n	0.00	1	266	1	266	n	0.01	2	179	2	179	y	0.01	2	206	2	206	y	0.01	3	272	3	272	y	0.00	1	244	1	244	n	0.00	0	250	0	250	n	ENSMUSG00000024357.11	Sil1	chr18	protein_coding	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)
known_NIR_8982	chr18	35563360	35571320	-	35563360;35565604	35565517;35571320	ES	ENSMUST00000236007.2	known	1.00	1	0.0	1	0;0	n	0.57	2	1.5	2	1;2	n	0.18	1	4.5	1	7;2	n	0.00	0	1.0	0	1;1	n	0.57	2	1.5	2	2;1	n	0.33	1	2.0	1	1;3	n	0.33	1	2.0	1	3;1	n	0.67	2	1.0	2	1;1	n	0.40	2	3.0	2	2;4	n	0.46	3	3.5	3	2;5	y	0.67	1	0.5	1	0;1	n	0.00	0	4.5	0	2;7	n	ENSMUSG00000024357.11	Sil1	chr18	protein_coding	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)
known_NIR_8983	chr18	35565604	35571320	-	35551248	35571320	A3SS	ENSMUST00000025215.10	known	0.00	0	184	0	184	n	0.01	2	152	2	152	y	0.01	2	203	2	203	y	0.00	1	241	1	241	n	0.00	1	314	1	314	n	0.02	3	158	3	158	y	0.00	1	266	1	266	n	0.01	1	179	1	179	n	0.02	4	206	4	206	y	0.02	5	272	5	272	y	0.00	1	244	1	244	n	0.03	7	250	7	250	y	ENSMUSG00000024357.11	Sil1	chr18	protein_coding	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)
known_NIR_8984	chr18	35571433;35626286	35625912;35631844	-	35571433	35631844	cassetteExon	ENSMUST00000235619.2	known	0.03	6.0	175	3;9	175	y	0.04	5.0	130	4;6	130	y	0.02	4.0	203	4;4	203	y	0.03	6.0	190	8;4	190	y	0.01	2.0	279	1;3	279	n	0.01	2.0	133	0;4	133	n	0.01	2.5	185	3;2	185	y	0.02	3.0	165	3;3	165	y	0.01	2.0	162	0;4	162	n	0.01	2.5	232	2;3	232	y	0.02	3.0	179	5;1	179	n	0.02	3.5	189	3;4	189	y	ENSMUSG00000024357.11	Sil1	chr18	protein_coding	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)
known_NIR_8985	chr18	35695312	35704896	+	35695345	35704896	A5SS	ENSMUST00000235769.2	known	0.17	4	20	4	20	y	0.00	0	5	0	5	n	0.03	2	56	2	56	y	0.05	1	19	1	19	n	0.09	3	31	3	31	y	0.00	0	12	0	12	n	0.00	0	24	0	24	n	0.00	0	20	0	20	n	0.00	0	9	0	9	n	0.05	1	18	1	18	n	0.00	0	20	0	20	n	0.00	0	19	0	19	n	ENSMUSG00000037236.17	Matr3	chr18	protein_coding	matrin 3
known_NIR_8986	chr18	35695312	35710611	+	35705988	35710611	A5SS&ES	ENSMUST00000235769.2	known	0.00	0	24	0	24	n	0.00	0	36	0	36	n	0.00	0	72	0	72	n	0.00	0	67	0	67	n	0.00	0	62	0	62	n	0.00	0	20	0	20	n	0.00	0	42	0	42	n	0.00	0	33	0	33	n	0.00	0	53	0	53	n	0.03	2	65	2	65	y	0.00	0	34	0	34	n	0.00	0	54	0	54	n	ENSMUSG00000037236.17	Matr3	chr18	protein_coding	matrin 3
known_NIR_8987	chr18	35695345	35704896	+	35690422	35704896	A5SS	ENSMUST00000235176.2	known	1.00	20	0	20	0	n	1.00	5	0	5	0	n	0.95	56	3	56	3	y	1.00	19	0	19	0	n	1.00	31	0	31	0	n	1.00	12	0	12	0	n	1.00	24	0	24	0	n	1.00	20	0	20	0	n	0.82	9	2	9	2	y	0.95	18	1	18	1	n	1.00	20	0	20	0	n	1.00	19	0	19	0	n	ENSMUSG00000117694.2	Snhg4	chr18	protein_coding	small nucleolar RNA host gene 4
known_NIR_8988	chr18	35695345	35704896	+	35690444	35704896	A5SS	ENSMUST00000237230.2	known	1.00	20	0	20	0	n	1.00	5	0	5	0	n	1.00	56	0	56	0	n	0.90	19	2	19	2	y	1.00	31	0	31	0	n	0.86	12	2	12	2	y	1.00	24	0	24	0	n	1.00	20	0	20	0	n	1.00	9	0	9	0	n	1.00	18	0	18	0	n	0.87	20	3	20	3	y	1.00	19	0	19	0	n	ENSMUSG00000117694.2	Snhg4	chr18	protein_coding	small nucleolar RNA host gene 4
known_NIR_8989	chr18	35695345	35704896	+	35695345	35710611	A3SS	ENSMUST00000237018.2	known	1.00	20	0	20	0	n	0.50	5	5	5	5	y	0.88	56	8	56	8	y	0.73	19	7	19	7	y	0.76	31	10	31	10	y	0.67	12	6	12	6	y	0.67	24	12	24	12	y	0.77	20	6	20	6	y	0.47	9	10	9	10	y	0.64	18	10	18	10	y	0.87	20	3	20	3	y	0.68	19	9	19	9	y	ENSMUSG00000037236.17	Matr3	chr18	protein_coding	matrin 3
known_NIR_8990	chr18	35695345	35710611	+	35690422	35710611	A5SS	ENSMUST00000237592.2	known	-	-	-	-	-	-	0.83	5	1	5	1	n	0.80	8	2	8	2	y	0.78	7	2	7	2	n	0.91	10	1	10	1	n	1.00	6	0	6	0	n	1.00	12	0	12	0	n	1.00	6	0	6	0	n	0.91	10	1	10	1	n	1.00	10	0	10	0	n	1.00	3	0	3	0	n	1.00	9	0	9	0	n	ENSMUSG00000117694.2	Snhg4	chr18	protein_coding	small nucleolar RNA host gene 4
known_NIR_8991	chr18	35695345	35710611	+	35690444	35710611	A5SS	ENSMUST00000235801.2	known	-	-	-	-	-	-	1.00	5	0	5	0	n	0.80	8	2	8	2	y	1.00	7	0	7	0	n	1.00	10	0	10	0	n	1.00	6	0	6	0	n	1.00	12	0	12	0	n	1.00	6	0	6	0	n	1.00	10	0	10	0	n	1.00	10	0	10	0	n	1.00	3	0	3	0	n	1.00	9	0	9	0	n	ENSMUSG00000117694.2	Snhg4	chr18	protein_coding	small nucleolar RNA host gene 4
known_NIR_8992	chr18	35695345	35710611	+	35695312	35710611	A5SS	ENSMUST00000236507.2	known	-	-	-	-	-	-	1.00	5	0	5	0	n	1.00	8	0	8	0	n	1.00	7	0	7	0	n	1.00	10	0	10	0	n	1.00	6	0	6	0	n	1.00	12	0	12	0	n	1.00	6	0	6	0	n	1.00	10	0	10	0	n	0.83	10	2	10	2	y	1.00	3	0	3	0	n	1.00	9	0	9	0	n	ENSMUSG00000037236.17	Matr3	chr18	protein_coding	matrin 3
known_NIR_8993	chr18	35695345	35710611	+	35695345;35705988	35704896;35710611	ES	ENSMUST00000235769.2	known	0.00	0	22.0	0	20;24	n	0.20	5	20.5	5	5;36	y	0.11	8	64.0	8	56;72	y	0.14	7	43.0	7	19;67	y	0.18	10	46.5	10	31;62	y	0.27	6	16.0	6	12;20	y	0.27	12	33.0	12	24;42	y	0.18	6	26.5	6	20;33	y	0.24	10	31.0	10	9;53	y	0.19	10	41.5	10	18;65	y	0.10	3	27.0	3	20;34	y	0.20	9	36.5	9	19;54	y	ENSMUSG00000037236.17	Matr3	chr18	protein_coding	matrin 3
known_NIR_8994	chr18	35695574	35710611	+	35695345	35710611	A5SS	ENSMUST00000237018.2	known	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.14	2	12	2	12	y	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.10	1	9	1	9	n	ENSMUSG00000037236.17	Matr3	chr18	protein_coding	matrin 3
known_NIR_8995	chr18	35695574	35710611	+	35705988	35710611	A5SS&ES	ENSMUST00000235769.2	known	0.00	0	24	0	24	n	0.00	0	36	0	36	n	0.00	0	72	0	72	n	0.00	0	67	0	67	n	0.00	0	62	0	62	n	0.00	0	20	0	20	n	0.05	2	42	2	42	y	0.00	0	33	0	33	n	0.00	0	53	0	53	n	0.00	0	65	0	65	n	0.00	0	34	0	34	n	0.02	1	54	1	54	n	ENSMUSG00000037236.17	Matr3	chr18	protein_coding	matrin 3
known_NIR_8996	chr18	35695907	35704896	+	35695345	35704896	A5SS	ENSMUST00000235769.2	known	0.00	0	20	0	20	n	0.00	0	5	0	5	n	0.00	0	56	0	56	n	0.05	1	19	1	19	n	0.00	0	31	0	31	n	0.00	0	12	0	12	n	0.00	0	24	0	24	n	0.00	0	20	0	20	n	0.18	2	9	2	9	y	0.00	0	18	0	18	n	0.00	0	20	0	20	n	0.00	0	19	0	19	n	ENSMUSG00000037236.17	Matr3	chr18	protein_coding	matrin 3
known_NIR_8997	chr18	35696153	35704896	+	35695345	35704896	A5SS	ENSMUST00000235769.2	known	0.05	1	20	1	20	n	0.00	0	5	0	5	n	0.00	0	56	0	56	n	0.00	0	19	0	19	n	0.00	0	31	0	31	n	0.00	0	12	0	12	n	0.00	0	24	0	24	n	0.09	2	20	2	20	y	0.00	0	9	0	9	n	0.00	0	18	0	18	n	0.00	0	20	0	20	n	0.00	0	19	0	19	n	ENSMUSG00000037236.17	Matr3	chr18	protein_coding	matrin 3
known_NIR_8998	chr18	35705988	35710611	+	35690422	35710611	A5SS	ENSMUST00000237592.2	known	1.00	24	0	24	0	n	0.97	36	1	36	1	n	0.97	72	2	72	2	y	0.97	67	2	67	2	y	0.98	62	1	62	1	n	1.00	20	0	20	0	n	1.00	42	0	42	0	n	1.00	33	0	33	0	n	0.98	53	1	53	1	n	1.00	65	0	65	0	n	1.00	34	0	34	0	n	1.00	54	0	54	0	n	ENSMUSG00000117694.2	Snhg4	chr18	protein_coding	small nucleolar RNA host gene 4
known_NIR_8999	chr18	35705988	35710611	+	35690444	35710611	A5SS	ENSMUST00000235801.2	known	1.00	24	0	24	0	n	1.00	36	0	36	0	n	0.97	72	2	72	2	y	1.00	67	0	67	0	n	1.00	62	0	62	0	n	1.00	20	0	20	0	n	1.00	42	0	42	0	n	1.00	33	0	33	0	n	1.00	53	0	53	0	n	1.00	65	0	65	0	n	1.00	34	0	34	0	n	1.00	54	0	54	0	n	ENSMUSG00000117694.2	Snhg4	chr18	protein_coding	small nucleolar RNA host gene 4
known_NIR_9000	chr18	35705988	35710611	+	35695345	35710611	A5SS	ENSMUST00000237018.2	known	1.00	24	0	24	0	n	0.88	36	5	36	5	y	0.90	72	8	72	8	y	0.91	67	7	67	7	y	0.86	62	10	62	10	y	0.77	20	6	20	6	y	0.78	42	12	42	12	y	0.85	33	6	33	6	y	0.84	53	10	53	10	y	0.87	65	10	65	10	y	0.92	34	3	34	3	y	0.86	54	9	54	9	y	ENSMUSG00000037236.17	Matr3	chr18	protein_coding	matrin 3
known_NIR_9001	chr18	35712363	35714223	+	35712371	35714223	A5SS	ENSMUST00000237592.2	known	0.03	2	56	2	56	y	0.05	2	42	2	42	y	0.01	1	98	1	98	n	0.01	1	91	1	91	n	0.04	3	72	3	72	y	0.00	0	50	0	50	n	0.01	1	66	1	66	n	0.00	0	52	0	52	n	0.03	2	60	2	60	y	0.00	0	76	0	76	n	0.00	0	64	0	64	n	0.02	2	100	2	100	y	ENSMUSG00000117694.2	Snhg4	chr18	protein_coding	small nucleolar RNA host gene 4
known_NIR_9002	chr18	35731812	35743924	+	35733170	35743924	5pMXE	ENSMUST00000236414.2	known	0.99	212	3	212	3	y	0.99	171	2	171	2	y	0.99	220	3	220	3	y	0.99	269	4	269	4	y	0.99	300	3	300	3	y	0.99	143	2	143	2	y	0.98	278	5	278	5	y	0.99	162	1	162	1	n	0.98	211	4	211	4	y	0.98	303	5	303	5	y	1.00	242	1	242	1	n	0.99	237	3	237	3	y	ENSMUSG00000037058.17	Paip2	chr18	protein_coding	polyadenylate-binding protein-interacting protein 2
known_NIR_9003	chr18	35731812	35743924	+	35741872	35743924	5pMXE	ENSMUST00000235211.2	known	0.91	212	21	212	21	y	0.95	171	9	171	9	y	0.94	220	14	220	14	y	0.91	269	28	269	28	y	0.93	300	22	300	22	y	0.97	143	4	143	4	y	0.95	278	16	278	16	y	0.95	162	8	162	8	y	0.95	211	12	211	12	y	0.93	303	23	303	23	y	0.92	242	20	242	20	y	0.92	237	22	237	22	y	ENSMUSG00000037058.17	Paip2	chr18	protein_coding	polyadenylate-binding protein-interacting protein 2
known_NIR_9004	chr18	35731812;35733170	35733098;35741791	+	35731812	35741791	cassetteExon	ENSMUST00000235400.2	known	0.00	0.0	9	0;0	9	n	0.44	4.0	5	6;2	5	y	0.20	1.5	6	2;1	6	n	0.03	0.5	15	1;0	15	n	0.12	1.5	11	3;0	11	n	0.00	0.0	2	0;0	2	n	0.24	2.5	8	4;1	8	n	0.75	3.0	1	4;2	1	n	0.14	0.5	3	1;0	3	n	0.33	2.0	4	2;2	4	n	0.07	0.5	7	0;1	7	n	0.14	2.0	12	4;0	12	n	ENSMUSG00000037058.17	Paip2	chr18	protein_coding	polyadenylate-binding protein-interacting protein 2
known_NIR_9005	chr18	35731812;35733170	35733098;35743924	+	35731812	35743924	cassetteExon	ENSMUST00000041314.17	known	0.01	1.5	212	0;3	212	n	0.02	4.0	171	6;2	171	y	0.01	2.5	220	2;3	220	y	0.01	2.5	269	1;4	269	n	0.01	3.0	300	3;3	300	y	0.01	1.0	143	0;2	143	n	0.02	4.5	278	4;5	278	y	0.02	2.5	162	4;1	162	n	0.01	2.5	211	1;4	211	n	0.01	3.5	303	2;5	303	y	0.00	0.5	242	0;1	242	n	0.01	3.5	237	4;3	237	y	ENSMUSG00000037058.17	Paip2	chr18	protein_coding	polyadenylate-binding protein-interacting protein 2
known_NIR_9006	chr18	35731812;35733170	35733098;35743924	+	35731812;35742726	35742646;35743924	MXE	ENSMUST00000236666.2	known	0.43	1.5	2.0	0;3	1;3	n	0.80	4.0	1.0	6;2	0;2	n	0.71	2.5	1.0	2;3	2;0	n	0.31	2.5	5.5	1;4	5;6	n	0.67	3.0	1.5	3;3	1;2	n	1.00	1.0	0.0	0;2	0;0	n	0.64	4.5	2.5	4;5	3;2	y	1.00	2.5	0.0	4;1	0;0	n	1.00	2.5	0.0	1;4	0;0	n	0.78	3.5	1.0	2;5	1;1	n	0.17	0.5	2.5	0;1	0;5	n	0.88	3.5	0.5	4;3	1;0	n	ENSMUSG00000037058.17	Paip2	chr18	protein_coding	polyadenylate-binding protein-interacting protein 2
known_NIR_9007	chr18	35731812;35741872	35741791;35743924	+	35731812	35743924	cassetteExon	ENSMUST00000041314.17	known	0.07	15.0	212	9;21	212	y	0.04	7.0	171	5;9	171	y	0.04	10.0	220	6;14	220	y	0.07	21.5	269	15;28	269	y	0.05	16.5	300	11;22	300	y	0.02	3.0	143	2;4	143	y	0.04	12.0	278	8;16	278	y	0.03	4.5	162	1;8	162	n	0.03	7.5	211	3;12	211	y	0.04	13.5	303	4;23	303	y	0.05	13.5	242	7;20	242	y	0.07	17.0	237	12;22	237	y	ENSMUSG00000037058.17	Paip2	chr18	protein_coding	polyadenylate-binding protein-interacting protein 2
known_NIR_9008	chr18	35731812;35741872	35741791;35743924	+	35731812;35733170	35733098;35743924	MXE	ENSMUST00000236020.2	known	0.91	15.0	1.5	9;21	0;3	n	0.64	7.0	4.0	5;9	6;2	y	0.80	10.0	2.5	6;14	2;3	y	0.90	21.5	2.5	15;28	1;4	n	0.85	16.5	3.0	11;22	3;3	y	0.75	3.0	1.0	2;4	0;2	n	0.73	12.0	4.5	8;16	4;5	y	0.64	4.5	2.5	1;8	4;1	n	0.75	7.5	2.5	3;12	1;4	n	0.79	13.5	3.5	4;23	2;5	y	0.96	13.5	0.5	7;20	0;1	n	0.83	17.0	3.5	12;22	4;3	y	ENSMUSG00000037058.17	Paip2	chr18	protein_coding	polyadenylate-binding protein-interacting protein 2
known_NIR_9009	chr18	35731812;35741872	35741791;35743924	+	35731812;35742726	35742646;35743924	MXE	ENSMUST00000236666.2	known	0.88	15.0	2.0	9;21	1;3	n	0.88	7.0	1.0	5;9	0;2	n	0.91	10.0	1.0	6;14	2;0	n	0.80	21.5	5.5	15;28	5;6	y	0.92	16.5	1.5	11;22	1;2	n	1.00	3.0	0.0	2;4	0;0	n	0.83	12.0	2.5	8;16	3;2	y	1.00	4.5	0.0	1;8	0;0	n	1.00	7.5	0.0	3;12	0;0	n	0.93	13.5	1.0	4;23	1;1	n	0.84	13.5	2.5	7;20	0;5	n	0.97	17.0	0.5	12;22	1;0	n	ENSMUSG00000037058.17	Paip2	chr18	protein_coding	polyadenylate-binding protein-interacting protein 2
known_NIR_9010	chr18	35731812;35742726	35742646;35743924	+	35731812	35743924	cassetteExon	ENSMUST00000041314.17	known	0.01	2.0	212	1;3	212	n	0.01	1.0	171	0;2	171	n	0.00	1.0	220	2;0	220	n	0.02	5.5	269	5;6	269	y	0.00	1.5	300	1;2	300	n	0.00	0.0	143	0;0	143	n	0.01	2.5	278	3;2	278	y	0.00	0.0	162	0;0	162	n	0.00	0.0	211	0;0	211	n	0.00	1.0	303	1;1	303	n	0.01	2.5	242	0;5	242	n	0.00	0.5	237	1;0	237	n	ENSMUSG00000037058.17	Paip2	chr18	protein_coding	polyadenylate-binding protein-interacting protein 2
known_NIR_9011	chr18	35731896	35743924	+	35731812	35743924	A5SS	ENSMUST00000041314.17	known	0.00	0	212	0	212	n	0.01	1	171	1	171	n	0.00	1	220	1	220	n	0.00	0	269	0	269	n	0.01	2	300	2	300	y	0.03	4	143	4	143	y	0.01	2	278	2	278	y	0.01	2	162	2	162	y	0.01	3	211	3	211	y	0.00	0	303	0	303	n	0.00	0	242	0	242	n	0.01	3	237	3	237	y	ENSMUSG00000037058.17	Paip2	chr18	protein_coding	polyadenylate-binding protein-interacting protein 2
known_NIR_9012	chr18	35731896	35743924	+	35741872	35743924	A5SS&ES	ENSMUST00000235400.2	known	0.00	0	21	0	21	n	0.10	1	9	1	9	n	0.07	1	14	1	14	n	0.00	0	28	0	28	n	0.08	2	22	2	22	y	0.50	4	4	4	4	n	0.11	2	16	2	16	y	0.20	2	8	2	8	y	0.20	3	12	3	12	y	0.00	0	23	0	23	n	0.00	0	20	0	20	n	0.12	3	22	3	22	y	ENSMUSG00000037058.17	Paip2	chr18	protein_coding	polyadenylate-binding protein-interacting protein 2
known_NIR_9013	chr18	35733170	35743924	+	35741872	35743924	5pMXE	ENSMUST00000235211.2	known	0.12	3	21	3	21	y	0.18	2	9	2	9	y	0.18	3	14	3	14	y	0.12	4	28	4	28	y	0.12	3	22	3	22	y	0.33	2	4	2	4	n	0.24	5	16	5	16	y	0.11	1	8	1	8	n	0.25	4	12	4	12	y	0.18	5	23	5	23	y	0.05	1	20	1	20	n	0.12	3	22	3	22	y	ENSMUSG00000037058.17	Paip2	chr18	protein_coding	polyadenylate-binding protein-interacting protein 2
known_NIR_9014	chr18	35733170;35741872	35741791;35743924	+	35733170	35743924	cassetteExon	ENSMUST00000236020.2	known	0.78	10.5	3	0;21	3	n	0.73	5.5	2	2;9	2	y	0.71	7.5	3	1;14	3	n	0.78	14.0	4	0;28	4	n	0.79	11.0	3	0;22	3	n	0.50	2.0	2	0;4	2	n	0.63	8.5	5	1;16	5	n	0.83	5.0	1	2;8	1	n	0.60	6.0	4	0;12	4	n	0.71	12.5	5	2;23	5	y	0.91	10.5	1	1;20	1	n	0.79	11.0	3	0;22	3	n	ENSMUSG00000037058.17	Paip2	chr18	protein_coding	polyadenylate-binding protein-interacting protein 2
known_NIR_9015	chr18	35742726	35743924	+	35733170	35743924	A5SS	ENSMUST00000236414.2	known	0.50	3	3	3	3	n	0.50	2	2	2	2	n	0.00	0	3	0	3	n	0.60	6	4	6	4	y	0.40	2	3	2	3	n	0.00	0	2	0	2	n	0.29	2	5	2	5	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.83	5	1	5	1	n	0.00	0	3	0	3	n	ENSMUSG00000037058.17	Paip2	chr18	protein_coding	polyadenylate-binding protein-interacting protein 2
known_NIR_9016	chr18	35742726	35743924	+	35741872	35743924	A5SS	ENSMUST00000235210.2	known	0.12	3	21	3	21	y	0.18	2	9	2	9	y	0.00	0	14	0	14	n	0.18	6	28	6	28	y	0.08	2	22	2	22	y	0.00	0	4	0	4	n	0.11	2	16	2	16	y	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.04	1	23	1	23	n	0.20	5	20	5	20	y	0.00	0	22	0	22	n	ENSMUSG00000037058.17	Paip2	chr18	protein_coding	polyadenylate-binding protein-interacting protein 2
known_NIR_9017	chr18	35753285	35754820	-	35752705	35754820	A3SS	ENSMUST00000025212.8	known	0.00	0	121	0	121	n	0.00	0	112	0	112	n	0.02	3	123	3	123	y	0.00	0	128	0	128	n	0.00	0	218	0	218	n	0.00	0	96	0	96	n	0.01	1	145	1	145	n	0.00	0	93	0	93	n	0.00	0	126	0	126	n	0.00	0	137	0	137	n	0.00	0	113	0	113	n	0.01	1	113	1	113	n	ENSMUSG00000024354.14	Slc23a1	chr18	protein_coding	solute carrier family 23 (nucleobase transporters), member 1
known_NIR_9018	chr18	35759527	35760155	-	35759546	35760155	A3SS	ENSMUST00000025212.8	known	0.06	4	61	4	61	y	0.08	3	36	3	36	y	0.08	6	67	6	67	y	0.11	10	81	10	81	y	0.00	0	120	0	120	n	0.00	0	48	0	48	n	0.05	4	81	4	81	y	0.00	0	54	0	54	n	0.00	0	52	0	52	n	0.00	0	73	0	73	n	0.02	1	42	1	42	n	0.10	5	43	5	43	y	ENSMUSG00000024354.14	Slc23a1	chr18	protein_coding	solute carrier family 23 (nucleobase transporters), member 1
known_NIR_9019	chr18	35793627	35795065	-	35793627	35793845	5pMXE	ENSMUST00000236539.2	known	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	20	0	20	n	0.00	0	6	0	6	n	0.00	0	25	0	25	n	0.13	2	13	2	13	y	0.04	1	27	1	27	n	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.09	2	20	2	20	y	0.00	0	9	0	9	n	0.00	0	13	0	13	n	ENSMUSG00000024352.13	Spata24	chr18	protein_coding	spermatogenesis associated 24
known_NIR_9020	chr18	35793627	35795065	-	35793627;35793910	35793845;35795065	ES	ENSMUST00000235292.2	known	0.00	0	9.5	0	10;9	n	0.00	0	8.0	0	10;6	n	0.00	0	18.5	0	20;17	n	0.00	0	8.0	0	6;10	n	0.00	0	24.5	0	25;24	n	0.11	2	16.5	2	13;20	y	0.04	1	24.5	1	27;22	n	0.00	0	14.0	0	15;13	n	0.00	0	8.0	0	7;9	n	0.10	2	17.5	2	20;15	y	0.00	0	9.5	0	9;10	n	0.00	0	11.5	0	13;10	n	ENSMUSG00000117874.2	Gm50318	chr18	protein_coding	predicted gene, 50318
known_NIR_9021	chr18	35834043;35835558	35835465;35836079	-	35834043	35836079	cassetteExon	ENSMUST00000025208.7	known	0.11	1.0	8	1;1	8	n	0.31	4.5	10	7;2	10	y	0.62	11.5	7	13;10	7	y	0.11	1.5	12	3;0	12	n	0.40	8.0	12	10;6	12	y	0.65	5.5	3	6;5	3	y	0.24	5.0	16	6;4	16	y	0.31	5.0	11	6;4	11	y	0.20	3.0	12	1;5	12	n	0.50	8.0	8	12;4	8	y	0.18	1.5	7	2;1	7	n	0.29	4.5	11	6;3	11	y	ENSMUSG00000024350.7	Dnajc18	chr18	protein_coding	DnaJ heat shock protein family (Hsp40) member C18
known_NIR_9022	chr18	35834043;35835648	35835465;35836079	-	35834043	35836079	cassetteExon	ENSMUST00000025208.7	known	0.16	1.5	8	1;2	8	n	0.29	4.0	10	7;1	10	n	0.55	8.5	7	13;4	7	y	0.11	1.5	12	3;0	12	n	0.31	5.5	12	10;1	12	n	0.57	4.0	3	6;2	3	y	0.20	4.0	16	6;2	16	y	0.24	3.5	11	6;1	11	n	0.14	2.0	12	1;3	12	n	0.43	6.0	8	12;0	8	n	0.26	2.5	7	2;3	7	y	0.21	3.0	11	6;0	11	n	ENSMUSG00000024350.7	Dnajc18	chr18	protein_coding	DnaJ heat shock protein family (Hsp40) member C18
known_NIR_9023	chr18	35835648	35836079	-	35835558	35836079	A3SS	ENSMUST00000237995.2	known	0.67	2	1	2	1	n	0.33	1	2	1	2	n	0.29	4	10	4	10	y	-	-	-	-	-	-	0.14	1	6	1	6	n	0.29	2	5	2	5	n	0.33	2	4	2	4	n	0.20	1	4	1	4	n	0.38	3	5	3	5	n	0.00	0	4	0	4	n	0.75	3	1	3	1	n	0.00	0	3	0	3	n	ENSMUSG00000024350.7	Dnajc18	chr18	protein_coding	DnaJ heat shock protein family (Hsp40) member C18
known_NIR_9024	chr18	35846487	35848232	-	35846487;35846790	35846694;35848232	ES	ENSMUST00000097618.10	known	0.00	0	12.0	0	7;17	n	0.00	0	9.0	0	6;12	n	0.04	1	27.0	1	28;26	n	0.00	0	8.5	0	9;8	n	0.00	0	19.0	0	21;17	n	0.12	2	14.0	2	14;14	y	0.00	0	22.5	0	17;28	n	0.00	0	10.5	0	14;7	n	0.00	0	4.5	0	3;6	n	0.00	0	7.5	0	9;6	n	0.00	0	9.5	0	9;10	n	0.08	1	11.5	1	12;11	n	ENSMUSG00000073599.11	Ecscr	chr18	protein_coding	endothelial cell surface expressed chemotaxis and apoptosis regulator
known_NIR_9025	chr18	35933268	35934369	+	35933268	35934327	A3SS	ENSMUST00000170693.9	known	0.00	0	236	0	236	n	0.00	0	153	0	153	n	0.00	1	224	1	224	n	0.01	2	196	2	196	y	0.00	0	253	0	253	n	0.00	0	113	0	113	n	0.00	1	253	1	253	n	0.00	0	105	0	105	n	0.01	1	161	1	161	n	0.00	0	249	0	249	n	0.00	0	196	0	196	n	0.00	1	273	1	273	n	ENSMUSG00000091896.9	Ube2d2a	chr18	protein_coding	ubiquitin-conjugating enzyme E2D 2A
known_NIR_9026	chr18	35963039	35991446	+	35962490	35991446	A5SS	ENSMUST00000235161.2	known	0.67	4	2	4	2	n	1.00	1	0	1	0	n	0.92	11	1	11	1	n	0.40	4	6	4	6	y	0.67	6	3	6	3	n	1.00	2	0	2	0	n	0.50	3	3	3	3	n	0.82	9	2	9	2	y	0.75	3	1	3	1	n	0.53	9	8	9	8	y	0.75	3	1	3	1	n	0.36	4	7	4	7	y	ENSMUSG00000046668.10	Cxxc5	chr18	protein_coding	CXXC finger 5
known_NIR_9027	chr18	35963292	35991446	+	35962490	35991446	A5SS	ENSMUST00000235161.2	known	0.89	16	2	16	2	y	1.00	7	0	7	0	n	0.95	20	1	20	1	n	0.67	12	6	12	6	y	0.90	28	3	28	3	y	1.00	8	0	8	0	n	0.73	8	3	8	3	y	0.88	15	2	15	2	y	0.93	14	1	14	1	n	0.76	26	8	26	8	y	0.91	10	1	10	1	n	0.68	15	7	15	7	y	ENSMUSG00000046668.10	Cxxc5	chr18	protein_coding	CXXC finger 5
known_NIR_9028	chr18	35963292	35991446	+	35963039	35991446	A5SS	ENSMUST00000060722.8	known	0.80	16	4	16	4	y	0.88	7	1	7	1	n	0.65	20	11	20	11	y	0.75	12	4	12	4	y	0.82	28	6	28	6	y	0.80	8	2	8	2	y	0.73	8	3	8	3	y	0.62	15	9	15	9	y	0.82	14	3	14	3	y	0.74	26	9	26	9	y	0.77	10	3	10	3	y	0.79	15	4	15	4	y	ENSMUSG00000046668.10	Cxxc5	chr18	protein_coding	CXXC finger 5
known_NIR_9029	chr18	35963452	35991446	+	35962490	35991446	A5SS	ENSMUST00000235161.2	known	0.92	24	2	24	2	y	1.00	27	0	27	0	n	0.98	43	1	43	1	n	0.87	40	6	40	6	y	0.96	64	3	64	3	y	1.00	23	0	23	0	n	0.91	31	3	31	3	y	0.93	28	2	28	2	y	0.97	35	1	35	1	n	0.82	37	8	37	8	y	0.96	27	1	27	1	n	0.79	26	7	26	7	y	ENSMUSG00000046668.10	Cxxc5	chr18	protein_coding	CXXC finger 5
known_NIR_9030	chr18	35963452	35991446	+	35963039	35991446	A5SS	ENSMUST00000060722.8	known	0.86	24	4	24	4	y	0.96	27	1	27	1	n	0.80	43	11	43	11	y	0.91	40	4	40	4	y	0.91	64	6	64	6	y	0.92	23	2	23	2	y	0.91	31	3	31	3	y	0.76	28	9	28	9	y	0.92	35	3	35	3	y	0.80	37	9	37	9	y	0.90	27	3	27	3	y	0.87	26	4	26	4	y	ENSMUSG00000046668.10	Cxxc5	chr18	protein_coding	CXXC finger 5
known_NIR_9031	chr18	35963452	35991446	+	35963292	35991446	A5SS	ENSMUST00000237291.2	known	0.60	24	16	24	16	y	0.79	27	7	27	7	y	0.68	43	20	43	20	y	0.77	40	12	40	12	y	0.70	64	28	64	28	y	0.74	23	8	23	8	y	0.79	31	8	31	8	y	0.65	28	15	28	15	y	0.71	35	14	35	14	y	0.59	37	26	37	26	y	0.73	27	10	27	10	y	0.63	26	15	26	15	y	ENSMUSG00000046668.10	Cxxc5	chr18	protein_coding	CXXC finger 5
known_NIR_9032	chr18	36481869	36499568	+	36481869;36483861	36483747;36499568	ES	ENSMUST00000235864.2	known	0.96	13	0.5	13	0;1	n	0.97	32	1.0	32	0;2	n	0.90	40	4.5	40	3;6	y	0.84	13	2.5	13	2;3	y	1.00	23	0.0	23	0;0	n	0.94	17	1.0	17	2;0	n	0.94	39	2.5	39	2;3	y	0.97	18	0.5	18	1;0	n	0.97	19	0.5	19	0;1	n	0.95	29	1.5	29	2;1	n	0.83	20	4.0	20	3;5	y	0.86	31	5.0	31	4;6	y	ENSMUSG00000046727.14	Cystm1	chr18	protein_coding	cysteine-rich transmembrane module containing 1
known_NIR_9033	chr18	36499794	36535550	+	36499794	36526249	3pMXE	ENSMUST00000139727.3	known	1.00	29	0	29	0	n	0.87	20	3	20	3	y	0.88	38	5	38	5	y	0.91	21	2	21	2	y	0.94	29	2	29	2	y	1.00	15	0	15	0	n	0.94	45	3	45	3	y	0.94	16	1	16	1	n	0.77	17	5	17	5	y	0.90	28	3	28	3	y	0.92	22	2	22	2	y	0.94	30	2	30	2	y	ENSMUSG00000046727.14	Cystm1	chr18	protein_coding	cysteine-rich transmembrane module containing 1
known_NIR_9034	chr18	36537513	36584133	-	36537513	36565359	A5SS&ES	ENSMUST00000237499.2	known	0.01	2	189	2	189	y	0.04	8	217	8	217	y	0.03	5	163	5	163	y	0.02	4	181	4	181	y	0.01	3	199	3	199	y	0.00	0	126	0	126	n	0.02	6	252	6	252	y	0.03	3	110	3	110	y	0.01	1	173	1	173	n	0.02	4	252	4	252	y	0.02	5	253	5	253	y	0.02	4	238	4	238	y	ENSMUSG00000024346.7	Pfdn1	chr18	protein_coding	prefoldin 1
known_NIR_9035	chr18	36537513	36584133	-	36537513;36565443	36565359;36584133	ES	ENSMUST00000025204.7	known	0.01	2	211.5	2	189;234	y	0.04	8	207.5	8	217;198	y	0.03	5	175.5	5	163;188	y	0.02	4	179.0	4	181;177	y	0.01	3	215.0	3	199;231	y	0.00	0	130.0	0	126;134	n	0.02	6	260.5	6	252;269	y	0.02	3	121.0	3	110;132	y	0.01	1	187.5	1	173;202	n	0.02	4	252.5	4	252;253	y	0.02	5	256.5	5	253;260	y	0.02	4	247.0	4	238;256	y	ENSMUSG00000024346.7	Pfdn1	chr18	protein_coding	prefoldin 1
known_NIR_9036	chr18	36565443	36584154	-	36565443	36584133	A5SS	ENSMUST00000025204.7	known	0.00	0	234	0	234	n	0.01	3	198	3	198	y	0.02	3	188	3	188	y	0.02	3	177	3	177	y	0.00	0	231	0	231	n	0.00	0	134	0	134	n	0.00	0	269	0	269	n	0.00	0	132	0	132	n	0.02	5	202	5	202	y	0.00	0	253	0	253	n	0.00	0	260	0	260	n	0.00	0	256	0	256	n	ENSMUSG00000024346.7	Pfdn1	chr18	protein_coding	prefoldin 1
known_NIR_9037	chr18	36694108	36708072	+	36693154	36708072	A5SS	ENSMUST00000134146.8	known	1.00	14	0	14	0	n	1.00	5	0	5	0	n	1.00	10	0	10	0	n	1.00	15	0	15	0	n	0.92	12	1	12	1	n	1.00	3	0	3	0	n	0.70	7	3	7	3	y	1.00	4	0	4	0	n	1.00	5	0	5	0	n	0.87	13	2	13	2	y	0.75	6	2	6	2	n	1.00	23	0	23	0	n	ENSMUSG00000024483.20	Ankhd1	chr18	protein_coding	ankyrin repeat and KH domain containing 1
known_NIR_9038	chr18	36747029	36747816	+	36747029	36747768	A3SS	ENSMUST00000006205.14	known	0.41	7	10	7	10	y	0.40	4	6	4	6	y	0.50	15	15	15	15	y	0.53	8	7	8	7	y	0.50	16	16	16	16	y	0.61	11	7	11	7	y	0.33	6	12	6	12	y	0.31	5	11	5	11	y	0.30	3	7	3	7	y	0.42	10	14	10	14	y	0.60	6	4	6	4	y	0.21	3	11	3	11	y	ENSMUSG00000024483.20	Ankhd1	chr18	protein_coding	ankyrin repeat and KH domain containing 1
known_NIR_9039	chr18	36747870	36765120	+	36747870	36757562	3pMXE	ENSMUST00000152060.8	known	0.22	5	18	5	18	y	0.15	2	11	2	11	y	0.41	11	16	11	16	y	0.41	9	13	9	13	y	0.43	9	12	9	12	y	0.62	8	5	8	5	y	0.54	7	6	7	6	y	0.29	2	5	2	5	n	0.20	3	12	3	12	y	0.32	6	13	6	13	y	0.55	6	5	6	5	y	0.48	12	13	12	13	y	ENSMUSG00000024483.20	Ankhd1	chr18	protein_coding	ankyrin repeat and KH domain containing 1
known_NIR_9040	chr18	36747870	36765120	+	36747870;36758320	36757562;36765120	ES	ENSMUST00000006205.14	known	0.23	5	16.5	5	18;15	y	0.17	2	10.0	2	11;9	y	0.32	11	23.5	11	16;31	y	0.36	9	16.0	9	13;19	y	0.37	9	15.5	9	12;19	y	0.52	8	7.5	8	5;10	y	0.44	7	9.0	7	6;12	y	0.15	2	11.5	2	5;18	y	0.21	3	11.5	3	12;11	y	0.31	6	13.5	6	13;14	y	0.55	6	5.0	6	5;5	y	0.43	12	16.0	12	13;19	y	ENSMUSG00000024483.20	Ankhd1	chr18	protein_coding	ankyrin repeat and KH domain containing 1
known_NIR_9041	chr18	36758320	36765120	+	36747870	36765120	A5SS	ENSMUST00000142780.2	known	0.75	15	5	15	5	y	0.82	9	2	9	2	y	0.74	31	11	31	11	y	0.68	19	9	19	9	y	0.68	19	9	19	9	y	0.56	10	8	10	8	y	0.63	12	7	12	7	y	0.90	18	2	18	2	y	0.79	11	3	11	3	y	0.70	14	6	14	6	y	0.45	5	6	5	6	y	0.61	19	12	19	12	y	ENSMUSG00000024483.20	Ankhd1	chr18	protein_coding	ankyrin repeat and KH domain containing 1
known_NIR_9042	chr18	36773413;36774531	36774452;36774630	+	36773413	36774630	cassetteExon	ENSMUST00000006205.14	known	0.12	3.0	23	3;3	23	y	0.03	0.5	14	1;0	14	n	0.02	0.5	29	1;0	29	n	0.15	2.5	14	5;0	14	n	0.08	3.0	34	5;1	34	n	0.00	0.0	12	0;0	12	n	0.00	0.0	23	0;0	23	n	0.00	0.0	14	0;0	14	n	0.07	1.0	13	2;0	13	n	0.05	1.0	21	1;1	21	n	0.12	1.0	7	2;0	7	n	0.06	2.0	29	3;1	29	n	ENSMUSG00000024483.20	Ankhd1	chr18	protein_coding	ankyrin repeat and KH domain containing 1
known_NIR_9043	chr18	36787319	36788476	+	36787319	36788527	A3SS	ENSMUST00000006205.14	known	0.73	47	17	47	17	y	0.84	66	13	66	13	y	0.81	75	18	75	18	y	0.77	49	15	49	15	y	0.75	78	26	78	26	y	0.75	36	12	36	12	y	0.82	71	16	71	16	y	0.76	28	9	28	9	y	0.69	31	14	31	14	y	0.70	58	25	58	25	y	0.63	37	22	37	22	y	0.70	40	17	40	17	y	ENSMUSG00000024483.20	Ankhd1	chr18	protein_coding	ankyrin repeat and KH domain containing 1
known_NIR_9044	chr18	36788730	36789772	+	36788730	36789739	A3SS	ENSMUST00000006205.14	known	0.06	5	77	5	77	y	0.04	3	69	3	69	y	0.02	2	103	2	103	y	0.02	1	59	1	59	n	0.02	2	107	2	107	y	0.00	0	48	0	48	n	0.03	3	85	3	85	y	0.00	0	43	0	43	n	0.03	2	58	2	58	y	0.00	0	65	0	65	n	0.06	4	65	4	65	y	0.04	3	77	3	77	y	ENSMUSG00000024483.20	Ankhd1	chr18	protein_coding	ankyrin repeat and KH domain containing 1
known_NIR_9045	chr18	36791191	36794050	+	36791191	36791453	3pMXE	ENSMUST00000006205.14	known	0.82	62	14	62	14	y	0.80	47	12	47	12	y	0.89	62	8	62	8	y	0.79	38	10	38	10	y	0.73	55	20	55	20	y	0.80	51	13	51	13	y	0.81	64	15	64	15	y	0.82	42	9	42	9	y	0.95	55	3	55	3	y	0.74	55	19	55	19	y	0.85	45	8	45	8	y	0.72	49	19	49	19	y	ENSMUSG00000024483.20	Ankhd1	chr18	protein_coding	ankyrin repeat and KH domain containing 1
known_NIR_9046	chr18	36797355	36798335	+	36794159	36798335	A5SS	ENSMUST00000140061.8	known	0.80	229	58	229	58	y	0.78	236	65	236	65	y	0.56	79	61	79	61	y	0.94	496	34	496	34	y	0.83	277	56	277	56	y	0.73	109	40	109	40	y	0.73	183	67	183	67	y	0.76	84	27	84	27	y	0.73	102	37	102	37	y	0.61	91	57	91	57	y	0.78	159	44	159	44	y	0.79	176	46	176	46	y	ENSMUSG00000117942.2	Maskbp3	chr18	protein_coding	multiple ankyrin repeats single KH domain binding protein 3
known_NIR_9047	chr18	36800946	36801705	-	36800952	36801705	A3SS	ENSMUST00000173875.9	known	0.01	5	412	5	412	y	0.01	7	502	7	502	y	0.01	2	396	2	396	y	0.03	11	416	11	416	y	0.01	4	542	4	542	y	0.02	5	239	5	239	y	0.02	8	520	8	520	y	0.01	3	249	3	249	y	0.01	5	363	5	363	y	0.01	7	527	7	527	y	0.02	9	434	9	434	y	0.01	3	493	3	493	y	ENSMUSG00000006050.13	Sra1	chr18	protein_coding	steroid receptor RNA activator 1
known_NIR_9048	chr18	36801901	36803301	-	36801901	36803057	A5SS&ES	ENSMUST00000173482.8	known	0.00	0	285	0	285	n	0.00	0	321	0	321	n	0.01	3	262	3	262	y	0.00	0	292	0	292	n	0.00	1	386	1	386	n	0.00	1	201	1	201	n	0.01	3	335	3	335	y	0.00	0	197	0	197	n	0.00	1	219	1	219	n	0.00	0	304	0	304	n	0.00	0	304	0	304	n	0.00	0	290	0	290	n	ENSMUSG00000006050.13	Sra1	chr18	protein_coding	steroid receptor RNA activator 1
known_NIR_9049	chr18	36801901	36803301	-	36801901;36803182	36803057;36803301	ES	ENSMUST00000173875.9	known	0.00	0	220.0	0	285;155	n	0.00	0	235.5	0	321;150	n	0.01	3	219.0	3	262;176	y	0.00	0	236.5	0	292;181	n	0.00	1	293.0	1	386;200	n	0.01	1	160.0	1	201;119	n	0.01	3	277.5	3	335;220	y	0.00	0	148.0	0	197;99	n	0.01	1	173.5	1	219;128	n	0.00	0	242.0	0	304;180	n	0.00	0	238.5	0	304;173	n	0.00	0	225.0	0	290;160	n	ENSMUSG00000006050.13	Sra1	chr18	protein_coding	steroid receptor RNA activator 1
known_NIR_9050	chr18	36801901	36803301	-	36803182	36803301	3pMXE	ENSMUST00000174125.2	known	0.00	0	155	0	155	n	0.00	0	150	0	150	n	0.02	3	176	3	176	y	0.00	0	181	0	181	n	0.00	1	200	1	200	n	0.01	1	119	1	119	n	0.01	3	220	3	220	y	0.00	0	99	0	99	n	0.01	1	128	1	128	n	0.00	0	180	0	180	n	0.00	0	173	0	173	n	0.00	0	160	0	160	n	ENSMUSG00000006050.13	Sra1	chr18	protein_coding	steroid receptor RNA activator 1
known_NIR_9051	chr18	36803182	36803315	-	36803182	36803301	A5SS	ENSMUST00000173875.9	known	0.00	0	155	0	155	n	0.01	2	150	2	150	y	0.01	2	176	2	176	y	0.01	1	181	1	181	n	0.00	0	200	0	200	n	0.00	0	119	0	119	n	0.01	3	220	3	220	y	0.00	0	99	0	99	n	0.01	1	128	1	128	n	0.01	1	180	1	180	n	0.00	0	173	0	173	n	0.00	0	160	0	160	n	ENSMUSG00000006050.13	Sra1	chr18	protein_coding	steroid receptor RNA activator 1
known_NIR_9052	chr18	36808194	36808450	-	36808194	36808334	A5SS	ENSMUST00000235552.2	known	0.13	7	48	7	48	y	0.00	0	44	0	44	n	0.22	11	40	11	40	y	0.05	2	39	2	39	y	0.12	9	64	9	64	y	0.16	5	26	5	26	y	0.09	4	40	4	40	y	0.00	0	14	0	14	n	0.00	0	25	0	25	n	0.05	2	41	2	41	y	0.19	5	21	5	21	y	0.13	9	58	9	58	y	ENSMUSG00000117679.2	Apbb3	chr18	protein_coding	amyloid beta (A4) precursor protein-binding, family B, member 3
known_NIR_9053	chr18	36808449	36809224	-	36808449;36808799	36808716;36809224	ES	ENSMUST00000001415.9	known	0.00	0	31.5	0	26;37	n	0.00	0	39.5	0	35;44	n	0.07	3	40.5	3	25;56	y	0.00	0	33.5	0	35;32	n	0.00	0	43.5	0	44;43	n	0.00	0	33.0	0	28;38	n	0.09	3	30.5	3	23;38	y	0.07	2	28.5	2	22;35	y	0.00	0	20.5	0	17;24	n	0.03	1	38.5	1	25;52	n	0.05	1	20.5	1	21;20	n	0.00	0	48.0	0	44;52	n	ENSMUSG00000117679.2	Apbb3	chr18	protein_coding	amyloid beta (A4) precursor protein-binding, family B, member 3
known_NIR_9054	chr18	36808577	36808716	-	36808449	36808716	A3SS	ENSMUST00000001415.9	known	0.07	2	26	2	26	y	0.12	5	35	5	35	y	0.22	7	25	7	25	y	0.12	5	35	5	35	y	0.15	8	44	8	44	y	0.10	3	28	3	28	y	0.18	5	23	5	23	y	0.19	5	22	5	22	y	0.00	0	17	0	17	n	0.22	7	25	7	25	y	0.19	5	21	5	21	y	0.17	9	44	9	44	y	ENSMUSG00000117679.2	Apbb3	chr18	protein_coding	amyloid beta (A4) precursor protein-binding, family B, member 3
known_NIR_9055	chr18	36810048	36810163	-	36810045	36810163	A3SS	ENSMUST00000001415.9	known	0.21	7	26	7	26	y	0.20	5	20	5	20	y	0.29	6	15	6	15	y	0.17	4	19	4	19	y	0.25	6	18	6	18	y	0.18	4	18	4	18	y	0.29	7	17	7	17	y	0.29	4	10	4	10	y	0.27	4	11	4	11	y	0.24	11	34	11	34	y	0.20	2	8	2	8	y	0.14	5	32	5	32	y	ENSMUSG00000117679.2	Apbb3	chr18	protein_coding	amyloid beta (A4) precursor protein-binding, family B, member 3
known_NIR_9056	chr18	36812676	36813481	+	36812676	36813569	A3SS	ENSMUST00000186538.7	known	0.15	4	23	4	23	y	0.06	1	17	1	17	n	0.17	5	25	5	25	y	0.08	2	24	2	24	y	0.20	6	24	6	24	y	0.00	0	20	0	20	n	0.07	2	27	2	27	y	0.22	2	7	2	7	n	0.21	3	11	3	11	y	0.16	3	16	3	16	y	0.05	1	18	1	18	n	0.10	3	27	3	27	y	ENSMUSG00000033272.13	Slc35a4	chr18	protein_coding	solute carrier family 35, member A4
known_NIR_9057	chr18	36870625	36870722	+	36870632	36870722	A5SS	ENSMUST00000237727.2	known	0.94	17	1	17	1	n	0.91	10	1	10	1	n	0.86	38	6	38	6	y	0.94	16	1	16	1	n	0.96	43	2	43	2	y	0.97	31	1	31	1	n	0.90	26	3	26	3	y	0.83	25	5	25	5	y	0.95	20	1	20	1	n	0.73	11	4	11	4	y	1.00	14	0	14	0	n	0.91	20	2	20	2	y	ENSMUSG00000006850.9	Tmco6	chr18	protein_coding	transmembrane and coiled-coil domains 6
known_NIR_9058	chr18	36877841	36880401	+	36877841;36878730	36878664;36880401	ES	ENSMUST00000007042.6	known	0.00	0	106.5	0	100;113	n	0.00	0	80.5	0	76;85	n	0.00	0	187.0	0	173;201	n	0.00	0	128.0	0	117;139	n	0.00	0	138.5	0	140;137	n	0.00	0	91.0	0	83;99	n	0.00	0	128.0	0	129;127	n	0.02	2	89.0	2	75;103	y	0.02	2	90.0	2	82;98	y	0.00	0	121.0	0	116;126	n	0.00	0	92.0	0	88;96	n	0.00	0	127.0	0	133;121	n	ENSMUSG00000024474.8	Ik	chr18	protein_coding	IK cytokine
known_NIR_9059	chr18	36895820	36895902	+	36895810	36895902	A5SS	ENSMUST00000049323.9	known	0.02	1	61	1	61	n	0.02	1	64	1	64	n	0.03	2	69	2	69	y	0.00	0	54	0	54	n	0.06	4	58	4	58	y	0.07	2	26	2	26	y	0.05	5	92	5	92	y	0.00	0	46	0	46	n	0.00	0	50	0	50	n	0.01	1	79	1	79	n	0.00	0	65	0	65	n	0.03	2	75	2	75	y	ENSMUSG00000042660.9	Wdr55	chr18	protein_coding	WD repeat domain 55
known_NIR_9060	chr18	36922337	36923187	+	36922337;36922662	36922420;36923187	ES	ENSMUST00000152954.8	known	0.07	3	38.5	3	38;39	y	0.05	2	41.0	2	37;45	y	0.00	0	35.0	0	29;41	n	0.02	1	52.5	1	50;55	n	0.00	0	57.0	0	46;68	n	0.11	3	24.5	3	20;29	y	0.06	3	46.5	3	42;51	y	0.00	0	23.5	0	20;27	n	0.03	1	38.5	1	24;53	n	0.01	1	66.0	1	66;66	n	0.00	0	50.0	0	39;61	n	0.00	0	57.0	0	58;56	n	ENSMUSG00000019143.16	Hars2	chr18	protein_coding	histidyl-tRNA synthetase 2
known_NIR_9061	chr18	37978544	37984604	-	37978551	37984604	A3SS	ENSMUST00000115634.8	known	0.00	0	102	0	102	n	0.00	0	80	0	80	n	0.02	2	112	2	112	y	0.00	0	130	0	130	n	0.02	3	158	3	158	y	0.00	0	58	0	58	n	0.00	0	142	0	142	n	0.00	0	71	0	71	n	0.00	0	80	0	80	n	0.00	0	123	0	123	n	0.00	0	101	0	101	n	0.02	2	109	2	109	y	ENSMUSG00000024456.17	Diaph1	chr18	protein_coding	diaphanous related formin 1
known_NIR_9062	chr18	38038212	38068255	-	38038212	38039441	5pMXE	ENSMUST00000115629.9	known	0.47	14	16	14	16	y	0.50	9	9	9	9	y	0.16	6	31	6	31	y	0.58	19	14	19	14	y	0.41	21	30	21	30	y	0.28	8	21	8	21	y	0.25	9	27	9	27	y	0.44	18	23	18	23	y	0.38	8	13	8	13	y	0.63	17	10	17	10	y	0.40	8	12	8	12	y	0.46	19	22	19	22	y	ENSMUSG00000024456.17	Diaph1	chr18	protein_coding	diaphanous related formin 1
known_NIR_9063	chr18	38038212;38039467	38039441;38068255	-	38038212	38068255	cassetteExon	ENSMUST00000115634.8	known	0.52	15.0	14	16;14	14	y	0.51	9.5	9	9;10	9	y	0.84	31.0	6	31;31	6	y	0.48	17.5	19	14;21	19	y	0.59	30.5	21	30;31	21	y	0.70	19.0	8	21;17	8	y	0.74	26.0	9	27;25	9	y	0.56	22.5	18	23;22	18	y	0.64	14.5	8	13;16	8	y	0.40	11.5	17	10;13	17	y	0.61	12.5	8	12;13	8	y	0.53	21.5	19	22;21	19	y	ENSMUSG00000024456.17	Diaph1	chr18	protein_coding	diaphanous related formin 1
known_NIR_9064	chr18	38044324	38068255	-	38038212	38068255	A3SS	ENSMUST00000115634.8	known	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	19	0	19	n	0.00	0	21	0	21	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.10	2	18	2	18	y	0.00	0	8	0	8	n	0.00	0	17	0	17	n	0.00	0	8	0	8	n	0.00	0	19	0	19	n	ENSMUSG00000024456.17	Diaph1	chr18	protein_coding	diaphanous related formin 1
known_NIR_9065	chr18	38078828	38087735	-	38078828;38085666	38085524;38087735	ES	ENSMUST00000043498.9	known	0.00	0	67.5	0	81;54	n	0.00	0	59.0	0	56;62	n	0.00	0	79.0	0	72;86	n	0.00	0	75.5	0	77;74	n	0.00	0	107.5	0	105;110	n	0.00	0	47.0	0	38;56	n	0.00	0	109.5	0	112;107	n	0.04	2	50.0	2	53;47	y	0.00	0	76.5	0	72;81	n	0.00	0	121.0	0	113;129	n	0.01	1	74.0	1	80;68	n	0.00	0	85.5	0	85;86	n	ENSMUSG00000024454.17	Hdac3	chr18	protein_coding	histone deacetylase 3
known_NIR_9066	chr18	38078828	38087735	-	38085666	38087735	A3SS&ES	ENSMUST00000236756.2	known	0.00	0	54	0	54	n	0.00	0	62	0	62	n	0.00	0	86	0	86	n	0.00	0	74	0	74	n	0.00	0	110	0	110	n	0.00	0	56	0	56	n	0.00	0	107	0	107	n	0.04	2	47	2	47	y	0.00	0	81	0	81	n	0.00	0	129	0	129	n	0.01	1	68	1	68	n	0.00	0	86	0	86	n	ENSMUSG00000024454.17	Hdac3	chr18	protein_coding	histone deacetylase 3
known_NIR_9067	chr18	38106704	38107418	-	38106704;38107193	38107155;38107418	ES	ENSMUST00000237272.2	known	0.00	0	10.5	0	11;10	n	0.00	0	17.0	0	21;13	n	0.21	5	19.0	5	21;17	y	0.17	1	5.0	1	7;3	n	0.08	2	22.5	2	26;19	y	0.00	0	6.0	0	6;6	n	0.00	0	21.0	0	25;17	n	0.17	1	5.0	1	8;2	n	0.00	0	8.5	0	8;9	n	0.00	0	7.0	0	7;7	n	0.10	1	9.5	1	10;9	n	0.00	0	15.5	0	18;13	n	ENSMUSG00000024451.10	Arap3	chr18	protein_coding	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3
known_NIR_9068	chr18	38322995	38325105	-	38322995;38324152	38324114;38325105	ES	ENSMUST00000160721.8	known	0.86	48	8.0	48	9;7	y	0.93	31	2.5	31	2;3	y	0.92	74	6.5	74	9;4	y	0.92	53	4.5	53	3;6	y	0.89	77	9.5	77	8;11	y	0.89	33	4.0	33	3;5	y	0.86	66	11.0	66	12;10	y	0.94	65	4.0	65	5;3	y	0.89	35	4.5	35	3;6	y	0.84	90	17.0	90	17;17	y	0.91	46	4.5	46	4;5	y	0.94	82	5.0	82	6;4	y	ENSMUSG00000051375.16	Pcdh1	chr18	protein_coding	protocadherin 1
known_NIR_9069	chr18	38336659	38342612	-	38336659	38344842	A5SS	ENSMUST00000160721.8	known	0.06	1	15	1	15	n	0.05	1	19	1	19	n	0.07	4	56	4	56	y	0.08	4	48	4	48	y	0.05	3	60	3	60	y	0.10	4	37	4	37	y	0.00	0	31	0	31	n	0.07	3	40	3	40	y	0.08	3	33	3	33	y	0.00	0	37	0	37	n	0.17	4	19	4	19	y	0.05	3	53	3	53	y	ENSMUSG00000051375.16	Pcdh1	chr18	protein_coding	protocadherin 1
known_NIR_9070	chr18	38336659	38343337	-	38336659	38344842	A5SS	ENSMUST00000160721.8	known	0.06	1	15	1	15	n	0.00	0	19	0	19	n	0.02	1	56	1	56	n	0.04	2	48	2	48	y	0.03	2	60	2	60	y	0.03	1	37	1	37	n	0.00	0	31	0	31	n	0.05	2	40	2	40	y	0.03	1	33	1	33	n	0.00	0	37	0	37	n	0.00	0	19	0	19	n	0.00	0	53	0	53	n	ENSMUSG00000051375.16	Pcdh1	chr18	protein_coding	protocadherin 1
known_NIR_9071	chr18	38372242	38372626	-	38372242	38383231	A5SS	ENSMUST00000181757.8	known	0.71	5	2	5	2	n	0.50	5	5	5	5	y	0.50	5	5	5	5	y	1.00	6	0	6	0	n	0.33	1	2	1	2	n	0.83	5	1	5	1	n	0.75	6	2	6	2	n	0.50	2	2	2	2	n	0.00	0	2	0	2	n	0.40	2	3	2	3	n	0.80	4	1	4	1	n	0.17	1	5	1	5	n	ENSMUSG00000097080.9	1700086O06Rik	chr18	lncRNA	RIKEN cDNA 1700086O06 gene
known_NIR_9072	chr18	38372242	38382767	-	38372242	38372626	A5SS&ES	ENSMUST00000235818.2	known	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.29	2	5	2	5	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.40	4	6	4	6	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.75	3	1	3	1	n	ENSMUSG00000097080.9	1700086O06Rik	chr18	lncRNA	RIKEN cDNA 1700086O06 gene
known_NIR_9073	chr18	38372804	38382767	-	38372804;38374006	38373892;38382767	ES	ENSMUST00000235608.2	known	0.00	0	2.5	0	2;3	n	0.00	0	4.5	0	7;2	n	0.00	0	17.0	0	15;19	n	0.00	0	0.5	0	1;0	n	0.00	0	4.0	0	4;4	n	0.35	3	5.5	3	4;7	y	0.00	0	4.0	0	4;4	n	0.80	2	0.5	2	0;1	n	1.00	1	0.0	1	0;0	n	0.60	3	2.0	3	2;2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000097080.9	1700086O06Rik	chr18	lncRNA	RIKEN cDNA 1700086O06 gene
known_NIR_9074	chr18	38374006	38382767	-	38372242	38382767	A3SS	ENSMUST00000181871.3	known	0.75	3	1	3	1	n	1.00	2	0	2	0	n	0.90	19	2	19	2	y	-	-	-	-	-	-	1.00	4	0	4	0	n	1.00	7	0	7	0	n	0.50	4	4	4	4	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000097080.9	1700086O06Rik	chr18	lncRNA	RIKEN cDNA 1700086O06 gene
known_NIR_9075	chr18	38429851	38430519	+	38429851	38430553	A3SS	ENSMUST00000237903.2	known	0.08	2	23	2	23	y	0.20	2	8	2	8	y	0.15	4	22	4	22	y	0.20	4	16	4	16	y	0.27	11	30	11	30	y	0.12	3	22	3	22	y	0.33	10	20	10	20	y	0.25	6	18	6	18	y	0.24	4	13	4	13	y	0.14	5	30	5	30	y	0.35	8	15	8	15	y	0.06	1	17	1	17	n	ENSMUSG00000060450.15	Rnf14	chr18	protein_coding	ring finger protein 14
known_NIR_9076	chr18	38429851	38431362	+	38429851;38430628	38430553;38431362	ES	ENSMUST00000237903.2	known	0.00	0	27.0	0	23;31	n	0.12	2	15.0	2	8;22	y	0.04	1	27.5	1	22;33	n	0.13	3	20.0	3	16;24	y	0.11	5	38.5	5	30;47	y	0.00	0	24.0	0	22;26	n	0.00	0	29.0	0	20;38	n	0.00	0	26.5	0	18;35	n	0.00	0	19.0	0	13;25	n	0.10	4	36.5	4	30;43	y	0.05	1	20.5	1	15;26	n	0.00	0	24.0	0	17;31	n	ENSMUSG00000060450.15	Rnf14	chr18	protein_coding	ring finger protein 14
known_NIR_9077	chr18	38429851	38431362	+	38430628	38431362	A5SS&ES	ENSMUST00000235812.2	known	0.00	0	31	0	31	n	0.08	2	22	2	22	y	0.03	1	33	1	33	n	0.11	3	24	3	24	y	0.10	5	47	5	47	y	0.00	0	26	0	26	n	0.00	0	38	0	38	n	0.00	0	35	0	35	n	0.00	0	25	0	25	n	0.09	4	43	4	43	y	0.04	1	26	1	26	n	0.00	0	31	0	31	n	ENSMUSG00000060450.15	Rnf14	chr18	protein_coding	ring finger protein 14
known_NIR_9078	chr18	38429851	38432807	+	38430484	38432807	5pMXE	ENSMUST00000235491.2	known	0.97	32	1	32	1	n	0.83	10	2	10	2	y	1.00	47	0	47	0	n	0.96	52	2	52	2	y	0.90	52	6	52	6	y	0.84	37	7	37	7	y	0.93	43	3	43	3	y	1.00	32	0	32	0	n	0.95	21	1	21	1	n	0.94	51	3	51	3	y	1.00	21	0	21	0	n	0.94	45	3	45	3	y	ENSMUSG00000060450.15	Rnf14	chr18	protein_coding	ring finger protein 14
known_NIR_9079	chr18	38429851	38432807	+	38431448	38432807	A5SS&ES	ENSMUST00000235812.2	known	0.62	32	20	32	20	y	0.37	10	17	10	17	y	0.55	47	39	47	39	y	0.60	52	35	52	35	y	0.49	52	55	52	55	y	0.57	37	28	37	28	y	0.50	43	43	43	43	y	0.49	32	33	32	33	y	0.46	21	25	21	25	y	0.52	51	48	51	48	y	0.48	21	23	21	23	y	0.65	45	24	45	24	y	ENSMUSG00000060450.15	Rnf14	chr18	protein_coding	ring finger protein 14
known_NIR_9080	chr18	38429851;38430628	38430519;38431362	+	38429851	38431362	cassetteExon	ENSMUST00000237824.2	known	1.00	16.5	0	2;31	0	n	0.86	12.0	2	2;22	2	y	0.95	18.5	1	4;33	1	n	0.82	14.0	3	4;24	3	y	0.85	29.0	5	11;47	5	y	1.00	14.5	0	3;26	0	n	1.00	24.0	0	10;38	0	n	1.00	20.5	0	6;35	0	n	1.00	14.5	0	4;25	0	n	0.86	24.0	4	5;43	4	y	0.94	17.0	1	8;26	1	n	1.00	16.0	0	1;31	0	n	ENSMUSG00000060450.15	Rnf14	chr18	protein_coding	ring finger protein 14
known_NIR_9081	chr18	38429851;38430628	38430519;38432807	+	38429851	38432807	cassetteExon	ENSMUST00000170811.8	known	0.07	2.5	32	2;3	32	y	0.31	4.5	10	2;7	10	y	0.13	7.0	47	4;10	47	y	0.09	5.0	52	4;6	52	y	0.13	7.5	52	11;4	52	y	0.14	6.0	37	3;9	37	y	0.17	9.0	43	10;8	43	y	0.17	6.5	32	6;7	32	y	0.19	5.0	21	4;6	21	y	0.10	5.5	51	5;6	51	y	0.19	5.0	21	8;2	21	y	0.09	4.5	45	1;8	45	n	ENSMUSG00000060450.15	Rnf14	chr18	protein_coding	ring finger protein 14
known_NIR_9082	chr18	38429851;38430628	38430519;38432807	+	38429851;38431448	38431362;38432807	MXE	ENSMUST00000237824.2	known	0.20	2.5	10.0	2;3	0;20	n	0.32	4.5	9.5	2;7	2;17	y	0.26	7.0	20.0	4;10	1;39	n	0.21	5.0	19.0	4;6	3;35	y	0.20	7.5	30.0	11;4	5;55	y	0.30	6.0	14.0	3;9	0;28	n	0.30	9.0	21.5	10;8	0;43	n	0.28	6.5	16.5	6;7	0;33	n	0.29	5.0	12.5	4;6	0;25	n	0.17	5.5	26.0	5;6	4;48	y	0.29	5.0	12.0	8;2	1;23	n	0.27	4.5	12.0	1;8	0;24	n	ENSMUSG00000060450.15	Rnf14	chr18	protein_coding	ring finger protein 14
known_NIR_9083	chr18	38429851;38430628	38430553;38432807	+	38429851	38432807	cassetteExon	ENSMUST00000170811.8	known	0.29	13.0	32	23;3	32	y	0.43	7.5	10	8;7	10	y	0.25	16.0	47	22;10	47	y	0.17	11.0	52	16;6	52	y	0.25	17.0	52	30;4	52	y	0.30	15.5	37	22;9	37	y	0.25	14.0	43	20;8	43	y	0.28	12.5	32	18;7	32	y	0.31	9.5	21	13;6	21	y	0.26	18.0	51	30;6	51	y	0.29	8.5	21	15;2	21	y	0.22	12.5	45	17;8	45	y	ENSMUSG00000060450.15	Rnf14	chr18	protein_coding	ring finger protein 14
known_NIR_9084	chr18	38429851;38431448	38431362;38432807	+	38429851	38432807	cassetteExon	ENSMUST00000170811.8	known	0.24	10.0	32	0;20	32	n	0.49	9.5	10	2;17	10	y	0.30	20.0	47	1;39	47	n	0.27	19.0	52	3;35	52	y	0.37	30.0	52	5;55	52	y	0.27	14.0	37	0;28	37	n	0.33	21.5	43	0;43	43	n	0.34	16.5	32	0;33	32	n	0.37	12.5	21	0;25	21	n	0.34	26.0	51	4;48	51	y	0.36	12.0	21	1;23	21	n	0.21	12.0	45	0;24	45	n	ENSMUSG00000060450.15	Rnf14	chr18	protein_coding	ring finger protein 14
known_NIR_9085	chr18	38429851;38431448	38431362;38432807	+	38429851;38430628	38430553;38432807	MXE	ENSMUST00000236116.2	known	0.43	10.0	13.0	0;20	23;3	n	0.56	9.5	7.5	2;17	8;7	y	0.56	20.0	16.0	1;39	22;10	n	0.63	19.0	11.0	3;35	16;6	y	0.64	30.0	17.0	5;55	30;4	y	0.47	14.0	15.5	0;28	22;9	n	0.61	21.5	14.0	0;43	20;8	n	0.57	16.5	12.5	0;33	18;7	n	0.57	12.5	9.5	0;25	13;6	n	0.59	26.0	18.0	4;48	30;6	y	0.59	12.0	8.5	1;23	15;2	n	0.49	12.0	12.5	0;24	17;8	n	ENSMUSG00000060450.15	Rnf14	chr18	protein_coding	ring finger protein 14
known_NIR_9086	chr18	38430258	38430553	+	38429851	38430553	A5SS	ENSMUST00000237903.2	known	0.04	1	23	1	23	n	0.00	0	8	0	8	n	0.04	1	22	1	22	n	0.00	0	16	0	16	n	0.06	2	30	2	30	y	0.00	0	22	0	22	n	0.00	0	20	0	20	n	0.10	2	18	2	18	y	0.07	1	13	1	13	n	0.06	2	30	2	30	y	0.00	0	15	0	15	n	0.11	2	17	2	17	y	ENSMUSG00000060450.15	Rnf14	chr18	protein_coding	ring finger protein 14
known_NIR_9087	chr18	38430258	38431362	+	38430628	38431362	A5SS&ES	ENSMUST00000235812.2	known	0.00	0	31	0	31	n	0.00	0	22	0	22	n	0.00	0	33	0	33	n	0.04	1	24	1	24	n	0.00	0	47	0	47	n	0.00	0	26	0	26	n	0.00	0	38	0	38	n	0.00	0	35	0	35	n	0.00	0	25	0	25	n	0.04	2	43	2	43	y	0.00	0	26	0	26	n	0.00	0	31	0	31	n	ENSMUSG00000060450.15	Rnf14	chr18	protein_coding	ring finger protein 14
known_NIR_9088	chr18	38430258;38430628	38430553;38431362	+	38430258	38431362	cassetteExon	ENSMUST00000235811.2	known	1.00	16.0	0	1;31	0	n	1.00	11.0	0	0;22	0	n	1.00	17.0	0	1;33	0	n	0.92	12.0	1	0;24	1	n	1.00	24.5	0	2;47	0	n	1.00	13.0	0	0;26	0	n	1.00	19.0	0	0;38	0	n	1.00	18.5	0	2;35	0	n	1.00	13.0	0	1;25	0	n	0.92	22.5	2	2;43	2	y	1.00	13.0	0	0;26	0	n	1.00	16.5	0	2;31	0	n	ENSMUSG00000060450.15	Rnf14	chr18	protein_coding	ring finger protein 14
known_NIR_9089	chr18	38430258;38431448	38431362;38432807	+	38430258;38430628	38430553;38432807	MXE	ENSMUST00000171461.3	known	0.83	10.0	2.0	0;20	1;3	n	0.71	8.5	3.5	0;17	0;7	n	0.78	19.5	5.5	0;39	1;10	n	0.86	18.0	3.0	1;35	0;6	n	0.90	27.5	3.0	0;55	2;4	n	0.76	14.0	4.5	0;28	0;9	n	0.84	21.5	4.0	0;43	0;8	n	0.79	16.5	4.5	0;33	2;7	n	0.78	12.5	3.5	0;25	1;6	n	0.86	25.0	4.0	2;48	2;6	y	0.92	11.5	1.0	0;23	0;2	n	0.71	12.0	5.0	0;24	2;8	n	ENSMUSG00000060450.15	Rnf14	chr18	protein_coding	ring finger protein 14
known_NIR_9090	chr18	38430484	38432807	+	38430628	38432807	A5SS&ES	ENSMUST00000171461.3	known	0.25	1	3	1	3	n	0.22	2	7	2	7	n	0.00	0	10	0	10	n	0.25	2	6	2	6	n	0.60	6	4	6	4	y	0.44	7	9	7	9	y	0.27	3	8	3	8	y	0.00	0	7	0	7	n	0.14	1	6	1	6	n	0.33	3	6	3	6	n	0.00	0	2	0	2	n	0.27	3	8	3	8	y	ENSMUSG00000060450.15	Rnf14	chr18	protein_coding	ring finger protein 14
known_NIR_9091	chr18	38430484	38432807	+	38431448	38432807	A5SS&ES	ENSMUST00000235812.2	known	0.05	1	20	1	20	n	0.11	2	17	2	17	y	0.00	0	39	0	39	n	0.05	2	35	2	35	y	0.10	6	55	6	55	y	0.20	7	28	7	28	y	0.07	3	43	3	43	y	0.00	0	33	0	33	n	0.04	1	25	1	25	n	0.06	3	48	3	48	y	0.00	0	23	0	23	n	0.11	3	24	3	24	y	ENSMUSG00000060450.15	Rnf14	chr18	protein_coding	ring finger protein 14
known_NIR_9092	chr18	38430628	38432807	+	38430628;38431448	38431362;38432807	ES	ENSMUST00000235812.2	known	0.11	3	25.5	3	31;20	y	0.26	7	19.5	7	22;17	y	0.22	10	36.0	10	33;39	y	0.17	6	29.5	6	24;35	y	0.07	4	51.0	4	47;55	y	0.25	9	27.0	9	26;28	y	0.16	8	40.5	8	38;43	y	0.17	7	34.0	7	35;33	y	0.19	6	25.0	6	25;25	y	0.12	6	45.5	6	43;48	y	0.08	2	24.5	2	26;23	y	0.23	8	27.5	8	31;24	y	ENSMUSG00000060450.15	Rnf14	chr18	protein_coding	ring finger protein 14
known_NIR_9093	chr18	38433537	38434709	+	38433643	38434709	A5SS	ENSMUST00000072376.13	known	0.00	0	49	0	49	n	0.00	0	31	0	31	n	0.03	3	112	3	112	y	0.00	0	75	0	75	n	0.00	0	110	0	110	n	0.00	0	53	0	53	n	0.00	0	92	0	92	n	0.00	0	51	0	51	n	0.00	0	60	0	60	n	0.01	1	77	1	77	n	0.00	0	56	0	56	n	0.00	0	86	0	86	n	ENSMUSG00000060450.15	Rnf14	chr18	protein_coding	ring finger protein 14
known_NIR_9094	chr18	38433537	38440918	+	38433643	38440918	A5SS	ENSMUST00000170811.8	known	0.00	0	42	0	42	n	0.09	2	21	2	21	y	0.00	0	42	0	42	n	0.00	0	35	0	35	n	0.00	0	51	0	51	n	0.00	0	31	0	31	n	0.00	0	38	0	38	n	0.00	0	31	0	31	n	0.00	0	46	0	46	n	0.00	0	38	0	38	n	0.00	0	40	0	40	n	0.00	0	38	0	38	n	ENSMUSG00000060450.15	Rnf14	chr18	protein_coding	ring finger protein 14
known_NIR_9095	chr18	38433537	38440918	+	38434860	38440918	A5SS&ES	ENSMUST00000072376.13	known	0.00	0	52	0	52	n	0.04	2	48	2	48	y	0.00	0	144	0	144	n	0.00	0	118	0	118	n	0.00	0	134	0	134	n	0.00	0	69	0	69	n	0.00	0	91	0	91	n	0.00	0	72	0	72	n	0.00	0	69	0	69	n	0.00	0	117	0	117	n	0.00	0	77	0	77	n	0.00	0	102	0	102	n	ENSMUSG00000060450.15	Rnf14	chr18	protein_coding	ring finger protein 14
known_NIR_9096	chr18	38433643	38440918	+	38433643	38434709	3pMXE	ENSMUST00000237903.2	known	0.46	42	49	42	49	y	0.40	21	31	21	31	y	0.27	42	112	42	112	y	0.32	35	75	35	75	y	0.32	51	110	51	110	y	0.37	31	53	31	53	y	0.29	38	92	38	92	y	0.38	31	51	31	51	y	0.43	46	60	46	60	y	0.33	38	77	38	77	y	0.42	40	56	40	56	y	0.31	38	86	38	86	y	ENSMUSG00000060450.15	Rnf14	chr18	protein_coding	ring finger protein 14
known_NIR_9097	chr18	38433643;38434860	38434709;38440918	+	38433643	38440918	cassetteExon	ENSMUST00000170811.8	known	0.55	50.5	42	49;52	42	y	0.65	39.5	21	31;48	21	y	0.75	128.0	42	112;144	42	y	0.73	96.5	35	75;118	35	y	0.71	122.0	51	110;134	51	y	0.66	61.0	31	53;69	31	y	0.71	91.5	38	92;91	38	y	0.66	61.5	31	51;72	31	y	0.58	64.5	46	60;69	46	y	0.72	97.0	38	77;117	38	y	0.62	66.5	40	56;77	40	y	0.71	94.0	38	86;102	38	y	ENSMUSG00000060450.15	Rnf14	chr18	protein_coding	ring finger protein 14
known_NIR_9098	chr18	38463713;38465205	38465021;38466207	-	38463713	38466207	cassetteExon	ENSMUST00000235590.2	known	0.95	41.0	2	55;27	2	y	1.00	23.0	0	22;24	0	n	0.92	22.5	2	21;24	2	y	1.00	44.0	0	45;43	0	n	1.00	32.0	0	28;36	0	n	1.00	12.5	0	15;10	0	n	0.97	34.5	1	37;32	1	n	1.00	15.0	0	17;13	0	n	1.00	40.5	0	39;42	0	n	0.96	47.0	2	35;59	2	y	1.00	30.0	0	35;25	0	n	0.96	54.5	2	46;63	2	y	ENSMUSG00000052102.16	Gnpda1	chr18	protein_coding	glucosamine-6-phosphate deaminase 1
known_NIR_9099	chr18	38471275	38471915	-	38471275	38471961	A5SS	ENSMUST00000237487.2	known	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.07	1	14	1	14	n	0.00	0	26	0	26	n	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.15	2	11	2	11	y	0.00	0	35	0	35	n	0.00	0	21	0	21	n	0.00	0	19	0	19	n	0.00	0	37	0	37	n	ENSMUSG00000052102.16	Gnpda1	chr18	protein_coding	glucosamine-6-phosphate deaminase 1
known_NIR_9100	chr18	38585424	38589108	+	38585482	38589108	A5SS	ENSMUST00000236052.2	known	0.00	2	767	2	767	y	0.00	3	696	3	696	y	0.01	5	579	5	579	y	0.01	5	821	5	821	y	0.00	0	822	0	822	n	0.01	2	329	2	329	y	0.01	7	934	7	934	y	0.00	0	373	0	373	n	0.01	5	703	5	703	y	0.01	5	984	5	984	y	0.01	5	808	5	808	y	0.01	6	1052	6	1052	y	ENSMUSG00000024425.5	Ndfip1	chr18	protein_coding	Nedd4 family interacting protein 1
known_NIR_9101	chr18	38593703	38597314	+	38593703	38597330	A3SS	ENSMUST00000236052.2	known	0.05	42	746	42	746	y	0.05	38	694	38	694	y	0.05	26	522	26	522	y	0.06	44	749	44	749	y	0.05	46	792	46	792	y	0.05	14	292	14	292	y	0.04	33	773	33	773	y	0.06	23	395	23	395	y	0.07	54	699	54	699	y	0.06	67	1028	67	1028	y	0.06	54	814	54	814	y	0.05	58	1029	58	1029	y	ENSMUSG00000024425.5	Ndfip1	chr18	protein_coding	Nedd4 family interacting protein 1
known_NIR_9102	chr18	38980203;38988096	38988007;38991599	-	38980203	38991599	cassetteExon	ENSMUST00000040647.11	known	0.03	3.5	106	0;7	106	n	0.03	2.0	59	0;4	59	n	0.02	2.5	104	0;5	104	n	0.01	1.5	159	0;3	159	n	0.06	12.0	200	0;24	200	n	0.03	2.0	76	0;4	76	n	0.01	2.5	176	2;3	176	y	0.02	3.0	148	0;6	148	n	0.03	2.0	68	0;4	68	n	0.03	4.0	148	0;8	148	n	0.01	1.5	110	0;3	110	n	0.04	3.0	70	0;6	70	n	ENSMUSG00000036585.17	Fgf1	chr18	protein_coding	fibroblast growth factor 1
known_NIR_9103	chr18	38991801	38999110	-	38991801	38999604	A5SS	ENSMUST00000115582.8	known	0.02	1	48	1	48	n	0.00	0	49	0	49	n	0.00	0	26	0	26	n	0.03	3	83	3	83	y	0.00	0	83	0	83	n	0.00	0	34	0	34	n	0.00	0	124	0	124	n	0.03	2	70	2	70	y	0.04	2	46	2	46	y	0.00	0	66	0	66	n	0.00	0	64	0	64	n	0.00	0	31	0	31	n	ENSMUSG00000036585.17	Fgf1	chr18	protein_coding	fibroblast growth factor 1
known_NIR_9104	chr18	38991801	38999110	-	38991801	38999888	A5SS	ENSMUST00000236630.2	known	0.03	1	35	1	35	n	0.00	0	32	0	32	n	0.00	0	49	0	49	n	0.05	3	54	3	54	y	0.00	0	56	0	56	n	0.00	0	41	0	41	n	0.00	0	61	0	61	n	0.04	2	44	2	44	y	0.05	2	36	2	36	y	0.00	0	51	0	51	n	0.00	0	31	0	31	n	0.00	0	27	0	27	n	ENSMUSG00000036585.17	Fgf1	chr18	protein_coding	fibroblast growth factor 1
known_NIR_9105	chr18	38991801	38999110	-	38991801	39051600	A5SS	ENSMUST00000040647.11	known	0.12	1	7	1	7	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.30	3	7	3	7	y	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.40	2	3	2	3	n	0.20	2	8	2	8	y	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	ENSMUSG00000036585.17	Fgf1	chr18	protein_coding	fibroblast growth factor 1
known_NIR_9106	chr18	38991801	38999604	-	38991801	39051600	A5SS	ENSMUST00000040647.11	known	0.87	48	7	48	7	y	0.96	49	2	49	2	y	1.00	26	0	26	0	n	0.92	83	7	83	7	y	0.89	83	10	83	10	y	0.92	34	3	34	3	y	0.95	124	7	124	7	y	0.96	70	3	70	3	y	0.85	46	8	46	8	y	0.92	66	6	66	6	y	0.90	64	7	64	7	y	0.89	31	4	31	4	y	ENSMUSG00000036585.17	Fgf1	chr18	protein_coding	fibroblast growth factor 1
known_NIR_9107	chr18	38991801	38999888	-	38991801	38999604	5pMXE	ENSMUST00000115582.8	known	0.42	35	48	35	48	y	0.40	32	49	32	49	y	0.65	49	26	49	26	y	0.39	54	83	54	83	y	0.40	56	83	56	83	y	0.55	41	34	41	34	y	0.33	61	124	61	124	y	0.39	44	70	44	70	y	0.44	36	46	36	46	y	0.44	51	66	51	66	y	0.33	31	64	31	64	y	0.47	27	31	27	31	y	ENSMUSG00000036585.17	Fgf1	chr18	protein_coding	fibroblast growth factor 1
known_NIR_9108	chr18	38991801	38999888	-	38991801	39051600	A5SS	ENSMUST00000040647.11	known	0.83	35	7	35	7	y	0.94	32	2	32	2	y	1.00	49	0	49	0	n	0.89	54	7	54	7	y	0.85	56	10	56	10	y	0.93	41	3	41	3	y	0.90	61	7	61	7	y	0.94	44	3	44	3	y	0.82	36	8	36	8	y	0.89	51	6	51	6	y	0.82	31	7	31	7	y	0.87	27	4	27	4	y	ENSMUSG00000036585.17	Fgf1	chr18	protein_coding	fibroblast growth factor 1
known_NIR_9109	chr18	38991801	39062159	-	38991801	38999604	5pMXE	ENSMUST00000115582.8	known	0.00	0	48	0	48	n	0.00	0	49	0	49	n	0.00	0	26	0	26	n	0.00	0	83	0	83	n	0.00	0	83	0	83	n	0.00	0	34	0	34	n	0.00	0	124	0	124	n	0.03	2	70	2	70	y	0.00	0	46	0	46	n	0.00	0	66	0	66	n	0.00	0	64	0	64	n	0.00	0	31	0	31	n	ENSMUSG00000036585.17	Fgf1	chr18	protein_coding	fibroblast growth factor 1
known_NIR_9110	chr18	38991801	39062159	-	38991801	38999888	5pMXE	ENSMUST00000236630.2	known	0.00	0	35	0	35	n	0.00	0	32	0	32	n	0.00	0	49	0	49	n	0.00	0	54	0	54	n	0.00	0	56	0	56	n	0.00	0	41	0	41	n	0.00	0	61	0	61	n	0.04	2	44	2	44	y	0.00	0	36	0	36	n	0.00	0	51	0	51	n	0.00	0	31	0	31	n	0.00	0	27	0	27	n	ENSMUSG00000036585.17	Fgf1	chr18	protein_coding	fibroblast growth factor 1
known_NIR_9111	chr18	39439905	39440071	+	39439905	39490606	A3SS	ENSMUST00000097593.9	known	0.67	4	2	4	2	n	0.67	2	1	2	1	n	0.00	0	5	0	5	n	0.60	9	6	9	6	y	0.36	4	7	4	7	y	1.00	1	0	1	0	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.62	5	3	5	3	n	0.33	4	8	4	8	y	0.88	7	1	7	1	n	0.40	4	6	4	6	y	ENSMUSG00000036452.19	Arhgap26	chr18	protein_coding	Rho GTPase activating protein 26
known_NIR_9112	chr18	39495907	39496170	+	39490716	39496170	A5SS	ENSMUST00000155576.8	known	0.77	10	3	10	3	y	1.00	2	0	2	0	n	0.36	4	7	4	7	y	0.67	16	8	16	8	y	0.73	8	3	8	3	y	1.00	2	0	2	0	n	0.00	0	3	0	3	n	0.20	2	8	2	8	y	0.86	18	3	18	3	y	0.62	10	6	10	6	y	0.70	19	8	19	8	y	0.62	8	5	8	5	y	ENSMUSG00000036452.19	Arhgap26	chr18	protein_coding	Rho GTPase activating protein 26
known_NIR_9113	chr18	39495907	39496170	+	39490881	39496170	A5SS	ENSMUST00000097593.9	known	1.00	10	0	10	0	n	1.00	2	0	2	0	n	1.00	4	0	4	0	n	1.00	16	0	16	0	n	1.00	8	0	8	0	n	1.00	2	0	2	0	n	-	-	-	-	-	-	1.00	2	0	2	0	n	0.90	18	2	18	2	y	1.00	10	0	10	0	n	0.95	19	1	19	1	n	0.89	8	1	8	1	n	ENSMUSG00000036452.19	Arhgap26	chr18	protein_coding	Rho GTPase activating protein 26
known_NIR_9114	chr18	39557552	39561667	-	39557552	39561670	A5SS	ENSMUST00000115567.8	known	0.22	7	25	7	25	y	0.11	3	24	3	24	y	0.09	7	70	7	70	y	0.12	6	46	6	46	y	0.07	4	57	4	57	y	0.03	1	30	1	30	n	0.08	4	47	4	47	y	0.06	2	32	2	32	y	0.10	4	37	4	37	y	0.07	5	64	5	64	y	0.09	3	29	3	29	y	0.09	5	49	5	49	y	ENSMUSG00000024431.16	Nr3c1	chr18	protein_coding	nuclear receptor subfamily 3, group C, member 1
known_NIR_9115	chr18	39620298	39621993	-	39620298	39622530	A5SS	ENSMUST00000152853.2	known	0.27	3	8	3	8	y	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.11	2	17	2	17	y	0.00	0	23	0	23	n	0.40	2	3	2	3	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.10	1	9	1	9	n	0.20	4	16	4	16	y	0.18	2	9	2	9	y	0.21	4	15	4	15	y	ENSMUSG00000024431.16	Nr3c1	chr18	protein_coding	nuclear receptor subfamily 3, group C, member 1
known_NIR_9116	chr18	39620298	39621993	-	39620298	39623621	A5SS	ENSMUST00000115567.8	known	0.50	3	3	3	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.50	2	2	2	2	n	0.00	0	10	0	10	n	0.67	2	1	2	1	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.33	1	2	1	2	n	0.31	4	9	4	9	y	0.40	2	3	2	3	n	0.29	4	10	4	10	y	ENSMUSG00000024431.16	Nr3c1	chr18	protein_coding	nuclear receptor subfamily 3, group C, member 1
known_NIR_9117	chr18	39620298	39622530	-	39620298	39623621	A5SS	ENSMUST00000115567.8	known	0.73	8	3	8	3	y	0.50	3	3	3	3	n	0.83	10	2	10	2	y	0.89	17	2	17	2	y	0.70	23	10	23	10	y	0.75	3	1	3	1	n	0.70	7	3	7	3	y	0.50	6	6	6	6	y	0.82	9	2	9	2	y	0.64	16	9	16	9	y	0.75	9	3	9	3	y	0.60	15	10	15	10	y	ENSMUSG00000024431.16	Nr3c1	chr18	protein_coding	nuclear receptor subfamily 3, group C, member 1
known_NIR_9118	chr18	39620298	39624125	-	39620298	39622530	5pMXE	ENSMUST00000152853.2	known	0.00	0	8	0	8	n	0.40	2	3	2	3	n	0.17	2	10	2	10	y	0.06	1	17	1	17	n	0.00	0	23	0	23	n	0.25	1	3	1	3	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.06	1	15	1	15	n	ENSMUSG00000024431.16	Nr3c1	chr18	protein_coding	nuclear receptor subfamily 3, group C, member 1
known_NIR_9119	chr18	42351709	42354544	-	42351709;42353013	42352923;42354544	ES	ENSMUST00000097590.5	known	0.00	0	41.0	0	37;45	n	0.03	1	32.5	1	33;32	n	0.05	6	104.5	6	97;112	y	0.00	0	48.0	0	49;47	n	0.01	1	67.0	1	67;67	n	0.00	0	38.0	0	39;37	n	0.02	1	46.5	1	47;46	n	0.05	2	41.5	2	44;39	y	0.07	3	37.0	3	25;49	y	0.07	3	40.5	3	32;49	y	0.05	2	40.0	2	40;40	y	0.03	2	56.0	2	58;54	y	ENSMUSG00000024493.10	Lars	chr18	protein_coding	leucyl-tRNA synthetase
known_NIR_9120	chr18	42438879;42447200	42447036;42450666	+	42438879	42450666	cassetteExon	ENSMUST00000091920.6	known	1.00	7.0	0	7;7	0	n	0.64	3.5	2	4;3	2	n	0.71	14.5	6	11;18	6	y	0.50	4.0	4	2;6	4	y	0.71	12.0	5	9;15	5	y	0.33	4.0	8	4;4	8	y	1.00	5.5	0	3;8	0	n	0.68	6.5	3	4;9	3	y	0.87	6.5	1	3;10	1	n	0.83	5.0	1	3;7	1	n	0.67	4.0	2	6;2	2	y	0.76	9.5	3	5;14	3	y	ENSMUSG00000024491.17	Rbm27	chr18	protein_coding	RNA binding motif protein 27
known_NIR_9121	chr18	42663955	42669243	+	42663955;42668212	42668150;42669243	ES	ENSMUST00000237602.2	known	0.47	4	4.5	4	2;7	y	0.40	1	1.5	1	2;1	n	0.41	7	10.0	7	7;13	y	0.43	5	6.5	5	4;9	y	0.53	5	4.5	5	2;7	y	0.00	0	3.0	0	4;2	n	0.50	4	4.0	4	5;3	y	0.41	6	8.5	6	8;9	y	0.00	0	5.5	0	3;8	n	0.43	6	8.0	6	9;7	y	0.56	7	5.5	7	4;7	y	0.48	5	5.5	5	4;7	y	ENSMUSG00000024498.17	Tcerg1	chr18	protein_coding	transcription elongation regulator 1 (CA150)
known_NIR_9122	chr18	42683173;42684225	42684175;42685557	+	42683173	42685557	cassetteExon	ENSMUST00000237602.2	known	0.00	0.0	5	0;0	5	n	0.00	0.0	3	0;0	3	n	0.14	3.0	18	4;2	18	y	0.00	0.0	24	0;0	24	n	0.00	0.0	22	0;0	22	n	0.00	0.0	11	0;0	11	n	0.10	1.5	14	2;1	14	n	0.04	0.5	11	1;0	11	n	0.00	0.0	11	0;0	11	n	0.08	1.0	11	1;1	11	n	0.00	0.0	7	0;0	7	n	0.00	0.0	12	0;0	12	n	ENSMUSG00000024498.17	Tcerg1	chr18	protein_coding	transcription elongation regulator 1 (CA150)
known_NIR_9123	chr18	42706425;42707318	42707225;42707583	+	42706425	42707583	cassetteExon	ENSMUST00000237602.2	known	0.39	9.0	14	7;11	14	y	0.24	5.5	17	5;6	17	y	0.06	2.0	32	1;3	32	n	0.23	3.5	12	1;6	12	n	0.19	6.5	27	5;8	27	y	0.11	2.0	17	1;3	17	n	0.39	9.5	15	10;9	15	y	0.10	1.5	14	3;0	14	n	0.35	5.5	10	4;7	10	y	0.25	7.0	21	3;11	21	y	0.20	5.0	20	4;6	20	y	0.51	10.5	10	12;9	10	y	ENSMUSG00000024498.17	Tcerg1	chr18	protein_coding	transcription elongation regulator 1 (CA150)
known_NIR_9124	chr18	4375778	4379569	+	4354192	4379569	A5SS	ENSMUST00000234586.2	known	1.00	20	0	20	0	n	1.00	13	0	13	0	n	1.00	36	0	36	0	n	1.00	41	0	41	0	n	1.00	33	0	33	0	n	1.00	15	0	15	0	n	1.00	28	0	28	0	n	1.00	15	0	15	0	n	1.00	37	0	37	0	n	1.00	42	0	42	0	n	0.92	24	2	24	2	y	1.00	40	0	40	0	n	ENSMUSG00000117594.2	Gm50096	chr18	lncRNA	predicted gene, 50096
known_NIR_9125	chr18	4379741	4380654	+	4379741	4380673	A3SS	ENSMUST00000234586.2	known	0.79	27	7	27	7	y	0.89	8	1	8	1	n	0.89	17	2	17	2	y	0.82	23	5	23	5	y	0.82	27	6	27	6	y	1.00	5	0	5	0	n	0.72	21	8	21	8	y	0.87	13	2	13	2	y	0.82	18	4	18	4	y	0.84	46	9	46	9	y	0.91	29	3	29	3	y	0.74	23	8	23	8	y	ENSMUSG00000117594.2	Gm50096	chr18	lncRNA	predicted gene, 50096
known_NIR_9126	chr18	4380887	4383189	+	4380887	4383185	A3SS	ENSMUST00000234186.2	known	0.75	21	7	21	7	y	0.81	13	3	13	3	y	0.85	22	4	22	4	y	0.88	29	4	29	4	y	0.80	33	8	33	8	y	0.79	15	4	15	4	y	0.69	11	5	11	5	y	0.69	9	4	9	4	y	0.81	13	3	13	3	y	0.76	29	9	29	9	y	0.77	17	5	17	5	y	0.79	34	9	34	9	y	ENSMUSG00000024234.8	Mtpap	chr18	protein_coding	mitochondrial poly(A) polymerase
known_NIR_9127	chr18	44467223	44469956	+	44467223	44469834	A3SS	ENSMUST00000025349.12	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.43	39	51	39	51	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024471.13	Myot	chr18	protein_coding	myotilin
known_NIR_9128	chr18	45707833	45725073	+	45694383	45725073	A5SS	ENSMUST00000183850.8	known	0.05	2	39	2	39	y	0.00	0	31	0	31	n	0.00	0	21	0	21	n	0.00	0	60	0	60	n	0.02	2	80	2	80	y	0.00	0	23	0	23	n	0.00	0	49	0	49	n	0.00	0	47	0	47	n	0.00	0	41	0	41	n	0.05	3	58	3	58	y	0.00	0	35	0	35	n	0.01	1	77	1	77	n	ENSMUSG00000054477.17	Kcnn2	chr18	protein_coding	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2
known_NIR_9129	chr18	45803395	45808322	+	45803395	45810004	A3SS	ENSMUST00000183850.8	known	0.10	11	104	11	104	y	0.08	7	85	7	85	y	0.03	1	38	1	38	n	0.06	6	96	6	96	y	0.07	9	119	9	119	y	0.05	2	39	2	39	y	0.07	8	102	8	102	y	0.11	7	58	7	58	y	0.06	5	82	5	82	y	0.08	9	108	9	108	y	0.08	6	69	6	69	y	0.07	10	125	10	125	y	ENSMUSG00000054477.17	Kcnn2	chr18	protein_coding	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2
known_NIR_9130	chr18	46396024	46407653	-	46396024	46407657	A5SS	ENSMUST00000236216.2	known	0.11	1	8	1	8	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	19	0	19	n	0.00	0	4	0	4	n	0.06	1	17	1	17	n	0.00	0	21	0	21	n	0.00	0	10	0	10	n	0.27	3	8	3	8	y	0.00	0	15	0	15	n	0.00	0	11	0	11	n	ENSMUSG00000024477.5	Pggt1b	chr18	protein_coding	protein geranylgeranyltransferase type I, beta subunit
known_NIR_9131	chr18	46730867	46731708	+	46730867;46731223	46731118;46731708	ES	ENSMUST00000238168.2	known	0.96	67	3.0	67	1;5	n	1.00	49	0.0	49	0;0	n	0.97	173	6.0	173	0;12	n	0.99	66	0.5	66	0;1	n	0.97	137	4.5	137	2;7	y	0.95	108	5.5	108	0;11	n	0.99	78	1.0	78	0;2	n	0.98	101	2.0	101	0;4	n	0.99	45	0.5	45	0;1	n	0.99	71	0.5	71	0;1	n	1.00	53	0.0	53	0;0	n	0.98	61	1.5	61	0;3	n	ENSMUSG00000057561.11	Eif1a	chr18	protein_coding	eukaryotic translation initiation factor 1A
known_NIR_9132	chr18	46730867	46731708	+	46731223	46731708	A5SS	ENSMUST00000237478.2	known	0.93	67	5	67	5	y	1.00	49	0	49	0	n	0.94	173	12	173	12	y	0.99	66	1	66	1	n	0.95	137	7	137	7	y	0.91	108	11	108	11	y	0.97	78	2	78	2	y	0.96	101	4	101	4	y	0.98	45	1	45	1	n	0.99	71	1	71	1	n	1.00	53	0	53	0	n	0.95	61	3	61	3	y	ENSMUSG00000057561.11	Eif1a	chr18	protein_coding	eukaryotic translation initiation factor 1A
known_NIR_9133	chr18	46848882	46853354	-	46848833	46853354	A3SS	ENSMUST00000035804.9	known	0.01	26	5114	26	5114	y	0.01	35	4310	35	4310	y	0.01	19	3617	19	3617	y	0.01	21	3771	21	3771	y	0.00	38	8172	38	8172	y	0.00	21	4359	21	4359	y	0.00	27	6996	27	6996	y	0.00	20	4076	20	4076	y	0.01	26	4800	26	4800	y	0.00	21	6485	21	6485	y	0.00	20	4618	20	4618	y	0.00	22	5205	22	5205	y	ENSMUSG00000033022.9	Cdo1	chr18	protein_coding	cysteine dioxygenase 1, cytosolic
known_NIR_9134	chr18	46853447	46856385	-	46853505	46856385	A3SS	ENSMUST00000234179.2	known	0.20	45	180	45	180	y	0.00	0	123	0	123	n	0.26	42	118	42	118	y	0.00	0	118	0	118	n	0.25	85	261	85	261	y	0.28	47	123	47	123	y	0.25	72	217	72	217	y	0.19	35	151	35	151	y	0.00	0	176	0	176	n	0.00	0	203	0	203	n	0.19	39	165	39	165	y	0.17	42	204	42	204	y	ENSMUSG00000033022.9	Cdo1	chr18	protein_coding	cysteine dioxygenase 1, cytosolic
known_NIR_9135	chr18	46853447	46856385	-	46853508	46856385	A3SS	ENSMUST00000035804.9	known	0.01	45	4534	45	4534	y	0.00	0	3486	0	3486	n	0.01	42	3162	42	3162	y	0.00	0	3300	0	3300	n	0.01	85	7684	85	7684	y	0.01	47	3953	47	3953	y	0.01	72	6054	72	6054	y	0.01	35	3710	35	3710	y	0.00	0	3943	0	3943	n	0.00	0	5443	0	5443	n	0.01	39	4037	39	4037	y	0.01	42	4738	42	4738	y	ENSMUSG00000033022.9	Cdo1	chr18	protein_coding	cysteine dioxygenase 1, cytosolic
known_NIR_9136	chr18	46853505	46856385	-	46853508	46856385	A3SS	ENSMUST00000035804.9	known	0.04	180	4534	180	4534	y	0.03	123	3486	123	3486	y	0.04	118	3162	118	3162	y	0.03	118	3300	118	3300	y	0.03	261	7684	261	7684	y	0.03	123	3953	123	3953	y	0.03	217	6054	217	6054	y	0.04	151	3710	151	3710	y	0.04	176	3943	176	3943	y	0.04	203	5443	203	5443	y	0.04	165	4037	165	4037	y	0.04	204	4738	204	4738	y	ENSMUSG00000033022.9	Cdo1	chr18	protein_coding	cysteine dioxygenase 1, cytosolic
known_NIR_9137	chr18	46853508	46861040	-	46853508;46856462	46856385;46861040	ES	ENSMUST00000035804.9	known	0.00	8	4537.0	8	4534;4540	y	0.00	3	3408.5	3	3486;3331	y	0.00	6	3159.0	6	3162;3156	y	0.00	12	3252.0	12	3300;3204	y	0.00	20	7374.5	20	7684;7065	y	0.00	11	3917.5	11	3953;3882	y	0.00	11	5858.5	11	6054;5663	y	0.00	12	3666.5	12	3710;3623	y	0.00	7	3842.5	7	3943;3742	y	0.00	12	5258.5	12	5443;5074	y	0.00	12	3942.0	12	4037;3847	y	0.00	5	4584.5	5	4738;4431	y	ENSMUSG00000033022.9	Cdo1	chr18	protein_coding	cysteine dioxygenase 1, cytosolic
known_NIR_9138	chr18	46853508	46861040	-	46856462	46861040	A3SS&ES	ENSMUST00000234179.2	known	0.00	8	4540	8	4540	y	0.00	3	3331	3	3331	y	0.00	6	3156	6	3156	y	0.00	12	3204	12	3204	y	0.00	20	7065	20	7065	y	0.00	11	3882	11	3882	y	0.00	11	5663	11	5663	y	0.00	12	3623	12	3623	y	0.00	7	3742	7	3742	y	0.00	12	5074	12	5074	y	0.00	12	3847	12	3847	y	0.00	5	4431	5	4431	y	ENSMUSG00000033022.9	Cdo1	chr18	protein_coding	cysteine dioxygenase 1, cytosolic
known_NIR_9139	chr18	46870598	46874344	-	46870598	46874448	A5SS	ENSMUST00000035648.6	known	0.00	0	63	0	63	n	0.00	0	39	0	39	n	0.00	0	64	0	64	n	0.00	0	60	0	60	n	0.00	0	84	0	84	n	0.03	1	37	1	37	n	0.01	1	67	1	67	n	0.00	0	47	0	47	n	0.00	0	50	0	50	n	0.03	2	70	2	70	y	0.00	0	44	0	44	n	0.00	0	60	0	60	n	ENSMUSG00000032905.6	Atg12	chr18	protein_coding	autophagy related 12
known_NIR_9140	chr18	46887529;46890502	46890449;46891070	+	46887529	46891070	cassetteExon	ENSMUST00000025357.9	known	0.20	25.0	100	26;24	100	y	0.08	10.0	108	14;6	108	y	0.04	15.0	320	13;17	320	y	0.12	19.0	133	17;21	133	y	0.11	22.5	183	21;24	183	y	0.14	15.0	93	18;12	93	y	0.18	38.5	180	43;34	180	y	0.14	16.0	101	14;18	101	y	0.14	20.0	120	18;22	120	y	0.19	38.0	159	33;43	159	y	0.22	33.0	120	34;32	120	y	0.12	17.5	133	16;19	133	y	ENSMUSG00000024480.10	Ap3s1	chr18	protein_coding	adaptor-related protein complex 3, sigma 1 subunit
known_NIR_9141	chr18	47093573	47123546	+	47093573;47096837	47096727;47123546	ES	ENSMUST00000234952.2	known	0.00	0	11.0	0	18;4	n	0.00	0	14.0	0	28;0	n	0.12	2	14.5	2	25;4	y	0.00	0	15.0	0	20;10	n	0.06	1	16.0	1	28;4	n	0.00	0	13.5	0	19;8	n	0.24	4	13.0	4	21;5	y	0.00	0	11.5	0	18;5	n	0.11	2	16.0	2	27;5	y	0.00	0	22.5	0	38;7	n	0.06	1	15.5	1	26;5	n	0.00	0	16.0	0	26;6	n	ENSMUSG00000042705.10	Commd10	chr18	protein_coding	COMM domain containing 10
known_NIR_9142	chr18	47096837	47123546	+	47096837;47100962	47100807;47123546	ES	ENSMUST00000049388.9	known	0.21	4	15.0	4	16;14	y	0.00	0	17.5	0	20;15	n	0.19	4	17.5	4	12;23	y	0.43	10	13.0	10	14;12	y	0.11	4	33.5	4	39;28	y	0.33	8	16.5	8	16;17	y	0.18	5	23.5	5	17;30	y	0.40	5	7.5	5	8;7	y	0.26	5	14.5	5	17;12	y	0.22	7	25.5	7	25;26	y	0.28	5	13.0	5	8;18	y	0.19	6	25.5	6	26;25	y	ENSMUSG00000042705.10	Commd10	chr18	protein_coding	COMM domain containing 10
known_NIR_9143	chr18	47123656	47168620	+	47123656	47219319	A3SS	ENSMUST00000049388.9	known	0.07	1	13	1	13	n	0.00	0	24	0	24	n	0.12	3	21	3	21	y	0.07	2	25	2	25	y	0.00	0	34	0	34	n	0.00	0	17	0	17	n	0.12	4	30	4	30	y	0.00	0	13	0	13	n	0.10	2	19	2	19	y	0.14	5	30	5	30	y	0.00	0	20	0	20	n	0.02	1	40	1	40	n	ENSMUSG00000042705.10	Commd10	chr18	protein_coding	COMM domain containing 10
known_NIR_9144	chr18	47382651	47409653	-	47382651;47403840	47403676;47409653	ES	ENSMUST00000019791.14	known	0.00	0	1.5	0	2;1	n	0.00	0	4.0	0	5;3	n	-	-	-	-	-	-	0.00	0	1.5	0	3;0	n	0.00	0	0.5	0	0;1	n	0.00	0	1.5	0	1;2	n	0.29	2	5.0	2	2;8	y	0.00	0	1.0	0	0;2	n	-	-	-	-	-	-	0.25	1	3.0	1	1;5	n	0.00	0	2.5	0	3;2	n	0.00	0	2.5	0	2;3	n	ENSMUSG00000019647.17	Sema6a	chr18	protein_coding	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
known_NIR_9145	chr18	47382651	47409653	-	47403840	47409653	A3SS&ES	ENSMUST00000123228.8	known	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.20	2	8	2	8	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000019647.17	Sema6a	chr18	protein_coding	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
known_NIR_9146	chr18	4920874;4971197	4971090;5037108	+	4920874	5037108	cassetteExon	ENSMUST00000126977.8	known	0.11	0.5	4	1;0	4	n	0.23	1.5	5	2;1	5	n	1.00	4.0	0	6;2	0	n	0.44	4.0	5	5;3	5	y	0.76	9.5	3	11;8	3	y	0.67	2.0	1	4;0	1	n	0.69	4.5	2	5;4	2	y	0.68	6.5	3	12;1	3	n	0.38	2.5	4	1;4	4	n	0.57	6.5	5	4;9	5	y	0.80	4.0	1	5;3	1	n	0.73	8.0	3	6;10	3	y	ENSMUSG00000024236.19	Svil	chr18	protein_coding	supervillin
known_NIR_9147	chr18	4993987	5037108	+	4971197	5037108	A5SS	ENSMUST00000131210.8	known	1.00	2	0	2	0	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.20	2	8	2	8	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.10	1	9	1	9	n	0.40	2	3	2	3	n	0.00	0	10	0	10	n	ENSMUSG00000024236.19	Svil	chr18	protein_coding	supervillin
known_NIR_9148	chr18	4995149	5037108	+	4971197	5037108	A5SS	ENSMUST00000131210.8	known	-	-	-	-	-	-	0.50	1	1	1	1	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.50	4	4	4	4	n	0.00	0	1	0	1	n	0.33	2	4	2	4	n	0.25	3	9	3	9	y	0.00	0	3	0	3	n	0.09	1	10	1	10	n	ENSMUSG00000024236.19	Svil	chr18	protein_coding	supervillin
known_NIR_9149	chr18	50055782;50059048	50058986;50064978	+	50055782	50064978	cassetteExon	ENSMUST00000180611.8	known	0.05	0.5	9	1;0	9	n	0.26	2.5	7	2;3	7	y	0.03	0.5	19	0;1	19	n	0.00	0.0	22	0;0	22	n	0.04	1.0	27	1;1	27	n	0.00	0.0	8	0;0	8	n	0.00	0.0	16	0;0	16	n	0.00	0.0	19	0;0	19	n	0.10	1.5	13	3;0	13	n	0.12	3.0	21	3;3	21	y	0.07	1.0	14	1;1	14	n	0.09	1.5	15	1;2	15	n	ENSMUSG00000037416.14	Dmxl1	chr18	protein_coding	Dmx-like 1
known_NIR_9150	chr18	5049494	5054018	+	5049494	5058125	A3SS	ENSMUST00000131210.8	known	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	18	0	18	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.42	5	7	5	7	y	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.00	0	23	0	23	n	ENSMUSG00000024236.19	Svil	chr18	protein_coding	supervillin
known_NIR_9151	chr18	5057439	5058125	+	5049494	5058125	A5SS	ENSMUST00000131210.8	known	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	18	0	18	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.68	15	7	15	7	y	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.06	1	17	1	17	n	0.00	0	10	0	10	n	0.00	0	23	0	23	n	ENSMUSG00000024236.19	Svil	chr18	protein_coding	supervillin
known_NIR_9152	chr18	5059369	5062162	+	5059369;5060610	5060515;5062162	ES	ENSMUST00000126977.8	known	1.00	8	0.0	8	0;0	n	1.00	4	0.0	4	0;0	n	1.00	15	0.0	15	0;0	n	1.00	5	0.0	5	0;0	n	1.00	29	0.0	29	0;0	n	1.00	12	0.0	12	0;0	n	0.51	12	11.5	12	10;13	y	1.00	16	0.0	16	0;0	n	1.00	16	0.0	16	0;0	n	1.00	18	0.0	18	0;0	n	1.00	13	0.0	13	0;0	n	1.00	23	0.0	23	0;0	n	ENSMUSG00000024236.19	Svil	chr18	protein_coding	supervillin
known_NIR_9153	chr18	53309559	53322664	+	53309559	53322727	A3SS	ENSMUST00000037850.7	known	0.00	0	69	0	69	n	0.00	0	42	0	42	n	0.01	1	102	1	102	n	0.00	0	89	0	89	n	0.00	0	104	0	104	n	0.03	1	39	1	39	n	0.00	0	93	0	93	n	0.00	0	76	0	76	n	0.00	0	75	0	75	n	0.01	2	142	2	142	y	0.00	0	76	0	76	n	0.00	0	100	0	100	n	ENSMUSG00000034484.9	Snx2	chr18	protein_coding	sorting nexin 2
known_NIR_9154	chr18	53322844	53330927	+	53322844	53327502	3pMXE	ENSMUST00000235943.2	known	0.03	2	67	2	67	y	0.00	0	44	0	44	n	0.00	0	82	0	82	n	0.00	0	53	0	53	n	0.01	1	90	1	90	n	0.00	0	32	0	32	n	0.03	2	56	2	56	y	0.00	0	45	0	45	n	0.02	1	53	1	53	n	0.01	1	120	1	120	n	0.00	0	55	0	55	n	0.01	1	92	1	92	n	ENSMUSG00000034484.9	Snx2	chr18	protein_coding	sorting nexin 2
known_NIR_9155	chr18	53322844	53330927	+	53322844;53327665	53327502;53330927	ES	ENSMUST00000037850.7	known	0.03	2	69.0	2	67;71	y	0.00	0	50.5	0	44;57	n	0.00	0	101.0	0	82;120	n	0.00	0	62.0	0	53;71	n	0.01	1	100.5	1	90;111	n	0.00	0	32.5	0	32;33	n	0.03	2	68.0	2	56;80	y	0.00	0	45.5	0	45;46	n	0.02	1	57.5	1	53;62	n	0.01	1	111.0	1	120;102	n	0.00	0	66.5	0	55;78	n	0.01	1	89.5	1	92;87	n	ENSMUSG00000034484.9	Snx2	chr18	protein_coding	sorting nexin 2
known_NIR_9156	chr18	53322844;53326840	53326819;53327502	+	53322844	53327502	cassetteExon	ENSMUST00000037850.7	known	0.00	0.0	67	0;0	67	n	0.02	1.0	44	1;1	44	n	0.00	0.0	82	0;0	82	n	0.00	0.0	53	0;0	53	n	0.00	0.0	90	0;0	90	n	0.00	0.0	32	0;0	32	n	0.02	1.0	56	1;1	56	n	0.00	0.0	45	0;0	45	n	0.04	2.0	53	2;2	53	y	0.00	0.0	120	0;0	120	n	0.02	1.0	55	1;1	55	n	0.00	0.0	92	0;0	92	n	ENSMUSG00000034484.9	Snx2	chr18	protein_coding	sorting nexin 2
known_NIR_9157	chr18	53473306	53473627	+	53473306	53516142	A3SS	ENSMUST00000165032.9	known	0.00	0	21	0	21	n	0.00	0	26	0	26	n	0.00	0	43	0	43	n	0.00	0	30	0	30	n	0.04	2	47	2	47	y	0.00	0	16	0	16	n	0.00	0	39	0	39	n	0.00	0	25	0	25	n	0.00	0	35	0	35	n	0.00	0	46	0	46	n	0.00	0	37	0	37	n	0.00	0	39	0	39	n	ENSMUSG00000024535.17	Snx24	chr18	protein_coding	sorting nexing 24
known_NIR_9158	chr18	54066617;54070020	54069925;54081120	+	54066617	54081120	cassetteExon	ENSMUST00000069597.8	known	0.07	3.5	47	1;6	47	n	0.02	1.0	50	1;1	50	n	0.07	6.5	83	4;9	83	y	0.05	3.0	62	4;2	62	y	0.07	4.5	63	3;6	63	y	0.09	4.5	43	4;5	43	y	0.04	3.5	81	5;2	81	y	0.03	1.5	56	2;1	56	n	0.03	2.0	59	2;2	59	y	0.03	2.5	70	3;2	70	y	0.06	4.0	61	6;2	61	y	0.03	2.0	67	2;2	67	y	ENSMUSG00000073563.4	Csnk1g3	chr18	protein_coding	casein kinase 1, gamma 3
known_NIR_9159	chr18	54081226	54086317	+	54081226	54081717	3pMXE	ENSMUST00000236399.2	known	0.84	69	13	69	13	y	0.92	88	8	88	8	y	0.83	139	29	139	29	y	0.92	82	7	82	7	y	0.83	122	25	122	25	y	0.82	69	15	69	15	y	0.80	113	28	113	28	y	0.85	78	14	78	14	y	0.92	87	8	87	8	y	0.94	109	7	109	7	y	0.89	104	13	104	13	y	0.86	117	19	117	19	y	ENSMUSG00000073563.4	Csnk1g3	chr18	protein_coding	casein kinase 1, gamma 3
known_NIR_9160	chr18	54081226	54086317	+	54081226;54081740	54081717;54086317	ES	ENSMUST00000069597.8	known	0.86	69	11.0	69	13;9	y	0.92	88	8.0	88	8;8	y	0.83	139	27.5	139	29;26	y	0.94	82	5.5	82	7;4	y	0.82	122	26.0	122	25;27	y	0.83	69	14.0	69	15;13	y	0.80	113	27.5	113	28;27	y	0.85	78	14.0	78	14;14	y	0.92	87	8.0	87	8;8	y	0.93	109	8.5	109	7;10	y	0.90	104	11.0	104	13;9	y	0.87	117	17.5	117	19;16	y	ENSMUSG00000073563.4	Csnk1g3	chr18	protein_coding	casein kinase 1, gamma 3
known_NIR_9161	chr18	56533647	56602605	+	56533647;56565429	56565191;56602605	ES	ENSMUST00000237355.2	known	0.81	23	5.5	23	0;11	n	0.75	20	6.5	20	0;13	n	0.61	38	24.0	38	1;47	n	0.87	58	9.0	58	1;17	n	0.63	48	28.5	48	1;56	n	0.36	12	21.0	12	0;42	n	0.68	42	20.0	42	0;40	n	0.61	27	17.5	27	3;32	y	0.84	39	7.5	39	2;13	y	0.73	62	22.5	62	1;44	n	0.70	39	16.5	39	1;32	n	0.82	55	12.0	55	0;24	n	ENSMUSG00000001700.11	Gramd3	chr18	protein_coding	GRAM domain containing 3
known_NIR_9162	chr18	56533647	56602605	+	56565429	56602605	5pMXE	ENSMUST00000070166.6	known	0.68	23	11	23	11	y	0.61	20	13	20	13	y	0.45	38	47	38	47	y	0.77	58	17	58	17	y	0.46	48	56	48	56	y	0.22	12	42	12	42	y	0.51	42	40	42	40	y	0.46	27	32	27	32	y	0.75	39	13	39	13	y	0.58	62	44	62	44	y	0.55	39	32	39	32	y	0.70	55	24	55	24	y	ENSMUSG00000001700.11	Gramd3	chr18	protein_coding	GRAM domain containing 3
known_NIR_9163	chr18	56671814	56675325	-	56671814	56675297	A5SS	ENSMUST00000174518.8	known	0.00	0	864	0	864	n	0.00	0	731	0	731	n	0.00	0	297	0	297	n	0.00	0	1092	0	1092	n	0.00	0	970	0	970	n	0.00	0	276	0	276	n	0.00	0	938	0	938	n	0.00	0	382	0	382	n	0.00	0	1021	0	1021	n	0.00	6	1472	6	1472	y	0.00	0	1164	0	1164	n	0.00	0	1480	0	1480	n	ENSMUSG00000053644.14	Aldh7a1	chr18	protein_coding	aldehyde dehydrogenase family 7, member A1
known_NIR_9164	chr18	56692359	56695105	-	56692359;56693901	56693848;56695105	ES	ENSMUST00000174518.8	known	0.01	4	649.0	4	717;581	y	0.00	2	525.0	2	593;457	y	0.00	0	257.5	0	279;236	n	0.00	2	910.5	2	997;824	y	0.00	4	917.0	4	985;849	y	0.00	1	222.0	1	246;198	n	0.00	1	725.0	1	809;641	n	0.00	1	382.0	1	422;342	n	0.00	0	812.5	0	873;752	n	0.01	7	1091.5	7	1216;967	y	0.00	3	847.0	3	952;742	y	0.00	2	1127.0	2	1262;992	y	ENSMUSG00000053644.14	Aldh7a1	chr18	protein_coding	aldehyde dehydrogenase family 7, member A1
known_NIR_9165	chr18	56706207	56708534	+	56695795	56708534	A5SS	ENSMUST00000130163.8	known	0.91	63	6	63	6	y	0.95	52	3	52	3	y	0.94	81	5	81	5	y	0.98	80	2	80	2	y	1.00	72	0	72	0	n	0.89	33	4	33	4	y	0.90	72	8	72	8	y	0.95	36	2	36	2	y	0.93	50	4	50	4	y	0.98	65	1	65	1	n	0.98	51	1	51	1	n	0.98	57	1	57	1	n	ENSMUSG00000008301.12	Phax	chr18	protein_coding	phosphorylated adaptor for RNA export
known_NIR_9166	chr18	57106556	57108382	-	57106556	57108406	A5SS	ENSMUST00000025488.15	known	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.25	2	6	2	6	n	0.13	2	13	2	13	y	0.25	2	6	2	6	n	0.22	4	14	4	14	y	0.25	1	3	1	3	n	0.29	2	5	2	5	n	0.22	2	7	2	7	n	0.25	1	3	1	3	n	0.00	0	5	0	5	n	ENSMUSG00000024592.16	C330018D20Rik	chr18	protein_coding	RIKEN cDNA C330018D20 gene
known_NIR_9167	chr18	57488712	57495505	+	57487963	57495505	A5SS	ENSMUST00000025490.10	known	0.00	0	29	0	29	n	0.00	0	26	0	26	n	0.00	0	73	0	73	n	0.00	0	42	0	42	n	0.02	1	56	1	56	n	0.00	0	28	0	28	n	0.00	0	37	0	37	n	0.05	2	35	2	35	y	0.00	0	26	0	26	n	0.00	0	52	0	52	n	0.00	0	16	0	16	n	0.00	0	24	0	24	n	ENSMUSG00000024594.10	Prrc1	chr18	protein_coding	proline-rich coiled-coil 1
known_NIR_9168	chr18	58792869	58804520	+	58792869;58804399	58804280;58804520	ES	ENSMUST00000025503.10	known	0.00	0	120.0	0	98;142	n	0.00	0	79.5	0	82;77	n	0.00	0	65.5	0	51;80	n	0.00	0	156.0	0	137;175	n	0.01	2	187.5	2	169;206	y	0.00	0	59.0	0	59;59	n	0.00	0	157.0	0	124;190	n	0.00	0	68.5	0	52;85	n	0.02	2	117.5	2	104;131	y	0.00	0	199.0	0	160;238	n	0.00	0	104.0	0	84;124	n	0.00	0	176.0	0	147;205	n	ENSMUSG00000024601.10	Isoc1	chr18	protein_coding	isochorismatase domain containing 1
known_NIR_9169	chr18	60509202	60522864	+	60515866	60522864	5pMXE	ENSMUST00000237185.2	known	0.02	6	237	6	237	y	0.02	3	169	3	169	y	0.01	4	418	4	418	y	0.00	2	461	2	461	y	0.01	4	501	4	501	y	0.01	1	157	1	157	n	0.00	1	379	1	379	n	0.00	0	242	0	242	n	0.01	3	304	3	304	y	0.01	6	433	6	433	y	0.01	3	230	3	230	y	0.05	18	355	18	355	y	ENSMUSG00000054072.13	Iigp1	chr18	protein_coding	interferon inducible GTPase 1
known_NIR_9170	chr18	6052923	6056979	-	6052923	6061847	A5SS	ENSMUST00000077128.13	known	0.78	7	2	7	2	n	0.46	6	7	6	7	y	0.80	4	1	4	1	n	1.00	6	0	6	0	n	0.50	5	5	5	5	y	0.50	2	2	2	2	n	0.30	3	7	3	7	y	0.83	5	1	5	1	n	1.00	6	0	6	0	n	0.70	14	6	14	6	y	1.00	6	0	6	0	n	0.62	10	6	10	6	y	ENSMUSG00000041225.17	Arhgap12	chr18	protein_coding	Rho GTPase activating protein 12
known_NIR_9171	chr18	6052923	6061847	-	6052923;6057591	6057517;6061847	ES	ENSMUST00000182066.8	known	0.11	2	16.5	2	14;19	y	0.44	7	9.0	7	4;14	y	0.03	1	32.0	1	30;34	n	0.00	0	12.5	0	11;14	n	0.17	5	24.5	5	20;29	y	0.15	2	11.0	2	7;15	y	0.32	7	15.0	7	14;16	y	0.04	1	22.5	1	15;30	n	0.00	0	14.5	0	10;19	n	0.17	6	29.5	6	28;31	y	0.00	0	16.5	0	14;19	n	0.19	6	25.5	6	17;34	y	ENSMUSG00000041225.17	Arhgap12	chr18	protein_coding	Rho GTPase activating protein 12
known_NIR_9172	chr18	6052923	6061847	-	6057591	6061847	3pMXE	ENSMUST00000182614.8	known	0.10	2	19	2	19	y	0.33	7	14	7	14	y	0.03	1	34	1	34	n	0.00	0	14	0	14	n	0.15	5	29	5	29	y	0.12	2	15	2	15	y	0.30	7	16	7	16	y	0.03	1	30	1	30	n	0.00	0	19	0	19	n	0.16	6	31	6	31	y	0.00	0	19	0	19	n	0.15	6	34	6	34	y	ENSMUSG00000041225.17	Arhgap12	chr18	protein_coding	Rho GTPase activating protein 12
known_NIR_9173	chr18	6052923;6056993	6056979;6057517	-	6052923	6057517	cassetteExon	ENSMUST00000182066.8	known	0.35	7.5	14	7;8	14	y	0.62	6.5	4	6;7	4	y	0.10	3.5	30	4;3	30	y	0.41	7.5	11	6;9	11	y	0.20	5.0	20	5;5	20	y	0.26	2.5	7	2;3	7	y	0.28	5.5	14	3;8	14	y	0.21	4.0	15	5;3	15	y	0.33	5.0	10	6;4	10	y	0.30	12.0	28	14;10	28	y	0.30	6.0	14	6;6	14	y	0.41	12.0	17	10;14	17	y	ENSMUSG00000041225.17	Arhgap12	chr18	protein_coding	Rho GTPase activating protein 12
known_NIR_9174	chr18	6064421;6065845	6065705;6069831	-	6064421	6069831	cassetteExon	ENSMUST00000182066.8	known	0.71	10.0	4	17;3	4	y	0.43	7.5	10	9;6	10	y	0.55	14.5	12	14;15	12	y	0.55	16.0	13	11;21	13	y	0.51	18.0	17	17;19	17	y	0.50	5.0	5	5;5	5	y	0.49	10.5	11	7;14	11	y	0.37	7.0	12	5;9	12	y	0.46	12.0	14	8;16	14	y	0.60	15.0	10	16;14	10	y	0.42	6.5	9	6;7	9	y	0.56	15.0	12	21;9	12	y	ENSMUSG00000041225.17	Arhgap12	chr18	protein_coding	Rho GTPase activating protein 12
known_NIR_9175	chr18	60659437	60659673	+	60659437	60667665	A3SS	ENSMUST00000223984.2	known	0.23	6	20	6	20	y	0.20	3	12	3	12	y	0.18	6	27	6	27	y	0.28	12	31	12	31	y	0.48	27	29	27	29	y	0.16	3	16	3	16	y	0.30	11	26	11	26	y	0.42	8	11	8	11	y	0.47	8	9	8	9	y	0.28	12	31	12	31	y	0.45	9	11	9	11	y	0.39	13	20	13	20	y	ENSMUSG00000024603.9	Dctn4	chr18	protein_coding	dynactin 4
known_NIR_9176	chr18	6070091	6073211	-	6070091	6111685	A5SS	ENSMUST00000182066.8	known	0.00	0	9	0	9	n	0.11	1	8	1	8	n	0.00	0	15	0	15	n	0.10	2	19	2	19	y	0.00	0	36	0	36	n	0.00	0	26	0	26	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	17	0	17	n	0.00	0	21	0	21	n	0.12	2	14	2	14	y	0.00	0	25	0	25	n	ENSMUSG00000041225.17	Arhgap12	chr18	protein_coding	Rho GTPase activating protein 12
known_NIR_9177	chr18	6070091	6135804	-	6070091	6111685	5pMXE	ENSMUST00000182066.8	known	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.12	2	15	2	15	y	0.05	1	19	1	19	n	0.10	4	36	4	36	y	0.04	1	26	1	26	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	17	0	17	n	0.09	2	21	2	21	y	0.12	2	14	2	14	y	0.04	1	25	1	25	n	ENSMUSG00000041225.17	Arhgap12	chr18	protein_coding	Rho GTPase activating protein 12
known_NIR_9178	chr18	60729560	60735305	-	60729560	60735185	A5SS	ENSMUST00000097566.10	known	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.28	9	23	9	23	y	0.00	0	4	0	4	n	0.29	2	5	2	5	n	0.45	5	6	5	6	y	0.00	0	6	0	6	n	0.11	1	8	1	8	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000043079.18	Synpo	chr18	protein_coding	synaptopodin
known_NIR_9179	chr18	60737562	60742983	-	60737562	60762524	A5SS	ENSMUST00000130360.2	known	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.12	1	7	1	7	n	0.67	2	1	2	1	n	0.18	2	9	2	9	y	0.40	2	3	2	3	n	0.50	4	4	4	4	n	0.50	2	2	2	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	1.00	2	0	2	0	n	0.00	0	1	0	1	n	ENSMUSG00000043079.18	Synpo	chr18	protein_coding	synaptopodin
known_NIR_9180	chr18	60737562	60762524	-	60737562	60757243	5pMXE	ENSMUST00000097566.10	known	0.33	1	2	1	2	n	0.33	1	2	1	2	n	0.50	7	7	7	7	y	0.25	1	3	1	3	n	0.90	9	1	9	1	n	0.75	3	1	3	1	n	0.50	4	4	4	4	n	0.67	2	1	2	1	n	0.75	3	1	3	1	n	0.67	2	1	2	1	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	ENSMUSG00000043079.18	Synpo	chr18	protein_coding	synaptopodin
known_NIR_9181	chr18	60846704	60881383	-	60846704	60860553	5pMXE	ENSMUST00000235795.2	known	0.25	1	3	1	3	n	0.43	3	4	3	4	n	0.26	9	25	9	25	y	0.32	7	15	7	15	y	0.32	7	15	7	15	y	0.14	3	19	3	19	y	0.40	6	9	6	9	y	0.12	4	29	4	29	y	0.14	1	6	1	6	n	0.46	11	13	11	13	y	0.31	4	9	4	9	y	0.39	7	11	7	11	y	ENSMUSG00000054008.10	Ndst1	chr18	protein_coding	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
known_NIR_9182	chr18	60846704	60881383	-	60846704	60881573	A5SS	ENSMUST00000237783.2	known	0.20	1	4	1	4	n	1.00	3	0	3	0	n	0.90	9	1	9	1	n	0.50	7	7	7	7	y	0.64	7	4	7	4	y	0.33	3	6	3	6	n	0.50	6	6	6	6	y	0.36	4	7	4	7	y	0.50	1	1	1	1	n	0.69	11	5	11	5	y	0.50	4	4	4	4	n	0.58	7	5	7	5	y	ENSMUSG00000054008.10	Ndst1	chr18	protein_coding	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
known_NIR_9183	chr18	60846704	60881573	-	60846704	60860553	5pMXE	ENSMUST00000235795.2	known	0.57	4	3	4	3	n	0.00	0	4	0	4	n	0.04	1	25	1	25	n	0.32	7	15	7	15	y	0.21	4	15	4	15	y	0.24	6	19	6	19	y	0.40	6	9	6	9	y	0.19	7	29	7	29	y	0.14	1	6	1	6	n	0.28	5	13	5	13	y	0.31	4	9	4	9	y	0.31	5	11	5	11	y	ENSMUSG00000054008.10	Ndst1	chr18	protein_coding	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
known_NIR_9184	chr18	60880293	60909473	+	60907758	60909473	5pMXE	ENSMUST00000025511.11	known	0.00	3	1039	3	1039	y	0.01	6	1068	6	1068	y	0.01	15	1639	15	1639	y	0.00	4	1028	4	1028	y	0.00	7	1438	7	1438	y	0.00	3	844	3	844	y	0.00	5	1592	5	1592	y	0.00	2	828	2	828	y	0.01	5	978	5	978	y	0.01	8	1455	8	1455	y	0.00	4	1214	4	1214	y	0.00	4	1276	4	1276	y	ENSMUSG00000024608.12	Rps14	chr18	protein_coding	ribosomal protein S14
known_NIR_9185	chr18	60880293	60909473	+	60907853	60909473	5pMXE	ENSMUST00000118551.8	known	0.43	3	4	3	4	n	0.67	6	3	6	3	n	0.65	15	8	15	8	y	1.00	4	0	4	0	n	0.54	7	6	7	6	y	0.60	3	2	3	2	n	0.62	5	3	5	3	n	0.67	2	1	2	1	n	0.62	5	3	5	3	n	0.67	8	4	8	4	y	0.44	4	5	4	5	n	0.44	4	5	4	5	n	ENSMUSG00000024608.12	Rps14	chr18	protein_coding	ribosomal protein S14
known_NIR_9186	chr18	60880293;60907758	60907582;60909473	+	60880293	60909473	cassetteExon	ENSMUST00000236652.2	known	0.99	519.5	3	0;1039	3	n	0.99	534.0	6	0;1068	6	n	0.98	819.5	15	0;1639	15	n	0.99	514.0	4	0;1028	4	n	0.99	720.0	7	2;1438	7	y	0.99	422.0	3	0;844	3	n	0.99	798.5	5	5;1592	5	y	1.00	414.0	2	0;828	2	n	0.99	489.0	5	0;978	5	n	0.99	727.5	8	0;1455	8	n	0.99	607.0	4	0;1214	4	n	0.99	638.0	4	0;1276	4	n	ENSMUSG00000024608.12	Rps14	chr18	protein_coding	ribosomal protein S14
known_NIR_9187	chr18	60880293;60907853	60907582;60909473	+	60880293	60909473	cassetteExon	ENSMUST00000236652.2	known	0.40	2.0	3	0;4	3	n	0.20	1.5	6	0;3	6	n	0.21	4.0	15	0;8	15	n	0.00	0.0	4	0;0	4	n	0.36	4.0	7	2;6	7	y	0.25	1.0	3	0;2	3	n	0.44	4.0	5	5;3	5	y	0.20	0.5	2	0;1	2	n	0.23	1.5	5	0;3	5	n	0.20	2.0	8	0;4	8	n	0.38	2.5	4	0;5	4	n	0.38	2.5	4	0;5	4	n	ENSMUSG00000024608.12	Rps14	chr18	protein_coding	ribosomal protein S14
known_NIR_9188	chr18	60907853	60909473	+	60907758	60909473	A5SS	ENSMUST00000235966.2	known	0.00	4	1039	4	1039	y	0.00	3	1068	3	1068	y	0.00	8	1639	8	1639	y	0.00	0	1028	0	1028	n	0.00	6	1438	6	1438	y	0.00	2	844	2	844	y	0.00	3	1592	3	1592	y	0.00	1	828	1	828	n	0.00	3	978	3	978	y	0.00	4	1455	4	1455	y	0.00	5	1214	5	1214	y	0.00	5	1276	5	1276	y	ENSMUSG00000024608.12	Rps14	chr18	protein_coding	ribosomal protein S14
known_NIR_9189	chr18	60908389	60909473	+	60907758	60909473	A5SS	ENSMUST00000235966.2	known	0.00	2	1039	2	1039	y	0.00	0	1068	0	1068	n	0.00	1	1639	1	1639	n	0.00	0	1028	0	1028	n	0.00	0	1438	0	1438	n	0.00	1	844	1	844	n	0.00	0	1592	0	1592	n	0.00	0	828	0	828	n	0.00	2	978	2	978	y	0.00	0	1455	0	1455	n	0.00	0	1214	0	1214	n	0.00	0	1276	0	1276	n	ENSMUSG00000024608.12	Rps14	chr18	protein_coding	ribosomal protein S14
known_NIR_9190	chr18	60908814	60909473	+	60907758	60909473	A5SS	ENSMUST00000235966.2	known	0.00	0	1039	0	1039	n	0.00	0	1068	0	1068	n	0.00	0	1639	0	1639	n	0.00	3	1028	3	1028	y	0.00	0	1438	0	1438	n	0.00	0	844	0	844	n	0.00	0	1592	0	1592	n	0.00	0	828	0	828	n	0.00	0	978	0	978	n	0.00	0	1455	0	1455	n	0.00	0	1214	0	1214	n	0.00	0	1276	0	1276	n	ENSMUSG00000024608.12	Rps14	chr18	protein_coding	ribosomal protein S14
known_NIR_9191	chr18	60943490	60944931	+	60943490;60944557	60944366;60944931	ES	ENSMUST00000097563.9	known	0.78	186	53.0	186	58;48	y	0.80	103	25.5	103	23;28	y	0.82	72	15.5	72	21;10	y	0.80	84	21.0	84	25;17	y	0.84	87	16.0	87	14;18	y	0.87	26	4.0	26	4;4	y	0.79	105	27.5	105	32;23	y	0.84	36	7.0	36	3;11	y	0.80	102	25.5	102	27;24	y	0.79	156	42.0	156	48;36	y	0.82	172	37.5	172	45;30	y	0.79	190	51.5	190	59;44	y	ENSMUSG00000024610.16	Cd74	chr18	protein_coding	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)
known_NIR_9192	chr18	60956062	60961437	-	60956062;60960519	60960412;60961437	ES	ENSMUST00000175934.8	known	0.00	0	4.5	0	4;5	n	0.89	4	0.5	4	0;1	n	0.75	6	2.0	6	2;2	y	0.50	4	4.0	4	3;5	y	0.67	9	4.5	9	5;4	y	0.89	4	0.5	4	1;0	n	0.71	6	2.5	6	3;2	y	0.67	3	1.5	3	2;1	n	0.72	9	3.5	9	2;5	y	0.63	6	3.5	6	7;0	n	0.70	8	3.5	8	5;2	y	0.47	4	4.5	4	5;4	y	ENSMUSG00000024613.17	Tcof1	chr18	protein_coding	treacle ribosome biogenesis factor 1
known_NIR_9193	chr18	60965067	60965499	-	60965067;60965381	60965238;60965499	ES	ENSMUST00000175934.8	known	0.25	2	6.0	2	9;3	y	0.17	1	5.0	1	2;8	n	0.20	2	8.0	2	10;6	y	0.25	2	6.0	2	2;10	y	0.29	4	10.0	4	11;9	y	0.00	0	5.0	0	6;4	n	0.11	1	8.0	1	8;8	n	0.00	0	1.5	0	0;3	n	0.00	0	5.0	0	6;4	n	0.12	1	7.5	1	8;7	n	0.00	0	6.0	0	5;7	n	0.00	0	6.0	0	2;10	n	ENSMUSG00000024613.17	Tcof1	chr18	protein_coding	treacle ribosome biogenesis factor 1
known_NIR_9194	chr18	6115850	6135804	-	6070091	6135804	A3SS	ENSMUST00000182614.8	known	1.00	11	0	11	0	n	1.00	5	0	5	0	n	0.82	9	2	9	2	y	0.92	11	1	11	1	n	0.84	21	4	21	4	y	0.89	8	1	8	1	n	1.00	11	0	11	0	n	1.00	23	0	23	0	n	1.00	4	0	4	0	n	0.85	11	2	11	2	y	0.86	12	2	12	2	y	0.95	18	1	18	1	n	ENSMUSG00000041225.17	Arhgap12	chr18	protein_coding	Rho GTPase activating protein 12
known_NIR_9195	chr18	61269432	61273863	-	61269432	61270475	5pMXE	ENSMUST00000237101.2	known	0.00	0	14	0	14	n	0.14	3	18	3	18	y	0.06	2	30	2	30	y	0.00	0	18	0	18	n	0.03	1	37	1	37	n	0.00	0	23	0	23	n	0.00	0	20	0	20	n	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.00	0	25	0	25	n	0.00	0	17	0	17	n	0.00	0	21	0	21	n	ENSMUSG00000024622.9	Hmgxb3	chr18	protein_coding	HMG box domain containing 3
known_NIR_9196	chr18	61269432	61273863	-	61269432;61270694	61270475;61273863	ES	ENSMUST00000091884.6	known	0.00	0	18.0	0	14;22	n	0.13	3	20.5	3	18;23	y	0.06	2	33.5	2	30;37	y	0.00	0	19.0	0	18;20	n	0.03	1	32.5	1	37;28	n	0.00	0	15.0	0	23;7	n	0.00	0	20.0	0	20;20	n	0.00	0	13.0	0	12;14	n	0.00	0	10.0	0	11;9	n	0.00	0	23.0	0	25;21	n	0.00	0	18.5	0	17;20	n	0.00	0	17.5	0	21;14	n	ENSMUSG00000024622.9	Hmgxb3	chr18	protein_coding	HMG box domain containing 3
known_NIR_9197	chr18	61657074	61669535	-	61657074	61669462	A5SS	ENSMUST00000171629.3	known	0.36	4	7	4	7	y	1.00	2	0	2	0	n	0.00	0	1	0	1	n	0.27	4	11	4	11	y	0.45	5	6	5	6	y	1.00	1	0	1	0	n	0.56	5	4	5	4	n	0.00	0	1	0	1	n	0.50	3	3	3	3	n	0.00	0	2	0	2	n	1.00	3	0	3	0	n	0.71	5	2	5	2	n	ENSMUSG00000045094.9	Arhgef37	chr18	protein_coding	Rho guanine nucleotide exchange factor (GEF) 37
known_NIR_9198	chr18	61702633;61705028	61704945;61708481	+	61702633	61708481	cassetteExon	ENSMUST00000165123.8	known	0.08	8.0	96	7;9	96	y	0.13	11.0	71	12;10	71	y	0.17	32.0	161	23;41	161	y	0.07	9.0	118	8;10	118	y	0.12	21.0	147	15;27	147	y	0.19	22.0	95	17;27	95	y	0.14	22.5	133	16;29	133	y	0.16	17.5	93	13;22	93	y	0.11	13.0	102	12;14	102	y	0.08	13.0	153	12;14	153	y	0.07	7.5	98	7;8	98	y	0.12	18.5	141	13;24	141	y	ENSMUSG00000024576.15	Csnk1a1	chr18	protein_coding	casein kinase 1, alpha 1
known_NIR_9199	chr18	61713522	61715107	+	61713522	61720497	A3SS	ENSMUST00000165123.8	known	0.00	0	79	0	79	n	0.00	0	70	0	70	n	0.01	2	186	2	186	y	0.00	0	98	0	98	n	0.01	1	136	1	136	n	0.03	3	98	3	98	y	0.01	1	146	1	146	n	0.02	2	94	2	94	y	0.01	1	88	1	88	n	0.00	0	131	0	131	n	0.00	0	84	0	84	n	0.02	2	126	2	126	y	ENSMUSG00000024576.15	Csnk1a1	chr18	protein_coding	casein kinase 1, alpha 1
known_NIR_9200	chr18	61713558	61715107	+	61713558	61720497	A3SS	ENSMUST00000165721.8	known	0.00	0	64	0	64	n	0.00	0	55	0	55	n	0.00	0	84	0	84	n	0.00	0	61	0	61	n	0.00	0	87	0	87	n	0.05	2	40	2	40	y	0.03	2	74	2	74	y	0.00	0	46	0	46	n	0.02	1	40	1	40	n	0.04	4	104	4	104	y	0.04	2	49	2	49	y	0.04	3	69	3	69	y	ENSMUSG00000024576.15	Csnk1a1	chr18	protein_coding	casein kinase 1, alpha 1
known_NIR_9201	chr18	61713558	61720497	+	61713522	61720497	A5SS	ENSMUST00000165123.8	known	0.45	64	79	64	79	y	0.44	55	70	55	70	y	0.31	84	186	84	186	y	0.38	61	98	61	98	y	0.39	87	136	87	136	y	0.29	40	98	40	98	y	0.34	74	146	74	146	y	0.33	46	94	46	94	y	0.31	40	88	40	88	y	0.44	104	131	104	131	y	0.37	49	84	49	84	y	0.35	69	126	69	126	y	ENSMUSG00000024576.15	Csnk1a1	chr18	protein_coding	casein kinase 1, alpha 1
known_NIR_9202	chr18	61851705	61851825	-	61849198	61851825	A3SS	ENSMUST00000062991.9	known	0.00	0	61	0	61	n	0.00	0	63	0	63	n	0.03	5	159	5	159	y	0.03	2	66	2	66	y	0.00	0	108	0	108	n	0.00	0	69	0	69	n	0.00	0	128	0	128	n	0.00	0	87	0	87	n	0.00	0	66	0	66	n	0.01	1	150	1	150	n	0.03	2	78	2	78	y	0.00	0	127	0	127	n	ENSMUSG00000024580.9	Grpel2	chr18	protein_coding	GrpE-like 2, mitochondrial
known_NIR_9203	chr18	61851906	61852082	-	61851906	61852773	A5SS	ENSMUST00000062991.9	known	0.25	14	41	14	41	y	0.22	11	39	11	39	y	0.17	25	126	25	126	y	0.16	9	48	9	48	y	0.15	13	76	13	76	y	0.14	10	64	10	64	y	0.18	26	121	26	121	y	0.19	13	56	13	56	y	0.18	13	58	13	58	y	0.21	27	104	27	104	y	0.14	10	63	10	63	y	0.30	30	71	30	71	y	ENSMUSG00000024580.9	Grpel2	chr18	protein_coding	GrpE-like 2, mitochondrial
known_NIR_9204	chr18	62648618	62650035	-	62648615	62650035	A3SS	ENSMUST00000048688.8	known	0.21	9	33	9	33	y	0.15	2	11	2	11	y	0.30	19	45	19	45	y	0.18	9	40	9	40	y	0.28	19	49	19	49	y	0.31	10	22	10	22	y	0.32	18	39	18	39	y	0.04	1	25	1	25	n	0.31	11	25	11	25	y	0.24	14	45	14	45	y	0.29	11	27	11	27	y	0.20	9	37	9	37	y	ENSMUSG00000042211.8	Fbxo38	chr18	protein_coding	F-box protein 38
known_NIR_9205	chr18	63115774	63116431	+	63115774	63116445	A3SS	ENSMUST00000025474.14	known	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.00	0	17	0	17	n	0.05	1	21	1	21	n	0.00	0	33	0	33	n	0.09	1	10	1	10	n	0.12	3	21	3	21	y	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.04	1	24	1	24	n	0.00	0	7	0	7	n	0.06	1	17	1	17	n	ENSMUSG00000024581.14	Napg	chr18	protein_coding	N-ethylmaleimide sensitive fusion protein attachment protein gamma
known_NIR_9206	chr18	63117194	63119250	+	63117141	63119250	A5SS	ENSMUST00000025474.14	known	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.00	0	25	0	25	n	0.08	3	35	3	35	y	0.00	0	16	0	16	n	0.09	2	21	2	21	y	0.00	0	9	0	9	n	0.08	1	12	1	12	n	0.00	0	23	0	23	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	ENSMUSG00000024581.14	Napg	chr18	protein_coding	N-ethylmaleimide sensitive fusion protein attachment protein gamma
known_NIR_9207	chr18	63797403	63798809	-	63797403	63798723	A5SS&ES	ENSMUST00000025476.4	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	8	4	8	4	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000024583.4	Txnl1	chr18	protein_coding	thioredoxin-like 1
known_NIR_9208	chr18	63797403	63798809	-	63797403	63804653	A5SS	ENSMUST00000237004.2	known	0.00	0	513	0	513	n	0.00	0	547	0	547	n	0.00	0	672	0	672	n	0.00	0	461	0	461	n	0.00	0	624	0	624	n	0.00	0	342	0	342	n	0.01	8	614	8	614	y	0.00	0	295	0	295	n	0.00	0	424	0	424	n	0.00	0	521	0	521	n	0.00	0	648	0	648	n	0.00	1	640	1	640	n	ENSMUSG00000024583.4	Txnl1	chr18	protein_coding	thioredoxin-like 1
known_NIR_9209	chr18	63797403;63798765	63798723;63804653	-	63797403	63804653	cassetteExon	ENSMUST00000237004.2	known	0.00	0.0	513	0;0	513	n	0.00	0.0	547	0;0	547	n	0.00	0.0	672	0;0	672	n	0.00	0.0	461	0;0	461	n	0.00	0.0	624	0;0	624	n	0.00	0.0	342	0;0	342	n	0.01	5.0	614	4;6	614	y	0.00	0.0	295	0;0	295	n	0.00	0.0	424	0;0	424	n	0.00	0.0	521	0;0	521	n	0.00	0.0	648	0;0	648	n	0.00	0.0	640	0;0	640	n	ENSMUSG00000024583.4	Txnl1	chr18	protein_coding	thioredoxin-like 1
known_NIR_9210	chr18	63799630	63804653	-	63797403	63804653	A3SS	ENSMUST00000237004.2	known	0.00	0	513	0	513	n	0.00	0	547	0	547	n	0.00	0	672	0	672	n	0.00	0	461	0	461	n	0.00	0	624	0	624	n	0.00	0	342	0	342	n	0.02	10	614	10	614	y	0.00	0	295	0	295	n	0.00	0	424	0	424	n	0.00	0	521	0	521	n	0.00	0	648	0	648	n	0.00	0	640	0	640	n	ENSMUSG00000024583.4	Txnl1	chr18	protein_coding	thioredoxin-like 1
known_NIR_9211	chr18	63799630	63804653	-	63798765	63804653	A3SS	ENSMUST00000025476.4	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.62	10	6	10	6	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024583.4	Txnl1	chr18	protein_coding	thioredoxin-like 1
known_NIR_9212	chr18	63815378	63841515	-	63815378	63825147	5pMXE	ENSMUST00000237004.2	known	0.00	0	235	0	235	n	0.00	0	166	0	166	n	0.00	0	352	0	352	n	0.00	0	245	0	245	n	0.00	0	317	0	317	n	0.00	0	165	0	165	n	0.00	1	253	1	253	n	0.01	2	152	2	152	y	0.00	0	209	0	209	n	0.00	0	254	0	254	n	0.00	0	250	0	250	n	0.00	0	277	0	277	n	ENSMUSG00000024583.4	Txnl1	chr18	protein_coding	thioredoxin-like 1
known_NIR_9213	chr18	6441243	6441802	-	6441243	6448905	A5SS	ENSMUST00000115870.9	known	0.21	3	11	3	11	y	0.09	1	10	1	10	n	0.00	0	23	0	23	n	0.08	1	12	1	12	n	0.08	2	23	2	23	y	0.00	0	11	0	11	n	0.15	3	17	3	17	y	0.00	0	11	0	11	n	0.09	1	10	1	10	n	0.21	5	19	5	19	y	0.11	1	8	1	8	n	0.29	9	22	9	22	y	ENSMUSG00000024240.14	Epc1	chr18	protein_coding	enhancer of polycomb homolog 1
known_NIR_9214	chr18	64594756	64595178	-	64594662	64595178	A3SS	ENSMUST00000235766.3	known	1.00	292	0	292	0	n	1.00	284	0	284	0	n	0.99	226	2	226	2	y	1.00	343	0	343	0	n	1.00	392	0	392	0	n	1.00	135	0	135	0	n	1.00	368	1	368	1	n	1.00	195	0	195	0	n	1.00	339	0	339	0	n	1.00	465	0	465	0	n	1.00	308	0	308	0	n	1.00	472	1	472	1	n	ENSMUSG00000024588.11	Fech	chr18	protein_coding	ferrochelatase
known_NIR_9215	chr18	64597255	64603753	-	64597255;64600905	64600799;64603753	ES	ENSMUST00000235766.3	known	0.01	3	266.5	3	274;259	y	0.02	4	255.0	4	266;244	y	0.02	4	223.0	4	228;218	y	0.00	1	317.5	1	305;330	n	0.02	9	408.0	9	386;430	y	0.01	2	161.0	2	167;155	y	0.01	3	342.5	3	328;357	y	0.01	3	201.5	3	205;198	y	0.02	7	284.0	7	293;275	y	0.01	6	492.0	6	509;475	y	0.01	3	323.0	3	316;330	y	0.01	5	437.5	5	418;457	y	ENSMUSG00000024588.11	Fech	chr18	protein_coding	ferrochelatase
known_NIR_9216	chr18	64597255	64603753	-	64600905	64603753	3pMXE	ENSMUST00000237891.2	known	0.01	3	259	3	259	y	0.02	4	244	4	244	y	0.02	4	218	4	218	y	0.00	1	330	1	330	n	0.02	9	430	9	430	y	0.01	2	155	2	155	y	0.01	3	357	3	357	y	0.01	3	198	3	198	y	0.02	7	275	7	275	y	0.01	6	475	6	475	y	0.01	3	330	3	330	y	0.01	5	457	5	457	y	ENSMUSG00000024588.11	Fech	chr18	protein_coding	ferrochelatase
known_NIR_9217	chr18	64611841	64612216	-	64611841	64616405	A5SS	ENSMUST00000235766.3	known	0.03	7	197	7	197	y	0.10	15	136	15	136	y	0.17	26	123	26	123	y	0.06	16	252	16	252	y	0.07	22	276	22	276	y	0.03	3	86	3	86	y	0.05	13	249	13	249	y	0.07	12	149	12	149	y	0.08	16	174	16	174	y	0.07	22	296	22	296	y	0.08	15	177	15	177	y	0.13	45	295	45	295	y	ENSMUSG00000024588.11	Fech	chr18	protein_coding	ferrochelatase
known_NIR_9218	chr18	64611841	64621972	-	64611841	64612216	5pMXE	ENSMUST00000237717.2	known	0.22	2	7	2	7	n	0.00	0	15	0	15	n	0.10	3	26	3	26	y	0.11	2	16	2	16	y	0.00	0	22	0	22	n	0.25	1	3	1	3	n	0.07	1	13	1	13	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.04	1	22	1	22	n	0.00	0	15	0	15	n	0.02	1	45	1	45	n	ENSMUSG00000024588.11	Fech	chr18	protein_coding	ferrochelatase
known_NIR_9219	chr18	64611841	64621972	-	64611841	64616405	A5SS&ES	ENSMUST00000237358.2	known	0.01	2	197	2	197	y	0.00	0	136	0	136	n	0.02	3	123	3	123	y	0.01	2	252	2	252	y	0.00	0	276	0	276	n	0.01	1	86	1	86	n	0.00	1	249	1	249	n	0.00	0	149	0	149	n	0.00	0	174	0	174	n	0.00	1	296	1	296	n	0.00	0	177	0	177	n	0.00	1	295	1	295	n	ENSMUSG00000024588.11	Fech	chr18	protein_coding	ferrochelatase
known_NIR_9220	chr18	64611841	64621972	-	64611841;64616528	64616405;64621972	ES	ENSMUST00000235766.3	known	0.01	2	156.5	2	197;116	y	0.00	0	115.5	0	136;95	n	0.02	3	118.0	3	123;113	y	0.01	2	238.0	2	252;224	y	0.00	0	242.5	0	276;209	n	0.01	1	79.0	1	86;72	n	0.00	1	213.5	1	249;178	n	0.00	0	132.0	0	149;115	n	0.00	0	158.5	0	174;143	n	0.00	1	273.0	1	296;250	n	0.00	0	154.5	0	177;132	n	0.00	1	245.5	1	295;196	n	ENSMUSG00000024588.11	Fech	chr18	protein_coding	ferrochelatase
known_NIR_9221	chr18	64611841	64621972	-	64616528	64621972	3pMXE	ENSMUST00000235843.2	known	0.02	2	116	2	116	y	0.00	0	95	0	95	n	0.03	3	113	3	113	y	0.01	2	224	2	224	y	0.00	0	209	0	209	n	0.01	1	72	1	72	n	0.01	1	178	1	178	n	0.00	0	115	0	115	n	0.00	0	143	0	143	n	0.00	1	250	1	250	n	0.00	0	132	0	132	n	0.01	1	196	1	196	n	ENSMUSG00000024588.11	Fech	chr18	protein_coding	ferrochelatase
known_NIR_9222	chr18	64616528	64621821	-	64616528	64621972	A5SS	ENSMUST00000235766.3	known	0.00	0	116	0	116	n	0.00	0	95	0	95	n	0.03	4	113	4	113	y	0.01	2	224	2	224	y	0.01	2	209	2	209	y	0.00	0	72	0	72	n	0.01	2	178	2	178	y	0.00	0	115	0	115	n	0.01	1	143	1	143	n	0.01	2	250	2	250	y	0.00	0	132	0	132	n	0.02	3	196	3	196	y	ENSMUSG00000024588.11	Fech	chr18	protein_coding	ferrochelatase
known_NIR_9223	chr18	6462991	6490463	-	6462991	6515865	A5SS	ENSMUST00000115870.9	known	0.90	9	1	9	1	n	1.00	8	0	8	0	n	0.79	15	4	15	4	y	1.00	9	0	9	0	n	0.94	17	1	17	1	n	0.91	10	1	10	1	n	1.00	13	0	13	0	n	0.89	17	2	17	2	y	0.83	5	1	5	1	n	0.85	11	2	11	2	y	0.92	12	1	12	1	n	0.77	10	3	10	3	y	ENSMUSG00000024240.14	Epc1	chr18	protein_coding	enhancer of polycomb homolog 1
known_NIR_9224	chr18	64644969	64645055	-	64644948	64645055	A3SS	ENSMUST00000237400.2	known	0.00	0	184	0	184	n	0.00	0	141	0	141	n	0.00	2	494	2	494	y	0.00	1	217	1	217	n	0.00	0	314	0	314	n	0.01	2	233	2	233	y	0.00	0	210	0	210	n	0.00	1	247	1	247	n	0.00	0	136	0	136	n	0.00	0	229	0	229	n	0.00	0	140	0	140	n	0.00	1	253	1	253	n	ENSMUSG00000024587.11	Nars	chr18	protein_coding	asparaginyl-tRNA synthetase
known_NIR_9225	chr18	64645120	64649487	-	64645120	64648397	A5SS&ES	ENSMUST00000235325.2	known	0.00	0	240	0	240	n	0.00	0	153	0	153	n	0.00	0	632	0	632	n	0.01	2	267	2	267	y	0.00	0	363	0	363	n	0.00	1	258	1	258	n	0.00	0	254	0	254	n	0.00	0	253	0	253	n	0.00	0	186	0	186	n	0.00	0	260	0	260	n	0.00	0	157	0	157	n	0.00	0	301	0	301	n	ENSMUSG00000024587.11	Nars	chr18	protein_coding	asparaginyl-tRNA synthetase
known_NIR_9226	chr18	64645120	64649487	-	64645120;64648476	64648397;64649487	ES	ENSMUST00000236873.2	known	0.00	0	149.0	0	240;58	n	0.00	0	96.0	0	153;39	n	0.00	0	406.5	0	632;181	n	0.01	2	187.0	2	267;107	y	0.00	0	237.0	0	363;111	n	0.01	1	168.5	1	258;79	n	0.00	0	166.0	0	254;78	n	0.00	0	158.5	0	253;64	n	0.00	0	115.0	0	186;44	n	0.00	0	164.0	0	260;68	n	0.00	0	100.5	0	157;44	n	0.00	0	191.5	0	301;82	n	ENSMUSG00000024587.11	Nars	chr18	protein_coding	asparaginyl-tRNA synthetase
known_NIR_9227	chr18	64645120	64649487	-	64645120;64648479	64648397;64649487	ES	ENSMUST00000237400.2	known	0.00	0	174.0	0	240;108	n	0.00	0	107.0	0	153;61	n	0.00	0	471.0	0	632;310	n	0.01	2	192.5	2	267;118	y	0.00	0	266.0	0	363;169	n	0.00	1	201.5	1	258;145	n	0.00	0	184.5	0	254;115	n	0.00	0	192.5	0	253;132	n	0.00	0	148.5	0	186;111	n	0.00	0	199.5	0	260;139	n	0.00	0	120.0	0	157;83	n	0.00	0	217.0	0	301;133	n	ENSMUSG00000024587.11	Nars	chr18	protein_coding	asparaginyl-tRNA synthetase
known_NIR_9228	chr18	64645120;64647935	64647886;64648397	-	64645120	64648397	cassetteExon	ENSMUST00000237400.2	known	0.01	1.5	240	0;3	240	n	0.00	0.0	153	0;0	153	n	0.00	1.0	632	2;0	632	n	0.00	0.0	267	0;0	267	n	0.01	2.0	363	2;2	363	y	0.00	0.0	258	0;0	258	n	0.00	1.0	254	1;1	254	n	0.00	0.0	253	0;0	253	n	0.00	0.0	186	0;0	186	n	0.01	1.5	260	1;2	260	n	0.00	0.5	157	0;1	157	n	0.00	0.5	301	1;0	301	n	ENSMUSG00000024587.11	Nars	chr18	protein_coding	asparaginyl-tRNA synthetase
known_NIR_9229	chr18	64648476	64649487	-	64648479	64649487	A3SS	ENSMUST00000237400.2	known	0.35	58	108	58	108	y	0.39	39	61	39	61	y	0.37	181	310	181	310	y	0.48	107	118	107	118	y	0.40	111	169	111	169	y	0.35	79	145	79	145	y	0.40	78	115	78	115	y	0.33	64	132	64	132	y	0.28	44	111	44	111	y	0.33	68	139	68	139	y	0.35	44	83	44	83	y	0.38	82	133	82	133	y	ENSMUSG00000024587.11	Nars	chr18	protein_coding	asparaginyl-tRNA synthetase
known_NIR_9230	chr18	64648479	64649558	-	64648479	64649487	A5SS	ENSMUST00000237400.2	known	0.00	0	108	0	108	n	0.00	0	61	0	61	n	0.00	0	310	0	310	n	0.00	0	118	0	118	n	0.00	0	169	0	169	n	0.00	0	145	0	145	n	0.00	0	115	0	115	n	0.00	0	132	0	132	n	0.02	2	111	2	111	y	0.00	0	139	0	139	n	0.00	0	83	0	83	n	0.00	0	133	0	133	n	ENSMUSG00000024587.11	Nars	chr18	protein_coding	asparaginyl-tRNA synthetase
known_NIR_9231	chr18	6489330	6490463	-	6462991	6490463	A3SS	ENSMUST00000028100.13	known	0.25	3	9	3	9	y	0.50	8	8	8	8	y	0.21	4	15	4	15	y	0.31	4	9	4	9	y	0.15	3	17	3	17	y	0.33	5	10	5	10	y	0.24	4	13	4	13	y	0.15	3	17	3	17	y	0.64	9	5	9	5	y	0.50	11	11	11	11	y	0.50	12	12	12	12	y	0.38	6	10	6	10	y	ENSMUSG00000024240.14	Epc1	chr18	protein_coding	enhancer of polycomb homolog 1
known_NIR_9232	chr18	65130492	65207795	+	65157060	65207795	5pMXE	ENSMUST00000080418.7	known	0.04	1	27	1	27	n	0.03	1	32	1	32	n	0.08	5	56	5	56	y	0.15	5	29	5	29	y	0.02	1	42	1	42	n	0.00	0	19	0	19	n	0.00	0	33	0	33	n	0.06	2	29	2	29	y	0.11	2	16	2	16	y	0.17	5	24	5	24	y	0.19	4	17	4	17	y	0.09	3	30	3	30	y	ENSMUSG00000024589.19	Nedd4l	chr18	protein_coding	neural precursor cell expressed, developmentally down-regulated gene 4-like
known_NIR_9233	chr18	65159155	65207795	+	65130492	65207795	A5SS	ENSMUST00000235343.2	known	0.83	5	1	5	1	n	0.80	4	1	4	1	n	0.74	14	5	14	5	y	0.67	10	5	10	5	y	0.89	8	1	8	1	n	1.00	5	0	5	0	n	1.00	10	0	10	0	n	0.75	6	2	6	2	n	0.75	6	2	6	2	n	0.77	17	5	17	5	y	0.56	5	4	5	4	n	0.73	8	3	8	3	y	ENSMUSG00000024589.19	Nedd4l	chr18	protein_coding	neural precursor cell expressed, developmentally down-regulated gene 4-like
known_NIR_9234	chr18	65159155	65207795	+	65157060	65207795	A5SS	ENSMUST00000080418.7	known	0.16	5	27	5	27	y	0.11	4	32	4	32	y	0.20	14	56	14	56	y	0.26	10	29	10	29	y	0.16	8	42	8	42	y	0.21	5	19	5	19	y	0.23	10	33	10	33	y	0.17	6	29	6	29	y	0.27	6	16	6	16	y	0.41	17	24	17	24	y	0.23	5	17	5	17	y	0.21	8	30	8	30	y	ENSMUSG00000024589.19	Nedd4l	chr18	protein_coding	neural precursor cell expressed, developmentally down-regulated gene 4-like
known_NIR_9235	chr18	65184243	65207795	+	65130492	65207795	A5SS	ENSMUST00000235343.2	known	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.50	5	5	5	5	y	0.00	0	1	0	1	n	1.00	3	0	3	0	n	1.00	2	0	2	0	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.29	2	5	2	5	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	ENSMUSG00000024589.19	Nedd4l	chr18	protein_coding	neural precursor cell expressed, developmentally down-regulated gene 4-like
known_NIR_9236	chr18	65184243	65207795	+	65157060	65207795	A5SS	ENSMUST00000080418.7	known	0.00	0	27	0	27	n	0.00	0	32	0	32	n	0.00	0	56	0	56	n	0.15	5	29	5	29	y	0.00	0	42	0	42	n	0.14	3	19	3	19	y	0.06	2	33	2	33	y	0.00	0	29	0	29	n	0.00	0	16	0	16	n	0.08	2	24	2	24	y	0.00	0	17	0	17	n	0.00	0	30	0	30	n	ENSMUSG00000024589.19	Nedd4l	chr18	protein_coding	neural precursor cell expressed, developmentally down-regulated gene 4-like
known_NIR_9237	chr18	65184243	65207795	+	65159155	65207795	A5SS	ENSMUST00000226058.2	known	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.33	5	10	5	10	y	0.00	0	8	0	8	n	0.38	3	5	3	5	n	0.17	2	10	2	10	y	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.11	2	17	2	17	y	0.00	0	5	0	5	n	0.00	0	8	0	8	n	ENSMUSG00000024589.19	Nedd4l	chr18	protein_coding	neural precursor cell expressed, developmentally down-regulated gene 4-like
known_NIR_9238	chr18	65213142	65239510	+	65213142	65276867	A3SS	ENSMUST00000235343.2	known	0.19	3	13	3	13	y	0.00	0	17	0	17	n	0.02	1	60	1	60	n	0.00	0	37	0	37	n	0.03	2	62	2	62	y	0.04	1	23	1	23	n	0.00	0	43	0	43	n	0.00	0	23	0	23	n	0.11	3	24	3	24	y	0.00	0	41	0	41	n	0.00	0	21	0	21	n	0.00	0	60	0	60	n	ENSMUSG00000024589.19	Nedd4l	chr18	protein_coding	neural precursor cell expressed, developmentally down-regulated gene 4-like
known_NIR_9239	chr18	65276917	65288331	+	65276917	65288327	A3SS	ENSMUST00000235343.2	known	0.00	0	22	0	22	n	0.05	1	19	1	19	n	0.00	0	64	0	64	n	0.00	0	43	0	43	n	0.00	0	61	0	61	n	0.00	0	35	0	35	n	0.06	3	46	3	46	y	0.00	0	25	0	25	n	0.00	0	28	0	28	n	0.00	0	45	0	45	n	0.00	0	16	0	16	n	0.00	0	51	0	51	n	ENSMUSG00000024589.19	Nedd4l	chr18	protein_coding	neural precursor cell expressed, developmentally down-regulated gene 4-like
known_NIR_9240	chr18	65298717	65305346	+	65298717;65300644	65300585;65305346	ES	ENSMUST00000235343.2	known	0.00	0	19.0	0	15;23	n	0.06	1	17.0	1	16;18	n	0.01	1	71.0	1	69;73	n	0.02	1	44.0	1	51;37	n	0.00	0	44.5	0	48;41	n	0.00	0	36.0	0	32;40	n	0.11	5	42.5	5	48;37	y	0.00	0	30.5	0	32;29	n	0.05	2	36.0	2	37;35	y	0.03	1	34.5	1	27;42	n	0.03	1	29.5	1	25;34	n	0.00	0	33.0	0	33;33	n	ENSMUSG00000024589.19	Nedd4l	chr18	protein_coding	neural precursor cell expressed, developmentally down-regulated gene 4-like
known_NIR_9241	chr18	65314453;65314607	65314554;65319397	+	65314453	65319397	cassetteExon	ENSMUST00000235343.2	known	0.00	0.0	32	0;0	32	n	0.00	0.0	47	0;0	47	n	0.00	0.5	124	1;0	124	n	0.01	0.5	56	1;0	56	n	0.00	0.0	49	0;0	49	n	0.00	0.0	37	0;0	37	n	0.04	3.0	65	3;3	65	y	0.01	0.5	48	0;1	48	n	0.00	0.0	35	0;0	35	n	0.03	2.0	61	1;3	61	n	0.00	0.0	60	0;0	60	n	0.00	0.0	57	0;0	57	n	ENSMUSG00000024589.19	Nedd4l	chr18	protein_coding	neural precursor cell expressed, developmentally down-regulated gene 4-like
known_NIR_9242	chr18	65582089	65584618	+	65582089;65582678	65582646;65584618	ES	ENSMUST00000224056.3	known	1.00	2	0.0	2	0;0	n	0.67	1	0.5	1	0;1	n	0.73	4	1.5	4	1;2	n	1.00	2	0.0	2	0;0	n	0.67	6	3.0	6	2;4	y	0.29	1	2.5	1	3;2	n	0.89	4	0.5	4	1;0	n	0.91	5	0.5	5	0;1	n	0.57	2	1.5	2	2;1	n	0.93	7	0.5	7	0;1	n	1.00	1	0.0	1	0;0	n	1.00	4	0.0	4	0;0	n	ENSMUSG00000032688.10	Malt1	chr18	protein_coding	MALT1 paracaspase
known_NIR_9243	chr18	65933782	65942516	+	65934563	65942516	5pMXE	ENSMUST00000155668.9	known	1.00	127	0	127	0	n	1.00	166	0	166	0	n	0.99	290	4	290	4	y	0.98	119	2	119	2	y	1.00	291	0	291	0	n	1.00	220	0	220	0	n	1.00	231	1	231	1	n	1.00	195	0	195	0	n	0.99	152	1	152	1	n	0.99	199	2	199	2	y	1.00	193	0	193	0	n	1.00	173	0	173	0	n	ENSMUSG00000024516.14	Sec11c	chr18	protein_coding	SEC11 homolog C, signal peptidase complex subunit
known_NIR_9244	chr18	65942625	65947909	+	65942625	65945736	A3SS	ENSMUST00000139538.9	known	0.00	0	159	0	159	n	0.00	0	191	0	191	n	0.01	3	375	3	375	y	0.00	0	178	0	178	n	0.00	0	323	0	323	n	0.00	0	287	0	287	n	0.00	0	296	0	296	n	0.00	0	224	0	224	n	0.00	0	186	0	186	n	0.00	0	234	0	234	n	0.00	0	218	0	218	n	0.00	0	208	0	208	n	ENSMUSG00000024516.14	Sec11c	chr18	protein_coding	SEC11 homolog C, signal peptidase complex subunit
known_NIR_9245	chr18	65942625	65947909	+	65942625;65945812	65945736;65947909	ES	ENSMUST00000126432.9	known	0.00	0	81.0	0	159;3	n	0.00	0	98.5	0	191;6	n	0.01	3	197.5	3	375;20	y	0.00	0	92.0	0	178;6	n	0.00	0	165.5	0	323;8	n	0.00	0	146.0	0	287;5	n	0.00	0	153.0	0	296;10	n	0.00	0	117.5	0	224;11	n	0.00	0	94.5	0	186;3	n	0.00	0	121.0	0	234;8	n	0.00	0	110.0	0	218;2	n	0.00	0	106.5	0	208;5	n	ENSMUSG00000024516.14	Sec11c	chr18	protein_coding	SEC11 homolog C, signal peptidase complex subunit
known_NIR_9246	chr18	65942625	65947909	+	65942625;65945885	65945736;65947909	ES	ENSMUST00000025394.14	known	0.00	0	168.0	0	159;177	n	0.00	0	199.0	0	191;207	n	0.01	3	377.0	3	375;379	y	0.00	0	183.5	0	178;189	n	0.00	0	340.0	0	323;357	n	0.00	0	280.0	0	287;273	n	0.00	0	305.0	0	296;314	n	0.00	0	230.5	0	224;237	n	0.00	0	206.5	0	186;227	n	0.00	0	258.5	0	234;283	n	0.00	0	240.0	0	218;262	n	0.00	0	221.5	0	208;235	n	ENSMUSG00000024516.14	Sec11c	chr18	protein_coding	SEC11 homolog C, signal peptidase complex subunit
known_NIR_9247	chr18	65945812	65947909	+	65945885	65947909	A5SS	ENSMUST00000025394.14	known	0.02	3	177	3	177	y	0.03	6	207	6	207	y	0.05	20	379	20	379	y	0.03	6	189	6	189	y	0.02	8	357	8	357	y	0.02	5	273	5	273	y	0.03	10	314	10	314	y	0.04	11	237	11	237	y	0.01	3	227	3	227	y	0.03	8	283	8	283	y	0.01	2	262	2	262	y	0.02	5	235	5	235	y	ENSMUSG00000024516.14	Sec11c	chr18	protein_coding	SEC11 homolog C, signal peptidase complex subunit
known_NIR_9248	chr18	66115781	66116892	-	66115781	66116896	A5SS	ENSMUST00000048260.15	known	0.02	4	167	4	167	y	0.01	1	120	1	120	n	0.01	2	251	2	251	y	0.00	1	213	1	213	n	0.01	3	359	3	359	y	0.00	0	171	0	171	n	0.00	0	224	0	224	n	0.01	2	198	2	198	y	0.01	2	163	2	163	y	0.01	2	250	2	250	y	0.02	3	146	3	146	y	0.00	0	236	0	236	n	ENSMUSG00000041891.17	Lman1	chr18	protein_coding	lectin, mannose-binding, 1
known_NIR_9249	chr18	67360995	67361084	-	67360949	67361084	A3SS	ENSMUST00000073054.5	known	0.00	0	17	0	17	n	0.10	1	9	1	9	n	0.20	1	4	1	4	n	0.10	1	9	1	9	n	0.00	0	13	0	13	n	0.15	2	11	2	11	y	0.00	0	17	0	17	n	0.18	2	9	2	9	y	0.20	2	8	2	8	y	0.14	2	12	2	12	y	0.22	2	7	2	7	n	0.20	2	8	2	8	y	ENSMUSG00000062526.5	Mppe1	chr18	protein_coding	metallophosphoesterase 1
known_NIR_9250	chr18	67377118	67378177	-	67377118	67378453	A5SS	ENSMUST00000073054.5	known	0.20	4	16	4	16	y	0.14	2	12	2	12	y	0.06	1	16	1	16	n	0.00	0	20	0	20	n	0.05	1	21	1	21	n	0.00	0	10	0	10	n	0.05	1	19	1	19	n	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.13	2	13	2	13	y	0.15	2	11	2	11	y	ENSMUSG00000062526.5	Mppe1	chr18	protein_coding	metallophosphoesterase 1
known_NIR_9251	chr18	6770109	6778477	+	6770109	6778495	A3SS	ENSMUST00000234356.2	known	0.01	2	279	2	279	y	0.00	0	245	0	245	n	0.00	0	518	0	518	n	0.00	1	365	1	365	n	0.00	0	433	0	433	n	0.00	0	262	0	262	n	0.00	0	339	0	339	n	0.00	0	258	0	258	n	0.00	0	228	0	228	n	0.00	0	402	0	402	n	0.00	0	270	0	270	n	0.00	0	385	0	385	n	ENSMUSG00000073639.7	Rab18	chr18	protein_coding	RAB18, member RAS oncogene family
known_NIR_9252	chr18	67775048	67777379	+	67774805	67777379	A5SS	ENSMUST00000025418.4	known	0.05	2	39	2	39	y	0.02	1	51	1	51	n	0.05	3	61	3	61	y	0.00	0	40	0	40	n	0.07	3	43	3	43	y	0.08	2	24	2	24	y	0.00	0	49	0	49	n	0.00	0	30	0	30	n	0.00	0	23	0	23	n	0.02	1	50	1	50	n	0.09	4	40	4	40	y	0.00	0	61	0	61	n	ENSMUSG00000024537.6	Psmg2	chr18	protein_coding	proteasome (prosome, macropain) assembly chaperone 2
known_NIR_9253	chr18	67808956	67810780	-	67808899	67810780	A3SS	ENSMUST00000120934.8	known	0.95	55	3	55	3	y	0.94	63	4	63	4	y	0.93	148	12	148	12	y	1.00	54	0	54	0	n	0.96	82	3	82	3	y	1.00	59	0	59	0	n	1.00	85	0	85	0	n	0.96	49	2	49	2	y	1.00	34	0	34	0	n	1.00	51	0	51	0	n	1.00	49	0	49	0	n	1.00	51	0	51	0	n	ENSMUSG00000024539.18	Ptpn2	chr18	protein_coding	protein tyrosine phosphatase, non-receptor type 2
known_NIR_9254	chr18	68409345;68412499	68412338;68433145	-	68409345	68433145	cassetteExon	ENSMUST00000042852.7	known	0.07	3.0	39	2;4	39	y	0.07	3.0	37	3;3	37	y	0.02	1.0	61	1;1	61	n	0.05	4.5	87	3;6	87	y	0.06	4.0	68	4;4	68	y	0.04	1.5	40	2;1	40	n	0.04	2.5	57	2;3	57	y	0.09	5.0	51	3;7	51	y	0.13	6.5	43	8;5	43	y	0.09	7.5	72	11;4	72	y	0.06	4.0	58	6;2	58	y	0.02	1.5	64	3;0	64	n	ENSMUSG00000038121.7	Fam210a	chr18	protein_coding	family with sequence similarity 210, member A
known_NIR_9255	chr18	68433496;68436566	68436503;68438851	+	68433496	68438851	cassetteExon	ENSMUST00000009679.11	known	0.12	1.0	7	2;0	7	n	0.20	0.5	2	0;1	2	n	0.00	0.0	10	0;0	10	n	0.00	0.0	6	0;0	6	n	0.16	1.5	8	1;2	8	n	0.00	0.0	7	0;0	7	n	0.08	0.5	6	0;1	6	n	0.33	1.0	2	0;2	2	n	0.00	0.0	10	0;0	10	n	0.10	1.5	13	0;3	13	n	0.00	0.0	8	0;0	8	n	0.41	7.0	10	4;10	10	y	ENSMUSG00000009535.14	Rnmt	chr18	protein_coding	RNA (guanine-7-) methyltransferase
known_NIR_9256	chr18	68438189	68438851	+	68433496	68438851	A5SS	ENSMUST00000009679.11	known	0.00	0	7	0	7	n	0.50	2	2	2	2	n	0.23	3	10	3	10	y	0.00	0	6	0	6	n	0.20	2	8	2	8	y	0.12	1	7	1	7	n	0.14	1	6	1	6	n	0.50	2	2	2	2	n	0.17	2	10	2	10	y	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.17	2	10	2	10	y	ENSMUSG00000009535.14	Rnmt	chr18	protein_coding	RNA (guanine-7-) methyltransferase
known_NIR_9257	chr18	68438189	68438851	+	68436566	68438851	A5SS	ENSMUST00000131075.8	known	-	-	-	-	-	-	0.67	2	1	2	1	n	1.00	3	0	3	0	n	-	-	-	-	-	-	0.50	2	2	2	2	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.50	2	2	2	2	n	1.00	2	0	2	0	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.17	2	10	2	10	y	ENSMUSG00000009535.14	Rnmt	chr18	protein_coding	RNA (guanine-7-) methyltransferase
known_NIR_9258	chr18	69726655	69766648	+	69697755	69766648	A5SS	ENSMUST00000066717.12	known	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.11	1	8	1	8	n	0.44	4	5	4	5	n	0.00	0	2	0	2	n	0.11	1	8	1	8	n	0.20	3	12	3	12	y	0.33	1	2	1	2	n	0.00	0	11	0	11	n	ENSMUSG00000053477.19	Tcf4	chr18	protein_coding	transcription factor 4
known_NIR_9259	chr18	69785543	69788035	+	69785543	69788032	A3SS	ENSMUST00000066717.12	known	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.22	2	7	2	7	n	0.00	0	5	0	5	n	0.10	1	9	1	9	n	0.11	1	8	1	8	n	0.20	2	8	2	8	y	0.09	1	10	1	10	n	0.00	0	10	0	10	n	0.40	2	3	2	3	n	0.00	0	2	0	2	n	0.09	1	10	1	10	n	ENSMUSG00000053477.19	Tcf4	chr18	protein_coding	transcription factor 4
known_NIR_9260	chr18	69811188	69814640	+	69811200	69814640	A5SS	ENSMUST00000066717.12	known	0.43	3	4	3	4	n	0.50	2	2	2	2	n	0.67	10	5	10	5	y	0.00	0	3	0	3	n	0.44	4	5	4	5	n	0.20	2	8	2	8	y	0.50	8	8	8	8	y	0.10	1	9	1	9	n	0.29	2	5	2	5	n	0.14	2	12	2	12	y	0.14	1	6	1	6	n	0.67	6	3	6	3	n	ENSMUSG00000053477.19	Tcf4	chr18	protein_coding	transcription factor 4
known_NIR_9261	chr18	70591519	70597033	-	70586459	70597033	A3SS	ENSMUST00000212683.2	known	1.00	10	0	10	0	n	1.00	11	0	11	0	n	1.00	2	0	2	0	n	1.00	7	0	7	0	n	1.00	5	0	5	0	n	-	-	-	-	-	-	1.00	6	0	6	0	n	-	-	-	-	-	-	1.00	3	0	3	0	n	1.00	3	0	3	0	n	1.00	7	0	7	0	n	0.85	11	2	11	2	y	ENSMUSG00000044906.7	4930503L19Rik	chr18	protein_coding	RIKEN cDNA 4930503L19 gene
known_NIR_9262	chr18	70597135	70600402	-	70597135	70600406	A5SS	ENSMUST00000212683.2	known	0.88	7	1	7	1	n	0.20	1	4	1	4	n	0.70	7	3	7	3	y	1.00	2	0	2	0	n	0.60	3	2	3	2	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.40	2	3	2	3	n	0.00	0	2	0	2	n	1.00	4	0	4	0	n	ENSMUSG00000044906.7	4930503L19Rik	chr18	protein_coding	RIKEN cDNA 4930503L19 gene
known_NIR_9263	chr18	70656470	70657802	-	70656470	70658447	A5SS	ENSMUST00000161542.8	known	0.00	0	2	0	2	n	0.18	2	9	2	9	y	0.27	3	8	3	8	y	0.00	0	5	0	5	n	0.11	2	17	2	17	y	0.00	0	7	0	7	n	0.20	2	8	2	8	y	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.14	1	6	1	6	n	0.07	1	13	1	13	n	ENSMUSG00000038425.19	Poli	chr18	protein_coding	polymerase (DNA directed), iota
known_NIR_9264	chr18	70726411;70727470	70727347;70749636	+	70726411	70749636	cassetteExon	ENSMUST00000074058.11	known	0.01	1.5	167	2;1	167	n	0.01	1.0	161	0;2	161	n	0.00	0.5	293	1;0	293	n	0.01	2.0	177	0;4	177	n	0.01	2.5	222	5;0	222	n	0.00	0.0	138	0;0	138	n	0.02	4.0	236	5;3	236	y	0.02	2.5	146	1;4	146	n	0.02	3.5	140	4;3	140	y	0.01	3.0	244	3;3	244	y	0.00	0.0	203	0;0	203	n	0.01	3.5	250	1;6	250	n	ENSMUSG00000024513.17	Mbd2	chr18	protein_coding	methyl-CpG binding domain protein 2
known_NIR_9265	chr18	73782033	73782797	-	73782124	73782797	A3SS	ENSMUST00000025393.14	known	0.08	3	36	3	36	y	0.00	0	40	0	40	n	0.01	1	68	1	68	n	0.00	0	49	0	49	n	0.00	0	67	0	67	n	0.03	1	30	1	30	n	0.00	0	63	0	63	n	0.00	0	35	0	35	n	0.00	0	47	0	47	n	0.05	4	84	4	84	y	0.00	0	43	0	43	n	0.03	2	62	2	62	y	ENSMUSG00000024515.14	Smad4	chr18	protein_coding	SMAD family member 4
known_NIR_9266	chr18	73795938	73808090	-	73795938	73808232	A5SS	ENSMUST00000025393.14	known	0.08	2	23	2	23	y	0.00	0	18	0	18	n	0.00	0	41	0	41	n	0.00	0	33	0	33	n	0.00	0	52	0	52	n	0.00	0	34	0	34	n	0.00	0	48	0	48	n	0.03	1	29	1	29	n	0.03	1	35	1	35	n	0.00	0	72	0	72	n	0.00	0	25	0	25	n	0.00	0	42	0	42	n	ENSMUSG00000024515.14	Smad4	chr18	protein_coding	SMAD family member 4
known_NIR_9267	chr18	74408488;74409142	74408975;74409478	+	74408488	74409478	cassetteExon	ENSMUST00000239157.2	known	0.65	43.0	23	33;53	23	y	0.48	32.0	34	33;31	34	y	0.52	51.0	48	60;42	48	y	0.59	38.5	27	41;36	27	y	0.45	31.5	39	34;29	39	y	0.59	37.5	26	36;39	26	y	0.64	41.0	23	38;44	23	y	0.56	37.0	29	37;37	29	y	0.64	24.5	14	25;24	14	y	0.53	32.5	29	33;32	29	y	0.48	20.5	22	23;18	22	y	0.69	39.5	18	33;46	18	y	ENSMUSG00000024561.12	Mbd1	chr18	protein_coding	methyl-CpG binding domain protein 1
known_NIR_9268	chr18	74410649	74411750	+	74410649	74414950	A3SS	ENSMUST00000239157.2	known	0.16	17	88	17	88	y	0.16	10	53	10	53	y	0.24	27	85	27	85	y	0.29	20	50	20	50	y	0.24	18	57	18	57	y	0.38	23	38	23	38	y	0.30	26	62	26	62	y	0.30	15	35	15	35	y	0.10	4	35	4	35	y	0.26	28	78	28	78	y	0.14	7	43	7	43	y	0.25	19	56	19	56	y	ENSMUSG00000024561.12	Mbd1	chr18	protein_coding	methyl-CpG binding domain protein 1
known_NIR_9269	chr18	74787141	74790453	+	74787141	74794678	A3SS	ENSMUST00000074157.13	known	0.04	1	22	1	22	n	0.00	0	8	0	8	n	0.19	4	17	4	17	y	0.00	0	20	0	20	n	0.03	1	28	1	28	n	0.07	1	14	1	14	n	0.20	3	12	3	12	y	0.37	7	12	7	12	y	0.10	2	18	2	18	y	0.00	0	24	0	24	n	0.08	1	11	1	11	n	0.33	5	10	5	10	y	ENSMUSG00000025885.19	Myo5b	chr18	protein_coding	myosin VB
known_NIR_9270	chr18	74848045	74849030	+	74848030	74849030	A5SS	ENSMUST00000074157.13	known	0.27	4	11	4	11	y	0.17	4	19	4	19	y	0.09	2	20	2	20	y	0.11	2	17	2	17	y	0.09	3	32	3	32	y	0.33	6	12	6	12	y	0.18	4	18	4	18	y	0.07	1	14	1	14	n	0.43	3	4	3	4	n	0.10	3	28	3	28	y	0.33	6	12	6	12	y	0.11	2	16	2	16	y	ENSMUSG00000025885.19	Myo5b	chr18	protein_coding	myosin VB
known_NIR_9271	chr18	75138971	75141722	+	75139085	75141722	A5SS	ENSMUST00000040284.6	known	0.24	40	127	40	127	y	0.22	34	123	34	123	y	0.28	53	135	53	135	y	0.22	40	146	40	146	y	0.19	49	204	49	204	y	0.25	39	118	39	118	y	0.24	59	190	59	190	y	0.18	27	120	27	120	y	0.20	29	114	29	114	y	0.21	52	196	52	196	y	0.18	31	145	31	145	y	0.21	40	148	40	148	y	ENSMUSG00000036299.6	BC031181	chr18	protein_coding	cDNA sequence BC031181
known_NIR_9272	chr18	75139185	75141722	+	75138971	75141722	A5SS	ENSMUST00000236421.2	known	0.62	64	40	64	40	y	0.60	50	34	50	34	y	0.64	96	53	96	53	y	0.67	83	40	83	40	y	0.67	101	49	101	49	y	0.59	56	39	56	39	y	0.65	110	59	110	59	y	0.70	64	27	64	27	y	0.70	67	29	67	29	y	0.61	80	52	80	52	y	0.71	75	31	75	31	y	0.60	59	40	59	40	y	ENSMUSG00000036299.6	BC031181	chr18	protein_coding	cDNA sequence BC031181
known_NIR_9273	chr18	75139185	75141722	+	75139085	75141722	A5SS	ENSMUST00000040284.6	known	0.34	64	127	64	127	y	0.29	50	123	50	123	y	0.42	96	135	96	135	y	0.36	83	146	83	146	y	0.33	101	204	101	204	y	0.32	56	118	56	118	y	0.37	110	190	110	190	y	0.35	64	120	64	120	y	0.37	67	114	67	114	y	0.29	80	196	80	196	y	0.34	75	145	75	145	y	0.29	59	148	59	148	y	ENSMUSG00000036299.6	BC031181	chr18	protein_coding	cDNA sequence BC031181
known_NIR_9274	chr18	75215578	75247861	+	75215578	75238938	3pMXE	ENSMUST00000236220.2	known	1.00	50	0	50	0	n	0.97	57	2	57	2	y	1.00	59	0	59	0	n	0.93	51	4	51	4	y	1.00	68	0	68	0	n	0.94	31	2	31	2	y	0.98	85	2	85	2	y	1.00	30	0	30	0	n	0.95	37	2	37	2	y	0.98	81	2	81	2	y	1.00	50	0	50	0	n	1.00	68	0	68	0	n	ENSMUSG00000035765.11	Dym	chr18	protein_coding	dymeclin
known_NIR_9275	chr18	75259990	75283752	+	75259990	75332234	A3SS	ENSMUST00000039608.9	known	0.00	0	86	0	86	n	0.00	0	66	0	66	n	0.01	1	80	1	80	n	0.00	0	66	0	66	n	0.00	0	84	0	84	n	0.00	0	28	0	28	n	0.02	2	116	2	116	y	0.00	0	37	0	37	n	0.00	0	63	0	63	n	0.01	1	90	1	90	n	0.00	0	93	0	93	n	0.01	1	72	1	72	n	ENSMUSG00000035765.11	Dym	chr18	protein_coding	dymeclin
known_NIR_9276	chr18	75504019	75526898	+	75504019;75509019	75508945;75526898	ES	ENSMUST00000026999.10	known	0.00	0	6.5	0	9;4	n	0.00	0	11.5	0	11;12	n	0.00	0	22.5	0	23;22	n	0.00	0	12.5	0	13;12	n	0.00	0	11.5	0	10;13	n	0.00	0	8.0	0	9;7	n	0.00	0	11.0	0	12;10	n	0.00	0	9.0	0	9;9	n	0.10	2	18.0	2	18;18	y	0.00	0	36.5	0	34;39	n	0.00	0	20.0	0	16;24	n	0.00	0	16.5	0	10;23	n	ENSMUSG00000025880.12	Smad7	chr18	protein_coding	SMAD family member 7
known_NIR_9277	chr18	76192688	76269898	+	76144761	76269898	A5SS	ENSMUST00000058997.15	known	0.00	0	1	0	1	n	-	-	-	-	-	-	0.42	5	7	5	7	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.67	2	1	2	1	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.75	3	1	3	1	n	ENSMUSG00000044646.16	Zbtb7c	chr18	protein_coding	zinc finger and BTB domain containing 7C
known_NIR_9278	chr18	76375303	76395511	+	76375050	76395511	A5SS	ENSMUST00000168423.9	known	0.00	0	6	0	6	n	0.20	1	4	1	4	n	0.00	0	23	0	23	n	0.00	0	18	0	18	n	0.08	3	33	3	33	y	0.00	0	17	0	17	n	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.00	0	25	0	25	n	0.11	1	8	1	8	n	0.00	0	16	0	16	n	ENSMUSG00000024563.17	Smad2	chr18	protein_coding	SMAD family member 2
known_NIR_9279	chr18	76395798	76420999	+	76395798;76420020	76419931;76420999	ES	ENSMUST00000168423.9	known	0.12	3	23.0	3	34;12	y	0.00	0	13.5	0	17;10	n	0.05	2	36.0	2	43;29	y	0.00	0	24.0	0	29;19	n	0.00	0	42.5	0	52;33	n	0.00	0	21.0	0	30;12	n	0.11	4	33.0	4	45;21	y	0.00	0	25.5	0	32;19	n	0.06	1	16.0	1	14;18	n	0.00	0	38.5	0	40;37	n	0.00	0	16.5	0	18;15	n	0.14	5	29.5	5	39;20	y	ENSMUSG00000024563.17	Smad2	chr18	protein_coding	SMAD family member 2
known_NIR_9280	chr18	77017912;77018455	77018320;77027264	+	77017912	77027264	cassetteExon	ENSMUST00000026487.6	known	0.01	1.5	181	2;1	181	n	0.00	0.5	180	0;1	180	n	0.00	0.5	219	1;0	219	n	0.01	1.5	181	1;2	181	n	0.01	2.5	253	2;3	253	y	0.00	0.5	123	0;1	123	n	0.01	1.0	193	1;1	193	n	0.01	2.0	155	1;3	155	n	0.01	1.0	160	2;0	160	n	0.01	1.5	228	2;1	228	n	0.01	2.5	225	2;3	225	y	0.02	3.0	196	2;4	196	y	ENSMUSG00000090000.3	Ier3ip1	chr18	protein_coding	immediate early response 3 interacting protein 1
known_NIR_9281	chr18	77032223	77038809	+	77031881	77038809	A5SS	ENSMUST00000097522.11	known	0.00	0	24	0	24	n	0.06	1	16	1	16	n	0.00	0	23	0	23	n	0.08	2	23	2	23	y	0.09	4	42	4	42	y	0.06	1	15	1	15	n	0.07	3	38	3	38	y	0.24	4	13	4	13	y	0.11	2	17	2	17	y	0.12	3	21	3	21	y	0.00	0	21	0	21	n	0.00	0	23	0	23	n	ENSMUSG00000025421.16	Hdhd2	chr18	protein_coding	haloacid dehalogenase-like hydrolase domain containing 2
known_NIR_9282	chr18	77032223	77038809	+	77032227	77038809	A5SS	ENSMUST00000150990.9	known	0.00	0	10	0	10	n	0.11	1	8	1	8	n	0.00	0	8	0	8	n	0.40	2	3	2	3	n	0.25	4	12	4	12	y	0.14	1	6	1	6	n	0.10	3	26	3	26	y	0.20	4	16	4	16	y	0.33	2	4	2	4	n	0.25	3	9	3	9	y	0.00	0	12	0	12	n	0.00	0	6	0	6	n	ENSMUSG00000025421.16	Hdhd2	chr18	protein_coding	haloacid dehalogenase-like hydrolase domain containing 2
known_NIR_9283	chr18	77032227	77038809	+	77031881	77038809	A5SS	ENSMUST00000097522.11	known	0.29	10	24	10	24	y	0.33	8	16	8	16	y	0.26	8	23	8	23	y	0.12	3	23	3	23	y	0.22	12	42	12	42	y	0.29	6	15	6	15	y	0.41	26	38	26	38	y	0.55	16	13	16	13	y	0.19	4	17	4	17	y	0.30	9	21	9	21	y	0.36	12	21	12	21	y	0.21	6	23	6	23	y	ENSMUSG00000025421.16	Hdhd2	chr18	protein_coding	haloacid dehalogenase-like hydrolase domain containing 2
known_NIR_9284	chr18	77153603	77184945	+	77153115	77184945	A5SS	ENSMUST00000114777.10	known	0.16	4	21	4	21	y	0.00	0	14	0	14	n	0.12	7	51	7	51	y	0.14	6	36	6	36	y	0.09	4	39	4	39	y	0.14	5	32	5	32	y	0.24	8	26	8	26	y	0.25	6	18	6	18	y	0.00	0	13	0	13	n	0.12	6	42	6	42	y	0.14	4	24	4	24	y	0.23	10	33	10	33	y	ENSMUSG00000025423.17	Pias2	chr18	protein_coding	protein inhibitor of activated STAT 2
known_NIR_9285	chr18	77232838	77234399	+	77232838	77237757	A3SS	ENSMUST00000114777.10	known	0.16	10	52	10	52	y	0.22	19	66	19	66	y	0.30	28	66	28	66	y	0.12	9	68	9	68	y	0.16	15	76	15	76	y	0.27	12	33	12	33	y	0.29	25	61	25	61	y	0.33	17	34	17	34	y	0.19	12	52	12	52	y	0.15	17	96	17	96	y	0.13	10	69	10	69	y	0.14	17	103	17	103	y	ENSMUSG00000025423.17	Pias2	chr18	protein_coding	protein inhibitor of activated STAT 2
known_NIR_9286	chr18	77854738	77855420	-	77854738	77856044	A5SS	ENSMUST00000236234.2	known	0.60	6	4	6	4	y	0.68	13	6	13	6	y	0.60	6	4	6	4	y	0.54	7	6	7	6	y	0.47	7	8	7	8	y	1.00	1	0	1	0	n	0.75	15	5	15	5	y	0.00	0	2	0	2	n	0.69	11	5	11	5	y	0.50	9	9	9	9	y	0.50	6	6	6	6	y	0.62	15	9	15	9	y	ENSMUSG00000041840.9	Haus1	chr18	protein_coding	HAUS augmin-like complex, subunit 1
known_NIR_9287	chr18	77862243	77863477	+	77861810	77863477	A5SS	ENSMUST00000026495.15	known	0.00	1	1047	1	1047	n	0.00	2	749	2	749	y	0.00	5	1167	5	1167	y	0.00	2	1452	2	1452	y	0.00	3	1480	3	1480	y	0.01	4	676	4	676	y	0.00	4	1483	4	1483	y	0.00	3	729	3	729	y	0.00	3	1042	3	1042	y	0.00	4	1735	4	1735	y	0.00	5	1263	5	1263	y	0.00	4	1715	4	1715	y	ENSMUSG00000025428.16	Atp5a1	chr18	protein_coding	ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1
known_NIR_9288	chr18	78005753	78008165	+	78005753	78008116	A3SS	ENSMUST00000044622.7	known	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.21	3	11	3	11	y	0.00	0	5	0	5	n	0.11	1	8	1	8	n	0.00	0	7	0	7	n	0.14	1	6	1	6	n	0.00	0	12	0	12	n	0.17	1	5	1	5	n	0.00	0	6	0	6	n	ENSMUSG00000039840.9	Epg5	chr18	protein_coding	ectopic P-granules autophagy protein 5 homolog (C. elegans)
known_NIR_9289	chr18	7869577	7869991	+	7869091	7869991	A5SS	ENSMUST00000171042.8	known	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.40	2	3	2	3	n	0.38	3	5	3	5	n	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.17	2	10	2	10	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.10	1	9	1	9	n	ENSMUSG00000024283.16	Wac	chr18	protein_coding	WW domain containing adaptor with coiled-coil
known_NIR_9290	chr18	7869577	7869991	+	7869615	7869991	A5SS	ENSMUST00000167020.8	known	0.00	0	34	0	34	n	0.00	0	14	0	14	n	0.05	2	39	2	39	y	0.11	3	25	3	25	y	0.00	0	26	0	26	n	0.05	1	19	1	19	n	0.06	2	33	2	33	y	0.00	0	27	0	27	n	0.00	0	25	0	25	n	0.00	0	36	0	36	n	0.00	0	24	0	24	n	0.04	1	25	1	25	n	ENSMUSG00000024283.16	Wac	chr18	protein_coding	WW domain containing adaptor with coiled-coil
known_NIR_9291	chr18	7869615	7869991	+	7869091	7869991	A5SS	ENSMUST00000171042.8	known	0.89	34	4	34	4	y	0.88	14	2	14	2	y	0.93	39	3	39	3	y	0.83	25	5	25	5	y	0.84	26	5	26	5	y	0.86	19	3	19	3	y	0.77	33	10	33	10	y	0.96	27	1	27	1	n	0.93	25	2	25	2	y	0.88	36	5	36	5	y	0.86	24	4	24	4	y	0.74	25	9	25	9	y	ENSMUSG00000024283.16	Wac	chr18	protein_coding	WW domain containing adaptor with coiled-coil
known_NIR_9292	chr18	7869889	7869991	+	7869615	7869991	A5SS	ENSMUST00000167020.8	known	0.03	1	34	1	34	n	0.07	1	14	1	14	n	0.05	2	39	2	39	y	0.04	1	25	1	25	n	0.00	0	26	0	26	n	0.00	0	19	0	19	n	0.00	0	33	0	33	n	0.04	1	27	1	27	n	0.00	0	25	0	25	n	0.10	4	36	4	36	y	0.08	2	24	2	24	y	0.04	1	25	1	25	n	ENSMUSG00000024283.16	Wac	chr18	protein_coding	WW domain containing adaptor with coiled-coil
known_NIR_9293	chr18	7870027	7871531	+	7870027	7871549	A3SS	ENSMUST00000171042.8	known	0.09	4	41	4	41	y	0.04	1	25	1	25	n	0.09	5	52	5	52	y	0.00	0	34	0	34	n	0.08	3	35	3	35	y	0.13	4	26	4	26	y	0.09	4	43	4	43	y	0.07	3	39	3	39	y	0.03	1	34	1	34	n	0.00	0	54	0	54	n	0.07	2	27	2	27	y	0.04	2	47	2	47	y	ENSMUSG00000024283.16	Wac	chr18	protein_coding	WW domain containing adaptor with coiled-coil
known_NIR_9294	chr18	7906044	7916052	+	7906044	7910516	A3SS&ES	ENSMUST00000165854.8	known	0.09	6	58	6	58	y	0.12	5	35	5	35	y	0.07	7	88	7	88	y	0.07	6	80	6	80	y	0.08	9	102	9	102	y	0.02	1	48	1	48	n	0.09	7	71	7	71	y	0.03	2	64	2	64	y	0.00	0	55	0	55	n	0.03	2	61	2	61	y	0.11	6	48	6	48	y	0.11	8	68	8	68	y	ENSMUSG00000024283.16	Wac	chr18	protein_coding	WW domain containing adaptor with coiled-coil
known_NIR_9295	chr18	7906044	7916052	+	7910824	7916052	5pMXE	ENSMUST00000167057.2	known	0.08	6	70	6	70	y	0.08	5	58	5	58	y	0.07	7	90	7	90	y	0.06	6	99	6	99	y	0.07	9	119	9	119	y	0.02	1	48	1	48	n	0.06	7	112	7	112	y	0.03	2	67	2	67	y	0.00	0	78	0	78	n	0.02	2	116	2	116	y	0.07	6	77	6	77	y	0.07	8	113	8	113	y	ENSMUSG00000024283.16	Wac	chr18	protein_coding	WW domain containing adaptor with coiled-coil
known_NIR_9296	chr18	7906044;7910824	7910516;7916052	+	7906044	7916052	cassetteExon	ENSMUST00000171042.8	known	0.91	64.0	6	58;70	6	y	0.90	46.5	5	35;58	5	y	0.93	89.0	7	88;90	7	y	0.94	89.5	6	80;99	6	y	0.92	110.5	9	102;119	9	y	0.98	48.0	1	48;48	1	n	0.93	91.5	7	71;112	7	y	0.97	65.5	2	64;67	2	y	1.00	66.5	0	55;78	0	n	0.98	88.5	2	61;116	2	y	0.91	62.5	6	48;77	6	y	0.92	90.5	8	68;113	8	y	ENSMUSG00000024283.16	Wac	chr18	protein_coding	WW domain containing adaptor with coiled-coil
known_NIR_9297	chr18	7910824	7916031	+	7910824	7916052	A3SS	ENSMUST00000074919.11	known	0.00	0	70	0	70	n	0.00	0	58	0	58	n	0.00	0	90	0	90	n	0.00	0	99	0	99	n	0.00	0	119	0	119	n	0.00	0	48	0	48	n	0.00	0	112	0	112	n	0.00	0	67	0	67	n	0.00	0	78	0	78	n	0.00	0	116	0	116	n	0.00	0	77	0	77	n	0.03	3	113	3	113	y	ENSMUSG00000024283.16	Wac	chr18	protein_coding	WW domain containing adaptor with coiled-coil
known_NIR_9298	chr18	7916297	7917562	+	7916297	7917553	A3SS	ENSMUST00000074919.11	known	0.00	0	61	0	61	n	0.02	1	44	1	44	n	0.01	1	88	1	88	n	0.13	12	82	12	82	y	0.08	9	110	9	110	y	0.17	8	39	8	39	y	0.08	8	87	8	87	y	0.00	0	49	0	49	n	0.03	2	70	2	70	y	0.06	6	96	6	96	y	0.09	7	72	7	72	y	0.05	6	113	6	113	y	ENSMUSG00000024283.16	Wac	chr18	protein_coding	WW domain containing adaptor with coiled-coil
known_NIR_9299	chr18	7920250	7921425	+	7920250	7921422	A3SS	ENSMUST00000171042.8	known	0.02	2	83	2	83	y	0.04	3	79	3	79	y	0.04	6	130	6	130	y	0.02	2	88	2	88	y	0.05	7	129	7	129	y	0.07	4	52	4	52	y	0.07	8	111	8	111	y	0.00	0	70	0	70	n	0.05	3	58	3	58	y	0.06	8	122	8	122	y	0.11	10	82	10	82	y	0.07	10	133	10	133	y	ENSMUSG00000024283.16	Wac	chr18	protein_coding	WW domain containing adaptor with coiled-coil
known_NIR_9300	chr18	80250161	80250369	+	80250116	80250369	A5SS	ENSMUST00000125127.8	known	0.09	11	112	11	112	y	0.08	8	92	8	92	y	0.06	9	133	9	133	y	0.07	10	126	10	126	y	0.07	12	168	12	168	y	0.04	5	116	5	116	y	0.06	10	153	10	153	y	0.11	12	93	12	93	y	0.08	9	97	9	97	y	0.09	18	179	18	179	y	0.08	10	108	10	108	y	0.05	8	146	8	146	y	ENSMUSG00000024571.16	Gm16286	chr18	protein_coding	predicted gene 16286
known_NIR_9301	chr18	80250276	80250369	+	80250116	80250369	A5SS	ENSMUST00000125127.8	known	0.09	11	112	11	112	y	0.10	10	92	10	92	y	0.06	9	133	9	133	y	0.09	13	126	13	126	y	0.03	6	168	6	168	y	0.03	4	116	4	116	y	0.03	5	153	5	153	y	0.07	7	93	7	93	y	0.07	7	97	7	97	y	0.07	13	179	13	179	y	0.06	7	108	7	108	y	0.06	10	146	10	146	y	ENSMUSG00000024571.16	Gm16286	chr18	protein_coding	predicted gene 16286
known_NIR_9302	chr18	80250276	80250369	+	80250161	80250369	A5SS	ENSMUST00000025463.14	known	0.50	11	11	11	11	y	0.56	10	8	10	8	y	0.50	9	9	9	9	y	0.57	13	10	13	10	y	0.33	6	12	6	12	y	0.44	4	5	4	5	n	0.33	5	10	5	10	y	0.37	7	12	7	12	y	0.44	7	9	7	9	y	0.42	13	18	13	18	y	0.41	7	10	7	10	y	0.56	10	8	10	8	y	ENSMUSG00000024571.16	Gm16286	chr18	protein_coding	predicted gene 16286
known_NIR_9303	chr18	80250558	80251325	+	80250558	80261919	A3SS	ENSMUST00000145963.9	known	0.00	0	67	0	67	n	0.07	6	75	6	75	y	0.06	6	93	6	93	y	0.03	3	94	3	94	y	0.10	9	79	9	79	y	0.13	6	41	6	41	y	0.08	7	86	7	86	y	0.05	2	42	2	42	y	0.04	3	66	3	66	y	0.04	3	68	3	68	y	0.02	2	88	2	88	y	0.02	1	65	1	65	n	ENSMUSG00000057130.13	Txnl4a	chr18	protein_coding	thioredoxin-like 4A
known_NIR_9304	chr18	80250558	80261919	+	80250558	80253277	3pMXE	ENSMUST00000145116.8	known	0.36	67	121	67	121	y	0.44	75	95	75	95	y	0.37	93	157	93	157	y	0.42	94	129	94	129	y	0.33	79	164	79	164	y	0.34	41	80	41	80	y	0.31	86	189	86	189	y	0.37	42	73	42	73	y	0.39	66	102	66	102	y	0.30	68	155	68	155	y	0.37	88	153	88	153	y	0.35	65	123	65	123	y	ENSMUSG00000024571.16	Gm16286	chr18	protein_coding	predicted gene 16286
known_NIR_9305	chr18	80250558;80251444	80251325;80253277	+	80250558	80253277	cassetteExon	ENSMUST00000156400.9	known	0.01	1.5	121	0;3	121	n	0.04	4.0	95	6;2	95	y	0.03	5.0	157	6;4	157	y	0.04	5.5	129	3;8	129	y	0.03	5.0	164	9;1	164	n	0.07	6.0	80	6;6	80	y	0.04	8.5	189	7;10	189	y	0.05	4.0	73	2;6	73	y	0.02	2.5	102	3;2	102	y	0.04	6.5	155	3;10	155	y	0.02	2.5	153	2;3	153	y	0.03	4.0	123	1;7	123	n	ENSMUSG00000024571.16	Gm16286	chr18	protein_coding	predicted gene 16286
known_NIR_9306	chr18	80258791	80261919	+	80250558	80261919	A5SS	ENSMUST00000145963.9	known	0.04	3	67	3	67	y	0.05	4	75	4	75	y	0.00	0	93	0	93	n	0.09	9	94	9	94	y	0.05	4	79	4	79	y	0.00	0	41	0	41	n	0.04	4	86	4	86	y	0.00	0	42	0	42	n	0.08	6	66	6	66	y	0.11	8	68	8	68	y	0.09	9	88	9	88	y	0.06	4	65	4	65	y	ENSMUSG00000057130.13	Txnl4a	chr18	protein_coding	thioredoxin-like 4A
known_NIR_9307	chr18	80296608	80298587	+	80296608;80297690	80297556;80298587	ES	ENSMUST00000131780.8	known	0.21	2	7.5	2	12;3	y	0.33	9	18.0	9	36;0	n	0.19	2	8.5	2	17;0	n	0.21	3	11.0	3	21;1	n	0.20	9	35.5	9	62;9	y	0.12	2	14.5	2	24;5	y	0.05	1	20.0	1	37;3	n	0.32	5	10.5	5	16;5	y	0.12	2	15.0	2	28;2	y	0.11	2	16.5	2	31;2	y	0.05	1	19.0	1	36;2	n	0.19	2	8.5	2	15;2	y	ENSMUSG00000034006.18	Slc66a2	chr18	protein_coding	solute carrier family 66 member 2
known_NIR_9308	chr18	80299088	80299997	+	80298625	80299997	A5SS	ENSMUST00000131780.8	known	0.00	0	18	0	18	n	0.00	0	26	0	26	n	0.11	2	16	2	16	y	0.00	0	22	0	22	n	0.00	0	39	0	39	n	0.00	0	33	0	33	n	0.00	0	17	0	17	n	0.00	0	35	0	35	n	0.00	0	12	0	12	n	0.00	0	20	0	20	n	0.04	1	26	1	26	n	0.00	0	14	0	14	n	ENSMUSG00000034006.18	Slc66a2	chr18	protein_coding	solute carrier family 66 member 2
known_NIR_9309	chr18	80299533	80299997	+	80298625	80299997	A5SS	ENSMUST00000131780.8	known	0.28	7	18	7	18	y	0.33	13	26	13	26	y	0.58	22	16	22	16	y	0.37	13	22	13	22	y	0.37	23	39	23	39	y	0.11	4	33	4	33	y	0.45	14	17	14	17	y	0.24	11	35	11	35	y	0.45	10	12	10	12	y	0.51	21	20	21	20	y	0.26	9	26	9	26	y	0.53	16	14	16	14	y	ENSMUSG00000034006.18	Slc66a2	chr18	protein_coding	solute carrier family 66 member 2
known_NIR_9310	chr18	80299533	80299997	+	80299088	80299997	A5SS	ENSMUST00000144468.8	known	1.00	7	0	7	0	n	1.00	13	0	13	0	n	0.92	22	2	22	2	y	1.00	13	0	13	0	n	1.00	23	0	23	0	n	1.00	4	0	4	0	n	1.00	14	0	14	0	n	1.00	11	0	11	0	n	1.00	10	0	10	0	n	1.00	21	0	21	0	n	0.90	9	1	9	1	n	1.00	16	0	16	0	n	ENSMUSG00000034006.18	Slc66a2	chr18	protein_coding	solute carrier family 66 member 2
known_NIR_9311	chr18	80299618	80299997	+	80298625	80299997	A5SS	ENSMUST00000131780.8	known	0.74	51	18	51	18	y	0.69	58	26	58	26	y	0.62	26	16	26	16	y	0.74	62	22	62	22	y	0.70	90	39	90	39	y	0.27	12	33	12	33	y	0.78	61	17	61	17	y	0.51	37	35	37	35	y	0.84	64	12	64	12	y	0.83	100	20	100	20	y	0.76	84	26	84	26	y	0.88	99	14	99	14	y	ENSMUSG00000034006.18	Slc66a2	chr18	protein_coding	solute carrier family 66 member 2
known_NIR_9312	chr18	80299618	80299997	+	80299088	80299997	A5SS	ENSMUST00000144468.8	known	1.00	51	0	51	0	n	1.00	58	0	58	0	n	0.93	26	2	26	2	y	1.00	62	0	62	0	n	1.00	90	0	90	0	n	1.00	12	0	12	0	n	1.00	61	0	61	0	n	1.00	37	0	37	0	n	1.00	64	0	64	0	n	1.00	100	0	100	0	n	0.99	84	1	84	1	n	1.00	99	0	99	0	n	ENSMUSG00000034006.18	Slc66a2	chr18	protein_coding	solute carrier family 66 member 2
known_NIR_9313	chr18	80299618	80299997	+	80299533	80299997	A5SS	ENSMUST00000129043.8	known	0.88	51	7	51	7	y	0.82	58	13	58	13	y	0.54	26	22	26	22	y	0.83	62	13	62	13	y	0.80	90	23	90	23	y	0.75	12	4	12	4	y	0.81	61	14	61	14	y	0.77	37	11	37	11	y	0.86	64	10	64	10	y	0.83	100	21	100	21	y	0.90	84	9	84	9	y	0.86	99	16	99	16	y	ENSMUSG00000034006.18	Slc66a2	chr18	protein_coding	solute carrier family 66 member 2
known_NIR_9314	chr18	80306768	80326491	+	80306768	80315677	3pMXE	ENSMUST00000151677.9	known	0.82	132	28	132	28	y	0.74	138	49	138	49	y	0.76	77	24	77	24	y	0.84	154	29	154	29	y	0.82	181	41	181	41	y	0.81	43	10	43	10	y	0.82	134	29	134	29	y	0.83	86	18	86	18	y	0.80	131	32	131	32	y	0.74	192	67	192	67	y	0.75	133	44	133	44	y	0.85	167	30	167	30	y	ENSMUSG00000034006.18	Slc66a2	chr18	protein_coding	solute carrier family 66 member 2
known_NIR_9315	chr18	80306768	80326491	+	80306768;80315730	80315677;80326491	ES	ENSMUST00000131780.8	known	0.81	132	30.0	132	28;32	y	0.75	138	46.0	138	49;43	y	0.77	77	22.5	77	24;21	y	0.83	154	32.0	154	29;35	y	0.82	181	40.0	181	41;39	y	0.80	43	11.0	43	10;12	y	0.81	134	31.0	134	29;33	y	0.84	86	16.0	86	18;14	y	0.80	131	32.5	131	32;33	y	0.78	192	54.0	192	67;41	y	0.75	133	45.5	133	44;47	y	0.83	167	34.5	167	30;39	y	ENSMUSG00000034006.18	Slc66a2	chr18	protein_coding	solute carrier family 66 member 2
known_NIR_9316	chr18	80326707	80326963	+	80326707	80334791	A3SS	ENSMUST00000131780.8	known	0.02	3	178	3	178	y	0.00	1	204	1	204	n	0.02	3	126	3	126	y	0.02	3	196	3	196	y	0.01	2	239	2	239	y	0.00	0	83	0	83	n	0.01	2	184	2	184	y	0.04	4	109	4	109	y	0.01	2	185	2	185	y	0.03	7	258	7	258	y	0.02	4	258	4	258	y	0.02	4	211	4	211	y	ENSMUSG00000034006.18	Slc66a2	chr18	protein_coding	solute carrier family 66 member 2
known_NIR_9317	chr18	80651240	80678617	-	80651240	80678906	A5SS	ENSMUST00000236310.2	known	0.20	1	4	1	4	n	0.33	2	4	2	4	n	0.23	3	10	3	10	y	0.36	5	9	5	9	y	0.41	7	10	7	10	y	0.57	4	3	4	3	n	0.50	7	7	7	7	y	0.17	1	5	1	5	n	0.60	6	4	6	4	y	0.33	4	8	4	8	y	0.17	1	5	1	5	n	0.22	2	7	2	7	n	ENSMUSG00000033016.17	Nfatc1	chr18	protein_coding	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1
known_NIR_9318	chr18	80779364	80781868	-	80779364;80780059	80780027;80781868	ES	ENSMUST00000091790.5	known	0.80	53	13.5	53	16;11	y	0.90	64	7.5	64	11;4	y	0.92	51	4.5	51	6;3	y	0.88	49	6.5	49	6;7	y	0.90	59	6.5	59	6;7	y	0.66	19	10.0	19	9;11	y	0.84	82	15.5	82	17;14	y	0.84	34	6.5	34	6;7	y	0.78	38	10.5	38	12;9	y	0.81	54	13.0	54	11;15	y	0.81	52	12.5	52	14;11	y	0.70	53	22.5	53	21;24	y	ENSMUSG00000024566.11	Atp9b	chr18	protein_coding	ATPase, class II, type 9B
known_NIR_9319	chr18	80779364	80781868	-	80780059	80781868	3pMXE	ENSMUST00000225218.2	known	0.83	53	11	53	11	y	0.94	64	4	64	4	y	0.94	51	3	51	3	y	0.88	49	7	49	7	y	0.89	59	7	59	7	y	0.63	19	11	19	11	y	0.85	82	14	82	14	y	0.83	34	7	34	7	y	0.81	38	9	38	9	y	0.78	54	15	54	15	y	0.83	52	11	52	11	y	0.69	53	24	53	24	y	ENSMUSG00000024566.11	Atp9b	chr18	protein_coding	ATPase, class II, type 9B
known_NIR_9320	chr18	80781996	80782962	-	80782071	80782962	A3SS	ENSMUST00000091790.5	known	0.02	1	43	1	43	n	0.04	2	47	2	47	y	0.02	1	48	1	48	n	0.08	3	35	3	35	y	0.05	3	60	3	60	y	0.13	4	27	4	27	y	0.00	0	52	0	52	n	0.02	1	40	1	40	n	0.00	0	32	0	32	n	0.03	2	56	2	56	y	0.04	2	43	2	43	y	0.06	4	64	4	64	y	ENSMUSG00000024566.11	Atp9b	chr18	protein_coding	ATPase, class II, type 9B
known_NIR_9321	chr18	80797617	80799669	-	80797604	80799669	A3SS	ENSMUST00000091790.5	known	0.00	0	37	0	37	n	0.02	1	47	1	47	n	0.00	0	50	0	50	n	0.02	1	48	1	48	n	0.02	1	57	1	57	n	0.00	0	28	0	28	n	0.02	1	48	1	48	n	0.03	1	37	1	37	n	0.02	1	40	1	40	n	0.03	2	73	2	73	y	0.00	0	60	0	60	n	0.00	0	47	0	47	n	ENSMUSG00000024566.11	Atp9b	chr18	protein_coding	ATPase, class II, type 9B
known_NIR_9322	chr18	80838647	80879570	-	80838647;80851987	80851827;80879570	ES	ENSMUST00000091790.5	known	0.00	0	26.5	0	37;16	n	0.00	0	16.0	0	25;7	n	0.02	1	40.0	1	45;35	n	0.00	0	35.0	0	41;29	n	0.03	1	34.5	1	44;25	n	0.12	2	14.5	2	15;14	y	0.00	0	35.5	0	46;25	n	0.00	0	36.5	0	53;20	n	0.00	0	24.0	0	23;25	n	0.00	0	32.5	0	35;30	n	0.00	0	21.5	0	24;19	n	0.00	0	37.0	0	52;22	n	ENSMUSG00000024566.11	Atp9b	chr18	protein_coding	ATPase, class II, type 9B
known_NIR_9323	chr18	80838647	80879570	-	80851987	80879570	3pMXE	ENSMUST00000224709.2	known	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.03	1	35	1	35	n	0.00	0	29	0	29	n	0.04	1	25	1	25	n	0.12	2	14	2	14	y	0.00	0	25	0	25	n	0.00	0	20	0	20	n	0.00	0	25	0	25	n	0.00	0	30	0	30	n	0.00	0	19	0	19	n	0.00	0	22	0	22	n	ENSMUSG00000024566.11	Atp9b	chr18	protein_coding	ATPase, class II, type 9B
known_NIR_9324	chr18	80838647;80879646	80879570;80887742	-	80838647;80851987	80851827;80887742	MXE	ENSMUST00000225235.2	known	0.24	7.5	23.5	0;15	37;10	n	0.36	8.0	14.5	0;16	25;4	n	0.51	26.0	25.0	1;51	45;5	n	0.44	17.0	22.0	0;34	41;3	n	0.34	14.0	27.0	1;27	44;10	n	0.42	6.5	9.0	2;11	15;3	y	0.36	14.5	26.0	0;29	46;6	n	0.32	13.0	28.0	0;26	53;3	n	0.45	11.5	14.0	0;23	23;5	n	0.45	19.0	23.0	0;38	35;11	n	0.48	11.0	12.0	0;22	24;0	n	0.33	14.0	28.5	0;28	52;5	n	ENSMUSG00000024566.11	Atp9b	chr18	protein_coding	ATPase, class II, type 9B
known_NIR_9325	chr18	80851987	80887742	-	80851987;80879646	80879570;80887742	ES	ENSMUST00000091790.5	known	0.39	10	15.5	10	16;15	y	0.26	4	11.5	4	7;16	y	0.10	5	43.0	5	35;51	y	0.09	3	31.5	3	29;34	y	0.28	10	26.0	10	25;27	y	0.19	3	12.5	3	14;11	y	0.18	6	27.0	6	25;29	y	0.12	3	23.0	3	20;26	y	0.17	5	24.0	5	25;23	y	0.24	11	34.0	11	30;38	y	0.00	0	20.5	0	19;22	n	0.17	5	25.0	5	22;28	y	ENSMUSG00000024566.11	Atp9b	chr18	protein_coding	ATPase, class II, type 9B
known_NIR_9326	chr18	80920588	80952807	-	80920588;80935138	80935030;80952807	ES	ENSMUST00000091790.5	known	0.00	0	21.5	0	21;22	n	0.00	0	23.0	0	24;22	n	0.02	1	40.5	1	45;36	n	0.03	1	31.5	1	31;32	n	0.05	2	34.5	2	29;40	y	0.00	0	21.5	0	18;25	n	0.03	1	31.5	1	32;31	n	0.00	0	20.0	0	19;21	n	0.00	0	16.0	0	15;17	n	0.00	0	30.5	0	28;33	n	0.00	0	14.0	0	16;12	n	0.02	1	44.5	1	39;50	n	ENSMUSG00000024566.11	Atp9b	chr18	protein_coding	ATPase, class II, type 9B
known_NIR_9327	chr18	80920588	80952807	-	80935138	80952807	3pMXE	ENSMUST00000235385.2	known	0.00	0	22	0	22	n	0.00	0	22	0	22	n	0.03	1	36	1	36	n	0.03	1	32	1	32	n	0.05	2	40	2	40	y	0.00	0	25	0	25	n	0.03	1	31	1	31	n	0.00	0	21	0	21	n	0.00	0	17	0	17	n	0.00	0	33	0	33	n	0.00	0	12	0	12	n	0.02	1	50	1	50	n	ENSMUSG00000024566.11	Atp9b	chr18	protein_coding	ATPase, class II, type 9B
known_NIR_9328	chr18	82627600;82628811	82628730;82635835	-	82627600	82635835	cassetteExon	ENSMUST00000171071.9	known	0.54	9.5	8	11;8	8	y	0.33	4.0	8	4;4	8	y	0.10	3.5	30	4;3	30	y	0.36	5.0	9	3;7	9	y	0.27	5.5	15	4;7	15	y	0.44	4.0	5	4;4	5	y	0.43	3.0	4	1;5	4	n	0.14	1.5	9	2;1	9	n	0.19	2.5	11	5;0	11	n	0.42	6.5	9	5;8	9	y	0.33	4.0	8	7;1	8	n	0.16	3.5	18	3;4	18	y	ENSMUSG00000041258.19	Zfp236	chr18	protein_coding	zinc finger protein 236
known_NIR_9329	chr18	82675265	82676128	-	82675302	82676128	A3SS	ENSMUST00000171071.9	known	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.33	3	6	3	6	n	0.00	0	11	0	11	n	0.25	4	12	4	12	y	0.33	2	4	2	4	n	0.12	1	7	1	7	n	0.00	0	4	0	4	n	0.23	3	10	3	10	y	0.00	0	6	0	6	n	0.36	4	7	4	7	y	ENSMUSG00000041258.19	Zfp236	chr18	protein_coding	zinc finger protein 236
known_NIR_9330	chr18	84034366	84104140	-	84034366	84103489	A5SS	ENSMUST00000060303.10	known	0.33	1	2	1	2	n	0.50	2	2	2	2	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.27	3	8	3	8	y	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.00	0	1	0	1	n	0.40	2	3	2	3	n	0.00	0	4	0	4	n	0.20	1	4	1	4	n	ENSMUSG00000046982.12	Tshz1	chr18	protein_coding	teashirt zinc finger family member 1
known_NIR_9331	chr18	84106905	84112535	+	84106498	84112535	A5SS	ENSMUST00000060223.4	known	0.05	3	63	3	63	y	0.08	3	36	3	36	y	0.03	2	66	2	66	y	0.03	3	83	3	83	y	0.02	2	107	2	107	y	0.00	0	53	0	53	n	0.07	5	68	5	68	y	0.00	0	68	0	68	n	0.04	2	55	2	55	y	0.00	0	83	0	83	n	0.00	0	91	0	91	n	0.01	1	100	1	100	n	ENSMUSG00000049090.4	Zadh2	chr18	protein_coding	zinc binding alcohol dehydrogenase, domain containing 2
known_NIR_9332	chr18	84700052	84702477	-	84700052	84703728	A5SS	ENSMUST00000025546.17	known	0.03	1	28	1	28	n	0.09	1	10	1	10	n	0.07	2	26	2	26	y	0.10	3	28	3	28	y	0.10	3	27	3	27	y	0.24	4	13	4	13	y	0.16	4	21	4	21	y	0.06	1	17	1	17	n	0.04	1	27	1	27	n	0.12	4	28	4	28	y	0.06	2	31	2	31	y	0.06	2	29	2	29	y	ENSMUSG00000024644.18	Cndp2	chr18	protein_coding	CNDP dipeptidase 2 (metallopeptidase M20 family)
known_NIR_9333	chr18	84869732;84887841	84887592;84889630	+	84869732	84889630	cassetteExon	ENSMUST00000160180.9	known	0.00	14.0	5258	10;18	5258	y	0.00	11.5	5038	10;13	5038	y	0.00	3.0	1200	2;4	1200	y	0.00	17.0	5167	21;13	5167	y	0.00	10.0	4595	14;6	4595	y	0.00	0.5	1028	1;0	1028	n	0.00	16.5	5444	18;15	5444	y	0.00	6.5	1447	7;6	1447	y	0.00	15.5	5393	19;12	5393	y	0.00	20.5	7645	21;20	7645	y	0.00	21.0	6359	14;28	6359	y	0.00	16.5	5813	18;15	5813	y	ENSMUSG00000024646.15	Cyb5a	chr18	protein_coding	cytochrome b5 type A (microsomal)
known_NIR_9334	chr18	84870125	84889630	+	84869732	84889630	A5SS	ENSMUST00000160180.9	known	0.00	2	5258	2	5258	y	0.00	10	5038	10	5038	y	0.00	0	1200	0	1200	n	0.00	6	5167	6	5167	y	0.00	3	4595	3	4595	y	0.00	0	1028	0	1028	n	0.00	13	5444	13	5444	y	0.00	3	1447	3	1447	y	0.00	6	5393	6	5393	y	0.00	15	7645	15	7645	y	0.00	8	6359	8	6359	y	0.00	2	5813	2	5813	y	ENSMUSG00000024646.15	Cyb5a	chr18	protein_coding	cytochrome b5 type A (microsomal)
known_NIR_9335	chr18	84870125	84889630	+	84887841	84889630	A5SS&ES	ENSMUST00000236742.2	known	0.10	2	18	2	18	y	0.43	10	13	10	13	y	0.00	0	4	0	4	n	0.32	6	13	6	13	y	0.33	3	6	3	6	n	-	-	-	-	-	-	0.46	13	15	13	15	y	0.33	3	6	3	6	n	0.33	6	12	6	12	y	0.43	15	20	15	20	y	0.22	8	28	8	28	y	0.12	2	15	2	15	y	ENSMUSG00000024646.15	Cyb5a	chr18	protein_coding	cytochrome b5 type A (microsomal)
known_NIR_9336	chr18	84891294;84894977	84894959;84895952	+	84891294	84895952	cassetteExon	ENSMUST00000235725.2	known	0.00	13.0	4702	26;0	4702	n	0.00	17.5	4722	33;2	4722	y	0.00	3.5	1117	7;0	1117	n	0.00	12.0	4469	24;0	4469	n	0.00	10.5	4121	21;0	4121	n	0.00	0.0	916	0;0	916	n	0.00	22.5	4896	45;0	4896	n	0.01	7.5	1212	15;0	1212	n	0.00	0.0	4878	0;0	4878	n	0.00	24.5	7167	49;0	7167	n	0.00	17.0	6187	29;5	6187	y	0.00	19.0	5544	38;0	5544	n	ENSMUSG00000024646.15	Cyb5a	chr18	protein_coding	cytochrome b5 type A (microsomal)
known_NIR_9337	chr18	84967577	84968765	-	84967577	84969128	A5SS	ENSMUST00000025547.4	known	0.00	0	59	0	59	n	0.00	0	58	0	58	n	0.00	0	74	0	74	n	0.00	0	64	0	64	n	0.00	0	64	0	64	n	0.04	2	47	2	47	y	0.04	3	66	3	66	y	0.05	2	40	2	40	y	0.00	0	53	0	53	n	0.00	0	82	0	82	n	0.00	0	51	0	51	n	0.03	2	63	2	63	y	ENSMUSG00000024645.6	Timm21	chr18	protein_coding	translocase of inner mitochondrial membrane 21
known_NIR_9338	chr18	88889042	88905116	-	88889042	88905337	A5SS	ENSMUST00000123826.2	known	1.00	5	0	5	0	n	0.87	13	2	13	2	y	0.60	6	4	6	4	y	1.00	13	0	13	0	n	0.78	7	2	7	2	n	1.00	7	0	7	0	n	0.86	18	3	18	3	y	0.75	9	3	9	3	y	0.78	7	2	7	2	n	1.00	16	0	16	0	n	0.71	5	2	5	2	n	0.62	10	6	10	6	y	ENSMUSG00000056153.16	Socs6	chr18	protein_coding	suppressor of cytokine signaling 6
known_NIR_9339	chr18	88889042	88905333	-	88905189	88905333	A3SS&ES	ENSMUST00000237549.2	known	0.86	6	1	6	1	n	0.29	4	10	4	10	y	0.71	12	5	12	5	y	0.25	4	12	4	12	y	0.33	5	10	5	10	y	0.62	8	5	8	5	y	0.35	7	13	7	13	y	0.50	7	7	7	7	y	0.39	7	11	7	11	y	0.48	11	12	11	12	y	0.38	3	5	3	5	n	0.47	7	8	7	8	y	ENSMUSG00000056153.16	Socs6	chr18	protein_coding	suppressor of cytokine signaling 6
known_NIR_9340	chr18	88889042	88905337	-	88889042	88905333	A5SS	ENSMUST00000070116.12	known	0.00	0	6	0	6	n	0.33	2	4	2	4	n	0.25	4	12	4	12	y	0.00	0	4	0	4	n	0.29	2	5	2	5	n	0.00	0	8	0	8	n	0.30	3	7	3	7	y	0.30	3	7	3	7	y	0.22	2	7	2	7	n	0.00	0	11	0	11	n	0.40	2	3	2	3	n	0.46	6	7	6	7	y	ENSMUSG00000056153.16	Socs6	chr18	protein_coding	suppressor of cytokine signaling 6
known_NIR_9341	chr18	88889042;88905176	88905116;88905333	-	88889042	88905333	cassetteExon	ENSMUST00000070116.12	known	0.37	3.5	6	5;2	6	y	0.64	7.0	4	13;1	4	n	0.23	3.5	12	6;1	12	n	0.65	7.5	4	13;2	4	y	0.41	3.5	5	7;0	5	n	0.30	3.5	8	7;0	8	n	0.60	10.5	7	18;3	7	y	0.42	5.0	7	9;1	7	n	0.36	4.0	7	7;1	7	n	0.48	10.0	11	16;4	11	y	0.45	2.5	3	5;0	3	n	0.44	5.5	7	10;1	7	n	ENSMUSG00000056153.16	Socs6	chr18	protein_coding	suppressor of cytokine signaling 6
known_NIR_9342	chr18	88889042;88905189	88905116;88905333	-	88889042	88905333	cassetteExon	ENSMUST00000070116.12	known	0.33	3.0	6	5;1	6	n	0.74	11.5	4	13;10	4	y	0.31	5.5	12	6;5	12	y	0.76	12.5	4	13;12	4	y	0.63	8.5	5	7;10	5	y	0.43	6.0	8	7;5	8	y	0.69	15.5	7	18;13	7	y	0.53	8.0	7	9;7	7	y	0.56	9.0	7	7;11	7	y	0.56	14.0	11	16;12	11	y	0.62	5.0	3	5;5	3	y	0.56	9.0	7	10;8	7	y	ENSMUSG00000056153.16	Socs6	chr18	protein_coding	suppressor of cytokine signaling 6
known_NIR_9343	chr18	88905176	88905333	-	88905189	88905333	A3SS	ENSMUST00000237549.2	known	0.67	2	1	2	1	n	0.09	1	10	1	10	n	0.17	1	5	1	5	n	0.14	2	12	2	12	y	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.19	3	13	3	13	y	0.12	1	7	1	7	n	0.08	1	11	1	11	n	0.25	4	12	4	12	y	0.00	0	5	0	5	n	0.11	1	8	1	8	n	ENSMUSG00000056153.16	Socs6	chr18	protein_coding	suppressor of cytokine signaling 6
known_NIR_9344	chr18	90603675	90607080	+	90598023	90607080	A5SS	ENSMUST00000211710.2	known	0.25	2	6	2	6	n	0.00	0	5	0	5	n	0.18	2	9	2	9	y	0.00	0	10	0	10	n	0.00	0	17	0	17	n	0.00	0	7	0	7	n	0.00	0	19	0	19	n	0.00	0	12	0	12	n	0.10	1	9	1	9	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.08	1	11	1	11	n	ENSMUSG00000110277.3	Gm45871	chr18	protein_coding	predicted gene 45871
known_NIR_9345	chr18	90607206	90608955	+	90607206	90607398	3pMXE	ENSMUST00000209821.2	known	0.14	2	12	2	12	y	0.12	1	7	1	7	n	0.08	1	11	1	11	n	0.00	0	17	0	17	n	0.08	2	22	2	22	y	0.22	2	7	2	7	n	0.00	0	13	0	13	n	0.14	2	12	2	12	y	0.00	0	14	0	14	n	0.22	2	7	2	7	n	0.00	0	13	0	13	n	0.11	2	17	2	17	y	ENSMUSG00000110277.3	Gm45871	chr18	protein_coding	predicted gene 45871
known_NIR_9346	chr18	90607206	90608955	+	90607206;90607458	90607398;90608955	ES	ENSMUST00000211710.2	known	0.14	2	12.5	2	12;13	y	0.13	1	6.5	1	7;6	n	0.09	1	10.0	1	11;9	n	0.00	0	13.5	0	17;10	n	0.08	2	24.0	2	22;26	y	0.31	2	4.5	2	7;2	y	0.00	0	13.0	0	13;13	n	0.20	2	8.0	2	12;4	y	0.00	0	13.0	0	14;12	n	0.22	2	7.0	2	7;7	y	0.00	0	11.0	0	13;9	n	0.10	2	18.0	2	17;19	y	ENSMUSG00000110277.3	Gm45871	chr18	protein_coding	predicted gene 45871
known_NIR_9347	chr18	9377828	9449518	-	9377828;9386809	9386735;9449518	ES	ENSMUST00000053917.6	known	0.00	0	96.5	0	101;92	n	0.00	0	80.0	0	83;77	n	0.02	3	135.5	3	134;137	y	0.03	4	114.5	4	128;101	y	0.00	0	173.5	0	197;150	n	0.04	3	69.5	3	71;68	y	0.01	1	146.0	1	160;132	n	0.02	2	83.5	2	77;90	y	0.03	2	73.0	2	74;72	y	0.01	1	158.5	1	161;156	n	0.00	0	100.5	0	99;102	n	0.02	3	136.0	3	152;120	y	ENSMUSG00000024286.9	Ccny	chr18	protein_coding	cyclin Y
known_NIR_9348	chr18	9377828	9449518	-	9386809	9449518	3pMXE	ENSMUST00000234382.2	known	0.00	0	92	0	92	n	0.00	0	77	0	77	n	0.02	3	137	3	137	y	0.04	4	101	4	101	y	0.00	0	150	0	150	n	0.04	3	68	3	68	y	0.01	1	132	1	132	n	0.02	2	90	2	90	y	0.03	2	72	2	72	y	0.01	1	156	1	156	n	0.00	0	102	0	102	n	0.02	3	120	3	120	y	ENSMUSG00000024286.9	Ccny	chr18	protein_coding	cyclin Y
known_NIR_9349	chr19	10005001	10007514	+	10005001	10005649	3pMXE	ENSMUST00000131407.2	known	0.74	14	5	14	5	y	0.50	4	4	4	4	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.75	3	1	3	1	n	0.50	1	1	1	1	n	0.67	2	1	2	1	n	0.33	1	2	1	2	n	0.50	1	1	1	1	n	0.08	1	12	1	12	n	0.75	6	2	6	2	n	0.88	7	1	7	1	n	ENSMUSG00000024663.21	Rab3il1	chr19	protein_coding	RAB3A interacting protein (rabin3)-like 1
known_NIR_9350	chr19	10005001	10007514	+	10005001;10005867	10005649;10007514	ES	ENSMUST00000121418.8	known	0.76	14	4.5	14	5;4	y	0.67	4	2.0	4	4;0	n	0.00	0	6.0	0	4;8	n	0.00	0	4.5	0	2;7	n	0.33	3	6.0	3	1;11	n	0.67	1	0.5	1	1;0	n	0.57	2	1.5	2	1;2	n	0.40	1	1.5	1	2;1	n	0.50	1	1.0	1	1;1	n	0.12	1	7.5	1	12;3	n	0.71	6	2.5	6	2;3	y	0.67	7	3.5	7	1;6	n	ENSMUSG00000024663.21	Rab3il1	chr19	protein_coding	RAB3A interacting protein (rabin3)-like 1
known_NIR_9351	chr19	10047988	10048443	-	10047988	10059929	A5SS	ENSMUST00000025567.9	known	0.01	6	647	6	647	y	0.01	5	385	5	385	y	0.05	10	181	10	181	y	0.01	11	828	11	828	y	0.02	13	635	13	635	y	0.01	3	207	3	207	y	0.01	10	675	10	675	y	0.05	11	226	11	226	y	0.01	5	861	5	861	y	0.01	8	1272	8	1272	y	0.00	0	1010	0	1010	n	0.01	7	1309	7	1309	y	ENSMUSG00000024665.9	Fads2	chr19	protein_coding	fatty acid desaturase 2
known_NIR_9352	chr19	10047988	10052481	-	10047988	10048443	5pMXE	ENSMUST00000238023.2	known	0.25	2	6	2	6	n	0.00	0	5	0	5	n	0.17	2	10	2	10	y	0.00	0	11	0	11	n	0.07	1	13	1	13	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.20	2	8	2	8	y	-	-	-	-	-	-	0.00	0	7	0	7	n	ENSMUSG00000024665.9	Fads2	chr19	protein_coding	fatty acid desaturase 2
known_NIR_9353	chr19	10047988;10052516	10052481;10059929	-	10047988	10059929	cassetteExon	ENSMUST00000025567.9	known	0.00	1.0	647	2;0	647	n	0.00	0.0	385	0;0	385	n	0.01	1.5	181	2;1	181	n	0.00	0.0	828	0;0	828	n	0.00	2.0	635	1;3	635	n	0.00	0.0	207	0;0	207	n	0.00	0.5	675	0;1	675	n	0.00	0.0	226	0;0	226	n	0.00	0.0	861	0;0	861	n	0.00	2.5	1272	2;3	1272	y	0.00	0.0	1010	0;0	1010	n	0.00	0.5	1309	0;1	1309	n	ENSMUSG00000024665.9	Fads2	chr19	protein_coding	fatty acid desaturase 2
known_NIR_9354	chr19	10160628	10163049	+	10160628	10162291	A3SS&ES	ENSMUST00000235515.2	known	0.00	0	267	0	267	n	0.00	0	122	0	122	n	0.00	0	132	0	132	n	0.01	3	363	3	363	y	0.00	0	334	0	334	n	0.00	0	124	0	124	n	0.00	0	276	0	276	n	0.00	0	176	0	176	n	0.01	2	300	2	300	y	0.00	0	440	0	440	n	0.00	0	312	0	312	n	0.00	2	547	2	547	y	ENSMUSG00000010663.6	Fads1	chr19	protein_coding	fatty acid desaturase 1
known_NIR_9355	chr19	10160628	10163049	+	10160628;10162401	10162291;10163049	ES	ENSMUST00000010807.6	known	0.00	0	282.5	0	267;298	n	0.00	0	139.0	0	122;156	n	0.00	0	149.0	0	132;166	n	0.01	3	394.0	3	363;425	y	0.00	0	382.5	0	334;431	n	0.00	0	130.0	0	124;136	n	0.00	0	306.0	0	276;336	n	0.00	0	186.5	0	176;197	n	0.01	2	322.0	2	300;344	y	0.00	0	482.0	0	440;524	n	0.00	0	345.0	0	312;378	n	0.00	2	603.0	2	547;659	y	ENSMUSG00000010663.6	Fads1	chr19	protein_coding	fatty acid desaturase 1
known_NIR_9356	chr19	10161073	10162291	+	10160628	10162291	A5SS	ENSMUST00000010807.6	known	0.00	0	267	0	267	n	0.00	0	122	0	122	n	0.04	5	132	5	132	y	0.00	0	363	0	363	n	0.02	8	334	8	334	y	0.06	8	124	8	124	y	0.01	2	276	2	276	y	0.01	1	176	1	176	n	0.00	1	300	1	300	n	0.01	5	440	5	440	y	0.00	0	312	0	312	n	0.00	1	547	1	547	n	ENSMUSG00000010663.6	Fads1	chr19	protein_coding	fatty acid desaturase 1
known_NIR_9357	chr19	10162401	10162942	+	10162401	10163049	A3SS	ENSMUST00000010807.6	known	0.00	0	298	0	298	n	0.00	0	156	0	156	n	0.01	1	166	1	166	n	0.00	0	425	0	425	n	0.00	2	431	2	431	y	0.01	1	136	1	136	n	0.00	0	336	0	336	n	0.00	0	197	0	197	n	0.00	0	344	0	344	n	0.00	0	524	0	524	n	0.00	0	378	0	378	n	0.00	0	659	0	659	n	ENSMUSG00000010663.6	Fads1	chr19	protein_coding	fatty acid desaturase 1
known_NIR_9358	chr19	10178461	10181063	-	10178461	10181052	A5SS	ENSMUST00000156291.2	known	0.33	1	2	1	2	n	0.00	0	6	0	6	n	0.25	7	21	7	21	y	0.17	2	10	2	10	y	0.09	1	10	1	10	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.27	3	8	3	8	y	0.00	0	6	0	6	n	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	ENSMUSG00000024742.16	Fen1	chr19	protein_coding	flap structure specific endonuclease 1
known_NIR_9359	chr19	10178461	10181063	-	10178461	10181168	A5SS	ENSMUST00000116542.9	known	0.20	1	4	1	4	n	-	-	-	-	-	-	0.33	7	14	7	14	y	0.50	2	2	2	2	n	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	1.00	3	0	3	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	ENSMUSG00000024742.16	Fen1	chr19	protein_coding	flap structure specific endonuclease 1
known_NIR_9360	chr19	10178461	10181168	-	10178461	10181052	A5SS	ENSMUST00000156291.2	known	0.67	4	2	4	2	n	0.00	0	6	0	6	n	0.40	14	21	14	21	y	0.17	2	10	2	10	y	0.33	5	10	5	10	y	0.36	5	9	5	9	y	0.18	2	9	2	9	y	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.40	4	6	4	6	y	0.58	7	5	7	5	y	ENSMUSG00000024742.16	Fen1	chr19	protein_coding	flap structure specific endonuclease 1
known_NIR_9361	chr19	10181628	10183788	+	10183488	10183788	5pMXE	ENSMUST00000166412.2	known	0.99	281	4	281	4	y	0.98	315	6	315	6	y	0.99	515	7	515	7	y	1.00	221	1	221	1	n	0.98	402	8	402	8	y	0.98	379	7	379	7	y	0.99	349	5	349	5	y	0.98	298	7	298	7	y	1.00	250	0	250	0	n	0.99	322	2	322	2	y	1.00	314	0	314	0	n	0.98	263	5	263	5	y	ENSMUSG00000036372.15	Tmem258	chr19	protein_coding	transmembrane protein 258
known_NIR_9362	chr19	10181628;10183488	10183114;10183788	+	10181628	10183788	cassetteExon	ENSMUST00000040372.14	known	0.01	4.0	281	4;4	281	y	0.02	5.0	315	4;6	315	y	0.01	4.5	515	2;7	515	y	0.00	0.5	221	0;1	221	n	0.01	4.5	402	1;8	402	n	0.01	5.0	379	3;7	379	y	0.01	3.5	349	2;5	349	y	0.01	4.0	298	1;7	298	n	0.01	1.5	250	3;0	250	n	0.01	3.5	322	5;2	322	y	0.00	0.5	314	1;0	314	n	0.01	4.0	263	3;5	263	y	ENSMUSG00000036372.15	Tmem258	chr19	protein_coding	transmembrane protein 258
known_NIR_9363	chr19	10192466	10193106	-	10192469	10193106	A3SS	ENSMUST00000190922.7	known	0.44	14	18	14	18	y	0.58	14	10	14	10	y	0.43	21	28	21	28	y	0.58	14	10	14	10	y	0.39	20	31	20	31	y	0.47	7	8	7	8	y	0.36	12	21	12	21	y	0.47	15	17	15	17	y	0.32	8	17	8	17	y	0.48	16	17	16	17	y	0.37	13	22	13	22	y	0.47	20	23	20	23	y	ENSMUSG00000036098.16	Myrf	chr19	protein_coding	myelin regulatory factor
known_NIR_9364	chr19	10192466	10193106	-	10192718	10193106	A3SS&ES	ENSMUST00000186056.7	known	1.00	14	0	14	0	n	0.88	14	2	14	2	y	0.95	21	1	21	1	n	0.93	14	1	14	1	n	1.00	20	0	20	0	n	1.00	7	0	7	0	n	0.92	12	1	12	1	n	1.00	15	0	15	0	n	0.89	8	1	8	1	n	0.94	16	1	16	1	n	1.00	13	0	13	0	n	0.95	20	1	20	1	n	ENSMUSG00000036098.16	Myrf	chr19	protein_coding	myelin regulatory factor
known_NIR_9365	chr19	10192469	10193106	-	10192718	10193106	A3SS&ES	ENSMUST00000088013.12	known	1.00	18	0	18	0	n	0.83	10	2	10	2	y	0.97	28	1	28	1	n	0.91	10	1	10	1	n	1.00	31	0	31	0	n	1.00	8	0	8	0	n	0.95	21	1	21	1	n	1.00	17	0	17	0	n	0.94	17	1	17	1	n	0.94	17	1	17	1	n	1.00	22	0	22	0	n	0.96	23	1	23	1	n	ENSMUSG00000036098.16	Myrf	chr19	protein_coding	myelin regulatory factor
known_NIR_9366	chr19	10480493;10482889	10482798;10494344	-	10480493	10494344	cassetteExon	ENSMUST00000025570.8	known	0.02	1.5	97	1;2	97	n	0.01	1.0	74	0;2	74	n	0.00	0.0	94	0;0	94	n	0.02	1.5	80	2;1	80	n	0.00	0.5	138	0;1	138	n	0.00	0.0	55	0;0	55	n	0.01	1.0	126	2;0	126	n	0.00	0.0	44	0;0	44	n	0.00	0.0	74	0;0	74	n	0.01	1.5	133	2;1	133	n	0.02	2.0	99	2;2	99	y	0.00	0.0	84	0;0	84	n	ENSMUSG00000024668.9	Sdhaf2	chr19	protein_coding	succinate dehydrogenase complex assembly factor 2
known_NIR_9367	chr19	10494453	10494684	-	10494453	10494533	A5SS	ENSMUST00000025570.8	known	0.16	16	81	16	81	y	0.06	5	81	5	81	y	0.09	9	89	9	89	y	0.03	3	92	3	92	y	0.10	11	98	11	98	y	0.11	6	51	6	51	y	0.09	9	89	9	89	y	0.04	2	53	2	53	y	0.10	9	79	9	79	y	0.09	12	118	12	118	y	0.07	6	80	6	80	y	0.11	10	78	10	78	y	ENSMUSG00000024668.9	Sdhaf2	chr19	protein_coding	succinate dehydrogenase complex assembly factor 2
known_NIR_9368	chr19	10494750;10498422	10498313;10502423	-	10494750	10502423	cassetteExon	ENSMUST00000025570.8	known	0.01	0.5	56	0;1	56	n	0.00	0.0	28	0;0	28	n	0.03	1.5	47	3;0	47	n	0.05	2.0	41	4;0	41	n	0.00	0.0	54	0;0	54	n	0.10	3.0	28	3;3	28	y	0.09	5.5	54	4;7	54	y	0.02	0.5	31	1;0	31	n	0.03	1.5	43	3;0	43	n	0.02	1.0	54	2;0	54	n	0.02	1.0	48	2;0	48	n	0.03	1.5	46	2;1	46	n	ENSMUSG00000024668.9	Sdhaf2	chr19	protein_coding	succinate dehydrogenase complex assembly factor 2
known_NIR_9369	chr19	10502964	10503316	+	10502691	10503316	A5SS	ENSMUST00000235162.2	known	0.50	5	5	5	5	y	0.29	2	5	2	5	n	0.30	6	14	6	14	y	0.35	6	11	6	11	y	0.60	6	4	6	4	y	0.50	3	3	3	3	n	0.10	1	9	1	9	n	0.00	0	12	0	12	n	0.40	4	6	4	6	y	0.17	2	10	2	10	y	0.45	5	6	5	6	y	0.24	4	13	4	13	y	ENSMUSG00000034820.5	Cpsf7	chr19	protein_coding	cleavage and polyadenylation specific factor 7
known_NIR_9370	chr19	10509363	10509625	+	10509363	10509622	A3SS	ENSMUST00000236706.2	known	0.25	2	6	2	6	n	0.00	0	5	0	5	n	0.21	3	11	3	11	y	0.67	4	2	4	2	n	0.44	4	5	4	5	n	0.00	0	1	0	1	n	0.17	1	5	1	5	n	0.00	0	6	0	6	n	0.25	1	3	1	3	n	0.50	3	3	3	3	n	1.00	2	0	2	0	n	0.67	2	1	2	1	n	ENSMUSG00000034820.5	Cpsf7	chr19	protein_coding	cleavage and polyadenylation specific factor 7
known_NIR_9371	chr19	10509363;10509560	10509495;10510184	+	10509363	10510184	cassetteExon	ENSMUST00000235162.2	known	0.13	2.0	13	1;3	13	n	0.23	1.5	5	2;1	5	n	0.12	3.5	26	3;4	26	y	0.33	5.5	11	5;6	11	y	0.45	13.0	16	10;16	16	y	0.25	2.0	6	3;1	6	n	0.32	7.0	15	5;9	15	y	0.30	3.5	8	4;3	8	y	0.21	3.5	13	0;7	13	n	0.15	4.0	22	4;4	22	y	0.36	4.5	8	4;5	8	y	0.35	7.5	14	8;7	14	y	ENSMUSG00000034820.5	Cpsf7	chr19	protein_coding	cleavage and polyadenylation specific factor 7
known_NIR_9372	chr19	10509363;10509698	10509495;10510184	+	10509363	10510184	cassetteExon	ENSMUST00000235162.2	known	0.24	4.0	13	1;7	13	n	0.29	2.0	5	2;2	5	n	0.17	5.5	26	3;8	26	y	0.35	6.0	11	5;7	11	y	0.38	10.0	16	10;10	16	y	0.43	4.5	6	3;6	6	y	0.32	7.0	15	5;9	15	y	0.33	4.0	8	4;4	8	y	0.13	2.0	13	0;4	13	n	0.14	3.5	22	4;3	22	y	0.30	3.5	8	4;3	8	y	0.30	6.0	14	8;4	14	y	ENSMUSG00000034820.5	Cpsf7	chr19	protein_coding	cleavage and polyadenylation specific factor 7
known_NIR_9373	chr19	10509363;10509698	10509622;10510184	+	10509363	10510184	cassetteExon	ENSMUST00000235162.2	known	0.33	6.5	13	6;7	13	y	0.41	3.5	5	5;2	5	y	0.27	9.5	26	11;8	26	y	0.29	4.5	11	2;7	11	y	0.32	7.5	16	5;10	16	y	0.37	3.5	6	1;6	6	n	0.32	7.0	15	5;9	15	y	0.38	5.0	8	6;4	8	y	0.21	3.5	13	3;4	13	y	0.12	3.0	22	3;3	22	y	0.16	1.5	8	0;3	8	n	0.15	2.5	14	1;4	14	n	ENSMUSG00000034820.5	Cpsf7	chr19	protein_coding	cleavage and polyadenylation specific factor 7
known_NIR_9374	chr19	10509363;10509698	10509622;10510184	+	10509363;10509560	10509495;10510184	MXE	ENSMUST00000236206.2	known	0.76	6.5	2.0	6;7	1;3	n	0.70	3.5	1.5	5;2	2;1	n	0.73	9.5	3.5	11;8	3;4	y	0.45	4.5	5.5	2;7	5;6	y	0.37	7.5	13.0	5;10	10;16	y	0.64	3.5	2.0	1;6	3;1	n	0.50	7.0	7.0	5;9	5;9	y	0.59	5.0	3.5	6;4	4;3	y	0.50	3.5	3.5	3;4	0;7	n	0.43	3.0	4.0	3;3	4;4	y	0.25	1.5	4.5	0;3	4;5	n	0.25	2.5	7.5	1;4	8;7	n	ENSMUSG00000034820.5	Cpsf7	chr19	protein_coding	cleavage and polyadenylation specific factor 7
known_NIR_9375	chr19	10509363;10509698	10509625;10510184	+	10509363	10510184	cassetteExon	ENSMUST00000235162.2	known	0.26	4.5	13	2;7	13	y	0.17	1.0	5	0;2	5	n	0.17	5.5	26	3;8	26	y	0.33	5.5	11	4;7	11	y	0.30	7.0	16	4;10	16	y	0.33	3.0	6	0;6	6	n	0.25	5.0	15	1;9	15	n	0.20	2.0	8	0;4	8	n	0.16	2.5	13	1;4	13	n	0.12	3.0	22	3;3	22	y	0.24	2.5	8	2;3	8	y	0.18	3.0	14	2;4	14	y	ENSMUSG00000034820.5	Cpsf7	chr19	protein_coding	cleavage and polyadenylation specific factor 7
known_NIR_9376	chr19	10509363;10509698	10509625;10510184	+	10509363;10509560	10509495;10510184	MXE	ENSMUST00000236206.2	known	0.69	4.5	2.0	2;7	1;3	n	0.40	1.0	1.5	0;2	2;1	n	0.61	5.5	3.5	3;8	3;4	y	0.50	5.5	5.5	4;7	5;6	y	0.35	7.0	13.0	4;10	10;16	y	0.60	3.0	2.0	0;6	3;1	n	0.42	5.0	7.0	1;9	5;9	n	0.36	2.0	3.5	0;4	4;3	n	0.42	2.5	3.5	1;4	0;7	n	0.43	3.0	4.0	3;3	4;4	y	0.36	2.5	4.5	2;3	4;5	y	0.29	3.0	7.5	2;4	8;7	y	ENSMUSG00000034820.5	Cpsf7	chr19	protein_coding	cleavage and polyadenylation specific factor 7
known_NIR_9377	chr19	10510802	10512468	+	10510829	10512468	A5SS	ENSMUST00000235162.2	known	0.28	8	21	8	21	y	0.33	8	16	8	16	y	0.54	19	16	19	16	y	0.24	5	16	5	16	y	0.29	10	24	10	24	y	0.58	7	5	7	5	y	0.45	14	17	14	17	y	0.42	8	11	8	11	y	0.45	9	11	9	11	y	0.31	8	18	8	18	y	0.42	5	7	5	7	y	0.33	11	22	11	22	y	ENSMUSG00000034820.5	Cpsf7	chr19	protein_coding	cleavage and polyadenylation specific factor 7
known_NIR_9378	chr19	10532528	10533077	-	10532528	10533063	A5SS	ENSMUST00000145210.8	known	0.50	3	3	3	3	n	0.25	2	6	2	6	n	0.29	2	5	2	5	n	0.75	6	2	6	2	n	0.50	8	8	8	8	y	0.25	3	9	3	9	y	0.38	3	5	3	5	n	0.25	2	6	2	6	n	0.33	3	6	3	6	n	0.50	9	9	9	9	y	0.50	2	2	2	2	n	0.40	4	6	4	6	y	ENSMUSG00000024667.13	Tmem216	chr19	protein_coding	transmembrane protein 216
known_NIR_9379	chr19	10552299	10552604	-	10552372	10552604	A3SS	ENSMUST00000236099.2	known	0.18	2	9	2	9	y	0.00	0	5	0	5	n	0.05	1	20	1	20	n	0.00	0	9	0	9	n	0.40	6	9	6	9	y	0.11	1	8	1	8	n	0.17	2	10	2	10	y	0.60	3	2	3	2	n	0.18	2	9	2	9	y	0.00	0	7	0	7	n	0.14	1	6	1	6	n	0.50	6	6	6	6	y	ENSMUSG00000024666.7	Tmem138	chr19	protein_coding	transmembrane protein 138
known_NIR_9380	chr19	10552875	10554333	-	10552875	10554448	A5SS	ENSMUST00000025568.3	known	0.00	0	1	0	1	n	0.71	5	2	5	2	n	0.25	1	3	1	3	n	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.73	8	3	8	3	y	0.40	2	3	2	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.67	2	1	2	1	n	0.00	0	4	0	4	n	ENSMUSG00000024666.7	Tmem138	chr19	protein_coding	transmembrane protein 138
known_NIR_9381	chr19	10554927	10556346	+	10555447	10556346	A5SS	ENSMUST00000237814.2	known	0.00	0	25	0	25	n	0.11	2	16	2	16	y	0.05	1	19	1	19	n	0.04	1	22	1	22	n	0.00	0	30	0	30	n	0.00	0	9	0	9	n	0.04	1	23	1	23	n	0.00	0	24	0	24	n	0.00	0	23	0	23	n	0.08	4	44	4	44	y	0.09	2	20	2	20	y	0.05	1	21	1	21	n	ENSMUSG00000034445.9	Cyb561a3	chr19	protein_coding	cytochrome b561 family, member A3
known_NIR_9382	chr19	10554927	10557827	+	10555447	10557827	A5SS	ENSMUST00000168445.2	known	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.08	1	11	1	11	n	0.15	2	11	2	11	y	0.11	2	16	2	16	y	0.71	5	2	5	2	n	0.25	4	12	4	12	y	0.12	1	7	1	7	n	0.00	0	7	0	7	n	0.15	3	17	3	17	y	0.38	3	5	3	5	n	0.00	0	8	0	8	n	ENSMUSG00000034445.9	Cyb561a3	chr19	protein_coding	cytochrome b561 family, member A3
known_NIR_9383	chr19	10554927	10557827	+	10556438	10557827	A5SS&ES	ENSMUST00000237814.2	known	0.00	0	30	0	30	n	0.00	0	19	0	19	n	0.03	1	33	1	33	n	0.05	2	36	2	36	y	0.04	2	44	2	44	y	0.16	5	26	5	26	y	0.08	4	48	4	48	y	0.03	1	32	1	32	n	0.00	0	37	0	37	n	0.06	3	49	3	49	y	0.15	3	17	3	17	y	0.00	0	27	0	27	n	ENSMUSG00000034445.9	Cyb561a3	chr19	protein_coding	cytochrome b561 family, member A3
known_NIR_9384	chr19	10554927;10555257	10555098;10556346	+	10554927	10556346	cassetteExon	ENSMUST00000236743.2	known	1.00	2.5	0	5;0	0	n	0.20	0.5	2	1;0	2	n	0.88	7.5	1	15;0	1	n	0.85	5.5	1	10;1	1	n	1.00	8.0	0	13;3	0	n	1.00	1.5	0	3;0	0	n	0.85	5.5	1	10;1	1	n	1.00	3.5	0	7;0	0	n	1.00	2.0	0	4;0	0	n	0.43	3.0	4	6;0	4	n	0.75	6.0	2	10;2	2	y	0.83	5.0	1	9;1	1	n	ENSMUSG00000034445.9	Cyb561a3	chr19	protein_coding	cytochrome b561 family, member A3
known_NIR_9385	chr19	10554927;10555447	10555098;10556346	+	10554927	10556346	cassetteExon	ENSMUST00000236743.2	known	1.00	15.0	0	5;25	0	n	0.81	8.5	2	1;16	2	n	0.94	17.0	1	15;19	1	n	0.94	16.0	1	10;22	1	n	1.00	21.5	0	13;30	0	n	1.00	6.0	0	3;9	0	n	0.94	16.5	1	10;23	1	n	1.00	15.5	0	7;24	0	n	1.00	13.5	0	4;23	0	n	0.86	25.0	4	6;44	4	y	0.88	15.0	2	10;20	2	y	0.94	15.0	1	9;21	1	n	ENSMUSG00000034445.9	Cyb561a3	chr19	protein_coding	cytochrome b561 family, member A3
known_NIR_9386	chr19	10554927;10555447	10555098;10557827	+	10554927	10557827	cassetteExon	ENSMUST00000237564.2	known	1.00	8.0	0	5;11	0	n	1.00	2.0	0	1;3	0	n	0.93	13.0	1	15;11	1	n	0.84	10.5	2	10;11	2	y	0.88	14.5	2	13;16	2	y	0.33	2.5	5	3;2	5	y	0.73	11.0	4	10;12	4	y	0.88	7.0	1	7;7	1	n	1.00	5.5	0	4;7	0	n	0.79	11.5	3	6;17	3	y	0.71	7.5	3	10;5	3	y	1.00	8.5	0	9;8	0	n	ENSMUSG00000034445.9	Cyb561a3	chr19	protein_coding	cytochrome b561 family, member A3
known_NIR_9387	chr19	10554927;10555447	10555098;10557827	+	10554927;10556438	10556346;10557827	MXE	ENSMUST00000236743.2	known	0.35	8.0	15.0	5;11	0;30	n	0.16	2.0	10.5	1;3	2;19	n	0.43	13.0	17.0	15;11	1;33	n	0.36	10.5	18.5	10;11	1;36	n	0.40	14.5	22.0	13;16	0;44	n	0.16	2.5	13.0	3;2	0;26	n	0.31	11.0	24.5	10;12	1;48	n	0.30	7.0	16.0	7;7	0;32	n	0.23	5.5	18.5	4;7	0;37	n	0.30	11.5	26.5	6;17	4;49	y	0.44	7.5	9.5	10;5	2;17	y	0.38	8.5	14.0	9;8	1;27	n	ENSMUSG00000034445.9	Cyb561a3	chr19	protein_coding	cytochrome b561 family, member A3
known_NIR_9388	chr19	10554927;10556438	10556346;10557827	+	10554927	10557827	cassetteExon	ENSMUST00000237564.2	known	1.00	15.0	0	0;30	0	n	1.00	10.5	0	2;19	0	n	0.94	17.0	1	1;33	1	n	0.90	18.5	2	1;36	2	n	0.92	22.0	2	0;44	2	n	0.72	13.0	5	0;26	5	n	0.86	24.5	4	1;48	4	n	0.94	16.0	1	0;32	1	n	1.00	18.5	0	0;37	0	n	0.90	26.5	3	4;49	3	y	0.76	9.5	3	2;17	3	y	1.00	14.0	0	1;27	0	n	ENSMUSG00000034445.9	Cyb561a3	chr19	protein_coding	cytochrome b561 family, member A3
known_NIR_9389	chr19	10555257	10556346	+	10555447	10556346	A5SS	ENSMUST00000237814.2	known	0.00	0	25	0	25	n	0.00	0	16	0	16	n	0.00	0	19	0	19	n	0.04	1	22	1	22	n	0.09	3	30	3	30	y	0.00	0	9	0	9	n	0.04	1	23	1	23	n	0.00	0	24	0	24	n	0.00	0	23	0	23	n	0.00	0	44	0	44	n	0.09	2	20	2	20	y	0.05	1	21	1	21	n	ENSMUSG00000034445.9	Cyb561a3	chr19	protein_coding	cytochrome b561 family, member A3
known_NIR_9390	chr19	10555447	10557827	+	10555447;10556438	10556346;10557827	ES	ENSMUST00000237814.2	known	0.29	11	27.5	11	25;30	y	0.15	3	17.5	3	16;19	y	0.30	11	26.0	11	19;33	y	0.28	11	29.0	11	22;36	y	0.30	16	37.0	16	30;44	y	0.10	2	17.5	2	9;26	y	0.25	12	35.5	12	23;48	y	0.20	7	28.0	7	24;32	y	0.19	7	30.0	7	23;37	y	0.27	17	46.5	17	44;49	y	0.21	5	18.5	5	20;17	y	0.25	8	24.0	8	21;27	y	ENSMUSG00000034445.9	Cyb561a3	chr19	protein_coding	cytochrome b561 family, member A3
known_NIR_9391	chr19	10555447	10557827	+	10556438	10557827	A5SS&ES	ENSMUST00000235271.2	known	0.27	11	30	11	30	y	0.14	3	19	3	19	y	0.25	11	33	11	33	y	0.23	11	36	11	36	y	0.27	16	44	16	44	y	0.07	2	26	2	26	y	0.20	12	48	12	48	y	0.18	7	32	7	32	y	0.16	7	37	7	37	y	0.26	17	49	17	49	y	0.23	5	17	5	17	y	0.23	8	27	8	27	y	ENSMUSG00000034445.9	Cyb561a3	chr19	protein_coding	cytochrome b561 family, member A3
known_NIR_9392	chr19	10559860	10564055	+	10559860;10562754	10562546;10564055	ES	ENSMUST00000237814.2	known	0.00	0	39.5	0	38;41	n	0.05	2	35.5	2	32;39	y	0.00	0	33.5	0	26;41	n	0.00	0	41.0	0	40;42	n	0.01	1	75.0	1	71;79	n	0.00	0	25.0	0	23;27	n	0.00	0	56.0	0	35;77	n	0.00	0	40.5	0	34;47	n	0.00	0	36.5	0	31;42	n	0.00	0	57.5	0	47;68	n	0.00	0	29.0	0	32;26	n	0.00	0	50.5	0	39;62	n	ENSMUSG00000034445.9	Cyb561a3	chr19	protein_coding	cytochrome b561 family, member A3
known_NIR_9393	chr19	10565342	10566493	+	10565342	10565889	A3SS	ENSMUST00000237814.2	known	0.09	4	40	4	40	y	0.07	2	25	2	25	y	0.00	0	34	0	34	n	0.00	0	44	0	44	n	0.07	6	76	6	76	y	0.00	0	17	0	17	n	0.08	4	49	4	49	y	0.06	2	34	2	34	y	0.11	4	31	4	31	y	0.18	8	37	8	37	y	0.03	1	29	1	29	n	0.02	1	40	1	40	n	ENSMUSG00000034445.9	Cyb561a3	chr19	protein_coding	cytochrome b561 family, member A3
known_NIR_9394	chr19	10565342	10572546	+	10565342	10565889	3pMXE	ENSMUST00000237814.2	known	0.00	0	40	0	40	n	0.00	0	25	0	25	n	0.00	0	34	0	34	n	0.00	0	44	0	44	n	0.00	0	76	0	76	n	0.00	0	17	0	17	n	0.00	0	49	0	49	n	0.00	0	34	0	34	n	0.00	0	31	0	31	n	0.07	3	37	3	37	y	0.00	0	29	0	29	n	0.00	0	40	0	40	n	ENSMUSG00000034445.9	Cyb561a3	chr19	protein_coding	cytochrome b561 family, member A3
known_NIR_9395	chr19	10565342	10572546	+	10565342	10566493	3pMXE	ENSMUST00000237641.2	known	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.27	3	8	3	8	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000034445.9	Cyb561a3	chr19	protein_coding	cytochrome b561 family, member A3
known_NIR_9396	chr19	10570153	10570511	-	10566210	10570511	A3SS	ENSMUST00000237788.2	known	0.99	499	4	499	4	y	1.00	574	0	574	0	n	1.00	654	0	654	0	n	1.00	686	0	686	0	n	0.99	594	3	594	3	y	1.00	297	0	297	0	n	0.99	593	4	593	4	y	0.98	270	6	270	6	y	0.99	382	3	382	3	y	0.99	758	10	758	10	y	1.00	583	1	583	1	n	0.99	517	3	517	3	y	ENSMUSG00000034371.10	Tkfc	chr19	protein_coding	triokinase, FMN cyclase
known_NIR_9397	chr19	10574385	10574699	-	10574385	10574674	A5SS	ENSMUST00000237788.2	known	0.00	0	326	0	326	n	0.00	0	294	0	294	n	0.00	0	461	0	461	n	0.00	2	493	2	493	y	0.00	2	409	2	409	y	0.00	0	223	0	223	n	0.00	0	377	0	377	n	0.00	0	258	0	258	n	0.00	1	276	1	276	n	0.00	0	467	0	467	n	0.00	0	338	0	338	n	0.00	0	400	0	400	n	ENSMUSG00000034371.10	Tkfc	chr19	protein_coding	triokinase, FMN cyclase
known_NIR_9398	chr19	10581637	10582305	-	10581637	10582583	A5SS	ENSMUST00000236950.2	known	0.43	6	8	6	8	y	0.56	5	4	5	4	n	0.47	9	10	9	10	y	0.57	8	6	8	6	y	0.52	13	12	13	12	y	0.60	6	4	6	4	y	0.54	7	6	7	6	y	0.80	8	2	8	2	y	0.50	4	4	4	4	n	0.50	11	11	11	11	y	0.44	8	10	8	10	y	0.67	6	3	6	3	n	ENSMUSG00000034371.10	Tkfc	chr19	protein_coding	triokinase, FMN cyclase
known_NIR_9399	chr19	10581637	10582305	-	10581637	10582773	A5SS	ENSMUST00000237788.2	known	0.86	6	1	6	1	n	0.83	5	1	5	1	n	0.82	9	2	9	2	y	0.80	8	2	8	2	y	0.62	13	8	13	8	y	0.67	6	3	6	3	n	0.88	7	1	7	1	n	0.73	8	3	8	3	y	0.44	4	5	4	5	n	0.65	11	6	11	6	y	0.89	8	1	8	1	n	0.55	6	5	6	5	y	ENSMUSG00000034371.10	Tkfc	chr19	protein_coding	triokinase, FMN cyclase
known_NIR_9400	chr19	10581637	10582583	-	10581637	10582773	A5SS	ENSMUST00000237788.2	known	0.89	8	1	8	1	n	0.80	4	1	4	1	n	0.83	10	2	10	2	y	0.75	6	2	6	2	n	0.60	12	8	12	8	y	0.57	4	3	4	3	n	0.86	6	1	6	1	n	0.40	2	3	2	3	n	0.44	4	5	4	5	n	0.65	11	6	11	6	y	0.91	10	1	10	1	n	0.38	3	5	3	5	n	ENSMUSG00000034371.10	Tkfc	chr19	protein_coding	triokinase, FMN cyclase
known_NIR_9401	chr19	10585836	10588066	+	10585836	10587156	3pMXE	ENSMUST00000236722.2	known	0.99	104	1	104	1	n	0.96	75	3	75	3	y	0.92	212	18	212	18	y	1.00	151	0	151	0	n	0.97	168	5	168	5	y	0.96	122	5	122	5	y	0.98	163	4	163	4	y	0.94	101	7	101	7	y	0.97	99	3	99	3	y	0.98	166	4	166	4	y	0.98	86	2	86	2	y	0.99	169	1	169	1	n	ENSMUSG00000024740.11	Ddb1	chr19	protein_coding	damage specific DNA binding protein 1
known_NIR_9402	chr19	10585836;10587191	10587156;10588066	+	10585836	10588066	cassetteExon	ENSMUST00000025649.10	known	0.00	0.5	104	1;0	104	n	0.04	3.5	75	3;4	75	y	0.05	12.0	212	18;6	212	y	0.01	1.0	151	0;2	151	n	0.03	4.5	168	5;4	168	y	0.04	4.5	122	5;4	122	y	0.02	4.0	163	4;4	163	y	0.05	5.5	101	7;4	101	y	0.02	2.5	99	3;2	99	y	0.02	3.0	166	4;2	166	y	0.01	1.0	86	2;0	86	n	0.00	0.5	169	1;0	169	n	ENSMUSG00000024740.11	Ddb1	chr19	protein_coding	damage specific DNA binding protein 1
known_NIR_9403	chr19	10615544	10616399	+	10615544	10618990	A3SS	ENSMUST00000055115.9	known	0.21	6	23	6	23	y	0.36	8	14	8	14	y	0.50	9	9	9	9	y	0.19	7	29	7	29	y	0.38	18	29	18	29	y	0.18	2	9	2	9	y	0.29	14	34	14	34	y	0.34	11	21	11	21	y	0.23	7	24	7	24	y	0.23	16	53	16	53	y	0.48	13	14	13	14	y	0.25	11	33	11	33	y	ENSMUSG00000043789.9	Vwce	chr19	protein_coding	von Willebrand factor C and EGF domains
known_NIR_9404	chr19	10625872	10630414	+	10625872;10628012	10627925;10630414	ES	ENSMUST00000055115.9	known	0.00	0	39.5	0	41;38	n	0.03	1	28.0	1	27;29	n	0.00	0	19.5	0	21;18	n	0.00	0	42.0	0	45;39	n	0.00	0	59.5	0	58;61	n	0.17	3	15.0	3	14;16	y	0.00	0	48.5	0	45;52	n	0.00	0	25.5	0	25;26	n	0.00	0	27.0	0	28;26	n	0.02	1	60.0	1	53;67	n	0.00	0	34.0	0	38;30	n	0.09	4	43.0	4	42;44	y	ENSMUSG00000043789.9	Vwce	chr19	protein_coding	von Willebrand factor C and EGF domains
known_NIR_9405	chr19	10666260	10683574	+	10666343	10683574	A5SS	ENSMUST00000087951.7	known	0.18	3	14	3	14	y	0.13	2	13	2	13	y	0.06	2	33	2	33	y	0.18	2	9	2	9	y	0.14	3	19	3	19	y	0.00	0	16	0	16	n	0.14	4	24	4	24	y	0.00	0	16	0	16	n	0.17	2	10	2	10	y	0.16	4	21	4	21	y	0.15	2	11	2	11	y	0.13	2	13	2	13	y	ENSMUSG00000048832.10	Vps37c	chr19	protein_coding	vacuolar protein sorting 37C
known_NIR_9406	chr19	10666343	10683574	+	10666173	10683574	A5SS	ENSMUST00000237240.2	known	1.00	14	0	14	0	n	0.93	13	1	13	1	n	1.00	33	0	33	0	n	1.00	9	0	9	0	n	1.00	19	0	19	0	n	0.94	16	1	16	1	n	0.92	24	2	24	2	y	0.89	16	2	16	2	y	1.00	10	0	10	0	n	1.00	21	0	21	0	n	1.00	11	0	11	0	n	1.00	13	0	13	0	n	ENSMUSG00000048832.10	Vps37c	chr19	protein_coding	vacuolar protein sorting 37C
known_NIR_9407	chr19	10666343	10683574	+	10666347	10683574	A5SS	ENSMUST00000235927.2	known	0.88	14	2	14	2	y	1.00	13	0	13	0	n	0.97	33	1	33	1	n	0.69	9	4	9	4	y	1.00	19	0	19	0	n	0.89	16	2	16	2	y	1.00	24	0	24	0	n	0.89	16	2	16	2	y	0.83	10	2	10	2	y	0.95	21	1	21	1	n	0.85	11	2	11	2	y	0.81	13	3	13	3	y	ENSMUSG00000048832.10	Vps37c	chr19	protein_coding	vacuolar protein sorting 37C
known_NIR_9408	chr19	10683672;10687805	10687634;10688635	+	10683672	10688635	cassetteExon	ENSMUST00000237240.2	known	1.00	27.0	0	33;21	0	n	0.88	21.0	3	27;15	3	y	0.98	58.5	1	64;53	1	n	1.00	35.5	0	37;34	0	n	1.00	52.0	0	47;57	0	n	0.97	32.5	1	31;34	1	n	1.00	35.5	0	35;36	0	n	0.97	29.0	1	32;26	1	n	1.00	26.5	0	26;27	0	n	0.97	36.5	1	47;26	1	n	1.00	26.5	0	31;22	0	n	1.00	29.0	0	29;29	0	n	ENSMUSG00000048832.10	Vps37c	chr19	protein_coding	vacuolar protein sorting 37C
known_NIR_9409	chr19	10851850	10859016	-	10851850	10857544	5pMXE	ENSMUST00000133303.8	known	1.00	56	0	56	0	n	1.00	42	0	42	0	n	1.00	55	0	55	0	n	1.00	48	0	48	0	n	1.00	73	0	73	0	n	1.00	30	0	30	0	n	0.96	75	3	75	3	y	1.00	37	0	37	0	n	1.00	47	0	47	0	n	1.00	57	0	57	0	n	0.98	54	1	54	1	n	1.00	50	0	50	0	n	ENSMUSG00000034659.15	Tmem109	chr19	protein_coding	transmembrane protein 109
known_NIR_9410	chr19	10875257	10876290	+	10875257	10876347	A3SS	ENSMUST00000025642.14	known	0.07	12	162	12	162	y	0.07	10	130	10	130	y	0.08	19	227	19	227	y	0.07	15	186	15	186	y	0.08	21	228	21	228	y	0.06	5	85	5	85	y	0.05	8	167	8	167	y	0.07	6	80	6	80	y	0.05	10	181	10	181	y	0.06	14	233	14	233	y	0.08	17	185	17	185	y	0.08	18	205	18	205	y	ENSMUSG00000024735.14	Prpf19	chr19	protein_coding	pre-mRNA processing factor 19
known_NIR_9411	chr19	11025756	11027752	-	11025756	11033144	A5SS	ENSMUST00000238097.2	known	0.93	451	33	451	33	y	0.94	419	26	419	26	y	0.92	208	19	208	19	y	0.93	462	35	462	35	y	0.91	359	34	359	34	y	0.95	200	11	200	11	y	0.89	345	44	345	44	y	0.90	173	20	173	20	y	0.90	368	42	368	42	y	0.91	630	60	630	60	y	0.91	438	42	438	42	y	0.93	388	30	388	30	y	ENSMUSG00000075010.6	AW112010	chr19	lncRNA	expressed sequence AW112010
known_NIR_9412	chr19	11898927;11899358	11899285;11899831	+	11898927	11899831	cassetteExon	ENSMUST00000061618.9	known	0.36	4.5	8	5;4	8	y	0.65	5.5	3	7;4	3	y	0.11	2.0	17	4;0	17	n	0.19	3.0	13	4;2	13	y	0.36	8.0	14	10;6	14	y	0.33	3.5	7	3;4	7	y	0.31	8.0	18	9;7	18	y	0.80	4.0	1	5;3	1	n	0.13	1.5	10	2;1	10	n	0.33	8.0	16	10;6	16	y	0.17	1.0	5	1;1	5	n	0.17	4.0	19	1;7	19	n	ENSMUSG00000046139.9	Patl1	chr19	protein_coding	protein associated with topoisomerase II homolog 1 (yeast)
known_NIR_9413	chr19	12554534;12561486	12561287;12564199	+	12554534	12564199	cassetteExon	ENSMUST00000151307.8	known	1.00	1.0	0	2;0	0	n	1.00	5.0	0	3;7	0	n	1.00	3.0	0	4;2	0	n	1.00	0.5	0	1;0	0	n	1.00	1.5	0	2;1	0	n	-	-	-	-	-	-	0.75	6.0	2	6;6	2	y	1.00	2.5	0	2;3	0	n	1.00	1.5	0	2;1	0	n	1.00	0.5	0	1;0	0	n	1.00	1.0	0	1;1	0	n	1.00	1.5	0	1;2	0	n	ENSMUSG00000024691.14	Fam111a	chr19	protein_coding	family with sequence similarity 111, member A
known_NIR_9414	chr19	12577547	12590830	+	12577453	12590830	A5SS	ENSMUST00000181868.8	known	0.28	47	123	47	123	y	0.25	27	83	27	83	y	0.28	51	129	51	129	y	0.29	47	117	47	117	y	0.32	139	300	139	300	y	0.30	23	53	23	53	y	0.27	104	284	104	284	y	0.34	66	131	66	131	y	0.24	34	110	34	110	y	0.30	85	200	85	200	y	0.35	58	108	58	108	y	0.20	33	135	33	135	y	ENSMUSG00000071633.12	Gm4952	chr19	protein_coding	predicted gene 4952
known_NIR_9415	chr19	12610970	12611786	+	12610970	12617136	A3SS	ENSMUST00000044976.12	known	0.01	5	663	5	663	y	0.02	10	550	10	550	y	0.01	7	555	7	555	y	0.01	8	903	8	903	y	0.01	9	831	9	831	y	0.02	6	362	6	362	y	0.01	9	777	9	777	y	0.01	2	362	2	362	y	0.01	8	689	8	689	y	0.01	5	905	5	905	y	0.01	9	781	9	781	y	0.01	9	870	9	870	y	ENSMUSG00000063683.13	Glyat	chr19	protein_coding	glycine-N-acyltransferase
known_NIR_9416	chr19	12617047	12617136	+	12610970	12617136	A5SS	ENSMUST00000044976.12	known	0.02	14	663	14	663	y	0.02	11	550	11	550	y	0.02	12	555	12	555	y	0.02	15	903	15	903	y	0.02	21	831	21	831	y	0.03	12	362	12	362	y	0.02	19	777	19	777	y	0.05	18	362	18	362	y	0.02	13	689	13	689	y	0.02	23	905	23	905	y	0.03	21	781	21	781	y	0.02	14	870	14	870	y	ENSMUSG00000063683.13	Glyat	chr19	protein_coding	glycine-N-acyltransferase
known_NIR_9417	chr19	12617267	12623667	+	12617230	12623667	A5SS	ENSMUST00000044976.12	known	0.01	5	755	5	755	y	0.01	4	668	4	668	y	0.00	3	698	3	698	y	0.00	2	1015	2	1015	y	0.00	2	1113	2	1113	y	0.00	0	401	0	401	n	0.01	7	913	7	913	y	0.00	0	462	0	462	n	0.00	4	816	4	816	y	0.01	6	1194	6	1194	y	0.01	5	901	5	901	y	0.00	0	1050	0	1050	n	ENSMUSG00000063683.13	Glyat	chr19	protein_coding	glycine-N-acyltransferase
known_NIR_9418	chr19	12687050	12688376	+	12687050	12688346	A3SS	ENSMUST00000025598.10	known	0.09	17	163	17	163	y	0.05	5	97	5	97	y	0.00	0	2	0	2	n	0.05	16	287	16	287	y	0.08	16	181	16	181	y	0.00	0	15	0	15	n	0.05	8	160	8	160	y	0.00	0	18	0	18	n	0.07	25	322	25	322	y	0.07	24	344	24	344	y	0.11	38	315	38	315	y	0.06	33	486	33	486	y	ENSMUSG00000024694.10	Keg1	chr19	protein_coding	kidney expressed gene 1
known_NIR_9419	chr19	12687114	12688346	+	12687050	12688346	A5SS	ENSMUST00000025598.10	known	0.00	0	163	0	163	n	0.00	0	97	0	97	n	0.00	0	2	0	2	n	0.01	2	287	2	287	y	0.01	2	181	2	181	y	0.00	0	15	0	15	n	0.00	0	160	0	160	n	0.00	0	18	0	18	n	0.01	2	322	2	322	y	0.01	2	344	2	344	y	0.01	2	315	2	315	y	0.01	4	486	4	486	y	ENSMUSG00000024694.10	Keg1	chr19	protein_coding	kidney expressed gene 1
known_NIR_9420	chr19	12693433	12696273	+	12693433	12696144	A3SS	ENSMUST00000025598.10	known	0.01	2	320	2	320	y	0.01	1	196	1	196	n	0.00	0	10	0	10	n	0.00	0	450	0	450	n	0.00	1	285	1	285	n	0.00	0	10	0	10	n	0.00	0	282	0	282	n	0.00	0	36	0	36	n	0.00	2	471	2	471	y	0.01	4	621	4	621	y	0.00	3	598	3	598	y	0.01	7	820	7	820	y	ENSMUSG00000024694.10	Keg1	chr19	protein_coding	kidney expressed gene 1
known_NIR_9421	chr19	15935525	15936896	-	15933767	15936896	A3SS	ENSMUST00000047704.8	known	0.00	0	8	0	8	n	0.14	1	6	1	6	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.30	3	7	3	7	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.25	1	3	1	3	n	0.14	1	6	1	6	n	0.00	0	2	0	2	n	ENSMUSG00000041491.9	Cep78	chr19	protein_coding	centrosomal protein 78
known_NIR_9422	chr19	16293535	16294454	+	16293535	16309441	A3SS	ENSMUST00000025541.6	known	0.11	2	17	2	17	y	0.18	2	9	2	9	y	0.13	3	20	3	20	y	0.00	0	21	0	21	n	0.00	0	20	0	20	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.18	2	9	2	9	y	0.00	0	6	0	6	n	0.08	2	23	2	23	y	0.40	4	6	4	6	y	0.11	2	17	2	17	y	ENSMUSG00000024639.6	Gnaq	chr19	protein_coding	guanine nucleotide binding protein, alpha q polypeptide
known_NIR_9423	chr19	16612957	16613133	-	16598073	16613133	A3SS	ENSMUST00000068156.8	known	0.15	4	22	4	22	y	0.14	2	12	2	12	y	0.05	1	20	1	20	n	0.44	11	14	11	14	y	0.21	6	23	6	23	y	0.00	0	4	0	4	n	0.12	3	21	3	21	y	0.06	1	15	1	15	n	0.30	3	7	3	7	y	0.17	5	25	5	25	y	0.00	0	11	0	11	n	0.05	1	20	1	20	n	ENSMUSG00000046230.12	Vps13a	chr19	protein_coding	vacuolar protein sorting 13A
known_NIR_9424	chr19	17538193	17541146	-	17502678	17541146	A3SS	ENSMUST00000025618.16	known	0.60	12	8	12	8	y	0.87	13	2	13	2	y	0.64	58	33	58	33	y	0.53	10	9	10	9	y	0.57	21	16	21	16	y	0.76	22	7	22	7	y	0.81	35	8	35	8	y	0.67	16	8	16	8	y	0.64	9	5	9	5	y	0.39	9	14	9	14	y	0.58	11	8	11	8	y	0.50	10	10	10	10	y	ENSMUSG00000024713.17	Pcsk5	chr19	protein_coding	proprotein convertase subtilisin/kexin type 5
known_NIR_9425	chr19	17573142	17619857	-	17573142;17595118	17595015;17619857	ES	ENSMUST00000025618.16	known	0.26	3	8.5	3	10;7	y	0.45	5	6.0	5	5;7	y	0.15	8	45.5	8	40;51	y	0.23	4	13.5	4	14;13	y	0.24	6	19.5	6	14;25	y	0.33	7	14.5	7	8;21	y	0.09	2	20.5	2	24;17	y	0.00	0	14.0	0	12;16	n	0.47	4	4.5	4	6;3	y	0.33	5	10.0	5	11;9	y	0.14	1	6.0	1	8;4	n	0.42	7	9.5	7	8;11	y	ENSMUSG00000024713.17	Pcsk5	chr19	protein_coding	proprotein convertase subtilisin/kexin type 5
known_NIR_9426	chr19	18613506;18616763	18616282;18616882	+	18613506	18616882	cassetteExon	ENSMUST00000042392.14	known	0.18	7.0	31	1;13	31	n	0.22	7.5	27	1;14	27	n	0.40	11.5	17	0;23	17	n	0.21	14.5	54	5;24	54	y	0.37	17.5	30	4;31	30	y	0.38	7.5	12	1;14	12	n	0.37	17.5	30	4;31	30	y	0.32	12.0	25	5;19	25	y	0.45	17.5	21	0;35	21	n	0.16	11.5	62	2;21	62	y	0.20	12.5	51	3;22	51	y	0.16	11.5	59	6;17	59	y	ENSMUSG00000037847.15	Nmrk1	chr19	protein_coding	nicotinamide riboside kinase 1
known_NIR_9427	chr19	18622502;18623385	18623276;18628600	+	18622502	18628600	cassetteExon	ENSMUST00000042392.14	known	0.01	1.0	96	0;2	96	n	0.02	1.0	58	0;2	58	n	0.02	1.0	44	0;2	44	n	0.00	0.5	111	1;0	111	n	0.04	3.0	67	1;5	67	n	0.01	0.5	33	0;1	33	n	0.03	2.5	93	3;2	93	y	0.01	0.5	49	1;0	49	n	0.02	1.0	57	0;2	57	n	0.00	0.0	143	0;0	143	n	0.00	0.0	102	0;0	102	n	0.02	2.0	104	0;4	104	n	ENSMUSG00000037847.15	Nmrk1	chr19	protein_coding	nicotinamide riboside kinase 1
known_NIR_9428	chr19	18648799	18655052	+	18648566	18655052	A5SS	ENSMUST00000025632.11	known	0.03	1	32	1	32	n	0.04	1	26	1	26	n	0.09	5	49	5	49	y	0.00	0	49	0	49	n	0.03	2	59	2	59	y	0.04	1	25	1	25	n	0.11	5	40	5	40	y	0.10	3	27	3	27	y	0.03	1	38	1	38	n	0.12	7	51	7	51	y	0.05	2	40	2	40	y	0.06	3	44	3	44	y	ENSMUSG00000024726.11	Carnmt1	chr19	protein_coding	carnosine N-methyltransferase 1
known_NIR_9429	chr19	18648799	18655052	+	18648855	18655052	A5SS	ENSMUST00000235736.2	known	0.50	1	1	1	1	n	0.17	1	5	1	5	n	0.56	5	4	5	4	n	0.00	0	4	0	4	n	0.50	2	2	2	2	n	0.50	1	1	1	1	n	0.50	5	5	5	5	y	1.00	3	0	3	0	n	1.00	1	0	1	0	n	0.70	7	3	7	3	y	0.40	2	3	2	3	n	0.38	3	5	3	5	n	ENSMUSG00000024726.11	Carnmt1	chr19	protein_coding	carnosine N-methyltransferase 1
known_NIR_9430	chr19	18648855	18655052	+	18648566	18655052	A5SS	ENSMUST00000025632.11	known	0.03	1	32	1	32	n	0.16	5	26	5	26	y	0.08	4	49	4	49	y	0.08	4	49	4	49	y	0.03	2	59	2	59	y	0.04	1	25	1	25	n	0.11	5	40	5	40	y	0.00	0	27	0	27	n	0.00	0	38	0	38	n	0.06	3	51	3	51	y	0.07	3	40	3	40	y	0.10	5	44	5	44	y	ENSMUSG00000024726.11	Carnmt1	chr19	protein_coding	carnosine N-methyltransferase 1
known_NIR_9431	chr19	18691023	18694586	+	18691023	18694583	A3SS	ENSMUST00000062753.3	known	0.07	1	14	1	14	n	0.18	3	14	3	14	y	0.30	3	7	3	7	y	0.08	1	12	1	12	n	0.09	2	21	2	21	y	0.40	2	3	2	3	n	0.21	3	11	3	11	y	0.00	0	9	0	9	n	0.14	3	18	3	18	y	0.29	4	10	4	10	y	0.00	0	7	0	7	n	0.30	7	16	7	16	y	ENSMUSG00000047044.8	D030056L22Rik	chr19	protein_coding	RIKEN cDNA D030056L22 gene
known_NIR_9432	chr19	20530564	20537128	+	20530564	20533029	3pMXE	ENSMUST00000224807.2	known	0.40	2	3	2	3	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	n	0.83	10	2	10	2	y	1.00	2	0	2	0	n	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000053279.9	Aldh1a1	chr19	protein_coding	aldehyde dehydrogenase family 1, subfamily A1
known_NIR_9433	chr19	20530564	20579362	+	20530564	20533029	3pMXE	ENSMUST00000224807.2	known	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	11	0	11	0	n	1.00	9	0	9	0	n	0.86	6	1	6	1	n	0.91	21	2	21	2	y	1.00	3	0	3	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	6	0	6	0	n	-	-	-	-	-	-	ENSMUSG00000053279.9	Aldh1a1	chr19	protein_coding	aldehyde dehydrogenase family 1, subfamily A1
known_NIR_9434	chr19	20530564;20537228	20537128;20579362	+	20530564	20579362	cassetteExon	ENSMUST00000225337.3	known	1.00	1.0	0	2;0	0	n	1.00	0.5	0	1;0	0	n	1.00	0.5	0	1;0	0	n	0.00	0.0	11	0;0	11	n	0.00	0.0	9	0;0	9	n	0.33	3.0	6	3;3	6	y	0.43	16.0	21	10;22	21	y	0.40	2.0	3	2;2	3	n	-	-	-	-	-	-	1.00	2.0	0	1;3	0	n	0.08	0.5	6	0;1	6	n	1.00	1.0	0	1;1	0	n	ENSMUSG00000053279.9	Aldh1a1	chr19	protein_coding	aldehyde dehydrogenase family 1, subfamily A1
known_NIR_9435	chr19	21254453	21256989	+	21254453;21255122	21255019;21256989	ES	ENSMUST00000237651.2	known	0.08	7	82.0	7	74;90	y	0.03	2	61.5	2	53;70	y	0.04	5	124.0	5	130;118	y	0.03	3	83.0	3	84;82	y	0.10	12	108.5	12	98;119	y	0.02	1	64.0	1	62;66	n	0.03	4	139.0	4	139;139	y	0.03	2	58.0	2	62;54	y	0.03	3	93.5	3	79;108	y	0.10	13	123.5	13	93;154	y	0.04	4	85.0	4	78;92	y	0.06	7	112.5	7	117;108	y	ENSMUSG00000024750.12	Zfand5	chr19	protein_coding	zinc finger, AN1-type domain 5
known_NIR_9436	chr19	21576232	21629971	-	21576232;21596579	21596473;21629971	ES	ENSMUST00000038830.10	known	0.16	8	41.5	8	47;36	y	0.16	7	36.5	7	34;39	y	0.32	22	46.0	22	56;36	y	0.22	14	51.0	14	51;51	y	0.36	25	43.5	25	54;33	y	0.22	10	34.5	10	33;36	y	0.34	27	53.0	27	55;51	y	0.36	23	41.0	23	48;34	y	0.19	10	44.0	10	50;38	y	0.34	21	40.0	21	46;34	y	0.27	14	38.0	14	39;37	y	0.18	10	45.0	10	39;51	y	ENSMUSG00000035171.10	1110059E24Rik	chr19	protein_coding	RIKEN cDNA 1110059E24 gene
known_NIR_9437	chr19	21592809	21629971	-	21576232	21629971	A3SS	ENSMUST00000179553.2	known	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	22	0	22	n	0.00	0	14	0	14	n	0.00	0	25	0	25	n	0.00	0	10	0	10	n	0.00	0	27	0	27	n	0.00	0	23	0	23	n	0.00	0	10	0	10	n	0.09	2	21	2	21	y	0.00	0	14	0	14	n	0.00	0	10	0	10	n	ENSMUSG00000035171.10	1110059E24Rik	chr19	protein_coding	RIKEN cDNA 1110059E24 gene
known_NIR_9438	chr19	21592809	21629971	-	21596579	21629971	A3SS&ES	ENSMUST00000038830.10	known	0.00	0	36	0	36	n	0.00	0	39	0	39	n	0.00	0	36	0	36	n	0.00	0	51	0	51	n	0.00	0	33	0	33	n	0.00	0	36	0	36	n	0.00	0	51	0	51	n	0.00	0	34	0	34	n	0.00	0	38	0	38	n	0.06	2	34	2	34	y	0.00	0	37	0	37	n	0.00	0	51	0	51	n	ENSMUSG00000035171.10	1110059E24Rik	chr19	protein_coding	RIKEN cDNA 1110059E24 gene
known_NIR_9439	chr19	23039431;23040281	23040138;23040642	+	23039431	23040642	cassetteExon	ENSMUST00000237212.2	known	0.38	2.5	4	2;3	4	n	0.04	0.5	11	0;1	11	n	0.37	3.5	6	4;3	6	y	0.47	3.5	4	4;3	4	y	0.37	7.0	12	4;10	12	y	0.36	4.0	7	2;6	7	y	0.23	1.5	5	2;1	5	n	0.53	4.5	4	7;2	4	y	0.75	3.0	1	3;3	1	n	0.44	4.0	5	2;6	5	y	0.29	2.0	5	1;3	5	n	0.78	3.5	1	2;5	1	n	ENSMUSG00000118155.2	Gm50136	chr19	lncRNA	predicted gene, 50136
known_NIR_9440	chr19	23121336	23142047	+	23119623	23142047	A5SS	ENSMUST00000036884.3	known	0.00	0	134	0	134	n	0.00	0	79	0	79	n	0.00	0	156	0	156	n	0.00	0	139	0	139	n	0.01	3	249	3	249	y	0.00	0	95	0	95	n	0.01	2	205	2	205	y	0.00	0	111	0	111	n	0.00	0	112	0	112	n	0.00	0	123	0	123	n	0.00	0	53	0	53	n	0.00	0	172	0	172	n	ENSMUSG00000033863.3	Klf9	chr19	protein_coding	Kruppel-like factor 9
known_NIR_9441	chr19	23191534	23192006	-	23191534	23192009	A5SS	ENSMUST00000087556.7	known	0.47	17	19	17	19	y	0.50	21	21	21	21	y	0.35	18	34	18	34	y	0.29	14	35	14	35	y	0.34	22	42	22	42	y	0.19	4	17	4	17	y	0.36	20	36	20	36	y	0.47	22	25	22	25	y	0.64	21	12	21	12	y	0.24	12	38	12	38	y	0.73	22	8	22	8	y	0.57	23	17	23	17	y	ENSMUSG00000024943.10	Smc5	chr19	protein_coding	structural maintenance of chromosomes 5
known_NIR_9442	chr19	23192104	23195769	-	23192104	23192519	5pMXE	ENSMUST00000224441.2	known	0.54	13	11	13	11	y	0.52	17	16	17	16	y	0.33	17	34	17	34	y	0.39	7	11	7	11	y	0.49	27	28	27	28	y	0.14	3	18	3	18	y	0.50	22	22	22	22	y	0.22	8	28	8	28	y	0.33	5	10	5	10	y	0.35	12	22	12	22	y	0.33	11	22	11	22	y	0.36	16	29	16	29	y	ENSMUSG00000024943.10	Smc5	chr19	protein_coding	structural maintenance of chromosomes 5
known_NIR_9443	chr19	23192104	23195769	-	23192104;23192563	23192519;23195769	ES	ENSMUST00000087556.7	known	0.70	13	5.5	13	11;0	n	0.67	17	8.5	17	16;1	n	0.46	17	20.0	17	34;6	y	0.41	7	10.0	7	11;9	y	0.59	27	18.5	27	28;9	y	0.23	3	10.0	3	18;2	y	0.65	22	12.0	22	22;2	y	0.29	8	19.5	8	28;11	y	0.36	5	9.0	5	10;8	y	0.44	12	15.5	12	22;9	y	0.44	11	14.0	11	22;6	y	0.45	16	19.5	16	29;10	y	ENSMUSG00000024943.10	Smc5	chr19	protein_coding	structural maintenance of chromosomes 5
known_NIR_9444	chr19	24116196	24171073	-	24116196	24151319	5pMXE	ENSMUST00000233027.2	known	0.83	10	2	10	2	y	1.00	5	0	5	0	n	1.00	20	0	20	0	n	1.00	10	0	10	0	n	0.93	13	1	13	1	n	1.00	11	0	11	0	n	1.00	10	0	10	0	n	0.83	10	2	10	2	y	1.00	8	0	8	0	n	1.00	11	0	11	0	n	1.00	10	0	10	0	n	1.00	16	0	16	0	n	ENSMUSG00000024812.12	Tjp2	chr19	protein_coding	tight junction protein 2
known_NIR_9445	chr19	24116196	24202215	-	24116196;24171193	24171073;24202215	ES	ENSMUST00000232956.2	known	0.14	1	6.0	1	10;2	n	0.22	2	7.0	2	5;9	y	0.18	3	14.0	3	20;8	y	0.00	0	10.5	0	10;11	n	0.07	1	13.0	1	13;13	n	0.00	0	9.5	0	11;8	n	0.00	0	9.0	0	10;8	n	0.00	0	9.0	0	10;8	n	0.00	0	7.5	0	8;7	n	0.00	0	9.0	0	11;7	n	0.20	2	8.0	2	10;6	y	0.08	1	11.0	1	16;6	n	ENSMUSG00000024812.12	Tjp2	chr19	protein_coding	tight junction protein 2
known_NIR_9446	chr19	24244763	24249668	-	24244763	24249711	A5SS	ENSMUST00000081333.11	known	0.00	0	83	0	83	n	0.00	0	122	0	122	n	0.01	1	97	1	97	n	0.02	2	80	2	80	y	0.01	1	129	1	129	n	0.00	0	32	0	32	n	0.00	0	119	0	119	n	0.00	0	51	0	51	n	0.00	0	77	0	77	n	0.01	2	133	2	133	y	0.01	1	125	1	125	n	0.02	2	128	2	128	y	ENSMUSG00000059363.11	Fxn	chr19	protein_coding	frataxin
known_NIR_9447	chr19	24935354	24938681	-	24935354	24938748	A5SS	ENSMUST00000025815.10	known	0.29	7	17	7	17	y	0.42	8	11	8	11	y	0.19	4	17	4	17	y	0.12	2	14	2	14	y	0.11	3	24	3	24	y	0.27	3	8	3	8	y	0.24	5	16	5	16	y	0.38	5	8	5	8	y	0.12	2	15	2	15	y	0.13	3	20	3	20	y	0.07	1	14	1	14	n	0.20	4	16	4	16	y	ENSMUSG00000024878.10	Cbwd1	chr19	protein_coding	COBW domain containing 1
known_NIR_9448	chr19	25384397	25386450	+	25355894	25386450	A5SS	ENSMUST00000049400.15	known	1.00	2	0	2	0	n	-	-	-	-	-	-	0.94	16	1	16	1	n	0.78	7	2	7	2	n	1.00	6	0	6	0	n	1.00	5	0	5	0	n	0.67	2	1	2	1	n	1.00	7	0	7	0	n	1.00	7	0	7	0	n	1.00	9	0	9	0	n	1.00	5	0	5	0	n	0.60	6	4	6	4	y	ENSMUSG00000032702.17	Kank1	chr19	protein_coding	KN motif and ankyrin repeat domains 1
known_NIR_9449	chr19	26584943	26597084	+	26582633	26597084	A5SS	ENSMUST00000176769.9	known	0.00	0	11	0	11	n	0.50	5	5	5	5	y	0.11	1	8	1	8	n	0.30	9	21	9	21	y	0.06	2	29	2	29	y	0.38	6	10	6	10	y	0.17	3	15	3	15	y	0.17	3	15	3	15	y	0.18	2	9	2	9	y	0.21	8	30	8	30	y	0.08	1	12	1	12	n	0.04	2	46	2	46	y	ENSMUSG00000024921.18	Smarca2	chr19	protein_coding	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
known_NIR_9450	chr19	26725698	26729224	+	26698347	26729224	A5SS	ENSMUST00000176769.9	known	0.00	0	133	0	133	n	0.00	0	111	0	111	n	0.02	2	81	2	81	y	0.00	0	148	0	148	n	0.00	0	148	0	148	n	0.02	1	49	1	49	n	0.02	2	129	2	129	y	0.02	1	63	1	63	n	0.03	4	133	4	133	y	0.01	1	183	1	183	n	0.01	2	133	2	133	y	0.01	2	158	2	158	y	ENSMUSG00000024921.18	Smarca2	chr19	protein_coding	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
known_NIR_9451	chr19	26725698	26729224	+	26727347	26729224	A5SS&ES	ENSMUST00000207812.2	known	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.33	2	4	2	4	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.15	2	11	2	11	y	0.33	1	2	1	2	n	0.33	4	8	4	8	y	0.06	1	16	1	16	n	0.20	2	8	2	8	y	0.22	2	7	2	7	n	ENSMUSG00000024921.18	Smarca2	chr19	protein_coding	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
known_NIR_9452	chr19	26725944	26729224	+	26698347	26729224	A5SS	ENSMUST00000176769.9	known	0.00	0	133	0	133	n	0.00	0	111	0	111	n	0.00	0	81	0	81	n	0.01	1	148	1	148	n	0.00	0	148	0	148	n	0.00	0	49	0	49	n	0.02	3	129	3	129	y	0.00	0	63	0	63	n	0.00	0	133	0	133	n	0.01	1	183	1	183	n	0.01	1	133	1	133	n	0.00	0	158	0	158	n	ENSMUSG00000024921.18	Smarca2	chr19	protein_coding	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
known_NIR_9453	chr19	26725944	26729224	+	26725944;26727347	26727252;26729224	ES	ENSMUST00000207118.2	known	0.00	0	4.0	0	3;5	n	0.00	0	2.5	0	0;5	n	0.00	0	5.0	0	6;4	n	0.15	1	5.5	1	5;6	n	0.00	0	2.5	0	1;4	n	0.00	0	2.5	0	1;4	n	0.30	3	7.0	3	3;11	y	0.00	0	1.0	0	0;2	n	0.00	0	4.0	0	0;8	n	0.08	1	11.0	1	6;16	n	0.20	1	4.0	1	0;8	n	0.00	0	5.0	0	3;7	n	ENSMUSG00000024921.18	Smarca2	chr19	protein_coding	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
known_NIR_9454	chr19	26725944	26729224	+	26727347	26729224	A5SS&ES	ENSMUST00000207812.2	known	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.21	3	11	3	11	y	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.06	1	16	1	16	n	0.11	1	8	1	8	n	0.00	0	7	0	7	n	ENSMUSG00000024921.18	Smarca2	chr19	protein_coding	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
known_NIR_9455	chr19	26727347	26729224	+	26698347	26729224	A5SS	ENSMUST00000176769.9	known	0.04	5	133	5	133	y	0.04	5	111	5	111	y	0.05	4	81	4	81	y	0.04	6	148	6	148	y	0.03	4	148	4	148	y	0.08	4	49	4	49	y	0.08	11	129	11	129	y	0.03	2	63	2	63	y	0.06	8	133	8	133	y	0.08	16	183	16	183	y	0.06	8	133	8	133	y	0.04	7	158	7	158	y	ENSMUSG00000024921.18	Smarca2	chr19	protein_coding	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
known_NIR_9456	chr19	26729441	26748908	+	26729441;26737331	26737278;26748908	ES	ENSMUST00000099537.9	known	0.06	2	31.0	2	62;0	n	0.10	3	26.0	3	52;0	n	0.21	4	15.5	4	31;0	n	0.03	1	39.0	1	78;0	n	0.03	1	29.0	1	58;0	n	0.21	3	11.5	3	23;0	n	0.08	3	35.0	3	69;1	n	0.00	0	21.5	0	43;0	n	0.13	4	26.5	4	53;0	n	0.09	4	41.5	4	83;0	n	0.15	7	40.5	7	79;2	y	0.04	2	43.5	2	87;0	n	ENSMUSG00000024921.18	Smarca2	chr19	protein_coding	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
known_NIR_9457	chr19	26729441	26748908	+	26729441;26748443	26748338;26748908	ES	ENSMUST00000176769.9	known	0.03	2	77.5	2	44;111	y	0.03	3	101.5	3	57;146	y	0.06	4	61.0	4	41;81	y	0.01	1	112.5	1	61;164	n	0.01	1	117.0	1	73;161	n	0.06	3	46.5	3	27;66	y	0.02	3	117.5	3	65;170	y	0.00	0	50.5	0	30;71	n	0.04	4	95.5	4	44;147	y	0.03	4	116.5	4	59;174	y	0.06	7	104.0	7	47;161	y	0.02	2	114.5	2	58;171	y	ENSMUSG00000024921.18	Smarca2	chr19	protein_coding	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
known_NIR_9458	chr19	26729441;26737331	26737278;26748338	+	26729441	26748338	cassetteExon	ENSMUST00000176769.9	known	0.61	68.0	44	62;74	44	y	0.45	47.5	57	52;43	57	y	0.42	29.5	41	31;28	41	y	0.52	65.5	61	78;53	61	y	0.44	58.0	73	58;58	73	y	0.44	21.5	27	23;20	27	y	0.49	63.0	65	69;57	65	y	0.53	34.5	30	43;26	30	y	0.59	63.0	44	53;73	44	y	0.57	79.5	59	83;76	59	y	0.62	75.5	47	79;72	47	y	0.59	83.0	58	87;79	58	y	ENSMUSG00000024921.18	Smarca2	chr19	protein_coding	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
known_NIR_9459	chr19	26729441;26737331	26737278;26748908	+	26729441;26748443	26748338;26748908	MXE	ENSMUST00000176769.9	known	0.29	31.0	77.5	62;0	44;111	n	0.20	26.0	101.5	52;0	57;146	n	0.20	15.5	61.0	31;0	41;81	n	0.26	39.0	112.5	78;0	61;164	n	0.20	29.0	117.0	58;0	73;161	n	0.20	11.5	46.5	23;0	27;66	n	0.23	35.0	117.5	69;1	65;170	n	0.30	21.5	50.5	43;0	30;71	n	0.22	26.5	95.5	53;0	44;147	n	0.26	41.5	116.5	83;0	59;174	n	0.28	40.5	104.0	79;2	47;161	y	0.28	43.5	114.5	87;0	58;171	n	ENSMUSG00000024921.18	Smarca2	chr19	protein_coding	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
known_NIR_9460	chr19	26737331	26748908	+	26737331;26748443	26748338;26748908	ES	ENSMUST00000176030.8	known	0.00	0	92.5	0	74;111	n	0.00	0	94.5	0	43;146	n	0.00	0	54.5	0	28;81	n	0.00	0	108.5	0	53;164	n	0.00	0	109.5	0	58;161	n	0.00	0	43.0	0	20;66	n	0.01	1	113.5	1	57;170	n	0.00	0	48.5	0	26;71	n	0.00	0	110.0	0	73;147	n	0.00	0	125.0	0	76;174	n	0.02	2	116.5	2	72;161	y	0.00	0	125.0	0	79;171	n	ENSMUSG00000024921.18	Smarca2	chr19	protein_coding	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
known_NIR_9461	chr19	26737331	26748908	+	26748443	26748908	A5SS&ES	ENSMUST00000177116.8	known	0.00	0	111	0	111	n	0.00	0	146	0	146	n	0.00	0	81	0	81	n	0.00	0	164	0	164	n	0.00	0	161	0	161	n	0.00	0	66	0	66	n	0.01	1	170	1	170	n	0.00	0	71	0	71	n	0.00	0	147	0	147	n	0.00	0	174	0	174	n	0.01	2	161	2	161	y	0.00	0	171	0	171	n	ENSMUSG00000024921.18	Smarca2	chr19	protein_coding	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
known_NIR_9462	chr19	27397517	27398697	-	27397521	27398697	A3SS	ENSMUST00000076219.6	known	0.07	3	43	3	43	y	0.00	0	63	0	63	n	0.03	2	63	2	63	y	0.00	0	51	0	51	n	0.00	0	80	0	80	n	0.00	0	41	0	41	n	0.03	2	68	2	68	y	0.00	0	41	0	41	n	0.00	0	60	0	60	n	0.00	0	46	0	46	n	0.06	4	59	4	59	y	0.00	0	76	0	76	n	ENSMUSG00000041360.9	Pum3	chr19	protein_coding	pumilio RNA-binding family member 3
known_NIR_9463	chr19	27404528	27404796	-	27404528	27407192	A5SS	ENSMUST00000076219.6	known	0.20	4	16	4	16	y	0.00	0	7	0	7	n	0.00	0	22	0	22	n	0.00	0	12	0	12	n	0.04	1	23	1	23	n	0.00	0	5	0	5	n	0.00	0	21	0	21	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	ENSMUSG00000041360.9	Pum3	chr19	protein_coding	pumilio RNA-binding family member 3
known_NIR_9464	chr19	28906032	28906525	-	28906032	28915632	A5SS	ENSMUST00000175647.8	known	0.85	11	2	11	2	y	1.00	1	0	1	0	n	1.00	3	0	3	0	n	1.00	1	0	1	0	n	0.82	9	2	9	2	y	0.67	2	1	2	1	n	1.00	2	0	2	0	n	-	-	-	-	-	-	1.00	5	0	5	0	n	1.00	6	0	6	0	n	1.00	8	0	8	0	n	1.00	8	0	8	0	n	ENSMUSG00000064202.16	Spata6l	chr19	protein_coding	spermatogenesis associated 6 like
known_NIR_9465	chr19	28984487	28989289	+	28984487	28984973	3pMXE	ENSMUST00000224599.2	known	0.04	3	73	3	73	y	0.00	0	43	0	43	n	0.00	0	64	0	64	n	0.00	0	93	0	93	n	0.02	2	121	2	121	y	0.02	1	53	1	53	n	0.00	0	92	0	92	n	0.00	0	54	0	54	n	0.00	0	58	0	58	n	0.00	0	103	0	103	n	0.02	1	58	1	58	n	0.00	0	89	0	89	n	ENSMUSG00000024780.8	Cdc37l1	chr19	protein_coding	cell division cycle 37-like 1
known_NIR_9466	chr19	28984487	28989289	+	28984487;28985095	28984973;28989289	ES	ENSMUST00000225310.2	known	0.04	3	78.0	3	73;83	y	0.00	0	40.0	0	43;37	n	0.00	0	60.0	0	64;56	n	0.00	0	87.5	0	93;82	n	0.02	2	124.0	2	121;127	y	0.02	1	47.5	1	53;42	n	0.00	0	92.5	0	92;93	n	0.00	0	53.5	0	54;53	n	0.00	0	62.5	0	58;67	n	0.00	0	88.5	0	103;74	n	0.02	1	55.0	1	58;52	n	0.00	0	79.5	0	89;70	n	ENSMUSG00000024780.8	Cdc37l1	chr19	protein_coding	cell division cycle 37-like 1
known_NIR_9467	chr19	28989453	28993406	+	28989453	28990188	3pMXE	ENSMUST00000225310.2	known	0.62	40	24	40	24	y	0.65	37	20	37	20	y	0.75	58	19	58	19	y	0.68	42	20	42	20	y	0.61	64	41	64	41	y	0.70	26	11	26	11	y	0.65	49	26	49	26	y	0.62	43	26	43	26	y	0.62	39	24	39	24	y	0.65	56	30	56	30	y	0.68	50	24	50	24	y	0.68	51	24	51	24	y	ENSMUSG00000024780.8	Cdc37l1	chr19	protein_coding	cell division cycle 37-like 1
known_NIR_9468	chr19	28989453	28993406	+	28989453	29002204	A3SS	ENSMUST00000224511.2	known	0.93	40	3	40	3	y	1.00	37	0	37	0	n	0.94	58	4	58	4	y	0.95	42	2	42	2	y	0.93	64	5	64	5	y	0.93	26	2	26	2	y	0.98	49	1	49	1	n	1.00	43	0	43	0	n	0.95	39	2	39	2	y	1.00	56	0	56	0	n	0.93	50	4	50	4	y	1.00	51	0	51	0	n	ENSMUSG00000024780.8	Cdc37l1	chr19	protein_coding	cell division cycle 37-like 1
known_NIR_9469	chr19	28989453	28993801	+	28989453	28990188	3pMXE	ENSMUST00000225310.2	known	0.11	3	24	3	24	y	0.05	1	20	1	20	n	0.14	3	19	3	19	y	0.13	3	20	3	20	y	0.00	0	41	0	41	n	0.00	0	11	0	11	n	0.10	3	26	3	26	y	0.07	2	26	2	26	y	0.04	1	24	1	24	n	0.00	0	30	0	30	n	0.04	1	24	1	24	n	0.04	1	24	1	24	n	ENSMUSG00000024780.8	Cdc37l1	chr19	protein_coding	cell division cycle 37-like 1
known_NIR_9470	chr19	28989453	28993801	+	28989453	28993406	A3SS	ENSMUST00000050148.5	known	0.07	3	40	3	40	y	0.03	1	37	1	37	n	0.05	3	58	3	58	y	0.07	3	42	3	42	y	0.00	0	64	0	64	n	0.00	0	26	0	26	n	0.06	3	49	3	49	y	0.04	2	43	2	43	y	0.03	1	39	1	39	n	0.00	0	56	0	56	n	0.02	1	50	1	50	n	0.02	1	51	1	51	n	ENSMUSG00000024780.8	Cdc37l1	chr19	protein_coding	cell division cycle 37-like 1
known_NIR_9471	chr19	28989453	29002204	+	28989453	28990188	3pMXE	ENSMUST00000225310.2	known	0.11	3	24	3	24	y	0.00	0	20	0	20	n	0.17	4	19	4	19	y	0.09	2	20	2	20	y	0.11	5	41	5	41	y	0.15	2	11	2	11	y	0.04	1	26	1	26	n	0.00	0	26	0	26	n	0.08	2	24	2	24	y	0.00	0	30	0	30	n	0.14	4	24	4	24	y	0.00	0	24	0	24	n	ENSMUSG00000024780.8	Cdc37l1	chr19	protein_coding	cell division cycle 37-like 1
known_NIR_9472	chr19	29111903	29120547	+	29111903	29120542	A3SS	ENSMUST00000064393.6	known	0.01	4	488	4	488	y	0.02	7	417	7	417	y	0.01	7	1136	7	1136	y	0.00	1	469	1	469	n	0.01	9	886	9	886	y	0.00	3	733	3	733	y	0.00	2	760	2	760	y	0.00	2	575	2	575	y	0.01	4	434	4	434	y	0.00	3	643	3	643	y	0.00	2	603	2	603	y	0.01	7	716	7	716	y	ENSMUSG00000024785.8	Rcl1	chr19	protein_coding	RNA terminal phosphate cyclase-like 1
known_NIR_9473	chr19	29326405	29327760	-	29326405	29335717	A5SS	ENSMUST00000152936.8	known	0.92	22	2	22	2	y	0.85	29	5	29	5	y	1.00	27	0	27	0	n	1.00	17	0	17	0	n	0.97	36	1	36	1	n	0.86	12	2	12	2	y	0.97	37	1	37	1	n	1.00	18	0	18	0	n	0.93	14	1	14	1	n	0.96	23	1	23	1	n	1.00	18	0	18	0	n	1.00	29	0	29	0	n	ENSMUSG00000016495.13	Plgrkt	chr19	protein_coding	plasminogen receptor, C-terminal lysine transmembrane protein
known_NIR_9474	chr19	29328574	29335717	-	29326405	29335717	A3SS	ENSMUST00000152936.8	known	0.93	28	2	28	2	y	0.77	17	5	17	5	y	1.00	31	0	31	0	n	1.00	25	0	25	0	n	0.97	36	1	36	1	n	0.88	15	2	15	2	y	0.97	39	1	39	1	n	1.00	12	0	12	0	n	0.93	14	1	14	1	n	0.95	21	1	21	1	n	1.00	15	0	15	0	n	1.00	22	0	22	0	n	ENSMUSG00000016495.13	Plgrkt	chr19	protein_coding	plasminogen receptor, C-terminal lysine transmembrane protein
known_NIR_9475	chr19	29338327;29338539	29338442;29339197	-	29338327	29339197	cassetteExon	ENSMUST00000143467.8	known	0.11	1.5	12	3;0	12	n	0.33	2.0	4	2;2	4	n	0.33	2.5	5	4;1	5	n	0.20	1.5	6	2;1	6	n	0.48	7.5	8	11;4	8	y	0.05	0.5	9	1;0	9	n	0.19	5.0	21	7;3	21	y	0.41	3.5	5	3;4	5	y	0.20	1.5	6	1;2	6	n	0.22	2.5	9	2;3	9	y	0.10	1.5	13	3;0	13	n	0.18	2.0	9	4;0	9	n	ENSMUSG00000016495.13	Plgrkt	chr19	protein_coding	plasminogen receptor, C-terminal lysine transmembrane protein
known_NIR_9476	chr19	29700905	29720933	-	29700905;29712605	29712516;29720933	ES	ENSMUST00000175726.8	known	0.00	0	5.5	0	3;8	n	0.00	0	5.0	0	6;4	n	0.07	1	12.5	1	12;13	n	0.08	1	11.0	1	10;12	n	0.00	0	11.0	0	10;12	n	0.00	0	2.0	0	2;2	n	0.20	2	8.0	2	5;11	y	0.07	1	14.0	1	10;18	n	0.00	0	8.5	0	5;12	n	0.00	0	10.5	0	10;11	n	0.14	1	6.0	1	4;8	n	0.00	0	13.5	0	13;14	n	ENSMUSG00000046138.16	9930021J03Rik	chr19	protein_coding	RIKEN cDNA 9930021J03 gene
known_NIR_9477	chr19	29700905;29707359	29707232;29712516	-	29700905	29712516	cassetteExon	ENSMUST00000175726.8	known	0.25	1.0	3	2;0	3	n	0.00	0.0	6	0;0	6	n	0.20	3.0	12	4;2	12	y	0.17	2.0	10	3;1	10	n	0.26	3.5	10	2;5	10	y	0.20	0.5	2	0;1	2	n	0.23	1.5	5	0;3	5	n	0.29	4.0	10	2;6	10	y	0.17	1.0	5	0;2	5	n	0.09	1.0	10	0;2	10	n	0.11	0.5	4	1;0	4	n	0.19	3.0	13	4;2	13	y	ENSMUSG00000046138.16	9930021J03Rik	chr19	protein_coding	RIKEN cDNA 9930021J03 gene
known_NIR_9478	chr19	29732417	29782682	-	29732417;29763849	29763649;29782682	ES	ENSMUST00000175726.8	known	0.17	1	5.0	1	4;6	n	-	-	-	-	-	-	0.22	1	3.5	1	5;2	n	0.43	3	4.0	3	5;3	y	0.30	3	7.0	3	7;7	y	0.00	0	2.5	0	1;4	n	0.15	1	5.5	1	8;3	n	0.50	2	2.0	2	3;1	n	0.00	0	2.5	0	3;2	n	0.00	0	7.5	0	3;12	n	0.00	0	3.5	0	2;5	n	0.20	1	4.0	1	3;5	n	ENSMUSG00000046138.16	9930021J03Rik	chr19	protein_coding	RIKEN cDNA 9930021J03 gene
known_NIR_9479	chr19	31846259	31886192	+	31846259;31870598	31870455;31886192	ES	ENSMUST00000224564.2	known	0.12	6	44.5	6	29;60	y	0.14	6	36.0	6	31;41	y	0.22	8	28.0	8	27;29	y	0.13	12	78.0	12	67;89	y	0.16	25	135.0	25	123;147	y	0.11	4	33.5	4	30;37	y	0.09	7	74.0	7	67;81	y	0.18	11	48.5	11	48;49	y	0.15	9	51.0	9	48;54	y	0.15	18	102.0	18	85;119	y	0.16	12	62.0	12	58;66	y	0.17	22	110.0	22	105;115	y	ENSMUSG00000052595.9	A1cf	chr19	protein_coding	APOBEC1 complementation factor
known_NIR_9480	chr19	31910098	31912028	+	31910098	31912052	A3SS	ENSMUST00000224304.2	known	0.11	5	39	5	39	y	0.23	7	24	7	24	y	0.38	9	15	9	15	y	0.25	25	74	25	74	y	0.23	34	112	34	112	y	0.20	9	35	9	35	y	0.14	12	73	12	73	y	0.18	13	60	13	60	y	0.10	6	52	6	52	y	0.12	17	123	17	123	y	0.18	17	76	17	76	y	0.21	23	85	23	85	y	ENSMUSG00000052595.9	A1cf	chr19	protein_coding	APOBEC1 complementation factor
known_NIR_9481	chr19	32038805	32078950	-	32038802	32078950	A3SS	ENSMUST00000237104.2	known	0.56	5	4	5	4	n	-	-	-	-	-	-	0.71	5	2	5	2	n	0.77	10	3	10	3	y	0.61	11	7	11	7	y	0.58	7	5	7	5	y	0.25	2	6	2	6	n	0.62	5	3	5	3	n	0.38	3	5	3	5	n	0.91	10	1	10	1	n	1.00	2	0	2	0	n	0.67	2	1	2	1	n	ENSMUSG00000024887.11	Asah2	chr19	protein_coding	N-acylsphingosine amidohydrolase 2
known_NIR_9482	chr19	32038860	32078950	-	32038802	32078950	A3SS	ENSMUST00000237104.2	known	0.64	7	4	7	4	y	-	-	-	-	-	-	0.50	2	2	2	2	n	0.40	2	3	2	3	n	0.46	6	7	6	7	y	0.44	4	5	4	5	n	0.25	2	6	2	6	n	0.40	2	3	2	3	n	0.00	0	5	0	5	n	0.90	9	1	9	1	n	1.00	1	0	1	0	n	0.67	2	1	2	1	n	ENSMUSG00000024887.11	Asah2	chr19	protein_coding	N-acylsphingosine amidohydrolase 2
known_NIR_9483	chr19	32038860	32078950	-	32038805	32078950	A3SS	ENSMUST00000235213.2	known	0.58	7	5	7	5	y	-	-	-	-	-	-	0.29	2	5	2	5	n	0.17	2	10	2	10	y	0.35	6	11	6	11	y	0.36	4	7	4	7	y	0.50	2	2	2	2	n	0.29	2	5	2	5	n	0.00	0	3	0	3	n	0.47	9	10	9	10	y	0.33	1	2	1	2	n	0.50	2	2	2	2	n	ENSMUSG00000024887.11	Asah2	chr19	protein_coding	N-acylsphingosine amidohydrolase 2
known_NIR_9484	chr19	32120263;32134047	32133970;32136924	-	32120263	32136924	cassetteExon	ENSMUST00000099514.10	known	0.00	0.0	7	0;0	7	n	0.00	0.0	8	0;0	8	n	0.03	2.0	72	2;2	72	y	0.00	0.0	23	0;0	23	n	0.00	0.0	14	0;0	14	n	0.00	0.0	40	0;0	40	n	0.01	0.5	36	1;0	36	n	0.00	0.0	17	0;0	17	n	0.00	0.0	7	0;0	7	n	0.00	0.0	7	0;0	7	n	0.00	0.0	7	0;0	7	n	0.00	0.0	14	0;0	14	n	ENSMUSG00000040451.19	Sgms1	chr19	protein_coding	sphingomyelin synthase 1
known_NIR_9485	chr19	32137763	32173705	-	32137763	32188228	A5SS	ENSMUST00000151289.9	known	-	-	-	-	-	-	0.00	0	3	0	3	n	0.02	1	47	1	47	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.09	3	29	3	29	y	0.18	2	9	2	9	y	0.00	0	12	0	12	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000040451.19	Sgms1	chr19	protein_coding	sphingomyelin synthase 1
known_NIR_9486	chr19	32137763	32173705	-	32137763	32200909	A5SS	ENSMUST00000099514.10	known	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.03	1	32	1	32	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.33	3	6	3	6	n	0.06	2	32	2	32	y	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	14	0	14	n	0.00	0	18	0	18	n	ENSMUSG00000040451.19	Sgms1	chr19	protein_coding	sphingomyelin synthase 1
known_NIR_9487	chr19	32137763	32188228	-	32137763	32200909	A5SS	ENSMUST00000099514.10	known	0.00	0	6	0	6	n	0.30	3	7	3	7	y	0.59	47	32	47	32	y	0.00	0	10	0	10	n	0.18	3	14	3	14	y	0.83	29	6	29	6	y	0.22	9	32	9	32	y	0.63	12	7	12	7	y	0.10	1	9	1	9	n	0.07	1	14	1	14	n	0.00	0	14	0	14	n	0.05	1	18	1	18	n	ENSMUSG00000040451.19	Sgms1	chr19	protein_coding	sphingomyelin synthase 1
known_NIR_9488	chr19	32225436	32254286	-	32225436	32266941	A5SS	ENSMUST00000099514.10	known	0.00	0	14	0	14	n	0.00	0	2	0	2	n	0.00	0	18	0	18	n	0.17	2	10	2	10	y	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	26	0	26	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	ENSMUSG00000040451.19	Sgms1	chr19	protein_coding	sphingomyelin synthase 1
known_NIR_9489	chr19	32225436;32237497	32237376;32266941	-	32225436	32266941	cassetteExon	ENSMUST00000099514.10	known	0.12	2.0	14	4;0	14	n	0.33	1.0	2	1;1	2	n	0.14	3.0	18	3;3	18	y	0.13	1.5	10	3;0	10	n	0.04	0.5	11	0;1	11	n	0.08	0.5	6	1;0	6	n	0.04	1.0	26	2;0	26	n	0.04	0.5	11	0;1	11	n	0.00	0.0	13	0;0	13	n	0.18	2.0	9	3;1	9	n	0.00	0.0	8	0;0	8	n	0.00	0.0	10	0;0	10	n	ENSMUSG00000040451.19	Sgms1	chr19	protein_coding	sphingomyelin synthase 1
known_NIR_9490	chr19	32267031	32300437	-	32267031	32329345	A5SS	ENSMUST00000099514.10	known	0.22	2	7	2	7	n	0.00	0	7	0	7	n	0.07	1	14	1	14	n	0.18	2	9	2	9	y	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.21	5	19	5	19	y	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.25	1	3	1	3	n	0.10	1	9	1	9	n	ENSMUSG00000040451.19	Sgms1	chr19	protein_coding	sphingomyelin synthase 1
known_NIR_9491	chr19	32329423	32366952	-	32329423	32365620	5pMXE	ENSMUST00000099514.10	known	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.18	2	9	2	9	y	0.00	0	6	0	6	n	0.20	2	8	2	8	y	0.00	0	2	0	2	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.50	3	3	3	3	n	0.00	0	19	0	19	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	ENSMUSG00000040451.19	Sgms1	chr19	protein_coding	sphingomyelin synthase 1
known_NIR_9492	chr19	32597586	32611286	+	32573275	32611286	A5SS	ENSMUST00000235594.2	known	0.60	37	25	37	25	y	0.42	16	22	16	22	y	0.10	3	28	3	28	y	0.67	104	51	104	51	y	0.54	36	31	36	31	y	0.05	1	21	1	21	n	0.46	36	43	36	43	y	0.14	3	18	3	18	y	0.79	134	36	134	36	y	0.61	110	69	110	69	y	0.66	87	45	87	45	y	0.80	165	42	165	42	y	ENSMUSG00000024899.8	Papss2	chr19	protein_coding	3'-phosphoadenosine 5'-phosphosulfate synthase 2
known_NIR_9493	chr19	32618811;32623743	32623729;32629296	+	32618811	32629296	cassetteExon	ENSMUST00000235594.2	known	0.85	60.0	11	60;60	11	y	0.86	44.0	7	42;46	7	y	0.54	19.0	16	15;23	16	y	0.85	108.0	19	104;112	19	y	0.74	63.5	22	64;63	22	y	0.81	29.0	7	30;28	7	y	0.74	61.5	22	63;60	22	y	0.75	27.0	9	24;30	9	y	0.76	114.5	37	106;123	37	y	0.83	149.5	30	143;156	30	y	0.80	119.0	30	116;122	30	y	0.73	134.5	51	128;141	51	y	ENSMUSG00000024899.8	Papss2	chr19	protein_coding	3'-phosphoadenosine 5'-phosphosulfate synthase 2
known_NIR_9494	chr19	32664722	32672184	-	32664722	32673192	A5SS	ENSMUST00000235412.2	known	0.02	2	79	2	79	y	0.00	0	70	0	70	n	0.01	1	123	1	123	n	0.00	0	109	0	109	n	0.00	0	151	0	151	n	0.00	0	59	0	59	n	0.00	0	132	0	132	n	0.02	1	50	1	50	n	0.00	0	80	0	80	n	0.02	3	130	3	130	y	0.01	1	83	1	83	n	0.03	3	114	3	114	y	ENSMUSG00000013662.7	Atad1	chr19	protein_coding	ATPase family, AAA domain containing 1
known_NIR_9495	chr19	32680038	32689666	-	32680038	32684235	A5SS&ES	ENSMUST00000236985.2	known	0.00	0	48	0	48	n	0.00	0	43	0	43	n	0.00	0	131	0	131	n	0.00	0	110	0	110	n	0.00	0	134	0	134	n	0.06	3	49	3	49	y	0.00	0	89	0	89	n	0.00	0	57	0	57	n	0.02	2	82	2	82	y	0.00	0	107	0	107	n	0.00	0	78	0	78	n	0.00	0	103	0	103	n	ENSMUSG00000013662.7	Atad1	chr19	protein_coding	ATPase family, AAA domain containing 1
known_NIR_9496	chr19	32680038	32689666	-	32680038;32684409	32684235;32689666	ES	ENSMUST00000235412.2	known	0.00	0	39.0	0	48;30	n	0.00	0	34.0	0	43;25	n	0.00	0	103.0	0	131;75	n	0.00	0	87.0	0	110;64	n	0.00	0	99.5	0	134;65	n	0.06	3	43.5	3	49;38	y	0.00	0	69.5	0	89;50	n	0.00	0	46.5	0	57;36	n	0.04	2	54.5	2	82;27	y	0.00	0	79.0	0	107;51	n	0.00	0	54.0	0	78;30	n	0.00	0	75.0	0	103;47	n	ENSMUSG00000013662.7	Atad1	chr19	protein_coding	ATPase family, AAA domain containing 1
known_NIR_9497	chr19	3334833	3335310	+	3334817	3335310	A5SS	ENSMUST00000025745.10	known	0.00	0	94	0	94	n	0.00	0	117	0	117	n	0.01	1	105	1	105	n	0.01	1	121	1	121	n	0.01	2	145	2	145	y	0.00	0	61	0	61	n	0.00	0	145	0	145	n	0.05	3	63	3	63	y	0.04	4	105	4	105	y	0.03	5	157	5	157	y	0.00	0	133	0	133	n	0.00	0	117	0	117	n	ENSMUSG00000024829.13	Mrpl21	chr19	protein_coding	mitochondrial ribosomal protein L21
known_NIR_9498	chr19	3373374	3399189	+	3372698	3399189	A5SS	ENSMUST00000237938.2	known	0.97	62	2	62	2	y	1.00	67	0	67	0	n	1.00	113	0	113	0	n	1.00	219	1	219	1	n	1.00	196	0	196	0	n	1.00	74	0	74	0	n	1.00	160	0	160	0	n	0.99	97	1	97	1	n	1.00	81	0	81	0	n	0.98	196	3	196	3	y	1.00	84	0	84	0	n	1.00	137	0	137	0	n	ENSMUSG00000024900.6	Cpt1a	chr19	protein_coding	carnitine palmitoyltransferase 1a, liver
known_NIR_9499	chr19	3383815	3399189	+	3373374	3399189	A5SS	ENSMUST00000025835.6	known	0.03	2	62	2	62	y	0.00	0	67	0	67	n	0.02	2	113	2	113	y	0.00	0	219	0	219	n	0.00	0	196	0	196	n	0.00	0	74	0	74	n	0.00	0	160	0	160	n	0.00	0	97	0	97	n	0.00	0	81	0	81	n	0.02	4	196	4	196	y	0.01	1	84	1	84	n	0.02	3	137	3	137	y	ENSMUSG00000024900.6	Cpt1a	chr19	protein_coding	carnitine palmitoyltransferase 1a, liver
known_NIR_9500	chr19	34277582	34284525	+	34268144	34284525	A5SS	ENSMUST00000025691.13	known	0.02	1	40	1	40	n	0.03	1	37	1	37	n	0.08	7	81	7	81	y	0.07	4	55	4	55	y	0.10	10	94	10	94	y	0.07	4	57	4	57	y	0.08	6	70	6	70	y	0.15	12	70	12	70	y	0.11	4	34	4	34	y	0.08	4	48	4	48	y	0.08	4	44	4	44	y	0.14	9	55	9	55	y	ENSMUSG00000024778.14	Fas	chr19	protein_coding	Fas (TNF receptor superfamily member 6)
known_NIR_9501	chr19	34284678	34286436	+	34284678	34287412	A3SS	ENSMUST00000235709.2	known	1.00	12	0	12	0	n	1.00	18	0	18	0	n	0.95	41	2	41	2	y	1.00	21	0	21	0	n	0.93	43	3	43	3	y	1.00	22	0	22	0	n	0.97	29	1	29	1	n	0.78	28	8	28	8	y	0.88	15	2	15	2	y	1.00	17	0	17	0	n	1.00	20	0	20	0	n	1.00	18	0	18	0	n	ENSMUSG00000024778.14	Fas	chr19	protein_coding	Fas (TNF receptor superfamily member 6)
known_NIR_9502	chr19	34284678	34286436	+	34284678	34292579	A3SS	ENSMUST00000025691.13	known	0.24	12	39	12	39	y	0.26	18	51	18	51	y	0.28	41	105	41	105	y	0.25	21	64	21	64	y	0.27	43	116	43	116	y	0.25	22	67	22	67	y	0.26	29	83	29	83	y	0.22	28	97	28	97	y	0.25	15	45	15	45	y	0.17	17	83	17	83	y	0.36	20	36	20	36	y	0.24	18	56	18	56	y	ENSMUSG00000024778.14	Fas	chr19	protein_coding	Fas (TNF receptor superfamily member 6)
known_NIR_9503	chr19	34284678;34287569	34287412;34292579	+	34284678	34292579	cassetteExon	ENSMUST00000025691.13	known	0.00	0.0	39	0;0	39	n	0.02	1.0	51	0;2	51	n	0.02	2.0	105	2;2	105	y	0.00	0.0	64	0;0	64	n	0.02	2.5	116	3;2	116	y	0.01	0.5	67	0;1	67	n	0.01	1.0	83	1;1	83	n	0.04	4.0	97	8;0	97	n	0.02	1.0	45	2;0	45	n	0.00	0.0	83	0;0	83	n	0.00	0.0	36	0;0	36	n	0.00	0.0	56	0;0	56	n	ENSMUSG00000024778.14	Fas	chr19	protein_coding	Fas (TNF receptor superfamily member 6)
known_NIR_9504	chr19	34502246	34504766	-	34502242	34504766	A3SS	ENSMUST00000178114.2	known	0.93	132	10	132	10	y	0.87	61	9	61	9	y	0.92	115	10	115	10	y	0.90	143	16	143	16	y	0.91	246	23	246	23	y	0.93	81	6	81	6	y	0.90	170	19	170	19	y	0.93	138	11	138	11	y	0.95	100	5	100	5	y	0.89	211	27	211	27	y	0.92	126	11	126	11	y	0.92	185	16	185	16	y	ENSMUSG00000024781.17	Lipa	chr19	protein_coding	lysosomal acid lipase A
known_NIR_9505	chr19	34804773	34855086	-	34804773	34818157	A5SS&ES	ENSMUST00000036584.13	known	0.00	0	238	0	238	n	0.00	0	202	0	202	n	0.00	0	100	0	100	n	0.00	0	453	0	453	n	0.00	1	436	1	436	n	0.00	0	142	0	142	n	0.00	0	410	0	410	n	0.00	0	197	0	197	n	0.00	1	261	1	261	n	0.00	1	517	1	517	n	0.01	3	351	3	351	y	0.00	1	392	1	392	n	ENSMUSG00000033610.17	Pank1	chr19	protein_coding	pantothenate kinase 1
known_NIR_9506	chr19	34804773	34855086	-	34804773;34818509	34818157;34855086	ES	ENSMUST00000112460.3	known	0.00	0	207.5	0	238;177	n	0.00	0	174.5	0	202;147	n	0.00	0	76.5	0	100;53	n	0.00	0	441.0	0	453;429	n	0.00	1	394.5	1	436;353	n	0.00	0	126.0	0	142;110	n	0.00	0	406.0	0	410;402	n	0.00	0	184.0	0	197;171	n	0.00	1	273.5	1	261;286	n	0.00	1	486.0	1	517;455	n	0.01	3	323.0	3	351;295	y	0.00	1	366.5	1	392;341	n	ENSMUSG00000033610.17	Pank1	chr19	protein_coding	pantothenate kinase 1
known_NIR_9507	chr19	34804773	34855086	-	34818509	34855086	3pMXE	ENSMUST00000237577.2	known	0.00	0	177	0	177	n	0.00	0	147	0	147	n	0.00	0	53	0	53	n	0.00	0	429	0	429	n	0.00	1	353	1	353	n	0.00	0	110	0	110	n	0.00	0	402	0	402	n	0.00	0	171	0	171	n	0.00	1	286	1	286	n	0.00	1	455	1	455	n	0.01	3	295	3	295	y	0.00	1	341	1	341	n	ENSMUSG00000033610.17	Pank1	chr19	protein_coding	pantothenate kinase 1
known_NIR_9508	chr19	34818509	34855086	-	34818509	34855924	A5SS	ENSMUST00000036584.13	known	0.90	177	20	177	20	y	0.87	147	22	147	22	y	0.61	53	34	53	34	y	0.91	429	44	429	44	y	0.90	353	40	353	40	y	0.83	110	22	110	22	y	0.89	402	48	402	48	y	0.88	171	24	171	24	y	0.93	286	21	286	21	y	0.93	455	35	455	35	y	0.92	295	27	295	27	y	0.90	341	37	341	37	y	ENSMUSG00000033610.17	Pank1	chr19	protein_coding	pantothenate kinase 1
known_NIR_9509	chr19	3523815	3528278	-	3523866	3528278	A3SS	ENSMUST00000113997.9	known	0.16	9	46	9	46	y	0.22	9	32	9	32	y	0.21	15	58	15	58	y	0.25	17	50	17	50	y	0.22	29	105	29	105	y	0.27	15	40	15	40	y	0.20	17	67	17	67	y	0.21	14	52	14	52	y	0.20	8	33	8	33	y	0.13	8	55	8	55	y	0.19	10	43	10	43	y	0.18	14	62	14	62	y	ENSMUSG00000024908.16	Ppp6r3	chr19	protein_coding	protein phosphatase 6, regulatory subunit 3
known_NIR_9510	chr19	3523815	3534831	-	3523866	3534831	A3SS	ENSMUST00000025846.16	known	0.18	2	9	2	9	y	0.17	1	5	1	5	n	0.12	1	7	1	7	n	0.18	2	9	2	9	y	0.30	3	7	3	7	y	0.00	0	3	0	3	n	0.14	2	12	2	12	y	0.00	0	12	0	12	n	0.67	2	1	2	1	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	ENSMUSG00000024908.16	Ppp6r3	chr19	protein_coding	protein phosphatase 6, regulatory subunit 3
known_NIR_9511	chr19	3523815	3534831	-	3528364	3534831	A3SS&ES	ENSMUST00000113997.9	known	0.04	2	44	2	44	y	0.03	1	33	1	33	n	0.01	1	80	1	80	n	0.03	2	59	2	59	y	0.03	3	93	3	93	y	0.00	0	48	0	48	n	0.03	2	67	2	67	y	0.00	0	47	0	47	n	0.06	2	30	2	30	y	0.00	0	80	0	80	n	0.00	0	32	0	32	n	0.00	0	65	0	65	n	ENSMUSG00000024908.16	Ppp6r3	chr19	protein_coding	protein phosphatase 6, regulatory subunit 3
known_NIR_9512	chr19	3523815;3528364	3528278;3534831	-	3523815	3534831	cassetteExon	ENSMUST00000172362.3	known	0.93	26.5	2	9;44	2	y	0.95	21.0	1	9;33	1	n	0.98	47.5	1	15;80	1	n	0.95	38.0	2	17;59	2	y	0.95	61.0	3	29;93	3	y	1.00	31.5	0	15;48	0	n	0.95	42.0	2	17;67	2	y	1.00	30.5	0	14;47	0	n	0.90	19.0	2	8;30	2	y	1.00	44.0	0	8;80	0	n	1.00	21.0	0	10;32	0	n	1.00	39.5	0	14;65	0	n	ENSMUSG00000024908.16	Ppp6r3	chr19	protein_coding	protein phosphatase 6, regulatory subunit 3
known_NIR_9513	chr19	3523866	3534831	-	3528364	3534831	A3SS&ES	ENSMUST00000225624.2	known	0.17	9	44	9	44	y	0.13	5	33	5	33	y	0.08	7	80	7	80	y	0.13	9	59	9	59	y	0.07	7	93	7	93	y	0.06	3	48	3	48	y	0.15	12	67	12	67	y	0.20	12	47	12	47	y	0.03	1	30	1	30	n	0.09	8	80	8	80	y	0.18	7	32	7	32	y	0.03	2	65	2	65	y	ENSMUSG00000024908.16	Ppp6r3	chr19	protein_coding	protein phosphatase 6, regulatory subunit 3
known_NIR_9514	chr19	3523866;3528364	3528278;3534831	-	3523866	3534831	cassetteExon	ENSMUST00000025846.16	known	0.83	45.0	9	46;44	9	y	0.87	32.5	5	32;33	5	y	0.91	69.0	7	58;80	7	y	0.86	54.5	9	50;59	9	y	0.93	99.0	7	105;93	7	y	0.94	44.0	3	40;48	3	y	0.85	67.0	12	67;67	12	y	0.80	49.5	12	52;47	12	y	0.97	31.5	1	33;30	1	n	0.89	67.5	8	55;80	8	y	0.84	37.5	7	43;32	7	y	0.97	63.5	2	62;65	2	y	ENSMUSG00000024908.16	Ppp6r3	chr19	protein_coding	protein phosphatase 6, regulatory subunit 3
known_NIR_9515	chr19	3576929	3594108	-	3576934	3594108	A3SS	ENSMUST00000025846.16	known	0.00	0	26	0	26	n	0.04	1	22	1	22	n	0.03	2	58	2	58	y	0.15	7	41	7	41	y	0.04	3	65	3	65	y	0.07	2	28	2	28	y	0.11	6	48	6	48	y	0.11	2	17	2	17	y	0.17	3	15	3	15	y	0.03	1	32	1	32	n	0.05	1	20	1	20	n	0.06	3	51	3	51	y	ENSMUSG00000024908.16	Ppp6r3	chr19	protein_coding	protein phosphatase 6, regulatory subunit 3
known_NIR_9516	chr19	3576934	3625641	-	3576934;3594255	3594108;3625641	ES	ENSMUST00000025846.16	known	0.20	5	19.5	5	26;13	y	0.18	3	14.0	3	22;6	y	0.21	15	57.0	15	58;56	y	0.21	9	34.5	9	41;28	y	0.26	19	54.5	19	65;44	y	0.30	10	23.0	10	28;18	y	0.27	12	33.0	12	48;18	y	0.31	9	20.5	9	17;24	y	0.26	5	14.0	5	15;13	y	0.22	10	35.0	10	32;38	y	0.18	4	18.5	4	20;17	y	0.18	10	46.0	10	51;41	y	ENSMUSG00000024908.16	Ppp6r3	chr19	protein_coding	protein phosphatase 6, regulatory subunit 3
known_NIR_9517	chr19	3576934	3625641	-	3594255	3625641	A3SS&ES	ENSMUST00000225446.2	known	0.28	5	13	5	13	y	0.33	3	6	3	6	n	0.21	15	56	15	56	y	0.24	9	28	9	28	y	0.30	19	44	19	44	y	0.36	10	18	10	18	y	0.40	12	18	12	18	y	0.27	9	24	9	24	y	0.28	5	13	5	13	y	0.21	10	38	10	38	y	0.19	4	17	4	17	y	0.20	10	41	10	41	y	ENSMUSG00000024908.16	Ppp6r3	chr19	protein_coding	protein phosphatase 6, regulatory subunit 3
known_NIR_9518	chr19	36061360	36062466	+	36061218	36062466	A5SS	ENSMUST00000237251.2	known	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.10	2	19	2	19	y	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.11	1	8	1	8	n	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.06	1	16	1	16	n	ENSMUSG00000024800.9	Rpp30	chr19	protein_coding	ribonuclease P/MRP 30 subunit
known_NIR_9519	chr19	36077639	36078209	+	36077688	36078209	A5SS	ENSMUST00000025714.9	known	0.06	1	17	1	17	n	0.05	1	18	1	18	n	0.09	3	29	3	29	y	0.08	3	33	3	33	y	0.09	3	29	3	29	y	0.00	0	9	0	9	n	0.06	2	34	2	34	y	0.06	1	17	1	17	n	0.00	0	24	0	24	n	0.04	1	23	1	23	n	0.14	3	18	3	18	y	0.04	1	26	1	26	n	ENSMUSG00000024800.9	Rpp30	chr19	protein_coding	ribonuclease P/MRP 30 subunit
known_NIR_9520	chr19	36387309	36389356	+	36325969	36389356	A5SS	ENSMUST00000225920.2	known	0.13	2	13	2	13	y	0.33	1	2	1	2	n	0.53	9	8	9	8	y	0.20	2	8	2	8	y	0.30	6	14	6	14	y	0.50	3	3	3	3	n	0.64	9	5	9	5	y	0.17	1	5	1	5	n	0.57	4	3	4	3	n	0.30	3	7	3	7	y	0.44	4	5	4	5	n	0.24	4	13	4	13	y	ENSMUSG00000024805.17	Pcgf5	chr19	protein_coding	polycomb group ring finger 5
known_NIR_9521	chr19	36414610	36414706	+	36414610	36414703	A3SS	ENSMUST00000225920.2	known	0.00	0	31	0	31	n	0.00	0	23	0	23	n	0.07	5	63	5	63	y	0.00	0	28	0	28	n	0.04	2	45	2	45	y	0.03	1	37	1	37	n	0.17	9	43	9	43	y	0.15	3	17	3	17	y	0.05	1	19	1	19	n	0.07	4	57	4	57	y	0.00	0	32	0	32	n	0.07	3	40	3	40	y	ENSMUSG00000024805.17	Pcgf5	chr19	protein_coding	polycomb group ring finger 5
known_NIR_9522	chr19	36422477;36428023	36427964;36433021	+	36422477	36433021	cassetteExon	ENSMUST00000225920.2	known	0.40	10.5	16	9;12	16	y	0.50	9.0	9	7;11	9	y	0.40	24.0	36	25;23	36	y	0.39	11.5	18	11;12	18	y	0.29	12.0	29	12;12	29	y	0.26	5.0	14	6;4	14	y	0.52	17.5	16	18;17	16	y	0.41	7.5	11	8;7	11	y	0.42	10.0	14	12;8	14	y	0.47	20.5	23	15;26	23	y	0.53	17.0	15	16;18	15	y	0.43	15.0	20	11;19	20	y	ENSMUSG00000024805.17	Pcgf5	chr19	protein_coding	polycomb group ring finger 5
known_NIR_9523	chr19	36598892	36602623	-	36591881	36602623	A3SS	ENSMUST00000149601.8	known	1.00	25	0	25	0	n	0.86	19	3	19	3	y	-	-	-	-	-	-	0.96	25	1	25	1	n	1.00	10	0	10	0	n	0.50	1	1	1	1	n	0.85	50	9	50	9	y	1.00	3	0	3	0	n	0.84	36	7	36	7	y	0.88	78	11	78	11	y	0.87	13	2	13	2	y	0.78	32	9	32	9	y	ENSMUSG00000087579.8	Hectd2os	chr19	lncRNA	Hectd2, opposite strand
known_NIR_9524	chr19	3660209	3662198	-	3660238	3662198	A3SS	ENSMUST00000025856.17	known	0.04	2	54	2	54	y	0.02	1	40	1	40	n	0.03	3	116	3	116	y	0.02	1	43	1	43	n	0.01	1	110	1	110	n	0.00	0	98	0	98	n	0.00	0	104	0	104	n	0.00	0	92	0	92	n	0.08	2	23	2	23	y	0.00	0	58	0	58	n	0.02	1	45	1	45	n	0.02	1	60	1	60	n	ENSMUSG00000024913.17	Lrp5	chr19	protein_coding	low density lipoprotein receptor-related protein 5
known_NIR_9525	chr19	36602745	36603241	-	36602745	36623084	A5SS	ENSMUST00000149601.8	known	0.75	3	1	3	1	n	0.75	3	1	3	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.80	8	2	8	2	y	0.00	0	3	0	3	n	0.83	5	1	5	1	n	0.75	6	2	6	2	n	0.75	3	1	3	1	n	0.71	5	2	5	2	n	ENSMUSG00000087579.8	Hectd2os	chr19	lncRNA	Hectd2, opposite strand
known_NIR_9526	chr19	36602745	36603359	-	36602745	36603241	A5SS&ES	ENSMUST00000147754.8	known	0.62	5	3	5	3	n	0.50	3	3	3	3	n	-	-	-	-	-	-	0.95	18	1	18	1	n	1.00	2	0	2	0	n	-	-	-	-	-	-	0.65	15	8	15	8	y	-	-	-	-	-	-	0.79	19	5	19	5	y	0.83	30	6	30	6	y	0.70	7	3	7	3	y	0.64	9	5	9	5	y	ENSMUSG00000087579.8	Hectd2os	chr19	lncRNA	Hectd2, opposite strand
known_NIR_9527	chr19	36602745	36603359	-	36602745	36623084	A5SS	ENSMUST00000149601.8	known	0.83	5	1	5	1	n	0.75	3	1	3	1	n	-	-	-	-	-	-	0.95	18	1	18	1	n	0.50	2	2	2	2	n	-	-	-	-	-	-	0.88	15	2	15	2	y	0.00	0	3	0	3	n	0.95	19	1	19	1	n	0.94	30	2	30	2	y	0.88	7	1	7	1	n	0.82	9	2	9	2	y	ENSMUSG00000087579.8	Hectd2os	chr19	lncRNA	Hectd2, opposite strand
known_NIR_9528	chr19	36836576;36839765	36839486;36843352	+	36836576	36843352	cassetteExon	ENSMUST00000167724.2	known	1.00	20.0	0	20;20	0	n	1.00	18.5	0	19;18	0	n	0.98	63.5	1	70;57	1	n	1.00	45.0	0	56;34	0	n	0.97	33.5	1	39;28	1	n	0.97	32.0	1	37;27	1	n	0.95	38.5	2	41;36	2	y	0.97	31.5	1	30;33	1	n	1.00	24.0	0	22;26	0	n	0.94	31.0	2	38;24	2	y	1.00	25.0	0	26;24	0	n	0.98	42.0	1	47;37	1	n	ENSMUSG00000024811.12	Tnks2	chr19	protein_coding	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2
known_NIR_9529	chr19	36852773	36856635	+	36852773;36853773	36853585;36856635	ES	ENSMUST00000025729.12	known	0.09	3	29.5	3	28;31	y	0.08	2	24.5	2	26;23	y	0.22	18	63.0	18	68;58	y	0.16	7	35.5	7	41;30	y	0.10	6	56.0	6	63;49	y	0.14	5	30.5	5	28;33	y	0.09	4	41.0	4	52;30	y	0.06	2	34.0	2	33;35	y	0.06	2	30.0	2	30;30	y	0.16	11	58.5	11	49;68	y	0.07	2	28.0	2	36;20	y	0.07	5	62.5	5	62;63	y	ENSMUSG00000024811.12	Tnks2	chr19	protein_coding	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2
known_NIR_9530	chr19	37103788	37116531	-	37103788	37116462	A5SS	ENSMUST00000079754.11	known	1.00	7	0	7	0	n	1.00	3	0	3	0	n	0.67	10	5	10	5	y	0.71	5	2	5	2	n	0.60	9	6	9	6	y	0.50	2	2	2	2	n	0.67	8	4	8	4	y	0.40	4	6	4	6	y	0.78	7	2	7	2	n	0.80	12	3	12	3	y	1.00	11	0	11	0	n	0.67	8	4	8	4	y	ENSMUSG00000039652.17	Cpeb3	chr19	protein_coding	cytoplasmic polyadenylation element binding protein 3
known_NIR_9531	chr19	37197885	37198068	+	37197885	37198038	A3SS	ENSMUST00000024078.15	known	0.00	0	314	0	314	n	0.00	0	306	0	306	n	0.00	0	558	0	558	n	0.03	9	331	9	331	y	0.00	0	451	0	451	n	0.00	0	234	0	234	n	0.00	0	446	0	446	n	0.00	0	206	0	206	n	0.00	0	269	0	269	n	0.00	0	463	0	463	n	0.00	0	367	0	367	n	0.00	0	433	0	433	n	ENSMUSG00000023307.15	Marchf5	chr19	protein_coding	membrane associated ring-CH-type finger 5
known_NIR_9532	chr19	37265607	37267443	-	37265607	37268069	A5SS	ENSMUST00000134740.2	known	0.00	0	124	0	124	n	0.02	2	96	2	96	y	0.00	0	159	0	159	n	0.01	1	198	1	198	n	0.01	1	137	1	137	n	0.01	1	123	1	123	n	0.04	5	116	5	116	y	0.01	1	123	1	123	n	0.01	1	132	1	132	n	0.01	1	133	1	133	n	0.00	0	193	0	193	n	0.01	1	152	1	152	n	ENSMUSG00000056999.17	Ide	chr19	protein_coding	insulin degrading enzyme
known_NIR_9533	chr19	37425302	37425637	+	37423681	37425637	A5SS	ENSMUST00000025944.9	known	0.00	0	163	0	163	n	0.01	1	140	1	140	n	0.01	3	218	3	218	y	0.01	3	243	3	243	y	0.00	0	310	0	310	n	0.01	1	158	1	158	n	0.00	1	231	1	231	n	0.00	0	198	0	198	n	0.00	0	155	0	155	n	0.00	0	324	0	324	n	0.00	0	150	0	150	n	0.01	2	297	2	297	y	ENSMUSG00000024986.13	Hhex	chr19	protein_coding	hematopoietically expressed homeobox
known_NIR_9534	chr19	3758436	3764047	+	3758436	3764404	A3SS	ENSMUST00000039048.2	known	0.13	7	46	7	46	y	0.22	10	35	10	35	y	0.33	35	71	35	71	y	0.15	11	61	11	61	y	0.18	14	65	14	65	y	0.08	5	59	5	59	y	0.21	12	45	12	45	y	0.29	14	34	14	34	y	0.08	1	11	1	11	n	0.23	10	33	10	33	y	0.04	1	27	1	27	n	0.21	5	19	5	19	y	ENSMUSG00000035372.3	1810055G02Rik	chr19	protein_coding	RIKEN cDNA 1810055G02 gene
known_NIR_9535	chr19	3758436	3764047	+	3758436	3764407	A3SS	ENSMUST00000237320.2	known	0.24	7	22	7	22	y	0.50	10	10	10	10	y	0.65	35	19	35	19	y	0.31	11	24	11	24	y	0.35	14	26	14	26	y	0.15	5	28	5	28	y	0.43	12	16	12	16	y	0.48	14	15	14	15	y	0.14	1	6	1	6	n	0.53	10	9	10	9	y	0.17	1	5	1	5	n	0.33	5	10	5	10	y	ENSMUSG00000035372.3	1810055G02Rik	chr19	protein_coding	RIKEN cDNA 1810055G02 gene
known_NIR_9536	chr19	3758436	3764047	+	3758436	3765638	A3SS	ENSMUST00000235295.2	known	1.00	7	0	7	0	n	1.00	10	0	10	0	n	1.00	35	0	35	0	n	1.00	11	0	11	0	n	1.00	14	0	14	0	n	1.00	5	0	5	0	n	0.80	12	3	12	3	y	1.00	14	0	14	0	n	1.00	1	0	1	0	n	1.00	10	0	10	0	n	1.00	1	0	1	0	n	1.00	5	0	5	0	n	ENSMUSG00000035372.3	1810055G02Rik	chr19	protein_coding	RIKEN cDNA 1810055G02 gene
known_NIR_9537	chr19	3758436	3764404	+	3758436	3764407	A3SS	ENSMUST00000237320.2	known	0.68	46	22	46	22	y	0.78	35	10	35	10	y	0.79	71	19	71	19	y	0.72	61	24	61	24	y	0.71	65	26	65	26	y	0.68	59	28	59	28	y	0.74	45	16	45	16	y	0.69	34	15	34	15	y	0.65	11	6	11	6	y	0.79	33	9	33	9	y	0.84	27	5	27	5	y	0.66	19	10	19	10	y	ENSMUSG00000035372.3	1810055G02Rik	chr19	protein_coding	RIKEN cDNA 1810055G02 gene
known_NIR_9538	chr19	3758436	3765638	+	3758436;3764625	3764047;3765638	ES	ENSMUST00000237955.2	known	0.00	0	44.5	0	7;82	n	0.00	0	43.5	0	10;77	n	0.00	0	87.0	0	35;139	n	0.00	0	54.5	0	11;98	n	0.00	0	72.5	0	14;131	n	0.00	0	57.0	0	5;109	n	0.05	3	62.0	3	12;112	y	0.00	0	40.0	0	14;66	n	0.00	0	10.5	0	1;20	n	0.00	0	38.5	0	10;67	n	0.00	0	19.5	0	1;38	n	0.00	0	17.0	0	5;29	n	ENSMUSG00000035372.3	1810055G02Rik	chr19	protein_coding	RIKEN cDNA 1810055G02 gene
known_NIR_9539	chr19	3758436	3765638	+	3758436;3764625	3764404;3765638	ES	ENSMUST00000039048.2	known	0.00	0	64.0	0	46;82	n	0.00	0	56.0	0	35;77	n	0.00	0	105.0	0	71;139	n	0.00	0	79.5	0	61;98	n	0.00	0	98.0	0	65;131	n	0.00	0	84.0	0	59;109	n	0.04	3	78.5	3	45;112	y	0.00	0	50.0	0	34;66	n	0.00	0	15.5	0	11;20	n	0.00	0	50.0	0	33;67	n	0.00	0	32.5	0	27;38	n	0.00	0	24.0	0	19;29	n	ENSMUSG00000035372.3	1810055G02Rik	chr19	protein_coding	RIKEN cDNA 1810055G02 gene
known_NIR_9540	chr19	3758436	3765638	+	3758436;3764625	3764407;3765638	ES	ENSMUST00000237320.2	known	0.00	0	52.0	0	22;82	n	0.00	0	43.5	0	10;77	n	0.00	0	79.0	0	19;139	n	0.00	0	61.0	0	24;98	n	0.00	0	78.5	0	26;131	n	0.00	0	68.5	0	28;109	n	0.04	3	64.0	3	16;112	y	0.00	0	40.5	0	15;66	n	0.00	0	13.0	0	6;20	n	0.00	0	38.0	0	9;67	n	0.00	0	21.5	0	5;38	n	0.00	0	19.5	0	10;29	n	ENSMUSG00000035372.3	1810055G02Rik	chr19	protein_coding	RIKEN cDNA 1810055G02 gene
known_NIR_9541	chr19	3758436	3765638	+	3764625	3765638	A5SS&ES	ENSMUST00000235837.2	known	0.00	0	82	0	82	n	0.00	0	77	0	77	n	0.00	0	139	0	139	n	0.00	0	98	0	98	n	0.00	0	131	0	131	n	0.00	0	109	0	109	n	0.03	3	112	3	112	y	0.00	0	66	0	66	n	0.00	0	20	0	20	n	0.00	0	67	0	67	n	0.00	0	38	0	38	n	0.00	0	29	0	29	n	ENSMUSG00000035372.3	1810055G02Rik	chr19	protein_coding	RIKEN cDNA 1810055G02 gene
known_NIR_9542	chr19	3758508	3764404	+	3758436	3764404	A5SS	ENSMUST00000039048.2	known	0.00	0	46	0	46	n	0.00	0	35	0	35	n	0.03	2	71	2	71	y	0.00	0	61	0	61	n	0.00	0	65	0	65	n	0.00	0	59	0	59	n	0.00	0	45	0	45	n	0.00	0	34	0	34	n	0.00	0	11	0	11	n	0.00	0	33	0	33	n	0.00	0	27	0	27	n	0.00	0	19	0	19	n	ENSMUSG00000035372.3	1810055G02Rik	chr19	protein_coding	RIKEN cDNA 1810055G02 gene
known_NIR_9543	chr19	38113095	38113206	-	38113095	38113403	A5SS	ENSMUST00000025951.14	known	0.97	3993	123	3993	123	y	0.96	3736	166	3736	166	y	0.96	1293	50	1293	50	y	0.97	5208	139	5208	139	y	0.97	5431	152	5431	152	y	0.98	1091	20	1091	20	y	0.97	5098	150	5098	150	y	0.98	1692	39	1692	39	y	0.96	4180	157	4180	157	y	0.96	5967	264	5967	264	y	0.96	5255	212	5255	212	y	0.97	4790	163	4790	163	y	ENSMUSG00000024990.14	Rbp4	chr19	protein_coding	retinol binding protein 4, plasma
known_NIR_9544	chr19	38113095	38113415	-	38113095	38113206	5pMXE	ENSMUST00000112335.4	known	0.00	5	3993	5	3993	y	0.00	0	3736	0	3736	n	0.00	0	1293	0	1293	n	0.00	4	5208	4	5208	y	0.00	0	5431	0	5431	n	0.00	0	1091	0	1091	n	0.00	7	5098	7	5098	y	0.00	0	1692	0	1692	n	0.00	3	4180	3	4180	y	0.00	6	5967	6	5967	y	0.00	9	5255	9	5255	y	0.00	7	4790	7	4790	y	ENSMUSG00000024990.14	Rbp4	chr19	protein_coding	retinol binding protein 4, plasma
known_NIR_9545	chr19	38113095	38113415	-	38113095	38113403	A5SS	ENSMUST00000025951.14	known	0.04	5	123	5	123	y	0.00	0	166	0	166	n	0.00	0	50	0	50	n	0.03	4	139	4	139	y	0.00	0	152	0	152	n	0.00	0	20	0	20	n	0.04	7	150	7	150	y	0.00	0	39	0	39	n	0.02	3	157	3	157	y	0.02	6	264	6	264	y	0.04	9	212	9	212	y	0.04	7	163	7	163	y	ENSMUSG00000024990.14	Rbp4	chr19	protein_coding	retinol binding protein 4, plasma
known_NIR_9546	chr19	3818340	3836389	+	3818340	3832220	3pMXE	ENSMUST00000155618.2	known	0.50	4	4	4	4	n	0.12	1	7	1	7	n	0.83	20	4	20	4	y	0.32	6	13	6	13	y	0.52	12	11	12	11	y	0.33	4	8	4	8	y	0.73	8	3	8	3	y	0.55	6	5	6	5	y	0.30	3	7	3	7	y	0.39	9	14	9	14	y	0.75	3	1	3	1	n	0.78	7	2	7	2	n	ENSMUSG00000045098.20	Kmt5b	chr19	protein_coding	lysine methyltransferase 5B
known_NIR_9547	chr19	3818340	3843068	+	3818340	3832220	3pMXE	ENSMUST00000155618.2	known	0.20	1	4	1	4	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.08	1	11	1	11	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.18	3	14	3	14	y	0.75	3	1	3	1	n	0.00	0	2	0	2	n	ENSMUSG00000045098.20	Kmt5b	chr19	protein_coding	lysine methyltransferase 5B
known_NIR_9548	chr19	3818340	3843068	+	3818340;3836627	3836389;3843068	ES	ENSMUST00000052699.13	known	0.08	1	12.0	1	4;20	n	0.00	0	9.5	0	1;18	n	0.00	0	29.5	0	20;39	n	0.00	0	15.5	0	6;25	n	0.04	1	25.0	1	12;38	n	0.00	0	9.5	0	4;15	n	0.00	0	15.0	0	8;22	n	0.00	0	17.0	0	6;28	n	0.00	0	13.0	0	3;23	n	0.14	3	18.0	3	9;27	y	0.35	3	5.5	3	3;8	y	0.00	0	20.5	0	7;34	n	ENSMUSG00000045098.20	Kmt5b	chr19	protein_coding	lysine methyltransferase 5B
known_NIR_9549	chr19	3818340	3843068	+	3836627	3843068	A5SS&ES	ENSMUST00000176407.8	known	0.05	1	20	1	20	n	0.00	0	18	0	18	n	0.00	0	39	0	39	n	0.00	0	25	0	25	n	0.03	1	38	1	38	n	0.00	0	15	0	15	n	0.00	0	22	0	22	n	0.00	0	28	0	28	n	0.00	0	23	0	23	n	0.10	3	27	3	27	y	0.27	3	8	3	8	y	0.00	0	34	0	34	n	ENSMUSG00000045098.20	Kmt5b	chr19	protein_coding	lysine methyltransferase 5B
known_NIR_9550	chr19	3818340;3832279	3832220;3836389	+	3818340	3836389	cassetteExon	ENSMUST00000052699.13	known	0.50	4.0	4	4;4	4	y	0.83	5.0	1	7;3	1	n	0.26	7.0	20	4;10	20	y	0.59	8.5	6	13;4	6	y	0.44	9.5	12	11;8	12	y	0.64	7.0	4	8;6	4	y	0.27	3.0	8	3;3	8	y	0.40	4.0	6	5;3	6	y	0.57	4.0	3	7;1	3	n	0.53	10.0	9	14;6	9	y	0.45	2.5	3	1;4	3	n	0.30	3.0	7	2;4	7	y	ENSMUSG00000045098.20	Kmt5b	chr19	protein_coding	lysine methyltransferase 5B
known_NIR_9551	chr19	3832279;3832852	3832756;3836389	+	3832279	3836389	cassetteExon	ENSMUST00000113974.11	known	0.47	3.5	4	1;6	4	n	0.00	0.0	3	0;0	3	n	0.31	4.5	10	5;4	10	y	0.50	4.0	4	2;6	4	y	0.20	2.0	8	2;2	8	y	0.14	1.0	6	1;1	6	n	0.57	4.0	3	3;5	3	y	0.40	2.0	3	3;1	3	n	0.78	3.5	1	4;3	1	n	0.45	5.0	6	3;7	6	y	0.33	2.0	4	2;2	4	n	0.43	3.0	4	3;3	4	y	ENSMUSG00000045098.20	Kmt5b	chr19	protein_coding	lysine methyltransferase 5B
known_NIR_9552	chr19	3832852	3836389	+	3818340	3836389	A5SS	ENSMUST00000052699.13	known	0.60	6	4	6	4	y	0.00	0	1	0	1	n	0.17	4	20	4	20	y	0.50	6	6	6	6	y	0.14	2	12	2	12	y	0.20	1	4	1	4	n	0.38	5	8	5	8	y	0.14	1	6	1	6	n	0.50	3	3	3	3	n	0.44	7	9	7	9	y	0.40	2	3	2	3	n	0.30	3	7	3	7	y	ENSMUSG00000045098.20	Kmt5b	chr19	protein_coding	lysine methyltransferase 5B
known_NIR_9553	chr19	3843215	3852075	+	3843215	3846640	3pMXE	ENSMUST00000177355.2	known	0.15	3	17	3	17	y	0.07	1	14	1	14	n	0.05	3	53	3	53	y	0.12	2	15	2	15	y	0.06	2	33	2	33	y	0.07	1	13	1	13	n	0.14	5	31	5	31	y	0.17	4	19	4	19	y	0.16	3	16	3	16	y	0.16	5	26	5	26	y	0.12	2	14	2	14	y	0.18	5	23	5	23	y	ENSMUSG00000045098.20	Kmt5b	chr19	protein_coding	lysine methyltransferase 5B
known_NIR_9554	chr19	3843215	3852075	+	3843215;3846708	3846640;3852075	ES	ENSMUST00000052699.13	known	0.15	3	16.5	3	17;16	y	0.06	1	16.5	1	14;19	n	0.07	3	40.0	3	53;27	y	0.11	2	17.0	2	15;19	y	0.06	2	31.5	2	33;30	y	0.08	1	12.0	1	13;11	n	0.14	5	31.0	5	31;31	y	0.16	4	21.0	4	19;23	y	0.15	3	17.5	3	16;19	y	0.15	5	29.0	5	26;32	y	0.14	2	12.5	2	14;11	y	0.16	5	25.5	5	23;28	y	ENSMUSG00000045098.20	Kmt5b	chr19	protein_coding	lysine methyltransferase 5B
known_NIR_9555	chr19	3843215	3852075	+	3846708	3852075	5pMXE	ENSMUST00000236012.2	known	0.16	3	16	3	16	y	0.05	1	19	1	19	n	0.10	3	27	3	27	y	0.10	2	19	2	19	y	0.06	2	30	2	30	y	0.08	1	11	1	11	n	0.14	5	31	5	31	y	0.15	4	23	4	23	y	0.14	3	19	3	19	y	0.14	5	32	5	32	y	0.15	2	11	2	11	y	0.15	5	28	5	28	y	ENSMUSG00000045098.20	Kmt5b	chr19	protein_coding	lysine methyltransferase 5B
known_NIR_9556	chr19	3852897	3854448	+	3852897	3854395	A3SS	ENSMUST00000052699.13	known	0.00	0	37	0	37	n	0.04	1	22	1	22	n	0.00	0	47	0	47	n	0.00	0	36	0	36	n	0.00	0	50	0	50	n	0.00	0	28	0	28	n	0.00	0	32	0	32	n	0.00	0	28	0	28	n	0.00	0	25	0	25	n	0.00	0	37	0	37	n	0.07	2	28	2	28	y	0.00	0	47	0	47	n	ENSMUSG00000045098.20	Kmt5b	chr19	protein_coding	lysine methyltransferase 5B
known_NIR_9557	chr19	38884513	38887313	+	38884513	38896216	A3SS	ENSMUST00000235558.2	known	0.89	8	1	8	1	n	1.00	9	0	9	0	n	1.00	16	0	16	0	n	1.00	12	0	12	0	n	1.00	21	0	21	0	n	1.00	6	0	6	0	n	1.00	10	0	10	0	n	0.86	12	2	12	2	y	0.57	4	3	4	3	n	0.90	9	1	9	1	n	0.89	8	1	8	1	n	0.85	11	2	11	2	y	ENSMUSG00000048720.9	Tbc1d12	chr19	protein_coding	TBC1D12: TBC1 domain family, member 12
known_NIR_9558	chr19	38889859	38896216	+	38884513	38896216	A5SS	ENSMUST00000235558.2	known	0.92	12	1	12	1	n	1.00	7	0	7	0	n	1.00	26	0	26	0	n	1.00	9	0	9	0	n	1.00	13	0	13	0	n	1.00	5	0	5	0	n	1.00	17	0	17	0	n	0.82	9	2	9	2	y	0.73	8	3	8	3	y	0.95	18	1	18	1	n	0.83	5	1	5	1	n	0.91	21	2	21	2	y	ENSMUSG00000048720.9	Tbc1d12	chr19	protein_coding	TBC1D12: TBC1 domain family, member 12
known_NIR_9559	chr19	3914759	3921003	+	3914759	3934472	A3SS	ENSMUST00000072055.13	known	0.26	5	14	5	14	y	0.22	2	7	2	7	n	0.30	7	16	7	16	y	0.00	0	7	0	7	n	0.24	5	16	5	16	y	0.45	10	12	10	12	y	0.09	1	10	1	10	n	0.25	3	9	3	9	y	0.38	6	10	6	10	y	0.06	1	15	1	15	n	0.25	3	9	3	9	y	0.06	1	17	1	17	n	ENSMUSG00000024843.16	Chka	chr19	protein_coding	choline kinase alpha
known_NIR_9560	chr19	3914759	3925735	+	3914759	3921003	3pMXE	ENSMUST00000125411.8	known	0.55	6	5	6	5	y	0.85	11	2	11	2	y	0.86	44	7	44	7	y	1.00	5	0	5	0	n	0.83	24	5	24	5	y	0.44	8	10	8	10	y	0.91	10	1	10	1	n	0.79	11	3	11	3	y	0.71	15	6	15	6	y	0.92	11	1	11	1	n	0.57	4	3	4	3	n	0.93	13	1	13	1	n	ENSMUSG00000024843.16	Chka	chr19	protein_coding	choline kinase alpha
known_NIR_9561	chr19	3914759	3925735	+	3914759;3921062	3921003;3925735	ES	ENSMUST00000128694.8	known	0.71	6	2.5	6	5;0	n	0.92	11	1.0	11	2;0	n	0.93	44	3.5	44	7;0	n	1.00	5	0.0	5	0;0	n	0.91	24	2.5	24	5;0	n	0.55	8	6.5	8	10;3	y	0.95	10	0.5	10	1;0	n	0.81	11	2.5	11	3;2	y	0.83	15	3.0	15	6;0	n	0.92	11	1.0	11	1;1	n	0.73	4	1.5	4	3;0	n	0.96	13	0.5	13	1;0	n	ENSMUSG00000024843.16	Chka	chr19	protein_coding	choline kinase alpha
known_NIR_9562	chr19	3914759	3934472	+	3914759	3925735	3pMXE	ENSMUST00000124219.2	known	0.70	14	6	14	6	y	0.39	7	11	7	11	y	0.27	16	44	16	44	y	0.58	7	5	7	5	y	0.40	16	24	16	24	y	0.60	12	8	12	8	y	0.50	10	10	10	10	y	0.45	9	11	9	11	y	0.40	10	15	10	15	y	0.58	15	11	15	11	y	0.69	9	4	9	4	y	0.57	17	13	17	13	y	ENSMUSG00000024843.16	Chka	chr19	protein_coding	choline kinase alpha
known_NIR_9563	chr19	3914759;3925788	3925735;3934472	+	3914759	3934472	cassetteExon	ENSMUST00000072055.13	known	0.53	15.5	14	6;25	14	y	0.72	18.0	7	11;25	7	y	0.79	61.0	16	44;78	16	y	0.65	13.0	7	5;21	7	y	0.71	38.5	16	24;53	16	y	0.68	26.0	12	8;44	12	y	0.71	25.0	10	10;40	10	y	0.72	23.0	9	11;35	9	y	0.71	24.5	10	15;34	10	y	0.51	15.5	15	11;20	15	y	0.55	11.0	9	4;18	9	y	0.60	26.0	17	13;39	17	y	ENSMUSG00000024843.16	Chka	chr19	protein_coding	choline kinase alpha
known_NIR_9564	chr19	3924798	3925735	+	3914759	3925735	A5SS	ENSMUST00000124219.2	known	0.14	1	6	1	6	n	0.15	2	11	2	11	y	0.08	4	44	4	44	y	0.00	0	5	0	5	n	0.00	0	24	0	24	n	0.20	2	8	2	8	y	0.23	3	10	3	10	y	0.00	0	11	0	11	n	0.25	5	15	5	15	y	0.08	1	11	1	11	n	0.33	2	4	2	4	n	0.00	0	13	0	13	n	ENSMUSG00000024843.16	Chka	chr19	protein_coding	choline kinase alpha
known_NIR_9565	chr19	3925471	3925735	+	3914759	3925735	A5SS	ENSMUST00000124219.2	known	0.50	6	6	6	6	y	0.35	6	11	6	11	y	0.20	11	44	11	44	y	0.00	0	5	0	5	n	0.31	11	24	11	24	y	0.33	4	8	4	8	y	0.29	4	10	4	10	y	0.27	4	11	4	11	y	0.17	3	15	3	15	y	0.42	8	11	8	11	y	0.56	5	4	5	4	n	0.32	6	13	6	13	y	ENSMUSG00000024843.16	Chka	chr19	protein_coding	choline kinase alpha
known_NIR_9566	chr19	3925471	3925735	+	3924798	3925735	A5SS	ENSMUST00000153343.2	known	0.86	6	1	6	1	n	0.75	6	2	6	2	n	0.73	11	4	11	4	y	-	-	-	-	-	-	1.00	11	0	11	0	n	0.67	4	2	4	2	n	0.57	4	3	4	3	n	1.00	4	0	4	0	n	0.38	3	5	3	5	n	0.89	8	1	8	1	n	0.71	5	2	5	2	n	1.00	6	0	6	0	n	ENSMUSG00000024843.16	Chka	chr19	protein_coding	choline kinase alpha
known_NIR_9567	chr19	3925788;3932120	3931998;3934472	+	3925788	3934472	cassetteExon	ENSMUST00000128694.8	known	0.17	5.0	25	4;6	25	y	0.09	2.5	25	3;2	25	y	0.10	9.0	78	7;11	78	y	0.05	1.0	21	1;1	21	n	0.19	12.5	53	11;14	53	y	0.12	6.0	44	5;7	44	y	0.15	7.0	40	6;8	40	y	0.15	6.0	35	6;6	35	y	0.07	2.5	34	1;4	34	n	0.17	4.0	20	3;5	20	y	0.29	7.5	18	9;6	18	y	0.10	4.5	39	6;3	39	y	ENSMUSG00000024843.16	Chka	chr19	protein_coding	choline kinase alpha
known_NIR_9568	chr19	3948638	3948980	-	3948638	3948718	5pMXE	ENSMUST00000126643.3	known	0.00	0	139	0	139	n	0.00	0	138	0	138	n	0.00	0	77	0	77	n	0.00	0	100	0	100	n	0.00	0	151	0	151	n	0.00	0	63	0	63	n	0.00	0	148	0	148	n	0.00	0	49	0	49	n	0.00	0	75	0	75	n	0.00	0	165	0	165	n	0.00	0	121	0	121	n	0.02	2	86	2	86	y	ENSMUSG00000001750.17	Tcirg1	chr19	protein_coding	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3
known_NIR_9569	chr19	3948638	3948980	-	3948638;3948875	3948718;3948980	ES	ENSMUST00000145791.8	known	0.00	0	135.5	0	139;132	n	0.00	0	120.5	0	138;103	n	0.00	0	91.5	0	77;106	n	0.00	0	102.5	0	100;105	n	0.00	0	139.0	0	151;127	n	0.00	0	57.0	0	63;51	n	0.00	0	122.5	0	148;97	n	0.00	0	55.0	0	49;61	n	0.00	0	75.5	0	75;76	n	0.00	0	150.5	0	165;136	n	0.00	0	101.5	0	121;82	n	0.02	2	87.0	2	86;88	y	ENSMUSG00000001750.17	Tcirg1	chr19	protein_coding	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3
known_NIR_9570	chr19	3948638	3948980	-	3948875	3948980	A3SS	ENSMUST00000131327.8	known	0.00	0	132	0	132	n	0.00	0	103	0	103	n	0.00	0	106	0	106	n	0.00	0	105	0	105	n	0.00	0	127	0	127	n	0.00	0	51	0	51	n	0.00	0	97	0	97	n	0.00	0	61	0	61	n	0.00	0	76	0	76	n	0.00	0	136	0	136	n	0.00	0	82	0	82	n	0.02	2	88	2	88	y	ENSMUSG00000001750.17	Tcirg1	chr19	protein_coding	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3
known_NIR_9571	chr19	3954295	3954614	-	3954295	3954585	A5SS	ENSMUST00000145791.8	known	0.03	3	94	3	94	y	0.00	0	90	0	90	n	0.02	2	80	2	80	y	0.00	0	77	0	77	n	0.02	2	114	2	114	y	0.00	0	39	0	39	n	0.00	0	83	0	83	n	0.00	0	41	0	41	n	0.04	3	75	3	75	y	0.01	1	80	1	80	n	0.03	2	69	2	69	y	0.06	5	83	5	83	y	ENSMUSG00000001750.17	Tcirg1	chr19	protein_coding	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3
known_NIR_9572	chr19	3954705	3957019	-	3954705	3956524	5pMXE	ENSMUST00000126070.9	known	0.94	51	3	51	3	y	0.88	43	6	43	6	y	0.95	60	3	60	3	y	0.90	43	5	43	5	y	0.90	64	7	64	7	y	0.96	24	1	24	1	n	0.93	39	3	39	3	y	1.00	22	0	22	0	n	0.93	40	3	40	3	y	0.85	53	9	53	9	y	0.89	34	4	34	4	y	0.87	27	4	27	4	y	ENSMUSG00000001750.17	Tcirg1	chr19	protein_coding	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3
known_NIR_9573	chr19	3961597	3961689	-	3961616	3961689	A3SS	ENSMUST00000236801.2	known	0.00	0	457	0	457	n	0.01	3	432	3	432	y	0.01	2	305	2	305	y	0.00	1	483	1	483	n	0.01	3	474	3	474	y	0.00	0	233	0	233	n	0.01	3	513	3	513	y	0.01	2	233	2	233	y	0.00	2	413	2	413	y	0.00	0	613	0	613	n	0.00	0	483	0	483	n	0.01	3	555	3	555	y	ENSMUSG00000059734.8	Ndufs8	chr19	protein_coding	NADH:ubiquinone oxidoreductase core subunit S8
known_NIR_9574	chr19	3961746	3962467	-	3961746	3962203	A5SS	ENSMUST00000236801.2	known	0.93	28	2	28	2	y	0.96	25	1	25	1	n	0.94	15	1	15	1	n	0.97	30	1	30	1	n	0.95	37	2	37	2	y	0.78	7	2	7	2	n	0.97	33	1	33	1	n	0.91	10	1	10	1	n	0.92	33	3	33	3	y	0.87	33	5	33	5	y	1.00	34	0	34	0	n	1.00	35	0	35	0	n	ENSMUSG00000059734.8	Ndufs8	chr19	protein_coding	NADH:ubiquinone oxidoreductase core subunit S8
known_NIR_9575	chr19	3961746	3962470	-	3961746	3962467	A5SS	ENSMUST00000075092.8	known	0.12	4	28	4	28	y	0.07	2	25	2	25	y	0.12	2	15	2	15	y	0.03	1	30	1	30	n	0.05	2	37	2	37	y	0.00	0	7	0	7	n	0.13	5	33	5	33	y	0.00	0	10	0	10	n	0.11	4	33	4	33	y	0.08	3	33	3	33	y	0.08	3	34	3	34	y	0.00	0	35	0	35	n	ENSMUSG00000059734.8	Ndufs8	chr19	protein_coding	NADH:ubiquinone oxidoreductase core subunit S8
known_NIR_9576	chr19	3961746	3962470	-	3961746	3962710	A5SS	ENSMUST00000237341.2	known	0.02	4	257	4	257	y	0.01	2	264	2	264	y	0.01	2	183	2	183	y	0.00	1	298	1	298	n	0.01	2	289	2	289	y	0.00	0	140	0	140	n	0.02	5	285	5	285	y	0.00	0	151	0	151	n	0.02	4	243	4	243	y	0.01	3	361	3	361	y	0.01	3	294	3	294	y	0.00	0	325	0	325	n	ENSMUSG00000059734.8	Ndufs8	chr19	protein_coding	NADH:ubiquinone oxidoreductase core subunit S8
known_NIR_9577	chr19	3961746	3962710	-	3961746	3962203	5pMXE	ENSMUST00000236801.2	known	0.99	257	2	257	2	y	1.00	264	1	264	1	n	0.99	183	1	183	1	n	1.00	298	1	298	1	n	0.99	289	2	289	2	y	0.99	140	2	140	2	y	1.00	285	1	285	1	n	0.99	151	1	151	1	n	0.99	243	3	243	3	y	0.99	361	5	361	5	y	1.00	294	0	294	0	n	1.00	325	0	325	0	n	ENSMUSG00000059734.8	Ndufs8	chr19	protein_coding	NADH:ubiquinone oxidoreductase core subunit S8
known_NIR_9578	chr19	3961746	3962710	-	3961746	3962467	A5SS	ENSMUST00000075092.8	known	0.90	257	28	257	28	y	0.91	264	25	264	25	y	0.92	183	15	183	15	y	0.91	298	30	298	30	y	0.89	289	37	289	37	y	0.95	140	7	140	7	y	0.90	285	33	285	33	y	0.94	151	10	151	10	y	0.88	243	33	243	33	y	0.92	361	33	361	33	y	0.90	294	34	294	34	y	0.90	325	35	325	35	y	ENSMUSG00000059734.8	Ndufs8	chr19	protein_coding	NADH:ubiquinone oxidoreductase core subunit S8
known_NIR_9579	chr19	39792303	39795610	-	39792374	39795610	A3SS	ENSMUST00000160476.9	known	0.40	2	3	2	3	n	1.00	3	0	3	0	n	1.00	1	0	1	0	n	0.27	4	11	4	11	y	1.00	2	0	2	0	n	-	-	-	-	-	-	1.00	3	0	3	0	n	-	-	-	-	-	-	0.10	1	9	1	9	n	0.50	2	2	2	2	n	0.44	4	5	4	5	n	0.20	1	4	1	4	n	ENSMUSG00000025004.17	Cyp2c40	chr19	protein_coding	cytochrome P450, family 2, subfamily c, polypeptide 40
known_NIR_9580	chr19	3986422	3991885	+	3986422	3991520	3pMXE	ENSMUST00000237112.2	known	0.00	0	95	0	95	n	0.03	2	56	2	56	y	0.05	4	80	4	80	y	0.01	1	74	1	74	n	0.00	0	91	0	91	n	0.02	1	64	1	64	n	0.00	0	63	0	63	n	0.03	1	31	1	31	n	0.00	0	47	0	47	n	0.00	0	67	0	67	n	0.00	0	46	0	46	n	0.02	1	65	1	65	n	ENSMUSG00000036908.18	Unc93b1	chr19	protein_coding	unc-93 homolog B1, TLR signaling regulator
known_NIR_9581	chr19	3986422	3991885	+	3986422;3991681	3991520;3991885	ES	ENSMUST00000165711.3	known	0.00	0	73.0	0	95;51	n	0.04	2	46.5	2	56;37	y	0.05	4	73.0	4	80;66	y	0.01	1	70.0	1	74;66	n	0.00	0	81.5	0	91;72	n	0.02	1	57.0	1	64;50	n	0.00	0	68.5	0	63;74	n	0.03	1	36.0	1	31;41	n	0.00	0	45.5	0	47;44	n	0.00	0	60.5	0	67;54	n	0.00	0	41.5	0	46;37	n	0.02	1	62.0	1	65;59	n	ENSMUSG00000036908.18	Unc93b1	chr19	protein_coding	unc-93 homolog B1, TLR signaling regulator
known_NIR_9582	chr19	3986422	3991885	+	3991681	3991885	5pMXE	ENSMUST00000237030.2	known	0.00	0	51	0	51	n	0.05	2	37	2	37	y	0.06	4	66	4	66	y	0.01	1	66	1	66	n	0.00	0	72	0	72	n	0.02	1	50	1	50	n	0.00	0	74	0	74	n	0.02	1	41	1	41	n	0.00	0	44	0	44	n	0.00	0	54	0	54	n	0.00	0	37	0	37	n	0.02	1	59	1	59	n	ENSMUSG00000036908.18	Unc93b1	chr19	protein_coding	unc-93 homolog B1, TLR signaling regulator
known_NIR_9583	chr19	40079549;40080824	40080648;40085161	+	40079549	40085161	cassetteExon	ENSMUST00000068094.13	known	0.99	895.5	5	795;996	5	y	1.00	609.5	0	500;719	0	n	1.00	47.0	0	45;49	0	n	1.00	1163.5	0	1030;1297	0	n	1.00	497.5	0	438;557	0	n	1.00	12.5	0	14;11	0	n	1.00	598.0	3	511;685	3	y	1.00	29.0	0	24;34	0	n	1.00	1291.5	4	1119;1464	4	y	1.00	1524.5	3	1303;1746	3	y	1.00	1249.0	2	1005;1493	2	y	1.00	801.0	0	701;901	0	n	ENSMUSG00000054827.13	Cyp2c50	chr19	protein_coding	cytochrome P450, family 2, subfamily c, polypeptide 50
known_NIR_9584	chr19	40156067	40175539	-	40156067;40168954	40168805;40175539	ES	ENSMUST00000171604.8	known	0.01	8	700.0	8	1333;67	y	0.01	6	666.5	6	1276;57	y	0.03	9	290.5	9	551;30	y	0.01	7	904.0	7	1745;63	y	0.01	10	763.5	10	1447;80	y	0.02	2	114.5	2	223;6	y	0.01	5	329.5	5	621;38	y	0.00	1	206.5	1	400;13	n	0.02	14	665.0	14	1259;71	y	0.02	9	489.0	9	925;53	y	0.01	9	635.5	9	1212;59	y	0.01	8	761.0	8	1453;69	y	ENSMUSG00000060613.11	Cyp2c70	chr19	protein_coding	cytochrome P450, family 2, subfamily c, polypeptide 70
known_NIR_9585	chr19	40168954	40175539	-	40168954;40172472	40172310;40175539	ES	ENSMUST00000051846.13	known	0.05	67	1161.0	67	1279;1043	y	0.05	57	1111.0	57	1326;896	y	0.06	30	445.0	30	484;406	y	0.03	63	1776.5	63	2009;1544	y	0.06	80	1240.0	80	1368;1112	y	0.04	6	138.0	6	164;112	y	0.06	38	586.0	38	660;512	y	0.03	13	365.5	13	410;321	y	0.06	71	1114.0	71	1284;944	y	0.06	53	829.5	53	928;731	y	0.06	59	911.0	59	1034;788	y	0.05	69	1187.0	69	1363;1011	y	ENSMUSG00000060613.11	Cyp2c70	chr19	protein_coding	cytochrome P450, family 2, subfamily c, polypeptide 70
known_NIR_9586	chr19	40172472	40175539	-	40156067	40175539	A3SS	ENSMUST00000165102.2	known	0.99	1043	8	1043	8	y	0.99	896	6	896	6	y	0.98	406	9	406	9	y	1.00	1544	7	1544	7	y	0.99	1112	10	1112	10	y	0.98	112	2	112	2	y	0.99	512	5	512	5	y	1.00	321	1	321	1	n	0.99	944	14	944	14	y	0.99	731	9	731	9	y	0.99	788	9	788	9	y	0.99	1011	8	1011	8	y	ENSMUSG00000060613.11	Cyp2c70	chr19	protein_coding	cytochrome P450, family 2, subfamily c, polypeptide 70
known_NIR_9587	chr19	40287965	40298025	-	40287965	40288687	A5SS&ES	ENSMUST00000225710.2	known	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.18	2	9	2	9	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000025006.19	Sorbs1	chr19	protein_coding	sorbin and SH3 domain containing 1
known_NIR_9588	chr19	40287965	40298025	-	40287965	40300113	A5SS	ENSMUST00000226047.2	known	0.00	0	23	0	23	n	0.00	0	17	0	17	n	0.00	0	25	0	25	n	0.00	0	36	0	36	n	0.00	0	60	0	60	n	0.00	0	17	0	17	n	0.04	2	44	2	44	y	0.00	0	24	0	24	n	0.00	0	23	0	23	n	0.00	0	80	0	80	n	0.00	0	35	0	35	n	0.00	0	52	0	52	n	ENSMUSG00000025006.19	Sorbs1	chr19	protein_coding	sorbin and SH3 domain containing 1
known_NIR_9589	chr19	40287965	40300113	-	40287965;40298777	40298025;40300113	ES	ENSMUST00000238831.2	known	1.00	23	0.0	23	0;0	n	1.00	17	0.0	17	0;0	n	1.00	25	0.0	25	0;0	n	1.00	36	0.0	36	0;0	n	1.00	60	0.0	60	0;0	n	1.00	17	0.0	17	0;0	n	0.82	44	9.5	44	2;17	y	1.00	24	0.0	24	0;0	n	1.00	23	0.0	23	0;0	n	1.00	80	0.0	80	0;0	n	1.00	35	0.0	35	0;0	n	1.00	52	0.0	52	0;0	n	ENSMUSG00000025006.19	Sorbs1	chr19	protein_coding	sorbin and SH3 domain containing 1
known_NIR_9590	chr19	40287965	40300113	-	40298777	40300113	A3SS&ES	ENSMUST00000239304.2	known	1.00	23	0	23	0	n	1.00	17	0	17	0	n	1.00	25	0	25	0	n	1.00	36	0	36	0	n	1.00	60	0	60	0	n	1.00	17	0	17	0	n	0.72	44	17	44	17	y	1.00	24	0	24	0	n	1.00	23	0	23	0	n	1.00	80	0	80	0	n	1.00	35	0	35	0	n	1.00	52	0	52	0	n	ENSMUSG00000025006.19	Sorbs1	chr19	protein_coding	sorbin and SH3 domain containing 1
known_NIR_9591	chr19	40287965;40288746	40288687;40300113	-	40287965	40300113	cassetteExon	ENSMUST00000226047.2	known	0.04	1.0	23	1;1	23	n	0.00	0.0	17	0;0	17	n	0.06	1.5	25	1;2	25	n	0.06	2.5	36	2;3	36	y	0.02	1.0	60	1;1	60	n	0.00	0.0	17	0;0	17	n	0.10	5.0	44	9;1	44	n	0.08	2.0	24	1;3	24	n	0.00	0.0	23	0;0	23	n	0.02	1.5	80	2;1	80	n	0.01	0.5	35	1;0	35	n	0.03	1.5	52	1;2	52	n	ENSMUSG00000025006.19	Sorbs1	chr19	protein_coding	sorbin and SH3 domain containing 1
known_NIR_9592	chr19	40306512	40313191	-	40306512;40310404	40310237;40313191	ES	ENSMUST00000239304.2	known	0.26	4	11.5	4	12;11	y	0.30	6	14.0	6	15;13	y	0.50	19	19.0	19	22;16	y	0.33	15	31.0	15	31;31	y	0.28	13	34.0	13	43;25	y	0.53	8	7.0	8	8;6	y	0.26	15	42.5	15	37;48	y	0.33	9	18.0	9	15;21	y	0.27	6	16.0	6	22;10	y	0.57	36	27.5	36	26;29	y	0.33	9	18.5	9	21;16	y	0.40	16	24.0	16	32;16	y	ENSMUSG00000025006.19	Sorbs1	chr19	protein_coding	sorbin and SH3 domain containing 1
known_NIR_9593	chr19	40325479	40328489	-	40325479	40338343	A5SS	ENSMUST00000239304.2	known	0.11	3	24	3	24	y	0.08	1	12	1	12	n	0.03	1	31	1	31	n	0.00	0	41	0	41	n	0.02	1	44	1	44	n	0.15	2	11	2	11	y	0.41	19	27	19	27	y	0.12	3	23	3	23	y	0.00	0	28	0	28	n	0.03	2	65	2	65	y	0.00	0	21	0	21	n	0.05	2	39	2	39	y	ENSMUSG00000025006.19	Sorbs1	chr19	protein_coding	sorbin and SH3 domain containing 1
known_NIR_9594	chr19	40325479	40329129	-	40325479	40338343	A5SS	ENSMUST00000239304.2	known	0.00	0	24	0	24	n	0.00	0	12	0	12	n	0.00	0	31	0	31	n	0.00	0	41	0	41	n	0.00	0	44	0	44	n	0.00	0	11	0	11	n	0.00	0	27	0	27	n	0.00	0	23	0	23	n	0.00	0	28	0	28	n	0.02	1	65	1	65	n	0.09	2	21	2	21	y	0.00	0	39	0	39	n	ENSMUSG00000025006.19	Sorbs1	chr19	protein_coding	sorbin and SH3 domain containing 1
known_NIR_9595	chr19	40332883	40338343	-	40325479	40338343	A3SS	ENSMUST00000239304.2	known	0.00	0	24	0	24	n	0.00	0	12	0	12	n	0.03	1	31	1	31	n	0.07	3	41	3	41	y	0.00	0	44	0	44	n	0.08	1	11	1	11	n	0.31	12	27	12	27	y	0.00	0	23	0	23	n	0.00	0	28	0	28	n	0.00	0	65	0	65	n	0.09	2	21	2	21	y	0.11	5	39	5	39	y	ENSMUSG00000025006.19	Sorbs1	chr19	protein_coding	sorbin and SH3 domain containing 1
known_NIR_9596	chr19	40341009;40349947	40349486;40351646	-	40341009	40351646	cassetteExon	ENSMUST00000239304.2	known	0.00	0.0	12	0;0	12	n	0.00	0.0	18	0;0	18	n	0.00	0.0	22	0;0	22	n	0.00	0.0	17	0;0	17	n	0.00	0.0	35	0;0	35	n	0.00	0.0	11	0;0	11	n	0.10	4.0	35	2;6	35	y	0.00	0.0	22	0;0	22	n	0.00	0.0	19	0;0	19	n	0.00	0.0	43	0;0	43	n	0.00	0.0	22	0;0	22	n	0.00	0.0	47	0;0	47	n	ENSMUSG00000025006.19	Sorbs1	chr19	protein_coding	sorbin and SH3 domain containing 1
known_NIR_9597	chr19	40341009;40349947	40349873;40351646	-	40341009	40351646	cassetteExon	ENSMUST00000239304.2	known	0.00	0.0	12	0;0	12	n	0.00	0.0	18	0;0	18	n	0.00	0.0	22	0;0	22	n	0.00	0.0	17	0;0	17	n	0.00	0.0	35	0;0	35	n	0.00	0.0	11	0;0	11	n	0.19	8.0	35	10;6	35	y	0.00	0.0	22	0;0	22	n	0.00	0.0	19	0;0	19	n	0.00	0.0	43	0;0	43	n	0.00	0.0	22	0;0	22	n	0.00	0.0	47	0;0	47	n	ENSMUSG00000025006.19	Sorbs1	chr19	protein_coding	sorbin and SH3 domain containing 1
known_NIR_9598	chr19	40353610	40361920	-	40353610;40358163	40358134;40361920	ES	ENSMUST00000239304.2	known	0.08	1	12.0	1	11;13	n	0.10	1	9.0	1	10;8	n	0.29	14	34.0	14	30;38	y	0.06	1	15.5	1	16;15	n	0.15	6	33.0	6	28;38	y	0.21	4	15.0	4	16;14	y	0.26	11	31.5	11	28;35	y	0.11	2	16.0	2	14;18	y	0.12	1	7.5	1	7;8	n	0.06	2	29.0	2	26;32	y	0.15	1	5.5	1	6;5	n	0.21	6	22.0	6	23;21	y	ENSMUSG00000025006.19	Sorbs1	chr19	protein_coding	sorbin and SH3 domain containing 1
known_NIR_9599	chr19	40362061	40370965	-	40362061	40365089	5pMXE	ENSMUST00000239304.2	known	1.00	4	0	4	0	n	1.00	6	0	6	0	n	0.62	24	15	24	15	y	0.94	15	1	15	1	n	0.88	28	4	28	4	y	0.73	11	4	11	4	y	0.43	12	16	12	16	y	0.89	25	3	25	3	y	1.00	4	0	4	0	n	0.81	17	4	17	4	y	1.00	7	0	7	0	n	0.79	15	4	15	4	y	ENSMUSG00000025006.19	Sorbs1	chr19	protein_coding	sorbin and SH3 domain containing 1
known_NIR_9600	chr19	40362061	40370965	-	40362061;40365460	40365428;40370965	ES	ENSMUST00000226047.2	known	1.00	4	0.0	4	0;0	n	1.00	6	0.0	6	0;0	n	0.76	24	7.5	24	1;14	n	0.97	15	0.5	15	0;1	n	0.95	28	1.5	28	0;3	n	0.92	11	1.0	11	0;2	n	0.86	12	2.0	12	0;4	n	0.89	25	3.0	25	1;5	n	0.89	4	0.5	4	0;1	n	0.83	17	3.5	17	4;3	y	0.78	7	2.0	7	0;4	n	0.81	15	3.5	15	3;4	y	ENSMUSG00000025006.19	Sorbs1	chr19	protein_coding	sorbin and SH3 domain containing 1
known_NIR_9601	chr19	40362061	40370965	-	40365460	40370965	3pMXE	ENSMUST00000223724.2	known	1.00	4	0	4	0	n	1.00	6	0	6	0	n	0.63	24	14	24	14	y	0.94	15	1	15	1	n	0.90	28	3	28	3	y	0.85	11	2	11	2	y	0.75	12	4	12	4	y	0.83	25	5	25	5	y	0.80	4	1	4	1	n	0.85	17	3	17	3	y	0.64	7	4	7	4	y	0.79	15	4	15	4	y	ENSMUSG00000025006.19	Sorbs1	chr19	protein_coding	sorbin and SH3 domain containing 1
known_NIR_9602	chr19	40362061;40365460	40365089;40370965	-	40362061	40370965	cassetteExon	ENSMUST00000224247.2	known	0.00	0.0	4	0;0	4	n	0.00	0.0	6	0;0	6	n	0.38	14.5	24	15;14	24	y	0.06	1.0	15	1;1	15	n	0.11	3.5	28	4;3	28	y	0.21	3.0	11	4;2	11	y	0.45	10.0	12	16;4	12	y	0.14	4.0	25	3;5	25	y	0.11	0.5	4	0;1	4	n	0.17	3.5	17	4;3	17	y	0.22	2.0	7	0;4	7	n	0.21	4.0	15	4;4	15	y	ENSMUSG00000025006.19	Sorbs1	chr19	protein_coding	sorbin and SH3 domain containing 1
known_NIR_9603	chr19	4036611	4036823	+	4036611	4036828	A3SS	ENSMUST00000236224.2	known	0.90	75	8	75	8	y	0.81	48	11	48	11	y	0.84	26	5	26	5	y	0.83	109	23	109	23	y	0.82	83	18	83	18	y	0.76	25	8	25	8	y	0.80	74	19	74	19	y	0.80	36	9	36	9	y	0.85	68	12	68	12	y	0.82	106	23	106	23	y	0.80	73	18	73	18	y	0.75	62	21	62	21	y	ENSMUSG00000024866.11	Acy3	chr19	protein_coding	aspartoacylase (aminoacylase) 3
known_NIR_9604	chr19	4036611	4037051	+	4036611;4036951	4036823;4037051	ES	ENSMUST00000236510.2	known	0.02	3	131.0	3	75;187	y	0.06	6	91.0	6	48;134	y	0.07	3	38.0	3	26;50	y	0.02	3	159.0	3	109;209	y	0.03	4	136.0	4	83;189	y	0.10	5	47.0	5	25;69	y	0.02	2	121.5	2	74;169	y	0.06	4	60.5	4	36;85	y	0.03	4	120.5	4	68;173	y	0.01	2	177.0	2	106;248	y	0.04	7	155.5	7	73;238	y	0.02	2	112.0	2	62;162	y	ENSMUSG00000024866.11	Acy3	chr19	protein_coding	aspartoacylase (aminoacylase) 3
known_NIR_9605	chr19	4036611	4037051	+	4036611;4036951	4036828;4037051	ES	ENSMUST00000236224.2	known	0.03	3	97.5	3	8;187	y	0.08	6	72.5	6	11;134	y	0.10	3	27.5	3	5;50	y	0.03	3	116.0	3	23;209	y	0.04	4	103.5	4	18;189	y	0.11	5	38.5	5	8;69	y	0.02	2	94.0	2	19;169	y	0.08	4	47.0	4	9;85	y	0.04	4	92.5	4	12;173	y	0.01	2	135.5	2	23;248	y	0.05	7	128.0	7	18;238	y	0.02	2	91.5	2	21;162	y	ENSMUSG00000024866.11	Acy3	chr19	protein_coding	aspartoacylase (aminoacylase) 3
known_NIR_9606	chr19	4036611	4037051	+	4036951	4037051	A5SS	ENSMUST00000237910.2	known	0.02	3	187	3	187	y	0.04	6	134	6	134	y	0.06	3	50	3	50	y	0.01	3	209	3	209	y	0.02	4	189	4	189	y	0.07	5	69	5	69	y	0.01	2	169	2	169	y	0.04	4	85	4	85	y	0.02	4	173	4	173	y	0.01	2	248	2	248	y	0.03	7	238	7	238	y	0.01	2	162	2	162	y	ENSMUSG00000024866.11	Acy3	chr19	protein_coding	aspartoacylase (aminoacylase) 3
known_NIR_9607	chr19	40381960;40384212	40384123;40386986	-	40381960	40386986	cassetteExon	ENSMUST00000226047.2	known	0.00	0.0	15	0;0	15	n	0.00	0.0	8	0;0	8	n	0.00	0.0	43	0;0	43	n	0.00	0.0	21	0;0	21	n	0.00	0.0	26	0;0	26	n	0.00	0.0	19	0;0	19	n	0.29	7.5	18	5;10	18	y	0.00	0.0	22	0;0	22	n	0.00	0.0	14	0;0	14	n	0.00	0.0	26	0;0	26	n	0.00	0.0	15	0;0	15	n	0.02	0.5	25	0;1	25	n	ENSMUSG00000025006.19	Sorbs1	chr19	protein_coding	sorbin and SH3 domain containing 1
known_NIR_9608	chr19	40439842	40475941	-	40439842	40502115	A5SS	ENSMUST00000226047.2	known	0.33	2	4	2	4	n	0.67	4	2	4	2	n	0.70	7	3	7	3	y	0.33	3	6	3	6	n	0.00	0	14	0	14	n	0.57	4	3	4	3	n	0.31	4	9	4	9	y	0.33	2	4	2	4	n	0.00	0	2	0	2	n	0.27	3	8	3	8	y	0.50	2	2	2	2	n	0.27	3	8	3	8	y	ENSMUSG00000025006.19	Sorbs1	chr19	protein_coding	sorbin and SH3 domain containing 1
known_NIR_9609	chr19	40439842;40490029	40489893;40502115	-	40439842	40502115	cassetteExon	ENSMUST00000226047.2	known	0.00	0.0	4	0;0	4	n	0.33	1.0	2	2;0	2	n	0.00	0.0	3	0;0	3	n	0.00	0.0	6	0;0	6	n	0.12	2.0	14	2;2	14	y	0.00	0.0	3	0;0	3	n	0.14	1.5	9	2;1	9	n	0.00	0.0	4	0;0	4	n	0.33	1.0	2	0;2	2	n	0.00	0.0	8	0;0	8	n	0.00	0.0	2	0;0	2	n	0.00	0.0	8	0;0	8	n	ENSMUSG00000025006.19	Sorbs1	chr19	protein_coding	sorbin and SH3 domain containing 1
known_NIR_9610	chr19	4054816	4056061	+	4054816	4056110	A3SS	ENSMUST00000025806.5	known	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.15	2	11	2	11	y	0.50	2	2	2	2	n	0.50	3	3	3	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	0.50	3	3	3	3	n	0.14	1	6	1	6	n	ENSMUSG00000024871.12	Doc2g	chr19	protein_coding	double C2, gamma
known_NIR_9611	chr19	4057939	4058048	-	4057915	4058048	A3SS	ENSMUST00000237862.2	known	0.00	0	506	0	506	n	0.00	0	519	0	519	n	0.00	0	482	0	482	n	0.00	0	414	0	414	n	0.00	0	527	0	527	n	0.00	0	326	0	326	n	0.00	3	703	3	703	y	0.00	0	267	0	267	n	0.01	5	518	5	518	y	0.00	0	734	0	734	n	0.00	1	603	1	603	n	0.00	0	583	0	583	n	ENSMUSG00000037916.15	Ndufv1	chr19	protein_coding	NADH:ubiquinone oxidoreductase core subunit V1
known_NIR_9612	chr19	4060009	4061346	-	4060009	4061102	A5SS	ENSMUST00000150852.2	known	0.00	0	332	0	332	n	0.00	0	327	0	327	n	0.00	0	408	0	408	n	0.00	2	435	2	435	y	0.00	0	454	0	454	n	0.00	0	248	0	248	n	0.00	0	516	0	516	n	0.00	0	236	0	236	n	0.00	0	361	0	361	n	0.00	0	543	0	543	n	0.00	0	448	0	448	n	0.00	0	562	0	562	n	ENSMUSG00000037916.15	Ndufv1	chr19	protein_coding	NADH:ubiquinone oxidoreductase core subunit V1
known_NIR_9613	chr19	4060009	4061346	-	4060009;4061272	4061102;4061346	ES	ENSMUST00000237862.2	known	0.00	0	302.5	0	332;273	n	0.00	0	296.5	0	327;266	n	0.00	0	398.0	0	408;388	n	0.00	2	439.5	2	435;444	y	0.00	0	443.0	0	454;432	n	0.00	0	237.0	0	248;226	n	0.00	0	506.5	0	516;497	n	0.00	0	241.0	0	236;246	n	0.00	0	337.0	0	361;313	n	0.00	0	541.5	0	543;540	n	0.00	0	421.0	0	448;394	n	0.00	0	546.0	0	562;530	n	ENSMUSG00000037916.15	Ndufv1	chr19	protein_coding	NADH:ubiquinone oxidoreductase core subunit V1
known_NIR_9614	chr19	4060009	4061346	-	4061272	4061346	A3SS&ES	ENSMUST00000237129.2	known	0.00	0	273	0	273	n	0.00	0	266	0	266	n	0.00	0	388	0	388	n	0.00	2	444	2	444	y	0.00	0	432	0	432	n	0.00	0	226	0	226	n	0.00	0	497	0	497	n	0.00	0	246	0	246	n	0.00	0	313	0	313	n	0.00	0	540	0	540	n	0.00	0	394	0	394	n	0.00	0	530	0	530	n	ENSMUSG00000037916.15	Ndufv1	chr19	protein_coding	NADH:ubiquinone oxidoreductase core subunit V1
known_NIR_9615	chr19	4060019	4061102	-	4060009	4061102	A3SS	ENSMUST00000237862.2	known	0.01	2	332	2	332	y	0.00	1	327	1	327	n	0.00	0	408	0	408	n	0.00	0	435	0	435	n	0.00	0	454	0	454	n	0.00	1	248	1	248	n	0.00	0	516	0	516	n	0.01	2	236	2	236	y	0.00	0	361	0	361	n	0.00	0	543	0	543	n	0.00	2	448	2	448	y	0.01	4	562	4	562	y	ENSMUSG00000037916.15	Ndufv1	chr19	protein_coding	NADH:ubiquinone oxidoreductase core subunit V1
known_NIR_9616	chr19	4061424	4062551	-	4061428	4062551	A3SS	ENSMUST00000042497.14	known	0.02	6	300	6	300	y	0.02	6	309	6	309	y	0.01	5	453	5	453	y	0.00	2	450	2	450	y	0.02	8	490	8	490	y	0.02	5	223	5	223	y	0.02	13	540	13	540	y	0.02	5	248	5	248	y	0.02	6	314	6	314	y	0.01	9	595	9	595	y	0.02	8	441	8	441	y	0.01	5	571	5	571	y	ENSMUSG00000037916.15	Ndufv1	chr19	protein_coding	NADH:ubiquinone oxidoreductase core subunit V1
known_NIR_9617	chr19	4061428	4062551	-	4061428	4062594	A5SS	ENSMUST00000237862.2	known	1.00	300	0	300	0	n	1.00	309	0	309	0	n	1.00	453	0	453	0	n	1.00	450	0	450	0	n	1.00	490	1	490	1	n	1.00	223	0	223	0	n	1.00	540	0	540	0	n	1.00	248	0	248	0	n	1.00	314	0	314	0	n	1.00	595	0	595	0	n	1.00	441	0	441	0	n	1.00	571	2	571	2	y	ENSMUSG00000037916.15	Ndufv1	chr19	protein_coding	NADH:ubiquinone oxidoreductase core subunit V1
known_NIR_9618	chr19	4061428	4062657	-	4061428	4062551	A5SS	ENSMUST00000042497.14	known	0.00	0	300	0	300	n	0.00	0	309	0	309	n	0.00	2	453	2	453	y	0.00	0	450	0	450	n	0.00	0	490	0	490	n	0.00	0	223	0	223	n	0.00	2	540	2	540	y	0.00	0	248	0	248	n	0.00	0	314	0	314	n	0.00	0	595	0	595	n	0.00	0	441	0	441	n	0.00	0	571	0	571	n	ENSMUSG00000037916.15	Ndufv1	chr19	protein_coding	NADH:ubiquinone oxidoreductase core subunit V1
known_NIR_9619	chr19	4085931	4086279	-	4085931	4086688	A5SS	ENSMUST00000169613.4	known	0.00	0	7258	0	7258	n	0.00	5	5612	5	5612	y	0.00	0	4840	0	4840	n	0.00	2	6848	2	6848	y	0.00	2	9073	2	9073	y	0.00	0	4587	0	4587	n	0.00	0	8972	0	8972	n	0.00	0	4526	0	4526	n	0.00	8	7875	8	7875	y	0.00	0	7360	0	7360	n	0.00	0	7577	0	7577	n	0.00	0	9852	0	9852	n	ENSMUSG00000060803.7	Gstp1	chr19	protein_coding	glutathione S-transferase, pi 1
known_NIR_9620	chr19	4087471	4087585	-	4087396	4087585	A3SS	ENSMUST00000169613.4	known	0.00	39	8169	39	8169	y	0.01	27	5105	27	5105	y	0.01	61	5660	61	5660	y	0.01	44	8057	44	8057	y	0.01	79	10887	79	10887	y	0.01	42	5200	42	5200	y	0.01	49	9091	49	9091	y	0.01	46	5316	46	5316	y	0.00	43	8861	43	8861	y	0.01	48	8074	48	8074	y	0.00	30	7962	30	7962	y	0.00	53	11295	53	11295	y	ENSMUSG00000060803.7	Gstp1	chr19	protein_coding	glutathione S-transferase, pi 1
known_NIR_9621	chr19	4087620	4087866	-	4087620	4087863	A5SS	ENSMUST00000169613.4	known	0.01	70	5845	70	5845	y	0.01	44	3628	44	3628	y	0.01	48	4195	48	4195	y	0.01	81	5875	81	5875	y	0.01	95	7884	95	7884	y	0.01	51	3734	51	3734	y	0.01	81	6827	81	6827	y	0.01	45	3898	45	3898	y	0.01	91	6590	91	6590	y	0.01	83	5923	83	5923	y	0.01	65	5767	65	5767	y	0.01	100	8115	100	8115	y	ENSMUSG00000060803.7	Gstp1	chr19	protein_coding	glutathione S-transferase, pi 1
known_NIR_9622	chr19	40899553	40899942	+	40899553	40904792	A3SS	ENSMUST00000235235.2	known	1.00	4	0	4	0	n	0.60	3	2	3	2	n	0.70	7	3	7	3	y	0.50	1	1	1	1	n	0.57	4	3	4	3	n	1.00	1	0	1	0	n	0.71	5	2	5	2	n	0.60	3	2	3	2	n	1.00	5	0	5	0	n	0.75	3	1	3	1	n	1.00	1	0	1	0	n	1.00	5	0	5	0	n	ENSMUSG00000049164.8	Zfp518a	chr19	protein_coding	zinc finger protein 518A
known_NIR_9623	chr19	4091938	4092567	-	4091938	4092165	5pMXE	ENSMUST00000042700.12	known	0.57	8	6	8	6	y	0.53	10	9	10	9	y	0.83	55	11	55	11	y	0.58	11	8	11	8	y	0.83	38	8	38	8	y	0.80	66	17	66	17	y	0.38	23	37	23	37	y	0.91	52	5	52	5	y	0.47	7	8	7	8	y	0.42	5	7	5	7	y	0.35	7	13	7	13	y	0.54	14	12	14	12	y	ENSMUSG00000038155.12	Gstp2	chr19	protein_coding	glutathione S-transferase, pi 2
known_NIR_9624	chr19	4091938	4095924	-	4091938	4092165	5pMXE	ENSMUST00000042700.12	known	0.14	1	6	1	6	n	0.00	0	9	0	9	n	0.08	1	11	1	11	n	0.20	2	8	2	8	y	0.00	0	8	0	8	n	0.11	2	17	2	17	y	0.05	2	37	2	37	y	0.00	0	5	0	5	n	0.11	1	8	1	8	n	0.30	3	7	3	7	y	0.07	1	13	1	13	n	0.14	2	12	2	12	y	ENSMUSG00000038155.12	Gstp2	chr19	protein_coding	glutathione S-transferase, pi 2
known_NIR_9625	chr19	4091938;4092671	4092567;4095924	-	4091938	4095924	cassetteExon	ENSMUST00000235381.2	known	0.80	4.0	1	8;0	1	n	1.00	5.0	0	10;0	0	n	0.97	28.5	1	55;2	1	n	0.73	5.5	2	11;0	2	n	1.00	19.0	0	38;0	0	n	0.94	33.0	2	66;0	2	n	0.87	13.0	2	23;3	2	y	1.00	26.0	0	52;0	0	n	0.83	5.0	1	7;3	1	n	0.45	2.5	3	5;0	3	n	0.83	5.0	1	7;3	1	n	0.80	8.0	2	14;2	2	y	ENSMUSG00000038155.12	Gstp2	chr19	protein_coding	glutathione S-transferase, pi 2
known_NIR_9626	chr19	41044282	41047505	+	41044282;41047065	41047006;41047505	ES	ENSMUST00000051806.12	known	0.81	13	3.0	13	4;2	y	0.80	10	2.5	10	2;3	y	0.00	0	0.5	0	1;0	n	0.70	8	3.5	8	3;4	y	0.67	1	0.5	1	0;1	n	0.77	5	1.5	5	2;1	n	0.80	4	1.0	4	0;2	n	0.50	1	1.0	1	1;1	n	0.44	2	2.5	2	1;4	n	0.61	14	9.0	14	8;10	y	0.90	13	1.5	13	3;0	n	0.69	9	4.0	9	4;4	y	ENSMUSG00000025014.14	Dntt	chr19	protein_coding	deoxynucleotidyltransferase, terminal
known_NIR_9627	chr19	4108841	4109424	-	4108841	4109259	5pMXE	ENSMUST00000076451.7	known	0.13	7	46	7	46	y	0.20	10	39	10	39	y	0.17	20	96	20	96	y	0.23	11	37	11	37	y	0.07	6	75	6	75	y	0.17	8	38	8	38	y	0.10	10	86	10	86	y	0.28	14	36	14	36	y	0.12	2	15	2	15	y	0.10	8	70	8	70	y	0.06	2	33	2	33	y	0.10	4	36	4	36	y	ENSMUSG00000058216.14	Gstp3	chr19	protein_coding	glutathione S-transferase pi 3
known_NIR_9628	chr19	4108841	4109424	-	4108841;4109294	4109259;4109424	ES	ENSMUST00000189808.7	known	0.15	7	41.0	7	46;36	y	0.22	10	34.5	10	39;30	y	0.19	20	83.5	20	96;71	y	0.26	11	31.5	11	37;26	y	0.09	6	63.0	6	75;51	y	0.19	8	34.5	8	38;31	y	0.12	10	71.0	10	86;56	y	0.30	14	33.0	14	36;30	y	0.12	2	14.0	2	15;13	y	0.12	8	59.5	8	70;49	y	0.07	2	28.0	2	33;23	y	0.11	4	31.0	4	36;26	y	ENSMUSG00000058216.14	Gstp3	chr19	protein_coding	glutathione S-transferase pi 3
known_NIR_9629	chr19	41471737	41471966	+	41471222	41471966	A5SS	ENSMUST00000067795.13	known	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.12	1	7	1	7	n	0.15	2	11	2	11	y	0.50	1	1	1	1	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.33	1	2	1	2	n	ENSMUSG00000025019.18	Lcor	chr19	protein_coding	ligand dependent nuclear receptor corepressor
known_NIR_9630	chr19	4147733	4147817	+	4147507	4147817	A5SS	ENSMUST00000025779.11	known	0.21	45	169	45	169	y	0.15	30	165	30	165	y	0.24	66	211	66	211	y	0.19	32	139	32	139	y	0.22	66	237	66	237	y	0.23	35	114	35	114	y	0.21	35	134	35	134	y	0.29	55	136	55	136	y	0.15	27	152	27	152	y	0.15	27	150	27	150	y	0.16	35	183	35	183	y	0.12	26	188	26	188	y	ENSMUSG00000024856.11	Cdk2ap2	chr19	protein_coding	CDK2-associated protein 2
known_NIR_9631	chr19	4147907	4148005	+	4147917	4148005	A5SS	ENSMUST00000025779.11	known	0.05	18	329	18	329	y	0.04	15	329	15	329	y	0.09	41	423	41	423	y	0.04	11	276	11	276	y	0.05	25	459	25	459	y	0.08	24	288	24	288	y	0.06	22	326	22	326	y	0.07	20	250	20	250	y	0.04	9	235	9	235	y	0.04	12	265	12	265	y	0.02	7	318	7	318	y	0.03	9	298	9	298	y	ENSMUSG00000024856.11	Cdk2ap2	chr19	protein_coding	CDK2-associated protein 2
known_NIR_9632	chr19	41544140	41570217	+	41544140	41546750	3pMXE	ENSMUST00000067795.13	known	0.38	3	5	3	5	n	0.33	1	2	1	2	n	0.44	8	10	8	10	y	1.00	4	0	4	0	n	0.38	6	10	6	10	y	0.62	5	3	5	3	n	0.25	2	6	2	6	n	1.00	9	0	9	0	n	0.27	3	8	3	8	y	0.50	4	4	4	4	n	0.25	2	6	2	6	n	0.56	5	4	5	4	n	ENSMUSG00000025019.18	Lcor	chr19	protein_coding	ligand dependent nuclear receptor corepressor
known_NIR_9633	chr19	4160659	4160948	+	4160659	4160842	A3SS	ENSMUST00000049658.14	known	0.00	0	9	0	9	n	0.10	1	9	1	9	n	0.15	2	11	2	11	y	0.00	0	5	0	5	n	0.27	3	8	3	8	y	0.17	2	10	2	10	y	0.29	2	5	2	5	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.10	1	9	1	9	n	0.00	0	8	0	8	n	0.17	2	10	2	10	y	ENSMUSG00000024851.15	Pitpnm1	chr19	protein_coding	phosphatidylinositol transfer protein, membrane-associated 1
known_NIR_9634	chr19	4162510	4162662	+	4162510	4162748	A3SS	ENSMUST00000049658.14	known	0.20	4	16	4	16	y	0.00	0	13	0	13	n	0.12	2	14	2	14	y	0.00	0	8	0	8	n	0.05	1	20	1	20	n	0.00	0	4	0	4	n	0.06	1	15	1	15	n	0.00	0	2	0	2	n	0.19	3	13	3	13	y	0.10	1	9	1	9	n	0.17	2	10	2	10	y	0.00	0	5	0	5	n	ENSMUSG00000024851.15	Pitpnm1	chr19	protein_coding	phosphatidylinositol transfer protein, membrane-associated 1
known_NIR_9635	chr19	4171545	4175778	-	4171545	4175730	A5SS	ENSMUST00000117831.8	known	0.00	0	9	0	9	n	0.60	3	2	3	2	n	0.10	1	9	1	9	n	0.25	2	6	2	6	n	0.57	4	3	4	3	n	1.00	3	0	3	0	n	0.08	1	11	1	11	n	0.50	3	3	3	3	n	0.36	5	9	5	9	y	0.44	4	5	4	5	n	0.33	2	4	2	4	n	0.42	5	7	5	7	y	ENSMUSG00000024847.16	Aip	chr19	protein_coding	aryl-hydrocarbon receptor-interacting protein
known_NIR_9636	chr19	4177120	4177576	+	4177120	4177549	A3SS	ENSMUST00000169055.10	known	0.00	0	120	0	120	n	0.00	0	150	0	150	n	0.02	2	117	2	117	y	0.00	0	95	0	95	n	0.01	1	168	1	168	n	0.03	2	61	2	61	y	0.00	0	186	0	186	n	0.00	0	60	0	60	n	0.01	1	97	1	97	n	0.00	0	207	0	207	n	0.00	0	159	0	159	n	0.01	2	143	2	143	y	ENSMUSG00000024845.20	Tmem134	chr19	protein_coding	transmembrane protein 134
known_NIR_9637	chr19	4177131	4177549	+	4177120	4177549	A5SS	ENSMUST00000169055.10	known	0.26	42	120	42	120	y	0.18	34	150	34	150	y	0.16	22	117	22	117	y	0.25	32	95	32	95	y	0.23	49	168	49	168	y	0.19	14	61	14	61	y	0.26	64	186	64	186	y	0.24	19	60	19	60	y	0.22	27	97	27	97	y	0.25	68	207	68	207	y	0.22	46	159	46	159	y	0.23	42	143	42	143	y	ENSMUSG00000024845.20	Tmem134	chr19	protein_coding	transmembrane protein 134
known_NIR_9638	chr19	4177638	4181030	+	4177638	4177759	A3SS&ES	ENSMUST00000138593.10	known	0.00	0	209	0	209	n	0.01	2	190	2	190	y	0.00	0	141	0	141	n	0.00	0	170	0	170	n	0.00	0	234	0	234	n	0.00	0	108	0	108	n	0.00	0	258	0	258	n	0.00	0	98	0	98	n	0.00	0	182	0	182	n	0.00	0	316	0	316	n	0.00	0	241	0	241	n	0.00	0	190	0	190	n	ENSMUSG00000024845.20	Tmem134	chr19	protein_coding	transmembrane protein 134
known_NIR_9639	chr19	4177638	4181030	+	4177638;4177835	4177759;4181030	ES	ENSMUST00000135257.11	known	0.00	0	135.0	0	209;61	n	0.01	2	140.0	2	190;90	y	0.00	0	100.5	0	141;60	n	0.00	0	123.0	0	170;76	n	0.00	0	153.5	0	234;73	n	0.00	0	74.5	0	108;41	n	0.00	0	180.0	0	258;102	n	0.00	0	77.0	0	98;56	n	0.00	0	122.0	0	182;62	n	0.00	0	211.5	0	316;107	n	0.00	0	166.0	0	241;91	n	0.00	0	127.0	0	190;64	n	ENSMUSG00000024845.20	Tmem134	chr19	protein_coding	transmembrane protein 134
known_NIR_9640	chr19	4177638	4181030	+	4177835	4181030	A5SS	ENSMUST00000130619.11	known	0.00	0	61	0	61	n	0.02	2	90	2	90	y	0.00	0	60	0	60	n	0.00	0	76	0	76	n	0.00	0	73	0	73	n	0.00	0	41	0	41	n	0.00	0	102	0	102	n	0.00	0	56	0	56	n	0.00	0	62	0	62	n	0.00	0	107	0	107	n	0.00	0	91	0	91	n	0.00	0	64	0	64	n	ENSMUSG00000024845.20	Tmem134	chr19	protein_coding	transmembrane protein 134
known_NIR_9641	chr19	4177638	4181228	+	4177638;4177835	4177759;4181228	ES	ENSMUST00000169055.10	known	0.02	3	152.5	3	209;96	y	0.03	4	143.0	4	190;96	y	0.01	1	96.0	1	141;51	n	0.02	3	141.5	3	170;113	y	0.02	3	180.5	3	234;127	y	0.00	0	80.5	0	108;53	n	0.03	5	191.5	5	258;125	y	0.00	0	72.0	0	98;46	n	0.03	4	131.5	4	182;81	y	0.01	3	240.5	3	316;165	y	0.03	5	173.5	5	241;106	y	0.05	7	135.5	7	190;81	y	ENSMUSG00000024845.20	Tmem134	chr19	protein_coding	transmembrane protein 134
known_NIR_9642	chr19	4177638	4181228	+	4177835	4181228	A5SS	ENSMUST00000139718.10	known	0.03	3	96	3	96	y	0.04	4	96	4	96	y	0.02	1	51	1	51	n	0.03	3	113	3	113	y	0.02	3	127	3	127	y	0.00	0	53	0	53	n	0.04	5	125	5	125	y	0.00	0	46	0	46	n	0.05	4	81	4	81	y	0.02	3	165	3	165	y	0.05	5	106	5	106	y	0.08	7	81	7	81	y	ENSMUSG00000024845.20	Tmem134	chr19	protein_coding	transmembrane protein 134
known_NIR_9643	chr19	4177638	4181228	+	4181074	4181228	A5SS&ES	ENSMUST00000130619.11	known	0.03	3	108	3	108	y	0.03	4	142	4	142	y	0.01	1	138	1	138	n	0.03	3	99	3	99	y	0.03	3	113	3	113	y	0.00	0	64	0	64	n	0.03	5	152	5	152	y	0.00	0	88	0	88	n	0.04	4	95	4	95	y	0.01	3	203	3	203	y	0.04	5	135	5	135	y	0.06	7	115	7	115	y	ENSMUSG00000024845.20	Tmem134	chr19	protein_coding	transmembrane protein 134
known_NIR_9644	chr19	4177638;4181074	4181030;4181228	+	4177638	4181228	cassetteExon	ENSMUST00000151401.11	known	0.95	54.0	3	0;108	3	n	0.95	72.0	4	2;142	4	y	0.99	69.0	1	0;138	1	n	0.94	49.5	3	0;99	3	n	0.95	56.5	3	0;113	3	n	1.00	32.0	0	0;64	0	n	0.94	76.0	5	0;152	5	n	1.00	44.0	0	0;88	0	n	0.92	47.5	4	0;95	4	n	0.97	101.5	3	0;203	3	n	0.93	67.5	5	0;135	5	n	0.89	57.5	7	0;115	7	n	ENSMUSG00000024845.20	Tmem134	chr19	protein_coding	transmembrane protein 134
known_NIR_9645	chr19	4177638;4181074	4181030;4181228	+	4177638;4177835	4177759;4181228	MXE	ENSMUST00000169055.10	known	0.26	54.0	152.5	0;108	209;96	n	0.33	72.0	143.0	2;142	190;96	y	0.42	69.0	96.0	0;138	141;51	n	0.26	49.5	141.5	0;99	170;113	n	0.24	56.5	180.5	0;113	234;127	n	0.28	32.0	80.5	0;64	108;53	n	0.28	76.0	191.5	0;152	258;125	n	0.38	44.0	72.0	0;88	98;46	n	0.27	47.5	131.5	0;95	182;81	n	0.30	101.5	240.5	0;203	316;165	n	0.28	67.5	173.5	0;135	241;106	n	0.30	57.5	135.5	0;115	190;81	n	ENSMUSG00000024845.20	Tmem134	chr19	protein_coding	transmembrane protein 134
known_NIR_9646	chr19	4177835;4181074	4181030;4181228	+	4177835	4181228	cassetteExon	ENSMUST00000169055.10	known	0.47	84.5	96	61;108	96	y	0.55	116.0	96	90;142	96	y	0.66	99.0	51	60;138	51	y	0.44	87.5	113	76;99	113	y	0.42	93.0	127	73;113	127	y	0.50	52.5	53	41;64	53	y	0.50	127.0	125	102;152	125	y	0.61	72.0	46	56;88	46	y	0.49	78.5	81	62;95	81	y	0.48	155.0	165	107;203	165	y	0.52	113.0	106	91;135	106	y	0.52	89.5	81	64;115	81	y	ENSMUSG00000024845.20	Tmem134	chr19	protein_coding	transmembrane protein 134
known_NIR_9647	chr19	41913678	41914971	-	41913678	41919795	A5SS	ENSMUST00000112123.4	known	1.00	44	0	44	0	n	1.00	44	0	44	0	n	1.00	49	0	49	0	n	0.88	23	3	23	3	y	1.00	56	0	56	0	n	1.00	27	0	27	0	n	1.00	58	0	58	0	n	1.00	23	0	23	0	n	0.97	39	1	39	1	n	1.00	39	0	39	0	n	1.00	37	0	37	0	n	0.97	33	1	33	1	n	ENSMUSG00000034321.15	Exosc1	chr19	protein_coding	exosome component 1
known_NIR_9648	chr19	41916552	41919795	-	41913678	41919795	A3SS	ENSMUST00000112123.4	known	1.00	30	0	30	0	n	1.00	45	0	45	0	n	1.00	62	0	62	0	n	0.91	30	3	30	3	y	1.00	59	0	59	0	n	1.00	46	0	46	0	n	1.00	43	0	43	0	n	1.00	31	0	31	0	n	0.97	34	1	34	1	n	1.00	47	0	47	0	n	1.00	58	0	58	0	n	0.98	45	1	45	1	n	ENSMUSG00000034321.15	Exosc1	chr19	protein_coding	exosome component 1
known_NIR_9649	chr19	41922104	41923177	+	41922104	41923279	A3SS	ENSMUST00000224258.2	known	1.00	34	0	34	0	n	1.00	24	0	24	0	n	1.00	43	0	43	0	n	0.85	33	6	33	6	y	1.00	49	0	49	0	n	1.00	26	0	26	0	n	0.96	43	2	43	2	y	1.00	26	0	26	0	n	1.00	31	0	31	0	n	1.00	36	0	36	0	n	0.95	18	1	18	1	n	1.00	28	0	28	0	n	ENSMUSG00000025157.9	Zdhhc16	chr19	protein_coding	zinc finger, DHHC domain containing 16
known_NIR_9650	chr19	41922104	41926042	+	41922104;41923322	41923177;41926042	ES	ENSMUST00000026154.9	known	0.03	1	28.0	1	34;22	n	0.00	0	20.5	0	24;17	n	0.02	1	41.0	1	43;39	n	0.03	1	29.0	1	33;25	n	0.08	4	45.0	4	49;41	y	0.00	0	26.5	0	26;27	n	0.00	0	38.0	0	43;33	n	0.08	2	24.5	2	26;23	y	0.03	1	32.5	1	31;34	n	0.00	0	33.5	0	36;31	n	0.00	0	19.5	0	18;21	n	0.00	0	27.5	0	28;27	n	ENSMUSG00000025157.9	Zdhhc16	chr19	protein_coding	zinc finger, DHHC domain containing 16
known_NIR_9651	chr19	41926551	41926803	+	41926656	41926803	A5SS	ENSMUST00000026154.9	known	0.02	1	46	1	46	n	0.04	2	50	2	50	y	0.08	6	68	6	68	y	0.05	2	36	2	36	y	0.11	7	54	7	54	y	0.03	1	30	1	30	n	0.00	0	65	0	65	n	0.03	1	33	1	33	n	0.04	1	27	1	27	n	0.02	1	49	1	49	n	0.05	2	38	2	38	y	0.03	2	57	2	57	y	ENSMUSG00000025157.9	Zdhhc16	chr19	protein_coding	zinc finger, DHHC domain containing 16
known_NIR_9652	chr19	41926891	41927159	+	41926891	41927247	A3SS	ENSMUST00000026154.9	known	0.14	6	36	6	36	y	0.12	7	51	7	51	y	0.07	4	53	4	53	y	0.14	4	25	4	25	y	0.08	6	68	6	68	y	0.13	4	26	4	26	y	0.07	5	66	5	66	y	0.10	5	46	5	46	y	0.00	0	21	0	21	n	0.04	2	51	2	51	y	0.10	3	26	3	26	y	0.08	6	71	6	71	y	ENSMUSG00000025157.9	Zdhhc16	chr19	protein_coding	zinc finger, DHHC domain containing 16
known_NIR_9653	chr19	41926891	41928127	+	41926891	41927247	A3SS&ES	ENSMUST00000026154.9	known	0.03	1	36	1	36	n	0.00	0	51	0	51	n	0.00	0	53	0	53	n	0.00	0	25	0	25	n	0.00	0	68	0	68	n	0.00	0	26	0	26	n	0.00	0	66	0	66	n	0.00	0	46	0	46	n	0.00	0	21	0	21	n	0.02	1	51	1	51	n	0.00	0	26	0	26	n	0.03	2	71	2	71	y	ENSMUSG00000025157.9	Zdhhc16	chr19	protein_coding	zinc finger, DHHC domain containing 16
known_NIR_9654	chr19	41928172;41928343	41928296;41929089	+	41928172	41929089	cassetteExon	ENSMUST00000026154.9	known	0.57	30.5	23	33;28	23	y	0.49	20.0	21	20;20	21	y	0.45	21.0	26	18;24	26	y	0.67	24.0	12	23;25	12	y	0.61	47.5	30	53;42	30	y	0.51	15.5	15	16;15	15	y	0.58	45.0	32	50;40	32	y	0.67	22.0	11	20;24	11	y	0.63	23.5	14	24;23	14	y	0.69	44.0	20	50;38	20	y	0.68	35.5	17	38;33	17	y	0.50	28.5	28	30;27	28	y	ENSMUSG00000025157.9	Zdhhc16	chr19	protein_coding	zinc finger, DHHC domain containing 16
known_NIR_9655	chr19	41930445;41930663	41930569;41932021	+	41930445	41932021	cassetteExon	ENSMUST00000026154.9	known	0.03	2.0	59	4;0	59	n	0.06	4.5	71	9;0	71	n	0.07	3.0	41	6;0	41	n	0.01	0.5	39	1;0	39	n	0.09	8.5	81	11;6	81	y	0.08	3.0	35	3;3	35	y	0.06	4.0	67	7;1	67	n	0.06	2.0	34	2;2	34	y	0.05	2.5	47	3;2	47	y	0.04	2.5	67	4;1	67	n	0.08	4.0	46	8;0	46	n	0.08	6.0	68	12;0	68	n	ENSMUSG00000025157.9	Zdhhc16	chr19	protein_coding	zinc finger, DHHC domain containing 16
known_NIR_9656	chr19	41936334	41936655	-	41936185	41936655	A3SS	ENSMUST00000167927.8	known	0.03	1	35	1	35	n	0.00	0	32	0	32	n	0.06	2	33	2	33	y	0.00	0	39	0	39	n	0.00	0	74	0	74	n	0.00	0	17	0	17	n	0.00	0	59	0	59	n	0.00	0	20	0	20	n	0.02	1	47	1	47	n	0.00	0	57	0	57	n	0.02	1	46	1	46	n	0.05	3	62	3	62	y	ENSMUSG00000025159.9	Mms19	chr19	protein_coding	MMS19 cytosolic iron-sulfur assembly component
known_NIR_9657	chr19	41942453	41942905	-	41942456	41942905	A3SS	ENSMUST00000167927.8	known	0.51	21	20	21	20	y	0.59	16	11	16	11	y	0.46	27	32	27	32	y	0.56	23	18	23	18	y	0.61	30	19	30	19	y	0.40	12	18	12	18	y	0.55	22	18	22	18	y	0.70	16	7	16	7	y	0.54	19	16	19	16	y	0.39	23	36	23	36	y	0.31	8	18	8	18	y	0.60	32	21	32	21	y	ENSMUSG00000025159.9	Mms19	chr19	protein_coding	MMS19 cytosolic iron-sulfur assembly component
known_NIR_9658	chr19	41944012	41944262	-	41944035	41944262	A3SS	ENSMUST00000167927.8	known	0.89	34	4	34	4	y	0.91	32	3	32	3	y	0.94	47	3	47	3	y	1.00	47	0	47	0	n	0.94	60	4	60	4	y	0.96	22	1	22	1	n	0.94	30	2	30	2	y	0.96	26	1	26	1	n	0.84	37	7	37	7	y	0.86	43	7	43	7	y	1.00	32	0	32	0	n	0.95	57	3	57	3	y	ENSMUSG00000025159.9	Mms19	chr19	protein_coding	MMS19 cytosolic iron-sulfur assembly component
known_NIR_9659	chr19	41944422	41944948	-	41944400	41944948	A3SS	ENSMUST00000167927.8	known	0.23	10	33	10	33	y	0.08	2	22	2	22	y	0.10	4	35	4	35	y	0.02	1	41	1	41	n	0.06	4	64	4	64	y	0.00	0	16	0	16	n	0.07	3	41	3	41	y	0.03	1	31	1	31	n	0.00	0	33	0	33	n	0.11	4	31	4	31	y	0.00	0	28	0	28	n	0.02	1	56	1	56	n	ENSMUSG00000025159.9	Mms19	chr19	protein_coding	MMS19 cytosolic iron-sulfur assembly component
known_NIR_9660	chr19	41951473	41951840	-	41951517	41951840	A3SS	ENSMUST00000167927.8	known	0.00	0	28	0	28	n	0.00	0	22	0	22	n	0.00	0	31	0	31	n	0.03	1	38	1	38	n	0.07	3	43	3	43	y	0.00	0	13	0	13	n	0.03	1	35	1	35	n	0.07	2	27	2	27	y	0.03	1	29	1	29	n	0.03	1	28	1	28	n	0.07	2	26	2	26	y	0.07	4	51	4	51	y	ENSMUSG00000025159.9	Mms19	chr19	protein_coding	MMS19 cytosolic iron-sulfur assembly component
known_NIR_9661	chr19	41951897	41952302	-	41951909	41952302	A3SS	ENSMUST00000167927.8	known	0.00	0	16	0	16	n	0.00	0	26	0	26	n	0.00	0	22	0	22	n	0.00	0	34	0	34	n	0.00	0	51	0	51	n	0.00	0	17	0	17	n	0.00	0	34	0	34	n	0.00	0	22	0	22	n	0.00	0	32	0	32	n	0.00	0	31	0	31	n	0.06	2	31	2	31	y	0.00	0	57	0	57	n	ENSMUSG00000025159.9	Mms19	chr19	protein_coding	MMS19 cytosolic iron-sulfur assembly component
known_NIR_9662	chr19	4198728	4199341	+	4198721	4199341	A5SS	ENSMUST00000123874.8	known	0.80	24	6	24	6	y	0.94	17	1	17	1	n	0.70	19	8	19	8	y	0.62	21	13	21	13	y	0.69	27	12	27	12	y	0.69	11	5	11	5	y	0.65	26	14	26	14	y	0.64	7	4	7	4	y	0.76	22	7	22	7	y	0.72	44	17	44	17	y	0.90	28	3	28	3	y	0.87	39	6	39	6	y	ENSMUSG00000024835.16	Coro1b	chr19	protein_coding	coronin, actin binding protein 1B
known_NIR_9663	chr19	4198728	4199341	+	4198735	4199341	A5SS	ENSMUST00000008893.9	known	0.27	24	65	24	65	y	0.29	17	42	17	42	y	0.21	19	71	19	71	y	0.21	21	78	21	78	y	0.23	27	90	27	90	y	0.19	11	46	11	46	y	0.29	26	65	26	65	y	0.21	7	26	7	26	y	0.27	22	60	22	60	y	0.34	44	84	44	84	y	0.33	28	57	28	57	y	0.35	39	71	39	71	y	ENSMUSG00000024835.16	Coro1b	chr19	protein_coding	coronin, actin binding protein 1B
known_NIR_9664	chr19	4198735	4199341	+	4198721	4199341	A5SS	ENSMUST00000123874.8	known	0.92	65	6	65	6	y	0.98	42	1	42	1	n	0.90	71	8	71	8	y	0.86	78	13	78	13	y	0.88	90	12	90	12	y	0.90	46	5	46	5	y	0.82	65	14	65	14	y	0.87	26	4	26	4	y	0.90	60	7	60	7	y	0.83	84	17	84	17	y	0.95	57	3	57	3	y	0.92	71	6	71	6	y	ENSMUSG00000024835.16	Coro1b	chr19	protein_coding	coronin, actin binding protein 1B
known_NIR_9665	chr19	4199984	4200439	+	4199984	4200089	A3SS	ENSMUST00000236023.2	known	0.00	0	130	0	130	n	0.00	0	85	0	85	n	0.00	0	93	0	93	n	0.00	0	127	0	127	n	0.00	0	138	0	138	n	0.00	0	45	0	45	n	0.00	0	140	0	140	n	0.00	0	61	0	61	n	0.00	0	95	0	95	n	0.00	0	148	0	148	n	0.00	0	121	0	121	n	0.02	2	119	2	119	y	ENSMUSG00000024835.16	Coro1b	chr19	protein_coding	coronin, actin binding protein 1B
known_NIR_9666	chr19	4199984	4200439	+	4199984;4200218	4200089;4200439	ES	ENSMUST00000123874.8	known	0.00	0	145.0	0	130;160	n	0.00	0	112.0	0	85;139	n	0.00	0	124.5	0	93;156	n	0.00	0	149.5	0	127;172	n	0.00	0	152.0	0	138;166	n	0.00	0	58.0	0	45;71	n	0.00	0	164.0	0	140;188	n	0.00	0	88.5	0	61;116	n	0.00	0	110.0	0	95;125	n	0.00	0	177.0	0	148;206	n	0.00	0	139.5	0	121;158	n	0.01	2	141.5	2	119;164	y	ENSMUSG00000024835.16	Coro1b	chr19	protein_coding	coronin, actin binding protein 1B
known_NIR_9667	chr19	42034549	42048327	+	42034549	42040411	3pMXE	ENSMUST00000168414.2	known	1.00	221	0	221	0	n	1.00	224	0	224	0	n	1.00	199	0	199	0	n	0.99	269	2	269	2	y	1.00	294	1	294	1	n	1.00	127	0	127	0	n	0.99	277	2	277	2	y	1.00	167	0	167	0	n	1.00	233	1	233	1	n	0.99	380	2	380	2	y	1.00	291	1	291	1	n	0.99	345	2	345	2	y	ENSMUSG00000025176.15	Hoga1	chr19	protein_coding	4-hydroxy-2-oxoglutarate aldolase 1
known_NIR_9668	chr19	4207198	4207681	-	4207198;4207593	4207481;4207681	ES	ENSMUST00000025749.15	known	0.04	2	45.5	2	38;53	y	0.03	2	57.5	2	63;52	y	0.04	2	44.0	2	43;45	y	0.00	0	52.0	0	42;62	n	0.03	2	58.5	2	49;68	y	0.06	2	29.5	2	25;34	y	0.02	1	56.5	1	51;62	n	0.00	0	37.5	0	32;43	n	0.00	0	36.5	0	34;39	n	0.05	3	59.0	3	48;70	y	0.00	0	60.0	0	57;63	n	0.00	0	50.0	0	35;65	n	ENSMUSG00000024830.18	Rps6kb2	chr19	protein_coding	ribosomal protein S6 kinase, polypeptide 2
known_NIR_9669	chr19	4208362	4208609	-	4208127	4208609	A3SS	ENSMUST00000025749.15	known	0.04	3	67	3	67	y	0.00	0	55	0	55	n	0.02	1	57	1	57	n	0.04	2	51	2	51	y	0.04	2	54	2	54	y	0.04	1	24	1	24	n	0.04	2	49	2	49	y	0.00	0	47	0	47	n	0.06	3	46	3	46	y	0.15	8	46	8	46	y	0.05	3	59	3	59	y	0.02	1	48	1	48	n	ENSMUSG00000024830.18	Rps6kb2	chr19	protein_coding	ribosomal protein S6 kinase, polypeptide 2
known_NIR_9670	chr19	4209326	4211067	-	4209326;4209459	4209402;4211067	ES	ENSMUST00000025749.15	known	0.04	2	54.5	2	49;60	y	0.05	3	56.0	3	65;47	y	0.14	7	44.5	7	56;33	y	0.16	9	46.5	9	56;37	y	0.00	0	59.0	0	60;58	n	0.00	0	39.0	0	46;32	n	0.01	1	66.5	1	68;65	n	0.05	2	36.5	2	41;32	y	0.00	0	45.5	0	50;41	n	0.07	6	74.5	6	85;64	y	0.00	0	49.0	0	52;46	n	0.02	1	54.0	1	59;49	n	ENSMUSG00000024830.18	Rps6kb2	chr19	protein_coding	ribosomal protein S6 kinase, polypeptide 2
known_NIR_9671	chr19	4209326;4209704	4209402;4211067	-	4209326	4211067	cassetteExon	ENSMUST00000237691.2	known	0.93	25.5	2	49;2	2	y	0.92	33.5	3	65;2	3	y	0.81	30.5	7	56;5	7	y	0.76	28.0	9	56;0	9	n	1.00	30.0	0	60;0	0	n	1.00	23.5	0	46;1	0	n	0.97	35.0	1	68;2	1	n	0.91	20.5	2	41;0	2	n	1.00	26.5	0	50;3	0	n	0.88	43.0	6	85;1	6	n	1.00	26.0	0	52;0	0	n	0.97	29.5	1	59;0	1	n	ENSMUSG00000024830.18	Rps6kb2	chr19	protein_coding	ribosomal protein S6 kinase, polypeptide 2
known_NIR_9672	chr19	4209459;4209704	4209565;4211067	-	4209459	4211067	cassetteExon	ENSMUST00000025749.15	known	0.03	2.0	60	2;2	60	y	0.05	2.5	47	3;2	47	y	0.12	4.5	33	4;5	33	y	0.04	1.5	37	3;0	37	n	0.00	0.0	58	0;0	58	n	0.04	1.5	32	2;1	32	n	0.02	1.5	65	1;2	65	n	0.00	0.0	32	0;0	32	n	0.04	1.5	41	0;3	41	n	0.02	1.0	64	1;1	64	n	0.00	0.0	46	0;0	46	n	0.00	0.0	49	0;0	49	n	ENSMUSG00000024830.18	Rps6kb2	chr19	protein_coding	ribosomal protein S6 kinase, polypeptide 2
known_NIR_9673	chr19	42113465;42116933	42116742;42117310	-	42113465	42117310	cassetteExon	ENSMUST00000018965.4	known	0.02	3.0	143	6;0	143	n	0.01	1.5	123	3;0	123	n	0.01	1.5	109	3;0	109	n	0.02	3.5	150	7;0	150	n	0.04	7.5	189	15;0	189	n	0.00	0.0	104	0;0	104	n	0.02	2.5	136	5;0	136	n	0.01	1.0	84	2;0	84	n	0.06	8.0	122	12;4	122	y	0.06	10.5	178	17;4	178	y	0.02	2.5	158	5;0	158	n	0.02	3.5	154	7;0	154	n	ENSMUSG00000018821.4	Avpi1	chr19	protein_coding	arginine vasopressin-induced 1
known_NIR_9674	chr19	42159107	42159985	+	42159224	42159985	A5SS	ENSMUST00000169536.8	known	0.33	4	8	4	8	y	0.12	1	7	1	7	n	0.38	8	13	8	13	y	0.53	8	7	8	7	y	0.45	10	12	10	12	y	0.27	3	8	3	8	y	0.76	13	4	13	4	y	0.44	4	5	4	5	n	0.80	4	1	4	1	n	0.43	9	12	9	12	y	0.58	7	5	7	5	y	0.27	3	8	3	8	y	ENSMUSG00000018820.14	Zfyve27	chr19	protein_coding	zinc finger, FYVE domain containing 27
known_NIR_9675	chr19	42172628	42174244	+	42172628;42174079	42174059;42174244	ES	ENSMUST00000169536.8	known	1.00	15	0.0	15	0;0	n	1.00	11	0.0	11	0;0	n	0.97	15	0.5	15	1;0	n	1.00	14	0.0	14	0;0	n	1.00	20	0.0	20	0;0	n	1.00	15	0.0	15	0;0	n	1.00	23	0.0	23	0;0	n	1.00	13	0.0	13	0;0	n	0.98	22	0.5	22	0;1	n	1.00	27	0.0	27	0;0	n	0.97	18	0.5	18	0;1	n	0.93	33	2.5	33	3;2	y	ENSMUSG00000018820.14	Zfyve27	chr19	protein_coding	zinc finger, FYVE domain containing 27
known_NIR_9676	chr19	42172628	42174244	+	42174079	42174244	5pMXE	ENSMUST00000170184.2	known	1.00	15	0	15	0	n	1.00	11	0	11	0	n	1.00	15	0	15	0	n	1.00	14	0	14	0	n	1.00	20	0	20	0	n	1.00	15	0	15	0	n	1.00	23	0	23	0	n	1.00	13	0	13	0	n	0.96	22	1	22	1	n	1.00	27	0	27	0	n	0.95	18	1	18	1	n	0.94	33	2	33	2	y	ENSMUSG00000018820.14	Zfyve27	chr19	protein_coding	zinc finger, FYVE domain containing 27
known_NIR_9677	chr19	4242270	4242749	+	4242270	4242744	A3SS	ENSMUST00000046094.6	known	0.00	0	389	0	389	n	0.00	0	308	0	308	n	0.00	0	403	0	403	n	0.00	0	421	0	421	n	0.02	12	536	12	536	y	0.00	0	286	0	286	n	0.02	11	564	11	564	y	0.03	7	264	7	264	y	0.01	4	300	4	300	y	0.03	17	524	17	524	y	0.03	11	391	11	391	y	0.01	5	389	5	389	y	ENSMUSG00000040385.8	Ppp1ca	chr19	protein_coding	protein phosphatase 1 catalytic subunit alpha
known_NIR_9678	chr19	42507296	42550991	+	42507296	42564465	A3SS	ENSMUST00000160107.2	known	1.00	7	0	7	0	n	0.60	3	2	3	2	n	0.94	17	1	17	1	n	1.00	5	0	5	0	n	0.93	13	1	13	1	n	1.00	3	0	3	0	n	1.00	15	0	15	0	n	0.70	7	3	7	3	y	1.00	1	0	1	0	n	1.00	9	0	9	0	n	1.00	7	0	7	0	n	1.00	4	0	4	0	n	ENSMUSG00000025184.11	R3hcc1l	chr19	protein_coding	R3H domain and coiled-coil containing 1 like
known_NIR_9679	chr19	42507296	42564465	+	42507296;42552780	42550991;42564465	ES	ENSMUST00000026188.10	known	0.00	0	11.5	0	7;16	n	0.10	2	17.5	2	3;32	y	0.03	1	30.5	1	17;44	n	0.00	0	20.5	0	5;36	n	0.04	1	24.5	1	13;36	n	0.00	0	12.0	0	3;21	n	0.00	0	29.0	0	15;43	n	0.15	3	16.5	3	7;26	y	0.00	0	13.0	0	1;25	n	0.00	0	25.0	0	9;41	n	0.00	0	15.5	0	7;24	n	0.00	0	21.5	0	4;39	n	ENSMUSG00000025184.11	R3hcc1l	chr19	protein_coding	R3H domain and coiled-coil containing 1 like
known_NIR_9680	chr19	42552780	42564465	+	42507296	42564465	A5SS	ENSMUST00000160107.2	known	1.00	16	0	16	0	n	0.94	32	2	32	2	y	0.98	44	1	44	1	n	1.00	36	0	36	0	n	0.97	36	1	36	1	n	1.00	21	0	21	0	n	1.00	43	0	43	0	n	0.90	26	3	26	3	y	1.00	25	0	25	0	n	1.00	41	0	41	0	n	1.00	24	0	24	0	n	1.00	39	0	39	0	n	ENSMUSG00000025184.11	R3hcc1l	chr19	protein_coding	R3H domain and coiled-coil containing 1 like
known_NIR_9681	chr19	42747746	42748145	-	42746345	42748145	A3SS	ENSMUST00000162004.8	known	0.00	0	14	0	14	n	0.21	3	11	3	11	y	0.33	4	8	4	8	y	0.00	0	16	0	16	n	0.08	2	22	2	22	y	0.00	0	18	0	18	n	0.10	3	28	3	28	y	0.25	3	9	3	9	y	0.05	1	21	1	21	n	0.22	5	18	5	18	y	0.00	0	20	0	20	n	0.00	0	12	0	12	n	ENSMUSG00000025188.16	Hps1	chr19	protein_coding	HPS1, biogenesis of lysosomal organelles complex 3 subunit 1
known_NIR_9682	chr19	42754655	42755125	-	42754655	42755149	A5SS	ENSMUST00000162004.8	known	0.33	2	4	2	4	n	0.42	5	7	5	7	y	0.14	1	6	1	6	n	0.30	3	7	3	7	y	0.50	4	4	4	4	n	0.40	6	9	6	9	y	0.18	3	14	3	14	y	0.50	3	3	3	3	n	0.25	3	9	3	9	y	0.38	6	10	6	10	y	0.00	0	5	0	5	n	0.15	2	11	2	11	y	ENSMUSG00000025188.16	Hps1	chr19	protein_coding	HPS1, biogenesis of lysosomal organelles complex 3 subunit 1
known_NIR_9683	chr19	4314012	4314342	-	4314136	4314342	A3SS	ENSMUST00000037992.16	known	0.04	1	25	1	25	n	0.00	0	33	0	33	n	0.11	5	39	5	39	y	0.02	1	41	1	41	n	0.05	3	53	3	53	y	0.04	1	22	1	22	n	0.00	0	48	0	48	n	0.06	1	17	1	17	n	0.00	0	24	0	24	n	0.00	0	38	0	38	n	0.00	0	41	0	41	n	0.00	0	43	0	43	n	ENSMUSG00000034616.18	Ssh3	chr19	protein_coding	slingshot protein phosphatase 3
known_NIR_9684	chr19	4315743	4315838	-	4315731	4315838	A3SS	ENSMUST00000037992.16	known	0.04	1	27	1	27	n	0.00	0	16	0	16	n	0.06	2	34	2	34	y	0.03	1	29	1	29	n	0.00	0	54	0	54	n	0.00	0	18	0	18	n	0.05	2	37	2	37	y	0.00	0	28	0	28	n	0.07	2	27	2	27	y	0.00	0	34	0	34	n	0.04	1	25	1	25	n	0.15	5	28	5	28	y	ENSMUSG00000034616.18	Ssh3	chr19	protein_coding	slingshot protein phosphatase 3
known_NIR_9685	chr19	4316665	4318573	-	4316665	4317775	A5SS	ENSMUST00000235815.2	known	0.14	2	12	2	12	y	0.00	0	10	0	10	n	0.08	2	24	2	24	y	0.00	0	33	0	33	n	0.00	0	32	0	32	n	0.00	0	9	0	9	n	0.00	0	21	0	21	n	0.00	0	13	0	13	n	0.00	0	27	0	27	n	0.08	1	12	1	12	n	0.08	1	12	1	12	n	0.05	1	18	1	18	n	ENSMUSG00000034616.18	Ssh3	chr19	protein_coding	slingshot protein phosphatase 3
known_NIR_9686	chr19	4316665	4318573	-	4316665;4318006	4317775;4318573	ES	ENSMUST00000037992.16	known	0.15	2	11.0	2	12;10	y	0.00	0	12.0	0	10;14	n	0.06	2	29.5	2	24;35	y	0.00	0	26.0	0	33;19	n	0.00	0	29.0	0	32;26	n	0.00	0	9.0	0	9;9	n	0.00	0	21.0	0	21;21	n	0.00	0	14.5	0	13;16	n	0.00	0	19.5	0	27;12	n	0.06	1	16.0	1	12;20	n	0.07	1	12.5	1	12;13	n	0.04	1	22.0	1	18;26	n	ENSMUSG00000034616.18	Ssh3	chr19	protein_coding	slingshot protein phosphatase 3
known_NIR_9687	chr19	4318002	4318573	-	4318006	4318573	A3SS	ENSMUST00000037992.16	known	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	35	0	35	n	0.00	0	19	0	19	n	0.00	0	26	0	26	n	0.18	2	9	2	9	y	0.05	1	21	1	21	n	0.00	0	16	0	16	n	0.00	0	12	0	12	n	0.00	0	20	0	20	n	0.24	4	13	4	13	y	0.00	0	26	0	26	n	ENSMUSG00000034616.18	Ssh3	chr19	protein_coding	slingshot protein phosphatase 3
known_NIR_9688	chr19	4318610	4319043	-	4318613	4319043	A3SS	ENSMUST00000037992.16	known	0.23	5	17	5	17	y	0.35	6	11	6	11	y	0.43	19	25	19	25	y	0.29	6	15	6	15	y	0.52	16	15	16	15	y	0.25	2	6	2	6	n	0.41	15	22	15	22	y	0.38	9	15	9	15	y	0.43	6	8	6	8	y	0.25	6	18	6	18	y	0.33	5	10	5	10	y	0.39	12	19	12	19	y	ENSMUSG00000034616.18	Ssh3	chr19	protein_coding	slingshot protein phosphatase 3
known_NIR_9689	chr19	4338013	4338620	-	4338013;4338535	4338440;4338620	ES	ENSMUST00000025791.12	known	0.00	0	74.0	0	68;80	n	0.00	0	77.0	0	69;85	n	0.01	1	122.5	1	114;131	n	0.02	1	60.5	1	57;64	n	0.00	0	86.5	0	76;97	n	0.00	0	40.0	0	35;45	n	0.01	1	80.5	1	80;81	n	0.05	2	41.5	2	41;42	y	0.00	0	43.5	0	38;49	n	0.01	1	76.5	1	62;91	n	0.00	0	67.5	0	59;76	n	0.00	0	75.5	0	81;70	n	ENSMUSG00000024858.15	Grk2	chr19	protein_coding	G protein-coupled receptor kinase 2
known_NIR_9690	chr19	4338013	4338620	-	4338535	4338620	3pMXE	ENSMUST00000168594.8	known	0.00	0	80	0	80	n	0.00	0	85	0	85	n	0.01	1	131	1	131	n	0.02	1	64	1	64	n	0.00	0	97	0	97	n	0.00	0	45	0	45	n	0.01	1	81	1	81	n	0.05	2	42	2	42	y	0.00	0	49	0	49	n	0.01	1	91	1	91	n	0.00	0	76	0	76	n	0.00	0	70	0	70	n	ENSMUSG00000024858.15	Grk2	chr19	protein_coding	G protein-coupled receptor kinase 2
known_NIR_9691	chr19	43493126	43495361	-	43493126;43493365	43493215;43495361	ES	ENSMUST00000026196.14	known	0.01	4	616.5	4	655;578	y	0.02	6	274.0	6	297;251	y	0.00	6	1278.0	6	1241;1315	y	0.01	4	456.5	4	457;456	y	0.00	2	402.0	2	404;400	y	0.00	2	520.0	2	534;506	y	0.00	0	578.5	0	606;551	n	0.00	1	329.5	1	334;325	n	0.01	5	445.0	5	462;428	y	0.01	7	463.5	7	492;435	y	0.00	1	307.0	1	298;316	n	0.01	9	997.5	9	1026;969	y	ENSMUSG00000025190.14	Got1	chr19	protein_coding	glutamic-oxaloacetic transaminase 1, soluble
known_NIR_9692	chr19	43501082	43504120	-	43496432	43504120	A3SS	ENSMUST00000026196.14	known	0.02	6	387	6	387	y	0.01	2	168	2	168	y	0.01	12	956	12	956	y	0.01	5	342	5	342	y	0.00	1	268	1	268	n	0.02	7	364	7	364	y	0.01	4	355	4	355	y	0.00	0	236	0	236	n	0.02	7	345	7	345	y	0.01	3	287	3	287	y	0.01	1	181	1	181	n	0.02	11	667	11	667	y	ENSMUSG00000025190.14	Got1	chr19	protein_coding	glutamic-oxaloacetic transaminase 1, soluble
known_NIR_9693	chr19	4371084	4372411	-	4371084	4372415	A5SS	ENSMUST00000047898.14	known	0.00	0	37	0	37	n	0.00	0	30	0	30	n	0.03	2	59	2	59	y	0.02	1	49	1	49	n	0.00	0	62	0	62	n	0.00	0	18	0	18	n	0.00	0	46	0	46	n	0.00	0	42	0	42	n	0.04	1	27	1	27	n	0.00	0	69	0	69	n	0.03	1	34	1	34	n	0.00	0	37	0	37	n	ENSMUSG00000054611.18	Kdm2a	chr19	protein_coding	lysine (K)-specific demethylase 2A
known_NIR_9694	chr19	4372578	4374814	-	4372578	4374365	A5SS	ENSMUST00000047898.14	known	0.02	1	42	1	42	n	0.00	0	31	0	31	n	0.00	0	76	0	76	n	0.00	0	60	0	60	n	0.00	0	67	0	67	n	0.00	0	31	0	31	n	0.00	0	51	0	51	n	0.00	0	34	0	34	n	0.00	0	46	0	46	n	0.00	0	51	0	51	n	0.07	2	28	2	28	y	0.04	2	52	2	52	y	ENSMUSG00000054611.18	Kdm2a	chr19	protein_coding	lysine (K)-specific demethylase 2A
known_NIR_9695	chr19	43749163	43751312	+	43749163	43751342	A3SS	ENSMUST00000026199.14	known	1.00	19	0	19	0	n	0.89	40	5	40	5	y	0.93	28	2	28	2	y	0.83	35	7	35	7	y	1.00	33	0	33	0	n	1.00	11	0	11	0	n	0.91	52	5	52	5	y	0.87	20	3	20	3	y	0.73	22	8	22	8	y	0.87	45	7	45	7	y	0.83	34	7	34	7	y	0.84	43	8	43	8	y	ENSMUSG00000025193.15	Cutc	chr19	protein_coding	cutC copper transporter
known_NIR_9696	chr19	4381297	4382469	-	4381297	4392875	A5SS	ENSMUST00000047898.14	known	0.00	0	18	0	18	n	0.00	0	16	0	16	n	0.00	0	37	0	37	n	0.00	0	26	0	26	n	0.00	0	39	0	39	n	0.00	0	17	0	17	n	0.08	2	22	2	22	y	0.00	0	15	0	15	n	0.00	0	17	0	17	n	0.00	0	20	0	20	n	0.00	0	11	0	11	n	0.00	0	29	0	29	n	ENSMUSG00000054611.18	Kdm2a	chr19	protein_coding	lysine (K)-specific demethylase 2A
known_NIR_9697	chr19	4381297	4383671	-	4381297	4392875	A5SS	ENSMUST00000047898.14	known	0.31	8	18	8	18	y	0.20	4	16	4	16	y	0.16	7	37	7	37	y	0.35	14	26	14	26	y	0.28	15	39	15	39	y	0.19	4	17	4	17	y	0.24	7	22	7	22	y	0.32	7	15	7	15	y	0.37	10	17	10	17	y	0.33	10	20	10	20	y	0.35	6	11	6	11	y	0.17	6	29	6	29	y	ENSMUSG00000054611.18	Kdm2a	chr19	protein_coding	lysine (K)-specific demethylase 2A
known_NIR_9698	chr19	4381297;4382513	4382469;4383671	-	4381297	4383671	cassetteExon	ENSMUST00000176653.2	known	0.00	0.0	8	0;0	8	n	0.00	0.0	4	0;0	4	n	0.00	0.0	7	0;0	7	n	0.00	0.0	14	0;0	14	n	0.00	0.0	15	0;0	15	n	0.00	0.0	4	0;0	4	n	0.22	2.0	7	2;2	7	y	0.00	0.0	7	0;0	7	n	0.00	0.0	10	0;0	10	n	0.05	0.5	10	0;1	10	n	0.00	0.0	6	0;0	6	n	0.00	0.0	6	0;0	6	n	ENSMUSG00000054611.18	Kdm2a	chr19	protein_coding	lysine (K)-specific demethylase 2A
known_NIR_9699	chr19	43863459	43877749	-	43863459	43868052	5pMXE	ENSMUST00000212592.2	known	1.00	17	0	17	0	n	1.00	11	0	11	0	n	1.00	14	0	14	0	n	1.00	22	0	22	0	n	1.00	30	0	30	0	n	1.00	8	0	8	0	n	1.00	32	0	32	0	n	1.00	22	0	22	0	n	1.00	15	0	15	0	n	1.00	24	0	24	0	n	1.00	20	0	20	0	n	0.93	28	2	28	2	y	ENSMUSG00000025195.10	Dnmbp	chr19	protein_coding	dynamin binding protein
known_NIR_9700	chr19	43863459	43877749	-	43863459	43889509	A5SS	ENSMUST00000212396.2	known	0.74	17	6	17	6	y	0.79	11	3	11	3	y	0.61	14	9	14	9	y	0.73	22	8	22	8	y	0.88	30	4	30	4	y	0.62	8	5	8	5	y	0.80	32	8	32	8	y	0.76	22	7	22	7	y	0.79	15	4	15	4	y	0.75	24	8	24	8	y	0.77	20	6	20	6	y	0.97	28	1	28	1	n	ENSMUSG00000025195.10	Dnmbp	chr19	protein_coding	dynamin binding protein
known_NIR_9701	chr19	4400333	4401765	-	4400358	4401765	A3SS	ENSMUST00000047898.14	known	0.05	2	35	2	35	y	0.21	3	11	3	11	y	0.03	2	57	2	57	y	0.11	5	40	5	40	y	0.03	2	63	2	63	y	0.00	0	25	0	25	n	0.00	0	32	0	32	n	0.11	4	31	4	31	y	0.12	3	21	3	21	y	0.08	4	44	4	44	y	0.06	2	32	2	32	y	0.17	7	33	7	33	y	ENSMUSG00000054611.18	Kdm2a	chr19	protein_coding	lysine (K)-specific demethylase 2A
known_NIR_9702	chr19	44057834	44058038	-	44057834	44058028	A5SS	ENSMUST00000071698.13	known	0.00	0	16	0	16	n	0.00	0	5	0	5	n	0.04	1	27	1	27	n	0.00	0	18	0	18	n	0.04	1	22	1	22	n	0.00	0	15	0	15	n	0.07	1	14	1	14	n	0.00	0	21	0	21	n	0.10	2	18	2	18	y	0.00	0	24	0	24	n	0.00	0	13	0	13	n	0.12	3	21	3	21	y	ENSMUSG00000025198.17	Erlin1	chr19	protein_coding	ER lipid raft associated 1
known_NIR_9703	chr19	44057834	44058038	-	44057834	44058130	A5SS	ENSMUST00000112028.10	known	0.00	0	17	0	17	n	0.00	0	13	0	13	n	0.03	1	34	1	34	n	0.00	0	15	0	15	n	0.02	1	41	1	41	n	0.00	0	18	0	18	n	0.06	1	17	1	17	n	0.00	0	27	0	27	n	0.09	2	20	2	20	y	0.00	0	24	0	24	n	0.00	0	13	0	13	n	0.10	3	28	3	28	y	ENSMUSG00000025198.17	Erlin1	chr19	protein_coding	ER lipid raft associated 1
known_NIR_9704	chr19	44057834	44058130	-	44057834	44058028	A5SS	ENSMUST00000071698.13	known	0.52	17	16	17	16	y	0.72	13	5	13	5	y	0.56	34	27	34	27	y	0.45	15	18	15	18	y	0.65	41	22	41	22	y	0.55	18	15	18	15	y	0.55	17	14	17	14	y	0.56	27	21	27	21	y	0.53	20	18	20	18	y	0.50	24	24	24	24	y	0.50	13	13	13	13	y	0.57	28	21	28	21	y	ENSMUSG00000025198.17	Erlin1	chr19	protein_coding	ER lipid raft associated 1
known_NIR_9705	chr19	44063969	44065702	-	44063969	44065685	A5SS	ENSMUST00000026217.11	known	0.43	88	119	88	119	y	0.38	68	113	68	113	y	0.39	119	184	119	184	y	0.42	104	144	104	144	y	0.44	109	140	109	140	y	0.39	53	83	53	83	y	0.45	135	162	135	162	y	0.31	45	101	45	101	y	0.45	92	111	92	111	y	0.42	151	212	151	212	y	0.43	117	152	117	152	y	0.43	127	167	127	167	y	ENSMUSG00000025199.17	Chuk	chr19	protein_coding	conserved helix-loop-helix ubiquitous kinase
known_NIR_9706	chr19	44110399	44110599	-	44110399	44111583	A5SS	ENSMUST00000026218.7	known	0.16	3	16	3	16	y	0.00	0	20	0	20	n	0.03	1	30	1	30	n	0.18	6	27	6	27	y	0.11	4	32	4	32	y	0.00	0	10	0	10	n	0.29	6	15	6	15	y	0.08	1	11	1	11	n	0.31	9	20	9	20	y	0.19	8	34	8	34	y	0.31	5	11	5	11	y	0.25	8	24	8	24	y	ENSMUSG00000025200.8	Cwf19l1	chr19	protein_coding	CWF19-like 1, cell cycle control (S. pombe)
known_NIR_9707	chr19	44113331	44115856	-	44113331	44115805	A5SS	ENSMUST00000026218.7	known	0.00	0	19	0	19	n	0.18	3	14	3	14	y	0.36	4	7	4	7	y	0.00	0	25	0	25	n	0.00	0	18	0	18	n	-	-	-	-	-	-	0.00	0	19	0	19	n	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.06	1	17	1	17	n	0.06	1	15	1	15	n	0.00	0	16	0	16	n	ENSMUSG00000025200.8	Cwf19l1	chr19	protein_coding	CWF19-like 1, cell cycle control (S. pombe)
known_NIR_9708	chr19	44115923	44117665	-	44115923	44117637	A5SS	ENSMUST00000026218.7	known	0.05	1	20	1	20	n	0.19	3	13	3	13	y	0.24	4	13	4	13	y	0.00	0	19	0	19	n	0.26	8	23	8	23	y	0.38	3	5	3	5	n	0.17	3	15	3	15	y	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.12	3	23	3	23	y	0.29	6	15	6	15	y	0.26	5	14	5	14	y	ENSMUSG00000025200.8	Cwf19l1	chr19	protein_coding	CWF19-like 1, cell cycle control (S. pombe)
known_NIR_9709	chr19	44120587	44121439	-	44120603	44121439	A3SS	ENSMUST00000026218.7	known	0.29	5	12	5	12	y	0.32	8	17	8	17	y	0.18	2	9	2	9	y	0.12	2	15	2	15	y	0.27	11	30	11	30	y	0.00	0	13	0	13	n	0.06	2	31	2	31	y	0.57	8	6	8	6	y	0.12	2	14	2	14	y	0.12	4	29	4	29	y	0.28	5	13	5	13	y	0.08	2	22	2	22	y	ENSMUSG00000025200.8	Cwf19l1	chr19	protein_coding	CWF19-like 1, cell cycle control (S. pombe)
known_NIR_9710	chr19	44121523	44121721	-	44121523	44124205	A5SS	ENSMUST00000026218.7	known	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.08	1	12	1	12	n	0.07	2	25	2	25	y	0.22	4	14	4	14	y	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.00	0	20	0	20	n	0.08	1	12	1	12	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	ENSMUSG00000025200.8	Cwf19l1	chr19	protein_coding	CWF19-like 1, cell cycle control (S. pombe)
known_NIR_9711	chr19	44121523	44121895	-	44121523	44124205	A5SS	ENSMUST00000026218.7	known	0.22	2	7	2	7	n	0.00	0	8	0	8	n	0.08	1	12	1	12	n	0.04	1	25	1	25	n	0.12	2	14	2	14	y	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.14	1	6	1	6	n	0.17	4	20	4	20	y	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	ENSMUSG00000025200.8	Cwf19l1	chr19	protein_coding	CWF19-like 1, cell cycle control (S. pombe)
known_NIR_9712	chr19	44130466	44130563	-	44128152	44130563	A3SS	ENSMUST00000237630.2	known	0.00	0	76	0	76	n	0.07	5	68	5	68	y	0.10	5	44	5	44	y	0.00	0	65	0	65	n	0.06	4	61	4	61	y	0.03	1	34	1	34	n	0.00	0	85	0	85	n	0.00	0	40	0	40	n	0.08	6	72	6	72	y	0.02	2	102	2	102	y	0.05	5	93	5	93	y	0.00	0	73	0	73	n	ENSMUSG00000057506.6	Bloc1s2	chr19	protein_coding	biogenesis of lysosomal organelles complex-1, subunit 2
known_NIR_9713	chr19	4439085	4444820	-	4412942	4444820	A3SS	ENSMUST00000047898.14	known	0.08	2	22	2	22	y	0.00	0	16	0	16	n	0.05	2	38	2	38	y	0.09	3	32	3	32	y	0.08	4	44	4	44	y	0.15	3	17	3	17	y	0.00	0	26	0	26	n	0.00	0	27	0	27	n	0.23	5	17	5	17	y	0.19	5	22	5	22	y	0.08	1	11	1	11	n	0.08	2	24	2	24	y	ENSMUSG00000054611.18	Kdm2a	chr19	protein_coding	lysine (K)-specific demethylase 2A
known_NIR_9714	chr19	4444920	4446339	-	4444920	4447962	A5SS	ENSMUST00000047898.14	known	1.00	12	0	12	0	n	0.82	9	2	9	2	y	0.93	37	3	37	3	y	0.83	30	6	30	6	y	0.88	30	4	30	4	y	0.89	17	2	17	2	y	0.75	15	5	15	5	y	0.75	18	6	18	6	y	1.00	9	0	9	0	n	0.67	14	7	14	7	y	0.69	9	4	9	4	y	0.89	17	2	17	2	y	ENSMUSG00000054611.18	Kdm2a	chr19	protein_coding	lysine (K)-specific demethylase 2A
known_NIR_9715	chr19	44507103	44507340	-	44507103	44508862	A5SS	ENSMUST00000165758.2	known	0.89	8	1	8	1	n	0.33	1	2	1	2	n	0.78	7	2	7	2	n	1.00	8	0	8	0	n	0.86	12	2	12	2	y	1.00	9	0	9	0	n	1.00	10	0	10	0	n	1.00	5	0	5	0	n	1.00	7	0	7	0	n	0.95	18	1	18	1	n	1.00	17	0	17	0	n	1.00	11	0	11	0	n	ENSMUSG00000051984.14	Sec31b	chr19	protein_coding	Sec31 homolog B (S. cerevisiae)
known_NIR_9716	chr19	44507926	44508862	-	44507103	44508862	A3SS	ENSMUST00000165758.2	known	0.75	3	1	3	1	n	0.33	1	2	1	2	n	0.83	10	2	10	2	y	1.00	1	0	1	0	n	0.50	2	2	2	2	n	1.00	5	0	5	0	n	1.00	9	0	9	0	n	1.00	7	0	7	0	n	1.00	1	0	1	0	n	0.86	6	1	6	1	n	1.00	4	0	4	0	n	1.00	7	0	7	0	n	ENSMUSG00000051984.14	Sec31b	chr19	protein_coding	Sec31 homolog B (S. cerevisiae)
known_NIR_9717	chr19	44524692	44532140	-	44524692;44531828	44531705;44532140	ES	ENSMUST00000063632.14	known	0.17	1	5.0	1	7;3	n	0.17	1	5.0	1	3;7	n	0.13	1	6.5	1	2;11	n	0.00	0	7.5	0	6;9	n	0.15	1	5.5	1	4;7	n	0.00	0	2.5	0	0;5	n	0.00	0	2.0	0	2;2	n	0.29	1	2.5	1	2;3	n	0.20	1	4.0	1	4;4	n	0.12	1	7.0	1	5;9	n	0.40	2	3.0	2	1;5	n	0.29	2	5.0	2	3;7	y	ENSMUSG00000051984.14	Sec31b	chr19	protein_coding	Sec31 homolog B (S. cerevisiae)
known_NIR_9718	chr19	44538851	44541137	-	44538659	44541137	A3SS	ENSMUST00000171415.8	known	0.96	459	21	459	21	y	0.97	549	17	549	17	y	0.97	478	14	478	14	y	0.98	420	8	420	8	y	0.97	498	18	498	18	y	0.96	257	12	257	12	y	0.97	727	19	727	19	y	0.98	303	5	303	5	y	0.95	455	23	455	23	y	0.97	772	26	772	26	y	0.97	691	19	691	19	y	0.96	666	27	666	27	y	ENSMUSG00000025204.11	Ndufb8	chr19	protein_coding	NADH:ubiquinone oxidoreductase subunit B8
known_NIR_9719	chr19	44543453	44543756	-	44543496	44543756	A3SS	ENSMUST00000171415.8	known	0.01	7	479	7	479	y	0.02	9	372	9	372	y	0.02	8	380	8	380	y	0.01	5	474	5	474	y	0.02	12	498	12	498	y	0.01	2	232	2	232	y	0.02	12	613	12	613	y	0.00	0	236	0	236	n	0.01	3	400	3	400	y	0.02	15	699	15	699	y	0.03	17	576	17	576	y	0.03	18	585	18	585	y	ENSMUSG00000025204.11	Ndufb8	chr19	protein_coding	NADH:ubiquinone oxidoreductase subunit B8
known_NIR_9720	chr19	44543496	44543666	-	44543496	44543756	A5SS	ENSMUST00000171415.8	known	0.01	3	479	3	479	y	0.00	0	372	0	372	n	0.01	3	380	3	380	y	0.00	1	474	1	474	n	0.00	0	498	0	498	n	0.00	0	232	0	232	n	0.00	0	613	0	613	n	0.00	0	236	0	236	n	0.00	1	400	1	400	n	0.01	6	699	6	699	y	0.00	2	576	2	576	y	0.00	1	585	1	585	n	ENSMUSG00000025204.11	Ndufb8	chr19	protein_coding	NADH:ubiquinone oxidoreductase subunit B8
known_NIR_9721	chr19	4476284	4476505	-	4476284	4476608	A5SS	ENSMUST00000235680.2	known	0.17	1	5	1	5	n	0.62	5	3	5	3	n	0.85	11	2	11	2	y	1.00	1	0	1	0	n	0.91	10	1	10	1	n	1.00	1	0	1	0	n	0.78	7	2	7	2	n	0.40	2	3	2	3	n	1.00	4	0	4	0	n	0.60	6	4	6	4	y	1.00	7	0	7	0	n	1.00	5	0	5	0	n	ENSMUSG00000041845.12	Rhod	chr19	protein_coding	ras homolog family member D
known_NIR_9722	chr19	4476284	4476505	-	4476284	4476655	A5SS	ENSMUST00000048197.10	known	0.02	1	52	1	52	n	0.06	5	80	5	80	y	0.12	11	82	11	82	y	0.01	1	103	1	103	n	0.07	10	127	10	127	y	0.01	1	69	1	69	n	0.06	7	106	7	106	y	0.02	2	88	2	88	y	0.04	4	86	4	86	y	0.05	6	120	6	120	y	0.06	7	106	7	106	y	0.06	5	82	5	82	y	ENSMUSG00000041845.12	Rhod	chr19	protein_coding	ras homolog family member D
known_NIR_9723	chr19	4476284	4476608	-	4476284	4476655	A5SS	ENSMUST00000048197.10	known	0.09	5	52	5	52	y	0.04	3	80	3	80	y	0.02	2	82	2	82	y	0.00	0	103	0	103	n	0.01	1	127	1	127	n	0.00	0	69	0	69	n	0.02	2	106	2	106	y	0.03	3	88	3	88	y	0.00	0	86	0	86	n	0.03	4	120	4	120	y	0.00	0	106	0	106	n	0.00	0	82	0	82	n	ENSMUSG00000041845.12	Rhod	chr19	protein_coding	ras homolog family member D
known_NIR_9724	chr19	4497454	4497553	+	4493816	4497553	A5SS	ENSMUST00000235289.2	known	1.00	6	0	6	0	n	1.00	2	0	2	0	n	1.00	3	0	3	0	n	0.75	3	1	3	1	n	0.85	11	2	11	2	y	1.00	2	0	2	0	n	1.00	5	0	5	0	n	1.00	1	0	1	0	n	1.00	7	0	7	0	n	0.89	8	1	8	1	n	1.00	5	0	5	0	n	1.00	7	0	7	0	n	ENSMUSG00000087132.9	A930001C03Rik	chr19	lncRNA	RIKEN cDNA A930001C03 gene
known_NIR_9725	chr19	44977796;44979797	44979612;44980577	+	44977796	44980577	cassetteExon	ENSMUST00000026225.15	known	0.22	54.5	195	22;87	195	y	0.26	46.0	134	33;59	134	y	0.16	13.5	72	6;21	72	y	0.18	61.0	287	44;78	287	y	0.21	84.5	323	63;106	323	y	0.22	18.0	64	16;20	64	y	0.18	49.0	220	37;61	220	y	0.22	33.0	120	20;46	120	y	0.19	50.5	211	31;70	211	y	0.21	78.5	299	56;101	299	y	0.18	45.0	205	29;61	205	y	0.22	78.5	280	46;111	280	y	ENSMUSG00000025207.17	Sema4g	chr19	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
known_NIR_9726	chr19	44978118	44980577	+	44977796	44980577	A5SS	ENSMUST00000026225.15	known	0.01	2	195	2	195	y	0.00	0	134	0	134	n	0.00	0	72	0	72	n	0.01	2	287	2	287	y	0.00	1	323	1	323	n	0.02	1	64	1	64	n	0.00	0	220	0	220	n	0.00	0	120	0	120	n	0.01	2	211	2	211	y	0.01	4	299	4	299	y	0.02	4	205	4	205	y	0.02	7	280	7	280	y	ENSMUSG00000025207.17	Sema4g	chr19	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
known_NIR_9727	chr19	44978118	44980577	+	44979797	44980577	A5SS&ES	ENSMUST00000236662.2	known	0.02	2	87	2	87	y	0.00	0	59	0	59	n	0.00	0	21	0	21	n	0.03	2	78	2	78	y	0.01	1	106	1	106	n	0.05	1	20	1	20	n	0.00	0	61	0	61	n	0.00	0	46	0	46	n	0.03	2	70	2	70	y	0.04	4	101	4	101	y	0.06	4	61	4	61	y	0.06	7	111	7	111	y	ENSMUSG00000025207.17	Sema4g	chr19	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
known_NIR_9728	chr19	44996814	44997719	+	44994626	44997719	A5SS	ENSMUST00000236685.2	known	0.86	24	4	24	4	y	0.83	20	4	20	4	y	0.83	40	8	40	8	y	0.91	31	3	31	3	y	0.96	44	2	44	2	y	0.95	20	1	20	1	n	0.90	44	5	44	5	y	0.87	27	4	27	4	y	0.97	31	1	31	1	n	0.78	43	12	43	12	y	0.83	19	4	19	4	y	0.92	46	4	46	4	y	ENSMUSG00000025209.6	Twnk	chr19	protein_coding	twinkle mtDNA helicase
known_NIR_9729	chr19	45352325	45394984	+	45352325	45444972	A3SS	ENSMUST00000111936.4	known	0.40	2	3	2	3	n	0.40	2	3	2	3	n	0.25	2	6	2	6	n	0.78	7	2	7	2	n	0.17	2	10	2	10	y	0.50	1	1	1	1	n	0.25	1	3	1	3	n	0.67	4	2	4	2	n	0.33	1	2	1	2	n	0.57	8	6	8	6	y	0.75	3	1	3	1	n	0.50	4	4	4	4	n	ENSMUSG00000025217.16	Btrc	chr19	protein_coding	beta-transducin repeat containing protein
known_NIR_9730	chr19	45352325	45444972	+	45352325;45411679	45411572;45444972	ES	ENSMUST00000065601.13	known	0.21	3	11.0	3	8;14	y	0.35	3	5.5	3	7;4	y	0.44	6	7.5	6	9;6	y	0.15	2	11.5	2	10;13	y	0.47	10	11.5	10	12;11	y	0.11	1	8.0	1	10;6	n	0.21	3	11.5	3	15;8	y	0.14	2	12.0	2	9;15	y	0.36	2	3.5	2	3;4	n	0.31	6	13.5	6	8;19	y	0.12	1	7.5	1	4;11	n	0.26	4	11.5	4	9;14	y	ENSMUSG00000025217.16	Btrc	chr19	protein_coding	beta-transducin repeat containing protein
known_NIR_9731	chr19	45352325;45395025	45394984;45411572	+	45352325	45411572	cassetteExon	ENSMUST00000065601.13	known	0.24	2.5	8	2;3	8	y	0.26	2.5	7	2;3	7	y	0.10	1.0	9	2;0	9	n	0.43	7.5	10	7;8	10	y	0.25	4.0	12	2;6	12	y	0.20	2.5	10	1;4	10	n	0.17	3.0	15	1;5	15	n	0.36	5.0	9	4;6	9	y	0.40	2.0	3	1;3	3	n	0.43	6.0	8	8;4	8	y	0.53	4.5	4	3;6	4	y	0.31	4.0	9	4;4	9	y	ENSMUSG00000025217.16	Btrc	chr19	protein_coding	beta-transducin repeat containing protein
known_NIR_9732	chr19	45549146;45549523	45549426;45553350	+	45549146	45553350	cassetteExon	ENSMUST00000047057.9	known	0.00	0.0	39	0;0	39	n	0.02	1.0	51	0;2	51	n	0.00	0.0	53	0;0	53	n	0.02	1.0	62	2;0	62	n	0.04	2.5	55	4;1	55	n	0.01	0.5	43	1;0	43	n	0.09	5.0	48	7;3	48	y	0.00	0.0	20	0;0	20	n	0.01	0.5	40	0;1	40	n	0.01	0.5	56	0;1	56	n	0.05	2.0	37	4;0	37	n	0.01	0.5	41	0;1	41	n	ENSMUSG00000041035.10	Gm17018	chr19	protein_coding	predicted gene 17018
known_NIR_9733	chr19	45563789	45565432	+	45560977	45565432	A5SS	ENSMUST00000047057.9	known	0.00	0	41	0	41	n	0.00	0	56	0	56	n	0.00	0	39	0	39	n	0.00	0	41	0	41	n	0.00	0	61	0	61	n	0.00	0	31	0	31	n	0.00	0	71	0	71	n	0.00	0	17	0	17	n	0.00	0	58	0	58	n	0.00	0	51	0	51	n	0.00	0	68	0	68	n	0.04	2	48	2	48	y	ENSMUSG00000041035.10	Gm17018	chr19	protein_coding	predicted gene 17018
known_NIR_9734	chr19	45567646	45568092	-	45567701	45568092	A3SS	ENSMUST00000160718.9	known	0.19	5	22	5	22	y	0.19	5	22	5	22	y	0.07	3	43	3	43	y	0.07	2	26	2	26	y	0.16	7	37	7	37	y	0.11	3	24	3	24	y	0.11	6	48	6	48	y	0.00	0	16	0	16	n	0.10	3	26	3	26	y	0.07	4	53	4	53	y	0.07	3	37	3	37	y	0.09	3	32	3	32	y	ENSMUSG00000040913.12	Fbxw4	chr19	protein_coding	F-box and WD-40 domain protein 4
known_NIR_9735	chr19	4565718	4580775	+	4565718	4651628	A3SS	ENSMUST00000068004.13	known	0.01	2	240	2	240	y	0.00	0	165	0	165	n	0.02	10	481	10	481	y	0.00	0	475	0	475	n	0.00	1	467	1	467	n	0.00	0	315	0	315	n	0.00	1	364	1	364	n	0.00	0	352	0	352	n	0.00	0	239	0	239	n	0.00	2	456	2	456	y	0.00	0	259	0	259	n	0.00	1	347	1	347	n	ENSMUSG00000024892.18	Pcx	chr19	protein_coding	pyruvate carboxylase
known_NIR_9736	chr19	4565718	4589908	+	4565718	4580775	3pMXE	ENSMUST00000223659.2	known	0.00	0	2	0	2	n	-	-	-	-	-	-	0.33	5	10	5	10	y	-	-	-	-	-	-	0.86	6	1	6	1	n	1.00	2	0	2	0	n	0.88	7	1	7	1	n	1.00	3	0	3	0	n	1.00	1	0	1	0	n	0.67	4	2	4	2	n	1.00	1	0	1	0	n	0.67	2	1	2	1	n	ENSMUSG00000024892.18	Pcx	chr19	protein_coding	pyruvate carboxylase
known_NIR_9737	chr19	4565718;4590115	4589908;4651628	+	4565718	4651628	cassetteExon	ENSMUST00000068004.13	known	0.00	0.5	240	0;1	240	n	0.01	1.5	165	0;3	165	n	0.01	3.0	481	5;1	481	n	0.00	0.5	475	0;1	475	n	0.01	5.5	467	6;5	467	y	0.00	1.0	315	2;0	315	n	0.01	4.0	364	7;1	364	n	0.01	2.0	352	3;1	352	n	0.01	1.5	239	1;2	239	n	0.01	4.5	456	4;5	456	y	0.00	1.0	259	1;1	259	n	0.00	1.0	347	2;0	347	n	ENSMUSG00000024892.18	Pcx	chr19	protein_coding	pyruvate carboxylase
known_NIR_9738	chr19	45749647	45753889	-	45749647	45750624	5pMXE	ENSMUST00000235508.2	known	0.11	4	33	4	33	y	0.16	6	32	6	32	y	0.05	5	106	5	106	y	0.15	8	47	8	47	y	0.07	5	62	5	62	y	0.25	9	27	9	27	y	0.19	11	48	11	48	y	0.06	2	31	2	31	y	0.05	3	53	3	53	y	0.11	10	78	10	78	y	0.13	6	40	6	40	y	0.15	13	72	13	72	y	ENSMUSG00000025220.9	Oga	chr19	protein_coding	O-GlcNAcase
known_NIR_9739	chr19	45749647	45753889	-	45749647;45750709	45750624;45753889	ES	ENSMUST00000026243.5	known	0.11	4	32.0	4	33;31	y	0.15	6	34.0	6	32;36	y	0.04	5	119.0	5	106;132	y	0.13	8	52.5	8	47;58	y	0.07	5	67.0	5	62;72	y	0.23	9	30.0	9	27;33	y	0.16	11	57.5	11	48;67	y	0.06	2	33.0	2	31;35	y	0.06	3	51.0	3	53;49	y	0.11	10	84.5	10	78;91	y	0.11	6	47.0	6	40;54	y	0.14	13	79.0	13	72;86	y	ENSMUSG00000025220.9	Oga	chr19	protein_coding	O-GlcNAcase
known_NIR_9740	chr19	45907245	45910056	-	45880587	45910056	A3SS	ENSMUST00000045396.9	known	0.00	0	18	0	18	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.13	3	20	3	20	y	0.14	1	6	1	6	n	0.00	0	22	0	22	n	0.00	0	14	0	14	n	0.23	3	10	3	10	y	0.00	0	21	0	21	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	ENSMUSG00000039901.11	Armh3	chr19	protein_coding	armadillo-like helical domain containing 3
known_NIR_9741	chr19	46021780	46022477	-	46021780	46022471	A5SS	ENSMUST00000156585.9	known	0.30	13	31	13	31	y	0.31	18	40	18	40	y	0.23	11	36	11	36	y	0.39	18	28	18	28	y	0.46	25	29	25	29	y	0.41	7	10	7	10	y	0.32	20	43	20	43	y	0.44	8	10	8	10	y	0.33	11	22	11	22	y	0.40	26	39	26	39	y	0.31	12	27	12	27	y	0.41	21	30	21	30	y	ENSMUSG00000025223.16	Ldb1	chr19	protein_coding	LIM domain binding 1
known_NIR_9742	chr19	46024804	46027494	-	46024804	46033269	A5SS	ENSMUST00000156585.9	known	0.08	3	35	3	35	y	0.07	3	37	3	37	y	0.11	5	41	5	41	y	0.07	3	42	3	42	y	0.16	9	46	9	46	y	0.00	0	28	0	28	n	0.29	10	25	10	25	y	0.16	3	16	3	16	y	0.06	2	34	2	34	y	0.10	4	36	4	36	y	0.10	4	35	4	35	y	0.07	3	37	3	37	y	ENSMUSG00000025223.16	Ldb1	chr19	protein_coding	LIM domain binding 1
known_NIR_9743	chr19	46050015	46050580	+	46050015	46050583	A3SS	ENSMUST00000134015.2	known	0.38	5	8	5	8	y	0.25	2	6	2	6	n	0.34	12	23	12	23	y	0.08	1	12	1	12	n	0.00	0	13	0	13	n	0.33	5	10	5	10	y	0.25	4	12	4	12	y	0.12	1	7	1	7	n	0.00	0	5	0	5	n	0.24	4	13	4	13	y	0.00	0	3	0	3	n	0.26	5	14	5	14	y	ENSMUSG00000055491.15	Pprc1	chr19	protein_coding	peroxisome proliferative activated receptor, gamma, coactivator-related 1
known_NIR_9744	chr19	46050933	46051051	+	46050942	46051051	A5SS	ENSMUST00000111899.8	known	0.38	3	5	3	5	n	0.44	4	5	4	5	n	0.16	6	31	6	31	y	0.29	4	10	4	10	y	0.23	5	17	5	17	y	0.18	2	9	2	9	y	0.50	7	7	7	7	y	0.33	5	10	5	10	y	0.20	1	4	1	4	n	0.25	5	15	5	15	y	0.44	4	5	4	5	n	0.00	0	9	0	9	n	ENSMUSG00000055491.15	Pprc1	chr19	protein_coding	peroxisome proliferative activated receptor, gamma, coactivator-related 1
known_NIR_9745	chr19	46055725	46056457	+	46055725	46056460	A3SS	ENSMUST00000111899.8	known	0.47	9	10	9	10	y	0.37	7	12	7	12	y	0.49	20	21	20	21	y	0.24	4	13	4	13	y	0.38	12	20	12	20	y	0.48	11	12	11	12	y	0.56	18	14	18	14	y	0.55	6	5	6	5	y	0.00	0	2	0	2	n	0.46	12	14	12	14	y	0.56	9	7	9	7	y	0.53	9	8	9	8	y	ENSMUSG00000055491.15	Pprc1	chr19	protein_coding	peroxisome proliferative activated receptor, gamma, coactivator-related 1
known_NIR_9746	chr19	46067197	46067297	+	46067197	46067312	A3SS	ENSMUST00000165017.2	known	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.30	3	7	3	7	y	0.00	0	8	0	8	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.14	1	6	1	6	n	0.20	1	4	1	4	n	ENSMUSG00000015176.12	Nolc1	chr19	protein_coding	nucleolar and coiled-body phosphoprotein 1
known_NIR_9747	chr19	46067197	46067315	+	46067197	46067297	A3SS	ENSMUST00000223741.2	known	1.00	28	0	28	0	n	1.00	13	0	13	0	n	1.00	50	0	50	0	n	1.00	26	0	26	0	n	0.94	50	3	50	3	y	1.00	35	0	35	0	n	1.00	28	0	28	0	n	1.00	40	0	40	0	n	1.00	21	0	21	0	n	1.00	27	0	27	0	n	0.96	24	1	24	1	n	0.97	29	1	29	1	n	ENSMUSG00000015176.12	Nolc1	chr19	protein_coding	nucleolar and coiled-body phosphoprotein 1
known_NIR_9748	chr19	46067197	46067315	+	46067197	46067312	A3SS	ENSMUST00000165017.2	known	0.90	28	3	28	3	y	0.72	13	5	13	5	y	0.83	50	10	50	10	y	0.81	26	6	26	6	y	0.88	50	7	50	7	y	0.81	35	8	35	8	y	0.85	28	5	28	5	y	1.00	40	0	40	0	n	0.88	21	3	21	3	y	0.90	27	3	27	3	y	0.80	24	6	24	6	y	0.88	29	4	29	4	y	ENSMUSG00000015176.12	Nolc1	chr19	protein_coding	nucleolar and coiled-body phosphoprotein 1
known_NIR_9749	chr19	46067697	46068350	+	46067697	46068347	A3SS	ENSMUST00000165017.2	known	0.46	16	19	16	19	y	0.66	19	10	19	10	y	0.63	39	23	39	23	y	0.45	9	11	9	11	y	0.60	47	31	47	31	y	0.49	21	22	21	22	y	0.45	13	16	13	16	y	0.64	16	9	16	9	y	0.40	8	12	8	12	y	0.49	25	26	25	26	y	0.32	9	19	9	19	y	0.23	9	30	9	30	y	ENSMUSG00000015176.12	Nolc1	chr19	protein_coding	nucleolar and coiled-body phosphoprotein 1
known_NIR_9750	chr19	46120612	46121563	+	46120706	46121563	A5SS	ENSMUST00000043739.6	known	0.97	113	4	113	4	y	0.94	46	3	46	3	y	0.95	84	4	84	4	y	1.00	80	0	80	0	n	0.99	144	1	144	1	n	0.98	236	5	236	5	y	0.96	223	9	223	9	y	1.00	56	0	56	0	n	0.94	163	11	163	11	y	0.94	184	12	184	12	y	0.90	66	7	66	7	y	0.98	98	2	98	2	y	ENSMUSG00000038754.6	Elovl3	chr19	protein_coding	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3
known_NIR_9751	chr19	46256555	46256859	+	46256555	46256830	A3SS	ENSMUST00000026254.14	known	0.06	2	32	2	32	y	0.03	1	30	1	30	n	0.06	4	61	4	61	y	0.00	0	30	0	30	n	0.01	1	68	1	68	n	0.07	4	52	4	52	y	0.04	2	55	2	55	y	0.06	2	33	2	33	y	0.00	0	21	0	21	n	0.00	0	62	0	62	n	0.07	3	38	3	38	y	0.00	0	40	0	40	n	ENSMUSG00000025224.17	Gbf1	chr19	protein_coding	golgi-specific brefeldin A-resistance factor 1
known_NIR_9752	chr19	46269170	46271474	+	46269182	46271474	A5SS	ENSMUST00000026254.14	known	0.57	63	47	63	47	y	0.59	52	36	52	36	y	0.55	77	62	77	62	y	0.63	63	37	63	37	y	0.58	85	61	85	61	y	0.63	53	31	53	31	y	0.64	78	43	78	43	y	0.64	55	31	55	31	y	0.71	42	17	42	17	y	0.80	86	22	86	22	y	0.57	47	36	47	36	y	0.62	48	29	48	29	y	ENSMUSG00000025224.17	Gbf1	chr19	protein_coding	golgi-specific brefeldin A-resistance factor 1
known_NIR_9753	chr19	46320058	46320196	-	46320079	46320196	A3SS	ENSMUST00000235977.2	known	0.72	13	5	13	5	y	0.80	16	4	16	4	y	0.61	11	7	11	7	y	0.88	21	3	21	3	y	0.71	12	5	12	5	y	0.50	4	4	4	4	n	0.83	25	5	25	5	y	0.67	8	4	8	4	y	0.80	16	4	16	4	y	0.52	13	12	13	12	y	0.72	21	8	21	8	y	0.53	17	15	17	15	y	ENSMUSG00000036748.17	Cuedc2	chr19	protein_coding	CUE domain containing 2
known_NIR_9754	chr19	46320058	46320196	-	46320112	46320196	A3SS	ENSMUST00000235485.2	known	0.30	13	30	13	30	y	0.36	16	29	16	29	y	0.30	11	26	11	26	y	0.54	21	18	21	18	y	0.21	12	46	12	46	y	0.19	4	17	4	17	y	0.32	25	53	25	53	y	0.21	8	31	8	31	y	0.47	16	18	16	18	y	0.22	13	46	13	46	y	0.41	21	30	21	30	y	0.25	17	50	17	50	y	ENSMUSG00000036748.17	Cuedc2	chr19	protein_coding	CUE domain containing 2
known_NIR_9755	chr19	46320079	46320196	-	46320112	46320196	A3SS	ENSMUST00000235485.2	known	0.14	5	30	5	30	y	0.12	4	29	4	29	y	0.21	7	26	7	26	y	0.14	3	18	3	18	y	0.10	5	46	5	46	y	0.19	4	17	4	17	y	0.09	5	53	5	53	y	0.11	4	31	4	31	y	0.18	4	18	4	18	y	0.21	12	46	12	46	y	0.21	8	30	8	30	y	0.23	15	50	15	50	y	ENSMUSG00000036748.17	Cuedc2	chr19	protein_coding	CUE domain containing 2
known_NIR_9756	chr19	46321140	46327008	-	46321137	46327008	A3SS	ENSMUST00000235485.2	known	0.75	6	2	6	2	n	0.78	7	2	7	2	n	0.75	6	2	6	2	n	0.50	3	3	3	3	n	0.60	9	6	9	6	y	0.20	1	4	1	4	n	0.39	7	11	7	11	y	0.75	6	2	6	2	n	0.67	12	6	12	6	y	0.43	3	4	3	4	n	0.76	13	4	13	4	y	0.61	11	7	11	7	y	ENSMUSG00000036748.17	Cuedc2	chr19	protein_coding	CUE domain containing 2
known_NIR_9757	chr19	46321140	46327008	-	46321140	46326752	A5SS	ENSMUST00000236066.2	known	0.16	6	31	6	31	y	0.23	7	23	7	23	y	0.19	6	26	6	26	y	0.09	3	29	3	29	y	0.23	9	30	9	30	y	0.06	1	15	1	15	n	0.17	7	34	7	34	y	0.23	6	20	6	20	y	0.27	12	32	12	32	y	0.06	3	46	3	46	y	0.26	13	37	13	37	y	0.26	11	32	11	32	y	ENSMUSG00000036748.17	Cuedc2	chr19	protein_coding	CUE domain containing 2
known_NIR_9758	chr19	46321140	46327008	-	46321140;46326859	46326752;46327008	ES	ENSMUST00000167861.8	known	0.26	6	17.0	6	31;3	y	0.37	7	12.0	7	23;1	n	0.30	6	14.0	6	26;2	y	0.16	3	15.5	3	29;2	y	0.37	9	15.5	9	30;1	n	0.10	1	9.5	1	15;4	n	0.27	7	18.5	7	34;3	y	0.32	6	12.5	6	20;5	y	0.41	12	17.5	12	32;3	y	0.11	3	24.0	3	46;2	y	0.40	13	19.5	13	37;2	y	0.37	11	18.5	11	32;5	y	ENSMUSG00000036748.17	Cuedc2	chr19	protein_coding	CUE domain containing 2
known_NIR_9759	chr19	46321140;46326850	46326752;46327008	-	46321140	46327008	cassetteExon	ENSMUST00000051234.9	known	0.82	27.5	6	31;24	6	y	0.70	16.0	7	23;9	7	y	0.76	18.5	6	26;11	6	y	0.87	19.5	3	29;10	3	y	0.70	21.0	9	30;12	9	y	0.93	13.5	1	15;12	1	n	0.76	22.0	7	34;10	7	y	0.68	12.5	6	20;5	6	y	0.66	23.0	12	32;14	12	y	0.91	31.5	3	46;17	3	y	0.65	24.5	13	37;12	13	y	0.65	20.0	11	32;8	11	y	ENSMUSG00000036748.17	Cuedc2	chr19	protein_coding	CUE domain containing 2
known_NIR_9760	chr19	46321140;46326869	46326752;46327008	-	46321140	46327008	cassetteExon	ENSMUST00000051234.9	known	0.74	17.0	6	31;3	6	y	0.62	11.5	7	23;0	7	n	0.70	14.0	6	26;2	6	y	0.83	14.5	3	29;0	3	n	0.65	17.0	9	30;4	9	y	0.89	8.0	1	15;1	1	n	0.73	18.5	7	34;3	7	y	0.65	11.0	6	20;2	6	y	0.59	17.0	12	32;2	12	y	0.89	24.5	3	46;3	3	y	0.62	21.5	13	37;6	13	y	0.62	18.0	11	32;4	11	y	ENSMUSG00000036748.17	Cuedc2	chr19	protein_coding	CUE domain containing 2
known_NIR_9761	chr19	46326850	46327008	-	46321137	46327008	A3SS	ENSMUST00000235485.2	known	0.92	24	2	24	2	y	0.82	9	2	9	2	y	0.85	11	2	11	2	y	0.77	10	3	10	3	y	0.67	12	6	12	6	y	0.75	12	4	12	4	y	0.48	10	11	10	11	y	0.71	5	2	5	2	n	0.70	14	6	14	6	y	0.81	17	4	17	4	y	0.75	12	4	12	4	y	0.53	8	7	8	7	y	ENSMUSG00000036748.17	Cuedc2	chr19	protein_coding	CUE domain containing 2
known_NIR_9762	chr19	46326850	46327008	-	46326859	46327008	A3SS	ENSMUST00000167861.8	known	0.89	24	3	24	3	y	0.90	9	1	9	1	n	0.85	11	2	11	2	y	0.83	10	2	10	2	y	0.92	12	1	12	1	n	0.75	12	4	12	4	y	0.77	10	3	10	3	y	0.50	5	5	5	5	y	0.82	14	3	14	3	y	0.89	17	2	17	2	y	0.86	12	2	12	2	y	0.62	8	5	8	5	y	ENSMUSG00000036748.17	Cuedc2	chr19	protein_coding	CUE domain containing 2
known_NIR_9763	chr19	46326850	46327008	-	46326869	46327008	A3SS	ENSMUST00000236046.2	known	0.89	24	3	24	3	y	1.00	9	0	9	0	n	0.85	11	2	11	2	y	1.00	10	0	10	0	n	0.75	12	4	12	4	y	0.92	12	1	12	1	n	0.77	10	3	10	3	y	0.71	5	2	5	2	n	0.88	14	2	14	2	y	0.85	17	3	17	3	y	0.67	12	6	12	6	y	0.67	8	4	8	4	y	ENSMUSG00000036748.17	Cuedc2	chr19	protein_coding	CUE domain containing 2
known_NIR_9764	chr19	46326859	46327008	-	46321137	46327008	A3SS	ENSMUST00000235485.2	known	0.60	3	2	3	2	n	0.33	1	2	1	2	n	0.50	2	2	2	2	n	0.40	2	3	2	3	n	0.14	1	6	1	6	n	0.50	4	4	4	4	n	0.21	3	11	3	11	y	0.71	5	2	5	2	n	0.33	3	6	3	6	n	0.33	2	4	2	4	n	0.33	2	4	2	4	n	0.42	5	7	5	7	y	ENSMUSG00000036748.17	Cuedc2	chr19	protein_coding	CUE domain containing 2
known_NIR_9765	chr19	46326869	46326959	-	46326869	46327008	A5SS	ENSMUST00000236046.2	known	0.00	0	3	0	3	n	1.00	2	0	2	0	n	0.00	0	2	0	2	n	1.00	3	0	3	0	n	0.67	8	4	8	4	y	0.50	1	1	1	1	n	0.57	4	3	4	3	n	0.80	8	2	8	2	y	0.50	2	2	2	2	n	0.67	6	3	6	3	n	0.14	1	6	1	6	n	0.00	0	4	0	4	n	ENSMUSG00000036748.17	Cuedc2	chr19	protein_coding	CUE domain containing 2
known_NIR_9766	chr19	46326869	46327008	-	46321137	46327008	A3SS	ENSMUST00000235485.2	known	0.60	3	2	3	2	n	0.00	0	2	0	2	n	0.50	2	2	2	2	n	0.00	0	3	0	3	n	0.40	4	6	4	6	y	0.20	1	4	1	4	n	0.21	3	11	3	11	y	0.50	2	2	2	2	n	0.25	2	6	2	6	n	0.43	3	4	3	4	n	0.60	6	4	6	4	y	0.36	4	7	4	7	y	ENSMUSG00000036748.17	Cuedc2	chr19	protein_coding	CUE domain containing 2
known_NIR_9767	chr19	46357772	46360621	+	46357772;46360546	46360375;46360621	ES	ENSMUST00000128041.8	known	0.00	0	10.0	0	12;8	n	0.57	8	6.0	8	6;6	y	0.00	0	3.5	0	2;5	n	0.27	2	5.5	2	4;7	y	0.09	1	10.0	1	9;11	n	0.00	0	3.5	0	4;3	n	0.17	2	10.0	2	9;11	y	0.00	0	5.0	0	8;2	n	0.23	3	10.0	3	14;6	y	0.17	3	14.5	3	15;14	y	0.15	2	11.5	2	10;13	y	0.14	1	6.0	1	5;7	n	ENSMUSG00000025227.15	Mfsd13a	chr19	protein_coding	major facilitator superfamily domain containing 13a
known_NIR_9768	chr19	46375955;46380955	46380788;46384069	-	46375955	46384069	cassetteExon	ENSMUST00000040270.6	known	0.00	0.0	111	0;0	111	n	0.02	1.0	65	2;0	65	n	0.01	2.0	151	1;3	151	n	0.03	3.5	99	2;5	99	y	0.01	2.5	173	1;4	173	n	0.00	0.0	74	0;0	74	n	0.01	1.0	115	0;2	115	n	0.01	1.0	79	0;2	79	n	0.02	1.0	65	0;2	65	n	0.01	1.0	97	0;2	97	n	0.00	0.0	83	0;0	83	n	0.00	0.0	104	0;0	104	n	ENSMUSG00000025228.6	Actr1a	chr19	protein_coding	ARP1 actin-related protein 1A, centractin alpha
known_NIR_9769	chr19	46439402	46441598	+	46439402	46441601	A3SS	ENSMUST00000039922.13	known	0.14	1	6	1	6	n	0.36	4	7	4	7	y	0.67	8	4	8	4	y	0.62	5	3	5	3	n	1.00	2	0	2	0	n	0.40	2	3	2	3	n	0.33	3	6	3	6	n	0.57	4	3	4	3	n	1.00	3	0	3	0	n	0.57	4	3	4	3	n	1.00	1	0	1	0	n	0.25	2	6	2	6	n	ENSMUSG00000025231.18	Sufu	chr19	protein_coding	SUFU negative regulator of hedgehog signaling
known_NIR_9770	chr19	4644470	4651628	+	4565718	4651628	A5SS	ENSMUST00000068004.13	known	0.04	9	240	9	240	y	0.05	8	165	8	165	y	0.09	50	481	50	481	y	0.02	12	475	12	475	y	0.04	21	467	21	467	y	0.12	42	315	42	315	y	0.10	42	364	42	364	y	0.10	39	352	39	352	y	0.01	2	239	2	239	y	0.08	42	456	42	456	y	0.09	27	259	27	259	y	0.04	13	347	13	347	y	ENSMUSG00000024892.18	Pcx	chr19	protein_coding	pyruvate carboxylase
known_NIR_9771	chr19	4644470	4651628	+	4590115	4651628	A5SS	ENSMUST00000225189.3	known	0.90	9	1	9	1	n	0.73	8	3	8	3	y	0.98	50	1	50	1	n	0.92	12	1	12	1	n	0.81	21	5	21	5	y	1.00	42	0	42	0	n	0.98	42	1	42	1	n	0.97	39	1	39	1	n	0.50	2	2	2	2	n	0.89	42	5	42	5	y	0.96	27	1	27	1	n	1.00	13	0	13	0	n	ENSMUSG00000024892.18	Pcx	chr19	protein_coding	pyruvate carboxylase
known_NIR_9772	chr19	4644488	4651628	+	4565718	4651628	A5SS	ENSMUST00000068004.13	known	0.01	2	240	2	240	y	0.01	1	165	1	165	n	0.02	10	481	10	481	y	0.01	6	475	6	475	y	0.01	7	467	7	467	y	0.05	15	315	15	315	y	0.03	12	364	12	364	y	0.03	12	352	12	352	y	0.02	4	239	4	239	y	0.03	14	456	14	456	y	0.00	1	259	1	259	n	0.01	3	347	3	347	y	ENSMUSG00000024892.18	Pcx	chr19	protein_coding	pyruvate carboxylase
known_NIR_9773	chr19	4644488	4651628	+	4590115	4651628	A5SS	ENSMUST00000225189.3	known	0.67	2	1	2	1	n	0.25	1	3	1	3	n	0.91	10	1	10	1	n	0.86	6	1	6	1	n	0.58	7	5	7	5	y	1.00	15	0	15	0	n	0.92	12	1	12	1	n	0.92	12	1	12	1	n	0.67	4	2	4	2	n	0.74	14	5	14	5	y	0.50	1	1	1	1	n	1.00	3	0	3	0	n	ENSMUSG00000024892.18	Pcx	chr19	protein_coding	pyruvate carboxylase
known_NIR_9774	chr19	4644488	4651628	+	4644470	4651628	A5SS	ENSMUST00000113825.4	known	0.18	2	9	2	9	y	0.11	1	8	1	8	n	0.17	10	50	10	50	y	0.33	6	12	6	12	y	0.25	7	21	7	21	y	0.26	15	42	15	42	y	0.22	12	42	12	42	y	0.24	12	39	12	39	y	0.67	4	2	4	2	n	0.25	14	42	14	42	y	0.04	1	27	1	27	n	0.19	3	13	3	13	y	ENSMUSG00000024892.18	Pcx	chr19	protein_coding	pyruvate carboxylase
known_NIR_9775	chr19	46576449;46576748	46576663;46578580	+	46576449	46578580	cassetteExon	ENSMUST00000236845.2	known	1.00	49.5	0	54;45	0	n	1.00	37.5	0	36;39	0	n	1.00	31.0	0	32;30	0	n	1.00	61.5	0	61;62	0	n	0.98	107.0	2	105;109	2	y	1.00	29.5	0	25;34	0	n	1.00	60.0	0	60;60	0	n	0.98	43.0	1	48;38	1	n	0.98	47.5	1	46;49	1	n	0.94	51.0	3	51;51	3	y	1.00	49.5	0	50;49	0	n	0.98	85.5	2	71;100	2	y	ENSMUSG00000025036.8	Sfxn2	chr19	protein_coding	sideroflexin 2
known_NIR_9776	chr19	46587732;46595198	46595151;46632792	+	46587732	46632792	cassetteExon	ENSMUST00000138302.9	known	0.74	152.5	54	166;139	54	y	0.76	115.0	37	114;116	37	y	0.67	185.5	90	199;172	90	y	0.72	154.0	60	163;145	60	y	0.71	263.0	109	289;237	109	y	0.65	110.0	59	120;100	59	y	0.69	268.0	123	269;267	123	y	0.58	99.5	72	100;99	72	y	0.68	108.5	50	114;103	50	y	0.68	182.5	85	185;180	85	y	0.74	124.0	44	138;110	44	y	0.76	206.5	65	213;200	65	y	ENSMUSG00000047731.18	Wbp1l	chr19	protein_coding	WW domain binding protein 1 like
known_NIR_9777	chr19	46612018	46632792	+	46587732	46632792	A5SS	ENSMUST00000138302.9	known	0.00	0	54	0	54	n	0.07	3	37	3	37	y	0.09	9	90	9	90	y	0.00	0	60	0	60	n	0.08	10	109	10	109	y	0.09	6	59	6	59	y	0.03	4	123	4	123	y	0.10	8	72	8	72	y	0.00	0	50	0	50	n	0.00	0	85	0	85	n	0.02	1	44	1	44	n	0.00	0	65	0	65	n	ENSMUSG00000047731.18	Wbp1l	chr19	protein_coding	WW domain binding protein 1 like
known_NIR_9778	chr19	46612018	46632792	+	46595198	46632792	A5SS	ENSMUST00000099376.11	known	0.00	0	139	0	139	n	0.03	3	116	3	116	y	0.05	9	172	9	172	y	0.00	0	145	0	145	n	0.04	10	237	10	237	y	0.06	6	100	6	100	y	0.01	4	267	4	267	y	0.07	8	99	8	99	y	0.00	0	103	0	103	n	0.00	0	180	0	180	n	0.01	1	110	1	110	n	0.00	0	200	0	200	n	ENSMUSG00000047731.18	Wbp1l	chr19	protein_coding	WW domain binding protein 1 like
known_NIR_9779	chr19	46612018	46632792	+	46612018;46612972	46612749;46632792	ES	ENSMUST00000156649.2	known	-	-	-	-	-	-	0.86	3	0.5	3	1;0	n	0.78	9	2.5	9	2;3	y	-	-	-	-	-	-	0.87	10	1.5	10	1;2	n	0.86	6	1.0	6	1;1	n	0.80	4	1.0	4	2;0	n	0.80	8	2.0	8	1;3	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	ENSMUSG00000047731.18	Wbp1l	chr19	protein_coding	WW domain binding protein 1 like
known_NIR_9780	chr19	46612972	46632792	+	46587732	46632792	A5SS	ENSMUST00000138302.9	known	0.00	0	54	0	54	n	0.00	0	37	0	37	n	0.03	3	90	3	90	y	0.00	0	60	0	60	n	0.02	2	109	2	109	y	0.02	1	59	1	59	n	0.00	0	123	0	123	n	0.04	3	72	3	72	y	0.00	0	50	0	50	n	0.00	0	85	0	85	n	0.00	0	44	0	44	n	0.00	0	65	0	65	n	ENSMUSG00000047731.18	Wbp1l	chr19	protein_coding	WW domain binding protein 1 like
known_NIR_9781	chr19	46612972	46632792	+	46595198	46632792	A5SS	ENSMUST00000099376.11	known	0.00	0	139	0	139	n	0.00	0	116	0	116	n	0.02	3	172	3	172	y	0.00	0	145	0	145	n	0.01	2	237	2	237	y	0.01	1	100	1	100	n	0.00	0	267	0	267	n	0.03	3	99	3	99	y	0.00	0	103	0	103	n	0.00	0	180	0	180	n	0.00	0	110	0	110	n	0.00	0	200	0	200	n	ENSMUSG00000047731.18	Wbp1l	chr19	protein_coding	WW domain binding protein 1 like
known_NIR_9782	chr19	46633006	46640913	+	46632894	46640913	A5SS	ENSMUST00000138302.9	known	0.03	9	261	9	261	y	0.02	5	250	5	250	y	0.03	13	372	13	372	y	0.03	8	297	8	297	y	0.02	11	508	11	508	y	0.05	10	205	10	205	y	0.04	20	521	20	521	y	0.05	12	225	12	225	y	0.03	6	200	6	200	y	0.02	9	412	9	412	y	0.02	6	268	6	268	y	0.02	7	370	7	370	y	ENSMUSG00000047731.18	Wbp1l	chr19	protein_coding	WW domain binding protein 1 like
known_NIR_9783	chr19	46697557	46700660	+	46697557;46698100	46697986;46700660	ES	ENSMUST00000236063.2	known	0.00	0	81.0	0	149;13	n	0.00	0	79.0	0	147;11	n	0.01	2	188.5	2	350;27	y	0.00	0	74.5	0	143;6	n	0.00	0	177.5	0	342;13	n	0.01	1	127.5	1	246;9	n	0.00	0	158.5	0	293;24	n	0.00	0	138.5	0	258;19	n	0.00	0	52.5	0	102;3	n	0.00	0	100.0	0	191;9	n	0.00	0	64.5	0	119;10	n	0.00	0	95.0	0	179;11	n	ENSMUSG00000003559.9	As3mt	chr19	protein_coding	arsenite methyltransferase
known_NIR_9784	chr19	46697557	46700660	+	46697557;46698122	46697986;46700660	ES	ENSMUST00000003655.9	known	0.00	0	162.5	0	149;176	n	0.00	0	147.5	0	147;148	n	0.01	2	325.0	2	350;300	y	0.00	0	148.5	0	143;154	n	0.00	0	311.0	0	342;280	n	0.00	1	239.0	1	246;232	n	0.00	0	278.5	0	293;264	n	0.00	0	246.0	0	258;234	n	0.00	0	110.5	0	102;119	n	0.00	0	172.0	0	191;153	n	0.00	0	117.5	0	119;116	n	0.00	0	178.5	0	179;178	n	ENSMUSG00000003559.9	As3mt	chr19	protein_coding	arsenite methyltransferase
known_NIR_9785	chr19	46698100	46700660	+	46698122	46700660	A5SS	ENSMUST00000003655.9	known	0.07	13	176	13	176	y	0.07	11	148	11	148	y	0.08	27	300	27	300	y	0.04	6	154	6	154	y	0.04	13	280	13	280	y	0.04	9	232	9	232	y	0.08	24	264	24	264	y	0.08	19	234	19	234	y	0.02	3	119	3	119	y	0.06	9	153	9	153	y	0.08	10	116	10	116	y	0.06	11	178	11	178	y	ENSMUSG00000003559.9	As3mt	chr19	protein_coding	arsenite methyltransferase
known_NIR_9786	chr19	4673270	4673854	-	4673270;4673591	4673529;4673854	ES	ENSMUST00000224707.2	known	0.00	0	33.0	0	32;34	n	0.03	1	37.5	1	41;34	n	0.07	2	25.5	2	32;19	y	0.00	0	28.5	0	30;27	n	0.02	1	40.0	1	39;41	n	0.00	0	15.0	0	12;18	n	0.00	0	34.5	0	35;34	n	0.05	1	17.5	1	14;21	n	0.00	0	25.5	0	29;22	n	0.04	1	21.5	1	24;19	n	0.00	0	24.0	0	25;23	n	0.00	0	33.0	0	36;30	n	ENSMUSG00000024889.6	Rce1	chr19	protein_coding	Ras converting CAAX endopeptidase 1
known_NIR_9787	chr19	4673270	4673854	-	4673591	4673854	3pMXE	ENSMUST00000225264.2	known	0.00	0	34	0	34	n	0.03	1	34	1	34	n	0.10	2	19	2	19	y	0.00	0	27	0	27	n	0.02	1	41	1	41	n	0.00	0	18	0	18	n	0.00	0	34	0	34	n	0.05	1	21	1	21	n	0.00	0	22	0	22	n	0.05	1	19	1	19	n	0.00	0	23	0	23	n	0.00	0	30	0	30	n	ENSMUSG00000024889.6	Rce1	chr19	protein_coding	Ras converting CAAX endopeptidase 1
known_NIR_9788	chr19	4673270;4673604	4673529;4673854	-	4673270	4673854	cassetteExon	ENSMUST00000237059.2	known	1.00	17.0	0	32;2	0	n	0.96	22.0	1	41;3	1	n	0.89	17.0	2	32;2	2	y	1.00	15.0	0	30;0	0	n	0.95	21.0	1	39;3	1	n	1.00	6.5	0	12;1	0	n	1.00	19.5	0	35;4	0	n	0.88	7.0	1	14;0	1	n	1.00	15.0	0	29;1	0	n	0.93	13.5	1	24;3	1	n	1.00	15.0	0	25;5	0	n	1.00	18.0	0	36;0	0	n	ENSMUSG00000024889.6	Rce1	chr19	protein_coding	Ras converting CAAX endopeptidase 1
known_NIR_9789	chr19	4673604	4673854	-	4673591	4673854	A3SS	ENSMUST00000224707.2	known	0.06	2	34	2	34	y	0.08	3	34	3	34	y	0.10	2	19	2	19	y	0.00	0	27	0	27	n	0.07	3	41	3	41	y	0.05	1	18	1	18	n	0.11	4	34	4	34	y	0.00	0	21	0	21	n	0.04	1	22	1	22	n	0.14	3	19	3	19	y	0.18	5	23	5	23	y	0.00	0	30	0	30	n	ENSMUSG00000024889.6	Rce1	chr19	protein_coding	Ras converting CAAX endopeptidase 1
known_NIR_9790	chr19	4674179	4674713	-	4674209	4674713	A3SS	ENSMUST00000224707.2	known	0.00	0	23	0	23	n	0.06	1	15	1	15	n	0.00	0	28	0	28	n	0.04	1	24	1	24	n	0.14	3	18	3	18	y	0.05	1	20	1	20	n	0.00	0	16	0	16	n	0.00	0	17	0	17	n	0.09	2	21	2	21	y	0.04	1	27	1	27	n	0.00	0	21	0	21	n	0.00	0	16	0	16	n	ENSMUSG00000024889.6	Rce1	chr19	protein_coding	Ras converting CAAX endopeptidase 1
known_NIR_9791	chr19	4674209	4674688	-	4674209	4674713	A5SS	ENSMUST00000224707.2	known	0.18	5	23	5	23	y	0.00	0	15	0	15	n	0.07	2	28	2	28	y	0.08	2	24	2	24	y	0.10	2	18	2	18	y	0.13	3	20	3	20	y	0.27	6	16	6	16	y	0.00	0	17	0	17	n	0.09	2	21	2	21	y	0.00	0	27	0	27	n	0.00	0	21	0	21	n	0.00	0	16	0	16	n	ENSMUSG00000024889.6	Rce1	chr19	protein_coding	Ras converting CAAX endopeptidase 1
known_NIR_9792	chr19	4675124	4675221	-	4675120	4675221	A3SS	ENSMUST00000224707.2	known	0.63	17	10	17	10	y	0.67	16	8	16	8	y	0.88	23	3	23	3	y	0.88	21	3	21	3	y	0.89	31	4	31	4	y	0.80	16	4	16	4	y	0.64	14	8	14	8	y	0.68	13	6	13	6	y	0.76	13	4	13	4	y	0.63	12	7	12	7	y	0.80	12	3	12	3	y	0.75	15	5	15	5	y	ENSMUSG00000024889.6	Rce1	chr19	protein_coding	Ras converting CAAX endopeptidase 1
known_NIR_9793	chr19	46857070	46865647	+	46857070;46860160	46860095;46865647	ES	ENSMUST00000099373.12	known	0.55	9	7.5	9	7;8	y	0.59	5	3.5	5	3;4	y	0.36	10	17.5	10	16;19	y	0.27	3	8.0	3	8;8	y	0.47	7	8.0	7	6;10	y	0.27	3	8.0	3	12;4	y	0.50	7	7.0	7	8;6	y	0.20	2	8.0	2	9;7	y	0.33	4	8.0	4	9;7	y	0.42	4	5.5	4	6;5	y	0.24	3	9.5	3	6;13	y	0.53	8	7.0	8	5;9	y	ENSMUSG00000064105.14	Cnnm2	chr19	protein_coding	cyclin M2
known_NIR_9794	chr19	46886108;46886960	46886767;46887061	-	46886108	46887061	cassetteExon	ENSMUST00000235234.2	known	0.05	1.0	18	2;0	18	n	0.10	2.0	19	3;1	19	n	0.07	4.0	53	3;5	53	y	0.05	2.0	38	2;2	38	y	0.17	3.5	17	6;1	17	n	0.05	1.5	31	3;0	31	n	0.08	3.0	34	4;2	34	y	0.19	3.5	15	5;2	15	y	0.21	3.0	11	5;1	11	n	0.06	2.0	29	0;4	29	n	0.21	3.0	11	4;2	11	y	0.03	1.0	28	2;0	28	n	ENSMUSG00000025041.18	Nt5c2	chr19	protein_coding	5'-nucleotidase, cytosolic II
known_NIR_9795	chr19	46893531	46912701	-	46893531	46897929	5pMXE	ENSMUST00000174731.3	known	1.00	10	0	10	0	n	0.81	17	4	17	4	y	0.77	23	7	23	7	y	0.64	16	9	16	9	y	0.81	21	5	21	5	y	0.84	16	3	16	3	y	0.60	12	8	12	8	y	0.93	13	1	13	1	n	0.67	10	5	10	5	y	0.61	17	11	17	11	y	0.50	4	4	4	4	n	0.89	17	2	17	2	y	ENSMUSG00000025041.18	Nt5c2	chr19	protein_coding	5'-nucleotidase, cytosolic II
known_NIR_9796	chr19	46893531;46897987	46897929;46912701	-	46893531	46912701	cassetteExon	ENSMUST00000235234.2	known	0.13	1.5	10	0;3	10	n	0.15	3.0	17	4;2	17	y	0.19	5.5	23	7;4	23	y	0.29	6.5	16	9;4	16	y	0.18	4.5	21	5;4	21	y	0.09	1.5	16	3;0	16	n	0.41	8.5	12	8;9	12	y	0.04	0.5	13	1;0	13	n	0.23	3.0	10	5;1	10	n	0.37	10.0	17	11;9	17	y	0.43	3.0	4	4;2	4	y	0.06	1.0	17	2;0	17	n	ENSMUSG00000025041.18	Nt5c2	chr19	protein_coding	5'-nucleotidase, cytosolic II
known_NIR_9797	chr19	47031232	47036386	-	47031232;47034357	47034249;47036386	ES	ENSMUST00000026032.7	known	0.00	0	33.5	0	30;37	n	0.04	1	24.0	1	25;23	n	0.00	0	50.5	0	45;56	n	0.00	0	28.0	0	32;24	n	0.08	4	44.0	4	50;38	y	0.05	1	17.5	1	19;16	n	0.03	1	35.0	1	25;45	n	0.00	0	18.5	0	19;18	n	0.11	2	16.0	2	22;10	y	0.00	0	37.5	0	43;32	n	0.00	0	31.5	0	32;31	n	0.02	1	42.0	1	38;46	n	ENSMUSG00000025050.9	Pcgf6	chr19	protein_coding	polycomb group ring finger 6
known_NIR_9798	chr19	47496037	47496245	-	47490156	47496245	A3SS	ENSMUST00000049369.16	known	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.23	3	10	3	10	y	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	ENSMUSG00000042694.18	Stn1	chr19	protein_coding	STN1, CST complex subunit
known_NIR_9799	chr19	47613923;47616179	47616087;47623908	+	47613923	47623908	cassetteExon	ENSMUST00000026043.12	known	0.86	25.5	4	23;28	4	y	0.76	19.0	6	18;20	6	y	0.81	29.5	7	29;30	7	y	0.86	29.5	5	32;27	5	y	0.78	28.5	8	26;31	8	y	0.78	21.0	6	19;23	6	y	0.85	33.5	6	35;32	6	y	0.88	21.5	3	16;27	3	y	0.73	22.0	8	18;26	8	y	0.82	27.0	6	29;25	6	y	0.70	18.5	8	20;17	8	y	0.84	26.5	5	24;29	5	y	ENSMUSG00000025060.16	Slk	chr19	protein_coding	STE20-like kinase
known_NIR_9800	chr19	47847994	47851818	+	47847969	47851818	A5SS	ENSMUST00000026050.8	known	0.00	0	380	0	380	n	0.00	0	341	0	341	n	0.00	0	112	0	112	n	0.00	0	378	0	378	n	0.00	0	287	0	287	n	0.00	0	44	0	44	n	0.00	0	399	0	399	n	0.00	0	76	0	76	n	0.00	2	460	2	460	y	0.00	0	614	0	614	n	0.00	0	440	0	440	n	0.00	0	561	0	561	n	ENSMUSG00000025068.9	Gsto1	chr19	protein_coding	glutathione S-transferase omega 1
known_NIR_9801	chr19	4807697	4812005	+	4807697	4810041	3pMXE	ENSMUST00000183008.2	known	0.68	15	7	15	7	y	0.89	24	3	24	3	y	0.77	17	5	17	5	y	0.75	18	6	18	6	y	0.81	25	6	25	6	y	0.71	5	2	5	2	n	0.73	16	6	16	6	y	0.56	10	8	10	8	y	0.76	13	4	13	4	y	0.83	29	6	29	6	y	0.80	16	4	16	4	y	0.72	23	9	23	9	y	ENSMUSG00000033760.18	Rbm4b	chr19	protein_coding	RNA binding motif protein 4B
known_NIR_9802	chr19	4807697;4810310	4810041;4812005	+	4807697	4812005	cassetteExon	ENSMUST00000235278.2	known	0.21	4.0	15	7;1	15	n	0.06	1.5	24	3;0	24	n	0.13	2.5	17	5;0	17	n	0.14	3.0	18	6;0	18	n	0.11	3.0	25	6;0	25	n	0.29	2.0	5	2;2	5	n	0.16	3.0	16	6;0	16	n	0.31	4.5	10	8;1	10	n	0.13	2.0	13	4;0	13	n	0.09	3.0	29	6;0	29	n	0.16	3.0	16	4;2	16	y	0.16	4.5	23	9;0	23	n	ENSMUSG00000033760.18	Rbm4b	chr19	protein_coding	RNA binding motif protein 4B
known_NIR_9803	chr19	4812675	4815372	+	4812675;4814599	4814378;4815372	ES	ENSMUST00000235278.2	known	0.93	19	1.5	19	3;0	n	0.87	17	2.5	17	3;2	y	0.87	13	2.0	13	2;2	y	0.95	21	1.0	21	2;0	n	0.81	13	3.0	13	5;1	n	0.95	10	0.5	10	1;0	n	0.90	18	2.0	18	4;0	n	0.83	10	2.0	10	3;1	n	1.00	28	0.0	28	0;0	n	0.90	27	3.0	27	3;3	y	0.93	27	2.0	27	0;4	n	0.91	25	2.5	25	3;2	y	ENSMUSG00000033760.18	Rbm4b	chr19	protein_coding	RNA binding motif protein 4B
known_NIR_9804	chr19	4835595	4837389	-	4835595	4842426	A5SS	ENSMUST00000178615.8	known	0.83	64	13	64	13	y	0.71	42	17	42	17	y	0.83	57	12	57	12	y	0.82	58	13	58	13	y	0.89	85	10	85	10	y	0.85	34	6	34	6	y	0.85	68	12	68	12	y	0.80	43	11	43	11	y	0.78	32	9	32	9	y	0.87	71	11	71	11	y	0.80	53	13	53	13	y	0.73	47	17	47	17	y	ENSMUSG00000094936.9	Rbm4	chr19	protein_coding	RNA binding motif protein 4
known_NIR_9805	chr19	4835595	4842426	-	4835595;4838070	4837389;4842426	ES	ENSMUST00000180248.8	known	0.18	13	57.5	13	64;51	y	0.30	17	40.0	17	42;38	y	0.17	12	57.5	12	57;58	y	0.18	13	58.0	13	58;58	y	0.11	10	84.5	10	85;84	y	0.16	6	32.0	6	34;30	y	0.18	12	54.5	12	68;41	y	0.22	11	39.0	11	43;35	y	0.20	9	37.0	9	32;42	y	0.13	11	71.0	11	71;71	y	0.20	13	51.0	13	53;49	y	0.22	17	61.0	17	47;75	y	ENSMUSG00000094936.9	Rbm4	chr19	protein_coding	RNA binding motif protein 4
known_NIR_9806	chr19	4835595	4842426	-	4838070	4842426	3pMXE	ENSMUST00000172000.3	known	0.20	13	51	13	51	y	0.31	17	38	17	38	y	0.17	12	58	12	58	y	0.18	13	58	13	58	y	0.11	10	84	10	84	y	0.17	6	30	6	30	y	0.23	12	41	12	41	y	0.24	11	35	11	35	y	0.18	9	42	9	42	y	0.13	11	71	11	71	y	0.21	13	49	13	49	y	0.18	17	75	17	75	y	ENSMUSG00000096370.9	Gm21992	chr19	protein_coding	predicted gene 21992
known_NIR_9807	chr19	4840338	4842426	-	4838070	4842426	A3SS	ENSMUST00000172000.3	known	0.00	0	51	0	51	n	0.03	1	38	1	38	n	0.02	1	58	1	58	n	0.00	0	58	0	58	n	0.01	1	84	1	84	n	0.03	1	30	1	30	n	0.00	0	41	0	41	n	0.00	0	35	0	35	n	0.00	0	42	0	42	n	0.00	0	71	0	71	n	0.00	0	49	0	49	n	0.03	2	75	2	75	y	ENSMUSG00000096370.9	Gm21992	chr19	protein_coding	predicted gene 21992
known_NIR_9808	chr19	4842848	4843844	-	4842848	4843700	A5SS	ENSMUST00000178727.2	known	0.73	35	13	35	13	y	0.55	21	17	21	17	y	0.56	23	18	23	18	y	0.62	31	19	31	19	y	0.57	39	30	39	30	y	0.81	25	6	25	6	y	0.46	23	27	23	27	y	0.56	14	11	14	11	y	0.56	18	14	18	14	y	0.65	34	18	34	18	y	0.56	15	12	15	12	y	0.62	38	23	38	23	y	ENSMUSG00000096370.9	Gm21992	chr19	protein_coding	predicted gene 21992
known_NIR_9809	chr19	4842848	4843855	-	4842848	4843700	A5SS	ENSMUST00000178727.2	known	0.07	1	13	1	13	n	0.00	0	17	0	17	n	0.10	2	18	2	18	y	0.10	2	19	2	19	y	0.09	3	30	3	30	y	0.00	0	6	0	6	n	0.10	3	27	3	27	y	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.14	3	18	3	18	y	0.20	3	12	3	12	y	0.04	1	23	1	23	n	ENSMUSG00000096370.9	Gm21992	chr19	protein_coding	predicted gene 21992
known_NIR_9810	chr19	4842848	4843855	-	4842848	4843844	A5SS	ENSMUST00000164209.9	known	0.03	1	35	1	35	n	0.00	0	21	0	21	n	0.08	2	23	2	23	y	0.06	2	31	2	31	y	0.07	3	39	3	39	y	0.00	0	25	0	25	n	0.12	3	23	3	23	y	0.00	0	14	0	14	n	0.00	0	18	0	18	n	0.08	3	34	3	34	y	0.17	3	15	3	15	y	0.03	1	38	1	38	n	ENSMUSG00000094936.9	Rbm4	chr19	protein_coding	RNA binding motif protein 4
known_NIR_9811	chr19	4851833	4852579	-	4851833	4852000	5pMXE	ENSMUST00000177776.2	known	0.93	27	2	27	2	y	0.95	21	1	21	1	n	1.00	22	0	22	0	n	0.96	24	1	24	1	n	1.00	20	0	20	0	n	1.00	9	0	9	0	n	1.00	23	0	23	0	n	0.83	10	2	10	2	y	0.92	22	2	22	2	y	0.94	34	2	34	2	y	0.96	25	1	25	1	n	1.00	16	0	16	0	n	ENSMUSG00000096370.9	Gm21992	chr19	protein_coding	predicted gene 21992
known_NIR_9812	chr19	4854043	4861200	-	4844037	4861200	A3SS	ENSMUST00000178353.2	known	0.82	23	5	23	5	y	0.86	19	3	19	3	y	0.81	22	5	22	5	y	0.82	36	8	36	8	y	0.88	30	4	30	4	y	0.64	9	5	9	5	y	0.81	21	5	21	5	y	0.81	13	3	13	3	y	0.76	16	5	16	5	y	0.79	27	7	27	7	y	0.86	25	4	25	4	y	0.78	25	7	25	7	y	ENSMUSG00000096370.9	Gm21992	chr19	protein_coding	predicted gene 21992
known_NIR_9813	chr19	4882921	4884201	-	4882921	4883369	A5SS&ES	ENSMUST00000236451.2	known	0.00	0	739	0	739	n	0.00	0	730	0	730	n	0.00	0	245	0	245	n	0.00	0	722	0	722	n	0.00	0	846	0	846	n	0.00	0	157	0	157	n	0.00	4	870	4	870	y	0.00	0	260	0	260	n	0.00	0	724	0	724	n	0.00	1	867	1	867	n	0.00	0	895	0	895	n	0.00	0	759	0	759	n	ENSMUSG00000034108.7	Ccs	chr19	protein_coding	copper chaperone for superoxide dismutase
known_NIR_9814	chr19	4882921	4884201	-	4882921;4883546	4883369;4884201	ES	ENSMUST00000037246.7	known	0.00	0	708.0	0	739;677	n	0.00	0	676.5	0	730;623	n	0.00	0	241.5	0	245;238	n	0.00	0	718.5	0	722;715	n	0.00	0	829.0	0	846;812	n	0.00	0	158.0	0	157;159	n	0.01	4	791.5	4	870;713	y	0.00	0	240.0	0	260;220	n	0.00	0	692.0	0	724;660	n	0.00	1	915.0	1	867;963	n	0.00	0	856.0	0	895;817	n	0.00	0	738.0	0	759;717	n	ENSMUSG00000034108.7	Ccs	chr19	protein_coding	copper chaperone for superoxide dismutase
known_NIR_9815	chr19	4882921;4884338	4884201;4888859	-	4882921;4883546	4883369;4888859	MXE	ENSMUST00000235245.2	known	0.49	355.5	369.5	0;711	739;0	n	0.50	371.5	365.0	0;743	730;0	n	0.52	131.5	123.0	0;263	245;1	n	0.53	401.0	361.0	0;802	722;0	n	0.53	478.5	424.0	0;957	846;2	n	0.55	94.5	78.5	0;189	157;0	n	0.50	442.5	436.0	4;881	870;2	y	0.51	136.5	130.0	0;273	260;0	n	0.52	395.5	362.0	0;791	724;0	n	0.56	557.5	434.5	1;1114	867;2	n	0.51	475.0	448.0	0;950	895;1	n	0.52	416.0	379.5	0;832	759;0	n	ENSMUSG00000034108.7	Ccs	chr19	protein_coding	copper chaperone for superoxide dismutase
known_NIR_9816	chr19	4883546	4884201	-	4883546	4884222	A5SS	ENSMUST00000236451.2	known	0.99	677	8	677	8	y	0.98	623	13	623	13	y	0.96	238	9	238	9	y	0.99	715	6	715	6	y	0.97	812	28	812	28	y	0.99	159	1	159	1	n	0.97	713	19	713	19	y	0.97	220	7	220	7	y	0.98	660	14	660	14	y	0.98	963	22	963	22	y	0.97	817	21	817	21	y	0.97	717	20	717	20	y	ENSMUSG00000034108.7	Ccs	chr19	protein_coding	copper chaperone for superoxide dismutase
known_NIR_9817	chr19	4883546	4884268	-	4883475	4884268	A3SS	ENSMUST00000236178.2	known	0.14	2	12	2	12	y	0.12	2	15	2	15	y	0.33	4	8	4	8	y	0.00	0	23	0	23	n	0.23	7	24	7	24	y	0.00	0	3	0	3	n	0.12	3	23	3	23	y	0.18	2	9	2	9	y	0.08	2	22	2	22	y	0.00	0	22	0	22	n	0.11	3	24	3	24	y	0.23	7	23	7	23	y	ENSMUSG00000034108.7	Ccs	chr19	protein_coding	copper chaperone for superoxide dismutase
known_NIR_9818	chr19	4883546	4884268	-	4883546	4884201	A5SS	ENSMUST00000037246.7	known	0.00	2	677	2	677	y	0.00	2	623	2	623	y	0.02	4	238	4	238	y	0.00	0	715	0	715	n	0.01	7	812	7	812	y	0.00	0	159	0	159	n	0.00	3	713	3	713	y	0.01	2	220	2	220	y	0.00	2	660	2	660	y	0.00	0	963	0	963	n	0.00	3	817	3	817	y	0.01	7	717	7	717	y	ENSMUSG00000034108.7	Ccs	chr19	protein_coding	copper chaperone for superoxide dismutase
known_NIR_9819	chr19	4883546	4884268	-	4883546	4884222	A5SS	ENSMUST00000236451.2	known	0.20	2	8	2	8	y	0.13	2	13	2	13	y	0.31	4	9	4	9	y	0.00	0	6	0	6	n	0.20	7	28	7	28	y	0.00	0	1	0	1	n	0.14	3	19	3	19	y	0.22	2	7	2	7	n	0.12	2	14	2	14	y	0.00	0	22	0	22	n	0.12	3	21	3	21	y	0.26	7	20	7	20	y	ENSMUSG00000034108.7	Ccs	chr19	protein_coding	copper chaperone for superoxide dismutase
known_NIR_9820	chr19	4883546	4888859	-	4883546;4884338	4884201;4888859	ES	ENSMUST00000037246.7	known	0.00	0	694.0	0	677;711	n	0.00	0	683.0	0	623;743	n	0.00	1	250.5	1	238;263	n	0.00	0	758.5	0	715;802	n	0.00	2	884.5	2	812;957	y	0.00	0	174.0	0	159;189	n	0.00	2	797.0	2	713;881	y	0.00	0	246.5	0	220;273	n	0.00	0	725.5	0	660;791	n	0.00	2	1038.5	2	963;1114	y	0.00	1	883.5	1	817;950	n	0.00	0	774.5	0	717;832	n	ENSMUSG00000034108.7	Ccs	chr19	protein_coding	copper chaperone for superoxide dismutase
known_NIR_9821	chr19	4883546	4888859	-	4883546;4884338	4884222;4888859	ES	ENSMUST00000236451.2	known	0.00	0	359.5	0	8;711	n	0.00	0	378.0	0	13;743	n	0.01	1	136.0	1	9;263	n	0.00	0	404.0	0	6;802	n	0.00	2	492.5	2	28;957	y	0.00	0	95.0	0	1;189	n	0.00	2	450.0	2	19;881	y	0.00	0	140.0	0	7;273	n	0.00	0	402.5	0	14;791	n	0.00	2	568.0	2	22;1114	y	0.00	1	485.5	1	21;950	n	0.00	0	426.0	0	20;832	n	ENSMUSG00000034108.7	Ccs	chr19	protein_coding	copper chaperone for superoxide dismutase
known_NIR_9822	chr19	4883546	4888859	-	4884338	4888859	A3SS&ES	ENSMUST00000236178.2	known	0.00	0	711	0	711	n	0.00	0	743	0	743	n	0.00	1	263	1	263	n	0.00	0	802	0	802	n	0.00	2	957	2	957	y	0.00	0	189	0	189	n	0.00	2	881	2	881	y	0.00	0	273	0	273	n	0.00	0	791	0	791	n	0.00	2	1114	2	1114	y	0.00	1	950	1	950	n	0.00	0	832	0	832	n	ENSMUSG00000034108.7	Ccs	chr19	protein_coding	copper chaperone for superoxide dismutase
known_NIR_9823	chr19	4883546;4884338	4884268;4888859	-	4883546	4888859	cassetteExon	ENSMUST00000235245.2	known	1.00	356.5	0	2;711	0	n	1.00	372.5	0	2;743	0	n	0.99	133.5	1	4;263	1	n	1.00	401.0	0	0;802	0	n	1.00	482.0	2	7;957	2	y	1.00	94.5	0	0;189	0	n	1.00	442.0	2	3;881	2	y	1.00	137.5	0	2;273	0	n	1.00	396.5	0	2;791	0	n	1.00	557.0	2	0;1114	2	n	1.00	476.5	1	3;950	1	n	1.00	419.5	0	7;832	0	n	ENSMUSG00000034108.7	Ccs	chr19	protein_coding	copper chaperone for superoxide dismutase
known_NIR_9824	chr19	4905824	4906540	+	4905824	4906098	A3SS	ENSMUST00000236406.2	known	0.00	0	55	0	55	n	0.06	2	29	2	29	y	0.04	1	22	1	22	n	0.05	4	72	4	72	y	0.03	2	57	2	57	y	0.00	0	18	0	18	n	0.00	0	79	0	79	n	0.00	0	20	0	20	n	0.00	0	38	0	38	n	0.00	0	74	0	74	n	0.00	0	56	0	56	n	0.00	0	83	0	83	n	ENSMUSG00000083282.4	Ctsf	chr19	protein_coding	cathepsin F
known_NIR_9825	chr19	4905824	4906540	+	4905824;4906336	4906098;4906540	ES	ENSMUST00000237755.2	known	0.00	0	63.0	0	55;71	n	0.05	2	37.5	2	29;46	y	0.03	1	28.0	1	22;34	n	0.05	4	81.5	4	72;91	y	0.03	2	69.0	2	57;81	y	0.00	0	17.0	0	18;16	n	0.00	0	77.5	0	79;76	n	0.00	0	28.0	0	20;36	n	0.00	0	53.5	0	38;69	n	0.00	0	90.5	0	74;107	n	0.00	0	58.0	0	56;60	n	0.00	0	87.0	0	83;91	n	ENSMUSG00000083282.4	Ctsf	chr19	protein_coding	cathepsin F
known_NIR_9826	chr19	4905824	4906540	+	4906336	4906540	5pMXE	ENSMUST00000237401.2	known	0.00	0	71	0	71	n	0.04	2	46	2	46	y	0.03	1	34	1	34	n	0.04	4	91	4	91	y	0.02	2	81	2	81	y	0.00	0	16	0	16	n	0.00	0	76	0	76	n	0.00	0	36	0	36	n	0.00	0	69	0	69	n	0.00	0	107	0	107	n	0.00	0	60	0	60	n	0.00	0	91	0	91	n	ENSMUSG00000083282.4	Ctsf	chr19	protein_coding	cathepsin F
known_NIR_9827	chr19	4905836	4906098	+	4905824	4906098	A5SS	ENSMUST00000119694.3	known	0.02	1	55	1	55	n	0.00	0	29	0	29	n	0.08	2	22	2	22	y	0.04	3	72	3	72	y	0.00	0	57	0	57	n	0.05	1	18	1	18	n	0.01	1	79	1	79	n	0.00	0	20	0	20	n	0.03	1	38	1	38	n	0.00	0	74	0	74	n	0.00	0	56	0	56	n	0.00	0	83	0	83	n	ENSMUSG00000083282.4	Ctsf	chr19	protein_coding	cathepsin F
known_NIR_9828	chr19	4906336	4906473	+	4906336	4906540	A3SS	ENSMUST00000119694.3	known	0.03	2	71	2	71	y	0.00	0	46	0	46	n	0.06	2	34	2	34	y	0.02	2	91	2	91	y	0.01	1	81	1	81	n	0.00	0	16	0	16	n	0.03	2	76	2	76	y	0.08	3	36	3	36	y	0.04	3	69	3	69	y	0.04	4	107	4	107	y	0.05	3	60	3	60	y	0.05	5	91	5	91	y	ENSMUSG00000083282.4	Ctsf	chr19	protein_coding	cathepsin F
known_NIR_9829	chr19	4963898	4964608	-	4963980	4964608	A3SS	ENSMUST00000025851.4	known	0.03	5	171	5	171	y	0.01	2	145	2	145	y	0.03	6	214	6	214	y	0.00	0	132	0	132	n	0.00	0	217	0	217	n	0.00	0	137	0	137	n	0.00	0	185	0	185	n	0.00	0	137	0	137	n	0.00	0	105	0	105	n	0.00	0	169	0	169	n	0.00	0	153	0	153	n	0.00	0	124	0	124	n	ENSMUSG00000063904.5	Dpp3	chr19	protein_coding	dipeptidylpeptidase 3
known_NIR_9830	chr19	4977087	4977976	-	4977087	4978248	A5SS	ENSMUST00000025851.4	known	0.16	5	26	5	26	y	0.19	5	22	5	22	y	0.51	41	40	41	40	y	0.19	9	38	9	38	y	0.29	22	53	22	53	y	0.46	26	31	26	31	y	0.28	11	28	11	28	y	0.62	32	20	32	20	y	0.19	5	22	5	22	y	0.16	7	36	7	36	y	0.22	8	28	8	28	y	0.17	8	38	8	38	y	ENSMUSG00000063904.5	Dpp3	chr19	protein_coding	dipeptidylpeptidase 3
known_NIR_9831	chr19	4991940	4993017	-	4991940	4992966	A5SS	ENSMUST00000025834.15	known	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.20	2	8	2	8	y	1.00	1	0	1	0	n	0.00	0	5	0	5	n	-	-	-	-	-	-	1.00	2	0	2	0	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000024901.16	Peli3	chr19	protein_coding	pellino 3
known_NIR_9832	chr19	5012543	5012928	+	5012543	5012907	A3SS	ENSMUST00000025836.6	known	0.00	0	129	0	129	n	0.00	0	159	0	159	n	0.00	0	88	0	88	n	0.00	0	131	0	131	n	0.00	0	154	0	154	n	0.00	0	75	0	75	n	0.00	0	160	0	160	n	0.00	0	78	0	78	n	0.02	3	123	3	123	y	0.00	0	179	0	179	n	0.00	0	120	0	120	n	0.00	0	159	0	159	n	ENSMUSG00000024902.6	Mrpl11	chr19	protein_coding	mitochondrial ribosomal protein L11
known_NIR_9833	chr19	5013717	5014702	+	5013693	5014702	A5SS	ENSMUST00000025836.6	known	0.06	11	173	11	173	y	0.08	15	171	15	171	y	0.14	21	128	21	128	y	0.05	8	138	8	138	y	0.05	11	199	11	199	y	0.19	22	92	22	92	y	0.07	16	227	16	227	y	0.13	14	94	14	94	y	0.04	6	151	6	151	y	0.07	15	205	15	205	y	0.05	11	193	11	193	y	0.04	8	183	8	183	y	ENSMUSG00000024902.6	Mrpl11	chr19	protein_coding	mitochondrial ribosomal protein L11
known_NIR_9834	chr19	5091639	5095921	+	5091518	5095921	A5SS	ENSMUST00000236560.2	known	0.12	10	73	10	73	y	0.01	1	86	1	86	n	0.06	6	90	6	90	y	0.06	3	48	3	48	y	0.01	1	72	1	72	n	0.00	0	39	0	39	n	0.00	0	85	0	85	n	0.03	1	29	1	29	n	0.04	2	55	2	55	y	0.09	7	75	7	75	y	0.03	2	60	2	60	y	0.04	3	68	3	68	y	ENSMUSG00000117789.2	Gm50388	chr19	protein_coding	predicted gene, 50388
known_NIR_9835	chr19	5096939	5097174	+	5096939	5097420	A3SS	ENSMUST00000236560.2	known	0.00	0	83	0	83	n	0.00	0	75	0	75	n	0.00	0	81	0	81	n	0.00	0	85	0	85	n	0.00	0	74	0	74	n	0.00	0	57	0	57	n	0.00	0	84	0	84	n	0.02	1	41	1	41	n	0.06	2	31	2	31	y	0.01	1	117	1	117	n	0.01	1	78	1	78	n	0.00	0	101	0	101	n	ENSMUSG00000117789.2	Gm50388	chr19	protein_coding	predicted gene, 50388
known_NIR_9836	chr19	5141453	5142157	+	5141453;5141724	5141569;5142157	ES	ENSMUST00000237603.2	known	0.00	1	266.5	1	260;273	n	0.00	0	356.0	0	377;335	n	0.01	3	398.5	3	440;357	y	0.00	0	281.0	0	311;251	n	0.00	0	370.5	0	404;337	n	0.00	0	262.5	0	264;261	n	0.00	0	397.0	0	411;383	n	0.00	0	253.5	0	282;225	n	0.00	0	229.0	0	259;199	n	0.00	1	383.5	1	418;349	n	0.00	0	311.5	0	318;305	n	0.00	0	279.0	0	302;256	n	ENSMUSG00000024875.6	Yif1a	chr19	protein_coding	Yip1 interacting factor homolog A (S. cerevisiae)
known_NIR_9837	chr19	5141453;5142250	5142157;5142330	+	5141453;5141724	5141569;5142330	MXE	ENSMUST00000238093.2	known	0.52	139.0	130.0	1;277	260;0	n	0.47	166.0	189.5	0;332	377;2	n	0.43	168.0	221.5	3;333	440;3	y	0.44	123.5	155.5	0;247	311;0	n	0.41	141.0	202.0	0;282	404;0	n	0.51	135.5	132.0	0;271	264;0	n	0.45	168.0	205.5	0;336	411;0	n	0.45	115.5	141.5	0;231	282;1	n	0.42	94.0	129.5	0;188	259;0	n	0.45	170.0	209.0	1;339	418;0	n	0.48	147.0	159.0	0;294	318;0	n	0.45	123.5	151.0	0;247	302;0	n	ENSMUSG00000024875.6	Yif1a	chr19	protein_coding	Yip1 interacting factor homolog A (S. cerevisiae)
known_NIR_9838	chr19	5141724	5142330	+	5141724;5142250	5142157;5142330	ES	ENSMUST00000237603.2	known	0.00	0	275.0	0	273;277	n	0.01	2	333.5	2	335;332	y	0.01	3	345.0	3	357;333	y	0.00	0	249.0	0	251;247	n	0.00	0	309.5	0	337;282	n	0.00	0	266.0	0	261;271	n	0.00	0	359.5	0	383;336	n	0.00	1	228.0	1	225;231	n	0.00	0	193.5	0	199;188	n	0.00	0	344.0	0	349;339	n	0.00	0	299.5	0	305;294	n	0.00	0	251.5	0	256;247	n	ENSMUSG00000024875.6	Yif1a	chr19	protein_coding	Yip1 interacting factor homolog A (S. cerevisiae)
known_NIR_9839	chr19	5150600	5150752	-	5150600	5150695	A5SS	ENSMUST00000025804.7	known	0.01	3	333	3	333	y	0.00	0	397	0	397	n	0.00	0	321	0	321	n	0.00	0	440	0	440	n	0.00	0	471	0	471	n	0.00	0	186	0	186	n	0.00	0	435	0	435	n	0.00	0	236	0	236	n	0.00	0	307	0	307	n	0.00	0	558	0	558	n	0.00	0	344	0	344	n	0.00	0	478	0	478	n	ENSMUSG00000024870.7	Rab1b	chr19	protein_coding	RAB1B, member RAS oncogene family
known_NIR_9840	chr19	5155278	5156009	-	5155278	5156953	A5SS	ENSMUST00000025804.7	known	0.01	2	210	2	210	y	0.01	1	163	1	163	n	0.00	0	203	0	203	n	0.01	3	238	3	238	y	0.00	0	302	0	302	n	0.01	1	128	1	128	n	0.00	0	253	0	253	n	0.00	0	130	0	130	n	0.00	0	147	0	147	n	0.00	0	308	0	308	n	0.01	2	192	2	192	y	0.00	1	226	1	226	n	ENSMUSG00000024870.7	Rab1b	chr19	protein_coding	RAB1B, member RAS oncogene family
known_NIR_9841	chr19	5167460	5168150	-	5167497	5168150	A3SS	ENSMUST00000025798.13	known	1.00	3	0	3	0	n	0.50	2	2	2	2	n	0.40	4	6	4	6	y	0.22	2	7	2	7	n	0.62	10	6	10	6	y	0.20	2	8	2	8	y	0.20	3	12	3	12	y	0.44	4	5	4	5	n	0.67	4	2	4	2	n	0.75	3	1	3	1	n	0.50	3	3	3	3	n	0.25	3	9	3	9	y	ENSMUSG00000024862.17	Klc2	chr19	protein_coding	kinesin light chain 2
known_NIR_9842	chr19	52980150	52983852	-	52920693	52983852	A3SS	ENSMUST00000236456.2	known	0.98	120	3	120	3	y	0.98	113	2	113	2	y	0.99	178	2	178	2	y	0.97	97	3	97	3	y	0.99	116	1	116	1	n	0.99	91	1	91	1	n	0.99	146	2	146	2	y	0.97	92	3	92	3	y	1.00	85	0	85	0	n	1.00	102	0	102	0	n	1.00	109	0	109	0	n	0.96	122	5	122	5	y	ENSMUSG00000025027.19	Xpnpep1	chr19	protein_coding	X-prolyl aminopeptidase (aminopeptidase P) 1, soluble
known_NIR_9843	chr19	52980150	52983852	-	52937114	52983852	A3SS	ENSMUST00000182500.8	known	1.00	120	0	120	0	n	1.00	113	0	113	0	n	0.99	178	1	178	1	n	1.00	97	0	97	0	n	1.00	116	0	116	0	n	1.00	91	0	91	0	n	0.99	146	1	146	1	n	1.00	92	0	92	0	n	0.98	85	2	85	2	y	1.00	102	0	102	0	n	0.99	109	1	109	1	n	1.00	122	0	122	0	n	ENSMUSG00000025027.19	Xpnpep1	chr19	protein_coding	X-prolyl aminopeptidase (aminopeptidase P) 1, soluble
known_NIR_9844	chr19	53013814	53026945	-	53013814	53020440	5pMXE	ENSMUST00000236008.2	known	0.61	14	9	14	9	y	0.36	8	14	8	14	y	0.57	48	36	48	36	y	0.49	22	23	22	23	y	0.38	23	38	23	38	y	0.52	24	22	24	22	y	0.53	26	23	26	23	y	0.47	22	25	22	25	y	0.36	15	27	15	27	y	0.66	27	14	27	14	y	0.57	17	13	17	13	y	0.61	20	13	20	13	y	ENSMUSG00000025027.19	Xpnpep1	chr19	protein_coding	X-prolyl aminopeptidase (aminopeptidase P) 1, soluble
known_NIR_9845	chr19	53013814;53020528	53020440;53026945	-	53013814	53026945	cassetteExon	ENSMUST00000236456.2	known	0.49	13.5	14	9;18	14	y	0.54	9.5	8	14;5	8	y	0.40	32.0	48	36;28	48	y	0.48	20.0	22	23;17	22	y	0.53	25.5	23	38;13	23	y	0.40	16.0	24	22;10	24	y	0.43	20.0	26	23;17	26	y	0.44	17.5	22	25;10	22	y	0.52	16.5	15	27;6	15	y	0.36	15.5	27	14;17	27	y	0.35	9.0	17	13;5	17	y	0.38	12.5	20	13;12	20	y	ENSMUSG00000025027.19	Xpnpep1	chr19	protein_coding	X-prolyl aminopeptidase (aminopeptidase P) 1, soluble
known_NIR_9846	chr19	53020528;53021252	53021056;53026945	-	53020528	53026945	cassetteExon	ENSMUST00000183274.8	known	0.10	2.0	18	2;2	18	y	0.00	0.0	5	0;0	5	n	0.12	4.0	28	6;2	28	y	0.17	3.5	17	7;0	17	n	0.16	2.5	13	2;3	13	y	0.23	3.0	10	5;1	10	n	0.13	2.5	17	2;3	17	y	0.09	1.0	10	1;1	10	n	0.20	1.5	6	2;1	6	n	0.11	2.0	17	2;2	17	y	0.09	0.5	5	0;1	5	n	0.14	2.0	12	2;2	12	y	ENSMUSG00000025027.19	Xpnpep1	chr19	protein_coding	X-prolyl aminopeptidase (aminopeptidase P) 1, soluble
known_NIR_9847	chr19	53021252	53026945	-	53013814	53026945	A3SS	ENSMUST00000236456.2	known	0.12	2	14	2	14	y	0.00	0	8	0	8	n	0.04	2	48	2	48	y	0.00	0	22	0	22	n	0.12	3	23	3	23	y	0.04	1	24	1	24	n	0.10	3	26	3	26	y	0.04	1	22	1	22	n	0.06	1	15	1	15	n	0.07	2	27	2	27	y	0.06	1	17	1	17	n	0.09	2	20	2	20	y	ENSMUSG00000025027.19	Xpnpep1	chr19	protein_coding	X-prolyl aminopeptidase (aminopeptidase P) 1, soluble
known_NIR_9848	chr19	53231058;53232836	53232741;53233429	+	53231058	53233429	cassetteExon	ENSMUST00000111741.10	known	0.17	2.5	12	3;2	12	y	0.44	4.0	5	4;4	5	y	0.50	10.0	10	14;6	10	y	0.58	9.5	7	7;12	7	y	0.31	5.5	12	5;6	12	y	0.47	3.5	4	2;5	4	y	0.32	6.5	14	6;7	14	y	0.54	3.5	3	2;5	3	y	0.43	3.0	4	3;3	4	y	0.52	7.5	7	8;7	7	y	0.44	7.0	9	7;7	9	y	0.21	4.0	15	5;3	15	y	ENSMUSG00000025026.16	Add3	chr19	protein_coding	adducin 3 (gamma)
known_NIR_9849	chr19	53318151	53319782	+	53299404	53319782	A5SS	ENSMUST00000003870.15	known	0.93	27	2	27	2	y	0.95	21	1	21	1	n	0.73	32	12	32	12	y	0.85	40	7	40	7	y	0.87	45	7	45	7	y	0.91	20	2	20	2	y	0.97	35	1	35	1	n	0.89	16	2	16	2	y	0.85	28	5	28	5	y	0.84	48	9	48	9	y	0.92	23	2	23	2	y	0.91	31	3	31	3	y	ENSMUSG00000025025.15	Mxi1	chr19	protein_coding	MAX interactor 1, dimerization protein
known_NIR_9850	chr19	53318236	53319782	+	53299404	53319782	A5SS	ENSMUST00000003870.15	known	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.08	1	12	1	12	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.18	2	9	2	9	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000025025.15	Mxi1	chr19	protein_coding	MAX interactor 1, dimerization protein
known_NIR_9851	chr19	53318236	53319782	+	53318151	53319782	A5SS	ENSMUST00000111737.3	known	0.00	0	27	0	27	n	0.00	0	21	0	21	n	0.03	1	32	1	32	n	0.00	0	40	0	40	n	0.00	0	45	0	45	n	0.00	0	20	0	20	n	0.00	0	35	0	35	n	0.06	1	16	1	16	n	0.00	0	28	0	28	n	0.04	2	48	2	48	y	0.00	0	23	0	23	n	0.00	0	31	0	31	n	ENSMUSG00000025025.15	Mxi1	chr19	protein_coding	MAX interactor 1, dimerization protein
known_NIR_9852	chr19	53319914	53320447	+	53319914	53334882	A3SS	ENSMUST00000003870.15	known	0.00	0	30	0	30	n	0.00	0	26	0	26	n	0.05	3	54	3	54	y	0.00	0	43	0	43	n	0.02	1	44	1	44	n	0.00	0	27	0	27	n	0.00	0	49	0	49	n	0.03	1	31	1	31	n	0.00	0	23	0	23	n	0.01	1	69	1	69	n	0.00	0	37	0	37	n	0.00	0	76	0	76	n	ENSMUSG00000025025.15	Mxi1	chr19	protein_coding	MAX interactor 1, dimerization protein
known_NIR_9853	chr19	53319914	53357973	+	53319914;53334911	53334882;53357973	ES	ENSMUST00000003870.15	known	0.00	0	33.0	0	30;36	n	0.00	0	27.0	0	26;28	n	0.00	0	54.0	0	54;54	n	0.00	0	43.0	0	43;43	n	0.02	1	46.5	1	44;49	n	0.00	0	30.0	0	27;33	n	0.02	1	47.5	1	49;46	n	0.06	2	34.0	2	31;37	y	0.00	0	23.0	0	23;23	n	0.00	0	71.0	0	69;73	n	0.00	0	41.5	0	37;46	n	0.00	0	83.5	0	76;91	n	ENSMUSG00000025025.15	Mxi1	chr19	protein_coding	MAX interactor 1, dimerization protein
known_NIR_9854	chr19	53372149	53372885	-	53372166	53372885	A3SS	ENSMUST00000235830.2	known	0.91	30	3	30	3	y	1.00	29	0	29	0	n	1.00	48	0	48	0	n	0.94	44	3	44	3	y	1.00	49	0	49	0	n	0.76	16	5	16	5	y	0.94	46	3	46	3	y	0.96	27	1	27	1	n	0.94	32	2	32	2	y	0.89	34	4	34	4	y	0.94	32	2	32	2	y	0.95	63	3	63	3	y	ENSMUSG00000025024.8	Smndc1	chr19	protein_coding	survival motor neuron domain containing 1
known_NIR_9855	chr19	53373027	53377734	-	53373027;53374987	53374804;53377734	ES	ENSMUST00000235830.2	known	0.87	24	3.5	24	2;5	y	1.00	25	0.0	25	0;0	n	0.96	27	1.0	27	2;0	n	0.87	24	3.5	24	4;3	y	0.84	29	5.5	29	7;4	y	0.87	17	2.5	17	1;4	n	0.91	31	3.0	31	2;4	y	0.93	32	2.5	32	4;1	n	0.88	29	4.0	29	4;4	y	0.91	20	2.0	20	2;2	y	0.86	22	3.5	22	5;2	y	0.99	37	0.5	37	1;0	n	ENSMUSG00000025024.8	Smndc1	chr19	protein_coding	survival motor neuron domain containing 1
known_NIR_9856	chr19	5338438	5341333	-	5338441	5341333	A3SS	ENSMUST00000025774.11	known	0.03	2	65	2	65	y	0.04	2	44	2	44	y	0.06	6	88	6	88	y	0.05	4	71	4	71	y	0.07	8	104	8	104	y	0.09	5	48	5	48	y	0.09	8	83	8	83	y	0.04	2	54	2	54	y	0.04	2	47	2	47	y	0.05	5	90	5	90	y	0.05	4	71	4	71	y	0.04	4	103	4	103	y	ENSMUSG00000024853.11	Sf3b2	chr19	protein_coding	splicing factor 3b, subunit 2
known_NIR_9857	chr19	53891919	53895880	+	53880887	53895880	A5SS	ENSMUST00000074371.13	known	1.00	78	0	78	0	n	1.00	51	0	51	0	n	1.00	98	0	98	0	n	0.98	131	2	131	2	y	1.00	175	0	175	0	n	1.00	75	0	75	0	n	0.98	118	3	118	3	y	1.00	104	0	104	0	n	0.99	80	1	80	1	n	0.98	127	2	127	2	y	1.00	81	0	81	0	n	0.99	213	2	213	2	y	ENSMUSG00000024975.14	Pdcd4	chr19	protein_coding	programmed cell death 4
known_NIR_9858	chr19	53920636	53931897	-	53922001	53931897	A3SS	ENSMUST00000237049.2	known	1.00	61	0	61	0	n	1.00	72	0	72	0	n	0.96	107	4	107	4	y	0.99	69	1	69	1	n	0.96	73	3	73	3	y	0.98	61	1	61	1	n	0.99	87	1	87	1	n	1.00	36	0	36	0	n	0.96	45	2	45	2	y	0.98	88	2	88	2	y	0.97	66	2	66	2	y	0.94	45	3	45	3	y	ENSMUSG00000084957.4	Bbip1	chr19	protein_coding	BBSome interacting protein 1
known_NIR_9859	chr19	53920636	53932848	-	53920636;53932010	53931897;53932848	ES	ENSMUST00000135402.4	known	0.15	6	33.5	6	61;6	y	0.00	0	39.5	0	72;7	n	0.00	0	57.5	0	107;8	n	0.02	1	40.0	1	69;11	n	0.00	0	45.5	0	73;18	n	0.00	0	31.5	0	61;2	n	0.00	0	50.0	0	87;13	n	0.00	0	20.5	0	36;5	n	0.04	1	27.0	1	45;9	n	0.00	0	51.5	0	88;15	n	0.00	0	39.0	0	66;12	n	0.00	0	28.0	0	45;11	n	ENSMUSG00000084957.4	Bbip1	chr19	protein_coding	BBSome interacting protein 1
known_NIR_9860	chr19	53920636;53922001	53921922;53931897	-	53920636	53931897	cassetteExon	ENSMUST00000135402.4	known	0.00	0.0	61	0;0	61	n	0.00	0.0	72	0;0	72	n	0.03	3.5	107	3;4	107	y	0.01	1.0	69	1;1	69	n	0.03	2.5	73	2;3	73	y	0.01	0.5	61	0;1	61	n	0.01	1.0	87	1;1	87	n	0.03	1.0	36	2;0	36	n	0.03	1.5	45	1;2	45	n	0.03	2.5	88	3;2	88	y	0.04	2.5	66	3;2	66	y	0.03	1.5	45	0;3	45	n	ENSMUSG00000084957.4	Bbip1	chr19	protein_coding	BBSome interacting protein 1
known_NIR_9861	chr19	53932010	53932587	-	53932010	53932848	A5SS	ENSMUST00000135402.4	known	0.78	21	6	21	6	y	0.82	31	7	31	7	y	0.83	40	8	40	8	y	0.67	22	11	22	11	y	0.67	37	18	37	18	y	0.94	33	2	33	2	y	0.72	33	13	33	13	y	0.74	14	5	14	5	y	0.65	17	9	17	9	y	0.65	28	15	28	15	y	0.68	26	12	26	12	y	0.74	31	11	31	11	y	ENSMUSG00000084957.4	Bbip1	chr19	protein_coding	BBSome interacting protein 1
known_NIR_9862	chr19	53933444	53975885	+	53932833	53975885	A5SS	ENSMUST00000169861.9	known	0.57	4	3	4	3	n	1.00	2	0	2	0	n	0.93	14	1	14	1	n	1.00	3	0	3	0	n	1.00	7	0	7	0	n	0.67	2	1	2	1	n	1.00	5	0	5	0	n	0.69	9	4	9	4	y	-	-	-	-	-	-	0.62	8	5	8	5	y	1.00	4	0	4	0	n	0.62	5	3	5	3	n	ENSMUSG00000024976.15	Shoc2	chr19	protein_coding	Shoc2, leucine rich repeat scaffold protein
known_NIR_9863	chr19	53938374	53975885	+	53932833	53975885	A5SS	ENSMUST00000169861.9	known	0.25	1	3	1	3	n	-	-	-	-	-	-	0.75	3	1	3	1	n	1.00	3	0	3	0	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	2	0	2	0	n	0.67	8	4	8	4	y	1.00	2	0	2	0	n	0.00	0	5	0	5	n	1.00	1	0	1	0	n	0.25	1	3	1	3	n	ENSMUSG00000024976.15	Shoc2	chr19	protein_coding	Shoc2, leucine rich repeat scaffold protein
known_NIR_9864	chr19	5415186	5416596	-	5415186	5415846	A5SS&ES	ENSMUST00000237167.2	known	0.02	5	216	5	216	y	0.02	5	213	5	213	y	0.06	12	203	12	203	y	0.01	3	216	3	216	y	0.02	4	208	4	208	y	0.05	6	123	6	123	y	0.03	8	262	8	262	y	0.02	3	128	3	128	y	0.06	8	135	8	135	y	0.03	7	272	7	272	y	0.02	5	217	5	217	y	0.02	4	262	4	262	y	ENSMUSG00000024844.16	Banf1	chr19	protein_coding	BAF nuclear assembly factor 1
known_NIR_9865	chr19	5415186	5416596	-	5415186;5415984	5415846;5416596	ES	ENSMUST00000025762.16	known	0.02	5	205.0	5	216;194	y	0.03	5	181.0	5	213;149	y	0.06	12	193.5	12	203;184	y	0.02	3	195.5	3	216;175	y	0.02	4	198.5	4	208;189	y	0.05	6	104.5	6	123;86	y	0.03	8	247.0	8	262;232	y	0.03	3	112.5	3	128;97	y	0.05	8	137.5	8	135;140	y	0.03	7	230.5	7	272;189	y	0.02	5	214.5	5	217;212	y	0.02	4	244.5	4	262;227	y	ENSMUSG00000024844.16	Banf1	chr19	protein_coding	BAF nuclear assembly factor 1
known_NIR_9866	chr19	5415984	5416291	-	5415984	5416596	A5SS	ENSMUST00000025762.16	known	0.01	2	194	2	194	y	0.01	2	149	2	149	y	0.01	1	184	1	184	n	0.00	0	175	0	175	n	0.00	0	189	0	189	n	0.02	2	86	2	86	y	0.01	3	232	3	232	y	0.02	2	97	2	97	y	0.01	1	140	1	140	n	0.01	2	189	2	189	y	0.01	2	212	2	212	y	0.02	4	227	4	227	y	ENSMUSG00000024844.16	Banf1	chr19	protein_coding	BAF nuclear assembly factor 1
known_NIR_9867	chr19	5415984	5416462	-	5415984	5416596	A5SS	ENSMUST00000025762.16	known	0.01	1	194	1	194	n	0.00	0	149	0	149	n	0.01	2	184	2	184	y	0.01	2	175	2	175	y	0.02	3	189	3	189	y	0.00	0	86	0	86	n	0.01	2	232	2	232	y	0.00	0	97	0	97	n	0.01	1	140	1	140	n	0.01	1	189	1	189	n	0.01	2	212	2	212	y	0.00	0	227	0	227	n	ENSMUSG00000024844.16	Banf1	chr19	protein_coding	BAF nuclear assembly factor 1
known_NIR_9868	chr19	5417238	5418450	+	5417238	5418086	A3SS	ENSMUST00000236059.2	known	0.00	0	86	0	86	n	0.00	0	79	0	79	n	0.02	2	110	2	110	y	0.00	0	62	0	62	n	0.00	0	89	0	89	n	0.00	0	63	0	63	n	0.00	0	86	0	86	n	0.00	0	43	0	43	n	0.00	0	70	0	70	n	0.00	0	96	0	96	n	0.00	0	83	0	83	n	0.00	0	89	0	89	n	ENSMUSG00000024841.9	Eif1ad	chr19	protein_coding	eukaryotic translation initiation factor 1A domain containing
known_NIR_9869	chr19	5417238	5418450	+	5417238;5418304	5418086;5418450	ES	ENSMUST00000025759.9	known	0.00	0	79.5	0	86;73	n	0.00	0	84.5	0	79;90	n	0.02	2	120.0	2	110;130	y	0.00	0	79.0	0	62;96	n	0.00	0	111.0	0	89;133	n	0.00	0	64.0	0	63;65	n	0.00	0	98.0	0	86;110	n	0.00	0	60.5	0	43;78	n	0.00	0	71.5	0	70;73	n	0.00	0	112.0	0	96;128	n	0.00	0	103.5	0	83;124	n	0.00	0	88.5	0	89;88	n	ENSMUSG00000024841.9	Eif1ad	chr19	protein_coding	eukaryotic translation initiation factor 1A domain containing
known_NIR_9870	chr19	5457111	5465036	+	5457111	5465040	A3SS	ENSMUST00000174754.9	known	0.57	20	15	20	15	y	0.68	15	7	15	7	y	0.62	18	11	18	11	y	0.43	15	20	15	20	y	0.76	31	10	31	10	y	0.61	22	14	22	14	y	0.74	35	12	35	12	y	0.82	23	5	23	5	y	0.66	19	10	19	10	y	0.74	31	11	31	11	y	0.66	37	19	37	19	y	0.75	36	12	36	12	y	ENSMUSG00000086938.10	4930481A15Rik	chr19	lncRNA	RIKEN cDNA 4930481A15 gene
known_NIR_9871	chr19	5457111	5465635	+	5457111;5465127	5465036;5465635	ES	ENSMUST00000174412.8	known	0.35	7	13.0	7	20;6	y	0.17	2	9.5	2	15;4	y	0.60	14	9.5	14	18;1	n	0.30	4	9.5	4	15;4	y	0.42	12	16.5	12	31;2	y	0.19	3	12.5	3	22;3	y	0.37	11	19.0	11	35;3	y	0.32	6	13.0	6	23;3	y	0.33	5	10.0	5	19;1	n	0.23	5	17.0	5	31;3	y	0.27	7	19.0	7	37;1	n	0.32	9	19.5	9	36;3	y	ENSMUSG00000086938.10	4930481A15Rik	chr19	lncRNA	RIKEN cDNA 4930481A15 gene
known_NIR_9872	chr19	5457111	5465635	+	5457111;5465140	5465040;5465635	ES	ENSMUST00000174754.9	known	0.17	7	34.5	7	15;54	y	0.08	2	23.5	2	7;40	y	0.36	14	24.5	14	11;38	y	0.11	4	31.0	4	20;42	y	0.33	12	24.5	12	10;39	y	0.15	3	17.5	3	14;21	y	0.27	11	30.5	11	12;49	y	0.22	6	21.5	6	5;38	y	0.16	5	27.0	5	10;44	y	0.18	5	23.5	5	11;36	y	0.16	7	37.5	7	19;56	y	0.17	9	43.5	9	12;75	y	ENSMUSG00000086938.10	4930481A15Rik	chr19	lncRNA	RIKEN cDNA 4930481A15 gene
known_NIR_9873	chr19	5457111;5465127	5465040;5465635	+	5457111	5465635	cassetteExon	ENSMUST00000153017.7	known	0.60	10.5	7	15;6	7	y	0.73	5.5	2	7;4	2	y	0.30	6.0	14	11;1	14	n	0.75	12.0	4	20;4	4	y	0.33	6.0	12	10;2	12	y	0.74	8.5	3	14;3	3	y	0.41	7.5	11	12;3	11	y	0.40	4.0	6	5;3	6	y	0.52	5.5	5	10;1	5	n	0.58	7.0	5	11;3	5	y	0.59	10.0	7	19;1	7	n	0.45	7.5	9	12;3	9	y	ENSMUSG00000086938.10	4930481A15Rik	chr19	lncRNA	RIKEN cDNA 4930481A15 gene
known_NIR_9874	chr19	5457111;5465140	5465036;5465635	+	5457111	5465635	cassetteExon	ENSMUST00000153017.7	known	0.84	37.0	7	20;54	7	y	0.93	27.5	2	15;40	2	y	0.67	28.0	14	18;38	14	y	0.88	28.5	4	15;42	4	y	0.74	35.0	12	31;39	12	y	0.88	21.5	3	22;21	3	y	0.79	42.0	11	35;49	11	y	0.84	30.5	6	23;38	6	y	0.86	31.5	5	19;44	5	y	0.87	33.5	5	31;36	5	y	0.87	46.5	7	37;56	7	y	0.86	55.5	9	36;75	9	y	ENSMUSG00000086938.10	4930481A15Rik	chr19	lncRNA	RIKEN cDNA 4930481A15 gene
known_NIR_9875	chr19	5465127	5465635	+	5465140	5465635	A5SS	ENSMUST00000174754.9	known	0.10	6	54	6	54	y	0.09	4	40	4	40	y	0.03	1	38	1	38	n	0.09	4	42	4	42	y	0.05	2	39	2	39	y	0.12	3	21	3	21	y	0.06	3	49	3	49	y	0.07	3	38	3	38	y	0.02	1	44	1	44	n	0.08	3	36	3	36	y	0.02	1	56	1	56	n	0.04	3	75	3	75	y	ENSMUSG00000086938.10	4930481A15Rik	chr19	lncRNA	RIKEN cDNA 4930481A15 gene
known_NIR_9876	chr19	5473003	5473359	-	5473053	5473359	A3SS	ENSMUST00000124478.8	known	0.03	8	261	8	261	y	0.03	9	306	9	306	y	0.04	15	322	15	322	y	0.06	14	208	14	208	y	0.03	12	347	12	347	y	0.06	11	181	11	181	y	0.03	10	353	10	353	y	0.04	8	174	8	174	y	0.04	10	215	10	215	y	0.04	15	383	15	383	y	0.04	13	312	13	312	y	0.03	12	392	12	392	y	ENSMUSG00000024914.17	Drap1	chr19	protein_coding	Dr1 associated protein 1 (negative cofactor 2 alpha)
known_NIR_9877	chr19	5473702	5473800	-	5473681	5473800	A3SS	ENSMUST00000148219.9	known	0.10	25	222	25	222	y	0.14	31	191	31	191	y	0.15	42	246	42	246	y	0.13	31	201	31	201	y	0.11	32	253	32	253	y	0.10	16	139	16	139	y	0.12	40	294	40	294	y	0.17	25	124	25	124	y	0.11	26	203	26	203	y	0.14	49	300	49	300	y	0.18	46	216	46	216	y	0.15	48	267	48	267	y	ENSMUSG00000024914.17	Drap1	chr19	protein_coding	Dr1 associated protein 1 (negative cofactor 2 alpha)
known_NIR_9878	chr19	5475336	5475965	+	5475336	5475979	A3SS	ENSMUST00000159759.3	known	0.20	9	36	9	36	y	0.41	14	20	14	20	y	0.25	15	45	15	45	y	0.14	6	36	6	36	y	0.07	4	50	4	50	y	0.08	4	46	4	46	y	0.14	8	49	8	49	y	0.11	5	42	5	42	y	0.12	4	29	4	29	y	0.07	4	52	4	52	y	0.21	12	44	12	44	y	0.08	5	54	5	54	y	ENSMUSG00000047423.11	AI837181	chr19	protein_coding	expressed sequence AI837181
known_NIR_9879	chr19	55064111	55064723	-	55064107	55064723	A3SS	ENSMUST00000236859.2	known	0.95	95	5	95	5	y	1.00	55	0	55	0	n	0.99	194	2	194	2	y	0.95	113	6	113	6	y	0.95	173	10	173	10	y	0.95	93	5	93	5	y	0.95	172	9	172	9	y	0.97	96	3	96	3	y	0.93	142	11	142	11	y	0.95	228	13	228	13	y	0.97	156	4	156	4	y	0.94	235	16	235	16	y	ENSMUSG00000024978.12	Gpam	chr19	protein_coding	glycerol-3-phosphate acyltransferase, mitochondrial
known_NIR_9880	chr19	55086059	55087761	-	55086059	55091398	A5SS	ENSMUST00000236859.2	known	0.11	2	16	2	16	y	0.00	0	6	0	6	n	0.10	5	47	5	47	y	0.10	2	19	2	19	y	0.02	1	42	1	42	n	0.25	5	15	5	15	y	0.11	3	25	3	25	y	0.18	6	28	6	28	y	0.00	0	27	0	27	n	0.00	0	55	0	55	n	0.00	0	30	0	30	n	0.02	1	41	1	41	n	ENSMUSG00000024978.12	Gpam	chr19	protein_coding	glycerol-3-phosphate acyltransferase, mitochondrial
known_NIR_9881	chr19	55086059	55115446	-	55086059	55087761	5pMXE	ENSMUST00000061856.6	known	0.92	22	2	22	2	y	1.00	13	0	13	0	n	0.84	27	5	27	5	y	0.95	42	2	42	2	y	0.98	52	1	52	1	n	0.79	19	5	19	5	y	0.93	39	3	39	3	y	0.84	32	6	32	6	y	1.00	38	0	38	0	n	1.00	77	0	77	0	n	1.00	39	0	39	0	n	0.99	81	1	81	1	n	ENSMUSG00000024978.12	Gpam	chr19	protein_coding	glycerol-3-phosphate acyltransferase, mitochondrial
known_NIR_9882	chr19	55086059	55115446	-	55086059	55091398	5pMXE	ENSMUST00000236859.2	known	0.58	22	16	22	16	y	0.68	13	6	13	6	y	0.36	27	47	27	47	y	0.69	42	19	42	19	y	0.55	52	42	52	42	y	0.56	19	15	19	15	y	0.61	39	25	39	25	y	0.53	32	28	32	28	y	0.58	38	27	38	27	y	0.58	77	55	77	55	y	0.57	39	30	39	30	y	0.66	81	41	81	41	y	ENSMUSG00000024978.12	Gpam	chr19	protein_coding	glycerol-3-phosphate acyltransferase, mitochondrial
known_NIR_9883	chr19	55086059	55115446	-	55086059;55091559	55091398;55115446	ES	ENSMUST00000235957.2	known	0.50	22	22.0	22	16;28	y	0.63	13	7.5	13	6;9	y	0.38	27	45.0	27	47;43	y	0.60	42	28.0	42	19;37	y	0.53	52	45.5	52	42;49	y	0.51	19	18.0	19	15;21	y	0.61	39	24.5	39	25;24	y	0.57	32	24.5	32	28;21	y	0.63	38	22.0	38	27;17	y	0.59	77	52.5	77	55;50	y	0.60	39	26.5	39	30;23	y	0.64	81	46.5	81	41;52	y	ENSMUSG00000024978.12	Gpam	chr19	protein_coding	glycerol-3-phosphate acyltransferase, mitochondrial
known_NIR_9884	chr19	55091559;55093110	55093059;55115446	-	55091559	55115446	cassetteExon	ENSMUST00000235957.2	known	0.00	0.0	28	0;0	28	n	0.18	2.0	9	1;3	9	n	0.15	7.5	43	7;8	43	y	0.10	4.0	37	3;5	37	y	0.12	6.5	49	7;6	49	y	0.05	1.0	21	1;1	21	n	0.17	5.0	24	5;5	24	y	0.24	6.5	21	11;2	21	y	0.06	1.0	17	1;1	17	n	0.05	2.5	50	1;4	50	n	0.10	2.5	23	2;3	23	y	0.06	3.5	52	4;3	52	y	ENSMUSG00000024978.12	Gpam	chr19	protein_coding	glycerol-3-phosphate acyltransferase, mitochondrial
known_NIR_9885	chr19	55093110	55115446	-	55086059	55115446	A3SS	ENSMUST00000236422.2	known	0.00	0	22	0	22	n	0.19	3	13	3	13	y	0.23	8	27	8	27	y	0.11	5	42	5	42	y	0.10	6	52	6	52	y	0.05	1	19	1	19	n	0.11	5	39	5	39	y	0.06	2	32	2	32	y	0.03	1	38	1	38	n	0.05	4	77	4	77	y	0.07	3	39	3	39	y	0.04	3	81	3	81	y	ENSMUSG00000024978.12	Gpam	chr19	protein_coding	glycerol-3-phosphate acyltransferase, mitochondrial
known_NIR_9886	chr19	5513353	5513632	+	5513332	5513632	A5SS	ENSMUST00000225917.2	known	0.21	18	69	18	69	y	0.21	21	79	21	79	y	0.23	33	108	33	108	y	0.17	14	70	14	70	y	0.19	22	93	22	93	y	0.38	24	39	24	39	y	0.15	17	97	17	97	y	0.17	11	53	11	53	y	0.20	12	49	12	49	y	0.14	17	102	17	102	y	0.18	19	86	19	86	y	0.12	16	121	16	121	y	ENSMUSG00000024911.8	Fibp	chr19	protein_coding	fibroblast growth factor (acidic) intracellular binding protein
known_NIR_9887	chr19	55242598	55257076	+	55240508	55257076	A5SS	ENSMUST00000225551.2	known	0.16	30	154	30	154	y	0.29	32	77	32	77	y	0.30	52	122	52	122	y	0.09	23	222	23	222	y	0.18	54	253	54	253	y	0.18	20	89	20	89	y	0.11	31	260	31	260	y	0.14	21	127	21	127	y	0.08	18	220	18	220	y	0.11	38	296	38	296	y	0.14	32	205	32	205	y	0.12	43	317	43	317	y	ENSMUSG00000024981.7	Acsl5	chr19	protein_coding	acyl-CoA synthetase long-chain family member 5
known_NIR_9888	chr19	55278116	55290990	-	55287320	55290990	3pMXE	ENSMUST00000224897.2	known	0.01	2	215	2	215	y	0.00	1	253	1	253	n	0.02	4	243	4	243	y	0.00	0	226	0	226	n	0.01	2	257	2	257	y	0.00	0	130	0	130	n	0.00	0	313	0	313	n	0.00	0	130	0	130	n	0.01	1	174	1	174	n	0.00	0	283	0	283	n	0.00	0	248	0	248	n	0.01	1	192	1	192	n	ENSMUSG00000024982.11	Zdhhc6	chr19	protein_coding	zinc finger, DHHC domain containing 6
known_NIR_9889	chr19	55278116;55287320	55287127;55290990	-	55278116	55290990	cassetteExon	ENSMUST00000225963.2	known	0.98	108.0	2	1;215	2	n	0.99	127.5	1	2;253	1	n	0.97	122.5	4	2;243	4	y	1.00	113.0	0	0;226	0	n	0.98	128.5	2	0;257	2	n	1.00	66.0	0	2;130	0	n	1.00	156.5	0	0;313	0	n	1.00	65.0	0	0;130	0	n	0.99	87.0	1	0;174	1	n	1.00	142.5	0	2;283	0	n	1.00	124.0	0	0;248	0	n	0.99	97.0	1	2;192	1	n	ENSMUSG00000024982.11	Zdhhc6	chr19	protein_coding	zinc finger, DHHC domain containing 6
known_NIR_9890	chr19	55290301	55290990	-	55287320	55290990	A3SS	ENSMUST00000226103.2	known	0.01	2	215	2	215	y	0.00	0	253	0	253	n	0.00	0	243	0	243	n	0.00	1	226	1	226	n	0.00	0	257	0	257	n	0.00	0	130	0	130	n	0.00	0	313	0	313	n	0.00	0	130	0	130	n	0.00	0	174	0	174	n	0.00	0	283	0	283	n	0.00	0	248	0	248	n	0.00	0	192	0	192	n	ENSMUSG00000024982.11	Zdhhc6	chr19	protein_coding	zinc finger, DHHC domain containing 6
known_NIR_9891	chr19	55303204	55304112	-	55303204	55304228	A5SS	ENSMUST00000225963.2	known	0.02	2	109	2	109	y	0.08	8	97	8	97	y	0.11	17	138	17	138	y	0.07	13	173	13	173	y	0.07	15	187	15	187	y	0.04	4	93	4	93	y	0.08	13	159	13	159	y	0.08	9	99	9	99	y	0.05	7	132	7	132	y	0.10	17	159	17	159	y	0.09	14	136	14	136	y	0.09	16	170	16	170	y	ENSMUSG00000024982.11	Zdhhc6	chr19	protein_coding	zinc finger, DHHC domain containing 6
known_NIR_9892	chr19	5533249	5533483	-	5533219	5533483	A3SS	ENSMUST00000133436.8	known	0.00	0	28	0	28	n	0.00	0	24	0	24	n	0.00	0	19	0	19	n	0.05	1	20	1	20	n	0.04	1	25	1	25	n	0.00	0	14	0	14	n	0.00	0	27	0	27	n	0.00	0	19	0	19	n	0.06	1	17	1	17	n	0.04	1	23	1	23	n	0.09	3	29	3	29	y	0.00	0	22	0	22	n	ENSMUSG00000024906.11	Mus81	chr19	protein_coding	MUS81 structure-specific endonuclease subunit
known_NIR_9893	chr19	5533791	5533958	-	5533693	5533958	A3SS	ENSMUST00000133436.8	known	1.00	20	0	20	0	n	0.92	22	2	22	2	y	1.00	9	0	9	0	n	0.81	13	3	13	3	y	0.93	28	2	28	2	y	0.62	5	3	5	3	n	0.86	32	5	32	5	y	1.00	16	0	16	0	n	0.90	27	3	27	3	y	0.82	18	4	18	4	y	1.00	22	0	22	0	n	0.94	15	1	15	1	n	ENSMUSG00000024906.11	Mus81	chr19	protein_coding	MUS81 structure-specific endonuclease subunit
known_NIR_9894	chr19	5545676	5545925	-	5542638	5545925	A3SS	ENSMUST00000237945.2	known	1.00	10	0	10	0	n	1.00	5	0	5	0	n	1.00	5	0	5	0	n	1.00	9	0	9	0	n	1.00	11	0	11	0	n	1.00	3	0	3	0	n	1.00	14	0	14	0	n	1.00	2	0	2	0	n	1.00	7	0	7	0	n	1.00	14	0	14	0	n	1.00	19	0	19	0	n	0.40	4	6	4	6	y	ENSMUSG00000056185.6	Snx32	chr19	protein_coding	sorting nexin 32
known_NIR_9895	chr19	5548329	5548424	-	5548329	5548440	A5SS	ENSMUST00000237945.2	known	1.00	4	0	4	0	n	1.00	7	0	7	0	n	1.00	1	0	1	0	n	0.67	2	1	2	1	n	0.67	8	4	8	4	y	1.00	4	0	4	0	n	1.00	7	0	7	0	n	1.00	3	0	3	0	n	0.83	10	2	10	2	y	0.82	9	2	9	2	y	1.00	5	0	5	0	n	1.00	6	0	6	0	n	ENSMUSG00000056185.6	Snx32	chr19	protein_coding	sorting nexin 32
known_NIR_9896	chr19	55487736	55612249	+	55487736	55564906	3pMXE	ENSMUST00000225529.2	known	1.00	22	0	22	0	n	1.00	11	0	11	0	n	1.00	22	0	22	0	n	1.00	17	0	17	0	n	1.00	35	0	35	0	n	1.00	20	0	20	0	n	1.00	29	0	29	0	n	0.88	14	2	14	2	y	1.00	16	0	16	0	n	1.00	22	0	22	0	n	1.00	25	0	25	0	n	1.00	14	0	14	0	n	ENSMUSG00000024983.11	Vti1a	chr19	protein_coding	vesicle transport through interaction with t-SNAREs 1A
known_NIR_9897	chr19	55731629;55743514	55743446;55806196	+	55731629	55806196	cassetteExon	ENSMUST00000111662.11	known	0.45	5.0	6	6;4	6	y	0.40	2.0	3	1;3	3	n	0.60	3.0	2	4;2	2	n	0.57	6.5	5	6;7	5	y	0.27	3.0	8	3;3	8	y	0.27	1.5	4	2;1	4	n	0.47	4.5	5	6;3	5	y	0.29	4.5	11	5;4	11	y	0.33	4.5	9	5;4	9	y	0.21	3.0	11	3;3	11	y	0.50	5.0	5	6;4	5	y	0.58	5.5	4	5;6	4	y	ENSMUSG00000024985.21	Tcf7l2	chr19	protein_coding	transcription factor 7 like 2, T cell specific, HMG box
known_NIR_9898	chr19	55899101	55900991	+	55899113	55900991	A5SS	ENSMUST00000111662.11	known	0.11	1	8	1	8	n	0.23	3	10	3	10	y	0.08	1	12	1	12	n	0.00	0	7	0	7	n	0.22	4	14	4	14	y	0.00	0	9	0	9	n	0.12	1	7	1	7	n	0.08	1	12	1	12	n	0.07	1	14	1	14	n	0.08	2	23	2	23	y	0.08	1	11	1	11	n	0.33	4	8	4	8	y	ENSMUSG00000024985.21	Tcf7l2	chr19	protein_coding	transcription factor 7 like 2, T cell specific, HMG box
known_NIR_9899	chr19	55901077	55905771	+	55901077	55905786	A3SS	ENSMUST00000111662.11	known	0.33	2	4	2	4	n	0.00	0	8	0	8	n	0.13	2	13	2	13	y	0.07	1	13	1	13	n	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.08	1	12	1	12	n	0.00	0	9	0	9	n	0.22	2	7	2	7	n	0.21	4	15	4	15	y	0.12	2	15	2	15	y	0.05	1	18	1	18	n	ENSMUSG00000024985.21	Tcf7l2	chr19	protein_coding	transcription factor 7 like 2, T cell specific, HMG box
known_NIR_9900	chr19	55912376;55913012	55912962;55914409	+	55912376	55914409	cassetteExon	ENSMUST00000111662.11	known	0.56	2.5	2	4;1	2	n	0.60	3.0	2	3;3	2	n	0.75	6.0	2	7;5	2	y	0.33	0.5	1	1;0	1	n	0.71	7.5	3	8;7	3	y	1.00	1.0	0	0;2	0	n	0.45	2.5	3	4;1	3	n	0.17	1.0	5	1;1	5	n	0.00	0.0	2	0;0	2	n	0.54	3.5	3	2;5	3	y	0.87	6.5	1	7;6	1	n	1.00	0.5	0	0;1	0	n	ENSMUSG00000024985.21	Tcf7l2	chr19	protein_coding	transcription factor 7 like 2, T cell specific, HMG box
known_NIR_9901	chr19	55912376;55913012	55912962;55919866	+	55912376	55919866	cassetteExon	ENSMUST00000041717.14	known	0.67	2.0	1	4;0	1	n	1.00	1.5	0	3;0	0	n	1.00	3.5	0	7;0	0	n	0.33	1.0	2	1;1	2	n	0.62	5.0	3	8;2	3	y	0.20	0.5	2	0;1	2	n	0.33	2.0	4	4;0	4	n	0.20	0.5	2	1;0	2	n	1.00	1.0	0	0;2	0	n	0.20	1.0	4	2;0	4	n	1.00	5.0	0	7;3	0	n	0.33	1.0	2	0;2	2	n	ENSMUSG00000024985.21	Tcf7l2	chr19	protein_coding	transcription factor 7 like 2, T cell specific, HMG box
known_NIR_9902	chr19	55912376;55913012	55912962;55919866	+	55912376;55915188	55914409;55919866	MXE	ENSMUST00000111662.11	known	0.29	2.0	5.0	4;0	2;8	n	0.21	1.5	5.5	3;0	2;9	n	0.39	3.5	5.5	7;0	2;9	n	0.22	1.0	3.5	1;1	1;6	n	0.42	5.0	7.0	8;2	3;11	y	0.14	0.5	3.0	0;1	0;6	n	0.22	2.0	7.0	4;0	3;11	n	0.12	0.5	3.5	1;0	5;2	n	0.17	1.0	5.0	0;2	2;8	n	0.12	1.0	7.0	2;0	3;11	n	0.34	5.0	9.5	7;3	1;18	n	0.14	1.0	6.0	0;2	0;12	n	ENSMUSG00000024985.21	Tcf7l2	chr19	protein_coding	transcription factor 7 like 2, T cell specific, HMG box
known_NIR_9903	chr19	55912376;55914481	55914409;55919866	+	55912376	55919866	cassetteExon	ENSMUST00000041717.14	known	0.50	1.0	1	2;0	1	n	1.00	1.0	0	2;0	0	n	1.00	2.0	0	2;2	0	n	0.20	0.5	2	1;0	2	n	0.45	2.5	3	3;2	3	n	0.00	0.0	2	0;0	2	n	0.27	1.5	4	3;0	4	n	0.56	2.5	2	5;0	2	n	1.00	1.0	0	2;0	0	n	0.50	4.0	4	3;5	4	y	1.00	1.0	0	1;1	0	n	0.20	0.5	2	0;1	2	n	ENSMUSG00000024985.21	Tcf7l2	chr19	protein_coding	transcription factor 7 like 2, T cell specific, HMG box
known_NIR_9904	chr19	55912376;55914481	55914409;55919866	+	55912376;55913012	55912962;55919866	MXE	ENSMUST00000061496.17	known	0.33	1.0	2.0	2;0	4;0	n	0.40	1.0	1.5	2;0	3;0	n	0.36	2.0	3.5	2;2	7;0	n	0.33	0.5	1.0	1;0	1;1	n	0.33	2.5	5.0	3;2	8;2	y	0.00	0.0	0.5	0;0	0;1	n	0.43	1.5	2.0	3;0	4;0	n	0.83	2.5	0.5	5;0	1;0	n	0.50	1.0	1.0	2;0	0;2	n	0.80	4.0	1.0	3;5	2;0	n	0.17	1.0	5.0	1;1	7;3	n	0.33	0.5	1.0	0;1	0;2	n	ENSMUSG00000024985.21	Tcf7l2	chr19	protein_coding	transcription factor 7 like 2, T cell specific, HMG box
known_NIR_9905	chr19	55913012;55914481	55914409;55919866	+	55913012	55919866	cassetteExon	ENSMUST00000061496.17	known	1.00	0.5	0	1;0	0	n	1.00	1.5	0	3;0	0	n	1.00	3.5	0	5;2	0	n	0.00	0.0	1	0;0	1	n	0.69	4.5	2	7;2	2	y	0.50	1.0	1	2;0	1	n	1.00	0.5	0	1;0	0	n	1.00	0.5	0	1;0	0	n	0.00	0.0	2	0;0	2	n	1.00	5.0	0	5;5	0	n	0.54	3.5	3	6;1	3	n	0.33	1.0	2	1;1	2	n	ENSMUSG00000024985.21	Tcf7l2	chr19	protein_coding	transcription factor 7 like 2, T cell specific, HMG box
known_NIR_9906	chr19	55914481	55919866	+	55914481;55915188	55915116;55919866	ES	ENSMUST00000153888.9	known	0.00	0	6.0	0	4;8	n	0.00	0	6.0	0	3;9	n	0.22	2	7.0	2	5;9	y	0.00	0	4.5	0	3;6	n	0.21	2	7.5	2	4;11	y	0.00	0	4.5	0	3;6	n	0.00	0	9.5	0	8;11	n	0.00	0	2.0	0	2;2	n	0.00	0	5.5	0	3;8	n	0.40	5	7.5	5	4;11	y	0.07	1	12.5	1	7;18	n	0.12	1	7.0	1	2;12	n	ENSMUSG00000024985.21	Tcf7l2	chr19	protein_coding	transcription factor 7 like 2, T cell specific, HMG box
known_NIR_9907	chr19	55915188	55919866	+	55912376	55919866	A5SS	ENSMUST00000041717.14	known	0.89	8	1	8	1	n	1.00	9	0	9	0	n	1.00	9	0	9	0	n	0.75	6	2	6	2	n	0.79	11	3	11	3	y	0.75	6	2	6	2	n	0.73	11	4	11	4	y	0.50	2	2	2	2	n	1.00	8	0	8	0	n	0.73	11	4	11	4	y	1.00	18	0	18	0	n	0.86	12	2	12	2	y	ENSMUSG00000024985.21	Tcf7l2	chr19	protein_coding	transcription factor 7 like 2, T cell specific, HMG box
known_NIR_9908	chr19	55915188	55919866	+	55913012	55919866	A5SS	ENSMUST00000061496.17	known	1.00	8	0	8	0	n	1.00	9	0	9	0	n	1.00	9	0	9	0	n	0.86	6	1	6	1	n	0.85	11	2	11	2	y	0.86	6	1	6	1	n	1.00	11	0	11	0	n	1.00	2	0	2	0	n	0.80	8	2	8	2	y	1.00	11	0	11	0	n	0.86	18	3	18	3	y	0.86	12	2	12	2	y	ENSMUSG00000024985.21	Tcf7l2	chr19	protein_coding	transcription factor 7 like 2, T cell specific, HMG box
known_NIR_9909	chr19	56286483	56297269	+	56286483;56295315	56295205;56297269	ES	ENSMUST00000078284.13	known	0.10	25	218.5	25	199;238	y	0.10	24	207.0	24	194;220	y	0.09	21	223.5	21	202;245	y	0.11	40	334.0	40	297;371	y	0.13	48	331.5	48	299;364	y	0.08	10	119.5	10	107;132	y	0.16	49	259.5	49	209;310	y	0.11	26	210.5	26	187;234	y	0.14	36	215.5	36	197;234	y	0.12	44	314.5	44	318;311	y	0.15	35	201.0	35	186;216	y	0.12	50	374.5	50	337;412	y	ENSMUSG00000025075.15	Habp2	chr19	protein_coding	hyaluronic acid binding protein 2
known_NIR_9910	chr19	56299653	56300210	+	56299653	56300103	A3SS	ENSMUST00000078284.13	known	0.05	14	277	14	277	y	0.09	27	279	27	279	y	0.04	10	264	10	264	y	0.07	29	388	29	388	y	0.07	32	400	32	400	y	0.03	5	142	5	142	y	0.06	19	289	19	289	y	0.05	13	225	13	225	y	0.07	19	263	19	263	y	0.06	24	411	24	411	y	0.11	26	215	26	215	y	0.05	23	455	23	455	y	ENSMUSG00000025075.15	Habp2	chr19	protein_coding	hyaluronic acid binding protein 2
known_NIR_9911	chr19	56302662	56304715	+	56302662;56303801	56303659;56304715	ES	ENSMUST00000078284.13	known	0.02	7	335.5	7	347;324	y	0.01	3	320.0	3	310;330	y	0.00	1	307.0	1	331;283	n	0.01	4	391.0	4	436;346	y	0.00	0	438.0	0	501;375	n	0.00	0	181.5	0	191;172	n	0.01	4	396.0	4	394;398	y	0.01	2	269.0	2	282;256	y	0.00	0	315.5	0	327;304	n	0.01	6	474.5	6	511;438	y	0.00	0	294.5	0	282;307	n	0.01	3	474.0	3	515;433	y	ENSMUSG00000025075.15	Habp2	chr19	protein_coding	hyaluronic acid binding protein 2
known_NIR_9912	chr19	56361346;56362900	56362796;56366487	-	56361346	56366487	cassetteExon	ENSMUST00000167239.8	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.30	20.5	47	15;26	47	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000049134.16	Nrap	chr19	protein_coding	nebulin-related anchoring protein
known_NIR_9913	chr19	56377268	56378238	-	56377268;56377916	56377822;56378238	ES	ENSMUST00000167239.8	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.03	2	73.0	2	79;67	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000049134.16	Nrap	chr19	protein_coding	nebulin-related anchoring protein
known_NIR_9914	chr19	56392957	56396785	+	56392957	56421674	A3SS	ENSMUST00000026062.10	known	0.07	3	40	3	40	y	0.13	4	27	4	27	y	0.14	6	37	6	37	y	0.06	4	59	4	59	y	0.12	8	61	8	61	y	0.19	5	22	5	22	y	0.09	5	53	5	53	y	0.15	4	22	4	22	y	0.05	3	53	3	53	y	0.06	4	67	4	67	y	0.18	7	32	7	32	y	0.10	6	56	6	56	y	ENSMUSG00000025076.13	Casp7	chr19	protein_coding	caspase 7
known_NIR_9915	chr19	5652597	5652834	+	5652597	5652852	A3SS	ENSMUST00000025864.11	known	0.00	0	264	0	264	n	0.00	0	227	0	227	n	0.00	0	125	0	125	n	0.00	0	196	0	196	n	0.00	0	249	0	249	n	0.00	0	91	0	91	n	0.01	2	265	2	265	y	0.00	0	111	0	111	n	0.00	0	197	0	197	n	0.01	2	339	2	339	y	0.00	0	281	0	281	n	0.00	0	273	0	273	n	ENSMUSG00000024925.12	Rnaseh2c	chr19	protein_coding	ribonuclease H2, subunit C
known_NIR_9916	chr19	56528723	56529937	-	56528754	56529937	A3SS	ENSMUST00000183143.8	known	0.29	5	12	5	12	y	0.05	1	19	1	19	n	0.08	1	11	1	11	n	0.07	1	13	1	13	n	0.05	1	18	1	18	n	0.00	0	13	0	13	n	0.14	3	18	3	18	y	0.00	0	13	0	13	n	0.05	1	18	1	18	n	0.11	2	16	2	16	y	0.29	4	10	4	10	y	0.10	2	19	2	19	y	ENSMUSG00000025077.14	Dclre1a	chr19	protein_coding	DNA cross-link repair 1A
known_NIR_9917	chr19	56534078	56535069	-	56533339	56535069	A3SS	ENSMUST00000183143.8	known	1.00	6	0	6	0	n	1.00	13	0	13	0	n	1.00	18	0	18	0	n	1.00	11	0	11	0	n	0.94	16	1	16	1	n	1.00	8	0	8	0	n	1.00	5	0	5	0	n	0.79	11	3	11	3	y	1.00	10	0	10	0	n	0.91	10	1	10	1	n	1.00	8	0	8	0	n	1.00	13	0	13	0	n	ENSMUSG00000025077.14	Dclre1a	chr19	protein_coding	DNA cross-link repair 1A
known_NIR_9918	chr19	56536135	56536406	-	56536135	56536619	A5SS	ENSMUST00000182276.2	known	0.67	8	4	8	4	y	1.00	3	0	3	0	n	0.75	3	1	3	1	n	1.00	3	0	3	0	n	0.89	8	1	8	1	n	1.00	3	0	3	0	n	1.00	6	0	6	0	n	1.00	3	0	3	0	n	1.00	3	0	3	0	n	1.00	12	0	12	0	n	1.00	2	0	2	0	n	0.88	7	1	7	1	n	ENSMUSG00000025077.14	Dclre1a	chr19	protein_coding	DNA cross-link repair 1A
known_NIR_9919	chr19	56559303	56563249	+	56559303	56563190	A3SS	ENSMUST00000071423.7	known	0.11	2	16	2	16	y	0.00	0	16	0	16	n	0.08	3	33	3	33	y	0.15	3	17	3	17	y	0.08	2	24	2	24	y	0.31	4	9	4	9	y	0.13	3	20	3	20	y	0.22	2	7	2	7	n	0.00	0	13	0	13	n	0.12	3	23	3	23	y	0.00	0	15	0	15	n	0.04	1	23	1	23	n	ENSMUSG00000025078.10	Nhlrc2	chr19	protein_coding	NHL repeat containing 2
known_NIR_9920	chr19	5657983	5658283	-	5657992	5658283	A3SS	ENSMUST00000236883.2	known	0.00	0	25	0	25	n	0.00	0	31	0	31	n	0.00	0	44	0	44	n	0.00	0	31	0	31	n	0.00	0	48	0	48	n	0.12	2	15	2	15	y	0.00	0	38	0	38	n	0.00	0	10	0	10	n	0.00	0	37	0	37	n	0.00	0	34	0	34	n	0.00	0	23	0	23	n	0.00	0	39	0	39	n	ENSMUSG00000024926.11	Kat5	chr19	protein_coding	K(lysine) acetyltransferase 5
known_NIR_9921	chr19	5658740	5659264	-	5658740;5658985	5658830;5659264	ES	ENSMUST00000236883.2	known	0.67	16	8.0	16	8;8	y	0.52	13	12.0	13	11;13	y	0.58	19	14.0	19	20;8	y	0.64	18	10.0	18	8;12	y	0.62	16	10.0	16	11;9	y	0.51	10	9.5	10	11;8	y	0.66	23	12.0	23	11;13	y	0.54	7	6.0	7	6;6	y	0.57	15	11.5	15	12;11	y	0.82	31	7.0	31	7;7	y	0.61	14	9.0	14	5;13	y	0.65	22	12.0	22	11;13	y	ENSMUSG00000024926.11	Kat5	chr19	protein_coding	K(lysine) acetyltransferase 5
known_NIR_9922	chr19	5658740	5659264	-	5659012	5659264	3pMXE	ENSMUST00000236264.2	known	1.00	16	0	16	0	n	1.00	13	0	13	0	n	1.00	19	0	19	0	n	0.95	18	1	18	1	n	1.00	16	0	16	0	n	0.91	10	1	10	1	n	1.00	23	0	23	0	n	0.88	7	1	7	1	n	0.94	15	1	15	1	n	1.00	31	0	31	0	n	0.88	14	2	14	2	y	1.00	22	0	22	0	n	ENSMUSG00000024926.11	Kat5	chr19	protein_coding	K(lysine) acetyltransferase 5
known_NIR_9923	chr19	5658740;5659012	5658830;5659264	-	5658740	5659264	cassetteExon	ENSMUST00000236964.2	known	0.20	4.0	16	8;0	16	n	0.30	5.5	13	11;0	13	n	0.34	10.0	19	20;0	19	n	0.20	4.5	18	8;1	18	n	0.26	5.5	16	11;0	16	n	0.38	6.0	10	11;1	10	n	0.19	5.5	23	11;0	23	n	0.33	3.5	7	6;1	7	n	0.30	6.5	15	12;1	15	n	0.10	3.5	31	7;0	31	n	0.20	3.5	14	5;2	14	y	0.20	5.5	22	11;0	22	n	ENSMUSG00000024926.11	Kat5	chr19	protein_coding	K(lysine) acetyltransferase 5
known_NIR_9924	chr19	5659012	5659264	-	5658985	5659264	A3SS	ENSMUST00000236883.2	known	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.08	1	12	1	12	n	0.00	0	9	0	9	n	0.11	1	8	1	8	n	0.00	0	13	0	13	n	0.14	1	6	1	6	n	0.08	1	11	1	11	n	0.00	0	7	0	7	n	0.13	2	13	2	13	y	0.00	0	13	0	13	n	ENSMUSG00000024926.11	Kat5	chr19	protein_coding	K(lysine) acetyltransferase 5
known_NIR_9925	chr19	5688176	5688460	+	5687869	5688460	A5SS	ENSMUST00000025867.6	known	0.04	2	55	2	55	y	0.00	0	41	0	41	n	0.02	2	117	2	117	y	0.00	0	84	0	84	n	0.00	0	97	0	97	n	0.02	1	61	1	61	n	0.00	0	79	0	79	n	0.02	1	45	1	45	n	0.02	1	45	1	45	n	0.02	2	79	2	79	y	0.00	0	63	0	63	n	0.00	0	81	0	81	n	ENSMUSG00000024927.9	Rela	chr19	protein_coding	v-rel reticuloendotheliosis viral oncogene homolog A (avian)
known_NIR_9926	chr19	5688176	5688579	+	5688486	5688579	A5SS&ES	ENSMUST00000025867.6	known	0.00	0	67	0	67	n	0.00	0	48	0	48	n	0.00	0	135	0	135	n	0.02	2	91	2	91	y	0.00	0	107	0	107	n	0.00	0	70	0	70	n	0.00	0	95	0	95	n	0.00	0	59	0	59	n	0.00	0	63	0	63	n	0.00	0	93	0	93	n	0.00	0	72	0	72	n	0.00	0	84	0	84	n	ENSMUSG00000024927.9	Rela	chr19	protein_coding	v-rel reticuloendotheliosis viral oncogene homolog A (avian)
known_NIR_9927	chr19	5695615;5696726	5696622;5696828	+	5695615	5696828	cassetteExon	ENSMUST00000025867.6	known	0.01	1.5	112	0;3	112	n	0.00	0.0	128	0;0	128	n	0.01	2.0	157	2;2	157	y	0.00	0.0	116	0;0	116	n	0.01	1.5	126	0;3	126	n	0.00	0.0	66	0;0	66	n	0.01	1.0	119	0;2	119	n	0.00	0.0	63	0;0	63	n	0.00	0.0	73	0;0	73	n	0.00	0.0	139	0;0	139	n	0.01	1.0	120	0;2	120	n	0.01	1.0	125	0;2	125	n	ENSMUSG00000024927.9	Rela	chr19	protein_coding	v-rel reticuloendotheliosis viral oncogene homolog A (avian)
known_NIR_9928	chr19	5702767	5704027	-	5702901	5704027	A3SS	ENSMUST00000169854.2	known	0.00	0	12	0	12	n	0.09	1	10	1	10	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.15	2	11	2	11	y	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	19	0	19	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	ENSMUSG00000056917.14	Sipa1	chr19	protein_coding	signal-induced proliferation associated gene 1
known_NIR_9929	chr19	57030403	57031429	-	57030407	57031429	A3SS	ENSMUST00000079360.12	known	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.00	0	28	0	28	n	0.00	0	28	0	28	n	0.00	0	33	0	33	n	0.00	0	6	0	6	n	0.00	0	24	0	24	n	0.00	0	7	0	7	n	0.00	0	18	0	18	n	0.04	1	24	1	24	n	0.11	3	24	3	24	y	0.00	0	35	0	35	n	ENSMUSG00000025085.17	Ablim1	chr19	protein_coding	actin-binding LIM protein 1
known_NIR_9930	chr19	57033404	57037894	-	57033404	57035357	5pMXE	ENSMUST00000137389.8	known	0.00	0	19	0	19	n	0.00	0	15	0	15	n	0.23	5	17	5	17	y	0.00	0	23	0	23	n	0.03	1	38	1	38	n	0.00	0	14	0	14	n	0.05	1	21	1	21	n	0.08	1	11	1	11	n	0.00	0	11	0	11	n	0.14	3	19	3	19	y	0.05	1	21	1	21	n	0.03	1	28	1	28	n	ENSMUSG00000025085.17	Ablim1	chr19	protein_coding	actin-binding LIM protein 1
known_NIR_9931	chr19	57033404	57037894	-	57033404;57035497	57035357;57037894	ES	ENSMUST00000079360.12	known	0.00	0	13.0	0	19;7	n	0.00	0	15.0	0	15;15	n	0.29	5	12.5	5	17;8	y	0.00	0	25.5	0	23;28	n	0.03	1	28.0	1	38;18	n	0.00	0	9.5	0	14;5	n	0.05	1	19.0	1	21;17	n	0.08	1	12.0	1	11;13	n	0.00	0	11.0	0	11;11	n	0.14	3	18.0	3	19;17	y	0.06	1	15.0	1	21;9	n	0.03	1	30.5	1	28;33	n	ENSMUSG00000025085.17	Ablim1	chr19	protein_coding	actin-binding LIM protein 1
known_NIR_9932	chr19	57033404;57035503	57035357;57037894	-	57033404	57037894	cassetteExon	ENSMUST00000099294.9	known	1.00	10.5	0	19;2	0	n	1.00	9.5	0	15;4	0	n	0.74	14.0	5	17;11	5	y	1.00	12.5	0	23;2	0	n	0.96	25.5	1	38;13	1	n	1.00	11.0	0	14;8	0	n	0.92	12.0	1	21;3	1	n	0.88	7.0	1	11;3	1	n	1.00	8.5	0	11;6	0	n	0.84	15.5	3	19;12	3	y	0.93	13.5	1	21;6	1	n	0.95	19.0	1	28;10	1	n	ENSMUSG00000025085.17	Ablim1	chr19	protein_coding	actin-binding LIM protein 1
known_NIR_9933	chr19	57035503	57037894	-	57035497	57037894	A3SS	ENSMUST00000079360.12	known	0.22	2	7	2	7	n	0.21	4	15	4	15	y	0.58	11	8	11	8	y	0.07	2	28	2	28	y	0.42	13	18	13	18	y	0.62	8	5	8	5	y	0.15	3	17	3	17	y	0.19	3	13	3	13	y	0.35	6	11	6	11	y	0.41	12	17	12	17	y	0.40	6	9	6	9	y	0.23	10	33	10	33	y	ENSMUSG00000025085.17	Ablim1	chr19	protein_coding	actin-binding LIM protein 1
known_NIR_9934	chr19	57057369	57068245	-	57065929	57068245	3pMXE	ENSMUST00000134430.8	known	1.00	11	0	11	0	n	1.00	7	0	7	0	n	1.00	18	0	18	0	n	1.00	24	0	24	0	n	1.00	23	0	23	0	n	1.00	12	0	12	0	n	0.93	13	1	13	1	n	1.00	7	0	7	0	n	1.00	10	0	10	0	n	0.88	14	2	14	2	y	1.00	15	0	15	0	n	0.94	30	2	30	2	y	ENSMUSG00000025085.17	Ablim1	chr19	protein_coding	actin-binding LIM protein 1
known_NIR_9935	chr19	57072035	57107184	-	57072035	57121294	A5SS	ENSMUST00000079360.12	known	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	15	0	15	n	0.00	0	18	0	18	n	0.00	0	23	0	23	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.11	2	17	2	17	y	0.00	0	16	0	16	n	0.00	0	10	0	10	n	0.06	2	31	2	31	y	ENSMUSG00000025085.17	Ablim1	chr19	protein_coding	actin-binding LIM protein 1
known_NIR_9936	chr19	5711139	5713632	-	5711139	5711624	5pMXE	ENSMUST00000236006.2	known	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.50	2	2	2	2	n	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.40	4	6	4	6	y	0.00	0	3	0	3	n	0.60	3	2	3	2	n	ENSMUSG00000056917.14	Sipa1	chr19	protein_coding	signal-induced proliferation associated gene 1
known_NIR_9937	chr19	57119419	57121294	-	57072035	57121294	A3SS	ENSMUST00000079360.12	known	0.08	1	12	1	12	n	0.00	0	8	0	8	n	0.12	2	15	2	15	y	0.00	0	18	0	18	n	0.00	0	23	0	23	n	0.12	1	7	1	7	n	0.06	1	15	1	15	n	0.18	2	9	2	9	y	0.06	1	17	1	17	n	0.06	1	16	1	16	n	0.09	1	10	1	10	n	0.06	2	31	2	31	y	ENSMUSG00000025085.17	Ablim1	chr19	protein_coding	actin-binding LIM protein 1
known_NIR_9938	chr19	57161891	57170658	-	57161891	57185731	A5SS	ENSMUST00000099294.9	known	0.82	14	3	14	3	y	0.80	12	3	12	3	y	0.55	6	5	6	5	y	0.61	11	7	11	7	y	0.69	9	4	9	4	y	0.00	0	2	0	2	n	0.63	17	10	17	10	y	0.67	4	2	4	2	n	0.50	10	10	10	10	y	0.68	17	8	17	8	y	0.67	8	4	8	4	y	0.83	20	4	20	4	y	ENSMUSG00000025085.17	Ablim1	chr19	protein_coding	actin-binding LIM protein 1
known_NIR_9939	chr19	57161891	57170658	-	57161891	57303125	A5SS	ENSMUST00000156316.8	known	1.00	14	0	14	0	n	0.86	12	2	12	2	y	0.38	6	10	6	10	y	0.85	11	2	11	2	y	0.60	9	6	9	6	y	0.00	0	2	0	2	n	0.89	17	2	17	2	y	0.57	4	3	4	3	n	1.00	10	0	10	0	n	0.89	17	2	17	2	y	0.73	8	3	8	3	y	0.74	20	7	20	7	y	ENSMUSG00000025085.17	Ablim1	chr19	protein_coding	actin-binding LIM protein 1
known_NIR_9940	chr19	57161891	57303125	-	57161891	57185731	5pMXE	ENSMUST00000099294.9	known	0.00	0	3	0	3	n	0.40	2	3	2	3	n	0.67	10	5	10	5	y	0.22	2	7	2	7	n	0.60	6	4	6	4	y	0.50	2	2	2	2	n	0.17	2	10	2	10	y	0.60	3	2	3	2	n	0.00	0	10	0	10	n	0.20	2	8	2	8	y	0.43	3	4	3	4	n	0.64	7	4	7	4	y	ENSMUSG00000025085.17	Ablim1	chr19	protein_coding	actin-binding LIM protein 1
known_NIR_9941	chr19	5731581	5733335	-	5731581	5733305	A5SS	ENSMUST00000113615.9	known	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.06	1	15	1	15	n	0.41	7	10	7	10	y	0.20	3	12	3	12	y	0.18	2	9	2	9	y	0.29	2	5	2	5	n	0.08	1	11	1	11	n	0.00	0	4	0	4	n	0.19	5	22	5	22	y	0.17	2	10	2	10	y	0.26	7	20	7	20	y	ENSMUSG00000054874.13	Pcnx3	chr19	protein_coding	pecanex homolog 3
known_NIR_9942	chr19	5731620	5733305	-	5731581	5733305	A3SS	ENSMUST00000113615.9	known	0.00	0	5	0	5	n	0.18	2	9	2	9	y	0.35	8	15	8	15	y	0.23	3	10	3	10	y	0.48	11	12	11	12	y	0.36	5	9	5	9	y	0.55	6	5	6	5	y	0.27	4	11	4	11	y	0.60	6	4	6	4	y	0.29	9	22	9	22	y	0.23	3	10	3	10	y	0.29	8	20	8	20	y	ENSMUSG00000054874.13	Pcnx3	chr19	protein_coding	pecanex homolog 3
known_NIR_9943	chr19	5739294	5739505	+	5738858	5739505	A5SS	ENSMUST00000235727.2	known	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.17	1	5	1	5	n	0.15	2	11	2	11	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	ENSMUSG00000004054.10	Map3k11	chr19	protein_coding	mitogen-activated protein kinase kinase kinase 11
known_NIR_9944	chr19	5743049	5745189	+	5741016	5745189	A5SS	ENSMUST00000004156.10	known	0.00	0	74	0	74	n	0.02	1	49	1	49	n	0.00	0	115	0	115	n	0.00	0	76	0	76	n	0.01	1	108	1	108	n	0.00	0	53	0	53	n	0.00	0	100	0	100	n	0.03	2	66	2	66	y	0.00	0	66	0	66	n	0.01	1	84	1	84	n	0.00	0	89	0	89	n	0.01	1	74	1	74	n	ENSMUSG00000004054.10	Map3k11	chr19	protein_coding	mitogen-activated protein kinase kinase kinase 11
known_NIR_9945	chr19	57441628	57452802	+	57441628;57446620	57446522;57452802	ES	ENSMUST00000026073.14	known	0.16	4	20.5	4	18;23	y	0.08	2	24.0	2	25;23	y	0.14	3	19.0	3	14;24	y	0.04	1	23.0	1	24;22	n	0.05	2	38.5	2	43;34	y	0.00	0	9.0	0	8;10	n	0.08	2	22.5	2	21;24	y	0.00	0	12.5	0	14;11	n	0.05	1	20.5	1	19;22	n	0.05	2	42.0	2	43;41	y	0.07	2	26.0	2	20;32	y	0.00	0	34.0	0	32;36	n	ENSMUSG00000025086.14	Trub1	chr19	protein_coding	TruB pseudouridine (psi) synthase family member 1
known_NIR_9946	chr19	57473644	57473784	+	57473644	57475697	A3SS	ENSMUST00000026073.14	known	0.10	3	26	3	26	y	0.15	3	17	3	17	y	0.10	2	19	2	19	y	0.00	0	23	0	23	n	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.30	9	21	9	21	y	0.17	1	5	1	5	n	0.09	2	20	2	20	y	0.07	2	25	2	25	y	0.05	1	20	1	20	n	0.14	3	19	3	19	y	ENSMUSG00000025086.14	Trub1	chr19	protein_coding	TruB pseudouridine (psi) synthase family member 1
known_NIR_9947	chr19	5760397	5760602	-	5760338	5760602	A3SS	ENSMUST00000049295.15	known	0.00	0	21	0	21	n	0.00	0	23	0	23	n	0.10	2	19	2	19	y	0.00	0	14	0	14	n	0.00	0	30	0	30	n	0.00	0	15	0	15	n	0.00	0	34	0	34	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	18	0	18	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	ENSMUSG00000024937.16	Ehbp1l1	chr19	protein_coding	EH domain binding protein 1-like 1
known_NIR_9948	chr19	5767224	5770213	-	5767224	5767690	A5SS	ENSMUST00000049295.15	known	0.71	5	2	5	2	n	0.22	2	7	2	7	n	0.00	0	6	0	6	n	0.29	2	5	2	5	n	0.46	6	7	6	7	y	0.50	1	1	1	1	n	0.14	2	12	2	12	y	0.38	3	5	3	5	n	0.00	0	2	0	2	n	0.67	2	1	2	1	n	1.00	3	0	3	0	n	0.00	0	2	0	2	n	ENSMUSG00000024937.16	Ehbp1l1	chr19	protein_coding	EH domain binding protein 1-like 1
known_NIR_9949	chr19	5767224	5770213	-	5767224	5770714	A5SS	ENSMUST00000075606.6	known	0.56	5	4	5	4	n	1.00	2	0	2	0	n	0.00	0	1	0	1	n	0.50	2	2	2	2	n	0.50	6	6	6	6	y	1.00	1	0	1	0	n	0.25	2	6	2	6	n	0.75	3	1	3	1	n	0.00	0	2	0	2	n	0.33	2	4	2	4	n	0.33	3	6	3	6	n	0.00	0	3	0	3	n	ENSMUSG00000024937.16	Ehbp1l1	chr19	protein_coding	EH domain binding protein 1-like 1
known_NIR_9950	chr19	5767224	5770714	-	5767224	5767690	A5SS&ES	ENSMUST00000049295.15	known	0.67	4	2	4	2	n	0.00	0	7	0	7	n	0.14	1	6	1	6	n	0.29	2	5	2	5	n	0.46	6	7	6	7	y	0.00	0	1	0	1	n	0.33	6	12	6	12	y	0.17	1	5	1	5	n	0.50	2	2	2	2	n	0.80	4	1	4	1	n	1.00	6	0	6	0	n	0.60	3	2	3	2	n	ENSMUSG00000024937.16	Ehbp1l1	chr19	protein_coding	EH domain binding protein 1-like 1
known_NIR_9951	chr19	5770905;5771035	5771000;5771470	-	5770905	5771470	cassetteExon	ENSMUST00000049295.15	known	0.00	0.0	18	0;0	18	n	0.00	0.0	10	0;0	10	n	0.00	0.0	18	0;0	18	n	0.00	0.0	11	0;0	11	n	0.00	0.0	27	0;0	27	n	0.00	0.0	7	0;0	7	n	0.45	14.5	18	11;18	18	y	0.00	0.0	9	0;0	9	n	0.00	0.0	9	0;0	9	n	0.00	0.0	12	0;0	12	n	0.00	0.0	9	0;0	9	n	0.00	0.0	16	0;0	16	n	ENSMUSG00000024937.16	Ehbp1l1	chr19	protein_coding	EH domain binding protein 1-like 1
known_NIR_9952	chr19	5778857	5779265	-	5778896	5779265	A3SS	ENSMUST00000099955.4	known	0.05	2	37	2	37	y	0.10	3	26	3	26	y	0.23	7	24	7	24	y	0.05	2	35	2	35	y	0.05	2	39	2	39	y	0.15	2	11	2	11	y	0.06	3	45	3	45	y	0.17	4	19	4	19	y	0.05	2	37	2	37	y	0.09	6	58	6	58	y	0.12	4	29	4	29	y	0.07	3	41	3	41	y	ENSMUSG00000024939.7	Fam89b	chr19	protein_coding	family with sequence similarity 89, member B
known_NIR_9953	chr19	5778857	5779265	-	5778906	5779265	A3SS	ENSMUST00000116558.3	known	0.20	2	8	2	8	y	0.38	3	5	3	5	n	0.64	7	4	7	4	y	0.67	2	1	2	1	n	0.29	2	5	2	5	n	0.40	2	3	2	3	n	0.27	3	8	3	8	y	1.00	4	0	4	0	n	0.29	2	5	2	5	n	0.55	6	5	6	5	y	0.36	4	7	4	7	y	0.21	3	11	3	11	y	ENSMUSG00000024939.7	Fam89b	chr19	protein_coding	family with sequence similarity 89, member B
known_NIR_9954	chr19	5778896	5779265	-	5778906	5779265	A3SS	ENSMUST00000116558.3	known	0.82	37	8	37	8	y	0.84	26	5	26	5	y	0.86	24	4	24	4	y	0.97	35	1	35	1	n	0.89	39	5	39	5	y	0.79	11	3	11	3	y	0.85	45	8	45	8	y	1.00	19	0	19	0	n	0.88	37	5	37	5	y	0.92	58	5	58	5	y	0.81	29	7	29	7	y	0.79	41	11	41	11	y	ENSMUSG00000024939.7	Fam89b	chr19	protein_coding	family with sequence similarity 89, member B
known_NIR_9955	chr19	5780740	5781162	-	5780740	5781269	A5SS	ENSMUST00000160852.8	known	0.00	0	101	0	101	n	0.04	3	81	3	81	y	0.03	3	90	3	90	y	0.02	1	62	1	62	n	0.00	0	101	0	101	n	0.00	0	79	0	79	n	0.02	2	102	2	102	y	0.00	0	48	0	48	n	0.01	1	74	1	74	n	0.01	1	104	1	104	n	0.00	0	97	0	97	n	0.01	1	81	1	81	n	ENSMUSG00000118125.2	Gm50387	chr19	protein_coding	predicted gene, 50387
known_NIR_9956	chr19	5781353	5781467	-	5781353	5781472	A5SS	ENSMUST00000160852.8	known	0.09	8	83	8	83	y	0.11	7	58	7	58	y	0.23	20	67	20	67	y	0.17	11	55	11	55	y	0.09	8	82	8	82	y	0.07	4	57	4	57	y	0.17	18	85	18	85	y	0.20	8	32	8	32	y	0.10	7	60	7	60	y	0.12	9	69	9	69	y	0.13	11	74	11	74	y	0.08	5	57	5	57	y	ENSMUSG00000118125.2	Gm50387	chr19	protein_coding	predicted gene, 50387
known_NIR_9957	chr19	5806959;5807203	5807063;5807339	+	5806959	5807339	cassetteExon	ENSMUST00000081496.6	known	0.00	0.0	3	0;0	3	n	0.00	0.0	3	0;0	3	n	0.00	0.0	2	0;0	2	n	0.00	0.0	2	0;0	2	n	0.16	1.5	8	1;2	8	n	0.11	0.5	4	1;0	4	n	0.24	3.5	11	2;5	11	y	-	-	-	-	-	-	0.00	0.0	3	0;0	3	n	0.00	0.0	5	0;0	5	n	0.00	0.0	1	0;0	1	n	0.00	0.0	4	0;0	4	n	ENSMUSG00000024940.12	Ltbp3	chr19	protein_coding	latent transforming growth factor beta binding protein 3
known_NIR_9958	chr19	5809367	5809693	-	5809370	5809693	A3SS	ENSMUST00000236978.2	known	0.13	12	82	12	82	y	0.08	10	116	10	116	y	0.07	7	94	7	94	y	0.09	7	70	7	70	y	0.02	3	126	3	126	y	0.05	4	69	4	69	y	0.08	9	103	9	103	y	0.11	7	57	7	57	y	0.11	9	72	9	72	y	0.11	14	110	14	110	y	0.11	12	93	12	93	y	0.06	5	78	5	78	y	ENSMUSG00000024941.10	Scyl1	chr19	protein_coding	SCY1-like 1 (S. cerevisiae)
known_NIR_9959	chr19	5809781	5810009	-	5809832	5810009	A3SS	ENSMUST00000236978.2	known	0.05	4	82	4	82	y	0.08	8	94	8	94	y	0.07	8	109	8	109	y	0.07	5	70	5	70	y	0.07	10	129	10	129	y	0.02	1	57	1	57	n	0.03	3	95	3	95	y	0.07	4	51	4	51	y	0.07	5	64	5	64	y	0.11	11	91	11	91	y	0.05	5	102	5	102	y	0.09	8	79	8	79	y	ENSMUSG00000024941.10	Scyl1	chr19	protein_coding	SCY1-like 1 (S. cerevisiae)
known_NIR_9960	chr19	5819839	5820345	-	5819839	5820231	A5SS	ENSMUST00000236978.2	known	0.03	2	75	2	75	y	0.00	0	70	0	70	n	0.00	0	86	0	86	n	0.00	0	78	0	78	n	0.00	0	106	0	106	n	0.00	0	73	0	73	n	0.00	0	78	0	78	n	0.04	3	70	3	70	y	0.00	0	73	0	73	n	0.00	0	92	0	92	n	0.00	0	77	0	77	n	0.00	0	74	0	74	n	ENSMUSG00000024941.10	Scyl1	chr19	protein_coding	SCY1-like 1 (S. cerevisiae)
known_NIR_9961	chr19	5820580	5820671	-	5820580	5820751	A5SS	ENSMUST00000236978.2	known	0.02	1	61	1	61	n	0.00	0	52	0	52	n	0.00	0	116	0	116	n	0.00	0	93	0	93	n	0.04	3	82	3	82	y	0.00	0	61	0	61	n	0.00	0	71	0	71	n	0.00	0	66	0	66	n	0.00	0	57	0	57	n	0.01	1	103	1	103	n	0.00	0	70	0	70	n	0.00	0	73	0	73	n	ENSMUSG00000024941.10	Scyl1	chr19	protein_coding	SCY1-like 1 (S. cerevisiae)
known_NIR_9962	chr19	58289010	58440401	-	58289010;58381019	58381005;58440401	ES	ENSMUST00000026076.14	known	0.65	139	76.5	139	72;81	y	0.59	91	63.5	91	61;66	y	0.51	174	166.5	174	158;175	y	0.66	203	106.0	203	106;106	y	0.66	298	153.0	298	150;156	y	0.59	161	110.0	161	104;116	y	0.66	184	95.5	184	97;94	y	0.70	182	79.0	182	83;75	y	0.61	95	60.5	95	59;62	y	0.64	163	92.0	163	91;93	y	0.76	111	36.0	111	35;37	y	0.64	183	102.5	183	97;108	y	ENSMUSG00000025089.16	Gfra1	chr19	protein_coding	glial cell line derived neurotrophic factor family receptor alpha 1
known_NIR_9963	chr19	58443026	58443306	-	58443026	58443630	A5SS	ENSMUST00000026076.14	known	0.06	3	44	3	44	y	0.00	0	28	0	28	n	0.00	0	86	0	86	n	0.00	0	98	0	98	n	0.01	1	80	1	80	n	0.04	2	55	2	55	y	0.02	1	46	1	46	n	0.00	0	40	0	40	n	0.00	0	21	0	21	n	0.00	0	54	0	54	n	0.05	1	19	1	19	n	0.04	2	47	2	47	y	ENSMUSG00000025089.16	Gfra1	chr19	protein_coding	glial cell line derived neurotrophic factor family receptor alpha 1
known_NIR_9964	chr19	58443026	58443453	-	58443026	58443630	A5SS	ENSMUST00000026076.14	known	0.00	0	44	0	44	n	0.12	4	28	4	28	y	0.02	2	86	2	86	y	0.00	0	98	0	98	n	0.05	4	80	4	80	y	0.05	3	55	3	55	y	0.06	3	46	3	46	y	0.11	5	40	5	40	y	0.00	0	21	0	21	n	0.07	4	54	4	54	y	0.05	1	19	1	19	n	0.06	3	47	3	47	y	ENSMUSG00000025089.16	Gfra1	chr19	protein_coding	glial cell line derived neurotrophic factor family receptor alpha 1
known_NIR_9965	chr19	58443026	58443453	-	58443026	58443893	A5SS	ENSMUST00000131877.2	known	0.00	0	19	0	19	n	0.24	4	13	4	13	y	0.04	2	43	2	43	y	0.00	0	29	0	29	n	0.08	4	44	4	44	y	0.13	3	20	3	20	y	0.09	3	29	3	29	y	0.11	5	42	5	42	y	0.00	0	5	0	5	n	0.25	4	12	4	12	y	0.11	1	8	1	8	n	0.14	3	18	3	18	y	ENSMUSG00000025089.16	Gfra1	chr19	protein_coding	glial cell line derived neurotrophic factor family receptor alpha 1
known_NIR_9966	chr19	58443026	58443679	-	58443026	58443630	A5SS	ENSMUST00000026076.14	known	0.00	0	44	0	44	n	0.00	0	28	0	28	n	0.00	0	86	0	86	n	0.01	1	98	1	98	n	0.04	3	80	3	80	y	0.00	0	55	0	55	n	0.00	0	46	0	46	n	0.00	0	40	0	40	n	0.00	0	21	0	21	n	0.00	0	54	0	54	n	0.00	0	19	0	19	n	0.00	0	47	0	47	n	ENSMUSG00000025089.16	Gfra1	chr19	protein_coding	glial cell line derived neurotrophic factor family receptor alpha 1
known_NIR_9967	chr19	58443026	58443893	-	58443026	58443306	5pMXE	ENSMUST00000138530.8	known	0.86	19	3	19	3	y	1.00	13	0	13	0	n	1.00	43	0	43	0	n	1.00	29	0	29	0	n	0.98	44	1	44	1	n	0.91	20	2	20	2	y	0.97	29	1	29	1	n	1.00	42	0	42	0	n	1.00	5	0	5	0	n	1.00	12	0	12	0	n	0.89	8	1	8	1	n	0.90	18	2	18	2	y	ENSMUSG00000025089.16	Gfra1	chr19	protein_coding	glial cell line derived neurotrophic factor family receptor alpha 1
known_NIR_9968	chr19	58443026	58443893	-	58443026	58443630	5pMXE	ENSMUST00000026076.14	known	0.30	19	44	19	44	y	0.32	13	28	13	28	y	0.33	43	86	43	86	y	0.23	29	98	29	98	y	0.35	44	80	44	80	y	0.27	20	55	20	55	y	0.39	29	46	29	46	y	0.51	42	40	42	40	y	0.19	5	21	5	21	y	0.18	12	54	12	54	y	0.30	8	19	8	19	y	0.28	18	47	18	47	y	ENSMUSG00000025089.16	Gfra1	chr19	protein_coding	glial cell line derived neurotrophic factor family receptor alpha 1
known_NIR_9969	chr19	58443026	58443893	-	58443026	58443679	5pMXE	ENSMUST00000152507.8	known	1.00	19	0	19	0	n	1.00	13	0	13	0	n	1.00	43	0	43	0	n	0.97	29	1	29	1	n	0.94	44	3	44	3	y	1.00	20	0	20	0	n	1.00	29	0	29	0	n	1.00	42	0	42	0	n	1.00	5	0	5	0	n	1.00	12	0	12	0	n	1.00	8	0	8	0	n	1.00	18	0	18	0	n	ENSMUSG00000025089.16	Gfra1	chr19	protein_coding	glial cell line derived neurotrophic factor family receptor alpha 1
known_NIR_9970	chr19	58963640	58978621	-	58963640	58988325	A5SS	ENSMUST00000163821.3	known	0.97	64	2	64	2	y	1.00	41	0	41	0	n	1.00	94	0	94	0	n	1.00	73	0	73	0	n	1.00	118	0	118	0	n	1.00	49	0	49	0	n	1.00	81	0	81	0	n	1.00	47	0	47	0	n	1.00	53	0	53	0	n	1.00	72	0	72	0	n	1.00	59	0	59	0	n	1.00	94	0	94	0	n	ENSMUSG00000041362.18	Shtn1	chr19	protein_coding	shootin 1
known_NIR_9971	chr19	58983570	58988325	-	58963640	58988325	A3SS	ENSMUST00000163821.3	known	0.97	61	2	61	2	y	1.00	38	0	38	0	n	1.00	87	0	87	0	n	1.00	52	0	52	0	n	1.00	84	0	84	0	n	1.00	34	0	34	0	n	1.00	68	0	68	0	n	1.00	41	0	41	0	n	1.00	33	0	33	0	n	1.00	88	0	88	0	n	1.00	49	0	49	0	n	1.00	82	0	82	0	n	ENSMUSG00000041362.18	Shtn1	chr19	protein_coding	shootin 1
known_NIR_9972	chr19	5924836	5925119	-	5924822	5925119	A3SS	ENSMUST00000025728.13	known	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.00	0	25	0	25	n	0.07	1	14	1	14	n	0.04	1	25	1	25	n	0.14	1	6	1	6	n	0.06	1	15	1	15	n	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.06	1	17	1	17	n	0.07	1	13	1	13	n	0.08	2	23	2	23	y	ENSMUSG00000024816.13	Frmd8	chr19	protein_coding	FERM domain containing 8
known_NIR_9973	chr19	5930188	5930468	+	5930184	5930468	A5SS	ENSMUST00000145200.8	known	0.00	0	59	0	59	n	0.04	2	51	2	51	y	0.00	0	63	0	63	n	0.04	3	72	3	72	y	0.06	5	84	5	84	y	0.00	0	40	0	40	n	0.02	1	48	1	48	n	0.00	0	31	0	31	n	0.02	1	65	1	65	n	0.01	1	80	1	80	n	0.03	2	72	2	72	y	0.06	4	66	4	66	y	ENSMUSG00000024818.16	Slc25a45	chr19	protein_coding	solute carrier family 25, member 45
known_NIR_9974	chr19	5952462	5952659	-	5952519	5952659	A3SS	ENSMUST00000136983.8	known	0.00	0	54	0	54	n	0.00	0	44	0	44	n	0.00	0	72	0	72	n	0.00	0	63	0	63	n	0.00	0	63	0	63	n	0.00	0	38	0	38	n	0.03	2	61	2	61	y	0.00	0	30	0	30	n	0.00	0	35	0	35	n	0.00	0	68	0	68	n	0.00	0	37	0	37	n	0.00	0	56	0	56	n	ENSMUSG00000024826.16	Dpf2	chr19	protein_coding	D4, zinc and double PHD fingers family 2
known_NIR_9975	chr19	5952796;5953800	5953759;5954268	-	5952796	5954268	cassetteExon	ENSMUST00000136983.8	known	0.00	0.0	60	0;0	60	n	0.00	0.0	47	0;0	47	n	0.00	0.0	82	0;0	82	n	0.00	0.0	80	0;0	80	n	0.00	0.0	85	0;0	85	n	0.02	1.0	46	1;1	46	n	0.06	6.0	87	7;5	87	y	0.07	3.0	42	4;2	42	y	0.02	1.0	62	2;0	62	n	0.05	4.0	75	5;3	75	y	0.00	0.0	65	0;0	65	n	0.00	0.0	61	0;0	61	n	ENSMUSG00000024826.16	Dpf2	chr19	protein_coding	D4, zinc and double PHD fingers family 2
known_NIR_9976	chr19	5954340	5954482	-	5954346	5954482	A3SS	ENSMUST00000136983.8	known	0.00	0	50	0	50	n	0.00	0	43	0	43	n	0.03	2	65	2	65	y	0.00	0	55	0	55	n	0.00	0	82	0	82	n	0.00	0	31	0	31	n	0.00	0	58	0	58	n	0.00	0	37	0	37	n	0.00	0	42	0	42	n	0.00	0	69	0	69	n	0.00	0	37	0	37	n	0.00	0	59	0	59	n	ENSMUSG00000024826.16	Dpf2	chr19	protein_coding	D4, zinc and double PHD fingers family 2
known_NIR_9977	chr19	5957189	5963010	-	5957189	5962769	5pMXE	ENSMUST00000136983.8	known	0.00	0	31	0	31	n	0.00	0	20	0	20	n	0.00	0	25	0	25	n	0.06	2	29	2	29	y	0.00	0	31	0	31	n	0.04	1	25	1	25	n	0.03	1	31	1	31	n	0.00	0	29	0	29	n	0.07	2	28	2	28	y	0.03	1	31	1	31	n	0.00	0	19	0	19	n	0.00	0	39	0	39	n	ENSMUSG00000024826.16	Dpf2	chr19	protein_coding	D4, zinc and double PHD fingers family 2
known_NIR_9978	chr19	5962156	5962769	-	5957189	5962769	A3SS	ENSMUST00000136983.8	known	0.06	2	31	2	31	y	0.00	0	20	0	20	n	0.00	0	25	0	25	n	0.00	0	29	0	29	n	0.00	0	31	0	31	n	0.07	2	25	2	25	y	0.00	0	31	0	31	n	0.00	0	29	0	29	n	0.00	0	28	0	28	n	0.09	3	31	3	31	y	0.00	0	19	0	19	n	0.00	0	39	0	39	n	ENSMUSG00000024826.16	Dpf2	chr19	protein_coding	D4, zinc and double PHD fingers family 2
known_NIR_9979	chr19	5991580	5992024	-	5991045	5992024	A3SS	ENSMUST00000025752.15	known	0.21	3	11	3	11	y	0.05	1	19	1	19	n	0.09	1	10	1	10	n	0.08	2	24	2	24	y	0.06	1	15	1	15	n	0.00	0	8	0	8	n	0.17	4	19	4	19	y	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.16	6	31	6	31	y	0.18	4	18	4	18	y	0.22	4	14	4	14	y	ENSMUSG00000024833.16	Pola2	chr19	protein_coding	polymerase (DNA directed), alpha 2
known_NIR_9980	chr19	6001814	6001934	-	6001814	6003093	A5SS	ENSMUST00000025752.15	known	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.18	3	14	3	14	y	0.25	4	12	4	12	y	0.21	4	15	4	15	y	0.00	0	5	0	5	n	0.18	3	14	3	14	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.29	6	15	6	15	y	0.13	2	13	2	13	y	0.31	4	9	4	9	y	ENSMUSG00000024833.16	Pola2	chr19	protein_coding	polymerase (DNA directed), alpha 2
known_NIR_9981	chr19	6011214	6013854	-	6011243	6013854	A3SS	ENSMUST00000025752.15	known	0.50	4	4	4	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.50	4	4	4	4	n	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.25	4	12	4	12	y	0.50	1	1	1	1	n	0.00	0	9	0	9	n	0.27	4	11	4	11	y	0.00	0	12	0	12	n	0.18	2	9	2	9	y	ENSMUSG00000024833.16	Pola2	chr19	protein_coding	polymerase (DNA directed), alpha 2
known_NIR_9982	chr19	60208792	60209486	-	60208792;60209009	60208922;60209486	ES	ENSMUST00000065286.2	known	0.20	3	12.0	3	15;9	y	0.32	3	6.5	3	10;3	y	0.14	5	30.0	5	32;28	y	0.52	8	7.5	8	7;8	y	0.48	18	19.5	18	19;20	y	0.17	2	10.0	2	10;10	y	0.46	9	10.5	9	12;9	y	0.33	4	8.0	4	6;10	y	0.45	5	6.0	5	9;3	y	0.33	7	14.5	7	12;17	y	0.27	5	13.5	5	13;14	y	0.15	3	17.5	3	12;23	y	ENSMUSG00000057858.9	Fam204a	chr19	protein_coding	family with sequence similarity 204, member A
known_NIR_9983	chr19	60209736	60213297	-	60209736	60214664	A5SS	ENSMUST00000065286.2	known	0.25	2	6	2	6	n	0.50	3	3	3	3	n	0.00	0	6	0	6	n	0.25	1	3	1	3	n	0.20	2	8	2	8	y	1.00	3	0	3	0	n	0.33	3	6	3	6	n	1.00	2	0	2	0	n	0.50	4	4	4	4	n	0.50	2	2	2	2	n	0.50	2	2	2	2	n	0.00	0	7	0	7	n	ENSMUSG00000057858.9	Fam204a	chr19	protein_coding	family with sequence similarity 204, member A
known_NIR_9984	chr19	60209736	60215076	-	60209736	60214664	A5SS	ENSMUST00000065286.2	known	0.33	3	6	3	6	n	0.25	1	3	1	3	n	0.70	14	6	14	6	y	0.50	3	3	3	3	n	0.20	2	8	2	8	y	1.00	3	0	3	0	n	0.33	3	6	3	6	n	1.00	1	0	1	0	n	0.33	2	4	2	4	n	0.88	15	2	15	2	y	0.71	5	2	5	2	n	0.56	9	7	9	7	y	ENSMUSG00000057858.9	Fam204a	chr19	protein_coding	family with sequence similarity 204, member A
known_NIR_9985	chr19	60517946;60522712	60522574;60531448	-	60517946	60531448	cassetteExon	ENSMUST00000111460.5	known	1.00	49.0	0	95;3	0	n	1.00	48.0	0	90;6	0	n	1.00	93.5	0	174;13	0	n	1.00	62.0	0	120;4	0	n	0.99	119.0	1	218;20	1	n	1.00	55.0	0	101;9	0	n	1.00	80.5	0	156;5	0	n	1.00	53.5	0	101;6	0	n	1.00	49.5	0	98;1	0	n	1.00	80.5	0	150;11	0	n	0.98	50.5	1	93;8	1	n	0.97	77.0	2	148;6	2	y	ENSMUSG00000033417.17	Cacul1	chr19	protein_coding	CDK2 associated, cullin domain 1
known_NIR_9986	chr19	60522712	60531448	-	60522712	60525852	5pMXE	ENSMUST00000238073.2	known	0.04	3	78	3	78	y	0.08	6	70	6	70	y	0.11	13	105	13	105	y	0.04	4	95	4	95	y	0.12	20	141	20	141	y	0.14	9	54	9	54	y	0.04	5	125	5	125	y	0.09	6	62	6	62	y	0.01	1	82	1	82	n	0.09	11	106	11	106	y	0.09	8	77	8	77	y	0.07	6	80	6	80	y	ENSMUSG00000033417.17	Cacul1	chr19	protein_coding	CDK2 associated, cullin domain 1
known_NIR_9987	chr19	60522712	60531448	-	60522712;60525941	60525852;60531448	ES	ENSMUST00000081790.15	known	0.04	3	82.0	3	78;86	y	0.08	6	66.0	6	70;62	y	0.12	13	97.5	13	105;90	y	0.04	4	92.0	4	95;89	y	0.12	20	144.5	20	141;148	y	0.14	9	54.5	9	54;55	y	0.04	5	115.0	5	125;105	y	0.09	6	62.0	6	62;62	y	0.01	1	71.0	1	82;60	n	0.11	11	92.5	11	106;79	y	0.11	8	64.5	8	77;52	y	0.07	6	84.5	6	80;89	y	ENSMUSG00000033417.17	Cacul1	chr19	protein_coding	CDK2 associated, cullin domain 1
known_NIR_9988	chr19	60525941	60531448	-	60517946	60531448	A3SS	ENSMUST00000111460.5	known	1.00	86	0	86	0	n	1.00	62	0	62	0	n	1.00	90	0	90	0	n	1.00	89	0	89	0	n	0.99	148	1	148	1	n	1.00	55	0	55	0	n	1.00	105	0	105	0	n	1.00	62	0	62	0	n	1.00	60	0	60	0	n	1.00	79	0	79	0	n	0.98	52	1	52	1	n	0.98	89	2	89	2	y	ENSMUSG00000033417.17	Cacul1	chr19	protein_coding	CDK2 associated, cullin domain 1
known_NIR_9989	chr19	6064498	6065766	-	6064498	6065136	5pMXE	ENSMUST00000025891.11	known	0.25	6	18	6	18	y	0.00	0	19	0	19	n	0.00	0	33	0	33	n	0.02	1	41	1	41	n	0.15	7	40	7	40	y	0.00	0	19	0	19	n	0.02	1	49	1	49	n	0.28	7	18	7	18	y	0.22	6	21	6	21	y	0.30	13	30	13	30	y	0.00	0	15	0	15	n	0.26	7	20	7	20	y	ENSMUSG00000024942.20	Capn1	chr19	protein_coding	calpain 1
known_NIR_9990	chr19	60800111	60803050	+	60800111	60803030	A3SS	ENSMUST00000128357.8	known	0.83	30	6	30	6	y	0.83	24	5	24	5	y	0.99	70	1	70	1	n	0.83	34	7	34	7	y	0.75	44	15	44	15	y	0.86	32	5	32	5	y	0.87	40	6	40	6	y	0.83	39	8	39	8	y	0.88	30	4	30	4	y	0.92	35	3	35	3	y	0.93	27	2	27	2	y	1.00	33	0	33	0	n	ENSMUSG00000024993.16	Dennd10	chr19	protein_coding	DENN domain containing 10
known_NIR_9991	chr19	60803246	60809645	+	60803246;60806048	60805969;60809645	ES	ENSMUST00000128357.8	known	0.09	4	43.0	4	49;37	y	0.00	0	21.5	0	23;20	n	0.00	0	54.0	0	65;43	n	0.00	0	32.0	0	29;35	n	0.04	2	43.5	2	51;36	y	0.00	0	34.0	0	31;37	n	0.04	1	27.0	1	31;23	n	0.11	3	25.0	3	30;20	y	0.04	1	22.5	1	25;20	n	0.03	1	36.0	1	35;37	n	0.06	2	29.0	2	32;26	y	0.03	1	34.5	1	36;33	n	ENSMUSG00000024993.16	Dennd10	chr19	protein_coding	DENN domain containing 10
known_NIR_9992	chr19	6097011	6097947	+	6097158	6097947	A5SS	ENSMUST00000138532.8	known	0.25	27	82	27	82	y	0.24	26	81	26	81	y	0.31	71	161	71	161	y	0.24	34	107	34	107	y	0.26	50	142	50	142	y	0.27	51	139	51	139	y	0.28	30	77	30	77	y	0.25	37	111	37	111	y	0.24	17	54	17	54	y	0.21	17	65	17	65	y	0.29	27	67	27	67	y	0.28	24	63	24	63	y	ENSMUSG00000024807.19	Syvn1	chr19	protein_coding	synovial apoptosis inhibitor 1, synoviolin
known_NIR_9993	chr19	6097360	6097947	+	6097011	6097947	A5SS	ENSMUST00000129081.8	known	0.00	0	27	0	27	n	0.07	2	26	2	26	y	0.03	2	71	2	71	y	0.06	2	34	2	34	y	0.04	2	50	2	50	y	0.00	0	51	0	51	n	0.06	2	30	2	30	y	0.05	2	37	2	37	y	0.00	0	17	0	17	n	0.15	3	17	3	17	y	0.04	1	27	1	27	n	0.00	0	24	0	24	n	ENSMUSG00000024807.19	Syvn1	chr19	protein_coding	synovial apoptosis inhibitor 1, synoviolin
known_NIR_9994	chr19	6097360	6097947	+	6097158	6097947	A5SS	ENSMUST00000138532.8	known	0.00	0	82	0	82	n	0.02	2	81	2	81	y	0.01	2	161	2	161	y	0.02	2	107	2	107	y	0.01	2	142	2	142	y	0.00	0	139	0	139	n	0.03	2	77	2	77	y	0.02	2	111	2	111	y	0.00	0	54	0	54	n	0.04	3	65	3	65	y	0.01	1	67	1	67	n	0.00	0	63	0	63	n	ENSMUSG00000024807.19	Syvn1	chr19	protein_coding	synovial apoptosis inhibitor 1, synoviolin
known_NIR_9995	chr19	6102509	6102590	+	6102509	6102578	A3SS	ENSMUST00000138532.8	known	0.00	0	136	0	136	n	0.00	0	169	0	169	n	0.00	0	348	0	348	n	0.02	3	127	3	127	y	0.00	0	203	0	203	n	0.00	0	195	0	195	n	0.00	0	144	0	144	n	0.01	2	173	2	173	y	0.02	3	120	3	120	y	0.00	0	116	0	116	n	0.00	0	144	0	144	n	0.00	0	132	0	132	n	ENSMUSG00000024807.19	Syvn1	chr19	protein_coding	synovial apoptosis inhibitor 1, synoviolin
known_NIR_9996	chr19	6105230	6107689	-	6105230	6106959	5pMXE	ENSMUST00000236412.2	known	0.02	3	126	3	126	y	0.00	0	99	0	99	n	0.01	1	71	1	71	n	0.00	0	146	0	146	n	0.03	4	146	4	146	y	0.00	0	50	0	50	n	0.02	3	137	3	137	y	0.00	0	73	0	73	n	0.00	0	103	0	103	n	0.00	0	185	0	185	n	0.01	1	124	1	124	n	0.00	0	138	0	138	n	ENSMUSG00000007338.11	Mrpl49	chr19	protein_coding	mitochondrial ribosomal protein L49
known_NIR_9997	chr19	6105230	6107689	-	6105230;6107109	6106959;6107689	ES	ENSMUST00000007482.8	known	0.03	3	111.0	3	126;96	y	0.00	0	84.0	0	99;69	n	0.02	1	64.5	1	71;58	n	0.00	0	125.0	0	146;104	n	0.03	4	128.5	4	146;111	y	0.00	0	37.5	0	50;25	n	0.03	3	116.5	3	137;96	y	0.00	0	51.5	0	73;30	n	0.00	0	92.5	0	103;82	n	0.00	0	155.0	0	185;125	n	0.01	1	105.5	1	124;87	n	0.00	0	128.5	0	138;119	n	ENSMUSG00000007338.11	Mrpl49	chr19	protein_coding	mitochondrial ribosomal protein L49
known_NIR_9998	chr19	6108031	6108258	+	6108031	6108273	A3SS	ENSMUST00000178310.9	known	0.00	3	904	3	904	y	0.01	6	937	6	937	y	0.01	8	1121	8	1121	y	0.00	4	799	4	799	y	0.00	5	1075	5	1075	y	0.01	5	653	5	653	y	0.00	4	1198	4	1198	y	0.00	0	619	0	619	n	0.00	3	765	3	765	y	0.00	3	1198	3	1198	y	0.00	1	1103	1	1103	n	0.01	7	993	7	993	y	ENSMUSG00000038274.14	Fau	chr19	protein_coding	Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived)
known_NIR_9999	chr19	6108031	6108258	+	6108031	6108276	A3SS	ENSMUST00000043074.14	known	0.04	3	76	3	76	y	0.05	6	104	6	104	y	0.08	8	96	8	96	y	0.04	4	88	4	88	y	0.04	5	111	5	111	y	0.06	5	75	5	75	y	0.03	4	119	4	119	y	0.00	0	54	0	54	n	0.03	3	83	3	83	y	0.02	3	121	3	121	y	0.01	1	111	1	111	n	0.06	7	102	7	102	y	ENSMUSG00000038274.14	Fau	chr19	protein_coding	Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived)
known_NIR_10000	chr19	6108031	6108258	+	6108031	6108305	A3SS	ENSMUST00000237859.2	known	0.27	3	8	3	8	y	1.00	6	0	6	0	n	1.00	8	0	8	0	n	1.00	4	0	4	0	n	1.00	5	0	5	0	n	1.00	5	0	5	0	n	1.00	4	0	4	0	n	-	-	-	-	-	-	0.60	3	2	3	2	n	0.50	3	3	3	3	n	1.00	1	0	1	0	n	0.88	7	1	7	1	n	ENSMUSG00000038274.14	Fau	chr19	protein_coding	Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived)
known_NIR_10001	chr19	6108031	6108276	+	6108031	6108273	A3SS	ENSMUST00000178310.9	known	0.08	76	904	76	904	y	0.10	104	937	104	937	y	0.08	96	1121	96	1121	y	0.10	88	799	88	799	y	0.09	111	1075	111	1075	y	0.10	75	653	75	653	y	0.09	119	1198	119	1198	y	0.08	54	619	54	619	y	0.10	83	765	83	765	y	0.09	121	1198	121	1198	y	0.09	111	1103	111	1103	y	0.09	102	993	102	993	y	ENSMUSG00000038274.14	Fau	chr19	protein_coding	Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived)
known_NIR_10002	chr19	6108031	6108276	+	6108031	6108305	A3SS	ENSMUST00000237859.2	known	0.90	76	8	76	8	y	1.00	104	0	104	0	n	1.00	96	0	96	0	n	1.00	88	0	88	0	n	1.00	111	0	111	0	n	1.00	75	0	75	0	n	1.00	119	0	119	0	n	1.00	54	0	54	0	n	0.98	83	2	83	2	y	0.98	121	3	121	3	y	1.00	111	0	111	0	n	0.99	102	1	102	1	n	ENSMUSG00000038274.14	Fau	chr19	protein_coding	Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived)
known_NIR_10003	chr19	6108031	6108305	+	6108031	6108273	A3SS	ENSMUST00000178310.9	known	0.01	8	904	8	904	y	0.00	0	937	0	937	n	0.00	0	1121	0	1121	n	0.00	0	799	0	799	n	0.00	0	1075	0	1075	n	0.00	0	653	0	653	n	0.00	0	1198	0	1198	n	0.00	0	619	0	619	n	0.00	2	765	2	765	y	0.00	3	1198	3	1198	y	0.00	0	1103	0	1103	n	0.00	1	993	1	993	n	ENSMUSG00000038274.14	Fau	chr19	protein_coding	Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived)
known_NIR_10004	chr19	61105726	61115445	-	61105726;61106788	61106665;61115445	ES	ENSMUST00000127290.8	known	0.00	0	5.5	0	11;0	n	0.00	0	3.0	0	6;0	n	0.32	3	6.5	3	13;0	n	0.00	0	5.0	0	10;0	n	0.00	0	6.0	0	12;0	n	0.00	0	3.5	0	7;0	n	0.00	0	8.0	0	16;0	n	0.00	0	7.0	0	14;0	n	0.00	0	8.0	0	15;1	n	0.44	4	5.0	4	8;2	y	0.00	0	7.0	0	14;0	n	0.00	0	12.0	0	20;4	n	ENSMUSG00000074733.15	Zfp950	chr19	protein_coding	zinc finger protein 950
known_NIR_10005	chr19	61108890	61115445	-	61106788	61115445	A3SS	ENSMUST00000127290.8	known	1.00	9	0	9	0	n	1.00	6	0	6	0	n	1.00	2	0	2	0	n	1.00	3	0	3	0	n	1.00	9	0	9	0	n	1.00	3	0	3	0	n	1.00	4	0	4	0	n	1.00	4	0	4	0	n	0.86	6	1	6	1	n	0.71	5	2	5	2	n	1.00	11	0	11	0	n	0.71	10	4	10	4	y	ENSMUSG00000074733.15	Zfp950	chr19	protein_coding	zinc finger protein 950
known_NIR_10006	chr19	6113131	6113354	-	6113103	6113354	A3SS	ENSMUST00000159084.8	known	0.12	62	473	62	473	y	0.11	51	422	51	422	y	0.09	30	290	30	290	y	0.09	45	483	45	483	y	0.12	52	373	52	373	y	0.11	25	209	25	209	y	0.08	56	622	56	622	y	0.12	33	239	33	239	y	0.09	44	466	44	466	y	0.11	85	699	85	699	y	0.13	95	634	95	634	y	0.12	80	574	80	574	y	ENSMUSG00000024799.17	Tm7sf2	chr19	protein_coding	transmembrane 7 superfamily member 2
known_NIR_10007	chr19	6113476;6113637	6113557;6113852	-	6113476	6113852	cassetteExon	ENSMUST00000159084.8	known	1.00	444.0	0	449;439	0	n	1.00	403.5	1	427;380	1	n	0.99	285.5	3	279;292	3	y	0.99	508.5	4	469;548	4	y	1.00	428.0	1	436;420	1	n	1.00	207.0	1	197;217	1	n	0.99	542.5	3	545;540	3	y	0.97	220.5	6	223;218	6	y	1.00	447.5	1	447;448	1	n	1.00	665.5	3	648;683	3	y	1.00	616.5	0	605;628	0	n	0.99	569.0	6	554;584	6	y	ENSMUSG00000024799.17	Tm7sf2	chr19	protein_coding	transmembrane 7 superfamily member 2
known_NIR_10008	chr19	6114228	6116998	-	6116723	6116998	3pMXE	ENSMUST00000159836.2	known	0.00	0	196	0	196	n	0.01	1	170	1	170	n	0.00	0	146	0	146	n	0.00	1	288	1	288	n	0.00	0	208	0	208	n	0.00	0	91	0	91	n	0.00	1	201	1	201	n	0.00	0	110	0	110	n	0.00	0	261	0	261	n	0.00	0	362	0	362	n	0.00	1	280	1	280	n	0.01	3	283	3	283	y	ENSMUSG00000024799.17	Tm7sf2	chr19	protein_coding	transmembrane 7 superfamily member 2
known_NIR_10009	chr19	6114228;6116593	6116341;6116998	-	6114228	6116998	cassetteExon	ENSMUST00000161718.8	known	1.00	185.0	0	364;6	0	n	0.99	141.0	1	277;5	1	n	1.00	122.5	0	241;4	0	n	0.99	193.0	1	383;3	1	n	1.00	164.5	0	319;10	0	n	1.00	64.5	0	126;3	0	n	1.00	206.5	1	405;8	1	n	1.00	99.0	0	197;1	0	n	1.00	188.0	0	367;9	0	n	1.00	287.5	0	562;13	0	n	1.00	237.0	1	464;10	1	n	0.99	241.5	3	470;13	3	y	ENSMUSG00000024799.17	Tm7sf2	chr19	protein_coding	transmembrane 7 superfamily member 2
known_NIR_10010	chr19	6114228;6116723	6116341;6116998	-	6114228	6116998	cassetteExon	ENSMUST00000161718.8	known	1.00	280.0	0	364;196	0	n	1.00	223.5	1	277;170	1	n	1.00	193.5	0	241;146	0	n	1.00	335.5	1	383;288	1	n	1.00	263.5	0	319;208	0	n	1.00	108.5	0	126;91	0	n	1.00	303.0	1	405;201	1	n	1.00	153.5	0	197;110	0	n	1.00	314.0	0	367;261	0	n	1.00	462.0	0	562;362	0	n	1.00	372.0	1	464;280	1	n	0.99	376.5	3	470;283	3	y	ENSMUSG00000024799.17	Tm7sf2	chr19	protein_coding	transmembrane 7 superfamily member 2
known_NIR_10011	chr19	6114228;6117052	6116998;6117699	-	6114228;6117349	6116341;6117699	MXE	ENSMUST00000161090.8	known	0.03	9.0	317.0	0;18	364;270	n	0.03	8.0	236.0	1;15	277;195	n	0.00	0.5	213.0	0;1	241;185	n	0.03	13.0	363.5	1;25	383;344	n	0.03	10.0	299.0	0;20	319;279	n	0.01	1.5	134.5	0;3	126;143	n	0.02	7.0	353.0	1;13	405;301	n	0.02	4.0	174.0	0;8	197;151	n	0.04	14.0	331.5	0;28	367;296	n	0.04	22.5	493.5	0;45	562;425	n	0.04	17.5	389.5	1;34	464;315	n	0.04	14.5	380.5	3;26	470;291	y	ENSMUSG00000024799.17	Tm7sf2	chr19	protein_coding	transmembrane 7 superfamily member 2
known_NIR_10012	chr19	6116593	6116998	-	6116723	6116998	A3SS	ENSMUST00000159084.8	known	0.03	6	196	6	196	y	0.03	5	170	5	170	y	0.03	4	146	4	146	y	0.01	3	288	3	288	y	0.05	10	208	10	208	y	0.03	3	91	3	91	y	0.04	8	201	8	201	y	0.01	1	110	1	110	n	0.03	9	261	9	261	y	0.03	13	362	13	362	y	0.03	10	280	10	280	y	0.04	13	283	13	283	y	ENSMUSG00000024799.17	Tm7sf2	chr19	protein_coding	transmembrane 7 superfamily member 2
known_NIR_10013	chr19	6117052	6117699	-	6117052	6117153	A5SS&ES	ENSMUST00000162549.2	known	0.07	18	248	18	248	y	0.07	15	188	15	188	y	0.01	1	166	1	166	n	0.07	25	324	25	324	y	0.07	20	273	20	273	y	0.02	3	119	3	119	y	0.04	13	280	13	280	y	0.06	8	134	8	134	y	0.09	28	282	28	282	y	0.11	45	378	45	378	y	0.09	34	338	34	338	y	0.07	26	367	26	367	y	ENSMUSG00000024799.17	Tm7sf2	chr19	protein_coding	transmembrane 7 superfamily member 2
known_NIR_10014	chr19	6117052	6117699	-	6117052;6117349	6117153;6117699	ES	ENSMUST00000159084.8	known	0.06	18	259.0	18	248;270	y	0.07	15	191.5	15	188;195	y	0.01	1	175.5	1	166;185	n	0.07	25	334.0	25	324;344	y	0.07	20	276.0	20	273;279	y	0.02	3	131.0	3	119;143	y	0.04	13	290.5	13	280;301	y	0.05	8	142.5	8	134;151	y	0.09	28	289.0	28	282;296	y	0.10	45	401.5	45	378;425	y	0.09	34	326.5	34	338;315	y	0.07	26	329.0	26	367;291	y	ENSMUSG00000024799.17	Tm7sf2	chr19	protein_coding	transmembrane 7 superfamily member 2
known_NIR_10015	chr19	6117349	6117808	-	6117349	6117699	A5SS	ENSMUST00000159084.8	known	0.00	1	270	1	270	n	0.00	0	195	0	195	n	0.01	2	185	2	185	y	0.01	3	344	3	344	y	0.01	2	279	2	279	y	0.00	0	143	0	143	n	0.01	3	301	3	301	y	0.01	1	151	1	151	n	0.00	0	296	0	296	n	0.02	9	425	9	425	y	0.00	0	315	0	315	n	0.01	3	291	3	291	y	ENSMUSG00000024799.17	Tm7sf2	chr19	protein_coding	transmembrane 7 superfamily member 2
known_NIR_10016	chr19	6118471	6118885	-	6118405	6118885	A3SS	ENSMUST00000025711.13	known	0.09	6	61	6	61	y	0.07	5	65	5	65	y	0.19	10	44	10	44	y	0.09	4	43	4	43	y	0.04	2	48	2	48	y	0.14	4	25	4	25	y	0.06	5	79	5	79	y	0.10	4	36	4	36	y	0.00	0	42	0	42	n	0.03	2	64	2	64	y	0.06	4	60	4	60	y	0.07	4	56	4	56	y	ENSMUSG00000024797.15	Vps51	chr19	protein_coding	VPS51 GARP complex subunit
known_NIR_10017	chr19	61215622	61216777	-	61215622	61215710	5pMXE	ENSMUST00000237386.2	known	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.06	1	16	1	16	n	0.17	1	5	1	5	n	0.27	4	11	4	11	y	0.20	1	4	1	4	n	0.25	2	6	2	6	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.38	3	5	3	5	n	ENSMUSG00000059326.8	Csf2ra	chr19	protein_coding	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)
known_NIR_10018	chr19	61215622	61216777	-	61215622;61215803	61215710;61216777	ES	ENSMUST00000076046.7	known	0.00	0	4.5	0	4;5	n	0.18	1	4.5	1	3;6	n	0.00	0	13.5	0	13;14	n	0.00	0	5.5	0	7;4	n	0.07	1	13.0	1	16;10	n	0.20	1	4.0	1	5;3	n	0.26	4	11.5	4	11;12	y	0.15	1	5.5	1	4;7	n	0.29	2	5.0	2	6;4	y	0.00	0	4.5	0	7;2	n	0.00	0	3.5	0	3;4	n	0.29	3	7.5	3	5;10	y	ENSMUSG00000059326.8	Csf2ra	chr19	protein_coding	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)
known_NIR_10019	chr19	6131244	6131877	-	6127508	6131877	A3SS	ENSMUST00000162374.4	known	1.00	54	0	54	0	n	1.00	41	0	41	0	n	1.00	45	0	45	0	n	1.00	36	0	36	0	n	1.00	45	0	45	0	n	1.00	21	0	21	0	n	1.00	49	0	49	0	n	1.00	24	0	24	0	n	0.96	26	1	26	1	n	1.00	39	0	39	0	n	1.00	48	0	48	0	n	0.95	35	2	35	2	y	ENSMUSG00000100621.3	Gm28374	chr19	protein_coding	predicted gene 28374
known_NIR_10020	chr19	6134491	6134676	-	6134491	6134825	A5SS	ENSMUST00000237738.2	known	0.27	6	16	6	16	y	0.19	4	17	4	17	y	0.00	0	21	0	21	n	0.05	1	21	1	21	n	0.08	3	36	3	36	y	0.00	0	16	0	16	n	0.13	3	20	3	20	y	0.44	8	10	8	10	y	0.00	0	23	0	23	n	0.10	3	26	3	26	y	0.00	0	28	0	28	n	0.08	2	23	2	23	y	ENSMUSG00000024792.10	Zfpl1	chr19	protein_coding	zinc finger like protein 1
known_NIR_10021	chr19	6134491	6134676	-	6134491	6134894	A5SS	ENSMUST00000025707.9	known	0.30	6	14	6	14	y	0.27	4	11	4	11	y	0.00	0	13	0	13	n	0.07	1	13	1	13	n	0.12	3	23	3	23	y	0.00	0	7	0	7	n	0.12	3	21	3	21	y	0.33	8	16	8	16	y	0.00	0	11	0	11	n	0.16	3	16	3	16	y	0.00	0	18	0	18	n	0.10	2	18	2	18	y	ENSMUSG00000024792.10	Zfpl1	chr19	protein_coding	zinc finger like protein 1
known_NIR_10022	chr19	6134491	6134803	-	6134491	6134676	5pMXE	ENSMUST00000161548.8	known	0.00	0	6	0	6	n	0.00	0	4	0	4	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.50	3	3	3	3	n	0.20	2	8	2	8	y	-	-	-	-	-	-	0.25	1	3	1	3	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	ENSMUSG00000024792.10	Zfpl1	chr19	protein_coding	zinc finger like protein 1
known_NIR_10023	chr19	6134491	6134803	-	6134491	6134825	A5SS	ENSMUST00000237738.2	known	0.00	0	16	0	16	n	0.00	0	17	0	17	n	0.05	1	21	1	21	n	0.00	0	21	0	21	n	0.03	1	36	1	36	n	0.00	0	16	0	16	n	0.13	3	20	3	20	y	0.17	2	10	2	10	y	0.00	0	23	0	23	n	0.04	1	26	1	26	n	0.03	1	28	1	28	n	0.04	1	23	1	23	n	ENSMUSG00000024792.10	Zfpl1	chr19	protein_coding	zinc finger like protein 1
known_NIR_10024	chr19	6134491	6134803	-	6134491	6134894	A5SS	ENSMUST00000025707.9	known	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.07	1	13	1	13	n	0.00	0	13	0	13	n	0.04	1	23	1	23	n	0.00	0	7	0	7	n	0.12	3	21	3	21	y	0.11	2	16	2	16	y	0.00	0	11	0	11	n	0.06	1	16	1	16	n	0.05	1	18	1	18	n	0.05	1	18	1	18	n	ENSMUSG00000024792.10	Zfpl1	chr19	protein_coding	zinc finger like protein 1
known_NIR_10025	chr19	6134491	6134825	-	6134491	6134894	A5SS	ENSMUST00000025707.9	known	0.53	16	14	16	14	y	0.61	17	11	17	11	y	0.62	21	13	21	13	y	0.62	21	13	21	13	y	0.61	36	23	36	23	y	0.70	16	7	16	7	y	0.49	20	21	20	21	y	0.38	10	16	10	16	y	0.68	23	11	23	11	y	0.62	26	16	26	16	y	0.61	28	18	28	18	y	0.56	23	18	23	18	y	ENSMUSG00000024792.10	Zfpl1	chr19	protein_coding	zinc finger like protein 1
known_NIR_10026	chr19	6173980	6178079	-	6173980;6174218	6174183;6178079	ES	ENSMUST00000025702.14	known	0.00	0	33.5	0	30;37	n	0.00	0	33.0	0	28;38	n	0.00	0	41.0	0	37;45	n	0.00	0	29.5	0	27;32	n	0.00	0	37.0	0	36;38	n	0.00	0	17.5	0	17;18	n	0.04	1	27.5	1	27;28	n	0.06	2	31.5	2	30;33	y	0.00	0	26.5	0	24;29	n	0.00	0	33.0	0	30;36	n	0.00	0	33.5	0	29;38	n	0.02	1	42.5	1	40;45	n	ENSMUSG00000024787.15	Snx15	chr19	protein_coding	sorting nexin 15
known_NIR_10027	chr19	6173980	6178079	-	6174218	6178079	A3SS	ENSMUST00000129076.2	known	0.00	0	37	0	37	n	0.00	0	38	0	38	n	0.00	0	45	0	45	n	0.00	0	32	0	32	n	0.00	0	38	0	38	n	0.00	0	18	0	18	n	0.03	1	28	1	28	n	0.06	2	33	2	33	y	0.00	0	29	0	29	n	0.00	0	36	0	36	n	0.00	0	38	0	38	n	0.02	1	45	1	45	n	ENSMUSG00000024787.15	Snx15	chr19	protein_coding	sorting nexin 15
known_NIR_10028	chr19	6305301	6305439	+	6305295	6305439	A5SS	ENSMUST00000045351.13	known	0.20	5	20	5	20	y	0.18	4	18	4	18	y	0.11	4	33	4	33	y	0.28	8	21	8	21	y	0.27	12	32	12	32	y	0.13	2	13	2	13	y	0.07	2	26	2	26	y	0.09	2	20	2	20	y	0.29	7	17	7	17	y	0.24	10	32	10	32	y	0.17	3	15	3	15	y	0.16	7	37	7	37	y	ENSMUSG00000024773.16	Atg2a	chr19	protein_coding	autophagy related 2A
known_NIR_10029	chr19	6385112	6385475	+	6385100	6385475	A5SS	ENSMUST00000113502.10	known	0.50	2	2	2	2	n	0.46	6	7	6	7	y	0.71	5	2	5	2	n	0.56	5	4	5	4	n	0.42	5	7	5	7	y	1.00	1	0	1	0	n	0.64	9	5	9	5	y	0.57	4	3	4	3	n	0.40	2	3	2	3	n	0.50	5	5	5	5	y	0.50	2	2	2	2	n	0.38	5	8	5	8	y	ENSMUSG00000024947.18	Men1	chr19	protein_coding	multiple endocrine neoplasia 1
known_NIR_10030	chr19	6388991	6389717	+	6388991;6389533	6389369;6389717	ES	ENSMUST00000113502.10	known	0.00	0	43.0	0	35;51	n	0.00	0	34.0	0	36;32	n	0.00	0	47.5	0	37;58	n	0.00	0	52.5	0	64;41	n	0.00	0	65.0	0	84;46	n	0.03	1	29.5	1	29;30	n	0.00	0	46.0	0	51;41	n	0.00	0	33.0	0	38;28	n	0.00	0	41.5	0	41;42	n	0.01	1	70.0	1	70;70	n	0.06	3	47.0	3	42;52	y	0.00	0	52.0	0	58;46	n	ENSMUSG00000024947.18	Men1	chr19	protein_coding	multiple endocrine neoplasia 1
known_NIR_10031	chr19	6388991	6389717	+	6389533	6389717	A5SS	ENSMUST00000238038.2	known	0.00	0	51	0	51	n	0.00	0	32	0	32	n	0.00	0	58	0	58	n	0.00	0	41	0	41	n	0.00	0	46	0	46	n	0.03	1	30	1	30	n	0.00	0	41	0	41	n	0.00	0	28	0	28	n	0.00	0	42	0	42	n	0.01	1	70	1	70	n	0.05	3	52	3	52	y	0.00	0	46	0	46	n	ENSMUSG00000024947.18	Men1	chr19	protein_coding	multiple endocrine neoplasia 1
known_NIR_10032	chr19	6391546	6391774	+	6391546	6391797	A3SS	ENSMUST00000133696.8	known	1.00	9	0	9	0	n	0.92	11	1	11	1	n	1.00	5	0	5	0	n	1.00	12	0	12	0	n	0.86	18	3	18	3	y	0.83	5	1	5	1	n	0.81	13	3	13	3	y	1.00	13	0	13	0	n	1.00	8	0	8	0	n	0.96	22	1	22	1	n	1.00	15	0	15	0	n	1.00	14	0	14	0	n	ENSMUSG00000024948.16	Map4k2	chr19	protein_coding	mitogen-activated protein kinase kinase kinase kinase 2
known_NIR_10033	chr19	6391546	6391800	+	6391546	6391774	A3SS	ENSMUST00000025897.13	known	0.00	0	9	0	9	n	0.27	4	11	4	11	y	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	18	0	18	n	0.17	1	5	1	5	n	0.00	0	13	0	13	n	0.00	0	13	0	13	n	0.20	2	8	2	8	y	0.08	2	22	2	22	y	0.12	2	15	2	15	y	0.12	2	14	2	14	y	ENSMUSG00000024948.16	Map4k2	chr19	protein_coding	mitogen-activated protein kinase kinase kinase kinase 2
known_NIR_10034	chr19	6396847	6401210	+	6396839	6401210	A5SS	ENSMUST00000133696.8	known	0.16	6	31	6	31	y	0.07	2	25	2	25	y	0.00	0	12	0	12	n	0.11	2	17	2	17	y	0.00	0	28	0	28	n	0.00	0	15	0	15	n	0.07	2	26	2	26	y	0.21	4	15	4	15	y	0.11	2	17	2	17	y	0.00	0	34	0	34	n	0.10	2	18	2	18	y	0.00	0	26	0	26	n	ENSMUSG00000024948.16	Map4k2	chr19	protein_coding	mitogen-activated protein kinase kinase kinase kinase 2
known_NIR_10035	chr19	6403220	6403291	+	6403220	6403308	A3SS	ENSMUST00000133696.8	known	0.00	0	30	0	30	n	0.00	0	30	0	30	n	0.12	2	14	2	14	y	0.17	5	24	5	24	y	0.00	0	35	0	35	n	0.00	0	13	0	13	n	0.00	0	42	0	42	n	0.00	0	10	0	10	n	0.10	2	18	2	18	y	0.05	2	37	2	37	y	0.03	1	36	1	36	n	0.05	2	39	2	39	y	ENSMUSG00000024948.16	Map4k2	chr19	protein_coding	mitogen-activated protein kinase kinase kinase kinase 2
known_NIR_10036	chr19	6414400	6415694	+	6414148	6415694	A5SS	ENSMUST00000131252.8	known	0.03	2	62	2	62	y	0.00	0	46	0	46	n	0.02	2	112	2	112	y	0.01	1	101	1	101	n	0.02	2	108	2	108	y	0.00	0	51	0	51	n	0.02	2	103	2	103	y	0.01	1	71	1	71	n	0.03	2	56	2	56	y	0.01	1	92	1	92	n	0.00	0	63	0	63	n	0.00	0	105	0	105	n	ENSMUSG00000024949.18	Sf1	chr19	protein_coding	splicing factor 1
known_NIR_10037	chr19	6414736	6415694	+	6414148	6415694	A5SS	ENSMUST00000131252.8	known	0.00	0	62	0	62	n	0.00	0	46	0	46	n	0.01	1	112	1	112	n	0.03	3	101	3	101	y	0.01	1	108	1	108	n	0.04	2	51	2	51	y	0.00	0	103	0	103	n	0.00	0	71	0	71	n	0.00	0	56	0	56	n	0.01	1	92	1	92	n	0.02	1	63	1	63	n	0.05	5	105	5	105	y	ENSMUSG00000024949.18	Sf1	chr19	protein_coding	splicing factor 1
known_NIR_10038	chr19	6415822	6421297	+	6415822;6418469	6418394;6421297	ES	ENSMUST00000131252.8	known	0.08	7	84.0	7	80;88	y	0.14	10	63.0	10	58;68	y	0.07	12	168.0	12	161;175	y	0.11	13	103.0	13	104;102	y	0.06	7	112.5	7	110;115	y	0.12	7	52.0	7	52;52	y	0.08	10	122.0	10	127;117	y	0.20	15	61.5	15	57;66	y	0.05	5	93.0	5	93;93	y	0.06	9	145.5	9	132;159	y	0.13	12	83.0	12	77;89	y	0.08	13	141.5	13	144;139	y	ENSMUSG00000024949.18	Sf1	chr19	protein_coding	splicing factor 1
known_NIR_10039	chr19	6424313	6424584	+	6424313	6424579	A3SS	ENSMUST00000131252.8	known	0.13	13	85	13	85	y	0.08	8	87	8	87	y	0.07	10	131	10	131	y	0.06	6	89	6	89	y	0.05	5	87	5	87	y	0.14	9	54	9	54	y	0.12	17	124	17	124	y	0.05	4	69	4	69	y	0.13	12	82	12	82	y	0.04	6	129	6	129	y	0.07	7	90	7	90	y	0.07	9	120	9	120	y	ENSMUSG00000024949.18	Sf1	chr19	protein_coding	splicing factor 1
known_NIR_10040	chr19	6424317	6424579	+	6424313	6424579	A5SS	ENSMUST00000131252.8	known	0.11	11	85	11	85	y	0.04	4	87	4	87	y	0.16	25	131	25	131	y	0.00	0	89	0	89	n	0.11	11	87	11	87	y	0.19	13	54	13	54	y	0.09	12	124	12	124	y	0.15	12	69	12	69	y	0.09	8	82	8	82	y	0.05	7	129	7	129	y	0.12	12	90	12	90	y	0.10	13	120	13	120	y	ENSMUSG00000024949.18	Sf1	chr19	protein_coding	splicing factor 1
known_NIR_10041	chr19	6424638	6424850	+	6424638	6424749	A3SS	ENSMUST00000131252.8	known	0.04	4	108	4	108	y	0.00	0	65	0	65	n	0.02	2	115	2	115	y	0.00	0	67	0	67	n	0.00	0	82	0	82	n	0.03	2	56	2	56	y	0.00	0	110	0	110	n	0.04	2	53	2	53	y	0.01	1	73	1	73	n	0.00	0	110	0	110	n	0.02	2	80	2	80	y	0.00	0	108	0	108	n	ENSMUSG00000024949.18	Sf1	chr19	protein_coding	splicing factor 1
known_NIR_10042	chr19	6424928	6426326	+	6424928	6425688	A3SS	ENSMUST00000131252.8	known	0.57	81	62	81	62	y	0.57	96	73	96	73	y	0.56	135	107	135	107	y	0.58	89	64	89	64	y	0.58	107	76	107	76	y	0.38	37	61	37	61	y	0.59	100	69	100	69	y	0.57	56	42	56	42	y	0.57	85	63	85	63	y	0.58	100	73	100	73	y	0.57	83	62	83	62	y	0.56	105	82	105	82	y	ENSMUSG00000024949.18	Sf1	chr19	protein_coding	splicing factor 1
known_NIR_10043	chr19	6451893	6452243	+	6451893	6452502	A3SS	ENSMUST00000113476.8	known	0.08	3	34	3	34	y	0.15	5	29	5	29	y	0.04	1	26	1	26	n	0.03	2	56	2	56	y	0.05	3	53	3	53	y	0.00	0	29	0	29	n	0.07	4	51	4	51	y	0.12	4	28	4	28	y	0.10	5	46	5	46	y	0.03	2	63	2	63	y	0.09	5	48	5	48	y	0.02	1	57	1	57	n	ENSMUSG00000032946.17	Rasgrp2	chr19	protein_coding	RAS, guanyl releasing protein 2
known_NIR_10044	chr19	6451893	6453061	+	6451893	6452502	A3SS&ES	ENSMUST00000113476.8	known	0.00	0	34	0	34	n	0.00	0	29	0	29	n	0.07	2	26	2	26	y	0.03	2	56	2	56	y	0.00	0	53	0	53	n	0.00	0	29	0	29	n	0.00	0	51	0	51	n	0.03	1	28	1	28	n	0.00	0	46	0	46	n	0.02	1	63	1	63	n	0.04	2	48	2	48	y	0.00	0	57	0	57	n	ENSMUSG00000032946.17	Rasgrp2	chr19	protein_coding	RAS, guanyl releasing protein 2
known_NIR_10045	chr19	6817046	6817748	-	6817046	6817702	A5SS	ENSMUST00000239527.1	known	0.11	1	8	1	8	n	0.06	1	15	1	15	n	0.00	0	20	0	20	n	0.00	0	10	0	10	n	0.21	3	11	3	11	y	0.00	0	5	0	5	n	0.07	1	13	1	13	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.09	2	20	2	20	y	0.00	0	6	0	6	n	0.00	0	8	0	8	n	ENSMUSG00000118668.1	Rps6ka4	chr19	protein_coding	--
known_NIR_10046	chr19	6884488	6884610	-	6884495	6884610	A3SS	ENSMUST00000145300.2	known	0.00	1	1198	1	1198	n	0.00	3	1198	3	1198	y	0.00	0	1296	0	1296	n	0.00	0	1144	0	1144	n	0.00	0	1428	0	1428	n	0.00	0	760	0	760	n	0.00	2	1609	2	1609	y	0.00	0	695	0	695	n	0.00	2	1173	2	1173	y	0.00	0	1639	0	1639	n	0.00	0	1426	0	1426	n	0.00	0	1370	0	1370	n	ENSMUSG00000024953.18	Prdx5	chr19	protein_coding	peroxiredoxin 5
known_NIR_10047	chr19	6884648	6885350	-	6884648;6885041	6884910;6885350	ES	ENSMUST00000238095.2	known	0.00	0	1266.5	0	1192;1341	n	0.00	3	1243.0	3	1202;1284	y	0.00	0	1371.5	0	1303;1440	n	0.00	0	1267.5	0	1147;1388	n	0.00	0	1591.5	0	1518;1665	n	0.00	1	858.0	1	846;870	n	0.00	0	1701.5	0	1603;1800	n	0.00	0	775.5	0	713;838	n	0.00	2	1251.0	2	1185;1317	y	0.00	2	1751.5	2	1662;1841	y	0.00	0	1573.0	0	1524;1622	n	0.00	2	1528.5	2	1419;1638	y	ENSMUSG00000024953.18	Prdx5	chr19	protein_coding	peroxiredoxin 5
known_NIR_10048	chr19	6891660	6898990	-	6897767	6898990	A3SS&ES	ENSMUST00000239322.2	known	0.00	0	29	0	29	n	0.00	0	29	0	29	n	0.00	0	24	0	24	n	0.02	1	40	1	40	n	0.00	0	48	0	48	n	0.00	0	16	0	16	n	0.00	0	18	0	18	n	0.00	0	14	0	14	n	0.04	1	25	1	25	n	0.05	2	42	2	42	y	0.00	0	44	0	44	n	0.00	0	42	0	42	n	ENSMUSG00000024955.16	Esrra	chr19	protein_coding	estrogen related receptor, alpha
known_NIR_10049	chr19	6897767	6898990	-	6897767	6898383	5pMXE	ENSMUST00000172975.3	known	1.00	29	0	29	0	n	1.00	29	0	29	0	n	1.00	24	0	24	0	n	1.00	40	0	40	0	n	0.96	48	2	48	2	y	1.00	16	0	16	0	n	1.00	18	0	18	0	n	1.00	14	0	14	0	n	1.00	25	0	25	0	n	1.00	42	0	42	0	n	0.90	44	5	44	5	y	1.00	42	0	42	0	n	ENSMUSG00000024955.16	Esrra	chr19	protein_coding	estrogen related receptor, alpha
known_NIR_10050	chr19	6916504	6916629	-	6916508	6916629	A3SS	ENSMUST00000166115.9	known	0.11	9	72	9	72	y	0.08	8	89	8	89	y	0.09	8	80	8	80	y	0.11	7	59	7	59	y	0.06	6	100	6	100	y	0.05	4	70	4	70	y	0.09	10	100	10	100	y	0.16	11	58	11	58	y	0.07	6	74	6	74	y	0.07	6	76	6	76	y	0.12	11	83	11	83	y	0.11	8	68	8	68	y	ENSMUSG00000024958.14	Gpr137	chr19	protein_coding	G protein-coupled receptor 137
known_NIR_10051	chr19	6916778	6917720	-	6916778;6917122	6916897;6917720	ES	ENSMUST00000166115.9	known	0.47	27	31.0	27	35;27	y	0.59	37	25.5	37	30;21	y	0.35	21	39.5	21	35;44	y	0.52	28	26.0	28	27;25	y	0.48	32	34.0	32	30;38	y	0.47	19	21.0	19	26;16	y	0.51	43	41.5	43	48;35	y	0.56	22	17.5	22	15;20	y	0.56	25	20.0	25	22;18	y	0.53	40	35.0	40	45;25	y	0.42	30	41.0	30	41;41	y	0.60	30	20.0	30	20;20	y	ENSMUSG00000024958.14	Gpr137	chr19	protein_coding	G protein-coupled receptor 137
known_NIR_10052	chr19	6916778	6917720	-	6917122	6917720	3pMXE	ENSMUST00000235363.2	known	0.50	27	27	27	27	y	0.64	37	21	37	21	y	0.32	21	44	21	44	y	0.53	28	25	28	25	y	0.46	32	38	32	38	y	0.54	19	16	19	16	y	0.55	43	35	43	35	y	0.52	22	20	22	20	y	0.58	25	18	25	18	y	0.62	40	25	40	25	y	0.42	30	41	30	41	y	0.60	30	20	30	20	y	ENSMUSG00000024958.14	Gpr137	chr19	protein_coding	G protein-coupled receptor 137
known_NIR_10053	chr19	6916778;6917054	6916897;6917720	-	6916778	6917720	cassetteExon	ENSMUST00000099774.10	known	0.40	18.0	27	35;1	27	n	0.29	15.0	37	30;0	37	n	0.45	17.5	21	35;0	21	n	0.33	13.5	28	27;0	28	n	0.32	15.0	32	30;0	32	n	0.41	13.0	19	26;0	19	n	0.37	25.0	43	48;2	43	y	0.25	7.5	22	15;0	22	n	0.31	11.0	25	22;0	25	n	0.36	22.5	40	45;0	40	n	0.41	20.5	30	41;0	30	n	0.25	10.0	30	20;0	30	n	ENSMUSG00000024958.14	Gpr137	chr19	protein_coding	G protein-coupled receptor 137
known_NIR_10054	chr19	6917054	6917720	-	6917122	6917720	A3SS	ENSMUST00000166115.9	known	0.04	1	27	1	27	n	0.00	0	21	0	21	n	0.00	0	44	0	44	n	0.00	0	25	0	25	n	0.00	0	38	0	38	n	0.00	0	16	0	16	n	0.05	2	35	2	35	y	0.00	0	20	0	20	n	0.00	0	18	0	18	n	0.00	0	25	0	25	n	0.00	0	41	0	41	n	0.00	0	20	0	20	n	ENSMUSG00000024958.14	Gpr137	chr19	protein_coding	G protein-coupled receptor 137
known_NIR_10055	chr19	6917850	6918460	-	6917850	6919292	A5SS	ENSMUST00000099782.10	known	0.88	21	3	21	3	y	0.81	17	4	17	4	y	0.97	35	1	35	1	n	0.77	23	7	23	7	y	0.90	26	3	26	3	y	0.85	35	6	35	6	y	0.90	45	5	45	5	y	0.83	15	3	15	3	y	0.93	14	1	14	1	n	0.91	30	3	30	3	y	0.76	29	9	29	9	y	0.80	20	5	20	5	y	ENSMUSG00000024958.14	Gpr137	chr19	protein_coding	G protein-coupled receptor 137
known_NIR_10056	chr19	6917850	6918460	-	6917850	6919365	A5SS	ENSMUST00000236348.2	known	1.00	21	0	21	0	n	0.94	17	1	17	1	n	0.95	35	2	35	2	y	0.96	23	1	23	1	n	0.96	26	1	26	1	n	0.97	35	1	35	1	n	1.00	45	0	45	0	n	0.88	15	2	15	2	y	1.00	14	0	14	0	n	0.88	30	4	30	4	y	0.97	29	1	29	1	n	1.00	20	0	20	0	n	ENSMUSG00000024958.14	Gpr137	chr19	protein_coding	G protein-coupled receptor 137
known_NIR_10057	chr19	6919992	6920235	+	6919808	6920235	A5SS	ENSMUST00000025910.13	known	0.48	12	13	12	13	y	0.52	16	15	16	15	y	0.59	24	17	24	17	y	0.51	20	19	20	19	y	0.53	20	18	20	18	y	0.43	9	12	9	12	y	0.47	27	30	27	30	y	0.44	16	20	16	20	y	0.33	9	18	9	18	y	0.48	24	26	24	26	y	0.53	20	18	20	18	y	0.33	16	32	16	32	y	ENSMUSG00000024959.15	Bad	chr19	protein_coding	BCL2-associated agonist of cell death
known_NIR_10058	chr19	6928198	6928317	+	6928198	6928767	A3SS	ENSMUST00000025910.13	known	0.00	0	129	0	129	n	0.00	0	101	0	101	n	0.00	0	110	0	110	n	0.01	1	108	1	108	n	0.02	3	170	3	170	y	0.00	0	78	0	78	n	0.00	0	146	0	146	n	0.00	0	73	0	73	n	0.00	0	77	0	77	n	0.00	0	152	0	152	n	0.00	0	94	0	94	n	0.00	0	109	0	109	n	ENSMUSG00000024959.15	Bad	chr19	protein_coding	BCL2-associated agonist of cell death
known_NIR_10059	chr19	6928198	6928639	+	6928198	6928767	A3SS	ENSMUST00000025910.13	known	0.00	0	129	0	129	n	0.00	0	101	0	101	n	0.00	0	110	0	110	n	0.00	0	108	0	108	n	0.01	2	170	2	170	y	0.00	0	78	0	78	n	0.00	0	146	0	146	n	0.00	0	73	0	73	n	0.00	0	77	0	77	n	0.01	1	152	1	152	n	0.00	0	94	0	94	n	0.00	0	109	0	109	n	ENSMUSG00000024959.15	Bad	chr19	protein_coding	BCL2-associated agonist of cell death
known_NIR_10060	chr19	6942765	6942875	-	6942765	6942877	A5SS	ENSMUST00000025912.10	known	0.00	0	19	0	19	n	0.00	0	18	0	18	n	0.00	0	28	0	28	n	0.00	0	16	0	16	n	0.03	1	37	1	37	n	0.00	0	18	0	18	n	0.11	2	17	2	17	y	0.00	0	17	0	17	n	0.00	0	26	0	26	n	0.00	0	23	0	23	n	0.04	1	25	1	25	n	0.00	0	21	0	21	n	ENSMUSG00000024960.10	Plcb3	chr19	protein_coding	phospholipase C, beta 3
known_NIR_10061	chr19	6944077	6946753	-	6944077	6946915	A5SS	ENSMUST00000025912.10	known	0.00	0	16	0	16	n	0.00	0	3	0	3	n	0.11	2	17	2	17	y	0.07	1	13	1	13	n	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.09	1	10	1	10	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.11	2	17	2	17	y	ENSMUSG00000024960.10	Plcb3	chr19	protein_coding	phospholipase C, beta 3
known_NIR_10062	chr19	6952985	6953912	+	6952874	6953912	A5SS	ENSMUST00000070850.8	known	0.01	2	145	2	145	y	0.05	9	184	9	184	y	0.03	7	272	7	272	y	0.03	4	126	4	126	y	0.03	7	195	7	195	y	0.05	6	124	6	124	y	0.02	3	168	3	168	y	0.02	3	142	3	142	y	0.00	0	110	0	110	n	0.01	2	165	2	165	y	0.02	3	142	3	142	y	0.01	1	116	1	116	n	ENSMUSG00000056612.8	Ppp1r14b	chr19	protein_coding	protein phosphatase 1, regulatory inhibitor subunit 14B
known_NIR_10063	chr19	6953995	6954283	+	6953995	6954226	A3SS&ES	ENSMUST00000070850.8	known	0.01	1	165	1	165	n	0.00	0	204	0	204	n	0.01	2	241	2	241	y	0.00	0	118	0	118	n	0.00	0	230	0	230	n	0.02	2	130	2	130	y	0.00	1	234	1	234	n	0.01	1	123	1	123	n	0.00	0	137	0	137	n	0.00	0	172	0	172	n	0.01	1	167	1	167	n	0.00	0	151	0	151	n	ENSMUSG00000056612.8	Ppp1r14b	chr19	protein_coding	protein phosphatase 1, regulatory inhibitor subunit 14B
known_NIR_10064	chr19	6956509	6956682	-	6956509	6957762	A5SS	ENSMUST00000177752.9	known	0.01	2	141	2	141	y	0.04	6	163	6	163	y	0.06	10	169	10	169	y	0.02	3	144	3	144	y	0.02	6	259	6	259	y	0.02	2	114	2	114	y	0.03	7	195	7	195	y	0.04	4	96	4	96	y	0.02	3	143	3	143	y	0.00	0	202	0	202	n	0.03	5	147	5	147	y	0.03	4	154	4	154	y	ENSMUSG00000056629.17	Fkbp2	chr19	protein_coding	FK506 binding protein 2
known_NIR_10065	chr19	6956509	6956682	-	6956545	6956682	A3SS	ENSMUST00000238181.2	known	0.18	2	9	2	9	y	0.32	6	13	6	13	y	0.42	10	14	10	14	y	0.30	3	7	3	7	y	0.35	6	11	6	11	y	0.17	2	10	2	10	y	0.37	7	12	7	12	y	0.27	4	11	4	11	y	0.19	3	13	3	13	y	0.00	0	17	0	17	n	0.45	5	6	5	6	y	0.29	4	10	4	10	y	ENSMUSG00000056629.17	Fkbp2	chr19	protein_coding	FK506 binding protein 2
known_NIR_10066	chr19	6956509	6957762	-	6956545	6957762	A3SS	ENSMUST00000070878.9	known	0.78	141	39	141	39	y	0.83	163	33	163	33	y	0.84	169	33	169	33	y	0.80	144	37	144	37	y	0.82	259	58	259	58	y	0.84	114	22	114	22	y	0.77	195	57	195	57	y	0.87	96	14	96	14	y	0.79	143	38	143	38	y	0.79	202	55	202	55	y	0.76	147	46	147	46	y	0.77	154	45	154	45	y	ENSMUSG00000056629.17	Fkbp2	chr19	protein_coding	FK506 binding protein 2
known_NIR_10067	chr19	6956545	6956682	-	6956545	6957762	A5SS	ENSMUST00000070878.9	known	0.19	9	39	9	39	y	0.28	13	33	13	33	y	0.30	14	33	14	33	y	0.16	7	37	7	37	y	0.16	11	58	11	58	y	0.31	10	22	10	22	y	0.17	12	57	12	57	y	0.44	11	14	11	14	y	0.25	13	38	13	38	y	0.24	17	55	17	55	y	0.12	6	46	6	46	y	0.18	10	45	10	45	y	ENSMUSG00000056629.17	Fkbp2	chr19	protein_coding	FK506 binding protein 2
known_NIR_10068	chr19	6962964	6963173	-	6962863	6963173	A3SS	ENSMUST00000130048.8	known	0.33	17	35	17	35	y	0.49	31	32	31	32	y	0.31	17	38	17	38	y	0.50	17	17	17	17	y	0.45	18	22	18	22	y	0.42	5	7	5	7	y	0.43	45	60	45	60	y	0.52	17	16	17	16	y	0.38	22	36	22	36	y	0.41	40	58	40	58	y	0.39	26	40	26	40	y	0.44	34	44	34	44	y	ENSMUSG00000024962.14	Vegfb	chr19	protein_coding	vascular endothelial growth factor B
known_NIR_10069	chr19	6966955	6967049	-	6966952	6967049	A3SS	ENSMUST00000179118.2	known	0.87	40	6	40	6	y	0.81	34	8	34	8	y	0.83	35	7	35	7	y	0.84	31	6	31	6	y	0.71	37	15	37	15	y	0.76	25	8	25	8	y	0.81	63	15	63	15	y	0.66	25	13	25	13	y	0.87	33	5	33	5	y	0.73	38	14	38	14	y	0.76	37	12	37	12	y	0.82	41	9	41	9	y	ENSMUSG00000024963.13	Dnajc4	chr19	protein_coding	DnaJ heat shock protein family (Hsp40) member C4
known_NIR_10070	chr19	6968199	6969527	-	6968179	6969527	A3SS	ENSMUST00000179118.2	known	0.00	0	30	0	30	n	0.00	0	26	0	26	n	0.00	0	39	0	39	n	0.00	0	23	0	23	n	0.00	0	36	0	36	n	0.00	0	16	0	16	n	0.00	0	43	0	43	n	0.00	0	12	0	12	n	0.00	0	28	0	28	n	0.00	0	26	0	26	n	0.08	2	24	2	24	y	0.00	0	24	0	24	n	ENSMUSG00000024963.13	Dnajc4	chr19	protein_coding	DnaJ heat shock protein family (Hsp40) member C4
known_NIR_10071	chr19	6974145;6975470	6975301;6975560	+	6974145	6975560	cassetteExon	ENSMUST00000237234.2	known	0.54	9.5	8	10;9	8	y	0.71	14.5	6	11;18	6	y	0.52	6.5	6	6;7	6	y	0.46	11.0	13	8;14	13	y	0.88	23.0	3	22;24	3	y	0.62	8.0	5	8;8	5	y	0.49	15.5	16	12;19	16	y	0.91	10.0	1	6;14	1	n	0.46	8.5	10	7;10	10	y	0.55	16.0	13	16;16	13	y	0.51	10.5	10	8;13	10	y	0.58	16.5	12	13;20	12	y	ENSMUSG00000047656.10	Trpt1	chr19	protein_coding	tRNA phosphotransferase 1
known_NIR_10072	chr19	7181816	7183012	-	7181816	7183567	A5SS	ENSMUST00000025679.11	known	0.00	0	106	0	106	n	0.02	2	93	2	93	y	0.02	2	113	2	113	y	0.03	3	100	3	100	y	0.01	1	135	1	135	n	0.00	0	57	0	57	n	0.00	0	149	0	149	n	0.00	0	82	0	82	n	0.00	0	90	0	90	n	0.01	2	135	2	135	y	0.00	0	92	0	92	n	0.00	0	124	0	124	n	ENSMUSG00000024767.12	Otub1	chr19	protein_coding	OTU domain, ubiquitin aldehyde binding 1
known_NIR_10073	chr19	7254815	7258363	-	7254815	7255407	5pMXE	ENSMUST00000171044.2	known	0.00	0	29	0	29	n	0.00	0	22	0	22	n	0.00	0	43	0	43	n	0.00	0	29	0	29	n	0.00	0	38	0	38	n	0.00	0	27	0	27	n	0.00	0	49	0	49	n	0.00	0	22	0	22	n	0.00	0	23	0	23	n	0.00	0	42	0	42	n	0.06	2	30	2	30	y	0.00	0	33	0	33	n	ENSMUSG00000024969.16	Mark2	chr19	protein_coding	MAP/microtubule affinity regulating kinase 2
known_NIR_10074	chr19	7254815	7258363	-	7254815;7255451	7255407;7258363	ES	ENSMUST00000164205.8	known	0.00	0	20.0	0	29;11	n	0.00	0	18.5	0	22;15	n	0.00	0	35.5	0	43;28	n	0.00	0	28.0	0	29;27	n	0.00	0	26.0	0	38;14	n	0.00	0	18.5	0	27;10	n	0.00	0	33.0	0	49;17	n	0.00	0	19.0	0	22;16	n	0.00	0	19.5	0	23;16	n	0.00	0	34.5	0	42;27	n	0.08	2	23.0	2	30;16	y	0.00	0	26.0	0	33;19	n	ENSMUSG00000024969.16	Mark2	chr19	protein_coding	MAP/microtubule affinity regulating kinase 2
known_NIR_10075	chr19	7255451	7258363	-	7255451;7257377	7257351;7258363	ES	ENSMUST00000032557.15	known	0.65	11	6.0	11	6;6	y	0.86	15	2.5	15	2;3	y	0.84	28	5.5	28	3;8	y	0.95	27	1.5	27	1;2	n	0.51	14	13.5	14	15;12	y	0.71	10	4.0	10	3;5	y	0.65	17	9.0	17	7;11	y	0.80	16	4.0	16	4;4	y	0.97	16	0.5	16	0;1	n	0.95	27	1.5	27	1;2	n	0.80	16	4.0	16	3;5	y	0.64	19	10.5	19	10;11	y	ENSMUSG00000024969.16	Mark2	chr19	protein_coding	MAP/microtubule affinity regulating kinase 2
known_NIR_10076	chr19	7255451;7256643	7256476;7257351	-	7255451	7257351	cassetteExon	ENSMUST00000032557.15	known	0.33	3.0	6	4;2	6	y	0.00	0.0	2	0;0	2	n	0.40	2.0	3	1;3	3	n	0.50	1.0	1	2;0	1	n	0.09	1.5	15	2;1	15	n	0.25	1.0	3	0;2	3	n	0.18	1.5	7	2;1	7	n	0.11	0.5	4	0;1	4	n	-	-	-	-	-	-	0.00	0.0	1	0;0	1	n	0.00	0.0	3	0;0	3	n	0.13	1.5	10	2;1	10	n	ENSMUSG00000024969.16	Mark2	chr19	protein_coding	MAP/microtubule affinity regulating kinase 2
known_NIR_10077	chr19	7258620	7260091	-	7258620	7259163	5pMXE	ENSMUST00000163345.2	known	0.85	11	2	11	2	y	0.89	16	2	16	2	y	0.67	14	7	14	7	y	0.50	7	7	7	7	y	0.76	13	4	13	4	y	0.82	9	2	9	2	y	0.38	3	5	3	5	n	0.78	7	2	7	2	n	0.54	7	6	7	6	y	0.56	5	4	5	4	n	0.80	12	3	12	3	y	0.67	8	4	8	4	y	ENSMUSG00000024969.16	Mark2	chr19	protein_coding	MAP/microtubule affinity regulating kinase 2
known_NIR_10078	chr19	7258620;7259324	7259163;7260091	-	7258620	7260091	cassetteExon	ENSMUST00000032557.15	known	0.33	5.5	11	2;9	11	y	0.20	4.0	16	2;6	16	y	0.38	8.5	14	7;10	14	y	0.39	4.5	7	7;2	7	y	0.49	12.5	13	4;21	13	y	0.25	3.0	9	2;4	9	y	0.70	7.0	3	5;9	3	y	0.26	2.5	7	2;3	7	y	0.48	6.5	7	6;7	7	y	0.58	7.0	5	4;10	5	y	0.27	4.5	12	3;6	12	y	0.47	7.0	8	4;10	8	y	ENSMUSG00000024969.16	Mark2	chr19	protein_coding	MAP/microtubule affinity regulating kinase 2
known_NIR_10079	chr19	7260183	7260398	-	7260188	7260398	A3SS	ENSMUST00000032557.15	known	0.00	0	27	0	27	n	0.04	1	24	1	24	n	0.00	0	44	0	44	n	0.00	0	23	0	23	n	0.00	0	36	0	36	n	0.00	0	21	0	21	n	0.06	2	32	2	32	y	0.04	1	22	1	22	n	0.00	0	27	0	27	n	0.00	0	31	0	31	n	0.04	1	22	1	22	n	0.00	0	26	0	26	n	ENSMUSG00000024969.16	Mark2	chr19	protein_coding	MAP/microtubule affinity regulating kinase 2
known_NIR_10080	chr19	7268147	7319132	-	7268147	7318533	A5SS	ENSMUST00000032557.15	known	0.06	1	16	1	16	n	0.14	1	6	1	6	n	0.14	2	12	2	12	y	0.00	0	8	0	8	n	0.25	4	12	4	12	y	0.00	0	16	0	16	n	0.10	1	9	1	9	n	0.15	2	11	2	11	y	0.00	0	8	0	8	n	0.00	0	18	0	18	n	0.09	1	10	1	10	n	0.00	0	10	0	10	n	ENSMUSG00000024969.16	Mark2	chr19	protein_coding	MAP/microtubule affinity regulating kinase 2
known_NIR_10081	chr19	7471726	7486713	+	7472026	7486713	5pMXE	ENSMUST00000235260.2	known	0.00	0	35	0	35	n	0.00	0	15	0	15	n	0.05	2	37	2	37	y	0.00	0	79	0	79	n	0.01	1	69	1	69	n	0.10	2	19	2	19	y	0.02	1	57	1	57	n	0.03	1	36	1	36	n	0.00	0	51	0	51	n	0.00	0	62	0	62	n	0.00	0	42	0	42	n	0.00	0	72	0	72	n	ENSMUSG00000024759.15	Atl3	chr19	protein_coding	atlastin GTPase 3
known_NIR_10082	chr19	7535167	7535297	+	7534929	7535297	A5SS	ENSMUST00000136465.8	known	0.03	1	30	1	30	n	0.00	0	29	0	29	n	0.00	0	28	0	28	n	0.00	0	29	0	29	n	0.00	0	35	0	35	n	0.00	0	16	0	16	n	0.03	2	62	2	62	y	0.00	0	11	0	11	n	0.11	2	17	2	17	y	0.08	4	46	4	46	y	0.00	0	35	0	35	n	0.05	1	21	1	21	n	ENSMUSG00000060675.14	Plaat3	chr19	protein_coding	phospholipase A and acyltransferase 3
known_NIR_10083	chr19	8313185	8314087	-	8313185	8321872	A5SS	ENSMUST00000064507.12	known	0.98	549	13	549	13	y	0.98	515	11	515	11	y	0.95	69	4	69	4	y	0.98	525	9	525	9	y	0.98	450	8	450	8	y	0.98	49	1	49	1	n	0.98	564	11	564	11	y	0.94	134	8	134	8	y	0.98	694	13	694	13	y	0.97	891	23	891	23	y	0.99	904	8	904	8	y	0.98	802	20	802	20	y	ENSMUSG00000052562.16	Slc22a30	chr19	protein_coding	solute carrier family 22, member 30
known_NIR_10084	chr19	8315343	8321872	-	8313185	8321872	A3SS	ENSMUST00000064507.12	known	0.90	115	13	115	13	y	0.92	125	11	125	11	y	0.83	20	4	20	4	y	0.95	155	9	155	9	y	0.92	88	8	88	8	y	0.92	12	1	12	1	n	0.92	120	11	120	11	y	0.70	19	8	19	8	y	0.93	177	13	177	13	y	0.91	233	23	233	23	y	0.96	192	8	192	8	y	0.92	223	20	223	20	y	ENSMUSG00000052562.16	Slc22a30	chr19	protein_coding	solute carrier family 22, member 30
known_NIR_10085	chr19	8321777	8321872	-	8313185	8321872	A3SS	ENSMUST00000064507.12	known	0.82	61	13	61	13	y	0.82	50	11	50	11	y	0.76	13	4	13	4	y	0.90	80	9	80	9	y	0.91	85	8	85	8	y	0.88	7	1	7	1	n	0.86	65	11	65	11	y	0.64	14	8	14	8	y	0.86	77	13	77	13	y	0.77	75	23	75	23	y	0.93	99	8	99	8	y	0.85	112	20	112	20	y	ENSMUSG00000052562.16	Slc22a30	chr19	protein_coding	solute carrier family 22, member 30
known_NIR_10086	chr19	8321777	8321872	-	8315343	8321872	A3SS	ENSMUST00000096269.11	known	0.35	61	115	61	115	y	0.29	50	125	50	125	y	0.39	13	20	13	20	y	0.34	80	155	80	155	y	0.49	85	88	85	88	y	0.37	7	12	7	12	y	0.35	65	120	65	120	y	0.42	14	19	14	19	y	0.30	77	177	77	177	y	0.24	75	233	75	233	y	0.34	99	192	99	192	y	0.33	112	223	112	223	y	ENSMUSG00000052562.16	Slc22a30	chr19	protein_coding	solute carrier family 22, member 30
known_NIR_10087	chr19	8691116	8691325	-	8691116	8700348	A5SS	ENSMUST00000170157.8	known	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.00	0	20	0	20	n	0.00	0	19	0	19	n	0.00	0	21	0	21	n	0.00	0	10	0	10	n	0.11	2	17	2	17	y	0.00	0	21	0	21	n	0.00	0	8	0	8	n	0.00	0	16	0	16	n	0.00	0	20	0	20	n	0.00	0	11	0	11	n	ENSMUSG00000010095.14	Slc3a2	chr19	protein_coding	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2
known_NIR_10088	chr19	8703288	8703431	+	8703190	8703431	A5SS	ENSMUST00000206155.2	known	0.00	0	44	0	44	n	0.00	0	54	0	54	n	0.02	1	46	1	46	n	0.00	0	30	0	30	n	0.00	0	44	0	44	n	0.00	0	27	0	27	n	0.00	0	47	0	47	n	0.00	0	26	0	26	n	0.00	0	37	0	37	n	0.04	2	43	2	43	y	0.00	0	44	0	44	n	0.00	0	59	0	59	n	ENSMUSG00000108414.2	Snhg1	chr19	lncRNA	small nucleolar RNA host gene 1
known_NIR_10089	chr19	8713269	8713540	+	8713269	8713351	A3SS	ENSMUST00000210592.3	known	0.02	1	54	1	54	n	0.00	0	48	0	48	n	0.03	3	115	3	115	y	0.00	0	61	0	61	n	0.02	2	91	2	91	y	0.00	0	41	0	41	n	0.02	2	90	2	90	y	0.00	0	46	0	46	n	0.02	1	60	1	60	n	0.00	0	70	0	70	n	0.03	2	58	2	58	y	0.00	0	51	0	51	n	ENSMUSG00000042729.12	Wdr74	chr19	protein_coding	WD repeat domain 74
known_NIR_10090	chr19	8713269	8713540	+	8713269;8713457	8713351;8713540	ES	ENSMUST00000210512.2	known	0.02	1	50.5	1	54;47	n	0.00	0	45.5	0	48;43	n	0.03	3	107.5	3	115;100	y	0.00	0	63.0	0	61;65	n	0.02	2	87.0	2	91;83	y	0.00	0	52.0	0	41;63	n	0.02	2	84.5	2	90;79	y	0.00	0	47.5	0	46;49	n	0.02	1	53.0	1	60;46	n	0.00	0	68.0	0	70;66	n	0.03	2	65.0	2	58;72	y	0.00	0	53.5	0	51;56	n	ENSMUSG00000042729.12	Wdr74	chr19	protein_coding	WD repeat domain 74
known_NIR_10091	chr19	8715358	8715517	+	8715226	8715517	A5SS	ENSMUST00000210512.2	known	1.00	83	0	83	0	n	1.00	73	0	73	0	n	0.99	103	1	103	1	n	1.00	59	0	59	0	n	1.00	89	0	89	0	n	0.96	51	2	51	2	y	1.00	61	0	61	0	n	1.00	44	0	44	0	n	1.00	49	0	49	0	n	1.00	62	0	62	0	n	1.00	68	0	68	0	n	0.98	52	1	52	1	n	ENSMUSG00000042729.12	Wdr74	chr19	protein_coding	WD repeat domain 74
known_NIR_10092	chr19	8719159	8719618	+	8718939	8719618	A5SS	ENSMUST00000177322.8	known	0.00	0	67	0	67	n	0.00	0	37	0	37	n	0.03	2	73	2	73	y	0.00	0	60	0	60	n	0.00	0	104	0	104	n	0.02	1	48	1	48	n	0.00	0	68	0	68	n	0.00	0	59	0	59	n	0.00	0	43	0	43	n	0.00	0	70	0	70	n	0.00	0	53	0	53	n	0.00	0	57	0	57	n	ENSMUSG00000010110.18	Stx5a	chr19	protein_coding	syntaxin 5A
known_NIR_10093	chr19	8719518	8719618	+	8718939	8719618	A5SS	ENSMUST00000177322.8	known	0.06	4	67	4	67	y	0.18	8	37	8	37	y	0.09	7	73	7	73	y	0.06	4	60	4	60	y	0.12	14	104	14	104	y	0.14	8	48	8	48	y	0.08	6	68	6	68	y	0.19	14	59	14	59	y	0.00	0	43	0	43	n	0.04	3	70	3	70	y	0.12	7	53	7	53	y	0.10	6	57	6	57	y	ENSMUSG00000010110.18	Stx5a	chr19	protein_coding	syntaxin 5A
known_NIR_10094	chr19	8720866	8725825	+	8720787	8725825	A5SS	ENSMUST00000177322.8	known	0.00	0	170	0	170	n	0.01	1	107	1	107	n	0.01	2	190	2	190	y	0.02	2	110	2	110	y	0.00	1	211	1	211	n	0.00	0	122	0	122	n	0.00	0	124	0	124	n	0.03	4	117	4	117	y	0.00	0	90	0	90	n	0.01	2	132	2	132	y	0.02	2	91	2	91	y	0.01	2	134	2	134	y	ENSMUSG00000010110.18	Stx5a	chr19	protein_coding	syntaxin 5A
known_NIR_10095	chr19	8746025	8746407	+	8746025	8746365	A3SS	ENSMUST00000010241.14	known	0.00	0	126	0	126	n	0.00	0	135	0	135	n	0.00	0	167	0	167	n	0.03	3	96	3	96	y	0.04	7	172	7	172	y	0.00	0	89	0	89	n	0.00	0	162	0	162	n	0.00	0	91	0	91	n	0.00	0	98	0	98	n	0.00	0	128	0	128	n	0.00	0	127	0	127	n	0.00	0	136	0	136	n	ENSMUSG00000010097.16	Nxf1	chr19	protein_coding	nuclear RNA export factor 1
known_NIR_10096	chr19	8750470;8750986	8750654;8751699	-	8750470	8751699	cassetteExon	ENSMUST00000235756.2	known	0.76	34.5	11	56;13	11	y	0.80	44.5	11	84;5	11	y	0.95	59.0	3	110;8	3	y	0.77	40.0	12	72;8	12	y	0.88	58.0	8	110;6	8	y	0.84	30.5	6	56;5	6	y	0.82	51.5	11	92;11	11	y	0.71	27.0	11	52;2	11	y	0.89	33.0	4	60;6	4	y	0.85	56.5	10	105;8	10	y	0.81	47.0	11	90;4	11	y	0.84	42.5	8	74;11	8	y	ENSMUSG00000118346.2	Tmem179b	chr19	protein_coding	transmembrane protein 179B
known_NIR_10097	chr19	8750470;8751056	8750654;8751699	-	8750470	8751699	cassetteExon	ENSMUST00000235756.2	known	0.82	50.5	11	56;45	11	y	0.84	57.5	11	84;31	11	y	0.97	87.0	3	110;64	3	y	0.83	58.5	12	72;45	12	y	0.91	80.5	8	110;51	8	y	0.88	44.0	6	56;32	6	y	0.87	72.0	11	92;52	11	y	0.77	36.0	11	52;20	11	y	0.92	46.5	4	60;33	4	y	0.88	71.5	10	105;38	10	y	0.85	63.5	11	90;37	11	y	0.88	57.5	8	74;41	8	y	ENSMUSG00000118346.2	Tmem179b	chr19	protein_coding	transmembrane protein 179B
known_NIR_10098	chr19	8751056	8751699	-	8750986	8751699	A3SS	ENSMUST00000237634.2	known	0.78	45	13	45	13	y	0.86	31	5	31	5	y	0.89	64	8	64	8	y	0.85	45	8	45	8	y	0.89	51	6	51	6	y	0.86	32	5	32	5	y	0.83	52	11	52	11	y	0.91	20	2	20	2	y	0.85	33	6	33	6	y	0.83	38	8	38	8	y	0.90	37	4	37	4	y	0.79	41	11	41	11	y	ENSMUSG00000118346.2	Tmem179b	chr19	protein_coding	transmembrane protein 179B
known_NIR_10099	chr19	8762542	8762997	-	8762542	8763574	A5SS	ENSMUST00000176610.9	known	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.08	1	12	1	12	n	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.46	6	7	6	7	y	ENSMUSG00000003680.17	Taf6l	chr19	protein_coding	TATA-box binding protein associated factor 6 like
known_NIR_10100	chr19	8771894	8775588	-	8771894;8774759	8774600;8775588	ES	ENSMUST00000096261.5	known	0.01	1	75.5	1	82;69	n	0.06	3	50.5	3	70;31	y	0.02	1	61.0	1	61;61	n	0.00	0	55.5	0	57;54	n	0.00	0	91.0	0	93;89	n	0.00	0	44.0	0	54;34	n	0.06	4	64.0	4	76;52	y	0.02	1	41.0	1	46;36	n	0.00	0	56.0	0	56;56	n	0.00	0	86.5	0	101;72	n	0.05	4	73.0	4	86;60	y	0.01	1	66.0	1	81;51	n	ENSMUSG00000071662.5	Polr2g	chr19	protein_coding	polymerase (RNA) II (DNA directed) polypeptide G
known_NIR_10101	chr19	8775503	8775588	-	8774759	8775588	A3SS	ENSMUST00000096261.5	known	0.04	3	69	3	69	y	0.00	0	31	0	31	n	0.02	1	61	1	61	n	0.00	0	54	0	54	n	0.00	0	89	0	89	n	0.00	0	34	0	34	n	0.02	1	52	1	52	n	0.03	1	36	1	36	n	0.00	0	56	0	56	n	0.00	0	72	0	72	n	0.00	0	60	0	60	n	0.00	0	51	0	51	n	ENSMUSG00000071662.5	Polr2g	chr19	protein_coding	polymerase (RNA) II (DNA directed) polypeptide G
known_NIR_10102	chr19	8789202	8795800	-	8789202;8793400	8793218;8795800	ES	ENSMUST00000096751.11	known	0.00	0	22.5	0	26;19	n	0.00	0	19.5	0	19;20	n	0.05	2	39.0	2	48;30	y	0.00	0	35.0	0	38;32	n	0.00	0	41.0	0	43;39	n	0.00	0	15.5	0	16;15	n	0.00	0	40.5	0	41;40	n	0.00	0	21.5	0	30;13	n	0.03	1	28.5	1	31;26	n	0.03	1	38.5	1	33;44	n	0.00	0	26.5	0	24;29	n	0.05	2	38.0	2	40;36	y	ENSMUSG00000071660.11	Ttc9c	chr19	protein_coding	tetratricopeptide repeat domain 9C
known_NIR_10103	chr19	8817932	8818472	+	8817148	8818472	A5SS	ENSMUST00000237654.2	known	0.77	50	15	50	15	y	0.79	37	10	37	10	y	0.82	40	9	40	9	y	0.83	53	11	53	11	y	0.76	71	23	71	23	y	0.73	33	12	33	12	y	0.71	57	23	57	23	y	0.79	23	6	23	6	y	0.65	37	20	37	20	y	0.65	60	33	60	33	y	0.74	51	18	51	18	y	0.75	56	19	56	19	y	ENSMUSG00000118124.2	Gm50139	chr19	protein_coding	predicted gene, 50139
known_NIR_10104	chr19	8824911	8825278	+	8824911	8825031	A3SS	ENSMUST00000159571.8	known	0.00	0	123	0	123	n	0.00	0	154	0	154	n	0.00	0	103	0	103	n	0.02	2	124	2	124	y	0.00	0	188	0	188	n	0.00	0	93	0	93	n	0.00	0	195	0	195	n	0.00	0	101	0	101	n	0.00	0	145	0	145	n	0.00	0	212	0	212	n	0.00	0	185	0	185	n	0.00	0	140	0	140	n	ENSMUSG00000071657.13	Bscl2	chr19	protein_coding	Berardinelli-Seip congenital lipodystrophy 2 (seipin)
known_NIR_10105	chr19	8824911	8825278	+	8824911;8825097	8825031;8825278	ES	ENSMUST00000171649.8	known	0.00	0	145.5	0	123;168	n	0.00	0	172.5	0	154;191	n	0.00	0	118.0	0	103;133	n	0.01	2	143.5	2	124;163	y	0.00	0	223.0	0	188;258	n	0.00	0	96.5	0	93;100	n	0.00	0	224.5	0	195;254	n	0.00	0	99.5	0	101;98	n	0.00	0	161.5	0	145;178	n	0.00	0	229.0	0	212;246	n	0.00	0	208.0	0	185;231	n	0.00	0	152.0	0	140;164	n	ENSMUSG00000071657.13	Bscl2	chr19	protein_coding	Berardinelli-Seip congenital lipodystrophy 2 (seipin)
known_NIR_10106	chr19	8866612	8867367	+	8867091	8867367	A5SS	ENSMUST00000187037.7	known	0.89	163	21	163	21	y	0.91	147	15	147	15	y	0.94	171	11	171	11	y	0.95	185	9	185	9	y	0.95	175	9	175	9	y	0.95	109	6	109	6	y	0.93	217	16	217	16	y	0.98	110	2	110	2	y	0.94	117	8	117	8	y	0.93	163	13	163	13	y	0.93	148	11	148	11	y	0.94	146	10	146	10	y	ENSMUSG00000071653.10	1810009A15Rik	chr19	protein_coding	RIKEN cDNA 1810009A15 gene
known_NIR_10107	chr19	8866612;8867091	8867001;8867367	+	8866612	8867367	cassetteExon	ENSMUST00000187504.7	known	0.12	21.5	163	22;21	163	y	0.06	9.5	147	4;15	147	y	0.06	10.5	171	10;11	171	y	0.05	9.0	185	9;9	185	y	0.04	8.0	175	7;9	175	y	0.04	4.0	109	2;6	109	y	0.07	16.5	217	17;16	217	y	0.01	1.5	110	1;2	110	n	0.05	6.5	117	5;8	117	y	0.07	12.0	163	11;13	163	y	0.05	8.0	148	5;11	148	y	0.06	10.0	146	10;10	146	y	ENSMUSG00000096740.9	Lbhd1	chr19	protein_coding	LBH domain containing 1
known_NIR_10108	chr19	8866682	8867367	+	8866612	8867367	A5SS	ENSMUST00000187504.7	known	0.01	2	163	2	163	y	0.01	2	147	2	147	y	0.04	8	171	8	171	y	0.01	1	185	1	185	n	0.01	1	175	1	175	n	0.03	3	109	3	109	y	0.01	2	217	2	217	y	0.00	0	110	0	110	n	0.02	2	117	2	117	y	0.01	2	163	2	163	y	0.01	1	148	1	148	n	0.02	3	146	3	146	y	ENSMUSG00000096740.9	Lbhd1	chr19	protein_coding	LBH domain containing 1
known_NIR_10109	chr19	8867091	8867367	+	8866682	8867367	A5SS	ENSMUST00000190530.2	known	0.91	21	2	21	2	y	0.88	15	2	15	2	y	0.58	11	8	11	8	y	0.90	9	1	9	1	n	0.90	9	1	9	1	n	0.67	6	3	6	3	n	0.89	16	2	16	2	y	1.00	2	0	2	0	n	0.80	8	2	8	2	y	0.87	13	2	13	2	y	0.92	11	1	11	1	n	0.77	10	3	10	3	y	ENSMUSG00000096740.9	Lbhd1	chr19	protein_coding	LBH domain containing 1
known_NIR_10110	chr19	8884758	8886042	+	8884758;8885280	8885215;8886042	ES	ENSMUST00000096246.5	known	0.61	137	86.0	137	96;76	y	0.70	82	35.5	82	30;41	y	0.69	214	95.5	214	96;95	y	0.66	193	98.0	193	99;97	y	0.68	231	109.5	231	107;112	y	0.67	119	59.0	119	55;63	y	0.65	130	71.5	130	71;72	y	0.75	174	58.0	174	43;73	y	0.64	125	70.0	125	70;70	y	0.70	167	71.0	167	83;59	y	0.71	97	40.5	97	40;41	y	0.67	154	77.5	154	79;76	y	ENSMUSG00000071650.7	Ganab	chr19	protein_coding	alpha glucosidase 2 alpha neutral subunit
known_NIR_10111	chr19	8899344	8903068	+	8899344	8902902	A3SS	ENSMUST00000096243.7	known	0.17	12	59	12	59	y	0.16	12	64	12	64	y	0.16	18	92	18	92	y	0.11	7	59	7	59	y	0.10	15	133	15	133	y	0.13	12	83	12	83	y	0.09	11	109	11	109	y	0.08	8	94	8	94	y	0.11	7	55	7	55	y	0.09	9	88	9	88	y	0.13	9	62	9	62	y	0.15	13	72	13	72	y	ENSMUSG00000071649.7	B3gat3	chr19	protein_coding	beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)
known_NIR_10112	chr19	8908334	8908411	+	8908334	8908408	A3SS	ENSMUST00000096241.6	known	0.63	12	7	12	7	y	0.40	4	6	4	6	y	0.38	15	25	15	25	y	0.48	16	17	16	17	y	0.52	23	21	23	21	y	0.47	9	10	9	10	y	0.42	8	11	8	11	y	0.21	5	19	5	19	y	0.44	8	10	8	10	y	0.35	8	15	8	15	y	0.37	11	19	11	19	y	0.50	18	18	18	18	y	ENSMUSG00000071647.6	Eml3	chr19	protein_coding	echinoderm microtubule associated protein like 3
known_NIR_10113	chr19	8920083	8920829	+	8919746	8920829	A5SS	ENSMUST00000096240.3	known	0.00	0	48	0	48	n	0.03	1	35	1	35	n	0.00	0	59	0	59	n	0.00	0	52	0	52	n	0.03	2	74	2	74	y	0.03	1	33	1	33	n	0.05	3	61	3	61	y	0.03	1	37	1	37	n	0.00	0	37	0	37	n	0.00	0	46	0	46	n	0.00	0	49	0	49	n	0.02	1	61	1	61	n	ENSMUSG00000071646.10	Mta2	chr19	protein_coding	metastasis-associated gene family, member 2
known_NIR_10114	chr19	8920396	8920829	+	8919746	8920829	A5SS	ENSMUST00000096240.3	known	0.00	0	48	0	48	n	0.00	0	35	0	35	n	0.03	2	59	2	59	y	0.00	0	52	0	52	n	0.00	0	74	0	74	n	0.00	0	33	0	33	n	0.00	0	61	0	61	n	0.00	0	37	0	37	n	0.00	0	37	0	37	n	0.00	0	46	0	46	n	0.00	0	49	0	49	n	0.00	0	61	0	61	n	ENSMUSG00000071646.10	Mta2	chr19	protein_coding	metastasis-associated gene family, member 2
known_NIR_10115	chr19	8978227	9014523	+	8978227	8979063	3pMXE	ENSMUST00000092956.4	known	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	2	0	2	0	n	0.75	3	1	3	1	n	-	-	-	-	-	-	0.62	8	5	8	5	y	-	-	-	-	-	-	1.00	3	0	3	0	n	0.29	2	5	2	5	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000069833.14	Ahnak	chr19	protein_coding	AHNAK nucleoprotein (desmoyokin)
known_NIR_10116	chr19	9855792;9860567	9860556;9861063	-	9855792	9861063	cassetteExon	ENSMUST00000025562.9	known	0.67	2.0	1	2;2	1	n	1.00	8.0	0	10;6	0	n	-	-	-	-	-	-	0.67	4.0	2	4;4	2	y	0.62	6.5	4	5;8	4	y	0.00	0.0	1	0;0	1	n	0.50	1.0	1	0;2	1	n	0.45	2.5	3	2;3	3	n	1.00	1.5	0	1;2	0	n	-	-	-	-	-	-	1.00	2.5	0	2;3	0	n	0.00	0.0	1	0;0	1	n	ENSMUSG00000024660.10	Incenp	chr19	protein_coding	inner centromere protein
known_NIR_10117	chr19	9877384	9879881	+	9877384	9878232	3pMXE	ENSMUST00000235252.2	known	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.17	2	10	2	10	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	ENSMUSG00000118100.2	Gm50340	chr19	lncRNA	predicted gene, 50340
known_NIR_10118	chr19	9877384	9879881	+	9877384;9878441	9878232;9879881	ES	ENSMUST00000235986.2	known	0.00	0	5.0	0	5;5	n	0.00	0	4.5	0	6;3	n	0.00	0	6.0	0	9;3	n	0.00	0	5.0	0	7;3	n	0.00	0	8.0	0	12;4	n	0.00	0	8.0	0	9;7	n	0.18	2	9.0	2	10;8	y	0.00	0	2.5	0	5;0	n	0.00	0	2.5	0	0;5	n	0.00	0	9.5	0	15;4	n	0.00	0	6.0	0	5;7	n	0.00	0	5.5	0	2;9	n	ENSMUSG00000118100.2	Gm50340	chr19	lncRNA	predicted gene, 50340
known_NIR_10119	chr19	9960347	9961617	+	9960347	9961545	A3SS	ENSMUST00000235196.2	known	0.00	0	9261	0	9261	n	0.01	107	8850	107	8850	y	0.01	132	13607	132	13607	y	0.00	0	8303	0	8303	n	0.00	0	10076	0	10076	n	0.00	0	7408	0	7408	n	0.01	131	11955	131	11955	y	0.01	86	6406	86	6406	y	0.01	94	7755	94	7755	y	0.01	155	12015	155	12015	y	0.01	161	10864	161	10864	y	0.00	0	11282	0	11282	n	ENSMUSG00000024661.8	Fth1	chr19	protein_coding	ferritin heavy polypeptide 1
known_NIR_10120	chr19	9960538	9961545	+	9960347	9961545	A5SS	ENSMUST00000235196.2	known	0.00	0	9261	0	9261	n	0.00	0	8850	0	8850	n	0.00	5	13607	5	13607	y	0.00	0	8303	0	8303	n	0.00	0	10076	0	10076	n	0.00	0	7408	0	7408	n	0.00	0	11955	0	11955	n	0.00	0	6406	0	6406	n	0.00	0	7755	0	7755	n	0.00	0	12015	0	12015	n	0.00	0	10864	0	10864	n	0.00	0	11282	0	11282	n	ENSMUSG00000024661.8	Fth1	chr19	protein_coding	ferritin heavy polypeptide 1
known_NIR_10121	chr2	10060972;10061617	10061581;10063807	-	10060972	10063807	cassetteExon	ENSMUST00000026887.14	known	1.00	902.5	4	894;911	4	y	1.00	989.0	4	971;1007	4	y	0.99	553.0	7	556;550	7	y	1.00	775.0	2	765;785	2	y	0.99	780.5	5	773;788	5	y	1.00	334.0	1	326;342	1	n	0.89	1066.0	132	1075;1057	132	y	0.99	396.5	3	396;397	3	y	1.00	846.5	2	834;859	2	y	0.99	1336.5	8	1329;1344	8	y	1.00	1160.0	1	1153;1167	1	n	1.00	1129.5	4	1148;1111	4	y	ENSMUSG00000025781.15	Atp5c1	chr2	protein_coding	ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1
known_NIR_10122	chr2	10074538	10084715	-	10074538	10085159	A5SS	ENSMUST00000026887.14	known	0.00	1	668	1	668	n	0.01	3	525	3	525	y	0.00	0	472	0	472	n	0.00	0	836	0	836	n	0.00	0	772	0	772	n	0.01	2	334	2	334	y	0.00	1	878	1	878	n	0.00	0	395	0	395	n	0.00	2	679	2	679	y	0.00	2	1041	2	1041	y	0.00	1	714	1	714	n	0.00	1	962	1	962	n	ENSMUSG00000025781.15	Atp5c1	chr2	protein_coding	ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1
known_NIR_10123	chr2	10074538	10084831	-	10074538	10085159	A5SS	ENSMUST00000026887.14	known	0.00	1	668	1	668	n	0.00	0	525	0	525	n	0.00	0	472	0	472	n	0.00	1	836	1	836	n	0.00	0	772	0	772	n	0.00	0	334	0	334	n	0.00	1	878	1	878	n	0.00	0	395	0	395	n	0.00	0	679	0	679	n	0.00	0	1041	0	1041	n	0.00	2	714	2	714	y	0.00	3	962	3	962	y	ENSMUSG00000025781.15	Atp5c1	chr2	protein_coding	ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1
known_NIR_10124	chr2	10113750	10114292	-	10111645	10114292	A3SS	ENSMUST00000042290.14	known	0.02	35	1386	35	1386	y	0.02	22	998	22	998	y	0.04	115	3107	115	3107	y	0.01	23	1748	23	1748	y	0.01	20	2757	20	2757	y	0.02	34	2075	34	2075	y	0.01	23	1668	23	1668	y	0.02	24	1433	24	1433	y	0.02	32	1307	32	1307	y	0.02	34	1880	34	1880	y	0.02	23	1240	23	1240	y	0.01	32	2598	32	2598	y	ENSMUSG00000037254.19	Itih2	chr2	protein_coding	inter-alpha trypsin inhibitor, heavy chain 2
known_NIR_10125	chr2	10135462	10136135	-	10135462	10135812	5pMXE	ENSMUST00000155809.9	known	-	-	-	-	-	-	-	-	-	-	-	-	0.03	1	29	1	29	n	-	-	-	-	-	-	1.00	6	0	6	0	n	0.25	3	9	3	9	y	0.67	2	1	2	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	n	ENSMUSG00000037254.19	Itih2	chr2	protein_coding	inter-alpha trypsin inhibitor, heavy chain 2
known_NIR_10126	chr2	101392699	101406405	-	101392699	101406357	A5SS	ENSMUST00000111231.10	known	0.06	6	96	6	96	y	0.04	4	98	4	98	y	0.03	2	66	2	66	y	0.06	4	63	4	63	y	0.06	7	111	7	111	y	0.05	3	52	3	52	y	0.07	8	100	8	100	y	0.10	6	56	6	56	y	0.00	0	69	0	69	n	0.04	4	91	4	91	y	0.10	10	94	10	94	y	0.07	7	94	7	94	y	ENSMUSG00000027165.17	Iftap	chr2	protein_coding	intraflagellar transport associated protein
known_NIR_10127	chr2	101392699	101413866	-	101392699;101406496	101406357;101413866	ES	ENSMUST00000111231.10	known	0.03	3	93.5	3	96;91	y	0.03	3	86.5	3	98;75	y	0.00	0	71.0	0	66;76	n	0.01	1	73.5	1	63;84	n	0.00	0	105.0	0	111;99	n	0.00	0	58.5	0	52;65	n	0.01	1	115.0	1	100;130	n	0.04	2	52.5	2	56;49	y	0.01	1	71.0	1	69;73	n	0.00	0	103.0	0	91;115	n	0.00	0	93.5	0	94;93	n	0.00	0	99.0	0	94;104	n	ENSMUSG00000027165.17	Iftap	chr2	protein_coding	intraflagellar transport associated protein
known_NIR_10128	chr2	101392699	101413866	-	101406496	101413866	3pMXE	ENSMUST00000128898.3	known	0.03	3	91	3	91	y	0.04	3	75	3	75	y	0.00	0	76	0	76	n	0.01	1	84	1	84	n	0.00	0	99	0	99	n	0.00	0	65	0	65	n	0.01	1	130	1	130	n	0.04	2	49	2	49	y	0.01	1	73	1	73	n	0.00	0	115	0	115	n	0.00	0	93	0	93	n	0.00	0	104	0	104	n	ENSMUSG00000027165.17	Iftap	chr2	protein_coding	intraflagellar transport associated protein
known_NIR_10129	chr2	101392699;101406496	101406405;101413866	-	101392699	101413866	cassetteExon	ENSMUST00000136601.9	known	0.94	48.5	3	6;91	3	y	0.93	39.5	3	4;75	3	y	1.00	39.0	0	2;76	0	n	0.98	44.0	1	4;84	1	n	1.00	53.0	0	7;99	0	n	1.00	34.0	0	3;65	0	n	0.99	69.0	1	8;130	1	n	0.93	27.5	2	6;49	2	y	0.97	36.5	1	0;73	1	n	1.00	59.5	0	4;115	0	n	1.00	51.5	0	10;93	0	n	1.00	55.5	0	7;104	0	n	ENSMUSG00000027165.17	Iftap	chr2	protein_coding	intraflagellar transport associated protein
known_NIR_10130	chr2	101441020	101458564	-	101441020	101459226	A5SS	ENSMUST00000111231.10	known	0.00	0	46	0	46	n	0.00	0	68	0	68	n	0.00	0	68	0	68	n	0.00	0	101	0	101	n	0.00	0	111	0	111	n	0.02	1	60	1	60	n	0.00	0	104	0	104	n	0.00	0	63	0	63	n	0.00	0	87	0	87	n	0.02	2	115	2	115	y	0.00	0	76	0	76	n	0.00	0	84	0	84	n	ENSMUSG00000027165.17	Iftap	chr2	protein_coding	intraflagellar transport associated protein
known_NIR_10131	chr2	101508965;101511372	101511170;101514824	+	101508965	101514824	cassetteExon	ENSMUST00000143341.2	known	0.88	7.0	1	8;6	1	n	0.75	3.0	1	4;2	1	n	0.60	9.0	6	9;9	6	y	0.89	8.0	1	9;7	1	n	0.82	18.0	4	19;17	4	y	0.70	7.0	3	10;4	3	y	0.68	12.5	6	5;20	6	y	0.83	9.5	2	11;8	2	y	0.73	5.5	2	6;5	2	y	0.76	12.5	4	13;12	4	y	0.79	7.5	2	6;9	2	y	0.47	8.0	9	9;7	9	y	ENSMUSG00000027164.9	Traf6	chr2	protein_coding	TNF receptor-associated factor 6
known_NIR_10132	chr2	102188001	102230358	-	102188001	102211209	A5SS&ES	ENSMUST00000144110.2	known	0.00	0	35	0	35	n	0.06	2	30	2	30	y	0.00	0	70	0	70	n	0.00	0	36	0	36	n	0.00	0	62	0	62	n	0.03	1	30	1	30	n	0.03	2	70	2	70	y	0.00	0	50	0	50	n	0.00	0	38	0	38	n	0.01	1	68	1	68	n	0.00	0	37	0	37	n	0.00	0	69	0	69	n	ENSMUSG00000027189.17	Trim44	chr2	protein_coding	tripartite motif-containing 44
known_NIR_10133	chr2	102188001	102230358	-	102188001;102211286	102211209;102230358	ES	ENSMUST00000102573.8	known	0.00	0	32.5	0	35;30	n	0.05	2	36.5	2	30;43	y	0.00	0	75.0	0	70;80	n	0.00	0	38.5	0	36;41	n	0.00	0	65.0	0	62;68	n	0.03	1	32.5	1	30;35	n	0.03	2	61.0	2	70;52	y	0.00	0	44.0	0	50;38	n	0.00	0	39.0	0	38;40	n	0.02	1	60.5	1	68;53	n	0.00	0	35.0	0	37;33	n	0.00	0	59.0	0	69;49	n	ENSMUSG00000027189.17	Trim44	chr2	protein_coding	tripartite motif-containing 44
known_NIR_10134	chr2	102536828	102566289	+	102516614	102566289	A5SS	ENSMUST00000136221.8	known	0.96	78	3	78	3	y	1.00	35	0	35	0	n	0.90	18	2	18	2	y	0.91	84	8	84	8	y	0.94	67	4	67	4	y	1.00	27	0	27	0	n	0.93	54	4	54	4	y	1.00	22	0	22	0	n	0.92	47	4	47	4	y	0.97	59	2	59	2	y	0.98	45	1	45	1	n	0.96	87	4	87	4	y	ENSMUSG00000005089.16	Slc1a2	chr2	protein_coding	solute carrier family 1 (glial high affinity glutamate transporter), member 2
known_NIR_10135	chr2	102608000;102611132	102611062;102611808	+	102608000	102611808	cassetteExon	ENSMUST00000080210.10	known	0.01	1.0	100	0;2	100	n	0.00	0.0	141	0;0	141	n	0.03	1.0	39	1;1	39	n	0.01	1.5	161	0;3	161	n	0.02	2.0	105	2;2	105	y	0.00	0.0	35	0;0	35	n	0.01	1.0	175	2;0	175	n	0.00	0.0	58	0;0	58	n	0.01	1.0	139	1;1	139	n	0.01	1.0	192	1;1	192	n	0.01	1.0	165	2;0	165	n	0.00	0.0	153	0;0	153	n	ENSMUSG00000005089.16	Slc1a2	chr2	protein_coding	solute carrier family 1 (glial high affinity glutamate transporter), member 2
known_NIR_10136	chr2	102877166	102903635	-	102877166;102888922	102888842;102903635	ES	ENSMUST00000011058.9	known	0.00	0	38.5	0	38;39	n	0.05	2	38.0	2	36;40	y	0.00	0	101.0	0	110;92	n	0.02	1	59.0	1	62;56	n	0.04	4	89.0	4	102;76	y	0.06	3	44.5	3	53;36	y	0.02	2	80.0	2	88;72	y	0.00	0	53.0	0	53;53	n	0.02	1	61.5	1	63;60	n	0.00	0	87.5	0	99;76	n	0.00	0	56.5	0	56;57	n	0.00	0	93.0	0	104;82	n	ENSMUSG00000010914.11	Pdhx	chr2	protein_coding	pyruvate dehydrogenase complex, component X
known_NIR_10137	chr2	102919081	102919748	+	102919023	102919748	A5SS	ENSMUST00000011055.7	known	0.01	1	79	1	79	n	0.01	1	69	1	69	n	0.00	0	113	0	113	n	0.02	2	80	2	80	y	0.00	0	80	0	80	n	0.02	2	87	2	87	y	0.00	0	87	0	87	n	0.02	1	64	1	64	n	0.01	1	69	1	69	n	0.00	0	83	0	83	n	0.01	1	77	1	77	n	0.01	1	69	1	69	n	ENSMUSG00000010911.13	Apip	chr2	protein_coding	APAF1 interacting protein
known_NIR_10138	chr2	102922261	102922787	+	102922261	102922810	A3SS	ENSMUST00000011055.7	known	0.01	1	72	1	72	n	0.01	1	78	1	78	n	0.01	1	107	1	107	n	0.00	0	72	0	72	n	0.00	0	91	0	91	n	0.00	0	84	0	84	n	0.00	0	111	0	111	n	0.00	0	68	0	68	n	0.04	2	51	2	51	y	0.00	0	94	0	94	n	0.00	0	91	0	91	n	0.00	0	72	0	72	n	ENSMUSG00000010911.13	Apip	chr2	protein_coding	APAF1 interacting protein
known_NIR_10139	chr2	103564870	103565263	-	103564870	103565211	A5SS	ENSMUST00000028608.13	known	0.07	1	13	1	13	n	0.00	0	5	0	5	n	0.00	0	17	0	17	n	0.00	0	17	0	17	n	0.09	2	21	2	21	y	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.08	1	11	1	11	n	0.00	0	10	0	10	n	0.00	0	18	0	18	n	0.00	0	15	0	15	n	0.00	0	19	0	19	n	ENSMUSG00000027185.16	Nat10	chr2	protein_coding	N-acetyltransferase 10
known_NIR_10140	chr2	103588138	103591140	-	103588138	103591394	A5SS	ENSMUST00000028608.13	known	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	17	0	17	n	0.00	0	15	0	15	n	0.21	4	15	4	15	y	0.29	2	5	2	5	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	18	0	18	n	ENSMUSG00000027185.16	Nat10	chr2	protein_coding	N-acetyltransferase 10
known_NIR_10141	chr2	103599248	103602042	-	103599248;103599974	103599780;103602042	ES	ENSMUST00000028607.13	known	0.01	4	303.5	4	341;266	y	0.00	0	226.5	0	247;206	n	0.00	1	324.0	1	335;313	n	0.00	0	304.5	0	330;279	n	0.00	0	415.0	0	392;438	n	0.00	0	205.0	0	201;209	n	0.01	2	323.0	2	350;296	y	0.00	0	214.0	0	230;198	n	0.00	0	264.0	0	279;249	n	0.00	0	331.5	0	349;314	n	0.00	1	244.0	1	247;241	n	0.00	1	308.0	1	314;302	n	ENSMUSG00000027184.15	Caprin1	chr2	protein_coding	cell cycle associated protein 1
known_NIR_10142	chr2	103604089	103605762	-	103604140	103605762	A3SS	ENSMUST00000028607.13	known	0.00	0	148	0	148	n	0.00	0	119	0	119	n	0.00	0	207	0	207	n	0.00	0	207	0	207	n	0.01	2	288	2	288	y	0.00	0	112	0	112	n	0.01	2	179	2	179	y	0.00	0	160	0	160	n	0.00	0	135	0	135	n	0.00	0	233	0	233	n	0.01	1	164	1	164	n	0.00	0	196	0	196	n	ENSMUSG00000027184.15	Caprin1	chr2	protein_coding	cell cycle associated protein 1
known_NIR_10143	chr2	103613550;103618548	103618483;103627076	-	103613550	103627076	cassetteExon	ENSMUST00000028607.13	known	0.06	8.0	118	7;9	118	y	0.02	1.5	72	3;0	72	n	0.07	9.5	121	11;8	121	y	0.03	4.5	166	4;5	166	y	0.05	8.5	170	7;10	170	y	0.06	5.0	81	5;5	81	y	0.06	6.0	99	7;5	99	y	0.04	3.5	89	7;0	89	n	0.05	4.5	91	5;4	91	y	0.04	4.5	104	4;5	104	y	0.06	4.0	65	3;5	65	y	0.02	2.5	125	2;3	125	y	ENSMUSG00000027184.15	Caprin1	chr2	protein_coding	cell cycle associated protein 1
known_NIR_10144	chr2	103881601	103885181	+	103881601;103883825	103883710;103885181	ES	ENSMUST00000028603.10	known	0.00	0	199.0	0	206;192	n	0.00	0	138.0	0	131;145	n	0.00	0	110.0	0	109;111	n	0.00	0	226.5	0	228;225	n	0.00	0	246.5	0	239;254	n	0.00	0	91.0	0	69;113	n	0.00	0	206.5	0	184;229	n	0.00	0	109.0	0	114;104	n	0.00	0	174.5	0	152;197	n	0.00	0	294.0	0	287;301	n	0.02	3	193.0	3	181;205	y	0.00	0	282.5	0	251;314	n	ENSMUSG00000027180.13	Fbxo3	chr2	protein_coding	F-box protein 3
known_NIR_10145	chr2	103885371	103886346	+	103885371	103890227	A3SS	ENSMUST00000028603.10	known	0.24	43	139	43	139	y	0.23	30	98	30	98	y	0.28	34	87	34	87	y	0.21	56	213	56	213	y	0.24	54	170	54	170	y	0.28	18	47	18	47	y	0.27	63	172	63	172	y	0.18	15	70	15	70	y	0.27	50	132	50	132	y	0.30	96	224	96	224	y	0.28	55	141	55	141	y	0.30	80	185	80	185	y	ENSMUSG00000027180.13	Fbxo3	chr2	protein_coding	F-box protein 3
known_NIR_10146	chr2	103911443	103914767	+	103911443	103920474	A3SS	ENSMUST00000111131.9	known	0.00	0	7	0	7	n	0.40	6	9	6	9	y	0.50	1	1	1	1	n	0.08	1	11	1	11	n	0.72	13	5	13	5	y	0.67	2	1	2	1	n	0.39	12	19	12	19	y	0.29	2	5	2	5	n	0.43	3	4	3	4	n	0.50	8	8	8	8	y	0.52	11	10	11	10	y	0.40	6	9	6	9	y	ENSMUSG00000068686.13	Cd59b	chr2	protein_coding	CD59b antigen
known_NIR_10147	chr2	103911443	103914767	+	103911443	103921349	A3SS	ENSMUST00000111132.8	known	0.00	0	17	0	17	n	0.40	6	9	6	9	y	1.00	1	0	1	0	n	0.08	1	12	1	12	n	0.59	13	9	13	9	y	0.40	2	3	2	3	n	0.55	12	10	12	10	y	0.67	2	1	2	1	n	0.43	3	4	3	4	n	0.24	8	25	8	25	y	0.48	11	12	11	12	y	0.38	6	10	6	10	y	ENSMUSG00000068686.13	Cd59b	chr2	protein_coding	CD59b antigen
known_NIR_10148	chr2	103911443	103921349	+	103911443;103920619	103920474;103921349	ES	ENSMUST00000111131.9	known	0.60	17	11.5	17	7;16	y	0.44	9	11.5	9	9;14	y	0.00	0	0.5	0	1;0	n	0.53	12	10.5	12	11;10	y	0.50	9	9.0	9	5;13	y	0.86	3	0.5	3	1;0	n	0.36	10	18.0	10	19;17	y	0.22	1	3.5	1	5;2	n	0.44	4	5.0	4	4;6	y	0.74	25	9.0	25	8;10	y	0.51	12	11.5	12	10;13	y	0.54	10	8.5	10	9;8	y	ENSMUSG00000068686.13	Cd59b	chr2	protein_coding	CD59b antigen
known_NIR_10149	chr2	103926272	103934516	+	103926272;103928189	103928070;103934516	ES	ENSMUST00000168176.8	known	0.86	150	23.5	150	20;27	y	0.91	103	10.5	103	11;10	y	0.91	65	6.5	65	8;5	y	0.92	169	15.5	169	21;10	y	0.89	215	26.5	215	25;28	y	0.86	82	13.0	82	16;10	y	0.90	230	25.5	230	24;27	y	0.89	98	12.5	98	7;18	y	0.89	173	22.0	173	18;26	y	0.88	220	30.0	220	27;33	y	0.90	162	19.0	162	21;17	y	0.91	169	16.5	169	9;24	y	ENSMUSG00000032679.13	Cd59a	chr2	protein_coding	CD59a antigen
known_NIR_10150	chr2	104264190;104264534	104264472;104264683	-	104264190	104264683	cassetteExon	ENSMUST00000028600.14	known	0.02	1.0	43	2;0	43	n	0.11	2.0	17	2;2	17	y	0.02	3.0	121	2;4	121	y	0.03	2.0	64	1;3	64	n	0.04	4.0	97	1;7	97	n	0.01	0.5	45	0;1	45	n	0.02	1.0	62	2;0	62	n	0.01	0.5	62	1;0	62	n	0.10	4.5	42	4;5	42	y	0.03	2.0	68	0;4	68	n	0.04	2.0	49	3;1	49	n	0.05	3.5	66	5;2	66	y	ENSMUSG00000027177.15	Hipk3	chr2	protein_coding	homeodomain interacting protein kinase 3
known_NIR_10151	chr2	104267414	104268196	-	104267465	104268196	A3SS	ENSMUST00000028600.14	known	0.00	0	35	0	35	n	0.00	0	25	0	25	n	0.02	2	104	2	104	y	0.00	0	44	0	44	n	0.05	4	81	4	81	y	0.05	2	37	2	37	y	0.00	0	64	0	64	n	0.00	0	49	0	49	n	0.00	0	41	0	41	n	0.00	0	79	0	79	n	0.00	0	21	0	21	n	0.00	0	75	0	75	n	ENSMUSG00000027177.15	Hipk3	chr2	protein_coding	homeodomain interacting protein kinase 3
known_NIR_10152	chr2	104302192	104323566	-	104302192	104324293	A5SS	ENSMUST00000028600.14	known	0.21	4	15	4	15	y	0.17	2	10	2	10	y	0.31	16	36	16	36	y	0.09	3	29	3	29	y	0.30	21	48	21	48	y	0.17	4	19	4	19	y	0.34	14	27	14	27	y	0.12	3	22	3	22	y	0.35	7	13	7	13	y	0.29	13	32	13	32	y	0.00	0	17	0	17	n	0.45	13	16	13	16	y	ENSMUSG00000027177.15	Hipk3	chr2	protein_coding	homeodomain interacting protein kinase 3
known_NIR_10153	chr2	104491059	104493676	+	104491059	104493639	A3SS	ENSMUST00000028599.8	known	0.03	1	39	1	39	n	0.00	0	25	0	25	n	0.08	3	33	3	33	y	0.00	0	25	0	25	n	0.00	0	16	0	16	n	0.00	0	29	0	29	n	0.00	0	38	0	38	n	0.00	0	19	0	19	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.00	0	20	0	20	n	ENSMUSG00000027176.9	Cstf3	chr2	protein_coding	cleavage stimulation factor, 3' pre-RNA, subunit 3
known_NIR_10154	chr2	104535546	104536701	-	104530319	104536701	A3SS	ENSMUST00000111118.8	known	0.91	20	2	20	2	y	0.83	19	4	19	4	y	0.85	39	7	39	7	y	0.81	26	6	26	6	y	0.78	36	10	36	10	y	0.87	27	4	27	4	y	0.85	41	7	41	7	y	0.71	20	8	20	8	y	0.69	11	5	11	5	y	0.81	17	4	17	4	y	0.84	21	4	21	4	y	0.93	14	1	14	1	n	ENSMUSG00000027175.11	Tcp11l1	chr2	protein_coding	t-complex 11 like 1
known_NIR_10155	chr2	104536882	104542321	-	104536887	104542321	A3SS	ENSMUST00000111118.8	known	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.16	6	32	6	32	y	0.07	1	14	1	14	n	0.00	0	15	0	15	n	0.00	0	15	0	15	n	0.00	0	21	0	21	n	0.00	0	16	0	16	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.00	0	7	0	7	n	ENSMUSG00000027175.11	Tcp11l1	chr2	protein_coding	t-complex 11 like 1
known_NIR_10156	chr2	104830647	104835270	-	104830647;104831759	104831616;104835270	ES	ENSMUST00000131266.2	known	0.01	3	374.0	3	351;397	y	0.01	4	365.5	4	397;334	y	0.01	4	448.5	4	435;462	y	0.00	1	337.5	1	349;326	n	0.01	5	394.0	5	388;400	y	0.01	3	210.0	3	213;207	y	0.01	5	458.0	5	432;484	y	0.01	2	200.5	2	193;208	y	0.01	3	295.5	3	294;297	y	0.02	8	439.5	8	422;457	y	0.01	3	376.5	3	377;376	y	0.00	2	398.5	2	371;426	y	ENSMUSG00000027170.13	Eif3m	chr2	protein_coding	eukaryotic translation initiation factor 3, subunit M
known_NIR_10157	chr2	105054725	105128071	+	105054725;105115030	105114946;105128071	ES	ENSMUST00000068813.3	known	0.19	8	34.0	8	29;39	y	0.11	4	32.5	4	26;39	y	0.06	3	48.0	3	37;59	y	0.25	13	38.0	13	27;49	y	0.14	11	68.0	11	58;78	y	0.11	6	48.5	6	31;66	y	0.21	13	49.0	13	37;61	y	0.18	8	36.5	8	28;45	y	0.23	10	33.5	10	28;39	y	0.15	10	56.5	10	46;67	y	0.21	13	50.0	13	40;60	y	0.20	7	28.0	7	21;35	y	ENSMUSG00000055312.3	Them7	chr2	protein_coding	thioesterase superfamily member 7
known_NIR_10158	chr2	105727282;105733725	105733646;105734614	-	105727282	105734614	cassetteExon	ENSMUST00000122965.8	known	0.00	0.0	7	0;0	7	n	0.00	0.0	10	0;0	10	n	0.18	2.0	9	2;2	9	y	0.00	0.0	17	0;0	17	n	0.00	0.0	7	0;0	7	n	0.00	0.0	10	0;0	10	n	0.09	1.0	10	1;1	10	n	0.00	0.0	6	0;0	6	n	0.00	0.0	29	0;0	29	n	0.00	0.0	16	0;0	16	n	0.00	0.0	9	0;0	9	n	0.00	0.0	11	0;0	11	n	ENSMUSG00000027167.12	Elp4	chr2	protein_coding	elongator acetyltransferase complex subunit 4
known_NIR_10159	chr2	105797439	105832274	-	105797439;105800861	105800793;105832274	ES	ENSMUST00000124163.8	known	0.00	0	16.5	0	32;1	n	0.00	0	26.0	0	49;3	n	0.00	0	32.5	0	57;8	n	0.00	0	23.5	0	42;5	n	0.00	0	21.5	0	38;5	n	0.07	1	12.5	1	23;2	n	0.12	3	22.0	3	40;4	y	0.00	0	13.0	0	21;5	n	0.00	0	11.5	0	23;0	n	0.03	1	31.0	1	57;5	n	0.03	1	28.0	1	47;9	n	0.13	3	20.5	3	38;3	y	ENSMUSG00000027166.15	Dnajc24	chr2	protein_coding	DnaJ heat shock protein family (Hsp40) member C24
known_NIR_10160	chr2	105797439;105800861	105800793;105811327	-	105797439	105811327	cassetteExon	ENSMUST00000155811.2	known	0.95	36.0	2	32;40	2	y	1.00	41.0	0	49;33	0	n	0.91	50.0	5	57;43	5	y	0.92	34.0	3	42;26	3	y	0.96	44.0	2	38;50	2	y	0.96	27.5	1	23;32	1	n	0.98	40.5	1	40;41	1	n	1.00	19.0	0	21;17	0	n	0.93	27.0	2	23;31	2	y	0.96	51.5	2	57;46	2	y	0.94	43.5	3	47;40	3	y	1.00	39.5	0	38;41	0	n	ENSMUSG00000027166.15	Dnajc24	chr2	protein_coding	DnaJ heat shock protein family (Hsp40) member C24
known_NIR_10161	chr2	105797439;105800861	105800793;105832274	-	105797439;105811465	105811327;105832274	MXE	ENSMUST00000155811.2	known	0.46	16.5	19.5	32;1	2;37	n	0.68	26.0	12.0	49;3	0;24	n	0.61	32.5	21.0	57;8	5;37	y	0.67	23.5	11.5	42;5	3;20	y	0.49	21.5	22.0	38;5	2;42	y	0.52	12.5	11.5	23;2	1;22	n	0.56	22.0	17.5	40;4	1;34	n	0.51	13.0	12.5	21;5	0;25	n	0.43	11.5	15.5	23;0	2;29	n	0.60	31.0	21.0	57;5	2;40	y	0.64	28.0	16.0	47;9	3;29	y	0.48	20.5	22.0	38;3	0;44	n	ENSMUSG00000027166.15	Dnajc24	chr2	protein_coding	DnaJ heat shock protein family (Hsp40) member C24
known_NIR_10162	chr2	105800861	105832274	-	105800861;105811465	105811327;105832274	ES	ENSMUST00000102555.11	known	0.03	1	38.5	1	40;37	n	0.10	3	28.5	3	33;24	y	0.17	8	40.0	8	43;37	y	0.18	5	23.0	5	26;20	y	0.10	5	46.0	5	50;42	y	0.07	2	27.0	2	32;22	y	0.10	4	37.5	4	41;34	y	0.19	5	21.0	5	17;25	y	0.00	0	30.0	0	31;29	n	0.10	5	43.0	5	46;40	y	0.21	9	34.5	9	40;29	y	0.07	3	42.5	3	41;44	y	ENSMUSG00000027166.15	Dnajc24	chr2	protein_coding	DnaJ heat shock protein family (Hsp40) member C24
known_NIR_10163	chr2	109105020	109110954	-	109105020	109108538	5pMXE	ENSMUST00000081631.10	known	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.25	2	6	2	6	n	0.29	2	5	2	5	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.20	2	8	2	8	y	-	-	-	-	-	-	0.20	1	4	1	4	n	ENSMUSG00000057234.10	Mettl15	chr2	protein_coding	methyltransferase like 15
known_NIR_10164	chr2	112097437	112163728	+	112097437;112146630	112146586;112163728	ES	ENSMUST00000110991.9	known	0.67	2	1.0	2	0;2	n	0.00	0	1.0	0	2;0	n	0.00	0	1.0	0	0;2	n	0.50	2	2.0	2	1;3	n	0.43	3	4.0	3	4;4	y	0.00	0	5.5	0	6;5	n	0.40	4	6.0	4	4;8	y	0.50	3	3.0	3	3;3	n	0.25	1	3.0	1	5;1	n	0.00	0	1.0	0	0;2	n	0.80	2	0.5	2	0;1	n	0.53	4	3.5	4	3;4	y	ENSMUSG00000027130.16	Slc12a6	chr2	protein_coding	solute carrier family 12, member 6
known_NIR_10165	chr2	112194650	112197678	-	112194650	112197747	A5SS	ENSMUST00000028551.4	known	0.00	0	171	0	171	n	0.01	2	206	2	206	y	0.00	0	256	0	256	n	0.00	0	223	0	223	n	0.00	0	255	0	255	n	0.00	0	135	0	135	n	0.00	0	273	0	273	n	0.00	0	145	0	145	n	0.00	0	186	0	186	n	0.00	0	270	0	270	n	0.00	0	256	0	256	n	0.00	0	238	0	238	n	ENSMUSG00000027131.4	Emc4	chr2	protein_coding	ER membrane protein complex subunit 4
known_NIR_10166	chr2	113935842	113936281	-	113934598	113936281	A3SS	ENSMUST00000043160.13	known	0.02	1	46	1	46	n	0.04	2	52	2	52	y	0.08	5	61	5	61	y	0.04	2	52	2	52	y	0.06	4	63	4	63	y	0.00	0	21	0	21	n	0.07	4	52	4	52	y	0.05	1	18	1	18	n	0.03	1	38	1	38	n	0.00	0	44	0	44	n	0.03	2	58	2	58	y	0.06	3	51	3	51	y	ENSMUSG00000040383.17	Aqr	chr2	protein_coding	aquarius
known_NIR_10167	chr2	114350280	114366006	-	114353619	114366006	3pMXE	ENSMUST00000150447.8	known	0.13	2	13	2	13	y	0.00	0	9	0	9	n	0.00	0	16	0	16	n	0.20	1	4	1	4	n	0.10	2	19	2	19	y	0.17	1	5	1	5	n	0.00	0	13	0	13	n	0.33	1	2	1	2	n	0.09	1	10	1	10	n	0.00	0	6	0	6	n	0.12	1	7	1	7	n	0.14	2	12	2	12	y	ENSMUSG00000057147.14	Dph6	chr2	protein_coding	diphthamine biosynthesis 6
known_NIR_10168	chr2	114350280;114353619	114353525;114366006	-	114350280	114366006	cassetteExon	ENSMUST00000028640.14	known	0.89	15.5	2	18;13	2	y	1.00	9.0	0	9;9	0	n	1.00	12.5	0	9;16	0	n	0.86	6.0	1	8;4	1	n	0.89	15.5	2	12;19	2	y	0.80	4.0	1	3;5	1	n	1.00	16.0	0	19;13	0	n	0.71	2.5	1	3;2	1	n	0.88	7.0	1	4;10	1	n	1.00	4.5	0	3;6	0	n	0.86	6.0	1	5;7	1	n	0.83	9.5	2	7;12	2	y	ENSMUSG00000057147.14	Dph6	chr2	protein_coding	diphthamine biosynthesis 6
known_NIR_10169	chr2	11479354	11486682	-	11479354;11485182	11485009;11486682	ES	ENSMUST00000192949.6	known	0.00	0	31.5	0	40;23	n	0.05	2	39.5	2	60;19	y	0.02	2	80.5	2	103;58	y	0.06	1	16.5	1	29;4	n	0.10	2	18.0	2	27;9	y	0.00	0	24.5	0	29;20	n	0.05	1	20.0	1	31;9	n	0.00	0	9.0	0	12;6	n	0.00	0	4.0	0	7;1	n	0.00	0	15.0	0	20;10	n	0.00	0	12.0	0	14;10	n	0.14	1	6.0	1	4;8	n	ENSMUSG00000026773.20	Pfkfb3	chr2	protein_coding	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
known_NIR_10170	chr2	11479354	11486682	-	11485182	11486682	3pMXE	ENSMUST00000192844.6	known	0.00	0	23	0	23	n	0.10	2	19	2	19	y	0.03	2	58	2	58	y	0.20	1	4	1	4	n	0.18	2	9	2	9	y	0.00	0	20	0	20	n	0.10	1	9	1	9	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.11	1	8	1	8	n	ENSMUSG00000026773.20	Pfkfb3	chr2	protein_coding	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
known_NIR_10171	chr2	11485182	11486682	-	11486144	11486682	3pMXE	ENSMUST00000191726.2	known	0.70	23	10	23	10	y	0.51	19	18	19	18	y	0.69	58	26	58	26	y	0.44	4	5	4	5	n	0.45	9	11	9	11	y	0.62	20	12	20	12	y	0.45	9	11	9	11	y	0.67	6	3	6	3	n	0.50	1	1	1	1	n	0.83	10	2	10	2	y	0.91	10	1	10	1	n	0.73	8	3	8	3	y	ENSMUSG00000026773.20	Pfkfb3	chr2	protein_coding	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
known_NIR_10172	chr2	11485182;11486144	11486058;11486682	-	11485182	11486682	cassetteExon	ENSMUST00000192949.6	known	0.32	11.0	23	12;10	23	y	0.42	14.0	19	10;18	19	y	0.28	23.0	58	20;26	58	y	0.47	3.5	4	2;5	4	y	0.47	8.0	9	5;11	9	y	0.32	9.5	20	7;12	20	y	0.59	13.0	9	15;11	9	y	0.25	2.0	6	1;3	6	n	0.60	1.5	1	2;1	1	n	0.23	3.0	10	4;2	10	y	0.17	2.0	10	3;1	10	n	0.24	2.5	8	2;3	8	y	ENSMUSG00000026773.20	Pfkfb3	chr2	protein_coding	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
known_NIR_10173	chr2	11486144	11486682	-	11479354	11486682	A3SS	ENSMUST00000183869.8	known	1.00	10	0	10	0	n	0.90	18	2	18	2	y	0.93	26	2	26	2	y	0.83	5	1	5	1	n	0.85	11	2	11	2	y	1.00	12	0	12	0	n	0.92	11	1	11	1	n	1.00	3	0	3	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	n	1.00	1	0	1	0	n	0.75	3	1	3	1	n	ENSMUSG00000026773.20	Pfkfb3	chr2	protein_coding	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
known_NIR_10174	chr2	11498839	11506436	-	11498839	11505640	5pMXE	ENSMUST00000144921.3	known	1.00	17	0	17	0	n	1.00	11	0	11	0	n	0.99	78	1	78	1	n	1.00	11	0	11	0	n	0.88	7	1	7	1	n	1.00	18	0	18	0	n	0.87	13	2	13	2	y	1.00	7	0	7	0	n	1.00	6	0	6	0	n	0.83	5	1	5	1	n	1.00	6	0	6	0	n	0.86	6	1	6	1	n	ENSMUSG00000026773.20	Pfkfb3	chr2	protein_coding	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
known_NIR_10175	chr2	11498839	11506436	-	11498839	11558638	A5SS	ENSMUST00000192949.6	known	1.00	17	0	17	0	n	1.00	11	0	11	0	n	0.97	78	2	78	2	y	1.00	11	0	11	0	n	1.00	7	0	7	0	n	1.00	18	0	18	0	n	0.93	13	1	13	1	n	1.00	7	0	7	0	n	1.00	6	0	6	0	n	0.83	5	1	5	1	n	1.00	6	0	6	0	n	1.00	6	0	6	0	n	ENSMUSG00000026773.20	Pfkfb3	chr2	protein_coding	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
known_NIR_10176	chr2	11498839;11505788	11505640;11506436	-	11498839	11506436	cassetteExon	ENSMUST00000179584.8	known	0.11	2.0	17	0;4	17	n	0.00	0.0	11	0;0	11	n	0.02	1.5	78	1;2	78	n	0.00	0.0	11	0;0	11	n	0.07	0.5	7	1;0	7	n	0.00	0.0	18	0;0	18	n	0.13	2.0	13	2;2	13	y	0.00	0.0	7	0;0	7	n	0.00	0.0	6	0;0	6	n	0.17	1.0	5	1;1	5	n	0.00	0.0	6	0;0	6	n	0.14	1.0	6	1;1	6	n	ENSMUSG00000026773.20	Pfkfb3	chr2	protein_coding	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
known_NIR_10177	chr2	115516931	115517545	+	115516931	115517527	A3SS	ENSMUST00000166472.8	known	0.80	8	2	8	2	y	1.00	10	0	10	0	n	1.00	18	0	18	0	n	1.00	9	0	9	0	n	1.00	14	0	14	0	n	1.00	9	0	9	0	n	1.00	9	0	9	0	n	1.00	12	0	12	0	n	1.00	8	0	8	0	n	1.00	12	0	12	0	n	1.00	10	0	10	0	n	1.00	8	0	8	0	n	ENSMUSG00000040282.14	Cdin1	chr2	protein_coding	CDAN1 interacting nuclease 1
known_NIR_10178	chr2	115694994;115697385	115697291;115697750	-	115694994	115697750	cassetteExon	ENSMUST00000028639.13	known	1.00	2.5	0	5;0	0	n	0.33	1.0	2	1;1	2	n	0.33	2.0	4	1;3	4	n	1.00	4.5	0	4;5	0	n	0.62	5.0	3	5;5	3	y	0.00	0.0	5	0;0	5	n	0.33	0.5	1	0;1	1	n	1.00	0.5	0	0;1	0	n	0.50	1.0	1	0;2	1	n	0.33	1.0	2	1;1	2	n	1.00	1.5	0	2;1	0	n	0.11	0.5	4	0;1	4	n	ENSMUSG00000027210.21	Meis2	chr2	protein_coding	Meis homeobox 2
known_NIR_10179	chr2	115697839	115699226	-	115697860	115699226	A3SS	ENSMUST00000028639.13	known	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.67	8	4	8	4	y	-	-	-	-	-	-	0.43	3	4	3	4	n	1.00	3	0	3	0	n	0.80	4	1	4	1	n	1.00	2	0	2	0	n	1.00	2	0	2	0	n	0.00	0	1	0	1	n	1.00	2	0	2	0	n	-	-	-	-	-	-	ENSMUSG00000027210.21	Meis2	chr2	protein_coding	Meis homeobox 2
known_NIR_10180	chr2	11710755	11723075	+	11710389	11723075	A5SS	ENSMUST00000138349.8	known	0.11	6	50	6	50	y	0.08	5	55	5	55	y	0.21	8	31	8	31	y	0.12	10	70	10	70	y	0.08	7	85	7	85	y	0.12	4	28	4	28	y	0.12	9	64	9	64	y	0.17	8	39	8	39	y	0.11	6	49	6	49	y	0.15	14	77	14	77	y	0.16	10	51	10	51	y	0.16	13	67	13	67	y	ENSMUSG00000023206.17	Il15ra	chr2	protein_coding	interleukin 15 receptor, alpha chain
known_NIR_10181	chr2	11723269	11724824	+	11723153	11724824	A5SS	ENSMUST00000138349.8	known	0.95	36	2	36	2	y	0.90	44	5	44	5	y	0.90	28	3	28	3	y	0.93	55	4	55	4	y	0.93	41	3	41	3	y	1.00	30	0	30	0	n	0.95	72	4	72	4	y	1.00	36	0	36	0	n	0.91	41	4	41	4	y	0.85	46	8	46	8	y	0.92	44	4	44	4	y	0.98	48	1	48	1	n	ENSMUSG00000023206.17	Il15ra	chr2	protein_coding	interleukin 15 receptor, alpha chain
known_NIR_10182	chr2	11723269	11724824	+	11723269	11735382	A3SS	ENSMUST00000114832.3	known	1.00	36	0	36	0	n	1.00	44	0	44	0	n	1.00	28	0	28	0	n	0.98	55	1	55	1	n	1.00	41	0	41	0	n	1.00	30	0	30	0	n	1.00	72	0	72	0	n	0.97	36	1	36	1	n	0.98	41	1	41	1	n	0.90	46	5	46	5	y	1.00	44	0	44	0	n	1.00	48	0	48	0	n	ENSMUSG00000023206.17	Il15ra	chr2	protein_coding	interleukin 15 receptor, alpha chain
known_NIR_10183	chr2	11723269	11728224	+	11723269	11724824	A3SS&ES	ENSMUST00000114831.9	known	0.08	3	36	3	36	y	0.14	7	44	7	44	y	0.18	6	28	6	28	y	0.17	11	55	11	55	y	0.20	10	41	10	41	y	0.06	2	30	2	30	y	0.12	10	72	10	72	y	0.12	5	36	5	36	y	0.16	8	41	8	41	y	0.19	11	46	11	46	y	0.19	10	44	10	44	y	0.16	9	48	9	48	y	ENSMUSG00000023206.17	Il15ra	chr2	protein_coding	interleukin 15 receptor, alpha chain
known_NIR_10184	chr2	11723269	11728224	+	11723269	11735382	A3SS	ENSMUST00000114832.3	known	1.00	3	0	3	0	n	1.00	7	0	7	0	n	1.00	6	0	6	0	n	0.92	11	1	11	1	n	1.00	10	0	10	0	n	1.00	2	0	2	0	n	1.00	10	0	10	0	n	0.83	5	1	5	1	n	0.89	8	1	8	1	n	0.69	11	5	11	5	y	1.00	10	0	10	0	n	1.00	9	0	9	0	n	ENSMUSG00000023206.17	Il15ra	chr2	protein_coding	interleukin 15 receptor, alpha chain
known_NIR_10185	chr2	11723269	11728224	+	11724916	11728224	A5SS&ES	ENSMUST00000138349.8	known	0.15	3	17	3	17	y	0.18	7	31	7	31	y	0.26	6	17	6	17	y	0.19	11	46	11	46	y	0.19	10	42	10	42	y	0.14	2	12	2	12	y	0.20	10	39	10	39	y	0.16	5	26	5	26	y	0.22	8	29	8	29	y	0.19	11	46	11	46	y	0.24	10	32	10	32	y	0.18	9	41	9	41	y	ENSMUSG00000023206.17	Il15ra	chr2	protein_coding	interleukin 15 receptor, alpha chain
known_NIR_10186	chr2	11723269	11728907	+	11723269	11724824	3pMXE	ENSMUST00000133975.2	known	0.10	4	36	4	36	y	0.14	7	44	7	44	y	0.10	3	28	3	28	y	0.07	4	55	4	55	y	0.13	6	41	6	41	y	0.03	1	30	1	30	n	0.06	5	72	5	72	y	0.08	3	36	3	36	y	0.09	4	41	4	41	y	0.18	10	46	10	46	y	0.08	4	44	4	44	y	0.09	5	48	5	48	y	ENSMUSG00000023206.17	Il15ra	chr2	protein_coding	interleukin 15 receptor, alpha chain
known_NIR_10187	chr2	11723269	11728907	+	11723269;11724916	11724824;11728907	ES	ENSMUST00000191662.6	known	0.17	4	20.0	4	36;4	y	0.22	7	25.0	7	44;6	y	0.15	3	16.5	3	28;5	y	0.12	4	30.0	4	55;5	y	0.21	6	22.0	6	41;3	y	0.05	1	18.0	1	30;6	n	0.11	5	38.5	5	72;5	y	0.14	3	19.0	3	36;2	y	0.15	4	23.0	4	41;5	y	0.27	10	27.0	10	46;8	y	0.14	4	24.5	4	44;5	y	0.15	5	28.0	5	48;8	y	ENSMUSG00000023206.17	Il15ra	chr2	protein_coding	interleukin 15 receptor, alpha chain
known_NIR_10188	chr2	11723269	11728907	+	11723269;11728421	11728224;11728907	ES	ENSMUST00000135341.8	known	0.14	4	24.0	4	3;45	y	0.15	7	38.5	7	7;70	y	0.10	3	27.0	3	6;48	y	0.08	4	46.0	4	11;81	y	0.11	6	47.0	6	10;84	y	0.05	1	19.0	1	2;36	n	0.09	5	52.0	5	10;94	y	0.12	3	23.0	3	5;41	y	0.13	4	27.5	4	8;47	y	0.16	10	54.5	10	11;98	y	0.09	4	40.5	4	10;71	y	0.10	5	47.5	5	9;86	y	ENSMUSG00000023206.17	Il15ra	chr2	protein_coding	interleukin 15 receptor, alpha chain
known_NIR_10189	chr2	11723269	11728907	+	11728421	11728907	A5SS&ES	ENSMUST00000138349.8	known	0.08	4	45	4	45	y	0.09	7	70	7	70	y	0.06	3	48	3	48	y	0.05	4	81	4	81	y	0.07	6	84	6	84	y	0.03	1	36	1	36	n	0.05	5	94	5	94	y	0.07	3	41	3	41	y	0.08	4	47	4	47	y	0.09	10	98	10	98	y	0.05	4	71	4	71	y	0.05	5	86	5	86	y	ENSMUSG00000023206.17	Il15ra	chr2	protein_coding	interleukin 15 receptor, alpha chain
known_NIR_10190	chr2	11723269	11735382	+	11723269;11728939	11728907;11735382	ES	ENSMUST00000126394.8	known	0.00	0	28.5	0	4;53	n	0.00	0	43.0	0	7;79	n	0.00	0	27.0	0	3;51	n	0.02	1	44.0	1	4;84	n	0.00	0	50.0	0	6;94	n	0.00	0	16.0	0	1;31	n	0.00	0	50.0	0	5;95	n	0.05	1	17.5	1	3;32	n	0.03	1	28.0	1	4;52	n	0.08	5	56.5	5	10;103	y	0.00	0	39.5	0	4;75	n	0.00	0	39.5	0	5;74	n	ENSMUSG00000023206.17	Il15ra	chr2	protein_coding	interleukin 15 receptor, alpha chain
known_NIR_10191	chr2	11723269	11735382	+	11728939	11735382	A5SS&ES	ENSMUST00000138349.8	known	0.00	0	53	0	53	n	0.00	0	79	0	79	n	0.00	0	51	0	51	n	0.01	1	84	1	84	n	0.00	0	94	0	94	n	0.00	0	31	0	31	n	0.00	0	95	0	95	n	0.03	1	32	1	32	n	0.02	1	52	1	52	n	0.05	5	103	5	103	y	0.00	0	75	0	75	n	0.00	0	74	0	74	n	ENSMUSG00000023206.17	Il15ra	chr2	protein_coding	interleukin 15 receptor, alpha chain
known_NIR_10192	chr2	11723269;11724916	11724824;11728224	+	11723269	11728224	cassetteExon	ENSMUST00000135341.8	known	0.90	26.5	3	36;17	3	y	0.84	37.5	7	44;31	7	y	0.79	22.5	6	28;17	6	y	0.82	50.5	11	55;46	11	y	0.81	41.5	10	41;42	10	y	0.91	21.0	2	30;12	2	y	0.85	55.5	10	72;39	10	y	0.86	31.0	5	36;26	5	y	0.81	35.0	8	41;29	8	y	0.81	46.0	11	46;46	11	y	0.79	38.0	10	44;32	10	y	0.83	44.5	9	48;41	9	y	ENSMUSG00000023206.17	Il15ra	chr2	protein_coding	interleukin 15 receptor, alpha chain
known_NIR_10193	chr2	11723269;11724916	11724824;11728907	+	11723269;11728421	11728224;11728907	MXE	ENSMUST00000135341.8	known	0.45	20.0	24.0	36;4	3;45	y	0.39	25.0	38.5	44;6	7;70	y	0.38	16.5	27.0	28;5	6;48	y	0.39	30.0	46.0	55;5	11;81	y	0.32	22.0	47.0	41;3	10;84	y	0.49	18.0	19.0	30;6	2;36	y	0.43	38.5	52.0	72;5	10;94	y	0.45	19.0	23.0	36;2	5;41	y	0.46	23.0	27.5	41;5	8;47	y	0.33	27.0	54.5	46;8	11;98	y	0.38	24.5	40.5	44;5	10;71	y	0.37	28.0	47.5	48;8	9;86	y	ENSMUSG00000023206.17	Il15ra	chr2	protein_coding	interleukin 15 receptor, alpha chain
known_NIR_10194	chr2	11724916	11728323	+	11724916	11728224	A3SS	ENSMUST00000138349.8	known	0.00	0	17	0	17	n	0.00	0	31	0	31	n	0.00	0	17	0	17	n	0.02	1	46	1	46	n	0.09	4	42	4	42	y	0.00	0	12	0	12	n	0.07	3	39	3	39	y	0.00	0	26	0	26	n	0.00	0	29	0	29	n	0.04	2	46	2	46	y	0.00	0	32	0	32	n	0.11	5	41	5	41	y	ENSMUSG00000023206.17	Il15ra	chr2	protein_coding	interleukin 15 receptor, alpha chain
known_NIR_10195	chr2	11724916	11728907	+	11724916;11728421	11728224;11728907	ES	ENSMUST00000138349.8	known	0.11	4	31.0	4	17;45	y	0.11	6	50.5	6	31;70	y	0.13	5	32.5	5	17;48	y	0.07	5	63.5	5	46;81	y	0.05	3	63.0	3	42;84	y	0.20	6	24.0	6	12;36	y	0.07	5	66.5	5	39;94	y	0.06	2	33.5	2	26;41	y	0.12	5	38.0	5	29;47	y	0.10	8	72.0	8	46;98	y	0.09	5	51.5	5	32;71	y	0.11	8	63.5	8	41;86	y	ENSMUSG00000023206.17	Il15ra	chr2	protein_coding	interleukin 15 receptor, alpha chain
known_NIR_10196	chr2	11724916	11728907	+	11728421	11728907	5pMXE	ENSMUST00000139774.3	known	0.08	4	45	4	45	y	0.08	6	70	6	70	y	0.09	5	48	5	48	y	0.06	5	81	5	81	y	0.03	3	84	3	84	y	0.14	6	36	6	36	y	0.05	5	94	5	94	y	0.05	2	41	2	41	y	0.10	5	47	5	47	y	0.08	8	98	8	98	y	0.07	5	71	5	71	y	0.09	8	86	8	86	y	ENSMUSG00000023206.17	Il15ra	chr2	protein_coding	interleukin 15 receptor, alpha chain
known_NIR_10197	chr2	11724916;11728421	11728323;11728907	+	11724916	11728907	cassetteExon	ENSMUST00000191662.6	known	0.85	22.5	4	0;45	4	n	0.85	35.0	6	0;70	6	n	0.83	24.0	5	0;48	5	n	0.89	41.0	5	1;81	5	n	0.94	44.0	3	4;84	3	y	0.75	18.0	6	0;36	6	n	0.91	48.5	5	3;94	5	y	0.91	20.5	2	0;41	2	n	0.82	23.5	5	0;47	5	n	0.86	50.0	8	2;98	8	y	0.88	35.5	5	0;71	5	n	0.85	45.5	8	5;86	8	y	ENSMUSG00000023206.17	Il15ra	chr2	protein_coding	interleukin 15 receptor, alpha chain
known_NIR_10198	chr2	11728939;11732644	11732574;11735382	+	11728939	11735382	cassetteExon	ENSMUST00000138349.8	known	0.10	6.0	53	7;5	53	y	0.15	14.0	79	15;13	79	y	0.06	3.0	51	5;1	51	n	0.11	10.0	84	10;10	84	y	0.11	11.5	94	15;8	94	y	0.23	9.0	31	9;9	31	y	0.13	14.0	95	14;14	95	y	0.28	12.5	32	17;8	32	y	0.14	8.5	52	7;10	52	y	0.09	10.0	103	11;9	103	y	0.11	9.0	75	9;9	75	y	0.15	13.0	74	13;13	74	y	ENSMUSG00000023206.17	Il15ra	chr2	protein_coding	interleukin 15 receptor, alpha chain
known_NIR_10199	chr2	11732644	11735382	+	11723269	11735382	A5SS	ENSMUST00000114832.3	known	1.00	5	0	5	0	n	1.00	13	0	13	0	n	1.00	1	0	1	0	n	0.91	10	1	10	1	n	1.00	8	0	8	0	n	1.00	9	0	9	0	n	1.00	14	0	14	0	n	0.89	8	1	8	1	n	0.91	10	1	10	1	n	0.64	9	5	9	5	y	1.00	9	0	9	0	n	1.00	13	0	13	0	n	ENSMUSG00000023206.17	Il15ra	chr2	protein_coding	interleukin 15 receptor, alpha chain
known_NIR_10200	chr2	11772522	11774561	-	11772522	11774587	A5SS	ENSMUST00000071564.14	known	0.33	6	12	6	12	y	0.33	3	6	3	6	n	0.26	5	14	5	14	y	0.09	2	20	2	20	y	0.26	11	31	11	31	y	0.15	2	11	2	11	y	0.04	1	24	1	24	n	0.20	3	12	3	12	y	0.14	3	18	3	18	y	0.03	1	30	1	30	n	0.29	5	12	5	12	y	0.13	3	20	3	20	y	ENSMUSG00000058594.16	Fbh1	chr2	protein_coding	F-box DNA helicase 1
known_NIR_10201	chr2	11774742	11781880	-	11774742	11782243	A5SS	ENSMUST00000071564.14	known	0.00	0	6	0	6	n	0.05	1	18	1	18	n	0.00	0	18	0	18	n	0.00	0	22	0	22	n	0.00	0	20	0	20	n	0.00	0	16	0	16	n	0.13	3	20	3	20	y	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.06	1	17	1	17	n	0.00	0	16	0	16	n	0.04	1	24	1	24	n	ENSMUSG00000058594.16	Fbh1	chr2	protein_coding	F-box DNA helicase 1
known_NIR_10202	chr2	11774742	11782215	-	11774742	11781880	A5SS	ENSMUST00000123717.8	known	1.00	13	0	13	0	n	0.80	4	1	4	1	n	1.00	10	0	10	0	n	1.00	7	0	7	0	n	1.00	8	0	8	0	n	1.00	8	0	8	0	n	0.73	8	3	8	3	y	1.00	4	0	4	0	n	1.00	4	0	4	0	n	0.90	9	1	9	1	n	1.00	4	0	4	0	n	0.80	4	1	4	1	n	ENSMUSG00000058594.16	Fbh1	chr2	protein_coding	F-box DNA helicase 1
known_NIR_10203	chr2	11774742	11782215	-	11774742	11782243	A5SS	ENSMUST00000071564.14	known	0.68	13	6	13	6	y	0.18	4	18	4	18	y	0.36	10	18	10	18	y	0.24	7	22	7	22	y	0.29	8	20	8	20	y	0.33	8	16	8	16	y	0.29	8	20	8	20	y	0.29	4	10	4	10	y	0.27	4	11	4	11	y	0.35	9	17	9	17	y	0.20	4	16	4	16	y	0.14	4	24	4	24	y	ENSMUSG00000058594.16	Fbh1	chr2	protein_coding	F-box DNA helicase 1
known_NIR_10204	chr2	11784634	11786288	+	11784708	11786288	A5SS	ENSMUST00000056108.12	known	0.53	9	8	9	8	y	0.56	9	7	9	7	y	0.83	19	4	19	4	y	0.50	11	11	11	11	y	0.49	20	21	20	21	y	0.62	10	6	10	6	y	0.74	17	6	17	6	y	0.50	13	13	13	13	y	0.72	13	5	13	5	y	0.48	14	15	14	15	y	0.55	12	10	12	10	y	0.48	14	15	14	15	y	ENSMUSG00000047909.12	Ankrd16	chr2	protein_coding	ankyrin repeat domain 16
known_NIR_10205	chr2	11786344	11788452	+	11786330	11788452	A5SS	ENSMUST00000056108.12	known	0.00	0	5	0	5	n	0.17	1	5	1	5	n	0.50	3	3	3	3	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.33	1	2	1	2	n	0.17	2	10	2	10	y	0.33	3	6	3	6	n	0.00	0	3	0	3	n	0.08	1	11	1	11	n	0.00	0	5	0	5	n	0.17	1	5	1	5	n	ENSMUSG00000047909.12	Ankrd16	chr2	protein_coding	ankyrin repeat domain 16
known_NIR_10206	chr2	11788567	11789102	+	11788560	11789102	A5SS	ENSMUST00000056108.12	known	0.37	11	19	11	19	y	0.33	11	22	11	22	y	0.19	3	13	3	13	y	0.52	15	14	15	14	y	0.33	13	26	13	26	y	0.46	13	15	13	15	y	0.32	9	19	9	19	y	0.40	10	15	10	15	y	0.43	10	13	10	13	y	0.39	13	20	13	20	y	0.48	15	16	15	16	y	0.36	12	21	12	21	y	ENSMUSG00000047909.12	Ankrd16	chr2	protein_coding	ankyrin repeat domain 16
known_NIR_10207	chr2	11789263	11789981	+	11789263	11789934	A3SS	ENSMUST00000133664.8	known	0.04	1	22	1	22	n	0.15	3	17	3	17	y	0.00	0	10	0	10	n	0.00	0	18	0	18	n	0.07	2	28	2	28	y	0.11	2	17	2	17	y	0.19	5	21	5	21	y	0.00	0	18	0	18	n	0.17	3	15	3	15	y	0.04	1	25	1	25	n	0.16	3	16	3	16	y	0.18	6	27	6	27	y	ENSMUSG00000047909.12	Ankrd16	chr2	protein_coding	ankyrin repeat domain 16
known_NIR_10208	chr2	11789263;11790071	11789934;11791035	+	11789263	11791035	cassetteExon	ENSMUST00000056108.12	known	0.44	17.5	22	22;13	22	y	0.53	16.0	14	17;15	14	y	0.43	12.0	16	10;14	16	y	0.67	18.0	9	18;18	9	y	0.51	23.5	23	28;19	23	y	0.46	12.0	14	17;7	14	y	0.47	19.0	21	21;17	21	y	0.50	18.0	18	18;18	18	y	0.55	12.0	10	15;9	10	y	0.49	29.0	30	25;33	30	y	0.68	21.0	10	16;26	10	y	0.48	24.0	26	27;21	26	y	ENSMUSG00000047909.12	Ankrd16	chr2	protein_coding	ankyrin repeat domain 16
known_NIR_10209	chr2	11789263;11790071	11789981;11791035	+	11789263	11791035	cassetteExon	ENSMUST00000056108.12	known	0.24	7.0	22	1;13	22	n	0.39	9.0	14	3;15	14	y	0.30	7.0	16	0;14	16	n	0.50	9.0	9	0;18	9	n	0.31	10.5	23	2;19	23	y	0.24	4.5	14	2;7	14	y	0.34	11.0	21	5;17	21	y	0.33	9.0	18	0;18	18	n	0.38	6.0	10	3;9	10	y	0.36	17.0	30	1;33	30	n	0.59	14.5	10	3;26	10	y	0.34	13.5	26	6;21	26	y	ENSMUSG00000047909.12	Ankrd16	chr2	protein_coding	ankyrin repeat domain 16
known_NIR_10210	chr2	118307340	118309313	-	118307340	118309402	A5SS	ENSMUST00000009693.15	known	0.00	0	364	0	364	n	0.01	4	364	4	364	y	0.00	0	432	0	432	n	0.01	2	315	2	315	y	0.00	1	419	1	419	n	0.00	0	271	0	271	n	0.00	0	431	0	431	n	0.01	1	184	1	184	n	0.00	1	265	1	265	n	0.01	3	418	3	418	y	0.01	2	384	2	384	y	0.00	0	345	0	345	n	ENSMUSG00000009549.15	Srp14	chr2	protein_coding	signal recognition particle 14
known_NIR_10211	chr2	118309931	118310031	-	118309931	118310072	A5SS	ENSMUST00000009693.15	known	0.00	1	237	1	237	n	0.00	0	195	0	195	n	0.00	0	248	0	248	n	0.00	0	208	0	208	n	0.00	1	261	1	261	n	0.01	2	168	2	168	y	0.00	0	281	0	281	n	0.01	1	135	1	135	n	0.00	0	127	0	127	n	0.00	0	252	0	252	n	0.01	2	194	2	194	y	0.00	1	214	1	214	n	ENSMUSG00000009549.15	Srp14	chr2	protein_coding	signal recognition particle 14
known_NIR_10212	chr2	118377493;118377851	118377775;118379522	-	118377493	118379522	cassetteExon	ENSMUST00000090219.13	known	0.00	0.0	4	0;0	4	n	0.00	0.0	12	0;0	12	n	0.09	0.5	5	1;0	5	n	0.08	2.5	30	3;2	30	y	0.00	0.0	3	0;0	3	n	-	-	-	-	-	-	0.11	1.0	8	1;1	8	n	0.00	0.0	7	0;0	7	n	0.13	1.5	10	1;2	10	n	0.07	1.5	21	3;0	21	n	0.08	1.0	11	1;1	11	n	0.02	0.5	21	0;1	21	n	ENSMUSG00000040093.17	Bmf	chr2	protein_coding	BCL2 modifying factor
known_NIR_10213	chr2	118702028	118703366	+	118702028	118702663	3pMXE	ENSMUST00000141836.2	known	0.97	248	7	248	7	y	0.99	190	2	190	2	y	0.95	61	3	61	3	y	0.99	386	3	386	3	y	0.98	292	6	292	6	y	0.99	73	1	73	1	n	0.98	310	5	310	5	y	0.94	113	7	113	7	y	0.99	272	3	272	3	y	0.98	438	10	438	10	y	0.98	277	5	277	5	y	0.99	450	3	450	3	y	ENSMUSG00000027332.12	Ivd	chr2	protein_coding	isovaleryl coenzyme A dehydrogenase
known_NIR_10214	chr2	118857868	118859789	-	118857868	118859798	A5SS	ENSMUST00000036470.14	known	0.22	2	7	2	7	n	0.14	2	12	2	12	y	0.65	11	6	11	6	y	0.28	5	13	5	13	y	0.38	6	10	6	10	y	0.25	3	9	3	9	y	0.50	8	8	8	8	y	0.45	5	6	5	6	y	0.56	5	4	5	4	n	0.50	5	5	5	5	y	0.00	0	9	0	9	n	0.22	4	14	4	14	y	ENSMUSG00000039983.14	Ccdc32	chr2	protein_coding	coiled-coil domain containing 32
known_NIR_10215	chr2	119011161	119011407	-	119011045	119011407	A3SS	ENSMUST00000038439.4	known	0.08	1	12	1	12	n	0.00	0	7	0	7	n	0.00	0	24	0	24	n	0.04	1	22	1	22	n	0.15	2	11	2	11	y	0.00	0	4	0	4	n	0.00	0	23	0	23	n	0.00	0	7	0	7	n	0.19	3	13	3	13	y	0.00	0	21	0	21	n	0.00	0	21	0	21	n	0.00	0	15	0	15	n	ENSMUSG00000034278.4	Dnajc17	chr2	protein_coding	DnaJ heat shock protein family (Hsp40) member C17
known_NIR_10216	chr2	119039664	119040963	+	119040713	119040963	A5SS&ES	ENSMUST00000149036.8	known	0.84	32	6	32	6	y	0.94	29	2	29	2	y	1.00	28	0	28	0	n	0.90	38	4	38	4	y	0.87	39	6	39	6	y	0.86	18	3	18	3	y	0.81	35	8	35	8	y	1.00	20	0	20	0	n	0.84	21	4	21	4	y	0.88	37	5	37	5	y	0.84	31	6	31	6	y	1.00	46	0	46	0	n	ENSMUSG00000068580.12	Zfyve19	chr2	protein_coding	zinc finger, FYVE domain containing 19
known_NIR_10217	chr2	119039664;119040713	119040611;119040963	+	119039664	119040963	cassetteExon	ENSMUST00000090174.11	known	0.11	4.0	32	2;6	32	y	0.03	1.0	29	0;2	29	n	0.00	0.0	28	0;0	28	n	0.08	3.5	38	3;4	38	y	0.09	4.0	39	2;6	39	y	0.10	2.0	18	1;3	18	n	0.17	7.0	35	6;8	35	y	0.05	1.0	20	2;0	20	n	0.09	2.0	21	0;4	21	n	0.10	4.0	37	3;5	37	y	0.09	3.0	31	0;6	31	n	0.04	2.0	46	4;0	46	n	ENSMUSG00000068580.12	Zfyve19	chr2	protein_coding	zinc finger, FYVE domain containing 19
known_NIR_10218	chr2	119039664;119040713	119040616;119040963	+	119039664	119040963	cassetteExon	ENSMUST00000090174.11	known	0.09	3.0	32	0;6	32	n	0.03	1.0	29	0;2	29	n	0.00	0.0	28	0;0	28	n	0.05	2.0	38	0;4	38	n	0.08	3.5	39	1;6	39	n	0.08	1.5	18	0;3	18	n	0.10	4.0	35	0;8	35	n	0.00	0.0	20	0;0	20	n	0.09	2.0	21	0;4	21	n	0.06	2.5	37	0;5	37	n	0.11	4.0	31	2;6	31	y	0.01	0.5	46	1;0	46	n	ENSMUSG00000068580.12	Zfyve19	chr2	protein_coding	zinc finger, FYVE domain containing 19
known_NIR_10219	chr2	119042024	119042111	+	119042024	119042387	A3SS	ENSMUST00000090174.11	known	0.07	4	55	4	55	y	0.25	14	41	14	41	y	0.19	9	38	9	38	y	0.13	5	33	5	33	y	0.09	6	61	6	61	y	0.19	5	22	5	22	y	0.21	14	53	14	53	y	0.21	6	22	6	22	y	0.10	4	38	4	38	y	0.07	5	64	5	64	y	0.12	6	44	6	44	y	0.10	6	56	6	56	y	ENSMUSG00000068580.12	Zfyve19	chr2	protein_coding	zinc finger, FYVE domain containing 19
known_NIR_10220	chr2	119046788	119047110	+	119046788;119047022	119046913;119047110	ES	ENSMUST00000090174.11	known	0.02	1	61.5	1	39;84	n	0.02	1	49.0	1	36;62	n	0.03	1	39.0	1	31;47	n	0.00	0	42.5	0	34;51	n	0.00	0	61.0	0	43;79	n	0.00	0	26.0	0	21;31	n	0.00	0	52.0	0	41;63	n	0.00	0	31.0	0	30;32	n	0.02	1	40.0	1	35;45	n	0.03	2	66.5	2	54;79	y	0.03	2	63.5	2	61;66	y	0.02	1	62.5	1	49;76	n	ENSMUSG00000068580.12	Zfyve19	chr2	protein_coding	zinc finger, FYVE domain containing 19
known_NIR_10221	chr2	119046788	119047110	+	119047022	119047110	A5SS	ENSMUST00000147584.2	known	0.01	1	84	1	84	n	0.02	1	62	1	62	n	0.02	1	47	1	47	n	0.00	0	51	0	51	n	0.00	0	79	0	79	n	0.00	0	31	0	31	n	0.00	0	63	0	63	n	0.00	0	32	0	32	n	0.02	1	45	1	45	n	0.02	2	79	2	79	y	0.03	2	66	2	66	y	0.01	1	76	1	76	n	ENSMUSG00000068580.12	Zfyve19	chr2	protein_coding	zinc finger, FYVE domain containing 19
known_NIR_10222	chr2	119426992	119430069	+	119426823	119430069	A5SS	ENSMUST00000147425.2	known	0.51	18	17	18	17	y	0.66	21	11	21	11	y	0.68	49	23	49	23	y	0.62	36	22	36	22	y	0.60	42	28	42	28	y	0.49	22	23	22	23	y	0.49	41	42	41	42	y	0.60	29	19	29	19	y	0.64	21	12	21	12	y	0.68	49	23	49	23	y	0.81	46	11	46	11	y	0.58	47	34	47	34	y	ENSMUSG00000085438.2	Oip5os1	chr2	lncRNA	Opa interacting protein 5, opposite strand 1
known_NIR_10223	chr2	119491140	119493074	-	119491140	119493090	A5SS	ENSMUST00000110801.8	known	0.12	3	23	3	23	y	0.14	2	12	2	12	y	0.12	3	22	3	22	y	0.13	5	33	5	33	y	0.06	2	33	2	33	y	0.15	3	17	3	17	y	0.08	2	22	2	22	y	0.27	3	8	3	8	y	0.08	2	22	2	22	y	0.11	2	17	2	17	y	0.00	0	20	0	20	n	0.12	4	30	4	30	y	ENSMUSG00000027305.10	Ndufaf1	chr2	protein_coding	NADH:ubiquinone oxidoreductase complex assembly factor 1
known_NIR_10224	chr2	119491140	119493074	-	119491140	119493261	A5SS	ENSMUST00000110802.8	known	0.15	3	17	3	17	y	0.22	2	7	2	7	n	0.23	3	10	3	10	y	0.20	5	20	5	20	y	0.08	2	24	2	24	y	1.00	3	0	3	0	n	0.13	2	13	2	13	y	0.23	3	10	3	10	y	0.09	2	20	2	20	y	0.07	2	25	2	25	y	0.00	0	11	0	11	n	0.17	4	20	4	20	y	ENSMUSG00000027305.10	Ndufaf1	chr2	protein_coding	NADH:ubiquinone oxidoreductase complex assembly factor 1
known_NIR_10225	chr2	119491140	119493240	-	119491140	119493090	A5SS	ENSMUST00000110801.8	known	0.00	0	23	0	23	n	0.00	0	12	0	12	n	0.00	0	22	0	22	n	0.06	2	33	2	33	y	0.03	1	33	1	33	n	0.00	0	17	0	17	n	0.04	1	22	1	22	n	0.11	1	8	1	8	n	0.00	0	22	0	22	n	0.00	0	17	0	17	n	0.05	1	20	1	20	n	0.00	0	30	0	30	n	ENSMUSG00000027305.10	Ndufaf1	chr2	protein_coding	NADH:ubiquinone oxidoreductase complex assembly factor 1
known_NIR_10226	chr2	119491140	119493240	-	119491140	119493261	A5SS	ENSMUST00000110802.8	known	0.00	0	17	0	17	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.09	2	20	2	20	y	0.04	1	24	1	24	n	-	-	-	-	-	-	0.07	1	13	1	13	n	0.09	1	10	1	10	n	0.00	0	20	0	20	n	0.00	0	25	0	25	n	0.08	1	11	1	11	n	0.00	0	20	0	20	n	ENSMUSG00000027305.10	Ndufaf1	chr2	protein_coding	NADH:ubiquinone oxidoreductase complex assembly factor 1
known_NIR_10227	chr2	119491140	119493261	-	119491140	119493090	A5SS	ENSMUST00000110801.8	known	0.42	17	23	17	23	y	0.37	7	12	7	12	y	0.31	10	22	10	22	y	0.38	20	33	20	33	y	0.42	24	33	24	33	y	0.00	0	17	0	17	n	0.37	13	22	13	22	y	0.56	10	8	10	8	y	0.48	20	22	20	22	y	0.60	25	17	25	17	y	0.35	11	20	11	20	y	0.40	20	30	20	30	y	ENSMUSG00000027305.10	Ndufaf1	chr2	protein_coding	NADH:ubiquinone oxidoreductase complex assembly factor 1
known_NIR_10228	chr2	119505761;119522021	119521904;119522597	+	119505761	119522597	cassetteExon	ENSMUST00000028767.9	known	0.00	0.0	19	0;0	19	n	0.00	0.0	17	0;0	17	n	0.08	2.0	23	1;3	23	n	0.12	2.5	18	2;3	18	y	0.04	1.0	27	0;2	27	n	0.00	0.0	13	0;0	13	n	0.08	1.5	17	2;1	17	n	0.00	0.0	14	0;0	14	n	0.00	0.0	8	0;0	8	n	0.10	2.5	22	1;4	22	n	0.00	0.0	18	0;0	18	n	0.14	3.0	18	1;5	18	n	ENSMUSG00000027304.10	Rtf1	chr2	protein_coding	RTF1, Paf1/RNA polymerase II complex component
known_NIR_10229	chr2	119614451	119617896	-	119614451;119617778	119617702;119617896	ES	ENSMUST00000099529.9	known	0.80	4	1.0	4	0;2	n	0.75	3	1.0	3	2;0	n	0.78	7	2.0	7	3;1	n	0.80	8	2.0	8	3;1	n	0.63	6	3.5	6	4;3	y	0.75	3	1.0	3	2;0	n	0.91	5	0.5	5	1;0	n	0.86	6	1.0	6	1;1	n	0.57	4	3.0	4	5;1	n	0.44	2	2.5	2	2;3	n	0.80	2	0.5	2	0;1	n	0.62	4	2.5	4	5;0	n	ENSMUSG00000034032.16	Rpap1	chr2	protein_coding	RNA polymerase II associated protein 1
known_NIR_10230	chr2	119769267	119771703	+	119769267	119776653	A3SS	ENSMUST00000079934.12	known	1.00	7	0	7	0	n	1.00	4	0	4	0	n	1.00	6	0	6	0	n	0.77	10	3	10	3	y	0.86	6	1	6	1	n	0.67	2	1	2	1	n	1.00	7	0	7	0	n	0.75	3	1	3	1	n	1.00	4	0	4	0	n	1.00	9	0	9	0	n	1.00	5	0	5	0	n	1.00	10	0	10	0	n	ENSMUSG00000033943.16	Mga	chr2	protein_coding	MAX gene associated
known_NIR_10231	chr2	119769267	119776653	+	119769267;119772326	119771703;119776653	ES	ENSMUST00000046717.13	known	0.00	0	5.0	0	7;3	n	0.00	0	4.0	0	4;4	n	0.00	0	7.0	0	6;8	n	0.23	3	10.0	3	10;10	y	0.13	1	6.5	1	6;7	n	0.33	1	2.0	1	2;2	n	0.00	0	9.0	0	7;11	n	0.18	1	4.5	1	3;6	n	0.00	0	4.0	0	4;4	n	0.00	0	8.5	0	9;8	n	0.00	0	5.0	0	5;5	n	0.00	0	9.5	0	10;9	n	ENSMUSG00000033943.16	Mga	chr2	protein_coding	MAX gene associated
known_NIR_10232	chr2	119769267	119776653	+	119772326	119776653	5pMXE	ENSMUST00000138851.8	known	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.23	3	10	3	10	y	0.12	1	7	1	7	n	0.33	1	2	1	2	n	0.00	0	11	0	11	n	0.14	1	6	1	6	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	ENSMUSG00000033943.16	Mga	chr2	protein_coding	MAX gene associated
known_NIR_10233	chr2	119858057	119860624	+	119858057	119860539	A3SS	ENSMUST00000044675.5	known	0.50	1	1	1	1	n	0.50	3	3	3	3	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.38	3	5	3	5	n	0.22	2	7	2	7	n	0.21	3	11	3	11	y	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	ENSMUSG00000098789.8	Jmjd7	chr2	protein_coding	jumonji domain containing 7
known_NIR_10234	chr2	119861883	119861983	+	119861883	119862056	A3SS	ENSMUST00000044675.5	known	0.09	1	10	1	10	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.33	2	4	2	4	n	0.13	2	13	2	13	y	0.20	2	8	2	8	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.10	1	9	1	9	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	ENSMUSG00000098789.8	Jmjd7	chr2	protein_coding	jumonji domain containing 7
known_NIR_10235	chr2	120190572	120193360	-	120190575	120193360	A3SS	ENSMUST00000090042.12	known	0.07	2	26	2	26	y	0.08	2	22	2	22	y	0.11	3	24	3	24	y	0.17	2	10	2	10	y	0.06	2	29	2	29	y	0.00	0	22	0	22	n	0.00	0	23	0	23	n	0.05	1	19	1	19	n	0.14	2	12	2	12	y	0.07	2	27	2	27	y	0.00	0	16	0	16	n	0.00	0	29	0	29	n	ENSMUSG00000033808.17	Tmem87a	chr2	protein_coding	transmembrane protein 87A
known_NIR_10236	chr2	120202113;120205040	120204969;120205900	-	120202113;120204460	120204392;120205900	MXE	ENSMUST00000090042.12	known	0.35	3.0	5.5	3;3	6;5	y	0.36	4.5	8.0	4;5	9;7	y	0.33	6.5	13.0	7;6	15;11	y	0.31	4.5	10.0	4;5	9;11	y	0.39	8.0	12.5	7;9	11;14	y	0.38	2.5	4.0	4;1	4;4	n	0.37	9.0	15.5	10;8	14;17	y	0.46	3.0	3.5	4;2	3;4	y	0.38	4.5	7.5	3;6	8;7	y	0.52	7.0	6.5	10;4	8;5	y	0.40	5.0	7.5	10;0	9;6	n	0.43	6.5	8.5	7;6	10;7	y	ENSMUSG00000033808.17	Tmem87a	chr2	protein_coding	transmembrane protein 87A
known_NIR_10237	chr2	120234750	120236747	+	120235540	120236747	A5SS	ENSMUST00000154574.8	known	0.05	1	20	1	20	n	0.14	2	12	2	12	y	0.12	2	15	2	15	y	0.00	0	23	0	23	n	0.19	5	22	5	22	y	0.06	1	15	1	15	n	0.00	0	27	0	27	n	0.17	3	15	3	15	y	0.20	3	12	3	12	y	0.15	4	23	4	23	y	0.09	2	21	2	21	y	0.00	0	19	0	19	n	ENSMUSG00000062646.13	Ganc	chr2	protein_coding	glucosidase, alpha; neutral C
known_NIR_10238	chr2	120235125	120236747	+	120235540	120236747	A5SS	ENSMUST00000154574.8	known	0.00	0	20	0	20	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.00	0	23	0	23	n	0.08	2	22	2	22	y	0.00	0	15	0	15	n	0.00	0	27	0	27	n	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.00	0	23	0	23	n	0.00	0	21	0	21	n	0.00	0	19	0	19	n	ENSMUSG00000062646.13	Ganc	chr2	protein_coding	glucosidase, alpha; neutral C
known_NIR_10239	chr2	120242024	120244718	+	120242024	120249839	A3SS	ENSMUST00000154574.8	known	0.00	0	18	0	18	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	27	0	27	n	0.06	2	29	2	29	y	0.09	1	10	1	10	n	0.05	1	19	1	19	n	0.00	0	11	0	11	n	0.08	2	22	2	22	y	0.00	0	32	0	32	n	0.00	0	14	0	14	n	0.00	0	24	0	24	n	ENSMUSG00000062646.13	Ganc	chr2	protein_coding	glucosidase, alpha; neutral C
known_NIR_10240	chr2	120242024	120245550	+	120242024	120249839	A3SS	ENSMUST00000154574.8	known	0.10	2	18	2	18	y	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	27	0	27	n	0.03	1	29	1	29	n	0.00	0	10	0	10	n	0.10	2	19	2	19	y	0.08	1	11	1	11	n	0.00	0	22	0	22	n	0.00	0	32	0	32	n	0.12	2	14	2	14	y	0.04	1	24	1	24	n	ENSMUSG00000062646.13	Ganc	chr2	protein_coding	glucosidase, alpha; neutral C
known_NIR_10241	chr2	120249921	120252506	+	120249966	120252506	A5SS	ENSMUST00000154574.8	known	0.12	2	14	2	14	y	0.10	1	9	1	9	n	0.00	0	9	0	9	n	0.08	1	12	1	12	n	0.00	0	29	0	29	n	0.00	0	9	0	9	n	0.00	0	22	0	22	n	0.00	0	13	0	13	n	0.00	0	20	0	20	n	0.11	3	25	3	25	y	0.00	0	14	0	14	n	0.12	4	28	4	28	y	ENSMUSG00000062646.13	Ganc	chr2	protein_coding	glucosidase, alpha; neutral C
known_NIR_10242	chr2	120315830;120316957	120316814;120318555	+	120315830	120318555	cassetteExon	ENSMUST00000145993.9	known	0.00	0.0	1	0;0	1	n	0.00	0.0	1	0;0	1	n	-	-	-	-	-	-	0.00	0.0	2	0;0	2	n	0.00	0.0	2	0;0	2	n	-	-	-	-	-	-	0.81	8.5	2	10;7	2	y	0.00	0.0	1	0;0	1	n	0.00	0.0	1	0;0	1	n	0.00	0.0	9	0;0	9	n	0.00	0.0	4	0;0	4	n	0.00	0.0	1	0;0	1	n	ENSMUSG00000118623.2	Gm52968	chr2	protein_coding	predicted gene, 52968
known_NIR_10243	chr2	120359110	120362076	-	120359110;120360998	120360929;120362076	ES	ENSMUST00000055241.13	known	0.03	1	31.5	1	30;33	n	0.00	0	33.0	0	38;28	n	0.00	0	92.5	0	89;96	n	0.00	0	44.5	0	45;44	n	0.00	0	65.5	0	52;79	n	0.00	0	32.0	0	37;27	n	0.00	0	87.0	0	87;87	n	0.00	0	39.0	0	42;36	n	0.00	0	30.0	0	21;39	n	0.04	2	54.5	2	61;48	y	0.00	0	43.0	0	39;47	n	0.00	0	51.5	0	54;49	n	ENSMUSG00000027288.17	Zfp106	chr2	protein_coding	zinc finger protein 106
known_NIR_10244	chr2	120362703	120363992	-	120362703	120376324	A5SS	ENSMUST00000135625.8	known	0.85	41	7	41	7	y	0.93	25	2	25	2	y	0.80	69	17	69	17	y	0.98	43	1	43	1	n	0.76	63	20	63	20	y	0.71	27	11	27	11	y	0.87	92	14	92	14	y	0.79	41	11	41	11	y	0.81	22	5	22	5	y	0.85	45	8	45	8	y	0.77	27	8	27	8	y	0.86	43	7	43	7	y	ENSMUSG00000027288.17	Zfp106	chr2	protein_coding	zinc finger protein 106
known_NIR_10245	chr2	120366160	120376324	-	120362703	120376324	A3SS	ENSMUST00000135625.8	known	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.23	5	17	5	17	y	0.67	2	1	2	1	n	0.13	3	20	3	20	y	0.31	5	11	5	11	y	0.07	1	14	1	14	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.11	1	8	1	8	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	ENSMUSG00000027288.17	Zfp106	chr2	protein_coding	zinc finger protein 106
known_NIR_10246	chr2	120366160	120376324	-	120366160	120369776	5pMXE	ENSMUST00000171215.8	known	0.00	0	22	0	22	n	0.00	0	19	0	19	n	0.08	5	58	5	58	y	0.07	2	27	2	27	y	0.05	3	60	3	60	y	0.10	5	43	5	43	y	0.01	1	87	1	87	n	0.00	0	48	0	48	n	0.00	0	41	0	41	n	0.02	1	55	1	55	n	0.00	0	28	0	28	n	0.00	0	39	0	39	n	ENSMUSG00000027288.17	Zfp106	chr2	protein_coding	zinc finger protein 106
known_NIR_10247	chr2	120366160	120376324	-	120366160;120369973	120369776;120376324	ES	ENSMUST00000055241.13	known	0.00	0	21.5	0	22;21	n	0.00	0	16.0	0	19;13	n	0.10	5	47.5	5	58;37	y	0.07	2	25.0	2	27;23	y	0.07	3	42.5	3	60;25	y	0.12	5	36.5	5	43;30	y	0.02	1	63.5	1	87;40	n	0.00	0	29.5	0	48;11	n	0.00	0	30.5	0	41;20	n	0.02	1	40.5	1	55;26	n	0.00	0	21.5	0	28;15	n	0.00	0	39.0	0	39;39	n	ENSMUSG00000027288.17	Zfp106	chr2	protein_coding	zinc finger protein 106
known_NIR_10248	chr2	120366160;120369973	120369776;120385712	-	120366160;120376385	120376324;120385712	MXE	ENSMUST00000167241.2	known	0.47	11.0	12.5	22;0	0;25	n	0.61	9.5	6.0	19;0	0;12	n	0.43	30.0	39.5	58;2	5;74	y	0.42	13.5	19.0	27;0	2;36	n	0.51	32.5	31.0	60;5	3;59	y	0.48	22.0	23.5	43;1	5;42	n	0.57	45.0	34.0	87;3	1;67	n	0.60	25.0	17.0	48;2	0;34	n	0.62	20.5	12.5	41;0	0;25	n	0.52	27.5	25.0	55;0	1;49	n	0.58	14.5	10.5	28;1	0;21	n	0.48	19.5	21.0	39;0	0;42	n	ENSMUSG00000027288.17	Zfp106	chr2	protein_coding	zinc finger protein 106
known_NIR_10249	chr2	120369973	120376324	-	120362703	120376324	A3SS	ENSMUST00000135625.8	known	0.75	21	7	21	7	y	0.87	13	2	13	2	y	0.69	37	17	37	17	y	0.96	23	1	23	1	n	0.56	25	20	25	20	y	0.73	30	11	30	11	y	0.74	40	14	40	14	y	0.50	11	11	11	11	y	0.80	20	5	20	5	y	0.76	26	8	26	8	y	0.65	15	8	15	8	y	0.85	39	7	39	7	y	ENSMUSG00000027288.17	Zfp106	chr2	protein_coding	zinc finger protein 106
known_NIR_10250	chr2	120369973	120385712	-	120369973;120376385	120376324;120385712	ES	ENSMUST00000055241.13	known	0.00	0	23.0	0	21;25	n	0.00	0	12.5	0	13;12	n	0.03	2	55.5	2	37;74	y	0.00	0	29.5	0	23;36	n	0.11	5	42.0	5	25;59	y	0.03	1	36.0	1	30;42	n	0.05	3	53.5	3	40;67	y	0.08	2	22.5	2	11;34	y	0.00	0	22.5	0	20;25	n	0.00	0	37.5	0	26;49	n	0.05	1	18.0	1	15;21	n	0.00	0	40.5	0	39;42	n	ENSMUSG00000027288.17	Zfp106	chr2	protein_coding	zinc finger protein 106
known_NIR_10251	chr2	120369973	120385712	-	120376385	120385712	A3SS&ES	ENSMUST00000135625.8	known	0.00	0	25	0	25	n	0.00	0	12	0	12	n	0.03	2	74	2	74	y	0.00	0	36	0	36	n	0.08	5	59	5	59	y	0.02	1	42	1	42	n	0.04	3	67	3	67	y	0.06	2	34	2	34	y	0.00	0	25	0	25	n	0.00	0	49	0	49	n	0.05	1	21	1	21	n	0.00	0	42	0	42	n	ENSMUSG00000027288.17	Zfp106	chr2	protein_coding	zinc finger protein 106
known_NIR_10252	chr2	120398242	120414750	+	120398287	120414750	A5SS	ENSMUST00000110711.9	known	0.03	2	64	2	64	y	0.02	1	52	1	52	n	0.07	6	83	6	83	y	0.04	4	89	4	89	y	0.05	6	105	6	105	y	0.09	5	53	5	53	y	0.03	2	66	2	66	y	0.04	2	49	2	49	y	0.12	5	35	5	35	y	0.07	4	56	4	56	y	0.12	6	42	6	42	y	0.11	9	73	9	73	y	ENSMUSG00000027287.15	Snap23	chr2	protein_coding	synaptosomal-associated protein 23
known_NIR_10253	chr2	120399863	120414750	+	120398242	120414750	A5SS	ENSMUST00000028743.10	known	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.00	0	6	0	6	n	0.18	2	9	2	9	y	ENSMUSG00000027287.15	Snap23	chr2	protein_coding	synaptosomal-associated protein 23
known_NIR_10254	chr2	120416757;120421176	120421144;120425282	+	120416757	120425282	cassetteExon	ENSMUST00000110711.9	known	0.00	0.0	79	0;0	79	n	0.00	0.0	60	0;0	60	n	0.00	0.0	90	0;0	90	n	0.00	0.0	90	0;0	90	n	0.00	0.0	112	0;0	112	n	0.00	0.0	48	0;0	48	n	0.09	9.0	95	8;10	95	y	0.00	0.0	60	0;0	60	n	0.00	0.0	64	0;0	64	n	0.00	0.0	89	0;0	89	n	0.00	0.0	57	0;0	57	n	0.00	0.0	106	0;0	106	n	ENSMUSG00000027287.15	Snap23	chr2	protein_coding	synaptosomal-associated protein 23
known_NIR_10255	chr2	120421098	120425282	+	120416757	120425282	A5SS	ENSMUST00000110711.9	known	0.00	0	79	0	79	n	0.00	0	60	0	60	n	0.00	0	90	0	90	n	0.00	0	90	0	90	n	0.00	0	112	0	112	n	0.00	0	48	0	48	n	0.01	1	95	1	95	n	0.00	0	60	0	60	n	0.00	0	64	0	64	n	0.00	0	89	0	89	n	0.03	2	57	2	57	y	0.00	0	106	0	106	n	ENSMUSG00000027287.15	Snap23	chr2	protein_coding	synaptosomal-associated protein 23
known_NIR_10256	chr2	120439504	120439596	-	120439504	120439670	A5SS	ENSMUST00000102496.8	known	1.00	1	0	1	0	n	0.83	5	1	5	1	n	0.83	5	1	5	1	n	1.00	1	0	1	0	n	1.00	4	0	4	0	n	1.00	1	0	1	0	n	1.00	8	0	8	0	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.85	11	2	11	2	y	1.00	3	0	3	0	n	0.67	4	2	4	2	n	ENSMUSG00000027286.17	Lrrc57	chr2	protein_coding	leucine rich repeat containing 57
known_NIR_10257	chr2	120439504	120439755	-	120439504	120439596	A5SS	ENSMUST00000102497.10	known	0.92	12	1	12	1	n	0.50	5	5	5	5	y	0.74	14	5	14	5	y	0.91	10	1	10	1	n	0.64	7	4	7	4	y	0.83	5	1	5	1	n	0.53	9	8	9	8	y	0.88	7	1	7	1	n	1.00	14	0	14	0	n	0.54	13	11	13	11	y	0.79	11	3	11	3	y	0.50	4	4	4	4	n	ENSMUSG00000027286.17	Lrrc57	chr2	protein_coding	leucine rich repeat containing 57
known_NIR_10258	chr2	120439504	120439755	-	120439504	120439670	A5SS	ENSMUST00000102496.8	known	1.00	12	0	12	0	n	0.83	5	1	5	1	n	0.93	14	1	14	1	n	1.00	10	0	10	0	n	1.00	7	0	7	0	n	1.00	5	0	5	0	n	1.00	9	0	9	0	n	1.00	7	0	7	0	n	0.88	14	2	14	2	y	0.87	13	2	13	2	y	1.00	11	0	11	0	n	0.67	4	2	4	2	n	ENSMUSG00000027286.17	Lrrc57	chr2	protein_coding	leucine rich repeat containing 57
known_NIR_10259	chr2	120439504	120439755	-	120439504	120439762	A5SS	ENSMUST00000102499.8	known	0.57	12	9	12	9	y	0.31	5	11	5	11	y	0.70	14	6	14	6	y	0.50	10	10	10	10	y	0.58	7	5	7	5	y	1.00	5	0	5	0	n	0.69	9	4	9	4	y	0.78	7	2	7	2	n	0.82	14	3	14	3	y	0.65	13	7	13	7	y	0.79	11	3	11	3	y	0.57	4	3	4	3	n	ENSMUSG00000027286.17	Lrrc57	chr2	protein_coding	leucine rich repeat containing 57
known_NIR_10260	chr2	120439504	120439762	-	120439504	120439596	A5SS	ENSMUST00000102497.10	known	0.90	9	1	9	1	n	0.69	11	5	11	5	y	0.55	6	5	6	5	y	0.91	10	1	10	1	n	0.56	5	4	5	4	n	0.00	0	1	0	1	n	0.33	4	8	4	8	y	0.67	2	1	2	1	n	1.00	3	0	3	0	n	0.39	7	11	7	11	y	0.50	3	3	3	3	n	0.43	3	4	3	4	n	ENSMUSG00000027286.17	Lrrc57	chr2	protein_coding	leucine rich repeat containing 57
known_NIR_10261	chr2	120440139	120442819	+	120440026	120442819	A5SS	ENSMUST00000028741.14	known	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.06	1	15	1	15	n	0.14	2	12	2	12	y	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	16	0	16	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.14	2	12	2	12	y	ENSMUSG00000027285.14	Haus2	chr2	protein_coding	HAUS augmin-like complex, subunit 2
known_NIR_10262	chr2	120442911;120443601	120443532;120446336	+	120442911	120446336	cassetteExon	ENSMUST00000028741.14	known	1.00	12.0	0	15;9	0	n	0.71	14.5	6	11;18	6	y	0.89	16.5	2	15;18	2	y	1.00	18.5	0	16;21	0	n	0.71	22.5	9	24;21	9	y	0.90	9.5	1	9;10	1	n	0.59	14.5	10	12;17	10	y	1.00	6.0	0	7;5	0	n	1.00	14.0	0	14;14	0	n	0.89	16.0	2	19;13	2	y	0.71	12.0	5	12;12	5	y	0.75	18.0	6	27;9	6	y	ENSMUSG00000027285.14	Haus2	chr2	protein_coding	HAUS augmin-like complex, subunit 2
known_NIR_10263	chr2	120560983	120561183	-	120560986	120561183	A3SS	ENSMUST00000110701.8	known	0.75	3	1	3	1	n	0.00	0	2	0	2	n	0.33	4	8	4	8	y	0.14	1	6	1	6	n	0.36	4	7	4	7	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.57	4	3	4	3	n	ENSMUSG00000027284.17	Cdan1	chr2	protein_coding	congenital dyserythropoietic anemia, type I (human)
known_NIR_10264	chr2	120653089	120680537	-	120653089	120655723	A5SS&ES	ENSMUST00000028740.11	known	0.38	3	5	3	5	n	1.00	1	0	1	0	n	0.30	3	7	3	7	y	0.00	0	3	0	3	n	0.29	4	10	4	10	y	0.50	4	4	4	4	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.12	1	7	1	7	n	0.43	3	4	3	4	n	-	-	-	-	-	-	0.80	4	1	4	1	n	ENSMUSG00000090100.8	Ttbk2	chr2	protein_coding	tau tubulin kinase 2
known_NIR_10265	chr2	120653089;120655796	120655723;120680537	-	120653089	120680537	cassetteExon	ENSMUST00000148285.8	known	0.57	4.0	3	5;3	3	y	0.00	0.0	1	0;0	1	n	0.68	6.5	3	7;6	3	y	1.00	2.5	0	3;2	0	n	0.60	6.0	4	10;2	4	y	0.47	3.5	4	4;3	4	y	0.86	6.0	1	5;7	1	n	1.00	2.5	0	2;3	0	n	0.80	4.0	1	7;1	1	n	0.50	3.0	3	4;2	3	n	1.00	0.5	0	0;1	0	n	0.43	3.0	4	1;5	4	n	ENSMUSG00000027284.17	Cdan1	chr2	protein_coding	congenital dyserythropoietic anemia, type I (human)
known_NIR_10266	chr2	120817188	120817397	+	120817188	120817317	A3SS	ENSMUST00000067582.14	known	0.00	0	28	0	28	n	0.00	0	18	0	18	n	0.00	0	59	0	59	n	0.00	0	37	0	37	n	0.11	4	34	4	34	y	0.05	2	37	2	37	y	0.00	0	16	0	16	n	0.03	1	32	1	32	n	0.16	3	16	3	16	y	0.00	0	27	0	27	n	0.00	0	10	0	10	n	0.00	0	33	0	33	n	ENSMUSG00000054484.15	Tmem62	chr2	protein_coding	transmembrane protein 62
known_NIR_10267	chr2	120817439	120820812	+	120817439	120826887	A3SS	ENSMUST00000139428.8	known	1.00	34	0	34	0	n	0.91	20	2	20	2	y	1.00	101	0	101	0	n	1.00	34	0	34	0	n	1.00	40	0	40	0	n	0.98	53	1	53	1	n	1.00	31	0	31	0	n	1.00	39	0	39	0	n	1.00	31	0	31	0	n	0.94	34	2	34	2	y	1.00	20	0	20	0	n	0.94	32	2	32	2	y	ENSMUSG00000054484.15	Tmem62	chr2	protein_coding	transmembrane protein 62
known_NIR_10268	chr2	120824118	120826887	+	120817439	120826887	A5SS	ENSMUST00000139428.8	known	1.00	27	0	27	0	n	0.91	20	2	20	2	y	1.00	77	0	77	0	n	1.00	38	0	38	0	n	1.00	62	0	62	0	n	0.98	45	1	45	1	n	1.00	32	0	32	0	n	1.00	40	0	40	0	n	1.00	33	0	33	0	n	0.96	43	2	43	2	y	1.00	21	0	21	0	n	0.94	34	2	34	2	y	ENSMUSG00000054484.15	Tmem62	chr2	protein_coding	transmembrane protein 62
known_NIR_10269	chr2	120842039	120842164	+	120842011	120842164	A5SS	ENSMUST00000060455.15	known	0.00	0	37	0	37	n	0.00	0	40	0	40	n	0.00	0	59	0	59	n	0.04	2	50	2	50	y	0.00	0	55	0	55	n	0.00	0	26	0	26	n	0.00	0	67	0	67	n	0.00	0	28	0	28	n	0.05	2	40	2	40	y	0.03	2	67	2	67	y	0.02	1	43	1	43	n	0.00	0	48	0	48	n	ENSMUSG00000023572.17	Ccndbp1	chr2	protein_coding	cyclin D-type binding-protein 1
known_NIR_10270	chr2	120844499	120844994	+	120844499	120846612	A3SS	ENSMUST00000060455.15	known	0.12	6	44	6	44	y	0.00	0	55	0	55	n	0.05	3	55	3	55	y	0.09	4	42	4	42	y	0.06	4	61	4	61	y	0.13	4	26	4	26	y	0.06	4	63	4	63	y	0.12	5	37	5	37	y	0.16	8	41	8	41	y	0.11	6	48	6	48	y	0.05	3	59	3	59	y	0.15	11	63	11	63	y	ENSMUSG00000023572.17	Ccndbp1	chr2	protein_coding	cyclin D-type binding-protein 1
known_NIR_10271	chr2	120971090	120972574	+	120971147	120972574	A5SS	ENSMUST00000130221.8	known	0.14	3	19	3	19	y	0.13	2	13	2	13	y	0.12	2	15	2	15	y	0.33	7	14	7	14	y	0.31	10	22	10	22	y	0.11	1	8	1	8	n	0.23	5	17	5	17	y	0.44	8	10	8	10	y	0.29	4	10	4	10	y	0.19	5	21	5	21	y	0.14	2	12	2	12	y	0.25	4	12	4	12	y	ENSMUSG00000027259.16	Adal	chr2	protein_coding	adenosine deaminase-like
known_NIR_10272	chr2	120972784	120973630	+	120972784;120973135	120973005;120973630	ES	ENSMUST00000130221.8	known	0.50	15	15.0	15	15;15	y	0.47	7	8.0	7	8;8	y	0.48	8	8.5	8	6;11	y	0.24	5	16.0	5	14;18	y	0.23	6	20.0	6	27;13	y	0.54	11	9.5	11	9;10	y	0.39	10	15.5	10	13;18	y	0.34	8	15.5	8	21;10	y	0.33	5	10.0	5	8;12	y	0.40	11	16.5	11	17;16	y	0.40	7	10.5	7	6;15	y	0.33	11	22.0	11	27;17	y	ENSMUSG00000027259.16	Adal	chr2	protein_coding	adenosine deaminase-like
known_NIR_10273	chr2	120973690;120976601	120976514;120980701	+	120973690	120980701	cassetteExon	ENSMUST00000147271.8	known	1.00	8.5	0	15;2	0	n	1.00	6.0	0	11;1	0	n	0.87	13.5	2	20;7	2	y	1.00	7.5	0	14;1	0	n	1.00	15.5	0	28;3	0	n	1.00	12.0	0	21;3	0	n	1.00	16.5	0	31;2	0	n	1.00	7.0	0	14;0	0	n	1.00	8.5	0	16;1	0	n	1.00	17.0	0	31;3	0	n	1.00	11.5	0	17;6	0	n	1.00	16.5	0	28;5	0	n	ENSMUSG00000027259.16	Adal	chr2	protein_coding	adenosine deaminase-like
known_NIR_10274	chr2	120976601	120980701	+	120976601;120978803	120978722;120980701	ES	ENSMUST00000028702.10	known	0.11	2	17.0	2	19;15	y	0.06	1	15.0	1	11;19	n	0.29	7	17.0	7	17;17	y	0.04	1	21.5	1	23;20	n	0.08	3	36.5	3	33;40	y	0.19	3	13.0	3	15;11	y	0.07	2	27.0	2	27;27	y	0.00	0	15.0	0	15;15	n	0.06	1	14.5	1	10;19	n	0.09	3	29.0	3	28;30	y	0.32	6	13.0	6	14;12	y	0.17	5	24.0	5	26;22	y	ENSMUSG00000027259.16	Adal	chr2	protein_coding	adenosine deaminase-like
known_NIR_10275	chr2	120978803	120980701	+	120973690	120980701	A5SS	ENSMUST00000147271.8	known	1.00	15	0	15	0	n	1.00	19	0	19	0	n	0.89	17	2	17	2	y	1.00	20	0	20	0	n	1.00	40	0	40	0	n	1.00	11	0	11	0	n	1.00	27	0	27	0	n	1.00	15	0	15	0	n	1.00	19	0	19	0	n	1.00	30	0	30	0	n	1.00	12	0	12	0	n	1.00	22	0	22	0	n	ENSMUSG00000027259.16	Adal	chr2	protein_coding	adenosine deaminase-like
known_NIR_10276	chr2	120997199	121000291	-	120997199;120999884	120999680;121000291	ES	ENSMUST00000110661.9	known	0.13	2	13.0	2	13;13	y	0.39	6	9.5	6	8;11	y	0.13	5	33.5	5	29;38	y	0.13	2	13.5	2	14;13	y	0.29	10	24.5	10	21;28	y	0.19	3	12.5	3	16;9	y	0.15	3	17.5	3	13;22	y	0.06	1	14.5	1	9;20	n	0.06	1	16.0	1	22;10	n	0.15	3	17.0	3	12;22	y	0.12	2	14.5	2	16;13	y	0.18	3	14.0	3	17;11	y	ENSMUSG00000050619.15	Zscan29	chr2	protein_coding	zinc finger SCAN domains 29
known_NIR_10277	chr2	121001952	121004039	+	121001191	121004039	A5SS	ENSMUST00000144123.8	known	0.92	12	1	12	1	n	1.00	11	0	11	0	n	0.96	22	1	22	1	n	0.89	24	3	24	3	y	0.93	28	2	28	2	y	0.55	6	5	6	5	y	0.88	14	2	14	2	y	1.00	10	0	10	0	n	1.00	13	0	13	0	n	0.86	19	3	19	3	y	0.91	10	1	10	1	n	0.91	20	2	20	2	y	ENSMUSG00000027263.13	Tubgcp4	chr2	protein_coding	tubulin, gamma complex associated protein 4
known_NIR_10278	chr2	121019950	121020305	+	121019950	121020308	A3SS	ENSMUST00000110658.8	known	0.43	9	12	9	12	y	0.40	6	9	6	9	y	0.56	18	14	18	14	y	0.62	13	8	13	8	y	0.30	8	19	8	19	y	0.53	9	8	9	8	y	0.57	16	12	16	12	y	0.47	7	8	7	8	y	0.30	6	14	6	14	y	0.36	8	14	8	14	y	0.55	12	10	12	10	y	0.48	11	12	11	12	y	ENSMUSG00000027263.13	Tubgcp4	chr2	protein_coding	tubulin, gamma complex associated protein 4
known_NIR_10279	chr2	121033233	121034814	-	121033239	121034814	A3SS	ENSMUST00000135890.8	known	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.00	0	17	0	17	n	0.00	0	5	0	5	n	0.07	1	14	1	14	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.26	6	17	6	17	y	ENSMUSG00000043909.17	Trp53bp1	chr2	protein_coding	transformation related protein 53 binding protein 1
known_NIR_10280	chr2	121152273	121158126	-	121152273;121157395	121157333;121158126	ES	ENSMUST00000052029.10	known	0.35	3	5.5	3	5;6	y	0.62	4	2.5	4	2;3	n	0.84	8	1.5	8	2;1	n	0.80	2	0.5	2	1;0	n	0.29	1	2.5	1	2;3	n	0.77	5	1.5	5	2;1	n	0.29	1	2.5	1	4;1	n	0.82	9	2.0	9	3;1	n	0.40	1	1.5	1	1;2	n	0.62	4	2.5	4	2;3	n	1.00	3	0.0	3	0;0	n	-	-	-	-	-	-	ENSMUSG00000033526.17	Ppip5k1	chr2	protein_coding	diphosphoinositol pentakisphosphate kinase 1
known_NIR_10281	chr2	121162129	121164894	-	121162872	121164894	3pMXE	ENSMUST00000134644.8	known	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.60	3	2	3	2	n	0.50	2	2	2	2	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.50	6	6	6	6	y	0.80	4	1	4	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	ENSMUSG00000033526.17	Ppip5k1	chr2	protein_coding	diphosphoinositol pentakisphosphate kinase 1
known_NIR_10282	chr2	121162129;121162872	121162723;121164894	-	121162129	121164894	cassetteExon	ENSMUST00000052029.10	known	1.00	3.5	0	2;5	0	n	1.00	2.0	0	0;4	0	n	0.45	2.5	3	3;2	3	n	0.67	4.0	2	6;2	2	y	1.00	3.5	0	4;3	0	n	0.71	2.5	1	2;3	1	n	0.50	6.0	6	6;6	6	y	0.20	1.0	4	1;1	4	n	1.00	1.0	0	0;2	0	n	1.00	1.5	0	2;1	0	n	0.67	2.0	1	2;2	1	n	1.00	1.0	0	0;2	0	n	ENSMUSG00000033526.17	Ppip5k1	chr2	protein_coding	diphosphoinositol pentakisphosphate kinase 1
known_NIR_10283	chr2	121244686	121255006	+	121244686;121253008	121252930;121255006	ES	ENSMUST00000028683.14	known	0.00	0	825.0	0	798;852	n	0.00	0	768.0	0	706;830	n	0.00	0	2302.0	0	2121;2483	n	0.00	0	1111.5	0	997;1226	n	0.00	0	2147.0	0	1985;2309	n	0.00	0	1417.5	0	1325;1510	n	0.00	3	1232.0	3	1059;1405	y	0.00	0	1589.0	0	1463;1715	n	0.00	0	955.5	0	872;1039	n	0.00	1	1495.5	1	1373;1618	n	0.00	0	959.0	0	875;1043	n	0.00	0	1314.5	0	1146;1483	n	ENSMUSG00000027248.14	Pdia3	chr2	protein_coding	protein disulfide isomerase associated 3
known_NIR_10284	chr2	121255123	121257076	+	121255123	121262133	A3SS	ENSMUST00000135079.2	known	1.00	929	3	929	3	y	1.00	908	0	908	0	n	1.00	2420	5	2420	5	y	1.00	1103	5	1103	5	y	1.00	2194	4	2194	4	y	1.00	1452	0	1452	0	n	1.00	1306	6	1306	6	y	1.00	1653	7	1653	7	y	1.00	1114	5	1114	5	y	1.00	1512	4	1512	4	y	1.00	1076	0	1076	0	n	1.00	1468	4	1468	4	y	ENSMUSG00000027248.14	Pdia3	chr2	protein_coding	protein disulfide isomerase associated 3
known_NIR_10285	chr2	121260064	121262133	+	121255123	121262133	A5SS	ENSMUST00000135079.2	known	1.00	1129	3	1129	3	y	1.00	1140	0	1140	0	n	1.00	2871	5	2871	5	y	1.00	1354	5	1354	5	y	1.00	2686	4	2686	4	y	1.00	1874	0	1874	0	n	1.00	1790	6	1790	6	y	1.00	1961	7	1961	7	y	1.00	1369	5	1369	5	y	1.00	1989	4	1989	4	y	1.00	1364	0	1364	0	n	1.00	1753	4	1753	4	y	ENSMUSG00000027248.14	Pdia3	chr2	protein_coding	protein disulfide isomerase associated 3
known_NIR_10286	chr2	121280564	121281069	+	121280564	121281202	A3SS	ENSMUST00000139253.8	known	0.00	8	1829	8	1829	y	0.00	5	1942	5	1942	y	0.00	10	2053	10	2053	y	0.00	0	1567	0	1567	n	0.00	7	2615	7	2615	y	0.01	9	1469	9	1469	y	0.00	7	2634	7	2634	y	0.00	3	1533	3	1533	y	0.00	0	1481	0	1481	n	0.00	7	2412	7	2412	y	0.00	10	2018	10	2018	y	0.00	8	1803	8	1803	y	ENSMUSG00000074884.13	Serf2	chr2	protein_coding	small EDRK-rich factor 2
known_NIR_10287	chr2	121280564	121281179	+	121280564	121281069	A3SS	ENSMUST00000110615.8	known	0.50	8	8	8	8	y	0.82	23	5	23	5	y	0.76	31	10	31	10	y	1.00	14	0	14	0	n	0.74	20	7	20	7	y	0.68	19	9	19	9	y	0.77	24	7	24	7	y	0.88	22	3	22	3	y	1.00	14	0	14	0	n	0.67	14	7	14	7	y	0.66	19	10	19	10	y	0.67	16	8	16	8	y	ENSMUSG00000074884.13	Serf2	chr2	protein_coding	small EDRK-rich factor 2
known_NIR_10288	chr2	121280564	121281179	+	121280564	121281202	A3SS	ENSMUST00000139253.8	known	0.00	8	1829	8	1829	y	0.01	23	1942	23	1942	y	0.01	31	2053	31	2053	y	0.01	14	1567	14	1567	y	0.01	20	2615	20	2615	y	0.01	19	1469	19	1469	y	0.01	24	2634	24	2634	y	0.01	22	1533	22	1533	y	0.01	14	1481	14	1481	y	0.01	14	2412	14	2412	y	0.01	19	2018	19	2018	y	0.01	16	1803	16	1803	y	ENSMUSG00000074884.13	Serf2	chr2	protein_coding	small EDRK-rich factor 2
known_NIR_10289	chr2	121742522;121756209	121756042;121763959	+	121742522	121763959	cassetteExon	ENSMUST00000110586.10	known	0.55	6.0	5	9;3	5	y	0.71	2.5	1	3;2	1	n	0.50	7.0	7	11;3	7	y	0.76	12.5	4	13;12	4	y	0.56	7.5	6	4;11	6	y	0.78	10.5	3	13;8	3	y	0.62	10.0	6	11;9	6	y	0.70	11.5	5	12;11	5	y	0.71	2.5	1	2;3	1	n	0.64	10.5	6	14;7	6	y	0.88	7.0	1	8;6	1	n	0.53	4.5	4	2;7	4	y	ENSMUSG00000060227.16	Golm2	chr2	protein_coding	golgi membrane protein 2
known_NIR_10290	chr2	122184365	122184512	-	122184365	122184510	A5SS	ENSMUST00000048635.13	known	0.42	16	22	16	22	y	0.24	4	13	4	13	y	0.27	4	11	4	11	y	0.25	6	18	6	18	y	0.37	14	24	14	24	y	0.27	6	16	6	16	y	0.26	9	25	9	25	y	0.21	3	11	3	11	y	0.24	4	13	4	13	y	0.27	11	30	11	30	y	0.41	7	10	7	10	y	0.39	14	22	14	22	y	ENSMUSG00000033256.15	Shf	chr2	protein_coding	Src homology 2 domain containing F
known_NIR_10291	chr2	122184441	122187564	-	122184678	122187564	A3SS&ES	ENSMUST00000048635.13	known	0.00	0	36	0	36	n	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.00	0	24	0	24	n	0.02	1	46	1	46	n	0.00	0	15	0	15	n	0.10	3	28	3	28	y	0.00	0	13	0	13	n	0.11	2	17	2	17	y	0.00	0	38	0	38	n	0.06	1	15	1	15	n	0.00	0	31	0	31	n	ENSMUSG00000033256.15	Shf	chr2	protein_coding	Src homology 2 domain containing F
known_NIR_10292	chr2	122428681	122428808	-	122428681	122430860	A5SS	ENSMUST00000028624.9	known	0.00	0	16	0	16	n	0.00	0	21	0	21	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.20	3	12	3	12	y	0.00	0	2	0	2	n	0.00	0	19	0	19	n	0.00	0	4	0	4	n	0.00	0	20	0	20	n	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	ENSMUSG00000027199.15	Gatm	chr2	protein_coding	glycine amidinotransferase (L-arginine:glycine amidinotransferase)
known_NIR_10293	chr2	122469879	122472614	+	122469879;122471229	122471037;122472614	ES	ENSMUST00000239506.1	known	0.18	3	13.5	3	7;20	y	0.30	9	21.5	9	17;26	y	0.19	5	21.0	5	16;26	y	0.11	2	16.5	2	21;12	y	0.44	7	9.0	7	6;12	y	0.50	5	5.0	5	5;5	y	0.15	3	17.0	3	17;17	y	0.26	4	11.5	4	15;8	y	0.13	2	13.5	2	9;18	y	0.24	6	18.5	6	20;17	y	0.30	6	14.0	6	14;14	y	0.09	2	20.0	2	16;24	y	ENSMUSG00000118663.1	Spata5l1	chr2	protein_coding	--
known_NIR_10294	chr2	122531472	122543950	-	122531472;122536461	122536315;122543950	ES	ENSMUST00000005952.11	known	0.00	0	10.5	0	14;7	n	0.00	0	4.5	0	4;5	n	0.10	3	27.5	3	31;24	y	0.14	2	12.5	2	15;10	y	0.12	3	22.0	3	24;20	y	0.08	1	11.0	1	9;13	n	0.19	2	8.5	2	7;10	y	0.06	1	15.5	1	11;20	n	0.00	0	7.0	0	5;9	n	0.11	1	8.5	1	8;9	n	0.00	0	6.0	0	4;8	n	0.00	0	7.0	0	7;7	n	ENSMUSG00000005802.13	Slc30a4	chr2	protein_coding	solute carrier family 30 (zinc transporter), member 4
known_NIR_10295	chr2	122580624	122580904	+	122580624	122584509	A3SS	ENSMUST00000005954.9	known	0.12	2	15	2	15	y	0.00	0	13	0	13	n	0.00	0	37	0	37	n	0.00	0	26	0	26	n	0.00	0	48	0	48	n	0.00	0	14	0	14	n	0.00	0	30	0	30	n	0.00	0	19	0	19	n	0.00	0	26	0	26	n	0.00	0	27	0	27	n	0.06	2	29	2	29	y	0.00	0	25	0	25	n	ENSMUSG00000005804.15	Bloc1s6	chr2	protein_coding	biogenesis of lysosomal organelles complex-1, subunit 6, pallidin
known_NIR_10296	chr2	122584650	122586050	+	122584650	122586046	A3SS	ENSMUST00000005954.9	known	0.00	0	15	0	15	n	0.05	1	20	1	20	n	0.08	2	22	2	22	y	0.21	8	30	8	30	y	0.16	7	37	7	37	y	0.13	2	13	2	13	y	0.29	12	30	12	30	y	0.08	2	23	2	23	y	0.21	4	15	4	15	y	0.12	6	42	6	42	y	0.06	2	31	2	31	y	0.17	3	15	3	15	y	ENSMUSG00000005804.15	Bloc1s6	chr2	protein_coding	biogenesis of lysosomal organelles complex-1, subunit 6, pallidin
known_NIR_10297	chr2	122607359	122609806	+	122607359	122626864	A3SS	ENSMUST00000005953.11	known	0.00	0	145	0	145	n	0.00	0	116	0	116	n	0.00	0	84	0	84	n	0.01	2	216	2	216	y	0.00	0	150	0	150	n	0.00	0	44	0	44	n	0.00	0	154	0	154	n	0.00	0	60	0	60	n	0.00	0	169	0	169	n	0.00	0	262	0	262	n	0.00	0	163	0	163	n	0.00	0	294	0	294	n	ENSMUSG00000005803.15	Sqor	chr2	protein_coding	sulfide quinone oxidoreductase
known_NIR_10298	chr2	122607592	122626864	+	122607359	122626864	A5SS	ENSMUST00000005953.11	known	0.02	3	145	3	145	y	0.04	5	116	5	116	y	0.06	5	84	5	84	y	0.02	4	216	4	216	y	0.07	12	150	12	150	y	0.04	2	44	2	44	y	0.06	10	154	10	154	y	0.03	2	60	2	60	y	0.06	11	169	11	169	y	0.04	10	262	10	262	y	0.05	8	163	8	163	y	0.05	15	294	15	294	y	ENSMUSG00000005803.15	Sqor	chr2	protein_coding	sulfide quinone oxidoreductase
known_NIR_10299	chr2	122608710	122626864	+	122607592	122626864	A5SS	ENSMUST00000124460.2	known	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.33	2	4	2	4	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.23	3	10	3	10	y	0.00	0	2	0	2	n	0.31	5	11	5	11	y	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	15	0	15	n	ENSMUSG00000005803.15	Sqor	chr2	protein_coding	sulfide quinone oxidoreductase
known_NIR_10300	chr2	122624318	122626864	+	122607359	122626864	A5SS	ENSMUST00000005953.11	known	0.01	2	145	2	145	y	0.00	0	116	0	116	n	0.00	0	84	0	84	n	0.00	0	216	0	216	n	0.00	0	150	0	150	n	0.00	0	44	0	44	n	0.01	1	154	1	154	n	0.00	0	60	0	60	n	0.01	2	169	2	169	y	0.00	0	262	0	262	n	0.00	0	163	0	163	n	0.00	1	294	1	294	n	ENSMUSG00000005803.15	Sqor	chr2	protein_coding	sulfide quinone oxidoreductase
known_NIR_10301	chr2	122624318	122626864	+	122607592	122626864	A5SS	ENSMUST00000124460.2	known	0.40	2	3	2	3	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.09	1	10	1	10	n	0.00	0	2	0	2	n	0.15	2	11	2	11	y	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.06	1	15	1	15	n	ENSMUSG00000005803.15	Sqor	chr2	protein_coding	sulfide quinone oxidoreductase
known_NIR_10302	chr2	122629548	122629894	+	122629548	122634270	A3SS	ENSMUST00000005953.11	known	0.00	0	436	0	436	n	0.00	0	322	0	322	n	0.00	0	228	0	228	n	0.00	0	532	0	532	n	0.00	0	380	0	380	n	0.00	0	92	0	92	n	0.00	0	451	0	451	n	0.00	0	151	0	151	n	0.00	0	431	0	431	n	0.00	0	712	0	712	n	0.00	0	469	0	469	n	0.00	2	794	2	794	y	ENSMUSG00000005803.15	Sqor	chr2	protein_coding	sulfide quinone oxidoreductase
known_NIR_10303	chr2	122649560	122651201	+	122649560;122650052	122649874;122651201	ES	ENSMUST00000005953.11	known	0.00	0	527.0	0	470;584	n	0.00	1	591.0	1	457;725	n	0.00	0	306.5	0	276;337	n	0.00	0	548.0	0	483;613	n	0.00	0	470.0	0	430;510	n	0.00	0	103.0	0	96;110	n	0.00	0	557.5	0	518;597	n	0.00	0	198.5	0	171;226	n	0.00	2	507.5	2	458;557	y	0.00	1	804.5	1	694;915	n	0.00	1	726.5	1	601;852	n	0.00	0	923.5	0	799;1048	n	ENSMUSG00000005803.15	Sqor	chr2	protein_coding	sulfide quinone oxidoreductase
known_NIR_10304	chr2	12353014	12354518	-	12353014	12360088	A5SS	ENSMUST00000144645.8	known	0.20	2	8	2	8	y	0.17	1	5	1	5	n	0.00	0	6	0	6	n	0.12	1	7	1	7	n	0.00	0	9	0	9	n	0.17	1	5	1	5	n	0.00	0	6	0	6	n	0.57	4	3	4	3	n	0.40	2	3	2	3	n	0.12	1	7	1	7	n	0.20	3	12	3	12	y	0.00	0	5	0	5	n	ENSMUSG00000026767.13	Mindy3	chr2	protein_coding	MINDY lysine 48 deubiquitinase 3
known_NIR_10305	chr2	12353014	12360088	-	12353014;12355811	12355740;12360088	ES	ENSMUST00000155530.8	known	0.07	8	101.0	8	105;97	y	0.06	5	78.5	5	75;82	y	0.09	6	61.0	6	60;62	y	0.06	7	103.5	7	98;109	y	0.08	9	100.5	9	79;122	y	0.14	5	30.5	5	30;31	y	0.06	6	97.0	6	95;99	y	0.05	3	53.5	3	55;52	y	0.03	3	84.0	3	79;89	y	0.05	7	143.0	7	134;152	y	0.12	12	89.5	12	84;95	y	0.04	5	113.5	5	106;121	y	ENSMUSG00000026767.13	Mindy3	chr2	protein_coding	MINDY lysine 48 deubiquitinase 3
known_NIR_10306	chr2	12353014	12360088	-	12355811	12360088	3pMXE	ENSMUST00000124603.8	known	0.08	8	97	8	97	y	0.06	5	82	5	82	y	0.09	6	62	6	62	y	0.06	7	109	7	109	y	0.07	9	122	9	122	y	0.14	5	31	5	31	y	0.06	6	99	6	99	y	0.05	3	52	3	52	y	0.03	3	89	3	89	y	0.04	7	152	7	152	y	0.11	12	95	12	95	y	0.04	5	121	5	121	y	ENSMUSG00000026767.13	Mindy3	chr2	protein_coding	MINDY lysine 48 deubiquitinase 3
known_NIR_10307	chr2	12353014;12354653	12354518;12355740	-	12353014	12355740	cassetteExon	ENSMUST00000155530.8	known	0.01	1.0	105	2;0	105	n	0.01	1.0	75	1;1	75	n	0.02	1.0	60	0;2	60	n	0.03	3.5	98	1;6	98	n	0.00	0.0	79	0;0	79	n	0.02	0.5	30	1;0	30	n	0.00	0.0	95	0;0	95	n	0.04	2.0	55	4;0	55	n	0.02	1.5	79	2;1	79	n	0.01	1.0	134	1;1	134	n	0.03	2.5	84	3;2	84	y	0.00	0.0	106	0;0	106	n	ENSMUSG00000026767.13	Mindy3	chr2	protein_coding	MINDY lysine 48 deubiquitinase 3
known_NIR_10308	chr2	12391490	12400990	-	12391490	12423970	A5SS	ENSMUST00000129993.3	known	0.96	77	3	77	3	y	0.97	73	2	73	2	y	0.92	58	5	58	5	y	0.99	94	1	94	1	n	0.99	94	1	94	1	n	0.97	38	1	38	1	n	0.96	87	4	87	4	y	0.96	48	2	48	2	y	0.99	88	1	88	1	n	0.99	115	1	115	1	n	0.96	82	3	82	3	y	0.98	118	2	118	2	y	ENSMUSG00000026767.13	Mindy3	chr2	protein_coding	MINDY lysine 48 deubiquitinase 3
known_NIR_10309	chr2	12391490	12410671	-	12391490	12400990	A5SS&ES	ENSMUST00000194533.6	known	0.01	1	77	1	77	n	0.01	1	73	1	73	n	0.05	3	58	3	58	y	0.01	1	94	1	94	n	0.02	2	94	2	94	y	0.00	0	38	0	38	n	0.03	3	87	3	87	y	0.04	2	48	2	48	y	0.00	0	88	0	88	n	0.03	4	115	4	115	y	0.00	0	82	0	82	n	0.02	2	118	2	118	y	ENSMUSG00000026767.13	Mindy3	chr2	protein_coding	MINDY lysine 48 deubiquitinase 3
known_NIR_10310	chr2	12402377	12404834	-	12402377	12423970	A5SS	ENSMUST00000194533.6	known	1.00	90	0	90	0	n	1.00	50	0	50	0	n	1.00	64	0	64	0	n	1.00	96	0	96	0	n	1.00	94	0	94	0	n	1.00	15	0	15	0	n	1.00	85	0	85	0	n	1.00	56	0	56	0	n	1.00	71	0	71	0	n	1.00	111	0	111	0	n	0.99	72	1	72	1	n	0.98	106	2	106	2	y	ENSMUSG00000026767.13	Mindy3	chr2	protein_coding	MINDY lysine 48 deubiquitinase 3
known_NIR_10311	chr2	12402377;12404948	12404834;12410671	-	12402377	12410671	cassetteExon	ENSMUST00000154899.7	known	1.00	45.0	0	90;0	0	n	1.00	25.0	0	50;0	0	n	1.00	32.0	0	64;0	0	n	0.94	50.0	3	96;4	3	y	0.96	48.5	2	94;3	2	y	0.88	7.5	1	15;0	1	n	0.98	44.5	1	85;4	1	n	0.93	28.5	2	56;1	2	n	1.00	36.5	0	71;2	0	n	0.95	56.5	3	111;2	3	y	1.00	37.5	0	72;3	0	n	0.92	55.0	5	106;4	5	y	ENSMUSG00000026767.13	Mindy3	chr2	protein_coding	MINDY lysine 48 deubiquitinase 3
known_NIR_10312	chr2	12404948	12408809	-	12405887	12408809	3pMXE	ENSMUST00000124515.2	known	0.01	1	67	1	67	n	0.03	1	33	1	33	n	0.00	0	52	0	52	n	0.03	3	103	3	103	y	0.01	1	102	1	102	n	0.00	0	27	0	27	n	0.03	2	65	2	65	y	0.00	0	38	0	38	n	0.00	0	78	0	78	n	0.04	3	77	3	77	y	0.02	1	64	1	64	n	0.03	3	97	3	97	y	ENSMUSG00000026767.13	Mindy3	chr2	protein_coding	MINDY lysine 48 deubiquitinase 3
known_NIR_10313	chr2	12404948	12410671	-	12404948;12408979	12408809;12410671	ES	ENSMUST00000155530.8	known	0.00	0	26.5	0	1;52	n	0.00	0	21.0	0	1;41	n	0.00	0	29.0	0	0;58	n	0.10	4	38.0	4	3;73	y	0.10	3	28.0	3	1;55	n	0.00	0	10.5	0	0;21	n	0.10	4	37.5	4	2;73	y	0.05	1	18.0	1	0;36	n	0.06	2	33.0	2	0;66	n	0.04	2	44.5	2	3;86	y	0.13	3	20.0	3	1;39	n	0.09	4	39.0	4	3;75	y	ENSMUSG00000026767.13	Mindy3	chr2	protein_coding	MINDY lysine 48 deubiquitinase 3
known_NIR_10314	chr2	12404948;12405887	12405836;12408809	-	12404948	12408809	cassetteExon	ENSMUST00000155530.8	known	0.99	73.5	1	80;67	1	n	0.98	39.5	1	46;33	1	n	1.00	58.0	0	64;52	0	n	0.97	94.0	3	85;103	3	y	0.99	109.0	1	116;102	1	n	1.00	21.5	0	16;27	0	n	0.97	72.5	2	80;65	2	y	1.00	39.0	0	40;38	0	n	1.00	78.0	0	78;78	0	n	0.97	87.5	3	98;77	3	y	0.98	63.0	1	62;64	1	n	0.97	100.0	3	103;97	3	y	ENSMUSG00000026767.13	Mindy3	chr2	protein_coding	MINDY lysine 48 deubiquitinase 3
known_NIR_10315	chr2	12404948;12405887	12405836;12410671	-	12404948	12410671	cassetteExon	ENSMUST00000144645.8	known	1.00	42.0	0	80;4	0	n	1.00	24.0	0	46;2	0	n	1.00	34.0	0	64;4	0	n	0.92	48.0	4	85;11	4	y	0.95	61.5	3	116;7	3	y	1.00	9.0	0	16;2	0	n	0.91	41.5	4	80;3	4	y	0.95	20.5	1	40;1	1	n	0.95	41.5	2	78;5	2	y	0.96	54.5	2	98;11	2	y	0.92	33.0	3	62;4	3	y	0.93	54.5	4	103;6	4	y	ENSMUSG00000026767.13	Mindy3	chr2	protein_coding	MINDY lysine 48 deubiquitinase 3
known_NIR_10316	chr2	12404948;12405887	12405836;12410671	-	12404948;12408979	12408809;12410671	MXE	ENSMUST00000155530.8	known	0.61	42.0	26.5	80;4	1;52	n	0.53	24.0	21.0	46;2	1;41	n	0.54	34.0	29.0	64;4	0;58	n	0.56	48.0	38.0	85;11	3;73	y	0.69	61.5	28.0	116;7	1;55	n	0.46	9.0	10.5	16;2	0;21	n	0.53	41.5	37.5	80;3	2;73	y	0.53	20.5	18.0	40;1	0;36	n	0.56	41.5	33.0	78;5	0;66	n	0.55	54.5	44.5	98;11	3;86	y	0.62	33.0	20.0	62;4	1;39	n	0.58	54.5	39.0	103;6	3;75	y	ENSMUSG00000026767.13	Mindy3	chr2	protein_coding	MINDY lysine 48 deubiquitinase 3
known_NIR_10317	chr2	12404948;12408977	12408809;12410671	-	12404948	12410671	cassetteExon	ENSMUST00000144645.8	known	1.00	2.0	0	1;3	0	n	1.00	3.5	0	1;6	0	n	-	-	-	-	-	-	0.47	3.5	4	3;4	4	y	0.54	3.5	3	1;6	3	n	-	-	-	-	-	-	0.33	2.0	4	2;2	4	n	0.00	0.0	1	0;0	1	n	0.75	6.0	2	0;12	2	n	0.75	6.0	2	3;9	2	y	0.45	2.5	3	1;4	3	n	0.53	4.5	4	3;6	4	y	ENSMUSG00000026767.13	Mindy3	chr2	protein_coding	MINDY lysine 48 deubiquitinase 3
known_NIR_10318	chr2	12404948;12408977	12408809;12410671	-	12404948;12405887	12405836;12410671	MXE	ENSMUST00000129348.2	known	0.05	2.0	42.0	1;3	80;4	n	0.13	3.5	24.0	1;6	46;2	n	0.00	0.0	34.0	0;0	64;4	n	0.07	3.5	48.0	3;4	85;11	y	0.05	3.5	61.5	1;6	116;7	n	0.00	0.0	9.0	0;0	16;2	n	0.05	2.0	41.5	2;2	80;3	y	0.00	0.0	20.5	0;0	40;1	n	0.13	6.0	41.5	0;12	78;5	n	0.10	6.0	54.5	3;9	98;11	y	0.07	2.5	33.0	1;4	62;4	n	0.08	4.5	54.5	3;6	103;6	y	ENSMUSG00000026767.13	Mindy3	chr2	protein_coding	MINDY lysine 48 deubiquitinase 3
known_NIR_10319	chr2	12405887	12410671	-	12391490	12410671	A3SS	ENSMUST00000124603.8	known	0.80	4	1	4	1	n	0.67	2	1	2	1	n	0.57	4	3	4	3	n	0.92	11	1	11	1	n	0.78	7	2	7	2	n	1.00	2	0	2	0	n	0.50	3	3	3	3	n	0.33	1	2	1	2	n	1.00	5	0	5	0	n	0.73	11	4	11	4	y	1.00	4	0	4	0	n	0.75	6	2	6	2	n	ENSMUSG00000026767.13	Mindy3	chr2	protein_coding	MINDY lysine 48 deubiquitinase 3
known_NIR_10320	chr2	12405887	12410671	-	12402377	12410671	A3SS	ENSMUST00000154899.7	known	1.00	4	0	4	0	n	1.00	2	0	2	0	n	1.00	4	0	4	0	n	0.79	11	3	11	3	y	0.78	7	2	7	2	n	0.67	2	1	2	1	n	0.75	3	1	3	1	n	0.33	1	2	1	2	n	1.00	5	0	5	0	n	0.79	11	3	11	3	y	1.00	4	0	4	0	n	0.55	6	5	6	5	y	ENSMUSG00000026767.13	Mindy3	chr2	protein_coding	MINDY lysine 48 deubiquitinase 3
known_NIR_10321	chr2	12405887	12410671	-	12405887	12408809	A5SS&ES	ENSMUST00000124515.2	known	0.06	4	67	4	67	y	0.06	2	33	2	33	y	0.07	4	52	4	52	y	0.10	11	103	11	103	y	0.06	7	102	7	102	y	0.07	2	27	2	27	y	0.04	3	65	3	65	y	0.03	1	38	1	38	n	0.06	5	78	5	78	y	0.12	11	77	11	77	y	0.06	4	64	4	64	y	0.06	6	97	6	97	y	ENSMUSG00000026767.13	Mindy3	chr2	protein_coding	MINDY lysine 48 deubiquitinase 3
known_NIR_10322	chr2	12405887	12410671	-	12405887;12408977	12408809;12410671	ES	ENSMUST00000129489.8	known	0.10	4	35.0	4	67;3	y	0.09	2	19.5	2	33;6	y	0.13	4	26.0	4	52;0	n	0.17	11	53.5	11	103;4	y	0.11	7	54.0	7	102;6	y	0.13	2	13.5	2	27;0	n	0.08	3	33.5	3	65;2	y	0.05	1	19.0	1	38;0	n	0.10	5	45.0	5	78;12	y	0.20	11	43.0	11	77;9	y	0.11	4	34.0	4	64;4	y	0.10	6	51.5	6	97;6	y	ENSMUSG00000026767.13	Mindy3	chr2	protein_coding	MINDY lysine 48 deubiquitinase 3
known_NIR_10323	chr2	12405887	12410671	-	12405887;12408979	12408809;12410671	ES	ENSMUST00000028105.13	known	0.06	4	59.5	4	67;52	y	0.05	2	37.0	2	33;41	y	0.07	4	55.0	4	52;58	y	0.11	11	88.0	11	103;73	y	0.08	7	78.5	7	102;55	y	0.08	2	24.0	2	27;21	y	0.04	3	69.0	3	65;73	y	0.03	1	37.0	1	38;36	n	0.06	5	72.0	5	78;66	y	0.12	11	81.5	11	77;86	y	0.07	4	51.5	4	64;39	y	0.07	6	86.0	6	97;75	y	ENSMUSG00000026767.13	Mindy3	chr2	protein_coding	MINDY lysine 48 deubiquitinase 3
known_NIR_10324	chr2	12408977	12410671	-	12391490	12410671	A3SS	ENSMUST00000124603.8	known	0.75	3	1	3	1	n	0.86	6	1	6	1	n	0.00	0	3	0	3	n	0.80	4	1	4	1	n	0.75	6	2	6	2	n	-	-	-	-	-	-	0.40	2	3	2	3	n	0.00	0	2	0	2	n	1.00	12	0	12	0	n	0.69	9	4	9	4	y	1.00	4	0	4	0	n	0.75	6	2	6	2	n	ENSMUSG00000026767.13	Mindy3	chr2	protein_coding	MINDY lysine 48 deubiquitinase 3
known_NIR_10325	chr2	12408977	12410671	-	12402377	12410671	A3SS	ENSMUST00000154899.7	known	1.00	3	0	3	0	n	1.00	6	0	6	0	n	-	-	-	-	-	-	0.57	4	3	4	3	n	0.75	6	2	6	2	n	0.00	0	1	0	1	n	0.67	2	1	2	1	n	0.00	0	2	0	2	n	1.00	12	0	12	0	n	0.75	9	3	9	3	y	1.00	4	0	4	0	n	0.55	6	5	6	5	y	ENSMUSG00000026767.13	Mindy3	chr2	protein_coding	MINDY lysine 48 deubiquitinase 3
known_NIR_10326	chr2	12408977	12410671	-	12408979	12410671	A3SS	ENSMUST00000155530.8	known	0.05	3	52	3	52	y	0.13	6	41	6	41	y	0.00	0	58	0	58	n	0.05	4	73	4	73	y	0.10	6	55	6	55	y	0.00	0	21	0	21	n	0.03	2	73	2	73	y	0.00	0	36	0	36	n	0.15	12	66	12	66	y	0.09	9	86	9	86	y	0.09	4	39	4	39	y	0.07	6	75	6	75	y	ENSMUSG00000026767.13	Mindy3	chr2	protein_coding	MINDY lysine 48 deubiquitinase 3
known_NIR_10327	chr2	12408979	12410671	-	12391490	12410671	A3SS	ENSMUST00000124603.8	known	0.98	52	1	52	1	n	0.98	41	1	41	1	n	0.95	58	3	58	3	y	0.99	73	1	73	1	n	0.96	55	2	55	2	y	1.00	21	0	21	0	n	0.96	73	3	73	3	y	0.95	36	2	36	2	y	1.00	66	0	66	0	n	0.96	86	4	86	4	y	1.00	39	0	39	0	n	0.97	75	2	75	2	y	ENSMUSG00000026767.13	Mindy3	chr2	protein_coding	MINDY lysine 48 deubiquitinase 3
known_NIR_10328	chr2	12408979	12410671	-	12402377	12410671	A3SS	ENSMUST00000154899.7	known	1.00	52	0	52	0	n	1.00	41	0	41	0	n	1.00	58	0	58	0	n	0.96	73	3	73	3	y	0.96	55	2	55	2	y	0.95	21	1	21	1	n	0.99	73	1	73	1	n	0.95	36	2	36	2	y	1.00	66	0	66	0	n	0.97	86	3	86	3	y	1.00	39	0	39	0	n	0.94	75	5	75	5	y	ENSMUSG00000026767.13	Mindy3	chr2	protein_coding	MINDY lysine 48 deubiquitinase 3
known_NIR_10329	chr2	12408979	12410671	-	12408979	12423970	A5SS	ENSMUST00000124515.2	known	1.00	52	0	52	0	n	1.00	41	0	41	0	n	0.97	58	2	58	2	y	1.00	73	0	73	0	n	1.00	55	0	55	0	n	1.00	21	0	21	0	n	1.00	73	0	73	0	n	1.00	36	0	36	0	n	1.00	66	0	66	0	n	1.00	86	0	86	0	n	1.00	39	0	39	0	n	1.00	75	0	75	0	n	ENSMUSG00000026767.13	Mindy3	chr2	protein_coding	MINDY lysine 48 deubiquitinase 3
known_NIR_10330	chr2	12408979	12423970	-	12414891	12423970	A3SS&ES	ENSMUST00000129489.8	known	0.00	0	54	0	54	n	0.00	0	48	0	48	n	0.04	2	52	2	52	y	0.00	0	62	0	62	n	0.00	0	49	0	49	n	0.00	0	32	0	32	n	0.00	0	44	0	44	n	0.00	0	38	0	38	n	0.00	0	46	0	46	n	0.00	0	72	0	72	n	0.00	0	29	0	29	n	0.00	0	84	0	84	n	ENSMUSG00000026767.13	Mindy3	chr2	protein_coding	MINDY lysine 48 deubiquitinase 3
known_NIR_10331	chr2	12414891	12423970	-	12391490	12423970	A3SS	ENSMUST00000129993.3	known	0.95	54	3	54	3	y	0.96	48	2	48	2	y	0.91	52	5	52	5	y	0.98	62	1	62	1	n	0.98	49	1	49	1	n	0.97	32	1	32	1	n	0.92	44	4	44	4	y	0.95	38	2	38	2	y	0.98	46	1	46	1	n	0.99	72	1	72	1	n	0.91	29	3	29	3	y	0.98	84	2	84	2	y	ENSMUSG00000026767.13	Mindy3	chr2	protein_coding	MINDY lysine 48 deubiquitinase 3
known_NIR_10332	chr2	12414891	12423970	-	12402377	12423970	A3SS	ENSMUST00000194533.6	known	1.00	54	0	54	0	n	1.00	48	0	48	0	n	1.00	52	0	52	0	n	1.00	62	0	62	0	n	1.00	49	0	49	0	n	1.00	32	0	32	0	n	1.00	44	0	44	0	n	1.00	38	0	38	0	n	1.00	46	0	46	0	n	1.00	72	0	72	0	n	0.97	29	1	29	1	n	0.98	84	2	84	2	y	ENSMUSG00000026767.13	Mindy3	chr2	protein_coding	MINDY lysine 48 deubiquitinase 3
known_NIR_10333	chr2	124501804	124502164	+	124501804	124502203	A3SS	ENSMUST00000103241.8	known	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.17	2	10	2	10	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000027200.18	Sema6d	chr2	protein_coding	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
known_NIR_10334	chr2	124502264;124502681	124502625;124504124	+	124502264	124504124	cassetteExon	ENSMUST00000077847.12	known	1.00	3.5	0	3;4	0	n	0.00	0.0	2	0;0	2	n	0.29	2.0	5	2;2	5	n	0.50	4.0	4	4;4	4	y	0.33	0.5	1	1;0	1	n	1.00	1.5	0	1;2	0	n	1.00	1.0	0	2;0	0	n	0.00	0.0	1	0;0	1	n	0.60	1.5	1	2;1	1	n	0.50	2.0	2	2;2	2	n	0.50	2.0	2	2;2	2	n	0.60	1.5	1	2;1	1	n	ENSMUSG00000027200.18	Sema6d	chr2	protein_coding	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
known_NIR_10335	chr2	124938040	124939897	-	124938040;124939554	124939483;124939897	ES	ENSMUST00000110501.8	known	0.71	11	4.5	11	4;5	y	0.71	15	6.0	15	6;6	y	0.82	48	10.5	48	11;10	y	0.56	12	9.5	12	12;7	y	0.77	23	7.0	23	7;7	y	0.72	13	5.0	13	3;7	y	0.58	21	15.5	21	15;16	y	0.41	7	10.0	7	7;13	y	0.59	13	9.0	13	10;8	y	0.74	20	7.0	20	10;4	y	0.74	16	5.5	16	8;3	y	0.58	15	11.0	15	7;15	y	ENSMUSG00000027201.17	Myef2	chr2	protein_coding	myelin basic protein expression factor 2, repressor
known_NIR_10336	chr2	124940438;124940767	124940717;124942239	-	124940438	124942239	cassetteExon	ENSMUST00000110501.8	known	0.20	2.0	8	2;2	8	y	0.14	1.0	6	2;0	6	n	0.46	12.0	14	15;9	14	y	0.29	2.5	6	3;2	6	y	0.30	6.0	14	7;5	14	y	0.11	0.5	4	1;0	4	n	0.20	3.0	12	4;2	12	y	0.22	2.0	7	3;1	7	n	0.25	4.0	12	5;3	12	y	0.26	5.5	16	7;4	16	y	0.08	1.0	12	0;2	12	n	0.25	2.0	6	0;4	6	n	ENSMUSG00000027201.17	Myef2	chr2	protein_coding	myelin basic protein expression factor 2, repressor
known_NIR_10337	chr2	125684631	125686730	-	125684652	125686730	A3SS	ENSMUST00000110463.8	known	0.71	75	31	75	31	y	0.54	34	29	34	29	y	0.66	117	59	117	59	y	0.69	95	42	95	42	y	0.59	89	62	89	62	y	0.75	51	17	51	17	y	0.63	103	60	103	60	y	0.63	66	38	66	38	y	0.54	61	51	61	51	y	0.63	102	59	102	59	y	0.49	52	55	52	55	y	0.57	76	58	76	58	y	ENSMUSG00000027206.14	Cops2	chr2	protein_coding	COP9 signalosome subunit 2
known_NIR_10338	chr2	125684679	125686730	-	125684631	125686730	A3SS	ENSMUST00000028635.6	known	0.00	0	75	0	75	n	0.03	1	34	1	34	n	0.00	0	117	0	117	n	0.02	2	95	2	95	y	0.02	2	89	2	89	y	0.00	0	51	0	51	n	0.04	4	103	4	103	y	0.01	1	66	1	66	n	0.05	3	61	3	61	y	0.03	3	102	3	102	y	0.04	2	52	2	52	y	0.04	3	76	3	76	y	ENSMUSG00000027206.14	Cops2	chr2	protein_coding	COP9 signalosome subunit 2
known_NIR_10339	chr2	125684679	125686730	-	125684652	125686730	A3SS	ENSMUST00000110463.8	known	0.00	0	31	0	31	n	0.03	1	29	1	29	n	0.00	0	59	0	59	n	0.05	2	42	2	42	y	0.03	2	62	2	62	y	0.00	0	17	0	17	n	0.06	4	60	4	60	y	0.03	1	38	1	38	n	0.06	3	51	3	51	y	0.05	3	59	3	59	y	0.04	2	55	2	55	y	0.05	3	58	3	58	y	ENSMUSG00000027206.14	Cops2	chr2	protein_coding	COP9 signalosome subunit 2
known_NIR_10340	chr2	125708305	125720198	+	125701297	125720198	A5SS	ENSMUST00000028636.13	known	0.96	22	1	22	1	n	1.00	21	0	21	0	n	0.89	25	3	25	3	y	0.89	16	2	16	2	y	1.00	38	0	38	0	n	1.00	28	0	28	0	n	0.93	25	2	25	2	y	0.93	13	1	13	1	n	1.00	18	0	18	0	n	0.89	47	6	47	6	y	0.97	31	1	31	1	n	1.00	21	0	21	0	n	ENSMUSG00000027207.16	Galk2	chr2	protein_coding	galactokinase 2
known_NIR_10341	chr2	125708305	125720198	+	125708288	125720198	A5SS	ENSMUST00000134337.8	known	0.96	22	1	22	1	n	1.00	21	0	21	0	n	0.96	25	1	25	1	n	0.94	16	1	16	1	n	0.93	38	3	38	3	y	0.97	28	1	28	1	n	0.93	25	2	25	2	y	1.00	13	0	13	0	n	1.00	18	0	18	0	n	0.94	47	3	47	3	y	1.00	31	0	31	0	n	0.84	21	4	21	4	y	ENSMUSG00000027207.16	Galk2	chr2	protein_coding	galactokinase 2
known_NIR_10342	chr2	125708305	125720198	+	125712381	125720198	A5SS&ES	ENSMUST00000125084.8	known	1.00	22	0	22	0	n	1.00	21	0	21	0	n	1.00	25	0	25	0	n	1.00	16	0	16	0	n	1.00	38	0	38	0	n	1.00	28	0	28	0	n	0.86	25	4	25	4	y	1.00	13	0	13	0	n	1.00	18	0	18	0	n	1.00	47	0	47	0	n	1.00	31	0	31	0	n	1.00	21	0	21	0	n	ENSMUSG00000027207.16	Galk2	chr2	protein_coding	galactokinase 2
known_NIR_10343	chr2	125720286	125729763	+	125720286	125729784	A3SS	ENSMUST00000028636.13	known	0.03	1	37	1	37	n	0.00	0	24	0	24	n	0.00	0	49	0	49	n	0.03	1	35	1	35	n	0.00	0	46	0	46	n	0.00	0	29	0	29	n	0.00	0	38	0	38	n	0.06	1	17	1	17	n	0.04	1	24	1	24	n	0.00	0	69	0	69	n	0.06	2	31	2	31	y	0.00	0	36	0	36	n	ENSMUSG00000027207.16	Galk2	chr2	protein_coding	galactokinase 2
known_NIR_10344	chr2	126398138	126403457	+	126395552	126403457	A5SS	ENSMUST00000061491.14	known	0.00	0	1511	0	1511	n	0.00	0	1421	0	1421	n	0.00	0	930	0	930	n	0.00	0	2579	0	2579	n	0.00	0	2555	0	2555	n	0.00	0	520	0	520	n	0.00	0	2663	0	2663	n	0.00	0	924	0	924	n	0.00	2	1483	2	1483	y	0.00	0	2639	0	2639	n	0.00	4	1680	4	1680	y	0.00	0	1873	0	1873	n	ENSMUSG00000027359.17	Slc27a2	chr2	protein_coding	solute carrier family 27 (fatty acid transporter), member 2
known_NIR_10345	chr2	126488665	126491988	-	126488668	126491988	A3SS	ENSMUST00000110425.9	known	0.05	1	18	1	18	n	0.00	0	16	0	16	n	0.10	3	27	3	27	y	0.11	3	24	3	24	y	0.00	0	25	0	25	n	0.29	4	10	4	10	y	0.07	1	14	1	14	n	0.00	0	10	0	10	n	0.19	3	13	3	13	y	0.00	0	24	0	24	n	0.18	3	14	3	14	y	0.26	5	14	5	14	y	ENSMUSG00000027361.16	Gabpb1	chr2	protein_coding	GA repeat binding protein, beta 1
known_NIR_10346	chr2	126500497	126517276	-	126500497	126504911	A5SS&ES	ENSMUST00000039978.13	known	0.50	5	5	5	5	y	0.62	5	3	5	3	n	0.54	7	6	7	6	y	0.58	7	5	7	5	y	0.59	10	7	10	7	y	1.00	6	0	6	0	n	0.67	6	3	6	3	n	0.80	8	2	8	2	y	0.92	11	1	11	1	n	0.78	14	4	14	4	y	0.75	6	2	6	2	n	0.81	13	3	13	3	y	ENSMUSG00000027361.16	Gabpb1	chr2	protein_coding	GA repeat binding protein, beta 1
known_NIR_10347	chr2	126500497;126505008	126504911;126517276	-	126500497	126517276	cassetteExon	ENSMUST00000110425.9	known	0.33	2.5	5	5;0	5	n	0.29	2.0	5	3;1	5	n	0.30	3.0	7	6;0	7	n	0.26	2.5	7	5;0	7	n	0.26	3.5	10	7;0	10	n	0.00	0.0	6	0;0	6	n	0.20	1.5	6	3;0	6	n	0.20	2.0	8	2;2	8	y	0.04	0.5	11	1;0	11	n	0.20	3.5	14	4;3	14	y	0.14	1.0	6	2;0	6	n	0.16	2.5	13	3;2	13	y	ENSMUSG00000027361.16	Gabpb1	chr2	protein_coding	GA repeat binding protein, beta 1
known_NIR_10348	chr2	126647004	126649209	-	126647007	126649209	A3SS	ENSMUST00000103224.10	known	0.15	8	44	8	44	y	0.28	5	13	5	13	y	0.19	13	56	13	56	y	0.28	18	47	18	47	y	0.28	23	60	23	60	y	0.06	2	31	2	31	y	0.25	13	38	13	38	y	0.31	9	20	9	20	y	0.15	6	35	6	35	y	0.21	11	42	11	42	y	0.21	7	27	7	27	y	0.20	13	51	13	51	y	ENSMUSG00000027365.15	Trpm7	chr2	protein_coding	transient receptor potential cation channel, subfamily M, member 7
known_NIR_10349	chr2	126754665;126755273	126755220;126755452	-	126754665	126755452	cassetteExon	ENSMUST00000028844.11	known	0.39	84.0	132	86;82	132	y	0.40	73.5	110	74;73	110	y	0.31	146.0	326	140;152	326	y	0.40	97.0	143	98;96	143	y	0.38	158.5	259	157;160	259	y	0.34	103.5	204	103;104	204	y	0.39	110.0	175	104;116	175	y	0.37	97.5	165	91;104	165	y	0.38	69.5	112	69;70	112	y	0.36	99.5	174	96;103	174	y	0.36	64.5	113	66;63	113	y	0.43	136.0	182	140;132	182	y	ENSMUSG00000027366.13	Sppl2a	chr2	protein_coding	signal peptide peptidase like 2A
known_NIR_10350	chr2	126922298	126922450	+	126912650	126922450	A5SS	ENSMUST00000142861.2	known	0.00	0	10	0	10	n	0.08	1	11	1	11	n	0.08	1	12	1	12	n	0.00	0	22	0	22	n	0.19	5	22	5	22	y	0.00	0	10	0	10	n	0.07	2	28	2	28	y	0.17	1	5	1	5	n	0.12	2	14	2	14	y	0.00	0	24	0	24	n	0.00	0	14	0	14	n	0.17	4	19	4	19	y	ENSMUSG00000001999.16	Blvra	chr2	protein_coding	biliverdin reductase A
known_NIR_10351	chr2	127090004	127097925	+	127090004;127090729	127090412;127097925	ES	ENSMUST00000035871.15	known	0.00	0	25.0	0	18;32	n	0.00	0	26.0	0	16;36	n	0.03	1	37.0	1	22;52	n	0.00	0	34.0	0	24;44	n	0.00	0	41.5	0	30;53	n	0.00	0	23.5	0	16;31	n	0.00	0	34.5	0	28;41	n	0.06	2	29.5	2	20;39	y	0.00	0	26.5	0	16;37	n	0.00	0	42.0	0	33;51	n	0.00	0	20.0	0	13;27	n	0.00	0	44.0	0	27;61	n	ENSMUSG00000034850.16	Tmem127	chr2	protein_coding	transmembrane protein 127
known_NIR_10352	chr2	127280489;127282522	127282306;127286337	-	127280489	127286337	cassetteExon	ENSMUST00000137366.8	known	1.00	28.5	0	57;0	0	n	1.00	33.5	0	67;0	0	n	1.00	18.0	0	35;1	0	n	0.97	33.0	1	66;0	1	n	1.00	41.5	0	80;3	0	n	0.87	20.5	3	40;1	3	n	1.00	47.0	0	91;3	0	n	0.89	17.0	2	34;0	2	n	0.97	39.0	1	75;3	1	n	0.96	54.5	2	107;2	2	y	0.96	47.0	2	91;3	2	y	1.00	35.5	0	68;3	0	n	ENSMUSG00000027371.11	Fahd2a	chr2	protein_coding	fumarylacetoacetate hydrolase domain containing 2A
known_NIR_10353	chr2	127282418	127283794	-	127282522	127283794	A3SS	ENSMUST00000028848.4	known	0.00	0	80	0	80	n	0.00	0	59	0	59	n	0.00	0	23	0	23	n	0.00	0	40	0	40	n	0.00	0	85	0	85	n	0.06	1	16	1	16	n	0.00	0	79	0	79	n	0.00	0	18	0	18	n	0.06	3	44	3	44	y	0.00	0	96	0	96	n	0.00	0	70	0	70	n	0.07	5	62	5	62	y	ENSMUSG00000027371.11	Fahd2a	chr2	protein_coding	fumarylacetoacetate hydrolase domain containing 2A
known_NIR_10354	chr2	127282522	127286337	-	127282522;127284044	127283794;127286337	ES	ENSMUST00000028848.4	known	0.00	0	67.5	0	80;55	n	0.00	0	46.0	0	59;33	n	0.04	1	25.0	1	23;27	n	0.00	0	40.5	0	40;41	n	0.04	3	73.5	3	85;62	y	0.05	1	21.0	1	16;26	n	0.04	3	76.5	3	79;74	y	0.00	0	19.0	0	18;20	n	0.06	3	43.5	3	44;43	y	0.03	2	75.0	2	96;54	y	0.04	3	68.0	3	70;66	y	0.05	3	63.5	3	62;65	y	ENSMUSG00000027371.11	Fahd2a	chr2	protein_coding	fumarylacetoacetate hydrolase domain containing 2A
known_NIR_10355	chr2	127282522	127286337	-	127284044	127286337	A3SS&ES	ENSMUST00000137502.2	known	0.00	0	55	0	55	n	0.00	0	33	0	33	n	0.04	1	27	1	27	n	0.00	0	41	0	41	n	0.05	3	62	3	62	y	0.04	1	26	1	26	n	0.04	3	74	3	74	y	0.00	0	20	0	20	n	0.07	3	43	3	43	y	0.04	2	54	2	54	y	0.04	3	66	3	66	y	0.04	3	65	3	65	y	ENSMUSG00000027371.11	Fahd2a	chr2	protein_coding	fumarylacetoacetate hydrolase domain containing 2A
known_NIR_10356	chr2	127284044	127286337	-	127280489	127286337	A3SS	ENSMUST00000137366.8	known	1.00	55	0	55	0	n	1.00	33	0	33	0	n	1.00	27	0	27	0	n	0.98	41	1	41	1	n	1.00	62	0	62	0	n	0.90	26	3	26	3	y	1.00	74	0	74	0	n	0.91	20	2	20	2	y	0.98	43	1	43	1	n	0.96	54	2	54	2	y	0.97	66	2	66	2	y	1.00	65	0	65	0	n	ENSMUSG00000027371.11	Fahd2a	chr2	protein_coding	fumarylacetoacetate hydrolase domain containing 2A
known_NIR_10357	chr2	127608038	127610091	-	127608041	127610091	A3SS	ENSMUST00000028857.14	known	0.58	7	5	7	5	y	0.67	2	1	2	1	n	0.53	9	8	9	8	y	0.50	7	7	7	7	y	0.83	10	2	10	2	y	0.30	3	7	3	7	y	0.42	5	7	5	7	y	0.58	7	5	7	5	y	0.50	4	4	4	4	n	0.20	2	8	2	8	y	0.43	3	4	3	4	n	0.43	6	8	6	8	y	ENSMUSG00000027378.17	Nphp1	chr2	protein_coding	nephronophthisis 1 (juvenile) homolog (human)
known_NIR_10358	chr2	127969732	127970540	+	127968172	127970540	A5SS	ENSMUST00000146023.8	known	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.25	9	27	9	27	y	0.77	10	3	10	3	y	0.14	2	12	2	12	y	0.00	0	5	0	5	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.85	11	2	11	2	y	0.50	2	2	2	2	n	0.44	4	5	4	5	n	ENSMUSG00000027381.17	Bcl2l11	chr2	protein_coding	BCL2-like 11 (apoptosis facilitator)
known_NIR_10359	chr2	127970934	127989005	+	127970934	127971557	3pMXE	ENSMUST00000089634.12	known	0.67	2	1	2	1	n	0.43	3	4	3	4	n	0.76	28	9	28	9	y	0.75	9	3	9	3	y	0.50	2	2	2	2	n	1.00	3	0	3	0	n	0.50	7	7	7	7	y	0.57	4	3	4	3	n	1.00	4	0	4	0	n	0.75	3	1	3	1	n	0.67	4	2	4	2	n	0.76	13	4	13	4	y	ENSMUSG00000027381.17	Bcl2l11	chr2	protein_coding	BCL2-like 11 (apoptosis facilitator)
known_NIR_10360	chr2	128521522	128522314	-	128521522;128522129	128522029;128522314	ES	ENSMUST00000014499.10	known	0.00	0	7.0	0	5;9	n	0.11	1	8.0	1	14;2	n	0.31	8	18.0	8	16;20	y	0.18	5	23.5	5	18;29	y	0.12	4	30.5	4	28;33	y	0.00	0	10.0	0	11;9	n	0.11	2	17.0	2	19;15	y	0.28	4	10.5	4	13;8	y	0.00	0	11.5	0	11;12	n	0.08	2	23.0	2	25;21	y	0.19	2	8.5	2	4;13	y	0.23	7	23.5	7	18;29	y	ENSMUSG00000014355.11	Anapc1	chr2	protein_coding	anaphase promoting complex subunit 1
known_NIR_10361	chr2	128619418	128620840	+	128619418	128620835	A3SS	ENSMUST00000014505.5	known	0.00	0	29	0	29	n	0.15	2	11	2	11	y	0.00	0	23	0	23	n	0.00	0	17	0	17	n	0.03	1	29	1	29	n	0.00	0	7	0	7	n	0.00	0	21	0	21	n	0.13	2	13	2	13	y	0.03	1	35	1	35	n	0.03	1	31	1	31	n	0.00	0	22	0	22	n	0.04	1	26	1	26	n	ENSMUSG00000014361.6	Mertk	chr2	protein_coding	MER proto-oncogene tyrosine kinase
known_NIR_10362	chr2	128679315	128682652	+	128679315	128681068	A3SS&ES	ENSMUST00000152210.2	known	0.47	18	20	18	20	y	0.33	7	14	7	14	y	0.58	101	72	101	72	y	0.36	16	29	16	29	y	0.40	27	41	27	41	y	0.40	25	37	25	37	y	0.41	22	32	22	32	y	0.38	24	39	24	39	y	0.42	11	15	11	15	y	0.32	16	34	16	34	y	0.50	13	13	13	13	y	0.40	12	18	12	18	y	ENSMUSG00000014353.16	Tmem87b	chr2	protein_coding	transmembrane protein 87B
known_NIR_10363	chr2	128679315;128682723	128682652;128683155	+	128679315;128681139	128681068;128683155	MXE	ENSMUST00000110325.8	known	0.49	16.5	17.0	18;15	20;14	y	0.42	9.5	13.0	7;12	14;12	y	0.55	96.5	78.5	101;92	72;85	y	0.43	17.5	23.0	16;19	29;17	y	0.37	24.0	40.5	27;21	41;40	y	0.37	23.0	39.0	25;21	37;41	y	0.38	21.5	34.5	22;21	32;37	y	0.36	20.0	35.5	24;16	39;32	y	0.41	10.0	14.5	11;9	15;14	y	0.35	17.0	32.0	16;18	34;30	y	0.48	14.5	15.5	13;16	13;18	y	0.45	14.5	17.5	12;17	18;17	y	ENSMUSG00000014353.16	Tmem87b	chr2	protein_coding	transmembrane protein 87B
known_NIR_10364	chr2	129046075	129046166	+	129046075	129048287	A3SS	ENSMUST00000028880.10	known	0.11	6	47	6	47	y	0.28	8	21	8	21	y	0.32	21	45	21	45	y	0.06	2	30	2	30	y	0.10	4	36	4	36	y	0.27	12	32	12	32	y	0.20	9	36	9	36	y	0.20	4	16	4	16	y	0.13	2	13	2	13	y	0.26	9	26	9	26	y	0.11	2	16	2	16	y	0.16	6	31	6	31	y	ENSMUSG00000027397.15	Slc20a1	chr2	protein_coding	solute carrier family 20, member 1
known_NIR_10365	chr2	12929009	12979180	+	12929009	12985104	A3SS	ENSMUST00000150283.2	known	0.92	130	11	130	11	y	0.96	111	5	111	5	y	0.98	89	2	89	2	y	0.97	151	4	151	4	y	0.96	175	8	175	8	y	0.97	39	1	39	1	n	1.00	104	0	104	0	n	0.98	79	2	79	2	y	0.97	93	3	93	3	y	0.97	169	5	169	5	y	0.92	99	9	99	9	y	0.96	178	7	178	7	y	ENSMUSG00000026730.13	Pter	chr2	protein_coding	phosphotriesterase related
known_NIR_10366	chr2	12929009	12982971	+	12929009;12979264	12979180;12982971	ES	ENSMUST00000154269.7	known	0.36	69	124.5	69	130;119	y	0.33	48	99.0	48	111;87	y	0.24	28	87.0	28	89;85	y	0.32	67	142.0	67	151;133	y	0.34	86	167.5	86	175;160	y	0.48	31	34.0	31	39;29	y	0.32	51	106.0	51	104;108	y	0.39	43	67.5	43	79;56	y	0.35	63	114.5	63	93;136	y	0.36	93	168.0	93	169;167	y	0.37	60	100.5	60	99;102	y	0.34	99	192.0	99	178;206	y	ENSMUSG00000026730.13	Pter	chr2	protein_coding	phosphotriesterase related
known_NIR_10367	chr2	12929009	12985104	+	12983428	12985104	5pMXE	ENSMUST00000195521.2	known	0.05	11	197	11	197	y	0.03	5	180	5	180	y	0.02	2	128	2	128	y	0.02	4	216	4	216	y	0.03	8	246	8	246	y	0.02	1	62	1	62	n	0.00	0	204	0	204	n	0.02	2	103	2	103	y	0.02	3	187	3	187	y	0.02	5	253	5	253	y	0.05	9	176	9	176	y	0.02	7	305	7	305	y	ENSMUSG00000026730.13	Pter	chr2	protein_coding	phosphotriesterase related
known_NIR_10368	chr2	12929009;12983224	12982971;12985104	+	12929009	12985104	cassetteExon	ENSMUST00000150283.2	known	0.79	42.5	11	69;16	11	y	0.86	30.5	5	48;13	5	y	0.91	20.0	2	28;12	2	y	0.92	44.0	4	67;21	4	y	0.86	50.0	8	86;14	8	y	0.95	19.5	1	31;8	1	n	1.00	31.5	0	51;12	0	n	0.93	27.5	2	43;12	2	y	0.92	35.0	3	63;7	3	y	0.91	53.0	5	93;13	5	y	0.81	38.0	9	60;16	9	y	0.89	58.0	7	99;17	7	y	ENSMUSG00000026730.13	Pter	chr2	protein_coding	phosphotriesterase related
known_NIR_10369	chr2	12929009;12983428	12982971;12985104	+	12929009	12985104	cassetteExon	ENSMUST00000150283.2	known	0.92	133.0	11	69;197	11	y	0.96	114.0	5	48;180	5	y	0.97	78.0	2	28;128	2	y	0.97	141.5	4	67;216	4	y	0.95	166.0	8	86;246	8	y	0.98	46.5	1	31;62	1	n	1.00	127.5	0	51;204	0	n	0.97	73.0	2	43;103	2	y	0.98	125.0	3	63;187	3	y	0.97	173.0	5	93;253	5	y	0.93	118.0	9	60;176	9	y	0.97	202.0	7	99;305	7	y	ENSMUSG00000026730.13	Pter	chr2	protein_coding	phosphotriesterase related
known_NIR_10370	chr2	129451180	129457367	+	129451180	129460377	A3SS	ENSMUST00000099113.10	known	0.87	13	2	13	2	y	0.71	5	2	5	2	n	0.81	17	4	17	4	y	0.82	9	2	9	2	y	0.85	22	4	22	4	y	0.83	15	3	15	3	y	0.95	20	1	20	1	n	0.73	8	3	8	3	y	1.00	14	0	14	0	n	0.70	7	3	7	3	y	1.00	15	0	15	0	n	0.82	9	2	9	2	y	ENSMUSG00000037902.19	Sirpa	chr2	protein_coding	signal-regulatory protein alpha
known_NIR_10371	chr2	129469905	129471847	+	129469917	129471847	A5SS	ENSMUST00000161620.8	known	0.94	31	2	31	2	y	0.88	15	2	15	2	y	0.85	23	4	23	4	y	0.90	9	1	9	1	n	0.94	29	2	29	2	y	0.95	18	1	18	1	n	0.82	18	4	18	4	y	0.96	23	1	23	1	n	0.77	20	6	20	6	y	0.90	9	1	9	1	n	0.82	9	2	9	2	y	0.94	15	1	15	1	n	ENSMUSG00000037902.19	Sirpa	chr2	protein_coding	signal-regulatory protein alpha
known_NIR_10372	chr2	129643924	129652408	+	129643924	129669694	A3SS	ENSMUST00000166282.3	known	0.74	14	5	14	5	y	0.45	10	12	10	12	y	0.65	15	8	15	8	y	0.83	24	5	24	5	y	0.69	22	10	22	10	y	0.69	9	4	9	4	y	0.68	19	9	19	9	y	0.83	10	2	10	2	y	0.50	9	9	9	9	y	0.81	25	6	25	6	y	0.88	21	3	21	3	y	0.70	14	6	14	6	y	ENSMUSG00000037885.19	Stk35	chr2	protein_coding	serine/threonine kinase 35
known_NIR_10373	chr2	129643924	129669694	+	129643924;129653157	129652408;129669694	ES	ENSMUST00000165413.9	known	0.25	5	15.0	5	14;16	y	0.44	12	15.0	12	10;20	y	0.41	8	11.5	8	15;8	y	0.16	5	26.5	5	24;29	y	0.32	10	21.5	10	22;21	y	0.33	4	8.0	4	9;7	y	0.32	9	19.0	9	19;19	y	0.16	2	10.5	2	10;11	y	0.49	9	9.5	9	9;10	y	0.19	6	25.0	6	25;25	y	0.17	3	15.0	3	21;9	y	0.22	6	21.0	6	14;28	y	ENSMUSG00000037885.19	Stk35	chr2	protein_coding	serine/threonine kinase 35
known_NIR_10374	chr2	129653157	129669694	+	129643924	129669694	A5SS	ENSMUST00000166282.3	known	0.76	16	5	16	5	y	0.62	20	12	20	12	y	0.50	8	8	8	8	y	0.85	29	5	29	5	y	0.68	21	10	21	10	y	0.64	7	4	7	4	y	0.68	19	9	19	9	y	0.85	11	2	11	2	y	0.53	10	9	10	9	y	0.81	25	6	25	6	y	0.75	9	3	9	3	y	0.82	28	6	28	6	y	ENSMUSG00000037885.19	Stk35	chr2	protein_coding	serine/threonine kinase 35
known_NIR_10375	chr2	12983224	12985104	+	12983428	12985104	A5SS	ENSMUST00000154269.7	known	0.08	16	197	16	197	y	0.07	13	180	13	180	y	0.09	12	128	12	128	y	0.09	21	216	21	216	y	0.05	14	246	14	246	y	0.11	8	62	8	62	y	0.06	12	204	12	204	y	0.10	12	103	12	103	y	0.04	7	187	7	187	y	0.05	13	253	13	253	y	0.08	16	176	16	176	y	0.05	17	305	17	305	y	ENSMUSG00000026730.13	Pter	chr2	protein_coding	phosphotriesterase related
known_NIR_10376	chr2	12985369	13005668	+	12985369;12999631	12999561;13005668	ES	ENSMUST00000028063.7	known	0.00	0	118.5	0	231;6	n	0.02	2	115.5	2	223;8	y	0.00	0	80.0	0	153;7	n	0.00	0	111.0	0	208;14	n	0.00	0	130.0	0	248;12	n	0.00	0	30.5	0	61;0	n	0.00	0	105.5	0	203;8	n	0.00	0	62.0	0	118;6	n	0.00	0	113.0	0	216;10	n	0.00	0	141.0	0	274;8	n	0.00	0	117.5	0	227;8	n	0.00	0	168.0	0	329;7	n	ENSMUSG00000026730.13	Pter	chr2	protein_coding	phosphotriesterase related
known_NIR_10377	chr2	12985369	13005668	+	12985369;12999701	12999561;13005668	ES	ENSMUST00000154269.7	known	0.00	0	268.5	0	231;306	n	0.01	2	283.5	2	223;344	y	0.00	0	175.5	0	153;198	n	0.00	0	230.0	0	208;252	n	0.00	0	269.5	0	248;291	n	0.00	0	62.5	0	61;64	n	0.00	0	262.0	0	203;321	n	0.00	0	132.0	0	118;146	n	0.00	0	233.5	0	216;251	n	0.00	0	322.0	0	274;370	n	0.00	0	254.0	0	227;281	n	0.00	0	380.0	0	329;431	n	ENSMUSG00000026730.13	Pter	chr2	protein_coding	phosphotriesterase related
known_NIR_10378	chr2	12999631	13005668	+	12999701	13005668	A5SS	ENSMUST00000154269.7	known	0.02	6	306	6	306	y	0.02	8	344	8	344	y	0.03	7	198	7	198	y	0.05	14	252	14	252	y	0.04	12	291	12	291	y	0.00	0	64	0	64	n	0.02	8	321	8	321	y	0.04	6	146	6	146	y	0.04	10	251	10	251	y	0.02	8	370	8	370	y	0.03	8	281	8	281	y	0.02	7	431	7	431	y	ENSMUSG00000026730.13	Pter	chr2	protein_coding	phosphotriesterase related
known_NIR_10379	chr2	130017361;130018672	130018549;130018935	-	130017361	130018935	cassetteExon	ENSMUST00000103199.9	known	0.01	2.5	292	2;3	292	y	0.00	0.5	252	1;0	252	n	0.01	3.0	331	3;3	331	y	0.01	1.5	292	2;1	292	n	0.01	2.5	347	4;1	347	n	0.01	1.0	159	1;1	159	n	0.00	0.0	378	0;0	378	n	0.01	2.0	137	3;1	137	n	0.02	4.0	211	2;6	211	y	0.01	3.0	326	1;5	326	n	0.01	2.5	301	4;1	301	n	0.01	3.0	330	4;2	330	y	ENSMUSG00000027404.17	Snrpb	chr2	protein_coding	small nuclear ribonucleoprotein B
known_NIR_10380	chr2	130019086	130020654	-	130019086	130021154	A5SS	ENSMUST00000103199.9	known	0.00	1	279	1	279	n	0.00	0	218	0	218	n	0.00	0	315	0	315	n	0.00	0	300	0	300	n	0.00	2	402	2	402	y	0.00	0	164	0	164	n	0.00	0	345	0	345	n	0.00	0	157	0	157	n	0.00	0	228	0	228	n	0.00	0	364	0	364	n	0.00	0	331	0	331	n	0.00	0	307	0	307	n	ENSMUSG00000027404.17	Snrpb	chr2	protein_coding	small nuclear ribonucleoprotein B
known_NIR_10381	chr2	130119234	130119396	+	130119052	130119396	A5SS	ENSMUST00000103198.11	known	0.00	0	57	0	57	n	0.05	2	37	2	37	y	0.04	2	43	2	43	y	0.03	1	37	1	37	n	0.03	2	62	2	62	y	0.00	0	34	0	34	n	0.00	0	48	0	48	n	0.00	0	20	0	20	n	0.00	0	26	0	26	n	0.00	0	46	0	46	n	0.02	1	49	1	49	n	0.00	0	46	0	46	n	ENSMUSG00000027405.17	Nop56	chr2	protein_coding	NOP56 ribonucleoprotein
known_NIR_10382	chr2	130120210	130120817	+	130120210	130120333	A3SS	ENSMUST00000146454.9	known	0.99	68	1	68	1	n	0.89	57	7	57	7	y	0.94	77	5	77	5	y	0.85	45	8	45	8	y	0.93	65	5	65	5	y	0.90	27	3	27	3	y	0.90	62	7	62	7	y	0.94	29	2	29	2	y	0.94	34	2	34	2	y	0.89	56	7	56	7	y	0.96	65	3	65	3	y	1.00	62	0	62	0	n	ENSMUSG00000027405.17	Nop56	chr2	protein_coding	NOP56 ribonucleoprotein
known_NIR_10383	chr2	130120210;130120451	130120333;130120817	+	130120210	130120817	cassetteExon	ENSMUST00000103198.11	known	0.04	2.5	68	1;4	68	n	0.06	3.5	57	7;0	57	n	0.03	2.5	77	5;0	77	n	0.09	4.5	45	8;1	45	n	0.04	2.5	65	5;0	65	n	0.05	1.5	27	3;0	27	n	0.05	3.5	62	7;0	62	n	0.03	1.0	29	2;0	29	n	0.03	1.0	34	2;0	34	n	0.06	3.5	56	7;0	56	n	0.04	2.5	65	3;2	65	y	0.00	0.0	62	0;0	62	n	ENSMUSG00000027405.17	Nop56	chr2	protein_coding	NOP56 ribonucleoprotein
known_NIR_10384	chr2	130121357	130122183	-	130121357;130121646	130121476;130122183	ES	ENSMUST00000184538.2	known	0.04	8	185.5	8	16;355	y	0.07	15	209.5	15	29;390	y	0.01	2	134.0	2	15;253	y	0.04	7	186.0	7	15;357	y	0.01	2	201.5	2	19;384	y	0.08	7	80.5	7	7;154	y	0.29	87	213.0	87	14;412	y	0.01	1	75.0	1	5;145	n	0.01	2	175.0	2	18;332	y	0.03	10	320.0	10	42;598	y	0.03	9	261.5	9	43;480	y	0.05	14	267.5	14	33;502	y	ENSMUSG00000027406.14	Idh3b	chr2	protein_coding	isocitrate dehydrogenase 3 (NAD+) beta
known_NIR_10385	chr2	130121357	130122183	-	130121646	130122183	A3SS	ENSMUST00000028892.11	known	0.02	8	355	8	355	y	0.04	15	390	15	390	y	0.01	2	253	2	253	y	0.02	7	357	7	357	y	0.01	2	384	2	384	y	0.04	7	154	7	154	y	0.17	87	412	87	412	y	0.01	1	145	1	145	n	0.01	2	332	2	332	y	0.02	10	598	10	598	y	0.02	9	480	9	480	y	0.03	14	502	14	502	y	ENSMUSG00000027406.14	Idh3b	chr2	protein_coding	isocitrate dehydrogenase 3 (NAD+) beta
known_NIR_10386	chr2	130261253;130261810	130261550;130263810	-	130261253	130263810	cassetteExon	ENSMUST00000131561.8	known	0.95	40.0	2	46;34	2	y	1.00	38.0	0	38;38	0	n	1.00	35.0	0	45;25	0	n	1.00	23.5	0	21;26	0	n	1.00	41.0	0	40;42	0	n	1.00	33.5	0	39;28	0	n	0.98	47.0	1	60;34	1	n	1.00	21.0	0	21;21	0	n	0.97	32.0	1	31;33	1	n	1.00	43.0	0	49;37	0	n	0.92	33.0	3	30;36	3	y	0.94	32.0	2	39;25	2	y	ENSMUSG00000037773.15	Pced1a	chr2	protein_coding	PC-esterase domain containing 1A
known_NIR_10387	chr2	130264295	130264733	-	130264295	130264386	A5SS	ENSMUST00000142536.2	known	0.06	2	29	2	29	y	0.00	0	48	0	48	n	0.02	1	48	1	48	n	0.00	0	44	0	44	n	0.00	0	42	0	42	n	0.00	0	39	0	39	n	0.00	0	50	0	50	n	0.00	0	30	0	30	n	0.00	0	27	0	27	n	0.00	0	53	0	53	n	0.00	0	45	0	45	n	0.03	1	31	1	31	n	ENSMUSG00000037773.15	Pced1a	chr2	protein_coding	PC-esterase domain containing 1A
known_NIR_10388	chr2	130264295	130264733	-	130264624	130264733	A3SS	ENSMUST00000123977.8	known	0.10	2	18	2	18	y	0.00	0	25	0	25	n	0.04	1	23	1	23	n	0.00	0	27	0	27	n	0.00	0	33	0	33	n	0.00	0	12	0	12	n	0.00	0	25	0	25	n	0.00	0	23	0	23	n	0.00	0	11	0	11	n	0.00	0	36	0	36	n	0.00	0	24	0	24	n	0.03	1	28	1	28	n	ENSMUSG00000037773.15	Pced1a	chr2	protein_coding	PC-esterase domain containing 1A
known_NIR_10389	chr2	130264295;130264624	130264386;130264733	-	130264295	130264733	cassetteExon	ENSMUST00000131561.8	known	0.92	23.5	2	29;18	2	y	1.00	36.5	0	48;25	0	n	0.97	35.5	1	48;23	1	n	1.00	35.5	0	44;27	0	n	1.00	37.5	0	42;33	0	n	1.00	25.5	0	39;12	0	n	1.00	37.5	0	50;25	0	n	1.00	26.5	0	30;23	0	n	1.00	19.0	0	27;11	0	n	1.00	44.5	0	53;36	0	n	1.00	34.5	0	45;24	0	n	0.97	29.5	1	31;28	1	n	ENSMUSG00000037773.15	Pced1a	chr2	protein_coding	PC-esterase domain containing 1A
known_NIR_10390	chr2	130264812	130265358	-	130264812	130265332	A5SS	ENSMUST00000131561.8	known	0.00	0	43	0	43	n	0.03	1	31	1	31	n	0.07	2	27	2	27	y	0.03	1	39	1	39	n	0.06	3	46	3	46	y	0.04	1	23	1	23	n	0.00	0	37	0	37	n	0.07	2	26	2	26	y	0.00	0	29	0	29	n	0.05	2	39	2	39	y	0.03	1	28	1	28	n	0.04	1	27	1	27	n	ENSMUSG00000037773.15	Pced1a	chr2	protein_coding	PC-esterase domain containing 1A
known_NIR_10391	chr2	130280750	130281540	+	130281445	130281540	A5SS&ES	ENSMUST00000028900.11	known	0.00	0	38	0	38	n	0.06	2	29	2	29	y	0.00	0	51	0	51	n	0.03	1	39	1	39	n	0.02	1	53	1	53	n	0.00	0	29	0	29	n	0.02	1	43	1	43	n	0.04	1	24	1	24	n	0.03	1	36	1	36	n	0.00	0	33	0	33	n	0.03	1	28	1	28	n	0.00	0	40	0	40	n	ENSMUSG00000027411.18	Vps16	chr2	protein_coding	VSP16 CORVET/HOPS core subunit
known_NIR_10392	chr2	130282948	130283085	+	130282928	130283085	A5SS	ENSMUST00000028900.11	known	0.00	0	36	0	36	n	0.03	1	36	1	36	n	0.13	6	41	6	41	y	0.05	2	42	2	42	y	0.16	7	38	7	38	y	0.04	1	22	1	22	n	0.00	0	52	0	52	n	0.14	5	30	5	30	y	0.05	2	38	2	38	y	0.06	3	49	3	49	y	0.05	2	39	2	39	y	0.02	1	48	1	48	n	ENSMUSG00000027411.18	Vps16	chr2	protein_coding	VSP16 CORVET/HOPS core subunit
known_NIR_10393	chr2	130283423	130283537	+	130283423	130283528	A3SS	ENSMUST00000028900.11	known	0.07	4	55	4	55	y	0.09	6	63	6	63	y	0.21	12	45	12	45	y	0.07	3	43	3	43	y	0.13	6	41	6	41	y	0.07	3	37	3	37	y	0.05	3	54	3	54	y	0.00	0	24	0	24	n	0.03	1	34	1	34	n	0.10	8	69	8	69	y	0.00	0	44	0	44	n	0.04	3	67	3	67	y	ENSMUSG00000027411.18	Vps16	chr2	protein_coding	VSP16 CORVET/HOPS core subunit
known_NIR_10394	chr2	130346255;130351776	130351750;130359651	+	130346255	130359651	cassetteExon	ENSMUST00000028769.14	known	0.05	2.0	41	2;2	41	y	0.07	1.5	19	1;2	19	n	0.10	5.0	44	7;3	44	y	0.11	4.5	35	3;6	35	y	0.00	0.0	49	0;0	49	n	0.02	0.5	29	0;1	29	n	0.07	3.0	42	3;3	42	y	0.16	6.5	33	6;7	33	y	0.04	1.5	34	1;2	34	n	0.01	0.5	52	0;1	52	n	0.10	4.0	36	5;3	36	y	0.05	3.5	64	3;4	64	y	ENSMUSG00000027303.19	Ptpra	chr2	protein_coding	protein tyrosine phosphatase, receptor type, A
known_NIR_10395	chr2	130458662	130471836	-	130446546	130471836	A3SS	ENSMUST00000028761.5	known	0.50	2	2	2	2	n	0.50	1	1	1	1	n	0.40	2	3	2	3	n	0.44	4	5	4	5	n	0.38	3	5	3	5	n	0.60	3	2	3	2	n	0.00	0	2	0	2	n	0.33	2	4	2	4	n	0.50	5	5	5	5	y	0.33	3	6	3	6	n	0.33	1	2	1	2	n	0.00	0	5	0	5	n	ENSMUSG00000027300.11	Ubox5	chr2	protein_coding	U box domain containing 5
known_NIR_10396	chr2	130478547	130479205	-	130478547	130478863	A5SS	ENSMUST00000089561.10	known	0.03	1	28	1	28	n	0.00	0	22	0	22	n	0.00	0	11	0	11	n	0.10	4	37	4	37	y	0.09	5	51	5	51	y	0.00	0	15	0	15	n	0.06	2	33	2	33	y	0.09	2	21	2	21	y	0.16	5	26	5	26	y	0.10	5	46	5	46	y	0.03	1	29	1	29	n	0.04	2	44	2	44	y	ENSMUSG00000037703.15	Lzts3	chr2	protein_coding	leucine zipper, putative tumor suppressor family member 3
known_NIR_10397	chr2	130500258	130500393	-	130500258	130500509	A5SS	ENSMUST00000089559.11	known	0.00	2	424	2	424	y	0.00	0	489	0	489	n	0.00	0	439	0	439	n	0.00	0	426	0	426	n	0.00	1	500	1	500	n	0.00	0	299	0	299	n	0.00	1	583	1	583	n	0.00	0	247	0	247	n	0.00	0	429	0	429	n	0.00	0	666	0	666	n	0.00	0	582	0	582	n	0.00	0	630	0	630	n	ENSMUSG00000068290.12	Ddrgk1	chr2	protein_coding	DDRGK domain containing 1
known_NIR_10398	chr2	130503758	130505268	-	130503758;130504109	130503997;130505268	ES	ENSMUST00000089559.11	known	0.00	2	553.5	2	593;514	y	0.00	0	622.5	0	627;618	n	0.00	0	515.0	0	511;519	n	0.00	0	570.0	0	572;568	n	0.00	0	664.0	0	637;691	n	0.01	2	313.5	2	327;300	y	0.00	0	706.5	0	735;678	n	0.00	0	347.5	0	348;347	n	0.00	0	524.0	0	545;503	n	0.00	0	824.5	0	856;793	n	0.00	0	683.5	0	683;684	n	0.00	0	758.0	0	787;729	n	ENSMUSG00000068290.12	Ddrgk1	chr2	protein_coding	DDRGK domain containing 1
known_NIR_10399	chr2	130555423	130561760	-	130555423;130559267	130559181;130561760	ES	ENSMUST00000044766.15	known	0.00	0	20.0	0	25;15	n	0.00	0	14.5	0	15;14	n	0.05	2	39.0	2	37;41	y	0.06	2	30.5	2	34;27	y	0.03	1	31.0	1	27;35	n	0.05	1	20.0	1	18;22	n	0.00	0	38.0	0	41;35	n	0.06	2	30.0	2	33;27	y	0.00	0	15.5	0	19;12	n	0.00	0	29.5	0	33;26	n	0.00	0	16.5	0	11;22	n	0.00	0	37.0	0	45;29	n	ENSMUSG00000027309.19	4930402H24Rik	chr2	protein_coding	RIKEN cDNA 4930402H24 gene
known_NIR_10400	chr2	130645842	130648791	-	130640185	130648791	A3SS	ENSMUST00000044766.15	known	0.23	3	10	3	10	y	0.62	8	5	8	5	y	0.11	3	24	3	24	y	0.33	5	10	5	10	y	0.33	14	29	14	29	y	0.10	2	19	2	19	y	0.36	8	14	8	14	y	0.10	2	19	2	19	y	0.50	7	7	7	7	y	0.49	23	24	23	24	y	0.47	8	9	8	9	y	0.20	10	39	10	39	y	ENSMUSG00000027309.19	4930402H24Rik	chr2	protein_coding	RIKEN cDNA 4930402H24 gene
known_NIR_10401	chr2	130654861	130662389	-	130654861	130656099	5pMXE	ENSMUST00000142128.2	known	0.00	0	19	0	19	n	0.00	0	8	0	8	n	0.00	0	47	0	47	n	0.00	0	18	0	18	n	0.00	0	35	0	35	n	0.00	0	13	0	13	n	0.07	2	26	2	26	y	0.06	1	17	1	17	n	0.00	0	14	0	14	n	0.00	0	30	0	30	n	0.00	0	25	0	25	n	0.00	0	30	0	30	n	ENSMUSG00000027309.19	4930402H24Rik	chr2	protein_coding	RIKEN cDNA 4930402H24 gene
known_NIR_10402	chr2	130654861	130662389	-	130654861;130656223	130656099;130662389	ES	ENSMUST00000044766.15	known	0.00	0	17.0	0	19;15	n	0.00	0	5.5	0	8;3	n	0.00	0	36.5	0	47;26	n	0.00	0	13.5	0	18;9	n	0.00	0	29.5	0	35;24	n	0.00	0	11.0	0	13;9	n	0.08	2	22.5	2	26;19	y	0.08	1	11.5	1	17;6	n	0.00	0	11.0	0	14;8	n	0.00	0	24.0	0	30;18	n	0.00	0	16.5	0	25;8	n	0.00	0	23.0	0	30;16	n	ENSMUSG00000027309.19	4930402H24Rik	chr2	protein_coding	RIKEN cDNA 4930402H24 gene
known_NIR_10403	chr2	130664420	130681884	-	130656223	130681884	A3SS	ENSMUST00000120316.8	known	1.00	5	0	5	0	n	-	-	-	-	-	-	1.00	29	0	29	0	n	1.00	13	0	13	0	n	1.00	14	0	14	0	n	1.00	16	0	16	0	n	0.92	12	1	12	1	n	1.00	9	0	9	0	n	1.00	12	0	12	0	n	1.00	16	0	16	0	n	0.88	14	2	14	2	y	1.00	13	0	13	0	n	ENSMUSG00000027309.19	4930402H24Rik	chr2	protein_coding	RIKEN cDNA 4930402H24 gene
known_NIR_10404	chr2	130725907	130748131	-	130717676	130748131	A3SS	ENSMUST00000135110.2	known	1.00	5	0	5	0	n	1.00	11	0	11	0	n	1.00	12	0	12	0	n	0.83	5	1	5	1	n	1.00	21	0	21	0	n	1.00	3	0	3	0	n	0.80	8	2	8	2	y	1.00	9	0	9	0	n	1.00	4	0	4	0	n	0.88	15	2	15	2	y	1.00	8	0	8	0	n	1.00	8	0	8	0	n	ENSMUSG00000085566.2	A730017L22Rik	chr2	lncRNA	RIKEN cDNA A730017L22 gene
known_NIR_10405	chr2	131052601	131054367	+	131052601	131053183	A3SS&ES	ENSMUST00000110206.2	known	0.48	20	22	20	22	y	0.34	15	29	15	29	y	0.35	35	64	35	64	y	0.44	22	28	22	28	y	0.32	24	52	24	52	y	0.29	16	39	16	39	y	0.37	29	49	29	49	y	0.31	17	38	17	38	y	0.21	11	42	11	42	y	0.33	25	50	25	50	y	0.41	30	44	30	44	y	0.42	25	35	25	35	y	ENSMUSG00000068264.12	Ap5s1	chr2	protein_coding	adaptor-related protein 5 complex, sigma 1 subunit
known_NIR_10406	chr2	131052601	131054371	+	131052601	131053183	A3SS&ES	ENSMUST00000110210.8	known	0.04	1	22	1	22	n	0.00	0	29	0	29	n	0.02	1	64	1	64	n	0.07	2	28	2	28	y	0.00	0	52	0	52	n	0.00	0	39	0	39	n	0.02	1	49	1	49	n	0.00	0	38	0	38	n	0.00	0	42	0	42	n	0.02	1	50	1	50	n	0.00	0	44	0	44	n	0.08	3	35	3	35	y	ENSMUSG00000068264.12	Ap5s1	chr2	protein_coding	adaptor-related protein 5 complex, sigma 1 subunit
known_NIR_10407	chr2	131052601	131054371	+	131052601	131054367	A3SS	ENSMUST00000134086.2	known	0.05	1	20	1	20	n	0.00	0	15	0	15	n	0.03	1	35	1	35	n	0.08	2	22	2	22	y	0.00	0	24	0	24	n	0.00	0	16	0	16	n	0.03	1	29	1	29	n	0.00	0	17	0	17	n	0.00	0	11	0	11	n	0.04	1	25	1	25	n	0.00	0	30	0	30	n	0.11	3	25	3	25	y	ENSMUSG00000068264.12	Ap5s1	chr2	protein_coding	adaptor-related protein 5 complex, sigma 1 subunit
known_NIR_10408	chr2	131052601;131053393	131053183;131054367	+	131052601	131054367	cassetteExon	ENSMUST00000134086.2	known	0.61	31.5	20	22;41	20	y	0.69	33.0	15	29;37	15	y	0.64	63.5	35	64;63	35	y	0.57	29.5	22	28;31	22	y	0.69	53.5	24	52;55	24	y	0.69	36.0	16	39;33	16	y	0.65	53.5	29	49;58	29	y	0.67	35.0	17	38;32	17	y	0.76	35.5	11	42;29	11	y	0.65	46.0	25	50;42	25	y	0.57	39.5	30	44;35	30	y	0.66	48.5	25	35;62	25	y	ENSMUSG00000068264.12	Ap5s1	chr2	protein_coding	adaptor-related protein 5 complex, sigma 1 subunit
known_NIR_10409	chr2	131052601;131053393	131053183;131054371	+	131052601	131054371	cassetteExon	ENSMUST00000153901.2	known	0.92	12.0	1	22;2	1	n	1.00	14.5	0	29;0	0	n	0.97	32.0	1	64;0	1	n	0.88	15.0	2	28;2	2	y	1.00	26.0	0	52;0	0	n	1.00	19.5	0	39;0	0	n	0.96	24.5	1	49;0	1	n	1.00	19.0	0	38;0	0	n	1.00	21.0	0	42;0	0	n	0.96	27.0	1	50;4	1	n	1.00	22.0	0	44;0	0	n	0.85	17.5	3	35;0	3	n	ENSMUSG00000068264.12	Ap5s1	chr2	protein_coding	adaptor-related protein 5 complex, sigma 1 subunit
known_NIR_10410	chr2	131053393	131054371	+	131053393	131054367	A3SS	ENSMUST00000110210.8	known	0.05	2	41	2	41	y	0.00	0	37	0	37	n	0.00	0	63	0	63	n	0.06	2	31	2	31	y	0.00	0	55	0	55	n	0.00	0	33	0	33	n	0.00	0	58	0	58	n	0.00	0	32	0	32	n	0.00	0	29	0	29	n	0.09	4	42	4	42	y	0.00	0	35	0	35	n	0.00	0	62	0	62	n	ENSMUSG00000068264.12	Ap5s1	chr2	protein_coding	adaptor-related protein 5 complex, sigma 1 subunit
known_NIR_10411	chr2	131054656	131054746	+	131054656	131055090	A3SS	ENSMUST00000110210.8	known	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.55	6	5	6	5	y	0.36	8	14	8	14	y	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.57	8	6	8	6	y	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	ENSMUSG00000068264.12	Ap5s1	chr2	protein_coding	adaptor-related protein 5 complex, sigma 1 subunit
known_NIR_10412	chr2	131076275	131080656	+	131076047	131080656	A5SS	ENSMUST00000130597.8	known	0.80	77	19	77	19	y	0.80	57	14	57	14	y	0.77	71	21	71	21	y	0.83	113	23	113	23	y	0.76	126	40	126	40	y	0.70	35	15	35	15	y	0.77	92	28	92	28	y	0.61	56	36	56	36	y	0.79	77	20	77	20	y	0.80	116	29	116	29	y	0.72	84	32	84	32	y	0.74	103	36	103	36	y	ENSMUSG00000037523.14	Mavs	chr2	protein_coding	mitochondrial antiviral signaling protein
known_NIR_10413	chr2	131080830	131082235	+	131080830;131081462	131081372;131082235	ES	ENSMUST00000130597.8	known	0.96	87	3.5	87	2;5	y	0.99	70	1.0	70	1;1	n	0.94	125	8.5	125	10;7	y	0.97	139	4.0	139	3;5	y	0.95	150	7.5	150	5;10	y	0.95	47	2.5	47	2;3	y	0.97	111	3.0	111	2;4	y	0.94	68	4.5	68	4;5	y	0.98	97	2.0	97	2;2	y	1.00	161	0.5	161	0;1	n	0.95	116	6.5	116	5;8	y	0.96	143	5.5	143	5;6	y	ENSMUSG00000037523.14	Mavs	chr2	protein_coding	mitochondrial antiviral signaling protein
known_NIR_10414	chr2	131084737	131085039	+	131083969	131085039	A5SS	ENSMUST00000130597.8	known	0.03	4	119	4	119	y	0.00	0	92	0	92	n	0.00	0	120	0	120	n	0.00	0	163	0	163	n	0.05	10	196	10	196	y	0.00	0	65	0	65	n	0.03	5	154	5	154	y	0.04	3	76	3	76	y	0.05	6	124	6	124	y	0.00	0	187	0	187	n	0.03	3	106	3	106	y	0.03	5	180	5	180	y	ENSMUSG00000037523.14	Mavs	chr2	protein_coding	mitochondrial antiviral signaling protein
known_NIR_10415	chr2	131116040	131122077	+	131116183	131122077	A5SS	ENSMUST00000131779.8	known	0.15	3	17	3	17	y	0.26	7	20	7	20	y	0.10	4	36	4	36	y	0.17	3	15	3	15	y	0.16	9	47	9	47	y	0.13	3	20	3	20	y	0.09	3	29	3	29	y	0.09	2	21	2	21	y	0.16	4	21	4	21	y	0.14	6	36	6	36	y	0.15	3	17	3	17	y	0.19	9	38	9	38	y	ENSMUSG00000037514.19	Pank2	chr2	protein_coding	pantothenate kinase 2
known_NIR_10416	chr2	131116040	131129394	+	131124688	131129394	A5SS&ES	ENSMUST00000150843.9	known	0.06	3	50	3	50	y	0.00	0	35	0	35	n	0.03	2	77	2	77	y	0.00	0	39	0	39	n	0.01	1	74	1	74	n	0.03	1	31	1	31	n	0.00	0	61	0	61	n	0.00	0	32	0	32	n	0.06	2	34	2	34	y	0.02	1	58	1	58	n	0.08	4	45	4	45	y	0.02	1	59	1	59	n	ENSMUSG00000037514.19	Pank2	chr2	protein_coding	pantothenate kinase 2
known_NIR_10417	chr2	131116183	131122077	+	131116183	131129394	A3SS	ENSMUST00000183388.2	known	0.94	17	1	17	1	n	0.83	20	4	20	4	y	0.88	36	5	36	5	y	0.83	15	3	15	3	y	0.92	47	4	47	4	y	0.91	20	2	20	2	y	0.88	29	4	29	4	y	0.95	21	1	21	1	n	0.95	21	1	21	1	n	0.97	36	1	36	1	n	0.89	17	2	17	2	y	0.95	38	2	38	2	y	ENSMUSG00000037514.19	Pank2	chr2	protein_coding	pantothenate kinase 2
known_NIR_10418	chr2	131116183	131122077	+	131116183	131135319	A3SS	ENSMUST00000145904.2	known	0.94	17	1	17	1	n	0.77	20	6	20	6	y	0.97	36	1	36	1	n	0.88	15	2	15	2	y	0.94	47	3	47	3	y	1.00	20	0	20	0	n	1.00	29	0	29	0	n	0.95	21	1	21	1	n	0.91	21	2	21	2	y	0.90	36	4	36	4	y	0.89	17	2	17	2	y	1.00	38	0	38	0	n	ENSMUSG00000037514.19	Pank2	chr2	protein_coding	pantothenate kinase 2
known_NIR_10419	chr2	131116183	131124512	+	131116183;131122330	131122077;131124512	ES	ENSMUST00000131779.8	known	0.05	1	19.0	1	17;21	n	0.00	0	24.0	0	20;28	n	0.02	1	42.0	1	36;48	n	0.04	1	24.5	1	15;34	n	0.05	2	40.5	2	47;34	y	0.00	0	18.5	0	20;17	n	0.05	2	39.5	2	29;50	y	0.15	4	22.5	4	21;24	y	0.04	1	23.0	1	21;25	n	0.00	0	33.0	0	36;30	n	0.05	1	21.0	1	17;25	n	0.03	1	35.0	1	38;32	n	ENSMUSG00000037514.19	Pank2	chr2	protein_coding	pantothenate kinase 2
known_NIR_10420	chr2	131116183	131124512	+	131122330	131124512	A5SS&ES	ENSMUST00000184105.9	known	0.05	1	21	1	21	n	0.00	0	28	0	28	n	0.02	1	48	1	48	n	0.03	1	34	1	34	n	0.06	2	34	2	34	y	0.00	0	17	0	17	n	0.04	2	50	2	50	y	0.14	4	24	4	24	y	0.04	1	25	1	25	n	0.00	0	30	0	30	n	0.04	1	25	1	25	n	0.03	1	32	1	32	n	ENSMUSG00000037514.19	Pank2	chr2	protein_coding	pantothenate kinase 2
known_NIR_10421	chr2	131116183	131129394	+	131124688	131129394	A5SS&ES	ENSMUST00000184105.9	known	0.02	1	50	1	50	n	0.10	4	35	4	35	y	0.06	5	77	5	77	y	0.07	3	39	3	39	y	0.05	4	74	4	74	y	0.06	2	31	2	31	y	0.06	4	61	4	61	y	0.03	1	32	1	32	n	0.03	1	34	1	34	n	0.02	1	58	1	58	n	0.04	2	45	2	45	y	0.03	2	59	2	59	y	ENSMUSG00000037514.19	Pank2	chr2	protein_coding	pantothenate kinase 2
known_NIR_10422	chr2	131116183	131135319	+	131129517	131135319	A5SS&ES	ENSMUST00000184105.9	known	0.02	1	49	1	49	n	0.09	6	58	6	58	y	0.01	1	78	1	78	n	0.03	2	60	2	60	y	0.03	3	95	3	95	y	0.00	0	61	0	61	n	0.00	0	60	0	60	n	0.02	1	54	1	54	n	0.04	2	46	2	46	y	0.04	4	96	4	96	y	0.03	2	62	2	62	y	0.00	0	70	0	70	n	ENSMUSG00000037514.19	Pank2	chr2	protein_coding	pantothenate kinase 2
known_NIR_10423	chr2	131116183;131124688	131124512;131129394	+	131116183	131129394	cassetteExon	ENSMUST00000183388.2	known	0.96	25.5	1	1;50	1	n	0.81	17.5	4	0;35	4	n	0.89	39.0	5	1;77	5	n	0.87	20.0	3	1;39	3	n	0.90	38.0	4	2;74	4	y	0.89	15.5	2	0;31	2	n	0.89	31.5	4	2;61	4	y	0.95	18.0	1	4;32	1	n	0.95	17.5	1	1;34	1	n	0.97	29.0	1	0;58	1	n	0.92	23.0	2	1;45	2	n	0.94	30.0	2	1;59	2	n	ENSMUSG00000037514.19	Pank2	chr2	protein_coding	pantothenate kinase 2
known_NIR_10424	chr2	131116183;131129517	131129394;131135319	+	131116183	131135319	cassetteExon	ENSMUST00000145904.2	known	0.96	25.0	1	1;49	1	n	0.84	31.0	6	4;58	6	y	0.98	41.5	1	5;78	1	n	0.94	31.5	2	3;60	2	y	0.94	49.5	3	4;95	3	y	1.00	31.5	0	2;61	0	n	1.00	32.0	0	4;60	0	n	0.96	27.5	1	1;54	1	n	0.92	23.5	2	1;46	2	n	0.92	48.5	4	1;96	4	n	0.94	32.0	2	2;62	2	y	1.00	36.0	0	2;70	0	n	ENSMUSG00000037514.19	Pank2	chr2	protein_coding	pantothenate kinase 2
known_NIR_10425	chr2	131129517;131130605	131130502;131135319	+	131129517	131135319	cassetteExon	ENSMUST00000150843.9	known	0.02	1.0	49	0;2	49	n	0.03	2.0	58	2;2	58	y	0.03	2.0	78	2;2	78	y	0.02	1.0	60	0;2	60	n	0.06	6.5	95	4;9	95	y	0.02	1.5	61	0;3	61	n	0.03	2.0	60	4;0	60	n	0.05	3.0	54	1;5	54	n	0.01	0.5	46	1;0	46	n	0.06	6.0	96	7;5	96	y	0.02	1.5	62	1;2	62	n	0.05	3.5	70	4;3	70	y	ENSMUSG00000037514.19	Pank2	chr2	protein_coding	pantothenate kinase 2
known_NIR_10426	chr2	131130605	131135319	+	131116183	131135319	A5SS	ENSMUST00000145904.2	known	0.67	2	1	2	1	n	0.25	2	6	2	6	n	0.67	2	1	2	1	n	0.50	2	2	2	2	n	0.75	9	3	9	3	y	1.00	3	0	3	0	n	-	-	-	-	-	-	0.83	5	1	5	1	n	0.00	0	2	0	2	n	0.56	5	4	5	4	n	0.50	2	2	2	2	n	1.00	3	0	3	0	n	ENSMUSG00000037514.19	Pank2	chr2	protein_coding	pantothenate kinase 2
known_NIR_10427	chr2	131362188	131363979	+	131362188;131363091	131362332;131363979	ES	ENSMUST00000028806.12	known	0.00	0	8.5	0	12;5	n	0.22	2	7.0	2	4;10	y	0.00	0	18.0	0	18;18	n	0.00	0	9.0	0	5;13	n	0.00	0	14.0	0	13;15	n	0.00	0	6.0	0	6;6	n	0.00	0	17.0	0	15;19	n	0.00	0	4.5	0	5;4	n	0.00	0	7.0	0	4;10	n	0.00	0	11.5	0	12;11	n	0.00	0	4.5	0	7;2	n	0.00	0	8.5	0	10;7	n	ENSMUSG00000027333.19	Smox	chr2	protein_coding	spermine oxidase
known_NIR_10428	chr2	131362188	131363979	+	131363091	131363979	A5SS	ENSMUST00000151627.8	known	0.00	0	5	0	5	n	0.17	2	10	2	10	y	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	19	0	19	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	ENSMUSG00000027333.19	Smox	chr2	protein_coding	spermine oxidase
known_NIR_10429	chr2	131363091	131366663	+	131363091;131364139	131363979;131366663	ES	ENSMUST00000028806.12	known	0.00	0	2.5	0	5;0	n	0.00	0	9.0	0	10;8	n	0.11	2	15.5	2	18;13	y	0.11	1	8.5	1	13;4	n	0.00	0	14.0	0	15;13	n	0.00	0	4.5	0	6;3	n	0.00	0	13.0	0	19;7	n	0.00	0	3.0	0	4;2	n	0.00	0	7.5	0	10;5	n	0.00	0	10.5	0	11;10	n	0.60	3	2.0	3	2;2	n	0.10	1	9.5	1	7;12	n	ENSMUSG00000027333.19	Smox	chr2	protein_coding	spermine oxidase
known_NIR_10430	chr2	131363091	131366663	+	131364139	131366663	5pMXE	ENSMUST00000151143.2	known	-	-	-	-	-	-	0.00	0	8	0	8	n	0.13	2	13	2	13	y	0.20	1	4	1	4	n	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.60	3	2	3	2	n	0.08	1	12	1	12	n	ENSMUSG00000027333.19	Smox	chr2	protein_coding	spermine oxidase
known_NIR_10431	chr2	131364139;131366253	131366164;131366663	+	131364139	131366663	cassetteExon	ENSMUST00000028806.12	known	1.00	1.0	0	0;2	0	n	0.11	1.0	8	0;2	8	n	0.10	1.5	13	1;2	13	n	0.20	1.0	4	2;0	4	n	0.21	3.5	13	2;5	13	y	0.00	0.0	3	0;0	3	n	0.07	0.5	7	0;1	7	n	0.60	3.0	2	3;3	2	n	0.09	0.5	5	1;0	5	n	0.05	0.5	10	0;1	10	n	0.50	2.0	2	3;1	2	n	0.11	1.5	12	1;2	12	n	ENSMUSG00000027333.19	Smox	chr2	protein_coding	spermine oxidase
known_NIR_10432	chr2	131919413	131931016	-	131919413;131920421	131920333;131931016	ES	ENSMUST00000028815.15	known	0.57	2	1.5	2	1;2	n	0.00	0	2.0	0	3;1	n	0.12	2	15.0	2	11;19	y	0.16	2	10.5	2	10;11	y	0.07	1	13.5	1	14;13	n	0.00	0	6.5	0	10;3	n	0.00	0	9.5	0	9;10	n	0.17	2	9.5	2	10;9	y	0.00	0	8.5	0	5;12	n	0.00	0	12.5	0	14;11	n	0.17	1	5.0	1	6;4	n	0.18	1	4.5	1	3;6	n	ENSMUSG00000027340.16	Slc23a2	chr2	protein_coding	solute carrier family 23 (nucleobase transporters), member 2
known_NIR_10433	chr2	132087994	132089493	-	132087994	132089516	A5SS	ENSMUST00000110163.8	known	0.90	52	6	52	6	y	0.92	35	3	35	3	y	0.92	66	6	66	6	y	0.88	58	8	58	8	y	0.91	79	8	79	8	y	0.81	22	5	22	5	y	0.86	59	10	59	10	y	0.92	36	3	36	3	y	0.90	28	3	28	3	y	0.86	42	7	42	7	y	0.93	40	3	40	3	y	0.88	44	6	44	6	y	ENSMUSG00000027341.11	Tmem230	chr2	protein_coding	transmembrane protein 230
known_NIR_10434	chr2	132087994	132089553	-	132087994	132089493	A5SS	ENSMUST00000028816.9	known	0.02	1	52	1	52	n	0.00	0	35	0	35	n	0.01	1	66	1	66	n	0.00	0	58	0	58	n	0.02	2	79	2	79	y	0.00	0	22	0	22	n	0.00	0	59	0	59	n	0.00	0	36	0	36	n	0.00	0	28	0	28	n	0.00	0	42	0	42	n	0.00	0	40	0	40	n	0.00	0	44	0	44	n	ENSMUSG00000027341.11	Tmem230	chr2	protein_coding	transmembrane protein 230
known_NIR_10435	chr2	132087994	132089553	-	132087994	132089516	A5SS	ENSMUST00000110163.8	known	0.14	1	6	1	6	n	0.00	0	3	0	3	n	0.14	1	6	1	6	n	0.00	0	8	0	8	n	0.20	2	8	2	8	y	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	ENSMUSG00000027341.11	Tmem230	chr2	protein_coding	transmembrane protein 230
known_NIR_10436	chr2	13229236;13246606	13246556;13275722	-	13229236	13275722	cassetteExon	ENSMUST00000114791.9	known	0.98	90.0	2	86;94	2	y	1.00	60.0	0	61;59	0	n	1.00	94.0	0	86;102	0	n	0.96	70.0	3	69;71	3	y	0.96	106.0	4	98;114	4	y	0.98	55.5	1	50;61	1	n	0.96	92.0	4	79;105	4	y	0.96	53.5	2	47;60	2	y	1.00	79.0	0	73;85	0	n	0.99	83.5	1	74;93	1	n	0.97	72.0	2	66;78	2	y	0.97	86.5	3	81;92	3	y	ENSMUSG00000026727.11	Rsu1	chr2	protein_coding	Ras suppressor protein 1
known_NIR_10437	chr2	132392474	132398855	-	132396000	132398855	3pMXE	ENSMUST00000110135.3	known	0.00	0	71	0	71	n	0.02	1	50	1	50	n	0.00	0	198	0	198	n	0.00	0	169	0	169	n	0.02	2	105	2	105	y	0.00	0	87	0	87	n	0.00	0	86	0	86	n	0.02	1	47	1	47	n	0.03	3	93	3	93	y	0.01	2	140	2	140	y	0.00	0	82	0	82	n	0.01	2	134	2	134	y	ENSMUSG00000027346.16	Gpcpd1	chr2	protein_coding	glycerophosphocholine phosphodiesterase 1
known_NIR_10438	chr2	132392474;132396000	132395877;132398855	-	132392474	132398855	cassetteExon	ENSMUST00000148833.8	known	1.00	68.5	0	66;71	0	n	0.98	64.5	1	79;50	1	n	1.00	207.0	0	216;198	0	n	1.00	185.0	0	201;169	0	n	0.98	105.5	2	106;105	2	y	1.00	90.0	0	93;87	0	n	1.00	103.0	0	120;86	0	n	0.98	51.5	1	56;47	1	n	0.97	109.0	3	125;93	3	y	0.99	157.0	2	174;140	2	y	1.00	75.0	0	68;82	0	n	0.99	161.5	2	189;134	2	y	ENSMUSG00000027346.16	Gpcpd1	chr2	protein_coding	glycerophosphocholine phosphodiesterase 1
known_NIR_10439	chr2	132398896;132400602	132400527;132406547	-	132398896	132406547	cassetteExon	ENSMUST00000148833.8	known	0.69	44.5	20	43;46	20	y	0.84	54.5	10	58;51	10	y	0.92	197.0	18	160;234	18	y	0.88	167.0	22	152;182	22	y	0.85	86.0	15	69;103	15	y	0.90	77.5	9	65;90	9	y	0.90	109.0	12	97;121	12	y	0.93	49.5	4	39;60	4	y	0.81	90.0	21	75;105	21	y	0.82	161.5	35	125;198	35	y	0.85	66.0	12	50;82	12	y	0.79	104.0	27	87;121	27	y	ENSMUSG00000027346.16	Gpcpd1	chr2	protein_coding	glycerophosphocholine phosphodiesterase 1
known_NIR_10440	chr2	132406631	132414105	-	132406631;132410636	132410540;132414105	ES	ENSMUST00000148833.8	known	0.00	0	51.0	0	50;52	n	0.00	0	45.5	0	52;39	n	0.02	3	176.0	3	202;150	y	0.01	1	153.0	1	190;116	n	0.00	0	76.5	0	86;67	n	0.04	3	64.5	3	83;46	y	0.05	5	86.5	5	119;54	y	0.00	0	35.5	0	39;32	n	0.00	0	90.0	0	103;77	n	0.02	3	136.5	3	178;95	y	0.00	0	68.0	0	80;56	n	0.01	1	123.0	1	147;99	n	ENSMUSG00000027346.16	Gpcpd1	chr2	protein_coding	glycerophosphocholine phosphodiesterase 1
known_NIR_10441	chr2	132414177	132419988	-	132414174	132419988	A3SS	ENSMUST00000148833.8	known	0.26	10	28	10	28	y	0.12	5	38	5	38	y	0.21	29	110	29	110	y	0.26	35	100	35	100	y	0.24	12	39	12	39	y	0.35	15	28	15	28	y	0.36	21	37	21	37	y	0.39	7	11	7	11	y	0.23	16	55	16	55	y	0.22	22	76	22	76	y	0.24	12	37	12	37	y	0.26	22	63	22	63	y	ENSMUSG00000027346.16	Gpcpd1	chr2	protein_coding	glycerophosphocholine phosphodiesterase 1
known_NIR_10442	chr2	132532148	132533870	+	132528901	132533870	A5SS	ENSMUST00000061891.11	known	0.00	0	6	0	6	n	0.50	5	5	5	5	y	0.29	2	5	2	5	n	0.12	2	15	2	15	y	0.33	2	4	2	4	n	0.00	0	5	0	5	n	0.11	1	8	1	8	n	0.00	0	5	0	5	n	0.30	3	7	3	7	y	0.12	2	14	2	14	y	0.38	6	10	6	10	y	0.19	3	13	3	13	y	ENSMUSG00000044991.11	Shld1	chr2	protein_coding	shieldin complex subunit 1
known_NIR_10443	chr2	132540561	132592133	+	132534051	132592133	A5SS	ENSMUST00000061891.11	known	0.00	0	18	0	18	n	0.00	0	24	0	24	n	0.00	0	23	0	23	n	0.02	1	40	1	40	n	0.00	0	27	0	27	n	0.00	0	9	0	9	n	0.00	0	37	0	37	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.04	1	24	1	24	n	0.00	0	26	0	26	n	0.05	2	38	2	38	y	ENSMUSG00000044991.11	Shld1	chr2	protein_coding	shieldin complex subunit 1
known_NIR_10444	chr2	132651873	132652126	-	132651873	132652007	A5SS	ENSMUST00000152836.7	known	1.00	16	0	16	0	n	0.79	11	3	11	3	y	0.97	31	1	31	1	n	1.00	21	0	21	0	n	0.85	28	5	28	5	y	0.91	32	3	32	3	y	0.92	23	2	23	2	y	0.94	16	1	16	1	n	1.00	17	0	17	0	n	0.82	18	4	18	4	y	0.86	18	3	18	3	y	0.84	16	3	16	3	y	ENSMUSG00000037376.15	Trmt6	chr2	protein_coding	tRNA methyltransferase 6
known_NIR_10445	chr2	132689811	132691786	+	132689045	132691786	A5SS	ENSMUST00000028835.13	known	0.00	0	75	0	75	n	0.04	2	48	2	48	y	0.01	1	73	1	73	n	0.00	0	60	0	60	n	0.00	0	101	0	101	n	0.00	0	46	0	46	n	0.00	0	77	0	77	n	0.00	0	31	0	31	n	0.02	1	45	1	45	n	0.00	0	85	0	85	n	0.03	2	56	2	56	y	0.05	3	63	3	63	y	ENSMUSG00000027357.17	Crls1	chr2	protein_coding	cardiolipin synthase 1
known_NIR_10446	chr2	132691923	132696813	+	132691923	132704255	A3SS	ENSMUST00000110122.10	known	0.97	168	5	168	5	y	0.96	162	7	162	7	y	0.98	178	3	178	3	y	0.99	190	2	190	2	y	0.99	239	2	239	2	y	1.00	106	0	106	0	n	1.00	237	1	237	1	n	0.99	140	2	140	2	y	1.00	148	0	148	0	n	0.98	228	4	228	4	y	1.00	176	0	176	0	n	1.00	195	0	195	0	n	ENSMUSG00000027357.17	Crls1	chr2	protein_coding	cardiolipin synthase 1
known_NIR_10447	chr2	132691923	132703129	+	132691923;132696942	132696813;132703129	ES	ENSMUST00000028835.13	known	0.01	1	171.0	1	168;174	n	0.00	0	175.5	0	162;189	n	0.00	0	176.5	0	178;175	n	0.00	0	177.5	0	190;165	n	0.00	0	223.5	0	239;208	n	0.01	1	108.5	1	106;111	n	0.02	5	230.0	5	237;223	y	0.01	1	129.5	1	140;119	n	0.01	2	149.0	2	148;150	y	0.02	6	248.0	6	228;268	y	0.02	3	175.5	3	176;175	y	0.02	4	203.0	4	195;211	y	ENSMUSG00000027357.17	Crls1	chr2	protein_coding	cardiolipin synthase 1
known_NIR_10448	chr2	132691923;132703214	132703129;132704255	+	132691923	132704255	cassetteExon	ENSMUST00000110122.10	known	0.96	114.5	5	1;228	5	n	0.94	101.5	7	0;203	7	n	0.98	120.0	3	0;240	3	n	0.98	93.0	2	0;186	2	n	0.99	140.5	2	0;281	2	n	1.00	73.0	0	1;145	0	n	0.99	146.5	1	5;288	1	n	0.97	70.5	2	1;140	2	n	1.00	89.0	0	2;176	0	n	0.98	157.5	4	6;309	4	y	1.00	109.5	0	3;216	0	n	1.00	124.5	0	4;245	0	n	ENSMUSG00000027357.17	Crls1	chr2	protein_coding	cardiolipin synthase 1
known_NIR_10449	chr2	134390200;134390591	134390353;134396116	-	134390200	134396116	cassetteExon	ENSMUST00000028704.3	known	0.00	1.0	426	0;2	426	n	0.01	2.5	323	3;2	323	y	0.01	6.0	425	5;7	425	y	0.00	1.0	555	0;2	555	n	0.00	2.5	728	3;2	728	y	0.00	0.5	349	0;1	349	n	0.00	1.0	635	0;2	635	n	0.00	2.0	496	0;4	496	n	0.00	1.0	398	1;1	398	n	0.00	2.0	647	3;1	647	n	0.00	0.5	398	1;0	398	n	0.00	2.5	598	0;5	598	n	ENSMUSG00000027261.3	Hao1	chr2	protein_coding	hydroxyacid oxidase 1, liver
known_NIR_10450	chr2	134481757	134483646	-	134481757	134485762	A5SS	ENSMUST00000038228.11	known	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	23	0	23	n	0.09	1	10	1	10	n	0.00	0	16	0	16	n	0.00	0	14	0	14	n	0.09	2	20	2	20	y	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	16	0	16	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	ENSMUSG00000034723.12	Tmx4	chr2	protein_coding	thioredoxin-related transmembrane protein 4
known_NIR_10451	chr2	135229804	135313973	+	135229804	135241169	3pMXE	ENSMUST00000070724.12	known	0.71	5	2	5	2	n	0.75	3	1	3	1	n	0.70	7	3	7	3	y	0.73	8	3	8	3	y	0.80	12	3	12	3	y	0.57	4	3	4	3	n	0.38	5	8	5	8	y	0.77	10	3	10	3	y	0.62	8	5	8	5	y	0.40	6	9	6	9	y	0.33	3	6	3	6	n	0.75	12	4	12	4	y	ENSMUSG00000051177.17	Plcb1	chr2	protein_coding	phospholipase C, beta 1
known_NIR_10452	chr2	135229804	135313973	+	135229804;135241286	135241169;135313973	ES	ENSMUST00000131552.5	known	0.62	5	3.0	5	2;4	y	0.46	3	3.5	3	1;6	n	0.58	7	5.0	7	3;7	y	0.67	8	4.0	8	3;5	y	0.80	12	3.0	12	3;3	y	0.50	4	4.0	4	3;5	y	0.33	5	10.0	5	8;12	y	0.67	10	5.0	10	3;7	y	0.67	8	4.0	8	5;3	y	0.44	6	7.5	6	9;6	y	0.22	3	10.5	3	6;15	y	0.67	12	6.0	12	4;8	y	ENSMUSG00000051177.17	Plcb1	chr2	protein_coding	phospholipase C, beta 1
known_NIR_10453	chr2	13528308;13529808	13529762;13530429	-	13528308	13530429	cassetteExon	ENSMUST00000124488.7	known	-	-	-	-	-	-	0.00	0.0	2	0;0	2	n	0.00	0.0	8	0;0	8	n	0.44	4.0	5	5;3	5	y	0.00	0.0	2	0;0	2	n	0.00	0.0	4	0;0	4	n	0.00	0.0	5	0;0	5	n	0.00	0.0	3	0;0	3	n	0.33	1.5	3	2;1	3	n	0.00	0.0	3	0;0	3	n	0.00	0.0	1	0;0	1	n	0.00	0.0	4	0;0	4	n	ENSMUSG00000026723.11	Trdmt1	chr2	protein_coding	tRNA aspartic acid methyltransferase 1
known_NIR_10454	chr2	136727620	136732963	-	136727620	136733199	A5SS	ENSMUST00000028730.13	known	0.91	131	13	131	13	y	0.80	102	25	102	25	y	0.83	100	20	100	20	y	0.91	136	13	136	13	y	0.92	132	11	132	11	y	0.80	66	17	66	17	y	0.90	178	19	178	19	y	0.89	65	8	65	8	y	0.86	126	20	126	20	y	0.89	151	19	151	19	y	0.91	134	13	134	13	y	0.91	132	13	132	13	y	ENSMUSG00000027274.17	Mkks	chr2	protein_coding	McKusick-Kaufman syndrome
known_NIR_10455	chr2	136842193;136846974	136846854;136885920	+	136842193	136885920	cassetteExon	ENSMUST00000028737.13	known	0.33	1.5	3	1;2	3	n	-	-	-	-	-	-	0.50	2.0	2	1;3	2	n	0.20	0.5	2	1;0	2	n	1.00	2.0	0	0;4	0	n	0.43	3.0	4	3;3	4	y	1.00	0.5	0	1;0	0	n	0.50	2.0	2	2;2	2	n	0.33	0.5	1	0;1	1	n	0.60	1.5	1	1;2	1	n	1.00	1.0	0	2;0	0	n	0.33	1.5	3	0;3	3	n	ENSMUSG00000027281.17	Slx4ip	chr2	protein_coding	SLX4 interacting protein
known_NIR_10456	chr2	139899419	139908674	-	139899419	139908407	A5SS	ENSMUST00000046656.9	known	0.60	3	2	3	2	n	0.22	2	7	2	7	n	0.25	5	15	5	15	y	0.58	11	8	11	8	y	0.31	8	18	8	18	y	0.56	9	7	9	7	y	0.29	7	17	7	17	y	0.48	10	11	10	11	y	0.40	2	3	2	3	n	0.25	2	6	2	6	n	0.33	4	8	4	8	y	0.39	7	11	7	11	y	ENSMUSG00000039033.12	Tasp1	chr2	protein_coding	taspase, threonine aspartase 1
known_NIR_10457	chr2	140242898	140260737	+	140242898	140294499	A3SS	ENSMUST00000110067.8	known	1.00	15	0	15	0	n	1.00	16	0	16	0	n	0.91	20	2	20	2	y	0.95	19	1	19	1	n	0.94	30	2	30	2	y	0.89	8	1	8	1	n	0.93	38	3	38	3	y	0.90	19	2	19	2	y	0.87	13	2	13	2	y	0.88	23	3	23	3	y	1.00	16	0	16	0	n	0.75	15	5	15	5	y	ENSMUSG00000068205.15	Macrod2	chr2	protein_coding	mono-ADP ribosylhydrolase 2
known_NIR_10458	chr2	140260834	140261871	+	140260834	140261825	A3SS	ENSMUST00000110062.8	known	0.00	0	16	0	16	n	0.00	0	23	0	23	n	0.00	0	25	0	25	n	0.10	2	19	2	19	y	0.00	0	31	0	31	n	0.00	0	13	0	13	n	0.00	0	22	0	22	n	0.00	0	15	0	15	n	0.06	1	15	1	15	n	0.00	0	39	0	39	n	0.00	0	27	0	27	n	0.00	0	19	0	19	n	ENSMUSG00000068205.15	Macrod2	chr2	protein_coding	mono-ADP ribosylhydrolase 2
known_NIR_10459	chr2	14040768;14045766	14045645;14049594	-	14040768	14049594	cassetteExon	ENSMUST00000131730.7	known	0.04	2.0	50	2;2	50	y	0.04	2.5	64	2;3	64	y	0.11	7.0	58	5;9	58	y	0.15	5.5	30	5;6	30	y	0.02	2.0	82	0;4	82	n	0.02	1.0	56	0;2	56	n	0.11	10.0	85	10;10	85	y	0.04	2.0	46	1;3	46	n	0.06	3.0	45	2;4	45	y	0.03	1.5	44	2;1	44	n	0.07	4.0	52	2;6	52	y	0.03	2.0	58	1;3	58	n	ENSMUSG00000063275.16	Hacd1	chr2	protein_coding	3-hydroxyacyl-CoA dehydratase 1
known_NIR_10460	chr2	14079147	14120628	+	14079147;14107296	14107212;14120628	ES	ENSMUST00000102960.11	known	0.00	0	15.0	0	18;12	n	0.00	0	10.5	0	13;8	n	0.00	0	26.5	0	27;26	n	0.00	0	16.0	0	14;18	n	0.00	0	21.5	0	19;24	n	0.12	1	7.5	1	7;8	n	0.10	2	17.5	2	17;18	y	0.00	0	16.0	0	20;12	n	0.00	0	13.0	0	12;14	n	0.00	0	24.5	0	26;23	n	0.00	0	13.5	0	11;16	n	0.00	0	20.0	0	20;20	n	ENSMUSG00000026718.18	Stam	chr2	protein_coding	signal transducing adaptor molecule (SH3 domain and ITAM motif) 1
known_NIR_10461	chr2	14135929	14136036	+	14135929	14139164	A3SS	ENSMUST00000102960.11	known	0.00	0	38	0	38	n	0.00	0	15	0	15	n	0.00	0	43	0	43	n	0.00	0	34	0	34	n	0.03	1	32	1	32	n	0.00	0	12	0	12	n	0.00	0	28	0	28	n	0.08	2	22	2	22	y	0.00	0	15	0	15	n	0.07	2	28	2	28	y	0.00	0	18	0	18	n	0.03	1	33	1	33	n	ENSMUSG00000026718.18	Stam	chr2	protein_coding	signal transducing adaptor molecule (SH3 domain and ITAM motif) 1
known_NIR_10462	chr2	14135929;14138519	14138454;14139164	+	14135929	14139164	cassetteExon	ENSMUST00000102960.11	known	0.00	0.0	38	0;0	38	n	0.00	0.0	15	0;0	15	n	0.01	0.5	43	0;1	43	n	0.07	2.5	34	2;3	34	y	0.00	0.0	32	0;0	32	n	0.00	0.0	12	0;0	12	n	0.00	0.0	28	0;0	28	n	0.04	1.0	22	1;1	22	n	0.09	1.5	15	3;0	15	n	0.07	2.0	28	1;3	28	n	0.00	0.0	18	0;0	18	n	0.01	0.5	33	0;1	33	n	ENSMUSG00000026718.18	Stam	chr2	protein_coding	signal transducing adaptor molecule (SH3 domain and ITAM motif) 1
known_NIR_10463	chr2	142543246	142544543	-	142532621	142544543	A3SS	ENSMUST00000230763.2	known	0.50	6	6	6	6	y	0.60	3	2	3	2	n	0.65	11	6	11	6	y	0.56	10	8	10	8	y	0.20	3	12	3	12	y	0.71	5	2	5	2	n	0.35	6	11	6	11	y	0.44	4	5	4	5	n	0.71	10	4	10	4	y	0.50	8	8	8	8	y	0.33	4	8	4	8	y	0.57	13	10	13	10	y	ENSMUSG00000038844.11	Kif16b	chr2	protein_coding	kinesin family member 16B
known_NIR_10464	chr2	143816529	143823386	-	143816529	143830068	A5SS	ENSMUST00000016072.12	known	0.00	0	196	0	196	n	0.01	1	148	1	148	n	0.00	0	275	0	275	n	0.01	2	235	2	235	y	0.01	2	348	2	348	y	0.00	0	176	0	176	n	0.00	0	202	0	202	n	0.00	0	232	0	232	n	0.00	0	156	0	156	n	0.00	0	229	0	229	n	0.01	2	169	2	169	y	0.00	0	269	0	269	n	ENSMUSG00000027422.16	Rrbp1	chr2	protein_coding	ribosome binding protein 1
known_NIR_10465	chr2	143828089	143830068	-	143816529	143830068	A3SS	ENSMUST00000016072.12	known	0.68	424	196	424	196	y	0.74	430	148	430	148	y	0.71	668	275	668	275	y	0.60	352	235	352	235	y	0.63	596	348	596	348	y	0.68	371	176	371	176	y	0.74	583	202	583	202	y	0.62	383	232	383	232	y	0.71	386	156	386	156	y	0.70	527	229	527	229	y	0.75	501	169	501	169	y	0.69	602	269	602	269	y	ENSMUSG00000027422.16	Rrbp1	chr2	protein_coding	ribosome binding protein 1
known_NIR_10466	chr2	144111512	144112297	-	144103944	144112297	A3SS	ENSMUST00000028909.5	known	0.04	4	93	4	93	y	0.00	0	82	0	82	n	0.04	4	85	4	85	y	0.01	1	115	1	115	n	0.05	8	155	8	155	y	0.00	0	47	0	47	n	0.00	0	124	0	124	n	0.04	3	78	3	78	y	0.08	7	82	7	82	y	0.06	7	115	7	115	y	0.00	0	85	0	85	n	0.00	0	122	0	122	n	ENSMUSG00000027423.16	Snx5	chr2	protein_coding	sorting nexin 5
known_NIR_10467	chr2	144112992	144113835	+	144112934	144113835	A5SS	ENSMUST00000110028.8	known	1.00	3	0	3	0	n	0.22	2	7	2	7	n	0.60	3	2	3	2	n	0.80	4	1	4	1	n	0.73	8	3	8	3	y	1.00	1	0	1	0	n	0.57	4	3	4	3	n	0.60	3	2	3	2	n	0.60	3	2	3	2	n	0.67	4	2	4	2	n	0.86	6	1	6	1	n	0.67	4	2	4	2	n	ENSMUSG00000027424.12	Mgme1	chr2	protein_coding	mitochondrial genome maintenance exonuclease 1
known_NIR_10468	chr2	144215289	144217765	+	144215775	144217765	A5SS	ENSMUST00000028911.15	known	0.00	0	19	0	19	n	0.20	3	12	3	12	y	0.22	7	25	7	25	y	0.17	6	29	6	29	y	0.08	3	35	3	35	y	0.12	2	14	2	14	y	0.03	1	31	1	31	n	0.30	6	14	6	14	y	0.16	3	16	3	16	y	0.18	8	37	8	37	y	0.14	4	24	4	24	y	0.06	2	32	2	32	y	ENSMUSG00000027425.19	Kat14	chr2	protein_coding	lysine acetyltransferase 14
known_NIR_10469	chr2	144376296	144377861	+	144376331	144377861	A5SS	ENSMUST00000028914.9	known	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	18	0	18	n	0.11	2	17	2	17	y	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	16	0	16	n	ENSMUSG00000027427.14	Polr3f	chr2	protein_coding	polymerase (RNA) III (DNA directed) polypeptide F
known_NIR_10470	chr2	144398262	144401127	+	144398244	144401127	A5SS	ENSMUST00000143573.8	known	0.44	21	27	21	27	y	0.27	6	16	6	16	y	0.38	28	45	28	45	y	0.46	17	20	17	20	y	0.14	5	32	5	32	y	0.28	10	26	10	26	y	0.32	9	19	9	19	y	0.41	16	23	16	23	y	0.56	10	8	10	8	y	0.60	9	6	9	6	y	0.38	6	10	6	10	y	0.34	11	21	11	21	y	ENSMUSG00000027429.17	Sec23b	chr2	protein_coding	SEC23 homolog B, COPII coat complex component
known_NIR_10471	chr2	144398333	144401127	+	144398244	144401127	A5SS	ENSMUST00000143573.8	known	0.04	1	27	1	27	n	0.11	2	16	2	16	y	0.02	1	45	1	45	n	0.05	1	20	1	20	n	0.03	1	32	1	32	n	0.10	3	26	3	26	y	0.14	3	19	3	19	y	0.12	3	23	3	23	y	0.00	0	8	0	8	n	0.14	1	6	1	6	n	0.00	0	10	0	10	n	0.05	1	21	1	21	n	ENSMUSG00000027429.17	Sec23b	chr2	protein_coding	SEC23 homolog B, COPII coat complex component
known_NIR_10472	chr2	144398333	144401127	+	144398262	144401127	A5SS	ENSMUST00000028916.15	known	0.05	1	21	1	21	n	0.25	2	6	2	6	n	0.03	1	28	1	28	n	0.06	1	17	1	17	n	0.17	1	5	1	5	n	0.23	3	10	3	10	y	0.25	3	9	3	9	y	0.16	3	16	3	16	y	0.00	0	10	0	10	n	0.10	1	9	1	9	n	0.00	0	6	0	6	n	0.08	1	11	1	11	n	ENSMUSG00000027429.17	Sec23b	chr2	protein_coding	SEC23 homolog B, COPII coat complex component
known_NIR_10473	chr2	144398567	144401127	+	144398244	144401127	A5SS	ENSMUST00000143573.8	known	0.18	6	27	6	27	y	0.20	4	16	4	16	y	0.30	19	45	19	45	y	0.00	0	20	0	20	n	0.14	5	32	5	32	y	0.10	3	26	3	26	y	0.10	2	19	2	19	y	0.08	2	23	2	23	y	0.11	1	8	1	8	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.05	1	21	1	21	n	ENSMUSG00000027429.17	Sec23b	chr2	protein_coding	SEC23 homolog B, COPII coat complex component
known_NIR_10474	chr2	144398567	144401127	+	144398262	144401127	A5SS	ENSMUST00000028916.15	known	0.22	6	21	6	21	y	0.40	4	6	4	6	y	0.40	19	28	19	28	y	0.00	0	17	0	17	n	0.50	5	5	5	5	y	0.23	3	10	3	10	y	0.18	2	9	2	9	y	0.11	2	16	2	16	y	0.09	1	10	1	10	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.08	1	11	1	11	n	ENSMUSG00000027429.17	Sec23b	chr2	protein_coding	SEC23 homolog B, COPII coat complex component
known_NIR_10475	chr2	145517504	145554375	+	145517504;145519099	145519004;145554375	ES	ENSMUST00000231581.2	known	0.00	0	1.5	0	0;3	n	1.00	1	0.0	1	0;0	n	0.75	3	1.0	3	2;0	n	0.86	3	0.5	3	1;0	n	0.55	3	2.5	3	3;2	n	0.73	4	1.5	4	3;0	n	1.00	6	0.0	6	0;0	n	0.86	9	1.5	9	2;1	n	0.62	5	3.0	5	2;4	y	0.90	9	1.0	9	0;2	n	0.00	0	1.0	0	1;1	n	0.82	9	2.0	9	0;4	n	ENSMUSG00000001768.17	Rin2	chr2	protein_coding	Ras and Rab interactor 2
known_NIR_10476	chr2	145543242	145554375	+	145517504	145554375	A5SS	ENSMUST00000144661.2	known	1.00	2	0	2	0	n	0.50	1	1	1	1	n	0.50	3	3	3	3	n	0.50	3	3	3	3	n	0.40	2	3	2	3	n	0.33	2	4	2	4	n	0.40	4	6	4	6	y	0.25	3	9	3	9	y	0.29	2	5	2	5	n	0.10	1	9	1	9	n	1.00	2	0	2	0	n	0.10	1	9	1	9	n	ENSMUSG00000001768.17	Rin2	chr2	protein_coding	Ras and Rab interactor 2
known_NIR_10477	chr2	145664285	145686631	+	145664285	145664530	3pMXE	ENSMUST00000150449.2	known	0.33	2	4	2	4	n	0.25	1	3	1	3	n	0.44	4	5	4	5	n	0.62	8	5	8	5	y	0.67	8	4	8	4	y	0.73	8	3	8	3	y	0.73	8	3	8	3	y	0.57	8	6	8	6	y	0.80	4	1	4	1	n	0.64	16	9	16	9	y	0.50	4	4	4	4	n	0.75	6	2	6	2	n	ENSMUSG00000001768.17	Rin2	chr2	protein_coding	Ras and Rab interactor 2
known_NIR_10478	chr2	145664285;145664681	145664530;145686631	+	145664285	145686631	cassetteExon	ENSMUST00000110005.8	known	0.64	3.5	2	4;3	2	n	0.71	2.5	1	3;2	1	n	0.47	3.5	4	5;2	4	y	0.43	6.0	8	5;7	8	y	0.30	3.5	8	4;3	8	y	0.36	4.5	8	3;6	8	y	0.27	3.0	8	3;3	8	y	0.36	4.5	8	6;3	8	y	0.27	1.5	4	1;2	4	n	0.30	7.0	16	9;5	16	y	0.50	4.0	4	4;4	4	y	0.45	5.0	6	2;8	6	y	ENSMUSG00000001768.17	Rin2	chr2	protein_coding	Ras and Rab interactor 2
known_NIR_10479	chr2	145745282	145753617	+	145745282	145750511	A3SS&ES	ENSMUST00000110000.8	known	0.10	3	28	3	28	y	0.00	0	28	0	28	n	0.04	2	44	2	44	y	0.00	0	29	0	29	n	0.08	2	22	2	22	y	0.05	1	19	1	19	n	0.03	1	37	1	37	n	0.00	0	20	0	20	n	0.16	3	16	3	16	y	0.10	4	37	4	37	y	0.00	0	28	0	28	n	0.00	0	31	0	31	n	ENSMUSG00000002728.15	Naa20	chr2	protein_coding	N(alpha)-acetyltransferase 20, NatB catalytic subunit
known_NIR_10480	chr2	145753713	145754313	+	145753683	145754313	A5SS	ENSMUST00000150316.8	known	0.00	0	30	0	30	n	0.05	2	36	2	36	y	0.05	3	56	3	56	y	0.03	1	36	1	36	n	0.05	2	40	2	40	y	0.00	0	19	0	19	n	0.02	1	61	1	61	n	0.00	0	26	0	26	n	0.08	2	24	2	24	y	0.04	2	47	2	47	y	0.03	1	33	1	33	n	0.03	1	28	1	28	n	ENSMUSG00000002728.15	Naa20	chr2	protein_coding	N(alpha)-acetyltransferase 20, NatB catalytic subunit
known_NIR_10481	chr2	146100864	146102286	-	146090128	146102286	A3SS	ENSMUST00000109986.9	known	0.12	3	21	3	21	y	0.32	9	19	9	19	y	0.06	6	97	6	97	y	0.20	5	20	5	20	y	0.17	10	50	10	50	y	0.16	9	46	9	46	y	0.00	0	25	0	25	n	0.06	2	29	2	29	y	0.12	3	21	3	21	y	0.09	3	30	3	30	y	0.00	0	21	0	21	n	0.23	7	23	7	23	y	ENSMUSG00000037110.21	Ralgapa2	chr2	protein_coding	Ral GTPase activating protein, alpha subunit 2 (catalytic)
known_NIR_10482	chr2	146705789	146730941	+	146705789;146712766	146712686;146730941	ES	ENSMUST00000099278.9	known	0.24	6	19.5	6	13;26	y	0.10	2	18.5	2	21;16	y	0.18	7	32.0	7	37;27	y	0.15	6	35.0	6	29;41	y	0.34	13	25.0	13	22;28	y	0.17	3	15.0	3	17;13	y	0.28	12	31.5	12	35;28	y	0.05	1	20.0	1	18;22	n	0.12	3	21.5	3	22;21	y	0.23	11	36.5	11	36;37	y	0.07	2	25.0	2	27;23	y	0.12	6	42.5	6	36;49	y	ENSMUSG00000074749.11	Kiz	chr2	protein_coding	kizuna centrosomal protein
known_NIR_10483	chr2	147814934	147830719	-	147814934	147817715	5pMXE	ENSMUST00000129082.2	known	0.33	2	4	2	4	n	0.43	3	4	3	4	n	0.00	0	6	0	6	n	0.40	2	3	2	3	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.33	2	4	2	4	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.53	8	7	8	7	y	0.50	2	2	2	2	n	0.50	7	7	7	7	y	ENSMUSG00000086141.8	9030622O22Rik	chr2	lncRNA	RIKEN cDNA 9030622O22 gene
known_NIR_10484	chr2	147830785	147853171	-	147830785	147882061	A5SS	ENSMUST00000136555.8	known	1.00	15	0	15	0	n	0.78	7	2	7	2	n	1.00	4	0	4	0	n	1.00	11	0	11	0	n	0.86	12	2	12	2	y	1.00	2	0	2	0	n	0.92	11	1	11	1	n	1.00	9	0	9	0	n	1.00	7	0	7	0	n	1.00	16	0	16	0	n	1.00	10	0	10	0	n	1.00	19	0	19	0	n	ENSMUSG00000086141.8	9030622O22Rik	chr2	lncRNA	RIKEN cDNA 9030622O22 gene
known_NIR_10485	chr2	147886744	147887195	-	147886744	147887747	A5SS	ENSMUST00000109964.8	known	0.10	3	27	3	27	y	0.07	2	26	2	26	y	0.23	9	30	9	30	y	0.15	6	34	6	34	y	0.14	11	69	11	69	y	0.26	7	20	7	20	y	0.15	9	50	9	50	y	0.21	12	45	12	45	y	0.20	5	20	5	20	y	0.27	9	24	9	24	y	0.06	2	33	2	33	y	0.19	10	43	10	43	y	ENSMUSG00000037025.12	Foxa2	chr2	protein_coding	forkhead box A2
known_NIR_10486	chr2	148514755	148517202	+	148514755;148516518	148516384;148517202	ES	ENSMUST00000109961.8	known	0.89	31	4.0	31	3;5	y	0.78	21	6.0	21	7;5	y	0.85	33	6.0	33	5;7	y	0.86	35	5.5	35	0;11	n	0.88	36	5.0	36	6;4	y	0.92	24	2.0	24	3;1	n	0.92	43	3.5	43	4;3	y	0.95	20	1.0	20	0;2	n	0.90	23	2.5	23	2;3	y	0.93	39	3.0	39	1;5	n	0.87	30	4.5	30	3;6	y	0.89	32	4.0	32	4;4	y	ENSMUSG00000036992.11	Nxt1	chr2	protein_coding	NTF2-related export protein 1
known_NIR_10487	chr2	148523375	148525514	+	148523135	148525514	A5SS	ENSMUST00000028928.8	known	0.47	8	9	8	9	y	0.50	9	9	9	9	y	0.07	1	14	1	14	n	0.33	5	10	5	10	y	0.28	8	21	8	21	y	0.20	1	4	1	4	n	0.32	6	13	6	13	y	0.13	3	20	3	20	y	0.44	8	10	8	10	y	0.59	13	9	13	9	y	0.55	6	5	6	5	y	0.29	8	20	8	20	y	ENSMUSG00000027439.10	Gzf1	chr2	protein_coding	GDNF-inducible zinc finger protein 1
known_NIR_10488	chr2	148530065	148531996	+	148530091	148531996	A5SS	ENSMUST00000028928.8	known	0.00	0	28	0	28	n	0.00	0	28	0	28	n	0.00	0	37	0	37	n	0.00	0	50	0	50	n	0.04	3	78	3	78	y	0.00	0	17	0	17	n	0.00	0	66	0	66	n	0.00	0	42	0	42	n	0.00	0	44	0	44	n	0.00	0	56	0	56	n	0.00	0	52	0	52	n	0.00	0	56	0	56	n	ENSMUSG00000027439.10	Gzf1	chr2	protein_coding	GDNF-inducible zinc finger protein 1
known_NIR_10489	chr2	149960120	149961485	-	149960120	149961401	A5SS	ENSMUST00000122859.8	known	-	-	-	-	-	-	0.00	0	3	0	3	n	0.86	6	1	6	1	n	1.00	6	0	6	0	n	0.71	5	2	5	2	n	0.80	4	1	4	1	n	1.00	1	0	1	0	n	0.57	4	3	4	3	n	0.00	0	1	0	1	n	0.88	7	1	7	1	n	-	-	-	-	-	-	0.86	12	2	12	2	y	ENSMUSG00000068134.14	Zfp120	chr2	protein_coding	zinc finger protein 120
known_NIR_10490	chr2	149960120	149961745	-	149960120;149961548	149961401;149961745	ES	ENSMUST00000122859.8	known	0.00	0	3.5	0	0;7	n	0.33	2	4.0	2	3;5	y	0.29	1	2.5	1	1;4	n	0.44	4	5.0	4	0;10	n	0.47	4	4.5	4	2;7	y	0.00	0	2.5	0	1;4	n	0.71	5	2.0	5	0;4	n	0.00	0	6.5	0	3;10	n	0.44	2	2.5	2	1;4	n	0.31	2	4.5	2	1;8	n	0.44	2	2.5	2	0;5	n	0.40	4	6.0	4	2;10	y	ENSMUSG00000068134.14	Zfp120	chr2	protein_coding	zinc finger protein 120
known_NIR_10491	chr2	149960120	149961745	-	149961548	149961745	3pMXE	ENSMUST00000142792.2	known	0.00	0	7	0	7	n	0.29	2	5	2	5	n	0.20	1	4	1	4	n	0.29	4	10	4	10	y	0.36	4	7	4	7	y	0.00	0	4	0	4	n	0.56	5	4	5	4	n	0.00	0	10	0	10	n	0.33	2	4	2	4	n	0.20	2	8	2	8	y	0.29	2	5	2	5	n	0.29	4	10	4	10	y	ENSMUSG00000068134.14	Zfp120	chr2	protein_coding	zinc finger protein 120
known_NIR_10492	chr2	149960120;149961548	149961485;149961745	-	149960120	149961745	cassetteExon	ENSMUST00000109931.8	known	1.00	3.5	0	0;7	0	n	0.56	2.5	2	0;5	2	n	0.83	5.0	1	6;4	1	n	0.67	8.0	4	6;10	4	y	0.60	6.0	4	5;7	4	y	1.00	4.0	0	4;4	0	n	0.33	2.5	5	1;4	5	n	1.00	7.0	0	4;10	0	n	0.50	2.0	2	0;4	2	n	0.79	7.5	2	7;8	2	y	0.56	2.5	2	0;5	2	n	0.73	11.0	4	12;10	4	y	ENSMUSG00000068134.14	Zfp120	chr2	protein_coding	zinc finger protein 120
known_NIR_10493	chr2	15043038	15047038	-	15043038;15044653	15044544;15047038	ES	ENSMUST00000028034.15	known	0.18	1	4.5	1	5;4	n	0.25	1	3.0	1	5;1	n	0.12	1	7.0	1	10;4	n	0.31	2	4.5	2	5;4	y	0.35	4	7.5	4	11;4	y	0.00	0	1.5	0	3;0	n	0.15	1	5.5	1	6;5	n	0.43	3	4.0	3	6;2	y	0.20	1	4.0	1	5;3	n	0.80	2	0.5	2	1;0	n	0.57	2	1.5	2	1;2	n	0.22	1	3.5	1	5;2	n	ENSMUSG00000026707.16	Nsun6	chr2	protein_coding	NOL1/NOP2/Sun domain family member 6
known_NIR_10494	chr2	150431042	150431953	-	150430939	150431953	A3SS	ENSMUST00000046399.7	known	0.00	0	64	0	64	n	0.00	0	51	0	51	n	0.00	0	100	0	100	n	0.00	0	85	0	85	n	0.03	3	111	3	111	y	0.04	2	55	2	55	y	0.04	3	79	3	79	y	0.00	0	57	0	57	n	0.05	3	54	3	54	y	0.03	3	92	3	92	y	0.00	0	56	0	56	n	0.00	0	85	0	85	n	ENSMUSG00000033096.8	Apmap	chr2	protein_coding	adipocyte plasma membrane associated protein
known_NIR_10495	chr2	150436337;150441737	150441648;150442164	-	150436337	150442164	cassetteExon	ENSMUST00000046399.7	known	0.00	0.0	74	0;0	74	n	0.07	3.5	44	3;4	44	y	0.02	1.5	80	2;1	80	n	0.00	0.0	68	0;0	68	n	0.02	2.0	87	2;2	87	y	0.00	0.0	46	0;0	46	n	0.02	2.0	101	1;3	101	n	0.00	0.0	62	0;0	62	n	0.00	0.0	66	0;0	66	n	0.00	0.5	103	1;0	103	n	0.01	0.5	85	1;0	85	n	0.00	0.0	102	0;0	102	n	ENSMUSG00000033096.8	Apmap	chr2	protein_coding	adipocyte plasma membrane associated protein
known_NIR_10496	chr2	150677271	150680235	-	150677271	150679272	A5SS&ES	ENSMUST00000141899.8	known	0.00	0	87	0	87	n	0.00	0	84	0	84	n	0.00	0	63	0	63	n	0.00	0	82	0	82	n	0.01	2	149	2	149	y	0.02	1	56	1	56	n	0.00	0	147	0	147	n	0.00	0	68	0	68	n	0.01	1	88	1	88	n	0.00	0	114	0	114	n	0.00	0	100	0	100	n	0.00	0	121	0	121	n	ENSMUSG00000032046.16	Abhd12	chr2	protein_coding	abhydrolase domain containing 12
known_NIR_10497	chr2	150677271	150680235	-	150677271;150679354	150679272;150680235	ES	ENSMUST00000156641.8	known	0.00	0	88.0	0	87;89	n	0.00	0	86.0	0	84;88	n	0.00	0	60.0	0	63;57	n	0.00	0	87.5	0	82;93	n	0.01	2	146.0	2	149;143	y	0.02	1	62.0	1	56;68	n	0.00	0	134.5	0	147;122	n	0.00	0	57.5	0	68;47	n	0.01	1	80.5	1	88;73	n	0.00	0	104.5	0	114;95	n	0.00	0	95.5	0	100;91	n	0.00	0	109.0	0	121;97	n	ENSMUSG00000032046.16	Abhd12	chr2	protein_coding	abhydrolase domain containing 12
known_NIR_10498	chr2	15073010	15074648	+	15073010	15074631	A3SS	ENSMUST00000017562.13	known	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	20	0	20	n	0.00	0	6	0	6	n	0.06	1	15	1	15	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.08	2	22	2	22	y	0.00	0	7	0	7	n	0.00	0	20	0	20	n	ENSMUSG00000017418.15	Arl5b	chr2	protein_coding	ADP-ribosylation factor-like 5B
known_NIR_10499	chr2	15073010	15074669	+	15073010	15074631	A3SS	ENSMUST00000017562.13	known	0.00	0	8	0	8	n	0.50	3	3	3	3	n	0.25	4	12	4	12	y	0.19	3	13	3	13	y	0.09	2	20	2	20	y	0.14	1	6	1	6	n	0.06	1	15	1	15	n	0.11	1	8	1	8	n	0.10	1	9	1	9	n	0.12	3	22	3	22	y	0.00	0	7	0	7	n	0.13	3	20	3	20	y	ENSMUSG00000017418.15	Arl5b	chr2	protein_coding	ADP-ribosylation factor-like 5B
known_NIR_10500	chr2	151342709	151344934	+	151344380	151344934	5pMXE	ENSMUST00000156182.2	known	1.00	114	0	114	0	n	0.91	128	13	128	13	y	0.90	135	15	135	15	y	0.95	144	7	144	7	y	1.00	147	0	147	0	n	0.91	82	8	82	8	y	0.81	140	32	140	32	y	1.00	69	0	69	0	n	0.91	100	10	100	10	y	1.00	171	0	171	0	n	0.93	156	11	156	11	y	1.00	151	0	151	0	n	ENSMUSG00000027455.17	Nsfl1c	chr2	protein_coding	NSFL1 (p97) cofactor (p47)
known_NIR_10501	chr2	151345099	151347273	+	151345099	151346031	A3SS&ES	ENSMUST00000156182.2	known	0.00	0	216	0	216	n	0.01	2	224	2	224	y	0.00	1	246	1	246	n	0.00	0	260	0	260	n	0.00	0	284	0	284	n	0.00	0	127	0	127	n	0.00	0	256	0	256	n	0.01	1	166	1	166	n	0.00	0	202	0	202	n	0.00	1	316	1	316	n	0.00	0	219	0	219	n	0.00	0	240	0	240	n	ENSMUSG00000027455.17	Nsfl1c	chr2	protein_coding	NSFL1 (p97) cofactor (p47)
known_NIR_10502	chr2	151345099	151347273	+	151345099;151346123	151346031;151347273	ES	ENSMUST00000089140.13	known	0.00	0	229.5	0	216;243	n	0.01	2	226.5	2	224;229	y	0.00	1	255.5	1	246;265	n	0.00	0	259.5	0	260;259	n	0.00	0	286.5	0	284;289	n	0.00	0	129.0	0	127;131	n	0.00	0	268.0	0	256;280	n	0.01	1	145.5	1	166;125	n	0.00	0	204.0	0	202;206	n	0.00	1	322.0	1	316;328	n	0.00	0	225.5	0	219;232	n	0.00	0	251.5	0	240;263	n	ENSMUSG00000027455.17	Nsfl1c	chr2	protein_coding	NSFL1 (p97) cofactor (p47)
known_NIR_10503	chr2	151345099	151347273	+	151346123	151347273	5pMXE	ENSMUST00000134081.2	known	0.00	0	243	0	243	n	0.01	2	229	2	229	y	0.00	1	265	1	265	n	0.00	0	259	0	259	n	0.00	0	289	0	289	n	0.00	0	131	0	131	n	0.00	0	280	0	280	n	0.01	1	125	1	125	n	0.00	0	206	0	206	n	0.00	1	328	1	328	n	0.00	0	232	0	232	n	0.00	0	263	0	263	n	ENSMUSG00000027455.17	Nsfl1c	chr2	protein_coding	NSFL1 (p97) cofactor (p47)
known_NIR_10504	chr2	151384785	151399306	+	151386060	151399306	5pMXE	ENSMUST00000142271.2	known	0.98	123	2	123	2	y	1.00	146	0	146	0	n	0.98	238	6	238	6	y	0.99	150	1	150	1	n	1.00	225	0	225	0	n	0.98	129	2	129	2	y	0.99	220	3	220	3	y	1.00	99	0	99	0	n	1.00	108	0	108	0	n	0.99	146	2	146	2	y	0.99	153	1	153	1	n	1.00	161	0	161	0	n	ENSMUSG00000032966.15	Fkbp1a	chr2	protein_coding	FK506 binding protein 1a
known_NIR_10505	chr2	151384785	151399306	+	151387435	151399306	5pMXE	ENSMUST00000132614.2	known	0.98	123	3	123	3	y	1.00	146	0	146	0	n	1.00	238	0	238	0	n	1.00	150	0	150	0	n	1.00	225	0	225	0	n	1.00	129	0	129	0	n	1.00	220	0	220	0	n	1.00	99	0	99	0	n	1.00	108	0	108	0	n	1.00	146	0	146	0	n	1.00	153	0	153	0	n	1.00	161	0	161	0	n	ENSMUSG00000032966.15	Fkbp1a	chr2	protein_coding	FK506 binding protein 1a
known_NIR_10506	chr2	151401536	151402541	+	151401540	151402541	A5SS	ENSMUST00000044011.12	known	0.04	8	173	8	173	y	0.01	1	166	1	166	n	0.04	11	272	11	272	y	0.06	7	120	7	120	y	0.05	11	223	11	223	y	0.02	2	129	2	129	y	0.02	6	241	6	241	y	0.06	7	119	7	119	y	0.07	9	121	9	121	y	0.03	7	218	7	218	y	0.03	7	194	7	194	y	0.03	6	178	6	178	y	ENSMUSG00000032966.15	Fkbp1a	chr2	protein_coding	FK506 binding protein 1a
known_NIR_10507	chr2	151571596	151576142	-	151571596	151582931	A5SS	ENSMUST00000155939.8	known	1.00	84	0	84	0	n	0.99	73	1	73	1	n	1.00	74	0	74	0	n	1.00	87	0	87	0	n	0.98	84	2	84	2	y	1.00	39	0	39	0	n	1.00	71	0	71	0	n	1.00	51	0	51	0	n	1.00	79	0	79	0	n	1.00	101	0	101	0	n	0.99	67	1	67	1	n	0.99	69	1	69	1	n	ENSMUSG00000032869.16	Psmf1	chr2	protein_coding	proteasome (prosome, macropain) inhibitor subunit 1
known_NIR_10508	chr2	151571596	151577394	-	151571596;151576224	151576142;151577394	ES	ENSMUST00000042452.11	known	0.01	1	87.0	1	84;90	n	0.01	1	67.5	1	73;62	n	0.03	2	77.5	2	74;81	y	0.01	1	78.5	1	87;70	n	0.00	0	93.5	0	84;103	n	0.00	0	45.5	0	39;52	n	0.00	0	82.5	0	71;94	n	0.00	0	50.0	0	51;49	n	0.00	0	78.5	0	79;78	n	0.00	0	96.5	0	101;92	n	0.01	1	74.5	1	67;82	n	0.00	0	86.5	0	69;104	n	ENSMUSG00000032869.16	Psmf1	chr2	protein_coding	proteasome (prosome, macropain) inhibitor subunit 1
known_NIR_10509	chr2	151947867	151950909	+	151947658	151950909	A5SS	ENSMUST00000137751.2	known	0.90	46	5	46	5	y	0.93	38	3	38	3	y	0.95	142	7	142	7	y	0.96	88	4	88	4	y	0.92	83	7	83	7	y	0.96	65	3	65	3	y	0.91	86	9	86	9	y	0.86	44	7	44	7	y	0.92	46	4	46	4	y	0.94	68	4	68	4	y	0.97	56	2	56	2	y	1.00	61	0	61	0	n	ENSMUSG00000032802.9	Srxn1	chr2	protein_coding	sulfiredoxin 1 homolog (S. cerevisiae)
known_NIR_10510	chr2	152068952	152092322	+	152068911	152092322	A5SS	ENSMUST00000099224.10	known	0.02	1	45	1	45	n	0.00	0	31	0	31	n	0.04	3	80	3	80	y	0.01	1	101	1	101	n	0.01	1	77	1	77	n	0.04	2	45	2	45	y	0.00	0	62	0	62	n	0.00	0	49	0	49	n	0.00	0	51	0	51	n	0.06	5	77	5	77	y	0.02	1	43	1	43	n	0.04	3	69	3	69	y	ENSMUSG00000074698.11	Csnk2a1	chr2	protein_coding	casein kinase 2, alpha 1 polypeptide
known_NIR_10511	chr2	152135960	152146866	+	152135960;152144257	152144072;152146866	ES	ENSMUST00000028963.14	known	0.05	2	39.0	2	34;44	y	0.00	0	25.5	0	22;29	n	0.02	1	63.0	1	51;75	n	0.00	0	34.5	0	37;32	n	0.02	1	59.0	1	52;66	n	0.00	0	38.5	0	36;41	n	0.00	0	56.5	0	45;68	n	0.00	0	31.5	0	27;36	n	0.00	0	28.5	0	28;29	n	0.00	0	66.0	0	69;63	n	0.00	0	32.0	0	22;42	n	0.00	0	53.5	0	39;68	n	ENSMUSG00000027465.14	Tbc1d20	chr2	protein_coding	TBC1 domain family, member 20
known_NIR_10512	chr2	152185203	152185777	-	152185247	152185777	A3SS	ENSMUST00000040312.7	known	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.00	0	55	0	55	n	0.00	0	12	0	12	n	0.12	2	14	2	14	y	0.00	0	13	0	13	n	0.00	0	21	0	21	n	0.00	0	3	0	3	n	0.00	0	16	0	16	n	0.00	0	18	0	18	n	0.00	0	11	0	11	n	0.25	1	3	1	3	n	ENSMUSG00000032715.10	Trib3	chr2	protein_coding	tribbles pseudokinase 3
known_NIR_10513	chr2	152530668	152531764	+	152530668;152530882	152530757;152531764	ES	ENSMUST00000125366.8	known	0.01	5	485.0	5	457;513	y	0.01	7	525.5	7	469;582	y	0.01	12	1013.0	12	962;1064	y	0.00	2	427.0	2	423;431	y	0.00	3	723.5	3	677;770	y	0.01	6	617.0	6	595;639	y	0.02	9	590.5	9	536;645	y	0.01	8	561.5	8	571;552	y	0.01	6	415.0	6	415;415	y	0.01	8	608.5	8	582;635	y	0.01	8	590.5	8	552;629	y	0.01	7	534.0	7	532;536	y	ENSMUSG00000019188.17	H13	chr2	protein_coding	histocompatibility 13
known_NIR_10514	chr2	152542188	152546542	+	152542188	152545915	3pMXE	ENSMUST00000079247.4	known	0.95	786	42	786	42	y	0.94	895	58	895	58	y	0.92	1551	131	1551	131	y	0.93	685	48	685	48	y	0.92	996	84	996	84	y	0.90	802	94	802	94	y	0.91	996	93	996	93	y	0.92	746	65	746	65	y	0.93	700	54	700	54	y	0.94	986	59	986	59	y	0.95	977	55	977	55	y	0.95	879	49	879	49	y	ENSMUSG00000019188.17	H13	chr2	protein_coding	histocompatibility 13
known_NIR_10515	chr2	152542188;152546114	152545915;152546542	+	152542188	152546542	cassetteExon	ENSMUST00000125366.8	known	0.05	42.0	786	42;42	786	y	0.06	59.5	895	58;61	895	y	0.07	119.5	1551	131;108	1551	y	0.06	40.5	685	48;33	685	y	0.08	85.5	996	84;87	996	y	0.09	83.5	802	94;73	802	y	0.08	85.5	996	93;78	996	y	0.07	55.0	746	65;45	746	y	0.07	50.5	700	54;47	700	y	0.05	53.5	986	59;48	986	y	0.05	56.5	977	55;58	977	y	0.06	53.0	879	49;57	879	y	ENSMUSG00000019188.17	H13	chr2	protein_coding	histocompatibility 13
known_NIR_10516	chr2	152624202	152670367	-	152624202	152671347	A5SS	ENSMUST00000007803.12	known	0.00	0	67	0	67	n	0.00	0	90	0	90	n	0.00	0	108	0	108	n	0.00	0	70	0	70	n	0.01	1	105	1	105	n	0.02	1	55	1	55	n	0.02	2	110	2	110	y	0.01	1	67	1	67	n	0.00	0	70	0	70	n	0.00	0	105	0	105	n	0.00	0	75	0	75	n	0.01	1	74	1	74	n	ENSMUSG00000007659.19	Bcl2l1	chr2	protein_coding	BCL2-like 1
known_NIR_10517	chr2	152672022	152672107	-	152672022	152672306	A5SS	ENSMUST00000109820.5	known	0.05	1	18	1	18	n	0.00	0	25	0	25	n	0.00	0	38	0	38	n	0.00	0	27	0	27	n	0.00	0	39	0	39	n	0.00	0	21	0	21	n	0.00	0	38	0	38	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.03	1	30	1	30	n	0.13	3	20	3	20	y	0.00	0	24	0	24	n	ENSMUSG00000007659.19	Bcl2l1	chr2	protein_coding	BCL2-like 1
known_NIR_10518	chr2	152672022	152672107	-	152672022	152673523	A5SS	ENSMUST00000007803.12	known	0.50	1	1	1	1	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.05	1	20	1	20	n	0.16	3	16	3	16	y	0.00	0	10	0	10	n	ENSMUSG00000007659.19	Bcl2l1	chr2	protein_coding	BCL2-like 1
known_NIR_10519	chr2	152672022	152672306	-	152672022	152673523	A5SS	ENSMUST00000007803.12	known	0.95	18	1	18	1	n	0.81	25	6	25	6	y	0.90	38	4	38	4	y	0.75	27	9	27	9	y	0.75	39	13	39	13	y	0.70	21	9	21	9	y	0.81	38	9	38	9	y	0.64	9	5	9	5	y	0.70	14	6	14	6	y	0.60	30	20	30	20	y	0.56	20	16	20	16	y	0.71	24	10	24	10	y	ENSMUSG00000007659.19	Bcl2l1	chr2	protein_coding	BCL2-like 1
known_NIR_10520	chr2	152672040	152672306	-	152672022	152672306	A3SS	ENSMUST00000109820.5	known	0.05	1	18	1	18	n	0.29	10	25	10	25	y	0.10	4	38	4	38	y	0.21	7	27	7	27	y	0.15	7	39	7	39	y	0.36	12	21	12	21	y	0.07	3	38	3	38	y	0.47	8	9	8	9	y	0.33	7	14	7	14	y	0.19	7	30	7	30	y	0.00	0	20	0	20	n	0.27	9	24	9	24	y	ENSMUSG00000007659.19	Bcl2l1	chr2	protein_coding	BCL2-like 1
known_NIR_10521	chr2	152672040	152673523	-	152672022	152673523	A3SS	ENSMUST00000007803.12	known	0.00	0	1	0	1	n	0.25	2	6	2	6	n	0.20	1	4	1	4	n	0.31	4	9	4	9	y	0.32	6	13	6	13	y	0.25	3	9	3	9	y	0.25	3	9	3	9	y	0.17	1	5	1	5	n	0.00	0	6	0	6	n	0.00	0	20	0	20	n	0.20	4	16	4	16	y	0.09	1	10	1	10	n	ENSMUSG00000007659.19	Bcl2l1	chr2	protein_coding	BCL2-like 1
known_NIR_10522	chr2	152672040	152673523	-	152672040	152672306	5pMXE	ENSMUST00000146380.2	known	0.00	0	1	0	1	n	0.17	2	10	2	10	y	0.20	1	4	1	4	n	0.36	4	7	4	7	y	0.46	6	7	6	7	y	0.20	3	12	3	12	y	0.50	3	3	3	3	n	0.11	1	8	1	8	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	1.00	4	0	4	0	n	0.10	1	9	1	9	n	ENSMUSG00000007659.19	Bcl2l1	chr2	protein_coding	BCL2-like 1
known_NIR_10523	chr2	152856005	152857128	-	152856005	152857154	A5SS	ENSMUST00000028972.9	known	0.03	2	57	2	57	y	0.00	0	50	0	50	n	0.00	0	39	0	39	n	0.01	1	76	1	76	n	0.00	0	76	0	76	n	0.06	2	32	2	32	y	0.00	0	95	0	95	n	0.00	0	41	0	41	n	0.03	2	63	2	63	y	0.01	1	75	1	75	n	0.00	0	62	0	62	n	0.04	3	75	3	75	y	ENSMUSG00000027472.15	Pdrg1	chr2	protein_coding	p53 and DNA damage regulated 1
known_NIR_10524	chr2	152856050	152857154	-	152856005	152857154	A3SS	ENSMUST00000028972.9	known	0.00	0	57	0	57	n	0.04	2	50	2	50	y	0.03	1	39	1	39	n	0.05	4	76	4	76	y	0.08	7	76	7	76	y	0.00	0	32	0	32	n	0.03	3	95	3	95	y	0.00	0	41	0	41	n	0.00	0	63	0	63	n	0.06	5	75	5	75	y	0.03	2	62	2	62	y	0.00	0	75	0	75	n	ENSMUSG00000027472.15	Pdrg1	chr2	protein_coding	p53 and DNA damage regulated 1
known_NIR_10525	chr2	152856202	152857154	-	152856005	152857154	A3SS	ENSMUST00000028972.9	known	0.03	2	57	2	57	y	0.06	3	50	3	50	y	0.00	0	39	0	39	n	0.03	2	76	2	76	y	0.01	1	76	1	76	n	0.03	1	32	1	32	n	0.01	1	95	1	95	n	0.02	1	41	1	41	n	0.00	0	63	0	63	n	0.00	0	75	0	75	n	0.00	0	62	0	62	n	0.00	0	75	0	75	n	ENSMUSG00000027472.15	Pdrg1	chr2	protein_coding	p53 and DNA damage regulated 1
known_NIR_10526	chr2	152912644	152912745	+	152912644	152912742	A3SS	ENSMUST00000127898.9	known	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.20	2	8	2	8	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	ENSMUSG00000027474.14	Ccm2l	chr2	protein_coding	cerebral cavernous malformation 2-like
known_NIR_10527	chr2	153003491	153020806	+	153003491	153020809	A3SS	ENSMUST00000137446.8	known	0.03	1	30	1	30	n	0.12	2	14	2	14	y	0.09	4	41	4	41	y	0.08	2	23	2	23	y	0.26	10	28	10	28	y	0.21	5	19	5	19	y	0.00	0	47	0	47	n	0.12	3	21	3	21	y	0.09	2	21	2	21	y	0.00	0	27	0	27	n	0.09	3	29	3	29	y	0.05	1	20	1	20	n	ENSMUSG00000068040.11	Tm9sf4	chr2	protein_coding	transmembrane 9 superfamily member 4
known_NIR_10528	chr2	153030969	153032751	+	153030997	153032751	A5SS	ENSMUST00000137446.8	known	0.01	1	79	1	79	n	0.02	1	56	1	56	n	0.01	3	215	3	215	y	0.04	5	125	5	125	y	0.02	2	130	2	130	y	0.00	0	87	0	87	n	0.01	1	93	1	93	n	0.05	4	69	4	69	y	0.00	0	62	0	62	n	0.00	0	100	0	100	n	0.00	0	74	0	74	n	0.01	1	110	1	110	n	ENSMUSG00000068040.11	Tm9sf4	chr2	protein_coding	transmembrane 9 superfamily member 4
known_NIR_10529	chr2	153036590	153037231	+	153036329	153037231	A5SS	ENSMUST00000137446.8	known	0.01	1	68	1	68	n	0.02	1	56	1	56	n	0.00	0	174	0	174	n	0.01	1	93	1	93	n	0.00	0	130	0	130	n	0.01	1	82	1	82	n	0.03	3	91	3	91	y	0.01	1	73	1	73	n	0.00	0	62	0	62	n	0.00	0	94	0	94	n	0.00	0	59	0	59	n	0.00	0	93	0	93	n	ENSMUSG00000068040.11	Tm9sf4	chr2	protein_coding	transmembrane 9 superfamily member 4
known_NIR_10530	chr2	153037485	153040274	+	153037485	153040270	A3SS	ENSMUST00000137446.8	known	0.00	0	66	0	66	n	0.00	0	90	0	90	n	0.00	1	203	1	203	n	0.00	0	150	0	150	n	0.02	3	126	3	126	y	0.00	0	102	0	102	n	0.01	1	142	1	142	n	0.00	0	98	0	98	n	0.04	3	72	3	72	y	0.00	0	121	0	121	n	0.00	0	87	0	87	n	0.00	0	129	0	129	n	ENSMUSG00000068040.11	Tm9sf4	chr2	protein_coding	transmembrane 9 superfamily member 4
known_NIR_10531	chr2	153101712	153103121	+	153101712	153103118	A3SS	ENSMUST00000049863.12	known	0.00	0	27	0	27	n	0.00	0	22	0	22	n	0.00	0	18	0	18	n	0.00	0	34	0	34	n	0.00	0	23	0	23	n	0.00	0	32	0	32	n	0.00	0	21	0	21	n	0.00	0	26	0	26	n	0.15	3	17	3	17	y	0.00	0	21	0	21	n	0.00	0	12	0	12	n	0.04	1	23	1	23	n	ENSMUSG00000046020.14	Pofut1	chr2	protein_coding	protein O-fucosyltransferase 1
known_NIR_10532	chr2	153189959	153194109	+	153188310	153194109	A5SS	ENSMUST00000227428.2	known	0.25	2	6	2	6	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.11	2	16	2	16	y	0.22	2	7	2	7	n	0.00	0	5	0	5	n	0.11	1	8	1	8	n	0.00	0	7	0	7	n	0.09	1	10	1	10	n	0.00	0	3	0	3	n	0.43	3	4	3	4	n	ENSMUSG00000042548.15	Asxl1	chr2	protein_coding	ASXL transcriptional regulator 1
known_NIR_10533	chr2	153471166;153474182	153474108;153474514	-	153471166	153474514	cassetteExon	ENSMUST00000071852.10	known	0.08	4.5	49	4;5	49	y	0.09	4.0	42	5;3	42	y	0.08	5.5	63	7;4	63	y	0.10	6.5	61	7;6	61	y	0.10	12.0	103	15;9	103	y	0.10	3.5	31	5;2	31	y	0.02	1.5	80	2;1	80	n	0.06	2.0	30	1;3	30	n	0.17	10.0	49	6;14	49	y	0.10	9.0	84	7;11	84	y	0.15	8.0	46	7;9	46	y	0.10	8.5	73	10;7	73	y	ENSMUSG00000056941.18	Commd7	chr2	protein_coding	COMM domain containing 7
known_NIR_10534	chr2	153583574	153588176	+	153583339	153588176	A5SS	ENSMUST00000028981.9	known	0.04	1	27	1	27	n	0.09	2	20	2	20	y	0.00	0	69	0	69	n	0.00	0	37	0	37	n	0.00	0	50	0	50	n	0.00	0	26	0	26	n	0.00	0	37	0	37	n	0.00	0	26	0	26	n	0.00	0	23	0	23	n	0.00	0	43	0	43	n	0.00	0	22	0	22	n	0.00	0	30	0	30	n	ENSMUSG00000027479.15	Mapre1	chr2	protein_coding	microtubule-associated protein, RP/EB family, member 1
known_NIR_10535	chr2	154203785	154207882	-	154202687	154207882	A3SS	ENSMUST00000109731.8	known	0.40	6	9	6	9	y	0.27	3	8	3	8	y	0.22	2	7	2	7	n	0.00	0	9	0	9	n	0.17	3	15	3	15	y	0.00	0	8	0	8	n	0.23	5	17	5	17	y	0.07	1	14	1	14	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.06	1	17	1	17	n	0.00	0	15	0	15	n	ENSMUSG00000027487.12	Cdk5rap1	chr2	protein_coding	CDK5 regulatory subunit associated protein 1
known_NIR_10536	chr2	154212875	154214502	-	154212875	154214601	A5SS	ENSMUST00000109731.8	known	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.11	1	8	1	8	n	0.15	2	11	2	11	y	0.00	0	5	0	5	n	ENSMUSG00000027487.12	Cdk5rap1	chr2	protein_coding	CDK5 regulatory subunit associated protein 1
known_NIR_10537	chr2	154220124	154222594	-	154220136	154222594	A3SS	ENSMUST00000028991.7	known	1.00	52	0	52	0	n	1.00	40	0	40	0	n	1.00	25	0	25	0	n	1.00	46	0	46	0	n	1.00	49	0	49	0	n	1.00	15	0	15	0	n	1.00	46	0	46	0	n	1.00	15	0	15	0	n	1.00	33	0	33	0	n	1.00	61	0	61	0	n	0.96	49	2	49	2	y	1.00	43	0	43	0	n	ENSMUSG00000027488.13	Snta1	chr2	protein_coding	syntrophin, acidic 1
known_NIR_10538	chr2	154278556	154346473	+	154278556;154342463	154342320;154346473	ES	ENSMUST00000109725.8	known	0.29	2	5.0	2	5;5	y	0.00	0	6.0	0	7;5	n	0.12	1	7.0	1	3;11	n	0.15	1	5.5	1	7;4	n	0.00	0	6.0	0	4;8	n	0.22	1	3.5	1	0;7	n	0.00	0	6.5	0	1;12	n	0.00	0	6.5	0	4;9	n	0.00	0	5.5	0	7;4	n	0.00	0	9.0	0	4;14	n	0.00	0	5.5	0	5;6	n	0.00	0	5.5	0	5;6	n	ENSMUSG00000038533.16	Cbfa2t2	chr2	protein_coding	CBFA2/RUNX1 translocation partner 2
known_NIR_10539	chr2	154370825	154373142	+	154370825	154373145	A3SS	ENSMUST00000109725.8	known	0.62	10	6	10	6	y	0.59	10	7	10	7	y	0.86	12	2	12	2	y	0.91	10	1	10	1	n	0.72	18	7	18	7	y	1.00	5	0	5	0	n	0.59	10	7	10	7	y	0.89	16	2	16	2	y	0.90	9	1	9	1	n	0.89	16	2	16	2	y	0.56	5	4	5	4	n	0.90	19	2	19	2	y	ENSMUSG00000038533.16	Cbfa2t2	chr2	protein_coding	CBFA2/RUNX1 translocation partner 2
known_NIR_10540	chr2	154406428	154410987	-	154406428	154411409	A5SS	ENSMUST00000103145.11	known	0.67	10	5	10	5	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.82	14	3	14	3	y	0.93	14	1	14	1	n	-	-	-	-	-	-	0.83	5	1	5	1	n	0.82	9	2	9	2	y	1.00	10	0	10	0	n	0.82	9	2	9	2	y	1.00	5	0	5	0	n	0.60	3	2	3	2	n	ENSMUSG00000027490.18	E2f1	chr2	protein_coding	E2F transcription factor 1
known_NIR_10541	chr2	154437490	154438122	-	154434283	154438122	A3SS	ENSMUST00000000896.11	known	0.34	98	189	98	189	y	0.42	135	189	135	189	y	0.43	285	381	285	381	y	0.25	97	297	97	297	y	0.40	224	340	224	340	y	0.38	216	350	216	350	y	0.31	168	370	168	370	y	0.34	135	264	135	264	y	0.37	102	172	102	172	y	0.29	132	318	132	318	y	0.36	142	254	142	254	y	0.30	98	231	98	231	y	ENSMUSG00000000876.12	Pxmp4	chr2	protein_coding	peroxisomal membrane protein 4
known_NIR_10542	chr2	154633151	154699189	+	154633151;154663009	154662927;154699189	ES	ENSMUST00000129137.8	known	0.02	1	52.5	1	0;105	n	0.00	0	43.5	0	3;84	n	0.03	2	68.0	2	2;134	y	0.00	0	67.5	0	1;134	n	0.00	0	76.0	0	2;150	n	0.03	1	37.0	1	2;72	n	0.00	0	69.5	0	3;136	n	0.00	0	25.0	0	0;50	n	0.02	1	47.0	1	0;94	n	0.00	0	75.0	0	5;145	n	0.02	1	51.5	1	1;102	n	0.04	3	66.5	3	0;133	n	ENSMUSG00000027593.16	Raly	chr2	protein_coding	hnRNP-associated with lethal yellow
known_NIR_10543	chr2	154633151	154699189	+	154633468	154699189	A5SS	ENSMUST00000109701.10	known	0.05	1	19	1	19	n	0.00	0	26	0	26	n	0.04	2	45	2	45	y	0.00	0	39	0	39	n	0.00	0	43	0	43	n	0.04	1	23	1	23	n	0.00	0	35	0	35	n	0.00	0	21	0	21	n	0.06	1	17	1	17	n	0.00	0	55	0	55	n	0.03	1	39	1	39	n	0.08	3	35	3	35	y	ENSMUSG00000027593.16	Raly	chr2	protein_coding	hnRNP-associated with lethal yellow
known_NIR_10544	chr2	154633151	154699189	+	154663009	154699189	A5SS&ES	ENSMUST00000029120.14	known	0.01	1	105	1	105	n	0.00	0	84	0	84	n	0.01	2	134	2	134	y	0.00	0	134	0	134	n	0.00	0	150	0	150	n	0.01	1	72	1	72	n	0.00	0	136	0	136	n	0.00	0	50	0	50	n	0.01	1	94	1	94	n	0.00	0	145	0	145	n	0.01	1	102	1	102	n	0.02	3	133	3	133	y	ENSMUSG00000027593.16	Raly	chr2	protein_coding	hnRNP-associated with lethal yellow
known_NIR_10545	chr2	154633468	154636319	+	154633468	154699189	A3SS	ENSMUST00000109701.10	known	0.05	1	19	1	19	n	0.00	0	26	0	26	n	0.04	2	45	2	45	y	0.03	1	39	1	39	n	0.04	2	43	2	43	y	0.08	2	23	2	23	y	0.03	1	35	1	35	n	0.00	0	21	0	21	n	0.00	0	17	0	17	n	0.04	2	55	2	55	y	0.03	1	39	1	39	n	0.10	4	35	4	35	y	ENSMUSG00000027593.16	Raly	chr2	protein_coding	hnRNP-associated with lethal yellow
known_NIR_10546	chr2	154633468	154662927	+	154633151	154662927	A5SS	ENSMUST00000129137.8	known	1.00	82	0	82	0	n	0.94	49	3	49	3	y	0.98	114	2	114	2	y	0.99	79	1	79	1	n	0.98	116	2	116	2	y	0.96	50	2	50	2	y	0.97	102	3	102	3	y	1.00	50	0	50	0	n	1.00	79	0	79	0	n	0.95	105	5	105	5	y	0.99	88	1	88	1	n	1.00	91	0	91	0	n	ENSMUSG00000027593.16	Raly	chr2	protein_coding	hnRNP-associated with lethal yellow
known_NIR_10547	chr2	154633468	154699189	+	154663009	154699189	A5SS&ES	ENSMUST00000129137.8	known	0.15	19	105	19	105	y	0.24	26	84	26	84	y	0.25	45	134	45	134	y	0.23	39	134	39	134	y	0.22	43	150	43	150	y	0.24	23	72	23	72	y	0.20	35	136	35	136	y	0.30	21	50	21	50	y	0.15	17	94	17	94	y	0.28	55	145	55	145	y	0.28	39	102	39	102	y	0.21	35	133	35	133	y	ENSMUSG00000027593.16	Raly	chr2	protein_coding	hnRNP-associated with lethal yellow
known_NIR_10548	chr2	154633468;154636387	154636319;154662927	+	154633468	154662927	cassetteExon	ENSMUST00000029120.14	known	0.01	0.5	82	1;0	82	n	0.00	0.0	49	0;0	49	n	0.03	3.0	114	2;4	114	y	0.01	0.5	79	1;0	79	n	0.02	2.0	116	2;2	116	y	0.02	1.0	50	2;0	50	n	0.02	2.0	102	1;3	102	n	0.00	0.0	50	0;0	50	n	0.01	1.0	79	0;2	79	n	0.01	1.5	105	2;1	105	n	0.01	1.0	88	1;1	88	n	0.04	3.5	91	4;3	91	y	ENSMUSG00000027593.16	Raly	chr2	protein_coding	hnRNP-associated with lethal yellow
known_NIR_10549	chr2	154633468;154663009	154662927;154699189	+	154633468	154699189	cassetteExon	ENSMUST00000109701.10	known	0.83	93.5	19	82;105	19	y	0.72	66.5	26	49;84	26	y	0.73	124.0	45	114;134	45	y	0.73	106.5	39	79;134	39	y	0.76	133.0	43	116;150	43	y	0.73	61.0	23	50;72	23	y	0.77	119.0	35	102;136	35	y	0.70	50.0	21	50;50	21	y	0.84	86.5	17	79;94	17	y	0.69	125.0	55	105;145	55	y	0.71	95.0	39	88;102	39	y	0.76	112.0	35	91;133	35	y	ENSMUSG00000027593.16	Raly	chr2	protein_coding	hnRNP-associated with lethal yellow
known_NIR_10550	chr2	154701670;154701878	154701831;154703760	+	154701670	154703760	cassetteExon	ENSMUST00000109701.10	known	0.08	14.5	161	11;18	161	y	0.08	12.0	130	15;9	130	y	0.09	19.5	209	18;21	209	y	0.11	16.0	136	14;18	136	y	0.09	19.0	194	27;11	194	y	0.15	16.5	97	20;13	97	y	0.10	18.5	167	20;17	167	y	0.08	8.5	94	10;7	94	y	0.15	19.0	110	21;17	110	y	0.11	25.0	198	26;24	198	y	0.10	17.0	149	19;15	149	y	0.09	15.5	157	19;12	157	y	ENSMUSG00000027593.16	Raly	chr2	protein_coding	hnRNP-associated with lethal yellow
known_NIR_10551	chr2	154730280	154734029	-	154730280	154734610	A5SS	ENSMUST00000099173.11	known	0.02	3	193	3	193	y	0.00	0	131	0	131	n	0.00	0	406	0	406	n	0.00	0	222	0	222	n	0.00	0	271	0	271	n	0.00	0	149	0	149	n	0.00	1	278	1	278	n	0.00	0	153	0	153	n	0.01	1	172	1	172	n	0.00	0	231	0	231	n	0.00	1	215	1	215	n	0.00	0	234	0	234	n	ENSMUSG00000074656.13	Eif2s2	chr2	protein_coding	eukaryotic translation initiation factor 2, subunit 2 (beta)
known_NIR_10552	chr2	154909282	154910748	-	154909318	154910748	A3SS	ENSMUST00000054607.16	known	0.00	8	3564	8	3564	y	0.00	4	2625	4	2625	y	0.00	4	2961	4	2961	y	0.00	8	5049	8	5049	y	0.00	13	5236	13	5236	y	0.00	5	1944	5	1944	y	0.00	6	4573	6	4573	y	0.00	1	2332	1	2332	n	0.00	4	3053	4	3053	y	0.00	5	4389	5	4389	y	0.00	8	3665	8	3665	y	0.00	5	5218	5	5218	y	ENSMUSG00000027597.16	Ahcy	chr2	protein_coding	S-adenosylhomocysteine hydrolase
known_NIR_10553	chr2	154980192	155005313	+	154980192;154999895	154999694;155005313	ES	ENSMUST00000155360.8	known	0.65	15	8.0	15	8;8	y	0.88	11	1.5	11	3;0	n	0.77	22	6.5	22	10;3	y	0.70	20	8.5	20	13;4	y	0.64	21	12.0	21	17;7	y	0.91	10	1.0	10	1;1	n	0.89	25	3.0	25	3;3	y	0.74	14	5.0	14	6;4	y	0.85	22	4.0	22	5;3	y	0.85	29	5.0	29	4;6	y	0.82	14	3.0	14	3;3	y	0.75	26	8.5	26	10;7	y	ENSMUSG00000027598.17	Itch	chr2	protein_coding	itchy, E3 ubiquitin protein ligase
known_NIR_10554	chr2	155044199	155044513	+	155044199	155045201	A3SS	ENSMUST00000029126.15	known	0.02	1	43	1	43	n	0.00	0	33	0	33	n	0.00	0	43	0	43	n	0.00	0	60	0	60	n	0.02	2	91	2	91	y	0.00	0	32	0	32	n	0.00	0	55	0	55	n	0.00	0	39	0	39	n	0.00	0	36	0	36	n	0.00	0	63	0	63	n	0.00	0	51	0	51	n	0.00	0	78	0	78	n	ENSMUSG00000027598.17	Itch	chr2	protein_coding	itchy, E3 ubiquitin protein ligase
known_NIR_10555	chr2	155078537	155084651	+	155078537	155084655	A3SS	ENSMUST00000054912.15	known	0.98	221	5	221	5	y	0.99	219	2	219	2	y	0.98	206	5	206	5	y	0.98	218	4	218	4	y	0.98	262	6	262	6	y	1.00	117	0	117	0	n	0.99	317	4	317	4	y	1.00	125	0	125	0	n	0.97	187	5	187	5	y	0.99	318	4	318	4	y	0.97	234	7	234	7	y	0.99	224	2	224	2	y	ENSMUSG00000047459.15	Dynlrb1	chr2	protein_coding	dynein light chain roadblock-type 1
known_NIR_10556	chr2	155078856	155084651	+	155078537	155084651	A5SS	ENSMUST00000109682.9	known	0.05	11	221	11	221	y	0.08	19	219	19	219	y	0.06	12	206	12	206	y	0.10	25	218	25	218	y	0.06	18	262	18	262	y	0.04	5	117	5	117	y	0.06	22	317	22	317	y	0.05	7	125	7	125	y	0.09	19	187	19	187	y	0.05	16	318	16	318	y	0.06	16	234	16	234	y	0.06	14	224	14	224	y	ENSMUSG00000047459.15	Dynlrb1	chr2	protein_coding	dynein light chain roadblock-type 1
known_NIR_10557	chr2	155078860	155084651	+	155078537	155084651	A5SS	ENSMUST00000109682.9	known	0.05	12	221	12	221	y	0.03	6	219	6	219	y	0.04	9	206	9	206	y	0.03	7	218	7	218	y	0.03	9	262	9	262	y	0.06	8	117	8	117	y	0.03	11	317	11	317	y	0.01	1	125	1	125	n	0.04	8	187	8	187	y	0.02	6	318	6	318	y	0.04	10	234	10	234	y	0.03	8	224	8	224	y	ENSMUSG00000047459.15	Dynlrb1	chr2	protein_coding	dynein light chain roadblock-type 1
known_NIR_10558	chr2	155078860	155084651	+	155078856	155084651	A5SS	ENSMUST00000150602.2	known	0.52	12	11	12	11	y	0.24	6	19	6	19	y	0.43	9	12	9	12	y	0.22	7	25	7	25	y	0.33	9	18	9	18	y	0.62	8	5	8	5	y	0.33	11	22	11	22	y	0.12	1	7	1	7	n	0.30	8	19	8	19	y	0.27	6	16	6	16	y	0.38	10	16	10	16	y	0.36	8	14	8	14	y	ENSMUSG00000047459.15	Dynlrb1	chr2	protein_coding	dynein light chain roadblock-type 1
known_NIR_10559	chr2	155223937	155227210	+	155223112	155227210	A5SS	ENSMUST00000151466.8	known	1.00	127	0	127	0	n	1.00	90	0	90	0	n	1.00	173	0	173	0	n	1.00	160	0	160	0	n	1.00	235	0	235	0	n	1.00	144	0	144	0	n	0.99	146	1	146	1	n	0.99	187	2	187	2	y	1.00	52	0	52	0	n	1.00	158	0	158	0	n	1.00	92	0	92	0	n	1.00	84	0	84	0	n	ENSMUSG00000038375.16	Trp53inp2	chr2	protein_coding	transformation related protein 53 inducible nuclear protein 2
known_NIR_10560	chr2	155224849	155227210	+	155223112	155227210	A5SS	ENSMUST00000151466.8	known	1.00	7	0	7	0	n	1.00	14	0	14	0	n	1.00	41	0	41	0	n	1.00	24	0	24	0	n	1.00	41	0	41	0	n	1.00	33	0	33	0	n	0.97	32	1	32	1	n	0.94	34	2	34	2	y	1.00	15	0	15	0	n	1.00	29	0	29	0	n	1.00	7	0	7	0	n	1.00	7	0	7	0	n	ENSMUSG00000038375.16	Trp53inp2	chr2	protein_coding	transformation related protein 53 inducible nuclear protein 2
known_NIR_10561	chr2	155224849	155227210	+	155223937	155227210	A5SS	ENSMUST00000043237.14	known	0.05	7	127	7	127	y	0.13	14	90	14	90	y	0.19	41	173	41	173	y	0.13	24	160	24	160	y	0.15	41	235	41	235	y	0.19	33	144	33	144	y	0.18	32	146	32	146	y	0.15	34	187	34	187	y	0.22	15	52	15	52	y	0.16	29	158	29	158	y	0.07	7	92	7	92	y	0.08	7	84	7	84	y	ENSMUSG00000038375.16	Trp53inp2	chr2	protein_coding	transformation related protein 53 inducible nuclear protein 2
known_NIR_10562	chr2	155227384	155227921	+	155227384	155227801	A3SS	ENSMUST00000151466.8	known	0.04	6	150	6	150	y	0.06	7	108	7	108	y	0.09	21	205	21	205	y	0.07	18	239	18	239	y	0.08	24	278	24	278	y	0.11	24	189	24	189	y	0.08	20	238	20	238	y	0.10	25	232	25	232	y	0.08	7	79	7	79	y	0.10	22	190	22	190	y	0.08	9	108	9	108	y	0.13	15	100	15	100	y	ENSMUSG00000038375.16	Trp53inp2	chr2	protein_coding	transformation related protein 53 inducible nuclear protein 2
known_NIR_10563	chr2	155392389;155393148	155393110;155397774	+	155392389	155397774	cassetteExon	ENSMUST00000029135.15	known	0.02	3.0	140	4;2	140	y	0.01	1.0	88	0;2	88	n	0.04	1.5	40	1;2	40	n	0.03	5.5	175	7;4	175	y	0.02	4.5	195	4;5	195	y	0.01	0.5	55	0;1	55	n	0.09	17.0	164	18;16	164	y	0.01	1.0	83	0;2	83	n	0.03	7.0	208	6;8	208	y	0.04	11.5	297	8;15	297	y	0.02	3.5	224	5;2	224	y	0.03	8.0	266	8;8	266	y	ENSMUSG00000027605.19	Acss2	chr2	protein_coding	acyl-CoA synthetase short-chain family member 2
known_NIR_10564	chr2	155397911	155398698	+	155397911;155398423	155398253;155398698	ES	ENSMUST00000029135.15	known	0.00	0	131.0	0	111;151	n	0.04	3	68.0	3	58;78	y	0.00	0	39.5	0	31;48	n	0.00	0	169.0	0	130;208	n	0.00	0	179.0	0	151;207	n	0.00	0	55.5	0	42;69	n	0.01	1	163.5	1	137;190	n	0.00	0	51.0	0	38;64	n	0.00	0	223.0	0	185;261	n	0.01	3	267.0	3	213;321	y	0.00	1	199.5	1	166;233	n	0.00	0	229.0	0	191;267	n	ENSMUSG00000027605.19	Acss2	chr2	protein_coding	acyl-CoA synthetase short-chain family member 2
known_NIR_10565	chr2	155408804	155409703	-	155408804	155409613	A5SS	ENSMUST00000079691.13	known	0.00	0	148	0	148	n	0.00	0	113	0	113	n	0.05	10	200	10	200	y	0.00	0	166	0	166	n	0.02	5	248	5	248	y	0.00	0	84	0	84	n	0.00	0	168	0	168	n	0.04	4	110	4	110	y	0.00	0	125	0	125	n	0.00	0	191	0	191	n	0.00	0	172	0	172	n	0.00	0	232	0	232	n	ENSMUSG00000027610.18	Gss	chr2	protein_coding	glutathione synthetase
known_NIR_10566	chr2	155418891	155419442	-	155415095	155419442	A3SS	ENSMUST00000079691.13	known	0.01	2	217	2	217	y	0.00	1	204	1	204	n	0.00	0	319	0	319	n	0.00	0	271	0	271	n	0.00	1	325	1	325	n	0.01	1	113	1	113	n	0.00	0	241	0	241	n	0.00	0	147	0	147	n	0.00	0	183	0	183	n	0.00	0	227	0	227	n	0.01	2	174	2	174	y	0.00	0	343	0	343	n	ENSMUSG00000027610.18	Gss	chr2	protein_coding	glutathione synthetase
known_NIR_10567	chr2	155423953	155434614	-	155423953	155429362	5pMXE	ENSMUST00000157008.8	known	0.03	4	121	4	121	y	0.04	4	107	4	107	y	0.05	10	209	10	209	y	0.03	5	158	5	158	y	0.01	3	227	3	227	y	0.06	6	88	6	88	y	0.02	3	172	3	172	y	0.01	1	78	1	78	n	0.03	3	100	3	100	y	0.01	3	202	3	202	y	0.01	2	151	2	151	y	0.02	5	227	5	227	y	ENSMUSG00000027610.18	Gss	chr2	protein_coding	glutathione synthetase
known_NIR_10568	chr2	155423953	155434614	-	155423953;155429496	155429362;155434614	ES	ENSMUST00000079691.13	known	0.05	4	84.5	4	121;48	y	0.05	4	83.0	4	107;59	y	0.06	10	162.5	10	209;116	y	0.04	5	116.0	5	158;74	y	0.02	3	155.0	3	227;83	y	0.08	6	73.5	6	88;59	y	0.02	3	122.5	3	172;73	y	0.02	1	53.0	1	78;28	n	0.04	3	72.0	3	100;44	y	0.02	3	142.5	3	202;83	y	0.02	2	109.0	2	151;67	y	0.03	5	160.0	5	227;93	y	ENSMUSG00000027610.18	Gss	chr2	protein_coding	glutathione synthetase
known_NIR_10569	chr2	155485388	155486848	-	155485370	155486848	A3SS	ENSMUST00000041059.12	known	0.00	0	190	0	190	n	0.00	0	160	0	160	n	0.01	2	233	2	233	y	0.00	1	226	1	226	n	0.00	0	250	0	250	n	0.00	0	114	0	114	n	0.00	0	229	0	229	n	0.00	0	153	0	153	n	0.00	0	156	0	156	n	0.00	0	259	0	259	n	0.00	0	171	0	171	n	0.00	1	219	1	219	n	ENSMUSG00000038324.14	Trpc4ap	chr2	protein_coding	transient receptor potential cation channel, subfamily C, member 4 associated protein
known_NIR_10570	chr2	155486979	155495413	-	155486979;155492481	155492339;155495413	ES	ENSMUST00000103140.5	known	0.02	1	58.5	1	112;5	n	0.00	0	49.0	0	95;3	n	0.01	1	83.0	1	153;13	n	0.02	2	91.0	2	177;5	y	0.00	0	83.5	0	156;11	n	0.00	0	41.0	0	79;3	n	0.00	0	82.0	0	161;3	n	0.00	0	53.0	0	104;2	n	0.00	0	54.5	0	106;3	n	0.00	0	89.0	0	170;8	n	0.00	0	64.5	0	123;6	n	0.00	0	79.5	0	154;5	n	ENSMUSG00000038324.14	Trpc4ap	chr2	protein_coding	transient receptor potential cation channel, subfamily C, member 4 associated protein
known_NIR_10571	chr2	155486979	155495413	-	155486979;155492505	155492339;155495413	ES	ENSMUST00000041059.12	known	0.01	1	104.0	1	112;96	n	0.00	0	95.0	0	95;95	n	0.01	1	147.0	1	153;141	n	0.01	2	150.0	2	177;123	y	0.00	0	158.0	0	156;160	n	0.00	0	83.5	0	79;88	n	0.00	0	160.0	0	161;159	n	0.00	0	86.0	0	104;68	n	0.00	0	111.0	0	106;116	n	0.00	0	165.5	0	170;161	n	0.00	0	117.0	0	123;111	n	0.00	0	151.0	0	154;148	n	ENSMUSG00000038324.14	Trpc4ap	chr2	protein_coding	transient receptor potential cation channel, subfamily C, member 4 associated protein
known_NIR_10572	chr2	155492481	155495413	-	155492505	155495413	A3SS	ENSMUST00000041059.12	known	0.05	5	96	5	96	y	0.03	3	95	3	95	y	0.08	13	141	13	141	y	0.04	5	123	5	123	y	0.06	11	160	11	160	y	0.03	3	88	3	88	y	0.02	3	159	3	159	y	0.03	2	68	2	68	y	0.03	3	116	3	116	y	0.05	8	161	8	161	y	0.05	6	111	6	111	y	0.03	5	148	5	148	y	ENSMUSG00000038324.14	Trpc4ap	chr2	protein_coding	transient receptor potential cation channel, subfamily C, member 4 associated protein
known_NIR_10573	chr2	155515038	155533751	-	155515038	155534059	A5SS	ENSMUST00000041059.12	known	0.00	0	73	0	73	n	0.00	0	34	0	34	n	0.03	2	76	2	76	y	0.00	0	99	0	99	n	0.02	2	117	2	117	y	0.00	0	56	0	56	n	0.00	0	68	0	68	n	0.00	0	67	0	67	n	0.00	0	46	0	46	n	0.00	0	84	0	84	n	0.02	1	61	1	61	n	0.00	0	97	0	97	n	ENSMUSG00000038324.14	Trpc4ap	chr2	protein_coding	transient receptor potential cation channel, subfamily C, member 4 associated protein
known_NIR_10574	chr2	155552888	155554632	-	155552888	155555258	A5SS	ENSMUST00000040833.5	known	0.02	4	207	4	207	y	0.03	9	265	9	265	y	0.02	19	817	19	817	y	0.04	8	213	8	213	y	0.03	12	386	12	386	y	0.02	10	472	10	472	y	0.02	6	326	6	326	y	0.02	9	421	9	421	y	0.02	4	244	4	244	y	0.02	7	309	7	309	y	0.03	7	255	7	255	y	0.03	8	277	8	277	y	ENSMUSG00000038312.11	Edem2	chr2	protein_coding	ER degradation enhancer, mannosidase alpha-like 2
known_NIR_10575	chr2	155552888	155555245	-	155552888	155555258	A5SS	ENSMUST00000040833.5	known	0.00	0	207	0	207	n	0.00	0	265	0	265	n	0.00	0	817	0	817	n	0.00	0	213	0	213	n	0.00	0	386	0	386	n	0.00	0	472	0	472	n	0.01	2	326	2	326	y	0.00	0	421	0	421	n	0.00	0	244	0	244	n	0.00	0	309	0	309	n	0.00	0	255	0	255	n	0.00	0	277	0	277	n	ENSMUSG00000038312.11	Edem2	chr2	protein_coding	ER degradation enhancer, mannosidase alpha-like 2
known_NIR_10576	chr2	155668130	155668566	-	155668130	155668247	A5SS	ENSMUST00000029142.15	known	0.00	0	209	0	209	n	0.00	1	248	1	248	n	0.00	0	600	0	600	n	0.03	6	223	6	223	y	0.01	2	316	2	316	y	0.00	1	211	1	211	n	0.00	0	283	0	283	n	0.00	1	228	1	228	n	0.01	1	165	1	165	n	0.00	0	247	0	247	n	0.01	1	178	1	178	n	0.00	0	265	0	265	n	ENSMUSG00000027613.16	Eif6	chr2	protein_coding	eukaryotic translation initiation factor 6
known_NIR_10577	chr2	155693392	155729029	-	155693392;155700109	155700032;155729029	ES	ENSMUST00000136933.8	known	0.00	0	45.5	0	60;31	n	0.00	0	30.0	0	39;21	n	0.00	0	35.0	0	47;23	n	0.00	0	73.0	0	101;45	n	0.00	0	49.0	0	62;36	n	0.00	0	23.5	0	27;20	n	0.04	2	48.0	2	64;32	y	0.00	0	24.0	0	30;18	n	0.00	0	41.0	0	54;28	n	0.04	3	72.0	3	93;51	y	0.00	0	49.5	0	71;28	n	0.00	0	51.5	0	74;29	n	ENSMUSG00000005882.19	Uqcc1	chr2	protein_coding	ubiquinol-cytochrome c reductase complex assembly factor 1
known_NIR_10578	chr2	155693392	155729029	-	155700109	155729029	3pMXE	ENSMUST00000141501.8	known	0.00	0	31	0	31	n	0.00	0	21	0	21	n	0.00	0	23	0	23	n	0.00	0	45	0	45	n	0.00	0	36	0	36	n	0.00	0	20	0	20	n	0.06	2	32	2	32	y	0.00	0	18	0	18	n	0.00	0	28	0	28	n	0.06	3	51	3	51	y	0.00	0	28	0	28	n	0.00	0	29	0	29	n	ENSMUSG00000005882.19	Uqcc1	chr2	protein_coding	ubiquinol-cytochrome c reductase complex assembly factor 1
known_NIR_10579	chr2	155752384	155753661	-	155752387	155753661	A3SS	ENSMUST00000136933.8	known	1.00	61	0	61	0	n	0.96	43	2	43	2	y	0.93	43	3	43	3	y	1.00	84	0	84	0	n	0.99	82	1	82	1	n	0.97	32	1	32	1	n	0.96	100	4	100	4	y	0.93	37	3	37	3	y	0.98	53	1	53	1	n	0.98	81	2	81	2	y	0.95	57	3	57	3	y	0.98	89	2	89	2	y	ENSMUSG00000005882.19	Uqcc1	chr2	protein_coding	ubiquinol-cytochrome c reductase complex assembly factor 1
known_NIR_10580	chr2	155763645	155771933	-	155763647	155771933	A3SS	ENSMUST00000136933.8	known	0.00	0	31	0	31	n	0.05	1	20	1	20	n	0.00	0	32	0	32	n	0.08	4	47	4	47	y	0.00	0	35	0	35	n	0.00	0	25	0	25	n	0.00	0	58	0	58	n	0.05	1	20	1	20	n	0.00	0	46	0	46	n	0.00	0	62	0	62	n	0.00	0	39	0	39	n	0.02	1	47	1	47	n	ENSMUSG00000005882.19	Uqcc1	chr2	protein_coding	ubiquinol-cytochrome c reductase complex assembly factor 1
known_NIR_10581	chr2	155798577	155803792	+	155798582	155803792	A5SS	ENSMUST00000149905.8	known	1.00	3	0	3	0	n	0.75	3	1	3	1	n	0.67	4	2	4	2	n	-	-	-	-	-	-	0.29	2	5	2	5	n	0.00	0	3	0	3	n	0.50	2	2	2	2	n	1.00	3	0	3	0	n	0.29	2	5	2	5	n	0.42	5	7	5	7	y	0.67	2	1	2	1	n	0.80	4	1	4	1	n	ENSMUSG00000038241.17	Cep250	chr2	protein_coding	centrosomal protein 250
known_NIR_10582	chr2	155853326;155857311	155857297;155857909	+	155853326	155857909	cassetteExon	ENSMUST00000006035.13	known	0.00	0.5	349	1;0	349	n	0.00	0.0	335	0;0	335	n	0.01	2.0	285	2;2	285	y	0.00	0.0	360	0;0	360	n	0.00	0.5	406	1;0	406	n	0.00	0.0	209	0;0	209	n	0.00	0.0	433	0;0	433	n	0.00	0.0	232	0;0	232	n	0.00	0.0	303	0;0	303	n	0.00	0.0	464	0;0	464	n	0.00	1.0	409	1;1	409	n	0.00	1.0	403	1;1	403	n	ENSMUSG00000005881.14	Ergic3	chr2	protein_coding	ERGIC and golgi 3
known_NIR_10583	chr2	155857940	155858608	+	155857940	155858626	A3SS	ENSMUST00000006035.13	known	0.00	0	343	0	343	n	0.00	1	380	1	380	n	0.00	1	297	1	297	n	0.00	0	402	0	402	n	0.01	3	455	3	455	y	0.00	0	208	0	208	n	0.00	0	465	0	465	n	0.00	0	217	0	217	n	0.00	0	341	0	341	n	0.01	3	508	3	508	y	0.00	1	421	1	421	n	0.00	1	431	1	431	n	ENSMUSG00000005881.14	Ergic3	chr2	protein_coding	ERGIC and golgi 3
known_NIR_10584	chr2	155915912	155916096	-	155915955	155916096	A3SS	ENSMUST00000142975.8	known	0.00	0	50	0	50	n	0.00	0	43	0	43	n	0.00	0	65	0	65	n	0.00	0	51	0	51	n	0.03	2	76	2	76	y	0.00	0	37	0	37	n	0.00	0	59	0	59	n	0.02	1	47	1	47	n	0.00	0	38	0	38	n	0.00	0	70	0	70	n	0.00	0	44	0	44	n	0.04	3	65	3	65	y	ENSMUSG00000074643.13	Cpne1	chr2	protein_coding	copine I
known_NIR_10585	chr2	155921384	155938746	-	155921384	155953706	A5SS	ENSMUST00000142975.8	known	0.06	1	16	1	16	n	0.15	2	11	2	11	y	0.00	0	39	0	39	n	0.00	0	20	0	20	n	0.00	0	29	0	29	n	0.00	0	20	0	20	n	0.00	0	17	0	17	n	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.00	0	25	0	25	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	ENSMUSG00000074643.13	Cpne1	chr2	protein_coding	copine I
known_NIR_10586	chr2	155921384	155940150	-	155921384	155953706	A5SS	ENSMUST00000142975.8	known	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.07	3	39	3	39	y	0.09	2	20	2	20	y	0.06	2	29	2	29	y	0.00	0	20	0	20	n	0.00	0	17	0	17	n	0.11	2	16	2	16	y	0.11	1	8	1	8	n	0.00	0	25	0	25	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	ENSMUSG00000074643.13	Cpne1	chr2	protein_coding	copine I
known_NIR_10587	chr2	155921384	155945269	-	155940292	155945269	3pMXE	ENSMUST00000059647.12	known	-	-	-	-	-	-	0.38	3	5	3	5	n	0.50	9	9	9	9	y	0.36	5	9	5	9	y	0.50	8	8	8	8	y	0.50	2	2	2	2	n	0.56	9	7	9	7	y	0.44	4	5	4	5	n	0.29	2	5	2	5	n	0.27	4	11	4	11	y	0.33	2	4	2	4	n	0.60	6	4	6	4	y	ENSMUSG00000089824.11	Rbm12	chr2	protein_coding	RNA binding motif protein 12
known_NIR_10588	chr2	155921384	155953706	-	155921384;155945349	155945269;155953706	ES	ENSMUST00000184265.8	known	0.91	16	1.5	16	0;3	n	0.85	11	2.0	11	3;1	n	0.80	39	10.0	39	9;11	y	0.78	20	5.5	20	5;6	y	0.78	29	8.0	29	8;8	y	0.85	20	3.5	20	2;5	y	0.64	17	9.5	17	9;10	y	0.80	16	4.0	16	4;4	y	0.80	8	2.0	8	2;2	y	0.86	25	4.0	25	4;4	y	0.75	9	3.0	9	2;4	y	0.77	15	4.5	15	6;3	y	ENSMUSG00000074643.13	Cpne1	chr2	protein_coding	copine I
known_NIR_10589	chr2	155921384	155953748	-	155921384	155953706	A5SS	ENSMUST00000142975.8	known	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.00	0	39	0	39	n	0.00	0	20	0	20	n	0.00	0	29	0	29	n	0.00	0	20	0	20	n	0.00	0	17	0	17	n	0.00	0	16	0	16	n	0.27	3	8	3	8	y	0.04	1	25	1	25	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	ENSMUSG00000074643.13	Cpne1	chr2	protein_coding	copine I
known_NIR_10590	chr2	155921384;155940292	155940150;155945269	-	155921384	155945269	cassetteExon	ENSMUST00000184265.8	known	-	-	-	-	-	-	0.45	2.5	3	0;5	3	n	0.40	6.0	9	3;9	9	y	0.52	5.5	5	2;9	5	y	0.38	5.0	8	2;8	8	y	0.33	1.0	2	0;2	2	n	0.28	3.5	9	0;7	9	n	0.47	3.5	4	2;5	4	y	0.60	3.0	2	1;5	2	n	0.58	5.5	4	0;11	4	n	0.50	2.0	2	0;4	2	n	0.25	2.0	6	0;4	6	n	ENSMUSG00000074643.13	Cpne1	chr2	protein_coding	copine I
known_NIR_10591	chr2	155921384;155945317	155945269;155953706	-	155921384	155953706	cassetteExon	ENSMUST00000142975.8	known	0.09	1.5	16	0;3	16	n	0.27	4.0	11	3;5	11	y	0.18	8.5	39	9;8	39	y	0.17	4.0	20	5;3	20	y	0.18	6.5	29	8;5	29	y	0.13	3.0	20	2;4	20	y	0.31	7.5	17	9;6	17	y	0.18	3.5	16	4;3	16	y	0.16	1.5	8	2;1	8	n	0.17	5.0	25	4;6	25	y	0.25	3.0	9	2;4	9	y	0.35	8.0	15	6;10	15	y	ENSMUSG00000074643.13	Cpne1	chr2	protein_coding	copine I
known_NIR_10592	chr2	155945317	155953706	-	155945349	155953706	A3SS	ENSMUST00000184265.8	known	0.50	3	3	3	3	n	0.83	5	1	5	1	n	0.42	8	11	8	11	y	0.33	3	6	3	6	n	0.38	5	8	5	8	y	0.44	4	5	4	5	n	0.38	6	10	6	10	y	0.43	3	4	3	4	n	0.33	1	2	1	2	n	0.60	6	4	6	4	y	0.50	4	4	4	4	n	0.77	10	3	10	3	y	ENSMUSG00000074643.13	Cpne1	chr2	protein_coding	copine I
known_NIR_10593	chr2	155968254	155968931	-	155968322	155968931	A3SS	ENSMUST00000162612.8	known	0.00	0	174	0	174	n	0.00	0	170	0	170	n	0.00	0	137	0	137	n	0.00	0	167	0	167	n	0.00	0	219	0	219	n	0.00	0	103	0	103	n	0.00	0	214	0	214	n	0.00	0	94	0	94	n	0.00	0	131	0	131	n	0.00	0	272	0	272	n	0.01	2	194	2	194	y	0.00	0	198	0	198	n	ENSMUSG00000098950.8	Gm28036	chr2	protein_coding	predicted gene, 28036
known_NIR_10594	chr2	155986200	155986365	+	155986200	155986379	A3SS	ENSMUST00000088610.11	known	0.08	29	326	29	326	y	0.07	30	381	30	381	y	0.04	17	402	17	402	y	0.05	20	350	20	350	y	0.03	16	487	16	487	y	0.04	12	262	12	262	y	0.04	21	470	21	470	y	0.04	11	235	11	235	y	0.04	14	332	14	332	y	0.06	27	431	27	431	y	0.04	17	421	17	421	y	0.04	18	397	18	397	y	ENSMUSG00000067847.14	Romo1	chr2	protein_coding	reactive oxygen species modulator 1
known_NIR_10595	chr2	155992736;155994433	155994383;155996159	-	155992736	155996159	cassetteExon	ENSMUST00000109587.9	known	0.01	2.0	190	4;0	190	n	0.02	3.0	162	3;3	162	y	0.00	0.5	254	0;1	254	n	0.01	3.0	228	4;2	228	y	0.01	2.0	281	2;2	281	y	0.01	1.0	129	0;2	129	n	0.01	3.0	245	4;2	245	y	0.01	1.0	114	0;2	114	n	0.00	0.5	160	0;1	160	n	0.01	1.5	245	1;2	245	n	0.00	0.0	235	0;0	235	n	0.00	0.0	249	0;0	249	n	ENSMUSG00000027620.17	Rbm39	chr2	protein_coding	RNA binding motif protein 39
known_NIR_10596	chr2	155996191	156000320	-	155996209	156000320	A3SS	ENSMUST00000109587.9	known	0.63	114	66	114	66	y	0.54	111	93	111	93	y	0.58	152	109	152	109	y	0.62	128	79	128	79	y	0.61	163	105	163	105	y	0.57	78	58	78	58	y	0.64	155	87	155	87	y	0.56	63	50	63	50	y	0.55	88	72	88	72	y	0.50	119	117	119	117	y	0.54	121	102	121	102	y	0.57	131	98	131	98	y	ENSMUSG00000027620.17	Rbm39	chr2	protein_coding	RNA binding motif protein 39
known_NIR_10597	chr2	156009508	156009605	-	156009511	156009605	A3SS	ENSMUST00000109587.9	known	0.07	12	157	12	157	y	0.06	8	131	8	131	y	0.02	5	214	5	214	y	0.05	10	176	10	176	y	0.09	17	181	17	181	y	0.04	4	93	4	93	y	0.06	13	190	13	190	y	0.03	3	104	3	104	y	0.09	14	140	14	140	y	0.07	14	183	14	183	y	0.10	15	132	15	132	y	0.07	14	194	14	194	y	ENSMUSG00000027620.17	Rbm39	chr2	protein_coding	RNA binding motif protein 39
known_NIR_10598	chr2	156012401	156014748	-	156009670	156014748	A3SS	ENSMUST00000109587.9	known	0.00	0	148	0	148	n	0.00	0	104	0	104	n	0.03	6	177	6	177	y	0.01	1	149	1	149	n	0.02	3	177	3	177	y	0.04	3	79	3	79	y	0.01	1	155	1	155	n	0.00	0	93	0	93	n	0.00	0	148	0	148	n	0.01	2	168	2	168	y	0.01	1	122	1	122	n	0.02	4	177	4	177	y	ENSMUSG00000027620.17	Rbm39	chr2	protein_coding	RNA binding motif protein 39
known_NIR_10599	chr2	156014942;156016088	156016017;156019256	-	156014942	156019256	cassetteExon	ENSMUST00000109587.9	known	0.05	6.0	110	7;5	110	y	0.09	8.0	84	12;4	84	y	0.07	12.0	153	18;6	153	y	0.06	11.0	166	13;9	166	y	0.07	12.0	170	17;7	170	y	0.03	2.5	91	5;0	91	n	0.06	8.5	146	13;4	146	y	0.06	6.0	95	10;2	95	y	0.06	6.5	111	11;2	111	y	0.08	13.5	156	15;12	156	y	0.03	4.0	124	6;2	124	y	0.07	11.5	159	19;4	159	y	ENSMUSG00000027620.17	Rbm39	chr2	protein_coding	RNA binding motif protein 39
known_NIR_10600	chr2	156014942;156018377	156018323;156019256	-	156014942	156019256	cassetteExon	ENSMUST00000109587.9	known	0.00	0.5	110	0;1	110	n	0.01	1.0	84	0;2	84	n	0.01	1.5	153	1;2	153	n	0.01	1.5	166	0;3	166	n	0.01	1.5	170	1;2	170	n	0.01	0.5	91	0;1	91	n	0.02	3.5	146	0;7	146	n	0.00	0.0	95	0;0	95	n	0.02	2.0	111	2;2	111	y	0.01	2.0	156	1;3	156	n	0.00	0.0	124	0;0	124	n	0.01	1.5	159	0;3	159	n	ENSMUSG00000027620.17	Rbm39	chr2	protein_coding	RNA binding motif protein 39
known_NIR_10601	chr2	156014942;156018377	156018323;156019256	-	156014942;156016088	156016017;156019256	MXE	ENSMUST00000153514.8	known	0.08	0.5	6.0	0;1	7;5	n	0.11	1.0	8.0	0;2	12;4	n	0.11	1.5	12.0	1;2	18;6	n	0.12	1.5	11.0	0;3	13;9	n	0.11	1.5	12.0	1;2	17;7	n	0.17	0.5	2.5	0;1	5;0	n	0.29	3.5	8.5	0;7	13;4	n	0.00	0.0	6.0	0;0	10;2	n	0.24	2.0	6.5	2;2	11;2	y	0.13	2.0	13.5	1;3	15;12	n	0.00	0.0	4.0	0;0	6;2	n	0.12	1.5	11.5	0;3	19;4	n	ENSMUSG00000027620.17	Rbm39	chr2	protein_coding	RNA binding motif protein 39
known_NIR_10602	chr2	156016894	156019256	-	156014942	156019256	A3SS	ENSMUST00000109587.9	known	0.04	4	110	4	110	y	0.02	2	84	2	84	y	0.04	6	153	6	153	y	0.02	3	166	3	166	y	0.00	0	170	0	170	n	0.00	0	91	0	91	n	0.00	0	146	0	146	n	0.02	2	95	2	95	y	0.03	3	111	3	111	y	0.00	0	156	0	156	n	0.01	1	124	1	124	n	0.01	2	159	2	159	y	ENSMUSG00000027620.17	Rbm39	chr2	protein_coding	RNA binding motif protein 39
known_NIR_10603	chr2	156016894	156019256	-	156016088	156019256	A3SS	ENSMUST00000153514.8	known	0.44	4	5	4	5	n	0.33	2	4	2	4	n	0.50	6	6	6	6	y	0.25	3	9	3	9	y	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.50	2	2	2	2	n	0.60	3	2	3	2	n	0.00	0	12	0	12	n	0.33	1	2	1	2	n	0.33	2	4	2	4	n	ENSMUSG00000027620.17	Rbm39	chr2	protein_coding	RNA binding motif protein 39
known_NIR_10604	chr2	156019305	156021097	-	156020872	156021097	3pMXE	ENSMUST00000137340.2	known	0.72	72	28	72	28	y	0.66	41	21	41	21	y	0.68	102	49	102	49	y	0.79	124	32	124	32	y	0.71	108	45	108	45	y	0.62	53	32	53	32	y	0.71	92	37	92	37	y	0.71	61	25	61	25	y	0.76	68	22	68	22	y	0.85	104	18	104	18	y	0.67	61	30	61	30	y	0.81	122	29	122	29	y	ENSMUSG00000027620.17	Rbm39	chr2	protein_coding	RNA binding motif protein 39
known_NIR_10605	chr2	156019305;156019826	156019553;156020800	-	156019305	156020800	cassetteExon	ENSMUST00000155837.8	known	0.10	1.5	13	0;3	13	n	0.65	7.5	4	6;9	4	y	0.26	9.0	26	1;17	26	n	0.23	4.5	15	3;6	15	y	0.22	7.5	27	0;15	27	n	0.29	4.0	10	0;8	10	n	0.20	6.5	26	0;13	26	n	0.30	3.5	8	2;5	8	y	0.20	3.0	12	3;3	12	y	0.37	6.5	11	0;13	11	n	0.38	8.0	13	0;16	13	n	0.39	7.0	11	3;11	11	y	ENSMUSG00000027620.17	Rbm39	chr2	protein_coding	RNA binding motif protein 39
known_NIR_10606	chr2	156019305;156019826	156019553;156021097	-	156019305	156021097	cassetteExon	ENSMUST00000109587.9	known	0.03	2.0	72	0;4	72	n	0.10	4.5	41	6;3	41	y	0.02	2.0	102	1;3	102	n	0.02	3.0	124	3;3	124	y	0.00	0.5	108	0;1	108	n	0.00	0.0	53	0;0	53	n	0.00	0.0	92	0;0	92	n	0.02	1.5	61	2;1	61	n	0.04	2.5	68	3;2	68	y	0.01	1.0	104	0;2	104	n	0.02	1.5	61	0;3	61	n	0.02	3.0	122	3;3	122	y	ENSMUSG00000027620.17	Rbm39	chr2	protein_coding	RNA binding motif protein 39
known_NIR_10607	chr2	156019305;156019826	156019553;156021097	-	156019305;156020872	156020800;156021097	MXE	ENSMUST00000155837.8	known	0.09	2.0	20.5	0;4	13;28	n	0.26	4.5	12.5	6;3	4;21	y	0.05	2.0	37.5	1;3	26;49	n	0.11	3.0	23.5	3;3	15;32	y	0.01	0.5	36.0	0;1	27;45	n	0.00	0.0	21.0	0;0	10;32	n	0.00	0.0	31.5	0;0	26;37	n	0.08	1.5	16.5	2;1	8;25	n	0.13	2.5	17.0	3;2	12;22	y	0.06	1.0	14.5	0;2	11;18	n	0.07	1.5	21.5	0;3	13;30	n	0.13	3.0	20.0	3;3	11;29	y	ENSMUSG00000027620.17	Rbm39	chr2	protein_coding	RNA binding motif protein 39
known_NIR_10608	chr2	156019305;156020872	156020800;156021097	-	156019305	156021097	cassetteExon	ENSMUST00000109587.9	known	0.22	20.5	72	13;28	72	y	0.23	12.5	41	4;21	41	y	0.27	37.5	102	26;49	102	y	0.16	23.5	124	15;32	124	y	0.25	36.0	108	27;45	108	y	0.28	21.0	53	10;32	53	y	0.26	31.5	92	26;37	92	y	0.21	16.5	61	8;25	61	y	0.20	17.0	68	12;22	68	y	0.12	14.5	104	11;18	104	y	0.26	21.5	61	13;30	61	y	0.14	20.0	122	11;29	122	y	ENSMUSG00000027620.17	Rbm39	chr2	protein_coding	RNA binding motif protein 39
known_NIR_10609	chr2	156019826	156021097	-	156020872	156021097	3pMXE	ENSMUST00000137340.2	known	0.12	4	28	4	28	y	0.12	3	21	3	21	y	0.06	3	49	3	49	y	0.09	3	32	3	32	y	0.02	1	45	1	45	n	0.00	0	32	0	32	n	0.00	0	37	0	37	n	0.04	1	25	1	25	n	0.08	2	22	2	22	y	0.10	2	18	2	18	y	0.09	3	30	3	30	y	0.09	3	29	3	29	y	ENSMUSG00000027620.17	Rbm39	chr2	protein_coding	RNA binding motif protein 39
known_NIR_10610	chr2	156019826;156020872	156020800;156021097	-	156019826	156021097	cassetteExon	ENSMUST00000154677.8	known	0.79	15.5	4	3;28	4	y	0.83	15.0	3	9;21	3	y	0.92	33.0	3	17;49	3	y	0.86	19.0	3	6;32	3	y	0.97	30.0	1	15;45	1	n	1.00	20.0	0	8;32	0	n	1.00	25.0	0	13;37	0	n	0.94	15.0	1	5;25	1	n	0.86	12.5	2	3;22	2	y	0.89	15.5	2	13;18	2	y	0.88	23.0	3	16;30	3	y	0.87	20.0	3	11;29	3	y	ENSMUSG00000027620.17	Rbm39	chr2	protein_coding	RNA binding motif protein 39
known_NIR_10611	chr2	156389803;156391910	156391772;156392569	+	156389803	156392569	cassetteExon	ENSMUST00000029158.4	known	0.03	1.0	29	2;0	29	n	0.05	1.5	31	3;0	31	n	0.15	5.0	29	8;2	29	y	0.03	1.0	33	2;0	33	n	0.04	2.0	45	4;0	45	n	0.14	2.5	16	5;0	16	n	0.08	4.0	49	8;0	49	n	0.05	1.5	28	3;0	28	n	0.01	0.5	34	1;0	34	n	0.03	1.0	37	2;0	37	n	0.05	1.5	27	3;0	27	n	0.09	2.5	26	5;0	26	n	ENSMUSG00000027628.11	Aar2	chr2	protein_coding	AAR2 splicing factor homolog
known_NIR_10612	chr2	156389803;156391947	156391772;156392569	+	156389803	156392569	cassetteExon	ENSMUST00000029158.4	known	0.09	3.0	29	2;4	29	y	0.10	3.5	31	3;4	31	y	0.16	5.5	29	8;3	29	y	0.07	2.5	33	2;3	33	y	0.06	3.0	45	4;2	45	y	0.14	2.5	16	5;0	16	n	0.12	7.0	49	8;6	49	y	0.12	4.0	28	3;5	28	y	0.07	2.5	34	1;4	34	n	0.10	4.0	37	2;6	37	y	0.08	2.5	27	3;2	27	y	0.13	4.0	26	5;3	26	y	ENSMUSG00000027628.11	Aar2	chr2	protein_coding	AAR2 splicing factor homolog
known_NIR_10613	chr2	156564022	156587755	+	156563007	156587755	A5SS	ENSMUST00000131157.9	known	0.43	9	12	9	12	y	0.61	17	11	17	11	y	0.35	18	33	18	33	y	0.25	4	12	4	12	y	0.35	8	15	8	15	y	0.37	10	17	10	17	y	0.62	13	8	13	8	y	0.54	15	13	15	13	y	0.46	13	15	13	15	y	0.68	13	6	13	6	y	0.71	20	8	20	8	y	0.54	14	12	14	12	y	ENSMUSG00000061689.16	Dlgap4	chr2	protein_coding	DLG associated protein 4
known_NIR_10614	chr2	156588116	156590252	+	156588116	156589943	A3SS	ENSMUST00000146412.9	known	1.00	30	0	30	0	n	0.94	34	2	34	2	y	0.96	52	2	52	2	y	0.95	18	1	18	1	n	1.00	34	0	34	0	n	0.96	24	1	24	1	n	1.00	36	0	36	0	n	1.00	14	0	14	0	n	1.00	27	0	27	0	n	0.95	39	2	39	2	y	1.00	20	0	20	0	n	1.00	32	0	32	0	n	ENSMUSG00000061689.16	Dlgap4	chr2	protein_coding	DLG associated protein 4
known_NIR_10615	chr2	156590323	156590864	+	156590340	156590864	A5SS	ENSMUST00000169464.9	known	0.03	1	29	1	29	n	0.00	0	36	0	36	n	0.07	4	52	4	52	y	0.00	0	21	0	21	n	0.05	2	38	2	38	y	0.00	0	26	0	26	n	0.00	0	53	0	53	n	0.00	0	25	0	25	n	0.13	4	26	4	26	y	0.00	0	44	0	44	n	0.00	0	31	0	31	n	0.08	4	44	4	44	y	ENSMUSG00000061689.16	Dlgap4	chr2	protein_coding	DLG associated protein 4
known_NIR_10616	chr2	156695938	156704519	-	156696224	156704519	A3SS	ENSMUST00000153616.9	known	1.00	1	0	1	0	n	1.00	4	0	4	0	n	0.38	3	5	3	5	n	1.00	5	0	5	0	n	0.70	7	3	7	3	y	1.00	1	0	1	0	n	1.00	2	0	2	0	n	0.00	0	2	0	2	n	1.00	2	0	2	0	n	1.00	4	0	4	0	n	1.00	2	0	2	0	n	0.00	0	1	0	1	n	ENSMUSG00000085741.9	5430405H02Rik	chr2	lncRNA	RIKEN cDNA 5430405H02 gene
known_NIR_10617	chr2	156705337	156714258	+	156705337	156707177	3pMXE	ENSMUST00000152942.2	known	0.01	2	352	2	352	y	0.00	1	411	1	411	n	0.00	2	602	2	602	y	0.01	3	582	3	582	y	0.00	0	789	0	789	n	0.01	2	365	2	365	y	0.00	3	669	3	669	y	0.01	3	334	3	334	y	0.01	2	381	2	381	y	0.00	2	714	2	714	y	0.01	3	514	3	514	y	0.01	4	634	4	634	y	ENSMUSG00000027637.4	Rab5if	chr2	protein_coding	RAB5 interacting factor
known_NIR_10618	chr2	156705337	156714258	+	156705337;156707280	156707177;156714258	ES	ENSMUST00000029165.4	known	0.00	2	454.0	2	352;556	y	0.00	1	439.0	1	411;467	n	0.00	2	649.5	2	602;697	y	0.00	3	636.0	3	582;690	y	0.00	0	794.0	0	789;799	n	0.01	2	384.0	2	365;403	y	0.00	3	773.5	3	669;878	y	0.01	3	362.0	3	334;390	y	0.00	2	439.0	2	381;497	y	0.00	2	758.0	2	714;802	y	0.01	3	541.5	3	514;569	y	0.01	4	667.5	4	634;701	y	ENSMUSG00000027637.4	Rab5if	chr2	protein_coding	RAB5 interacting factor
known_NIR_10619	chr2	156770801	156773136	-	156770801;156771890	156771852;156773136	ES	ENSMUST00000069600.13	known	0.89	24	3.0	24	3;3	y	0.94	22	1.5	22	2;1	n	0.96	22	1.0	22	1;1	n	0.94	31	2.0	31	2;2	y	0.89	47	6.0	47	6;6	y	0.88	21	3.0	21	2;4	y	0.95	35	2.0	35	1;3	n	0.87	24	3.5	24	3;4	y	0.89	24	3.0	24	4;2	y	0.94	37	2.5	37	2;3	y	0.93	32	2.5	32	2;3	y	0.92	23	2.0	23	2;2	y	ENSMUSG00000027634.15	Ndrg3	chr2	protein_coding	N-myc downstream regulated gene 3
known_NIR_10620	chr2	156812058	156833682	-	156812058	156833919	A5SS	ENSMUST00000069600.13	known	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	24	0	24	n	0.00	0	33	0	33	n	0.06	1	16	1	16	n	0.00	0	16	0	16	n	0.00	0	18	0	18	n	0.00	0	14	0	14	n	0.07	2	27	2	27	y	0.00	0	21	0	21	n	0.00	0	23	0	23	n	ENSMUSG00000027634.15	Ndrg3	chr2	protein_coding	N-myc downstream regulated gene 3
known_NIR_10621	chr2	156941423	156943641	-	156943363	156943641	A3SS	ENSMUST00000123932.8	known	0.15	6	35	6	35	y	0.44	12	15	12	15	y	0.45	20	24	20	24	y	0.16	5	26	5	26	y	0.29	10	25	10	25	y	0.37	7	12	7	12	y	0.21	11	42	11	42	y	0.41	12	17	12	17	y	0.13	4	26	4	26	y	0.18	7	32	7	32	y	0.42	28	38	28	38	y	0.31	9	20	9	20	y	ENSMUSG00000027639.17	Samhd1	chr2	protein_coding	SAM domain and HD domain, 1
known_NIR_10622	chr2	156941423;156943363	156943241;156943641	-	156941423	156943641	cassetteExon	ENSMUST00000057725.10	known	0.84	32.5	6	30;35	6	y	0.56	15.5	12	16;15	12	y	0.46	17.0	20	10;24	20	y	0.81	21.0	5	16;26	5	y	0.66	19.0	10	13;25	10	y	0.60	10.5	7	9;12	7	y	0.74	31.5	11	21;42	11	y	0.59	17.0	12	17;17	12	y	0.85	23.0	4	20;26	4	y	0.77	23.5	7	15;32	7	y	0.50	28.5	28	19;38	28	y	0.62	15.0	9	10;20	9	y	ENSMUSG00000027639.17	Samhd1	chr2	protein_coding	SAM domain and HD domain, 1
known_NIR_10623	chr2	156962311	156962402	-	156958427	156962402	A3SS	ENSMUST00000057725.10	known	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.19	5	21	5	21	y	0.00	0	18	0	18	n	0.00	0	25	0	25	n	0.12	1	7	1	7	n	0.00	0	22	0	22	n	0.00	0	20	0	20	n	0.06	2	29	2	29	y	0.00	0	25	0	25	n	0.08	2	22	2	22	y	0.00	0	23	0	23	n	ENSMUSG00000027639.17	Samhd1	chr2	protein_coding	SAM domain and HD domain, 1
known_NIR_10624	chr2	157121443	157125504	+	157121255	157125504	A5SS	ENSMUST00000116380.9	known	0.00	0	135	0	135	n	0.00	0	97	0	97	n	0.01	2	276	2	276	y	0.00	0	209	0	209	n	0.00	0	288	0	288	n	0.00	0	209	0	209	n	0.00	0	201	0	201	n	0.01	2	179	2	179	y	0.00	0	131	0	131	n	0.01	1	196	1	196	n	0.01	1	143	1	143	n	0.00	0	192	0	192	n	ENSMUSG00000027642.16	Rpn2	chr2	protein_coding	ribophorin II
known_NIR_10625	chr2	157121693	157125504	+	157121255	157125504	A5SS	ENSMUST00000116380.9	known	0.01	2	135	2	135	y	0.01	1	97	1	97	n	0.01	2	276	2	276	y	0.01	2	209	2	209	y	0.01	2	288	2	288	y	0.00	1	209	1	209	n	0.01	3	201	3	201	y	0.01	1	179	1	179	n	0.02	2	131	2	131	y	0.02	3	196	3	196	y	0.00	0	143	0	143	n	0.02	3	192	3	192	y	ENSMUSG00000027642.16	Rpn2	chr2	protein_coding	ribophorin II
known_NIR_10626	chr2	157124081	157125504	+	157121255	157125504	A5SS	ENSMUST00000116380.9	known	0.00	0	135	0	135	n	0.00	0	97	0	97	n	0.00	0	276	0	276	n	0.01	2	209	2	209	y	0.01	4	288	4	288	y	0.00	0	209	0	209	n	0.02	4	201	4	201	y	0.00	0	179	0	179	n	0.01	1	131	1	131	n	0.00	0	196	0	196	n	0.00	0	143	0	143	n	0.03	6	192	6	192	y	ENSMUSG00000027642.16	Rpn2	chr2	protein_coding	ribophorin II
known_NIR_10627	chr2	157125697	157132457	+	157125697	157131448	3pMXE	ENSMUST00000142463.8	known	0.01	4	346	4	346	y	0.00	0	281	0	281	n	0.00	1	683	1	683	n	0.00	0	433	0	433	n	0.00	3	701	3	701	y	0.00	2	455	2	455	y	0.00	2	565	2	565	y	0.00	2	542	2	542	y	0.01	2	295	2	295	y	0.00	0	492	0	492	n	0.00	1	345	1	345	n	0.00	1	422	1	422	n	ENSMUSG00000027642.16	Rpn2	chr2	protein_coding	ribophorin II
known_NIR_10628	chr2	157125697	157132457	+	157125697;157131543	157131448;157132457	ES	ENSMUST00000116380.9	known	0.01	4	305.0	4	346;264	y	0.00	0	249.5	0	281;218	n	0.00	1	580.5	1	683;478	n	0.00	0	385.5	0	433;338	n	0.00	3	614.0	3	701;527	y	0.00	2	403.5	2	455;352	y	0.00	2	507.0	2	565;449	y	0.00	2	436.5	2	542;331	y	0.01	2	262.0	2	295;229	y	0.00	0	435.5	0	492;379	n	0.00	1	321.5	1	345;298	n	0.00	1	378.5	1	422;335	n	ENSMUSG00000027642.16	Rpn2	chr2	protein_coding	ribophorin II
known_NIR_10629	chr2	157163792;157165190	157165143;157167631	+	157163792	157167631	cassetteExon	ENSMUST00000116380.9	known	0.01	4.5	870	5;4	870	y	0.00	3.5	1035	4;3	1035	y	0.01	8.0	1181	9;7	1181	y	0.00	1.5	633	2;1	633	n	0.00	4.0	1229	4;4	1229	y	0.01	5.0	720	6;4	720	y	0.01	9.0	1256	12;6	1256	y	0.00	2.5	748	3;2	748	y	0.00	3.0	703	4;2	703	y	0.01	6.5	1007	8;5	1007	y	0.01	8.5	867	8;9	867	y	0.01	6.0	759	8;4	759	y	ENSMUSG00000027642.16	Rpn2	chr2	protein_coding	ribophorin II
known_NIR_10630	chr2	157400247	157408140	-	157400247	157408168	A5SS	ENSMUST00000109528.9	known	0.04	2	44	2	44	y	0.00	0	27	0	27	n	0.02	1	57	1	57	n	0.02	1	44	1	44	n	0.03	2	71	2	71	y	0.11	5	41	5	41	y	0.00	0	63	0	63	n	0.00	0	41	0	41	n	0.00	0	36	0	36	n	0.00	0	54	0	54	n	0.08	3	34	3	34	y	0.05	2	38	2	38	y	ENSMUSG00000067787.11	Blcap	chr2	protein_coding	bladder cancer associated protein
known_NIR_10631	chr2	157851278	157853025	-	157851278	157870294	A5SS	ENSMUST00000029179.11	known	0.25	2	6	2	6	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.14	2	12	2	12	y	0.09	1	10	1	10	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.20	1	4	1	4	n	ENSMUSG00000027650.13	Tti1	chr2	protein_coding	TELO2 interacting protein 1
known_NIR_10632	chr2	157870965	157885326	+	157870965;157878045	157877916;157885326	ES	ENSMUST00000103123.10	known	0.00	0	21.5	0	22;21	n	0.15	3	16.5	3	16;17	y	0.06	2	30.0	2	30;30	y	0.10	4	35.0	4	36;34	y	0.10	4	37.5	4	35;40	y	0.05	1	21.0	1	21;21	n	0.00	0	34.0	0	27;41	n	0.00	0	18.5	0	20;17	n	0.00	0	17.0	0	16;18	n	0.09	3	31.0	3	28;34	y	0.11	3	24.0	3	28;20	y	0.11	4	31.0	4	34;28	y	ENSMUSG00000027651.17	Rprd1b	chr2	protein_coding	regulation of nuclear pre-mRNA domain containing 1B
known_NIR_10633	chr2	157885459	157889836	+	157885459	157889839	A3SS	ENSMUST00000103123.10	known	0.52	22	20	22	20	y	0.52	13	12	13	12	y	0.57	32	24	32	24	y	0.65	30	16	30	16	y	0.57	39	29	39	29	y	0.61	17	11	17	11	y	0.55	27	22	27	22	y	0.61	22	14	22	14	y	0.56	22	17	22	17	y	0.31	13	29	13	29	y	0.51	20	19	20	19	y	0.55	30	25	30	25	y	ENSMUSG00000027651.17	Rprd1b	chr2	protein_coding	regulation of nuclear pre-mRNA domain containing 1B
known_NIR_10634	chr2	157900747;157912576	157912481;157916850	+	157900747	157916850	cassetteExon	ENSMUST00000103123.10	known	0.00	0.0	26	0;0	26	n	0.06	1.0	15	0;2	15	n	0.08	2.5	29	3;2	29	y	0.01	0.5	36	0;1	36	n	0.12	5.5	39	6;5	39	y	0.04	1.0	26	2;0	26	n	0.03	1.0	38	0;2	38	n	0.05	1.0	20	1;1	20	n	0.05	1.5	28	1;2	28	n	0.11	4.0	33	5;3	33	y	0.02	0.5	31	1;0	31	n	0.02	0.5	32	1;0	32	n	ENSMUSG00000027651.17	Rprd1b	chr2	protein_coding	regulation of nuclear pre-mRNA domain containing 1B
known_NIR_10635	chr2	158164034	158166531	+	158164034	158166429	A3SS	ENSMUST00000016168.9	known	0.02	19	881	19	881	y	0.01	13	1272	13	1272	y	0.01	19	1803	19	1803	y	0.01	9	743	9	743	y	0.01	19	1601	19	1601	y	0.01	14	1123	14	1123	y	0.01	19	1395	19	1395	y	0.01	15	1335	15	1335	y	0.01	3	530	3	530	y	0.00	3	795	3	795	y	0.00	0	457	0	457	n	0.01	4	699	4	699	y	ENSMUSG00000016024.10	Lbp	chr2	protein_coding	lipopolysaccharide binding protein
known_NIR_10636	chr2	158199183	158201102	-	158199183	158200125	5pMXE	ENSMUST00000154242.2	known	0.29	4	10	4	10	y	0.53	9	8	9	8	y	0.55	18	15	18	15	y	0.75	6	2	6	2	n	0.48	12	13	12	13	y	0.42	8	11	8	11	y	0.67	10	5	10	5	y	0.76	16	5	16	5	y	0.57	8	6	8	6	y	0.86	18	3	18	3	y	0.46	6	7	6	7	y	0.53	8	7	8	7	y	ENSMUSG00000085385.8	Snhg17	chr2	lncRNA	small nucleolar RNA host gene 17
known_NIR_10637	chr2	158199183;158200260	158200125;158201102	-	158199183	158201102	cassetteExon	ENSMUST00000141809.8	known	0.56	5.0	4	10;0	4	n	0.38	5.5	9	8;3	9	y	0.32	8.5	18	15;2	18	y	0.20	1.5	6	2;1	6	n	0.35	6.5	12	13;0	12	n	0.41	5.5	8	11;0	8	n	0.20	2.5	10	5;0	10	n	0.14	2.5	16	5;0	16	n	0.27	3.0	8	6;0	8	n	0.08	1.5	18	3;0	18	n	0.37	3.5	6	7;0	6	n	0.33	4.0	8	7;1	8	n	ENSMUSG00000085385.8	Snhg17	chr2	lncRNA	small nucleolar RNA host gene 17
known_NIR_10638	chr2	158201352	158202384	-	158201251	158202384	A3SS	ENSMUST00000133449.8	known	1.00	6	0	6	0	n	0.33	3	6	3	6	n	0.75	12	4	12	4	y	0.33	3	6	3	6	n	0.73	11	4	11	4	y	0.40	4	6	4	6	y	0.36	5	9	5	9	y	0.67	6	3	6	3	n	0.58	7	5	7	5	y	0.56	5	4	5	4	n	0.60	6	4	6	4	y	0.64	9	5	9	5	y	ENSMUSG00000085385.8	Snhg17	chr2	lncRNA	small nucleolar RNA host gene 17
known_NIR_10639	chr2	158201352	158202384	-	158201352	158202379	A5SS	ENSMUST00000141809.8	known	0.86	6	1	6	1	n	1.00	3	0	3	0	n	0.80	12	3	12	3	y	0.75	3	1	3	1	n	0.92	11	1	11	1	n	0.67	4	2	4	2	n	0.83	5	1	5	1	n	1.00	6	0	6	0	n	0.78	7	2	7	2	n	1.00	5	0	5	0	n	1.00	6	0	6	0	n	1.00	9	0	9	0	n	ENSMUSG00000085385.8	Snhg17	chr2	lncRNA	small nucleolar RNA host gene 17
known_NIR_10640	chr2	158201352	158202384	-	158201352	158202447	A5SS	ENSMUST00000152125.8	known	1.00	6	0	6	0	n	1.00	3	0	3	0	n	0.86	12	2	12	2	y	1.00	3	0	3	0	n	0.92	11	1	11	1	n	0.80	4	1	4	1	n	0.71	5	2	5	2	n	1.00	6	0	6	0	n	1.00	7	0	7	0	n	1.00	5	0	5	0	n	1.00	6	0	6	0	n	0.90	9	1	9	1	n	ENSMUSG00000085385.8	Snhg17	chr2	lncRNA	small nucleolar RNA host gene 17
known_NIR_10641	chr2	158202990	158203325	-	158203116	158203325	A3SS	ENSMUST00000141809.8	known	0.94	15	1	15	1	n	0.81	13	3	13	3	y	0.85	22	4	22	4	y	0.95	20	1	20	1	n	0.89	16	2	16	2	y	0.95	20	1	20	1	n	0.73	16	6	16	6	y	0.83	19	4	19	4	y	0.92	11	1	11	1	n	1.00	18	0	18	0	n	0.95	20	1	20	1	n	0.88	21	3	21	3	y	ENSMUSG00000085385.8	Snhg17	chr2	lncRNA	small nucleolar RNA host gene 17
known_NIR_10642	chr2	158218246;158218744	158218665;158218914	+	158218246	158218914	cassetteExon	ENSMUST00000239262.2	known	0.17	2.0	10	2;2	10	y	0.25	1.0	3	1;1	3	n	0.20	1.0	4	1;1	4	n	0.07	1.0	13	0;2	13	n	0.31	4.5	10	5;4	10	y	0.27	1.5	4	3;0	4	n	0.40	4.0	6	2;6	6	y	0.14	1.0	6	0;2	6	n	0.24	5.5	17	6;5	17	y	0.27	4.5	12	6;3	12	y	0.18	1.5	7	2;1	7	n	0.20	1.5	6	2;1	6	n	ENSMUSG00000044349.17	Snhg11	chr2	protein_coding	small nucleolar RNA host gene 11
known_NIR_10643	chr2	158290369	158292109	+	158290369	158292097	A3SS	ENSMUST00000109486.9	known	1.00	3	0	3	0	n	0.11	1	8	1	8	n	0.54	7	6	7	6	y	0.40	4	6	4	6	y	0.13	3	20	3	20	y	0.36	4	7	4	7	y	0.42	5	7	5	7	y	0.57	4	3	4	3	n	0.00	0	2	0	2	n	0.14	2	12	2	12	y	1.00	4	0	4	0	n	0.42	5	7	5	7	y	ENSMUSG00000027652.16	Ralgapb	chr2	protein_coding	Ral GTPase activating protein, beta subunit (non-catalytic)
known_NIR_10644	chr2	158477346	158477947	+	158477346	158477928	A3SS	ENSMUST00000183731.8	known	0.16	4	21	4	21	y	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.07	1	13	1	13	n	0.00	0	9	0	9	n	0.21	4	15	4	15	y	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.27	3	8	3	8	y	0.53	9	8	9	8	y	0.15	3	17	3	17	y	ENSMUSG00000037761.17	Actr5	chr2	protein_coding	ARP5 actin-related protein 5
known_NIR_10645	chr2	160544422	160544622	+	160540159	160544622	A5SS	ENSMUST00000109468.3	known	0.02	1	60	1	60	n	0.00	0	50	0	50	n	0.02	2	87	2	87	y	0.00	0	71	0	71	n	0.00	0	102	0	102	n	0.00	0	36	0	36	n	0.02	1	52	1	52	n	0.00	0	49	0	49	n	0.00	0	51	0	51	n	0.01	1	81	1	81	n	0.00	0	51	0	51	n	0.00	0	75	0	75	n	ENSMUSG00000070544.7	Top1	chr2	protein_coding	topoisomerase (DNA) I
known_NIR_10646	chr2	160583060	160589695	+	160573953	160589695	A5SS	ENSMUST00000151590.8	known	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.00	0	21	0	21	n	0.00	0	16	0	16	n	0.00	0	41	0	41	n	0.00	0	14	0	14	n	0.00	0	28	0	28	n	0.00	0	21	0	21	n	0.00	0	24	0	24	n	0.00	0	23	0	23	n	0.00	0	22	0	22	n	0.06	2	29	2	29	y	ENSMUSG00000016933.18	Plcg1	chr2	protein_coding	phospholipase C, gamma 1
known_NIR_10647	chr2	160595484	160595563	+	160595489	160595563	A5SS	ENSMUST00000151590.8	known	1.00	35	0	35	0	n	1.00	17	0	17	0	n	0.98	40	1	40	1	n	1.00	57	0	57	0	n	1.00	67	0	67	0	n	1.00	26	0	26	0	n	1.00	48	0	48	0	n	1.00	30	0	30	0	n	0.97	32	1	32	1	n	1.00	67	0	67	0	n	1.00	34	0	34	0	n	0.96	48	2	48	2	y	ENSMUSG00000016933.18	Plcg1	chr2	protein_coding	phospholipase C, gamma 1
known_NIR_10648	chr2	160600049	160601343	+	160600049	160601374	A3SS	ENSMUST00000151590.8	known	0.00	0	49	0	49	n	0.05	2	38	2	38	y	0.02	1	40	1	40	n	0.02	1	63	1	63	n	0.01	1	84	1	84	n	0.00	0	28	0	28	n	0.04	2	54	2	54	y	0.03	1	32	1	32	n	0.02	1	43	1	43	n	0.01	1	94	1	94	n	0.00	0	44	0	44	n	0.01	1	66	1	66	n	ENSMUSG00000016933.18	Plcg1	chr2	protein_coding	phospholipase C, gamma 1
known_NIR_10649	chr2	160730137	160733916	+	160722716	160733916	A5SS	ENSMUST00000109456.9	known	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.58	7	5	7	5	y	-	-	-	-	-	-	0.75	3	1	3	1	n	0.57	4	3	4	3	n	0.80	4	1	4	1	n	1.00	2	0	2	0	n	0.71	5	2	5	2	n	0.75	6	2	6	2	n	1.00	3	0	3	0	n	1.00	3	0	3	0	n	ENSMUSG00000027412.13	Lpin3	chr2	protein_coding	lipin 3
known_NIR_10650	chr2	162774062;162774899	162774735;162775346	+	162774062	162775346	cassetteExon	ENSMUST00000130411.7	known	0.03	2.0	78	3;1	78	n	0.01	0.5	56	1;0	56	n	0.05	6.5	119	13;0	119	n	0.03	3.5	100	7;0	100	n	0.06	9.5	142	11;8	142	y	0.03	2.5	70	3;2	70	y	0.03	3.5	103	7;0	103	n	0.09	5.5	58	5;6	58	y	0.05	3.0	59	6;0	59	n	0.06	6.0	100	7;5	100	y	0.03	3.5	100	7;0	100	n	0.03	3.0	95	3;3	95	y	ENSMUSG00000016921.15	Srsf6	chr2	protein_coding	serine and arginine-rich splicing factor 6
known_NIR_10651	chr2	162774062;162775002	162774735;162775346	+	162774062	162775346	cassetteExon	ENSMUST00000130411.7	known	0.20	20.0	78	3;37	78	y	0.18	12.5	56	1;24	56	n	0.22	33.5	119	13;54	119	y	0.13	15.5	100	7;24	100	y	0.21	37.5	142	11;64	142	y	0.14	11.0	70	3;19	70	y	0.16	19.5	103	7;32	103	y	0.21	15.0	58	5;25	58	y	0.19	13.5	59	6;21	59	y	0.15	17.0	100	7;27	100	y	0.12	14.0	100	7;21	100	y	0.18	21.0	95	3;39	95	y	ENSMUSG00000016921.15	Srsf6	chr2	protein_coding	serine and arginine-rich splicing factor 6
known_NIR_10652	chr2	162774899	162775346	+	162775002	162775346	A5SS	ENSMUST00000017065.15	known	0.03	1	37	1	37	n	0.00	0	24	0	24	n	0.00	0	54	0	54	n	0.00	0	24	0	24	n	0.11	8	64	8	64	y	0.10	2	19	2	19	y	0.00	0	32	0	32	n	0.19	6	25	6	25	y	0.00	0	21	0	21	n	0.16	5	27	5	27	y	0.00	0	21	0	21	n	0.07	3	39	3	39	y	ENSMUSG00000016921.15	Srsf6	chr2	protein_coding	serine and arginine-rich splicing factor 6
known_NIR_10653	chr2	162830116	162833335	+	162829515	162833335	A5SS	ENSMUST00000018012.14	known	0.02	1	48	1	48	n	0.00	0	46	0	46	n	0.00	0	10	0	10	n	0.00	0	38	0	38	n	0.04	5	113	5	113	y	0.00	0	23	0	23	n	0.01	1	102	1	102	n	0.05	2	39	2	39	y	0.00	0	79	0	79	n	0.00	0	91	0	91	n	0.00	0	92	0	92	n	0.01	1	99	1	99	n	ENSMUSG00000017868.17	Sgk2	chr2	protein_coding	serum/glucocorticoid regulated kinase 2
known_NIR_10654	chr2	162840186	162845192	+	162840186;162841188	162841102;162845192	ES	ENSMUST00000018012.14	known	0.12	6	46.0	6	39;53	y	0.11	7	57.5	7	53;62	y	0.00	0	19.0	0	21;17	n	0.12	6	45.0	6	40;50	y	0.16	16	82.5	16	80;85	y	0.06	2	29.0	2	24;34	y	0.06	6	101.5	6	90;113	y	0.17	9	43.0	9	43;43	y	0.09	8	78.5	8	63;94	y	0.11	13	109.0	13	110;108	y	0.14	15	95.0	15	88;102	y	0.10	12	110.0	12	99;121	y	ENSMUSG00000017868.17	Sgk2	chr2	protein_coding	serum/glucocorticoid regulated kinase 2
known_NIR_10655	chr2	162859576	162864295	+	162859453	162864295	A5SS	ENSMUST00000018002.13	known	0.58	15	11	15	11	y	0.25	7	21	7	21	y	0.32	13	28	13	28	y	0.24	12	39	12	39	y	0.25	15	44	15	44	y	0.25	6	18	6	18	y	0.33	17	34	17	34	y	0.25	5	15	5	15	y	0.36	12	21	12	21	y	0.32	20	43	20	43	y	0.49	19	20	19	20	y	0.32	15	32	15	32	y	ENSMUSG00000017858.13	Ift52	chr2	protein_coding	intraflagellar transport 52
known_NIR_10656	chr2	163257575	163260961	-	163257575	163261332	A5SS	ENSMUST00000046908.10	known	0.00	0	49	0	49	n	0.05	2	41	2	41	y	0.11	6	47	6	47	y	0.00	0	30	0	30	n	0.07	3	42	3	42	y	0.09	3	29	3	29	y	0.13	7	46	7	46	y	0.09	4	42	4	42	y	0.00	0	34	0	34	n	0.04	2	47	2	47	y	0.15	6	35	6	35	y	0.07	3	43	3	43	y	ENSMUSG00000035399.13	Oser1	chr2	protein_coding	oxidative stress responsive serine rich 1
known_NIR_10657	chr2	163336228	163338487	-	163336078	163338487	A3SS	ENSMUST00000141329.8	known	0.11	4	33	4	33	y	0.29	2	5	2	5	n	0.00	0	4	0	4	n	0.03	1	28	1	28	n	0.20	7	28	7	28	y	0.67	2	1	2	1	n	0.17	10	48	10	48	y	0.14	1	6	1	6	n	0.06	1	16	1	16	n	0.08	3	33	3	33	y	0.19	5	22	5	22	y	0.14	3	19	3	19	y	ENSMUSG00000046840.17	Hnf4aos	chr2	lncRNA	hepatic nuclear factor 4 alpha, opposite strand
known_NIR_10658	chr2	163338551	163383423	-	163338551;163338858	163338655;163383423	ES	ENSMUST00000141329.8	known	0.12	4	30.0	4	21;39	y	0.05	1	18.0	1	16;20	n	0.00	0	5.0	0	5;5	n	0.06	2	32.5	2	31;34	y	0.04	2	44.0	2	44;44	y	0.00	0	4.5	0	5;4	n	0.19	9	39.5	9	47;32	y	0.00	0	7.5	0	10;5	n	0.05	1	20.0	1	17;23	n	0.00	0	37.5	0	38;37	n	0.03	1	28.0	1	29;27	n	0.11	2	17.0	2	17;17	y	ENSMUSG00000046840.17	Hnf4aos	chr2	lncRNA	hepatic nuclear factor 4 alpha, opposite strand
known_NIR_10659	chr2	163389339	163393497	+	163388862	163393497	A5SS	ENSMUST00000131658.2	known	1.00	358	0	358	0	n	0.99	286	2	286	2	y	1.00	764	1	764	1	n	1.00	470	1	470	1	n	1.00	807	0	807	0	n	1.00	425	2	425	2	y	1.00	609	0	609	0	n	1.00	442	0	442	0	n	1.00	432	2	432	2	y	1.00	653	2	653	2	y	0.99	400	5	400	5	y	0.99	506	6	506	6	y	ENSMUSG00000017950.17	Hnf4a	chr2	protein_coding	hepatic nuclear factor 4, alpha
known_NIR_10660	chr2	163444334	163448948	+	163444334	163449129	A3SS	ENSMUST00000171696.8	known	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.20	2	8	2	8	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.38	3	5	3	5	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	ENSMUSG00000017679.17	Ttpal	chr2	protein_coding	tocopherol (alpha) transfer protein-like
known_NIR_10661	chr2	163444334	163448948	+	163444334	163449132	A3SS	ENSMUST00000109408.10	known	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	43	0	43	n	0.00	0	17	0	17	n	0.06	2	31	2	31	y	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.21	3	11	3	11	y	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.08	1	11	1	11	n	0.00	0	17	0	17	n	ENSMUSG00000017679.17	Ttpal	chr2	protein_coding	tocopherol (alpha) transfer protein-like
known_NIR_10662	chr2	163444334	163449132	+	163444334	163449129	A3SS	ENSMUST00000171696.8	known	0.85	11	2	11	2	y	0.67	10	5	10	5	y	0.86	43	7	43	7	y	0.74	17	6	17	6	y	0.79	31	8	31	8	y	0.77	10	3	10	3	y	0.57	8	6	8	6	y	0.69	11	5	11	5	y	0.75	3	1	3	1	n	0.68	13	6	13	6	y	0.73	11	4	11	4	y	0.85	17	3	17	3	y	ENSMUSG00000017679.17	Ttpal	chr2	protein_coding	tocopherol (alpha) transfer protein-like
known_NIR_10663	chr2	163449594	163455655	+	163449594	163453679	3pMXE	ENSMUST00000144729.2	known	0.10	2	19	2	19	y	0.00	0	18	0	18	n	0.00	0	64	0	64	n	0.05	1	21	1	21	n	0.00	0	46	0	46	n	0.00	0	29	0	29	n	0.00	0	35	0	35	n	0.00	0	24	0	24	n	0.00	0	10	0	10	n	0.00	0	27	0	27	n	0.00	0	18	0	18	n	0.00	0	21	0	21	n	ENSMUSG00000017679.17	Ttpal	chr2	protein_coding	tocopherol (alpha) transfer protein-like
known_NIR_10664	chr2	163449594	163455655	+	163449594;163453872	163453679;163455655	ES	ENSMUST00000171696.8	known	0.08	2	24.0	2	19;29	y	0.00	0	20.0	0	18;22	n	0.00	0	63.5	0	64;63	n	0.05	1	18.5	1	21;16	n	0.00	0	46.0	0	46;46	n	0.00	0	32.5	0	29;36	n	0.00	0	34.0	0	35;33	n	0.00	0	24.0	0	24;24	n	0.00	0	11.0	0	10;12	n	0.00	0	21.5	0	27;16	n	0.00	0	20.5	0	18;23	n	0.00	0	26.5	0	21;32	n	ENSMUSG00000017679.17	Ttpal	chr2	protein_coding	tocopherol (alpha) transfer protein-like
known_NIR_10665	chr2	163449594	163455655	+	163453872	163455655	5pMXE	ENSMUST00000132904.2	known	0.06	2	29	2	29	y	0.00	0	22	0	22	n	0.00	0	63	0	63	n	0.06	1	16	1	16	n	0.00	0	46	0	46	n	0.00	0	36	0	36	n	0.00	0	33	0	33	n	0.00	0	24	0	24	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.00	0	23	0	23	n	0.00	0	32	0	32	n	ENSMUSG00000017679.17	Ttpal	chr2	protein_coding	tocopherol (alpha) transfer protein-like
known_NIR_10666	chr2	163481247;163485218	163485062;163486918	-	163481247	163486918	cassetteExon	ENSMUST00000017851.4	known	0.03	11.0	319	11;11	319	y	0.02	5.5	217	7;4	217	y	0.03	22.5	863	27;18	863	y	0.02	9.0	432	10;8	432	y	0.03	22.5	633	28;17	633	y	0.02	13.0	563	17;9	563	y	0.03	14.5	530	17;12	530	y	0.02	14.0	613	14;14	613	y	0.03	6.5	221	8;5	221	y	0.03	10.5	352	9;12	352	y	0.03	6.5	192	7;6	192	y	0.03	10.5	304	10;11	304	y	ENSMUSG00000017707.10	Serinc3	chr2	protein_coding	serine incorporator 3
known_NIR_10667	chr2	163500412	163501070	+	163500412	163563048	A3SS	ENSMUST00000164399.8	known	0.33	2	4	2	4	n	0.45	5	6	5	6	y	0.17	1	5	1	5	n	1.00	5	0	5	0	n	0.44	7	9	7	9	y	0.43	3	4	3	4	n	0.85	11	2	11	2	y	0.75	3	1	3	1	n	0.83	5	1	5	1	n	0.33	4	8	4	8	y	0.50	6	6	6	6	y	0.78	7	2	7	2	n	ENSMUSG00000035268.15	Pkig	chr2	protein_coding	protein kinase inhibitor, gamma
known_NIR_10668	chr2	163500412	163545406	+	163501155	163545406	A5SS&ES	ENSMUST00000152418.8	known	0.84	37	7	37	7	y	0.84	37	7	37	7	y	0.78	32	9	32	9	y	0.77	34	10	34	10	y	0.81	47	11	47	11	y	0.85	33	6	33	6	y	0.75	40	13	40	13	y	0.82	18	4	18	4	y	0.59	16	11	16	11	y	0.76	38	12	38	12	y	0.72	23	9	23	9	y	0.86	32	5	32	5	y	ENSMUSG00000035268.15	Pkig	chr2	protein_coding	protein kinase inhibitor, gamma
known_NIR_10669	chr2	163500412	163563048	+	163500412;163545475	163545406;163563048	ES	ENSMUST00000147385.8	known	0.08	4	45.5	4	37;54	y	0.10	6	55.5	6	37;74	y	0.08	5	61.0	5	32;90	y	0.00	0	50.5	0	34;67	n	0.11	9	70.0	9	47;93	y	0.09	4	42.5	4	33;52	y	0.03	2	75.0	2	40;110	y	0.03	1	33.0	1	18;48	n	0.04	1	26.5	1	16;37	n	0.12	8	56.0	8	38;74	y	0.15	6	34.5	6	23;46	y	0.05	2	39.0	2	32;46	y	ENSMUSG00000035268.15	Pkig	chr2	protein_coding	protein kinase inhibitor, gamma
known_NIR_10670	chr2	163500412	163563048	+	163545475	163563048	A5SS&ES	ENSMUST00000152418.8	known	0.07	4	54	4	54	y	0.07	6	74	6	74	y	0.05	5	90	5	90	y	0.00	0	67	0	67	n	0.09	9	93	9	93	y	0.07	4	52	4	52	y	0.02	2	110	2	110	y	0.02	1	48	1	48	n	0.03	1	37	1	37	n	0.10	8	74	8	74	y	0.12	6	46	6	46	y	0.04	2	46	2	46	y	ENSMUSG00000035268.15	Pkig	chr2	protein_coding	protein kinase inhibitor, gamma
known_NIR_10671	chr2	163500412;163501155	163501070;163545406	+	163500412	163545406	cassetteExon	ENSMUST00000147385.8	known	0.11	4.5	37	2;7	37	y	0.14	6.0	37	5;7	37	y	0.14	5.0	32	1;9	32	n	0.18	7.5	34	5;10	34	y	0.16	9.0	47	7;11	47	y	0.12	4.5	33	3;6	33	y	0.23	12.0	40	11;13	40	y	0.16	3.5	18	3;4	18	y	0.33	8.0	16	5;11	16	y	0.17	8.0	38	4;12	38	y	0.25	7.5	23	6;9	23	y	0.16	6.0	32	7;5	32	y	ENSMUSG00000035268.15	Pkig	chr2	protein_coding	protein kinase inhibitor, gamma
known_NIR_10672	chr2	163500579	163501070	+	163500412	163501070	A5SS	ENSMUST00000099105.9	known	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.25	1	3	1	3	n	0.21	3	11	3	11	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	ENSMUSG00000035268.15	Pkig	chr2	protein_coding	protein kinase inhibitor, gamma
known_NIR_10673	chr2	163500579	163545406	+	163500412	163545406	A5SS	ENSMUST00000147385.8	known	0.03	1	37	1	37	n	0.10	4	37	4	37	y	0.09	3	32	3	32	y	0.08	3	34	3	34	y	0.08	4	47	4	47	y	0.03	1	33	1	33	n	0.05	2	40	2	40	y	0.18	4	18	4	18	y	0.00	0	16	0	16	n	0.07	3	38	3	38	y	0.12	3	23	3	23	y	0.00	0	32	0	32	n	ENSMUSG00000035268.15	Pkig	chr2	protein_coding	protein kinase inhibitor, gamma
known_NIR_10674	chr2	163500579	163545406	+	163500579;163501155	163501070;163545406	ES	ENSMUST00000152418.8	known	0.22	1	3.5	1	0;7	n	0.53	4	3.5	4	0;7	n	0.40	3	4.5	3	0;9	n	0.38	3	5.0	3	0;10	n	0.42	4	5.5	4	0;11	n	0.22	1	3.5	1	1;6	n	0.20	2	8.0	2	3;13	y	0.67	4	2.0	4	0;4	n	0.00	0	5.5	0	0;11	n	0.32	3	6.5	3	1;12	n	0.40	3	4.5	3	0;9	n	0.00	0	2.5	0	0;5	n	ENSMUSG00000035268.15	Pkig	chr2	protein_coding	protein kinase inhibitor, gamma
known_NIR_10675	chr2	163500579	163545406	+	163501155	163545406	A5SS&ES	ENSMUST00000099105.9	known	0.12	1	7	1	7	n	0.36	4	7	4	7	y	0.25	3	9	3	9	y	0.23	3	10	3	10	y	0.27	4	11	4	11	y	0.14	1	6	1	6	n	0.13	2	13	2	13	y	0.50	4	4	4	4	n	0.00	0	11	0	11	n	0.20	3	12	3	12	y	0.25	3	9	3	9	y	0.00	0	5	0	5	n	ENSMUSG00000035268.15	Pkig	chr2	protein_coding	protein kinase inhibitor, gamma
known_NIR_10676	chr2	163503526	163545406	+	163500412	163545406	A5SS	ENSMUST00000147385.8	known	0.00	0	37	0	37	n	0.00	0	37	0	37	n	0.00	0	32	0	32	n	0.00	0	34	0	34	n	0.00	0	47	0	47	n	0.00	0	33	0	33	n	0.09	4	40	4	40	y	0.00	0	18	0	18	n	0.00	0	16	0	16	n	0.00	0	38	0	38	n	0.00	0	23	0	23	n	0.00	0	32	0	32	n	ENSMUSG00000035268.15	Pkig	chr2	protein_coding	protein kinase inhibitor, gamma
known_NIR_10677	chr2	163503526	163545406	+	163501155	163545406	A5SS	ENSMUST00000099105.9	known	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.24	4	13	4	13	y	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	ENSMUSG00000035268.15	Pkig	chr2	protein_coding	protein kinase inhibitor, gamma
known_NIR_10678	chr2	163536076	163545406	+	163500412	163545406	A5SS	ENSMUST00000147385.8	known	0.00	0	37	0	37	n	0.12	5	37	5	37	y	0.18	7	32	7	32	y	0.08	3	34	3	34	y	0.10	5	47	5	47	y	0.08	3	33	3	33	y	0.11	5	40	5	40	y	0.10	2	18	2	18	y	0.06	1	16	1	16	n	0.05	2	38	2	38	y	0.04	1	23	1	23	n	0.03	1	32	1	32	n	ENSMUSG00000035268.15	Pkig	chr2	protein_coding	protein kinase inhibitor, gamma
known_NIR_10679	chr2	163536076	163545406	+	163500579	163545406	A5SS	ENSMUST00000126182.8	known	0.00	0	1	0	1	n	0.56	5	4	5	4	n	0.70	7	3	7	3	y	0.50	3	3	3	3	n	0.56	5	4	5	4	n	0.75	3	1	3	1	n	0.71	5	2	5	2	n	0.33	2	4	2	4	n	1.00	1	0	1	0	n	0.40	2	3	2	3	n	0.25	1	3	1	3	n	1.00	1	0	1	0	n	ENSMUSG00000035268.15	Pkig	chr2	protein_coding	protein kinase inhibitor, gamma
known_NIR_10680	chr2	163536076	163545406	+	163501155	163545406	A5SS	ENSMUST00000099105.9	known	0.00	0	7	0	7	n	0.42	5	7	5	7	y	0.44	7	9	7	9	y	0.23	3	10	3	10	y	0.31	5	11	5	11	y	0.33	3	6	3	6	n	0.28	5	13	5	13	y	0.33	2	4	2	4	n	0.08	1	11	1	11	n	0.14	2	12	2	12	y	0.10	1	9	1	9	n	0.17	1	5	1	5	n	ENSMUSG00000035268.15	Pkig	chr2	protein_coding	protein kinase inhibitor, gamma
known_NIR_10681	chr2	163896747;163900733	163900586;163902759	-	163896747	163902759	cassetteExon	ENSMUST00000132602.2	known	0.84	26.0	5	25;27	5	y	0.89	24.0	3	27;21	3	y	0.92	33.5	3	33;34	3	y	0.94	31.0	2	26;36	2	y	0.92	44.0	4	47;41	4	y	1.00	13.0	0	15;11	0	n	0.88	35.0	5	34;36	5	y	0.88	7.5	1	8;7	1	n	0.90	19.0	2	18;20	2	y	0.88	29.5	4	30;29	4	y	0.90	26.0	3	37;15	3	y	0.97	39.0	1	44;34	1	n	ENSMUSG00000018322.11	Tomm34	chr2	protein_coding	translocase of outer mitochondrial membrane 34
known_NIR_10682	chr2	163908589	163912833	-	163908589	163912387	A5SS	ENSMUST00000018466.4	known	0.75	9	3	9	3	y	0.73	11	4	11	4	y	0.40	8	12	8	12	y	0.75	21	7	21	7	y	0.65	13	7	13	7	y	0.73	8	3	8	3	y	0.67	8	4	8	4	y	0.67	6	3	6	3	n	0.38	5	8	5	8	y	0.71	10	4	10	4	y	0.80	8	2	8	2	y	0.23	3	10	3	10	y	ENSMUSG00000018322.11	Tomm34	chr2	protein_coding	translocase of outer mitochondrial membrane 34
known_NIR_10683	chr2	164273233	164285719	-	164273233	164285010	5pMXE	ENSMUST00000017153.4	known	0.03	32	1141	32	1141	y	0.02	15	894	15	894	y	0.00	1	991	1	991	n	0.01	16	1183	16	1183	y	0.02	22	1403	22	1403	y	0.01	7	768	7	768	y	0.03	38	1205	38	1205	y	0.01	5	754	5	754	y	0.03	27	771	27	771	y	0.02	26	1059	26	1059	y	0.03	28	821	28	821	y	0.02	27	1111	27	1111	y	ENSMUSG00000017009.4	Sdc4	chr2	protein_coding	syndecan 4
known_NIR_10684	chr2	164305288	164309068	+	164305288	164306278	3pMXE	ENSMUST00000109352.8	known	0.02	4	201	4	201	y	0.01	2	225	2	225	y	0.02	6	366	6	366	y	0.01	1	196	1	196	n	0.02	7	281	7	281	y	0.02	4	237	4	237	y	0.01	2	305	2	305	y	0.00	0	179	0	179	n	0.01	2	157	2	157	y	0.01	3	281	3	281	y	0.00	1	215	1	215	n	0.00	1	217	1	217	n	ENSMUSG00000045503.17	Sys1	chr2	protein_coding	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)
known_NIR_10685	chr2	164305288	164314058	+	164305288	164306278	3pMXE	ENSMUST00000109352.8	known	0.00	1	201	1	201	n	0.00	0	225	0	225	n	0.00	0	366	0	366	n	0.00	0	196	0	196	n	0.00	0	281	0	281	n	0.00	0	237	0	237	n	0.00	0	305	0	305	n	0.00	0	179	0	179	n	0.01	2	157	2	157	y	0.00	0	281	0	281	n	0.00	0	215	0	215	n	0.00	1	217	1	217	n	ENSMUSG00000045503.17	Sys1	chr2	protein_coding	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)
known_NIR_10686	chr2	164305288	164314058	+	164305288;164309247	164306278;164314058	ES	ENSMUST00000125086.2	known	0.01	1	101.0	1	201;1	n	0.00	0	112.5	0	225;0	n	0.00	0	186.0	0	366;6	n	0.00	0	100.5	0	196;5	n	0.00	0	143.5	0	281;6	n	0.00	0	121.0	0	237;5	n	0.00	0	155.0	0	305;5	n	0.00	0	91.0	0	179;3	n	0.02	2	82.0	2	157;7	y	0.00	0	144.5	0	281;8	n	0.00	0	108.0	0	215;1	n	0.01	1	113.0	1	217;9	n	ENSMUSG00000045503.17	Sys1	chr2	protein_coding	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)
known_NIR_10687	chr2	164305288	164314058	+	164305288;164309247	164309068;164314058	ES	ENSMUST00000138268.8	known	0.29	1	2.5	1	4;1	n	0.00	0	1.0	0	2;0	n	0.00	0	6.0	0	6;6	n	0.00	0	3.0	0	1;5	n	0.00	0	6.5	0	7;6	n	0.00	0	4.5	0	4;5	n	0.00	0	3.5	0	2;5	n	0.00	0	1.5	0	0;3	n	0.31	2	4.5	2	2;7	y	0.00	0	5.5	0	3;8	n	0.00	0	1.0	0	1;1	n	0.17	1	5.0	1	1;9	n	ENSMUSG00000045503.17	Sys1	chr2	protein_coding	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)
known_NIR_10688	chr2	164305288	164330162	+	164305288	164306278	3pMXE	ENSMUST00000109352.8	known	0.00	0	201	0	201	n	0.01	2	225	2	225	y	0.00	0	366	0	366	n	0.01	1	196	1	196	n	0.00	0	281	0	281	n	0.00	0	237	0	237	n	0.00	1	305	1	305	n	0.01	2	179	2	179	y	0.00	0	157	0	157	n	0.00	1	281	1	281	n	0.00	0	215	0	215	n	0.00	0	217	0	217	n	ENSMUSG00000045503.17	Sys1	chr2	protein_coding	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)
known_NIR_10689	chr2	164328607	164330162	+	164305288	164330162	A5SS	ENSMUST00000164863.2	known	1.00	9	0	9	0	n	0.82	9	2	9	2	y	1.00	20	0	20	0	n	0.95	20	1	20	1	n	1.00	32	0	32	0	n	1.00	25	0	25	0	n	0.94	15	1	15	1	n	0.88	15	2	15	2	y	1.00	6	0	6	0	n	0.92	11	1	11	1	n	1.00	4	0	4	0	n	1.00	12	0	12	0	n	ENSMUSG00000090996.2	Gm20458	chr2	protein_coding	predicted gene 20458
known_NIR_10690	chr2	164328607	164330162	+	164328163	164330162	A5SS	ENSMUST00000109350.9	known	1.00	9	0	9	0	n	1.00	9	0	9	0	n	0.91	20	2	20	2	y	1.00	20	0	20	0	n	1.00	32	0	32	0	n	1.00	25	0	25	0	n	1.00	15	0	15	0	n	1.00	15	0	15	0	n	1.00	6	0	6	0	n	1.00	11	0	11	0	n	1.00	4	0	4	0	n	1.00	12	0	12	0	n	ENSMUSG00000017734.16	Dbndd2	chr2	protein_coding	dysbindin (dystrobrevin binding protein 1) domain containing 2
known_NIR_10691	chr2	164328607	164330162	+	164328924	164330162	5pMXE	ENSMUST00000109349.9	known	1.00	9	0	9	0	n	0.82	9	2	9	2	y	1.00	20	0	20	0	n	1.00	20	0	20	0	n	1.00	32	0	32	0	n	0.93	25	2	25	2	y	0.88	15	2	15	2	y	1.00	15	0	15	0	n	1.00	6	0	6	0	n	1.00	11	0	11	0	n	1.00	4	0	4	0	n	1.00	12	0	12	0	n	ENSMUSG00000017734.16	Dbndd2	chr2	protein_coding	dysbindin (dystrobrevin binding protein 1) domain containing 2
known_NIR_10692	chr2	164404724	164407712	+	164404724	164405228	3pMXE	ENSMUST00000146270.2	known	0.04	3	80	3	80	y	0.00	0	59	0	59	n	0.01	2	255	2	255	y	0.02	1	56	1	56	n	0.03	4	122	4	122	y	0.02	2	100	2	100	y	0.04	8	175	8	175	y	0.01	1	119	1	119	n	0.00	0	34	0	34	n	0.01	1	110	1	110	n	0.00	0	49	0	49	n	0.00	0	32	0	32	n	ENSMUSG00000017723.12	Wfdc2	chr2	protein_coding	WAP four-disulfide core domain 2
known_NIR_10693	chr2	164404724;164405371	164405228;164407712	+	164404724	164407712	cassetteExon	ENSMUST00000109344.9	known	0.93	40.0	3	80;0	3	n	1.00	29.5	0	59;0	0	n	0.98	129.0	2	255;3	2	y	0.97	28.0	1	56;0	1	n	0.94	61.5	4	122;1	4	n	0.96	51.0	2	100;2	2	y	0.92	89.0	8	175;3	8	y	0.98	60.0	1	119;1	1	n	1.00	17.0	0	34;0	0	n	0.98	55.5	1	110;1	1	n	1.00	24.5	0	49;0	0	n	1.00	16.0	0	32;0	0	n	ENSMUSG00000017723.12	Wfdc2	chr2	protein_coding	WAP four-disulfide core domain 2
known_NIR_10694	chr2	164405371	164407712	+	164405371	164405977	3pMXE	ENSMUST00000125051.2	known	0.00	0	65	0	65	n	0.00	0	73	0	73	n	0.01	3	254	3	254	y	0.00	0	70	0	70	n	0.01	1	124	1	124	n	0.02	2	87	2	87	y	0.02	3	186	3	186	y	0.01	1	98	1	98	n	0.00	0	42	0	42	n	0.01	1	73	1	73	n	0.00	0	56	0	56	n	0.00	0	41	0	41	n	ENSMUSG00000017723.12	Wfdc2	chr2	protein_coding	WAP four-disulfide core domain 2
known_NIR_10695	chr2	164405371	164407712	+	164405371;164406132	164405977;164407712	ES	ENSMUST00000017867.10	known	0.00	0	73.0	0	65;81	n	0.00	0	81.0	0	73;89	n	0.01	3	235.0	3	254;216	y	0.00	0	71.5	0	70;73	n	0.01	1	114.5	1	124;105	n	0.02	2	91.5	2	87;96	y	0.01	3	204.0	3	186;222	y	0.01	1	113.5	1	98;129	n	0.00	0	39.0	0	42;36	n	0.01	1	91.0	1	73;109	n	0.00	0	52.5	0	56;49	n	0.00	0	42.5	0	41;44	n	ENSMUSG00000017723.12	Wfdc2	chr2	protein_coding	WAP four-disulfide core domain 2
known_NIR_10696	chr2	164406132	164407712	+	164404724	164407712	A5SS	ENSMUST00000109344.9	known	0.96	81	3	81	3	y	1.00	89	0	89	0	n	0.99	216	2	216	2	y	0.99	73	1	73	1	n	0.96	105	4	105	4	y	0.98	96	2	96	2	y	0.97	222	8	222	8	y	0.99	129	1	129	1	n	1.00	36	0	36	0	n	0.99	109	1	109	1	n	1.00	49	0	49	0	n	1.00	44	0	44	0	n	ENSMUSG00000017723.12	Wfdc2	chr2	protein_coding	WAP four-disulfide core domain 2
known_NIR_10697	chr2	164628768	164633633	+	164633488	164633633	A5SS&ES	ENSMUST00000174070.8	known	1.00	11	0	11	0	n	0.90	9	1	9	1	n	1.00	8	0	8	0	n	0.83	10	2	10	2	y	1.00	17	0	17	0	n	1.00	4	0	4	0	n	0.95	20	1	20	1	n	0.71	5	2	5	2	n	1.00	12	0	12	0	n	0.81	13	3	13	3	y	1.00	12	0	12	0	n	1.00	8	0	8	0	n	ENSMUSG00000050373.14	Snx21	chr2	protein_coding	sorting nexin family member 21
known_NIR_10698	chr2	164628775	164633633	+	164628768	164633633	A5SS	ENSMUST00000172577.8	known	0.63	19	11	19	11	y	0.47	8	9	8	9	y	0.67	16	8	16	8	y	0.60	15	10	15	10	y	0.43	13	17	13	17	y	0.56	5	4	5	4	n	0.55	24	20	24	20	y	0.64	9	5	9	5	y	0.59	17	12	17	12	y	0.62	21	13	21	13	y	0.56	15	12	15	12	y	0.72	21	8	21	8	y	ENSMUSG00000050373.14	Snx21	chr2	protein_coding	sorting nexin family member 21
known_NIR_10699	chr2	164628775	164633633	+	164628775;164633488	164633478;164633633	ES	ENSMUST00000174070.8	known	1.00	19	0.0	19	0;0	n	0.94	8	0.5	8	0;1	n	1.00	16	0.0	16	0;0	n	0.88	15	2.0	15	2;2	y	1.00	13	0.0	13	0;0	n	1.00	5	0.0	5	0;0	n	0.96	24	1.0	24	1;1	n	0.82	9	2.0	9	2;2	y	1.00	17	0.0	17	0;0	n	0.89	21	2.5	21	2;3	y	1.00	15	0.0	15	0;0	n	1.00	21	0.0	21	0;0	n	ENSMUSG00000050373.14	Snx21	chr2	protein_coding	sorting nexin family member 21
known_NIR_10700	chr2	164628775	164633633	+	164633488	164633633	5pMXE	ENSMUST00000173945.2	known	1.00	19	0	19	0	n	0.89	8	1	8	1	n	1.00	16	0	16	0	n	0.88	15	2	15	2	y	1.00	13	0	13	0	n	1.00	5	0	5	0	n	0.96	24	1	24	1	n	0.82	9	2	9	2	y	1.00	17	0	17	0	n	0.88	21	3	21	3	y	1.00	15	0	15	0	n	1.00	21	0	21	0	n	ENSMUSG00000050373.14	Snx21	chr2	protein_coding	sorting nexin family member 21
known_NIR_10701	chr2	164634930	164637002	-	164634930	164636905	A5SS	ENSMUST00000134611.4	known	0.00	0	81	0	81	n	0.03	3	97	3	97	y	0.06	5	76	5	76	y	0.00	0	95	0	95	n	0.03	3	111	3	111	y	0.00	0	38	0	38	n	0.00	0	162	0	162	n	0.10	5	44	5	44	y	0.04	3	67	3	67	y	0.05	5	91	5	91	y	0.00	0	107	0	107	n	0.01	1	66	1	66	n	ENSMUSG00000017307.17	Acot8	chr2	protein_coding	acyl-CoA thioesterase 8
known_NIR_10702	chr2	164641865;164645053	164644917;164646610	-	164641865	164646610	cassetteExon	ENSMUST00000134611.4	known	0.93	57.5	4	61;54	4	y	0.92	71.5	6	81;62	6	y	0.99	77.5	1	77;78	1	n	0.95	84.5	4	95;74	4	y	0.86	78.0	13	87;69	13	y	0.92	35.0	3	41;29	3	y	0.89	100.5	13	109;92	13	y	0.84	48.0	9	52;44	9	y	0.98	55.5	1	68;43	1	n	0.88	88.5	12	102;75	12	y	0.96	68.5	3	71;66	3	y	0.93	63.0	5	74;52	5	y	ENSMUSG00000017307.17	Acot8	chr2	protein_coding	acyl-CoA thioesterase 8
known_NIR_10703	chr2	164675116	164675644	+	164675116	164675612	A3SS	ENSMUST00000133502.2	known	0.94	17	1	17	1	n	0.86	6	1	6	1	n	0.91	10	1	10	1	n	1.00	15	0	15	0	n	1.00	12	0	12	0	n	1.00	6	0	6	0	n	1.00	15	0	15	0	n	1.00	11	0	11	0	n	1.00	6	0	6	0	n	0.92	11	1	11	1	n	1.00	7	0	7	0	n	0.89	16	2	16	2	y	ENSMUSG00000017760.17	Ctsa	chr2	protein_coding	cathepsin A
known_NIR_10704	chr2	164675116	164675728	+	164675116	164675644	A3SS	ENSMUST00000103092.9	known	0.06	1	17	1	17	n	0.33	3	6	3	6	n	0.17	2	10	2	10	y	0.29	6	15	6	15	y	0.33	6	12	6	12	y	0.00	0	6	0	6	n	0.29	6	15	6	15	y	0.15	2	11	2	11	y	0.33	3	6	3	6	n	0.39	7	11	7	11	y	0.36	4	7	4	7	y	0.06	1	16	1	16	n	ENSMUSG00000017760.17	Ctsa	chr2	protein_coding	cathepsin A
known_NIR_10705	chr2	164675116	164675950	+	164675116	164675612	3pMXE	ENSMUST00000133502.2	known	0.93	13	1	13	1	n	0.93	13	1	13	1	n	0.67	2	1	2	1	n	1.00	20	0	20	0	n	1.00	12	0	12	0	n	-	-	-	-	-	-	1.00	16	0	16	0	n	1.00	4	0	4	0	n	1.00	12	0	12	0	n	0.95	18	1	18	1	n	1.00	19	0	19	0	n	0.94	29	2	29	2	y	ENSMUSG00000017760.17	Ctsa	chr2	protein_coding	cathepsin A
known_NIR_10706	chr2	164675116	164675950	+	164675770	164675950	5pMXE	ENSMUST00000146525.2	known	0.08	13	159	13	159	y	0.08	13	149	13	149	y	0.01	2	171	2	171	y	0.09	20	194	20	194	y	0.05	12	245	12	245	y	0.00	0	120	0	120	n	0.07	16	201	16	201	y	0.03	4	140	4	140	y	0.09	12	116	12	116	y	0.07	18	242	18	242	y	0.13	19	128	19	128	y	0.14	29	185	29	185	y	ENSMUSG00000017760.17	Ctsa	chr2	protein_coding	cathepsin A
known_NIR_10707	chr2	164675116;164675770	164675612;164675950	+	164675116	164675950	cassetteExon	ENSMUST00000103093.10	known	0.86	80.0	13	1;159	13	n	0.85	75.0	13	1;149	13	n	0.98	86.0	2	1;171	2	n	0.83	97.0	20	0;194	20	n	0.91	122.5	12	0;245	12	n	1.00	60.0	0	0;120	0	n	0.86	100.5	16	0;201	16	n	0.95	70.0	4	0;140	4	n	0.83	58.0	12	0;116	12	n	0.87	121.5	18	1;242	18	n	0.77	64.0	19	0;128	19	n	0.76	93.5	29	2;185	29	y	ENSMUSG00000017760.17	Ctsa	chr2	protein_coding	cathepsin A
known_NIR_10708	chr2	164675116;164675770	164675644;164675950	+	164675116	164675950	cassetteExon	ENSMUST00000103093.10	known	0.87	88.0	13	17;159	13	y	0.86	77.5	13	6;149	13	y	0.98	90.5	2	10;171	2	y	0.84	104.5	20	15;194	20	y	0.91	128.5	12	12;245	12	y	1.00	63.0	0	6;120	0	n	0.87	108.0	16	15;201	16	y	0.95	75.5	4	11;140	4	y	0.84	61.0	12	6;116	12	y	0.88	126.5	18	11;242	18	y	0.78	67.5	19	7;128	19	y	0.78	100.5	29	16;185	29	y	ENSMUSG00000017760.17	Ctsa	chr2	protein_coding	cathepsin A
known_NIR_10709	chr2	164675116;164675770	164675728;164675950	+	164675116	164675950	cassetteExon	ENSMUST00000103093.10	known	0.86	80.0	13	1;159	13	n	0.85	76.0	13	3;149	13	y	0.98	86.5	2	2;171	2	y	0.83	100.0	20	6;194	20	y	0.91	125.5	12	6;245	12	y	1.00	60.0	0	0;120	0	n	0.87	103.5	16	6;201	16	y	0.95	71.0	4	2;140	4	y	0.83	59.5	12	3;116	12	y	0.87	124.5	18	7;242	18	y	0.78	66.0	19	4;128	19	y	0.76	93.0	29	1;185	29	n	ENSMUSG00000017760.17	Ctsa	chr2	protein_coding	cathepsin A
known_NIR_10710	chr2	164676844	164677550	+	164676844	164677076	3pMXE	ENSMUST00000130959.8	known	0.00	0	389	0	389	n	0.00	0	348	0	348	n	0.00	0	341	0	341	n	0.01	2	341	2	341	y	0.00	0	534	0	534	n	0.00	0	224	0	224	n	0.00	0	432	0	432	n	0.00	0	299	0	299	n	0.00	0	308	0	308	n	0.00	0	442	0	442	n	0.00	0	334	0	334	n	0.01	4	385	4	385	y	ENSMUSG00000017760.17	Ctsa	chr2	protein_coding	cathepsin A
known_NIR_10711	chr2	164676844	164677550	+	164676844;164677231	164677076;164677550	ES	ENSMUST00000103093.10	known	0.00	0	378.0	0	389;367	n	0.00	0	357.5	0	348;367	n	0.00	0	369.0	0	341;397	n	0.01	2	373.5	2	341;406	y	0.00	0	509.5	0	534;485	n	0.00	0	227.0	0	224;230	n	0.00	0	446.0	0	432;460	n	0.00	0	273.5	0	299;248	n	0.00	0	322.0	0	308;336	n	0.00	0	474.0	0	442;506	n	0.00	0	316.5	0	334;299	n	0.01	4	428.0	4	385;471	y	ENSMUSG00000017760.17	Ctsa	chr2	protein_coding	cathepsin A
known_NIR_10712	chr2	164698917	164699465	-	164698917	164699504	A5SS	ENSMUST00000109317.10	known	0.04	2	55	2	55	y	0.02	1	40	1	40	n	0.03	3	95	3	95	y	0.00	0	41	0	41	n	0.02	1	53	1	53	n	0.04	1	27	1	27	n	0.00	0	49	0	49	n	0.05	2	38	2	38	y	0.00	0	23	0	23	n	0.00	0	63	0	63	n	0.04	2	53	2	53	y	0.07	3	40	3	40	y	ENSMUSG00000017754.14	Pltp	chr2	protein_coding	phospholipid transfer protein
known_NIR_10713	chr2	164722018	164724695	+	164721409	164724695	A5SS	ENSMUST00000145327.2	known	0.10	5	45	5	45	y	0.05	2	40	2	40	y	0.04	2	43	2	43	y	0.08	3	36	3	36	y	0.05	5	103	5	103	y	0.08	4	45	4	45	y	0.06	3	46	3	46	y	0.20	9	35	9	35	y	0.19	6	25	6	25	y	0.08	5	55	5	55	y	0.13	7	47	7	47	y	0.14	9	57	9	57	y	ENSMUSG00000039849.7	Pcif1	chr2	protein_coding	phosphorylated CTD interacting factor 1
known_NIR_10714	chr2	164741951	164742198	-	164741951;164742107	164742031;164742198	ES	ENSMUST00000041361.14	known	0.10	2	18.5	2	14;23	y	0.00	0	13.5	0	12;15	n	0.00	0	28.5	0	30;27	n	0.00	0	25.5	0	31;20	n	0.00	0	30.5	0	26;35	n	0.00	0	11.5	0	12;11	n	0.00	0	24.0	0	23;25	n	0.00	0	10.0	0	7;13	n	0.00	0	13.5	0	16;11	n	0.00	0	21.5	0	19;24	n	0.00	0	8.5	0	10;7	n	0.00	0	21.5	0	23;20	n	ENSMUSG00000039834.18	Zfp335	chr2	protein_coding	zinc finger protein 335
known_NIR_10715	chr2	164844091	164844536	-	164844091	164844559	A5SS	ENSMUST00000040381.15	known	0.14	3	18	3	18	y	0.15	2	11	2	11	y	0.22	5	18	5	18	y	0.21	3	11	3	11	y	0.28	5	13	5	13	y	0.18	2	9	2	9	y	0.12	3	21	3	21	y	0.18	3	14	3	14	y	0.20	3	12	3	12	y	0.19	3	13	3	13	y	0.20	4	16	4	16	y	0.20	2	8	2	8	y	ENSMUSG00000039804.16	Ncoa5	chr2	protein_coding	nuclear receptor coactivator 5
known_NIR_10716	chr2	164855082	164876603	-	164855082;164865132	164865066;164876603	ES	ENSMUST00000040381.15	known	0.00	0	9.0	0	13;5	n	0.22	4	14.0	4	18;10	y	0.09	2	21.0	2	23;19	y	0.00	0	24.5	0	34;15	n	0.09	2	21.0	2	31;11	y	0.13	2	13.0	2	18;8	y	0.18	3	14.0	3	18;10	y	0.00	0	11.5	0	17;6	n	0.00	0	6.5	0	5;8	n	0.14	2	12.5	2	15;10	y	0.22	4	14.0	4	19;9	y	0.10	2	18.5	2	26;11	y	ENSMUSG00000039804.16	Ncoa5	chr2	protein_coding	nuclear receptor coactivator 5
known_NIR_10717	chr2	164855082	164876603	-	164865132	164876603	3pMXE	ENSMUST00000141663.2	known	0.00	0	5	0	5	n	0.29	4	10	4	10	y	0.10	2	19	2	19	y	0.00	0	15	0	15	n	0.15	2	11	2	11	y	0.20	2	8	2	8	y	0.23	3	10	3	10	y	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.17	2	10	2	10	y	0.31	4	9	4	9	y	0.15	2	11	2	11	y	ENSMUSG00000039804.16	Ncoa5	chr2	protein_coding	nuclear receptor coactivator 5
known_NIR_10718	chr2	165124782	165125169	-	165124853	165125169	A3SS	ENSMUST00000109299.8	known	0.00	0	56	0	56	n	0.02	1	63	1	63	n	0.00	0	122	0	122	n	0.00	0	71	0	71	n	0.00	0	109	0	109	n	0.01	1	76	1	76	n	0.00	0	87	0	87	n	0.02	2	80	2	80	y	0.00	0	51	0	51	n	0.01	1	86	1	86	n	0.00	0	70	0	70	n	0.00	0	82	0	82	n	ENSMUSG00000017664.17	Slc35c2	chr2	protein_coding	solute carrier family 35, member C2
known_NIR_10719	chr2	165125455	165128401	-	165125455	165129704	A5SS	ENSMUST00000156134.8	known	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.17	2	10	2	10	y	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	ENSMUSG00000017664.17	Slc35c2	chr2	protein_coding	solute carrier family 35, member C2
known_NIR_10720	chr2	165125455	165129704	-	165125455	165129604	5pMXE	ENSMUST00000109299.8	known	1.00	7	0	7	0	n	1.00	7	0	7	0	n	0.86	12	2	12	2	y	1.00	10	0	10	0	n	0.80	8	2	8	2	y	0.89	8	1	8	1	n	0.88	14	2	14	2	y	0.90	9	1	9	1	n	0.75	6	2	6	2	n	0.75	6	2	6	2	n	1.00	10	0	10	0	n	1.00	11	0	11	0	n	ENSMUSG00000017664.17	Slc35c2	chr2	protein_coding	solute carrier family 35, member C2
known_NIR_10721	chr2	165125455	165129704	-	165125520	165129704	A3SS	ENSMUST00000017808.14	known	0.64	7	4	7	4	y	0.64	7	4	7	4	y	0.60	12	8	12	8	y	0.45	10	12	10	12	y	0.67	8	4	8	4	y	0.57	8	6	8	6	y	0.74	14	5	14	5	y	0.50	9	9	9	9	y	0.60	6	4	6	4	y	0.67	6	3	6	3	n	0.62	10	6	10	6	y	0.73	11	4	11	4	y	ENSMUSG00000017664.17	Slc35c2	chr2	protein_coding	solute carrier family 35, member C2
known_NIR_10722	chr2	165125455	165129704	-	165125523	165129704	A3SS	ENSMUST00000132270.8	known	0.29	7	17	7	17	y	0.37	7	12	7	12	y	0.40	12	18	12	18	y	0.45	10	12	10	12	y	0.29	8	20	8	20	y	0.40	8	12	8	12	y	0.54	14	12	14	12	y	0.41	9	13	9	13	y	0.43	6	8	6	8	y	0.33	6	12	6	12	y	0.83	10	2	10	2	y	0.50	11	11	11	11	y	ENSMUSG00000017664.17	Slc35c2	chr2	protein_coding	solute carrier family 35, member C2
known_NIR_10723	chr2	165125520	165129704	-	165125520	165129604	5pMXE	ENSMUST00000109298.8	known	0.44	4	5	4	5	n	0.50	4	4	4	4	n	0.73	8	3	8	3	y	0.80	12	3	12	3	y	0.57	4	3	4	3	n	0.86	6	1	6	1	n	0.71	5	2	5	2	n	0.82	9	2	9	2	y	0.67	4	2	4	2	n	0.43	3	4	3	4	n	0.75	6	2	6	2	n	0.80	4	1	4	1	n	ENSMUSG00000017664.17	Slc35c2	chr2	protein_coding	solute carrier family 35, member C2
known_NIR_10724	chr2	165125520	165129704	-	165125523	165129704	A3SS	ENSMUST00000132270.8	known	0.19	4	17	4	17	y	0.25	4	12	4	12	y	0.31	8	18	8	18	y	0.50	12	12	12	12	y	0.17	4	20	4	20	y	0.33	6	12	6	12	y	0.29	5	12	5	12	y	0.41	9	13	9	13	y	0.33	4	8	4	8	y	0.20	3	12	3	12	y	0.75	6	2	6	2	n	0.27	4	11	4	11	y	ENSMUSG00000017664.17	Slc35c2	chr2	protein_coding	solute carrier family 35, member C2
known_NIR_10725	chr2	165136231	165136934	-	165136243	165136934	A3SS	ENSMUST00000103091.9	known	0.00	0	17	0	17	n	0.00	0	21	0	21	n	0.04	2	45	2	45	y	0.00	0	19	0	19	n	0.00	0	23	0	23	n	0.00	0	12	0	12	n	0.00	0	28	0	28	n	0.00	0	20	0	20	n	0.00	0	11	0	11	n	0.00	0	20	0	20	n	0.00	0	17	0	17	n	0.00	0	37	0	37	n	ENSMUSG00000017670.17	Elmo2	chr2	protein_coding	engulfment and cell motility 2
known_NIR_10726	chr2	165269053	165275957	-	165269053;165272253	165272128;165275957	ES	ENSMUST00000029208.15	known	0.00	0	68.0	0	67;69	n	0.03	2	63.0	2	68;58	y	0.00	0	27.5	0	23;32	n	0.00	0	58.0	0	64;52	n	0.03	2	76.5	2	59;94	y	0.00	0	26.0	0	32;20	n	0.00	0	74.5	0	82;67	n	0.00	0	28.0	0	32;24	n	0.04	2	49.5	2	44;55	y	0.00	0	75.0	0	74;76	n	0.02	1	41.5	1	39;44	n	0.00	0	45.5	0	47;44	n	ENSMUSG00000018459.16	Slc13a3	chr2	protein_coding	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3
known_NIR_10727	chr2	165627658	165633825	-	165627658;165629167	165629084;165633825	ES	ENSMUST00000109266.11	known	0.08	2	24.0	2	27;21	y	0.07	1	13.0	1	16;10	n	0.10	2	17.5	2	18;17	y	0.19	5	21.0	5	21;21	y	0.09	2	20.5	2	24;17	y	0.12	1	7.5	1	6;9	n	0.00	0	23.0	0	30;16	n	0.00	0	16.5	0	17;16	n	0.00	0	12.5	0	15;10	n	0.20	5	20.0	5	26;14	y	0.00	0	22.0	0	23;21	n	0.00	0	12.0	0	18;6	n	ENSMUSG00000039671.19	Zmynd8	chr2	protein_coding	zinc finger, MYND-type containing 8
known_NIR_10728	chr2	165647297	165649439	-	165647297	165649595	A5SS	ENSMUST00000109266.11	known	0.23	3	10	3	10	y	0.11	1	8	1	8	n	0.37	7	12	7	12	y	0.05	1	21	1	21	n	0.16	5	26	5	26	y	0.08	1	11	1	11	n	0.22	5	18	5	18	y	0.08	1	12	1	12	n	0.50	8	8	8	8	y	0.39	7	11	7	11	y	0.26	6	17	6	17	y	0.47	7	8	7	8	y	ENSMUSG00000039671.19	Zmynd8	chr2	protein_coding	zinc finger, MYND-type containing 8
known_NIR_10729	chr2	165688084	165693920	-	165688159	165693920	A3SS	ENSMUST00000109266.11	known	0.38	6	10	6	10	y	0.54	7	6	7	6	y	0.33	6	12	6	12	y	0.61	14	9	14	9	y	0.57	27	20	27	20	y	0.36	5	9	5	9	y	0.57	12	9	12	9	y	0.43	9	12	9	12	y	0.53	10	9	10	9	y	0.55	11	9	11	9	y	0.28	7	18	7	18	y	0.71	20	8	20	8	y	ENSMUSG00000039671.19	Zmynd8	chr2	protein_coding	zinc finger, MYND-type containing 8
known_NIR_10730	chr2	165694068	165717625	-	165694068	165699975	5pMXE	ENSMUST00000109266.11	known	1.00	11	0	11	0	n	1.00	3	0	3	0	n	0.93	13	1	13	1	n	0.92	12	1	12	1	n	1.00	21	0	21	0	n	0.94	15	1	15	1	n	1.00	20	0	20	0	n	1.00	14	0	14	0	n	1.00	5	0	5	0	n	1.00	21	0	21	0	n	1.00	13	0	13	0	n	0.74	14	5	14	5	y	ENSMUSG00000039671.19	Zmynd8	chr2	protein_coding	zinc finger, MYND-type containing 8
known_NIR_10731	chr2	165694068;165694799	165694788;165717625	-	165694068	165717625	cassetteExon	ENSMUST00000177633.8	known	0.12	1.5	11	2;1	11	n	0.00	0.0	3	0;0	3	n	0.13	2.0	13	1;3	13	n	0.08	1.0	12	1;1	12	n	0.02	0.5	21	0;1	21	n	0.03	0.5	15	1;0	15	n	0.02	0.5	20	0;1	20	n	0.18	3.0	14	3;3	14	y	0.17	1.0	5	1;1	5	n	0.11	2.5	21	2;3	21	y	0.00	0.0	13	0;0	13	n	0.03	0.5	14	0;1	14	n	ENSMUSG00000039671.19	Zmynd8	chr2	protein_coding	zinc finger, MYND-type containing 8
known_NIR_10732	chr2	165717695	165726099	-	165717695	165726528	A5SS	ENSMUST00000177633.8	known	0.20	1	4	1	4	n	0.50	1	1	1	1	n	0.33	3	6	3	6	n	0.10	1	9	1	9	n	0.10	1	9	1	9	n	0.14	1	6	1	6	n	0.00	0	7	0	7	n	0.60	6	4	6	4	y	0.00	0	8	0	8	n	0.38	3	5	3	5	n	0.43	3	4	3	4	n	0.60	3	2	3	2	n	ENSMUSG00000039671.19	Zmynd8	chr2	protein_coding	zinc finger, MYND-type containing 8
known_NIR_10733	chr2	165717695	165738773	-	165717695	165726528	5pMXE	ENSMUST00000177633.8	known	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.10	1	9	1	9	n	0.25	3	9	3	9	y	0.00	0	6	0	6	n	0.22	2	7	2	7	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.38	3	5	3	5	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000039671.19	Zmynd8	chr2	protein_coding	zinc finger, MYND-type containing 8
known_NIR_10734	chr2	165909565	165910249	+	165909565	165910252	A3SS	ENSMUST00000109252.8	known	0.13	2	13	2	13	y	0.54	7	6	7	6	y	0.58	11	8	11	8	y	0.30	6	14	6	14	y	0.50	18	18	18	18	y	0.55	6	5	6	5	y	0.27	6	16	6	16	y	0.38	6	10	6	10	y	0.54	7	6	7	6	y	0.59	13	9	13	9	y	0.56	10	8	10	8	y	0.43	12	16	12	16	y	ENSMUSG00000027678.18	Ncoa3	chr2	protein_coding	nuclear receptor coactivator 3
known_NIR_10735	chr2	166678377	166687370	+	166678377;166684673	166684605;166687370	ES	ENSMUST00000099078.10	known	0.06	1	16.0	1	20;12	n	0.00	0	5.5	0	8;3	n	0.13	4	26.5	4	35;18	y	0.00	0	20.0	0	23;17	n	0.02	1	48.0	1	48;48	n	0.00	0	18.0	0	17;19	n	0.04	1	21.5	1	16;27	n	0.04	1	23.5	1	28;19	n	0.00	0	13.0	0	14;12	n	0.03	1	28.0	1	31;25	n	0.07	1	12.5	1	15;10	n	0.00	0	26.5	0	30;23	n	ENSMUSG00000074582.11	Arfgef2	chr2	protein_coding	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)
known_NIR_10736	chr2	166791279	166791620	-	166791279	166791664	A5SS	ENSMUST00000109235.8	known	0.02	3	123	3	123	y	0.02	2	131	2	131	y	0.00	0	119	0	119	n	0.04	6	150	6	150	y	0.01	1	177	1	177	n	0.00	0	60	0	60	n	0.01	2	193	2	193	y	0.02	2	82	2	82	y	0.02	2	113	2	113	y	0.01	2	160	2	160	y	0.02	3	141	3	141	y	0.01	1	158	1	158	n	ENSMUSG00000039536.17	Stau1	chr2	protein_coding	staufen double-stranded RNA binding protein 1
known_NIR_10737	chr2	166795265	166796820	-	166795271	166796820	A3SS	ENSMUST00000109235.8	known	0.00	0	107	0	107	n	0.00	0	80	0	80	n	0.00	0	104	0	104	n	0.02	3	134	3	134	y	0.00	0	168	0	168	n	0.00	0	59	0	59	n	0.00	0	138	0	138	n	0.00	0	81	0	81	n	0.00	0	81	0	81	n	0.03	4	140	4	140	y	0.00	0	86	0	86	n	0.00	0	133	0	133	n	ENSMUSG00000039536.17	Stau1	chr2	protein_coding	staufen double-stranded RNA binding protein 1
known_NIR_10738	chr2	166797050	166801943	-	166797032	166801943	A3SS	ENSMUST00000109235.8	known	0.41	37	54	37	54	y	0.52	34	31	34	31	y	0.31	36	79	36	79	y	0.45	59	72	59	72	y	0.47	62	70	62	70	y	0.39	22	34	22	34	y	0.37	45	78	45	78	y	0.39	22	34	22	34	y	0.48	41	44	41	44	y	0.42	54	74	54	74	y	0.49	49	50	49	50	y	0.45	59	71	59	71	y	ENSMUSG00000039536.17	Stau1	chr2	protein_coding	staufen double-stranded RNA binding protein 1
known_NIR_10739	chr2	166902062	166902252	-	166902062	166904430	A5SS	ENSMUST00000048988.14	known	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.20	3	12	3	12	y	0.14	3	18	3	18	y	0.14	2	12	2	12	y	0.25	1	3	1	3	n	0.30	3	7	3	7	y	0.57	4	3	4	3	n	0.42	5	7	5	7	y	0.12	1	7	1	7	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	ENSMUSG00000039501.15	Znfx1	chr2	protein_coding	zinc finger, NFX1-type containing 1
known_NIR_10740	chr2	166907137	166907233	+	166907137	166907354	A3SS	ENSMUST00000189909.7	known	0.00	0	64	0	64	n	0.00	0	68	0	68	n	0.00	0	74	0	74	n	0.00	0	93	0	93	n	0.00	0	55	0	55	n	0.00	0	33	0	33	n	0.00	0	102	0	102	n	0.00	0	30	0	30	n	0.00	0	66	0	66	n	0.02	2	104	2	104	y	0.00	0	97	0	97	n	0.00	0	108	0	108	n	ENSMUSG00000074578.15	Zfas1	chr2	lncRNA	zinc finger, NFX1-type containing 1, antisense RNA 1
known_NIR_10741	chr2	167266217	167283049	+	167266217	167276702	3pMXE	ENSMUST00000124139.8	known	0.00	0	9	0	9	n	0.00	0	16	0	16	n	0.00	0	34	0	34	n	0.07	2	27	2	27	y	0.02	1	46	1	46	n	0.00	0	18	0	18	n	0.03	1	30	1	30	n	0.00	0	21	0	21	n	0.00	0	19	0	19	n	0.10	5	44	5	44	y	0.06	1	15	1	15	n	0.00	0	41	0	41	n	ENSMUSG00000039463.15	Slc9a8	chr2	protein_coding	solute carrier family 9 (sodium/hydrogen exchanger), member 8
known_NIR_10742	chr2	167266217	167283049	+	167266217;167276782	167276702;167283049	ES	ENSMUST00000047815.13	known	0.00	0	15.0	0	9;21	n	0.00	0	15.5	0	16;15	n	0.00	0	36.5	0	34;39	n	0.08	2	24.0	2	27;21	y	0.02	1	40.5	1	46;35	n	0.00	0	18.0	0	18;18	n	0.04	1	27.5	1	30;25	n	0.00	0	19.0	0	21;17	n	0.00	0	22.0	0	19;25	n	0.11	5	42.5	5	44;41	y	0.05	1	18.0	1	15;21	n	0.00	0	34.0	0	41;27	n	ENSMUSG00000039463.15	Slc9a8	chr2	protein_coding	solute carrier family 9 (sodium/hydrogen exchanger), member 8
known_NIR_10743	chr2	167266217	167283049	+	167276782	167283049	A5SS&ES	ENSMUST00000131956.8	known	0.00	0	21	0	21	n	0.00	0	15	0	15	n	0.00	0	39	0	39	n	0.09	2	21	2	21	y	0.03	1	35	1	35	n	0.00	0	18	0	18	n	0.04	1	25	1	25	n	0.00	0	17	0	17	n	0.00	0	25	0	25	n	0.11	5	41	5	41	y	0.05	1	21	1	21	n	0.00	0	27	0	27	n	ENSMUSG00000039463.15	Slc9a8	chr2	protein_coding	solute carrier family 9 (sodium/hydrogen exchanger), member 8
known_NIR_10744	chr2	167287527	167293127	+	167287527;167288456	167288422;167293127	ES	ENSMUST00000047815.13	known	0.00	0	27.5	0	28;27	n	0.00	0	18.0	0	19;17	n	0.00	0	40.5	0	37;44	n	0.00	0	34.5	0	35;34	n	0.02	1	39.5	1	41;38	n	0.00	0	17.5	0	20;15	n	0.08	3	32.5	3	34;31	y	0.00	0	25.0	0	27;23	n	0.08	2	24.5	2	28;21	y	0.00	0	39.5	0	43;36	n	0.00	0	27.5	0	22;33	n	0.00	0	28.5	0	28;29	n	ENSMUSG00000039463.15	Slc9a8	chr2	protein_coding	solute carrier family 9 (sodium/hydrogen exchanger), member 8
known_NIR_10745	chr2	167293005	167293127	+	167288456	167293127	A5SS	ENSMUST00000047815.13	known	0.10	3	27	3	27	y	0.15	3	17	3	17	y	0.00	0	44	0	44	n	0.06	2	34	2	34	y	0.07	3	38	3	38	y	0.12	2	15	2	15	y	0.06	2	31	2	31	y	0.04	1	23	1	23	n	0.00	0	21	0	21	n	0.00	0	36	0	36	n	0.06	2	33	2	33	y	0.00	0	29	0	29	n	ENSMUSG00000039463.15	Slc9a8	chr2	protein_coding	solute carrier family 9 (sodium/hydrogen exchanger), member 8
known_NIR_10746	chr2	167293270	167299247	+	167293270	167307261	A3SS	ENSMUST00000141400.8	known	0.91	30	3	30	3	y	0.86	19	3	19	3	y	0.91	42	4	42	4	y	0.96	49	2	49	2	y	0.91	41	4	41	4	y	0.97	28	1	28	1	n	0.89	32	4	32	4	y	1.00	20	0	20	0	n	0.78	21	6	21	6	y	0.87	47	7	47	7	y	0.90	27	3	27	3	y	0.89	42	5	42	5	y	ENSMUSG00000039463.15	Slc9a8	chr2	protein_coding	solute carrier family 9 (sodium/hydrogen exchanger), member 8
known_NIR_10747	chr2	167299385	167301581	+	167299385	167301569	A3SS	ENSMUST00000047815.13	known	0.00	0	35	0	35	n	0.00	0	30	0	30	n	0.00	0	53	0	53	n	0.01	1	67	1	67	n	0.00	0	46	0	46	n	0.00	0	25	0	25	n	0.00	0	34	0	34	n	0.00	0	31	0	31	n	0.00	0	37	0	37	n	0.04	2	52	2	52	y	0.00	0	28	0	28	n	0.00	0	46	0	46	n	ENSMUSG00000039463.15	Slc9a8	chr2	protein_coding	solute carrier family 9 (sodium/hydrogen exchanger), member 8
known_NIR_10748	chr2	167301674	167307261	+	167293270	167307261	A5SS	ENSMUST00000141400.8	known	0.93	37	3	37	3	y	0.90	27	3	27	3	y	0.94	68	4	68	4	y	0.97	58	2	58	2	y	0.91	39	4	39	4	y	0.98	40	1	40	1	n	0.90	38	4	38	4	y	1.00	34	0	34	0	n	0.83	30	6	30	6	y	0.88	51	7	51	7	y	0.94	44	3	44	3	y	0.91	48	5	48	5	y	ENSMUSG00000039463.15	Slc9a8	chr2	protein_coding	solute carrier family 9 (sodium/hydrogen exchanger), member 8
known_NIR_10749	chr2	167309687	167313302	+	167309687	167310884	3pMXE	ENSMUST00000155585.8	known	0.00	0	32	0	32	n	0.00	0	34	0	34	n	0.00	0	66	0	66	n	0.02	1	42	1	42	n	0.07	4	51	4	51	y	0.00	0	32	0	32	n	0.00	0	44	0	44	n	0.00	0	27	0	27	n	0.00	0	33	0	33	n	0.00	0	65	0	65	n	0.00	0	53	0	53	n	0.00	0	68	0	68	n	ENSMUSG00000039463.15	Slc9a8	chr2	protein_coding	solute carrier family 9 (sodium/hydrogen exchanger), member 8
known_NIR_10750	chr2	167309687	167313302	+	167309687;167310995	167310884;167313302	ES	ENSMUST00000047815.13	known	0.00	0	35.0	0	32;38	n	0.00	0	29.0	0	34;24	n	0.00	0	58.5	0	66;51	n	0.03	1	39.0	1	42;36	n	0.07	4	49.5	4	51;48	y	0.00	0	28.5	0	32;25	n	0.00	0	48.5	0	44;53	n	0.00	0	29.0	0	27;31	n	0.00	0	37.0	0	33;41	n	0.00	0	57.5	0	65;50	n	0.00	0	44.5	0	53;36	n	0.00	0	64.5	0	68;61	n	ENSMUSG00000039463.15	Slc9a8	chr2	protein_coding	solute carrier family 9 (sodium/hydrogen exchanger), member 8
known_NIR_10751	chr2	167327513;167328412	167328352;167334679	-	167327513	167334679	cassetteExon	ENSMUST00000057627.16	known	0.11	0.5	4	1;0	4	n	0.09	1.0	10	1;1	10	n	0.06	0.5	8	1;0	8	n	0.05	0.5	10	1;0	10	n	0.02	0.5	24	0;1	24	n	0.18	2.0	9	2;2	9	y	0.13	2.0	13	4;0	13	n	0.06	0.5	8	1;0	8	n	0.33	1.5	3	2;1	3	n	0.06	0.5	8	1;0	8	n	0.00	0.0	6	0;0	6	n	0.06	0.5	8	1;0	8	n	ENSMUSG00000047030.16	Spata2	chr2	protein_coding	spermatogenesis associated 2
known_NIR_10752	chr2	167327513;167331288	167331089;167334679	-	167327513	167334679	cassetteExon	ENSMUST00000057627.16	known	0.11	0.5	4	1;0	4	n	0.13	1.5	10	2;1	10	n	0.06	0.5	8	0;1	8	n	0.09	1.0	10	2;0	10	n	0.14	4.0	24	8;0	24	n	0.14	1.5	9	3;0	9	n	0.04	0.5	13	1;0	13	n	0.16	1.5	8	1;2	8	n	0.50	3.0	3	6;0	3	n	0.20	2.0	8	2;2	8	y	0.08	0.5	6	0;1	6	n	0.06	0.5	8	1;0	8	n	ENSMUSG00000047030.16	Spata2	chr2	protein_coding	spermatogenesis associated 2
known_NIR_10753	chr2	167345521	167352796	+	167345521;167349117	167348967;167352796	ES	ENSMUST00000109214.8	known	0.03	5	146.5	5	124;169	y	0.00	0	101.0	0	77;125	n	0.02	4	191.5	4	160;223	y	0.01	2	183.0	2	171;195	y	0.03	6	220.0	6	191;249	y	0.06	6	101.5	6	72;131	y	0.04	8	191.5	8	145;238	y	0.05	6	109.5	6	97;122	y	0.02	2	113.0	2	88;138	y	0.02	4	219.5	4	185;254	y	0.03	4	126.5	4	105;148	y	0.02	5	199.5	5	171;228	y	ENSMUSG00000006418.18	Rnf114	chr2	protein_coding	ring finger protein 114
known_NIR_10754	chr2	167451167	167459749	-	167451167	167452224	5pMXE	ENSMUST00000144628.2	known	0.03	9	319	9	319	y	0.00	0	282	0	282	n	0.01	4	374	4	374	y	0.01	4	352	4	352	y	0.01	4	418	4	418	y	0.00	1	238	1	238	n	0.02	8	423	8	423	y	0.00	0	241	0	241	n	0.00	1	291	1	291	n	0.01	5	413	5	413	y	0.01	3	312	3	312	y	0.02	9	377	9	377	y	ENSMUSG00000078923.11	Ube2v1	chr2	protein_coding	ubiquitin-conjugating enzyme E2 variant 1
known_NIR_10755	chr2	167451167	167459749	-	167451167;167452349	167452224;167459749	ES	ENSMUST00000109207.10	known	0.03	9	327.5	9	319;336	y	0.00	0	276.5	0	282;271	n	0.01	4	354.0	4	374;334	y	0.01	4	349.0	4	352;346	y	0.01	4	422.0	4	418;426	y	0.00	1	222.5	1	238;207	n	0.02	8	419.0	8	423;415	y	0.00	0	226.0	0	241;211	n	0.00	1	270.5	1	291;250	n	0.01	5	389.0	5	413;365	y	0.01	3	298.5	3	312;285	y	0.02	9	376.5	9	377;376	y	ENSMUSG00000078923.11	Ube2v1	chr2	protein_coding	ubiquitin-conjugating enzyme E2 variant 1
known_NIR_10756	chr2	167451167	167459749	-	167452349	167459749	3pMXE	ENSMUST00000140216.2	known	0.03	9	336	9	336	y	0.00	0	271	0	271	n	0.01	4	334	4	334	y	0.01	4	346	4	346	y	0.01	4	426	4	426	y	0.00	1	207	1	207	n	0.02	8	415	8	415	y	0.00	0	211	0	211	n	0.00	1	250	1	250	n	0.01	5	365	5	365	y	0.01	3	285	3	285	y	0.02	9	376	9	376	y	ENSMUSG00000078923.11	Ube2v1	chr2	protein_coding	ubiquitin-conjugating enzyme E2 variant 1
known_NIR_10757	chr2	167459897	167470989	-	167459897	167471090	A5SS	ENSMUST00000151365.8	known	0.15	5	29	5	29	y	0.14	3	19	3	19	y	0.21	5	19	5	19	y	0.11	4	34	4	34	y	0.10	6	56	6	56	y	0.12	3	21	3	21	y	0.08	3	33	3	33	y	0.20	5	20	5	20	y	0.20	5	20	5	20	y	0.12	4	28	4	28	y	0.15	5	28	5	28	y	0.10	3	26	3	26	y	ENSMUSG00000078923.11	Ube2v1	chr2	protein_coding	ubiquitin-conjugating enzyme E2 variant 1
known_NIR_10758	chr2	167459897	167471087	-	167459897	167471090	A5SS	ENSMUST00000151365.8	known	0.06	2	29	2	29	y	0.00	0	19	0	19	n	0.10	2	19	2	19	y	0.00	0	34	0	34	n	0.00	0	56	0	56	n	0.09	2	21	2	21	y	0.03	1	33	1	33	n	0.00	0	20	0	20	n	0.00	0	20	0	20	n	0.07	2	28	2	28	y	0.07	2	28	2	28	y	0.04	1	26	1	26	n	ENSMUSG00000078923.11	Ube2v1	chr2	protein_coding	ubiquitin-conjugating enzyme E2 variant 1
known_NIR_10759	chr2	167459897;167471208	167470989;167473860	-	167459897	167473860	cassetteExon	ENSMUST00000109207.10	known	0.26	12.0	34	5;19	34	y	0.16	7.0	37	3;11	37	y	0.26	12.0	34	5;19	34	y	0.13	8.5	56	4;13	56	y	0.25	17.5	52	6;29	52	y	0.31	9.0	20	3;15	20	y	0.24	15.5	50	3;28	50	y	0.23	7.5	25	5;10	25	y	0.13	6.5	43	5;8	43	y	0.27	13.0	36	4;22	36	y	0.17	7.0	34	5;9	34	y	0.20	12.5	50	3;22	50	y	ENSMUSG00000078923.11	Ube2v1	chr2	protein_coding	ubiquitin-conjugating enzyme E2 variant 1
known_NIR_10760	chr2	167459897;167471208	167471087;167473860	-	167459897	167473860	cassetteExon	ENSMUST00000109207.10	known	0.24	10.5	34	2;19	34	y	0.13	5.5	37	0;11	37	n	0.24	10.5	34	2;19	34	y	0.10	6.5	56	0;13	56	n	0.22	14.5	52	0;29	52	n	0.30	8.5	20	2;15	20	y	0.22	14.5	50	1;28	50	n	0.17	5.0	25	0;10	25	n	0.09	4.0	43	0;8	43	n	0.25	12.0	36	2;22	36	y	0.14	5.5	34	2;9	34	y	0.19	11.5	50	1;22	50	n	ENSMUSG00000078923.11	Ube2v1	chr2	protein_coding	ubiquitin-conjugating enzyme E2 variant 1
known_NIR_10761	chr2	167459897;167471208	167471090;167473860	-	167459897	167473860	cassetteExon	ENSMUST00000109207.10	known	0.41	24.0	34	29;19	34	y	0.29	15.0	37	19;11	37	y	0.36	19.0	34	19;19	34	y	0.30	23.5	56	34;13	56	y	0.45	42.5	52	56;29	52	y	0.47	18.0	20	21;15	20	y	0.38	30.5	50	33;28	50	y	0.38	15.0	25	20;10	25	y	0.25	14.0	43	20;8	43	y	0.41	25.0	36	28;22	36	y	0.35	18.5	34	28;9	34	y	0.32	24.0	50	26;22	50	y	ENSMUSG00000078923.11	Ube2v1	chr2	protein_coding	ubiquitin-conjugating enzyme E2 variant 1
known_NIR_10762	chr2	167774476;167793999	167793876;167805548	+	167774476	167805548	cassetteExon	ENSMUST00000029053.8	known	0.08	3.5	39	3;4	39	y	0.09	3.5	36	1;6	36	n	0.10	14.0	120	10;18	120	y	0.09	6.0	60	4;8	60	y	0.10	8.5	77	6;11	77	y	0.07	4.0	54	4;4	54	y	0.07	4.5	59	4;5	59	y	0.04	1.5	37	1;2	37	n	0.14	3.0	19	3;3	19	y	0.08	6.5	75	4;9	75	y	0.10	2.5	23	4;1	23	n	0.09	4.0	43	4;4	43	y	ENSMUSG00000027540.14	Ptpn1	chr2	protein_coding	protein tyrosine phosphatase, non-receptor type 1
known_NIR_10763	chr2	168029579	168048494	-	168029579	168031202	A5SS&ES	ENSMUST00000138667.2	known	0.06	1	17	1	17	n	0.00	0	16	0	16	n	0.00	0	33	0	33	n	0.00	0	32	0	32	n	0.03	1	35	1	35	n	0.00	0	21	0	21	n	0.00	0	16	0	16	n	0.08	2	22	2	22	y	0.00	0	12	0	12	n	0.00	0	53	0	53	n	0.00	0	32	0	32	n	0.00	0	31	0	31	n	ENSMUSG00000093752.2	Gm20716	chr2	protein_coding	predicted gene 20716
known_NIR_10764	chr2	168031314	168046520	-	168031314	168052351	A5SS	ENSMUST00000138667.2	known	0.25	1	3	1	3	n	0.80	4	1	4	1	n	0.88	14	2	14	2	y	0.55	6	5	6	5	y	0.62	5	3	5	3	n	1.00	4	0	4	0	n	0.57	4	3	4	3	n	0.77	10	3	10	3	y	0.83	5	1	5	1	n	0.73	11	4	11	4	y	0.00	0	3	0	3	n	1.00	6	0	6	0	n	ENSMUSG00000093752.2	Gm20716	chr2	protein_coding	predicted gene 20716
known_NIR_10765	chr2	168031314	168048494	-	168031314;168046694	168046520;168048494	ES	ENSMUST00000057793.11	known	0.84	8	1.5	8	1;2	n	0.00	0	2.5	0	4;1	n	0.45	7	8.5	7	14;3	y	0.57	6	4.5	6	6;3	y	0.65	11	6.0	11	5;7	y	0.57	4	3.0	4	4;2	y	0.47	4	4.5	4	4;5	y	0.00	0	6.5	0	10;3	n	0.76	8	2.5	8	5;0	n	0.70	14	6.0	14	11;1	n	0.57	2	1.5	2	0;3	n	0.55	6	5.0	6	6;4	y	ENSMUSG00000051149.16	Adnp	chr2	protein_coding	activity-dependent neuroprotective protein
known_NIR_10766	chr2	168031314	168048494	-	168046694	168048494	3pMXE	ENSMUST00000131200.2	known	0.80	8	2	8	2	y	0.00	0	1	0	1	n	0.70	7	3	7	3	y	0.67	6	3	6	3	n	0.61	11	7	11	7	y	0.67	4	2	4	2	n	0.44	4	5	4	5	n	0.00	0	3	0	3	n	1.00	8	0	8	0	n	0.93	14	1	14	1	n	0.40	2	3	2	3	n	0.60	6	4	6	4	y	ENSMUSG00000051149.16	Adnp	chr2	protein_coding	activity-dependent neuroprotective protein
known_NIR_10767	chr2	168031314	168052351	-	168031314	168048494	5pMXE	ENSMUST00000088001.6	known	0.27	3	8	3	8	y	1.00	1	0	1	0	n	0.22	2	7	2	7	n	0.45	5	6	5	6	y	0.21	3	11	3	11	y	0.00	0	4	0	4	n	0.43	3	4	3	4	n	1.00	3	0	3	0	n	0.11	1	8	1	8	n	0.22	4	14	4	14	y	0.60	3	2	3	2	n	0.00	0	6	0	6	n	ENSMUSG00000051149.16	Adnp	chr2	protein_coding	activity-dependent neuroprotective protein
known_NIR_10768	chr2	168053347	168054880	-	168053400	168054880	A3SS	ENSMUST00000138667.2	known	0.03	8	260	8	260	y	0.05	14	250	14	250	y	0.06	17	252	17	252	y	0.05	13	275	13	275	y	0.05	12	254	12	254	y	0.01	2	137	2	137	y	0.04	11	303	11	303	y	0.08	13	140	13	140	y	0.05	12	241	12	241	y	0.04	15	403	15	403	y	0.04	10	273	10	273	y	0.06	23	369	23	369	y	ENSMUSG00000093752.2	Gm20716	chr2	protein_coding	predicted gene 20716
known_NIR_10769	chr2	168059696	168061957	-	168059696;168061165	168061140;168061957	ES	ENSMUST00000138667.2	known	0.00	1	324.5	1	343;306	n	0.01	4	311.5	4	328;295	y	0.01	3	282.5	3	294;271	y	0.00	1	392.5	1	413;372	n	0.01	2	379.0	2	388;370	y	0.01	1	171.0	1	185;157	n	0.00	0	424.5	0	427;422	n	0.01	1	182.0	1	196;168	n	0.00	0	380.5	0	400;361	n	0.00	1	462.5	1	466;459	n	0.01	2	370.5	2	384;357	y	0.00	0	437.0	0	461;413	n	ENSMUSG00000093752.2	Gm20716	chr2	protein_coding	predicted gene 20716
known_NIR_10770	chr2	168069422	168072309	-	168069422	168072113	5pMXE	ENSMUST00000138667.2	known	0.00	1	222	1	222	n	0.00	0	176	0	176	n	0.02	4	182	4	182	y	0.01	2	261	2	261	y	0.01	3	209	3	209	y	0.00	0	123	0	123	n	0.01	3	260	3	260	y	0.00	0	134	0	134	n	0.00	1	216	1	216	n	0.02	5	276	5	276	y	0.00	1	265	1	265	n	0.01	2	288	2	288	y	ENSMUSG00000093752.2	Gm20716	chr2	protein_coding	predicted gene 20716
known_NIR_10771	chr2	168552896	168583602	-	168552896	168575941	5pMXE	ENSMUST00000109175.9	known	0.64	16	9	16	9	y	0.77	10	3	10	3	y	0.35	24	45	24	45	y	0.83	19	4	19	4	y	0.64	32	18	32	18	y	0.39	22	34	22	34	y	0.57	27	20	27	20	y	0.51	27	26	27	26	y	0.31	5	11	5	11	y	0.67	20	10	20	10	y	0.65	13	7	13	7	y	0.81	13	3	13	3	y	ENSMUSG00000027546.16	Atp9a	chr2	protein_coding	ATPase, class II, type 9A
known_NIR_10772	chr2	168552896	168584008	-	168552896	168575941	5pMXE	ENSMUST00000109175.9	known	0.10	1	9	1	9	n	0.57	4	3	4	3	n	0.10	5	45	5	45	y	0.75	12	4	12	4	y	0.50	18	18	18	18	y	0.19	8	34	8	34	y	0.41	14	20	14	20	y	0.19	6	26	6	26	y	0.15	2	11	2	11	y	0.38	6	10	6	10	y	0.30	3	7	3	7	y	0.77	10	3	10	3	y	ENSMUSG00000027546.16	Atp9a	chr2	protein_coding	ATPase, class II, type 9A
known_NIR_10773	chr2	168552896	168584008	-	168552896	168583602	5pMXE	ENSMUST00000029060.11	known	0.06	1	16	1	16	n	0.29	4	10	4	10	y	0.17	5	24	5	24	y	0.39	12	19	12	19	y	0.36	18	32	18	32	y	0.27	8	22	8	22	y	0.34	14	27	14	27	y	0.18	6	27	6	27	y	0.29	2	5	2	5	n	0.23	6	20	6	20	y	0.19	3	13	3	13	y	0.43	10	13	10	13	y	ENSMUSG00000027546.16	Atp9a	chr2	protein_coding	ATPase, class II, type 9A
known_NIR_10774	chr2	168552896	168584075	-	168552896	168583602	5pMXE	ENSMUST00000029060.11	known	0.00	0	16	0	16	n	0.00	0	10	0	10	n	0.04	1	24	1	24	n	0.10	2	19	2	19	y	0.00	0	32	0	32	n	0.00	0	22	0	22	n	0.04	1	27	1	27	n	0.00	0	27	0	27	n	0.00	0	5	0	5	n	0.00	0	20	0	20	n	0.00	0	13	0	13	n	0.00	0	13	0	13	n	ENSMUSG00000027546.16	Atp9a	chr2	protein_coding	ATPase, class II, type 9A
known_NIR_10775	chr2	168552896	168584075	-	168552896	168584008	5pMXE	ENSMUST00000109177.8	known	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.14	2	12	2	12	y	0.00	0	18	0	18	n	0.00	0	8	0	8	n	0.07	1	14	1	14	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	ENSMUSG00000027546.16	Atp9a	chr2	protein_coding	ATPase, class II, type 9A
known_NIR_10776	chr2	168768853	168777131	-	168748909	168777131	A3SS	ENSMUST00000109162.9	known	0.92	11	1	11	1	n	0.83	5	1	5	1	n	0.93	14	1	14	1	n	1.00	12	0	12	0	n	0.94	15	1	15	1	n	0.90	9	1	9	1	n	1.00	10	0	10	0	n	1.00	9	0	9	0	n	1.00	8	0	8	0	n	0.90	18	2	18	2	y	1.00	9	0	9	0	n	0.91	20	2	20	2	y	ENSMUSG00000027551.16	Zfp64	chr2	protein_coding	zinc finger protein 64
known_NIR_10777	chr2	168776859	168777131	-	168748909	168777131	A3SS	ENSMUST00000109162.9	known	0.75	3	1	3	1	n	0.92	11	1	11	1	n	0.90	9	1	9	1	n	1.00	6	0	6	0	n	0.88	7	1	7	1	n	0.80	4	1	4	1	n	1.00	11	0	11	0	n	1.00	2	0	2	0	n	1.00	4	0	4	0	n	0.82	9	2	9	2	y	1.00	6	0	6	0	n	0.82	9	2	9	2	y	ENSMUSG00000027551.16	Zfp64	chr2	protein_coding	zinc finger protein 64
known_NIR_10778	chr2	168776859	168777131	-	168768853	168777131	A3SS	ENSMUST00000087971.11	known	0.21	3	11	3	11	y	0.69	11	5	11	5	y	0.39	9	14	9	14	y	0.33	6	12	6	12	y	0.32	7	15	7	15	y	0.31	4	9	4	9	y	0.52	11	10	11	10	y	0.18	2	9	2	9	y	0.33	4	8	4	8	y	0.33	9	18	9	18	y	0.40	6	9	6	9	y	0.31	9	20	9	20	y	ENSMUSG00000027551.16	Zfp64	chr2	protein_coding	zinc finger protein 64
known_NIR_10779	chr2	172212947	172214849	+	172212776	172214849	A5SS	ENSMUST00000151511.8	known	0.62	13	8	13	8	y	0.61	14	9	14	9	y	0.55	12	10	12	10	y	0.38	9	15	9	15	y	0.64	27	15	27	15	y	0.56	14	11	14	11	y	0.62	21	13	21	13	y	0.83	15	3	15	3	y	0.85	17	3	17	3	y	0.70	14	6	14	6	y	0.42	8	11	8	11	y	0.48	11	12	11	12	y	ENSMUSG00000027498.15	Cstf1	chr2	protein_coding	cleavage stimulation factor, 3' pre-RNA, subunit 1
known_NIR_10780	chr2	172295237	172305097	+	172289033	172305097	A5SS	ENSMUST00000029005.4	known	0.00	0	198	0	198	n	0.02	4	193	4	193	y	0.00	0	195	0	195	n	0.01	2	168	2	168	y	0.02	7	281	7	281	y	0.02	2	122	2	122	y	0.01	5	341	5	341	y	0.03	4	141	4	141	y	0.00	0	145	0	145	n	0.02	5	284	5	284	y	0.01	3	242	3	242	y	0.00	1	218	1	218	n	ENSMUSG00000027502.12	Rtf2	chr2	protein_coding	replication termination factor 2
known_NIR_10781	chr2	172842043	172844452	+	172842169	172844452	A5SS	ENSMUST00000029013.10	known	0.11	3	25	3	25	y	0.00	0	29	0	29	n	0.04	2	46	2	46	y	0.00	0	21	0	21	n	0.09	4	43	4	43	y	0.05	2	35	2	35	y	0.00	0	27	0	27	n	0.00	0	24	0	24	n	0.12	4	30	4	30	y	0.07	3	37	3	37	y	0.00	0	30	0	30	n	0.07	3	41	3	41	y	ENSMUSG00000027509.12	Rae1	chr2	protein_coding	ribonucleic acid export 1
known_NIR_10782	chr2	172864040	172864585	+	172864063	172864585	A5SS	ENSMUST00000173393.8	known	0.22	2	7	2	7	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.08	1	12	1	12	n	0.00	0	6	0	6	n	0.00	0	18	0	18	n	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.18	2	9	2	9	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000027510.18	Rbm38	chr2	protein_coding	RNA binding motif protein 38
known_NIR_10783	chr2	172952798	172955172	+	172952798	172971020	A3SS	ENSMUST00000142207.8	known	0.22	5	18	5	18	y	0.09	2	20	2	20	y	0.06	6	97	6	97	y	0.10	6	53	6	53	y	0.14	5	32	5	32	y	0.11	8	67	8	67	y	0.14	10	59	10	59	y	0.11	7	56	7	56	y	0.06	2	31	2	31	y	0.04	2	55	2	55	y	0.07	2	26	2	26	y	0.12	3	23	3	23	y	ENSMUSG00000087382.8	Ctcflos	chr2	lncRNA	CCCTC-binding factor (zinc finger protein)-like, opposite strand
known_NIR_10784	chr2	172965875	172971020	+	172952798	172971020	A5SS	ENSMUST00000142207.8	known	0.14	3	18	3	18	y	0.20	5	20	5	20	y	0.04	4	97	4	97	y	0.09	5	53	5	53	y	0.16	6	32	6	32	y	0.08	6	67	6	67	y	0.05	3	59	3	59	y	0.00	0	56	0	56	n	0.00	0	31	0	31	n	0.00	0	55	0	55	n	0.07	2	26	2	26	y	0.12	3	23	3	23	y	ENSMUSG00000087382.8	Ctcflos	chr2	lncRNA	CCCTC-binding factor (zinc finger protein)-like, opposite strand
known_NIR_10785	chr2	172966708	172971020	+	172952798	172971020	A5SS	ENSMUST00000142207.8	known	0.10	2	18	2	18	y	0.00	0	20	0	20	n	0.05	5	97	5	97	y	0.07	4	53	4	53	y	0.03	1	32	1	32	n	0.03	2	67	2	67	y	0.03	2	59	2	59	y	0.03	2	56	2	56	y	0.11	4	31	4	31	y	0.07	4	55	4	55	y	0.07	2	26	2	26	y	0.04	1	23	1	23	n	ENSMUSG00000087382.8	Ctcflos	chr2	lncRNA	CCCTC-binding factor (zinc finger protein)-like, opposite strand
known_NIR_10786	chr2	172995405	172995649	+	172995405	172995728	A3SS	ENSMUST00000029017.6	known	0.01	68	5811	68	5811	y	0.02	90	4992	90	4992	y	0.01	50	4492	50	4492	y	0.01	81	7954	81	7954	y	0.01	41	5317	41	5317	y	0.01	18	2149	18	2149	y	0.01	45	6121	45	6121	y	0.01	31	2997	31	2997	y	0.01	39	3520	39	3520	y	0.02	106	5739	106	5739	y	0.01	23	4349	23	4349	y	0.02	132	6377	132	6377	y	ENSMUSG00000027513.12	Pck1	chr2	protein_coding	phosphoenolpyruvate carboxykinase 1, cytosolic
known_NIR_10787	chr2	173055702	173057470	-	173054059	173057470	A3SS	ENSMUST00000029018.14	known	0.67	69	34	69	34	y	0.74	112	39	112	39	y	0.64	143	81	143	81	y	0.62	56	34	56	34	y	0.72	104	40	104	40	y	0.75	56	19	56	19	y	0.63	72	43	72	43	y	0.72	31	12	31	12	y	0.57	46	35	46	35	y	0.59	63	43	63	43	y	0.69	93	41	93	41	y	0.69	44	20	44	20	y	ENSMUSG00000027514.15	Zbp1	chr2	protein_coding	Z-DNA binding protein 1
known_NIR_10788	chr2	173431081	173431298	-	173431043	173431298	A3SS	ENSMUST00000141051.8	known	0.07	1	14	1	14	n	0.09	1	10	1	10	n	0.00	0	16	0	16	n	0.00	0	14	0	14	n	0.00	0	23	0	23	n	0.00	0	4	0	4	n	0.09	2	21	2	21	y	0.11	1	8	1	8	n	0.00	0	14	0	14	n	0.03	1	29	1	29	n	0.00	0	13	0	13	n	0.00	0	24	0	24	n	ENSMUSG00000055897.14	Ppp4r1l-ps	chr2	transcribed_unprocessed_pseudogene	protein phosphatase 4, regulatory subunit 1-like, pseudogene
known_NIR_10789	chr2	173434126	173434595	-	173434014	173434595	A3SS	ENSMUST00000141051.8	known	0.54	7	6	7	6	y	-	-	-	-	-	-	0.50	2	2	2	2	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.40	2	3	2	3	n	0.50	2	2	2	2	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.50	2	2	2	2	n	0.22	2	7	2	7	n	ENSMUSG00000055897.14	Ppp4r1l-ps	chr2	transcribed_unprocessed_pseudogene	protein phosphatase 4, regulatory subunit 1-like, pseudogene
known_NIR_10790	chr2	173438192	173438833	-	173434807	173438833	A3SS	ENSMUST00000141051.8	known	0.90	9	1	9	1	n	0.83	5	1	5	1	n	1.00	6	0	6	0	n	0.75	3	1	3	1	n	0.64	7	4	7	4	y	1.00	5	0	5	0	n	0.67	4	2	4	2	n	1.00	2	0	2	0	n	0.57	4	3	4	3	n	0.71	5	2	5	2	n	1.00	3	0	3	0	n	0.40	2	3	2	3	n	ENSMUSG00000055897.14	Ppp4r1l-ps	chr2	transcribed_unprocessed_pseudogene	protein phosphatase 4, regulatory subunit 1-like, pseudogene
known_NIR_10791	chr2	173438192	173438833	-	173438320	173438833	A3SS	ENSMUST00000132669.8	known	0.75	9	3	9	3	y	0.45	5	6	5	6	y	0.50	6	6	6	6	y	0.38	3	5	3	5	n	0.58	7	5	7	5	y	0.71	5	2	5	2	n	0.25	4	12	4	12	y	0.50	2	2	2	2	n	0.36	4	7	4	7	y	0.26	5	14	5	14	y	0.23	3	10	3	10	y	0.33	2	4	2	4	n	ENSMUSG00000055897.14	Ppp4r1l-ps	chr2	transcribed_unprocessed_pseudogene	protein phosphatase 4, regulatory subunit 1-like, pseudogene
known_NIR_10792	chr2	173438320	173438833	-	173434807	173438833	A3SS	ENSMUST00000141051.8	known	0.75	3	1	3	1	n	0.86	6	1	6	1	n	1.00	6	0	6	0	n	0.83	5	1	5	1	n	0.56	5	4	5	4	n	1.00	2	0	2	0	n	0.86	12	2	12	2	y	1.00	2	0	2	0	n	0.70	7	3	7	3	y	0.88	14	2	14	2	y	1.00	10	0	10	0	n	0.57	4	3	4	3	n	ENSMUSG00000055897.14	Ppp4r1l-ps	chr2	transcribed_unprocessed_pseudogene	protein phosphatase 4, regulatory subunit 1-like, pseudogene
known_NIR_10793	chr2	173438980	173450526	-	173438980;173441480	173441383;173450526	ES	ENSMUST00000141051.8	known	0.00	0	13.0	0	18;8	n	0.08	1	11.0	1	9;13	n	0.55	9	7.5	9	9;6	y	0.09	1	10.5	1	11;10	n	0.22	4	14.0	4	13;15	y	0.40	7	10.5	7	12;9	y	0.12	2	14.5	2	16;13	y	0.29	3	7.5	3	6;9	y	0.27	2	5.5	2	4;7	y	0.22	4	14.5	4	17;12	y	0.00	0	7.5	0	7;8	n	0.38	10	16.5	10	21;12	y	ENSMUSG00000055897.14	Ppp4r1l-ps	chr2	transcribed_unprocessed_pseudogene	protein phosphatase 4, regulatory subunit 1-like, pseudogene
known_NIR_10794	chr2	173450672	173501116	-	173450672;173457369	173457276;173501116	ES	ENSMUST00000151763.8	known	0.56	7	5.5	7	6;5	y	0.08	1	12.0	1	13;11	n	0.28	4	10.5	4	13;8	y	0.14	1	6.0	1	5;7	n	0.31	8	17.5	8	24;11	y	0.00	0	7.0	0	6;8	n	0.21	3	11.5	3	14;9	y	0.26	4	11.5	4	15;8	y	0.22	4	14.0	4	18;10	y	0.30	7	16.0	7	19;13	y	0.12	1	7.0	1	8;6	n	0.32	5	10.5	5	15;6	y	ENSMUSG00000055897.14	Ppp4r1l-ps	chr2	transcribed_unprocessed_pseudogene	protein phosphatase 4, regulatory subunit 1-like, pseudogene
known_NIR_10795	chr2	173450672	173501116	-	173450672;173458216	173457276;173501116	ES	ENSMUST00000141051.8	known	0.70	7	3.0	7	6;0	n	0.13	1	6.5	1	13;0	n	0.36	4	7.0	4	13;1	n	0.29	1	2.5	1	5;0	n	0.38	8	13.0	8	24;2	y	0.00	0	3.0	0	6;0	n	0.29	3	7.5	3	14;1	n	0.32	4	8.5	4	15;2	y	0.31	4	9.0	4	18;0	n	0.42	7	9.5	7	19;0	n	0.20	1	4.0	1	8;0	n	0.40	5	7.5	5	15;0	n	ENSMUSG00000055897.14	Ppp4r1l-ps	chr2	transcribed_unprocessed_pseudogene	protein phosphatase 4, regulatory subunit 1-like, pseudogene
known_NIR_10796	chr2	173450672	173501116	-	173457369	173501116	3pMXE	ENSMUST00000133185.2	known	0.58	7	5	7	5	y	0.08	1	11	1	11	n	0.33	4	8	4	8	y	0.12	1	7	1	7	n	0.42	8	11	8	11	y	0.00	0	8	0	8	n	0.25	3	9	3	9	y	0.33	4	8	4	8	y	0.29	4	10	4	10	y	0.35	7	13	7	13	y	0.14	1	6	1	6	n	0.45	5	6	5	6	y	ENSMUSG00000055897.14	Ppp4r1l-ps	chr2	transcribed_unprocessed_pseudogene	protein phosphatase 4, regulatory subunit 1-like, pseudogene
known_NIR_10797	chr2	173457369	173501116	-	173458216	173501116	A3SS	ENSMUST00000141051.8	known	1.00	5	0	5	0	n	1.00	11	0	11	0	n	0.89	8	1	8	1	n	1.00	7	0	7	0	n	0.85	11	2	11	2	y	1.00	8	0	8	0	n	0.90	9	1	9	1	n	0.80	8	2	8	2	y	1.00	10	0	10	0	n	1.00	13	0	13	0	n	1.00	6	0	6	0	n	1.00	6	0	6	0	n	ENSMUSG00000055897.14	Ppp4r1l-ps	chr2	transcribed_unprocessed_pseudogene	protein phosphatase 4, regulatory subunit 1-like, pseudogene
known_NIR_10798	chr2	173458216	173501116	-	173450672	173501116	A3SS	ENSMUST00000148213.2	known	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.20	2	8	2	8	y	-	-	-	-	-	-	0.25	1	3	1	3	n	0.33	2	4	2	4	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	ENSMUSG00000055897.14	Ppp4r1l-ps	chr2	transcribed_unprocessed_pseudogene	protein phosphatase 4, regulatory subunit 1-like, pseudogene
known_NIR_10799	chr2	173487351	173501116	-	173457369	173501116	A3SS	ENSMUST00000133185.2	known	0.17	1	5	1	5	n	0.15	2	11	2	11	y	0.00	0	8	0	8	n	0.22	2	7	2	7	n	0.00	0	11	0	11	n	0.11	1	8	1	8	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	ENSMUSG00000055897.14	Ppp4r1l-ps	chr2	transcribed_unprocessed_pseudogene	protein phosphatase 4, regulatory subunit 1-like, pseudogene
known_NIR_10800	chr2	173503304	173536903	+	173503304	173529940	A3SS&ES	ENSMUST00000109110.4	known	0.05	2	42	2	42	y	0.02	1	53	1	53	n	0.09	8	86	8	86	y	0.06	3	44	3	44	y	0.09	7	67	7	67	y	0.12	3	22	3	22	y	0.01	1	79	1	79	n	0.03	1	35	1	35	n	0.02	1	50	1	50	n	0.06	5	85	5	85	y	0.04	2	51	2	51	y	0.05	4	76	4	76	y	ENSMUSG00000027519.11	Rab22a	chr2	protein_coding	RAB22A, member RAS oncogene family
known_NIR_10801	chr2	173503304;173530021	173529940;173536903	+	173503304	173536903	cassetteExon	ENSMUST00000142820.8	known	0.96	48.5	2	42;55	2	y	0.98	58.0	1	53;63	1	n	0.90	75.0	8	86;64	8	y	0.95	57.5	3	44;71	3	y	0.90	66.5	7	67;66	7	y	0.91	31.0	3	22;40	3	y	0.99	69.5	1	79;60	1	n	0.98	43.5	1	35;52	1	n	0.98	47.5	1	50;45	1	n	0.94	82.0	5	85;79	5	y	0.97	56.5	2	51;62	2	y	0.95	71.0	4	76;66	4	y	ENSMUSG00000027519.11	Rab22a	chr2	protein_coding	RAB22A, member RAS oncogene family
known_NIR_10802	chr2	173530021	173537001	+	173530021	173536903	A3SS&ES	ENSMUST00000029024.10	known	0.00	0	55	0	55	n	0.00	0	63	0	63	n	0.02	1	64	1	64	n	0.00	0	71	0	71	n	0.03	2	66	2	66	y	0.00	0	40	0	40	n	0.00	0	60	0	60	n	0.00	0	52	0	52	n	0.00	0	45	0	45	n	0.00	0	79	0	79	n	0.00	0	62	0	62	n	0.00	0	66	0	66	n	ENSMUSG00000027519.11	Rab22a	chr2	protein_coding	RAB22A, member RAS oncogene family
known_NIR_10803	chr2	173918982;173926450	173926439;173932414	+	173918982	173932414	cassetteExon	ENSMUST00000134876.8	known	0.85	22.5	4	20;25	4	y	0.87	19.5	3	18;21	3	y	0.66	11.5	6	9;14	6	y	0.71	12.0	5	11;13	5	y	0.91	29.5	3	23;36	3	y	0.76	6.5	2	5;8	2	y	0.79	22.5	6	18;27	6	y	0.76	13.0	4	11;15	4	y	0.76	22.5	7	19;26	7	y	0.88	29.5	4	27;32	4	y	0.96	22.5	1	18;27	1	n	0.84	16.0	3	11;21	3	y	ENSMUSG00000027522.16	Stx16	chr2	protein_coding	syntaxin 16
known_NIR_10804	chr2	173935318	173936853	+	173935318;173935865	173935722;173936853	ES	ENSMUST00000087908.10	known	0.00	0	58.0	0	61;55	n	0.00	0	44.0	0	49;39	n	0.02	1	52.5	1	63;42	n	0.00	0	61.5	0	93;30	n	0.00	0	86.5	0	104;69	n	0.00	0	38.0	0	49;27	n	0.02	1	55.5	1	66;45	n	0.00	0	56.0	0	75;37	n	0.00	0	41.5	0	44;39	n	0.00	0	64.0	0	73;55	n	0.00	0	42.5	0	47;38	n	0.03	2	58.0	2	62;54	y	ENSMUSG00000027522.16	Stx16	chr2	protein_coding	syntaxin 16
known_NIR_10805	chr2	173957986;173961452	173961298;173962020	+	173957986;173961263	173961186;173962020	MXE	ENSMUST00000044415.16	known	0.01	1.0	108.5	2;0	107;110	n	0.01	1.5	130.0	2;1	122;138	n	0.02	2.0	114.5	1;3	115;114	n	0.01	1.5	126.0	0;3	126;126	n	0.00	0.5	155.5	1;0	151;160	n	0.02	1.5	68.5	0;3	62;75	n	0.01	1.0	147.0	2;0	139;155	n	0.04	2.5	67.5	1;4	64;71	n	0.01	1.0	95.0	0;2	93;97	n	0.02	4.0	189.0	2;6	169;209	y	0.02	2.0	118.0	0;4	102;134	n	0.01	2.0	146.5	1;3	138;155	n	ENSMUSG00000039263.17	Npepl1	chr2	protein_coding	aminopeptidase-like 1
known_NIR_10806	chr2	174172193	174176005	+	174169734	174176005	A5SS	ENSMUST00000124935.8	known	0.92	12	1	12	1	n	-	-	-	-	-	-	0.95	19	1	19	1	n	1.00	20	0	20	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.90	19	2	19	2	y	1.00	11	0	11	0	n	-	-	-	-	-	-	1.00	19	0	19	0	n	1.00	21	0	21	0	n	-	-	-	-	-	-	ENSMUSG00000027523.21	Gnas	chr2	protein_coding	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
known_NIR_10807	chr2	174172193	174176005	+	174172227	174176005	A5SS	ENSMUST00000087871.11	known	0.01	12	1033	12	1033	y	0.00	0	951	0	951	n	0.01	19	1367	19	1367	y	0.02	20	1151	20	1151	y	0.00	0	1418	0	1418	n	0.00	0	802	0	802	n	0.01	19	1337	19	1337	y	0.01	11	860	11	860	y	0.00	0	984	0	984	n	0.01	19	1428	19	1428	y	0.02	21	1034	21	1034	y	0.00	0	1088	0	1088	n	ENSMUSG00000027523.21	Gnas	chr2	protein_coding	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
known_NIR_10808	chr2	174172227	174176005	+	174169734	174176005	A5SS	ENSMUST00000124935.8	known	1.00	1033	1	1033	1	n	1.00	951	0	951	0	n	1.00	1367	1	1367	1	n	1.00	1151	0	1151	0	n	1.00	1418	0	1418	0	n	1.00	802	0	802	0	n	1.00	1337	2	1337	2	y	1.00	860	0	860	0	n	1.00	984	0	984	0	n	1.00	1428	0	1428	0	n	1.00	1034	0	1034	0	n	1.00	1088	0	1088	0	n	ENSMUSG00000027523.21	Gnas	chr2	protein_coding	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
known_NIR_10809	chr2	174176077	174183443	+	174176077	174178540	A3SS&ES	ENSMUST00000109096.9	known	0.31	258	574	258	574	y	0.34	248	478	248	478	y	0.26	298	837	298	837	y	0.30	254	579	254	579	y	0.27	300	795	300	795	y	0.26	181	512	181	512	y	0.35	400	734	400	734	y	0.27	194	529	194	529	y	0.33	235	484	235	484	y	0.32	338	725	338	725	y	0.35	291	545	291	545	y	0.34	316	623	316	623	y	ENSMUSG00000027523.21	Gnas	chr2	protein_coding	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
known_NIR_10810	chr2	174176077	174183446	+	174176077	174183443	A3SS	ENSMUST00000087876.11	known	0.35	137	258	137	258	y	0.36	141	248	141	248	y	0.35	161	298	161	298	y	0.37	151	254	151	254	y	0.34	158	300	158	300	y	0.31	83	181	83	181	y	0.34	210	400	210	400	y	0.32	93	194	93	194	y	0.35	126	235	126	235	y	0.37	200	338	200	338	y	0.34	152	291	152	291	y	0.31	145	316	145	316	y	ENSMUSG00000027523.21	Gnas	chr2	protein_coding	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
known_NIR_10811	chr2	174176077	174183446	+	174176077;174178584	174178540;174183446	ES	ENSMUST00000109096.9	known	0.21	137	518.0	137	574;462	y	0.24	141	446.0	141	478;414	y	0.17	161	778.5	161	837;720	y	0.22	151	522.5	151	579;466	y	0.18	158	737.5	158	795;680	y	0.15	83	476.5	83	512;441	y	0.23	210	686.5	210	734;639	y	0.16	93	487.5	93	529;446	y	0.22	126	459.0	126	484;434	y	0.22	200	695.5	200	725;666	y	0.23	152	513.5	152	545;482	y	0.20	145	582.0	145	623;541	y	ENSMUSG00000027523.21	Gnas	chr2	protein_coding	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
known_NIR_10812	chr2	174178584	174183446	+	174178584	174179414	3pMXE	ENSMUST00000180362.8	known	1.00	462	0	462	0	n	1.00	414	0	414	0	n	0.99	720	4	720	4	y	1.00	466	0	466	0	n	1.00	680	0	680	0	n	1.00	441	0	441	0	n	1.00	639	0	639	0	n	1.00	446	0	446	0	n	1.00	434	2	434	2	y	1.00	666	0	666	0	n	1.00	482	0	482	0	n	0.99	541	3	541	3	y	ENSMUSG00000027523.21	Gnas	chr2	protein_coding	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
known_NIR_10813	chr2	174257827	174261820	+	174257749	174261820	A5SS	ENSMUST00000109075.8	known	0.00	0	47	0	47	n	0.03	1	33	1	33	n	0.00	0	66	0	66	n	0.03	2	74	2	74	y	0.02	2	86	2	86	y	0.03	1	37	1	37	n	0.00	0	58	0	58	n	0.00	0	26	0	26	n	0.00	0	43	0	43	n	0.00	0	79	0	79	n	0.07	3	41	3	41	y	0.02	1	57	1	57	n	ENSMUSG00000016253.13	Nelfcd	chr2	protein_coding	negative elongation factor complex member C/D, Th1l
known_NIR_10814	chr2	174264467	174264797	+	174264467	174264845	A3SS	ENSMUST00000109075.8	known	0.00	0	65	0	65	n	0.00	0	61	0	61	n	0.00	0	69	0	69	n	0.00	0	74	0	74	n	0.00	0	75	0	75	n	0.00	0	38	0	38	n	0.01	1	78	1	78	n	0.07	2	27	2	27	y	0.00	0	66	0	66	n	0.00	0	99	0	99	n	0.00	0	56	0	56	n	0.00	0	82	0	82	n	ENSMUSG00000016253.13	Nelfcd	chr2	protein_coding	negative elongation factor complex member C/D, Th1l
known_NIR_10815	chr2	174304422	174305595	-	174304422	174305758	A5SS	ENSMUST00000016396.8	known	0.00	0	1960	0	1960	n	0.00	1	2152	1	2152	n	0.00	0	1777	0	1777	n	0.00	0	1896	0	1896	n	0.00	0	2474	0	2474	n	0.00	0	1279	0	1279	n	0.00	0	2774	0	2774	n	0.00	0	1263	0	1263	n	0.00	0	1756	0	1756	n	0.00	1	2799	1	2799	n	0.00	0	2509	0	2509	n	0.00	2	2351	2	2351	y	ENSMUSG00000016252.8	Atp5e	chr2	protein_coding	ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit
known_NIR_10816	chr2	174311298;174312771	174312642;174314625	-	174311298	174314625	cassetteExon	ENSMUST00000016401.15	known	0.01	0.5	90	0;1	90	n	0.03	2.0	61	3;1	61	n	0.01	1.5	149	1;2	149	n	0.04	4.0	90	4;4	90	y	0.01	1.0	137	2;0	137	n	0.03	2.0	78	3;1	78	n	0.02	2.0	101	4;0	101	n	0.02	1.5	77	3;0	77	n	0.03	2.5	72	2;3	72	y	0.02	2.5	112	2;3	112	y	0.02	2.0	93	1;3	93	n	0.01	1.0	117	0;2	117	n	ENSMUSG00000016257.16	Prelid3b	chr2	protein_coding	PRELI domain containing 3B
known_NIR_10817	chr2	175039726;175043547	175043446;175044852	-	175039726	175044852	cassetteExon	ENSMUST00000099028.10	known	0.43	4.5	6	0;9	6	n	0.67	4.0	2	1;7	2	n	0.60	3.0	2	0;6	2	n	0.68	8.5	4	1;16	4	n	0.33	4.0	8	2;6	8	y	0.25	1.0	3	0;2	3	n	0.52	6.5	6	3;10	6	y	0.43	3.0	4	1;5	4	n	0.33	3.0	6	0;6	6	n	0.67	6.0	3	4;8	3	y	0.52	6.5	6	1;12	6	n	0.60	4.5	3	3;6	3	y	ENSMUSG00000078903.11	Gm14391	chr2	protein_coding	predicted gene 14391
known_NIR_10818	chr2	175664896;175666302	175666201;175670022	+	175664896	175670022	cassetteExon	ENSMUST00000109011.8	known	0.16	1.5	8	2;1	8	n	0.25	1.0	3	2;0	3	n	0.25	1.0	3	2;0	3	n	0.14	1.0	6	0;2	6	n	0.14	1.5	9	1;2	9	n	0.00	0.0	1	0;0	1	n	0.24	2.5	8	3;2	8	y	1.00	1.5	0	3;0	0	n	0.43	3.0	4	6;0	4	n	0.20	1.5	6	2;1	6	n	0.53	4.5	4	7;2	4	y	0.45	2.5	3	4;1	3	n	ENSMUSG00000078887.11	Gm6710	chr2	protein_coding	predicted gene 6710
known_NIR_10819	chr2	176212908	176221115	+	176212908;176220908	176220782;176221115	ES	ENSMUST00000238585.2	known	0.00	0	11.0	0	18;4	n	0.00	0	7.0	0	13;1	n	0.00	0	22.0	0	33;11	n	0.00	0	15.0	0	27;3	n	0.00	0	13.5	0	23;4	n	0.00	0	13.5	0	23;4	n	0.00	0	12.5	0	19;6	n	0.00	0	8.0	0	14;2	n	0.00	0	10.5	0	18;3	n	0.00	0	7.5	0	13;2	n	0.00	0	8.0	0	13;3	n	0.12	2	15.0	2	23;7	y	ENSMUSG00000095199.9	Zfp967	chr2	protein_coding	zinc finger protein 967
known_NIR_10820	chr2	176221175	176225048	+	176221175	176225042	A3SS	ENSMUST00000238250.2	known	-	-	-	-	-	-	1.00	1	0	1	0	n	0.40	4	6	4	6	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	n	ENSMUSG00000095199.9	Zfp967	chr2	protein_coding	zinc finger protein 967
known_NIR_10821	chr2	176400217	176403674	+	176400189	176403674	A5SS	ENSMUST00000141122.2	known	0.82	9	2	9	2	y	1.00	9	0	9	0	n	0.82	9	2	9	2	y	0.80	16	4	16	4	y	0.67	12	6	12	6	y	0.69	9	4	9	4	y	0.75	15	5	15	5	y	0.80	8	2	8	2	y	0.71	12	5	12	5	y	0.67	8	4	8	4	y	0.50	4	4	4	4	n	0.75	9	3	9	3	y	ENSMUSG00000078879.11	Zfp973	chr2	protein_coding	zinc finger protein 973
known_NIR_10822	chr2	176610852;176614690	176614589;176615992	-	176610852	176615992	cassetteExon	ENSMUST00000134982.8	known	0.24	2.5	8	1;4	8	n	0.09	0.5	5	0;1	5	n	0.00	0.0	9	0;0	9	n	0.22	2.5	9	1;4	9	n	0.33	3.0	6	3;3	6	y	0.11	0.5	4	1;0	4	n	0.29	2.0	5	2;2	5	n	0.18	1.5	7	2;1	7	n	0.00	0.0	13	0;0	13	n	0.24	2.5	8	2;3	8	y	0.31	4.5	10	2;7	10	y	0.20	2.0	8	1;3	8	n	ENSMUSG00000074527.12	Gm14296	chr2	protein_coding	predicted gene 14296
known_NIR_10823	chr2	177085188	177086490	-	177081346	177086490	A3SS	ENSMUST00000128657.8	known	0.80	4	1	4	1	n	0.75	3	1	3	1	n	0.67	4	2	4	2	n	0.75	6	2	6	2	n	1.00	9	0	9	0	n	1.00	4	0	4	0	n	1.00	8	0	8	0	n	0.33	1	2	1	2	n	0.62	5	3	5	3	n	0.71	5	2	5	2	n	0.80	8	2	8	2	y	0.83	5	1	5	1	n	ENSMUSG00000078867.10	Gm14418	chr2	protein_coding	predicted gene 14418
known_NIR_10824	chr2	177165471	177166619	+	177165471	177169433	A3SS	ENSMUST00000099002.10	known	0.78	50	14	50	14	y	0.82	28	6	28	6	y	0.78	65	18	65	18	y	0.81	44	10	44	10	y	0.72	28	11	28	11	y	0.68	15	7	15	7	y	0.72	23	9	23	9	y	0.80	24	6	24	6	y	0.76	16	5	16	5	y	0.64	25	14	25	14	y	0.42	8	11	8	11	y	0.75	40	13	40	13	y	ENSMUSG00000078866.11	Zfp970	chr2	protein_coding	zinc finger protein 970
known_NIR_10825	chr2	177190110	177198702	+	177190110;177193590	177193536;177198702	ES	ENSMUST00000142549.2	known	0.05	3	53.5	3	53;54	y	0.05	3	52.0	3	45;59	y	0.03	1	32.0	1	34;30	n	0.03	2	56.0	2	61;51	y	0.05	2	40.0	2	47;33	y	0.00	0	21.0	0	23;19	n	0.07	4	52.0	4	59;45	y	0.00	0	35.0	0	40;30	n	0.05	2	36.5	2	38;35	y	0.05	3	57.5	3	58;57	y	0.06	5	81.0	5	90;72	y	0.06	3	50.5	3	55;46	y	ENSMUSG00000094786.2	Gm14403	chr2	protein_coding	predicted gene 14403
known_NIR_10826	chr2	177198828;177199096	177199036;177200247	+	177198828	177200247	cassetteExon	ENSMUST00000142549.2	known	0.90	55.5	6	62;49	6	y	0.87	40.5	6	48;33	6	y	0.83	34.5	7	37;32	7	y	0.92	56.5	5	63;50	5	y	0.88	45.0	6	58;32	6	y	0.82	14.0	3	15;13	3	y	0.94	44.0	3	53;35	3	y	0.96	24.5	1	30;19	1	n	0.91	32.0	3	39;25	3	y	0.80	49.5	12	61;38	12	y	0.96	67.5	3	80;55	3	y	0.92	61.5	5	66;57	5	y	ENSMUSG00000094786.2	Gm14403	chr2	protein_coding	predicted gene 14403
known_NIR_10827	chr2	177404693	177409837	+	177404693;177409568	177409532;177409837	ES	ENSMUST00000148388.2	known	0.31	4	9.0	4	8;10	y	0.17	3	14.5	3	16;13	y	0.33	4	8.0	4	9;7	y	0.32	5	10.5	5	12;9	y	0.33	3	6.0	3	7;5	y	0.00	0	2.0	0	1;3	n	0.62	4	2.5	4	1;4	n	0.10	1	9.5	1	9;10	n	0.21	2	7.5	2	9;6	y	0.24	4	13.0	4	13;13	y	0.18	3	14.0	3	20;8	y	0.00	0	10.5	0	12;9	n	ENSMUSG00000078864.11	Gm14322	chr2	protein_coding	predicted gene 14322
known_NIR_10828	chr2	177710193	177711616	-	177710193;177711408	177711348;177711616	ES	ENSMUST00000108924.9	known	0.18	1	4.5	1	3;6	n	0.35	3	5.5	3	2;9	y	0.40	2	3.0	2	3;3	n	0.18	2	9.0	2	3;15	y	0.19	2	8.5	2	5;12	y	0.46	3	3.5	3	3;4	y	0.21	3	11.0	3	3;19	y	0.67	3	1.5	3	0;3	n	0.23	3	10.0	3	1;19	n	0.29	4	10.0	4	2;18	y	0.07	1	12.5	1	2;23	n	0.09	1	10.0	1	4;16	n	ENSMUSG00000078861.9	Zfp931	chr2	protein_coding	zinc finger protein 931
known_NIR_10829	chr2	177710193	177711616	-	177711408	177711616	3pMXE	ENSMUST00000108923.2	known	0.14	1	6	1	6	n	0.25	3	9	3	9	y	0.40	2	3	2	3	n	0.12	2	15	2	15	y	0.14	2	12	2	12	y	0.43	3	4	3	4	n	0.14	3	19	3	19	y	0.50	3	3	3	3	n	0.14	3	19	3	19	y	0.18	4	18	4	18	y	0.04	1	23	1	23	n	0.06	1	16	1	16	n	ENSMUSG00000078861.9	Zfp931	chr2	protein_coding	zinc finger protein 931
known_NIR_10830	chr2	179571217	179573809	-	179571217	179573773	A5SS	ENSMUST00000041618.13	known	0.79	11	3	11	3	y	0.58	7	5	7	5	y	0.80	8	2	8	2	y	0.83	10	2	10	2	y	0.67	14	7	14	7	y	0.50	2	2	2	2	n	0.62	8	5	8	5	y	0.45	5	6	5	6	y	0.75	6	2	6	2	n	0.71	10	4	10	4	y	0.56	5	4	5	4	n	0.82	14	3	14	3	y	ENSMUSG00000039117.17	Taf4	chr2	protein_coding	TATA-box binding protein associated factor 4
known_NIR_10831	chr2	179669828;179670867	179670751;179673154	+	179669828	179673154	cassetteExon	ENSMUST00000055485.12	known	0.08	3.5	41	2;5	41	y	0.12	4.5	32	6;3	32	y	0.16	7.0	37	7;7	37	y	0.08	4.0	48	4;4	48	y	0.13	8.5	58	13;4	58	y	0.10	2.0	18	3;1	18	n	0.23	11.5	39	7;16	39	y	0.03	1.0	32	2;0	32	n	0.07	3.0	42	4;2	42	y	0.10	5.0	46	7;3	46	y	0.15	9.0	51	11;7	51	y	0.07	3.5	46	3;4	46	y	ENSMUSG00000039108.15	Lsm14b	chr2	protein_coding	LSM family member 14B
known_NIR_10832	chr2	179673321	179673854	+	179673321;179673664	179673587;179673854	ES	ENSMUST00000055485.12	known	0.40	17	25.5	17	24;27	y	0.36	18	31.5	18	31;32	y	0.29	16	39.0	16	41;37	y	0.42	26	36.5	26	34;39	y	0.38	35	56.5	35	56;57	y	0.25	8	23.5	8	26;21	y	0.33	24	49.0	24	45;53	y	0.41	16	23.0	16	27;19	y	0.46	16	19.0	16	21;17	y	0.39	25	39.0	25	35;43	y	0.43	22	29.0	22	29;29	y	0.41	31	44.0	31	39;49	y	ENSMUSG00000039108.15	Lsm14b	chr2	protein_coding	LSM family member 14B
known_NIR_10833	chr2	179678632	179678731	-	179678366	179678731	A3SS	ENSMUST00000126021.8	known	0.00	0	583	0	583	n	0.00	2	672	2	672	y	0.00	1	644	1	644	n	0.00	0	507	0	507	n	0.00	0	828	0	828	n	0.01	2	361	2	361	y	0.00	1	816	1	816	n	0.00	0	327	0	327	n	0.00	0	575	0	575	n	0.00	3	812	3	812	y	0.00	3	715	3	715	y	0.00	0	698	0	698	n	ENSMUSG00000027566.16	Psma7	chr2	protein_coding	proteasome subunit alpha 7
known_NIR_10834	chr2	179681272	179684071	-	179681272	179683432	A5SS	ENSMUST00000126021.8	known	1.00	451	2	451	2	y	1.00	465	2	465	2	y	1.00	550	0	550	0	n	1.00	498	0	498	0	n	1.00	598	0	598	0	n	0.99	306	2	306	2	y	1.00	561	0	561	0	n	0.99	237	2	237	2	y	1.00	429	0	429	0	n	1.00	614	0	614	0	n	1.00	494	1	494	1	n	1.00	515	0	515	0	n	ENSMUSG00000027566.16	Psma7	chr2	protein_coding	proteasome subunit alpha 7
known_NIR_10835	chr2	179713679	179714933	+	179713679	179720412	A3SS	ENSMUST00000108901.8	known	0.74	28	10	28	10	y	0.85	22	4	22	4	y	0.82	18	4	18	4	y	0.75	24	8	24	8	y	0.91	40	4	40	4	y	1.00	19	0	19	0	n	0.79	33	9	33	9	y	0.67	16	8	16	8	y	0.91	20	2	20	2	y	0.67	28	14	28	14	y	0.93	27	2	27	2	y	0.59	20	14	20	14	y	ENSMUSG00000039069.20	Mtg2	chr2	protein_coding	mitochondrial ribosome associated GTPase 2
known_NIR_10836	chr2	179719935	179720412	+	179713679	179720412	A5SS	ENSMUST00000108901.8	known	0.80	39	10	39	10	y	0.87	26	4	26	4	y	0.90	35	4	35	4	y	0.78	28	8	28	8	y	0.92	48	4	48	4	y	1.00	18	0	18	0	n	0.82	40	9	40	9	y	0.71	20	8	20	8	y	0.93	25	2	25	2	y	0.79	54	14	54	14	y	0.93	28	2	28	2	y	0.74	39	14	39	14	y	ENSMUSG00000039069.20	Mtg2	chr2	protein_coding	mitochondrial ribosome associated GTPase 2
known_NIR_10837	chr2	179726105	179726244	+	179726075	179726244	A5SS	ENSMUST00000147264.8	known	0.14	8	50	8	50	y	0.22	11	40	11	40	y	0.07	3	39	3	39	y	0.13	9	60	9	60	y	0.06	3	46	3	46	y	0.10	2	18	2	18	y	0.15	10	56	10	56	y	0.14	4	24	4	24	y	0.13	7	45	7	45	y	0.07	5	63	5	63	y	0.16	10	51	10	51	y	0.06	3	48	3	48	y	ENSMUSG00000039069.20	Mtg2	chr2	protein_coding	mitochondrial ribosome associated GTPase 2
known_NIR_10838	chr2	179816739	179817036	+	179816739	179816953	A3SS	ENSMUST00000061437.5	known	0.00	0	232	0	232	n	0.00	0	213	0	213	n	0.00	0	265	0	265	n	0.00	0	197	0	197	n	0.04	12	271	12	271	y	0.00	0	115	0	115	n	0.00	0	295	0	295	n	0.03	4	137	4	137	y	0.00	0	205	0	205	n	0.00	0	276	0	276	n	0.00	0	284	0	284	n	0.02	5	221	5	221	y	ENSMUSG00000039041.16	Adrm1	chr2	protein_coding	adhesion regulating molecule 1
known_NIR_10839	chr2	179906099	179914893	-	179906099;179906267	179906196;179914893	ES	ENSMUST00000108891.2	known	0.05	1	20.0	1	28;12	n	0.07	2	28.0	2	33;23	y	0.00	0	32.0	0	37;27	n	0.00	0	38.0	0	44;32	n	0.04	2	49.5	2	65;34	y	0.06	2	32.0	2	32;32	y	0.03	1	31.5	1	40;23	n	0.09	2	20.5	2	28;13	y	0.07	2	25.5	2	31;20	y	0.02	1	40.0	1	49;31	n	0.00	0	28.0	0	33;23	n	0.06	2	32.5	2	46;19	y	ENSMUSG00000038990.15	Cables2	chr2	protein_coding	CDK5 and Abl enzyme substrate 2
known_NIR_10840	chr2	180226280	180226487	+	180226280	180226590	A3SS	ENSMUST00000169630.8	known	0.08	1	11	1	11	n	0.25	2	6	2	6	n	0.43	6	8	6	8	y	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.14	2	12	2	12	y	0.23	3	10	3	10	y	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.10	1	9	1	9	n	0.00	0	6	0	6	n	0.10	1	9	1	9	n	ENSMUSG00000027569.16	Mrgbp	chr2	protein_coding	MRG/MORF4L binding protein
known_NIR_10841	chr2	180331448;180332426	180332315;180333657	-	180331448	180333657	cassetteExon	ENSMUST00000087517.10	known	0.09	1.5	16	1;2	16	n	0.04	0.5	12	0;1	12	n	0.02	0.5	31	1;0	31	n	0.15	5.0	29	7;3	29	y	0.03	1.0	32	1;1	32	n	0.05	1.0	18	0;2	18	n	0.07	1.5	20	1;2	20	n	0.00	0.0	15	0;0	15	n	0.00	0.0	23	0;0	23	n	0.06	2.0	29	0;4	29	n	0.11	2.0	16	1;3	16	n	0.08	2.5	27	3;2	27	y	ENSMUSG00000038914.16	Dido1	chr2	protein_coding	death inducer-obliterator 1
known_NIR_10842	chr2	180333841	180351703	-	180333841	180343754	5pMXE	ENSMUST00000087517.10	known	0.40	8	12	8	12	y	0.08	1	11	1	11	n	0.00	0	13	0	13	n	0.14	5	31	5	31	y	0.18	6	28	6	28	y	0.50	5	5	5	5	y	0.25	4	12	4	12	y	0.60	3	2	3	2	n	0.11	2	16	2	16	y	0.30	6	14	6	14	y	0.20	3	12	3	12	y	0.15	3	17	3	17	y	ENSMUSG00000038914.16	Dido1	chr2	protein_coding	death inducer-obliterator 1
known_NIR_10843	chr2	180373800	180374226	+	180373870	180374226	A5SS	ENSMUST00000094218.4	known	0.25	4	12	4	12	y	0.45	5	6	5	6	y	0.08	6	67	6	67	y	0.33	2	4	2	4	n	0.10	3	26	3	26	y	0.16	8	41	8	41	y	0.31	5	11	5	11	y	0.20	7	28	7	28	y	0.11	1	8	1	8	n	0.17	1	5	1	5	n	0.08	1	11	1	11	n	0.30	3	7	3	7	y	ENSMUSG00000023393.16	Slc17a9	chr2	protein_coding	solute carrier family 17, member 9
known_NIR_10844	chr2	180378896	180380202	+	180378896;180379472	180379385;180380202	ES	ENSMUST00000094218.4	known	0.04	1	23.5	1	25;22	n	0.04	1	24.5	1	24;25	n	0.16	13	68.0	13	66;70	y	0.00	0	14.0	0	14;14	n	0.00	0	35.5	0	30;41	n	0.05	3	56.0	3	51;61	y	0.09	2	20.5	2	18;23	y	0.00	0	46.5	0	51;42	n	0.00	0	12.0	0	10;14	n	0.00	0	9.5	0	9;10	n	0.05	1	19.0	1	16;22	n	0.05	1	17.5	1	15;20	n	ENSMUSG00000023393.16	Slc17a9	chr2	protein_coding	solute carrier family 17, member 9
known_NIR_10845	chr2	180609122	180609327	+	180609122	180609395	A3SS	ENSMUST00000029092.13	known	0.42	10	14	10	14	y	0.21	4	15	4	15	y	0.27	10	27	10	27	y	0.14	4	25	4	25	y	0.30	11	26	11	26	y	0.29	7	17	7	17	y	0.29	8	20	8	20	y	0.36	8	14	8	14	y	0.30	7	16	7	16	y	0.24	9	28	9	28	y	0.18	3	14	3	14	y	0.19	6	25	6	25	y	ENSMUSG00000027575.20	Arfgap1	chr2	protein_coding	ADP-ribosylation factor GTPase activating protein 1
known_NIR_10846	chr2	180609122	180612844	+	180609122	180609395	A3SS&ES	ENSMUST00000145629.8	known	0.36	8	14	8	14	y	0.42	11	15	11	15	y	0.25	9	27	9	27	y	0.14	4	25	4	25	y	0.21	7	26	7	26	y	0.19	4	17	4	17	y	0.33	10	20	10	20	y	0.26	5	14	5	14	y	0.11	2	16	2	16	y	0.20	7	28	7	28	y	0.36	8	14	8	14	y	0.22	7	25	7	25	y	ENSMUSG00000027575.20	Arfgap1	chr2	protein_coding	ADP-ribosylation factor GTPase activating protein 1
known_NIR_10847	chr2	180609122	180612844	+	180609607	180612844	A5SS	ENSMUST00000108859.8	known	0.20	8	32	8	32	y	0.32	11	23	11	23	y	0.11	9	76	9	76	y	0.10	4	35	4	35	y	0.11	7	54	7	54	y	0.12	4	29	4	29	y	0.19	10	42	10	42	y	0.15	5	28	5	28	y	0.08	2	24	2	24	y	0.12	7	51	7	51	y	0.17	8	38	8	38	y	0.17	7	35	7	35	y	ENSMUSG00000027575.20	Arfgap1	chr2	protein_coding	ADP-ribosylation factor GTPase activating protein 1
known_NIR_10848	chr2	180609122;180609607	180609327;180612844	+	180609122	180612844	cassetteExon	ENSMUST00000108862.8	known	0.72	21.0	8	10;32	8	y	0.55	13.5	11	4;23	11	y	0.83	43.0	9	10;76	9	y	0.83	19.5	4	4;35	4	y	0.82	32.5	7	11;54	7	y	0.82	18.0	4	7;29	4	y	0.71	25.0	10	8;42	10	y	0.78	18.0	5	8;28	5	y	0.89	15.5	2	7;24	2	y	0.81	30.0	7	9;51	7	y	0.72	20.5	8	3;38	8	y	0.75	20.5	7	6;35	7	y	ENSMUSG00000027575.20	Arfgap1	chr2	protein_coding	ADP-ribosylation factor GTPase activating protein 1
known_NIR_10849	chr2	180609122;180609607	180609395;180612844	+	180609122	180612844	cassetteExon	ENSMUST00000108862.8	known	0.74	23.0	8	14;32	8	y	0.63	19.0	11	15;23	11	y	0.85	51.5	9	27;76	9	y	0.88	30.0	4	25;35	4	y	0.85	40.0	7	26;54	7	y	0.85	23.0	4	17;29	4	y	0.76	31.0	10	20;42	10	y	0.81	21.0	5	14;28	5	y	0.91	20.0	2	16;24	2	y	0.85	39.5	7	28;51	7	y	0.76	26.0	8	14;38	8	y	0.81	30.0	7	25;35	7	y	ENSMUSG00000027575.20	Arfgap1	chr2	protein_coding	ADP-ribosylation factor GTPase activating protein 1
known_NIR_10850	chr2	180609607	180612807	+	180609607	180612844	A3SS	ENSMUST00000029092.13	known	0.00	0	32	0	32	n	0.12	3	23	3	23	y	0.01	1	76	1	76	n	0.00	0	35	0	35	n	0.00	0	54	0	54	n	0.00	0	29	0	29	n	0.00	0	42	0	42	n	0.00	0	28	0	28	n	0.00	0	24	0	24	n	0.00	0	51	0	51	n	0.00	0	38	0	38	n	0.00	0	35	0	35	n	ENSMUSG00000027575.20	Arfgap1	chr2	protein_coding	ADP-ribosylation factor GTPase activating protein 1
known_NIR_10851	chr2	180612907	180613777	+	180612907;180613476	180613367;180613777	ES	ENSMUST00000108862.8	known	0.13	7	48.5	7	35;62	y	0.00	0	44.5	0	38;51	n	0.02	2	87.0	2	90;84	y	0.03	2	58.5	2	46;71	y	0.12	8	59.0	8	63;55	y	0.02	1	47.0	1	40;54	n	0.05	3	63.5	3	55;72	y	0.07	3	42.0	3	39;45	y	0.00	0	36.0	0	33;39	n	0.08	5	60.0	5	57;63	y	0.03	1	31.5	1	32;31	n	0.04	2	52.5	2	60;45	y	ENSMUSG00000027575.20	Arfgap1	chr2	protein_coding	ADP-ribosylation factor GTPase activating protein 1
known_NIR_10852	chr2	180621020;180621513	180621454;180622191	+	180621020	180622191	cassetteExon	ENSMUST00000108862.8	known	0.94	67.0	4	67;67	4	y	0.95	74.0	4	75;73	4	y	0.92	110.5	9	119;102	9	y	0.97	66.5	2	65;68	2	y	0.92	98.5	9	93;104	9	y	0.88	58.0	8	64;52	8	y	0.96	82.0	3	90;74	3	y	0.93	54.0	4	52;56	4	y	0.91	53.5	5	51;56	5	y	0.90	78.5	9	94;63	9	y	0.90	71.5	8	70;73	8	y	0.96	67.5	3	71;64	3	y	ENSMUSG00000027575.20	Arfgap1	chr2	protein_coding	ADP-ribosylation factor GTPase activating protein 1
known_NIR_10853	chr2	180622267	180622838	+	180622267	180622830	A3SS	ENSMUST00000108862.8	known	0.00	0	93	0	93	n	0.00	0	88	0	88	n	0.00	0	125	0	125	n	0.00	0	87	0	87	n	0.01	2	133	2	133	y	0.00	0	70	0	70	n	0.00	0	102	0	102	n	0.00	0	74	0	74	n	0.00	0	68	0	68	n	0.00	0	90	0	90	n	0.00	0	85	0	85	n	0.00	0	69	0	69	n	ENSMUSG00000027575.20	Arfgap1	chr2	protein_coding	ADP-ribosylation factor GTPase activating protein 1
known_NIR_10854	chr2	18069649	18069846	+	18069675	18069846	A5SS	ENSMUST00000114671.8	known	0.33	1	2	1	2	n	0.83	5	1	5	1	n	0.00	0	9	0	9	n	0.80	4	1	4	1	n	0.67	10	5	10	5	y	0.67	6	3	6	3	n	0.22	2	7	2	7	n	-	-	-	-	-	-	0.60	6	4	6	4	y	0.64	7	4	7	4	y	1.00	5	0	5	0	n	0.36	8	14	8	14	y	ENSMUSG00000026743.17	Mllt10	chr2	protein_coding	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10
known_NIR_10855	chr2	18076015	18087322	+	18076015	18114593	A3SS	ENSMUST00000154041.8	known	0.80	4	1	4	1	n	1.00	2	0	2	0	n	1.00	5	0	5	0	n	0.38	3	5	3	5	n	0.80	8	2	8	2	y	0.50	3	3	3	3	n	0.75	3	1	3	1	n	0.57	4	3	4	3	n	0.67	2	1	2	1	n	1.00	6	0	6	0	n	1.00	5	0	5	0	n	0.60	6	4	6	4	y	ENSMUSG00000026743.17	Mllt10	chr2	protein_coding	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10
known_NIR_10856	chr2	18076015	18114593	+	18076015;18106323	18106269;18114593	ES	ENSMUST00000028076.15	known	0.15	1	5.5	1	6;5	n	0.00	0	5.0	0	5;5	n	0.00	0	13.5	0	14;13	n	0.38	5	8.0	5	10;6	y	0.11	2	15.5	2	17;14	y	0.35	3	5.5	3	7;4	y	0.06	1	16.0	1	15;17	n	0.33	3	6.0	3	5;7	y	0.09	1	10.0	1	9;11	n	0.00	0	3.5	0	0;7	n	0.00	0	7.0	0	8;6	n	0.24	4	13.0	4	12;14	y	ENSMUSG00000026743.17	Mllt10	chr2	protein_coding	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10
known_NIR_10857	chr2	18076015;18087536	18087322;18106269	+	18076015	18106269	cassetteExon	ENSMUST00000028076.15	known	0.25	2.0	6	4;0	6	n	0.17	1.0	5	2;0	5	n	0.18	3.0	14	5;1	14	n	0.13	1.5	10	3;0	10	n	0.19	4.0	17	8;0	17	n	0.18	1.5	7	3;0	7	n	0.14	2.5	15	3;2	15	y	0.38	3.0	5	4;2	5	y	0.10	1.0	9	2;0	9	n	1.00	3.0	0	6;0	0	n	0.24	2.5	8	5;0	8	n	0.25	4.0	12	6;2	12	y	ENSMUSG00000026743.17	Mllt10	chr2	protein_coding	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10
known_NIR_10858	chr2	18076015;18087536	18087322;18106269	+	18076015;18097645	18097595;18106269	MXE	ENSMUST00000114671.8	known	1.00	2.0	0.0	4;0	0;0	n	0.33	1.0	2.0	2;0	2;2	n	0.50	3.0	3.0	5;1	2;4	n	0.33	1.5	3.0	3;0	3;3	n	0.67	4.0	2.0	8;0	2;2	n	0.50	1.5	1.5	3;0	2;1	n	0.42	2.5	3.5	3;2	5;2	y	1.00	3.0	0.0	4;2	0;0	n	0.25	1.0	3.0	2;0	3;3	n	0.35	3.0	5.5	6;0	6;5	n	0.42	2.5	3.5	5;0	3;4	n	0.57	4.0	3.0	6;2	3;3	y	ENSMUSG00000026743.17	Mllt10	chr2	protein_coding	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10
known_NIR_10859	chr2	18076015;18097645	18097595;18106269	+	18076015	18106269	cassetteExon	ENSMUST00000028076.15	known	0.00	0.0	6	0;0	6	n	0.29	2.0	5	2;2	5	n	0.18	3.0	14	2;4	14	y	0.23	3.0	10	3;3	10	y	0.11	2.0	17	2;2	17	y	0.18	1.5	7	2;1	7	n	0.19	3.5	15	5;2	15	y	0.00	0.0	5	0;0	5	n	0.25	3.0	9	3;3	9	y	1.00	5.5	0	6;5	0	n	0.30	3.5	8	3;4	8	y	0.20	3.0	12	3;3	12	y	ENSMUSG00000026743.17	Mllt10	chr2	protein_coding	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10
known_NIR_10860	chr2	180829247	180829458	+	180829247	180829343	A3SS	ENSMUST00000016488.13	known	0.57	159	120	159	120	y	0.52	157	144	157	144	y	0.60	87	58	87	58	y	0.54	136	117	136	117	y	0.54	177	149	177	149	y	0.63	64	37	64	37	y	0.57	167	127	167	127	y	0.50	64	63	64	63	y	0.54	114	96	114	96	y	0.52	196	178	196	178	y	0.52	176	164	176	164	y	0.57	143	107	143	107	y	ENSMUSG00000016344.15	Ppdpf	chr2	protein_coding	pancreatic progenitor cell differentiation and proliferation factor
known_NIR_10861	chr2	180882864	180883605	-	180882864	180883759	A5SS	ENSMUST00000108831.8	known	0.07	1	13	1	13	n	0.17	1	5	1	5	n	0.30	6	14	6	14	y	0.12	3	21	3	21	y	0.06	1	16	1	16	n	0.00	0	12	0	12	n	0.29	2	5	2	5	n	0.13	2	13	2	13	y	0.00	0	8	0	8	n	0.12	2	14	2	14	y	0.14	1	6	1	6	n	0.00	0	3	0	3	n	ENSMUSG00000027580.18	Helz2	chr2	protein_coding	helicase with zinc finger 2, transcriptional coactivator
known_NIR_10862	chr2	180902191	180906763	-	180902191	180906774	A5SS	ENSMUST00000049032.13	known	0.07	1	13	1	13	n	0.11	1	8	1	8	n	0.17	5	25	5	25	y	0.22	5	18	5	18	y	0.00	0	21	0	21	n	0.00	0	15	0	15	n	0.13	2	13	2	13	y	0.00	0	10	0	10	n	0.12	2	15	2	15	y	0.08	2	22	2	22	y	0.15	2	11	2	11	y	0.22	6	21	6	21	y	ENSMUSG00000038705.14	Gmeb2	chr2	protein_coding	glucocorticoid modulatory element binding protein 2
known_NIR_10863	chr2	180919914	180928790	-	180919914	180929677	A5SS	ENSMUST00000049032.13	known	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.13	2	13	2	13	y	0.00	0	7	0	7	n	0.42	8	11	8	11	y	0.11	1	8	1	8	n	0.15	2	11	2	11	y	0.27	4	11	4	11	y	0.17	1	5	1	5	n	0.00	0	8	0	8	n	0.25	2	6	2	6	n	0.00	0	5	0	5	n	ENSMUSG00000038705.14	Gmeb2	chr2	protein_coding	glucocorticoid modulatory element binding protein 2
known_NIR_10864	chr2	180977839;180980147	180980028;180980849	+	180977839	180980849	cassetteExon	ENSMUST00000098971.11	known	0.00	0.0	10	0;0	10	n	0.00	0.0	5	0;0	5	n	0.17	1.0	5	0;2	5	n	0.10	1.0	9	1;1	9	n	0.00	0.0	9	0;0	9	n	0.00	0.0	10	0;0	10	n	0.25	2.0	6	2;2	6	y	0.00	0.0	5	0;0	5	n	0.20	1.0	4	2;0	4	n	0.14	1.0	6	2;0	6	n	0.14	1.0	6	1;1	6	n	0.13	2.0	13	1;3	13	n	ENSMUSG00000038685.19	Rtel1	chr2	protein_coding	regulator of telomere elongation helicase 1
known_NIR_10865	chr2	180996235	180997121	+	180996235	180996802	A3SS&ES	ENSMUST00000054622.15	known	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.05	1	18	1	18	n	0.00	0	5	0	5	n	0.25	2	6	2	6	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.05	1	20	1	20	n	0.18	2	9	2	9	y	0.00	0	10	0	10	n	ENSMUSG00000038685.19	Rtel1	chr2	protein_coding	regulator of telomere elongation helicase 1
known_NIR_10866	chr2	180996235	180997121	+	180996235;180996918	180996802;180997121	ES	ENSMUST00000139608.8	known	0.00	0	7.0	0	8;6	n	0.00	0	5.5	0	6;5	n	0.00	0	6.0	0	8;4	n	0.00	0	6.0	0	7;5	n	0.08	1	11.5	1	18;5	n	0.00	0	3.0	0	5;1	n	0.31	2	4.5	2	6;3	y	0.00	0	5.0	0	7;3	n	0.00	0	4.0	0	6;2	n	0.07	1	14.0	1	20;8	n	0.25	2	6.0	2	9;3	y	0.00	0	10.0	0	10;10	n	ENSMUSG00000038685.19	Rtel1	chr2	protein_coding	regulator of telomere elongation helicase 1
known_NIR_10867	chr2	180996918	180997103	+	180996918	180997121	A3SS	ENSMUST00000139608.8	known	0.33	3	6	3	6	n	0.38	3	5	3	5	n	0.50	4	4	4	4	n	0.38	3	5	3	5	n	0.38	3	5	3	5	n	0.75	3	1	3	1	n	0.70	7	3	7	3	y	0.40	2	3	2	3	n	0.60	3	2	3	2	n	0.38	5	8	5	8	y	0.80	12	3	12	3	y	0.41	7	10	7	10	y	ENSMUSG00000038685.19	Rtel1	chr2	protein_coding	regulator of telomere elongation helicase 1
known_NIR_10868	chr2	180996918	180997210	+	180996918	180997121	A3SS	ENSMUST00000139608.8	known	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.40	2	3	2	3	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.17	2	10	2	10	y	ENSMUSG00000038685.19	Rtel1	chr2	protein_coding	regulator of telomere elongation helicase 1
known_NIR_10869	chr2	180997872	180997951	+	180997752	180997951	A5SS	ENSMUST00000133856.8	known	1.00	8	0	8	0	n	1.00	7	0	7	0	n	1.00	3	0	3	0	n	1.00	6	0	6	0	n	1.00	10	0	10	0	n	1.00	2	0	2	0	n	1.00	14	0	14	0	n	1.00	7	0	7	0	n	0.91	10	1	10	1	n	0.92	11	1	11	1	n	0.82	9	2	9	2	y	1.00	2	0	2	0	n	ENSMUSG00000038685.19	Rtel1	chr2	protein_coding	regulator of telomere elongation helicase 1
known_NIR_10870	chr2	180998051	180998139	+	180998051	180998151	A3SS	ENSMUST00000124149.2	known	0.40	4	6	4	6	y	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.27	4	11	4	11	y	0.00	0	7	0	7	n	0.20	2	8	2	8	y	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.22	2	7	2	7	n	ENSMUSG00000038685.19	Rtel1	chr2	protein_coding	regulator of telomere elongation helicase 1
known_NIR_10871	chr2	181001532	181003184	-	181001532	181002794	A5SS	ENSMUST00000048269.12	known	0.00	0	66	0	66	n	0.03	2	73	2	73	y	0.11	6	51	6	51	y	0.11	5	42	5	42	y	0.05	3	62	3	62	y	0.05	1	20	1	20	n	0.01	1	73	1	73	n	0.06	2	34	2	34	y	0.11	5	40	5	40	y	0.06	4	63	4	63	y	0.05	3	61	3	61	y	0.05	3	61	3	61	y	ENSMUSG00000038671.16	Arfrp1	chr2	protein_coding	ADP-ribosylation factor related protein 1
known_NIR_10872	chr2	181001532	181003184	-	181001532;181002864	181002794;181003184	ES	ENSMUST00000170190.8	known	0.00	0	54.5	0	66;43	n	0.03	2	61.0	2	73;49	y	0.12	6	42.5	6	51;34	y	0.13	5	33.5	5	42;25	y	0.05	3	55.0	3	62;48	y	0.05	1	21.0	1	20;22	n	0.02	1	61.0	1	73;49	n	0.06	2	30.5	2	34;27	y	0.12	5	36.0	5	40;32	y	0.06	4	60.5	4	63;58	y	0.05	3	55.5	3	61;50	y	0.05	3	53.5	3	61;46	y	ENSMUSG00000038671.16	Arfrp1	chr2	protein_coding	ADP-ribosylation factor related protein 1
known_NIR_10873	chr2	181003348	181005807	-	181003265	181005807	A3SS	ENSMUST00000170190.8	known	0.01	1	73	1	73	n	0.00	0	66	0	66	n	0.02	1	62	1	62	n	0.00	0	63	0	63	n	0.01	1	87	1	87	n	0.03	1	29	1	29	n	0.03	2	70	2	70	y	0.00	0	35	0	35	n	0.00	0	58	0	58	n	0.00	0	91	0	91	n	0.01	1	70	1	70	n	0.00	0	74	0	74	n	ENSMUSG00000038671.16	Arfrp1	chr2	protein_coding	ADP-ribosylation factor related protein 1
known_NIR_10874	chr2	181005988	181006104	-	181005889	181006104	A3SS	ENSMUST00000170190.8	known	0.05	4	71	4	71	y	0.07	4	56	4	56	y	0.05	3	63	3	63	y	0.00	0	71	0	71	n	0.05	4	71	4	71	y	0.00	0	36	0	36	n	0.07	6	76	6	76	y	0.00	0	27	0	27	n	0.06	3	46	3	46	y	0.00	0	82	0	82	n	0.05	3	55	3	55	y	0.02	2	86	2	86	y	ENSMUSG00000038671.16	Arfrp1	chr2	protein_coding	ADP-ribosylation factor related protein 1
known_NIR_10875	chr2	181006491	181007012	-	181006504	181007012	A3SS	ENSMUST00000185118.8	known	0.00	0	24	0	24	n	0.12	4	30	4	30	y	0.30	8	19	8	19	y	0.07	2	28	2	28	y	0.15	6	33	6	33	y	0.11	2	16	2	16	y	0.06	2	34	2	34	y	0.00	0	8	0	8	n	0.00	0	31	0	31	n	0.02	1	40	1	40	n	0.00	0	26	0	26	n	0.00	0	28	0	28	n	ENSMUSG00000038671.16	Arfrp1	chr2	protein_coding	ADP-ribosylation factor related protein 1
known_NIR_10876	chr2	181021972	181022196	+	181021972	181022168	A3SS	ENSMUST00000029105.12	known	0.12	6	42	6	42	y	0.03	2	59	2	59	y	0.06	3	47	3	47	y	0.16	8	42	8	42	y	0.12	8	59	8	59	y	0.00	0	35	0	35	n	0.11	7	58	7	58	y	0.09	3	29	3	29	y	0.00	0	35	0	35	n	0.06	5	74	5	74	y	0.21	9	34	9	34	y	0.06	3	46	3	46	y	ENSMUSG00000027582.17	Zgpat	chr2	protein_coding	zinc finger, CCCH-type with G patch domain
known_NIR_10877	chr2	181021972	181024280	+	181021972	181022168	3pMXE	ENSMUST00000029105.12	known	0.00	0	42	0	42	n	0.00	0	59	0	59	n	0.00	0	47	0	47	n	0.00	0	42	0	42	n	0.00	0	59	0	59	n	0.00	0	35	0	35	n	0.00	0	58	0	58	n	0.00	0	29	0	29	n	0.00	0	35	0	35	n	0.00	0	74	0	74	n	0.00	0	34	0	34	n	0.04	2	46	2	46	y	ENSMUSG00000027582.17	Zgpat	chr2	protein_coding	zinc finger, CCCH-type with G patch domain
known_NIR_10878	chr2	181021972	181024280	+	181024107	181024280	A5SS	ENSMUST00000131284.8	known	0.00	0	30	0	30	n	0.00	0	33	0	33	n	0.00	0	20	0	20	n	0.00	0	32	0	32	n	0.00	0	33	0	33	n	0.00	0	12	0	12	n	0.00	0	29	0	29	n	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.00	0	40	0	40	n	0.00	0	22	0	22	n	0.05	2	35	2	35	y	ENSMUSG00000027582.17	Zgpat	chr2	protein_coding	zinc finger, CCCH-type with G patch domain
known_NIR_10879	chr2	181024496	181025051	+	181024496	181024592	3pMXE	ENSMUST00000140943.8	known	0.00	0	36	0	36	n	0.06	2	31	2	31	y	0.00	0	24	0	24	n	0.04	1	23	1	23	n	0.00	0	35	0	35	n	0.00	0	12	0	12	n	0.04	1	23	1	23	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	34	0	34	n	0.00	0	11	0	11	n	0.00	0	20	0	20	n	ENSMUSG00000090077.10	Lime1	chr2	protein_coding	Lck interacting transmembrane adaptor 1
known_NIR_10880	chr2	181024496	181025051	+	181024496;181024953	181024592;181025051	ES	ENSMUST00000116366.9	known	0.00	0	40.0	0	36;44	n	0.05	2	38.0	2	31;45	y	0.00	0	33.5	0	24;43	n	0.04	1	25.0	1	23;27	n	0.00	0	36.0	0	35;37	n	0.00	0	14.5	0	12;17	n	0.03	1	33.5	1	23;44	n	0.00	0	15.5	0	15;16	n	0.00	0	18.5	0	10;27	n	0.00	0	36.5	0	34;39	n	0.00	0	34.0	0	11;57	n	0.00	0	31.0	0	20;42	n	ENSMUSG00000027582.17	Zgpat	chr2	protein_coding	zinc finger, CCCH-type with G patch domain
known_NIR_10881	chr2	181139125;181141246	181141096;181141638	+	181139125	181141638	cassetteExon	ENSMUST00000183956.8	known	0.01	0.5	64	1;0	64	n	0.00	0.0	73	0;0	73	n	0.01	1.0	142	1;1	142	n	0.00	0.0	87	0;0	87	n	0.03	3.5	124	4;3	124	y	0.00	0.0	67	0;0	67	n	0.02	1.5	92	3;0	92	n	0.00	0.0	61	0;0	61	n	0.02	1.0	64	1;1	64	n	0.00	0.5	107	0;1	107	n	0.01	1.0	76	1;1	76	n	0.01	0.5	97	0;1	97	n	ENSMUSG00000000827.19	Tpd52l2	chr2	protein_coding	tumor protein D52-like 2
known_NIR_10882	chr2	181143846	181149959	+	181143846	181144669	A3SS&ES	ENSMUST00000183956.8	known	0.00	0	145	0	145	n	0.02	3	125	3	125	y	0.02	4	219	4	219	y	0.05	6	119	6	119	y	0.03	4	154	4	154	y	0.01	1	98	1	98	n	0.03	5	159	5	159	y	0.06	5	83	5	83	y	0.04	4	90	4	90	y	0.03	4	133	4	133	y	0.06	7	106	7	106	y	0.03	4	145	4	145	y	ENSMUSG00000000827.19	Tpd52l2	chr2	protein_coding	tumor protein D52-like 2
known_NIR_10883	chr2	181143846	181149959	+	181143846;181144728	181144669;181149959	ES	ENSMUST00000184588.8	known	0.00	0	139.0	0	145;133	n	0.02	3	127.5	3	125;130	y	0.02	4	209.0	4	219;199	y	0.05	6	113.5	6	119;108	y	0.03	4	152.0	4	154;150	y	0.01	1	93.0	1	98;88	n	0.03	5	152.5	5	159;146	y	0.05	5	88.5	5	83;94	y	0.04	4	95.0	4	90;100	y	0.03	4	131.5	4	133;130	y	0.06	7	107.0	7	106;108	y	0.03	4	145.5	4	145;146	y	ENSMUSG00000000827.19	Tpd52l2	chr2	protein_coding	tumor protein D52-like 2
known_NIR_10884	chr2	181150060	181152297	+	181150060	181154832	A3SS	ENSMUST00000184588.8	known	0.01	1	110	1	110	n	0.00	0	106	0	106	n	0.02	3	176	3	176	y	0.01	1	102	1	102	n	0.00	0	143	0	143	n	0.01	1	88	1	88	n	0.06	10	148	10	148	y	0.03	2	75	2	75	y	0.00	0	86	0	86	n	0.00	0	130	0	130	n	0.01	1	115	1	115	n	0.00	0	139	0	139	n	ENSMUSG00000000827.19	Tpd52l2	chr2	protein_coding	tumor protein D52-like 2
known_NIR_10885	chr2	181150060;181152323	181152297;181153367	+	181150060	181153367	cassetteExon	ENSMUST00000149163.8	known	0.18	1.5	7	1;2	7	n	0.00	0.0	4	0;0	4	n	0.07	2.5	33	3;2	33	y	0.10	1.0	9	1;1	9	n	0.03	0.5	16	0;1	16	n	0.11	1.0	8	1;1	8	n	0.37	10.0	17	10;10	17	y	0.29	2.0	5	2;2	5	n	0.05	0.5	9	0;1	9	n	0.00	0.0	8	0;0	8	n	0.10	1.0	9	1;1	9	n	0.08	1.0	12	0;2	12	n	ENSMUSG00000000827.19	Tpd52l2	chr2	protein_coding	tumor protein D52-like 2
known_NIR_10886	chr2	181150060;181153408	181153367;181154832	+	181150060	181154832	cassetteExon	ENSMUST00000184588.8	known	0.08	10.0	110	7;13	110	y	0.06	7.0	106	4;10	106	y	0.17	36.0	176	33;39	176	y	0.09	10.5	102	9;12	102	y	0.12	19.0	143	16;22	143	y	0.10	9.5	88	8;11	88	y	0.16	29.0	148	17;41	148	y	0.09	7.0	75	5;9	75	y	0.10	10.0	86	9;11	86	y	0.08	11.5	130	8;15	130	y	0.08	10.5	115	9;12	115	y	0.08	12.5	139	12;13	139	y	ENSMUSG00000000827.19	Tpd52l2	chr2	protein_coding	tumor protein D52-like 2
known_NIR_10887	chr2	181162490;181163080	181163028;181188164	+	181162490	181188164	cassetteExon	ENSMUST00000072334.12	known	0.14	6.0	36	7;5	36	y	0.06	1.0	15	1;1	15	n	0.17	13.0	62	9;17	62	y	0.11	7.5	58	8;7	58	y	0.19	14.0	58	12;16	58	y	0.05	1.5	27	2;1	27	n	0.16	10.0	53	9;11	53	y	0.15	7.5	44	6;9	44	y	0.12	4.0	30	7;1	30	n	0.14	9.0	57	8;10	57	y	0.15	6.5	36	6;7	36	y	0.22	11.0	38	9;13	38	y	ENSMUSG00000000826.17	Dnajc5	chr2	protein_coding	DnaJ heat shock protein family (Hsp40) member C5
known_NIR_10888	chr2	181190634;181190793	181190719;181191066	+	181190634	181191066	cassetteExon	ENSMUST00000072334.12	known	0.44	35.0	44	32;38	44	y	0.56	24.0	19	21;27	19	y	0.36	55.0	99	54;56	99	y	0.39	40.0	63	47;33	63	y	0.44	52.5	68	59;46	68	y	0.39	29.0	45	30;28	45	y	0.41	42.5	61	48;37	61	y	0.42	27.0	38	29;25	38	y	0.56	34.5	27	39;30	27	y	0.47	51.0	58	57;45	58	y	0.48	31.5	34	28;35	34	y	0.54	46.5	40	50;43	40	y	ENSMUSG00000000826.17	Dnajc5	chr2	protein_coding	DnaJ heat shock protein family (Hsp40) member C5
known_NIR_10889	chr2	181211417	181211489	-	181211417	181211504	A5SS	ENSMUST00000134340.8	known	1.00	49	0	49	0	n	1.00	25	0	25	0	n	1.00	44	0	44	0	n	0.96	53	2	53	2	y	1.00	53	0	53	0	n	1.00	36	0	36	0	n	0.93	70	5	70	5	y	1.00	31	0	31	0	n	1.00	41	0	41	0	n	0.98	65	1	65	1	n	0.98	65	1	65	1	n	1.00	55	0	55	0	n	ENSMUSG00000089917.8	Uckl1	chr2	protein_coding	uridine-cytidine kinase 1-like 1
known_NIR_10890	chr2	181211973	181212102	-	181211988	181212102	A3SS	ENSMUST00000134340.8	known	0.00	0	64	0	64	n	0.00	0	42	0	42	n	0.00	0	52	0	52	n	0.02	1	43	1	43	n	0.00	0	65	0	65	n	0.00	0	33	0	33	n	0.00	0	62	0	62	n	0.00	0	32	0	32	n	0.00	0	36	0	36	n	0.00	0	80	0	80	n	0.03	2	61	2	61	y	0.05	3	57	3	57	y	ENSMUSG00000089917.8	Uckl1	chr2	protein_coding	uridine-cytidine kinase 1-like 1
known_NIR_10891	chr2	181211988	181212100	-	181211988	181212102	A5SS	ENSMUST00000134340.8	known	0.00	0	64	0	64	n	0.02	1	42	1	42	n	0.00	0	52	0	52	n	0.00	0	43	0	43	n	0.07	5	65	5	65	y	0.00	0	33	0	33	n	0.05	3	62	3	62	y	0.06	2	32	2	32	y	0.00	0	36	0	36	n	0.00	0	80	0	80	n	0.02	1	61	1	61	n	0.00	0	57	0	57	n	ENSMUSG00000089917.8	Uckl1	chr2	protein_coding	uridine-cytidine kinase 1-like 1
known_NIR_10892	chr2	181212391	181213296	-	181212391	181214263	A5SS	ENSMUST00000057816.15	known	0.00	0	19	0	19	n	0.00	0	22	0	22	n	0.10	2	19	2	19	y	0.00	0	25	0	25	n	0.00	0	27	0	27	n	0.00	0	24	0	24	n	0.00	0	29	0	29	n	0.00	0	17	0	17	n	0.00	0	18	0	18	n	0.00	0	29	0	29	n	0.00	0	21	0	21	n	0.00	0	28	0	28	n	ENSMUSG00000089917.8	Uckl1	chr2	protein_coding	uridine-cytidine kinase 1-like 1
known_NIR_10893	chr2	181212391	181214867	-	181212391	181214263	5pMXE	ENSMUST00000138408.8	known	0.17	4	19	4	19	y	0.19	5	22	5	22	y	0.14	3	19	3	19	y	0.07	2	25	2	25	y	0.23	8	27	8	27	y	0.08	2	24	2	24	y	0.09	3	29	3	29	y	0.00	0	17	0	17	n	0.14	3	18	3	18	y	0.24	9	29	9	29	y	0.05	1	21	1	21	n	0.22	8	28	8	28	y	ENSMUSG00000089917.8	Uckl1	chr2	protein_coding	uridine-cytidine kinase 1-like 1
known_NIR_10894	chr2	181212391	181214867	-	181212391;181214279	181214263;181214867	ES	ENSMUST00000057816.15	known	0.17	4	20.0	4	19;21	y	0.18	5	22.5	5	22;23	y	0.12	3	21.0	3	19;23	y	0.07	2	26.5	2	25;28	y	0.21	8	31.0	8	27;35	y	0.08	2	24.0	2	24;24	y	0.09	3	29.5	3	29;30	y	0.00	0	18.5	0	17;20	n	0.12	3	22.0	3	18;26	y	0.21	9	33.5	9	29;38	y	0.04	1	22.0	1	21;23	n	0.21	8	30.0	8	28;32	y	ENSMUSG00000089917.8	Uckl1	chr2	protein_coding	uridine-cytidine kinase 1-like 1
known_NIR_10895	chr2	181212391	181214867	-	181214279	181214867	3pMXE	ENSMUST00000142491.8	known	0.16	4	21	4	21	y	0.18	5	23	5	23	y	0.12	3	23	3	23	y	0.07	2	28	2	28	y	0.19	8	35	8	35	y	0.08	2	24	2	24	y	0.09	3	30	3	30	y	0.00	0	20	0	20	n	0.10	3	26	3	26	y	0.19	9	38	9	38	y	0.04	1	23	1	23	n	0.20	8	32	8	32	y	ENSMUSG00000089917.8	Uckl1	chr2	protein_coding	uridine-cytidine kinase 1-like 1
known_NIR_10896	chr2	181216830	181220340	-	181216830	181223649	A5SS	ENSMUST00000057816.15	known	0.00	0	22	0	22	n	0.00	0	17	0	17	n	0.00	0	26	0	26	n	0.00	0	17	0	17	n	0.00	0	24	0	24	n	0.00	0	13	0	13	n	0.00	0	36	0	36	n	0.04	1	24	1	24	n	0.00	0	24	0	24	n	0.07	2	26	2	26	y	0.04	1	25	1	25	n	0.00	0	31	0	31	n	ENSMUSG00000089917.8	Uckl1	chr2	protein_coding	uridine-cytidine kinase 1-like 1
known_NIR_10897	chr2	181216830	181223196	-	181216830	181223649	A5SS	ENSMUST00000057816.15	known	0.00	0	22	0	22	n	0.06	1	17	1	17	n	0.00	0	26	0	26	n	0.06	1	17	1	17	n	0.00	0	24	0	24	n	0.00	0	13	0	13	n	0.00	0	36	0	36	n	0.00	0	24	0	24	n	0.11	3	24	3	24	y	0.10	3	26	3	26	y	0.04	1	25	1	25	n	0.06	2	31	2	31	y	ENSMUSG00000089917.8	Uckl1	chr2	protein_coding	uridine-cytidine kinase 1-like 1
known_NIR_10898	chr2	181216830	181226619	-	181216830	181223649	5pMXE	ENSMUST00000057816.15	known	0.00	0	22	0	22	n	0.00	0	17	0	17	n	0.00	0	26	0	26	n	0.00	0	17	0	17	n	0.08	2	24	2	24	y	0.00	0	13	0	13	n	0.00	0	36	0	36	n	0.00	0	24	0	24	n	0.04	1	24	1	24	n	0.00	0	26	0	26	n	0.00	0	25	0	25	n	0.00	0	31	0	31	n	ENSMUSG00000089917.8	Uckl1	chr2	protein_coding	uridine-cytidine kinase 1-like 1
known_NIR_10899	chr2	181229896	181230007	-	181229872	181230007	A3SS	ENSMUST00000108789.9	known	0.03	1	28	1	28	n	0.06	1	17	1	17	n	0.00	0	34	0	34	n	0.00	0	32	0	32	n	0.09	4	43	4	43	y	0.00	0	27	0	27	n	0.00	0	25	0	25	n	0.12	3	22	3	22	y	0.00	0	29	0	29	n	0.02	1	45	1	45	n	0.08	2	23	2	23	y	0.07	4	50	4	50	y	ENSMUSG00000000823.17	Zfp512b	chr2	protein_coding	zinc finger protein 512B
known_NIR_10900	chr2	181230313	181230418	-	181230313	181230448	A5SS	ENSMUST00000108789.9	known	0.28	5	13	5	13	y	0.15	3	17	3	17	y	0.23	10	34	10	34	y	0.05	1	19	1	19	n	0.15	7	41	7	41	y	0.17	3	15	3	15	y	0.04	1	27	1	27	n	0.19	3	13	3	13	y	0.22	6	21	6	21	y	0.22	8	28	8	28	y	0.08	1	12	1	12	n	0.07	3	39	3	39	y	ENSMUSG00000000823.17	Zfp512b	chr2	protein_coding	zinc finger protein 512B
known_NIR_10901	chr2	181231974	181232653	-	181231974;181232405	181232263;181232653	ES	ENSMUST00000108789.9	known	0.00	0	13.5	0	16;11	n	0.00	0	7.5	0	8;7	n	0.32	6	13.0	6	13;13	y	0.42	15	21.0	15	28;14	y	0.23	7	23.5	7	18;29	y	0.22	4	14.5	4	12;17	y	0.10	2	18.0	2	13;23	y	0.38	10	16.5	10	10;23	y	0.22	5	18.0	5	15;21	y	0.22	5	17.5	5	18;17	y	0.17	3	15.0	3	11;19	y	0.36	12	21.0	12	24;18	y	ENSMUSG00000000823.17	Zfp512b	chr2	protein_coding	zinc finger protein 512B
known_NIR_10902	chr2	181231974	181232653	-	181232405	181232653	3pMXE	ENSMUST00000153998.2	known	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.32	6	13	6	13	y	0.52	15	14	15	14	y	0.19	7	29	7	29	y	0.19	4	17	4	17	y	0.08	2	23	2	23	y	0.30	10	23	10	23	y	0.19	5	21	5	21	y	0.23	5	17	5	17	y	0.14	3	19	3	19	y	0.40	12	18	12	18	y	ENSMUSG00000000823.17	Zfp512b	chr2	protein_coding	zinc finger protein 512B
known_NIR_10903	chr2	181488432	181493375	+	181488432	181493379	A3SS	ENSMUST00000029116.14	known	0.04	2	43	2	43	y	0.04	2	47	2	47	y	0.01	1	70	1	70	n	0.03	2	68	2	68	y	0.07	5	64	5	64	y	0.03	1	38	1	38	n	0.07	5	66	5	66	y	0.00	0	35	0	35	n	0.02	1	63	1	63	n	0.00	0	75	0	75	n	0.03	2	58	2	58	y	0.02	2	101	2	101	y	ENSMUSG00000027589.15	Pcmtd2	chr2	protein_coding	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2
known_NIR_10904	chr2	181493506	181496731	+	181493502	181496731	A5SS	ENSMUST00000029116.14	known	0.00	0	50	0	50	n	0.00	0	37	0	37	n	0.00	0	54	0	54	n	0.04	2	50	2	50	y	0.00	0	62	0	62	n	0.00	0	23	0	23	n	0.03	2	66	2	66	y	0.00	0	22	0	22	n	0.00	0	51	0	51	n	0.00	0	64	0	64	n	0.00	0	22	0	22	n	0.00	0	73	0	73	n	ENSMUSG00000027589.15	Pcmtd2	chr2	protein_coding	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2
known_NIR_10905	chr2	18191207	18191420	+	18191207	18201394	A3SS	ENSMUST00000028076.15	known	0.09	2	21	2	21	y	0.11	2	16	2	16	y	0.12	6	43	6	43	y	0.05	1	20	1	20	n	0.02	1	45	1	45	n	0.19	3	13	3	13	y	0.07	2	25	2	25	y	0.05	1	19	1	19	n	0.00	0	11	0	11	n	0.12	3	22	3	22	y	0.06	1	16	1	16	n	0.08	3	36	3	36	y	ENSMUSG00000026743.17	Mllt10	chr2	protein_coding	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10
known_NIR_10906	chr2	18236634	18298765	-	18236634;18289597	18289434;18298765	ES	ENSMUST00000091418.12	known	0.00	0	61.0	0	70;52	n	0.00	0	39.0	0	50;28	n	0.00	0	97.0	0	111;83	n	0.03	2	73.5	2	82;65	y	0.00	0	114.5	0	136;93	n	0.00	0	67.5	0	80;55	n	0.02	2	79.5	2	81;78	y	0.00	0	62.5	0	64;61	n	0.00	0	60.0	0	64;56	n	0.00	0	69.0	0	84;54	n	0.00	0	51.0	0	72;30	n	0.00	0	70.5	0	84;57	n	ENSMUSG00000026740.13	Dnajc1	chr2	protein_coding	DnaJ heat shock protein family (Hsp40) member C1
known_NIR_10907	chr2	18298855	18311784	-	18298855	18397102	A5SS	ENSMUST00000168723.2	known	1.00	59	0	59	0	n	1.00	35	0	35	0	n	1.00	72	0	72	0	n	1.00	64	0	64	0	n	1.00	87	0	87	0	n	0.97	59	2	59	2	y	1.00	70	0	70	0	n	1.00	45	0	45	0	n	1.00	51	0	51	0	n	1.00	37	0	37	0	n	1.00	35	0	35	0	n	1.00	41	0	41	0	n	ENSMUSG00000026740.13	Dnajc1	chr2	protein_coding	DnaJ heat shock protein family (Hsp40) member C1
known_NIR_10908	chr2	18313760	18321710	-	18313760;18321215	18321169;18321710	ES	ENSMUST00000091418.12	known	0.02	1	48.0	1	40;56	n	0.04	1	27.0	1	24;30	n	0.02	1	57.5	1	59;56	n	0.03	2	59.0	2	61;57	y	0.00	0	79.0	0	70;88	n	0.00	0	47.0	0	41;53	n	0.02	1	57.0	1	61;53	n	0.05	2	35.0	2	34;36	y	0.00	0	38.5	0	36;41	n	0.00	0	48.0	0	50;46	n	0.05	1	17.5	1	19;16	n	0.04	2	43.5	2	47;40	y	ENSMUSG00000026740.13	Dnajc1	chr2	protein_coding	DnaJ heat shock protein family (Hsp40) member C1
known_NIR_10909	chr2	18321811	18397102	-	18298855	18397102	A3SS	ENSMUST00000168723.2	known	1.00	47	0	47	0	n	1.00	20	0	20	0	n	1.00	73	0	73	0	n	1.00	63	0	63	0	n	1.00	80	0	80	0	n	0.97	59	2	59	2	y	1.00	54	0	54	0	n	1.00	42	0	42	0	n	1.00	42	0	42	0	n	1.00	51	0	51	0	n	1.00	23	0	23	0	n	1.00	49	0	49	0	n	ENSMUSG00000026740.13	Dnajc1	chr2	protein_coding	DnaJ heat shock protein family (Hsp40) member C1
known_NIR_10910	chr2	18677414	18678726	+	18677414	18678706	A3SS	ENSMUST00000171845.8	known	0.00	0	169	0	169	n	0.04	6	157	6	157	y	0.00	0	189	0	189	n	0.01	2	217	2	217	y	0.01	2	254	2	254	y	0.00	0	112	0	112	n	0.03	8	234	8	234	y	0.00	0	108	0	108	n	0.00	0	152	0	152	n	0.00	0	266	0	266	n	0.03	5	166	5	166	y	0.00	0	236	0	236	n	ENSMUSG00000051154.12	Commd3	chr2	protein_coding	COMM domain containing 3
known_NIR_10911	chr2	18679172	18679467	+	18679126	18679467	A5SS	ENSMUST00000171845.8	known	0.00	0	331	0	331	n	0.00	0	315	0	315	n	0.00	0	301	0	301	n	0.00	0	362	0	362	n	0.00	0	377	0	377	n	0.00	0	192	0	192	n	0.00	0	456	0	456	n	0.00	0	203	0	203	n	0.00	0	329	0	329	n	0.00	2	425	2	425	y	0.00	1	304	1	304	n	0.00	2	422	2	422	y	ENSMUSG00000051154.12	Commd3	chr2	protein_coding	COMM domain containing 3
known_NIR_10912	chr2	18682642	18686604	+	18682280	18686604	A5SS	ENSMUST00000028071.13	known	0.05	1	20	1	20	n	0.00	0	14	0	14	n	0.05	2	41	2	41	y	0.06	2	34	2	34	y	0.02	1	44	1	44	n	0.00	0	22	0	22	n	0.00	0	37	0	37	n	0.00	0	30	0	30	n	0.00	0	15	0	15	n	0.00	0	36	0	36	n	0.00	0	24	0	24	n	0.00	0	24	0	24	n	ENSMUSG00000026739.14	Bmi1	chr2	protein_coding	Bmi1 polycomb ring finger oncogene
known_NIR_10913	chr2	20742366	20748270	+	20718259	20748270	A5SS	ENSMUST00000114610.8	known	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.00	0	2	0	2	n	0.50	2	2	2	2	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.60	3	2	3	2	n	0.00	0	2	0	2	n	0.14	2	12	2	12	y	ENSMUSG00000036617.18	Etl4	chr2	protein_coding	enhancer trap locus 4
known_NIR_10914	chr2	20812184	20812713	+	20803594	20812713	A5SS	ENSMUST00000114604.9	known	1.00	5	0	5	0	n	1.00	6	0	6	0	n	1.00	10	0	10	0	n	1.00	5	0	5	0	n	1.00	13	0	13	0	n	1.00	1	0	1	0	n	0.87	13	2	13	2	y	1.00	3	0	3	0	n	0.80	4	1	4	1	n	1.00	6	0	6	0	n	1.00	4	0	4	0	n	1.00	6	0	6	0	n	ENSMUSG00000036617.18	Etl4	chr2	protein_coding	enhancer trap locus 4
known_NIR_10915	chr2	20865921	20865997	-	20865918	20865997	A3SS	ENSMUST00000154230.9	known	0.25	5	15	5	15	y	0.20	2	8	2	8	y	0.41	9	13	9	13	y	0.28	9	23	9	23	y	0.08	2	24	2	24	y	0.38	5	8	5	8	y	0.23	8	27	8	27	y	0.38	5	8	5	8	y	0.33	5	10	5	10	y	0.19	7	30	7	30	y	0.24	6	19	6	19	y	0.20	4	16	4	16	y	ENSMUSG00000036591.17	Arhgap21	chr2	protein_coding	Rho GTPase activating protein 21
known_NIR_10916	chr2	20972531	20973291	-	20972531	20973295	A5SS	ENSMUST00000114594.8	known	0.17	2	10	2	10	y	0.50	1	1	1	1	n	0.30	3	7	3	7	y	0.33	3	6	3	6	n	0.50	8	8	8	8	y	0.50	2	2	2	2	n	0.12	1	7	1	7	n	0.00	0	1	0	1	n	0.50	2	2	2	2	n	0.67	4	2	4	2	n	0.20	1	4	1	4	n	0.38	5	8	5	8	y	ENSMUSG00000036591.17	Arhgap21	chr2	protein_coding	Rho GTPase activating protein 21
known_NIR_10917	chr2	21210800	21214696	+	21210656	21214696	A5SS	ENSMUST00000054591.10	known	-	-	-	-	-	-	0.20	2	8	2	8	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.33	2	4	2	4	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	ENSMUSG00000048550.18	Thnsl1	chr2	protein_coding	threonine synthase-like 1 (bacterial)
known_NIR_10918	chr2	21214852	21217773	+	21214852	21216201	A3SS	ENSMUST00000054591.10	known	0.50	3	3	3	3	n	0.00	0	2	0	2	n	0.38	3	5	3	5	n	0.25	3	9	3	9	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.17	1	5	1	5	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.10	1	9	1	9	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	ENSMUSG00000048550.18	Thnsl1	chr2	protein_coding	threonine synthase-like 1 (bacterial)
known_NIR_10919	chr2	22836773	22843447	-	22836773	22840196	5pMXE	ENSMUST00000148294.2	known	0.15	6	34	6	34	y	0.13	4	27	4	27	y	0.18	12	54	12	54	y	0.21	12	45	12	45	y	0.17	8	40	8	40	y	0.25	9	27	9	27	y	0.15	9	51	9	51	y	0.14	4	24	4	24	y	0.21	9	34	9	34	y	0.17	10	48	10	48	y	0.27	10	27	10	27	y	0.36	17	30	17	30	y	ENSMUSG00000058835.15	Abi1	chr2	protein_coding	abl interactor 1
known_NIR_10920	chr2	22836773	22843447	-	22836773;22840282	22840196;22843447	ES	ENSMUST00000126112.8	known	0.18	6	26.5	6	34;19	y	0.14	4	24.0	4	27;21	y	0.21	12	46.5	12	54;39	y	0.25	12	36.0	12	45;27	y	0.17	8	38.0	8	40;36	y	0.26	9	26.0	9	27;25	y	0.18	9	41.0	9	51;31	y	0.14	4	25.0	4	24;26	y	0.25	9	27.0	9	34;20	y	0.18	10	46.0	10	48;44	y	0.33	10	20.0	10	27;13	y	0.36	17	30.0	17	30;30	y	ENSMUSG00000058835.15	Abi1	chr2	protein_coding	abl interactor 1
known_NIR_10921	chr2	22836773	22843447	-	22840282	22843447	3pMXE	ENSMUST00000154162.2	known	0.24	6	19	6	19	y	0.16	4	21	4	21	y	0.24	12	39	12	39	y	0.31	12	27	12	27	y	0.18	8	36	8	36	y	0.26	9	25	9	25	y	0.23	9	31	9	31	y	0.13	4	26	4	26	y	0.31	9	20	9	20	y	0.19	10	44	10	44	y	0.43	10	13	10	13	y	0.36	17	30	17	30	y	ENSMUSG00000058835.15	Abi1	chr2	protein_coding	abl interactor 1
known_NIR_10922	chr2	22836773	22847030	-	22836773	22840196	5pMXE	ENSMUST00000148294.2	known	0.00	0	34	0	34	n	0.00	0	27	0	27	n	0.05	3	54	3	54	y	0.08	4	45	4	45	y	0.05	2	40	2	40	y	0.00	0	27	0	27	n	0.07	4	51	4	51	y	0.08	2	24	2	24	y	0.03	1	34	1	34	n	0.08	4	48	4	48	y	0.04	1	27	1	27	n	0.06	2	30	2	30	y	ENSMUSG00000058835.15	Abi1	chr2	protein_coding	abl interactor 1
known_NIR_10923	chr2	22836773	22847030	-	22836773;22843620	22843447;22847030	ES	ENSMUST00000149719.8	known	0.00	0	18.0	0	6;30	n	0.00	0	12.0	0	4;20	n	0.14	3	18.0	3	12;24	y	0.16	4	20.5	4	12;29	y	0.09	2	19.5	2	8;31	y	0.00	0	16.0	0	9;23	n	0.19	4	17.0	4	9;25	y	0.15	2	11.5	2	4;19	y	0.06	1	17.0	1	9;25	n	0.15	4	22.5	4	10;35	y	0.06	1	15.5	1	10;21	n	0.10	2	17.5	2	17;18	y	ENSMUSG00000058835.15	Abi1	chr2	protein_coding	abl interactor 1
known_NIR_10924	chr2	22836773;22840282	22840196;22847030	-	22836773	22847030	cassetteExon	ENSMUST00000153931.8	known	1.00	18.0	0	34;2	0	n	1.00	13.5	0	27;0	0	n	0.90	27.0	3	54;0	3	n	0.85	22.5	4	45;0	4	n	0.91	21.5	2	40;3	2	y	1.00	13.5	0	27;0	0	n	0.86	25.5	4	51;0	4	n	0.86	12.5	2	24;1	2	n	0.94	17.0	1	34;0	1	n	0.86	24.0	4	48;0	4	n	0.93	13.5	1	27;0	1	n	0.88	15.0	2	30;0	2	n	ENSMUSG00000058835.15	Abi1	chr2	protein_coding	abl interactor 1
known_NIR_10925	chr2	22836773;22840282	22840196;22847030	-	22836773;22843620	22843447;22847030	MXE	ENSMUST00000149719.8	known	0.50	18.0	18.0	34;2	6;30	y	0.53	13.5	12.0	27;0	4;20	n	0.60	27.0	18.0	54;0	12;24	n	0.52	22.5	20.5	45;0	12;29	n	0.52	21.5	19.5	40;3	8;31	y	0.46	13.5	16.0	27;0	9;23	n	0.60	25.5	17.0	51;0	9;25	n	0.52	12.5	11.5	24;1	4;19	n	0.50	17.0	17.0	34;0	9;25	n	0.52	24.0	22.5	48;0	10;35	n	0.47	13.5	15.5	27;0	10;21	n	0.46	15.0	17.5	30;0	17;18	n	ENSMUSG00000058835.15	Abi1	chr2	protein_coding	abl interactor 1
known_NIR_10926	chr2	22836773;22843623	22843447;22847030	-	22836773	22847030	cassetteExon	ENSMUST00000153931.8	known	1.00	16.0	0	6;26	0	n	1.00	10.5	0	4;17	0	n	0.90	28.0	3	12;44	3	y	0.85	22.5	4	12;33	4	y	0.92	22.5	2	8;37	2	y	1.00	16.5	0	9;24	0	n	0.84	21.0	4	9;33	4	y	0.85	11.5	2	4;19	2	y	0.94	14.5	1	9;20	1	n	0.85	23.5	4	10;37	4	y	0.95	19.5	1	10;29	1	n	0.92	23.0	2	17;29	2	y	ENSMUSG00000058835.15	Abi1	chr2	protein_coding	abl interactor 1
known_NIR_10927	chr2	22836773;22843623	22843447;22847030	-	22836773;22840282	22840196;22847030	MXE	ENSMUST00000139038.8	known	0.47	16.0	18.0	6;26	34;2	y	0.44	10.5	13.5	4;17	27;0	n	0.51	28.0	27.0	12;44	54;0	n	0.50	22.5	22.5	12;33	45;0	n	0.51	22.5	21.5	8;37	40;3	y	0.55	16.5	13.5	9;24	27;0	n	0.45	21.0	25.5	9;33	51;0	n	0.48	11.5	12.5	4;19	24;1	n	0.46	14.5	17.0	9;20	34;0	n	0.49	23.5	24.0	10;37	48;0	n	0.59	19.5	13.5	10;29	27;0	n	0.61	23.0	15.0	17;29	30;0	n	ENSMUSG00000058835.15	Abi1	chr2	protein_coding	abl interactor 1
known_NIR_10928	chr2	22840282	22847030	-	22840282;22843620	22843447;22847030	ES	ENSMUST00000140164.8	known	0.08	2	24.5	2	19;30	y	0.00	0	20.5	0	21;20	n	0.00	0	31.5	0	39;24	n	0.00	0	28.0	0	27;29	n	0.08	3	33.5	3	36;31	y	0.00	0	24.0	0	25;23	n	0.00	0	28.0	0	31;25	n	0.04	1	22.5	1	26;19	n	0.00	0	22.5	0	20;25	n	0.00	0	39.5	0	44;35	n	0.00	0	17.0	0	13;21	n	0.00	0	24.0	0	30;18	n	ENSMUSG00000058835.15	Abi1	chr2	protein_coding	abl interactor 1
known_NIR_10929	chr2	22840282	22847030	-	22840282;22843623	22843447;22847030	ES	ENSMUST00000126112.8	known	0.08	2	22.5	2	19;26	y	0.00	0	19.0	0	21;17	n	0.00	0	41.5	0	39;44	n	0.00	0	30.0	0	27;33	n	0.08	3	36.5	3	36;37	y	0.00	0	24.5	0	25;24	n	0.00	0	32.0	0	31;33	n	0.04	1	22.5	1	26;19	n	0.00	0	20.0	0	20;20	n	0.00	0	40.5	0	44;37	n	0.00	0	21.0	0	13;29	n	0.00	0	29.5	0	30;29	n	ENSMUSG00000058835.15	Abi1	chr2	protein_coding	abl interactor 1
known_NIR_10930	chr2	22843620	22847030	-	22843623	22847030	A3SS	ENSMUST00000126112.8	known	0.54	30	26	30	26	y	0.54	20	17	20	17	y	0.35	24	44	24	44	y	0.47	29	33	29	33	y	0.46	31	37	31	37	y	0.49	23	24	23	24	y	0.43	25	33	25	33	y	0.50	19	19	19	19	y	0.56	25	20	25	20	y	0.49	35	37	35	37	y	0.42	21	29	21	29	y	0.38	18	29	18	29	y	ENSMUSG00000058835.15	Abi1	chr2	protein_coding	abl interactor 1
known_NIR_10931	chr2	22852513;22853240	22853226;22861095	-	22852513	22861095	cassetteExon	ENSMUST00000126112.8	known	0.03	1.0	35	2;0	35	n	0.02	0.5	27	0;1	27	n	0.08	5.0	56	5;5	56	y	0.06	4.0	59	4;4	59	y	0.10	7.0	64	7;7	64	y	0.04	1.5	32	0;3	32	n	0.16	10.5	56	11;10	56	y	0.09	3.5	34	3;4	34	y	0.08	4.0	49	4;4	49	y	0.04	2.5	59	1;4	59	n	0.12	5.0	38	5;5	38	y	0.07	5.0	71	4;6	71	y	ENSMUSG00000058835.15	Abi1	chr2	protein_coding	abl interactor 1
known_NIR_10932	chr2	22958298	22959463	+	22959296	22959463	5pMXE	ENSMUST00000226571.2	known	0.20	8	33	8	33	y	0.33	12	24	12	24	y	0.12	10	72	10	72	y	0.26	22	64	22	64	y	0.30	25	59	25	59	y	0.30	17	40	17	40	y	0.24	22	70	22	70	y	0.38	26	42	26	42	y	0.25	16	49	16	49	y	0.31	27	60	27	60	y	0.25	12	36	12	36	y	0.30	28	65	28	65	y	ENSMUSG00000026781.18	Acbd5	chr2	protein_coding	acyl-Coenzyme A binding domain containing 5
known_NIR_10933	chr2	22958298;22959296	22958892;22959463	+	22958298	22959463	cassetteExon	ENSMUST00000227663.2	known	0.67	16.5	8	0;33	8	n	0.50	12.0	12	0;24	12	n	0.78	36.0	10	0;72	10	n	0.60	33.5	22	3;64	22	y	0.55	30.0	25	1;59	25	n	0.55	20.5	17	1;40	17	n	0.62	36.0	22	2;70	22	y	0.45	21.0	26	0;42	26	n	0.61	25.0	16	1;49	16	n	0.53	30.0	27	0;60	27	n	0.60	18.0	12	0;36	12	n	0.54	32.5	28	0;65	28	n	ENSMUSG00000026781.18	Acbd5	chr2	protein_coding	acyl-Coenzyme A binding domain containing 5
known_NIR_10934	chr2	22959296	22959463	+	22959077	22959463	A5SS	ENSMUST00000144088.2	known	1.00	33	0	33	0	n	1.00	24	0	24	0	n	0.95	72	4	72	4	y	0.98	64	1	64	1	n	1.00	59	0	59	0	n	0.91	40	4	40	4	y	0.99	70	1	70	1	n	0.93	42	3	42	3	y	0.94	49	3	49	3	y	0.97	60	2	60	2	y	1.00	36	0	36	0	n	0.96	65	3	65	3	y	ENSMUSG00000026781.18	Acbd5	chr2	protein_coding	acyl-Coenzyme A binding domain containing 5
known_NIR_10935	chr2	22959631	22965558	+	22959631	22965502	A3SS	ENSMUST00000227663.2	known	0.00	0	147	0	147	n	0.01	1	87	1	87	n	0.00	0	187	0	187	n	0.00	0	291	0	291	n	0.00	0	301	0	301	n	0.00	0	142	0	142	n	0.01	2	229	2	229	y	0.00	0	183	0	183	n	0.00	0	151	0	151	n	0.00	0	316	0	316	n	0.00	0	156	0	156	n	0.00	1	275	1	275	n	ENSMUSG00000026781.18	Acbd5	chr2	protein_coding	acyl-Coenzyme A binding domain containing 5
known_NIR_10936	chr2	22959631	22968156	+	22959631	22965502	3pMXE	ENSMUST00000144088.2	known	0.05	7	147	7	147	y	0.04	4	87	4	87	y	0.07	14	187	14	187	y	0.07	22	291	22	291	y	0.09	29	301	29	301	y	0.03	5	142	5	142	y	0.08	20	229	20	229	y	0.05	10	183	10	183	y	0.08	13	151	13	151	y	0.08	28	316	28	316	y	0.09	16	156	16	156	y	0.05	13	275	13	275	y	ENSMUSG00000026781.18	Acbd5	chr2	protein_coding	acyl-Coenzyme A binding domain containing 5
known_NIR_10937	chr2	22959631	22968156	+	22959631;22965622	22965502;22968156	ES	ENSMUST00000227663.2	known	0.05	7	146.5	7	147;146	y	0.04	4	91.0	4	87;95	y	0.06	14	204.0	14	187;221	y	0.07	22	282.0	22	291;273	y	0.09	29	306.0	29	301;311	y	0.04	5	134.0	5	142;126	y	0.08	20	218.5	20	229;208	y	0.05	10	173.0	10	183;163	y	0.08	13	158.0	13	151;165	y	0.08	28	330.5	28	316;345	y	0.10	16	152.0	16	156;148	y	0.04	13	301.0	13	275;327	y	ENSMUSG00000026781.18	Acbd5	chr2	protein_coding	acyl-Coenzyme A binding domain containing 5
known_NIR_10938	chr2	22959631;22965622	22965558;22968156	+	22959631	22968156	cassetteExon	ENSMUST00000228891.2	known	0.91	73.0	7	0;146	7	n	0.92	48.0	4	1;95	4	n	0.89	110.5	14	0;221	14	n	0.86	136.5	22	0;273	22	n	0.84	155.5	29	0;311	29	n	0.93	63.0	5	0;126	5	n	0.84	105.0	20	2;208	20	y	0.89	81.5	10	0;163	10	n	0.86	82.5	13	0;165	13	n	0.86	172.5	28	0;345	28	n	0.82	74.0	16	0;148	16	n	0.93	164.0	13	1;327	13	n	ENSMUSG00000026781.18	Acbd5	chr2	protein_coding	acyl-Coenzyme A binding domain containing 5
known_NIR_10939	chr2	22970465	22977497	+	22970465;22970712	22970680;22977497	ES	ENSMUST00000227663.2	known	1.00	155	0.0	155	0;0	n	1.00	129	0.5	129	0;1	n	1.00	213	1.0	213	1;1	n	1.00	322	0.0	322	0;0	n	0.99	381	3.0	381	3;3	y	1.00	153	0.0	153	0;0	n	0.99	251	2.5	251	2;3	y	0.99	227	1.5	227	1;2	n	0.99	247	3.0	247	3;3	y	1.00	391	0.0	391	0;0	n	1.00	221	0.0	221	0;0	n	1.00	320	0.0	320	0;0	n	ENSMUSG00000026781.18	Acbd5	chr2	protein_coding	acyl-Coenzyme A binding domain containing 5
known_NIR_10940	chr2	22970465	22977497	+	22970712	22977497	5pMXE	ENSMUST00000227816.2	known	1.00	155	0	155	0	n	0.99	129	1	129	1	n	1.00	213	1	213	1	n	1.00	322	0	322	0	n	0.99	381	3	381	3	y	1.00	153	0	153	0	n	0.99	251	3	251	3	y	0.99	227	2	227	2	y	0.99	247	3	247	3	y	1.00	391	0	391	0	n	1.00	221	0	221	0	n	1.00	320	0	320	0	n	ENSMUSG00000026781.18	Acbd5	chr2	protein_coding	acyl-Coenzyme A binding domain containing 5
known_NIR_10941	chr2	22984529	22989574	+	22984529	22989577	A3SS	ENSMUST00000227663.2	known	0.50	120	118	120	118	y	0.56	109	86	109	86	y	0.66	211	107	211	107	y	0.57	181	137	181	137	y	0.63	303	175	303	175	y	0.60	101	66	101	66	y	0.59	220	155	220	155	y	0.60	128	87	128	87	y	0.55	180	148	180	148	y	0.59	283	198	283	198	y	0.59	176	123	176	123	y	0.54	224	190	224	190	y	ENSMUSG00000026781.18	Acbd5	chr2	protein_coding	acyl-Coenzyme A binding domain containing 5
known_NIR_10942	chr2	23427650;23431627	23431531;23433209	-	23427650	23433209	cassetteExon	ENSMUST00000132484.7	known	0.50	10.0	10	7;13	10	y	0.53	4.5	4	5;4	4	y	0.58	5.5	4	5;6	4	y	0.79	7.5	2	6;9	2	y	0.49	10.5	11	8;13	11	y	0.60	3.0	2	4;2	2	n	0.64	3.5	2	4;3	2	n	0.43	3.0	4	4;2	4	y	0.29	4.5	11	3;6	11	y	0.42	6.5	9	6;7	9	y	0.40	2.0	3	2;2	3	n	0.78	7.0	2	7;7	2	y	ENSMUSG00000026771.15	Spopl	chr2	protein_coding	speckle-type BTB/POZ protein-like
known_NIR_10943	chr2	23435286	23461855	-	23435286;23435591	23435456;23461855	ES	ENSMUST00000132484.7	known	0.00	0	6.5	0	4;9	n	0.00	0	10.0	0	12;8	n	0.00	0	9.0	0	9;9	n	0.09	1	10.5	1	10;11	n	0.00	0	6.5	0	7;6	n	0.13	1	6.5	1	7;6	n	0.00	0	15.0	0	22;8	n	0.00	0	3.0	0	2;4	n	0.00	0	6.5	0	7;6	n	0.16	2	10.5	2	14;7	y	0.00	0	7.0	0	11;3	n	0.12	2	14.5	2	19;10	y	ENSMUSG00000026771.15	Spopl	chr2	protein_coding	speckle-type BTB/POZ protein-like
known_NIR_10944	chr2	23938846	23939011	-	23938846	23939332	A5SS	ENSMUST00000051416.12	known	0.06	2	31	2	31	y	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	46	0	46	n	0.00	0	28	0	28	n	0.00	0	5	0	5	n	0.00	0	47	0	47	n	0.00	0	12	0	12	n	0.00	0	45	0	45	n	0.04	2	47	2	47	y	0.00	0	42	0	42	n	0.06	3	48	3	48	y	ENSMUSG00000026986.15	Hnmt	chr2	protein_coding	histamine N-methyltransferase
known_NIR_10945	chr2	24235380	24235532	+	24227004	24235532	A5SS	ENSMUST00000114487.9	known	1.00	3	0	3	0	n	1.00	4	0	4	0	n	0.95	105	5	105	5	y	1.00	5	0	5	0	n	1.00	33	0	33	0	n	0.93	94	7	94	7	y	1.00	21	0	21	0	n	0.99	76	1	76	1	n	1.00	2	0	2	0	n	1.00	2	0	2	0	n	1.00	3	0	3	0	n	1.00	4	0	4	0	n	ENSMUSG00000026981.16	Il1rn	chr2	protein_coding	interleukin 1 receptor antagonist
known_NIR_10946	chr2	24235583	24235955	+	24235583	24237478	A3SS	ENSMUST00000114487.9	known	0.25	2	6	2	6	n	0.31	4	9	4	9	y	0.07	75	1012	75	1012	y	0.15	2	11	2	11	y	0.14	11	69	11	69	y	0.11	65	532	65	532	y	0.07	10	125	10	125	y	0.12	42	303	42	303	y	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.05	1	18	1	18	n	ENSMUSG00000026981.16	Il1rn	chr2	protein_coding	interleukin 1 receptor antagonist
known_NIR_10947	chr2	24237566	24239427	+	24237566;24238640	24238528;24239427	ES	ENSMUST00000114487.9	known	0.00	0	5.5	0	2;9	n	0.00	0	13.0	0	14;12	n	0.01	5	933.5	5	860;1007	y	0.00	0	12.5	0	14;11	n	0.02	1	65.5	1	62;69	n	0.00	1	537.5	1	468;607	n	0.00	0	99.5	0	104;95	n	0.00	1	319.0	1	302;336	n	0.00	0	5.5	0	4;7	n	0.00	0	10.0	0	7;13	n	0.00	0	3.0	0	2;4	n	0.00	0	22.5	0	23;22	n	ENSMUSG00000026981.16	Il1rn	chr2	protein_coding	interleukin 1 receptor antagonist
known_NIR_10948	chr2	24694916	24695094	-	24694916	24695086	A5SS	ENSMUST00000147147.8	known	0.08	2	24	2	24	y	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.00	0	29	0	29	n	0.07	2	27	2	27	y	0.00	0	12	0	12	n	0.00	0	17	0	17	n	0.00	0	14	0	14	n	0.00	0	15	0	15	n	0.00	0	27	0	27	n	0.00	0	20	0	20	n	0.00	0	25	0	25	n	ENSMUSG00000036893.18	Ehmt1	chr2	protein_coding	euchromatic histone methyltransferase 1
known_NIR_10949	chr2	24705844	24714941	-	24705844	24714957	A5SS	ENSMUST00000147147.8	known	0.00	0	24	0	24	n	0.00	0	12	0	12	n	0.00	0	17	0	17	n	0.03	1	28	1	28	n	0.00	0	38	0	38	n	0.00	0	9	0	9	n	0.08	2	23	2	23	y	0.00	0	10	0	10	n	0.00	0	20	0	20	n	0.00	0	38	0	38	n	0.00	0	20	0	20	n	0.00	0	25	0	25	n	ENSMUSG00000036893.18	Ehmt1	chr2	protein_coding	euchromatic histone methyltransferase 1
known_NIR_10950	chr2	24729768	24737956	-	24729768;24730791	24730648;24737956	ES	ENSMUST00000147147.8	known	0.00	0	14.0	0	19;9	n	0.07	1	14.0	1	12;16	n	0.12	2	15.0	2	19;11	y	0.08	2	24.5	2	30;19	y	0.06	2	31.0	2	37;25	y	0.12	2	14.5	2	20;9	y	0.07	2	25.5	2	36;15	y	0.14	2	12.0	2	8;16	y	0.06	1	16.0	1	18;14	n	0.07	2	28.5	2	34;23	y	0.00	0	14.5	0	19;10	n	0.11	3	24.0	3	29;19	y	ENSMUSG00000036893.18	Ehmt1	chr2	protein_coding	euchromatic histone methyltransferase 1
known_NIR_10951	chr2	24738101	24746618	-	24738101;24742814	24742677;24746618	ES	ENSMUST00000147147.8	known	0.00	0	13.0	0	15;11	n	0.00	0	15.0	0	13;17	n	0.00	0	21.0	0	19;23	n	0.00	0	20.5	0	18;23	n	0.04	1	27.0	1	24;30	n	0.00	0	11.5	0	12;11	n	0.06	2	29.0	2	25;33	y	0.00	0	27.0	0	19;35	n	0.00	0	14.0	0	13;15	n	0.00	0	24.5	0	18;31	n	0.00	0	19.0	0	12;26	n	0.00	0	15.5	0	12;19	n	ENSMUSG00000036893.18	Ehmt1	chr2	protein_coding	euchromatic histone methyltransferase 1
known_NIR_10952	chr2	24753917	24767467	-	24753920	24767467	A3SS	ENSMUST00000114432.9	known	0.25	3	9	3	9	y	0.09	2	21	2	21	y	0.00	0	17	0	17	n	0.09	2	21	2	21	y	0.06	1	17	1	17	n	0.00	0	15	0	15	n	0.09	1	10	1	10	n	0.13	2	13	2	13	y	0.00	0	12	0	12	n	0.00	0	25	0	25	n	0.15	2	11	2	11	y	0.07	2	26	2	26	y	ENSMUSG00000036893.18	Ehmt1	chr2	protein_coding	euchromatic histone methyltransferase 1
known_NIR_10953	chr2	24753920	24767467	-	24753941	24767467	A3SS	ENSMUST00000147147.8	known	1.00	9	0	9	0	n	1.00	21	0	21	0	n	0.85	17	3	17	3	y	0.91	21	2	21	2	y	0.74	17	6	17	6	y	0.94	15	1	15	1	n	0.83	10	2	10	2	y	0.72	13	5	13	5	y	1.00	12	0	12	0	n	0.78	25	7	25	7	y	1.00	11	0	11	0	n	0.90	26	3	26	3	y	ENSMUSG00000036893.18	Ehmt1	chr2	protein_coding	euchromatic histone methyltransferase 1
known_NIR_10954	chr2	24774714	24777009	-	24774714	24777015	A5SS	ENSMUST00000147147.8	known	0.00	0	10	0	10	n	0.14	1	6	1	6	n	0.27	3	8	3	8	y	0.11	2	17	2	17	y	0.00	0	19	0	19	n	0.00	0	10	0	10	n	0.08	1	12	1	12	n	0.00	0	12	0	12	n	0.12	2	14	2	14	y	0.11	2	17	2	17	y	0.00	0	4	0	4	n	0.17	3	15	3	15	y	ENSMUSG00000036893.18	Ehmt1	chr2	protein_coding	euchromatic histone methyltransferase 1
known_NIR_10955	chr2	24777078	24809566	-	24777081	24809566	A3SS	ENSMUST00000147147.8	known	0.40	2	3	2	3	n	0.25	1	3	1	3	n	0.40	2	3	2	3	n	0.56	5	4	5	4	n	0.22	2	7	2	7	n	0.44	4	5	4	5	n	0.00	0	7	0	7	n	0.17	1	5	1	5	n	0.11	1	8	1	8	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.40	4	6	4	6	y	ENSMUSG00000036893.18	Ehmt1	chr2	protein_coding	euchromatic histone methyltransferase 1
known_NIR_10956	chr2	24816460	24816557	-	24816457	24816557	A3SS	ENSMUST00000102935.10	known	1.00	4	0	4	0	n	0.87	13	2	13	2	y	1.00	6	0	6	0	n	0.91	10	1	10	1	n	1.00	12	0	12	0	n	0.75	3	1	3	1	n	1.00	10	0	10	0	n	1.00	2	0	2	0	n	-	-	-	-	-	-	1.00	8	0	8	0	n	1.00	8	0	8	0	n	1.00	9	0	9	0	n	ENSMUSG00000026972.16	Arrdc1	chr2	protein_coding	arrestin domain containing 1
known_NIR_10957	chr2	24816460	24816595	-	24816460	24816557	A5SS	ENSMUST00000028349.14	known	0.00	0	4	0	4	n	0.13	2	13	2	13	y	0.14	1	6	1	6	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	ENSMUSG00000026972.16	Arrdc1	chr2	protein_coding	arrestin domain containing 1
known_NIR_10958	chr2	24817188	24825040	-	24817188	24817741	5pMXE	ENSMUST00000155525.8	known	0.25	3	9	3	9	y	0.25	1	3	1	3	n	0.17	1	5	1	5	n	0.17	1	5	1	5	n	0.18	2	9	2	9	y	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.50	1	1	1	1	n	ENSMUSG00000026972.16	Arrdc1	chr2	protein_coding	arrestin domain containing 1
known_NIR_10959	chr2	24817188	24825040	-	24817188;24817851	24817741;24825040	ES	ENSMUST00000102935.10	known	0.32	3	6.5	3	9;4	y	0.22	1	3.5	1	3;4	n	0.14	1	6.0	1	5;7	n	0.14	1	6.0	1	5;7	n	0.15	2	11.0	2	9;13	y	0.00	0	3.0	0	1;5	n	0.00	0	9.0	0	9;9	n	0.00	0	3.5	0	4;3	n	0.00	0	2.5	0	3;2	n	0.18	1	4.5	1	3;6	n	0.00	0	5.0	0	4;6	n	0.40	1	1.5	1	1;2	n	ENSMUSG00000026972.16	Arrdc1	chr2	protein_coding	arrestin domain containing 1
known_NIR_10960	chr2	24817188	24825040	-	24817851	24825040	A3SS&ES	ENSMUST00000142887.8	known	0.43	3	4	3	4	n	0.20	1	4	1	4	n	0.12	1	7	1	7	n	0.12	1	7	1	7	n	0.13	2	13	2	13	y	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.33	1	2	1	2	n	ENSMUSG00000026972.16	Arrdc1	chr2	protein_coding	arrestin domain containing 1
known_NIR_10961	chr2	24852822	24853035	+	24852637	24853035	A5SS	ENSMUST00000028351.9	known	0.00	0	7	0	7	n	0.27	4	11	4	11	y	0.00	0	9	0	9	n	0.11	1	8	1	8	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.11	1	8	1	8	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	ENSMUSG00000026975.11	Dph7	chr2	protein_coding	diphthamine biosynethesis 7
known_NIR_10962	chr2	24866229	24870046	+	24866325	24870046	A5SS	ENSMUST00000045295.14	known	0.57	8	6	8	6	y	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.13	2	13	2	13	y	0.00	0	3	0	3	n	0.19	5	21	5	21	y	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.11	2	16	2	16	y	0.00	0	9	0	9	n	0.27	4	11	4	11	y	ENSMUSG00000036833.17	Pnpla7	chr2	protein_coding	patatin-like phospholipase domain containing 7
known_NIR_10963	chr2	24866325;24868233	24868138;24870046	+	24866325	24870046	cassetteExon	ENSMUST00000045295.14	known	0.00	0.0	6	0;0	6	n	0.17	1.0	5	0;2	5	n	0.14	2.0	12	1;3	12	n	0.10	1.0	9	1;1	9	n	0.07	1.0	13	0;2	13	n	0.14	0.5	3	0;1	3	n	0.09	2.0	21	2;2	21	y	0.00	0.0	3	0;0	3	n	0.00	0.0	10	0;0	10	n	0.06	1.0	16	1;1	16	n	0.10	1.0	9	0;2	9	n	0.12	1.5	11	1;2	11	n	ENSMUSG00000036833.17	Pnpla7	chr2	protein_coding	patatin-like phospholipase domain containing 7
known_NIR_10964	chr2	24873661	24877126	+	24873661	24877131	A3SS	ENSMUST00000045295.14	known	0.05	1	18	1	18	n	0.00	0	16	0	16	n	0.15	2	11	2	11	y	0.11	2	17	2	17	y	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.00	0	18	0	18	n	0.00	0	11	0	11	n	0.05	1	19	1	19	n	0.00	0	27	0	27	n	0.00	0	21	0	21	n	0.00	0	27	0	27	n	ENSMUSG00000036833.17	Pnpla7	chr2	protein_coding	patatin-like phospholipase domain containing 7
known_NIR_10965	chr2	24942649;24943082	24943003;24943407	+	24942649	24943407	cassetteExon	ENSMUST00000045295.14	known	0.01	6.5	445	4;9	445	y	0.02	8.0	491	8;8	491	y	0.01	8.5	975	7;10	975	y	0.01	3.5	471	5;2	471	y	0.02	13.5	736	16;11	736	y	0.01	8.5	600	13;4	600	y	0.02	14.5	759	12;17	759	y	0.01	4.0	503	4;4	503	y	0.02	7.0	409	9;5	409	y	0.01	8.0	674	6;10	674	y	0.01	3.0	556	4;2	556	y	0.01	4.5	448	2;7	448	y	ENSMUSG00000036833.17	Pnpla7	chr2	protein_coding	patatin-like phospholipase domain containing 7
known_NIR_10966	chr2	24945071	24947113	+	24945071	24945648	3pMXE	ENSMUST00000141866.3	known	0.11	13	103	13	103	y	0.17	18	90	18	90	y	0.11	16	125	16	125	y	0.11	16	126	16	126	y	0.15	31	171	31	171	y	0.03	3	87	3	87	y	0.12	16	116	16	116	y	0.12	9	68	9	68	y	0.09	11	106	11	106	y	0.10	19	175	19	175	y	0.05	8	141	8	141	y	0.10	14	132	14	132	y	ENSMUSG00000006476.20	Nsmf	chr2	protein_coding	NMDA receptor synaptonuclear signaling and neuronal migration factor
known_NIR_10967	chr2	24945071	24947113	+	24945071;24946148	24945648;24947113	ES	ENSMUST00000100334.11	known	0.10	13	113.5	13	103;124	y	0.15	18	105.0	18	90;120	y	0.11	16	135.5	16	125;146	y	0.10	16	138.5	16	126;151	y	0.15	31	172.5	31	171;174	y	0.03	3	97.5	3	87;108	y	0.11	16	134.5	16	116;153	y	0.11	9	74.5	9	68;81	y	0.09	11	107.0	11	106;108	y	0.09	19	182.5	19	175;190	y	0.06	8	130.0	8	141;119	y	0.10	14	123.5	14	132;115	y	ENSMUSG00000006476.20	Nsmf	chr2	protein_coding	NMDA receptor synaptonuclear signaling and neuronal migration factor
known_NIR_10968	chr2	24945071	24947113	+	24946148	24947113	5pMXE	ENSMUST00000135328.2	known	0.09	13	124	13	124	y	0.13	18	120	18	120	y	0.10	16	146	16	146	y	0.10	16	151	16	151	y	0.15	31	174	31	174	y	0.03	3	108	3	108	y	0.09	16	153	16	153	y	0.10	9	81	9	81	y	0.09	11	108	11	108	y	0.09	19	190	19	190	y	0.06	8	119	8	119	y	0.11	14	115	14	115	y	ENSMUSG00000006476.20	Nsmf	chr2	protein_coding	NMDA receptor synaptonuclear signaling and neuronal migration factor
known_NIR_10969	chr2	24947188	24949033	+	24947188;24948333	24948265;24949033	ES	ENSMUST00000152122.8	known	0.12	14	105.5	14	90;121	y	0.10	10	95.0	10	76;114	y	0.04	4	104.0	4	88;120	y	0.09	13	128.5	13	115;142	y	0.08	14	168.5	14	136;201	y	0.13	9	61.0	9	46;76	y	0.09	14	136.5	14	120;153	y	0.03	2	64.5	2	52;77	y	0.10	12	106.5	12	92;121	y	0.10	17	156.0	17	137;175	y	0.12	15	114.0	15	104;124	y	0.12	14	103.0	14	85;121	y	ENSMUSG00000006476.20	Nsmf	chr2	protein_coding	NMDA receptor synaptonuclear signaling and neuronal migration factor
known_NIR_10970	chr2	24947188	24949033	+	24948333	24949033	5pMXE	ENSMUST00000140733.2	known	0.10	14	121	14	121	y	0.08	10	114	10	114	y	0.03	4	120	4	120	y	0.08	13	142	13	142	y	0.07	14	201	14	201	y	0.11	9	76	9	76	y	0.08	14	153	14	153	y	0.03	2	77	2	77	y	0.09	12	121	12	121	y	0.09	17	175	17	175	y	0.11	15	124	15	124	y	0.10	14	121	14	121	y	ENSMUSG00000006476.20	Nsmf	chr2	protein_coding	NMDA receptor synaptonuclear signaling and neuronal migration factor
known_NIR_10971	chr2	24947982	24949033	+	24947982;24948333	24948265;24949033	ES	ENSMUST00000100334.11	known	0.00	0	71.0	0	21;121	n	0.00	0	69.0	0	24;114	n	0.07	6	79.5	6	39;120	y	0.00	0	80.0	0	18;142	n	0.00	0	119.0	0	37;201	n	0.00	0	38.0	0	0;76	n	0.00	0	76.5	0	0;153	n	0.00	0	38.5	0	0;77	n	0.00	0	74.5	0	28;121	n	0.09	10	99.0	10	23;175	y	0.00	0	66.0	0	8;124	n	0.00	0	60.5	0	0;121	n	ENSMUSG00000006476.20	Nsmf	chr2	protein_coding	NMDA receptor synaptonuclear signaling and neuronal migration factor
known_NIR_10972	chr2	24947982	24949033	+	24948333	24949033	A5SS	ENSMUST00000140733.2	known	0.00	0	121	0	121	n	0.00	0	114	0	114	n	0.05	6	120	6	120	y	0.00	0	142	0	142	n	0.00	0	201	0	201	n	0.00	0	76	0	76	n	0.00	0	153	0	153	n	0.00	0	77	0	77	n	0.00	0	121	0	121	n	0.05	10	175	10	175	y	0.00	0	124	0	124	n	0.00	0	121	0	121	n	ENSMUSG00000006476.20	Nsmf	chr2	protein_coding	NMDA receptor synaptonuclear signaling and neuronal migration factor
known_NIR_10973	chr2	24949085	24950151	+	24949085	24949617	3pMXE	ENSMUST00000140733.2	known	0.03	4	146	4	146	y	0.01	2	140	2	140	y	0.02	3	156	3	156	y	0.03	5	194	5	194	y	0.03	7	211	7	211	y	0.02	2	105	2	105	y	0.03	5	183	5	183	y	0.02	2	97	2	97	y	0.03	4	139	4	139	y	0.03	6	226	6	226	y	0.03	6	167	6	167	y	0.03	5	149	5	149	y	ENSMUSG00000006476.20	Nsmf	chr2	protein_coding	NMDA receptor synaptonuclear signaling and neuronal migration factor
known_NIR_10974	chr2	24949085	24950151	+	24949085;24949706	24949617;24950151	ES	ENSMUST00000100334.11	known	0.02	4	157.5	4	146;169	y	0.01	2	153.0	2	140;166	y	0.02	3	177.5	3	156;199	y	0.02	5	204.0	5	194;214	y	0.03	7	243.5	7	211;276	y	0.02	2	105.5	2	105;106	y	0.02	5	198.0	5	183;213	y	0.02	2	96.5	2	97;96	y	0.03	4	146.0	4	139;153	y	0.03	6	233.5	6	226;241	y	0.03	6	176.5	6	167;186	y	0.03	5	173.0	5	149;197	y	ENSMUSG00000006476.20	Nsmf	chr2	protein_coding	NMDA receptor synaptonuclear signaling and neuronal migration factor
known_NIR_10975	chr2	24970563	24971823	+	24970563	24971818	A3SS	ENSMUST00000135004.2	known	0.09	8	82	8	82	y	0.08	9	98	9	98	y	0.00	0	13	0	13	n	0.00	0	112	0	112	n	0.00	0	118	0	118	n	0.00	0	32	0	32	n	0.08	9	106	9	106	y	0.00	0	59	0	59	n	0.00	0	88	0	88	n	0.00	0	127	0	127	n	0.00	0	117	0	117	n	0.00	0	76	0	76	n	ENSMUSG00000036813.12	Entpd8	chr2	protein_coding	ectonucleoside triphosphate diphosphohydrolase 8
known_NIR_10976	chr2	24970563	24971823	+	24970563	24973232	A3SS	ENSMUST00000152326.8	known	0.80	8	2	8	2	y	1.00	9	0	9	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	9	0	9	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000036813.12	Entpd8	chr2	protein_coding	ectonucleoside triphosphate diphosphohydrolase 8
known_NIR_10977	chr2	24970563	24973232	+	24970563	24971818	3pMXE	ENSMUST00000135004.2	known	0.02	2	82	2	82	y	0.00	0	98	0	98	n	0.00	0	13	0	13	n	0.02	2	112	2	112	y	0.00	0	118	0	118	n	0.03	1	32	1	32	n	0.00	0	106	0	106	n	0.00	0	59	0	59	n	0.00	0	88	0	88	n	0.02	2	127	2	127	y	0.03	3	117	3	117	y	0.01	1	76	1	76	n	ENSMUSG00000036813.12	Entpd8	chr2	protein_coding	ectonucleoside triphosphate diphosphohydrolase 8
known_NIR_10978	chr2	24972162	24972978	+	24972162	24972940	A3SS	ENSMUST00000044078.10	known	0.03	2	64	2	64	y	0.09	6	61	6	61	y	0.00	0	24	0	24	n	0.03	2	77	2	77	y	0.08	9	97	9	97	y	0.06	2	33	2	33	y	0.04	4	87	4	87	y	0.08	3	34	3	34	y	0.11	8	65	8	65	y	0.11	13	103	13	103	y	0.08	6	73	6	73	y	0.04	4	92	4	92	y	ENSMUSG00000036813.12	Entpd8	chr2	protein_coding	ectonucleoside triphosphate diphosphohydrolase 8
known_NIR_10979	chr2	24973090	24973232	+	24970563	24973232	A5SS	ENSMUST00000152326.8	known	0.98	117	2	117	2	y	1.00	135	0	135	0	n	1.00	47	0	47	0	n	0.99	160	2	160	2	y	1.00	160	0	160	0	n	0.98	53	1	53	1	n	1.00	132	0	132	0	n	1.00	66	0	66	0	n	1.00	133	0	133	0	n	0.99	194	2	194	2	y	0.98	130	3	130	3	y	0.99	179	1	179	1	n	ENSMUSG00000036813.12	Entpd8	chr2	protein_coding	ectonucleoside triphosphate diphosphohydrolase 8
known_NIR_10980	chr2	24973391	24973680	+	24973391	24973510	A3SS	ENSMUST00000044078.10	known	0.02	2	117	2	117	y	0.00	0	102	0	102	n	0.00	0	43	0	43	n	0.02	3	145	3	145	y	0.00	0	173	0	173	n	0.00	0	49	0	49	n	0.00	0	137	0	137	n	0.00	0	94	0	94	n	0.01	1	115	1	115	n	0.01	2	186	2	186	y	0.00	0	132	0	132	n	0.00	0	121	0	121	n	ENSMUSG00000036813.12	Entpd8	chr2	protein_coding	ectonucleoside triphosphate diphosphohydrolase 8
known_NIR_10981	chr2	24974100	24974738	+	24974100;24974383	24974273;24974738	ES	ENSMUST00000044078.10	known	0.01	1	161.5	1	159;164	n	0.01	3	205.0	3	201;209	y	0.00	0	50.5	0	44;57	n	0.02	5	235.0	5	243;227	y	0.00	1	225.0	1	234;216	n	0.00	0	70.5	0	73;68	n	0.00	1	222.5	1	234;211	n	0.01	1	108.5	1	103;114	n	0.00	0	170.0	0	176;164	n	0.00	0	269.5	0	269;270	n	0.01	2	217.5	2	205;230	y	0.01	1	197.0	1	192;202	n	ENSMUSG00000036813.12	Entpd8	chr2	protein_coding	ectonucleoside triphosphate diphosphohydrolase 8
known_NIR_10982	chr2	25093994	25095139	-	25093994;25094312	25094210;25095139	ES	ENSMUST00000059849.15	known	0.02	1	51.5	1	51;52	n	0.00	0	47.0	0	52;42	n	0.00	0	69.0	0	79;59	n	0.00	0	53.5	0	56;51	n	0.00	0	76.0	0	89;63	n	0.00	0	32.5	0	39;26	n	0.00	0	74.0	0	86;62	n	0.00	0	29.0	0	31;27	n	0.00	0	54.5	0	59;50	n	0.03	2	62.5	2	69;56	y	0.00	0	56.5	0	69;44	n	0.00	0	58.5	0	66;51	n	ENSMUSG00000013465.20	Nelfb	chr2	protein_coding	negative elongation factor complex member B
known_NIR_10983	chr2	25136607	25138134	-	25138066	25138134	A3SS&ES	ENSMUST00000100329.10	known	0.08	2	24	2	24	y	0.00	0	19	0	19	n	0.00	0	16	0	16	n	0.00	0	21	0	21	n	0.00	0	23	0	23	n	0.00	0	18	0	18	n	0.00	0	24	0	24	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.00	0	17	0	17	n	0.00	0	13	0	13	n	0.08	2	23	2	23	y	ENSMUSG00000006471.19	Ndor1	chr2	protein_coding	NADPH dependent diflavin oxidoreductase 1
known_NIR_10984	chr2	25144953	25145162	-	25144953	25145229	A5SS	ENSMUST00000100329.10	known	0.00	0	11	0	11	n	0.50	2	2	2	2	n	0.13	2	13	2	13	y	0.00	0	7	0	7	n	0.16	3	16	3	16	y	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.09	1	10	1	10	n	0.00	0	16	0	16	n	0.00	0	21	0	21	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	ENSMUSG00000006471.19	Ndor1	chr2	protein_coding	NADPH dependent diflavin oxidoreductase 1
known_NIR_10985	chr2	25145039	25145229	-	25144953	25145229	A3SS	ENSMUST00000100329.10	known	0.21	3	11	3	11	y	0.00	0	2	0	2	n	0.07	1	13	1	13	n	0.00	0	7	0	7	n	0.16	3	16	3	16	y	0.09	1	10	1	10	n	0.19	3	13	3	13	y	0.09	1	10	1	10	n	0.00	0	16	0	16	n	0.00	0	21	0	21	n	0.18	3	14	3	14	y	0.19	3	13	3	13	y	ENSMUSG00000006471.19	Ndor1	chr2	protein_coding	NADPH dependent diflavin oxidoreductase 1
known_NIR_10986	chr2	25162140	25162310	-	25162140	25162321	A5SS	ENSMUST00000133697.2	known	0.89	93	11	93	11	y	0.92	77	7	77	7	y	0.79	62	16	62	16	y	0.79	64	17	64	17	y	0.86	108	18	108	18	y	0.85	47	8	47	8	y	0.86	94	15	94	15	y	0.85	52	9	52	9	y	0.88	76	10	76	10	y	0.90	83	9	83	9	y	0.76	67	21	67	21	y	0.91	73	7	73	7	y	ENSMUSG00000026966.7	Ssna1	chr2	protein_coding	SS nuclear autoantigen 1
known_NIR_10987	chr2	25243528;25243738	25243620;25244245	-	25243528	25244245	cassetteExon	ENSMUST00000139108.8	known	1.00	74.5	0	95;54	0	n	0.96	80.5	3	102;59	3	y	0.98	53.5	1	63;44	1	n	0.92	76.0	7	98;54	7	y	0.98	99.0	2	124;74	2	y	0.93	25.5	2	27;24	2	y	0.97	93.0	3	105;81	3	y	1.00	29.5	0	33;26	0	n	0.97	83.0	3	90;76	3	y	1.00	83.5	0	100;67	0	n	0.97	65.5	2	78;53	2	y	0.95	73.5	4	79;68	4	y	ENSMUSG00000026958.14	Dpp7	chr2	protein_coding	dipeptidylpeptidase 7
known_NIR_10988	chr2	25245733	25245822	-	25245733	25245826	A5SS	ENSMUST00000139108.8	known	0.00	0	37	0	37	n	0.00	0	37	0	37	n	0.03	1	31	1	31	n	0.06	3	46	3	46	y	0.00	0	56	0	56	n	0.00	0	15	0	15	n	0.00	0	47	0	47	n	0.00	0	22	0	22	n	0.00	0	47	0	47	n	0.03	2	56	2	56	y	0.00	0	25	0	25	n	0.00	0	44	0	44	n	ENSMUSG00000026958.14	Dpp7	chr2	protein_coding	dipeptidylpeptidase 7
known_NIR_10989	chr2	25252149	25252662	-	25252149	25252675	A5SS	ENSMUST00000102925.4	known	0.00	0	15	0	15	n	0.00	0	30	0	30	n	0.00	0	22	0	22	n	0.00	0	14	0	14	n	0.00	0	36	0	36	n	0.14	2	12	2	12	y	0.00	0	39	0	39	n	0.00	0	14	0	14	n	0.12	2	14	2	14	y	0.00	0	36	0	36	n	0.04	1	24	1	24	n	0.00	0	24	0	24	n	ENSMUSG00000026956.16	Uap1l1	chr2	protein_coding	UDP-N-acteylglucosamine pyrophosphorylase 1-like 1
known_NIR_10990	chr2	25252860	25253324	-	25252860	25253256	A5SS	ENSMUST00000102925.4	known	0.14	4	24	4	24	y	0.08	2	22	2	22	y	0.00	0	29	0	29	n	0.00	0	15	0	15	n	0.07	3	43	3	43	y	0.00	0	12	0	12	n	0.00	0	52	0	52	n	0.06	1	15	1	15	n	0.12	2	15	2	15	y	0.06	2	34	2	34	y	0.03	1	38	1	38	n	0.09	3	29	3	29	y	ENSMUSG00000026956.16	Uap1l1	chr2	protein_coding	UDP-N-acteylglucosamine pyrophosphorylase 1-like 1
known_NIR_10991	chr2	25253869	25254113	-	25254011	25254113	A3SS	ENSMUST00000102925.4	known	0.00	0	24	0	24	n	0.00	0	29	0	29	n	0.03	1	30	1	30	n	0.00	0	30	0	30	n	0.00	0	30	0	30	n	0.00	0	24	0	24	n	0.00	0	47	0	47	n	0.00	0	24	0	24	n	0.00	0	19	0	19	n	0.00	0	37	0	37	n	0.00	0	24	0	24	n	0.10	2	18	2	18	y	ENSMUSG00000026956.16	Uap1l1	chr2	protein_coding	UDP-N-acteylglucosamine pyrophosphorylase 1-like 1
known_NIR_10992	chr2	25296373	25296771	+	25296373	25297608	A3SS	ENSMUST00000132287.8	known	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.02	1	47	1	47	n	0.00	0	18	0	18	n	0.00	0	38	0	38	n	0.00	0	27	0	27	n	0.03	1	36	1	36	n	0.00	0	28	0	28	n	0.15	2	11	2	11	y	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	ENSMUSG00000015094.17	Npdc1	chr2	protein_coding	neural proliferation, differentiation and control 1
known_NIR_10993	chr2	25296373	25297475	+	25296373	25297608	A3SS	ENSMUST00000132287.8	known	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.00	0	47	0	47	n	0.00	0	18	0	18	n	0.00	0	38	0	38	n	0.07	2	27	2	27	y	0.00	0	36	0	36	n	0.00	0	28	0	28	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	ENSMUSG00000015094.17	Npdc1	chr2	protein_coding	neural proliferation, differentiation and control 1
known_NIR_10994	chr2	25297748	25297856	+	25297748	25297853	A3SS	ENSMUST00000132287.8	known	0.00	0	21	0	21	n	0.40	6	9	6	9	y	0.09	5	51	5	51	y	0.06	1	17	1	17	n	0.03	2	60	2	60	y	0.09	3	30	3	30	y	0.00	0	47	0	47	n	0.00	0	30	0	30	n	0.00	0	6	0	6	n	0.00	0	18	0	18	n	0.08	1	11	1	11	n	0.00	0	13	0	13	n	ENSMUSG00000015094.17	Npdc1	chr2	protein_coding	neural proliferation, differentiation and control 1
known_NIR_10995	chr2	25332066	25332203	+	25332123	25332203	A5SS	ENSMUST00000102919.4	known	0.21	6	22	6	22	y	0.00	0	12	0	12	n	0.20	2	8	2	8	y	0.00	0	27	0	27	n	0.08	2	22	2	22	y	0.00	0	6	0	6	n	0.05	1	19	1	19	n	0.00	0	13	0	13	n	0.09	3	29	3	29	y	0.07	2	28	2	28	y	0.07	3	37	3	37	y	0.06	3	45	3	45	y	ENSMUSG00000026944.19	Abca2	chr2	protein_coding	ATP-binding cassette, sub-family A (ABC1), member 2
known_NIR_10996	chr2	25345660	25350021	-	25349871	25350021	3pMXE	ENSMUST00000141613.8	known	0.00	0	52	0	52	n	0.00	0	68	0	68	n	0.00	0	25	0	25	n	0.06	2	32	2	32	y	0.00	0	31	0	31	n	0.00	0	18	0	18	n	0.03	1	38	1	38	n	0.00	0	11	0	11	n	0.02	2	85	2	85	y	0.03	2	63	2	63	y	0.00	0	106	0	106	n	0.00	0	46	0	46	n	ENSMUSG00000047617.12	Paxx	chr2	protein_coding	non-homologous end joining factor
known_NIR_10997	chr2	25345660;25349871	25349787;25350021	-	25345660	25350021	cassetteExon	ENSMUST00000132596.8	known	1.00	26.5	0	1;52	0	n	1.00	34.0	0	0;68	0	n	1.00	13.0	0	1;25	0	n	0.89	16.5	2	1;32	2	n	1.00	15.5	0	0;31	0	n	1.00	9.0	0	0;18	0	n	0.95	19.5	1	1;38	1	n	1.00	5.5	0	0;11	0	n	0.96	44.0	2	3;85	2	y	0.94	31.5	2	0;63	2	n	1.00	54.5	0	3;106	0	n	1.00	23.0	0	0;46	0	n	ENSMUSG00000047617.12	Paxx	chr2	protein_coding	non-homologous end joining factor
known_NIR_10998	chr2	25345660;25349927	25349787;25350021	-	25345660	25350021	cassetteExon	ENSMUST00000132596.8	known	1.00	4.5	0	1;8	0	n	1.00	4.0	0	0;8	0	n	1.00	5.5	0	1;10	0	n	0.73	5.5	2	1;10	2	n	1.00	4.0	0	0;8	0	n	1.00	1.0	0	0;2	0	n	0.80	4.0	1	1;7	1	n	1.00	1.0	0	0;2	0	n	0.82	9.0	2	3;15	2	y	0.76	6.5	2	0;13	2	n	1.00	12.0	0	3;21	0	n	1.00	4.0	0	0;8	0	n	ENSMUSG00000047617.12	Paxx	chr2	protein_coding	non-homologous end joining factor
known_NIR_10999	chr2	25349713	25349787	-	25345660	25349787	A3SS	ENSMUST00000133919.8	known	0.97	39	1	39	1	n	1.00	88	0	88	0	n	0.97	33	1	33	1	n	0.97	31	1	31	1	n	1.00	46	0	46	0	n	1.00	12	0	12	0	n	0.98	40	1	40	1	n	1.00	15	0	15	0	n	0.96	70	3	70	3	y	1.00	66	0	66	0	n	0.97	101	3	101	3	y	1.00	48	0	48	0	n	ENSMUSG00000047617.12	Paxx	chr2	protein_coding	non-homologous end joining factor
known_NIR_11000	chr2	25349871	25350021	-	25349927	25350021	A3SS	ENSMUST00000133919.8	known	0.87	52	8	52	8	y	0.89	68	8	68	8	y	0.71	25	10	25	10	y	0.76	32	10	32	10	y	0.79	31	8	31	8	y	0.90	18	2	18	2	y	0.84	38	7	38	7	y	0.85	11	2	11	2	y	0.85	85	15	85	15	y	0.83	63	13	63	13	y	0.83	106	21	106	21	y	0.85	46	8	46	8	y	ENSMUSG00000047617.12	Paxx	chr2	protein_coding	non-homologous end joining factor
known_NIR_11001	chr2	25349871	25350179	-	25349871	25350021	A5SS	ENSMUST00000130130.8	known	0.00	0	52	0	52	n	0.00	0	68	0	68	n	0.00	0	25	0	25	n	0.00	0	32	0	32	n	0.00	0	31	0	31	n	0.00	0	18	0	18	n	0.00	0	38	0	38	n	0.00	0	11	0	11	n	0.00	0	85	0	85	n	0.00	0	63	0	63	n	0.05	6	106	6	106	y	0.00	0	46	0	46	n	ENSMUSG00000047617.12	Paxx	chr2	protein_coding	non-homologous end joining factor
known_NIR_11002	chr2	25349871	25350179	-	25349871;25350086	25350021;25350179	ES	ENSMUST00000114261.9	known	0.00	0	49.0	0	52;46	n	0.00	0	61.0	0	68;54	n	0.00	0	28.5	0	25;32	n	0.00	0	32.0	0	32;32	n	0.00	0	39.0	0	31;47	n	0.00	0	19.0	0	18;20	n	0.00	0	33.0	0	38;28	n	0.00	0	16.0	0	11;21	n	0.00	0	71.0	0	85;57	n	0.00	0	56.0	0	63;49	n	0.06	6	103.0	6	106;100	y	0.00	0	41.5	0	46;37	n	ENSMUSG00000047617.12	Paxx	chr2	protein_coding	non-homologous end joining factor
known_NIR_11003	chr2	25349871	25350179	-	25350086	25350179	A3SS&ES	ENSMUST00000133919.8	known	0.00	0	46	0	46	n	0.00	0	54	0	54	n	0.00	0	32	0	32	n	0.00	0	32	0	32	n	0.00	0	47	0	47	n	0.00	0	20	0	20	n	0.00	0	28	0	28	n	0.00	0	21	0	21	n	0.00	0	57	0	57	n	0.00	0	49	0	49	n	0.06	6	100	6	100	y	0.00	0	37	0	37	n	ENSMUSG00000047617.12	Paxx	chr2	protein_coding	non-homologous end joining factor
known_NIR_11004	chr2	25350506	25350799	-	25350506	25350667	A5SS	ENSMUST00000133919.8	known	0.05	2	39	2	39	y	0.06	2	30	2	30	y	0.08	2	22	2	22	y	0.17	4	20	4	20	y	0.07	3	41	3	41	y	0.00	0	24	0	24	n	0.04	1	27	1	27	n	0.45	10	12	10	12	y	0.12	6	43	6	43	y	0.08	4	44	4	44	y	0.17	14	69	14	69	y	0.14	6	38	6	38	y	ENSMUSG00000047617.12	Paxx	chr2	protein_coding	non-homologous end joining factor
known_NIR_11005	chr2	25350506	25350799	-	25350506;25350727	25350667;25350799	ES	ENSMUST00000114261.9	known	0.07	2	27.0	2	39;15	y	0.10	2	18.5	2	30;7	y	0.13	2	13.5	2	22;5	y	0.24	4	12.5	4	20;5	y	0.12	3	23.0	3	41;5	y	0.00	0	14.0	0	24;4	n	0.05	1	18.5	1	27;10	n	0.59	10	7.0	10	12;2	y	0.17	6	30.0	6	43;17	y	0.12	4	29.0	4	44;14	y	0.23	14	48.0	14	69;27	y	0.21	6	23.0	6	38;8	y	ENSMUSG00000047617.12	Paxx	chr2	protein_coding	non-homologous end joining factor
known_NIR_11006	chr2	25350506	25350799	-	25350727	25350799	A3SS	ENSMUST00000123986.2	known	0.12	2	15	2	15	y	0.22	2	7	2	7	n	0.29	2	5	2	5	n	0.44	4	5	4	5	n	0.38	3	5	3	5	n	0.00	0	4	0	4	n	0.09	1	10	1	10	n	0.83	10	2	10	2	y	0.26	6	17	6	17	y	0.22	4	14	4	14	y	0.34	14	27	14	27	y	0.43	6	8	6	8	y	ENSMUSG00000047617.12	Paxx	chr2	protein_coding	non-homologous end joining factor
known_NIR_11007	chr2	25389127	25389601	-	25389127	25389410	5pMXE	ENSMUST00000150580.2	known	0.00	0	1340	0	1340	n	0.00	2	1528	2	1528	y	0.00	0	854	0	854	n	0.00	0	1301	0	1301	n	0.00	2	1451	2	1451	y	0.00	0	645	0	645	n	0.00	0	1814	0	1814	n	0.00	0	724	0	724	n	0.00	2	1474	2	1474	y	0.00	0	2116	0	2116	n	0.00	0	2000	0	2000	n	0.00	3	1566	3	1566	y	ENSMUSG00000015083.12	C8g	chr2	protein_coding	complement component 8, gamma polypeptide
known_NIR_11008	chr2	25389127	25389601	-	25389127;25389517	25389410;25389601	ES	ENSMUST00000040042.11	known	0.00	0	1504.0	0	1340;1668	n	0.00	2	1638.5	2	1528;1749	y	0.00	0	967.0	0	854;1080	n	0.00	0	1516.5	0	1301;1732	n	0.00	2	1800.0	2	1451;2149	y	0.00	0	733.5	0	645;822	n	0.00	0	2007.5	0	1814;2201	n	0.00	0	825.5	0	724;927	n	0.00	2	1688.5	2	1474;1903	y	0.00	0	2433.5	0	2116;2751	n	0.00	0	2259.5	0	2000;2519	n	0.00	3	1759.5	3	1566;1953	y	ENSMUSG00000015083.12	C8g	chr2	protein_coding	complement component 8, gamma polypeptide
known_NIR_11009	chr2	25389127;25389517	25389410;25389851	-	25389127;25389671	25389601;25389851	MXE	ENSMUST00000153139.8	known	0.41	670.0	954.5	1340;0	0;1909	n	0.45	764.0	952.5	1528;0	2;1903	n	0.40	427.0	630.5	854;0	0;1261	n	0.40	650.5	982.0	1301;0	0;1964	n	0.39	726.5	1129.5	1451;2	2;2257	y	0.42	322.5	454.0	645;0	0;908	n	0.42	907.0	1230.0	1814;0	0;2460	n	0.41	362.0	515.5	724;0	0;1031	n	0.41	737.0	1063.5	1474;0	2;2125	n	0.41	1058.0	1515.0	2116;0	0;3030	n	0.42	1001.0	1391.5	2000;2	0;2783	n	0.43	783.0	1031.0	1566;0	3;2059	n	ENSMUSG00000015083.12	C8g	chr2	protein_coding	complement component 8, gamma polypeptide
known_NIR_11010	chr2	25389517	25389851	-	25389517;25389671	25389601;25389851	ES	ENSMUST00000040042.11	known	0.00	0	1788.5	0	1668;1909	n	0.00	0	1826.0	0	1749;1903	n	0.00	0	1170.5	0	1080;1261	n	0.00	0	1848.0	0	1732;1964	n	0.00	2	2203.0	2	2149;2257	y	0.00	0	865.0	0	822;908	n	0.00	0	2330.5	0	2201;2460	n	0.00	0	979.0	0	927;1031	n	0.00	0	2014.0	0	1903;2125	n	0.00	0	2890.5	0	2751;3030	n	0.00	2	2651.0	2	2519;2783	y	0.00	0	2006.0	0	1953;2059	n	ENSMUSG00000015083.12	C8g	chr2	protein_coding	complement component 8, gamma polypeptide
known_NIR_11011	chr2	25390898	25392044	+	25390898	25391948	A3SS	ENSMUST00000015239.10	known	0.00	0	33	0	33	n	0.00	0	19	0	19	n	0.02	1	53	1	53	n	0.00	0	36	0	36	n	0.05	2	40	2	40	y	0.00	0	42	0	42	n	0.00	0	34	0	34	n	0.00	0	30	0	30	n	0.00	0	16	0	16	n	0.04	2	47	2	47	y	0.03	1	29	1	29	n	0.00	0	37	0	37	n	ENSMUSG00000015095.13	Fbxw5	chr2	protein_coding	F-box and WD-40 domain protein 5
known_NIR_11012	chr2	25392163	25392883	+	25392163	25392413	A3SS&ES	ENSMUST00000142004.8	known	0.00	0	61	0	61	n	0.05	3	60	3	60	y	0.04	6	141	6	141	y	0.04	3	82	3	82	y	0.03	4	125	4	125	y	0.03	2	72	2	72	y	0.00	0	115	0	115	n	0.04	3	77	3	77	y	0.01	1	67	1	67	n	0.02	3	139	3	139	y	0.01	1	107	1	107	n	0.04	4	106	4	106	y	ENSMUSG00000015095.13	Fbxw5	chr2	protein_coding	F-box and WD-40 domain protein 5
known_NIR_11013	chr2	25392163	25392883	+	25392163;25392570	25392413;25392883	ES	ENSMUST00000015239.10	known	0.00	0	75.0	0	61;89	n	0.04	3	69.5	3	60;79	y	0.05	6	122.0	6	141;103	y	0.03	3	83.5	3	82;85	y	0.03	4	127.0	4	125;129	y	0.03	2	72.0	2	72;72	y	0.00	0	111.0	0	115;107	n	0.04	3	68.0	3	77;59	y	0.01	1	66.5	1	67;66	n	0.02	3	133.5	3	139;128	y	0.01	1	86.5	1	107;66	n	0.04	4	103.5	4	106;101	y	ENSMUSG00000015095.13	Fbxw5	chr2	protein_coding	F-box and WD-40 domain protein 5
known_NIR_11014	chr2	25392570	25392869	+	25392570	25392883	A3SS	ENSMUST00000015239.10	known	0.08	8	89	8	89	y	0.10	9	79	9	79	y	0.10	11	103	11	103	y	0.09	8	85	8	85	y	0.10	15	129	15	129	y	0.14	12	72	12	72	y	0.10	12	107	12	107	y	0.09	6	59	6	59	y	0.13	10	66	10	66	y	0.06	8	128	8	128	y	0.12	9	66	9	66	y	0.08	9	101	9	101	y	ENSMUSG00000015095.13	Fbxw5	chr2	protein_coding	F-box and WD-40 domain protein 5
known_NIR_11015	chr2	25393057	25393449	+	25393057	25393137	3pMXE	ENSMUST00000142004.8	known	0.03	3	92	3	92	y	0.00	0	85	0	85	n	0.01	2	148	2	148	y	0.01	1	106	1	106	n	0.00	0	133	0	133	n	0.03	3	85	3	85	y	0.00	0	139	0	139	n	0.00	0	80	0	80	n	0.00	0	70	0	70	n	0.00	0	144	0	144	n	0.00	0	108	0	108	n	0.00	0	102	0	102	n	ENSMUSG00000015095.13	Fbxw5	chr2	protein_coding	F-box and WD-40 domain protein 5
known_NIR_11016	chr2	25393057	25393449	+	25393057;25393285	25393137;25393449	ES	ENSMUST00000015239.10	known	0.03	3	97.0	3	92;102	y	0.00	0	78.5	0	85;72	n	0.01	2	145.5	2	148;143	y	0.01	1	111.0	1	106;116	n	0.00	0	128.5	0	133;124	n	0.04	3	80.0	3	85;75	y	0.00	0	125.0	0	139;111	n	0.00	0	79.5	0	80;79	n	0.00	0	78.0	0	70;86	n	0.00	0	131.5	0	144;119	n	0.00	0	100.5	0	108;93	n	0.00	0	104.0	0	102;106	n	ENSMUSG00000015095.13	Fbxw5	chr2	protein_coding	F-box and WD-40 domain protein 5
known_NIR_11017	chr2	25393057	25393449	+	25393285	25393449	A5SS	ENSMUST00000135456.2	known	0.03	3	102	3	102	y	0.00	0	72	0	72	n	0.01	2	143	2	143	y	0.01	1	116	1	116	n	0.00	0	124	0	124	n	0.04	3	75	3	75	y	0.00	0	111	0	111	n	0.00	0	79	0	79	n	0.00	0	86	0	86	n	0.00	0	119	0	119	n	0.00	0	93	0	93	n	0.00	0	106	0	106	n	ENSMUSG00000015095.13	Fbxw5	chr2	protein_coding	F-box and WD-40 domain protein 5
known_NIR_11018	chr2	25393653	25394192	+	25393878	25394192	A5SS	ENSMUST00000015239.10	known	0.04	3	82	3	82	y	0.00	0	110	0	110	n	0.00	0	157	0	157	n	0.00	0	83	0	83	n	0.00	0	169	0	169	n	0.00	0	77	0	77	n	0.05	5	106	5	106	y	0.04	4	90	4	90	y	0.00	0	102	0	102	n	0.00	0	131	0	131	n	0.01	2	136	2	136	y	0.01	1	93	1	93	n	ENSMUSG00000015095.13	Fbxw5	chr2	protein_coding	F-box and WD-40 domain protein 5
known_NIR_11019	chr2	25427161	25428857	-	25427161	25428878	A5SS	ENSMUST00000028311.13	known	0.35	6	11	6	11	y	0.00	0	10	0	10	n	0.21	5	19	5	19	y	0.18	4	18	4	18	y	0.00	0	17	0	17	n	0.14	2	12	2	12	y	0.15	2	11	2	11	y	0.11	2	16	2	16	y	0.22	4	14	4	14	y	0.00	0	18	0	18	n	0.15	2	11	2	11	y	0.20	4	16	4	16	y	ENSMUSG00000026942.14	Traf2	chr2	protein_coding	TNF receptor-associated factor 2
known_NIR_11020	chr2	25448178	25450163	+	25448041	25450163	A5SS	ENSMUST00000015236.4	known	0.00	0	1008	0	1008	n	0.00	0	1130	0	1130	n	0.00	0	1181	0	1181	n	0.00	0	1130	0	1130	n	0.00	0	1183	0	1183	n	0.01	7	699	7	699	y	0.00	0	1112	0	1112	n	0.00	0	664	0	664	n	0.00	0	837	0	837	n	0.00	0	1357	0	1357	n	0.00	0	1179	0	1179	n	0.00	0	1066	0	1066	n	ENSMUSG00000015092.10	Edf1	chr2	protein_coding	endothelial differentiation-related factor 1
known_NIR_11021	chr2	25464461	25464695	-	25464324	25464695	A3SS	ENSMUST00000142811.2	known	0.00	0	146	0	146	n	0.00	0	135	0	135	n	0.08	9	100	9	100	y	0.00	0	127	0	127	n	0.07	10	141	10	141	y	0.08	6	71	6	71	y	0.04	9	195	9	195	y	0.00	0	85	0	85	n	0.08	10	114	10	114	y	0.08	18	195	18	195	y	0.04	6	155	6	155	y	0.04	6	147	6	147	y	ENSMUSG00000026941.17	Mamdc4	chr2	protein_coding	MAM domain containing 4
known_NIR_11022	chr2	25486536	25488140	-	25486536	25488157	A5SS	ENSMUST00000058137.9	known	0.03	1	33	1	33	n	0.08	2	22	2	22	y	0.10	4	36	4	36	y	0.03	1	34	1	34	n	0.08	3	34	3	34	y	0.14	2	12	2	12	y	0.04	1	25	1	25	n	0.08	1	11	1	11	n	0.00	0	26	0	26	n	0.13	4	27	4	27	y	0.06	2	31	2	31	y	0.05	1	21	1	21	n	ENSMUSG00000015087.15	Rabl6	chr2	protein_coding	RAB, member RAS oncogene family-like 6
known_NIR_11023	chr2	25488204	25491363	-	25488209	25491363	A3SS	ENSMUST00000058137.9	known	0.00	0	45	0	45	n	0.02	1	40	1	40	n	0.07	2	28	2	28	y	0.00	0	38	0	38	n	0.00	0	41	0	41	n	0.00	0	16	0	16	n	0.00	0	35	0	35	n	0.07	1	14	1	14	n	0.03	1	33	1	33	n	0.00	0	37	0	37	n	0.00	0	38	0	38	n	0.00	0	42	0	42	n	ENSMUSG00000015087.15	Rabl6	chr2	protein_coding	RAB, member RAS oncogene family-like 6
known_NIR_11024	chr2	25492562	25498125	-	25492567	25498125	A3SS	ENSMUST00000058137.9	known	0.08	1	11	1	11	n	0.00	0	15	0	15	n	0.09	2	20	2	20	y	0.00	0	15	0	15	n	0.08	2	24	2	24	y	0.00	0	3	0	3	n	0.00	0	25	0	25	n	0.09	1	10	1	10	n	0.00	0	11	0	11	n	0.00	0	26	0	26	n	0.00	0	7	0	7	n	0.03	1	30	1	30	n	ENSMUSG00000015087.15	Rabl6	chr2	protein_coding	RAB, member RAS oncogene family-like 6
known_NIR_11025	chr2	25511185	25511373	-	25511185	25511387	A5SS	ENSMUST00000142087.2	known	0.11	8	65	8	65	y	0.11	10	77	10	77	y	0.15	9	51	9	51	y	0.10	7	65	7	65	y	0.17	16	77	16	77	y	0.07	2	28	2	28	y	0.14	14	85	14	85	y	0.25	15	44	15	44	y	0.11	7	58	7	58	y	0.13	11	74	11	74	y	0.24	22	69	22	69	y	0.11	10	81	10	81	y	ENSMUSG00000026939.13	Tmem141	chr2	protein_coding	transmembrane protein 141
known_NIR_11026	chr2	25511185	25511387	-	25511179	25511387	A3SS	ENSMUST00000028308.11	known	1.00	65	0	65	0	n	1.00	77	0	77	0	n	1.00	51	0	51	0	n	1.00	65	0	65	0	n	1.00	77	0	77	0	n	1.00	28	0	28	0	n	1.00	85	0	85	0	n	1.00	44	0	44	0	n	1.00	58	0	58	0	n	1.00	74	0	74	0	n	0.97	69	2	69	2	y	0.98	81	2	81	2	y	ENSMUSG00000026939.13	Tmem141	chr2	protein_coding	transmembrane protein 141
known_NIR_11027	chr2	25511540	25511620	-	25511470	25511620	A3SS	ENSMUST00000028308.11	known	0.01	1	85	1	85	n	0.03	2	78	2	78	y	0.09	5	50	5	50	y	0.08	5	57	5	57	y	0.12	9	69	9	69	y	0.00	0	48	0	48	n	0.00	0	99	0	99	n	0.07	3	43	3	43	y	0.02	1	49	1	49	n	0.04	4	88	4	88	y	0.03	3	92	3	92	y	0.02	2	85	2	85	y	ENSMUSG00000026939.13	Tmem141	chr2	protein_coding	transmembrane protein 141
known_NIR_11028	chr2	25515575	25516100	-	25515575	25516024	A5SS	ENSMUST00000028307.9	known	0.00	0	75	0	75	n	0.00	0	79	0	79	n	0.01	1	101	1	101	n	0.00	0	62	0	62	n	0.03	3	109	3	109	y	0.00	0	55	0	55	n	0.06	6	94	6	94	y	0.08	5	56	5	56	y	0.01	1	78	1	78	n	0.01	1	73	1	73	n	0.02	2	85	2	85	y	0.00	0	58	0	58	n	ENSMUSG00000026938.11	Fcna	chr2	protein_coding	ficolin A
known_NIR_11029	chr2	25825576	25825862	-	25825573	25825862	A3SS	ENSMUST00000114167.9	known	0.94	32	2	32	2	y	1.00	11	0	11	0	n	0.95	18	1	18	1	n	0.76	13	4	13	4	y	0.76	25	8	25	8	y	0.62	5	3	5	3	n	1.00	8	0	8	0	n	0.90	18	2	18	2	y	0.67	8	4	8	4	y	0.86	19	3	19	3	y	0.86	12	2	12	2	y	0.75	15	5	15	5	y	ENSMUSG00000026933.18	Camsap1	chr2	protein_coding	calmodulin regulated spectrin-associated protein 1
known_NIR_11030	chr2	25835285	25846259	-	25835285;25842831	25842690;25846259	ES	ENSMUST00000114167.9	known	0.00	0	5.0	0	3;7	n	0.00	0	2.5	0	2;3	n	0.21	2	7.5	2	8;7	y	0.00	0	4.5	0	3;6	n	0.31	2	4.5	2	5;4	y	0.00	0	4.0	0	7;1	n	0.00	0	9.0	0	10;8	n	0.10	1	9.0	1	8;10	n	0.00	0	3.0	0	3;3	n	0.09	1	10.5	1	9;12	n	0.00	0	1.0	0	1;1	n	0.13	1	6.5	1	5;8	n	ENSMUSG00000026933.18	Camsap1	chr2	protein_coding	calmodulin regulated spectrin-associated protein 1
known_NIR_11031	chr2	25889079	25896539	-	25895476	25896539	3pMXE	ENSMUST00000146363.8	known	0.08	6	66	6	66	y	0.22	15	52	15	52	y	0.05	3	52	3	52	y	0.06	4	61	4	61	y	0.03	2	62	2	62	y	0.06	2	29	2	29	y	0.13	13	89	13	89	y	0.23	9	31	9	31	y	0.07	4	53	4	53	y	0.10	8	71	8	71	y	0.10	7	63	7	63	y	0.12	8	60	8	60	y	ENSMUSG00000036352.17	Ubac1	chr2	protein_coding	ubiquitin associated domain containing 1
known_NIR_11032	chr2	25889079;25895476	25895338;25896539	-	25889079	25896539	cassetteExon	ENSMUST00000123275.8	known	0.91	61.0	6	56;66	6	y	0.78	53.5	15	55;52	15	y	0.95	53.5	3	55;52	3	y	0.93	55.0	4	49;61	4	y	0.97	63.5	2	65;62	2	y	0.94	34.0	2	39;29	2	y	0.87	84.5	13	80;89	13	y	0.78	32.0	9	33;31	9	y	0.93	56.0	4	59;53	4	y	0.89	68.0	8	65;71	8	y	0.91	68.0	7	73;63	7	y	0.89	63.5	8	67;60	8	y	ENSMUSG00000036352.17	Ubac1	chr2	protein_coding	ubiquitin associated domain containing 1
known_NIR_11033	chr2	25897965	25899173	-	25897965;25898981	25898873;25899173	ES	ENSMUST00000036509.14	known	0.00	0	37.5	0	29;46	n	0.00	0	44.5	0	46;43	n	0.00	0	43.0	0	49;37	n	0.00	0	60.0	0	62;58	n	0.00	0	65.5	0	67;64	n	0.00	0	28.5	0	38;19	n	0.00	0	78.5	0	81;76	n	0.00	0	35.5	0	41;30	n	0.00	0	49.0	0	48;50	n	0.06	4	64.0	4	60;68	y	0.00	0	47.0	0	48;46	n	0.03	2	64.5	2	67;62	y	ENSMUSG00000036352.17	Ubac1	chr2	protein_coding	ubiquitin associated domain containing 1
known_NIR_11034	chr2	25897965	25899173	-	25898981	25899173	3pMXE	ENSMUST00000148725.2	known	0.00	0	46	0	46	n	0.00	0	43	0	43	n	0.00	0	37	0	37	n	0.00	0	58	0	58	n	0.00	0	64	0	64	n	0.00	0	19	0	19	n	0.00	0	76	0	76	n	0.00	0	30	0	30	n	0.00	0	50	0	50	n	0.06	4	68	4	68	y	0.00	0	46	0	46	n	0.03	2	62	2	62	y	ENSMUSG00000036352.17	Ubac1	chr2	protein_coding	ubiquitin associated domain containing 1
known_NIR_11035	chr2	26240570;26241486	26241347;26241785	-	26240570	26241785	cassetteExon	ENSMUST00000125848.2	known	0.91	111.0	11	123;99	11	y	0.91	103.5	10	122;85	10	y	0.90	87.5	10	102;73	10	y	0.88	84.0	12	88;80	12	y	0.85	117.0	20	145;89	20	y	0.97	72.5	2	81;64	2	y	0.94	140.5	9	159;122	9	y	0.97	73.5	2	99;48	2	y	0.83	80.5	16	108;53	16	y	0.90	113.0	12	142;84	12	y	0.95	124.0	6	133;115	6	y	0.88	90.5	12	106;75	12	y	ENSMUSG00000075467.5	Dnlz	chr2	protein_coding	DNL-type zinc finger
known_NIR_11036	chr2	26253804	26254632	-	26253780	26254632	A3SS	ENSMUST00000114115.9	known	0.47	8	9	8	9	y	0.26	5	14	5	14	y	0.37	11	19	11	19	y	0.56	5	4	5	4	n	0.20	3	12	3	12	y	0.30	6	14	6	14	y	0.29	5	12	5	12	y	0.45	5	6	5	6	y	0.00	0	7	0	7	n	0.38	8	13	8	13	y	0.33	5	10	5	10	y	0.39	7	11	7	11	y	ENSMUSG00000036281.14	Snapc4	chr2	protein_coding	small nuclear RNA activating complex, polypeptide 4
known_NIR_11037	chr2	26260892	26262771	-	26260892	26262743	A5SS	ENSMUST00000114115.9	known	0.30	3	7	3	7	y	0.29	2	5	2	5	n	0.31	4	9	4	9	y	0.50	6	6	6	6	y	0.25	4	12	4	12	y	0.50	5	5	5	5	y	0.12	1	7	1	7	n	0.40	4	6	4	6	y	0.40	2	3	2	3	n	0.27	3	8	3	8	y	0.30	3	7	3	7	y	0.55	6	5	6	5	y	ENSMUSG00000036281.14	Snapc4	chr2	protein_coding	small nuclear RNA activating complex, polypeptide 4
known_NIR_11038	chr2	26277101;26277518	26277210;26277610	+	26277101	26277610	cassetteExon	ENSMUST00000152375.2	known	0.00	0.0	3	0;0	3	n	0.00	0.0	4	0;0	4	n	0.57	4.0	3	5;3	3	y	1.00	0.5	0	0;1	0	n	-	-	-	-	-	-	0.00	0.0	1	0;0	1	n	0.71	2.5	1	4;1	1	n	0.20	0.5	2	1;0	2	n	1.00	1.0	0	2;0	0	n	0.00	0.0	1	0;0	1	n	-	-	-	-	-	-	0.27	1.5	4	3;0	4	n	ENSMUSG00000085767.2	Gm13563	chr2	lncRNA	predicted gene 13563
known_NIR_11039	chr2	26277683	26278598	-	26277683	26278504	A5SS&ES	ENSMUST00000114102.10	known	0.02	1	46	1	46	n	0.05	2	39	2	39	y	0.08	3	36	3	36	y	0.02	1	46	1	46	n	0.00	0	54	0	54	n	0.00	0	18	0	18	n	0.04	2	53	2	53	y	0.06	1	17	1	17	n	0.06	2	29	2	29	y	0.02	1	48	1	48	n	0.00	0	31	0	31	n	0.03	1	39	1	39	n	ENSMUSG00000026927.18	Entr1	chr2	protein_coding	endosome associated trafficking regulator 1
known_NIR_11040	chr2	26277683	26279161	-	26277683	26278504	A5SS&ES	ENSMUST00000137814.8	known	0.36	26	46	26	46	y	0.34	20	39	20	39	y	0.62	59	36	59	36	y	0.36	26	46	26	46	y	0.49	52	54	52	54	y	0.65	34	18	34	18	y	0.48	48	53	48	53	y	0.50	17	17	17	17	y	0.38	18	29	18	29	y	0.38	29	48	29	48	y	0.45	25	31	25	31	y	0.50	39	39	39	39	y	ENSMUSG00000026927.18	Entr1	chr2	protein_coding	endosome associated trafficking regulator 1
known_NIR_11041	chr2	26277683	26279161	-	26277683	26278598	5pMXE	ENSMUST00000139738.2	known	0.96	26	1	26	1	n	0.91	20	2	20	2	y	0.95	59	3	59	3	y	0.96	26	1	26	1	n	1.00	52	0	52	0	n	1.00	34	0	34	0	n	0.96	48	2	48	2	y	0.94	17	1	17	1	n	0.90	18	2	18	2	y	0.97	29	1	29	1	n	1.00	25	0	25	0	n	0.97	39	1	39	1	n	ENSMUSG00000026927.18	Entr1	chr2	protein_coding	endosome associated trafficking regulator 1
known_NIR_11042	chr2	26277683	26279161	-	26277683	26278928	A5SS	ENSMUST00000140074.2	known	0.90	26	3	26	3	y	0.95	20	1	20	1	n	0.97	59	2	59	2	y	0.96	26	1	26	1	n	0.96	52	2	52	2	y	1.00	34	0	34	0	n	1.00	48	0	48	0	n	0.94	17	1	17	1	n	0.90	18	2	18	2	y	0.94	29	2	29	2	y	0.89	25	3	25	3	y	1.00	39	0	39	0	n	ENSMUSG00000026927.18	Entr1	chr2	protein_coding	endosome associated trafficking regulator 1
known_NIR_11043	chr2	26277683	26279161	-	26277683;26279077	26278928;26279161	ES	ENSMUST00000114100.10	known	0.90	26	3.0	26	3;3	y	0.98	20	0.5	20	1;0	n	0.94	59	3.5	59	2;5	y	0.93	26	2.0	26	1;3	n	0.92	52	4.5	52	2;7	y	0.97	34	1.0	34	0;2	n	0.97	48	1.5	48	0;3	n	0.89	17	2.0	17	1;3	n	0.92	18	1.5	18	2;1	n	0.92	29	2.5	29	2;3	y	0.91	25	2.5	25	3;2	y	1.00	39	0.0	39	0;0	n	ENSMUSG00000026927.18	Entr1	chr2	protein_coding	endosome associated trafficking regulator 1
known_NIR_11044	chr2	26277683;26278572	26278504;26278928	-	26277683	26278928	cassetteExon	ENSMUST00000114100.10	known	0.89	25.0	3	46;4	3	y	0.96	22.5	1	39;6	1	n	0.90	18.0	2	36;0	2	n	0.96	24.5	1	46;3	1	n	0.94	29.0	2	54;4	2	y	1.00	10.5	0	18;3	0	n	1.00	28.5	0	53;4	0	n	0.92	11.0	1	17;5	1	n	0.89	16.5	2	29;4	2	y	0.94	29.0	2	48;10	2	y	0.86	18.0	3	31;5	3	y	1.00	21.5	0	39;4	0	n	ENSMUSG00000026927.18	Entr1	chr2	protein_coding	endosome associated trafficking regulator 1
known_NIR_11045	chr2	26277683;26278572	26278504;26279161	-	26277683	26279161	cassetteExon	ENSMUST00000077983.13	known	0.54	30.5	26	46;15	26	y	0.62	33.0	20	39;27	20	y	0.32	28.0	59	36;20	59	y	0.59	37.0	26	46;28	26	y	0.43	39.5	52	54;25	52	y	0.28	13.0	34	18;8	34	y	0.46	41.0	48	53;29	48	y	0.47	15.0	17	17;13	17	y	0.58	25.0	18	29;21	18	y	0.58	39.5	29	48;31	29	y	0.52	27.0	25	31;23	25	y	0.42	28.0	39	39;17	39	y	ENSMUSG00000026927.18	Entr1	chr2	protein_coding	endosome associated trafficking regulator 1
known_NIR_11046	chr2	26277683;26278572	26278504;26279161	-	26277683;26279077	26278928;26279161	MXE	ENSMUST00000114100.10	known	0.91	30.5	3.0	46;15	3;3	y	0.99	33.0	0.5	39;27	1;0	n	0.89	28.0	3.5	36;20	2;5	y	0.95	37.0	2.0	46;28	1;3	n	0.90	39.5	4.5	54;25	2;7	y	0.93	13.0	1.0	18;8	0;2	n	0.96	41.0	1.5	53;29	0;3	n	0.88	15.0	2.0	17;13	1;3	n	0.94	25.0	1.5	29;21	2;1	n	0.94	39.5	2.5	48;31	2;3	y	0.92	27.0	2.5	31;23	3;2	y	1.00	28.0	0.0	39;17	0;0	n	ENSMUSG00000026927.18	Entr1	chr2	protein_coding	endosome associated trafficking regulator 1
known_NIR_11047	chr2	26277683;26279077	26278598;26279161	-	26277683	26279161	cassetteExon	ENSMUST00000077983.13	known	0.07	2.0	26	1;3	26	n	0.05	1.0	20	2;0	20	n	0.06	4.0	59	3;5	59	y	0.07	2.0	26	1;3	26	n	0.06	3.5	52	0;7	52	n	0.03	1.0	34	0;2	34	n	0.05	2.5	48	2;3	48	y	0.11	2.0	17	1;3	17	n	0.08	1.5	18	2;1	18	n	0.06	2.0	29	1;3	29	n	0.04	1.0	25	0;2	25	n	0.01	0.5	39	1;0	39	n	ENSMUSG00000026927.18	Entr1	chr2	protein_coding	endosome associated trafficking regulator 1
known_NIR_11048	chr2	26277683;26279077	26278598;26279161	-	26277683;26278572	26278504;26279161	MXE	ENSMUST00000028293.12	known	0.06	2.0	30.5	1;3	46;15	n	0.03	1.0	33.0	2;0	39;27	n	0.12	4.0	28.0	3;5	36;20	y	0.05	2.0	37.0	1;3	46;28	n	0.08	3.5	39.5	0;7	54;25	n	0.07	1.0	13.0	0;2	18;8	n	0.06	2.5	41.0	2;3	53;29	y	0.12	2.0	15.0	1;3	17;13	n	0.06	1.5	25.0	2;1	29;21	n	0.05	2.0	39.5	1;3	48;31	n	0.04	1.0	27.0	0;2	31;23	n	0.02	0.5	28.0	1;0	39;17	n	ENSMUSG00000026927.18	Entr1	chr2	protein_coding	endosome associated trafficking regulator 1
known_NIR_11049	chr2	26278572	26279161	-	26278572	26278928	A5SS	ENSMUST00000137814.8	known	0.79	15	4	15	4	y	0.82	27	6	27	6	y	1.00	20	0	20	0	n	0.90	28	3	28	3	y	0.86	25	4	25	4	y	0.73	8	3	8	3	y	0.88	29	4	29	4	y	0.72	13	5	13	5	y	0.84	21	4	21	4	y	0.76	31	10	31	10	y	0.82	23	5	23	5	y	0.81	17	4	17	4	y	ENSMUSG00000026927.18	Entr1	chr2	protein_coding	endosome associated trafficking regulator 1
known_NIR_11050	chr2	26278572;26279077	26278928;26279161	-	26278572	26279161	cassetteExon	ENSMUST00000028293.12	known	0.19	3.5	15	4;3	15	y	0.10	3.0	27	6;0	27	n	0.11	2.5	20	0;5	20	n	0.10	3.0	28	3;3	28	y	0.18	5.5	25	4;7	25	y	0.24	2.5	8	3;2	8	y	0.11	3.5	29	4;3	29	y	0.24	4.0	13	5;3	13	y	0.11	2.5	21	4;1	21	n	0.17	6.5	31	10;3	31	y	0.13	3.5	23	5;2	23	y	0.11	2.0	17	4;0	17	n	ENSMUSG00000026927.18	Entr1	chr2	protein_coding	endosome associated trafficking regulator 1
known_NIR_11051	chr2	26286909	26288568	-	26287983	26288568	A3SS	ENSMUST00000145701.8	known	0.06	1	15	1	15	n	0.09	1	10	1	10	n	0.00	0	17	0	17	n	0.16	3	16	3	16	y	0.06	2	29	2	29	y	0.20	1	4	1	4	n	0.09	2	21	2	21	y	0.00	0	6	0	6	n	0.07	1	14	1	14	n	0.21	4	15	4	15	y	0.00	0	13	0	13	n	0.12	3	23	3	23	y	ENSMUSG00000026925.17	Inpp5e	chr2	protein_coding	inositol polyphosphate-5-phosphatase E
known_NIR_11052	chr2	26287936	26288568	-	26287983	26288568	A3SS	ENSMUST00000145701.8	known	0.12	2	15	2	15	y	0.00	0	10	0	10	n	0.11	2	17	2	17	y	0.06	1	16	1	16	n	0.03	1	29	1	29	n	0.00	0	4	0	4	n	0.00	0	21	0	21	n	0.00	0	6	0	6	n	0.07	1	14	1	14	n	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.00	0	23	0	23	n	ENSMUSG00000026925.17	Inpp5e	chr2	protein_coding	inositol polyphosphate-5-phosphatase E
known_NIR_11053	chr2	26291797	26292112	-	26291710	26292112	A3SS	ENSMUST00000145701.8	known	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.13	2	13	2	13	y	0.00	0	16	0	16	n	0.00	0	18	0	18	n	0.00	0	7	0	7	n	0.00	0	16	0	16	n	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.00	0	23	0	23	n	0.06	1	16	1	16	n	0.00	0	16	0	16	n	ENSMUSG00000026925.17	Inpp5e	chr2	protein_coding	inositol polyphosphate-5-phosphatase E
known_NIR_11054	chr2	26302925;26303750	26303691;26304383	-	26302925	26304383	cassetteExon	ENSMUST00000156442.8	known	0.60	72.0	49	74;70	49	y	0.58	64.5	46	65;64	46	y	0.54	96.0	82	103;89	82	y	0.53	59.5	52	57;62	52	y	0.56	106.0	83	105;107	83	y	0.63	74.0	43	81;67	43	y	0.54	74.5	64	70;79	64	y	0.47	50.5	56	52;49	56	y	0.57	59.0	44	57;61	44	y	0.56	64.5	50	59;70	50	y	0.60	59.0	40	59;59	40	y	0.56	62.0	49	57;67	49	y	ENSMUSG00000026924.18	Sec16a	chr2	protein_coding	SEC16 homolog A, endoplasmic reticulum export factor
known_NIR_11055	chr2	26304457	26305294	-	26304457	26305319	A5SS	ENSMUST00000156442.8	known	0.00	0	150	0	150	n	0.00	0	119	0	119	n	0.00	1	220	1	220	n	0.00	0	151	0	151	n	0.00	0	211	0	211	n	0.00	0	118	0	118	n	0.00	0	154	0	154	n	0.02	2	85	2	85	y	0.00	0	115	0	115	n	0.00	0	154	0	154	n	0.00	0	126	0	126	n	0.00	0	129	0	129	n	ENSMUSG00000026924.18	Sec16a	chr2	protein_coding	SEC16 homolog A, endoplasmic reticulum export factor
known_NIR_11056	chr2	26306269	26306383	-	26306240	26306383	A3SS	ENSMUST00000156442.8	known	0.00	0	139	0	139	n	0.02	2	92	2	92	y	0.01	1	196	1	196	n	0.02	2	110	2	110	y	0.00	0	156	0	156	n	0.01	1	104	1	104	n	0.00	0	124	0	124	n	0.01	1	93	1	93	n	0.01	1	116	1	116	n	0.00	0	128	0	128	n	0.01	1	121	1	121	n	0.03	3	99	3	99	y	ENSMUSG00000026924.18	Sec16a	chr2	protein_coding	SEC16 homolog A, endoplasmic reticulum export factor
known_NIR_11057	chr2	26474060	26475597	+	26471253	26475597	A5SS	ENSMUST00000238951.2	known	0.59	16	11	16	11	y	0.45	14	17	14	17	y	0.50	23	23	23	23	y	0.61	11	7	11	7	y	0.49	22	23	22	23	y	0.43	13	17	13	17	y	0.56	30	24	30	24	y	0.50	9	9	9	9	y	0.50	10	10	10	10	y	0.78	25	7	25	7	y	0.75	30	10	30	10	y	0.62	13	8	13	8	y	ENSMUSG00000026921.21	Egfl7	chr2	protein_coding	EGF-like domain 7
known_NIR_11058	chr2	26476693	26479057	+	26475687	26479057	A5SS	ENSMUST00000152713.9	known	0.00	0	21	0	21	n	0.03	1	37	1	37	n	0.04	2	45	2	45	y	0.16	4	21	4	21	y	0.02	1	53	1	53	n	0.11	2	17	2	17	y	0.00	0	70	0	70	n	0.07	1	13	1	13	n	0.10	2	19	2	19	y	0.02	1	41	1	41	n	0.03	1	36	1	36	n	0.00	0	32	0	32	n	ENSMUSG00000026921.21	Egfl7	chr2	protein_coding	EGF-like domain 7
known_NIR_11059	chr2	26476729	26479057	+	26475687	26479057	A5SS	ENSMUST00000152713.9	known	0.00	0	21	0	21	n	0.00	0	37	0	37	n	0.00	0	45	0	45	n	0.00	0	21	0	21	n	0.00	0	53	0	53	n	0.11	2	17	2	17	y	0.00	0	70	0	70	n	0.00	0	13	0	13	n	0.00	0	19	0	19	n	0.00	0	41	0	41	n	0.00	0	36	0	36	n	0.00	0	32	0	32	n	ENSMUSG00000026921.21	Egfl7	chr2	protein_coding	EGF-like domain 7
known_NIR_11060	chr2	26481075	26482130	+	26481075;26481740	26481676;26482130	ES	ENSMUST00000238951.2	known	0.13	8	51.5	8	46;57	y	0.02	1	62.5	1	57;68	n	0.22	15	53.0	15	49;57	y	0.00	0	37.0	0	31;43	n	0.08	6	70.0	6	62;78	y	0.06	2	29.0	2	25;33	y	0.06	6	92.5	6	82;103	y	0.09	3	29.0	3	29;29	y	0.15	6	35.0	6	29;41	y	0.00	0	61.5	0	51;72	n	0.04	3	65.5	3	58;73	y	0.04	2	52.0	2	46;58	y	ENSMUSG00000026921.21	Egfl7	chr2	protein_coding	EGF-like domain 7
known_NIR_11061	chr2	26481075	26482130	+	26481740	26482130	5pMXE	ENSMUST00000152988.9	known	0.12	8	57	8	57	y	0.01	1	68	1	68	n	0.21	15	57	15	57	y	0.00	0	43	0	43	n	0.07	6	78	6	78	y	0.06	2	33	2	33	y	0.06	6	103	6	103	y	0.09	3	29	3	29	y	0.13	6	41	6	41	y	0.00	0	72	0	72	n	0.04	3	73	3	73	y	0.03	2	58	2	58	y	ENSMUSG00000026921.21	Egfl7	chr2	protein_coding	EGF-like domain 7
known_NIR_11062	chr2	26482253	26482430	+	26482292	26482430	A5SS	ENSMUST00000238951.2	known	0.08	7	82	7	82	y	0.09	8	81	8	81	y	0.00	0	77	0	77	n	0.00	0	56	0	56	n	0.13	15	99	15	99	y	0.00	0	58	0	58	n	0.04	5	120	5	120	y	0.07	3	40	3	40	y	0.06	3	45	3	45	y	0.00	0	75	0	75	n	0.09	8	78	8	78	y	0.10	8	69	8	69	y	ENSMUSG00000026921.21	Egfl7	chr2	protein_coding	EGF-like domain 7
known_NIR_11063	chr2	26482261	26482430	+	26482253	26482430	A5SS	ENSMUST00000100290.13	known	0.22	2	7	2	7	n	0.53	9	8	9	8	y	1.00	7	0	7	0	n	1.00	4	0	4	0	n	0.32	7	15	7	15	y	1.00	4	0	4	0	n	0.72	13	5	13	5	y	0.62	5	3	5	3	n	0.57	4	3	4	3	n	1.00	6	0	6	0	n	0.58	11	8	11	8	y	0.38	5	8	5	8	y	ENSMUSG00000026921.21	Egfl7	chr2	protein_coding	EGF-like domain 7
known_NIR_11064	chr2	26482261	26482430	+	26482292	26482430	A5SS	ENSMUST00000238951.2	known	0.02	2	82	2	82	y	0.10	9	81	9	81	y	0.08	7	77	7	77	y	0.07	4	56	4	56	y	0.07	7	99	7	99	y	0.06	4	58	4	58	y	0.10	13	120	13	120	y	0.11	5	40	5	40	y	0.08	4	45	4	45	y	0.07	6	75	6	75	y	0.12	11	78	11	78	y	0.07	5	69	5	69	y	ENSMUSG00000026921.21	Egfl7	chr2	protein_coding	EGF-like domain 7
known_NIR_11065	chr2	26487349	26493661	-	26487349	26494041	A5SS	ENSMUST00000028286.12	known	0.00	2	503	2	503	y	0.00	1	417	1	417	n	0.00	1	780	1	780	n	0.00	2	583	2	583	y	0.00	2	988	2	988	y	0.00	2	502	2	502	y	0.00	2	601	2	601	y	0.01	2	398	2	398	y	0.00	1	384	1	384	n	0.01	4	648	4	648	y	0.00	1	532	1	532	n	0.00	0	527	0	527	n	ENSMUSG00000026922.14	Agpat2	chr2	protein_coding	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)
known_NIR_11066	chr2	26487349	26493661	-	26487349	26494136	A5SS	ENSMUST00000131940.8	known	0.09	2	21	2	21	y	0.03	1	37	1	37	n	0.03	1	30	1	30	n	0.06	2	31	2	31	y	0.04	2	48	2	48	y	0.09	2	21	2	21	y	0.05	2	36	2	36	y	0.09	2	21	2	21	y	0.06	1	16	1	16	n	0.11	4	32	4	32	y	0.07	1	13	1	13	n	0.00	0	19	0	19	n	ENSMUSG00000026922.14	Agpat2	chr2	protein_coding	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)
known_NIR_11067	chr2	26487349	26493674	-	26487349	26494041	A5SS	ENSMUST00000028286.12	known	0.00	0	503	0	503	n	0.00	0	417	0	417	n	0.00	2	780	2	780	y	0.00	1	583	1	583	n	0.00	3	988	3	988	y	0.00	2	502	2	502	y	0.00	2	601	2	601	y	0.00	0	398	0	398	n	0.00	0	384	0	384	n	0.00	1	648	1	648	n	0.00	0	532	0	532	n	0.00	0	527	0	527	n	ENSMUSG00000026922.14	Agpat2	chr2	protein_coding	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)
known_NIR_11068	chr2	26487349	26493674	-	26487349	26494136	A5SS	ENSMUST00000131940.8	known	0.00	0	21	0	21	n	0.00	0	37	0	37	n	0.06	2	30	2	30	y	0.03	1	31	1	31	n	0.06	3	48	3	48	y	0.09	2	21	2	21	y	0.05	2	36	2	36	y	0.00	0	21	0	21	n	0.00	0	16	0	16	n	0.03	1	32	1	32	n	0.00	0	13	0	13	n	0.00	0	19	0	19	n	ENSMUSG00000026922.14	Agpat2	chr2	protein_coding	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)
known_NIR_11069	chr2	26487349	26494041	-	26487349	26494136	A5SS	ENSMUST00000131940.8	known	0.96	503	21	503	21	y	0.92	417	37	417	37	y	0.96	780	30	780	30	y	0.95	583	31	583	31	y	0.95	988	48	988	48	y	0.96	502	21	502	21	y	0.94	601	36	601	36	y	0.95	398	21	398	21	y	0.96	384	16	384	16	y	0.95	648	32	648	32	y	0.98	532	13	532	13	y	0.97	527	19	527	19	y	ENSMUSG00000026922.14	Agpat2	chr2	protein_coding	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)
known_NIR_11070	chr2	26782737	26782879	-	26779390	26782879	A3SS	ENSMUST00000137904.8	known	1.00	35	0	35	0	n	1.00	17	0	17	0	n	1.00	43	0	43	0	n	1.00	28	0	28	0	n	0.96	26	1	26	1	n	0.89	16	2	16	2	y	1.00	26	0	26	0	n	1.00	23	0	23	0	n	0.95	20	1	20	1	n	1.00	44	0	44	0	n	1.00	23	0	23	0	n	1.00	32	0	32	0	n	ENSMUSG00000036160.14	Surf6	chr2	protein_coding	surfeit gene 6
known_NIR_11071	chr2	26789944	26792600	-	26789944	26792706	A5SS	ENSMUST00000047632.14	known	0.21	3	11	3	11	y	0.00	0	12	0	12	n	0.00	0	22	0	22	n	0.00	0	18	0	18	n	0.00	0	32	0	32	n	0.07	1	14	1	14	n	0.00	0	28	0	28	n	0.05	1	18	1	18	n	0.00	0	9	0	9	n	0.00	0	18	0	18	n	0.00	0	11	0	11	n	0.19	3	13	3	13	y	ENSMUSG00000036160.14	Surf6	chr2	protein_coding	surfeit gene 6
known_NIR_11072	chr2	26798421	26799005	-	26798313	26799005	A3SS	ENSMUST00000102899.10	known	0.04	2	52	2	52	y	0.00	0	22	0	22	n	0.00	0	40	0	40	n	0.07	4	51	4	51	y	0.02	2	79	2	79	y	0.00	0	24	0	24	n	0.00	0	53	0	53	n	0.06	3	44	3	44	y	0.00	0	46	0	46	n	0.01	1	76	1	76	n	0.00	0	45	0	45	n	0.06	3	51	3	51	y	ENSMUSG00000015776.13	Med22	chr2	protein_coding	mediator complex subunit 22
known_NIR_11073	chr2	26802167	26802378	+	26802171	26802378	A5SS	ENSMUST00000102898.5	known	0.00	0	1873	0	1873	n	0.00	0	2202	0	2202	n	0.00	0	2431	0	2431	n	0.00	0	1839	0	1839	n	0.00	0	2361	0	2361	n	0.03	38	1275	38	1275	y	0.00	0	2670	0	2670	n	0.00	0	1311	0	1311	n	0.00	0	1824	0	1824	n	0.00	0	2796	0	2796	n	0.00	0	2476	0	2476	n	0.00	0	2579	0	2579	n	ENSMUSG00000062647.17	Rpl7a	chr2	protein_coding	ribosomal protein L7A
known_NIR_11074	chr2	26803702	26803925	-	26803670	26803925	A3SS	ENSMUST00000142967.7	known	0.01	1	169	1	169	n	0.01	3	207	3	207	y	0.01	2	154	2	154	y	0.00	0	178	0	178	n	0.01	1	194	1	194	n	0.02	2	86	2	86	y	0.02	5	227	5	227	y	0.00	0	105	0	105	n	0.01	2	169	2	169	y	0.01	3	244	3	244	y	0.00	0	219	0	219	n	0.01	2	237	2	237	y	ENSMUSG00000015790.17	Surf1	chr2	protein_coding	surfeit gene 1
known_NIR_11075	chr2	26805544	26805608	-	26805526	26805608	A3SS	ENSMUST00000183520.8	known	0.00	0	156	0	156	n	0.00	0	167	0	167	n	0.00	0	147	0	147	n	0.00	0	170	0	170	n	0.00	0	192	0	192	n	0.00	0	89	0	89	n	0.02	3	188	3	188	y	0.00	0	83	0	83	n	0.00	0	138	0	138	n	0.00	1	245	1	245	n	0.00	0	174	0	174	n	0.02	3	196	3	196	y	ENSMUSG00000015790.17	Surf1	chr2	protein_coding	surfeit gene 1
known_NIR_11076	chr2	26805761	26805967	-	26805741	26805967	A3SS	ENSMUST00000183520.8	known	0.05	5	101	5	101	y	0.06	7	105	7	105	y	0.08	8	91	8	91	y	0.07	9	124	9	124	y	0.07	9	113	9	113	y	0.07	4	51	4	51	y	0.07	9	111	9	111	y	0.07	5	63	5	63	y	0.05	4	83	4	83	y	0.08	13	153	13	153	y	0.06	9	133	9	133	y	0.05	8	162	8	162	y	ENSMUSG00000015790.17	Surf1	chr2	protein_coding	surfeit gene 1
known_NIR_11077	chr2	26805761	26805967	-	26805781	26805967	A3SS	ENSMUST00000167661.7	known	0.33	5	10	5	10	y	0.70	7	3	7	3	y	0.47	8	9	8	9	y	0.69	9	4	9	4	y	0.64	9	5	9	5	y	0.33	4	8	4	8	y	0.43	9	12	9	12	y	0.56	5	4	5	4	n	0.27	4	11	4	11	y	0.50	13	13	13	13	y	0.56	9	7	9	7	y	0.35	8	15	8	15	y	ENSMUSG00000015790.17	Surf1	chr2	protein_coding	surfeit gene 1
known_NIR_11078	chr2	26805781	26805967	-	26805741	26805967	A3SS	ENSMUST00000183520.8	known	0.09	10	101	10	101	y	0.03	3	105	3	105	y	0.09	9	91	9	91	y	0.03	4	124	4	124	y	0.04	5	113	5	113	y	0.14	8	51	8	51	y	0.10	12	111	12	111	y	0.06	4	63	4	63	y	0.12	11	83	11	83	y	0.08	13	153	13	153	y	0.05	7	133	7	133	y	0.08	15	162	15	162	y	ENSMUSG00000015790.17	Surf1	chr2	protein_coding	surfeit gene 1
known_NIR_11079	chr2	26805781	26806269	-	26805781;26806018	26805967;26806269	ES	ENSMUST00000167661.7	known	0.00	0	61.5	0	10;113	n	0.00	0	53.0	0	3;103	n	0.02	1	49.0	1	9;89	n	0.04	3	70.5	3	4;137	y	0.00	0	80.5	0	5;156	n	0.00	0	36.0	0	8;64	n	0.03	2	72.5	2	12;133	y	0.00	0	38.5	0	4;73	n	0.04	2	53.5	2	11;96	y	0.00	0	99.5	0	13;186	n	0.00	0	81.0	0	7;155	n	0.00	0	81.5	0	15;148	n	ENSMUSG00000015790.17	Surf1	chr2	protein_coding	surfeit gene 1
known_NIR_11080	chr2	26805781	26806269	-	26806018	26806269	A3SS&ES	ENSMUST00000183520.8	known	0.00	0	113	0	113	n	0.00	0	103	0	103	n	0.01	1	89	1	89	n	0.02	3	137	3	137	y	0.00	0	156	0	156	n	0.00	0	64	0	64	n	0.01	2	133	2	133	y	0.00	0	73	0	73	n	0.02	2	96	2	96	y	0.00	0	186	0	186	n	0.00	0	155	0	155	n	0.00	0	148	0	148	n	ENSMUSG00000015790.17	Surf1	chr2	protein_coding	surfeit gene 1
known_NIR_11081	chr2	26807543	26808877	+	26807543	26808885	A3SS	ENSMUST00000015017.8	known	0.10	3	26	3	26	y	0.13	3	20	3	20	y	0.10	4	35	4	35	y	0.06	2	30	2	30	y	0.00	0	47	0	47	n	0.13	2	13	2	13	y	0.09	3	31	3	31	y	0.06	1	15	1	15	n	0.07	3	37	3	37	y	0.11	4	34	4	34	y	0.06	2	34	2	34	y	0.00	0	30	0	30	n	ENSMUSG00000014873.16	Surf2	chr2	protein_coding	surfeit gene 2
known_NIR_11082	chr2	26807543	26808941	+	26807543	26808877	A3SS	ENSMUST00000157066.8	known	0.62	5	3	5	3	n	0.40	2	3	2	3	n	0.56	5	4	5	4	n	0.83	10	2	10	2	y	1.00	18	0	18	0	n	0.71	5	2	5	2	n	0.80	12	3	12	3	y	0.86	6	1	6	1	n	0.40	2	3	2	3	n	0.79	15	4	15	4	y	0.78	7	2	7	2	n	1.00	6	0	6	0	n	ENSMUSG00000014873.16	Surf2	chr2	protein_coding	surfeit gene 2
known_NIR_11083	chr2	26807543	26808941	+	26807543	26808885	A3SS	ENSMUST00000015017.8	known	0.16	5	26	5	26	y	0.09	2	20	2	20	y	0.12	5	35	5	35	y	0.25	10	30	10	30	y	0.28	18	47	18	47	y	0.28	5	13	5	13	y	0.28	12	31	12	31	y	0.29	6	15	6	15	y	0.05	2	37	2	37	y	0.31	15	34	15	34	y	0.17	7	34	7	34	y	0.17	6	30	6	30	y	ENSMUSG00000014873.16	Surf2	chr2	protein_coding	surfeit gene 2
known_NIR_11084	chr2	26809370	26809615	+	26809370	26809739	A3SS	ENSMUST00000015017.8	known	0.01	1	72	1	72	n	0.01	1	72	1	72	n	0.02	1	50	1	50	n	0.04	2	48	2	48	y	0.00	0	76	0	76	n	0.04	1	22	1	22	n	0.05	4	76	4	76	y	0.06	2	34	2	34	y	0.00	0	47	0	47	n	0.00	0	81	0	81	n	0.06	3	48	3	48	y	0.00	0	67	0	67	n	ENSMUSG00000014873.16	Surf2	chr2	protein_coding	surfeit gene 2
known_NIR_11085	chr2	26809370	26809745	+	26809370	26809739	A3SS	ENSMUST00000015017.8	known	0.00	0	72	0	72	n	0.01	1	72	1	72	n	0.00	0	50	0	50	n	0.00	0	48	0	48	n	0.05	4	76	4	76	y	0.15	4	22	4	22	y	0.00	0	76	0	76	n	0.00	0	34	0	34	n	0.00	0	47	0	47	n	0.05	4	81	4	81	y	0.00	0	48	0	48	n	0.00	0	67	0	67	n	ENSMUSG00000014873.16	Surf2	chr2	protein_coding	surfeit gene 2
known_NIR_11086	chr2	26815008	26816781	-	26815008;26815696	26815620;26816781	ES	ENSMUST00000015011.10	known	0.00	0	554.0	0	542;566	n	0.00	0	505.5	0	466;545	n	0.00	2	1394.0	2	1241;1547	y	0.00	0	658.5	0	601;716	n	0.01	6	1074.5	6	1033;1116	y	0.00	0	881.5	0	810;953	n	0.00	2	871.5	2	771;972	y	0.00	0	843.0	0	748;938	n	0.00	0	492.0	0	469;515	n	0.00	1	723.5	1	643;804	n	0.00	2	600.0	2	539;661	y	0.00	1	659.0	1	625;693	n	ENSMUSG00000014867.10	Surf4	chr2	protein_coding	surfeit gene 4
known_NIR_11087	chr2	26845581	26848491	-	26845581	26846301	5pMXE	ENSMUST00000123126.2	known	0.08	6	72	6	72	y	0.06	3	44	3	44	y	0.05	3	52	3	52	y	0.02	1	41	1	41	n	0.00	0	62	0	62	n	0.00	0	43	0	43	n	0.04	2	53	2	53	y	0.03	1	34	1	34	n	0.02	1	40	1	40	n	0.03	2	75	2	75	y	0.00	0	56	0	56	n	0.00	0	61	0	61	n	ENSMUSG00000052406.15	Rexo4	chr2	protein_coding	REX4, 3'-5' exonuclease
known_NIR_11088	chr2	26845581	26848491	-	26845581;26846375	26846301;26848491	ES	ENSMUST00000064244.11	known	0.08	6	67.5	6	72;63	y	0.07	3	43.0	3	44;42	y	0.05	3	52.0	3	52;52	y	0.03	1	37.0	1	41;33	n	0.00	0	56.5	0	62;51	n	0.00	0	40.5	0	43;38	n	0.04	2	52.5	2	53;52	y	0.03	1	32.0	1	34;30	n	0.03	1	34.0	1	40;28	n	0.03	2	67.0	2	75;59	y	0.00	0	51.5	0	56;47	n	0.00	0	55.0	0	61;49	n	ENSMUSG00000052406.15	Rexo4	chr2	protein_coding	REX4, 3'-5' exonuclease
known_NIR_11089	chr2	26900654	26904105	+	26900117	26904105	A5SS	ENSMUST00000114005.9	known	0.00	0	44	0	44	n	0.06	3	51	3	51	y	0.01	1	88	1	88	n	0.00	0	60	0	60	n	0.03	3	85	3	85	y	0.00	0	59	0	59	n	0.05	5	90	5	90	y	0.02	1	47	1	47	n	0.02	1	40	1	40	n	0.00	0	76	0	76	n	0.00	0	66	0	66	n	0.05	3	60	3	60	y	ENSMUSG00000015488.15	Cacfd1	chr2	protein_coding	calcium channel flower domain containing 1
known_NIR_11090	chr2	26905621	26907091	+	26905621	26905955	3pMXE	ENSMUST00000114005.9	known	0.07	1	14	1	14	n	0.17	2	10	2	10	y	0.33	6	12	6	12	y	0.23	3	10	3	10	y	0.11	3	25	3	25	y	0.38	5	8	5	8	y	0.09	1	10	1	10	n	0.04	1	23	1	23	n	0.17	2	10	2	10	y	0.18	3	14	3	14	y	0.14	1	6	1	6	n	0.17	2	10	2	10	y	ENSMUSG00000015488.15	Cacfd1	chr2	protein_coding	calcium channel flower domain containing 1
known_NIR_11091	chr2	26905621	26908385	+	26905621	26905955	3pMXE	ENSMUST00000114005.9	known	0.80	55	14	55	14	y	0.81	42	10	42	10	y	0.87	78	12	78	12	y	0.86	59	10	59	10	y	0.75	76	25	76	25	y	0.84	41	8	41	8	y	0.89	79	10	79	10	y	0.75	68	23	68	23	y	0.82	46	10	46	10	y	0.76	45	14	45	14	y	0.88	44	6	44	6	y	0.86	59	10	59	10	y	ENSMUSG00000015488.15	Cacfd1	chr2	protein_coding	calcium channel flower domain containing 1
known_NIR_11092	chr2	26905621	26908385	+	26905621	26907091	3pMXE	ENSMUST00000145290.2	known	0.98	55	1	55	1	n	0.95	42	2	42	2	y	0.93	78	6	78	6	y	0.95	59	3	59	3	y	0.96	76	3	76	3	y	0.89	41	5	41	5	y	0.99	79	1	79	1	n	0.99	68	1	68	1	n	0.96	46	2	46	2	y	0.94	45	3	45	3	y	0.98	44	1	44	1	n	0.97	59	2	59	2	y	ENSMUSG00000015488.15	Cacfd1	chr2	protein_coding	calcium channel flower domain containing 1
known_NIR_11093	chr2	27105197	27105490	-	27105197	27108810	A5SS	ENSMUST00000102886.10	known	0.00	4	1340	4	1340	y	0.00	0	1223	0	1223	n	0.00	0	226	0	226	n	0.00	1	1672	1	1672	n	0.00	1	1441	1	1441	n	0.01	2	291	2	291	y	0.00	1	1271	1	1271	n	0.00	1	456	1	456	n	0.00	0	1356	0	1356	n	0.00	0	2048	0	2048	n	0.00	2	1600	2	1600	y	0.00	1	1938	1	1938	n	ENSMUSG00000009614.17	Sardh	chr2	protein_coding	sarcosine dehydrogenase
known_NIR_11094	chr2	27105197	27105490	-	27105197	27110655	A5SS	ENSMUST00000091224.11	known	0.40	4	6	4	6	y	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.12	1	7	1	7	n	0.06	1	16	1	16	n	0.40	2	3	2	3	n	0.10	1	9	1	9	n	0.17	1	5	1	5	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.12	2	14	2	14	y	0.08	1	12	1	12	n	ENSMUSG00000009614.17	Sardh	chr2	protein_coding	sarcosine dehydrogenase
known_NIR_11095	chr2	27105197	27110655	-	27105197	27108810	5pMXE	ENSMUST00000127805.8	known	0.00	6	1340	6	1340	y	0.01	10	1223	10	1223	y	0.01	3	226	3	226	y	0.00	7	1672	7	1672	y	0.01	16	1441	16	1441	y	0.01	3	291	3	291	y	0.01	9	1271	9	1271	y	0.01	5	456	5	456	y	0.01	9	1356	9	1356	y	0.01	15	2048	15	2048	y	0.01	14	1600	14	1600	y	0.01	12	1938	12	1938	y	ENSMUSG00000009614.17	Sardh	chr2	protein_coding	sarcosine dehydrogenase
known_NIR_11096	chr2	27105197;27108923	27108810;27110655	-	27105197	27110655	cassetteExon	ENSMUST00000091224.11	known	1.00	1370.0	6	1340;1400	6	y	0.99	1204.0	10	1223;1185	10	y	0.99	240.0	3	226;254	3	y	1.00	1688.0	7	1672;1704	7	y	0.99	1426.0	16	1441;1411	16	y	0.99	285.5	3	291;280	3	y	0.99	1307.5	9	1271;1344	9	y	0.99	451.5	5	456;447	5	y	0.99	1366.5	9	1356;1377	9	y	0.99	1998.5	15	2048;1949	15	y	0.99	1570.0	14	1600;1540	14	y	0.99	1900.5	12	1938;1863	12	y	ENSMUSG00000009614.17	Sardh	chr2	protein_coding	sarcosine dehydrogenase
known_NIR_11097	chr2	27136714	27137360	-	27136714	27138254	A5SS	ENSMUST00000139312.8	known	0.05	3	53	3	53	y	0.06	2	30	2	30	y	0.17	4	20	4	20	y	0.04	4	107	4	107	y	0.00	0	68	0	68	n	0.06	1	17	1	17	n	0.05	3	58	3	58	y	0.04	1	22	1	22	n	0.03	2	71	2	71	y	0.02	2	105	2	105	y	0.00	0	57	0	57	n	0.00	0	79	0	79	n	ENSMUSG00000009614.17	Sardh	chr2	protein_coding	sarcosine dehydrogenase
known_NIR_11098	chr2	27136714	27138254	-	27136714	27136811	5pMXE	ENSMUST00000149733.8	known	1.00	53	0	53	0	n	0.97	30	1	30	1	n	1.00	20	0	20	0	n	1.00	107	0	107	0	n	0.97	68	2	68	2	y	1.00	17	0	17	0	n	1.00	58	0	58	0	n	0.96	22	1	22	1	n	1.00	71	0	71	0	n	1.00	105	0	105	0	n	1.00	57	0	57	0	n	0.98	79	2	79	2	y	ENSMUSG00000009614.17	Sardh	chr2	protein_coding	sarcosine dehydrogenase
known_NIR_11099	chr2	27159679	27160140	-	27159034	27160140	A3SS	ENSMUST00000056176.8	known	0.00	0	75	0	75	n	0.00	0	55	0	55	n	0.00	0	68	0	68	n	0.00	0	80	0	80	n	0.00	0	106	0	106	n	0.00	0	41	0	41	n	0.00	0	89	0	89	n	0.00	0	44	0	44	n	0.00	0	56	0	56	n	0.02	2	118	2	118	y	0.00	0	75	0	75	n	0.00	0	98	0	98	n	ENSMUSG00000009621.19	Vav2	chr2	protein_coding	vav 2 oncogene
known_NIR_11100	chr2	27226750;27276618	27276502;27316288	-	27226750	27316288	cassetteExon	ENSMUST00000185188.8	known	1.00	42.0	0	35;49	0	n	1.00	32.5	0	36;29	0	n	1.00	46.5	0	42;51	0	n	1.00	84.0	0	84;84	0	n	0.99	87.5	1	87;88	1	n	0.95	36.5	2	38;35	2	y	1.00	71.0	0	73;69	0	n	1.00	34.0	0	31;37	0	n	0.98	46.5	1	44;49	1	n	1.00	73.5	0	74;73	0	n	1.00	36.0	0	35;37	0	n	1.00	62.0	0	64;60	0	n	ENSMUSG00000009621.19	Vav2	chr2	protein_coding	vav 2 oncogene
known_NIR_11101	chr2	27343086;27343462	27343412;27344325	-	27343086	27344325	cassetteExon	ENSMUST00000028282.15	known	0.05	1.0	20	1;1	20	n	0.05	1.0	20	1;1	20	n	0.11	3.0	25	4;2	25	y	0.00	0.0	33	0;0	33	n	0.06	3.0	48	3;3	48	y	0.09	1.5	15	2;1	15	n	0.03	1.0	33	0;2	33	n	0.04	1.0	23	1;1	23	n	0.00	0.0	28	0;0	28	n	0.00	0.0	43	0;0	43	n	0.03	1.0	35	2;0	35	n	0.06	2.0	29	2;2	29	y	ENSMUSG00000026918.17	Brd3	chr2	protein_coding	bromodomain containing 3
known_NIR_11102	chr2	27354205	27365058	-	27354205	27365589	A5SS	ENSMUST00000077737.13	known	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	20	0	20	n	0.00	0	24	0	24	n	0.06	1	16	1	16	n	0.10	1	9	1	9	n	0.11	2	16	2	16	y	0.12	1	7	1	7	n	0.06	1	15	1	15	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	18	0	18	n	ENSMUSG00000026918.17	Brd3	chr2	protein_coding	bromodomain containing 3
known_NIR_11103	chr2	27354205	27365589	-	27354205	27365154	5pMXE	ENSMUST00000028282.15	known	1.00	14	0	14	0	n	1.00	8	0	8	0	n	1.00	20	0	20	0	n	0.96	24	1	24	1	n	0.94	16	1	16	1	n	1.00	9	0	9	0	n	0.94	16	1	16	1	n	0.78	7	2	7	2	n	0.88	15	2	15	2	y	1.00	14	0	14	0	n	0.82	9	2	9	2	y	0.86	18	3	18	3	y	ENSMUSG00000026918.17	Brd3	chr2	protein_coding	bromodomain containing 3
known_NIR_11104	chr2	27354205;27362626	27362588;27365589	-	27354205	27365589	cassetteExon	ENSMUST00000077737.13	known	0.10	1.5	14	3;0	14	n	0.24	2.5	8	4;1	8	n	0.18	4.5	20	5;4	20	y	0.02	0.5	24	1;0	24	n	0.18	3.5	16	4;3	16	y	0.05	0.5	9	1;0	9	n	0.03	0.5	16	1;0	16	n	0.12	1.0	7	1;1	7	n	0.06	1.0	15	2;0	15	n	0.12	2.0	14	4;0	14	n	0.18	2.0	9	3;1	9	n	0.16	3.5	18	5;2	18	y	ENSMUSG00000026918.17	Brd3	chr2	protein_coding	bromodomain containing 3
known_NIR_11105	chr2	27430532	27432741	+	27430606	27432741	A5SS	ENSMUST00000142511.2	known	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.40	4	6	4	6	y	-	-	-	-	-	-	0.40	2	3	2	3	n	0.00	0	2	0	2	n	0.50	2	2	2	2	n	0.40	4	6	4	6	y	0.33	2	4	2	4	n	0.29	2	5	2	5	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	ENSMUSG00000085929.2	Gm13421	chr2	lncRNA	predicted gene 13421
known_NIR_11106	chr2	27567472	27627311	+	27566527	27627311	A5SS	ENSMUST00000129514.8	known	0.83	108	22	108	22	y	0.80	74	18	74	18	y	0.94	205	12	205	12	y	0.85	138	25	138	25	y	0.83	235	47	235	47	y	0.93	143	11	143	11	y	0.82	144	31	144	31	y	0.90	119	13	119	13	y	0.87	81	12	81	12	y	0.81	165	38	165	38	y	0.81	101	23	101	23	y	0.88	169	23	169	23	y	ENSMUSG00000015846.16	Rxra	chr2	protein_coding	retinoid X receptor alpha
known_NIR_11107	chr2	27611748	27627311	+	27566527	27627311	A5SS	ENSMUST00000129514.8	known	0.00	0	22	0	22	n	0.00	0	18	0	18	n	0.00	0	12	0	12	n	0.04	1	25	1	25	n	0.04	2	47	2	47	y	0.00	0	11	0	11	n	0.00	0	31	0	31	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.03	1	38	1	38	n	0.00	0	23	0	23	n	0.00	0	23	0	23	n	ENSMUSG00000015846.16	Rxra	chr2	protein_coding	retinoid X receptor alpha
known_NIR_11108	chr2	27611748	27627311	+	27567472	27627311	A5SS	ENSMUST00000077257.12	known	0.00	0	108	0	108	n	0.00	0	74	0	74	n	0.00	0	205	0	205	n	0.01	1	138	1	138	n	0.01	2	235	2	235	y	0.00	0	143	0	143	n	0.00	0	144	0	144	n	0.00	0	119	0	119	n	0.00	0	81	0	81	n	0.01	1	165	1	165	n	0.00	0	101	0	101	n	0.00	0	169	0	169	n	ENSMUSG00000015846.16	Rxra	chr2	protein_coding	retinoid X receptor alpha
known_NIR_11109	chr2	27915717;27919177	27919109;27922603	+	27915717;27919047	27918979;27922603	MXE	ENSMUST00000028280.14	known	0.83	2.5	0.5	1;4	1;0	n	1.00	4.0	0.0	3;5	0;0	n	1.00	2.0	0.0	0;4	0;0	n	0.83	2.5	0.5	2;3	1;0	n	0.67	5.0	2.5	6;4	1;4	n	0.50	1.0	1.0	1;1	2;0	n	0.48	6.5	7.0	6;7	7;7	y	0.40	1.0	1.5	1;1	1;2	n	0.50	0.5	0.5	0;1	1;0	n	1.00	1.0	0.0	0;2	0;0	n	0.88	3.5	0.5	4;3	0;1	n	0.71	2.5	1.0	2;3	2;0	n	ENSMUSG00000026837.17	Col5a1	chr2	protein_coding	collagen, type V, alpha 1
known_NIR_11110	chr2	28102699	28104621	+	28102699	28104113	3pMXE	ENSMUST00000152415.2	known	0.60	3	2	3	2	n	0.00	0	5	0	5	n	0.55	6	5	6	5	y	0.17	1	5	1	5	n	0.53	8	7	8	7	y	0.86	6	1	6	1	n	0.63	12	7	12	7	y	0.00	0	4	0	4	n	1.00	3	0	3	0	n	0.67	4	2	4	2	n	0.50	1	1	1	1	n	0.33	3	6	3	6	n	ENSMUSG00000026833.19	Olfm1	chr2	protein_coding	olfactomedin 1
known_NIR_11111	chr2	28359340	28359435	+	28358962	28359435	A5SS	ENSMUST00000038600.4	known	0.01	1	82	1	82	n	0.00	0	59	0	59	n	0.00	0	79	0	79	n	0.02	2	83	2	83	y	0.06	7	110	7	110	y	0.02	1	58	1	58	n	0.04	3	81	3	81	y	0.04	2	48	2	48	y	0.03	2	65	2	65	y	0.02	2	93	2	93	y	0.03	2	73	2	73	y	0.04	3	66	3	66	y	ENSMUSG00000035772.12	Mrps2	chr2	protein_coding	mitochondrial ribosomal protein S2
known_NIR_11112	chr2	28432495	28432867	+	28432495	28432903	A3SS	ENSMUST00000135803.8	known	-	-	-	-	-	-	-	-	-	-	-	-	0.72	13	5	13	5	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026821.17	Ralgds	chr2	protein_coding	ral guanine nucleotide dissociation stimulator
known_NIR_11113	chr2	28457796	28458497	-	28457814	28458497	A3SS	ENSMUST00000113889.9	known	0.80	12	3	12	3	y	1.00	14	0	14	0	n	0.79	15	4	15	4	y	0.94	15	1	15	1	n	1.00	21	0	21	0	n	1.00	9	0	9	0	n	0.93	28	2	28	2	y	1.00	14	0	14	0	n	1.00	17	0	17	0	n	0.92	22	2	22	2	y	0.87	13	2	13	2	y	1.00	29	0	29	0	n	ENSMUSG00000026816.15	Gtf3c5	chr2	protein_coding	general transcription factor IIIC, polypeptide 5
known_NIR_11114	chr2	28531302	28542181	+	28531331	28542181	A5SS	ENSMUST00000156857.8	known	0.00	0	3	0	3	n	0.33	2	4	2	4	n	0.40	4	6	4	6	y	0.78	7	2	7	2	n	0.40	6	9	6	9	y	0.75	3	1	3	1	n	1.00	8	0	8	0	n	0.50	3	3	3	3	n	0.67	4	2	4	2	n	0.64	7	4	7	4	y	0.67	2	1	2	1	n	0.75	6	2	6	2	n	ENSMUSG00000026812.17	Tsc1	chr2	protein_coding	TSC complex subunit 1
known_NIR_11115	chr2	28568217	28568979	+	28568217	28568964	A3SS	ENSMUST00000028155.12	known	0.00	0	8	0	8	n	0.17	1	5	1	5	n	0.00	0	18	0	18	n	0.11	1	8	1	8	n	0.32	8	17	8	17	y	0.00	0	5	0	5	n	0.42	5	7	5	7	y	0.00	0	13	0	13	n	0.50	4	4	4	4	n	0.30	3	7	3	7	y	0.36	5	9	5	9	y	0.18	4	18	4	18	y	ENSMUSG00000026812.17	Tsc1	chr2	protein_coding	TSC complex subunit 1
known_NIR_11116	chr2	29063733;29064495	29064331;29066889	+	29063733	29066889	cassetteExon	ENSMUST00000061578.9	known	0.00	0.0	17	0;0	17	n	0.00	0.0	15	0;0	15	n	0.04	1.5	33	3;0	33	n	0.03	0.5	19	0;1	19	n	0.07	2.0	27	2;2	27	y	0.07	2.0	28	2;2	28	y	0.06	1.0	15	2;0	15	n	0.04	1.0	26	2;0	26	n	0.10	1.0	9	2;0	9	n	0.00	0.0	27	0;0	27	n	0.07	1.0	14	2;0	14	n	0.00	0.0	41	0;0	41	n	ENSMUSG00000043535.14	Setx	chr2	protein_coding	senataxin
known_NIR_11117	chr2	29361398	29367345	+	29361398	29390231	A3SS	ENSMUST00000028139.11	known	0.27	3	8	3	8	y	0.00	0	23	0	23	n	0.09	2	21	2	21	y	0.00	0	27	0	27	n	0.07	2	28	2	28	y	0.06	1	17	1	17	n	0.17	4	19	4	19	y	0.25	2	6	2	6	n	0.12	3	22	3	22	y	0.09	3	32	3	32	y	0.09	2	20	2	20	y	0.05	1	21	1	21	n	ENSMUSG00000026799.16	Med27	chr2	protein_coding	mediator complex subunit 27
known_NIR_11118	chr2	29569281	29576117	+	29569281;29569862	29569749;29576117	ES	ENSMUST00000095087.11	known	0.59	22	15.5	22	15;16	y	0.53	12	10.5	12	13;8	y	0.40	18	27.0	18	27;27	y	0.37	14	24.0	14	17;31	y	0.45	26	31.5	26	23;40	y	0.43	15	19.5	15	24;15	y	0.48	24	26.0	24	24;28	y	0.46	16	19.0	16	22;16	y	0.52	17	16.0	17	16;16	y	0.54	34	28.5	34	26;31	y	0.43	14	18.5	14	17;20	y	0.53	26	23.0	26	21;25	y	ENSMUSG00000039844.21	Rapgef1	chr2	protein_coding	Rap guanine nucleotide exchange factor (GEF) 1
known_NIR_11119	chr2	29597412	29600168	+	29597412	29600165	A3SS	ENSMUST00000095087.11	known	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	5	5	5	5	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	n	1.00	1	0	1	0	n	0.75	3	1	3	1	n	ENSMUSG00000039844.21	Rapgef1	chr2	protein_coding	Rap guanine nucleotide exchange factor (GEF) 1
known_NIR_11120	chr2	29609862	29612236	+	29597412	29612236	A5SS	ENSMUST00000102872.11	known	0.00	0	37	0	37	n	0.00	0	16	0	16	n	0.00	0	47	0	47	n	0.02	1	60	1	60	n	0.00	0	78	0	78	n	0.00	0	31	0	31	n	0.10	6	56	6	56	y	0.00	0	38	0	38	n	0.00	0	46	0	46	n	0.01	1	83	1	83	n	0.03	1	32	1	32	n	0.02	1	57	1	57	n	ENSMUSG00000039844.21	Rapgef1	chr2	protein_coding	Rap guanine nucleotide exchange factor (GEF) 1
known_NIR_11121	chr2	29609862;29610750	29610655;29612236	+	29609862	29612236	cassetteExon	ENSMUST00000095087.11	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2.0	1	0;4	1	n	-	-	-	-	-	-	1.00	0.5	0	0;1	0	n	0.57	8.0	6	7;9	6	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0.0	1	0;0	1	n	0.33	0.5	1	0;1	1	n	0.33	0.5	1	0;1	1	n	ENSMUSG00000039844.21	Rapgef1	chr2	protein_coding	Rap guanine nucleotide exchange factor (GEF) 1
known_NIR_11122	chr2	29610750	29612236	+	29597412	29612236	A5SS	ENSMUST00000102872.11	known	0.00	0	37	0	37	n	0.00	0	16	0	16	n	0.00	0	47	0	47	n	0.06	4	60	4	60	y	0.00	0	78	0	78	n	0.03	1	31	1	31	n	0.14	9	56	9	56	y	0.00	0	38	0	38	n	0.00	0	46	0	46	n	0.00	0	83	0	83	n	0.03	1	32	1	32	n	0.02	1	57	1	57	n	ENSMUSG00000039844.21	Rapgef1	chr2	protein_coding	Rap guanine nucleotide exchange factor (GEF) 1
known_NIR_11123	chr2	29667968	29669835	-	29667968;29668880	29668744;29669835	ES	ENSMUST00000156846.8	known	0.21	4	15.0	4	10;20	y	0.05	1	18.0	1	13;23	n	0.25	11	33.0	11	33;33	y	0.00	0	20.5	0	13;28	n	0.07	2	26.0	2	23;29	y	0.00	0	19.5	0	13;26	n	0.03	1	32.0	1	34;30	n	0.00	0	15.0	0	11;19	n	0.00	0	13.5	0	11;16	n	0.00	0	25.0	0	18;32	n	0.00	0	19.0	0	16;22	n	0.05	1	20.5	1	19;22	n	ENSMUSG00000039826.14	Trub2	chr2	protein_coding	TruB pseudouridine (psi) synthase family member 2
known_NIR_11124	chr2	29667968	29669835	-	29668880	29669835	3pMXE	ENSMUST00000177133.8	known	0.17	4	20	4	20	y	0.04	1	23	1	23	n	0.25	11	33	11	33	y	0.00	0	28	0	28	n	0.06	2	29	2	29	y	0.00	0	26	0	26	n	0.03	1	30	1	30	n	0.00	0	19	0	19	n	0.00	0	16	0	16	n	0.00	0	32	0	32	n	0.00	0	22	0	22	n	0.04	1	22	1	22	n	ENSMUSG00000039826.14	Trub2	chr2	protein_coding	TruB pseudouridine (psi) synthase family member 2
known_NIR_11125	chr2	29672213	29674965	-	29672213;29673385	29673324;29674965	ES	ENSMUST00000113807.10	known	0.36	6	10.5	6	9;12	y	0.23	4	13.5	4	12;15	y	0.30	8	18.5	8	18;19	y	0.42	9	12.5	9	16;9	y	0.24	6	19.0	6	22;16	y	0.13	3	20.0	3	22;18	y	0.29	8	20.0	8	22;18	y	0.12	2	15.0	2	12;18	y	0.35	6	11.0	6	9;13	y	0.11	2	15.5	2	14;17	y	0.33	8	16.5	8	17;16	y	0.30	5	11.5	5	14;9	y	ENSMUSG00000039826.14	Trub2	chr2	protein_coding	TruB pseudouridine (psi) synthase family member 2
known_NIR_11126	chr2	29672213	29674965	-	29673385	29674965	3pMXE	ENSMUST00000113803.8	known	0.33	6	12	6	12	y	0.21	4	15	4	15	y	0.30	8	19	8	19	y	0.50	9	9	9	9	y	0.27	6	16	6	16	y	0.14	3	18	3	18	y	0.31	8	18	8	18	y	0.10	2	18	2	18	y	0.32	6	13	6	13	y	0.11	2	17	2	17	y	0.33	8	16	8	16	y	0.36	5	9	5	9	y	ENSMUSG00000039826.14	Trub2	chr2	protein_coding	TruB pseudouridine (psi) synthase family member 2
known_NIR_11127	chr2	29680571	29685396	+	29680571	29685393	A3SS	ENSMUST00000028137.10	known	0.14	4	24	4	24	y	0.21	6	22	6	22	y	0.13	3	20	3	20	y	0.14	3	19	3	19	y	0.24	9	29	9	29	y	0.00	0	12	0	12	n	0.18	6	28	6	28	y	0.12	2	14	2	14	y	0.00	0	23	0	23	n	0.16	7	36	7	36	y	0.15	4	23	4	23	y	0.09	2	21	2	21	y	ENSMUSG00000026798.11	Coq4	chr2	protein_coding	coenzyme Q4
known_NIR_11128	chr2	29717447	29731414	+	29717447	29722704	3pMXE	ENSMUST00000130542.2	known	0.00	0	21	0	21	n	0.00	0	14	0	14	n	0.00	0	23	0	23	n	0.00	0	25	0	25	n	0.00	0	25	0	25	n	0.13	2	13	2	13	y	0.00	0	29	0	29	n	0.00	0	15	0	15	n	0.00	0	22	0	22	n	0.00	0	31	0	31	n	0.00	0	19	0	19	n	0.04	1	27	1	27	n	ENSMUSG00000069020.10	Urm1	chr2	protein_coding	ubiquitin related modifier 1
known_NIR_11129	chr2	29717447	29731414	+	29722774	29731414	A5SS&ES	ENSMUST00000149379.8	known	0.00	0	52	0	52	n	0.00	0	42	0	42	n	0.00	0	81	0	81	n	0.00	0	54	0	54	n	0.00	0	67	0	67	n	0.06	2	33	2	33	y	0.00	0	75	0	75	n	0.00	0	42	0	42	n	0.00	0	50	0	50	n	0.00	0	73	0	73	n	0.00	0	51	0	51	n	0.02	1	57	1	57	n	ENSMUSG00000069020.10	Urm1	chr2	protein_coding	ubiquitin related modifier 1
known_NIR_11130	chr2	29717447;29722774	29722704;29731414	+	29717447	29731414	cassetteExon	ENSMUST00000156944.8	known	1.00	36.5	0	21;52	0	n	1.00	28.0	0	14;42	0	n	1.00	52.0	0	23;81	0	n	1.00	39.5	0	25;54	0	n	1.00	46.0	0	25;67	0	n	0.92	23.0	2	13;33	2	y	1.00	52.0	0	29;75	0	n	1.00	28.5	0	15;42	0	n	1.00	36.0	0	22;50	0	n	1.00	52.0	0	31;73	0	n	1.00	35.0	0	19;51	0	n	0.98	42.0	1	27;57	1	n	ENSMUSG00000069020.10	Urm1	chr2	protein_coding	ubiquitin related modifier 1
known_NIR_11131	chr2	29731495;29732558	29732474;29732733	+	29731495	29732733	cassetteExon	ENSMUST00000149379.8	known	0.11	6.5	51	4;9	51	y	0.00	0.0	47	0;0	47	n	0.05	3.5	66	0;7	66	n	0.09	4.0	40	4;4	40	y	0.07	4.0	52	5;3	52	y	0.05	1.5	27	1;2	27	n	0.07	4.0	53	5;3	53	y	0.00	0.0	34	0;0	34	n	0.03	1.0	37	1;1	37	n	0.05	3.0	59	2;4	59	y	0.13	7.5	49	4;11	49	y	0.09	4.0	41	4;4	41	y	ENSMUSG00000069020.10	Urm1	chr2	protein_coding	ubiquitin related modifier 1
known_NIR_11132	chr2	29782288	29783050	+	29782288	29783013	A3SS	ENSMUST00000123335.8	known	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.18	2	9	2	9	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.25	2	6	2	6	n	0.00	0	14	0	14	n	ENSMUSG00000026790.20	Odf2	chr2	protein_coding	outer dense fiber of sperm tails 2
known_NIR_11133	chr2	29782288	29783456	+	29782288;29783166	29783013;29783456	ES	ENSMUST00000123335.8	known	0.00	0	9.0	0	10;8	n	0.00	0	5.5	0	5;6	n	0.00	0	12.5	0	6;19	n	0.00	0	13.5	0	4;23	n	0.00	0	12.0	0	10;14	n	0.00	0	7.5	0	10;5	n	0.00	0	10.5	0	9;12	n	0.00	0	2.5	0	4;1	n	0.21	2	7.5	2	6;9	y	0.00	0	12.5	0	11;14	n	0.00	0	6.0	0	6;6	n	0.07	1	13.5	1	14;13	n	ENSMUSG00000026790.20	Odf2	chr2	protein_coding	outer dense fiber of sperm tails 2
known_NIR_11134	chr2	29783581	29791089	+	29783524	29791089	A5SS	ENSMUST00000123335.8	known	0.50	6	6	6	6	y	0.47	7	8	7	8	y	0.50	12	12	12	12	y	0.42	10	14	10	14	y	0.73	11	4	11	4	y	0.70	7	3	7	3	y	0.64	7	4	7	4	y	0.71	5	2	5	2	n	0.42	5	7	5	7	y	0.39	9	14	9	14	y	0.73	8	3	8	3	y	0.33	5	10	5	10	y	ENSMUSG00000026790.20	Odf2	chr2	protein_coding	outer dense fiber of sperm tails 2
known_NIR_11135	chr2	29794119	29802578	+	29794119	29802581	A3SS	ENSMUST00000113767.8	known	0.14	1	6	1	6	n	0.08	1	12	1	12	n	0.06	1	16	1	16	n	0.00	0	12	0	12	n	0.19	3	13	3	13	y	0.29	4	10	4	10	y	0.20	2	8	2	8	y	0.00	0	3	0	3	n	0.25	2	6	2	6	n	0.06	1	17	1	17	n	0.00	0	8	0	8	n	0.18	4	18	4	18	y	ENSMUSG00000026790.20	Odf2	chr2	protein_coding	outer dense fiber of sperm tails 2
known_NIR_11136	chr2	29890074;29891171	29891112;29892243	+	29890074	29892243	cassetteExon	ENSMUST00000113719.9	known	0.84	26.5	5	24;29	5	y	0.67	14.0	7	13;15	7	y	0.82	53.0	12	44;62	12	y	0.62	29.5	18	23;36	18	y	0.61	37.5	24	29;46	24	y	0.69	29.0	13	23;35	13	y	0.69	31.5	14	25;38	14	y	0.63	17.0	10	9;25	10	y	0.69	22.0	10	16;28	10	y	0.82	40.0	9	37;43	9	y	0.62	22.5	14	16;29	14	y	0.61	34.5	22	35;34	22	y	ENSMUSG00000057738.15	Sptan1	chr2	protein_coding	spectrin alpha, non-erythrocytic 1
known_NIR_11137	chr2	29903850	29905601	+	29903850;29904184	29904170;29905601	ES	ENSMUST00000113719.9	known	0.86	81	13.0	81	12;14	y	0.85	58	10.0	58	10;10	y	0.94	92	6.0	92	7;5	y	0.86	85	13.5	85	12;15	y	0.89	98	12.0	98	11;13	y	0.82	40	8.5	40	8;9	y	0.84	75	14.5	75	13;16	y	0.91	43	4.0	43	4;4	y	0.90	39	4.5	39	5;4	y	0.94	94	5.5	94	6;5	y	0.87	60	9.0	60	10;8	y	0.93	81	6.0	81	6;6	y	ENSMUSG00000057738.15	Sptan1	chr2	protein_coding	spectrin alpha, non-erythrocytic 1
known_NIR_11138	chr2	29937370	29938696	-	29928438	29938696	A3SS	ENSMUST00000113711.3	known	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.00	0	18	0	18	n	0.06	1	16	1	16	n	0.00	0	40	0	40	n	0.08	1	12	1	12	n	0.13	3	20	3	20	y	0.00	0	12	0	12	n	0.00	0	17	0	17	n	0.00	0	17	0	17	n	0.00	0	19	0	19	n	0.00	0	11	0	11	n	ENSMUSG00000039715.9	Dync2i2	chr2	protein_coding	dynein 2 intermediate chain 2
known_NIR_11139	chr2	29952787	29958281	+	29952292	29958281	A5SS	ENSMUST00000134364.8	known	0.05	2	41	2	41	y	0.00	0	30	0	30	n	0.05	2	41	2	41	y	0.03	1	34	1	34	n	0.07	4	52	4	52	y	0.06	2	31	2	31	y	0.03	1	32	1	32	n	0.19	6	25	6	25	y	0.13	6	40	6	40	y	0.08	3	33	3	33	y	0.05	2	37	2	37	y	0.08	3	35	3	35	y	ENSMUSG00000054766.14	Set	chr2	protein_coding	SET nuclear oncogene
known_NIR_11140	chr2	29956905	29958281	+	29952292	29958281	A5SS	ENSMUST00000134364.8	known	0.77	136	41	136	41	y	0.80	119	30	119	30	y	0.83	199	41	199	41	y	0.82	153	34	153	34	y	0.81	228	52	228	52	y	0.77	105	31	105	31	y	0.82	148	32	148	32	y	0.77	83	25	83	25	y	0.75	119	40	119	40	y	0.84	170	33	170	33	y	0.82	164	37	164	37	y	0.87	237	35	237	35	y	ENSMUSG00000054766.14	Set	chr2	protein_coding	SET nuclear oncogene
known_NIR_11141	chr2	29956905	29958281	+	29952787	29958281	A5SS	ENSMUST00000125824.8	known	0.99	136	2	136	2	y	1.00	119	0	119	0	n	0.99	199	2	199	2	y	0.99	153	1	153	1	n	0.98	228	4	228	4	y	0.98	105	2	105	2	y	0.99	148	1	148	1	n	0.93	83	6	83	6	y	0.95	119	6	119	6	y	0.98	170	3	170	3	y	0.99	164	2	164	2	y	0.99	237	3	237	3	y	ENSMUSG00000054766.14	Set	chr2	protein_coding	SET nuclear oncogene
known_NIR_11142	chr2	29982553	29983459	-	29982553	29983501	A5SS	ENSMUST00000102865.11	known	0.09	7	69	7	69	y	0.12	10	76	10	76	y	0.19	24	101	24	101	y	0.09	6	61	6	61	y	0.10	11	94	11	94	y	0.12	11	78	11	78	y	0.08	8	87	8	87	y	0.15	10	57	10	57	y	0.05	2	40	2	40	y	0.09	9	89	9	89	y	0.00	0	72	0	72	n	0.07	6	74	6	74	y	ENSMUSG00000015335.17	Zdhhc12	chr2	protein_coding	zinc finger, DHHC domain containing 12
known_NIR_11143	chr2	30000393	30000674	-	30000432	30000674	A3SS	ENSMUST00000044751.14	known	0.98	42	1	42	1	n	1.00	21	0	21	0	n	1.00	28	0	28	0	n	0.94	34	2	34	2	y	1.00	42	0	42	0	n	1.00	18	0	18	0	n	1.00	27	0	27	0	n	1.00	16	0	16	0	n	1.00	10	0	10	0	n	1.00	25	0	25	0	n	1.00	17	0	17	0	n	1.00	20	0	20	0	n	ENSMUSG00000039686.15	Zer1	chr2	protein_coding	zyg-11 related, cell cycle regulator
known_NIR_11144	chr2	30024882	30026685	+	30024882;30025564	30025421;30026685	ES	ENSMUST00000136183.8	known	0.58	20	14.5	20	16;13	y	0.55	15	12.5	15	17;8	y	0.56	16	12.5	16	16;9	y	0.53	17	15.0	17	24;6	y	0.56	29	23.0	29	31;15	y	0.71	10	4.0	10	7;1	n	0.67	17	8.5	17	12;5	y	0.47	8	9.0	8	9;9	y	0.32	6	12.5	6	12;13	y	0.56	28	22.0	28	25;19	y	0.45	10	12.0	10	12;12	y	0.57	21	16.0	21	18;14	y	ENSMUSG00000039678.13	Tbc1d13	chr2	protein_coding	TBC1 domain family, member 13
known_NIR_11145	chr2	30026725;30026995	30026880;30027133	+	30026725	30027133	cassetteExon	ENSMUST00000136183.8	known	0.06	1.5	25	3;0	25	n	0.00	0.0	20	0;0	20	n	0.08	1.5	18	3;0	18	n	0.00	0.0	26	0;0	26	n	0.04	2.0	45	2;2	45	y	0.00	0.0	13	0;0	13	n	0.00	0.0	19	0;0	19	n	0.00	0.0	18	0;0	18	n	0.04	1.0	22	0;2	22	n	0.02	1.0	42	2;0	42	n	0.04	1.0	24	2;0	24	n	0.00	0.0	33	0;0	33	n	ENSMUSG00000039678.13	Tbc1d13	chr2	protein_coding	TBC1 domain family, member 13
known_NIR_11146	chr2	30066014	30066374	-	30066003	30066374	A3SS	ENSMUST00000142669.8	known	0.11	6	51	6	51	y	0.00	0	45	0	45	n	0.00	0	22	0	22	n	0.00	0	51	0	51	n	0.08	4	48	4	48	y	0.11	3	24	3	24	y	0.02	1	45	1	45	n	0.03	1	30	1	30	n	0.06	3	48	3	48	y	0.05	2	38	2	38	y	0.03	1	38	1	38	n	0.04	2	50	2	50	y	ENSMUSG00000039660.17	Spout1	chr2	protein_coding	SPOUT domain containing methyltransferase 1
known_NIR_11147	chr2	30077319	30078065	-	30077319;30077829	30077701;30078065	ES	ENSMUST00000044038.10	known	0.00	0	480.5	0	478;483	n	0.00	0	368.0	0	340;396	n	0.00	0	102.5	0	102;103	n	0.00	0	444.0	0	407;481	n	0.00	0	610.5	0	561;660	n	0.00	0	136.5	0	138;135	n	0.00	0	468.5	0	436;501	n	0.00	0	200.0	0	196;204	n	0.01	3	348.5	3	345;352	y	0.00	0	446.0	0	394;498	n	0.00	0	438.5	0	398;479	n	0.00	0	560.0	0	531;589	n	ENSMUSG00000039648.15	Kyat1	chr2	protein_coding	kynurenine aminotransferase 1
known_NIR_11148	chr2	30081534	30081937	-	30078376	30081937	A3SS	ENSMUST00000044038.10	known	0.22	110	389	110	389	y	0.23	83	285	83	285	y	0.14	20	124	20	124	y	0.25	118	351	118	351	y	0.19	123	531	123	531	y	0.17	26	125	26	125	y	0.21	109	415	109	415	y	0.20	47	183	47	183	y	0.26	101	293	101	293	y	0.21	101	391	101	391	y	0.19	83	348	83	348	y	0.17	105	495	105	495	y	ENSMUSG00000039648.15	Kyat1	chr2	protein_coding	kynurenine aminotransferase 1
known_NIR_11149	chr2	30082084;30082297	30082200;30084066	-	30082084	30084066	cassetteExon	ENSMUST00000044038.10	known	0.25	126.5	374	107;146	374	y	0.20	71.0	292	66;76	292	y	0.24	27.5	89	34;21	89	y	0.22	116.0	417	102;130	417	y	0.26	166.0	475	151;181	475	y	0.21	32.5	121	36;29	121	y	0.27	134.0	354	138;130	354	y	0.23	50.0	168	45;55	168	y	0.26	107.0	298	99;115	298	y	0.23	98.0	321	90;106	321	y	0.21	87.5	329	82;93	329	y	0.22	144.5	516	146;143	516	y	ENSMUSG00000039648.15	Kyat1	chr2	protein_coding	kynurenine aminotransferase 1
known_NIR_11150	chr2	30084124	30095645	-	30084124	30087969	5pMXE	ENSMUST00000113661.10	known	0.55	275	221	275	221	y	0.54	191	165	191	165	y	0.63	78	46	78	46	y	0.53	244	213	244	213	y	0.50	340	335	340	335	y	0.57	82	61	82	61	y	0.51	240	233	240	233	y	0.61	135	88	135	88	y	0.57	232	176	232	176	y	0.56	263	210	263	210	y	0.56	225	180	225	180	y	0.53	346	302	346	302	y	ENSMUSG00000039648.15	Kyat1	chr2	protein_coding	kynurenine aminotransferase 1
known_NIR_11151	chr2	30084124;30088171	30087969;30095645	-	30084124	30095645	cassetteExon	ENSMUST00000044038.10	known	0.37	160.5	275	221;100	275	y	0.39	120.0	191	165;75	191	y	0.31	35.5	78	46;25	78	y	0.43	186.5	244	213;160	244	y	0.42	244.0	340	335;153	340	y	0.38	50.0	82	61;39	82	y	0.43	184.5	240	233;136	240	y	0.35	74.0	135	88;60	135	y	0.38	142.5	232	176;109	232	y	0.37	156.5	263	210;103	263	y	0.37	130.5	225	180;81	225	y	0.42	246.0	346	302;190	346	y	ENSMUSG00000039648.15	Kyat1	chr2	protein_coding	kynurenine aminotransferase 1
known_NIR_11152	chr2	30084172	30095645	-	30084124	30095645	A3SS	ENSMUST00000044038.10	known	0.00	0	275	0	275	n	0.00	0	191	0	191	n	0.00	0	78	0	78	n	0.00	0	244	0	244	n	0.00	0	340	0	340	n	0.00	0	82	0	82	n	0.00	0	240	0	240	n	0.00	0	135	0	135	n	0.00	0	232	0	232	n	0.01	2	263	2	263	y	0.00	0	225	0	225	n	0.00	0	346	0	346	n	ENSMUSG00000039648.15	Kyat1	chr2	protein_coding	kynurenine aminotransferase 1
known_NIR_11153	chr2	30088171	30095645	-	30084172	30095645	A3SS	ENSMUST00000113662.8	known	1.00	100	0	100	0	n	1.00	75	0	75	0	n	1.00	25	0	25	0	n	1.00	160	0	160	0	n	1.00	153	0	153	0	n	1.00	39	0	39	0	n	1.00	136	0	136	0	n	1.00	60	0	60	0	n	1.00	109	0	109	0	n	0.98	103	2	103	2	y	1.00	81	0	81	0	n	1.00	190	0	190	0	n	ENSMUSG00000039648.15	Kyat1	chr2	protein_coding	kynurenine aminotransferase 1
known_NIR_11154	chr2	30156802	30159701	+	30156953	30159701	A5SS&ES	ENSMUST00000139454.3	known	0.00	0	268	0	268	n	0.00	0	198	0	198	n	0.01	3	236	3	236	y	0.00	0	365	0	365	n	0.00	0	382	0	382	n	0.00	0	132	0	132	n	0.00	0	428	0	428	n	0.00	0	244	0	244	n	0.00	0	306	0	306	n	0.00	0	423	0	423	n	0.01	3	297	3	297	y	0.00	0	368	0	368	n	ENSMUSG00000099041.2	Gm28035	chr2	protein_coding	predicted gene, 28035
known_NIR_11155	chr2	30159859	30167015	+	30164735	30167015	A5SS&ES	ENSMUST00000139454.3	known	0.00	0	280	0	280	n	0.01	2	223	2	223	y	0.02	3	155	3	155	y	0.01	3	289	3	289	y	0.01	2	355	2	355	y	0.00	0	143	0	143	n	0.00	0	404	0	404	n	0.00	0	181	0	181	n	0.00	0	233	0	233	n	0.00	1	432	1	432	n	0.00	0	271	0	271	n	0.01	4	335	4	335	y	ENSMUSG00000099041.2	Gm28035	chr2	protein_coding	predicted gene, 28035
known_NIR_11156	chr2	30159859;30164735	30164482;30167015	+	30159859	30167015	cassetteExon	ENSMUST00000085290.4	known	1.00	305.5	0	331;280	0	n	0.99	244.5	2	266;223	2	y	0.98	185.5	3	216;155	3	y	0.99	345.0	3	401;289	3	y	0.99	393.0	2	431;355	2	y	1.00	145.5	0	148;143	0	n	1.00	443.5	0	483;404	0	n	1.00	199.0	0	217;181	0	n	1.00	271.0	0	309;233	0	n	1.00	438.0	1	444;432	1	n	1.00	311.0	0	351;271	0	n	0.99	379.0	4	423;335	4	y	ENSMUSG00000079484.13	Phyhd1	chr2	protein_coding	phytanoyl-CoA dioxygenase domain containing 1
known_NIR_11157	chr2	30167070	30167635	+	30167070;30167222	30167160;30167635	ES	ENSMUST00000139454.3	known	0.00	0	207.5	0	221;194	n	0.00	0	201.5	0	222;181	n	0.08	11	132.0	11	130;134	y	0.01	2	230.0	2	240;220	y	0.01	5	329.0	5	331;327	y	0.11	13	102.5	13	97;108	y	0.02	7	321.0	7	315;327	y	0.02	4	159.5	4	161;158	y	0.00	0	197.5	0	198;197	n	0.01	4	311.5	4	328;295	y	0.02	4	247.0	4	249;245	y	0.02	4	245.0	4	245;245	y	ENSMUSG00000099041.2	Gm28035	chr2	protein_coding	predicted gene, 28035
known_NIR_11158	chr2	30167656	30169407	+	30167656	30169967	A3SS	ENSMUST00000139454.3	known	0.07	12	165	12	165	y	0.10	17	153	17	153	y	0.05	7	121	7	121	y	0.11	24	194	24	194	y	0.08	23	263	23	263	y	0.03	3	95	3	95	y	0.08	24	281	24	281	y	0.11	13	110	13	110	y	0.08	16	183	16	183	y	0.08	22	250	22	250	y	0.12	30	219	30	219	y	0.06	12	198	12	198	y	ENSMUSG00000099041.2	Gm28035	chr2	protein_coding	predicted gene, 28035
known_NIR_11159	chr2	30167656	30169967	+	30164735	30169967	A5SS	ENSMUST00000150695.8	known	0.96	165	6	165	6	y	0.97	153	5	153	5	y	0.99	121	1	121	1	n	0.97	194	5	194	5	y	0.99	263	3	263	3	y	0.99	95	1	95	1	n	0.97	281	8	281	8	y	1.00	110	0	110	0	n	0.98	183	3	183	3	y	0.98	250	6	250	6	y	0.98	219	5	219	5	y	0.95	198	10	198	10	y	ENSMUSG00000079484.13	Phyhd1	chr2	protein_coding	phytanoyl-CoA dioxygenase domain containing 1
known_NIR_11160	chr2	30192057	30193672	+	30192057	30194069	A3SS	ENSMUST00000148969.8	known	0.00	0	1	0	1	n	1.00	3	0	3	0	n	0.50	4	4	4	4	n	0.00	0	4	0	4	n	0.21	3	11	3	11	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.38	3	5	3	5	n	0.25	1	3	1	3	n	0.60	3	2	3	2	n	0.10	1	9	1	9	n	ENSMUSG00000052533.15	Nup188	chr2	protein_coding	nucleoporin 188
known_NIR_11161	chr2	30235951	30236365	-	30235951	30236071	5pMXE	ENSMUST00000142689.2	known	0.95	42	2	42	2	y	0.94	47	3	47	3	y	0.94	46	3	46	3	y	0.95	55	3	55	3	y	0.89	58	7	58	7	y	0.94	29	2	29	2	y	0.85	56	10	56	10	y	0.88	29	4	29	4	y	0.89	41	5	41	5	y	0.83	76	16	76	16	y	0.86	63	10	63	10	y	0.83	58	12	58	12	y	ENSMUSG00000026860.17	Sh3glb2	chr2	protein_coding	SH3-domain GRB2-like endophilin B2
known_NIR_11162	chr2	30235951	30236365	-	30235951;30236085	30236071;30236365	ES	ENSMUST00000100215.11	known	0.94	42	2.5	42	2;3	y	0.93	47	3.5	47	3;4	y	0.93	46	3.5	46	3;4	y	0.96	55	2.5	55	3;2	y	0.88	58	8.0	58	7;9	y	0.94	29	2.0	29	2;2	y	0.84	56	11.0	56	10;12	y	0.91	29	3.0	29	4;2	y	0.90	41	4.5	41	5;4	y	0.86	76	12.0	76	16;8	y	0.87	63	9.5	63	10;9	y	0.83	58	11.5	58	12;11	y	ENSMUSG00000026860.17	Sh3glb2	chr2	protein_coding	SH3-domain GRB2-like endophilin B2
known_NIR_11163	chr2	30237116	30240300	-	30237116;30238629	30238567;30240300	ES	ENSMUST00000100215.11	known	0.02	1	47.5	1	51;44	n	0.00	0	49.0	0	56;42	n	0.02	1	41.0	1	52;30	n	0.00	0	39.5	0	39;40	n	0.00	0	39.0	0	38;40	n	0.05	1	17.5	1	15;20	n	0.05	3	53.0	3	51;55	y	0.00	0	16.0	0	13;19	n	0.14	7	44.5	7	47;42	y	0.04	3	71.0	3	77;65	y	0.07	3	40.0	3	45;35	y	0.00	0	51.0	0	56;46	n	ENSMUSG00000026860.17	Sh3glb2	chr2	protein_coding	SH3-domain GRB2-like endophilin B2
known_NIR_11164	chr2	30237116	30240300	-	30238629	30240300	3pMXE	ENSMUST00000140899.8	known	0.02	1	44	1	44	n	0.00	0	42	0	42	n	0.03	1	30	1	30	n	0.00	0	40	0	40	n	0.00	0	40	0	40	n	0.05	1	20	1	20	n	0.05	3	55	3	55	y	0.00	0	19	0	19	n	0.14	7	42	7	42	y	0.04	3	65	3	65	y	0.08	3	35	3	35	y	0.00	0	46	0	46	n	ENSMUSG00000026860.17	Sh3glb2	chr2	protein_coding	SH3-domain GRB2-like endophilin B2
known_NIR_11165	chr2	30238629	30240300	-	30239616	30240300	3pMXE	ENSMUST00000151145.8	known	0.90	44	5	44	5	y	0.93	42	3	42	3	y	0.97	30	1	30	1	n	0.95	40	2	40	2	y	0.93	40	3	40	3	y	1.00	20	0	20	0	n	0.95	55	3	55	3	y	0.95	19	1	19	1	n	0.91	42	4	42	4	y	0.92	65	6	65	6	y	0.95	35	2	35	2	y	0.92	46	4	46	4	y	ENSMUSG00000026860.17	Sh3glb2	chr2	protein_coding	SH3-domain GRB2-like endophilin B2
known_NIR_11166	chr2	30239616	30240300	-	30237116	30240300	A3SS	ENSMUST00000113620.10	known	0.83	5	1	5	1	n	1.00	3	0	3	0	n	0.50	1	1	1	1	n	1.00	2	0	2	0	n	1.00	3	0	3	0	n	0.00	0	1	0	1	n	0.50	3	3	3	3	n	1.00	1	0	1	0	n	0.36	4	7	4	7	y	0.67	6	3	6	3	n	0.40	2	3	2	3	n	1.00	4	0	4	0	n	ENSMUSG00000026860.17	Sh3glb2	chr2	protein_coding	SH3-domain GRB2-like endophilin B2
known_NIR_11167	chr2	30244993	30245248	-	30244993	30245273	A5SS	ENSMUST00000100215.11	known	0.00	0	53	0	53	n	0.00	0	51	0	51	n	0.00	0	28	0	28	n	0.00	0	53	0	53	n	0.01	1	76	1	76	n	0.06	1	17	1	17	n	0.00	0	73	0	73	n	0.02	1	40	1	40	n	0.00	0	42	0	42	n	0.03	2	71	2	71	y	0.00	0	48	0	48	n	0.02	1	53	1	53	n	ENSMUSG00000026860.17	Sh3glb2	chr2	protein_coding	SH3-domain GRB2-like endophilin B2
known_NIR_11168	chr2	30254559	30257564	+	30254317	30257564	A5SS	ENSMUST00000077977.14	known	0.23	10	33	10	33	y	0.07	2	28	2	28	y	0.03	1	36	1	36	n	0.19	14	58	14	58	y	0.12	9	67	9	67	y	0.09	3	32	3	32	y	0.16	13	70	13	70	y	0.03	1	30	1	30	n	0.14	6	36	6	36	y	0.18	17	76	17	76	y	0.11	5	40	5	40	y	0.10	4	36	4	36	y	ENSMUSG00000026858.19	Miga2	chr2	protein_coding	mitoguardin 2
known_NIR_11169	chr2	30254587	30257564	+	30254317	30257564	A5SS	ENSMUST00000077977.14	known	0.08	3	33	3	33	y	0.10	3	28	3	28	y	0.08	3	36	3	36	y	0.05	3	58	3	58	y	0.04	3	67	3	67	y	0.00	0	32	0	32	n	0.09	7	70	7	70	y	0.06	2	30	2	30	y	0.10	4	36	4	36	y	0.11	9	76	9	76	y	0.15	7	40	7	40	y	0.05	2	36	2	36	y	ENSMUSG00000026858.19	Miga2	chr2	protein_coding	mitoguardin 2
known_NIR_11170	chr2	30254587	30257564	+	30254559	30257564	A5SS	ENSMUST00000142801.8	known	0.23	3	10	3	10	y	0.60	3	2	3	2	n	0.75	3	1	3	1	n	0.18	3	14	3	14	y	0.25	3	9	3	9	y	0.00	0	3	0	3	n	0.35	7	13	7	13	y	0.67	2	1	2	1	n	0.40	4	6	4	6	y	0.35	9	17	9	17	y	0.58	7	5	7	5	y	0.33	2	4	2	4	n	ENSMUSG00000026858.19	Miga2	chr2	protein_coding	mitoguardin 2
known_NIR_11171	chr2	30272089	30272978	+	30272085	30272978	A5SS	ENSMUST00000077977.14	known	0.01	1	71	1	71	n	0.02	1	65	1	65	n	0.04	2	45	2	45	y	0.02	2	87	2	87	y	0.00	0	141	0	141	n	0.00	0	50	0	50	n	0.01	1	117	1	117	n	0.00	0	76	0	76	n	0.04	2	50	2	50	y	0.02	2	120	2	120	y	0.01	1	82	1	82	n	0.00	0	73	0	73	n	ENSMUSG00000026858.19	Miga2	chr2	protein_coding	mitoguardin 2
known_NIR_11172	chr2	30273031	30273941	+	30273031;30273718	30273602;30273941	ES	ENSMUST00000077977.14	known	0.01	1	79.5	1	80;79	n	0.03	2	63.0	2	66;60	y	0.19	13	55.0	13	60;50	y	0.02	2	117.0	2	101;133	y	0.04	5	125.5	5	135;116	y	0.02	1	46.5	1	51;42	n	0.03	4	119.5	4	130;109	y	0.00	0	66.5	0	70;63	n	0.00	0	56.0	0	57;55	n	0.01	2	134.5	2	139;130	y	0.00	0	96.5	0	98;95	n	0.01	1	81.5	1	85;78	n	ENSMUSG00000026858.19	Miga2	chr2	protein_coding	mitoguardin 2
known_NIR_11173	chr2	30282524;30283865	30283659;30285671	+	30282524	30285671	cassetteExon	ENSMUST00000028209.15	known	0.00	0.0	51	0;0	51	n	0.00	0.0	32	0;0	32	n	0.00	0.0	50	0;0	50	n	0.01	0.5	44	0;1	44	n	0.06	3.5	57	5;2	57	y	0.04	1.0	25	1;1	25	n	0.03	1.5	54	0;3	54	n	0.01	0.5	33	0;1	33	n	0.06	1.5	24	2;1	24	n	0.00	0.0	42	0;0	42	n	0.00	0.0	40	0;0	40	n	0.01	0.5	35	0;1	35	n	ENSMUSG00000026856.15	Dolpp1	chr2	protein_coding	dolichyl pyrophosphate phosphatase 1
known_NIR_11174	chr2	30285771	30286165	+	30285771	30285989	A3SS	ENSMUST00000156984.8	known	0.00	0	42	0	42	n	0.00	0	34	0	34	n	0.00	0	48	0	48	n	0.00	0	42	0	42	n	0.00	0	56	0	56	n	0.04	1	23	1	23	n	0.00	0	42	0	42	n	0.00	0	27	0	27	n	0.05	2	41	2	41	y	0.00	0	52	0	52	n	0.00	0	41	0	41	n	0.00	0	51	0	51	n	ENSMUSG00000026856.15	Dolpp1	chr2	protein_coding	dolichyl pyrophosphate phosphatase 1
known_NIR_11175	chr2	30285771	30286165	+	30285771;30286073	30285989;30286165	ES	ENSMUST00000028209.15	known	0.00	0	35.0	0	42;28	n	0.00	0	33.0	0	34;32	n	0.00	0	47.0	0	48;46	n	0.00	0	48.0	0	42;54	n	0.00	0	53.0	0	56;50	n	0.06	1	16.5	1	23;10	n	0.00	0	44.0	0	42;46	n	0.00	0	29.0	0	27;31	n	0.05	2	37.5	2	41;34	y	0.00	0	55.0	0	52;58	n	0.00	0	39.0	0	41;37	n	0.00	0	45.5	0	51;40	n	ENSMUSG00000026856.15	Dolpp1	chr2	protein_coding	dolichyl pyrophosphate phosphatase 1
known_NIR_11176	chr2	30293653	30294540	-	30293638	30294540	A3SS	ENSMUST00000102855.8	known	0.00	0	43	0	43	n	0.03	1	33	1	33	n	0.03	2	76	2	76	y	0.00	0	33	0	33	n	0.01	1	116	1	116	n	0.03	2	59	2	59	y	0.01	2	146	2	146	y	0.03	2	68	2	68	y	0.04	1	22	1	22	n	0.03	2	65	2	65	y	0.02	1	60	1	60	n	0.06	2	33	2	33	y	ENSMUSG00000026853.16	Crat	chr2	protein_coding	carnitine acetyltransferase
known_NIR_11177	chr2	30303258	30305207	-	30303258	30303872	A5SS&ES	ENSMUST00000134120.2	known	1.00	43	0	43	0	n	0.88	37	5	37	5	y	0.94	96	6	96	6	y	0.91	30	3	30	3	y	0.93	160	12	160	12	y	0.92	99	9	99	9	y	0.95	140	8	140	8	y	0.91	86	9	86	9	y	0.89	17	2	17	2	y	0.96	97	4	97	4	y	0.96	48	2	48	2	y	0.96	44	2	44	2	y	ENSMUSG00000026853.16	Crat	chr2	protein_coding	carnitine acetyltransferase
known_NIR_11178	chr2	30303258	30305207	-	30303258	30305324	A5SS	ENSMUST00000102855.8	known	0.84	43	8	43	8	y	0.90	37	4	37	4	y	0.86	96	15	96	15	y	0.83	30	6	30	6	y	0.94	160	10	160	10	y	0.88	99	14	99	14	y	0.70	140	59	140	59	y	0.93	86	6	86	6	y	0.85	17	3	17	3	y	0.92	97	8	97	8	y	0.86	48	8	48	8	y	0.85	44	8	44	8	y	ENSMUSG00000026853.16	Crat	chr2	protein_coding	carnitine acetyltransferase
known_NIR_11179	chr2	30303258	30305207	-	30303258;30304008	30303872;30305207	ES	ENSMUST00000132981.9	known	1.00	43	0.0	43	0;0	n	0.90	37	4.0	37	5;3	y	0.94	96	6.0	96	6;6	y	0.95	30	1.5	30	3;0	n	0.95	160	9.0	160	12;6	y	0.93	99	7.0	99	9;5	y	0.95	140	7.0	140	8;6	y	0.92	86	7.5	86	9;6	y	0.94	17	1.0	17	2;0	n	0.94	97	6.0	97	4;8	y	0.95	48	2.5	48	2;3	y	0.94	44	3.0	44	2;4	y	ENSMUSG00000026853.16	Crat	chr2	protein_coding	carnitine acetyltransferase
known_NIR_11180	chr2	30303258;30304008	30303872;30305324	-	30303258	30305324	cassetteExon	ENSMUST00000102855.8	known	0.00	0.0	8	0;0	8	n	0.38	2.5	4	5;0	4	n	0.21	4.0	15	6;2	15	y	0.20	1.5	6	3;0	6	n	0.38	6.0	10	12;0	10	n	0.32	6.5	14	9;4	14	y	0.07	4.5	59	8;1	59	n	0.43	4.5	6	9;0	6	n	0.25	1.0	3	2;0	3	n	0.27	3.0	8	4;2	8	y	0.11	1.0	8	2;0	8	n	0.20	2.0	8	2;2	8	y	ENSMUSG00000026853.16	Crat	chr2	protein_coding	carnitine acetyltransferase
known_NIR_11181	chr2	30304008	30305324	-	30304008	30305207	5pMXE	ENSMUST00000132981.9	known	-	-	-	-	-	-	0.00	0	3	0	3	n	0.25	2	6	2	6	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.44	4	5	4	5	n	0.14	1	6	1	6	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.20	2	8	2	8	y	0.00	0	3	0	3	n	0.33	2	4	2	4	n	ENSMUSG00000026853.16	Crat	chr2	protein_coding	carnitine acetyltransferase
known_NIR_11182	chr2	30304834	30305324	-	30303258	30305324	A3SS	ENSMUST00000102855.8	known	0.11	1	8	1	8	n	0.00	0	4	0	4	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.17	2	10	2	10	y	0.12	2	14	2	14	y	0.03	2	59	2	59	y	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	ENSMUSG00000026853.16	Crat	chr2	protein_coding	carnitine acetyltransferase
known_NIR_11183	chr2	30331990	30333302	+	30329776	30333302	A5SS	ENSMUST00000042055.10	known	0.01	1	83	1	83	n	0.00	0	61	0	61	n	0.01	1	98	1	98	n	0.01	1	78	1	78	n	0.00	0	102	0	102	n	0.00	0	55	0	55	n	0.03	4	121	4	121	y	0.02	1	56	1	56	n	0.03	2	57	2	57	y	0.00	0	102	0	102	n	0.03	3	84	3	84	y	0.04	4	98	4	98	y	ENSMUSG00000039515.12	Ptpa	chr2	protein_coding	protein phosphatase 2 protein activator
known_NIR_11184	chr2	30698377	30709641	+	30698095	30709641	A5SS	ENSMUST00000041830.10	known	0.00	0	40	0	40	n	0.00	0	35	0	35	n	0.02	1	51	1	51	n	0.00	0	24	0	24	n	0.05	2	39	2	39	y	0.00	0	27	0	27	n	0.00	0	45	0	45	n	0.00	0	20	0	20	n	0.00	0	18	0	18	n	0.00	0	26	0	26	n	0.10	3	27	3	27	y	0.00	0	25	0	25	n	ENSMUSG00000026857.10	Ntmt1	chr2	protein_coding	N-terminal Xaa-Pro-Lys N-methyltransferase 1
known_NIR_11185	chr2	30709780	30710461	+	30709844	30710461	A5SS	ENSMUST00000041830.10	known	0.11	2	17	2	17	y	0.15	3	17	3	17	y	0.12	6	42	6	42	y	0.17	4	20	4	20	y	0.16	7	37	7	37	y	0.08	1	12	1	12	n	0.28	7	18	7	18	y	0.06	1	16	1	16	n	0.00	0	20	0	20	n	0.11	4	31	4	31	y	0.04	1	24	1	24	n	0.16	4	21	4	21	y	ENSMUSG00000026857.10	Ntmt1	chr2	protein_coding	N-terminal Xaa-Pro-Lys N-methyltransferase 1
known_NIR_11186	chr2	30844029	30845780	+	30844029	30845790	A3SS	ENSMUST00000028199.12	known	0.03	1	39	1	39	n	0.00	0	28	0	28	n	0.03	2	64	2	64	y	0.00	0	47	0	47	n	0.03	2	60	2	60	y	0.08	2	24	2	24	y	0.03	2	56	2	56	y	0.00	0	42	0	42	n	0.05	2	42	2	42	y	0.04	2	51	2	51	y	0.02	1	52	1	52	n	0.00	0	39	0	39	n	ENSMUSG00000026848.15	Tor1b	chr2	protein_coding	torsin family 1, member B
known_NIR_11187	chr2	30926269	30926554	-	30926266	30926554	A3SS	ENSMUST00000073879.12	known	0.27	6	16	6	16	y	0.12	3	22	3	22	y	0.06	1	17	1	17	n	0.22	5	18	5	18	y	0.21	8	31	8	31	y	0.00	0	9	0	9	n	0.03	1	36	1	36	n	0.00	0	17	0	17	n	0.12	3	21	3	21	y	0.05	2	42	2	42	y	0.23	5	17	5	17	y	0.32	8	17	8	17	y	ENSMUSG00000075415.14	Fnbp1	chr2	protein_coding	formin binding protein 1
known_NIR_11188	chr2	30930526;30934908	30934894;30942997	-	30930526	30942997	cassetteExon	ENSMUST00000113559.10	known	0.20	0.5	2	1;0	2	n	0.12	1.0	7	1;1	7	n	0.00	0.0	4	0;0	4	n	0.00	0.0	10	0;0	10	n	0.16	2.5	13	4;1	13	n	0.00	0.0	2	0;0	2	n	0.38	5.0	8	6;4	8	y	0.23	1.5	5	2;1	5	n	-	-	-	-	-	-	0.31	4.5	10	6;3	10	y	0.47	4.5	5	5;4	5	y	0.21	3.0	11	5;1	11	n	ENSMUSG00000075415.14	Fnbp1	chr2	protein_coding	formin binding protein 1
known_NIR_11189	chr2	30930526;30934908	30934894;30944036	-	30930526	30944036	cassetteExon	ENSMUST00000073879.12	known	0.07	1.0	14	1;1	14	n	0.08	0.5	6	1;0	6	n	0.00	0.0	1	0;0	1	n	0.00	0.0	10	0;0	10	n	0.18	2.0	9	4;0	9	n	-	-	-	-	-	-	0.44	4.0	5	6;2	5	y	0.60	1.5	1	2;1	1	n	0.00	0.0	10	0;0	10	n	0.47	4.5	5	6;3	5	y	0.28	3.5	9	5;2	9	y	0.37	3.5	6	5;2	6	y	ENSMUSG00000075415.14	Fnbp1	chr2	protein_coding	formin binding protein 1
known_NIR_11190	chr2	30930526;30934908	30934894;30944036	-	30930526;30943179	30942997;30944036	MXE	ENSMUST00000100208.9	known	0.50	1.0	1.0	1;1	2;0	n	0.10	0.5	4.5	1;0	7;2	n	0.00	0.0	4.0	0;0	4;4	n	0.00	0.0	6.0	0;0	10;2	n	0.21	2.0	7.5	4;0	13;2	n	0.00	0.0	1.5	0;0	2;1	n	0.44	4.0	5.0	6;2	8;2	y	0.38	1.5	2.5	2;1	5;0	n	-	-	-	-	-	-	0.36	4.5	8.0	6;3	10;6	y	0.54	3.5	3.0	5;2	5;1	n	0.33	3.5	7.0	5;2	11;3	y	ENSMUSG00000075415.14	Fnbp1	chr2	protein_coding	formin binding protein 1
known_NIR_11191	chr2	30930526;30943092	30942997;30944036	-	30930526	30944036	cassetteExon	ENSMUST00000073879.12	known	0.07	1.0	14	2;0	14	n	0.40	4.0	6	7;1	6	n	0.67	2.0	1	4;0	1	n	0.33	5.0	10	10;0	10	n	0.44	7.0	9	13;1	9	n	1.00	1.0	0	2;0	0	n	0.50	5.0	5	8;2	5	y	0.71	2.5	1	5;0	1	n	0.00	0.0	10	0;0	10	n	0.52	5.5	5	10;1	5	n	0.22	2.5	9	5;0	9	n	0.50	6.0	6	11;1	6	n	ENSMUSG00000075415.14	Fnbp1	chr2	protein_coding	formin binding protein 1
known_NIR_11192	chr2	30930526;30943092	30942997;30944036	-	30930526;30934908	30934894;30944036	MXE	ENSMUST00000100207.9	known	0.50	1.0	1.0	2;0	1;1	n	0.89	4.0	0.5	7;1	1;0	n	1.00	2.0	0.0	4;0	0;0	n	1.00	5.0	0.0	10;0	0;0	n	0.78	7.0	2.0	13;1	4;0	n	1.00	1.0	0.0	2;0	0;0	n	0.56	5.0	4.0	8;2	6;2	y	0.62	2.5	1.5	5;0	2;1	n	-	-	-	-	-	-	0.55	5.5	4.5	10;1	6;3	n	0.42	2.5	3.5	5;0	5;2	n	0.63	6.0	3.5	11;1	5;2	n	ENSMUSG00000075415.14	Fnbp1	chr2	protein_coding	formin binding protein 1
known_NIR_11193	chr2	30930526;30943179	30942997;30944036	-	30930526	30944036	cassetteExon	ENSMUST00000073879.12	known	0.07	1.0	14	2;0	14	n	0.43	4.5	6	7;2	6	y	0.80	4.0	1	4;4	1	n	0.38	6.0	10	10;2	10	y	0.45	7.5	9	13;2	9	y	1.00	1.5	0	2;1	0	n	0.50	5.0	5	8;2	5	y	0.71	2.5	1	5;0	1	n	0.00	0.0	10	0;0	10	n	0.62	8.0	5	10;6	5	y	0.25	3.0	9	5;1	9	n	0.54	7.0	6	11;3	6	y	ENSMUSG00000075415.14	Fnbp1	chr2	protein_coding	formin binding protein 1
known_NIR_11194	chr2	30934908	30944036	-	30934908;30943179	30942997;30944036	ES	ENSMUST00000113560.8	known	1.00	1	0.0	1	0;0	n	0.00	0	1.5	0	1;2	n	0.00	0	2.0	0	0;4	n	0.00	0	1.0	0	0;2	n	0.00	0	1.5	0	1;2	n	0.00	0	0.5	0	0;1	n	0.40	2	3.0	2	4;2	n	0.67	1	0.5	1	1;0	n	-	-	-	-	-	-	0.40	3	4.5	3	3;6	y	0.44	2	2.5	2	4;1	n	0.50	2	2.0	2	1;3	n	ENSMUSG00000075415.14	Fnbp1	chr2	protein_coding	formin binding protein 1
known_NIR_11195	chr2	31041262	31041994	-	31041262	31042156	A5SS	ENSMUST00000148230.2	known	1.00	9	0	9	0	n	0.91	10	1	10	1	n	1.00	20	0	20	0	n	0.90	9	1	9	1	n	0.86	12	2	12	2	y	1.00	3	0	3	0	n	0.93	28	2	28	2	y	1.00	10	0	10	0	n	1.00	7	0	7	0	n	0.93	13	1	13	1	n	0.56	9	7	9	7	y	0.64	9	5	9	5	y	ENSMUSG00000087269.2	D330023K18Rik	chr2	lncRNA	RIKEN cDNA D330023K18 gene
known_NIR_11196	chr2	31075780	31078695	+	31075618	31078695	A5SS	ENSMUST00000056433.7	known	0.00	0	26	0	26	n	0.00	0	19	0	19	n	0.00	0	35	0	35	n	0.10	2	19	2	19	y	0.00	0	40	0	40	n	0.00	0	21	0	21	n	0.00	0	36	0	36	n	0.00	0	23	0	23	n	0.00	0	24	0	24	n	0.00	0	36	0	36	n	0.00	0	24	0	24	n	0.00	0	31	0	31	n	ENSMUSG00000000194.14	Gpr107	chr2	protein_coding	G protein-coupled receptor 107
known_NIR_11197	chr2	31473272	31482478	+	31473272	31482475	A3SS	ENSMUST00000113482.8	known	0.00	0	17	0	17	n	0.00	0	21	0	21	n	0.00	0	28	0	28	n	0.05	1	18	1	18	n	0.16	5	26	5	26	y	0.08	1	11	1	11	n	0.12	3	21	3	21	y	0.23	3	10	3	10	y	0.10	2	18	2	18	y	0.09	3	31	3	31	y	0.13	2	13	2	13	y	0.05	2	41	2	41	y	ENSMUSG00000026843.16	Fubp3	chr2	protein_coding	far upstream element (FUSE) binding protein 3
known_NIR_11198	chr2	31482508	31484860	+	31482508	31484855	A3SS	ENSMUST00000113482.8	known	0.00	0	12	0	12	n	0.00	0	17	0	17	n	0.00	0	27	0	27	n	0.00	0	15	0	15	n	0.00	0	23	0	23	n	0.00	0	7	0	7	n	0.11	2	16	2	16	y	0.00	0	11	0	11	n	0.00	0	17	0	17	n	0.00	0	29	0	29	n	0.08	1	12	1	12	n	0.00	0	25	0	25	n	ENSMUSG00000026843.16	Fubp3	chr2	protein_coding	far upstream element (FUSE) binding protein 3
known_NIR_11199	chr2	31502570	31503043	+	31502570;31502920	31502849;31503043	ES	ENSMUST00000113482.8	known	0.00	0	21.0	0	22;20	n	0.00	0	20.5	0	18;23	n	0.00	0	38.5	0	36;41	n	0.00	0	29.5	0	26;33	n	0.00	0	46.5	0	48;45	n	0.00	0	23.5	0	30;17	n	0.00	0	31.0	0	32;30	n	0.00	0	19.5	0	22;17	n	0.06	2	29.5	2	29;30	y	0.00	0	32.5	0	38;27	n	0.00	0	30.0	0	34;26	n	0.00	0	42.5	0	50;35	n	ENSMUSG00000026843.16	Fubp3	chr2	protein_coding	far upstream element (FUSE) binding protein 3
known_NIR_11200	chr2	31503119	31505510	+	31503119;31504794	31504723;31505510	ES	ENSMUST00000113482.8	known	0.08	2	22.5	2	31;14	y	0.04	1	25.5	1	29;22	n	0.18	8	35.5	8	42;29	y	0.04	1	26.0	1	28;24	n	0.18	9	40.0	9	41;39	y	0.00	0	20.5	0	20;21	n	0.15	5	29.0	5	28;30	y	0.07	1	14.0	1	12;16	n	0.07	2	26.5	2	37;16	y	0.05	2	37.5	2	35;40	y	0.08	3	33.5	3	42;25	y	0.10	4	38.0	4	40;36	y	ENSMUSG00000026843.16	Fubp3	chr2	protein_coding	far upstream element (FUSE) binding protein 3
known_NIR_11201	chr2	31503119	31505510	+	31504794	31505510	5pMXE	ENSMUST00000130578.3	known	0.12	2	14	2	14	y	0.04	1	22	1	22	n	0.22	8	29	8	29	y	0.04	1	24	1	24	n	0.19	9	39	9	39	y	0.00	0	21	0	21	n	0.14	5	30	5	30	y	0.06	1	16	1	16	n	0.11	2	16	2	16	y	0.05	2	40	2	40	y	0.11	3	25	3	25	y	0.10	4	36	4	36	y	ENSMUSG00000026843.16	Fubp3	chr2	protein_coding	far upstream element (FUSE) binding protein 3
known_NIR_11202	chr2	31562598	31564527	+	31562585	31564527	A5SS	ENSMUST00000038474.14	known	0.05	2	39	2	39	y	0.00	0	28	0	28	n	0.16	8	42	8	42	y	0.03	2	60	2	60	y	0.10	6	56	6	56	y	0.14	3	19	3	19	y	0.02	1	51	1	51	n	0.05	1	19	1	19	n	0.03	1	30	1	30	n	0.06	4	68	4	68	y	0.00	0	40	0	40	n	0.13	6	41	6	41	y	ENSMUSG00000039356.16	Exosc2	chr2	protein_coding	exosome component 2
known_NIR_11203	chr2	31565916	31566677	+	31565916	31566680	A3SS	ENSMUST00000038474.14	known	0.00	0	24	0	24	n	0.00	0	16	0	16	n	0.00	0	32	0	32	n	0.00	0	32	0	32	n	0.05	2	42	2	42	y	0.00	0	11	0	11	n	0.00	0	26	0	26	n	0.00	0	9	0	9	n	0.00	0	28	0	28	n	0.00	0	33	0	33	n	0.00	0	33	0	33	n	0.00	0	40	0	40	n	ENSMUSG00000039356.16	Exosc2	chr2	protein_coding	exosome component 2
known_NIR_11204	chr2	31579954	31668346	+	31579954	31585761	3pMXE	ENSMUST00000146537.2	known	1.00	7	0	7	0	n	1.00	3	0	3	0	n	0.86	18	3	18	3	y	1.00	5	0	5	0	n	0.76	16	5	16	5	y	1.00	2	0	2	0	n	0.83	5	1	5	1	n	1.00	7	0	7	0	n	1.00	10	0	10	0	n	0.90	9	1	9	1	n	1.00	6	0	6	0	n	0.71	15	6	15	6	y	ENSMUSG00000026842.17	Abl1	chr2	protein_coding	c-abl oncogene 1, non-receptor tyrosine kinase
known_NIR_11205	chr2	31579954;31585904	31585761;31668346	+	31579954	31668346	cassetteExon	ENSMUST00000075759.13	known	0.00	0.0	7	0;0	7	n	0.00	0.0	3	0;0	3	n	0.10	2.0	18	3;1	18	n	0.00	0.0	5	0;0	5	n	0.22	4.5	16	5;4	16	y	0.00	0.0	2	0;0	2	n	0.09	0.5	5	1;0	5	n	0.18	1.5	7	0;3	7	n	0.00	0.0	10	0;0	10	n	0.05	0.5	9	1;0	9	n	0.08	0.5	6	0;1	6	n	0.19	3.5	15	6;1	15	n	ENSMUSG00000026842.17	Abl1	chr2	protein_coding	c-abl oncogene 1, non-receptor tyrosine kinase
known_NIR_11206	chr2	31650127	31668346	+	31579954	31668346	A5SS	ENSMUST00000075759.13	known	0.42	5	7	5	7	y	0.40	2	3	2	3	n	0.28	7	18	7	18	y	0.50	5	5	5	5	y	0.16	3	16	3	16	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.41	7	10	7	10	y	0.31	4	9	4	9	y	0.45	5	6	5	6	y	0.40	10	15	10	15	y	ENSMUSG00000026842.17	Abl1	chr2	protein_coding	c-abl oncogene 1, non-receptor tyrosine kinase
known_NIR_11207	chr2	31928184	31929332	+	31928184	31929335	A3SS	ENSMUST00000065398.13	known	0.82	18	4	18	4	y	0.81	21	5	21	5	y	0.71	20	8	20	8	y	0.74	14	5	14	5	y	0.79	27	7	27	7	y	0.82	9	2	9	2	y	0.86	31	5	31	5	y	1.00	9	0	9	0	n	0.79	15	4	15	4	y	0.82	28	6	28	6	y	0.93	28	2	28	2	y	0.82	9	2	9	2	y	ENSMUSG00000001855.16	Nup214	chr2	protein_coding	nucleoporin 214
known_NIR_11208	chr2	32102303	32102899	+	32102303	32106058	A3SS	ENSMUST00000036691.14	known	0.44	7	9	7	9	y	0.56	5	4	5	4	n	0.14	7	43	7	43	y	0.32	7	15	7	15	y	0.27	10	27	10	27	y	0.27	8	22	8	22	y	0.30	8	19	8	19	y	0.38	9	15	9	15	y	0.19	4	17	4	17	y	0.33	11	22	11	22	y	0.28	8	21	8	21	y	0.23	9	31	9	31	y	ENSMUSG00000039262.17	Prrc2b	chr2	protein_coding	proline-rich coiled-coil 2B
known_NIR_11209	chr2	32102303	32106058	+	32102303;32104959	32102899;32106058	ES	ENSMUST00000069817.15	known	0.58	9	6.5	9	7;6	y	0.44	4	5.0	4	5;5	y	0.84	43	8.0	43	7;9	y	0.62	15	9.0	15	7;11	y	0.66	27	14.0	27	10;18	y	0.85	22	4.0	22	8;0	n	0.67	19	9.5	19	8;11	y	0.67	15	7.5	15	9;6	y	0.76	17	5.5	17	4;7	y	0.66	22	11.5	22	11;12	y	0.75	21	7.0	21	8;6	y	0.73	31	11.5	31	9;14	y	ENSMUSG00000039262.17	Prrc2b	chr2	protein_coding	proline-rich coiled-coil 2B
known_NIR_11210	chr2	32104959	32106058	+	32102303	32106058	A5SS	ENSMUST00000036691.14	known	0.40	6	9	6	9	y	0.56	5	4	5	4	n	0.17	9	43	9	43	y	0.42	11	15	11	15	y	0.40	18	27	18	27	y	0.00	0	22	0	22	n	0.37	11	19	11	19	y	0.29	6	15	6	15	y	0.29	7	17	7	17	y	0.35	12	22	12	22	y	0.22	6	21	6	21	y	0.31	14	31	14	31	y	ENSMUSG00000039262.17	Prrc2b	chr2	protein_coding	proline-rich coiled-coil 2B
known_NIR_11211	chr2	32106155	32106624	+	32106245	32106624	A5SS	ENSMUST00000036691.14	known	0.03	1	34	1	34	n	0.00	0	13	0	13	n	0.04	2	51	2	51	y	0.02	1	42	1	42	n	0.02	1	54	1	54	n	0.07	1	14	1	14	n	0.09	3	30	3	30	y	0.00	0	44	0	44	n	0.07	1	14	1	14	n	0.08	4	49	4	49	y	0.11	2	17	2	17	y	0.02	1	42	1	42	n	ENSMUSG00000039262.17	Prrc2b	chr2	protein_coding	proline-rich coiled-coil 2B
known_NIR_11212	chr2	32108771	32109229	+	32108771	32109226	A3SS	ENSMUST00000036691.14	known	0.64	14	8	14	8	y	0.82	9	2	9	2	y	0.64	29	16	29	16	y	0.70	26	11	26	11	y	0.70	33	14	33	14	y	0.63	19	11	19	11	y	0.69	29	13	29	13	y	0.69	20	9	20	9	y	0.79	22	6	22	6	y	0.70	32	14	32	14	y	0.79	19	5	19	5	y	0.76	32	10	32	10	y	ENSMUSG00000039262.17	Prrc2b	chr2	protein_coding	proline-rich coiled-coil 2B
known_NIR_11213	chr2	32117048;32119356	32119275;32120623	+	32117048	32120623	cassetteExon	ENSMUST00000036691.14	known	0.49	18.5	19	16;21	19	y	0.65	15.0	8	14;16	8	y	0.22	15.0	54	13;17	54	y	0.43	18.5	25	20;17	25	y	0.42	34.0	46	33;35	46	y	0.42	17.5	24	15;20	24	y	0.52	23.0	21	26;20	21	y	0.52	22.5	21	25;20	21	y	0.48	15.5	17	16;15	17	y	0.29	15.0	36	18;12	36	y	0.45	22.5	28	21;24	28	y	0.41	22.5	33	20;25	33	y	ENSMUSG00000039262.17	Prrc2b	chr2	protein_coding	proline-rich coiled-coil 2B
known_NIR_11214	chr2	32127214	32127372	+	32126753	32127372	A5SS	ENSMUST00000036473.16	known	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	28	0	28	n	0.00	0	18	0	18	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.10	2	19	2	19	y	0.00	0	7	0	7	n	0.00	0	14	0	14	n	ENSMUSG00000039254.17	Pomt1	chr2	protein_coding	protein-O-mannosyltransferase 1
known_NIR_11215	chr2	32138723	32140451	+	32138723	32140482	A3SS	ENSMUST00000036473.16	known	0.00	0	25	0	25	n	0.00	0	12	0	12	n	0.00	0	34	0	34	n	0.06	2	31	2	31	y	0.00	0	52	0	52	n	0.00	0	19	0	19	n	0.00	0	37	0	37	n	0.00	0	22	0	22	n	0.00	0	27	0	27	n	0.00	0	38	0	38	n	0.00	0	32	0	32	n	0.00	0	29	0	29	n	ENSMUSG00000039254.17	Pomt1	chr2	protein_coding	protein-O-mannosyltransferase 1
known_NIR_11216	chr2	32169143;32170522	32170239;32170721	-	32169143	32170721	cassetteExon	ENSMUST00000113395.8	known	0.00	2.0	640	0;4	640	n	0.01	5.5	766	4;7	766	y	0.01	7.0	803	8;6	803	y	0.00	1.5	607	0;3	607	n	0.01	5.5	757	2;9	757	y	0.01	5.0	548	4;6	548	y	0.00	3.0	881	3;3	881	y	0.00	0.5	434	1;0	434	n	0.01	4.5	639	7;2	639	y	0.00	4.5	948	8;1	948	n	0.01	4.5	845	2;7	845	y	0.01	5.0	846	5;5	846	y	ENSMUSG00000044627.12	Swi5	chr2	protein_coding	SWI5 recombination repair homolog (yeast)
known_NIR_11217	chr2	32170815	32177609	-	32170815;32171822	32171698;32177609	ES	ENSMUST00000140406.8	known	0.01	3	585.5	3	557;614	y	0.01	8	658.0	8	672;644	y	0.00	2	696.0	2	690;702	y	0.01	3	534.5	3	526;543	y	0.01	7	745.0	7	670;820	y	0.00	0	502.0	0	484;520	n	0.01	11	766.5	11	768;765	y	0.00	2	473.0	2	454;492	y	0.01	4	504.0	4	499;509	y	0.01	12	821.0	12	799;843	y	0.01	9	694.0	9	704;684	y	0.01	7	686.5	7	673;700	y	ENSMUSG00000044627.12	Swi5	chr2	protein_coding	SWI5 recombination repair homolog (yeast)
known_NIR_11218	chr2	32177657	32178043	-	32177657	32177898	5pMXE	ENSMUST00000140406.8	known	0.02	13	547	13	547	y	0.02	11	618	11	618	y	0.01	9	691	9	691	y	0.01	7	518	7	518	y	0.03	19	731	19	731	y	0.02	12	477	12	477	y	0.03	21	709	21	709	y	0.01	5	493	5	493	y	0.03	13	443	13	443	y	0.03	21	795	21	795	y	0.03	23	637	23	637	y	0.03	19	603	19	603	y	ENSMUSG00000044627.12	Swi5	chr2	protein_coding	SWI5 recombination repair homolog (yeast)
known_NIR_11219	chr2	32182227	32183327	+	32182227	32186977	A3SS	ENSMUST00000127276.2	known	-	-	-	-	-	-	0.40	2	3	2	3	n	0.67	8	4	8	4	y	0.33	1	2	1	2	n	0.59	10	7	10	7	y	1.00	7	0	7	0	n	0.44	4	5	4	5	n	1.00	4	0	4	0	n	0.00	0	5	0	5	n	0.83	5	1	5	1	n	0.60	3	2	3	2	n	0.70	7	3	7	3	y	ENSMUSG00000002546.18	Golga2	chr2	protein_coding	golgi autoantigen, golgin subfamily a, 2
known_NIR_11220	chr2	32182227	32186638	+	32182227;32183407	32183327;32186638	ES	ENSMUST00000139494.8	known	1.00	25	0.0	25	0;0	n	0.97	31	1.0	31	2;0	n	0.87	41	6.0	41	8;4	y	0.96	45	2.0	45	1;3	n	0.86	38	6.0	38	10;2	y	0.82	25	5.5	25	7;4	y	0.83	26	5.5	26	4;7	y	0.90	31	3.5	31	4;3	y	0.98	30	0.5	30	0;1	n	0.87	37	5.5	37	5;6	y	0.94	24	1.5	24	3;0	n	0.84	34	6.5	34	7;6	y	ENSMUSG00000002546.18	Golga2	chr2	protein_coding	golgi autoantigen, golgin subfamily a, 2
known_NIR_11221	chr2	32182227	32186977	+	32182227;32186733	32186638;32186977	ES	ENSMUST00000239447.2	known	0.00	0	23.5	0	25;22	n	0.11	3	25.5	3	31;20	y	0.07	4	50.0	4	41;59	y	0.05	2	41.0	2	45;37	y	0.16	7	37.0	7	38;36	y	0.00	0	26.0	0	25;27	n	0.14	5	29.5	5	26;33	y	0.00	0	25.5	0	31;20	n	0.17	5	25.0	5	30;20	y	0.03	1	32.0	1	37;27	n	0.08	2	23.5	2	24;23	y	0.07	3	38.5	3	34;43	y	ENSMUSG00000002546.18	Golga2	chr2	protein_coding	golgi autoantigen, golgin subfamily a, 2
known_NIR_11222	chr2	32187589	32188612	+	32187589	32187766	3pMXE	ENSMUST00000139494.8	known	0.06	1	16	1	16	n	0.13	3	20	3	20	y	0.00	0	56	0	56	n	0.08	4	45	4	45	y	0.06	2	33	2	33	y	0.00	0	41	0	41	n	0.03	1	35	1	35	n	0.05	2	36	2	36	y	0.06	2	30	2	30	y	0.04	2	45	2	45	y	0.03	1	28	1	28	n	0.07	3	43	3	43	y	ENSMUSG00000002546.18	Golga2	chr2	protein_coding	golgi autoantigen, golgin subfamily a, 2
known_NIR_11223	chr2	32187589	32188612	+	32187589;32187846	32187766;32188612	ES	ENSMUST00000239447.2	known	0.06	1	15.0	1	16;14	n	0.12	3	23.0	3	20;26	y	0.00	0	66.5	0	56;77	n	0.09	4	41.0	4	45;37	y	0.05	2	40.0	2	33;47	y	0.00	0	39.0	0	41;37	n	0.03	1	33.5	1	35;32	n	0.06	2	32.5	2	36;29	y	0.05	2	37.0	2	30;44	y	0.04	2	42.5	2	45;40	y	0.03	1	33.0	1	28;38	n	0.06	3	49.5	3	43;56	y	ENSMUSG00000002546.18	Golga2	chr2	protein_coding	golgi autoantigen, golgin subfamily a, 2
known_NIR_11224	chr2	32253170	32253817	+	32253668	32253817	5pMXE	ENSMUST00000113332.8	known	0.23	6	20	6	20	y	0.08	2	24	2	24	y	0.17	3	15	3	15	y	0.14	4	24	4	24	y	0.28	12	31	12	31	y	0.44	8	10	8	10	y	0.16	4	21	4	21	y	0.13	2	13	2	13	y	0.32	7	15	7	15	y	0.11	4	32	4	32	y	0.26	6	17	6	17	y	0.17	4	19	4	19	y	ENSMUSG00000039205.17	Ciz1	chr2	protein_coding	CDKN1A interacting zinc finger protein 1
known_NIR_11225	chr2	32253310	32253817	+	32253668	32253817	A5SS&ES	ENSMUST00000136079.8	known	0.05	1	20	1	20	n	0.08	2	24	2	24	y	0.00	0	15	0	15	n	0.00	0	24	0	24	n	0.00	0	31	0	31	n	0.00	0	10	0	10	n	0.00	0	21	0	21	n	0.00	0	13	0	13	n	0.00	0	15	0	15	n	0.06	2	32	2	32	y	0.06	1	17	1	17	n	0.10	2	19	2	19	y	ENSMUSG00000039205.17	Ciz1	chr2	protein_coding	CDKN1A interacting zinc finger protein 1
known_NIR_11226	chr2	32253991	32255815	+	32253991	32254231	3pMXE	ENSMUST00000147338.2	known	0.00	0	24	0	24	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	17	0	17	n	0.00	0	37	0	37	n	0.12	1	7	1	7	n	0.00	0	25	0	25	n	0.00	0	12	0	12	n	0.00	0	23	0	23	n	0.09	3	29	3	29	y	0.00	0	15	0	15	n	0.07	2	27	2	27	y	ENSMUSG00000039205.17	Ciz1	chr2	protein_coding	CDKN1A interacting zinc finger protein 1
known_NIR_11227	chr2	32253991	32255815	+	32253991;32254346	32254231;32255815	ES	ENSMUST00000113334.8	known	0.00	0	20.5	0	24;17	n	0.00	0	16.0	0	12;20	n	0.00	0	15.5	0	12;19	n	0.00	0	19.0	0	17;21	n	0.00	0	30.0	0	37;23	n	0.13	1	6.5	1	7;6	n	0.00	0	30.0	0	25;35	n	0.00	0	13.0	0	12;14	n	0.00	0	19.5	0	23;16	n	0.11	3	24.0	3	29;19	y	0.00	0	16.5	0	15;18	n	0.07	2	27.0	2	27;27	y	ENSMUSG00000039205.17	Ciz1	chr2	protein_coding	CDKN1A interacting zinc finger protein 1
known_NIR_11228	chr2	32253991	32257315	+	32253991	32254231	3pMXE	ENSMUST00000147338.2	known	0.04	1	24	1	24	n	0.14	2	12	2	12	y	0.14	2	12	2	12	y	0.00	0	17	0	17	n	0.05	2	37	2	37	y	0.00	0	7	0	7	n	0.04	1	25	1	25	n	0.00	0	12	0	12	n	0.00	0	23	0	23	n	0.00	0	29	0	29	n	0.00	0	15	0	15	n	0.00	0	27	0	27	n	ENSMUSG00000039205.17	Ciz1	chr2	protein_coding	CDKN1A interacting zinc finger protein 1
known_NIR_11229	chr2	32253991	32257315	+	32255886	32257315	5pMXE	ENSMUST00000192055.2	known	0.05	1	18	1	18	n	0.06	2	29	2	29	y	0.08	2	24	2	24	y	0.00	0	24	0	24	n	0.06	2	32	2	32	y	0.00	0	7	0	7	n	0.03	1	37	1	37	n	0.00	0	13	0	13	n	0.00	0	15	0	15	n	0.00	0	21	0	21	n	0.00	0	20	0	20	n	0.00	0	28	0	28	n	ENSMUSG00000039205.17	Ciz1	chr2	protein_coding	CDKN1A interacting zinc finger protein 1
known_NIR_11230	chr2	32253991;32254346	32254231;32257315	+	32253991	32257315	cassetteExon	ENSMUST00000125769.8	known	0.93	14.0	1	24;4	1	n	0.76	6.5	2	12;1	2	n	0.80	8.0	2	12;4	2	y	1.00	10.5	0	17;4	0	n	0.91	21.0	2	37;5	2	y	1.00	3.5	0	7;0	0	n	0.93	12.5	1	25;0	1	n	1.00	7.0	0	12;2	0	n	1.00	12.0	0	23;1	0	n	1.00	16.5	0	29;4	0	n	1.00	10.0	0	15;5	0	n	1.00	17.0	0	27;7	0	n	ENSMUSG00000039205.17	Ciz1	chr2	protein_coding	CDKN1A interacting zinc finger protein 1
known_NIR_11231	chr2	32253991;32255886	32255815;32257315	+	32253991;32254346	32254231;32257315	MXE	ENSMUST00000113331.8	known	0.39	9.0	14.0	0;18	24;4	n	0.69	14.5	6.5	0;29	12;1	n	0.60	12.0	8.0	0;24	12;4	n	0.53	12.0	10.5	0;24	17;4	n	0.43	16.0	21.0	0;32	37;5	n	0.53	4.0	3.5	1;7	7;0	n	0.60	18.5	12.5	0;37	25;0	n	0.48	6.5	7.0	0;13	12;2	n	0.38	7.5	12.0	0;15	23;1	n	0.42	12.0	16.5	3;21	29;4	y	0.50	10.0	10.0	0;20	15;5	n	0.47	15.0	17.0	2;28	27;7	y	ENSMUSG00000039205.17	Ciz1	chr2	protein_coding	CDKN1A interacting zinc finger protein 1
known_NIR_11232	chr2	32254346	32257315	+	32254346;32255886	32255815;32257315	ES	ENSMUST00000113334.8	known	0.19	4	17.5	4	17;18	y	0.04	1	24.5	1	20;29	n	0.16	4	21.5	4	19;24	y	0.15	4	22.5	4	21;24	y	0.15	5	27.5	5	23;32	y	0.00	0	6.5	0	6;7	n	0.00	0	36.0	0	35;37	n	0.13	2	13.5	2	14;13	y	0.06	1	15.5	1	16;15	n	0.17	4	20.0	4	19;21	y	0.21	5	19.0	5	18;20	y	0.20	7	27.5	7	27;28	y	ENSMUSG00000039205.17	Ciz1	chr2	protein_coding	CDKN1A interacting zinc finger protein 1
known_NIR_11233	chr2	32254346	32257315	+	32255886	32257315	5pMXE	ENSMUST00000192055.2	known	0.18	4	18	4	18	y	0.03	1	29	1	29	n	0.14	4	24	4	24	y	0.14	4	24	4	24	y	0.14	5	32	5	32	y	0.00	0	7	0	7	n	0.00	0	37	0	37	n	0.13	2	13	2	13	y	0.06	1	15	1	15	n	0.16	4	21	4	21	y	0.20	5	20	5	20	y	0.20	7	28	7	28	y	ENSMUSG00000039205.17	Ciz1	chr2	protein_coding	CDKN1A interacting zinc finger protein 1
known_NIR_11234	chr2	32257544	32260059	+	32257544	32260044	A3SS	ENSMUST00000113334.8	known	0.00	0	28	0	28	n	0.25	4	12	4	12	y	0.23	6	20	6	20	y	0.30	7	16	7	16	y	0.15	6	33	6	33	y	0.47	7	8	7	8	y	0.21	6	22	6	22	y	0.05	1	20	1	20	n	0.08	2	22	2	22	y	0.21	6	23	6	23	y	0.11	2	16	2	16	y	0.18	3	14	3	14	y	ENSMUSG00000039205.17	Ciz1	chr2	protein_coding	CDKN1A interacting zinc finger protein 1
known_NIR_11235	chr2	32261125	32261261	+	32261113	32261261	A5SS	ENSMUST00000113332.8	known	0.12	2	15	2	15	y	0.00	0	18	0	18	n	0.14	3	18	3	18	y	0.29	5	12	5	12	y	0.31	8	18	8	18	y	0.12	1	7	1	7	n	0.20	4	16	4	16	y	0.17	2	10	2	10	y	0.25	4	12	4	12	y	0.39	11	17	11	17	y	0.13	2	13	2	13	y	0.43	10	13	10	13	y	ENSMUSG00000039205.17	Ciz1	chr2	protein_coding	CDKN1A interacting zinc finger protein 1
known_NIR_11236	chr2	32269545	32271704	-	32269545	32271694	A5SS	ENSMUST00000146423.2	known	0.99	208	3	208	3	y	0.99	209	2	209	2	y	0.98	197	3	197	3	y	0.97	194	5	194	5	y	0.99	325	4	325	4	y	0.99	113	1	113	1	n	0.99	250	3	250	3	y	0.99	139	1	139	1	n	0.99	188	2	188	2	y	0.98	311	6	311	6	y	0.99	277	4	277	4	y	0.99	172	2	172	2	y	ENSMUSG00000039195.5	1110008P14Rik	chr2	protein_coding	RIKEN cDNA 1110008P14 gene
known_NIR_11237	chr2	32286562	32287708	+	32286562	32287550	A3SS	ENSMUST00000028162.5	known	0.00	0	48	0	48	n	0.00	0	35	0	35	n	0.00	0	66	0	66	n	0.00	0	61	0	61	n	0.03	2	56	2	56	y	0.00	0	59	0	59	n	0.02	1	63	1	63	n	0.00	0	53	0	53	n	0.00	0	28	0	28	n	0.00	0	69	0	69	n	0.00	0	48	0	48	n	0.00	0	50	0	50	n	ENSMUSG00000026820.6	Ptges2	chr2	protein_coding	prostaglandin E synthase 2
known_NIR_11238	chr2	32290120	32290402	+	32290120	32290415	A3SS	ENSMUST00000028162.5	known	0.00	0	57	0	57	n	0.00	0	82	0	82	n	0.01	1	148	1	148	n	0.00	0	57	0	57	n	0.00	0	115	0	115	n	0.00	0	87	0	87	n	0.00	0	110	0	110	n	0.02	2	85	2	85	y	0.00	0	64	0	64	n	0.00	0	106	0	106	n	0.00	0	83	0	83	n	0.00	0	80	0	80	n	ENSMUSG00000026820.6	Ptges2	chr2	protein_coding	prostaglandin E synthase 2
known_NIR_11239	chr2	32310428	32311315	-	32310428;32310703	32310668;32311315	ES	ENSMUST00000052119.14	known	0.97	247	6.5	247	7;6	y	0.99	323	4.0	323	2;6	y	0.98	509	8.5	509	10;7	y	0.97	305	11.0	305	13;9	y	1.00	225	1.0	225	1;1	n	0.98	120	2.5	120	3;2	y	1.00	179	0.5	179	1;0	n	0.98	108	2.0	108	2;2	y	0.99	288	3.0	288	4;2	y	0.99	501	6.0	501	6;6	y	0.99	101	1.5	101	2;1	n	0.98	523	12.5	523	12;13	y	ENSMUSG00000026819.16	Slc25a25	chr2	protein_coding	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25
known_NIR_11240	chr2	32311611	32311797	-	32311611	32313806	A5SS	ENSMUST00000113307.9	known	0.01	3	255	3	255	y	0.01	2	317	2	317	y	0.01	4	554	4	554	y	0.01	2	315	2	315	y	0.01	1	191	1	191	n	0.00	0	105	0	105	n	0.01	1	171	1	171	n	0.00	0	101	0	101	n	0.00	0	320	0	320	n	0.01	4	487	4	487	y	0.03	3	90	3	90	y	0.00	3	636	3	636	y	ENSMUSG00000026819.16	Slc25a25	chr2	protein_coding	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25
known_NIR_11241	chr2	32311611	32311797	-	32311611	32341079	A5SS	ENSMUST00000028160.15	known	0.27	3	8	3	8	y	0.17	2	10	2	10	y	0.12	4	30	4	30	y	0.15	2	11	2	11	y	0.12	1	7	1	7	n	0.00	0	7	0	7	n	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.31	4	9	4	9	y	0.43	3	4	3	4	n	0.23	3	10	3	10	y	ENSMUSG00000026819.16	Slc25a25	chr2	protein_coding	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25
known_NIR_11242	chr2	32311611	32313806	-	32311611	32341079	A5SS	ENSMUST00000028160.15	known	0.97	255	8	255	8	y	0.97	317	10	317	10	y	0.95	554	30	554	30	y	0.97	315	11	315	11	y	0.96	191	7	191	7	y	0.94	105	7	105	7	y	0.97	171	6	171	6	y	0.94	101	6	101	6	y	0.99	320	3	320	3	y	0.98	487	9	487	9	y	0.96	90	4	90	4	y	0.98	636	10	636	10	y	ENSMUSG00000026819.16	Slc25a25	chr2	protein_coding	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25
known_NIR_11243	chr2	32497123	32498054	+	32497123	32502236	A3SS	ENSMUST00000126636.8	known	0.96	22	1	22	1	n	0.69	9	4	9	4	y	0.50	1	1	1	1	n	1.00	11	0	11	0	n	0.77	10	3	10	3	y	1.00	2	0	2	0	n	0.76	13	4	13	4	y	0.75	3	1	3	1	n	0.80	8	2	8	2	y	0.83	20	4	20	4	y	0.82	9	2	9	2	y	0.72	13	5	13	5	y	ENSMUSG00000026811.19	St6galnac6	chr2	protein_coding	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
known_NIR_11244	chr2	32497123	32499238	+	32498108	32499238	5pMXE	ENSMUST00000072111.8	known	0.29	4	10	4	10	y	0.30	3	7	3	7	y	0.00	0	2	0	2	n	0.18	3	14	3	14	y	0.38	6	10	6	10	y	-	-	-	-	-	-	0.25	3	9	3	9	y	0.00	0	4	0	4	n	0.40	4	6	4	6	y	0.21	4	15	4	15	y	0.18	2	9	2	9	y	0.25	2	6	2	6	n	ENSMUSG00000026811.19	St6galnac6	chr2	protein_coding	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
known_NIR_11245	chr2	32497123	32502236	+	32497123;32499328	32499238;32502236	ES	ENSMUST00000113290.8	known	0.02	1	53.5	1	4;103	n	0.09	4	41.5	4	3;80	y	0.04	1	24.0	1	0;48	n	0.00	0	72.5	0	3;142	n	0.04	3	76.0	3	6;146	y	0.00	0	25.0	0	0;50	n	0.06	4	64.0	4	3;125	y	0.02	1	39.5	1	0;79	n	0.04	2	50.0	2	4;96	y	0.05	4	76.0	4	4;148	y	0.05	2	40.5	2	2;79	y	0.07	5	62.5	5	2;123	y	ENSMUSG00000026811.19	St6galnac6	chr2	protein_coding	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
known_NIR_11246	chr2	32497123	32502236	+	32499328	32502236	A5SS&ES	ENSMUST00000140983.8	known	0.01	1	103	1	103	n	0.05	4	80	4	80	y	0.02	1	48	1	48	n	0.00	0	142	0	142	n	0.02	3	146	3	146	y	0.00	0	50	0	50	n	0.03	4	125	4	125	y	0.01	1	79	1	79	n	0.02	2	96	2	96	y	0.03	4	148	4	148	y	0.02	2	79	2	79	y	0.04	5	123	5	123	y	ENSMUSG00000026811.19	St6galnac6	chr2	protein_coding	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
known_NIR_11247	chr2	32497123;32498108	32498054;32499238	+	32497123	32499238	cassetteExon	ENSMUST00000113290.8	known	0.80	16.0	4	22;10	4	y	0.73	8.0	3	9;7	3	y	1.00	1.5	0	1;2	0	n	0.81	12.5	3	11;14	3	y	0.62	10.0	6	10;10	6	y	1.00	1.0	0	2;0	0	n	0.79	11.0	3	13;9	3	y	1.00	3.5	0	3;4	0	n	0.64	7.0	4	8;6	4	y	0.81	17.5	4	20;15	4	y	0.82	9.0	2	9;9	2	y	0.83	9.5	2	13;6	2	y	ENSMUSG00000026811.19	St6galnac6	chr2	protein_coding	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
known_NIR_11248	chr2	32497123;32498237	32498054;32499238	+	32497123	32499238	cassetteExon	ENSMUST00000113290.8	known	0.73	11.0	4	22;0	4	n	0.65	5.5	3	9;2	3	y	1.00	0.5	0	1;0	0	n	0.67	6.0	3	11;1	3	n	0.45	5.0	6	10;0	6	n	1.00	2.0	0	2;2	0	n	0.68	6.5	3	13;0	3	n	1.00	3.0	0	3;3	0	n	0.56	5.0	4	8;2	4	y	0.76	12.5	4	20;5	4	y	0.69	4.5	2	9;0	2	n	0.80	8.0	2	13;3	2	y	ENSMUSG00000026811.19	St6galnac6	chr2	protein_coding	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
known_NIR_11249	chr2	32498108	32499238	+	32498237	32499238	A5SS	ENSMUST00000095045.9	known	1.00	10	0	10	0	n	0.78	7	2	7	2	n	1.00	2	0	2	0	n	0.93	14	1	14	1	n	1.00	10	0	10	0	n	0.00	0	2	0	2	n	1.00	9	0	9	0	n	0.57	4	3	4	3	n	0.75	6	2	6	2	n	0.75	15	5	15	5	y	1.00	9	0	9	0	n	0.67	6	3	6	3	n	ENSMUSG00000026811.19	St6galnac6	chr2	protein_coding	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
known_NIR_11250	chr2	32498888	32499238	+	32498108	32499238	A5SS	ENSMUST00000095044.10	known	0.09	1	10	1	10	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.12	2	14	2	14	y	0.00	0	10	0	10	n	1.00	1	0	1	0	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	ENSMUSG00000026811.19	St6galnac6	chr2	protein_coding	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
known_NIR_11251	chr2	32499328	32504793	+	32499328	32502236	3pMXE	ENSMUST00000129165.2	known	0.02	2	103	2	103	y	0.00	0	80	0	80	n	0.00	0	48	0	48	n	0.00	0	142	0	142	n	0.01	1	146	1	146	n	0.00	0	50	0	50	n	0.00	0	125	0	125	n	0.00	0	79	0	79	n	0.00	0	96	0	96	n	0.01	1	148	1	148	n	0.00	0	79	0	79	n	0.00	0	123	0	123	n	ENSMUSG00000026811.19	St6galnac6	chr2	protein_coding	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
known_NIR_11252	chr2	32499328	32504793	+	32499328;32502415	32502236;32504793	ES	ENSMUST00000140983.8	known	0.02	2	121.5	2	103;140	y	0.00	0	85.5	0	80;91	n	0.00	0	65.0	0	48;82	n	0.00	0	137.0	0	142;132	n	0.01	1	158.0	1	146;170	n	0.00	0	65.0	0	50;80	n	0.00	0	139.5	0	125;154	n	0.00	0	71.0	0	79;63	n	0.00	0	91.0	0	96;86	n	0.01	1	157.0	1	148;166	n	0.00	0	86.0	0	79;93	n	0.00	0	122.0	0	123;121	n	ENSMUSG00000026811.19	St6galnac6	chr2	protein_coding	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
known_NIR_11253	chr2	32505180	32508509	+	32505199	32508509	A5SS	ENSMUST00000131229.8	known	0.03	3	89	3	89	y	0.02	2	94	2	94	y	0.12	6	42	6	42	y	0.11	15	116	15	116	y	0.08	13	154	13	154	y	0.08	6	65	6	65	y	0.09	11	115	11	115	y	0.07	5	63	5	63	y	0.10	10	95	10	95	y	0.10	14	131	14	131	y	0.08	9	107	9	107	y	0.10	15	137	15	137	y	ENSMUSG00000026811.19	St6galnac6	chr2	protein_coding	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
known_NIR_11254	chr2	32537036	32540154	+	32537036	32547528	A3SS	ENSMUST00000113272.8	known	0.00	0	31	0	31	n	0.00	0	19	0	19	n	0.00	0	43	0	43	n	0.00	0	18	0	18	n	0.06	3	47	3	47	y	0.09	3	31	3	31	y	0.00	0	29	0	29	n	0.00	0	13	0	13	n	0.13	2	13	2	13	y	0.03	1	31	1	31	n	0.00	0	25	0	25	n	0.03	1	30	1	30	n	ENSMUSG00000026814.17	Eng	chr2	protein_coding	endoglin
known_NIR_11255	chr2	32537036	32540154	+	32537036	32547531	A3SS	ENSMUST00000167841.8	known	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.25	3	9	3	9	y	0.27	3	8	3	8	y	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.50	2	2	2	2	n	0.12	1	7	1	7	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	ENSMUSG00000026814.17	Eng	chr2	protein_coding	endoglin
known_NIR_11256	chr2	32537036	32547531	+	32537036	32547528	A3SS	ENSMUST00000113272.8	known	0.14	5	31	5	31	y	0.10	2	19	2	19	y	0.16	8	43	8	43	y	0.10	2	18	2	18	y	0.16	9	47	9	47	y	0.21	8	31	8	31	y	0.33	14	29	14	29	y	0.28	5	13	5	13	y	0.13	2	13	2	13	y	0.18	7	31	7	31	y	0.14	4	25	4	25	y	0.17	6	30	6	30	y	ENSMUSG00000026814.17	Eng	chr2	protein_coding	endoglin
known_NIR_11257	chr2	32567973	32568396	+	32567973	32568468	A3SS	ENSMUST00000113272.8	known	0.00	0	73	0	73	n	0.02	1	57	1	57	n	0.02	2	119	2	119	y	0.00	0	72	0	72	n	0.02	3	175	3	175	y	0.00	0	63	0	63	n	0.00	0	125	0	125	n	0.02	1	62	1	62	n	0.00	0	41	0	41	n	0.00	0	73	0	73	n	0.01	1	95	1	95	n	0.01	1	89	1	89	n	ENSMUSG00000026814.17	Eng	chr2	protein_coding	endoglin
known_NIR_11258	chr2	32582733	32593837	-	32582733	32584001	5pMXE	ENSMUST00000028148.11	known	0.94	217	13	217	13	y	0.95	203	11	203	11	y	0.91	372	39	372	39	y	0.97	300	9	300	9	y	0.96	472	21	472	21	y	0.97	295	10	295	10	y	0.94	392	23	392	23	y	0.98	254	6	254	6	y	0.93	203	16	203	16	y	0.96	316	13	316	13	y	0.94	236	14	236	14	y	0.97	214	6	214	6	y	ENSMUSG00000009566.13	Fpgs	chr2	protein_coding	folylpolyglutamyl synthetase
known_NIR_11259	chr2	32600803	32602043	-	32600579	32602043	A3SS	ENSMUST00000009699.16	known	0.06	4	66	4	66	y	0.07	5	70	5	70	y	0.19	31	133	31	133	y	0.11	10	79	10	79	y	0.10	13	119	13	119	y	0.17	16	76	16	76	y	0.07	11	146	11	146	y	0.22	14	50	14	50	y	0.08	8	91	8	91	y	0.10	10	90	10	90	y	0.05	4	80	4	80	y	0.09	11	107	11	107	y	ENSMUSG00000009555.17	Cdk9	chr2	protein_coding	cyclin-dependent kinase 9 (CDC2-related kinase)
known_NIR_11260	chr2	32627570	32634763	+	32627570	32631222	3pMXE	ENSMUST00000141670.2	known	1.00	2	0	2	0	n	1.00	3	0	3	0	n	0.60	3	2	3	2	n	0.75	3	1	3	1	n	0.40	2	3	2	3	n	0.89	8	1	8	1	n	0.67	12	6	12	6	y	0.00	0	3	0	3	n	0.40	2	3	2	3	n	1.00	2	0	2	0	n	1.00	5	0	5	0	n	0.80	4	1	4	1	n	ENSMUSG00000059013.13	Sh2d3c	chr2	protein_coding	SH2 domain containing 3C
known_NIR_11261	chr2	32627570	32634763	+	32631679	32634763	5pMXE	ENSMUST00000131101.3	known	0.50	2	2	2	2	n	1.00	3	0	3	0	n	0.75	3	1	3	1	n	1.00	3	0	3	0	n	0.33	2	4	2	4	n	0.73	8	3	8	3	y	0.92	12	1	12	1	n	0.00	0	2	0	2	n	1.00	2	0	2	0	n	0.67	2	1	2	1	n	0.56	5	4	5	4	n	0.50	4	4	4	4	n	ENSMUSG00000059013.13	Sh2d3c	chr2	protein_coding	SH2 domain containing 3C
known_NIR_11262	chr2	32647462	32647900	+	32647462	32648683	A3SS	ENSMUST00000009707.14	known	0.00	0	87	0	87	n	0.04	4	90	4	90	y	0.05	8	157	8	157	y	0.03	3	98	3	98	y	0.01	1	156	1	156	n	0.00	0	81	0	81	n	0.00	0	112	0	112	n	0.02	2	87	2	87	y	0.02	2	93	2	93	y	0.00	0	137	0	137	n	0.02	2	104	2	104	y	0.00	0	126	0	126	n	ENSMUSG00000009563.17	Tor2a	chr2	protein_coding	torsin family 2, member A
known_NIR_11263	chr2	32647462	32647900	+	32647462	32648769	A3SS	ENSMUST00000156617.8	known	0.00	0	11	0	11	n	0.24	4	13	4	13	y	0.26	8	23	8	23	y	0.16	3	16	3	16	y	0.05	1	19	1	19	n	0.00	0	10	0	10	n	0.00	0	24	0	24	n	0.13	2	13	2	13	y	0.22	2	7	2	7	n	0.00	0	21	0	21	n	0.10	2	19	2	19	y	0.00	0	14	0	14	n	ENSMUSG00000009563.17	Tor2a	chr2	protein_coding	torsin family 2, member A
known_NIR_11264	chr2	32647462	32648769	+	32647462	32648683	A3SS	ENSMUST00000009707.14	known	0.11	11	87	11	87	y	0.13	13	90	13	90	y	0.13	23	157	23	157	y	0.14	16	98	16	98	y	0.11	19	156	19	156	y	0.11	10	81	10	81	y	0.18	24	112	24	112	y	0.13	13	87	13	87	y	0.07	7	93	7	93	y	0.13	21	137	21	137	y	0.15	19	104	19	104	y	0.10	14	126	14	126	y	ENSMUSG00000009563.17	Tor2a	chr2	protein_coding	torsin family 2, member A
known_NIR_11265	chr2	32647551	32648769	+	32647462	32648769	A5SS	ENSMUST00000156617.8	known	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.12	3	23	3	23	y	0.00	0	16	0	16	n	0.24	6	19	6	19	y	0.00	0	10	0	10	n	0.11	3	24	3	24	y	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.16	4	21	4	21	y	0.00	0	19	0	19	n	0.00	0	14	0	14	n	ENSMUSG00000009563.17	Tor2a	chr2	protein_coding	torsin family 2, member A
known_NIR_11266	chr2	32666535	32666724	+	32666535	32666719	A3SS	ENSMUST00000066352.6	known	0.00	0	8	0	8	n	0.17	1	5	1	5	n	0.10	2	19	2	19	y	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	ENSMUSG00000053746.9	Ptrh1	chr2	protein_coding	peptidyl-tRNA hydrolase 1 homolog
known_NIR_11267	chr2	32808699	32809005	+	32802599	32809005	A5SS	ENSMUST00000028135.15	known	1.00	3	0	3	0	n	0.33	3	6	3	6	n	0.57	21	16	21	16	y	0.92	12	1	12	1	n	0.68	17	8	17	8	y	0.88	21	3	21	3	y	0.58	7	5	7	5	y	0.85	23	4	23	4	y	1.00	7	0	7	0	n	1.00	6	0	6	0	n	0.00	0	1	0	1	n	0.40	2	3	2	3	n	ENSMUSG00000026796.17	Niban2	chr2	protein_coding	niban apoptosis regulator 2
known_NIR_11268	chr2	32828896	32830248	-	32828896	32830253	A5SS	ENSMUST00000028132.14	known	0.27	3	8	3	8	y	0.11	1	8	1	8	n	0.42	5	7	5	7	y	0.00	0	16	0	16	n	0.00	0	17	0	17	n	0.00	0	6	0	6	n	0.10	1	9	1	9	n	0.12	2	14	2	14	y	0.50	3	3	3	3	n	0.11	1	8	1	8	n	0.00	0	13	0	13	n	0.00	0	15	0	15	n	ENSMUSG00000026792.17	Lrsam1	chr2	protein_coding	leucine rich repeat and sterile alpha motif containing 1
known_NIR_11269	chr2	32851972	32852061	+	32851851	32852061	A5SS	ENSMUST00000126610.2	known	0.01	10	1746	10	1746	y	0.01	15	1643	15	1643	y	0.01	16	2802	16	2802	y	0.01	14	1385	14	1385	y	0.01	13	2374	13	2374	y	0.00	4	1444	4	1444	y	0.01	18	2416	18	2416	y	0.01	10	1428	10	1428	y	0.01	13	1473	13	1473	y	0.01	16	1965	16	1965	y	0.02	33	1904	33	1904	y	0.01	16	1942	16	1942	y	ENSMUSG00000038900.18	Rpl12	chr2	protein_coding	ribosomal protein L12
known_NIR_11270	chr2	32864995;32865496	32865326;32866149	-	32864995	32866149	cassetteExon	ENSMUST00000153484.7	known	1.00	26.0	0	52;0	0	n	1.00	34.5	0	69;0	0	n	0.92	23.5	2	45;2	2	y	1.00	23.0	0	46;0	0	n	1.00	42.5	0	83;2	0	n	1.00	18.0	0	34;2	0	n	1.00	27.0	0	54;0	0	n	1.00	21.0	0	42;0	0	n	1.00	25.0	0	50;0	0	n	1.00	34.0	0	68;0	0	n	1.00	27.5	0	54;1	0	n	1.00	26.5	0	53;0	0	n	ENSMUSG00000026791.15	Slc2a8	chr2	protein_coding	solute carrier family 2, (facilitated glucose transporter), member 8
known_NIR_11271	chr2	32865496	32866149	-	32865496;32866040	32865932;32866149	ES	ENSMUST00000028129.13	known	0.00	0	45.5	0	35;56	n	0.00	0	43.0	0	36;50	n	0.05	2	35.0	2	22;48	y	0.00	0	38.5	0	35;42	n	0.03	2	72.0	2	61;83	y	0.05	2	36.0	2	29;43	y	0.00	0	51.0	0	45;57	n	0.00	0	33.5	0	29;38	n	0.00	0	42.0	0	30;54	n	0.00	0	59.5	0	54;65	n	0.02	1	40.0	1	38;42	n	0.00	0	40.0	0	31;49	n	ENSMUSG00000026791.15	Slc2a8	chr2	protein_coding	solute carrier family 2, (facilitated glucose transporter), member 8
known_NIR_11272	chr2	32865496	32866149	-	32866040	32866149	3pMXE	ENSMUST00000195863.2	known	0.00	0	56	0	56	n	0.00	0	50	0	50	n	0.04	2	48	2	48	y	0.00	0	42	0	42	n	0.02	2	83	2	83	y	0.04	2	43	2	43	y	0.00	0	57	0	57	n	0.00	0	38	0	38	n	0.00	0	54	0	54	n	0.00	0	65	0	65	n	0.02	1	42	1	42	n	0.00	0	49	0	49	n	ENSMUSG00000026791.15	Slc2a8	chr2	protein_coding	solute carrier family 2, (facilitated glucose transporter), member 8
known_NIR_11273	chr2	32866040	32866149	-	32864995	32866149	A3SS	ENSMUST00000153484.7	known	1.00	56	0	56	0	n	1.00	50	0	50	0	n	0.96	48	2	48	2	y	1.00	42	0	42	0	n	1.00	83	0	83	0	n	1.00	43	0	43	0	n	1.00	57	0	57	0	n	1.00	38	0	38	0	n	1.00	54	0	54	0	n	1.00	65	0	65	0	n	1.00	42	0	42	0	n	1.00	49	0	49	0	n	ENSMUSG00000026791.15	Slc2a8	chr2	protein_coding	solute carrier family 2, (facilitated glucose transporter), member 8
known_NIR_11274	chr2	3305984;3306476	3306434;3310504	+	3305984	3310504	cassetteExon	ENSMUST00000102989.10	known	1.00	5.0	0	9;1	0	n	1.00	3.0	0	6;0	0	n	0.86	18.5	3	33;4	3	y	0.83	10.0	2	15;5	2	y	1.00	11.5	0	23;0	0	n	0.85	5.5	1	11;0	1	n	0.90	17.5	2	26;9	2	y	0.81	8.5	2	13;4	2	y	0.88	7.5	1	15;0	1	n	1.00	8.5	0	13;4	0	n	0.85	5.5	1	8;3	1	n	0.86	12.0	2	21;3	2	y	ENSMUSG00000026643.17	Nmt2	chr2	protein_coding	N-myristoyltransferase 2
known_NIR_11275	chr2	3306476	3310504	+	3306476;3308069	3308020;3310504	ES	ENSMUST00000081932.13	known	0.15	1	5.5	1	6;5	n	0.00	0	5.5	0	6;5	n	0.23	4	13.5	4	15;12	y	0.27	5	13.5	5	9;18	y	0.00	0	16.5	0	14;19	n	0.00	0	9.5	0	9;10	n	0.41	9	13.0	9	11;15	y	0.33	4	8.0	4	8;8	y	0.00	0	11.0	0	16;6	n	0.24	4	13.0	4	11;15	y	0.55	3	2.5	3	3;2	n	0.15	3	16.5	3	10;23	y	ENSMUSG00000026643.17	Nmt2	chr2	protein_coding	N-myristoyltransferase 2
known_NIR_11276	chr2	3308069	3310504	+	3305984	3310504	A5SS	ENSMUST00000102989.10	known	1.00	5	0	5	0	n	1.00	5	0	5	0	n	0.80	12	3	12	3	y	0.90	18	2	18	2	y	1.00	19	0	19	0	n	0.91	10	1	10	1	n	0.88	15	2	15	2	y	0.80	8	2	8	2	y	0.86	6	1	6	1	n	1.00	15	0	15	0	n	0.67	2	1	2	1	n	0.92	23	2	23	2	y	ENSMUSG00000026643.17	Nmt2	chr2	protein_coding	N-myristoyltransferase 2
known_NIR_11277	chr2	33345135	33354926	-	33345135	33352278	5pMXE	ENSMUST00000095035.3	known	0.84	16	3	16	3	y	1.00	11	0	11	0	n	0.57	12	9	12	9	y	0.81	13	3	13	3	y	0.73	16	6	16	6	y	0.77	10	3	10	3	y	0.83	10	2	10	2	y	0.85	11	2	11	2	y	0.93	14	1	14	1	n	0.88	15	2	15	2	y	0.92	12	1	12	1	n	0.86	19	3	19	3	y	ENSMUSG00000026788.14	Zbtb43	chr2	protein_coding	zinc finger and BTB domain containing 43
known_NIR_11278	chr2	33345135;33352369	33352278;33354926	-	33345135	33354926	cassetteExon	ENSMUST00000028125.12	known	0.14	2.5	16	3;2	16	y	0.00	0.0	11	0;0	11	n	0.40	8.0	12	9;7	12	y	0.13	2.0	13	3;1	13	n	0.24	5.0	16	6;4	16	y	0.31	4.5	10	3;6	10	y	0.20	2.5	10	2;3	10	y	0.12	1.5	11	2;1	11	n	0.03	0.5	14	1;0	14	n	0.23	4.5	15	2;7	15	y	0.08	1.0	12	1;1	12	n	0.16	3.5	19	3;4	19	y	ENSMUSG00000026788.14	Zbtb43	chr2	protein_coding	zinc finger and BTB domain containing 43
known_NIR_11279	chr2	33355049	33358445	-	33354986	33358445	A3SS	ENSMUST00000028125.12	known	0.58	7	5	7	5	y	0.14	1	6	1	6	n	0.20	3	12	3	12	y	0.42	8	11	8	11	y	0.52	11	10	11	10	y	0.33	4	8	4	8	y	0.25	2	6	2	6	n	0.38	5	8	5	8	y	0.27	4	11	4	11	y	0.93	14	1	14	1	n	0.30	3	7	3	7	y	0.23	3	10	3	10	y	ENSMUSG00000026788.14	Zbtb43	chr2	protein_coding	zinc finger and BTB domain containing 43
known_NIR_11280	chr2	34065966	34068189	-	34066873	34068189	3pMXE	ENSMUST00000175855.3	known	0.33	2	4	2	4	n	1.00	1	0	1	0	n	0.29	6	15	6	15	y	0.17	1	5	1	5	n	0.12	1	7	1	7	n	0.15	2	11	2	11	y	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.25	1	3	1	3	n	0.17	1	5	1	5	n	ENSMUSG00000038718.16	Pbx3	chr2	protein_coding	pre B cell leukemia homeobox 3
known_NIR_11281	chr2	34065966;34066873	34066761;34068189	-	34065966	34068189	cassetteExon	ENSMUST00000113132.9	known	0.56	2.5	2	1;4	2	n	0.00	0.0	1	0;0	1	n	0.62	10.0	6	5;15	6	y	0.82	4.5	1	4;5	1	n	0.82	4.5	1	2;7	1	n	0.76	6.5	2	2;11	2	y	1.00	3.5	0	3;4	0	n	0.82	4.5	1	3;6	1	n	1.00	1.5	0	0;3	0	n	0.71	2.5	1	4;1	1	n	0.71	2.5	1	2;3	1	n	0.78	3.5	1	2;5	1	n	ENSMUSG00000038718.16	Pbx3	chr2	protein_coding	pre B cell leukemia homeobox 3
known_NIR_11282	chr2	34297266	34319530	+	34297266	34334270	A3SS	ENSMUST00000156967.8	known	0.27	3	8	3	8	y	0.25	1	3	1	3	n	0.60	3	2	3	2	n	0.50	1	1	1	1	n	0.12	1	7	1	7	n	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.80	4	1	4	1	n	1.00	1	0	1	0	n	0.20	1	4	1	4	n	0.29	2	5	2	5	n	0.00	0	3	0	3	n	ENSMUSG00000038696.15	Mapkap1	chr2	protein_coding	mitogen-activated protein kinase associated protein 1
known_NIR_11283	chr2	34297266	34322015	+	34296860	34322015	A5SS	ENSMUST00000149383.8	known	0.96	47	2	47	2	y	0.91	20	2	20	2	y	1.00	56	0	56	0	n	0.98	63	1	63	1	n	1.00	66	0	66	0	n	1.00	30	0	30	0	n	1.00	61	0	61	0	n	0.90	27	3	27	3	y	1.00	29	0	29	0	n	0.95	62	3	62	3	y	1.00	34	0	34	0	n	0.96	50	2	50	2	y	ENSMUSG00000038696.15	Mapkap1	chr2	protein_coding	mitogen-activated protein kinase associated protein 1
known_NIR_11284	chr2	34297266	34322015	+	34297101	34322015	A5SS	ENSMUST00000113124.8	known	0.98	47	1	47	1	n	1.00	20	0	20	0	n	1.00	56	0	56	0	n	0.95	63	3	63	3	y	0.97	66	2	66	2	y	1.00	30	0	30	0	n	1.00	61	0	61	0	n	1.00	27	0	27	0	n	0.97	29	1	29	1	n	1.00	62	0	62	0	n	1.00	34	0	34	0	n	0.96	50	2	50	2	y	ENSMUSG00000038696.15	Mapkap1	chr2	protein_coding	mitogen-activated protein kinase associated protein 1
known_NIR_11285	chr2	34297266	34322015	+	34297266	34334270	A3SS	ENSMUST00000156967.8	known	0.85	47	8	47	8	y	0.87	20	3	20	3	y	0.97	56	2	56	2	y	0.98	63	1	63	1	n	0.90	66	7	66	7	y	0.88	30	4	30	4	y	0.97	61	2	61	2	y	0.96	27	1	27	1	n	1.00	29	0	29	0	n	0.94	62	4	62	4	y	0.87	34	5	34	5	y	0.94	50	3	50	3	y	ENSMUSG00000038696.15	Mapkap1	chr2	protein_coding	mitogen-activated protein kinase associated protein 1
known_NIR_11286	chr2	34297266	34322015	+	34297266;34319638	34319530;34322015	ES	ENSMUST00000141253.2	known	0.97	47	1.5	47	3;0	n	0.91	20	2.0	20	1;3	n	0.95	56	3.0	56	3;3	y	0.98	63	1.0	63	1;1	n	0.96	66	3.0	66	1;5	n	1.00	30	0.0	30	0;0	n	0.99	61	0.5	61	1;0	n	0.92	27	2.5	27	4;1	n	0.95	29	1.5	29	1;2	n	0.95	62	3.5	62	1;6	n	0.97	34	1.0	34	2;0	n	1.00	50	0.0	50	0;0	n	ENSMUSG00000038696.15	Mapkap1	chr2	protein_coding	mitogen-activated protein kinase associated protein 1
known_NIR_11287	chr2	34297266	34325145	+	34322342	34325145	A5SS&ES	ENSMUST00000149383.8	known	0.08	5	55	5	55	y	0.08	4	46	4	46	y	0.00	0	75	0	75	n	0.03	2	73	2	73	y	0.05	5	103	5	103	y	0.05	2	42	2	42	y	0.00	0	76	0	76	n	0.08	4	49	4	49	y	0.03	2	66	2	66	y	0.01	1	89	1	89	n	0.04	2	53	2	53	y	0.01	1	93	1	93	n	ENSMUSG00000038696.15	Mapkap1	chr2	protein_coding	mitogen-activated protein kinase associated protein 1
known_NIR_11288	chr2	34297266	34334270	+	34297266;34325234	34325145;34334270	ES	ENSMUST00000124443.8	known	0.20	8	31.5	8	5;58	y	0.14	3	18.0	3	4;32	y	0.04	2	45.0	2	0;90	n	0.03	1	36.0	1	2;70	n	0.12	7	50.0	7	5;95	y	0.16	4	20.5	4	2;39	y	0.05	2	39.5	2	0;79	n	0.04	1	22.0	1	4;40	n	0.00	0	23.5	0	2;45	n	0.09	4	41.0	4	1;81	n	0.20	5	20.0	5	2;38	y	0.07	3	43.0	3	1;85	n	ENSMUSG00000038696.15	Mapkap1	chr2	protein_coding	mitogen-activated protein kinase associated protein 1
known_NIR_11289	chr2	34297266	34334270	+	34325234	34334270	A5SS&ES	ENSMUST00000149383.8	known	0.12	8	58	8	58	y	0.09	3	32	3	32	y	0.02	2	90	2	90	y	0.01	1	70	1	70	n	0.07	7	95	7	95	y	0.09	4	39	4	39	y	0.02	2	79	2	79	y	0.02	1	40	1	40	n	0.00	0	45	0	45	n	0.05	4	81	4	81	y	0.12	5	38	5	38	y	0.03	3	85	3	85	y	ENSMUSG00000038696.15	Mapkap1	chr2	protein_coding	mitogen-activated protein kinase associated protein 1
known_NIR_11290	chr2	34297266;34322342	34322015;34325145	+	34297266	34325145	cassetteExon	ENSMUST00000124443.8	known	0.91	51.0	5	47;55	5	y	0.89	33.0	4	20;46	4	y	1.00	65.5	0	56;75	0	n	0.97	68.0	2	63;73	2	y	0.94	84.5	5	66;103	5	y	0.95	36.0	2	30;42	2	y	1.00	68.5	0	61;76	0	n	0.90	38.0	4	27;49	4	y	0.96	47.5	2	29;66	2	y	0.99	75.5	1	62;89	1	n	0.96	43.5	2	34;53	2	y	0.99	71.5	1	50;93	1	n	ENSMUSG00000038696.15	Mapkap1	chr2	protein_coding	mitogen-activated protein kinase associated protein 1
known_NIR_11291	chr2	34334418	34368707	+	34334418	34387713	A3SS	ENSMUST00000149383.8	known	0.01	1	73	1	73	n	0.00	0	47	0	47	n	0.00	0	109	0	109	n	0.00	0	76	0	76	n	0.02	2	99	2	99	y	0.00	0	75	0	75	n	0.00	0	78	0	78	n	0.02	1	64	1	64	n	0.00	0	52	0	52	n	0.01	1	101	1	101	n	0.02	1	46	1	46	n	0.01	1	108	1	108	n	ENSMUSG00000038696.15	Mapkap1	chr2	protein_coding	mitogen-activated protein kinase associated protein 1
known_NIR_11292	chr2	3437530	3438067	+	3437530	3438026	A3SS	ENSMUST00000100463.10	known	0.50	2	2	2	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.40	2	3	2	3	n	0.18	2	9	2	9	y	0.25	1	3	1	3	n	0.11	1	8	1	8	n	ENSMUSG00000026648.19	Dclre1c	chr2	protein_coding	DNA cross-link repair 1C
known_NIR_11293	chr2	3438123	3438713	+	3438127	3438713	A5SS	ENSMUST00000100463.10	known	0.50	3	3	3	3	n	0.00	0	5	0	5	n	0.11	1	8	1	8	n	0.00	0	11	0	11	n	0.25	2	6	2	6	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.40	2	3	2	3	n	0.33	2	4	2	4	n	0.33	7	14	7	14	y	0.14	1	6	1	6	n	0.07	1	13	1	13	n	ENSMUSG00000026648.19	Dclre1c	chr2	protein_coding	DNA cross-link repair 1C
known_NIR_11294	chr2	34423909	34471204	+	34423909;34453174	34453067;34471204	ES	ENSMUST00000124443.8	known	0.04	4	103.5	4	97;110	y	0.05	4	75.5	4	72;79	y	0.09	14	135.5	14	135;136	y	0.08	8	97.5	8	100;95	y	0.04	6	137.5	6	129;146	y	0.03	2	58.5	2	49;68	y	0.07	10	136.5	10	108;165	y	0.06	5	79.0	5	85;73	y	0.04	3	74.5	3	79;70	y	0.06	8	125.0	8	103;147	y	0.03	3	98.5	3	90;107	y	0.04	5	125.5	5	112;139	y	ENSMUSG00000038696.15	Mapkap1	chr2	protein_coding	mitogen-activated protein kinase associated protein 1
known_NIR_11295	chr2	3451410	3458581	+	3451410	3453885	3pMXE	ENSMUST00000102988.10	known	0.21	3	11	3	11	y	0.29	2	5	2	5	n	0.56	5	4	5	4	n	0.08	1	12	1	12	n	0.42	10	14	10	14	y	0.00	0	4	0	4	n	0.00	0	15	0	15	n	0.00	0	4	0	4	n	0.44	4	5	4	5	n	0.14	3	19	3	19	y	0.19	3	13	3	13	y	0.37	10	17	10	17	y	ENSMUSG00000026648.19	Dclre1c	chr2	protein_coding	DNA cross-link repair 1C
known_NIR_11296	chr2	3451410;3454235	3453885;3458581	+	3451410	3458581	cassetteExon	ENSMUST00000100463.10	known	0.80	12.0	3	11;13	3	y	0.69	4.5	2	5;4	2	y	0.52	5.5	5	4;7	5	y	0.88	7.5	1	12;3	1	n	0.49	9.5	10	14;5	10	y	1.00	2.0	0	4;0	0	n	1.00	8.5	0	15;2	0	n	1.00	4.0	0	4;4	0	n	0.58	5.5	4	5;6	4	y	0.81	13.0	3	19;7	3	y	0.77	10.0	3	13;7	3	y	0.52	11.0	10	17;5	10	y	ENSMUSG00000026648.19	Dclre1c	chr2	protein_coding	DNA cross-link repair 1C
known_NIR_11297	chr2	34585620	34590775	-	34585620;34589918	34589838;34590775	ES	ENSMUST00000102800.9	known	0.12	3	23.0	3	22;24	y	0.15	3	17.5	3	16;19	y	0.02	1	52.0	1	50;54	n	0.08	3	36.0	3	36;36	y	0.16	9	47.0	9	51;43	y	0.03	1	34.5	1	38;31	n	0.15	6	34.0	6	36;32	y	0.29	9	22.5	9	24;21	y	0.10	3	27.0	3	24;30	y	0.21	11	42.5	11	47;38	y	0.23	8	27.0	8	29;25	y	0.08	3	35.0	3	41;29	y	ENSMUSG00000026867.20	Gapvd1	chr2	protein_coding	GTPase activating protein and VPS9 domains 1
known_NIR_11298	chr2	34585620	34590775	-	34589918	34590775	3pMXE	ENSMUST00000137528.8	known	0.11	3	24	3	24	y	0.14	3	19	3	19	y	0.02	1	54	1	54	n	0.08	3	36	3	36	y	0.17	9	43	9	43	y	0.03	1	31	1	31	n	0.16	6	32	6	32	y	0.30	9	21	9	21	y	0.09	3	30	3	30	y	0.22	11	38	11	38	y	0.24	8	25	8	25	y	0.09	3	29	3	29	y	ENSMUSG00000026867.20	Gapvd1	chr2	protein_coding	GTPase activating protein and VPS9 domains 1
known_NIR_11299	chr2	34596151	34596753	-	34596151	34596710	A5SS	ENSMUST00000102800.9	known	0.03	1	31	1	31	n	0.05	1	21	1	21	n	0.00	0	54	0	54	n	0.00	0	37	0	37	n	0.15	8	44	8	44	y	0.05	1	18	1	18	n	0.08	3	33	3	33	y	0.00	0	23	0	23	n	0.00	0	16	0	16	n	0.06	2	33	2	33	y	0.00	0	28	0	28	n	0.00	0	27	0	27	n	ENSMUSG00000026867.20	Gapvd1	chr2	protein_coding	GTPase activating protein and VPS9 domains 1
known_NIR_11300	chr2	34605342	34607265	-	34605342	34607328	A5SS	ENSMUST00000102800.9	known	0.11	3	24	3	24	y	0.08	1	11	1	11	n	0.09	4	39	4	39	y	0.12	4	30	4	30	y	0.05	2	38	2	38	y	0.15	3	17	3	17	y	0.16	4	21	4	21	y	0.20	5	20	5	20	y	0.14	3	19	3	19	y	0.14	5	31	5	31	y	0.05	1	18	1	18	n	0.19	6	26	6	26	y	ENSMUSG00000026867.20	Gapvd1	chr2	protein_coding	GTPase activating protein and VPS9 domains 1
known_NIR_11301	chr2	34675737	34680515	-	34675740	34680515	A3SS	ENSMUST00000145903.8	known	0.18	6	28	6	28	y	0.16	5	27	5	27	y	0.20	11	44	11	44	y	0.15	4	22	4	22	y	0.22	12	43	12	43	y	0.15	4	22	4	22	y	0.13	4	27	4	27	y	0.26	6	17	6	17	y	0.11	3	24	3	24	y	0.18	7	31	7	31	y	0.21	5	19	5	19	y	0.14	5	32	5	32	y	ENSMUSG00000070953.14	Rabepk	chr2	protein_coding	Rab9 effector protein with kelch motifs
known_NIR_11302	chr2	34680667	34687387	-	34680667	34685184	A5SS&ES	ENSMUST00000140663.8	known	0.00	0	38	0	38	n	0.00	0	38	0	38	n	0.04	2	54	2	54	y	0.00	0	39	0	39	n	0.00	0	81	0	81	n	0.00	0	18	0	18	n	0.00	0	28	0	28	n	0.00	0	30	0	30	n	0.05	2	36	2	36	y	0.00	0	46	0	46	n	0.00	0	35	0	35	n	0.00	0	36	0	36	n	ENSMUSG00000070953.14	Rabepk	chr2	protein_coding	Rab9 effector protein with kelch motifs
known_NIR_11303	chr2	34680667	34687387	-	34680667;34685341	34685184;34687387	ES	ENSMUST00000145903.8	known	0.00	0	30.0	0	38;22	n	0.00	0	28.5	0	38;19	n	0.05	2	38.5	2	54;23	y	0.00	0	37.0	0	39;35	n	0.00	0	59.5	0	81;38	n	0.00	0	17.0	0	18;16	n	0.00	0	27.5	0	28;27	n	0.00	0	28.5	0	30;27	n	0.05	2	34.5	2	36;33	y	0.00	0	39.5	0	46;33	n	0.00	0	26.5	0	35;18	n	0.00	0	27.5	0	36;19	n	ENSMUSG00000070953.14	Rabepk	chr2	protein_coding	Rab9 effector protein with kelch motifs
known_NIR_11304	chr2	34685341	34687383	-	34685341	34687387	A5SS	ENSMUST00000145903.8	known	0.15	4	22	4	22	y	0.10	2	19	2	19	y	0.00	0	23	0	23	n	0.00	0	35	0	35	n	0.05	2	38	2	38	y	0.11	2	16	2	16	y	0.00	0	27	0	27	n	0.00	0	27	0	27	n	0.06	2	33	2	33	y	0.06	2	33	2	33	y	0.00	0	18	0	18	n	0.05	1	19	1	19	n	ENSMUSG00000070953.14	Rabepk	chr2	protein_coding	Rab9 effector protein with kelch motifs
known_NIR_11305	chr2	34687445	34689435	-	34687445	34689763	A5SS	ENSMUST00000145903.8	known	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.20	3	12	3	12	y	0.00	0	19	0	19	n	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.17	2	10	2	10	y	0.22	2	7	2	7	n	0.12	2	14	2	14	y	0.21	5	19	5	19	y	0.00	0	3	0	3	n	0.20	1	4	1	4	n	ENSMUSG00000070953.14	Rabepk	chr2	protein_coding	Rab9 effector protein with kelch motifs
known_NIR_11306	chr2	34712987	34715974	-	34713079	34715974	A3SS	ENSMUST00000028220.10	known	0.23	14	48	14	48	y	0.21	9	33	9	33	y	0.18	14	64	14	64	y	0.19	14	59	14	59	y	0.15	15	82	15	82	y	0.27	12	33	12	33	y	0.27	24	64	24	64	y	0.11	7	57	7	57	y	0.23	11	36	11	36	y	0.19	18	75	18	75	y	0.17	10	48	10	48	y	0.22	17	60	17	60	y	ENSMUSG00000035949.16	Fbxw2	chr2	protein_coding	F-box and WD-40 domain protein 2
known_NIR_11307	chr2	34713079	34715692	-	34713079	34715974	A5SS	ENSMUST00000028220.10	known	0.00	0	48	0	48	n	0.00	0	33	0	33	n	0.02	1	64	1	64	n	0.02	1	59	1	59	n	0.01	1	82	1	82	n	0.00	0	33	0	33	n	0.02	1	64	1	64	n	0.00	0	57	0	57	n	0.00	0	36	0	36	n	0.00	0	75	0	75	n	0.04	2	48	2	48	y	0.00	0	60	0	60	n	ENSMUSG00000035949.16	Fbxw2	chr2	protein_coding	F-box and WD-40 domain protein 2
known_NIR_11308	chr2	34742845	34746460	-	34742845;34744404	34744264;34746460	ES	ENSMUST00000028225.12	known	0.00	0	120.5	0	109;132	n	0.00	0	102.0	0	122;82	n	0.00	0	128.0	0	141;115	n	0.00	0	113.0	0	115;111	n	0.01	1	146.5	1	151;142	n	0.00	0	50.5	0	46;55	n	0.00	0	130.5	0	115;146	n	0.00	0	72.5	0	70;75	n	0.00	0	91.5	0	99;84	n	0.00	0	132.5	0	137;128	n	0.00	0	124.5	0	140;109	n	0.02	3	143.5	3	141;146	y	ENSMUSG00000026869.13	Psmd5	chr2	protein_coding	proteasome (prosome, macropain) 26S subunit, non-ATPase, 5
known_NIR_11309	chr2	34757049	34764657	-	34757049	34760762	5pMXE	ENSMUST00000028225.12	known	0.08	3	33	3	33	y	0.09	2	21	2	21	y	0.08	5	58	5	58	y	0.09	6	59	6	59	y	0.03	2	65	2	65	y	0.05	1	20	1	20	n	0.08	5	56	5	56	y	0.03	1	30	1	30	n	0.14	5	32	5	32	y	0.16	13	69	13	69	y	0.10	5	46	5	46	y	0.10	6	52	6	52	y	ENSMUSG00000026869.13	Psmd5	chr2	protein_coding	proteasome (prosome, macropain) 26S subunit, non-ATPase, 5
known_NIR_11310	chr2	34777809	34780292	+	34777809;34778183	34778134;34780292	ES	ENSMUST00000113068.9	known	0.06	8	122.0	8	101;143	y	0.06	5	77.5	5	69;86	y	0.04	3	74.5	3	59;90	y	0.05	7	123.5	7	102;145	y	0.09	19	181.5	19	174;189	y	0.03	2	60.5	2	48;73	y	0.09	15	151.0	15	126;176	y	0.06	5	74.0	5	64;84	y	0.07	8	107.5	8	95;120	y	0.06	11	166.5	11	126;207	y	0.03	5	152.0	5	144;160	y	0.09	16	163.5	16	139;188	y	ENSMUSG00000026870.20	Cutal	chr2	protein_coding	cutA divalent cation tolerance homolog-like
known_NIR_11311	chr2	34974734	34975183	-	34972503	34975183	A3SS	ENSMUST00000226631.2	known	0.03	53	1891	53	1891	y	0.03	49	1717	49	1717	y	0.03	21	589	21	589	y	0.03	51	1827	51	1827	y	0.03	78	2334	78	2334	y	0.05	27	494	27	494	y	0.02	57	2297	57	2297	y	0.03	27	807	27	807	y	0.03	57	1631	57	1631	y	0.02	51	2434	51	2434	y	0.02	49	1920	49	1920	y	0.03	76	2281	76	2281	y	ENSMUSG00000035875.16	AI182371	chr2	protein_coding	expressed sequence AI182371
known_NIR_11312	chr2	34976525	34978701	-	34976525	34978752	A5SS	ENSMUST00000226631.2	known	0.02	33	1571	33	1571	y	0.02	24	1319	24	1319	y	0.01	6	566	6	566	y	0.02	40	1876	40	1876	y	0.01	19	2066	19	2066	y	0.01	5	423	5	423	y	0.01	16	1914	16	1914	y	0.01	7	762	7	762	y	0.01	22	1495	22	1495	y	0.01	21	1989	21	1989	y	0.01	22	1463	22	1463	y	0.01	24	2018	24	2018	y	ENSMUSG00000035875.16	AI182371	chr2	protein_coding	expressed sequence AI182371
known_NIR_11313	chr2	34985935	34990577	-	34985935	34987900	A5SS&ES	ENSMUST00000154817.2	known	0.01	13	1325	13	1325	y	0.01	11	968	11	968	y	0.01	3	501	3	501	y	0.02	35	1589	35	1589	y	0.01	21	1828	21	1828	y	0.01	3	340	3	340	y	0.02	23	1502	23	1502	y	0.02	15	662	15	662	y	0.02	24	1210	24	1210	y	0.03	49	1707	49	1707	y	0.02	20	1206	20	1206	y	0.03	46	1727	46	1727	y	ENSMUSG00000035875.16	AI182371	chr2	protein_coding	expressed sequence AI182371
known_NIR_11314	chr2	34985935	34990577	-	34985935;34988095	34987900;34990577	ES	ENSMUST00000226631.2	known	0.01	13	913.5	13	1325;502	y	0.02	11	678.5	11	968;389	y	0.01	3	352.0	3	501;203	y	0.03	35	1166.5	35	1589;744	y	0.02	21	1364.5	21	1828;901	y	0.01	3	257.0	3	340;174	y	0.02	23	1109.5	23	1502;717	y	0.03	15	492.0	15	662;322	y	0.03	24	875.0	24	1210;540	y	0.04	49	1244.0	49	1707;781	y	0.02	20	857.5	20	1206;509	y	0.03	46	1269.0	46	1727;811	y	ENSMUSG00000035875.16	AI182371	chr2	protein_coding	expressed sequence AI182371
known_NIR_11315	chr2	34985935;34988092	34987900;34990577	-	34985935	34990577	cassetteExon	ENSMUST00000134940.9	known	0.99	863.5	13	1325;402	13	y	0.98	604.5	11	968;241	11	y	0.99	322.0	3	501;143	3	y	0.97	1066.5	35	1589;544	35	y	0.98	1194.0	21	1828;560	21	y	0.99	222.0	3	340;104	3	y	0.98	974.0	23	1502;446	23	y	0.97	439.0	15	662;216	15	y	0.97	791.0	24	1210;372	24	y	0.96	1108.0	49	1707;509	49	y	0.97	758.5	20	1206;311	20	y	0.96	1143.0	46	1727;559	46	y	ENSMUSG00000035875.16	AI182371	chr2	protein_coding	expressed sequence AI182371
known_NIR_11316	chr2	34988092	34990577	-	34988095	34990577	A3SS	ENSMUST00000226631.2	known	0.44	402	502	402	502	y	0.38	241	389	241	389	y	0.41	143	203	143	203	y	0.42	544	744	544	744	y	0.38	560	901	560	901	y	0.37	104	174	104	174	y	0.38	446	717	446	717	y	0.40	216	322	216	322	y	0.41	372	540	372	540	y	0.39	509	781	509	781	y	0.38	311	509	311	509	y	0.41	559	811	559	811	y	ENSMUSG00000035875.16	AI182371	chr2	protein_coding	expressed sequence AI182371
known_NIR_11317	chr2	35035248	35037247	+	35035248	35037244	A3SS	ENSMUST00000156933.8	known	0.44	4	5	4	5	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.21	3	11	3	11	y	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.40	4	6	4	6	y	0.75	6	2	6	2	n	0.20	2	8	2	8	y	0.00	0	8	0	8	n	0.18	2	9	2	9	y	0.00	0	14	0	14	n	ENSMUSG00000057110.16	Cntrl	chr2	protein_coding	centriolin
known_NIR_11318	chr2	35050673	35051941	+	35050673;35050929	35050803;35051941	ES	ENSMUST00000156933.8	known	0.00	0	12.0	0	8;16	n	0.10	1	9.5	1	9;10	n	0.05	1	17.5	1	16;19	n	0.00	0	12.5	0	7;18	n	0.11	3	24.0	3	22;26	y	0.11	1	8.0	1	6;10	n	0.04	1	24.0	1	26;22	n	0.15	1	5.5	1	4;7	n	0.08	1	11.5	1	8;15	n	0.00	0	10.5	0	13;8	n	0.18	2	9.0	2	8;10	y	0.08	1	11.5	1	14;9	n	ENSMUSG00000057110.16	Cntrl	chr2	protein_coding	centriolin
known_NIR_11319	chr2	35072580	35073405	-	35072459	35073405	A3SS	ENSMUST00000028238.15	known	0.00	1	262	1	262	n	0.01	3	228	3	228	y	0.04	12	273	12	273	y	0.01	2	338	2	338	y	0.01	3	428	3	428	y	0.03	6	177	6	177	y	0.02	8	384	8	384	y	0.03	6	184	6	184	y	0.03	7	228	7	228	y	0.02	9	395	9	395	y	0.00	1	311	1	311	n	0.01	6	397	6	397	y	ENSMUSG00000026878.18	Rab14	chr2	protein_coding	RAB14, member RAS oncogene family
known_NIR_11320	chr2	35081577;35082208	35081991;35082633	-	35081577	35082633	cassetteExon	ENSMUST00000028238.15	known	0.01	1.0	104	1;1	104	n	0.00	0.5	109	1;0	109	n	0.00	0.0	172	0;0	172	n	0.01	3.0	201	5;1	201	n	0.00	1.0	227	2;0	227	n	0.01	1.0	111	1;1	111	n	0.02	4.0	203	6;2	203	y	0.01	2.0	136	0;4	136	n	0.00	0.5	146	1;0	146	n	0.02	4.5	202	6;3	202	y	0.00	0.5	147	1;0	147	n	0.02	4.0	237	4;4	237	y	ENSMUSG00000026878.18	Rab14	chr2	protein_coding	RAB14, member RAS oncogene family
known_NIR_11321	chr2	35082691	35090693	-	35082691	35090772	A5SS	ENSMUST00000028238.15	known	0.00	0	107	0	107	n	0.00	0	98	0	98	n	0.00	0	146	0	146	n	0.00	0	176	0	176	n	0.01	2	201	2	201	y	0.00	0	81	0	81	n	0.00	0	145	0	145	n	0.00	0	116	0	116	n	0.00	0	132	0	132	n	0.00	0	145	0	145	n	0.00	0	127	0	127	n	0.01	1	188	1	188	n	ENSMUSG00000026878.18	Rab14	chr2	protein_coding	RAB14, member RAS oncogene family
known_NIR_11322	chr2	35090021	35090772	-	35082691	35090772	A3SS	ENSMUST00000028238.15	known	0.06	7	107	7	107	y	0.01	1	98	1	98	n	0.07	11	146	11	146	y	0.03	5	176	5	176	y	0.05	11	201	11	201	y	0.09	8	81	8	81	y	0.03	4	145	4	145	y	0.06	7	116	7	116	y	0.04	6	132	6	132	y	0.04	6	145	6	145	y	0.02	2	127	2	127	y	0.05	10	188	10	188	y	ENSMUSG00000026878.18	Rab14	chr2	protein_coding	RAB14, member RAS oncogene family
known_NIR_11323	chr2	35172613	35173917	+	35156915	35173917	A5SS	ENSMUST00000201185.4	known	0.86	6	1	6	1	n	1.00	3	0	3	0	n	0.54	7	6	7	6	y	1.00	1	0	1	0	n	0.77	17	5	17	5	y	0.88	7	1	7	1	n	0.92	55	5	55	5	y	1.00	2	0	2	0	n	0.80	4	1	4	1	n	0.75	6	2	6	2	n	0.80	4	1	4	1	n	0.77	10	3	10	3	y	ENSMUSG00000026879.15	Gsn	chr2	protein_coding	gelsolin
known_NIR_11324	chr2	35608950	35609931	+	35608950	35609865	A3SS	ENSMUST00000112986.9	known	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.33	3	6	3	6	n	0.14	1	6	1	6	n	0.22	2	7	2	7	n	0.20	1	4	1	4	n	0.22	2	7	2	7	n	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.13	2	13	2	13	y	0.00	0	2	0	2	n	0.25	1	3	1	3	n	ENSMUSG00000026883.18	Dab2ip	chr2	protein_coding	disabled 2 interacting protein
known_NIR_11325	chr2	35610753	35613041	+	35610753;35611425	35611273;35613041	ES	ENSMUST00000112986.9	known	0.00	0	9.5	0	11;8	n	0.40	2	3.0	2	4;2	n	0.00	0	14.5	0	15;14	n	0.00	0	19.0	0	18;20	n	0.00	0	21.0	0	15;27	n	0.00	0	7.0	0	2;12	n	0.08	1	11.0	1	15;7	n	0.00	0	8.5	0	10;7	n	0.00	0	8.0	0	1;15	n	0.11	2	16.5	2	19;14	y	0.00	0	13.0	0	13;13	n	0.00	0	8.5	0	11;6	n	ENSMUSG00000026883.18	Dab2ip	chr2	protein_coding	disabled 2 interacting protein
known_NIR_11326	chr2	35974087	35980974	-	35974087;35977483	35977380;35980974	ES	ENSMUST00000112961.10	known	0.00	0	1.0	0	0;2	n	0.82	7	1.5	7	0;3	n	0.75	3	1.0	3	1;1	n	0.60	6	4.0	6	3;5	y	0.65	10	5.5	10	5;6	y	0.75	3	1.0	3	2;0	n	0.67	3	1.5	3	1;2	n	0.40	1	1.5	1	3;0	n	0.67	1	0.5	1	0;1	n	0.76	8	2.5	8	3;2	y	0.33	1	2.0	1	2;2	n	0.73	4	1.5	4	2;1	n	ENSMUSG00000026890.20	Lhx6	chr2	protein_coding	LIM homeobox protein 6
known_NIR_11327	chr2	36012950	36017193	-	36012950	36017137	A5SS	ENSMUST00000028251.10	known	0.18	2	9	2	9	y	0.00	0	14	0	14	n	0.12	4	28	4	28	y	0.12	2	14	2	14	y	0.00	0	43	0	43	n	0.14	3	19	3	19	y	0.00	0	26	0	26	n	0.05	1	20	1	20	n	0.10	1	9	1	9	n	0.03	1	32	1	32	n	0.21	6	23	6	23	y	0.00	0	12	0	12	n	ENSMUSG00000026889.13	Rbm18	chr2	protein_coding	RNA binding motif protein 18
known_NIR_11328	chr2	36012950	36024147	-	36012950;36017263	36017137;36024147	ES	ENSMUST00000028251.10	known	0.00	0	15.5	0	9;22	n	0.24	6	18.5	6	14;23	y	0.08	3	33.0	3	28;38	y	0.00	0	14.5	0	14;15	n	0.08	4	44.5	4	43;46	y	0.08	2	23.0	2	19;27	y	0.06	2	30.0	2	26;34	y	0.00	0	20.5	0	20;21	n	0.06	1	15.0	1	9;21	n	0.09	3	31.0	3	32;30	y	0.04	1	22.5	1	23;22	n	0.16	3	16.0	3	12;20	y	ENSMUSG00000026889.13	Rbm18	chr2	protein_coding	RNA binding motif protein 18
known_NIR_11329	chr2	36012950	36024147	-	36017263	36024147	3pMXE	ENSMUST00000142809.2	known	0.00	0	22	0	22	n	0.21	6	23	6	23	y	0.07	3	38	3	38	y	0.00	0	15	0	15	n	0.08	4	46	4	46	y	0.07	2	27	2	27	y	0.06	2	34	2	34	y	0.00	0	21	0	21	n	0.05	1	21	1	21	n	0.09	3	30	3	30	y	0.04	1	22	1	22	n	0.13	3	20	3	20	y	ENSMUSG00000026889.13	Rbm18	chr2	protein_coding	RNA binding motif protein 18
known_NIR_11330	chr2	36012950;36017263	36017193;36024147	-	36012950	36024147	cassetteExon	ENSMUST00000122456.8	known	1.00	12.0	0	2;22	0	n	0.66	11.5	6	0;23	6	n	0.88	21.0	3	4;38	3	y	1.00	8.5	0	2;15	0	n	0.85	23.0	4	0;46	4	n	0.88	15.0	2	3;27	2	y	0.89	17.0	2	0;34	2	n	1.00	11.0	0	1;21	0	n	0.92	11.0	1	1;21	1	n	0.84	15.5	3	1;30	3	n	0.93	14.0	1	6;22	1	n	0.77	10.0	3	0;20	3	n	ENSMUSG00000026889.13	Rbm18	chr2	protein_coding	RNA binding motif protein 18
known_NIR_11331	chr2	36031669;36037461	36037365;36037915	+	36031669	36037915	cassetteExon	ENSMUST00000028250.9	known	0.01	1.0	66	1;1	66	n	0.04	3.5	77	5;2	77	y	0.08	6.0	68	3;9	68	y	0.04	3.5	89	4;3	89	y	0.03	3.0	99	3;3	99	y	0.05	2.0	42	4;0	42	n	0.02	2.5	114	3;2	114	y	0.03	1.5	43	3;0	43	n	0.07	4.0	51	5;3	51	y	0.01	1.5	111	0;3	111	n	0.03	2.5	78	5;0	78	n	0.04	3.5	88	3;4	88	y	ENSMUSG00000026887.10	Mrrf	chr2	protein_coding	mitochondrial ribosome recycling factor
known_NIR_11332	chr2	3705992	3773833	+	3649322	3773833	A5SS	ENSMUST00000226435.2	known	0.00	0	2	0	2	n	1.00	2	0	2	0	n	-	-	-	-	-	-	0.55	6	5	6	5	y	0.80	4	1	4	1	n	1.00	7	0	7	0	n	0.44	4	5	4	5	n	1.00	5	0	5	0	n	0.80	4	1	4	1	n	0.11	1	8	1	8	n	0.56	5	4	5	4	n	0.60	3	2	3	2	n	ENSMUSG00000026655.16	Fam107b	chr2	protein_coding	family with sequence similarity 107, member B
known_NIR_11333	chr2	3714673	3773833	+	3649322	3773833	A5SS	ENSMUST00000226435.2	known	0.93	28	2	28	2	y	1.00	30	0	30	0	n	1.00	19	0	19	0	n	0.90	44	5	44	5	y	0.96	25	1	25	1	n	1.00	19	0	19	0	n	0.86	30	5	30	5	y	1.00	13	0	13	0	n	0.96	26	1	26	1	n	0.88	60	8	60	8	y	0.89	34	4	34	4	y	0.95	35	2	35	2	y	ENSMUSG00000026655.16	Fam107b	chr2	protein_coding	family with sequence similarity 107, member B
known_NIR_11334	chr2	3714673	3773833	+	3705112	3773833	A5SS	ENSMUST00000115055.9	known	1.00	28	0	28	0	n	1.00	30	0	30	0	n	1.00	19	0	19	0	n	1.00	44	0	44	0	n	0.93	25	2	25	2	y	1.00	19	0	19	0	n	1.00	30	0	30	0	n	1.00	13	0	13	0	n	1.00	26	0	26	0	n	1.00	60	0	60	0	n	1.00	34	0	34	0	n	1.00	35	0	35	0	n	ENSMUSG00000026655.16	Fam107b	chr2	protein_coding	family with sequence similarity 107, member B
known_NIR_11335	chr2	3714673	3773833	+	3705992	3773833	A5SS	ENSMUST00000115054.9	known	1.00	28	0	28	0	n	0.94	30	2	30	2	y	1.00	19	0	19	0	n	0.88	44	6	44	6	y	0.86	25	4	25	4	y	0.73	19	7	19	7	y	0.88	30	4	30	4	y	0.72	13	5	13	5	y	0.87	26	4	26	4	y	0.98	60	1	60	1	n	0.87	34	5	34	5	y	0.92	35	3	35	3	y	ENSMUSG00000026655.16	Fam107b	chr2	protein_coding	family with sequence similarity 107, member B
known_NIR_11336	chr2	37247392	37249155	-	37247392	37248364	A5SS	ENSMUST00000112940.8	known	0.86	18	3	18	3	y	1.00	27	0	27	0	n	0.89	33	4	33	4	y	0.84	32	6	32	6	y	0.85	34	6	34	6	y	0.87	27	4	27	4	y	0.85	28	5	28	5	y	0.90	28	3	28	3	y	0.83	20	4	20	4	y	0.89	32	4	32	4	y	1.00	25	0	25	0	n	0.97	31	1	31	1	n	ENSMUSG00000009030.15	Pdcl	chr2	protein_coding	phosducin-like
known_NIR_11337	chr2	37247392;37248410	37248364;37249155	-	37247392	37249155	cassetteExon	ENSMUST00000009174.15	known	0.08	1.5	18	3;0	18	n	0.04	1.0	27	0;2	27	n	0.07	2.5	33	4;1	33	n	0.11	4.0	32	6;2	32	y	0.09	3.5	34	6;1	34	n	0.10	3.0	27	4;2	27	y	0.11	3.5	28	5;2	28	y	0.05	1.5	28	3;0	28	n	0.09	2.0	20	4;0	20	n	0.06	2.0	32	4;0	32	n	0.02	0.5	25	0;1	25	n	0.02	0.5	31	1;0	31	n	ENSMUSG00000009030.15	Pdcl	chr2	protein_coding	phosducin-like
known_NIR_11338	chr2	37265440	37266654	-	37265440	37266673	A5SS	ENSMUST00000112934.8	known	0.67	4	2	4	2	n	1.00	6	0	6	0	n	1.00	16	0	16	0	n	1.00	4	0	4	0	n	0.88	15	2	15	2	y	0.60	3	2	3	2	n	1.00	8	0	8	0	n	1.00	3	0	3	0	n	0.75	6	2	6	2	n	0.82	9	2	9	2	y	1.00	4	0	4	0	n	0.92	11	1	11	1	n	ENSMUSG00000075376.11	Rc3h2	chr2	protein_coding	ring finger and CCCH-type zinc finger domains 2
known_NIR_11339	chr2	37333468	37359528	+	37333468	37359389	A3SS	ENSMUST00000133434.8	known	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.33	4	8	4	8	y	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.20	1	4	1	4	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.10	1	9	1	9	n	0.29	5	12	5	12	y	0.38	3	5	3	5	n	0.33	2	4	2	4	n	ENSMUSG00000035437.16	Rabgap1	chr2	protein_coding	RAB GTPase activating protein 1
known_NIR_11340	chr2	37342313	37359389	+	37333468	37359389	A5SS	ENSMUST00000133434.8	known	0.00	0	3	0	3	n	0.40	2	3	2	3	n	0.38	5	8	5	8	y	0.25	3	9	3	9	y	0.18	3	14	3	14	y	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.25	3	9	3	9	y	0.08	1	12	1	12	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	ENSMUSG00000035437.16	Rabgap1	chr2	protein_coding	RAB GTPase activating protein 1
known_NIR_11341	chr2	37474118	37476522	-	37470818	37476522	A3SS	ENSMUST00000183690.8	known	0.98	54	1	54	1	n	0.95	40	2	40	2	y	1.00	80	0	80	0	n	0.98	46	1	46	1	n	0.90	76	8	76	8	y	0.97	67	2	67	2	y	0.91	64	6	64	6	y	0.88	38	5	38	5	y	0.96	47	2	47	2	y	0.90	72	8	72	8	y	0.94	63	4	63	4	y	0.90	46	5	46	5	y	ENSMUSG00000026915.17	Strbp	chr2	protein_coding	spermatid perinuclear RNA binding protein
known_NIR_11342	chr2	37537297	37593679	-	37537297	37593204	5pMXE	ENSMUST00000072186.12	known	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.06	2	32	2	32	y	0.09	2	20	2	20	y	0.05	1	18	1	18	n	0.12	2	15	2	15	y	0.33	2	4	2	4	n	0.12	1	7	1	7	n	0.00	0	3	0	3	n	0.14	2	12	2	12	y	0.12	2	15	2	15	y	0.06	1	17	1	17	n	ENSMUSG00000026915.17	Strbp	chr2	protein_coding	spermatid perinuclear RNA binding protein
known_NIR_11343	chr2	37692285;37695212	37695084;37706928	-	37692285	37706928	cassetteExon	ENSMUST00000102787.10	known	0.12	2.0	14	0;4	14	n	0.05	0.5	9	0;1	9	n	0.19	4.5	19	4;5	19	y	0.07	2.0	27	3;1	27	n	0.01	0.5	35	1;0	35	n	0.04	0.5	11	1;0	11	n	0.08	2.0	24	3;1	24	n	0.00	0.0	10	0;0	10	n	0.10	1.5	14	2;1	14	n	0.02	0.5	27	1;0	27	n	0.07	1.5	21	3;0	21	n	0.05	1.5	29	1;2	29	n	ENSMUSG00000035392.18	Dennd1a	chr2	protein_coding	DENN/MADD domain containing 1A
known_NIR_11344	chr2	3771798	3773833	+	3649322	3773833	A5SS	ENSMUST00000226435.2	known	0.60	3	2	3	2	n	1.00	4	0	4	0	n	1.00	28	0	28	0	n	0.62	8	5	8	5	y	0.83	5	1	5	1	n	1.00	8	0	8	0	n	0.38	3	5	3	5	n	1.00	5	0	5	0	n	0.89	8	1	8	1	n	0.69	18	8	18	8	y	0.64	7	4	7	4	y	0.60	3	2	3	2	n	ENSMUSG00000026655.16	Fam107b	chr2	protein_coding	family with sequence similarity 107, member B
known_NIR_11345	chr2	3771798	3773833	+	3705992	3773833	A5SS	ENSMUST00000115054.9	known	1.00	3	0	3	0	n	0.67	4	2	4	2	n	1.00	28	0	28	0	n	0.57	8	6	8	6	y	0.56	5	4	5	4	n	0.53	8	7	8	7	y	0.43	3	4	3	4	n	0.50	5	5	5	5	y	0.67	8	4	8	4	y	0.95	18	1	18	1	n	0.58	7	5	7	5	y	0.50	3	3	3	3	n	ENSMUSG00000026655.16	Fam107b	chr2	protein_coding	family with sequence similarity 107, member B
known_NIR_11346	chr2	3771798	3773833	+	3714673	3773833	A5SS	ENSMUST00000027965.11	known	0.10	3	28	3	28	y	0.12	4	30	4	30	y	0.60	28	19	28	19	y	0.15	8	44	8	44	y	0.17	5	25	5	25	y	0.30	8	19	8	19	y	0.09	3	30	3	30	y	0.28	5	13	5	13	y	0.24	8	26	8	26	y	0.23	18	60	18	60	y	0.17	7	34	7	34	y	0.08	3	35	3	35	y	ENSMUSG00000026655.16	Fam107b	chr2	protein_coding	family with sequence similarity 107, member B
known_NIR_11347	chr2	3774016	3779457	+	3774016	3779455	A3SS	ENSMUST00000226435.2	known	0.00	0	48	0	48	n	0.00	0	57	0	57	n	0.00	0	58	0	58	n	0.00	0	100	0	100	n	0.04	3	66	3	66	y	0.00	0	34	0	34	n	0.06	6	87	6	87	y	0.00	0	58	0	58	n	0.00	0	87	0	87	n	0.05	6	122	6	122	y	0.00	0	72	0	72	n	0.00	0	82	0	82	n	ENSMUSG00000026655.16	Fam107b	chr2	protein_coding	family with sequence similarity 107, member B
known_NIR_11348	chr2	38016660	38049819	-	38016660;38026987	38026938;38049819	ES	ENSMUST00000102787.10	known	0.33	3	6.0	3	5;7	y	0.00	0	12.0	0	12;12	n	0.15	2	11.0	2	13;9	y	0.00	0	10.0	0	13;7	n	0.15	2	11.0	2	15;7	y	0.15	1	5.5	1	6;5	n	0.06	1	17.0	1	16;18	n	0.00	0	9.5	0	14;5	n	0.06	1	17.0	1	18;16	n	0.13	3	20.5	3	22;19	y	0.10	1	9.0	1	8;10	n	0.10	2	19.0	2	21;17	y	ENSMUSG00000035392.18	Dennd1a	chr2	protein_coding	DENN/MADD domain containing 1A
known_NIR_11349	chr2	38016660;38049862	38049819;38133414	-	38016660;38026987	38026938;38133414	MXE	ENSMUST00000140552.8	known	0.73	9.5	3.5	3;16	5;2	y	0.48	5.5	6.0	0;11	12;0	n	0.52	7.5	7.0	2;13	13;1	n	0.46	6.0	7.0	0;12	13;1	n	0.53	8.5	7.5	2;15	15;0	n	0.57	4.0	3.0	1;7	6;0	n	0.66	15.5	8.0	1;30	16;0	n	0.39	4.5	7.0	0;9	14;0	n	0.40	6.0	9.0	1;11	18;0	n	0.44	10.0	12.5	3;17	22;3	y	0.60	6.0	4.0	1;11	8;0	n	0.52	11.5	10.5	2;21	21;0	n	ENSMUSG00000035392.18	Dennd1a	chr2	protein_coding	DENN/MADD domain containing 1A
known_NIR_11350	chr2	38026987	38133414	-	38026987;38049862	38049819;38133414	ES	ENSMUST00000102787.10	known	0.15	2	11.5	2	7;16	y	0.00	0	11.5	0	12;11	n	0.08	1	11.0	1	9;13	n	0.10	1	9.5	1	7;12	n	0.00	0	11.0	0	7;15	n	0.00	0	6.0	0	5;7	n	0.00	0	24.0	0	18;30	n	0.00	0	7.0	0	5;9	n	0.00	0	13.5	0	16;11	n	0.14	3	18.0	3	19;17	y	0.00	0	10.5	0	10;11	n	0.00	0	19.0	0	17;21	n	ENSMUSG00000035392.18	Dennd1a	chr2	protein_coding	DENN/MADD domain containing 1A
known_NIR_11351	chr2	38026987	38133414	-	38049862	38133414	A3SS&ES	ENSMUST00000130472.8	known	0.11	2	16	2	16	y	0.00	0	11	0	11	n	0.07	1	13	1	13	n	0.08	1	12	1	12	n	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.00	0	30	0	30	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.15	3	17	3	17	y	0.00	0	11	0	11	n	0.00	0	21	0	21	n	ENSMUSG00000035392.18	Dennd1a	chr2	protein_coding	DENN/MADD domain containing 1A
known_NIR_11352	chr2	38401991	38440565	+	38401805	38440565	A5SS	ENSMUST00000054234.10	known	0.11	9	73	9	73	y	0.05	2	41	2	41	y	0.01	2	140	2	140	y	0.06	5	83	5	83	y	0.05	6	121	6	121	y	0.01	1	102	1	102	n	0.09	7	75	7	75	y	0.11	10	84	10	84	y	0.05	2	37	2	37	y	0.01	1	73	1	73	n	0.05	4	75	4	75	y	0.05	3	63	3	63	y	ENSMUSG00000026749.12	Nek6	chr2	protein_coding	NIMA (never in mitosis gene a)-related expressed kinase 6
known_NIR_11353	chr2	38404876	38440565	+	38401805	38440565	A5SS	ENSMUST00000054234.10	known	0.00	0	73	0	73	n	0.00	0	41	0	41	n	0.00	0	140	0	140	n	0.00	0	83	0	83	n	0.02	2	121	2	121	y	0.01	1	102	1	102	n	0.00	0	75	0	75	n	0.00	0	84	0	84	n	0.00	0	37	0	37	n	0.00	0	73	0	73	n	0.01	1	75	1	75	n	0.02	1	63	1	63	n	ENSMUSG00000026749.12	Nek6	chr2	protein_coding	NIMA (never in mitosis gene a)-related expressed kinase 6
known_NIR_11354	chr2	38440683	38447868	+	38440683	38447828	A3SS	ENSMUST00000054234.10	known	0.00	0	150	0	150	n	0.07	5	69	5	69	y	0.04	11	265	11	265	y	0.00	0	143	0	143	n	0.00	0	183	0	183	n	0.04	8	173	8	173	y	0.01	2	145	2	145	y	0.00	0	148	0	148	n	0.00	0	88	0	88	n	0.04	6	134	6	134	y	0.00	0	122	0	122	n	0.05	5	94	5	94	y	ENSMUSG00000026749.12	Nek6	chr2	protein_coding	NIMA (never in mitosis gene a)-related expressed kinase 6
known_NIR_11355	chr2	38898336	38903129	+	38895421	38903129	A5SS	ENSMUST00000141467.8	known	1.00	11	0	11	0	n	1.00	8	0	8	0	n	0.78	7	2	7	2	n	0.89	16	2	16	2	y	0.93	14	1	14	1	n	0.57	4	3	4	3	n	0.91	20	2	20	2	y	0.50	3	3	3	3	n	1.00	12	0	12	0	n	0.78	21	6	21	6	y	0.76	13	4	13	4	y	0.70	14	6	14	6	y	ENSMUSG00000026755.15	Arpc5l	chr2	protein_coding	actin related protein 2/3 complex, subunit 5-like
known_NIR_11356	chr2	38898336	38903735	+	38903199	38903735	A5SS&ES	ENSMUST00000141467.8	known	0.06	7	117	7	117	y	0.08	11	123	11	123	y	0.06	10	163	10	163	y	0.07	10	134	10	134	y	0.05	9	178	9	178	y	0.09	9	87	9	87	y	0.03	7	194	7	194	y	0.06	7	105	7	105	y	0.04	6	144	6	144	y	0.05	10	193	10	193	y	0.09	12	125	12	125	y	0.04	7	169	7	169	y	ENSMUSG00000026755.15	Arpc5l	chr2	protein_coding	actin related protein 2/3 complex, subunit 5-like
known_NIR_11357	chr2	38898336;38903199	38903129;38903735	+	38898336	38903735	cassetteExon	ENSMUST00000204825.3	known	0.90	64.0	7	11;117	7	y	0.86	65.5	11	8;123	11	y	0.89	85.0	10	7;163	10	y	0.88	75.0	10	16;134	10	y	0.91	96.0	9	14;178	9	y	0.83	45.5	9	4;87	9	y	0.94	107.0	7	20;194	7	y	0.89	54.0	7	3;105	7	y	0.93	78.0	6	12;144	6	y	0.91	107.0	10	21;193	10	y	0.85	69.0	12	13;125	12	y	0.93	91.5	7	14;169	7	y	ENSMUSG00000026755.15	Arpc5l	chr2	protein_coding	actin related protein 2/3 complex, subunit 5-like
known_NIR_11358	chr2	38907893	38908351	-	38907926	38908351	A3SS	ENSMUST00000124463.2	known	1.00	5	0	5	0	n	0.67	4	2	4	2	n	1.00	4	0	4	0	n	1.00	5	0	5	0	n	0.60	6	4	6	4	y	1.00	6	0	6	0	n	1.00	8	0	8	0	n	0.33	2	4	2	4	n	0.67	2	1	2	1	n	1.00	9	0	9	0	n	1.00	5	0	5	0	n	0.67	4	2	4	2	n	ENSMUSG00000026754.17	Golga1	chr2	protein_coding	golgi autoantigen, golgin subfamily a, 1
known_NIR_11359	chr2	38937778	38940171	-	38937778;38938450	38938322;38940171	ES	ENSMUST00000039165.15	known	0.13	3	19.5	3	17;22	y	0.17	3	14.5	3	15;14	y	0.04	1	25.0	1	23;27	n	0.26	6	17.5	6	15;20	y	0.10	3	27.0	3	33;21	y	0.00	0	21.0	0	23;19	n	0.00	0	18.0	0	15;21	n	0.00	0	22.0	0	19;25	n	0.22	3	10.5	3	16;5	y	0.21	4	15.0	4	18;12	y	0.15	3	16.5	3	17;16	y	0.27	6	16.5	6	20;13	y	ENSMUSG00000026754.17	Golga1	chr2	protein_coding	golgi autoantigen, golgin subfamily a, 1
known_NIR_11360	chr2	38954735	38955437	-	38954735	38955393	A5SS	ENSMUST00000039165.15	known	0.29	2	5	2	5	n	0.00	0	8	0	8	n	0.28	5	13	5	13	y	0.17	2	10	2	10	y	0.58	14	10	14	10	y	0.55	6	5	6	5	y	0.43	6	8	6	8	y	0.38	5	8	5	8	y	0.50	5	5	5	5	y	0.38	6	10	6	10	y	0.71	5	2	5	2	n	0.55	6	5	6	5	y	ENSMUSG00000026754.17	Golga1	chr2	protein_coding	golgi autoantigen, golgin subfamily a, 1
known_NIR_11361	chr2	39090133	39090899	-	39090133	39094845	A5SS	ENSMUST00000028087.6	known	0.00	0	76	0	76	n	0.00	0	78	0	78	n	0.00	0	154	0	154	n	0.00	0	120	0	120	n	0.00	0	163	0	163	n	0.00	0	63	0	63	n	0.02	2	131	2	131	y	0.00	0	94	0	94	n	0.00	0	84	0	84	n	0.00	0	118	0	118	n	0.00	0	79	0	79	n	0.00	0	112	0	112	n	ENSMUSG00000026753.6	Ppp6c	chr2	protein_coding	protein phosphatase 6, catalytic subunit
known_NIR_11362	chr2	39096729	39100970	-	39090133	39100970	A3SS	ENSMUST00000204257.3	known	0.98	58	1	58	1	n	0.95	55	3	55	3	y	0.99	126	1	126	1	n	1.00	70	0	70	0	n	0.99	112	1	112	1	n	0.98	52	1	52	1	n	1.00	98	0	98	0	n	1.00	73	0	73	0	n	0.96	46	2	46	2	y	1.00	96	0	96	0	n	0.97	71	2	71	2	y	0.99	102	1	102	1	n	ENSMUSG00000026753.6	Ppp6c	chr2	protein_coding	protein phosphatase 6, catalytic subunit
known_NIR_11363	chr2	39101065	39115820	-	39101065	39116179	A5SS	ENSMUST00000028087.6	known	0.10	9	82	9	82	y	0.08	4	46	4	46	y	0.09	12	117	12	117	y	0.11	9	75	9	75	y	0.14	16	96	16	96	y	0.06	3	49	3	49	y	0.09	10	98	10	98	y	0.10	8	75	8	75	y	0.18	10	45	10	45	y	0.16	15	80	15	80	y	0.08	5	58	5	58	y	0.09	9	90	9	90	y	ENSMUSG00000026753.6	Ppp6c	chr2	protein_coding	protein phosphatase 6, catalytic subunit
known_NIR_11364	chr2	43489654	43492255	+	43489654;43490808	43490737;43492255	ES	ENSMUST00000028223.9	known	0.13	44	282.0	44	242;322	y	0.12	24	179.5	24	185;174	y	0.04	8	211.0	8	210;212	y	0.13	59	401.5	59	383;420	y	0.07	27	352.5	27	338;367	y	0.04	6	128.0	6	133;123	y	0.07	22	286.5	22	278;295	y	0.08	16	182.0	16	171;193	y	0.09	34	352.0	34	330;374	y	0.09	43	418.5	43	408;429	y	0.14	40	253.0	40	258;248	y	0.13	85	568.0	85	552;584	y	ENSMUSG00000026866.17	Kynu	chr2	protein_coding	kynureninase
known_NIR_11365	chr2	43494300	43495623	+	43494300	43518965	A3SS	ENSMUST00000028223.9	known	0.01	2	226	2	226	y	0.02	3	155	3	155	y	0.00	0	130	0	130	n	0.01	2	338	2	338	y	0.01	2	276	2	276	y	0.03	3	117	3	117	y	0.02	5	255	5	255	y	0.02	3	132	3	132	y	0.00	0	281	0	281	n	0.01	2	334	2	334	y	0.00	1	246	1	246	n	0.01	3	384	3	384	y	ENSMUSG00000026866.17	Kynu	chr2	protein_coding	kynureninase
known_NIR_11366	chr2	43521631	43524964	+	43521631	43561371	A3SS	ENSMUST00000028223.9	known	0.01	4	324	4	324	y	0.01	4	273	4	273	y	0.02	4	184	4	184	y	0.03	15	421	15	421	y	0.02	7	359	7	359	y	0.04	6	137	6	137	y	0.01	5	359	5	359	y	0.01	2	176	2	176	y	0.02	8	353	8	353	y	0.01	5	447	5	447	y	0.01	5	340	5	340	y	0.02	10	571	10	571	y	ENSMUSG00000026866.17	Kynu	chr2	protein_coding	kynureninase
known_NIR_11367	chr2	44681613	44715363	-	44646447	44715363	A3SS	ENSMUST00000112810.8	known	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.00	0	17	0	17	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.15	2	11	2	11	y	ENSMUSG00000036890.14	Gtdc1	chr2	protein_coding	glycosyltransferase-like domain containing 1
known_NIR_11368	chr2	4648595	4650380	-	4648575	4650380	A3SS	ENSMUST00000035721.14	known	0.02	1	40	1	40	n	0.04	1	27	1	27	n	0.05	3	54	3	54	y	0.02	1	62	1	62	n	0.07	4	55	4	55	y	0.00	0	28	0	28	n	0.02	1	53	1	53	n	0.00	0	26	0	26	n	0.10	4	35	4	35	y	0.04	2	54	2	54	y	0.07	2	25	2	25	y	0.03	2	72	2	72	y	ENSMUSG00000039449.15	Prpf18	chr2	protein_coding	pre-mRNA processing factor 18
known_NIR_11369	chr2	4757802	4767893	+	4757802	4767889	A3SS	ENSMUST00000184139.8	known	0.00	0	16	0	16	n	0.00	0	22	0	22	n	0.00	0	15	0	15	n	0.00	0	19	0	19	n	0.04	1	25	1	25	n	0.00	0	17	0	17	n	0.25	3	9	3	9	y	0.00	0	24	0	24	n	0.08	1	12	1	12	n	0.00	0	20	0	20	n	0.08	1	12	1	12	n	0.00	0	22	0	22	n	ENSMUSG00000048186.15	Bend7	chr2	protein_coding	BEN domain containing 7
known_NIR_11370	chr2	4793386	4801341	+	4793386	4801344	A3SS	ENSMUST00000184139.8	known	0.61	11	7	11	7	y	0.69	9	4	9	4	y	0.56	14	11	14	11	y	0.62	10	6	10	6	y	0.59	16	11	16	11	y	0.55	6	5	6	5	y	0.52	12	11	12	11	y	0.40	6	9	6	9	y	0.42	5	7	5	7	y	0.21	3	11	3	11	y	0.80	8	2	8	2	y	0.64	16	9	16	9	y	ENSMUSG00000048186.15	Bend7	chr2	protein_coding	BEN domain containing 7
known_NIR_11371	chr2	48800254	48802574	-	48800306	48802574	A3SS	ENSMUST00000028098.11	known	0.23	7	23	7	23	y	0.17	5	25	5	25	y	0.15	6	35	6	35	y	0.09	4	43	4	43	y	0.09	5	50	5	50	y	0.07	2	27	2	27	y	0.04	2	45	2	45	y	0.13	3	20	3	20	y	0.26	9	26	9	26	y	0.11	4	32	4	32	y	0.04	1	25	1	25	n	0.09	4	43	4	43	y	ENSMUSG00000026761.13	Orc4	chr2	protein_coding	origin recognition complex, subunit 4
known_NIR_11372	chr2	48800257	48802574	-	48800254	48802574	A3SS	ENSMUST00000154784.8	known	0.36	4	7	4	7	y	0.58	7	5	7	5	y	0.40	4	6	4	6	y	0.60	6	4	6	4	y	0.71	12	5	12	5	y	0.71	5	2	5	2	n	0.71	5	2	5	2	n	0.00	0	3	0	3	n	0.40	6	9	6	9	y	0.64	7	4	7	4	y	0.67	2	1	2	1	n	0.43	3	4	3	4	n	ENSMUSG00000026761.13	Orc4	chr2	protein_coding	origin recognition complex, subunit 4
known_NIR_11373	chr2	48800257	48802574	-	48800306	48802574	A3SS	ENSMUST00000028098.11	known	0.15	4	23	4	23	y	0.22	7	25	7	25	y	0.10	4	35	4	35	y	0.12	6	43	6	43	y	0.19	12	50	12	50	y	0.16	5	27	5	27	y	0.10	5	45	5	45	y	0.00	0	20	0	20	n	0.19	6	26	6	26	y	0.18	7	32	7	32	y	0.07	2	25	2	25	y	0.07	3	43	3	43	y	ENSMUSG00000026761.13	Orc4	chr2	protein_coding	origin recognition complex, subunit 4
known_NIR_11374	chr2	48822609	48823092	-	48819741	48823092	A3SS	ENSMUST00000028098.11	known	0.00	0	35	0	35	n	0.07	2	26	2	26	y	0.00	0	27	0	27	n	0.14	3	19	3	19	y	0.07	3	39	3	39	y	0.10	2	19	2	19	y	0.19	6	26	6	26	y	0.05	1	18	1	18	n	0.07	2	27	2	27	y	0.09	3	31	3	31	y	0.27	8	22	8	22	y	0.13	4	27	4	27	y	ENSMUSG00000026761.13	Orc4	chr2	protein_coding	origin recognition complex, subunit 4
known_NIR_11375	chr2	48830412	48839106	-	48830412	48839129	A5SS	ENSMUST00000028098.11	known	0.10	1	9	1	9	n	0.00	0	6	0	6	n	0.07	1	14	1	14	n	0.09	2	21	2	21	y	0.00	0	27	0	27	n	0.00	0	12	0	12	n	0.06	1	16	1	16	n	0.00	0	11	0	11	n	0.07	1	14	1	14	n	0.19	3	13	3	13	y	0.00	0	22	0	22	n	0.11	2	16	2	16	y	ENSMUSG00000026761.13	Orc4	chr2	protein_coding	origin recognition complex, subunit 4
known_NIR_11376	chr2	48830412	48839970	-	48830412	48839129	5pMXE	ENSMUST00000028098.11	known	0.25	3	9	3	9	y	0.00	0	6	0	6	n	0.07	1	14	1	14	n	0.00	0	21	0	21	n	0.07	2	27	2	27	y	0.20	3	12	3	12	y	0.06	1	16	1	16	n	0.08	1	11	1	11	n	0.07	1	14	1	14	n	0.13	2	13	2	13	y	0.08	2	22	2	22	y	0.24	5	16	5	16	y	ENSMUSG00000026761.13	Orc4	chr2	protein_coding	origin recognition complex, subunit 4
known_NIR_11377	chr2	48830412	48840130	-	48830412	48839129	5pMXE	ENSMUST00000028098.11	known	0.10	1	9	1	9	n	0.25	2	6	2	6	n	0.12	2	14	2	14	y	0.09	2	21	2	21	y	0.16	5	27	5	27	y	0.14	2	12	2	12	y	0.24	5	16	5	16	y	0.15	2	11	2	11	y	0.00	0	14	0	14	n	0.07	1	13	1	13	n	0.12	3	22	3	22	y	0.06	1	16	1	16	n	ENSMUSG00000026761.13	Orc4	chr2	protein_coding	origin recognition complex, subunit 4
known_NIR_11378	chr2	4887386	4889143	+	4886671	4889143	A5SS	ENSMUST00000027973.14	known	0.17	2	10	2	10	y	0.24	4	13	4	13	y	0.04	1	24	1	24	n	0.33	7	14	7	14	y	0.40	8	12	8	12	y	0.17	2	10	2	10	y	0.07	1	13	1	13	n	0.00	0	8	0	8	n	0.18	2	9	2	9	y	0.09	2	20	2	20	y	0.36	5	9	5	9	y	0.19	3	13	3	13	y	ENSMUSG00000026662.14	Sephs1	chr2	protein_coding	selenophosphate synthetase 1
known_NIR_11379	chr2	4889416	4896398	+	4889416	4893994	3pMXE	ENSMUST00000144565.2	known	0.00	0	46	0	46	n	0.00	0	50	0	50	n	0.03	2	75	2	75	y	0.03	2	68	2	68	y	0.00	0	96	0	96	n	0.07	3	38	3	38	y	0.00	0	74	0	74	n	0.00	0	45	0	45	n	0.02	1	46	1	46	n	0.04	3	81	3	81	y	0.03	1	38	1	38	n	0.04	3	78	3	78	y	ENSMUSG00000026662.14	Sephs1	chr2	protein_coding	selenophosphate synthetase 1
known_NIR_11380	chr2	4889416	4896398	+	4889416;4894097	4893994;4896398	ES	ENSMUST00000027973.14	known	0.00	0	42.0	0	46;38	n	0.00	0	44.0	0	50;38	n	0.03	2	74.0	2	75;73	y	0.04	2	55.0	2	68;42	y	0.00	0	87.5	0	96;79	n	0.08	3	35.5	3	38;33	y	0.00	0	70.5	0	74;67	n	0.00	0	42.5	0	45;40	n	0.02	1	42.5	1	46;39	n	0.04	3	76.0	3	81;71	y	0.03	1	36.5	1	38;35	n	0.05	3	62.5	3	78;47	y	ENSMUSG00000026662.14	Sephs1	chr2	protein_coding	selenophosphate synthetase 1
known_NIR_11381	chr2	48908337	48989729	+	48908337;48976664	48976602;48989729	ES	ENSMUST00000112745.8	known	0.42	5	7.0	5	11;3	y	0.00	0	1.0	0	0;2	n	0.22	2	7.0	2	6;8	y	0.11	1	8.0	1	11;5	n	0.00	0	4.0	0	5;3	n	0.00	0	4.0	0	5;3	n	0.11	1	8.0	1	7;9	n	0.00	0	4.5	0	4;5	n	0.00	0	4.0	0	1;7	n	0.33	1	2.0	1	2;2	n	0.33	1	2.0	1	3;1	n	0.00	0	4.5	0	3;6	n	ENSMUSG00000036792.13	Mbd5	chr2	protein_coding	methyl-CpG binding domain protein 5
known_NIR_11382	chr2	49164786	49168593	+	49164786	49188668	A3SS	ENSMUST00000122841.8	known	0.40	2	3	2	3	n	0.00	0	1	0	1	n	0.56	5	4	5	4	n	0.67	2	1	2	1	n	1.00	2	0	2	0	n	0.67	2	1	2	1	n	0.33	1	2	1	2	n	0.83	5	1	5	1	n	1.00	1	0	1	0	n	0.50	5	5	5	5	y	0.00	0	3	0	3	n	1.00	2	0	2	0	n	ENSMUSG00000036792.13	Mbd5	chr2	protein_coding	methyl-CpG binding domain protein 5
known_NIR_11383	chr2	49164786	49188668	+	49164786;49169795	49168593;49188668	ES	ENSMUST00000112754.8	known	0.55	3	2.5	3	2;3	n	0.40	1	1.5	1	0;3	n	0.36	4	7.0	4	5;9	y	0.50	1	1.0	1	2;0	n	0.00	0	1.0	0	2;0	n	0.33	1	2.0	1	2;2	n	0.57	2	1.5	2	1;2	n	0.17	1	5.0	1	5;5	n	0.00	0	0.5	0	1;0	n	0.50	5	5.0	5	5;5	y	0.86	3	0.5	3	0;1	n	0.00	0	2.0	0	2;2	n	ENSMUSG00000036792.13	Mbd5	chr2	protein_coding	methyl-CpG binding domain protein 5
known_NIR_11384	chr2	49169795	49188668	+	49164786	49188668	A5SS	ENSMUST00000122841.8	known	0.50	3	3	3	3	n	0.75	3	1	3	1	n	0.69	9	4	9	4	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	n	0.50	2	2	2	2	n	0.83	5	1	5	1	n	-	-	-	-	-	-	0.50	5	5	5	5	y	0.25	1	3	1	3	n	1.00	2	0	2	0	n	ENSMUSG00000036792.13	Mbd5	chr2	protein_coding	methyl-CpG binding domain protein 5
known_NIR_11385	chr2	49420155	49425267	+	49420155;49422247	49422056;49425267	ES	ENSMUST00000092123.11	known	0.00	0	4.5	0	3;6	n	0.00	0	7.0	0	6;8	n	0.22	4	14.5	4	20;9	y	0.06	1	15.0	1	19;11	n	0.07	1	12.5	1	6;19	n	0.00	0	9.0	0	9;9	n	0.07	1	14.0	1	9;19	n	0.00	0	12.0	0	13;11	n	0.14	1	6.0	1	7;5	n	0.06	1	15.0	1	10;20	n	0.00	0	7.5	0	5;10	n	0.19	3	13.0	3	10;16	y	ENSMUSG00000069495.13	Epc2	chr2	protein_coding	enhancer of polycomb homolog 2
known_NIR_11386	chr2	50170414	50171115	-	50170414;50170670	50170585;50171115	ES	ENSMUST00000147345.8	known	0.96	242	9.0	242	11;7	y	0.94	268	18.0	268	21;15	y	0.96	624	23.5	624	28;19	y	0.95	271	14.0	271	18;10	y	0.95	365	21.0	365	31;11	y	0.98	300	5.0	300	9;1	n	0.96	425	18.5	425	20;17	y	0.93	243	19.0	243	20;18	y	0.95	230	13.0	230	15;11	y	0.96	360	15.5	360	13;18	y	0.97	353	9.5	353	10;9	y	0.98	280	6.0	280	8;4	y	ENSMUSG00000026766.17	Mmadhc	chr2	protein_coding	methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria
known_NIR_11387	chr2	50182925	50186264	-	50182910	50186264	A3SS	ENSMUST00000147345.8	known	0.60	6	4	6	4	y	0.54	7	6	7	6	y	0.38	15	25	15	25	y	0.50	5	5	5	5	y	0.42	5	7	5	7	y	0.10	1	9	1	9	n	0.37	10	17	10	17	y	0.12	2	14	2	14	y	0.33	4	8	4	8	y	0.25	3	9	3	9	y	0.60	6	4	6	4	y	0.33	5	10	5	10	y	ENSMUSG00000026766.17	Mmadhc	chr2	protein_coding	methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria
known_NIR_11388	chr2	50182925	50186264	-	50182965	50186264	A3SS	ENSMUST00000102769.11	known	0.06	6	103	6	103	y	0.05	7	138	7	138	y	0.04	15	339	15	339	y	0.03	5	157	5	157	y	0.03	5	169	5	169	y	0.00	1	200	1	200	n	0.04	10	226	10	226	y	0.01	2	139	2	139	y	0.04	4	103	4	103	y	0.01	3	204	3	204	y	0.04	6	164	6	164	y	0.03	5	157	5	157	y	ENSMUSG00000026766.17	Mmadhc	chr2	protein_coding	methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria
known_NIR_11389	chr2	50182965	50186264	-	50182910	50186264	A3SS	ENSMUST00000147345.8	known	0.96	103	4	103	4	y	0.96	138	6	138	6	y	0.93	339	25	339	25	y	0.97	157	5	157	5	y	0.96	169	7	169	7	y	0.96	200	9	200	9	y	0.93	226	17	226	17	y	0.91	139	14	139	14	y	0.93	103	8	103	8	y	0.96	204	9	204	9	y	0.98	164	4	164	4	y	0.94	157	10	157	10	y	ENSMUSG00000026766.17	Mmadhc	chr2	protein_coding	methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria
known_NIR_11390	chr2	50186321	50186690	-	50186321	50186655	A5SS	ENSMUST00000147345.8	known	0.00	0	42	0	42	n	0.00	0	47	0	47	n	0.13	16	106	16	106	y	0.03	2	60	2	60	y	0.08	6	71	6	71	y	0.02	2	83	2	83	y	0.10	8	76	8	76	y	0.08	4	49	4	49	y	0.00	0	44	0	44	n	0.01	1	73	1	73	n	0.07	3	43	3	43	y	0.00	0	54	0	54	n	ENSMUSG00000026766.17	Mmadhc	chr2	protein_coding	methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria
known_NIR_11391	chr2	5059527;5067798	5067670;5068718	-	5059527	5068718	cassetteExon	ENSMUST00000114996.8	known	0.11	6.5	55	12;1	55	n	0.12	9.5	68	16;3	68	y	0.03	3.0	99	6;0	99	n	0.11	12.0	102	24;0	102	n	0.14	17.0	103	32;2	103	y	0.10	6.0	53	11;1	53	n	0.12	13.0	93	22;4	93	y	0.07	5.5	71	11;0	71	n	0.19	11.5	50	21;2	50	y	0.20	24.0	98	44;4	98	y	0.12	9.0	68	16;2	68	y	0.08	7.0	76	11;3	76	y	ENSMUSG00000026672.12	Optn	chr2	protein_coding	optineurin
known_NIR_11392	chr2	51838788	51842454	-	51838788;51840102	51839996;51842454	ES	ENSMUST00000028314.9	known	0.10	9	79.0	9	84;74	y	0.13	11	75.5	11	83;68	y	0.08	6	72.0	6	85;59	y	0.12	11	79.5	11	87;72	y	0.05	5	89.5	5	101;78	y	0.15	4	22.0	4	27;17	y	0.07	6	82.0	6	90;74	y	0.06	2	30.0	2	23;37	y	0.16	10	54.0	10	57;51	y	0.10	11	96.5	11	115;78	y	0.15	14	79.0	14	87;71	y	0.08	7	77.5	7	90;65	y	ENSMUSG00000026946.10	Nmi	chr2	protein_coding	N-myc (and STAT) interactor
known_NIR_11393	chr2	51850672	51862921	-	51850672	51862600	A5SS&ES	ENSMUST00000145656.2	known	0.22	15	52	15	52	y	0.29	13	32	13	32	y	0.34	29	56	29	56	y	0.25	17	50	17	50	y	0.21	15	56	15	56	y	0.39	9	14	9	14	y	0.32	21	44	21	44	y	0.32	10	21	10	21	y	0.19	16	67	16	67	y	0.25	18	54	18	54	y	0.18	8	37	8	37	y	0.19	13	54	13	54	y	ENSMUSG00000026946.10	Nmi	chr2	protein_coding	N-myc (and STAT) interactor
known_NIR_11394	chr2	51850672	51862921	-	51850672	51862986	A5SS	ENSMUST00000028314.9	known	0.88	15	2	15	2	y	1.00	13	0	13	0	n	1.00	29	0	29	0	n	1.00	17	0	17	0	n	1.00	15	0	15	0	n	1.00	9	0	9	0	n	0.95	21	1	21	1	n	1.00	10	0	10	0	n	1.00	16	0	16	0	n	1.00	18	0	18	0	n	0.89	8	1	8	1	n	1.00	13	0	13	0	n	ENSMUSG00000026946.10	Nmi	chr2	protein_coding	N-myc (and STAT) interactor
known_NIR_11395	chr2	51850672	51862921	-	51850672;51862639	51862600;51862921	ES	ENSMUST00000145481.8	known	0.28	15	39.5	15	52;27	y	0.34	13	25.5	13	32;19	y	0.41	29	42.5	29	56;29	y	0.31	17	37.5	17	50;25	y	0.26	15	43.5	15	56;31	y	0.46	9	10.5	9	14;7	y	0.40	21	32.0	21	44;20	y	0.36	10	17.5	10	21;14	y	0.24	16	51.5	16	67;36	y	0.30	18	42.0	18	54;30	y	0.23	8	27.5	8	37;18	y	0.25	13	38.0	13	54;22	y	ENSMUSG00000026946.10	Nmi	chr2	protein_coding	N-myc (and STAT) interactor
known_NIR_11396	chr2	51850672	51862986	-	51850672	51862600	A5SS&ES	ENSMUST00000145481.8	known	0.04	2	52	2	52	y	0.00	0	32	0	32	n	0.00	0	56	0	56	n	0.00	0	50	0	50	n	0.00	0	56	0	56	n	0.00	0	14	0	14	n	0.02	1	44	1	44	n	0.00	0	21	0	21	n	0.00	0	67	0	67	n	0.00	0	54	0	54	n	0.03	1	37	1	37	n	0.00	0	54	0	54	n	ENSMUSG00000026946.10	Nmi	chr2	protein_coding	N-myc (and STAT) interactor
known_NIR_11397	chr2	51850672;51862639	51862600;51862986	-	51850672	51862986	cassetteExon	ENSMUST00000028314.9	known	0.93	28.0	2	52;4	2	y	1.00	16.0	0	32;0	0	n	1.00	29.0	0	56;2	0	n	1.00	25.5	0	50;1	0	n	1.00	29.5	0	56;3	0	n	1.00	7.5	0	14;1	0	n	0.96	22.5	1	44;1	1	n	1.00	10.5	0	21;0	0	n	1.00	34.0	0	67;1	0	n	1.00	27.5	0	54;1	0	n	0.95	18.5	1	37;0	1	n	1.00	27.0	0	54;0	0	n	ENSMUSG00000026946.10	Nmi	chr2	protein_coding	N-myc (and STAT) interactor
known_NIR_11398	chr2	51862639	51862986	-	51862639	51862921	A5SS	ENSMUST00000145481.8	known	0.13	4	27	4	27	y	0.00	0	19	0	19	n	0.06	2	29	2	29	y	0.04	1	25	1	25	n	0.09	3	31	3	31	y	0.12	1	7	1	7	n	0.05	1	20	1	20	n	0.00	0	14	0	14	n	0.03	1	36	1	36	n	0.03	1	30	1	30	n	0.00	0	18	0	18	n	0.00	0	22	0	22	n	ENSMUSG00000026946.10	Nmi	chr2	protein_coding	N-myc (and STAT) interactor
known_NIR_11399	chr2	52006406	52006847	+	52006406;52006757	52006680;52006847	ES	ENSMUST00000112693.10	known	0.67	4	2.0	4	2;2	n	0.84	8	1.5	8	1;2	n	0.55	6	5.0	6	2;8	y	0.60	3	2.0	3	2;2	n	0.68	14	6.5	14	5;8	y	0.73	4	1.5	4	1;2	n	0.62	12	7.5	12	7;8	y	0.67	4	2.0	4	2;2	n	0.45	5	6.0	5	4;8	y	0.64	9	5.0	9	2;8	y	0.64	7	4.0	7	5;3	y	0.82	14	3.0	14	2;4	y	ENSMUSG00000036202.17	Rif1	chr2	protein_coding	replication timing regulatory factor 1
known_NIR_11400	chr2	52039709	52040549	-	52039709	52041376	A5SS	ENSMUST00000135200.2	known	1.00	9	0	9	0	n	1.00	14	0	14	0	n	1.00	1	0	1	0	n	1.00	8	0	8	0	n	1.00	4	0	4	0	n	1.00	5	0	5	0	n	0.96	126	5	126	5	y	1.00	3	0	3	0	n	0.89	8	1	8	1	n	1.00	21	0	21	0	n	1.00	10	0	10	0	n	1.00	13	0	13	0	n	ENSMUSG00000026950.19	Neb	chr2	protein_coding	nebulin
known_NIR_11401	chr2	52039709	52040549	-	52039709	52046367	A5SS	ENSMUST00000028320.14	known	1.00	9	0	9	0	n	1.00	14	0	14	0	n	0.50	1	1	1	1	n	1.00	8	0	8	0	n	0.80	4	1	4	1	n	1.00	5	0	5	0	n	0.98	126	2	126	2	y	0.75	3	1	3	1	n	1.00	8	0	8	0	n	1.00	21	0	21	0	n	0.91	10	1	10	1	n	0.93	13	1	13	1	n	ENSMUSG00000026950.19	Neb	chr2	protein_coding	nebulin
known_NIR_11402	chr2	52039709;52041468	52041376;52046367	-	52039709	52046367	cassetteExon	ENSMUST00000028320.14	known	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0.0	1	0;0	1	n	-	-	-	-	-	-	0.00	0.0	1	0;0	1	n	-	-	-	-	-	-	0.69	4.5	2	5;4	2	y	0.33	0.5	1	0;1	1	n	1.00	0.5	0	1;0	0	n	-	-	-	-	-	-	0.00	0.0	1	0;0	1	n	0.00	0.0	1	0;0	1	n	ENSMUSG00000026950.19	Neb	chr2	protein_coding	nebulin
known_NIR_11403	chr2	52039709;52041468	52041376;52049489	-	52039709;52047936	52046367;52049489	MXE	ENSMUST00000028320.14	known	-	-	-	-	-	-	1.00	0.5	0.0	0;1	0;0	n	0.67	1.0	0.5	0;2	1;0	n	-	-	-	-	-	-	0.75	1.5	0.5	0;3	1;0	n	-	-	-	-	-	-	0.14	7.5	45.0	5;10	2;88	y	0.50	0.5	0.5	0;1	1;0	n	0.67	1.0	0.5	1;1	0;1	n	0.50	0.5	0.5	0;1	0;1	n	0.00	0.0	0.5	0;0	1;0	n	0.20	0.5	2.0	0;1	1;3	n	ENSMUSG00000026950.19	Neb	chr2	protein_coding	nebulin
known_NIR_11404	chr2	52039709;52046459	52046367;52047303	-	52039709;52043160	52040549;52047303	MXE	ENSMUST00000036934.12	known	0.00	0.0	4.5	0;0	9;0	n	0.00	0.0	7.0	0;0	14;0	n	0.50	0.5	0.5	1;0	1;0	n	0.00	0.0	4.0	0;0	8;0	n	0.20	0.5	2.0	1;0	4;0	n	0.00	0.0	2.5	0;0	5;0	n	0.23	20.0	66.5	2;38	126;7	y	0.25	0.5	1.5	1;0	3;0	n	0.00	0.0	4.0	0;0	8;0	n	0.00	0.0	10.5	0;0	21;0	n	0.09	0.5	5.0	1;0	10;0	n	0.07	0.5	6.5	1;0	13;0	n	ENSMUSG00000026950.19	Neb	chr2	protein_coding	nebulin
known_NIR_11405	chr2	52041071	52041376	-	52039709	52041376	A3SS	ENSMUST00000135200.2	known	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	n	-	-	-	-	-	-	0.96	110	5	110	5	y	1.00	2	0	2	0	n	0.75	3	1	3	1	n	1.00	1	0	1	0	n	1.00	4	0	4	0	n	1.00	1	0	1	0	n	ENSMUSG00000026950.19	Neb	chr2	protein_coding	nebulin
known_NIR_11406	chr2	52041468	52043068	-	52041468	52049489	A5SS	ENSMUST00000135200.2	known	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.80	40	10	40	10	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000026950.19	Neb	chr2	protein_coding	nebulin
known_NIR_11407	chr2	52041468	52046367	-	52041468	52049489	A5SS	ENSMUST00000135200.2	known	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.29	4	10	4	10	y	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000026950.19	Neb	chr2	protein_coding	nebulin
known_NIR_11408	chr2	52041468;52046459	52046367;52047303	-	52041468;52043160	52043068;52047303	MXE	ENSMUST00000036934.12	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.47	21.0	23.5	4;38	40;7	y	1.00	0.5	0.0	1;0	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026950.19	Neb	chr2	protein_coding	nebulin
known_NIR_11409	chr2	52043160	52047303	-	52046459	52047303	A3SS&ES	ENSMUST00000028320.14	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.16	7	38	7	38	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026950.19	Neb	chr2	protein_coding	nebulin
known_NIR_11410	chr2	52044674	52046367	-	52039709	52046367	A3SS	ENSMUST00000028320.14	known	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.93	25	2	25	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000026950.19	Neb	chr2	protein_coding	nebulin
known_NIR_11411	chr2	52044674	52046367	-	52041468	52046367	A3SS	ENSMUST00000075301.10	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.86	25	4	25	4	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026950.19	Neb	chr2	protein_coding	nebulin
known_NIR_11412	chr2	52047936	52049489	-	52041468	52049489	A3SS	ENSMUST00000135200.2	known	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.90	88	10	88	10	y	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.75	3	1	3	1	n	ENSMUSG00000026950.19	Neb	chr2	protein_coding	nebulin
known_NIR_11413	chr2	52050760	52052080	-	52050760;52051487	52051383;52052080	ES	ENSMUST00000036934.12	known	1.00	12	0.0	12	0;0	n	1.00	13	0.0	13	0;0	n	1.00	4	0.0	4	0;0	n	1.00	13	0.0	13	0;0	n	1.00	18	0.0	18	0;0	n	1.00	7	0.0	7	0;0	n	0.09	9	95.5	9	89;102	y	1.00	2	0.0	2	0;0	n	1.00	11	0.0	11	0;0	n	1.00	22	0.0	22	0;0	n	1.00	6	0.0	6	0;0	n	1.00	17	0.0	17	0;0	n	ENSMUSG00000026950.19	Neb	chr2	protein_coding	nebulin
known_NIR_11414	chr2	52054714	52057572	-	52054714;52055289	52055179;52057572	ES	ENSMUST00000036934.12	known	0.00	0	6.0	0	7;5	n	0.00	0	9.5	0	8;11	n	0.50	1	1.0	1	2;0	n	0.26	3	8.5	3	6;11	y	0.00	0	7.0	0	4;10	n	0.00	0	5.5	0	4;7	n	0.01	1	102.0	1	118;86	n	0.08	1	11.0	1	19;3	n	0.00	0	12.5	0	18;7	n	0.08	1	11.5	1	18;5	n	0.00	0	5.0	0	6;4	n	0.05	1	18.0	1	22;14	n	ENSMUSG00000026950.19	Neb	chr2	protein_coding	nebulin
known_NIR_11415	chr2	52073848;52075387	52075283;52077423	-	52073848;52076128	52076024;52077423	MXE	ENSMUST00000036934.12	known	0.78	7.0	2.0	11;3	2;2	y	0.69	4.5	2.0	3;6	4;0	n	0.00	0.0	0.5	0;0	1;0	n	0.89	8.5	1.0	9;8	0;2	n	0.93	7.0	0.5	10;4	0;1	n	0.86	3.0	0.5	3;3	0;1	n	0.99	85.0	0.5	93;77	1;0	n	1.00	2.5	0.0	2;3	0;0	n	0.91	10.0	1.0	10;10	0;2	n	0.84	10.5	2.0	9;12	2;2	y	1.00	4.0	0.0	1;7	0;0	n	0.93	6.5	0.5	6;7	1;0	n	ENSMUSG00000026950.19	Neb	chr2	protein_coding	nebulin
known_NIR_11416	chr2	52274763;52275297	52275282;52276426	+	52274763	52276426	cassetteExon	ENSMUST00000209682.2	known	0.21	6.0	22	8;4	22	y	0.14	3.0	18	3;3	18	y	0.45	2.5	3	2;3	3	n	0.33	5.5	11	6;5	11	y	0.51	9.5	9	9;10	9	y	0.29	2.0	5	2;2	5	n	0.30	6.0	14	5;7	14	y	0.25	2.0	6	3;1	6	n	0.33	8.5	17	9;8	17	y	0.42	19.5	27	21;18	27	y	0.25	4.0	12	3;5	12	y	0.25	14.0	42	13;15	42	y	ENSMUSG00000086447.3	Gm13522	chr2	lncRNA	predicted gene 13522
known_NIR_11417	chr2	52277627	52280124	+	52277627;52279835	52279740;52280124	ES	ENSMUST00000209682.2	known	0.80	4	1.0	4	0;2	n	0.83	5	1.0	5	0;2	n	-	-	-	-	-	-	0.60	3	2.0	3	1;3	n	0.44	2	2.5	2	3;2	n	-	-	-	-	-	-	0.50	3	3.0	3	0;6	n	-	-	-	-	-	-	0.67	1	0.5	1	0;1	n	0.42	5	7.0	5	2;12	y	0.89	4	0.5	4	0;1	n	0.75	12	4.0	12	3;5	y	ENSMUSG00000086447.3	Gm13522	chr2	lncRNA	predicted gene 13522
known_NIR_11418	chr2	53016988;53020470	53020424;53021852	+	53016988	53021852	cassetteExon	ENSMUST00000090952.11	known	0.82	4.5	1	6;3	1	n	1.00	5.0	0	6;4	0	n	0.55	12.0	10	22;2	10	y	1.00	6.5	0	5;8	0	n	0.50	10.0	10	14;6	10	y	0.73	5.5	2	7;4	2	y	0.64	9.0	5	10;8	5	y	0.92	11.5	1	12;11	1	n	1.00	3.5	0	5;2	0	n	0.78	3.5	1	3;4	1	n	0.82	4.5	1	5;4	1	n	0.89	8.5	1	7;10	1	n	ENSMUSG00000036053.18	Fmnl2	chr2	protein_coding	formin-like 2
known_NIR_11419	chr2	53016988;53020517	53020424;53021852	+	53016988	53021852	cassetteExon	ENSMUST00000090952.11	known	0.75	3.0	1	6;0	1	n	1.00	4.0	0	6;2	0	n	0.60	15.0	10	22;8	10	y	1.00	3.0	0	5;1	0	n	0.49	9.5	10	14;5	10	y	0.71	5.0	2	7;3	2	y	0.62	8.0	5	10;6	5	y	0.88	7.0	1	12;2	1	n	1.00	3.5	0	5;2	0	n	0.67	2.0	1	3;1	1	n	0.75	3.0	1	5;1	1	n	0.82	4.5	1	7;2	1	n	ENSMUSG00000036053.18	Fmnl2	chr2	protein_coding	formin-like 2
known_NIR_11420	chr2	53020470	53021852	+	53020517	53021852	A5SS	ENSMUST00000127122.9	known	1.00	3	0	3	0	n	0.67	4	2	4	2	n	0.20	2	8	2	8	y	0.89	8	1	8	1	n	0.55	6	5	6	5	y	0.57	4	3	4	3	n	0.57	8	6	8	6	y	0.85	11	2	11	2	y	0.50	2	2	2	2	n	0.80	4	1	4	1	n	0.80	4	1	4	1	n	0.83	10	2	10	2	y	ENSMUSG00000036053.18	Fmnl2	chr2	protein_coding	formin-like 2
known_NIR_11421	chr2	53034891	53035298	-	53034891	53035245	A5SS	ENSMUST00000076313.14	known	0.00	0	67	0	67	n	0.00	0	43	0	43	n	0.02	3	141	3	141	y	0.01	1	96	1	96	n	0.00	0	110	0	110	n	0.00	0	49	0	49	n	0.00	0	73	0	73	n	0.00	0	61	0	61	n	0.00	0	69	0	69	n	0.00	0	92	0	92	n	0.00	0	70	0	70	n	0.00	0	110	0	110	n	ENSMUSG00000061136.17	Prpf40a	chr2	protein_coding	pre-mRNA processing factor 40A
known_NIR_11422	chr2	53065044;53065247	53065156;53066398	-	53065044	53066398	cassetteExon	ENSMUST00000076313.14	known	0.00	0.0	25	0;0	25	n	0.00	0.0	17	0;0	17	n	0.00	0.0	55	0;0	55	n	0.00	0.0	37	0;0	37	n	0.02	1.0	59	2;0	59	n	0.00	0.0	25	0;0	25	n	0.00	0.0	33	0;0	33	n	0.00	0.0	41	0;0	41	n	0.00	0.0	38	0;0	38	n	0.01	0.5	49	1;0	49	n	0.00	0.0	28	0;0	28	n	0.04	2.5	56	3;2	56	y	ENSMUSG00000061136.17	Prpf40a	chr2	protein_coding	pre-mRNA processing factor 40A
known_NIR_11423	chr2	53067445;53078539	53078460;53079981	-	53067445	53079981	cassetteExon	ENSMUST00000076313.14	known	0.08	2.5	28	2;3	28	y	0.00	0.0	16	0;0	16	n	0.07	3.0	41	5;1	41	n	0.03	1.0	36	1;1	36	n	0.06	4.5	67	6;3	67	y	0.10	2.5	22	4;1	22	n	0.10	3.0	28	4;2	28	y	0.05	1.5	28	1;2	28	n	0.06	1.5	25	3;0	25	n	0.05	2.0	37	2;2	37	y	0.06	1.5	25	2;1	25	n	0.01	0.5	35	1;0	35	n	ENSMUSG00000061136.17	Prpf40a	chr2	protein_coding	pre-mRNA processing factor 40A
known_NIR_11424	chr2	53080112	53081161	-	53080112	53081035	A5SS	ENSMUST00000076313.14	known	0.35	7	13	7	13	y	0.56	9	7	9	7	y	0.42	19	26	19	26	y	0.36	12	21	12	21	y	0.48	28	30	28	30	y	0.60	21	14	21	14	y	0.26	6	17	6	17	y	0.29	9	22	9	22	y	0.38	8	13	8	13	y	0.44	11	14	11	14	y	0.48	16	17	16	17	y	0.34	10	19	10	19	y	ENSMUSG00000061136.17	Prpf40a	chr2	protein_coding	pre-mRNA processing factor 40A
known_NIR_11425	chr2	53082534	53084296	+	53081892	53084296	A5SS	ENSMUST00000155517.2	known	0.68	23	11	23	11	y	1.00	17	0	17	0	n	0.95	41	2	41	2	y	0.78	18	5	18	5	y	0.74	32	11	32	11	y	0.94	15	1	15	1	n	0.87	26	4	26	4	y	0.79	22	6	22	6	y	0.88	15	2	15	2	y	0.79	27	7	27	7	y	0.90	18	2	18	2	y	1.00	30	0	30	0	n	ENSMUSG00000026960.7	Arl6ip6	chr2	protein_coding	ADP-ribosylation factor-like 6 interacting protein 6
known_NIR_11426	chr2	5570591	5680725	-	5570591	5718957	A5SS	ENSMUST00000044009.14	known	0.90	9	1	9	1	n	0.75	3	1	3	1	n	1.00	2	0	2	0	n	0.91	10	1	10	1	n	0.64	7	4	7	4	y	1.00	6	0	6	0	n	1.00	11	0	11	0	n	0.94	16	1	16	1	n	1.00	10	0	10	0	n	1.00	13	0	13	0	n	0.75	3	1	3	1	n	0.94	15	1	15	1	n	ENSMUSG00000039145.17	Camk1d	chr2	protein_coding	calcium/calmodulin-dependent protein kinase ID
known_NIR_11427	chr2	5570591	5681043	-	5570591	5680725	5pMXE	ENSMUST00000114987.4	known	0.31	4	9	4	9	y	0.25	1	3	1	3	n	0.50	2	2	2	2	n	0.23	3	10	3	10	y	0.36	4	7	4	7	y	0.54	7	6	7	6	y	0.35	6	11	6	11	y	0.41	11	16	11	16	y	0.47	9	10	9	10	y	0.54	15	13	15	13	y	0.57	4	3	4	3	n	0.40	10	15	10	15	y	ENSMUSG00000039145.17	Camk1d	chr2	protein_coding	calcium/calmodulin-dependent protein kinase ID
known_NIR_11428	chr2	5814829	5815607	-	5812317	5815607	A3SS	ENSMUST00000043864.9	known	0.07	11	148	11	148	y	0.06	10	152	10	152	y	0.32	92	193	92	193	y	0.04	7	165	7	165	y	0.23	55	188	55	188	y	0.41	57	83	57	83	y	0.14	28	178	28	178	y	0.21	31	119	31	119	y	0.06	8	136	8	136	y	0.06	14	209	14	209	y	0.09	14	141	14	141	y	0.08	18	197	18	197	y	ENSMUSG00000039128.14	Cdc123	chr2	protein_coding	cell division cycle 123
known_NIR_11429	chr2	58390569	58397289	-	58390569	58427790	A5SS	ENSMUST00000056376.12	known	0.15	3	17	3	17	y	0.12	1	7	1	7	n	0.06	1	17	1	17	n	0.06	1	16	1	16	n	0.09	3	32	3	32	y	0.00	0	9	0	9	n	0.07	1	13	1	13	n	0.06	1	17	1	17	n	0.00	0	12	0	12	n	0.04	1	27	1	27	n	0.00	0	11	0	11	n	0.12	2	15	2	15	y	ENSMUSG00000026836.16	Acvr1	chr2	protein_coding	activin A receptor, type 1
known_NIR_11430	chr2	58390569	58427790	-	58390569	58406036	5pMXE	ENSMUST00000145495.8	known	0.85	17	3	17	3	y	0.78	7	2	7	2	n	0.89	17	2	17	2	y	0.64	16	9	16	9	y	0.86	32	5	32	5	y	0.60	9	6	9	6	y	0.72	13	5	13	5	y	0.89	17	2	17	2	y	0.67	12	6	12	6	y	0.93	27	2	27	2	y	0.79	11	3	11	3	y	0.68	15	7	15	7	y	ENSMUSG00000026836.16	Acvr1	chr2	protein_coding	activin A receptor, type 1
known_NIR_11431	chr2	58390569	58427790	-	58390569;58406312	58406036;58427790	ES	ENSMUST00000112601.9	known	0.89	17	2.0	17	3;1	n	0.88	7	1.0	7	2;0	n	0.85	17	3.0	17	2;4	y	0.74	16	5.5	16	9;2	y	0.90	32	3.5	32	5;2	y	0.67	9	4.5	9	6;3	y	0.76	13	4.0	13	5;3	y	0.83	17	3.5	17	2;5	y	0.69	12	5.5	12	6;5	y	0.89	27	3.5	27	2;5	y	0.79	11	3.0	11	3;3	y	0.79	15	4.0	15	7;1	n	ENSMUSG00000026836.16	Acvr1	chr2	protein_coding	activin A receptor, type 1
known_NIR_11432	chr2	5850196	5859627	+	5853001	5859627	5pMXE	ENSMUST00000128604.2	known	0.92	35	3	35	3	y	0.88	22	3	22	3	y	0.86	96	15	96	15	y	0.84	46	9	46	9	y	0.91	42	4	42	4	y	1.00	65	0	65	0	n	0.96	49	2	49	2	y	0.84	37	7	37	7	y	0.86	32	5	32	5	y	0.92	44	4	44	4	y	0.90	35	4	35	4	y	0.87	40	6	40	6	y	ENSMUSG00000025817.13	Nudt5	chr2	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 5
known_NIR_11433	chr2	5850196;5853001	5852919;5859627	+	5850196	5859627	cassetteExon	ENSMUST00000026927.10	known	0.05	2.0	35	1;3	35	n	0.08	2.0	22	1;3	22	n	0.07	7.5	96	0;15	96	n	0.11	5.5	46	2;9	46	y	0.06	2.5	42	1;4	42	n	0.01	0.5	65	1;0	65	n	0.04	2.0	49	2;2	49	y	0.13	5.5	37	4;7	37	y	0.07	2.5	32	0;5	32	n	0.06	3.0	44	2;4	44	y	0.05	2.0	35	0;4	35	n	0.13	6.0	40	6;6	40	y	ENSMUSG00000025817.13	Nudt5	chr2	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 5
known_NIR_11434	chr2	58645434;58649943	58649795;58653687	+	58645434	58653687	cassetteExon	ENSMUST00000071543.12	known	0.03	18.0	588	11;25	588	y	0.03	10.0	332	7;13	332	y	0.07	0.5	7	1;0	7	n	0.03	22.5	714	14;31	714	y	0.01	1.0	113	2;0	113	n	0.00	0.0	10	0;0	10	n	0.01	2.0	235	4;0	235	n	0.00	0.0	11	0;0	11	n	0.03	21.0	636	14;28	636	y	0.03	22.5	825	9;36	825	y	0.03	14.0	511	6;22	511	y	0.03	39.0	1265	11;67	1265	y	ENSMUSG00000026839.18	Upp2	chr2	protein_coding	uridine phosphorylase 2
known_NIR_11435	chr2	58670160	58676580	+	58670160	58681790	A3SS	ENSMUST00000071543.12	known	0.77	20	6	20	6	y	1.00	8	0	8	0	n	-	-	-	-	-	-	0.48	10	11	10	11	y	0.67	2	1	2	1	n	-	-	-	-	-	-	0.88	7	1	7	1	n	-	-	-	-	-	-	0.21	6	22	6	22	y	0.38	8	13	8	13	y	0.53	10	9	10	9	y	0.35	15	28	15	28	y	ENSMUSG00000026839.18	Upp2	chr2	protein_coding	uridine phosphorylase 2
known_NIR_11436	chr2	58670160	58680041	+	58670160	58681790	A3SS	ENSMUST00000071543.12	known	0.99	832	6	832	6	y	1.00	546	0	546	0	n	1.00	6	0	6	0	n	0.99	843	11	843	11	y	0.99	139	1	139	1	n	1.00	8	0	8	0	n	1.00	359	1	359	1	n	1.00	10	0	10	0	n	0.98	1040	22	1040	22	y	0.99	1190	13	1190	13	y	0.99	974	9	974	9	y	0.98	1764	28	1764	28	y	ENSMUSG00000026839.18	Upp2	chr2	protein_coding	uridine phosphorylase 2
known_NIR_11437	chr2	58670160;58676691	58676580;58680041	+	58670160	58680041	cassetteExon	ENSMUST00000059102.13	known	0.01	11.5	832	20;3	832	y	0.01	5.0	546	8;2	546	y	0.00	0.0	6	0;0	6	n	0.01	6.5	843	10;3	843	y	0.01	1.0	139	2;0	139	n	0.00	0.0	8	0;0	8	n	0.01	4.5	359	7;2	359	y	0.00	0.0	10	0;0	10	n	0.00	4.5	1040	6;3	1040	y	0.00	5.0	1190	8;2	1190	y	0.01	8.0	974	10;6	974	y	0.01	10.0	1764	15;5	1764	y	ENSMUSG00000026839.18	Upp2	chr2	protein_coding	uridine phosphorylase 2
known_NIR_11438	chr2	5879229	5881171	-	5879229	5881175	A5SS	ENSMUST00000102981.10	known	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.09	2	21	2	21	y	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.20	1	4	1	4	n	0.00	0	5	0	5	n	0.25	2	6	2	6	n	0.00	0	6	0	6	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.29	2	5	2	5	n	ENSMUSG00000025816.16	Sec61a2	chr2	protein_coding	Sec61, alpha subunit 2 (S. cerevisiae)
known_NIR_11439	chr2	5881812	5882499	-	5881812	5882666	A5SS	ENSMUST00000102981.10	known	-	-	-	-	-	-	0.17	1	5	1	5	n	0.15	4	22	4	22	y	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.33	2	4	2	4	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.33	1	2	1	2	n	0.25	1	3	1	3	n	ENSMUSG00000025816.16	Sec61a2	chr2	protein_coding	Sec61, alpha subunit 2 (S. cerevisiae)
known_NIR_11440	chr2	58992341	59045022	+	58991472	59045022	A5SS	ENSMUST00000168631.8	known	0.02	1	41	1	41	n	0.00	0	23	0	23	n	0.00	0	19	0	19	n	0.02	1	60	1	60	n	0.02	1	41	1	41	n	0.00	0	9	0	9	n	0.06	2	31	2	31	y	0.13	2	13	2	13	y	0.07	2	28	2	28	y	0.01	1	69	1	69	n	0.00	0	52	0	52	n	0.00	0	40	0	40	n	ENSMUSG00000026991.21	Pkp4	chr2	protein_coding	plakophilin 4
known_NIR_11441	chr2	59045158	59045278	+	59045158	59096732	A3SS	ENSMUST00000168631.8	known	0.12	4	30	4	30	y	0.13	4	27	4	27	y	0.00	0	35	0	35	n	0.11	8	64	8	64	y	0.12	8	58	8	58	y	0.12	2	15	2	15	y	0.11	6	51	6	51	y	0.03	1	30	1	30	n	0.11	5	40	5	40	y	0.09	7	70	7	70	y	0.13	8	53	8	53	y	0.13	11	71	11	71	y	ENSMUSG00000026991.21	Pkp4	chr2	protein_coding	plakophilin 4
known_NIR_11442	chr2	59045158	59045278	+	59045158	59119562	A3SS	ENSMUST00000184332.8	known	0.36	4	7	4	7	y	0.67	4	2	4	2	n	0.00	0	5	0	5	n	0.36	8	14	8	14	y	0.57	8	6	8	6	y	0.40	2	3	2	3	n	0.60	6	4	6	4	y	0.25	1	3	1	3	n	0.45	5	6	5	6	y	0.37	7	12	7	12	y	0.57	8	6	8	6	y	0.50	11	11	11	11	y	ENSMUSG00000026991.21	Pkp4	chr2	protein_coding	plakophilin 4
known_NIR_11443	chr2	59045158	59119562	+	59045158;59096844	59096732;59119562	ES	ENSMUST00000168631.8	known	0.19	7	30.5	7	30;31	y	0.07	2	27.5	2	27;28	y	0.14	5	32.0	5	35;29	y	0.19	14	61.0	14	64;58	y	0.10	6	56.5	6	58;55	y	0.15	3	17.5	3	15;20	y	0.07	4	52.5	4	51;54	y	0.10	3	28.0	3	30;26	y	0.12	6	43.5	6	40;47	y	0.15	12	69.5	12	70;69	y	0.11	6	48.5	6	53;44	y	0.13	11	73.5	11	71;76	y	ENSMUSG00000026991.21	Pkp4	chr2	protein_coding	plakophilin 4
known_NIR_11444	chr2	59045158;59119596	59119562;59135410	+	59045158;59096844	59096732;59135410	MXE	ENSMUST00000183625.8	known	0.59	23.5	16.0	7;40	30;2	y	0.53	15.5	13.5	2;29	27;0	n	0.51	20.0	19.0	5;35	35;3	y	0.52	35.0	32.5	14;56	64;1	n	0.49	31.5	32.5	6;57	58;7	y	0.54	10.0	8.5	3;17	15;2	y	0.52	31.5	29.0	4;59	51;7	y	0.48	14.5	15.5	3;26	30;1	n	0.58	28.5	21.0	6;51	40;2	y	0.55	46.0	37.0	12;80	70;4	y	0.52	30.0	28.0	6;54	53;3	y	0.57	52.0	39.5	11;93	71;8	y	ENSMUSG00000026991.21	Pkp4	chr2	protein_coding	plakophilin 4
known_NIR_11445	chr2	59060198	59096732	+	59045158	59096732	A5SS	ENSMUST00000168631.8	known	0.14	5	30	5	30	y	0.10	3	27	3	27	y	0.00	0	35	0	35	n	0.04	3	64	3	64	y	0.05	3	58	3	58	y	0.12	2	15	2	15	y	0.00	0	51	0	51	n	0.00	0	30	0	30	n	0.07	3	40	3	40	y	0.07	5	70	5	70	y	0.04	2	53	2	53	y	0.05	4	71	4	71	y	ENSMUSG00000026991.21	Pkp4	chr2	protein_coding	plakophilin 4
known_NIR_11446	chr2	59096844	59135410	+	59096844;59119596	59119562;59135410	ES	ENSMUST00000168631.8	known	0.05	2	35.5	2	31;40	y	0.00	0	28.5	0	28;29	n	0.09	3	32.0	3	29;35	y	0.02	1	57.0	1	58;56	n	0.11	7	56.0	7	55;57	y	0.10	2	18.5	2	20;17	y	0.11	7	56.5	7	54;59	y	0.04	1	26.0	1	26;26	n	0.04	2	49.0	2	47;51	y	0.05	4	74.5	4	69;80	y	0.06	3	49.0	3	44;54	y	0.09	8	84.5	8	76;93	y	ENSMUSG00000026991.21	Pkp4	chr2	protein_coding	plakophilin 4
known_NIR_11447	chr2	59135836	59138429	+	59135836	59138352	A3SS	ENSMUST00000168631.8	known	0.11	7	55	7	55	y	0.25	9	27	9	27	y	0.08	4	49	4	49	y	0.20	16	65	16	65	y	0.22	24	87	24	87	y	0.14	4	24	4	24	y	0.15	9	53	9	53	y	0.24	8	25	8	25	y	0.24	12	38	12	38	y	0.19	22	96	22	96	y	0.24	16	50	16	50	y	0.19	15	65	15	65	y	ENSMUSG00000026991.21	Pkp4	chr2	protein_coding	plakophilin 4
known_NIR_11448	chr2	59135836	59138434	+	59135836	59138352	A3SS	ENSMUST00000168631.8	known	0.00	0	55	0	55	n	0.18	6	27	6	27	y	0.00	0	49	0	49	n	0.07	5	65	5	65	y	0.11	11	87	11	87	y	0.00	0	24	0	24	n	0.05	3	53	3	53	y	0.07	2	25	2	25	y	0.10	4	38	4	38	y	0.07	7	96	7	96	y	0.07	4	50	4	50	y	0.11	8	65	8	65	y	ENSMUSG00000026991.21	Pkp4	chr2	protein_coding	plakophilin 4
known_NIR_11449	chr2	59135836	59138434	+	59135836	59138429	A3SS	ENSMUST00000183359.8	known	0.00	0	7	0	7	n	0.40	6	9	6	9	y	0.00	0	4	0	4	n	0.24	5	16	5	16	y	0.31	11	24	11	24	y	0.00	0	4	0	4	n	0.25	3	9	3	9	y	0.20	2	8	2	8	y	0.25	4	12	4	12	y	0.24	7	22	7	22	y	0.20	4	16	4	16	y	0.35	8	15	8	15	y	ENSMUSG00000026991.21	Pkp4	chr2	protein_coding	plakophilin 4
known_NIR_11450	chr2	59140634	59142041	+	59140634	59142038	A3SS	ENSMUST00000168631.8	known	0.07	4	53	4	53	y	0.12	6	46	6	46	y	0.06	3	45	3	45	y	0.13	12	79	12	79	y	0.09	9	86	9	86	y	0.00	0	19	0	19	n	0.16	12	65	12	65	y	0.07	3	38	3	38	y	0.15	11	64	11	64	y	0.13	14	96	14	96	y	0.07	6	78	6	78	y	0.18	20	92	20	92	y	ENSMUSG00000026991.21	Pkp4	chr2	protein_coding	plakophilin 4
known_NIR_11451	chr2	59142257;59144747	59144700;59148856	+	59142257	59148856	cassetteExon	ENSMUST00000168631.8	known	0.35	11.5	21	13;10	21	y	0.24	14.5	46	16;13	46	y	0.18	9.5	43	9;10	43	y	0.22	16.5	60	15;18	60	y	0.16	11.5	62	3;20	62	y	0.20	5.5	22	3;8	22	y	0.18	11.0	50	9;13	50	y	0.13	3.5	24	3;4	24	y	0.40	24.5	37	21;28	37	y	0.19	21.0	88	18;24	88	y	0.24	17.0	54	14;20	54	y	0.24	17.0	53	17;17	53	y	ENSMUSG00000026991.21	Pkp4	chr2	protein_coding	plakophilin 4
known_NIR_11452	chr2	59153040	59165092	+	59153059	59165092	A5SS	ENSMUST00000168631.8	known	0.00	0	75	0	75	n	0.00	0	67	0	67	n	0.00	0	45	0	45	n	0.00	0	110	0	110	n	0.02	2	108	2	108	y	0.00	0	28	0	28	n	0.00	0	100	0	100	n	0.00	0	20	0	20	n	0.00	0	70	0	70	n	0.02	2	119	2	119	y	0.00	0	79	0	79	n	0.02	2	123	2	123	y	ENSMUSG00000026991.21	Pkp4	chr2	protein_coding	plakophilin 4
known_NIR_11453	chr2	59178385;59180966	59180838;59182606	+	59178385	59182606	cassetteExon	ENSMUST00000168631.8	known	0.24	36.0	117	36;36	117	y	0.21	34.5	126	34;35	126	y	0.23	18.5	61	23;14	61	y	0.20	26.5	109	22;31	109	y	0.29	39.5	98	37;42	98	y	0.33	12.5	25	14;11	25	y	0.21	35.0	135	27;43	135	y	0.26	11.5	32	10;13	32	y	0.25	30.0	92	29;31	92	y	0.15	31.0	171	27;35	171	y	0.19	33.5	144	32;35	144	y	0.16	29.5	154	29;30	154	y	ENSMUSG00000026991.21	Pkp4	chr2	protein_coding	plakophilin 4
known_NIR_11454	chr2	5928949	5929489	-	5928949	5934449	A5SS	ENSMUST00000095147.9	known	0.80	20	5	20	5	y	0.84	21	4	21	4	y	0.50	4	4	4	4	n	0.75	33	11	33	11	y	0.86	36	6	36	6	y	0.43	10	13	10	13	y	0.68	28	13	28	13	y	0.78	14	4	14	4	y	0.77	34	10	34	10	y	0.57	27	20	27	20	y	0.68	23	11	23	11	y	0.73	41	15	41	15	y	ENSMUSG00000025815.14	Dhtkd1	chr2	protein_coding	dehydrogenase E1 and transketolase domain containing 1
known_NIR_11455	chr2	5930078	5934449	-	5928949	5934449	A3SS	ENSMUST00000095147.9	known	0.44	4	5	4	5	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.13	2	13	2	13	y	0.28	5	13	5	13	y	0.00	0	4	0	4	n	0.09	1	10	1	10	n	0.26	7	20	7	20	y	0.08	1	11	1	11	n	0.17	3	15	3	15	y	ENSMUSG00000025815.14	Dhtkd1	chr2	protein_coding	dehydrogenase E1 and transketolase domain containing 1
known_NIR_11456	chr2	59621242	59621943	+	59621221	59621943	A5SS	ENSMUST00000112568.8	known	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.58	7	5	7	5	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	1.00	1	0	1	0	n	0.75	6	2	6	2	n	0.50	1	1	1	1	n	0.33	2	4	2	4	n	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000035168.17	Tanc1	chr2	protein_coding	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
known_NIR_11457	chr2	59692084	59692964	-	59692081	59692964	A3SS	ENSMUST00000028368.14	known	0.46	6	7	6	7	y	0.85	11	2	11	2	y	0.61	11	7	11	7	y	0.57	4	3	4	3	n	0.67	8	4	8	4	y	0.75	6	2	6	2	n	0.79	19	5	19	5	y	0.83	5	1	5	1	n	0.69	9	4	9	4	y	0.72	18	7	18	7	y	0.65	11	6	11	6	y	0.72	23	9	23	9	y	ENSMUSG00000026988.16	Wdsub1	chr2	protein_coding	WD repeat, SAM and U-box domain containing 1
known_NIR_11458	chr2	59737395	59737888	-	59737395	59737783	A5SS	ENSMUST00000112550.8	known	0.53	8	7	8	7	y	0.85	11	2	11	2	y	0.36	5	9	5	9	y	0.67	6	3	6	3	n	0.67	6	3	6	3	n	0.50	6	6	6	6	y	0.45	5	6	5	6	y	0.29	2	5	2	5	n	0.40	4	6	4	6	y	0.25	2	6	2	6	n	0.47	7	8	7	8	y	0.83	10	2	10	2	y	ENSMUSG00000026987.17	Baz2b	chr2	protein_coding	bromodomain adjacent to zinc finger domain, 2B
known_NIR_11459	chr2	59762514;59763782	59763756;59764015	-	59762514	59764015	cassetteExon	ENSMUST00000112550.8	known	0.00	0.0	5	0;0	5	n	0.00	0.0	3	0;0	3	n	0.00	0.0	6	0;0	6	n	0.43	3.0	4	2;4	4	y	0.50	4.0	4	5;3	4	y	0.11	1.0	8	1;1	8	n	0.11	0.5	4	0;1	4	n	0.17	1.0	5	0;2	5	n	0.33	2.0	4	2;2	4	n	0.14	1.0	6	1;1	6	n	0.33	2.0	4	2;2	4	n	0.65	5.5	3	5;6	3	y	ENSMUSG00000026987.17	Baz2b	chr2	protein_coding	bromodomain adjacent to zinc finger domain, 2B
known_NIR_11460	chr2	59809051;59814314	59814126;59831850	-	59809051	59831850	cassetteExon	ENSMUST00000112550.8	known	0.43	3.0	4	1;5	4	n	1.00	1.0	0	1;1	0	n	0.56	2.5	2	4;1	2	n	-	-	-	-	-	-	0.33	2.5	5	2;3	5	y	0.56	2.5	2	1;4	2	n	1.00	2.5	0	2;3	0	n	0.27	1.5	4	1;2	4	n	1.00	0.5	0	1;0	0	n	0.50	1.0	1	1;1	1	n	1.00	2.5	0	0;5	0	n	0.25	1.0	3	1;1	3	n	ENSMUSG00000026987.17	Baz2b	chr2	protein_coding	bromodomain adjacent to zinc finger domain, 2B
known_NIR_11461	chr2	60037307	60039366	-	60037307	60040057	A5SS	ENSMUST00000151756.2	known	0.33	2	4	2	4	n	0.43	3	4	3	4	n	0.00	0	2	0	2	n	0.21	3	11	3	11	y	0.17	2	10	2	10	y	0.33	1	2	1	2	n	0.38	6	10	6	10	y	0.00	0	2	0	2	n	0.31	5	11	5	11	y	0.29	4	10	4	10	y	0.22	4	14	4	14	y	0.36	4	7	4	7	y	ENSMUSG00000026987.17	Baz2b	chr2	protein_coding	bromodomain adjacent to zinc finger domain, 2B
known_NIR_11462	chr2	60040428	60059262	+	60055214	60059262	5pMXE	ENSMUST00000067542.15	known	1.00	12	0	12	0	n	1.00	4	0	4	0	n	0.91	21	2	21	2	y	1.00	11	0	11	0	n	0.89	16	2	16	2	y	0.88	7	1	7	1	n	0.71	12	5	12	5	y	0.92	11	1	11	1	n	0.77	10	3	10	3	y	0.62	10	6	10	6	y	1.00	10	0	10	0	n	0.92	11	1	11	1	n	ENSMUSG00000026977.18	Marchf7	chr2	protein_coding	membrane associated ring-CH-type finger 7
known_NIR_11463	chr2	60040428;60055214	60055114;60059262	+	60040428	60059262	cassetteExon	ENSMUST00000102748.11	known	0.00	0.0	12	0;0	12	n	0.27	1.5	4	3;0	4	n	0.11	2.5	21	3;2	21	y	0.04	0.5	11	1;0	11	n	0.11	2.0	16	2;2	16	y	0.18	1.5	7	2;1	7	n	0.17	2.5	12	0;5	12	n	0.15	2.0	11	3;1	11	n	0.13	1.5	10	0;3	10	n	0.31	4.5	10	3;6	10	y	0.05	0.5	10	1;0	10	n	0.12	1.5	11	2;1	11	n	ENSMUSG00000026977.18	Marchf7	chr2	protein_coding	membrane associated ring-CH-type finger 7
known_NIR_11464	chr2	60062711	60064278	+	60062711	60064243	A3SS	ENSMUST00000102748.11	known	0.00	0	19	0	19	n	0.24	4	13	4	13	y	0.13	4	26	4	26	y	0.12	4	29	4	29	y	0.07	2	28	2	28	y	0.12	3	22	3	22	y	0.06	2	31	2	31	y	0.00	0	25	0	25	n	0.00	0	30	0	30	n	0.15	5	29	5	29	y	0.00	0	24	0	24	n	0.12	3	22	3	22	y	ENSMUSG00000026977.18	Marchf7	chr2	protein_coding	membrane associated ring-CH-type finger 7
known_NIR_11465	chr2	60071419	60073901	+	60071396	60073901	A5SS	ENSMUST00000102748.11	known	0.03	2	58	2	58	y	0.13	3	20	3	20	y	0.00	0	70	0	70	n	0.00	0	27	0	27	n	0.09	5	48	5	48	y	0.04	1	27	1	27	n	0.02	1	41	1	41	n	0.00	0	32	0	32	n	0.03	1	38	1	38	n	0.00	0	34	0	34	n	0.00	0	31	0	31	n	0.07	3	39	3	39	y	ENSMUSG00000026977.18	Marchf7	chr2	protein_coding	membrane associated ring-CH-type finger 7
known_NIR_11466	chr2	60074014	60078234	+	60074014	60075556	A3SS	ENSMUST00000126986.2	known	0.23	9	31	9	31	y	0.09	2	21	2	21	y	0.09	6	62	6	62	y	0.05	2	37	2	37	y	0.11	6	48	6	48	y	0.06	2	30	2	30	y	0.09	4	43	4	43	y	0.10	3	26	3	26	y	0.02	1	44	1	44	n	0.17	7	33	7	33	y	0.03	1	31	1	31	n	0.09	4	41	4	41	y	ENSMUSG00000026977.18	Marchf7	chr2	protein_coding	membrane associated ring-CH-type finger 7
known_NIR_11467	chr2	60074014	60078234	+	60074014;60075604	60075556;60078234	ES	ENSMUST00000102748.11	known	0.23	9	30.5	9	31;30	y	0.11	2	15.5	2	21;10	y	0.10	6	52.0	6	62;42	y	0.05	2	38.0	2	37;39	y	0.12	6	42.0	6	48;36	y	0.06	2	29.0	2	30;28	y	0.10	4	35.0	4	43;27	y	0.13	3	20.5	3	26;15	y	0.03	1	32.0	1	44;20	n	0.22	7	25.0	7	33;17	y	0.03	1	28.0	1	31;25	n	0.10	4	37.0	4	41;33	y	ENSMUSG00000026977.18	Marchf7	chr2	protein_coding	membrane associated ring-CH-type finger 7
known_NIR_11468	chr2	60075604	60078234	+	60077856	60078234	5pMXE	ENSMUST00000136367.2	known	0.91	30	3	30	3	y	0.71	10	4	10	4	y	0.95	42	2	42	2	y	0.95	39	2	39	2	y	0.90	36	4	36	4	y	0.93	28	2	28	2	y	0.73	27	10	27	10	y	0.94	15	1	15	1	n	0.87	20	3	20	3	y	0.94	17	1	17	1	n	0.93	25	2	25	2	y	0.79	33	9	33	9	y	ENSMUSG00000026977.18	Marchf7	chr2	protein_coding	membrane associated ring-CH-type finger 7
known_NIR_11469	chr2	60075604;60077856	60077832;60078234	+	60075604	60078234	cassetteExon	ENSMUST00000102748.11	known	0.08	2.5	30	2;3	30	y	0.17	2.0	10	0;4	10	n	0.05	2.0	42	2;2	42	y	0.03	1.0	39	0;2	39	n	0.06	2.5	36	1;4	36	n	0.05	1.5	28	1;2	28	n	0.22	7.5	27	5;10	27	y	0.06	1.0	15	1;1	15	n	0.09	2.0	20	1;3	20	n	0.03	0.5	17	0;1	17	n	0.07	2.0	25	2;2	25	y	0.15	6.0	33	3;9	33	y	ENSMUSG00000026977.18	Marchf7	chr2	protein_coding	membrane associated ring-CH-type finger 7
known_NIR_11470	chr2	60077856	60078234	+	60074014	60078234	A5SS	ENSMUST00000143806.2	known	0.25	3	9	3	9	y	0.67	4	2	4	2	n	0.25	2	6	2	6	n	0.50	2	2	2	2	n	0.40	4	6	4	6	y	0.50	2	2	2	2	n	0.71	10	4	10	4	y	0.25	1	3	1	3	n	0.75	3	1	3	1	n	0.12	1	7	1	7	n	0.67	2	1	2	1	n	0.69	9	4	9	4	y	ENSMUSG00000026977.18	Marchf7	chr2	protein_coding	membrane associated ring-CH-type finger 7
known_NIR_11471	chr2	60082835;60085441	60085415;60087377	-	60082835	60087377	cassetteExon	ENSMUST00000028356.9	known	0.97	2540.5	76	2491;2590	76	y	0.98	2940.0	71	2876;3004	71	y	0.97	3930.5	105	3838;4023	105	y	0.97	2696.0	81	2602;2790	81	y	0.97	3562.5	105	3419;3706	105	y	0.97	2696.0	86	2579;2813	86	y	0.97	2991.5	84	2912;3071	84	y	0.97	2795.5	79	2701;2890	79	y	0.97	2384.0	63	2329;2439	63	y	0.98	3254.0	74	3175;3333	74	y	0.98	2438.5	53	2378;2499	53	y	0.97	3313.0	107	3172;3454	107	y	ENSMUSG00000060703.13	Cd302	chr2	protein_coding	CD302 antigen
known_NIR_11472	chr2	6045372	6051712	+	6045372	6051709	A3SS	ENSMUST00000060092.13	known	0.09	2	20	2	20	y	0.21	5	19	5	19	y	0.26	13	37	13	37	y	0.31	11	24	11	24	y	0.26	9	26	9	26	y	0.48	10	11	10	11	y	0.16	7	36	7	36	y	0.47	9	10	9	10	y	0.00	0	19	0	19	n	0.33	13	26	13	26	y	0.13	4	26	4	26	y	0.15	5	29	5	29	y	ENSMUSG00000043241.15	Upf2	chr2	protein_coding	UPF2 regulator of nonsense transcripts homolog (yeast)
known_NIR_11473	chr2	60589198;60590150	60590103;60592397	-	60589198	60592397	cassetteExon	ENSMUST00000028347.13	known	0.23	7.0	23	6;8	23	y	0.14	4.5	27	2;7	27	y	0.08	7.0	84	6;8	84	y	0.14	6.0	37	6;6	37	y	0.19	11.5	50	13;10	50	y	0.13	6.5	42	7;6	42	y	0.24	10.0	32	8;12	32	y	0.16	5.0	27	3;7	27	y	0.24	6.0	19	6;6	19	y	0.06	3.0	50	3;3	50	y	0.14	3.5	21	4;3	21	y	0.17	9.5	48	7;12	48	y	ENSMUSG00000026970.17	Rbms1	chr2	protein_coding	RNA binding motif, single stranded interacting protein 1
known_NIR_11474	chr2	60672816	60711462	-	60672816	60793035	A5SS	ENSMUST00000028347.13	known	0.44	7	9	7	9	y	0.18	3	14	3	14	y	0.62	28	17	28	17	y	0.18	3	14	3	14	y	0.57	21	16	21	16	y	0.44	8	10	8	10	y	0.24	5	16	5	16	y	0.32	7	15	7	15	y	0.40	4	6	4	6	y	0.12	3	22	3	22	y	0.36	4	7	4	7	y	0.50	11	11	11	11	y	ENSMUSG00000026970.17	Rbms1	chr2	protein_coding	RNA binding motif, single stranded interacting protein 1
known_NIR_11475	chr2	6118924	6134439	-	6118924	6134707	A5SS	ENSMUST00000054254.12	known	0.73	11	4	11	4	y	0.95	20	1	20	1	n	0.93	25	2	25	2	y	0.95	20	1	20	1	n	0.85	23	4	23	4	y	0.90	18	2	18	2	y	0.95	18	1	18	1	n	1.00	22	0	22	0	n	1.00	5	0	5	0	n	0.82	23	5	23	5	y	0.94	16	1	16	1	n	0.93	14	1	14	1	n	ENSMUSG00000045319.14	Proser2	chr2	protein_coding	proline and serine rich 2
known_NIR_11476	chr2	6118924	6134707	-	6118924	6134853	A5SS	ENSMUST00000114942.9	known	0.18	4	18	4	18	y	0.07	1	13	1	13	n	0.06	2	32	2	32	y	0.04	1	23	1	23	n	0.11	4	33	4	33	y	0.09	2	21	2	21	y	0.05	1	18	1	18	n	0.00	0	40	0	40	n	0.00	0	27	0	27	n	0.17	5	24	5	24	y	0.04	1	24	1	24	n	0.04	1	25	1	25	n	ENSMUSG00000045319.14	Proser2	chr2	protein_coding	proline and serine rich 2
known_NIR_11477	chr2	6118924	6134853	-	6134640	6134853	3pMXE	ENSMUST00000194054.2	known	0.69	18	8	18	8	y	0.72	13	5	13	5	y	0.86	32	5	32	5	y	0.70	23	10	23	10	y	0.77	33	10	33	10	y	0.81	21	5	21	5	y	0.55	18	15	18	15	y	1.00	40	0	40	0	n	1.00	27	0	27	0	n	0.83	24	5	24	5	y	0.89	24	3	24	3	y	0.86	25	4	25	4	y	ENSMUSG00000045319.14	Proser2	chr2	protein_coding	proline and serine rich 2
known_NIR_11478	chr2	6118924;6134640	6134439;6134853	-	6118924	6134853	cassetteExon	ENSMUST00000114942.9	known	0.35	9.5	18	11;8	18	y	0.49	12.5	13	20;5	13	y	0.32	15.0	32	25;5	32	y	0.39	15.0	23	20;10	23	y	0.33	16.5	33	23;10	33	y	0.35	11.5	21	18;5	21	y	0.48	16.5	18	18;15	18	y	0.22	11.0	40	22;0	40	n	0.08	2.5	27	5;0	27	n	0.37	14.0	24	23;5	24	y	0.28	9.5	24	16;3	24	y	0.26	9.0	25	14;4	25	y	ENSMUSG00000045319.14	Proser2	chr2	protein_coding	proline and serine rich 2
known_NIR_11479	chr2	61423552	61443995	+	61409037	61443995	A5SS	ENSMUST00000112502.8	known	0.92	22	2	22	2	y	0.93	14	1	14	1	n	1.00	49	0	49	0	n	0.94	30	2	30	2	y	1.00	31	0	31	0	n	1.00	40	0	40	0	n	1.00	21	0	21	0	n	1.00	23	0	23	0	n	1.00	15	0	15	0	n	1.00	35	0	35	0	n	1.00	14	0	14	0	n	0.94	29	2	29	2	y	ENSMUSG00000064289.16	Tank	chr2	protein_coding	TRAF family member-associated Nf-kappa B activator
known_NIR_11480	chr2	61423552;61424545	61424341;61443995	+	61423552	61443995	cassetteExon	ENSMUST00000112495.8	known	0.10	2.5	22	0;5	22	n	0.07	1.0	14	1;1	14	n	0.11	6.0	49	5;7	49	y	0.08	2.5	30	3;2	30	y	0.05	1.5	31	2;1	31	n	0.09	4.0	40	3;5	40	y	0.16	4.0	21	0;8	21	n	0.13	3.5	23	2;5	23	y	0.14	2.5	15	1;4	15	n	0.12	5.0	35	3;7	35	y	0.07	1.0	14	1;1	14	n	0.17	6.0	29	5;7	29	y	ENSMUSG00000064289.16	Tank	chr2	protein_coding	TRAF family member-associated Nf-kappa B activator
known_NIR_11481	chr2	61444142	61457247	+	61444142	61457250	A3SS	ENSMUST00000112502.8	known	0.15	6	35	6	35	y	0.20	6	24	6	24	y	0.27	26	72	26	72	y	0.26	10	29	10	29	y	0.28	19	49	19	49	y	0.27	15	40	15	40	y	0.28	13	33	13	33	y	0.23	14	46	14	46	y	0.32	10	21	10	21	y	0.20	9	37	9	37	y	0.18	6	28	6	28	y	0.26	14	40	14	40	y	ENSMUSG00000064289.16	Tank	chr2	protein_coding	TRAF family member-associated Nf-kappa B activator
known_NIR_11482	chr2	61458183;61459716	61459629;61474059	+	61458183	61474059	cassetteExon	ENSMUST00000112502.8	known	0.05	2.0	36	0;4	36	n	0.00	0.0	25	0;0	25	n	0.01	1.0	95	0;2	95	n	0.06	2.0	31	2;2	31	y	0.03	2.0	57	2;2	57	y	0.07	3.5	48	5;2	48	y	0.02	1.0	48	0;2	48	n	0.02	1.0	51	2;0	51	n	0.00	0.0	61	0;0	61	n	0.03	2.0	59	0;4	59	n	0.04	1.5	37	0;3	37	n	0.01	0.5	40	1;0	40	n	ENSMUSG00000064289.16	Tank	chr2	protein_coding	TRAF family member-associated Nf-kappa B activator
known_NIR_11483	chr2	61546301	61550788	+	61542217	61550788	A5SS	ENSMUST00000028278.14	known	0.00	0	106	0	106	n	0.00	0	50	0	50	n	0.04	5	114	5	114	y	0.00	0	126	0	126	n	0.01	1	129	1	129	n	0.00	0	54	0	54	n	0.00	0	108	0	108	n	0.00	0	59	0	59	n	0.00	0	102	0	102	n	0.00	0	128	0	128	n	0.00	0	79	0	79	n	0.00	0	102	0	102	n	ENSMUSG00000026914.16	Psmd14	chr2	protein_coding	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14
known_NIR_11484	chr2	61553105	61581188	+	61553105	61590980	A3SS	ENSMUST00000028278.14	known	0.00	0	110	0	110	n	0.00	0	83	0	83	n	0.00	0	147	0	147	n	0.00	0	155	0	155	n	0.01	2	149	2	149	y	0.00	0	63	0	63	n	0.00	0	120	0	120	n	0.00	0	71	0	71	n	0.00	0	130	0	130	n	0.00	0	161	0	161	n	0.00	0	126	0	126	n	0.00	0	145	0	145	n	ENSMUSG00000026914.16	Psmd14	chr2	protein_coding	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14
known_NIR_11485	chr2	61553192	61590980	+	61553105	61590980	A5SS	ENSMUST00000028278.14	known	0.00	0	110	0	110	n	0.00	0	83	0	83	n	0.00	0	147	0	147	n	0.00	0	155	0	155	n	0.00	0	149	0	149	n	0.00	0	63	0	63	n	0.00	0	120	0	120	n	0.00	0	71	0	71	n	0.02	2	130	2	130	y	0.00	0	161	0	161	n	0.00	0	126	0	126	n	0.00	0	145	0	145	n	ENSMUSG00000026914.16	Psmd14	chr2	protein_coding	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14
known_NIR_11486	chr2	61595852	61607017	+	61595343	61607017	A5SS	ENSMUST00000028278.14	known	0.00	0	181	0	181	n	0.01	1	164	1	164	n	0.00	1	212	1	212	n	0.00	0	224	0	224	n	0.00	0	252	0	252	n	0.00	0	96	0	96	n	0.00	0	212	0	212	n	0.03	3	108	3	108	y	0.00	0	189	0	189	n	0.00	0	233	0	233	n	0.01	1	199	1	199	n	0.00	0	259	0	259	n	ENSMUSG00000026914.16	Psmd14	chr2	protein_coding	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14
known_NIR_11487	chr2	62187351	62187714	-	62187351	62189128	A5SS	ENSMUST00000047812.8	known	0.03	2	73	2	73	y	0.01	1	78	1	78	n	0.00	0	39	0	39	n	0.00	0	113	0	113	n	0.02	2	93	2	93	y	0.00	0	29	0	29	n	0.01	1	94	1	94	n	0.00	0	49	0	49	n	0.01	1	94	1	94	n	0.00	0	163	0	163	n	0.00	0	72	0	72	n	0.00	0	116	0	116	n	ENSMUSG00000035000.9	Dpp4	chr2	protein_coding	dipeptidylpeptidase 4
known_NIR_11488	chr2	64743197	64747173	-	64743197	64745060	5pMXE	ENSMUST00000134020.2	known	0.00	0	151	0	151	n	0.01	2	177	2	177	y	0.00	0	182	0	182	n	0.01	1	136	1	136	n	0.00	0	181	0	181	n	0.00	0	104	0	104	n	0.00	0	188	0	188	n	0.00	0	88	0	88	n	0.00	0	115	0	115	n	0.00	0	214	0	214	n	0.00	0	156	0	156	n	0.00	0	159	0	159	n	ENSMUSG00000026888.15	Grb14	chr2	protein_coding	growth factor receptor bound protein 14
known_NIR_11489	chr2	64743197	64747173	-	64745153	64747173	A3SS&ES	ENSMUST00000149193.8	known	0.00	0	166	0	166	n	0.01	2	164	2	164	y	0.00	0	193	0	193	n	0.01	1	146	1	146	n	0.00	0	201	0	201	n	0.00	0	88	0	88	n	0.00	0	217	0	217	n	0.00	0	102	0	102	n	0.00	0	181	0	181	n	0.00	0	231	0	231	n	0.00	0	178	0	178	n	0.00	0	170	0	170	n	ENSMUSG00000026888.15	Grb14	chr2	protein_coding	growth factor receptor bound protein 14
known_NIR_11490	chr2	64743197;64745153	64745060;64747173	-	64743197	64747173	cassetteExon	ENSMUST00000150643.8	known	1.00	158.5	0	151;166	0	n	0.99	170.5	2	177;164	2	y	1.00	187.5	0	182;193	0	n	0.99	141.0	1	136;146	1	n	1.00	191.0	0	181;201	0	n	1.00	96.0	0	104;88	0	n	1.00	202.5	0	188;217	0	n	1.00	95.0	0	88;102	0	n	1.00	148.0	0	115;181	0	n	1.00	222.5	0	214;231	0	n	1.00	167.0	0	156;178	0	n	1.00	164.5	0	159;170	0	n	ENSMUSG00000026888.15	Grb14	chr2	protein_coding	growth factor receptor bound protein 14
known_NIR_11491	chr2	64784062	64805901	-	64784062	64851431	A5SS	ENSMUST00000028252.14	known	0.16	13	69	13	69	y	0.13	9	58	9	58	y	0.28	37	95	37	95	y	0.18	20	92	20	92	y	0.18	27	120	27	120	y	0.30	16	38	16	38	y	0.11	10	79	10	79	y	0.31	23	51	23	51	y	0.20	20	81	20	81	y	0.21	32	117	32	117	y	0.19	18	78	18	78	y	0.17	21	102	21	102	y	ENSMUSG00000026888.15	Grb14	chr2	protein_coding	growth factor receptor bound protein 14
known_NIR_11492	chr2	64929733	64932413	-	64929736	64932413	A3SS	ENSMUST00000112429.9	known	0.17	6	29	6	29	y	0.08	2	24	2	24	y	0.20	12	49	12	49	y	0.22	14	51	14	51	y	0.13	9	59	9	59	y	0.16	4	21	4	21	y	0.17	11	52	11	52	y	0.30	7	16	7	16	y	0.30	13	30	13	30	y	0.17	9	45	9	45	y	0.14	5	31	5	31	y	0.14	10	62	10	62	y	ENSMUSG00000034903.19	Cobll1	chr2	protein_coding	Cobl-like 1
known_NIR_11493	chr2	64933738	64937356	-	64933738	64936059	5pMXE	ENSMUST00000155768.2	known	0.52	25	23	25	23	y	0.43	9	12	9	12	y	0.30	15	35	15	35	y	0.57	36	27	36	27	y	0.31	20	45	20	45	y	0.62	13	8	13	8	y	0.35	20	37	20	37	y	0.38	16	26	16	26	y	0.45	17	21	17	21	y	0.60	34	23	34	23	y	0.39	13	20	13	20	y	0.49	31	32	31	32	y	ENSMUSG00000034903.19	Cobll1	chr2	protein_coding	Cobl-like 1
known_NIR_11494	chr2	64933738	64937356	-	64933738;64936172	64936059;64937356	ES	ENSMUST00000112429.9	known	0.57	25	18.5	25	23;14	y	0.53	9	8.0	9	12;4	y	0.32	15	31.5	15	35;28	y	0.55	36	30.0	36	27;33	y	0.33	20	40.5	20	45;36	y	0.53	13	11.5	13	8;15	y	0.42	20	28.0	20	37;19	y	0.42	16	22.5	16	26;19	y	0.45	17	20.5	17	21;20	y	0.60	34	23.0	34	23;23	y	0.46	13	15.5	13	20;11	y	0.51	31	29.5	31	32;27	y	ENSMUSG00000034903.19	Cobll1	chr2	protein_coding	Cobl-like 1
known_NIR_11495	chr2	64956649;64962878	64962840;64963923	-	64956649	64963923	cassetteExon	ENSMUST00000112429.9	known	0.71	17.5	7	15;20	7	y	0.82	18.0	4	21;15	4	y	0.80	39.5	10	41;38	10	y	0.88	58.5	8	61;56	8	y	0.89	47.0	6	45;49	6	y	0.90	18.5	2	18;19	2	y	0.92	47.5	4	54;41	4	y	0.91	30.0	3	28;32	3	y	0.90	26.0	3	29;23	3	y	0.84	46.5	9	40;53	9	y	0.81	21.0	5	20;22	5	y	0.91	41.5	4	38;45	4	y	ENSMUSG00000034903.19	Cobll1	chr2	protein_coding	Cobl-like 1
known_NIR_11496	chr2	64981508	65068707	-	64981511	65068707	A3SS	ENSMUST00000112429.9	known	0.45	9	11	9	11	y	0.00	0	10	0	10	n	0.48	14	15	14	15	y	0.58	11	8	11	8	y	0.44	7	9	7	9	y	0.50	4	4	4	4	n	0.17	2	10	2	10	y	0.20	1	4	1	4	n	0.33	2	4	2	4	n	0.19	3	13	3	13	y	0.40	6	9	6	9	y	0.28	5	13	5	13	y	ENSMUSG00000034903.19	Cobll1	chr2	protein_coding	Cobl-like 1
known_NIR_11497	chr2	6552024	6558596	-	6552024;6554786	6554643;6558596	ES	ENSMUST00000002176.13	known	0.00	0	7.5	0	5;10	n	0.20	1	4.0	1	8;0	n	0.22	4	14.5	4	15;14	y	0.00	0	5.5	0	8;3	n	0.00	0	4.5	0	5;4	n	0.33	4	8.0	4	4;12	y	0.55	6	5.0	6	6;4	y	0.17	2	10.0	2	12;8	y	0.00	0	4.0	0	5;3	n	0.00	0	8.0	0	10;6	n	0.25	3	9.0	3	13;5	y	0.13	1	6.5	1	9;4	n	ENSMUSG00000002107.19	Celf2	chr2	protein_coding	CUGBP, Elav-like family member 2
known_NIR_11498	chr2	6558775	6565470	-	6558775	6565482	A5SS	ENSMUST00000002176.13	known	0.83	5	1	5	1	n	0.50	2	2	2	2	n	0.42	11	15	11	15	y	0.50	7	7	7	7	y	0.25	2	6	2	6	n	0.60	3	2	3	2	n	0.50	5	5	5	5	y	0.50	5	5	5	5	y	0.33	2	4	2	4	n	0.25	2	6	2	6	n	0.38	3	5	3	5	n	0.50	1	1	1	1	n	ENSMUSG00000002107.19	Celf2	chr2	protein_coding	CUGBP, Elav-like family member 2
known_NIR_11499	chr2	67935067	67948057	+	67903917	67948057	A5SS	ENSMUST00000180887.2	known	0.00	0	35	0	35	n	0.04	1	26	1	26	n	0.01	4	279	4	279	y	0.00	0	83	0	83	n	0.01	1	181	1	181	n	0.01	1	165	1	165	n	0.00	0	142	0	142	n	0.00	0	145	0	145	n	0.00	0	32	0	32	n	0.00	0	53	0	53	n	0.00	0	24	0	24	n	0.00	0	46	0	46	n	ENSMUSG00000034780.7	B3galt1	chr2	protein_coding	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1
known_NIR_11500	chr2	69035522	69036408	-	69035522	69036174	A5SS	ENSMUST00000112320.8	known	0.79	11	3	11	3	y	0.33	2	4	2	4	n	0.25	1	3	1	3	n	0.50	6	6	6	6	y	0.50	11	11	11	11	y	0.00	0	2	0	2	n	0.27	11	30	11	30	y	0.67	2	1	2	1	n	0.29	2	5	2	5	n	0.50	12	12	12	12	y	0.14	2	12	2	12	y	0.38	6	10	6	10	y	ENSMUSG00000005233.17	Spc25	chr2	protein_coding	SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)
known_NIR_11501	chr2	69159716;69160882	69160808;69172861	-	69159716	69172861	cassetteExon	ENSMUST00000102710.10	known	0.20	18.5	73	18;19	73	y	0.11	7.5	59	8;7	59	y	0.52	15.0	14	13;17	14	y	0.14	27.0	167	28;26	167	y	0.16	35.0	188	40;30	188	y	0.29	10.0	25	8;12	25	y	0.19	28.0	123	32;24	123	y	0.22	13.0	45	13;13	45	y	0.18	31.5	148	41;22	148	y	0.15	38.5	215	43;34	215	y	0.17	26.0	131	28;24	131	y	0.20	50.0	201	58;42	201	y	ENSMUSG00000027048.16	Abcb11	chr2	protein_coding	ATP-binding cassette, sub-family B (MDR/TAP), member 11
known_NIR_11502	chr2	69530582	69532794	-	69530582	69532707	A5SS	ENSMUST00000073152.13	known	0.00	0	30	0	30	n	0.03	1	30	1	30	n	0.00	0	15	0	15	n	0.03	2	57	2	57	y	0.03	1	30	1	30	n	0.13	2	13	2	13	y	0.05	2	42	2	42	y	0.00	0	20	0	20	n	0.15	4	22	4	22	y	0.00	0	60	0	60	n	0.00	0	49	0	49	n	0.00	0	53	0	53	n	ENSMUSG00000027086.17	Fastkd1	chr2	protein_coding	FAST kinase domains 1
known_NIR_11503	chr2	69553301;69561924	69561835;69562090	+	69553301	69562090	cassetteExon	ENSMUST00000090858.10	known	0.25	2.0	6	1;3	6	n	0.20	0.5	2	0;1	2	n	0.28	5.5	14	2;9	14	y	0.36	4.0	7	2;6	7	y	0.27	5.5	15	5;6	15	y	0.12	1.5	11	0;3	11	n	0.23	3.0	10	4;2	10	y	0.22	2.5	9	1;4	9	n	0.30	3.0	7	2;4	7	y	0.38	2.5	4	2;3	4	n	0.23	1.5	5	1;2	5	n	0.15	2.0	11	1;3	11	n	ENSMUSG00000042133.17	Ppig	chr2	protein_coding	peptidyl-prolyl isomerase G (cyclophilin G)
known_NIR_11504	chr2	69553707	69562090	+	69553301	69562090	A5SS	ENSMUST00000090858.10	known	0.45	5	6	5	6	y	0.60	3	2	3	2	n	0.48	13	14	13	14	y	0.46	6	7	6	7	y	0.50	15	15	15	15	y	0.45	9	11	9	11	y	0.47	9	10	9	10	y	0.31	4	9	4	9	y	0.42	5	7	5	7	y	0.78	14	4	14	4	y	0.74	14	5	14	5	y	0.50	11	11	11	11	y	ENSMUSG00000042133.17	Ppig	chr2	protein_coding	peptidyl-prolyl isomerase G (cyclophilin G)
known_NIR_11505	chr2	69553707	69562090	+	69561924	69562090	A5SS&ES	ENSMUST00000125105.8	known	0.62	5	3	5	3	n	0.75	3	1	3	1	n	0.59	13	9	13	9	y	0.50	6	6	6	6	y	0.71	15	6	15	6	y	0.75	9	3	9	3	y	0.82	9	2	9	2	y	0.50	4	4	4	4	n	0.56	5	4	5	4	n	0.82	14	3	14	3	y	0.88	14	2	14	2	y	0.79	11	3	11	3	y	ENSMUSG00000042133.17	Ppig	chr2	protein_coding	peptidyl-prolyl isomerase G (cyclophilin G)
known_NIR_11506	chr2	69553707;69561924	69561835;69562090	+	69553707	69562090	cassetteExon	ENSMUST00000040915.15	known	0.33	2.5	5	2;3	5	y	0.57	4.0	3	7;1	3	n	0.35	7.0	13	5;9	13	y	0.37	3.5	6	1;6	6	n	0.21	4.0	15	2;6	15	y	0.22	2.5	9	2;3	9	y	0.10	1.0	9	0;2	9	n	0.38	2.5	4	1;4	4	n	0.29	2.0	5	0;4	5	n	0.18	3.0	14	3;3	14	y	0.20	3.5	14	5;2	14	y	0.19	2.5	11	2;3	11	y	ENSMUSG00000042133.17	Ppig	chr2	protein_coding	peptidyl-prolyl isomerase G (cyclophilin G)
known_NIR_11507	chr2	69620248	69620630	+	69620300	69620630	A5SS	ENSMUST00000151298.8	known	0.00	0	31	0	31	n	0.25	7	21	7	21	y	0.19	8	35	8	35	y	0.06	2	30	2	30	y	0.21	14	54	14	54	y	0.08	2	22	2	22	y	0.30	13	30	13	30	y	0.19	7	29	7	29	y	0.19	7	30	7	30	y	0.13	5	33	5	33	y	0.17	5	25	5	25	y	0.16	6	31	6	31	y	ENSMUSG00000027088.11	Phospho2	chr2	protein_coding	phosphatase, orphan 2
known_NIR_11508	chr2	69620665	69622681	+	69620665	69622717	A3SS	ENSMUST00000151298.8	known	0.92	45	4	45	4	y	0.92	22	2	22	2	y	0.84	41	8	41	8	y	0.96	47	2	47	2	y	0.84	59	11	59	11	y	0.74	25	9	25	9	y	0.89	47	6	47	6	y	0.88	29	4	29	4	y	0.85	35	6	35	6	y	0.85	50	9	50	9	y	0.85	33	6	33	6	y	0.91	49	5	49	5	y	ENSMUSG00000027088.11	Phospho2	chr2	protein_coding	phosphatase, orphan 2
known_NIR_11509	chr2	69620665	69622737	+	69620665	69622681	A3SS	ENSMUST00000028494.9	known	0.00	0	45	0	45	n	0.08	2	22	2	22	y	0.09	4	41	4	41	y	0.00	0	47	0	47	n	0.08	5	59	5	59	y	0.00	0	25	0	25	n	0.02	1	47	1	47	n	0.06	2	29	2	29	y	0.00	0	35	0	35	n	0.02	1	50	1	50	n	0.06	2	33	2	33	y	0.00	0	49	0	49	n	ENSMUSG00000027088.11	Phospho2	chr2	protein_coding	phosphatase, orphan 2
known_NIR_11510	chr2	69620665	69622737	+	69620665	69622717	A3SS	ENSMUST00000151298.8	known	0.00	0	4	0	4	n	0.50	2	2	2	2	n	0.33	4	8	4	8	y	0.00	0	2	0	2	n	0.31	5	11	5	11	y	0.00	0	9	0	9	n	0.14	1	6	1	6	n	0.33	2	4	2	4	n	0.00	0	6	0	6	n	0.10	1	9	1	9	n	0.25	2	6	2	6	n	0.00	0	5	0	5	n	ENSMUSG00000027088.11	Phospho2	chr2	protein_coding	phosphatase, orphan 2
known_NIR_11511	chr2	69622835	69629653	+	69622835	69625820	3pMXE	ENSMUST00000151298.8	known	0.00	0	61	0	61	n	0.00	0	63	0	63	n	0.02	1	64	1	64	n	0.00	0	77	0	77	n	0.00	0	98	0	98	n	0.05	2	40	2	40	y	0.00	0	83	0	83	n	0.00	0	48	0	48	n	0.00	0	63	0	63	n	0.00	0	78	0	78	n	0.00	0	58	0	58	n	0.00	0	71	0	71	n	ENSMUSG00000027088.11	Phospho2	chr2	protein_coding	phosphatase, orphan 2
known_NIR_11512	chr2	69692083	69693568	+	69692056	69693568	A5SS	ENSMUST00000090852.11	known	0.00	0	80	0	80	n	0.08	5	61	5	61	y	0.02	3	137	3	137	y	0.01	1	93	1	93	n	0.05	5	99	5	99	y	0.00	0	55	0	55	n	0.03	3	111	3	111	y	0.02	1	59	1	59	n	0.00	0	76	0	76	n	0.01	1	94	1	94	n	0.00	0	64	0	64	n	0.00	0	97	0	97	n	ENSMUSG00000068882.14	Ssb	chr2	protein_coding	Sjogren syndrome antigen B
known_NIR_11513	chr2	69700924	69701025	+	69700924	69701022	A3SS	ENSMUST00000090852.11	known	0.05	12	232	12	232	y	0.08	14	170	14	170	y	0.06	16	245	16	245	y	0.04	8	171	8	171	y	0.07	19	253	19	253	y	0.09	12	128	12	128	y	0.07	17	234	17	234	y	0.04	5	109	5	109	y	0.08	14	172	14	172	y	0.07	17	234	17	234	y	0.11	21	178	21	178	y	0.10	23	197	23	197	y	ENSMUSG00000068882.14	Ssb	chr2	protein_coding	Sjogren syndrome antigen B
known_NIR_11514	chr2	69704279	69711111	-	69704279;69709528	69709446;69711111	ES	ENSMUST00000060447.13	known	0.18	12	54.0	12	53;55	y	0.23	15	49.0	15	54;44	y	0.15	7	39.5	7	35;44	y	0.15	9	51.0	9	39;63	y	0.12	8	57.5	8	54;61	y	0.23	7	23.5	7	24;23	y	0.14	9	57.0	9	53;61	y	0.21	5	19.0	5	14;24	y	0.25	18	54.0	18	49;59	y	0.18	16	72.5	16	58;87	y	0.21	13	47.5	13	49;46	y	0.14	12	71.0	12	55;87	y	ENSMUSG00000051730.16	Mettl5	chr2	protein_coding	methyltransferase like 5
known_NIR_11515	chr2	69704279	69711111	-	69709528	69711111	3pMXE	ENSMUST00000135487.2	known	0.18	12	55	12	55	y	0.25	15	44	15	44	y	0.14	7	44	7	44	y	0.12	9	63	9	63	y	0.12	8	61	8	61	y	0.23	7	23	7	23	y	0.13	9	61	9	61	y	0.17	5	24	5	24	y	0.23	18	59	18	59	y	0.16	16	87	16	87	y	0.22	13	46	13	46	y	0.12	12	87	12	87	y	ENSMUSG00000051730.16	Mettl5	chr2	protein_coding	methyltransferase like 5
known_NIR_11516	chr2	69744897	69747424	+	69744897	69747421	A3SS	ENSMUST00000055758.16	known	0.16	4	21	4	21	y	0.46	6	7	6	7	y	0.39	14	22	14	22	y	0.31	16	36	16	36	y	0.18	11	50	11	50	y	0.60	12	8	12	8	y	0.26	18	51	18	51	y	0.26	10	29	10	29	y	0.32	11	23	11	23	y	0.40	27	41	27	41	y	0.20	5	20	5	20	y	0.28	9	23	9	23	y	ENSMUSG00000044308.18	Ubr3	chr2	protein_coding	ubiquitin protein ligase E3 component n-recognin 3
known_NIR_11517	chr2	69821981	69824020	+	69821969	69824020	A5SS	ENSMUST00000055758.16	known	0.65	46	25	46	25	y	0.64	30	17	30	17	y	0.51	44	42	44	42	y	0.66	71	36	71	36	y	0.61	81	51	81	51	y	0.64	43	24	43	24	y	0.51	56	54	56	54	y	0.74	39	14	39	14	y	0.49	37	39	37	39	y	0.47	57	64	57	64	y	0.54	43	37	43	37	y	0.49	43	44	43	44	y	ENSMUSG00000044308.18	Ubr3	chr2	protein_coding	ubiquitin protein ligase E3 component n-recognin 3
known_NIR_11518	chr2	69824156;69829562	69829429;69830802	+	69824156	69830802	cassetteExon	ENSMUST00000055758.16	known	0.03	2.5	80	3;2	80	y	0.02	1.0	49	1;1	49	n	0.02	2.5	99	1;4	99	n	0.04	4.5	117	6;3	117	y	0.00	0.5	138	0;1	138	n	0.00	0.0	47	0;0	47	n	0.02	2.5	158	1;4	158	n	0.00	0.0	53	0;0	53	n	0.02	2.0	89	4;0	89	n	0.03	3.0	102	4;2	102	y	0.01	1.0	73	0;2	73	n	0.05	5.0	102	4;6	102	y	ENSMUSG00000044308.18	Ubr3	chr2	protein_coding	ubiquitin protein ligase E3 component n-recognin 3
known_NIR_11519	chr2	70492104	70506809	+	70492104;70503105	70502909;70506809	ES	ENSMUST00000112201.8	known	0.93	168	12.0	168	8;16	y	0.89	119	14.5	119	10;19	y	0.84	229	45.0	229	41;49	y	0.93	202	14.5	202	8;21	y	0.91	222	22.0	222	24;20	y	0.86	134	22.5	134	21;24	y	0.91	210	21.0	210	20;22	y	0.89	134	16.5	134	12;21	y	0.91	130	13.0	130	10;16	y	0.87	149	21.5	149	11;32	y	0.89	133	16.0	133	12;20	y	0.92	151	13.0	151	14;12	y	ENSMUSG00000014959.13	Gorasp2	chr2	protein_coding	golgi reassembly stacking protein 2
known_NIR_11520	chr2	70492713	70506809	+	70492104	70506809	A5SS	ENSMUST00000028509.11	known	0.00	0	168	0	168	n	0.00	0	119	0	119	n	0.01	3	229	3	229	y	0.00	1	202	1	202	n	0.00	1	222	1	222	n	0.00	0	134	0	134	n	0.01	2	210	2	210	y	0.00	0	134	0	134	n	0.00	0	130	0	130	n	0.01	1	149	1	149	n	0.00	0	133	0	133	n	0.00	0	151	0	151	n	ENSMUSG00000014959.13	Gorasp2	chr2	protein_coding	golgi reassembly stacking protein 2
known_NIR_11521	chr2	70492713	70506809	+	70503105	70506809	A5SS&ES	ENSMUST00000112201.8	known	0.00	0	16	0	16	n	0.00	0	19	0	19	n	0.06	3	49	3	49	y	0.05	1	21	1	21	n	0.05	1	20	1	20	n	0.00	0	24	0	24	n	0.08	2	22	2	22	y	0.00	0	21	0	21	n	0.00	0	16	0	16	n	0.03	1	32	1	32	n	0.00	0	20	0	20	n	0.00	0	12	0	12	n	ENSMUSG00000014959.13	Gorasp2	chr2	protein_coding	golgi reassembly stacking protein 2
known_NIR_11522	chr2	70587893	70599206	-	70587893	70655537	A5SS	ENSMUST00000133734.8	known	0.50	2	2	2	2	n	0.00	0	1	0	1	n	0.64	7	4	7	4	y	0.67	2	1	2	1	n	0.44	4	5	4	5	n	0.00	0	1	0	1	n	0.70	7	3	7	3	y	0.50	6	6	6	6	y	0.00	0	1	0	1	n	0.92	11	1	11	1	n	1.00	2	0	2	0	n	0.67	4	2	4	2	n	ENSMUSG00000041997.17	Tlk1	chr2	protein_coding	tousled-like kinase 1
known_NIR_11523	chr2	70587893	70600348	-	70587893;70599274	70599206;70600348	ES	ENSMUST00000135128.8	known	0.94	34	2.0	34	2;2	y	0.96	25	1.0	25	0;2	n	0.92	74	6.5	74	7;6	y	0.96	50	2.0	50	2;2	y	0.89	51	6.0	51	4;8	y	1.00	37	0.0	37	0;0	n	0.84	38	7.5	38	7;8	y	0.86	38	6.0	38	6;6	y	0.98	30	0.5	30	0;1	n	0.83	46	9.5	46	11;8	y	0.93	25	2.0	25	2;2	y	0.92	51	4.5	51	4;5	y	ENSMUSG00000041997.17	Tlk1	chr2	protein_coding	tousled-like kinase 1
known_NIR_11524	chr2	70587893	70655537	-	70587893;70600419	70600348;70655537	ES	ENSMUST00000132542.8	known	0.10	2	18.5	2	34;3	y	0.07	1	12.5	1	25;0	n	0.09	4	38.5	4	74;3	y	0.04	1	25.0	1	50;0	n	0.16	5	25.5	5	51;0	n	0.05	1	18.5	1	37;0	n	0.13	3	19.5	3	38;1	n	0.22	6	21.5	6	38;5	y	0.06	1	15.0	1	30;0	n	0.04	1	25.0	1	46;4	n	0.00	0	12.5	0	25;0	n	0.07	2	26.0	2	51;1	n	ENSMUSG00000041997.17	Tlk1	chr2	protein_coding	tousled-like kinase 1
known_NIR_11525	chr2	70600419	70655537	-	70600419;70617339	70617221;70655537	ES	ENSMUST00000135128.8	known	0.11	3	25.0	3	26;24	y	0.00	0	18.5	0	22;15	n	0.05	3	56.0	3	51;61	y	0.00	0	29.0	0	31;27	n	0.00	0	48.0	0	49;47	n	0.00	0	32.0	0	30;34	n	0.02	1	50.5	1	57;44	n	0.13	5	34.0	5	40;28	y	0.00	0	34.0	0	34;34	n	0.09	4	39.0	4	33;45	y	0.00	0	20.5	0	27;14	n	0.03	1	35.5	1	38;33	n	ENSMUSG00000041997.17	Tlk1	chr2	protein_coding	tousled-like kinase 1
known_NIR_11526	chr2	70617339	70655537	-	70587893	70655537	A3SS	ENSMUST00000133734.8	known	0.92	24	2	24	2	y	0.94	15	1	15	1	n	0.94	61	4	61	4	y	0.96	27	1	27	1	n	0.90	47	5	47	5	y	0.97	34	1	34	1	n	0.94	44	3	44	3	y	0.82	28	6	28	6	y	0.97	34	1	34	1	n	0.98	45	1	45	1	n	1.00	14	0	14	0	n	0.94	33	2	33	2	y	ENSMUSG00000041997.17	Tlk1	chr2	protein_coding	tousled-like kinase 1
known_NIR_11527	chr2	70803736	70810721	-	70803736	70806418	5pMXE	ENSMUST00000124781.2	known	0.00	0	24	0	24	n	0.00	0	16	0	16	n	0.00	0	14	0	14	n	0.00	0	19	0	19	n	0.03	1	31	1	31	n	0.00	0	12	0	12	n	0.12	5	36	5	36	y	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	35	0	35	n	0.04	1	26	1	26	n	0.03	1	29	1	29	n	ENSMUSG00000041975.18	Mettl8	chr2	protein_coding	methyltransferase like 8
known_NIR_11528	chr2	70803736	70810721	-	70803736;70806481	70806418;70810721	ES	ENSMUST00000100037.9	known	0.00	0	24.5	0	24;25	n	0.00	0	15.5	0	16;15	n	0.00	0	14.0	0	14;14	n	0.00	0	21.0	0	19;23	n	0.03	1	29.0	1	31;27	n	0.00	0	10.0	0	12;8	n	0.12	5	37.0	5	36;38	y	0.00	0	11.0	0	10;12	n	0.00	0	13.5	0	13;14	n	0.00	0	37.5	0	35;40	n	0.04	1	21.5	1	26;17	n	0.03	1	28.5	1	29;28	n	ENSMUSG00000041975.18	Mettl8	chr2	protein_coding	methyltransferase like 8
known_NIR_11529	chr2	70812311	70823828	-	70812539	70823828	A3SS	ENSMUST00000100037.9	known	0.36	5	9	5	9	y	0.75	3	1	3	1	n	0.27	3	8	3	8	y	0.37	10	17	10	17	y	0.45	17	21	17	21	y	0.50	5	5	5	5	y	0.58	19	14	19	14	y	0.40	6	9	6	9	y	0.53	9	8	9	8	y	0.34	12	23	12	23	y	0.36	9	16	9	16	y	0.38	8	13	8	13	y	ENSMUSG00000041975.18	Mettl8	chr2	protein_coding	methyltransferase like 8
known_NIR_11530	chr2	70886260	70886839	+	70886463	70886839	A5SS	ENSMUST00000154704.8	known	0.09	1	10	1	10	n	0.00	0	5	0	5	n	0.08	1	11	1	11	n	0.18	3	14	3	14	y	0.06	1	15	1	15	n	0.00	0	5	0	5	n	0.07	1	13	1	13	n	0.18	2	9	2	9	y	0.12	2	14	2	14	y	0.00	0	16	0	16	n	0.12	1	7	1	7	n	0.22	2	7	2	7	n	ENSMUSG00000041966.19	Dcaf17	chr2	protein_coding	DDB1 and CUL4 associated factor 17
known_NIR_11531	chr2	70908508	70912255	+	70908508;70908923	70908818;70912255	ES	ENSMUST00000130292.8	known	0.24	6	18.5	6	15;22	y	0.12	2	14.0	2	13;15	y	0.00	0	14.0	0	14;14	n	0.21	4	15.0	4	17;13	y	0.14	4	25.0	4	22;28	y	0.00	0	17.0	0	14;20	n	0.15	4	22.5	4	22;23	y	0.16	3	15.5	3	20;11	y	0.05	1	17.5	1	14;21	n	0.06	2	31.0	2	25;37	y	0.17	2	10.0	2	8;12	y	0.00	0	20.0	0	19;21	n	ENSMUSG00000041966.19	Dcaf17	chr2	protein_coding	DDB1 and CUL4 associated factor 17
known_NIR_11532	chr2	71042418	71044783	+	71042189	71044783	A5SS	ENSMUST00000112142.8	known	0.64	18	10	18	10	y	0.74	31	11	31	11	y	0.59	50	35	50	35	y	0.70	37	16	37	16	y	0.68	41	19	41	19	y	0.69	18	8	18	8	y	0.77	57	17	57	17	y	0.64	21	12	21	12	y	0.71	40	16	40	16	y	0.52	34	31	34	31	y	0.82	28	6	28	6	y	0.76	35	11	35	11	y	ENSMUSG00000027012.16	Dync1i2	chr2	protein_coding	dynein cytoplasmic 1 intermediate chain 2
known_NIR_11533	chr2	71059034	71066259	+	71059034;71064052	71063993;71066259	ES	ENSMUST00000112142.8	known	1.00	50	0.0	50	0;0	n	1.00	35	0.0	35	0;0	n	1.00	88	0.0	88	0;0	n	0.99	80	1.0	80	0;2	n	0.96	77	3.0	77	4;2	y	1.00	43	0.0	43	0;0	n	1.00	66	0.0	66	0;0	n	0.99	49	0.5	49	1;0	n	1.00	63	0.0	63	0;0	n	1.00	80	0.0	80	0;0	n	1.00	64	0.0	64	0;0	n	0.99	75	1.0	75	0;2	n	ENSMUSG00000027012.16	Dync1i2	chr2	protein_coding	dynein cytoplasmic 1 intermediate chain 2
known_NIR_11534	chr2	71091291	71092995	+	71091291	71092992	A3SS	ENSMUST00000112142.8	known	0.05	8	144	8	144	y	0.07	9	128	9	128	y	0.05	7	143	7	143	y	0.05	5	99	5	99	y	0.08	12	134	12	134	y	0.09	5	53	5	53	y	0.07	13	165	13	165	y	0.06	5	75	5	75	y	0.05	6	107	6	107	y	0.07	11	138	11	138	y	0.00	0	130	0	130	n	0.05	8	145	8	145	y	ENSMUSG00000027012.16	Dync1i2	chr2	protein_coding	dynein cytoplasmic 1 intermediate chain 2
known_NIR_11535	chr2	71154459	71158778	-	71154459	71163949	A5SS	ENSMUST00000151937.8	known	0.00	0	25	0	25	n	0.05	1	21	1	21	n	0.00	0	44	0	44	n	0.09	3	30	3	30	y	0.00	0	19	0	19	n	0.00	0	41	0	41	n	0.05	3	60	3	60	y	0.00	0	21	0	21	n	0.00	0	6	0	6	n	0.03	1	35	1	35	n	0.14	2	12	2	12	y	0.05	2	39	2	39	y	ENSMUSG00000027010.17	Slc25a12	chr2	protein_coding	solute carrier family 25 (mitochondrial carrier, Aralar), member 12
known_NIR_11536	chr2	71160374	71163949	-	71154459	71163949	A3SS	ENSMUST00000151937.8	known	0.07	2	25	2	25	y	0.00	0	21	0	21	n	0.06	3	44	3	44	y	0.06	2	30	2	30	y	0.24	6	19	6	19	y	0.05	2	41	2	41	y	0.02	1	60	1	60	n	0.05	1	21	1	21	n	0.00	0	6	0	6	n	0.00	0	35	0	35	n	0.00	0	12	0	12	n	0.05	2	39	2	39	y	ENSMUSG00000027010.17	Slc25a12	chr2	protein_coding	solute carrier family 25 (mitochondrial carrier, Aralar), member 12
known_NIR_11537	chr2	71283742;71331213	71331123;71337129	+	71283742	71337129	cassetteExon	ENSMUST00000037210.9	known	0.18	14.0	65	9;19	65	y	0.19	8.5	36	7;10	36	y	0.28	19.0	49	7;31	49	y	0.24	19.0	59	13;25	59	y	0.17	19.5	93	10;29	93	y	0.09	4.5	48	0;9	48	n	0.13	13.0	88	7;19	88	y	0.15	9.0	53	4;14	53	y	0.18	13.5	60	12;15	60	y	0.15	13.5	74	12;15	74	y	0.12	8.0	58	4;12	58	y	0.16	10.5	54	5;16	54	y	ENSMUSG00000041921.17	Metap1d	chr2	protein_coding	methionyl aminopeptidase type 1D (mitochondrial)
known_NIR_11538	chr2	71342512	71352877	+	71342512;71346144	71345981;71352877	ES	ENSMUST00000037210.9	known	0.02	2	118.5	2	126;111	y	0.00	0	139.5	0	137;142	n	0.08	8	87.5	8	94;81	y	0.01	1	112.5	1	114;111	n	0.04	7	171.0	7	174;168	y	0.10	9	80.5	9	79;82	y	0.02	4	190.5	4	190;191	y	0.03	3	101.0	3	105;97	y	0.00	0	131.0	0	145;117	n	0.02	3	143.5	3	146;141	y	0.00	0	140.5	0	116;165	n	0.02	2	118.5	2	111;126	y	ENSMUSG00000041921.17	Metap1d	chr2	protein_coding	methionyl aminopeptidase type 1D (mitochondrial)
known_NIR_11539	chr2	71346144	71346242	+	71346144	71352877	A3SS	ENSMUST00000037210.9	known	0.00	0	111	0	111	n	0.00	0	142	0	142	n	0.04	3	81	3	81	y	0.00	0	111	0	111	n	0.00	0	168	0	168	n	0.00	0	82	0	82	n	0.00	0	191	0	191	n	0.00	0	97	0	97	n	0.00	0	117	0	117	n	0.00	0	141	0	141	n	0.01	1	165	1	165	n	0.00	0	126	0	126	n	ENSMUSG00000041921.17	Metap1d	chr2	protein_coding	methionyl aminopeptidase type 1D (mitochondrial)
known_NIR_11540	chr2	71346144	71347393	+	71346144	71352877	A3SS	ENSMUST00000037210.9	known	0.03	3	111	3	111	y	0.02	3	142	3	142	y	0.00	0	81	0	81	n	0.02	2	111	2	111	y	0.02	3	168	3	168	y	0.04	3	82	3	82	y	0.02	3	191	3	191	y	0.00	0	97	0	97	n	0.02	2	117	2	117	y	0.02	3	141	3	141	y	0.00	0	165	0	165	n	0.00	0	126	0	126	n	ENSMUSG00000041921.17	Metap1d	chr2	protein_coding	methionyl aminopeptidase type 1D (mitochondrial)
known_NIR_11541	chr2	71679850	71686198	+	71679850	71683878	3pMXE	ENSMUST00000155249.2	known	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.38	5	8	5	8	y	1.00	2	0	2	0	n	0.11	1	8	1	8	n	1.00	1	0	1	0	n	0.73	8	3	8	3	y	0.67	4	2	4	2	n	0.50	1	1	1	1	n	0.60	3	2	3	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	ENSMUSG00000027111.17	Itga6	chr2	protein_coding	integrin alpha 6
known_NIR_11542	chr2	71679850;71684007	71683878;71686198	+	71679850	71686198	cassetteExon	ENSMUST00000112101.8	known	0.60	1.5	1	0;3	1	n	1.00	1.0	0	1;1	0	n	0.66	9.5	5	8;11	5	y	0.20	0.5	2	0;1	2	n	0.85	5.5	1	8;3	1	n	0.50	1.0	1	0;2	1	n	0.30	3.5	8	3;4	8	y	0.50	4.0	4	2;6	4	y	0.50	1.0	1	1;1	1	n	0.33	1.5	3	2;1	3	n	0.00	0.0	1	0;0	1	n	1.00	3.0	0	2;4	0	n	ENSMUSG00000027111.17	Itga6	chr2	protein_coding	integrin alpha 6
known_NIR_11543	chr2	71703909	71710383	+	71703909;71705891	71705750;71710383	ES	ENSMUST00000006669.6	known	0.00	0	25.0	0	29;21	n	0.00	0	17.5	0	16;19	n	0.00	0	50.5	0	60;41	n	0.00	0	47.0	0	44;50	n	0.04	2	43.0	2	47;39	y	0.00	0	14.5	0	17;12	n	0.00	0	54.0	0	53;55	n	0.00	0	16.5	0	18;15	n	0.00	0	40.5	0	32;49	n	0.00	0	78.5	0	76;81	n	0.00	0	45.5	0	51;40	n	0.00	0	44.5	0	40;49	n	ENSMUSG00000006494.12	Pdk1	chr2	protein_coding	pyruvate dehydrogenase kinase, isoenzyme 1
known_NIR_11544	chr2	71703909	71710383	+	71705891	71710383	A5SS	ENSMUST00000148249.8	known	0.00	0	21	0	21	n	0.00	0	19	0	19	n	0.00	0	41	0	41	n	0.00	0	50	0	50	n	0.05	2	39	2	39	y	0.00	0	12	0	12	n	0.00	0	55	0	55	n	0.00	0	15	0	15	n	0.00	0	49	0	49	n	0.00	0	81	0	81	n	0.00	0	40	0	40	n	0.00	0	49	0	49	n	ENSMUSG00000006494.12	Pdk1	chr2	protein_coding	pyruvate dehydrogenase kinase, isoenzyme 1
known_NIR_11545	chr2	71726143	71726762	+	71726143	71727991	A3SS	ENSMUST00000006669.6	known	0.00	0	54	0	54	n	0.00	0	44	0	44	n	0.01	1	80	1	80	n	0.00	0	58	0	58	n	0.00	0	74	0	74	n	0.00	0	31	0	31	n	0.00	0	89	0	89	n	0.00	0	28	0	28	n	0.02	1	62	1	62	n	0.01	2	161	2	161	y	0.00	0	75	0	75	n	0.00	0	54	0	54	n	ENSMUSG00000006494.12	Pdk1	chr2	protein_coding	pyruvate dehydrogenase kinase, isoenzyme 1
known_NIR_11546	chr2	72073136	72086593	+	72073136;72083338	72083284;72086593	ES	ENSMUST00000090826.12	known	0.00	0	265.0	0	236;294	n	0.00	1	282.5	1	242;323	n	0.00	1	277.0	1	264;290	n	0.00	1	314.5	1	294;335	n	0.00	1	340.0	1	309;371	n	0.00	0	149.0	0	127;171	n	0.00	0	372.0	0	353;391	n	0.00	0	145.5	0	131;160	n	0.01	2	298.5	2	274;323	y	0.00	0	364.0	0	355;373	n	0.01	4	401.5	4	355;448	y	0.00	0	410.5	0	392;429	n	ENSMUSG00000049044.17	Rapgef4	chr2	protein_coding	Rap guanine nucleotide exchange factor (GEF) 4
known_NIR_11547	chr2	72228769	72232333	+	72228769	72240493	A3SS	ENSMUST00000090824.12	known	0.40	2	3	2	3	n	0.50	1	1	1	1	n	0.50	2	2	2	2	n	0.22	4	14	4	14	y	0.29	2	5	2	5	n	0.40	2	3	2	3	n	0.63	19	11	19	11	y	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.23	3	10	3	10	y	0.33	2	4	2	4	n	0.33	4	8	4	8	y	ENSMUSG00000004085.15	Map3k20	chr2	protein_coding	mitogen-activated protein kinase kinase kinase 20
known_NIR_11548	chr2	72817976	72818712	+	72817976	72818716	A3SS	ENSMUST00000123087.8	known	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.12	1	7	1	7	n	0.00	0	3	0	3	n	0.11	2	17	2	17	y	0.00	0	5	0	5	n	0.25	2	6	2	6	n	0.17	2	10	2	10	y	0.30	3	7	3	7	y	0.10	1	9	1	9	n	ENSMUSG00000063714.16	Sp3os	chr2	lncRNA	trans-acting transcription factor 3, opposite strand
known_NIR_11549	chr2	72967999	72972242	-	72930558	72972242	A3SS	ENSMUST00000028517.13	known	0.11	10	77	10	77	y	0.12	9	68	9	68	y	0.03	3	85	3	85	y	0.08	9	100	9	100	y	0.07	8	109	8	109	y	0.12	5	36	5	36	y	0.10	12	105	12	105	y	0.06	3	46	3	46	y	0.10	9	80	9	80	y	0.06	9	131	9	131	y	0.12	15	105	15	105	y	0.13	13	90	13	90	y	ENSMUSG00000027108.16	Ola1	chr2	protein_coding	Obg-like ATPase 1
known_NIR_11550	chr2	73143057	73145781	+	73143057	73145776	A3SS	ENSMUST00000090811.11	known	0.07	2	26	2	26	y	0.00	0	27	0	27	n	0.07	2	27	2	27	y	0.04	2	43	2	43	y	0.00	0	46	0	46	n	0.13	2	13	2	13	y	0.13	4	27	4	27	y	0.00	0	25	0	25	n	0.08	3	35	3	35	y	0.05	2	38	2	38	y	0.06	2	31	2	31	y	0.00	0	52	0	52	n	ENSMUSG00000008226.15	Scrn3	chr2	protein_coding	secernin 3
known_NIR_11551	chr2	73145936	73149647	+	73145936;73148771	73148590;73149647	ES	ENSMUST00000090811.11	known	0.05	4	82.0	4	78;86	y	0.00	0	57.5	0	58;57	n	0.04	3	69.0	3	59;79	y	0.00	0	114.5	0	114;115	n	0.01	1	122.0	1	108;136	n	0.00	0	43.5	0	41;46	n	0.01	1	121.5	1	114;129	n	0.00	0	57.0	0	55;59	n	0.01	1	74.0	1	75;73	n	0.02	2	117.5	2	112;123	y	0.01	1	82.0	1	79;85	n	0.00	0	117.0	0	104;130	n	ENSMUSG00000008226.15	Scrn3	chr2	protein_coding	secernin 3
known_NIR_11552	chr2	73178103	73178481	-	73174101	73178481	A3SS	ENSMUST00000076463.12	known	0.13	10	66	10	66	y	0.28	15	38	15	38	y	0.19	57	239	57	239	y	0.08	9	102	9	102	y	0.22	20	69	20	69	y	0.25	36	108	36	108	y	0.32	23	48	23	48	y	0.24	23	74	23	74	y	0.16	11	58	11	58	y	0.13	12	81	12	81	y	0.17	9	45	9	45	y	0.15	15	87	15	87	y	ENSMUSG00000041762.17	Gpr155	chr2	protein_coding	G protein-coupled receptor 155
known_NIR_11553	chr2	73181428	73182193	-	73180035	73182193	A3SS	ENSMUST00000076463.12	known	0.00	0	64	0	64	n	0.00	0	40	0	40	n	0.00	0	206	0	206	n	0.03	2	65	2	65	y	0.00	0	64	0	64	n	0.01	1	114	1	114	n	0.02	1	59	1	59	n	0.00	0	93	0	93	n	0.00	0	38	0	38	n	0.00	0	52	0	52	n	0.00	0	44	0	44	n	0.00	0	78	0	78	n	ENSMUSG00000041762.17	Gpr155	chr2	protein_coding	G protein-coupled receptor 155
known_NIR_11554	chr2	73213302;73214536	73214412;73216609	-	73213302	73216609	cassetteExon	ENSMUST00000076463.12	known	0.24	4.5	14	7;2	14	y	0.25	1.0	3	0;2	3	n	0.23	26.0	86	33;19	86	y	0.06	3.5	52	4;3	52	y	0.08	3.0	36	1;5	36	n	0.23	10.5	36	14;7	36	y	0.12	3.5	26	4;3	26	y	0.21	10.5	40	10;11	40	y	0.12	1.5	11	1;2	11	n	0.09	3.0	31	4;2	31	y	0.13	1.5	10	3;0	10	n	0.33	8.0	16	6;10	16	y	ENSMUSG00000041762.17	Gpr155	chr2	protein_coding	G protein-coupled receptor 155
known_NIR_11555	chr2	73415351	73419208	+	73415549	73419208	A5SS	ENSMUST00000125413.2	known	1.00	22	0	22	0	n	0.83	19	4	19	4	y	0.67	6	3	6	3	n	1.00	22	0	22	0	n	0.93	27	2	27	2	y	0.75	9	3	9	3	y	0.95	18	1	18	1	n	0.75	12	4	12	4	y	1.00	18	0	18	0	n	0.93	27	2	27	2	y	0.84	21	4	21	4	y	0.93	13	1	13	1	n	ENSMUSG00000086382.2	Chrna1os	chr2	lncRNA	cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle), opposite strand
known_NIR_11556	chr2	73649492;73653650	73653545;73658816	-	73649492	73658816	cassetteExon	ENSMUST00000124737.8	known	0.90	37.5	4	29;46	4	y	1.00	23.0	0	24;22	0	n	0.99	84.0	1	89;79	1	n	0.88	49.0	7	43;55	7	y	0.93	56.5	4	55;58	4	y	1.00	36.5	0	34;39	0	n	0.90	36.5	4	37;36	4	y	0.95	37.0	2	37;37	2	y	0.84	31.0	6	32;30	6	y	0.87	45.0	7	35;55	7	y	0.89	41.0	5	44;38	5	y	0.85	39.0	7	45;33	7	y	ENSMUSG00000027104.19	Atf2	chr2	protein_coding	activating transcription factor 2
known_NIR_11557	chr2	73672790	73676541	-	73672790	73675783	5pMXE	ENSMUST00000124737.8	known	0.00	0	34	0	34	n	0.00	0	18	0	18	n	0.02	1	49	1	49	n	0.05	2	35	2	35	y	0.00	0	33	0	33	n	0.00	0	27	0	27	n	0.00	0	41	0	41	n	0.00	0	27	0	27	n	0.00	0	20	0	20	n	0.00	0	40	0	40	n	0.00	0	27	0	27	n	0.00	0	40	0	40	n	ENSMUSG00000027104.19	Atf2	chr2	protein_coding	activating transcription factor 2
known_NIR_11558	chr2	73672790	73676541	-	73672790;73675897	73675783;73676541	ES	ENSMUST00000112010.9	known	0.00	0	42.5	0	34;51	n	0.00	0	16.0	0	18;14	n	0.02	1	58.0	1	49;67	n	0.05	2	37.5	2	35;40	y	0.00	0	36.5	0	33;40	n	0.00	0	30.0	0	27;33	n	0.00	0	40.5	0	41;40	n	0.00	0	26.5	0	27;26	n	0.00	0	27.0	0	20;34	n	0.00	0	38.0	0	40;36	n	0.00	0	30.0	0	27;33	n	0.00	0	38.5	0	40;37	n	ENSMUSG00000027104.19	Atf2	chr2	protein_coding	activating transcription factor 2
known_NIR_11559	chr2	73672790	73676541	-	73675897	73676541	3pMXE	ENSMUST00000141050.8	known	0.00	0	51	0	51	n	0.00	0	14	0	14	n	0.01	1	67	1	67	n	0.05	2	40	2	40	y	0.00	0	40	0	40	n	0.00	0	33	0	33	n	0.00	0	40	0	40	n	0.00	0	26	0	26	n	0.00	0	34	0	34	n	0.00	0	36	0	36	n	0.00	0	33	0	33	n	0.00	0	37	0	37	n	ENSMUSG00000027104.19	Atf2	chr2	protein_coding	activating transcription factor 2
known_NIR_11560	chr2	73672790	73680933	-	73672790	73675783	5pMXE	ENSMUST00000124737.8	known	0.08	3	34	3	34	y	0.00	0	18	0	18	n	0.22	14	49	14	49	y	0.17	7	35	7	35	y	0.08	3	33	3	33	y	0.10	3	27	3	27	y	0.02	1	41	1	41	n	0.04	1	27	1	27	n	0.17	4	20	4	20	y	0.05	2	40	2	40	y	0.04	1	27	1	27	n	0.05	2	40	2	40	y	ENSMUSG00000027104.19	Atf2	chr2	protein_coding	activating transcription factor 2
known_NIR_11561	chr2	73672790	73680933	-	73676719	73680933	3pMXE	ENSMUST00000129555.2	known	0.12	3	23	3	23	y	0.00	0	11	0	11	n	0.15	14	77	14	77	y	0.16	7	37	7	37	y	0.05	3	61	3	61	y	0.09	3	29	3	29	y	0.03	1	34	1	34	n	0.05	1	20	1	20	n	0.14	4	24	4	24	y	0.04	2	51	2	51	y	0.03	1	28	1	28	n	0.05	2	39	2	39	y	ENSMUSG00000027104.19	Atf2	chr2	protein_coding	activating transcription factor 2
known_NIR_11562	chr2	73672790;73676719	73676541;73680933	-	73672790	73680933	cassetteExon	ENSMUST00000112016.9	known	0.79	11.5	3	0;23	3	n	1.00	5.5	0	0;11	0	n	0.74	39.0	14	1;77	14	n	0.74	19.5	7	2;37	7	y	0.91	30.5	3	0;61	3	n	0.83	14.5	3	0;29	3	n	0.94	17.0	1	0;34	1	n	0.91	10.0	1	0;20	1	n	0.75	12.0	4	0;24	4	n	0.93	25.5	2	0;51	2	n	0.93	14.0	1	0;28	1	n	0.91	19.5	2	0;39	2	n	ENSMUSG00000027104.19	Atf2	chr2	protein_coding	activating transcription factor 2
known_NIR_11563	chr2	73681326;73684235	73684139;73693513	-	73681326	73693513	cassetteExon	ENSMUST00000112010.9	known	0.60	13.5	9	11;16	9	y	0.76	13.0	4	19;7	4	y	0.74	39.5	14	40;39	14	y	0.74	25.0	9	11;39	9	y	0.72	29.0	11	33;25	11	y	0.68	21.0	10	23;19	10	y	0.59	22.0	15	18;26	15	y	0.69	15.5	7	13;18	7	y	0.69	13.5	6	15;12	6	y	0.64	27.0	15	28;26	15	y	0.52	11.0	10	10;12	10	y	0.51	23.0	22	24;22	22	y	ENSMUSG00000027104.19	Atf2	chr2	protein_coding	activating transcription factor 2
known_NIR_11564	chr2	73693582;73701029	73700967;73704014	-	73693582	73704014	cassetteExon	ENSMUST00000112010.9	known	0.23	5.0	17	6;4	17	y	0.07	1.0	13	0;2	13	n	0.13	5.5	37	8;3	37	y	0.15	7.0	41	7;7	41	y	0.14	4.0	24	4;4	24	y	0.08	1.5	18	2;1	18	n	0.21	10.0	38	8;12	38	y	0.28	7.5	19	8;7	19	y	0.12	3.0	21	3;3	21	y	0.07	2.5	35	2;3	35	y	0.21	5.0	19	5;5	19	y	0.16	6.5	34	6;7	34	y	ENSMUSG00000027104.19	Atf2	chr2	protein_coding	activating transcription factor 2
known_NIR_11565	chr2	73704089	73722819	-	73704089;73710725	73710629;73722819	ES	ENSMUST00000112010.9	known	0.00	0	18.5	0	18;19	n	0.00	0	16.5	0	15;18	n	0.02	1	40.5	1	38;43	n	0.07	2	28.0	2	30;26	y	0.08	3	35.5	3	32;39	y	0.10	2	19.0	2	17;21	y	0.07	2	28.0	2	31;25	y	0.00	0	25.0	0	29;21	n	0.05	1	19.0	1	23;15	n	0.00	0	36.0	0	43;29	n	0.04	1	22.5	1	25;20	n	0.04	1	23.0	1	27;19	n	ENSMUSG00000027104.19	Atf2	chr2	protein_coding	activating transcription factor 2
known_NIR_11566	chr2	73704089;73710723	73710629;73722819	-	73704089	73722819	cassetteExon	ENSMUST00000090802.11	known	1.00	9.0	0	18;0	0	n	1.00	7.5	0	15;0	0	n	0.95	20.0	1	38;2	1	n	0.88	15.0	2	30;0	2	n	0.85	17.0	3	32;2	3	y	0.83	10.0	2	17;3	2	y	0.89	15.5	2	31;0	2	n	1.00	15.5	0	29;2	0	n	0.92	11.5	1	23;0	1	n	1.00	22.0	0	43;1	0	n	0.93	12.5	1	25;0	1	n	0.94	14.5	1	27;2	1	n	ENSMUSG00000027104.19	Atf2	chr2	protein_coding	activating transcription factor 2
known_NIR_11567	chr2	73710723	73722819	-	73710725	73722819	A3SS	ENSMUST00000112010.9	known	0.00	0	19	0	19	n	0.00	0	18	0	18	n	0.04	2	43	2	43	y	0.00	0	26	0	26	n	0.05	2	39	2	39	y	0.12	3	21	3	21	y	0.00	0	25	0	25	n	0.09	2	21	2	21	y	0.00	0	15	0	15	n	0.03	1	29	1	29	n	0.00	0	20	0	20	n	0.10	2	19	2	19	y	ENSMUSG00000027104.19	Atf2	chr2	protein_coding	activating transcription factor 2
known_NIR_11568	chr2	73741404	73741596	-	73741404	73741586	A5SS	ENSMUST00000111996.8	known	0.74	541	193	541	193	y	0.75	538	177	538	177	y	0.71	540	224	540	224	y	0.74	655	225	655	225	y	0.73	585	221	585	221	y	0.76	355	113	355	113	y	0.71	721	295	721	295	y	0.72	304	120	304	120	y	0.72	541	212	541	212	y	0.74	867	306	867	306	y	0.75	698	229	698	229	y	0.73	763	286	763	286	y	ENSMUSG00000018770.10	Atp5g3	chr2	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)
known_NIR_11569	chr2	74352641	74359975	-	74352641;74358518	74358436;74359975	ES	ENSMUST00000111993.9	known	0.67	6	3.0	6	2;4	y	0.75	6	2.0	6	2;2	y	0.80	12	3.0	12	4;2	y	0.52	6	5.5	6	5;6	y	0.69	11	5.0	11	3;7	y	0.70	7	3.0	7	1;5	n	0.78	9	2.5	9	3;2	y	0.69	10	4.5	10	7;2	y	0.62	4	2.5	4	3;2	n	0.70	7	3.0	7	4;2	y	0.67	8	4.0	8	4;4	y	0.63	12	7.0	12	9;5	y	ENSMUSG00000009207.16	Lnpk	chr2	protein_coding	lunapark, ER junction formation factor
known_NIR_11570	chr2	74381445	74399285	-	74381445;74385390	74385332;74399285	ES	ENSMUST00000111993.9	known	0.20	1	4.0	1	5;3	n	0.00	0	6.5	0	7;6	n	0.00	0	12.0	0	12;12	n	0.00	0	11.0	0	12;10	n	0.00	0	11.5	0	8;15	n	0.00	0	3.5	0	5;2	n	0.00	0	25.5	0	23;28	n	0.00	0	7.0	0	7;7	n	0.00	0	5.0	0	4;6	n	0.30	3	7.0	3	2;12	y	0.00	0	5.0	0	4;6	n	0.14	1	6.0	1	8;4	n	ENSMUSG00000009207.16	Lnpk	chr2	protein_coding	lunapark, ER junction formation factor
known_NIR_11571	chr2	74381445	74399285	-	74385390	74399285	3pMXE	ENSMUST00000154706.8	known	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	2	0	2	n	0.00	0	28	0	28	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.20	3	12	3	12	y	0.00	0	6	0	6	n	0.20	1	4	1	4	n	ENSMUSG00000009207.16	Lnpk	chr2	protein_coding	lunapark, ER junction formation factor
known_NIR_11572	chr2	75489667	75491810	+	75489733	75491810	A5SS	ENSMUST00000111964.8	known	0.56	106	82	106	82	y	0.62	113	69	113	69	y	0.73	251	93	251	93	y	0.65	178	96	178	96	y	0.59	187	132	187	132	y	0.69	100	45	100	45	y	0.59	145	99	145	99	y	0.66	128	65	128	65	y	0.65	129	70	129	70	y	0.57	145	109	145	109	y	0.58	123	89	123	89	y	0.57	171	128	171	128	y	ENSMUSG00000059005.14	Hnrnpa3	chr2	protein_coding	heterogeneous nuclear ribonucleoprotein A3
known_NIR_11573	chr2	75522716	75534708	-	75509773	75534708	A3SS	ENSMUST00000102672.5	known	0.09	7	69	7	69	y	0.07	3	40	3	40	y	0.10	8	69	8	69	y	0.05	6	118	6	118	y	0.11	10	85	10	85	y	0.12	5	38	5	38	y	0.09	8	80	8	80	y	0.09	4	39	4	39	y	0.11	9	73	9	73	y	0.06	9	131	9	131	y	0.03	2	61	2	61	y	0.10	9	78	9	78	y	ENSMUSG00000015839.7	Nfe2l2	chr2	protein_coding	nuclear factor, erythroid derived 2, like 2
known_NIR_11574	chr2	76496154;76497786	76497671;76502041	-	76496154	76502041	cassetteExon	ENSMUST00000002809.14	known	0.54	7.0	6	10;4	6	y	0.29	4.0	10	5;3	10	y	0.05	1.0	20	2;0	20	n	0.27	3.0	8	4;2	8	y	0.12	2.5	18	3;2	18	y	0.00	0.0	4	0;0	4	n	0.03	0.5	18	0;1	18	n	0.00	0.0	15	0;0	15	n	0.18	2.0	9	3;1	9	n	0.12	1.0	7	0;2	7	n	0.25	4.0	12	5;3	12	y	0.22	4.0	14	5;3	14	y	ENSMUSG00000002732.15	Fkbp7	chr2	protein_coding	FK506 binding protein 7
known_NIR_11575	chr2	76905352	76938707	-	76905352;76919608	76919414;76938707	ES	ENSMUST00000049544.14	known	0.00	0	3.0	0	5;1	n	0.00	0	10.5	0	14;7	n	0.00	0	4.5	0	4;5	n	0.00	0	3.5	0	4;3	n	0.27	4	11.0	4	10;12	y	0.00	0	2.5	0	2;3	n	0.22	1	3.5	1	4;3	n	0.00	0	4.5	0	4;5	n	0.00	0	4.0	0	5;3	n	0.20	2	8.0	2	8;8	y	0.00	0	5.5	0	3;8	n	0.12	1	7.5	1	7;8	n	ENSMUSG00000044033.17	Ccdc141	chr2	protein_coding	coiled-coil domain containing 141
known_NIR_11576	chr2	76992640	76998855	-	76962717	76998855	A3SS	ENSMUST00000049544.14	known	0.33	3	6	3	6	n	0.60	3	2	3	2	n	0.25	1	3	1	3	n	0.38	3	5	3	5	n	0.40	4	6	4	6	y	0.71	5	2	5	2	n	0.75	6	2	6	2	n	0.17	2	10	2	10	y	0.53	8	7	8	7	y	0.53	9	8	9	8	y	1.00	7	0	7	0	n	0.57	4	3	4	3	n	ENSMUSG00000044033.17	Ccdc141	chr2	protein_coding	coiled-coil domain containing 141
known_NIR_11577	chr2	77246319	77307079	-	77246319;77280657	77280495;77307079	ES	ENSMUST00000111830.9	known	0.34	9	17.5	9	15;20	y	0.38	9	14.5	9	17;12	y	0.12	1	7.0	1	8;6	n	0.32	14	29.5	14	26;33	y	0.19	3	13.0	3	15;11	y	0.46	3	3.5	3	3;4	y	0.37	10	17.0	10	13;21	y	0.45	5	6.0	5	10;2	y	0.36	11	19.5	11	20;19	y	0.37	17	29.0	17	32;26	y	0.26	7	20.0	7	22;18	y	0.24	9	28.5	9	27;30	y	ENSMUSG00000027016.18	Zfp385b	chr2	protein_coding	zinc finger protein 385B
known_NIR_11578	chr2	77246319	77307079	-	77280657	77307079	3pMXE	ENSMUST00000135756.8	known	0.31	9	20	9	20	y	0.43	9	12	9	12	y	0.14	1	6	1	6	n	0.30	14	33	14	33	y	0.21	3	11	3	11	y	0.43	3	4	3	4	n	0.32	10	21	10	21	y	0.71	5	2	5	2	n	0.37	11	19	11	19	y	0.40	17	26	17	26	y	0.28	7	18	7	18	y	0.23	9	30	9	30	y	ENSMUSG00000027016.18	Zfp385b	chr2	protein_coding	zinc finger protein 385B
known_NIR_11579	chr2	77301487	77307079	-	77246319	77307079	A3SS	ENSMUST00000145251.8	known	0.31	4	9	4	9	y	0.18	2	9	2	9	y	0.00	0	1	0	1	n	0.22	4	14	4	14	y	0.67	6	3	6	3	n	0.25	1	3	1	3	n	0.17	2	10	2	10	y	0.00	0	5	0	5	n	0.39	7	11	7	11	y	0.23	5	17	5	17	y	0.30	3	7	3	7	y	0.18	2	9	2	9	y	ENSMUSG00000027016.18	Zfp385b	chr2	protein_coding	zinc finger protein 385B
known_NIR_11580	chr2	77301487	77307079	-	77280657	77307079	A3SS	ENSMUST00000111830.9	known	0.17	4	20	4	20	y	0.14	2	12	2	12	y	0.00	0	6	0	6	n	0.11	4	33	4	33	y	0.35	6	11	6	11	y	0.20	1	4	1	4	n	0.09	2	21	2	21	y	0.00	0	2	0	2	n	0.27	7	19	7	19	y	0.16	5	26	5	26	y	0.14	3	18	3	18	y	0.06	2	30	2	30	y	ENSMUSG00000027016.18	Zfp385b	chr2	protein_coding	zinc finger protein 385B
known_NIR_11581	chr2	77307189;77311709	77311671;77333884	-	77307189	77333884	cassetteExon	ENSMUST00000111830.9	known	0.08	2.5	28	2;3	28	y	0.16	4.0	21	4;4	21	y	0.00	0.0	7	0;0	7	n	0.14	5.5	34	6;5	34	y	0.18	5.0	23	7;3	23	y	0.00	0.0	3	0;0	3	n	0.18	4.5	21	3;6	21	y	0.17	1.0	5	2;0	5	n	0.19	7.0	30	6;8	30	y	0.21	9.0	33	8;10	33	y	0.16	3.5	18	2;5	18	y	0.07	3.0	39	3;3	39	y	ENSMUSG00000027016.18	Zfp385b	chr2	protein_coding	zinc finger protein 385B
known_NIR_11582	chr2	77726922	77734158	-	77726922	77734140	A5SS	ENSMUST00000111821.9	known	0.40	8	12	8	12	y	0.37	10	17	10	17	y	0.25	7	21	7	21	y	0.56	9	7	9	7	y	0.44	14	18	14	18	y	0.20	4	16	4	16	y	0.31	9	20	9	20	y	0.18	3	14	3	14	y	0.50	10	10	10	10	y	0.32	7	15	7	15	y	0.64	9	5	9	5	y	0.33	7	14	7	14	y	ENSMUSG00000027014.15	Cwc22	chr2	protein_coding	CWC22 spliceosome-associated protein
known_NIR_11583	chr2	77761318	77761779	-	77759842	77761779	A3SS	ENSMUST00000111824.8	known	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.07	2	27	2	27	y	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.00	0	16	0	16	n	ENSMUSG00000027014.15	Cwc22	chr2	protein_coding	CWC22 spliceosome-associated protein
known_NIR_11584	chr2	77763110	77766937	-	77763107	77766937	A3SS	ENSMUST00000111824.8	known	0.29	2	5	2	5	n	0.33	5	10	5	10	y	0.65	13	7	13	7	y	0.19	3	13	3	13	y	0.50	6	6	6	6	y	0.32	6	13	6	13	y	0.36	8	14	8	14	y	0.47	8	9	8	9	y	0.50	7	7	7	7	y	0.17	1	5	1	5	n	0.33	3	6	3	6	n	0.38	8	13	8	13	y	ENSMUSG00000027014.15	Cwc22	chr2	protein_coding	CWC22 spliceosome-associated protein
known_NIR_11585	chr2	77767066;77770706	77770646;77776494	-	77767066	77776494	cassetteExon	ENSMUST00000111824.8	known	0.00	0.0	1	0;0	1	n	0.60	1.5	1	2;1	1	n	0.85	5.5	1	8;3	1	n	0.54	3.5	3	7;0	3	n	0.71	7.5	3	11;4	3	y	0.50	1.0	1	1;1	1	n	0.33	3.5	7	5;2	7	y	0.18	1.5	7	2;1	7	n	1.00	4.0	0	6;2	0	n	0.43	1.5	2	3;0	2	n	0.33	1.5	3	3;0	3	n	0.44	8.0	10	12;4	10	y	ENSMUSG00000027014.15	Cwc22	chr2	protein_coding	CWC22 spliceosome-associated protein
known_NIR_11586	chr2	78699749	78700801	+	78698941	78700801	A5SS	ENSMUST00000124120.2	known	1.00	61	0	61	0	n	1.00	53	0	53	0	n	0.99	89	1	89	1	n	1.00	74	0	74	0	n	0.98	96	2	96	2	y	0.97	35	1	35	1	n	0.99	75	1	75	1	n	1.00	34	0	34	0	n	0.96	44	2	44	2	y	1.00	81	0	81	0	n	0.98	41	1	41	1	n	0.98	82	2	82	2	y	ENSMUSG00000027011.15	Ube2e3	chr2	protein_coding	ubiquitin-conjugating enzyme E2E 3
known_NIR_11587	chr2	78700362	78700801	+	78699749	78700801	A5SS	ENSMUST00000028398.14	known	0.00	0	61	0	61	n	0.00	0	53	0	53	n	0.00	0	89	0	89	n	0.00	0	74	0	74	n	0.03	3	96	3	96	y	0.00	0	35	0	35	n	0.00	0	75	0	75	n	0.03	1	34	1	34	n	0.06	3	44	3	44	y	0.00	0	81	0	81	n	0.05	2	41	2	41	y	0.02	2	82	2	82	y	ENSMUSG00000027011.15	Ube2e3	chr2	protein_coding	ubiquitin-conjugating enzyme E2E 3
known_NIR_11588	chr2	79173635	79191668	-	79173635	79185266	A5SS&ES	ENSMUST00000143602.8	known	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.06	2	29	2	29	y	0.00	0	6	0	6	n	0.00	0	27	0	27	n	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.06	2	29	2	29	y	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	ENSMUSG00000075256.10	Cerkl	chr2	protein_coding	ceramide kinase-like
known_NIR_11589	chr2	79173635	79191668	-	79173635;79185408	79185266;79191668	ES	ENSMUST00000099974.10	known	0.00	0	6.5	0	3;10	n	0.00	0	8.5	0	10;7	n	0.04	2	46.5	2	29;64	y	0.00	0	7.0	0	6;8	n	0.00	0	29.0	0	27;31	n	0.00	0	25.0	0	18;32	n	0.00	0	18.0	0	13;23	n	0.04	2	50.0	2	29;71	y	0.00	0	3.5	0	2;5	n	0.10	1	9.5	1	2;17	n	0.00	0	6.5	0	5;8	n	0.00	0	2.5	0	3;2	n	ENSMUSG00000075256.10	Cerkl	chr2	protein_coding	ceramide kinase-like
known_NIR_11590	chr2	79173635	79191668	-	79185408	79191668	3pMXE	ENSMUST00000130499.2	known	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.03	2	64	2	64	y	0.00	0	8	0	8	n	0.00	0	31	0	31	n	0.00	0	32	0	32	n	0.00	0	23	0	23	n	0.03	2	71	2	71	y	0.00	0	5	0	5	n	0.06	1	17	1	17	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	ENSMUSG00000075256.10	Cerkl	chr2	protein_coding	ceramide kinase-like
known_NIR_11591	chr2	79491348	79492653	+	79491348;79492048	79491983;79492653	ES	ENSMUST00000111785.9	known	0.00	0	42.0	0	44;40	n	0.02	1	62.0	1	64;60	n	0.00	0	66.0	0	69;63	n	0.00	0	55.5	0	63;48	n	0.01	1	80.0	1	88;72	n	0.00	0	34.5	0	32;37	n	0.03	2	75.0	2	78;72	y	0.00	0	42.5	0	41;44	n	0.00	0	32.5	0	38;27	n	0.05	3	61.5	3	67;56	y	0.00	0	65.0	0	66;64	n	0.00	0	57.5	0	70;45	n	ENSMUSG00000027007.17	Itprid2	chr2	protein_coding	ITPR interacting domain containing 2
known_NIR_11592	chr2	80447628	80451538	+	80447950	80451538	A5SS	ENSMUST00000028384.5	known	0.28	7	18	7	18	y	0.33	6	12	6	12	y	0.29	6	15	6	15	y	0.36	10	18	10	18	y	0.28	10	26	10	26	y	0.44	7	9	7	9	y	0.33	13	26	13	26	y	0.50	10	10	10	10	y	0.27	6	16	6	16	y	0.30	11	26	11	26	y	0.39	12	19	12	19	y	0.46	16	19	16	19	y	ENSMUSG00000027001.11	Dusp19	chr2	protein_coding	dual specificity phosphatase 19
known_NIR_11593	chr2	80451584	80454670	+	80451584	80454552	A3SS	ENSMUST00000028384.5	known	0.05	1	18	1	18	n	0.15	4	22	4	22	y	0.24	8	25	8	25	y	0.17	5	24	5	24	y	0.10	4	37	4	37	y	0.14	3	18	3	18	y	0.15	6	33	6	33	y	0.05	1	19	1	19	n	0.19	5	22	5	22	y	0.07	2	27	2	27	y	0.14	5	31	5	31	y	0.18	7	31	7	31	y	ENSMUSG00000027001.11	Dusp19	chr2	protein_coding	dual specificity phosphatase 19
known_NIR_11594	chr2	80452144	80454552	+	80451584	80454552	A5SS	ENSMUST00000028384.5	known	0.05	1	18	1	18	n	0.04	1	22	1	22	n	0.04	1	25	1	25	n	0.00	0	24	0	24	n	0.05	2	37	2	37	y	0.00	0	18	0	18	n	0.03	1	33	1	33	n	0.10	2	19	2	19	y	0.00	0	22	0	22	n	0.00	0	27	0	27	n	0.00	0	31	0	31	n	0.00	0	31	0	31	n	ENSMUSG00000027001.11	Dusp19	chr2	protein_coding	dual specificity phosphatase 19
known_NIR_11595	chr2	80453786	80454552	+	80451584	80454552	A5SS	ENSMUST00000028384.5	known	0.00	0	18	0	18	n	0.00	0	22	0	22	n	0.00	0	25	0	25	n	0.00	0	24	0	24	n	0.05	2	37	2	37	y	0.00	0	18	0	18	n	0.00	0	33	0	33	n	0.17	4	19	4	19	y	0.00	0	22	0	22	n	0.00	0	27	0	27	n	0.00	0	31	0	31	n	0.00	0	31	0	31	n	ENSMUSG00000027001.11	Dusp19	chr2	protein_coding	dual specificity phosphatase 19
known_NIR_11596	chr2	83488930	83490402	+	83488965	83490402	A5SS	ENSMUST00000081591.7	known	0.00	0	134	0	134	n	0.00	0	108	0	108	n	0.01	2	232	2	232	y	0.00	0	156	0	156	n	0.00	0	207	0	207	n	0.00	0	116	0	116	n	0.00	0	160	0	160	n	0.02	2	108	2	108	y	0.00	0	115	0	115	n	0.01	1	157	1	157	n	0.01	1	107	1	107	n	0.00	0	167	0	167	n	ENSMUSG00000027091.15	Zc3h15	chr2	protein_coding	zinc finger CCCH-type containing 15
known_NIR_11597	chr2	83555263	83566857	+	83555263	83566854	A3SS	ENSMUST00000125360.8	known	0.75	6	2	6	2	n	0.25	1	3	1	3	n	0.36	5	9	5	9	y	0.54	7	6	7	6	y	0.40	2	3	2	3	n	0.33	2	4	2	4	n	0.00	0	3	0	3	n	0.50	4	4	4	4	n	1.00	1	0	1	0	n	0.43	3	4	3	4	n	1.00	1	0	1	0	n	1.00	4	0	4	0	n	ENSMUSG00000027087.12	Itgav	chr2	protein_coding	integrin alpha V
known_NIR_11598	chr2	84207389	84255414	-	84207389;84237930	84237863;84255414	ES	ENSMUST00000074262.9	known	0.40	2	3.0	2	3;3	n	-	-	-	-	-	-	0.50	4	4.0	4	2;6	y	0.00	0	1.0	0	0;2	n	0.46	3	3.5	3	6;1	n	0.00	0	0.5	0	0;1	n	0.18	1	4.5	1	2;7	n	0.00	0	2.5	0	2;3	n	0.29	1	2.5	1	2;3	n	0.00	0	1.0	0	2;0	n	0.67	1	0.5	1	0;1	n	0.00	0	3.5	0	4;3	n	ENSMUSG00000059588.14	Calcrl	chr2	protein_coding	calcitonin receptor-like
known_NIR_11599	chr2	84273269	84274354	-	84264765	84274354	A3SS	ENSMUST00000111722.8	known	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.42	5	7	5	7	y	1.00	1	0	1	0	n	0.00	0	6	0	6	n	0.57	4	3	4	3	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.33	2	4	2	4	n	ENSMUSG00000027082.16	Tfpi	chr2	protein_coding	tissue factor pathway inhibitor
known_NIR_11600	chr2	84273656	84274354	-	84264765	84274354	A3SS	ENSMUST00000111722.8	known	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.36	4	7	4	7	y	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.43	3	4	3	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	ENSMUSG00000027082.16	Tfpi	chr2	protein_coding	tissue factor pathway inhibitor
known_NIR_11601	chr2	84433244	84433993	-	84433247	84433993	A3SS	ENSMUST00000111690.8	known	0.10	9	79	9	79	y	0.15	10	57	10	57	y	0.10	12	111	12	111	y	0.14	14	88	14	88	y	0.18	24	110	24	110	y	0.16	15	78	15	78	y	0.22	25	89	25	89	y	0.11	9	75	9	75	y	0.10	10	89	10	89	y	0.17	19	93	19	93	y	0.18	13	60	13	60	y	0.12	13	97	13	97	y	ENSMUSG00000034101.15	Ctnnd1	chr2	protein_coding	catenin (cadherin associated protein), delta 1
known_NIR_11602	chr2	84433244	84433993	-	84433618	84433993	A3SS&ES	ENSMUST00000111696.8	known	0.38	9	15	9	15	y	0.50	10	10	10	10	y	0.36	12	21	12	21	y	0.50	14	14	14	14	y	0.48	24	26	24	26	y	0.62	15	9	15	9	y	0.52	25	23	25	23	y	0.32	9	19	9	19	y	0.36	10	18	10	18	y	0.49	19	20	19	20	y	0.41	13	19	13	19	y	0.41	13	19	13	19	y	ENSMUSG00000034101.15	Ctnnd1	chr2	protein_coding	catenin (cadherin associated protein), delta 1
known_NIR_11603	chr2	84433247	84433993	-	84433247;84433618	84433532;84433993	ES	ENSMUST00000111696.8	known	0.88	79	11.0	79	7;15	y	0.87	57	8.5	57	7;10	y	0.86	111	17.5	111	14;21	y	0.87	88	13.0	88	12;14	y	0.83	110	22.5	110	19;26	y	0.90	78	8.5	78	8;9	y	0.84	89	16.5	89	10;23	y	0.84	75	14.5	75	10;19	y	0.87	89	13.0	89	8;18	y	0.85	93	16.0	93	12;20	y	0.83	60	12.5	60	6;19	y	0.86	97	16.0	97	13;19	y	ENSMUSG00000034101.15	Ctnnd1	chr2	protein_coding	catenin (cadherin associated protein), delta 1
known_NIR_11604	chr2	84434096;84435590	84435528;84438673	-	84434096	84438673	cassetteExon	ENSMUST00000111696.8	known	0.73	99.0	36	90;108	36	y	0.73	85.0	31	92;78	31	y	0.71	148.0	60	156;140	60	y	0.76	109.0	34	105;113	34	y	0.65	157.0	83	149;165	83	y	0.77	96.5	29	95;98	29	y	0.63	120.0	71	126;114	71	y	0.63	78.0	45	83;73	45	y	0.75	100.0	33	107;93	33	y	0.74	134.5	47	147;122	47	y	0.72	75.5	30	78;73	30	y	0.69	118.0	52	122;114	52	y	ENSMUSG00000034101.15	Ctnnd1	chr2	protein_coding	catenin (cadherin associated protein), delta 1
known_NIR_11605	chr2	84442436	84443280	-	84442436	84442876	5pMXE	ENSMUST00000131926.2	known	0.90	60	7	60	7	y	0.96	26	1	26	1	n	0.90	95	11	95	11	y	0.93	75	6	75	6	y	0.98	119	3	119	3	y	0.94	48	3	48	3	y	0.94	63	4	63	4	y	0.97	75	2	75	2	y	0.98	47	1	47	1	n	0.95	82	4	82	4	y	0.97	56	2	56	2	y	0.95	71	4	71	4	y	ENSMUSG00000034101.15	Ctnnd1	chr2	protein_coding	catenin (cadherin associated protein), delta 1
known_NIR_11606	chr2	84442436;84442893	84442876;84443280	-	84442436	84443280	cassetteExon	ENSMUST00000111696.8	known	0.10	6.5	60	7;6	60	y	0.02	0.5	26	1;0	26	n	0.10	10.0	95	11;9	95	y	0.06	5.0	75	6;4	75	y	0.02	3.0	119	3;3	119	y	0.07	3.5	48	3;4	48	y	0.06	4.0	63	4;4	63	y	0.03	2.5	75	2;3	75	y	0.02	1.0	47	1;1	47	n	0.06	5.0	82	4;6	82	y	0.03	2.0	56	2;2	56	y	0.03	2.5	71	4;1	71	n	ENSMUSG00000034101.15	Ctnnd1	chr2	protein_coding	catenin (cadherin associated protein), delta 1
known_NIR_11607	chr2	84452426	84480750	-	84452426	84454614	A5SS&ES	ENSMUST00000111696.8	known	0.65	24	13	24	13	y	0.65	15	8	15	8	y	0.21	12	45	12	45	y	0.51	36	34	36	34	y	0.39	41	65	41	65	y	0.29	13	32	13	32	y	0.33	18	36	18	36	y	0.41	20	29	20	29	y	0.36	12	21	12	21	y	0.32	22	47	22	47	y	0.43	16	21	16	21	y	0.27	13	35	13	35	y	ENSMUSG00000034101.15	Ctnnd1	chr2	protein_coding	catenin (cadherin associated protein), delta 1
known_NIR_11608	chr2	84452426;84454902	84454614;84480750	-	84452426	84480750	cassetteExon	ENSMUST00000111678.8	known	0.36	13.5	24	13;14	24	y	0.36	8.5	15	8;9	15	y	0.79	45.5	12	45;46	12	y	0.49	34.0	36	34;34	36	y	0.57	53.5	41	65;42	41	y	0.68	28.0	13	32;24	13	y	0.62	29.0	18	36;22	18	y	0.59	28.5	20	29;28	20	y	0.62	20.0	12	21;19	12	y	0.65	40.5	22	47;34	22	y	0.54	18.5	16	21;16	16	y	0.72	33.5	13	35;32	13	y	ENSMUSG00000034101.15	Ctnnd1	chr2	protein_coding	catenin (cadherin associated protein), delta 1
known_NIR_11609	chr2	84454902	84480750	-	84456481	84480750	A3SS&ES	ENSMUST00000111686.8	known	1.00	14	0	14	0	n	1.00	9	0	9	0	n	0.96	46	2	46	2	y	1.00	34	0	34	0	n	1.00	42	0	42	0	n	1.00	24	0	24	0	n	1.00	22	0	22	0	n	0.97	28	1	28	1	n	1.00	19	0	19	0	n	1.00	34	0	34	0	n	0.94	16	1	16	1	n	1.00	32	0	32	0	n	ENSMUSG00000034101.15	Ctnnd1	chr2	protein_coding	catenin (cadherin associated protein), delta 1
known_NIR_11610	chr2	84456481	84480750	-	84452426	84480750	A3SS	ENSMUST00000111678.8	known	0.00	0	24	0	24	n	0.00	0	15	0	15	n	0.14	2	12	2	12	y	0.00	0	36	0	36	n	0.00	0	41	0	41	n	0.00	0	13	0	13	n	0.00	0	18	0	18	n	0.05	1	20	1	20	n	0.00	0	12	0	12	n	0.00	0	22	0	22	n	0.06	1	16	1	16	n	0.00	0	13	0	13	n	ENSMUSG00000034101.15	Ctnnd1	chr2	protein_coding	catenin (cadherin associated protein), delta 1
known_NIR_11611	chr2	84499741	84500356	-	84499741	84500331	A5SS	ENSMUST00000117299.10	known	0.28	13	34	13	34	y	0.26	11	32	11	32	y	0.33	8	16	8	16	y	0.18	8	37	8	37	y	0.26	7	20	7	20	y	0.25	4	12	4	12	y	0.09	4	43	4	43	y	0.36	8	14	8	14	y	0.28	10	26	10	26	y	0.19	13	57	13	57	y	0.22	7	25	7	25	y	0.07	3	37	3	37	y	ENSMUSG00000076437.12	Selenoh	chr2	protein_coding	selenoprotein H
known_NIR_11612	chr2	84505825;84506202	84506089;84506441	-	84505825	84506441	cassetteExon	ENSMUST00000111664.8	known	0.98	96.0	2	91;101	2	y	0.95	75.5	4	63;88	4	y	0.97	91.0	3	85;97	3	y	0.99	111.0	1	111;111	1	n	0.99	145.5	1	132;159	1	n	0.98	55.5	1	50;61	1	n	0.97	116.0	3	112;120	3	y	0.99	66.0	1	57;75	1	n	0.99	78.0	1	65;91	1	n	0.98	144.5	3	137;152	3	y	0.98	101.5	2	103;100	2	y	1.00	130.0	0	118;142	0	n	ENSMUSG00000050043.17	Tmx2	chr2	protein_coding	thioredoxin-related transmembrane protein 2
known_NIR_11613	chr2	84541816	84544822	-	84541816	84545327	A5SS	ENSMUST00000035840.6	known	0.00	0	21	0	21	n	0.00	0	13	0	13	n	0.00	0	38	0	38	n	0.05	2	40	2	40	y	0.00	0	63	0	63	n	0.00	0	28	0	28	n	0.03	1	28	1	28	n	0.00	0	32	0	32	n	0.00	0	30	0	30	n	0.05	2	41	2	41	y	0.00	0	26	0	26	n	0.03	1	37	1	37	n	ENSMUSG00000034075.11	Zdhhc5	chr2	protein_coding	zinc finger, DHHC domain containing 5
known_NIR_11614	chr2	84554561	84555873	-	84554561	84557507	A5SS	ENSMUST00000138231.2	known	1.00	40	0	40	0	n	0.94	30	2	30	2	y	0.97	112	3	112	3	y	1.00	38	0	38	0	n	0.93	69	5	69	5	y	0.97	38	1	38	1	n	1.00	47	0	47	0	n	0.95	35	2	35	2	y	0.95	35	2	35	2	y	1.00	66	0	66	0	n	1.00	44	0	44	0	n	0.93	56	4	56	4	y	ENSMUSG00000027079.16	Clp1	chr2	protein_coding	CLP1, cleavage and polyadenylation factor I subunit
known_NIR_11615	chr2	84554561	84557507	-	84554561;84556500	84555873;84557507	ES	ENSMUST00000165219.8	known	0.00	0	50.5	0	40;61	n	0.07	2	28.0	2	30;26	y	0.03	3	112.5	3	112;113	y	0.00	0	45.5	0	38;53	n	0.06	5	76.5	5	69;84	y	0.03	1	38.5	1	38;39	n	0.00	0	60.0	0	47;73	n	0.05	2	42.0	2	35;49	y	0.06	2	32.0	2	35;29	y	0.00	0	67.0	0	66;68	n	0.00	0	41.5	0	44;39	n	0.07	4	53.5	4	56;51	y	ENSMUSG00000027079.16	Clp1	chr2	protein_coding	CLP1, cleavage and polyadenylation factor I subunit
known_NIR_11616	chr2	84556500	84557507	-	84554561	84557507	A3SS	ENSMUST00000138231.2	known	1.00	61	0	61	0	n	0.93	26	2	26	2	y	0.97	113	3	113	3	y	1.00	53	0	53	0	n	0.94	84	5	84	5	y	0.97	39	1	39	1	n	1.00	73	0	73	0	n	0.96	49	2	49	2	y	0.94	29	2	29	2	y	1.00	68	0	68	0	n	1.00	39	0	39	0	n	0.93	51	4	51	4	y	ENSMUSG00000027079.16	Clp1	chr2	protein_coding	CLP1, cleavage and polyadenylation factor I subunit
known_NIR_11617	chr2	84596374	84600118	-	84597838	84600118	A3SS&ES	ENSMUST00000023994.10	known	0.00	0	4756	0	4756	n	0.00	0	5621	0	5621	n	0.00	0	5333	0	5333	n	0.00	0	5197	0	5197	n	0.00	5	6830	5	6830	y	0.00	0	3533	0	3533	n	0.00	0	6094	0	6094	n	0.00	0	4102	0	4102	n	0.00	2	4263	2	4263	y	0.00	0	6193	0	6193	n	0.00	2	4288	2	4288	y	0.00	0	5639	0	5639	n	ENSMUSG00000023224.13	Serping1	chr2	protein_coding	serine (or cysteine) peptidase inhibitor, clade G, member 1
known_NIR_11618	chr2	84605151	84605707	-	84605158	84605707	A3SS	ENSMUST00000023994.10	known	0.00	0	826	0	826	n	0.00	0	697	0	697	n	0.00	1	991	1	991	n	0.00	1	1176	1	1176	n	0.00	4	1526	4	1526	y	0.00	2	729	2	729	y	0.00	2	1054	2	1054	y	0.00	0	835	0	835	n	0.00	0	882	0	882	n	0.00	0	1301	0	1301	n	0.01	6	791	6	791	y	0.00	1	1200	1	1200	n	ENSMUSG00000023224.13	Serping1	chr2	protein_coding	serine (or cysteine) peptidase inhibitor, clade G, member 1
known_NIR_11619	chr2	84633218;84633864	84633772;84636681	+	84633218	84636681	cassetteExon	ENSMUST00000102642.9	known	0.01	2.5	295	3;2	295	y	0.01	2.0	297	4;0	297	n	0.00	2.0	440	1;3	440	n	0.01	2.5	292	2;3	292	y	0.01	2.5	442	4;1	442	n	0.01	2.0	248	2;2	248	y	0.01	4.0	413	4;4	413	y	0.01	3.0	236	0;6	236	n	0.01	2.5	234	3;2	234	y	0.00	0.0	432	0;0	432	n	0.01	2.5	298	2;3	298	y	0.01	3.0	387	5;1	387	n	ENSMUSG00000027078.15	Ube2l6	chr2	protein_coding	ubiquitin-conjugating enzyme E2L 6
known_NIR_11620	chr2	84669849	84671183	+	84670025	84671183	A5SS	ENSMUST00000121114.8	known	0.00	0	2	0	2	n	0.40	2	3	2	3	n	0.51	20	19	20	19	y	0.73	8	3	8	3	y	0.50	8	8	8	8	y	0.64	7	4	7	4	y	0.62	5	3	5	3	n	0.30	3	7	3	7	y	0.42	5	7	5	7	y	0.67	2	1	2	1	n	0.67	2	1	2	1	n	0.18	2	9	2	9	y	ENSMUSG00000027075.17	Slc43a1	chr2	protein_coding	solute carrier family 43, member 1
known_NIR_11621	chr2	84767193	84767867	+	84766988	84767867	A5SS	ENSMUST00000130278.2	known	1.00	6	0	6	0	n	-	-	-	-	-	-	0.91	29	3	29	3	y	0.90	9	1	9	1	n	0.93	13	1	13	1	n	0.95	18	1	18	1	n	0.86	12	2	12	2	y	1.00	4	0	4	0	n	0.67	4	2	4	2	n	0.83	5	1	5	1	n	1.00	4	0	4	0	n	0.86	6	1	6	1	n	ENSMUSG00000027074.15	Slc43a3	chr2	protein_coding	solute carrier family 43, member 3
known_NIR_11622	chr2	84767193	84767867	+	84767193	84767906	A3SS	ENSMUST00000141650.8	known	0.67	6	3	6	3	n	0.00	0	1	0	1	n	0.88	29	4	29	4	y	0.75	9	3	9	3	y	1.00	13	0	13	0	n	0.82	18	4	18	4	y	0.86	12	2	12	2	y	0.67	4	2	4	2	n	1.00	4	0	4	0	n	0.71	5	2	5	2	n	1.00	4	0	4	0	n	0.60	6	4	6	4	y	ENSMUSG00000027074.15	Slc43a3	chr2	protein_coding	solute carrier family 43, member 3
known_NIR_11623	chr2	84867874	84868138	+	84867672	84868138	A5SS	ENSMUST00000077798.13	known	0.04	1	26	1	26	n	0.00	0	17	0	17	n	0.00	0	48	0	48	n	0.08	2	23	2	23	y	0.00	0	35	0	35	n	0.00	0	17	0	17	n	0.00	0	41	0	41	n	0.00	0	16	0	16	n	0.04	1	23	1	23	n	0.05	2	39	2	39	y	0.09	2	21	2	21	y	0.00	0	20	0	20	n	ENSMUSG00000027067.17	Ssrp1	chr2	protein_coding	structure specific recognition protein 1
known_NIR_11624	chr2	84868882	84869574	+	84868882	84870218	A3SS	ENSMUST00000077798.13	known	0.00	0	73	0	73	n	0.00	0	64	0	64	n	0.02	2	109	2	109	y	0.00	0	96	0	96	n	0.02	3	119	3	119	y	0.00	0	54	0	54	n	0.00	0	99	0	99	n	0.00	0	57	0	57	n	0.00	0	70	0	70	n	0.00	0	115	0	115	n	0.00	0	65	0	65	n	0.00	0	120	0	120	n	ENSMUSG00000027067.17	Ssrp1	chr2	protein_coding	structure specific recognition protein 1
known_NIR_11625	chr2	84891548	84892232	+	84889831	84892232	A5SS	ENSMUST00000151092.8	known	0.74	32	11	32	11	y	0.75	18	6	18	6	y	0.26	9	26	9	26	y	0.67	43	21	43	21	y	0.77	50	15	50	15	y	0.44	8	10	8	10	y	0.49	19	20	19	20	y	0.42	11	15	11	15	y	0.69	27	12	27	12	y	0.78	43	12	43	12	y	0.77	34	10	34	10	y	0.69	43	19	43	19	y	ENSMUSG00000033955.14	Tnks1bp1	chr2	protein_coding	tankyrase 1 binding protein 1
known_NIR_11626	chr2	90593889	90596180	+	90593889	90596174	A3SS	ENSMUST00000238890.2	known	0.00	0	21	0	21	n	0.00	0	18	0	18	n	0.00	0	32	0	32	n	0.00	0	30	0	30	n	0.00	0	32	0	32	n	0.17	2	10	2	10	y	0.00	0	26	0	26	n	0.00	0	23	0	23	n	0.00	0	14	0	14	n	0.00	0	48	0	48	n	0.00	0	16	0	16	n	0.00	0	29	0	29	n	ENSMUSG00000008200.16	Fnbp4	chr2	protein_coding	formin binding protein 4
known_NIR_11627	chr2	90597885	90598860	+	90597885	90598197	3pMXE	ENSMUST00000142631.2	known	0.40	4	6	4	6	y	0.40	4	6	4	6	y	0.38	9	15	9	15	y	0.35	6	11	6	11	y	0.33	4	8	4	8	y	0.44	4	5	4	5	n	0.33	4	8	4	8	y	0.67	6	3	6	3	n	0.50	7	7	7	7	y	0.32	6	13	6	13	y	0.27	4	11	4	11	y	0.39	7	11	7	11	y	ENSMUSG00000008200.16	Fnbp4	chr2	protein_coding	formin binding protein 4
known_NIR_11628	chr2	90597885;90598299	90598197;90598860	+	90597885	90598860	cassetteExon	ENSMUST00000238890.2	known	0.47	3.5	4	6;1	4	n	0.47	3.5	4	6;1	4	n	0.55	11.0	9	15;7	9	y	0.54	7.0	6	11;3	6	y	0.60	6.0	4	8;4	4	y	0.38	2.5	4	5;0	4	n	0.53	4.5	4	8;1	4	n	0.33	3.0	6	3;3	6	y	0.33	3.5	7	7;0	7	n	0.54	7.0	6	13;1	6	n	0.60	6.0	4	11;1	4	n	0.50	7.0	7	11;3	7	y	ENSMUSG00000008200.16	Fnbp4	chr2	protein_coding	formin binding protein 4
known_NIR_11629	chr2	90599044;90605192	90605094;90606249	+	90599044	90606249	cassetteExon	ENSMUST00000238890.2	known	0.00	0.0	22	0;0	22	n	0.03	0.5	18	0;1	18	n	0.09	3.0	32	2;4	32	y	0.00	0.0	24	0;0	24	n	0.11	2.5	20	2;3	20	y	0.15	2.0	11	2;2	11	y	0.00	0.0	15	0;0	15	n	0.00	0.0	14	0;0	14	n	0.00	0.0	31	0;0	31	n	0.07	2.0	26	2;2	26	y	0.02	0.5	20	0;1	20	n	0.04	1.0	24	2;0	24	n	ENSMUSG00000008200.16	Fnbp4	chr2	protein_coding	formin binding protein 4
known_NIR_11630	chr2	90677707	90679715	+	90677729	90679715	A5SS	ENSMUST00000136872.8	known	0.05	19	359	19	359	y	0.09	25	259	25	259	y	0.08	33	357	33	357	y	0.04	14	375	14	375	y	0.05	21	410	21	410	y	0.07	20	256	20	256	y	0.08	37	447	37	447	y	0.05	11	228	11	228	y	0.05	16	328	16	328	y	0.06	30	497	30	497	y	0.06	24	398	24	398	y	0.05	26	478	26	478	y	ENSMUSG00000027282.18	Mtch2	chr2	protein_coding	mitochondrial carrier 2
known_NIR_11631	chr2	90680048	90683160	+	90680048	90683184	A3SS	ENSMUST00000136872.8	known	0.01	3	405	3	405	y	0.00	1	309	1	309	n	0.00	0	391	0	391	n	0.00	0	465	0	465	n	0.01	3	523	3	523	y	0.00	0	239	0	239	n	0.00	1	494	1	494	n	0.01	2	243	2	243	y	0.01	2	379	2	379	y	0.00	0	503	0	503	n	0.00	1	463	1	463	n	0.00	2	605	2	605	y	ENSMUSG00000027282.18	Mtch2	chr2	protein_coding	mitochondrial carrier 2
known_NIR_11632	chr2	90680048	90683395	+	90680048	90683184	A3SS&ES	ENSMUST00000150232.8	known	0.02	7	405	7	405	y	0.02	7	309	7	309	y	0.01	5	391	5	391	y	0.03	13	465	13	465	y	0.02	9	523	9	523	y	0.00	1	239	1	239	n	0.02	9	494	9	494	y	0.01	2	243	2	243	y	0.01	4	379	4	379	y	0.02	9	503	9	503	y	0.01	6	463	6	463	y	0.01	9	605	9	605	y	ENSMUSG00000027282.18	Mtch2	chr2	protein_coding	mitochondrial carrier 2
known_NIR_11633	chr2	90680048	90683395	+	90680048;90683210	90683184;90683395	ES	ENSMUST00000136872.8	known	0.02	7	400.5	7	405;396	y	0.02	7	307.0	7	309;305	y	0.01	5	385.0	5	391;379	y	0.03	13	441.0	13	465;417	y	0.02	9	506.0	9	523;489	y	0.00	1	231.5	1	239;224	n	0.02	9	478.0	9	494;462	y	0.01	2	241.5	2	243;240	y	0.01	4	363.0	4	379;347	y	0.02	9	502.0	9	503;501	y	0.01	6	441.0	6	463;419	y	0.02	9	586.5	9	605;568	y	ENSMUSG00000027282.18	Mtch2	chr2	protein_coding	mitochondrial carrier 2
known_NIR_11634	chr2	90680048;90683210	90683160;90683395	+	90680048	90683395	cassetteExon	ENSMUST00000111467.4	known	0.97	199.5	7	3;396	7	y	0.96	153.0	7	1;305	7	n	0.97	189.5	5	0;379	5	n	0.94	208.5	13	0;417	13	n	0.96	246.0	9	3;489	9	y	0.99	112.0	1	0;224	1	n	0.96	231.5	9	1;462	9	n	0.98	121.0	2	2;240	2	y	0.98	174.5	4	2;347	4	y	0.97	250.5	9	0;501	9	n	0.97	210.0	6	1;419	6	n	0.97	285.0	9	2;568	9	y	ENSMUSG00000027282.18	Mtch2	chr2	protein_coding	mitochondrial carrier 2
known_NIR_11635	chr2	90683210	90683368	+	90683210	90683395	A3SS	ENSMUST00000136872.8	known	0.00	0	396	0	396	n	0.00	0	305	0	305	n	0.00	0	379	0	379	n	0.00	1	417	1	417	n	0.00	2	489	2	489	y	0.00	1	224	1	224	n	0.01	3	462	3	462	y	0.00	1	240	1	240	n	0.00	0	347	0	347	n	0.00	1	501	1	501	n	0.00	0	419	0	419	n	0.00	0	568	0	568	n	ENSMUSG00000027282.18	Mtch2	chr2	protein_coding	mitochondrial carrier 2
known_NIR_11636	chr2	90725221	90728728	-	90725221;90728437	90728344;90728728	ES	ENSMUST00000140248.2	known	0.99	578	6.5	578	11;2	y	0.99	689	6.0	689	7;5	y	0.99	536	4.5	536	4;5	y	0.99	539	7.0	539	6;8	y	1.00	623	2.5	623	3;2	y	0.99	317	2.0	317	2;2	y	0.99	802	4.5	802	5;4	y	0.99	310	2.0	310	3;1	n	0.99	504	5.0	504	6;4	y	1.00	791	3.5	791	4;3	y	0.99	715	5.0	715	7;3	y	0.99	681	6.5	681	6;7	y	ENSMUSG00000005510.10	Ndufs3	chr2	protein_coding	NADH:ubiquinone oxidoreductase core subunit S3
known_NIR_11637	chr2	90725221	90728981	-	90725221;90728847	90728728;90728981	ES	ENSMUST00000005647.4	known	0.00	0	588.5	0	578;599	n	0.00	2	660.0	2	689;631	y	0.01	5	541.0	5	536;546	y	0.00	0	584.0	0	539;629	n	0.00	0	662.5	0	623;702	n	0.00	0	333.5	0	317;350	n	0.00	0	781.5	0	802;761	n	0.00	0	313.0	0	310;316	n	0.00	2	529.5	2	504;555	y	0.00	2	811.0	2	791;831	y	0.00	2	717.0	2	715;719	y	0.00	0	712.0	0	681;743	n	ENSMUSG00000005510.10	Ndufs3	chr2	protein_coding	NADH:ubiquinone oxidoreductase core subunit S3
known_NIR_11638	chr2	90725221	90728981	-	90728847	90728981	3pMXE	ENSMUST00000152059.2	known	0.00	0	599	0	599	n	0.00	2	631	2	631	y	0.01	5	546	5	546	y	0.00	0	629	0	629	n	0.00	0	702	0	702	n	0.00	0	350	0	350	n	0.00	0	761	0	761	n	0.00	0	316	0	316	n	0.00	2	555	2	555	y	0.00	2	831	2	831	y	0.00	2	719	2	719	y	0.00	0	743	0	743	n	ENSMUSG00000005510.10	Ndufs3	chr2	protein_coding	NADH:ubiquinone oxidoreductase core subunit S3
known_NIR_11639	chr2	90735253	90736010	+	90735156	90736010	A5SS	ENSMUST00000111464.8	known	0.93	27	2	27	2	y	0.87	20	3	20	3	y	0.95	35	2	35	2	y	0.81	25	6	25	6	y	0.85	34	6	34	6	y	0.90	18	2	18	2	y	0.96	23	1	23	1	n	0.96	24	1	24	1	n	0.88	22	3	22	3	y	0.82	23	5	23	5	y	0.91	32	3	32	3	y	0.79	26	7	26	7	y	ENSMUSG00000005505.13	Kbtbd4	chr2	protein_coding	kelch repeat and BTB (POZ) domain containing 4
known_NIR_11640	chr2	90744519	90747773	-	90744519;90747255	90747198;90747773	ES	ENSMUST00000125001.11	known	1.00	222	1.0	222	1;1	n	0.99	235	2.5	235	3;2	y	0.99	240	1.5	240	1;2	n	1.00	307	0.0	307	0;0	n	1.00	340	0.0	340	0;0	n	1.00	174	0.5	174	1;0	n	0.99	270	4.0	270	5;3	y	1.00	154	0.0	154	0;0	n	1.00	210	0.0	210	0;0	n	0.99	325	2.5	325	4;1	n	1.00	308	0.0	308	0;0	n	1.00	330	1.0	330	0;2	n	ENSMUSG00000063235.19	Ptpmt1	chr2	protein_coding	protein tyrosine phosphatase, mitochondrial 1
known_NIR_11641	chr2	90770986	90828925	+	90770986	90818010	3pMXE	ENSMUST00000150546.2	known	0.77	23	7	23	7	y	0.68	15	7	15	7	y	0.69	44	20	44	20	y	0.69	34	15	34	15	y	0.60	32	21	32	21	y	0.74	23	8	23	8	y	0.62	28	17	28	17	y	0.79	23	6	23	6	y	0.47	14	16	14	16	y	0.67	32	16	32	16	y	0.57	21	16	21	16	y	0.74	42	15	42	15	y	ENSMUSG00000005506.17	Celf1	chr2	protein_coding	CUGBP, Elav-like family member 1
known_NIR_11642	chr2	90770986	90828925	+	90770986;90818161	90818010;90828925	ES	ENSMUST00000005643.14	known	0.62	23	14.0	23	7;21	y	0.68	15	7.0	15	7;7	y	0.61	44	28.0	44	20;36	y	0.52	34	32.0	34	15;49	y	0.49	32	33.0	32	21;45	y	0.70	23	10.0	23	8;12	y	0.53	28	25.0	28	17;33	y	0.67	23	11.5	23	6;17	y	0.43	14	18.5	14	16;21	y	0.52	32	29.0	32	16;42	y	0.61	21	13.5	21	16;11	y	0.63	42	25.0	42	15;35	y	ENSMUSG00000005506.17	Celf1	chr2	protein_coding	CUGBP, Elav-like family member 1
known_NIR_11643	chr2	90770986	90828925	+	90818161	90828925	5pMXE	ENSMUST00000111452.8	known	0.52	23	21	23	21	y	0.68	15	7	15	7	y	0.55	44	36	44	36	y	0.41	34	49	34	49	y	0.42	32	45	32	45	y	0.66	23	12	23	12	y	0.46	28	33	28	33	y	0.57	23	17	23	17	y	0.40	14	21	14	21	y	0.43	32	42	32	42	y	0.66	21	11	21	11	y	0.55	42	35	42	35	y	ENSMUSG00000005506.17	Celf1	chr2	protein_coding	CUGBP, Elav-like family member 1
known_NIR_11644	chr2	90770986;90784686	90784634;90818010	+	90770986	90818010	cassetteExon	ENSMUST00000150546.2	known	0.22	2.0	7	4;0	7	n	0.00	0.0	7	0;0	7	n	0.07	1.5	20	2;1	20	n	0.09	1.5	15	2;1	15	n	0.05	1.0	21	2;0	21	n	0.11	1.0	8	2;0	8	n	0.03	0.5	17	1;0	17	n	0.00	0.0	6	0;0	6	n	0.09	1.5	16	1;2	16	n	0.03	0.5	16	0;1	16	n	0.11	2.0	16	2;2	16	y	0.06	1.0	15	2;0	15	n	ENSMUSG00000005506.17	Celf1	chr2	protein_coding	CUGBP, Elav-like family member 1
known_NIR_11645	chr2	90770986;90784686	90784634;90828925	+	90770986	90828925	cassetteExon	ENSMUST00000111451.10	known	0.13	3.5	23	4;3	23	y	0.00	0.0	15	0;0	15	n	0.07	3.5	44	2;5	44	y	0.04	1.5	34	2;1	34	n	0.07	2.5	32	2;3	32	y	0.13	3.5	23	2;5	23	y	0.05	1.5	28	1;2	28	n	0.00	0.0	23	0;0	23	n	0.03	0.5	14	1;0	14	n	0.02	0.5	32	0;1	32	n	0.09	2.0	21	2;2	21	y	0.09	4.0	42	2;6	42	y	ENSMUSG00000005506.17	Celf1	chr2	protein_coding	CUGBP, Elav-like family member 1
known_NIR_11646	chr2	90770986;90784686	90784634;90828925	+	90770986;90818161	90818010;90828925	MXE	ENSMUST00000005643.14	known	0.20	3.5	14.0	4;3	7;21	y	0.00	0.0	7.0	0;0	7;7	n	0.11	3.5	28.0	2;5	20;36	y	0.04	1.5	32.0	2;1	15;49	n	0.07	2.5	33.0	2;3	21;45	y	0.26	3.5	10.0	2;5	8;12	y	0.06	1.5	25.0	1;2	17;33	n	0.00	0.0	11.5	0;0	6;17	n	0.03	0.5	18.5	1;0	16;21	n	0.02	0.5	29.0	0;1	16;42	n	0.13	2.0	13.5	2;2	16;11	y	0.14	4.0	25.0	2;6	15;35	y	ENSMUSG00000005506.17	Celf1	chr2	protein_coding	CUGBP, Elav-like family member 1
known_NIR_11647	chr2	90784686	90828925	+	90818161	90828925	5pMXE	ENSMUST00000111452.8	known	0.12	3	21	3	21	y	0.00	0	7	0	7	n	0.12	5	36	5	36	y	0.02	1	49	1	49	n	0.06	3	45	3	45	y	0.29	5	12	5	12	y	0.06	2	33	2	33	y	0.00	0	17	0	17	n	0.00	0	21	0	21	n	0.02	1	42	1	42	n	0.15	2	11	2	11	y	0.15	6	35	6	35	y	ENSMUSG00000005506.17	Celf1	chr2	protein_coding	CUGBP, Elav-like family member 1
known_NIR_11648	chr2	90784686;90818161	90818010;90828925	+	90784686	90828925	cassetteExon	ENSMUST00000177642.8	known	0.78	10.5	3	0;21	3	n	1.00	3.5	0	0;7	0	n	0.79	18.5	5	1;36	5	n	0.96	25.0	1	1;49	1	n	0.88	22.5	3	0;45	3	n	0.55	6.0	5	0;12	5	n	0.89	16.5	2	0;33	2	n	1.00	8.5	0	0;17	0	n	1.00	11.5	0	2;21	0	n	0.96	21.5	1	1;42	1	n	0.76	6.5	2	2;11	2	y	0.74	17.5	6	0;35	6	n	ENSMUSG00000005506.17	Celf1	chr2	protein_coding	CUGBP, Elav-like family member 1
known_NIR_11649	chr2	90835207	90836977	+	90835207	90836965	A3SS	ENSMUST00000005643.14	known	0.23	12	40	12	40	y	0.19	10	43	10	43	y	0.26	32	91	32	91	y	0.18	16	71	16	71	y	0.19	25	105	25	105	y	0.12	8	60	8	60	y	0.25	24	71	24	71	y	0.22	12	43	12	43	y	0.11	7	55	7	55	y	0.21	21	81	21	81	y	0.27	19	52	19	52	y	0.20	19	78	19	78	y	ENSMUSG00000005506.17	Celf1	chr2	protein_coding	CUGBP, Elav-like family member 1
known_NIR_11650	chr2	90838645	90839547	+	90838645	90839550	A3SS	ENSMUST00000005643.14	known	0.38	19	31	19	31	y	0.24	11	34	11	34	y	0.38	42	69	42	69	y	0.35	36	68	36	68	y	0.26	30	87	30	87	y	0.24	13	42	13	42	y	0.34	27	52	27	52	y	0.22	11	38	11	38	y	0.29	15	36	15	36	y	0.30	28	65	28	65	y	0.23	16	54	16	54	y	0.24	22	69	22	69	y	ENSMUSG00000005506.17	Celf1	chr2	protein_coding	CUGBP, Elav-like family member 1
known_NIR_11651	chr2	90843747	90843836	+	90843747	90846911	A3SS	ENSMUST00000005643.14	known	0.12	11	80	11	80	y	0.08	5	58	5	58	y	0.09	14	150	14	150	y	0.10	10	88	10	88	y	0.15	23	135	23	135	y	0.05	4	69	4	69	y	0.09	14	134	14	134	y	0.20	16	63	16	63	y	0.15	13	72	13	72	y	0.12	16	121	16	121	y	0.10	9	77	9	77	y	0.08	11	127	11	127	y	ENSMUSG00000005506.17	Celf1	chr2	protein_coding	CUGBP, Elav-like family member 1
known_NIR_11652	chr2	90886387	90886987	+	90886387	90887003	A3SS	ENSMUST00000067663.14	known	0.01	2	316	2	316	y	0.01	2	310	2	310	y	0.01	3	396	3	396	y	0.01	2	352	2	352	y	0.00	2	406	2	406	y	0.01	1	194	1	194	n	0.01	3	415	3	415	y	0.02	3	189	3	189	y	0.00	1	267	1	267	n	0.01	3	428	3	428	y	0.00	1	353	1	353	n	0.00	1	356	1	356	n	ENSMUSG00000002102.16	Psmc3	chr2	protein_coding	proteasome (prosome, macropain) 26S subunit, ATPase 3
known_NIR_11653	chr2	90889472	90894242	+	90889472	90889599	3pMXE	ENSMUST00000067663.14	known	0.00	0	456	0	456	n	0.00	0	524	0	524	n	0.00	0	490	0	490	n	0.00	0	404	0	404	n	0.00	2	535	2	535	y	0.00	0	242	0	242	n	0.00	1	578	1	578	n	0.00	0	254	0	254	n	0.00	0	360	0	360	n	0.00	1	609	1	609	n	0.01	6	528	6	528	y	0.01	3	498	3	498	y	ENSMUSG00000002102.16	Psmc3	chr2	protein_coding	proteasome (prosome, macropain) 26S subunit, ATPase 3
known_NIR_11654	chr2	90895149;90895352	90895251;90895927	-	90895149	90895927	cassetteExon	ENSMUST00000079976.10	known	0.81	21.0	5	29;13	5	y	0.77	16.5	5	20;13	5	y	0.89	32.0	4	43;21	4	y	0.71	10.0	4	12;8	4	y	0.84	26.5	5	33;20	5	y	1.00	26.0	0	24;28	0	n	0.92	23.5	2	28;19	2	y	0.83	24.5	5	28;21	5	y	0.88	14.5	2	16;13	2	y	0.87	26.0	4	30;22	4	y	0.78	18.0	5	23;13	5	y	0.79	18.5	5	27;10	5	y	ENSMUSG00000002105.16	Slc39a13	chr2	protein_coding	solute carrier family 39 (metal ion transporter), member 13
known_NIR_11655	chr2	90896045	90896358	-	90896059	90896358	A3SS	ENSMUST00000079976.10	known	0.73	11	4	11	4	y	0.93	14	1	14	1	n	0.81	21	5	21	5	y	1.00	21	0	21	0	n	0.89	24	3	24	3	y	1.00	20	0	20	0	n	1.00	23	0	23	0	n	1.00	18	0	18	0	n	1.00	9	0	9	0	n	0.94	17	1	17	1	n	0.89	16	2	16	2	y	0.95	20	1	20	1	n	ENSMUSG00000002105.16	Slc39a13	chr2	protein_coding	solute carrier family 39 (metal ion transporter), member 13
known_NIR_11656	chr2	90896084	90896358	-	90896045	90896358	A3SS	ENSMUST00000073575.12	known	0.27	4	11	4	11	y	0.00	0	14	0	14	n	0.19	5	21	5	21	y	0.25	7	21	7	21	y	0.11	3	24	3	24	y	0.23	6	20	6	20	y	0.08	2	23	2	23	y	0.31	8	18	8	18	y	0.10	1	9	1	9	n	0.32	8	17	8	17	y	0.27	6	16	6	16	y	0.09	2	20	2	20	y	ENSMUSG00000002105.16	Slc39a13	chr2	protein_coding	solute carrier family 39 (metal ion transporter), member 13
known_NIR_11657	chr2	90896084	90896358	-	90896059	90896358	A3SS	ENSMUST00000079976.10	known	0.50	4	4	4	4	n	0.00	0	1	0	1	n	0.50	5	5	5	5	y	1.00	7	0	7	0	n	0.50	3	3	3	3	n	1.00	6	0	6	0	n	1.00	2	0	2	0	n	1.00	8	0	8	0	n	1.00	1	0	1	0	n	0.89	8	1	8	1	n	0.75	6	2	6	2	n	0.67	2	1	2	1	n	ENSMUSG00000002105.16	Slc39a13	chr2	protein_coding	solute carrier family 39 (metal ion transporter), member 13
known_NIR_11658	chr2	90899084	90900500	-	90899998	90900500	3pMXE	ENSMUST00000133047.2	known	0.64	7	4	7	4	y	0.55	6	5	6	5	y	0.89	16	2	16	2	y	0.73	11	4	11	4	y	1.00	21	0	21	0	n	1.00	11	0	11	0	n	0.85	23	4	23	4	y	0.87	13	2	13	2	y	0.75	9	3	9	3	y	1.00	17	0	17	0	n	0.88	7	1	7	1	n	1.00	11	0	11	0	n	ENSMUSG00000002105.16	Slc39a13	chr2	protein_coding	solute carrier family 39 (metal ion transporter), member 13
known_NIR_11659	chr2	90927338	90929775	+	90912868	90929775	A5SS	ENSMUST00000169852.2	known	1.00	13	0	13	0	n	0.90	9	1	9	1	n	0.97	29	1	29	1	n	1.00	10	0	10	0	n	1.00	23	0	23	0	n	0.88	15	2	15	2	y	1.00	17	0	17	0	n	1.00	11	0	11	0	n	1.00	12	0	12	0	n	1.00	13	0	13	0	n	1.00	18	0	18	0	n	0.91	10	1	10	1	n	ENSMUSG00000002111.9	Spi1	chr2	protein_coding	spleen focus forming virus (SFFV) proviral integration oncogene
known_NIR_11660	chr2	90969100	90973101	-	90969100;90970971	90970902;90973101	ES	ENSMUST00000111373.8	known	0.27	8	22.0	8	13;31	y	0.14	3	18.0	3	21;15	y	0.11	1	8.0	1	4;12	n	0.24	6	19.0	6	19;19	y	0.18	8	35.5	8	34;37	y	0.00	0	9.5	0	7;12	n	0.15	5	27.5	5	20;35	y	0.34	6	11.5	6	12;11	y	0.32	10	21.5	10	17;26	y	0.21	8	29.5	8	21;38	y	0.22	6	21.0	6	25;17	y	0.26	9	26.0	9	21;31	y	ENSMUSG00000040687.17	Madd	chr2	protein_coding	MAP-kinase activating death domain
known_NIR_11661	chr2	90988488	90988750	-	90988488	90988753	A5SS	ENSMUST00000111373.8	known	1.00	7	0	7	0	n	1.00	7	0	7	0	n	0.75	3	1	3	1	n	1.00	3	0	3	0	n	0.82	9	2	9	2	y	1.00	9	0	9	0	n	0.78	7	2	7	2	n	1.00	7	0	7	0	n	0.92	11	1	11	1	n	0.83	5	1	5	1	n	1.00	7	0	7	0	n	0.82	14	3	14	3	y	ENSMUSG00000040687.17	Madd	chr2	protein_coding	MAP-kinase activating death domain
known_NIR_11662	chr2	90988488	90988762	-	90988488	90988750	A5SS	ENSMUST00000111375.8	known	0.36	4	7	4	7	y	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.36	5	9	5	9	y	0.00	0	9	0	9	n	0.30	3	7	3	7	y	0.00	0	7	0	7	n	0.21	3	11	3	11	y	0.29	2	5	2	5	n	0.36	4	7	4	7	y	0.36	8	14	8	14	y	ENSMUSG00000040687.17	Madd	chr2	protein_coding	MAP-kinase activating death domain
known_NIR_11663	chr2	90988488	90988762	-	90988488	90988753	A5SS	ENSMUST00000111373.8	known	1.00	4	0	4	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.71	5	2	5	2	n	-	-	-	-	-	-	0.60	3	2	3	2	n	-	-	-	-	-	-	0.75	3	1	3	1	n	0.67	2	1	2	1	n	1.00	4	0	4	0	n	0.73	8	3	8	3	y	ENSMUSG00000040687.17	Madd	chr2	protein_coding	MAP-kinase activating death domain
known_NIR_11664	chr2	90993946;90994367	90994308;90995711	-	90993946	90995711	cassetteExon	ENSMUST00000111373.8	known	0.12	1.5	11	2;1	11	n	0.00	0.0	8	0;0	8	n	0.20	1.0	4	0;2	4	n	0.00	0.0	8	0;0	8	n	0.08	1.0	12	1;1	12	n	-	-	-	-	-	-	0.00	0.0	12	0;0	12	n	0.25	1.0	3	1;1	3	n	0.00	0.0	4	0;0	4	n	0.10	1.5	13	2;1	13	n	0.00	0.0	7	0;0	7	n	0.44	4.0	5	3;5	5	y	ENSMUSG00000040687.17	Madd	chr2	protein_coding	MAP-kinase activating death domain
known_NIR_11665	chr2	90997030	90997259	-	90997030	90997388	A5SS	ENSMUST00000111373.8	known	1.00	8	0	8	0	n	0.88	7	1	7	1	n	1.00	6	0	6	0	n	1.00	8	0	8	0	n	0.82	14	3	14	3	y	1.00	5	0	5	0	n	0.67	4	2	4	2	n	0.89	8	1	8	1	n	1.00	4	0	4	0	n	1.00	11	0	11	0	n	1.00	7	0	7	0	n	0.75	6	2	6	2	n	ENSMUSG00000040687.17	Madd	chr2	protein_coding	MAP-kinase activating death domain
known_NIR_11666	chr2	91020629	91021084	-	91020629	91020807	A5SS	ENSMUST00000133261.2	known	0.01	3	431	3	431	y	0.00	0	423	0	423	n	0.00	1	248	1	248	n	0.00	0	394	0	394	n	0.00	0	435	0	435	n	0.00	0	231	0	231	n	0.00	0	452	0	452	n	0.00	0	219	0	219	n	0.00	0	327	0	327	n	0.00	0	544	0	544	n	0.00	1	419	1	419	n	0.00	0	433	0	433	n	ENSMUSG00000002108.11	Nr1h3	chr2	protein_coding	nuclear receptor subfamily 1, group H, member 3
known_NIR_11667	chr2	91020629	91021084	-	91020629;91020986	91020807;91021084	ES	ENSMUST00000111356.8	known	0.01	3	382.0	3	431;333	y	0.00	0	373.5	0	423;324	n	0.00	1	220.5	1	248;193	n	0.00	0	360.5	0	394;327	n	0.00	0	416.5	0	435;398	n	0.00	0	190.0	0	231;149	n	0.00	0	398.0	0	452;344	n	0.00	0	204.0	0	219;189	n	0.00	0	289.5	0	327;252	n	0.00	0	463.5	0	544;383	n	0.00	1	378.5	1	419;338	n	0.00	0	354.0	0	433;275	n	ENSMUSG00000002108.11	Nr1h3	chr2	protein_coding	nuclear receptor subfamily 1, group H, member 3
known_NIR_11668	chr2	91020629	91021084	-	91020986	91021084	A3SS	ENSMUST00000130031.2	known	0.01	3	333	3	333	y	0.00	0	324	0	324	n	0.01	1	193	1	193	n	0.00	0	327	0	327	n	0.00	0	398	0	398	n	0.00	0	149	0	149	n	0.00	0	344	0	344	n	0.00	0	189	0	189	n	0.00	0	252	0	252	n	0.00	0	383	0	383	n	0.00	1	338	1	338	n	0.00	0	275	0	275	n	ENSMUSG00000002108.11	Nr1h3	chr2	protein_coding	nuclear receptor subfamily 1, group H, member 3
known_NIR_11669	chr2	91024041	91024998	-	91024041	91025076	A5SS	ENSMUST00000111356.8	known	0.00	0	35	0	35	n	0.03	1	32	1	32	n	0.13	5	33	5	33	y	0.06	2	32	2	32	y	0.10	5	47	5	47	y	0.04	1	27	1	27	n	0.02	1	45	1	45	n	0.04	1	23	1	23	n	0.00	0	31	0	31	n	0.03	1	31	1	31	n	0.00	0	33	0	33	n	0.03	1	37	1	37	n	ENSMUSG00000002108.11	Nr1h3	chr2	protein_coding	nuclear receptor subfamily 1, group H, member 3
known_NIR_11670	chr2	91024041	91024998	-	91024041	91025310	A5SS	ENSMUST00000150654.8	known	0.00	0	115	0	115	n	0.01	1	91	1	91	n	0.10	5	44	5	44	y	0.02	2	122	2	122	y	0.05	5	103	5	103	y	0.02	1	41	1	41	n	0.01	1	86	1	86	n	0.02	1	65	1	65	n	0.00	0	76	0	76	n	0.01	1	109	1	109	n	0.00	0	93	0	93	n	0.01	1	96	1	96	n	ENSMUSG00000002108.11	Nr1h3	chr2	protein_coding	nuclear receptor subfamily 1, group H, member 3
known_NIR_11671	chr2	91024041	91025076	-	91024041	91025310	A5SS	ENSMUST00000150654.8	known	0.23	35	115	35	115	y	0.26	32	91	32	91	y	0.43	33	44	33	44	y	0.21	32	122	32	122	y	0.31	47	103	47	103	y	0.40	27	41	27	41	y	0.34	45	86	45	86	y	0.26	23	65	23	65	y	0.29	31	76	31	76	y	0.22	31	109	31	109	y	0.26	33	93	33	93	y	0.28	37	96	37	96	y	ENSMUSG00000002108.11	Nr1h3	chr2	protein_coding	nuclear receptor subfamily 1, group H, member 3
known_NIR_11672	chr2	91024041	91025378	-	91024041	91024998	5pMXE	ENSMUST00000111355.8	known	1.00	106	0	106	0	n	0.99	96	1	96	1	n	0.92	56	5	56	5	y	0.98	127	2	127	2	y	0.97	143	5	143	5	y	0.98	63	1	63	1	n	0.99	111	1	111	1	n	0.99	72	1	72	1	n	1.00	105	0	105	0	n	0.99	141	1	141	1	n	1.00	102	0	102	0	n	0.99	139	1	139	1	n	ENSMUSG00000002108.11	Nr1h3	chr2	protein_coding	nuclear receptor subfamily 1, group H, member 3
known_NIR_11673	chr2	91024041	91025378	-	91024041	91025076	A5SS	ENSMUST00000111356.8	known	0.75	106	35	106	35	y	0.75	96	32	96	32	y	0.63	56	33	56	33	y	0.80	127	32	127	32	y	0.75	143	47	143	47	y	0.70	63	27	63	27	y	0.71	111	45	111	45	y	0.76	72	23	72	23	y	0.77	105	31	105	31	y	0.82	141	31	141	31	y	0.76	102	33	102	33	y	0.79	139	37	139	37	y	ENSMUSG00000002108.11	Nr1h3	chr2	protein_coding	nuclear receptor subfamily 1, group H, member 3
known_NIR_11674	chr2	91024041	91025378	-	91024041	91025310	5pMXE	ENSMUST00000150654.8	known	0.48	106	115	106	115	y	0.51	96	91	96	91	y	0.56	56	44	56	44	y	0.51	127	122	127	122	y	0.58	143	103	143	103	y	0.61	63	41	63	41	y	0.56	111	86	111	86	y	0.53	72	65	72	65	y	0.58	105	76	105	76	y	0.56	141	109	141	109	y	0.52	102	93	102	93	y	0.59	139	96	139	96	y	ENSMUSG00000002108.11	Nr1h3	chr2	protein_coding	nuclear receptor subfamily 1, group H, member 3
known_NIR_11675	chr2	91024041	91033090	-	91024041	91025076	5pMXE	ENSMUST00000111356.8	known	0.00	0	35	0	35	n	0.00	0	32	0	32	n	0.00	0	33	0	33	n	0.03	1	32	1	32	n	0.00	0	47	0	47	n	0.00	0	27	0	27	n	0.02	1	45	1	45	n	0.00	0	23	0	23	n	0.06	2	31	2	31	y	0.06	2	31	2	31	y	0.00	0	33	0	33	n	0.03	1	37	1	37	n	ENSMUSG00000002108.11	Nr1h3	chr2	protein_coding	nuclear receptor subfamily 1, group H, member 3
known_NIR_11676	chr2	91024041	91033090	-	91024041	91025310	5pMXE	ENSMUST00000150654.8	known	0.00	0	115	0	115	n	0.00	0	91	0	91	n	0.00	0	44	0	44	n	0.01	1	122	1	122	n	0.00	0	103	0	103	n	0.00	0	41	0	41	n	0.01	1	86	1	86	n	0.00	0	65	0	65	n	0.03	2	76	2	76	y	0.02	2	109	2	109	y	0.00	0	93	0	93	n	0.01	1	96	1	96	n	ENSMUSG00000002108.11	Nr1h3	chr2	protein_coding	nuclear receptor subfamily 1, group H, member 3
known_NIR_11677	chr2	91024041	91033090	-	91024041	91025378	5pMXE	ENSMUST00000111354.2	known	0.00	0	106	0	106	n	0.00	0	96	0	96	n	0.00	0	56	0	56	n	0.01	1	127	1	127	n	0.00	0	143	0	143	n	0.00	0	63	0	63	n	0.01	1	111	1	111	n	0.00	0	72	0	72	n	0.02	2	105	2	105	y	0.01	2	141	2	141	y	0.00	0	102	0	102	n	0.01	1	139	1	139	n	ENSMUSG00000002108.11	Nr1h3	chr2	protein_coding	nuclear receptor subfamily 1, group H, member 3
known_NIR_11678	chr2	91033393;91033665	91033611;91033946	+	91033393	91033946	cassetteExon	ENSMUST00000150403.8	known	0.00	0.0	84	0;0	84	n	0.00	0.0	54	0;0	54	n	0.00	0.0	106	0;0	106	n	0.00	0.0	95	0;0	95	n	0.00	0.5	149	0;1	149	n	0.00	0.0	56	0;0	56	n	0.02	2.0	102	2;2	102	y	0.00	0.0	63	0;0	63	n	0.00	0.0	58	0;0	58	n	0.01	0.5	89	0;1	89	n	0.00	0.0	48	0;0	48	n	0.00	0.0	93	0;0	93	n	ENSMUSG00000002103.17	Acp2	chr2	protein_coding	acid phosphatase 2, lysosomal
known_NIR_11679	chr2	91034041	91034573	+	91034041	91034585	A3SS	ENSMUST00000150403.8	known	0.02	2	87	2	87	y	0.08	4	49	4	49	y	0.01	1	107	1	107	n	0.01	1	105	1	105	n	0.02	2	126	2	126	y	0.02	1	62	1	62	n	0.01	1	91	1	91	n	0.02	2	86	2	86	y	0.03	2	66	2	66	y	0.03	3	90	3	90	y	0.05	3	63	3	63	y	0.00	0	85	0	85	n	ENSMUSG00000002103.17	Acp2	chr2	protein_coding	acid phosphatase 2, lysosomal
known_NIR_11680	chr2	91047751;91049234	91049089;91064453	-	91047751	91064453	cassetteExon	ENSMUST00000152277.8	known	0.89	8.5	1	4;13	1	n	0.86	6.0	1	6;6	1	n	1.00	5.5	0	8;3	0	n	0.86	12.5	2	18;7	2	y	0.69	11.0	5	16;6	5	y	0.65	5.5	3	9;2	3	y	0.70	11.5	5	14;9	5	y	1.00	3.0	0	3;3	0	n	0.88	7.5	1	4;11	1	n	0.68	12.5	6	13;12	6	y	1.00	5.0	0	4;6	0	n	0.77	10.0	3	12;8	3	y	ENSMUSG00000002109.15	Ddb2	chr2	protein_coding	damage specific DNA binding protein 2
known_NIR_11681	chr2	91049234	91064453	-	91042959	91064453	A3SS	ENSMUST00000150427.8	known	0.93	13	1	13	1	n	1.00	6	0	6	0	n	1.00	3	0	3	0	n	1.00	7	0	7	0	n	1.00	6	0	6	0	n	1.00	2	0	2	0	n	1.00	9	0	9	0	n	1.00	3	0	3	0	n	0.85	11	2	11	2	y	1.00	12	0	12	0	n	1.00	6	0	6	0	n	1.00	8	0	8	0	n	ENSMUSG00000002109.15	Ddb2	chr2	protein_coding	damage specific DNA binding protein 2
known_NIR_11682	chr2	91087271	91090213	+	91087271	91090209	A3SS	ENSMUST00000028694.12	known	0.26	14	40	14	40	y	0.27	14	38	14	38	y	0.26	22	64	22	64	y	0.42	28	39	28	39	y	0.35	29	55	29	55	y	0.18	9	40	9	40	y	0.35	26	48	26	48	y	0.25	15	45	15	45	y	0.35	16	30	16	30	y	0.34	30	58	30	58	y	0.21	12	44	12	44	y	0.26	18	51	18	51	y	ENSMUSG00000027257.14	Pacsin3	chr2	protein_coding	protein kinase C and casein kinase substrate in neurons 3
known_NIR_11683	chr2	91087271	91090516	+	91087271	91090213	A3SS&ES	ENSMUST00000156919.8	known	0.00	0	14	0	14	n	0.00	0	14	0	14	n	0.00	0	22	0	22	n	0.00	0	28	0	28	n	0.06	2	29	2	29	y	0.00	0	9	0	9	n	0.07	2	26	2	26	y	0.00	0	15	0	15	n	0.06	1	16	1	16	n	0.00	0	30	0	30	n	0.00	0	12	0	12	n	0.05	1	18	1	18	n	ENSMUSG00000027257.14	Pacsin3	chr2	protein_coding	protein kinase C and casein kinase substrate in neurons 3
known_NIR_11684	chr2	91087271	91090516	+	91090272	91090516	A5SS&ES	ENSMUST00000134699.8	known	0.00	0	116	0	116	n	0.00	0	103	0	103	n	0.00	0	144	0	144	n	0.00	0	144	0	144	n	0.01	2	177	2	177	y	0.00	0	92	0	92	n	0.01	2	166	2	166	y	0.00	0	135	0	135	n	0.01	1	122	1	122	n	0.00	0	189	0	189	n	0.00	0	111	0	111	n	0.01	1	150	1	150	n	ENSMUSG00000027257.14	Pacsin3	chr2	protein_coding	protein kinase C and casein kinase substrate in neurons 3
known_NIR_11685	chr2	91087271;91090272	91090209;91090516	+	91087271	91090516	cassetteExon	ENSMUST00000144394.8	known	1.00	78.0	0	40;116	0	n	1.00	70.5	0	38;103	0	n	1.00	104.0	0	64;144	0	n	1.00	91.5	0	39;144	0	n	0.98	116.0	2	55;177	2	y	1.00	66.0	0	40;92	0	n	0.98	107.0	2	48;166	2	y	1.00	90.0	0	45;135	0	n	0.99	76.0	1	30;122	1	n	1.00	123.5	0	58;189	0	n	1.00	77.5	0	44;111	0	n	0.99	100.5	1	51;150	1	n	ENSMUSG00000027257.14	Pacsin3	chr2	protein_coding	protein kinase C and casein kinase substrate in neurons 3
known_NIR_11686	chr2	91087271;91090272	91090213;91090516	+	91087271	91090516	cassetteExon	ENSMUST00000144394.8	known	1.00	65.0	0	14;116	0	n	1.00	58.5	0	14;103	0	n	1.00	83.0	0	22;144	0	n	1.00	86.0	0	28;144	0	n	0.98	103.0	2	29;177	2	y	1.00	50.5	0	9;92	0	n	0.98	96.0	2	26;166	2	y	1.00	75.0	0	15;135	0	n	0.99	69.0	1	16;122	1	n	1.00	109.5	0	30;189	0	n	1.00	61.5	0	12;111	0	n	0.99	84.0	1	18;150	1	n	ENSMUSG00000027257.14	Pacsin3	chr2	protein_coding	protein kinase C and casein kinase substrate in neurons 3
known_NIR_11687	chr2	91087921	91090209	+	91087271	91090209	A5SS	ENSMUST00000028694.12	known	0.40	27	40	27	40	y	0.28	15	38	15	38	y	0.25	21	64	21	64	y	0.39	25	39	25	39	y	0.45	45	55	45	55	y	0.31	18	40	18	40	y	0.27	18	48	18	48	y	0.30	19	45	19	45	y	0.45	25	30	25	30	y	0.39	37	58	37	58	y	0.31	20	44	20	44	y	0.28	20	51	20	51	y	ENSMUSG00000027257.14	Pacsin3	chr2	protein_coding	protein kinase C and casein kinase substrate in neurons 3
known_NIR_11688	chr2	91087921	91090209	+	91087921	91090213	A3SS	ENSMUST00000111349.9	known	0.77	27	8	27	8	y	0.60	15	10	15	10	y	0.68	21	10	21	10	y	0.68	25	12	25	12	y	0.67	45	22	45	22	y	0.82	18	4	18	4	y	0.58	18	13	18	13	y	0.63	19	11	19	11	y	0.81	25	6	25	6	y	0.65	37	20	37	20	y	0.74	20	7	20	7	y	0.57	20	15	20	15	y	ENSMUSG00000027257.14	Pacsin3	chr2	protein_coding	protein kinase C and casein kinase substrate in neurons 3
known_NIR_11689	chr2	91087921	91090213	+	91087271	91090213	A5SS	ENSMUST00000168916.8	known	0.36	8	14	8	14	y	0.42	10	14	10	14	y	0.31	10	22	10	22	y	0.30	12	28	12	28	y	0.43	22	29	22	29	y	0.31	4	9	4	9	y	0.33	13	26	13	26	y	0.42	11	15	11	15	y	0.27	6	16	6	16	y	0.40	20	30	20	30	y	0.37	7	12	7	12	y	0.45	15	18	15	18	y	ENSMUSG00000027257.14	Pacsin3	chr2	protein_coding	protein kinase C and casein kinase substrate in neurons 3
known_NIR_11690	chr2	91089772	91090209	+	91087271	91090209	A5SS	ENSMUST00000028694.12	known	0.00	0	40	0	40	n	0.00	0	38	0	38	n	0.00	0	64	0	64	n	0.00	0	39	0	39	n	0.00	0	55	0	55	n	0.00	0	40	0	40	n	0.00	0	48	0	48	n	0.00	0	45	0	45	n	0.00	0	30	0	30	n	0.00	0	58	0	58	n	0.00	0	44	0	44	n	0.04	2	51	2	51	y	ENSMUSG00000027257.14	Pacsin3	chr2	protein_coding	protein kinase C and casein kinase substrate in neurons 3
known_NIR_11691	chr2	91089772	91090209	+	91087921	91090209	A5SS	ENSMUST00000131711.8	known	0.00	0	27	0	27	n	0.00	0	15	0	15	n	0.00	0	21	0	21	n	0.00	0	25	0	25	n	0.00	0	45	0	45	n	0.00	0	18	0	18	n	0.00	0	18	0	18	n	0.00	0	19	0	19	n	0.00	0	25	0	25	n	0.00	0	37	0	37	n	0.00	0	20	0	20	n	0.09	2	20	2	20	y	ENSMUSG00000027257.14	Pacsin3	chr2	protein_coding	protein kinase C and casein kinase substrate in neurons 3
known_NIR_11692	chr2	91096160	91096571	+	91096035	91096571	A5SS	ENSMUST00000080008.13	known	0.00	0	209	0	209	n	0.00	0	127	0	127	n	0.00	0	221	0	221	n	0.00	0	222	0	222	n	0.00	0	304	0	304	n	0.00	0	126	0	126	n	0.00	0	285	0	285	n	0.00	0	171	0	171	n	0.00	0	169	0	169	n	0.01	2	276	2	276	y	0.00	0	187	0	187	n	0.00	0	299	0	299	n	ENSMUSG00000027255.15	Arfgap2	chr2	protein_coding	ADP-ribosylation factor GTPase activating protein 2
known_NIR_11693	chr2	91098853;91099456	91099415;91099797	+	91098853	91099797	cassetteExon	ENSMUST00000080008.13	known	0.02	3.5	170	0;7	170	n	0.04	7.5	178	4;11	178	y	0.02	2.5	162	0;5	162	n	0.05	10.5	217	10;11	217	y	0.03	10.5	315	5;16	315	y	0.04	4.5	100	2;7	100	y	0.06	14.5	214	18;11	214	y	0.03	4.5	135	2;7	135	y	0.03	5.0	174	4;6	174	y	0.02	4.5	215	3;6	215	y	0.02	4.5	193	3;6	193	y	0.03	9.0	289	10;8	289	y	ENSMUSG00000027255.15	Arfgap2	chr2	protein_coding	ADP-ribosylation factor GTPase activating protein 2
known_NIR_11694	chr2	91249263	91252211	-	91214204	91252211	A3SS	ENSMUST00000064652.14	known	1.00	1	0	1	0	n	0.78	7	2	7	2	n	0.33	1	2	1	2	n	0.50	6	6	6	6	y	0.50	6	6	6	6	y	0.00	0	2	0	2	n	0.67	6	3	6	3	n	0.38	3	5	3	5	n	0.67	2	1	2	1	n	0.80	8	2	8	2	y	0.67	2	1	2	1	n	0.62	5	3	5	3	n	ENSMUSG00000040591.19	1110051M20Rik	chr2	protein_coding	RIKEN cDNA 1110051M20 gene
known_NIR_11695	chr2	91446805	91450096	+	91446805	91450033	A3SS	ENSMUST00000111338.10	known	0.00	0	20	0	20	n	0.14	4	24	4	24	y	0.05	1	18	1	18	n	0.00	0	22	0	22	n	0.00	0	24	0	24	n	0.00	0	9	0	9	n	0.00	0	19	0	19	n	0.12	1	7	1	7	n	0.14	2	12	2	12	y	0.00	0	14	0	14	n	0.00	0	14	0	14	n	0.00	0	18	0	18	n	ENSMUSG00000040549.17	Ckap5	chr2	protein_coding	cytoskeleton associated protein 5
known_NIR_11696	chr2	91461171	91463324	-	91461171	91463321	A5SS	ENSMUST00000028681.15	known	0.01	24	4266	24	4266	y	0.01	26	3937	26	3937	y	0.01	36	4711	36	4711	y	0.01	31	5587	31	5587	y	0.00	0	7069	0	7069	n	0.00	13	3077	13	3077	y	0.00	23	5671	23	5671	y	0.01	21	3680	21	3680	y	0.00	12	4112	12	4112	y	0.01	44	6628	44	6628	y	0.00	21	4701	21	4701	y	0.01	33	6461	33	6461	y	ENSMUSG00000027249.16	F2	chr2	protein_coding	coagulation factor II
known_NIR_11697	chr2	91478422	91479496	-	91479371	91479496	3pMXE	ENSMUST00000152769.2	known	0.60	3	2	3	2	n	1.00	1	0	1	0	n	1.00	2	0	2	0	n	1.00	2	0	2	0	n	0.75	6	2	6	2	n	0.67	4	2	4	2	n	0.62	8	5	8	5	y	1.00	2	0	2	0	n	-	-	-	-	-	-	0.86	6	1	6	1	n	1.00	2	0	2	0	n	1.00	4	0	4	0	n	ENSMUSG00000075040.10	Zfp408	chr2	protein_coding	zinc finger protein 408
known_NIR_11698	chr2	91478422;91479371	91479281;91479496	-	91478422	91479496	cassetteExon	ENSMUST00000099714.10	known	0.40	2.0	3	2;2	3	n	0.00	0.0	1	0;0	1	n	0.00	0.0	2	0;0	2	n	0.43	1.5	2	3;0	2	n	0.20	1.5	6	1;2	6	n	0.20	1.0	4	0;2	4	n	0.36	4.5	8	4;5	8	y	0.00	0.0	2	0;0	2	n	-	-	-	-	-	-	0.08	0.5	6	0;1	6	n	0.20	0.5	2	1;0	2	n	0.11	0.5	4	1;0	4	n	ENSMUSG00000075040.10	Zfp408	chr2	protein_coding	zinc finger protein 408
known_NIR_11699	chr2	91480597	91484418	+	91482168	91484418	5pMXE	ENSMUST00000141012.2	known	0.00	0	9	0	9	n	0.21	3	11	3	11	y	0.00	0	32	0	32	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.04	1	27	1	27	n	0.00	0	8	0	8	n	0.00	0	15	0	15	n	0.00	0	15	0	15	n	0.00	0	16	0	16	n	0.00	0	5	0	5	n	0.08	1	11	1	11	n	ENSMUSG00000027247.17	Arhgap1	chr2	protein_coding	Rho GTPase activating protein 1
known_NIR_11700	chr2	91481999	91482109	+	91480597	91482109	A5SS	ENSMUST00000111329.8	known	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.36	5	9	5	9	y	0.00	0	7	0	7	n	0.50	3	3	3	3	n	0.00	0	11	0	11	n	0.25	1	3	1	3	n	0.40	2	3	2	3	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000027247.17	Arhgap1	chr2	protein_coding	Rho GTPase activating protein 1
known_NIR_11701	chr2	91482168	91484391	+	91482168	91484418	A3SS	ENSMUST00000111329.8	known	0.00	0	9	0	9	n	0.21	3	11	3	11	y	0.03	1	32	1	32	n	0.08	1	11	1	11	n	0.09	1	10	1	10	n	0.10	3	27	3	27	y	0.27	3	8	3	8	y	0.17	3	15	3	15	y	0.00	0	15	0	15	n	0.30	7	16	7	16	y	0.00	0	5	0	5	n	0.00	0	11	0	11	n	ENSMUSG00000027247.17	Arhgap1	chr2	protein_coding	Rho GTPase activating protein 1
known_NIR_11702	chr2	91509774	91510688	-	91509774;91510342	91510265;91510688	ES	ENSMUST00000076803.12	known	0.04	3	66.5	3	63;70	y	0.03	2	78.0	2	77;79	y	0.04	6	147.0	6	135;159	y	0.05	4	82.0	4	85;79	y	0.03	3	116.5	3	126;107	y	0.02	2	91.0	2	90;92	y	0.08	8	97.5	8	103;92	y	0.03	3	88.5	3	87;90	y	0.01	1	66.5	1	65;68	n	0.03	3	87.0	3	90;84	y	0.00	0	76.0	0	68;84	n	0.03	3	93.0	3	94;92	y	ENSMUSG00000027244.15	Atg13	chr2	protein_coding	autophagy related 13
known_NIR_11703	chr2	91512040	91515014	-	91512040	91512371	5pMXE	ENSMUST00000126000.8	known	0.98	59	1	59	1	n	0.97	63	2	63	2	y	0.96	128	5	128	5	y	1.00	86	0	86	0	n	0.96	108	4	108	4	y	0.97	78	2	78	2	y	0.99	79	1	79	1	n	0.96	81	3	81	3	y	0.95	56	3	56	3	y	0.97	75	2	75	2	y	0.99	74	1	74	1	n	0.94	61	4	61	4	y	ENSMUSG00000027244.15	Atg13	chr2	protein_coding	autophagy related 13
known_NIR_11704	chr2	91512040;91512481	91512371;91515014	-	91512040	91515014	cassetteExon	ENSMUST00000076803.12	known	0.05	3.0	59	1;5	59	n	0.04	2.5	63	2;3	63	y	0.02	2.5	128	5;0	128	n	0.00	0.0	86	0;0	86	n	0.04	4.0	108	4;4	108	y	0.01	1.0	78	2;0	78	n	0.01	0.5	79	1;0	79	n	0.02	1.5	81	3;0	81	n	0.03	2.0	56	3;1	56	n	0.01	1.0	75	2;0	75	n	0.01	1.0	74	1;1	74	n	0.05	3.5	61	4;3	61	y	ENSMUSG00000027244.15	Atg13	chr2	protein_coding	autophagy related 13
known_NIR_11705	chr2	91513246	91515014	-	91512040	91515014	A3SS	ENSMUST00000076803.12	known	0.00	0	59	0	59	n	0.00	0	63	0	63	n	0.00	0	128	0	128	n	0.00	0	86	0	86	n	0.00	0	108	0	108	n	0.00	0	78	0	78	n	0.04	3	79	3	79	y	0.00	0	81	0	81	n	0.00	0	56	0	56	n	0.00	0	75	0	75	n	0.00	0	74	0	74	n	0.00	0	61	0	61	n	ENSMUSG00000027244.15	Atg13	chr2	protein_coding	autophagy related 13
known_NIR_11706	chr2	91541410	91542425	+	91541320	91542425	A5SS	ENSMUST00000128140.2	known	0.83	10	2	10	2	y	0.82	9	2	9	2	y	0.78	7	2	7	2	n	0.77	10	3	10	3	y	0.90	26	3	26	3	y	0.88	7	1	7	1	n	0.57	8	6	8	6	y	0.82	9	2	9	2	y	0.92	12	1	12	1	n	1.00	11	0	11	0	n	0.85	11	2	11	2	y	0.76	19	6	19	6	y	ENSMUSG00000027243.9	Harbi1	chr2	protein_coding	harbinger transposase derived 1
known_NIR_11707	chr2	91541596	91542425	+	91541320	91542425	A5SS	ENSMUST00000128140.2	known	0.75	6	2	6	2	n	0.80	8	2	8	2	y	0.94	29	2	29	2	y	0.84	16	3	16	3	y	0.75	9	3	9	3	y	0.95	21	1	21	1	n	0.60	9	6	9	6	y	0.82	9	2	9	2	y	0.94	17	1	17	1	n	1.00	16	0	16	0	n	0.86	12	2	12	2	y	0.67	12	6	12	6	y	ENSMUSG00000027243.9	Harbi1	chr2	protein_coding	harbinger transposase derived 1
known_NIR_11708	chr2	91541596	91542425	+	91541410	91542425	A5SS	ENSMUST00000140183.2	known	0.38	6	10	6	10	y	0.47	8	9	8	9	y	0.81	29	7	29	7	y	0.62	16	10	16	10	y	0.26	9	26	9	26	y	0.75	21	7	21	7	y	0.53	9	8	9	8	y	0.50	9	9	9	9	y	0.59	17	12	17	12	y	0.59	16	11	16	11	y	0.52	12	11	12	11	y	0.39	12	19	12	19	y	ENSMUSG00000027243.9	Harbi1	chr2	protein_coding	harbinger transposase derived 1
known_NIR_11709	chr2	91543210	91548988	+	91543210	91550699	A3SS	ENSMUST00000090608.6	known	0.06	2	30	2	30	y	0.00	0	50	0	50	n	0.02	1	56	1	56	n	0.00	0	44	0	44	n	0.00	0	60	0	60	n	0.05	2	35	2	35	y	0.03	1	35	1	35	n	0.07	3	39	3	39	y	0.07	3	42	3	42	y	0.00	0	51	0	51	n	0.13	6	39	6	39	y	0.04	2	55	2	55	y	ENSMUSG00000027243.9	Harbi1	chr2	protein_coding	harbinger transposase derived 1
known_NIR_11710	chr2	91604092	91640375	+	91604092;91635455	91635369;91640375	ES	ENSMUST00000099712.10	known	0.05	1	19.5	1	18;21	n	0.06	1	14.5	1	13;16	n	0.15	5	29.0	5	23;35	y	0.13	4	26.0	4	27;25	y	0.32	9	19.0	9	19;19	y	0.25	3	9.0	3	12;6	y	0.22	5	18.0	5	11;25	y	0.22	5	17.5	5	24;11	y	0.16	3	15.5	3	12;19	y	0.11	3	25.0	3	27;23	y	0.38	11	18.0	11	20;16	y	0.38	13	21.5	13	20;23	y	ENSMUSG00000040506.17	Ambra1	chr2	protein_coding	autophagy/beclin 1 regulator 1
known_NIR_11711	chr2	91642078	91654805	+	91640554	91654805	A5SS	ENSMUST00000099712.10	known	0.00	0	22	0	22	n	0.00	0	12	0	12	n	0.00	0	34	0	34	n	0.03	1	30	1	30	n	0.00	0	35	0	35	n	0.00	0	20	0	20	n	0.00	0	39	0	39	n	0.00	0	21	0	21	n	0.13	3	20	3	20	y	0.00	0	23	0	23	n	0.00	0	13	0	13	n	0.03	1	35	1	35	n	ENSMUSG00000040506.17	Ambra1	chr2	protein_coding	autophagy/beclin 1 regulator 1
known_NIR_11712	chr2	91766427	91766870	-	91766306	91766870	A3SS	ENSMUST00000128152.8	known	0.02	1	64	1	64	n	0.00	0	50	0	50	n	0.02	1	46	1	46	n	0.02	1	49	1	49	n	0.00	0	70	0	70	n	0.00	0	34	0	34	n	0.02	1	58	1	58	n	0.00	0	26	0	26	n	0.03	1	37	1	37	n	0.03	2	61	2	61	y	0.00	0	57	0	57	n	0.00	0	67	0	67	n	ENSMUSG00000040479.13	Dgkz	chr2	protein_coding	diacylglycerol kinase zeta
known_NIR_11713	chr2	91775214	91775519	-	91775214	91793631	A5SS	ENSMUST00000028667.10	known	0.00	0	18	0	18	n	0.10	1	9	1	9	n	0.38	3	5	3	5	n	0.11	2	17	2	17	y	0.04	1	22	1	22	n	0.40	2	3	2	3	n	0.00	0	16	0	16	n	0.00	0	16	0	16	n	0.00	0	10	0	10	n	0.21	5	19	5	19	y	0.00	0	7	0	7	n	0.09	3	32	3	32	y	ENSMUSG00000040479.13	Dgkz	chr2	protein_coding	diacylglycerol kinase zeta
known_NIR_11714	chr2	91775214	91775519	-	91775214	91795765	A5SS	ENSMUST00000128152.8	known	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.38	3	5	3	5	n	0.40	2	3	2	3	n	0.08	1	11	1	11	n	1.00	2	0	2	0	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.50	5	5	5	5	y	0.00	0	7	0	7	n	0.30	3	7	3	7	y	ENSMUSG00000040479.13	Dgkz	chr2	protein_coding	diacylglycerol kinase zeta
known_NIR_11715	chr2	91775214	91793631	-	91775214	91795765	A5SS	ENSMUST00000128152.8	known	0.86	18	3	18	3	y	0.64	9	5	9	5	y	0.50	5	5	5	5	y	0.85	17	3	17	3	y	0.67	22	11	22	11	y	1.00	3	0	3	0	n	0.89	16	2	16	2	y	0.76	16	5	16	5	y	0.77	10	3	10	3	y	0.79	19	5	19	5	y	0.50	7	7	7	7	y	0.82	32	7	32	7	y	ENSMUSG00000040479.13	Dgkz	chr2	protein_coding	diacylglycerol kinase zeta
known_NIR_11716	chr2	92016954	92044394	+	92014697	92044394	A5SS	ENSMUST00000111294.8	known	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.22	2	7	2	7	n	0.33	4	8	4	8	y	0.14	2	12	2	12	y	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	ENSMUSG00000058318.16	Phf21a	chr2	protein_coding	PHD finger protein 21A
known_NIR_11717	chr2	92044434	92045794	+	92044434	92045809	A3SS	ENSMUST00000111293.9	known	0.25	1	3	1	3	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.29	2	5	2	5	n	0.22	4	14	4	14	y	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.40	4	6	4	6	y	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.29	2	5	2	5	n	0.00	0	10	0	10	n	ENSMUSG00000058318.16	Phf21a	chr2	protein_coding	PHD finger protein 21A
known_NIR_11718	chr2	92044434;92045920	92045794;92051817	+	92044434	92051817	cassetteExon	ENSMUST00000111294.8	known	0.44	4.0	5	1;7	5	n	0.75	6.0	2	0;12	2	n	0.66	15.5	8	0;31	8	n	0.78	3.5	1	2;5	1	n	0.85	16.5	3	4;29	3	y	0.88	7.5	1	0;15	1	n	0.67	10.0	5	0;20	5	n	0.74	8.5	3	4;13	3	y	1.00	4.5	0	0;9	0	n	0.75	6.0	2	0;12	2	n	0.86	6.0	1	2;10	1	n	0.79	7.5	2	0;15	2	n	ENSMUSG00000058318.16	Phf21a	chr2	protein_coding	PHD finger protein 21A
known_NIR_11719	chr2	92044434;92045920	92045809;92051817	+	92044434	92051817	cassetteExon	ENSMUST00000111294.8	known	0.50	5.0	5	3;7	5	y	0.83	10.0	2	8;12	2	y	0.73	21.5	8	12;31	8	y	0.83	5.0	1	5;5	1	n	0.88	21.5	3	14;29	3	y	0.91	10.0	1	5;15	1	n	0.73	13.5	5	7;20	5	y	0.76	9.5	3	6;13	3	y	1.00	6.0	0	3;9	0	n	0.83	9.5	2	7;12	2	y	0.88	7.5	1	5;10	1	n	0.86	12.5	2	10;15	2	y	ENSMUSG00000058318.16	Phf21a	chr2	protein_coding	PHD finger protein 21A
known_NIR_11720	chr2	92058826	92060983	+	92058826	92061004	A3SS	ENSMUST00000044036.15	known	0.00	0	17	0	17	n	0.00	0	6	0	6	n	0.10	2	19	2	19	y	0.00	0	13	0	13	n	0.03	1	30	1	30	n	0.00	0	10	0	10	n	0.07	1	13	1	13	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	ENSMUSG00000058318.16	Phf21a	chr2	protein_coding	PHD finger protein 21A
known_NIR_11721	chr2	92150804	92157258	+	92150804	92158660	A3SS	ENSMUST00000068702.14	known	0.75	6	2	6	2	n	1.00	2	0	2	0	n	0.67	6	3	6	3	n	1.00	4	0	4	0	n	0.56	10	8	10	8	y	1.00	4	0	4	0	n	1.00	2	0	2	0	n	0.75	6	2	6	2	n	1.00	3	0	3	0	n	0.71	5	2	5	2	n	1.00	2	0	2	0	n	0.73	8	3	8	3	y	ENSMUSG00000058318.16	Phf21a	chr2	protein_coding	PHD finger protein 21A
known_NIR_11722	chr2	92150804	92157261	+	92150804	92157258	A3SS	ENSMUST00000111290.10	known	0.45	5	6	5	6	y	0.50	2	2	2	2	n	0.54	7	6	7	6	y	0.33	2	4	2	4	n	0.29	4	10	4	10	y	0.00	0	4	0	4	n	0.60	3	2	3	2	n	0.25	2	6	2	6	n	0.50	3	3	3	3	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.33	4	8	4	8	y	ENSMUSG00000058318.16	Phf21a	chr2	protein_coding	PHD finger protein 21A
known_NIR_11723	chr2	92150804	92157261	+	92150804	92158660	A3SS	ENSMUST00000068702.14	known	0.71	5	2	5	2	n	1.00	2	0	2	0	n	0.70	7	3	7	3	y	1.00	2	0	2	0	n	0.33	4	8	4	8	y	-	-	-	-	-	-	1.00	3	0	3	0	n	0.50	2	2	2	2	n	1.00	3	0	3	0	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.57	4	3	4	3	n	ENSMUSG00000058318.16	Phf21a	chr2	protein_coding	PHD finger protein 21A
known_NIR_11724	chr2	92150804;92157509	92157261;92158657	+	92150804	92158657	cassetteExon	ENSMUST00000044036.15	known	1.00	7.0	0	5;9	0	n	1.00	2.5	0	2;3	0	n	1.00	9.5	0	7;12	0	n	1.00	5.0	0	2;8	0	n	1.00	9.0	0	4;14	0	n	1.00	2.5	0	0;5	0	n	0.67	4.0	2	3;5	2	y	1.00	6.0	0	2;10	0	n	1.00	4.0	0	3;5	0	n	1.00	3.0	0	1;5	0	n	1.00	3.5	0	0;7	0	n	1.00	3.0	0	4;2	0	n	ENSMUSG00000058318.16	Phf21a	chr2	protein_coding	PHD finger protein 21A
known_NIR_11725	chr2	92161153	92174893	+	92161153	92174889	A3SS	ENSMUST00000044036.15	known	0.00	0	18	0	18	n	0.09	2	20	2	20	y	0.00	0	31	0	31	n	0.00	0	16	0	16	n	0.00	0	22	0	22	n	0.00	0	22	0	22	n	0.00	0	20	0	20	n	0.00	0	18	0	18	n	0.00	0	18	0	18	n	0.00	0	12	0	12	n	0.06	1	15	1	15	n	0.00	0	20	0	20	n	ENSMUSG00000058318.16	Phf21a	chr2	protein_coding	PHD finger protein 21A
known_NIR_11726	chr2	92179793;92181976	92181954;92187209	+	92179793;92182209	92182046;92187209	MXE	ENSMUST00000044036.15	known	0.00	0.0	11.0	0;0	12;10	n	0.00	0.0	12.5	0;0	13;12	n	0.00	0.0	19.0	0;0	23;15	n	0.04	0.5	12.0	1;0	9;15	n	0.04	1.0	24.5	2;0	24;25	n	0.14	1.5	9.0	3;0	11;7	n	0.10	2.0	19.0	2;2	14;24	y	0.00	0.0	11.0	0;0	11;11	n	0.00	0.0	14.0	0;0	14;14	n	0.00	0.0	19.5	0;0	14;25	n	0.00	0.0	11.5	0;0	8;15	n	0.00	0.0	13.0	0;0	8;18	n	ENSMUSG00000058318.16	Phf21a	chr2	protein_coding	PHD finger protein 21A
known_NIR_11727	chr2	92206020	92206216	+	92205166	92206216	A5SS	ENSMUST00000155891.8	known	1.00	209	0	209	0	n	0.99	213	2	213	2	y	1.00	164	0	164	0	n	1.00	231	0	231	0	n	1.00	276	0	276	0	n	1.00	118	0	118	0	n	0.99	260	3	260	3	y	1.00	126	0	126	0	n	0.99	194	1	194	1	n	0.99	323	2	323	2	y	0.99	264	2	264	2	y	1.00	212	0	212	0	n	ENSMUSG00000027222.15	Pex16	chr2	protein_coding	peroxisomal biogenesis factor 16
known_NIR_11728	chr2	92207048	92208036	+	92207048;92207908	92207775;92208036	ES	ENSMUST00000155891.8	known	0.01	2	272.0	2	238;306	y	0.01	2	274.0	2	248;300	y	0.00	0	237.5	0	236;239	n	0.00	1	367.5	1	337;398	n	0.01	5	370.5	5	327;414	y	0.02	4	180.0	4	177;183	y	0.01	3	431.5	3	400;463	y	0.02	3	157.0	3	152;162	y	0.02	6	324.5	6	275;374	y	0.01	4	513.5	4	463;564	y	0.00	0	389.0	0	375;403	n	0.01	2	346.5	2	317;376	y	ENSMUSG00000027222.15	Pex16	chr2	protein_coding	peroxisomal biogenesis factor 16
known_NIR_11729	chr2	92209060	92209141	+	92209018	92209141	A5SS	ENSMUST00000155891.8	known	0.01	4	284	4	284	y	0.02	5	229	5	229	y	0.01	3	202	3	202	y	0.01	2	287	2	287	y	0.03	10	319	10	319	y	0.02	3	133	3	133	y	0.01	4	335	4	335	y	0.04	5	133	5	133	y	0.02	4	239	4	239	y	0.02	10	403	10	403	y	0.03	9	321	9	321	y	0.02	8	327	8	327	y	ENSMUSG00000027222.15	Pex16	chr2	protein_coding	peroxisomal biogenesis factor 16
known_NIR_11730	chr2	92257355	92262508	-	92257355	92264157	A5SS	ENSMUST00000090559.12	known	0.04	1	24	1	24	n	0.08	1	12	1	12	n	0.00	0	22	0	22	n	0.11	4	31	4	31	y	0.09	3	30	3	30	y	0.00	0	13	0	13	n	0.13	2	13	2	13	y	0.29	5	12	5	12	y	0.15	3	17	3	17	y	0.00	0	31	0	31	n	0.14	3	18	3	18	y	0.10	3	27	3	27	y	ENSMUSG00000068742.12	Cry2	chr2	protein_coding	cryptochrome 2 (photolyase-like)
known_NIR_11731	chr2	93267815	93292675	-	93267815	93273714	A5SS&ES	ENSMUST00000116457.9	known	0.06	11	182	11	182	y	0.09	14	150	14	150	y	0.07	15	200	15	200	y	0.13	28	180	28	180	y	0.08	19	213	19	213	y	0.09	8	78	8	78	y	0.11	23	186	23	186	y	0.16	18	98	18	98	y	0.06	11	185	11	185	y	0.06	21	310	21	310	y	0.06	12	197	12	197	y	0.11	26	218	26	218	y	ENSMUSG00000027215.14	Cd82	chr2	protein_coding	CD82 antigen
known_NIR_11732	chr2	93267815;93273789	93273714;93292675	-	93267815	93292675	cassetteExon	ENSMUST00000099696.8	known	0.94	171.0	11	182;160	11	y	0.91	139.0	14	150;128	14	y	0.92	174.5	15	200;149	15	y	0.86	169.0	28	180;158	28	y	0.91	189.5	19	213;166	19	y	0.92	87.0	8	78;96	8	y	0.89	178.0	23	186;170	23	y	0.84	96.5	18	98;95	18	y	0.94	163.0	11	185;141	11	y	0.93	276.0	21	310;242	21	y	0.94	180.0	12	197;163	12	y	0.89	204.0	26	218;190	26	y	ENSMUSG00000027215.14	Cd82	chr2	protein_coding	CD82 antigen
known_NIR_11733	chr2	93273789	93292145	-	93273789	93292675	A5SS	ENSMUST00000028644.11	known	0.01	2	160	2	160	y	0.00	0	128	0	128	n	0.00	0	149	0	149	n	0.00	0	158	0	158	n	0.00	0	166	0	166	n	0.00	0	96	0	96	n	0.00	0	170	0	170	n	0.00	0	95	0	95	n	0.00	0	141	0	141	n	0.01	2	242	2	242	y	0.00	0	163	0	163	n	0.00	0	190	0	190	n	ENSMUSG00000027215.14	Cd82	chr2	protein_coding	CD82 antigen
known_NIR_11734	chr2	93537722	93560503	-	93492026	93560503	A3SS	ENSMUST00000184931.8	known	1.00	96	0	96	0	n	1.00	78	0	78	0	n	1.00	86	0	86	0	n	0.97	76	2	76	2	y	0.99	109	1	109	1	n	1.00	39	0	39	0	n	1.00	98	0	98	0	n	1.00	59	0	59	0	n	1.00	47	0	47	0	n	1.00	86	0	86	0	n	1.00	65	0	65	0	n	1.00	79	0	79	0	n	ENSMUSG00000027198.17	Ext2	chr2	protein_coding	exostosin glycosyltransferase 2
known_NIR_11735	chr2	93644309;93652026	93651955;93652732	-	93644309	93652732	cassetteExon	ENSMUST00000028623.13	known	0.14	3.5	21	6;1	21	n	0.29	8.0	20	8;8	20	y	0.23	5.5	18	8;3	18	y	0.26	7.5	21	7;8	21	y	0.28	11.5	29	13;10	29	y	0.35	6.5	12	4;9	12	y	0.29	14.0	34	12;16	34	y	0.46	9.5	11	6;13	11	y	0.31	5.5	12	6;5	12	y	0.32	12.5	27	12;13	27	y	0.27	4.5	12	2;7	12	y	0.14	5.0	31	3;7	31	y	ENSMUSG00000027198.17	Ext2	chr2	protein_coding	exostosin glycosyltransferase 2
known_NIR_11736	chr2	93672307	93673264	-	93672307;93672960	93672894;93673264	ES	ENSMUST00000111246.8	known	0.14	1	6.0	1	6;6	n	0.22	1	3.5	1	4;3	n	0.22	1	3.5	1	3;4	n	0.00	0	2.0	0	2;2	n	0.60	3	2.0	3	3;1	n	0.00	0	3.5	0	2;5	n	0.00	0	4.5	0	5;4	n	0.00	0	1.5	0	1;2	n	0.00	0	1.0	0	0;2	n	0.22	2	7.0	2	4;10	y	0.33	2	4.0	2	5;3	y	0.25	1	3.0	1	2;4	n	ENSMUSG00000040272.15	Accs	chr2	protein_coding	1-aminocyclopropane-1-carboxylate synthase (non-functional)
known_NIR_11737	chr2	93672307	93673264	-	93672960	93673264	3pMXE	ENSMUST00000130077.2	known	0.14	1	6	1	6	n	0.25	1	3	1	3	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.75	3	1	3	1	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.17	2	10	2	10	y	0.40	2	3	2	3	n	0.20	1	4	1	4	n	ENSMUSG00000040272.15	Accs	chr2	protein_coding	1-aminocyclopropane-1-carboxylate synthase (non-functional)
known_NIR_11738	chr2	93826737	93833398	-	93826737;93831858	93831770;93833398	ES	ENSMUST00000111240.8	known	0.08	5	58.5	5	52;65	y	0.02	1	55.5	1	56;55	n	0.00	0	56.5	0	47;66	n	0.05	3	58.5	3	55;62	y	0.04	3	68.5	3	67;70	y	0.03	1	32.5	1	27;38	n	0.03	2	73.0	2	70;76	y	0.03	1	33.0	1	25;41	n	0.04	2	50.0	2	46;54	y	0.08	8	94.0	8	83;105	y	0.06	4	62.5	4	60;65	y	0.06	4	68.0	4	52;84	y	ENSMUSG00000040174.15	Alkbh3	chr2	protein_coding	alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase
known_NIR_11739	chr2	93836182	93837192	-	93835125	93837192	A3SS	ENSMUST00000111240.8	known	0.00	0	58	0	58	n	0.05	2	38	2	38	y	0.05	3	62	3	62	y	0.00	0	45	0	45	n	0.00	0	67	0	67	n	0.00	0	25	0	25	n	0.00	0	59	0	59	n	0.00	0	34	0	34	n	0.03	1	39	1	39	n	0.00	0	76	0	76	n	0.00	0	44	0	44	n	0.00	0	50	0	50	n	ENSMUSG00000040174.15	Alkbh3	chr2	protein_coding	alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase
known_NIR_11740	chr2	93838937	93841028	-	93838937	93840608	5pMXE	ENSMUST00000138046.8	known	0.50	13	13	13	13	y	0.56	24	19	24	19	y	0.43	20	26	20	26	y	0.72	28	11	28	11	y	0.66	41	21	41	21	y	0.74	20	7	20	7	y	0.79	31	8	31	8	y	0.57	13	10	13	10	y	0.54	19	16	19	16	y	0.64	38	21	38	21	y	0.65	26	14	26	14	y	0.57	23	17	23	17	y	ENSMUSG00000040174.15	Alkbh3	chr2	protein_coding	alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase
known_NIR_11741	chr2	93838937;93840753	93840608;93841028	-	93838937	93841028	cassetteExon	ENSMUST00000111240.8	known	0.40	8.5	13	13;4	13	y	0.34	12.5	24	19;6	24	y	0.44	15.5	20	26;5	20	y	0.26	10.0	28	11;9	28	y	0.25	14.0	41	21;7	41	y	0.22	5.5	20	7;4	20	y	0.18	7.0	31	8;6	31	y	0.37	7.5	13	10;5	13	y	0.37	11.0	19	16;6	19	y	0.28	14.5	38	21;8	38	y	0.27	9.5	26	14;5	26	y	0.33	11.5	23	17;6	23	y	ENSMUSG00000040174.15	Alkbh3	chr2	protein_coding	alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase
known_NIR_11742	chr2	93896818	93897025	-	93896818	93913512	A5SS	ENSMUST00000028619.5	known	0.00	0	252	0	252	n	0.00	0	190	0	190	n	0.01	4	494	4	494	y	0.00	0	362	0	362	n	0.00	0	414	0	414	n	0.00	0	261	0	261	n	0.00	0	419	0	419	n	0.00	1	305	1	305	n	0.00	1	293	1	293	n	0.00	0	432	0	432	n	0.00	0	280	0	280	n	0.01	2	330	2	330	y	ENSMUSG00000027195.11	Hsd17b12	chr2	protein_coding	hydroxysteroid (17-beta) dehydrogenase 12
known_NIR_11743	chr2	93913619	93947775	-	93913619;93945413	93945338;93947775	ES	ENSMUST00000028619.5	known	0.00	0	278.5	0	300;257	n	0.00	0	203.5	0	213;194	n	0.00	1	524.5	1	567;482	n	0.01	4	443.0	4	469;417	y	0.01	3	433.5	3	454;413	y	0.00	0	289.5	0	275;304	n	0.00	0	419.0	0	420;418	n	0.00	0	327.5	0	335;320	n	0.00	0	299.0	0	307;291	n	0.00	0	490.0	0	494;486	n	0.00	1	275.5	1	288;263	n	0.00	0	402.0	0	414;390	n	ENSMUSG00000027195.11	Hsd17b12	chr2	protein_coding	hydroxysteroid (17-beta) dehydrogenase 12
known_NIR_11744	chr2	93913619	93947775	-	93945413	93947775	3pMXE	ENSMUST00000141955.2	known	0.00	0	257	0	257	n	0.00	0	194	0	194	n	0.00	1	482	1	482	n	0.01	4	417	4	417	y	0.01	3	413	3	413	y	0.00	0	304	0	304	n	0.00	0	418	0	418	n	0.00	0	320	0	320	n	0.00	0	291	0	291	n	0.00	0	486	0	486	n	0.00	1	263	1	263	n	0.00	0	390	0	390	n	ENSMUSG00000027195.11	Hsd17b12	chr2	protein_coding	hydroxysteroid (17-beta) dehydrogenase 12
known_NIR_11745	chr2	94158830	94160863	-	94157163	94160863	A3SS	ENSMUST00000055081.14	known	0.37	22	38	22	38	y	0.38	24	39	24	39	y	0.41	33	47	33	47	y	0.21	14	52	14	52	y	0.47	32	36	32	36	y	0.41	14	20	14	20	y	0.25	15	46	15	46	y	0.62	29	18	29	18	y	0.27	15	40	15	40	y	0.36	24	42	24	42	y	0.28	16	41	16	41	y	0.30	22	52	22	52	y	ENSMUSG00000027194.17	Ttc17	chr2	protein_coding	tetratricopeptide repeat domain 17
known_NIR_11746	chr2	94163397	94189096	-	94163397;94173142	94172972;94189096	ES	ENSMUST00000055081.14	known	0.15	7	38.5	7	39;38	y	0.00	0	31.0	0	32;30	n	0.03	2	63.5	2	64;63	y	0.00	0	49.0	0	59;39	n	0.00	0	68.0	0	74;62	n	0.05	2	37.0	2	43;31	y	0.09	4	42.5	4	49;36	y	0.02	1	44.5	1	49;40	n	0.00	0	32.0	0	32;32	n	0.05	3	61.0	3	65;57	y	0.04	2	43.5	2	49;38	y	0.00	0	54.0	0	52;56	n	ENSMUSG00000027194.17	Ttc17	chr2	protein_coding	tetratricopeptide repeat domain 17
known_NIR_11747	chr2	94260185	94261952	-	94260185	94268269	A5SS	ENSMUST00000028617.7	known	0.00	0	66	0	66	n	0.00	0	17	0	17	n	0.00	0	91	0	91	n	0.00	0	59	0	59	n	0.00	0	80	0	80	n	0.00	0	33	0	33	n	0.00	0	72	0	72	n	0.00	0	70	0	70	n	0.00	0	54	0	54	n	0.00	0	63	0	63	n	0.04	2	52	2	52	y	0.00	0	75	0	75	n	ENSMUSG00000027193.13	Api5	chr2	protein_coding	apoptosis inhibitor 5
known_NIR_11748	chr3	100067236	100068336	-	100067291	100068336	A3SS	ENSMUST00000052120.14	known	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.14	4	24	4	24	y	0.00	0	14	0	14	n	0.05	1	19	1	19	n	0.00	0	11	0	11	n	0.33	6	12	6	12	y	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.16	3	16	3	16	y	0.00	0	13	0	13	n	0.00	0	15	0	15	n	ENSMUSG00000033285.16	Wdr3	chr3	protein_coding	WD repeat domain 3
known_NIR_11749	chr3	100069981;100076401	100076256;100077252	+	100069981	100077252	cassetteExon	ENSMUST00000029459.10	known	0.00	0.0	18	0;0	18	n	0.00	0.0	12	0;0	12	n	0.01	0.5	64	1;0	64	n	0.04	1.5	39	1;2	39	n	0.01	0.5	40	1;0	40	n	0.03	0.5	17	0;1	17	n	0.01	0.5	39	0;1	39	n	0.03	1.0	28	2;0	28	n	0.03	0.5	16	0;1	16	n	0.02	0.5	31	1;0	31	n	0.06	1.0	17	1;1	17	n	0.11	2.5	20	2;3	20	y	ENSMUSG00000027865.11	Gdap2	chr3	protein_coding	ganglioside-induced differentiation-associated-protein 2
known_NIR_11750	chr3	100539914	100554308	-	100539914;100551937	100551857;100554308	ES	ENSMUST00000008907.14	known	0.00	0	21.5	0	21;22	n	0.18	4	18.5	4	18;19	y	0.02	1	40.5	1	47;34	n	0.00	0	29.5	0	27;32	n	0.00	0	53.0	0	51;55	n	0.00	0	40.5	0	42;39	n	0.00	0	29.0	0	38;20	n	0.02	1	45.0	1	46;44	n	0.00	0	13.5	0	16;11	n	0.02	1	44.5	1	42;47	n	0.00	0	23.0	0	23;23	n	0.08	3	34.5	3	33;36	y	ENSMUSG00000008763.17	Man1a2	chr3	protein_coding	mannosidase, alpha, class 1A, member 2
known_NIR_11751	chr3	100539914	100554308	-	100551937	100554308	3pMXE	ENSMUST00000196250.2	known	0.00	0	22	0	22	n	0.17	4	19	4	19	y	0.03	1	34	1	34	n	0.00	0	32	0	32	n	0.00	0	55	0	55	n	0.00	0	39	0	39	n	0.00	0	20	0	20	n	0.02	1	44	1	44	n	0.00	0	11	0	11	n	0.02	1	47	1	47	n	0.00	0	23	0	23	n	0.08	3	36	3	36	y	ENSMUSG00000008763.17	Man1a2	chr3	protein_coding	mannosidase, alpha, class 1A, member 2
known_NIR_11752	chr3	100551937	100559855	-	100551937	100554308	A5SS&ES	ENSMUST00000196250.2	known	0.08	2	22	2	22	y	0.00	0	19	0	19	n	0.00	0	34	0	34	n	0.00	0	32	0	32	n	0.00	0	55	0	55	n	0.00	0	39	0	39	n	0.00	0	20	0	20	n	0.00	0	44	0	44	n	0.00	0	11	0	11	n	0.00	0	47	0	47	n	0.00	0	23	0	23	n	0.00	0	36	0	36	n	ENSMUSG00000008763.17	Man1a2	chr3	protein_coding	mannosidase, alpha, class 1A, member 2
known_NIR_11753	chr3	100551937	100559855	-	100551937;100554426	100554308;100559855	ES	ENSMUST00000008907.14	known	0.08	2	24.0	2	22;26	y	0.00	0	20.0	0	19;21	n	0.00	0	53.5	0	34;73	n	0.00	0	32.0	0	32;32	n	0.00	0	56.0	0	55;57	n	0.00	0	43.5	0	39;48	n	0.00	0	25.5	0	20;31	n	0.00	0	43.0	0	44;42	n	0.00	0	15.0	0	11;19	n	0.00	0	48.0	0	47;49	n	0.00	0	28.0	0	23;33	n	0.00	0	37.5	0	36;39	n	ENSMUSG00000008763.17	Man1a2	chr3	protein_coding	mannosidase, alpha, class 1A, member 2
known_NIR_11754	chr3	100837259;100837394	100837342;100838747	+	100837259	100838747	cassetteExon	ENSMUST00000094048.10	known	0.00	0.0	10	0;0	10	n	0.00	0.0	2	0;0	2	n	0.00	0.0	3	0;0	3	n	0.00	0.0	2	0;0	2	n	0.00	0.0	6	0;0	6	n	0.00	0.0	1	0;0	1	n	1.00	1.5	0	1;2	0	n	0.40	4.0	6	4;4	6	y	0.00	0.0	1	0;0	1	n	0.33	1.0	2	2;0	2	n	0.00	0.0	1	0;0	1	n	0.00	0.0	5	0;0	5	n	ENSMUSG00000033233.18	Trim45	chr3	protein_coding	tripartite motif-containing 45
known_NIR_11755	chr3	101787503	101790776	-	101787540	101790776	A3SS	ENSMUST00000106928.10	known	0.17	1	5	1	5	n	0.17	2	10	2	10	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.18	2	9	2	9	y	0.00	0	3	0	3	n	0.45	5	6	5	6	y	0.00	0	9	0	9	n	0.17	1	5	1	5	n	0.09	1	10	1	10	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000033147.17	Slc22a15	chr3	protein_coding	solute carrier family 22 (organic anion/cation transporter), member 15
known_NIR_11756	chr3	101829815	101831348	-	101822833	101831348	A3SS	ENSMUST00000106928.10	known	0.77	24	7	24	7	y	0.84	16	3	16	3	y	0.92	24	2	24	2	y	0.96	25	1	25	1	n	0.87	41	6	41	6	y	0.67	18	9	18	9	y	0.94	45	3	45	3	y	0.71	17	7	17	7	y	0.84	16	3	16	3	y	0.81	29	7	29	7	y	0.88	14	2	14	2	y	0.95	19	1	19	1	n	ENSMUSG00000033147.17	Slc22a15	chr3	protein_coding	solute carrier family 22 (organic anion/cation transporter), member 15
known_NIR_11757	chr3	102072803	102074154	-	102072803	102073089	5pMXE	ENSMUST00000162361.2	known	1.00	11	0	11	0	n	1.00	6	0	6	0	n	0.65	13	7	13	7	y	1.00	15	0	15	0	n	0.86	25	4	25	4	y	0.88	15	2	15	2	y	0.90	9	1	9	1	n	0.92	11	1	11	1	n	0.92	12	1	12	1	n	0.92	12	1	12	1	n	0.83	5	1	5	1	n	1.00	15	0	15	0	n	ENSMUSG00000027860.16	Vangl1	chr3	protein_coding	VANGL planar cell polarity 1
known_NIR_11758	chr3	102072803;102073127	102073089;102074154	-	102072803	102074154	cassetteExon	ENSMUST00000029453.13	known	0.04	0.5	11	0;1	11	n	0.00	0.0	6	0;0	6	n	0.35	7.0	13	7;7	13	y	0.06	1.0	15	0;2	15	n	0.12	3.5	25	4;3	25	y	0.06	1.0	15	2;0	15	n	0.10	1.0	9	1;1	9	n	0.04	0.5	11	1;0	11	n	0.08	1.0	12	1;1	12	n	0.11	1.5	12	1;2	12	n	0.17	1.0	5	1;1	5	n	0.00	0.0	15	0;0	15	n	ENSMUSG00000027860.16	Vangl1	chr3	protein_coding	VANGL planar cell polarity 1
known_NIR_11759	chr3	102928207	102936105	+	102927985	102936105	A5SS	ENSMUST00000029446.13	known	0.00	0	88	0	88	n	0.00	0	38	0	38	n	0.00	0	177	0	177	n	0.02	2	114	2	114	y	0.00	0	108	0	108	n	0.00	0	88	0	88	n	0.00	0	144	0	144	n	0.00	0	85	0	85	n	0.00	0	55	0	55	n	0.00	0	139	0	139	n	0.00	0	55	0	55	n	0.00	0	142	0	142	n	ENSMUSG00000068823.11	Csde1	chr3	protein_coding	cold shock domain containing E1, RNA binding
known_NIR_11760	chr3	102936528;102944037	102943891;102946008	+	102936528	102946008	cassetteExon	ENSMUST00000029446.13	known	0.01	1.0	90	0;2	90	n	0.01	0.5	76	1;0	76	n	0.04	7.5	164	6;9	164	y	0.01	1.0	138	0;2	138	n	0.01	2.0	176	3;1	176	n	0.03	2.0	75	2;2	75	y	0.19	29.0	123	22;36	123	y	0.01	0.5	99	0;1	99	n	0.00	0.0	81	0;0	81	n	0.00	0.5	132	1;0	132	n	0.01	1.0	98	0;2	98	n	0.01	2.0	138	0;4	138	n	ENSMUSG00000068823.11	Csde1	chr3	protein_coding	cold shock domain containing E1, RNA binding
known_NIR_11761	chr3	102937596	102946008	+	102936528	102946008	A5SS	ENSMUST00000029446.13	known	0.00	0	90	0	90	n	0.00	0	76	0	76	n	0.00	0	164	0	164	n	0.00	0	138	0	138	n	0.01	1	176	1	176	n	0.00	0	75	0	75	n	0.00	0	123	0	123	n	0.02	2	99	2	99	y	0.00	0	81	0	81	n	0.01	2	132	2	132	y	0.00	0	98	0	98	n	0.00	0	138	0	138	n	ENSMUSG00000068823.11	Csde1	chr3	protein_coding	cold shock domain containing E1, RNA binding
known_NIR_11762	chr3	102947103	102947249	+	102946206	102947249	A5SS	ENSMUST00000029446.13	known	0.00	0	88	0	88	n	0.02	1	52	1	52	n	0.00	0	184	0	184	n	0.00	0	155	0	155	n	0.00	0	164	0	164	n	0.03	3	98	3	98	y	0.00	0	158	0	158	n	0.00	0	79	0	79	n	0.00	0	91	0	91	n	0.00	0	145	0	145	n	0.00	0	84	0	84	n	0.00	0	162	0	162	n	ENSMUSG00000068823.11	Csde1	chr3	protein_coding	cold shock domain containing E1, RNA binding
known_NIR_11763	chr3	102947358	102948461	+	102947358;102947849	102947757;102948461	ES	ENSMUST00000029446.13	known	0.83	128	26.5	128	26;27	y	0.84	71	13.5	71	14;13	y	0.90	222	26.0	222	25;27	y	0.82	181	41.0	181	32;50	y	0.82	193	42.5	193	35;50	y	0.84	114	21.5	114	24;19	y	0.80	172	43.5	172	42;45	y	0.81	113	26.5	113	18;35	y	0.81	129	30.0	129	33;27	y	0.87	163	23.5	163	13;34	y	0.80	107	27.5	107	28;27	y	0.85	210	37.5	210	34;41	y	ENSMUSG00000068823.11	Csde1	chr3	protein_coding	cold shock domain containing E1, RNA binding
known_NIR_11764	chr3	102951247	102951894	+	102951247	102951945	A3SS	ENSMUST00000029446.13	known	0.00	0	173	0	173	n	0.00	0	155	0	155	n	0.00	1	314	1	314	n	0.00	0	242	0	242	n	0.00	0	337	0	337	n	0.01	1	131	1	131	n	0.00	0	306	0	306	n	0.01	2	168	2	168	y	0.01	1	180	1	180	n	0.00	0	304	0	304	n	0.00	0	174	0	174	n	0.00	1	311	1	311	n	ENSMUSG00000068823.11	Csde1	chr3	protein_coding	cold shock domain containing E1, RNA binding
known_NIR_11765	chr3	102951247	102952075	+	102951247	102951945	A3SS	ENSMUST00000029446.13	known	0.00	0	173	0	173	n	0.00	0	155	0	155	n	0.00	0	314	0	314	n	0.01	2	242	2	242	y	0.02	8	337	8	337	y	0.00	0	131	0	131	n	0.00	0	306	0	306	n	0.00	0	168	0	168	n	0.02	4	180	4	180	y	0.00	0	304	0	304	n	0.00	0	174	0	174	n	0.02	7	311	7	311	y	ENSMUSG00000068823.11	Csde1	chr3	protein_coding	cold shock domain containing E1, RNA binding
known_NIR_11766	chr3	102966348;102967350	102967255;102967517	+	102966348	102967517	cassetteExon	ENSMUST00000029445.13	known	0.00	0.0	47	0;0	47	n	0.00	0.0	41	0;0	41	n	0.02	2.0	100	2;2	100	y	0.02	1.0	51	1;1	51	n	0.00	0.0	62	0;0	62	n	0.00	0.0	42	0;0	42	n	0.02	1.5	68	3;0	68	n	0.00	0.0	42	0;0	42	n	0.00	0.0	25	0;0	25	n	0.00	0.0	75	0;0	75	n	0.00	0.0	32	0;0	32	n	0.00	0.0	79	0;0	79	n	ENSMUSG00000027852.15	Nras	chr3	protein_coding	neuroblastoma ras oncogene
known_NIR_11767	chr3	102970769	102971550	+	102970769;102971473	102971432;102971550	ES	ENSMUST00000029445.13	known	0.09	4	40.0	4	37;43	y	0.06	2	32.0	2	31;33	y	0.03	2	76.5	2	77;76	y	0.04	2	48.5	2	46;51	y	0.04	3	69.0	3	71;67	y	0.04	2	51.5	2	52;51	y	0.01	1	76.5	1	77;76	n	0.00	0	42.5	0	46;39	n	0.02	1	40.0	1	39;41	n	0.00	0	53.0	0	50;56	n	0.00	0	52.5	0	54;51	n	0.00	0	63.5	0	71;56	n	ENSMUSG00000027852.15	Nras	chr3	protein_coding	neuroblastoma ras oncogene
known_NIR_11768	chr3	102981433	102986345	+	102981433;102982734	102982723;102986345	ES	ENSMUST00000090715.13	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.53	5	4.5	5	3;6	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000070385.13	Ampd1	chr3	protein_coding	adenosine monophosphate deaminase 1
known_NIR_11769	chr3	103259471	103261013	+	103259471	103260883	A3SS	ENSMUST00000197365.2	known	0.37	7	12	7	12	y	0.65	13	7	13	7	y	0.38	15	25	15	25	y	0.31	10	22	10	22	y	0.29	10	24	10	24	y	0.50	4	4	4	4	n	0.23	8	27	8	27	y	0.22	4	14	4	14	y	0.25	4	12	4	12	y	0.25	9	27	9	27	y	0.47	7	8	7	8	y	0.23	6	20	6	20	y	ENSMUSG00000033014.13	Trim33	chr3	protein_coding	tripartite motif-containing 33
known_NIR_11770	chr3	103259471	103261013	+	103259471;103260933	103260883;103261013	ES	ENSMUST00000029444.13	known	0.37	7	12.0	7	12;12	y	0.63	13	7.5	13	7;8	y	0.36	15	26.5	15	25;28	y	0.31	10	22.5	10	22;23	y	0.31	10	22.5	10	24;21	y	0.38	4	6.5	4	4;9	y	0.24	8	25.0	8	27;23	y	0.24	4	13.0	4	14;12	y	0.24	4	13.0	4	12;14	y	0.25	9	26.5	9	27;26	y	0.48	7	7.5	7	8;7	y	0.24	6	19.5	6	20;19	y	ENSMUSG00000033014.13	Trim33	chr3	protein_coding	tripartite motif-containing 33
known_NIR_11771	chr3	103711361	103714710	-	103711371	103714710	A3SS	ENSMUST00000063502.13	known	0.10	1	9	1	9	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	18	0	18	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.14	2	12	2	12	y	ENSMUSG00000027845.16	Dclre1b	chr3	protein_coding	DNA cross-link repair 1B
known_NIR_11772	chr3	103714892	103716216	-	103714892	103715388	A5SS	ENSMUST00000147894.3	known	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	17	0	17	n	0.18	2	9	2	9	y	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	ENSMUSG00000027845.16	Dclre1b	chr3	protein_coding	DNA cross-link repair 1B
known_NIR_11773	chr3	103714892;103715553	103715388;103716216	-	103714892	103716216	cassetteExon	ENSMUST00000063502.13	known	1.00	6.0	0	7;5	0	n	1.00	9.0	0	11;7	0	n	1.00	6.5	0	5;8	0	n	1.00	5.5	0	7;4	0	n	1.00	13.0	0	17;9	0	n	0.80	8.0	2	9;7	2	y	1.00	9.0	0	9;9	0	n	1.00	4.5	0	4;5	0	n	1.00	5.0	0	5;5	0	n	1.00	8.5	0	10;7	0	n	1.00	7.0	0	9;5	0	n	1.00	6.5	0	6;7	0	n	ENSMUSG00000027845.16	Dclre1b	chr3	protein_coding	DNA cross-link repair 1B
known_NIR_11774	chr3	103725159	103727570	+	103725159;103726223	103726120;103727570	ES	ENSMUST00000076599.8	known	0.06	3	46.0	3	44;48	y	0.00	0	39.5	0	47;32	n	0.00	0	46.0	0	43;49	n	0.00	0	51.0	0	54;48	n	0.05	3	56.0	3	55;57	y	0.00	0	36.0	0	47;25	n	0.03	2	56.5	2	47;66	y	0.00	0	28.0	0	27;29	n	0.03	1	32.5	1	26;39	n	0.00	0	65.0	0	63;67	n	0.06	2	33.0	2	26;40	y	0.00	0	38.0	0	35;41	n	ENSMUSG00000032952.12	Ap4b1	chr3	protein_coding	adaptor-related protein complex AP-4, beta 1
known_NIR_11775	chr3	10381314	10387964	-	10381314;10386780	10386672;10387964	ES	ENSMUST00000065938.15	known	0.01	2	207.0	2	205;209	y	0.02	4	183.0	4	182;184	y	0.05	10	176.5	10	175;178	y	0.01	3	266.0	3	270;262	y	0.02	6	264.5	6	266;263	y	0.01	1	100.0	1	97;103	n	0.00	0	274.5	0	288;261	n	0.00	0	127.0	0	128;126	n	0.01	3	217.0	3	223;211	y	0.01	3	317.0	3	322;312	y	0.02	6	235.0	6	235;235	y	0.02	6	268.5	6	277;260	y	ENSMUSG00000027531.17	Impa1	chr3	protein_coding	inositol (myo)-1(or 4)-monophosphatase 1
known_NIR_11776	chr3	10381314	10387964	-	10386780	10387964	3pMXE	ENSMUST00000192603.2	known	0.01	2	209	2	209	y	0.02	4	184	4	184	y	0.05	10	178	10	178	y	0.01	3	262	3	262	y	0.02	6	263	6	263	y	0.01	1	103	1	103	n	0.00	0	261	0	261	n	0.00	0	126	0	126	n	0.01	3	211	3	211	y	0.01	3	312	3	312	y	0.02	6	235	6	235	y	0.02	6	260	6	260	y	ENSMUSG00000103392.2	Gm38303	chr3	protein_coding	predicted gene, 38303
known_NIR_11777	chr3	103876446	103889202	+	103876446;103877126	103877070;103889202	ES	ENSMUST00000117150.8	known	0.50	2	2.0	2	1;3	n	0.00	0	2.0	0	1;3	n	0.27	2	5.5	2	3;8	y	0.55	6	5.0	6	5;5	y	0.36	2	3.5	2	4;3	n	0.67	1	0.5	1	0;1	n	0.00	0	3.0	0	2;4	n	0.00	0	2.5	0	1;4	n	0.44	2	2.5	2	3;2	n	0.00	0	5.0	0	8;2	n	0.36	2	3.5	2	3;4	n	0.22	1	3.5	1	2;5	n	ENSMUSG00000058388.15	Phtf1	chr3	protein_coding	putative homeodomain transcription factor 1
known_NIR_11778	chr3	103889271	103893069	+	103889271;103890420	103890262;103893069	ES	ENSMUST00000117150.8	known	0.17	2	9.5	2	14;5	y	0.15	1	5.5	1	5;6	n	0.00	0	8.5	0	12;5	n	0.18	1	4.5	1	6;3	n	0.00	0	7.0	0	7;7	n	0.00	0	5.0	0	5;5	n	0.22	2	7.0	2	8;6	y	0.00	0	2.0	0	3;1	n	0.12	1	7.5	1	12;3	n	0.22	1	3.5	1	3;4	n	0.00	0	5.0	0	8;2	n	0.00	0	5.5	0	4;7	n	ENSMUSG00000058388.15	Phtf1	chr3	protein_coding	putative homeodomain transcription factor 1
known_NIR_11779	chr3	103893225	103895931	+	103893225	103894743	3pMXE	ENSMUST00000156262.8	known	0.12	1	7	1	7	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.08	1	12	1	12	n	0.27	3	8	3	8	y	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.12	1	7	1	7	n	0.20	2	8	2	8	y	ENSMUSG00000058388.15	Phtf1	chr3	protein_coding	putative homeodomain transcription factor 1
known_NIR_11780	chr3	103893225	103895931	+	103893225;103894877	103894743;103895931	ES	ENSMUST00000117150.8	known	0.13	1	6.5	1	7;6	n	0.00	0	4.5	0	4;5	n	0.00	0	5.5	0	3;8	n	0.09	1	10.0	1	12;8	n	0.24	3	9.5	3	8;11	y	0.00	0	4.5	0	3;6	n	0.00	0	9.5	0	12;7	n	0.00	0	6.0	0	8;4	n	0.00	0	2.5	0	4;1	n	0.00	0	7.0	0	8;6	n	0.13	1	6.5	1	7;6	n	0.20	2	8.0	2	8;8	y	ENSMUSG00000058388.15	Phtf1	chr3	protein_coding	putative homeodomain transcription factor 1
known_NIR_11781	chr3	103923384	103924817	-	103924008	103924817	3pMXE	ENSMUST00000122303.2	known	0.89	17	2	17	2	y	0.80	16	4	16	4	y	0.96	26	1	26	1	n	0.86	18	3	18	3	y	0.98	42	1	42	1	n	0.95	20	1	20	1	n	0.52	15	14	15	14	y	0.79	19	5	19	5	y	1.00	36	0	36	0	n	0.76	16	5	16	5	y	0.77	17	5	17	5	y	0.93	27	2	27	2	y	ENSMUSG00000052539.16	Magi3	chr3	protein_coding	membrane associated guanylate kinase, WW and PDZ domain containing 3
known_NIR_11782	chr3	10394068	10396140	-	10394068	10396382	A5SS	ENSMUST00000065938.15	known	0.00	0	134	0	134	n	0.00	0	90	0	90	n	0.00	0	122	0	122	n	0.03	5	156	5	156	y	0.03	6	192	6	192	y	0.02	1	52	1	52	n	0.03	5	143	5	143	y	0.04	2	52	2	52	y	0.01	1	121	1	121	n	0.03	7	195	7	195	y	0.01	1	122	1	122	n	0.02	4	180	4	180	y	ENSMUSG00000027531.17	Impa1	chr3	protein_coding	inositol (myo)-1(or 4)-monophosphatase 1
known_NIR_11783	chr3	10406205	10409861	-	10406209	10409861	A3SS	ENSMUST00000037839.12	known	0.06	4	64	4	64	y	0.12	7	52	7	52	y	0.00	0	47	0	47	n	0.00	0	70	0	70	n	0.00	0	81	0	81	n	0.00	0	27	0	27	n	0.08	6	68	6	68	y	0.00	0	44	0	44	n	0.00	0	54	0	54	n	0.00	0	104	0	104	n	0.00	0	48	0	48	n	0.00	0	66	0	66	n	ENSMUSG00000039795.15	Zfand1	chr3	protein_coding	zinc finger, AN1-type domain 1
known_NIR_11784	chr3	10412471	10413570	-	10412264	10413570	A3SS	ENSMUST00000037839.12	known	0.14	9	56	9	56	y	0.17	8	39	8	39	y	0.06	2	33	2	33	y	0.16	8	41	8	41	y	0.11	7	55	7	55	y	0.07	3	37	3	37	y	0.16	11	58	11	58	y	0.07	3	39	3	39	y	0.23	11	36	11	36	y	0.16	12	65	12	65	y	0.03	2	56	2	56	y	0.12	11	78	11	78	y	ENSMUSG00000039795.15	Zfand1	chr3	protein_coding	zinc finger, AN1-type domain 1
known_NIR_11785	chr3	10413612	10416229	-	10413612	10416302	A5SS	ENSMUST00000037839.12	known	0.02	1	52	1	52	n	0.00	0	28	0	28	n	0.00	0	32	0	32	n	0.05	2	39	2	39	y	0.02	1	54	1	54	n	0.13	4	27	4	27	y	0.00	0	64	0	64	n	0.00	0	33	0	33	n	0.00	0	51	0	51	n	0.03	2	70	2	70	y	0.12	5	37	5	37	y	0.00	0	78	0	78	n	ENSMUSG00000039795.15	Zfand1	chr3	protein_coding	zinc finger, AN1-type domain 1
known_NIR_11786	chr3	104696417	104699205	+	104696399	104699205	A5SS	ENSMUST00000002303.12	known	0.10	2	19	2	19	y	0.00	0	27	0	27	n	0.03	3	96	3	96	y	0.00	0	16	0	16	n	0.07	4	51	4	51	y	0.02	1	41	1	41	n	0.02	1	47	1	47	n	0.05	1	18	1	18	n	0.00	0	23	0	23	n	0.00	0	31	0	31	n	0.09	2	20	2	20	y	0.00	0	35	0	35	n	ENSMUSG00000002233.14	Rhoc	chr3	protein_coding	ras homolog family member C
known_NIR_11787	chr3	104700346	104701227	+	104700346	104701186	A3SS	ENSMUST00000196817.5	known	0.00	0	57	0	57	n	0.00	0	71	0	71	n	0.00	0	173	0	173	n	0.00	0	34	0	34	n	0.00	0	94	0	94	n	0.00	0	71	0	71	n	0.00	0	130	0	130	n	0.00	0	43	0	43	n	0.00	0	25	0	25	n	0.06	4	68	4	68	y	0.00	0	45	0	45	n	0.00	0	69	0	69	n	ENSMUSG00000002233.14	Rhoc	chr3	protein_coding	ras homolog family member C
known_NIR_11788	chr3	104742120	104748144	-	104742120;104747304	104747098;104748144	ES	ENSMUST00000094028.10	known	0.02	1	45.5	1	45;46	n	0.03	1	28.0	1	31;25	n	0.00	0	90.0	0	83;97	n	0.01	1	66.0	1	52;80	n	0.01	1	74.5	1	65;84	n	0.00	0	38.0	0	35;41	n	0.04	3	71.0	3	63;79	y	0.00	0	47.5	0	39;56	n	0.03	1	30.0	1	25;35	n	0.00	0	65.5	0	54;77	n	0.08	3	35.5	3	28;43	y	0.00	0	67.0	0	68;66	n	ENSMUSG00000070372.12	Capza1	chr3	protein_coding	capping protein (actin filament) muscle Z-line, alpha 1
known_NIR_11789	chr3	104742120	104748144	-	104747304	104748144	3pMXE	ENSMUST00000196924.2	known	0.02	1	46	1	46	n	0.04	1	25	1	25	n	0.00	0	97	0	97	n	0.01	1	80	1	80	n	0.01	1	84	1	84	n	0.00	0	41	0	41	n	0.04	3	79	3	79	y	0.00	0	56	0	56	n	0.03	1	35	1	35	n	0.00	0	77	0	77	n	0.07	3	43	3	43	y	0.00	0	66	0	66	n	ENSMUSG00000070372.12	Capza1	chr3	protein_coding	capping protein (actin filament) muscle Z-line, alpha 1
known_NIR_11790	chr3	104772890	104775340	+	104772624	104775340	A5SS	ENSMUST00000106769.8	known	0.00	0	43	0	43	n	0.00	0	24	0	24	n	0.04	2	44	2	44	y	0.00	0	51	0	51	n	0.00	0	69	0	69	n	0.00	0	52	0	52	n	0.00	0	53	0	53	n	0.03	1	38	1	38	n	0.00	0	38	0	38	n	0.02	1	53	1	53	n	0.00	0	39	0	39	n	0.00	0	58	0	58	n	ENSMUSG00000045576.17	St7l	chr3	protein_coding	suppression of tumorigenicity 7-like
known_NIR_11791	chr3	104782258	104788240	+	104782258	104798780	A3SS	ENSMUST00000200132.5	known	0.64	7	4	7	4	y	1.00	1	0	1	0	n	0.60	3	2	3	2	n	1.00	7	0	7	0	n	0.75	9	3	9	3	y	1.00	2	0	2	0	n	0.77	10	3	10	3	y	0.50	4	4	4	4	n	0.71	5	2	5	2	n	0.78	7	2	7	2	n	1.00	8	0	8	0	n	0.60	6	4	6	4	y	ENSMUSG00000045576.17	St7l	chr3	protein_coding	suppression of tumorigenicity 7-like
known_NIR_11792	chr3	104782258;104788279	104788240;104790109	+	104782258	104790109	cassetteExon	ENSMUST00000106769.8	known	0.10	5.5	47	7;4	47	y	0.01	0.5	43	1;0	43	n	0.04	2.5	67	3;2	67	y	0.07	5.5	77	7;4	77	y	0.13	9.0	59	9;9	59	y	0.05	2.0	40	2;2	40	y	0.15	9.0	52	10;8	52	y	0.06	4.0	61	4;4	61	y	0.11	4.5	35	5;4	35	y	0.07	5.0	68	7;3	68	y	0.09	6.0	59	8;4	59	y	0.13	6.0	41	6;6	41	y	ENSMUSG00000045576.17	St7l	chr3	protein_coding	suppression of tumorigenicity 7-like
known_NIR_11793	chr3	104796756	104798780	+	104782258	104798780	A5SS	ENSMUST00000200132.5	known	0.95	80	4	80	4	y	1.00	61	0	61	0	n	0.98	95	2	95	2	y	1.00	61	0	61	0	n	0.97	101	3	101	3	y	1.00	38	0	38	0	n	0.96	66	3	66	3	y	0.92	48	4	48	4	y	0.97	68	2	68	2	y	0.97	75	2	75	2	y	1.00	58	0	58	0	n	0.95	78	4	78	4	y	ENSMUSG00000045576.17	St7l	chr3	protein_coding	suppression of tumorigenicity 7-like
known_NIR_11794	chr3	104803114	104826667	+	104803114	104826763	A3SS	ENSMUST00000106769.8	known	0.98	65	1	65	1	n	1.00	52	0	52	0	n	0.94	76	5	76	5	y	0.97	60	2	60	2	y	0.97	84	3	84	3	y	0.97	62	2	62	2	y	1.00	81	0	81	0	n	0.96	45	2	45	2	y	0.94	48	3	48	3	y	0.98	64	1	64	1	n	0.95	81	4	81	4	y	1.00	71	0	71	0	n	ENSMUSG00000045576.17	St7l	chr3	protein_coding	suppression of tumorigenicity 7-like
known_NIR_11795	chr3	10484283;10485376	10485257;10485800	-	10484283	10485800	cassetteExon	ENSMUST00000099223.11	known	0.87	13.5	2	13;14	2	y	0.75	3.0	1	3;3	1	n	0.94	15.0	1	17;13	1	n	1.00	6.0	0	6;6	0	n	0.87	13.5	2	14;13	2	y	0.71	7.5	3	5;10	3	y	0.77	10.0	3	11;9	3	y	0.90	9.0	1	8;10	1	n	1.00	1.5	0	1;2	0	n	0.68	10.5	5	12;9	5	y	1.00	6.0	0	7;5	0	n	0.79	7.5	2	9;6	2	y	ENSMUSG00000027534.17	Snx16	chr3	protein_coding	sorting nexin 16
known_NIR_11796	chr3	105639387;105642495	105642381;105645071	-	105639387	105645071	cassetteExon	ENSMUST00000090678.11	known	0.00	0.0	265	0;0	265	n	0.00	0.0	210	0;0	210	n	0.00	1.0	246	0;2	246	n	0.00	0.0	257	0;0	257	n	0.02	5.0	304	3;7	304	y	0.01	2.0	138	2;2	138	y	0.00	0.5	333	1;0	333	n	0.01	1.0	149	2;0	149	n	0.00	0.0	211	0;0	211	n	0.00	0.5	276	1;0	276	n	0.00	0.0	224	0;0	224	n	0.00	1.0	333	2;0	333	n	ENSMUSG00000068798.11	Rap1a	chr3	protein_coding	RAS-related protein 1a
known_NIR_11797	chr3	105657644;105701455	105701371;105708555	-	105657644	105708555	cassetteExon	ENSMUST00000090678.11	known	0.01	1.0	68	1;1	68	n	0.01	0.5	57	1;0	57	n	0.01	1.0	104	1;1	104	n	0.01	1.0	71	1;1	71	n	0.02	2.5	106	5;0	106	n	0.00	0.0	47	0;0	47	n	0.02	1.5	70	3;0	70	n	0.00	0.0	50	0;0	50	n	0.04	2.5	58	3;2	58	y	0.04	3.0	81	5;1	81	n	0.00	0.0	71	0;0	71	n	0.02	1.5	90	2;1	90	n	ENSMUSG00000068798.11	Rap1a	chr3	protein_coding	RAS-related protein 1a
known_NIR_11798	chr3	105850379	105858907	-	105850379;105851182	105851003;105858907	ES	ENSMUST00000118209.8	known	0.00	0	1335.5	0	1550;1121	n	0.00	0	1411.5	0	1668;1155	n	0.00	0	1138.0	0	1275;1001	n	0.00	0	1347.5	0	1580;1115	n	0.00	0	1508.0	0	1687;1329	n	0.00	0	659.0	0	704;614	n	0.00	1	1835.5	1	2129;1542	n	0.00	0	705.0	0	732;678	n	0.00	3	1358.0	3	1586;1130	y	0.00	1	1988.5	1	2266;1711	n	0.00	0	1744.5	0	2028;1461	n	0.00	0	1910.0	0	2200;1620	n	ENSMUSG00000000563.18	Atp5pb	chr3	protein_coding	ATP synthase peripheral stalk-membrane subunit b
known_NIR_11799	chr3	105867003	105867269	+	105867014	105867269	A5SS	ENSMUST00000010278.12	known	0.00	0	41	0	41	n	0.00	0	25	0	25	n	0.00	0	72	0	72	n	0.00	0	60	0	60	n	0.03	2	59	2	59	y	0.00	0	30	0	30	n	0.00	0	32	0	32	n	0.00	0	52	0	52	n	0.00	0	26	0	26	n	0.00	0	52	0	52	n	0.00	0	38	0	38	n	0.00	0	50	0	50	n	ENSMUSG00000000561.15	Wdr77	chr3	protein_coding	WD repeat domain 77
known_NIR_11800	chr3	105873172	105873673	+	105873189	105873673	A5SS	ENSMUST00000010278.12	known	0.06	3	48	3	48	y	0.06	3	49	3	49	y	0.05	6	118	6	118	y	0.05	3	54	3	54	y	0.09	9	93	9	93	y	0.02	1	62	1	62	n	0.05	4	76	4	76	y	0.00	0	65	0	65	n	0.06	4	59	4	59	y	0.09	6	60	6	60	y	0.04	3	71	3	71	y	0.06	4	61	4	61	y	ENSMUSG00000000561.15	Wdr77	chr3	protein_coding	WD repeat domain 77
known_NIR_11801	chr3	106395279	106395845	+	106395279	106395888	A3SS	ENSMUST00000139062.8	known	0.00	0	7	0	7	n	0.12	1	7	1	7	n	0.25	2	6	2	6	n	0.09	1	10	1	10	n	0.00	0	14	0	14	n	0.25	2	6	2	6	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.08	1	12	1	12	n	0.12	2	14	2	14	y	0.22	2	7	2	7	n	0.11	1	8	1	8	n	ENSMUSG00000027901.13	Dennd2d	chr3	protein_coding	DENN/MADD domain containing 2D
known_NIR_11802	chr3	106413168;106427395	106427325;106440671	-	106413168;106438594	106420119;106440671	MXE	ENSMUST00000068301.11	known	0.35	42.5	77.5	85;0	13;142	n	0.35	30.5	57.5	61;0	10;105	n	0.38	43.5	70.5	85;2	18;123	y	0.40	50.0	74.0	100;0	2;146	n	0.37	73.0	126.0	146;0	24;228	n	0.36	25.5	46.0	51;0	2;90	n	0.40	73.0	108.0	146;0	17;199	n	0.47	35.5	40.0	71;0	6;74	n	0.40	38.5	58.0	76;1	6;110	n	0.43	67.0	90.0	134;0	5;175	n	0.39	46.0	72.5	92;0	6;139	n	0.43	76.5	101.0	153;0	11;191	n	ENSMUSG00000040774.16	Cept1	chr3	protein_coding	choline/ethanolaminephosphotransferase 1
known_NIR_11803	chr3	106413168;106427409	106427325;106438453	-	106413168;106420203	106420119;106438453	MXE	ENSMUST00000068301.11	known	0.88	108.5	14.5	85;132	13;16	y	0.91	83.5	8.5	61;106	10;7	y	0.84	87.0	17.0	85;89	18;16	y	0.98	112.0	2.0	100;124	2;2	y	0.88	164.5	22.0	146;183	24;20	y	0.91	48.0	4.5	51;45	2;7	y	0.89	155.0	20.0	146;164	17;23	y	0.95	63.0	3.5	71;55	6;1	n	0.93	78.0	6.0	76;80	6;6	y	0.97	138.0	4.5	134;142	5;4	y	0.93	92.5	7.5	92;93	6;9	y	0.94	182.0	11.0	153;211	11;11	y	ENSMUSG00000040774.16	Cept1	chr3	protein_coding	choline/ethanolaminephosphotransferase 1
known_NIR_11804	chr3	106427395	106440671	-	106438594	106440671	A3SS&ES	ENSMUST00000039153.14	known	0.00	0	142	0	142	n	0.00	0	105	0	105	n	0.02	2	123	2	123	y	0.00	0	146	0	146	n	0.00	0	228	0	228	n	0.00	0	90	0	90	n	0.00	0	199	0	199	n	0.00	0	74	0	74	n	0.01	1	110	1	110	n	0.00	0	175	0	175	n	0.00	0	139	0	139	n	0.00	0	191	0	191	n	ENSMUSG00000040774.16	Cept1	chr3	protein_coding	choline/ethanolaminephosphotransferase 1
known_NIR_11805	chr3	106440818	106446759	-	106440818	106446506	A5SS	ENSMUST00000068301.11	known	0.09	11	112	11	112	y	0.12	10	70	10	70	y	0.07	8	112	8	112	y	0.09	12	125	12	125	y	0.07	13	182	13	182	y	0.13	6	40	6	40	y	0.00	0	143	0	143	n	0.00	0	79	0	79	n	0.00	0	88	0	88	n	0.06	9	150	9	150	y	0.00	0	116	0	116	n	0.07	11	154	11	154	y	ENSMUSG00000040774.16	Cept1	chr3	protein_coding	choline/ethanolaminephosphotransferase 1
known_NIR_11806	chr3	106446919	106454692	-	106446919	106454996	A5SS	ENSMUST00000068301.11	known	0.03	2	62	2	62	y	0.09	3	30	3	30	y	0.00	0	59	0	59	n	0.00	0	45	0	45	n	0.12	12	88	12	88	y	0.02	1	40	1	40	n	0.11	9	74	9	74	y	0.07	3	38	3	38	y	0.04	2	44	2	44	y	0.02	1	64	1	64	n	0.15	7	40	7	40	y	0.06	4	68	4	68	y	ENSMUSG00000040774.16	Cept1	chr3	protein_coding	choline/ethanolaminephosphotransferase 1
known_NIR_11807	chr3	106455236	106462480	+	106455236	106457815	A3SS&ES	ENSMUST00000134396.8	known	0.00	0	3	0	3	n	0.40	2	3	2	3	n	0.40	4	6	4	6	y	1.00	3	0	3	0	n	1.00	5	0	5	0	n	0.67	6	3	6	3	n	0.70	7	3	7	3	y	0.89	8	1	8	1	n	0.67	2	1	2	1	n	1.00	7	0	7	0	n	1.00	1	0	1	0	n	1.00	5	0	5	0	n	ENSMUSG00000027900.16	Dram2	chr3	protein_coding	DNA-damage regulated autophagy modulator 2
known_NIR_11808	chr3	106455236	106462480	+	106455236	106459472	A3SS&ES	ENSMUST00000129053.8	known	0.00	0	86	0	86	n	0.03	2	74	2	74	y	0.04	4	98	4	98	y	0.03	3	104	3	104	y	0.03	5	168	5	168	y	0.11	6	50	6	50	y	0.04	7	150	7	150	y	0.12	8	61	8	61	y	0.02	2	85	2	85	y	0.06	7	117	7	117	y	0.01	1	95	1	95	n	0.05	5	89	5	89	y	ENSMUSG00000027900.16	Dram2	chr3	protein_coding	DNA-damage regulated autophagy modulator 2
known_NIR_11809	chr3	106455236	106462480	+	106455236;106459596	106459472;106462480	ES	ENSMUST00000067630.13	known	0.00	0	105.0	0	86;124	n	0.02	2	82.0	2	74;90	y	0.04	4	106.5	4	98;115	y	0.02	3	126.0	3	104;148	y	0.02	5	196.0	5	168;224	y	0.08	6	66.0	6	50;82	y	0.04	7	173.0	7	150;196	y	0.09	8	77.5	8	61;94	y	0.02	2	86.0	2	85;87	y	0.05	7	145.0	7	117;173	y	0.01	1	109.0	1	95;123	n	0.04	5	113.5	5	89;138	y	ENSMUSG00000027900.16	Dram2	chr3	protein_coding	DNA-damage regulated autophagy modulator 2
known_NIR_11810	chr3	106455236;106457991	106457815;106459472	+	106455236	106459472	cassetteExon	ENSMUST00000067630.13	known	0.02	1.5	86	3;0	86	n	0.03	2.0	74	3;1	74	n	0.05	5.0	98	6;4	98	y	0.03	3.5	104	0;7	104	n	0.01	1.0	168	0;2	168	n	0.05	2.5	50	3;2	50	y	0.03	4.5	150	3;6	150	y	0.01	0.5	61	1;0	61	n	0.01	0.5	85	1;0	85	n	0.01	1.5	117	0;3	117	n	0.01	0.5	95	0;1	95	n	0.02	1.5	89	0;3	89	n	ENSMUSG00000027900.16	Dram2	chr3	protein_coding	DNA-damage regulated autophagy modulator 2
known_NIR_11811	chr3	106459596	106462483	+	106459596	106462480	A3SS	ENSMUST00000067630.13	known	0.14	21	124	21	124	y	0.17	18	90	18	90	y	0.15	20	115	20	115	y	0.12	21	148	21	148	y	0.15	40	224	40	224	y	0.07	6	82	6	82	y	0.12	26	196	26	196	y	0.07	7	94	7	94	y	0.24	27	87	27	87	y	0.11	22	173	22	173	y	0.13	18	123	18	123	y	0.13	21	138	21	138	y	ENSMUSG00000027900.16	Dram2	chr3	protein_coding	DNA-damage regulated autophagy modulator 2
known_NIR_11812	chr3	106473500	106478009	+	106473500	106480289	A3SS	ENSMUST00000029507.13	known	0.86	143	24	143	24	y	0.79	94	25	94	25	y	0.89	134	16	134	16	y	0.81	132	31	132	31	y	0.89	266	33	266	33	y	0.87	80	12	80	12	y	0.88	251	35	251	35	y	0.87	113	17	113	17	y	0.86	134	22	134	22	y	0.81	178	41	178	41	y	0.81	128	30	128	30	y	0.77	140	43	140	43	y	ENSMUSG00000027900.16	Dram2	chr3	protein_coding	DNA-damage regulated autophagy modulator 2
known_NIR_11813	chr3	106479009	106480289	+	106473500	106480289	A5SS	ENSMUST00000029507.13	known	0.89	187	24	187	24	y	0.85	141	25	141	25	y	0.89	126	16	126	16	y	0.84	160	31	160	31	y	0.90	282	33	282	33	y	0.87	78	12	78	12	y	0.90	315	35	315	35	y	0.86	108	17	108	17	y	0.84	115	22	115	22	y	0.85	226	41	226	41	y	0.84	158	30	158	30	y	0.79	160	43	160	43	y	ENSMUSG00000027900.16	Dram2	chr3	protein_coding	DNA-damage regulated autophagy modulator 2
known_NIR_11814	chr3	106629422	106638979	+	106629422	106641674	A3SS	ENSMUST00000106736.3	known	0.43	3	4	3	4	n	0.56	5	4	5	4	n	0.33	4	8	4	8	y	0.55	6	5	6	5	y	0.57	8	6	8	6	y	0.75	3	1	3	1	n	0.00	0	3	0	3	n	0.71	5	2	5	2	n	0.79	11	3	11	3	y	0.44	4	5	4	5	n	0.25	2	6	2	6	n	0.44	4	5	4	5	n	ENSMUSG00000056260.16	Lrif1	chr3	protein_coding	ligand dependent nuclear receptor interacting factor 1
known_NIR_11815	chr3	106629422	106641674	+	106629422;106640458	106638979;106641674	ES	ENSMUST00000098750.5	known	0.50	4	4.0	4	3;5	y	0.33	4	8.0	4	5;11	y	0.42	8	11.0	8	4;18	y	0.32	5	10.5	5	6;15	y	0.38	6	10.0	6	8;12	y	0.18	1	4.5	1	3;6	n	0.43	3	4.0	3	0;8	n	0.27	2	5.5	2	5;6	y	0.20	3	12.0	3	11;13	y	0.32	5	10.5	5	4;17	y	0.55	6	5.0	6	2;8	y	0.28	5	13.0	5	4;22	y	ENSMUSG00000056260.16	Lrif1	chr3	protein_coding	ligand dependent nuclear receptor interacting factor 1
known_NIR_11816	chr3	106640458	106641674	+	106629422	106641674	A5SS	ENSMUST00000106736.3	known	0.56	5	4	5	4	n	0.73	11	4	11	4	y	0.69	18	8	18	8	y	0.75	15	5	15	5	y	0.67	12	6	12	6	y	0.86	6	1	6	1	n	0.73	8	3	8	3	y	0.75	6	2	6	2	n	0.81	13	3	13	3	y	0.77	17	5	17	5	y	0.57	8	6	8	6	y	0.81	22	5	22	5	y	ENSMUSG00000056260.16	Lrif1	chr3	protein_coding	ligand dependent nuclear receptor interacting factor 1
known_NIR_11817	chr3	106640458	106641674	+	106640458	106640653	3pMXE	ENSMUST00000106737.4	known	1.00	5	0	5	0	n	1.00	11	0	11	0	n	0.90	18	2	18	2	y	1.00	15	0	15	0	n	1.00	12	0	12	0	n	1.00	6	0	6	0	n	1.00	8	0	8	0	n	0.86	6	1	6	1	n	1.00	13	0	13	0	n	1.00	17	0	17	0	n	0.89	8	1	8	1	n	1.00	22	0	22	0	n	ENSMUSG00000056260.16	Lrif1	chr3	protein_coding	ligand dependent nuclear receptor interacting factor 1
known_NIR_11818	chr3	107577636	107579358	-	107578560	107579358	3pMXE	ENSMUST00000153623.2	known	0.08	11	119	11	119	y	0.08	5	58	5	58	y	0.05	8	161	8	161	y	0.05	8	141	8	141	y	0.07	15	199	15	199	y	0.05	6	104	6	104	y	0.01	2	157	2	157	y	0.02	3	148	3	148	y	0.04	4	100	4	100	y	0.05	8	142	8	142	y	0.02	2	82	2	82	y	0.02	4	165	4	165	y	ENSMUSG00000027893.15	Ahcyl1	chr3	protein_coding	S-adenosylhomocysteine hydrolase-like 1
known_NIR_11819	chr3	107577636;107578560	107578454;107579358	-	107577636	107579358	cassetteExon	ENSMUST00000138091.8	known	0.90	96.5	11	74;119	11	y	0.93	63.0	5	68;58	5	y	0.94	129.0	8	97;161	8	y	0.94	127.5	8	114;141	8	y	0.92	165.0	15	131;199	15	y	0.93	82.5	6	61;104	6	y	0.99	135.5	2	114;157	2	y	0.97	107.0	3	66;148	3	y	0.96	85.0	4	70;100	4	y	0.94	123.5	8	105;142	8	y	0.97	67.5	2	53;82	2	y	0.97	128.5	4	92;165	4	y	ENSMUSG00000027893.15	Ahcyl1	chr3	protein_coding	S-adenosylhomocysteine hydrolase-like 1
known_NIR_11820	chr3	107585147	107603101	-	107585147	107603474	A5SS	ENSMUST00000029490.15	known	0.21	30	116	30	116	y	0.23	23	78	23	78	y	0.11	20	168	20	168	y	0.11	19	158	19	158	y	0.13	33	212	33	212	y	0.12	16	118	16	118	y	0.13	26	171	26	171	y	0.14	24	146	24	146	y	0.20	24	94	24	94	y	0.15	30	176	30	176	y	0.23	26	86	26	86	y	0.16	31	159	31	159	y	ENSMUSG00000027893.15	Ahcyl1	chr3	protein_coding	S-adenosylhomocysteine hydrolase-like 1
known_NIR_11821	chr3	107653156	107654042	-	107650461	107654042	A3SS	ENSMUST00000118593.8	known	0.15	4	23	4	23	y	0.21	4	15	4	15	y	0.07	1	13	1	13	n	0.29	2	5	2	5	n	0.19	4	17	4	17	y	0.00	0	4	0	4	n	0.19	4	17	4	17	y	0.25	4	12	4	12	y	0.08	1	11	1	11	n	0.04	1	23	1	23	n	0.18	2	9	2	9	y	0.25	2	6	2	6	n	ENSMUSG00000014599.11	Csf1	chr3	protein_coding	colony stimulating factor 1 (macrophage)
known_NIR_11822	chr3	107656485	107657627	-	107655600	107657627	A3SS	ENSMUST00000118593.8	known	0.00	0	3	0	3	n	0.57	4	3	4	3	n	0.67	8	4	8	4	y	0.38	6	10	6	10	y	0.67	14	7	14	7	y	0.82	9	2	9	2	y	0.63	12	7	12	7	y	0.40	4	6	4	6	y	0.91	10	1	10	1	n	0.65	13	7	13	7	y	0.69	9	4	9	4	y	0.62	5	3	5	3	n	ENSMUSG00000014599.11	Csf1	chr3	protein_coding	colony stimulating factor 1 (macrophage)
known_NIR_11823	chr3	107838706	107838850	-	107838706	107838935	A5SS	ENSMUST00000004137.11	known	0.05	4	82	4	82	y	0.02	2	84	2	84	y	0.00	0	14	0	14	n	0.08	7	86	7	86	y	0.05	8	152	8	152	y	0.00	0	39	0	39	n	0.03	5	158	5	158	y	0.03	2	63	2	63	y	0.09	8	83	8	83	y	0.05	5	98	5	98	y	0.01	1	101	1	101	n	0.05	8	154	8	154	y	ENSMUSG00000004035.13	Gstm7	chr3	protein_coding	glutathione S-transferase, mu 7
known_NIR_11824	chr3	107838706	107838868	-	107838706	107838850	A5SS	ENSMUST00000106688.8	known	0.50	4	4	4	4	n	0.67	4	2	4	2	n	1.00	2	0	2	0	n	0.30	3	7	3	7	y	0.56	10	8	10	8	y	1.00	3	0	3	0	n	0.50	5	5	5	5	y	0.00	0	2	0	2	n	0.50	8	8	8	8	y	0.44	4	5	4	5	n	0.67	2	1	2	1	n	0.47	7	8	7	8	y	ENSMUSG00000004035.13	Gstm7	chr3	protein_coding	glutathione S-transferase, mu 7
known_NIR_11825	chr3	107838706	107838868	-	107838706	107838935	A5SS	ENSMUST00000004137.11	known	0.05	4	82	4	82	y	0.05	4	84	4	84	y	0.12	2	14	2	14	y	0.03	3	86	3	86	y	0.06	10	152	10	152	y	0.07	3	39	3	39	y	0.03	5	158	5	158	y	0.00	0	63	0	63	n	0.09	8	83	8	83	y	0.04	4	98	4	98	y	0.02	2	101	2	101	y	0.04	7	154	7	154	y	ENSMUSG00000004035.13	Gstm7	chr3	protein_coding	glutathione S-transferase, mu 7
known_NIR_11826	chr3	107848600	107850018	-	107849730	107850018	A3SS&ES	ENSMUST00000106684.8	known	0.06	10	163	10	163	y	0.06	7	118	7	118	y	0.17	9	44	9	44	y	0.05	9	188	9	188	y	0.03	5	155	5	155	y	0.14	6	36	6	36	y	0.02	5	210	5	210	y	0.14	6	38	6	38	y	0.04	10	242	10	242	y	0.05	14	256	14	256	y	0.06	15	247	15	247	y	0.04	13	303	13	303	y	ENSMUSG00000068762.12	Gstm6	chr3	protein_coding	glutathione S-transferase, mu 6
known_NIR_11827	chr3	107848600;107849730	107849449;107850018	-	107848600	107850018	cassetteExon	ENSMUST00000106683.8	known	0.94	170.0	10	177;163	10	y	0.95	128.0	7	138;118	7	y	0.83	45.0	9	46;44	9	y	0.95	186.5	9	185;188	9	y	0.97	152.5	5	150;155	5	y	0.86	36.5	6	37;36	6	y	0.97	184.5	5	159;210	5	y	0.90	54.5	6	71;38	6	y	0.96	246.5	10	251;242	10	y	0.95	262.0	14	268;256	14	y	0.94	226.0	15	205;247	15	y	0.96	295.0	13	287;303	13	y	ENSMUSG00000068762.12	Gstm6	chr3	protein_coding	glutathione S-transferase, mu 6
known_NIR_11828	chr3	107848642	107849449	-	107848600	107849449	A3SS	ENSMUST00000106685.9	known	0.01	1	177	1	177	n	0.00	0	138	0	138	n	0.00	0	46	0	46	n	0.01	1	185	1	185	n	0.00	0	150	0	150	n	0.00	0	37	0	37	n	0.00	0	159	0	159	n	0.03	2	71	2	71	y	0.00	0	251	0	251	n	0.00	0	268	0	268	n	0.01	3	205	3	205	y	0.02	7	287	7	287	y	ENSMUSG00000068762.12	Gstm6	chr3	protein_coding	glutathione S-transferase, mu 6
known_NIR_11829	chr3	107920094	107920554	-	107920094	107922069	A5SS	ENSMUST00000004140.11	known	0.00	0	3093	0	3093	n	0.00	4	2083	4	2083	y	0.00	0	652	0	652	n	0.00	0	2289	0	2289	n	0.00	0	1473	0	1473	n	0.00	0	269	0	269	n	0.00	0	2389	0	2389	n	0.00	0	282	0	282	n	0.00	0	3303	0	3303	n	0.00	4	4460	4	4460	y	0.00	2	5644	2	5644	y	0.00	0	5459	0	5459	n	ENSMUSG00000058135.13	Gstm1	chr3	protein_coding	glutathione S-transferase, mu 1
known_NIR_11830	chr3	107922434	107923644	-	107922356	107923644	A3SS	ENSMUST00000004140.11	known	0.01	46	4313	46	4313	y	0.01	31	2845	31	2845	y	0.01	8	879	8	879	y	0.01	48	3163	48	3163	y	0.02	29	1902	29	1902	y	0.02	6	393	6	393	y	0.01	47	3196	47	3196	y	0.01	4	393	4	393	y	0.01	52	4683	52	4683	y	0.01	56	6326	56	6326	y	0.01	88	7318	88	7318	y	0.01	69	7908	69	7908	y	ENSMUSG00000058135.13	Gstm1	chr3	protein_coding	glutathione S-transferase, mu 1
known_NIR_11831	chr3	107922434	107923644	-	107922461	107923644	A3SS	ENSMUST00000153314.8	known	0.98	46	1	46	1	n	0.94	31	2	31	2	y	0.89	8	1	8	1	n	0.94	48	3	48	3	y	0.85	29	5	29	5	y	1.00	6	0	6	0	n	0.89	47	6	47	6	y	1.00	4	0	4	0	n	0.95	52	3	52	3	y	0.88	56	8	56	8	y	0.92	88	8	88	8	y	0.92	69	6	69	6	y	ENSMUSG00000058135.13	Gstm1	chr3	protein_coding	glutathione S-transferase, mu 1
known_NIR_11832	chr3	107922461	107923644	-	107922356	107923644	A3SS	ENSMUST00000004140.11	known	0.00	1	4313	1	4313	n	0.00	2	2845	2	2845	y	0.00	1	879	1	879	n	0.00	3	3163	3	3163	y	0.00	5	1902	5	1902	y	0.00	0	393	0	393	n	0.00	6	3196	6	3196	y	0.00	0	393	0	393	n	0.00	3	4683	3	4683	y	0.00	8	6326	8	6326	y	0.00	8	7318	8	7318	y	0.00	6	7908	6	7908	y	ENSMUSG00000058135.13	Gstm1	chr3	protein_coding	glutathione S-transferase, mu 1
known_NIR_11833	chr3	107951744	107952126	-	107951744	107951953	A5SS	ENSMUST00000029489.15	known	0.01	1	98	1	98	n	0.01	1	78	1	78	n	0.03	1	33	1	33	n	0.00	0	105	0	105	n	0.02	3	120	3	120	y	0.03	1	34	1	34	n	0.00	0	173	0	173	n	0.04	2	54	2	54	y	0.00	0	104	0	104	n	0.00	1	209	1	209	n	0.00	0	127	0	127	n	0.00	0	127	0	127	n	ENSMUSG00000027890.18	Gstm4	chr3	protein_coding	glutathione S-transferase, mu 4
known_NIR_11834	chr3	107951744	107952161	-	107951744	107951953	A5SS	ENSMUST00000029489.15	known	0.01	1	98	1	98	n	0.01	1	78	1	78	n	0.06	2	33	2	33	y	0.00	0	105	0	105	n	0.01	1	120	1	120	n	0.03	1	34	1	34	n	0.00	0	173	0	173	n	0.04	2	54	2	54	y	0.00	0	104	0	104	n	0.00	1	209	1	209	n	0.00	0	127	0	127	n	0.00	0	127	0	127	n	ENSMUSG00000027890.18	Gstm4	chr3	protein_coding	glutathione S-transferase, mu 4
known_NIR_11835	chr3	107988447	107993534	-	107988447	107992563	5pMXE	ENSMUST00000136712.8	known	0.84	16	3	16	3	y	0.75	12	4	12	4	y	0.75	30	10	30	10	y	0.69	22	10	22	10	y	0.56	15	12	15	12	y	0.40	6	9	6	9	y	0.81	25	6	25	6	y	0.73	11	4	11	4	y	0.67	14	7	14	7	y	0.63	12	7	12	7	y	0.62	10	6	10	6	y	0.65	17	9	17	9	y	ENSMUSG00000027889.18	Ampd2	chr3	protein_coding	adenosine monophosphate deaminase 2
known_NIR_11836	chr3	108093994	108094442	+	108093994	108094407	A3SS	ENSMUST00000050909.7	known	0.43	3	4	3	4	n	0.00	0	7	0	7	n	0.44	4	5	4	5	n	0.71	5	2	5	2	n	0.20	1	4	1	4	n	0.00	0	5	0	5	n	0.43	3	4	3	4	n	0.22	2	7	2	7	n	0.67	4	2	4	2	n	0.14	1	6	1	6	n	0.40	2	3	2	3	n	0.43	6	8	6	8	y	ENSMUSG00000050947.10	Amigo1	chr3	protein_coding	adhesion molecule with Ig like domain 1
known_NIR_11837	chr3	108107478	108108076	-	108107478	108107943	A5SS	ENSMUST00000106655.2	known	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.44	4	5	4	5	n	0.20	1	4	1	4	n	0.40	2	3	2	3	n	0.20	2	8	2	8	y	0.00	0	3	0	3	n	0.83	5	1	5	1	n	0.33	1	2	1	2	n	0.60	3	2	3	2	n	0.67	2	1	2	1	n	ENSMUSG00000048796.8	Cyb561d1	chr3	protein_coding	cytochrome b-561 domain containing 1
known_NIR_11838	chr3	108261557	108263547	+	108261557;108262886	108262788;108263547	ES	ENSMUST00000135636.6	known	0.84	21	4.0	21	4;4	y	0.80	6	1.5	6	2;1	n	0.64	28	15.5	28	17;14	y	0.73	23	8.5	23	8;9	y	0.79	24	6.5	24	3;10	y	0.80	24	6.0	24	7;5	y	0.83	25	5.0	25	8;2	y	0.52	13	12.0	13	12;12	y	0.88	15	2.0	15	4;0	n	0.79	28	7.5	28	7;8	y	0.85	23	4.0	23	2;6	y	0.81	27	6.5	27	6;7	y	ENSMUSG00000068747.15	Sort1	chr3	protein_coding	sortilin 1
known_NIR_11839	chr3	108334705;108335248	108335177;108335490	-	108334705	108335490	cassetteExon	ENSMUST00000090553.12	known	0.08	12.0	140	12;12	140	y	0.05	8.0	162	10;6	162	y	0.08	23.5	257	24;23	257	y	0.05	7.0	131	9;5	131	y	0.08	15.0	168	16;14	168	y	0.05	4.5	86	4;5	86	y	0.07	15.0	194	20;10	194	y	0.08	6.0	67	5;7	67	y	0.06	7.0	111	10;4	111	y	0.06	10.5	165	9;12	165	y	0.06	9.5	153	11;8	153	y	0.10	18.0	163	25;11	163	y	ENSMUSG00000068739.14	Sars	chr3	protein_coding	seryl-aminoacyl-tRNA synthetase
known_NIR_11840	chr3	108467634	108469587	-	108467634	108469403	5pMXE	ENSMUST00000106622.3	known	0.90	44	5	44	5	y	0.85	33	6	33	6	y	0.89	86	11	86	11	y	0.85	55	10	55	10	y	0.87	81	12	81	12	y	0.92	34	3	34	3	y	0.80	53	13	53	13	y	0.91	62	6	62	6	y	0.90	37	4	37	4	y	0.96	69	3	69	3	y	0.85	45	8	45	8	y	0.89	66	8	66	8	y	ENSMUSG00000068732.6	Tmem167b	chr3	protein_coding	transmembrane protein 167B
known_NIR_11841	chr3	108479064	108480196	+	108479068	108480196	A5SS	ENSMUST00000131814.8	known	1.00	47	0	47	0	n	1.00	23	0	23	0	n	1.00	19	0	19	0	n	1.00	29	0	29	0	n	0.98	49	1	49	1	n	1.00	23	0	23	0	n	0.94	46	3	46	3	y	1.00	18	0	18	0	n	0.96	26	1	26	1	n	0.94	31	2	31	2	y	0.92	34	3	34	3	y	0.97	31	1	31	1	n	ENSMUSG00000048100.14	Taf13	chr3	protein_coding	TATA-box binding protein associated factor 13
known_NIR_11842	chr3	108479064	108480196	+	108479429	108480196	A5SS	ENSMUST00000056292.8	known	0.98	47	1	47	1	n	0.85	23	4	23	4	y	0.83	19	4	19	4	y	0.97	29	1	29	1	n	0.94	49	3	49	3	y	1.00	23	0	23	0	n	0.94	46	3	46	3	y	0.95	18	1	18	1	n	0.90	26	3	26	3	y	0.79	31	8	31	8	y	0.94	34	2	34	2	y	0.94	31	2	31	2	y	ENSMUSG00000048100.14	Taf13	chr3	protein_coding	TATA-box binding protein associated factor 13
known_NIR_11843	chr3	108479429	108480196	+	108479068	108480196	A5SS	ENSMUST00000131814.8	known	1.00	1	0	1	0	n	1.00	4	0	4	0	n	1.00	4	0	4	0	n	1.00	1	0	1	0	n	0.75	3	1	3	1	n	-	-	-	-	-	-	0.50	3	3	3	3	n	1.00	1	0	1	0	n	0.75	3	1	3	1	n	0.80	8	2	8	2	y	0.40	2	3	2	3	n	0.67	2	1	2	1	n	ENSMUSG00000048100.14	Taf13	chr3	protein_coding	TATA-box binding protein associated factor 13
known_NIR_11844	chr3	108561367	108568671	+	108561296	108568671	A5SS	ENSMUST00000106609.8	known	0.56	23	18	23	18	y	0.74	31	11	31	11	y	0.36	16	29	16	29	y	0.53	39	35	39	35	y	0.60	54	36	54	36	y	0.59	16	11	16	11	y	0.62	31	19	31	19	y	0.66	23	12	23	12	y	0.62	37	23	37	23	y	0.59	51	36	51	36	y	0.71	25	10	25	10	y	0.46	31	37	31	37	y	ENSMUSG00000027884.17	Clcc1	chr3	protein_coding	chloride channel CLIC-like 1
known_NIR_11845	chr3	108561661	108568671	+	108561296	108568671	A5SS	ENSMUST00000106609.8	known	0.00	0	18	0	18	n	0.08	1	11	1	11	n	0.03	1	29	1	29	n	0.03	1	35	1	35	n	0.03	1	36	1	36	n	0.00	0	11	0	11	n	0.00	0	19	0	19	n	0.14	2	12	2	12	y	0.04	1	23	1	23	n	0.08	3	36	3	36	y	0.00	0	10	0	10	n	0.05	2	37	2	37	y	ENSMUSG00000027884.17	Clcc1	chr3	protein_coding	chloride channel CLIC-like 1
known_NIR_11846	chr3	108561661	108568671	+	108561367	108568671	A5SS	ENSMUST00000130352.4	known	0.00	0	23	0	23	n	0.03	1	31	1	31	n	0.06	1	16	1	16	n	0.03	1	39	1	39	n	0.02	1	54	1	54	n	0.00	0	16	0	16	n	0.00	0	31	0	31	n	0.08	2	23	2	23	y	0.03	1	37	1	37	n	0.06	3	51	3	51	y	0.00	0	25	0	25	n	0.06	2	31	2	31	y	ENSMUSG00000027884.17	Clcc1	chr3	protein_coding	chloride channel CLIC-like 1
known_NIR_11847	chr3	108562066	108568671	+	108561296	108568671	A5SS	ENSMUST00000106609.8	known	0.00	0	18	0	18	n	0.08	1	11	1	11	n	0.06	2	29	2	29	y	0.05	2	35	2	35	y	0.08	3	36	3	36	y	0.00	0	11	0	11	n	0.00	0	19	0	19	n	0.14	2	12	2	12	y	0.08	2	23	2	23	y	0.08	3	36	3	36	y	0.09	1	10	1	10	n	0.05	2	37	2	37	y	ENSMUSG00000027884.17	Clcc1	chr3	protein_coding	chloride channel CLIC-like 1
known_NIR_11848	chr3	108569349	108569825	+	108569349	108570840	A3SS	ENSMUST00000106609.8	known	0.00	0	64	0	64	n	0.04	2	55	2	55	y	0.00	0	48	0	48	n	0.00	0	93	0	93	n	0.01	1	93	1	93	n	0.06	2	29	2	29	y	0.03	2	77	2	77	y	0.00	0	39	0	39	n	0.00	0	86	0	86	n	0.01	1	110	1	110	n	0.00	0	54	0	54	n	0.00	0	90	0	90	n	ENSMUSG00000027884.17	Clcc1	chr3	protein_coding	chloride channel CLIC-like 1
known_NIR_11849	chr3	108570608	108570840	+	108569349	108570840	A5SS	ENSMUST00000106609.8	known	0.03	2	64	2	64	y	0.00	0	55	0	55	n	0.00	0	48	0	48	n	0.00	0	93	0	93	n	0.01	1	93	1	93	n	0.00	0	29	0	29	n	0.00	0	77	0	77	n	0.00	0	39	0	39	n	0.00	0	86	0	86	n	0.02	2	110	2	110	y	0.00	0	54	0	54	n	0.02	2	90	2	90	y	ENSMUSG00000027884.17	Clcc1	chr3	protein_coding	chloride channel CLIC-like 1
known_NIR_11850	chr3	108610402	108629357	-	108610402	108618593	5pMXE	ENSMUST00000145558.2	known	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.07	1	14	1	14	n	0.07	1	14	1	14	n	0.03	1	31	1	31	n	0.00	0	15	0	15	n	0.00	0	17	0	17	n	0.16	5	26	5	26	y	0.00	0	13	0	13	n	0.10	2	18	2	18	y	0.15	4	22	4	22	y	0.00	0	18	0	18	n	ENSMUSG00000027883.16	Gpsm2	chr3	protein_coding	G-protein signalling modulator 2 (AGS3-like, C. elegans)
known_NIR_11851	chr3	108610402	108629357	-	108610402;108618896	108618593;108629357	ES	ENSMUST00000029482.16	known	0.00	0	9.5	0	14;5	n	0.00	0	7.0	0	12;2	n	0.08	1	12.0	1	14;10	n	0.06	1	16.0	1	14;18	n	0.04	1	24.5	1	31;18	n	0.00	0	14.0	0	15;13	n	0.00	0	18.0	0	17;19	n	0.23	5	16.5	5	26;7	y	0.00	0	11.5	0	13;10	n	0.11	2	17.0	2	18;16	y	0.22	4	14.0	4	22;6	y	0.00	0	14.0	0	18;10	n	ENSMUSG00000027883.16	Gpsm2	chr3	protein_coding	G-protein signalling modulator 2 (AGS3-like, C. elegans)
known_NIR_11852	chr3	108733186	108733322	-	108729909	108733322	A3SS	ENSMUST00000102621.11	known	0.00	0	37	0	37	n	0.06	1	16	1	16	n	0.00	0	50	0	50	n	0.00	0	30	0	30	n	0.07	3	39	3	39	y	0.04	1	22	1	22	n	0.00	0	43	0	43	n	0.00	0	23	0	23	n	0.00	0	15	0	15	n	0.00	0	39	0	39	n	0.00	0	16	0	16	n	0.00	0	37	0	37	n	ENSMUSG00000027882.19	Stxbp3	chr3	protein_coding	syntaxin binding protein 3
known_NIR_11853	chr3	108812650;108813304	108813234;108815103	-	108812650	108815103	cassetteExon	ENSMUST00000129273.8	known	0.29	12.5	30	14;11	30	y	0.25	9.5	28	17;2	28	y	0.15	6.0	34	10;2	34	y	0.21	6.5	24	11;2	24	y	0.38	13.0	21	23;3	21	y	0.52	8.5	8	13;4	8	y	0.27	11.0	30	19;3	30	y	0.31	8.5	19	11;6	19	y	0.12	4.0	29	8;0	29	n	0.11	5.5	43	7;4	43	y	0.21	6.0	22	11;1	22	n	0.35	11.5	21	15;8	21	y	ENSMUSG00000027881.15	Prpf38b	chr3	protein_coding	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B
known_NIR_11854	chr3	108815399	108815642	-	108815399	108815652	A5SS	ENSMUST00000129273.8	known	0.16	8	42	8	42	y	0.26	11	31	11	31	y	0.19	9	38	9	38	y	0.25	14	41	14	41	y	0.20	12	49	12	49	y	0.21	7	26	7	26	y	0.14	7	44	7	44	y	0.30	13	30	13	30	y	0.22	8	29	8	29	y	0.16	10	54	10	54	y	0.17	7	33	7	33	y	0.31	19	43	19	43	y	ENSMUSG00000027881.15	Prpf38b	chr3	protein_coding	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B
known_NIR_11855	chr3	108815720	108818480	-	108815720;108817711	108817659;108818480	ES	ENSMUST00000129273.8	known	0.87	27	4.0	27	2;6	y	0.78	27	7.5	27	10;5	y	0.91	42	4.0	42	4;4	y	0.72	43	17.0	43	18;16	y	0.82	47	10.0	47	13;7	y	0.86	24	4.0	24	6;2	y	0.77	24	7.0	24	11;3	y	0.69	17	7.5	17	9;6	y	0.81	30	7.0	30	11;3	y	0.91	34	3.5	34	4;3	y	0.91	36	3.5	36	4;3	y	0.90	54	6.0	54	9;3	y	ENSMUSG00000027881.15	Prpf38b	chr3	protein_coding	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B
known_NIR_11856	chr3	113363706	113367820	-	113363706	113368253	A5SS	ENSMUST00000106540.8	known	0.03	7	217	7	217	y	0.05	7	136	7	136	y	0.05	9	187	9	187	y	0.02	5	289	5	289	y	0.04	19	435	19	435	y	0.02	5	262	5	262	y	0.05	18	359	18	359	y	0.03	10	300	10	300	y	0.04	10	235	10	235	y	0.03	11	349	11	349	y	0.05	13	262	13	262	y	0.03	13	448	13	448	y	ENSMUSG00000074264.13	Amy1	chr3	protein_coding	amylase 1, salivary
known_NIR_11857	chr3	113363706	113399221	-	113363706	113367820	5pMXE	ENSMUST00000142505.9	known	0.22	2	7	2	7	n	0.00	0	7	0	7	n	0.44	7	9	7	9	y	0.38	3	5	3	5	n	0.14	3	19	3	19	y	0.38	3	5	3	5	n	0.05	1	18	1	18	n	0.09	1	10	1	10	n	0.17	2	10	2	10	y	0.39	7	11	7	11	y	0.19	3	13	3	13	y	0.28	5	13	5	13	y	ENSMUSG00000074264.13	Amy1	chr3	protein_coding	amylase 1, salivary
known_NIR_11858	chr3	113363706	113399221	-	113363706	113368253	5pMXE	ENSMUST00000106540.8	known	0.01	2	217	2	217	y	0.00	0	136	0	136	n	0.04	7	187	7	187	y	0.01	3	289	3	289	y	0.01	3	435	3	435	y	0.01	3	262	3	262	y	0.00	1	359	1	359	n	0.00	1	300	1	300	n	0.01	2	235	2	235	y	0.02	7	349	7	349	y	0.01	3	262	3	262	y	0.01	5	448	5	448	y	ENSMUSG00000074264.13	Amy1	chr3	protein_coding	amylase 1, salivary
known_NIR_11859	chr3	113399296	113401989	-	113400948	113401989	A3SS	ENSMUST00000092154.10	known	0.61	19	12	19	12	y	0.88	22	3	22	3	y	0.83	29	6	29	6	y	0.65	22	12	22	12	y	0.57	20	15	20	15	y	0.77	17	5	17	5	y	0.54	20	17	20	17	y	0.60	9	6	9	6	y	0.50	18	18	18	18	y	0.64	29	16	29	16	y	0.72	21	8	21	8	y	0.81	38	9	38	9	y	ENSMUSG00000027981.15	Rnpc3	chr3	protein_coding	RNA-binding region (RNP1, RRM) containing 3
known_NIR_11860	chr3	113402057	113402687	-	113402060	113402687	A3SS	ENSMUST00000153853.8	known	0.00	0	32	0	32	n	0.08	3	33	3	33	y	0.07	3	42	3	42	y	0.02	1	40	1	40	n	0.04	2	51	2	51	y	0.00	0	21	0	21	n	0.05	2	42	2	42	y	0.08	1	12	1	12	n	0.00	0	47	0	47	n	0.00	0	62	0	62	n	0.02	1	46	1	46	n	0.02	1	41	1	41	n	ENSMUSG00000027981.15	Rnpc3	chr3	protein_coding	RNA-binding region (RNP1, RRM) containing 3
known_NIR_11861	chr3	115675487	115679971	-	115675487	115679863	A5SS	ENSMUST00000188260.7	known	0.06	3	51	3	51	y	0.00	0	64	0	64	n	0.00	0	38	0	38	n	0.00	0	44	0	44	n	0.06	3	50	3	50	y	0.00	0	40	0	40	n	0.02	1	62	1	62	n	0.10	3	28	3	28	y	0.04	1	27	1	27	n	0.00	0	57	0	57	n	0.06	3	45	3	45	y	0.00	0	57	0	57	n	ENSMUSG00000054426.12	A930005H10Rik	chr3	lncRNA	RIKEN cDNA A930005H10 gene
known_NIR_11862	chr3	115675487	115681413	-	115675487	115679863	A5SS&ES	ENSMUST00000188260.7	known	0.00	0	51	0	51	n	0.00	0	64	0	64	n	0.00	0	38	0	38	n	0.00	0	44	0	44	n	0.00	0	50	0	50	n	0.00	0	40	0	40	n	0.00	0	62	0	62	n	0.03	1	28	1	28	n	0.00	0	27	0	27	n	0.03	2	57	2	57	y	0.00	0	45	0	45	n	0.05	3	57	3	57	y	ENSMUSG00000054426.12	A930005H10Rik	chr3	lncRNA	RIKEN cDNA A930005H10 gene
known_NIR_11863	chr3	115675487	115681425	-	115675487	115681413	A5SS	ENSMUST00000185681.2	known	1.00	21	0	21	0	n	1.00	18	0	18	0	n	1.00	15	0	15	0	n	1.00	11	0	11	0	n	1.00	20	0	20	0	n	1.00	7	0	7	0	n	1.00	29	0	29	0	n	0.93	14	1	14	1	n	1.00	13	0	13	0	n	0.94	30	2	30	2	y	1.00	21	0	21	0	n	0.86	19	3	19	3	y	ENSMUSG00000054426.12	A930005H10Rik	chr3	lncRNA	RIKEN cDNA A930005H10 gene
known_NIR_11864	chr3	115675487	115681425	-	115675487;115680024	115679863;115681425	ES	ENSMUST00000188260.7	known	0.30	21	48.5	21	51;46	y	0.30	18	42.5	18	64;21	y	0.33	15	30.5	15	38;23	y	0.22	11	38.5	11	44;33	y	0.33	20	40.0	20	50;30	y	0.20	7	27.5	7	40;15	y	0.35	29	53.0	29	62;44	y	0.36	14	24.5	14	28;21	y	0.37	13	22.0	13	27;17	y	0.37	30	50.5	30	57;44	y	0.38	21	35.0	21	45;25	y	0.29	19	45.5	19	57;34	y	ENSMUSG00000054426.12	A930005H10Rik	chr3	lncRNA	RIKEN cDNA A930005H10 gene
known_NIR_11865	chr3	115675487	115681425	-	115680024	115681425	3pMXE	ENSMUST00000185512.2	known	0.31	21	46	21	46	y	0.46	18	21	18	21	y	0.39	15	23	15	23	y	0.25	11	33	11	33	y	0.40	20	30	20	30	y	0.32	7	15	7	15	y	0.40	29	44	29	44	y	0.40	14	21	14	21	y	0.43	13	17	13	17	y	0.41	30	44	30	44	y	0.46	21	25	21	25	y	0.36	19	34	19	34	y	ENSMUSG00000054426.12	A930005H10Rik	chr3	lncRNA	RIKEN cDNA A930005H10 gene
known_NIR_11866	chr3	115675487;115680024	115679971;115681425	-	115675487	115681425	cassetteExon	ENSMUST00000185424.2	known	0.54	24.5	21	3;46	21	y	0.37	10.5	18	0;21	18	n	0.43	11.5	15	0;23	15	n	0.60	16.5	11	0;33	11	n	0.45	16.5	20	3;30	20	y	0.52	7.5	7	0;15	7	n	0.44	22.5	29	1;44	29	n	0.46	12.0	14	3;21	14	y	0.41	9.0	13	1;17	13	n	0.42	22.0	30	0;44	30	n	0.40	14.0	21	3;25	21	y	0.47	17.0	19	0;34	19	n	ENSMUSG00000054426.12	A930005H10Rik	chr3	lncRNA	RIKEN cDNA A930005H10 gene
known_NIR_11867	chr3	115681926	115682089	+	115681811	115682089	A5SS	ENSMUST00000200258.2	known	0.95	19	1	19	1	n	1.00	14	0	14	0	n	0.97	34	1	34	1	n	1.00	23	0	23	0	n	0.97	31	1	31	1	n	0.80	12	3	12	3	y	0.96	24	1	24	1	n	0.91	21	2	21	2	y	1.00	25	0	25	0	n	1.00	19	0	19	0	n	1.00	27	0	27	0	n	0.94	29	2	29	2	y	ENSMUSG00000033554.18	Dph5	chr3	protein_coding	diphthamide biosynthesis 5
known_NIR_11868	chr3	115801531	115804271	+	115802186	115804271	5pMXE	ENSMUST00000106502.2	known	0.56	5	4	5	4	n	0.83	5	1	5	1	n	0.64	9	5	9	5	y	0.67	8	4	8	4	y	0.64	7	4	7	4	y	0.75	9	3	9	3	y	0.85	11	2	11	2	y	0.86	12	2	12	2	y	0.59	10	7	10	7	y	0.36	4	7	4	7	y	0.50	4	4	4	4	n	0.14	1	6	1	6	n	ENSMUSG00000027963.15	Extl2	chr3	protein_coding	exostosin-like glycosyltransferase 2
known_NIR_11869	chr3	115801531	115817656	+	115801531;115804345	115804271;115817656	ES	ENSMUST00000029575.12	known	0.00	0	4.5	0	5;4	n	0.00	0	5.0	0	5;5	n	0.00	0	10.5	0	9;12	n	0.00	0	9.0	0	8;10	n	0.19	2	8.5	2	7;10	y	0.00	0	7.0	0	9;5	n	0.00	0	9.0	0	11;7	n	0.00	0	13.5	0	12;15	n	0.00	0	10.5	0	10;11	n	0.00	0	3.5	0	4;3	n	0.00	0	6.0	0	4;8	n	0.18	1	4.5	1	1;8	n	ENSMUSG00000027963.15	Extl2	chr3	protein_coding	exostosin-like glycosyltransferase 2
known_NIR_11870	chr3	115917442	115918032	-	115914722	115918032	A3SS	ENSMUST00000029574.13	known	0.38	6	10	6	10	y	0.33	5	10	5	10	y	0.38	9	15	9	15	y	0.29	4	10	4	10	y	0.33	5	10	5	10	y	0.43	3	4	3	4	n	0.39	7	11	7	11	y	0.00	0	1	0	1	n	0.50	4	4	4	4	n	0.00	0	10	0	10	n	0.33	2	4	2	4	n	0.17	2	10	2	10	y	ENSMUSG00000027962.15	Vcam1	chr3	protein_coding	vascular cell adhesion molecule 1
known_NIR_11871	chr3	116298095	116300484	-	116298117	116300484	A3SS	ENSMUST00000000348.15	known	0.10	3	27	3	27	y	0.04	1	23	1	23	n	0.06	3	47	3	47	y	0.14	4	24	4	24	y	0.09	4	40	4	40	y	0.00	0	28	0	28	n	0.10	3	26	3	26	y	0.00	0	30	0	30	n	0.23	5	17	5	17	y	0.24	8	26	8	26	y	0.14	4	24	4	24	y	0.15	4	23	4	23	y	ENSMUSG00000000339.15	Rtca	chr3	protein_coding	RNA 3'-terminal phosphate cyclase
known_NIR_11872	chr3	116306840;116314009	116313886;116326904	+	116306840	116326904	cassetteExon	ENSMUST00000197201.5	known	1.00	33.5	0	66;1	0	n	1.00	17.0	0	33;1	0	n	0.89	24.0	3	47;1	3	n	0.98	45.5	1	87;4	1	n	0.93	37.5	3	75;0	3	n	0.96	24.5	1	47;2	1	n	0.93	37.0	3	71;3	3	y	0.97	28.0	1	56;0	1	n	0.97	33.0	1	66;0	1	n	0.92	48.0	4	96;0	4	n	1.00	26.5	0	52;1	0	n	1.00	55.0	0	104;6	0	n	ENSMUSG00000000340.11	Dbt	chr3	protein_coding	dihydrolipoamide branched chain transacylase E2
known_NIR_11873	chr3	116314009	116326904	+	116314009;116317076	116317001;116326904	ES	ENSMUST00000000349.11	known	0.02	1	61.0	1	56;66	n	0.02	1	44.5	1	46;43	n	0.02	1	48.5	1	51;46	n	0.04	4	107.0	4	112;102	y	0.00	0	85.5	0	93;78	n	0.04	2	45.5	2	45;46	y	0.04	3	80.5	3	86;75	y	0.00	0	62.5	0	71;54	n	0.00	0	75.0	0	73;77	n	0.00	0	104.5	0	118;91	n	0.02	1	60.0	1	56;64	n	0.04	6	129.0	6	136;122	y	ENSMUSG00000000340.11	Dbt	chr3	protein_coding	dihydrolipoamide branched chain transacylase E2
known_NIR_11874	chr3	116317076	116326904	+	116306840	116326904	A5SS	ENSMUST00000197201.5	known	1.00	66	0	66	0	n	1.00	43	0	43	0	n	0.94	46	3	46	3	y	0.99	102	1	102	1	n	0.96	78	3	78	3	y	0.98	46	1	46	1	n	0.96	75	3	75	3	y	0.98	54	1	54	1	n	0.99	77	1	77	1	n	0.96	91	4	91	4	y	1.00	64	0	64	0	n	1.00	122	0	122	0	n	ENSMUSG00000000340.11	Dbt	chr3	protein_coding	dihydrolipoamide branched chain transacylase E2
known_NIR_11875	chr3	116376373	116378845	-	116376572	116378845	A3SS	ENSMUST00000041524.11	known	0.25	1	3	1	3	n	0.71	5	2	5	2	n	0.29	2	5	2	5	n	0.44	4	5	4	5	n	0.14	1	6	1	6	n	0.50	2	2	2	2	n	0.29	2	5	2	5	n	0.90	9	1	9	1	n	0.40	2	3	2	3	n	0.70	7	3	7	3	y	0.67	8	4	8	4	y	0.22	2	7	2	7	n	ENSMUSG00000033439.13	Trmt13	chr3	protein_coding	tRNA methyltransferase 13
known_NIR_11876	chr3	116382173	116383140	-	116382288	116383140	A3SS	ENSMUST00000041524.11	known	0.33	2	4	2	4	n	0.00	0	5	0	5	n	0.00	0	17	0	17	n	0.31	4	9	4	9	y	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.25	2	6	2	6	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.07	1	13	1	13	n	0.00	0	15	0	15	n	ENSMUSG00000033439.13	Trmt13	chr3	protein_coding	tRNA methyltransferase 13
known_NIR_11877	chr3	116468953	116469511	-	116468953	116471512	A5SS	ENSMUST00000029569.9	known	0.11	6	49	6	49	y	0.25	13	38	13	38	y	0.04	4	99	4	99	y	0.09	7	70	7	70	y	0.11	12	101	12	101	y	0.09	7	67	7	67	y	0.03	3	93	3	93	y	0.10	7	63	7	63	y	0.11	7	55	7	55	y	0.08	8	87	8	87	y	0.07	4	56	4	56	y	0.05	4	74	4	74	y	ENSMUSG00000027957.14	Slc35a3	chr3	protein_coding	solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3
known_NIR_11878	chr3	116542692	116544047	-	116540353	116544047	A3SS	ENSMUST00000040603.14	known	0.03	2	59	2	59	y	0.00	0	50	0	50	n	0.00	0	34	0	34	n	0.00	0	49	0	49	n	0.01	1	87	1	87	n	0.00	0	13	0	13	n	0.00	0	111	0	111	n	0.00	0	37	0	37	n	0.00	0	69	0	69	n	0.00	0	85	0	85	n	0.00	0	87	0	87	n	0.00	0	98	0	98	n	ENSMUSG00000033400.15	Agl	chr3	protein_coding	amylo-1,6-glucosidase, 4-alpha-glucanotransferase
known_NIR_11879	chr3	116578289	116578753	-	116578289	116578709	A5SS	ENSMUST00000040603.14	known	0.06	1	16	1	16	n	0.00	0	8	0	8	n	0.00	0	21	0	21	n	0.00	0	25	0	25	n	0.05	2	39	2	39	y	0.00	0	7	0	7	n	0.00	0	22	0	22	n	0.08	1	11	1	11	n	0.07	1	14	1	14	n	0.00	0	34	0	34	n	0.08	2	22	2	22	y	0.03	1	36	1	36	n	ENSMUSG00000033400.15	Agl	chr3	protein_coding	amylo-1,6-glucosidase, 4-alpha-glucanotransferase
known_NIR_11880	chr3	116601066	116601197	-	116601066	116601677	A5SS	ENSMUST00000040603.14	known	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	19	0	19	n	0.00	0	25	0	25	n	0.00	0	18	0	18	n	0.00	0	4	0	4	n	0.06	2	29	2	29	y	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	23	0	23	n	ENSMUSG00000033400.15	Agl	chr3	protein_coding	amylo-1,6-glucosidase, 4-alpha-glucanotransferase
known_NIR_11881	chr3	116746786	116762560	-	116746786	116762147	A5SS	ENSMUST00000040097.14	known	0.00	0	17	0	17	n	0.05	1	19	1	19	n	0.10	5	45	5	45	y	0.00	0	41	0	41	n	0.07	4	56	4	56	y	0.07	2	25	2	25	y	0.10	6	56	6	56	y	0.00	0	31	0	31	n	0.00	0	30	0	30	n	0.07	6	75	6	75	y	0.00	0	46	0	46	n	0.04	2	51	2	51	y	ENSMUSG00000033377.15	Palmd	chr3	protein_coding	palmdelphin
known_NIR_11882	chr3	117576025	117623226	-	117576025;117594642	117594490;117623226	ES	ENSMUST00000029639.12	known	0.26	32	91.5	32	100;83	y	0.20	25	98.0	25	102;94	y	0.17	39	185.0	39	171;199	y	0.20	23	93.0	23	110;76	y	0.22	45	157.5	45	177;138	y	0.11	11	86.5	11	91;82	y	0.21	33	121.0	33	121;121	y	0.19	16	70.0	16	71;69	y	0.17	15	75.0	15	90;60	y	0.20	28	111.5	28	118;105	y	0.24	24	78.0	24	81;75	y	0.21	27	100.5	27	118;83	y	ENSMUSG00000028007.14	Snx7	chr3	protein_coding	sorting nexin 7
known_NIR_11883	chr3	117630985	117633577	-	117630985;117632633	117632469;117633577	ES	ENSMUST00000029639.12	known	0.02	1	53.5	1	61;46	n	0.00	0	38.5	0	38;39	n	0.02	2	106.5	2	107;106	y	0.00	0	53.5	0	54;53	n	0.00	0	91.0	0	96;86	n	0.00	0	58.0	0	60;56	n	0.00	0	77.5	0	77;78	n	0.00	0	42.0	0	37;47	n	0.00	0	35.5	0	37;34	n	0.00	0	56.0	0	56;56	n	0.00	0	48.5	0	56;41	n	0.00	0	75.0	0	79;71	n	ENSMUSG00000028007.14	Snx7	chr3	protein_coding	sorting nexin 7
known_NIR_11884	chr3	119514106	119514256	-	119514109	119514256	A3SS	ENSMUST00000029780.12	known	0.63	19	11	19	11	y	0.30	6	14	6	14	y	0.52	33	31	33	31	y	0.65	17	9	17	9	y	0.55	16	13	16	13	y	0.68	15	7	15	7	y	0.47	14	16	14	16	y	0.65	15	8	15	8	y	0.62	10	6	10	6	y	0.56	18	14	18	14	y	0.40	8	12	8	12	y	0.30	6	14	6	14	y	ENSMUSG00000028134.12	Ptbp2	chr3	protein_coding	polypyrimidine tract binding protein 2
known_NIR_11885	chr3	119517835	119519715	-	119517835;119518294	119518261;119519715	ES	ENSMUST00000029780.12	known	0.80	4	1.0	4	0;2	n	0.86	9	1.5	9	1;2	n	0.16	3	15.5	3	19;12	y	0.25	1	3.0	1	3;3	n	0.32	3	6.5	3	8;5	y	0.00	0	1.0	0	0;2	n	0.43	12	16.0	12	17;15	y	0.18	1	4.5	1	4;5	n	0.62	10	6.0	10	6;6	y	0.38	3	5.0	3	5;5	y	0.70	7	3.0	7	4;2	y	0.54	7	6.0	7	5;7	y	ENSMUSG00000028134.12	Ptbp2	chr3	protein_coding	polypyrimidine tract binding protein 2
known_NIR_11886	chr3	119519869	119533964	-	119519854	119533964	A3SS	ENSMUST00000029780.12	known	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.45	9	11	9	11	y	0.00	0	7	0	7	n	0.08	1	12	1	12	n	0.56	5	4	5	4	n	0.29	5	12	5	12	y	0.00	0	13	0	13	n	0.44	4	5	4	5	n	1.00	3	0	3	0	n	0.00	0	6	0	6	n	0.20	3	12	3	12	y	ENSMUSG00000028134.12	Ptbp2	chr3	protein_coding	polypyrimidine tract binding protein 2
known_NIR_11887	chr3	119554380	119555352	-	119546765	119555352	A3SS	ENSMUST00000029780.12	known	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.12	4	29	4	29	y	0.00	0	8	0	8	n	0.25	1	3	1	3	n	0.14	1	6	1	6	n	0.00	0	18	0	18	n	0.50	1	1	1	1	n	0.00	0	4	0	4	n	0.09	1	10	1	10	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	ENSMUSG00000028134.12	Ptbp2	chr3	protein_coding	polypyrimidine tract binding protein 2
known_NIR_11888	chr3	120950165	120952464	-	120950165	120952417	A5SS	ENSMUST00000106466.10	known	0.29	2	5	2	5	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.33	2	4	2	4	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.10	2	19	2	19	y	0.00	0	6	0	6	n	0.00	0	13	0	13	n	ENSMUSG00000028133.18	Rwdd3	chr3	protein_coding	RWD domain containing 3
known_NIR_11889	chr3	120952904;120953625	120953396;120965241	-	120952904	120965241	cassetteExon	ENSMUST00000106466.10	known	0.33	2.5	5	2;3	5	y	-	-	-	-	-	-	0.11	0.5	4	0;1	4	n	0.45	2.5	3	2;3	3	n	0.09	1.0	10	0;2	10	n	0.00	0.0	6	0;0	6	n	0.00	0.0	9	0;0	9	n	0.29	2.0	5	3;1	5	n	0.00	0.0	5	0;0	5	n	0.13	1.5	10	1;2	10	n	0.20	2.5	10	1;4	10	n	0.00	0.0	3	0;0	3	n	ENSMUSG00000028133.18	Rwdd3	chr3	protein_coding	RWD domain containing 3
known_NIR_11890	chr3	120952904;120953625	120953419;120965241	-	120952904	120965241	cassetteExon	ENSMUST00000106466.10	known	0.33	2.5	5	2;3	5	y	1.00	0.5	0	1;0	0	n	0.11	0.5	4	0;1	4	n	0.33	1.5	3	0;3	3	n	0.13	1.5	10	1;2	10	n	0.08	0.5	6	1;0	6	n	0.10	1.0	9	2;0	9	n	0.09	0.5	5	0;1	5	n	0.00	0.0	5	0;0	5	n	0.20	2.5	10	3;2	10	y	0.26	3.5	10	3;4	10	y	0.25	1.0	3	2;0	3	n	ENSMUSG00000028133.18	Rwdd3	chr3	protein_coding	RWD domain containing 3
known_NIR_11891	chr3	121029413	121056349	-	121029413	121040651	A5SS&ES	ENSMUST00000135818.8	known	1.00	33	0	33	0	n	0.92	24	2	24	2	y	0.96	90	4	90	4	y	0.98	40	1	40	1	n	0.91	63	6	63	6	y	0.97	78	2	78	2	y	0.91	42	4	42	4	y	0.85	46	8	46	8	y	0.88	21	3	21	3	y	0.97	70	2	70	2	y	0.92	23	2	23	2	y	0.98	47	1	47	1	n	ENSMUSG00000028132.16	Tlcd4	chr3	protein_coding	TLC domain containing 4
known_NIR_11892	chr3	121029413	121056823	-	121029413	121040651	A5SS&ES	ENSMUST00000135818.8	known	1.00	12	0	12	0	n	0.86	12	2	12	2	y	0.92	49	4	49	4	y	0.97	33	1	33	1	n	0.89	49	6	49	6	y	0.96	45	2	45	2	y	0.90	36	4	36	4	y	0.85	45	8	45	8	y	0.83	15	3	15	3	y	0.92	23	2	23	2	y	0.91	21	2	21	2	y	0.96	23	1	23	1	n	ENSMUSG00000028132.16	Tlcd4	chr3	protein_coding	TLC domain containing 4
known_NIR_11893	chr3	121029413	121056823	-	121029413	121056349	A5SS	ENSMUST00000128909.8	known	0.27	12	33	12	33	y	0.33	12	24	12	24	y	0.35	49	90	49	90	y	0.45	33	40	33	40	y	0.44	49	63	49	63	y	0.37	45	78	45	78	y	0.46	36	42	36	42	y	0.49	45	46	45	46	y	0.42	15	21	15	21	y	0.25	23	70	23	70	y	0.48	21	23	21	23	y	0.33	23	47	23	47	y	ENSMUSG00000028132.16	Tlcd4	chr3	protein_coding	TLC domain containing 4
known_NIR_11894	chr3	121029413	121065980	-	121029413	121056349	5pMXE	ENSMUST00000128909.8	known	0.00	0	33	0	33	n	0.04	1	24	1	24	n	0.02	2	90	2	90	y	0.00	0	40	0	40	n	0.02	1	63	1	63	n	0.00	0	78	0	78	n	0.00	0	42	0	42	n	0.00	0	46	0	46	n	0.09	2	21	2	21	y	0.00	0	70	0	70	n	0.00	0	23	0	23	n	0.00	0	47	0	47	n	ENSMUSG00000028132.16	Tlcd4	chr3	protein_coding	TLC domain containing 4
known_NIR_11895	chr3	121029413	121065980	-	121029413	121056823	5pMXE	ENSMUST00000029777.14	known	0.00	0	12	0	12	n	0.08	1	12	1	12	n	0.04	2	49	2	49	y	0.00	0	33	0	33	n	0.02	1	49	1	49	n	0.00	0	45	0	45	n	0.00	0	36	0	36	n	0.00	0	45	0	45	n	0.12	2	15	2	15	y	0.00	0	23	0	23	n	0.00	0	21	0	21	n	0.00	0	23	0	23	n	ENSMUSG00000028132.16	Tlcd4	chr3	protein_coding	TLC domain containing 4
known_NIR_11896	chr3	121085632	121092238	+	121085632	121092253	A3SS	ENSMUST00000039442.12	known	0.00	0	53	0	53	n	0.02	1	56	1	56	n	0.01	1	77	1	77	n	0.04	2	47	2	47	y	0.00	0	93	0	93	n	0.00	0	54	0	54	n	0.02	2	80	2	80	y	0.01	1	66	1	66	n	0.00	0	53	0	53	n	0.00	0	75	0	75	n	0.05	3	61	3	61	y	0.00	0	56	0	56	n	ENSMUSG00000039887.12	Alg14	chr3	protein_coding	asparagine-linked glycosylation 14
known_NIR_11897	chr3	121085632	121113729	+	121085632;121092407	121092238;121113729	ES	ENSMUST00000198235.2	known	0.10	5	43.0	5	0;86	n	0.00	0	30.0	0	1;59	n	0.02	1	57.0	1	1;113	n	0.00	0	32.5	0	2;63	n	0.14	8	49.5	8	0;99	n	0.00	0	35.0	0	0;70	n	0.06	4	60.0	4	2;118	y	0.00	0	33.5	0	1;66	n	0.04	1	26.5	1	0;53	n	0.00	0	61.0	0	0;122	n	0.03	1	38.0	1	3;73	n	0.10	4	35.5	4	0;71	n	ENSMUSG00000039887.12	Alg14	chr3	protein_coding	asparagine-linked glycosylation 14
known_NIR_11898	chr3	121085632	121113729	+	121085632;121092407	121092253;121113729	ES	ENSMUST00000039442.12	known	0.07	5	69.5	5	53;86	y	0.00	0	57.5	0	56;59	n	0.01	1	95.0	1	77;113	n	0.00	0	55.0	0	47;63	n	0.08	8	96.0	8	93;99	y	0.00	0	62.0	0	54;70	n	0.04	4	99.0	4	80;118	y	0.00	0	66.0	0	66;66	n	0.02	1	53.0	1	53;53	n	0.00	0	98.5	0	75;122	n	0.01	1	67.0	1	61;73	n	0.06	4	63.5	4	56;71	y	ENSMUSG00000039887.12	Alg14	chr3	protein_coding	asparagine-linked glycosylation 14
known_NIR_11899	chr3	121316170	121318476	-	121307466	121318476	A3SS	ENSMUST00000039197.9	known	0.00	0	8	0	8	n	0.17	1	5	1	5	n	0.00	0	10	0	10	n	0.00	0	17	0	17	n	0.00	0	21	0	21	n	0.07	1	13	1	13	n	0.04	1	25	1	25	n	0.20	2	8	2	8	y	0.33	3	6	3	6	n	0.12	2	15	2	15	y	0.22	2	7	2	7	n	0.08	1	12	1	12	n	ENSMUSG00000039865.9	Slc44a3	chr3	protein_coding	solute carrier family 44, member 3
known_NIR_11900	chr3	121586551	121608658	-	121586551;121590134	121590098;121608658	ES	ENSMUST00000197383.5	known	0.00	0	155.0	0	165;145	n	0.00	0	97.0	0	107;87	n	0.00	0	228.5	0	258;199	n	0.00	0	345.0	0	386;304	n	0.00	0	365.5	0	409;322	n	0.00	0	134.5	0	141;128	n	0.00	0	267.5	0	292;243	n	0.00	0	133.5	0	140;127	n	0.00	0	221.5	0	232;211	n	0.00	0	343.0	0	364;322	n	0.01	2	207.0	2	230;184	y	0.00	0	261.5	0	294;229	n	ENSMUSG00000028127.11	Abcd3	chr3	protein_coding	ATP-binding cassette, sub-family D (ALD), member 3
known_NIR_11901	chr3	121586551	121608658	-	121590134	121608658	3pMXE	ENSMUST00000199593.2	known	0.00	0	145	0	145	n	0.00	0	87	0	87	n	0.00	0	199	0	199	n	0.00	0	304	0	304	n	0.00	0	322	0	322	n	0.00	0	128	0	128	n	0.00	0	243	0	243	n	0.00	0	127	0	127	n	0.00	0	211	0	211	n	0.00	0	322	0	322	n	0.01	2	184	2	184	y	0.00	0	229	0	229	n	ENSMUSG00000028127.11	Abcd3	chr3	protein_coding	ATP-binding cassette, sub-family D (ALD), member 3
known_NIR_11902	chr3	121590134	121608369	-	121590134	121608658	A5SS	ENSMUST00000197383.5	known	0.07	11	145	11	145	y	0.06	6	87	6	87	y	0.10	21	199	21	199	y	0.05	15	304	15	304	y	0.07	23	322	23	322	y	0.08	11	128	11	128	y	0.07	19	243	19	243	y	0.05	7	127	7	127	y	0.03	7	211	7	211	y	0.08	29	322	29	322	y	0.06	11	184	11	184	y	0.07	17	229	17	229	y	ENSMUSG00000028127.11	Abcd3	chr3	protein_coding	ATP-binding cassette, sub-family D (ALD), member 3
known_NIR_11903	chr3	121747053	121775464	+	121747053;121767764	121767528;121775464	ES	ENSMUST00000037958.14	known	0.13	1	6.5	1	2;11	n	0.00	0	1.5	0	0;3	n	0.00	0	20.0	0	9;31	n	0.00	0	13.0	0	3;23	n	0.05	1	21.0	1	11;31	n	0.00	0	5.5	0	1;10	n	0.00	0	15.5	0	4;27	n	0.17	2	9.5	2	2;17	y	0.00	0	11.5	0	2;21	n	0.08	1	12.0	1	2;22	n	0.00	0	13.0	0	2;24	n	0.00	0	18.5	0	6;31	n	ENSMUSG00000039831.17	Arhgap29	chr3	protein_coding	Rho GTPase activating protein 29
known_NIR_11904	chr3	121761606	121767528	+	121747053	121767528	A5SS	ENSMUST00000037958.14	known	0.89	17	2	17	2	y	1.00	8	0	8	0	n	0.74	26	9	26	9	y	0.93	37	3	37	3	y	0.85	62	11	62	11	y	0.92	11	1	11	1	n	0.89	31	4	31	4	y	0.91	21	2	21	2	y	0.89	17	2	17	2	y	0.93	27	2	27	2	y	0.89	16	2	16	2	y	0.89	50	6	50	6	y	ENSMUSG00000039831.17	Arhgap29	chr3	protein_coding	Rho GTPase activating protein 29
known_NIR_11905	chr3	121761606	121775464	+	121767764	121775464	A5SS&ES	ENSMUST00000037958.14	known	0.00	0	11	0	11	n	0.25	1	3	1	3	n	0.00	0	31	0	31	n	0.04	1	23	1	23	n	0.09	3	31	3	31	y	0.00	0	10	0	10	n	0.00	0	27	0	27	n	0.06	1	17	1	17	n	0.00	0	21	0	21	n	0.00	0	22	0	22	n	0.00	0	24	0	24	n	0.06	2	31	2	31	y	ENSMUSG00000039831.17	Arhgap29	chr3	protein_coding	Rho GTPase activating protein 29
known_NIR_11906	chr3	121761606;121767764	121767528;121775464	+	121761606	121775464	cassetteExon	ENSMUST00000196479.5	known	1.00	14.0	0	17;11	0	n	0.85	5.5	1	8;3	1	n	1.00	28.5	0	26;31	0	n	0.97	30.0	1	37;23	1	n	0.94	46.5	3	62;31	3	y	1.00	10.5	0	11;10	0	n	1.00	29.0	0	31;27	0	n	0.95	19.0	1	21;17	1	n	1.00	19.0	0	17;21	0	n	1.00	24.5	0	27;22	0	n	1.00	20.0	0	16;24	0	n	0.95	40.5	2	50;31	2	y	ENSMUSG00000039831.17	Arhgap29	chr3	protein_coding	Rho GTPase activating protein 29
known_NIR_11907	chr3	121796351	121796885	+	121796351	121796858	A3SS	ENSMUST00000037958.14	known	0.00	0	23	0	23	n	0.08	2	24	2	24	y	0.04	2	46	2	46	y	0.00	0	33	0	33	n	0.06	5	77	5	77	y	0.00	0	17	0	17	n	0.00	0	45	0	45	n	0.00	0	37	0	37	n	0.00	0	24	0	24	n	0.00	0	59	0	59	n	0.15	5	29	5	29	y	0.00	0	55	0	55	n	ENSMUSG00000039831.17	Arhgap29	chr3	protein_coding	Rho GTPase activating protein 29
known_NIR_11908	chr3	122049259	122050325	+	122049259	122052856	A3SS	ENSMUST00000029769.14	known	0.00	0	608	0	608	n	0.00	0	512	0	512	n	0.00	0	374	0	374	n	0.00	0	751	0	751	n	0.00	0	1018	0	1018	n	0.00	0	212	0	212	n	0.00	1	803	1	803	n	0.01	2	304	2	304	y	0.01	4	557	4	557	y	0.00	0	952	0	952	n	0.00	0	577	0	577	n	0.00	3	874	3	874	y	ENSMUSG00000028124.16	Gclm	chr3	protein_coding	glutamate-cysteine ligase, modifier subunit
known_NIR_11909	chr3	122052940	122056249	+	122052940;122055576	122055517;122056249	ES	ENSMUST00000029769.14	known	0.00	0	634.5	0	563;706	n	0.00	0	519.0	0	463;575	n	0.01	2	362.0	2	332;392	y	0.00	0	784.5	0	737;832	n	0.00	0	1015.5	0	911;1120	n	0.00	0	202.0	0	180;224	n	0.00	0	824.5	0	780;869	n	0.00	0	307.5	0	266;349	n	0.00	0	538.0	0	499;577	n	0.00	2	986.0	2	903;1069	y	0.00	0	617.0	0	570;664	n	0.00	0	811.0	0	719;903	n	ENSMUSG00000028124.16	Gclm	chr3	protein_coding	glutamate-cysteine ligase, modifier subunit
known_NIR_11910	chr3	122052940	122056249	+	122055576	122056249	5pMXE	ENSMUST00000176761.3	known	0.00	0	706	0	706	n	0.00	0	575	0	575	n	0.01	2	392	2	392	y	0.00	0	832	0	832	n	0.00	0	1120	0	1120	n	0.00	0	224	0	224	n	0.00	0	869	0	869	n	0.00	0	349	0	349	n	0.00	0	577	0	577	n	0.00	2	1069	2	1069	y	0.00	0	664	0	664	n	0.00	0	903	0	903	n	ENSMUSG00000028124.16	Gclm	chr3	protein_coding	glutamate-cysteine ligase, modifier subunit
known_NIR_11911	chr3	122056451	122059877	+	122056451	122058443	3pMXE	ENSMUST00000176445.8	known	0.00	0	917	0	917	n	0.00	3	895	3	895	y	0.00	0	479	0	479	n	0.00	2	1044	2	1044	y	0.00	0	1491	0	1491	n	0.01	2	282	2	282	y	0.00	0	1199	0	1199	n	0.00	0	433	0	433	n	0.00	0	822	0	822	n	0.00	0	1382	0	1382	n	0.00	0	953	0	953	n	0.00	2	1285	2	1285	y	ENSMUSG00000028124.16	Gclm	chr3	protein_coding	glutamate-cysteine ligase, modifier subunit
known_NIR_11912	chr3	122056451	122059877	+	122056451;122058557	122058443;122059877	ES	ENSMUST00000029769.14	known	0.00	0	964.0	0	917;1011	n	0.00	3	1017.5	3	895;1140	y	0.00	0	521.5	0	479;564	n	0.00	2	1119.5	2	1044;1195	y	0.00	0	1508.5	0	1491;1526	n	0.01	2	290.0	2	282;298	y	0.00	0	1320.5	0	1199;1442	n	0.00	0	439.5	0	433;446	n	0.00	0	841.0	0	822;860	n	0.00	0	1465.0	0	1382;1548	n	0.00	0	1008.5	0	953;1064	n	0.00	2	1300.5	2	1285;1316	y	ENSMUSG00000028124.16	Gclm	chr3	protein_coding	glutamate-cysteine ligase, modifier subunit
known_NIR_11913	chr3	122248741	122265196	+	122248741	122298576	A3SS	ENSMUST00000029766.9	known	0.00	0	17	0	17	n	0.00	0	18	0	18	n	0.00	0	15	0	15	n	0.00	0	23	0	23	n	0.04	1	24	1	24	n	0.00	0	6	0	6	n	0.11	3	25	3	25	y	0.00	0	18	0	18	n	0.00	0	33	0	33	n	0.00	0	41	0	41	n	0.00	0	25	0	25	n	0.00	0	30	0	30	n	ENSMUSG00000028121.9	Bcar3	chr3	protein_coding	breast cancer anti-estrogen resistance 3
known_NIR_11914	chr3	122277641	122298576	+	122248741	122298576	A5SS	ENSMUST00000029766.9	known	0.54	20	17	20	17	y	0.49	17	18	17	18	y	0.38	9	15	9	15	y	0.63	39	23	39	23	y	0.59	34	24	34	24	y	0.71	15	6	15	6	y	0.40	17	25	17	25	y	0.47	16	18	16	18	y	0.47	29	33	29	33	y	0.53	46	41	46	41	y	0.60	38	25	38	25	y	0.59	43	30	43	30	y	ENSMUSG00000028121.9	Bcar3	chr3	protein_coding	breast cancer anti-estrogen resistance 3
known_NIR_11915	chr3	122305914	122306000	+	122304971	122306000	A5SS	ENSMUST00000029766.9	known	0.15	5	29	5	29	y	0.11	4	33	4	33	y	0.16	6	31	6	31	y	0.08	6	70	6	70	y	0.11	7	59	7	59	y	0.34	13	25	13	25	y	0.10	6	54	6	54	y	0.21	8	30	8	30	y	0.00	0	55	0	55	n	0.05	4	70	4	70	y	0.03	2	57	2	57	y	0.09	7	71	7	71	y	ENSMUSG00000028121.9	Bcar3	chr3	protein_coding	breast cancer anti-estrogen resistance 3
known_NIR_11916	chr3	122819881;122827012	122826841;122827841	-	122819881	122827841	cassetteExon	ENSMUST00000029761.14	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.12	6.5	47	9;4	47	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028116.14	Myoz2	chr3	protein_coding	myozenin 2
known_NIR_11917	chr3	126634014	126636407	+	126634014	126635134	3pMXE	ENSMUST00000145454.8	known	0.20	2	8	2	8	y	0.00	0	5	0	5	n	0.17	2	10	2	10	y	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.11	1	8	1	8	n	0.21	3	11	3	11	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.11	1	8	1	8	n	0.50	5	5	5	5	y	0.15	2	11	2	11	y	ENSMUSG00000053819.17	Camk2d	chr3	protein_coding	calcium/calmodulin-dependent protein kinase II, delta
known_NIR_11918	chr3	126634014;126635222	126635134;126636407	+	126634014	126636407	cassetteExon	ENSMUST00000106402.8	known	0.82	9.0	2	8;10	2	y	1.00	6.5	0	5;8	0	n	0.83	9.5	2	10;9	2	y	1.00	6.0	0	7;5	0	n	1.00	7.0	0	8;6	0	n	0.88	7.5	1	8;7	1	n	0.81	12.5	3	11;14	3	y	1.00	3.5	0	5;2	0	n	1.00	5.0	0	5;5	0	n	0.88	7.5	1	8;7	1	n	0.47	4.5	5	5;4	5	y	0.85	11.5	2	11;12	2	y	ENSMUSG00000053819.17	Camk2d	chr3	protein_coding	calcium/calmodulin-dependent protein kinase II, delta
known_NIR_11919	chr3	126723730;126724302	126724210;126726587	-	126723730	126726587	cassetteExon	ENSMUST00000044443.15	known	0.00	0.0	4	0;0	4	n	0.00	0.0	4	0;0	4	n	0.00	0.0	1	0;0	1	n	-	-	-	-	-	-	0.00	0.0	1	0;0	1	n	0.00	0.0	4	0;0	4	n	0.60	4.5	3	4;5	3	y	0.00	0.0	2	0;0	2	n	0.00	0.0	3	0;0	3	n	0.00	0.0	3	0;0	3	n	0.00	0.0	4	0;0	4	n	0.00	0.0	3	0;0	3	n	ENSMUSG00000032826.20	Ank2	chr3	protein_coding	ankyrin 2, brain
known_NIR_11920	chr3	127584398	127585122	+	127583820	127585122	A5SS	ENSMUST00000054483.14	known	0.04	1	23	1	23	n	0.00	0	20	0	20	n	0.01	2	376	2	376	y	0.10	3	27	3	27	y	0.16	9	47	9	47	y	0.02	3	126	3	126	y	0.12	7	53	7	53	y	0.01	1	80	1	80	n	0.06	1	16	1	16	n	0.11	1	8	1	8	n	0.45	5	6	5	6	y	0.06	1	15	1	15	n	ENSMUSG00000046688.15	Tifa	chr3	protein_coding	TRAF-interacting protein with forkhead-associated domain
known_NIR_11921	chr3	127606944	127610559	-	127609343	127610559	3pMXE	ENSMUST00000197744.2	known	0.09	5	50	5	50	y	0.05	2	42	2	42	y	0.05	5	97	5	97	y	0.06	4	68	4	68	y	0.10	8	74	8	74	y	0.03	1	38	1	38	n	0.05	3	55	3	55	y	0.05	2	35	2	35	y	0.07	3	37	3	37	y	0.05	4	76	4	76	y	0.16	4	21	4	21	y	0.05	5	98	5	98	y	ENSMUSG00000074238.7	Ap1ar	chr3	protein_coding	adaptor-related protein complex 1 associated regulatory protein
known_NIR_11922	chr3	127606944;127609343	127609245;127610559	-	127606944	127610559	cassetteExon	ENSMUST00000200409.5	known	0.90	44.0	5	38;50	5	y	0.95	41.0	2	40;42	2	y	0.95	89.0	5	81;97	5	y	0.94	59.0	4	50;68	4	y	0.90	72.0	8	70;74	8	y	0.97	36.5	1	35;38	1	n	0.95	54.0	3	53;55	3	y	0.95	35.5	2	36;35	2	y	0.92	34.0	3	31;37	3	y	0.95	70.5	4	65;76	4	y	0.87	26.0	4	31;21	4	y	0.94	84.0	5	70;98	5	y	ENSMUSG00000074238.7	Ap1ar	chr3	protein_coding	adaptor-related protein complex 1 associated regulatory protein
known_NIR_11923	chr3	127616962;127628543	127628513;127630798	-	127616962	127630798	cassetteExon	ENSMUST00000200409.5	known	0.00	0.0	30	0;0	30	n	0.02	0.5	23	0;1	23	n	0.01	1.0	72	2;0	72	n	0.09	4.5	45	5;4	45	y	0.02	1.0	51	2;0	51	n	0.04	1.0	25	1;1	25	n	0.00	0.0	39	0;0	39	n	0.00	0.0	16	0;0	16	n	0.00	0.0	19	0;0	19	n	0.06	2.5	40	3;2	40	y	0.08	1.5	17	1;2	17	n	0.00	0.0	44	0;0	44	n	ENSMUSG00000074238.7	Ap1ar	chr3	protein_coding	adaptor-related protein complex 1 associated regulatory protein
known_NIR_11924	chr3	127664649;127681634	127681604;127689683	-	127664649	127689683	cassetteExon	ENSMUST00000199273.2	known	0.00	0.0	5	0;0	5	n	0.00	0.0	10	0;0	10	n	0.06	1.0	15	1;1	15	n	0.00	0.0	14	0;0	14	n	0.00	0.0	10	0;0	10	n	0.05	0.5	10	1;0	10	n	0.00	0.0	21	0;0	21	n	0.14	0.5	3	1;0	3	n	0.00	0.0	4	0;0	4	n	0.11	2.0	16	2;2	16	y	0.00	0.0	5	0;0	5	n	0.04	0.5	13	1;0	13	n	ENSMUSG00000050549.9	Fam241a	chr3	protein_coding	family with sequence similarity 241, member A
known_NIR_11925	chr3	129684082;129687465	129687308;129688487	+	129684082	129688487	cassetteExon	ENSMUST00000029629.15	known	0.04	3.5	76	6;1	76	n	0.04	3.0	74	2;4	74	y	0.03	9.0	263	3;15	263	y	0.05	2.5	49	0;5	49	n	0.05	8.0	138	5;11	138	y	0.03	5.5	153	2;9	153	y	0.04	6.5	171	7;6	171	y	0.07	9.0	113	8;10	113	y	0.03	1.5	47	0;3	47	n	0.02	2.5	120	0;5	120	n	0.10	7.5	65	9;6	65	y	0.02	2.5	122	3;2	122	y	ENSMUSG00000027999.16	Pla2g12a	chr3	protein_coding	phospholipase A2, group XIIA
known_NIR_11926	chr3	129700126	129702235	+	129700126	129704172	A3SS	ENSMUST00000029626.9	known	0.00	0	54	0	54	n	0.00	0	41	0	41	n	0.00	0	72	0	72	n	0.00	0	58	0	58	n	0.00	0	90	0	90	n	0.00	0	25	0	25	n	0.00	0	95	0	95	n	0.00	0	35	0	35	n	0.00	0	54	0	54	n	0.00	0	108	0	108	n	0.04	2	53	2	53	y	0.00	0	92	0	92	n	ENSMUSG00000027997.10	Casp6	chr3	protein_coding	caspase 6
known_NIR_11927	chr3	129805521	129827480	-	129805521	129824181	5pMXE	ENSMUST00000168908.2	known	1.00	6	0	6	0	n	1.00	6	0	6	0	n	1.00	8	0	8	0	n	1.00	13	0	13	0	n	1.00	25	0	25	0	n	1.00	9	0	9	0	n	1.00	6	0	6	0	n	1.00	4	0	4	0	n	1.00	5	0	5	0	n	0.85	11	2	11	2	y	1.00	7	0	7	0	n	1.00	10	0	10	0	n	ENSMUSG00000001052.16	Sec24b	chr3	protein_coding	Sec24 related gene family, member B (S. cerevisiae)
known_NIR_11928	chr3	129805521	129827480	-	129805521;129814291	129814187;129827480	ES	ENSMUST00000001079.15	known	0.71	6	2.5	6	2;3	y	0.48	6	6.5	6	8;5	y	0.36	8	14.0	8	13;15	y	0.67	13	6.5	13	9;4	y	0.68	25	11.5	25	13;10	y	0.51	9	8.5	9	8;9	y	0.35	6	11.0	6	9;13	y	0.44	4	5.0	4	4;6	y	0.77	5	1.5	5	3;0	n	0.65	11	6.0	11	5;7	y	0.74	7	2.5	7	3;2	y	0.77	10	3.0	10	4;2	y	ENSMUSG00000001052.16	Sec24b	chr3	protein_coding	Sec24 related gene family, member B (S. cerevisiae)
known_NIR_11929	chr3	130522951	130523838	-	130522951	130523770	A5SS	ENSMUST00000062601.14	known	0.05	3	59	3	59	y	0.11	6	51	6	51	y	0.11	8	65	8	65	y	0.07	4	54	4	54	y	0.07	6	84	6	84	y	0.08	3	33	3	33	y	0.06	3	51	3	51	y	0.05	1	21	1	21	n	0.09	5	49	5	49	y	0.00	0	63	0	63	n	0.07	5	71	5	71	y	0.02	2	85	2	85	y	ENSMUSG00000062006.13	Rpl34	chr3	protein_coding	ribosomal protein L34
known_NIR_11930	chr3	130522951	130523838	-	130522951	130523967	A5SS	ENSMUST00000079085.11	known	0.00	3	812	3	812	y	0.01	6	882	6	882	y	0.01	8	1056	8	1056	y	0.01	4	775	4	775	y	0.01	6	1143	6	1143	y	0.01	3	579	3	579	y	0.00	3	1067	3	1067	y	0.00	1	603	1	603	n	0.01	5	829	5	829	y	0.00	0	1022	0	1022	n	0.01	5	992	5	992	y	0.00	2	990	2	990	y	ENSMUSG00000062006.13	Rpl34	chr3	protein_coding	ribosomal protein L34
known_NIR_11931	chr3	130522951	130523967	-	130522951	130523770	A5SS	ENSMUST00000062601.14	known	0.93	812	59	812	59	y	0.95	882	51	882	51	y	0.94	1056	65	1056	65	y	0.93	775	54	775	54	y	0.93	1143	84	1143	84	y	0.95	579	33	579	33	y	0.95	1067	51	1067	51	y	0.97	603	21	603	21	y	0.94	829	49	829	49	y	0.94	1022	63	1022	63	y	0.93	992	71	992	71	y	0.92	990	85	990	85	y	ENSMUSG00000062006.13	Rpl34	chr3	protein_coding	ribosomal protein L34
known_NIR_11932	chr3	131088704	131089037	-	131087333	131089037	A3SS	ENSMUST00000106337.7	known	0.04	1	23	1	23	n	0.00	0	30	0	30	n	0.00	0	12	0	12	n	0.00	0	33	0	33	n	0.00	0	26	0	26	n	0.00	0	18	0	18	n	0.00	0	25	0	25	n	0.11	2	16	2	16	y	0.00	0	50	0	50	n	0.03	2	58	2	58	y	0.00	0	50	0	50	n	0.00	0	39	0	39	n	ENSMUSG00000027983.14	Cyp2u1	chr3	protein_coding	cytochrome P450, family 2, subfamily u, polypeptide 1
known_NIR_11933	chr3	131136109	131137084	-	131136109	131196169	A5SS	ENSMUST00000197057.2	known	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.40	4	6	4	6	y	0.27	3	8	3	8	y	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	ENSMUSG00000050931.8	Sgms2	chr3	protein_coding	sphingomyelin synthase 2
known_NIR_11934	chr3	131136109	131196891	-	131136109	131196169	5pMXE	ENSMUST00000197057.2	known	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.14	1	6	1	6	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.33	1	2	1	2	n	0.25	1	3	1	3	n	0.27	3	8	3	8	y	0.00	0	4	0	4	n	0.00	0	9	0	9	n	ENSMUSG00000050931.8	Sgms2	chr3	protein_coding	sphingomyelin synthase 2
known_NIR_11935	chr3	131270744	131271353	+	131270744	131285072	A3SS	ENSMUST00000029666.14	known	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.09	4	41	4	41	y	0.05	1	18	1	18	n	0.23	3	10	3	10	y	0.05	1	19	1	19	n	0.21	5	19	5	19	y	0.05	1	18	1	18	n	0.00	0	22	0	22	n	0.12	2	15	2	15	y	0.00	0	6	0	6	n	0.17	4	20	4	20	y	ENSMUSG00000028032.14	Papss1	chr3	protein_coding	3'-phosphoadenosine 5'-phosphosulfate synthase 1
known_NIR_11936	chr3	131270744;131271821	131271353;131273263	+	131270744	131273263	cassetteExon	ENSMUST00000197402.5	known	0.11	0.5	4	0;1	4	n	0.10	1.0	9	0;2	9	n	0.11	3.0	24	4;2	24	y	0.10	1.0	9	1;1	9	n	0.06	2.0	29	3;1	29	n	0.13	2.0	13	1;3	13	n	0.54	3.5	3	5;2	3	y	0.08	1.0	12	1;1	12	n	0.17	1.0	5	0;2	5	n	0.08	1.0	12	2;0	12	n	0.00	0.0	12	0;0	12	n	0.19	3.0	13	4;2	13	y	ENSMUSG00000028032.14	Papss1	chr3	protein_coding	3'-phosphoadenosine 5'-phosphosulfate synthase 1
known_NIR_11937	chr3	131270744;131273439	131273263;131285072	+	131270744	131285072	cassetteExon	ENSMUST00000029666.14	known	0.47	8.0	9	4;12	9	y	0.40	6.0	9	9;3	9	y	0.36	23.0	41	24;22	41	y	0.40	12.0	18	9;15	18	y	0.69	22.0	10	29;15	10	y	0.46	16.5	19	13;20	19	y	0.28	7.5	19	3;12	19	y	0.41	12.5	18	12;13	18	y	0.24	7.0	22	5;9	22	y	0.44	12.0	15	12;12	15	y	0.61	9.5	6	12;7	6	y	0.32	9.5	20	13;6	20	y	ENSMUSG00000028032.14	Papss1	chr3	protein_coding	3'-phosphoadenosine 5'-phosphosulfate synthase 1
known_NIR_11938	chr3	132335669	132340533	+	132335669	132340484	A3SS	ENSMUST00000212804.2	known	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.00	0	10	0	10	n	0.12	2	14	2	14	y	0.00	0	20	0	20	n	0.33	2	4	2	4	n	0.00	0	15	0	15	n	0.07	1	13	1	13	n	0.00	0	5	0	5	n	0.12	2	15	2	15	y	0.00	0	5	0	5	n	0.00	0	14	0	14	n	ENSMUSG00000091721.5	Gimd1	chr3	protein_coding	GIMAP family P-loop NTPase domain containing 1
known_NIR_11939	chr3	132340698	132350132	+	132340878	132350132	A5SS	ENSMUST00000212804.2	known	0.00	0	22	0	22	n	0.05	1	20	1	20	n	0.00	0	16	0	16	n	0.00	0	12	0	12	n	0.13	6	39	6	39	y	0.00	0	5	0	5	n	0.06	1	15	1	15	n	0.17	4	19	4	19	y	0.16	3	16	3	16	y	0.05	1	21	1	21	n	0.23	3	10	3	10	y	0.00	0	20	0	20	n	ENSMUSG00000091721.5	Gimd1	chr3	protein_coding	GIMAP family P-loop NTPase domain containing 1
known_NIR_11940	chr3	132382899	132389969	-	132382899	132389554	5pMXE	ENSMUST00000029663.11	known	0.00	0	67	0	67	n	0.00	0	56	0	56	n	0.01	1	80	1	80	n	0.00	0	77	0	77	n	0.00	0	73	0	73	n	0.00	0	55	0	55	n	0.00	0	78	0	78	n	0.00	0	49	0	49	n	0.00	0	41	0	41	n	0.03	2	70	2	70	y	0.00	0	58	0	58	n	0.01	1	73	1	73	n	ENSMUSG00000028029.12	Aimp1	chr3	protein_coding	aminoacyl tRNA synthetase complex-interacting multifunctional protein 1
known_NIR_11941	chr3	132480357	132501884	+	132480357	132507265	A3SS	ENSMUST00000169172.5	known	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.07	1	13	1	13	n	0.00	0	6	0	6	n	0.08	1	11	1	11	n	0.00	0	6	0	6	n	0.15	2	11	2	11	y	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.09	1	10	1	10	n	0.00	0	10	0	10	n	0.17	1	5	1	5	n	ENSMUSG00000028030.13	Tbck	chr3	protein_coding	TBC1 domain containing kinase
known_NIR_11942	chr3	133082349	133083611	+	133082349	133083608	A3SS	ENSMUST00000029644.16	known	0.03	5	148	5	148	y	0.10	18	163	18	163	y	0.04	5	114	5	114	y	0.08	10	118	10	118	y	0.07	13	168	13	168	y	0.13	12	80	12	80	y	0.07	15	199	15	199	y	0.03	2	75	2	75	y	0.07	13	177	13	177	y	0.05	13	268	13	268	y	0.07	16	218	16	218	y	0.04	7	153	7	153	y	ENSMUSG00000028013.17	Ppa2	chr3	protein_coding	pyrophosphatase (inorganic) 2
known_NIR_11943	chr3	133082402	133083608	+	133082349	133083608	A5SS	ENSMUST00000029644.16	known	0.01	1	148	1	148	n	0.01	1	163	1	163	n	0.01	1	114	1	114	n	0.01	1	118	1	118	n	0.00	0	168	0	168	n	0.02	2	80	2	80	y	0.01	2	199	2	199	y	0.00	0	75	0	75	n	0.01	1	177	1	177	n	0.01	2	268	2	268	y	0.00	0	218	0	218	n	0.00	0	153	0	153	n	ENSMUSG00000028013.17	Ppa2	chr3	protein_coding	pyrophosphatase (inorganic) 2
known_NIR_11944	chr3	134987129	134991349	+	134987129	134991276	A3SS	ENSMUST00000120397.8	known	0.27	12	33	12	33	y	0.18	6	27	6	27	y	1.00	1	0	1	0	n	0.17	8	38	8	38	y	0.28	5	13	5	13	y	0.00	0	1	0	1	n	0.21	6	23	6	23	y	0.36	5	9	5	9	y	0.25	8	24	8	24	y	0.20	12	48	12	48	y	0.27	17	45	17	45	y	0.24	14	45	14	45	y	ENSMUSG00000028167.16	Bdh2	chr3	protein_coding	3-hydroxybutyrate dehydrogenase, type 2
known_NIR_11945	chr3	134994448	134995316	+	134994100	134995316	A5SS	ENSMUST00000120397.8	known	0.08	4	44	4	44	y	0.09	3	32	3	32	y	0.00	0	4	0	4	n	0.13	8	53	8	53	y	0.04	1	26	1	26	n	0.00	0	3	0	3	n	0.05	2	37	2	37	y	0.00	0	5	0	5	n	0.09	4	42	4	42	y	0.10	8	70	8	70	y	0.09	5	48	5	48	y	0.10	8	76	8	76	y	ENSMUSG00000028167.16	Bdh2	chr3	protein_coding	3-hydroxybutyrate dehydrogenase, type 2
known_NIR_11946	chr3	135144193	135145405	+	135144113	135145405	A5SS	ENSMUST00000106291.10	known	0.20	7	28	7	28	y	0.08	2	24	2	24	y	0.10	8	73	8	73	y	0.15	9	53	9	53	y	0.18	9	41	9	41	y	0.00	0	18	0	18	n	0.11	3	25	3	25	y	0.19	5	22	5	22	y	0.17	7	33	7	33	y	0.12	5	37	5	37	y	0.10	3	27	3	27	y	0.14	6	38	6	38	y	ENSMUSG00000078578.10	Ube2d3	chr3	protein_coding	ubiquitin-conjugating enzyme E2D 3
known_NIR_11947	chr3	135144323	135145405	+	135144113	135145405	A5SS	ENSMUST00000106291.10	known	0.00	0	28	0	28	n	0.00	0	24	0	24	n	0.03	2	73	2	73	y	0.05	3	53	3	53	y	0.05	2	41	2	41	y	0.05	1	18	1	18	n	0.00	0	25	0	25	n	0.04	1	22	1	22	n	0.15	6	33	6	33	y	0.07	3	37	3	37	y	0.10	3	27	3	27	y	0.03	1	38	1	38	n	ENSMUSG00000078578.10	Ube2d3	chr3	protein_coding	ubiquitin-conjugating enzyme E2D 3
known_NIR_11948	chr3	135144323	135145405	+	135144193	135145405	A5SS	ENSMUST00000199613.5	known	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.20	2	8	2	8	y	0.25	3	9	3	9	y	0.18	2	9	2	9	y	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.46	6	7	6	7	y	0.38	3	5	3	5	n	0.50	3	3	3	3	n	0.14	1	6	1	6	n	ENSMUSG00000078578.10	Ube2d3	chr3	protein_coding	ubiquitin-conjugating enzyme E2D 3
known_NIR_11949	chr3	135144323	135145405	+	135144459	135145405	A5SS	ENSMUST00000166033.6	known	0.00	0	109	0	109	n	0.00	0	77	0	77	n	0.01	2	191	2	191	y	0.02	3	170	3	170	y	0.01	2	157	2	157	y	0.01	1	68	1	68	n	0.00	0	144	0	144	n	0.01	1	79	1	79	n	0.06	6	95	6	95	y	0.02	3	137	3	137	y	0.03	3	85	3	85	y	0.01	1	123	1	123	n	ENSMUSG00000078578.10	Ube2d3	chr3	protein_coding	ubiquitin-conjugating enzyme E2D 3
known_NIR_11950	chr3	135144459	135145405	+	135144113	135145405	A5SS	ENSMUST00000106291.10	known	0.80	109	28	109	28	y	0.76	77	24	77	24	y	0.72	191	73	191	73	y	0.76	170	53	170	53	y	0.79	157	41	157	41	y	0.79	68	18	68	18	y	0.85	144	25	144	25	y	0.78	79	22	79	22	y	0.74	95	33	95	33	y	0.79	137	37	137	37	y	0.76	85	27	85	27	y	0.76	123	38	123	38	y	ENSMUSG00000078578.10	Ube2d3	chr3	protein_coding	ubiquitin-conjugating enzyme E2D 3
known_NIR_11951	chr3	135144459	135145405	+	135144193	135145405	A5SS	ENSMUST00000199613.5	known	0.94	109	7	109	7	y	0.97	77	2	77	2	y	0.96	191	8	191	8	y	0.95	170	9	170	9	y	0.95	157	9	157	9	y	1.00	68	0	68	0	n	0.98	144	3	144	3	y	0.94	79	5	79	5	y	0.93	95	7	95	7	y	0.96	137	5	137	5	y	0.97	85	3	85	3	y	0.95	123	6	123	6	y	ENSMUSG00000078578.10	Ube2d3	chr3	protein_coding	ubiquitin-conjugating enzyme E2D 3
known_NIR_11952	chr3	135144459	135145422	+	135144459	135145405	A3SS	ENSMUST00000166033.6	known	0.00	0	109	0	109	n	0.00	0	77	0	77	n	0.02	4	191	4	191	y	0.00	0	170	0	170	n	0.00	0	157	0	157	n	0.00	0	68	0	68	n	0.00	0	144	0	144	n	0.00	0	79	0	79	n	0.00	0	95	0	95	n	0.00	0	137	0	137	n	0.00	0	85	0	85	n	0.00	0	123	0	123	n	ENSMUSG00000078578.10	Ube2d3	chr3	protein_coding	ubiquitin-conjugating enzyme E2D 3
known_NIR_11953	chr3	135144625	135145405	+	135144113	135145405	A5SS	ENSMUST00000106291.10	known	0.87	184	28	184	28	y	0.84	130	24	130	24	y	0.80	290	73	290	73	y	0.80	208	53	208	53	y	0.87	278	41	278	41	y	0.87	118	18	118	18	y	0.89	207	25	207	25	y	0.85	129	22	129	22	y	0.82	149	33	149	33	y	0.87	239	37	239	37	y	0.87	187	27	187	27	y	0.87	253	38	253	38	y	ENSMUSG00000078578.10	Ube2d3	chr3	protein_coding	ubiquitin-conjugating enzyme E2D 3
known_NIR_11954	chr3	135144625	135145405	+	135144193	135145405	A5SS	ENSMUST00000199613.5	known	0.96	184	7	184	7	y	0.98	130	2	130	2	y	0.97	290	8	290	8	y	0.96	208	9	208	9	y	0.97	278	9	278	9	y	1.00	118	0	118	0	n	0.99	207	3	207	3	y	0.96	129	5	129	5	y	0.96	149	7	149	7	y	0.98	239	5	239	5	y	0.98	187	3	187	3	y	0.98	253	6	253	6	y	ENSMUSG00000078578.10	Ube2d3	chr3	protein_coding	ubiquitin-conjugating enzyme E2D 3
known_NIR_11955	chr3	135144625	135145405	+	135144323	135145405	A5SS	ENSMUST00000196591.5	known	1.00	184	0	184	0	n	1.00	130	0	130	0	n	0.99	290	2	290	2	y	0.99	208	3	208	3	y	0.99	278	2	278	2	y	0.99	118	1	118	1	n	1.00	207	0	207	0	n	0.99	129	1	129	1	n	0.96	149	6	149	6	y	0.99	239	3	239	3	y	0.98	187	3	187	3	y	1.00	253	1	253	1	n	ENSMUSG00000078578.10	Ube2d3	chr3	protein_coding	ubiquitin-conjugating enzyme E2D 3
known_NIR_11956	chr3	135144625	135145405	+	135144459	135145405	A5SS	ENSMUST00000166033.6	known	0.63	184	109	184	109	y	0.63	130	77	130	77	y	0.60	290	191	290	191	y	0.55	208	170	208	170	y	0.64	278	157	278	157	y	0.63	118	68	118	68	y	0.59	207	144	207	144	y	0.62	129	79	129	79	y	0.61	149	95	149	95	y	0.64	239	137	239	137	y	0.69	187	85	187	85	y	0.67	253	123	253	123	y	ENSMUSG00000078578.10	Ube2d3	chr3	protein_coding	ubiquitin-conjugating enzyme E2D 3
known_NIR_11957	chr3	135144631	135145405	+	135144113	135145405	A5SS	ENSMUST00000106291.10	known	0.10	3	28	3	28	y	0.04	1	24	1	24	n	0.09	7	73	7	73	y	0.12	7	53	7	53	y	0.15	7	41	7	41	y	0.22	5	18	5	18	y	0.00	0	25	0	25	n	0.08	2	22	2	22	y	0.13	5	33	5	33	y	0.07	3	37	3	37	y	0.16	5	27	5	27	y	0.05	2	38	2	38	y	ENSMUSG00000078578.10	Ube2d3	chr3	protein_coding	ubiquitin-conjugating enzyme E2D 3
known_NIR_11958	chr3	135144631	135145405	+	135144193	135145405	A5SS	ENSMUST00000199613.5	known	0.30	3	7	3	7	y	0.33	1	2	1	2	n	0.47	7	8	7	8	y	0.44	7	9	7	9	y	0.44	7	9	7	9	y	1.00	5	0	5	0	n	0.00	0	3	0	3	n	0.29	2	5	2	5	n	0.42	5	7	5	7	y	0.38	3	5	3	5	n	0.62	5	3	5	3	n	0.25	2	6	2	6	n	ENSMUSG00000078578.10	Ube2d3	chr3	protein_coding	ubiquitin-conjugating enzyme E2D 3
known_NIR_11959	chr3	135144631	135145405	+	135144323	135145405	A5SS	ENSMUST00000196591.5	known	1.00	3	0	3	0	n	1.00	1	0	1	0	n	0.78	7	2	7	2	n	0.70	7	3	7	3	y	0.78	7	2	7	2	n	0.83	5	1	5	1	n	-	-	-	-	-	-	0.67	2	1	2	1	n	0.45	5	6	5	6	y	0.50	3	3	3	3	n	0.62	5	3	5	3	n	0.67	2	1	2	1	n	ENSMUSG00000078578.10	Ube2d3	chr3	protein_coding	ubiquitin-conjugating enzyme E2D 3
known_NIR_11960	chr3	135144631	135145405	+	135144459	135145405	A5SS	ENSMUST00000166033.6	known	0.03	3	109	3	109	y	0.01	1	77	1	77	n	0.04	7	191	7	191	y	0.04	7	170	7	170	y	0.04	7	157	7	157	y	0.07	5	68	5	68	y	0.00	0	144	0	144	n	0.02	2	79	2	79	y	0.05	5	95	5	95	y	0.02	3	137	3	137	y	0.06	5	85	5	85	y	0.02	2	123	2	123	y	ENSMUSG00000078578.10	Ube2d3	chr3	protein_coding	ubiquitin-conjugating enzyme E2D 3
known_NIR_11961	chr3	135144631	135145405	+	135144625	135145405	A5SS	ENSMUST00000197859.5	known	0.02	3	184	3	184	y	0.01	1	130	1	130	n	0.02	7	290	7	290	y	0.03	7	208	7	208	y	0.02	7	278	7	278	y	0.04	5	118	5	118	y	0.00	0	207	0	207	n	0.02	2	129	2	129	y	0.03	5	149	5	149	y	0.01	3	239	3	239	y	0.03	5	187	5	187	y	0.01	2	253	2	253	y	ENSMUSG00000078578.10	Ube2d3	chr3	protein_coding	ubiquitin-conjugating enzyme E2D 3
known_NIR_11962	chr3	135145559	135147266	+	135145559	135160947	A3SS	ENSMUST00000196446.5	known	0.00	0	617	0	617	n	0.00	1	487	1	487	n	0.00	1	944	1	944	n	0.00	0	744	0	744	n	0.00	0	814	0	814	n	0.00	0	386	0	386	n	0.00	0	750	0	750	n	0.00	0	422	0	422	n	0.01	3	596	3	596	y	0.00	2	812	2	812	y	0.00	2	552	2	552	y	0.00	0	847	0	847	n	ENSMUSG00000078578.10	Ube2d3	chr3	protein_coding	ubiquitin-conjugating enzyme E2D 3
known_NIR_11963	chr3	135161138;135162405	135162362;135164559	+	135161138	135164559	cassetteExon	ENSMUST00000196446.5	known	0.02	12.0	712	11;13	712	y	0.03	14.5	500	16;13	500	y	0.01	8.0	997	7;9	997	y	0.01	5.5	683	5;6	683	y	0.01	8.5	815	11;6	815	y	0.01	2.5	396	2;3	396	y	0.02	14.5	770	14;15	770	y	0.02	8.5	467	8;9	467	y	0.02	8.5	558	8;9	558	y	0.02	18.5	809	20;17	809	y	0.03	18.5	592	18;19	592	y	0.01	13.0	899	13;13	899	y	ENSMUSG00000078578.10	Ube2d3	chr3	protein_coding	ubiquitin-conjugating enzyme E2D 3
known_NIR_11964	chr3	135168804;135169531	135169482;135170956	+	135168804	135170956	cassetteExon	ENSMUST00000196446.5	known	0.00	0.5	695	1;0	695	n	0.00	0.5	614	1;0	614	n	0.00	0.0	1008	0;0	1008	n	0.00	0.0	758	0;0	758	n	0.00	0.0	868	0;0	868	n	0.00	0.0	446	0;0	446	n	0.05	41.5	878	43;40	878	y	0.00	0.0	462	0;0	462	n	0.00	1.5	608	3;0	608	n	0.00	0.0	876	0;0	876	n	0.00	0.0	634	0;0	634	n	0.00	1.0	918	2;0	918	n	ENSMUSG00000078578.10	Ube2d3	chr3	protein_coding	ubiquitin-conjugating enzyme E2D 3
known_NIR_11965	chr3	135217734	135223664	+	135217734;135218208	135218107;135223664	ES	ENSMUST00000131610.8	known	0.88	11	1.5	11	3;0	n	0.72	9	3.5	9	3;4	y	1.00	17	0.0	17	0;0	n	0.96	27	1.0	27	0;2	n	0.95	26	1.5	26	2;1	n	0.62	4	2.5	4	4;1	n	0.93	20	1.5	20	0;3	n	0.91	10	1.0	10	2;0	n	1.00	9	0.0	9	0;0	n	0.95	21	1.0	21	1;1	n	0.90	9	1.0	9	2;0	n	1.00	23	0.0	23	0;0	n	ENSMUSG00000028164.16	Manba	chr3	protein_coding	mannosidase, beta A, lysosomal
known_NIR_11966	chr3	135260685	135262385	+	135260685	135268966	A3SS	ENSMUST00000029814.10	known	0.00	0	23	0	23	n	0.00	0	18	0	18	n	0.07	2	25	2	25	y	0.00	0	23	0	23	n	0.02	1	55	1	55	n	0.00	0	21	0	21	n	0.02	1	41	1	41	n	0.00	0	22	0	22	n	0.00	0	26	0	26	n	0.00	0	33	0	33	n	0.00	0	24	0	24	n	0.00	0	22	0	22	n	ENSMUSG00000028164.16	Manba	chr3	protein_coding	mannosidase, beta A, lysosomal
known_NIR_11967	chr3	135291276	135296077	-	135291276;135295265	135295088;135296077	ES	ENSMUST00000029812.14	known	0.12	6	45.0	6	45;45	y	0.15	7	40.0	7	51;29	y	0.09	5	50.5	5	63;38	y	0.06	3	47.5	3	58;37	y	0.11	7	57.0	7	63;51	y	0.09	3	31.5	3	35;28	y	0.03	2	65.0	2	80;50	y	0.10	4	36.0	4	44;28	y	0.11	5	40.5	5	39;42	y	0.10	5	44.0	5	49;39	y	0.17	9	42.5	9	47;38	y	0.04	2	45.5	2	59;32	y	ENSMUSG00000028163.18	Nfkb1	chr3	protein_coding	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105
known_NIR_11968	chr3	135531561	135532001	+	135531292	135532001	A5SS	ENSMUST00000081978.10	known	0.60	3	2	3	2	n	0.86	6	1	6	1	n	-	-	-	-	-	-	1.00	7	0	7	0	n	0.85	11	2	11	2	y	1.00	5	0	5	0	n	1.00	6	0	6	0	n	1.00	1	0	1	0	n	0.80	4	1	4	1	n	0.86	6	1	6	1	n	1.00	5	0	5	0	n	1.00	10	0	10	0	n	ENSMUSG00000053897.16	Slc39a8	chr3	protein_coding	solute carrier family 39 (metal ion transporter), member 8
known_NIR_11969	chr3	135531844	135532001	+	135531561	135532001	A5SS	ENSMUST00000139953.2	known	0.00	0	3	0	3	n	0.14	1	6	1	6	n	1.00	2	0	2	0	n	0.12	1	7	1	7	n	0.39	7	11	7	11	y	0.38	3	5	3	5	n	0.62	10	6	10	6	y	0.67	2	1	2	1	n	0.00	0	4	0	4	n	0.45	5	6	5	6	y	0.44	4	5	4	5	n	0.09	1	10	1	10	n	ENSMUSG00000053897.16	Slc39a8	chr3	protein_coding	solute carrier family 39 (metal ion transporter), member 8
known_NIR_11970	chr3	136634380;136637801	136637772;136640790	+	136634380	136640790	cassetteExon	ENSMUST00000070198.14	known	0.00	0.0	63	0;0	63	n	0.00	0.0	42	0;0	42	n	0.00	0.0	32	0;0	32	n	0.00	0.0	44	0;0	44	n	0.00	0.0	63	0;0	63	n	0.03	0.5	18	1;0	18	n	0.08	5.0	61	5;5	61	y	0.00	0.0	33	0;0	33	n	0.00	0.0	49	0;0	49	n	0.00	0.0	83	0;0	83	n	0.00	0.0	41	0;0	41	n	0.00	0.0	81	0;0	81	n	ENSMUSG00000028161.18	Ppp3ca	chr3	protein_coding	protein phosphatase 3, catalytic subunit, alpha isoform
known_NIR_11971	chr3	137570447	137570894	+	137570457	137570894	A5SS	ENSMUST00000041045.14	known	0.00	0	286	0	286	n	0.00	0	310	0	310	n	0.02	4	235	4	235	y	0.00	0	299	0	299	n	0.00	0	334	0	334	n	0.00	0	134	0	134	n	0.00	0	383	0	383	n	0.00	0	124	0	124	n	0.00	0	297	0	297	n	0.00	0	460	0	460	n	0.01	5	380	5	380	y	0.00	0	427	0	427	n	ENSMUSG00000037894.14	H2az1	chr3	protein_coding	H2A.Z variant histone 1
known_NIR_11972	chr3	137571394	137571841	+	137571394	137571772	A3SS	ENSMUST00000041045.14	known	0.00	0	251	0	251	n	0.00	0	232	0	232	n	0.01	3	235	3	235	y	0.00	0	203	0	203	n	0.01	4	295	4	295	y	0.00	0	121	0	121	n	0.01	3	331	3	331	y	0.00	0	131	0	131	n	0.01	2	249	2	249	y	0.00	1	397	1	397	n	0.01	2	273	2	273	y	0.00	0	416	0	416	n	ENSMUSG00000037894.14	H2az1	chr3	protein_coding	H2A.Z variant histone 1
known_NIR_11973	chr3	137625716	137632570	+	137625716;137630931	137630873;137632570	ES	ENSMUST00000197064.5	known	0.00	0	50.5	0	58;43	n	0.00	0	38.0	0	38;38	n	0.03	2	73.5	2	74;73	y	0.04	2	43.5	2	42;45	y	0.00	0	59.5	0	58;61	n	0.00	0	38.5	0	39;38	n	0.00	0	64.5	0	67;62	n	0.00	0	30.5	0	28;33	n	0.00	0	49.0	0	52;46	n	0.00	0	60.5	0	63;58	n	0.00	0	50.0	0	50;50	n	0.00	0	55.0	0	58;52	n	ENSMUSG00000091512.6	Lamtor3	chr3	protein_coding	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3
known_NIR_11974	chr3	137625716	137632570	+	137630931	137632570	5pMXE	ENSMUST00000200107.2	known	0.00	0	43	0	43	n	0.00	0	38	0	38	n	0.03	2	73	2	73	y	0.04	2	45	2	45	y	0.00	0	61	0	61	n	0.00	0	38	0	38	n	0.00	0	62	0	62	n	0.00	0	33	0	33	n	0.00	0	46	0	46	n	0.00	0	58	0	58	n	0.00	0	50	0	50	n	0.00	0	52	0	52	n	ENSMUSG00000091512.6	Lamtor3	chr3	protein_coding	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3
known_NIR_11975	chr3	137831006	137839761	-	137831006	137837001	5pMXE	ENSMUST00000029805.13	known	0.07	12	165	12	165	y	0.08	8	94	8	94	y	0.02	5	276	5	276	y	0.05	15	295	15	295	y	0.03	13	396	13	396	y	0.05	8	164	8	164	y	0.05	17	303	17	303	y	0.03	7	259	7	259	y	0.07	11	157	11	157	y	0.07	22	303	22	303	y	0.04	8	178	8	178	y	0.07	16	200	16	200	y	ENSMUSG00000028158.15	Mttp	chr3	protein_coding	microsomal triglyceride transfer protein
known_NIR_11976	chr3	137852154	137853136	+	137849357	137853136	A5SS	ENSMUST00000040321.13	known	0.50	2	2	2	2	n	0.67	2	1	2	1	n	0.54	7	6	7	6	y	0.83	5	1	5	1	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.80	4	1	4	1	n	1.00	6	0	6	0	n	0.29	2	5	2	5	n	0.40	2	3	2	3	n	1.00	2	0	2	0	n	0.40	4	6	4	6	y	ENSMUSG00000004127.13	Trmt10a	chr3	protein_coding	tRNA methyltransferase 10A
known_NIR_11977	chr3	137923661	137943362	-	137917013	137943362	A3SS	ENSMUST00000185122.8	known	0.16	4	21	4	21	y	0.33	13	26	13	26	y	0.00	0	7	0	7	n	0.22	11	39	11	39	y	0.21	7	26	7	26	y	0.00	0	6	0	6	n	0.35	16	30	16	30	y	0.20	2	8	2	8	y	0.45	15	18	15	18	y	0.29	22	55	22	55	y	0.45	18	22	18	22	y	0.39	14	22	14	22	y	ENSMUSG00000099146.8	0610031O16Rik	chr3	lncRNA	RIKEN cDNA 0610031O16 gene
known_NIR_11978	chr3	137932713	137943362	-	137917013	137943362	A3SS	ENSMUST00000185122.8	known	0.40	14	21	14	21	y	0.42	19	26	19	26	y	0.30	3	7	3	7	y	0.29	16	39	16	39	y	0.45	21	26	21	26	y	0.25	2	6	2	6	n	0.21	8	30	8	30	y	0.27	3	8	3	8	y	0.54	21	18	21	18	y	0.25	18	55	18	55	y	0.60	33	22	33	22	y	0.60	33	22	33	22	y	ENSMUSG00000099146.8	0610031O16Rik	chr3	lncRNA	RIKEN cDNA 0610031O16 gene
known_NIR_11979	chr3	137932713	137943362	-	137923661	137943362	A3SS	ENSMUST00000183783.8	known	0.78	14	4	14	4	y	0.59	19	13	19	13	y	1.00	3	0	3	0	n	0.59	16	11	16	11	y	0.75	21	7	21	7	y	1.00	2	0	2	0	n	0.33	8	16	8	16	y	0.60	3	2	3	2	n	0.58	21	15	21	15	y	0.45	18	22	18	22	y	0.65	33	18	33	18	y	0.70	33	14	33	14	y	ENSMUSG00000099146.8	0610031O16Rik	chr3	lncRNA	RIKEN cDNA 0610031O16 gene
known_NIR_11980	chr3	137935711	137943362	-	137917013	137943362	A3SS	ENSMUST00000185122.8	known	0.70	50	21	50	21	y	0.68	54	26	54	26	y	0.53	8	7	8	7	y	0.60	59	39	59	39	y	0.69	58	26	58	26	y	0.54	7	6	7	6	y	0.61	47	30	47	30	y	0.76	25	8	25	8	y	0.81	75	18	75	18	y	0.63	93	55	93	55	y	0.77	73	22	73	22	y	0.82	98	22	98	22	y	ENSMUSG00000099146.8	0610031O16Rik	chr3	lncRNA	RIKEN cDNA 0610031O16 gene
known_NIR_11981	chr3	137935711	137943362	-	137923661	137943362	A3SS	ENSMUST00000183783.8	known	0.93	50	4	50	4	y	0.81	54	13	54	13	y	1.00	8	0	8	0	n	0.84	59	11	59	11	y	0.89	58	7	58	7	y	1.00	7	0	7	0	n	0.75	47	16	47	16	y	0.93	25	2	25	2	y	0.83	75	15	75	15	y	0.81	93	22	93	22	y	0.80	73	18	73	18	y	0.88	98	14	98	14	y	ENSMUSG00000099146.8	0610031O16Rik	chr3	lncRNA	RIKEN cDNA 0610031O16 gene
known_NIR_11982	chr3	137935711	137943362	-	137932713	137943362	A3SS	ENSMUST00000184166.8	known	0.78	50	14	50	14	y	0.74	54	19	54	19	y	0.73	8	3	8	3	y	0.79	59	16	59	16	y	0.73	58	21	58	21	y	0.78	7	2	7	2	n	0.85	47	8	47	8	y	0.89	25	3	25	3	y	0.78	75	21	75	21	y	0.84	93	18	93	18	y	0.69	73	33	73	33	y	0.75	98	33	98	33	y	ENSMUSG00000099146.8	0610031O16Rik	chr3	lncRNA	RIKEN cDNA 0610031O16 gene
known_NIR_11983	chr3	137943474;137945165	137944983;137945250	-	137943474	137945250	cassetteExon	ENSMUST00000199804.3	known	0.31	52.5	119	50;55	119	y	0.32	46.5	99	55;38	99	y	0.52	8.5	8	5;12	8	y	0.34	84.0	161	91;77	161	y	0.26	49.5	143	49;50	143	y	0.21	3.5	13	2;5	13	y	0.28	54.0	137	54;54	137	y	0.26	17.5	50	14;21	50	y	0.27	54.0	145	58;50	145	y	0.26	85.5	248	86;85	248	y	0.30	68.5	157	56;81	157	y	0.29	71.0	176	74;68	176	y	ENSMUSG00000012042.10	4930579F01Rik	chr3	protein_coding	RIKEN cDNA 4930579F01 gene
known_NIR_11984	chr3	137985512	137988197	+	137986273	137988197	A5SS&ES	ENSMUST00000162032.8	known	0.00	0	6017	0	6017	n	0.00	7	5124	7	5124	y	0.00	1	839	1	839	n	0.00	4	6197	4	6197	y	0.00	0	5888	0	5888	n	0.00	0	296	0	296	n	0.00	8	7634	8	7634	y	0.00	0	1355	0	1355	n	0.00	6	6472	6	6472	y	0.00	15	9303	15	9303	y	0.00	4	8082	4	8082	y	0.00	6	7857	6	7857	y	ENSMUSG00000074207.11	Adh1	chr3	protein_coding	alcohol dehydrogenase 1 (class I)
known_NIR_11985	chr3	138121310	138123850	+	138121310	138123886	A3SS	ENSMUST00000162260.2	known	0.00	0	252	0	252	n	0.00	0	243	0	243	n	0.00	0	30	0	30	n	0.00	0	469	0	469	n	0.00	1	411	1	411	n	0.00	0	30	0	30	n	0.01	4	433	4	433	y	0.00	0	80	0	80	n	0.00	0	329	0	329	n	0.01	3	487	3	487	y	0.01	2	357	2	357	y	0.00	0	380	0	380	n	ENSMUSG00000037797.15	Adh4	chr3	protein_coding	alcohol dehydrogenase 4 (class II), pi polypeptide
known_NIR_11986	chr3	138123987	138124951	+	138123987	138124469	3pMXE	ENSMUST00000162260.2	known	0.95	417	20	417	20	y	0.90	341	40	341	40	y	1.00	57	0	57	0	n	0.95	622	34	622	34	y	0.97	601	21	601	21	y	0.95	60	3	60	3	y	0.94	629	42	629	42	y	0.91	131	13	131	13	y	0.95	437	23	437	23	y	0.94	774	48	774	48	y	0.92	535	44	535	44	y	0.97	570	17	570	17	y	ENSMUSG00000037797.15	Adh4	chr3	protein_coding	alcohol dehydrogenase 4 (class II), pi polypeptide
known_NIR_11987	chr3	138149331	138151051	+	138148954	138151051	A5SS	ENSMUST00000005964.7	known	0.00	2	551	2	551	y	0.01	5	423	5	423	y	0.00	1	366	1	366	n	0.00	2	710	2	710	y	0.00	3	774	3	774	y	0.00	1	216	1	216	n	0.00	3	692	3	692	y	0.00	0	368	0	368	n	0.00	0	590	0	590	n	0.00	1	901	1	901	n	0.00	2	653	2	653	y	0.00	0	770	0	770	n	ENSMUSG00000028138.9	Adh5	chr3	protein_coding	alcohol dehydrogenase 5 (class III), chi polypeptide
known_NIR_11988	chr3	138151152	138153613	+	138151152;138152985	138152844;138153613	ES	ENSMUST00000005964.7	known	0.00	0	938.5	0	997;880	n	0.00	0	761.5	0	758;765	n	0.00	0	614.0	0	656;572	n	0.00	0	1102.0	0	1157;1047	n	0.00	0	1224.5	0	1254;1195	n	0.00	0	332.0	0	345;319	n	0.00	0	1082.0	0	1055;1109	n	0.00	0	509.5	0	560;459	n	0.00	0	1029.0	0	1070;988	n	0.00	0	1508.0	0	1591;1425	n	0.00	0	1091.5	0	1096;1087	n	0.00	2	1331.5	2	1369;1294	y	ENSMUSG00000028138.9	Adh5	chr3	protein_coding	alcohol dehydrogenase 5 (class III), chi polypeptide
known_NIR_11989	chr3	138168191	138174595	-	138168191;138172128	138171985;138174595	ES	ENSMUST00000029804.13	known	0.02	2	91.0	2	102;80	y	0.00	0	78.5	0	86;71	n	0.00	0	132.5	0	146;119	n	0.00	0	116.5	0	126;107	n	0.00	0	117.5	0	122;113	n	0.03	2	63.5	2	71;56	y	0.00	0	143.5	0	163;124	n	0.00	0	66.0	0	67;65	n	0.00	0	84.0	0	88;80	n	0.00	0	123.0	0	138;108	n	0.00	0	92.0	0	101;83	n	0.00	0	126.5	0	129;124	n	ENSMUSG00000005813.13	Metap1	chr3	protein_coding	methionyl aminopeptidase 1
known_NIR_11990	chr3	138168191	138174595	-	138172128	138174595	3pMXE	ENSMUST00000200365.5	known	0.02	2	80	2	80	y	0.00	0	71	0	71	n	0.00	0	119	0	119	n	0.00	0	107	0	107	n	0.00	0	113	0	113	n	0.03	2	56	2	56	y	0.00	0	124	0	124	n	0.00	0	65	0	65	n	0.00	0	80	0	80	n	0.00	0	108	0	108	n	0.00	0	83	0	83	n	0.00	0	124	0	124	n	ENSMUSG00000005813.13	Metap1	chr3	protein_coding	methionyl aminopeptidase 1
known_NIR_11991	chr3	138252188	138256024	+	138252188	138253420	A3SS&ES	ENSMUST00000200239.5	known	0.00	0	114	0	114	n	0.00	0	94	0	94	n	0.01	2	240	2	240	y	0.01	2	143	2	143	y	0.00	0	165	0	165	n	0.00	0	104	0	104	n	0.01	1	160	1	160	n	0.00	0	151	0	151	n	0.00	0	110	0	110	n	0.01	2	143	2	143	y	0.00	0	106	0	106	n	0.00	0	126	0	126	n	ENSMUSG00000028156.13	Eif4e	chr3	protein_coding	eukaryotic translation initiation factor 4E
known_NIR_11992	chr3	138252188	138256024	+	138252188;138253515	138253420;138256024	ES	ENSMUST00000029803.12	known	0.00	0	118.5	0	114;123	n	0.00	0	102.5	0	94;111	n	0.01	2	222.0	2	240;204	y	0.01	2	153.0	2	143;163	y	0.00	0	165.0	0	165;165	n	0.00	0	98.0	0	104;92	n	0.01	1	167.0	1	160;174	n	0.00	0	136.5	0	151;122	n	0.00	0	103.0	0	110;96	n	0.02	2	131.0	2	143;119	y	0.00	0	111.0	0	106;116	n	0.00	0	116.0	0	126;106	n	ENSMUSG00000028156.13	Eif4e	chr3	protein_coding	eukaryotic translation initiation factor 4E
known_NIR_11993	chr3	138661219	138661955	-	138661222	138661955	A3SS	ENSMUST00000098574.9	known	0.26	8	23	8	23	y	0.13	3	20	3	20	y	0.20	8	33	8	33	y	0.15	7	40	7	40	y	0.33	21	42	21	42	y	0.22	5	18	5	18	y	0.21	9	33	9	33	y	0.19	5	21	5	21	y	0.03	1	28	1	28	n	0.19	13	55	13	55	y	0.19	7	29	7	29	y	0.19	9	38	9	38	y	ENSMUSG00000028149.13	Rap1gds1	chr3	protein_coding	RAP1, GTP-GDP dissociation stimulator 1
known_NIR_11994	chr3	138671757	138721307	-	138671757;138689629	138689483;138721307	ES	ENSMUST00000098574.9	known	0.38	10	16.0	10	15;17	y	0.18	3	14.0	3	10;18	y	0.24	9	28.0	9	29;27	y	0.17	6	29.0	6	36;22	y	0.19	11	47.0	11	52;42	y	0.30	5	11.5	5	13;10	y	0.19	8	33.5	8	31;36	y	0.31	11	24.0	11	24;24	y	0.19	4	17.5	4	21;14	y	0.32	12	25.5	12	22;29	y	0.21	6	23.0	6	27;19	y	0.22	8	28.0	8	25;31	y	ENSMUSG00000028149.13	Rap1gds1	chr3	protein_coding	RAP1, GTP-GDP dissociation stimulator 1
known_NIR_11995	chr3	138721432	138727527	-	138721432	138727574	A5SS	ENSMUST00000098574.9	known	0.00	0	24	0	24	n	0.00	0	15	0	15	n	0.00	0	21	0	21	n	0.00	0	41	0	41	n	0.00	0	51	0	51	n	0.08	1	11	1	11	n	0.00	0	32	0	32	n	0.03	1	38	1	38	n	0.20	4	16	4	16	y	0.00	0	37	0	37	n	0.00	0	19	0	19	n	0.00	0	31	0	31	n	ENSMUSG00000028149.13	Rap1gds1	chr3	protein_coding	RAP1, GTP-GDP dissociation stimulator 1
known_NIR_11996	chr3	141983762	142009704	-	141988873	142009704	A3SS&ES	ENSMUST00000200650.5	known	1.00	28	0	28	0	n	1.00	13	0	13	0	n	0.95	40	2	40	2	y	0.98	46	1	46	1	n	1.00	54	0	54	0	n	1.00	13	0	13	0	n	0.97	31	1	31	1	n	1.00	35	0	35	0	n	0.96	26	1	26	1	n	0.98	51	1	51	1	n	0.93	37	3	37	3	y	0.94	29	2	29	2	y	ENSMUSG00000028273.16	Pdlim5	chr3	protein_coding	PDZ and LIM domain 5
known_NIR_11997	chr3	142009182	142009704	-	141983762	142009704	A3SS	ENSMUST00000029941.16	known	0.00	0	28	0	28	n	0.13	2	13	2	13	y	0.00	0	40	0	40	n	0.04	2	46	2	46	y	0.00	0	54	0	54	n	0.00	0	13	0	13	n	0.64	54	31	54	31	y	0.03	1	35	1	35	n	0.00	0	26	0	26	n	0.02	1	51	1	51	n	0.03	1	37	1	37	n	0.00	0	29	0	29	n	ENSMUSG00000028273.16	Pdlim5	chr3	protein_coding	PDZ and LIM domain 5
known_NIR_11998	chr3	142010230;142010483	142010466;142017884	-	142010230	142017884	cassetteExon	ENSMUST00000029941.16	known	0.06	2.0	31	2;2	31	y	0.00	0.0	28	0;0	28	n	0.00	0.0	19	0;0	19	n	0.00	0.0	37	0;0	37	n	0.00	0.0	53	0;0	53	n	0.00	0.0	16	0;0	16	n	0.46	32.0	37	64;0	37	n	0.00	0.0	28	0;0	28	n	0.00	0.0	36	0;0	36	n	0.02	1.0	60	0;2	60	n	0.00	0.0	35	0;0	35	n	0.00	0.0	32	0;0	32	n	ENSMUSG00000028273.16	Pdlim5	chr3	protein_coding	PDZ and LIM domain 5
known_NIR_11999	chr3	142010230;142017975	142017884;142020167	-	142010230;142015305	142010466;142020167	MXE	ENSMUST00000090134.12	known	0.95	18.0	1.0	31;5	2;0	n	1.00	15.0	0.0	28;2	0;0	n	1.00	11.5	0.0	19;4	0;0	n	1.00	20.0	0.0	37;3	0;0	n	1.00	27.5	0.0	53;2	0;0	n	1.00	8.0	0.0	16;0	0;0	n	0.23	19.5	64.5	37;2	64;65	y	1.00	14.0	0.0	28;0	0;0	n	1.00	19.0	0.0	36;2	0;0	n	1.00	30.5	0.0	60;1	0;0	n	1.00	18.0	0.0	35;1	0;0	n	1.00	16.0	0.0	32;0	0;0	n	ENSMUSG00000028273.16	Pdlim5	chr3	protein_coding	PDZ and LIM domain 5
known_NIR_12000	chr3	142010230;142018302	142017884;142020167	-	142010230;142015305	142010466;142020167	MXE	ENSMUST00000090134.12	known	0.96	25.5	1.0	31;20	2;0	n	1.00	18.5	0.0	28;9	0;0	n	1.00	20.0	0.0	19;21	0;0	n	1.00	32.0	0.0	37;27	0;0	n	1.00	52.0	0.0	53;51	0;0	n	1.00	23.5	0.0	16;31	0;0	n	0.37	37.5	64.5	37;38	64;65	y	1.00	28.5	0.0	28;29	0;0	n	1.00	29.0	0.0	36;22	0;0	n	1.00	55.0	0.0	60;50	0;0	n	1.00	34.5	0.0	35;34	0;0	n	1.00	41.5	0.0	32;51	0;0	n	ENSMUSG00000028273.16	Pdlim5	chr3	protein_coding	PDZ and LIM domain 5
known_NIR_12001	chr3	142015305	142020167	-	142017975	142020167	A3SS&ES	ENSMUST00000195975.5	known	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.97	65	2	65	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000028273.16	Pdlim5	chr3	protein_coding	PDZ and LIM domain 5
known_NIR_12002	chr3	142015305	142020167	-	142018302	142020167	A3SS&ES	ENSMUST00000029941.16	known	0.00	0	20	0	20	n	0.00	0	9	0	9	n	0.00	0	21	0	21	n	0.00	0	27	0	27	n	0.00	0	51	0	51	n	0.00	0	31	0	31	n	0.63	65	38	65	38	y	0.00	0	29	0	29	n	0.00	0	22	0	22	n	0.00	0	50	0	50	n	0.00	0	34	0	34	n	0.00	0	51	0	51	n	ENSMUSG00000028273.16	Pdlim5	chr3	protein_coding	PDZ and LIM domain 5
known_NIR_12003	chr3	142017975	142020167	-	142018302	142020167	A3SS	ENSMUST00000029941.16	known	0.20	5	20	5	20	y	0.18	2	9	2	9	y	0.16	4	21	4	21	y	0.10	3	27	3	27	y	0.04	2	51	2	51	y	0.00	0	31	0	31	n	0.05	2	38	2	38	y	0.00	0	29	0	29	n	0.08	2	22	2	22	y	0.02	1	50	1	50	n	0.03	1	34	1	34	n	0.00	0	51	0	51	n	ENSMUSG00000028273.16	Pdlim5	chr3	protein_coding	PDZ and LIM domain 5
known_NIR_12004	chr3	142097611	142101276	-	142097611	142101347	A5SS	ENSMUST00000029941.16	known	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	20	0	20	n	0.09	1	10	1	10	n	0.09	3	32	3	32	y	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.08	1	12	1	12	n	0.00	0	11	0	11	n	0.10	2	19	2	19	y	ENSMUSG00000028273.16	Pdlim5	chr3	protein_coding	PDZ and LIM domain 5
known_NIR_12005	chr3	142266044	142267501	+	142266044;142266451	142266257;142267501	ES	ENSMUST00000199325.5	known	0.00	0	3.0	0	0;6	n	0.00	0	0.5	0	0;1	n	0.46	3	3.5	3	2;5	y	0.00	0	1.0	0	0;2	n	0.00	0	3.0	0	2;4	n	0.00	0	0.5	0	1;0	n	0.57	2	1.5	2	0;3	n	0.00	0	0.5	0	1;0	n	0.00	0	1.0	0	0;2	n	0.57	2	1.5	2	1;2	n	0.00	0	5.0	0	7;3	n	0.57	2	1.5	2	3;0	n	ENSMUSG00000028268.15	Gbp3	chr3	protein_coding	guanylate binding protein 3
known_NIR_12006	chr3	142406936	142424137	+	142406936;142412552	142412450;142424137	ES	ENSMUST00000106218.8	known	0.00	0	4.5	0	6;3	n	0.00	0	9.0	0	10;8	n	0.00	0	0.5	0	1;0	n	0.00	0	2.0	0	3;1	n	0.00	0	5.5	0	5;6	n	-	-	-	-	-	-	0.00	0	8.5	0	7;10	n	-	-	-	-	-	-	0.00	0	2.5	0	4;1	n	0.00	0	12.5	0	17;8	n	0.00	0	6.0	0	4;8	n	0.09	2	19.5	2	19;20	y	ENSMUSG00000040213.14	Kyat3	chr3	protein_coding	kynurenine aminotransferase 3
known_NIR_12007	chr3	142412556	142424137	+	142412552	142424137	A5SS	ENSMUST00000106218.8	known	0.00	0	3	0	3	n	0.11	1	8	1	8	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.33	3	6	3	6	n	-	-	-	-	-	-	0.09	1	10	1	10	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.20	2	8	2	8	y	0.20	2	8	2	8	y	0.00	0	20	0	20	n	ENSMUSG00000040213.14	Kyat3	chr3	protein_coding	kynurenine aminotransferase 3
known_NIR_12008	chr3	142426266;142426500	142426359;142428876	+	142426266	142428876	cassetteExon	ENSMUST00000106218.8	known	0.00	1.5	353	2;1	353	n	0.00	1.0	245	2;0	245	n	0.00	1.5	549	2;1	549	n	0.00	2.0	557	2;2	557	y	0.00	0.5	610	1;0	610	n	0.00	0.5	240	0;1	240	n	0.00	1.5	443	2;1	443	n	0.00	0.0	290	0;0	290	n	0.00	1.0	417	2;0	417	n	0.00	1.0	469	0;2	469	n	0.00	0.5	553	1;0	553	n	0.00	1.5	540	2;1	540	n	ENSMUSG00000040213.14	Kyat3	chr3	protein_coding	kynurenine aminotransferase 3
known_NIR_12009	chr3	142435596;142436469	142436387;142436963	+	142435596	142436963	cassetteExon	ENSMUST00000106218.8	known	0.01	6.5	443	8;5	443	y	0.02	5.5	328	4;7	328	y	0.00	2.0	501	4;0	501	n	0.01	5.0	526	7;3	526	y	0.01	8.5	595	7;10	595	y	0.01	1.5	270	1;2	270	n	0.01	3.5	582	3;4	582	y	0.02	6.0	318	3;9	318	y	0.02	9.0	530	9;9	530	y	0.01	6.0	548	8;4	548	y	0.02	12.5	665	9;16	665	y	0.01	6.5	590	7;6	590	y	ENSMUSG00000040213.14	Kyat3	chr3	protein_coding	kynurenine aminotransferase 3
known_NIR_12010	chr3	142444386	142449832	+	142444072	142449832	A5SS	ENSMUST00000106218.8	known	0.01	7	528	7	528	y	0.01	4	464	4	464	y	0.00	1	513	1	513	n	0.01	3	580	3	580	y	0.02	11	650	11	650	y	0.00	0	263	0	263	n	0.00	2	600	2	600	y	0.00	0	338	0	338	n	0.02	10	535	10	535	y	0.01	5	579	5	579	y	0.00	2	771	2	771	y	0.01	7	563	7	563	y	ENSMUSG00000040213.14	Kyat3	chr3	protein_coding	kynurenine aminotransferase 3
known_NIR_12011	chr3	142510628	142515234	-	142509491	142515234	A3SS	ENSMUST00000043812.15	known	0.03	1	38	1	38	n	0.00	0	36	0	36	n	0.00	0	91	0	91	n	0.00	0	65	0	65	n	0.00	0	63	0	63	n	0.00	0	28	0	28	n	0.01	1	66	1	66	n	0.00	0	27	0	27	n	0.00	0	38	0	38	n	0.00	0	58	0	58	n	0.06	2	31	2	31	y	0.00	0	69	0	69	n	ENSMUSG00000004591.17	Pkn2	chr3	protein_coding	protein kinase N2
known_NIR_12012	chr3	142516195	142516452	-	142516248	142516452	A3SS	ENSMUST00000043812.15	known	0.00	0	11	0	11	n	0.00	0	18	0	18	n	0.00	0	58	0	58	n	0.00	0	31	0	31	n	0.00	0	51	0	51	n	0.00	0	10	0	10	n	0.09	4	39	4	39	y	0.00	0	45	0	45	n	0.08	3	33	3	33	y	0.02	1	49	1	49	n	0.00	0	18	0	18	n	0.00	0	57	0	57	n	ENSMUSG00000004591.17	Pkn2	chr3	protein_coding	protein kinase N2
known_NIR_12013	chr3	143907812	143910581	-	143907812	143908009	5pMXE	ENSMUST00000121796.8	known	0.96	25	1	25	1	n	0.72	13	5	13	5	y	0.96	53	2	53	2	y	0.81	13	3	13	3	y	1.00	11	0	11	0	n	1.00	23	0	23	0	n	0.94	34	2	34	2	y	1.00	18	0	18	0	n	1.00	10	0	10	0	n	0.94	31	2	31	2	y	0.91	20	2	20	2	y	1.00	28	0	28	0	n	ENSMUSG00000028266.18	Lmo4	chr3	protein_coding	LIM domain only 4
known_NIR_12014	chr3	144296436	144302584	+	144296436	144300662	3pMXE	ENSMUST00000151086.3	known	0.00	0	1036	0	1036	n	0.00	0	957	0	957	n	0.00	2	1598	2	1598	y	0.00	0	1026	0	1026	n	0.00	3	1598	3	1598	y	0.00	0	958	0	958	n	0.00	0	1401	0	1401	n	0.00	1	1011	1	1011	n	0.00	0	847	0	847	n	0.00	4	1333	4	1333	y	0.00	0	1073	0	1073	n	0.00	0	1071	0	1071	n	ENSMUSG00000037072.17	Selenof	chr3	protein_coding	selenoprotein F
known_NIR_12015	chr3	144296436	144302584	+	144296436;144300711	144300662;144302584	ES	ENSMUST00000144859.4	known	0.00	0	1025.0	0	1036;1014	n	0.00	0	963.5	0	957;970	n	0.00	2	1608.0	2	1598;1618	y	0.00	0	1018.0	0	1026;1010	n	0.00	3	1616.5	3	1598;1635	y	0.00	0	951.5	0	958;945	n	0.00	0	1432.5	0	1401;1464	n	0.00	1	1002.0	1	1011;993	n	0.00	0	854.5	0	847;862	n	0.00	4	1323.5	4	1333;1314	y	0.00	0	1058.0	0	1073;1043	n	0.00	0	1073.0	0	1071;1075	n	ENSMUSG00000037072.17	Selenof	chr3	protein_coding	selenoprotein F
known_NIR_12016	chr3	144390900	144397661	-	144390900;144397293	144397219;144397661	ES	ENSMUST00000199531.5	known	0.05	5	95.5	5	23;168	y	0.07	7	99.0	7	34;164	y	0.04	9	198.5	9	53;344	y	0.08	8	95.0	8	18;172	y	0.07	9	125.5	9	33;218	y	0.05	5	89.0	5	15;163	y	0.08	16	178.0	16	50;306	y	0.04	3	82.0	3	14;150	y	0.08	8	95.5	8	25;166	y	0.08	11	123.0	11	19;227	y	0.05	6	114.0	6	23;205	y	0.06	8	133.5	8	29;238	y	ENSMUSG00000037062.14	Sh3glb1	chr3	protein_coding	SH3-domain GRB2-like B1 (endophilin)
known_NIR_12017	chr3	144390900	144397661	-	144397293	144397661	3pMXE	ENSMUST00000198254.5	known	0.03	5	168	5	168	y	0.04	7	164	7	164	y	0.03	9	344	9	344	y	0.04	8	172	8	172	y	0.04	9	218	9	218	y	0.03	5	163	5	163	y	0.05	16	306	16	306	y	0.02	3	150	3	150	y	0.05	8	166	8	166	y	0.05	11	227	11	227	y	0.03	6	205	6	205	y	0.03	8	238	8	238	y	ENSMUSG00000037062.14	Sh3glb1	chr3	protein_coding	SH3-domain GRB2-like B1 (endophilin)
known_NIR_12018	chr3	144453355;144454262	144454162;144455426	-	144453355	144455426	cassetteExon	ENSMUST00000029932.14	known	0.82	4.5	1	2;7	1	n	0.85	11.5	2	12;11	2	y	0.37	3.5	6	4;3	6	y	0.56	9.0	7	9;9	7	y	0.44	7.0	9	12;2	9	y	0.65	5.5	3	8;3	3	y	0.77	10.0	3	11;9	3	y	0.82	4.5	1	4;5	1	n	0.40	4.0	6	3;5	6	y	0.56	2.5	2	2;3	2	n	0.82	4.5	1	2;7	1	n	0.87	6.5	1	6;7	1	n	ENSMUSG00000056025.13	Clca3a1	chr3	protein_coding	chloride channel accessory 3A1
known_NIR_12019	chr3	144825119	144829972	+	144824543	144829972	A5SS	ENSMUST00000098538.9	known	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	5	5	5	5	y	0.50	1	1	1	1	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.80	4	1	4	1	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	-	-	-	-	-	-	ENSMUSG00000028256.17	Odf2l	chr3	protein_coding	outer dense fiber of sperm tails 2-like
known_NIR_12020	chr3	144831986	144833592	+	144831986;144832912	144832784;144833592	ES	ENSMUST00000098538.9	known	0.00	0	11.5	0	15;8	n	0.00	0	9.5	0	7;12	n	0.25	3	9.0	3	7;11	y	0.22	4	14.0	4	10;18	y	0.00	0	17.5	0	17;18	n	0.29	2	5.0	2	3;7	y	0.12	2	14.0	2	13;15	y	0.00	0	15.5	0	15;16	n	0.00	0	14.0	0	15;13	n	0.11	2	17.0	2	17;17	y	0.00	0	9.0	0	10;8	n	0.17	2	9.5	2	3;16	y	ENSMUSG00000028256.17	Odf2l	chr3	protein_coding	outer dense fiber of sperm tails 2-like
known_NIR_12021	chr3	144842484	144850073	+	144842484;144845655	144845545;144850073	ES	ENSMUST00000098538.9	known	0.00	0	13.0	0	12;14	n	0.00	0	11.5	0	9;14	n	0.00	0	19.0	0	15;23	n	0.06	1	16.0	1	16;16	n	0.00	0	27.0	0	33;21	n	0.00	0	8.0	0	12;4	n	0.06	1	17.0	1	19;15	n	0.05	1	17.5	1	18;17	n	0.00	0	13.5	0	16;11	n	0.04	1	27.0	1	23;31	n	0.00	0	15.5	0	18;13	n	0.09	2	20.0	2	16;24	y	ENSMUSG00000028256.17	Odf2l	chr3	protein_coding	outer dense fiber of sperm tails 2-like
known_NIR_12022	chr3	144842484	144850073	+	144845655	144850073	5pMXE	ENSMUST00000196426.5	known	0.00	0	14	0	14	n	0.00	0	14	0	14	n	0.00	0	23	0	23	n	0.06	1	16	1	16	n	0.00	0	21	0	21	n	0.00	0	4	0	4	n	0.06	1	15	1	15	n	0.06	1	17	1	17	n	0.00	0	11	0	11	n	0.03	1	31	1	31	n	0.00	0	13	0	13	n	0.08	2	24	2	24	y	ENSMUSG00000028256.17	Odf2l	chr3	protein_coding	outer dense fiber of sperm tails 2-like
known_NIR_12023	chr3	145282039	145282606	+	145282048	145282606	A5SS	ENSMUST00000199033.5	known	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.14	1	6	1	6	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.20	3	12	3	12	y	0.25	3	9	3	9	y	0.17	1	5	1	5	n	ENSMUSG00000074182.9	Znhit6	chr3	protein_coding	zinc finger, HIT type 6
known_NIR_12024	chr3	145466530	145551460	+	145464919	145551460	A5SS	ENSMUST00000029845.15	known	0.00	0	80	0	80	n	0.02	1	60	1	60	n	0.00	0	11	0	11	n	0.00	0	71	0	71	n	0.00	0	99	0	99	n	0.00	0	12	0	12	n	0.00	0	113	0	113	n	0.03	1	36	1	36	n	0.01	1	82	1	82	n	0.01	2	167	2	167	y	0.01	1	122	1	122	n	0.01	1	147	1	147	n	ENSMUSG00000028194.16	Ddah1	chr3	protein_coding	dimethylarginine dimethylaminohydrolase 1
known_NIR_12025	chr3	145644083	145644653	+	145644083	145644298	3pMXE	ENSMUST00000189656.2	known	0.78	18	5	18	5	y	0.45	9	11	9	11	y	0.54	7	6	7	6	y	0.97	28	1	28	1	n	0.76	13	4	13	4	y	0.82	9	2	9	2	y	0.79	15	4	15	4	y	0.56	9	7	9	7	y	0.55	6	5	6	5	y	0.82	28	6	28	6	y	0.68	15	7	15	7	y	0.65	13	7	13	7	y	ENSMUSG00000036873.14	2410004B18Rik	chr3	protein_coding	RIKEN cDNA 2410004B18 gene
known_NIR_12026	chr3	145644083;145644424	145644298;145644653	+	145644083	145644653	cassetteExon	ENSMUST00000039571.14	known	0.25	6.0	18	5;7	18	y	0.44	7.0	9	11;3	9	y	0.33	3.5	7	6;1	7	n	0.07	2.0	28	1;3	28	n	0.21	3.5	13	4;3	13	y	0.22	2.5	9	2;3	9	y	0.23	4.5	15	4;5	15	y	0.33	4.5	9	7;2	9	y	0.40	4.0	6	5;3	6	y	0.16	5.5	28	6;5	28	y	0.29	6.0	15	7;5	15	y	0.30	5.5	13	7;4	13	y	ENSMUSG00000036873.14	2410004B18Rik	chr3	protein_coding	RIKEN cDNA 2410004B18 gene
known_NIR_12027	chr3	145644851	145646950	+	145644851	145649552	A3SS	ENSMUST00000039571.14	known	0.00	0	34	0	34	n	0.06	3	45	3	45	y	0.00	0	36	0	36	n	0.00	0	28	0	28	n	0.00	0	35	0	35	n	0.11	2	17	2	17	y	0.00	0	48	0	48	n	0.00	0	11	0	11	n	0.00	0	30	0	30	n	0.00	0	45	0	45	n	0.08	2	22	2	22	y	0.03	1	28	1	28	n	ENSMUSG00000036873.14	2410004B18Rik	chr3	protein_coding	RIKEN cDNA 2410004B18 gene
known_NIR_12028	chr3	145644851	145649517	+	145644851	145649552	A3SS	ENSMUST00000039571.14	known	0.31	15	34	15	34	y	0.12	6	45	6	45	y	0.22	10	36	10	36	y	0.22	8	28	8	28	y	0.19	8	35	8	35	y	0.11	2	17	2	17	y	0.17	10	48	10	48	y	0.45	9	11	9	11	y	0.03	1	30	1	30	n	0.22	13	45	13	45	y	0.19	5	22	5	22	y	0.07	2	28	2	28	y	ENSMUSG00000036873.14	2410004B18Rik	chr3	protein_coding	RIKEN cDNA 2410004B18 gene
known_NIR_12029	chr3	145694924	145704218	+	145694924	145704221	A3SS	ENSMUST00000039517.11	known	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.22	2	7	2	7	n	0.09	1	10	1	10	n	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.75	6	2	6	2	n	0.00	0	4	0	4	n	0.45	5	6	5	6	y	0.67	2	1	2	1	n	-	-	-	-	-	-	ENSMUSG00000036863.13	Syde2	chr3	protein_coding	synapse defective 1, Rho GTPase, homolog 2 (C. elegans)
known_NIR_12030	chr3	146110539	146123362	+	146110690	146123362	A5SS	ENSMUST00000106151.8	known	0.33	2	4	2	4	n	0.00	0	4	0	4	n	0.48	11	12	11	12	y	0.40	4	6	4	6	y	0.50	4	4	4	4	n	0.33	3	6	3	6	n	0.15	2	11	2	11	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.40	2	3	2	3	n	0.50	4	4	4	4	n	0.70	7	3	7	3	y	ENSMUSG00000036825.13	Ssx2ip	chr3	protein_coding	synovial sarcoma, X 2 interacting protein
known_NIR_12031	chr3	146138372	146138728	+	146138372	146138731	A3SS	ENSMUST00000106151.8	known	0.83	15	3	15	3	y	0.79	15	4	15	4	y	0.69	46	21	46	21	y	0.74	20	7	20	7	y	0.71	29	12	29	12	y	0.46	6	7	6	7	y	0.67	16	8	16	8	y	0.62	15	9	15	9	y	0.79	11	3	11	3	y	0.66	25	13	25	13	y	0.56	10	8	10	8	y	0.53	9	8	9	8	y	ENSMUSG00000036825.13	Ssx2ip	chr3	protein_coding	synovial sarcoma, X 2 interacting protein
known_NIR_12032	chr3	146156385	146159918	+	146156385	146160102	A3SS	ENSMUST00000061937.13	known	0.00	0	30	0	30	n	0.00	0	30	0	30	n	0.00	0	50	0	50	n	0.04	2	50	2	50	y	0.00	0	66	0	66	n	0.00	0	32	0	32	n	0.00	0	52	0	52	n	0.03	1	32	1	32	n	0.05	2	41	2	41	y	0.02	1	56	1	56	n	0.03	1	35	1	35	n	0.04	2	53	2	53	y	ENSMUSG00000028189.13	Ctbs	chr3	protein_coding	chitobiase
known_NIR_12033	chr3	146164595	146169654	+	146164595;146165595	146165434;146169654	ES	ENSMUST00000061937.13	known	0.08	5	54.5	5	60;49	y	0.15	8	45.5	8	37;54	y	0.06	3	46.5	3	51;42	y	0.07	4	50.0	4	51;49	y	0.05	4	79.0	4	85;73	y	0.05	2	40.0	2	34;46	y	0.09	6	64.5	6	62;67	y	0.00	0	41.5	0	34;49	n	0.04	2	48.0	2	51;45	y	0.04	3	79.0	3	73;85	y	0.03	1	39.0	1	44;34	n	0.11	7	59.5	7	57;62	y	ENSMUSG00000028189.13	Ctbs	chr3	protein_coding	chitobiase
known_NIR_12034	chr3	146206101	146209015	+	146205775	146209015	A5SS	ENSMUST00000090031.12	known	0.00	4	921	4	921	y	0.00	0	967	0	967	n	0.00	1	975	1	975	n	0.00	1	845	1	845	n	0.00	1	1059	1	1059	n	0.00	0	609	0	609	n	0.00	0	1082	0	1082	n	0.00	0	568	0	568	n	0.00	2	657	2	657	y	0.00	0	1070	0	1070	n	0.00	1	883	1	883	n	0.00	3	995	3	995	y	ENSMUSG00000068523.13	Gng5	chr3	protein_coding	guanine nucleotide binding protein (G protein), gamma 5
known_NIR_12035	chr3	146225198	146226440	-	146225198	146226924	A5SS	ENSMUST00000029838.11	known	0.00	0	52	0	52	n	0.10	4	38	4	38	y	0.01	1	67	1	67	n	0.01	1	76	1	76	n	0.05	4	72	4	72	y	0.00	0	28	0	28	n	0.04	2	51	2	51	y	0.00	0	27	0	27	n	0.00	0	42	0	42	n	0.01	1	67	1	67	n	0.04	2	55	2	55	y	0.04	2	55	2	55	y	ENSMUSG00000028187.11	Rpf1	chr3	protein_coding	ribosome production factor 1 homolog
known_NIR_12036	chr3	146302988	146315734	+	146302988	146316025	A3SS	ENSMUST00000029837.14	known	0.01	20	2870	20	2870	y	0.00	12	2445	12	2445	y	0.02	36	2162	36	2162	y	0.01	42	4300	42	4300	y	0.01	41	2941	41	2941	y	0.02	15	596	15	596	y	0.01	30	3258	30	3258	y	0.01	15	1578	15	1578	y	0.01	44	3285	44	3285	y	0.01	58	5692	58	5692	y	0.01	40	3328	40	3328	y	0.01	87	7178	87	7178	y	ENSMUSG00000028186.15	Uox	chr3	protein_coding	urate oxidase
known_NIR_12037	chr3	146302988	146315734	+	146302988	146318038	A3SS	ENSMUST00000121133.2	known	0.53	20	18	20	18	y	0.41	12	17	12	17	y	0.73	36	13	36	13	y	0.53	42	38	42	38	y	0.57	41	31	41	31	y	0.52	15	14	15	14	y	0.43	30	39	30	39	y	0.48	15	16	15	16	y	0.67	44	22	44	22	y	0.59	58	40	58	40	y	0.62	40	25	40	25	y	0.62	87	53	87	53	y	ENSMUSG00000028186.15	Uox	chr3	protein_coding	urate oxidase
known_NIR_12038	chr3	146302988	146316025	+	146276318	146316025	A5SS	ENSMUST00000199489.5	known	1.00	2870	0	2870	0	n	1.00	2445	2	2445	2	y	1.00	2162	0	2162	0	n	1.00	4300	2	4300	2	y	1.00	2941	0	2941	0	n	1.00	596	0	596	0	n	1.00	3258	0	3258	0	n	1.00	1578	1	1578	1	n	1.00	3285	0	3285	0	n	1.00	5692	2	5692	2	y	1.00	3328	2	3328	2	y	1.00	7178	0	7178	0	n	ENSMUSG00000028186.15	Uox	chr3	protein_coding	urate oxidase
known_NIR_12039	chr3	146302988	146318038	+	146302988;146316243	146315734;146318038	ES	ENSMUST00000147409.2	known	0.01	18	1675.5	18	20;3331	y	0.01	17	1319.0	17	12;2626	y	0.01	13	1196.5	13	36;2357	y	0.02	38	2179.5	38	42;4317	y	0.02	31	1684.0	31	41;3327	y	0.03	14	400.5	14	15;786	y	0.02	39	1676.5	39	30;3323	y	0.02	16	832.0	16	15;1649	y	0.01	22	1713.5	22	44;3383	y	0.01	40	3181.0	40	58;6304	y	0.01	25	1926.0	25	40;3812	y	0.01	53	3898.0	53	87;7709	y	ENSMUSG00000028186.15	Uox	chr3	protein_coding	urate oxidase
known_NIR_12040	chr3	146302988	146318038	+	146302988;146316243	146316025;146318038	ES	ENSMUST00000029837.14	known	0.01	18	3100.5	18	2870;3331	y	0.01	17	2535.5	17	2445;2626	y	0.01	13	2259.5	13	2162;2357	y	0.01	38	4308.5	38	4300;4317	y	0.01	31	3134.0	31	2941;3327	y	0.02	14	691.0	14	596;786	y	0.01	39	3290.5	39	3258;3323	y	0.01	16	1613.5	16	1578;1649	y	0.01	22	3334.0	22	3285;3383	y	0.01	40	5998.0	40	5692;6304	y	0.01	25	3570.0	25	3328;3812	y	0.01	53	7443.5	53	7178;7709	y	ENSMUSG00000028186.15	Uox	chr3	protein_coding	urate oxidase
known_NIR_12041	chr3	146302988	146318038	+	146316243	146318038	A5SS&ES	ENSMUST00000199489.5	known	0.01	18	3331	18	3331	y	0.01	17	2626	17	2626	y	0.01	13	2357	13	2357	y	0.01	38	4317	38	4317	y	0.01	31	3327	31	3327	y	0.02	14	786	14	786	y	0.01	39	3323	39	3323	y	0.01	16	1649	16	1649	y	0.01	22	3383	22	3383	y	0.01	40	6304	40	6304	y	0.01	25	3812	25	3812	y	0.01	53	7709	53	7709	y	ENSMUSG00000028186.15	Uox	chr3	protein_coding	urate oxidase
known_NIR_12042	chr3	146331633	146333560	+	146331633	146333556	A3SS	ENSMUST00000029837.14	known	0.03	137	3957	137	3957	y	0.03	111	3655	111	3655	y	0.03	79	2468	79	2468	y	0.03	149	4813	149	4813	y	0.03	109	3617	109	3617	y	0.03	30	842	30	842	y	0.04	153	4136	153	4136	y	0.04	74	1701	74	1701	y	0.04	150	4010	150	4010	y	0.04	271	7363	271	7363	y	0.03	164	4595	164	4595	y	0.03	267	8917	267	8917	y	ENSMUSG00000028186.15	Uox	chr3	protein_coding	urate oxidase
known_NIR_12043	chr3	146463523	146486902	-	146463523	146518393	A5SS	ENSMUST00000102515.10	known	0.00	0	24	0	24	n	0.00	0	19	0	19	n	0.00	0	29	0	29	n	0.02	1	40	1	40	n	0.02	1	54	1	54	n	0.00	0	23	0	23	n	0.00	0	39	0	39	n	0.00	0	30	0	30	n	0.00	0	38	0	38	n	0.04	2	53	2	53	y	0.00	0	25	0	25	n	0.03	1	33	1	33	n	ENSMUSG00000005034.16	Prkacb	chr3	protein_coding	protein kinase, cAMP dependent, catalytic, beta
known_NIR_12044	chr3	14671468	14674601	-	14671468;14672353	14672237;14674601	ES	ENSMUST00000185384.7	known	0.00	0	286.5	0	250;323	n	0.00	1	305.0	1	312;298	n	0.00	1	362.0	1	295;429	n	0.00	0	231.0	0	200;262	n	0.00	0	356.0	0	282;430	n	0.00	0	204.0	0	191;217	n	0.00	0	333.5	0	275;392	n	0.00	0	172.0	0	133;211	n	0.00	0	234.5	0	214;255	n	0.01	2	339.0	2	317;361	y	0.00	0	287.0	0	246;328	n	0.00	0	275.0	0	227;323	n	ENSMUSG00000078784.9	Rbis	chr3	protein_coding	ribosomal biogenesis factor
known_NIR_12045	chr3	14671468	14674601	-	14672353	14674601	A3SS	ENSMUST00000186870.7	known	0.00	0	323	0	323	n	0.00	1	298	1	298	n	0.00	1	429	1	429	n	0.00	0	262	0	262	n	0.00	0	430	0	430	n	0.00	0	217	0	217	n	0.00	0	392	0	392	n	0.00	0	211	0	211	n	0.00	0	255	0	255	n	0.01	2	361	2	361	y	0.00	0	328	0	328	n	0.00	0	323	0	323	n	ENSMUSG00000078784.9	Rbis	chr3	protein_coding	ribosomal biogenesis factor
known_NIR_12046	chr3	14674717	14676077	-	14674717	14676270	A5SS	ENSMUST00000185384.7	known	0.07	11	146	11	146	y	0.09	16	164	16	164	y	0.02	5	253	5	253	y	0.09	15	160	15	160	y	0.08	18	214	18	214	y	0.03	4	130	4	130	y	0.03	6	191	6	191	y	0.05	6	111	6	111	y	0.02	3	161	3	161	y	0.05	10	183	10	183	y	0.07	12	159	12	159	y	0.04	8	181	8	181	y	ENSMUSG00000078784.9	Rbis	chr3	protein_coding	ribosomal biogenesis factor
known_NIR_12047	chr3	148523564	148528591	-	148523564;148526661	148526609;148528591	ES	ENSMUST00000200216.5	known	0.92	52	4.5	52	5;4	y	0.86	37	6.0	37	9;3	y	0.82	51	11.0	51	13;9	y	0.82	45	10.0	45	15;5	y	0.79	53	14.0	53	18;10	y	0.92	23	2.0	23	3;1	n	0.87	48	7.0	48	10;4	y	0.78	30	8.5	30	11;6	y	0.87	55	8.0	55	12;4	y	0.90	47	5.0	47	4;6	y	0.85	60	11.0	60	17;5	y	0.89	55	7.0	55	10;4	y	ENSMUSG00000028184.13	Adgrl2	chr3	protein_coding	adhesion G protein-coupled receptor L2
known_NIR_12048	chr3	148523564	148528624	-	148523564	148526609	A5SS&ES	ENSMUST00000200216.5	known	0.29	2	5	2	5	n	0.00	0	9	0	9	n	0.13	2	13	2	13	y	0.06	1	15	1	15	n	0.25	6	18	6	18	y	0.25	1	3	1	3	n	0.29	4	10	4	10	y	0.08	1	11	1	11	n	0.14	2	12	2	12	y	0.20	1	4	1	4	n	0.11	2	17	2	17	y	0.29	4	10	4	10	y	ENSMUSG00000028184.13	Adgrl2	chr3	protein_coding	adhesion G protein-coupled receptor L2
known_NIR_12049	chr3	148523564	148528624	-	148523564	148528591	A5SS	ENSMUST00000200543.5	known	0.04	2	52	2	52	y	0.00	0	37	0	37	n	0.04	2	51	2	51	y	0.02	1	45	1	45	n	0.10	6	53	6	53	y	0.04	1	23	1	23	n	0.08	4	48	4	48	y	0.03	1	30	1	30	n	0.04	2	55	2	55	y	0.02	1	47	1	47	n	0.03	2	60	2	60	y	0.07	4	55	4	55	y	ENSMUSG00000028184.13	Adgrl2	chr3	protein_coding	adhesion G protein-coupled receptor L2
known_NIR_12050	chr3	148523564;148526690	148526609;148528591	-	148523564	148528591	cassetteExon	ENSMUST00000200543.5	known	0.06	3.5	52	5;2	52	y	0.13	5.5	37	9;2	37	y	0.14	8.0	51	13;3	51	y	0.16	8.5	45	15;2	45	y	0.20	13.5	53	18;9	53	y	0.08	2.0	23	3;1	23	n	0.11	6.0	48	10;2	48	y	0.19	7.0	30	11;3	30	y	0.12	7.5	55	12;3	55	y	0.10	5.0	47	4;6	47	y	0.16	11.5	60	17;6	60	y	0.10	6.0	55	10;2	55	y	ENSMUSG00000028184.13	Adgrl2	chr3	protein_coding	adhesion G protein-coupled receptor L2
known_NIR_12051	chr3	148523564;148527044	148526609;148528591	-	148523564	148528591	cassetteExon	ENSMUST00000200543.5	known	0.05	2.5	52	5;0	52	n	0.11	4.5	37	9;0	37	n	0.11	6.5	51	13;0	51	n	0.14	7.5	45	15;0	45	n	0.16	10.0	53	18;2	53	y	0.06	1.5	23	3;0	23	n	0.09	5.0	48	10;0	48	n	0.15	5.5	30	11;0	30	n	0.11	7.0	55	12;2	55	y	0.04	2.0	47	4;0	47	n	0.12	8.5	60	17;0	60	n	0.08	5.0	55	10;0	55	n	ENSMUSG00000028184.13	Adgrl2	chr3	protein_coding	adhesion G protein-coupled receptor L2
known_NIR_12052	chr3	148526690	148528591	-	148526661	148528591	A3SS	ENSMUST00000200216.5	known	0.33	2	4	2	4	n	0.40	2	3	2	3	n	0.25	3	9	3	9	y	0.29	2	5	2	5	n	0.47	9	10	9	10	y	0.50	1	1	1	1	n	0.33	2	4	2	4	n	0.33	3	6	3	6	n	0.43	3	4	3	4	n	0.50	6	6	6	6	y	0.55	6	5	6	5	y	0.33	2	4	2	4	n	ENSMUSG00000028184.13	Adgrl2	chr3	protein_coding	adhesion G protein-coupled receptor L2
known_NIR_12053	chr3	148532169	148534113	-	148532169;148533221	148533177;148534113	ES	ENSMUST00000198139.5	known	1.00	29	0.0	29	0;0	n	0.95	39	2.0	39	2;2	y	0.98	62	1.0	62	1;1	n	1.00	24	0.0	24	0;0	n	1.00	61	0.0	61	0;0	n	1.00	24	0.0	24	0;0	n	1.00	54	0.0	54	0;0	n	1.00	37	0.0	37	0;0	n	1.00	33	0.0	33	0;0	n	1.00	59	0.0	59	0;0	n	1.00	41	0.0	41	0;0	n	1.00	57	0.0	57	0;0	n	ENSMUSG00000028184.13	Adgrl2	chr3	protein_coding	adhesion G protein-coupled receptor L2
known_NIR_12054	chr3	148532169	148534113	-	148533221	148534113	3pMXE	ENSMUST00000197521.2	known	1.00	29	0	29	0	n	0.95	39	2	39	2	y	0.98	62	1	62	1	n	1.00	24	0	24	0	n	1.00	61	0	61	0	n	1.00	24	0	24	0	n	1.00	54	0	54	0	n	1.00	37	0	37	0	n	1.00	33	0	33	0	n	1.00	59	0	59	0	n	1.00	41	0	41	0	n	1.00	57	0	57	0	n	ENSMUSG00000028184.13	Adgrl2	chr3	protein_coding	adhesion G protein-coupled receptor L2
known_NIR_12055	chr3	148552668	148556472	-	148552668;148555440	148555402;148556472	ES	ENSMUST00000106128.7	known	0.68	25	12.0	25	12;12	y	0.55	8	6.5	8	5;8	y	0.69	47	21.0	47	21;21	y	0.67	31	15.5	31	14;17	y	0.79	58	15.0	58	14;16	y	0.75	22	7.5	22	9;6	y	0.69	49	22.0	49	22;22	y	0.72	42	16.5	42	11;22	y	0.63	25	14.5	25	15;14	y	0.81	39	9.0	39	7;11	y	0.72	34	13.5	34	12;15	y	0.64	35	19.5	35	15;24	y	ENSMUSG00000028184.13	Adgrl2	chr3	protein_coding	adhesion G protein-coupled receptor L2
known_NIR_12056	chr3	148558298	148564369	-	148558496	148564369	A3SS	ENSMUST00000106128.7	known	0.04	1	26	1	26	n	0.06	1	17	1	17	n	0.00	0	47	0	47	n	0.00	0	30	0	30	n	0.00	0	61	0	61	n	0.00	0	31	0	31	n	0.13	5	33	5	33	y	0.11	4	31	4	31	y	0.00	0	34	0	34	n	0.00	0	37	0	37	n	0.03	1	29	1	29	n	0.05	2	39	2	39	y	ENSMUSG00000028184.13	Adgrl2	chr3	protein_coding	adhesion G protein-coupled receptor L2
known_NIR_12057	chr3	148660371	148694226	-	148660371	148696076	A5SS	ENSMUST00000196526.5	known	0.50	6	6	6	6	y	0.40	4	6	4	6	y	0.75	9	3	9	3	y	0.50	4	4	4	4	n	0.86	12	2	12	2	y	1.00	7	0	7	0	n	0.70	7	3	7	3	y	0.78	7	2	7	2	n	0.27	3	8	3	8	y	0.81	17	4	17	4	y	0.80	4	1	4	1	n	0.54	7	6	7	6	y	ENSMUSG00000028184.13	Adgrl2	chr3	protein_coding	adhesion G protein-coupled receptor L2
known_NIR_12058	chr3	151438190	151444957	-	151438190;151443960	151443860;151444957	ES	ENSMUST00000029671.9	known	0.12	1	7.0	1	5;9	n	0.67	2	1.0	2	1;1	n	0.00	0	2.0	0	2;2	n	0.43	5	6.5	5	6;7	y	0.00	0	10.0	0	9;11	n	-	-	-	-	-	-	0.18	1	4.5	1	5;4	n	-	-	-	-	-	-	0.00	0	7.5	0	9;6	n	0.00	0	4.0	0	3;5	n	0.00	0	6.5	0	4;9	n	0.00	0	5.0	0	7;3	n	ENSMUSG00000028037.14	Ifi44	chr3	protein_coding	interferon-induced protein 44
known_NIR_12059	chr3	151453291	151455473	-	151453291;151455281	151454782;151455473	ES	ENSMUST00000029671.9	known	0.00	0	1.0	0	1;1	n	0.00	0	1.5	0	3;0	n	0.00	0	3.0	0	2;4	n	0.31	2	4.5	2	5;4	y	0.00	0	2.5	0	3;2	n	-	-	-	-	-	-	0.00	0	1.5	0	2;1	n	-	-	-	-	-	-	0.00	0	5.5	0	9;2	n	0.00	0	5.0	0	7;3	n	0.00	0	1.5	0	1;2	n	0.00	0	3.5	0	6;1	n	ENSMUSG00000028037.14	Ifi44	chr3	protein_coding	interferon-induced protein 44
known_NIR_12060	chr3	151899255	151900687	-	151899255	151915472	A5SS	ENSMUST00000144950.8	known	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.30	3	7	3	7	y	0.18	3	14	3	14	y	0.00	0	4	0	4	n	0.22	2	7	2	7	n	0.50	2	2	2	2	n	0.00	0	5	0	5	n	0.08	1	11	1	11	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	ENSMUSG00000028035.14	Dnajb4	chr3	protein_coding	DnaJ heat shock protein family (Hsp40) member B4
known_NIR_12061	chr3	151899301	151915472	-	151899255	151915472	A3SS	ENSMUST00000144950.8	known	0.22	2	7	2	7	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.42	5	7	5	7	y	0.12	2	14	2	14	y	0.00	0	4	0	4	n	0.22	2	7	2	7	n	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.21	3	11	3	11	y	0.44	4	5	4	5	n	0.00	0	7	0	7	n	ENSMUSG00000028035.14	Dnajb4	chr3	protein_coding	DnaJ heat shock protein family (Hsp40) member B4
known_NIR_12062	chr3	151914583	151915472	-	151899255	151915472	A3SS	ENSMUST00000144950.8	known	0.22	2	7	2	7	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.15	2	11	2	11	y	0.00	0	5	0	5	n	0.22	2	7	2	7	n	ENSMUSG00000028035.14	Dnajb4	chr3	protein_coding	DnaJ heat shock protein family (Hsp40) member B4
known_NIR_12063	chr3	151919704;151920524	151920462;151921229	+	151919704	151921229	cassetteExon	ENSMUST00000166984.8	known	0.15	4.0	23	4;4	23	y	0.14	2.5	15	5;0	15	n	0.13	6.0	40	4;8	40	y	0.05	2.5	44	3;2	44	y	0.08	4.0	48	3;5	48	y	0.18	4.5	20	4;5	20	y	0.11	4.0	31	5;3	31	y	0.18	6.5	29	4;9	29	y	0.00	0.0	31	0;0	31	n	0.08	2.5	28	1;4	28	n	0.21	7.0	26	4;10	26	y	0.09	3.0	32	2;4	32	y	ENSMUSG00000028034.16	Fubp1	chr3	protein_coding	far upstream element (FUSE) binding protein 1
known_NIR_12064	chr3	151923085	151923469	+	151923085	151923472	A3SS	ENSMUST00000166984.8	known	0.39	11	17	11	17	y	0.30	8	19	8	19	y	0.59	32	22	32	22	y	0.45	20	24	20	24	y	0.34	21	40	21	40	y	0.29	10	24	10	24	y	0.46	18	21	18	21	y	0.42	15	21	15	21	y	0.29	9	22	9	22	y	0.44	17	22	17	22	y	0.39	13	20	13	20	y	0.37	17	29	17	29	y	ENSMUSG00000028034.16	Fubp1	chr3	protein_coding	far upstream element (FUSE) binding protein 1
known_NIR_12065	chr3	151931845	151933808	+	151931854	151933808	A5SS	ENSMUST00000166984.8	known	0.30	21	48	21	48	y	0.48	13	14	13	14	y	0.25	15	44	15	44	y	0.32	12	25	12	25	y	0.31	17	38	17	38	y	0.22	8	28	8	28	y	0.29	15	37	15	37	y	0.28	9	23	9	23	y	0.30	13	31	13	31	y	0.35	21	39	21	39	y	0.25	14	42	14	42	y	0.44	24	31	24	31	y	ENSMUSG00000028034.16	Fubp1	chr3	protein_coding	far upstream element (FUSE) binding protein 1
known_NIR_12066	chr3	151937659	151937892	+	151937659	151938032	A3SS	ENSMUST00000166984.8	known	0.00	0	43	0	43	n	0.00	0	42	0	42	n	0.00	0	55	0	55	n	0.00	0	31	0	31	n	0.06	3	46	3	46	y	0.00	0	23	0	23	n	0.00	0	55	0	55	n	0.14	3	19	3	19	y	0.00	0	48	0	48	n	0.16	7	36	7	36	y	0.00	0	40	0	40	n	0.00	0	39	0	39	n	ENSMUSG00000028034.16	Fubp1	chr3	protein_coding	far upstream element (FUSE) binding protein 1
known_NIR_12067	chr3	151937659	151940161	+	151937659	151938032	A3SS	ENSMUST00000166984.8	known	0.02	1	43	1	43	n	0.00	0	42	0	42	n	0.04	2	55	2	55	y	0.03	1	31	1	31	n	0.12	6	46	6	46	y	0.12	3	23	3	23	y	0.04	2	55	2	55	y	0.21	5	19	5	19	y	0.02	1	48	1	48	n	0.05	2	36	2	36	y	0.02	1	40	1	40	n	0.11	5	39	5	39	y	ENSMUSG00000028034.16	Fubp1	chr3	protein_coding	far upstream element (FUSE) binding protein 1
known_NIR_12068	chr3	151994779;151996546	151996097;152002754	-	151994779	152002754	cassetteExon	ENSMUST00000068243.11	known	1.00	0.5	0	1;0	0	n	1.00	2.0	0	2;2	0	n	0.75	6.0	2	7;5	2	y	1.00	1.5	0	0;3	0	n	1.00	3.0	0	2;4	0	n	1.00	1.5	0	2;1	0	n	1.00	1.5	0	2;1	0	n	1.00	2.0	0	0;4	0	n	1.00	1.0	0	2;0	0	n	1.00	1.0	0	1;1	0	n	1.00	0.5	0	1;0	0	n	1.00	2.5	0	1;4	0	n	ENSMUSG00000054942.14	Miga1	chr3	protein_coding	mitoguardin 1
known_NIR_12069	chr3	152063836	152064278	+	152063836	152064273	A3SS	ENSMUST00000117492.9	known	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.00	0	41	0	41	n	0.00	0	41	0	41	n	0.00	0	49	0	49	n	0.00	0	21	0	21	n	0.00	0	32	0	32	n	0.00	0	18	0	18	n	0.00	0	15	0	15	n	0.11	4	34	4	34	y	0.00	0	18	0	18	n	0.00	0	25	0	25	n	ENSMUSG00000025437.16	Usp33	chr3	protein_coding	ubiquitin specific peptidase 33
known_NIR_12070	chr3	152080426	152080528	+	152080426	152080552	A3SS	ENSMUST00000117492.9	known	0.70	26	11	26	11	y	0.70	14	6	14	6	y	0.51	25	24	25	24	y	0.65	24	13	24	13	y	0.70	37	16	37	16	y	0.46	6	7	6	7	y	0.55	27	22	27	22	y	0.46	11	13	11	13	y	0.65	11	6	11	6	y	0.52	30	28	30	28	y	0.56	19	15	19	15	y	0.66	27	14	27	14	y	ENSMUSG00000025437.16	Usp33	chr3	protein_coding	ubiquitin specific peptidase 33
known_NIR_12071	chr3	152087802	152088548	+	152087521	152088548	A5SS	ENSMUST00000117492.9	known	0.03	2	74	2	74	y	0.00	0	52	0	52	n	0.00	0	77	0	77	n	0.00	0	65	0	65	n	0.00	0	100	0	100	n	0.00	0	25	0	25	n	0.00	0	65	0	65	n	0.00	0	41	0	41	n	0.00	0	63	0	63	n	0.00	0	76	0	76	n	0.00	0	51	0	51	n	0.02	1	58	1	58	n	ENSMUSG00000025437.16	Usp33	chr3	protein_coding	ubiquitin specific peptidase 33
known_NIR_12072	chr3	152095468	152097287	+	152095480	152097287	A5SS	ENSMUST00000117492.9	known	0.00	0	53	0	53	n	0.00	0	60	0	60	n	0.01	1	80	1	80	n	0.04	2	43	2	43	y	0.00	0	77	0	77	n	0.00	0	35	0	35	n	0.00	0	73	0	73	n	0.00	0	46	0	46	n	0.00	0	37	0	37	n	0.05	3	59	3	59	y	0.00	0	55	0	55	n	0.03	2	60	2	60	y	ENSMUSG00000025437.16	Usp33	chr3	protein_coding	ubiquitin specific peptidase 33
known_NIR_12073	chr3	152102398	152125652	+	152101775	152125652	A5SS	ENSMUST00000106100.9	known	0.20	2	8	2	8	y	0.00	0	6	0	6	n	0.23	6	20	6	20	y	0.00	0	14	0	14	n	0.16	3	16	3	16	y	0.25	2	6	2	6	n	0.33	1	2	1	2	n	0.15	2	11	2	11	y	0.50	3	3	3	3	n	0.25	2	6	2	6	n	0.25	2	6	2	6	n	0.25	2	6	2	6	n	ENSMUSG00000039068.17	Zzz3	chr3	protein_coding	zinc finger, ZZ domain containing 3
known_NIR_12074	chr3	152125777	152152436	+	152125777;152128408	152128255;152152436	ES	ENSMUST00000106103.8	known	0.00	0	3.5	0	6;1	n	0.00	0	3.0	0	5;1	n	0.07	1	12.5	1	18;7	n	0.10	1	9.0	1	12;6	n	0.00	0	11.0	0	17;5	n	0.00	0	7.0	0	12;2	n	0.18	1	4.5	1	9;0	n	0.00	0	8.0	0	16;0	n	0.00	0	8.0	0	14;2	n	0.00	0	7.0	0	13;1	n	0.00	0	3.0	0	6;0	n	0.29	3	7.5	3	13;2	y	ENSMUSG00000039068.17	Zzz3	chr3	protein_coding	zinc finger, ZZ domain containing 3
known_NIR_12075	chr3	152128408	152132914	+	152128408	152152436	A3SS	ENSMUST00000106103.8	known	0.89	8	1	8	1	n	0.86	6	1	6	1	n	0.71	17	7	17	7	y	0.65	11	6	11	6	y	0.67	10	5	10	5	y	0.50	2	2	2	2	n	1.00	9	0	9	0	n	1.00	5	0	5	0	n	0.75	6	2	6	2	n	0.88	7	1	7	1	n	1.00	2	0	2	0	n	0.83	10	2	10	2	y	ENSMUSG00000039068.17	Zzz3	chr3	protein_coding	zinc finger, ZZ domain containing 3
known_NIR_12076	chr3	152128408	152152436	+	152128408;152134469	152132914;152152436	ES	ENSMUST00000106100.9	known	0.07	1	13.0	1	8;18	n	0.14	1	6.0	1	6;6	n	0.24	7	22.0	7	17;27	y	0.29	6	14.5	6	11;18	y	0.19	5	22.0	5	10;34	y	0.27	2	5.5	2	2;9	y	0.00	0	17.0	0	9;25	n	0.00	0	7.0	0	5;9	n	0.21	2	7.5	2	6;9	y	0.06	1	17.0	1	7;27	n	0.00	0	5.5	0	2;9	n	0.12	2	15.0	2	10;20	y	ENSMUSG00000039068.17	Zzz3	chr3	protein_coding	zinc finger, ZZ domain containing 3
known_NIR_12077	chr3	152134469	152152436	+	152125777	152152436	A5SS	ENSMUST00000200570.5	known	1.00	18	0	18	0	n	1.00	6	0	6	0	n	0.96	27	1	27	1	n	0.95	18	1	18	1	n	1.00	34	0	34	0	n	1.00	9	0	9	0	n	0.96	25	1	25	1	n	1.00	9	0	9	0	n	1.00	9	0	9	0	n	1.00	27	0	27	0	n	1.00	9	0	9	0	n	0.87	20	3	20	3	y	ENSMUSG00000039068.17	Zzz3	chr3	protein_coding	zinc finger, ZZ domain containing 3
known_NIR_12078	chr3	152134469	152152436	+	152128408	152152436	A5SS	ENSMUST00000106103.8	known	0.95	18	1	18	1	n	0.86	6	1	6	1	n	0.79	27	7	27	7	y	0.75	18	6	18	6	y	0.87	34	5	34	5	y	0.82	9	2	9	2	y	1.00	25	0	25	0	n	1.00	9	0	9	0	n	0.82	9	2	9	2	y	0.96	27	1	27	1	n	1.00	9	0	9	0	n	0.91	20	2	20	2	y	ENSMUSG00000039068.17	Zzz3	chr3	protein_coding	zinc finger, ZZ domain containing 3
known_NIR_12079	chr3	152134469	152152436	+	152152326	152152436	A5SS&ES	ENSMUST00000197987.5	known	0.95	18	1	18	1	n	0.75	6	2	6	2	n	0.96	27	1	27	1	n	0.86	18	3	18	3	y	0.81	34	8	34	8	y	0.82	9	2	9	2	y	0.86	25	4	25	4	y	0.75	9	3	9	3	y	0.75	9	3	9	3	y	0.87	27	4	27	4	y	0.75	9	3	9	3	y	0.95	20	1	20	1	n	ENSMUSG00000039068.17	Zzz3	chr3	protein_coding	zinc finger, ZZ domain containing 3
known_NIR_12080	chr3	152154563	152154653	+	152154563	152154650	A3SS	ENSMUST00000106103.8	known	0.00	0	19	0	19	n	0.00	0	24	0	24	n	0.07	2	27	2	27	y	0.15	3	17	3	17	y	0.00	0	29	0	29	n	0.00	0	13	0	13	n	0.00	0	22	0	22	n	0.06	1	16	1	16	n	0.00	0	8	0	8	n	0.06	2	32	2	32	y	0.00	0	8	0	8	n	0.09	2	20	2	20	y	ENSMUSG00000039068.17	Zzz3	chr3	protein_coding	zinc finger, ZZ domain containing 3
known_NIR_12081	chr3	152469346	152472076	+	152453410	152472076	A5SS	ENSMUST00000159899.8	known	0.00	0	68	0	68	n	0.00	0	74	0	74	n	0.00	0	87	0	87	n	0.02	2	85	2	85	y	0.02	3	120	3	120	y	0.00	0	37	0	37	n	0.02	2	116	2	116	y	0.02	1	51	1	51	n	0.01	1	66	1	66	n	0.01	1	90	1	90	n	0.01	1	78	1	78	n	0.00	0	90	0	90	n	ENSMUSG00000039047.18	Pigk	chr3	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class K
known_NIR_12082	chr3	153614552	153614986	-	153614536	153614986	A3SS	ENSMUST00000197438.5	known	0.80	109	27	109	27	y	0.80	117	30	117	30	y	0.79	186	50	186	50	y	0.80	116	29	116	29	y	0.83	149	31	149	31	y	0.78	77	22	77	22	y	0.76	151	49	151	49	y	0.80	93	23	93	23	y	0.83	96	20	96	20	y	0.77	147	44	147	44	y	0.80	146	36	146	36	y	0.83	172	36	172	36	y	ENSMUSG00000038975.15	Rabggtb	chr3	protein_coding	Rab geranylgeranyl transferase, b subunit
known_NIR_12083	chr3	153615235	153615898	-	153615235;153615798	153615701;153615898	ES	ENSMUST00000197438.5	known	0.86	84	13.5	84	15;12	y	0.83	83	17.0	83	23;11	y	0.87	155	24.0	155	20;28	y	0.87	99	14.5	99	21;8	y	0.84	136	26.5	136	29;24	y	0.80	62	15.5	62	13;18	y	0.83	133	27.5	133	32;23	y	0.82	53	12.0	53	16;8	y	0.81	84	19.5	84	23;16	y	0.87	145	21.5	145	20;23	y	0.81	76	17.5	76	16;19	y	0.88	137	18.0	137	18;18	y	ENSMUSG00000038975.15	Rabggtb	chr3	protein_coding	Rab geranylgeranyl transferase, b subunit
known_NIR_12084	chr3	153615963	153616328	-	153616003	153616328	A3SS	ENSMUST00000167111.6	known	0.00	0	101	0	101	n	0.00	0	90	0	90	n	0.00	0	194	0	194	n	0.00	0	119	0	119	n	0.00	0	157	0	157	n	0.00	0	71	0	71	n	0.00	0	177	0	177	n	0.00	0	66	0	66	n	0.02	2	83	2	83	y	0.00	0	130	0	130	n	0.00	0	103	0	103	n	0.01	1	169	1	169	n	ENSMUSG00000038975.15	Rabggtb	chr3	protein_coding	Rab geranylgeranyl transferase, b subunit
known_NIR_12085	chr3	153617669	153618234	-	153617669	153618571	A5SS	ENSMUST00000089950.11	known	0.00	0	29	0	29	n	0.00	0	19	0	19	n	0.04	2	53	2	53	y	0.00	0	19	0	19	n	0.00	0	41	0	41	n	0.00	0	20	0	20	n	0.00	0	34	0	34	n	0.00	0	23	0	23	n	0.00	0	26	0	26	n	0.00	0	44	0	44	n	0.00	0	21	0	21	n	0.00	0	29	0	29	n	ENSMUSG00000038975.15	Rabggtb	chr3	protein_coding	Rab geranylgeranyl transferase, b subunit
known_NIR_12086	chr3	153617669	153618551	-	153617669	153618571	A5SS	ENSMUST00000089950.11	known	0.09	3	29	3	29	y	0.05	1	19	1	19	n	0.00	0	53	0	53	n	0.00	0	19	0	19	n	0.00	0	41	0	41	n	0.00	0	20	0	20	n	0.00	0	34	0	34	n	0.00	0	23	0	23	n	0.00	0	26	0	26	n	0.00	0	44	0	44	n	0.09	2	21	2	21	y	0.06	2	29	2	29	y	ENSMUSG00000038975.15	Rabggtb	chr3	protein_coding	Rab geranylgeranyl transferase, b subunit
known_NIR_12087	chr3	153644804	153650033	-	153644804	153647520	5pMXE	ENSMUST00000130713.2	known	0.00	0	547	0	547	n	0.00	0	436	0	436	n	0.00	1	592	1	592	n	0.00	0	802	0	802	n	0.00	0	1069	0	1069	n	0.00	0	360	0	360	n	0.00	0	1017	0	1017	n	0.00	0	594	0	594	n	0.00	1	461	1	461	n	0.00	0	1084	0	1084	n	0.00	2	547	2	547	y	0.00	0	709	0	709	n	ENSMUSG00000062908.13	Acadm	chr3	protein_coding	acyl-Coenzyme A dehydrogenase, medium chain
known_NIR_12088	chr3	153644804	153650033	-	153644804;153647607	153647520;153650033	ES	ENSMUST00000072697.13	known	0.00	0	443.5	0	547;340	n	0.00	0	363.0	0	436;290	n	0.00	1	482.5	1	592;373	n	0.00	0	638.0	0	802;474	n	0.00	0	859.5	0	1069;650	n	0.00	0	279.5	0	360;199	n	0.00	0	831.0	0	1017;645	n	0.00	0	467.5	0	594;341	n	0.00	1	382.5	1	461;304	n	0.00	0	850.0	0	1084;616	n	0.00	2	461.5	2	547;376	y	0.00	0	579.5	0	709;450	n	ENSMUSG00000062908.13	Acadm	chr3	protein_coding	acyl-Coenzyme A dehydrogenase, medium chain
known_NIR_12089	chr3	153644804	153650033	-	153647607	153650033	3pMXE	ENSMUST00000135724.2	known	0.00	0	340	0	340	n	0.00	0	290	0	290	n	0.00	1	373	1	373	n	0.00	0	474	0	474	n	0.00	0	650	0	650	n	0.00	0	199	0	199	n	0.00	0	645	0	645	n	0.00	0	341	0	341	n	0.00	1	304	1	304	n	0.00	0	616	0	616	n	0.01	2	376	2	376	y	0.00	0	450	0	450	n	ENSMUSG00000062908.13	Acadm	chr3	protein_coding	acyl-Coenzyme A dehydrogenase, medium chain
known_NIR_12090	chr3	154285928	154296721	-	154285928;154293247	154293114;154296721	ES	ENSMUST00000052774.8	known	0.00	0	6.5	0	10;3	n	0.00	0	5.5	0	9;2	n	0.25	2	6.0	2	10;2	y	0.00	0	5.0	0	5;5	n	0.00	0	5.0	0	6;4	n	0.29	1	2.5	1	4;1	n	0.00	0	3.5	0	5;2	n	0.00	0	4.0	0	4;4	n	0.17	1	5.0	1	3;7	n	0.18	1	4.5	1	4;5	n	0.22	1	3.5	1	4;3	n	0.09	1	10.0	1	9;11	n	ENSMUSG00000047583.10	Tyw3	chr3	protein_coding	tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)
known_NIR_12091	chr3	154303149	154310529	+	154302921	154310529	A5SS	ENSMUST00000192462.6	known	0.00	0	78	0	78	n	0.01	1	95	1	95	n	0.00	0	81	0	81	n	0.00	0	142	0	142	n	0.00	0	119	0	119	n	0.02	1	49	1	49	n	0.00	0	127	0	127	n	0.00	0	56	0	56	n	0.00	0	107	0	107	n	0.02	4	168	4	168	y	0.00	0	119	0	119	n	0.00	0	118	0	118	n	ENSMUSG00000028199.19	Cryz	chr3	protein_coding	crystallin, zeta
known_NIR_12092	chr3	154303155	154310529	+	154302921	154310529	A5SS	ENSMUST00000192462.6	known	0.00	0	78	0	78	n	0.00	0	95	0	95	n	0.00	0	81	0	81	n	0.02	3	142	3	142	y	0.02	3	119	3	119	y	0.00	0	49	0	49	n	0.00	0	127	0	127	n	0.00	0	56	0	56	n	0.00	0	107	0	107	n	0.01	1	168	1	168	n	0.01	1	119	1	119	n	0.00	0	118	0	118	n	ENSMUSG00000028199.19	Cryz	chr3	protein_coding	crystallin, zeta
known_NIR_12093	chr3	154303164	154310529	+	154302921	154310529	A5SS	ENSMUST00000192462.6	known	0.00	0	78	0	78	n	0.02	2	95	2	95	y	0.04	3	81	3	81	y	0.03	5	142	5	142	y	0.01	1	119	1	119	n	0.06	3	49	3	49	y	0.06	8	127	8	127	y	0.05	3	56	3	56	y	0.01	1	107	1	107	n	0.02	4	168	4	168	y	0.00	0	119	0	119	n	0.00	0	118	0	118	n	ENSMUSG00000028199.19	Cryz	chr3	protein_coding	crystallin, zeta
known_NIR_12094	chr3	154310752	154312016	+	154310652	154312016	A5SS	ENSMUST00000192462.6	known	0.02	3	126	3	126	y	0.05	6	117	6	117	y	0.02	2	108	2	108	y	0.02	4	204	4	204	y	0.03	5	162	5	162	y	0.01	1	72	1	72	n	0.02	3	173	3	173	y	0.06	6	89	6	89	y	0.00	0	127	0	127	n	0.04	10	270	10	270	y	0.02	3	187	3	187	y	0.02	4	190	4	190	y	ENSMUSG00000028199.19	Cryz	chr3	protein_coding	crystallin, zeta
known_NIR_12095	chr3	154312168	154324097	+	154312168	154317047	3pMXE	ENSMUST00000155385.8	known	0.00	0	107	0	107	n	0.00	0	109	0	109	n	0.00	0	102	0	102	n	0.00	0	160	0	160	n	0.00	0	142	0	142	n	0.00	0	53	0	53	n	0.00	0	167	0	167	n	0.01	1	68	1	68	n	0.02	2	113	2	113	y	0.00	0	233	0	233	n	0.01	1	145	1	145	n	0.00	0	185	0	185	n	ENSMUSG00000028199.19	Cryz	chr3	protein_coding	crystallin, zeta
known_NIR_12096	chr3	154319510	154324097	+	154312168	154324097	A5SS	ENSMUST00000195103.2	known	1.00	116	0	116	0	n	1.00	134	0	134	0	n	1.00	106	0	106	0	n	1.00	164	0	164	0	n	1.00	165	0	165	0	n	1.00	70	0	70	0	n	1.00	185	0	185	0	n	0.99	67	1	67	1	n	0.98	114	2	114	2	y	1.00	262	0	262	0	n	0.99	158	1	158	1	n	1.00	175	0	175	0	n	ENSMUSG00000028199.19	Cryz	chr3	protein_coding	crystallin, zeta
known_NIR_12097	chr3	154797195	154798572	-	154797195	154798936	A5SS	ENSMUST00000066568.6	known	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.11	1	8	1	8	n	0.09	2	21	2	21	y	0.32	6	13	6	13	y	0.53	10	9	10	9	y	0.31	5	11	5	11	y	0.22	2	7	2	7	n	0.41	7	10	7	10	y	0.33	5	10	5	10	y	0.61	11	7	11	7	y	0.25	7	21	7	21	y	ENSMUSG00000053870.8	Fpgt	chr3	protein_coding	fucose-1-phosphate guanylyltransferase
known_NIR_12098	chr3	157242023	157242120	+	157242023	157242115	A3SS	ENSMUST00000106058.8	known	0.00	0	65	0	65	n	0.00	0	55	0	55	n	0.00	0	141	0	141	n	0.00	0	103	0	103	n	0.00	0	124	0	124	n	0.00	0	51	0	51	n	0.00	0	107	0	107	n	0.04	2	44	2	44	y	0.00	0	78	0	78	n	0.00	0	97	0	97	n	0.00	0	70	0	70	n	0.00	0	97	0	97	n	ENSMUSG00000028180.19	Zranb2	chr3	protein_coding	zinc finger, RAN-binding domain containing 2
known_NIR_12099	chr3	157242023	157243224	+	157242023;157242223	157242115;157243224	ES	ENSMUST00000106058.8	known	0.04	3	67.0	3	65;69	y	0.11	6	51.0	6	55;47	y	0.08	10	119.0	10	141;97	y	0.08	9	102.5	9	103;102	y	0.11	15	126.5	15	124;129	y	0.13	6	41.0	6	51;31	y	0.06	7	102.0	7	107;97	y	0.17	10	47.5	10	44;51	y	0.06	5	80.0	5	78;82	y	0.12	13	96.5	13	97;96	y	0.07	5	67.0	5	70;64	y	0.12	13	98.0	13	97;99	y	ENSMUSG00000028180.19	Zranb2	chr3	protein_coding	zinc finger, RAN-binding domain containing 2
known_NIR_12100	chr3	157242023;157242223	157242120;157243224	+	157242023	157243224	cassetteExon	ENSMUST00000184802.8	known	0.92	34.5	3	0;69	3	n	0.80	23.5	6	0;47	6	n	0.83	48.5	10	0;97	10	n	0.85	51.0	9	0;102	9	n	0.81	64.5	15	0;129	15	n	0.72	15.5	6	0;31	6	n	0.87	48.5	7	0;97	7	n	0.73	26.5	10	2;51	10	y	0.89	41.0	5	0;82	5	n	0.79	48.0	13	0;96	13	n	0.86	32.0	5	0;64	5	n	0.79	49.5	13	0;99	13	n	ENSMUSG00000028180.19	Zranb2	chr3	protein_coding	zinc finger, RAN-binding domain containing 2
known_NIR_12101	chr3	157247458	157248795	+	157247506	157248795	A5SS	ENSMUST00000106058.8	known	0.04	3	69	3	69	y	0.07	3	41	3	41	y	0.08	5	58	5	58	y	0.12	9	69	9	69	y	0.00	0	66	0	66	n	0.20	8	32	8	32	y	0.05	4	81	4	81	y	0.00	0	33	0	33	n	0.10	6	55	6	55	y	0.07	5	67	5	67	y	0.00	0	57	0	57	n	0.08	6	72	6	72	y	ENSMUSG00000028180.19	Zranb2	chr3	protein_coding	zinc finger, RAN-binding domain containing 2
known_NIR_12102	chr3	157250759;157251786	157251712;157252312	+	157250759	157252312	cassetteExon	ENSMUST00000106058.8	known	0.08	5.5	63	4;7	63	y	0.18	6.5	29	7;6	29	y	0.06	3.5	57	5;2	57	y	0.09	6.0	61	5;7	61	y	0.06	6.0	89	5;7	89	y	0.07	2.5	33	4;1	33	n	0.03	2.5	74	1;4	74	n	0.05	1.0	20	0;2	20	n	0.10	5.0	46	6;4	46	y	0.16	8.5	45	8;9	45	y	0.04	3.0	78	4;2	78	y	0.08	6.0	65	5;7	65	y	ENSMUSG00000028180.19	Zranb2	chr3	protein_coding	zinc finger, RAN-binding domain containing 2
known_NIR_12103	chr3	157631883	157634000	+	157631883	157632426	3pMXE	ENSMUST00000148898.2	known	0.00	0	2	0	2	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.27	3	8	3	8	y	0.25	1	3	1	3	n	0.17	1	5	1	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	ENSMUSG00000028177.14	1810013D15Rik	chr3	lncRNA	RIKEN cDNA 1810013D15 gene
known_NIR_12104	chr3	157677954	157680865	+	157677954	157678637	A3SS	ENSMUST00000197872.5	known	0.06	2	34	2	34	y	0.06	1	15	1	15	n	0.00	0	36	0	36	n	0.00	0	57	0	57	n	0.00	0	66	0	66	n	0.04	1	27	1	27	n	0.12	6	45	6	45	y	0.09	3	31	3	31	y	0.11	4	33	4	33	y	0.00	0	47	0	47	n	0.08	2	24	2	24	y	0.11	4	34	4	34	y	ENSMUSG00000039988.15	Ankrd13c	chr3	protein_coding	ankyrin repeat domain 13c
known_NIR_12105	chr3	157677954;157678682	157678637;157680865	+	157677954	157680865	cassetteExon	ENSMUST00000199727.5	known	0.94	30.5	2	34;27	2	y	0.95	18.5	1	15;22	1	n	1.00	30.5	0	36;25	0	n	1.00	51.5	0	57;46	0	n	1.00	65.0	0	66;64	0	n	0.96	26.0	1	27;25	1	n	0.88	44.5	6	45;44	6	y	0.91	29.5	3	31;28	3	y	0.86	25.5	4	33;18	4	y	1.00	45.5	0	47;44	0	n	0.92	24.5	2	24;25	2	y	0.88	28.5	4	34;23	4	y	ENSMUSG00000039988.15	Ankrd13c	chr3	protein_coding	ankyrin repeat domain 13c
known_NIR_12106	chr3	157699422	157700234	+	157697449	157700234	A5SS	ENSMUST00000199727.5	known	0.00	0	43	0	43	n	0.02	1	45	1	45	n	0.07	5	67	5	67	y	0.04	3	76	3	76	y	0.00	0	71	0	71	n	0.00	0	31	0	31	n	0.05	3	61	3	61	y	0.00	0	29	0	29	n	0.05	2	35	2	35	y	0.16	11	58	11	58	y	0.05	2	40	2	40	y	0.05	3	60	3	60	y	ENSMUSG00000039988.15	Ankrd13c	chr3	protein_coding	ankyrin repeat domain 13c
known_NIR_12107	chr3	157718533	157719589	-	157718512	157719589	A3SS	ENSMUST00000121326.8	known	0.03	4	138	4	138	y	0.09	11	112	11	112	y	0.10	18	159	18	159	y	0.07	12	149	12	149	y	0.09	16	158	16	158	y	0.09	7	73	7	73	y	0.10	17	147	17	147	y	0.12	13	91	13	91	y	0.10	15	131	15	131	y	0.14	24	150	24	150	y	0.15	21	117	21	117	y	0.07	12	163	12	163	y	ENSMUSG00000055436.19	Srsf11	chr3	protein_coding	serine and arginine-rich splicing factor 11
known_NIR_12108	chr3	157728587	157729760	-	157728587	157728880	5pMXE	ENSMUST00000199520.5	known	0.03	1	32	1	32	n	0.00	0	32	0	32	n	0.03	1	36	1	36	n	0.00	0	30	0	30	n	0.00	0	55	0	55	n	0.00	0	20	0	20	n	0.05	2	40	2	40	y	0.00	0	22	0	22	n	0.00	0	15	0	15	n	0.00	0	31	0	31	n	0.00	0	25	0	25	n	0.00	0	23	0	23	n	ENSMUSG00000055436.19	Srsf11	chr3	protein_coding	serine and arginine-rich splicing factor 11
known_NIR_12109	chr3	157728587	157729760	-	157728587;157728996	157728880;157729760	ES	ENSMUST00000126716.9	known	0.05	1	19.5	1	32;7	n	0.00	0	16.0	0	32;0	n	0.05	1	20.5	1	36;5	n	0.00	0	16.5	0	30;3	n	0.00	0	30.0	0	55;5	n	0.00	0	10.5	0	20;1	n	0.09	2	21.5	2	40;3	y	0.00	0	12.5	0	22;3	n	0.00	0	9.0	0	15;3	n	0.00	0	18.5	0	31;6	n	0.00	0	13.0	0	25;1	n	0.00	0	11.5	0	23;0	n	ENSMUSG00000055436.19	Srsf11	chr3	protein_coding	serine and arginine-rich splicing factor 11
known_NIR_12110	chr3	157728587	157732362	-	157728587	157728880	5pMXE	ENSMUST00000199520.5	known	0.41	22	32	22	32	y	0.36	18	32	18	32	y	0.46	31	36	31	36	y	0.52	32	30	32	30	y	0.32	26	55	26	55	y	0.46	17	20	17	20	y	0.46	34	40	34	40	y	0.45	18	22	18	22	y	0.46	13	15	13	15	y	0.58	43	31	43	31	y	0.48	23	25	23	25	y	0.61	36	23	36	23	y	ENSMUSG00000055436.19	Srsf11	chr3	protein_coding	serine and arginine-rich splicing factor 11
known_NIR_12111	chr3	157728587;157728996	157728880;157732362	-	157728587	157732362	cassetteExon	ENSMUST00000121326.8	known	0.44	17.0	22	32;2	22	y	0.47	16.0	18	32;0	18	n	0.38	19.0	31	36;2	31	y	0.33	15.5	32	30;1	32	n	0.51	27.5	26	55;0	26	n	0.37	10.0	17	20;0	17	n	0.37	20.0	34	40;0	34	n	0.38	11.0	18	22;0	18	n	0.41	9.0	13	15;3	13	y	0.30	18.5	43	31;6	43	y	0.40	15.5	23	25;6	23	y	0.27	13.5	36	23;4	36	y	ENSMUSG00000055436.19	Srsf11	chr3	protein_coding	serine and arginine-rich splicing factor 11
known_NIR_12112	chr3	157728587;157729868	157729760;157732362	-	157728587	157732362	cassetteExon	ENSMUST00000121326.8	known	0.10	2.5	22	1;4	22	n	0.03	0.5	18	0;1	18	n	0.07	2.5	31	1;4	31	n	0.04	1.5	32	0;3	32	n	0.15	4.5	26	0;9	26	n	0.13	2.5	17	0;5	17	n	0.15	6.0	34	2;10	34	y	0.08	1.5	18	0;3	18	n	0.13	2.0	13	0;4	13	n	0.09	4.0	43	0;8	43	n	0.13	3.5	23	0;7	23	n	0.13	5.5	36	0;11	36	n	ENSMUSG00000055436.19	Srsf11	chr3	protein_coding	serine and arginine-rich splicing factor 11
known_NIR_12113	chr3	157728996	157732362	-	157728996;157729868	157729760;157732362	ES	ENSMUST00000126716.9	known	0.27	2	5.5	2	7;4	y	0.00	0	0.5	0	0;1	n	0.31	2	4.5	2	5;4	y	0.25	1	3.0	1	3;3	n	0.00	0	7.0	0	5;9	n	0.00	0	3.0	0	1;5	n	0.00	0	6.5	0	3;10	n	0.00	0	3.0	0	3;3	n	0.46	3	3.5	3	3;4	y	0.46	6	7.0	6	6;8	y	0.60	6	4.0	6	1;7	n	0.42	4	5.5	4	0;11	n	ENSMUSG00000055436.19	Srsf11	chr3	protein_coding	serine and arginine-rich splicing factor 11
known_NIR_12114	chr3	157729868;157730398	157730335;157732362	-	157729868	157732362	cassetteExon	ENSMUST00000126716.9	known	0.00	0.0	4	0;0	4	n	0.86	6.0	1	5;7	1	n	0.47	3.5	4	2;5	4	y	0.40	2.0	3	1;3	3	n	0.28	3.5	9	4;3	9	y	0.33	2.5	5	3;2	5	y	0.13	1.5	10	2;1	10	n	0.40	2.0	3	4;0	3	n	0.50	4.0	4	5;3	4	y	0.36	4.5	8	5;4	8	y	0.07	0.5	7	0;1	7	n	0.19	2.5	11	4;1	11	n	ENSMUSG00000055436.19	Srsf11	chr3	protein_coding	serine and arginine-rich splicing factor 11
known_NIR_12115	chr3	157730398	157732362	-	157728587	157732362	A3SS	ENSMUST00000121326.8	known	0.00	0	22	0	22	n	0.28	7	18	7	18	y	0.14	5	31	5	31	y	0.09	3	32	3	32	y	0.10	3	26	3	26	y	0.11	2	17	2	17	y	0.03	1	34	1	34	n	0.00	0	18	0	18	n	0.19	3	13	3	13	y	0.09	4	43	4	43	y	0.04	1	23	1	23	n	0.03	1	36	1	36	n	ENSMUSG00000055436.19	Srsf11	chr3	protein_coding	serine and arginine-rich splicing factor 11
known_NIR_12116	chr3	157730398	157732362	-	157728996	157732362	A3SS	ENSMUST00000147304.3	known	0.00	0	2	0	2	n	1.00	7	0	7	0	n	0.71	5	2	5	2	n	0.75	3	1	3	1	n	1.00	3	0	3	0	n	1.00	2	0	2	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	3	3	3	3	n	0.40	4	6	4	6	y	0.14	1	6	1	6	n	0.20	1	4	1	4	n	ENSMUSG00000055436.19	Srsf11	chr3	protein_coding	serine and arginine-rich splicing factor 11
known_NIR_12117	chr3	157737285;157737703	157737628;157742153	-	157737285	157742153	cassetteExon	ENSMUST00000121326.8	known	0.01	0.5	48	0;1	48	n	0.00	0.0	21	0;0	21	n	0.00	0.0	49	0;0	49	n	0.01	0.5	52	0;1	52	n	0.00	0.0	64	0;0	64	n	0.00	0.0	28	0;0	28	n	0.00	0.0	42	0;0	42	n	0.04	1.5	40	3;0	40	n	0.03	1.5	54	1;2	54	n	0.07	3.0	41	4;2	41	y	0.03	1.0	38	1;1	38	n	0.02	1.0	58	0;2	58	n	ENSMUSG00000055436.19	Srsf11	chr3	protein_coding	serine and arginine-rich splicing factor 11
known_NIR_12118	chr3	157742513;157746259	157746078;157749198	+	157742513	157749198	cassetteExon	ENSMUST00000156597.8	known	1.00	6.0	0	10;2	0	n	0.85	5.5	1	11;0	1	n	0.89	8.5	1	15;2	1	n	1.00	16.0	0	28;4	0	n	0.86	12.0	2	17;7	2	y	1.00	6.0	0	10;2	0	n	1.00	10.0	0	15;5	0	n	1.00	6.0	0	10;2	0	n	0.57	4.0	3	6;2	3	y	1.00	9.5	0	13;6	0	n	1.00	6.0	0	6;6	0	n	0.76	12.5	4	20;5	4	y	ENSMUSG00000063052.10	Lrrc40	chr3	protein_coding	leucine rich repeat containing 40
known_NIR_12119	chr3	157746259	157749198	+	157746259;157747296	157747223;157749198	ES	ENSMUST00000072080.10	known	0.25	2	6.0	2	5;7	y	0.00	0	8.0	0	8;8	n	0.11	2	17.0	2	20;14	y	0.29	4	10.0	4	9;11	y	0.36	7	12.5	7	13;12	y	0.20	2	8.0	2	9;7	y	0.32	5	10.5	5	10;11	y	0.21	2	7.5	2	9;6	y	0.17	2	9.5	2	11;8	y	0.27	6	16.0	6	17;15	y	0.34	6	11.5	6	13;10	y	0.30	5	11.5	5	9;14	y	ENSMUSG00000063052.10	Lrrc40	chr3	protein_coding	leucine rich repeat containing 40
known_NIR_12120	chr3	157746259	157749198	+	157746259;157747570	157747500;157749198	ES	ENSMUST00000150525.8	known	0.80	2	0.5	2	1;0	n	-	-	-	-	-	-	1.00	2	0.0	2	0;0	n	1.00	4	0.0	4	0;0	n	0.93	7	0.5	7	0;1	n	0.67	2	1.0	2	0;2	n	0.83	5	1.0	5	2;0	n	1.00	2	0.0	2	0;0	n	0.67	2	1.0	2	1;1	n	1.00	6	0.0	6	0;0	n	1.00	6	0.0	6	0;0	n	0.67	5	2.5	5	2;3	y	ENSMUSG00000063052.10	Lrrc40	chr3	protein_coding	leucine rich repeat containing 40
known_NIR_12121	chr3	157746259;157747570	157747223;157749198	+	157746259	157749198	cassetteExon	ENSMUST00000131518.8	known	0.56	2.5	2	5;0	2	n	1.00	4.0	0	8;0	0	n	0.83	10.0	2	20;0	2	n	0.53	4.5	4	9;0	4	n	0.50	7.0	7	13;1	7	n	0.73	5.5	2	9;2	2	y	0.50	5.0	5	10;0	5	n	0.69	4.5	2	9;0	2	n	0.75	6.0	2	11;1	2	n	0.59	8.5	6	17;0	6	n	0.52	6.5	6	13;0	6	n	0.55	6.0	5	9;3	5	y	ENSMUSG00000063052.10	Lrrc40	chr3	protein_coding	leucine rich repeat containing 40
known_NIR_12122	chr3	157746259;157747570	157747500;157749198	+	157746259;157747296	157747223;157749198	MXE	ENSMUST00000072080.10	known	0.08	0.5	6.0	1;0	5;7	n	0.00	0.0	8.0	0;0	8;8	n	0.00	0.0	17.0	0;0	20;14	n	0.00	0.0	10.0	0;0	9;11	n	0.04	0.5	12.5	0;1	13;12	n	0.11	1.0	8.0	0;2	9;7	n	0.09	1.0	10.5	2;0	10;11	n	0.00	0.0	7.5	0;0	9;6	n	0.10	1.0	9.5	1;1	11;8	n	0.00	0.0	16.0	0;0	17;15	n	0.00	0.0	11.5	0;0	13;10	n	0.18	2.5	11.5	2;3	9;14	y	ENSMUSG00000063052.10	Lrrc40	chr3	protein_coding	leucine rich repeat containing 40
known_NIR_12123	chr3	157747296	157749198	+	157742513	157749198	A5SS	ENSMUST00000156597.8	known	1.00	7	0	7	0	n	0.89	8	1	8	1	n	0.93	14	1	14	1	n	1.00	11	0	11	0	n	0.86	12	2	12	2	y	1.00	7	0	7	0	n	1.00	11	0	11	0	n	1.00	6	0	6	0	n	0.73	8	3	8	3	y	1.00	15	0	15	0	n	1.00	10	0	10	0	n	0.78	14	4	14	4	y	ENSMUSG00000063052.10	Lrrc40	chr3	protein_coding	leucine rich repeat containing 40
known_NIR_12124	chr3	16238110;16241279	16241131;16243642	+	16238110	16243642	cassetteExon	ENSMUST00000108345.9	known	0.16	6.5	35	5;8	35	y	0.12	3.0	21	3;3	21	y	0.11	8.5	70	12;5	70	y	0.09	7.5	75	7;8	75	y	0.14	8.5	51	4;13	51	y	0.17	5.5	27	4;7	27	y	0.13	6.0	41	8;4	41	y	0.04	2.0	50	0;4	50	n	0.21	6.5	25	6;7	25	y	0.12	7.5	57	11;4	57	y	0.13	5.0	33	2;8	33	y	0.08	5.0	57	3;7	57	y	ENSMUSG00000047213.15	Ythdf3	chr3	protein_coding	YTH N6-methyladenosine RNA binding protein 3
known_NIR_12125	chr3	16241881	16243642	+	16238110	16243642	A5SS	ENSMUST00000108345.9	known	0.00	0	35	0	35	n	0.00	0	21	0	21	n	0.00	0	70	0	70	n	0.00	0	75	0	75	n	0.04	2	51	2	51	y	0.04	1	27	1	27	n	0.00	0	41	0	41	n	0.00	0	50	0	50	n	0.00	0	25	0	25	n	0.00	0	57	0	57	n	0.00	0	33	0	33	n	0.00	0	57	0	57	n	ENSMUSG00000047213.15	Ythdf3	chr3	protein_coding	YTH N6-methyladenosine RNA binding protein 3
known_NIR_12126	chr3	16243727;16257383	16257351;16257990	+	16243727	16257990	cassetteExon	ENSMUST00000108345.9	known	0.28	18.0	46	14;22	46	y	0.38	13.5	22	13;14	22	y	0.22	15.5	56	16;15	56	y	0.29	19.5	47	18;21	47	y	0.34	25.0	49	29;21	49	y	0.39	18.0	28	19;17	28	y	0.34	19.0	37	18;20	37	y	0.22	14.0	50	13;15	50	y	0.31	16.0	35	16;16	35	y	0.35	24.0	44	25;23	44	y	0.44	15.0	19	16;14	19	y	0.41	32.0	47	34;30	47	y	ENSMUSG00000047213.15	Ythdf3	chr3	protein_coding	YTH N6-methyladenosine RNA binding protein 3
known_NIR_12127	chr3	19243056	19254190	+	19242452	19254190	A5SS	ENSMUST00000130645.8	known	0.04	2	44	2	44	y	0.13	5	33	5	33	y	0.23	14	46	14	46	y	0.10	6	57	6	57	y	0.19	13	54	13	54	y	0.10	4	38	4	38	y	0.08	5	54	5	54	y	0.06	2	33	2	33	y	0.17	5	24	5	24	y	0.08	6	73	6	73	y	0.14	8	49	8	49	y	0.10	6	55	6	55	y	ENSMUSG00000027601.14	Mtfr1	chr3	protein_coding	mitochondrial fission regulator 1
known_NIR_12128	chr3	19287355	19287624	-	19287355	19287840	A5SS	ENSMUST00000099195.10	known	0.00	0	2	0	2	n	0.40	2	3	2	3	n	0.00	0	10	0	10	n	0.40	2	3	2	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.12	2	15	2	15	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.33	2	4	2	4	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000069094.13	Pde7a	chr3	protein_coding	phosphodiesterase 7A
known_NIR_12129	chr3	20011593	20020403	+	20011593;20018691	20018444;20020403	ES	ENSMUST00000091309.12	known	0.00	3	997.5	3	905;1090	y	0.00	0	735.0	0	620;850	n	0.00	7	7641.5	7	7002;8281	y	0.00	0	1596.0	0	1429;1763	n	0.00	7	4339.0	7	4004;4674	y	0.00	5	4619.0	5	4249;4989	y	0.00	5	2377.5	5	2175;2580	y	0.00	8	5567.5	8	5095;6040	y	0.00	1	950.5	1	885;1016	n	0.00	0	1495.5	0	1388;1603	n	0.00	0	713.5	0	618;809	n	0.00	0	1351.5	0	1201;1502	n	ENSMUSG00000003617.17	Cp	chr3	protein_coding	ceruloplasmin
known_NIR_12130	chr3	20028093	20029026	+	20028093	20029023	A3SS	ENSMUST00000091309.12	known	0.78	1136	317	1136	317	y	0.78	1081	309	1081	309	y	0.80	7859	1975	7859	1975	y	0.80	1518	374	1518	374	y	0.81	4890	1143	4890	1143	y	0.80	5035	1274	5035	1274	y	0.80	2805	684	2805	684	y	0.80	5336	1325	5336	1325	y	0.81	1146	261	1146	261	y	0.79	1619	421	1619	421	y	0.77	916	267	916	267	y	0.78	1409	394	1409	394	y	ENSMUSG00000003617.17	Cp	chr3	protein_coding	ceruloplasmin
known_NIR_12131	chr3	20035005	20036127	+	20034962	20036127	A5SS	ENSMUST00000091309.12	known	0.00	3	2552	3	2552	y	0.00	0	2798	0	2798	n	0.00	4	13399	4	13399	y	0.00	0	2627	0	2627	n	0.00	3	8137	3	8137	y	0.00	5	8510	5	8510	y	0.00	7	5434	7	5434	y	0.00	8	8493	8	8493	y	0.00	0	2158	0	2158	n	0.00	0	3005	0	3005	n	0.00	1	1954	1	1954	n	0.00	2	2519	2	2519	y	ENSMUSG00000003617.17	Cp	chr3	protein_coding	ceruloplasmin
known_NIR_12132	chr3	20043382	20059631	+	20043382	20046673	3pMXE	ENSMUST00000091309.12	known	0.00	10	4589	10	4589	y	0.00	15	6669	15	6669	y	0.00	23	20379	23	20379	y	0.00	12	3506	12	3506	y	0.00	12	12590	12	12590	y	0.00	13	12764	13	12764	y	0.00	21	10111	21	10111	y	0.00	11	11383	11	11383	y	0.00	12	3599	12	3599	y	0.00	12	5028	12	5028	y	0.00	14	3991	14	3991	y	0.00	11	3744	11	3744	y	ENSMUSG00000003617.17	Cp	chr3	protein_coding	ceruloplasmin
known_NIR_12133	chr3	20043404	20046673	+	20043382	20046673	A5SS	ENSMUST00000091309.12	known	0.00	8	4589	8	4589	y	0.00	9	6669	9	6669	y	0.00	34	20379	34	20379	y	0.00	3	3506	3	3506	y	0.00	22	12590	22	12590	y	0.00	26	12764	26	12764	y	0.00	19	10111	19	10111	y	0.00	12	11383	12	11383	y	0.00	4	3599	4	3599	y	0.00	6	5028	6	5028	y	0.00	5	3991	5	3991	y	0.00	6	3744	6	3744	y	ENSMUSG00000003617.17	Cp	chr3	protein_coding	ceruloplasmin
known_NIR_12134	chr3	20056581	20057389	-	20056577	20057389	A3SS	ENSMUST00000012580.13	known	0.15	2	11	2	11	y	0.23	3	10	3	10	y	0.00	0	7	0	7	n	0.13	2	13	2	13	y	0.05	1	18	1	18	n	0.00	0	6	0	6	n	0.15	4	22	4	22	y	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.07	1	13	1	13	n	0.18	3	14	3	14	y	0.20	5	20	5	20	y	ENSMUSG00000027615.15	Hps3	chr3	protein_coding	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1
known_NIR_12135	chr3	20059735	20062704	+	20059735	20060714	3pMXE	ENSMUST00000108329.8	known	0.85	11	2	11	2	y	0.69	11	5	11	5	y	0.79	23	6	23	6	y	0.67	4	2	4	2	n	0.79	11	3	11	3	y	0.67	4	2	4	2	n	0.92	12	1	12	1	n	1.00	7	0	7	0	n	1.00	6	0	6	0	n	0.73	8	3	8	3	y	1.00	12	0	12	0	n	0.77	10	3	10	3	y	ENSMUSG00000003617.17	Cp	chr3	protein_coding	ceruloplasmin
known_NIR_12136	chr3	20073083	20076922	-	20073083;20074121	20073967;20076922	ES	ENSMUST00000012580.13	known	0.00	0	8.0	0	9;7	n	0.40	1	1.5	1	1;2	n	0.15	1	5.5	1	6;5	n	0.11	1	8.0	1	7;9	n	0.18	3	14.0	3	13;15	y	0.57	4	3.0	4	3;3	y	0.00	0	7.5	0	6;9	n	0.00	0	9.0	0	8;10	n	0.33	2	4.0	2	6;2	y	0.27	3	8.0	3	4;12	y	0.00	0	5.0	0	1;9	n	0.00	0	7.5	0	9;6	n	ENSMUSG00000027615.15	Hps3	chr3	protein_coding	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1
known_NIR_12137	chr3	20146980	20152244	+	20146980	20159805	A3SS	ENSMUST00000143005.8	known	1.00	20	0	20	0	n	0.86	6	1	6	1	n	0.83	15	3	15	3	y	1.00	10	0	10	0	n	1.00	21	0	21	0	n	1.00	8	0	8	0	n	1.00	13	0	13	0	n	0.90	9	1	9	1	n	1.00	11	0	11	0	n	1.00	6	0	6	0	n	1.00	1	0	1	0	n	0.83	10	2	10	2	y	ENSMUSG00000002428.13	Hltf	chr3	protein_coding	helicase-like transcription factor
known_NIR_12138	chr3	20154119	20159805	+	20146980	20159805	A5SS	ENSMUST00000143005.8	known	1.00	10	0	10	0	n	0.89	8	1	8	1	n	0.80	12	3	12	3	y	1.00	7	0	7	0	n	1.00	15	0	15	0	n	1.00	8	0	8	0	n	1.00	12	0	12	0	n	0.94	16	1	16	1	n	1.00	9	0	9	0	n	1.00	19	0	19	0	n	1.00	7	0	7	0	n	0.85	11	2	11	2	y	ENSMUSG00000002428.13	Hltf	chr3	protein_coding	helicase-like transcription factor
known_NIR_12139	chr3	20177028	20179422	-	20177028	20177286	5pMXE	ENSMUST00000135475.2	known	1.00	18	0	18	0	n	1.00	17	0	17	0	n	1.00	22	0	22	0	n	1.00	22	0	22	0	n	1.00	21	0	21	0	n	1.00	13	0	13	0	n	0.97	66	2	66	2	y	1.00	12	0	12	0	n	1.00	18	0	18	0	n	1.00	19	0	19	0	n	1.00	20	0	20	0	n	1.00	12	0	12	0	n	ENSMUSG00000019528.19	Gyg	chr3	protein_coding	glycogenin
known_NIR_12140	chr3	22131118	22203106	+	22131118;22143686	22143577;22203106	ES	ENSMUST00000193734.6	known	0.95	9	0.5	9	1;0	n	0.67	1	0.5	1	0;1	n	0.89	25	3.0	25	1;5	n	0.82	7	1.5	7	0;3	n	0.70	7	3.0	7	1;5	n	0.86	12	2.0	12	2;2	y	0.87	10	1.5	10	0;3	n	0.89	12	1.5	12	1;2	n	0.00	0	1.0	0	0;2	n	0.88	14	2.0	14	2;2	y	1.00	5	0.0	5	0;0	n	0.67	4	2.0	4	2;2	n	ENSMUSG00000027630.14	Tbl1xr1	chr3	protein_coding	transducin (beta)-like 1X-linked receptor 1
known_NIR_12141	chr3	22131118	22233367	+	22131118;22203172	22203106;22233367	ES	ENSMUST00000202747.4	known	0.00	0	9.5	0	9;10	n	0.00	0	3.5	0	1;6	n	0.00	0	30.0	0	25;35	n	0.12	2	14.0	2	7;21	y	0.00	0	13.5	0	7;20	n	0.00	0	18.0	0	12;24	n	0.00	0	15.5	0	10;21	n	0.00	0	17.0	0	12;22	n	0.00	0	5.5	0	0;11	n	0.00	0	18.5	0	14;23	n	0.00	0	5.5	0	5;6	n	0.00	0	10.0	0	4;16	n	ENSMUSG00000027630.14	Tbl1xr1	chr3	protein_coding	transducin (beta)-like 1X-linked receptor 1
known_NIR_12142	chr3	22131118	22233367	+	22203172	22233367	5pMXE	ENSMUST00000201509.2	known	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	35	0	35	n	0.09	2	21	2	21	y	0.00	0	20	0	20	n	0.00	0	24	0	24	n	0.00	0	21	0	21	n	0.00	0	22	0	22	n	0.00	0	11	0	11	n	0.00	0	23	0	23	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	ENSMUSG00000027630.14	Tbl1xr1	chr3	protein_coding	transducin (beta)-like 1X-linked receptor 1
known_NIR_12143	chr3	22131118;22157111	22157031;22203106	+	22131118	22203106	cassetteExon	ENSMUST00000202747.4	known	0.10	1.0	9	1;1	9	n	0.33	0.5	1	0;1	1	n	0.11	3.0	25	4;2	25	y	0.07	0.5	7	1;0	7	n	0.12	1.0	7	1;1	7	n	0.04	0.5	12	0;1	12	n	0.23	3.0	10	1;5	10	n	0.14	2.0	12	1;3	12	n	-	-	-	-	-	-	0.33	7.0	14	4;10	14	y	0.23	1.5	5	1;2	5	n	0.38	2.5	4	3;2	4	n	ENSMUSG00000027630.14	Tbl1xr1	chr3	protein_coding	transducin (beta)-like 1X-linked receptor 1
known_NIR_12144	chr3	22131118;22157111	22157031;22203106	+	22131118;22143686	22143577;22203106	MXE	ENSMUST00000193734.6	known	0.67	1.0	0.5	1;1	1;0	n	0.50	0.5	0.5	0;1	0;1	n	0.50	3.0	3.0	4;2	1;5	n	0.25	0.5	1.5	1;0	0;3	n	0.25	1.0	3.0	1;1	1;5	n	0.20	0.5	2.0	0;1	2;2	n	0.67	3.0	1.5	1;5	0;3	n	0.57	2.0	1.5	1;3	1;2	n	0.00	0.0	1.0	0;0	0;2	n	0.78	7.0	2.0	4;10	2;2	y	1.00	1.5	0.0	1;2	0;0	n	0.56	2.5	2.0	3;2	2;2	n	ENSMUSG00000027630.14	Tbl1xr1	chr3	protein_coding	transducin (beta)-like 1X-linked receptor 1
known_NIR_12145	chr3	22194702	22203106	+	22131118	22203106	A5SS	ENSMUST00000202747.4	known	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.14	4	25	4	25	y	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.08	1	12	1	12	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	1.00	3	0	3	0	n	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	ENSMUSG00000027630.14	Tbl1xr1	chr3	protein_coding	transducin (beta)-like 1X-linked receptor 1
known_NIR_12146	chr3	22203172	22242530	+	22203172;22233469	22233367;22242530	ES	ENSMUST00000193734.6	known	0.00	0	12.5	0	10;15	n	0.00	0	8.0	0	6;10	n	0.00	0	37.0	0	35;39	n	0.00	0	21.5	0	21;22	n	0.00	0	22.5	0	20;25	n	0.00	0	23.0	0	24;22	n	0.10	3	27.0	3	21;33	y	0.05	1	20.5	1	22;19	n	0.00	0	7.5	0	11;4	n	0.00	0	22.5	0	23;22	n	0.12	1	7.0	1	6;8	n	0.00	0	16.0	0	16;16	n	ENSMUSG00000027630.14	Tbl1xr1	chr3	protein_coding	transducin (beta)-like 1X-linked receptor 1
known_NIR_12147	chr3	22258156	22263680	+	22258156	22263676	A3SS	ENSMUST00000193734.6	known	0.00	0	21	0	21	n	0.00	0	13	0	13	n	0.00	0	84	0	84	n	0.00	0	35	0	35	n	0.05	3	52	3	52	y	0.00	0	47	0	47	n	0.00	0	55	0	55	n	0.00	0	32	0	32	n	0.00	0	29	0	29	n	0.00	0	48	0	48	n	0.00	0	28	0	28	n	0.00	0	26	0	26	n	ENSMUSG00000027630.14	Tbl1xr1	chr3	protein_coding	transducin (beta)-like 1X-linked receptor 1
known_NIR_12148	chr3	27697238	27736887	-	27697238	27765269	A5SS	ENSMUST00000191684.2	known	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.11	5	40	5	40	y	0.25	1	3	1	3	n	0.12	3	21	3	21	y	0.26	6	17	6	17	y	0.00	0	6	0	6	n	0.38	9	15	9	15	y	0.14	1	6	1	6	n	0.29	2	5	2	5	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	ENSMUSG00000039286.13	Fndc3b	chr3	protein_coding	fibronectin type III domain containing 3B
known_NIR_12149	chr3	27697238	27764495	-	27697238	27736887	A5SS&ES	ENSMUST00000195008.6	known	-	-	-	-	-	-	1.00	1	0	1	0	n	0.78	18	5	18	5	y	0.50	1	1	1	1	n	0.81	13	3	13	3	y	0.54	7	6	7	6	y	1.00	7	0	7	0	n	0.44	7	9	7	9	y	0.67	2	1	2	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039286.13	Fndc3b	chr3	protein_coding	fibronectin type III domain containing 3B
known_NIR_12150	chr3	27697238	27765269	-	27697238	27764495	5pMXE	ENSMUST00000046157.10	known	1.00	7	0	7	0	n	0.67	2	1	2	1	n	0.69	40	18	40	18	y	0.75	3	1	3	1	n	0.62	21	13	21	13	y	0.71	17	7	17	7	y	0.46	6	7	6	7	y	0.68	15	7	15	7	y	0.75	6	2	6	2	n	1.00	5	0	5	0	n	1.00	1	0	1	0	n	1.00	5	0	5	0	n	ENSMUSG00000039286.13	Fndc3b	chr3	protein_coding	fibronectin type III domain containing 3B
known_NIR_12151	chr3	28038485	28078312	+	28006811	28078312	A5SS	ENSMUST00000120834.8	known	0.00	0	4	0	4	n	0.50	1	1	1	1	n	0.35	6	11	6	11	y	0.57	8	6	8	6	y	0.38	6	10	6	10	y	0.27	4	11	4	11	y	0.42	5	7	5	7	y	0.87	13	2	13	2	y	0.71	5	2	5	2	n	0.75	3	1	3	1	n	0.60	3	2	3	2	n	0.65	11	6	11	6	y	ENSMUSG00000027695.17	Pld1	chr3	protein_coding	phospholipase D1
known_NIR_12152	chr3	28184579	28184889	+	28184579	28185663	A3SS	ENSMUST00000120834.8	known	0.00	0	20	0	20	n	0.05	1	20	1	20	n	0.00	0	43	0	43	n	0.05	1	18	1	18	n	0.04	2	55	2	55	y	0.00	0	15	0	15	n	0.00	0	27	0	27	n	0.00	0	25	0	25	n	0.00	0	15	0	15	n	0.00	0	19	0	19	n	0.00	0	13	0	13	n	0.03	1	29	1	29	n	ENSMUSG00000027695.17	Pld1	chr3	protein_coding	phospholipase D1
known_NIR_12153	chr3	28859692	28860652	+	28859692	28860649	A3SS	ENSMUST00000043867.11	known	0.74	176	62	176	62	y	0.77	212	65	212	65	y	0.76	511	158	511	158	y	0.70	173	74	173	74	y	0.71	367	148	367	148	y	0.76	305	94	305	94	y	0.75	442	146	442	146	y	0.79	285	75	285	75	y	0.77	244	74	244	74	y	0.72	256	101	256	101	y	0.77	286	87	286	87	y	0.76	259	81	259	81	y	ENSMUSG00000039221.11	Rpl22l1	chr3	protein_coding	ribosomal protein L22 like 1
known_NIR_12154	chr3	28859730	28860652	+	28859692	28860652	A5SS	ENSMUST00000194649.2	known	0.01	1	176	1	176	n	0.00	0	212	0	212	n	0.00	0	511	0	511	n	0.00	0	173	0	173	n	0.00	1	367	1	367	n	0.00	0	305	0	305	n	0.00	1	442	1	442	n	0.00	0	285	0	285	n	0.01	2	244	2	244	y	0.00	1	256	1	256	n	0.01	2	286	2	286	y	0.00	0	259	0	259	n	ENSMUSG00000039221.11	Rpl22l1	chr3	protein_coding	ribosomal protein L22 like 1
known_NIR_12155	chr3	28860741	28860819	+	28860741	28860886	A3SS	ENSMUST00000043867.11	known	0.06	33	510	33	510	y	0.07	36	492	36	492	y	0.02	29	1255	29	1255	y	0.06	27	396	27	396	y	0.04	37	931	37	931	y	0.02	12	733	12	733	y	0.04	41	1087	41	1087	y	0.01	9	666	9	666	y	0.04	23	540	23	540	y	0.08	53	632	53	632	y	0.07	54	703	54	703	y	0.08	57	659	57	659	y	ENSMUSG00000039221.11	Rpl22l1	chr3	protein_coding	ribosomal protein L22 like 1
known_NIR_12156	chr3	30657819	30661186	+	30657949	30661186	A5SS	ENSMUST00000192715.6	known	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.83	5	1	5	1	n	0.33	5	10	5	10	y	0.13	2	13	2	13	y	0.33	1	2	1	2	n	0.14	1	6	1	6	n	-	-	-	-	-	-	0.20	1	4	1	4	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.33	2	4	2	4	n	ENSMUSG00000037730.14	Mynn	chr3	protein_coding	myoneurin
known_NIR_12157	chr3	30665768	30667701	+	30665768;30666701	30666618;30667701	ES	ENSMUST00000192715.6	known	0.56	5	4.0	5	3;5	y	0.00	0	10.0	0	6;14	n	0.31	4	9.0	4	10;8	y	0.41	7	10.0	7	11;9	y	0.60	9	6.0	9	6;6	y	0.55	6	5.0	6	7;3	y	0.25	3	9.0	3	11;7	y	0.29	2	5.0	2	6;4	y	0.40	4	6.0	4	5;7	y	0.57	10	7.5	10	6;9	y	0.12	1	7.0	1	7;7	n	0.37	5	8.5	5	8;9	y	ENSMUSG00000037730.14	Mynn	chr3	protein_coding	myoneurin
known_NIR_12158	chr3	30986041;30990148	30990101;30990434	-	30986041	30990434	cassetteExon	ENSMUST00000168645.8	known	0.17	1.0	5	1;1	5	n	-	-	-	-	-	-	0.38	3.0	5	3;3	5	y	0.00	0.0	5	0;0	5	n	0.12	1.0	7	1;1	7	n	0.00	0.0	2	0;0	2	n	0.09	0.5	5	0;1	5	n	0.00	0.0	2	0;0	2	n	0.00	0.0	3	0;0	3	n	0.27	1.5	4	2;1	4	n	0.09	0.5	5	1;0	5	n	0.17	1.0	5	1;1	5	n	ENSMUSG00000037652.16	Phc3	chr3	protein_coding	polyhomeotic 3
known_NIR_12159	chr3	30986041;30990169	30990101;30990434	-	30986041	30990434	cassetteExon	ENSMUST00000168645.8	known	0.09	0.5	5	1;0	5	n	1.00	0.5	0	0;1	0	n	0.23	1.5	5	3;0	5	n	0.00	0.0	5	0;0	5	n	0.18	1.5	7	1;2	7	n	0.00	0.0	2	0;0	2	n	0.00	0.0	5	0;0	5	n	0.00	0.0	2	0;0	2	n	0.00	0.0	3	0;0	3	n	0.43	3.0	4	2;4	4	y	0.09	0.5	5	1;0	5	n	0.09	0.5	5	1;0	5	n	ENSMUSG00000037652.16	Phc3	chr3	protein_coding	polyhomeotic 3
known_NIR_12160	chr3	31167789	31170965	+	31167651	31170965	A5SS	ENSMUST00000118470.8	known	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.26	12	35	12	35	y	0.15	3	17	3	17	y	0.11	2	16	2	16	y	0.00	0	12	0	12	n	0.14	2	12	2	12	y	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.25	3	9	3	9	y	0.25	2	6	2	6	n	0.33	3	6	3	6	n	ENSMUSG00000027660.17	Skil	chr3	protein_coding	SKI-like
known_NIR_12161	chr3	32490564	32491267	+	32490706	32491267	A5SS	ENSMUST00000108243.8	known	0.00	0	26	0	26	n	0.00	0	10	0	10	n	0.00	0	30	0	30	n	0.08	2	22	2	22	y	0.00	0	38	0	38	n	0.00	0	16	0	16	n	0.00	0	30	0	30	n	0.00	0	18	0	18	n	0.00	0	23	0	23	n	0.00	0	23	0	23	n	0.08	2	24	2	24	y	0.03	1	29	1	29	n	ENSMUSG00000027665.14	Pik3ca	chr3	protein_coding	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha
known_NIR_12162	chr3	32564881	32567150	+	32564738	32567150	A5SS	ENSMUST00000193287.6	known	1.00	10	0	10	0	n	0.80	4	1	4	1	n	0.70	7	3	7	3	y	0.67	6	3	6	3	n	0.95	21	1	21	1	n	0.92	12	1	12	1	n	1.00	13	0	13	0	n	1.00	16	0	16	0	n	0.81	13	3	13	3	y	0.65	15	8	15	8	y	0.71	5	2	5	2	n	0.83	24	5	24	5	y	ENSMUSG00000027667.14	Zfp639	chr3	protein_coding	zinc finger protein 639
known_NIR_12163	chr3	32564881	32567189	+	32564881	32567150	A3SS	ENSMUST00000191783.6	known	0.00	0	10	0	10	n	0.33	2	4	2	4	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	21	0	21	n	0.00	0	12	0	12	n	0.13	2	13	2	13	y	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.00	0	24	0	24	n	ENSMUSG00000027667.14	Zfp639	chr3	protein_coding	zinc finger protein 639
known_NIR_12164	chr3	32568603	32571178	+	32568603	32569433	A3SS	ENSMUST00000194126.6	known	0.19	6	26	6	26	y	0.09	2	20	2	20	y	0.00	0	43	0	43	n	0.05	1	18	1	18	n	0.10	5	43	5	43	y	0.00	0	17	0	17	n	0.09	3	32	3	32	y	0.17	4	20	4	20	y	0.05	1	21	1	21	n	0.28	8	21	8	21	y	0.35	6	11	6	11	y	0.13	4	26	4	26	y	ENSMUSG00000027667.14	Zfp639	chr3	protein_coding	zinc finger protein 639
known_NIR_12165	chr3	32568603	32571178	+	32568603;32569501	32569433;32571178	ES	ENSMUST00000193287.6	known	0.19	6	25.0	6	26;24	y	0.09	2	21.5	2	20;23	y	0.00	0	40.5	0	43;38	n	0.05	1	21.0	1	18;24	n	0.11	5	38.5	5	43;34	y	0.00	0	19.0	0	17;21	n	0.10	3	26.5	3	32;21	y	0.17	4	19.5	4	20;19	y	0.05	1	19.5	1	21;18	n	0.24	8	25.5	8	21;30	y	0.29	6	14.5	6	11;18	y	0.13	4	26.5	4	26;27	y	ENSMUSG00000027667.14	Zfp639	chr3	protein_coding	zinc finger protein 639
known_NIR_12166	chr3	32568603	32571178	+	32569501	32571178	5pMXE	ENSMUST00000029203.13	known	0.20	6	24	6	24	y	0.08	2	23	2	23	y	0.00	0	38	0	38	n	0.04	1	24	1	24	n	0.13	5	34	5	34	y	0.00	0	21	0	21	n	0.12	3	21	3	21	y	0.17	4	19	4	19	y	0.05	1	18	1	18	n	0.21	8	30	8	30	y	0.25	6	18	6	18	y	0.13	4	27	4	27	y	ENSMUSG00000027667.14	Zfp639	chr3	protein_coding	zinc finger protein 639
known_NIR_12167	chr3	32763491	32766017	+	32763029	32766017	A5SS	ENSMUST00000029214.14	known	0.17	7	33	7	33	y	0.00	0	38	0	38	n	0.09	4	42	4	42	y	0.07	5	66	5	66	y	0.00	0	44	0	44	n	0.06	2	31	2	31	y	0.04	2	48	2	48	y	0.00	0	23	0	23	n	0.03	1	37	1	37	n	0.05	3	54	3	54	y	0.02	1	41	1	41	n	0.07	4	52	4	52	y	ENSMUSG00000027671.15	Actl6a	chr3	protein_coding	actin-like 6A
known_NIR_12168	chr3	32785405	32786707	-	32785405	32787738	A5SS	ENSMUST00000043966.8	known	0.00	0	44	0	44	n	0.00	0	28	0	28	n	0.00	0	39	0	39	n	0.03	1	38	1	38	n	0.00	0	54	0	54	n	0.00	0	23	0	23	n	0.00	0	46	0	46	n	0.00	0	33	0	33	n	0.02	1	40	1	40	n	0.01	1	72	1	72	n	0.02	1	56	1	56	n	0.03	2	62	2	62	y	ENSMUSG00000037531.9	Mrpl47	chr3	protein_coding	mitochondrial ribosomal protein L47
known_NIR_12169	chr3	32791379	32799003	+	32791354	32799003	A5SS	ENSMUST00000127477.8	known	0.01	3	453	3	453	y	0.01	5	409	5	409	y	0.00	1	309	1	309	n	0.01	6	457	6	457	y	0.01	7	476	7	476	y	0.00	0	220	0	220	n	0.01	8	562	8	562	y	0.00	0	197	0	197	n	0.03	10	386	10	386	y	0.01	5	603	5	603	y	0.01	3	546	3	546	y	0.01	7	569	7	569	y	ENSMUSG00000027673.13	Ndufb5	chr3	protein_coding	NADH:ubiquinone oxidoreductase subunit B5
known_NIR_12170	chr3	33854585	33855105	+	33854823	33855105	A5SS	ENSMUST00000200271.5	known	1.00	12	0	12	0	n	1.00	10	0	10	0	n	0.80	4	1	4	1	n	0.71	10	4	10	4	y	0.81	25	6	25	6	y	0.93	14	1	14	1	n	0.94	16	1	16	1	n	0.92	11	1	11	1	n	1.00	16	0	16	0	n	0.85	11	2	11	2	y	0.85	11	2	11	2	y	1.00	18	0	18	0	n	ENSMUSG00000027677.18	Ttc14	chr3	protein_coding	tetratricopeptide repeat domain 14
known_NIR_12171	chr3	33857353	33858149	+	33857353;33857754	33857599;33858149	ES	ENSMUST00000099153.10	known	0.06	2	33.5	2	37;30	y	0.00	0	20.0	0	20;20	n	0.10	3	27.0	3	21;33	y	0.15	4	23.0	4	26;20	y	0.12	5	35.5	5	36;35	y	0.07	1	13.0	1	15;11	n	0.09	3	31.0	3	26;36	y	0.15	4	22.5	4	29;16	y	0.03	1	31.5	1	39;24	n	0.15	4	23.0	4	22;24	y	0.05	1	19.5	1	19;20	n	0.00	0	29.0	0	32;26	n	ENSMUSG00000027677.18	Ttc14	chr3	protein_coding	tetratricopeptide repeat domain 14
known_NIR_12172	chr3	33861082	33862005	+	33861082	33861988	A3SS	ENSMUST00000198529.5	known	0.17	3	15	3	15	y	0.12	1	7	1	7	n	0.22	4	14	4	14	y	0.06	1	15	1	15	n	0.33	6	12	6	12	y	0.33	2	4	2	4	n	0.38	6	10	6	10	y	0.18	2	9	2	9	y	0.42	5	7	5	7	y	0.12	2	14	2	14	y	0.10	1	9	1	9	n	0.38	9	15	9	15	y	ENSMUSG00000027677.18	Ttc14	chr3	protein_coding	tetratricopeptide repeat domain 14
known_NIR_12173	chr3	33861574	33861988	+	33861082	33861988	A5SS	ENSMUST00000198529.5	known	0.32	7	15	7	15	y	0.30	3	7	3	7	y	0.30	6	14	6	14	y	0.21	4	15	4	15	y	0.25	4	12	4	12	y	0.00	0	4	0	4	n	0.58	14	10	14	10	y	0.25	3	9	3	9	y	0.36	4	7	4	7	y	0.18	3	14	3	14	y	0.00	0	9	0	9	n	0.29	6	15	6	15	y	ENSMUSG00000027677.18	Ttc14	chr3	protein_coding	tetratricopeptide repeat domain 14
known_NIR_12174	chr3	34118468	34119123	+	34118468	34123066	A3SS	ENSMUST00000167354.8	known	0.00	0	104	0	104	n	0.00	0	94	0	94	n	0.00	0	141	0	141	n	0.00	0	82	0	82	n	0.00	0	119	0	119	n	0.00	0	55	0	55	n	0.22	37	133	37	133	y	0.00	0	56	0	56	n	0.00	0	85	0	85	n	0.00	0	123	0	123	n	0.00	0	93	0	93	n	0.00	0	110	0	110	n	ENSMUSG00000027680.16	Fxr1	chr3	protein_coding	fragile X mental retardation gene 1, autosomal homolog
known_NIR_12175	chr3	34118468	34122310	+	34118468;34119203	34119123;34122310	ES	ENSMUST00000001620.13	known	1.00	38	0.0	38	0;0	n	1.00	39	0.0	39	0;0	n	1.00	48	0.0	48	0;0	n	1.00	38	0.0	38	0;0	n	1.00	45	0.0	45	0;0	n	1.00	15	0.0	15	0;0	n	0.57	40	30.5	40	37;24	y	1.00	23	0.0	23	0;0	n	1.00	30	0.0	30	0;0	n	1.00	40	0.0	40	0;0	n	0.99	43	0.5	43	0;1	n	1.00	35	0.0	35	0;0	n	ENSMUSG00000027680.16	Fxr1	chr3	protein_coding	fragile X mental retardation gene 1, autosomal homolog
known_NIR_12176	chr3	34118468;34122401	34122310;34123066	+	34118468	34123066	cassetteExon	ENSMUST00000167354.8	known	0.28	40.0	104	38;42	104	y	0.26	33.0	94	39;27	94	y	0.25	47.0	141	48;46	141	y	0.33	39.5	82	38;41	82	y	0.31	52.5	119	45;60	119	y	0.20	14.0	55	15;13	55	y	0.36	75.0	133	40;110	133	y	0.27	21.0	56	23;19	56	y	0.24	26.5	85	30;23	85	y	0.26	42.5	123	40;45	123	y	0.34	47.0	93	43;51	93	y	0.27	41.0	110	35;47	110	y	ENSMUSG00000027680.16	Fxr1	chr3	protein_coding	fragile X mental retardation gene 1, autosomal homolog
known_NIR_12177	chr3	34131673	34132924	-	34112263	34132924	A3SS	ENSMUST00000011029.12	known	0.93	257	19	257	19	y	0.98	284	6	284	6	y	0.97	222	6	222	6	y	0.95	255	14	255	14	y	0.95	321	16	321	16	y	0.96	138	6	138	6	y	0.96	339	13	339	13	y	0.94	148	10	148	10	y	0.96	268	12	268	12	y	0.92	353	30	353	30	y	0.96	328	14	328	14	y	0.95	274	14	274	14	y	ENSMUSG00000027679.14	Dnajc19	chr3	protein_coding	DnaJ heat shock protein family (Hsp40) member C19
known_NIR_12178	chr3	34134306	34135335	-	34134306;34134431	34134380;34135335	ES	ENSMUST00000011029.12	known	0.00	0	208.0	0	241;175	n	0.00	0	236.0	0	275;197	n	0.00	0	209.5	0	234;185	n	0.00	0	242.0	0	274;210	n	0.00	0	297.5	0	336;259	n	0.00	0	136.0	0	152;120	n	0.01	2	284.0	2	323;245	y	0.00	0	144.0	0	146;142	n	0.02	3	195.5	3	222;169	y	0.00	0	322.0	0	375;269	n	0.00	1	264.0	1	298;230	n	0.00	0	250.5	0	283;218	n	ENSMUSG00000027679.14	Dnajc19	chr3	protein_coding	DnaJ heat shock protein family (Hsp40) member C19
known_NIR_12179	chr3	35882852	35885515	+	35882852	35883566	3pMXE	ENSMUST00000200445.5	known	0.98	47	1	47	1	n	1.00	29	0	29	0	n	0.98	65	1	65	1	n	0.95	60	3	60	3	y	0.94	77	5	77	5	y	0.94	33	2	33	2	y	0.97	63	2	63	2	y	0.93	40	3	40	3	y	1.00	54	0	54	0	n	0.99	71	1	71	1	n	0.93	56	4	56	4	y	0.98	102	2	102	2	y	ENSMUSG00000037400.18	Atp11b	chr3	protein_coding	ATPase, class VI, type 11B
known_NIR_12180	chr3	35952024	35970369	-	35963428	35970369	3pMXE	ENSMUST00000196263.5	known	0.99	108	1	108	1	n	0.98	90	2	90	2	y	0.97	160	5	160	5	y	0.98	161	3	161	3	y	0.99	174	2	174	2	y	0.96	53	2	53	2	y	1.00	154	0	154	0	n	0.99	84	1	84	1	n	1.00	93	0	93	0	n	0.98	162	3	162	3	y	0.97	116	3	116	3	y	0.99	147	2	147	2	y	ENSMUSG00000027708.15	Dcun1d1	chr3	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)
known_NIR_12181	chr3	35952024	35973150	-	35952024	35970369	A5SS&ES	ENSMUST00000197489.5	known	0.09	11	108	11	108	y	0.06	6	90	6	90	y	0.04	6	160	6	160	y	0.03	5	161	5	161	y	0.05	10	174	10	174	y	0.04	2	53	2	53	y	0.06	10	154	10	154	y	0.02	2	84	2	84	y	0.11	12	93	12	93	y	0.08	15	162	15	162	y	0.03	4	116	4	116	y	0.06	9	147	9	147	y	ENSMUSG00000027708.15	Dcun1d1	chr3	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)
known_NIR_12182	chr3	35952024	35973150	-	35952024;35970499	35970369;35973150	ES	ENSMUST00000178098.8	known	0.09	11	109.0	11	108;110	y	0.06	6	91.0	6	90;92	y	0.04	6	147.5	6	160;135	y	0.03	5	140.5	5	161;120	y	0.05	10	173.0	10	174;172	y	0.03	2	60.0	2	53;67	y	0.06	10	150.5	10	154;147	y	0.02	2	84.5	2	84;85	y	0.12	12	91.0	12	93;89	y	0.08	15	169.0	15	162;176	y	0.04	4	105.0	4	116;94	y	0.06	9	140.5	9	147;134	y	ENSMUSG00000027708.15	Dcun1d1	chr3	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)
known_NIR_12183	chr3	35952024	35973150	-	35970499	35973150	3pMXE	ENSMUST00000196115.2	known	0.09	11	110	11	110	y	0.06	6	92	6	92	y	0.04	6	135	6	135	y	0.04	5	120	5	120	y	0.05	10	172	10	172	y	0.03	2	67	2	67	y	0.06	10	147	10	147	y	0.02	2	85	2	85	y	0.12	12	89	12	89	y	0.08	15	176	15	176	y	0.04	4	94	4	94	y	0.06	9	134	9	134	y	ENSMUSG00000027708.15	Dcun1d1	chr3	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)
known_NIR_12184	chr3	35973318	35975262	-	35973318	35975120	A5SS	ENSMUST00000178098.8	known	0.02	2	126	2	126	y	0.00	0	101	0	101	n	0.01	2	145	2	145	y	0.01	1	110	1	110	n	0.00	0	175	0	175	n	0.03	2	67	2	67	y	0.01	2	160	2	160	y	0.00	0	83	0	83	n	0.01	1	90	1	90	n	0.01	2	157	2	157	y	0.00	0	108	0	108	n	0.00	0	145	0	145	n	ENSMUSG00000027708.15	Dcun1d1	chr3	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)
known_NIR_12185	chr3	35975336	35984070	-	35975336	35986342	A5SS	ENSMUST00000178098.8	known	0.10	1	9	1	9	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.17	3	15	3	15	y	0.00	0	2	0	2	n	0.06	1	15	1	15	n	0.50	1	1	1	1	n	0.06	1	17	1	17	n	0.15	4	23	4	23	y	0.00	0	14	0	14	n	0.00	0	21	0	21	n	ENSMUSG00000027708.15	Dcun1d1	chr3	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)
known_NIR_12186	chr3	35975336	35984070	-	35975336	35986934	A5SS	ENSMUST00000108182.10	known	0.03	1	34	1	34	n	0.00	0	19	0	19	n	0.00	0	72	0	72	n	0.00	0	76	0	76	n	0.04	3	70	3	70	y	0.00	0	25	0	25	n	0.02	1	63	1	63	n	0.03	1	37	1	37	n	0.02	1	42	1	42	n	0.06	4	64	4	64	y	0.00	0	46	0	46	n	0.00	0	50	0	50	n	ENSMUSG00000027708.15	Dcun1d1	chr3	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)
known_NIR_12187	chr3	35975336	35984095	-	35975336	35986342	A5SS	ENSMUST00000178098.8	known	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	15	0	15	n	0.00	0	2	0	2	n	0.00	0	15	0	15	n	0.00	0	1	0	1	n	0.00	0	17	0	17	n	0.08	2	23	2	23	y	0.00	0	14	0	14	n	0.00	0	21	0	21	n	ENSMUSG00000027708.15	Dcun1d1	chr3	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)
known_NIR_12188	chr3	35975336	35984095	-	35975336	35986934	A5SS	ENSMUST00000108182.10	known	0.00	0	34	0	34	n	0.00	0	19	0	19	n	0.00	0	72	0	72	n	0.00	0	76	0	76	n	0.00	0	70	0	70	n	0.00	0	25	0	25	n	0.00	0	63	0	63	n	0.00	0	37	0	37	n	0.00	0	42	0	42	n	0.03	2	64	2	64	y	0.00	0	46	0	46	n	0.00	0	50	0	50	n	ENSMUSG00000027708.15	Dcun1d1	chr3	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)
known_NIR_12189	chr3	35975336	35986934	-	35975336	35986342	5pMXE	ENSMUST00000178098.8	known	0.79	34	9	34	9	y	0.73	19	7	19	7	y	0.88	72	10	72	10	y	0.84	76	14	76	14	y	0.82	70	15	70	15	y	0.93	25	2	25	2	y	0.81	63	15	63	15	y	0.97	37	1	37	1	n	0.71	42	17	42	17	y	0.74	64	23	64	23	y	0.77	46	14	46	14	y	0.70	50	21	50	21	y	ENSMUSG00000027708.15	Dcun1d1	chr3	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)
known_NIR_12190	chr3	36139691	36141909	+	36139691	36141869	A3SS	ENSMUST00000011492.15	known	0.00	0	55	0	55	n	0.02	1	42	1	42	n	0.00	0	37	0	37	n	0.02	1	60	1	60	n	0.02	1	65	1	65	n	0.00	0	37	0	37	n	0.00	0	68	0	68	n	0.00	0	24	0	24	n	0.00	0	51	0	51	n	0.01	1	79	1	79	n	0.00	0	58	0	58	n	0.07	3	42	3	42	y	ENSMUSG00000027710.15	Acad9	chr3	protein_coding	acyl-Coenzyme A dehydrogenase family, member 9
known_NIR_12191	chr3	37003361	37004032	+	37003361	37004035	A3SS	ENSMUST00000057272.15	known	1.00	2	0	2	0	n	1.00	2	0	2	0	n	0.20	2	8	2	8	y	1.00	2	0	2	0	n	0.60	3	2	3	2	n	0.33	1	2	1	2	n	0.25	1	3	1	3	n	1.00	3	0	3	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.75	3	1	3	1	n	0.71	5	2	5	2	n	ENSMUSG00000037270.19	4932438A13Rik	chr3	protein_coding	RIKEN cDNA 4932438A13 gene
known_NIR_12192	chr3	37065943;37066834	37066634;37067029	+	37065943	37067029	cassetteExon	ENSMUST00000057272.15	known	0.94	16.0	1	13;19	1	n	1.00	6.5	0	1;12	0	n	0.86	37.5	6	33;42	6	y	1.00	17.5	0	14;21	0	n	0.95	41.0	2	35;47	2	y	0.89	15.5	2	15;16	2	y	0.91	21.5	2	22;21	2	y	0.93	25.5	2	24;27	2	y	1.00	18.0	0	14;22	0	n	0.89	24.0	3	17;31	3	y	0.89	15.5	2	13;18	2	y	1.00	24.5	0	22;27	0	n	ENSMUSG00000037270.19	4932438A13Rik	chr3	protein_coding	RIKEN cDNA 4932438A13 gene
known_NIR_12193	chr3	37076623	37080380	+	37076623	37077119	A3SS&ES	ENSMUST00000146948.8	known	0.15	2	11	2	11	y	0.00	0	9	0	9	n	0.00	0	30	0	30	n	0.00	0	20	0	20	n	0.00	0	61	0	61	n	0.00	0	17	0	17	n	0.00	0	31	0	31	n	0.03	1	33	1	33	n	0.00	0	14	0	14	n	0.03	1	34	1	34	n	0.12	1	7	1	7	n	0.00	0	27	0	27	n	ENSMUSG00000037270.19	4932438A13Rik	chr3	protein_coding	RIKEN cDNA 4932438A13 gene
known_NIR_12194	chr3	37076623;37077181	37077119;37080239	+	37076623	37080239	cassetteExon	ENSMUST00000057272.15	known	1.00	13.5	0	11;16	0	n	0.90	9.5	1	9;10	1	n	0.83	28.5	6	30;27	6	y	0.89	16.0	2	20;12	2	y	0.86	48.0	8	61;35	8	y	0.83	19.5	4	17;22	4	y	0.84	25.5	5	31;20	5	y	0.96	26.0	1	33;19	1	n	0.88	14.5	2	14;15	2	y	0.94	31.0	2	34;28	2	y	1.00	9.0	0	7;11	0	n	0.83	25.0	5	27;23	5	y	ENSMUSG00000037270.19	4932438A13Rik	chr3	protein_coding	RIKEN cDNA 4932438A13 gene
known_NIR_12195	chr3	37084792	37086514	+	37084897	37086514	A5SS	ENSMUST00000057272.15	known	1.00	19	0	19	0	n	0.93	14	1	14	1	n	0.85	39	7	39	7	y	0.94	30	2	30	2	y	0.91	50	5	50	5	y	1.00	27	0	27	0	n	0.96	44	2	44	2	y	0.88	28	4	28	4	y	0.86	18	3	18	3	y	0.97	33	1	33	1	n	0.88	21	3	21	3	y	0.88	44	6	44	6	y	ENSMUSG00000037270.19	4932438A13Rik	chr3	protein_coding	RIKEN cDNA 4932438A13 gene
known_NIR_12196	chr3	37459640	37463657	-	37459643	37463657	A3SS	ENSMUST00000108118.9	known	0.14	6	38	6	38	y	0.21	6	22	6	22	y	0.12	5	37	5	37	y	0.14	4	24	4	24	y	0.21	7	26	7	26	y	0.17	5	25	5	25	y	0.21	10	37	10	37	y	0.20	5	20	5	20	y	0.23	5	17	5	17	y	0.27	15	40	15	40	y	0.38	19	31	19	31	y	0.23	10	34	10	34	y	ENSMUSG00000050174.16	Nudt6	chr3	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 6
known_NIR_12197	chr3	37466564;37469841	37469800;37470850	-	37466564	37470850	cassetteExon	ENSMUST00000052645.13	known	0.11	2.5	20	3;2	20	y	0.24	6.0	19	5;7	19	y	0.22	7.5	27	9;6	27	y	0.33	7.0	14	8;6	14	y	0.27	9.0	24	11;7	24	y	0.29	6.0	15	5;7	15	y	0.31	13.0	29	14;12	29	y	0.38	6.0	10	5;7	10	y	0.50	10.0	10	7;13	10	y	0.27	15.0	41	18;12	41	y	0.42	11.5	16	10;13	16	y	0.40	11.5	17	10;13	17	y	ENSMUSG00000050174.16	Nudt6	chr3	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 6
known_NIR_12198	chr3	37471053	37473972	-	37471053	37473491	5pMXE	ENSMUST00000052645.13	known	0.06	1	16	1	16	n	0.00	0	17	0	17	n	0.00	0	28	0	28	n	0.04	1	25	1	25	n	0.03	1	30	1	30	n	0.00	0	40	0	40	n	0.00	0	43	0	43	n	0.00	0	15	0	15	n	0.10	3	27	3	27	y	0.00	0	22	0	22	n	0.00	0	38	0	38	n	0.00	0	33	0	33	n	ENSMUSG00000050174.16	Nudt6	chr3	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 6
known_NIR_12199	chr3	38506654	38508190	-	38506654	38517049	A5SS	ENSMUST00000120875.8	known	1.00	8	0	8	0	n	0.73	8	3	8	3	y	0.78	21	6	21	6	y	1.00	8	0	8	0	n	0.81	13	3	13	3	y	0.67	4	2	4	2	n	0.83	5	1	5	1	n	0.86	6	1	6	1	n	1.00	3	0	3	0	n	0.67	8	4	8	4	y	0.69	9	4	9	4	y	0.33	2	4	2	4	n	ENSMUSG00000044864.17	Ankrd50	chr3	protein_coding	ankyrin repeat domain 50
known_NIR_12200	chr3	38506654	38517049	-	38506654;38511734	38508190;38517049	ES	ENSMUST00000156038.2	known	0.00	0	6.0	0	8;4	n	0.40	3	4.5	3	8;1	n	0.30	6	14.0	6	21;7	y	0.00	0	6.0	0	8;4	n	0.21	3	11.5	3	13;10	y	0.44	2	2.5	2	4;1	n	0.15	1	5.5	1	5;6	n	0.20	1	4.0	1	6;2	n	0.00	0	3.5	0	3;4	n	0.35	4	7.5	4	8;7	y	0.32	4	8.5	4	9;8	y	0.53	4	3.5	4	2;5	y	ENSMUSG00000044864.17	Ankrd50	chr3	protein_coding	ankyrin repeat domain 50
known_NIR_12201	chr3	38511734	38517049	-	38506654	38517049	A3SS	ENSMUST00000120875.8	known	1.00	4	0	4	0	n	0.25	1	3	1	3	n	0.54	7	6	7	6	y	1.00	4	0	4	0	n	0.77	10	3	10	3	y	0.33	1	2	1	2	n	0.86	6	1	6	1	n	0.67	2	1	2	1	n	1.00	4	0	4	0	n	0.64	7	4	7	4	y	0.67	8	4	8	4	y	0.56	5	4	5	4	n	ENSMUSG00000044864.17	Ankrd50	chr3	protein_coding	ankyrin repeat domain 50
known_NIR_12202	chr3	40789740	40791524	-	40789844	40791524	A3SS	ENSMUST00000026859.11	known	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	23	0	23	n	0.08	2	22	2	22	y	0.00	0	22	0	22	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.18	4	18	4	18	y	0.00	0	16	0	16	n	0.24	4	13	4	13	y	ENSMUSG00000025759.12	Mfsd8	chr3	protein_coding	major facilitator superfamily domain containing 8
known_NIR_12203	chr3	40860391;40860653	40860602;40864938	+	40860391	40864938	cassetteExon	ENSMUST00000108078.9	known	0.02	0.5	23	1;0	23	n	0.00	0.0	15	0;0	15	n	0.12	2.0	14	0;4	14	n	0.01	0.5	34	1;0	34	n	0.05	2.0	36	2;2	36	y	0.00	0.0	11	0;0	11	n	0.03	1.0	34	2;0	34	n	0.06	1.0	15	2;0	15	n	0.00	0.0	22	0;0	22	n	0.09	3.0	32	2;4	32	y	0.14	4.0	24	3;5	24	y	0.04	1.5	32	0;3	32	n	ENSMUSG00000037818.17	Abhd18	chr3	protein_coding	abhydrolase domain containing 18
known_NIR_12204	chr3	40905385	40916043	+	40905119	40916043	A5SS	ENSMUST00000048490.13	known	0.11	14	109	14	109	y	0.10	8	75	8	75	y	0.16	21	114	21	114	y	0.15	21	122	21	122	y	0.22	49	173	49	173	y	0.23	21	70	21	70	y	0.10	13	120	13	120	y	0.18	14	65	14	65	y	0.17	11	54	11	54	y	0.07	10	137	10	137	y	0.07	8	102	8	102	y	0.10	17	157	17	157	y	ENSMUSG00000025762.17	Larp1b	chr3	protein_coding	La ribonucleoprotein domain family, member 1B
known_NIR_12205	chr3	40916101	40918403	+	40916101;40916663	40916604;40918403	ES	ENSMUST00000048490.13	known	0.00	0	174.5	0	168;181	n	0.00	0	104.0	0	87;121	n	0.01	2	175.0	2	179;171	y	0.01	2	172.0	2	160;184	y	0.00	0	226.0	0	220;232	n	0.00	0	96.5	0	92;101	n	0.00	0	170.5	0	169;172	n	0.00	0	108.0	0	102;114	n	0.00	0	120.5	0	111;130	n	0.00	0	192.0	0	194;190	n	0.00	0	152.5	0	133;172	n	0.01	2	222.0	2	206;238	y	ENSMUSG00000025762.17	Larp1b	chr3	protein_coding	La ribonucleoprotein domain family, member 1B
known_NIR_12206	chr3	40916223	40916604	+	40916101	40916604	A5SS	ENSMUST00000048490.13	known	0.03	5	168	5	168	y	0.03	3	87	3	87	y	0.04	7	179	7	179	y	0.04	6	160	6	160	y	0.06	14	220	14	220	y	0.02	2	92	2	92	y	0.03	6	169	6	169	y	0.09	10	102	10	102	y	0.02	2	111	2	111	y	0.06	12	194	12	194	y	0.05	7	133	7	133	y	0.04	8	206	8	206	y	ENSMUSG00000025762.17	Larp1b	chr3	protein_coding	La ribonucleoprotein domain family, member 1B
known_NIR_12207	chr3	40918577	40924326	+	40918577;40921940	40921800;40924326	ES	ENSMUST00000048490.13	known	0.01	3	224.5	3	212;237	y	0.01	1	196.0	1	189;203	n	0.04	13	295.0	13	247;343	y	0.00	0	262.0	0	222;302	n	0.02	6	320.5	6	290;351	y	0.00	0	148.5	0	138;159	n	0.01	2	301.5	2	291;312	y	0.00	0	160.5	0	150;171	n	0.00	1	233.0	1	216;250	n	0.01	2	339.0	2	293;385	y	0.00	0	246.5	0	228;265	n	0.01	3	327.5	3	284;371	y	ENSMUSG00000025762.17	Larp1b	chr3	protein_coding	La ribonucleoprotein domain family, member 1B
known_NIR_12208	chr3	41518351	41535630	+	41518001	41535630	A5SS	ENSMUST00000163764.8	known	1.00	7	0	7	0	n	0.88	7	1	7	1	n	0.36	4	7	4	7	y	0.59	10	7	10	7	y	0.54	13	11	13	11	y	0.68	15	7	15	7	y	0.36	4	7	4	7	y	0.70	7	3	7	3	y	0.45	5	6	5	6	y	0.59	17	12	17	12	y	0.50	4	4	4	4	n	0.44	8	10	8	10	y	ENSMUSG00000025764.15	Jade1	chr3	protein_coding	jade family PHD finger 1
known_NIR_12209	chr3	41703168;41708358	41708024;41710484	+	41703168	41710484	cassetteExon	ENSMUST00000192193.6	known	0.86	6.0	1	4;8	1	n	1.00	5.0	0	3;7	0	n	1.00	4.5	0	3;6	0	n	1.00	12.5	0	6;19	0	n	0.89	8.5	1	9;8	1	n	0.75	3.0	1	2;4	1	n	0.91	10.5	1	2;19	1	n	0.86	6.0	1	5;7	1	n	0.80	8.0	2	5;11	2	y	1.00	9.5	0	3;16	0	n	0.87	13.5	2	7;20	2	y	1.00	12.5	0	11;14	0	n	ENSMUSG00000025766.15	D3Ertd751e	chr3	protein_coding	DNA segment, Chr 3, ERATO Doi 751, expressed
known_NIR_12210	chr3	51151273	51155226	+	51132708	51155226	A5SS	ENSMUST00000023849.15	known	0.12	5	35	5	35	y	0.03	1	31	1	31	n	0.00	0	14	0	14	n	0.13	4	27	4	27	y	0.00	0	17	0	17	n	0.00	0	4	0	4	n	0.09	1	10	1	10	n	0.50	3	3	3	3	n	0.12	1	7	1	7	n	0.06	2	34	2	34	y	0.23	3	10	3	10	y	0.13	3	20	3	20	y	ENSMUSG00000023087.16	Noct	chr3	protein_coding	nocturnin
known_NIR_12211	chr3	51172427	51174174	-	51172463	51174174	A3SS	ENSMUST00000194641.6	known	0.61	14	9	14	9	y	1.00	13	0	13	0	n	0.78	40	11	40	11	y	0.71	29	12	29	12	y	0.77	36	11	36	11	y	0.81	21	5	21	5	y	0.83	44	9	44	9	y	0.76	19	6	19	6	y	0.68	15	7	15	7	y	0.75	40	13	40	13	y	0.46	11	13	11	13	y	0.84	43	8	43	8	y	ENSMUSG00000037174.19	Elf2	chr3	protein_coding	E74-like factor 2
known_NIR_12212	chr3	51172427;51173466	51173234;51174174	-	51172427	51174174	cassetteExon	ENSMUST00000062009.14	known	0.03	0.5	14	1;0	14	n	0.10	1.5	13	2;1	13	n	0.14	6.5	40	3;10	40	y	0.06	2.0	29	0;4	29	n	0.08	3.0	36	0;6	36	n	0.02	0.5	21	0;1	21	n	0.04	2.0	44	0;4	44	n	0.05	1.0	19	2;0	19	n	0.09	1.5	15	0;3	15	n	0.05	2.0	40	0;4	40	n	0.08	1.0	11	0;2	11	n	0.05	2.5	43	3;2	43	y	ENSMUSG00000037174.19	Elf2	chr3	protein_coding	E74-like factor 2
known_NIR_12213	chr3	51173466	51174174	-	51172463	51174174	A3SS	ENSMUST00000194641.6	known	0.00	0	9	0	9	n	1.00	1	0	1	0	n	0.48	10	11	10	11	y	0.25	4	12	4	12	y	0.35	6	11	6	11	y	0.17	1	5	1	5	n	0.31	4	9	4	9	y	0.00	0	6	0	6	n	0.30	3	7	3	7	y	0.24	4	13	4	13	y	0.13	2	13	2	13	y	0.20	2	8	2	8	y	ENSMUSG00000037174.19	Elf2	chr3	protein_coding	E74-like factor 2
known_NIR_12214	chr3	51174287	51184626	-	51174287	51201514	A5SS	ENSMUST00000183463.8	known	1.00	9	0	9	0	n	1.00	8	0	8	0	n	1.00	25	0	25	0	n	0.86	12	2	12	2	y	1.00	12	0	12	0	n	1.00	15	0	15	0	n	1.00	17	0	17	0	n	1.00	9	0	9	0	n	1.00	7	0	7	0	n	1.00	19	0	19	0	n	1.00	10	0	10	0	n	1.00	24	0	24	0	n	ENSMUSG00000037174.19	Elf2	chr3	protein_coding	E74-like factor 2
known_NIR_12215	chr3	51174287	51184626	-	51174287	51215471	A5SS	ENSMUST00000194641.6	known	0.28	9	23	9	23	y	0.35	8	15	8	15	y	0.36	25	45	25	45	y	0.26	12	35	12	35	y	0.19	12	51	12	51	y	0.48	15	16	15	16	y	0.25	17	51	17	51	y	0.24	9	29	9	29	y	0.19	7	29	7	29	y	0.36	19	34	19	34	y	0.29	10	25	10	25	y	0.35	24	44	24	44	y	ENSMUSG00000037174.19	Elf2	chr3	protein_coding	E74-like factor 2
known_NIR_12216	chr3	51174287	51207204	-	51174287	51184626	5pMXE	ENSMUST00000091144.11	known	0.00	0	9	0	9	n	0.11	1	8	1	8	n	0.04	1	25	1	25	n	0.25	4	12	4	12	y	0.14	2	12	2	12	y	0.12	2	15	2	15	y	0.06	1	17	1	17	n	0.10	1	9	1	9	n	0.00	0	7	0	7	n	0.17	4	19	4	19	y	0.29	4	10	4	10	y	0.04	1	24	1	24	n	ENSMUSG00000037174.19	Elf2	chr3	protein_coding	E74-like factor 2
known_NIR_12217	chr3	51174287;51201609	51201514;51215471	-	51174287	51215471	cassetteExon	ENSMUST00000194641.6	known	0.10	2.5	23	0;5	23	n	0.03	0.5	15	0;1	15	n	0.00	0.0	45	0;0	45	n	0.05	2.0	35	2;2	35	y	0.03	1.5	51	0;3	51	n	0.03	0.5	16	0;1	16	n	0.00	0.0	51	0;0	51	n	0.06	2.0	29	0;4	29	n	0.00	0.0	29	0;0	29	n	0.00	0.0	34	0;0	34	n	0.00	0.0	25	0;0	25	n	0.01	0.5	44	0;1	44	n	ENSMUSG00000037174.19	Elf2	chr3	protein_coding	E74-like factor 2
known_NIR_12218	chr3	51174287;51207306	51207204;51215471	-	51174287	51215471	cassetteExon	ENSMUST00000194641.6	known	0.00	0.0	23	0;0	23	n	0.03	0.5	15	1;0	15	n	0.01	0.5	45	1;0	45	n	0.10	4.0	35	4;4	35	y	0.03	1.5	51	2;1	51	n	0.09	1.5	16	2;1	16	n	0.01	0.5	51	1;0	51	n	0.03	1.0	29	1;1	29	n	0.05	1.5	29	0;3	29	n	0.09	3.5	34	4;3	34	y	0.14	4.0	25	4;4	25	y	0.09	4.5	44	1;8	44	n	ENSMUSG00000037174.19	Elf2	chr3	protein_coding	E74-like factor 2
known_NIR_12219	chr3	51174287;51207306	51207204;51215471	-	51174287;51201609	51201514;51215471	MXE	ENSMUST00000183463.8	known	0.00	0.0	2.5	0;0	0;5	n	0.50	0.5	0.5	1;0	0;1	n	1.00	0.5	0.0	1;0	0;0	n	0.67	4.0	2.0	4;4	2;2	y	0.50	1.5	1.5	2;1	0;3	n	0.75	1.5	0.5	2;1	0;1	n	1.00	0.5	0.0	1;0	0;0	n	0.33	1.0	2.0	1;1	0;4	n	1.00	1.5	0.0	0;3	0;0	n	1.00	3.5	0.0	4;3	0;0	n	1.00	4.0	0.0	4;4	0;0	n	0.90	4.5	0.5	1;8	0;1	n	ENSMUSG00000037174.19	Elf2	chr3	protein_coding	E74-like factor 2
known_NIR_12220	chr3	51215636	51230643	-	51215636	51247835	A5SS	ENSMUST00000194209.2	known	1.00	25	0	25	0	n	1.00	22	0	22	0	n	1.00	50	0	50	0	n	1.00	28	0	28	0	n	0.95	41	2	41	2	y	1.00	24	0	24	0	n	1.00	34	0	34	0	n	1.00	21	0	21	0	n	1.00	18	0	18	0	n	1.00	26	0	26	0	n	0.97	28	1	28	1	n	1.00	27	0	27	0	n	ENSMUSG00000037174.19	Elf2	chr3	protein_coding	E74-like factor 2
known_NIR_12221	chr3	51233456	51247835	-	51215636	51247835	A3SS	ENSMUST00000194209.2	known	1.00	7	0	7	0	n	1.00	7	0	7	0	n	1.00	27	0	27	0	n	1.00	17	0	17	0	n	0.89	17	2	17	2	y	1.00	11	0	11	0	n	1.00	8	0	8	0	n	1.00	16	0	16	0	n	1.00	17	0	17	0	n	1.00	22	0	22	0	n	0.93	14	1	14	1	n	1.00	16	0	16	0	n	ENSMUSG00000037174.19	Elf2	chr3	protein_coding	E74-like factor 2
known_NIR_12222	chr3	51313035	51314757	-	51313040	51314757	A3SS	ENSMUST00000038108.12	known	0.00	0	508	0	508	n	0.00	0	496	0	496	n	0.00	0	461	0	461	n	0.00	0	374	0	374	n	0.00	0	549	0	549	n	0.00	0	282	0	282	n	0.00	1	639	1	639	n	0.00	1	248	1	248	n	0.00	1	422	1	422	n	0.00	0	658	0	658	n	0.00	1	572	1	572	n	0.01	4	518	4	518	y	ENSMUSG00000037152.12	Ndufc1	chr3	protein_coding	NADH:ubiquinone oxidoreductase subunit C1
known_NIR_12223	chr3	51315669	51315911	-	51315669	51316285	A5SS	ENSMUST00000038108.12	known	0.00	0	481	0	481	n	0.00	0	405	0	405	n	0.00	1	389	1	389	n	0.01	3	427	3	427	y	0.00	0	497	0	497	n	0.00	0	257	0	257	n	0.00	0	561	0	561	n	0.00	0	272	0	272	n	0.00	1	402	1	402	n	0.00	0	557	0	557	n	0.00	0	513	0	513	n	0.01	3	476	3	476	y	ENSMUSG00000037152.12	Ndufc1	chr3	protein_coding	NADH:ubiquinone oxidoreductase subunit C1
known_NIR_12224	chr3	51391533	51400777	+	51392001	51400777	A5SS	ENSMUST00000054387.8	known	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.00	0	33	0	33	n	0.00	0	11	0	11	n	0.00	0	20	0	20	n	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.18	3	14	3	14	y	0.00	0	8	0	8	n	0.00	0	18	0	18	n	0.00	0	6	0	6	n	0.05	1	20	1	20	n	ENSMUSG00000027739.10	Rab33b	chr3	protein_coding	RAB33B, member RAS oncogene family
known_NIR_12225	chr3	54600315	54600524	+	54600280	54600524	A5SS	ENSMUST00000197502.5	known	0.67	2	1	2	1	n	1.00	3	0	3	0	n	0.73	8	3	8	3	y	0.50	1	1	1	1	n	0.62	5	3	5	3	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.83	5	1	5	1	n	0.29	2	5	2	5	n	0.60	3	2	3	2	n	0.83	5	1	5	1	n	ENSMUSG00000027751.14	Supt20	chr3	protein_coding	SPT20 SAGA complex component
known_NIR_12226	chr3	54606080	54608908	+	54606080	54608911	A3SS	ENSMUST00000197502.5	known	0.37	10	17	10	17	y	0.58	7	5	7	5	y	0.47	9	10	9	10	y	0.30	7	16	7	16	y	0.40	10	15	10	15	y	0.57	12	9	12	9	y	0.47	9	10	9	10	y	0.48	11	12	11	12	y	0.35	7	13	7	13	y	0.58	14	10	14	10	y	0.33	4	8	4	8	y	0.37	11	19	11	19	y	ENSMUSG00000027751.14	Supt20	chr3	protein_coding	SPT20 SAGA complex component
known_NIR_12227	chr3	54622217	54622578	+	54622217	54622575	A3SS	ENSMUST00000197502.5	known	0.08	2	22	2	22	y	0.06	2	31	2	31	y	0.09	3	30	3	30	y	0.00	0	25	0	25	n	0.11	4	31	4	31	y	0.00	0	22	0	22	n	0.15	6	33	6	33	y	0.00	0	26	0	26	n	0.05	1	18	1	18	n	0.06	2	33	2	33	y	0.00	0	15	0	15	n	0.02	1	46	1	46	n	ENSMUSG00000027751.14	Supt20	chr3	protein_coding	SPT20 SAGA complex component
known_NIR_12228	chr3	54623110	54624059	+	54623110	54624997	A3SS	ENSMUST00000197502.5	known	0.69	9	4	9	4	y	0.93	14	1	14	1	n	0.84	16	3	16	3	y	0.89	16	2	16	2	y	0.83	19	4	19	4	y	1.00	11	0	11	0	n	0.93	14	1	14	1	n	0.83	10	2	10	2	y	0.83	5	1	5	1	n	0.77	10	3	10	3	y	0.89	8	1	8	1	n	0.94	15	1	15	1	n	ENSMUSG00000027751.14	Supt20	chr3	protein_coding	SPT20 SAGA complex component
known_NIR_12229	chr3	54627882	54629978	+	54627882	54629942	A3SS	ENSMUST00000197502.5	known	0.52	13	12	13	12	y	0.14	3	19	3	19	y	0.54	13	11	13	11	y	0.35	8	15	8	15	y	0.41	11	16	11	16	y	0.53	8	7	8	7	y	0.41	9	13	9	13	y	0.19	3	13	3	13	y	0.30	6	14	6	14	y	0.32	10	21	10	21	y	0.13	2	13	2	13	y	0.39	7	11	7	11	y	ENSMUSG00000027751.14	Supt20	chr3	protein_coding	SPT20 SAGA complex component
known_NIR_12230	chr3	54646372	54646683	+	54646374	54646683	A5SS	ENSMUST00000044567.4	known	0.02	3	142	3	142	y	0.01	2	139	2	139	y	0.02	3	175	3	175	y	0.00	0	133	0	133	n	0.01	2	241	2	241	y	0.00	0	78	0	78	n	0.01	2	186	2	186	y	0.00	0	115	0	115	n	0.00	0	114	0	114	n	0.00	0	185	0	185	n	0.02	3	133	3	133	y	0.02	3	162	3	162	y	ENSMUSG00000036632.10	Alg5	chr3	protein_coding	asparagine-linked glycosylation 5 (dolichyl-phosphate beta-glucosyltransferase)
known_NIR_12231	chr3	54712888	54714620	-	54712888	54713173	5pMXE	ENSMUST00000182246.2	known	0.97	36	1	36	1	n	0.98	43	1	43	1	n	1.00	77	0	77	0	n	1.00	43	0	43	0	n	0.95	62	3	62	3	y	0.91	30	3	30	3	y	0.93	37	3	37	3	y	0.92	23	2	23	2	y	1.00	37	0	37	0	n	0.96	49	2	49	2	y	0.95	41	2	41	2	y	0.96	55	2	55	2	y	ENSMUSG00000036615.8	Rfxap	chr3	protein_coding	regulatory factor X-associated protein
known_NIR_12232	chr3	54712888	54714620	-	54713259	54714620	3pMXE	ENSMUST00000182084.2	known	0.90	36	4	36	4	y	0.93	43	3	43	3	y	0.97	77	2	77	2	y	0.98	43	1	43	1	n	0.97	62	2	62	2	y	0.94	30	2	30	2	y	1.00	37	0	37	0	n	1.00	23	0	23	0	n	1.00	37	0	37	0	n	0.98	49	1	49	1	n	0.93	41	3	41	3	y	1.00	55	0	55	0	n	ENSMUSG00000036615.8	Rfxap	chr3	protein_coding	regulatory factor X-associated protein
known_NIR_12233	chr3	54712888;54713259	54713173;54714620	-	54712888	54714620	cassetteExon	ENSMUST00000044373.6	known	0.06	2.5	36	1;4	36	n	0.04	2.0	43	1;3	43	n	0.01	1.0	77	0;2	77	n	0.01	0.5	43	0;1	43	n	0.04	2.5	62	3;2	62	y	0.08	2.5	30	3;2	30	y	0.04	1.5	37	3;0	37	n	0.04	1.0	23	2;0	23	n	0.00	0.0	37	0;0	37	n	0.03	1.5	49	2;1	49	n	0.06	2.5	41	2;3	41	y	0.02	1.0	55	2;0	55	n	ENSMUSG00000036615.8	Rfxap	chr3	protein_coding	regulatory factor X-associated protein
known_NIR_12234	chr3	55019912	55024405	+	55019638	55024405	A5SS	ENSMUST00000044116.14	known	0.12	3	21	3	21	y	0.17	3	15	3	15	y	0.26	26	74	26	74	y	0.15	5	28	5	28	y	0.12	8	58	8	58	y	0.33	27	54	27	54	y	0.23	15	50	15	50	y	0.38	19	31	19	31	y	0.10	2	19	2	19	y	0.22	8	28	8	28	y	0.10	2	19	2	19	y	0.07	2	27	2	27	y	ENSMUSG00000036580.16	Spg20	chr3	protein_coding	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)
known_NIR_12235	chr3	55023720	55024405	+	55019638	55024405	A5SS	ENSMUST00000044116.14	known	0.00	0	21	0	21	n	0.00	0	15	0	15	n	0.05	4	74	4	74	y	0.00	0	28	0	28	n	0.03	2	58	2	58	y	0.00	0	54	0	54	n	0.00	0	50	0	50	n	0.00	0	31	0	31	n	0.00	0	19	0	19	n	0.07	2	28	2	28	y	0.00	0	19	0	19	n	0.00	0	27	0	27	n	ENSMUSG00000036580.16	Spg20	chr3	protein_coding	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)
known_NIR_12236	chr3	55023720	55024405	+	55019912	55024405	A5SS	ENSMUST00000118118.8	known	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.13	4	26	4	26	y	0.00	0	5	0	5	n	0.20	2	8	2	8	y	0.00	0	27	0	27	n	0.00	0	15	0	15	n	0.00	0	19	0	19	n	0.00	0	2	0	2	n	0.20	2	8	2	8	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000036580.16	Spg20	chr3	protein_coding	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)
known_NIR_12237	chr3	55029218	55033955	+	55029218;55032346	55032176;55033955	ES	ENSMUST00000044116.14	known	0.46	25	29.0	25	20;38	y	0.42	16	22.5	16	25;20	y	0.54	80	68.5	80	69;68	y	0.43	20	27.0	20	19;35	y	0.43	41	54.0	41	41;67	y	0.40	40	60.5	40	64;57	y	0.36	26	46.5	26	38;55	y	0.49	42	43.5	42	39;48	y	0.41	13	18.5	13	17;20	y	0.48	30	33.0	30	35;31	y	0.53	20	17.5	20	8;27	y	0.35	18	33.5	18	25;42	y	ENSMUSG00000036580.16	Spg20	chr3	protein_coding	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)
known_NIR_12238	chr3	5626820	5628225	-	5626824	5628225	A3SS	ENSMUST00000164828.8	known	0.22	30	106	30	106	y	0.17	25	118	25	118	y	0.28	58	149	58	149	y	0.27	42	115	42	115	y	0.22	48	170	48	170	y	0.25	31	95	31	95	y	0.28	46	121	46	121	y	0.25	33	97	33	97	y	0.22	28	100	28	100	y	0.24	42	133	42	133	y	0.18	24	106	24	106	y	0.24	40	124	40	124	y	ENSMUSG00000040374.14	Pex2	chr3	protein_coding	peroxisomal biogenesis factor 2
known_NIR_12239	chr3	5626820	5628225	-	5627792	5628225	A3SS&ES	ENSMUST00000165309.8	known	0.39	30	46	30	46	y	0.49	25	26	25	26	y	0.59	58	41	58	41	y	0.56	42	33	42	33	y	0.48	48	51	48	51	y	0.53	31	27	31	27	y	0.48	46	50	46	50	y	0.52	33	30	33	30	y	0.50	28	28	28	28	y	0.50	42	42	42	42	y	0.55	24	20	24	20	y	0.56	40	32	40	32	y	ENSMUSG00000040374.14	Pex2	chr3	protein_coding	peroxisomal biogenesis factor 2
known_NIR_12240	chr3	5626824	5628225	-	5626824;5627792	5627729;5628225	ES	ENSMUST00000165309.8	known	0.72	106	42.0	106	38;46	y	0.80	118	30.0	118	34;26	y	0.79	149	40.5	149	40;41	y	0.78	115	33.0	115	33;33	y	0.77	170	51.0	170	51;51	y	0.76	95	30.0	95	33;27	y	0.72	121	48.0	121	46;50	y	0.78	97	28.0	97	26;30	y	0.79	100	27.0	100	26;28	y	0.76	133	41.0	133	40;42	y	0.81	106	25.0	106	30;20	y	0.80	124	31.5	124	31;32	y	ENSMUSG00000040374.14	Pex2	chr3	protein_coding	peroxisomal biogenesis factor 2
known_NIR_12241	chr3	5628789	5641098	-	5628789;5630258	5630193;5641098	ES	ENSMUST00000165309.8	known	0.95	71	3.5	71	6;1	n	0.92	87	7.5	87	10;5	y	0.93	120	9.5	120	11;8	y	0.85	106	18.0	106	19;17	y	0.88	123	16.5	123	25;8	y	0.97	64	2.0	64	3;1	n	0.92	106	9.0	106	11;7	y	0.90	74	8.0	74	7;9	y	0.91	76	7.5	76	11;4	y	0.91	109	10.5	109	17;4	y	0.93	64	4.5	64	6;3	y	0.93	95	7.5	95	13;2	y	ENSMUSG00000040374.14	Pex2	chr3	protein_coding	peroxisomal biogenesis factor 2
known_NIR_12242	chr3	5628789	5641098	-	5628789;5635689	5635547;5641098	ES	ENSMUST00000164828.8	known	0.88	71	9.5	71	9;10	y	0.86	87	14.5	87	15;14	y	0.92	120	10.5	120	9;12	y	0.88	106	14.0	106	12;16	y	0.86	123	20.5	123	26;15	y	0.86	64	10.5	64	16;5	y	0.84	106	19.5	106	15;24	y	0.85	74	13.0	74	13;13	y	0.89	76	9.0	76	9;9	y	0.87	109	17.0	109	17;17	y	0.85	64	11.5	64	10;13	y	0.88	95	13.5	95	12;15	y	ENSMUSG00000040374.14	Pex2	chr3	protein_coding	peroxisomal biogenesis factor 2
known_NIR_12243	chr3	5628789;5635689	5635547;5641098	-	5628789;5630258	5630193;5641098	MXE	ENSMUST00000165309.8	known	0.73	9.5	3.5	9;10	6;1	n	0.66	14.5	7.5	15;14	10;5	y	0.53	10.5	9.5	9;12	11;8	y	0.44	14.0	18.0	12;16	19;17	y	0.55	20.5	16.5	26;15	25;8	y	0.84	10.5	2.0	16;5	3;1	n	0.68	19.5	9.0	15;24	11;7	y	0.62	13.0	8.0	13;13	7;9	y	0.55	9.0	7.5	9;9	11;4	y	0.62	17.0	10.5	17;17	17;4	y	0.72	11.5	4.5	10;13	6;3	y	0.64	13.5	7.5	12;15	13;2	y	ENSMUSG00000040374.14	Pex2	chr3	protein_coding	peroxisomal biogenesis factor 2
known_NIR_12244	chr3	57557636	57558843	-	57557636;57558194	57558112;57558843	ES	ENSMUST00000160959.8	known	0.03	2	68.0	2	69;67	y	0.03	2	55.5	2	53;58	y	0.03	2	72.5	2	72;73	y	0.05	4	73.0	4	80;66	y	0.04	4	93.0	4	96;90	y	0.06	3	50.0	3	50;50	y	0.07	5	71.0	5	70;72	y	0.00	0	41.5	0	41;42	n	0.04	3	64.0	3	67;61	y	0.00	0	89.0	0	93;85	n	0.00	0	83.0	0	90;76	n	0.04	3	75.5	3	77;74	y	ENSMUSG00000036513.16	Commd2	chr3	protein_coding	COMM domain containing 2
known_NIR_12245	chr3	57671803	57686804	+	57671803	57676461	3pMXE	ENSMUST00000200600.5	known	0.02	3	162	3	162	y	0.01	1	145	1	145	n	0.01	1	176	1	176	n	0.00	0	268	0	268	n	0.00	1	264	1	264	n	0.00	0	104	0	104	n	0.01	2	216	2	216	y	0.00	0	145	0	145	n	0.00	0	203	0	203	n	0.00	0	301	0	301	n	0.01	1	181	1	181	n	0.00	0	316	0	316	n	ENSMUSG00000036503.14	Rnf13	chr3	protein_coding	ring finger protein 13
known_NIR_12246	chr3	57671803	57686804	+	57671803;57676541	57676461;57686804	ES	ENSMUST00000041826.14	known	0.02	3	171.5	3	162;181	y	0.01	1	159.0	1	145;173	n	0.01	1	175.0	1	176;174	n	0.00	0	282.5	0	268;297	n	0.00	1	272.0	1	264;280	n	0.00	0	115.5	0	104;127	n	0.01	2	213.5	2	216;211	y	0.00	0	135.0	0	145;125	n	0.00	0	206.5	0	203;210	n	0.00	0	276.5	0	301;252	n	0.01	1	189.5	1	181;198	n	0.00	0	316.0	0	316;316	n	ENSMUSG00000036503.14	Rnf13	chr3	protein_coding	ring finger protein 13
known_NIR_12247	chr3	57703706	57709139	+	57703706	57709868	A3SS	ENSMUST00000041826.14	known	0.00	1	213	1	213	n	0.00	0	187	0	187	n	0.03	6	217	6	217	y	0.01	3	326	3	326	y	0.00	0	353	0	353	n	0.02	3	171	3	171	y	0.01	3	342	3	342	y	0.00	0	206	0	206	n	0.01	3	288	3	288	y	0.00	0	426	0	426	n	0.00	0	229	0	229	n	0.01	2	384	2	384	y	ENSMUSG00000036503.14	Rnf13	chr3	protein_coding	ring finger protein 13
known_NIR_12248	chr3	57703716	57709868	+	57703706	57709868	A5SS	ENSMUST00000041826.14	known	0.03	6	213	6	213	y	0.07	13	187	13	187	y	0.03	6	217	6	217	y	0.04	12	326	12	326	y	0.04	14	353	14	353	y	0.02	3	171	3	171	y	0.05	17	342	17	342	y	0.02	5	206	5	206	y	0.06	17	288	17	288	y	0.03	11	426	11	426	y	0.05	12	229	12	229	y	0.05	22	384	22	384	y	ENSMUSG00000036503.14	Rnf13	chr3	protein_coding	ring finger protein 13
known_NIR_12249	chr3	57728021	57732523	+	57728021	57740385	A3SS	ENSMUST00000041826.14	known	0.00	0	279	0	279	n	0.01	2	235	2	235	y	0.00	1	230	1	230	n	0.00	1	370	1	370	n	0.01	3	376	3	376	y	0.02	3	135	3	135	y	0.00	0	347	0	347	n	0.02	3	171	3	171	y	0.00	1	278	1	278	n	0.01	3	388	3	388	y	0.00	0	308	0	308	n	0.00	0	396	0	396	n	ENSMUSG00000036503.14	Rnf13	chr3	protein_coding	ring finger protein 13
known_NIR_12250	chr3	57740465	57740994	+	57740465	57740907	A3SS	ENSMUST00000041826.14	known	0.02	5	299	5	299	y	0.01	2	301	2	301	y	0.01	4	274	4	274	y	0.01	4	293	4	293	y	0.00	1	426	1	426	n	0.01	1	171	1	171	n	0.01	3	377	3	377	y	0.03	5	171	5	171	y	0.03	8	300	8	300	y	0.02	7	444	7	444	y	0.01	2	320	2	320	y	0.01	4	443	4	443	y	ENSMUSG00000036503.14	Rnf13	chr3	protein_coding	ring finger protein 13
known_NIR_12251	chr3	57752787	57754291	-	57752787	57754772	A5SS	ENSMUST00000066882.10	known	0.11	1	8	1	8	n	0.00	0	8	0	8	n	0.11	2	16	2	16	y	0.00	0	10	0	10	n	0.11	2	16	2	16	y	0.00	0	10	0	10	n	0.07	2	26	2	26	y	0.18	2	9	2	9	y	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	ENSMUSG00000027805.17	Pfn2	chr3	protein_coding	profilin 2
known_NIR_12252	chr3	58325034	58366752	+	58325034;58335720	58335649;58366752	ES	ENSMUST00000099090.7	known	0.78	16	4.5	16	4;5	y	0.97	15	0.5	15	1;0	n	0.85	67	11.5	67	12;11	y	1.00	17	0.0	17	0;0	n	0.95	26	1.5	26	2;1	n	0.94	22	1.5	22	1;2	n	0.84	27	5.0	27	6;4	y	0.88	22	3.0	22	2;4	y	0.92	22	2.0	22	0;4	n	0.95	18	1.0	18	2;0	n	0.62	8	5.0	8	9;1	n	0.81	19	4.5	19	5;4	y	ENSMUSG00000027806.10	Tsc22d2	chr3	protein_coding	TSC22 domain family, member 2
known_NIR_12253	chr3	58344896	58366752	+	58325034	58366752	A5SS	ENSMUST00000199164.2	known	0.00	0	16	0	16	n	0.12	2	15	2	15	y	0.09	7	67	7	67	y	0.06	1	17	1	17	n	0.13	4	26	4	26	y	0.04	1	22	1	22	n	0.18	6	27	6	27	y	0.12	3	22	3	22	y	0.15	4	22	4	22	y	0.05	1	18	1	18	n	0.00	0	8	0	8	n	0.05	1	19	1	19	n	ENSMUSG00000027806.10	Tsc22d2	chr3	protein_coding	TSC22 domain family, member 2
known_NIR_12254	chr3	58433858	58438508	+	58433507	58438508	A5SS	ENSMUST00000029387.15	known	0.00	0	16	0	16	n	0.00	0	16	0	16	n	0.14	4	24	4	24	y	0.00	0	27	0	27	n	0.03	1	38	1	38	n	0.15	2	11	2	11	y	0.03	1	31	1	31	n	0.22	4	14	4	14	y	0.00	0	26	0	26	n	0.00	0	41	0	41	n	0.00	0	22	0	22	n	0.00	0	27	0	27	n	ENSMUSG00000027810.15	Eif2a	chr3	protein_coding	eukaryotic translation initiation factor 2A
known_NIR_12255	chr3	58445029	58448461	+	58445029;58447067	58446949;58448461	ES	ENSMUST00000029387.15	known	0.04	2	49.5	2	31;68	y	0.00	0	36.5	0	31;42	n	0.01	1	77.0	1	53;101	n	0.09	7	70.0	7	51;89	y	0.03	2	74.5	2	59;90	y	0.03	1	32.5	1	22;43	n	0.02	1	64.5	1	65;64	n	0.00	0	44.0	0	32;56	n	0.00	0	56.0	0	45;67	n	0.01	1	93.0	1	73;113	n	0.05	3	56.5	3	48;65	y	0.01	1	82.5	1	64;101	n	ENSMUSG00000027810.15	Eif2a	chr3	protein_coding	eukaryotic translation initiation factor 2A
known_NIR_12256	chr3	58583864	58592971	-	58583864	58598817	A5SS	ENSMUST00000070368.8	known	0.00	0	68	0	68	n	0.00	0	76	0	76	n	0.00	0	101	0	101	n	0.00	0	46	0	46	n	0.01	1	83	1	83	n	0.00	0	62	0	62	n	0.00	0	84	0	84	n	0.02	1	63	1	63	n	0.00	0	40	0	40	n	0.00	0	101	0	101	n	0.00	0	68	0	68	n	0.03	3	91	3	91	y	ENSMUSG00000036432.9	Siah2	chr3	protein_coding	siah E3 ubiquitin protein ligase 2
known_NIR_12257	chr3	59989349;59992574	59992506;59993477	+	59989349	59993477	cassetteExon	ENSMUST00000029326.6	known	0.07	1.5	20	1;2	20	n	0.11	1.0	8	1;1	8	n	0.00	0.0	1	0;0	1	n	0.05	1.0	20	0;2	20	n	0.09	1.5	15	2;1	15	n	0.00	0.0	1	0;0	1	n	0.11	3.0	25	1;5	25	n	0.08	0.5	6	1;0	6	n	0.02	0.5	21	0;1	21	n	0.08	3.0	34	2;4	34	y	0.09	3.0	31	3;3	31	y	0.08	1.5	17	0;3	17	n	ENSMUSG00000027762.7	Sucnr1	chr3	protein_coding	succinate receptor 1
known_NIR_12258	chr3	60380594	60503015	+	60380594;60437225	60436177;60503015	ES	ENSMUST00000195077.6	known	0.22	4	14.5	4	3;26	y	0.28	4	10.5	4	0;21	n	0.00	0	20.0	0	0;40	n	0.14	3	18.5	3	1;36	n	0.06	1	16.0	1	1;31	n	0.25	3	9.0	3	2;16	y	0.00	0	20.5	0	1;40	n	0.00	0	12.5	0	0;25	n	0.29	5	12.5	5	0;25	n	0.12	3	23.0	3	0;46	n	0.19	4	17.0	4	0;34	n	0.00	0	20.0	0	1;39	n	ENSMUSG00000027763.14	Mbnl1	chr3	protein_coding	muscleblind like splicing factor 1
known_NIR_12259	chr3	60380594	60503015	+	60408844	60503015	5pMXE	ENSMUST00000191747.6	known	0.50	4	4	4	4	n	0.80	4	1	4	1	n	0.00	0	9	0	9	n	0.30	3	7	3	7	y	0.07	1	13	1	13	n	0.38	3	5	3	5	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.62	5	3	5	3	n	0.50	3	3	3	3	n	0.44	4	5	4	5	n	0.00	0	2	0	2	n	ENSMUSG00000027763.14	Mbnl1	chr3	protein_coding	muscleblind like splicing factor 1
known_NIR_12260	chr3	60408844	60503015	+	60408844	60436177	3pMXE	ENSMUST00000195839.6	known	0.57	4	3	4	3	n	0.25	1	3	1	3	n	0.41	9	13	9	13	y	0.39	7	11	7	11	y	0.57	13	10	13	10	y	0.50	5	5	5	5	y	0.33	4	8	4	8	y	0.62	10	6	10	6	y	0.43	3	4	3	4	n	0.30	3	7	3	7	y	0.50	5	5	5	5	y	0.25	2	6	2	6	n	ENSMUSG00000027763.14	Mbnl1	chr3	protein_coding	muscleblind like splicing factor 1
known_NIR_12261	chr3	60408844	60503015	+	60408844;60436399	60436177;60503015	ES	ENSMUST00000192637.2	known	0.67	4	2.0	4	3;1	n	0.25	1	3.0	1	3;3	n	0.55	9	7.5	9	13;2	y	0.52	7	6.5	7	11;2	y	0.65	13	7.0	13	10;4	y	0.59	5	3.5	5	5;2	y	0.47	4	4.5	4	8;1	n	0.77	10	3.0	10	6;0	n	0.50	3	3.0	3	4;2	n	0.43	3	4.0	3	7;1	n	0.67	5	2.5	5	5;0	n	0.40	2	3.0	2	6;0	n	ENSMUSG00000027763.14	Mbnl1	chr3	protein_coding	muscleblind like splicing factor 1
known_NIR_12262	chr3	60408844	60503015	+	60408844;60437225	60436177;60503015	ES	ENSMUST00000099087.8	known	0.22	4	14.5	4	3;26	y	0.08	1	12.0	1	3;21	n	0.25	9	26.5	9	13;40	y	0.23	7	23.5	7	11;36	y	0.39	13	20.5	13	10;31	y	0.32	5	10.5	5	5;16	y	0.14	4	24.0	4	8;40	y	0.39	10	15.5	10	6;25	y	0.17	3	14.5	3	4;25	y	0.10	3	26.5	3	7;46	y	0.20	5	19.5	5	5;34	y	0.08	2	22.5	2	6;39	y	ENSMUSG00000027763.14	Mbnl1	chr3	protein_coding	muscleblind like splicing factor 1
known_NIR_12263	chr3	60435944	60436177	+	60408844	60436177	A5SS	ENSMUST00000099087.8	known	0.25	1	3	1	3	n	0.50	3	3	3	3	n	0.38	8	13	8	13	y	0.35	6	11	6	11	y	0.09	1	10	1	10	n	0.44	4	5	4	5	n	0.33	4	8	4	8	y	0.33	3	6	3	6	n	0.33	2	4	2	4	n	0.42	5	7	5	7	y	0.44	4	5	4	5	n	0.14	1	6	1	6	n	ENSMUSG00000027763.14	Mbnl1	chr3	protein_coding	muscleblind like splicing factor 1
known_NIR_12264	chr3	60436399	60503015	+	60437225	60503015	A5SS	ENSMUST00000195077.6	known	0.04	1	26	1	26	n	0.12	3	21	3	21	y	0.05	2	40	2	40	y	0.05	2	36	2	36	y	0.11	4	31	4	31	y	0.11	2	16	2	16	y	0.02	1	40	1	40	n	0.00	0	25	0	25	n	0.07	2	25	2	25	y	0.02	1	46	1	46	n	0.00	0	34	0	34	n	0.00	0	39	0	39	n	ENSMUSG00000027763.14	Mbnl1	chr3	protein_coding	muscleblind like splicing factor 1
known_NIR_12265	chr3	60437225	60503015	+	60380594	60503015	A5SS	ENSMUST00000195724.6	known	0.87	26	4	26	4	y	0.84	21	4	21	4	y	1.00	40	0	40	0	n	0.92	36	3	36	3	y	0.97	31	1	31	1	n	0.84	16	3	16	3	y	1.00	40	0	40	0	n	1.00	25	0	25	0	n	0.83	25	5	25	5	y	0.94	46	3	46	3	y	0.89	34	4	34	4	y	1.00	39	0	39	0	n	ENSMUSG00000027763.14	Mbnl1	chr3	protein_coding	muscleblind like splicing factor 1
known_NIR_12266	chr3	60437225	60503015	+	60408515	60503015	A5SS	ENSMUST00000195001.2	known	1.00	26	0	26	0	n	1.00	21	0	21	0	n	1.00	40	0	40	0	n	0.97	36	1	36	1	n	0.97	31	1	31	1	n	1.00	16	0	16	0	n	0.89	40	5	40	5	y	1.00	25	0	25	0	n	0.93	25	2	25	2	y	1.00	46	0	46	0	n	0.92	34	3	34	3	y	0.97	39	1	39	1	n	ENSMUSG00000027763.14	Mbnl1	chr3	protein_coding	muscleblind like splicing factor 1
known_NIR_12267	chr3	60437225	60503015	+	60408844	60503015	A5SS	ENSMUST00000191747.6	known	0.87	26	4	26	4	y	0.95	21	1	21	1	n	0.82	40	9	40	9	y	0.84	36	7	36	7	y	0.70	31	13	31	13	y	0.76	16	5	16	5	y	0.91	40	4	40	4	y	0.71	25	10	25	10	y	0.89	25	3	25	3	y	0.94	46	3	46	3	y	0.87	34	5	34	5	y	0.95	39	2	39	2	y	ENSMUSG00000027763.14	Mbnl1	chr3	protein_coding	muscleblind like splicing factor 1
known_NIR_12268	chr3	60520941	60523041	+	60520941;60522157	60522104;60523041	ES	ENSMUST00000193647.6	known	0.90	22	2.5	22	2;3	y	0.74	21	7.5	21	6;9	y	0.66	19	10.0	19	12;8	y	0.76	31	10.0	31	10;10	y	0.82	39	8.5	39	6;11	y	0.85	25	4.5	25	2;7	y	0.75	27	9.0	27	9;9	y	0.68	21	10.0	21	9;11	y	0.61	14	9.0	14	9;9	y	0.73	33	12.0	33	10;14	y	0.69	19	8.5	19	8;9	y	0.67	32	16.0	32	20;12	y	ENSMUSG00000027763.14	Mbnl1	chr3	protein_coding	muscleblind like splicing factor 1
known_NIR_12269	chr3	60520941	60523146	+	60520941	60522104	A3SS&ES	ENSMUST00000193647.6	known	0.50	2	2	2	2	n	0.00	0	6	0	6	n	0.29	5	12	5	12	y	0.00	0	10	0	10	n	0.40	4	6	4	6	y	0.00	0	2	0	2	n	0.10	1	9	1	9	n	0.18	2	9	2	9	y	0.00	0	9	0	9	n	0.23	3	10	3	10	y	0.00	0	8	0	8	n	0.00	0	20	0	20	n	ENSMUSG00000027763.14	Mbnl1	chr3	protein_coding	muscleblind like splicing factor 1
known_NIR_12270	chr3	60520941	60523146	+	60520941	60523041	A3SS	ENSMUST00000192807.6	known	0.08	2	22	2	22	y	0.00	0	21	0	21	n	0.21	5	19	5	19	y	0.00	0	31	0	31	n	0.09	4	39	4	39	y	0.00	0	25	0	25	n	0.04	1	27	1	27	n	0.09	2	21	2	21	y	0.00	0	14	0	14	n	0.08	3	33	3	33	y	0.00	0	19	0	19	n	0.00	0	32	0	32	n	ENSMUSG00000027763.14	Mbnl1	chr3	protein_coding	muscleblind like splicing factor 1
known_NIR_12271	chr3	60523194	60529567	+	60523194	60528844	3pMXE	ENSMUST00000193647.6	known	0.83	5	1	5	1	n	0.88	7	1	7	1	n	0.79	19	5	19	5	y	0.79	11	3	11	3	y	0.77	17	5	17	5	y	0.64	9	5	9	5	y	0.88	21	3	21	3	y	0.81	13	3	13	3	y	1.00	18	0	18	0	n	0.86	12	2	12	2	y	0.90	9	1	9	1	n	0.65	11	6	11	6	y	ENSMUSG00000027763.14	Mbnl1	chr3	protein_coding	muscleblind like splicing factor 1
known_NIR_12272	chr3	60523194	60529567	+	60523194;60528879	60528844;60529567	ES	ENSMUST00000192807.6	known	0.59	5	3.5	5	1;6	n	0.82	7	1.5	7	1;2	n	0.79	19	5.0	19	5;5	y	0.81	11	2.5	11	3;2	y	0.76	17	5.5	17	5;6	y	0.69	9	4.0	9	5;3	y	0.86	21	3.5	21	3;4	y	0.84	13	2.5	13	3;2	y	0.90	18	2.0	18	0;4	n	0.89	12	1.5	12	2;1	n	0.82	9	2.0	9	1;3	n	0.63	11	6.5	11	6;7	y	ENSMUSG00000027763.14	Mbnl1	chr3	protein_coding	muscleblind like splicing factor 1
known_NIR_12273	chr3	60523194	60532545	+	60523194	60528844	3pMXE	ENSMUST00000193647.6	known	0.97	33	1	33	1	n	0.95	18	1	18	1	n	0.78	18	5	18	5	y	0.91	29	3	29	3	y	0.89	40	5	40	5	y	0.74	14	5	14	5	y	0.92	35	3	35	3	y	0.88	23	3	23	3	y	1.00	18	0	18	0	n	0.94	33	2	33	2	y	0.95	19	1	19	1	n	0.80	24	6	24	6	y	ENSMUSG00000027763.14	Mbnl1	chr3	protein_coding	muscleblind like splicing factor 1
known_NIR_12274	chr3	60523194	60532545	+	60529661	60532545	A5SS&ES	ENSMUST00000191638.6	known	0.69	33	15	33	15	y	0.55	18	15	18	15	y	0.37	18	31	18	31	y	0.59	29	20	29	20	y	0.52	40	37	40	37	y	0.38	14	23	14	23	y	0.57	35	26	35	26	y	0.62	23	14	23	14	y	0.56	18	14	18	14	y	0.58	33	24	33	24	y	0.53	19	17	19	17	y	0.50	24	24	24	24	y	ENSMUSG00000027763.14	Mbnl1	chr3	protein_coding	muscleblind like splicing factor 1
known_NIR_12275	chr3	60523194;60528879	60528844;60532545	+	60523194	60532545	cassetteExon	ENSMUST00000194069.6	known	0.01	0.5	33	1;0	33	n	0.05	1.0	18	1;1	18	n	0.12	2.5	18	5;0	18	n	0.05	1.5	29	3;0	29	n	0.08	3.5	40	5;2	40	y	0.15	2.5	14	5;0	14	n	0.05	2.0	35	3;1	35	n	0.10	2.5	23	3;2	23	y	0.05	1.0	18	0;2	18	n	0.03	1.0	33	2;0	33	n	0.05	1.0	19	1;1	19	n	0.13	3.5	24	6;1	24	n	ENSMUSG00000027763.14	Mbnl1	chr3	protein_coding	muscleblind like splicing factor 1
known_NIR_12276	chr3	60523194;60528879	60528844;60532545	+	60523194;60529661	60529567;60532545	MXE	ENSMUST00000194201.6	known	0.05	0.5	10.0	1;0	5;15	n	0.08	1.0	11.0	1;1	7;15	n	0.09	2.5	25.0	5;0	19;31	n	0.09	1.5	15.5	3;0	11;20	n	0.11	3.5	27.0	5;2	17;37	y	0.14	2.5	16.0	5;0	9;23	n	0.08	2.0	23.5	3;1	21;26	n	0.16	2.5	13.5	3;2	13;14	y	0.06	1.0	16.0	0;2	18;14	n	0.05	1.0	18.0	2;0	12;24	n	0.07	1.0	13.0	1;1	9;17	n	0.17	3.5	17.5	6;1	11;24	n	ENSMUSG00000027763.14	Mbnl1	chr3	protein_coding	muscleblind like splicing factor 1
known_NIR_12277	chr3	60523194;60529661	60529567;60532545	+	60523194	60532545	cassetteExon	ENSMUST00000194069.6	known	0.23	10.0	33	5;15	33	y	0.38	11.0	18	7;15	18	y	0.58	25.0	18	19;31	18	y	0.35	15.5	29	11;20	29	y	0.40	27.0	40	17;37	40	y	0.53	16.0	14	9;23	14	y	0.40	23.5	35	21;26	35	y	0.37	13.5	23	13;14	23	y	0.47	16.0	18	18;14	18	y	0.35	18.0	33	12;24	33	y	0.41	13.0	19	9;17	19	y	0.42	17.5	24	11;24	24	y	ENSMUSG00000027763.14	Mbnl1	chr3	protein_coding	muscleblind like splicing factor 1
known_NIR_12278	chr3	60528879	60532545	+	60528879;60529661	60529567;60532545	ES	ENSMUST00000192807.6	known	0.00	0	10.5	0	6;15	n	0.11	1	8.5	1	2;15	n	0.00	0	18.0	0	5;31	n	0.00	0	11.0	0	2;20	n	0.09	2	21.5	2	6;37	y	0.00	0	13.0	0	3;23	n	0.06	1	15.0	1	4;26	n	0.20	2	8.0	2	2;14	y	0.18	2	9.0	2	4;14	y	0.00	0	12.5	0	1;24	n	0.09	1	10.0	1	3;17	n	0.06	1	15.5	1	7;24	n	ENSMUSG00000027763.14	Mbnl1	chr3	protein_coding	muscleblind like splicing factor 1
known_NIR_12279	chr3	60528879	60532545	+	60529661	60532545	A5SS&ES	ENSMUST00000191638.6	known	0.00	0	15	0	15	n	0.06	1	15	1	15	n	0.00	0	31	0	31	n	0.00	0	20	0	20	n	0.05	2	37	2	37	y	0.00	0	23	0	23	n	0.04	1	26	1	26	n	0.12	2	14	2	14	y	0.12	2	14	2	14	y	0.00	0	24	0	24	n	0.06	1	17	1	17	n	0.04	1	24	1	24	n	ENSMUSG00000027763.14	Mbnl1	chr3	protein_coding	muscleblind like splicing factor 1
known_NIR_12280	chr3	62285065	62286122	+	62285065	62288252	A3SS	ENSMUST00000079300.13	known	0.09	6	59	6	59	y	0.24	18	58	18	58	y	0.30	36	86	36	86	y	0.11	12	94	12	94	y	0.04	6	137	6	137	y	0.31	19	43	19	43	y	0.23	26	89	26	89	y	0.12	9	69	9	69	y	0.10	4	37	4	37	y	0.04	3	75	3	75	y	0.14	6	38	6	38	y	0.08	7	78	7	78	y	ENSMUSG00000036885.15	Arhgef26	chr3	protein_coding	Rho guanine nucleotide exchange factor (GEF) 26
known_NIR_12281	chr3	62365861	62367625	+	62365861;62367135	62367031;62367625	ES	ENSMUST00000079300.13	known	0.03	3	92.5	3	87;98	y	0.02	2	87.0	2	81;93	y	0.00	0	113.0	0	106;120	n	0.01	1	85.5	1	72;99	n	0.03	4	146.5	4	127;166	y	0.00	0	62.0	0	58;66	n	0.00	0	113.0	0	104;122	n	0.01	1	69.0	1	59;79	n	0.00	0	39.5	0	34;45	n	0.00	0	81.5	0	79;84	n	0.00	0	42.0	0	33;51	n	0.04	4	95.5	4	93;98	y	ENSMUSG00000036885.15	Arhgef26	chr3	protein_coding	Rho guanine nucleotide exchange factor (GEF) 26
known_NIR_12282	chr3	63849950	63850643	-	63841325	63850643	A3SS	ENSMUST00000161659.8	known	0.43	3	4	3	4	n	0.50	4	4	4	4	n	0.60	6	4	6	4	y	0.00	0	3	0	3	n	0.56	5	4	5	4	n	0.57	4	3	4	3	n	0.67	8	4	8	4	y	0.50	2	2	2	2	n	1.00	4	0	4	0	n	0.33	2	4	2	4	n	0.40	2	3	2	3	n	0.00	0	4	0	4	n	ENSMUSG00000027822.17	Slc33a1	chr3	protein_coding	solute carrier family 33 (acetyl-CoA transporter), member 1
known_NIR_12283	chr3	65856211	65857901	-	65857647	65857901	3pMXE	ENSMUST00000145186.8	known	0.84	21	4	21	4	y	0.73	11	4	11	4	y	0.85	58	10	58	10	y	0.71	22	9	22	9	y	0.76	37	12	37	12	y	0.70	16	7	16	7	y	0.63	26	15	26	15	y	0.69	22	10	22	10	y	0.78	18	5	18	5	y	0.79	26	7	26	7	y	0.70	19	8	19	8	y	0.78	18	5	18	5	y	ENSMUSG00000027829.16	Ccnl1	chr3	protein_coding	cyclin L1
known_NIR_12284	chr3	65856211;65857647	65857634;65857901	-	65856211	65857901	cassetteExon	ENSMUST00000129002.8	known	0.12	3.0	21	2;4	21	y	0.15	2.0	11	0;4	11	n	0.09	6.0	58	2;10	58	y	0.21	6.0	22	3;9	22	y	0.17	7.5	37	3;12	37	y	0.20	4.0	16	1;7	16	n	0.26	9.0	26	3;15	26	y	0.24	7.0	22	4;10	22	y	0.16	3.5	18	2;5	18	y	0.12	3.5	26	0;7	26	n	0.24	6.0	19	4;8	19	y	0.16	3.5	18	2;5	18	y	ENSMUSG00000027829.16	Ccnl1	chr3	protein_coding	cyclin L1
known_NIR_12285	chr3	65858975	65860158	-	65858975	65862551	A5SS	ENSMUST00000129002.8	known	0.09	1	10	1	10	n	0.33	1	2	1	2	n	0.75	6	2	6	2	n	0.00	0	8	0	8	n	0.40	4	6	4	6	y	0.33	2	4	2	4	n	0.28	5	13	5	13	y	0.00	0	10	0	10	n	0.30	3	7	3	7	y	0.29	4	10	4	10	y	0.00	0	6	0	6	n	0.12	2	14	2	14	y	ENSMUSG00000027829.16	Ccnl1	chr3	protein_coding	cyclin L1
known_NIR_12286	chr3	65858975	65860158	-	65858975	65862625	A5SS	ENSMUST00000154585.8	known	0.08	1	12	1	12	n	0.04	1	26	1	26	n	0.13	6	41	6	41	y	0.00	0	27	0	27	n	0.12	4	29	4	29	y	0.08	2	22	2	22	y	0.11	5	40	5	40	y	0.00	0	22	0	22	n	0.15	3	17	3	17	y	0.16	4	21	4	21	y	0.00	0	25	0	25	n	0.08	2	23	2	23	y	ENSMUSG00000027829.16	Ccnl1	chr3	protein_coding	cyclin L1
known_NIR_12287	chr3	65858975	65860158	-	65858975	65864274	A5SS	ENSMUST00000029416.14	known	0.11	1	8	1	8	n	0.14	1	6	1	6	n	0.27	6	16	6	16	y	0.00	0	18	0	18	n	0.15	4	22	4	22	y	0.11	2	17	2	17	y	0.28	5	13	5	13	y	0.00	0	9	0	9	n	0.19	3	13	3	13	y	0.21	4	15	4	15	y	0.00	0	3	0	3	n	0.11	2	17	2	17	y	ENSMUSG00000027829.16	Ccnl1	chr3	protein_coding	cyclin L1
known_NIR_12288	chr3	65858975	65862625	-	65858975	65862551	A5SS	ENSMUST00000129002.8	known	0.55	12	10	12	10	y	0.93	26	2	26	2	y	0.95	41	2	41	2	y	0.77	27	8	27	8	y	0.83	29	6	29	6	y	0.85	22	4	22	4	y	0.75	40	13	40	13	y	0.69	22	10	22	10	y	0.71	17	7	17	7	y	0.68	21	10	21	10	y	0.81	25	6	25	6	y	0.62	23	14	23	14	y	ENSMUSG00000027829.16	Ccnl1	chr3	protein_coding	cyclin L1
known_NIR_12289	chr3	65858975	65864274	-	65858975;65862697	65862551;65864274	ES	ENSMUST00000129002.8	known	0.25	8	23.5	8	10;37	y	0.34	6	11.5	6	2;21	y	0.34	16	31.0	16	2;60	y	0.46	18	21.5	18	8;35	y	0.41	22	32.0	22	6;58	y	0.51	17	16.5	17	4;29	y	0.34	13	25.5	13	13;38	y	0.25	9	27.5	9	10;45	y	0.43	13	17.5	13	7;28	y	0.40	15	22.5	15	10;35	y	0.16	3	15.5	3	6;25	y	0.36	17	30.0	17	14;46	y	ENSMUSG00000027829.16	Ccnl1	chr3	protein_coding	cyclin L1
known_NIR_12290	chr3	65858975	65864274	-	65858975;65862697	65862625;65864274	ES	ENSMUST00000154585.8	known	0.25	8	24.5	8	12;37	y	0.20	6	23.5	6	26;21	y	0.24	16	50.5	16	41;60	y	0.37	18	31.0	18	27;35	y	0.34	22	43.5	22	29;58	y	0.40	17	25.5	17	22;29	y	0.25	13	39.0	13	40;38	y	0.21	9	33.5	9	22;45	y	0.37	13	22.5	13	17;28	y	0.35	15	28.0	15	21;35	y	0.11	3	25.0	3	25;25	y	0.33	17	34.5	17	23;46	y	ENSMUSG00000027829.16	Ccnl1	chr3	protein_coding	cyclin L1
known_NIR_12291	chr3	66893139	66901850	+	66888875	66901850	A5SS	ENSMUST00000162036.8	known	1.00	20	0	20	0	n	1.00	11	0	11	0	n	1.00	16	0	16	0	n	1.00	20	0	20	0	n	1.00	25	0	25	0	n	1.00	14	0	14	0	n	0.95	38	2	38	2	y	1.00	4	0	4	0	n	1.00	17	0	17	0	n	1.00	25	0	25	0	n	1.00	15	0	15	0	n	1.00	26	0	26	0	n	ENSMUSG00000034544.18	Rsrc1	chr3	protein_coding	arginine/serine-rich coiled-coil 1
known_NIR_12292	chr3	66893422	66901850	+	66893139	66901850	A5SS	ENSMUST00000065074.14	known	0.00	0	20	0	20	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.00	0	20	0	20	n	0.00	0	25	0	25	n	0.00	0	14	0	14	n	0.00	0	38	0	38	n	0.00	0	4	0	4	n	0.00	0	17	0	17	n	0.00	0	25	0	25	n	0.00	0	15	0	15	n	0.07	2	26	2	26	y	ENSMUSG00000034544.18	Rsrc1	chr3	protein_coding	arginine/serine-rich coiled-coil 1
known_NIR_12293	chr3	66893521	66901850	+	66893139	66901850	A5SS	ENSMUST00000065074.14	known	0.00	0	20	0	20	n	0.00	0	11	0	11	n	0.06	1	16	1	16	n	0.31	9	20	9	20	y	0.07	2	25	2	25	y	0.00	0	14	0	14	n	0.00	0	38	0	38	n	0.00	0	4	0	4	n	0.00	0	17	0	17	n	0.00	0	25	0	25	n	0.12	2	15	2	15	y	0.10	3	26	3	26	y	ENSMUSG00000034544.18	Rsrc1	chr3	protein_coding	arginine/serine-rich coiled-coil 1
known_NIR_12294	chr3	66902045	66903804	+	66902045	66903798	A3SS	ENSMUST00000162036.8	known	0.03	1	33	1	33	n	0.00	0	26	0	26	n	0.07	2	27	2	27	y	0.00	0	35	0	35	n	0.06	1	17	1	17	n	0.00	0	16	0	16	n	0.00	0	24	0	24	n	0.09	1	10	1	10	n	0.00	0	16	0	16	n	0.00	0	28	0	28	n	0.00	0	21	0	21	n	0.08	3	34	3	34	y	ENSMUSG00000034544.18	Rsrc1	chr3	protein_coding	arginine/serine-rich coiled-coil 1
known_NIR_12295	chr3	66903923	67088162	+	66903923	66989869	3pMXE	ENSMUST00000162620.9	known	0.00	0	27	0	27	n	0.00	0	24	0	24	n	0.05	2	38	2	38	y	0.00	0	36	0	36	n	0.00	0	49	0	49	n	0.00	0	29	0	29	n	0.00	0	42	0	42	n	0.04	1	27	1	27	n	0.00	0	28	0	28	n	0.09	3	30	3	30	y	0.00	0	28	0	28	n	0.00	0	41	0	41	n	ENSMUSG00000034544.18	Rsrc1	chr3	protein_coding	arginine/serine-rich coiled-coil 1
known_NIR_12296	chr3	66903923	67088162	+	66903923;66990042	66989869;67088162	ES	ENSMUST00000162036.8	known	0.00	0	31.5	0	27;36	n	0.00	0	29.5	0	24;35	n	0.04	2	43.0	2	38;48	y	0.00	0	45.5	0	36;55	n	0.00	0	56.5	0	49;64	n	0.00	0	32.0	0	29;35	n	0.00	0	50.5	0	42;59	n	0.05	1	20.5	1	27;14	n	0.00	0	32.5	0	28;37	n	0.06	3	44.5	3	30;59	y	0.00	0	30.5	0	28;33	n	0.00	0	44.5	0	41;48	n	ENSMUSG00000034544.18	Rsrc1	chr3	protein_coding	arginine/serine-rich coiled-coil 1
known_NIR_12297	chr3	67257348	67263554	+	67257348;67262959	67262807;67263554	ES	ENSMUST00000162036.8	known	0.17	5	25.0	5	30;20	y	0.17	5	24.0	5	26;22	y	0.07	3	37.5	3	45;30	y	0.13	5	33.0	5	37;29	y	0.10	4	35.5	4	36;35	y	0.14	2	12.5	2	14;11	y	0.17	8	38.0	8	46;30	y	0.11	2	15.5	2	20;11	y	0.12	3	23.0	3	21;25	y	0.12	5	38.0	5	42;34	y	0.24	10	32.0	10	31;33	y	0.16	7	38.0	7	42;34	y	ENSMUSG00000034544.18	Rsrc1	chr3	protein_coding	arginine/serine-rich coiled-coil 1
known_NIR_12298	chr3	67292031;67298355	67298311;67300225	+	67292031	67300225	cassetteExon	ENSMUST00000077916.12	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.91	21.5	2	19;24	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000048416.16	Mlf1	chr3	protein_coding	myeloid leukemia factor 1
known_NIR_12299	chr3	68491757	68503483	+	68402590	68503483	A5SS	ENSMUST00000182006.4	known	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.80	8	2	8	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000102422.2	Iqschfp	chr3	protein_coding	Iqcj and Schip1 fusion protein
known_NIR_12300	chr3	68825958	68838155	-	68825958;68835124	68835060;68838155	ES	ENSMUST00000107812.8	known	0.00	0	5.5	0	5;6	n	0.33	1	2.0	1	4;0	n	0.25	2	6.0	2	5;7	y	0.00	0	2.5	0	4;1	n	0.48	5	5.5	5	4;7	y	0.00	0	4.5	0	4;5	n	0.33	3	6.0	3	7;5	y	0.22	1	3.5	1	3;4	n	0.00	0	3.5	0	2;5	n	0.48	5	5.5	5	5;6	y	0.00	0	4.0	0	3;5	n	0.40	2	3.0	2	3;3	n	ENSMUSG00000027778.16	Ift80	chr3	protein_coding	intraflagellar transport 80
known_NIR_12301	chr3	68925662	68926508	+	68925544	68926508	A5SS	ENSMUST00000042901.15	known	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.12	2	14	2	14	y	0.00	0	8	0	8	n	0.00	0	19	0	19	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	ENSMUSG00000034349.15	Smc4	chr3	protein_coding	structural maintenance of chromosomes 4
known_NIR_12302	chr3	69009581	69033843	-	69009581	69034065	A5SS	ENSMUST00000029353.9	known	0.00	0	20	0	20	n	0.00	0	21	0	21	n	0.00	0	42	0	42	n	0.00	0	68	0	68	n	0.02	1	42	1	42	n	0.08	2	22	2	22	y	0.03	2	60	2	60	y	0.00	0	42	0	42	n	0.00	0	26	0	26	n	0.02	1	57	1	57	n	0.00	0	16	0	16	n	0.04	2	53	2	53	y	ENSMUSG00000027782.11	Kpna4	chr3	protein_coding	karyopherin (importin) alpha 4
known_NIR_12303	chr3	69629799	69636671	+	69629799	69631590	3pMXE	ENSMUST00000149680.8	known	0.04	2	50	2	50	y	0.03	1	33	1	33	n	0.00	0	61	0	61	n	0.00	0	44	0	44	n	0.00	0	75	0	75	n	0.00	0	24	0	24	n	0.03	2	58	2	58	y	0.00	0	20	0	20	n	0.00	0	30	0	30	n	0.15	8	44	8	44	y	0.05	2	35	2	35	y	0.08	5	58	5	58	y	ENSMUSG00000027787.15	Nmd3	chr3	protein_coding	NMD3 ribosome export adaptor
known_NIR_12304	chr3	69633790	69636671	+	69629799	69636671	A5SS	ENSMUST00000143041.8	known	0.95	36	2	36	2	y	0.96	27	1	27	1	n	1.00	46	0	46	0	n	1.00	35	0	35	0	n	1.00	65	0	65	0	n	1.00	21	0	21	0	n	0.94	29	2	29	2	y	1.00	32	0	32	0	n	1.00	27	0	27	0	n	0.81	34	8	34	8	y	0.92	22	2	22	2	y	0.87	33	5	33	5	y	ENSMUSG00000027787.15	Nmd3	chr3	protein_coding	NMD3 ribosome export adaptor
known_NIR_12305	chr3	73609432;73613927	73613872;73615468	-	73609432	73615468	cassetteExon	ENSMUST00000029367.6	known	0.00	0.0	30	0;0	30	n	0.15	3.0	17	3;3	17	y	0.05	1.0	18	2;0	18	n	0.01	0.5	77	1;0	77	n	0.06	6.0	99	7;5	99	y	0.10	3.5	30	4;3	30	y	0.07	4.0	53	5;3	53	y	0.10	4.0	35	4;4	35	y	0.08	3.0	33	2;4	33	y	0.03	2.5	79	1;4	79	n	0.00	0.0	31	0;0	31	n	0.07	6.0	79	5;7	79	y	ENSMUSG00000027792.12	Bche	chr3	protein_coding	butyrylcholinesterase
known_NIR_12306	chr3	7494167	7502398	+	7431812	7502398	A5SS	ENSMUST00000028999.12	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.69	20	9	20	9	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027499.13	Pkia	chr3	protein_coding	protein kinase inhibitor, alpha
known_NIR_12307	chr3	75440897	75448467	-	75440901	75448467	A3SS	ENSMUST00000161137.8	known	0.00	0	81	0	81	n	0.00	0	50	0	50	n	0.00	0	102	0	102	n	0.00	0	96	0	96	n	0.00	0	106	0	106	n	0.00	0	43	0	43	n	0.00	0	77	0	77	n	0.04	2	54	2	54	y	0.00	0	52	0	52	n	0.00	0	111	0	111	n	0.00	0	80	0	80	n	0.00	0	119	0	119	n	ENSMUSG00000027835.12	Pdcd10	chr3	protein_coding	programmed cell death 10
known_NIR_12308	chr3	75802381	75805278	-	75802444	75805278	A3SS	ENSMUST00000038563.14	known	0.04	4	86	4	86	y	0.09	4	43	4	43	y	0.05	11	192	11	192	y	0.03	3	99	3	99	y	0.03	5	175	5	175	y	0.02	2	97	2	97	y	0.02	2	113	2	113	y	0.06	7	114	7	114	y	0.02	2	86	2	86	y	0.10	10	95	10	95	y	0.08	5	54	5	54	y	0.04	5	124	5	124	y	ENSMUSG00000034109.16	Golim4	chr3	protein_coding	golgi integral membrane protein 4
known_NIR_12309	chr3	75805439	75810554	-	75805439	75809708	5pMXE	ENSMUST00000150904.2	known	0.17	12	58	12	58	y	0.09	4	42	4	42	y	0.15	23	127	23	127	y	0.23	19	64	19	64	y	0.25	34	101	34	101	y	0.09	7	73	7	73	y	0.13	10	65	10	65	y	0.16	14	71	14	71	y	0.28	17	44	17	44	y	0.30	26	60	26	60	y	0.15	8	45	8	45	y	0.26	24	69	24	69	y	ENSMUSG00000034109.16	Golim4	chr3	protein_coding	golgi integral membrane protein 4
known_NIR_12310	chr3	75805439;75809791	75809708;75810554	-	75805439	75810554	cassetteExon	ENSMUST00000038563.14	known	0.81	52.0	12	58;46	12	y	0.91	41.5	4	42;41	4	y	0.85	127.5	23	127;128	23	y	0.76	59.5	19	64;55	19	y	0.76	108.5	34	101;116	34	y	0.91	70.5	7	73;68	7	y	0.88	72.0	10	65;79	10	y	0.84	72.5	14	71;74	14	y	0.73	46.5	17	44;49	17	y	0.71	64.0	26	60;68	26	y	0.84	42.0	8	45;39	8	y	0.72	61.0	24	69;53	24	y	ENSMUSG00000034109.16	Golim4	chr3	protein_coding	golgi integral membrane protein 4
known_NIR_12311	chr3	79326726	79356552	+	79326726	79337229	3pMXE	ENSMUST00000195157.2	known	-	-	-	-	-	-	-	-	-	-	-	-	0.40	4	6	4	6	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.17	1	5	1	5	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000091685.7	Gm17359	chr3	protein_coding	predicted gene, 17359
known_NIR_12312	chr3	79413585	79415394	-	79413585;79415235	79415146;79415394	ES	ENSMUST00000133154.7	known	0.00	0	8.5	0	8;9	n	0.00	0	4.5	0	2;7	n	0.23	4	13.5	4	14;13	y	0.00	0	20.0	0	15;25	n	0.00	0	7.5	0	8;7	n	0.00	0	4.0	0	3;5	n	0.20	3	12.0	3	13;11	y	0.00	0	10.5	0	12;9	n	0.00	0	9.5	0	12;7	n	0.00	0	21.5	0	22;21	n	0.00	0	11.0	0	12;10	n	0.37	5	8.5	5	8;9	y	ENSMUSG00000061175.13	Fnip2	chr3	protein_coding	folliculin interacting protein 2
known_NIR_12313	chr3	79502615	79504992	+	79503505	79504992	5pMXE	ENSMUST00000161876.2	known	0.97	85	3	85	3	y	1.00	51	0	51	0	n	1.00	41	0	41	0	n	0.97	100	3	100	3	y	1.00	74	0	74	0	n	1.00	10	0	10	0	n	1.00	69	0	69	0	n	0.95	18	1	18	1	n	0.91	53	5	53	5	y	0.98	84	2	84	2	y	1.00	61	0	61	0	n	0.95	84	4	84	4	y	ENSMUSG00000027804.14	Ppid	chr3	protein_coding	peptidylprolyl isomerase D (cyclophilin D)
known_NIR_12314	chr3	79502615;79503505	79503399;79504992	+	79502615	79504992	cassetteExon	ENSMUST00000029382.13	known	0.03	2.5	85	2;3	85	y	0.05	2.5	51	5;0	51	n	0.04	1.5	41	3;0	41	n	0.01	1.5	100	0;3	100	n	0.02	1.5	74	3;0	74	n	0.05	0.5	10	1;0	10	n	0.01	0.5	69	1;0	69	n	0.03	0.5	18	0;1	18	n	0.06	3.5	53	2;5	53	y	0.01	1.0	84	0;2	84	n	0.02	1.5	61	3;0	61	n	0.02	2.0	84	0;4	84	n	ENSMUSG00000027804.14	Ppid	chr3	protein_coding	peptidylprolyl isomerase D (cyclophilin D)
known_NIR_12315	chr3	79530985	79535788	-	79530985	79535825	A5SS	ENSMUST00000029386.14	known	0.00	0	182	0	182	n	0.00	0	175	0	175	n	0.01	5	481	5	481	y	0.01	2	323	2	323	y	0.00	0	496	0	496	n	0.02	6	258	6	258	y	0.00	2	493	2	493	y	0.00	0	303	0	303	n	0.01	2	222	2	222	y	0.01	4	454	4	454	y	0.01	3	256	3	256	y	0.01	2	362	2	362	y	ENSMUSG00000027809.15	Etfdh	chr3	protein_coding	electron transferring flavoprotein, dehydrogenase
known_NIR_12316	chr3	79535708	79535825	-	79530985	79535825	A3SS	ENSMUST00000029386.14	known	0.02	3	182	3	182	y	0.01	2	175	2	175	y	0.01	4	481	4	481	y	0.00	0	323	0	323	n	0.01	3	496	3	496	y	0.01	2	258	2	258	y	0.01	3	493	3	493	y	0.03	9	303	9	303	y	0.00	0	222	0	222	n	0.01	4	454	4	454	y	0.01	2	256	2	256	y	0.01	5	362	5	362	y	ENSMUSG00000027809.15	Etfdh	chr3	protein_coding	electron transferring flavoprotein, dehydrogenase
known_NIR_12317	chr3	80944861;81038383	81038325;81048712	+	80944861	81048712	cassetteExon	ENSMUST00000029652.4	known	1.00	2.5	0	2;3	0	n	0.09	0.5	5	1;0	5	n	0.03	0.5	18	0;1	18	n	0.14	1.0	6	0;2	6	n	0.00	0.0	6	0;0	6	n	0.09	1.0	10	0;2	10	n	0.00	0.0	8	0;0	8	n	0.00	0.0	2	0;0	2	n	0.27	1.5	4	2;1	4	n	0.06	0.5	8	0;1	8	n	0.00	0.0	3	0;0	3	n	0.22	2.0	7	2;2	7	y	ENSMUSG00000028019.10	Pdgfc	chr3	protein_coding	platelet-derived growth factor, C polypeptide
known_NIR_12318	chr3	81882736	81883080	-	81882736	81882966	A5SS	ENSMUST00000029645.14	known	0.00	8	3101	8	3101	y	0.00	4	2016	4	2016	y	0.00	5	2019	5	2019	y	0.00	5	4081	5	4081	y	0.00	12	4918	12	4918	y	0.00	6	2486	6	2486	y	0.00	12	4544	12	4544	y	0.00	5	3131	5	3131	y	0.00	4	2912	4	2912	y	0.00	11	3833	11	3833	y	0.01	14	2699	14	2699	y	0.00	9	5184	9	5184	y	ENSMUSG00000028011.17	Tdo2	chr3	protein_coding	tryptophan 2,3-dioxygenase
known_NIR_12319	chr3	81904297	81906891	+	81904297;81906427	81906271;81906891	ES	ENSMUST00000142889.2	known	0.80	4	1.0	4	0;2	n	0.67	2	1.0	2	1;1	n	0.71	6	2.5	6	4;1	n	0.86	6	1.0	6	2;0	n	0.82	9	2.0	9	2;2	y	0.47	4	4.5	4	6;3	y	0.77	15	4.5	15	8;1	n	0.89	16	2.0	16	3;1	n	0.83	5	1.0	5	1;1	n	0.89	8	1.0	8	1;1	n	0.77	5	1.5	5	3;0	n	0.44	4	5.0	4	5;5	y	ENSMUSG00000028008.11	Asic5	chr3	protein_coding	acid-sensing (proton-gated) ion channel family member 5
known_NIR_12320	chr3	82977108	82977930	+	82977108	82977904	A3SS	ENSMUST00000150268.8	known	0.00	0	82	0	82	n	0.00	0	86	0	86	n	0.01	2	185	2	185	y	0.00	0	75	0	75	n	0.00	0	153	0	153	n	0.00	0	81	0	81	n	0.00	0	120	0	120	n	0.00	0	66	0	66	n	0.00	0	76	0	76	n	0.00	0	100	0	100	n	0.00	0	85	0	85	n	0.00	0	98	0	98	n	ENSMUSG00000027998.12	Plrg1	chr3	protein_coding	pleiotropic regulator 1
known_NIR_12321	chr3	83807722	83808653	-	83807725	83808653	A3SS	ENSMUST00000191758.6	known	0.05	1	19	1	19	n	0.11	2	17	2	17	y	0.00	0	3	0	3	n	0.31	12	27	12	27	y	0.25	6	18	6	18	y	0.50	2	2	2	2	n	0.09	3	29	3	29	y	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.07	3	40	3	40	y	0.17	6	30	6	30	y	0.21	8	30	8	30	y	ENSMUSG00000033767.15	Tmem131l	chr3	protein_coding	transmembrane 131 like
known_NIR_12322	chr3	83813732	83817676	-	83813732	83816459	5pMXE	ENSMUST00000195245.6	known	0.24	5	16	5	16	y	0.04	1	24	1	24	n	0.33	1	2	1	2	n	0.10	2	18	2	18	y	0.04	1	22	1	22	n	0.75	3	1	3	1	n	0.15	4	22	4	22	y	0.00	0	6	0	6	n	0.00	0	17	0	17	n	0.11	4	33	4	33	y	0.02	1	40	1	40	n	0.09	3	29	3	29	y	ENSMUSG00000033767.15	Tmem131l	chr3	protein_coding	transmembrane 131 like
known_NIR_12323	chr3	83813732	83817676	-	83813732;83816641	83816459;83817676	ES	ENSMUST00000191758.6	known	0.24	5	15.5	5	16;15	y	0.04	1	23.0	1	24;22	n	0.22	1	3.5	1	2;5	n	0.09	2	21.5	2	18;25	y	0.04	1	22.0	1	22;22	n	0.38	3	5.0	3	1;9	n	0.17	4	19.0	4	22;16	y	0.00	0	6.0	0	6;6	n	0.00	0	19.0	0	17;21	n	0.12	4	30.5	4	33;28	y	0.02	1	40.0	1	40;40	n	0.11	3	25.0	3	29;21	y	ENSMUSG00000033767.15	Tmem131l	chr3	protein_coding	transmembrane 131 like
known_NIR_12324	chr3	83820692	83826758	-	83820695	83826758	A3SS	ENSMUST00000191758.6	known	0.12	2	14	2	14	y	0.21	5	19	5	19	y	0.00	0	8	0	8	n	0.04	1	26	1	26	n	0.00	0	26	0	26	n	0.00	0	6	0	6	n	0.09	3	31	3	31	y	0.06	1	17	1	17	n	0.07	1	14	1	14	n	0.19	8	35	8	35	y	0.21	7	27	7	27	y	0.22	8	29	8	29	y	ENSMUSG00000033767.15	Tmem131l	chr3	protein_coding	transmembrane 131 like
known_NIR_12325	chr3	83829866	83830255	-	83829869	83830255	A3SS	ENSMUST00000191758.6	known	0.00	0	11	0	11	n	0.07	2	26	2	26	y	0.00	0	7	0	7	n	0.00	0	23	0	23	n	0.00	0	22	0	22	n	0.00	0	5	0	5	n	0.00	0	19	0	19	n	0.00	0	10	0	10	n	0.10	4	37	4	37	y	0.00	0	38	0	38	n	0.00	0	34	0	34	n	0.00	0	33	0	33	n	ENSMUSG00000033767.15	Tmem131l	chr3	protein_coding	transmembrane 131 like
known_NIR_12326	chr3	84165599	84166632	-	84117661	84166632	A3SS	ENSMUST00000107691.8	known	0.43	3	4	3	4	n	1.00	3	0	3	0	n	0.20	3	12	3	12	y	0.62	5	3	5	3	n	0.17	2	10	2	10	y	0.43	3	4	3	4	n	0.40	4	6	4	6	y	0.29	4	10	4	10	y	0.44	4	5	4	5	n	0.30	3	7	3	7	y	0.20	1	4	1	4	n	0.30	3	7	3	7	y	ENSMUSG00000027993.17	Trim2	chr3	protein_coding	tripartite motif-containing 2
known_NIR_12327	chr3	84435105	84436477	-	84435105	84436498	A5SS	ENSMUST00000107687.9	known	0.92	24	2	24	2	y	0.94	17	1	17	1	n	0.95	63	3	63	3	y	1.00	26	0	26	0	n	1.00	34	0	34	0	n	1.00	32	0	32	0	n	0.90	38	4	38	4	y	1.00	29	0	29	0	n	0.94	16	1	16	1	n	0.97	33	1	33	1	n	1.00	21	0	21	0	n	0.90	26	3	26	3	y	ENSMUSG00000074513.10	Arfip1	chr3	protein_coding	ADP-ribosylation factor interacting protein 1
known_NIR_12328	chr3	84435105;84436572	84436477;84441894	-	84435105	84441894	cassetteExon	ENSMUST00000098990.10	known	1.00	20.0	0	24;16	0	n	1.00	19.0	0	17;21	0	n	0.90	60.5	7	63;58	7	y	0.97	29.0	1	26;32	1	n	0.88	30.0	4	34;26	4	y	0.94	30.0	2	32;28	2	y	0.92	35.5	3	38;33	3	y	0.91	30.5	3	29;32	3	y	0.94	16.5	1	16;17	1	n	0.91	31.5	3	33;30	3	y	0.90	19.0	2	21;17	2	y	0.96	24.5	1	26;23	1	n	ENSMUSG00000074513.10	Arfip1	chr3	protein_coding	ADP-ribosylation factor interacting protein 1
known_NIR_12329	chr3	84435105;84436572	84436498;84441894	-	84435105	84441894	cassetteExon	ENSMUST00000098990.10	known	1.00	9.0	0	2;16	0	n	1.00	11.0	0	1;21	0	n	0.81	30.5	7	3;58	7	y	0.94	16.0	1	0;32	1	n	0.76	13.0	4	0;26	4	n	0.88	14.0	2	0;28	2	n	0.86	18.5	3	4;33	3	y	0.84	16.0	3	0;32	3	n	0.90	9.0	1	1;17	1	n	0.84	15.5	3	1;30	3	n	0.81	8.5	2	0;17	2	n	0.93	13.0	1	3;23	1	n	ENSMUSG00000074513.10	Arfip1	chr3	protein_coding	ADP-ribosylation factor interacting protein 1
known_NIR_12330	chr3	84771318	84810808	+	84771318;84771507	84771444;84810808	ES	ENSMUST00000107679.8	known	0.36	2	3.5	2	3;4	n	0.36	2	3.5	2	2;5	n	0.54	10	8.5	10	9;8	y	0.67	3	1.5	3	2;1	n	0.55	6	5.0	6	7;3	y	0.73	4	1.5	4	1;2	n	0.00	0	4.5	0	5;4	n	0.84	8	1.5	8	0;3	n	0.57	4	3.0	4	4;2	y	0.30	3	7.0	3	6;8	y	0.33	1	2.0	1	3;1	n	0.22	2	7.0	2	10;4	y	ENSMUSG00000028086.16	Fbxw7	chr3	protein_coding	F-box and WD-40 domain protein 7
known_NIR_12331	chr3	85509280	85511761	+	85509280	85511688	A3SS	ENSMUST00000107672.8	known	0.00	0	41	0	41	n	0.00	0	47	0	47	n	0.00	0	35	0	35	n	0.00	0	88	0	88	n	0.03	2	69	2	69	y	0.00	0	23	0	23	n	0.03	2	70	2	70	y	0.00	0	38	0	38	n	0.00	0	64	0	64	n	0.01	1	99	1	99	n	0.00	0	75	0	75	n	0.00	0	76	0	76	n	ENSMUSG00000028085.13	Gatb	chr3	protein_coding	glutamyl-tRNA(Gln) amidotransferase, subunit B
known_NIR_12332	chr3	85779497	85794434	-	85724598	85794434	A3SS	ENSMUST00000154148.8	known	0.57	4	3	4	3	n	0.77	10	3	10	3	y	0.48	13	14	13	14	y	0.50	5	5	5	5	y	0.53	9	8	9	8	y	0.40	4	6	4	6	y	0.57	13	10	13	10	y	0.44	4	5	4	5	n	0.50	5	5	5	5	y	0.47	7	8	7	8	y	1.00	3	0	3	0	n	0.50	7	7	7	7	y	ENSMUSG00000102805.6	Gm37240	chr3	protein_coding	predicted gene, 37240
known_NIR_12333	chr3	85982495;85986291	85986252;85987702	+	85982495	85987702	cassetteExon	ENSMUST00000238443.2	known	0.26	6.0	17	8;4	17	y	0.33	6.5	13	7;6	13	y	0.23	7.0	24	6;8	24	y	0.25	13.0	40	10;16	40	y	0.30	11.0	26	7;15	26	y	0.16	3.5	18	3;4	18	y	0.46	13.5	16	13;14	16	y	0.40	10.0	15	5;15	15	y	0.21	7.0	27	6;8	27	y	0.23	14.0	46	14;14	46	y	0.23	6.0	20	6;6	20	y	0.23	11.5	39	12;11	39	y	ENSMUSG00000028082.15	Sh3d19	chr3	protein_coding	SH3 domain protein D19
known_NIR_12334	chr3	86904923	86905379	-	86904923	86906054	A5SS	ENSMUST00000063869.11	known	1.00	657	2	657	2	y	0.99	661	4	661	4	y	1.00	482	2	482	2	y	1.00	792	0	792	0	n	1.00	1015	2	1015	2	y	0.99	348	3	348	3	y	1.00	1096	1	1096	1	n	1.00	461	2	461	2	y	1.00	701	0	701	0	n	1.00	1191	3	1191	3	y	1.00	719	1	719	1	n	1.00	824	1	824	1	n	ENSMUSG00000028076.13	Cd1d1	chr3	protein_coding	CD1d1 antigen
known_NIR_12335	chr3	87432966	87434565	+	87432966	87434568	A3SS	ENSMUST00000119109.8	known	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.80	4	1	4	1	n	0.80	8	2	8	2	y	0.33	3	6	3	6	n	0.67	4	2	4	2	n	0.86	6	1	6	1	n	0.00	0	2	0	2	n	0.60	3	2	3	2	n	0.80	4	1	4	1	n	0.50	1	1	1	1	n	0.33	1	2	1	2	n	ENSMUSG00000003382.19	Etv3	chr3	protein_coding	ets variant 3
known_NIR_12336	chr3	87596157	87604652	+	87596157;87602824	87602705;87604652	ES	ENSMUST00000136072.8	known	0.48	6	6.5	6	6;7	y	0.67	5	2.5	5	5;0	n	0.76	22	7.0	22	5;9	y	0.59	12	8.5	12	6;11	y	0.65	18	9.5	18	9;10	y	0.69	11	5.0	11	6;4	y	0.40	5	7.5	5	8;7	y	0.84	8	1.5	8	1;2	n	0.57	6	4.5	6	6;3	y	0.56	19	15.0	19	11;19	y	0.52	7	6.5	7	7;6	y	0.51	11	10.5	11	7;14	y	ENSMUSG00000041977.19	Arhgef11	chr3	protein_coding	Rho guanine nucleotide exchange factor (GEF) 11
known_NIR_12337	chr3	87624481	87624728	+	87624481	87624731	A3SS	ENSMUST00000039476.15	known	0.71	15	6	15	6	y	0.68	13	6	13	6	y	0.65	20	11	20	11	y	0.69	27	12	27	12	y	0.46	25	29	25	29	y	0.65	17	9	17	9	y	0.73	19	7	19	7	y	0.55	12	10	12	10	y	0.67	10	5	10	5	y	0.54	20	17	20	17	y	0.86	12	2	12	2	y	0.48	23	25	23	25	y	ENSMUSG00000041977.19	Arhgef11	chr3	protein_coding	Rho guanine nucleotide exchange factor (GEF) 11
known_NIR_12338	chr3	87624827;87625565	87625536;87629664	+	87624827	87629664	cassetteExon	ENSMUST00000039476.15	known	0.68	19.0	9	16;22	9	y	0.43	9.0	12	10;8	12	y	0.56	17.5	14	16;19	14	y	0.47	19.5	22	18;21	22	y	0.70	36.5	16	38;35	16	y	0.52	15.0	14	18;12	14	y	0.52	11.0	10	10;12	10	y	0.58	15.5	11	15;16	11	y	0.68	19.0	9	18;20	9	y	0.68	25.5	12	29;22	12	y	0.55	12.0	10	9;15	10	y	0.67	30.0	15	28;32	15	y	ENSMUSG00000041977.19	Arhgef11	chr3	protein_coding	Rho guanine nucleotide exchange factor (GEF) 11
known_NIR_12339	chr3	87669588;87670665	87670567;87676185	-	87669588	87676185	cassetteExon	ENSMUST00000174759.8	known	0.50	1.0	1	1;1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2.0	0	0;4	0	n	1.00	5.0	0	4;6	0	n	1.00	1.0	0	1;1	0	n	1.00	2.5	0	1;4	0	n	0.56	2.5	2	3;2	2	n	1.00	1.0	0	1;1	0	n	1.00	1.5	0	1;2	0	n	1.00	2.0	0	1;3	0	n	0.67	4.0	2	5;3	2	y	ENSMUSG00000028073.16	Pear1	chr3	protein_coding	platelet endothelial aggregation receptor 1
known_NIR_12340	chr3	87814472	87820398	+	87814021	87820398	A5SS	ENSMUST00000005017.15	known	0.08	21	256	21	256	y	0.08	18	202	18	202	y	0.05	13	251	13	251	y	0.06	20	313	20	313	y	0.07	21	277	21	277	y	0.05	7	145	7	145	y	0.08	23	263	23	263	y	0.06	12	173	12	173	y	0.08	19	213	19	213	y	0.11	44	357	44	357	y	0.07	19	254	19	254	y	0.08	29	351	29	351	y	ENSMUSG00000004897.17	Hdgf	chr3	protein_coding	heparin binding growth factor
known_NIR_12341	chr3	87814874	87820398	+	87814021	87820398	A5SS	ENSMUST00000005017.15	known	0.00	0	256	0	256	n	0.00	0	202	0	202	n	0.00	0	251	0	251	n	0.00	0	313	0	313	n	0.01	3	277	3	277	y	0.00	0	145	0	145	n	0.00	1	263	1	263	n	0.00	0	173	0	173	n	0.00	0	213	0	213	n	0.00	1	357	1	357	n	0.00	0	254	0	254	n	0.00	0	351	0	351	n	ENSMUSG00000004897.17	Hdgf	chr3	protein_coding	heparin binding growth factor
known_NIR_12342	chr3	87814874	87820398	+	87814472	87820398	A5SS	ENSMUST00000159492.8	known	0.00	0	21	0	21	n	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.00	0	20	0	20	n	0.12	3	21	3	21	y	0.00	0	7	0	7	n	0.04	1	23	1	23	n	0.00	0	12	0	12	n	0.00	0	19	0	19	n	0.02	1	44	1	44	n	0.00	0	19	0	19	n	0.00	0	29	0	29	n	ENSMUSG00000004897.17	Hdgf	chr3	protein_coding	heparin binding growth factor
known_NIR_12343	chr3	87820758;87821217	87821148;87821359	+	87820758	87821359	cassetteExon	ENSMUST00000005017.15	known	0.02	7.0	311	5;9	311	y	0.03	7.5	288	6;9	288	y	0.02	6.0	304	6;6	304	y	0.05	16.5	326	18;15	326	y	0.03	12.5	398	10;15	398	y	0.03	6.5	189	7;6	189	y	0.04	16.5	396	18;15	396	y	0.02	3.5	187	2;5	187	y	0.05	15.0	299	13;17	299	y	0.03	18.0	500	13;23	500	y	0.03	13.5	386	12;15	386	y	0.04	17.5	453	16;19	453	y	ENSMUSG00000004897.17	Hdgf	chr3	protein_coding	heparin binding growth factor
known_NIR_12344	chr3	87826958	87827110	+	87827012	87827110	A5SS	ENSMUST00000137775.2	known	0.16	4	21	4	21	y	0.16	7	38	7	38	y	0.32	23	48	23	48	y	0.32	7	15	7	15	y	0.38	18	30	18	30	y	0.33	11	22	11	22	y	0.22	7	25	7	25	y	0.18	3	14	3	14	y	0.18	4	18	4	18	y	0.45	15	18	15	18	y	0.26	7	20	7	20	y	0.33	12	24	12	24	y	ENSMUSG00000019710.14	Mrpl24	chr3	protein_coding	mitochondrial ribosomal protein L24
known_NIR_12345	chr3	87826958	87829124	+	87826958	87827110	3pMXE	ENSMUST00000152287.2	known	0.89	33	4	33	4	y	0.78	25	7	25	7	y	0.53	26	23	26	23	y	0.78	25	7	25	7	y	0.71	45	18	45	18	y	0.69	24	11	24	11	y	0.86	42	7	42	7	y	0.88	22	3	22	3	y	0.82	18	4	18	4	y	0.67	31	15	31	15	y	0.74	20	7	20	7	y	0.73	33	12	33	12	y	ENSMUSG00000019710.14	Mrpl24	chr3	protein_coding	mitochondrial ribosomal protein L24
known_NIR_12346	chr3	87826958	87829124	+	87827012	87829124	A5SS	ENSMUST00000019854.13	known	0.33	33	67	33	67	y	0.31	25	56	25	56	y	0.25	26	77	26	77	y	0.33	25	51	25	51	y	0.49	45	46	45	46	y	0.35	24	45	24	45	y	0.35	42	77	42	77	y	0.28	22	56	22	56	y	0.30	18	42	18	42	y	0.32	31	67	31	67	y	0.22	20	73	20	73	y	0.36	33	59	33	59	y	ENSMUSG00000019710.14	Mrpl24	chr3	protein_coding	mitochondrial ribosomal protein L24
known_NIR_12347	chr3	87826958	87829124	+	87827135	87829124	A5SS	ENSMUST00000119968.8	known	0.19	33	140	33	140	y	0.13	25	173	25	173	y	0.12	26	193	26	193	y	0.14	25	157	25	157	y	0.22	45	160	45	160	y	0.19	24	105	24	105	y	0.22	42	149	42	149	y	0.21	22	83	22	83	y	0.12	18	138	18	138	y	0.13	31	211	31	211	y	0.10	20	179	20	179	y	0.16	33	175	33	175	y	ENSMUSG00000019710.14	Mrpl24	chr3	protein_coding	mitochondrial ribosomal protein L24
known_NIR_12348	chr3	87826958;87827135	87827110;87829124	+	87826958	87829124	cassetteExon	ENSMUST00000121920.8	known	0.69	72.0	33	4;140	33	y	0.78	90.0	25	7;173	25	y	0.81	108.0	26	23;193	26	y	0.77	82.0	25	7;157	25	y	0.66	89.0	45	18;160	45	y	0.71	58.0	24	11;105	24	y	0.65	78.0	42	7;149	42	y	0.66	43.0	22	3;83	22	y	0.80	71.0	18	4;138	18	y	0.78	113.0	31	15;211	31	y	0.82	93.0	20	7;179	20	y	0.74	93.5	33	12;175	33	y	ENSMUSG00000019710.14	Mrpl24	chr3	protein_coding	mitochondrial ribosomal protein L24
known_NIR_12349	chr3	87827012	87829124	+	87827135	87829124	A5SS	ENSMUST00000119968.8	known	0.32	67	140	67	140	y	0.24	56	173	56	173	y	0.29	77	193	77	193	y	0.25	51	157	51	157	y	0.22	46	160	46	160	y	0.30	45	105	45	105	y	0.34	77	149	77	149	y	0.40	56	83	56	83	y	0.23	42	138	42	138	y	0.24	67	211	67	211	y	0.29	73	179	73	179	y	0.25	59	175	59	175	y	ENSMUSG00000019710.14	Mrpl24	chr3	protein_coding	mitochondrial ribosomal protein L24
known_NIR_12350	chr3	87827012;87827135	87827110;87829124	+	87827012	87829124	cassetteExon	ENSMUST00000019854.13	known	0.55	80.5	67	21;140	67	y	0.65	105.5	56	38;173	56	y	0.61	120.5	77	48;193	77	y	0.63	86.0	51	15;157	51	y	0.67	95.0	46	30;160	46	y	0.59	63.5	45	22;105	45	y	0.53	87.0	77	25;149	77	y	0.46	48.5	56	14;83	56	y	0.65	78.0	42	18;138	42	y	0.63	114.5	67	18;211	67	y	0.58	99.5	73	20;179	73	y	0.63	99.5	59	24;175	59	y	ENSMUSG00000019710.14	Mrpl24	chr3	protein_coding	mitochondrial ribosomal protein L24
known_NIR_12351	chr3	87831835	87832199	-	87831835	87832254	A5SS	ENSMUST00000005016.16	known	0.40	2	3	2	3	n	0.33	2	4	2	4	n	0.00	0	10	0	10	n	0.20	1	4	1	4	n	0.26	5	14	5	14	y	0.00	0	7	0	7	n	0.40	2	3	2	3	n	0.25	1	3	1	3	n	0.08	1	12	1	12	n	0.20	2	8	2	8	y	0.27	3	8	3	8	y	0.00	0	7	0	7	n	ENSMUSG00000004896.17	Rrnad1	chr3	protein_coding	ribosomal RNA adenine dimethylase domain containing 1
known_NIR_12352	chr3	87834181	87834870	-	87834181;87834424	87834362;87834870	ES	ENSMUST00000160648.8	known	0.00	0	19.5	0	17;22	n	0.15	2	11.0	2	10;12	y	0.08	2	22.5	2	23;22	y	0.08	2	22.5	2	22;23	y	0.20	5	20.0	5	17;23	y	0.12	1	7.0	1	6;8	n	0.11	2	17.0	2	17;17	y	0.06	1	14.5	1	12;17	n	0.00	0	20.0	0	20;20	n	0.08	2	22.0	2	19;25	y	0.00	0	15.5	0	13;18	n	0.05	1	20.5	1	21;20	n	ENSMUSG00000004896.17	Rrnad1	chr3	protein_coding	ribosomal RNA adenine dimethylase domain containing 1
known_NIR_12353	chr3	87834181	87834870	-	87834424	87834870	A3SS	ENSMUST00000168070.2	known	0.00	0	22	0	22	n	0.14	2	12	2	12	y	0.08	2	22	2	22	y	0.08	2	23	2	23	y	0.18	5	23	5	23	y	0.11	1	8	1	8	n	0.11	2	17	2	17	y	0.06	1	17	1	17	n	0.00	0	20	0	20	n	0.07	2	25	2	25	y	0.00	0	18	0	18	n	0.05	1	20	1	20	n	ENSMUSG00000004896.17	Rrnad1	chr3	protein_coding	ribosomal RNA adenine dimethylase domain containing 1
known_NIR_12354	chr3	87835062	87835231	-	87835022	87835231	A3SS	ENSMUST00000160648.8	known	0.67	6	3	6	3	n	1.00	11	0	11	0	n	0.82	9	2	9	2	y	0.56	5	4	5	4	n	0.62	8	5	8	5	y	0.73	8	3	8	3	y	0.50	3	3	3	3	n	1.00	5	0	5	0	n	0.20	1	4	1	4	n	0.50	6	6	6	6	y	1.00	6	0	6	0	n	0.50	4	4	4	4	n	ENSMUSG00000004896.17	Rrnad1	chr3	protein_coding	ribosomal RNA adenine dimethylase domain containing 1
known_NIR_12355	chr3	87835355	87837751	-	87835355	87837163	5pMXE	ENSMUST00000160648.8	known	0.10	1	9	1	9	n	0.17	1	5	1	5	n	0.44	4	5	4	5	n	0.14	2	12	2	12	y	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.40	4	6	4	6	y	0.00	0	8	0	8	n	0.00	0	6	0	6	n	ENSMUSG00000004896.17	Rrnad1	chr3	protein_coding	ribosomal RNA adenine dimethylase domain containing 1
known_NIR_12356	chr3	87950486;87950908	87950774;87958469	+	87950486	87958469	cassetteExon	ENSMUST00000029707.13	known	0.07	1.0	14	1;1	14	n	0.12	2.0	15	1;3	15	n	0.05	2.0	39	2;2	39	y	0.07	1.0	13	1;1	13	n	0.16	3.5	18	2;5	18	y	0.14	2.5	16	2;3	16	y	0.10	3.0	27	4;2	27	y	0.02	0.5	22	1;0	22	n	0.02	0.5	21	1;0	21	n	0.00	0.0	12	0;0	12	n	0.02	0.5	20	0;1	20	n	0.04	1.0	23	1;1	23	n	ENSMUSG00000028069.17	Gpatch4	chr3	protein_coding	G patch domain containing 4
known_NIR_12357	chr3	88063832;88065662	88065528;88066429	+	88063832;88065478	88065341;88066429	MXE	ENSMUST00000001455.13	known	0.00	0.0	15.0	0;0	13;17	n	0.00	0.0	22.5	0;0	25;20	n	0.00	0.0	52.5	0;0	51;54	n	0.00	0.0	26.0	0;0	33;19	n	0.00	0.0	25.0	0;0	32;18	n	0.00	0.0	22.5	0;0	26;19	n	0.34	15.0	29.0	15;15	33;25	y	0.06	1.5	25.0	3;0	21;29	n	0.00	0.0	15.0	0;0	11;19	n	0.05	1.5	27.5	3;0	27;28	n	0.03	0.5	14.0	1;0	15;13	n	0.00	0.0	23.5	0;0	28;19	n	ENSMUSG00000001419.18	Mef2d	chr3	protein_coding	myocyte enhancer factor 2D
known_NIR_12358	chr3	88068688;88069108	88069088;88070265	+	88068688	88070265	cassetteExon	ENSMUST00000001455.13	known	0.00	0.0	15	0;0	15	n	0.00	0.0	15	0;0	15	n	0.00	0.0	57	0;0	57	n	0.00	0.0	20	0;0	20	n	0.00	0.0	28	0;0	28	n	0.08	1.5	17	1;2	17	n	0.47	22.0	25	22;22	25	y	0.00	0.0	15	0;0	15	n	0.00	0.0	12	0;0	12	n	0.00	0.0	22	0;0	22	n	0.06	1.0	15	1;1	15	n	0.00	0.0	29	0;0	29	n	ENSMUSG00000001419.18	Mef2d	chr3	protein_coding	myocyte enhancer factor 2D
known_NIR_12359	chr3	88075041	88075939	+	88075041	88075345	A3SS	ENSMUST00000119251.8	known	0.00	0	20	0	20	n	0.05	1	18	1	18	n	0.00	0	59	0	59	n	0.09	2	20	2	20	y	0.06	2	30	2	30	y	0.00	0	22	0	22	n	0.03	2	70	2	70	y	0.00	0	19	0	19	n	0.00	0	17	0	17	n	0.00	0	41	0	41	n	0.07	1	14	1	14	n	0.04	1	27	1	27	n	ENSMUSG00000001419.18	Mef2d	chr3	protein_coding	myocyte enhancer factor 2D
known_NIR_12360	chr3	88075041	88075939	+	88075041;88075651	88075345;88075939	ES	ENSMUST00000001455.13	known	0.00	0	14.5	0	20;9	n	0.07	1	12.5	1	18;7	n	0.00	0	47.0	0	59;35	n	0.09	2	20.5	2	20;21	y	0.07	2	27.5	2	30;25	y	0.00	0	18.5	0	22;15	n	0.04	2	45.5	2	70;21	y	0.00	0	20.5	0	19;22	n	0.00	0	13.0	0	17;9	n	0.00	0	28.5	0	41;16	n	0.08	1	12.0	1	14;10	n	0.04	1	23.0	1	27;19	n	ENSMUSG00000001419.18	Mef2d	chr3	protein_coding	myocyte enhancer factor 2D
known_NIR_12361	chr3	88075765	88075939	+	88075651	88075939	A5SS	ENSMUST00000001455.13	known	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	35	0	35	n	0.05	1	21	1	21	n	0.00	0	25	0	25	n	0.12	2	15	2	15	y	0.00	0	21	0	21	n	0.00	0	22	0	22	n	0.00	0	9	0	9	n	0.00	0	16	0	16	n	0.00	0	10	0	10	n	0.00	0	19	0	19	n	ENSMUSG00000001419.18	Mef2d	chr3	protein_coding	myocyte enhancer factor 2D
known_NIR_12362	chr3	88202757	88204070	-	88202757	88204131	A5SS	ENSMUST00000107556.10	known	0.00	0	36	0	36	n	0.00	0	22	0	22	n	0.00	0	21	0	21	n	0.00	0	15	0	15	n	0.03	1	32	1	32	n	0.00	0	10	0	10	n	0.07	2	25	2	25	y	0.00	0	15	0	15	n	0.00	0	23	0	23	n	0.00	0	25	0	25	n	0.00	0	22	0	22	n	0.00	0	26	0	26	n	ENSMUSG00000010538.15	Tsacc	chr3	protein_coding	TSSK6 activating co-chaperone
known_NIR_12363	chr3	88216654	88220549	+	88216654	88218980	A3SS&ES	ENSMUST00000167000.8	known	0.00	0	229	0	229	n	0.00	0	178	0	178	n	0.00	0	288	0	288	n	0.00	0	288	0	288	n	0.00	0	284	0	284	n	0.00	0	89	0	89	n	0.00	0	252	0	252	n	0.00	0	136	0	136	n	0.00	0	188	0	188	n	0.01	2	243	2	243	y	0.00	0	214	0	214	n	0.00	0	237	0	237	n	ENSMUSG00000001416.14	Cct3	chr3	protein_coding	chaperonin containing Tcp1, subunit 3 (gamma)
known_NIR_12364	chr3	88216654	88220549	+	88216654;88219129	88218980;88220549	ES	ENSMUST00000001452.14	known	0.00	0	253.0	0	229;277	n	0.00	0	203.5	0	178;229	n	0.00	0	320.0	0	288;352	n	0.00	0	300.0	0	288;312	n	0.00	0	307.5	0	284;331	n	0.00	0	119.5	0	89;150	n	0.00	0	291.0	0	252;330	n	0.00	0	142.0	0	136;148	n	0.00	0	208.5	0	188;229	n	0.01	2	275.5	2	243;308	y	0.00	0	236.5	0	214;259	n	0.00	0	262.5	0	237;288	n	ENSMUSG00000001416.14	Cct3	chr3	protein_coding	chaperonin containing Tcp1, subunit 3 (gamma)
known_NIR_12365	chr3	88219129	88220398	+	88219129	88220549	A3SS	ENSMUST00000001452.14	known	0.00	0	277	0	277	n	0.00	0	229	0	229	n	0.01	2	352	2	352	y	0.00	0	312	0	312	n	0.00	0	331	0	331	n	0.00	0	150	0	150	n	0.01	2	330	2	330	y	0.01	2	148	2	148	y	0.00	0	229	0	229	n	0.00	0	308	0	308	n	0.00	0	259	0	259	n	0.00	0	288	0	288	n	ENSMUSG00000001416.14	Cct3	chr3	protein_coding	chaperonin containing Tcp1, subunit 3 (gamma)
known_NIR_12366	chr3	88232508	88233238	+	88232508	88232984	A3SS	ENSMUST00000153716.2	known	0.00	0	184	0	184	n	0.00	0	178	0	178	n	0.00	0	257	0	257	n	0.00	0	154	0	154	n	0.01	3	245	3	245	y	0.00	0	126	0	126	n	0.00	0	257	0	257	n	0.00	0	147	0	147	n	0.01	2	154	2	154	y	0.00	0	216	0	216	n	0.00	0	182	0	182	n	0.00	0	215	0	215	n	ENSMUSG00000001418.14	Glmp	chr3	protein_coding	glycosylated lysosomal membrane protein
known_NIR_12367	chr3	88232508	88233422	+	88232508	88232984	A3SS	ENSMUST00000153716.2	known	0.00	0	184	0	184	n	0.01	2	178	2	178	y	0.00	0	257	0	257	n	0.01	2	154	2	154	y	0.00	0	245	0	245	n	0.00	0	126	0	126	n	0.00	0	257	0	257	n	0.00	0	147	0	147	n	0.00	0	154	0	154	n	0.00	0	216	0	216	n	0.00	0	182	0	182	n	0.00	0	215	0	215	n	ENSMUSG00000001418.14	Glmp	chr3	protein_coding	glycosylated lysosomal membrane protein
known_NIR_12368	chr3	88232508	88233422	+	88232508;88233238	88232984;88233422	ES	ENSMUST00000177005.8	known	0.00	0	193.0	0	184;202	n	0.01	2	190.0	2	178;202	y	0.00	0	245.0	0	257;233	n	0.01	2	178.5	2	154;203	y	0.00	0	270.5	0	245;296	n	0.00	0	150.0	0	126;174	n	0.00	0	257.5	0	257;258	n	0.00	0	153.5	0	147;160	n	0.00	0	142.5	0	154;131	n	0.00	0	236.5	0	216;257	n	0.00	0	187.5	0	182;193	n	0.00	0	233.0	0	215;251	n	ENSMUSG00000001418.14	Glmp	chr3	protein_coding	glycosylated lysosomal membrane protein
known_NIR_12369	chr3	88233322	88233422	+	88233238	88233422	A5SS	ENSMUST00000177005.8	known	0.00	0	202	0	202	n	0.00	0	202	0	202	n	0.04	9	233	9	233	y	0.00	0	203	0	203	n	0.00	0	296	0	296	n	0.03	5	174	5	174	y	0.04	11	258	11	258	y	0.00	0	160	0	160	n	0.08	12	131	12	131	y	0.00	0	257	0	257	n	0.00	0	193	0	193	n	0.00	0	251	0	251	n	ENSMUSG00000001418.14	Glmp	chr3	protein_coding	glycosylated lysosomal membrane protein
known_NIR_12370	chr3	88235420	88235483	+	88235420	88235510	A3SS	ENSMUST00000177005.8	known	0.00	0	234	0	234	n	0.00	1	273	1	273	n	0.00	1	298	1	298	n	0.00	0	202	0	202	n	0.00	0	310	0	310	n	0.00	0	162	0	162	n	0.01	2	301	2	301	y	0.01	1	164	1	164	n	0.00	0	209	0	209	n	0.00	0	269	0	269	n	0.00	0	252	0	252	n	0.00	0	268	0	268	n	ENSMUSG00000001418.14	Glmp	chr3	protein_coding	glycosylated lysosomal membrane protein
known_NIR_12371	chr3	88254903	88256418	+	88254903	88256449	A3SS	ENSMUST00000001451.11	known	0.02	1	41	1	41	n	0.16	4	21	4	21	y	0.05	4	79	4	79	y	0.09	3	30	3	30	y	0.06	3	48	3	48	y	0.00	0	32	0	32	n	0.02	1	45	1	45	n	0.10	2	19	2	19	y	0.07	3	42	3	42	y	0.08	4	49	4	49	y	0.12	3	23	3	23	y	0.05	2	42	2	42	y	ENSMUSG00000001415.11	Smg5	chr3	protein_coding	Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)
known_NIR_12372	chr3	88301877;88303117	88303021;88303212	-	88301877	88303212	cassetteExon	ENSMUST00000193338.6	known	0.13	5.0	34	7;3	34	y	0.13	4.5	31	4;5	31	y	0.12	2.0	14	2;2	14	y	0.16	5.5	29	6;5	29	y	0.11	5.5	44	5;6	44	y	0.16	3.5	19	5;2	19	y	0.04	2.0	46	4;0	46	n	0.03	0.5	17	0;1	17	n	0.20	6.0	24	4;8	24	y	0.15	9.5	54	10;9	54	y	0.16	7.5	40	9;6	40	y	0.21	6.5	25	9;4	25	y	ENSMUSG00000028066.16	Pmf1	chr3	protein_coding	polyamine-modulated factor 1
known_NIR_12373	chr3	88303407	88306442	-	88303407	88317463	A5SS	ENSMUST00000193338.6	known	0.97	58	2	58	2	y	0.82	33	7	33	7	y	1.00	27	0	27	0	n	0.93	56	4	56	4	y	0.96	55	2	55	2	y	1.00	17	0	17	0	n	0.98	65	1	65	1	n	1.00	13	0	13	0	n	1.00	42	0	42	0	n	0.94	82	5	82	5	y	0.90	55	6	55	6	y	0.92	70	6	70	6	y	ENSMUSG00000028066.16	Pmf1	chr3	protein_coding	polyamine-modulated factor 1
known_NIR_12374	chr3	88306611	88307018	-	88306542	88307018	A3SS	ENSMUST00000056370.13	known	0.00	0	62	0	62	n	0.00	0	62	0	62	n	0.00	0	28	0	28	n	0.00	0	48	0	48	n	0.00	0	50	0	50	n	0.00	0	24	0	24	n	0.00	0	68	0	68	n	0.00	0	23	0	23	n	0.00	0	49	0	49	n	0.00	0	84	0	84	n	0.04	2	49	2	49	y	0.00	0	72	0	72	n	ENSMUSG00000028066.16	Pmf1	chr3	protein_coding	polyamine-modulated factor 1
known_NIR_12375	chr3	88307123	88317463	-	88303407	88317463	A3SS	ENSMUST00000193338.6	known	0.97	62	2	62	2	y	0.91	68	7	68	7	y	1.00	38	0	38	0	n	0.95	71	4	71	4	y	0.97	64	2	64	2	y	1.00	39	0	39	0	n	0.99	80	1	80	1	n	1.00	34	0	34	0	n	1.00	62	0	62	0	n	0.95	91	5	91	5	y	0.92	68	6	68	6	y	0.92	71	6	71	6	y	ENSMUSG00000028066.16	Pmf1	chr3	protein_coding	polyamine-modulated factor 1
known_NIR_12376	chr3	88320204;88323422	88323295;88327808	-	88320204	88327808	cassetteExon	ENSMUST00000168755.7	known	0.98	65.0	1	67;63	1	n	0.96	47.0	2	53;41	2	y	1.00	80.0	0	97;63	0	n	1.00	90.0	0	88;92	0	n	1.00	119.5	0	133;106	0	n	1.00	43.5	0	48;39	0	n	0.99	93.0	1	81;105	1	n	0.94	67.5	4	73;62	4	y	0.99	97.0	1	102;92	1	n	0.99	102.0	1	110;94	1	n	1.00	81.5	0	85;78	0	n	0.99	96.0	1	95;97	1	n	ENSMUSG00000050144.14	Slc25a44	chr3	protein_coding	solute carrier family 25, member 44
known_NIR_12377	chr3	88328445	88332081	-	88328445	88332035	A5SS	ENSMUST00000168755.7	known	0.16	9	46	9	46	y	0.33	13	27	13	27	y	0.17	11	52	11	52	y	0.19	16	68	16	68	y	0.18	15	69	15	69	y	0.19	7	29	7	29	y	0.23	17	58	17	58	y	0.12	7	52	7	52	y	0.23	15	49	15	49	y	0.29	31	76	31	76	y	0.16	9	47	9	47	y	0.16	11	57	11	57	y	ENSMUSG00000050144.14	Slc25a44	chr3	protein_coding	solute carrier family 25, member 44
known_NIR_12378	chr3	88328445	88332081	-	88328445	88332153	A5SS	ENSMUST00000193433.6	known	0.69	9	4	9	4	y	0.57	13	10	13	10	y	0.79	11	3	11	3	y	0.67	16	8	16	8	y	0.54	15	13	15	13	y	0.58	7	5	7	5	y	0.61	17	11	17	11	y	0.58	7	5	7	5	y	0.52	15	14	15	14	y	0.53	31	28	31	28	y	0.64	9	5	9	5	y	0.48	11	12	11	12	y	ENSMUSG00000050144.14	Slc25a44	chr3	protein_coding	solute carrier family 25, member 44
known_NIR_12379	chr3	88328445	88332153	-	88328445	88332035	A5SS	ENSMUST00000168755.7	known	0.08	4	46	4	46	y	0.27	10	27	10	27	y	0.05	3	52	3	52	y	0.11	8	68	8	68	y	0.16	13	69	13	69	y	0.15	5	29	5	29	y	0.16	11	58	11	58	y	0.09	5	52	5	52	y	0.22	14	49	14	49	y	0.27	28	76	28	76	y	0.10	5	47	5	47	y	0.17	12	57	12	57	y	ENSMUSG00000050144.14	Slc25a44	chr3	protein_coding	solute carrier family 25, member 44
known_NIR_12380	chr3	88358757	88359327	-	88358757;88359093	88358995;88359327	ES	ENSMUST00000029700.12	known	0.00	0	139.0	0	154;124	n	0.00	0	110.5	0	118;103	n	0.00	0	119.0	0	107;131	n	0.00	0	188.5	0	219;158	n	0.00	0	222.5	0	232;213	n	0.00	0	85.0	0	92;78	n	0.00	0	169.0	0	199;139	n	0.00	0	99.0	0	98;100	n	0.00	0	139.0	0	157;121	n	0.00	0	225.0	0	264;186	n	0.00	0	105.0	0	110;100	n	0.01	2	194.0	2	226;162	y	ENSMUSG00000028064.18	Sema4a	chr3	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
known_NIR_12381	chr3	88358757	88359327	-	88359093	88359327	A3SS&ES	ENSMUST00000184487.8	known	0.00	0	124	0	124	n	0.00	0	103	0	103	n	0.00	0	131	0	131	n	0.00	0	158	0	158	n	0.00	0	213	0	213	n	0.00	0	78	0	78	n	0.00	0	139	0	139	n	0.00	0	100	0	100	n	0.00	0	121	0	121	n	0.00	0	186	0	186	n	0.00	0	100	0	100	n	0.01	2	162	2	162	y	ENSMUSG00000028064.18	Sema4a	chr3	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
known_NIR_12382	chr3	88358774	88358995	-	88358757	88358995	A3SS	ENSMUST00000029700.12	known	0.03	5	154	5	154	y	0.06	7	118	7	118	y	0.04	4	107	4	107	y	0.06	13	219	13	219	y	0.02	4	232	4	232	y	0.00	0	92	0	92	n	0.03	6	199	6	199	y	0.03	3	98	3	98	y	0.02	3	157	3	157	y	0.04	11	264	11	264	y	0.02	2	110	2	110	y	0.03	8	226	8	226	y	ENSMUSG00000028064.18	Sema4a	chr3	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
known_NIR_12383	chr3	88358804	88358995	-	88358757	88358995	A3SS	ENSMUST00000029700.12	known	0.03	4	154	4	154	y	0.01	1	118	1	118	n	0.01	1	107	1	107	n	0.02	5	219	5	219	y	0.02	4	232	4	232	y	0.00	0	92	0	92	n	0.01	3	199	3	199	y	0.03	3	98	3	98	y	0.02	3	157	3	157	y	0.03	7	264	7	264	y	0.02	2	110	2	110	y	0.03	8	226	8	226	y	ENSMUSG00000028064.18	Sema4a	chr3	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
known_NIR_12384	chr3	88358804	88358995	-	88358774	88358995	A3SS	ENSMUST00000184487.8	known	0.44	4	5	4	5	n	0.12	1	7	1	7	n	0.20	1	4	1	4	n	0.28	5	13	5	13	y	0.50	4	4	4	4	n	-	-	-	-	-	-	0.33	3	6	3	6	n	0.50	3	3	3	3	n	0.50	3	3	3	3	n	0.39	7	11	7	11	y	0.50	2	2	2	2	n	0.50	8	8	8	8	y	ENSMUSG00000028064.18	Sema4a	chr3	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
known_NIR_12385	chr3	88362153	88362387	-	88362153	88362855	A5SS	ENSMUST00000029700.12	known	0.01	1	97	1	97	n	0.01	1	87	1	87	n	0.03	3	94	3	94	y	0.02	3	123	3	123	y	0.03	4	153	4	153	y	0.00	0	62	0	62	n	0.04	5	111	5	111	y	0.03	2	56	2	56	y	0.11	10	82	10	82	y	0.06	9	140	9	140	y	0.05	3	53	3	53	y	0.02	3	125	3	125	y	ENSMUSG00000028064.18	Sema4a	chr3	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
known_NIR_12386	chr3	88362153	88362387	-	88362153	88363441	A5SS	ENSMUST00000123753.8	known	0.06	1	17	1	17	n	0.06	1	15	1	15	n	0.17	3	15	3	15	y	0.15	3	17	3	17	y	0.16	4	21	4	21	y	0.00	0	9	0	9	n	0.17	5	24	5	24	y	0.11	2	16	2	16	y	0.31	10	22	10	22	y	0.26	9	26	9	26	y	0.17	3	15	3	15	y	0.08	3	33	3	33	y	ENSMUSG00000028064.18	Sema4a	chr3	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
known_NIR_12387	chr3	88362153	88363441	-	88362153	88362855	5pMXE	ENSMUST00000029700.12	known	0.15	17	97	17	97	y	0.15	15	87	15	87	y	0.14	15	94	15	94	y	0.12	17	123	17	123	y	0.12	21	153	21	153	y	0.13	9	62	9	62	y	0.18	24	111	24	111	y	0.22	16	56	16	56	y	0.21	22	82	22	82	y	0.16	26	140	26	140	y	0.22	15	53	15	53	y	0.21	33	125	33	125	y	ENSMUSG00000028064.18	Sema4a	chr3	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
known_NIR_12388	chr3	88362153	88363441	-	88362153;88362991	88362855;88363441	ES	ENSMUST00000141471.2	known	0.25	17	51.5	17	97;6	y	0.25	15	46.0	15	87;5	y	0.23	15	51.5	15	94;9	y	0.20	17	67.5	17	123;12	y	0.21	21	80.0	21	153;7	y	0.21	9	33.0	9	62;4	y	0.29	24	59.5	24	111;8	y	0.34	16	30.5	16	56;5	y	0.31	22	49.5	22	82;17	y	0.26	26	75.0	26	140;10	y	0.34	15	28.5	15	53;4	y	0.32	33	69.0	33	125;13	y	ENSMUSG00000028064.18	Sema4a	chr3	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
known_NIR_12389	chr3	88362153	88363441	-	88363099	88363441	3pMXE	ENSMUST00000146921.2	known	0.85	17	3	17	3	y	0.94	15	1	15	1	n	0.88	15	2	15	2	y	0.94	17	1	17	1	n	0.88	21	3	21	3	y	0.90	9	1	9	1	n	0.92	24	2	24	2	y	0.94	16	1	16	1	n	1.00	22	0	22	0	n	0.90	26	3	26	3	y	0.83	15	3	15	3	y	0.94	33	2	33	2	y	ENSMUSG00000028064.18	Sema4a	chr3	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
known_NIR_12390	chr3	88362153;88363099	88362855;88363441	-	88362153	88363441	cassetteExon	ENSMUST00000123753.8	known	0.75	50.0	17	97;3	17	y	0.75	44.0	15	87;1	15	n	0.76	48.0	15	94;2	15	y	0.78	62.0	17	123;1	17	n	0.79	78.0	21	153;3	21	y	0.78	31.5	9	62;1	9	n	0.70	56.5	24	111;2	24	y	0.64	28.5	16	56;1	16	n	0.65	41.0	22	82;0	22	n	0.73	71.5	26	140;3	26	y	0.65	28.0	15	53;3	15	y	0.66	63.5	33	125;2	33	y	ENSMUSG00000028064.18	Sema4a	chr3	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
known_NIR_12391	chr3	88363099	88363441	-	88362991	88363441	A3SS	ENSMUST00000141471.2	known	0.33	3	6	3	6	n	0.17	1	5	1	5	n	0.18	2	9	2	9	y	0.08	1	12	1	12	n	0.30	3	7	3	7	y	0.20	1	4	1	4	n	0.20	2	8	2	8	y	0.17	1	5	1	5	n	0.00	0	17	0	17	n	0.23	3	10	3	10	y	0.43	3	4	3	4	n	0.13	2	13	2	13	y	ENSMUSG00000028064.18	Sema4a	chr3	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
known_NIR_12392	chr3	88458092	88460037	-	88458092	88459662	A5SS&ES	ENSMUST00000029698.15	known	0.01	5	422	5	422	y	0.00	0	461	0	461	n	0.00	1	371	1	371	n	0.00	0	402	0	402	n	0.00	1	523	1	523	n	0.00	0	275	0	275	n	0.00	1	542	1	542	n	0.01	2	272	2	272	y	0.00	0	407	0	407	n	0.00	2	597	2	597	y	0.00	2	508	2	508	y	0.00	0	425	0	425	n	ENSMUSG00000028062.16	Lamtor2	chr3	protein_coding	late endosomal/lysosomal adaptor, MAPK and MTOR activator 2
known_NIR_12393	chr3	88458092	88460037	-	88458092;88459824	88459662;88460037	ES	ENSMUST00000119002.2	known	0.02	5	221.5	5	422;21	y	0.00	0	238.5	0	461;16	n	0.01	1	188.0	1	371;5	n	0.00	0	207.5	0	402;13	n	0.00	1	270.5	1	523;18	n	0.00	0	141.0	0	275;7	n	0.00	1	278.5	1	542;15	n	0.01	2	141.0	2	272;10	y	0.00	0	211.0	0	407;15	n	0.01	2	314.5	2	597;32	y	0.01	2	265.0	2	508;22	y	0.00	0	224.0	0	425;23	n	ENSMUSG00000028062.16	Lamtor2	chr3	protein_coding	late endosomal/lysosomal adaptor, MAPK and MTOR activator 2
known_NIR_12394	chr3	88459824	88460037	-	88459824	88460103	A5SS	ENSMUST00000029698.15	known	0.06	21	331	21	331	y	0.04	16	361	16	361	y	0.02	5	326	5	326	y	0.04	13	308	13	308	y	0.04	18	492	18	492	y	0.03	7	236	7	236	y	0.03	15	504	15	504	y	0.04	10	253	10	253	y	0.04	15	358	15	358	y	0.07	32	434	32	434	y	0.05	22	399	22	399	y	0.06	23	389	23	389	y	ENSMUSG00000028062.16	Lamtor2	chr3	protein_coding	late endosomal/lysosomal adaptor, MAPK and MTOR activator 2
known_NIR_12395	chr3	88488345	88491044	+	88488345	88491107	A3SS	ENSMUST00000193934.6	known	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.38	5	8	5	8	y	0.00	0	5	0	5	n	0.00	0	4	0	4	n	1.00	3	0	3	0	n	0.30	3	7	3	7	y	0.20	2	8	2	8	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	ENSMUSG00000041355.14	Ssr2	chr3	protein_coding	signal sequence receptor, beta
known_NIR_12396	chr3	88539640	88540220	+	88539646	88540220	A5SS	ENSMUST00000175903.9	known	0.50	1	1	1	1	n	-	-	-	-	-	-	0.24	5	16	5	16	y	-	-	-	-	-	-	0.33	2	4	2	4	n	0.00	0	2	0	2	n	0.40	2	3	2	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.60	3	2	3	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000028059.17	Arhgef2	chr3	protein_coding	rho/rac guanine nucleotide exchange factor (GEF) 2
known_NIR_12397	chr3	88607315	88607669	+	88607315	88607568	A3SS	ENSMUST00000029696.11	known	0.24	8	26	8	26	y	0.25	10	30	10	30	y	0.13	8	52	8	52	y	0.14	6	38	6	38	y	0.18	12	55	12	55	y	0.31	9	20	9	20	y	0.13	8	55	8	55	y	0.03	1	33	1	33	n	0.17	8	39	8	39	y	0.08	4	46	4	46	y	0.08	4	44	4	44	y	0.11	6	47	6	47	y	ENSMUSG00000028060.15	Khdc4	chr3	protein_coding	KH domain containing 4, pre-mRNA splicing factor
known_NIR_12398	chr3	88607315	88607669	+	88607315	88607672	A3SS	ENSMUST00000198078.2	known	0.53	8	7	8	7	y	0.83	10	2	10	2	y	0.57	8	6	8	6	y	0.38	6	10	6	10	y	0.41	12	17	12	17	y	0.69	9	4	9	4	y	0.50	8	8	8	8	y	0.11	1	8	1	8	n	0.73	8	3	8	3	y	0.29	4	10	4	10	y	0.24	4	13	4	13	y	0.38	6	10	6	10	y	ENSMUSG00000028060.15	Khdc4	chr3	protein_coding	KH domain containing 4, pre-mRNA splicing factor
known_NIR_12399	chr3	88607315	88607672	+	88607315	88607568	A3SS	ENSMUST00000029696.11	known	0.21	7	26	7	26	y	0.06	2	30	2	30	y	0.10	6	52	6	52	y	0.21	10	38	10	38	y	0.24	17	55	17	55	y	0.17	4	20	4	20	y	0.13	8	55	8	55	y	0.20	8	33	8	33	y	0.07	3	39	3	39	y	0.18	10	46	10	46	y	0.23	13	44	13	44	y	0.18	10	47	10	47	y	ENSMUSG00000028060.15	Khdc4	chr3	protein_coding	KH domain containing 4, pre-mRNA splicing factor
known_NIR_12400	chr3	88616248	88617165	+	88616248	88617137	A3SS	ENSMUST00000029696.11	known	0.52	38	35	38	35	y	0.49	23	24	23	24	y	0.58	35	25	35	25	y	0.30	10	23	10	23	y	0.49	36	38	36	38	y	0.69	24	11	24	11	y	0.39	30	47	30	47	y	0.38	16	26	16	26	y	0.54	26	22	26	22	y	0.32	21	44	21	44	y	0.51	18	17	18	17	y	0.38	24	40	24	40	y	ENSMUSG00000028060.15	Khdc4	chr3	protein_coding	KH domain containing 4, pre-mRNA splicing factor
known_NIR_12401	chr3	88624276	88624633	+	88624264	88624633	A5SS	ENSMUST00000029692.15	known	0.00	0	16	0	16	n	0.10	2	19	2	19	y	0.12	4	30	4	30	y	0.08	2	22	2	22	y	0.07	3	37	3	37	y	0.00	0	19	0	19	n	0.08	3	34	3	34	y	0.00	0	13	0	13	n	0.08	2	24	2	24	y	0.10	3	28	3	28	y	0.09	4	39	4	39	y	0.09	3	32	3	32	y	ENSMUSG00000028057.15	Rit1	chr3	protein_coding	Ras-like without CAAX 1
known_NIR_12402	chr3	88624777	88624880	+	88624777	88624909	A3SS	ENSMUST00000029692.15	known	0.18	6	28	6	28	y	0.23	7	23	7	23	y	0.20	18	70	18	70	y	0.26	12	34	12	34	y	0.21	12	46	12	46	y	0.15	5	28	5	28	y	0.30	25	57	25	57	y	0.09	3	29	3	29	y	0.24	12	38	12	38	y	0.30	20	47	20	47	y	0.25	15	45	15	45	y	0.17	11	52	11	52	y	ENSMUSG00000028057.15	Rit1	chr3	protein_coding	Ras-like without CAAX 1
known_NIR_12403	chr3	88777150	88787378	+	88777150;88783237	88783214;88787378	ES	ENSMUST00000107498.9	known	0.91	5	0.5	5	1;0	n	0.67	2	1.0	2	1;1	n	1.00	7	0.0	7	0;0	n	0.84	8	1.5	8	1;2	n	1.00	1	0.0	1	0;0	n	0.50	1	1.0	1	1;1	n	0.00	0	1.0	0	1;1	n	0.80	4	1.0	4	2;0	n	0.53	4	3.5	4	4;3	y	0.62	5	3.0	5	3;3	y	0.80	2	0.5	2	1;0	n	0.75	3	1.0	3	1;1	n	ENSMUSG00000054199.18	Gon4l	chr3	protein_coding	gon-4-like (C.elegans)
known_NIR_12404	chr3	88832718	88834318	-	88832718;88833668	88833579;88834318	ES	ENSMUST00000090938.11	known	0.08	12	135.0	12	143;127	y	0.05	6	125.0	6	120;130	y	0.07	11	141.5	11	141;142	y	0.02	3	129.0	3	128;130	y	0.03	5	160.5	5	155;166	y	0.06	4	66.0	4	78;54	y	0.02	3	156.0	3	157;155	y	0.05	5	87.5	5	87;88	y	0.04	5	119.5	5	127;112	y	0.05	11	196.5	11	212;181	y	0.02	3	163.5	3	171;156	y	0.07	12	171.0	12	152;190	y	ENSMUSG00000068921.15	Dap3	chr3	protein_coding	death associated protein 3
known_NIR_12405	chr3	88834377	88835754	-	88834377;88835674	88835516;88835754	ES	ENSMUST00000090938.11	known	0.00	0	117.5	0	133;102	n	0.00	0	103.0	0	114;92	n	0.03	4	110.5	4	114;107	y	0.05	6	118.5	6	133;104	y	0.00	0	137.5	0	145;130	n	0.00	0	52.0	0	43;61	n	0.00	0	144.0	0	154;134	n	0.03	2	65.5	2	72;59	y	0.01	1	101.5	1	104;99	n	0.02	3	179.5	3	201;158	y	0.01	1	124.0	1	124;124	n	0.01	2	133.0	2	149;117	y	ENSMUSG00000068921.15	Dap3	chr3	protein_coding	death associated protein 3
known_NIR_12406	chr3	88834377	88836703	-	88835834	88836703	3pMXE	ENSMUST00000174077.8	known	0.03	3	89	3	89	y	0.09	9	89	9	89	y	0.13	15	99	15	99	y	0.02	3	122	3	122	y	0.06	8	129	8	129	y	0.07	5	65	5	65	y	0.04	6	140	6	140	y	0.05	3	55	3	55	y	0.04	5	109	5	109	y	0.04	6	146	6	146	y	0.09	10	99	10	99	y	0.02	3	131	3	131	y	ENSMUSG00000068921.15	Dap3	chr3	protein_coding	death associated protein 3
known_NIR_12407	chr3	88834377;88835834	88835516;88836703	-	88834377	88836703	cassetteExon	ENSMUST00000174571.8	known	0.97	111.0	3	133;89	3	y	0.92	101.5	9	114;89	9	y	0.88	106.5	15	114;99	15	y	0.98	127.5	3	133;122	3	y	0.94	137.0	8	145;129	8	y	0.92	54.0	5	43;65	5	y	0.96	147.0	6	154;140	6	y	0.95	63.5	3	72;55	3	y	0.96	106.5	5	104;109	5	y	0.97	173.5	6	201;146	6	y	0.92	111.5	10	124;99	10	y	0.98	140.0	3	149;131	3	y	ENSMUSG00000068921.15	Dap3	chr3	protein_coding	death associated protein 3
known_NIR_12408	chr3	88834377;88835834	88835754;88836703	-	88834377	88836703	cassetteExon	ENSMUST00000174571.8	known	0.94	44.5	3	0;89	3	n	0.83	44.5	9	0;89	9	n	0.77	51.5	15	4;99	15	y	0.96	64.0	3	6;122	3	y	0.89	64.5	8	0;129	8	n	0.87	32.5	5	0;65	5	n	0.92	70.0	6	0;140	6	n	0.90	28.5	3	2;55	3	y	0.92	55.0	5	1;109	5	n	0.93	74.5	6	3;146	6	y	0.83	50.0	10	1;99	10	n	0.96	66.5	3	2;131	3	y	ENSMUSG00000068921.15	Dap3	chr3	protein_coding	death associated protein 3
known_NIR_12409	chr3	88838327	88843456	-	88838327;88840973	88840872;88843456	ES	ENSMUST00000090938.11	known	0.00	0	74.0	0	80;68	n	0.03	2	67.5	2	83;52	y	0.00	0	107.0	0	108;106	n	0.00	0	96.5	0	98;95	n	0.00	0	109.5	0	110;109	n	0.00	0	62.0	0	60;64	n	0.00	0	100.0	0	118;82	n	0.02	1	61.5	1	59;64	n	0.00	0	87.5	0	84;91	n	0.02	2	127.0	2	136;118	y	0.00	0	79.5	0	84;75	n	0.01	1	115.0	1	112;118	n	ENSMUSG00000068921.15	Dap3	chr3	protein_coding	death associated protein 3
known_NIR_12410	chr3	88838327	88843456	-	88840973	88843456	3pMXE	ENSMUST00000174491.2	known	0.00	0	68	0	68	n	0.04	2	52	2	52	y	0.00	0	106	0	106	n	0.00	0	95	0	95	n	0.00	0	109	0	109	n	0.00	0	64	0	64	n	0.00	0	82	0	82	n	0.02	1	64	1	64	n	0.00	0	91	0	91	n	0.02	2	118	2	118	y	0.00	0	75	0	75	n	0.01	1	118	1	118	n	ENSMUSG00000068921.15	Dap3	chr3	protein_coding	death associated protein 3
known_NIR_12411	chr3	88850135	88857423	-	88850135	88857175	A5SS	ENSMUST00000090938.11	known	0.11	7	56	7	56	y	0.18	10	46	10	46	y	0.12	9	66	9	66	y	0.10	9	83	9	83	y	0.13	12	82	12	82	y	0.08	5	54	5	54	y	0.03	3	95	3	95	y	0.05	3	53	3	53	y	0.06	4	63	4	63	y	0.12	15	110	15	110	y	0.07	6	78	6	78	y	0.09	8	78	8	78	y	ENSMUSG00000068921.15	Dap3	chr3	protein_coding	death associated protein 3
known_NIR_12412	chr3	88850135	88857423	-	88850135	88858268	A5SS	ENSMUST00000173135.8	known	0.70	7	3	7	3	y	0.62	10	6	10	6	y	0.50	9	9	9	9	y	0.50	9	9	9	9	y	0.63	12	7	12	7	y	0.33	5	10	5	10	y	0.38	3	5	3	5	n	0.33	3	6	3	6	n	0.50	4	4	4	4	n	0.68	15	7	15	7	y	0.43	6	8	6	8	y	0.42	8	11	8	11	y	ENSMUSG00000068921.15	Dap3	chr3	protein_coding	death associated protein 3
known_NIR_12413	chr3	88850135	88858176	-	88850135	88857175	5pMXE	ENSMUST00000090938.11	known	0.10	6	56	6	56	y	0.06	3	46	3	46	y	0.11	8	66	8	66	y	0.03	3	83	3	83	y	0.06	5	82	5	82	y	0.05	3	54	3	54	y	0.08	8	95	8	95	y	0.04	2	53	2	53	y	0.03	2	63	2	63	y	0.02	2	110	2	110	y	0.06	5	78	5	78	y	0.03	2	78	2	78	y	ENSMUSG00000068921.15	Dap3	chr3	protein_coding	death associated protein 3
known_NIR_12414	chr3	88850135	88858176	-	88850135	88857423	5pMXE	ENSMUST00000174077.8	known	0.46	6	7	6	7	y	0.23	3	10	3	10	y	0.47	8	9	8	9	y	0.25	3	9	3	9	y	0.29	5	12	5	12	y	0.38	3	5	3	5	n	0.73	8	3	8	3	y	0.40	2	3	2	3	n	0.33	2	4	2	4	n	0.12	2	15	2	15	y	0.45	5	6	5	6	y	0.20	2	8	2	8	y	ENSMUSG00000068921.15	Dap3	chr3	protein_coding	death associated protein 3
known_NIR_12415	chr3	88850135	88858268	-	88850135	88857175	5pMXE	ENSMUST00000090938.11	known	0.05	3	56	3	56	y	0.12	6	46	6	46	y	0.12	9	66	9	66	y	0.10	9	83	9	83	y	0.08	7	82	7	82	y	0.16	10	54	10	54	y	0.05	5	95	5	95	y	0.10	6	53	6	53	y	0.06	4	63	4	63	y	0.06	7	110	7	110	y	0.09	8	78	8	78	y	0.12	11	78	11	78	y	ENSMUSG00000068921.15	Dap3	chr3	protein_coding	death associated protein 3
known_NIR_12416	chr3	88850135	88858268	-	88850135	88858176	A5SS	ENSMUST00000173021.8	known	0.33	3	6	3	6	n	0.67	6	3	6	3	n	0.53	9	8	9	8	y	0.75	9	3	9	3	y	0.58	7	5	7	5	y	0.77	10	3	10	3	y	0.38	5	8	5	8	y	0.75	6	2	6	2	n	0.67	4	2	4	2	n	0.78	7	2	7	2	n	0.62	8	5	8	5	y	0.85	11	2	11	2	y	ENSMUSG00000068921.15	Dap3	chr3	protein_coding	death associated protein 3
known_NIR_12417	chr3	88850135	88858268	-	88858189	88858268	3pMXE	ENSMUST00000172790.2	known	0.21	3	11	3	11	y	0.40	6	9	6	9	y	0.38	9	15	9	15	y	0.53	9	8	9	8	y	0.30	7	16	7	16	y	0.77	10	3	10	3	y	0.23	5	17	5	17	y	0.75	6	2	6	2	n	0.20	4	16	4	16	y	0.35	7	13	7	13	y	0.47	8	9	8	9	y	0.50	11	11	11	11	y	ENSMUSG00000068921.15	Dap3	chr3	protein_coding	death associated protein 3
known_NIR_12418	chr3	88850135;88857248	88857175;88857423	-	88850135	88857423	cassetteExon	ENSMUST00000174077.8	known	0.83	34.5	7	56;13	7	y	0.72	26.0	10	46;6	10	y	0.81	38.0	9	66;10	9	y	0.83	44.0	9	83;5	9	y	0.79	45.0	12	82;8	12	y	0.86	29.5	5	54;5	5	y	0.94	51.5	3	95;8	3	y	0.90	28.0	3	53;3	3	y	0.90	35.5	4	63;8	4	y	0.79	57.0	15	110;4	15	y	0.87	41.0	6	78;4	6	y	0.85	44.0	8	78;10	8	y	ENSMUSG00000068921.15	Dap3	chr3	protein_coding	death associated protein 3
known_NIR_12419	chr3	88850135;88858189	88858176;88858268	-	88850135	88858268	cassetteExon	ENSMUST00000173135.8	known	0.74	8.5	3	6;11	3	y	0.50	6.0	6	3;9	6	y	0.56	11.5	9	8;15	9	y	0.38	5.5	9	3;8	9	y	0.60	10.5	7	5;16	7	y	0.23	3.0	10	3;3	10	y	0.71	12.5	5	8;17	5	y	0.25	2.0	6	2;2	6	y	0.69	9.0	4	2;16	4	y	0.52	7.5	7	2;13	7	y	0.47	7.0	8	5;9	8	y	0.37	6.5	11	2;11	11	y	ENSMUSG00000068921.15	Dap3	chr3	protein_coding	death associated protein 3
known_NIR_12420	chr3	89001150;89001672	89001538;89001759	-	89001150	89001759	cassetteExon	ENSMUST00000200659.2	known	1.00	1081.0	0	1015;1147	0	n	1.00	684.5	0	686;683	0	n	1.00	2078.5	0	1874;2283	0	n	1.00	813.0	0	778;848	0	n	1.00	2469.0	0	2326;2612	0	n	1.00	2101.5	2	1966;2237	2	y	1.00	2045.0	0	1961;2129	0	n	1.00	1393.5	0	1319;1468	0	n	1.00	1528.5	0	1410;1647	0	n	1.00	2211.0	3	2085;2337	3	y	1.00	2081.0	3	1954;2208	3	y	1.00	1738.0	2	1652;1824	2	y	ENSMUSG00000105204.2	Gm43738	chr3	protein_coding	predicted gene 43738
known_NIR_12421	chr3	89001884	89002167	-	89001836	89002167	A3SS	ENSMUST00000200659.2	known	0.00	0	889	0	889	n	0.00	2	591	2	591	y	0.00	6	1979	6	1979	y	0.00	3	749	3	749	y	0.00	3	2497	3	2497	y	0.00	4	1958	4	1958	y	0.00	5	1814	5	1814	y	0.00	6	1247	6	1247	y	0.01	9	1375	9	1375	y	0.00	4	1995	4	1995	y	0.00	4	1884	4	1884	y	0.00	3	1633	3	1633	y	ENSMUSG00000105204.2	Gm43738	chr3	protein_coding	predicted gene 43738
known_NIR_12422	chr3	89008138	89009063	-	89008138	89008228	5pMXE	ENSMUST00000200659.2	known	0.01	1	128	1	128	n	0.00	0	89	0	89	n	0.00	1	261	1	261	n	0.01	2	154	2	154	y	0.00	1	386	1	386	n	0.01	2	257	2	257	y	0.01	3	284	3	284	y	0.01	1	176	1	176	n	0.01	2	260	2	260	y	0.01	4	359	4	359	y	0.00	0	280	0	280	n	0.00	1	246	1	246	n	ENSMUSG00000105204.2	Gm43738	chr3	protein_coding	predicted gene 43738
known_NIR_12423	chr3	89008138	89009063	-	89008138	89009169	A5SS	ENSMUST00000081848.13	known	0.00	1	262	1	262	n	0.00	0	175	0	175	n	0.00	1	692	1	692	n	0.01	2	303	2	303	y	0.00	1	697	1	697	n	0.00	2	529	2	529	y	0.01	3	552	3	552	y	0.00	1	504	1	504	n	0.00	2	438	2	438	y	0.01	4	583	4	583	y	0.00	0	487	0	487	n	0.00	1	550	1	550	n	ENSMUSG00000059743.13	Fdps	chr3	protein_coding	farnesyl diphosphate synthetase
known_NIR_12424	chr3	89008138	89009169	-	89008138	89008228	5pMXE	ENSMUST00000200659.2	known	0.67	262	128	262	128	y	0.66	175	89	175	89	y	0.73	692	261	692	261	y	0.66	303	154	303	154	y	0.64	697	386	697	386	y	0.67	529	257	529	257	y	0.66	552	284	552	284	y	0.74	504	176	504	176	y	0.63	438	260	438	260	y	0.62	583	359	583	359	y	0.63	487	280	487	280	y	0.69	550	246	550	246	y	ENSMUSG00000105204.2	Gm43738	chr3	protein_coding	predicted gene 43738
known_NIR_12425	chr3	89008138	89009169	-	89008138;89008443	89008228;89009169	ES	ENSMUST00000196709.5	known	0.76	262	82.0	262	128;36	y	0.76	175	55.0	175	89;21	y	0.80	692	172.5	692	261;84	y	0.77	303	92.5	303	154;31	y	0.74	697	245.5	697	386;105	y	0.77	529	160.5	529	257;64	y	0.75	552	179.5	552	284;75	y	0.81	504	118.5	504	176;61	y	0.72	438	170.5	438	260;81	y	0.72	583	226.5	583	359;94	y	0.73	487	177.0	487	280;74	y	0.79	550	147.0	550	246;48	y	ENSMUSG00000059743.13	Fdps	chr3	protein_coding	farnesyl diphosphate synthetase
known_NIR_12426	chr3	89043925	89044531	+	89043944	89044531	A5SS	ENSMUST00000107482.10	known	1.00	5	0	5	0	n	1.00	6	0	6	0	n	1.00	3	0	3	0	n	0.33	6	12	6	12	y	0.40	8	12	8	12	y	0.44	4	5	4	5	n	1.00	7	0	7	0	n	0.45	5	6	5	6	y	0.25	5	15	5	15	y	0.29	12	30	12	30	y	0.33	5	10	5	10	y	1.00	8	0	8	0	n	ENSMUSG00000041237.13	Pklr	chr3	protein_coding	pyruvate kinase liver and red blood cell
known_NIR_12427	chr3	89044713	89044916	+	89044713	89048622	A3SS	ENSMUST00000047111.13	known	0.02	1	47	1	47	n	0.00	0	60	0	60	n	0.00	0	64	0	64	n	0.04	3	82	3	82	y	0.02	1	64	1	64	n	0.00	0	38	0	38	n	0.02	2	84	2	84	y	0.03	1	31	1	31	n	0.00	0	60	0	60	n	0.01	1	160	1	160	n	0.01	1	67	1	67	n	0.01	1	84	1	84	n	ENSMUSG00000041237.13	Pklr	chr3	protein_coding	pyruvate kinase liver and red blood cell
known_NIR_12428	chr3	89074511	89076005	+	89074511	89076002	A3SS	ENSMUST00000121212.9	known	0.17	6	29	6	29	y	0.00	0	15	0	15	n	0.16	5	26	5	26	y	0.28	8	21	8	21	y	0.18	7	32	7	32	y	0.24	5	16	5	16	y	0.14	4	24	4	24	y	0.25	5	15	5	15	y	0.09	2	20	2	20	y	0.21	7	26	7	26	y	0.17	4	20	4	20	y	0.21	8	31	8	31	y	ENSMUSG00000068917.13	Clk2	chr3	protein_coding	CDC-like kinase 2
known_NIR_12429	chr3	89076230	89076922	+	89076230	89076925	A3SS	ENSMUST00000121212.9	known	0.80	8	2	8	2	y	0.55	6	5	6	5	y	0.71	25	10	25	10	y	0.79	19	5	19	5	y	0.56	19	15	19	15	y	0.57	8	6	8	6	y	0.82	18	4	18	4	y	0.81	17	4	17	4	y	0.50	6	6	6	6	y	0.65	15	8	15	8	y	0.87	13	2	13	2	y	0.70	16	7	16	7	y	ENSMUSG00000068917.13	Clk2	chr3	protein_coding	CDC-like kinase 2
known_NIR_12430	chr3	89076230	89077356	+	89076230	89076922	A3SS	ENSMUST00000133323.2	known	0.38	5	8	5	8	y	0.60	9	6	9	6	y	0.07	2	25	2	25	y	0.34	10	19	10	19	y	0.17	4	19	4	19	y	0.38	5	8	5	8	y	0.25	6	18	6	18	y	0.23	5	17	5	17	y	0.33	3	6	3	6	n	0.52	16	15	16	15	y	0.24	4	13	4	13	y	0.33	8	16	8	16	y	ENSMUSG00000068917.13	Clk2	chr3	protein_coding	CDC-like kinase 2
known_NIR_12431	chr3	89076230	89077356	+	89076230;89077009	89076922;89077356	ES	ENSMUST00000121931.8	known	0.34	5	9.5	5	8;11	y	0.64	9	5.0	9	6;4	y	0.08	2	22.5	2	25;20	y	0.38	10	16.5	10	19;14	y	0.16	4	21.0	4	19;23	y	0.40	5	7.5	5	8;7	y	0.25	6	18.0	6	18;18	y	0.24	5	16.0	5	17;15	y	0.27	3	8.0	3	6;10	y	0.53	16	14.0	16	15;13	y	0.21	4	15.0	4	13;17	y	0.36	8	14.0	8	16;12	y	ENSMUSG00000068917.13	Clk2	chr3	protein_coding	CDC-like kinase 2
known_NIR_12432	chr3	89076230	89077356	+	89076230;89077009	89076925;89077356	ES	ENSMUST00000121212.9	known	0.43	5	6.5	5	2;11	y	0.67	9	4.5	9	5;4	y	0.12	2	15.0	2	10;20	y	0.51	10	9.5	10	5;14	y	0.17	4	19.0	4	15;23	y	0.43	5	6.5	5	6;7	y	0.35	6	11.0	6	4;18	y	0.34	5	9.5	5	4;15	y	0.27	3	8.0	3	6;10	y	0.60	16	10.5	16	8;13	y	0.30	4	9.5	4	2;17	y	0.46	8	9.5	8	7;12	y	ENSMUSG00000068917.13	Clk2	chr3	protein_coding	CDC-like kinase 2
known_NIR_12433	chr3	89085374	89086399	+	89085374	89086402	A3SS	ENSMUST00000029684.15	known	0.47	86	96	86	96	y	0.47	65	74	65	74	y	0.47	107	123	107	123	y	0.50	80	80	80	80	y	0.49	113	119	113	119	y	0.53	67	60	67	60	y	0.41	77	110	77	110	y	0.40	51	75	51	75	y	0.38	52	85	52	85	y	0.40	89	134	89	134	y	0.52	78	71	78	71	y	0.48	94	100	94	100	y	ENSMUSG00000028049.16	Scamp3	chr3	protein_coding	secretory carrier membrane protein 3
known_NIR_12434	chr3	89086744	89087346	+	89086744	89087559	A3SS	ENSMUST00000029684.15	known	0.00	0	197	0	197	n	0.01	1	164	1	164	n	0.03	7	225	7	225	y	0.00	0	196	0	196	n	0.00	1	258	1	258	n	0.01	1	168	1	168	n	0.00	0	208	0	208	n	0.00	0	115	0	115	n	0.01	1	125	1	125	n	0.02	4	214	4	214	y	0.00	0	191	0	191	n	0.01	1	184	1	184	n	ENSMUSG00000028049.16	Scamp3	chr3	protein_coding	secretory carrier membrane protein 3
known_NIR_12435	chr3	89088195	89089233	+	89088195	89088482	3pMXE	ENSMUST00000129294.8	known	0.00	0	246	0	246	n	0.00	0	207	0	207	n	0.01	3	235	3	235	y	0.00	0	214	0	214	n	0.01	3	233	3	233	y	0.00	0	152	0	152	n	0.00	0	266	0	266	n	0.00	0	134	0	134	n	0.00	0	157	0	157	n	0.00	0	295	0	295	n	0.00	0	236	0	236	n	0.00	0	210	0	210	n	ENSMUSG00000028049.16	Scamp3	chr3	protein_coding	secretory carrier membrane protein 3
known_NIR_12436	chr3	89088195	89089233	+	89088195;89088583	89088482;89089233	ES	ENSMUST00000029684.15	known	0.00	0	237.5	0	246;229	n	0.00	0	218.0	0	207;229	n	0.01	3	245.0	3	235;255	y	0.00	0	193.5	0	214;173	n	0.01	3	222.0	3	233;211	y	0.00	0	136.5	0	152;121	n	0.00	0	261.5	0	266;257	n	0.00	0	134.5	0	134;135	n	0.00	0	164.0	0	157;171	n	0.00	0	289.5	0	295;284	n	0.00	0	231.5	0	236;227	n	0.00	0	212.0	0	210;214	n	ENSMUSG00000028049.16	Scamp3	chr3	protein_coding	secretory carrier membrane protein 3
known_NIR_12437	chr3	89110393;89110667	89110499;89110779	+	89110393	89110779	cassetteExon	ENSMUST00000077367.11	known	0.11	5.5	44	8;3	44	y	0.15	5.0	28	6;4	28	y	0.07	5.5	77	7;4	77	y	0.07	6.0	84	5;7	84	y	0.10	10.0	86	9;11	86	y	0.02	1.5	60	1;2	60	n	0.06	3.0	51	2;4	51	y	0.06	4.0	58	3;5	58	y	0.09	3.0	32	5;1	32	n	0.14	9.5	59	11;8	59	y	0.14	8.5	53	10;7	53	y	0.10	5.0	43	4;6	43	y	ENSMUSG00000028048.12	Gba	chr3	protein_coding	glucosidase, beta, acid
known_NIR_12438	chr3	89114758	89115091	+	89114758	89115131	A3SS	ENSMUST00000077367.11	known	0.01	1	77	1	77	n	0.00	0	71	0	71	n	0.00	0	141	0	141	n	0.00	0	86	0	86	n	0.03	4	144	4	144	y	0.00	0	78	0	78	n	0.01	1	108	1	108	n	0.00	0	84	0	84	n	0.00	0	74	0	74	n	0.04	4	96	4	96	y	0.00	0	89	0	89	n	0.00	0	89	0	89	n	ENSMUSG00000028048.12	Gba	chr3	protein_coding	glucosidase, beta, acid
known_NIR_12439	chr3	89115294	89115623	+	89115294	89115619	A3SS	ENSMUST00000077367.11	known	0.00	0	128	0	128	n	0.00	0	133	0	133	n	0.00	0	169	0	169	n	0.09	9	95	9	95	y	0.00	0	191	0	191	n	0.00	0	92	0	92	n	0.00	0	160	0	160	n	0.03	3	84	3	84	y	0.06	5	80	5	80	y	0.00	0	126	0	126	n	0.00	0	111	0	111	n	0.00	0	125	0	125	n	ENSMUSG00000028048.12	Gba	chr3	protein_coding	glucosidase, beta, acid
known_NIR_12440	chr3	89116966	89117339	-	89116966	89117414	A5SS	ENSMUST00000239452.2	known	0.00	0	135	0	135	n	0.00	0	147	0	147	n	0.00	0	105	0	105	n	0.01	1	122	1	122	n	0.00	0	149	0	149	n	0.00	0	64	0	64	n	0.00	0	130	0	130	n	0.00	0	58	0	58	n	0.02	2	89	2	89	y	0.00	0	179	0	179	n	0.01	1	158	1	158	n	0.01	1	131	1	131	n	ENSMUSG00000064068.16	Mtx1	chr3	protein_coding	metaxin 1
known_NIR_12441	chr3	89117755	89119990	-	89117755	89117891	5pMXE	ENSMUST00000124086.9	known	0.00	0	145	0	145	n	0.00	0	134	0	134	n	0.00	0	121	0	121	n	0.00	0	140	0	140	n	0.01	2	176	2	176	y	0.00	0	66	0	66	n	0.00	0	167	0	167	n	0.00	0	80	0	80	n	0.00	0	140	0	140	n	0.00	0	191	0	191	n	0.00	0	156	0	156	n	0.00	0	178	0	178	n	ENSMUSG00000064068.16	Mtx1	chr3	protein_coding	metaxin 1
known_NIR_12442	chr3	89117755	89119990	-	89117755;89117983	89117891;89119990	ES	ENSMUST00000239452.2	known	0.00	0	137.0	0	145;129	n	0.00	0	130.5	0	134;127	n	0.00	0	123.5	0	121;126	n	0.00	0	138.0	0	140;136	n	0.01	2	186.5	2	176;197	y	0.00	0	64.0	0	66;62	n	0.00	0	174.0	0	167;181	n	0.00	0	79.5	0	80;79	n	0.00	0	133.0	0	140;126	n	0.00	0	197.5	0	191;204	n	0.00	0	150.5	0	156;145	n	0.00	0	175.0	0	178;172	n	ENSMUSG00000064068.16	Mtx1	chr3	protein_coding	metaxin 1
known_NIR_12443	chr3	89117980	89119990	-	89117983	89119990	A3SS	ENSMUST00000239452.2	known	0.05	7	129	7	129	y	0.04	5	127	5	127	y	0.05	6	126	6	126	y	0.01	2	136	2	136	y	0.00	0	197	0	197	n	0.07	5	62	5	62	y	0.01	2	181	2	181	y	0.02	2	79	2	79	y	0.02	2	126	2	126	y	0.02	5	204	5	204	y	0.03	4	145	4	145	y	0.00	0	172	0	172	n	ENSMUSG00000064068.16	Mtx1	chr3	protein_coding	metaxin 1
known_NIR_12444	chr3	89176605	89177134	-	89176518	89177134	A3SS	ENSMUST00000132445.8	known	0.04	1	22	1	22	n	0.00	0	17	0	17	n	0.08	3	33	3	33	y	0.00	0	23	0	23	n	0.08	3	35	3	35	y	0.00	0	18	0	18	n	0.07	2	28	2	28	y	0.00	0	23	0	23	n	0.09	2	21	2	21	y	0.12	3	21	3	21	y	0.06	1	17	1	17	n	0.07	1	14	1	14	n	ENSMUSG00000027953.14	Slc50a1	chr3	protein_coding	solute carrier family 50 (sugar transporter), member 1
known_NIR_12445	chr3	89177446	89177778	-	89177446	89177693	A5SS	ENSMUST00000185119.8	known	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.10	3	26	3	26	y	0.00	0	16	0	16	n	0.05	2	41	2	41	y	0.05	1	18	1	18	n	0.00	0	22	0	22	n	0.07	1	13	1	13	n	0.00	0	13	0	13	n	0.11	2	17	2	17	y	0.00	0	20	0	20	n	0.00	0	10	0	10	n	ENSMUSG00000027953.14	Slc50a1	chr3	protein_coding	solute carrier family 50 (sugar transporter), member 1
known_NIR_12446	chr3	89180129	89183437	-	89180129;89180329	89180264;89183437	ES	ENSMUST00000029566.9	known	0.00	0	176.0	0	167;185	n	0.00	0	89.0	0	86;92	n	0.00	4	990.0	4	943;1037	y	0.00	0	172.5	0	171;174	n	0.01	2	375.5	2	368;383	y	0.00	0	177.5	0	174;181	n	0.00	1	280.5	1	274;287	n	0.00	0	224.5	0	218;231	n	0.00	0	284.0	0	301;267	n	0.00	1	294.0	1	306;282	n	0.00	0	284.0	0	290;278	n	0.00	0	355.5	0	359;352	n	ENSMUSG00000027954.10	Efna1	chr3	protein_coding	ephrin A1
known_NIR_12447	chr3	89288822	89300342	-	89288822	89299261	5pMXE	ENSMUST00000107432.8	known	1.00	71	0	71	0	n	1.00	61	0	61	0	n	1.00	121	0	121	0	n	0.99	84	1	84	1	n	1.00	149	0	149	0	n	1.00	85	0	85	0	n	1.00	118	0	118	0	n	0.98	95	2	95	2	y	1.00	65	0	65	0	n	1.00	102	0	102	0	n	1.00	68	0	68	0	n	1.00	102	0	102	0	n	ENSMUSG00000028042.16	Zbtb7b	chr3	protein_coding	zinc finger and BTB domain containing 7B
known_NIR_12448	chr3	89299609	89305266	+	89299813	89305266	A5SS	ENSMUST00000145400.8	known	0.28	7	18	7	18	y	0.03	1	30	1	30	n	0.10	8	69	8	69	y	0.29	4	10	4	10	y	0.12	6	46	6	46	y	0.18	8	36	8	36	y	0.34	19	37	19	37	y	0.22	7	25	7	25	y	0.50	5	5	5	5	y	0.16	8	43	8	43	y	0.21	7	26	7	26	y	0.17	4	20	4	20	y	ENSMUSG00000074466.13	Gm15417	chr3	lncRNA	predicted gene 15417
known_NIR_12449	chr3	89300442	89300784	-	89300442	89300618	5pMXE	ENSMUST00000148361.8	known	0.50	3	3	3	3	n	0.33	1	2	1	2	n	0.56	5	4	5	4	n	1.00	5	0	5	0	n	0.50	6	6	6	6	y	0.77	10	3	10	3	y	0.23	3	10	3	10	y	0.40	2	3	2	3	n	0.64	7	4	7	4	y	0.45	5	6	5	6	y	0.71	5	2	5	2	n	0.33	3	6	3	6	n	ENSMUSG00000028042.16	Zbtb7b	chr3	protein_coding	zinc finger and BTB domain containing 7B
known_NIR_12450	chr3	89301700	89305266	+	89299609	89305266	A5SS	ENSMUST00000152143.2	known	0.75	21	7	21	7	y	0.95	18	1	18	1	n	0.53	9	8	9	8	y	0.83	19	4	19	4	y	0.73	16	6	16	6	y	0.33	4	8	4	8	y	0.53	21	19	21	19	y	0.61	11	7	11	7	y	0.78	18	5	18	5	y	0.62	13	8	13	8	y	0.71	17	7	17	7	y	0.76	13	4	13	4	y	ENSMUSG00000074466.13	Gm15417	chr3	lncRNA	predicted gene 15417
known_NIR_12451	chr3	89301700	89305266	+	89299813	89305266	A5SS	ENSMUST00000145400.8	known	0.54	21	18	21	18	y	0.38	18	30	18	30	y	0.12	9	69	9	69	y	0.66	19	10	19	10	y	0.26	16	46	16	46	y	0.10	4	36	4	36	y	0.36	21	37	21	37	y	0.31	11	25	11	25	y	0.78	18	5	18	5	y	0.23	13	43	13	43	y	0.40	17	26	17	26	y	0.39	13	20	13	20	y	ENSMUSG00000074466.13	Gm15417	chr3	lncRNA	predicted gene 15417
known_NIR_12452	chr3	89303389	89305266	+	89299609	89305266	A5SS	ENSMUST00000152143.2	known	0.68	15	7	15	7	y	0.89	8	1	8	1	n	0.47	7	8	7	8	y	0.85	23	4	23	4	y	0.81	25	6	25	6	y	0.43	6	8	6	8	y	0.55	23	19	23	19	y	0.46	6	7	6	7	y	0.85	28	5	28	5	y	0.77	27	8	27	8	y	0.79	26	7	26	7	y	0.84	21	4	21	4	y	ENSMUSG00000074466.13	Gm15417	chr3	lncRNA	predicted gene 15417
known_NIR_12453	chr3	89303389	89305266	+	89299813	89305266	A5SS	ENSMUST00000145400.8	known	0.45	15	18	15	18	y	0.21	8	30	8	30	y	0.09	7	69	7	69	y	0.70	23	10	23	10	y	0.35	25	46	25	46	y	0.14	6	36	6	36	y	0.38	23	37	23	37	y	0.19	6	25	6	25	y	0.85	28	5	28	5	y	0.39	27	43	27	43	y	0.50	26	26	26	26	y	0.51	21	20	21	20	y	ENSMUSG00000074466.13	Gm15417	chr3	lncRNA	predicted gene 15417
known_NIR_12454	chr3	89303389	89305266	+	89301700	89305266	A5SS	ENSMUST00000126926.2	known	0.42	15	21	15	21	y	0.31	8	18	8	18	y	0.44	7	9	7	9	y	0.55	23	19	23	19	y	0.61	25	16	25	16	y	0.60	6	4	6	4	y	0.52	23	21	23	21	y	0.35	6	11	6	11	y	0.61	28	18	28	18	y	0.68	27	13	27	13	y	0.60	26	17	26	17	y	0.62	21	13	21	13	y	ENSMUSG00000074466.13	Gm15417	chr3	lncRNA	predicted gene 15417
known_NIR_12455	chr3	89318687	89318868	-	89318687	89319053	A5SS	ENSMUST00000107426.8	known	0.41	13	19	13	19	y	0.58	15	11	15	11	y	0.50	20	20	20	20	y	0.72	21	8	21	8	y	0.51	19	18	19	18	y	0.52	14	13	14	13	y	0.55	26	21	26	21	y	0.56	20	16	20	16	y	0.61	23	15	23	15	y	0.69	31	14	31	14	y	0.57	17	13	17	13	y	0.61	20	13	20	13	y	ENSMUSG00000042642.14	Flad1	chr3	protein_coding	flavin adenine dinucleotide synthetase 1
known_NIR_12456	chr3	89318687	89318868	-	89318687	89319091	A5SS	ENSMUST00000050398.11	known	0.19	13	57	13	57	y	0.24	15	48	15	48	y	0.17	20	96	20	96	y	0.27	21	57	21	57	y	0.21	19	71	19	71	y	0.21	14	52	14	52	y	0.26	26	74	26	74	y	0.23	20	68	20	68	y	0.29	23	55	23	55	y	0.29	31	76	31	76	y	0.24	17	55	17	55	y	0.22	20	69	20	69	y	ENSMUSG00000042642.14	Flad1	chr3	protein_coding	flavin adenine dinucleotide synthetase 1
known_NIR_12457	chr3	89318687	89319053	-	89318687	89319091	A5SS	ENSMUST00000050398.11	known	0.25	19	57	19	57	y	0.19	11	48	11	48	y	0.17	20	96	20	96	y	0.12	8	57	8	57	y	0.20	18	71	18	71	y	0.20	13	52	13	52	y	0.22	21	74	21	74	y	0.19	16	68	16	68	y	0.21	15	55	15	55	y	0.16	14	76	14	76	y	0.19	13	55	13	55	y	0.16	13	69	13	69	y	ENSMUSG00000042642.14	Flad1	chr3	protein_coding	flavin adenine dinucleotide synthetase 1
known_NIR_12458	chr3	89318687	89319125	-	89318687	89318868	5pMXE	ENSMUST00000107429.10	known	0.07	1	13	1	13	n	0.25	5	15	5	15	y	0.20	5	20	5	20	y	0.12	3	21	3	21	y	0.14	3	19	3	19	y	0.12	2	14	2	14	y	0.19	6	26	6	26	y	0.13	3	20	3	20	y	0.12	3	23	3	23	y	0.03	1	31	1	31	n	0.11	2	17	2	17	y	0.05	1	20	1	20	n	ENSMUSG00000042642.14	Flad1	chr3	protein_coding	flavin adenine dinucleotide synthetase 1
known_NIR_12459	chr3	89318687	89319125	-	89318687	89319053	A5SS	ENSMUST00000107426.8	known	0.05	1	19	1	19	n	0.31	5	11	5	11	y	0.20	5	20	5	20	y	0.27	3	8	3	8	y	0.14	3	18	3	18	y	0.13	2	13	2	13	y	0.22	6	21	6	21	y	0.16	3	16	3	16	y	0.17	3	15	3	15	y	0.07	1	14	1	14	n	0.13	2	13	2	13	y	0.07	1	13	1	13	n	ENSMUSG00000042642.14	Flad1	chr3	protein_coding	flavin adenine dinucleotide synthetase 1
known_NIR_12460	chr3	89318687	89319125	-	89318687	89319091	A5SS	ENSMUST00000050398.11	known	0.02	1	57	1	57	n	0.09	5	48	5	48	y	0.05	5	96	5	96	y	0.05	3	57	3	57	y	0.04	3	71	3	71	y	0.04	2	52	2	52	y	0.07	6	74	6	74	y	0.04	3	68	3	68	y	0.05	3	55	3	55	y	0.01	1	76	1	76	n	0.04	2	55	2	55	y	0.01	1	69	1	69	n	ENSMUSG00000042642.14	Flad1	chr3	protein_coding	flavin adenine dinucleotide synthetase 1
known_NIR_12461	chr3	89323708	89325094	-	89323708	89325462	A5SS	ENSMUST00000029679.4	known	0.03	1	33	1	33	n	0.03	1	37	1	37	n	0.06	5	81	5	81	y	0.00	0	29	0	29	n	0.00	0	38	0	38	n	0.13	6	40	6	40	y	0.00	0	31	0	31	n	0.07	3	38	3	38	y	0.11	3	24	3	24	y	0.04	1	22	1	22	n	0.00	0	35	0	35	n	0.00	0	43	0	43	n	ENSMUSG00000028044.7	Cks1b	chr3	protein_coding	CDC28 protein kinase 1b
known_NIR_12462	chr3	89326016	89330233	+	89326016;89329652	89329485;89330233	ES	ENSMUST00000039110.12	known	0.02	1	52.0	1	26;78	n	0.00	0	36.5	0	14;59	n	0.07	7	94.5	7	39;150	y	0.05	4	80.5	4	43;118	y	0.01	1	98.5	1	56;141	n	0.07	5	62.5	5	31;94	y	0.05	4	70.0	4	29;111	y	0.06	4	68.5	4	34;103	y	0.00	0	44.5	0	20;69	n	0.07	5	70.5	5	42;99	y	0.06	3	45.5	3	23;68	y	0.08	6	70.5	6	32;109	y	ENSMUSG00000042626.14	Shc1	chr3	protein_coding	src homology 2 domain-containing transforming protein C1
known_NIR_12463	chr3	89326016	89330233	+	89329652	89330233	5pMXE	ENSMUST00000094378.10	known	0.01	1	78	1	78	n	0.00	0	59	0	59	n	0.04	7	150	7	150	y	0.03	4	118	4	118	y	0.01	1	141	1	141	n	0.05	5	94	5	94	y	0.03	4	111	4	111	y	0.04	4	103	4	103	y	0.00	0	69	0	69	n	0.05	5	99	5	99	y	0.04	3	68	3	68	y	0.05	6	109	6	109	y	ENSMUSG00000042626.14	Shc1	chr3	protein_coding	src homology 2 domain-containing transforming protein C1
known_NIR_12464	chr3	89329055	89329485	+	89326016	89329485	A5SS	ENSMUST00000039110.12	known	0.07	2	26	2	26	y	0.00	0	14	0	14	n	0.00	0	39	0	39	n	0.00	0	43	0	43	n	0.03	2	56	2	56	y	0.00	0	31	0	31	n	0.00	0	29	0	29	n	0.06	2	34	2	34	y	0.00	0	20	0	20	n	0.00	0	42	0	42	n	0.00	0	23	0	23	n	0.00	0	32	0	32	n	ENSMUSG00000042626.14	Shc1	chr3	protein_coding	src homology 2 domain-containing transforming protein C1
known_NIR_12465	chr3	89338036	89338434	+	89337760	89338434	A5SS	ENSMUST00000136573.8	known	1.00	16	0	16	0	n	1.00	8	0	8	0	n	1.00	20	0	20	0	n	0.96	25	1	25	1	n	0.96	24	1	24	1	n	1.00	9	0	9	0	n	0.89	16	2	16	2	y	1.00	18	0	18	0	n	1.00	5	0	5	0	n	0.94	16	1	16	1	n	0.90	18	2	18	2	y	0.85	11	2	11	2	y	ENSMUSG00000047824.14	Pygo2	chr3	protein_coding	pygopus 2
known_NIR_12466	chr3	89338145	89338434	+	89338036	89338434	A5SS	ENSMUST00000060061.11	known	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.00	0	20	0	20	n	0.00	0	25	0	25	n	0.00	0	24	0	24	n	0.18	2	9	2	9	y	0.00	0	16	0	16	n	0.00	0	18	0	18	n	0.00	0	5	0	5	n	0.00	0	16	0	16	n	0.00	0	18	0	18	n	0.00	0	11	0	11	n	ENSMUSG00000047824.14	Pygo2	chr3	protein_coding	pygopus 2
known_NIR_12467	chr3	89344261	89346824	+	89344087	89346824	A5SS	ENSMUST00000038942.10	known	-	-	-	-	-	-	0.00	0	4	0	4	n	0.09	2	20	2	20	y	0.09	1	10	1	10	n	0.13	3	20	3	20	y	0.00	0	14	0	14	n	0.25	6	18	6	18	y	0.21	4	15	4	15	y	0.12	1	7	1	7	n	0.11	2	16	2	16	y	0.00	0	7	0	7	n	0.25	1	3	1	3	n	ENSMUSG00000042613.10	Pbxip1	chr3	protein_coding	pre B cell leukemia transcription factor interacting protein 1
known_NIR_12468	chr3	89346908	89350408	+	89346908	89350429	A3SS	ENSMUST00000038942.10	known	0.10	1	9	1	9	n	0.17	1	5	1	5	n	0.14	3	18	3	18	y	0.00	0	11	0	11	n	0.09	3	32	3	32	y	0.06	1	17	1	17	n	0.09	4	43	4	43	y	0.00	0	10	0	10	n	0.09	1	10	1	10	n	0.08	2	24	2	24	y	0.00	0	10	0	10	n	0.00	0	4	0	4	n	ENSMUSG00000042613.10	Pbxip1	chr3	protein_coding	pre B cell leukemia transcription factor interacting protein 1
known_NIR_12469	chr3	89367193	89369189	+	89366771	89369189	A5SS	ENSMUST00000029564.12	known	0.00	0	122	0	122	n	0.00	0	90	0	90	n	0.00	0	228	0	228	n	0.00	0	138	0	138	n	0.03	6	189	6	189	y	0.00	0	173	0	173	n	0.00	0	190	0	190	n	0.00	0	117	0	117	n	0.00	0	198	0	198	n	0.00	0	358	0	358	n	0.00	0	278	0	278	n	0.00	0	255	0	255	n	ENSMUSG00000027952.17	Pmvk	chr3	protein_coding	phosphomevalonate kinase
known_NIR_12470	chr3	89638145	89642149	+	89622457	89642149	A5SS	ENSMUST00000098924.9	known	1.00	9	0	9	0	n	1.00	14	0	14	0	n	1.00	35	0	35	0	n	1.00	30	0	30	0	n	1.00	26	0	26	0	n	0.85	11	2	11	2	y	1.00	31	0	31	0	n	0.83	10	2	10	2	y	0.97	28	1	28	1	n	0.94	29	2	29	2	y	0.86	12	2	12	2	y	1.00	17	0	17	0	n	ENSMUSG00000027951.17	Adar	chr3	protein_coding	adenosine deaminase, RNA-specific
known_NIR_12471	chr3	89638145	89642149	+	89638145	89645297	A3SS	ENSMUST00000121094.8	known	1.00	9	0	9	0	n	1.00	14	0	14	0	n	1.00	35	0	35	0	n	1.00	30	0	30	0	n	1.00	26	0	26	0	n	1.00	11	0	11	0	n	1.00	31	0	31	0	n	1.00	10	0	10	0	n	1.00	28	0	28	0	n	1.00	29	0	29	0	n	1.00	12	0	12	0	n	0.89	17	2	17	2	y	ENSMUSG00000027951.17	Adar	chr3	protein_coding	adenosine deaminase, RNA-specific
known_NIR_12472	chr3	89638145	89645297	+	89638145;89643580	89642149;89645297	ES	ENSMUST00000029563.14	known	0.00	0	12.5	0	9;16	n	0.00	0	13.5	0	14;13	n	0.00	0	36.0	0	35;37	n	0.00	0	24.5	0	30;19	n	0.00	0	24.5	0	26;23	n	0.00	0	11.0	0	11;11	n	0.00	0	22.0	0	31;13	n	0.00	0	10.0	0	10;10	n	0.00	0	22.0	0	28;16	n	0.00	0	24.5	0	29;20	n	0.00	0	9.5	0	12;7	n	0.09	2	21.5	2	17;26	y	ENSMUSG00000027951.17	Adar	chr3	protein_coding	adenosine deaminase, RNA-specific
known_NIR_12473	chr3	89638145	89645297	+	89643580	89645297	A5SS&ES	ENSMUST00000098924.9	known	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.00	0	37	0	37	n	0.00	0	19	0	19	n	0.00	0	23	0	23	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.00	0	20	0	20	n	0.00	0	7	0	7	n	0.07	2	26	2	26	y	ENSMUSG00000027951.17	Adar	chr3	protein_coding	adenosine deaminase, RNA-specific
known_NIR_12474	chr3	89652830	89653127	+	89652908	89653127	A5SS	ENSMUST00000098924.9	known	0.77	30	9	30	9	y	0.73	19	7	19	7	y	0.68	34	16	34	16	y	0.84	26	5	26	5	y	0.87	48	7	48	7	y	0.94	15	1	15	1	n	0.85	22	4	22	4	y	0.67	14	7	14	7	y	0.94	16	1	16	1	n	0.83	24	5	24	5	y	0.71	17	7	17	7	y	0.74	29	10	29	10	y	ENSMUSG00000027951.17	Adar	chr3	protein_coding	adenosine deaminase, RNA-specific
known_NIR_12475	chr3	89786202	89793209	-	89786199	89793209	A3SS	ENSMUST00000197679.5	known	0.44	25	32	25	32	y	0.37	21	36	21	36	y	0.34	20	38	20	38	y	0.38	39	65	39	65	y	0.50	64	65	64	65	y	0.32	13	28	13	28	y	0.49	51	53	51	53	y	0.32	21	44	21	44	y	0.54	22	19	22	19	y	0.40	35	52	35	52	y	0.43	21	28	21	28	y	0.49	31	32	31	32	y	ENSMUSG00000027947.12	Il6ra	chr3	protein_coding	interleukin 6 receptor, alpha
known_NIR_12476	chr3	89903605	89905109	-	89903605	89904694	A5SS&ES	ENSMUST00000079724.9	known	0.00	1	248	1	248	n	0.00	0	262	0	262	n	0.00	0	338	0	338	n	0.00	0	216	0	216	n	0.00	0	328	0	328	n	0.01	2	204	2	204	y	0.00	1	317	1	317	n	0.00	0	174	0	174	n	0.00	0	201	0	201	n	0.01	4	319	4	319	y	0.00	0	261	0	261	n	0.01	4	276	4	276	y	ENSMUSG00000027944.14	Hax1	chr3	protein_coding	HCLS1 associated X-1
known_NIR_12477	chr3	89904872	89905045	-	89904881	89905045	A3SS	ENSMUST00000079724.9	known	0.07	21	264	21	264	y	0.08	20	231	20	231	y	0.06	21	357	21	357	y	0.06	17	251	17	251	y	0.06	20	311	20	311	y	0.05	11	203	11	203	y	0.08	24	287	24	287	y	0.07	11	149	11	149	y	0.12	23	163	23	163	y	0.05	14	284	14	284	y	0.06	17	256	17	256	y	0.09	24	254	24	254	y	ENSMUSG00000027944.14	Hax1	chr3	protein_coding	HCLS1 associated X-1
known_NIR_12478	chr3	89905310	89905632	-	89905310	89905835	A5SS	ENSMUST00000079724.9	known	0.04	11	263	11	263	y	0.06	15	233	15	233	y	0.10	36	333	36	333	y	0.04	10	267	10	267	y	0.11	36	300	36	300	y	0.09	20	198	20	198	y	0.08	24	292	24	292	y	0.10	18	159	18	159	y	0.06	12	196	12	196	y	0.07	21	280	21	280	y	0.05	14	241	14	241	y	0.05	14	290	14	290	y	ENSMUSG00000027944.14	Hax1	chr3	protein_coding	HCLS1 associated X-1
known_NIR_12479	chr3	89905410	89905632	-	89905310	89905632	A3SS	ENSMUST00000198782.2	known	0.00	0	11	0	11	n	0.12	2	15	2	15	y	0.14	6	36	6	36	y	0.17	2	10	2	10	y	0.12	5	36	5	36	y	0.13	3	20	3	20	y	0.08	2	24	2	24	y	0.10	2	18	2	18	y	0.14	2	12	2	12	y	0.09	2	21	2	21	y	0.07	1	14	1	14	n	0.22	4	14	4	14	y	ENSMUSG00000027944.14	Hax1	chr3	protein_coding	HCLS1 associated X-1
known_NIR_12480	chr3	89905410	89905632	-	89905410	89905835	A5SS	ENSMUST00000199163.2	known	0.00	0	12	0	12	n	0.15	2	11	2	11	y	0.46	6	7	6	7	y	0.22	2	7	2	7	n	0.29	5	12	5	12	y	0.18	3	14	3	14	y	0.50	2	2	2	2	n	0.17	2	10	2	10	y	0.33	2	4	2	4	n	0.25	2	6	2	6	n	0.12	1	7	1	7	n	0.44	4	5	4	5	n	ENSMUSG00000027944.14	Hax1	chr3	protein_coding	HCLS1 associated X-1
known_NIR_12481	chr3	89905410	89905835	-	89905310	89905835	A3SS	ENSMUST00000079724.9	known	0.04	12	263	12	263	y	0.05	11	233	11	233	y	0.02	7	333	7	333	y	0.03	7	267	7	267	y	0.04	12	300	12	300	y	0.07	14	198	14	198	y	0.01	2	292	2	292	y	0.06	10	159	10	159	y	0.02	4	196	4	196	y	0.02	6	280	6	280	y	0.03	7	241	7	241	y	0.02	5	290	5	290	y	ENSMUSG00000027944.14	Hax1	chr3	protein_coding	HCLS1 associated X-1
known_NIR_12482	chr3	89907560;89909175	89909125;89909586	-	89907560	89909586	cassetteExon	ENSMUST00000198322.5	known	0.25	6.5	19	1;12	19	n	0.33	3.0	6	0;6	6	n	0.40	2.0	3	1;3	3	n	0.50	5.0	5	0;10	5	n	0.49	11.5	12	9;14	12	y	0.80	4.0	1	0;8	1	n	0.33	6.0	12	3;9	12	y	0.38	3.0	5	0;6	5	n	0.40	6.0	9	2;10	9	y	0.27	6.0	16	0;12	16	n	0.21	6.0	23	2;10	23	y	0.56	10.0	8	7;13	8	y	ENSMUSG00000042520.17	Ubap2l	chr3	protein_coding	ubiquitin-associated protein 2-like
known_NIR_12483	chr3	89908298	89909125	-	89907560	89909125	A3SS	ENSMUST00000029553.16	known	0.89	8	1	8	1	n	1.00	6	0	6	0	n	0.67	2	1	2	1	n	1.00	7	0	7	0	n	0.36	5	9	5	9	y	1.00	5	0	5	0	n	0.57	4	3	4	3	n	1.00	3	0	3	0	n	0.75	6	2	6	2	n	1.00	5	0	5	0	n	0.83	10	2	10	2	y	0.50	7	7	7	7	y	ENSMUSG00000042520.17	Ubap2l	chr3	protein_coding	ubiquitin-associated protein 2-like
known_NIR_12484	chr3	89908298	89909586	-	89907560	89909586	A3SS	ENSMUST00000198322.5	known	0.54	22	19	22	19	y	0.82	28	6	28	6	y	0.92	35	3	35	3	y	0.84	27	5	27	5	y	0.77	41	12	41	12	y	0.93	13	1	13	1	n	0.77	40	12	40	12	y	0.76	16	5	16	5	y	0.77	30	9	30	9	y	0.67	32	16	32	16	y	0.62	37	23	37	23	y	0.74	23	8	23	8	y	ENSMUSG00000042520.17	Ubap2l	chr3	protein_coding	ubiquitin-associated protein 2-like
known_NIR_12485	chr3	89908298	89909586	-	89909175	89909586	A3SS&ES	ENSMUST00000029553.16	known	0.65	22	12	22	12	y	0.82	28	6	28	6	y	0.92	35	3	35	3	y	0.73	27	10	27	10	y	0.75	41	14	41	14	y	0.62	13	8	13	8	y	0.82	40	9	40	9	y	0.73	16	6	16	6	y	0.75	30	10	30	10	y	0.73	32	12	32	12	y	0.79	37	10	37	10	y	0.64	23	13	23	13	y	ENSMUSG00000042520.17	Ubap2l	chr3	protein_coding	ubiquitin-associated protein 2-like
known_NIR_12486	chr3	89908298;89909175	89909125;89909586	-	89908298	89909586	cassetteExon	ENSMUST00000064639.15	known	0.31	10.0	22	8;12	22	y	0.18	6.0	28	6;6	28	y	0.07	2.5	35	2;3	35	y	0.24	8.5	27	7;10	27	y	0.19	9.5	41	5;14	41	y	0.33	6.5	13	5;8	13	y	0.14	6.5	40	4;9	40	y	0.22	4.5	16	3;6	16	y	0.21	8.0	30	6;10	30	y	0.21	8.5	32	5;12	32	y	0.21	10.0	37	10;10	37	y	0.30	10.0	23	7;13	23	y	ENSMUSG00000042520.17	Ubap2l	chr3	protein_coding	ubiquitin-associated protein 2-like
known_NIR_12487	chr3	89909783	89910552	-	89909780	89910552	A3SS	ENSMUST00000198322.5	known	0.79	38	10	38	10	y	0.76	39	12	39	12	y	0.79	49	13	49	13	y	0.80	37	9	37	9	y	0.84	57	11	57	11	y	0.82	23	5	23	5	y	0.91	62	6	62	6	y	0.83	19	4	19	4	y	0.81	48	11	48	11	y	0.82	62	14	62	14	y	0.84	63	12	63	12	y	0.82	60	13	60	13	y	ENSMUSG00000042520.17	Ubap2l	chr3	protein_coding	ubiquitin-associated protein 2-like
known_NIR_12488	chr3	89913924	89915563	-	89910619	89915563	A3SS	ENSMUST00000198322.5	known	0.44	37	48	37	48	y	0.54	44	37	44	37	y	0.61	62	39	62	39	y	0.58	41	30	41	30	y	0.51	48	46	48	46	y	0.69	31	14	31	14	y	0.42	44	60	44	60	y	0.56	31	24	31	24	y	0.44	32	41	32	41	y	0.60	65	44	65	44	y	0.49	42	44	42	44	y	0.42	40	55	40	55	y	ENSMUSG00000042520.17	Ubap2l	chr3	protein_coding	ubiquitin-associated protein 2-like
known_NIR_12489	chr3	89935684	89938603	-	89935684	89938618	A5SS	ENSMUST00000029553.16	known	0.29	7	17	7	17	y	0.00	0	14	0	14	n	0.17	7	35	7	35	y	0.35	15	28	15	28	y	0.18	6	27	6	27	y	0.20	4	16	4	16	y	0.37	7	12	7	12	y	0.15	3	17	3	17	y	0.17	4	19	4	19	y	0.33	8	16	8	16	y	0.08	2	24	2	24	y	0.29	10	25	10	25	y	ENSMUSG00000042520.17	Ubap2l	chr3	protein_coding	ubiquitin-associated protein 2-like
known_NIR_12490	chr3	89935684;89938677	89938603;89941372	-	89935684	89941372	cassetteExon	ENSMUST00000198322.5	known	0.45	15.5	19	7;24	19	y	0.68	12.5	6	0;25	6	n	0.55	23.5	19	7;40	19	y	0.61	33.0	21	15;51	21	y	0.39	24.5	39	6;43	39	y	0.47	12.5	14	4;21	14	y	0.26	14.0	39	7;21	39	y	0.50	17.0	17	3;31	17	y	0.41	14.0	20	4;24	20	y	0.52	20.5	19	8;33	19	y	0.42	13.0	18	2;24	18	y	0.64	23.5	13	10;37	13	y	ENSMUSG00000042520.17	Ubap2l	chr3	protein_coding	ubiquitin-associated protein 2-like
known_NIR_12491	chr3	89935684;89938677	89938618;89941372	-	89935684	89941372	cassetteExon	ENSMUST00000198322.5	known	0.52	20.5	19	17;24	19	y	0.76	19.5	6	14;25	6	y	0.66	37.5	19	35;40	19	y	0.65	39.5	21	28;51	21	y	0.47	35.0	39	27;43	39	y	0.57	18.5	14	16;21	14	y	0.30	16.5	39	12;21	39	y	0.59	24.0	17	17;31	17	y	0.52	21.5	20	19;24	20	y	0.56	24.5	19	16;33	19	y	0.57	24.0	18	24;24	18	y	0.70	31.0	13	25;37	13	y	ENSMUSG00000042520.17	Ubap2l	chr3	protein_coding	ubiquitin-associated protein 2-like
known_NIR_12492	chr3	89945772	89946122	-	89945772	89946155	A5SS	ENSMUST00000198322.5	known	0.17	9	45	9	45	y	0.55	16	13	16	13	y	0.24	19	59	19	59	y	0.12	10	71	10	71	y	0.24	21	65	21	65	y	0.12	5	35	5	35	y	0.07	4	56	4	56	y	0.26	14	40	14	40	y	0.34	16	31	16	31	y	0.19	14	60	14	60	y	0.27	14	37	14	37	y	0.14	10	59	10	59	y	ENSMUSG00000042520.17	Ubap2l	chr3	protein_coding	ubiquitin-associated protein 2-like
known_NIR_12493	chr3	89955206	89959762	-	89955206	89959697	A5SS	ENSMUST00000198322.5	known	0.86	6	1	6	1	n	0.75	3	1	3	1	n	0.77	10	3	10	3	y	0.61	14	9	14	9	y	0.65	13	7	13	7	y	0.80	4	1	4	1	n	0.43	6	8	6	8	y	0.73	8	3	8	3	y	0.60	3	2	3	2	n	0.71	5	2	5	2	n	0.50	4	4	4	4	n	1.00	10	0	10	0	n	ENSMUSG00000042520.17	Ubap2l	chr3	protein_coding	ubiquitin-associated protein 2-like
known_NIR_12494	chr3	89960916	89963836	+	89960916;89963631	89963514;89963836	ES	ENSMUST00000159064.8	known	0.02	2	108.5	2	92;125	y	0.01	1	113.0	1	108;118	n	0.00	0	133.5	0	123;144	n	0.01	1	107.0	1	115;99	n	0.01	1	125.5	1	112;139	n	0.00	0	89.5	0	92;87	n	0.00	0	146.0	0	150;142	n	0.01	1	86.5	1	90;83	n	0.01	1	91.5	1	81;102	n	0.00	0	147.0	0	145;149	n	0.00	0	104.5	0	103;106	n	0.00	0	127.0	0	99;155	n	ENSMUSG00000027942.18	4933434E20Rik	chr3	protein_coding	RIKEN cDNA 4933434E20 gene
known_NIR_12495	chr3	89960916;89963889	89963514;89965792	+	89960916	89965792	cassetteExon	ENSMUST00000161918.3	known	1.00	109.0	0	92;126	0	n	0.97	113.5	4	108;119	4	y	0.98	123.0	3	123;123	3	y	0.95	105.5	5	115;96	5	y	0.96	129.5	5	112;147	5	y	0.98	83.5	2	92;75	2	y	0.98	143.5	3	150;137	3	y	0.98	79.5	2	90;69	2	y	0.97	83.5	3	81;86	3	y	1.00	139.5	0	145;134	0	n	0.98	108.0	2	103;113	2	y	0.99	131.5	2	99;164	2	y	ENSMUSG00000027942.18	4933434E20Rik	chr3	protein_coding	RIKEN cDNA 4933434E20 gene
known_NIR_12496	chr3	89966107	89967669	+	89966107	89968945	A3SS	ENSMUST00000159064.8	known	0.09	11	117	11	117	y	0.14	17	108	17	108	y	0.13	20	139	20	139	y	0.11	16	126	16	126	y	0.13	22	150	22	150	y	0.13	15	97	15	97	y	0.08	12	132	12	132	y	0.13	12	82	12	82	y	0.11	13	103	13	103	y	0.11	20	169	20	169	y	0.15	21	123	21	123	y	0.11	15	124	15	124	y	ENSMUSG00000027942.18	4933434E20Rik	chr3	protein_coding	RIKEN cDNA 4933434E20 gene
known_NIR_12497	chr3	89987170	89993753	+	89981152	89993753	A5SS	ENSMUST00000121503.8	known	1.00	120	0	120	0	n	1.00	112	0	112	0	n	1.00	187	0	187	0	n	1.00	154	0	154	0	n	1.00	276	0	276	0	n	1.00	134	0	134	0	n	0.69	191	84	191	84	y	1.00	115	0	115	0	n	1.00	114	0	114	0	n	1.00	197	0	197	0	n	1.00	148	0	148	0	n	1.00	182	0	182	0	n	ENSMUSG00000027940.19	Tpm3	chr3	protein_coding	tropomyosin 3, gamma
known_NIR_12498	chr3	89987303	89993753	+	89987170	89993753	A5SS	ENSMUST00000029549.16	known	0.00	0	120	0	120	n	0.00	0	112	0	112	n	0.00	0	187	0	187	n	0.01	1	154	1	154	n	0.01	2	276	2	276	y	0.00	0	134	0	134	n	0.01	1	191	1	191	n	0.00	0	115	0	115	n	0.00	0	114	0	114	n	0.01	2	197	2	197	y	0.00	0	148	0	148	n	0.00	0	182	0	182	n	ENSMUSG00000027940.19	Tpm3	chr3	protein_coding	tropomyosin 3, gamma
known_NIR_12499	chr3	89987924	89993753	+	89987170	89993753	A5SS	ENSMUST00000029549.16	known	0.00	0	120	0	120	n	0.00	0	112	0	112	n	0.01	1	187	1	187	n	0.00	0	154	0	154	n	0.00	0	276	0	276	n	0.01	2	134	2	134	y	0.00	0	191	0	191	n	0.01	1	115	1	115	n	0.00	0	114	0	114	n	0.00	0	197	0	197	n	0.00	0	148	0	148	n	0.00	0	182	0	182	n	ENSMUSG00000027940.19	Tpm3	chr3	protein_coding	tropomyosin 3, gamma
known_NIR_12500	chr3	89995051	89995708	+	89995051	89996355	A3SS	ENSMUST00000149432.8	known	0.99	199	3	199	3	y	0.98	131	2	131	2	y	1.00	263	0	263	0	n	0.98	183	3	183	3	y	0.98	284	6	284	6	y	0.99	148	1	148	1	n	0.60	230	154	230	154	y	0.98	128	2	128	2	y	0.98	117	2	117	2	y	1.00	247	1	247	1	n	0.98	141	3	141	3	y	0.98	212	4	212	4	y	ENSMUSG00000027940.19	Tpm3	chr3	protein_coding	tropomyosin 3, gamma
known_NIR_12501	chr3	89995051;89995783	89995708;89997104	+	89995051;89996430	89996355;89997104	MXE	ENSMUST00000121503.8	known	0.98	208.5	5.0	199;218	3;7	y	0.97	141.5	4.5	131;152	2;7	y	0.99	283.0	1.5	263;303	0;3	n	0.99	218.0	2.5	183;253	3;2	y	0.97	309.0	8.5	284;334	6;11	y	0.99	134.0	2.0	148;120	1;3	n	0.65	248.0	131.5	230;266	154;109	y	0.98	154.5	2.5	128;181	2;3	y	0.96	145.0	5.5	117;173	2;9	y	0.99	270.5	2.0	247;294	1;3	n	0.98	159.0	3.0	141;177	3;3	y	0.98	241.5	5.0	212;271	4;6	y	ENSMUSG00000027940.19	Tpm3	chr3	protein_coding	tropomyosin 3, gamma
known_NIR_12502	chr3	89996430	89997104	+	89995783	89997104	A5SS	ENSMUST00000149734.2	known	0.03	7	218	7	218	y	0.04	7	152	7	152	y	0.01	3	303	3	303	y	0.01	2	253	2	253	y	0.03	11	334	11	334	y	0.02	3	120	3	120	y	0.29	109	266	109	266	y	0.02	3	181	3	181	y	0.05	9	173	9	173	y	0.01	3	294	3	294	y	0.02	3	177	3	177	y	0.02	6	271	6	271	y	ENSMUSG00000027940.19	Tpm3	chr3	protein_coding	tropomyosin 3, gamma
known_NIR_12503	chr3	89997386;89998398	89998320;90006835	+	89997386	90006835	cassetteExon	ENSMUST00000119570.8	known	0.03	8.5	235	10;7	235	y	0.03	6.0	230	11;1	230	n	0.06	21.5	347	33;10	347	y	0.02	5.5	286	8;3	286	y	0.03	12.0	349	13;11	349	y	0.04	8.0	198	10;6	198	y	0.19	79.5	349	145;14	349	y	0.03	6.0	172	7;5	172	y	0.04	9.0	202	8;10	202	y	0.02	8.0	334	7;9	334	y	0.03	7.0	234	8;6	234	y	0.00	1.0	312	0;2	312	n	ENSMUSG00000027940.19	Tpm3	chr3	protein_coding	tropomyosin 3, gamma
known_NIR_12504	chr3	89998398	90006835	+	89998398	89999238	3pMXE	ENSMUST00000121503.8	known	0.54	7	6	7	6	y	0.50	1	1	1	1	n	0.83	10	2	10	2	y	0.43	3	4	3	4	n	0.85	11	2	11	2	y	0.75	6	2	6	2	n	0.10	14	123	14	123	y	0.83	5	1	5	1	n	0.83	10	2	10	2	y	0.60	9	6	9	6	y	0.50	6	6	6	6	y	0.33	2	4	2	4	n	ENSMUSG00000027940.19	Tpm3	chr3	protein_coding	tropomyosin 3, gamma
known_NIR_12505	chr3	90120047	90120241	-	90120060	90120241	A3SS	ENSMUST00000196205.5	known	0.00	3	1855	3	1855	y	0.00	0	2309	0	2309	n	0.00	0	2504	0	2504	n	0.00	0	1333	0	1333	n	0.00	0	2375	0	2375	n	0.00	0	1479	0	1479	n	0.00	0	2387	0	2387	n	0.00	0	1245	0	1245	n	0.00	0	1525	0	1525	n	0.00	0	2191	0	2191	n	0.00	0	2125	0	2125	n	0.00	0	2255	0	2255	n	ENSMUSG00000090733.7	Rps27	chr3	protein_coding	ribosomal protein S27
known_NIR_12506	chr3	90120608	90120917	-	90120608	90120688	A5SS	ENSMUST00000200305.2	known	0.99	1914	12	1914	12	y	1.00	2053	7	2053	7	y	1.00	2651	8	2651	8	y	1.00	1467	6	1467	6	y	1.00	2321	11	2321	11	y	1.00	1476	1	1476	1	n	1.00	2480	5	2480	5	y	1.00	1348	6	1348	6	y	0.99	1435	12	1435	12	y	0.99	1991	12	1991	12	y	0.99	1822	10	1822	10	y	0.99	2040	12	2040	12	y	ENSMUSG00000090733.7	Rps27	chr3	protein_coding	ribosomal protein S27
known_NIR_12507	chr3	90120608	90120917	-	90120805	90120917	A3SS	ENSMUST00000197028.5	known	1.00	1914	2	1914	2	y	1.00	2053	0	2053	0	n	1.00	2651	1	2651	1	n	1.00	1467	1	1467	1	n	1.00	2321	0	2321	0	n	1.00	1476	0	1476	0	n	1.00	2480	0	2480	0	n	1.00	1348	0	1348	0	n	1.00	1435	0	1435	0	n	1.00	1991	0	1991	0	n	1.00	1822	1	1822	1	n	1.00	2040	0	2040	0	n	ENSMUSG00000090733.7	Rps27	chr3	protein_coding	ribosomal protein S27
known_NIR_12508	chr3	90120608;90120805	90120688;90120917	-	90120608	90120917	cassetteExon	ENSMUST00000197361.5	known	0.00	7.0	1914	12;2	1914	y	0.00	3.5	2053	7;0	2053	n	0.00	4.5	2651	8;1	2651	n	0.00	3.5	1467	6;1	1467	n	0.00	5.5	2321	11;0	2321	n	0.00	0.5	1476	1;0	1476	n	0.00	2.5	2480	5;0	2480	n	0.00	3.0	1348	6;0	1348	n	0.00	6.0	1435	12;0	1435	n	0.00	6.0	1991	12;0	1991	n	0.00	5.5	1822	10;1	1822	n	0.00	6.0	2040	12;0	2040	n	ENSMUSG00000090733.7	Rps27	chr3	protein_coding	ribosomal protein S27
known_NIR_12509	chr3	90128329	90129544	+	90121129	90129544	A5SS	ENSMUST00000107373.8	known	1.00	17	0	17	0	n	1.00	24	0	24	0	n	0.96	23	1	23	1	n	1.00	20	0	20	0	n	0.92	22	2	22	2	y	0.82	9	2	9	2	y	0.97	36	1	36	1	n	1.00	10	0	10	0	n	0.91	21	2	21	2	y	0.92	24	2	24	2	y	0.94	17	1	17	1	n	1.00	33	0	33	0	n	ENSMUSG00000027935.15	Rab13	chr3	protein_coding	RAB13, member RAS oncogene family
known_NIR_12510	chr3	90141309	90142604	+	90141309	90142690	A3SS	ENSMUST00000029546.15	known	0.02	5	305	5	305	y	0.01	4	362	4	362	y	0.02	6	348	6	348	y	0.00	0	270	0	270	n	0.01	4	405	4	405	y	0.01	2	192	2	192	y	0.01	5	369	5	369	y	0.00	0	212	0	212	n	0.01	3	258	3	258	y	0.02	8	454	8	454	y	0.00	0	355	0	355	n	0.00	0	407	0	407	n	ENSMUSG00000027937.16	Jtb	chr3	protein_coding	jumping translocation breakpoint
known_NIR_12511	chr3	90161865	90166693	+	90161865	90164424	A3SS&ES	ENSMUST00000149422.8	known	0.02	1	42	1	42	n	0.10	2	19	2	19	y	0.05	2	37	2	37	y	0.03	1	29	1	29	n	0.00	0	25	0	25	n	0.10	2	18	2	18	y	0.06	2	30	2	30	y	0.09	2	21	2	21	y	0.04	1	25	1	25	n	0.12	5	37	5	37	y	0.02	1	44	1	44	n	0.10	4	38	4	38	y	ENSMUSG00000027936.19	Crtc2	chr3	protein_coding	CREB regulated transcription coactivator 2
known_NIR_12512	chr3	90166529	90166693	+	90161865	90166693	A5SS	ENSMUST00000136970.8	known	0.97	34	1	34	1	n	0.92	24	2	24	2	y	0.93	25	2	25	2	y	0.98	47	1	47	1	n	1.00	45	0	45	0	n	0.89	17	2	17	2	y	0.95	36	2	36	2	y	0.93	25	2	25	2	y	0.97	31	1	31	1	n	0.90	47	5	47	5	y	0.97	29	1	29	1	n	0.92	44	4	44	4	y	ENSMUSG00000027936.19	Crtc2	chr3	protein_coding	CREB regulated transcription coactivator 2
known_NIR_12513	chr3	90170021;90170287	90170221;90170478	+	90170021	90170478	cassetteExon	ENSMUST00000029545.15	known	0.00	0.0	69	0;0	69	n	0.02	1.0	58	1;1	58	n	0.00	0.0	48	0;0	48	n	0.05	3.5	64	2;5	64	y	0.03	2.0	76	2;2	76	y	0.04	1.0	22	0;2	22	n	0.03	2.0	73	1;3	73	n	0.07	2.0	27	1;3	27	n	0.01	0.5	46	0;1	46	n	0.05	5.5	100	6;5	100	y	0.01	1.0	73	2;0	73	n	0.00	0.0	89	0;0	89	n	ENSMUSG00000027936.19	Crtc2	chr3	protein_coding	CREB regulated transcription coactivator 2
known_NIR_12514	chr3	90177435	90177520	+	90177428	90177520	A5SS	ENSMUST00000129564.8	known	0.11	1	8	1	8	n	0.00	0	3	0	3	n	0.29	2	5	2	5	n	0.00	0	6	0	6	n	0.17	2	10	2	10	y	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.14	1	6	1	6	n	0.00	0	9	0	9	n	0.29	2	5	2	5	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	ENSMUSG00000042404.17	Dennd4b	chr3	protein_coding	DENN/MADD domain containing 4B
known_NIR_12515	chr3	9018859	9028907	-	9018859	9069465	A5SS	ENSMUST00000120143.8	known	0.24	7	22	7	22	y	0.11	5	39	5	39	y	0.20	25	100	25	100	y	0.06	3	46	3	46	y	0.05	3	54	3	54	y	0.25	14	42	14	42	y	0.13	11	76	11	76	y	0.14	5	31	5	31	y	0.08	3	34	3	34	y	0.00	0	53	0	53	n	0.00	0	25	0	25	n	0.11	3	25	3	25	y	ENSMUSG00000027506.16	Tpd52	chr3	protein_coding	tumor protein D52
known_NIR_12516	chr3	9018859	9068348	-	9018859	9028907	5pMXE	ENSMUST00000091354.12	known	0.22	2	7	2	7	n	0.17	1	5	1	5	n	0.11	3	25	3	25	y	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000027506.16	Tpd52	chr3	protein_coding	tumor protein D52
known_NIR_12517	chr3	90258881	90259124	+	90258881	90259121	A3SS	ENSMUST00000199754.5	known	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.07	2	25	2	25	y	0.06	1	15	1	15	n	0.00	0	19	0	19	n	0.00	0	5	0	5	n	0.11	2	16	2	16	y	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	18	0	18	n	0.00	0	7	0	7	n	0.00	0	21	0	21	n	ENSMUSG00000042390.10	Gatad2b	chr3	protein_coding	GATA zinc finger domain containing 2B
known_NIR_12518	chr3	90365728	90365939	-	90365700	90365939	A3SS	ENSMUST00000029540.13	known	0.08	1	12	1	12	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.09	2	21	2	21	y	0.06	1	16	1	16	n	0.00	0	12	0	12	n	0.10	1	9	1	9	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.30	3	7	3	7	y	0.00	0	16	0	16	n	0.07	1	13	1	13	n	ENSMUSG00000027931.13	Npr1	chr3	protein_coding	natriuretic peptide receptor 1
known_NIR_12519	chr3	90397579	90398139	-	90397579	90397855	A5SS&ES	ENSMUST00000184877.8	known	0.00	0	50	0	50	n	0.07	2	26	2	26	y	0.06	3	51	3	51	y	0.04	2	53	2	53	y	0.00	0	47	0	47	n	0.00	0	35	0	35	n	0.03	2	70	2	70	y	0.00	0	39	0	39	n	0.00	0	32	0	32	n	0.06	4	62	4	62	y	0.04	2	44	2	44	y	0.01	1	75	1	75	n	ENSMUSG00000001018.16	Snapin	chr3	protein_coding	SNAP-associated protein
known_NIR_12520	chr3	90397579	90398139	-	90397579;90397901	90397855;90398139	ES	ENSMUST00000149884.2	known	0.00	0	44.0	0	50;38	n	0.07	2	26.5	2	26;27	y	0.05	3	53.0	3	51;55	y	0.04	2	52.0	2	53;51	y	0.00	0	56.0	0	47;65	n	0.00	0	30.0	0	35;25	n	0.03	2	61.5	2	70;53	y	0.00	0	40.0	0	39;41	n	0.00	0	28.0	0	32;24	n	0.06	4	61.0	4	62;60	y	0.05	2	35.0	2	44;26	y	0.02	1	61.5	1	75;48	n	ENSMUSG00000001018.16	Snapin	chr3	protein_coding	SNAP-associated protein
known_NIR_12521	chr3	90397901	90398144	-	90397901	90398139	A5SS	ENSMUST00000149884.2	known	0.10	4	38	4	38	y	0.00	0	27	0	27	n	0.02	1	55	1	55	n	0.07	4	51	4	51	y	0.02	1	65	1	65	n	0.07	2	25	2	25	y	0.05	3	53	3	53	y	0.05	2	41	2	41	y	0.11	3	24	3	24	y	0.03	2	60	2	60	y	0.10	3	26	3	26	y	0.11	6	48	6	48	y	ENSMUSG00000001018.16	Snapin	chr3	protein_coding	SNAP-associated protein
known_NIR_12522	chr3	90407414	90410403	-	90409560	90410403	3pMXE	ENSMUST00000146740.8	known	0.07	9	127	9	127	y	0.02	3	143	3	143	y	0.05	9	155	9	155	y	0.05	7	142	7	142	y	0.03	5	178	5	178	y	0.01	1	84	1	84	n	0.02	3	194	3	194	y	0.04	4	91	4	91	y	0.05	5	97	5	97	y	0.02	4	173	4	173	y	0.01	1	132	1	132	n	0.06	11	171	11	171	y	ENSMUSG00000001017.16	Chtop	chr3	protein_coding	chromatin target of PRMT1
known_NIR_12523	chr3	90407414;90409560	90409423;90410403	-	90407414	90410403	cassetteExon	ENSMUST00000107343.8	known	0.90	85.5	9	44;127	9	y	0.97	90.0	3	37;143	3	y	0.92	100.0	9	45;155	9	y	0.93	98.5	7	55;142	7	y	0.96	124.0	5	70;178	5	y	0.98	55.5	1	27;84	1	n	0.98	126.5	3	59;194	3	y	0.94	58.5	4	26;91	4	y	0.94	74.5	5	52;97	5	y	0.97	122.0	4	71;173	4	y	0.99	91.5	1	51;132	1	n	0.91	107.5	11	44;171	11	y	ENSMUSG00000001017.16	Chtop	chr3	protein_coding	chromatin target of PRMT1
known_NIR_12524	chr3	90410586	90413415	-	90410589	90413415	A3SS	ENSMUST00000107343.8	known	0.38	39	65	39	65	y	0.28	24	62	24	62	y	0.37	41	70	41	70	y	0.53	57	51	57	51	y	0.45	73	89	73	89	y	0.49	34	36	34	36	y	0.38	50	82	50	82	y	0.39	24	37	24	37	y	0.34	33	63	33	63	y	0.46	65	77	65	77	y	0.45	36	44	36	44	y	0.45	51	63	51	63	y	ENSMUSG00000001017.16	Chtop	chr3	protein_coding	chromatin target of PRMT1
known_NIR_12525	chr3	90410589;90412785	90412702;90413415	-	90410589	90413415	cassetteExon	ENSMUST00000107343.8	known	0.01	0.5	65	0;1	65	n	0.02	1.5	62	3;0	62	n	0.01	0.5	70	0;1	70	n	0.00	0.0	51	0;0	51	n	0.03	2.5	89	2;3	89	y	0.00	0.0	36	0;0	36	n	0.01	1.0	82	0;2	82	n	0.00	0.0	37	0;0	37	n	0.00	0.0	63	0;0	63	n	0.00	0.0	77	0;0	77	n	0.00	0.0	44	0;0	44	n	0.02	1.0	63	1;1	63	n	ENSMUSG00000001017.16	Chtop	chr3	protein_coding	chromatin target of PRMT1
known_NIR_12526	chr3	90412785	90413415	-	90410586	90413415	A3SS	ENSMUST00000076639.11	known	0.03	1	39	1	39	n	0.00	0	24	0	24	n	0.02	1	41	1	41	n	0.00	0	57	0	57	n	0.04	3	73	3	73	y	0.00	0	34	0	34	n	0.04	2	50	2	50	y	0.00	0	24	0	24	n	0.00	0	33	0	33	n	0.00	0	65	0	65	n	0.00	0	36	0	36	n	0.02	1	51	1	51	n	ENSMUSG00000001017.16	Chtop	chr3	protein_coding	chromatin target of PRMT1
known_NIR_12527	chr3	90413568	90414852	-	90414565	90414852	A3SS	ENSMUST00000107344.8	known	1.00	60	0	60	0	n	1.00	28	0	28	0	n	1.00	70	0	70	0	n	0.98	57	1	57	1	n	0.96	75	3	75	3	y	1.00	49	0	49	0	n	1.00	69	0	69	0	n	1.00	30	0	30	0	n	0.98	52	1	52	1	n	0.99	75	1	75	1	n	1.00	53	0	53	0	n	1.00	58	0	58	0	n	ENSMUSG00000001017.16	Chtop	chr3	protein_coding	chromatin target of PRMT1
known_NIR_12528	chr3	90414933	90416081	-	90414933	90416498	A5SS	ENSMUST00000107343.8	known	0.00	0	66	0	66	n	0.00	0	51	0	51	n	0.00	0	100	0	100	n	0.00	0	84	0	84	n	0.00	0	118	0	118	n	0.00	0	53	0	53	n	0.01	1	95	1	95	n	0.00	0	71	0	71	n	0.02	1	64	1	64	n	0.02	2	97	2	97	y	0.02	2	79	2	79	y	0.00	0	87	0	87	n	ENSMUSG00000001017.16	Chtop	chr3	protein_coding	chromatin target of PRMT1
known_NIR_12529	chr3	90418671	90419286	-	90418671	90419303	A5SS	ENSMUST00000060738.9	known	0.02	13	775	13	775	y	0.01	6	812	6	812	y	0.02	15	698	15	698	y	0.01	5	690	5	690	y	0.02	13	834	13	834	y	0.01	4	375	4	375	y	0.01	13	1013	13	1013	y	0.01	6	448	6	448	y	0.00	3	628	3	628	y	0.01	10	1035	10	1035	y	0.01	12	961	12	961	y	0.01	5	987	5	987	y	ENSMUSG00000044080.10	S100a1	chr3	protein_coding	S100 calcium binding protein A1
known_NIR_12530	chr3	90444724	90449307	+	90444724	90449301	A3SS	ENSMUST00000098911.10	known	0.00	0	47	0	47	n	0.00	0	48	0	48	n	0.00	0	30	0	30	n	0.00	0	58	0	58	n	0.00	0	63	0	63	n	0.00	0	20	0	20	n	0.13	11	76	11	76	y	0.00	0	21	0	21	n	0.00	0	38	0	38	n	0.00	0	64	0	64	n	0.00	0	64	0	64	n	0.00	0	69	0	69	n	ENSMUSG00000074457.11	S100a16	chr3	protein_coding	S100 calcium binding protein A16
known_NIR_12531	chr3	90446328	90449301	+	90444724	90449301	A5SS	ENSMUST00000098911.10	known	0.00	0	47	0	47	n	0.00	0	48	0	48	n	0.06	2	30	2	30	y	0.00	0	58	0	58	n	0.03	2	63	2	63	y	0.00	0	20	0	20	n	0.03	2	76	2	76	y	0.00	0	21	0	21	n	0.00	0	38	0	38	n	0.06	4	64	4	64	y	0.02	1	64	1	64	n	0.01	1	69	1	69	n	ENSMUSG00000074457.11	S100a16	chr3	protein_coding	S100 calcium binding protein A16
known_NIR_12532	chr3	90446772	90449301	+	90444724	90449301	A5SS	ENSMUST00000098911.10	known	0.00	0	47	0	47	n	0.02	1	48	1	48	n	0.00	0	30	0	30	n	0.03	2	58	2	58	y	0.05	3	63	3	63	y	0.00	0	20	0	20	n	0.05	4	76	4	76	y	0.00	0	21	0	21	n	0.00	0	38	0	38	n	0.09	6	64	6	64	y	0.00	0	64	0	64	n	0.00	0	69	0	69	n	ENSMUSG00000074457.11	S100a16	chr3	protein_coding	S100 calcium binding protein A16
known_NIR_12533	chr3	90446772	90449301	+	90446328	90449301	A5SS	ENSMUST00000107334.8	known	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	2	0	2	0	n	0.60	3	2	3	2	n	-	-	-	-	-	-	0.67	4	2	4	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.60	6	4	6	4	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000074457.11	S100a16	chr3	protein_coding	S100 calcium binding protein A16
known_NIR_12534	chr3	90448497	90449301	+	90444724	90449301	A5SS	ENSMUST00000098911.10	known	0.00	0	47	0	47	n	0.02	1	48	1	48	n	0.06	2	30	2	30	y	0.00	0	58	0	58	n	0.00	0	63	0	63	n	0.00	0	20	0	20	n	0.00	0	76	0	76	n	0.00	0	21	0	21	n	0.00	0	38	0	38	n	0.00	0	64	0	64	n	0.00	0	64	0	64	n	0.00	0	69	0	69	n	ENSMUSG00000074457.11	S100a16	chr3	protein_coding	S100 calcium binding protein A16
known_NIR_12535	chr3	90448501	90449301	+	90444724	90449301	A5SS	ENSMUST00000098911.10	known	0.00	0	47	0	47	n	0.00	0	48	0	48	n	0.00	0	30	0	30	n	0.00	0	58	0	58	n	0.00	0	63	0	63	n	0.09	2	20	2	20	y	0.00	0	76	0	76	n	0.00	0	21	0	21	n	0.00	0	38	0	38	n	0.00	0	64	0	64	n	0.00	0	64	0	64	n	0.00	0	69	0	69	n	ENSMUSG00000074457.11	S100a16	chr3	protein_coding	S100 calcium binding protein A16
known_NIR_12536	chr3	90448624	90449301	+	90444724	90449301	A5SS	ENSMUST00000098911.10	known	0.15	8	47	8	47	y	0.09	5	48	5	48	y	0.25	10	30	10	30	y	0.06	4	58	4	58	y	0.23	19	63	19	63	y	0.31	9	20	9	20	y	0.12	10	76	10	76	y	0.25	7	21	7	21	y	0.00	0	38	0	38	n	0.04	3	64	3	64	y	0.06	4	64	4	64	y	0.15	12	69	12	69	y	ENSMUSG00000074457.11	S100a16	chr3	protein_coding	S100 calcium binding protein A16
known_NIR_12537	chr3	90448624	90449301	+	90446328	90449301	A5SS	ENSMUST00000107334.8	known	1.00	8	0	8	0	n	1.00	5	0	5	0	n	0.83	10	2	10	2	y	1.00	4	0	4	0	n	0.90	19	2	19	2	y	1.00	9	0	9	0	n	0.83	10	2	10	2	y	1.00	7	0	7	0	n	-	-	-	-	-	-	0.43	3	4	3	4	n	0.80	4	1	4	1	n	0.92	12	1	12	1	n	ENSMUSG00000074457.11	S100a16	chr3	protein_coding	S100 calcium binding protein A16
known_NIR_12538	chr3	90448624	90449301	+	90446772	90449301	A5SS	ENSMUST00000150833.8	known	1.00	8	0	8	0	n	0.83	5	1	5	1	n	1.00	10	0	10	0	n	0.67	4	2	4	2	n	0.86	19	3	19	3	y	1.00	9	0	9	0	n	0.71	10	4	10	4	y	1.00	7	0	7	0	n	-	-	-	-	-	-	0.33	3	6	3	6	n	1.00	4	0	4	0	n	1.00	12	0	12	0	n	ENSMUSG00000074457.11	S100a16	chr3	protein_coding	S100 calcium binding protein A16
known_NIR_12539	chr3	90448624	90449301	+	90448497	90449301	A5SS	ENSMUST00000107333.8	known	1.00	8	0	8	0	n	0.83	5	1	5	1	n	0.83	10	2	10	2	y	1.00	4	0	4	0	n	1.00	19	0	19	0	n	1.00	9	0	9	0	n	1.00	10	0	10	0	n	1.00	7	0	7	0	n	-	-	-	-	-	-	1.00	3	0	3	0	n	1.00	4	0	4	0	n	1.00	12	0	12	0	n	ENSMUSG00000074457.11	S100a16	chr3	protein_coding	S100 calcium binding protein A16
known_NIR_12540	chr3	90448624	90449301	+	90448501	90449301	A5SS	ENSMUST00000107331.8	known	1.00	8	0	8	0	n	1.00	5	0	5	0	n	1.00	10	0	10	0	n	1.00	4	0	4	0	n	1.00	19	0	19	0	n	0.82	9	2	9	2	y	1.00	10	0	10	0	n	1.00	7	0	7	0	n	-	-	-	-	-	-	1.00	3	0	3	0	n	1.00	4	0	4	0	n	1.00	12	0	12	0	n	ENSMUSG00000074457.11	S100a16	chr3	protein_coding	S100 calcium binding protein A16
known_NIR_12541	chr3	90602601	90602975	-	90602604	90602975	A3SS	ENSMUST00000069960.12	known	0.29	2	5	2	5	n	0.17	4	19	4	19	y	0.22	31	108	31	108	y	0.09	1	10	1	10	n	0.28	27	70	27	70	y	0.25	16	47	16	47	y	0.16	14	73	14	73	y	0.19	7	29	7	29	y	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.18	3	14	3	14	y	ENSMUSG00000056071.13	S100a9	chr3	protein_coding	S100 calcium binding protein A9 (calgranulin B)
known_NIR_12542	chr3	94296903	94297707	+	94296903	94298381	A3SS	ENSMUST00000029795.10	known	0.05	3	62	3	62	y	0.03	2	66	2	66	y	0.00	0	7	0	7	n	0.01	1	119	1	119	n	0.05	4	71	4	71	y	0.00	0	13	0	13	n	0.01	1	99	1	99	n	0.00	0	23	0	23	n	0.01	1	74	1	74	n	0.05	7	122	7	122	y	0.04	3	70	3	70	y	0.02	2	116	2	116	y	ENSMUSG00000028150.15	Rorc	chr3	protein_coding	RAR-related orphan receptor gamma
known_NIR_12543	chr3	94296903	94298381	+	94296903	94304499	A3SS	ENSMUST00000200009.2	known	0.97	62	2	62	2	y	0.97	66	2	66	2	y	1.00	7	0	7	0	n	0.99	119	1	119	1	n	0.99	71	1	71	1	n	1.00	13	0	13	0	n	0.98	99	2	99	2	y	1.00	23	0	23	0	n	1.00	74	0	74	0	n	0.98	122	2	122	2	y	0.99	70	1	70	1	n	0.99	116	1	116	1	n	ENSMUSG00000028150.15	Rorc	chr3	protein_coding	RAR-related orphan receptor gamma
known_NIR_12544	chr3	94300447	94304499	+	94296903	94304499	A5SS	ENSMUST00000200009.2	known	0.98	129	2	129	2	y	0.98	131	2	131	2	y	1.00	16	0	16	0	n	0.99	187	1	187	1	n	0.99	126	1	126	1	n	1.00	21	0	21	0	n	0.99	168	2	168	2	y	1.00	33	0	33	0	n	1.00	125	0	125	0	n	0.99	223	2	223	2	y	0.99	156	1	156	1	n	0.99	150	1	150	1	n	ENSMUSG00000028150.15	Rorc	chr3	protein_coding	RAR-related orphan receptor gamma
known_NIR_12545	chr3	94331108	94331820	+	94331108	94331808	A3SS	ENSMUST00000166032.8	known	0.00	0	16	0	16	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.20	3	12	3	12	y	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	ENSMUSG00000041912.13	Tdrkh	chr3	protein_coding	tudor and KH domain containing protein
known_NIR_12546	chr3	94354650	94357458	+	94354650	94355093	3pMXE	ENSMUST00000029786.14	known	0.00	0	104	0	104	n	0.02	2	102	2	102	y	0.01	1	92	1	92	n	0.00	0	112	0	112	n	0.00	0	122	0	122	n	0.00	0	56	0	56	n	0.01	2	150	2	150	y	0.00	0	50	0	50	n	0.01	1	119	1	119	n	0.00	0	184	0	184	n	0.00	0	164	0	164	n	0.01	2	162	2	162	y	ENSMUSG00000028140.14	Mrpl9	chr3	protein_coding	mitochondrial ribosomal protein L9
known_NIR_12547	chr3	94408578	94409477	-	94409372	94409477	A3SS	ENSMUST00000029783.16	known	0.69	11	5	11	5	y	0.56	9	7	9	7	y	0.45	14	17	14	17	y	0.35	8	15	8	15	y	0.40	8	12	8	12	y	0.00	0	12	0	12	n	0.30	9	21	9	21	y	0.42	8	11	8	11	y	0.18	2	9	2	9	y	0.38	10	16	10	16	y	0.33	2	4	2	4	n	0.36	9	16	9	16	y	ENSMUSG00000028136.16	Snx27	chr3	protein_coding	sorting nexin family member 27
known_NIR_12548	chr3	94546333	94566032	-	94546333;94546776	94546702;94566032	ES	ENSMUST00000006123.11	known	0.17	1	5.0	1	6;4	n	0.36	2	3.5	2	4;3	n	0.00	0	3.5	0	4;3	n	0.00	0	8.0	0	13;3	n	0.22	4	14.5	4	21;8	y	0.00	0	2.5	0	2;3	n	0.32	3	6.5	3	6;7	y	0.00	0	6.5	0	10;3	n	0.00	0	4.5	0	4;5	n	0.42	4	5.5	4	6;5	y	0.00	0	3.5	0	5;2	n	0.25	4	12.0	4	16;8	y	ENSMUSG00000005968.15	Tuft1	chr3	protein_coding	tuftelin 1
known_NIR_12549	chr3	94600969	94604299	+	94600969	94604101	A3SS&ES	ENSMUST00000174223.2	known	0.00	1	1201	1	1201	n	0.01	5	371	5	371	y	0.10	2	19	2	19	y	0.00	4	2393	4	2393	y	0.00	3	827	3	827	y	0.00	0	31	0	31	n	0.01	2	292	2	292	y	0.01	1	87	1	87	n	0.00	1	1133	1	1133	n	0.00	1	517	1	517	n	0.00	0	1150	0	1150	n	0.00	0	981	0	981	n	ENSMUSG00000068877.13	Selenbp2	chr3	protein_coding	selenium binding protein 2
known_NIR_12550	chr3	94600969	94604299	+	94600969;94604157	94604101;94604299	ES	ENSMUST00000090848.10	known	0.00	1	1166.0	1	1201;1131	n	0.01	5	382.0	5	371;393	y	0.10	2	18.0	2	19;17	y	0.00	4	2383.5	4	2393;2374	y	0.00	3	819.5	3	827;812	y	0.00	0	31.5	0	31;32	n	0.01	2	303.0	2	292;314	y	0.01	1	75.0	1	87;63	n	0.00	1	1099.0	1	1133;1065	n	0.00	1	538.5	1	517;560	n	0.00	0	1111.0	0	1150;1072	n	0.00	0	985.0	0	981;989	n	ENSMUSG00000068877.13	Selenbp2	chr3	protein_coding	selenium binding protein 2
known_NIR_12551	chr3	94600969;94604411	94604299;94605350	+	94600969;94604797	94604101;94605350	MXE	ENSMUST00000131650.9	known	0.01	17.5	1282.5	1;34	1201;1364	n	0.01	6.0	443.0	5;7	371;515	y	0.04	1.5	35.5	2;1	19;52	n	0.01	30.0	2876.0	4;56	2393;3359	y	0.01	10.0	938.0	3;17	827;1049	y	0.00	0.0	37.5	0;0	31;44	n	0.01	4.5	412.5	2;7	292;533	y	0.02	2.0	104.5	1;3	87;122	n	0.01	15.0	1395.0	1;29	1133;1657	n	0.01	5.0	729.5	1;9	517;942	n	0.01	10.0	1508.0	0;20	1150;1866	n	0.01	11.5	1123.0	0;23	981;1265	n	ENSMUSG00000068877.13	Selenbp2	chr3	protein_coding	selenium binding protein 2
known_NIR_12552	chr3	94604157	94604347	+	94604157	94604299	A3SS	ENSMUST00000090848.10	known	0.00	0	1131	0	1131	n	0.01	2	393	2	393	y	0.00	0	17	0	17	n	0.00	0	2374	0	2374	n	0.00	0	812	0	812	n	0.00	0	32	0	32	n	0.00	0	314	0	314	n	0.00	0	63	0	63	n	0.00	0	1065	0	1065	n	0.00	0	560	0	560	n	0.00	0	1072	0	1072	n	0.00	0	989	0	989	n	ENSMUSG00000068877.13	Selenbp2	chr3	protein_coding	selenium binding protein 2
known_NIR_12553	chr3	94604411	94605350	+	94604411	94604612	A3SS	ENSMUST00000132162.9	known	0.07	34	466	34	466	y	0.04	7	171	7	171	y	0.07	1	13	1	13	n	0.05	56	1138	56	1138	y	0.05	17	350	17	350	y	0.00	0	14	0	14	n	0.04	7	177	7	177	y	0.06	3	47	3	47	y	0.05	29	563	29	563	y	0.03	9	297	9	297	y	0.03	20	584	20	584	y	0.04	23	501	23	501	y	ENSMUSG00000068877.13	Selenbp2	chr3	protein_coding	selenium binding protein 2
known_NIR_12554	chr3	94604411	94605350	+	94604411;94604797	94604612;94605350	ES	ENSMUST00000090848.10	known	0.04	34	915.0	34	466;1364	y	0.02	7	343.0	7	171;515	y	0.03	1	32.5	1	13;52	n	0.02	56	2248.5	56	1138;3359	y	0.02	17	699.5	17	350;1049	y	0.00	0	29.0	0	14;44	n	0.02	7	355.0	7	177;533	y	0.03	3	84.5	3	47;122	y	0.03	29	1110.0	29	563;1657	y	0.01	9	619.5	9	297;942	y	0.02	20	1225.0	20	584;1866	y	0.03	23	883.0	23	501;1265	y	ENSMUSG00000068877.13	Selenbp2	chr3	protein_coding	selenium binding protein 2
known_NIR_12555	chr3	94607019	94609627	+	94607019	94607245	3pMXE	ENSMUST00000131650.9	known	0.00	0	1600	0	1600	n	0.00	0	658	0	658	n	0.00	0	32	0	32	n	0.00	0	3443	0	3443	n	0.00	0	1140	0	1140	n	0.00	0	31	0	31	n	0.00	2	534	2	534	y	0.00	0	108	0	108	n	0.00	0	1599	0	1599	n	0.00	0	826	0	826	n	0.00	0	1918	0	1918	n	0.00	0	1361	0	1361	n	ENSMUSG00000068877.13	Selenbp2	chr3	protein_coding	selenium binding protein 2
known_NIR_12556	chr3	94607019	94609627	+	94607019;94607423	94607245;94609627	ES	ENSMUST00000090848.10	known	0.00	0	1341.0	0	1600;1082	n	0.00	0	563.5	0	658;469	n	0.00	0	23.0	0	32;14	n	0.00	0	2834.0	0	3443;2225	n	0.00	0	903.0	0	1140;666	n	0.00	0	29.5	0	31;28	n	0.00	2	425.0	2	534;316	y	0.00	0	87.0	0	108;66	n	0.00	0	1354.5	0	1599;1110	n	0.00	0	676.0	0	826;526	n	0.00	0	1612.0	0	1918;1306	n	0.00	0	1174.0	0	1361;987	n	ENSMUSG00000068877.13	Selenbp2	chr3	protein_coding	selenium binding protein 2
known_NIR_12557	chr3	94685399	94685511	-	94685375	94685511	A3SS	ENSMUST00000107272.7	known	0.17	3	15	3	15	y	0.52	12	11	12	11	y	0.55	23	19	23	19	y	0.26	9	25	9	25	y	0.33	12	24	12	24	y	0.50	14	14	14	14	y	0.38	10	16	10	16	y	0.36	14	25	14	25	y	0.27	4	11	4	11	y	0.53	18	16	18	16	y	0.41	9	13	9	13	y	0.35	12	22	12	22	y	ENSMUSG00000068876.17	Cgn	chr3	protein_coding	cingulin
known_NIR_12558	chr3	94761385	94768107	+	94761385	94763354	A3SS&ES	ENSMUST00000107269.2	known	0.15	2	11	2	11	y	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.20	3	12	3	12	y	0.00	0	10	0	10	n	0.25	1	3	1	3	n	0.33	5	10	5	10	y	0.08	1	11	1	11	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.27	3	8	3	8	y	ENSMUSG00000038902.15	Pogz	chr3	protein_coding	pogo transposable element with ZNF domain
known_NIR_12559	chr3	94761385	94768107	+	94761385;94763512	94763354;94768107	ES	ENSMUST00000107270.9	known	0.18	2	9.0	2	11;7	y	0.00	0	6.0	0	8;4	n	0.00	0	9.5	0	13;6	n	0.23	3	10.0	3	12;8	y	0.00	0	9.5	0	10;9	n	0.22	1	3.5	1	3;4	n	0.38	5	8.0	5	10;6	y	0.10	1	9.5	1	11;8	n	0.00	0	5.0	0	5;5	n	0.00	0	5.0	0	8;2	n	0.00	0	4.0	0	2;6	n	0.25	3	9.0	3	8;10	y	ENSMUSG00000038902.15	Pogz	chr3	protein_coding	pogo transposable element with ZNF domain
known_NIR_12560	chr3	94771689	94771796	+	94771689	94771769	A3SS	ENSMUST00000107270.9	known	0.08	1	11	1	11	n	0.25	2	6	2	6	n	0.07	1	13	1	13	n	0.17	2	10	2	10	y	0.12	2	14	2	14	y	0.29	2	5	2	5	n	0.00	0	14	0	14	n	0.07	1	13	1	13	n	0.08	1	11	1	11	n	0.00	0	19	0	19	n	0.00	0	7	0	7	n	0.13	2	13	2	13	y	ENSMUSG00000038902.15	Pogz	chr3	protein_coding	pogo transposable element with ZNF domain
known_NIR_12561	chr3	94779738	94780953	+	94779738	94781905	A3SS	ENSMUST00000107270.9	known	0.00	0	7	0	7	n	0.25	1	3	1	3	n	0.17	3	15	3	15	y	0.09	2	21	2	21	y	0.00	0	15	0	15	n	0.07	1	13	1	13	n	0.00	0	10	0	10	n	0.11	1	8	1	8	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.27	3	8	3	8	y	0.00	0	6	0	6	n	ENSMUSG00000038902.15	Pogz	chr3	protein_coding	pogo transposable element with ZNF domain
known_NIR_12562	chr3	94861562	94862326	+	94861562	94862074	A3SS&ES	ENSMUST00000145472.8	known	1.00	5	0	5	0	n	1.00	5	0	5	0	n	1.00	12	0	12	0	n	1.00	11	0	11	0	n	0.88	15	2	15	2	y	1.00	3	0	3	0	n	1.00	9	0	9	0	n	1.00	12	0	12	0	n	1.00	6	0	6	0	n	1.00	7	0	7	0	n	1.00	3	0	3	0	n	1.00	5	0	5	0	n	ENSMUSG00000005774.13	Rfx5	chr3	protein_coding	regulatory factor X, 5 (influences HLA class II expression)
known_NIR_12563	chr3	94861562;94862100	94862074;94862326	+	94861562	94862326	cassetteExon	ENSMUST00000137088.8	known	0.00	0.0	5	0;0	5	n	0.00	0.0	5	0;0	5	n	0.00	0.0	12	0;0	12	n	0.04	0.5	11	0;1	11	n	0.14	2.5	15	2;3	15	y	0.00	0.0	3	0;0	3	n	0.05	0.5	9	0;1	9	n	0.00	0.0	12	0;0	12	n	0.00	0.0	6	0;0	6	n	0.00	0.0	7	0;0	7	n	0.00	0.0	3	0;0	3	n	0.17	1.0	5	0;2	5	n	ENSMUSG00000005774.13	Rfx5	chr3	protein_coding	regulatory factor X, 5 (influences HLA class II expression)
known_NIR_12564	chr3	94862447	94862663	+	94862457	94862663	A5SS	ENSMUST00000107260.9	known	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.36	4	7	4	7	y	0.00	0	14	0	14	n	0.26	5	14	5	14	y	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.14	1	6	1	6	n	0.00	0	9	0	9	n	0.09	2	21	2	21	y	0.00	0	5	0	5	n	0.19	3	13	3	13	y	ENSMUSG00000005774.13	Rfx5	chr3	protein_coding	regulatory factor X, 5 (influences HLA class II expression)
known_NIR_12565	chr3	94882396	94891294	+	94882396	94900277	A3SS	ENSMUST00000167008.8	known	1.00	19	0	19	0	n	1.00	16	0	16	0	n	1.00	42	0	42	0	n	0.96	43	2	43	2	y	0.97	36	1	36	1	n	0.91	20	2	20	2	y	1.00	34	0	34	0	n	1.00	22	0	22	0	n	1.00	20	0	20	0	n	0.94	47	3	47	3	y	1.00	33	0	33	0	n	0.98	45	1	45	1	n	ENSMUSG00000038861.15	Pi4kb	chr3	protein_coding	phosphatidylinositol 4-kinase beta
known_NIR_12566	chr3	94882396	94900277	+	94882396;94892230	94891294;94900277	ES	ENSMUST00000072287.12	known	0.00	0	21.0	0	19;23	n	0.00	0	19.5	0	16;23	n	0.00	0	39.0	0	42;36	n	0.05	2	39.0	2	43;35	y	0.02	1	45.5	1	36;55	n	0.09	2	21.5	2	20;23	y	0.00	0	40.5	0	34;47	n	0.00	0	24.5	0	22;27	n	0.00	0	24.5	0	20;29	n	0.06	3	51.0	3	47;55	y	0.00	0	33.5	0	33;34	n	0.02	1	44.0	1	45;43	n	ENSMUSG00000038861.15	Pi4kb	chr3	protein_coding	phosphatidylinositol 4-kinase beta
known_NIR_12567	chr3	94892230	94900277	+	94882396	94900277	A5SS	ENSMUST00000167008.8	known	1.00	23	0	23	0	n	1.00	23	0	23	0	n	1.00	36	0	36	0	n	0.95	35	2	35	2	y	0.98	55	1	55	1	n	0.92	23	2	23	2	y	1.00	47	0	47	0	n	1.00	27	0	27	0	n	1.00	29	0	29	0	n	0.95	55	3	55	3	y	1.00	34	0	34	0	n	0.98	43	1	43	1	n	ENSMUSG00000038861.15	Pi4kb	chr3	protein_coding	phosphatidylinositol 4-kinase beta
known_NIR_12568	chr3	94892230;94896658	94896614;94900277	+	94892230	94900277	cassetteExon	ENSMUST00000072287.12	known	0.16	4.5	23	4;5	23	y	0.19	5.5	23	7;4	23	y	0.13	5.5	36	6;5	36	y	0.10	4.0	35	5;3	35	y	0.08	4.5	55	5;4	55	y	0.06	1.5	23	1;2	23	n	0.14	7.5	47	7;8	47	y	0.11	3.5	27	4;3	27	y	0.08	2.5	29	3;2	29	y	0.07	4.0	55	4;4	55	y	0.15	6.0	34	4;8	34	y	0.03	1.5	43	2;1	43	n	ENSMUSG00000038861.15	Pi4kb	chr3	protein_coding	phosphatidylinositol 4-kinase beta
known_NIR_12569	chr3	94919787	94922422	-	94919787	94921144	A5SS&ES	ENSMUST00000132195.8	known	0.40	2	3	2	3	n	0.00	0	2	0	2	n	0.36	9	16	9	16	y	0.25	1	3	1	3	n	0.23	3	10	3	10	y	0.37	7	12	7	12	y	0.00	0	5	0	5	n	0.43	6	8	6	8	y	0.73	11	4	11	4	y	0.40	4	6	4	6	y	0.50	2	2	2	2	n	0.08	1	12	1	12	n	ENSMUSG00000019338.14	Zfp687	chr3	protein_coding	zinc finger protein 687
known_NIR_12570	chr3	94919787	94922631	-	94919787	94922422	5pMXE	ENSMUST00000019482.8	known	0.50	2	2	2	2	n	-	-	-	-	-	-	0.31	4	9	4	9	y	0.80	4	1	4	1	n	0.77	10	3	10	3	y	0.42	5	7	5	7	y	1.00	2	0	2	0	n	0.33	3	6	3	6	n	0.27	4	11	4	11	y	0.60	6	4	6	4	y	0.67	4	2	4	2	n	0.80	4	1	4	1	n	ENSMUSG00000019338.14	Zfp687	chr3	protein_coding	zinc finger protein 687
known_NIR_12571	chr3	94919787;94921239	94921144;94922422	-	94919787	94922422	cassetteExon	ENSMUST00000019482.8	known	0.43	1.5	2	3;0	2	n	1.00	1.0	0	2;0	0	n	0.56	11.5	9	16;7	9	y	0.60	1.5	1	3;0	1	n	0.65	5.5	3	10;1	3	n	0.46	6.0	7	12;0	7	n	1.00	3.0	0	5;1	0	n	0.40	4.0	6	8;0	6	n	0.15	2.0	11	4;0	11	n	0.47	3.5	4	6;1	4	n	0.33	1.0	2	2;0	2	n	0.87	6.5	1	12;1	1	n	ENSMUSG00000019338.14	Zfp687	chr3	protein_coding	zinc finger protein 687
known_NIR_12572	chr3	94919787;94921239	94921144;94922631	-	94919787	94922631	cassetteExon	ENSMUST00000147022.8	known	0.69	4.5	2	3;6	2	y	1.00	1.0	0	2;0	0	n	0.72	10.5	4	16;5	4	y	0.33	2.0	4	3;1	4	n	0.35	5.5	10	10;1	10	n	0.58	7.0	5	12;2	5	y	0.60	3.0	2	5;1	2	n	0.65	5.5	3	8;3	3	y	0.38	2.5	4	4;1	4	n	0.33	3.0	6	6;0	6	n	0.20	1.0	4	2;0	4	n	0.60	6.0	4	12;0	4	n	ENSMUSG00000019338.14	Zfp687	chr3	protein_coding	zinc finger protein 687
known_NIR_12573	chr3	94921239	94922422	-	94921239	94922631	A5SS	ENSMUST00000132195.8	known	0.00	0	6	0	6	n	-	-	-	-	-	-	0.58	7	5	7	5	y	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000019338.14	Zfp687	chr3	protein_coding	zinc finger protein 687
known_NIR_12574	chr3	94941075	94941220	-	94941075	94941229	A5SS	ENSMUST00000107237.8	known	0.49	169	177	169	177	y	0.49	190	198	190	198	y	0.45	189	227	189	227	y	0.51	192	183	192	183	y	0.43	209	280	209	280	y	0.47	107	120	107	120	y	0.47	254	282	254	282	y	0.47	84	94	84	94	y	0.48	167	184	167	184	y	0.49	253	259	253	259	y	0.52	233	211	233	211	y	0.47	195	217	195	217	y	ENSMUSG00000005625.16	Psmd4	chr3	protein_coding	proteasome (prosome, macropain) 26S subunit, non-ATPase, 4
known_NIR_12575	chr3	94943235	94943888	-	94943235	94943916	A5SS	ENSMUST00000107237.8	known	0.00	1	450	1	450	n	0.01	3	413	3	413	y	0.00	1	610	1	610	n	0.00	2	501	2	501	y	0.02	9	541	9	541	y	0.00	0	280	0	280	n	0.01	6	616	6	616	y	0.00	0	253	0	253	n	0.01	4	428	4	428	y	0.01	4	586	4	586	y	0.00	2	498	2	498	y	0.01	6	544	6	544	y	ENSMUSG00000005625.16	Psmd4	chr3	protein_coding	proteasome (prosome, macropain) 26S subunit, non-ATPase, 4
known_NIR_12576	chr3	94971095	94972732	-	94971095;94971785	94971642;94972732	ES	ENSMUST00000107236.9	known	0.00	0	18.5	0	16;21	n	0.00	0	11.5	0	13;10	n	0.00	0	26.0	0	17;35	n	0.00	0	18.0	0	18;18	n	0.09	2	21.5	2	17;26	y	0.00	0	12.5	0	8;17	n	0.00	0	25.0	0	24;26	n	0.00	0	9.5	0	6;13	n	0.00	0	11.5	0	10;13	n	0.00	0	26.5	0	22;31	n	0.00	0	18.5	0	17;20	n	0.00	0	27.0	0	19;35	n	ENSMUSG00000028126.17	Pip5k1a	chr3	protein_coding	phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha
known_NIR_12577	chr3	94990139	95013687	-	94990136	95013687	A3SS	ENSMUST00000107236.9	known	0.11	1	8	1	8	n	0.00	0	4	0	4	n	0.39	7	11	7	11	y	0.43	3	4	3	4	n	0.81	21	5	21	5	y	0.65	11	6	11	6	y	0.33	3	6	3	6	n	0.78	7	2	7	2	n	0.50	3	3	3	3	n	0.50	7	7	7	7	y	0.14	1	6	1	6	n	0.71	10	4	10	4	y	ENSMUSG00000028126.17	Pip5k1a	chr3	protein_coding	phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha
known_NIR_12578	chr3	95004629	95013687	-	94990136	95013687	A3SS	ENSMUST00000107236.9	known	0.43	6	8	6	8	y	0.20	1	4	1	4	n	0.15	2	11	2	11	y	0.60	6	4	6	4	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.40	4	6	4	6	y	0.50	2	2	2	2	n	0.50	3	3	3	3	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.20	1	4	1	4	n	ENSMUSG00000028126.17	Pip5k1a	chr3	protein_coding	phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha
known_NIR_12579	chr3	95022421	95025536	+	95018525	95025536	A5SS	ENSMUST00000009102.9	known	0.04	2	47	2	47	y	0.12	6	44	6	44	y	0.00	0	43	0	43	n	0.04	2	52	2	52	y	0.00	0	74	0	74	n	0.00	0	27	0	27	n	0.06	3	44	3	44	y	0.00	0	23	0	23	n	0.03	1	34	1	34	n	0.03	2	65	2	65	y	0.00	0	59	0	59	n	0.00	0	50	0	50	n	ENSMUSG00000008958.15	Vps72	chr3	protein_coding	vacuolar protein sorting 72
known_NIR_12580	chr3	95037194	95040136	-	95037194	95037475	5pMXE	ENSMUST00000174508.2	known	0.00	0	48	0	48	n	0.07	5	69	5	69	y	0.03	2	56	2	56	y	0.04	2	46	2	46	y	0.04	2	54	2	54	y	0.03	1	33	1	33	n	0.09	6	58	6	58	y	0.03	1	37	1	37	n	0.05	2	41	2	41	y	0.08	5	59	5	59	y	0.00	0	46	0	46	n	0.07	5	64	5	64	y	ENSMUSG00000092607.10	Scnm1	chr3	protein_coding	sodium channel modifier 1
known_NIR_12581	chr3	95037194	95040136	-	95037194;95037669	95037475;95040136	ES	ENSMUST00000172572.9	known	0.00	0	40.0	0	48;32	n	0.07	5	64.0	5	69;59	y	0.03	2	72.0	2	56;88	y	0.04	2	48.5	2	46;51	y	0.03	2	56.5	2	54;59	y	0.03	1	38.0	1	33;43	n	0.09	6	60.0	6	58;62	y	0.02	1	41.5	1	37;46	n	0.05	2	40.5	2	41;40	y	0.08	5	61.5	5	59;64	y	0.00	0	47.0	0	46;48	n	0.07	5	66.5	5	64;69	y	ENSMUSG00000092607.10	Scnm1	chr3	protein_coding	sodium channel modifier 1
known_NIR_12582	chr3	95037194	95040136	-	95037669	95040136	3pMXE	ENSMUST00000173527.2	known	0.00	0	32	0	32	n	0.08	5	59	5	59	y	0.02	2	88	2	88	y	0.04	2	51	2	51	y	0.03	2	59	2	59	y	0.02	1	43	1	43	n	0.09	6	62	6	62	y	0.02	1	46	1	46	n	0.05	2	40	2	40	y	0.07	5	64	5	64	y	0.00	0	48	0	48	n	0.07	5	69	5	69	y	ENSMUSG00000092607.10	Scnm1	chr3	protein_coding	sodium channel modifier 1
known_NIR_12583	chr3	95037273	95037475	-	95037194	95037475	A3SS	ENSMUST00000172572.9	known	0.04	2	48	2	48	y	0.00	0	69	0	69	n	0.00	0	56	0	56	n	0.00	0	46	0	46	n	0.00	0	54	0	54	n	0.00	0	33	0	33	n	0.00	0	58	0	58	n	0.00	0	37	0	37	n	0.00	0	41	0	41	n	0.00	0	59	0	59	n	0.02	1	46	1	46	n	0.00	0	64	0	64	n	ENSMUSG00000092607.10	Scnm1	chr3	protein_coding	sodium channel modifier 1
known_NIR_12584	chr3	95037669	95038487	-	95037669	95040136	A5SS	ENSMUST00000172572.9	known	0.03	1	32	1	32	n	0.02	1	59	1	59	n	0.07	7	88	7	88	y	0.02	1	51	1	51	n	0.05	3	59	3	59	y	0.02	1	43	1	43	n	0.05	3	62	3	62	y	0.00	0	46	0	46	n	0.00	0	40	0	40	n	0.02	1	64	1	64	n	0.13	7	48	7	48	y	0.01	1	69	1	69	n	ENSMUSG00000092607.10	Scnm1	chr3	protein_coding	sodium channel modifier 1
known_NIR_12585	chr3	95113913	95123525	-	95113913	95116151	5pMXE	ENSMUST00000098873.11	known	0.00	0	5	0	5	n	1.00	2	0	2	0	n	0.33	5	10	5	10	y	0.23	3	10	3	10	y	0.07	1	13	1	13	n	0.27	3	8	3	8	y	0.33	3	6	3	6	n	0.57	4	3	4	3	n	0.20	1	4	1	4	n	0.39	7	11	7	11	y	0.00	0	6	0	6	n	0.46	6	7	6	7	y	ENSMUSG00000038766.17	Gabpb2	chr3	protein_coding	GA repeat binding protein, beta 2
known_NIR_12586	chr3	95113913;95116247	95116151;95123525	-	95113913	95123525	cassetteExon	ENSMUST00000107209.8	known	1.00	6.5	0	5;8	0	n	0.00	0.0	2	0;0	2	n	0.55	6.0	5	10;2	5	y	0.77	10.0	3	10;10	3	y	0.91	10.5	1	13;8	1	n	0.68	6.5	3	8;5	3	y	0.62	5.0	3	6;4	3	y	0.47	3.5	4	3;4	4	y	0.71	2.5	1	4;1	1	n	0.53	8.0	7	11;5	7	y	1.00	5.0	0	6;4	0	n	0.48	5.5	6	7;4	6	y	ENSMUSG00000038766.17	Gabpb2	chr3	protein_coding	GA repeat binding protein, beta 2
known_NIR_12587	chr3	95188935	95189994	+	95188922	95189994	A5SS	ENSMUST00000152640.2	known	0.00	0	8	0	8	n	0.33	3	6	3	6	n	0.05	1	19	1	19	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	2	0	2	n	0.00	0	16	0	16	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.10	2	18	2	18	y	0.29	4	10	4	10	y	0.22	4	14	4	14	y	ENSMUSG00000038712.17	Mindy1	chr3	protein_coding	MINDY lysine 48 deubiquitinase 1
known_NIR_12588	chr3	95189242	95189994	+	95188922	95189994	A5SS	ENSMUST00000152640.2	known	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	19	0	19	n	0.00	0	7	0	7	n	0.18	3	14	3	14	y	0.00	0	2	0	2	n	0.00	0	16	0	16	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	18	0	18	n	0.09	1	10	1	10	n	0.00	0	14	0	14	n	ENSMUSG00000038712.17	Mindy1	chr3	protein_coding	MINDY lysine 48 deubiquitinase 1
known_NIR_12589	chr3	95190055	95190231	+	95190055	95190542	A3SS	ENSMUST00000135249.8	known	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.08	1	11	1	11	n	0.00	0	6	0	6	n	0.29	5	12	5	12	y	0.67	2	1	2	1	n	0.00	0	10	0	10	n	0.25	3	9	3	9	y	0.00	0	7	0	7	n	0.05	1	19	1	19	n	0.22	2	7	2	7	n	0.00	0	10	0	10	n	ENSMUSG00000038712.17	Mindy1	chr3	protein_coding	MINDY lysine 48 deubiquitinase 1
known_NIR_12590	chr3	95190936;95194183	95194007;95194956	+	95190936	95194956	cassetteExon	ENSMUST00000135249.8	known	0.02	3.0	131	3;3	131	y	0.03	3.0	107	1;5	107	n	0.02	3.5	167	4;3	167	y	0.04	6.5	139	8;5	139	y	0.02	3.5	188	2;5	188	y	0.03	3.0	95	3;3	95	y	0.02	3.0	161	2;4	161	y	0.04	4.0	110	6;2	110	y	0.04	4.5	113	3;6	113	y	0.06	12.0	191	8;16	191	y	0.04	5.5	149	5;6	149	y	0.02	2.5	144	3;2	144	y	ENSMUSG00000038712.17	Mindy1	chr3	protein_coding	MINDY lysine 48 deubiquitinase 1
known_NIR_12591	chr3	95193595	95194956	+	95190936	95194956	A5SS	ENSMUST00000135249.8	known	0.01	1	131	1	131	n	0.00	0	107	0	107	n	0.00	0	167	0	167	n	0.00	0	139	0	139	n	0.00	0	188	0	188	n	0.00	0	95	0	95	n	0.00	0	161	0	161	n	0.00	0	110	0	110	n	0.02	2	113	2	113	y	0.00	0	191	0	191	n	0.00	0	149	0	149	n	0.00	0	144	0	144	n	ENSMUSG00000038712.17	Mindy1	chr3	protein_coding	MINDY lysine 48 deubiquitinase 1
known_NIR_12592	chr3	95202297	95202584	+	95202297	95202611	A3SS	ENSMUST00000039537.14	known	0.87	192	28	192	28	y	0.78	166	46	166	46	y	0.81	218	52	218	52	y	0.82	190	41	190	41	y	0.81	276	66	276	66	y	0.83	126	25	126	25	y	0.81	241	57	241	57	y	0.84	129	24	129	24	y	0.82	181	39	181	39	y	0.82	253	56	253	56	y	0.80	244	60	244	60	y	0.85	222	40	222	40	y	ENSMUSG00000038712.17	Mindy1	chr3	protein_coding	MINDY lysine 48 deubiquitinase 1
known_NIR_12593	chr3	95222656	95227373	+	95222213	95227373	A5SS	ENSMUST00000129267.8	known	1.00	256	0	256	0	n	1.00	186	0	186	0	n	1.00	411	0	411	0	n	1.00	310	1	310	1	n	1.00	406	2	406	2	y	1.00	227	1	227	1	n	1.00	353	0	353	0	n	1.00	229	0	229	0	n	1.00	241	0	241	0	n	1.00	365	0	365	0	n	1.00	277	0	277	0	n	1.00	314	0	314	0	n	ENSMUSG00000015714.12	Cers2	chr3	protein_coding	ceramide synthase 2
known_NIR_12594	chr3	95226264	95227373	+	95222213	95227373	A5SS	ENSMUST00000129267.8	known	1.00	188	0	188	0	n	1.00	120	0	120	0	n	1.00	106	0	106	0	n	1.00	245	1	245	1	n	0.99	215	2	215	2	y	0.98	55	1	55	1	n	1.00	166	0	166	0	n	1.00	84	0	84	0	n	1.00	213	0	213	0	n	1.00	268	0	268	0	n	1.00	238	0	238	0	n	1.00	236	0	236	0	n	ENSMUSG00000015714.12	Cers2	chr3	protein_coding	ceramide synthase 2
known_NIR_12595	chr3	95226264	95227373	+	95222656	95227373	A5SS	ENSMUST00000015858.12	known	0.42	188	256	188	256	y	0.39	120	186	120	186	y	0.21	106	411	106	411	y	0.44	245	310	245	310	y	0.35	215	406	215	406	y	0.20	55	227	55	227	y	0.32	166	353	166	353	y	0.27	84	229	84	229	y	0.47	213	241	213	241	y	0.42	268	365	268	365	y	0.46	238	277	238	277	y	0.43	236	314	236	314	y	ENSMUSG00000015714.12	Cers2	chr3	protein_coding	ceramide synthase 2
known_NIR_12596	chr3	95247376	95247473	-	95247373	95247473	A3SS	ENSMUST00000124638.8	known	0.80	16	4	16	4	y	0.77	10	3	10	3	y	0.91	20	2	20	2	y	0.83	24	5	24	5	y	0.77	24	7	24	7	y	0.94	16	1	16	1	n	0.90	26	3	26	3	y	0.77	10	3	10	3	y	1.00	25	0	25	0	n	0.97	33	1	33	1	n	0.94	15	1	15	1	n	0.90	36	4	36	4	y	ENSMUSG00000015697.15	Setdb1	chr3	protein_coding	SET domain, bifurcated 1
known_NIR_12597	chr3	95367732	95377488	+	95367732;95374148	95374104;95377488	ES	ENSMUST00000147765.8	known	0.26	6	17.5	6	18;17	y	0.40	5	7.5	5	6;9	y	0.19	8	34.0	8	36;32	y	0.26	11	31.5	11	28;35	y	0.33	12	24.0	12	28;20	y	0.35	8	15.0	8	15;15	y	0.18	8	36.0	8	34;38	y	0.61	14	9.0	14	11;7	y	0.45	10	12.0	10	13;11	y	0.44	16	20.0	16	17;23	y	0.37	10	17.0	10	16;18	y	0.31	18	40.5	18	39;42	y	ENSMUSG00000015522.19	Arnt	chr3	protein_coding	aryl hydrocarbon receptor nuclear translocator
known_NIR_12598	chr3	95367732	95377488	+	95374148	95377488	5pMXE	ENSMUST00000156653.8	known	0.26	6	17	6	17	y	0.36	5	9	5	9	y	0.20	8	32	8	32	y	0.24	11	35	11	35	y	0.38	12	20	12	20	y	0.35	8	15	8	15	y	0.17	8	38	8	38	y	0.67	14	7	14	7	y	0.48	10	11	10	11	y	0.41	16	23	16	23	y	0.36	10	18	10	18	y	0.30	18	42	18	42	y	ENSMUSG00000015522.19	Arnt	chr3	protein_coding	aryl hydrocarbon receptor nuclear translocator
known_NIR_12599	chr3	95398481	95401012	+	95398481	95401009	A3SS	ENSMUST00000102749.11	known	0.16	5	27	5	27	y	0.17	4	20	4	20	y	0.17	10	50	10	50	y	0.15	8	46	8	46	y	0.25	14	41	14	41	y	0.17	4	20	4	20	y	0.20	12	48	12	48	y	0.15	5	29	5	29	y	0.15	7	41	7	41	y	0.34	21	41	21	41	y	0.16	7	37	7	37	y	0.14	7	42	7	42	y	ENSMUSG00000015522.19	Arnt	chr3	protein_coding	aryl hydrocarbon receptor nuclear translocator
known_NIR_12600	chr3	95434236	95436748	+	95434236	95436745	A3SS	ENSMUST00000015667.9	known	0.90	76	8	76	8	y	0.93	54	4	54	4	y	0.92	76	7	76	7	y	0.92	46	4	46	4	y	0.98	103	2	103	2	y	0.87	34	5	34	5	y	0.90	63	7	63	7	y	0.93	38	3	38	3	y	0.93	38	3	38	3	y	0.93	42	3	42	3	y	0.89	49	6	49	6	y	0.97	30	1	30	1	n	ENSMUSG00000038642.11	Ctss	chr3	protein_coding	cathepsin S
known_NIR_12601	chr3	95515348	95524355	+	95515348;95517097	95516983;95524355	ES	ENSMUST00000177390.8	known	0.06	1	14.5	1	16;13	n	0.00	0	12.5	0	10;15	n	0.06	2	32.0	2	34;30	y	0.00	0	20.5	0	17;24	n	0.00	0	21.0	0	21;21	n	0.00	0	22.5	0	19;26	n	0.00	0	17.0	0	15;19	n	0.00	0	14.0	0	9;19	n	0.00	0	15.5	0	16;15	n	0.23	4	13.5	4	9;18	y	0.00	0	16.5	0	19;14	n	0.07	1	14.0	1	13;15	n	ENSMUSG00000046519.16	Golph3l	chr3	protein_coding	golgi phosphoprotein 3-like
known_NIR_12602	chr3	95644366	95644945	-	95644369	95644945	A3SS	ENSMUST00000117507.10	known	0.24	10	31	10	31	y	0.28	12	31	12	31	y	0.36	42	75	42	75	y	0.26	12	34	12	34	y	0.28	21	54	21	54	y	0.17	6	30	6	30	y	0.32	19	41	19	41	y	0.27	10	27	10	27	y	0.30	10	23	10	23	y	0.35	17	32	17	32	y	0.35	23	43	23	43	y	0.30	18	43	18	43	y	ENSMUSG00000028108.17	Ecm1	chr3	protein_coding	extracellular matrix protein 1
known_NIR_12603	chr3	95645179	95645324	-	95645200	95645324	A3SS	ENSMUST00000117507.10	known	0.00	0	43	0	43	n	0.00	0	53	0	53	n	0.02	3	164	3	164	y	0.00	0	67	0	67	n	0.01	1	85	1	85	n	0.03	2	70	2	70	y	0.01	1	104	1	104	n	0.00	0	36	0	36	n	0.00	0	35	0	35	n	0.04	3	69	3	69	y	0.00	0	82	0	82	n	0.02	2	79	2	79	y	ENSMUSG00000028108.17	Ecm1	chr3	protein_coding	extracellular matrix protein 1
known_NIR_12604	chr3	95645254	95645324	-	95645200	95645324	A3SS	ENSMUST00000117507.10	known	0.09	4	43	4	43	y	0.04	2	53	2	53	y	0.03	5	164	5	164	y	0.01	1	67	1	67	n	0.01	1	85	1	85	n	0.04	3	70	3	70	y	0.03	3	104	3	104	y	0.00	0	36	0	36	n	0.00	0	35	0	35	n	0.08	6	69	6	69	y	0.02	2	82	2	82	y	0.04	3	79	3	79	y	ENSMUSG00000028108.17	Ecm1	chr3	protein_coding	extracellular matrix protein 1
known_NIR_12605	chr3	95645254	95645551	-	95645425	95645551	A3SS&ES	ENSMUST00000128885.8	known	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.04	2	44	2	44	y	0.00	0	18	0	18	n	0.04	1	27	1	27	n	0.00	0	18	0	18	n	0.00	0	26	0	26	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	17	0	17	n	0.00	0	14	0	14	n	0.00	0	21	0	21	n	ENSMUSG00000028108.17	Ecm1	chr3	protein_coding	extracellular matrix protein 1
known_NIR_12606	chr3	95645254	95645551	-	95645428	95645551	A3SS&ES	ENSMUST00000117507.10	known	0.00	0	41	0	41	n	0.00	0	44	0	44	n	0.01	2	135	2	135	y	0.00	0	55	0	55	n	0.02	1	59	1	59	n	0.00	0	49	0	49	n	0.00	0	66	0	66	n	0.00	0	40	0	40	n	0.00	0	24	0	24	n	0.00	0	49	0	49	n	0.00	0	69	0	69	n	0.00	0	67	0	67	n	ENSMUSG00000028108.17	Ecm1	chr3	protein_coding	extracellular matrix protein 1
known_NIR_12607	chr3	95645254;95645425	95645324;95645551	-	95645254	95645551	cassetteExon	ENSMUST00000123143.8	known	1.00	5.5	0	4;7	0	n	1.00	8.5	0	2;15	0	n	0.92	24.5	2	5;44	2	y	1.00	9.5	0	1;18	0	n	0.93	14.0	1	1;27	1	n	1.00	10.5	0	3;18	0	n	1.00	14.5	0	3;26	0	n	1.00	5.5	0	0;11	0	n	1.00	2.0	0	0;4	0	n	1.00	11.5	0	6;17	0	n	1.00	8.0	0	2;14	0	n	1.00	12.0	0	3;21	0	n	ENSMUSG00000028108.17	Ecm1	chr3	protein_coding	extracellular matrix protein 1
known_NIR_12608	chr3	95645254;95645428	95645324;95645551	-	95645254	95645551	cassetteExon	ENSMUST00000123143.8	known	1.00	22.5	0	4;41	0	n	1.00	23.0	0	2;44	0	n	0.97	70.0	2	5;135	2	y	1.00	28.0	0	1;55	0	n	0.97	30.0	1	1;59	1	n	1.00	26.0	0	3;49	0	n	1.00	34.5	0	3;66	0	n	1.00	20.0	0	0;40	0	n	1.00	12.0	0	0;24	0	n	1.00	27.5	0	6;49	0	n	1.00	35.5	0	2;69	0	n	1.00	35.0	0	3;67	0	n	ENSMUSG00000028108.17	Ecm1	chr3	protein_coding	extracellular matrix protein 1
known_NIR_12609	chr3	95645425	95645551	-	95645428	95645551	A3SS	ENSMUST00000117507.10	known	0.15	7	41	7	41	y	0.25	15	44	15	44	y	0.25	44	135	44	135	y	0.25	18	55	18	55	y	0.31	27	59	27	59	y	0.27	18	49	18	49	y	0.28	26	66	26	66	y	0.22	11	40	11	40	y	0.14	4	24	4	24	y	0.26	17	49	17	49	y	0.17	14	69	14	69	y	0.24	21	67	21	67	y	ENSMUSG00000028108.17	Ecm1	chr3	protein_coding	extracellular matrix protein 1
known_NIR_12610	chr3	95654968	95655354	-	95653482	95655354	A3SS	ENSMUST00000196077.5	known	1.00	53	0	53	0	n	0.96	44	2	44	2	y	0.93	54	4	54	4	y	1.00	77	0	77	0	n	1.00	52	0	52	0	n	1.00	33	0	33	0	n	0.98	59	1	59	1	n	1.00	28	0	28	0	n	1.00	50	0	50	0	n	0.99	87	1	87	1	n	0.98	44	1	44	1	n	1.00	58	0	58	0	n	ENSMUSG00000028107.15	Tars2	chr3	protein_coding	threonyl-tRNA synthetase 2, mitochondrial (putative)
known_NIR_12611	chr3	95655452	95657651	-	95655452	95655799	A5SS	ENSMUST00000199869.5	known	0.12	6	46	6	46	y	0.20	7	28	7	28	y	0.09	4	40	4	40	y	0.06	3	46	3	46	y	0.18	9	41	9	41	y	0.00	0	29	0	29	n	0.06	3	46	3	46	y	0.00	0	24	0	24	n	0.11	5	42	5	42	y	0.09	5	52	5	52	y	0.14	8	49	8	49	y	0.18	11	50	11	50	y	ENSMUSG00000028107.15	Tars2	chr3	protein_coding	threonyl-tRNA synthetase 2, mitochondrial (putative)
known_NIR_12612	chr3	95655452	95657651	-	95655452;95655945	95655799;95657651	ES	ENSMUST00000199464.5	known	0.12	6	43.0	6	46;40	y	0.19	7	30.5	7	28;33	y	0.09	4	40.5	4	40;41	y	0.06	3	46.0	3	46;46	y	0.15	9	51.0	9	41;61	y	0.00	0	30.0	0	29;31	n	0.06	3	48.0	3	46;50	y	0.00	0	31.0	0	24;38	n	0.11	5	40.5	5	42;39	y	0.09	5	52.5	5	52;53	y	0.14	8	49.5	8	49;50	y	0.20	11	44.0	11	50;38	y	ENSMUSG00000028107.15	Tars2	chr3	protein_coding	threonyl-tRNA synthetase 2, mitochondrial (putative)
known_NIR_12613	chr3	95655452	95657651	-	95655945	95657651	3pMXE	ENSMUST00000199570.2	known	0.13	6	40	6	40	y	0.17	7	33	7	33	y	0.09	4	41	4	41	y	0.06	3	46	3	46	y	0.13	9	61	9	61	y	0.00	0	31	0	31	n	0.06	3	50	3	50	y	0.00	0	38	0	38	n	0.11	5	39	5	39	y	0.09	5	53	5	53	y	0.14	8	50	8	50	y	0.22	11	38	11	38	y	ENSMUSG00000028107.15	Tars2	chr3	protein_coding	threonyl-tRNA synthetase 2, mitochondrial (putative)
known_NIR_12614	chr3	95658077	95658150	-	95658077	95658179	A5SS	ENSMUST00000196077.5	known	0.06	2	34	2	34	y	0.04	1	24	1	24	n	0.05	2	37	2	37	y	0.14	6	37	6	37	y	0.00	0	45	0	45	n	0.00	0	19	0	19	n	0.09	4	42	4	42	y	0.08	2	22	2	22	y	0.06	2	32	2	32	y	0.02	1	42	1	42	n	0.13	4	27	4	27	y	0.07	3	39	3	39	y	ENSMUSG00000028107.15	Tars2	chr3	protein_coding	threonyl-tRNA synthetase 2, mitochondrial (putative)
known_NIR_12615	chr3	95658296	95660319	-	95658296;95658942	95658818;95660319	ES	ENSMUST00000196077.5	known	0.07	3	39.0	3	28;50	y	0.00	0	25.5	0	24;27	n	0.00	0	39.0	0	29;49	n	0.00	0	47.5	0	44;51	n	0.06	3	51.5	3	40;63	y	0.00	0	26.5	0	16;37	n	0.00	0	43.0	0	46;40	n	0.00	0	26.5	0	20;33	n	0.00	0	39.5	0	35;44	n	0.00	0	52.0	0	35;69	n	0.00	0	46.5	0	35;58	n	0.00	0	54.0	0	43;65	n	ENSMUSG00000028107.15	Tars2	chr3	protein_coding	threonyl-tRNA synthetase 2, mitochondrial (putative)
known_NIR_12616	chr3	95658296	95660319	-	95658942	95660319	A3SS&ES	ENSMUST00000196475.5	known	0.06	3	50	3	50	y	0.00	0	27	0	27	n	0.00	0	49	0	49	n	0.00	0	51	0	51	n	0.05	3	63	3	63	y	0.00	0	37	0	37	n	0.00	0	40	0	40	n	0.00	0	33	0	33	n	0.00	0	44	0	44	n	0.00	0	69	0	69	n	0.00	0	58	0	58	n	0.00	0	65	0	65	n	ENSMUSG00000028107.15	Tars2	chr3	protein_coding	threonyl-tRNA synthetase 2, mitochondrial (putative)
known_NIR_12617	chr3	95658942	95660319	-	95658077	95660319	A3SS	ENSMUST00000163530.8	known	0.98	50	1	50	1	n	1.00	27	0	27	0	n	0.96	49	2	49	2	y	0.93	51	4	51	4	y	1.00	63	0	63	0	n	1.00	37	0	37	0	n	0.98	40	1	40	1	n	1.00	33	0	33	0	n	0.98	44	1	44	1	n	0.97	69	2	69	2	y	0.92	58	5	58	5	y	1.00	65	0	65	0	n	ENSMUSG00000028107.15	Tars2	chr3	protein_coding	threonyl-tRNA synthetase 2, mitochondrial (putative)
known_NIR_12618	chr3	95660442	95661684	-	95660442	95661631	A5SS	ENSMUST00000196077.5	known	0.00	0	60	0	60	n	0.00	0	44	0	44	n	0.04	2	43	2	43	y	0.00	0	50	0	50	n	0.06	4	63	4	63	y	0.03	1	32	1	32	n	0.08	4	48	4	48	y	0.00	0	34	0	34	n	0.00	0	53	0	53	n	0.00	0	65	0	65	n	0.00	0	42	0	42	n	0.06	4	59	4	59	y	ENSMUSG00000028107.15	Tars2	chr3	protein_coding	threonyl-tRNA synthetase 2, mitochondrial (putative)
known_NIR_12619	chr3	95660442	95662070	-	95660442	95661631	5pMXE	ENSMUST00000198007.5	known	0.02	1	60	1	60	n	0.00	0	44	0	44	n	0.07	3	43	3	43	y	0.00	0	50	0	50	n	0.00	0	63	0	63	n	0.06	2	32	2	32	y	0.02	1	48	1	48	n	0.00	0	34	0	34	n	0.00	0	53	0	53	n	0.00	0	65	0	65	n	0.00	0	42	0	42	n	0.00	0	59	0	59	n	ENSMUSG00000028107.15	Tars2	chr3	protein_coding	threonyl-tRNA synthetase 2, mitochondrial (putative)
known_NIR_12620	chr3	95660442	95662070	-	95660442;95661827	95661631;95662070	ES	ENSMUST00000196077.5	known	0.02	1	47.5	1	60;35	n	0.00	0	39.0	0	44;34	n	0.06	3	46.0	3	43;49	y	0.00	0	54.0	0	50;58	n	0.00	0	60.0	0	63;57	n	0.07	2	28.0	2	32;24	y	0.02	1	48.0	1	48;48	n	0.00	0	32.5	0	34;31	n	0.00	0	43.0	0	53;33	n	0.00	0	57.0	0	65;49	n	0.00	0	35.5	0	42;29	n	0.00	0	54.0	0	59;49	n	ENSMUSG00000028107.15	Tars2	chr3	protein_coding	threonyl-tRNA synthetase 2, mitochondrial (putative)
known_NIR_12621	chr3	95660442;95661827	95661684;95662070	-	95660442	95662070	cassetteExon	ENSMUST00000195929.5	known	0.95	17.5	1	0;35	1	n	1.00	17.0	0	0;34	0	n	0.89	25.5	3	2;49	3	y	1.00	29.0	0	0;58	0	n	1.00	30.5	0	4;57	0	n	0.86	12.5	2	1;24	2	n	0.96	26.0	1	4;48	1	n	1.00	15.5	0	0;31	0	n	1.00	16.5	0	0;33	0	n	1.00	24.5	0	0;49	0	n	1.00	14.5	0	0;29	0	n	1.00	26.5	0	4;49	0	n	ENSMUSG00000028107.15	Tars2	chr3	protein_coding	threonyl-tRNA synthetase 2, mitochondrial (putative)
known_NIR_12622	chr3	95680465	95681424	-	95679508	95681424	A3SS	ENSMUST00000200164.5	known	0.11	1	8	1	8	n	0.25	1	3	1	3	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.11	2	16	2	16	y	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	ENSMUSG00000028106.14	Rprd2	chr3	protein_coding	regulation of nuclear pre-mRNA domain containing 2
known_NIR_12623	chr3	95692418;95693709	95693632;95694596	-	95692418	95694596	cassetteExon	ENSMUST00000200164.5	known	0.89	15.5	2	13;18	2	y	1.00	8.5	0	10;7	0	n	0.68	19.0	9	24;14	9	y	0.72	15.5	6	19;12	6	y	0.66	23.0	12	25;21	12	y	0.73	11.0	4	15;7	4	y	1.00	16.0	0	18;14	0	n	0.67	14.5	7	13;16	7	y	0.59	8.5	6	8;9	6	y	0.84	16.0	3	17;15	3	y	0.62	13.0	8	10;16	8	y	0.65	18.5	10	24;13	10	y	ENSMUSG00000028106.14	Rprd2	chr3	protein_coding	regulation of nuclear pre-mRNA domain containing 2
known_NIR_12624	chr3	95692418;95693763	95693632;95694596	-	95692418	95694596	cassetteExon	ENSMUST00000200164.5	known	0.76	6.5	2	13;0	2	n	1.00	5.0	0	10;0	0	n	0.57	12.0	9	24;0	9	n	0.64	10.5	6	19;2	6	y	0.51	12.5	12	25;0	12	n	0.65	7.5	4	15;0	4	n	1.00	9.0	0	18;0	0	n	0.48	6.5	7	13;0	7	n	0.40	4.0	6	8;0	6	n	0.74	8.5	3	17;0	3	n	0.38	5.0	8	10;0	8	n	0.55	12.0	10	24;0	10	n	ENSMUSG00000028106.14	Rprd2	chr3	protein_coding	regulation of nuclear pre-mRNA domain containing 2
known_NIR_12625	chr3	95693709	95694596	-	95693763	95694596	A3SS	ENSMUST00000090791.8	known	1.00	18	0	18	0	n	1.00	7	0	7	0	n	1.00	14	0	14	0	n	0.86	12	2	12	2	y	1.00	21	0	21	0	n	1.00	7	0	7	0	n	1.00	14	0	14	0	n	1.00	16	0	16	0	n	1.00	9	0	9	0	n	1.00	15	0	15	0	n	1.00	16	0	16	0	n	1.00	13	0	13	0	n	ENSMUSG00000028106.14	Rprd2	chr3	protein_coding	regulation of nuclear pre-mRNA domain containing 2
known_NIR_12626	chr3	95739934;95741514	95741065;95742666	-	95739934	95742666	cassetteExon	ENSMUST00000159901.8	known	1.00	23.5	0	24;23	0	n	1.00	34.0	0	39;29	0	n	1.00	29.0	0	34;24	0	n	1.00	33.5	0	39;28	0	n	1.00	35.5	0	29;42	0	n	1.00	16.0	0	15;17	0	n	1.00	34.0	0	33;35	0	n	1.00	13.0	0	16;10	0	n	1.00	20.0	0	26;14	0	n	0.91	32.0	3	37;27	3	y	1.00	22.5	0	22;23	0	n	1.00	29.5	0	29;30	0	n	ENSMUSG00000015748.14	Prpf3	chr3	protein_coding	pre-mRNA processing factor 3
known_NIR_12627	chr3	95742837	95742956	-	95742779	95742956	A3SS	ENSMUST00000015892.14	known	0.00	0	41	0	41	n	0.04	1	25	1	25	n	0.00	0	34	0	34	n	0.00	0	25	0	25	n	0.04	1	27	1	27	n	0.00	0	6	0	6	n	0.00	0	26	0	26	n	0.21	3	11	3	11	y	0.00	0	20	0	20	n	0.00	0	24	0	24	n	0.00	0	19	0	19	n	0.00	0	25	0	25	n	ENSMUSG00000015748.14	Prpf3	chr3	protein_coding	pre-mRNA processing factor 3
known_NIR_12628	chr3	95748056	95751498	-	95748061	95751498	A3SS	ENSMUST00000015892.14	known	0.04	1	25	1	25	n	0.00	0	15	0	15	n	0.00	0	25	0	25	n	0.00	0	20	0	20	n	0.07	3	38	3	38	y	0.00	0	8	0	8	n	0.09	2	20	2	20	y	0.00	0	22	0	22	n	0.00	0	11	0	11	n	0.08	2	22	2	22	y	0.06	1	15	1	15	n	0.00	0	24	0	24	n	ENSMUSG00000015748.14	Prpf3	chr3	protein_coding	pre-mRNA processing factor 3
known_NIR_12629	chr3	95756373	95758875	-	95757102	95758875	3pMXE	ENSMUST00000161073.2	known	0.75	12	4	12	4	y	0.70	7	3	7	3	y	0.70	7	3	7	3	y	0.94	15	1	15	1	n	0.71	15	6	15	6	y	0.80	4	1	4	1	n	0.85	11	2	11	2	y	1.00	9	0	9	0	n	1.00	8	0	8	0	n	0.85	11	2	11	2	y	0.73	8	3	8	3	y	1.00	15	0	15	0	n	ENSMUSG00000015748.14	Prpf3	chr3	protein_coding	pre-mRNA processing factor 3
known_NIR_12630	chr3	95756373;95757102	95757007;95758875	-	95756373	95758875	cassetteExon	ENSMUST00000015892.14	known	0.25	4.0	12	4;4	12	y	0.22	2.0	7	1;3	7	n	0.44	5.5	7	8;3	7	y	0.06	1.0	15	1;1	15	n	0.29	6.0	15	6;6	15	y	0.38	2.5	4	4;1	4	n	0.08	1.0	11	0;2	11	n	0.10	1.0	9	2;0	9	n	0.00	0.0	8	0;0	8	n	0.12	1.5	11	1;2	11	n	0.30	3.5	8	4;3	8	y	0.03	0.5	15	1;0	15	n	ENSMUSG00000015748.14	Prpf3	chr3	protein_coding	pre-mRNA processing factor 3
known_NIR_12631	chr3	95770244	95770442	-	95770244	95777806	A5SS	ENSMUST00000067298.5	known	0.00	0	511	0	511	n	0.00	0	542	0	542	n	0.00	0	423	0	423	n	0.00	2	432	2	432	y	0.00	0	571	0	571	n	0.00	0	230	0	230	n	0.00	1	612	1	612	n	0.00	1	287	1	287	n	0.00	2	404	2	404	y	0.00	0	609	0	609	n	0.00	1	525	1	525	n	0.00	0	611	0	611	n	ENSMUSG00000054312.7	Mrps21	chr3	protein_coding	mitochondrial ribosomal protein S21
known_NIR_12632	chr3	95787097	95787721	-	95786461	95787721	A3SS	ENSMUST00000159739.8	known	0.08	5	54	5	54	y	0.02	2	93	2	93	y	0.00	0	5	0	5	n	0.00	0	51	0	51	n	0.00	0	19	0	19	n	0.00	0	8	0	8	n	0.00	0	38	0	38	n	0.00	0	5	0	5	n	0.00	0	24	0	24	n	0.00	0	37	0	37	n	0.00	0	33	0	33	n	0.14	3	19	3	19	y	ENSMUSG00000038550.11	Ciart	chr3	protein_coding	circadian associated repressor of transcription
known_NIR_12633	chr3	95788370	95789467	-	95788370	95788493	A5SS	ENSMUST00000159739.8	known	0.00	0	83	0	83	n	0.00	0	73	0	73	n	0.00	0	14	0	14	n	0.00	0	47	0	47	n	0.00	0	22	0	22	n	0.00	0	2	0	2	n	0.00	0	33	0	33	n	0.00	0	8	0	8	n	0.04	1	25	1	25	n	0.05	2	40	2	40	y	0.00	0	24	0	24	n	0.00	0	34	0	34	n	ENSMUSG00000038550.11	Ciart	chr3	protein_coding	circadian associated repressor of transcription
known_NIR_12634	chr3	95788370	95789467	-	95788370;95788901	95788493;95789467	ES	ENSMUST00000036418.10	known	0.00	0	53.5	0	83;24	n	0.00	0	47.0	0	73;21	n	0.00	0	8.5	0	14;3	n	0.00	0	32.5	0	47;18	n	0.00	0	12.5	0	22;3	n	0.00	0	1.0	0	2;0	n	0.00	0	21.5	0	33;10	n	0.00	0	4.0	0	8;0	n	0.06	1	16.5	1	25;8	n	0.07	2	26.0	2	40;12	y	0.00	0	18.5	0	24;13	n	0.00	0	22.5	0	34;11	n	ENSMUSG00000038550.11	Ciart	chr3	protein_coding	circadian associated repressor of transcription
known_NIR_12635	chr3	95788591	95789467	-	95788901	95789467	A3SS	ENSMUST00000036418.10	known	0.00	0	24	0	24	n	0.09	2	21	2	21	y	0.00	0	3	0	3	n	0.00	0	18	0	18	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.11	1	8	1	8	n	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	ENSMUSG00000038550.11	Ciart	chr3	protein_coding	circadian associated repressor of transcription
known_NIR_12636	chr3	95788901	95789267	-	95788901	95789467	A5SS	ENSMUST00000036418.10	known	0.33	12	24	12	24	y	0.25	7	21	7	21	y	0.00	0	3	0	3	n	0.36	10	18	10	18	y	0.40	2	3	2	3	n	-	-	-	-	-	-	0.33	5	10	5	10	y	-	-	-	-	-	-	0.20	2	8	2	8	y	0.25	4	12	4	12	y	0.35	7	13	7	13	y	0.00	0	11	0	11	n	ENSMUSG00000038550.11	Ciart	chr3	protein_coding	circadian associated repressor of transcription
known_NIR_12637	chr3	95801595	95802269	+	95801595	95802133	A3SS	ENSMUST00000015894.12	known	0.00	0	195	0	195	n	0.01	1	144	1	144	n	0.00	0	184	0	184	n	0.03	7	224	7	224	y	0.01	2	324	2	324	y	0.00	0	128	0	128	n	0.01	4	312	4	312	y	0.01	1	171	1	171	n	0.00	0	197	0	197	n	0.00	0	283	0	283	n	0.00	0	202	0	202	n	0.00	0	223	0	223	n	ENSMUSG00000015750.16	Aph1a	chr3	protein_coding	aph1 homolog A, gamma secretase subunit
known_NIR_12638	chr3	95808584;95808792	95808771;95809423	-	95808584	95809423	cassetteExon	ENSMUST00000036181.15	known	0.01	0.5	43	1;0	43	n	0.20	3.0	12	3;3	12	y	0.00	0.0	5	0;0	5	n	0.00	0.0	65	0;0	65	n	0.00	0.0	90	0;0	90	n	0.00	0.0	16	0;0	16	n	0.01	1.0	76	1;1	76	n	0.00	0.0	25	0;0	25	n	0.04	2.0	55	2;2	55	y	0.02	2.0	79	2;2	79	y	0.04	3.0	65	4;2	65	y	0.00	0.0	85	0;0	85	n	ENSMUSG00000038526.15	Car14	chr3	protein_coding	carbonic anhydrase 14
known_NIR_12639	chr3	95837931	95841221	+	95836962	95841221	A5SS	ENSMUST00000165307.8	known	0.00	0	41	0	41	n	0.00	0	23	0	23	n	0.00	0	57	0	57	n	0.00	0	51	0	51	n	0.00	0	47	0	47	n	0.00	0	25	0	25	n	0.00	0	62	0	62	n	0.02	1	54	1	54	n	0.00	0	21	0	21	n	0.00	0	39	0	39	n	0.00	0	39	0	39	n	0.05	2	42	2	42	y	ENSMUSG00000015749.13	Anp32e	chr3	protein_coding	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E
known_NIR_12640	chr3	95845315	95851619	+	95845351	95851619	A5SS	ENSMUST00000165307.8	known	0.00	0	47	0	47	n	0.04	2	50	2	50	y	0.14	8	51	8	51	y	0.05	2	42	2	42	y	0.00	0	50	0	50	n	0.03	1	35	1	35	n	0.19	10	42	10	42	y	0.17	5	24	5	24	y	0.00	0	32	0	32	n	0.07	3	38	3	38	y	0.03	1	33	1	33	n	0.05	2	35	2	35	y	ENSMUSG00000015749.13	Anp32e	chr3	protein_coding	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E
known_NIR_12641	chr3	96011940	96037542	+	96012131	96037542	A5SS	ENSMUST00000132980.8	known	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.18	2	9	2	9	y	0.00	0	1	0	1	n	0.22	2	7	2	7	n	0.00	0	6	0	6	n	0.67	2	1	2	1	n	0.12	1	7	1	7	n	0.25	3	9	3	9	y	0.20	2	8	2	8	y	ENSMUSG00000038495.15	Otud7b	chr3	protein_coding	OTU domain containing 7B
known_NIR_12642	chr3	96012131	96043785	+	96012131;96037654	96037542;96043785	ES	ENSMUST00000132980.8	known	0.36	2	3.5	2	2;5	n	0.38	3	5.0	3	6;4	y	0.61	7	4.5	7	5;4	y	0.70	7	3.0	7	4;2	y	0.48	8	8.5	8	9;8	y	0.57	2	1.5	2	1;2	n	0.61	7	4.5	7	7;2	y	0.72	14	5.5	14	6;5	y	0.80	4	1.0	4	1;1	n	0.56	10	8.0	10	7;9	y	0.38	5	8.0	5	9;7	y	0.55	9	7.5	9	8;7	y	ENSMUSG00000038495.15	Otud7b	chr3	protein_coding	OTU domain containing 7B
known_NIR_12643	chr3	96012131;96016080	96016023;96043785	+	96012131	96043785	cassetteExon	ENSMUST00000138206.8	known	0.00	0.0	2	0;0	2	n	0.00	0.0	3	0;0	3	n	0.18	1.5	7	1;2	7	n	0.18	1.5	7	1;2	7	n	0.00	0.0	8	0;0	8	n	0.00	0.0	2	0;0	2	n	0.42	5.0	7	3;7	7	y	0.07	1.0	14	2;0	14	n	0.00	0.0	4	0;0	4	n	0.26	3.5	10	3;4	10	y	0.00	0.0	5	0;0	5	n	0.00	0.0	9	0;0	9	n	ENSMUSG00000038495.15	Otud7b	chr3	protein_coding	OTU domain containing 7B
known_NIR_12644	chr3	96012131;96016080	96016023;96043785	+	96012131;96037654	96037542;96043785	MXE	ENSMUST00000132980.8	known	0.00	0.0	3.5	0;0	2;5	n	0.00	0.0	5.0	0;0	6;4	n	0.25	1.5	4.5	1;2	5;4	n	0.33	1.5	3.0	1;2	4;2	n	0.00	0.0	8.5	0;0	9;8	n	0.00	0.0	1.5	0;0	1;2	n	0.53	5.0	4.5	3;7	7;2	y	0.15	1.0	5.5	2;0	6;5	n	0.00	0.0	1.0	0;0	1;1	n	0.30	3.5	8.0	3;4	7;9	y	0.00	0.0	8.0	0;0	9;7	n	0.00	0.0	7.5	0;0	8;7	n	ENSMUSG00000038495.15	Otud7b	chr3	protein_coding	OTU domain containing 7B
known_NIR_12645	chr3	96465801	96466208	+	96465801	96466205	A3SS	ENSMUST00000074519.13	known	0.36	8	14	8	14	y	0.23	3	10	3	10	y	0.61	22	14	22	14	y	0.28	9	23	9	23	y	0.53	21	19	21	19	y	0.39	12	19	12	19	y	0.41	43	63	43	63	y	0.30	9	21	9	21	y	0.59	10	7	10	7	y	0.34	14	27	14	27	y	0.41	15	22	15	22	y	0.32	16	34	16	34	y	ENSMUSG00000038393.15	Txnip	chr3	protein_coding	thioredoxin interacting protein
known_NIR_12646	chr3	96489089	96501400	-	96489089;96489571	96489404;96501400	ES	ENSMUST00000091924.10	known	0.11	2	15.5	2	12;19	y	0.00	0	19.5	0	16;23	n	0.00	0	24.0	0	28;20	n	0.00	0	14.5	0	18;11	n	0.09	3	29.5	3	37;22	y	0.00	0	22.5	0	26;19	n	0.13	5	33.0	5	33;33	y	0.00	0	17.5	0	25;10	n	0.00	0	17.5	0	18;17	n	0.04	1	21.5	1	27;16	n	0.00	0	13.5	0	15;12	n	0.00	0	24.0	0	27;21	n	ENSMUSG00000028104.15	Polr3gl	chr3	protein_coding	polymerase (RNA) III (DNA directed) polypeptide G like
known_NIR_12647	chr3	96537677	96537793	+	96537677	96537796	A3SS	ENSMUST00000048915.11	known	0.46	96	111	96	111	y	0.44	81	105	81	105	y	0.40	84	127	84	127	y	0.55	113	92	113	92	y	0.48	124	132	124	132	y	0.36	37	67	37	67	y	0.52	123	115	123	115	y	0.49	57	59	57	59	y	0.45	59	72	59	72	y	0.46	103	123	103	123	y	0.55	90	75	90	75	y	0.50	88	88	88	88	y	ENSMUSG00000038374.11	Rbm8a	chr3	protein_coding	RNA binding motif protein 8a
known_NIR_12648	chr3	96543055	96543990	+	96542816	96543990	A5SS	ENSMUST00000144962.8	known	1.00	6	0	6	0	n	1.00	3	0	3	0	n	1.00	3	0	3	0	n	1.00	2	0	2	0	n	1.00	7	0	7	0	n	1.00	1	0	1	0	n	1.00	4	0	4	0	n	1.00	3	0	3	0	n	1.00	5	0	5	0	n	0.83	10	2	10	2	y	1.00	2	0	2	0	n	1.00	6	0	6	0	n	ENSMUSG00000028102.16	Pex11b	chr3	protein_coding	peroxisomal biogenesis factor 11 beta
known_NIR_12649	chr3	96543055	96543990	+	96543059	96543990	A5SS	ENSMUST00000118557.8	known	0.05	6	110	6	110	y	0.04	3	79	3	79	y	0.04	3	72	3	72	y	0.02	2	91	2	91	y	0.05	7	128	7	128	y	0.02	1	41	1	41	n	0.04	4	98	4	98	y	0.05	3	59	3	59	y	0.07	5	63	5	63	y	0.07	10	127	10	127	y	0.02	2	95	2	95	y	0.08	6	68	6	68	y	ENSMUSG00000028102.16	Pex11b	chr3	protein_coding	peroxisomal biogenesis factor 11 beta
known_NIR_12650	chr3	96543059	96543990	+	96542816	96543990	A5SS	ENSMUST00000144962.8	known	1.00	110	0	110	0	n	1.00	79	0	79	0	n	1.00	72	0	72	0	n	1.00	91	0	91	0	n	1.00	128	0	128	0	n	1.00	41	0	41	0	n	1.00	98	0	98	0	n	1.00	59	0	59	0	n	1.00	63	0	63	0	n	0.98	127	2	127	2	y	1.00	95	0	95	0	n	1.00	68	0	68	0	n	ENSMUSG00000028102.16	Pex11b	chr3	protein_coding	peroxisomal biogenesis factor 11 beta
known_NIR_12651	chr3	96604511	96606736	+	96603847	96606736	A5SS	ENSMUST00000107076.10	known	0.12	1	7	1	7	n	1.00	3	0	3	0	n	0.44	4	5	4	5	n	0.14	1	6	1	6	n	0.15	2	11	2	11	y	1.00	1	0	1	0	n	0.33	2	4	2	4	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.10	1	9	1	9	n	0.17	1	5	1	5	n	0.33	3	6	3	6	n	ENSMUSG00000028101.19	Pias3	chr3	protein_coding	protein inhibitor of activated STAT 3
known_NIR_12652	chr3	96610944	96611055	+	96610975	96611055	A5SS	ENSMUST00000107076.10	known	0.15	2	11	2	11	y	0.22	2	7	2	7	n	0.00	0	17	0	17	n	0.11	2	16	2	16	y	0.21	4	15	4	15	y	0.00	0	5	0	5	n	0.20	4	16	4	16	y	0.10	1	9	1	9	n	0.35	8	15	8	15	y	0.24	4	13	4	13	y	0.20	2	8	2	8	y	0.20	4	16	4	16	y	ENSMUSG00000028101.19	Pias3	chr3	protein_coding	protein inhibitor of activated STAT 3
known_NIR_12653	chr3	96633315	96634429	-	96633315	96634665	A5SS	ENSMUST00000029741.9	known	0.10	4	35	4	35	y	0.12	5	37	5	37	y	0.04	2	46	2	46	y	0.00	0	39	0	39	n	0.10	4	38	4	38	y	0.03	1	31	1	31	n	0.00	0	38	0	38	n	0.08	1	12	1	12	n	0.04	1	25	1	25	n	0.18	7	32	7	32	y	0.10	5	43	5	43	y	0.04	2	52	2	52	y	ENSMUSG00000028099.9	Polr3c	chr3	protein_coding	polymerase (RNA) III (DNA directed) polypeptide C
known_NIR_12654	chr3	96740035	96757544	+	96737472	96757544	A5SS	ENSMUST00000138014.8	known	0.05	3	56	3	56	y	0.05	3	57	3	57	y	0.00	0	58	0	58	n	0.00	0	91	0	91	n	0.02	2	82	2	82	y	0.07	3	42	3	42	y	0.00	0	86	0	86	n	0.00	0	46	0	46	n	0.00	0	78	0	78	n	0.02	3	122	3	122	y	0.01	1	75	1	75	n	0.00	0	73	0	73	n	ENSMUSG00000038298.15	Pdzk1	chr3	protein_coding	PDZ domain containing 1
known_NIR_12655	chr3	96787482	96787839	-	96787482	96787937	A5SS	ENSMUST00000029738.14	known	0.01	1	70	1	70	n	0.02	1	61	1	61	n	0.00	0	86	0	86	n	0.03	3	88	3	88	y	0.01	1	107	1	107	n	0.00	0	48	0	48	n	0.02	2	97	2	97	y	0.03	2	69	2	69	y	0.00	0	66	0	66	n	0.02	2	99	2	99	y	0.00	0	60	0	60	n	0.00	0	84	0	84	n	ENSMUSG00000028096.14	Gpr89	chr3	protein_coding	G protein-coupled receptor 89
known_NIR_12656	chr3	96800283	96800833	-	96800283	96800814	A5SS	ENSMUST00000029738.14	known	0.04	2	49	2	49	y	0.02	1	49	1	49	n	0.05	3	59	3	59	y	0.02	1	57	1	57	n	0.01	1	76	1	76	n	0.03	2	60	2	60	y	0.00	0	77	0	77	n	0.00	0	51	0	51	n	0.02	1	48	1	48	n	0.02	2	86	2	86	y	0.10	6	54	6	54	y	0.00	0	64	0	64	n	ENSMUSG00000028096.14	Gpr89	chr3	protein_coding	G protein-coupled receptor 89
known_NIR_12657	chr3	96800920;96801731	96801548;96804649	-	96800920	96804649	cassetteExon	ENSMUST00000029738.14	known	0.00	0.0	49	0;0	49	n	0.00	0.0	69	0;0	69	n	0.03	2.0	66	2;2	66	y	0.00	0.0	60	0;0	60	n	0.00	0.0	87	0;0	87	n	0.00	0.0	44	0;0	44	n	0.00	0.0	58	0;0	58	n	0.01	0.5	39	0;1	39	n	0.00	0.0	38	0;0	38	n	0.00	0.0	83	0;0	83	n	0.01	0.5	59	0;1	59	n	0.00	0.0	82	0;0	82	n	ENSMUSG00000028096.14	Gpr89	chr3	protein_coding	G protein-coupled receptor 89
known_NIR_12658	chr3	97536235	97536335	+	97536217	97536335	A5SS	ENSMUST00000107050.8	known	0.24	94	305	94	305	y	0.25	70	212	70	212	y	0.19	15	63	15	63	y	0.23	145	497	145	497	y	0.23	74	246	74	246	y	0.37	29	50	29	50	y	0.25	78	240	78	240	y	0.30	49	112	49	112	y	0.22	68	237	68	237	y	0.24	123	400	123	400	y	0.26	64	186	64	186	y	0.25	127	378	127	378	y	ENSMUSG00000028088.15	Fmo5	chr3	protein_coding	flavin containing monooxygenase 5
known_NIR_12659	chr3	97536511	97542827	+	97536511	97536888	3pMXE	ENSMUST00000133017.8	known	0.98	799	17	799	17	y	0.95	615	29	615	29	y	0.93	136	10	136	10	y	0.98	1143	23	1143	23	y	0.95	550	27	550	27	y	0.97	116	3	116	3	y	0.97	575	17	575	17	y	0.97	271	7	271	7	y	0.97	493	15	493	15	y	0.98	894	18	894	18	y	0.97	549	15	549	15	y	0.99	977	7	977	7	y	ENSMUSG00000028088.15	Fmo5	chr3	protein_coding	flavin containing monooxygenase 5
known_NIR_12660	chr3	97536511;97537044	97536888;97542827	+	97536511	97542827	cassetteExon	ENSMUST00000107050.8	known	0.03	20.5	799	17;24	799	y	0.06	38.5	615	29;48	615	y	0.05	7.5	136	10;5	136	y	0.02	26.0	1143	23;29	1143	y	0.05	28.0	550	27;29	550	y	0.02	2.5	116	3;2	116	y	0.03	17.0	575	17;17	575	y	0.03	7.0	271	7;7	271	y	0.03	15.0	493	15;15	493	y	0.02	20.5	894	18;23	894	y	0.03	17.0	549	15;19	549	y	0.01	10.5	977	7;14	977	y	ENSMUSG00000028088.15	Fmo5	chr3	protein_coding	flavin containing monooxygenase 5
known_NIR_12661	chr3	97614373;97616950	97616798;97617537	-	97614373	97617537	cassetteExon	ENSMUST00000168438.9	known	1.00	3.0	0	2;4	0	n	1.00	2.5	0	0;5	0	n	1.00	7.5	0	0;15	0	n	1.00	9.0	0	0;18	0	n	1.00	7.5	0	0;15	0	n	1.00	1.0	0	1;1	0	n	0.83	72.0	15	102;42	15	y	1.00	3.0	0	2;4	0	n	1.00	3.5	0	1;6	0	n	1.00	4.0	0	0;8	0	n	1.00	4.5	0	2;7	0	n	1.00	3.0	0	1;5	0	n	ENSMUSG00000038170.16	Pde4dip	chr3	protein_coding	phosphodiesterase 4D interacting protein (myomegalin)
known_NIR_12662	chr3	97666246	97673790	-	97666246	97700055	A5SS	ENSMUST00000168438.9	known	0.38	15	24	15	24	y	0.65	13	7	13	7	y	0.44	27	35	27	35	y	0.16	9	47	9	47	y	0.22	16	57	16	57	y	0.38	18	30	18	30	y	0.11	20	157	20	157	y	0.37	23	39	23	39	y	0.26	8	23	8	23	y	0.32	15	32	15	32	y	0.06	2	32	2	32	y	0.14	7	44	7	44	y	ENSMUSG00000038170.16	Pde4dip	chr3	protein_coding	phosphodiesterase 4D interacting protein (myomegalin)
known_NIR_12663	chr3	97808736	97814541	+	97808736	97814537	A3SS	ENSMUST00000029476.9	known	0.04	5	134	5	134	y	0.07	8	109	8	109	y	0.06	16	257	16	257	y	0.06	8	136	8	136	y	0.03	7	214	7	214	y	0.06	9	149	9	149	y	0.06	10	159	10	159	y	0.06	9	152	9	152	y	0.06	6	88	6	88	y	0.07	11	145	11	145	y	0.07	10	137	10	137	y	0.03	5	140	5	140	y	ENSMUSG00000027879.10	Sec22b	chr3	protein_coding	SEC22 homolog B, vesicle trafficking protein
known_NIR_12664	chr3	9817546	9898271	-	9817546;9852380	9852322;9898271	ES	ENSMUST00000161949.8	known	0.00	0	1.0	0	1;1	n	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	0.50	4	4.0	4	4;4	y	0.00	0	2.5	0	2;3	n	0.00	0	0.5	0	0;1	n	0.33	1	2.0	1	2;2	n	1.00	2	0.0	2	0;0	n	0.33	1	2.0	1	2;2	n	0.40	1	1.5	1	0;3	n	0.00	0	0.5	0	1;0	n	0.75	3	1.0	3	2;0	n	ENSMUSG00000027508.16	Pag1	chr3	protein_coding	phosphoprotein associated with glycosphingolipid microdomains 1
known_NIR_12665	chr3	98627057	98631149	-	98627100	98631149	A3SS	ENSMUST00000107022.8	known	0.47	27	30	27	30	y	0.34	14	27	14	27	y	-	-	-	-	-	-	0.36	34	60	34	60	y	0.24	10	31	10	31	y	-	-	-	-	-	-	0.38	19	31	19	31	y	1.00	3	0	3	0	n	0.39	37	57	37	57	y	0.45	68	83	68	83	y	0.40	36	54	36	54	y	0.47	60	67	60	67	y	ENSMUSG00000063730.14	Hsd3b2	chr3	protein_coding	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2
known_NIR_12666	chr3	98650011;98651303	98651139;98660627	-	98650011	98660627	cassetteExon	ENSMUST00000107018.8	known	0.90	242.5	27	167;318	27	y	0.87	139.5	21	116;163	21	y	1.00	3.5	0	3;4	0	n	0.90	363.0	41	243;483	41	y	0.91	161.0	15	105;217	15	y	1.00	4.0	0	2;6	0	n	0.85	199.5	34	132;267	34	y	0.93	14.0	1	6;22	1	n	0.93	364.0	26	212;516	26	y	0.92	427.5	35	281;574	35	y	0.91	400.5	38	297;504	38	y	0.89	519.5	64	341;698	64	y	ENSMUSG00000062410.15	Hsd3b3	chr3	protein_coding	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 3
known_NIR_12667	chr3	98669669	98670327	-	98660779	98670327	A3SS	ENSMUST00000107018.8	known	0.33	80	164	80	164	y	0.33	37	74	37	74	y	0.00	0	3	0	3	n	0.31	109	239	109	239	y	0.34	54	104	54	104	y	0.00	0	3	0	3	n	0.33	75	152	75	152	y	0.36	8	14	8	14	y	0.34	123	243	123	243	y	0.33	139	287	139	287	y	0.36	112	200	112	200	y	0.31	158	353	158	353	y	ENSMUSG00000062410.15	Hsd3b3	chr3	protein_coding	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 3
known_NIR_12668	chr3	99048504	99111852	+	99048504;99095054	99094797;99111852	ES	ENSMUST00000004343.7	known	0.33	3	6.0	3	5;7	y	0.00	0	5.5	0	5;6	n	0.00	0	11.0	0	7;15	n	0.00	0	6.0	0	9;3	n	0.00	0	10.5	0	6;15	n	0.00	0	6.0	0	5;7	n	0.17	1	5.0	1	2;8	n	0.00	0	6.0	0	6;6	n	0.00	0	3.5	0	6;1	n	0.00	0	14.0	0	11;17	n	0.00	0	2.5	0	2;3	n	0.00	0	8.5	0	5;12	n	ENSMUSG00000004233.15	Wars2	chr3	protein_coding	tryptophanyl tRNA synthetase 2 (mitochondrial)
known_NIR_12669	chr3	99112626;99112766	99112716;99121972	+	99112626	99121972	cassetteExon	ENSMUST00000004343.7	known	0.08	0.5	6	1;0	6	n	0.20	1.0	4	2;0	4	n	0.00	0.0	11	0;0	11	n	0.27	3.0	8	4;2	8	y	0.20	2.0	8	2;2	8	y	0.06	0.5	8	1;0	8	n	0.00	0.0	6	0;0	6	n	0.23	1.5	5	2;1	5	n	1.00	0.5	0	0;1	0	n	0.15	2.0	11	3;1	11	n	0.00	0.0	3	0;0	3	n	0.03	0.5	16	1;0	16	n	ENSMUSG00000004233.15	Wars2	chr3	protein_coding	tryptophanyl tRNA synthetase 2 (mitochondrial)
known_NIR_12670	chr4	101051060;101055177	101054973;101122239	-	101051060	101122239	cassetteExon	ENSMUST00000102781.10	known	0.10	4.0	35	2;6	35	y	0.03	1.0	31	1;1	31	n	0.08	6.0	72	10;2	72	y	0.09	5.5	53	7;4	53	y	0.03	2.0	64	3;1	64	n	0.10	6.0	53	7;5	53	y	0.14	11.0	66	17;5	66	y	0.06	3.0	44	4;2	44	y	0.12	4.5	33	6;3	33	y	0.06	4.5	75	6;3	75	y	0.06	1.5	24	1;2	24	n	0.05	2.5	43	5;0	43	n	ENSMUSG00000028530.15	Jak1	chr4	protein_coding	Janus kinase 1
known_NIR_12671	chr4	101276598	101276926	+	101276567	101276926	A5SS	ENSMUST00000102780.8	known	0.30	3	7	3	7	y	0.18	2	9	2	9	y	0.20	2	8	2	8	y	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.19	3	13	3	13	y	0.20	3	12	3	12	y	0.00	0	4	0	4	n	ENSMUSG00000028527.19	Ak4	chr4	protein_coding	adenylate kinase 4
known_NIR_12672	chr4	101276598	101276926	+	101276753	101276926	A5SS	ENSMUST00000106946.8	known	0.14	3	19	3	19	y	0.10	2	19	2	19	y	0.09	2	20	2	20	y	0.00	0	14	0	14	n	0.00	0	26	0	26	n	0.00	0	18	0	18	n	0.00	0	27	0	27	n	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.12	3	22	3	22	y	0.11	3	25	3	25	y	0.00	0	13	0	13	n	ENSMUSG00000028527.19	Ak4	chr4	protein_coding	adenylate kinase 4
known_NIR_12673	chr4	101276753	101276926	+	101276567	101276926	A5SS	ENSMUST00000102780.8	known	0.73	19	7	19	7	y	0.68	19	9	19	9	y	0.71	20	8	20	8	y	0.74	14	5	14	5	y	0.79	26	7	26	7	y	0.82	18	4	18	4	y	0.87	27	4	27	4	y	0.79	15	4	15	4	y	0.86	12	2	12	2	y	0.63	22	13	22	13	y	0.68	25	12	25	12	y	0.76	13	4	13	4	y	ENSMUSG00000028527.19	Ak4	chr4	protein_coding	adenylate kinase 4
known_NIR_12674	chr4	101277162	101317697	+	101277162;101304476	101304357;101317697	ES	ENSMUST00000102780.8	known	0.02	1	41.0	1	39;43	n	0.00	0	49.5	0	45;54	n	0.00	0	124.0	0	113;135	n	0.00	0	103.0	0	100;106	n	0.00	0	87.0	0	74;100	n	0.00	0	54.0	0	42;66	n	0.01	1	83.0	1	76;90	n	0.00	0	74.0	0	73;75	n	0.00	0	56.0	0	45;67	n	0.01	1	148.5	1	127;170	n	0.02	2	80.0	2	74;86	y	0.00	0	118.5	0	92;145	n	ENSMUSG00000028527.19	Ak4	chr4	protein_coding	adenylate kinase 4
known_NIR_12675	chr4	101277162	101317697	+	101304476	101317697	5pMXE	ENSMUST00000155749.2	known	0.02	1	43	1	43	n	0.00	0	54	0	54	n	0.00	0	135	0	135	n	0.00	0	106	0	106	n	0.00	0	100	0	100	n	0.00	0	66	0	66	n	0.01	1	90	1	90	n	0.00	0	75	0	75	n	0.00	0	67	0	67	n	0.01	1	170	1	170	n	0.02	2	86	2	86	y	0.00	0	145	0	145	n	ENSMUSG00000028527.19	Ak4	chr4	protein_coding	adenylate kinase 4
known_NIR_12676	chr4	101277944	101304357	+	101277162	101304357	A5SS	ENSMUST00000102780.8	known	0.05	2	39	2	39	y	0.00	0	45	0	45	n	0.01	1	113	1	113	n	0.02	2	100	2	100	y	0.01	1	74	1	74	n	0.00	0	42	0	42	n	0.00	0	76	0	76	n	0.00	0	73	0	73	n	0.00	0	45	0	45	n	0.00	0	127	0	127	n	0.01	1	74	1	74	n	0.00	0	92	0	92	n	ENSMUSG00000028527.19	Ak4	chr4	protein_coding	adenylate kinase 4
known_NIR_12677	chr4	101317869	101320185	+	101317869	101320146	A3SS	ENSMUST00000102780.8	known	0.00	0	47	0	47	n	0.00	0	57	0	57	n	0.00	0	121	0	121	n	0.00	0	107	0	107	n	0.00	0	99	0	99	n	0.00	0	70	0	70	n	0.00	0	74	0	74	n	0.00	0	60	0	60	n	0.00	0	54	0	54	n	0.00	0	157	0	157	n	0.00	0	61	0	61	n	0.03	3	116	3	116	y	ENSMUSG00000028527.19	Ak4	chr4	protein_coding	adenylate kinase 4
known_NIR_12678	chr4	102972020	102972757	+	102971716	102972757	A5SS	ENSMUST00000136092.2	known	0.00	0	5	0	5	n	0.67	2	1	2	1	n	0.00	0	8	0	8	n	1.00	2	0	2	0	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.14	1	6	1	6	n	-	-	-	-	-	-	0.33	2	4	2	4	n	0.21	3	11	3	11	y	0.25	1	3	1	3	n	0.25	3	9	3	9	y	ENSMUSG00000028522.17	Mier1	chr4	protein_coding	MEIR1 treanscription regulator
known_NIR_12679	chr4	102976706	102984470	+	102975512	102984470	A5SS	ENSMUST00000106858.8	known	0.82	14	3	14	3	y	0.50	7	7	7	7	y	0.64	18	10	18	10	y	0.61	14	9	14	9	y	0.67	16	8	16	8	y	0.41	7	10	7	10	y	0.79	11	3	11	3	y	0.31	4	9	4	9	y	0.62	5	3	5	3	n	0.58	14	10	14	10	y	0.86	12	2	12	2	y	0.77	23	7	23	7	y	ENSMUSG00000028522.17	Mier1	chr4	protein_coding	MEIR1 treanscription regulator
known_NIR_12680	chr4	103042101	103046984	-	103042101	103062303	A5SS	ENSMUST00000150285.8	known	1.00	82	0	82	0	n	1.00	54	0	54	0	n	1.00	94	0	94	0	n	0.99	135	2	135	2	y	1.00	168	0	168	0	n	0.98	43	1	43	1	n	0.99	116	1	116	1	n	0.99	83	1	83	1	n	1.00	87	0	87	0	n	1.00	181	0	181	0	n	1.00	73	0	73	0	n	1.00	154	0	154	0	n	ENSMUSG00000028521.18	Slc35d1	chr4	protein_coding	solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1
known_NIR_12681	chr4	103048096	103062303	-	103042101	103062303	A3SS	ENSMUST00000150285.8	known	1.00	75	0	75	0	n	1.00	62	0	62	0	n	1.00	119	0	119	0	n	0.99	147	2	147	2	y	1.00	154	0	154	0	n	0.98	61	1	61	1	n	0.99	122	1	122	1	n	0.99	77	1	77	1	n	1.00	78	0	78	0	n	1.00	188	0	188	0	n	1.00	82	0	82	0	n	1.00	141	0	141	0	n	ENSMUSG00000028521.18	Slc35d1	chr4	protein_coding	solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1
known_NIR_12682	chr4	103210848	103228929	+	103210848	103223170	3pMXE	ENSMUST00000035780.4	known	0.03	2	67	2	67	y	0.00	0	60	0	60	n	0.00	0	44	0	44	n	0.00	0	41	0	41	n	0.02	1	59	1	59	n	0.00	0	25	0	25	n	0.07	6	82	6	82	y	0.02	1	42	1	42	n	0.00	0	57	0	57	n	0.00	0	92	0	92	n	0.03	2	73	2	73	y	0.00	0	59	0	59	n	ENSMUSG00000035069.4	Oma1	chr4	protein_coding	OMA1 zinc metallopeptidase
known_NIR_12683	chr4	103262559	103348792	+	103291129	103348792	A5SS&ES	ENSMUST00000150345.2	known	0.88	7	1	7	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.58	7	5	7	5	y	1.00	6	0	6	0	n	1.00	5	0	5	0	n	0.91	10	1	10	1	n	ENSMUSG00000086136.2	Gm12718	chr4	lncRNA	predicted gene 12718
known_NIR_12684	chr4	104641728	104647672	+	104641728;104644195	104643998;104647672	ES	ENSMUST00000031663.10	known	0.01	4	708.5	4	624;793	y	0.00	1	595.5	1	524;667	n	0.00	2	482.5	2	433;532	y	0.00	0	1021.0	0	950;1092	n	0.00	4	971.5	4	841;1102	y	0.01	3	348.0	3	333;363	y	0.00	2	691.0	2	645;737	y	0.00	0	472.5	0	446;499	n	0.00	1	795.0	1	747;843	n	0.00	3	1016.5	3	916;1117	y	0.00	0	794.5	0	710;879	n	0.00	0	1156.5	0	1032;1281	n	ENSMUSG00000029656.14	C8b	chr4	protein_coding	complement component 8, beta polypeptide
known_NIR_12685	chr4	104703332	104710939	-	104673309	104710939	A3SS	ENSMUST00000152146.2	known	0.98	1265	32	1265	32	y	1.00	1004	0	1004	0	n	1.00	1123	0	1123	0	n	1.00	1753	0	1753	0	n	1.00	1977	0	1977	0	n	1.00	822	0	822	0	n	1.00	1542	0	1542	0	n	1.00	1088	0	1088	0	n	1.00	1237	0	1237	0	n	0.97	2098	74	2098	74	y	1.00	1146	0	1146	0	n	1.00	1908	0	1908	0	n	ENSMUSG00000035031.16	C8a	chr4	protein_coding	complement component 8, alpha polypeptide
known_NIR_12686	chr4	104719937;104722744	104722651;104733477	-	104719937	104733477	cassetteExon	ENSMUST00000106808.10	known	0.94	825.0	53	854;796	53	y	0.89	601.0	72	628;574	72	y	0.91	839.0	86	831;847	86	y	0.94	1385.5	83	1383;1388	83	y	0.94	1477.0	97	1507;1447	97	y	0.91	609.0	60	617;601	60	y	0.94	1094.5	70	1132;1057	70	y	0.90	819.0	89	810;828	89	y	0.92	931.5	83	945;918	83	y	0.92	1605.5	145	1630;1581	145	y	0.92	787.5	69	790;785	69	y	0.94	1439.5	100	1519;1360	100	y	ENSMUSG00000035031.16	C8a	chr4	protein_coding	complement component 8, alpha polypeptide
known_NIR_12687	chr4	106215671	106216213	+	106215671	106216210	A3SS	ENSMUST00000165709.8	known	1.00	8	0	8	0	n	1.00	9	0	9	0	n	1.00	18	0	18	0	n	1.00	20	0	20	0	n	1.00	25	0	25	0	n	0.71	12	5	12	5	y	1.00	14	0	14	0	n	1.00	13	0	13	0	n	1.00	10	0	10	0	n	1.00	44	0	44	0	n	1.00	12	0	12	0	n	1.00	28	0	28	0	n	ENSMUSG00000028514.16	Usp24	chr4	protein_coding	ubiquitin specific peptidase 24
known_NIR_12688	chr4	106866965	106885390	+	106866965;106884494	106884414;106885390	ES	ENSMUST00000150915.8	known	0.98	82	2.0	82	3;1	n	0.98	72	1.5	72	1;2	n	0.94	59	4.0	59	4;4	y	0.96	87	3.5	87	3;4	y	0.96	109	4.5	109	4;5	y	0.92	29	2.5	29	2;3	y	0.96	65	2.5	65	0;5	n	0.93	69	5.0	69	6;4	y	0.96	82	3.5	82	2;5	y	0.96	139	6.5	139	9;4	y	0.96	103	4.5	103	4;5	y	0.93	99	7.0	99	5;9	y	ENSMUSG00000061887.15	Ssbp3	chr4	protein_coding	single-stranded DNA binding protein 3
known_NIR_12689	chr4	106888288	106894109	+	106888288	106894133	A3SS	ENSMUST00000030367.15	known	0.02	2	79	2	79	y	0.01	1	84	1	84	n	0.02	1	61	1	61	n	0.02	2	85	2	85	y	0.02	3	155	3	155	y	0.04	2	44	2	44	y	0.00	0	110	0	110	n	0.04	2	54	2	54	y	0.01	1	71	1	71	n	0.02	3	129	3	129	y	0.01	1	110	1	110	n	0.02	3	149	3	149	y	ENSMUSG00000061887.15	Ssbp3	chr4	protein_coding	single-stranded DNA binding protein 3
known_NIR_12690	chr4	106926020	106928067	+	106927744	106928067	A5SS	ENSMUST00000156406.8	known	1.00	23	0	23	0	n	0.85	17	3	17	3	y	1.00	12	0	12	0	n	0.83	25	5	25	5	y	1.00	28	0	28	0	n	1.00	7	0	7	0	n	0.96	51	2	51	2	y	0.93	14	1	14	1	n	0.82	23	5	23	5	y	0.95	40	2	40	2	y	1.00	34	0	34	0	n	1.00	33	0	33	0	n	ENSMUSG00000028621.18	Cyb5rl	chr4	protein_coding	cytochrome b5 reductase-like
known_NIR_12691	chr4	106931157	106938088	+	106931157;106934977	106934873;106938088	ES	ENSMUST00000106758.8	known	0.15	4	22.0	4	20;24	y	0.22	4	14.5	4	22;7	y	0.00	0	11.0	0	14;8	n	0.23	4	13.5	4	8;19	y	0.00	0	23.0	0	22;24	n	0.18	1	4.5	1	5;4	n	0.12	3	22.5	3	23;22	y	0.00	0	20.0	0	22;18	n	0.10	2	18.0	2	18;18	y	0.10	3	26.0	3	30;22	y	0.05	1	20.5	1	28;13	n	0.12	3	21.5	3	20;23	y	ENSMUSG00000028621.18	Cyb5rl	chr4	protein_coding	cytochrome b5 reductase-like
known_NIR_12692	chr4	106934977	106938088	+	106934977	106935191	3pMXE	ENSMUST00000156406.8	known	0.96	24	1	24	1	n	1.00	7	0	7	0	n	1.00	8	0	8	0	n	1.00	19	0	19	0	n	1.00	24	0	24	0	n	1.00	4	0	4	0	n	1.00	22	0	22	0	n	1.00	18	0	18	0	n	1.00	18	0	18	0	n	0.85	22	4	22	4	y	0.93	13	1	13	1	n	1.00	23	0	23	0	n	ENSMUSG00000028621.18	Cyb5rl	chr4	protein_coding	cytochrome b5 reductase-like
known_NIR_12693	chr4	106938291	106938417	+	106938291	106941324	A3SS	ENSMUST00000106758.8	known	0.00	0	29	0	29	n	0.00	0	22	0	22	n	0.00	0	15	0	15	n	0.00	0	26	0	26	n	0.10	4	37	4	37	y	0.10	1	9	1	9	n	0.00	0	25	0	25	n	0.00	0	18	0	18	n	0.00	0	22	0	22	n	0.00	0	37	0	37	n	0.00	0	24	0	24	n	0.07	2	27	2	27	y	ENSMUSG00000028621.18	Cyb5rl	chr4	protein_coding	cytochrome b5 reductase-like
known_NIR_12694	chr4	107030336	107034762	-	107022886	107034762	A3SS	ENSMUST00000057043.10	known	0.07	3	40	3	40	y	0.10	3	27	3	27	y	0.15	10	56	10	56	y	0.06	2	34	2	34	y	0.06	4	66	4	66	y	0.00	0	26	0	26	n	0.02	1	43	1	43	n	0.03	1	28	1	28	n	0.04	2	48	2	48	y	0.03	1	36	1	36	n	0.04	2	46	2	46	y	0.04	2	53	2	53	y	ENSMUSG00000028619.16	Tceanc2	chr4	protein_coding	transcription elongation factor A (SII) N-terminal and central domain containing 2
known_NIR_12695	chr4	107033821	107034762	-	107022886	107034762	A3SS	ENSMUST00000057043.10	known	0.00	0	40	0	40	n	0.00	0	27	0	27	n	0.00	0	56	0	56	n	0.11	4	34	4	34	y	0.06	4	66	4	66	y	0.00	0	26	0	26	n	0.00	0	43	0	43	n	0.03	1	28	1	28	n	0.00	0	48	0	48	n	0.00	0	36	0	36	n	0.00	0	46	0	46	n	0.04	2	53	2	53	y	ENSMUSG00000028619.16	Tceanc2	chr4	protein_coding	transcription elongation factor A (SII) N-terminal and central domain containing 2
known_NIR_12696	chr4	107036292	107042975	+	107036114	107042975	A5SS	ENSMUST00000030361.11	known	0.00	0	754	0	754	n	0.00	3	648	3	648	y	0.00	0	732	0	732	n	0.00	0	993	0	993	n	0.00	2	1108	2	1108	y	0.00	0	444	0	444	n	0.00	1	1003	1	1003	n	0.00	0	611	0	611	n	0.00	2	773	2	773	y	0.00	0	1270	0	1270	n	0.00	0	786	0	786	n	0.00	0	1121	0	1121	n	ENSMUSG00000028618.12	Tmem59	chr4	protein_coding	transmembrane protein 59
known_NIR_12697	chr4	107111159	107119664	+	107110924	107119664	A5SS	ENSMUST00000152717.8	known	0.91	10	1	10	1	n	1.00	6	0	6	0	n	1.00	7	0	7	0	n	0.83	5	1	5	1	n	0.90	9	1	9	1	n	1.00	1	0	1	0	n	0.91	10	1	10	1	n	1.00	2	0	2	0	n	1.00	2	0	2	0	n	0.64	7	4	7	4	y	0.82	9	2	9	2	y	0.00	0	2	0	2	n	ENSMUSG00000063172.14	Hspb11	chr4	protein_coding	heat shock protein family B (small), member 11
known_NIR_12698	chr4	107111159	107119664	+	107111192	107119664	A5SS	ENSMUST00000156934.8	known	0.71	10	4	10	4	y	0.46	6	7	6	7	y	0.41	7	10	7	10	y	0.38	5	8	5	8	y	0.56	9	7	9	7	y	0.20	1	4	1	4	n	0.40	10	15	10	15	y	0.40	2	3	2	3	n	0.40	2	3	2	3	n	0.35	7	13	7	13	y	0.75	9	3	9	3	y	0.00	0	12	0	12	n	ENSMUSG00000063172.14	Hspb11	chr4	protein_coding	heat shock protein family B (small), member 11
known_NIR_12699	chr4	107111192	107119664	+	107110924	107119664	A5SS	ENSMUST00000152717.8	known	0.80	4	1	4	1	n	1.00	7	0	7	0	n	1.00	10	0	10	0	n	0.89	8	1	8	1	n	0.88	7	1	7	1	n	1.00	4	0	4	0	n	0.94	15	1	15	1	n	1.00	3	0	3	0	n	1.00	3	0	3	0	n	0.76	13	4	13	4	y	0.60	3	2	3	2	n	0.86	12	2	12	2	y	ENSMUSG00000063172.14	Hspb11	chr4	protein_coding	heat shock protein family B (small), member 11
known_NIR_12700	chr4	107149619	107154794	-	107149619;107151145	107150946;107154794	ES	ENSMUST00000082426.11	known	0.00	0	216.5	0	251;182	n	0.00	0	241.5	0	282;201	n	0.00	1	270.0	1	298;242	n	0.01	2	377.5	2	399;356	y	0.00	0	431.5	0	495;368	n	0.00	0	280.0	0	331;229	n	0.00	0	364.0	0	415;313	n	0.00	0	209.5	0	231;188	n	0.00	0	297.5	0	313;282	n	0.01	3	409.0	3	483;335	y	0.00	0	288.5	0	332;245	n	0.00	0	121.0	0	137;105	n	ENSMUSG00000034785.16	Dio1	chr4	protein_coding	deiodinase, iodothyronine, type I
known_NIR_12701	chr4	107149619;107151145	107150946;107163979	-	107149619;107154937	107154794;107163979	MXE	ENSMUST00000150974.2	known	0.49	126.0	130.5	251;1	0;261	n	0.52	143.5	133.5	282;5	0;267	n	0.51	150.5	146.5	298;3	1;292	n	0.46	202.0	239.5	399;5	2;477	y	0.53	249.5	224.5	495;4	0;449	n	0.53	168.0	148.0	331;5	0;296	n	0.52	211.0	191.5	415;7	0;383	n	0.49	117.0	122.0	231;3	0;244	n	0.47	158.5	175.5	313;4	0;351	n	0.47	242.5	272.5	483;2	3;542	y	0.46	166.5	194.0	332;1	0;388	n	0.52	68.5	62.0	137;0	0;124	n	ENSMUSG00000034785.16	Dio1	chr4	protein_coding	deiodinase, iodothyronine, type I
known_NIR_12702	chr4	107151145	107163979	-	107151145	107154794	A5SS&ES	ENSMUST00000134366.8	known	0.01	1	182	1	182	n	0.02	5	201	5	201	y	0.01	3	242	3	242	y	0.01	5	356	5	356	y	0.01	4	368	4	368	y	0.02	5	229	5	229	y	0.02	7	313	7	313	y	0.02	3	188	3	188	y	0.01	4	282	4	282	y	0.01	2	335	2	335	y	0.00	1	245	1	245	n	0.00	0	105	0	105	n	ENSMUSG00000034785.16	Dio1	chr4	protein_coding	deiodinase, iodothyronine, type I
known_NIR_12703	chr4	107151145	107163979	-	107151145;107154937	107154794;107163979	ES	ENSMUST00000082426.11	known	0.00	1	221.5	1	182;261	n	0.02	5	234.0	5	201;267	y	0.01	3	267.0	3	242;292	y	0.01	5	416.5	5	356;477	y	0.01	4	408.5	4	368;449	y	0.02	5	262.5	5	229;296	y	0.02	7	348.0	7	313;383	y	0.01	3	216.0	3	188;244	y	0.01	4	316.5	4	282;351	y	0.00	2	438.5	2	335;542	y	0.00	1	316.5	1	245;388	n	0.00	0	114.5	0	105;124	n	ENSMUSG00000034785.16	Dio1	chr4	protein_coding	deiodinase, iodothyronine, type I
known_NIR_12704	chr4	107154937	107164088	-	107154937	107163979	A5SS	ENSMUST00000082426.11	known	0.00	1	261	1	261	n	0.01	3	267	3	267	y	0.00	0	292	0	292	n	0.01	6	477	6	477	y	0.00	2	449	2	449	y	0.00	1	296	1	296	n	0.00	0	383	0	383	n	0.00	0	244	0	244	n	0.01	4	351	4	351	y	0.01	3	542	3	542	y	0.01	5	388	5	388	y	0.00	0	124	0	124	n	ENSMUSG00000034785.16	Dio1	chr4	protein_coding	deiodinase, iodothyronine, type I
known_NIR_12705	chr4	107172477	107172960	+	107171659	107172960	A5SS	ENSMUST00000075693.12	known	0.00	0	94	0	94	n	0.00	0	100	0	100	n	0.01	1	83	1	83	n	0.00	0	139	0	139	n	0.01	1	162	1	162	n	0.00	0	63	0	63	n	0.00	0	134	0	134	n	0.04	3	82	3	82	y	0.00	0	89	0	89	n	0.00	0	134	0	134	n	0.01	1	94	1	94	n	0.02	2	117	2	117	y	ENSMUSG00000057375.14	Yipf1	chr4	protein_coding	Yip1 domain family, member 1
known_NIR_12706	chr4	107176302	107193634	+	107176302;107193391	107193311;107193634	ES	ENSMUST00000075693.12	known	0.02	3	119.5	3	138;101	y	0.00	0	104.5	0	115;94	n	0.00	0	101.5	0	116;87	n	0.02	2	117.0	2	132;102	y	0.01	2	134.0	2	143;125	y	0.01	1	72.5	1	88;57	n	0.01	2	143.0	2	163;123	y	0.00	0	78.5	0	88;69	n	0.01	1	104.0	1	117;91	n	0.00	0	159.0	0	187;131	n	0.00	0	114.5	0	119;110	n	0.01	2	138.0	2	149;127	y	ENSMUSG00000057375.14	Yipf1	chr4	protein_coding	Yip1 domain family, member 1
known_NIR_12707	chr4	107192904	107193311	+	107176302	107193311	A5SS	ENSMUST00000075693.12	known	0.00	0	138	0	138	n	0.00	0	115	0	115	n	0.00	0	116	0	116	n	0.00	0	132	0	132	n	0.00	0	143	0	143	n	0.00	0	88	0	88	n	0.00	0	163	0	163	n	0.04	4	88	4	88	y	0.02	2	117	2	117	y	0.00	0	187	0	187	n	0.00	0	119	0	119	n	0.00	0	149	0	149	n	ENSMUSG00000057375.14	Yipf1	chr4	protein_coding	Yip1 domain family, member 1
known_NIR_12708	chr4	107202388	107216804	+	107202388	107207611	3pMXE	ENSMUST00000139527.8	known	0.03	7	226	7	226	y	0.00	1	245	1	245	n	0.00	0	179	0	179	n	0.02	4	214	4	214	y	0.03	8	247	8	247	y	0.02	3	127	3	127	y	0.01	3	291	3	291	y	0.03	5	140	5	140	y	0.01	2	161	2	161	y	0.03	11	307	11	307	y	0.04	9	237	9	237	y	0.05	12	221	12	221	y	ENSMUSG00000057375.14	Yipf1	chr4	protein_coding	Yip1 domain family, member 1
known_NIR_12709	chr4	107202388	107216804	+	107202388;107207735	107207611;107216804	ES	ENSMUST00000075693.12	known	0.04	7	188.0	7	226;150	y	0.00	1	207.0	1	245;169	n	0.00	0	143.5	0	179;108	n	0.02	4	175.5	4	214;137	y	0.04	8	201.0	8	247;155	y	0.03	3	95.5	3	127;64	y	0.01	3	237.5	3	291;184	y	0.04	5	111.5	5	140;83	y	0.01	2	140.0	2	161;119	y	0.04	11	237.0	11	307;167	y	0.04	9	199.0	9	237;161	y	0.06	12	175.0	12	221;129	y	ENSMUSG00000057375.14	Yipf1	chr4	protein_coding	Yip1 domain family, member 1
known_NIR_12710	chr4	107202388	107216804	+	107207735	107216804	A5SS&ES	ENSMUST00000124254.2	known	0.04	7	150	7	150	y	0.01	1	169	1	169	n	0.00	0	108	0	108	n	0.03	4	137	4	137	y	0.05	8	155	8	155	y	0.04	3	64	3	64	y	0.02	3	184	3	184	y	0.06	5	83	5	83	y	0.02	2	119	2	119	y	0.06	11	167	11	167	y	0.05	9	161	9	161	y	0.09	12	129	12	129	y	ENSMUSG00000057375.14	Yipf1	chr4	protein_coding	Yip1 domain family, member 1
known_NIR_12711	chr4	107747210	107747316	+	107747093	107747316	A5SS	ENSMUST00000135454.8	known	0.01	1	66	1	66	n	0.01	1	66	1	66	n	0.03	2	72	2	72	y	0.04	3	65	3	65	y	0.04	4	85	4	85	y	0.03	1	36	1	36	n	0.04	3	76	3	76	y	0.02	1	45	1	45	n	0.00	0	44	0	44	n	0.12	9	68	9	68	y	0.00	0	67	0	67	n	0.02	1	50	1	50	n	ENSMUSG00000028608.16	Czib	chr4	protein_coding	CXXC motif containing zinc binding protein
known_NIR_12712	chr4	107747746	107748662	+	107747399	107748662	A5SS	ENSMUST00000135454.8	known	0.03	4	115	4	115	y	0.02	3	120	3	120	y	0.01	2	133	2	133	y	0.00	0	122	0	122	n	0.00	0	156	0	156	n	0.03	2	68	2	68	y	0.01	2	145	2	145	y	0.01	1	84	1	84	n	0.02	2	85	2	85	y	0.01	1	139	1	139	n	0.03	4	138	4	138	y	0.01	1	123	1	123	n	ENSMUSG00000028608.16	Czib	chr4	protein_coding	CXXC motif containing zinc binding protein
known_NIR_12713	chr4	107748718	107749157	+	107748718	107749152	A3SS	ENSMUST00000135454.8	known	0.01	1	110	1	110	n	0.01	1	105	1	105	n	0.01	1	110	1	110	n	0.01	1	117	1	117	n	0.01	1	147	1	147	n	0.00	0	65	0	65	n	0.00	0	132	0	132	n	0.01	1	78	1	78	n	0.02	2	87	2	87	y	0.00	0	154	0	154	n	0.01	1	149	1	149	n	0.01	2	139	2	139	y	ENSMUSG00000028608.16	Czib	chr4	protein_coding	CXXC motif containing zinc binding protein
known_NIR_12714	chr4	107752135	107752748	+	107752135	107754068	A3SS	ENSMUST00000135454.8	known	0.00	0	87	0	87	n	0.00	0	108	0	108	n	0.00	0	107	0	107	n	0.00	0	104	0	104	n	0.01	1	106	1	106	n	0.05	3	63	3	63	y	0.00	0	110	0	110	n	0.00	0	83	0	83	n	0.01	1	68	1	68	n	0.02	3	121	3	121	y	0.00	0	113	0	113	n	0.01	1	80	1	80	n	ENSMUSG00000028608.16	Czib	chr4	protein_coding	CXXC motif containing zinc binding protein
known_NIR_12715	chr4	107761760	107764118	-	107761760	107769838	A5SS	ENSMUST00000106720.9	known	1.00	270	0	270	0	n	1.00	368	1	368	1	n	0.99	418	5	418	5	y	1.00	340	0	340	0	n	1.00	452	0	452	0	n	0.99	274	2	274	2	y	1.00	515	1	515	1	n	1.00	228	0	228	0	n	1.00	259	0	259	0	n	1.00	474	1	474	1	n	1.00	446	0	446	0	n	1.00	358	0	358	0	n	ENSMUSG00000028607.17	Cpt2	chr4	protein_coding	carnitine palmitoyltransferase 2
known_NIR_12716	chr4	107761760	107769838	-	107761760;107765422	107764118;107769838	ES	ENSMUST00000030345.15	known	0.00	0	204.5	0	270;139	n	0.00	1	238.0	1	368;108	n	0.01	5	336.0	5	418;254	y	0.00	0	295.0	0	340;250	n	0.00	0	346.0	0	452;240	n	0.01	2	220.5	2	274;167	y	0.00	1	401.5	1	515;288	n	0.00	0	199.5	0	228;171	n	0.00	0	200.5	0	259;142	n	0.00	1	391.0	1	474;308	n	0.00	0	326.5	0	446;207	n	0.00	0	304.0	0	358;250	n	ENSMUSG00000028607.17	Cpt2	chr4	protein_coding	carnitine palmitoyltransferase 2
known_NIR_12717	chr4	107765284	107769838	-	107761760	107769838	A3SS	ENSMUST00000106720.9	known	-	-	-	-	-	-	0.00	0	1	0	1	n	0.55	6	5	6	5	y	1.00	12	0	12	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.92	11	1	11	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.89	8	1	8	1	n	1.00	9	0	9	0	n	1.00	9	0	9	0	n	ENSMUSG00000028607.17	Cpt2	chr4	protein_coding	carnitine palmitoyltransferase 2
known_NIR_12718	chr4	107765284	107769838	-	107765422	107769838	A3SS	ENSMUST00000030345.15	known	0.00	0	139	0	139	n	0.00	0	108	0	108	n	0.02	6	254	6	254	y	0.05	12	250	12	250	y	0.00	0	240	0	240	n	0.00	0	167	0	167	n	0.04	11	288	11	288	y	0.01	1	171	1	171	n	0.00	0	142	0	142	n	0.03	8	308	8	308	y	0.04	9	207	9	207	y	0.03	9	250	9	250	y	ENSMUSG00000028607.17	Cpt2	chr4	protein_coding	carnitine palmitoyltransferase 2
known_NIR_12719	chr4	107765422	107769838	-	107761760	107769838	A3SS	ENSMUST00000106720.9	known	1.00	139	0	139	0	n	0.99	108	1	108	1	n	0.98	254	5	254	5	y	1.00	250	0	250	0	n	1.00	240	0	240	0	n	0.99	167	2	167	2	y	1.00	288	1	288	1	n	1.00	171	0	171	0	n	1.00	142	0	142	0	n	1.00	308	1	308	1	n	1.00	207	0	207	0	n	1.00	250	0	250	0	n	ENSMUSG00000028607.17	Cpt2	chr4	protein_coding	carnitine palmitoyltransferase 2
known_NIR_12720	chr4	107769944	107780512	-	107769944;107771541	107771461;107780512	ES	ENSMUST00000030345.15	known	0.00	0	191.5	0	165;218	n	0.01	2	173.0	2	149;197	y	0.00	0	341.0	0	295;387	n	0.00	0	323.0	0	269;377	n	0.00	1	309.0	1	284;334	n	0.00	0	244.5	0	206;283	n	0.00	0	333.5	0	300;367	n	0.00	1	223.5	1	188;259	n	0.00	0	214.5	0	189;240	n	0.00	1	396.0	1	342;450	n	0.00	0	239.5	0	215;264	n	0.01	2	271.0	2	244;298	y	ENSMUSG00000028607.17	Cpt2	chr4	protein_coding	carnitine palmitoyltransferase 2
known_NIR_12721	chr4	107904866	107921083	-	107904866;107912765	107912636;107921083	ES	ENSMUST00000030340.15	known	0.00	24	10452.5	24	11627;9278	y	0.00	12	10316.0	12	11920;8712	y	0.00	15	9038.0	15	10168;7908	y	0.00	19	12196.0	19	14013;10379	y	0.00	20	13327.0	20	15037;11617	y	0.00	11	6041.0	11	6898;5184	y	0.00	14	13591.0	14	15552;11630	y	0.00	9	6790.5	9	7699;5882	y	0.00	16	9789.0	16	11377;8201	y	0.00	17	17155.0	17	19919;14391	y	0.00	37	12279.5	37	14359;10200	y	0.00	20	14219.0	20	16401;12037	y	ENSMUSG00000028603.16	Scp2	chr4	protein_coding	sterol carrier protein 2, liver
known_NIR_12722	chr4	107959552	107964814	-	107959552;107962372	107962241;107964814	ES	ENSMUST00000030340.15	known	0.00	3	2769.0	3	2918;2620	y	0.00	6	1963.0	6	2094;1832	y	0.01	21	2375.5	21	2468;2283	y	0.00	10	4907.5	10	4998;4817	y	0.00	16	4549.0	16	4653;4445	y	0.00	4	1776.5	4	1803;1750	y	0.00	11	3706.5	11	3923;3490	y	0.00	4	1912.5	4	2022;1803	y	0.00	6	3706.5	6	3900;3513	y	0.00	19	6258.0	19	6546;5970	y	0.00	5	3550.0	5	3726;3374	y	0.00	15	5217.0	15	5483;4951	y	ENSMUSG00000028603.16	Scp2	chr4	protein_coding	sterol carrier protein 2, liver
known_NIR_12723	chr4	107959552	107964814	-	107962372	107964814	A3SS&ES	ENSMUST00000135379.8	known	0.00	3	2620	3	2620	y	0.00	6	1832	6	1832	y	0.01	21	2283	21	2283	y	0.00	10	4817	10	4817	y	0.00	16	4445	16	4445	y	0.00	4	1750	4	1750	y	0.00	11	3490	11	3490	y	0.00	4	1803	4	1803	y	0.00	6	3513	6	3513	y	0.00	19	5970	19	5970	y	0.00	5	3374	5	3374	y	0.00	15	4951	15	4951	y	ENSMUSG00000028603.16	Scp2	chr4	protein_coding	sterol carrier protein 2, liver
known_NIR_12724	chr4	107969481	108001589	-	107969481	107975576	5pMXE	ENSMUST00000030340.15	known	0.00	0	2879	0	2879	n	0.00	0	2054	0	2054	n	0.00	0	2611	0	2611	n	0.00	0	5562	0	5562	n	0.00	0	4992	0	4992	n	0.00	0	1949	0	1949	n	0.00	0	3671	0	3671	n	0.00	0	2234	0	2234	n	0.00	0	3873	0	3873	n	0.00	0	6300	0	6300	n	0.00	0	3521	0	3521	n	0.00	2	5430	2	5430	y	ENSMUSG00000028603.16	Scp2	chr4	protein_coding	sterol carrier protein 2, liver
known_NIR_12725	chr4	108022858	108027058	+	108022858;108026979	108026912;108027058	ES	ENSMUST00000052999.13	known	0.02	9	448.5	9	425;472	y	0.03	14	417.0	14	383;451	y	0.02	9	373.0	9	348;398	y	0.03	13	466.0	13	447;485	y	0.01	7	563.5	7	522;605	y	0.01	2	245.5	2	221;270	y	0.01	5	484.0	5	455;513	y	0.03	7	256.0	7	231;281	y	0.03	11	425.5	11	402;449	y	0.01	7	660.0	7	606;714	y	0.01	5	514.5	5	482;547	y	0.02	9	530.5	9	500;561	y	ENSMUSG00000028601.19	Echdc2	chr4	protein_coding	enoyl Coenzyme A hydratase domain containing 2
known_NIR_12726	chr4	108022858	108027058	+	108026979	108027058	5pMXE	ENSMUST00000135718.8	known	0.02	9	472	9	472	y	0.03	14	451	14	451	y	0.02	9	398	9	398	y	0.03	13	485	13	485	y	0.01	7	605	7	605	y	0.01	2	270	2	270	y	0.01	5	513	5	513	y	0.02	7	281	7	281	y	0.02	11	449	11	449	y	0.01	7	714	7	714	y	0.01	5	547	5	547	y	0.02	9	561	9	561	y	ENSMUSG00000028601.19	Echdc2	chr4	protein_coding	enoyl Coenzyme A hydratase domain containing 2
known_NIR_12727	chr4	108027145	108031184	+	108031048	108031184	A5SS&ES	ENSMUST00000130942.8	known	0.00	0	692	0	692	n	0.00	0	633	0	633	n	0.00	0	528	0	528	n	0.00	0	670	0	670	n	0.00	2	938	2	938	y	0.00	0	333	0	333	n	0.00	0	792	0	792	n	0.00	0	392	0	392	n	0.00	0	697	0	697	n	0.00	0	994	0	994	n	0.00	0	794	0	794	n	0.00	0	852	0	852	n	ENSMUSG00000028601.19	Echdc2	chr4	protein_coding	enoyl Coenzyme A hydratase domain containing 2
known_NIR_12728	chr4	108027423	108029286	+	108027145	108029286	A5SS	ENSMUST00000052999.13	known	0.62	393	242	393	242	y	0.61	363	235	363	235	y	0.45	191	237	191	237	y	0.58	358	260	358	260	y	0.63	491	284	491	284	y	0.55	177	144	177	144	y	0.65	506	267	506	267	y	0.63	230	134	230	134	y	0.65	395	217	395	217	y	0.55	482	394	482	394	y	0.59	427	293	427	293	y	0.64	460	254	460	254	y	ENSMUSG00000028601.19	Echdc2	chr4	protein_coding	enoyl Coenzyme A hydratase domain containing 2
known_NIR_12729	chr4	108029372	108029936	+	108029372	108030077	A3SS	ENSMUST00000052999.13	known	0.01	7	680	7	680	y	0.03	17	644	17	644	y	0.04	20	456	20	456	y	0.01	10	679	10	679	y	0.02	16	949	16	949	y	0.02	9	384	9	384	y	0.03	23	836	23	836	y	0.02	7	415	7	415	y	0.02	14	722	14	722	y	0.02	21	1004	21	1004	y	0.03	23	848	23	848	y	0.02	14	757	14	757	y	ENSMUSG00000028601.19	Echdc2	chr4	protein_coding	enoyl Coenzyme A hydratase domain containing 2
known_NIR_12730	chr4	108029372	108029948	+	108029372	108029936	A3SS	ENSMUST00000133049.9	known	0.22	2	7	2	7	n	0.26	6	17	6	17	y	0.20	5	20	5	20	y	0.23	3	10	3	10	y	0.20	4	16	4	16	y	0.18	2	9	2	9	y	0.28	9	23	9	23	y	0.36	4	7	4	7	y	0.22	4	14	4	14	y	0.19	5	21	5	21	y	0.18	5	23	5	23	y	0.12	2	14	2	14	y	ENSMUSG00000028601.19	Echdc2	chr4	protein_coding	enoyl Coenzyme A hydratase domain containing 2
known_NIR_12731	chr4	108029372	108029948	+	108029372	108030077	A3SS	ENSMUST00000052999.13	known	0.00	2	680	2	680	y	0.01	6	644	6	644	y	0.01	5	456	5	456	y	0.00	3	679	3	679	y	0.00	4	949	4	949	y	0.01	2	384	2	384	y	0.01	9	836	9	836	y	0.01	4	415	4	415	y	0.01	4	722	4	722	y	0.00	5	1004	5	1004	y	0.01	5	848	5	848	y	0.00	2	757	2	757	y	ENSMUSG00000028601.19	Echdc2	chr4	protein_coding	enoyl Coenzyme A hydratase domain containing 2
known_NIR_12732	chr4	108029372	108030992	+	108029372;108030169	108030077;108030992	ES	ENSMUST00000052999.13	known	0.00	0	723.5	0	680;767	n	0.01	4	679.0	4	644;714	y	0.00	0	509.0	0	456;562	n	0.00	3	717.5	3	679;756	y	0.00	5	1005.0	5	949;1061	y	0.02	7	389.5	7	384;395	y	0.00	2	869.5	2	836;903	y	0.00	2	419.5	2	415;424	y	0.01	4	756.5	4	722;791	y	0.00	5	1049.5	5	1004;1095	y	0.00	2	873.5	2	848;899	y	0.00	4	857.5	4	757;958	y	ENSMUSG00000028601.19	Echdc2	chr4	protein_coding	enoyl Coenzyme A hydratase domain containing 2
known_NIR_12733	chr4	108029372	108030992	+	108030169	108030992	5pMXE	ENSMUST00000150487.2	known	0.00	0	767	0	767	n	0.01	4	714	4	714	y	0.00	0	562	0	562	n	0.00	3	756	3	756	y	0.00	5	1061	5	1061	y	0.02	7	395	7	395	y	0.00	2	903	2	903	y	0.00	2	424	2	424	y	0.01	4	791	4	791	y	0.00	5	1095	5	1095	y	0.00	2	899	2	899	y	0.00	4	958	4	958	y	ENSMUSG00000028601.19	Echdc2	chr4	protein_coding	enoyl Coenzyme A hydratase domain containing 2
known_NIR_12734	chr4	108029372;108030169	108029936;108030992	+	108029372	108030992	cassetteExon	ENSMUST00000116307.8	known	1.00	387.0	0	7;767	0	n	0.99	365.5	4	17;714	4	y	1.00	291.0	0	20;562	0	n	0.99	383.0	3	10;756	3	y	0.99	538.5	5	16;1061	5	y	0.97	202.0	7	9;395	7	y	1.00	463.0	2	23;903	2	y	0.99	215.5	2	7;424	2	y	0.99	402.5	4	14;791	4	y	0.99	558.0	5	21;1095	5	y	1.00	461.0	2	23;899	2	y	0.99	486.0	4	14;958	4	y	ENSMUSG00000028601.19	Echdc2	chr4	protein_coding	enoyl Coenzyme A hydratase domain containing 2
known_NIR_12735	chr4	108029372;108030169	108029948;108030992	+	108029372	108030992	cassetteExon	ENSMUST00000116307.8	known	1.00	384.5	0	2;767	0	n	0.99	360.0	4	6;714	4	y	1.00	283.5	0	5;562	0	n	0.99	379.5	3	3;756	3	y	0.99	532.5	5	4;1061	5	y	0.97	198.5	7	2;395	7	y	1.00	456.0	2	9;903	2	y	0.99	214.0	2	4;424	2	y	0.99	397.5	4	4;791	4	y	0.99	550.0	5	5;1095	5	y	1.00	452.0	2	5;899	2	y	0.99	480.0	4	2;958	4	y	ENSMUSG00000028601.19	Echdc2	chr4	protein_coding	enoyl Coenzyme A hydratase domain containing 2
known_NIR_12736	chr4	108031371	108032456	+	108031371	108034270	A3SS	ENSMUST00000052999.13	known	0.06	35	556	35	556	y	0.05	34	602	34	602	y	0.04	19	434	19	434	y	0.07	41	565	41	565	y	0.05	44	776	44	776	y	0.03	10	299	10	299	y	0.05	41	720	41	720	y	0.08	28	322	28	322	y	0.05	29	579	29	579	y	0.04	36	860	36	860	y	0.05	35	711	35	711	y	0.04	30	767	30	767	y	ENSMUSG00000028601.19	Echdc2	chr4	protein_coding	enoyl Coenzyme A hydratase domain containing 2
known_NIR_12737	chr4	108034320	108036104	+	108034320;108035615	108035568;108036104	ES	ENSMUST00000052999.13	known	0.01	5	686.0	5	617;755	y	0.01	4	752.0	4	700;804	y	0.02	13	532.0	13	466;598	y	0.01	8	655.5	8	596;715	y	0.01	11	908.0	11	847;969	y	0.04	14	371.5	14	336;407	y	0.01	8	926.5	8	827;1026	y	0.02	8	375.0	8	334;416	y	0.01	4	631.5	4	565;698	y	0.01	10	1058.5	10	961;1156	y	0.01	6	831.5	6	764;899	y	0.01	5	858.5	5	782;935	y	ENSMUSG00000028601.19	Echdc2	chr4	protein_coding	enoyl Coenzyme A hydratase domain containing 2
known_NIR_12738	chr4	108405367	108406423	+	108405367	108406438	A3SS	ENSMUST00000043368.12	known	0.25	4	12	4	12	y	0.17	1	5	1	5	n	0.14	4	25	4	25	y	0.17	4	19	4	19	y	0.28	7	18	7	18	y	0.31	4	9	4	9	y	0.20	3	12	3	12	y	0.11	2	16	2	16	y	0.33	9	18	9	18	y	0.48	10	11	10	11	y	0.39	7	11	7	11	y	0.26	10	28	10	28	y	ENSMUSG00000034610.15	Tut4	chr4	protein_coding	terminal uridylyl transferase 4
known_NIR_12739	chr4	108414671	108415915	+	108414671	108415912	A3SS	ENSMUST00000043368.12	known	0.20	5	20	5	20	y	0.16	4	21	4	21	y	0.12	6	44	6	44	y	0.11	4	34	4	34	y	0.14	5	31	5	31	y	0.33	6	12	6	12	y	0.11	4	31	4	31	y	0.11	3	24	3	24	y	0.18	5	23	5	23	y	0.09	4	41	4	41	y	0.28	12	31	12	31	y	0.12	7	53	7	53	y	ENSMUSG00000034610.15	Tut4	chr4	protein_coding	terminal uridylyl transferase 4
known_NIR_12740	chr4	108548988;108550693	108550517;108552966	-	108548988	108552966	cassetteExon	ENSMUST00000106658.8	known	1.00	22.5	0	18;27	0	n	1.00	14.5	0	20;9	0	n	1.00	29.0	0	30;28	0	n	1.00	27.0	0	28;26	0	n	0.95	36.5	2	42;31	2	y	1.00	17.5	0	22;13	0	n	1.00	30.0	0	33;27	0	n	1.00	12.5	0	12;13	0	n	0.79	15.0	4	13;17	4	y	1.00	33.0	0	38;28	0	n	1.00	22.0	0	26;18	0	n	1.00	41.5	0	36;47	0	n	ENSMUSG00000034557.15	Zfyve9	chr4	protein_coding	zinc finger, FYVE domain containing 9
known_NIR_12741	chr4	108687780	108688903	-	108687780	108689610	A5SS	ENSMUST00000102740.8	known	0.50	1	1	1	1	n	0.25	3	9	3	9	y	0.20	2	8	2	8	y	0.17	1	5	1	5	n	0.33	3	6	3	6	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.25	1	3	1	3	n	0.67	2	1	2	1	n	0.40	2	3	2	3	n	0.64	7	4	7	4	y	0.50	3	3	3	3	n	ENSMUSG00000028568.17	Btf3l4	chr4	protein_coding	basic transcription factor 3-like 4
known_NIR_12742	chr4	108687780	108688903	-	108687780	108690340	A5SS	ENSMUST00000102741.8	known	0.07	1	13	1	13	n	0.38	3	5	3	5	n	0.07	2	27	2	27	y	0.17	1	5	1	5	n	0.12	3	21	3	21	y	0.00	0	20	0	20	n	0.08	1	12	1	12	n	0.11	1	8	1	8	n	0.14	2	12	2	12	y	0.18	2	9	2	9	y	0.25	7	21	7	21	y	0.11	3	25	3	25	y	ENSMUSG00000028568.17	Btf3l4	chr4	protein_coding	basic transcription factor 3-like 4
known_NIR_12743	chr4	108687780	108688903	-	108687780	108690705	A5SS	ENSMUST00000102742.11	known	0.01	1	94	1	94	n	0.03	3	94	3	94	y	0.01	2	155	2	155	y	0.01	1	109	1	109	n	0.02	3	139	3	139	y	0.00	0	88	0	88	n	0.01	1	121	1	121	n	0.01	1	88	1	88	n	0.02	2	122	2	122	y	0.02	2	122	2	122	y	0.05	7	132	7	132	y	0.02	3	136	3	136	y	ENSMUSG00000028568.17	Btf3l4	chr4	protein_coding	basic transcription factor 3-like 4
known_NIR_12744	chr4	108687780	108689610	-	108687780	108690340	A5SS	ENSMUST00000102741.8	known	0.07	1	13	1	13	n	0.64	9	5	9	5	y	0.23	8	27	8	27	y	0.50	5	5	5	5	y	0.22	6	21	6	21	y	0.17	4	20	4	20	y	0.33	6	12	6	12	y	0.27	3	8	3	8	y	0.08	1	12	1	12	n	0.25	3	9	3	9	y	0.16	4	21	4	21	y	0.11	3	25	3	25	y	ENSMUSG00000028568.17	Btf3l4	chr4	protein_coding	basic transcription factor 3-like 4
known_NIR_12745	chr4	108687780	108690340	-	108687780	108690705	A5SS	ENSMUST00000102742.11	known	0.12	13	94	13	94	y	0.05	5	94	5	94	y	0.15	27	155	27	155	y	0.04	5	109	5	109	y	0.13	21	139	21	139	y	0.19	20	88	20	88	y	0.09	12	121	12	121	y	0.08	8	88	8	88	y	0.09	12	122	12	122	y	0.07	9	122	9	122	y	0.14	21	132	21	132	y	0.16	25	136	25	136	y	ENSMUSG00000028568.17	Btf3l4	chr4	protein_coding	basic transcription factor 3-like 4
known_NIR_12746	chr4	108687780;108689648	108689610;108690705	-	108687780	108690705	cassetteExon	ENSMUST00000102742.11	known	0.01	0.5	94	1;0	94	n	0.08	8.5	94	9;8	94	y	0.05	7.5	155	8;7	155	y	0.04	4.0	109	5;3	109	y	0.04	6.0	139	6;6	139	y	0.05	4.5	88	4;5	88	y	0.05	6.5	121	6;7	121	y	0.03	3.0	88	3;3	88	y	0.01	1.0	122	1;1	122	n	0.03	3.5	122	3;4	122	y	0.03	4.0	132	4;4	132	y	0.01	1.5	136	3;0	136	n	ENSMUSG00000028568.17	Btf3l4	chr4	protein_coding	basic transcription factor 3-like 4
known_NIR_12747	chr4	108871037	108873849	+	108871037	108875036	A3SS	ENSMUST00000065977.11	known	0.04	2	51	2	51	y	0.14	5	31	5	31	y	0.15	25	145	25	145	y	0.04	4	88	4	88	y	0.04	5	118	5	118	y	0.13	12	80	12	80	y	0.11	13	109	13	109	y	0.14	13	78	13	78	y	0.08	5	58	5	58	y	0.06	7	106	7	106	y	0.05	3	63	3	63	y	0.04	4	101	4	101	y	ENSMUSG00000053510.13	Nrd1	chr4	protein_coding	nardilysin, N-arginine dibasic convertase, NRD convertase 1
known_NIR_12748	chr4	108874893	108875036	+	108871037	108875036	A5SS	ENSMUST00000065977.11	known	0.11	6	51	6	51	y	0.23	9	31	9	31	y	0.13	21	145	21	145	y	0.10	10	88	10	88	y	0.14	19	118	19	118	y	0.04	3	80	3	80	y	0.14	18	109	18	109	y	0.12	11	78	11	78	y	0.18	13	58	13	58	y	0.12	14	106	14	106	y	0.05	3	63	3	63	y	0.08	9	101	9	101	y	ENSMUSG00000053510.13	Nrd1	chr4	protein_coding	nardilysin, N-arginine dibasic convertase, NRD convertase 1
known_NIR_12749	chr4	108886070	108889647	+	108886070	108891878	A3SS	ENSMUST00000102736.9	known	1.00	61	0	61	0	n	1.00	43	0	43	0	n	1.00	118	0	118	0	n	1.00	90	0	90	0	n	1.00	127	0	127	0	n	0.97	84	3	84	3	y	1.00	97	0	97	0	n	1.00	53	0	53	0	n	1.00	79	0	79	0	n	1.00	98	0	98	0	n	1.00	62	0	62	0	n	1.00	115	0	115	0	n	ENSMUSG00000053510.13	Nrd1	chr4	protein_coding	nardilysin, N-arginine dibasic convertase, NRD convertase 1
known_NIR_12750	chr4	108890560	108891878	+	108886070	108891878	A5SS	ENSMUST00000102736.9	known	1.00	68	0	68	0	n	1.00	53	0	53	0	n	1.00	131	0	131	0	n	1.00	92	0	92	0	n	1.00	136	0	136	0	n	0.96	77	3	77	3	y	1.00	122	0	122	0	n	1.00	89	0	89	0	n	1.00	76	0	76	0	n	1.00	115	0	115	0	n	1.00	68	0	68	0	n	1.00	133	0	133	0	n	ENSMUSG00000053510.13	Nrd1	chr4	protein_coding	nardilysin, N-arginine dibasic convertase, NRD convertase 1
known_NIR_12751	chr4	108903878	108906264	+	108903878;108904913	108904794;108906264	ES	ENSMUST00000065977.11	known	0.02	2	113.5	2	110;117	y	0.00	0	81.5	0	69;94	n	0.00	0	186.5	0	188;185	n	0.00	0	102.5	0	102;103	n	0.00	0	181.5	0	170;193	n	0.00	0	111.0	0	124;98	n	0.02	3	134.0	3	131;137	y	0.00	0	103.0	0	110;96	n	0.01	1	104.0	1	106;102	n	0.01	2	140.5	2	141;140	y	0.01	1	90.0	1	84;96	n	0.00	0	178.0	0	196;160	n	ENSMUSG00000053510.13	Nrd1	chr4	protein_coding	nardilysin, N-arginine dibasic convertase, NRD convertase 1
known_NIR_12752	chr4	108930346	108940286	-	108930346	108955700	A5SS	ENSMUST00000126288.8	known	0.99	310	4	310	4	y	1.00	246	0	246	0	n	0.98	328	6	328	6	y	0.99	448	3	448	3	y	0.99	417	4	417	4	y	0.99	193	1	193	1	n	1.00	410	1	410	1	n	1.00	240	0	240	0	n	0.99	273	3	273	3	y	0.99	550	5	550	5	y	0.99	322	4	322	4	y	0.98	457	7	457	7	y	ENSMUSG00000028559.18	Osbpl9	chr4	protein_coding	oxysterol binding protein-like 9
known_NIR_12753	chr4	108944682	108955700	-	108930346	108955700	A3SS	ENSMUST00000126288.8	known	0.76	13	4	13	4	y	1.00	24	0	24	0	n	0.90	57	6	57	6	y	0.90	26	3	26	3	y	0.92	48	4	48	4	y	0.96	27	1	27	1	n	0.97	33	1	33	1	n	1.00	36	0	36	0	n	0.91	29	3	29	3	y	0.88	38	5	38	5	y	0.83	19	4	19	4	y	0.85	40	7	40	7	y	ENSMUSG00000028559.18	Osbpl9	chr4	protein_coding	oxysterol binding protein-like 9
known_NIR_12754	chr4	108944682	108955700	-	108944682;108948896	108948858;108955700	ES	ENSMUST00000084366.13	known	0.07	13	170.0	13	162;178	y	0.12	24	182.0	24	183;181	y	0.24	57	185.5	57	183;188	y	0.09	26	270.0	26	253;287	y	0.12	48	346.0	48	333;359	y	0.22	27	97.5	27	95;100	y	0.11	33	274.0	33	258;290	y	0.22	36	130.0	36	129;131	y	0.13	29	200.5	29	187;214	y	0.10	38	344.0	38	329;359	y	0.09	19	185.5	19	176;195	y	0.12	40	295.5	40	281;310	y	ENSMUSG00000028559.18	Osbpl9	chr4	protein_coding	oxysterol binding protein-like 9
known_NIR_12755	chr4	108948896	108955700	-	108930346	108955700	A3SS	ENSMUST00000126288.8	known	0.98	178	4	178	4	y	1.00	181	0	181	0	n	0.97	188	6	188	6	y	0.99	287	3	287	3	y	0.99	359	4	359	4	y	0.99	100	1	100	1	n	1.00	290	1	290	1	n	1.00	131	0	131	0	n	0.99	214	3	214	3	y	0.99	359	5	359	5	y	0.98	195	4	195	4	y	0.98	310	7	310	7	y	ENSMUSG00000028559.18	Osbpl9	chr4	protein_coding	oxysterol binding protein-like 9
known_NIR_12756	chr4	108959789	108965078	-	108959789	108975092	A5SS	ENSMUST00000084366.13	known	0.01	1	99	1	99	n	0.02	2	90	2	90	y	0.00	0	123	0	123	n	0.01	2	183	2	183	y	0.02	3	192	3	192	y	0.00	0	73	0	73	n	0.09	14	136	14	136	y	0.01	1	102	1	102	n	0.01	1	109	1	109	n	0.01	1	146	1	146	n	0.00	0	88	0	88	n	0.01	2	143	2	143	y	ENSMUSG00000028559.18	Osbpl9	chr4	protein_coding	oxysterol binding protein-like 9
known_NIR_12757	chr4	108959789	108990941	-	108959789	108965078	5pMXE	ENSMUST00000153714.8	known	0.97	28	1	28	1	n	0.85	11	2	11	2	y	1.00	12	0	12	0	n	0.95	42	2	42	2	y	0.89	25	3	25	3	y	1.00	8	0	8	0	n	0.67	29	14	29	14	y	0.95	19	1	19	1	n	0.96	25	1	25	1	n	0.98	44	1	44	1	n	1.00	39	0	39	0	n	0.95	40	2	40	2	y	ENSMUSG00000028559.18	Osbpl9	chr4	protein_coding	oxysterol binding protein-like 9
known_NIR_12758	chr4	108959789	108990941	-	108959789	108975092	5pMXE	ENSMUST00000084366.13	known	0.22	28	99	28	99	y	0.11	11	90	11	90	y	0.09	12	123	12	123	y	0.19	42	183	42	183	y	0.12	25	192	25	192	y	0.10	8	73	8	73	y	0.18	29	136	29	136	y	0.16	19	102	19	102	y	0.19	25	109	25	109	y	0.23	44	146	44	146	y	0.31	39	88	39	88	y	0.22	40	143	40	143	y	ENSMUSG00000028559.18	Osbpl9	chr4	protein_coding	oxysterol binding protein-like 9
known_NIR_12759	chr4	108959789	108990941	-	108959789;108965146	108965078;108990941	ES	ENSMUST00000194478.6	known	0.97	28	1.0	28	1;1	n	0.88	11	1.5	11	2;1	n	1.00	12	0.0	12	0;0	n	0.97	42	1.5	42	2;1	n	0.94	25	1.5	25	3;0	n	1.00	8	0.0	8	0;0	n	0.72	29	11.0	29	14;8	y	0.97	19	0.5	19	1;0	n	0.98	25	0.5	25	1;0	n	0.97	44	1.5	44	1;2	n	0.99	39	0.5	39	0;1	n	0.98	40	1.0	40	2;0	n	ENSMUSG00000028559.18	Osbpl9	chr4	protein_coding	oxysterol binding protein-like 9
known_NIR_12760	chr4	108991017	109029471	-	108991017	109013852	5pMXE	ENSMUST00000161602.8	known	0.06	1	15	1	15	n	0.17	1	5	1	5	n	0.05	1	19	1	19	n	0.00	0	8	0	8	n	0.09	2	21	2	21	y	0.00	0	8	0	8	n	0.05	1	19	1	19	n	0.00	0	16	0	16	n	0.25	2	6	2	6	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	ENSMUSG00000028559.18	Osbpl9	chr4	protein_coding	oxysterol binding protein-like 9
known_NIR_12761	chr4	108991017	109029471	-	108991017;109013930	109013852;109029471	ES	ENSMUST00000194478.6	known	0.09	1	10.5	1	15;6	n	0.17	1	5.0	1	5;5	n	0.05	1	19.5	1	19;20	n	0.00	0	11.0	0	8;14	n	0.09	2	21.5	2	21;22	y	0.00	0	7.5	0	8;7	n	0.06	1	16.0	1	19;13	n	0.00	0	12.5	0	16;9	n	0.19	2	8.5	2	6;11	y	0.00	0	14.0	0	15;13	n	0.00	0	8.5	0	6;11	n	0.00	0	15.0	0	13;17	n	ENSMUSG00000028559.18	Osbpl9	chr4	protein_coding	oxysterol binding protein-like 9
known_NIR_12762	chr4	108991017;109029521	109029471;109059302	-	108991017;109013930	109013852;109059302	MXE	ENSMUST00000160774.8	known	0.38	4.5	7.5	1;8	15;0	n	0.64	4.5	2.5	1;8	5;0	n	0.55	12.0	10.0	1;23	19;1	n	0.62	6.5	4.0	0;13	8;0	n	0.57	15.5	11.5	2;29	21;2	y	0.47	3.5	4.0	0;7	8;0	n	0.42	7.0	9.5	1;13	19;0	n	0.47	7.5	8.5	0;15	16;1	n	0.76	9.5	3.0	2;17	6;0	n	0.50	8.0	8.0	0;16	15;1	n	0.65	5.5	3.0	0;11	6;0	n	0.52	7.5	7.0	0;15	13;1	n	ENSMUSG00000028559.18	Osbpl9	chr4	protein_coding	oxysterol binding protein-like 9
known_NIR_12763	chr4	109013930	109059302	-	109013930;109029521	109029471;109059302	ES	ENSMUST00000194478.6	known	0.00	0	7.0	0	6;8	n	0.00	0	6.5	0	5;8	n	0.04	1	21.5	1	20;23	n	0.00	0	13.5	0	14;13	n	0.07	2	25.5	2	22;29	y	0.00	0	7.0	0	7;7	n	0.00	0	13.0	0	13;13	n	0.08	1	12.0	1	9;15	n	0.00	0	14.0	0	11;17	n	0.06	1	14.5	1	13;16	n	0.00	0	11.0	0	11;11	n	0.06	1	16.0	1	17;15	n	ENSMUSG00000028559.18	Osbpl9	chr4	protein_coding	oxysterol binding protein-like 9
known_NIR_12764	chr4	109013930	109059302	-	109029521	109059302	3pMXE	ENSMUST00000159758.2	known	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.04	1	23	1	23	n	0.00	0	13	0	13	n	0.06	2	29	2	29	y	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.06	1	15	1	15	n	0.00	0	17	0	17	n	0.06	1	16	1	16	n	0.00	0	11	0	11	n	0.06	1	15	1	15	n	ENSMUSG00000028559.18	Osbpl9	chr4	protein_coding	oxysterol binding protein-like 9
known_NIR_12765	chr4	109162921	109169501	+	109162921;109166417	109166322;109169501	ES	ENSMUST00000102729.10	known	0.00	0	35.0	0	32;38	n	0.04	1	23.0	1	20;26	n	0.03	3	102.0	3	93;111	y	0.00	0	62.0	0	59;65	n	0.01	1	79.0	1	76;82	n	0.02	1	39.5	1	34;45	n	0.02	1	61.5	1	61;62	n	0.09	4	38.5	4	43;34	y	0.07	2	25.5	2	21;30	y	0.03	2	69.0	2	61;77	y	0.03	1	29.5	1	24;35	n	0.04	3	71.0	3	55;87	y	ENSMUSG00000028552.14	Eps15	chr4	protein_coding	epidermal growth factor receptor pathway substrate 15
known_NIR_12766	chr4	109162921	109169501	+	109166417	109169501	5pMXE	ENSMUST00000141751.2	known	0.00	0	38	0	38	n	0.04	1	26	1	26	n	0.03	3	111	3	111	y	0.00	0	65	0	65	n	0.01	1	82	1	82	n	0.02	1	45	1	45	n	0.02	1	62	1	62	n	0.11	4	34	4	34	y	0.06	2	30	2	30	y	0.03	2	77	2	77	y	0.03	1	35	1	35	n	0.03	3	87	3	87	y	ENSMUSG00000028552.14	Eps15	chr4	protein_coding	epidermal growth factor receptor pathway substrate 15
known_NIR_12767	chr4	109178522	109179267	+	109178414	109179267	A5SS	ENSMUST00000102729.10	known	0.00	0	35	0	35	n	0.04	1	27	1	27	n	0.08	6	70	6	70	y	0.06	3	45	3	45	y	0.18	16	75	16	75	y	0.17	9	44	9	44	y	0.06	4	63	4	63	y	0.07	2	27	2	27	y	0.06	2	34	2	34	y	0.11	6	49	6	49	y	0.10	3	27	3	27	y	0.07	4	57	4	57	y	ENSMUSG00000028552.14	Eps15	chr4	protein_coding	epidermal growth factor receptor pathway substrate 15
known_NIR_12768	chr4	109237226	109240044	+	109237226	109239982	A3SS	ENSMUST00000102729.10	known	0.00	0	73	0	73	n	0.00	0	57	0	57	n	0.02	2	116	2	116	y	0.04	3	65	3	65	y	0.02	2	104	2	104	y	0.00	0	73	0	73	n	0.00	0	90	0	90	n	0.04	2	48	2	48	y	0.00	0	64	0	64	n	0.00	0	86	0	86	n	0.02	2	86	2	86	y	0.01	1	103	1	103	n	ENSMUSG00000028552.14	Eps15	chr4	protein_coding	epidermal growth factor receptor pathway substrate 15
known_NIR_12769	chr4	109237226	109242516	+	109237226;109240163	109239982;109242516	ES	ENSMUST00000102729.10	known	0.27	27	73.0	27	73;73	y	0.29	25	61.5	25	57;66	y	0.15	20	111.5	20	116;107	y	0.12	10	72.5	10	65;80	y	0.24	33	106.0	33	104;108	y	0.20	15	59.0	15	73;45	y	0.28	33	83.0	33	90;76	y	0.20	12	48.5	12	48;49	y	0.26	21	60.0	21	64;56	y	0.22	24	83.5	24	86;81	y	0.24	23	74.0	23	86;62	y	0.20	25	101.0	25	103;99	y	ENSMUSG00000028552.14	Eps15	chr4	protein_coding	epidermal growth factor receptor pathway substrate 15
known_NIR_12770	chr4	109237226	109242516	+	109237226;109240163	109240044;109242516	ES	ENSMUST00000176251.8	known	0.43	27	36.5	27	0;73	n	0.43	25	33.0	25	0;66	n	0.27	20	54.5	20	2;107	y	0.19	10	41.5	10	3;80	y	0.38	33	55.0	33	2;108	y	0.40	15	22.5	15	0;45	n	0.46	33	38.0	33	0;76	n	0.32	12	25.5	12	2;49	y	0.43	21	28.0	21	0;56	n	0.37	24	40.5	24	0;81	n	0.42	23	32.0	23	2;62	y	0.33	25	50.0	25	1;99	n	ENSMUSG00000028552.14	Eps15	chr4	protein_coding	epidermal growth factor receptor pathway substrate 15
known_NIR_12771	chr4	109510022	109510136	-	109509843	109510136	A3SS	ENSMUST00000131216.8	known	0.93	42	3	42	3	y	1.00	24	0	24	0	n	1.00	8	0	8	0	n	0.93	27	2	27	2	y	0.95	41	2	41	2	y	1.00	8	0	8	0	n	0.96	26	1	26	1	n	1.00	13	0	13	0	n	0.95	35	2	35	2	y	0.95	40	2	40	2	y	1.00	48	0	48	0	n	0.90	28	3	28	3	y	ENSMUSG00000059027.15	9630013D21Rik	chr4	lncRNA	RIKEN cDNA 9630013D21 gene
known_NIR_12772	chr4	11051225	11059012	-	11051225;11053488	11053432;11059012	ES	ENSMUST00000058183.9	known	0.11	9	71.5	9	77;66	y	0.13	7	45.0	7	45;45	y	0.03	1	30.5	1	24;37	n	0.15	7	38.5	7	36;41	y	0.20	11	44.5	11	48;41	y	0.13	3	19.5	3	21;18	y	0.09	7	68.0	7	68;68	y	0.00	0	16.0	0	13;19	n	0.09	5	52.0	5	50;54	y	0.10	10	93.0	10	109;77	y	0.09	7	71.0	7	68;74	y	0.10	7	65.5	7	66;65	y	ENSMUSG00000050323.15	Ndufaf6	chr4	protein_coding	NADH:ubiquinone oxidoreductase complex assembly factor 6
known_NIR_12773	chr4	11062152	11070200	-	11062152;11066707	11066651;11070200	ES	ENSMUST00000058183.9	known	0.38	22	36.5	22	36;37	y	0.25	14	41.0	14	44;38	y	0.38	9	15.0	9	17;13	y	0.25	18	54.5	18	47;62	y	0.27	18	49.5	18	43;56	y	0.39	7	11.0	7	12;10	y	0.35	25	46.5	25	51;42	y	0.24	5	16.0	5	18;14	y	0.48	22	24.0	22	25;23	y	0.37	29	50.0	29	52;48	y	0.35	24	44.5	24	53;36	y	0.28	22	55.5	22	60;51	y	ENSMUSG00000050323.15	Ndufaf6	chr4	protein_coding	NADH:ubiquinone oxidoreductase complex assembly factor 6
known_NIR_12774	chr4	11070322	11073140	-	11070322	11073144	A5SS	ENSMUST00000058183.9	known	0.12	7	49	7	49	y	0.19	6	26	6	26	y	0.24	5	16	5	16	y	0.25	15	46	15	46	y	0.15	7	41	7	41	y	0.00	0	16	0	16	n	0.17	7	33	7	33	y	0.08	1	12	1	12	n	0.09	3	32	3	32	y	0.12	8	57	8	57	y	0.10	4	36	4	36	y	0.19	12	52	12	52	y	ENSMUSG00000050323.15	Ndufaf6	chr4	protein_coding	NADH:ubiquinone oxidoreductase complex assembly factor 6
known_NIR_12775	chr4	11070322	11073187	-	11070322	11073140	A5SS	ENSMUST00000126468.8	known	0.42	5	7	5	7	y	0.45	5	6	5	6	y	0.17	1	5	1	5	n	0.21	4	15	4	15	y	0.42	5	7	5	7	y	-	-	-	-	-	-	0.50	7	7	7	7	y	0.67	2	1	2	1	n	0.62	5	3	5	3	n	0.27	3	8	3	8	y	0.64	7	4	7	4	y	0.29	5	12	5	12	y	ENSMUSG00000050323.15	Ndufaf6	chr4	protein_coding	NADH:ubiquinone oxidoreductase complex assembly factor 6
known_NIR_12776	chr4	11070322	11073187	-	11070322	11073144	A5SS	ENSMUST00000058183.9	known	0.09	5	49	5	49	y	0.16	5	26	5	26	y	0.06	1	16	1	16	n	0.08	4	46	4	46	y	0.11	5	41	5	41	y	0.00	0	16	0	16	n	0.17	7	33	7	33	y	0.14	2	12	2	12	y	0.14	5	32	5	32	y	0.05	3	57	3	57	y	0.16	7	36	7	36	y	0.09	5	52	5	52	y	ENSMUSG00000050323.15	Ndufaf6	chr4	protein_coding	NADH:ubiquinone oxidoreductase complex assembly factor 6
known_NIR_12777	chr4	11165447	11169710	+	11165447	11167897	3pMXE	ENSMUST00000132346.2	known	0.19	5	22	5	22	y	0.35	7	13	7	13	y	0.45	86	107	86	107	y	0.33	16	33	16	33	y	0.28	12	31	12	31	y	0.43	23	31	23	31	y	0.32	10	21	10	21	y	0.46	22	26	22	26	y	0.26	7	20	7	20	y	0.45	29	36	29	36	y	0.26	9	26	9	26	y	0.41	26	38	26	38	y	ENSMUSG00000028211.12	Trp53inp1	chr4	protein_coding	transformation related protein 53 inducible nuclear protein 1
known_NIR_12778	chr4	11165447;11167934	11167897;11169710	+	11165447	11169710	cassetteExon	ENSMUST00000029865.4	known	0.83	25.0	5	22;28	5	y	0.63	12.0	7	13;11	7	y	0.56	108.5	86	107;110	86	y	0.70	37.5	16	33;42	16	y	0.70	28.5	12	31;26	12	y	0.59	33.5	23	31;36	23	y	0.69	22.0	10	21;23	10	y	0.56	27.5	22	26;29	22	y	0.75	21.0	7	20;22	7	y	0.59	41.5	29	36;47	29	y	0.76	28.5	9	26;31	9	y	0.61	41.5	26	38;45	26	y	ENSMUSG00000028211.12	Trp53inp1	chr4	protein_coding	transformation related protein 53 inducible nuclear protein 1
known_NIR_12779	chr4	11211932;11212931	11212792;11213706	-	11211932	11213706	cassetteExon	ENSMUST00000044616.10	known	0.05	2.5	52	3;2	52	y	0.02	0.5	28	0;1	28	n	0.03	1.0	36	2;0	36	n	0.01	0.5	33	1;0	33	n	0.06	3.0	47	5;1	47	n	0.00	0.0	13	0;0	13	n	0.07	2.5	33	3;2	33	y	0.19	3.0	13	3;3	13	y	0.04	1.5	33	2;1	33	n	0.01	0.5	52	1;0	52	n	0.04	1.5	35	2;1	35	n	0.04	2.0	54	0;4	54	n	ENSMUSG00000040738.11	Ints8	chr4	protein_coding	integrator complex subunit 8
known_NIR_12780	chr4	11290289	11292554	-	11290289;11290522	11290391;11292554	ES	ENSMUST00000139385.8	known	0.08	1	11.0	1	11;11	n	0.33	1	2.0	1	2;2	n	0.32	3	6.5	3	10;3	y	0.09	1	10.5	1	12;9	n	0.07	1	12.5	1	9;16	n	0.00	0	6.5	0	9;4	n	0.00	0	11.5	0	8;15	n	0.00	0	7.5	0	7;8	n	0.00	0	4.0	0	4;4	n	0.00	0	7.0	0	9;5	n	0.29	2	5.0	2	7;3	y	0.00	0	8.0	0	6;10	n	ENSMUSG00000045205.17	Dpy19l4	chr4	protein_coding	dpy-19-like 4 (C. elegans)
known_NIR_12781	chr4	114826561;114828555	114828489;114844163	-	114826561	114844163	cassetteExon	ENSMUST00000030491.9	known	0.01	2.0	208	3;1	208	n	0.03	4.5	153	6;3	153	y	0.03	8.5	320	12;5	320	y	0.02	5.5	257	8;3	257	y	0.02	5.0	265	7;3	265	y	0.00	0.0	171	0;0	171	n	0.01	3.0	278	3;3	278	y	0.00	0.5	164	1;0	164	n	0.01	1.0	174	1;1	174	n	0.02	7.0	292	7;7	292	y	0.01	2.0	182	2;2	182	y	0.03	8.5	270	15;2	270	y	ENSMUSG00000028719.9	Cmpk1	chr4	protein_coding	cytidine monophosphate (UMP-CMP) kinase 1
known_NIR_12782	chr4	114842158	114844163	-	114826561	114844163	A3SS	ENSMUST00000030491.9	known	0.01	3	208	3	208	y	0.00	0	153	0	153	n	0.00	0	320	0	320	n	0.00	1	257	1	257	n	0.00	0	265	0	265	n	0.01	1	171	1	171	n	0.00	0	278	0	278	n	0.02	4	164	4	164	y	0.00	0	174	0	174	n	0.00	0	292	0	292	n	0.00	0	182	0	182	n	0.01	2	270	2	270	y	ENSMUSG00000028719.9	Cmpk1	chr4	protein_coding	cytidine monophosphate (UMP-CMP) kinase 1
known_NIR_12783	chr4	115377463	115378265	+	115377493	115378265	A5SS	ENSMUST00000058785.10	known	0.01	3	206	3	206	y	0.02	3	193	3	193	y	0.00	0	27	0	27	n	0.02	4	231	4	231	y	0.01	2	367	2	367	y	0.00	0	27	0	27	n	0.01	5	658	5	658	y	0.00	0	40	0	40	n	0.04	8	190	8	190	y	0.02	10	623	10	623	y	0.01	2	313	2	313	y	0.00	1	237	1	237	n	ENSMUSG00000066072.14	Cyp4a10	chr4	protein_coding	cytochrome P450, family 4, subfamily a, polypeptide 10
known_NIR_12784	chr4	115421102	115422210	+	115421102	115422207	A3SS	ENSMUST00000141033.8	known	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.10	2	18	2	18	y	0.06	2	34	2	34	y	0.00	0	93	0	93	n	0.00	0	5	0	5	n	0.00	0	100	0	100	n	0.00	0	26	0	26	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	ENSMUSG00000028712.13	Cyp4a31	chr4	protein_coding	cytochrome P450, family 4, subfamily a, polypeptide 31
known_NIR_12785	chr4	115422351	115423677	+	115422351;115422912	115422868;115423677	ES	ENSMUST00000141033.8	known	0.00	0	20.5	0	20;21	n	0.00	0	24.5	0	19;30	n	0.00	0	11.0	0	11;11	n	0.00	0	49.0	0	49;49	n	0.00	0	100.0	0	90;110	n	0.00	0	10.0	0	8;12	n	0.01	1	153.5	1	143;164	n	0.08	2	23.5	2	21;26	y	0.00	0	30.5	0	27;34	n	0.00	0	88.0	0	88;88	n	0.00	0	45.0	0	44;46	n	0.00	0	22.5	0	23;22	n	ENSMUSG00000028712.13	Cyp4a31	chr4	protein_coding	cytochrome P450, family 4, subfamily a, polypeptide 31
known_NIR_12786	chr4	115431961	115432104	+	115431961	115432087	A3SS	ENSMUST00000030486.15	known	0.82	9	2	9	2	y	0.84	16	3	16	3	y	0.75	9	3	9	3	y	0.80	20	5	20	5	y	0.93	79	6	79	6	y	0.88	15	2	15	2	y	0.96	120	5	120	5	y	0.75	12	4	12	4	y	0.75	6	2	6	2	n	0.78	21	6	21	6	y	0.68	13	6	13	6	y	0.71	5	2	5	2	n	ENSMUSG00000028712.13	Cyp4a31	chr4	protein_coding	cytochrome P450, family 4, subfamily a, polypeptide 31
known_NIR_12787	chr4	115458360;115459601	115459457;115460125	+	115458360	115460125	cassetteExon	ENSMUST00000129918.2	known	1.00	31.5	0	40;23	0	n	0.86	25.5	4	32;19	4	y	0.87	54.5	8	62;47	8	y	1.00	49.0	0	61;37	0	n	0.93	83.5	6	92;75	6	y	0.89	25.5	3	32;19	3	y	0.84	58.5	11	71;46	11	y	0.96	45.0	2	53;37	2	y	0.93	37.0	3	39;35	3	y	0.81	56.0	13	65;47	13	y	0.95	38.0	2	44;32	2	y	1.00	37.0	0	44;30	0	n	ENSMUSG00000063929.7	Cyp4a32	chr4	protein_coding	cytochrome P450, family 4, subfamily a, polypeptide 32
known_NIR_12788	chr4	115460169;115463969	115463842;115466824	+	115460169	115466824	cassetteExon	ENSMUST00000129918.2	known	0.95	35.0	2	13;57	2	y	0.90	45.5	5	24;67	5	y	0.89	58.5	7	43;74	7	y	0.88	43.5	6	32;55	6	y	0.88	84.5	12	59;110	12	y	0.83	24.5	5	10;39	5	y	0.79	76.5	20	24;129	20	y	0.85	39.5	7	23;56	7	y	0.78	39.5	11	24;55	11	y	0.93	79.5	6	28;131	6	y	0.91	51.5	5	21;82	5	y	0.94	33.0	2	14;52	2	y	ENSMUSG00000063929.7	Cyp4a32	chr4	protein_coding	cytochrome P450, family 4, subfamily a, polypeptide 32
known_NIR_12789	chr4	115484137	115485866	-	115484137	115485533	A5SS&ES	ENSMUST00000135569.8	known	0.94	16	1	16	1	n	1.00	30	0	30	0	n	1.00	23	0	23	0	n	1.00	22	0	22	0	n	0.98	40	1	40	1	n	1.00	16	0	16	0	n	0.97	31	1	31	1	n	1.00	10	0	10	0	n	0.95	18	1	18	1	n	0.90	18	2	18	2	y	0.92	23	2	23	2	y	0.86	25	4	25	4	y	ENSMUSG00000028713.18	Cyp4b1	chr4	protein_coding	cytochrome P450, family 4, subfamily b, polypeptide 1
known_NIR_12790	chr4	115616092	115619415	+	115616092;115617258	115617067;115619415	ES	ENSMUST00000106525.9	known	0.00	0	27.5	0	21;34	n	0.00	0	15.5	0	12;19	n	0.05	2	36.5	2	42;31	y	0.00	0	30.5	0	36;25	n	0.10	4	34.5	4	29;40	y	0.00	0	24.0	0	19;29	n	0.00	0	33.5	0	29;38	n	0.09	2	21.0	2	27;15	y	0.00	0	16.0	0	10;22	n	0.00	0	29.5	0	40;19	n	0.10	2	18.5	2	21;16	y	0.07	2	25.0	2	26;24	y	ENSMUSG00000034210.15	Efcab14	chr4	protein_coding	EF-hand calcium binding domain 14
known_NIR_12791	chr4	115645567;115647828	115647778;115648420	+	115645567	115648420	cassetteExon	ENSMUST00000177280.8	known	1.00	31.5	0	28;35	0	n	1.00	20.0	0	11;29	0	n	1.00	47.5	0	47;48	0	n	1.00	34.5	0	30;39	0	n	1.00	39.0	0	37;41	0	n	1.00	23.0	0	15;31	0	n	1.00	56.0	0	54;58	0	n	1.00	23.0	0	26;20	0	n	1.00	29.0	0	25;33	0	n	0.95	38.0	2	31;45	2	y	1.00	24.5	0	24;25	0	n	1.00	49.0	0	46;52	0	n	ENSMUSG00000028710.19	Atpaf1	chr4	protein_coding	ATP synthase mitochondrial F1 complex assembly factor 1
known_NIR_12792	chr4	115696478;115702862	115702819;115705417	+	115696478	115705417	cassetteExon	ENSMUST00000019677.12	known	0.00	0.0	15	0;0	15	n	0.00	0.0	17	0;0	17	n	0.12	4.0	29	3;5	29	y	0.03	0.5	19	1;0	19	n	0.09	3.0	30	2;4	30	y	0.00	0.0	11	0;0	11	n	0.02	0.5	29	1;0	29	n	0.00	0.0	12	0;0	12	n	0.00	0.0	21	0;0	21	n	0.20	6.0	24	4;8	24	y	0.09	1.0	10	1;1	10	n	0.09	1.5	15	0;3	15	n	ENSMUSG00000028708.17	Mknk1	chr4	protein_coding	MAP kinase-interacting serine/threonine kinase 1
known_NIR_12793	chr4	115705559;115712204	115712099;115714229	+	115705559	115714229	cassetteExon	ENSMUST00000019677.12	known	0.03	1.0	33	2;0	33	n	0.00	0.0	26	0;0	26	n	0.04	2.0	50	4;0	50	n	0.08	2.5	27	2;3	27	y	0.00	0.0	38	0;0	38	n	0.00	0.0	14	0;0	14	n	0.06	2.0	33	3;1	33	n	0.00	0.0	27	0;0	27	n	0.00	0.0	19	0;0	19	n	0.03	1.5	50	2;1	50	n	0.03	1.0	30	1;1	30	n	0.05	2.0	38	1;3	38	n	ENSMUSG00000028708.17	Mknk1	chr4	protein_coding	MAP kinase-interacting serine/threonine kinase 1
known_NIR_12794	chr4	115720253	115723659	+	115720253	115721736	3pMXE	ENSMUST00000144427.8	known	0.04	2	44	2	44	y	0.00	0	29	0	29	n	0.04	2	46	2	46	y	0.00	0	46	0	46	n	0.00	0	65	0	65	n	0.00	0	28	0	28	n	0.00	0	61	0	61	n	0.00	0	24	0	24	n	0.00	0	30	0	30	n	0.00	0	46	0	46	n	0.00	0	39	0	39	n	0.00	0	56	0	56	n	ENSMUSG00000028708.17	Mknk1	chr4	protein_coding	MAP kinase-interacting serine/threonine kinase 1
known_NIR_12795	chr4	115720253	115723659	+	115720253;115721809	115721736;115723659	ES	ENSMUST00000019677.12	known	0.06	2	34.0	2	44;24	y	0.00	0	27.0	0	29;25	n	0.05	2	40.0	2	46;34	y	0.00	0	37.5	0	46;29	n	0.00	0	58.0	0	65;51	n	0.00	0	30.5	0	28;33	n	0.00	0	54.5	0	61;48	n	0.00	0	24.5	0	24;25	n	0.00	0	25.0	0	30;20	n	0.00	0	43.0	0	46;40	n	0.00	0	34.5	0	39;30	n	0.00	0	50.5	0	56;45	n	ENSMUSG00000028708.17	Mknk1	chr4	protein_coding	MAP kinase-interacting serine/threonine kinase 1
known_NIR_12796	chr4	115730503	115731956	+	115730503	115731817	A3SS	ENSMUST00000019677.12	known	0.12	5	36	5	36	y	0.07	2	27	2	27	y	0.07	2	26	2	26	y	0.08	4	49	4	49	y	0.04	2	53	2	53	y	0.17	2	10	2	10	y	0.08	3	36	3	36	y	0.00	0	22	0	22	n	0.00	0	25	0	25	n	0.07	3	42	3	42	y	0.07	2	26	2	26	y	0.07	3	37	3	37	y	ENSMUSG00000028708.17	Mknk1	chr4	protein_coding	MAP kinase-interacting serine/threonine kinase 1
known_NIR_12797	chr4	115732742	115735147	+	115732742	115733778	3pMXE	ENSMUST00000150201.8	known	0.00	0	22	0	22	n	0.02	1	49	1	49	n	0.05	2	42	2	42	y	0.00	0	45	0	45	n	0.06	3	47	3	47	y	0.04	1	23	1	23	n	0.00	0	58	0	58	n	0.10	3	27	3	27	y	0.00	0	26	0	26	n	0.03	1	34	1	34	n	0.00	0	36	0	36	n	0.00	0	40	0	40	n	ENSMUSG00000028708.17	Mknk1	chr4	protein_coding	MAP kinase-interacting serine/threonine kinase 1
known_NIR_12798	chr4	115732742	115735147	+	115732742;115733821	115733778;115735147	ES	ENSMUST00000019677.12	known	0.00	0	27.0	0	22;32	n	0.02	1	45.0	1	49;41	n	0.05	2	39.0	2	42;36	y	0.00	0	42.5	0	45;40	n	0.06	3	48.5	3	47;50	y	0.05	1	20.0	1	23;17	n	0.00	0	54.0	0	58;50	n	0.10	3	26.5	3	27;26	y	0.00	0	23.0	0	26;20	n	0.03	1	34.5	1	34;35	n	0.00	0	33.5	0	36;31	n	0.00	0	36.5	0	40;33	n	ENSMUSG00000028708.17	Mknk1	chr4	protein_coding	MAP kinase-interacting serine/threonine kinase 1
known_NIR_12799	chr4	115862981	115865377	-	115862918	115865377	A3SS	ENSMUST00000125761.8	known	0.01	1	188	1	188	n	0.00	0	123	0	123	n	0.06	2	33	2	33	y	0.00	0	240	0	240	n	0.00	0	240	0	240	n	0.00	0	30	0	30	n	0.00	0	212	0	212	n	0.00	0	86	0	86	n	0.01	2	197	2	197	y	0.00	0	267	0	267	n	0.00	0	200	0	200	n	0.00	1	258	1	258	n	ENSMUSG00000034171.14	Faah	chr4	protein_coding	fatty acid amide hydrolase
known_NIR_12800	chr4	115927221	115927934	-	115927116	115927934	A3SS	ENSMUST00000050580.11	known	0.99	1273	9	1273	9	y	0.99	1439	9	1439	9	y	0.99	1364	7	1364	7	y	1.00	1294	4	1294	4	y	0.98	1537	30	1537	30	y	0.99	819	8	819	8	y	0.99	1774	19	1774	19	y	0.99	843	8	843	8	y	0.99	1215	14	1215	14	y	0.99	1931	27	1931	27	y	0.99	1549	15	1549	15	y	0.98	1835	28	1835	28	y	ENSMUSG00000063882.13	Uqcrh	chr4	protein_coding	ubiquinol-cytochrome c reductase hinge protein
known_NIR_12801	chr4	115927221	115927934	-	115927221	115927865	A5SS	ENSMUST00000134760.2	known	0.99	1273	19	1273	19	y	0.98	1439	22	1439	22	y	0.98	1364	23	1364	23	y	0.98	1294	29	1294	29	y	0.98	1537	33	1537	33	y	0.99	819	12	819	12	y	0.97	1774	46	1774	46	y	0.98	843	19	843	19	y	0.98	1215	22	1215	22	y	0.98	1931	31	1931	31	y	0.98	1549	30	1549	30	y	0.98	1835	33	1835	33	y	ENSMUSG00000063882.13	Uqcrh	chr4	protein_coding	ubiquinol-cytochrome c reductase hinge protein
known_NIR_12802	chr4	115937816	115940074	+	115937816	115945644	A3SS	ENSMUST00000030471.9	known	0.00	0	25	0	25	n	0.11	4	31	4	31	y	0.07	4	54	4	54	y	0.02	1	48	1	48	n	0.04	2	46	2	46	y	0.05	2	39	2	39	y	0.09	7	71	7	71	y	0.00	0	25	0	25	n	0.00	0	28	0	28	n	0.04	2	53	2	53	y	0.04	2	48	2	48	y	0.06	3	48	3	48	y	ENSMUSG00000028703.15	Lrrc41	chr4	protein_coding	leucine rich repeat containing 41
known_NIR_12803	chr4	116013418	116015349	+	116013418;116015154	116015090;116015349	ES	ENSMUST00000120083.8	known	0.00	0	45.0	0	47;43	n	0.00	0	32.5	0	39;26	n	0.05	4	84.5	4	86;83	y	0.02	1	46.5	1	53;40	n	0.00	0	70.0	0	83;57	n	0.02	1	49.5	1	59;40	n	0.00	0	54.5	0	61;48	n	0.00	0	41.5	0	35;48	n	0.07	2	28.5	2	29;28	y	0.07	3	41.0	3	45;37	y	0.00	0	51.5	0	55;48	n	0.09	4	42.0	4	48;36	y	ENSMUSG00000028700.15	Pomgnt1	chr4	protein_coding	protein O-linked mannose beta 1,2-N-acetylglucosaminyltransferase
known_NIR_12804	chr4	116013418	116015349	+	116015154	116015349	5pMXE	ENSMUST00000151325.2	known	0.00	0	43	0	43	n	0.00	0	26	0	26	n	0.05	4	83	4	83	y	0.02	1	40	1	40	n	0.00	0	57	0	57	n	0.02	1	40	1	40	n	0.00	0	48	0	48	n	0.00	0	48	0	48	n	0.07	2	28	2	28	y	0.07	3	37	3	37	y	0.00	0	48	0	48	n	0.10	4	36	4	36	y	ENSMUSG00000028700.15	Pomgnt1	chr4	protein_coding	protein O-linked mannose beta 1,2-N-acetylglucosaminyltransferase
known_NIR_12805	chr4	116165534	116165844	-	116165531	116165844	A3SS	ENSMUST00000239239.2	known	0.67	12	6	12	6	y	0.57	8	6	8	6	y	0.82	32	7	32	7	y	0.71	12	5	12	5	y	0.72	23	9	23	9	y	0.58	15	11	15	11	y	0.63	17	10	17	10	y	0.85	11	2	11	2	y	0.87	20	3	20	3	y	0.80	20	5	20	5	y	0.85	22	4	22	4	y	0.79	11	3	11	3	y	ENSMUSG00000003810.14	Mast2	chr4	protein_coding	microtubule associated serine/threonine kinase 2
known_NIR_12806	chr4	116167151	116167654	-	116167239	116167654	A3SS	ENSMUST00000239239.2	known	0.00	0	27	0	27	n	0.03	1	31	1	31	n	0.04	2	53	2	53	y	0.11	3	24	3	24	y	0.00	0	30	0	30	n	0.00	0	25	0	25	n	0.00	0	47	0	47	n	0.15	2	11	2	11	y	0.00	0	16	0	16	n	0.00	0	39	0	39	n	0.00	0	25	0	25	n	0.00	0	24	0	24	n	ENSMUSG00000003810.14	Mast2	chr4	protein_coding	microtubule associated serine/threonine kinase 2
known_NIR_12807	chr4	116210261	116248800	-	116210261	116228674	5pMXE	ENSMUST00000239239.2	known	1.00	13	0	13	0	n	1.00	6	0	6	0	n	1.00	34	0	34	0	n	1.00	9	0	9	0	n	1.00	17	0	17	0	n	1.00	14	0	14	0	n	0.92	22	2	22	2	y	1.00	7	0	7	0	n	1.00	9	0	9	0	n	1.00	12	0	12	0	n	1.00	12	0	12	0	n	1.00	17	0	17	0	n	ENSMUSG00000003810.14	Mast2	chr4	protein_coding	microtubule associated serine/threonine kinase 2
known_NIR_12808	chr4	116455158	116455697	+	116455158	116455371	3pMXE	ENSMUST00000146777.2	known	0.60	3	2	3	2	n	0.00	0	3	0	3	n	0.57	4	3	4	3	n	0.00	0	7	0	7	n	0.43	6	8	6	8	y	0.21	4	15	4	15	y	0.50	4	4	4	4	n	0.30	3	7	3	7	y	0.14	1	6	1	6	n	0.64	7	4	7	4	y	0.29	2	5	2	5	n	0.43	3	4	3	4	n	ENSMUSG00000034035.19	Ccdc17	chr4	protein_coding	coiled-coil domain containing 17
known_NIR_12809	chr4	116455158	116455697	+	116455158;116455484	116455371;116455697	ES	ENSMUST00000121907.9	known	0.27	3	8.0	3	2;14	y	0.00	0	5.5	0	3;8	n	0.47	4	4.5	4	3;6	y	0.00	0	6.5	0	7;6	n	0.29	6	15.0	6	8;22	y	0.24	4	13.0	4	15;11	y	0.30	4	9.5	4	4;15	y	0.18	3	13.5	3	7;20	y	0.10	1	9.0	1	6;12	n	0.41	7	10.0	7	4;16	y	0.20	2	8.0	2	5;11	y	0.35	3	5.5	3	4;7	y	ENSMUSG00000034035.19	Ccdc17	chr4	protein_coding	coiled-coil domain containing 17
known_NIR_12810	chr4	116456687	116457084	+	116456687;116456864	116456754;116457084	ES	ENSMUST00000121907.9	known	0.25	2	6.0	2	4;8	y	0.46	3	3.5	3	2;5	y	0.08	1	12.0	1	7;17	n	0.42	5	7.0	5	7;7	y	0.33	8	16.0	8	12;20	y	0.19	2	8.5	2	9;8	y	0.33	7	14.0	7	6;22	y	0.16	2	10.5	2	9;12	y	0.24	3	9.5	3	8;11	y	0.33	7	14.0	7	12;16	y	0.59	5	3.5	5	3;4	y	0.48	6	6.5	6	7;6	y	ENSMUSG00000034035.19	Ccdc17	chr4	protein_coding	coiled-coil domain containing 17
known_NIR_12811	chr4	116462960	116467600	-	116462960	116469169	A5SS	ENSMUST00000030457.12	known	0.00	0	32	0	32	n	0.00	0	36	0	36	n	0.00	0	53	0	53	n	0.00	0	38	0	38	n	0.00	0	50	0	50	n	0.12	2	14	2	14	y	0.05	2	39	2	39	y	0.00	0	23	0	23	n	0.00	0	36	0	36	n	0.00	0	54	0	54	n	0.00	0	41	0	41	n	0.00	0	49	0	49	n	ENSMUSG00000028693.16	Nasp	chr4	protein_coding	nuclear autoantigenic sperm protein (histone-binding)
known_NIR_12812	chr4	116468574	116469169	-	116462960	116469169	A3SS	ENSMUST00000030457.12	known	0.06	2	32	2	32	y	0.00	0	36	0	36	n	0.00	0	53	0	53	n	0.00	0	38	0	38	n	0.00	0	50	0	50	n	0.07	1	14	1	14	n	0.00	0	39	0	39	n	0.00	0	23	0	23	n	0.00	0	36	0	36	n	0.00	0	54	0	54	n	0.00	0	41	0	41	n	0.00	0	49	0	49	n	ENSMUSG00000028693.16	Nasp	chr4	protein_coding	nuclear autoantigenic sperm protein (histone-binding)
known_NIR_12813	chr4	116542857	116544575	+	116542857	116544604	A3SS	ENSMUST00000135573.8	known	0.00	6	3178	6	3178	y	0.00	2	2608	2	2608	y	0.00	1	3460	1	3460	n	0.00	6	3805	6	3805	y	0.00	3	3983	3	3983	y	0.00	0	1797	0	1797	n	0.00	4	3862	4	3862	y	0.00	1	1769	1	1769	n	0.00	4	3268	4	3268	y	0.00	2	4473	2	4473	y	0.00	2	3119	2	3119	y	0.00	6	4576	6	4576	y	ENSMUSG00000028691.13	Prdx1	chr4	protein_coding	peroxiredoxin 1
known_NIR_12814	chr4	116543333	116544604	+	116542857	116544604	A5SS	ENSMUST00000135573.8	known	0.00	4	3178	4	3178	y	0.00	3	2608	3	2608	y	0.00	4	3460	4	3460	y	0.00	3	3805	3	3805	y	0.00	0	3983	0	3983	n	0.00	1	1797	1	1797	n	0.00	5	3862	5	3862	y	0.00	3	1769	3	1769	y	0.00	7	3268	7	3268	y	0.00	5	4473	5	4473	y	0.00	3	3119	3	3119	y	0.00	5	4576	5	4576	y	ENSMUSG00000028691.13	Prdx1	chr4	protein_coding	peroxiredoxin 1
known_NIR_12815	chr4	116566291	116566440	+	116566291	116566437	A3SS	ENSMUST00000030452.13	known	0.00	0	11	0	11	n	0.29	4	10	4	10	y	0.00	0	15	0	15	n	0.00	0	20	0	20	n	0.14	3	18	3	18	y	0.00	0	4	0	4	n	0.17	5	24	5	24	y	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.04	1	24	1	24	n	0.07	1	14	1	14	n	0.19	3	13	3	13	y	ENSMUSG00000028689.15	Ccdc163	chr4	protein_coding	coiled-coil domain containing 163
known_NIR_12816	chr4	116566470	116566596	+	116566470	116566635	A3SS	ENSMUST00000106462.9	known	0.33	3	6	3	6	n	0.24	4	13	4	13	y	0.27	4	11	4	11	y	0.12	2	15	2	15	y	0.05	1	20	1	20	n	0.00	0	7	0	7	n	0.12	3	23	3	23	y	0.20	2	8	2	8	y	0.08	1	11	1	11	n	0.00	0	19	0	19	n	0.18	2	9	2	9	y	0.27	4	11	4	11	y	ENSMUSG00000028689.15	Ccdc163	chr4	protein_coding	coiled-coil domain containing 163
known_NIR_12817	chr4	116566470	116566635	+	116566470	116566679	A3SS	ENSMUST00000030452.13	known	1.00	6	0	6	0	n	1.00	13	0	13	0	n	1.00	11	0	11	0	n	1.00	15	0	15	0	n	0.80	20	5	20	5	y	1.00	7	0	7	0	n	1.00	23	0	23	0	n	0.73	8	3	8	3	y	1.00	11	0	11	0	n	1.00	19	0	19	0	n	0.82	9	2	9	2	y	0.79	11	3	11	3	y	ENSMUSG00000028689.15	Ccdc163	chr4	protein_coding	coiled-coil domain containing 163
known_NIR_12818	chr4	116567481	116568483	+	116567481	116568508	A3SS	ENSMUST00000030452.13	known	0.00	0	8	0	8	n	0.53	8	7	8	7	y	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.35	8	15	8	15	y	0.40	4	6	4	6	y	0.19	4	17	4	17	y	0.40	6	9	6	9	y	0.29	2	5	2	5	n	0.32	7	15	7	15	y	0.57	8	6	8	6	y	0.25	3	9	3	9	y	ENSMUSG00000028689.15	Ccdc163	chr4	protein_coding	coiled-coil domain containing 163
known_NIR_12819	chr4	116570023	116571213	+	116570023	116571285	A3SS	ENSMUST00000106462.9	known	0.14	1	6	1	6	n	0.22	2	7	2	7	n	0.20	2	8	2	8	y	0.11	1	8	1	8	n	0.50	7	7	7	7	y	0.00	0	2	0	2	n	0.09	1	10	1	10	n	0.17	1	5	1	5	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.38	3	5	3	5	n	0.09	1	10	1	10	n	ENSMUSG00000028689.15	Ccdc163	chr4	protein_coding	coiled-coil domain containing 163
known_NIR_12820	chr4	116658441	116658650	+	116658441	116658646	A3SS	ENSMUST00000045542.13	known	0.00	0	25	0	25	n	0.07	1	13	1	13	n	0.00	0	22	0	22	n	0.08	2	23	2	23	y	0.00	0	43	0	43	n	0.00	0	20	0	20	n	0.00	0	28	0	28	n	0.00	0	13	0	13	n	0.00	0	21	0	21	n	0.00	0	32	0	32	n	0.00	0	23	0	23	n	0.03	1	29	1	29	n	ENSMUSG00000033985.18	Tesk2	chr4	protein_coding	testis-specific kinase 2
known_NIR_12821	chr4	116662252	116662329	-	116656405	116662329	A3SS	ENSMUST00000106455.8	known	1.00	26	0	26	0	n	1.00	21	0	21	0	n	1.00	33	0	33	0	n	1.00	18	0	18	0	n	1.00	27	0	27	0	n	1.00	23	0	23	0	n	0.93	25	2	25	2	y	1.00	21	0	21	0	n	1.00	17	0	17	0	n	1.00	35	0	35	0	n	1.00	20	0	20	0	n	1.00	21	0	21	0	n	ENSMUSG00000028688.14	Toe1	chr4	protein_coding	target of EGR1, member 1 (nuclear)
known_NIR_12822	chr4	116662597	116662683	-	116662491	116662683	A3SS	ENSMUST00000106455.8	known	0.05	1	18	1	18	n	0.00	0	8	0	8	n	0.11	4	31	4	31	y	0.00	0	13	0	13	n	0.12	3	23	3	23	y	0.00	0	14	0	14	n	0.00	0	18	0	18	n	0.00	0	8	0	8	n	0.15	2	11	2	11	y	0.05	1	18	1	18	n	0.00	0	11	0	11	n	0.04	1	24	1	24	n	ENSMUSG00000028688.14	Toe1	chr4	protein_coding	target of EGR1, member 1 (nuclear)
known_NIR_12823	chr4	116664001	116664665	-	116663956	116664665	A3SS	ENSMUST00000106455.8	known	0.14	2	12	2	12	y	0.00	0	14	0	14	n	0.16	3	16	3	16	y	0.00	0	14	0	14	n	0.00	0	25	0	25	n	0.05	1	20	1	20	n	0.18	4	18	4	18	y	0.17	4	19	4	19	y	0.14	3	18	3	18	y	0.10	1	9	1	9	n	0.07	1	13	1	13	n	0.05	1	21	1	21	n	ENSMUSG00000028688.14	Toe1	chr4	protein_coding	target of EGR1, member 1 (nuclear)
known_NIR_12824	chr4	116848955	116850023	-	116848955	116849761	A5SS	ENSMUST00000135164.2	known	0.00	0	309	0	309	n	0.00	1	289	1	289	n	0.00	1	260	1	260	n	0.01	2	295	2	295	y	0.01	2	333	2	333	y	0.01	1	191	1	191	n	0.01	4	366	4	366	y	0.02	3	171	3	171	y	0.02	4	247	4	247	y	0.00	0	447	0	447	n	0.00	0	350	0	350	n	0.01	3	333	3	333	y	ENSMUSG00000028684.15	Urod	chr4	protein_coding	uroporphyrinogen decarboxylase
known_NIR_12825	chr4	116848955	116850023	-	116848955;116849922	116849761;116850023	ES	ENSMUST00000030446.15	known	0.00	0	278.5	0	309;248	n	0.00	1	274.5	1	289;260	n	0.00	1	248.0	1	260;236	n	0.01	2	273.5	2	295;252	y	0.01	2	314.5	2	333;296	y	0.01	1	184.5	1	191;178	n	0.01	4	352.0	4	366;338	y	0.02	3	164.5	3	171;158	y	0.02	4	253.0	4	247;259	y	0.00	0	407.5	0	447;368	n	0.00	0	325.5	0	350;301	n	0.01	3	301.0	3	333;269	y	ENSMUSG00000028684.15	Urod	chr4	protein_coding	uroporphyrinogen decarboxylase
known_NIR_12826	chr4	116848955	116850023	-	116849922	116850023	3pMXE	ENSMUST00000123079.8	known	0.00	0	248	0	248	n	0.00	1	260	1	260	n	0.00	1	236	1	236	n	0.01	2	252	2	252	y	0.01	2	296	2	296	y	0.01	1	178	1	178	n	0.01	4	338	4	338	y	0.02	3	158	3	158	y	0.02	4	259	4	259	y	0.00	0	368	0	368	n	0.00	0	301	0	301	n	0.01	3	269	3	269	y	ENSMUSG00000028684.15	Urod	chr4	protein_coding	uroporphyrinogen decarboxylase
known_NIR_12827	chr4	116850220	116850585	-	116850220;116850507	116850445;116850585	ES	ENSMUST00000030446.15	known	0.01	2	227.5	2	207;248	y	0.03	6	226.5	6	224;229	y	0.04	8	217.0	8	203;231	y	0.01	4	270.0	4	279;261	y	0.02	6	274.0	6	270;278	y	0.01	1	140.5	1	136;145	n	0.01	2	279.0	2	291;267	y	0.03	4	148.0	4	139;157	y	0.03	6	225.5	6	224;227	y	0.01	3	359.0	3	337;381	y	0.02	5	275.0	5	281;269	y	0.02	6	296.5	6	291;302	y	ENSMUSG00000028684.15	Urod	chr4	protein_coding	uroporphyrinogen decarboxylase
known_NIR_12828	chr4	116850220	116850585	-	116850507	116850585	3pMXE	ENSMUST00000139209.8	known	0.01	2	248	2	248	y	0.03	6	229	6	229	y	0.03	8	231	8	231	y	0.02	4	261	4	261	y	0.02	6	278	6	278	y	0.01	1	145	1	145	n	0.01	2	267	2	267	y	0.02	4	157	4	157	y	0.03	6	227	6	227	y	0.01	3	381	3	381	y	0.02	5	269	5	269	y	0.02	6	302	6	302	y	ENSMUSG00000028684.15	Urod	chr4	protein_coding	uroporphyrinogen decarboxylase
known_NIR_12829	chr4	116850662	116850782	-	116850664	116850782	A3SS	ENSMUST00000030446.15	known	0.00	0	237	0	237	n	0.00	0	186	0	186	n	0.01	2	198	2	198	y	0.00	0	275	0	275	n	0.00	0	275	0	275	n	0.00	0	159	0	159	n	0.02	4	256	4	256	y	0.00	0	138	0	138	n	0.00	0	222	0	222	n	0.00	0	331	0	331	n	0.00	0	230	0	230	n	0.00	0	294	0	294	n	ENSMUSG00000028684.15	Urod	chr4	protein_coding	uroporphyrinogen decarboxylase
known_NIR_12830	chr4	116916050	116916383	+	116916050	116922538	A3SS	ENSMUST00000106448.9	known	0.09	3	32	3	32	y	0.00	0	24	0	24	n	0.00	0	41	0	41	n	0.00	0	29	0	29	n	0.00	0	26	0	26	n	0.04	1	22	1	22	n	0.00	0	29	0	29	n	0.00	0	15	0	15	n	0.08	2	23	2	23	y	0.00	0	25	0	25	n	0.00	0	20	0	20	n	0.00	0	34	0	34	n	ENSMUSG00000028683.15	Eif2b3	chr4	protein_coding	eukaryotic translation initiation factor 2B, subunit 3
known_NIR_12831	chr4	116927984	116931158	+	116927984	116938755	A3SS	ENSMUST00000106448.9	known	0.00	0	60	0	60	n	0.00	0	43	0	43	n	0.00	0	87	0	87	n	0.00	0	35	0	35	n	0.00	0	43	0	43	n	0.00	0	36	0	36	n	0.00	0	50	0	50	n	0.00	0	30	0	30	n	0.00	0	33	0	33	n	0.02	1	53	1	53	n	0.03	2	56	2	56	y	0.00	0	43	0	43	n	ENSMUSG00000028683.15	Eif2b3	chr4	protein_coding	eukaryotic translation initiation factor 2B, subunit 3
known_NIR_12832	chr4	116988014	116988310	-	116988014	116988259	A5SS	ENSMUST00000126135.2	known	0.00	0	92	0	92	n	0.00	0	88	0	88	n	0.01	2	215	2	215	y	0.01	1	80	1	80	n	0.02	2	95	2	95	y	0.00	0	39	0	39	n	0.00	0	134	0	134	n	0.00	0	39	0	39	n	0.00	0	49	0	49	n	0.00	0	163	0	163	n	0.00	0	44	0	44	n	0.00	0	227	0	227	n	ENSMUSG00000028680.15	Plk3	chr4	protein_coding	polo like kinase 3
known_NIR_12833	chr4	117109331;117109910	117109825;117123057	+	117109331	117123057	cassetteExon	ENSMUST00000062824.12	known	0.00	0.0	95	0;0	95	n	0.02	2.0	119	0;4	119	n	0.00	0.5	104	0;1	104	n	0.04	3.5	80	2;5	80	y	0.03	4.5	144	4;5	144	y	0.00	0.0	76	0;0	76	n	0.02	2.5	127	3;2	127	y	0.04	3.0	74	4;2	74	y	0.02	1.5	94	0;3	94	n	0.07	9.5	128	13;6	128	y	0.02	1.5	90	1;2	90	n	0.02	2.5	115	3;2	115	y	ENSMUSG00000048772.16	Tmem53	chr4	protein_coding	transmembrane protein 53
known_NIR_12834	chr4	117109352	117123057	+	117109331	117123057	A5SS	ENSMUST00000062824.12	known	0.09	9	95	9	95	y	0.06	7	119	7	119	y	0.09	10	104	10	104	y	0.09	8	80	8	80	y	0.05	8	144	8	144	y	0.06	5	76	5	76	y	0.07	9	127	9	127	y	0.10	8	74	8	74	y	0.06	6	94	6	94	y	0.09	12	128	12	128	y	0.08	8	90	8	90	y	0.07	8	115	8	115	y	ENSMUSG00000048772.16	Tmem53	chr4	protein_coding	transmembrane protein 53
known_NIR_12835	chr4	117109352	117123057	+	117109910	117123057	A5SS&ES	ENSMUST00000125943.8	known	1.00	9	0	9	0	n	0.64	7	4	7	4	y	0.91	10	1	10	1	n	0.62	8	5	8	5	y	0.62	8	5	8	5	y	1.00	5	0	5	0	n	0.82	9	2	9	2	y	0.80	8	2	8	2	y	0.67	6	3	6	3	n	0.67	12	6	12	6	y	0.80	8	2	8	2	y	0.80	8	2	8	2	y	ENSMUSG00000048772.16	Tmem53	chr4	protein_coding	transmembrane protein 53
known_NIR_12836	chr4	117134061	117134568	-	117130552	117134568	A3SS	ENSMUST00000030439.15	known	0.00	0	73	0	73	n	0.00	0	53	0	53	n	0.05	4	80	4	80	y	0.00	0	52	0	52	n	0.00	0	88	0	88	n	0.00	0	43	0	43	n	0.03	2	64	2	64	y	0.07	4	54	4	54	y	0.00	0	49	0	49	n	0.03	2	56	2	56	y	0.00	0	45	0	45	n	0.00	0	54	0	54	n	ENSMUSG00000028677.20	Rnf220	chr4	protein_coding	ring finger protein 220
known_NIR_12837	chr4	117142708	117143048	-	117142708	117143126	A5SS	ENSMUST00000030439.15	known	0.68	21	10	21	10	y	0.65	31	17	31	17	y	0.76	55	17	55	17	y	0.55	23	19	23	19	y	0.74	39	14	39	14	y	0.69	36	16	36	16	y	0.71	48	20	48	20	y	0.76	32	10	32	10	y	0.54	21	18	21	18	y	0.59	35	24	35	24	y	0.64	37	21	37	21	y	0.66	29	15	29	15	y	ENSMUSG00000028677.20	Rnf220	chr4	protein_coding	ring finger protein 220
known_NIR_12838	chr4	117143169	117145560	-	117143169	117146223	A5SS	ENSMUST00000030439.15	known	0.05	1	19	1	19	n	0.00	0	28	0	28	n	0.15	7	41	7	41	y	0.06	2	31	2	31	y	0.09	5	51	5	51	y	0.06	2	31	2	31	y	0.10	5	43	5	43	y	0.12	4	30	4	30	y	0.04	1	24	1	24	n	0.12	6	42	6	42	y	0.00	0	45	0	45	n	0.00	0	41	0	41	n	ENSMUSG00000028677.20	Rnf220	chr4	protein_coding	ring finger protein 220
known_NIR_12839	chr4	117146265	117146396	-	117146265	117146400	A5SS	ENSMUST00000221654.2	known	0.30	6	14	6	14	y	0.44	7	9	7	9	y	0.29	12	30	12	30	y	0.32	9	19	9	19	y	0.32	13	28	13	28	y	0.32	7	15	7	15	y	0.12	3	23	3	23	y	0.53	10	9	10	9	y	0.33	5	10	5	10	y	0.52	16	15	16	15	y	0.35	12	22	12	22	y	0.24	7	22	7	22	y	ENSMUSG00000028677.20	Rnf220	chr4	protein_coding	ring finger protein 220
known_NIR_12840	chr4	117439913;117445177	117444982;117446295	+	117439913	117446295	cassetteExon	ENSMUST00000037127.15	known	0.03	2.5	85	2;3	85	y	0.07	4.5	64	4;5	64	y	0.06	6.5	100	6;7	100	y	0.03	3.5	98	2;5	98	y	0.08	8.0	97	7;9	97	y	0.05	3.0	63	4;2	63	y	0.04	5.0	120	5;5	120	y	0.06	2.5	39	1;4	39	n	0.06	4.0	60	5;3	60	y	0.06	7.0	112	9;5	112	y	0.02	1.5	94	0;3	94	n	0.04	5.0	117	6;4	117	y	ENSMUSG00000033423.17	Eri3	chr4	protein_coding	exoribonuclease 3
known_NIR_12841	chr4	117539179	117539411	-	117539190	117539411	A3SS	ENSMUST00000135582.8	known	0.50	7	7	7	7	y	0.11	1	8	1	8	n	0.00	0	7	0	7	n	0.59	13	9	13	9	y	0.44	7	9	7	9	y	0.50	6	6	6	6	y	0.00	0	7	0	7	n	0.29	2	5	2	5	n	0.25	4	12	4	12	y	0.40	6	9	6	9	y	0.61	11	7	11	7	y	0.18	2	9	2	9	y	ENSMUSG00000009640.12	Dmap1	chr4	protein_coding	DNA methyltransferase 1-associated protein 1
known_NIR_12842	chr4	117714018	117714327	+	117714018	117714400	A3SS	ENSMUST00000063857.11	known	0.00	0	31	0	31	n	0.00	0	29	0	29	n	0.00	0	39	0	39	n	0.00	0	42	0	42	n	0.00	0	81	0	81	n	0.08	2	24	2	24	y	0.00	0	75	0	75	n	0.00	0	43	0	43	n	0.00	0	28	0	28	n	0.00	0	71	0	71	n	0.00	0	41	0	41	n	0.00	0	51	0	51	n	ENSMUSG00000028542.18	Slc6a9	chr4	protein_coding	solute carrier family 6 (neurotransmitter transporter, glycine), member 9
known_NIR_12843	chr4	117743835	117743940	-	117743835	117744367	A5SS	ENSMUST00000036380.14	known	0.01	2	270	2	270	y	0.04	9	237	9	237	y	0.02	9	374	9	374	y	0.01	3	270	3	270	y	0.03	11	391	11	391	y	0.03	5	167	5	167	y	0.03	11	407	11	407	y	0.02	4	172	4	172	y	0.03	8	223	8	223	y	0.02	8	356	8	356	y	0.00	1	283	1	283	n	0.01	5	340	5	340	y	ENSMUSG00000033379.14	Atp6v0b	chr4	protein_coding	ATPase, H+ transporting, lysosomal V0 subunit B
known_NIR_12844	chr4	117743891	117744367	-	117743835	117744367	A3SS	ENSMUST00000036380.14	known	0.02	6	270	6	270	y	0.00	1	237	1	237	n	0.00	0	374	0	374	n	0.01	4	270	4	270	y	0.01	4	391	4	391	y	0.01	1	167	1	167	n	0.02	9	407	9	407	y	0.01	2	172	2	172	y	0.02	4	223	4	223	y	0.02	7	356	7	356	y	0.01	3	283	3	283	y	0.00	0	340	0	340	n	ENSMUSG00000033379.14	Atp6v0b	chr4	protein_coding	ATPase, H+ transporting, lysosomal V0 subunit B
known_NIR_12845	chr4	117752122	117752409	-	117752042	117752409	A3SS	ENSMUST00000134752.8	known	1.00	38	0	38	0	n	1.00	48	0	48	0	n	0.93	28	2	28	2	y	0.93	26	2	26	2	y	1.00	37	0	37	0	n	0.94	30	2	30	2	y	0.97	72	2	72	2	y	1.00	28	0	28	0	n	0.90	18	2	18	2	y	0.95	37	2	37	2	y	1.00	41	0	41	0	n	1.00	31	0	31	0	n	ENSMUSG00000033365.15	Ipo13	chr4	protein_coding	importin 13
known_NIR_12846	chr4	117797697;117814715	117814632;117815625	-	117797697	117815625	cassetteExon	ENSMUST00000030263.9	known	0.01	2.5	179	2;3	179	y	0.02	4.0	193	2;6	193	y	0.02	3.5	168	4;3	168	y	0.03	6.0	196	8;4	196	y	0.02	5.0	211	4;6	211	y	0.02	1.5	95	1;2	95	n	0.04	10.5	227	11;10	227	y	0.02	3.0	119	3;3	119	y	0.04	6.0	142	4;8	142	y	0.02	4.5	218	4;5	218	y	0.02	4.5	214	4;5	214	y	0.03	6.0	201	3;9	201	y	ENSMUSG00000028538.13	St3gal3	chr4	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 3
known_NIR_12847	chr4	117821621	117825535	-	117821621	117871902	A5SS	ENSMUST00000030263.9	known	0.01	1	172	1	172	n	0.00	0	172	0	172	n	0.00	0	232	0	232	n	0.01	1	194	1	194	n	0.00	1	263	1	263	n	0.00	0	113	0	113	n	0.00	0	244	0	244	n	0.00	0	161	0	161	n	0.00	0	160	0	160	n	0.01	2	265	2	265	y	0.00	0	184	0	184	n	0.01	2	244	2	244	y	ENSMUSG00000028538.13	St3gal3	chr4	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 3
known_NIR_12848	chr4	117889079	117964746	-	117889079;117911894	117911847;117964746	ES	ENSMUST00000030263.9	known	0.09	14	145.0	14	127;163	y	0.06	9	134.5	9	135;134	y	0.03	5	143.5	5	150;137	y	0.09	16	163.0	16	153;173	y	0.08	19	210.0	19	208;212	y	0.06	6	94.5	6	98;91	y	0.07	16	230.0	16	225;235	y	0.09	11	110.5	11	115;106	y	0.05	9	161.0	9	154;168	y	0.04	12	261.0	12	264;258	y	0.08	13	159.0	13	163;155	y	0.08	19	211.5	19	221;202	y	ENSMUSG00000028538.13	St3gal3	chr4	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 3
known_NIR_12849	chr4	117964890	117991931	-	117964890	117991587	A5SS	ENSMUST00000030263.9	known	0.26	27	75	27	75	y	0.25	28	84	28	84	y	0.22	31	112	31	112	y	0.24	32	100	32	100	y	0.22	37	129	37	129	y	0.31	28	62	28	62	y	0.21	29	111	29	111	y	0.30	30	69	30	69	y	0.29	35	84	35	84	y	0.26	37	105	37	105	y	0.22	20	71	20	71	y	0.28	49	123	49	123	y	ENSMUSG00000028538.13	St3gal3	chr4	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 3
known_NIR_12850	chr4	118006553	118010387	-	118006063	118010387	A3SS	ENSMUST00000106406.9	known	0.23	7	23	7	23	y	0.20	3	12	3	12	y	0.39	24	38	24	38	y	0.29	10	24	10	24	y	0.36	17	30	17	30	y	0.38	11	18	11	18	y	0.29	17	41	17	41	y	0.25	8	24	8	24	y	0.40	12	18	12	18	y	0.24	5	16	5	16	y	0.29	9	22	9	22	y	0.24	8	25	8	25	y	ENSMUSG00000033326.16	Kdm4a	chr4	protein_coding	lysine (K)-specific demethylase 4A
known_NIR_12851	chr4	118034760	118037090	-	118034773	118037090	A3SS	ENSMUST00000106406.9	known	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	35	0	35	n	0.05	1	18	1	18	n	0.00	0	19	0	19	n	0.00	0	15	0	15	n	0.00	0	19	0	19	n	0.00	0	15	0	15	n	0.00	0	4	0	4	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.10	3	26	3	26	y	ENSMUSG00000033326.16	Kdm4a	chr4	protein_coding	lysine (K)-specific demethylase 4A
known_NIR_12852	chr4	118083768;118085042	118085016;118087892	-	118083768	118087892	cassetteExon	ENSMUST00000049074.13	known	0.00	0.0	71	0;0	71	n	0.04	2.0	48	0;4	48	n	0.01	1.0	107	0;2	107	n	0.02	2.0	87	2;2	87	y	0.04	4.5	109	4;5	109	y	0.00	0.0	41	0;0	41	n	0.03	3.0	93	3;3	93	y	0.02	1.5	79	0;3	79	n	0.02	2.0	84	2;2	84	y	0.02	3.5	156	4;3	156	y	0.02	1.5	71	1;2	71	n	0.03	4.0	147	4;4	147	y	ENSMUSG00000033295.15	Ptprf	chr4	protein_coding	protein tyrosine phosphatase, receptor type, F
known_NIR_12853	chr4	118266746	118268082	+	118266583	118268082	A5SS	ENSMUST00000084319.11	known	0.14	6	37	6	37	y	0.15	5	28	5	28	y	0.17	8	39	8	39	y	0.08	4	45	4	45	y	0.11	9	74	9	74	y	0.06	2	29	2	29	y	0.24	14	44	14	44	y	0.11	3	25	3	25	y	0.20	7	28	7	28	y	0.13	6	39	6	39	y	0.12	5	37	5	37	y	0.20	10	39	10	39	y	ENSMUSG00000006392.17	Med8	chr4	protein_coding	mediator complex subunit 8
known_NIR_12854	chr4	118268200	118268723	+	118268200	118268895	A3SS	ENSMUST00000084319.11	known	0.08	1	12	1	12	n	0.08	1	12	1	12	n	0.18	6	27	6	27	y	0.10	2	19	2	19	y	0.29	7	17	7	17	y	0.15	2	11	2	11	y	0.10	3	26	3	26	y	0.20	3	12	3	12	y	0.00	0	17	0	17	n	0.15	4	22	4	22	y	0.09	2	21	2	21	y	0.04	1	26	1	26	n	ENSMUSG00000006392.17	Med8	chr4	protein_coding	mediator complex subunit 8
known_NIR_12855	chr4	118268200	118268855	+	118268200	118268895	A3SS	ENSMUST00000084319.11	known	0.91	118	12	118	12	y	0.89	100	12	100	12	y	0.85	150	27	150	27	y	0.88	146	19	146	19	y	0.92	201	17	201	17	y	0.90	94	11	94	11	y	0.87	179	26	179	26	y	0.88	86	12	86	12	y	0.85	100	17	100	17	y	0.89	172	22	172	22	y	0.86	127	21	127	21	y	0.86	157	26	157	26	y	ENSMUSG00000006392.17	Med8	chr4	protein_coding	mediator complex subunit 8
known_NIR_12856	chr4	118268200	118268855	+	118268200;118268770	118268723;118268855	ES	ENSMUST00000106384.10	known	0.98	118	2.0	118	1;3	n	1.00	100	0.5	100	1;0	n	0.97	150	4.0	150	6;2	y	0.98	146	2.5	146	2;3	y	0.98	201	5.0	201	7;3	y	0.99	94	1.0	94	2;0	n	0.98	179	3.0	179	3;3	y	0.95	86	4.5	86	3;6	y	0.99	100	1.5	100	0;3	n	0.98	172	4.0	172	4;4	y	0.98	127	2.5	127	2;3	y	0.99	157	1.0	157	1;1	n	ENSMUSG00000006392.17	Med8	chr4	protein_coding	mediator complex subunit 8
known_NIR_12857	chr4	118269049	118269549	+	118268999	118269549	A5SS	ENSMUST00000084319.11	known	0.00	0	172	0	172	n	0.00	0	147	0	147	n	0.00	0	206	0	206	n	0.00	0	175	0	175	n	0.00	0	232	0	232	n	0.00	0	113	0	113	n	0.00	0	230	0	230	n	0.00	0	129	0	129	n	0.00	0	155	0	155	n	0.01	2	237	2	237	y	0.00	0	161	0	161	n	0.00	0	200	0	200	n	ENSMUSG00000006392.17	Med8	chr4	protein_coding	mediator complex subunit 8
known_NIR_12858	chr4	118270922	118271921	+	118271072	118271921	A5SS	ENSMUST00000084319.11	known	0.02	4	197	4	197	y	0.00	0	156	0	156	n	0.00	0	178	0	178	n	0.00	0	120	0	120	n	0.00	0	220	0	220	n	0.00	0	115	0	115	n	0.00	0	205	0	205	n	0.00	0	113	0	113	n	0.00	0	142	0	142	n	0.00	1	263	1	263	n	0.00	0	194	0	194	n	0.01	1	185	1	185	n	ENSMUSG00000006392.17	Med8	chr4	protein_coding	mediator complex subunit 8
known_NIR_12859	chr4	118285412	118285641	+	118285412	118287693	A3SS	ENSMUST00000006557.13	known	0.00	0	111	0	111	n	0.00	0	104	0	104	n	0.01	1	142	1	142	n	0.00	0	119	0	119	n	0.00	0	176	0	176	n	0.00	0	112	0	112	n	0.00	0	150	0	150	n	0.00	0	115	0	115	n	0.00	0	118	0	118	n	0.01	2	195	2	195	y	0.00	0	105	0	105	n	0.00	0	142	0	142	n	ENSMUSG00000006390.16	Elovl1	chr4	protein_coding	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1
known_NIR_12860	chr4	118287027	118287693	+	118285412	118287693	A5SS	ENSMUST00000006557.13	known	0.06	7	111	7	111	y	0.05	6	104	6	104	y	0.03	4	142	4	142	y	0.08	11	119	11	119	y	0.07	13	176	13	176	y	0.02	2	112	2	112	y	0.03	5	150	5	150	y	0.07	8	115	8	115	y	0.04	5	118	5	118	y	0.06	13	195	13	195	y	0.09	10	105	10	105	y	0.06	9	142	9	142	y	ENSMUSG00000006390.16	Elovl1	chr4	protein_coding	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1
known_NIR_12861	chr4	118287752	118288260	+	118287752;118288102	118287912;118288260	ES	ENSMUST00000006557.13	known	0.04	5	128.0	5	149;107	y	0.09	10	98.5	10	97;100	y	0.00	0	191.5	0	195;188	n	0.01	1	151.0	1	153;149	n	0.01	2	168.5	2	199;138	y	0.02	2	113.5	2	120;107	y	0.03	5	154.5	5	189;120	y	0.00	0	106.0	0	126;86	n	0.04	5	122.5	5	145;100	y	0.01	2	172.0	2	213;131	y	0.02	2	129.0	2	136;122	y	0.01	2	175.0	2	199;151	y	ENSMUSG00000006390.16	Elovl1	chr4	protein_coding	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1
known_NIR_12862	chr4	118331610	118332621	-	118331599	118332621	A3SS	ENSMUST00000184261.8	known	1.00	18	0	18	0	n	1.00	15	0	15	0	n	0.92	34	3	34	3	y	1.00	7	0	7	0	n	1.00	25	0	25	0	n	1.00	21	0	21	0	n	1.00	39	0	39	0	n	1.00	14	0	14	0	n	1.00	6	0	6	0	n	0.82	18	4	18	4	y	1.00	13	0	13	0	n	1.00	19	0	19	0	n	ENSMUSG00000033191.15	Tie1	chr4	protein_coding	tyrosine kinase with immunoglobulin-like and EGF-like domains 1
known_NIR_12863	chr4	118384534	118386396	+	118384441	118386396	A5SS	ENSMUST00000106367.8	known	0.48	13	14	13	14	y	0.42	11	15	11	15	y	0.71	5	2	5	2	n	0.50	21	21	21	21	y	0.38	11	18	11	18	y	0.44	4	5	4	5	n	0.51	21	20	21	20	y	0.56	10	8	10	8	y	0.57	23	17	23	17	y	0.69	31	14	31	14	y	0.71	22	9	22	9	y	0.55	17	14	17	14	y	ENSMUSG00000028536.13	2610528J11Rik	chr4	protein_coding	RIKEN cDNA 2610528J11 gene
known_NIR_12864	chr4	118400696	118401130	-	118400696	118400797	5pMXE	ENSMUST00000060214.10	known	1.00	14	0	14	0	n	1.00	13	0	13	0	n	0.94	30	2	30	2	y	1.00	16	0	16	0	n	1.00	24	0	24	0	n	0.92	23	2	23	2	y	1.00	22	0	22	0	n	1.00	16	0	16	0	n	1.00	11	0	11	0	n	0.80	16	4	16	4	y	0.82	14	3	14	3	y	0.95	19	1	19	1	n	ENSMUSG00000050854.10	Tmem125	chr4	protein_coding	transmembrane protein 125
known_NIR_12865	chr4	118966169;118973317	118973204;118977588	+	118966169	118977588	cassetteExon	ENSMUST00000030398.10	known	0.00	0.0	16	0;0	16	n	0.00	0.0	22	0;0	22	n	0.04	2.5	58	3;2	58	y	0.00	0.0	21	0;0	21	n	0.00	0.0	39	0;0	39	n	0.00	0.0	16	0;0	16	n	0.03	0.5	18	0;1	18	n	0.00	0.0	13	0;0	13	n	0.00	0.0	15	0;0	15	n	0.00	0.0	14	0;0	14	n	0.07	1.0	14	2;0	14	n	0.00	0.0	33	0;0	33	n	ENSMUSG00000028645.12	Slc2a1	chr4	protein_coding	solute carrier family 2 (facilitated glucose transporter), member 1
known_NIR_12866	chr4	118989880	118990549	+	118989880;118990456	118990294;118990549	ES	ENSMUST00000030398.10	known	0.00	0	39.5	0	47;32	n	0.00	0	19.0	0	15;23	n	0.00	0	81.0	0	86;76	n	0.00	0	31.5	0	28;35	n	0.00	0	40.0	0	41;39	n	0.00	0	14.5	0	10;19	n	0.05	2	40.0	2	36;44	y	0.00	0	16.0	0	17;15	n	0.00	0	24.5	0	32;17	n	0.00	0	24.5	0	22;27	n	0.00	0	24.5	0	21;28	n	0.00	0	25.0	0	25;25	n	ENSMUSG00000028645.12	Slc2a1	chr4	protein_coding	solute carrier family 2 (facilitated glucose transporter), member 1
known_NIR_12867	chr4	119028239	119030860	-	119028239	119030243	A5SS	ENSMUST00000052715.10	known	0.29	2	5	2	5	n	1.00	5	0	5	0	n	0.36	5	9	5	9	y	1.00	2	0	2	0	n	0.55	6	5	6	5	y	0.78	7	2	7	2	n	0.50	9	9	9	9	y	0.00	0	2	0	2	n	0.75	3	1	3	1	n	0.62	8	5	8	5	y	0.86	6	1	6	1	n	0.75	6	2	6	2	n	ENSMUSG00000045268.14	Zfp691	chr4	protein_coding	zinc finger protein 691
known_NIR_12868	chr4	119028239	119030860	-	119028239	119031335	A5SS	ENSMUST00000106355.5	known	0.20	2	8	2	8	y	0.33	5	10	5	10	y	0.33	5	10	5	10	y	0.15	2	11	2	11	y	0.43	6	8	6	8	y	0.50	7	7	7	7	y	0.64	9	5	9	5	y	0.00	0	5	0	5	n	0.38	3	5	3	5	n	0.62	8	5	8	5	y	0.50	6	6	6	6	y	0.55	6	5	6	5	y	ENSMUSG00000045268.14	Zfp691	chr4	protein_coding	zinc finger protein 691
known_NIR_12869	chr4	119028239	119031335	-	119028239	119030243	5pMXE	ENSMUST00000052715.10	known	0.62	8	5	8	5	y	1.00	10	0	10	0	n	0.53	10	9	10	9	y	1.00	11	0	11	0	n	0.62	8	5	8	5	y	0.78	7	2	7	2	n	0.36	5	9	5	9	y	0.71	5	2	5	2	n	0.83	5	1	5	1	n	0.50	5	5	5	5	y	0.86	6	1	6	1	n	0.71	5	2	5	2	n	ENSMUSG00000045268.14	Zfp691	chr4	protein_coding	zinc finger protein 691
known_NIR_12870	chr4	119052972	119053069	+	119052683	119053069	A5SS	ENSMUST00000030395.9	known	0.02	1	45	1	45	n	0.04	2	55	2	55	y	0.15	5	29	5	29	y	0.05	2	39	2	39	y	0.03	2	70	2	70	y	0.04	2	50	2	50	y	0.03	2	65	2	65	y	0.00	0	31	0	31	n	0.09	4	41	4	41	y	0.04	3	68	3	68	y	0.03	1	37	1	37	n	0.00	0	35	0	35	n	ENSMUSG00000028643.12	Svbp	chr4	protein_coding	small vasohibin binding protein
known_NIR_12871	chr4	119053218	119058111	+	119053218	119058094	A3SS	ENSMUST00000030395.9	known	0.03	2	62	2	62	y	0.00	0	60	0	60	n	0.07	3	43	3	43	y	0.00	0	42	0	42	n	0.00	0	83	0	83	n	0.00	0	29	0	29	n	0.03	3	88	3	88	y	0.00	0	42	0	42	n	0.00	0	40	0	40	n	0.00	0	82	0	82	n	0.00	0	48	0	48	n	0.00	0	57	0	57	n	ENSMUSG00000028643.12	Svbp	chr4	protein_coding	small vasohibin binding protein
known_NIR_12872	chr4	119053218;119056007	119055956;119058094	+	119053218	119058094	cassetteExon	ENSMUST00000030395.9	known	0.03	2.0	62	1;3	62	n	0.01	0.5	60	1;0	60	n	0.00	0.0	43	0;0	43	n	0.03	1.5	42	3;0	42	n	0.05	4.0	83	5;3	83	y	0.08	2.5	29	2;3	29	y	0.00	0.0	88	0;0	88	n	0.00	0.0	42	0;0	42	n	0.02	1.0	40	2;0	40	n	0.00	0.0	82	0;0	82	n	0.01	0.5	48	1;0	48	n	0.02	1.0	57	1;1	57	n	ENSMUSG00000028643.12	Svbp	chr4	protein_coding	small vasohibin binding protein
known_NIR_12873	chr4	119089666	119089833	-	119089666	119089780	A5SS	ENSMUST00000141112.2	known	0.01	1	76	1	76	n	0.00	0	72	0	72	n	0.06	5	72	5	72	y	0.01	1	77	1	77	n	0.00	0	113	0	113	n	0.07	4	57	4	57	y	0.02	3	120	3	120	y	0.04	2	44	2	44	y	0.02	1	62	1	62	n	0.00	0	90	0	90	n	0.00	0	83	0	83	n	0.00	0	64	0	64	n	ENSMUSG00000078584.10	AU022252	chr4	protein_coding	expressed sequence AU022252
known_NIR_12874	chr4	119091175	119092443	+	119090627	119092443	A5SS	ENSMUST00000121111.9	known	0.00	0	44	0	44	n	0.00	0	9	0	9	n	0.04	3	80	3	80	y	0.00	0	16	0	16	n	0.02	1	56	1	56	n	0.06	4	67	4	67	y	0.00	0	29	0	29	n	0.00	0	53	0	53	n	0.00	0	10	0	10	n	0.00	0	25	0	25	n	0.00	0	22	0	22	n	0.00	0	28	0	28	n	ENSMUSG00000028641.17	P3h1	chr4	protein_coding	prolyl 3-hydroxylase 1
known_NIR_12875	chr4	119092595	119093971	+	119092595	119093974	A3SS	ENSMUST00000121111.9	known	0.00	0	15	0	15	n	0.00	0	18	0	18	n	0.01	1	66	1	66	n	0.00	0	17	0	17	n	0.02	1	40	1	40	n	0.02	1	41	1	41	n	0.00	0	22	0	22	n	0.00	0	40	0	40	n	0.00	0	10	0	10	n	0.00	0	17	0	17	n	0.05	1	18	1	18	n	0.13	2	13	2	13	y	ENSMUSG00000028641.17	P3h1	chr4	protein_coding	prolyl 3-hydroxylase 1
known_NIR_12876	chr4	119136408	119138767	-	119136396	119138767	A3SS	ENSMUST00000079644.13	known	0.03	18	668	18	668	y	0.04	29	727	29	727	y	0.06	52	835	52	835	y	0.04	22	599	22	599	y	0.03	31	870	31	870	y	0.04	21	453	21	453	y	0.04	34	925	34	925	y	0.04	20	435	20	435	y	0.03	21	631	21	631	y	0.02	27	1061	27	1061	y	0.03	28	797	28	797	y	0.02	19	886	19	886	y	ENSMUSG00000028639.15	Ybx1	chr4	protein_coding	Y box protein 1
known_NIR_12877	chr4	119139645	119142306	-	119139645	119139978	5pMXE	ENSMUST00000127737.2	known	0.00	0	516	0	516	n	0.00	1	526	1	526	n	0.00	0	645	0	645	n	0.00	0	581	0	581	n	0.00	0	690	0	690	n	0.00	0	371	0	371	n	0.00	3	727	3	727	y	0.00	0	383	0	383	n	0.00	1	481	1	481	n	0.00	0	768	0	768	n	0.01	5	608	5	608	y	0.01	4	779	4	779	y	ENSMUSG00000028639.15	Ybx1	chr4	protein_coding	Y box protein 1
known_NIR_12878	chr4	119139645	119142306	-	119139645;119140067	119139978;119142306	ES	ENSMUST00000079644.13	known	0.00	0	433.0	0	516;350	n	0.00	1	423.0	1	526;320	n	0.00	0	562.5	0	645;480	n	0.00	0	509.5	0	581;438	n	0.00	0	590.0	0	690;490	n	0.00	0	323.0	0	371;275	n	0.00	3	610.5	3	727;494	y	0.00	0	327.0	0	383;271	n	0.00	1	432.0	1	481;383	n	0.00	0	662.5	0	768;557	n	0.01	5	528.0	5	608;448	y	0.01	4	690.0	4	779;601	y	ENSMUSG00000028639.15	Ybx1	chr4	protein_coding	Y box protein 1
known_NIR_12879	chr4	119157380	119167956	-	119157399	119167956	A3SS	ENSMUST00000056458.14	known	0.89	33	4	33	4	y	0.96	51	2	51	2	y	0.93	26	2	26	2	y	0.79	22	6	22	6	y	0.91	43	4	43	4	y	0.74	17	6	17	6	y	0.84	42	8	42	8	y	0.90	18	2	18	2	y	0.83	24	5	24	5	y	0.83	43	9	43	9	y	0.86	31	5	31	5	y	0.79	44	12	44	12	y	ENSMUSG00000060288.14	Ppih	chr4	protein_coding	peptidyl prolyl isomerase H
known_NIR_12880	chr4	119165080	119167956	-	119157380	119167956	A3SS	ENSMUST00000106319.8	known	0.06	2	33	2	33	y	0.12	7	51	7	51	y	0.21	7	26	7	26	y	0.15	4	22	4	22	y	0.09	4	43	4	43	y	0.19	4	17	4	17	y	0.14	7	42	7	42	y	0.33	9	18	9	18	y	0.23	7	24	7	24	y	0.16	8	43	8	43	y	0.24	10	31	10	31	y	0.12	6	44	6	44	y	ENSMUSG00000060288.14	Ppih	chr4	protein_coding	peptidyl prolyl isomerase H
known_NIR_12881	chr4	119165080	119167956	-	119157399	119167956	A3SS	ENSMUST00000056458.14	known	0.33	2	4	2	4	n	0.78	7	2	7	2	n	0.78	7	2	7	2	n	0.40	4	6	4	6	y	0.50	4	4	4	4	n	0.40	4	6	4	6	y	0.47	7	8	7	8	y	0.82	9	2	9	2	y	0.58	7	5	7	5	y	0.47	8	9	8	9	y	0.67	10	5	10	5	y	0.33	6	12	6	12	y	ENSMUSG00000060288.14	Ppih	chr4	protein_coding	peptidyl prolyl isomerase H
known_NIR_12882	chr4	119168633	119168729	-	119168044	119168729	A3SS	ENSMUST00000056458.14	known	0.02	1	40	1	40	n	0.00	0	61	0	61	n	0.00	0	39	0	39	n	0.00	0	38	0	38	n	0.00	0	47	0	47	n	0.00	0	20	0	20	n	0.00	0	56	0	56	n	0.00	0	14	0	14	n	0.03	1	29	1	29	n	0.05	3	58	3	58	y	0.00	0	45	0	45	n	0.07	3	38	3	38	y	ENSMUSG00000060288.14	Ppih	chr4	protein_coding	peptidyl prolyl isomerase H
known_NIR_12883	chr4	119209849	119210267	-	119207071	119210267	A3SS	ENSMUST00000238759.2	known	0.67	14	7	14	7	y	0.85	11	2	11	2	y	1.00	2	0	2	0	n	0.21	3	11	3	11	y	0.44	4	5	4	5	n	0.50	2	2	2	2	n	0.62	8	5	8	5	y	0.57	4	3	4	3	n	0.73	8	3	8	3	y	0.75	18	6	18	6	y	0.82	14	3	14	3	y	0.57	12	9	12	9	y	ENSMUSG00000028637.17	Ccdc30	chr4	protein_coding	coiled-coil domain containing 30
known_NIR_12884	chr4	119209899	119210267	-	119209849	119210267	A3SS	ENSMUST00000143494.3	known	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.20	2	8	2	8	y	0.10	2	18	2	18	y	0.12	2	14	2	14	y	0.00	0	12	0	12	n	ENSMUSG00000028637.17	Ccdc30	chr4	protein_coding	coiled-coil domain containing 30
known_NIR_12885	chr4	119278880	119279043	-	119278880	119279488	A5SS	ENSMUST00000106316.2	known	1.00	81	0	81	0	n	0.99	71	1	71	1	n	1.00	63	0	63	0	n	1.00	76	0	76	0	n	0.96	82	3	82	3	y	1.00	30	0	30	0	n	1.00	97	0	97	0	n	1.00	43	0	43	0	n	1.00	61	0	61	0	n	0.99	96	1	96	1	n	0.94	60	4	60	4	y	1.00	65	0	65	0	n	ENSMUSG00000028636.15	Ppcs	chr4	protein_coding	phosphopantothenoylcysteine synthetase
known_NIR_12886	chr4	119390694	119390938	-	119390746	119390938	A3SS	ENSMUST00000079611.13	known	0.00	0	6	0	6	n	0.30	3	7	3	7	y	0.67	6	3	6	3	n	0.17	1	5	1	5	n	0.36	4	7	4	7	y	0.50	2	2	2	2	n	0.33	5	10	5	10	y	0.14	1	6	1	6	n	0.55	6	5	6	5	y	0.56	10	8	10	8	y	0.30	6	14	6	14	y	0.24	4	13	4	13	y	ENSMUSG00000087385.9	Frg2f1	chr4	protein_coding	FSHD region gene 2 family member 1
known_NIR_12887	chr4	119459689	119473705	+	119459689;119467288	119467187;119473705	ES	ENSMUST00000044564.15	known	0.52	6	5.5	6	7;4	y	0.73	8	3.0	8	4;2	y	0.38	5	8.0	5	8;8	y	0.38	4	6.5	4	6;7	y	0.42	7	9.5	7	8;11	y	0.36	2	3.5	2	1;6	n	0.36	2	3.5	2	5;2	n	0.38	4	6.5	4	7;6	y	0.67	5	2.5	5	2;3	y	0.59	5	3.5	5	3;4	y	0.62	4	2.5	4	2;3	n	0.18	1	4.5	1	3;6	n	ENSMUSG00000032998.17	Foxj3	chr4	protein_coding	forkhead box J3
known_NIR_12888	chr4	11962233	11966302	-	11962233	11965614	5pMXE	ENSMUST00000108301.8	known	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.82	9	2	9	2	y	0.00	0	1	0	1	n	0.57	4	3	4	3	n	1.00	2	0	2	0	n	0.88	7	1	7	1	n	1.00	4	0	4	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	n	ENSMUSG00000049225.15	Pdp1	chr4	protein_coding	pyruvate dehyrogenase phosphatase catalytic subunit 1
known_NIR_12889	chr4	120310972	120320272	+	120310972;120319352	120319210;120320272	ES	ENSMUST00000000087.13	known	0.15	1	5.5	1	4;7	n	0.00	0	4.5	0	5;4	n	0.16	2	10.5	2	11;10	y	0.07	1	13.0	1	6;20	n	0.19	2	8.5	2	9;8	y	0.00	0	6.0	0	5;7	n	0.00	0	12.0	0	8;16	n	0.20	2	8.0	2	9;7	y	0.33	2	4.0	2	6;2	y	0.20	3	12.0	3	11;13	y	0.13	1	6.5	1	6;7	n	0.29	4	10.0	4	7;13	y	ENSMUSG00000000085.17	Scmh1	chr4	protein_coding	sex comb on midleg homolog 1
known_NIR_12890	chr4	120310972	120320272	+	120319352	120320272	5pMXE	ENSMUST00000106298.10	known	0.12	1	7	1	7	n	0.00	0	4	0	4	n	0.17	2	10	2	10	y	0.05	1	20	1	20	n	0.20	2	8	2	8	y	0.00	0	7	0	7	n	0.00	0	16	0	16	n	0.22	2	7	2	7	n	0.50	2	2	2	2	n	0.19	3	13	3	13	y	0.12	1	7	1	7	n	0.24	4	13	4	13	y	ENSMUSG00000000085.17	Scmh1	chr4	protein_coding	sex comb on midleg homolog 1
known_NIR_12891	chr4	120310972;120313706	120313482;120319210	+	120310972	120319210	cassetteExon	ENSMUST00000000087.13	known	0.20	1.0	4	0;2	4	n	0.00	0.0	5	0;0	5	n	0.08	1.0	11	2;0	11	n	0.00	0.0	6	0;0	6	n	0.00	0.0	9	0;0	9	n	0.09	0.5	5	1;0	5	n	0.30	3.5	8	2;5	8	y	0.00	0.0	9	0;0	9	n	0.00	0.0	6	0;0	6	n	0.00	0.0	11	0;0	11	n	0.08	0.5	6	0;1	6	n	0.07	0.5	7	1;0	7	n	ENSMUSG00000000085.17	Scmh1	chr4	protein_coding	sex comb on midleg homolog 1
known_NIR_12892	chr4	120622569	120625290	-	120622569	120625923	A5SS	ENSMUST00000120779.8	known	0.09	6	60	6	60	y	0.03	2	59	2	59	y	0.00	0	51	0	51	n	0.00	0	44	0	44	n	0.00	0	50	0	50	n	0.00	0	50	0	50	n	0.01	1	70	1	70	n	0.00	0	39	0	39	n	0.02	1	43	1	43	n	0.02	2	95	2	95	y	0.05	3	55	3	55	y	0.00	0	67	0	67	n	ENSMUSG00000032897.18	Nfyc	chr4	protein_coding	nuclear transcription factor-Y gamma
known_NIR_12893	chr4	120630964	120638669	-	120630964;120636430	120636317;120638669	ES	ENSMUST00000120779.8	known	0.00	0	42.5	0	38;47	n	0.00	0	30.0	0	25;35	n	0.00	0	54.0	0	54;54	n	0.00	0	54.0	0	53;55	n	0.00	0	57.5	0	60;55	n	0.00	0	23.5	0	30;17	n	0.00	0	47.0	0	40;54	n	0.04	1	24.0	1	20;28	n	0.00	0	33.0	0	36;30	n	0.00	0	51.5	0	49;54	n	0.02	1	47.5	1	45;50	n	0.06	4	61.0	4	58;64	y	ENSMUSG00000032897.18	Nfyc	chr4	protein_coding	nuclear transcription factor-Y gamma
known_NIR_12894	chr4	120636430	120647574	-	120636430;120638740	120638669;120647574	ES	ENSMUST00000120779.8	known	0.00	0	55.0	0	47;63	n	0.00	0	32.5	0	35;30	n	0.02	1	58.5	1	54;63	n	0.00	0	51.5	0	55;48	n	0.11	6	49.0	6	55;43	y	0.00	0	17.5	0	17;18	n	0.02	1	51.0	1	54;48	n	0.00	0	30.0	0	28;32	n	0.06	2	32.0	2	30;34	y	0.00	0	51.5	0	54;49	n	0.00	0	48.0	0	50;46	n	0.02	1	58.5	1	64;53	n	ENSMUSG00000032897.18	Nfyc	chr4	protein_coding	nuclear transcription factor-Y gamma
known_NIR_12895	chr4	120647686	120682727	-	120647686	120672659	5pMXE	ENSMUST00000120779.8	known	1.00	36	0	36	0	n	1.00	26	0	26	0	n	1.00	33	0	33	0	n	0.93	28	2	28	2	y	1.00	46	0	46	0	n	0.96	24	1	24	1	n	0.97	35	1	35	1	n	1.00	10	0	10	0	n	1.00	17	0	17	0	n	0.95	38	2	38	2	y	0.95	21	1	21	1	n	0.91	32	3	32	3	y	ENSMUSG00000032897.18	Nfyc	chr4	protein_coding	nuclear transcription factor-Y gamma
known_NIR_12896	chr4	120779872	120781708	-	120779893	120781708	A3SS	ENSMUST00000030375.9	known	0.17	1	5	1	5	n	0.00	0	1	0	1	n	0.33	2	4	2	4	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.25	3	9	3	9	y	0.50	2	2	2	2	n	0.33	2	4	2	4	n	0.14	1	6	1	6	n	-	-	-	-	-	-	0.56	5	4	5	4	n	ENSMUSG00000028629.10	Exo5	chr4	protein_coding	exonuclease 5
known_NIR_12897	chr4	120944592;120946110	120946054;120952749	-	120944592	120952749	cassetteExon	ENSMUST00000058754.9	known	0.04	3.0	65	3;3	65	y	0.03	1.0	32	2;0	32	n	0.02	3.5	179	2;5	179	y	0.02	2.5	102	3;2	102	y	0.04	6.0	152	5;7	152	y	0.02	2.0	102	2;2	102	y	0.03	2.5	90	2;3	90	y	0.03	3.0	116	3;3	116	y	0.04	2.0	44	4;0	44	n	0.03	2.5	94	2;3	94	y	0.03	2.0	61	2;2	61	y	0.03	3.5	117	4;3	117	y	ENSMUSG00000043207.11	Zmpste24	chr4	protein_coding	zinc metallopeptidase, STE24
known_NIR_12898	chr4	12169058	12170984	-	12169033	12170984	A3SS	ENSMUST00000108285.9	known	0.04	2	52	2	52	y	0.00	0	65	0	65	n	0.00	0	52	0	52	n	0.00	0	67	0	67	n	0.05	3	60	3	60	y	0.00	0	38	0	38	n	0.01	1	67	1	67	n	0.00	0	30	0	30	n	0.00	0	65	0	65	n	0.00	0	58	0	58	n	0.02	1	49	1	49	n	0.00	0	58	0	58	n	ENSMUSG00000028218.20	Cibar1	chr4	protein_coding	CBY1 interacting BAR domain containing 1
known_NIR_12899	chr4	122766246	122779626	-	122766246	122779607	A5SS	ENSMUST00000069533.12	known	0.40	6	9	6	9	y	0.00	0	5	0	5	n	0.35	9	17	9	17	y	0.36	4	7	4	7	y	0.32	10	21	10	21	y	0.22	2	7	2	7	n	0.38	5	8	5	8	y	0.14	2	12	2	12	y	0.40	4	6	4	6	y	0.62	10	6	10	6	y	0.38	5	8	5	8	y	0.27	6	16	6	16	y	ENSMUSG00000028656.15	Cap1	chr4	protein_coding	CAP, adenylate cyclase-associated protein 1 (yeast)
known_NIR_12900	chr4	122766246	122779626	-	122766249	122779626	A3SS	ENSMUST00000106255.8	known	0.50	6	6	6	6	y	0.00	0	6	0	6	n	0.35	9	17	9	17	y	0.36	4	7	4	7	y	0.36	10	18	10	18	y	0.50	2	2	2	2	n	0.45	5	6	5	6	y	0.33	2	4	2	4	n	0.33	4	8	4	8	y	0.62	10	6	10	6	y	0.56	5	4	5	4	n	0.32	6	13	6	13	y	ENSMUSG00000028656.15	Cap1	chr4	protein_coding	CAP, adenylate cyclase-associated protein 1 (yeast)
known_NIR_12901	chr4	122766249	122779607	-	122766246	122779607	A3SS	ENSMUST00000069533.12	known	0.74	26	9	26	9	y	0.71	12	5	12	5	y	0.63	29	17	29	17	y	0.74	20	7	20	7	y	0.50	21	21	21	21	y	0.50	7	7	7	7	y	0.62	13	8	13	8	y	0.48	11	12	11	12	y	0.60	9	6	9	6	y	0.82	27	6	27	6	y	0.69	18	8	18	8	y	0.47	14	16	14	16	y	ENSMUSG00000028656.15	Cap1	chr4	protein_coding	CAP, adenylate cyclase-associated protein 1 (yeast)
known_NIR_12902	chr4	122766249	122779607	-	122766249	122779626	A5SS	ENSMUST00000106255.8	known	0.81	26	6	26	6	y	0.67	12	6	12	6	y	0.63	29	17	29	17	y	0.74	20	7	20	7	y	0.54	21	18	21	18	y	0.78	7	2	7	2	n	0.68	13	6	13	6	y	0.73	11	4	11	4	y	0.53	9	8	9	8	y	0.82	27	6	27	6	y	0.82	18	4	18	4	y	0.52	14	13	14	13	y	ENSMUSG00000028656.15	Cap1	chr4	protein_coding	CAP, adenylate cyclase-associated protein 1 (yeast)
known_NIR_12903	chr4	122853191	122854734	-	122853194	122854734	A3SS	ENSMUST00000152308.8	known	0.29	25	62	25	62	y	0.15	29	163	29	163	y	0.14	14	88	14	88	y	0.18	14	65	14	65	y	0.17	15	75	15	75	y	0.16	6	31	6	31	y	0.17	25	121	25	121	y	0.20	6	24	6	24	y	0.14	1	6	1	6	n	0.21	29	110	29	110	y	0.36	10	18	10	18	y	0.11	6	47	6	47	y	ENSMUSG00000028655.12	Mfsd2a	chr4	protein_coding	major facilitator superfamily domain containing 2A
known_NIR_12904	chr4	122942673	122943270	+	122942673;122943057	122942945;122943270	ES	ENSMUST00000102649.4	known	0.19	5	22.0	5	25;19	y	0.09	2	20.5	2	20;21	y	0.00	0	25.0	0	29;21	n	0.09	2	21.5	2	25;18	y	0.05	2	35.5	2	48;23	y	0.12	3	22.5	3	17;28	y	0.05	2	39.5	2	39;40	y	0.05	1	18.0	1	17;19	n	0.10	3	26.5	3	32;21	y	0.15	5	29.0	5	33;25	y	0.00	0	31.0	0	39;23	n	0.04	1	24.5	1	29;20	n	ENSMUSG00000028653.17	Trit1	chr4	protein_coding	tRNA isopentenyltransferase 1
known_NIR_12905	chr4	122943347	122946277	+	122943347;122945968	122945859;122946277	ES	ENSMUST00000102649.4	known	0.20	6	23.5	6	20;27	y	0.44	12	15.0	12	15;15	y	0.23	6	20.5	6	15;26	y	0.39	15	23.5	15	20;27	y	0.28	13	34.0	13	33;35	y	0.20	5	20.5	5	19;22	y	0.28	13	33.5	13	31;36	y	0.24	8	25.0	8	20;30	y	0.32	10	21.0	10	20;22	y	0.20	8	31.5	8	29;34	y	0.08	3	35.5	3	31;40	y	0.23	7	24.0	7	20;28	y	ENSMUSG00000028653.17	Trit1	chr4	protein_coding	tRNA isopentenyltransferase 1
known_NIR_12906	chr4	123183006	123183992	+	123182867	123183992	A5SS	ENSMUST00000106243.8	known	0.16	12	63	12	63	y	0.19	13	57	13	57	y	0.11	17	141	17	141	y	0.12	12	90	12	90	y	0.13	16	105	16	105	y	0.12	7	53	7	53	y	0.07	12	161	12	161	y	0.11	7	55	7	55	y	0.12	11	80	11	80	y	0.16	15	79	15	79	y	0.15	16	90	16	90	y	0.09	10	103	10	103	y	ENSMUSG00000011257.20	Pabpc4	chr4	protein_coding	poly(A) binding protein, cytoplasmic 4
known_NIR_12907	chr4	123189066	123189723	+	123189066;123189629	123189543;123189723	ES	ENSMUST00000106241.8	known	0.03	1	38.5	1	16;61	n	0.07	3	37.5	3	9;66	y	0.09	4	42.5	4	15;70	y	0.03	1	34.5	1	9;60	n	0.02	1	62.5	1	23;102	n	0.09	2	21.5	2	3;40	y	0.11	5	40.5	5	8;73	y	0.00	0	21.5	0	6;37	n	0.00	0	23.5	0	2;45	n	0.13	5	34.0	5	8;60	y	0.02	1	51.5	1	14;89	n	0.03	1	38.5	1	14;63	n	ENSMUSG00000011257.20	Pabpc4	chr4	protein_coding	poly(A) binding protein, cytoplasmic 4
known_NIR_12908	chr4	123189066	123189723	+	123189114	123189723	A5SS	ENSMUST00000106243.8	known	0.07	1	13	1	13	n	0.21	3	11	3	11	y	0.17	4	19	4	19	y	0.08	1	12	1	12	n	0.14	1	6	1	6	n	0.29	2	5	2	5	n	0.17	5	24	5	24	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.28	5	13	5	13	y	0.07	1	14	1	14	n	0.08	1	11	1	11	n	ENSMUSG00000011257.20	Pabpc4	chr4	protein_coding	poly(A) binding protein, cytoplasmic 4
known_NIR_12909	chr4	123189066	123189723	+	123189629	123189723	A5SS&ES	ENSMUST00000080178.13	known	0.02	1	61	1	61	n	0.04	3	66	3	66	y	0.05	4	70	4	70	y	0.02	1	60	1	60	n	0.01	1	102	1	102	n	0.05	2	40	2	40	y	0.06	5	73	5	73	y	0.00	0	37	0	37	n	0.00	0	45	0	45	n	0.08	5	60	5	60	y	0.01	1	89	1	89	n	0.02	1	63	1	63	n	ENSMUSG00000011257.20	Pabpc4	chr4	protein_coding	poly(A) binding protein, cytoplasmic 4
known_NIR_12910	chr4	123189114	123189543	+	123189066	123189543	A5SS	ENSMUST00000106241.8	known	0.72	42	16	42	16	y	0.83	44	9	44	9	y	0.80	59	15	59	15	y	0.84	46	9	46	9	y	0.73	62	23	62	23	y	0.90	28	3	28	3	y	0.86	51	8	51	8	y	0.88	42	6	42	6	y	0.95	35	2	35	2	y	0.86	49	8	49	8	y	0.78	50	14	50	14	y	0.80	55	14	55	14	y	ENSMUSG00000011257.20	Pabpc4	chr4	protein_coding	poly(A) binding protein, cytoplasmic 4
known_NIR_12911	chr4	123189114	123189723	+	123189629	123189723	A5SS&ES	ENSMUST00000106241.8	known	0.18	13	61	13	61	y	0.14	11	66	11	66	y	0.21	19	70	19	70	y	0.17	12	60	12	60	y	0.06	6	102	6	102	y	0.11	5	40	5	40	y	0.25	24	73	24	73	y	0.10	4	37	4	37	y	0.06	3	45	3	45	y	0.18	13	60	13	60	y	0.14	14	89	14	89	y	0.15	11	63	11	63	y	ENSMUSG00000011257.20	Pabpc4	chr4	protein_coding	poly(A) binding protein, cytoplasmic 4
known_NIR_12912	chr4	123189114;123189629	123189543;123189723	+	123189114	123189723	cassetteExon	ENSMUST00000106243.8	known	0.80	51.5	13	42;61	13	y	0.83	55.0	11	44;66	11	y	0.77	64.5	19	59;70	19	y	0.82	53.0	12	46;60	12	y	0.93	82.0	6	62;102	6	y	0.87	34.0	5	28;40	5	y	0.72	62.0	24	51;73	24	y	0.91	39.5	4	42;37	4	y	0.93	40.0	3	35;45	3	y	0.81	54.5	13	49;60	13	y	0.83	69.5	14	50;89	14	y	0.84	59.0	11	55;63	11	y	ENSMUSG00000011257.20	Pabpc4	chr4	protein_coding	poly(A) binding protein, cytoplasmic 4
known_NIR_12913	chr4	123245744	123248849	-	123245744;123248373	123248272;123248849	ES	ENSMUST00000123765.8	known	0.48	27	29.5	27	32;27	y	0.47	28	31.5	28	38;25	y	0.30	22	51.5	22	46;57	y	0.48	26	28.0	26	30;26	y	0.25	16	47.5	16	47;48	y	0.40	14	21.0	14	22;20	y	0.37	27	46.0	27	48;44	y	0.30	15	35.0	15	33;37	y	0.32	17	36.0	17	33;39	y	0.35	32	60.0	32	54;66	y	0.32	18	38.0	18	33;43	y	0.45	37	45.5	37	60;31	y	ENSMUSG00000028649.22	Macf1	chr4	protein_coding	microtubule-actin crosslinking factor 1
known_NIR_12914	chr4	123254820	123259066	-	123254820;123257867	123257850;123259066	ES	ENSMUST00000123765.8	known	0.27	14	38.5	14	36;41	y	0.17	8	40.0	8	38;42	y	0.12	9	64.0	9	67;61	y	0.25	13	39.0	13	39;39	y	0.34	24	46.5	24	43;50	y	0.09	3	31.0	3	29;33	y	0.12	7	50.0	7	51;49	y	0.08	3	35.5	3	33;38	y	0.18	9	41.5	9	41;42	y	0.12	7	50.0	7	46;54	y	0.17	9	45.5	9	44;47	y	0.21	13	47.5	13	50;45	y	ENSMUSG00000028649.22	Macf1	chr4	protein_coding	microtubule-actin crosslinking factor 1
known_NIR_12915	chr4	123279479;123280350	123280342;123281021	-	123279479	123281021	cassetteExon	ENSMUST00000097897.11	known	1.00	15.5	0	16;15	0	n	1.00	16.5	0	16;17	0	n	0.89	15.5	2	15;16	2	y	1.00	19.5	0	19;20	0	n	0.96	27.5	1	27;28	1	n	1.00	7.0	0	7;7	0	n	1.00	15.0	0	15;15	0	n	1.00	12.5	0	13;12	0	n	1.00	13.0	0	13;13	0	n	1.00	11.0	0	9;13	0	n	1.00	16.5	0	17;16	0	n	1.00	16.5	0	16;17	0	n	ENSMUSG00000028649.22	Macf1	chr4	protein_coding	microtubule-actin crosslinking factor 1
known_NIR_12916	chr4	123295705	123301231	-	123295705	123325791	A5SS	ENSMUST00000097897.11	known	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.18	4	18	4	18	y	0.07	1	13	1	13	n	0.08	2	23	2	23	y	0.00	0	16	0	16	n	0.28	5	13	5	13	y	0.00	0	12	0	12	n	0.22	2	7	2	7	n	0.19	3	13	3	13	y	0.00	0	9	0	9	n	0.05	1	18	1	18	n	ENSMUSG00000028649.22	Macf1	chr4	protein_coding	microtubule-actin crosslinking factor 1
known_NIR_12917	chr4	123334584	123338628	-	123334584;123335458	123335396;123338628	ES	ENSMUST00000097897.11	known	0.00	0	11.5	0	9;14	n	0.00	0	1.5	0	2;1	n	0.00	0	13.5	0	15;12	n	0.12	1	7.0	1	9;5	n	0.17	4	19.5	4	19;20	y	0.00	0	5.0	0	6;4	n	0.25	2	6.0	2	6;6	y	0.11	1	8.0	1	10;6	n	0.00	0	8.0	0	8;8	n	0.33	1	2.0	1	2;2	n	0.00	0	4.0	0	3;5	n	0.00	0	7.5	0	7;8	n	ENSMUSG00000028649.22	Macf1	chr4	protein_coding	microtubule-actin crosslinking factor 1
known_NIR_12918	chr4	123609874	123611901	-	123609874	123611906	A5SS	ENSMUST00000030401.14	known	0.00	1	416	1	416	n	0.01	3	450	3	450	y	0.01	3	393	3	393	y	0.01	4	495	4	495	y	0.01	7	551	7	551	y	0.01	2	258	2	258	y	0.00	3	617	3	617	y	0.01	3	279	3	279	y	0.01	5	410	5	410	y	0.02	10	627	10	627	y	0.01	5	520	5	520	y	0.02	11	521	11	521	y	ENSMUSG00000028648.14	Ndufs5	chr4	protein_coding	NADH:ubiquinone oxidoreductase core subunit S5
known_NIR_12919	chr4	123609874	123611906	-	123609874	123611816	A5SS	ENSMUST00000106206.8	known	0.99	416	6	416	6	y	1.00	450	2	450	2	y	1.00	393	0	393	0	n	1.00	495	1	495	1	n	1.00	551	2	551	2	y	1.00	258	1	258	1	n	1.00	617	1	617	1	n	1.00	279	0	279	0	n	0.99	410	3	410	3	y	1.00	627	0	627	0	n	1.00	520	2	520	2	y	1.00	521	1	521	1	n	ENSMUSG00000028648.14	Ndufs5	chr4	protein_coding	NADH:ubiquinone oxidoreductase core subunit S5
known_NIR_12920	chr4	123813011	123813642	+	123811560	123813642	A5SS	ENSMUST00000030399.7	known	0.00	0	34	0	34	n	0.04	1	27	1	27	n	0.00	0	73	0	73	n	0.03	2	59	2	59	y	0.02	1	57	1	57	n	0.00	0	41	0	41	n	0.00	0	53	0	53	n	0.03	1	34	1	34	n	0.00	0	40	0	40	n	0.00	0	63	0	63	n	0.00	0	30	0	30	n	0.00	0	70	0	70	n	ENSMUSG00000028646.17	Rragc	chr4	protein_coding	Ras-related GTP binding C
known_NIR_12921	chr4	123814234	123814744	+	123813845	123814744	A5SS	ENSMUST00000030399.7	known	0.00	0	73	0	73	n	0.04	2	51	2	51	y	0.00	0	142	0	142	n	0.02	2	87	2	87	y	0.02	2	111	2	111	y	0.00	0	48	0	48	n	0.00	0	97	0	97	n	0.00	0	68	0	68	n	0.03	2	73	2	73	y	0.02	2	124	2	124	y	0.03	2	70	2	70	y	0.01	1	116	1	116	n	ENSMUSG00000028646.17	Rragc	chr4	protein_coding	Ras-related GTP binding C
known_NIR_12922	chr4	124635709	124636235	+	124635709	124636257	A3SS	ENSMUST00000094782.10	known	0.25	1	3	1	3	n	0.00	0	7	0	7	n	0.20	3	12	3	12	y	0.19	3	13	3	13	y	0.08	2	24	2	24	y	0.11	2	16	2	16	y	0.06	1	15	1	15	n	0.12	2	15	2	15	y	0.15	2	11	2	11	y	0.05	1	18	1	18	n	0.00	0	5	0	5	n	0.14	2	12	2	12	y	ENSMUSG00000028894.19	Inpp5b	chr4	protein_coding	inositol polyphosphate-5-phosphatase B
known_NIR_12923	chr4	124669499	124671134	+	124645485	124671134	A5SS	ENSMUST00000094782.10	known	0.12	2	14	2	14	y	0.00	0	22	0	22	n	0.03	1	33	1	33	n	0.07	2	26	2	26	y	0.00	0	50	0	50	n	0.08	2	24	2	24	y	0.00	0	38	0	38	n	0.00	0	21	0	21	n	0.00	0	24	0	24	n	0.13	5	34	5	34	y	0.00	0	17	0	17	n	0.06	2	31	2	31	y	ENSMUSG00000028894.19	Inpp5b	chr4	protein_coding	inositol polyphosphate-5-phosphatase B
known_NIR_12924	chr4	124687202;124687447	124687395;124689149	+	124687202	124689149	cassetteExon	ENSMUST00000094782.10	known	0.02	1.0	64	2;0	64	n	0.02	1.0	63	2;0	63	n	0.00	0.0	54	0;0	54	n	0.00	0.0	73	0;0	73	n	0.02	2.0	90	4;0	90	n	0.00	0.0	24	0;0	24	n	0.03	2.5	83	3;2	83	y	0.00	0.0	58	0;0	58	n	0.00	0.0	58	0;0	58	n	0.02	1.5	85	1;2	85	n	0.00	0.0	71	0;0	71	n	0.01	1.0	76	1;1	76	n	ENSMUSG00000028894.19	Inpp5b	chr4	protein_coding	inositol polyphosphate-5-phosphatase B
known_NIR_12925	chr4	124744226	124744315	-	124744226	124744442	A5SS	ENSMUST00000163946.2	known	0.00	0	21	0	21	n	0.00	0	18	0	18	n	0.05	3	55	3	55	y	0.00	0	30	0	30	n	0.09	4	40	4	40	y	0.00	0	37	0	37	n	0.03	1	29	1	29	n	0.00	0	19	0	19	n	0.15	3	17	3	17	y	0.00	0	26	0	26	n	0.04	1	24	1	24	n	0.00	0	24	0	24	n	ENSMUSG00000078570.11	1110065P20Rik	chr4	protein_coding	RIKEN cDNA 1110065P20 gene
known_NIR_12926	chr4	124744226	124744373	-	124744226	124744315	A5SS	ENSMUST00000106190.10	known	1.00	3	0	3	0	n	1.00	8	0	8	0	n	0.82	14	3	14	3	y	1.00	2	0	2	0	n	0.71	10	4	10	4	y	1.00	11	0	11	0	n	0.83	5	1	5	1	n	1.00	7	0	7	0	n	0.62	5	3	5	3	n	1.00	6	0	6	0	n	0.89	8	1	8	1	n	1.00	5	0	5	0	n	ENSMUSG00000078570.11	1110065P20Rik	chr4	protein_coding	RIKEN cDNA 1110065P20 gene
known_NIR_12927	chr4	124744226	124744373	-	124744226	124744442	A5SS	ENSMUST00000163946.2	known	0.12	3	21	3	21	y	0.31	8	18	8	18	y	0.20	14	55	14	55	y	0.06	2	30	2	30	y	0.20	10	40	10	40	y	0.23	11	37	11	37	y	0.15	5	29	5	29	y	0.27	7	19	7	19	y	0.23	5	17	5	17	y	0.19	6	26	6	26	y	0.25	8	24	8	24	y	0.17	5	24	5	24	y	ENSMUSG00000078570.11	1110065P20Rik	chr4	protein_coding	RIKEN cDNA 1110065P20 gene
known_NIR_12928	chr4	124960745	124961800	+	124960745	124961883	A3SS	ENSMUST00000052183.7	known	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.05	1	21	1	21	n	0.00	0	21	0	21	n	0.09	2	20	2	20	y	0.00	0	14	0	14	n	0.07	2	25	2	25	y	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	24	0	24	n	0.05	1	19	1	19	n	0.07	1	13	1	13	n	ENSMUSG00000050213.7	Snip1	chr4	protein_coding	Smad nuclear interacting protein 1
known_NIR_12929	chr4	124996824	124997223	+	124996824	125001445	A3SS	ENSMUST00000184205.8	known	0.08	1	11	1	11	n	0.38	5	8	5	8	y	0.25	3	9	3	9	y	0.00	0	11	0	11	n	0.35	7	13	7	13	y	0.64	7	4	7	4	y	0.24	5	16	5	16	y	0.57	4	3	4	3	n	0.33	3	6	3	6	n	0.29	5	12	5	12	y	0.33	8	16	8	16	y	0.18	3	14	3	14	y	ENSMUSG00000028863.14	Meaf6	chr4	protein_coding	MYST/Esa1-associated factor 6
known_NIR_12930	chr4	124996824	124997223	+	124996824	125002116	A3SS	ENSMUST00000154689.8	known	0.50	1	1	1	1	n	0.83	5	1	5	1	n	0.60	3	2	3	2	n	0.00	0	2	0	2	n	0.64	7	4	7	4	y	0.78	7	2	7	2	n	0.62	5	3	5	3	n	0.50	4	4	4	4	n	0.33	3	6	3	6	n	1.00	5	0	5	0	n	0.80	8	2	8	2	y	0.50	3	3	3	3	n	ENSMUSG00000028863.14	Meaf6	chr4	protein_coding	MYST/Esa1-associated factor 6
known_NIR_12931	chr4	124996824	124997223	+	124996824	125003370	A3SS	ENSMUST00000055213.11	known	0.25	1	3	1	3	n	0.50	5	5	5	5	y	0.38	3	5	3	5	n	0.00	0	8	0	8	n	0.50	7	7	7	7	y	0.70	7	3	7	3	y	0.50	5	5	5	5	y	0.36	4	7	4	7	y	0.50	3	3	3	3	n	0.38	5	8	5	8	y	0.53	8	7	8	7	y	0.27	3	8	3	8	y	ENSMUSG00000028863.14	Meaf6	chr4	protein_coding	MYST/Esa1-associated factor 6
known_NIR_12932	chr4	124996824	125001445	+	124996824	125003370	A3SS	ENSMUST00000055213.11	known	0.79	11	3	11	3	y	0.62	8	5	8	5	y	0.64	9	5	9	5	y	0.58	11	8	11	8	y	0.65	13	7	13	7	y	0.57	4	3	4	3	n	0.76	16	5	16	5	y	0.30	3	7	3	7	y	0.67	6	3	6	3	n	0.60	12	8	12	8	y	0.70	16	7	16	7	y	0.64	14	8	14	8	y	ENSMUSG00000028863.14	Meaf6	chr4	protein_coding	MYST/Esa1-associated factor 6
known_NIR_12933	chr4	124996824	125003370	+	124996824	125002116	A3SS&ES	ENSMUST00000154689.8	known	0.75	3	1	3	1	n	0.83	5	1	5	1	n	0.71	5	2	5	2	n	0.80	8	2	8	2	y	0.64	7	4	7	4	y	0.60	3	2	3	2	n	0.62	5	3	5	3	n	0.64	7	4	7	4	y	0.33	3	6	3	6	n	1.00	8	0	8	0	n	0.78	7	2	7	2	n	0.73	8	3	8	3	y	ENSMUSG00000028863.14	Meaf6	chr4	protein_coding	MYST/Esa1-associated factor 6
known_NIR_12934	chr4	124996824;125001502	125001445;125002116	+	124996824	125002116	cassetteExon	ENSMUST00000154689.8	known	0.93	12.5	1	11;14	1	n	0.92	12.0	1	8;16	1	n	0.78	7.0	2	9;5	2	y	0.85	11.0	2	11;11	2	y	0.80	16.0	4	13;19	4	y	0.80	8.0	2	4;12	2	y	0.84	16.0	3	16;16	3	y	0.47	3.5	4	3;4	4	y	0.57	8.0	6	6;10	6	y	1.00	13.0	0	12;14	0	n	0.89	16.5	2	16;17	2	y	0.86	18.0	3	14;22	3	y	ENSMUSG00000028863.14	Meaf6	chr4	protein_coding	MYST/Esa1-associated factor 6
known_NIR_12935	chr4	125990500	125991622	+	125990602	125991622	A5SS	ENSMUST00000055575.8	known	0.00	0	69	0	69	n	0.02	1	61	1	61	n	0.04	3	73	3	73	y	0.04	2	52	2	52	y	0.00	0	69	0	69	n	0.05	1	20	1	20	n	0.03	2	67	2	67	y	0.04	2	52	2	52	y	0.04	2	48	2	48	y	0.01	1	81	1	81	n	0.01	1	72	1	72	n	0.00	0	80	0	80	n	ENSMUSG00000050188.9	Lsm10	chr4	protein_coding	U7 snRNP-specific Sm-like protein LSM10
known_NIR_12936	chr4	125997939	126017509	+	126012255	126017509	5pMXE	ENSMUST00000139188.2	known	0.65	15	8	15	8	y	0.74	14	5	14	5	y	0.80	16	4	16	4	y	0.91	20	2	20	2	y	0.87	26	4	26	4	y	0.75	15	5	15	5	y	0.96	24	1	24	1	n	0.90	18	2	18	2	y	1.00	17	0	17	0	n	0.86	24	4	24	4	y	0.77	17	5	17	5	y	0.95	18	1	18	1	n	ENSMUSG00000042608.16	Stk40	chr4	protein_coding	serine/threonine kinase 40
known_NIR_12937	chr4	125997939;126012133	126012067;126017509	+	125997939	126017509	cassetteExon	ENSMUST00000094761.11	known	0.21	4.0	15	8;0	15	n	0.10	1.5	14	1;2	14	n	0.24	5.0	16	6;4	16	y	0.15	3.5	20	6;1	20	n	0.02	0.5	26	0;1	26	n	0.00	0.0	15	0;0	15	n	0.17	5.0	24	7;3	24	y	0.00	0.0	18	0;0	18	n	0.13	2.5	17	2;3	17	y	0.11	3.0	24	3;3	24	y	0.03	0.5	17	1;0	17	n	0.16	3.5	18	4;3	18	y	ENSMUSG00000042608.16	Stk40	chr4	protein_coding	serine/threonine kinase 40
known_NIR_12938	chr4	125997939;126012255	126012067;126017509	+	125997939	126017509	cassetteExon	ENSMUST00000094761.11	known	0.35	8.0	15	8;8	15	y	0.18	3.0	14	1;5	14	n	0.24	5.0	16	6;4	16	y	0.17	4.0	20	6;2	20	y	0.07	2.0	26	0;4	26	n	0.14	2.5	15	0;5	15	n	0.14	4.0	24	7;1	24	n	0.05	1.0	18	0;2	18	n	0.06	1.0	17	2;0	17	n	0.13	3.5	24	3;4	24	y	0.15	3.0	17	1;5	17	n	0.12	2.5	18	4;1	18	n	ENSMUSG00000042608.16	Stk40	chr4	protein_coding	serine/threonine kinase 40
known_NIR_12939	chr4	126042424	126042744	+	126042424	126042677	A3SS	ENSMUST00000052876.3	known	0.85	11	2	11	2	y	0.64	9	5	9	5	y	0.83	5	1	5	1	n	0.86	6	1	6	1	n	0.95	18	1	18	1	n	1.00	5	0	5	0	n	0.67	14	7	14	7	y	0.57	4	3	4	3	n	1.00	8	0	8	0	n	0.88	7	1	7	1	n	0.85	17	3	17	3	y	0.62	5	3	5	3	n	ENSMUSG00000050212.5	Eva1b	chr4	protein_coding	eva-1 homolog B (C. elegans)
known_NIR_12940	chr4	126065674;126067122	126066930;126067237	-	126065674	126067237	cassetteExon	ENSMUST00000080919.12	known	0.25	27.0	80	40;14	80	y	0.26	23.0	65	32;14	65	y	0.09	15.0	151	18;12	151	y	0.19	20.5	85	27;14	85	y	0.20	33.0	135	31;35	135	y	0.10	8.5	74	10;7	74	y	0.14	23.5	145	28;19	145	y	0.14	15.5	99	17;14	99	y	0.09	10.5	107	13;8	107	y	0.16	30.0	152	33;27	152	y	0.10	10.0	89	17;3	89	y	0.14	29.0	172	33;25	172	y	ENSMUSG00000043962.17	Thrap3	chr4	protein_coding	thyroid hormone receptor associated protein 3
known_NIR_12941	chr4	126070149	126072168	-	126070149	126071655	A5SS	ENSMUST00000080919.12	known	0.01	1	89	1	89	n	0.00	0	75	0	75	n	0.01	1	152	1	152	n	0.02	2	86	2	86	y	0.00	0	169	0	169	n	0.03	3	87	3	87	y	0.02	2	117	2	117	y	0.00	0	74	0	74	n	0.02	2	82	2	82	y	0.00	0	123	0	123	n	0.00	0	104	0	104	n	0.00	0	123	0	123	n	ENSMUSG00000043962.17	Thrap3	chr4	protein_coding	thyroid hormone receptor associated protein 3
known_NIR_12942	chr4	126072794	126073705	-	126072350	126073705	A3SS	ENSMUST00000080919.12	known	0.00	0	39	0	39	n	0.00	0	38	0	38	n	0.00	0	94	0	94	n	0.00	0	48	0	48	n	0.00	0	104	0	104	n	0.00	0	60	0	60	n	0.00	0	94	0	94	n	0.00	0	50	0	50	n	0.03	2	62	2	62	y	0.00	0	86	0	86	n	0.00	0	56	0	56	n	0.00	0	88	0	88	n	ENSMUSG00000043962.17	Thrap3	chr4	protein_coding	thyroid hormone receptor associated protein 3
known_NIR_12943	chr4	126074607;126078935	126078724;126080228	-	126074607	126080228	cassetteExon	ENSMUST00000080919.12	known	0.00	0.0	38	0;0	38	n	0.06	2.0	33	3;1	33	n	0.07	5.5	74	5;6	74	y	0.04	3.0	65	6;0	65	n	0.05	4.5	89	9;0	89	n	0.07	2.5	32	4;1	32	n	0.01	0.5	74	1;0	74	n	0.00	0.0	49	0;0	49	n	0.02	1.0	47	2;0	47	n	0.00	0.0	75	0;0	75	n	0.05	2.5	53	5;0	53	n	0.02	1.5	80	3;0	80	n	ENSMUSG00000043962.17	Thrap3	chr4	protein_coding	thyroid hormone receptor associated protein 3
known_NIR_12944	chr4	126080381	126095916	-	126080381	126088110	5pMXE	ENSMUST00000123008.8	known	0.00	0	29	0	29	n	0.00	0	18	0	18	n	0.00	0	40	0	40	n	0.00	0	26	0	26	n	0.00	0	50	0	50	n	0.02	1	40	1	40	n	0.07	3	39	3	39	y	0.00	0	39	0	39	n	0.00	0	9	0	9	n	0.03	1	36	1	36	n	0.00	0	39	0	39	n	0.00	0	39	0	39	n	ENSMUSG00000043962.17	Thrap3	chr4	protein_coding	thyroid hormone receptor associated protein 3
known_NIR_12945	chr4	126080381	126095916	-	126080381	126096363	A5SS	ENSMUST00000080919.12	known	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	32	0	32	n	0.00	0	18	0	18	n	0.00	0	25	0	25	n	0.05	1	18	1	18	n	0.10	3	27	3	27	y	0.00	0	17	0	17	n	0.00	0	13	0	13	n	0.03	1	35	1	35	n	0.00	0	12	0	12	n	0.00	0	19	0	19	n	ENSMUSG00000043962.17	Thrap3	chr4	protein_coding	thyroid hormone receptor associated protein 3
known_NIR_12946	chr4	126080381	126096363	-	126080381	126088110	5pMXE	ENSMUST00000123008.8	known	0.26	10	29	10	29	y	0.33	9	18	9	18	y	0.44	32	40	32	40	y	0.41	18	26	18	26	y	0.33	25	50	25	50	y	0.31	18	40	18	40	y	0.41	27	39	27	39	y	0.30	17	39	17	39	y	0.59	13	9	13	9	y	0.49	35	36	35	36	y	0.24	12	39	12	39	y	0.33	19	39	19	39	y	ENSMUSG00000043962.17	Thrap3	chr4	protein_coding	thyroid hormone receptor associated protein 3
known_NIR_12947	chr4	126080381	126096363	-	126088197	126096363	3pMXE	ENSMUST00000124327.2	known	0.77	10	3	10	3	y	0.45	9	11	9	11	y	0.58	32	23	32	23	y	0.56	18	14	18	14	y	0.44	25	32	25	32	y	0.50	18	18	18	18	y	0.57	27	20	27	20	y	0.59	17	12	17	12	y	0.48	13	14	13	14	y	0.71	35	14	35	14	y	0.40	12	18	12	18	y	0.44	19	24	19	24	y	ENSMUSG00000043962.17	Thrap3	chr4	protein_coding	thyroid hormone receptor associated protein 3
known_NIR_12948	chr4	126080381;126088197	126088110;126096363	-	126080381	126096363	cassetteExon	ENSMUST00000080919.12	known	0.62	16.0	10	29;3	10	y	0.62	14.5	9	18;11	9	y	0.50	31.5	32	40;23	32	y	0.53	20.0	18	26;14	18	y	0.62	41.0	25	50;32	25	y	0.62	29.0	18	40;18	18	y	0.52	29.5	27	39;20	27	y	0.60	25.5	17	39;12	17	y	0.47	11.5	13	9;14	13	y	0.42	25.0	35	36;14	35	y	0.70	28.5	12	39;18	12	y	0.62	31.5	19	39;24	19	y	ENSMUSG00000043962.17	Thrap3	chr4	protein_coding	thyroid hormone receptor associated protein 3
known_NIR_12949	chr4	126088197	126096363	-	126088197;126094800	126094739;126096363	ES	ENSMUST00000169403.8	known	0.75	3	1.0	3	0;2	n	0.96	11	0.5	11	1;0	n	0.90	23	2.5	23	3;2	y	1.00	14	0.0	14	0;0	n	0.98	32	0.5	32	1;0	n	1.00	18	0.0	18	0;0	n	0.95	20	1.0	20	2;0	n	0.96	12	0.5	12	1;0	n	1.00	14	0.0	14	0;0	n	1.00	14	0.0	14	0;0	n	0.97	18	0.5	18	1;0	n	1.00	24	0.0	24	0;0	n	ENSMUSG00000043962.17	Thrap3	chr4	protein_coding	thyroid hormone receptor associated protein 3
known_NIR_12950	chr4	126131071	126133825	-	126131071	126132315	A5SS&ES	ENSMUST00000122129.8	known	0.52	15	14	15	14	y	0.49	23	24	23	24	y	0.47	22	25	22	25	y	0.40	17	25	17	25	y	0.41	36	51	36	51	y	0.45	23	28	23	28	y	0.48	26	28	26	28	y	0.35	12	22	12	22	y	0.48	15	16	15	16	y	0.41	17	24	17	24	y	0.31	9	20	9	20	y	0.32	14	30	14	30	y	ENSMUSG00000028849.18	Map7d1	chr4	protein_coding	MAP7 domain containing 1
known_NIR_12951	chr4	126131071	126133825	-	126131071	126133816	A5SS	ENSMUST00000125981.8	known	0.19	15	62	15	62	y	0.36	23	41	23	41	y	0.18	22	101	22	101	y	0.22	17	61	17	61	y	0.27	36	98	36	98	y	0.40	23	34	23	34	y	0.25	26	76	26	76	y	0.24	12	39	12	39	y	0.25	15	44	15	44	y	0.21	17	65	17	65	y	0.15	9	53	9	53	y	0.21	14	53	14	53	y	ENSMUSG00000028849.18	Map7d1	chr4	protein_coding	MAP7 domain containing 1
known_NIR_12952	chr4	126131071;126132425	126132315;126133816	-	126131071	126133816	cassetteExon	ENSMUST00000125981.8	known	0.21	16.5	62	14;19	62	y	0.36	23.5	41	24;23	41	y	0.22	28.5	101	25;32	101	y	0.29	25.0	61	25;25	61	y	0.31	45.0	98	51;39	98	y	0.43	25.5	34	28;23	34	y	0.25	25.0	76	28;22	76	y	0.30	17.0	39	22;12	39	y	0.23	13.5	44	16;11	44	y	0.29	26.0	65	24;28	65	y	0.26	18.5	53	20;17	53	y	0.32	24.5	53	30;19	53	y	ENSMUSG00000028849.18	Map7d1	chr4	protein_coding	MAP7 domain containing 1
known_NIR_12953	chr4	126212288	126214755	-	126212288	126215235	A5SS	ENSMUST00000102617.5	known	0.00	0	25	0	25	n	0.00	0	28	0	28	n	0.10	3	27	3	27	y	0.00	0	23	0	23	n	0.00	0	47	0	47	n	0.00	0	12	0	12	n	0.00	0	26	0	26	n	0.00	0	27	0	27	n	0.00	0	32	0	32	n	0.03	1	36	1	36	n	0.00	0	31	0	31	n	0.00	0	41	0	41	n	ENSMUSG00000042558.17	Adprs	chr4	protein_coding	ADP-ribosylserine hydrolase
known_NIR_12954	chr4	126347484	126347610	-	126347484	126347619	A5SS	ENSMUST00000239428.2	known	0.14	2	12	2	12	y	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.05	1	20	1	20	n	0.00	0	10	0	10	n	0.06	1	16	1	16	n	0.00	0	13	0	13	n	0.08	1	11	1	11	n	0.16	5	26	5	26	y	0.00	0	9	0	9	n	0.00	0	25	0	25	n	ENSMUSG00000041530.18	Ago1	chr4	protein_coding	argonaute RISC catalytic subunit 1
known_NIR_12955	chr4	126354378	126354699	-	126354296	126354699	A3SS	ENSMUST00000239428.2	known	0.12	1	7	1	7	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.22	2	7	2	7	n	0.15	2	11	2	11	y	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.07	1	13	1	13	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.33	1	2	1	2	n	0.00	0	16	0	16	n	ENSMUSG00000041530.18	Ago1	chr4	protein_coding	argonaute RISC catalytic subunit 1
known_NIR_12956	chr4	126503805	126505469	+	126503805	126505474	A3SS	ENSMUST00000097886.4	known	1.00	4	0	4	0	n	0.60	3	2	3	2	n	1.00	5	0	5	0	n	0.82	9	2	9	2	y	0.86	12	2	12	2	y	0.86	6	1	6	1	n	0.93	13	1	13	1	n	0.50	2	2	2	2	n	1.00	5	0	5	0	n	0.56	5	4	5	4	n	0.86	6	1	6	1	n	0.93	14	1	14	1	n	ENSMUSG00000073755.5	5730409E04Rik	chr4	protein_coding	RIKEN cDNA 5730409E04Rik gene
known_NIR_12957	chr4	126645874	126647118	-	126645874	126646764	A5SS	ENSMUST00000030637.14	known	0.18	2	9	2	9	y	0.44	4	5	4	5	n	0.05	1	19	1	19	n	0.29	2	5	2	5	n	0.17	2	10	2	10	y	0.40	4	6	4	6	y	0.08	1	12	1	12	n	0.00	0	9	0	9	n	0.50	1	1	1	1	n	0.25	3	9	3	9	y	0.36	4	7	4	7	y	0.08	1	11	1	11	n	ENSMUSG00000028833.14	Ncdn	chr4	protein_coding	neurochondrin
known_NIR_12958	chr4	126647638	126650692	+	126647788	126650692	A5SS	ENSMUST00000047431.11	known	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	45	0	45	n	0.00	0	19	0	19	n	0.02	1	45	1	45	n	0.03	1	28	1	28	n	0.03	1	33	1	33	n	0.00	0	29	0	29	n	0.00	0	15	0	15	n	0.06	2	29	2	29	y	0.08	1	11	1	11	n	0.00	0	21	0	21	n	ENSMUSG00000028830.15	AU040320	chr4	protein_coding	expressed sequence AU040320
known_NIR_12959	chr4	126647788	126650692	+	126647455	126650692	A5SS	ENSMUST00000102608.10	known	1.00	14	0	14	0	n	1.00	9	0	9	0	n	0.96	45	2	45	2	y	1.00	19	0	19	0	n	0.98	45	1	45	1	n	0.97	28	1	28	1	n	1.00	33	0	33	0	n	0.94	29	2	29	2	y	1.00	15	0	15	0	n	1.00	29	0	29	0	n	1.00	11	0	11	0	n	0.95	21	1	21	1	n	ENSMUSG00000028830.15	AU040320	chr4	protein_coding	expressed sequence AU040320
known_NIR_12960	chr4	126647788	126650692	+	126647560	126650692	A5SS	ENSMUST00000154640.8	known	0.88	14	2	14	2	y	1.00	9	0	9	0	n	0.98	45	1	45	1	n	1.00	19	0	19	0	n	0.98	45	1	45	1	n	1.00	28	0	28	0	n	1.00	33	0	33	0	n	1.00	29	0	29	0	n	1.00	15	0	15	0	n	1.00	29	0	29	0	n	1.00	11	0	11	0	n	1.00	21	0	21	0	n	ENSMUSG00000028830.15	AU040320	chr4	protein_coding	expressed sequence AU040320
known_NIR_12961	chr4	126650861	126682074	+	126650861	126685568	A3SS	ENSMUST00000148935.8	known	0.07	2	27	2	27	y	0.00	0	24	0	24	n	0.00	0	60	0	60	n	0.00	0	42	0	42	n	0.06	3	47	3	47	y	0.00	0	22	0	22	n	0.00	0	34	0	34	n	0.00	0	32	0	32	n	0.00	0	20	0	20	n	0.00	0	39	0	39	n	0.06	1	15	1	15	n	0.04	1	26	1	26	n	ENSMUSG00000028830.15	AU040320	chr4	protein_coding	expressed sequence AU040320
known_NIR_12962	chr4	126800429	126804583	-	126800429;126801029	126800879;126804583	ES	ENSMUST00000106108.9	known	0.00	0	1.0	0	0;2	n	0.00	0	1.5	0	3;0	n	0.17	1	5.0	1	3;7	n	0.00	0	2.0	0	2;2	n	0.22	2	7.0	2	8;6	y	0.25	1	3.0	1	2;4	n	0.00	0	3.5	0	1;6	n	0.00	0	3.5	0	5;2	n	0.33	1	2.0	1	1;3	n	0.00	0	1.5	0	2;1	n	0.00	0	1.5	0	1;2	n	0.00	0	10.0	0	6;14	n	ENSMUSG00000042446.17	Zmym4	chr4	protein_coding	zinc finger, MYM-type 4
known_NIR_12963	chr4	126917361	126917443	+	126917361	126917467	A3SS	ENSMUST00000030623.8	known	0.02	2	111	2	111	y	0.00	0	122	0	122	n	0.00	1	238	1	238	n	0.00	0	171	0	171	n	0.00	0	180	0	180	n	0.00	0	99	0	99	n	0.00	0	184	0	184	n	0.00	0	129	0	129	n	0.00	0	126	0	126	n	0.00	0	202	0	202	n	0.00	0	150	0	150	n	0.00	1	207	1	207	n	ENSMUSG00000028820.14	Sfpq	chr4	protein_coding	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)
known_NIR_12964	chr4	126921311	126929601	+	126921311	126923620	3pMXE	ENSMUST00000030623.8	known	0.09	11	112	11	112	y	0.07	11	136	11	136	y	0.04	7	150	7	150	y	0.06	8	120	8	120	y	0.16	26	141	26	141	y	0.17	15	74	15	74	y	0.14	22	131	22	131	y	0.11	10	79	10	79	y	0.17	17	85	17	85	y	0.05	7	144	7	144	y	0.16	23	125	23	125	y	0.12	18	134	18	134	y	ENSMUSG00000028820.14	Sfpq	chr4	protein_coding	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)
known_NIR_12965	chr4	126927638	126929601	+	126921311	126929601	A5SS	ENSMUST00000146285.8	known	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	26	0	26	n	0.00	0	15	0	15	n	0.08	2	22	2	22	y	0.00	0	10	0	10	n	0.00	0	17	0	17	n	0.00	0	7	0	7	n	0.00	0	23	0	23	n	0.00	0	18	0	18	n	ENSMUSG00000028820.14	Sfpq	chr4	protein_coding	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)
known_NIR_12966	chr4	126930442	126941483	+	126930442	126930725	3pMXE	ENSMUST00000146285.8	known	0.00	0	61	0	61	n	0.02	1	63	1	63	n	0.00	0	60	0	60	n	0.03	1	35	1	35	n	0.06	5	76	5	76	y	0.00	0	25	0	25	n	0.03	2	65	2	65	y	0.00	0	28	0	28	n	0.00	0	57	0	57	n	0.04	2	44	2	44	y	0.00	0	50	0	50	n	0.02	1	53	1	53	n	ENSMUSG00000028820.14	Sfpq	chr4	protein_coding	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)
known_NIR_12967	chr4	127019986	127021612	+	127018273	127021612	A5SS	ENSMUST00000106097.9	known	0.92	22	2	22	2	y	0.96	25	1	25	1	n	1.00	23	0	23	0	n	0.93	25	2	25	2	y	1.00	29	0	29	0	n	1.00	22	0	22	0	n	1.00	42	0	42	0	n	1.00	23	0	23	0	n	1.00	15	0	15	0	n	1.00	30	0	30	0	n	1.00	19	0	19	0	n	0.97	34	1	34	1	n	ENSMUSG00000070737.11	Tmem35b	chr4	protein_coding	transmembrane protein 35B
known_NIR_12968	chr4	128621663	128637147	+	128617506	128637147	A5SS	ENSMUST00000030588.13	known	0.90	9	1	9	1	n	1.00	9	0	9	0	n	0.96	26	1	26	1	n	0.92	11	1	11	1	n	0.92	23	2	23	2	y	1.00	20	0	20	0	n	0.81	13	3	13	3	y	0.83	15	3	15	3	y	0.93	14	1	14	1	n	1.00	17	0	17	0	n	1.00	21	0	21	0	n	0.83	10	2	10	2	y	ENSMUSG00000028796.18	Phc2	chr4	protein_coding	polyhomeotic 2
known_NIR_12969	chr4	128621663	128637147	+	128621914	128637147	5pMXE	ENSMUST00000134421.2	known	0.90	9	1	9	1	n	1.00	9	0	9	0	n	1.00	26	0	26	0	n	0.92	11	1	11	1	n	1.00	23	0	23	0	n	1.00	20	0	20	0	n	0.81	13	3	13	3	y	0.94	15	1	15	1	n	1.00	14	0	14	0	n	1.00	17	0	17	0	n	1.00	21	0	21	0	n	1.00	10	0	10	0	n	ENSMUSG00000028796.18	Phc2	chr4	protein_coding	polyhomeotic 2
known_NIR_12970	chr4	128621663	128637147	+	128621992	128637147	5pMXE	ENSMUST00000147572.8	known	0.69	9	4	9	4	y	0.75	9	3	9	3	y	0.70	26	11	26	11	y	0.79	11	3	11	3	y	0.85	23	4	23	4	y	1.00	20	0	20	0	n	0.65	13	7	13	7	y	1.00	15	0	15	0	n	0.93	14	1	14	1	n	0.81	17	4	17	4	y	1.00	21	0	21	0	n	0.67	10	5	10	5	y	ENSMUSG00000028796.18	Phc2	chr4	protein_coding	polyhomeotic 2
known_NIR_12971	chr4	128621914	128637147	+	128621992	128637147	A5SS	ENSMUST00000133439.8	known	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.25	1	3	1	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.30	3	7	3	7	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000028796.18	Phc2	chr4	protein_coding	polyhomeotic 2
known_NIR_12972	chr4	128621992	128637147	+	128617506	128637147	A5SS	ENSMUST00000030588.13	known	0.80	4	1	4	1	n	1.00	3	0	3	0	n	0.92	11	1	11	1	n	0.75	3	1	3	1	n	0.67	4	2	4	2	n	-	-	-	-	-	-	0.70	7	3	7	3	y	0.00	0	3	0	3	n	0.50	1	1	1	1	n	1.00	4	0	4	0	n	-	-	-	-	-	-	0.71	5	2	5	2	n	ENSMUSG00000028796.18	Phc2	chr4	protein_coding	polyhomeotic 2
known_NIR_12973	chr4	128635877	128637147	+	128621663	128637147	A5SS	ENSMUST00000106079.10	known	0.18	2	9	2	9	y	0.36	5	9	5	9	y	0.21	7	26	7	26	y	0.08	1	11	1	11	n	0.15	4	23	4	23	y	0.05	1	20	1	20	n	0.00	0	13	0	13	n	0.17	3	15	3	15	y	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.00	0	21	0	21	n	0.09	1	10	1	10	n	ENSMUSG00000028796.18	Phc2	chr4	protein_coding	polyhomeotic 2
known_NIR_12974	chr4	128635877	128637147	+	128621992	128637147	A5SS	ENSMUST00000133439.8	known	0.33	2	4	2	4	n	0.62	5	3	5	3	n	0.39	7	11	7	11	y	0.25	1	3	1	3	n	0.50	4	4	4	4	n	1.00	1	0	1	0	n	0.00	0	7	0	7	n	1.00	3	0	3	0	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.17	1	5	1	5	n	ENSMUSG00000028796.18	Phc2	chr4	protein_coding	polyhomeotic 2
known_NIR_12975	chr4	128637254	128638795	+	128637349	128638795	A5SS	ENSMUST00000030588.13	known	0.24	10	32	10	32	y	0.54	15	13	15	13	y	0.33	15	31	15	31	y	0.32	12	25	12	25	y	0.44	35	44	35	44	y	0.43	16	21	16	21	y	0.31	18	40	18	40	y	0.45	18	22	18	22	y	0.43	6	8	6	8	y	0.37	19	32	19	32	y	0.34	13	25	13	25	y	0.39	19	30	19	30	y	ENSMUSG00000028796.18	Phc2	chr4	protein_coding	polyhomeotic 2
known_NIR_12976	chr4	128641035	128641826	+	128641035	128641801	A3SS	ENSMUST00000030588.13	known	0.03	2	72	2	72	y	0.00	0	68	0	68	n	0.02	2	109	2	109	y	0.00	0	98	0	98	n	0.02	2	96	2	96	y	0.00	0	69	0	69	n	0.05	5	96	5	96	y	0.07	4	53	4	53	y	0.00	0	58	0	58	n	0.02	2	104	2	104	y	0.07	5	64	5	64	y	0.00	0	84	0	84	n	ENSMUSG00000028796.18	Phc2	chr4	protein_coding	polyhomeotic 2
known_NIR_12977	chr4	128684106	128699805	-	128684106	128688644	5pMXE	ENSMUST00000071108.14	known	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.07	1	14	1	14	n	0.25	2	6	2	6	n	0.17	1	5	1	5	n	0.29	2	5	2	5	n	0.17	2	10	2	10	y	0.10	1	9	1	9	n	0.25	1	3	1	3	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	ENSMUSG00000028799.16	Zfp362	chr4	protein_coding	zinc finger protein 362
known_NIR_12978	chr4	128684106	128699805	-	128684106;128688769	128688644;128699805	ES	ENSMUST00000106072.9	known	0.00	0	3.5	0	3;4	n	0.00	0	6.0	0	10;2	n	0.09	1	10.0	1	14;6	n	0.31	2	4.5	2	6;3	y	0.18	1	4.5	1	5;4	n	0.33	2	4.0	2	5;3	y	0.25	2	6.0	2	10;2	y	0.14	1	6.0	1	9;3	n	0.18	1	4.5	1	3;6	n	0.00	0	5.5	0	9;2	n	0.00	0	4.5	0	7;2	n	0.00	0	2.5	0	5;0	n	ENSMUSG00000028799.16	Zfp362	chr4	protein_coding	zinc finger protein 362
known_NIR_12979	chr4	128965735	128967292	+	128965735	128967295	A3SS	ENSMUST00000168461.8	known	0.12	6	45	6	45	y	0.16	7	36	7	36	y	0.23	14	48	14	48	y	0.10	12	105	12	105	y	0.18	23	104	23	104	y	0.08	4	45	4	45	y	0.17	16	79	16	79	y	0.05	2	38	2	38	y	0.09	7	71	7	71	y	0.11	12	100	12	100	y	0.09	9	91	9	91	y	0.13	14	95	14	95	y	ENSMUSG00000028793.16	Rnf19b	chr4	protein_coding	ring finger protein 19B
known_NIR_12980	chr4	128977581	128979343	+	128978012	128979343	A5SS	ENSMUST00000030584.11	known	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.17	1	5	1	5	n	0.40	2	3	2	3	n	0.00	0	1	0	1	n	0.25	3	9	3	9	y	0.50	1	1	1	1	n	0.00	0	5	0	5	n	0.20	2	8	2	8	y	0.25	1	3	1	3	n	0.00	0	7	0	7	n	ENSMUSG00000028793.16	Rnf19b	chr4	protein_coding	ring finger protein 19B
known_NIR_12981	chr4	129075893	129076125	-	129075893	129076002	A5SS	ENSMUST00000072431.13	known	0.75	3	1	3	1	n	0.00	0	2	0	2	n	0.30	3	7	3	7	y	0.50	1	1	1	1	n	0.25	1	3	1	3	n	0.62	5	3	5	3	n	0.00	0	1	0	1	n	0.83	5	1	5	1	n	0.88	7	1	7	1	n	1.00	4	0	4	0	n	0.83	5	1	5	1	n	0.75	6	2	6	2	n	ENSMUSG00000040928.16	S100pbp	chr4	protein_coding	S100P binding protein
known_NIR_12982	chr4	129076325	129083335	-	129076325;129077510	129077394;129083335	ES	ENSMUST00000072431.13	known	0.09	1	10.5	1	17;4	n	0.33	1	2.0	1	3;1	n	0.19	4	17.0	4	29;5	y	0.40	6	9.0	6	13;5	y	0.06	1	15.5	1	25;6	n	0.19	3	12.5	3	19;6	y	0.34	6	11.5	6	17;6	y	0.00	0	19.5	0	28;11	n	0.20	2	8.0	2	13;3	y	0.13	2	13.5	2	23;4	y	0.00	0	9.0	0	13;5	n	0.18	4	18.0	4	27;9	y	ENSMUSG00000040928.16	S100pbp	chr4	protein_coding	S100P binding protein
known_NIR_12983	chr4	129106606	129107742	+	129104371	129107742	A5SS	ENSMUST00000106054.4	known	0.00	0	83	0	83	n	0.03	2	72	2	72	y	0.01	2	183	2	183	y	0.03	2	74	2	74	y	0.03	3	113	3	113	y	0.00	0	66	0	66	n	0.01	1	111	1	111	n	0.00	0	61	0	61	n	0.00	0	70	0	70	n	0.00	0	83	0	83	n	0.00	0	82	0	82	n	0.00	0	77	0	77	n	ENSMUSG00000028811.13	Yars	chr4	protein_coding	tyrosyl-tRNA synthetase
known_NIR_12984	chr4	129228437	129228718	-	129228437	129229011	A5SS	ENSMUST00000102598.4	known	0.01	2	195	2	195	y	0.00	0	148	0	148	n	0.00	0	178	0	178	n	0.01	3	238	3	238	y	0.00	1	240	1	240	n	0.00	0	87	0	87	n	0.00	0	207	0	207	n	0.00	0	127	0	127	n	0.02	3	169	3	169	y	0.00	0	270	0	270	n	0.00	0	245	0	245	n	0.00	0	274	0	274	n	ENSMUSG00000057236.11	Rbbp4	chr4	protein_coding	retinoblastoma binding protein 4, chromatin remodeling factor
known_NIR_12985	chr4	129229932	129235270	+	129229932;129234545	129234521;129235270	ES	ENSMUST00000141235.8	known	0.01	2	195.5	2	199;192	y	0.00	0	177.0	0	179;175	n	0.01	2	247.0	2	249;245	y	0.02	4	203.0	4	211;195	y	0.01	4	268.5	4	273;264	y	0.00	0	142.0	0	153;131	n	0.01	3	269.0	3	280;258	y	0.00	0	165.0	0	175;155	n	0.00	0	176.0	0	182;170	n	0.01	2	255.5	2	274;237	y	0.02	4	224.0	4	231;217	y	0.00	0	248.0	0	264;232	n	ENSMUSG00000057572.16	Zbtb8os	chr4	protein_coding	zinc finger and BTB domain containing 8 opposite strand
known_NIR_12986	chr4	129235616	129238005	+	129235616;129236966	129236914;129238005	ES	ENSMUST00000141235.8	known	0.00	0	188.5	0	174;203	n	0.00	0	196.0	0	174;218	n	0.00	1	223.5	1	215;232	n	0.00	0	183.0	0	178;188	n	0.00	0	286.5	0	263;310	n	0.00	0	119.5	0	97;142	n	0.01	3	246.0	3	223;269	y	0.01	1	131.5	1	117;146	n	0.00	0	159.0	0	160;158	n	0.00	1	234.5	1	228;241	n	0.00	1	236.5	1	211;262	n	0.01	1	188.5	1	174;203	n	ENSMUSG00000057572.16	Zbtb8os	chr4	protein_coding	zinc finger and BTB domain containing 8 opposite strand
known_NIR_12987	chr4	129359139	129360707	+	129359139	129360616	A3SS	ENSMUST00000048162.10	known	0.02	1	59	1	59	n	0.01	1	67	1	67	n	0.01	1	129	1	129	n	0.01	1	85	1	85	n	0.01	1	104	1	104	n	0.00	0	82	0	82	n	0.02	2	114	2	114	y	0.00	0	81	0	81	n	0.00	0	61	0	61	n	0.01	1	102	1	102	n	0.03	2	70	2	70	y	0.00	0	91	0	91	n	ENSMUSG00000040859.15	Bsdc1	chr4	protein_coding	BSD domain containing 1
known_NIR_12988	chr4	129471088	129471911	-	129471088	129471205	5pMXE	ENSMUST00000142699.2	known	1.00	23	0	23	0	n	1.00	27	0	27	0	n	0.96	23	1	23	1	n	0.95	19	1	19	1	n	0.87	27	4	27	4	y	1.00	11	0	11	0	n	1.00	35	0	35	0	n	1.00	7	0	7	0	n	0.93	13	1	13	1	n	1.00	10	0	10	0	n	1.00	32	0	32	0	n	0.95	21	1	21	1	n	ENSMUSG00000050493.9	Fam167b	chr4	protein_coding	family with sequence similarity 167, member B
known_NIR_12989	chr4	129494927	129495200	+	129494927	129496015	A3SS	ENSMUST00000173758.8	known	1.00	4	0	4	0	n	1.00	7	0	7	0	n	0.92	12	1	12	1	n	1.00	12	0	12	0	n	1.00	17	0	17	0	n	1.00	4	0	4	0	n	1.00	17	0	17	0	n	1.00	5	0	5	0	n	1.00	3	0	3	0	n	0.80	12	3	12	3	y	0.83	10	2	10	2	y	0.88	7	1	7	1	n	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_12990	chr4	129494927	129495200	+	129494927	129500880	A3SS	ENSMUST00000174819.8	known	0.19	4	17	4	17	y	0.39	7	11	7	11	y	0.50	12	12	12	12	y	0.43	12	16	12	16	y	0.55	17	14	17	14	y	0.31	4	9	4	9	y	0.53	17	15	17	15	y	0.29	5	12	5	12	y	0.43	3	4	3	4	n	0.34	12	23	12	23	y	0.37	10	17	10	17	y	0.27	7	19	7	19	y	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_12991	chr4	129494927	129495200	+	129495036	129495200	A5SS	ENSMUST00000129515.8	known	0.19	4	17	4	17	y	0.28	7	18	7	18	y	0.26	12	34	12	34	y	0.30	12	28	12	28	y	0.30	17	40	17	40	y	0.18	4	18	4	18	y	0.36	17	30	17	30	y	0.24	5	16	5	16	y	0.10	3	26	3	26	y	0.27	12	33	12	33	y	0.31	10	22	10	22	y	0.24	7	22	7	22	y	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_12992	chr4	129494927	129495200	+	129495107	129495200	A5SS	ENSMUST00000127919.2	known	1.00	4	0	4	0	n	1.00	7	0	7	0	n	1.00	12	0	12	0	n	0.86	12	2	12	2	y	1.00	17	0	17	0	n	1.00	4	0	4	0	n	1.00	17	0	17	0	n	0.83	5	1	5	1	n	1.00	3	0	3	0	n	1.00	12	0	12	0	n	1.00	10	0	10	0	n	1.00	7	0	7	0	n	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_12993	chr4	129494927	129495663	+	129494927	129495200	3pMXE	ENSMUST00000173728.2	known	0.87	26	4	26	4	y	0.77	23	7	23	7	y	0.56	15	12	15	12	y	0.66	23	12	23	12	y	0.47	15	17	15	17	y	0.60	6	4	6	4	y	0.53	19	17	19	17	y	0.67	10	5	10	5	y	0.88	23	3	23	3	y	0.65	22	12	22	12	y	0.66	19	10	19	10	y	0.76	22	7	22	7	y	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_12994	chr4	129494927	129495663	+	129494927	129496015	A3SS	ENSMUST00000173758.8	known	1.00	26	0	26	0	n	1.00	23	0	23	0	n	0.94	15	1	15	1	n	1.00	23	0	23	0	n	1.00	15	0	15	0	n	1.00	6	0	6	0	n	1.00	19	0	19	0	n	1.00	10	0	10	0	n	1.00	23	0	23	0	n	0.88	22	3	22	3	y	0.90	19	2	19	2	y	0.96	22	1	22	1	n	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_12995	chr4	129494927	129495663	+	129495036	129495663	A5SS	ENSMUST00000172774.8	known	0.62	26	16	26	16	y	0.56	23	18	23	18	y	0.32	15	32	15	32	y	0.48	23	25	23	25	y	0.35	15	28	15	28	y	0.23	6	20	6	20	y	0.40	19	29	19	29	y	0.42	10	14	10	14	y	0.62	23	14	23	14	y	0.36	22	39	22	39	y	0.41	19	27	19	27	y	0.42	22	30	22	30	y	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_12996	chr4	129494927	129495663	+	129495326	129495663	A5SS&ES	ENSMUST00000129515.8	known	0.72	26	10	26	10	y	0.72	23	9	23	9	y	0.47	15	17	15	17	y	0.66	23	12	23	12	y	0.43	15	20	15	20	y	0.40	6	9	6	9	y	0.46	19	22	19	22	y	0.48	10	11	10	11	y	0.64	23	13	23	13	y	0.54	22	19	22	19	y	0.70	19	8	19	8	y	0.52	22	20	22	20	y	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_12997	chr4	129494927	129495663	+	129495418	129495663	A5SS&ES	ENSMUST00000174610.2	known	0.74	26	9	26	9	y	0.96	23	1	23	1	n	0.83	15	3	15	3	y	0.96	23	1	23	1	n	0.88	15	2	15	2	y	0.67	6	3	6	3	n	0.79	19	5	19	5	y	0.62	10	6	10	6	y	0.79	23	6	23	6	y	0.88	22	3	22	3	y	0.90	19	2	19	2	y	0.96	22	1	22	1	n	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_12998	chr4	129494927	129495988	+	129494927	129495200	3pMXE	ENSMUST00000173728.2	known	0.95	72	4	72	4	y	0.91	71	7	71	7	y	0.85	69	12	69	12	y	0.86	73	12	73	12	y	0.79	65	17	65	17	y	0.93	52	4	52	4	y	0.84	87	17	87	17	y	0.91	49	5	49	5	y	0.95	63	3	63	3	y	0.90	105	12	105	12	y	0.89	85	10	85	10	y	0.91	68	7	68	7	y	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_12999	chr4	129494927	129495988	+	129495036	129495988	A5SS	ENSMUST00000137090.8	known	0.73	72	26	72	26	y	0.63	71	41	71	41	y	0.59	69	47	69	47	y	0.65	73	40	73	40	y	0.50	65	65	65	65	y	0.64	52	29	52	29	y	0.65	87	46	87	46	y	0.64	49	28	49	28	y	0.62	63	38	63	38	y	0.65	105	57	105	57	y	0.64	85	48	85	48	y	0.53	68	60	68	60	y	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_13000	chr4	129494927	129495988	+	129495326	129495988	A5SS&ES	ENSMUST00000151969.8	known	0.84	72	14	72	14	y	0.88	71	10	71	10	y	0.78	69	19	69	19	y	0.90	73	8	73	8	y	0.75	65	22	65	22	y	0.85	52	9	52	9	y	0.86	87	14	87	14	y	0.80	49	12	49	12	y	0.89	63	8	63	8	y	0.91	105	10	105	10	y	0.80	85	21	85	21	y	0.73	68	25	68	25	y	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_13001	chr4	129494927	129495988	+	129495418	129495988	A5SS&ES	ENSMUST00000135628.8	known	0.97	72	2	72	2	y	0.97	71	2	71	2	y	0.99	69	1	69	1	n	1.00	73	0	73	0	n	0.92	65	6	65	6	y	1.00	52	0	52	0	n	0.96	87	4	87	4	y	0.98	49	1	49	1	n	1.00	63	0	63	0	n	0.98	105	2	105	2	y	0.99	85	1	85	1	n	1.00	68	0	68	0	n	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_13002	chr4	129494927	129495988	+	129495754	129495988	A5SS&ES	ENSMUST00000172774.8	known	0.58	72	53	72	53	y	0.47	71	79	71	79	y	0.52	69	64	69	64	y	0.55	73	60	73	60	y	0.41	65	92	65	92	y	0.50	52	51	52	51	y	0.43	87	116	87	116	y	0.54	49	42	49	42	y	0.53	63	55	63	55	y	0.52	105	97	105	97	y	0.47	85	97	85	97	y	0.44	68	85	68	85	y	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_13003	chr4	129494927	129496015	+	129494927	129495988	A3SS	ENSMUST00000102591.10	known	0.00	0	72	0	72	n	0.00	0	71	0	71	n	0.01	1	69	1	69	n	0.00	0	73	0	73	n	0.00	0	65	0	65	n	0.00	0	52	0	52	n	0.00	0	87	0	87	n	0.00	0	49	0	49	n	0.00	0	63	0	63	n	0.03	3	105	3	105	y	0.02	2	85	2	85	y	0.01	1	68	1	68	n	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_13004	chr4	129494927	129500880	+	129494927;129496054	129495988;129500880	ES	ENSMUST00000102591.10	known	0.11	17	139.5	17	72;207	y	0.07	11	149.0	11	71;227	y	0.07	12	151.0	12	69;233	y	0.10	16	140.5	16	73;208	y	0.08	14	160.5	14	65;256	y	0.08	9	101.0	9	52;150	y	0.07	15	205.0	15	87;323	y	0.11	12	101.0	12	49;153	y	0.03	4	140.5	4	63;218	y	0.11	23	195.0	23	105;285	y	0.09	17	165.5	17	85;246	y	0.10	19	163.5	19	68;259	y	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_13005	chr4	129494927	129500880	+	129494927;129496054	129496015;129500880	ES	ENSMUST00000173758.8	known	0.14	17	103.5	17	0;207	n	0.09	11	113.5	11	0;227	n	0.09	12	117.0	12	1;233	n	0.13	16	104.0	16	0;208	n	0.10	14	128.0	14	0;256	n	0.11	9	75.0	9	0;150	n	0.08	15	161.5	15	0;323	n	0.14	12	76.5	12	0;153	n	0.04	4	109.0	4	0;218	n	0.14	23	144.0	23	3;285	y	0.12	17	124.0	17	2;246	y	0.13	19	130.0	19	1;259	n	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_13006	chr4	129494927	129500880	+	129495036	129500880	A5SS	ENSMUST00000173937.8	known	0.85	17	3	17	3	y	0.73	11	4	11	4	y	0.86	12	2	12	2	y	0.80	16	4	16	4	y	0.61	14	9	14	9	y	0.69	9	4	9	4	y	1.00	15	0	15	0	n	0.92	12	1	12	1	n	0.40	4	6	4	6	y	0.82	23	5	23	5	y	0.85	17	3	17	3	y	0.86	19	3	19	3	y	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_13007	chr4	129494927	129500880	+	129496054	129500880	A5SS&ES	ENSMUST00000172774.8	known	0.08	17	207	17	207	y	0.05	11	227	11	227	y	0.05	12	233	12	233	y	0.07	16	208	16	208	y	0.05	14	256	14	256	y	0.06	9	150	9	150	y	0.04	15	323	15	323	y	0.07	12	153	12	153	y	0.02	4	218	4	218	y	0.07	23	285	23	285	y	0.06	17	246	17	246	y	0.07	19	259	19	259	y	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_13008	chr4	129494927;129495326	129495200;129495663	+	129494927	129495663	cassetteExon	ENSMUST00000150110.8	known	0.21	7.0	26	4;10	26	y	0.26	8.0	23	7;9	23	y	0.49	14.5	15	12;17	15	y	0.34	12.0	23	12;12	23	y	0.55	18.5	15	17;20	15	y	0.52	6.5	6	4;9	6	y	0.51	19.5	19	17;22	19	y	0.44	8.0	10	5;11	10	y	0.26	8.0	23	3;13	23	y	0.41	15.5	22	12;19	22	y	0.32	9.0	19	10;8	19	y	0.38	13.5	22	7;20	22	y	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_13009	chr4	129494927;129495326	129495200;129495988	+	129494927	129495988	cassetteExon	ENSMUST00000102591.10	known	0.11	9.0	72	4;14	72	y	0.11	8.5	71	7;10	71	y	0.18	15.5	69	12;19	69	y	0.12	10.0	73	12;8	73	y	0.23	19.5	65	17;22	65	y	0.11	6.5	52	4;9	52	y	0.15	15.5	87	17;14	87	y	0.15	8.5	49	5;12	49	y	0.08	5.5	63	3;8	63	y	0.09	11.0	105	12;10	105	y	0.15	15.5	85	10;21	85	y	0.19	16.0	68	7;25	68	y	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_13010	chr4	129494927;129495326	129495200;129495988	+	129494927;129495754	129495663;129495988	MXE	ENSMUST00000150110.8	known	0.19	9.0	39.5	4;14	26;53	y	0.14	8.5	51.0	7;10	23;79	y	0.28	15.5	39.5	12;19	15;64	y	0.19	10.0	41.5	12;8	23;60	y	0.27	19.5	53.5	17;22	15;92	y	0.19	6.5	28.5	4;9	6;51	y	0.19	15.5	67.5	17;14	19;116	y	0.25	8.5	26.0	5;12	10;42	y	0.12	5.5	39.0	3;8	23;55	y	0.16	11.0	59.5	12;10	22;97	y	0.21	15.5	58.0	10;21	19;97	y	0.23	16.0	53.5	7;25	22;85	y	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_13011	chr4	129494927;129495418	129495200;129495663	+	129494927	129495663	cassetteExon	ENSMUST00000150110.8	known	0.20	6.5	26	4;9	26	y	0.15	4.0	23	7;1	23	n	0.33	7.5	15	12;3	15	y	0.22	6.5	23	12;1	23	n	0.39	9.5	15	17;2	15	y	0.37	3.5	6	4;3	6	y	0.37	11.0	19	17;5	19	y	0.35	5.5	10	5;6	10	y	0.16	4.5	23	3;6	23	y	0.25	7.5	22	12;3	22	y	0.24	6.0	19	10;2	19	y	0.15	4.0	22	7;1	22	n	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_13012	chr4	129494927;129495418	129495200;129495988	+	129494927	129495988	cassetteExon	ENSMUST00000102591.10	known	0.04	3.0	72	4;2	72	y	0.06	4.5	71	7;2	71	y	0.09	6.5	69	12;1	69	n	0.08	6.0	73	12;0	73	n	0.15	11.5	65	17;6	65	y	0.04	2.0	52	4;0	52	n	0.11	10.5	87	17;4	87	y	0.06	3.0	49	5;1	49	n	0.02	1.5	63	3;0	63	n	0.06	7.0	105	12;2	105	y	0.06	5.5	85	10;1	85	n	0.05	3.5	68	7;0	68	n	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_13013	chr4	129494927;129495418	129495200;129495988	+	129494927;129495754	129495663;129495988	MXE	ENSMUST00000150110.8	known	0.07	3.0	39.5	4;2	26;53	y	0.08	4.5	51.0	7;2	23;79	y	0.14	6.5	39.5	12;1	15;64	n	0.13	6.0	41.5	12;0	23;60	n	0.18	11.5	53.5	17;6	15;92	y	0.07	2.0	28.5	4;0	6;51	n	0.13	10.5	67.5	17;4	19;116	y	0.10	3.0	26.0	5;1	10;42	n	0.04	1.5	39.0	3;0	23;55	n	0.11	7.0	59.5	12;2	22;97	y	0.09	5.5	58.0	10;1	19;97	n	0.06	3.5	53.5	7;0	22;85	n	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_13014	chr4	129494927;129495754	129495663;129495988	+	129494927	129495988	cassetteExon	ENSMUST00000102591.10	known	0.35	39.5	72	26;53	72	y	0.42	51.0	71	23;79	71	y	0.36	39.5	69	15;64	69	y	0.36	41.5	73	23;60	73	y	0.45	53.5	65	15;92	65	y	0.35	28.5	52	6;51	52	y	0.44	67.5	87	19;116	87	y	0.35	26.0	49	10;42	49	y	0.38	39.0	63	23;55	63	y	0.36	59.5	105	22;97	105	y	0.41	58.0	85	19;97	85	y	0.44	53.5	68	22;85	68	y	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_13015	chr4	129494927;129496054	129495663;129500880	+	129494927	129500880	cassetteExon	ENSMUST00000174819.8	known	0.87	116.5	17	26;207	17	y	0.92	125.0	11	23;227	11	y	0.91	124.0	12	15;233	12	y	0.88	115.5	16	23;208	16	y	0.91	135.5	14	15;256	14	y	0.90	78.0	9	6;150	9	y	0.92	171.0	15	19;323	15	y	0.87	81.5	12	10;153	12	y	0.97	120.5	4	23;218	4	y	0.87	153.5	23	22;285	23	y	0.89	132.5	17	19;246	17	y	0.88	140.5	19	22;259	19	y	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_13016	chr4	129495036	129495200	+	129495036	129500880	A3SS	ENSMUST00000173937.8	known	0.85	17	3	17	3	y	0.82	18	4	18	4	y	0.94	34	2	34	2	y	0.88	28	4	28	4	y	0.82	40	9	40	9	y	0.82	18	4	18	4	y	1.00	30	0	30	0	n	0.94	16	1	16	1	n	0.81	26	6	26	6	y	0.87	33	5	33	5	y	0.88	22	3	22	3	y	0.88	22	3	22	3	y	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_13017	chr4	129495036	129495663	+	129495036	129495200	A3SS	ENSMUST00000144304.2	known	0.48	16	17	16	17	y	0.50	18	18	18	18	y	0.48	32	34	32	34	y	0.47	25	28	25	28	y	0.41	28	40	28	40	y	0.53	20	18	20	18	y	0.49	29	30	29	30	y	0.47	14	16	14	16	y	0.35	14	26	14	26	y	0.54	39	33	39	33	y	0.55	27	22	27	22	y	0.58	30	22	30	22	y	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_13018	chr4	129495036	129495988	+	129495036	129495200	A3SS	ENSMUST00000144304.2	known	0.60	26	17	26	17	y	0.69	41	18	41	18	y	0.58	47	34	47	34	y	0.59	40	28	40	28	y	0.62	65	40	65	40	y	0.62	29	18	29	18	y	0.61	46	30	46	30	y	0.64	28	16	28	16	y	0.59	38	26	38	26	y	0.63	57	33	57	33	y	0.69	48	22	48	22	y	0.73	60	22	60	22	y	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_13019	chr4	129495036	129495988	+	129495036;129495754	129495663;129495988	ES	ENSMUST00000172774.8	known	0.43	26	34.5	26	16;53	y	0.46	41	48.5	41	18;79	y	0.49	47	48.0	47	32;64	y	0.48	40	42.5	40	25;60	y	0.52	65	60.0	65	28;92	y	0.45	29	35.5	29	20;51	y	0.39	46	72.5	46	29;116	y	0.50	28	28.0	28	14;42	y	0.52	38	34.5	38	14;55	y	0.46	57	68.0	57	39;97	y	0.44	48	62.0	48	27;97	y	0.51	60	57.5	60	30;85	y	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_13020	chr4	129495036	129495988	+	129495418	129495988	A5SS&ES	ENSMUST00000145345.2	known	0.93	26	2	26	2	y	0.95	41	2	41	2	y	0.98	47	1	47	1	n	1.00	40	0	40	0	n	0.92	65	6	65	6	y	1.00	29	0	29	0	n	0.92	46	4	46	4	y	0.97	28	1	28	1	n	1.00	38	0	38	0	n	0.97	57	2	57	2	y	0.98	48	1	48	1	n	1.00	60	0	60	0	n	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_13021	chr4	129495036	129495988	+	129495754	129495988	A5SS&ES	ENSMUST00000150110.8	known	0.33	26	53	26	53	y	0.34	41	79	41	79	y	0.42	47	64	47	64	y	0.40	40	60	40	60	y	0.41	65	92	65	92	y	0.36	29	51	29	51	y	0.28	46	116	46	116	y	0.40	28	42	28	42	y	0.41	38	55	38	55	y	0.37	57	97	57	97	y	0.33	48	97	48	97	y	0.41	60	85	60	85	y	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_13022	chr4	129495036	129500880	+	129495036;129496054	129495988;129500880	ES	ENSMUST00000137090.8	known	0.03	3	116.5	3	26;207	y	0.03	4	134.0	4	41;227	y	0.01	2	140.0	2	47;233	y	0.03	4	124.0	4	40;208	y	0.05	9	160.5	9	65;256	y	0.04	4	89.5	4	29;150	y	0.00	0	184.5	0	46;323	n	0.01	1	90.5	1	28;153	n	0.04	6	128.0	6	38;218	y	0.03	5	171.0	5	57;285	y	0.02	3	147.0	3	48;246	y	0.02	3	159.5	3	60;259	y	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_13023	chr4	129495036	129500880	+	129496054	129500880	A5SS&ES	ENSMUST00000102591.10	known	0.01	3	207	3	207	y	0.02	4	227	4	227	y	0.01	2	233	2	233	y	0.02	4	208	4	208	y	0.03	9	256	9	256	y	0.03	4	150	4	150	y	0.00	0	323	0	323	n	0.01	1	153	1	153	n	0.03	6	218	6	218	y	0.02	5	285	5	285	y	0.01	3	246	3	246	y	0.01	3	259	3	259	y	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_13024	chr4	129495036;129495326	129495200;129495663	+	129495036	129495663	cassetteExon	ENSMUST00000172774.8	known	0.46	13.5	16	17;10	16	y	0.43	13.5	18	18;9	18	y	0.44	25.5	32	34;17	32	y	0.44	20.0	25	28;12	25	y	0.52	30.0	28	40;20	28	y	0.40	13.5	20	18;9	20	y	0.47	26.0	29	30;22	29	y	0.49	13.5	14	16;11	14	y	0.58	19.5	14	26;13	14	y	0.40	26.0	39	33;19	39	y	0.36	15.0	27	22;8	27	y	0.41	21.0	30	22;20	30	y	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_13025	chr4	129495036;129495326	129495200;129495988	+	129495036	129495988	cassetteExon	ENSMUST00000137090.8	known	0.37	15.5	26	17;14	26	y	0.25	14.0	41	18;10	41	y	0.36	26.5	47	34;19	47	y	0.31	18.0	40	28;8	40	y	0.32	31.0	65	40;22	65	y	0.32	13.5	29	18;9	29	y	0.32	22.0	46	30;14	46	y	0.33	14.0	28	16;12	28	y	0.31	17.0	38	26;8	38	y	0.27	21.5	57	33;10	57	y	0.31	21.5	48	22;21	48	y	0.28	23.5	60	22;25	60	y	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_13026	chr4	129495036;129495326	129495200;129495988	+	129495036;129495754	129495663;129495988	MXE	ENSMUST00000172774.8	known	0.31	15.5	34.5	17;14	16;53	y	0.22	14.0	48.5	18;10	18;79	y	0.36	26.5	48.0	34;19	32;64	y	0.30	18.0	42.5	28;8	25;60	y	0.34	31.0	60.0	40;22	28;92	y	0.28	13.5	35.5	18;9	20;51	y	0.23	22.0	72.5	30;14	29;116	y	0.33	14.0	28.0	16;12	14;42	y	0.33	17.0	34.5	26;8	14;55	y	0.24	21.5	68.0	33;10	39;97	y	0.26	21.5	62.0	22;21	27;97	y	0.29	23.5	57.5	22;25	30;85	y	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_13027	chr4	129495036;129495418	129495200;129495663	+	129495036	129495663	cassetteExon	ENSMUST00000172774.8	known	0.45	13.0	16	17;9	16	y	0.35	9.5	18	18;1	18	n	0.37	18.5	32	34;3	32	y	0.37	14.5	25	28;1	25	n	0.43	21.0	28	40;2	28	y	0.34	10.5	20	18;3	20	y	0.38	17.5	29	30;5	29	y	0.44	11.0	14	16;6	14	y	0.53	16.0	14	26;6	14	y	0.32	18.0	39	33;3	39	y	0.31	12.0	27	22;2	27	y	0.28	11.5	30	22;1	30	n	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_13028	chr4	129495036;129495418	129495200;129495988	+	129495036	129495988	cassetteExon	ENSMUST00000137090.8	known	0.27	9.5	26	17;2	26	y	0.20	10.0	41	18;2	41	y	0.27	17.5	47	34;1	47	n	0.26	14.0	40	28;0	40	n	0.26	23.0	65	40;6	65	y	0.24	9.0	29	18;0	29	n	0.27	17.0	46	30;4	46	y	0.23	8.5	28	16;1	28	n	0.25	13.0	38	26;0	38	n	0.23	17.5	57	33;2	57	y	0.19	11.5	48	22;1	48	n	0.15	11.0	60	22;0	60	n	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_13029	chr4	129495036;129495418	129495200;129495988	+	129495036;129495754	129495663;129495988	MXE	ENSMUST00000172774.8	known	0.22	9.5	34.5	17;2	16;53	y	0.17	10.0	48.5	18;2	18;79	y	0.27	17.5	48.0	34;1	32;64	n	0.25	14.0	42.5	28;0	25;60	n	0.28	23.0	60.0	40;6	28;92	y	0.20	9.0	35.5	18;0	20;51	n	0.19	17.0	72.5	30;4	29;116	y	0.23	8.5	28.0	16;1	14;42	n	0.27	13.0	34.5	26;0	14;55	n	0.20	17.5	68.0	33;2	39;97	y	0.16	11.5	62.0	22;1	27;97	n	0.16	11.0	57.5	22;0	30;85	n	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_13030	chr4	129495036;129496054	129495663;129500880	+	129495036	129500880	cassetteExon	ENSMUST00000173937.8	known	0.97	111.5	3	16;207	3	y	0.97	122.5	4	18;227	4	y	0.99	132.5	2	32;233	2	y	0.97	116.5	4	25;208	4	y	0.94	142.0	9	28;256	9	y	0.96	85.0	4	20;150	4	y	1.00	176.0	0	29;323	0	n	0.99	83.5	1	14;153	1	n	0.95	116.0	6	14;218	6	y	0.97	162.0	5	39;285	5	y	0.98	136.5	3	27;246	3	y	0.98	144.5	3	30;259	3	y	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_13031	chr4	129495107	129495200	+	129495036	129495200	A5SS	ENSMUST00000129515.8	known	0.00	0	17	0	17	n	0.00	0	18	0	18	n	0.00	0	34	0	34	n	0.07	2	28	2	28	y	0.00	0	40	0	40	n	0.00	0	18	0	18	n	0.00	0	30	0	30	n	0.06	1	16	1	16	n	0.00	0	26	0	26	n	0.00	0	33	0	33	n	0.00	0	22	0	22	n	0.00	0	22	0	22	n	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_13032	chr4	129495326	129495988	+	129495326;129495754	129495663;129495988	ES	ENSMUST00000129515.8	known	0.31	14	31.5	14	10;53	y	0.19	10	44.0	10	9;79	y	0.32	19	40.5	19	17;64	y	0.18	8	36.0	8	12;60	y	0.28	22	56.0	22	20;92	y	0.23	9	30.0	9	9;51	y	0.17	14	69.0	14	22;116	y	0.31	12	26.5	12	11;42	y	0.19	8	34.0	8	13;55	y	0.15	10	58.0	10	19;97	y	0.29	21	52.5	21	8;97	y	0.32	25	52.5	25	20;85	y	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_13033	chr4	129495418	129495663	+	129495326	129495663	A5SS	ENSMUST00000129515.8	known	0.47	9	10	9	10	y	0.10	1	9	1	9	n	0.15	3	17	3	17	y	0.08	1	12	1	12	n	0.09	2	20	2	20	y	0.25	3	9	3	9	y	0.19	5	22	5	22	y	0.35	6	11	6	11	y	0.32	6	13	6	13	y	0.14	3	19	3	19	y	0.20	2	8	2	8	y	0.05	1	20	1	20	n	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_13034	chr4	129495418	129495988	+	129495326	129495988	A5SS	ENSMUST00000151969.8	known	0.12	2	14	2	14	y	0.17	2	10	2	10	y	0.05	1	19	1	19	n	0.00	0	8	0	8	n	0.21	6	22	6	22	y	0.00	0	9	0	9	n	0.22	4	14	4	14	y	0.08	1	12	1	12	n	0.00	0	8	0	8	n	0.17	2	10	2	10	y	0.05	1	21	1	21	n	0.00	0	25	0	25	n	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_13035	chr4	129495418	129495988	+	129495418	129495663	3pMXE	ENSMUST00000174610.2	known	0.18	2	9	2	9	y	0.67	2	1	2	1	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.75	6	2	6	2	n	0.00	0	3	0	3	n	0.44	4	5	4	5	n	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.40	2	3	2	3	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_13036	chr4	129495418	129495988	+	129495754	129495988	A5SS&ES	ENSMUST00000129515.8	known	0.04	2	53	2	53	y	0.02	2	79	2	79	y	0.02	1	64	1	64	n	0.00	0	60	0	60	n	0.06	6	92	6	92	y	0.00	0	51	0	51	n	0.03	4	116	4	116	y	0.02	1	42	1	42	n	0.00	0	55	0	55	n	0.02	2	97	2	97	y	0.01	1	97	1	97	n	0.00	0	85	0	85	n	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_13037	chr4	129495418;129495754	129495663;129495988	+	129495418	129495988	cassetteExon	ENSMUST00000135628.8	known	0.94	31.0	2	9;53	2	y	0.95	40.0	2	1;79	2	n	0.97	33.5	1	3;64	1	n	1.00	30.5	0	1;60	0	n	0.89	47.0	6	2;92	6	y	1.00	27.0	0	3;51	0	n	0.94	60.5	4	5;116	4	y	0.96	24.0	1	6;42	1	n	1.00	30.5	0	6;55	0	n	0.96	50.0	2	3;97	2	y	0.98	49.5	1	2;97	1	n	1.00	43.0	0	1;85	0	n	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_13038	chr4	129496054	129496410	+	129496054	129500880	A3SS	ENSMUST00000172774.8	known	0.00	0	207	0	207	n	0.00	0	227	0	227	n	0.00	0	233	0	233	n	0.00	0	208	0	208	n	0.00	0	256	0	256	n	0.00	0	150	0	150	n	0.01	2	323	2	323	y	0.00	0	153	0	153	n	0.01	2	218	2	218	y	0.00	1	285	1	285	n	0.01	2	246	2	246	y	0.00	1	259	1	259	n	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_13039	chr4	129500972	129501255	+	129500972	129501249	A3SS	ENSMUST00000172774.8	known	0.01	2	172	2	172	y	0.03	5	183	5	183	y	0.00	0	233	0	233	n	0.00	0	200	0	200	n	0.05	13	258	13	258	y	0.00	0	115	0	115	n	0.05	13	261	13	261	y	0.00	0	129	0	129	n	0.00	0	163	0	163	n	0.01	3	235	3	235	y	0.00	0	237	0	237	n	0.00	0	224	0	224	n	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_13040	chr4	129512155	129512285	-	129511709	129512285	A3SS	ENSMUST00000046675.12	known	0.53	18	16	18	16	y	0.35	8	15	8	15	y	0.37	7	12	7	12	y	0.35	8	15	8	15	y	0.33	14	29	14	29	y	0.17	2	10	2	10	y	0.36	9	16	9	16	y	0.23	3	10	3	10	y	0.58	11	8	11	8	y	0.49	20	21	20	21	y	0.38	8	13	8	13	y	0.41	12	17	12	17	y	ENSMUSG00000040795.13	Iqcc	chr4	protein_coding	IQ motif containing C
known_NIR_13041	chr4	129512428	129512667	-	129512428	129512807	A5SS	ENSMUST00000046675.12	known	0.06	2	31	2	31	y	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.06	1	15	1	15	n	0.08	2	23	2	23	y	0.00	0	10	0	10	n	0.00	0	41	0	41	n	0.06	1	17	1	17	n	0.11	2	16	2	16	y	0.03	1	32	1	32	n	0.00	0	27	0	27	n	0.04	1	24	1	24	n	ENSMUSG00000040795.13	Iqcc	chr4	protein_coding	IQ motif containing C
known_NIR_13042	chr4	129514646	129514777	-	129514669	129514777	A3SS	ENSMUST00000030586.15	known	0.00	0	29	0	29	n	0.10	3	28	3	28	y	0.10	1	9	1	9	n	0.12	2	14	2	14	y	0.00	0	33	0	33	n	0.00	0	10	0	10	n	0.00	0	23	0	23	n	0.11	2	17	2	17	y	0.05	1	21	1	21	n	0.00	0	24	0	24	n	0.11	3	24	3	24	y	0.00	0	22	0	22	n	ENSMUSG00000028795.16	Ccdc28b	chr4	protein_coding	coiled coil domain containing 28B
known_NIR_13043	chr4	129514943	129515155	-	129514943	129516393	A5SS	ENSMUST00000030586.15	known	0.00	0	13	0	13	n	0.00	0	18	0	18	n	0.06	1	16	1	16	n	0.00	0	5	0	5	n	0.00	0	17	0	17	n	0.00	0	7	0	7	n	0.10	2	18	2	18	y	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.00	0	21	0	21	n	0.05	1	19	1	19	n	0.00	0	22	0	22	n	ENSMUSG00000028795.16	Ccdc28b	chr4	protein_coding	coiled coil domain containing 28B
known_NIR_13044	chr4	129516580	129517607	-	129517497	129517607	3pMXE	ENSMUST00000152290.2	known	0.92	12	1	12	1	n	1.00	9	0	9	0	n	0.91	10	1	10	1	n	1.00	16	0	16	0	n	1.00	17	0	17	0	n	1.00	6	0	6	0	n	0.86	18	3	18	3	y	1.00	5	0	5	0	n	0.92	12	1	12	1	n	0.95	20	1	20	1	n	1.00	21	0	21	0	n	1.00	21	0	21	0	n	ENSMUSG00000028795.16	Ccdc28b	chr4	protein_coding	coiled coil domain containing 28B
known_NIR_13045	chr4	129534220	129534724	-	129534220	129534764	A5SS	ENSMUST00000046425.16	known	0.11	1	8	1	8	n	0.00	0	12	0	12	n	0.00	0	25	0	25	n	0.06	1	17	1	17	n	0.07	2	25	2	25	y	0.09	1	10	1	10	n	0.00	0	20	0	20	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.00	0	13	0	13	n	ENSMUSG00000053841.16	Txlna	chr4	protein_coding	taxilin alpha
known_NIR_13046	chr4	129586309	129586859	-	129586309;129586511	129586429;129586859	ES	ENSMUST00000125445.8	known	0.00	0	1.5	0	2;1	n	1.00	4	0.0	4	0;0	n	0.88	7	1.0	7	1;1	n	0.62	5	3.0	5	4;2	y	0.90	13	1.5	13	2;1	n	1.00	3	0.0	3	0;0	n	0.94	8	0.5	8	0;1	n	0.40	1	1.5	1	1;2	n	0.86	6	1.0	6	0;2	n	0.83	10	2.0	10	0;4	n	0.89	4	0.5	4	0;1	n	0.90	9	1.0	9	1;1	n	ENSMUSG00000053730.16	Tmem39b	chr4	protein_coding	transmembrane protein 39b
known_NIR_13047	chr4	129714592	129732771	+	129714394	129732771	A5SS	ENSMUST00000030578.14	known	0.09	6	64	6	64	y	0.04	2	45	2	45	y	0.02	2	95	2	95	y	0.04	4	85	4	85	y	0.10	12	110	12	110	y	0.06	3	49	3	49	y	0.10	10	86	10	86	y	0.02	1	44	1	44	n	0.13	9	60	9	60	y	0.12	15	113	15	113	y	0.10	9	78	9	78	y	0.03	3	97	3	97	y	ENSMUSG00000028788.15	Ptp4a2	chr4	protein_coding	protein tyrosine phosphatase 4a2
known_NIR_13048	chr4	129736555	129740258	+	129736555;129738985	129738855;129740258	ES	ENSMUST00000030578.14	known	0.05	11	233.0	11	234;232	y	0.02	5	197.5	5	195;200	y	0.02	7	290.0	7	277;303	y	0.03	8	276.0	8	245;307	y	0.02	6	290.0	6	273;307	y	0.02	2	122.5	2	113;132	y	0.03	11	312.0	11	316;308	y	0.03	4	140.5	4	130;151	y	0.03	7	198.0	7	182;214	y	0.02	8	351.0	8	332;370	y	0.03	8	268.0	8	253;283	y	0.03	9	276.0	9	268;284	y	ENSMUSG00000028788.15	Ptp4a2	chr4	protein_coding	protein tyrosine phosphatase 4a2
known_NIR_13049	chr4	130159023	130169251	-	130159023	130168880	5pMXE	ENSMUST00000122374.8	known	1.00	23	0	23	0	n	1.00	22	0	22	0	n	1.00	40	0	40	0	n	1.00	27	0	27	0	n	0.97	65	2	65	2	y	1.00	28	0	28	0	n	1.00	43	0	43	0	n	1.00	38	0	38	0	n	1.00	20	0	20	0	n	0.97	37	1	37	1	n	1.00	21	0	21	0	n	1.00	12	0	12	0	n	ENSMUSG00000023232.18	Serinc2	chr4	protein_coding	serine incorporator 2
known_NIR_13050	chr4	130159023;130168763	130168608;130169251	-	130159023	130169251	cassetteExon	ENSMUST00000105996.8	known	0.00	0.0	23	0;0	23	n	0.02	0.5	22	0;1	22	n	0.07	3.0	40	4;2	40	y	0.08	2.5	27	1;4	27	n	0.03	2.0	65	2;2	65	y	0.02	0.5	28	1;0	28	n	0.08	3.5	43	0;7	43	n	0.10	4.0	38	2;6	38	y	0.02	0.5	20	1;0	20	n	0.09	3.5	37	2;5	37	y	0.05	1.0	21	1;1	21	n	0.08	1.0	12	2;0	12	n	ENSMUSG00000023232.18	Serinc2	chr4	protein_coding	serine incorporator 2
known_NIR_13051	chr4	130232377	130238499	-	130232377	130243058	A5SS	ENSMUST00000134159.3	known	0.07	6	81	6	81	y	0.11	7	59	7	59	y	0.01	1	82	1	82	n	0.11	8	64	8	64	y	0.04	3	82	3	82	y	0.00	0	52	0	52	n	0.02	2	93	2	93	y	0.00	0	39	0	39	n	0.04	2	51	2	51	y	0.00	0	72	0	72	n	0.03	2	65	2	65	y	0.06	5	73	5	73	y	ENSMUSG00000028772.20	Zcchc17	chr4	protein_coding	zinc finger, CCHC domain containing 17
known_NIR_13052	chr4	130390705	130396236	+	130390778	130396236	A5SS	ENSMUST00000030315.13	known	0.03	1	33	1	33	n	0.08	1	12	1	12	n	0.00	0	49	0	49	n	0.13	4	27	4	27	y	0.00	0	31	0	31	n	0.00	0	15	0	15	n	0.00	0	22	0	22	n	0.00	0	21	0	21	n	0.00	0	20	0	20	n	0.00	0	28	0	28	n	0.03	1	30	1	30	n	0.00	0	27	0	27	n	ENSMUSG00000028580.16	Pum1	chr4	protein_coding	pumilio RNA-binding family member 1
known_NIR_13053	chr4	130428421	130445465	+	130428421	130455309	A3SS	ENSMUST00000105992.9	known	0.91	10	1	10	1	n	0.62	5	3	5	3	n	0.85	23	4	23	4	y	0.91	21	2	21	2	y	0.79	19	5	19	5	y	0.88	15	2	15	2	y	0.79	15	4	15	4	y	0.71	15	6	15	6	y	0.92	11	1	11	1	n	0.79	31	8	31	8	y	1.00	9	0	9	0	n	0.84	31	6	31	6	y	ENSMUSG00000028580.16	Pum1	chr4	protein_coding	pumilio RNA-binding family member 1
known_NIR_13054	chr4	130428421	130445465	+	130428421	130468774	A3SS	ENSMUST00000105991.9	known	1.00	10	0	10	0	n	1.00	5	0	5	0	n	1.00	23	0	23	0	n	0.91	21	2	21	2	y	0.90	19	2	19	2	y	0.83	15	3	15	3	y	0.88	15	2	15	2	y	0.94	15	1	15	1	n	0.92	11	1	11	1	n	0.91	31	3	31	3	y	0.90	9	1	9	1	n	1.00	31	0	31	0	n	ENSMUSG00000028580.16	Pum1	chr4	protein_coding	pumilio RNA-binding family member 1
known_NIR_13055	chr4	130428421	130455309	+	130428421	130468774	A3SS	ENSMUST00000105991.9	known	1.00	1	0	1	0	n	1.00	3	0	3	0	n	1.00	4	0	4	0	n	0.50	2	2	2	2	n	0.71	5	2	5	2	n	0.40	2	3	2	3	n	0.67	4	2	4	2	n	0.86	6	1	6	1	n	0.50	1	1	1	1	n	0.73	8	3	8	3	y	0.00	0	1	0	1	n	1.00	6	0	6	0	n	ENSMUSG00000028580.16	Pum1	chr4	protein_coding	pumilio RNA-binding family member 1
known_NIR_13056	chr4	130446662	130455309	+	130428421	130455309	A5SS	ENSMUST00000105992.9	known	0.95	20	1	20	1	n	0.70	7	3	7	3	y	0.86	24	4	24	4	y	0.92	24	2	24	2	y	0.85	28	5	28	5	y	0.83	10	2	10	2	y	0.89	33	4	33	4	y	0.74	17	6	17	6	y	0.92	11	1	11	1	n	0.76	26	8	26	8	y	1.00	21	0	21	0	n	0.84	32	6	32	6	y	ENSMUSG00000028580.16	Pum1	chr4	protein_coding	pumilio RNA-binding family member 1
known_NIR_13057	chr4	130457859	130468774	+	130428421	130468774	A5SS	ENSMUST00000105991.9	known	1.00	13	0	13	0	n	1.00	7	0	7	0	n	1.00	19	0	19	0	n	0.94	34	2	34	2	y	0.95	42	2	42	2	y	0.81	13	3	13	3	y	0.90	18	2	18	2	y	0.93	13	1	13	1	n	0.95	20	1	20	1	n	0.86	19	3	19	3	y	0.89	8	1	8	1	n	1.00	39	0	39	0	n	ENSMUSG00000028580.16	Pum1	chr4	protein_coding	pumilio RNA-binding family member 1
known_NIR_13058	chr4	130468867	130471004	+	130468867	130471001	A3SS	ENSMUST00000030315.13	known	0.48	11	12	11	12	y	0.50	5	5	5	5	y	0.83	19	4	19	4	y	0.46	13	15	13	15	y	0.50	19	19	19	19	y	0.54	7	6	7	6	y	0.63	17	10	17	10	y	0.41	7	10	7	10	y	0.57	8	6	8	6	y	0.54	21	18	21	18	y	0.73	11	4	11	4	y	0.44	12	15	12	15	y	ENSMUSG00000028580.16	Pum1	chr4	protein_coding	pumilio RNA-binding family member 1
known_NIR_13059	chr4	130493360	130496127	+	130493366	130496127	A5SS	ENSMUST00000030315.13	known	0.47	18	20	18	20	y	0.61	19	12	19	12	y	0.48	32	34	32	34	y	0.46	22	26	22	26	y	0.43	27	36	27	36	y	0.59	16	11	16	11	y	0.52	26	24	26	24	y	0.43	13	17	13	17	y	0.52	22	20	22	20	y	0.60	37	25	37	25	y	0.49	18	19	18	19	y	0.63	36	21	36	21	y	ENSMUSG00000028580.16	Pum1	chr4	protein_coding	pumilio RNA-binding family member 1
known_NIR_13060	chr4	131570989	131571106	+	131570989	131579635	A3SS	ENSMUST00000137321.3	known	0.50	2	2	2	2	n	0.67	2	1	2	1	n	0.70	7	3	7	3	y	1.00	2	0	2	0	n	0.75	3	1	3	1	n	0.50	2	2	2	2	n	1.00	1	0	1	0	n	0.67	4	2	4	2	n	0.60	3	2	3	2	n	1.00	4	0	4	0	n	0.75	3	1	3	1	n	0.60	3	2	3	2	n	ENSMUSG00000028910.13	Mecr	chr4	protein_coding	mitochondrial trans-2-enoyl-CoA reductase
known_NIR_13061	chr4	131570989	131571106	+	131570989	131581027	A3SS	ENSMUST00000030742.11	known	0.03	2	65	2	65	y	0.04	2	45	2	45	y	0.10	7	61	7	61	y	0.03	2	70	2	70	y	0.04	3	77	3	77	y	0.06	2	32	2	32	y	0.01	1	73	1	73	n	0.11	4	33	4	33	y	0.05	3	62	3	62	y	0.04	4	89	4	89	y	0.05	3	63	3	63	y	0.03	3	86	3	86	y	ENSMUSG00000028910.13	Mecr	chr4	protein_coding	mitochondrial trans-2-enoyl-CoA reductase
known_NIR_13062	chr4	131570989;131579736	131579635;131581027	+	131570989	131581027	cassetteExon	ENSMUST00000030742.11	known	0.05	3.5	65	2;5	65	y	0.03	1.5	45	1;2	45	n	0.08	5.5	61	3;8	61	y	0.03	2.0	70	0;4	70	n	0.03	2.5	77	1;4	77	n	0.03	1.0	32	2;0	32	n	0.05	3.5	73	0;7	73	n	0.06	2.0	33	2;2	33	y	0.08	5.5	62	2;9	62	y	0.03	2.5	89	0;5	89	n	0.02	1.5	63	1;2	63	n	0.02	1.5	86	2;1	86	n	ENSMUSG00000028910.13	Mecr	chr4	protein_coding	mitochondrial trans-2-enoyl-CoA reductase
known_NIR_13063	chr4	131588174;131588543	131588488;131589087	+	131588174	131589087	cassetteExon	ENSMUST00000030742.11	known	0.09	7.0	71	6;8	71	y	0.06	7.0	105	8;6	105	y	0.03	3.0	110	1;5	110	n	0.04	4.5	96	3;6	96	y	0.08	9.0	99	5;13	99	y	0.04	3.0	69	0;6	69	n	0.07	9.5	136	9;10	136	y	0.05	3.5	64	4;3	64	y	0.06	9.5	138	10;9	138	y	0.04	8.0	174	8;8	174	y	0.06	7.5	121	9;6	121	y	0.04	6.0	139	6;6	139	y	ENSMUSG00000028910.13	Mecr	chr4	protein_coding	mitochondrial trans-2-enoyl-CoA reductase
known_NIR_13064	chr4	131601181	131611587	+	131601181	131618518	A3SS	ENSMUST00000053819.6	known	0.33	13	27	13	27	y	0.31	13	29	13	29	y	0.49	19	20	19	20	y	0.23	12	40	12	40	y	0.30	16	37	16	37	y	0.44	8	10	8	10	y	0.21	9	34	9	34	y	0.28	5	13	5	13	y	0.30	6	14	6	14	y	0.36	16	28	16	28	y	0.22	6	21	6	21	y	0.09	3	30	3	30	y	ENSMUSG00000028911.17	Srsf4	chr4	protein_coding	serine and arginine-rich splicing factor 4
known_NIR_13065	chr4	131612803	131613442	+	131612803	131613418	A3SS	ENSMUST00000129966.8	known	1.00	14	0	14	0	n	1.00	20	0	20	0	n	1.00	25	0	25	0	n	1.00	16	0	16	0	n	0.93	28	2	28	2	y	1.00	17	0	17	0	n	0.91	21	2	21	2	y	1.00	19	0	19	0	n	0.86	18	3	18	3	y	1.00	49	0	49	0	n	1.00	15	0	15	0	n	1.00	17	0	17	0	n	ENSMUSG00000028911.17	Srsf4	chr4	protein_coding	serine and arginine-rich splicing factor 4
known_NIR_13066	chr4	131613615	131618518	+	131601181	131618518	A5SS	ENSMUST00000053819.6	known	0.56	34	27	34	27	y	0.42	21	29	21	29	y	0.43	15	20	15	20	y	0.31	18	40	18	40	y	0.37	22	37	22	37	y	0.55	12	10	12	10	y	0.46	29	34	29	34	y	0.41	9	13	9	13	y	0.60	21	14	21	14	y	0.53	32	28	32	28	y	0.46	18	21	18	21	y	0.35	16	30	16	30	y	ENSMUSG00000028911.17	Srsf4	chr4	protein_coding	serine and arginine-rich splicing factor 4
known_NIR_13067	chr4	131655883	131663050	-	131655883;131657106	131657005;131663050	ES	ENSMUST00000155990.8	known	0.01	1	158.0	1	175;141	n	0.00	0	161.0	0	162;160	n	0.00	1	337.5	1	366;309	n	0.00	1	240.5	1	271;210	n	0.00	0	249.0	0	265;233	n	0.00	0	191.0	0	195;187	n	0.01	2	238.5	2	257;220	y	0.00	0	169.5	0	179;160	n	0.01	1	151.0	1	162;140	n	0.01	2	199.0	2	226;172	y	0.00	0	151.0	0	147;155	n	0.00	1	216.0	1	222;210	n	ENSMUSG00000028906.18	Epb41	chr4	protein_coding	erythrocyte membrane protein band 4.1
known_NIR_13068	chr4	131663178	131664326	-	131663163	131664326	A3SS	ENSMUST00000155990.8	known	0.95	123	6	123	6	y	0.97	98	3	98	3	y	0.99	232	2	232	2	y	0.97	149	5	149	5	y	0.98	166	4	166	4	y	0.98	152	3	152	3	y	0.96	153	6	153	6	y	1.00	118	0	118	0	n	0.95	90	5	90	5	y	0.94	131	8	131	8	y	1.00	100	0	100	0	n	0.98	180	3	180	3	y	ENSMUSG00000028906.18	Epb41	chr4	protein_coding	erythrocyte membrane protein band 4.1
known_NIR_13069	chr4	131663178;131664775	131664326;131684954	-	131663178	131684954	cassetteExon	ENSMUST00000146443.8	known	0.94	94.5	6	123;66	6	y	0.89	74.0	9	98;50	9	y	0.78	200.5	56	232;169	56	y	0.96	136.5	6	149;124	6	y	0.85	149.0	26	166;132	26	y	0.86	121.5	20	152;91	20	y	0.86	134.5	22	153;116	22	y	0.85	100.5	18	118;83	18	y	0.90	77.5	9	90;65	9	y	0.94	131.0	8	131;131	8	y	0.90	91.5	10	100;83	10	y	0.91	139.0	14	180;98	14	y	ENSMUSG00000028906.18	Epb41	chr4	protein_coding	erythrocyte membrane protein band 4.1
known_NIR_13070	chr4	131682889	131684954	-	131663178	131684954	A3SS	ENSMUST00000146443.8	known	0.33	3	6	3	6	n	0.44	7	9	7	9	y	0.14	9	56	9	56	y	0.57	8	6	8	6	y	0.21	7	26	7	26	y	0.33	10	20	10	20	y	0.21	6	22	6	22	y	0.42	13	18	13	18	y	0.00	0	9	0	9	n	0.56	10	8	10	8	y	0.38	6	10	6	10	y	0.07	1	14	1	14	n	ENSMUSG00000028906.18	Epb41	chr4	protein_coding	erythrocyte membrane protein band 4.1
known_NIR_13071	chr4	131682889	131684954	-	131664775	131684954	A3SS	ENSMUST00000135579.8	known	0.04	3	66	3	66	y	0.12	7	50	7	50	y	0.05	9	169	9	169	y	0.06	8	124	8	124	y	0.05	7	132	7	132	y	0.10	10	91	10	91	y	0.05	6	116	6	116	y	0.14	13	83	13	83	y	0.00	0	65	0	65	n	0.07	10	131	10	131	y	0.07	6	83	6	83	y	0.01	1	98	1	98	n	ENSMUSG00000028906.18	Epb41	chr4	protein_coding	erythrocyte membrane protein band 4.1
known_NIR_13072	chr4	131685130;131690297	131690235;131695099	-	131685130	131695099	cassetteExon	ENSMUST00000135579.8	known	0.55	43.0	35	49;37	35	y	0.68	39.5	19	36;43	19	y	0.57	113.5	84	113;114	84	y	0.51	76.0	73	73;79	73	y	0.51	78.5	74	75;82	74	y	0.40	53.0	80	63;43	80	y	0.66	85.5	45	85;86	45	y	0.50	56.5	56	49;64	56	y	0.58	38.0	28	38;38	28	y	0.55	77.0	63	73;81	63	y	0.41	32.0	47	32;32	47	y	0.49	52.0	54	49;55	54	y	ENSMUSG00000028906.18	Epb41	chr4	protein_coding	erythrocyte membrane protein band 4.1
known_NIR_13073	chr4	131690297;131691498	131691442;131695099	-	131690297	131695099	cassetteExon	ENSMUST00000137846.8	known	0.03	1.0	37	0;2	37	n	0.09	4.5	43	4;5	43	y	0.03	4.0	114	7;1	114	n	0.02	1.5	79	1;2	79	n	0.07	6.5	82	6;7	82	y	0.11	5.5	43	3;8	43	y	0.03	3.0	86	3;3	86	y	0.10	7.0	64	8;6	64	y	0.03	1.0	38	0;2	38	n	0.02	2.0	81	1;3	81	n	0.06	2.0	32	1;3	32	n	0.06	3.5	55	4;3	55	y	ENSMUSG00000028906.18	Epb41	chr4	protein_coding	erythrocyte membrane protein band 4.1
known_NIR_13074	chr4	131691498	131695099	-	131685130	131695099	A3SS	ENSMUST00000135579.8	known	0.05	2	35	2	35	y	0.21	5	19	5	19	y	0.01	1	84	1	84	n	0.03	2	73	2	73	y	0.09	7	74	7	74	y	0.09	8	80	8	80	y	0.06	3	45	3	45	y	0.10	6	56	6	56	y	0.07	2	28	2	28	y	0.05	3	63	3	63	y	0.06	3	47	3	47	y	0.05	3	54	3	54	y	ENSMUSG00000028906.18	Epb41	chr4	protein_coding	erythrocyte membrane protein band 4.1
known_NIR_13075	chr4	131695283	131701995	-	131695286	131701995	A3SS	ENSMUST00000137846.8	known	0.14	13	80	13	80	y	0.08	5	60	5	60	y	0.13	28	195	28	195	y	0.15	26	143	26	143	y	0.12	23	173	23	173	y	0.14	19	121	19	121	y	0.08	11	131	11	131	y	0.18	20	94	20	94	y	0.18	15	69	15	69	y	0.14	16	95	16	95	y	0.16	13	69	13	69	y	0.09	12	122	12	122	y	ENSMUSG00000028906.18	Epb41	chr4	protein_coding	erythrocyte membrane protein band 4.1
known_NIR_13076	chr4	131914258	131931443	-	131914258	131938063	A5SS	ENSMUST00000085181.5	known	0.99	68	1	68	1	n	0.87	80	12	80	12	y	0.95	83	4	83	4	y	0.85	74	13	74	13	y	0.96	107	4	107	4	y	0.95	55	3	55	3	y	0.96	95	4	95	4	y	0.95	42	2	42	2	y	0.88	50	7	50	7	y	0.92	76	7	76	7	y	0.97	64	2	64	2	y	0.97	60	2	60	2	y	ENSMUSG00000040025.18	Ythdf2	chr4	protein_coding	YTH N6-methyladenosine RNA binding protein 2
known_NIR_13077	chr4	131914258	131932825	-	131914258	131931443	A5SS	ENSMUST00000152796.8	known	0.00	0	68	0	68	n	0.02	2	80	2	80	y	0.00	0	83	0	83	n	0.00	0	74	0	74	n	0.02	2	107	2	107	y	0.00	0	55	0	55	n	0.04	4	95	4	95	y	0.02	1	42	1	42	n	0.00	0	50	0	50	n	0.00	0	76	0	76	n	0.00	0	64	0	64	n	0.00	0	60	0	60	n	ENSMUSG00000040025.18	Ythdf2	chr4	protein_coding	YTH N6-methyladenosine RNA binding protein 2
known_NIR_13078	chr4	131914258	131938063	-	131914258;131933026	131931443;131938063	ES	ENSMUST00000152796.8	known	0.02	1	47.5	1	68;27	n	0.18	12	53.5	12	80;27	y	0.06	4	65.5	4	83;48	y	0.20	13	51.5	13	74;29	y	0.05	4	79.0	4	107;51	y	0.07	3	39.5	3	55;24	y	0.06	4	66.5	4	95;38	y	0.05	2	36.0	2	42;30	y	0.16	7	37.0	7	50;24	y	0.12	7	51.5	7	76;27	y	0.05	2	41.5	2	64;19	y	0.04	2	44.0	2	60;28	y	ENSMUSG00000040025.18	Ythdf2	chr4	protein_coding	YTH N6-methyladenosine RNA binding protein 2
known_NIR_13079	chr4	131914258;131933026	131932825;131938063	-	131914258	131938063	cassetteExon	ENSMUST00000085181.5	known	0.93	13.5	1	0;27	1	n	0.55	14.5	12	2;27	12	y	0.86	24.0	4	0;48	4	n	0.53	14.5	13	0;29	13	n	0.87	26.5	4	2;51	4	y	0.80	12.0	3	0;24	3	n	0.84	21.0	4	4;38	4	y	0.89	15.5	2	1;30	2	n	0.63	12.0	7	0;24	7	n	0.66	13.5	7	0;27	7	n	0.83	9.5	2	0;19	2	n	0.88	14.0	2	0;28	2	n	ENSMUSG00000040025.18	Ythdf2	chr4	protein_coding	YTH N6-methyladenosine RNA binding protein 2
known_NIR_13080	chr4	132001798	132003934	+	132001798	132010105	A3SS	ENSMUST00000030731.11	known	0.00	0	47	0	47	n	0.00	0	56	0	56	n	0.00	0	52	0	52	n	0.07	5	64	5	64	y	0.00	0	58	0	58	n	0.00	0	26	0	26	n	0.07	4	53	4	53	y	0.03	1	30	1	30	n	0.04	1	25	1	25	n	0.00	0	50	0	50	n	0.06	3	44	3	44	y	0.03	2	56	2	56	y	ENSMUSG00000028899.12	Taf12	chr4	protein_coding	TATA-box binding protein associated factor 12
known_NIR_13081	chr4	132001798;132009389	132009305;132010105	+	132001798	132010105	cassetteExon	ENSMUST00000030731.11	known	0.00	0.0	47	0;0	47	n	0.00	0.0	56	0;0	56	n	0.00	0.0	52	0;0	52	n	0.00	0.0	64	0;0	64	n	0.00	0.0	58	0;0	58	n	0.00	0.0	26	0;0	26	n	0.05	3.0	53	2;4	53	y	0.00	0.0	30	0;0	30	n	0.00	0.0	25	0;0	25	n	0.00	0.0	50	0;0	50	n	0.00	0.0	44	0;0	44	n	0.00	0.0	56	0;0	56	n	ENSMUSG00000028899.12	Taf12	chr4	protein_coding	TATA-box binding protein associated factor 12
known_NIR_13082	chr4	132041678	132046766	-	132041678	132052519	A5SS	ENSMUST00000150959.8	known	1.00	84	0	84	0	n	0.99	103	1	103	1	n	0.98	98	2	98	2	y	1.00	70	0	70	0	n	1.00	93	0	93	0	n	1.00	84	0	84	0	n	1.00	123	0	123	0	n	1.00	71	0	71	0	n	1.00	74	0	74	0	n	1.00	145	0	145	0	n	1.00	108	0	108	0	n	1.00	107	0	107	0	n	ENSMUSG00000028898.16	Trnau1ap	chr4	protein_coding	tRNA selenocysteine 1 associated protein 1
known_NIR_13083	chr4	132041678	132048990	-	132041678	132046766	A5SS&ES	ENSMUST00000137520.8	known	0.00	0	84	0	84	n	0.02	2	103	2	103	y	0.00	0	98	0	98	n	0.00	0	70	0	70	n	0.00	0	93	0	93	n	0.00	0	84	0	84	n	0.02	2	123	2	123	y	0.00	0	71	0	71	n	0.00	0	74	0	74	n	0.00	0	145	0	145	n	0.00	0	108	0	108	n	0.00	0	107	0	107	n	ENSMUSG00000028898.16	Trnau1ap	chr4	protein_coding	tRNA selenocysteine 1 associated protein 1
known_NIR_13084	chr4	132041678	132052519	-	132049121	132052519	3pMXE	ENSMUST00000144387.2	known	0.00	0	60	0	60	n	0.02	1	54	1	54	n	0.03	2	71	2	71	y	0.00	0	57	0	57	n	0.00	0	72	0	72	n	0.00	0	42	0	42	n	0.00	0	85	0	85	n	0.00	0	50	0	50	n	0.00	0	38	0	38	n	0.00	0	87	0	87	n	0.00	0	67	0	67	n	0.00	0	72	0	72	n	ENSMUSG00000028898.16	Trnau1ap	chr4	protein_coding	tRNA selenocysteine 1 associated protein 1
known_NIR_13085	chr4	132041678;132046885	132046766;132048990	-	132041678	132048990	cassetteExon	ENSMUST00000105962.10	known	1.00	69.5	0	84;55	0	n	0.98	83.5	2	103;64	2	y	1.00	82.5	0	98;67	0	n	1.00	64.0	0	70;58	0	n	1.00	80.5	0	93;68	0	n	1.00	67.5	0	84;51	0	n	0.98	90.5	2	123;58	2	y	1.00	58.5	0	71;46	0	n	1.00	58.5	0	74;43	0	n	1.00	124.5	0	145;104	0	n	1.00	86.5	0	108;65	0	n	1.00	86.0	0	107;65	0	n	ENSMUSG00000028898.16	Trnau1ap	chr4	protein_coding	tRNA selenocysteine 1 associated protein 1
known_NIR_13086	chr4	132052571	132055780	-	132052571;132053356	132053257;132055780	ES	ENSMUST00000105962.10	known	0.03	2	55.5	2	48;63	y	0.00	0	37.5	0	43;32	n	0.00	0	52.0	0	46;58	n	0.00	0	45.0	0	52;38	n	0.02	1	50.5	1	58;43	n	0.00	0	36.5	0	42;31	n	0.02	1	63.5	1	73;54	n	0.00	0	34.0	0	37;31	n	0.03	1	33.5	1	38;29	n	0.02	1	56.5	1	59;54	n	0.00	0	40.5	0	48;33	n	0.03	2	56.0	2	64;48	y	ENSMUSG00000028898.16	Trnau1ap	chr4	protein_coding	tRNA selenocysteine 1 associated protein 1
known_NIR_13087	chr4	132052571	132055780	-	132053356	132055780	A3SS	ENSMUST00000146166.8	known	0.03	2	63	2	63	y	0.00	0	32	0	32	n	0.00	0	58	0	58	n	0.00	0	38	0	38	n	0.02	1	43	1	43	n	0.00	0	31	0	31	n	0.02	1	54	1	54	n	0.00	0	31	0	31	n	0.03	1	29	1	29	n	0.02	1	54	1	54	n	0.00	0	33	0	33	n	0.04	2	48	2	48	y	ENSMUSG00000028898.16	Trnau1ap	chr4	protein_coding	tRNA selenocysteine 1 associated protein 1
known_NIR_13088	chr4	132052571	132056664	-	132052571;132053356	132053257;132056664	ES	ENSMUST00000150959.8	known	0.00	0	26.5	0	48;5	n	0.00	0	27.0	0	43;11	n	0.15	5	28.0	5	46;10	y	0.00	0	29.5	0	52;7	n	0.00	0	34.0	0	58;10	n	0.15	4	23.5	4	42;5	y	0.06	3	46.0	3	73;19	y	0.00	0	21.0	0	37;5	n	0.12	3	22.5	3	38;7	y	0.03	1	34.0	1	59;9	n	0.07	2	25.5	2	48;3	y	0.00	0	38.0	0	64;12	n	ENSMUSG00000028898.16	Trnau1ap	chr4	protein_coding	tRNA selenocysteine 1 associated protein 1
known_NIR_13089	chr4	132052571	132056664	-	132055877	132056664	A3SS&ES	ENSMUST00000146166.8	known	0.00	0	37	0	37	n	0.00	0	29	0	29	n	0.12	5	36	5	36	y	0.00	0	18	0	18	n	0.00	0	47	0	47	n	0.17	4	19	4	19	y	0.07	3	40	3	40	y	0.00	0	16	0	16	n	0.13	3	20	3	20	y	0.02	1	42	1	42	n	0.07	2	27	2	27	y	0.00	0	29	0	29	n	ENSMUSG00000028898.16	Trnau1ap	chr4	protein_coding	tRNA selenocysteine 1 associated protein 1
known_NIR_13090	chr4	132052571;132052800	132052663;132053257	-	132052571	132053257	cassetteExon	ENSMUST00000105962.10	known	0.04	2.0	48	2;2	48	y	0.02	1.0	43	2;0	43	n	0.04	2.0	46	4;0	46	n	0.01	0.5	52	0;1	52	n	0.08	5.0	58	6;4	58	y	0.03	1.5	42	3;0	42	n	0.06	5.0	73	6;4	73	y	0.04	1.5	37	3;0	37	n	0.03	1.0	38	0;2	38	n	0.03	2.0	59	3;1	59	n	0.02	1.0	48	2;0	48	n	0.04	2.5	64	1;4	64	n	ENSMUSG00000028898.16	Trnau1ap	chr4	protein_coding	tRNA selenocysteine 1 associated protein 1
known_NIR_13091	chr4	132052571;132055877	132055780;132056664	-	132052571;132053356	132053257;132056664	MXE	ENSMUST00000150959.8	known	0.42	19.5	26.5	2;37	48;5	y	0.35	14.5	27.0	0;29	43;11	n	0.39	18.0	28.0	0;36	46;10	n	0.23	9.0	29.5	0;18	52;7	n	0.41	24.0	34.0	1;47	58;10	n	0.29	9.5	23.5	0;19	42;5	n	0.31	20.5	46.0	1;40	73;19	n	0.28	8.0	21.0	0;16	37;5	n	0.32	10.5	22.5	1;20	38;7	n	0.39	21.5	34.0	1;42	59;9	n	0.35	13.5	25.5	0;27	48;3	n	0.29	15.5	38.0	2;29	64;12	y	ENSMUSG00000028898.16	Trnau1ap	chr4	protein_coding	tRNA selenocysteine 1 associated protein 1
known_NIR_13092	chr4	132053356	132056664	-	132053356;132055877	132055780;132056664	ES	ENSMUST00000105962.10	known	0.09	5	50.0	5	63;37	y	0.27	11	30.5	11	32;29	y	0.18	10	47.0	10	58;36	y	0.20	7	28.0	7	38;18	y	0.18	10	45.0	10	43;47	y	0.17	5	25.0	5	31;19	y	0.29	19	47.0	19	54;40	y	0.18	5	23.5	5	31;16	y	0.22	7	24.5	7	29;20	y	0.16	9	48.0	9	54;42	y	0.09	3	30.0	3	33;27	y	0.24	12	38.5	12	48;29	y	ENSMUSG00000028898.16	Trnau1ap	chr4	protein_coding	tRNA selenocysteine 1 associated protein 1
known_NIR_13093	chr4	132053356	132056664	-	132055877	132056664	3pMXE	ENSMUST00000141317.2	known	0.12	5	37	5	37	y	0.28	11	29	11	29	y	0.22	10	36	10	36	y	0.28	7	18	7	18	y	0.18	10	47	10	47	y	0.21	5	19	5	19	y	0.32	19	40	19	40	y	0.24	5	16	5	16	y	0.26	7	20	7	20	y	0.18	9	42	9	42	y	0.10	3	27	3	27	y	0.29	12	29	12	29	y	ENSMUSG00000028898.16	Trnau1ap	chr4	protein_coding	tRNA selenocysteine 1 associated protein 1
known_NIR_13094	chr4	132065549	132067236	-	132066552	132067236	3pMXE	ENSMUST00000131307.8	known	1.00	8	0	8	0	n	0.50	3	3	3	3	n	0.48	10	11	10	11	y	0.89	8	1	8	1	n	0.91	10	1	10	1	n	1.00	8	0	8	0	n	0.93	14	1	14	1	n	0.67	2	1	2	1	n	0.57	8	6	8	6	y	0.67	4	2	4	2	n	0.58	7	5	7	5	y	0.75	3	1	3	1	n	ENSMUSG00000028896.14	Rcc1	chr4	protein_coding	regulator of chromosome condensation 1
known_NIR_13095	chr4	132065549;132066552	132066514;132067236	-	132065549	132067236	cassetteExon	ENSMUST00000084250.11	known	0.11	1.0	8	2;0	8	n	0.40	2.0	3	1;3	3	n	0.47	9.0	10	7;11	10	y	0.06	0.5	8	0;1	8	n	0.13	1.5	10	2;1	10	n	0.06	0.5	8	1;0	8	n	0.03	0.5	14	0;1	14	n	0.33	1.0	2	1;1	2	n	0.33	4.0	8	2;6	8	y	0.27	1.5	4	1;2	4	n	0.30	3.0	7	1;5	7	n	0.33	1.5	3	2;1	3	n	ENSMUSG00000028896.14	Rcc1	chr4	protein_coding	regulator of chromosome condensation 1
known_NIR_13096	chr4	132067317	132075311	-	132067317	132072957	5pMXE	ENSMUST00000084250.11	known	0.25	2	6	2	6	n	0.40	2	3	2	3	n	0.20	2	8	2	8	y	0.00	0	4	0	4	n	0.17	2	10	2	10	y	0.25	1	3	1	3	n	0.36	4	7	4	7	y	0.00	0	3	0	3	n	0.38	3	5	3	5	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.00	0	3	0	3	n	ENSMUSG00000028896.14	Rcc1	chr4	protein_coding	regulator of chromosome condensation 1
known_NIR_13097	chr4	132079554	132079931	-	132079554	132079974	A5SS	ENSMUST00000155816.8	known	0.14	7	44	7	44	y	0.02	2	87	2	87	y	0.10	5	47	5	47	y	0.11	5	40	5	40	y	0.14	7	42	7	42	y	0.09	5	51	5	51	y	0.06	3	48	3	48	y	0.08	3	34	3	34	y	0.16	7	37	7	37	y	0.04	2	55	2	55	y	0.10	5	47	5	47	y	0.02	1	51	1	51	n	ENSMUSG00000085241.8	Snhg3	chr4	lncRNA	small nucleolar RNA host gene 3
known_NIR_13098	chr4	132105874	132114203	-	132105874;132110673	132110593;132114203	ES	ENSMUST00000102568.10	known	0.35	8	15.0	8	20;10	y	0.29	5	12.0	5	15;9	y	0.28	11	28.5	11	32;25	y	0.34	14	27.0	14	26;28	y	0.37	20	33.5	20	29;38	y	0.29	6	15.0	6	12;18	y	0.28	9	23.5	9	26;21	y	0.16	5	26.5	5	22;31	y	0.53	10	9.0	10	12;6	y	0.43	19	25.5	19	28;23	y	0.27	4	11.0	4	9;13	y	0.42	16	22.0	16	18;26	y	ENSMUSG00000066043.14	Phactr4	chr4	protein_coding	phosphatase and actin regulator 4
known_NIR_13099	chr4	132114376	132125263	-	132114376	132140381	A5SS	ENSMUST00000102568.10	known	0.00	0	43	0	43	n	0.00	0	32	0	32	n	0.02	1	62	1	62	n	0.00	0	50	0	50	n	0.06	4	58	4	58	y	0.00	0	43	0	43	n	0.00	0	35	0	35	n	0.00	0	38	0	38	n	0.03	1	29	1	29	n	0.00	0	56	0	56	n	0.00	0	23	0	23	n	0.00	0	45	0	45	n	ENSMUSG00000066043.14	Phactr4	chr4	protein_coding	phosphatase and actin regulator 4
known_NIR_13100	chr4	132262974	132265498	+	132262974;132263457	132263294;132265498	ES	ENSMUST00000139074.8	known	0.92	39	3.5	39	4;3	y	0.96	41	1.5	41	1;2	n	0.96	53	2.0	53	0;4	n	0.98	62	1.0	62	0;2	n	0.98	86	2.0	86	1;3	n	0.87	31	4.5	31	4;5	y	0.97	82	2.5	82	1;4	n	0.91	31	3.0	31	2;4	y	0.93	38	3.0	38	1;5	n	0.99	67	0.5	67	1;0	n	0.99	58	0.5	58	0;1	n	0.98	67	1.5	67	0;3	n	ENSMUSG00000054405.15	Dnajc8	chr4	protein_coding	DnaJ heat shock protein family (Hsp40) member C8
known_NIR_13101	chr4	132262974	132265498	+	132263457	132265498	5pMXE	ENSMUST00000105938.4	known	0.93	39	3	39	3	y	0.95	41	2	41	2	y	0.93	53	4	53	4	y	0.97	62	2	62	2	y	0.97	86	3	86	3	y	0.86	31	5	31	5	y	0.95	82	4	82	4	y	0.89	31	4	31	4	y	0.88	38	5	38	5	y	1.00	67	0	67	0	n	0.98	58	1	58	1	n	0.96	67	3	67	3	y	ENSMUSG00000054405.15	Dnajc8	chr4	protein_coding	DnaJ heat shock protein family (Hsp40) member C8
known_NIR_13102	chr4	132265599	132269032	+	132265599	132269093	A3SS	ENSMUST00000139074.8	known	0.00	0	55	0	55	n	0.00	0	50	0	50	n	0.00	0	64	0	64	n	0.02	1	61	1	61	n	0.01	1	80	1	80	n	0.00	0	47	0	47	n	0.05	3	58	3	58	y	0.00	0	45	0	45	n	0.00	0	38	0	38	n	0.00	0	62	0	62	n	0.02	1	46	1	46	n	0.00	0	70	0	70	n	ENSMUSG00000054405.15	Dnajc8	chr4	protein_coding	DnaJ heat shock protein family (Hsp40) member C8
known_NIR_13103	chr4	132271433	132273948	+	132271433;132272062	132271968;132273948	ES	ENSMUST00000139074.8	known	0.00	0	73.5	0	57;90	n	0.00	0	76.5	0	69;84	n	0.01	1	102.0	1	98;106	n	0.01	1	90.0	1	80;100	n	0.03	3	96.0	3	90;102	y	0.02	1	43.5	1	43;44	n	0.00	0	120.5	0	97;144	n	0.04	2	53.5	2	48;59	y	0.05	4	73.0	4	74;72	y	0.01	1	84.5	1	78;91	n	0.09	6	63.0	6	46;80	y	0.01	1	82.0	1	76;88	n	ENSMUSG00000054405.15	Dnajc8	chr4	protein_coding	DnaJ heat shock protein family (Hsp40) member C8
known_NIR_13104	chr4	132271433	132273948	+	132272062	132273948	A5SS	ENSMUST00000142281.8	known	0.00	0	90	0	90	n	0.00	0	84	0	84	n	0.01	1	106	1	106	n	0.01	1	100	1	100	n	0.03	3	102	3	102	y	0.02	1	44	1	44	n	0.00	0	144	0	144	n	0.03	2	59	2	59	y	0.05	4	72	4	72	y	0.01	1	91	1	91	n	0.07	6	80	6	80	y	0.01	1	88	1	88	n	ENSMUSG00000054405.15	Dnajc8	chr4	protein_coding	DnaJ heat shock protein family (Hsp40) member C8
known_NIR_13105	chr4	132278921;132279460	132279352;132280328	+	132278921	132280328	cassetteExon	ENSMUST00000094657.10	known	0.00	0.0	112	0;0	112	n	0.00	0.0	92	0;0	92	n	0.00	0.5	143	1;0	143	n	0.02	2.0	89	4;0	89	n	0.01	2.5	178	2;3	178	y	0.00	0.0	99	0;0	99	n	0.00	0.5	165	1;0	165	n	0.00	0.0	66	0;0	66	n	0.01	0.5	89	0;1	89	n	0.00	0.0	92	0;0	92	n	0.00	0.0	116	0;0	116	n	0.02	2.5	137	3;2	137	y	ENSMUSG00000054405.15	Dnajc8	chr4	protein_coding	DnaJ heat shock protein family (Hsp40) member C8
known_NIR_13106	chr4	132384099	132394466	+	132384099	132389206	A3SS&ES	ENSMUST00000127682.8	known	0.10	1	9	1	9	n	0.00	0	15	0	15	n	0.04	2	45	2	45	y	0.00	0	21	0	21	n	0.00	0	27	0	27	n	0.00	0	27	0	27	n	0.06	1	17	1	17	n	0.00	0	18	0	18	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.00	0	20	0	20	n	ENSMUSG00000028886.16	Eya3	chr4	protein_coding	EYA transcriptional coactivator and phosphatase 3
known_NIR_13107	chr4	132384099	132394466	+	132384099;132389249	132389206;132394466	ES	ENSMUST00000135299.8	known	0.07	1	12.5	1	9;16	n	0.00	0	9.5	0	15;4	n	0.04	2	48.5	2	45;52	y	0.00	0	22.0	0	21;23	n	0.00	0	26.0	0	27;25	n	0.00	0	29.0	0	27;31	n	0.04	1	24.0	1	17;31	n	0.00	0	22.5	0	18;27	n	0.00	0	15.5	0	9;22	n	0.00	0	20.5	0	14;27	n	0.00	0	13.0	0	11;15	n	0.00	0	20.0	0	20;20	n	ENSMUSG00000028886.16	Eya3	chr4	protein_coding	EYA transcriptional coactivator and phosphatase 3
known_NIR_13108	chr4	132389249	132397500	+	132389249;132394545	132394466;132397500	ES	ENSMUST00000135299.8	known	0.00	0	16.0	0	16;16	n	0.00	0	7.5	0	4;11	n	0.00	0	46.5	0	52;41	n	0.04	1	25.0	1	23;27	n	0.04	1	24.5	1	25;24	n	0.00	0	29.0	0	31;27	n	0.03	1	31.0	1	31;31	n	0.00	0	21.5	0	27;16	n	0.00	0	20.0	0	22;18	n	0.06	2	31.0	2	27;35	y	0.00	0	13.0	0	15;11	n	0.00	0	21.5	0	20;23	n	ENSMUSG00000028886.16	Eya3	chr4	protein_coding	EYA transcriptional coactivator and phosphatase 3
known_NIR_13109	chr4	132400343	132417016	+	132400343;132408204	132408067;132417016	ES	ENSMUST00000135299.8	known	0.98	20	0.5	20	0;1	n	0.98	20	0.5	20	1;0	n	0.97	42	1.5	42	1;2	n	0.94	17	1.0	17	2;0	n	0.94	25	1.5	25	1;2	n	0.91	15	1.5	15	2;1	n	0.91	21	2.0	21	2;2	y	0.91	24	2.5	24	4;1	n	0.94	16	1.0	16	0;2	n	1.00	27	0.0	27	0;0	n	1.00	19	0.0	19	0;0	n	0.94	23	1.5	23	0;3	n	ENSMUSG00000028886.16	Eya3	chr4	protein_coding	EYA transcriptional coactivator and phosphatase 3
known_NIR_13110	chr4	132458383	132459726	-	132458383	132459484	A5SS	ENSMUST00000045550.5	known	0.00	0	7	0	7	n	0.12	1	7	1	7	n	0.00	0	5	0	5	n	0.24	4	13	4	13	y	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.54	7	6	7	6	y	0.00	0	10	0	10	n	-	-	-	-	-	-	0.12	1	7	1	7	n	0.00	0	5	0	5	n	0.20	2	8	2	8	y	ENSMUSG00000037752.5	Xkr8	chr4	protein_coding	X-linked Kx blood group related 8
known_NIR_13111	chr4	132555514	132556684	-	132555517	132556684	A3SS	ENSMUST00000030702.14	known	0.00	0	23	0	23	n	0.19	4	17	4	17	y	0.12	4	29	4	29	y	0.00	0	26	0	26	n	0.00	0	42	0	42	n	0.07	2	26	2	26	y	0.08	2	22	2	22	y	0.00	0	17	0	17	n	0.00	0	31	0	31	n	0.13	4	26	4	26	y	0.09	2	20	2	20	y	0.03	1	29	1	29	n	ENSMUSG00000028882.14	Ppp1r8	chr4	protein_coding	protein phosphatase 1, regulatory subunit 8
known_NIR_13112	chr4	132568015	132570120	-	132568015	132570368	A5SS	ENSMUST00000030702.14	known	0.00	0	24	0	24	n	0.00	0	19	0	19	n	0.00	0	23	0	23	n	0.05	1	20	1	20	n	0.10	3	26	3	26	y	0.05	1	18	1	18	n	0.04	1	25	1	25	n	0.00	0	17	0	17	n	0.00	0	15	0	15	n	0.06	2	33	2	33	y	0.00	0	15	0	15	n	0.00	0	29	0	29	n	ENSMUSG00000028882.14	Ppp1r8	chr4	protein_coding	protein phosphatase 1, regulatory subunit 8
known_NIR_13113	chr4	132631344	132640980	-	132631344;132638089	132638003;132640980	ES	ENSMUST00000030696.11	known	0.27	9	24.5	9	31;18	y	0.27	7	19.0	7	23;15	y	0.21	13	49.5	13	58;41	y	0.31	15	33.0	15	32;34	y	0.25	10	29.5	10	34;25	y	0.10	2	18.0	2	14;22	y	0.29	16	39.0	16	40;38	y	0.14	3	18.5	3	18;19	y	0.20	7	28.0	7	27;29	y	0.35	26	49.0	26	51;47	y	0.27	7	18.5	7	16;21	y	0.14	6	36.0	6	45;27	y	ENSMUSG00000028878.12	Fam76a	chr4	protein_coding	family with sequence similarity 76, member A
known_NIR_13114	chr4	132739269	132739501	+	132739269	132739504	A3SS	ENSMUST00000145682.2	known	0.00	0	3	0	3	n	0.67	2	1	2	1	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.27	3	8	3	8	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.12	1	7	1	7	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	ENSMUSG00000037692.15	Ahdc1	chr4	protein_coding	AT hook, DNA binding motif, containing 1
known_NIR_13115	chr4	132782514	132787973	+	132782514	132787987	A3SS	ENSMUST00000105915.8	known	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.18	2	9	2	9	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.29	2	5	2	5	n	0.00	0	6	0	6	n	0.33	3	6	3	6	n	ENSMUSG00000037692.15	Ahdc1	chr4	protein_coding	AT hook, DNA binding motif, containing 1
known_NIR_13116	chr4	132782514	132787987	+	132782514	132788092	A3SS	ENSMUST00000154646.8	known	0.82	9	2	9	2	y	0.33	2	4	2	4	n	0.38	3	5	3	5	n	0.29	4	10	4	10	y	0.56	10	8	10	8	y	0.38	6	10	6	10	y	0.90	9	1	9	1	n	0.44	4	5	4	5	n	0.20	2	8	2	8	y	0.62	5	3	5	3	n	0.55	6	5	6	5	y	0.50	6	6	6	6	y	ENSMUSG00000037692.15	Ahdc1	chr4	protein_coding	AT hook, DNA binding motif, containing 1
known_NIR_13117	chr4	132793588	132798887	+	132793588	132804298	A3SS	ENSMUST00000105915.8	known	0.00	0	8	0	8	n	0.12	2	15	2	15	y	0.00	0	5	0	5	n	0.07	1	14	1	14	n	0.00	0	21	0	21	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.00	0	21	0	21	n	0.00	0	14	0	14	n	ENSMUSG00000037692.15	Ahdc1	chr4	protein_coding	AT hook, DNA binding motif, containing 1
known_NIR_13118	chr4	132858034	132903752	+	132858039	132903752	A5SS	ENSMUST00000084241.12	known	0.25	4	12	4	12	y	0.00	0	6	0	6	n	0.00	0	37	0	37	n	0.09	3	30	3	30	y	0.06	2	31	2	31	y	0.06	1	15	1	15	n	0.14	5	32	5	32	y	0.00	0	16	0	16	n	0.00	0	26	0	26	n	0.00	0	24	0	24	n	0.14	2	12	2	12	y	0.12	4	28	4	28	y	ENSMUSG00000028868.14	Wasf2	chr4	protein_coding	WASP family, member 2
known_NIR_13119	chr4	132997120	133004842	-	132997120;132998358	132998274;133004842	ES	ENSMUST00000105907.9	known	0.01	1	71.5	1	69;74	n	0.00	0	69.0	0	65;73	n	0.03	2	70.5	2	76;65	y	0.00	0	66.5	0	65;68	n	0.04	3	72.0	3	61;83	y	0.03	1	31.0	1	30;32	n	0.00	0	75.0	0	76;74	n	0.03	1	39.0	1	41;37	n	0.02	1	50.0	1	45;55	n	0.00	0	81.0	0	85;77	n	0.00	0	56.5	0	56;57	n	0.02	2	79.5	2	78;81	y	ENSMUSG00000028857.17	Tmem222	chr4	protein_coding	transmembrane protein 222
known_NIR_13120	chr4	132997120	133004842	-	132998358	133004842	3pMXE	ENSMUST00000153059.2	known	0.01	1	74	1	74	n	0.00	0	73	0	73	n	0.03	2	65	2	65	y	0.00	0	68	0	68	n	0.03	3	83	3	83	y	0.03	1	32	1	32	n	0.00	0	74	0	74	n	0.03	1	37	1	37	n	0.02	1	55	1	55	n	0.00	0	77	0	77	n	0.00	0	57	0	57	n	0.02	2	81	2	81	y	ENSMUSG00000028857.17	Tmem222	chr4	protein_coding	transmembrane protein 222
known_NIR_13121	chr4	132997120;132998125	132997981;132998274	-	132997120	132998274	cassetteExon	ENSMUST00000105907.9	known	0.05	4.0	69	4;4	69	y	0.02	1.5	65	0;3	65	n	0.07	6.0	76	6;6	76	y	0.05	3.5	65	4;3	65	y	0.04	2.5	61	5;0	61	n	0.02	0.5	30	1;0	30	n	0.03	2.0	76	0;4	76	n	0.07	3.0	41	4;2	41	y	0.08	4.0	45	2;6	45	y	0.07	6.5	85	5;8	85	y	0.10	6.0	56	6;6	56	y	0.07	5.5	78	3;8	78	y	ENSMUSG00000028857.17	Tmem222	chr4	protein_coding	transmembrane protein 222
known_NIR_13122	chr4	132997120;132998358	132997981;133004842	-	132997120	133004842	cassetteExon	ENSMUST00000139030.2	known	0.97	39.0	1	4;74	1	n	1.00	36.5	0	0;73	0	n	0.95	35.5	2	6;65	2	y	1.00	36.0	0	4;68	0	n	0.94	44.0	3	5;83	3	y	0.94	16.5	1	1;32	1	n	1.00	37.0	0	0;74	0	n	0.95	20.5	1	4;37	1	n	0.97	28.5	1	2;55	1	n	1.00	41.0	0	5;77	0	n	1.00	31.5	0	6;57	0	n	0.95	42.0	2	3;81	2	y	ENSMUSG00000028857.17	Tmem222	chr4	protein_coding	transmembrane protein 222
known_NIR_13123	chr4	133022643	133023727	-	133022701	133023727	A3SS	ENSMUST00000043305.14	known	0.00	0	180	0	180	n	0.00	0	173	0	173	n	0.00	0	137	0	137	n	0.00	0	207	0	207	n	0.00	0	323	0	323	n	0.00	0	113	0	113	n	0.00	0	294	0	294	n	0.00	0	135	0	135	n	0.00	0	193	0	193	n	0.00	0	331	0	331	n	0.01	2	239	2	239	y	0.00	0	301	0	301	n	ENSMUSG00000037622.15	Wdtc1	chr4	protein_coding	WD and tetratricopeptide repeats 1
known_NIR_13124	chr4	133098218	133138987	+	133098218	133139148	A3SS	ENSMUST00000030669.8	known	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.17	2	10	2	10	y	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	ENSMUSG00000028854.10	Slc9a1	chr4	protein_coding	solute carrier family 9 (sodium/hydrogen exchanger), member 1
known_NIR_13125	chr4	133246363	133255253	+	133246363	133255051	A3SS	ENSMUST00000149807.2	known	0.47	7	8	7	8	y	0.75	6	2	6	2	n	0.19	3	13	3	13	y	0.83	10	2	10	2	y	0.33	3	6	3	6	n	0.33	1	2	1	2	n	0.70	7	3	7	3	y	0.67	6	3	6	3	n	0.70	7	3	7	3	y	0.23	3	10	3	10	y	0.20	2	8	2	8	y	0.67	2	1	2	1	n	ENSMUSG00000037600.17	Kdf1	chr4	protein_coding	keratinocyte differentiation factor 1
known_NIR_13126	chr4	133312111	133313221	+	133312180	133313221	A5SS	ENSMUST00000030661.14	known	0.00	0	40	0	40	n	0.04	2	49	2	49	y	0.03	2	59	2	59	y	0.03	1	36	1	36	n	0.06	4	58	4	58	y	0.07	2	28	2	28	y	0.12	5	36	5	36	y	0.13	4	26	4	26	y	0.14	3	19	3	19	y	0.00	0	44	0	44	n	0.06	2	30	2	30	y	0.09	4	41	4	41	y	ENSMUSG00000028848.14	Gpn2	chr4	protein_coding	GPN-loop GTPase 2
known_NIR_13127	chr4	133390102	133391969	-	133390102	133397049	A5SS	ENSMUST00000067902.13	known	0.83	10	2	10	2	y	0.58	14	10	14	10	y	0.83	5	1	5	1	n	0.83	10	2	10	2	y	0.89	17	2	17	2	y	1.00	7	0	7	0	n	0.68	17	8	17	8	y	0.83	20	4	20	4	y	0.82	9	2	9	2	y	0.58	11	8	11	8	y	0.94	15	1	15	1	n	0.74	17	6	17	6	y	ENSMUSG00000043257.16	Pigv	chr4	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class V
known_NIR_13128	chr4	133390102	133397049	-	133390102;133393090	133391969;133397049	ES	ENSMUST00000062118.11	known	0.17	2	10.0	2	10;10	y	0.53	10	9.0	10	14;4	y	0.18	1	4.5	1	5;4	n	0.21	2	7.5	2	10;5	y	0.11	2	17.0	2	17;17	y	0.00	0	6.5	0	7;6	n	0.38	8	13.0	8	17;9	y	0.23	4	13.5	4	20;7	y	0.24	2	6.5	2	9;4	y	0.43	8	10.5	8	11;10	y	0.09	1	10.5	1	15;6	n	0.34	6	11.5	6	17;6	y	ENSMUSG00000043257.16	Pigv	chr4	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class V
known_NIR_13129	chr4	133393090	133397049	-	133390102	133397049	A3SS	ENSMUST00000067902.13	known	0.83	10	2	10	2	y	0.29	4	10	4	10	y	0.80	4	1	4	1	n	0.71	5	2	5	2	n	0.89	17	2	17	2	y	1.00	6	0	6	0	n	0.53	9	8	9	8	y	0.64	7	4	7	4	y	0.67	4	2	4	2	n	0.56	10	8	10	8	y	0.86	6	1	6	1	n	0.50	6	6	6	6	y	ENSMUSG00000043257.16	Pigv	chr4	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class V
known_NIR_13130	chr4	133396268	133397049	-	133390102	133397049	A3SS	ENSMUST00000067902.13	known	0.00	0	2	0	2	n	0.23	3	10	3	10	y	0.67	2	1	2	1	n	0.33	1	2	1	2	n	0.71	5	2	5	2	n	1.00	4	0	4	0	n	0.11	1	8	1	8	n	0.43	3	4	3	4	n	0.60	3	2	3	2	n	0.27	3	8	3	8	y	0.80	4	1	4	1	n	0.33	3	6	3	6	n	ENSMUSG00000043257.16	Pigv	chr4	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class V
known_NIR_13131	chr4	133396268	133397049	-	133393090	133397049	A3SS	ENSMUST00000062118.11	known	0.00	0	10	0	10	n	0.43	3	4	3	4	n	0.33	2	4	2	4	n	0.17	1	5	1	5	n	0.23	5	17	5	17	y	0.40	4	6	4	6	y	0.10	1	9	1	9	n	0.30	3	7	3	7	y	0.43	3	4	3	4	n	0.23	3	10	3	10	y	0.40	4	6	4	6	y	0.33	3	6	3	6	n	ENSMUSG00000043257.16	Pigv	chr4	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class V
known_NIR_13132	chr4	133414690	133414849	-	133414687	133414849	A3SS	ENSMUST00000145664.9	known	0.00	0	14	0	14	n	0.00	0	14	0	14	n	0.03	1	28	1	28	n	0.19	5	22	5	22	y	0.09	4	42	4	42	y	0.00	0	12	0	12	n	0.03	1	30	1	30	n	0.00	0	35	0	35	n	0.09	2	21	2	21	y	0.00	0	36	0	36	n	0.10	1	9	1	9	n	0.00	0	31	0	31	n	ENSMUSG00000007880.17	Arid1a	chr4	protein_coding	AT rich interactive domain 1A (SWI-like)
known_NIR_13133	chr4	133599314	133600155	-	133599314	133608228	A5SS	ENSMUST00000105894.11	known	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.12	2	15	2	15	y	0.11	1	8	1	8	n	0.06	1	17	1	17	n	0.00	0	12	0	12	n	0.07	1	14	1	14	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.00	0	13	0	13	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	ENSMUSG00000003644.18	Rps6ka1	chr4	protein_coding	ribosomal protein S6 kinase polypeptide 1
known_NIR_13134	chr4	133599314	133601919	-	133599314	133608228	A5SS	ENSMUST00000105894.11	known	0.33	3	6	3	6	n	0.18	2	9	2	9	y	0.00	0	15	0	15	n	0.11	1	8	1	8	n	0.06	1	17	1	17	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.07	1	13	1	13	n	0.00	0	13	0	13	n	0.18	2	9	2	9	y	ENSMUSG00000003644.18	Rps6ka1	chr4	protein_coding	ribosomal protein S6 kinase polypeptide 1
known_NIR_13135	chr4	133693790	133694071	-	133693790	133694077	A5SS	ENSMUST00000102553.11	known	0.01	1	160	1	160	n	0.00	0	199	0	199	n	0.01	1	183	1	183	n	0.02	4	196	4	196	y	0.01	1	188	1	188	n	0.00	0	148	0	148	n	0.00	1	239	1	239	n	0.00	0	126	0	126	n	0.00	0	101	0	101	n	0.02	4	204	4	204	y	0.01	2	139	2	139	y	0.00	0	123	0	123	n	ENSMUSG00000003038.16	Hmgn2	chr4	protein_coding	high mobility group nucleosomal binding domain 2
known_NIR_13136	chr4	133694312	133694586	-	133694312	133695106	A5SS	ENSMUST00000102553.11	known	0.00	0	146	0	146	n	0.00	0	168	0	168	n	0.00	0	171	0	171	n	0.00	0	157	0	157	n	0.00	0	146	0	146	n	0.00	0	122	0	122	n	0.01	2	155	2	155	y	0.00	0	123	0	123	n	0.00	0	88	0	88	n	0.00	0	153	0	153	n	0.00	0	128	0	128	n	0.00	0	127	0	127	n	ENSMUSG00000003038.16	Hmgn2	chr4	protein_coding	high mobility group nucleosomal binding domain 2
known_NIR_13137	chr4	133698564	133710111	-	133698564	133707435	5pMXE	ENSMUST00000134096.2	known	0.00	0	64	0	64	n	0.03	2	62	2	62	y	0.00	0	101	0	101	n	0.00	0	60	0	60	n	0.00	0	83	0	83	n	0.00	0	58	0	58	n	0.00	0	59	0	59	n	0.02	1	49	1	49	n	0.03	1	36	1	36	n	0.00	0	64	0	64	n	0.02	1	65	1	65	n	0.00	0	45	0	45	n	ENSMUSG00000012117.14	Dhdds	chr4	protein_coding	dehydrodolichyl diphosphate synthase
known_NIR_13138	chr4	133698564	133710111	-	133698564;133707542	133707435;133710111	ES	ENSMUST00000144668.8	known	0.00	0	67.0	0	64;70	n	0.03	2	72.5	2	62;83	y	0.00	0	103.0	0	101;105	n	0.00	0	69.5	0	60;79	n	0.00	0	91.5	0	83;100	n	0.00	0	69.5	0	58;81	n	0.00	0	59.0	0	59;59	n	0.02	1	58.5	1	49;68	n	0.02	1	43.5	1	36;51	n	0.00	0	70.5	0	64;77	n	0.01	1	69.0	1	65;73	n	0.00	0	55.0	0	45;65	n	ENSMUSG00000012117.14	Dhdds	chr4	protein_coding	dehydrodolichyl diphosphate synthase
known_NIR_13139	chr4	133698564	133710111	-	133707542	133710111	A3SS&ES	ENSMUST00000105887.8	known	0.00	0	70	0	70	n	0.02	2	83	2	83	y	0.00	0	105	0	105	n	0.00	0	79	0	79	n	0.00	0	100	0	100	n	0.00	0	81	0	81	n	0.00	0	59	0	59	n	0.01	1	68	1	68	n	0.02	1	51	1	51	n	0.00	0	77	0	77	n	0.01	1	73	1	73	n	0.00	0	65	0	65	n	ENSMUSG00000012117.14	Dhdds	chr4	protein_coding	dehydrodolichyl diphosphate synthase
known_NIR_13140	chr4	133698567	133707435	-	133698564	133707435	A3SS	ENSMUST00000144668.8	known	0.10	7	64	7	64	y	0.07	5	62	5	62	y	0.08	9	101	9	101	y	0.09	6	60	6	60	y	0.08	7	83	7	83	y	0.18	13	58	13	58	y	0.08	5	59	5	59	y	0.09	5	49	5	49	y	0.12	5	36	5	36	y	0.11	8	64	8	64	y	0.07	5	65	5	65	y	0.08	4	45	4	45	y	ENSMUSG00000012117.14	Dhdds	chr4	protein_coding	dehydrodolichyl diphosphate synthase
known_NIR_13141	chr4	133710225	133719775	-	133710225;133718691	133718590;133719775	ES	ENSMUST00000144668.8	known	0.04	3	67.0	3	66;68	y	0.00	0	80.0	0	86;74	n	0.00	0	112.0	0	109;115	n	0.00	0	90.0	0	91;89	n	0.00	0	86.5	0	86;87	n	0.00	0	78.0	0	86;70	n	0.00	0	81.5	0	74;89	n	0.00	0	68.5	0	71;66	n	0.00	0	54.0	0	59;49	n	0.00	0	92.5	0	104;81	n	0.00	0	76.5	0	82;71	n	0.00	0	73.5	0	66;81	n	ENSMUSG00000012117.14	Dhdds	chr4	protein_coding	dehydrodolichyl diphosphate synthase
known_NIR_13142	chr4	133721615;133724042	133723917;133724133	-	133721615	133724133	cassetteExon	ENSMUST00000144668.8	known	0.02	1.0	51	2;0	51	n	0.00	0.0	55	0;0	55	n	0.00	0.5	102	1;0	102	n	0.01	1.0	67	2;0	67	n	0.03	2.5	83	3;2	83	y	0.03	2.0	61	3;1	61	n	0.03	2.0	64	3;1	64	n	0.00	0.0	65	0;0	65	n	0.01	0.5	56	1;0	56	n	0.00	0.0	87	0;0	87	n	0.00	0.0	66	0;0	66	n	0.00	0.0	66	0;0	66	n	ENSMUSG00000012117.14	Dhdds	chr4	protein_coding	dehydrodolichyl diphosphate synthase
known_NIR_13143	chr4	133721615;133724046	133723917;133724133	-	133721615	133724133	cassetteExon	ENSMUST00000144668.8	known	0.02	1.0	51	2;0	51	n	0.00	0.0	55	0;0	55	n	0.03	3.5	102	1;6	102	n	0.02	1.5	67	2;1	67	n	0.03	3.0	83	3;3	83	y	0.05	3.5	61	3;4	61	y	0.02	1.5	64	3;0	64	n	0.00	0.0	65	0;0	65	n	0.01	0.5	56	1;0	56	n	0.00	0.0	87	0;0	87	n	0.00	0.0	66	0;0	66	n	0.00	0.0	66	0;0	66	n	ENSMUSG00000012117.14	Dhdds	chr4	protein_coding	dehydrodolichyl diphosphate synthase
known_NIR_13144	chr4	133727650	133728036	-	133727704	133728036	A3SS	ENSMUST00000144668.8	known	0.03	2	58	2	58	y	0.00	0	41	0	41	n	0.03	3	92	3	92	y	0.02	1	63	1	63	n	0.06	4	67	4	67	y	0.00	0	52	0	52	n	0.01	1	71	1	71	n	0.04	3	67	3	67	y	0.03	1	33	1	33	n	0.05	3	60	3	60	y	0.00	0	72	0	72	n	0.05	3	61	3	61	y	ENSMUSG00000012117.14	Dhdds	chr4	protein_coding	dehydrodolichyl diphosphate synthase
known_NIR_13145	chr4	133727704	133728178	-	133727704	133728036	A5SS	ENSMUST00000144668.8	known	0.09	6	58	6	58	y	0.05	2	41	2	41	y	0.14	15	92	15	92	y	0.00	0	63	0	63	n	0.07	5	67	5	67	y	0.10	6	52	6	52	y	0.07	5	71	5	71	y	0.06	4	67	4	67	y	0.20	8	33	8	33	y	0.05	3	60	3	60	y	0.04	3	72	3	72	y	0.08	5	61	5	61	y	ENSMUSG00000012117.14	Dhdds	chr4	protein_coding	dehydrodolichyl diphosphate synthase
known_NIR_13146	chr4	133883682	133884122	-	133883682	133894600	A5SS	ENSMUST00000040271.12	known	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.21	3	11	3	11	y	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	ENSMUSG00000037443.14	Cep85	chr4	protein_coding	centrosomal protein 85
known_NIR_13147	chr4	133883682	133894600	-	133892068	133894600	3pMXE	ENSMUST00000141384.2	known	0.38	3	5	3	5	n	0.33	4	8	4	8	y	0.42	8	11	8	11	y	0.75	9	3	9	3	y	0.43	6	8	6	8	y	0.72	13	5	13	5	y	0.61	11	7	11	7	y	0.63	12	7	12	7	y	0.62	10	6	10	6	y	0.43	10	13	10	13	y	0.80	8	2	8	2	y	0.75	9	3	9	3	y	ENSMUSG00000037443.14	Cep85	chr4	protein_coding	centrosomal protein 85
known_NIR_13148	chr4	134006852	134011557	-	134006427	134011557	A3SS	ENSMUST00000105877.9	known	0.40	2	3	2	3	n	0.11	1	8	1	8	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.06	1	17	1	17	n	0.20	1	4	1	4	n	0.22	4	14	4	14	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.11	1	8	1	8	n	0.33	1	2	1	2	n	0.27	3	8	3	8	y	ENSMUSG00000050890.16	Pdik1l	chr4	protein_coding	PDLIM1 interacting kinase 1 like
known_NIR_13149	chr4	134055084	134056216	+	134055093	134056216	A5SS	ENSMUST00000105875.8	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.02	2	92	2	92	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028834.14	Trim63	chr4	protein_coding	tripartite motif-containing 63
known_NIR_13150	chr4	134124897	134130281	+	134123735	134130281	A5SS	ENSMUST00000105869.9	known	0.30	13	31	13	31	y	0.20	5	20	5	20	y	0.41	14	20	14	20	y	0.25	14	42	14	42	y	0.35	21	39	21	39	y	0.45	19	23	19	23	y	0.25	13	38	13	38	y	0.42	20	28	20	28	y	0.32	12	25	12	25	y	0.38	17	28	17	28	y	0.27	11	30	11	30	y	0.31	15	33	15	33	y	ENSMUSG00000037366.15	Pafah2	chr4	protein_coding	platelet-activating factor acetylhydrolase 2
known_NIR_13151	chr4	134130415	134138215	+	134130415;134131554	134131404;134138215	ES	ENSMUST00000140888.8	known	0.00	0	76.0	0	151;1	n	0.00	0	50.5	0	99;2	n	0.00	0	67.5	0	131;4	n	0.02	2	87.5	2	174;1	n	0.00	0	114.5	0	226;3	n	0.00	0	56.5	0	111;2	n	0.03	3	92.5	3	181;4	y	0.00	0	81.5	0	163;0	n	0.00	0	57.5	0	113;2	n	0.00	0	88.0	0	172;4	n	0.02	1	47.0	1	93;1	n	0.00	0	80.5	0	158;3	n	ENSMUSG00000037366.15	Pafah2	chr4	protein_coding	platelet-activating factor acetylhydrolase 2
known_NIR_13152	chr4	134131554	134138215	+	134131554	134132317	3pMXE	ENSMUST00000132658.2	known	0.01	1	87	1	87	n	0.02	2	93	2	93	y	0.04	4	107	4	107	y	0.01	1	182	1	182	n	0.02	3	183	3	183	y	0.02	2	128	2	128	y	0.03	4	155	4	155	y	0.00	0	129	0	129	n	0.02	2	102	2	102	y	0.02	4	176	4	176	y	0.01	1	109	1	109	n	0.02	3	156	3	156	y	ENSMUSG00000037366.15	Pafah2	chr4	protein_coding	platelet-activating factor acetylhydrolase 2
known_NIR_13153	chr4	134131554	134138215	+	134131554;134132413	134132317;134138215	ES	ENSMUST00000105869.9	known	0.01	1	104.0	1	87;121	n	0.02	2	87.5	2	93;82	y	0.04	4	103.5	4	107;100	y	0.01	1	153.5	1	182;125	n	0.02	3	181.0	3	183;179	y	0.02	2	118.0	2	128;108	y	0.03	4	142.5	4	155;130	y	0.00	0	120.5	0	129;112	n	0.02	2	104.5	2	102;107	y	0.02	4	166.0	4	176;156	y	0.01	1	99.5	1	109;90	n	0.02	3	153.5	3	156;151	y	ENSMUSG00000037366.15	Pafah2	chr4	protein_coding	platelet-activating factor acetylhydrolase 2
known_NIR_13154	chr4	134132413	134138215	+	134130415	134138215	A5SS	ENSMUST00000145626.2	known	1.00	121	0	121	0	n	1.00	82	0	82	0	n	1.00	100	0	100	0	n	0.98	125	2	125	2	y	1.00	179	0	179	0	n	1.00	108	0	108	0	n	0.98	130	3	130	3	y	1.00	112	0	112	0	n	1.00	107	0	107	0	n	1.00	156	0	156	0	n	0.99	90	1	90	1	n	1.00	151	0	151	0	n	ENSMUSG00000037366.15	Pafah2	chr4	protein_coding	platelet-activating factor acetylhydrolase 2
known_NIR_13155	chr4	134224347;134227994	134227911;134234114	+	134224347	134234114	cassetteExon	ENSMUST00000081525.4	known	0.41	5.5	8	3;8	8	y	0.12	2.0	14	0;4	14	n	0.14	0.5	3	0;1	3	n	0.23	9.5	31	8;11	31	y	0.17	5.5	27	5;6	27	y	0.36	5.0	9	4;6	9	y	0.30	9.5	22	3;16	22	y	0.29	4.0	10	1;7	10	n	0.22	5.0	18	4;6	18	y	0.27	12.5	34	6;19	34	y	0.25	7.5	22	4;11	22	y	0.11	2.0	16	2;2	16	y	ENSMUSG00000037348.16	Paqr7	chr4	protein_coding	progestin and adipoQ receptor family member VII
known_NIR_13156	chr4	134227994	134234114	+	134234028	134234114	A5SS&ES	ENSMUST00000155449.2	known	1.00	8	0	8	0	n	1.00	4	0	4	0	n	0.33	1	2	1	2	n	0.61	11	7	11	7	y	0.86	6	1	6	1	n	1.00	6	0	6	0	n	1.00	16	0	16	0	n	1.00	7	0	7	0	n	0.75	6	2	6	2	n	0.90	19	2	19	2	y	0.85	11	2	11	2	y	0.40	2	3	2	3	n	ENSMUSG00000037348.16	Paqr7	chr4	protein_coding	progestin and adipoQ receptor family member VII
known_NIR_13157	chr4	134227994;134234028	134233992;134234114	+	134227994	134234114	cassetteExon	ENSMUST00000136171.8	known	0.00	0.0	8	0;0	8	n	0.00	0.0	4	0;0	4	n	0.50	1.0	1	0;2	1	n	0.24	3.5	11	0;7	11	n	0.14	1.0	6	1;1	6	n	0.00	0.0	6	0;0	6	n	0.00	0.0	16	0;0	16	n	0.00	0.0	7	0;0	7	n	0.14	1.0	6	0;2	6	n	0.05	1.0	19	0;2	19	n	0.15	2.0	11	2;2	11	y	0.43	1.5	2	0;3	2	n	ENSMUSG00000037348.16	Paqr7	chr4	protein_coding	progestin and adipoQ receptor family member VII
known_NIR_13158	chr4	134260063	134262216	-	134260063	134262393	A5SS	ENSMUST00000102550.10	known	0.15	5	29	5	29	y	0.10	4	37	4	37	y	0.23	8	27	8	27	y	0.12	7	50	7	50	y	0.12	8	60	8	60	y	0.15	4	23	4	23	y	0.09	6	61	6	61	y	0.15	4	22	4	22	y	0.15	5	28	5	28	y	0.06	5	76	5	76	y	0.04	2	44	2	44	y	0.10	4	37	4	37	y	ENSMUSG00000046671.19	Mtfr1l	chr4	protein_coding	mitochondrial fission regulator 1-like
known_NIR_13159	chr4	134260063	134262216	-	134260063	134262561	A5SS	ENSMUST00000116279.10	known	0.10	5	44	5	44	y	0.08	4	48	4	48	y	0.12	8	58	8	58	y	0.12	7	53	7	53	y	0.12	8	57	8	57	y	0.09	4	39	4	39	y	0.08	6	67	6	67	y	0.10	4	35	4	35	y	0.09	5	52	5	52	y	0.08	5	57	5	57	y	0.04	2	49	2	49	y	0.06	4	64	4	64	y	ENSMUSG00000046671.19	Mtfr1l	chr4	protein_coding	mitochondrial fission regulator 1-like
known_NIR_13160	chr4	134260063	134262561	-	134260063	134262393	A5SS	ENSMUST00000102550.10	known	0.60	44	29	44	29	y	0.56	48	37	48	37	y	0.68	58	27	58	27	y	0.51	53	50	53	50	y	0.49	57	60	57	60	y	0.63	39	23	39	23	y	0.52	67	61	67	61	y	0.61	35	22	35	22	y	0.65	52	28	52	28	y	0.43	57	76	57	76	y	0.53	49	44	49	44	y	0.63	64	37	64	37	y	ENSMUSG00000046671.19	Mtfr1l	chr4	protein_coding	mitochondrial fission regulator 1-like
known_NIR_13161	chr4	134563760;134564345	134564078;134565160	-	134563760	134565160	cassetteExon	ENSMUST00000030628.15	known	0.09	5.0	50	5;5	50	y	0.12	3.5	26	4;3	26	y	0.12	4.5	34	5;4	34	y	0.04	2.0	48	3;1	48	n	0.07	5.0	69	7;3	69	y	0.02	0.5	32	1;0	32	n	0.08	3.5	43	1;6	43	n	0.11	3.5	29	3;4	29	y	0.12	4.0	28	5;3	28	y	0.04	2.5	61	2;3	61	y	0.04	1.5	35	0;3	35	n	0.04	2.5	65	2;3	65	y	ENSMUSG00000028826.15	Maco1	chr4	protein_coding	macoilin 1
known_NIR_13162	chr4	134640572	134642200	-	134640506	134642200	A3SS	ENSMUST00000030626.12	known	0.12	30	215	30	215	y	0.12	24	183	24	183	y	0.13	29	196	29	196	y	0.08	22	245	22	245	y	0.10	28	256	28	256	y	0.10	10	87	10	87	y	0.13	40	258	40	258	y	0.06	8	118	8	118	y	0.08	18	207	18	207	y	0.09	25	263	25	263	y	0.10	23	199	23	199	y	0.07	20	270	20	270	y	ENSMUSG00000028822.12	Tmem50a	chr4	protein_coding	transmembrane protein 50A
known_NIR_13163	chr4	134652318	134652604	+	134651793	134652604	A5SS	ENSMUST00000148900.8	known	0.00	4	1063	4	1063	y	0.00	3	900	3	900	y	0.00	0	733	0	733	n	0.00	3	1214	3	1214	y	0.00	2	1221	2	1221	y	0.01	2	333	2	333	y	0.00	2	1265	2	1265	y	0.00	0	562	0	562	n	0.00	1	1078	1	1078	n	0.01	9	1609	9	1609	y	0.00	2	999	2	999	y	0.00	7	1479	7	1479	y	ENSMUSG00000037266.19	Rsrp1	chr4	protein_coding	arginine/serine rich protein 1
known_NIR_13164	chr4	134652743	134654046	+	134652743	134653088	A3SS&ES	ENSMUST00000145364.8	known	0.96	324	15	324	15	y	0.93	281	22	281	22	y	0.88	179	25	179	25	y	0.92	337	29	337	29	y	0.90	337	36	337	36	y	0.90	81	9	81	9	y	0.93	389	29	389	29	y	0.92	184	16	184	16	y	0.93	267	19	267	19	y	0.98	961	16	961	16	y	0.85	198	36	198	36	y	0.95	606	30	606	30	y	ENSMUSG00000037266.19	Rsrp1	chr4	protein_coding	arginine/serine rich protein 1
known_NIR_13165	chr4	134652743	134654046	+	134653461	134654046	5pMXE	ENSMUST00000149003.2	known	0.95	324	17	324	17	y	0.94	281	17	281	17	y	0.96	179	8	179	8	y	0.93	337	24	337	24	y	0.93	337	27	337	27	y	0.91	81	8	81	8	y	0.96	389	15	389	15	y	0.93	184	14	184	14	y	0.96	267	11	267	11	y	0.98	961	15	961	15	y	0.95	198	11	198	11	y	0.97	606	17	606	17	y	ENSMUSG00000037266.19	Rsrp1	chr4	protein_coding	arginine/serine rich protein 1
known_NIR_13166	chr4	134652743;134653132	134653088;134654046	+	134652743	134654046	cassetteExon	ENSMUST00000078084.7	known	0.03	8.5	324	15;2	324	y	0.05	15.0	281	22;8	281	y	0.09	17.0	179	25;9	179	y	0.04	15.5	337	29;2	337	y	0.06	20.5	337	36;5	337	y	0.05	4.5	81	9;0	81	n	0.04	17.5	389	29;6	389	y	0.05	9.0	184	16;2	184	y	0.05	13.0	267	19;7	267	y	0.01	11.0	961	16;6	961	y	0.10	22.5	198	36;9	198	y	0.03	20.5	606	30;11	606	y	ENSMUSG00000037266.19	Rsrp1	chr4	protein_coding	arginine/serine rich protein 1
known_NIR_13167	chr4	134652743;134653461	134653088;134654046	+	134652743	134654046	cassetteExon	ENSMUST00000078084.7	known	0.05	16.0	324	15;17	324	y	0.06	19.5	281	22;17	281	y	0.08	16.5	179	25;8	179	y	0.07	26.5	337	29;24	337	y	0.09	31.5	337	36;27	337	y	0.09	8.5	81	9;8	81	y	0.05	22.0	389	29;15	389	y	0.08	15.0	184	16;14	184	y	0.05	15.0	267	19;11	267	y	0.02	15.5	961	16;15	961	y	0.11	23.5	198	36;11	198	y	0.04	23.5	606	30;17	606	y	ENSMUSG00000037266.19	Rsrp1	chr4	protein_coding	arginine/serine rich protein 1
known_NIR_13168	chr4	134653132	134654046	+	134653132	134653337	A3SS	ENSMUST00000145364.8	known	0.40	2	3	2	3	n	0.57	8	6	8	6	y	0.64	9	5	9	5	y	0.40	2	3	2	3	n	0.42	5	7	5	7	y	-	-	-	-	-	-	0.60	6	4	6	4	y	0.33	2	4	2	4	n	0.78	7	2	7	2	n	0.67	6	3	6	3	n	0.50	9	9	9	9	y	0.58	11	8	11	8	y	ENSMUSG00000037266.19	Rsrp1	chr4	protein_coding	arginine/serine rich protein 1
known_NIR_13169	chr4	134653132	134654046	+	134653461	134654046	A5SS	ENSMUST00000149003.2	known	0.11	2	17	2	17	y	0.32	8	17	8	17	y	0.53	9	8	9	8	y	0.08	2	24	2	24	y	0.16	5	27	5	27	y	0.00	0	8	0	8	n	0.29	6	15	6	15	y	0.12	2	14	2	14	y	0.39	7	11	7	11	y	0.29	6	15	6	15	y	0.45	9	11	9	11	y	0.39	11	17	11	17	y	ENSMUSG00000037266.19	Rsrp1	chr4	protein_coding	arginine/serine rich protein 1
known_NIR_13170	chr4	134653132;134653461	134653337;134654046	+	134653132	134654046	cassetteExon	ENSMUST00000154837.8	known	0.83	10.0	2	3;17	2	y	0.59	11.5	8	6;17	8	y	0.42	6.5	9	5;8	9	y	0.87	13.5	2	3;24	2	y	0.77	17.0	5	7;27	5	y	1.00	4.0	0	0;8	0	n	0.61	9.5	6	4;15	6	y	0.82	9.0	2	4;14	2	y	0.48	6.5	7	2;11	7	y	0.60	9.0	6	3;15	6	y	0.53	10.0	9	9;11	9	y	0.53	12.5	11	8;17	11	y	ENSMUSG00000037266.19	Rsrp1	chr4	protein_coding	arginine/serine rich protein 1
known_NIR_13171	chr4	135051372	135052130	-	135051420	135052130	A3SS	ENSMUST00000105861.8	known	0.00	0	77	0	77	n	0.06	4	67	4	67	y	0.00	0	83	0	83	n	0.00	0	74	0	74	n	0.00	0	103	0	103	n	0.00	0	56	0	56	n	0.02	2	109	2	109	y	0.00	0	36	0	36	n	0.00	0	75	0	75	n	0.00	0	93	0	93	n	0.01	1	77	1	77	n	0.00	0	74	0	74	n	ENSMUSG00000028809.17	Srrm1	chr4	protein_coding	serine/arginine repetitive matrix 1
known_NIR_13172	chr4	135054534;135056356	135056315;135056684	-	135054534	135056684	cassetteExon	ENSMUST00000105861.8	known	0.69	30.5	14	26;35	14	y	0.86	25.0	4	22;28	4	y	0.61	28.0	18	26;30	18	y	0.79	42.0	11	40;44	11	y	0.83	43.5	9	44;43	9	y	0.80	23.5	6	20;27	6	y	0.85	44.5	8	40;49	8	y	0.67	20.5	10	18;23	10	y	0.65	29.5	16	27;32	16	y	0.72	38.0	15	35;41	15	y	0.80	44.0	11	39;49	11	y	0.74	31.0	11	30;32	11	y	ENSMUSG00000028809.17	Srrm1	chr4	protein_coding	serine/arginine repetitive matrix 1
known_NIR_13173	chr4	135065389	135067814	-	135065897	135067814	3pMXE	ENSMUST00000154788.2	known	0.95	40	2	40	2	y	0.97	36	1	36	1	n	0.97	71	2	71	2	y	0.96	69	3	69	3	y	1.00	83	0	83	0	n	1.00	39	0	39	0	n	0.99	81	1	81	1	n	1.00	48	0	48	0	n	0.89	42	5	42	5	y	1.00	64	0	64	0	n	0.98	48	1	48	1	n	0.98	52	1	52	1	n	ENSMUSG00000028809.17	Srrm1	chr4	protein_coding	serine/arginine repetitive matrix 1
known_NIR_13174	chr4	135067915	135068158	-	135067918	135068158	A3SS	ENSMUST00000084846.12	known	0.75	3	1	3	1	n	-	-	-	-	-	-	0.50	6	6	6	6	y	0.50	4	4	4	4	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.60	3	2	3	2	n	0.50	6	6	6	6	y	-	-	-	-	-	-	0.33	3	6	3	6	n	ENSMUSG00000028809.17	Srrm1	chr4	protein_coding	serine/arginine repetitive matrix 1
known_NIR_13175	chr4	135067915	135068158	-	135067933	135068158	A3SS	ENSMUST00000105861.8	known	0.07	3	42	3	42	y	0.00	0	32	0	32	n	0.11	6	50	6	50	y	0.07	4	54	4	54	y	0.00	0	65	0	65	n	0.00	0	28	0	28	n	0.00	0	54	0	54	n	0.03	1	36	1	36	n	0.09	3	29	3	29	y	0.11	6	51	6	51	y	0.00	0	43	0	43	n	0.06	3	50	3	50	y	ENSMUSG00000028809.17	Srrm1	chr4	protein_coding	serine/arginine repetitive matrix 1
known_NIR_13176	chr4	135067918	135068158	-	135067933	135068158	A3SS	ENSMUST00000105861.8	known	0.02	1	42	1	42	n	0.00	0	32	0	32	n	0.11	6	50	6	50	y	0.07	4	54	4	54	y	0.07	5	65	5	65	y	0.00	0	28	0	28	n	0.05	3	54	3	54	y	0.00	0	36	0	36	n	0.06	2	29	2	29	y	0.11	6	51	6	51	y	0.00	0	43	0	43	n	0.11	6	50	6	50	y	ENSMUSG00000028809.17	Srrm1	chr4	protein_coding	serine/arginine repetitive matrix 1
known_NIR_13177	chr4	135069794	135071175	-	135069884	135071175	A3SS	ENSMUST00000105861.8	known	0.00	0	60	0	60	n	0.06	2	29	2	29	y	0.00	0	49	0	49	n	0.03	2	62	2	62	y	0.06	4	59	4	59	y	0.00	0	25	0	25	n	0.00	0	57	0	57	n	0.00	0	38	0	38	n	0.07	3	41	3	41	y	0.00	0	66	0	66	n	0.07	3	40	3	40	y	0.03	2	63	2	63	y	ENSMUSG00000028809.17	Srrm1	chr4	protein_coding	serine/arginine repetitive matrix 1
known_NIR_13178	chr4	135073756	135074046	-	135071980	135074046	A3SS	ENSMUST00000105861.8	known	0.13	5	33	5	33	y	0.23	8	27	8	27	y	0.14	10	63	10	63	y	0.17	10	49	10	49	y	0.20	15	59	15	59	y	0.29	8	20	8	20	y	0.13	9	58	9	58	y	0.11	3	25	3	25	y	0.14	7	43	7	43	y	0.11	5	41	5	41	y	0.09	3	32	3	32	y	0.06	5	74	5	74	y	ENSMUSG00000028809.17	Srrm1	chr4	protein_coding	serine/arginine repetitive matrix 1
known_NIR_13179	chr4	135179883	135191097	-	135174716	135191097	A3SS	ENSMUST00000183807.8	known	1.00	14	0	14	0	n	0.59	10	7	10	7	y	0.93	13	1	13	1	n	0.94	16	1	16	1	n	1.00	19	0	19	0	n	0.92	12	1	12	1	n	0.79	11	3	11	3	y	1.00	14	0	14	0	n	1.00	14	0	14	0	n	1.00	23	0	23	0	n	0.89	16	2	16	2	y	0.73	11	4	11	4	y	ENSMUSG00000028803.19	Nipal3	chr4	protein_coding	NIPA-like domain containing 3
known_NIR_13180	chr4	135590513	135590837	+	135590513	135590834	A3SS	ENSMUST00000105853.10	known	0.24	18	58	18	58	y	0.27	18	48	18	48	y	0.23	29	97	29	97	y	0.31	23	52	23	52	y	0.23	26	89	26	89	y	0.24	18	56	18	56	y	0.21	22	83	22	83	y	0.21	13	48	13	48	y	0.10	7	64	7	64	y	0.29	30	73	30	73	y	0.13	9	59	9	59	y	0.27	20	54	20	54	y	ENSMUSG00000028676.18	Srsf10	chr4	protein_coding	serine and arginine-rich splicing factor 10
known_NIR_13181	chr4	135590887	135594437	+	135590887	135591040	3pMXE	ENSMUST00000105853.10	known	0.68	50	24	50	24	y	0.76	44	14	44	14	y	0.57	50	38	50	38	y	0.65	35	19	35	19	y	0.59	72	51	72	51	y	0.56	28	22	28	22	y	0.66	54	28	54	28	y	0.57	26	20	26	20	y	0.72	33	13	33	13	y	0.57	51	39	51	39	y	0.59	41	28	41	28	y	0.64	49	28	49	28	y	ENSMUSG00000028676.18	Srsf10	chr4	protein_coding	serine and arginine-rich splicing factor 10
known_NIR_13182	chr4	135600410	135600588	-	135600410	135600985	A5SS	ENSMUST00000030436.12	known	0.09	10	98	10	98	y	0.00	0	54	0	54	n	0.05	5	95	5	95	y	0.06	6	93	6	93	y	0.07	10	124	10	124	y	0.09	6	62	6	62	y	0.09	11	108	11	108	y	0.03	2	76	2	76	y	0.02	2	88	2	88	y	0.08	8	96	8	96	y	0.07	7	91	7	91	y	0.08	7	81	7	81	y	ENSMUSG00000028675.13	Pnrc2	chr4	protein_coding	proline-rich nuclear receptor coactivator 2
known_NIR_13183	chr4	135676158	135677861	+	135673851	135677861	A5SS	ENSMUST00000030432.8	known	0.03	15	540	15	540	y	0.02	8	416	8	416	y	0.01	5	477	5	477	y	0.03	17	548	17	548	y	0.03	21	722	21	722	y	0.03	11	338	11	338	y	0.02	17	784	17	784	y	0.04	13	358	13	358	y	0.02	9	428	9	428	y	0.02	18	944	18	944	y	0.02	14	658	14	658	y	0.02	12	619	12	619	y	ENSMUSG00000028672.14	Hmgcl	chr4	protein_coding	3-hydroxy-3-methylglutaryl-Coenzyme A lyase
known_NIR_13184	chr4	135679789;135680744	135680600;135681168	+	135679789	135681168	cassetteExon	ENSMUST00000030432.8	known	0.02	11.0	607	8;14	607	y	0.01	8.0	592	9;7	592	y	0.01	5.5	547	7;4	547	y	0.01	10.0	684	9;11	684	y	0.01	11.0	869	11;11	869	y	0.02	5.5	332	6;5	332	y	0.01	14.0	923	13;15	923	y	0.02	7.5	394	12;3	394	y	0.02	10.5	520	11;10	520	y	0.01	13.0	1196	11;15	1196	y	0.02	14.0	745	10;18	745	y	0.02	11.5	716	8;15	716	y	ENSMUSG00000028672.14	Hmgcl	chr4	protein_coding	3-hydroxy-3-methylglutaryl-Coenzyme A lyase
known_NIR_13185	chr4	135687139	135687288	+	135686097	135687288	A5SS	ENSMUST00000030432.8	known	0.00	0	565	0	565	n	0.00	1	511	1	511	n	0.00	2	443	2	443	y	0.00	2	531	2	531	y	0.00	1	683	1	683	n	0.00	0	323	0	323	n	0.00	2	762	2	762	y	0.00	1	311	1	311	n	0.00	0	454	0	454	n	0.01	6	870	6	870	y	0.00	1	679	1	679	n	0.00	1	553	1	553	n	ENSMUSG00000028672.14	Hmgcl	chr4	protein_coding	3-hydroxy-3-methylglutaryl-Coenzyme A lyase
known_NIR_13186	chr4	135691099	135692537	+	135691099	135692645	A3SS	ENSMUST00000102541.10	known	0.00	0	14	0	14	n	0.00	0	14	0	14	n	0.00	0	37	0	37	n	0.14	2	12	2	12	y	0.03	1	38	1	38	n	0.06	2	33	2	33	y	0.00	0	21	0	21	n	0.03	1	35	1	35	n	0.00	0	21	0	21	n	0.00	0	25	0	25	n	0.00	0	30	0	30	n	0.13	2	13	2	13	y	ENSMUSG00000028671.17	Gale	chr4	protein_coding	galactose-4-epimerase, UDP
known_NIR_13187	chr4	135693427	135693565	+	135693427	135693681	A3SS	ENSMUST00000102541.10	known	0.17	7	34	7	34	y	0.04	1	24	1	24	n	0.15	17	100	17	100	y	0.07	2	28	2	28	y	0.14	13	80	13	80	y	0.11	11	92	11	92	y	0.08	4	44	4	44	y	0.04	3	80	3	80	y	0.07	3	42	3	42	y	0.02	1	63	1	63	n	0.12	9	63	9	63	y	0.00	0	32	0	32	n	ENSMUSG00000028671.17	Gale	chr4	protein_coding	galactose-4-epimerase, UDP
known_NIR_13188	chr4	135779027	135779878	-	135779031	135779878	A3SS	ENSMUST00000137580.8	known	0.01	16	2502	16	2502	y	0.01	32	2753	32	2753	y	0.01	36	3033	36	3033	y	0.00	0	2258	0	2258	n	0.01	22	2995	22	2995	y	0.01	16	1700	16	1700	y	0.00	0	3268	0	3268	n	0.00	0	1626	0	1626	n	0.01	24	2192	24	2192	y	0.00	0	3120	0	3120	n	0.01	16	2832	16	2832	y	0.01	40	2669	40	2669	y	ENSMUSG00000059291.16	Rpl11	chr4	protein_coding	ribosomal protein L11
known_NIR_13189	chr4	135780028	135780281	-	135780028	135780659	A5SS	ENSMUST00000102536.11	known	0.01	2	294	2	294	y	0.01	4	347	4	347	y	0.02	8	383	8	383	y	0.00	0	261	0	261	n	0.01	5	392	5	392	y	0.00	0	207	0	207	n	0.01	6	460	6	460	y	0.00	0	229	0	229	n	0.01	3	323	3	323	y	0.02	8	463	8	463	y	0.01	3	386	3	386	y	0.00	1	374	1	374	n	ENSMUSG00000059291.16	Rpl11	chr4	protein_coding	ribosomal protein L11
known_NIR_13190	chr4	135981953	135982461	+	135981881	135982461	A5SS	ENSMUST00000136812.2	known	0.01	2	158	2	158	y	0.00	0	175	0	175	n	0.00	0	15	0	15	n	0.01	3	232	3	232	y	0.00	0	191	0	191	n	0.00	0	15	0	15	n	0.01	2	212	2	212	y	0.03	1	37	1	37	n	0.01	2	194	2	194	y	0.01	3	336	3	336	y	0.01	3	233	3	233	y	0.01	2	293	2	293	y	ENSMUSG00000001604.15	Tcea3	chr4	protein_coding	transcription elongation factor A (SII), 3
known_NIR_13191	chr4	136013792	136014500	+	136013792	136014383	A3SS	ENSMUST00000144217.8	known	0.29	2	5	2	5	n	0.00	0	1	0	1	n	0.60	3	2	3	2	n	0.00	0	1	0	1	n	0.18	2	9	2	9	y	1.00	5	0	5	0	n	0.00	0	5	0	5	n	1.00	3	0	3	0	n	0.67	2	1	2	1	n	0.42	5	7	5	7	y	0.00	0	1	0	1	n	0.57	4	3	4	3	n	ENSMUSG00000051351.15	Zfp46	chr4	protein_coding	zinc finger protein 46
known_NIR_13192	chr4	136038400	136041398	+	136038400	136041401	A3SS	ENSMUST00000105850.8	known	0.57	4	3	4	3	n	0.57	4	3	4	3	n	0.47	7	8	7	8	y	0.55	6	5	6	5	y	0.50	12	12	12	12	y	0.60	6	4	6	4	y	0.56	9	7	9	7	y	0.43	6	8	6	8	y	0.62	10	6	10	6	y	0.47	7	8	7	8	y	0.44	4	5	4	5	n	0.62	8	5	8	5	y	ENSMUSG00000066037.15	Hnrnpr	chr4	protein_coding	heterogeneous nuclear ribonucleoprotein R
known_NIR_13193	chr4	136038400;136041566	136041398;136043672	+	136038400	136043672	cassetteExon	ENSMUST00000131671.8	known	0.60	18.0	12	4;32	12	y	0.70	11.5	5	4;19	5	y	0.51	20.5	20	7;34	20	y	0.44	15.5	20	6;25	20	y	0.47	26.5	30	12;41	30	y	0.62	14.5	9	6;23	9	y	0.64	19.5	11	9;30	11	y	0.55	16.0	13	6;26	13	y	0.65	16.5	9	10;23	9	y	0.57	17.5	13	7;28	13	y	0.42	6.5	9	4;9	9	y	0.72	20.5	8	8;33	8	y	ENSMUSG00000066037.15	Hnrnpr	chr4	protein_coding	heterogeneous nuclear ribonucleoprotein R
known_NIR_13194	chr4	136038400;136041566	136041401;136043672	+	136038400	136043672	cassetteExon	ENSMUST00000131671.8	known	0.59	17.5	12	3;32	12	y	0.69	11.0	5	3;19	5	y	0.51	21.0	20	8;34	20	y	0.43	15.0	20	5;25	20	y	0.47	26.5	30	12;41	30	y	0.60	13.5	9	4;23	9	y	0.63	18.5	11	7;30	11	y	0.57	17.0	13	8;26	13	y	0.62	14.5	9	6;23	9	y	0.58	18.0	13	8;28	13	y	0.44	7.0	9	5;9	9	y	0.70	19.0	8	5;33	8	y	ENSMUSG00000066037.15	Hnrnpr	chr4	protein_coding	heterogeneous nuclear ribonucleoprotein R
known_NIR_13195	chr4	136039058	136041398	+	136038400	136041398	A5SS	ENSMUST00000148843.10	known	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.50	6	6	6	6	y	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.18	2	9	2	9	y	0.33	3	6	3	6	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.20	2	8	2	8	y	ENSMUSG00000066037.15	Hnrnpr	chr4	protein_coding	heterogeneous nuclear ribonucleoprotein R
known_NIR_13196	chr4	136039058	136041401	+	136038400	136041401	A5SS	ENSMUST00000105850.8	known	0.25	1	3	1	3	n	0.25	1	3	1	3	n	0.33	4	8	4	8	y	0.00	0	5	0	5	n	0.20	3	12	3	12	y	0.33	2	4	2	4	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.40	4	6	4	6	y	0.20	2	8	2	8	y	0.00	0	5	0	5	n	0.29	2	5	2	5	n	ENSMUSG00000066037.15	Hnrnpr	chr4	protein_coding	heterogeneous nuclear ribonucleoprotein R
known_NIR_13197	chr4	136039058	136043672	+	136038400	136043672	A5SS	ENSMUST00000131671.8	known	0.20	3	12	3	12	y	0.55	6	5	6	5	y	0.05	1	20	1	20	n	0.05	1	20	1	20	n	0.23	9	30	9	30	y	0.00	0	9	0	9	n	0.27	4	11	4	11	y	0.13	2	13	2	13	y	0.10	1	9	1	9	n	0.00	0	13	0	13	n	0.10	1	9	1	9	n	0.27	3	8	3	8	y	ENSMUSG00000066037.15	Hnrnpr	chr4	protein_coding	heterogeneous nuclear ribonucleoprotein R
known_NIR_13198	chr4	136039058	136043672	+	136041566	136043672	A5SS&ES	ENSMUST00000105850.8	known	0.09	3	32	3	32	y	0.24	6	19	6	19	y	0.03	1	34	1	34	n	0.04	1	25	1	25	n	0.18	9	41	9	41	y	0.00	0	23	0	23	n	0.12	4	30	4	30	y	0.07	2	26	2	26	y	0.04	1	23	1	23	n	0.00	0	28	0	28	n	0.10	1	9	1	9	n	0.08	3	33	3	33	y	ENSMUSG00000066037.15	Hnrnpr	chr4	protein_coding	heterogeneous nuclear ribonucleoprotein R
known_NIR_13199	chr4	136039058;136041566	136041398;136043672	+	136039058	136043672	cassetteExon	ENSMUST00000125696.8	known	0.84	16.0	3	0;32	3	n	0.61	9.5	6	0;19	6	n	0.95	17.5	1	1;34	1	n	0.94	15.5	1	6;25	1	n	0.69	20.5	9	0;41	9	n	1.00	11.5	0	0;23	0	n	0.80	16.0	4	2;30	4	y	0.88	14.5	2	3;26	2	y	0.92	11.5	1	0;23	1	n	1.00	14.0	0	0;28	0	n	0.82	4.5	1	0;9	1	n	0.85	17.5	3	2;33	3	y	ENSMUSG00000066037.15	Hnrnpr	chr4	protein_coding	heterogeneous nuclear ribonucleoprotein R
known_NIR_13200	chr4	136039058;136041566	136041401;136043672	+	136039058	136043672	cassetteExon	ENSMUST00000125696.8	known	0.85	16.5	3	1;32	3	n	0.62	10.0	6	1;19	6	n	0.95	19.0	1	4;34	1	n	0.93	12.5	1	0;25	1	n	0.71	22.0	9	3;41	9	y	1.00	12.5	0	2;23	0	n	0.79	15.0	4	0;30	4	n	0.87	13.0	2	0;26	2	n	0.93	13.5	1	4;23	1	n	1.00	15.0	0	2;28	0	n	0.82	4.5	1	0;9	1	n	0.85	17.5	3	2;33	3	y	ENSMUSG00000066037.15	Hnrnpr	chr4	protein_coding	heterogeneous nuclear ribonucleoprotein R
known_NIR_13201	chr4	136043795	136044395	+	136043790	136044395	A5SS	ENSMUST00000131671.8	known	0.09	4	42	4	42	y	0.25	8	24	8	24	y	0.14	9	57	9	57	y	0.11	5	40	5	40	y	0.12	10	72	10	72	y	0.09	3	29	3	29	y	0.12	5	37	5	37	y	0.16	7	38	7	38	y	0.07	3	39	3	39	y	0.07	4	51	4	51	y	0.13	6	41	6	41	y	0.09	4	42	4	42	y	ENSMUSG00000066037.15	Hnrnpr	chr4	protein_coding	heterogeneous nuclear ribonucleoprotein R
known_NIR_13202	chr4	136248754	136267667	+	136248754;136266527	136266436;136267667	ES	ENSMUST00000170102.8	known	0.00	0	2.0	0	1;3	n	1.00	4	0.0	4	0;0	n	0.53	4	3.5	4	2;5	y	0.00	0	3.5	0	3;4	n	0.71	6	2.5	6	3;2	y	0.00	0	2.0	0	3;1	n	0.86	3	0.5	3	1;0	n	0.00	0	2.5	0	2;3	n	0.86	3	0.5	3	0;1	n	0.71	5	2.0	5	3;1	n	0.62	4	2.5	4	2;3	n	1.00	6	0.0	6	0;0	n	ENSMUSG00000001089.15	Luzp1	chr4	protein_coding	leucine zipper protein 1
known_NIR_13203	chr4	136304515;136309410	136309351;136320276	-	136304515	136320276	cassetteExon	ENSMUST00000116273.9	known	0.67	8.0	4	9;7	4	y	0.33	1.0	2	2;0	2	n	0.38	15.0	24	11;19	24	y	0.60	9.0	6	6;12	6	y	0.79	11.0	3	13;9	3	y	0.73	11.0	4	12;10	4	y	0.41	8.5	12	5;12	12	y	0.67	8.0	4	10;6	4	y	0.56	7.5	6	10;5	6	y	0.85	11.5	2	12;11	2	y	0.67	6.0	3	8;4	3	y	0.69	13.5	6	14;13	6	y	ENSMUSG00000036940.16	Kdm1a	chr4	protein_coding	lysine (K)-specific demethylase 1A
known_NIR_13204	chr4	137049930	137056024	-	137048503	137056024	A3SS	ENSMUST00000051477.13	known	0.01	4	402	4	402	y	0.01	5	380	5	380	y	0.03	16	553	16	553	y	0.01	3	414	3	414	y	0.01	4	469	4	469	y	0.00	1	332	1	332	n	0.03	17	553	17	553	y	0.04	11	303	11	303	y	0.03	10	285	10	285	y	0.03	16	489	16	489	y	0.04	18	386	18	386	y	0.03	13	475	13	475	y	ENSMUSG00000006699.18	Cdc42	chr4	protein_coding	cell division cycle 42
known_NIR_13205	chr4	137341172	137343027	+	137341172	137343024	A3SS	ENSMUST00000105840.8	known	0.61	20	13	20	13	y	0.40	14	21	14	21	y	0.40	19	28	19	28	y	0.38	15	25	15	25	y	0.46	33	39	33	39	y	0.41	12	17	12	17	y	0.44	15	19	15	19	y	0.51	20	19	20	19	y	0.29	10	24	10	24	y	0.39	24	37	24	37	y	0.24	7	22	7	22	y	0.44	18	23	18	23	y	ENSMUSG00000043411.16	Usp48	chr4	protein_coding	ubiquitin specific peptidase 48
known_NIR_13206	chr4	137347285	137348373	+	137343818	137348373	A5SS	ENSMUST00000105840.8	known	0.00	0	33	0	33	n	0.12	3	21	3	21	y	0.00	0	51	0	51	n	0.00	0	53	0	53	n	0.02	1	50	1	50	n	0.03	1	30	1	30	n	0.00	0	42	0	42	n	0.00	0	52	0	52	n	0.03	1	38	1	38	n	0.09	5	53	5	53	y	0.00	0	34	0	34	n	0.08	4	46	4	46	y	ENSMUSG00000043411.16	Usp48	chr4	protein_coding	ubiquitin specific peptidase 48
known_NIR_13207	chr4	137350699	137352471	+	137350699	137352468	A3SS	ENSMUST00000105840.8	known	0.65	17	9	17	9	y	0.85	40	7	40	7	y	0.60	40	27	40	27	y	0.61	31	20	31	20	y	0.84	53	10	53	10	y	0.81	25	6	25	6	y	0.71	34	14	34	14	y	0.67	22	11	22	11	y	0.85	34	6	34	6	y	0.72	29	11	29	11	y	0.79	37	10	37	10	y	0.74	32	11	32	11	y	ENSMUSG00000043411.16	Usp48	chr4	protein_coding	ubiquitin specific peptidase 48
known_NIR_13208	chr4	137350826	137352471	+	137350699	137352471	A5SS	ENSMUST00000105839.8	known	0.00	0	17	0	17	n	0.00	0	40	0	40	n	0.02	1	40	1	40	n	0.00	0	31	0	31	n	0.02	1	53	1	53	n	0.00	0	25	0	25	n	0.00	0	34	0	34	n	0.04	1	22	1	22	n	0.00	0	34	0	34	n	0.06	2	29	2	29	y	0.00	0	37	0	37	n	0.00	0	32	0	32	n	ENSMUSG00000043411.16	Usp48	chr4	protein_coding	ubiquitin specific peptidase 48
known_NIR_13209	chr4	137362319	137364245	+	137362319	137371654	A3SS	ENSMUST00000152985.2	known	0.62	5	3	5	3	n	0.79	11	3	11	3	y	0.79	15	4	15	4	y	0.89	8	1	8	1	n	1.00	17	0	17	0	n	1.00	6	0	6	0	n	1.00	15	0	15	0	n	0.62	5	3	5	3	n	0.80	8	2	8	2	y	0.64	7	4	7	4	y	1.00	5	0	5	0	n	1.00	13	0	13	0	n	ENSMUSG00000043411.16	Usp48	chr4	protein_coding	ubiquitin specific peptidase 48
known_NIR_13210	chr4	137362319	137365071	+	137362319	137364245	3pMXE	ENSMUST00000131755.2	known	0.90	46	5	46	5	y	0.79	42	11	42	11	y	0.72	39	15	39	15	y	0.84	41	8	41	8	y	0.78	60	17	60	17	y	0.81	25	6	25	6	y	0.81	62	15	62	15	y	0.85	29	5	29	5	y	0.83	39	8	39	8	y	0.91	68	7	68	7	y	0.89	41	5	41	5	y	0.79	50	13	50	13	y	ENSMUSG00000043411.16	Usp48	chr4	protein_coding	ubiquitin specific peptidase 48
known_NIR_13211	chr4	137362319	137365071	+	137362319	137371654	A3SS	ENSMUST00000152985.2	known	0.94	46	3	46	3	y	0.93	42	3	42	3	y	0.91	39	4	39	4	y	0.98	41	1	41	1	n	1.00	60	0	60	0	n	1.00	25	0	25	0	n	1.00	62	0	62	0	n	0.91	29	3	29	3	y	0.95	39	2	39	2	y	0.94	68	4	68	4	y	1.00	41	0	41	0	n	1.00	50	0	50	0	n	ENSMUSG00000043411.16	Usp48	chr4	protein_coding	ubiquitin specific peptidase 48
known_NIR_13212	chr4	137362319	137365076	+	137362319	137364245	A3SS&ES	ENSMUST00000055131.13	known	0.58	7	5	7	5	y	0.52	12	11	12	11	y	0.29	6	15	6	15	y	0.33	4	8	4	8	y	0.15	3	17	3	17	y	0.45	5	6	5	6	y	0.21	4	15	4	15	y	0.00	0	5	0	5	n	0.38	5	8	5	8	y	0.42	5	7	5	7	y	0.58	7	5	7	5	y	0.32	6	13	6	13	y	ENSMUSG00000043411.16	Usp48	chr4	protein_coding	ubiquitin specific peptidase 48
known_NIR_13213	chr4	137362319	137365076	+	137362319	137365071	A3SS	ENSMUST00000105840.8	known	0.13	7	46	7	46	y	0.22	12	42	12	42	y	0.13	6	39	6	39	y	0.09	4	41	4	41	y	0.05	3	60	3	60	y	0.17	5	25	5	25	y	0.06	4	62	4	62	y	0.00	0	29	0	29	n	0.11	5	39	5	39	y	0.07	5	68	5	68	y	0.15	7	41	7	41	y	0.11	6	50	6	50	y	ENSMUSG00000043411.16	Usp48	chr4	protein_coding	ubiquitin specific peptidase 48
known_NIR_13214	chr4	137362319	137365076	+	137362319	137371654	A3SS	ENSMUST00000152985.2	known	0.70	7	3	7	3	y	0.80	12	3	12	3	y	0.60	6	4	6	4	y	0.80	4	1	4	1	n	1.00	3	0	3	0	n	1.00	5	0	5	0	n	1.00	4	0	4	0	n	0.00	0	3	0	3	n	0.71	5	2	5	2	n	0.56	5	4	5	4	n	1.00	7	0	7	0	n	1.00	6	0	6	0	n	ENSMUSG00000043411.16	Usp48	chr4	protein_coding	ubiquitin specific peptidase 48
known_NIR_13215	chr4	137362319;137364298	137364245;137365071	+	137362319	137365071	cassetteExon	ENSMUST00000105840.8	known	0.05	2.5	46	5;0	46	n	0.19	10.0	42	11;9	42	y	0.25	13.0	39	15;11	39	y	0.14	6.5	41	8;5	41	y	0.18	13.5	60	17;10	60	y	0.15	4.5	25	6;3	25	y	0.17	13.0	62	15;11	62	y	0.18	6.5	29	5;8	29	y	0.14	6.5	39	8;5	39	y	0.07	5.5	68	7;4	68	y	0.10	4.5	41	5;4	41	y	0.19	11.5	50	13;10	50	y	ENSMUSG00000043411.16	Usp48	chr4	protein_coding	ubiquitin specific peptidase 48
known_NIR_13216	chr4	137366621	137371654	+	137362319	137371654	A5SS	ENSMUST00000152985.2	known	0.97	99	3	99	3	y	0.97	108	3	108	3	y	0.97	112	4	112	4	y	0.99	99	1	99	1	n	1.00	113	0	113	0	n	1.00	63	0	63	0	n	1.00	110	0	110	0	n	0.95	57	3	57	3	y	0.97	63	2	63	2	y	0.96	92	4	92	4	y	1.00	101	0	101	0	n	1.00	89	0	89	0	n	ENSMUSG00000043411.16	Usp48	chr4	protein_coding	ubiquitin specific peptidase 48
known_NIR_13217	chr4	137449268;137451134	137451057;137452003	+	137449268	137452003	cassetteExon	ENSMUST00000105835.8	known	1.00	0.5	0	1;0	0	n	0.09	0.5	5	1;0	5	n	0.00	0.0	1	0;0	1	n	-	-	-	-	-	-	0.30	3.0	7	0;6	7	n	0.14	0.5	3	1;0	3	n	0.47	3.5	4	4;3	4	y	1.00	1.0	0	2;0	0	n	0.25	1.0	3	2;0	3	n	0.00	0.0	4	0;0	4	n	0.18	1.5	7	1;2	7	n	0.78	3.5	1	5;2	1	n	ENSMUSG00000041351.17	Rap1gap	chr4	protein_coding	Rap1 GTPase-activating protein
known_NIR_13218	chr4	137454386	137454988	+	137454386	137455041	A3SS	ENSMUST00000105835.8	known	0.71	5	2	5	2	n	0.94	15	1	15	1	n	1.00	8	0	8	0	n	0.85	11	2	11	2	y	0.88	14	2	14	2	y	0.88	7	1	7	1	n	0.57	4	3	4	3	n	1.00	9	0	9	0	n	0.67	4	2	4	2	n	1.00	15	0	15	0	n	0.91	10	1	10	1	n	1.00	6	0	6	0	n	ENSMUSG00000041351.17	Rap1gap	chr4	protein_coding	Rap1 GTPase-activating protein
known_NIR_13219	chr4	137455090	137455571	+	137455090	137455540	A3SS	ENSMUST00000105835.8	known	1.00	11	0	11	0	n	0.75	9	3	9	3	y	0.60	6	4	6	4	y	1.00	7	0	7	0	n	0.69	11	5	11	5	y	0.60	6	4	6	4	y	0.92	12	1	12	1	n	1.00	6	0	6	0	n	0.75	3	1	3	1	n	0.71	12	5	12	5	y	1.00	2	0	2	0	n	0.50	6	6	6	6	y	ENSMUSG00000041351.17	Rap1gap	chr4	protein_coding	Rap1 GTPase-activating protein
known_NIR_13220	chr4	137589692	137641079	+	137589692;137632466	137632381;137641079	ES	ENSMUST00000102518.10	known	0.84	89	17.0	89	13;21	y	0.87	69	10.5	69	12;9	y	0.83	45	9.0	45	7;11	y	0.84	160	31.5	160	32;31	y	0.86	204	34.5	204	32;37	y	0.87	49	7.5	49	7;8	y	0.84	119	23.0	119	22;24	y	0.88	76	10.0	76	9;11	y	0.80	83	20.5	83	17;24	y	0.85	142	25.5	142	19;32	y	0.90	105	11.5	105	7;16	y	0.81	107	25.0	107	23;27	y	ENSMUSG00000057530.15	Ece1	chr4	protein_coding	endothelin converting enzyme 1
known_NIR_13221	chr4	137640940	137641079	+	137589692	137641079	A5SS	ENSMUST00000130407.3	known	0.00	0	89	0	89	n	0.00	0	69	0	69	n	0.00	0	45	0	45	n	0.00	0	160	0	160	n	0.00	1	204	1	204	n	0.02	1	49	1	49	n	0.00	0	119	0	119	n	0.00	0	76	0	76	n	0.02	2	83	2	83	y	0.00	0	142	0	142	n	0.00	0	105	0	105	n	0.01	1	107	1	107	n	ENSMUSG00000057530.15	Ece1	chr4	protein_coding	endothelin converting enzyme 1
known_NIR_13222	chr4	137640940	137641079	+	137632466	137641079	A5SS	ENSMUST00000102518.10	known	0.00	0	21	0	21	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	31	0	31	n	0.03	1	37	1	37	n	0.11	1	8	1	8	n	0.00	0	24	0	24	n	0.00	0	11	0	11	n	0.08	2	24	2	24	y	0.00	0	32	0	32	n	0.00	0	16	0	16	n	0.04	1	27	1	27	n	ENSMUSG00000057530.15	Ece1	chr4	protein_coding	endothelin converting enzyme 1
known_NIR_13223	chr4	137772729	137810204	+	137772729	137785260	3pMXE	ENSMUST00000132194.8	known	0.19	3	13	3	13	y	0.50	3	3	3	3	n	0.29	10	24	10	24	y	0.10	2	18	2	18	y	0.33	8	16	8	16	y	0.40	10	15	10	15	y	0.19	5	21	5	21	y	0.18	3	14	3	14	y	0.11	1	8	1	8	n	0.21	3	11	3	11	y	0.33	4	8	4	8	y	0.40	4	6	4	6	y	ENSMUSG00000028760.17	Eif4g3	chr4	protein_coding	eukaryotic translation initiation factor 4 gamma, 3
known_NIR_13224	chr4	137772729	137810204	+	137772729;137785388	137785260;137810204	ES	ENSMUST00000139759.8	known	0.25	3	9.0	3	13;5	y	0.32	3	6.5	3	3;10	y	0.22	10	36.5	10	24;49	y	0.09	2	20.0	2	18;22	y	0.29	8	20.0	8	16;24	y	0.42	10	14.0	10	15;13	y	0.21	5	19.0	5	21;17	y	0.18	3	13.5	3	14;13	y	0.09	1	10.0	1	8;12	n	0.19	3	12.5	3	11;14	y	0.31	4	9.0	4	8;10	y	0.30	4	9.5	4	6;13	y	ENSMUSG00000028760.17	Eif4g3	chr4	protein_coding	eukaryotic translation initiation factor 4 gamma, 3
known_NIR_13225	chr4	137810299	137824063	+	137810299;137811681	137811568;137824063	ES	ENSMUST00000058133.10	known	0.97	15	0.5	15	0;1	n	0.85	11	2.0	11	1;3	n	0.87	44	6.5	44	11;2	y	0.98	26	0.5	26	0;1	n	0.89	34	4.0	34	3;5	y	0.91	26	2.5	26	0;5	n	0.91	32	3.0	32	2;4	y	0.92	30	2.5	30	2;3	y	0.91	15	1.5	15	2;1	n	0.91	15	1.5	15	2;1	n	0.87	17	2.5	17	1;4	n	0.84	23	4.5	23	6;3	y	ENSMUSG00000028760.17	Eif4g3	chr4	protein_coding	eukaryotic translation initiation factor 4 gamma, 3
known_NIR_13226	chr4	137810299	137824063	+	137810299;137814876	137814844;137824063	ES	ENSMUST00000105830.9	known	1.00	15	0.0	15	0;0	n	0.81	11	2.5	11	3;2	y	0.90	44	5.0	44	3;7	y	0.96	26	1.0	26	1;1	n	1.00	34	0.0	34	0;0	n	0.98	26	0.5	26	0;1	n	0.85	32	5.5	32	5;6	y	0.98	30	0.5	30	0;1	n	1.00	15	0.0	15	0;0	n	1.00	15	0.0	15	0;0	n	0.97	17	0.5	17	0;1	n	0.96	23	1.0	23	1;1	n	ENSMUSG00000028760.17	Eif4g3	chr4	protein_coding	eukaryotic translation initiation factor 4 gamma, 3
known_NIR_13227	chr4	137810299;137814876	137814844;137824063	+	137810299;137811681	137811568;137824063	MXE	ENSMUST00000058133.10	known	0.00	0.0	0.5	0;0	0;1	n	0.56	2.5	2.0	3;2	1;3	n	0.43	5.0	6.5	3;7	11;2	y	0.67	1.0	0.5	1;1	0;1	n	0.00	0.0	4.0	0;0	3;5	n	0.17	0.5	2.5	0;1	0;5	n	0.65	5.5	3.0	5;6	2;4	y	0.17	0.5	2.5	0;1	2;3	n	0.00	0.0	1.5	0;0	2;1	n	0.00	0.0	1.5	0;0	2;1	n	0.17	0.5	2.5	0;1	1;4	n	0.18	1.0	4.5	1;1	6;3	n	ENSMUSG00000028760.17	Eif4g3	chr4	protein_coding	eukaryotic translation initiation factor 4 gamma, 3
known_NIR_13228	chr4	137832747	137847657	+	137832747	137842464	3pMXE	ENSMUST00000058133.10	known	1.00	11	0	11	0	n	0.79	11	3	11	3	y	0.94	46	3	46	3	y	0.91	21	2	21	2	y	0.97	34	1	34	1	n	0.88	29	4	29	4	y	1.00	21	0	21	0	n	0.95	18	1	18	1	n	1.00	14	0	14	0	n	1.00	25	0	25	0	n	1.00	13	0	13	0	n	1.00	18	0	18	0	n	ENSMUSG00000028760.17	Eif4g3	chr4	protein_coding	eukaryotic translation initiation factor 4 gamma, 3
known_NIR_13229	chr4	137832747	137847657	+	137832747	137847660	A3SS	ENSMUST00000105830.9	known	0.69	11	5	11	5	y	0.52	11	10	11	10	y	0.69	46	21	46	21	y	0.66	21	11	21	11	y	0.74	34	12	34	12	y	0.71	29	12	29	12	y	0.45	21	26	21	26	y	0.67	18	9	18	9	y	0.58	14	10	14	10	y	0.60	25	17	25	17	y	0.65	13	7	13	7	y	0.69	18	8	18	8	y	ENSMUSG00000028760.17	Eif4g3	chr4	protein_coding	eukaryotic translation initiation factor 4 gamma, 3
known_NIR_13230	chr4	137832747	137847660	+	137832747	137842464	3pMXE	ENSMUST00000058133.10	known	1.00	5	0	5	0	n	0.77	10	3	10	3	y	0.88	21	3	21	3	y	0.85	11	2	11	2	y	0.92	12	1	12	1	n	0.75	12	4	12	4	y	1.00	26	0	26	0	n	0.90	9	1	9	1	n	1.00	10	0	10	0	n	1.00	17	0	17	0	n	1.00	7	0	7	0	n	1.00	8	0	8	0	n	ENSMUSG00000028760.17	Eif4g3	chr4	protein_coding	eukaryotic translation initiation factor 4 gamma, 3
known_NIR_13231	chr4	137853945	137873596	+	137853945	137854044	3pMXE	ENSMUST00000105830.9	known	0.98	44	1	44	1	n	0.97	29	1	29	1	n	0.99	81	1	81	1	n	0.97	29	1	29	1	n	0.96	55	2	55	2	y	0.97	63	2	63	2	y	1.00	60	0	60	0	n	0.95	40	2	40	2	y	1.00	51	0	51	0	n	0.94	48	3	48	3	y	0.97	35	1	35	1	n	0.96	47	2	47	2	y	ENSMUSG00000028760.17	Eif4g3	chr4	protein_coding	eukaryotic translation initiation factor 4 gamma, 3
known_NIR_13232	chr4	137905321	137907858	+	137905321	137907801	A3SS	ENSMUST00000084215.12	known	0.48	20	22	20	22	y	0.54	13	11	13	11	y	0.41	34	49	34	49	y	0.38	17	28	17	28	y	0.40	24	36	24	36	y	0.41	18	26	18	26	y	0.56	35	27	35	27	y	0.48	23	25	23	25	y	0.56	27	21	27	21	y	0.46	28	33	28	33	y	0.41	17	24	17	24	y	0.41	17	24	17	24	y	ENSMUSG00000028760.17	Eif4g3	chr4	protein_coding	eukaryotic translation initiation factor 4 gamma, 3
known_NIR_13233	chr4	137944051	137949400	+	137944051;137949034	137948837;137949400	ES	ENSMUST00000105827.8	known	0.11	5	38.5	5	24;53	y	0.18	7	31.0	7	21;41	y	0.14	9	54.0	9	27;81	y	0.19	15	65.0	15	44;86	y	0.23	23	76.5	23	52;101	y	0.19	9	38.0	9	28;48	y	0.19	13	54.5	13	32;77	y	0.23	15	51.0	15	39;63	y	0.28	16	40.5	16	25;56	y	0.27	22	60.0	22	54;66	y	0.19	10	41.5	10	33;50	y	0.24	20	62.5	20	34;91	y	ENSMUSG00000028759.14	Hp1bp3	chr4	protein_coding	heterochromatin protein 1, binding protein 3
known_NIR_13234	chr4	137944051	137949400	+	137949034	137949400	A5SS&ES	ENSMUST00000105826.8	known	0.09	5	53	5	53	y	0.15	7	41	7	41	y	0.10	9	81	9	81	y	0.15	15	86	15	86	y	0.19	23	101	23	101	y	0.16	9	48	9	48	y	0.14	13	77	13	77	y	0.19	15	63	15	63	y	0.22	16	56	16	56	y	0.25	22	66	22	66	y	0.17	10	50	10	50	y	0.18	20	91	20	91	y	ENSMUSG00000028759.14	Hp1bp3	chr4	protein_coding	heterochromatin protein 1, binding protein 3
known_NIR_13235	chr4	137944051;137949029	137948837;137949400	+	137944051	137949400	cassetteExon	ENSMUST00000097836.10	known	0.71	12.5	5	24;1	5	n	0.67	14.0	7	21;7	7	y	0.64	16.0	9	27;5	9	y	0.63	25.5	15	44;7	15	y	0.57	30.0	23	52;8	23	y	0.67	18.5	9	28;9	9	y	0.61	20.5	13	32;9	13	y	0.59	21.5	15	39;4	15	y	0.48	14.5	16	25;4	16	y	0.56	28.5	22	54;3	22	y	0.64	17.5	10	33;2	10	y	0.48	18.5	20	34;3	20	y	ENSMUSG00000028759.14	Hp1bp3	chr4	protein_coding	heterochromatin protein 1, binding protein 3
known_NIR_13236	chr4	137944110	137948837	+	137944051	137948837	A5SS	ENSMUST00000105827.8	known	0.00	0	24	0	24	n	0.00	0	21	0	21	n	0.07	2	27	2	27	y	0.02	1	44	1	44	n	0.07	4	52	4	52	y	0.00	0	28	0	28	n	0.06	2	32	2	32	y	0.03	1	39	1	39	n	0.00	0	25	0	25	n	0.04	2	54	2	54	y	0.00	0	33	0	33	n	0.03	1	34	1	34	n	ENSMUSG00000028759.14	Hp1bp3	chr4	protein_coding	heterochromatin protein 1, binding protein 3
known_NIR_13237	chr4	137944605	137948837	+	137944051	137948837	A5SS	ENSMUST00000105827.8	known	0.14	4	24	4	24	y	0.12	3	21	3	21	y	0.18	6	27	6	27	y	0.24	14	44	14	44	y	0.10	6	52	6	52	y	0.10	3	28	3	28	y	0.16	6	32	6	32	y	0.07	3	39	3	39	y	0.19	6	25	6	25	y	0.00	0	54	0	54	n	0.11	4	33	4	33	y	0.00	0	34	0	34	n	ENSMUSG00000028759.14	Hp1bp3	chr4	protein_coding	heterochromatin protein 1, binding protein 3
known_NIR_13238	chr4	137944605	137948837	+	137944110	137948837	A5SS	ENSMUST00000105826.8	known	1.00	4	0	4	0	n	1.00	3	0	3	0	n	0.75	6	2	6	2	n	0.93	14	1	14	1	n	0.60	6	4	6	4	y	1.00	3	0	3	0	n	0.75	6	2	6	2	n	0.75	3	1	3	1	n	1.00	6	0	6	0	n	0.00	0	2	0	2	n	1.00	4	0	4	0	n	0.00	0	1	0	1	n	ENSMUSG00000028759.14	Hp1bp3	chr4	protein_coding	heterochromatin protein 1, binding protein 3
known_NIR_13239	chr4	137944605	137949400	+	137944051	137949400	A5SS	ENSMUST00000097836.10	known	0.17	1	5	1	5	n	0.30	3	7	3	7	y	0.31	4	9	4	9	y	0.12	2	15	2	15	y	0.00	0	23	0	23	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.12	2	15	2	15	y	0.00	0	16	0	16	n	0.00	0	22	0	22	n	0.09	1	10	1	10	n	0.13	3	20	3	20	y	ENSMUSG00000028759.14	Hp1bp3	chr4	protein_coding	heterochromatin protein 1, binding protein 3
known_NIR_13240	chr4	137944605	137949400	+	137949034	137949400	A5SS&ES	ENSMUST00000105827.8	known	0.02	1	53	1	53	n	0.07	3	41	3	41	y	0.05	4	81	4	81	y	0.02	2	86	2	86	y	0.00	0	101	0	101	n	0.00	0	48	0	48	n	0.00	0	77	0	77	n	0.03	2	63	2	63	y	0.00	0	56	0	56	n	0.00	0	66	0	66	n	0.02	1	50	1	50	n	0.03	3	91	3	91	y	ENSMUSG00000028759.14	Hp1bp3	chr4	protein_coding	heterochromatin protein 1, binding protein 3
known_NIR_13241	chr4	137944605;137949029	137948837;137949400	+	137944605	137949400	cassetteExon	ENSMUST00000137851.8	known	0.71	2.5	1	4;1	1	n	0.62	5.0	3	3;7	3	y	0.58	5.5	4	6;5	4	y	0.84	10.5	2	14;7	2	y	1.00	7.0	0	6;8	0	n	1.00	6.0	0	3;9	0	n	1.00	7.5	0	6;9	0	n	0.64	3.5	2	3;4	2	n	1.00	5.0	0	6;4	0	n	1.00	1.5	0	0;3	0	n	0.75	3.0	1	4;2	1	n	0.33	1.5	3	0;3	3	n	ENSMUSG00000028759.14	Hp1bp3	chr4	protein_coding	heterochromatin protein 1, binding protein 3
known_NIR_13242	chr4	137944605;137949034	137948837;137949400	+	137944605	137949400	cassetteExon	ENSMUST00000137851.8	known	0.97	28.5	1	4;53	1	n	0.88	22.0	3	3;41	3	y	0.92	43.5	4	6;81	4	y	0.96	50.0	2	14;86	2	y	1.00	53.5	0	6;101	0	n	1.00	25.5	0	3;48	0	n	1.00	41.5	0	6;77	0	n	0.94	33.0	2	3;63	2	y	1.00	31.0	0	6;56	0	n	1.00	33.0	0	0;66	0	n	0.96	27.0	1	4;50	1	n	0.94	45.5	3	0;91	3	n	ENSMUSG00000028759.14	Hp1bp3	chr4	protein_coding	heterochromatin protein 1, binding protein 3
known_NIR_13243	chr4	137949029	137949400	+	137949034	137949400	A5SS	ENSMUST00000105827.8	known	0.02	1	53	1	53	n	0.15	7	41	7	41	y	0.06	5	81	5	81	y	0.08	7	86	7	86	y	0.07	8	101	8	101	y	0.16	9	48	9	48	y	0.10	9	77	9	77	y	0.06	4	63	4	63	y	0.07	4	56	4	56	y	0.04	3	66	3	66	y	0.04	2	50	2	50	y	0.03	3	91	3	91	y	ENSMUSG00000028759.14	Hp1bp3	chr4	protein_coding	heterochromatin protein 1, binding protein 3
known_NIR_13244	chr4	137949499	137950840	+	137949499	137950801	A3SS	ENSMUST00000105827.8	known	0.12	12	84	12	84	y	0.08	7	76	7	76	y	0.07	9	121	9	121	y	0.12	16	121	16	121	y	0.12	22	168	22	168	y	0.10	10	90	10	90	y	0.12	22	159	22	159	y	0.14	16	99	16	99	y	0.16	15	80	15	80	y	0.18	26	122	26	122	y	0.06	6	87	6	87	y	0.10	15	134	15	134	y	ENSMUSG00000028759.14	Hp1bp3	chr4	protein_coding	heterochromatin protein 1, binding protein 3
known_NIR_13245	chr4	138162190;138163710	138163491;138164939	+	138162190	138164939	cassetteExon	ENSMUST00000044058.11	known	0.29	27.5	67	32;23	67	y	0.17	15.5	74	14;17	74	y	0.20	23.0	92	27;19	92	y	0.20	22.5	92	16;29	92	y	0.27	37.0	99	38;36	99	y	0.22	12.5	44	12;13	44	y	0.25	28.5	86	22;35	86	y	0.30	19.5	46	22;17	46	y	0.19	20.5	89	18;23	89	y	0.22	24.0	87	19;29	87	y	0.24	24.5	78	24;25	78	y	0.25	25.5	76	25;26	76	y	ENSMUSG00000041241.13	Mul1	chr4	protein_coding	mitochondrial ubiquitin ligase activator of NFKB 1
known_NIR_13246	chr4	138165719	138166262	+	138165673	138166262	A5SS	ENSMUST00000044058.11	known	0.02	1	51	1	51	n	0.02	1	47	1	47	n	0.01	1	82	1	82	n	0.00	0	43	0	43	n	0.02	2	85	2	85	y	0.04	2	44	2	44	y	0.00	0	51	0	51	n	0.00	0	33	0	33	n	0.00	0	52	0	52	n	0.01	1	72	1	72	n	0.00	0	69	0	69	n	0.02	2	94	2	94	y	ENSMUSG00000041241.13	Mul1	chr4	protein_coding	mitochondrial ubiquitin ligase activator of NFKB 1
known_NIR_13247	chr4	138700300	138710932	+	138700300;138704633	138704519;138710932	ES	ENSMUST00000123636.8	known	0.00	0	14.5	0	11;18	n	0.00	0	13.5	0	10;17	n	0.04	1	26.5	1	15;38	n	0.00	0	21.0	0	9;33	n	0.00	0	23.0	0	12;34	n	0.15	2	11.0	2	7;15	y	0.00	0	16.0	0	8;24	n	0.00	0	10.0	0	1;19	n	0.00	0	19.0	0	10;28	n	0.04	1	27.0	1	15;39	n	0.00	0	16.0	0	5;27	n	0.00	0	28.0	0	19;37	n	ENSMUSG00000041143.17	Tmco4	chr4	protein_coding	transmembrane and coiled-coil domains 4
known_NIR_13248	chr4	138700300	138710932	+	138704633	138710932	A5SS&ES	ENSMUST00000050949.9	known	0.00	0	18	0	18	n	0.00	0	17	0	17	n	0.03	1	38	1	38	n	0.00	0	33	0	33	n	0.00	0	34	0	34	n	0.12	2	15	2	15	y	0.00	0	24	0	24	n	0.00	0	19	0	19	n	0.00	0	28	0	28	n	0.03	1	39	1	39	n	0.00	0	27	0	27	n	0.00	0	37	0	37	n	ENSMUSG00000041143.17	Tmco4	chr4	protein_coding	transmembrane and coiled-coil domains 4
known_NIR_13249	chr4	138700598	138704519	+	138700300	138704519	A5SS	ENSMUST00000123636.8	known	0.39	7	11	7	11	y	0.63	17	10	17	10	y	0.58	21	15	21	15	y	0.72	23	9	23	9	y	0.60	18	12	18	12	y	0.59	10	7	10	7	y	0.73	22	8	22	8	y	0.92	11	1	11	1	n	0.72	26	10	26	10	y	0.69	33	15	33	15	y	0.71	12	5	12	5	y	0.60	29	19	29	19	y	ENSMUSG00000041143.17	Tmco4	chr4	protein_coding	transmembrane and coiled-coil domains 4
known_NIR_13250	chr4	138757224	138763689	+	138757224	138779812	A3SS	ENSMUST00000043042.10	known	0.21	5	19	5	19	y	0.05	1	21	1	21	n	0.12	4	30	4	30	y	0.03	1	35	1	35	n	0.06	2	30	2	30	y	0.09	1	10	1	10	n	0.08	4	47	4	47	y	0.22	4	14	4	14	y	0.21	4	15	4	15	y	0.06	4	59	4	59	y	0.06	2	29	2	29	y	0.13	7	46	7	46	y	ENSMUSG00000041143.17	Tmco4	chr4	protein_coding	transmembrane and coiled-coil domains 4
known_NIR_13251	chr4	138833214	138858099	-	138833214	138858233	A5SS	ENSMUST00000143971.2	known	0.04	15	360	15	360	y	0.03	10	358	10	358	y	0.01	5	423	5	423	y	0.03	10	340	10	340	y	0.04	19	475	19	475	y	0.05	9	189	9	189	y	0.04	21	549	21	549	y	0.02	5	222	5	222	y	0.02	8	346	8	346	y	0.02	9	488	9	488	y	0.04	16	428	16	428	y	0.03	11	368	11	368	y	ENSMUSG00000050608.12	Micos10	chr4	protein_coding	mitochondrial contact site and cristae organizing system subunit 10
known_NIR_13252	chr4	139015143;139016284	139016172;139018314	+	139015143	139018314	cassetteExon	ENSMUST00000102508.10	known	0.00	1.5	361	2;1	361	n	0.00	0.0	441	0;0	441	n	0.01	3.0	499	2;4	499	y	0.00	0.0	371	0;0	371	n	0.00	1.5	505	1;2	505	n	0.00	0.5	258	0;1	258	n	0.06	28.5	474	23;34	474	y	0.00	0.5	238	1;0	238	n	0.00	1.0	326	2;0	326	n	0.00	0.0	488	0;0	488	n	0.00	0.0	369	0;0	369	n	0.00	2.0	426	2;2	426	y	ENSMUSG00000028745.19	Capzb	chr4	protein_coding	capping protein (actin filament) muscle Z-line, beta
known_NIR_13253	chr4	139029865	139033750	-	139029865	139033754	A5SS	ENSMUST00000139840.9	known	0.03	1	39	1	39	n	0.00	0	33	0	33	n	0.00	0	64	0	64	n	0.00	0	76	0	76	n	0.00	0	69	0	69	n	0.00	0	37	0	37	n	0.00	0	60	0	60	n	0.05	2	40	2	40	y	0.00	0	46	0	46	n	0.00	0	64	0	64	n	0.00	0	54	0	54	n	0.00	0	46	0	46	n	ENSMUSG00000028744.16	Slc66a1	chr4	protein_coding	solute carrier family 66 member 1
known_NIR_13254	chr4	139075113	139075232	-	139075116	139075232	A3SS	ENSMUST00000131052.8	known	0.00	0	119	0	119	n	0.04	6	147	6	147	y	0.02	2	113	2	113	y	0.00	0	119	0	119	n	0.02	3	120	3	120	y	0.08	5	58	5	58	y	0.00	0	137	0	137	n	0.00	0	66	0	66	n	0.00	0	82	0	82	n	0.00	0	128	0	128	n	0.00	0	145	0	145	n	0.03	3	93	3	93	y	ENSMUSG00000028741.14	Mrto4	chr4	protein_coding	mRNA turnover 4, ribosome maturation factor
known_NIR_13255	chr4	139091090	139092506	+	139091090	139091642	A3SS&ES	ENSMUST00000155700.2	known	1.00	15	0	15	0	n	1.00	12	0	12	0	n	1.00	11	0	11	0	n	0.96	26	1	26	1	n	0.90	28	3	28	3	y	1.00	15	0	15	0	n	0.86	19	3	19	3	y	0.95	18	1	18	1	n	1.00	15	0	15	0	n	1.00	22	0	22	0	n	1.00	17	0	17	0	n	1.00	22	0	22	0	n	ENSMUSG00000078517.13	Emc1	chr4	protein_coding	ER membrane protein complex subunit 1
known_NIR_13256	chr4	139091090	139092506	+	139091090;139091650	139091642;139092506	ES	ENSMUST00000179784.9	known	1.00	15	0.0	15	0;0	n	1.00	12	0.0	12	0;0	n	1.00	11	0.0	11	0;0	n	0.93	26	2.0	26	1;3	n	0.92	28	2.5	28	3;2	y	1.00	15	0.0	15	0;0	n	0.93	19	1.5	19	3;0	n	0.97	18	0.5	18	1;0	n	1.00	15	0.0	15	0;0	n	1.00	22	0.0	22	0;0	n	1.00	17	0.0	17	0;0	n	1.00	22	0.0	22	0;0	n	ENSMUSG00000078517.13	Emc1	chr4	protein_coding	ER membrane protein complex subunit 1
known_NIR_13257	chr4	139159072	139160931	+	139159072;139159825	139159793;139160931	ES	ENSMUST00000165860.8	known	1.00	28	0.0	28	0;0	n	1.00	18	0.0	18	0;0	n	1.00	41	0.0	41	0;0	n	1.00	33	0.0	33	0;0	n	1.00	36	0.0	36	0;0	n	1.00	20	0.0	20	0;0	n	0.74	32	11.5	32	12;11	y	1.00	35	0.0	35	0;0	n	1.00	31	0.0	31	0;0	n	1.00	47	0.0	47	0;0	n	1.00	18	0.0	18	0;0	n	1.00	34	0.0	34	0;0	n	ENSMUSG00000066036.15	Ubr4	chr4	protein_coding	ubiquitin protein ligase E3 component n-recognin 4
known_NIR_13258	chr4	139162495;139163343	139163260;139163433	+	139162495	139163433	cassetteExon	ENSMUST00000165860.8	known	0.00	0.0	27	0;0	27	n	0.00	0.0	11	0;0	11	n	0.03	1.5	48	1;2	48	n	0.15	5.0	29	5;5	29	y	0.01	0.5	42	0;1	42	n	0.00	0.0	19	0;0	19	n	0.10	3.0	28	4;2	28	y	0.07	1.5	20	2;1	20	n	0.06	1.5	25	2;1	25	n	0.04	2.0	44	2;2	44	y	0.05	1.0	21	2;0	21	n	0.03	1.5	45	1;2	45	n	ENSMUSG00000066036.15	Ubr4	chr4	protein_coding	ubiquitin protein ligase E3 component n-recognin 4
known_NIR_13259	chr4	139168133;139168607	139168503;139169997	+	139168133	139169997	cassetteExon	ENSMUST00000165860.8	known	0.84	26.5	5	29;24	5	y	0.87	13.0	2	10;16	2	y	0.76	32.0	10	29;35	10	y	0.88	29.0	4	34;24	4	y	0.83	39.5	8	48;31	8	y	0.83	20.0	4	14;26	4	y	0.78	32.0	9	33;31	9	y	0.82	18.5	4	23;14	4	y	0.80	20.5	5	20;21	5	y	0.85	34.0	6	28;40	6	y	0.84	21.5	4	18;25	4	y	0.91	39.5	4	43;36	4	y	ENSMUSG00000066036.15	Ubr4	chr4	protein_coding	ubiquitin protein ligase E3 component n-recognin 4
known_NIR_13260	chr4	139206371	139206725	+	139206371	139206761	A3SS	ENSMUST00000165860.8	known	0.04	8	180	8	180	y	0.05	7	130	7	130	y	0.10	19	172	19	172	y	0.05	9	159	9	159	y	0.02	4	217	4	217	y	0.02	2	101	2	101	y	0.07	14	186	14	186	y	0.07	7	95	7	95	y	0.06	8	130	8	130	y	0.07	15	196	15	196	y	0.06	12	176	12	176	y	0.10	22	197	22	197	y	ENSMUSG00000066036.15	Ubr4	chr4	protein_coding	ubiquitin protein ligase E3 component n-recognin 4
known_NIR_13261	chr4	140274397;140279231	140279107;140279839	-	140274397	140279839	cassetteExon	ENSMUST00000138493.8	known	0.08	2.0	22	2;2	22	y	0.05	1.5	29	2;1	29	n	0.06	3.0	50	3;3	50	y	0.03	1.0	32	1;1	32	n	0.03	1.5	55	2;1	55	n	0.00	0.0	25	0;0	25	n	0.07	3.5	47	6;1	47	n	0.03	1.0	32	0;2	32	n	0.11	4.5	36	5;4	36	y	0.04	2.0	49	3;1	49	n	0.07	3.0	41	3;3	41	y	0.09	5.0	49	5;5	49	y	ENSMUSG00000040964.17	Arhgef10l	chr4	protein_coding	Rho guanine nucleotide exchange factor (GEF) 10-like
known_NIR_13262	chr4	140295831;140296081	140296067;140297568	-	140295831	140297568	cassetteExon	ENSMUST00000138493.8	known	0.47	11.5	13	11;12	13	y	0.29	6.5	16	6;7	16	y	0.25	16.5	50	16;17	50	y	0.56	23.0	18	23;23	18	y	0.49	33.0	35	31;35	35	y	0.08	3.0	33	3;3	33	y	0.35	17.0	32	16;18	32	y	0.53	21.5	19	21;22	19	y	0.70	14.0	6	12;16	6	y	0.38	18.0	29	17;19	29	y	0.60	19.5	13	19;20	13	y	0.60	38.5	26	37;40	26	y	ENSMUSG00000040964.17	Arhgef10l	chr4	protein_coding	Rho guanine nucleotide exchange factor (GEF) 10-like
known_NIR_13263	chr4	140308242	140311135	-	140308242	140308917	5pMXE	ENSMUST00000105797.9	known	1.00	19	0	19	0	n	1.00	26	0	26	0	n	1.00	50	0	50	0	n	1.00	30	0	30	0	n	1.00	71	0	71	0	n	1.00	25	0	25	0	n	0.92	36	3	36	3	y	1.00	30	0	30	0	n	1.00	36	0	36	0	n	1.00	46	0	46	0	n	1.00	30	0	30	0	n	1.00	43	0	43	0	n	ENSMUSG00000040964.17	Arhgef10l	chr4	protein_coding	Rho guanine nucleotide exchange factor (GEF) 10-like
known_NIR_13264	chr4	140311243	140319129	-	140311243;140314211	140314095;140319129	ES	ENSMUST00000105799.8	known	1.00	12	0.0	12	0;0	n	0.91	10	1.0	10	2;0	n	0.96	45	2.0	45	2;2	y	1.00	28	0.0	28	0;0	n	0.99	53	0.5	53	0;1	n	1.00	31	0.0	31	0;0	n	0.97	29	1.0	29	1;1	n	0.99	34	0.5	34	1;0	n	0.97	34	1.0	34	1;1	n	0.98	42	1.0	42	0;2	n	1.00	19	0.0	19	0;0	n	0.99	43	0.5	43	1;0	n	ENSMUSG00000040964.17	Arhgef10l	chr4	protein_coding	Rho guanine nucleotide exchange factor (GEF) 10-like
known_NIR_13265	chr4	140724110	140726546	+	140724110	140726439	A3SS	ENSMUST00000168047.8	known	0.00	0	22	0	22	n	0.00	0	18	0	18	n	0.00	0	23	0	23	n	0.00	0	29	0	29	n	0.00	0	56	0	56	n	0.00	0	20	0	20	n	0.00	0	25	0	25	n	0.00	0	18	0	18	n	0.12	2	15	2	15	y	0.00	0	49	0	49	n	0.00	0	29	0	29	n	0.00	0	43	0	43	n	ENSMUSG00000036622.16	Atp13a2	chr4	protein_coding	ATPase type 13A2
known_NIR_13266	chr4	140728184	140729199	+	140728184	140729195	A3SS	ENSMUST00000168047.8	known	0.00	0	26	0	26	n	0.00	0	23	0	23	n	0.00	0	33	0	33	n	0.00	0	30	0	30	n	0.00	0	50	0	50	n	0.00	0	13	0	13	n	0.00	0	35	0	35	n	0.00	0	8	0	8	n	0.08	2	23	2	23	y	0.00	0	37	0	37	n	0.00	0	22	0	22	n	0.00	0	27	0	27	n	ENSMUSG00000036622.16	Atp13a2	chr4	protein_coding	ATPase type 13A2
known_NIR_13267	chr4	140733814	140734064	+	140733814	140733990	A3SS	ENSMUST00000037055.14	known	0.34	14	27	14	27	y	0.41	15	22	15	22	y	0.34	12	23	12	23	y	0.46	13	15	13	15	y	0.39	26	41	26	41	y	0.62	15	9	15	9	y	0.47	31	35	31	35	y	0.48	14	15	14	15	y	0.33	10	20	10	20	y	0.43	20	27	20	27	y	0.53	27	24	27	24	y	0.44	16	20	16	20	y	ENSMUSG00000036622.16	Atp13a2	chr4	protein_coding	ATPase type 13A2
known_NIR_13268	chr4	140797544	140799840	-	140797544	140798892	5pMXE	ENSMUST00000122933.2	known	0.94	17	1	17	1	n	0.73	11	4	11	4	y	0.85	28	5	28	5	y	0.69	9	4	9	4	y	0.75	27	9	27	9	y	0.88	14	2	14	2	y	0.85	22	4	22	4	y	1.00	11	0	11	0	n	0.86	12	2	12	2	y	0.62	8	5	8	5	y	0.95	19	1	19	1	n	0.80	12	3	12	3	y	ENSMUSG00000028923.15	Necap2	chr4	protein_coding	NECAP endocytosis associated 2
known_NIR_13269	chr4	140797544;140799006	140798892;140799840	-	140797544	140799840	cassetteExon	ENSMUST00000132906.8	known	0.03	0.5	17	1;0	17	n	0.21	3.0	11	4;2	11	y	0.10	3.0	28	5;1	28	n	0.22	2.5	9	4;1	9	n	0.14	4.5	27	9;0	27	n	0.07	1.0	14	2;0	14	n	0.12	3.0	22	4;2	22	y	0.00	0.0	11	0;0	11	n	0.08	1.0	12	2;0	12	n	0.48	7.5	8	5;10	8	y	0.03	0.5	19	1;0	19	n	0.14	2.0	12	3;1	12	n	ENSMUSG00000028923.15	Necap2	chr4	protein_coding	NECAP endocytosis associated 2
known_NIR_13270	chr4	140797544;140799028	140798892;140799840	-	140797544	140799840	cassetteExon	ENSMUST00000132906.8	known	0.03	0.5	17	1;0	17	n	0.15	2.0	11	4;0	11	n	0.10	3.0	28	5;1	28	n	0.18	2.0	9	4;0	9	n	0.21	7.0	27	9;5	27	y	0.07	1.0	14	2;0	14	n	0.12	3.0	22	4;2	22	y	0.00	0.0	11	0;0	11	n	0.08	1.0	12	2;0	12	n	0.24	2.5	8	5;0	8	n	0.03	0.5	19	1;0	19	n	0.17	2.5	12	3;2	12	y	ENSMUSG00000028923.15	Necap2	chr4	protein_coding	NECAP endocytosis associated 2
known_NIR_13271	chr4	140843951	140845838	-	140843175	140845838	A3SS	ENSMUST00000148204.8	known	0.05	7	148	7	148	y	0.03	4	139	4	139	y	0.02	3	142	3	142	y	0.03	5	147	5	147	y	0.01	3	205	3	205	y	0.01	1	80	1	80	n	0.02	4	182	4	182	y	0.00	0	92	0	92	n	0.04	5	114	5	114	y	0.06	14	238	14	238	y	0.01	2	181	2	181	y	0.04	7	176	7	176	y	ENSMUSG00000040842.18	Szrd1	chr4	protein_coding	SUZ RNA binding domain containing 1
known_NIR_13272	chr4	140846089	140867003	-	140846089;140847684	140847635;140867003	ES	ENSMUST00000148204.8	known	0.19	6	26.0	6	15;37	y	0.18	6	28.0	6	20;36	y	0.40	14	21.0	14	11;31	y	0.15	7	39.0	7	14;64	y	0.24	17	53.0	17	33;73	y	0.14	3	18.5	3	6;31	y	0.27	14	38.5	14	10;67	y	0.38	13	21.0	13	5;37	y	0.17	5	24.5	5	12;37	y	0.28	16	41.0	16	18;64	y	0.12	6	42.0	6	14;70	y	0.16	7	36.0	7	30;42	y	ENSMUSG00000040842.18	Szrd1	chr4	protein_coding	SUZ RNA binding domain containing 1
known_NIR_13273	chr4	140846089	140867003	-	140846092	140867003	A3SS	ENSMUST00000094549.11	known	0.16	6	32	6	32	y	0.14	6	38	6	38	y	0.20	14	56	14	56	y	0.14	7	42	7	42	y	0.22	17	61	17	61	y	0.10	3	27	3	27	y	0.27	14	38	14	38	y	0.27	13	36	13	36	y	0.17	5	24	5	24	y	0.22	16	58	16	58	y	0.12	6	44	6	44	y	0.12	7	49	7	49	y	ENSMUSG00000040842.18	Szrd1	chr4	protein_coding	SUZ RNA binding domain containing 1
known_NIR_13274	chr4	140846089	140867003	-	140847684	140867003	A3SS&ES	ENSMUST00000102487.4	known	0.14	6	37	6	37	y	0.14	6	36	6	36	y	0.31	14	31	14	31	y	0.10	7	64	7	64	y	0.19	17	73	17	73	y	0.09	3	31	3	31	y	0.17	14	67	14	67	y	0.26	13	37	13	37	y	0.12	5	37	5	37	y	0.20	16	64	16	64	y	0.08	6	70	6	70	y	0.14	7	42	7	42	y	ENSMUSG00000040842.18	Szrd1	chr4	protein_coding	SUZ RNA binding domain containing 1
known_NIR_13275	chr4	140846092	140847635	-	140846089	140847635	A3SS	ENSMUST00000148204.8	known	0.78	54	15	54	15	y	0.75	59	20	59	20	y	0.80	44	11	44	11	y	0.88	101	14	101	14	y	0.77	108	33	108	33	y	0.88	42	6	42	6	y	0.89	84	10	84	10	y	0.87	33	5	33	5	y	0.84	62	12	62	12	y	0.85	104	18	104	18	y	0.87	95	14	95	14	y	0.76	95	30	95	30	y	ENSMUSG00000040842.18	Szrd1	chr4	protein_coding	SUZ RNA binding domain containing 1
known_NIR_13276	chr4	140846092	140867003	-	140846092;140847684	140847635;140867003	ES	ENSMUST00000102487.4	known	0.41	32	45.5	32	54;37	y	0.44	38	47.5	38	59;36	y	0.60	56	37.5	56	44;31	y	0.34	42	82.5	42	101;64	y	0.40	61	90.5	61	108;73	y	0.43	27	36.5	27	42;31	y	0.33	38	75.5	38	84;67	y	0.51	36	35.0	36	33;37	y	0.33	24	49.5	24	62;37	y	0.41	58	84.0	58	104;64	y	0.35	44	82.5	44	95;70	y	0.42	49	68.5	49	95;42	y	ENSMUSG00000040842.18	Szrd1	chr4	protein_coding	SUZ RNA binding domain containing 1
known_NIR_13277	chr4	140846092	140867003	-	140847684	140867003	A3SS&ES	ENSMUST00000148204.8	known	0.46	32	37	32	37	y	0.51	38	36	38	36	y	0.64	56	31	56	31	y	0.40	42	64	42	64	y	0.46	61	73	61	73	y	0.47	27	31	27	31	y	0.36	38	67	38	67	y	0.49	36	37	36	37	y	0.39	24	37	24	37	y	0.48	58	64	58	64	y	0.39	44	70	44	70	y	0.54	49	42	49	42	y	ENSMUSG00000040842.18	Szrd1	chr4	protein_coding	SUZ RNA binding domain containing 1
known_NIR_13278	chr4	140968055	140973486	+	140968055;140972277	140972129;140973486	ES	ENSMUST00000141834.9	known	0.38	28	46.5	28	64;29	y	0.39	19	30.0	19	39;21	y	0.51	14	13.5	14	12;15	y	0.29	19	46.0	19	63;29	y	0.40	39	57.5	39	71;44	y	0.29	6	14.5	6	19;10	y	0.44	27	35.0	27	46;24	y	0.37	9	15.5	9	25;6	y	0.27	14	38.0	14	43;33	y	0.42	36	50.5	36	63;38	y	0.27	11	30.0	11	48;12	y	0.46	31	36.5	31	46;27	y	ENSMUSG00000028919.12	Arhgef19	chr4	protein_coding	Rho guanine nucleotide exchange factor (GEF) 19
known_NIR_13279	chr4	140970321	140972129	+	140968055	140972129	A5SS	ENSMUST00000141834.9	known	0.00	0	64	0	64	n	0.00	0	39	0	39	n	0.00	0	12	0	12	n	0.02	1	63	1	63	n	0.04	3	71	3	71	y	0.05	1	19	1	19	n	0.04	2	46	2	46	y	0.04	1	25	1	25	n	0.04	2	43	2	43	y	0.00	0	63	0	63	n	0.00	0	48	0	48	n	0.00	0	46	0	46	n	ENSMUSG00000028919.12	Arhgef19	chr4	protein_coding	Rho guanine nucleotide exchange factor (GEF) 19
known_NIR_13280	chr4	140972277;140973363	140973257;140973486	+	140972277	140973486	cassetteExon	ENSMUST00000141834.9	known	0.46	25.0	29	24;26	29	y	0.33	10.5	21	7;14	21	y	0.27	5.5	15	5;6	15	y	0.50	28.5	29	24;33	29	y	0.35	24.0	44	18;30	44	y	0.26	3.5	10	2;5	10	y	0.39	15.5	24	17;14	24	y	0.72	15.5	6	13;18	6	y	0.38	20.0	33	15;25	33	y	0.45	30.5	38	26;35	38	y	0.62	20.0	12	19;21	12	y	0.45	22.0	27	24;20	27	y	ENSMUSG00000028919.12	Arhgef19	chr4	protein_coding	Rho guanine nucleotide exchange factor (GEF) 19
known_NIR_13281	chr4	140973363	140973486	+	140968055	140973486	A5SS	ENSMUST00000140536.3	known	0.48	26	28	26	28	y	0.42	14	19	14	19	y	0.30	6	14	6	14	y	0.63	33	19	33	19	y	0.43	30	39	30	39	y	0.45	5	6	5	6	y	0.34	14	27	14	27	y	0.67	18	9	18	9	y	0.64	25	14	25	14	y	0.49	35	36	35	36	y	0.66	21	11	21	11	y	0.39	20	31	20	31	y	ENSMUSG00000028919.12	Arhgef19	chr4	protein_coding	Rho guanine nucleotide exchange factor (GEF) 19
known_NIR_13282	chr4	141191782	141191871	+	141191789	141191871	A5SS	ENSMUST00000006377.13	known	0.00	0	31	0	31	n	0.12	2	15	2	15	y	0.05	1	18	1	18	n	0.00	0	13	0	13	n	0.00	0	16	0	16	n	0.08	1	11	1	11	n	0.00	0	20	0	20	n	0.00	0	12	0	12	n	0.10	2	19	2	19	y	0.03	1	28	1	28	n	0.05	1	20	1	20	n	0.00	0	12	0	12	n	ENSMUSG00000006215.13	Zbtb17	chr4	protein_coding	zinc finger and BTB domain containing 17
known_NIR_13283	chr4	141193418	141193710	+	141193418	141193659	A3SS	ENSMUST00000006377.13	known	0.00	0	31	0	31	n	0.00	0	22	0	22	n	0.00	0	28	0	28	n	0.00	0	30	0	30	n	0.06	2	29	2	29	y	0.00	0	17	0	17	n	0.00	0	31	0	31	n	0.00	0	21	0	21	n	0.00	0	19	0	19	n	0.00	0	39	0	39	n	0.07	2	25	2	25	y	0.00	0	32	0	32	n	ENSMUSG00000006215.13	Zbtb17	chr4	protein_coding	zinc finger and BTB domain containing 17
known_NIR_13284	chr4	141206700;141208125	141208057;141211036	-	141206700	141211036	cassetteExon	ENSMUST00000078886.10	known	0.14	0.5	3	1;0	3	n	0.00	0.0	5	0;0	5	n	0.12	1.0	7	1;1	7	n	0.20	2.0	8	1;3	8	n	0.28	3.5	9	4;3	9	y	0.33	2.5	5	4;1	5	n	0.04	0.5	12	0;1	12	n	0.30	3.0	7	3;3	7	y	0.09	0.5	5	0;1	5	n	0.12	1.0	7	2;0	7	n	0.26	2.5	7	3;2	7	y	0.18	2.0	9	3;1	9	n	ENSMUSG00000040761.17	Spen	chr4	protein_coding	spen family transcription repressor
known_NIR_13285	chr4	141342446	141343515	-	141342421	141343515	A3SS	ENSMUST00000143154.8	known	0.85	50	9	50	9	y	0.79	53	14	53	14	y	0.80	70	18	70	18	y	0.85	57	10	57	10	y	0.81	70	16	70	16	y	0.82	56	12	56	12	y	0.78	79	22	79	22	y	0.78	36	10	36	10	y	0.62	26	16	26	16	y	0.80	51	13	51	13	y	0.81	44	10	44	10	y	0.87	47	7	47	7	y	ENSMUSG00000043085.15	Tmem82	chr4	protein_coding	transmembrane protein 82
known_NIR_13286	chr4	141361789	141366987	-	141361789;141364795	141364736;141366987	ES	ENSMUST00000084203.11	known	0.24	4	12.5	4	14;11	y	0.21	2	7.5	2	9;6	y	0.34	12	23.0	12	27;19	y	0.48	5	5.5	5	5;6	y	0.25	4	12.0	4	12;12	y	0.60	6	4.0	6	5;3	y	0.04	1	22.5	1	25;20	n	0.48	5	5.5	5	6;5	y	0.35	4	7.5	4	8;7	y	0.65	13	7.0	13	5;9	y	0.32	5	10.5	5	10;11	y	0.23	4	13.5	4	20;7	y	ENSMUSG00000028917.15	Plekhm2	chr4	protein_coding	pleckstrin homology domain containing, family M (with RUN domain) member 2
known_NIR_13287	chr4	141521297	141523749	+	141521297	141523746	A3SS	ENSMUST00000128660.2	known	0.31	4	9	4	9	y	0.12	1	7	1	7	n	0.17	1	5	1	5	n	0.00	0	14	0	14	n	0.14	2	12	2	12	y	0.25	2	6	2	6	n	0.06	1	17	1	17	n	0.08	1	12	1	12	n	0.08	1	12	1	12	n	0.09	3	29	3	29	y	0.46	6	7	6	7	y	0.13	2	13	2	13	y	ENSMUSG00000028914.14	Casp9	chr4	protein_coding	caspase 9
known_NIR_13288	chr4	142896758	142905885	-	142896758	142905858	A5SS	ENSMUST00000105778.8	known	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.11	1	8	1	8	n	0.18	3	14	3	14	y	0.00	0	15	0	15	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	ENSMUSG00000057637.14	Prdm2	chr4	protein_coding	PR domain containing 2, with ZNF domain
known_NIR_13289	chr4	142995869	143000470	-	142995869;142997131	142997093;143000470	ES	ENSMUST00000030317.14	known	-	-	-	-	-	-	0.00	0	2.0	0	3;1	n	0.00	0	1.0	0	1;1	n	0.00	0	2.0	0	2;2	n	0.00	0	0.5	0	0;1	n	0.00	0	2.5	0	3;2	n	0.21	2	7.5	2	9;6	y	0.00	0	1.0	0	1;1	n	0.00	0	5.5	0	5;6	n	0.00	0	0.5	0	1;0	n	0.00	0	2.0	0	2;2	n	0.00	0	3.5	0	3;4	n	ENSMUSG00000028583.15	Pdpn	chr4	protein_coding	podoplanin
known_NIR_13290	chr4	143139661	143143210	+	143139661;143141983	143141919;143143210	ES	ENSMUST00000059790.11	known	0.33	1	2.0	1	1;3	n	0.80	4	1.0	4	1;1	n	0.36	2	3.5	2	5;2	n	0.20	1	4.0	1	4;4	n	0.62	5	3.0	5	2;4	y	0.67	3	1.5	3	1;2	n	0.80	6	1.5	6	1;2	n	0.75	3	1.0	3	1;1	n	0.67	3	1.5	3	1;2	n	0.86	6	1.0	6	1;1	n	0.44	2	2.5	2	2;3	n	0.62	5	3.0	5	3;3	y	ENSMUSG00000046862.15	Pramel12	chr4	protein_coding	PRAME like 12
known_NIR_13291	chr4	144619945	144620155	+	144619480	144620155	A5SS	ENSMUST00000105744.8	known	1.00	20	0	20	0	n	1.00	13	0	13	0	n	1.00	3	0	3	0	n	1.00	19	0	19	0	n	0.95	20	1	20	1	n	1.00	3	0	3	0	n	1.00	23	0	23	0	n	1.00	5	0	5	0	n	1.00	18	0	18	0	n	1.00	17	0	17	0	n	0.92	22	2	22	2	y	1.00	25	0	25	0	n	ENSMUSG00000066026.15	Dhrs3	chr4	protein_coding	dehydrogenase/reductase (SDR family) member 3
known_NIR_13292	chr4	144619945	144645221	+	144620279	144645221	A5SS&ES	ENSMUST00000105744.8	known	0.03	10	286	10	286	y	0.05	13	247	13	247	y	0.06	6	87	6	87	y	0.05	18	350	18	350	y	0.03	14	414	14	414	y	0.07	6	77	6	77	y	0.05	21	409	21	409	y	0.04	5	129	5	129	y	0.06	18	285	18	285	y	0.05	22	408	22	408	y	0.02	9	394	9	394	y	0.04	14	375	14	375	y	ENSMUSG00000066026.15	Dhrs3	chr4	protein_coding	dehydrogenase/reductase (SDR family) member 3
known_NIR_13293	chr4	144619945;144620279	144620155;144645221	+	144619945	144645221	cassetteExon	ENSMUST00000128926.8	known	0.94	153.0	10	20;286	10	y	0.91	130.0	13	13;247	13	y	0.88	45.0	6	3;87	6	y	0.91	184.5	18	19;350	18	y	0.94	217.0	14	20;414	14	y	0.87	40.0	6	3;77	6	y	0.91	216.0	21	23;409	21	y	0.93	67.0	5	5;129	5	y	0.89	151.5	18	18;285	18	y	0.91	212.5	22	17;408	22	y	0.96	208.0	9	22;394	9	y	0.93	200.0	14	25;375	14	y	ENSMUSG00000066026.15	Dhrs3	chr4	protein_coding	dehydrogenase/reductase (SDR family) member 3
known_NIR_13294	chr4	144645364	144645800	+	144645364	144645955	A3SS	ENSMUST00000171001.8	known	0.04	14	330	14	330	y	0.04	14	298	14	298	y	0.17	18	91	18	91	y	0.03	12	357	12	357	y	0.05	22	440	22	440	y	0.06	7	111	7	111	y	0.04	18	444	18	444	y	0.06	8	133	8	133	y	0.05	17	309	17	309	y	0.03	15	494	15	494	y	0.05	18	365	18	365	y	0.05	20	390	20	390	y	ENSMUSG00000066026.15	Dhrs3	chr4	protein_coding	dehydrogenase/reductase (SDR family) member 3
known_NIR_13295	chr4	144645364	144646411	+	144646074	144646411	5pMXE	ENSMUST00000133265.2	known	0.00	2	408	2	408	y	0.01	4	323	4	323	y	0.00	0	122	0	122	n	0.00	2	414	2	414	y	0.00	2	464	2	464	y	0.00	0	119	0	119	n	0.00	0	473	0	473	n	0.00	0	186	0	186	n	0.01	2	338	2	338	y	0.02	8	496	8	496	y	0.00	0	492	0	492	n	0.02	9	441	9	441	y	ENSMUSG00000066026.15	Dhrs3	chr4	protein_coding	dehydrogenase/reductase (SDR family) member 3
known_NIR_13296	chr4	144645364;144646074	144645800;144646411	+	144645364	144646411	cassetteExon	ENSMUST00000105744.8	known	0.99	211.0	2	14;408	2	y	0.98	168.5	4	14;323	4	y	1.00	70.0	0	18;122	0	n	0.99	213.0	2	12;414	2	y	0.99	243.0	2	22;464	2	y	1.00	63.0	0	7;119	0	n	1.00	245.5	0	18;473	0	n	1.00	97.0	0	8;186	0	n	0.99	177.5	2	17;338	2	y	0.97	255.5	8	15;496	8	y	1.00	255.0	0	18;492	0	n	0.96	230.5	9	20;441	9	y	ENSMUSG00000066026.15	Dhrs3	chr4	protein_coding	dehydrogenase/reductase (SDR family) member 3
known_NIR_13297	chr4	144645364;144646074	144645955;144646411	+	144645364	144646411	cassetteExon	ENSMUST00000105744.8	known	0.99	369.0	2	330;408	2	y	0.99	310.5	4	298;323	4	y	1.00	106.5	0	91;122	0	n	0.99	385.5	2	357;414	2	y	1.00	452.0	2	440;464	2	y	1.00	115.0	0	111;119	0	n	1.00	458.5	0	444;473	0	n	1.00	159.5	0	133;186	0	n	0.99	323.5	2	309;338	2	y	0.98	495.0	8	494;496	8	y	1.00	428.5	0	365;492	0	n	0.98	415.5	9	390;441	9	y	ENSMUSG00000066026.15	Dhrs3	chr4	protein_coding	dehydrogenase/reductase (SDR family) member 3
known_NIR_13298	chr4	144710019	144746707	-	144710019;144743500	144743305;144746707	ES	ENSMUST00000036579.14	known	0.00	0	97.0	0	91;103	n	0.01	1	98.5	1	96;101	n	0.03	3	109.5	3	124;95	y	0.01	1	111.0	1	85;137	n	0.00	0	129.5	0	122;137	n	0.00	0	52.5	0	44;61	n	0.00	0	150.0	0	117;183	n	0.00	0	51.0	0	42;60	n	0.00	0	88.0	0	78;98	n	0.01	1	136.0	1	121;151	n	0.00	0	85.0	0	75;95	n	0.02	2	101.5	2	93;110	y	ENSMUSG00000020220.17	Vps13d	chr4	protein_coding	vacuolar protein sorting 13D
known_NIR_13299	chr4	144710019	144746707	-	144743500	144746707	3pMXE	ENSMUST00000144835.2	known	0.00	0	103	0	103	n	0.01	1	101	1	101	n	0.03	3	95	3	95	y	0.01	1	137	1	137	n	0.00	0	137	0	137	n	0.00	0	61	0	61	n	0.00	0	183	0	183	n	0.00	0	60	0	60	n	0.00	0	98	0	98	n	0.01	1	151	1	151	n	0.00	0	95	0	95	n	0.02	2	110	2	110	y	ENSMUSG00000020220.17	Vps13d	chr4	protein_coding	vacuolar protein sorting 13D
known_NIR_13300	chr4	144826640	144832369	-	144830258	144832369	A3SS&ES	ENSMUST00000185113.2	known	0.93	13	1	13	1	n	1.00	13	0	13	0	n	0.81	17	4	17	4	y	0.89	24	3	24	3	y	1.00	22	0	22	0	n	0.88	15	2	15	2	y	0.97	29	1	29	1	n	0.75	9	3	9	3	y	1.00	11	0	11	0	n	0.92	23	2	23	2	y	0.89	8	1	8	1	n	1.00	22	0	22	0	n	ENSMUSG00000020220.17	Vps13d	chr4	protein_coding	vacuolar protein sorting 13D
known_NIR_13301	chr4	144954166	144955645	-	144954166	144955574	A5SS	ENSMUST00000030336.11	known	0.00	0	25	0	25	n	0.00	0	30	0	30	n	0.01	1	97	1	97	n	0.00	0	45	0	45	n	0.00	0	53	0	53	n	0.05	2	40	2	40	y	0.02	1	52	1	52	n	0.00	0	31	0	31	n	0.00	0	18	0	18	n	0.00	0	45	0	45	n	0.05	1	21	1	21	n	0.00	0	26	0	26	n	ENSMUSG00000028599.11	Tnfrsf1b	chr4	protein_coding	tumor necrosis factor receptor superfamily, member 1b
known_NIR_13302	chr4	147945470	147945811	-	147945542	147945811	A3SS	ENSMUST00000030886.15	known	0.14	8	49	8	49	y	0.13	9	60	9	60	y	0.18	8	36	8	36	y	0.18	6	27	6	27	y	0.11	9	73	9	73	y	0.18	6	27	6	27	y	0.15	12	66	12	66	y	0.13	5	33	5	33	y	0.06	4	58	4	58	y	0.11	8	66	8	66	y	0.13	10	66	10	66	y	0.09	7	67	7	67	y	ENSMUSG00000029022.19	Miip	chr4	protein_coding	migration and invasion inhibitory protein
known_NIR_13303	chr4	147947406	147949646	-	147947406;147947593	147947485;147949646	ES	ENSMUST00000030886.15	known	0.26	12	34.0	12	33;35	y	0.21	8	29.5	8	24;35	y	0.17	7	34.0	7	37;31	y	0.39	18	28.0	18	30;26	y	0.19	9	39.5	9	40;39	y	0.18	4	18.5	4	24;13	y	0.15	8	46.0	8	37;55	y	0.14	3	19.0	3	16;22	y	0.19	9	37.5	9	28;47	y	0.24	13	41.0	13	42;40	y	0.25	11	33.0	11	28;38	y	0.09	4	42.0	4	36;48	y	ENSMUSG00000029022.19	Miip	chr4	protein_coding	migration and invasion inhibitory protein
known_NIR_13304	chr4	147949727	147950323	-	147949727	147950112	A5SS	ENSMUST00000030886.15	known	0.02	1	43	1	43	n	0.08	4	46	4	46	y	0.04	2	46	2	46	y	0.07	4	51	4	51	y	0.07	6	80	6	80	y	0.09	3	31	3	31	y	0.12	11	82	11	82	y	0.00	0	29	0	29	n	0.09	5	52	5	52	y	0.05	4	82	4	82	y	0.12	8	57	8	57	y	0.15	11	63	11	63	y	ENSMUSG00000029022.19	Miip	chr4	protein_coding	migration and invasion inhibitory protein
known_NIR_13305	chr4	147950876	147952878	-	147950876	147952826	A5SS	ENSMUST00000030886.15	known	0.00	0	33	0	33	n	0.00	0	34	0	34	n	0.00	0	50	0	50	n	0.00	0	47	0	47	n	0.00	0	46	0	46	n	0.00	0	22	0	22	n	0.00	0	49	0	49	n	0.00	0	33	0	33	n	0.08	5	59	5	59	y	0.00	0	55	0	55	n	0.00	0	41	0	41	n	0.06	2	31	2	31	y	ENSMUSG00000029022.19	Miip	chr4	protein_coding	migration and invasion inhibitory protein
known_NIR_13306	chr4	147952640	147952826	-	147950876	147952826	A3SS	ENSMUST00000030886.15	known	0.00	0	33	0	33	n	0.00	0	34	0	34	n	0.00	0	50	0	50	n	0.02	1	47	1	47	n	0.00	0	46	0	46	n	0.00	0	22	0	22	n	0.00	0	49	0	49	n	0.03	1	33	1	33	n	0.02	1	59	1	59	n	0.04	2	55	2	55	y	0.00	0	41	0	41	n	0.00	0	31	0	31	n	ENSMUSG00000029022.19	Miip	chr4	protein_coding	migration and invasion inhibitory protein
known_NIR_13307	chr4	147983099;147987467	147987385;147987812	-	147983099	147987812	cassetteExon	ENSMUST00000105716.9	known	0.03	2.0	74	3;1	74	n	0.00	0.0	43	0;0	43	n	0.03	2.0	58	2;2	58	y	0.01	1.5	128	2;1	128	n	0.01	1.0	109	1;1	109	n	0.00	0.0	58	0;0	58	n	0.28	38.5	97	44;33	97	y	0.00	0.0	68	0;0	68	n	0.00	0.0	99	0;0	99	n	0.00	0.5	156	1;0	156	n	0.04	3.5	96	3;4	96	y	0.01	1.5	106	2;1	106	n	ENSMUSG00000029020.14	Mfn2	chr4	protein_coding	mitofusin 2
known_NIR_13308	chr4	147987954	147988846	-	147987954	147988907	A5SS	ENSMUST00000105715.8	known	1.00	4	0	4	0	n	1.00	1	0	1	0	n	0.50	2	2	2	2	n	1.00	2	0	2	0	n	0.29	2	5	2	5	n	1.00	1	0	1	0	n	0.00	0	5	0	5	n	1.00	4	0	4	0	n	0.75	3	1	3	1	n	0.71	10	4	10	4	y	0.00	0	6	0	6	n	1.00	6	0	6	0	n	ENSMUSG00000029020.14	Mfn2	chr4	protein_coding	mitofusin 2
known_NIR_13309	chr4	147987954	147988846	-	147987954	147989115	A5SS	ENSMUST00000105716.9	known	0.12	4	28	4	28	y	0.06	1	15	1	15	n	0.07	2	27	2	27	y	0.03	2	56	2	56	y	0.05	2	42	2	42	y	0.05	1	21	1	21	n	0.00	0	41	0	41	n	0.13	4	26	4	26	y	0.12	3	22	3	22	y	0.15	10	58	10	58	y	0.00	0	31	0	31	n	0.13	6	39	6	39	y	ENSMUSG00000029020.14	Mfn2	chr4	protein_coding	mitofusin 2
known_NIR_13310	chr4	147987954	147988907	-	147987954	147989115	A5SS	ENSMUST00000105716.9	known	0.00	0	28	0	28	n	0.00	0	15	0	15	n	0.07	2	27	2	27	y	0.00	0	56	0	56	n	0.11	5	42	5	42	y	0.00	0	21	0	21	n	0.11	5	41	5	41	y	0.00	0	26	0	26	n	0.04	1	22	1	22	n	0.06	4	58	4	58	y	0.16	6	31	6	31	y	0.00	0	39	0	39	n	ENSMUSG00000029020.14	Mfn2	chr4	protein_coding	mitofusin 2
known_NIR_13311	chr4	148012438	148012915	-	148011577	148012915	A3SS	ENSMUST00000019199.14	known	0.03	3	83	3	83	y	0.05	3	54	3	54	y	0.05	3	62	3	62	y	0.02	2	95	2	95	y	0.05	7	145	7	145	y	0.07	3	39	3	39	y	0.04	4	101	4	101	y	0.02	1	54	1	54	n	0.06	5	78	5	78	y	0.03	3	104	3	104	y	0.07	6	74	6	74	y	0.06	5	84	5	84	y	ENSMUSG00000019055.16	Plod1	chr4	protein_coding	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1
known_NIR_13312	chr4	148016304	148017188	-	148016220	148017188	A3SS	ENSMUST00000019199.14	known	0.00	0	61	0	61	n	0.04	2	44	2	44	y	0.06	5	75	5	75	y	0.00	0	111	0	111	n	0.00	0	116	0	116	n	0.00	0	37	0	37	n	0.00	0	79	0	79	n	0.00	0	63	0	63	n	0.00	0	63	0	63	n	0.02	2	97	2	97	y	0.03	2	59	2	59	y	0.00	0	84	0	84	n	ENSMUSG00000019055.16	Plod1	chr4	protein_coding	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1
known_NIR_13313	chr4	148123866	148126041	+	148123589	148126041	A5SS	ENSMUST00000097788.11	known	1.00	2	0	2	0	n	1.00	2	0	2	0	n	0.93	25	2	25	2	y	1.00	1	0	1	0	n	1.00	11	0	11	0	n	1.00	19	0	19	0	n	0.75	3	1	3	1	n	1.00	9	0	9	0	n	1.00	3	0	3	0	n	1.00	1	0	1	0	n	0.67	2	1	2	1	n	1.00	3	0	3	0	n	ENSMUSG00000029009.18	Mthfr	chr4	protein_coding	methylenetetrahydrofolate reductase
known_NIR_13314	chr4	14818488;14819215	14819095;14822692	-	14818488	14822692	cassetteExon	ENSMUST00000117268.9	known	0.02	1.0	64	2;0	64	n	0.03	1.5	58	0;3	58	n	0.04	4.5	99	1;8	99	n	0.05	4.0	74	4;4	74	y	0.06	7.0	102	7;7	102	y	0.06	4.5	65	5;4	65	y	0.04	3.5	86	4;3	86	y	0.06	4.0	59	4;4	59	y	0.08	5.5	63	8;3	63	y	0.06	6.0	87	4;8	87	y	0.06	3.0	45	5;1	45	n	0.03	3.5	97	6;1	97	n	ENSMUSG00000040550.18	Otud6b	chr4	protein_coding	OTU domain containing 6B
known_NIR_13315	chr4	148229184	148229583	+	148229184	148229561	A3SS	ENSMUST00000084129.9	known	0.05	7	126	7	126	y	0.09	8	84	8	84	y	0.06	12	192	12	192	y	0.03	2	62	2	62	y	0.06	13	195	13	195	y	0.04	4	100	4	100	y	0.04	9	209	9	209	y	0.04	4	86	4	86	y	0.06	5	74	5	74	y	0.04	4	95	4	95	y	0.09	9	94	9	94	y	0.00	0	96	0	96	n	ENSMUSG00000029003.12	Mad2l2	chr4	protein_coding	MAD2 mitotic arrest deficient-like 2
known_NIR_13316	chr4	148234123	148236071	-	148234123	148235545	A5SS	ENSMUST00000105706.8	known	1.00	42	0	42	0	n	0.85	35	6	35	6	y	0.91	52	5	52	5	y	0.98	44	1	44	1	n	0.90	54	6	54	6	y	0.75	30	10	30	10	y	0.90	65	7	65	7	y	0.82	28	6	28	6	y	0.95	36	2	36	2	y	0.97	58	2	58	2	y	0.88	36	5	36	5	y	0.95	41	2	41	2	y	ENSMUSG00000055401.15	Fbxo6	chr4	protein_coding	F-box protein 6
known_NIR_13317	chr4	148234123	148236071	-	148234123	148236470	A5SS	ENSMUST00000168503.8	known	0.41	42	60	42	60	y	0.40	35	52	35	52	y	0.33	52	104	52	104	y	0.52	44	41	44	41	y	0.49	54	57	54	57	y	0.31	30	68	30	68	y	0.56	65	51	65	51	y	0.44	28	35	28	35	y	0.60	36	24	36	24	y	0.53	58	51	58	51	y	0.51	36	34	36	34	y	0.61	41	26	41	26	y	ENSMUSG00000055401.15	Fbxo6	chr4	protein_coding	F-box protein 6
known_NIR_13318	chr4	148234123	148236287	-	148234123	148235545	A5SS	ENSMUST00000105706.8	known	1.00	8	0	8	0	n	0.40	4	6	4	6	y	0.78	18	5	18	5	y	0.90	9	1	9	1	n	0.60	9	6	9	6	y	0.47	9	10	9	10	y	0.67	14	7	14	7	y	0.70	14	6	14	6	y	0.67	4	2	4	2	n	0.71	5	2	5	2	n	0.69	11	5	11	5	y	0.89	16	2	16	2	y	ENSMUSG00000055401.15	Fbxo6	chr4	protein_coding	F-box protein 6
known_NIR_13319	chr4	148234123	148236287	-	148234123	148236071	A5SS	ENSMUST00000030858.14	known	0.16	8	42	8	42	y	0.10	4	35	4	35	y	0.26	18	52	18	52	y	0.17	9	44	9	44	y	0.14	9	54	9	54	y	0.23	9	30	9	30	y	0.18	14	65	14	65	y	0.33	14	28	14	28	y	0.10	4	36	4	36	y	0.08	5	58	5	58	y	0.23	11	36	11	36	y	0.28	16	41	16	41	y	ENSMUSG00000055401.15	Fbxo6	chr4	protein_coding	F-box protein 6
known_NIR_13320	chr4	148234123	148236287	-	148234123	148236399	A5SS	ENSMUST00000056965.12	known	0.50	8	8	8	8	y	0.50	4	4	4	4	n	0.62	18	11	18	11	y	0.35	9	17	9	17	y	0.56	9	7	9	7	y	0.47	9	10	9	10	y	0.56	14	11	14	11	y	0.64	14	8	14	8	y	0.40	4	6	4	6	y	0.33	5	10	5	10	y	0.61	11	7	11	7	y	0.64	16	9	16	9	y	ENSMUSG00000055401.15	Fbxo6	chr4	protein_coding	F-box protein 6
known_NIR_13321	chr4	148234123	148236287	-	148234123	148236470	A5SS	ENSMUST00000168503.8	known	0.12	8	60	8	60	y	0.07	4	52	4	52	y	0.15	18	104	18	104	y	0.18	9	41	9	41	y	0.14	9	57	9	57	y	0.12	9	68	9	68	y	0.22	14	51	14	51	y	0.29	14	35	14	35	y	0.14	4	24	4	24	y	0.09	5	51	5	51	y	0.24	11	34	11	34	y	0.38	16	26	16	26	y	ENSMUSG00000055401.15	Fbxo6	chr4	protein_coding	F-box protein 6
known_NIR_13322	chr4	148234123	148236399	-	148234123	148235545	5pMXE	ENSMUST00000105706.8	known	1.00	8	0	8	0	n	0.40	4	6	4	6	y	0.69	11	5	11	5	y	0.94	17	1	17	1	n	0.54	7	6	7	6	y	0.50	10	10	10	10	y	0.61	11	7	11	7	y	0.57	8	6	8	6	y	0.75	6	2	6	2	n	0.83	10	2	10	2	y	0.58	7	5	7	5	y	0.82	9	2	9	2	y	ENSMUSG00000055401.15	Fbxo6	chr4	protein_coding	F-box protein 6
known_NIR_13323	chr4	148234123	148236399	-	148234123	148236071	5pMXE	ENSMUST00000030858.14	known	0.16	8	42	8	42	y	0.10	4	35	4	35	y	0.17	11	52	11	52	y	0.28	17	44	17	44	y	0.11	7	54	7	54	y	0.25	10	30	10	30	y	0.14	11	65	11	65	y	0.22	8	28	8	28	y	0.14	6	36	6	36	y	0.15	10	58	10	58	y	0.16	7	36	7	36	y	0.18	9	41	9	41	y	ENSMUSG00000055401.15	Fbxo6	chr4	protein_coding	F-box protein 6
known_NIR_13324	chr4	148234123	148236399	-	148234123	148236470	A5SS	ENSMUST00000168503.8	known	0.12	8	60	8	60	y	0.07	4	52	4	52	y	0.10	11	104	11	104	y	0.29	17	41	17	41	y	0.11	7	57	7	57	y	0.13	10	68	10	68	y	0.18	11	51	11	51	y	0.19	8	35	8	35	y	0.20	6	24	6	24	y	0.16	10	51	10	51	y	0.17	7	34	7	34	y	0.26	9	26	9	26	y	ENSMUSG00000055401.15	Fbxo6	chr4	protein_coding	F-box protein 6
known_NIR_13325	chr4	148234123	148236470	-	148234123	148235545	5pMXE	ENSMUST00000105706.8	known	1.00	60	0	60	0	n	0.90	52	6	52	6	y	0.95	104	5	104	5	y	0.98	41	1	41	1	n	0.90	57	6	57	6	y	0.87	68	10	68	10	y	0.88	51	7	51	7	y	0.85	35	6	35	6	y	0.92	24	2	24	2	y	0.96	51	2	51	2	y	0.87	34	5	34	5	y	0.93	26	2	26	2	y	ENSMUSG00000055401.15	Fbxo6	chr4	protein_coding	F-box protein 6
known_NIR_13326	chr4	148238101;148238698	148238615;148240603	-	148238101	148240603	cassetteExon	ENSMUST00000167160.8	known	0.29	2.5	6	1;4	6	n	0.33	1.5	3	2;1	3	n	0.33	1.5	3	3;0	3	n	0.12	1.0	7	2;0	7	n	0.14	2.5	15	2;3	15	y	0.20	0.5	2	0;1	2	n	0.10	1.0	9	2;0	9	n	0.11	0.5	4	0;1	4	n	0.17	1.0	5	2;0	5	n	0.14	1.0	6	1;1	6	n	0.33	2.0	4	3;1	4	n	0.11	0.5	4	1;0	4	n	ENSMUSG00000029001.16	Fbxo44	chr4	protein_coding	F-box protein 44
known_NIR_13327	chr4	148238101;148238890	148238615;148240603	-	148238101	148240603	cassetteExon	ENSMUST00000167160.8	known	0.08	0.5	6	1;0	6	n	0.25	1.0	3	2;0	3	n	0.33	1.5	3	3;0	3	n	0.18	1.5	7	2;1	7	n	0.09	1.5	15	2;1	15	n	0.33	1.0	2	0;2	2	n	0.10	1.0	9	2;0	9	n	0.00	0.0	4	0;0	4	n	0.38	3.0	5	2;4	5	y	0.08	0.5	6	1;0	6	n	0.27	1.5	4	3;0	4	n	0.11	0.5	4	1;0	4	n	ENSMUSG00000029001.16	Fbxo44	chr4	protein_coding	F-box protein 44
known_NIR_13328	chr4	148240738	148241066	-	148240738	148240852	A5SS&ES	ENSMUST00000167160.8	known	0.00	0	9	0	9	n	0.33	2	4	2	4	n	0.25	3	9	3	9	y	0.00	0	14	0	14	n	0.00	0	4	0	4	n	0.38	3	5	3	5	n	0.15	2	11	2	11	y	0.33	1	2	1	2	n	0.20	2	8	2	8	y	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	ENSMUSG00000029001.16	Fbxo44	chr4	protein_coding	F-box protein 44
known_NIR_13329	chr4	148240947	148241066	-	148240947	148241037	A5SS	ENSMUST00000167160.8	known	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.17	2	10	2	10	y	0.00	0	2	0	2	n	0.00	0	17	0	17	n	0.00	0	15	0	15	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	ENSMUSG00000029001.16	Fbxo44	chr4	protein_coding	F-box protein 44
known_NIR_13330	chr4	148243280	148244491	-	148243280	148244200	A5SS	ENSMUST00000057907.10	known	0.00	0	2	0	2	n	0.50	3	3	3	3	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.16	3	16	3	16	y	0.00	0	4	0	4	n	0.08	1	11	1	11	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.11	1	8	1	8	n	0.44	4	5	4	5	n	0.36	5	9	5	9	y	ENSMUSG00000029001.16	Fbxo44	chr4	protein_coding	F-box protein 44
known_NIR_13331	chr4	148657486	148657568	+	148657426	148657568	A5SS	ENSMUST00000017408.14	known	0.03	1	35	1	35	n	0.00	0	27	0	27	n	0.14	3	19	3	19	y	0.05	2	40	2	40	y	0.21	9	33	9	33	y	0.20	3	12	3	12	y	0.15	5	28	5	28	y	0.11	2	16	2	16	y	0.00	0	30	0	30	n	0.09	4	42	4	42	y	0.07	2	28	2	28	y	0.09	3	32	3	32	y	ENSMUSG00000017264.17	Exosc10	chr4	protein_coding	exosome component 10
known_NIR_13332	chr4	148660361	148662875	+	148660361	148660607	3pMXE	ENSMUST00000173767.8	known	0.00	0	47	0	47	n	0.07	4	51	4	51	y	0.04	3	72	3	72	y	0.08	4	45	4	45	y	0.02	1	48	1	48	n	0.00	0	18	0	18	n	0.00	0	59	0	59	n	0.00	0	25	0	25	n	0.05	3	57	3	57	y	0.07	4	54	4	54	y	0.04	2	53	2	53	y	0.00	0	70	0	70	n	ENSMUSG00000017264.17	Exosc10	chr4	protein_coding	exosome component 10
known_NIR_13333	chr4	148660361	148662875	+	148660361;148660681	148660607;148662875	ES	ENSMUST00000017408.14	known	0.00	0	41.5	0	47;36	n	0.08	4	44.5	4	51;38	y	0.04	3	68.0	3	72;64	y	0.09	4	42.0	4	45;39	y	0.02	1	45.0	1	48;42	n	0.00	0	26.0	0	18;34	n	0.00	0	43.0	0	59;27	n	0.00	0	27.0	0	25;29	n	0.06	3	48.5	3	57;40	y	0.07	4	54.5	4	54;55	y	0.04	2	55.0	2	53;57	y	0.00	0	62.5	0	70;55	n	ENSMUSG00000017264.17	Exosc10	chr4	protein_coding	exosome component 10
known_NIR_13334	chr4	148660361	148662875	+	148660681	148662875	5pMXE	ENSMUST00000173892.2	known	0.00	0	36	0	36	n	0.10	4	38	4	38	y	0.04	3	64	3	64	y	0.09	4	39	4	39	y	0.02	1	42	1	42	n	0.00	0	34	0	34	n	0.00	0	27	0	27	n	0.00	0	29	0	29	n	0.07	3	40	3	40	y	0.07	4	55	4	55	y	0.03	2	57	2	57	y	0.00	0	55	0	55	n	ENSMUSG00000017264.17	Exosc10	chr4	protein_coding	exosome component 10
known_NIR_13335	chr4	148678662	148679316	+	148678662	148678744	3pMXE	ENSMUST00000006611.9	known	0.00	0	238	0	238	n	0.01	2	234	2	234	y	0.00	0	275	0	275	n	0.00	0	179	0	179	n	0.00	0	237	0	237	n	0.01	1	166	1	166	n	0.01	2	199	2	199	y	0.01	1	168	1	168	n	0.00	0	135	0	135	n	0.01	2	210	2	210	y	0.00	0	221	0	221	n	0.01	2	155	2	155	y	ENSMUSG00000006442.11	Srm	chr4	protein_coding	spermidine synthase
known_NIR_13336	chr4	148688275	148690037	+	148688275	148688713	3pMXE	ENSMUST00000105701.9	known	0.35	310	567	310	567	y	0.26	220	613	220	613	y	0.48	240	264	240	264	y	0.50	448	440	448	440	y	0.46	527	628	527	628	y	0.44	191	247	191	247	y	0.38	349	581	349	581	y	0.46	235	281	235	281	y	0.44	312	405	312	405	y	0.38	431	718	431	718	y	0.30	228	540	228	540	y	0.44	399	498	399	498	y	ENSMUSG00000028979.18	Masp2	chr4	protein_coding	mannan-binding lectin serine peptidase 2
known_NIR_13337	chr4	148701500	148702023	-	148701301	148702023	A3SS	ENSMUST00000188134.7	known	0.10	6	56	6	56	y	0.13	7	47	7	47	y	0.07	3	41	3	41	y	0.05	2	42	2	42	y	0.09	5	49	5	49	y	0.00	0	27	0	27	n	0.06	5	75	5	75	y	0.00	0	15	0	15	n	0.04	2	49	2	49	y	0.00	0	70	0	70	n	0.06	4	58	4	58	y	0.00	0	61	0	61	n	ENSMUSG00000041459.16	Tardbp	chr4	protein_coding	TAR DNA binding protein
known_NIR_13338	chr4	148702092	148703122	-	148702162	148703122	A3SS	ENSMUST00000165113.8	known	0.00	0	15	0	15	n	0.42	8	11	8	11	y	0.00	0	10	0	10	n	0.13	2	13	2	13	y	0.20	6	24	6	24	y	0.00	0	10	0	10	n	0.29	8	20	8	20	y	0.00	0	6	0	6	n	0.11	2	17	2	17	y	0.30	6	14	6	14	y	0.12	2	15	2	15	y	0.30	7	16	7	16	y	ENSMUSG00000041459.16	Tardbp	chr4	protein_coding	TAR DNA binding protein
known_NIR_13339	chr4	148702162	148703104	-	148702162	148703122	A5SS	ENSMUST00000165113.8	known	0.00	0	15	0	15	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.13	2	13	2	13	y	0.14	4	24	4	24	y	0.00	0	10	0	10	n	0.09	2	20	2	20	y	0.00	0	6	0	6	n	0.11	2	17	2	17	y	0.00	0	14	0	14	n	0.06	1	15	1	15	n	0.16	3	16	3	16	y	ENSMUSG00000041459.16	Tardbp	chr4	protein_coding	TAR DNA binding protein
known_NIR_13340	chr4	148702162	148703131	-	148702162	148703104	A5SS	ENSMUST00000172073.8	known	1.00	18	0	18	0	n	1.00	10	0	10	0	n	1.00	15	0	15	0	n	0.88	14	2	14	2	y	0.79	15	4	15	4	y	1.00	4	0	4	0	n	0.91	20	2	20	2	y	1.00	3	0	3	0	n	0.89	16	2	16	2	y	1.00	15	0	15	0	n	0.89	8	1	8	1	n	0.75	9	3	9	3	y	ENSMUSG00000041459.16	Tardbp	chr4	protein_coding	TAR DNA binding protein
known_NIR_13341	chr4	148702162	148703131	-	148702162	148703122	A5SS	ENSMUST00000165113.8	known	0.55	18	15	18	15	y	0.48	10	11	10	11	y	0.60	15	10	15	10	y	0.52	14	13	14	13	y	0.38	15	24	15	24	y	0.29	4	10	4	10	y	0.50	20	20	20	20	y	0.33	3	6	3	6	n	0.48	16	17	16	17	y	0.52	15	14	15	14	y	0.35	8	15	8	15	y	0.36	9	16	9	16	y	ENSMUSG00000041459.16	Tardbp	chr4	protein_coding	TAR DNA binding protein
known_NIR_13342	chr4	148702282	148703104	-	148702282	148703122	A5SS	ENSMUST00000140897.8	known	0.00	0	6	0	6	n	0.31	4	9	4	9	y	0.00	0	2	0	2	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.38	6	10	6	10	y	0.45	5	6	5	6	y	0.00	0	4	0	4	n	0.17	4	19	4	19	y	0.00	0	11	0	11	n	0.00	0	9	0	9	n	ENSMUSG00000041459.16	Tardbp	chr4	protein_coding	TAR DNA binding protein
known_NIR_13343	chr4	148702282	148703104	-	148702282	148703131	A5SS	ENSMUST00000191450.7	known	0.00	0	6	0	6	n	0.44	4	5	4	5	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.50	6	6	6	6	y	0.62	5	3	5	3	n	0.00	0	6	0	6	n	0.33	4	8	4	8	y	0.00	0	8	0	8	n	0.00	0	9	0	9	n	ENSMUSG00000041459.16	Tardbp	chr4	protein_coding	TAR DNA binding protein
known_NIR_13344	chr4	148702282	148703122	-	148702092	148703122	A3SS	ENSMUST00000105702.9	known	1.00	6	0	6	0	n	0.53	9	8	9	8	y	1.00	2	0	2	0	n	0.88	15	2	15	2	y	0.62	10	6	10	6	y	1.00	4	0	4	0	n	0.56	10	8	10	8	y	1.00	6	0	6	0	n	0.67	4	2	4	2	n	0.76	19	6	19	6	y	0.85	11	2	11	2	y	0.56	9	7	9	7	y	ENSMUSG00000041459.16	Tardbp	chr4	protein_coding	TAR DNA binding protein
known_NIR_13345	chr4	148702282	148703122	-	148702162	148703122	A3SS	ENSMUST00000165113.8	known	0.29	6	15	6	15	y	0.45	9	11	9	11	y	0.17	2	10	2	10	y	0.54	15	13	15	13	y	0.29	10	24	10	24	y	0.29	4	10	4	10	y	0.33	10	20	10	20	y	0.50	6	6	6	6	y	0.19	4	17	4	17	y	0.58	19	14	19	14	y	0.42	11	15	11	15	y	0.36	9	16	9	16	y	ENSMUSG00000041459.16	Tardbp	chr4	protein_coding	TAR DNA binding protein
known_NIR_13346	chr4	148702282	148703131	-	148702162	148703131	A3SS	ENSMUST00000186729.7	known	0.25	6	18	6	18	y	0.33	5	10	5	10	y	0.21	4	15	4	15	y	0.18	3	14	3	14	y	0.17	3	15	3	15	y	0.00	0	4	0	4	n	0.23	6	20	6	20	y	0.50	3	3	3	3	n	0.27	6	16	6	16	y	0.35	8	15	8	15	y	0.50	8	8	8	8	y	0.50	9	9	9	9	y	ENSMUSG00000041459.16	Tardbp	chr4	protein_coding	TAR DNA binding protein
known_NIR_13347	chr4	148702282	148703131	-	148702282	148703122	A5SS	ENSMUST00000140897.8	known	0.50	6	6	6	6	y	0.36	5	9	5	9	y	0.67	4	2	4	2	n	0.17	3	15	3	15	y	0.23	3	10	3	10	y	0.00	0	4	0	4	n	0.38	6	10	6	10	y	0.33	3	6	3	6	n	0.60	6	4	6	4	y	0.30	8	19	8	19	y	0.42	8	11	8	11	y	0.50	9	9	9	9	y	ENSMUSG00000041459.16	Tardbp	chr4	protein_coding	TAR DNA binding protein
known_NIR_13348	chr4	148709833	148710502	-	148709833	148711138	A5SS	ENSMUST00000165113.8	known	0.00	0	153	0	153	n	0.00	0	98	0	98	n	0.01	2	234	2	234	y	0.00	0	211	0	211	n	0.00	1	227	1	227	n	0.01	1	107	1	107	n	0.01	2	167	2	167	y	0.00	0	110	0	110	n	0.01	1	164	1	164	n	0.01	2	167	2	167	y	0.01	1	159	1	159	n	0.02	3	163	3	163	y	ENSMUSG00000041459.16	Tardbp	chr4	protein_coding	TAR DNA binding protein
known_NIR_13349	chr4	149192368	149192556	+	149192368	149201865	A3SS	ENSMUST00000103216.10	known	0.02	1	46	1	46	n	0.00	0	33	0	33	n	0.00	0	57	0	57	n	0.00	0	55	0	55	n	0.03	2	66	2	66	y	0.00	0	31	0	31	n	0.00	0	52	0	52	n	0.00	0	39	0	39	n	0.00	0	33	0	33	n	0.00	0	61	0	61	n	0.00	0	44	0	44	n	0.00	0	61	0	61	n	ENSMUSG00000028974.14	Dffa	chr4	protein_coding	DNA fragmentation factor, alpha subunit
known_NIR_13350	chr4	149322940	149329795	-	149310813	149329795	A3SS	ENSMUST00000238956.2	known	0.24	10	31	10	31	y	0.21	3	11	3	11	y	0.13	8	54	8	54	y	0.21	14	53	14	53	y	0.17	19	90	19	90	y	0.32	11	23	11	23	y	0.29	19	46	19	46	y	0.17	10	48	10	48	y	0.18	9	40	9	40	y	0.14	16	95	16	95	y	0.06	2	32	2	32	y	0.12	11	81	11	81	y	ENSMUSG00000063077.16	Kif1b	chr4	protein_coding	kinesin family member 1B
known_NIR_13351	chr4	149342460	149346593	-	149345658	149346593	A3SS&ES	ENSMUST00000238956.2	known	1.00	29	0	29	0	n	1.00	24	0	24	0	n	0.96	45	2	45	2	y	1.00	47	0	47	0	n	0.97	71	2	71	2	y	0.88	22	3	22	3	y	0.71	52	21	52	21	y	1.00	46	0	46	0	n	0.98	42	1	42	1	n	1.00	70	0	70	0	n	0.97	30	1	30	1	n	0.97	57	2	57	2	y	ENSMUSG00000063077.16	Kif1b	chr4	protein_coding	kinesin family member 1B
known_NIR_13352	chr4	149419760	149420163	-	149419760	149421842	A5SS	ENSMUST00000103212.10	known	0.00	0	75	0	75	n	0.00	0	64	0	64	n	0.00	0	93	0	93	n	0.00	0	100	0	100	n	0.00	0	90	0	90	n	0.00	0	52	0	52	n	0.00	0	93	0	93	n	0.04	2	52	2	52	y	0.00	0	68	0	68	n	0.01	1	115	1	115	n	0.00	0	63	0	63	n	0.00	0	70	0	70	n	ENSMUSG00000028960.21	Ube4b	chr4	protein_coding	ubiquitination factor E4B
known_NIR_13353	chr4	149457426	149463729	-	149457426	149465640	A5SS	ENSMUST00000103212.10	known	0.00	0	20	0	20	n	0.00	0	16	0	16	n	0.00	0	61	0	61	n	0.00	0	53	0	53	n	0.00	0	53	0	53	n	0.00	0	25	0	25	n	0.06	2	30	2	30	y	0.00	0	20	0	20	n	0.00	0	22	0	22	n	0.00	0	42	0	42	n	0.00	0	22	0	22	n	0.00	0	49	0	49	n	ENSMUSG00000028960.21	Ube4b	chr4	protein_coding	ubiquitination factor E4B
known_NIR_13354	chr4	149465228	149465640	-	149457426	149465640	A3SS	ENSMUST00000103212.10	known	0.00	0	20	0	20	n	0.00	0	16	0	16	n	0.00	0	61	0	61	n	0.00	0	53	0	53	n	0.00	0	53	0	53	n	0.00	0	25	0	25	n	0.06	2	30	2	30	y	0.00	0	20	0	20	n	0.00	0	22	0	22	n	0.00	0	42	0	42	n	0.00	0	22	0	22	n	0.00	0	49	0	49	n	ENSMUSG00000028960.21	Ube4b	chr4	protein_coding	ubiquitination factor E4B
known_NIR_13355	chr4	149738592	149738682	-	149738595	149738682	A3SS	ENSMUST00000038859.14	known	0.80	4	1	4	1	n	0.60	6	4	6	4	y	0.80	8	2	8	2	y	1.00	3	0	3	0	n	0.60	3	2	3	2	n	-	-	-	-	-	-	0.67	4	2	4	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	n	1.00	4	0	4	0	n	0.57	4	3	4	3	n	ENSMUSG00000039936.19	Pik3cd	chr4	protein_coding	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta
known_NIR_13356	chr4	149816413	149822007	-	149816413	149822292	A5SS	ENSMUST00000105687.9	known	0.00	0	17	0	17	n	0.18	2	9	2	9	y	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.00	0	20	0	20	n	0.14	1	6	1	6	n	0.00	0	8	0	8	n	0.08	1	11	1	11	n	0.00	0	4	0	4	n	0.05	1	19	1	19	n	0.00	0	11	0	11	n	0.00	0	18	0	18	n	ENSMUSG00000044700.16	Tmem201	chr4	protein_coding	transmembrane protein 201
known_NIR_13357	chr4	150080838	150085607	-	150080838	150087489	A5SS	ENSMUST00000084117.13	known	0.00	1	327	1	327	n	0.00	0	236	0	236	n	0.00	1	929	1	929	n	0.00	1	570	1	570	n	0.00	5	1000	5	1000	y	0.00	2	598	2	598	y	0.00	1	625	1	625	n	0.00	0	598	0	598	n	0.01	2	362	2	362	y	0.00	1	571	1	571	n	0.00	1	330	1	330	n	0.01	3	540	3	540	y	ENSMUSG00000028980.15	H6pd	chr4	protein_coding	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)
known_NIR_13358	chr4	150080838	150085607	-	150080838	150093208	A5SS	ENSMUST00000030830.4	known	0.06	1	17	1	17	n	0.00	0	18	0	18	n	0.06	1	17	1	17	n	0.05	1	21	1	21	n	0.09	5	50	5	50	y	0.06	2	30	2	30	y	0.03	1	28	1	28	n	0.00	0	31	0	31	n	0.09	2	21	2	21	y	0.02	1	47	1	47	n	0.03	1	31	1	31	n	0.07	3	38	3	38	y	ENSMUSG00000028980.15	H6pd	chr4	protein_coding	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)
known_NIR_13359	chr4	150080838	150093208	-	150080838	150087489	5pMXE	ENSMUST00000084117.13	known	0.05	17	327	17	327	y	0.07	18	236	18	236	y	0.02	17	929	17	929	y	0.04	21	570	21	570	y	0.05	50	1000	50	1000	y	0.05	30	598	30	598	y	0.04	28	625	28	625	y	0.05	31	598	31	598	y	0.05	21	362	21	362	y	0.08	47	571	47	571	y	0.09	31	330	31	330	y	0.07	38	540	38	540	y	ENSMUSG00000028980.15	H6pd	chr4	protein_coding	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)
known_NIR_13360	chr4	150321797	150323930	+	150321328	150323930	A5SS	ENSMUST00000150175.8	known	1.00	405	0	405	0	n	1.00	361	0	361	0	n	1.00	702	0	702	0	n	1.00	517	0	517	0	n	1.00	549	0	549	0	n	1.00	255	0	255	0	n	1.00	500	0	500	0	n	1.00	292	1	292	1	n	1.00	354	1	354	1	n	1.00	632	2	632	2	y	1.00	515	0	515	0	n	1.00	494	0	494	0	n	ENSMUSG00000063524.14	Eno1	chr4	protein_coding	enolase 1, alpha non-neuron
known_NIR_13361	chr4	150322290	150323930	+	150321797	150323930	A5SS	ENSMUST00000080926.13	known	0.00	0	405	0	405	n	0.00	0	361	0	361	n	0.00	0	702	0	702	n	0.00	0	517	0	517	n	0.00	0	549	0	549	n	0.00	0	255	0	255	n	0.00	0	500	0	500	n	0.00	0	292	0	292	n	0.00	0	354	0	354	n	0.00	2	632	2	632	y	0.00	0	515	0	515	n	0.00	0	494	0	494	n	ENSMUSG00000063524.14	Eno1	chr4	protein_coding	enolase 1, alpha non-neuron
known_NIR_13362	chr4	150325597	150326224	+	150325597	150326579	A3SS	ENSMUST00000141931.2	known	0.00	0	481	0	481	n	0.00	0	403	0	403	n	0.00	0	854	0	854	n	0.00	0	643	0	643	n	0.00	0	578	0	578	n	0.00	0	302	0	302	n	0.01	4	590	4	590	y	0.00	0	386	0	386	n	0.00	0	478	0	478	n	0.00	0	799	0	799	n	0.00	0	585	0	585	n	0.00	0	664	0	664	n	ENSMUSG00000063524.14	Eno1	chr4	protein_coding	enolase 1, alpha non-neuron
known_NIR_13363	chr4	150325597;150326282	150326224;150328462	+	150325597;150326637	150326579;150328462	MXE	ENSMUST00000150175.8	known	0.00	0.0	513.5	0;0	481;546	n	0.00	0.0	427.0	0;0	403;451	n	0.00	0.0	920.0	0;0	854;986	n	0.00	0.0	683.0	0;0	643;723	n	0.00	0.0	618.0	0;0	578;658	n	0.00	0.0	319.0	0;0	302;336	n	0.01	4.0	622.5	4;4	590;655	y	0.00	0.0	390.5	0;0	386;395	n	0.00	0.0	508.0	0;0	478;538	n	0.00	0.0	876.0	0;0	799;953	n	0.00	0.0	619.0	0;0	585;653	n	0.00	0.0	677.5	0;0	664;691	n	ENSMUSG00000063524.14	Eno1	chr4	protein_coding	enolase 1, alpha non-neuron
known_NIR_13364	chr4	150366532	150366771	+	150366532	150490653	A3SS	ENSMUST00000105682.9	known	0.00	0	3	0	3	n	-	-	-	-	-	-	0.50	2	2	2	2	n	0.62	5	3	5	3	n	0.00	0	6	0	6	n	0.29	2	5	2	5	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.17	1	5	1	5	n	0.40	2	3	2	3	n	0.45	5	6	5	6	y	ENSMUSG00000039852.18	Rere	chr4	protein_coding	arginine glutamic acid dipeptide (RE) repeats
known_NIR_13365	chr4	150516050	150553152	+	150516050;150523925	150523800;150553152	ES	ENSMUST00000105682.9	known	0.14	1	6.0	1	7;5	n	0.25	2	6.0	2	8;4	y	0.46	3	3.5	3	2;5	y	0.14	1	6.0	1	8;4	n	0.00	0	13.0	0	18;8	n	0.31	2	4.5	2	4;5	y	0.30	3	7.0	3	8;6	y	0.12	1	7.0	1	9;5	n	0.15	1	5.5	1	6;5	n	0.00	0	7.0	0	10;4	n	0.44	2	2.5	2	5;0	n	0.10	1	9.5	1	13;6	n	ENSMUSG00000039852.18	Rere	chr4	protein_coding	arginine glutamic acid dipeptide (RE) repeats
known_NIR_13366	chr4	150654143	150654673	+	150619402	150654673	A5SS	ENSMUST00000105682.9	known	0.50	4	4	4	4	n	1.00	2	0	2	0	n	0.44	4	5	4	5	n	0.32	6	13	6	13	y	0.22	4	14	4	14	y	0.25	2	6	2	6	n	0.29	5	12	5	12	y	0.21	4	15	4	15	y	0.27	4	11	4	11	y	0.38	9	15	9	15	y	0.10	1	9	1	9	n	0.64	7	4	7	4	y	ENSMUSG00000039852.18	Rere	chr4	protein_coding	arginine glutamic acid dipeptide (RE) repeats
known_NIR_13367	chr4	150700620	150701213	+	150700620	150701216	A3SS	ENSMUST00000105682.9	known	0.21	5	19	5	19	y	0.27	4	11	4	11	y	0.20	5	20	5	20	y	0.22	6	21	6	21	y	0.31	12	27	12	27	y	0.69	11	5	11	5	y	0.30	12	28	12	28	y	0.20	3	12	3	12	y	0.47	7	8	7	8	y	0.30	12	28	12	28	y	0.27	7	19	7	19	y	0.30	8	19	8	19	y	ENSMUSG00000039852.18	Rere	chr4	protein_coding	arginine glutamic acid dipeptide (RE) repeats
known_NIR_13368	chr4	150703009	150703458	+	150703009	150703482	A3SS	ENSMUST00000105682.9	known	0.06	1	17	1	17	n	0.26	5	14	5	14	y	0.20	4	16	4	16	y	0.11	3	24	3	24	y	0.08	2	24	2	24	y	0.00	0	14	0	14	n	0.12	5	38	5	38	y	0.11	2	17	2	17	y	0.17	4	20	4	20	y	0.06	2	29	2	29	y	0.16	4	21	4	21	y	0.05	1	18	1	18	n	ENSMUSG00000039852.18	Rere	chr4	protein_coding	arginine glutamic acid dipeptide (RE) repeats
known_NIR_13369	chr4	150939728	150949532	+	150938562	150949532	A5SS	ENSMUST00000073600.9	known	0.97	1141	36	1141	36	y	0.96	949	44	949	44	y	0.97	1440	41	1440	41	y	0.99	1504	20	1504	20	y	0.98	1881	40	1881	40	y	0.98	1006	18	1006	18	y	0.98	1492	24	1492	24	y	0.99	969	13	969	13	y	0.98	727	18	727	18	y	0.97	1535	45	1535	45	y	0.99	678	4	678	4	y	0.98	1311	27	1311	27	y	ENSMUSG00000028967.11	Errfi1	chr4	protein_coding	ERBB receptor feedback inhibitor 1
known_NIR_13370	chr4	150939728	150949532	+	150939728	150939925	3pMXE	ENSMUST00000128640.8	known	0.98	1141	23	1141	23	y	0.98	949	16	949	16	y	0.94	1440	95	1440	95	y	0.98	1504	24	1504	24	y	0.98	1881	29	1881	29	y	0.95	1006	56	1006	56	y	0.98	1492	30	1492	30	y	0.97	969	31	969	31	y	0.99	727	9	727	9	y	0.99	1535	11	1535	11	y	0.97	678	20	678	20	y	0.99	1311	17	1311	17	y	ENSMUSG00000028967.11	Errfi1	chr4	protein_coding	ERBB receptor feedback inhibitor 1
known_NIR_13371	chr4	150985551	150985996	-	150985551	150988272	A5SS	ENSMUST00000030805.14	known	0.00	0	924	0	924	n	0.00	0	1034	0	1034	n	0.00	1	744	1	744	n	0.00	0	929	0	929	n	0.00	0	1012	0	1012	n	0.00	0	514	0	514	n	0.02	26	1232	26	1232	y	0.00	1	478	1	478	n	0.00	0	779	0	779	n	0.00	0	1246	0	1246	n	0.00	1	1106	1	1106	n	0.00	0	1044	0	1044	n	ENSMUSG00000028964.15	Park7	chr4	protein_coding	Parkinson disease (autosomal recessive, early onset) 7
known_NIR_13372	chr4	150992880	150993649	-	150992880	150993848	A5SS	ENSMUST00000105674.8	known	0.47	37	42	37	42	y	0.45	37	46	37	46	y	0.68	67	31	67	31	y	0.55	51	41	51	41	y	0.53	57	50	57	50	y	0.39	25	39	25	39	y	0.53	57	51	57	51	y	0.56	44	34	44	34	y	0.53	44	39	44	39	y	0.55	70	58	70	58	y	0.52	48	44	48	44	y	0.52	80	73	80	73	y	ENSMUSG00000028964.15	Park7	chr4	protein_coding	Parkinson disease (autosomal recessive, early onset) 7
known_NIR_13373	chr4	150992880	150993649	-	150992880	150994240	A5SS	ENSMUST00000030805.14	known	0.06	37	571	37	571	y	0.07	37	482	37	482	y	0.14	67	410	67	410	y	0.09	51	509	51	509	y	0.09	57	562	57	562	y	0.07	25	334	25	334	y	0.08	57	646	57	646	y	0.14	44	275	44	275	y	0.09	44	456	44	456	y	0.09	70	685	70	685	y	0.09	48	507	48	507	y	0.13	80	521	80	521	y	ENSMUSG00000028964.15	Park7	chr4	protein_coding	Parkinson disease (autosomal recessive, early onset) 7
known_NIR_13374	chr4	150992880	150993649	-	150992880	150998777	A5SS	ENSMUST00000105675.8	known	0.64	37	21	37	21	y	0.74	37	13	37	13	y	0.73	67	25	67	25	y	0.72	51	20	51	20	y	0.69	57	26	57	26	y	0.62	25	15	25	15	y	0.73	57	21	57	21	y	0.72	44	17	44	17	y	0.61	44	28	44	28	y	0.75	70	23	70	23	y	0.83	48	10	48	10	y	0.78	80	23	80	23	y	ENSMUSG00000028964.15	Park7	chr4	protein_coding	Parkinson disease (autosomal recessive, early onset) 7
known_NIR_13375	chr4	150992880	150993848	-	150992880	150994240	A5SS	ENSMUST00000030805.14	known	0.07	42	571	42	571	y	0.09	46	482	46	482	y	0.07	31	410	31	410	y	0.07	41	509	41	509	y	0.08	50	562	50	562	y	0.10	39	334	39	334	y	0.07	51	646	51	646	y	0.11	34	275	34	275	y	0.08	39	456	39	456	y	0.08	58	685	58	685	y	0.08	44	507	44	507	y	0.12	73	521	73	521	y	ENSMUSG00000028964.15	Park7	chr4	protein_coding	Parkinson disease (autosomal recessive, early onset) 7
known_NIR_13376	chr4	150992880	150993848	-	150992880	150998777	A5SS	ENSMUST00000105675.8	known	0.67	42	21	42	21	y	0.78	46	13	46	13	y	0.55	31	25	31	25	y	0.67	41	20	41	20	y	0.66	50	26	50	26	y	0.72	39	15	39	15	y	0.71	51	21	51	21	y	0.67	34	17	34	17	y	0.58	39	28	39	28	y	0.72	58	23	58	23	y	0.81	44	10	44	10	y	0.76	73	23	73	23	y	ENSMUSG00000028964.15	Park7	chr4	protein_coding	Parkinson disease (autosomal recessive, early onset) 7
known_NIR_13377	chr4	150992880	150998348	-	150992880	150993649	5pMXE	ENSMUST00000128075.8	known	0.00	0	37	0	37	n	0.00	0	37	0	37	n	0.00	0	67	0	67	n	0.00	0	51	0	51	n	0.00	0	57	0	57	n	0.00	0	25	0	25	n	0.00	0	57	0	57	n	0.02	1	44	1	44	n	0.00	0	44	0	44	n	0.00	0	70	0	70	n	0.00	0	48	0	48	n	0.02	2	80	2	80	y	ENSMUSG00000028964.15	Park7	chr4	protein_coding	Parkinson disease (autosomal recessive, early onset) 7
known_NIR_13378	chr4	150992880	150998348	-	150992880	150993848	5pMXE	ENSMUST00000105673.8	known	0.00	0	42	0	42	n	0.00	0	46	0	46	n	0.00	0	31	0	31	n	0.00	0	41	0	41	n	0.00	0	50	0	50	n	0.00	0	39	0	39	n	0.00	0	51	0	51	n	0.03	1	34	1	34	n	0.00	0	39	0	39	n	0.00	0	58	0	58	n	0.00	0	44	0	44	n	0.03	2	73	2	73	y	ENSMUSG00000028964.15	Park7	chr4	protein_coding	Parkinson disease (autosomal recessive, early onset) 7
known_NIR_13379	chr4	150992880	150998348	-	150992880	150994240	5pMXE	ENSMUST00000030805.14	known	0.00	0	571	0	571	n	0.00	0	482	0	482	n	0.00	0	410	0	410	n	0.00	0	509	0	509	n	0.00	0	562	0	562	n	0.00	0	334	0	334	n	0.00	0	646	0	646	n	0.00	1	275	1	275	n	0.00	0	456	0	456	n	0.00	0	685	0	685	n	0.00	0	507	0	507	n	0.00	2	521	2	521	y	ENSMUSG00000028964.15	Park7	chr4	protein_coding	Parkinson disease (autosomal recessive, early onset) 7
known_NIR_13380	chr4	150992880	150998348	-	150992880	150998777	A5SS	ENSMUST00000105675.8	known	0.00	0	21	0	21	n	0.00	0	13	0	13	n	0.00	0	25	0	25	n	0.00	0	20	0	20	n	0.00	0	26	0	26	n	0.00	0	15	0	15	n	0.00	0	21	0	21	n	0.06	1	17	1	17	n	0.00	0	28	0	28	n	0.00	0	23	0	23	n	0.00	0	10	0	10	n	0.08	2	23	2	23	y	ENSMUSG00000028964.15	Park7	chr4	protein_coding	Parkinson disease (autosomal recessive, early onset) 7
known_NIR_13381	chr4	150992880	150998777	-	150992880	150994240	5pMXE	ENSMUST00000030805.14	known	0.04	21	571	21	571	y	0.03	13	482	13	482	y	0.06	25	410	25	410	y	0.04	20	509	20	509	y	0.04	26	562	26	562	y	0.04	15	334	15	334	y	0.03	21	646	21	646	y	0.06	17	275	17	275	y	0.06	28	456	28	456	y	0.03	23	685	23	685	y	0.02	10	507	10	507	y	0.04	23	521	23	521	y	ENSMUSG00000028964.15	Park7	chr4	protein_coding	Parkinson disease (autosomal recessive, early onset) 7
known_NIR_13382	chr4	151097386	151097999	-	151097389	151097999	A3SS	ENSMUST00000103204.11	known	0.21	6	22	6	22	y	0.15	2	11	2	11	y	0.00	0	5	0	5	n	0.36	10	18	10	18	y	0.17	1	5	1	5	n	-	-	-	-	-	-	0.37	7	12	7	12	y	0.00	0	3	0	3	n	0.13	3	20	3	20	y	0.17	7	34	7	34	y	0.20	3	12	3	12	y	0.26	9	25	9	25	y	ENSMUSG00000028957.13	Per3	chr4	protein_coding	period circadian clock 3
known_NIR_13383	chr4	151102523	151103309	-	151102523;151102790	151102675;151103309	ES	ENSMUST00000103204.11	known	0.00	0	15.0	0	15;15	n	0.00	0	22.0	0	23;21	n	0.00	0	0.5	0	0;1	n	0.07	2	28.0	2	27;29	y	0.00	0	17.5	0	17;18	n	0.00	0	1.0	0	0;2	n	0.00	0	15.0	0	14;16	n	0.00	0	4.5	0	2;7	n	0.00	0	20.0	0	15;25	n	0.00	0	41.5	0	43;40	n	0.00	0	30.0	0	29;31	n	0.00	0	23.5	0	25;22	n	ENSMUSG00000028957.13	Per3	chr4	protein_coding	period circadian clock 3
known_NIR_13384	chr4	151914993	151946082	-	151914993;151920340	151920271;151946082	ES	ENSMUST00000169423.9	known	0.06	2	29.0	2	32;26	y	0.23	5	16.5	5	21;12	y	0.18	5	22.5	5	28;17	y	0.21	5	19.0	5	28;10	y	0.06	2	33.5	2	41;26	y	0.13	3	20.0	3	22;18	y	0.17	7	35.0	7	30;40	y	0.00	0	16.5	0	20;13	n	0.03	1	29.0	1	33;25	n	0.27	11	30.5	11	35;26	y	0.04	2	43.0	2	47;39	y	0.00	0	27.5	0	30;25	n	ENSMUSG00000014592.22	Camta1	chr4	protein_coding	calmodulin binding transcription activator 1
known_NIR_13385	chr4	152062807	152063729	+	152062525	152063729	A5SS	ENSMUST00000062904.11	known	0.00	0	108	0	108	n	0.00	0	133	0	133	n	0.00	0	141	0	141	n	0.00	0	106	0	106	n	0.00	0	131	0	131	n	0.00	0	76	0	76	n	0.00	0	122	0	122	n	0.00	0	70	0	70	n	0.00	0	98	0	98	n	0.00	0	133	0	133	n	0.00	0	104	0	104	n	0.01	2	151	2	151	y	ENSMUSG00000039768.17	Dnajc11	chr4	protein_coding	DnaJ heat shock protein family (Hsp40) member C11
known_NIR_13386	chr4	152067809	152070126	-	152067809;152068193	152068092;152070126	ES	ENSMUST00000036680.8	known	0.00	0	18.0	0	19;17	n	0.00	0	26.5	0	25;28	n	0.00	0	19.0	0	16;22	n	0.00	0	26.0	0	30;22	n	0.00	0	30.0	0	30;30	n	0.00	0	14.0	0	19;9	n	0.00	0	32.0	0	30;34	n	0.00	0	14.0	0	17;11	n	0.00	0	21.0	0	22;20	n	0.00	0	33.5	0	36;31	n	0.08	3	32.5	3	27;38	y	0.00	0	25.0	0	24;26	n	ENSMUSG00000039759.11	Thap3	chr4	protein_coding	THAP domain containing, apoptosis associated protein 3
known_NIR_13387	chr4	152105165	152105236	-	152105161	152105236	A3SS	ENSMUST00000155389.8	known	1.00	40	0	40	0	n	1.00	35	0	35	0	n	1.00	26	0	26	0	n	1.00	33	0	33	0	n	0.96	50	2	50	2	y	0.77	10	3	10	3	y	0.91	30	3	30	3	y	0.88	21	3	21	3	y	1.00	16	0	16	0	n	0.90	38	4	38	4	y	0.89	32	4	32	4	y	0.84	27	5	27	5	y	ENSMUSG00000028952.13	Zbtb48	chr4	protein_coding	zinc finger and BTB domain containing 48
known_NIR_13388	chr4	152106691	152107153	-	152106576	152107153	A3SS	ENSMUST00000155389.8	known	0.39	12	19	12	19	y	0.43	15	20	15	20	y	0.60	15	10	15	10	y	0.30	14	33	14	33	y	0.38	18	30	18	30	y	0.45	10	12	10	12	y	0.42	22	31	22	31	y	0.33	6	12	6	12	y	0.37	13	22	13	22	y	0.43	19	25	19	25	y	0.16	4	21	4	21	y	0.32	17	36	17	36	y	ENSMUSG00000028952.13	Zbtb48	chr4	protein_coding	zinc finger and BTB domain containing 48
known_NIR_13389	chr4	152111516	152112022	-	152111516	152112000	A5SS	ENSMUST00000155389.8	known	0.06	1	17	1	17	n	0.22	4	14	4	14	y	0.00	0	10	0	10	n	0.00	0	21	0	21	n	0.13	3	20	3	20	y	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.12	3	21	3	21	y	0.00	0	16	0	16	n	0.04	1	25	1	25	n	ENSMUSG00000028952.13	Zbtb48	chr4	protein_coding	zinc finger and BTB domain containing 48
known_NIR_13390	chr4	152130287	152131004	+	152130287;152130492	152130405;152131004	ES	ENSMUST00000084116.13	known	0.00	0	15.0	0	10;20	n	0.08	1	11.0	1	11;11	n	0.00	0	21.5	0	20;23	n	0.00	0	26.5	0	26;27	n	0.08	2	22.5	2	20;25	y	0.00	0	9.0	0	7;11	n	0.00	0	16.0	0	15;17	n	0.00	0	13.0	0	14;12	n	0.00	0	12.5	0	13;12	n	0.07	1	14.0	1	10;18	n	0.07	1	13.0	1	12;14	n	0.00	0	18.5	0	20;17	n	ENSMUSG00000028948.17	Nol9	chr4	protein_coding	nucleolar protein 9
known_NIR_13391	chr4	152142381	152145710	+	152142381	152142798	3pMXE	ENSMUST00000084116.13	known	0.00	0	33	0	33	n	0.07	1	14	1	14	n	0.03	1	37	1	37	n	0.08	1	12	1	12	n	0.08	4	45	4	45	y	0.00	0	23	0	23	n	0.03	1	31	1	31	n	0.00	0	11	0	11	n	0.00	0	26	0	26	n	0.00	0	34	0	34	n	0.05	1	20	1	20	n	0.00	0	34	0	34	n	ENSMUSG00000028948.17	Nol9	chr4	protein_coding	nucleolar protein 9
known_NIR_13392	chr4	152382371	152383142	+	152382025	152383142	A5SS	ENSMUST00000048892.14	known	0.04	1	22	1	22	n	0.00	0	16	0	16	n	0.05	2	36	2	36	y	0.00	0	21	0	21	n	0.00	0	24	0	24	n	0.15	2	11	2	11	y	0.00	0	22	0	22	n	0.07	1	13	1	13	n	0.00	0	20	0	20	n	0.00	0	35	0	35	n	0.00	0	19	0	19	n	0.00	0	19	0	19	n	ENSMUSG00000039662.17	Icmt	chr4	protein_coding	isoprenylcysteine carboxyl methyltransferase
known_NIR_13393	chr4	152383230;152383702	152383594;152384128	+	152383230	152384128	cassetteExon	ENSMUST00000048892.14	known	0.03	1.0	29	0;2	29	n	0.10	1.5	13	1;2	13	n	0.26	11.0	32	9;13	32	y	0.11	5.0	41	4;6	41	y	0.24	9.5	30	7;12	30	y	0.27	6.5	18	7;6	18	y	0.22	8.5	31	6;11	31	y	0.17	6.0	29	5;7	29	y	0.09	2.0	20	2;2	20	y	0.06	3.5	51	3;4	51	y	0.10	3.5	32	3;4	32	y	0.07	3.0	43	2;4	43	y	ENSMUSG00000039662.17	Icmt	chr4	protein_coding	isoprenylcysteine carboxyl methyltransferase
known_NIR_13394	chr4	152411816	152411938	+	152410352	152411938	A5SS	ENSMUST00000142735.8	known	0.00	0	341	0	341	n	0.00	0	340	0	340	n	0.00	0	416	0	416	n	0.00	0	309	0	309	n	0.00	0	418	0	418	n	0.02	4	226	4	226	y	0.00	0	453	0	453	n	0.00	0	210	0	210	n	0.01	3	294	3	294	y	0.00	0	425	0	425	n	0.00	0	383	0	383	n	0.00	0	365	0	365	n	ENSMUSG00000028936.16	Rpl22	chr4	protein_coding	ribosomal protein L22
known_NIR_13395	chr4	152412042	152413717	+	152412042	152414461	A3SS	ENSMUST00000142735.8	known	0.01	8	1177	8	1177	y	0.01	8	1251	8	1251	y	0.00	0	1336	0	1336	n	0.01	10	934	10	934	y	0.00	5	1408	5	1408	y	0.00	2	706	2	706	y	0.00	2	1486	2	1486	y	0.00	2	680	2	680	y	0.01	7	1006	7	1006	y	0.00	6	1456	6	1456	y	0.01	8	1286	8	1286	y	0.01	8	1316	8	1316	y	ENSMUSG00000028936.16	Rpl22	chr4	protein_coding	ribosomal protein L22
known_NIR_13396	chr4	152414585	152416717	+	152414585	152416737	A3SS	ENSMUST00000142735.8	known	0.00	2	1320	2	1320	y	0.00	1	1351	1	1351	n	0.00	0	1326	0	1326	n	0.00	1	989	1	989	n	0.00	5	1433	5	1433	y	0.00	0	779	0	779	n	0.00	4	1586	4	1586	y	0.00	1	729	1	729	n	0.00	1	967	1	967	n	0.00	2	1580	2	1580	y	0.00	2	1371	2	1371	y	0.00	2	1506	2	1506	y	ENSMUSG00000028936.16	Rpl22	chr4	protein_coding	ribosomal protein L22
known_NIR_13397	chr4	154041779	154044213	+	154041779	154044206	A3SS	ENSMUST00000058393.9	known	0.08	5	55	5	55	y	0.04	2	52	2	52	y	0.00	0	45	0	45	n	0.07	5	65	5	65	y	0.04	2	52	2	52	y	0.10	3	27	3	27	y	0.06	4	59	4	59	y	0.16	5	27	5	27	y	0.00	0	57	0	57	n	0.05	4	76	4	76	y	0.05	3	57	3	57	y	0.12	9	67	9	67	y	ENSMUSG00000047613.11	A430005L14Rik	chr4	protein_coding	RIKEN cDNA A430005L14 gene
known_NIR_13398	chr4	154041779	154044988	+	154041779	154044206	3pMXE	ENSMUST00000139967.2	known	0.04	2	55	2	55	y	0.00	0	52	0	52	n	0.04	2	45	2	45	y	0.00	0	65	0	65	n	0.00	0	52	0	52	n	0.00	0	27	0	27	n	0.02	1	59	1	59	n	0.00	0	27	0	27	n	0.00	0	57	0	57	n	0.03	2	76	2	76	y	0.03	2	57	2	57	y	0.03	2	67	2	67	y	ENSMUSG00000047613.11	A430005L14Rik	chr4	protein_coding	RIKEN cDNA A430005L14 gene
known_NIR_13399	chr4	154041779	154044988	+	154044319	154044988	5pMXE	ENSMUST00000128457.2	known	0.01	2	139	2	139	y	0.00	0	151	0	151	n	0.02	2	122	2	122	y	0.00	0	184	0	184	n	0.00	0	174	0	174	n	0.00	0	93	0	93	n	0.01	1	182	1	182	n	0.00	0	76	0	76	n	0.00	0	145	0	145	n	0.01	2	203	2	203	y	0.01	2	155	2	155	y	0.01	2	164	2	164	y	ENSMUSG00000047613.11	A430005L14Rik	chr4	protein_coding	RIKEN cDNA A430005L14 gene
known_NIR_13400	chr4	154041779;154044319	154044206;154044988	+	154041779	154044988	cassetteExon	ENSMUST00000105645.9	known	0.98	97.0	2	55;139	2	y	1.00	101.5	0	52;151	0	n	0.98	83.5	2	45;122	2	y	1.00	124.5	0	65;184	0	n	1.00	113.0	0	52;174	0	n	1.00	60.0	0	27;93	0	n	0.99	120.5	1	59;182	1	n	1.00	51.5	0	27;76	0	n	1.00	101.0	0	57;145	0	n	0.99	139.5	2	76;203	2	y	0.98	106.0	2	57;155	2	y	0.98	115.5	2	67;164	2	y	ENSMUSG00000047613.11	A430005L14Rik	chr4	protein_coding	RIKEN cDNA A430005L14 gene
known_NIR_13401	chr4	154041779;154044319	154044213;154044988	+	154041779	154044988	cassetteExon	ENSMUST00000105645.9	known	0.97	72.0	2	5;139	2	y	1.00	76.5	0	2;151	0	n	0.97	61.0	2	0;122	2	n	1.00	94.5	0	5;184	0	n	1.00	88.0	0	2;174	0	n	1.00	48.0	0	3;93	0	n	0.99	93.0	1	4;182	1	n	1.00	40.5	0	5;76	0	n	1.00	72.5	0	0;145	0	n	0.98	103.5	2	4;203	2	y	0.98	79.0	2	3;155	2	y	0.98	86.5	2	9;164	2	y	ENSMUSG00000047613.11	A430005L14Rik	chr4	protein_coding	RIKEN cDNA A430005L14 gene
known_NIR_13402	chr4	154107910	154108051	-	154107910	154108145	A5SS	ENSMUST00000182151.8	known	0.15	2	11	2	11	y	0.07	1	13	1	13	n	0.00	0	4	0	4	n	0.00	0	16	0	16	n	0.04	2	47	2	47	y	0.00	0	11	0	11	n	0.03	1	36	1	36	n	0.14	2	12	2	12	y	0.12	2	14	2	14	y	0.00	0	30	0	30	n	0.00	0	26	0	26	n	0.20	2	8	2	8	y	ENSMUSG00000078350.12	Smim1	chr4	protein_coding	small integral membrane protein 1
known_NIR_13403	chr4	154108274	154109961	-	154108274	154108524	5pMXE	ENSMUST00000145527.8	known	0.33	4	8	4	8	y	0.92	12	1	12	1	n	1.00	2	0	2	0	n	0.43	3	4	3	4	n	1.00	12	0	12	0	n	0.75	3	1	3	1	n	1.00	15	0	15	0	n	1.00	3	0	3	0	n	0.83	5	1	5	1	n	0.79	15	4	15	4	y	0.73	8	3	8	3	y	0.50	3	3	3	3	n	ENSMUSG00000078350.12	Smim1	chr4	protein_coding	small integral membrane protein 1
known_NIR_13404	chr4	154108274	154109961	-	154108348	154109961	A3SS	ENSMUST00000182191.8	known	0.20	4	16	4	16	y	0.46	12	14	12	14	y	0.50	2	2	2	2	n	0.43	3	4	3	4	n	0.43	12	16	12	16	y	0.27	3	8	3	8	y	0.48	15	16	15	16	y	0.30	3	7	3	7	y	0.45	5	6	5	6	y	0.38	15	24	15	24	y	0.30	8	19	8	19	y	0.13	3	20	3	20	y	ENSMUSG00000078350.12	Smim1	chr4	protein_coding	small integral membrane protein 1
known_NIR_13405	chr4	154108274	154109961	-	154108807	154109961	A3SS&ES	ENSMUST00000146543.9	known	1.00	4	0	4	0	n	1.00	12	0	12	0	n	1.00	2	0	2	0	n	0.75	3	1	3	1	n	0.86	12	2	12	2	y	1.00	3	0	3	0	n	0.88	15	2	15	2	y	0.75	3	1	3	1	n	0.56	5	4	5	4	n	1.00	15	0	15	0	n	0.53	8	7	8	7	y	1.00	3	0	3	0	n	ENSMUSG00000078350.12	Smim1	chr4	protein_coding	small integral membrane protein 1
known_NIR_13406	chr4	154108274;154108807	154108524;154109961	-	154108274	154109961	cassetteExon	ENSMUST00000125533.9	known	0.50	4.0	4	8;0	4	n	0.04	0.5	12	1;0	12	n	0.00	0.0	2	0;0	2	n	0.45	2.5	3	4;1	3	n	0.08	1.0	12	0;2	12	n	0.14	0.5	3	1;0	3	n	0.06	1.0	15	0;2	15	n	0.14	0.5	3	0;1	3	n	0.33	2.5	5	1;4	5	n	0.12	2.0	15	4;0	15	n	0.38	5.0	8	3;7	8	y	0.33	1.5	3	3;0	3	n	ENSMUSG00000078350.12	Smim1	chr4	protein_coding	small integral membrane protein 1
known_NIR_13407	chr4	154108348	154109961	-	154108348	154108524	A5SS	ENSMUST00000126119.8	known	0.94	16	1	16	1	n	1.00	14	0	14	0	n	1.00	2	0	2	0	n	0.57	4	3	4	3	n	0.94	16	1	16	1	n	0.89	8	1	8	1	n	0.84	16	3	16	3	y	1.00	7	0	7	0	n	0.75	6	2	6	2	n	1.00	24	0	24	0	n	1.00	19	0	19	0	n	0.91	20	2	20	2	y	ENSMUSG00000078350.12	Smim1	chr4	protein_coding	small integral membrane protein 1
known_NIR_13408	chr4	154108348;154108807	154108524;154109961	-	154108348	154109961	cassetteExon	ENSMUST00000182191.8	known	0.03	0.5	16	1;0	16	n	0.00	0.0	14	0;0	14	n	0.00	0.0	2	0;0	2	n	0.33	2.0	4	3;1	4	n	0.09	1.5	16	1;2	16	n	0.06	0.5	8	1;0	8	n	0.14	2.5	16	3;2	16	y	0.07	0.5	7	0;1	7	n	0.33	3.0	6	2;4	6	y	0.00	0.0	24	0;0	24	n	0.16	3.5	19	0;7	19	n	0.05	1.0	20	2;0	20	n	ENSMUSG00000078350.12	Smim1	chr4	protein_coding	small integral membrane protein 1
known_NIR_13409	chr4	154110078	154110314	-	154110078	154110366	A5SS	ENSMUST00000143047.8	known	0.11	1	8	1	8	n	0.00	0	18	0	18	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.15	3	17	3	17	y	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.14	2	12	2	12	y	0.00	0	19	0	19	n	ENSMUSG00000078350.12	Smim1	chr4	protein_coding	small integral membrane protein 1
known_NIR_13410	chr4	154243022	154244542	-	154243022	154243726	A5SS&ES	ENSMUST00000136374.2	known	0.04	7	161	7	161	y	0.01	1	102	1	102	n	0.02	3	139	3	139	y	0.01	1	128	1	128	n	0.02	3	169	3	169	y	0.02	2	102	2	102	y	0.02	3	190	3	190	y	0.00	0	104	0	104	n	0.02	2	129	2	129	y	0.02	3	189	3	189	y	0.03	3	112	3	112	y	0.00	0	154	0	154	n	ENSMUSG00000029030.15	Tprgl	chr4	protein_coding	transformation related protein 63 regulated like
known_NIR_13411	chr4	154243022	154244542	-	154243022;154243879	154243726;154244542	ES	ENSMUST00000030896.15	known	0.05	7	128.5	7	161;96	y	0.01	1	94.5	1	102;87	n	0.02	3	119.5	3	139;100	y	0.01	1	110.0	1	128;92	n	0.02	3	158.5	3	169;148	y	0.02	2	84.0	2	102;66	y	0.02	3	184.5	3	190;179	y	0.00	0	85.5	0	104;67	n	0.02	2	125.5	2	129;122	y	0.02	3	158.0	3	189;127	y	0.03	3	107.5	3	112;103	y	0.00	0	127.5	0	154;101	n	ENSMUSG00000029030.15	Tprgl	chr4	protein_coding	transformation related protein 63 regulated like
known_NIR_13412	chr4	154243879	154244498	-	154243879	154244542	A5SS	ENSMUST00000030896.15	known	0.00	0	96	0	96	n	0.02	2	87	2	87	y	0.03	3	100	3	100	y	0.00	0	92	0	92	n	0.03	4	148	4	148	y	0.01	1	66	1	66	n	0.02	3	179	3	179	y	0.00	0	67	0	67	n	0.02	2	122	2	122	y	0.02	3	127	3	127	y	0.01	1	103	1	103	n	0.01	1	101	1	101	n	ENSMUSG00000029030.15	Tprgl	chr4	protein_coding	transformation related protein 63 regulated like
known_NIR_13413	chr4	154376010	154384282	-	154376010;154377399	154377289;154384282	ES	ENSMUST00000144145.8	known	0.31	2	4.5	2	4;5	y	0.33	2	4.0	2	4;4	y	0.00	0	0.5	0	0;1	n	0.00	0	4.5	0	5;4	n	0.33	1	2.0	1	2;2	n	0.00	0	1.5	0	0;3	n	0.50	2	2.0	2	2;2	n	0.44	2	2.5	2	3;2	n	0.25	3	9.0	3	8;10	y	0.38	5	8.0	5	9;7	y	0.20	2	8.0	2	7;9	y	0.00	0	0.5	0	1;0	n	ENSMUSG00000029032.13	Arhgef16	chr4	protein_coding	Rho guanine nucleotide exchange factor (GEF) 16
known_NIR_13414	chr4	155006781	155006937	-	155006784	155006937	A3SS	ENSMUST00000219534.3	known	0.24	5	16	5	16	y	0.29	4	10	4	10	y	0.22	2	7	2	7	n	0.42	11	15	11	15	y	0.35	13	24	13	24	y	0.14	1	6	1	6	n	0.31	10	22	10	22	y	0.27	7	19	7	19	y	0.45	9	11	9	11	y	0.34	13	25	13	25	y	0.50	7	7	7	7	y	0.06	2	30	2	30	y	ENSMUSG00000042333.17	Tnfrsf14	chr4	protein_coding	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)
known_NIR_13415	chr4	155009875	155011056	-	155009875	155012435	A5SS	ENSMUST00000152687.8	known	1.00	7	0	7	0	n	1.00	10	0	10	0	n	1.00	8	0	8	0	n	1.00	27	0	27	0	n	1.00	39	0	39	0	n	1.00	5	0	5	0	n	0.97	29	1	29	1	n	1.00	11	0	11	0	n	1.00	9	0	9	0	n	0.92	22	2	22	2	y	1.00	10	0	10	0	n	1.00	20	0	20	0	n	ENSMUSG00000042333.17	Tnfrsf14	chr4	protein_coding	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)
known_NIR_13416	chr4	155011704	155012435	-	155009875	155012435	A3SS	ENSMUST00000152687.8	known	1.00	9	0	9	0	n	1.00	9	0	9	0	n	1.00	7	0	7	0	n	1.00	20	0	20	0	n	1.00	16	0	16	0	n	1.00	10	0	10	0	n	0.95	20	1	20	1	n	1.00	12	0	12	0	n	1.00	21	0	21	0	n	0.91	20	2	20	2	y	1.00	15	0	15	0	n	1.00	23	0	23	0	n	ENSMUSG00000042333.17	Tnfrsf14	chr4	protein_coding	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)
known_NIR_13417	chr4	155062899	155063412	+	155062899	155063378	A3SS	ENSMUST00000030931.11	known	0.27	7	19	7	19	y	0.52	16	15	16	15	y	0.43	9	12	9	12	y	0.39	11	17	11	17	y	0.25	7	21	7	21	y	0.44	8	10	8	10	y	0.52	16	15	16	15	y	0.38	6	10	6	10	y	0.38	6	10	6	10	y	0.54	13	11	13	11	y	0.33	10	20	10	20	y	0.27	7	19	7	19	y	ENSMUSG00000029056.14	Pank4	chr4	protein_coding	pantothenate kinase 4
known_NIR_13418	chr4	155151701	155152280	+	155151631	155152280	A5SS	ENSMUST00000103180.4	known	0.28	5	13	5	13	y	0.15	2	11	2	11	y	0.30	3	7	3	7	y	0.25	6	18	6	18	y	0.19	4	17	4	17	y	0.29	2	5	2	5	n	0.00	0	17	0	17	n	0.17	1	5	1	5	n	0.38	3	5	3	5	n	0.19	4	17	4	17	y	0.10	1	9	1	9	n	0.21	3	11	3	11	y	ENSMUSG00000029047.14	Pex10	chr4	protein_coding	peroxisomal biogenesis factor 10
known_NIR_13419	chr4	155167211	155170662	-	155167211;155167774	155167566;155170662	ES	ENSMUST00000149796.2	known	0.86	285	46.0	285	67;25	y	0.83	219	43.5	219	44;43	y	0.74	273	96.0	273	120;72	y	0.82	276	59.0	276	76;42	y	0.77	344	105.0	344	136;74	y	0.77	176	51.5	176	66;37	y	0.78	292	83.0	292	115;51	y	0.79	186	49.0	186	56;42	y	0.81	197	47.0	197	51;43	y	0.83	332	67.0	332	87;47	y	0.85	268	48.5	268	57;40	y	0.83	255	54.0	255	58;50	y	ENSMUSG00000029048.4	Rer1	chr4	protein_coding	retention in endoplasmic reticulum sorting receptor 1
known_NIR_13420	chr4	155167211;155167693	155167566;155170662	-	155167211	155170662	cassetteExon	ENSMUST00000030914.4	known	0.11	37.0	285	67;7	285	y	0.11	27.0	219	44;10	219	y	0.20	70.0	273	120;20	273	y	0.14	45.5	276	76;15	276	y	0.19	82.0	344	136;28	344	y	0.20	44.0	176	66;22	176	y	0.18	62.0	292	115;9	292	y	0.14	30.5	186	56;5	186	y	0.13	30.5	197	51;10	197	y	0.14	53.0	332	87;19	332	y	0.11	32.5	268	57;8	268	y	0.12	33.5	255	58;9	255	y	ENSMUSG00000029048.4	Rer1	chr4	protein_coding	retention in endoplasmic reticulum sorting receptor 1
known_NIR_13421	chr4	155167693	155170662	-	155167774	155170662	A3SS	ENSMUST00000149796.2	known	0.22	7	25	7	25	y	0.19	10	43	10	43	y	0.22	20	72	20	72	y	0.26	15	42	15	42	y	0.27	28	74	28	74	y	0.37	22	37	22	37	y	0.15	9	51	9	51	y	0.11	5	42	5	42	y	0.19	10	43	10	43	y	0.29	19	47	19	47	y	0.17	8	40	8	40	y	0.15	9	50	9	50	y	ENSMUSG00000029048.4	Rer1	chr4	protein_coding	retention in endoplasmic reticulum sorting receptor 1
known_NIR_13422	chr4	155196046	155213140	+	155196046	155213136	A3SS	ENSMUST00000030915.11	known	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.33	2	4	2	4	n	0.17	2	10	2	10	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	ENSMUSG00000029049.15	Morn1	chr4	protein_coding	MORN repeat containing 1
known_NIR_13423	chr4	155334519	155334963	+	155334420	155334963	A5SS	ENSMUST00000126713.2	known	0.93	27	2	27	2	y	1.00	29	0	29	0	n	1.00	37	0	37	0	n	0.97	29	1	29	1	n	0.97	37	1	37	1	n	0.94	16	1	16	1	n	0.96	27	1	27	1	n	1.00	17	0	17	0	n	1.00	17	0	17	0	n	0.92	24	2	24	2	y	0.94	17	1	17	1	n	1.00	22	0	22	0	n	ENSMUSG00000073684.14	Faap20	chr4	protein_coding	Fanconi anemia core complex associated protein 20
known_NIR_13424	chr4	155334519	155335002	+	155334519	155334963	A3SS	ENSMUST00000178473.8	known	0.07	2	27	2	27	y	0.15	5	29	5	29	y	0.21	10	37	10	37	y	0.00	0	29	0	29	n	0.21	10	37	10	37	y	0.33	8	16	8	16	y	0.13	4	27	4	27	y	0.00	0	17	0	17	n	0.23	5	17	5	17	y	0.17	5	24	5	24	y	0.00	0	17	0	17	n	0.12	3	22	3	22	y	ENSMUSG00000073684.14	Faap20	chr4	protein_coding	Fanconi anemia core complex associated protein 20
known_NIR_13425	chr4	155576037	155611870	+	155576037;155600136	155600088;155611870	ES	ENSMUST00000165335.8	known	0.21	14	52.5	14	36;69	y	0.30	15	35.0	15	23;47	y	0.55	79	65.5	79	46;85	y	0.34	30	57.5	30	48;67	y	0.40	53	80.0	53	52;108	y	0.35	27	49.5	27	42;57	y	0.39	46	71.5	46	53;90	y	0.42	36	50.5	36	42;59	y	0.41	23	33.0	23	22;44	y	0.23	22	72.0	22	54;90	y	0.38	30	48.0	30	31;65	y	0.29	29	72.0	29	55;89	y	ENSMUSG00000029064.16	Gnb1	chr4	protein_coding	guanine nucleotide binding protein (G protein), beta 1
known_NIR_13426	chr4	155641743	155641928	+	155641743	155641925	A3SS	ENSMUST00000165335.8	known	0.79	174	46	174	46	y	0.73	172	65	172	65	y	0.74	222	78	222	78	y	0.68	142	66	142	66	y	0.73	198	73	198	73	y	0.77	133	40	133	40	y	0.75	237	79	237	79	y	0.73	116	43	116	43	y	0.81	151	35	151	35	y	0.75	188	64	188	64	y	0.76	184	58	184	58	y	0.75	191	62	191	62	y	ENSMUSG00000029064.16	Gnb1	chr4	protein_coding	guanine nucleotide binding protein (G protein), beta 1
known_NIR_13427	chr4	155648436	155661450	+	155646912	155661450	A5SS	ENSMUST00000030939.14	known	0.97	139	4	139	4	y	1.00	118	0	118	0	n	0.93	116	9	116	9	y	0.99	220	2	220	2	y	0.98	218	5	218	5	y	0.94	82	5	82	5	y	1.00	173	0	173	0	n	0.97	86	3	86	3	y	0.99	120	1	120	1	n	1.00	197	0	197	0	n	0.99	141	2	141	2	y	1.00	208	0	208	0	n	ENSMUSG00000029063.17	Nadk	chr4	protein_coding	NAD kinase
known_NIR_13428	chr4	155648436	155661450	+	155648436	155661185	A3SS	ENSMUST00000147062.2	known	0.93	139	11	139	11	y	0.92	118	10	118	10	y	0.87	116	17	116	17	y	0.94	220	15	220	15	y	0.89	218	28	218	28	y	0.89	82	10	82	10	y	0.89	173	21	173	21	y	0.91	86	9	86	9	y	0.88	120	16	120	16	y	0.87	197	30	197	30	y	0.91	141	14	141	14	y	0.94	208	13	208	13	y	ENSMUSG00000029063.17	Nadk	chr4	protein_coding	NAD kinase
known_NIR_13429	chr4	155648436;155661239	155661185;155661450	+	155648436	155661450	cassetteExon	ENSMUST00000105613.10	known	0.09	13.0	139	11;15	139	y	0.08	10.0	118	10;10	118	y	0.11	14.0	116	17;11	116	y	0.06	13.5	220	15;12	220	y	0.08	19.0	218	28;10	218	y	0.06	5.0	82	10;0	82	n	0.07	13.5	173	21;6	173	y	0.09	8.0	86	9;7	86	y	0.09	11.5	120	16;7	120	y	0.10	21.0	197	30;12	197	y	0.08	11.5	141	14;9	141	y	0.07	15.0	208	13;17	208	y	ENSMUSG00000029063.17	Nadk	chr4	protein_coding	NAD kinase
known_NIR_13430	chr4	155648436;155661347	155661185;155661450	+	155648436	155661450	cassetteExon	ENSMUST00000105613.10	known	0.05	8.0	139	11;5	139	y	0.05	6.0	118	10;2	118	y	0.11	14.0	116	17;11	116	y	0.04	8.0	220	15;1	220	n	0.07	17.0	218	28;6	218	y	0.07	6.0	82	10;2	82	y	0.06	12.0	173	21;3	173	y	0.05	5.0	86	9;1	86	n	0.08	10.5	120	16;5	120	y	0.08	17.0	197	30;4	197	y	0.05	7.0	141	14;0	141	n	0.03	7.5	208	13;2	208	y	ENSMUSG00000029063.17	Nadk	chr4	protein_coding	NAD kinase
known_NIR_13431	chr4	155661239	155661450	+	155646912	155661450	A5SS	ENSMUST00000030939.14	known	0.79	15	4	15	4	y	1.00	10	0	10	0	n	0.55	11	9	11	9	y	0.86	12	2	12	2	y	0.67	10	5	10	5	y	0.00	0	5	0	5	n	1.00	6	0	6	0	n	0.70	7	3	7	3	y	0.88	7	1	7	1	n	1.00	12	0	12	0	n	0.82	9	2	9	2	y	1.00	17	0	17	0	n	ENSMUSG00000029063.17	Nadk	chr4	protein_coding	NAD kinase
known_NIR_13432	chr4	155661239	155661450	+	155661347	155661450	A5SS	ENSMUST00000143840.2	known	0.75	15	5	15	5	y	0.83	10	2	10	2	y	0.50	11	11	11	11	y	0.92	12	1	12	1	n	0.62	10	6	10	6	y	0.00	0	2	0	2	n	0.67	6	3	6	3	n	0.88	7	1	7	1	n	0.58	7	5	7	5	y	0.75	12	4	12	4	y	1.00	9	0	9	0	n	0.89	17	2	17	2	y	ENSMUSG00000029063.17	Nadk	chr4	protein_coding	NAD kinase
known_NIR_13433	chr4	155661347	155661450	+	155646912	155661450	A5SS	ENSMUST00000030939.14	known	0.56	5	4	5	4	n	1.00	2	0	2	0	n	0.55	11	9	11	9	y	0.33	1	2	1	2	n	0.55	6	5	6	5	y	0.29	2	5	2	5	n	1.00	3	0	3	0	n	0.25	1	3	1	3	n	0.83	5	1	5	1	n	1.00	4	0	4	0	n	0.00	0	2	0	2	n	1.00	2	0	2	0	n	ENSMUSG00000029063.17	Nadk	chr4	protein_coding	NAD kinase
known_NIR_13434	chr4	155667105	155668594	+	155663851	155668594	A5SS	ENSMUST00000030939.14	known	0.00	0	315	0	315	n	0.00	0	247	0	247	n	0.00	1	211	1	211	n	0.01	3	390	3	390	y	0.00	0	433	0	433	n	0.00	0	146	0	146	n	0.00	0	361	0	361	n	0.00	0	169	0	169	n	0.01	3	204	3	204	y	0.00	0	380	0	380	n	0.00	0	281	0	281	n	0.00	0	420	0	420	n	ENSMUSG00000029063.17	Nadk	chr4	protein_coding	NAD kinase
known_NIR_13435	chr4	155672241	155673067	+	155672241;155672475	155672318;155673067	ES	ENSMUST00000030939.14	known	0.06	20	340.5	20	296;385	y	0.05	15	273.0	15	242;304	y	0.01	2	252.0	2	244;260	y	0.04	14	374.5	14	348;401	y	0.01	3	398.5	3	380;417	y	0.00	0	135.0	0	124;146	n	0.02	8	346.5	8	319;374	y	0.00	0	168.5	0	169;168	n	0.03	7	251.5	7	249;254	y	0.02	7	420.5	7	383;458	y	0.01	4	331.0	4	313;349	y	0.03	11	396.5	11	346;447	y	ENSMUSG00000029063.17	Nadk	chr4	protein_coding	NAD kinase
known_NIR_13436	chr4	155686619	155694296	+	155686195	155694296	A5SS	ENSMUST00000105608.9	known	1.00	18	0	18	0	n	0.82	9	2	9	2	y	0.80	8	2	8	2	y	0.97	28	1	28	1	n	1.00	29	0	29	0	n	0.67	6	3	6	3	n	1.00	24	0	24	0	n	0.89	16	2	16	2	y	0.94	17	1	17	1	n	0.89	33	4	33	4	y	0.92	11	1	11	1	n	0.86	12	2	12	2	y	ENSMUSG00000042202.16	Slc35e2	chr4	protein_coding	solute carrier family 35, member E2
known_NIR_13437	chr4	155686619	155694296	+	155686259	155694296	A5SS	ENSMUST00000043829.11	known	1.00	18	0	18	0	n	1.00	9	0	9	0	n	1.00	8	0	8	0	n	1.00	28	0	28	0	n	1.00	29	0	29	0	n	1.00	6	0	6	0	n	1.00	24	0	24	0	n	0.89	16	2	16	2	y	1.00	17	0	17	0	n	1.00	33	0	33	0	n	1.00	11	0	11	0	n	0.86	12	2	12	2	y	ENSMUSG00000042202.16	Slc35e2	chr4	protein_coding	solute carrier family 35, member E2
known_NIR_13438	chr4	155709398	155709988	+	155709398;155709796	155709642;155709988	ES	ENSMUST00000135550.8	known	0.33	9	18.0	9	12;24	y	0.49	10	10.5	10	9;12	y	0.48	24	25.5	24	12;39	y	0.51	16	15.5	16	5;26	y	0.50	26	25.5	26	11;40	y	0.45	14	17.0	14	13;21	y	0.55	32	26.0	32	12;40	y	0.50	10	10.0	10	8;12	y	0.46	8	9.5	8	3;16	y	0.26	10	28.0	10	12;44	y	0.40	5	7.5	5	2;13	y	0.42	19	26.0	19	15;37	y	ENSMUSG00000029062.15	Cdk11b	chr4	protein_coding	cyclin-dependent kinase 11B
known_NIR_13439	chr4	155710111	155711231	+	155710111;155710230	155710184;155711231	ES	ENSMUST00000135550.8	known	0.64	24	13.5	24	13;14	y	0.48	15	16.5	15	5;28	y	0.57	44	33.5	44	17;50	y	0.62	35	21.5	35	10;33	y	0.64	42	23.5	42	10;37	y	0.49	15	15.5	15	10;21	y	0.50	41	40.5	41	26;55	y	0.80	24	6.0	24	5;7	y	0.50	17	17.0	17	8;26	y	0.60	26	17.5	26	5;30	y	0.59	21	14.5	21	8;21	y	0.44	21	27.0	21	15;39	y	ENSMUSG00000029062.15	Cdk11b	chr4	protein_coding	cyclin-dependent kinase 11B
known_NIR_13440	chr4	155710111	155711231	+	155710230	155711231	A5SS	ENSMUST00000105598.2	known	0.63	24	14	24	14	y	0.35	15	28	15	28	y	0.47	44	50	44	50	y	0.51	35	33	35	33	y	0.53	42	37	42	37	y	0.42	15	21	15	21	y	0.43	41	55	41	55	y	0.77	24	7	24	7	y	0.40	17	26	17	26	y	0.46	26	30	26	30	y	0.50	21	21	21	21	y	0.35	21	39	21	39	y	ENSMUSG00000029062.15	Cdk11b	chr4	protein_coding	cyclin-dependent kinase 11B
known_NIR_13441	chr4	155732424	155732682	+	155732424	155732740	A3SS	ENSMUST00000067081.10	known	0.04	3	70	3	70	y	0.05	4	74	4	74	y	0.03	3	89	3	89	y	0.07	5	71	5	71	y	0.01	1	108	1	108	n	0.02	1	51	1	51	n	0.06	6	93	6	93	y	0.02	1	55	1	55	n	0.00	0	72	0	72	n	0.06	5	75	5	75	y	0.04	3	82	3	82	y	0.05	5	90	5	90	y	ENSMUSG00000029062.15	Cdk11b	chr4	protein_coding	cyclin-dependent kinase 11B
known_NIR_13442	chr4	155739896	155739979	-	155739727	155739979	A3SS	ENSMUST00000128204.8	known	0.91	40	4	40	4	y	1.00	23	0	23	0	n	1.00	28	0	28	0	n	1.00	38	0	38	0	n	0.98	46	1	46	1	n	1.00	17	0	17	0	n	1.00	43	0	43	0	n	1.00	17	0	17	0	n	1.00	32	0	32	0	n	1.00	56	0	56	0	n	0.94	33	2	33	2	y	1.00	28	0	28	0	n	ENSMUSG00000029060.18	Mib2	chr4	protein_coding	mindbomb E3 ubiquitin protein ligase 2
known_NIR_13443	chr4	155742416	155743580	-	155742416	155743351	A5SS	ENSMUST00000151843.8	known	0.16	4	21	4	21	y	0.31	8	18	8	18	y	0.07	3	37	3	37	y	0.18	6	28	6	28	y	0.12	5	36	5	36	y	0.19	3	13	3	13	y	0.13	5	33	5	33	y	0.23	5	17	5	17	y	0.11	3	24	3	24	y	0.21	10	37	10	37	y	0.09	3	32	3	32	y	0.13	4	26	4	26	y	ENSMUSG00000029060.18	Mib2	chr4	protein_coding	mindbomb E3 ubiquitin protein ligase 2
known_NIR_13444	chr4	155742416;155743458	155743351;155743580	-	155742416	155743580	cassetteExon	ENSMUST00000103176.10	known	0.80	16.5	4	21;12	4	y	0.67	16.5	8	18;15	8	y	0.90	26.5	3	37;16	3	y	0.76	19.0	6	28;10	6	y	0.83	25.0	5	36;14	5	y	0.76	9.5	3	13;6	3	y	0.81	21.5	5	33;10	5	y	0.71	12.0	5	17;7	5	y	0.81	12.5	3	24;1	3	n	0.72	26.0	10	37;15	10	y	0.88	22.0	3	32;12	3	y	0.83	20.0	4	26;14	4	y	ENSMUSG00000029060.18	Mib2	chr4	protein_coding	mindbomb E3 ubiquitin protein ligase 2
known_NIR_13445	chr4	155888199	155891365	+	155888199;155888400	155888290;155891365	ES	ENSMUST00000030942.13	known	0.00	0	323.5	0	271;376	n	0.00	0	331.5	0	301;362	n	0.00	0	384.0	0	340;428	n	0.01	2	292.0	2	261;323	y	0.01	7	461.0	7	410;512	y	0.00	0	256.0	0	239;273	n	0.00	2	419.0	2	385;453	y	0.00	1	225.0	1	187;263	n	0.00	0	271.5	0	224;319	n	0.00	1	428.0	1	381;475	n	0.00	0	343.0	0	297;389	n	0.01	4	315.5	4	262;369	y	ENSMUSG00000029066.13	Mrpl20	chr4	protein_coding	mitochondrial ribosomal protein L20
known_NIR_13446	chr4	155888199	155891365	+	155888400	155891365	5pMXE	ENSMUST00000143503.2	known	0.00	0	376	0	376	n	0.00	0	362	0	362	n	0.00	0	428	0	428	n	0.01	2	323	2	323	y	0.01	7	512	7	512	y	0.00	0	273	0	273	n	0.00	2	453	2	453	y	0.00	1	263	1	263	n	0.00	0	319	0	319	n	0.00	1	475	1	475	n	0.00	0	389	0	389	n	0.01	4	369	4	369	y	ENSMUSG00000029066.13	Mrpl20	chr4	protein_coding	mitochondrial ribosomal protein L20
known_NIR_13447	chr4	155902444	155904786	+	155902444	155902996	A3SS	ENSMUST00000139066.8	known	0.12	16	120	16	120	y	0.09	10	99	10	99	y	0.05	11	210	11	210	y	0.07	9	122	9	122	y	0.09	20	198	20	198	y	0.08	11	133	11	133	y	0.05	9	159	9	159	y	0.07	9	128	9	128	y	0.13	16	107	16	107	y	0.03	5	152	5	152	y	0.11	14	111	14	111	y	0.08	12	130	12	130	y	ENSMUSG00000029068.17	Ccnl2	chr4	protein_coding	cyclin L2
known_NIR_13448	chr4	155902444;155903121	155902996;155904786	+	155902444	155904786	cassetteExon	ENSMUST00000030944.11	known	0.79	60.0	16	120;0	16	n	0.84	51.0	10	99;3	10	y	0.91	107.5	11	210;5	11	y	0.88	63.0	9	122;4	9	y	0.83	100.5	20	198;3	20	y	0.86	68.5	11	133;4	11	y	0.90	81.5	9	159;4	9	y	0.88	65.5	9	128;3	9	y	0.77	53.5	16	107;0	16	n	0.94	78.0	5	152;4	5	y	0.80	56.5	14	111;2	14	y	0.85	66.0	12	130;2	12	y	ENSMUSG00000029068.17	Ccnl2	chr4	protein_coding	cyclin L2
known_NIR_13449	chr4	155916192	155916350	+	155916192	155916440	A3SS	ENSMUST00000084097.12	known	0.02	3	179	3	179	y	0.01	2	147	2	147	y	0.00	0	122	0	122	n	0.01	1	148	1	148	n	0.02	4	182	4	182	y	0.02	2	111	2	111	y	0.00	0	171	0	171	n	0.05	4	84	4	84	y	0.01	2	142	2	142	y	0.00	1	231	1	231	n	0.01	2	164	2	164	y	0.01	2	184	2	184	y	ENSMUSG00000065990.13	Aurkaip1	chr4	protein_coding	aurora kinase A interacting protein 1
known_NIR_13450	chr4	155916223	155916440	+	155916192	155916440	A5SS	ENSMUST00000084097.12	known	0.05	9	179	9	179	y	0.06	10	147	10	147	y	0.09	12	122	12	122	y	0.06	10	148	10	148	y	0.10	20	182	20	182	y	0.10	13	111	13	111	y	0.09	16	171	16	171	y	0.09	8	84	8	84	y	0.10	16	142	16	142	y	0.06	14	231	14	231	y	0.07	12	164	12	164	y	0.08	17	184	17	184	y	ENSMUSG00000065990.13	Aurkaip1	chr4	protein_coding	aurora kinase A interacting protein 1
known_NIR_13451	chr4	155925255	155925363	+	155925255	155925372	A3SS	ENSMUST00000141883.8	known	0.83	5	1	5	1	n	1.00	1	0	1	0	n	0.83	5	1	5	1	n	0.33	1	2	1	2	n	0.80	4	1	4	1	n	0.67	2	1	2	1	n	0.73	11	4	11	4	y	1.00	2	0	2	0	n	0.75	3	1	3	1	n	-	-	-	-	-	-	0.20	1	4	1	4	n	0.67	6	3	6	3	n	ENSMUSG00000029070.10	Mxra8	chr4	protein_coding	matrix-remodelling associated 8
known_NIR_13452	chr4	155940001	155940589	+	155940076	155940589	A5SS	ENSMUST00000030948.16	known	0.04	5	127	5	127	y	0.03	4	115	4	115	y	0.10	12	110	12	110	y	0.02	3	127	3	127	y	0.04	7	181	7	181	y	0.09	7	71	7	71	y	0.10	16	147	16	147	y	0.07	5	66	5	66	y	0.04	4	109	4	109	y	0.09	15	144	15	144	y	0.07	8	107	8	107	y	0.04	5	111	5	111	y	ENSMUSG00000029071.17	Dvl1	chr4	protein_coding	dishevelled segment polarity protein 1
known_NIR_13453	chr4	155941277	155942450	+	155941991	155942450	A5SS&ES	ENSMUST00000133184.8	known	0.98	126	3	126	3	y	1.00	115	0	115	0	n	1.00	119	0	119	0	n	0.99	107	1	107	1	n	1.00	139	0	139	0	n	1.00	68	0	68	0	n	1.00	129	0	129	0	n	0.99	89	1	89	1	n	1.00	98	0	98	0	n	0.99	150	1	150	1	n	1.00	101	0	101	0	n	0.98	111	2	111	2	y	ENSMUSG00000029071.17	Dvl1	chr4	protein_coding	dishevelled segment polarity protein 1
known_NIR_13454	chr4	155957380	155959686	+	155957380	155959595	A3SS	ENSMUST00000120794.8	known	0.00	0	32	0	32	n	0.00	0	23	0	23	n	0.02	1	42	1	42	n	0.00	0	18	0	18	n	0.11	6	51	6	51	y	0.08	1	12	1	12	n	0.11	4	33	4	33	y	0.15	4	23	4	23	y	0.05	1	21	1	21	n	0.11	4	34	4	34	y	0.00	0	32	0	32	n	0.07	3	38	3	38	y	ENSMUSG00000029034.10	Ints11	chr4	protein_coding	integrator complex subunit 11
known_NIR_13455	chr4	155957380	155969555	+	155957380	155959595	A3SS&ES	ENSMUST00000120794.8	known	0.00	0	32	0	32	n	0.04	1	23	1	23	n	0.02	1	42	1	42	n	0.00	0	18	0	18	n	0.00	0	51	0	51	n	0.20	3	12	3	12	y	0.06	2	33	2	33	y	0.12	3	23	3	23	y	0.00	0	21	0	21	n	0.11	4	34	4	34	y	0.03	1	32	1	32	n	0.05	2	38	2	38	y	ENSMUSG00000029034.10	Ints11	chr4	protein_coding	integrator complex subunit 11
known_NIR_13456	chr4	155957380;155959823	155959595;155969555	+	155957380	155969555	cassetteExon	ENSMUST00000134678.8	known	1.00	28.0	0	32;24	0	n	0.96	25.5	1	23;28	1	n	0.98	49.5	1	42;57	1	n	1.00	24.5	0	18;31	0	n	1.00	45.0	0	51;39	0	n	0.83	14.5	3	12;17	3	y	0.95	36.0	2	33;39	2	y	0.87	20.5	3	23;18	3	y	1.00	33.5	0	21;46	0	n	0.89	33.5	4	34;33	4	y	0.97	29.0	1	32;26	1	n	0.94	33.0	2	38;28	2	y	ENSMUSG00000029034.10	Ints11	chr4	protein_coding	integrator complex subunit 11
known_NIR_13457	chr4	155957380;155959823	155959686;155969555	+	155957380	155969555	cassetteExon	ENSMUST00000134678.8	known	1.00	12.0	0	0;24	0	n	0.93	14.0	1	0;28	1	n	0.97	29.0	1	1;57	1	n	1.00	15.5	0	0;31	0	n	1.00	22.5	0	6;39	0	n	0.75	9.0	3	1;17	3	n	0.91	21.5	2	4;39	2	y	0.79	11.0	3	4;18	3	y	1.00	23.5	0	1;46	0	n	0.82	18.5	4	4;33	4	y	0.93	13.0	1	0;26	1	n	0.89	15.5	2	3;28	2	y	ENSMUSG00000029034.10	Ints11	chr4	protein_coding	integrator complex subunit 11
known_NIR_13458	chr4	155975872	155976029	-	155975872	155976088	A5SS	ENSMUST00000097737.5	known	0.00	0	5	0	5	n	0.10	1	9	1	9	n	0.00	0	10	0	10	n	0.17	1	5	1	5	n	0.20	3	12	3	12	y	0.33	1	2	1	2	n	0.08	1	12	1	12	n	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.04	1	26	1	26	n	0.00	0	12	0	12	n	0.20	2	8	2	8	y	ENSMUSG00000051557.16	Pusl1	chr4	protein_coding	pseudouridylate synthase-like 1
known_NIR_13459	chr4	156028470	156028997	+	156028470	156033464	A3SS	ENSMUST00000103175.8	known	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.10	2	19	2	19	y	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	ENSMUSG00000023286.17	Ube2j2	chr4	protein_coding	ubiquitin-conjugating enzyme E2J 2
known_NIR_13460	chr4	156028470	156030712	+	156028470;156029091	156028997;156030712	ES	ENSMUST00000150846.8	known	0.98	21	0.5	21	0;1	n	0.97	15	0.5	15	0;1	n	0.91	26	2.5	26	2;3	y	1.00	16	0.0	16	0;0	n	1.00	29	0.0	29	0;0	n	1.00	8	0.0	8	0;0	n	0.95	21	1.0	21	0;2	n	1.00	15	0.0	15	0;0	n	0.96	13	0.5	13	0;1	n	1.00	22	0.0	22	0;0	n	1.00	23	0.0	23	0;0	n	1.00	28	0.0	28	0;0	n	ENSMUSG00000023286.17	Ube2j2	chr4	protein_coding	ubiquitin-conjugating enzyme E2J 2
known_NIR_13461	chr4	156028470	156030712	+	156028607	156030712	A5SS	ENSMUST00000024056.10	known	0.36	21	38	21	38	y	0.37	15	26	15	26	y	0.28	26	67	26	67	y	0.31	16	36	16	36	y	0.28	29	74	29	74	y	0.22	8	29	8	29	y	0.33	21	42	21	42	y	0.32	15	32	15	32	y	0.32	13	28	13	28	y	0.28	22	57	22	57	y	0.36	23	41	23	41	y	0.41	28	40	28	40	y	ENSMUSG00000023286.17	Ube2j2	chr4	protein_coding	ubiquitin-conjugating enzyme E2J 2
known_NIR_13462	chr4	156028470	156033464	+	156030874	156033464	A5SS&ES	ENSMUST00000024056.10	known	0.10	10	87	10	87	y	0.14	11	65	11	65	y	0.11	19	153	19	153	y	0.10	8	69	8	69	y	0.07	10	128	10	128	y	0.15	13	72	13	72	y	0.07	8	105	8	105	y	0.14	7	43	7	43	y	0.04	3	72	3	72	y	0.10	11	101	11	101	y	0.07	8	103	8	103	y	0.07	8	115	8	115	y	ENSMUSG00000023286.17	Ube2j2	chr4	protein_coding	ubiquitin-conjugating enzyme E2J 2
known_NIR_13463	chr4	156028470;156030874	156030712;156033464	+	156028470	156033464	cassetteExon	ENSMUST00000103175.8	known	0.84	54.0	10	21;87	10	y	0.78	40.0	11	15;65	11	y	0.82	89.5	19	26;153	19	y	0.84	42.5	8	16;69	8	y	0.89	78.5	10	29;128	10	y	0.75	40.0	13	8;72	13	y	0.89	63.0	8	21;105	8	y	0.81	29.0	7	15;43	7	y	0.93	42.5	3	13;72	3	y	0.85	61.5	11	22;101	11	y	0.89	63.0	8	23;103	8	y	0.90	71.5	8	28;115	8	y	ENSMUSG00000023286.17	Ube2j2	chr4	protein_coding	ubiquitin-conjugating enzyme E2J 2
known_NIR_13464	chr4	156028607	156033464	+	156028470	156033464	A5SS	ENSMUST00000103175.8	known	0.50	10	10	10	10	y	0.52	12	11	12	11	y	0.51	20	19	20	19	y	0.67	16	8	16	8	y	0.63	17	10	17	10	y	0.54	15	13	15	13	y	0.53	9	8	9	8	y	0.56	9	7	9	7	y	0.80	12	3	12	3	y	0.56	14	11	14	11	y	0.60	12	8	12	8	y	0.62	13	8	13	8	y	ENSMUSG00000023286.17	Ube2j2	chr4	protein_coding	ubiquitin-conjugating enzyme E2J 2
known_NIR_13465	chr4	156028607	156033464	+	156030874	156033464	A5SS&ES	ENSMUST00000150846.8	known	0.10	10	87	10	87	y	0.16	12	65	12	65	y	0.12	20	153	20	153	y	0.19	16	69	16	69	y	0.12	17	128	17	128	y	0.17	15	72	15	72	y	0.08	9	105	9	105	y	0.17	9	43	9	43	y	0.14	12	72	12	72	y	0.12	14	101	14	101	y	0.10	12	103	12	103	y	0.10	13	115	13	115	y	ENSMUSG00000023286.17	Ube2j2	chr4	protein_coding	ubiquitin-conjugating enzyme E2J 2
known_NIR_13466	chr4	156028607;156030874	156030712;156033464	+	156028607	156033464	cassetteExon	ENSMUST00000166489.8	known	0.86	62.5	10	38;87	10	y	0.79	45.5	12	26;65	12	y	0.85	110.0	20	67;153	20	y	0.77	52.5	16	36;69	16	y	0.86	101.0	17	74;128	17	y	0.77	50.5	15	29;72	15	y	0.89	73.5	9	42;105	9	y	0.81	37.5	9	32;43	9	y	0.81	50.0	12	28;72	12	y	0.85	79.0	14	57;101	14	y	0.86	72.0	12	41;103	12	y	0.86	77.5	13	40;115	13	y	ENSMUSG00000023286.17	Ube2j2	chr4	protein_coding	ubiquitin-conjugating enzyme E2J 2
known_NIR_13467	chr4	156028716	156030712	+	156028470	156030712	A5SS	ENSMUST00000105583.9	known	0.00	0	21	0	21	n	0.00	0	15	0	15	n	0.04	1	26	1	26	n	0.00	0	16	0	16	n	0.00	0	29	0	29	n	0.00	0	8	0	8	n	0.00	0	21	0	21	n	0.12	2	15	2	15	y	0.00	0	13	0	13	n	0.04	1	22	1	22	n	0.00	0	23	0	23	n	0.00	0	28	0	28	n	ENSMUSG00000023286.17	Ube2j2	chr4	protein_coding	ubiquitin-conjugating enzyme E2J 2
known_NIR_13468	chr4	156028716	156030712	+	156028607	156030712	A5SS	ENSMUST00000024056.10	known	0.00	0	38	0	38	n	0.00	0	26	0	26	n	0.01	1	67	1	67	n	0.00	0	36	0	36	n	0.00	0	74	0	74	n	0.00	0	29	0	29	n	0.00	0	42	0	42	n	0.06	2	32	2	32	y	0.00	0	28	0	28	n	0.02	1	57	1	57	n	0.00	0	41	0	41	n	0.00	0	40	0	40	n	ENSMUSG00000023286.17	Ube2j2	chr4	protein_coding	ubiquitin-conjugating enzyme E2J 2
known_NIR_13469	chr4	156029091	156030712	+	156028607	156030712	A5SS	ENSMUST00000024056.10	known	0.03	1	38	1	38	n	0.04	1	26	1	26	n	0.04	3	67	3	67	y	0.00	0	36	0	36	n	0.00	0	74	0	74	n	0.00	0	29	0	29	n	0.05	2	42	2	42	y	0.00	0	32	0	32	n	0.03	1	28	1	28	n	0.00	0	57	0	57	n	0.00	0	41	0	41	n	0.00	0	40	0	40	n	ENSMUSG00000023286.17	Ube2j2	chr4	protein_coding	ubiquitin-conjugating enzyme E2J 2
known_NIR_13470	chr4	156040017	156041538	+	156040017	156040825	3pMXE	ENSMUST00000151892.2	known	0.00	0	100	0	100	n	0.00	0	102	0	102	n	0.00	0	149	0	149	n	0.00	0	96	0	96	n	0.01	1	172	1	172	n	0.00	0	59	0	59	n	0.01	2	144	2	144	y	0.00	0	61	0	61	n	0.00	0	66	0	66	n	0.00	0	127	0	127	n	0.00	0	93	0	93	n	0.00	0	132	0	132	n	ENSMUSG00000023286.17	Ube2j2	chr4	protein_coding	ubiquitin-conjugating enzyme E2J 2
known_NIR_13471	chr4	156040017	156041538	+	156040017;156040905	156040825;156041538	ES	ENSMUST00000103175.8	known	0.00	0	118.5	0	100;137	n	0.00	0	122.5	0	102;143	n	0.00	0	158.0	0	149;167	n	0.00	0	99.0	0	96;102	n	0.01	1	173.5	1	172;175	n	0.00	0	75.5	0	59;92	n	0.01	2	153.5	2	144;163	y	0.00	0	59.5	0	61;58	n	0.00	0	82.0	0	66;98	n	0.00	0	129.0	0	127;131	n	0.00	0	107.0	0	93;121	n	0.00	0	133.5	0	132;135	n	ENSMUSG00000023286.17	Ube2j2	chr4	protein_coding	ubiquitin-conjugating enzyme E2J 2
known_NIR_13472	chr4	156040017	156041538	+	156040905	156041538	5pMXE	ENSMUST00000124092.2	known	0.00	0	137	0	137	n	0.00	0	143	0	143	n	0.00	0	167	0	167	n	0.00	0	102	0	102	n	0.01	1	175	1	175	n	0.00	0	92	0	92	n	0.01	2	163	2	163	y	0.00	0	58	0	58	n	0.00	0	98	0	98	n	0.00	0	131	0	131	n	0.00	0	121	0	121	n	0.00	0	135	0	135	n	ENSMUSG00000023286.17	Ube2j2	chr4	protein_coding	ubiquitin-conjugating enzyme E2J 2
known_NIR_13473	chr4	156078026	156080646	+	156077791	156080646	A5SS	ENSMUST00000105579.8	known	0.12	30	212	30	212	y	0.12	26	189	26	189	y	0.08	27	316	27	316	y	0.15	41	234	41	234	y	0.10	44	396	44	396	y	0.06	14	209	14	209	y	0.11	45	369	45	369	y	0.08	17	203	17	203	y	0.07	14	195	14	195	y	0.09	37	364	37	364	y	0.13	41	264	41	264	y	0.15	46	266	46	266	y	ENSMUSG00000029076.15	Sdf4	chr4	protein_coding	stromal cell derived factor 4
known_NIR_13474	chr4	156253793;156254014	156254003;156254227	-	156253793	156254227	cassetteExon	ENSMUST00000105574.9	known	0.21	6.5	24	7;6	24	y	0.15	6.0	33	6;6	33	y	0.09	1.5	15	1;2	15	n	0.14	4.5	27	4;5	27	y	0.15	8.5	50	9;8	50	y	0.12	2.0	14	2;2	14	y	0.18	8.5	39	7;10	39	y	0.04	1.5	37	3;0	37	n	0.19	3.5	15	3;4	15	y	0.29	7.0	17	5;9	17	y	0.12	3.5	26	3;4	26	y	0.13	4.5	30	5;4	30	y	ENSMUSG00000041936.19	Agrn	chr4	protein_coding	agrin
known_NIR_13475	chr4	156269592	156279701	-	156269592	156270008	5pMXE	ENSMUST00000105574.9	known	1.00	13	0	13	0	n	1.00	5	0	5	0	n	1.00	15	0	15	0	n	1.00	24	0	24	0	n	1.00	21	0	21	0	n	1.00	12	0	12	0	n	1.00	24	0	24	0	n	1.00	25	0	25	0	n	1.00	15	0	15	0	n	1.00	34	0	34	0	n	1.00	16	0	16	0	n	0.93	26	2	26	2	y	ENSMUSG00000041936.19	Agrn	chr4	protein_coding	agrin
known_NIR_13476	chr4	156315143	156315371	-	156315143	156315358	A5SS	ENSMUST00000105569.5	known	0.00	0	8	0	8	n	0.38	3	5	3	5	n	0.17	1	5	1	5	n	0.08	1	11	1	11	n	0.25	6	18	6	18	y	0.38	3	5	3	5	n	0.00	0	10	0	10	n	0.20	1	4	1	4	n	0.08	1	12	1	12	n	0.00	0	20	0	20	n	0.38	5	8	5	8	y	0.36	4	7	4	7	y	ENSMUSG00002076083.1	Klhl17	chr4	protein_coding	--
known_NIR_13477	chr4	156317202	156317748	-	156317202	156317681	A5SS	ENSMUST00000105569.5	known	0.00	0	7	0	7	n	0.33	2	4	2	4	n	0.00	0	4	0	4	n	0.10	1	9	1	9	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.08	1	11	1	11	n	0.00	0	7	0	7	n	0.33	4	8	4	8	y	ENSMUSG00002076083.1	Klhl17	chr4	protein_coding	--
known_NIR_13478	chr4	15933095	15944463	-	15933095	15945283	A5SS	ENSMUST00000029877.9	known	0.00	2	467	2	467	y	0.00	0	430	0	430	n	0.00	2	871	2	871	y	0.00	1	709	1	709	n	0.00	4	964	4	964	y	0.01	7	477	7	477	y	0.00	5	1107	5	1107	y	0.01	6	582	6	582	y	0.01	3	504	3	504	y	0.00	4	1064	4	1064	y	0.00	0	716	0	716	n	0.00	0	510	0	510	n	ENSMUSG00000028223.9	Decr1	chr4	protein_coding	2,4-dienoyl CoA reductase 1, mitochondrial
known_NIR_13479	chr4	19605536	19608896	+	19605536	19606085	3pMXE	ENSMUST00000029888.4	known	0.00	0	114	0	114	n	0.00	0	114	0	114	n	0.00	0	65	0	65	n	0.00	0	105	0	105	n	0.00	0	138	0	138	n	0.00	0	46	0	46	n	0.00	0	141	0	141	n	0.00	0	54	0	54	n	0.00	0	118	0	118	n	0.01	2	168	2	168	y	0.00	0	133	0	133	n	0.00	0	129	0	129	n	ENSMUSG00000028229.12	Rmdn1	chr4	protein_coding	regulator of microtubule dynamics 1
known_NIR_13480	chr4	19719660	19720142	-	19719660	19719793	5pMXE	ENSMUST00000124319.8	known	1.00	2	0	2	0	n	0.73	8	3	8	3	y	1.00	1	0	1	0	n	1.00	6	0	6	0	n	0.57	8	6	8	6	y	0.50	1	1	1	1	n	0.74	14	5	14	5	y	1.00	6	0	6	0	n	0.71	10	4	10	4	y	0.86	6	1	6	1	n	0.82	9	2	9	2	y	0.62	13	8	13	8	y	ENSMUSG00000086071.8	Gm12354	chr4	lncRNA	predicted gene 12354
known_NIR_13481	chr4	20008643	20014631	+	20008346	20014631	A5SS	ENSMUST00000125799.8	known	0.99	538	7	538	7	y	0.98	408	7	408	7	y	0.97	756	22	756	22	y	0.98	766	14	766	14	y	0.99	983	10	983	10	y	0.95	372	18	372	18	y	0.97	838	22	838	22	y	0.99	481	7	481	7	y	0.98	516	11	516	11	y	0.98	885	14	885	14	y	0.98	463	10	463	10	y	0.99	737	6	737	6	y	ENSMUSG00000073988.14	Ttpa	chr4	protein_coding	tocopherol (alpha) transfer protein
known_NIR_13482	chr4	20023894	20028408	+	20023895	20028408	A5SS	ENSMUST00000121491.8	known	0.00	0	1075	0	1075	n	0.00	0	768	0	768	n	0.00	0	1445	0	1445	n	0.00	0	1474	0	1474	n	0.00	0	1846	0	1846	n	0.00	0	787	0	787	n	0.00	3	1725	3	1725	y	0.00	0	814	0	814	n	0.00	0	944	0	944	n	0.00	0	1582	0	1582	n	0.00	0	836	0	836	n	0.00	0	1373	0	1373	n	ENSMUSG00000073988.14	Ttpa	chr4	protein_coding	tocopherol (alpha) transfer protein
known_NIR_13483	chr4	21730503	21732489	+	21730503;21732302	21732218;21732489	ES	ENSMUST00000065928.11	known	0.15	4	22.0	4	25;19	y	0.17	4	20.0	4	21;19	y	0.02	1	40.5	1	37;44	n	0.02	1	50.5	1	53;48	n	0.08	3	34.5	3	41;28	y	0.00	0	16.5	0	15;18	n	0.11	4	33.0	4	36;30	y	0.11	2	16.0	2	21;11	y	0.00	0	19.5	0	19;20	n	0.06	2	32.5	2	39;26	y	0.11	3	23.5	3	26;21	y	0.06	2	33.0	2	37;29	y	ENSMUSG00000028252.21	Ccnc	chr4	protein_coding	cyclin C
known_NIR_13484	chr4	21735464	21740592	+	21735468	21740592	A5SS	ENSMUST00000065928.11	known	0.00	0	20	0	20	n	0.04	1	24	1	24	n	0.00	0	25	0	25	n	0.04	1	27	1	27	n	0.00	0	34	0	34	n	0.00	0	25	0	25	n	0.00	0	20	0	20	n	0.00	0	15	0	15	n	0.00	0	20	0	20	n	0.00	0	30	0	30	n	0.05	1	21	1	21	n	0.06	2	32	2	32	y	ENSMUSG00000028252.21	Ccnc	chr4	protein_coding	cyclin C
known_NIR_13485	chr4	21746774	21747483	+	21746774	21759425	A3SS	ENSMUST00000120679.8	known	0.89	16	2	16	2	y	0.82	14	3	14	3	y	1.00	10	0	10	0	n	0.56	5	4	5	4	n	0.62	13	8	13	8	y	1.00	7	0	7	0	n	1.00	16	0	16	0	n	1.00	6	0	6	0	n	1.00	11	0	11	0	n	0.67	12	6	12	6	y	0.93	14	1	14	1	n	1.00	11	0	11	0	n	ENSMUSG00000028252.21	Ccnc	chr4	protein_coding	cyclin C
known_NIR_13486	chr4	21746774	21748137	+	21746774	21747483	3pMXE	ENSMUST00000123294.8	known	0.67	33	16	33	16	y	0.69	31	14	31	14	y	0.81	42	10	42	10	y	0.89	39	5	39	5	y	0.75	39	13	39	13	y	0.75	21	7	21	7	y	0.73	44	16	44	16	y	0.79	22	6	22	6	y	0.68	23	11	23	11	y	0.74	34	12	34	12	y	0.70	33	14	33	14	y	0.82	49	11	49	11	y	ENSMUSG00000028252.21	Ccnc	chr4	protein_coding	cyclin C
known_NIR_13487	chr4	21746774	21748137	+	21746774;21747576	21747483;21748137	ES	ENSMUST00000065928.11	known	0.80	33	8.5	33	16;1	n	0.81	31	7.5	31	14;1	n	0.89	42	5.0	42	10;0	n	0.93	39	3.0	39	5;1	n	0.86	39	6.5	39	13;0	n	0.84	21	4.0	21	7;1	n	0.81	44	10.0	44	16;4	y	0.88	22	3.0	22	6;0	n	0.78	23	6.5	23	11;2	y	0.80	34	8.5	34	12;5	y	0.80	33	8.0	33	14;2	y	0.90	49	5.5	49	11;0	n	ENSMUSG00000028252.21	Ccnc	chr4	protein_coding	cyclin C
known_NIR_13488	chr4	21746774	21759425	+	21746774	21748137	3pMXE	ENSMUST00000102997.8	known	0.06	2	33	2	33	y	0.09	3	31	3	31	y	0.00	0	42	0	42	n	0.09	4	39	4	39	y	0.17	8	39	8	39	y	0.00	0	21	0	21	n	0.00	0	44	0	44	n	0.00	0	22	0	22	n	0.00	0	23	0	23	n	0.15	6	34	6	34	y	0.03	1	33	1	33	n	0.00	0	49	0	49	n	ENSMUSG00000028252.21	Ccnc	chr4	protein_coding	cyclin C
known_NIR_13489	chr4	21798735	21810742	+	21798735;21804313	21804226;21810742	ES	ENSMUST00000065111.15	known	0.20	2	8.0	2	9;7	y	0.00	0	4.5	0	5;4	n	0.21	3	11.0	3	11;11	y	0.00	0	9.5	0	9;10	n	0.00	0	18.5	0	18;19	n	0.12	1	7.0	1	6;8	n	0.08	1	11.5	1	11;12	n	0.00	0	12.0	0	13;11	n	0.00	0	11.0	0	7;15	n	0.13	2	13.5	2	13;14	y	0.00	0	7.0	0	7;7	n	0.00	0	17.5	0	17;18	n	ENSMUSG00000040455.18	Usp45	chr4	protein_coding	ubiquitin specific petidase 45
known_NIR_13490	chr4	21816938	21824417	+	21816938;21817644	21817501;21824417	ES	ENSMUST00000065111.15	known	0.00	0	4.5	0	6;3	n	0.40	3	4.5	3	5;4	y	0.38	10	16.5	10	17;16	y	0.32	3	6.5	3	8;5	y	0.46	6	7.0	6	7;7	y	0.38	3	5.0	3	5;5	y	0.18	3	13.5	3	12;15	y	0.41	6	8.5	6	7;10	y	0.56	5	4.0	5	6;2	y	0.43	6	8.0	6	7;9	y	0.33	1	2.0	1	1;3	n	0.46	3	3.5	3	1;6	n	ENSMUSG00000040455.18	Usp45	chr4	protein_coding	ubiquitin specific petidase 45
known_NIR_13491	chr4	21857368	21857614	+	21857368	21859084	A3SS	ENSMUST00000029911.12	known	0.00	0	30	0	30	n	0.03	1	32	1	32	n	0.03	1	38	1	38	n	0.00	0	33	0	33	n	0.06	3	49	3	49	y	0.14	3	18	3	18	y	0.04	1	23	1	23	n	0.00	0	35	0	35	n	0.00	0	34	0	34	n	0.10	4	35	4	35	y	0.00	0	25	0	25	n	0.00	0	48	0	48	n	ENSMUSG00000028248.16	Pnisr	chr4	protein_coding	PNN interacting serine/arginine-rich
known_NIR_13492	chr4	21859307	21860878	+	21859307	21860820	A3SS	ENSMUST00000029911.12	known	0.05	2	40	2	40	y	0.10	5	47	5	47	y	0.05	3	60	3	60	y	0.09	4	39	4	39	y	0.08	6	65	6	65	y	0.03	1	28	1	28	n	0.08	6	65	6	65	y	0.05	2	37	2	37	y	0.08	4	48	4	48	y	0.06	4	64	4	64	y	0.08	4	44	4	44	y	0.10	9	78	9	78	y	ENSMUSG00000028248.16	Pnisr	chr4	protein_coding	PNN interacting serine/arginine-rich
known_NIR_13493	chr4	21871608	21873589	+	21871608	21873586	A3SS	ENSMUST00000029911.12	known	0.12	9	64	9	64	y	0.00	0	52	0	52	n	0.00	0	61	0	61	n	0.20	8	33	8	33	y	0.00	0	53	0	53	n	0.00	0	24	0	24	n	0.14	10	64	10	64	y	0.00	0	35	0	35	n	0.00	0	64	0	64	n	0.07	6	78	6	78	y	0.00	0	68	0	68	n	0.06	6	95	6	95	y	ENSMUSG00000028248.16	Pnisr	chr4	protein_coding	PNN interacting serine/arginine-rich
known_NIR_13494	chr4	21874230	21874913	+	21874672	21874913	A5SS	ENSMUST00000029911.12	known	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.08	1	11	1	11	n	0.10	2	18	2	18	y	0.00	0	12	0	12	n	0.17	3	15	3	15	y	0.12	3	22	3	22	y	0.19	4	17	4	17	y	0.00	0	33	0	33	n	ENSMUSG00000028248.16	Pnisr	chr4	protein_coding	PNN interacting serine/arginine-rich
known_NIR_13495	chr4	22386252	22390714	+	22386252	22390677	A3SS	ENSMUST00000039234.10	known	0.00	0	31	0	31	n	0.09	3	32	3	32	y	0.00	0	28	0	28	n	0.00	0	29	0	29	n	0.00	0	44	0	44	n	0.09	2	21	2	21	y	0.00	0	41	0	41	n	0.00	0	15	0	15	n	0.00	0	24	0	24	n	0.00	0	41	0	41	n	0.03	1	35	1	35	n	0.02	1	47	1	47	n	ENSMUSG00000040410.15	Fbxl4	chr4	protein_coding	F-box and leucine-rich repeat protein 4
known_NIR_13496	chr4	22423927	22427150	+	22422788	22427150	A5SS	ENSMUST00000039234.10	known	0.10	3	26	3	26	y	0.09	4	39	4	39	y	0.08	3	34	3	34	y	0.00	0	31	0	31	n	0.02	1	60	1	60	n	0.15	5	29	5	29	y	0.03	1	32	1	32	n	0.00	0	42	0	42	n	0.00	0	45	0	45	n	0.06	4	62	4	62	y	0.05	3	53	3	53	y	0.05	3	53	3	53	y	ENSMUSG00000040410.15	Fbxl4	chr4	protein_coding	F-box and leucine-rich repeat protein 4
known_NIR_13497	chr4	25280719	25281676	-	25280768	25281676	A3SS	ENSMUST00000142949.8	known	0.08	3	34	3	34	y	0.00	0	24	0	24	n	0.08	5	59	5	59	y	0.11	4	31	4	31	y	0.09	4	43	4	43	y	0.06	2	32	2	32	y	0.07	3	39	3	39	y	0.08	3	36	3	36	y	0.00	0	26	0	26	n	0.00	0	29	0	29	n	0.05	1	19	1	19	n	0.07	2	25	2	25	y	ENSMUSG00000040359.15	Ufl1	chr4	protein_coding	UFM1 specific ligase 1
known_NIR_13498	chr4	26340634	26346597	-	26340998	26346597	A3SS	ENSMUST00000041374.8	known	0.27	3	8	3	8	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.33	4	8	4	8	y	0.00	0	12	0	12	n	0.50	1	1	1	1	n	0.00	0	5	0	5	n	0.17	1	5	1	5	n	0.50	1	1	1	1	n	0.00	0	12	0	12	n	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000040520.8	Manea	chr4	protein_coding	mannosidase, endo-alpha
known_NIR_13499	chr4	31981582	31985690	+	31981582	31985686	A3SS	ENSMUST00000037607.11	known	0.00	0	38	0	38	n	0.00	0	21	0	21	n	0.00	0	56	0	56	n	0.00	0	53	0	53	n	0.00	0	61	0	61	n	0.00	0	31	0	31	n	0.04	2	45	2	45	y	0.00	0	35	0	35	n	0.00	0	25	0	25	n	0.00	0	32	0	32	n	0.00	0	27	0	27	n	0.04	2	46	2	46	y	ENSMUSG00000028284.14	Map3k7	chr4	protein_coding	mitogen-activated protein kinase kinase kinase 7
known_NIR_13500	chr4	31988715	31989934	+	31988719	31989934	A5SS	ENSMUST00000037607.11	known	0.00	0	34	0	34	n	0.00	0	27	0	27	n	0.00	0	63	0	63	n	0.02	1	47	1	47	n	0.00	0	68	0	68	n	0.00	0	31	0	31	n	0.04	2	46	2	46	y	0.00	0	35	0	35	n	0.00	0	28	0	28	n	0.00	0	46	0	46	n	0.03	1	36	1	36	n	0.00	0	45	0	45	n	ENSMUSG00000028284.14	Map3k7	chr4	protein_coding	mitogen-activated protein kinase kinase kinase 7
known_NIR_13501	chr4	31992516	32002089	+	31992516;31994954	31994874;32002089	ES	ENSMUST00000037607.11	known	0.06	2	34.0	2	36;32	y	0.23	6	20.5	6	15;26	y	0.19	11	47.5	11	39;56	y	0.07	3	42.0	3	39;45	y	0.11	5	41.0	5	38;44	y	0.20	9	37.0	9	39;35	y	0.20	10	40.0	10	42;38	y	0.24	8	26.0	8	26;26	y	0.18	5	23.0	5	16;30	y	0.08	5	58.0	5	54;62	y	0.09	3	30.0	3	25;35	y	0.11	6	49.5	6	45;54	y	ENSMUSG00000028284.14	Map3k7	chr4	protein_coding	mitogen-activated protein kinase kinase kinase 7
known_NIR_13502	chr4	31992516;31995010	31994874;32002089	+	31992516	32002089	cassetteExon	ENSMUST00000080933.13	known	0.90	18.0	2	36;0	2	n	0.56	7.5	6	15;0	6	n	0.65	20.5	11	39;2	11	y	0.87	19.5	3	39;0	3	n	0.80	19.5	5	38;1	5	n	0.68	19.5	9	39;0	9	n	0.68	21.0	10	42;0	10	n	0.64	14.5	8	26;3	8	y	0.62	8.0	5	16;0	5	n	0.85	28.0	5	54;2	5	y	0.81	12.5	3	25;0	3	n	0.79	23.0	6	45;1	6	n	ENSMUSG00000028284.14	Map3k7	chr4	protein_coding	mitogen-activated protein kinase kinase kinase 7
known_NIR_13503	chr4	31995010	32002089	+	31994954	32002089	A5SS	ENSMUST00000037607.11	known	0.00	0	32	0	32	n	0.00	0	26	0	26	n	0.03	2	56	2	56	y	0.00	0	45	0	45	n	0.02	1	44	1	44	n	0.00	0	35	0	35	n	0.00	0	38	0	38	n	0.10	3	26	3	26	y	0.00	0	30	0	30	n	0.03	2	62	2	62	y	0.00	0	35	0	35	n	0.02	1	54	1	54	n	ENSMUSG00000028284.14	Map3k7	chr4	protein_coding	mitogen-activated protein kinase kinase kinase 7
known_NIR_13504	chr4	33043986	33049682	+	33043986	33045080	3pMXE	ENSMUST00000029944.13	known	0.06	4	68	4	68	y	0.04	3	74	3	74	y	0.00	0	182	0	182	n	0.01	1	108	1	108	n	0.02	2	123	2	123	y	0.01	1	84	1	84	n	0.00	0	104	0	104	n	0.01	1	92	1	92	n	0.00	0	72	0	72	n	0.01	1	121	1	121	n	0.02	2	101	2	101	y	0.00	0	113	0	113	n	ENSMUSG00000028277.14	Ube2j1	chr4	protein_coding	ubiquitin-conjugating enzyme E2J 1
known_NIR_13505	chr4	33043986	33049682	+	33043986;33045199	33045080;33049682	ES	ENSMUST00000124992.8	known	0.06	4	64.0	4	68;60	y	0.04	3	73.0	3	74;72	y	0.00	0	161.0	0	182;140	n	0.01	1	95.0	1	108;82	n	0.02	2	119.5	2	123;116	y	0.01	1	80.5	1	84;77	n	0.00	0	98.5	0	104;93	n	0.01	1	79.0	1	92;66	n	0.00	0	71.5	0	72;71	n	0.01	1	109.0	1	121;97	n	0.02	2	93.0	2	101;85	y	0.00	0	105.0	0	113;97	n	ENSMUSG00000028277.14	Ube2j1	chr4	protein_coding	ubiquitin-conjugating enzyme E2J 1
known_NIR_13506	chr4	33246507	33247298	-	33246507	33247948	A5SS	ENSMUST00000049357.10	known	0.00	0	147	0	147	n	0.00	0	64	0	64	n	0.01	3	557	3	557	y	0.00	0	171	0	171	n	0.00	0	217	0	217	n	0.00	0	203	0	203	n	0.01	2	192	2	192	y	0.00	0	207	0	207	n	0.00	0	88	0	88	n	0.00	0	173	0	173	n	0.00	0	128	0	128	n	0.00	0	150	0	150	n	ENSMUSG00000040128.10	Pnrc1	chr4	protein_coding	proline-rich nuclear receptor coactivator 1
known_NIR_13507	chr4	33246507	33289995	-	33246507	33247298	5pMXE	ENSMUST00000155616.2	known	-	-	-	-	-	-	-	-	-	-	-	-	0.86	19	3	19	3	y	1.00	1	0	1	0	n	1.00	9	0	9	0	n	1.00	1	0	1	0	n	0.75	6	2	6	2	n	1.00	6	0	6	0	n	1.00	3	0	3	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	n	1.00	2	0	2	0	n	ENSMUSG00000040128.10	Pnrc1	chr4	protein_coding	proline-rich nuclear receptor coactivator 1
known_NIR_13508	chr4	33246507	33289995	-	33246507	33247948	5pMXE	ENSMUST00000049357.10	known	0.00	0	147	0	147	n	0.00	0	64	0	64	n	0.03	19	557	19	557	y	0.01	1	171	1	171	n	0.04	9	217	9	217	y	0.00	1	203	1	203	n	0.03	6	192	6	192	y	0.03	6	207	6	207	y	0.03	3	88	3	88	y	0.01	1	173	1	173	n	0.02	3	128	3	128	y	0.01	2	150	2	150	y	ENSMUSG00000040128.10	Pnrc1	chr4	protein_coding	proline-rich nuclear receptor coactivator 1
known_NIR_13509	chr4	34578032	34579743	-	34578029	34579743	A3SS	ENSMUST00000108142.8	known	0.53	28	25	28	25	y	0.53	21	19	21	19	y	0.55	24	20	24	20	y	0.78	29	8	29	8	y	0.55	30	25	30	25	y	0.56	9	7	9	7	y	0.58	31	22	31	22	y	0.53	17	15	17	15	y	0.66	25	13	25	13	y	0.55	29	24	29	24	y	0.51	18	17	18	17	y	0.46	18	21	18	21	y	ENSMUSG00000040044.12	Orc3	chr4	protein_coding	origin recognition complex, subunit 3
known_NIR_13510	chr4	34592499	34593061	-	34587082	34593061	A3SS	ENSMUST00000108142.8	known	0.00	0	25	0	25	n	0.10	3	28	3	28	y	0.00	0	47	0	47	n	0.00	0	44	0	44	n	0.02	1	45	1	45	n	0.00	0	25	0	25	n	0.04	2	48	2	48	y	0.15	5	29	5	29	y	0.08	2	24	2	24	y	0.00	0	29	0	29	n	0.03	1	37	1	37	n	0.03	1	33	1	33	n	ENSMUSG00000040044.12	Orc3	chr4	protein_coding	origin recognition complex, subunit 3
known_NIR_13511	chr4	34598756	34599704	-	34599140	34599704	3pMXE	ENSMUST00000125218.8	known	1.00	20	0	20	0	n	1.00	12	0	12	0	n	1.00	35	0	35	0	n	1.00	37	0	37	0	n	1.00	35	0	35	0	n	1.00	21	0	21	0	n	0.96	43	2	43	2	y	1.00	10	0	10	0	n	1.00	25	0	25	0	n	0.86	30	5	30	5	y	1.00	32	0	32	0	n	1.00	30	0	30	0	n	ENSMUSG00000040044.12	Orc3	chr4	protein_coding	origin recognition complex, subunit 3
known_NIR_13512	chr4	34598756;34599140	34598983;34599704	-	34598756	34599704	cassetteExon	ENSMUST00000108142.8	known	0.02	0.5	20	1;0	20	n	0.04	0.5	12	1;0	12	n	0.00	0.0	35	0;0	35	n	0.00	0.0	37	0;0	37	n	0.00	0.0	35	0;0	35	n	0.00	0.0	21	0;0	21	n	0.04	2.0	43	2;2	43	y	0.00	0.0	10	0;0	10	n	0.00	0.0	25	0;0	25	n	0.09	3.0	30	1;5	30	n	0.00	0.0	32	0;0	32	n	0.00	0.0	30	0;0	30	n	ENSMUSG00000040044.12	Orc3	chr4	protein_coding	origin recognition complex, subunit 3
known_NIR_13513	chr4	34623513	34630473	+	34623513	34625401	3pMXE	ENSMUST00000136563.8	known	0.00	0	29	0	29	n	0.00	0	18	0	18	n	0.07	2	26	2	26	y	0.00	0	34	0	34	n	0.00	0	36	0	36	n	0.00	0	16	0	16	n	0.00	0	32	0	32	n	0.05	1	21	1	21	n	0.00	0	22	0	22	n	0.00	0	37	0	37	n	0.00	0	24	0	24	n	0.00	0	35	0	35	n	ENSMUSG00000028292.15	Rars2	chr4	protein_coding	arginyl-tRNA synthetase 2, mitochondrial
known_NIR_13514	chr4	34623513	34630473	+	34623513;34625484	34625401;34630473	ES	ENSMUST00000029968.14	known	0.00	0	29.0	0	29;29	n	0.00	0	15.5	0	18;13	n	0.08	2	24.5	2	26;23	y	0.00	0	29.5	0	34;25	n	0.00	0	36.0	0	36;36	n	0.00	0	13.0	0	16;10	n	0.00	0	29.0	0	32;26	n	0.04	1	22.0	1	21;23	n	0.00	0	20.0	0	22;18	n	0.00	0	34.0	0	37;31	n	0.00	0	25.0	0	24;26	n	0.00	0	33.0	0	35;31	n	ENSMUSG00000028292.15	Rars2	chr4	protein_coding	arginyl-tRNA synthetase 2, mitochondrial
known_NIR_13515	chr4	34625484	34630477	+	34625484	34630473	A3SS	ENSMUST00000029968.14	known	0.00	0	29	0	29	n	0.00	0	13	0	13	n	0.00	0	23	0	23	n	0.00	0	25	0	25	n	0.05	2	36	2	36	y	0.00	0	10	0	10	n	0.00	0	26	0	26	n	0.00	0	23	0	23	n	0.00	0	18	0	18	n	0.00	0	31	0	31	n	0.00	0	26	0	26	n	0.00	0	31	0	31	n	ENSMUSG00000028292.15	Rars2	chr4	protein_coding	arginyl-tRNA synthetase 2, mitochondrial
known_NIR_13516	chr4	34671846;34673928	34673809;34675030	-	34671846	34675030	cassetteExon	ENSMUST00000029970.14	known	0.01	0.5	54	1;0	54	n	0.04	2.0	48	2;2	48	y	0.03	2.5	72	4;1	72	n	0.03	2.0	63	2;2	63	y	0.03	2.0	68	3;1	68	n	0.03	1.5	43	2;1	43	n	0.02	1.0	64	2;0	64	n	0.05	2.0	38	4;0	38	n	0.03	1.0	35	2;0	35	n	0.01	1.0	77	0;2	77	n	0.05	3.0	59	3;3	59	y	0.01	1.0	82	1;1	82	n	ENSMUSG00000028293.15	Slc35a1	chr4	protein_coding	solute carrier family 35 (CMP-sialic acid transporter), member 1
known_NIR_13517	chr4	34769147	34778279	-	34769147	34771258	A5SS&ES	ENSMUST00000108133.10	known	0.00	0	71	0	71	n	0.00	0	126	0	126	n	0.00	0	103	0	103	n	0.01	1	92	1	92	n	0.00	0	125	0	125	n	0.00	0	80	0	80	n	0.00	0	180	0	180	n	0.00	0	91	0	91	n	0.00	0	87	0	87	n	0.02	2	116	2	116	y	0.05	3	62	3	62	y	0.00	0	77	0	77	n	ENSMUSG00000028295.15	Smim8	chr4	protein_coding	small integral membrane protein 8
known_NIR_13518	chr4	34769147	34778279	-	34769147;34771414	34771258;34778279	ES	ENSMUST00000029972.4	known	0.00	0	59.0	0	71;47	n	0.00	0	90.5	0	126;55	n	0.00	0	75.0	0	103;47	n	0.01	1	68.5	1	92;45	n	0.00	0	92.0	0	125;59	n	0.00	0	54.0	0	80;28	n	0.00	0	107.0	0	180;34	n	0.00	0	62.0	0	91;33	n	0.00	0	61.5	0	87;36	n	0.02	2	80.0	2	116;44	y	0.06	3	48.0	3	62;34	y	0.00	0	60.0	0	77;43	n	ENSMUSG00000028295.15	Smim8	chr4	protein_coding	small integral membrane protein 8
known_NIR_13519	chr4	34771414	34778224	-	34771414	34771874	A5SS&ES	ENSMUST00000108131.8	known	0.96	23	1	23	1	n	0.89	16	2	16	2	y	1.00	17	0	17	0	n	0.91	10	1	10	1	n	1.00	22	0	22	0	n	0.90	9	1	9	1	n	0.91	10	1	10	1	n	0.67	4	2	4	2	n	0.73	8	3	8	3	y	0.88	7	1	7	1	n	0.83	5	1	5	1	n	1.00	12	0	12	0	n	ENSMUSG00000028295.15	Smim8	chr4	protein_coding	small integral membrane protein 8
known_NIR_13520	chr4	34771414	34778224	-	34771414	34771878	A5SS&ES	ENSMUST00000147396.2	known	1.00	23	0	23	0	n	0.94	16	1	16	1	n	1.00	17	0	17	0	n	0.83	10	2	10	2	y	0.96	22	1	22	1	n	1.00	9	0	9	0	n	0.83	10	2	10	2	y	1.00	4	0	4	0	n	0.89	8	1	8	1	n	1.00	7	0	7	0	n	0.83	5	1	5	1	n	0.86	12	2	12	2	y	ENSMUSG00000028295.15	Smim8	chr4	protein_coding	small integral membrane protein 8
known_NIR_13521	chr4	34771414	34778224	-	34771414;34772053	34771878;34778224	ES	ENSMUST00000108132.8	known	0.98	23	0.5	23	0;1	n	0.97	16	0.5	16	1;0	n	0.94	17	1.0	17	0;2	n	0.83	10	2.0	10	2;2	y	0.96	22	1.0	22	1;1	n	0.95	9	0.5	9	0;1	n	0.91	10	1.0	10	2;0	n	0.80	4	1.0	4	0;2	n	0.94	8	0.5	8	1;0	n	0.78	7	2.0	7	0;4	n	0.71	5	2.0	5	1;3	n	0.92	12	1.0	12	2;0	n	ENSMUSG00000028295.15	Smim8	chr4	protein_coding	small integral membrane protein 8
known_NIR_13522	chr4	34771414	34778279	-	34771414	34771874	A5SS&ES	ENSMUST00000108133.10	known	0.98	47	1	47	1	n	0.96	55	2	55	2	y	1.00	47	0	47	0	n	0.98	45	1	45	1	n	1.00	59	0	59	0	n	0.97	28	1	28	1	n	0.97	34	1	34	1	n	0.94	33	2	33	2	y	0.92	36	3	36	3	y	0.98	44	1	44	1	n	0.97	34	1	34	1	n	1.00	43	0	43	0	n	ENSMUSG00000028295.15	Smim8	chr4	protein_coding	small integral membrane protein 8
known_NIR_13523	chr4	34771414	34778279	-	34771414	34778224	A5SS	ENSMUST00000108134.8	known	0.67	47	23	47	23	y	0.77	55	16	55	16	y	0.73	47	17	47	17	y	0.82	45	10	45	10	y	0.73	59	22	59	22	y	0.76	28	9	28	9	y	0.77	34	10	34	10	y	0.89	33	4	33	4	y	0.82	36	8	36	8	y	0.86	44	7	44	7	y	0.87	34	5	34	5	y	0.78	43	12	43	12	y	ENSMUSG00000028295.15	Smim8	chr4	protein_coding	small integral membrane protein 8
known_NIR_13524	chr4	34771414;34772053	34771878;34778279	-	34771414	34778279	cassetteExon	ENSMUST00000029972.4	known	0.00	0.0	47	0;0	47	n	0.02	1.0	55	1;1	55	n	0.00	0.0	47	0;0	47	n	0.04	2.0	45	2;2	45	y	0.02	1.5	59	1;2	59	n	0.05	1.5	28	0;3	28	n	0.04	1.5	34	2;1	34	n	0.01	0.5	33	0;1	33	n	0.01	0.5	36	1;0	36	n	0.01	0.5	44	0;1	44	n	0.03	1.0	34	1;1	34	n	0.03	1.5	43	2;1	43	n	ENSMUSG00000028295.15	Smim8	chr4	protein_coding	small integral membrane protein 8
known_NIR_13525	chr4	35218916	35221881	-	35218916	35225788	A5SS	ENSMUST00000108127.4	known	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.32	7	15	7	15	y	0.25	1	3	1	3	n	0.08	1	12	1	12	n	0.00	0	8	0	8	n	0.30	3	7	3	7	y	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.22	2	7	2	7	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000028300.15	C9orf72	chr4	protein_coding	C9orf72, member of C9orf72-SMCR8 complex
known_NIR_13526	chr4	3593637;3595032	3594935;3595357	+	3593637	3595357	cassetteExon	ENSMUST00000052712.6	known	0.10	1.0	9	1;1	9	n	0.00	0.0	17	0;0	17	n	0.04	0.5	11	1;0	11	n	0.00	0.0	17	0;0	17	n	0.02	0.5	21	0;1	21	n	0.12	1.0	7	0;2	7	n	0.00	0.0	12	0;0	12	n	0.00	0.0	17	0;0	17	n	0.17	2.0	10	1;3	10	n	0.00	0.0	19	0;0	19	n	0.11	2.0	16	2;2	16	y	0.00	0.0	27	0;0	27	n	ENSMUSG00000028233.7	Tgs1	chr4	protein_coding	trimethylguanosine synthase 1
known_NIR_13527	chr4	3738798	3742442	+	3738861	3742442	A5SS	ENSMUST00000041377.13	known	0.15	5	29	5	29	y	0.26	6	17	6	17	y	0.21	9	34	9	34	y	0.05	2	37	2	37	y	0.13	8	53	8	53	y	0.42	5	7	5	7	y	0.32	12	26	12	26	y	0.16	6	32	6	32	y	0.18	4	18	4	18	y	0.12	6	45	6	45	y	0.26	10	29	10	29	y	0.27	17	47	17	47	y	ENSMUSG00000042228.15	Lyn	chr4	protein_coding	LYN proto-oncogene, Src family tyrosine kinase
known_NIR_13528	chr4	3938962	3939424	+	3938962	3939379	A3SS	ENSMUST00000108386.8	known	0.55	6	5	6	5	y	0.57	12	9	12	9	y	0.50	3	3	3	3	n	0.56	5	4	5	4	n	0.50	5	5	5	5	y	0.67	4	2	4	2	n	0.58	15	11	15	11	y	0.50	3	3	3	3	n	0.86	12	2	12	2	y	0.56	10	8	10	8	y	0.64	9	5	9	5	y	0.62	8	5	8	5	y	ENSMUSG00000042198.13	Chchd7	chr4	protein_coding	coiled-coil-helix-coiled-coil-helix domain containing 7
known_NIR_13529	chr4	3939131	3939379	+	3938962	3939379	A5SS	ENSMUST00000108386.8	known	0.93	69	5	69	5	y	0.88	63	9	63	9	y	0.95	60	3	60	3	y	0.95	75	4	75	4	y	0.92	54	5	54	5	y	0.93	25	2	25	2	y	0.89	91	11	91	11	y	0.94	51	3	51	3	y	0.97	63	2	63	2	y	0.91	79	8	79	8	y	0.93	66	5	66	5	y	0.93	63	5	63	5	y	ENSMUSG00000042198.13	Chchd7	chr4	protein_coding	coiled-coil-helix-coiled-coil-helix domain containing 7
known_NIR_13530	chr4	3939131	3939379	+	3939131	3939424	A3SS	ENSMUST00000121651.8	known	0.81	69	16	69	16	y	0.83	63	13	63	13	y	0.78	60	17	60	17	y	0.86	75	12	75	12	y	0.67	54	27	54	27	y	0.62	25	15	25	15	y	0.76	91	29	91	29	y	0.81	51	12	51	12	y	0.86	63	10	63	10	y	0.81	79	19	79	19	y	0.79	66	18	66	18	y	0.84	63	12	63	12	y	ENSMUSG00000042198.13	Chchd7	chr4	protein_coding	coiled-coil-helix-coiled-coil-helix domain containing 7
known_NIR_13531	chr4	3939131	3939424	+	3938962	3939424	A5SS	ENSMUST00000149544.8	known	0.73	16	6	16	6	y	0.52	13	12	13	12	y	0.85	17	3	17	3	y	0.71	12	5	12	5	y	0.84	27	5	27	5	y	0.79	15	4	15	4	y	0.66	29	15	29	15	y	0.80	12	3	12	3	y	0.45	10	12	10	12	y	0.66	19	10	19	10	y	0.67	18	9	18	9	y	0.60	12	8	12	8	y	ENSMUSG00000042198.13	Chchd7	chr4	protein_coding	coiled-coil-helix-coiled-coil-helix domain containing 7
known_NIR_13532	chr4	3942819;3943026	3942988;3943388	+	3942819	3943388	cassetteExon	ENSMUST00000108386.8	known	0.00	0.0	145	0;0	145	n	0.01	1.0	171	0;2	171	n	0.01	1.0	107	2;0	107	n	0.01	1.5	120	1;2	120	n	0.00	0.5	148	0;1	148	n	0.03	2.0	77	3;1	77	n	0.01	1.0	151	1;1	151	n	0.02	1.5	85	2;1	85	n	0.00	0.0	127	0;0	127	n	0.01	1.5	150	2;1	150	n	0.02	3.5	171	3;4	171	y	0.01	1.0	163	1;1	163	n	ENSMUSG00000042198.13	Chchd7	chr4	protein_coding	coiled-coil-helix-coiled-coil-helix domain containing 7
known_NIR_13533	chr4	40167191	40168423	+	40167191	40175665	A3SS	ENSMUST00000102973.4	known	0.00	0	171	0	171	n	0.00	0	113	0	113	n	0.00	0	131	0	131	n	0.01	2	298	2	298	y	0.00	0	266	0	266	n	0.00	0	73	0	73	n	0.00	0	225	0	225	n	0.00	0	113	0	113	n	0.00	0	201	0	201	n	0.00	0	278	0	278	n	0.00	0	186	0	186	n	0.00	0	280	0	280	n	ENSMUSG00000028405.10	Aco1	chr4	protein_coding	aconitase 1
known_NIR_13534	chr4	40272854	40279158	-	40272854;40277745	40277653;40279158	ES	ENSMUST00000095128.10	known	0.00	0	509.5	0	562;457	n	0.00	2	457.5	2	520;395	y	0.00	1	442.5	1	496;389	n	0.00	0	486.5	0	531;442	n	0.01	3	556.5	3	618;495	y	0.00	1	271.5	1	286;257	n	0.01	6	607.5	6	655;560	y	0.00	0	270.5	0	283;258	n	0.00	1	476.5	1	522;431	n	0.00	2	686.5	2	772;601	y	0.00	1	604.0	1	653;555	n	0.00	2	627.5	2	707;548	y	ENSMUSG00000071014.11	Ndufb6	chr4	protein_coding	NADH:ubiquinone oxidoreductase subunit B6
known_NIR_13535	chr4	40693449	40695377	-	40693449;40695136	40694852;40695377	ES	ENSMUST00000068125.11	known	0.00	0	23.5	0	28;19	n	0.00	0	17.0	0	22;12	n	0.04	1	27.5	1	28;27	n	0.00	0	23.0	0	17;29	n	0.05	2	37.5	2	36;39	y	0.00	0	17.0	0	20;14	n	0.03	1	29.0	1	33;25	n	0.00	0	25.5	0	30;21	n	0.04	1	24.5	1	20;29	n	0.04	2	45.0	2	42;48	y	0.00	0	29.5	0	33;26	n	0.00	0	37.0	0	28;46	n	ENSMUSG00000028411.16	Aptx	chr4	protein_coding	aprataxin
known_NIR_13536	chr4	40693449	40695377	-	40695136	40695377	3pMXE	ENSMUST00000155710.2	known	0.00	0	19	0	19	n	0.00	0	12	0	12	n	0.04	1	27	1	27	n	0.00	0	29	0	29	n	0.05	2	39	2	39	y	0.00	0	14	0	14	n	0.04	1	25	1	25	n	0.00	0	21	0	21	n	0.03	1	29	1	29	n	0.04	2	48	2	48	y	0.00	0	26	0	26	n	0.00	0	46	0	46	n	ENSMUSG00000028411.16	Aptx	chr4	protein_coding	aprataxin
known_NIR_13537	chr4	40695418	40697217	-	40695423	40697217	A3SS	ENSMUST00000068125.11	known	0.30	7	16	7	16	y	0.16	3	16	3	16	y	0.08	2	23	2	23	y	0.15	6	35	6	35	y	0.21	9	33	9	33	y	0.00	0	13	0	13	n	0.08	3	33	3	33	y	0.13	3	20	3	20	y	0.10	3	26	3	26	y	0.21	12	44	12	44	y	0.10	4	35	4	35	y	0.09	4	39	4	39	y	ENSMUSG00000028411.16	Aptx	chr4	protein_coding	aprataxin
known_NIR_13538	chr4	40697353	40702374	-	40697353	40703137	A5SS	ENSMUST00000030119.10	known	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.27	3	8	3	8	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	ENSMUSG00000028411.16	Aptx	chr4	protein_coding	aprataxin
known_NIR_13539	chr4	40697353	40703137	-	40697353	40702724	5pMXE	ENSMUST00000068125.11	known	0.17	1	5	1	5	n	0.57	4	3	4	3	n	0.73	8	3	8	3	y	0.27	3	8	3	8	y	0.85	11	2	11	2	y	0.75	6	2	6	2	n	0.73	8	3	8	3	y	0.38	3	5	3	5	n	0.50	5	5	5	5	y	0.50	13	13	13	13	y	0.65	11	6	11	6	y	0.31	4	9	4	9	y	ENSMUSG00000028411.16	Aptx	chr4	protein_coding	aprataxin
known_NIR_13540	chr4	40722633	40723703	+	40722435	40723703	A5SS	ENSMUST00000139406.2	known	1.00	616	0	616	0	n	1.00	358	0	358	0	n	1.00	324	0	324	0	n	1.00	758	0	758	0	n	1.00	704	2	704	2	y	1.00	173	0	173	0	n	1.00	585	0	585	0	n	1.00	259	0	259	0	n	1.00	376	0	376	0	n	1.00	525	0	525	0	n	1.00	375	0	375	0	n	0.99	531	3	531	3	y	ENSMUSG00000028410.14	Dnaja1	chr4	protein_coding	DnaJ heat shock protein family (Hsp40) member A1
known_NIR_13541	chr4	40723001	40723703	+	40722633	40723703	A5SS	ENSMUST00000030118.10	known	0.00	0	616	0	616	n	0.00	1	358	1	358	n	0.00	0	324	0	324	n	0.00	0	758	0	758	n	0.00	3	704	3	704	y	0.00	0	173	0	173	n	0.00	0	585	0	585	n	0.00	1	259	1	259	n	0.01	2	376	2	376	y	0.01	5	525	5	525	y	0.01	4	375	4	375	y	0.00	1	531	1	531	n	ENSMUSG00000028410.14	Dnaja1	chr4	protein_coding	DnaJ heat shock protein family (Hsp40) member A1
known_NIR_13542	chr4	40723136	40723703	+	40722633	40723703	A5SS	ENSMUST00000030118.10	known	0.00	2	616	2	616	y	0.00	0	358	0	358	n	0.00	1	324	1	324	n	0.00	2	758	2	758	y	0.00	1	704	1	704	n	0.01	1	173	1	173	n	0.00	1	585	1	585	n	0.01	2	259	2	259	y	0.01	2	376	2	376	y	0.00	2	525	2	525	y	0.01	3	375	3	375	y	0.00	1	531	1	531	n	ENSMUSG00000028410.14	Dnaja1	chr4	protein_coding	DnaJ heat shock protein family (Hsp40) member A1
known_NIR_13543	chr4	40723844	40726105	+	40723844	40723973	3pMXE	ENSMUST00000126020.2	known	0.00	0	765	0	765	n	0.00	0	444	0	444	n	0.00	0	379	0	379	n	0.00	0	843	0	843	n	0.00	1	764	1	764	n	0.01	3	202	3	202	y	0.00	2	625	2	625	y	0.00	0	323	0	323	n	0.00	1	489	1	489	n	0.00	0	776	0	776	n	0.00	2	434	2	434	y	0.00	0	604	0	604	n	ENSMUSG00000028410.14	Dnaja1	chr4	protein_coding	DnaJ heat shock protein family (Hsp40) member A1
known_NIR_13544	chr4	40723844	40726105	+	40723844;40724150	40723973;40726105	ES	ENSMUST00000030118.10	known	0.00	0	810.5	0	765;856	n	0.00	0	543.5	0	444;643	n	0.00	0	444.0	0	379;509	n	0.00	0	901.0	0	843;959	n	0.00	1	864.5	1	764;965	n	0.01	3	226.5	3	202;251	y	0.00	2	726.5	2	625;828	y	0.00	0	349.5	0	323;376	n	0.00	1	548.0	1	489;607	n	0.00	0	830.5	0	776;885	n	0.00	2	508.5	2	434;583	y	0.00	0	676.5	0	604;749	n	ENSMUSG00000028410.14	Dnaja1	chr4	protein_coding	DnaJ heat shock protein family (Hsp40) member A1
known_NIR_13545	chr4	40723844	40726105	+	40724150	40726105	5pMXE	ENSMUST00000148976.2	known	0.00	0	856	0	856	n	0.00	0	643	0	643	n	0.00	0	509	0	509	n	0.00	0	959	0	959	n	0.00	1	965	1	965	n	0.01	3	251	3	251	y	0.00	2	828	2	828	y	0.00	0	376	0	376	n	0.00	1	607	1	607	n	0.00	0	885	0	885	n	0.00	2	583	2	583	y	0.00	0	749	0	749	n	ENSMUSG00000028410.14	Dnaja1	chr4	protein_coding	DnaJ heat shock protein family (Hsp40) member A1
known_NIR_13546	chr4	41009269	41012058	+	41009269	41011527	A3SS	ENSMUST00000091614.7	known	1.00	44	0	44	0	n	0.94	62	4	62	4	y	0.93	79	6	79	6	y	1.00	50	0	50	0	n	1.00	70	0	70	0	n	1.00	27	0	27	0	n	1.00	74	0	74	0	n	0.95	42	2	42	2	y	1.00	67	0	67	0	n	0.88	63	9	63	9	y	1.00	51	0	51	0	n	0.94	87	6	87	6	y	ENSMUSG00000028423.16	Nfx1	chr4	protein_coding	nuclear transcription factor, X-box binding 1
known_NIR_13547	chr4	41009269	41015203	+	41009269	41011527	3pMXE	ENSMUST00000091614.7	known	1.00	28	0	28	0	n	0.86	24	4	24	4	y	0.88	44	6	44	6	y	1.00	30	0	30	0	n	1.00	44	0	44	0	n	1.00	27	0	27	0	n	1.00	37	0	37	0	n	0.91	21	2	21	2	y	1.00	19	0	19	0	n	0.81	39	9	39	9	y	1.00	19	0	19	0	n	0.86	36	6	36	6	y	ENSMUSG00000028423.16	Nfx1	chr4	protein_coding	nuclear transcription factor, X-box binding 1
known_NIR_13548	chr4	41009269	41015203	+	41009269	41012058	3pMXE	ENSMUST00000030133.15	known	0.39	28	44	28	44	y	0.28	24	62	24	62	y	0.36	44	79	44	79	y	0.38	30	50	30	50	y	0.39	44	70	44	70	y	0.50	27	27	27	27	y	0.33	37	74	37	74	y	0.33	21	42	21	42	y	0.22	19	67	19	67	y	0.38	39	63	39	63	y	0.27	19	51	19	51	y	0.29	36	87	36	87	y	ENSMUSG00000028423.16	Nfx1	chr4	protein_coding	nuclear transcription factor, X-box binding 1
known_NIR_13549	chr4	41366930	41371725	+	41366930	41371197	3pMXE	ENSMUST00000136705.2	known	0.98	45	1	45	1	n	1.00	29	0	29	0	n	0.97	58	2	58	2	y	1.00	42	0	42	0	n	0.99	75	1	75	1	n	1.00	29	0	29	0	n	0.98	53	1	53	1	n	1.00	26	0	26	0	n	1.00	42	0	42	0	n	1.00	63	0	63	0	n	1.00	49	0	49	0	n	0.98	43	1	43	1	n	ENSMUSG00000028437.15	Ubap1	chr4	protein_coding	ubiquitin-associated protein 1
known_NIR_13550	chr4	41366930	41371725	+	41371323	41371725	5pMXE	ENSMUST00000154529.2	known	0.96	45	2	45	2	y	1.00	29	0	29	0	n	0.98	58	1	58	1	n	1.00	42	0	42	0	n	1.00	75	0	75	0	n	0.97	29	1	29	1	n	0.96	53	2	53	2	y	1.00	26	0	26	0	n	1.00	42	0	42	0	n	1.00	63	0	63	0	n	0.98	49	1	49	1	n	1.00	43	0	43	0	n	ENSMUSG00000028437.15	Ubap1	chr4	protein_coding	ubiquitin-associated protein 1
known_NIR_13551	chr4	41371849	41387175	+	41371849	41378947	3pMXE	ENSMUST00000154529.2	known	0.00	0	52	0	52	n	0.00	0	37	0	37	n	0.10	7	63	7	63	y	0.00	0	49	0	49	n	0.04	3	72	3	72	y	0.15	5	29	5	29	y	0.04	3	78	3	78	y	0.05	2	40	2	40	y	0.00	0	59	0	59	n	0.00	0	61	0	61	n	0.07	3	39	3	39	y	0.02	1	64	1	64	n	ENSMUSG00000028437.15	Ubap1	chr4	protein_coding	ubiquitin-associated protein 1
known_NIR_13552	chr4	41371849	41387175	+	41371849;41379870	41378947;41387175	ES	ENSMUST00000072866.12	known	0.00	0	77.5	0	52;103	n	0.00	0	57.0	0	37;77	n	0.07	7	95.0	7	63;127	y	0.00	0	84.5	0	49;120	n	0.03	3	105.0	3	72;138	y	0.10	5	45.0	5	29;61	y	0.03	3	116.5	3	78;155	y	0.04	2	48.5	2	40;57	y	0.00	0	79.5	0	59;100	n	0.00	0	104.0	0	61;147	n	0.04	3	74.5	3	39;110	y	0.01	1	112.0	1	64;160	n	ENSMUSG00000028437.15	Ubap1	chr4	protein_coding	ubiquitin-associated protein 1
known_NIR_13553	chr4	41371849;41387357	41387175;41388096	+	41371849;41379870	41378947;41388096	MXE	ENSMUST00000108060.10	known	0.67	58.0	29.0	0;116	52;6	n	0.68	42.0	19.5	0;84	37;2	n	0.63	57.0	34.0	7;107	63;5	y	0.69	56.5	25.0	0;113	49;1	n	0.69	81.5	37.0	3;160	72;2	y	0.67	30.5	15.0	5;56	29;1	n	0.67	81.0	40.0	3;159	78;2	y	0.62	32.5	20.0	2;63	40;0	n	0.60	44.0	29.5	0;88	59;0	n	0.68	67.0	31.5	0;134	61;2	n	0.74	61.5	21.5	3;120	39;4	y	0.63	58.5	34.5	1;116	64;5	n	ENSMUSG00000028437.15	Ubap1	chr4	protein_coding	ubiquitin-associated protein 1
known_NIR_13554	chr4	41379870	41387175	+	41371849	41387175	A5SS	ENSMUST00000132235.2	known	1.00	103	0	103	0	n	1.00	77	0	77	0	n	0.95	127	7	127	7	y	1.00	120	0	120	0	n	0.98	138	3	138	3	y	0.92	61	5	61	5	y	0.98	155	3	155	3	y	0.97	57	2	57	2	y	1.00	100	0	100	0	n	1.00	147	0	147	0	n	0.97	110	3	110	3	y	0.99	160	1	160	1	n	ENSMUSG00000028437.15	Ubap1	chr4	protein_coding	ubiquitin-associated protein 1
known_NIR_13555	chr4	41379870	41388096	+	41387357	41388096	A5SS&ES	ENSMUST00000132235.2	known	0.05	6	116	6	116	y	0.02	2	84	2	84	y	0.04	5	107	5	107	y	0.01	1	113	1	113	n	0.01	2	160	2	160	y	0.02	1	56	1	56	n	0.01	2	159	2	159	y	0.00	0	63	0	63	n	0.00	0	88	0	88	n	0.01	2	134	2	134	y	0.03	4	120	4	120	y	0.04	5	116	5	116	y	ENSMUSG00000028437.15	Ubap1	chr4	protein_coding	ubiquitin-associated protein 1
known_NIR_13556	chr4	41379870;41387357	41387175;41388096	+	41379870	41388096	cassetteExon	ENSMUST00000108060.10	known	0.95	109.5	6	103;116	6	y	0.98	80.5	2	77;84	2	y	0.96	117.0	5	127;107	5	y	0.99	116.5	1	120;113	1	n	0.99	149.0	2	138;160	2	y	0.98	58.5	1	61;56	1	n	0.99	157.0	2	155;159	2	y	1.00	60.0	0	57;63	0	n	1.00	94.0	0	100;88	0	n	0.99	140.5	2	147;134	2	y	0.97	115.0	4	110;120	4	y	0.97	138.0	5	160;116	5	y	ENSMUSG00000028437.15	Ubap1	chr4	protein_coding	ubiquitin-associated protein 1
known_NIR_13557	chr4	41499690	41502141	-	41499690	41502991	A5SS	ENSMUST00000054920.5	known	0.04	1	22	1	22	n	0.04	1	24	1	24	n	0.00	0	35	0	35	n	0.00	0	42	0	42	n	0.07	3	37	3	37	y	0.04	1	22	1	22	n	0.05	2	36	2	36	y	0.08	3	33	3	33	y	0.06	2	31	2	31	y	0.11	4	34	4	34	y	0.04	1	23	1	23	n	0.04	1	23	1	23	n	ENSMUSG00000046312.5	Myorg	chr4	protein_coding	myogenesis regulating glycosidase (putative)
known_NIR_13558	chr4	41520395	41520912	-	41520398	41520912	A3SS	ENSMUST00000108049.9	known	0.50	3	3	3	3	n	0.00	0	10	0	10	n	0.15	4	23	4	23	y	0.36	4	7	4	7	y	0.00	0	28	0	28	n	0.00	0	6	0	6	n	0.27	7	19	7	19	y	0.29	2	5	2	5	n	0.38	3	5	3	5	n	0.00	0	8	0	8	n	0.07	1	14	1	14	n	0.25	1	3	1	3	n	ENSMUSG00000028439.15	Fam219a	chr4	protein_coding	family with sequence similarity 219, member A
known_NIR_13559	chr4	41524414	41569177	-	41524414	41569210	A5SS	ENSMUST00000108049.9	known	1.00	6	0	6	0	n	1.00	4	0	4	0	n	1.00	14	0	14	0	n	0.75	9	3	9	3	y	1.00	16	0	16	0	n	1.00	8	0	8	0	n	0.95	18	1	18	1	n	1.00	7	0	7	0	n	-	-	-	-	-	-	1.00	4	0	4	0	n	1.00	8	0	8	0	n	1.00	9	0	9	0	n	ENSMUSG00000028439.15	Fam219a	chr4	protein_coding	family with sequence similarity 219, member A
known_NIR_13560	chr4	41631787	41632140	+	41630676	41632140	A5SS	ENSMUST00000102963.10	known	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.14	8	50	8	50	y	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.18	2	9	2	9	y	0.09	1	10	1	10	n	0.33	2	4	2	4	n	0.00	0	4	0	4	n	0.30	7	16	7	16	y	ENSMUSG00000061322.16	Dnai1	chr4	protein_coding	dynein axonemal intermediate chain 1
known_NIR_13561	chr4	41715455	41716396	-	41715238	41716396	A3SS	ENSMUST00000171641.2	known	0.94	171	10	171	10	y	0.93	173	13	173	13	y	0.95	149	8	149	8	y	0.92	161	14	161	14	y	0.92	167	15	167	15	y	1.00	79	0	79	0	n	0.90	205	22	205	22	y	1.00	99	0	99	0	n	0.93	138	11	138	11	y	0.92	198	18	198	18	y	1.00	161	0	161	0	n	0.94	174	11	174	11	y	ENSMUSG00000028447.12	Dctn3	chr4	protein_coding	dynactin 3
known_NIR_13562	chr4	41739580	41740776	-	41739580	41740550	A5SS&ES	ENSMUST00000133590.2	known	0.00	2	440	2	440	y	0.00	1	311	1	311	n	0.00	1	361	1	361	n	0.00	0	341	0	341	n	0.00	0	602	0	602	n	0.01	2	207	2	207	y	0.00	0	512	0	512	n	0.00	0	296	0	296	n	0.00	0	368	0	368	n	0.00	0	442	0	442	n	0.00	2	429	2	429	y	0.00	0	477	0	477	n	ENSMUSG00000036078.17	Sigmar1	chr4	protein_coding	sigma non-opioid intracellular receptor 1
known_NIR_13563	chr4	41739580	41740776	-	41739580;41740642	41740550;41740776	ES	ENSMUST00000059354.15	known	0.00	2	423.5	2	440;407	y	0.00	1	301.0	1	311;291	n	0.00	1	352.5	1	361;344	n	0.00	0	347.5	0	341;354	n	0.00	0	601.5	0	602;601	n	0.01	2	229.0	2	207;251	y	0.00	0	504.0	0	512;496	n	0.00	0	322.0	0	296;348	n	0.00	0	366.5	0	368;365	n	0.00	0	420.0	0	442;398	n	0.00	2	420.0	2	429;411	y	0.00	0	459.0	0	477;441	n	ENSMUSG00000036078.17	Sigmar1	chr4	protein_coding	sigma non-opioid intracellular receptor 1
known_NIR_13564	chr4	41739580	41740776	-	41740642	41740776	3pMXE	ENSMUST00000149647.2	known	0.00	2	407	2	407	y	0.00	1	291	1	291	n	0.00	1	344	1	344	n	0.00	0	354	0	354	n	0.00	0	601	0	601	n	0.01	2	251	2	251	y	0.00	0	496	0	496	n	0.00	0	348	0	348	n	0.00	0	365	0	365	n	0.00	0	398	0	398	n	0.00	2	411	2	411	y	0.00	0	441	0	441	n	ENSMUSG00000036078.17	Sigmar1	chr4	protein_coding	sigma non-opioid intracellular receptor 1
known_NIR_13565	chr4	41740642	41740823	-	41740642	41740776	A5SS	ENSMUST00000059354.15	known	0.03	14	407	14	407	y	0.01	4	291	4	291	y	0.02	8	344	8	344	y	0.04	13	354	13	354	y	0.03	19	601	19	601	y	0.06	16	251	16	251	y	0.05	26	496	26	496	y	0.02	6	348	6	348	y	0.03	11	365	11	365	y	0.04	16	398	16	398	y	0.04	19	411	19	411	y	0.03	14	441	14	441	y	ENSMUSG00000036078.17	Sigmar1	chr4	protein_coding	sigma non-opioid intracellular receptor 1
known_NIR_13566	chr4	41740976	41745002	-	41740976	41741102	5pMXE	ENSMUST00000059354.15	known	0.00	1	288	1	288	n	0.03	6	193	6	193	y	0.03	9	256	9	256	y	0.02	6	260	6	260	y	0.04	16	437	16	437	y	0.10	17	151	17	151	y	0.06	20	318	20	318	y	0.05	10	184	10	184	y	0.02	4	237	4	237	y	0.03	11	307	11	307	y	0.01	4	306	4	306	y	0.01	3	265	3	265	y	ENSMUSG00000036078.17	Sigmar1	chr4	protein_coding	sigma non-opioid intracellular receptor 1
known_NIR_13567	chr4	41740976	41755169	-	41740976	41741102	5pMXE	ENSMUST00000059354.15	known	0.00	0	288	0	288	n	0.01	2	193	2	193	y	0.00	0	256	0	256	n	0.00	0	260	0	260	n	0.00	1	437	1	437	n	0.00	0	151	0	151	n	0.00	0	318	0	318	n	0.00	0	184	0	184	n	0.00	0	237	0	237	n	0.00	0	307	0	307	n	0.00	0	306	0	306	n	0.01	2	265	2	265	y	ENSMUSG00000036078.17	Sigmar1	chr4	protein_coding	sigma non-opioid intracellular receptor 1
known_NIR_13568	chr4	41755088	41755169	-	41740976	41755169	A3SS	ENSMUST00000133590.2	known	1.00	9	0	9	0	n	0.67	4	2	4	2	n	1.00	6	0	6	0	n	1.00	6	0	6	0	n	0.91	10	1	10	1	n	1.00	1	0	1	0	n	1.00	15	0	15	0	n	1.00	6	0	6	0	n	1.00	6	0	6	0	n	1.00	9	0	9	0	n	1.00	11	0	11	0	n	0.88	14	2	14	2	y	ENSMUSG00000036078.17	Sigmar1	chr4	protein_coding	sigma non-opioid intracellular receptor 1
known_NIR_13569	chr4	41756130	41756344	+	41756130	41756347	A3SS	ENSMUST00000084695.11	known	0.27	39	104	39	104	y	0.23	25	84	25	84	y	0.19	19	80	19	80	y	0.20	24	99	24	99	y	0.26	55	153	55	153	y	0.17	13	64	13	64	y	0.21	40	154	40	154	y	0.24	22	68	22	68	y	0.26	36	105	36	105	y	0.21	40	148	40	148	y	0.26	47	132	47	132	y	0.19	29	120	29	120	y	ENSMUSG00000036073.18	Galt	chr4	protein_coding	galactose-1-phosphate uridyl transferase
known_NIR_13570	chr4	41756561	41756939	+	41756561;41756811	41756682;41756939	ES	ENSMUST00000084695.11	known	0.01	1	138.5	1	122;155	n	0.00	0	121.0	0	114;128	n	0.02	2	112.5	2	113;112	y	0.00	0	119.5	0	129;110	n	0.01	2	179.0	2	156;202	y	0.00	0	85.5	0	85;86	n	0.00	0	158.0	0	162;154	n	0.00	0	104.5	0	105;104	n	0.00	0	116.0	0	121;111	n	0.00	0	182.0	0	179;185	n	0.00	0	145.5	0	133;158	n	0.01	2	159.5	2	165;154	y	ENSMUSG00000036073.18	Galt	chr4	protein_coding	galactose-1-phosphate uridyl transferase
known_NIR_13571	chr4	41756561	41756939	+	41756811	41756939	A5SS	ENSMUST00000151490.8	known	0.01	1	155	1	155	n	0.00	0	128	0	128	n	0.02	2	112	2	112	y	0.00	0	110	0	110	n	0.01	2	202	2	202	y	0.00	0	86	0	86	n	0.00	0	154	0	154	n	0.00	0	104	0	104	n	0.00	0	111	0	111	n	0.00	0	185	0	185	n	0.00	0	158	0	158	n	0.01	2	154	2	154	y	ENSMUSG00000036073.18	Galt	chr4	protein_coding	galactose-1-phosphate uridyl transferase
known_NIR_13572	chr4	41762423	41763582	+	41760551	41763582	A5SS	ENSMUST00000098132.11	known	0.14	3	19	3	19	y	0.00	0	18	0	18	n	0.00	0	18	0	18	n	0.00	0	27	0	27	n	0.04	2	46	2	46	y	0.00	0	26	0	26	n	0.00	0	26	0	26	n	0.00	0	13	0	13	n	0.00	0	28	0	28	n	0.00	0	21	0	21	n	0.00	0	18	0	18	n	0.00	0	28	0	28	n	ENSMUSG00000073889.11	Il11ra1	chr4	protein_coding	interleukin 11 receptor, alpha chain 1
known_NIR_13573	chr4	41771213	41773465	-	41771235	41773465	A3SS	ENSMUST00000136768.8	known	0.11	1	8	1	8	n	0.20	2	8	2	8	y	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.33	2	4	2	4	n	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.18	2	9	2	9	y	0.24	4	13	4	13	y	0.19	3	13	3	13	y	0.30	3	7	3	7	y	ENSMUSG00000073888.14	Ccl27a	chr4	protein_coding	chemokine (C-C motif) ligand 27A
known_NIR_13574	chr4	41771213	41773465	-	41771295	41773465	A3SS	ENSMUST00000138337.8	known	0.33	1	2	1	2	n	0.29	2	5	2	5	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	5	0	5	n	1.00	2	0	2	0	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.50	2	2	2	2	n	0.40	4	6	4	6	y	0.33	3	6	3	6	n	0.21	3	11	3	11	y	ENSMUSG00000073888.14	Ccl27a	chr4	protein_coding	chemokine (C-C motif) ligand 27A
known_NIR_13575	chr4	41771235	41773465	-	41771295	41773465	A3SS	ENSMUST00000138337.8	known	0.80	8	2	8	2	y	0.62	8	5	8	5	y	1.00	3	0	3	0	n	0.77	10	3	10	3	y	0.62	8	5	8	5	y	1.00	4	0	4	0	n	0.72	13	5	13	5	y	0.60	3	2	3	2	n	0.82	9	2	9	2	y	0.68	13	6	13	6	y	0.68	13	6	13	6	y	0.39	7	11	7	11	y	ENSMUSG00000073888.14	Ccl27a	chr4	protein_coding	chemokine (C-C motif) ligand 27A
known_NIR_13576	chr4	41771290	41773465	-	41771213	41773465	A3SS	ENSMUST00000151142.8	known	0.83	5	1	5	1	n	0.60	3	2	3	2	n	1.00	1	0	1	0	n	1.00	4	0	4	0	n	1.00	3	0	3	0	n	0.00	0	2	0	2	n	1.00	8	0	8	0	n	-	-	-	-	-	-	0.50	2	2	2	2	n	0.71	10	4	10	4	y	0.00	0	3	0	3	n	0.50	3	3	3	3	n	ENSMUSG00000073888.14	Ccl27a	chr4	protein_coding	chemokine (C-C motif) ligand 27A
known_NIR_13577	chr4	41771290	41773465	-	41771235	41773465	A3SS	ENSMUST00000136768.8	known	0.38	5	8	5	8	y	0.27	3	8	3	8	y	0.25	1	3	1	3	n	0.29	4	10	4	10	y	0.27	3	8	3	8	y	0.00	0	4	0	4	n	0.38	8	13	8	13	y	0.00	0	3	0	3	n	0.18	2	9	2	9	y	0.43	10	13	10	13	y	0.00	0	13	0	13	n	0.30	3	7	3	7	y	ENSMUSG00000073888.14	Ccl27a	chr4	protein_coding	chemokine (C-C motif) ligand 27A
known_NIR_13578	chr4	41771290	41773465	-	41771295	41773465	A3SS	ENSMUST00000138337.8	known	0.71	5	2	5	2	n	0.38	3	5	3	5	n	1.00	1	0	1	0	n	0.57	4	3	4	3	n	0.38	3	5	3	5	n	-	-	-	-	-	-	0.62	8	5	8	5	y	0.00	0	2	0	2	n	0.50	2	2	2	2	n	0.62	10	6	10	6	y	0.00	0	6	0	6	n	0.21	3	11	3	11	y	ENSMUSG00000073888.14	Ccl27a	chr4	protein_coding	chemokine (C-C motif) ligand 27A
known_NIR_13579	chr4	41773350	41773465	-	41771213	41773465	A3SS	ENSMUST00000151142.8	known	0.80	4	1	4	1	n	0.78	7	2	7	2	n	1.00	2	0	2	0	n	1.00	4	0	4	0	n	-	-	-	-	-	-	0.80	8	2	8	2	y	-	-	-	-	-	-	1.00	3	0	3	0	n	0.67	4	2	4	2	n	0.43	3	4	3	4	n	0.57	4	3	4	3	n	0.57	4	3	4	3	n	ENSMUSG00000073888.14	Ccl27a	chr4	protein_coding	chemokine (C-C motif) ligand 27A
known_NIR_13580	chr4	41773350	41773465	-	41771235	41773465	A3SS	ENSMUST00000136768.8	known	0.33	4	8	4	8	y	0.47	7	8	7	8	y	0.40	2	3	2	3	n	0.29	4	10	4	10	y	0.00	0	8	0	8	n	0.67	8	4	8	4	y	0.00	0	13	0	13	n	0.50	3	3	3	3	n	0.31	4	9	4	9	y	0.19	3	13	3	13	y	0.24	4	13	4	13	y	0.36	4	7	4	7	y	ENSMUSG00000073888.14	Ccl27a	chr4	protein_coding	chemokine (C-C motif) ligand 27A
known_NIR_13581	chr4	41773350	41773465	-	41771290	41773465	A3SS	ENSMUST00000155322.8	known	0.44	4	5	4	5	n	0.70	7	3	7	3	y	0.67	2	1	2	1	n	0.50	4	4	4	4	n	0.00	0	3	0	3	n	1.00	8	0	8	0	n	0.00	0	8	0	8	n	1.00	3	0	3	0	n	0.67	4	2	4	2	n	0.23	3	10	3	10	y	1.00	4	0	4	0	n	0.57	4	3	4	3	n	ENSMUSG00000073888.14	Ccl27a	chr4	protein_coding	chemokine (C-C motif) ligand 27A
known_NIR_13582	chr4	41773350	41773465	-	41771295	41773465	A3SS	ENSMUST00000138337.8	known	0.67	4	2	4	2	n	0.58	7	5	7	5	y	1.00	2	0	2	0	n	0.57	4	3	4	3	n	0.00	0	5	0	5	n	1.00	8	0	8	0	n	0.00	0	5	0	5	n	0.60	3	2	3	2	n	0.67	4	2	4	2	n	0.33	3	6	3	6	n	0.40	4	6	4	6	y	0.27	4	11	4	11	y	ENSMUSG00000073888.14	Ccl27a	chr4	protein_coding	chemokine (C-C motif) ligand 27A
known_NIR_13583	chr4	42950004	42953141	+	42950943	42953141	5pMXE	ENSMUST00000153807.2	known	1.00	4	0	4	0	n	0.50	2	2	2	2	n	0.82	9	2	9	2	y	1.00	6	0	6	0	n	0.80	8	2	8	2	y	1.00	2	0	2	0	n	1.00	5	0	5	0	n	-	-	-	-	-	-	1.00	7	0	7	0	n	0.83	5	1	5	1	n	1.00	2	0	2	0	n	1.00	3	0	3	0	n	ENSMUSG00000036052.15	Dnajb5	chr4	protein_coding	DnaJ heat shock protein family (Hsp40) member B5
known_NIR_13584	chr4	43019439	43019647	-	43019435	43019647	A3SS	ENSMUST00000149333.8	known	0.10	4	35	4	35	y	0.04	2	45	2	45	y	0.10	5	47	5	47	y	0.14	7	42	7	42	y	0.12	6	44	6	44	y	0.25	4	12	4	12	y	0.27	10	27	10	27	y	0.03	1	29	1	29	n	0.08	3	34	3	34	y	0.06	3	44	3	44	y	0.11	4	34	4	34	y	0.07	2	26	2	26	y	ENSMUSG00000028454.17	Pigo	chr4	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class O
known_NIR_13585	chr4	43025074	43025286	-	43025074	43025780	A5SS	ENSMUST00000067481.6	known	0.67	10	5	10	5	y	0.73	8	3	8	3	y	0.67	16	8	16	8	y	0.89	16	2	16	2	y	0.43	10	13	10	13	y	0.50	4	4	4	4	n	0.55	11	9	11	9	y	0.85	11	2	11	2	y	0.64	7	4	7	4	y	0.75	18	6	18	6	y	0.67	8	4	8	4	y	0.65	13	7	13	7	y	ENSMUSG00000028454.17	Pigo	chr4	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class O
known_NIR_13586	chr4	43030298	43030971	-	43030298	43030436	5pMXE	ENSMUST00000135660.8	known	0.02	3	171	3	171	y	0.02	3	145	3	145	y	0.00	0	169	0	169	n	0.02	3	193	3	193	y	0.02	4	213	4	213	y	0.01	1	75	1	75	n	0.02	5	200	5	200	y	0.00	0	101	0	101	n	0.02	3	155	3	155	y	0.01	2	238	2	238	y	0.01	2	197	2	197	y	0.02	4	233	4	233	y	ENSMUSG00000028455.16	Stoml2	chr4	protein_coding	stomatin (Epb7.2)-like 2
known_NIR_13587	chr4	43030298	43030971	-	43030298;43030535	43030436;43030971	ES	ENSMUST00000030169.15	known	0.02	3	160.0	3	171;149	y	0.02	3	137.5	3	145;130	y	0.00	0	163.0	0	169;157	n	0.02	3	182.5	3	193;172	y	0.02	4	198.0	4	213;183	y	0.01	1	89.5	1	75;104	n	0.03	5	192.5	5	200;185	y	0.00	0	97.0	0	101;93	n	0.02	3	144.0	3	155;133	y	0.01	2	212.0	2	238;186	y	0.01	2	171.0	2	197;145	y	0.02	4	200.0	4	233;167	y	ENSMUSG00000028455.16	Stoml2	chr4	protein_coding	stomatin (Epb7.2)-like 2
known_NIR_13588	chr4	43034764	43035836	-	43034764;43035001	43034943;43035836	ES	ENSMUST00000107958.8	known	0.00	0	31.0	0	32;30	n	0.00	0	27.5	0	22;33	n	0.06	2	31.0	2	29;33	y	0.00	0	28.5	0	26;31	n	0.00	0	35.0	0	33;37	n	0.00	0	22.5	0	22;23	n	0.00	0	36.5	0	34;39	n	0.00	0	14.0	0	11;17	n	0.00	0	19.5	0	18;21	n	0.00	0	30.5	0	27;34	n	0.00	0	25.0	0	32;18	n	0.00	0	23.5	0	23;24	n	ENSMUSG00000036002.13	Fam214b	chr4	protein_coding	family with sequence similarity 214, member B
known_NIR_13589	chr4	43037206	43039815	-	43037206	43039966	A5SS	ENSMUST00000107958.8	known	0.12	2	14	2	14	y	0.32	6	13	6	13	y	0.05	1	19	1	19	n	0.13	2	13	2	13	y	0.29	5	12	5	12	y	0.00	0	9	0	9	n	0.53	10	9	10	9	y	0.18	2	9	2	9	y	0.00	0	12	0	12	n	0.23	3	10	3	10	y	0.29	2	5	2	5	n	0.25	4	12	4	12	y	ENSMUSG00000036002.13	Fam214b	chr4	protein_coding	family with sequence similarity 214, member B
known_NIR_13590	chr4	43037206	43039815	-	43037206	43045648	A5SS	ENSMUST00000107956.8	known	0.40	2	3	2	3	n	0.75	6	2	6	2	n	0.33	1	2	1	2	n	0.50	2	2	2	2	n	0.33	5	10	5	10	y	0.00	0	3	0	3	n	0.56	10	8	10	8	y	0.67	2	1	2	1	n	0.00	0	6	0	6	n	0.21	3	11	3	11	y	0.29	2	5	2	5	n	0.27	4	11	4	11	y	ENSMUSG00000036002.13	Fam214b	chr4	protein_coding	family with sequence similarity 214, member B
known_NIR_13591	chr4	43037206	43039815	-	43037206	43045807	A5SS	ENSMUST00000107957.8	known	1.00	2	0	2	0	n	1.00	6	0	6	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	n	1.00	5	0	5	0	n	-	-	-	-	-	-	0.83	10	2	10	2	y	1.00	2	0	2	0	n	-	-	-	-	-	-	1.00	3	0	3	0	n	1.00	2	0	2	0	n	1.00	4	0	4	0	n	ENSMUSG00000036002.13	Fam214b	chr4	protein_coding	family with sequence similarity 214, member B
known_NIR_13592	chr4	43037206	43039815	-	43037206	43046104	A5SS	ENSMUST00000036462.12	known	0.40	2	3	2	3	n	1.00	6	0	6	0	n	0.50	1	1	1	1	n	1.00	2	0	2	0	n	0.42	5	7	5	7	y	0.00	0	3	0	3	n	0.83	10	2	10	2	y	1.00	2	0	2	0	n	-	-	-	-	-	-	0.75	3	1	3	1	n	1.00	2	0	2	0	n	1.00	4	0	4	0	n	ENSMUSG00000036002.13	Fam214b	chr4	protein_coding	family with sequence similarity 214, member B
known_NIR_13593	chr4	43037206	43045648	-	43037206	43039966	5pMXE	ENSMUST00000107958.8	known	0.18	3	14	3	14	y	0.13	2	13	2	13	y	0.10	2	19	2	19	y	0.13	2	13	2	13	y	0.45	10	12	10	12	y	0.25	3	9	3	9	y	0.47	8	9	8	9	y	0.10	1	9	1	9	n	0.33	6	12	6	12	y	0.52	11	10	11	10	y	0.50	5	5	5	5	y	0.48	11	12	11	12	y	ENSMUSG00000036002.13	Fam214b	chr4	protein_coding	family with sequence similarity 214, member B
known_NIR_13594	chr4	43037206	43045807	-	43037206	43039966	5pMXE	ENSMUST00000107958.8	known	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.00	0	19	0	19	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.18	2	9	2	9	y	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	ENSMUSG00000036002.13	Fam214b	chr4	protein_coding	family with sequence similarity 214, member B
known_NIR_13595	chr4	43037206	43045807	-	43037206	43045648	5pMXE	ENSMUST00000107956.8	known	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.20	2	8	2	8	y	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	ENSMUSG00000036002.13	Fam214b	chr4	protein_coding	family with sequence similarity 214, member B
known_NIR_13596	chr4	43037206	43046104	-	43037206	43039966	5pMXE	ENSMUST00000107958.8	known	0.18	3	14	3	14	y	0.00	0	13	0	13	n	0.05	1	19	1	19	n	0.00	0	13	0	13	n	0.37	7	12	7	12	y	0.25	3	9	3	9	y	0.18	2	9	2	9	y	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.09	1	10	1	10	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	ENSMUSG00000036002.13	Fam214b	chr4	protein_coding	family with sequence similarity 214, member B
known_NIR_13597	chr4	43037206	43046104	-	43037206	43045648	5pMXE	ENSMUST00000107956.8	known	0.50	3	3	3	3	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.41	7	10	7	10	y	0.50	3	3	3	3	n	0.20	2	8	2	8	y	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.08	1	11	1	11	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	ENSMUSG00000036002.13	Fam214b	chr4	protein_coding	family with sequence similarity 214, member B
known_NIR_13598	chr4	43115160;43161478	43161443;43165744	+	43115160	43165744	cassetteExon	ENSMUST00000207569.2	known	0.00	0.0	1	0;0	1	n	0.11	0.5	4	1;0	4	n	0.05	0.5	9	0;1	9	n	0.00	0.0	2	0;0	2	n	0.00	0.0	13	0;0	13	n	0.17	1.0	5	0;2	5	n	0.00	0.0	3	0;0	3	n	0.38	5.0	8	4;6	8	y	0.00	0.0	4	0;0	4	n	0.00	0.0	6	0;0	6	n	0.00	0.0	9	0;0	9	n	0.00	0.0	7	0;0	7	n	ENSMUSG00000028456.19	Unc13b	chr4	protein_coding	unc-13 homolog B
known_NIR_13599	chr4	43245596	43249460	+	43245596	43249457	A3SS	ENSMUST00000207569.2	known	0.00	0	4	0	4	n	0.11	1	8	1	8	n	0.35	8	15	8	15	y	0.50	1	1	1	1	n	0.31	5	11	5	11	y	0.17	2	10	2	10	y	0.33	6	12	6	12	y	0.50	6	6	6	6	y	0.50	4	4	4	4	n	0.23	3	10	3	10	y	0.50	5	5	5	5	y	0.50	7	7	7	7	y	ENSMUSG00000028456.19	Unc13b	chr4	protein_coding	unc-13 homolog B
known_NIR_13600	chr4	43382199;43413054	43413005;43414628	+	43382199	43414628	cassetteExon	ENSMUST00000035645.12	known	0.00	0.0	11	0;0	11	n	0.00	0.0	2	0;0	2	n	0.19	2.5	11	3;2	11	y	0.00	0.0	11	0;0	11	n	0.11	2.0	16	3;1	16	n	0.00	0.0	3	0;0	3	n	0.11	0.5	4	0;1	4	n	0.00	0.0	2	0;0	2	n	1.00	0.5	0	0;1	0	n	0.17	1.0	5	0;2	5	n	0.00	0.0	7	0;0	7	n	0.00	0.0	5	0;0	5	n	ENSMUSG00000035969.16	Rusc2	chr4	protein_coding	RUN and SH3 domain containing 2
known_NIR_13601	chr4	43449549	43450070	-	43449528	43450070	A3SS	ENSMUST00000098104.10	known	0.25	1	3	1	3	n	0.36	4	7	4	7	y	0.67	8	4	8	4	y	0.25	1	3	1	3	n	0.42	5	7	5	7	y	1.00	4	0	4	0	n	0.18	3	14	3	14	y	1.00	2	0	2	0	n	0.33	1	2	1	2	n	0.20	2	8	2	8	y	0.40	4	6	4	6	y	0.00	0	4	0	4	n	ENSMUSG00000028459.12	Cd72	chr4	protein_coding	CD72 antigen
known_NIR_13602	chr4	43453172	43454242	-	43453172;43453712	43453641;43454242	ES	ENSMUST00000107926.8	known	-	-	-	-	-	-	0.00	0	4.0	0	5;3	n	0.40	3	4.5	3	4;5	y	0.50	2	2.0	2	2;2	n	0.36	2	3.5	2	6;1	n	1.00	1	0.0	1	0;0	n	0.00	0	1.5	0	2;1	n	0.50	1	1.0	1	2;0	n	0.50	3	3.0	3	4;2	n	0.40	2	3.0	2	1;5	n	0.57	2	1.5	2	2;1	n	0.00	0	3.5	0	4;3	n	ENSMUSG00000028459.12	Cd72	chr4	protein_coding	CD72 antigen
known_NIR_13603	chr4	43516003	43518230	-	43514861	43518230	A3SS	ENSMUST00000150262.8	known	0.00	0	21	0	21	n	0.02	1	43	1	43	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	35	0	35	n	0.00	0	7	0	7	n	0.94	1091	66	1091	66	y	0.00	0	13	0	13	n	0.00	0	19	0	19	n	0.00	0	31	0	31	n	0.00	0	34	0	34	n	0.00	0	8	0	8	n	ENSMUSG00000028464.17	Tpm2	chr4	protein_coding	tropomyosin 2, beta
known_NIR_13604	chr4	43518464;43518719	43518644;43519227	-	43518464;43519078	43519003;43519227	MXE	ENSMUST00000030184.12	known	0.08	1.5	16.5	0;3	16;17	n	0.00	0.0	10.5	0;0	9;12	n	0.20	1.5	6.0	2;1	6;6	n	0.12	2.0	14.0	2;2	12;16	y	0.08	2.5	29.5	2;3	35;24	y	0.14	0.5	3.0	1;0	2;4	n	0.96	880.0	38.0	940;820	33;43	y	0.00	0.0	5.5	0;0	4;7	n	0.00	0.0	14.0	0;0	12;16	n	0.07	2.5	35.5	4;1	35;36	n	0.03	0.5	16.5	0;1	16;17	n	0.00	0.0	4.5	0;0	2;7	n	ENSMUSG00000028464.17	Tpm2	chr4	protein_coding	tropomyosin 2, beta
known_NIR_13605	chr4	43518719	43519227	-	43519078	43519227	A3SS	ENSMUST00000150262.8	known	0.15	3	17	3	17	y	0.00	0	12	0	12	n	0.14	1	6	1	6	n	0.11	2	16	2	16	y	0.11	3	24	3	24	y	0.00	0	4	0	4	n	0.95	820	43	820	43	y	0.00	0	7	0	7	n	0.00	0	16	0	16	n	0.03	1	36	1	36	n	0.06	1	17	1	17	n	0.00	0	7	0	7	n	ENSMUSG00000028464.17	Tpm2	chr4	protein_coding	tropomyosin 2, beta
known_NIR_13606	chr4	43559717	43562130	-	43556783	43562130	A3SS	ENSMUST00000030187.14	known	0.35	7	13	7	13	y	0.30	3	7	3	7	y	0.44	11	14	11	14	y	0.28	7	18	7	18	y	0.31	9	20	9	20	y	0.04	1	22	1	22	n	0.21	4	15	4	15	y	0.36	5	9	5	9	y	0.13	2	13	2	13	y	0.24	8	26	8	26	y	0.26	5	14	5	14	y	0.35	7	13	7	13	y	ENSMUSG00000028465.17	Tln1	chr4	protein_coding	talin 1
known_NIR_13607	chr4	43570906	43571189	-	43570911	43571189	A3SS	ENSMUST00000128403.8	known	0.00	0	17	0	17	n	0.00	0	17	0	17	n	-	-	-	-	-	-	0.00	0	16	0	16	n	0.00	0	23	0	23	n	-	-	-	-	-	-	0.00	0	13	0	13	n	0.00	0	1	0	1	n	0.11	2	16	2	16	y	0.12	3	21	3	21	y	0.13	2	13	2	13	y	0.11	2	16	2	16	y	ENSMUSG00000028467.16	Gba2	chr4	protein_coding	glucosidase beta 2
known_NIR_13608	chr4	43579007	43579375	+	43579003	43579375	A5SS	ENSMUST00000107886.9	known	0.26	7	20	7	20	y	0.14	2	12	2	12	y	0.22	5	18	5	18	y	0.21	6	22	6	22	y	0.19	5	21	5	21	y	0.00	0	8	0	8	n	0.36	5	9	5	9	y	0.11	2	17	2	17	y	0.50	8	8	8	8	y	0.18	4	18	4	18	y	0.25	3	9	3	9	y	0.21	4	15	4	15	y	ENSMUSG00000028468.16	Rgp1	chr4	protein_coding	RAB6A GEF compex partner 1
known_NIR_13609	chr4	43579424	43579887	+	43579509	43579887	A5SS	ENSMUST00000107886.9	known	0.15	4	23	4	23	y	0.17	2	10	2	10	y	0.06	2	34	2	34	y	0.10	3	26	3	26	y	0.05	2	40	2	40	y	0.00	0	19	0	19	n	0.00	0	25	0	25	n	0.00	0	18	0	18	n	0.08	1	12	1	12	n	0.15	5	29	5	29	y	0.21	4	15	4	15	y	0.03	1	34	1	34	n	ENSMUSG00000028468.16	Rgp1	chr4	protein_coding	RAB6A GEF compex partner 1
known_NIR_13610	chr4	43641330	43641549	+	43641326	43641549	A5SS	ENSMUST00000030191.15	known	0.20	11	45	11	45	y	0.06	3	47	3	47	y	0.12	3	23	3	23	y	0.05	3	56	3	56	y	0.09	7	70	7	70	y	0.00	0	15	0	15	n	0.03	2	78	2	78	y	0.00	0	20	0	20	n	0.02	1	62	1	62	n	0.10	9	79	9	79	y	0.08	5	57	5	57	y	0.06	3	49	3	49	y	ENSMUSG00000028469.16	Npr2	chr4	protein_coding	natriuretic peptide receptor 2
known_NIR_13611	chr4	43643174	43643606	+	43643174;43643409	43643335;43643606	ES	ENSMUST00000030191.15	known	0.01	1	73.5	1	78;69	n	0.00	0	55.5	0	44;67	n	0.00	0	44.0	0	42;46	n	0.00	0	81.0	0	75;87	n	0.02	2	96.5	2	88;105	y	0.00	0	24.5	0	16;33	n	0.01	1	110.5	1	100;121	n	0.00	0	28.0	0	22;34	n	0.00	0	77.5	0	61;94	n	0.00	0	107.5	0	96;119	n	0.00	0	75.0	0	72;78	n	0.02	1	51.0	1	54;48	n	ENSMUSG00000028469.16	Npr2	chr4	protein_coding	natriuretic peptide receptor 2
known_NIR_13612	chr4	43644200	43644308	+	43644187	43644308	A5SS	ENSMUST00000030191.15	known	0.07	6	79	6	79	y	0.05	4	81	4	81	y	0.06	2	34	2	34	y	0.04	4	88	4	88	y	0.03	3	111	3	111	y	0.09	3	29	3	29	y	0.07	10	136	10	136	y	0.00	0	25	0	25	n	0.07	7	88	7	88	y	0.04	5	114	5	114	y	0.05	4	69	4	69	y	0.03	2	64	2	64	y	ENSMUSG00000028469.16	Npr2	chr4	protein_coding	natriuretic peptide receptor 2
known_NIR_13613	chr4	43654411	43654513	-	43654422	43654513	A3SS	ENSMUST00000151238.8	known	0.99	624	7	624	7	y	0.99	726	7	726	7	y	0.99	445	4	445	4	y	0.99	573	6	573	6	y	0.99	638	6	638	6	y	0.99	288	2	288	2	y	0.99	805	12	805	12	y	1.00	340	0	340	0	n	0.99	588	5	588	5	y	0.99	879	11	879	11	y	0.99	756	8	756	8	y	0.98	710	14	710	14	y	ENSMUSG00000028470.11	Hint2	chr4	protein_coding	histidine triad nucleotide binding protein 2
known_NIR_13614	chr4	43654614	43654716	-	43654585	43654716	A3SS	ENSMUST00000151238.8	known	0.02	11	680	11	680	y	0.01	7	733	7	733	y	0.00	2	498	2	498	y	0.01	7	569	7	569	y	0.01	5	682	5	682	y	0.01	2	266	2	266	y	0.01	6	866	6	866	y	0.01	3	363	3	363	y	0.01	6	604	6	604	y	0.01	11	921	11	921	y	0.00	4	806	4	806	y	0.01	11	750	11	750	y	ENSMUSG00000028470.11	Hint2	chr4	protein_coding	histidine triad nucleotide binding protein 2
known_NIR_13615	chr4	43654790	43654906	-	43654820	43654906	A3SS	ENSMUST00000151238.8	known	0.00	0	791	0	791	n	0.00	0	867	0	867	n	0.00	0	533	0	533	n	0.02	15	738	15	738	y	0.00	0	751	0	751	n	0.00	0	332	0	332	n	0.00	0	1014	0	1014	n	0.00	0	382	0	382	n	0.00	0	665	0	665	n	0.00	0	1147	0	1147	n	0.00	0	902	0	902	n	0.00	0	828	0	828	n	ENSMUSG00000028470.11	Hint2	chr4	protein_coding	histidine triad nucleotide binding protein 2
known_NIR_13616	chr4	44013002	44018813	+	44013008	44018813	A5SS	ENSMUST00000107846.10	known	0.11	27	226	27	226	y	0.12	31	233	31	233	y	0.06	21	305	21	305	y	0.08	21	247	21	247	y	0.06	21	332	21	332	y	0.05	7	144	7	144	y	0.09	31	324	31	324	y	0.07	11	138	11	138	y	0.10	25	221	25	221	y	0.07	32	402	32	402	y	0.06	18	280	18	280	y	0.05	18	351	18	351	y	ENSMUSG00000028478.19	Clta	chr4	protein_coding	clathrin, light polypeptide (Lca)
known_NIR_13617	chr4	44025560;44030268	44030215;44032401	+	44025560	44032401	cassetteExon	ENSMUST00000107846.10	known	0.00	0.0	519	0;0	519	n	0.00	2.0	612	2;2	612	y	0.00	0.0	602	0;0	602	n	0.00	0.0	506	0;0	506	n	0.00	0.0	621	0;0	621	n	0.00	1.5	307	2;1	307	n	0.00	0.5	649	1;0	649	n	0.00	0.0	292	0;0	292	n	0.00	0.0	474	0;0	474	n	0.00	0.0	752	0;0	752	n	0.00	2.0	614	4;0	614	n	0.00	1.5	647	2;1	647	n	ENSMUSG00000028478.19	Clta	chr4	protein_coding	clathrin, light polypeptide (Lca)
known_NIR_13618	chr4	44025560;44031435	44031400;44032401	+	44025560	44032401	cassetteExon	ENSMUST00000107846.10	known	0.00	0.0	519	0;0	519	n	0.00	0.5	612	1;0	612	n	0.00	0.0	602	0;0	602	n	0.00	0.0	506	0;0	506	n	0.00	0.0	621	0;0	621	n	0.00	0.0	307	0;0	307	n	0.02	13.5	649	11;16	649	y	0.00	0.0	292	0;0	292	n	0.00	0.5	474	1;0	474	n	0.00	3.0	752	2;4	752	y	0.00	0.0	614	0;0	614	n	0.00	0.0	647	0;0	647	n	ENSMUSG00000028478.19	Clta	chr4	protein_coding	clathrin, light polypeptide (Lca)
known_NIR_13619	chr4	44041889	44042163	-	44041884	44042163	A3SS	ENSMUST00000030201.14	known	0.02	10	422	10	422	y	0.00	2	544	2	544	y	0.03	6	198	6	198	y	0.01	4	535	4	535	y	0.01	4	577	4	577	y	0.01	1	178	1	178	n	0.02	9	541	9	541	y	0.01	1	188	1	188	n	0.02	6	392	6	392	y	0.00	0	545	0	545	n	0.01	5	429	5	429	y	0.01	6	418	6	418	y	ENSMUSG00000028479.19	Gne	chr4	protein_coding	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase
known_NIR_13620	chr4	44052979	44055205	-	44052983	44055205	A3SS	ENSMUST00000030201.14	known	0.00	0	300	0	300	n	0.00	0	284	0	284	n	0.00	0	185	0	185	n	0.00	0	400	0	400	n	0.00	0	528	0	528	n	0.00	0	123	0	123	n	0.00	0	373	0	373	n	0.00	0	174	0	174	n	0.00	0	330	0	330	n	0.05	23	462	23	462	y	0.07	20	273	20	273	y	0.00	0	370	0	370	n	ENSMUSG00000028479.19	Gne	chr4	protein_coding	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase
known_NIR_13621	chr4	44055357	44066755	-	44055357;44060227	44059776;44066755	ES	ENSMUST00000030201.14	known	0.01	3	210.5	3	209;212	y	0.03	5	189.5	5	189;190	y	0.01	1	124.5	1	107;142	n	0.02	7	317.5	7	266;369	y	0.02	9	398.5	9	380;417	y	0.01	1	102.0	1	98;106	n	0.02	6	295.0	6	295;295	y	0.03	5	139.5	5	123;156	y	0.03	8	232.5	8	203;262	y	0.02	8	366.0	8	352;380	y	0.03	7	201.0	7	216;186	y	0.00	0	300.0	0	259;341	n	ENSMUSG00000028479.19	Gne	chr4	protein_coding	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase
known_NIR_13622	chr4	44055357	44066755	-	44060227	44066755	3pMXE	ENSMUST00000172514.8	known	0.01	3	212	3	212	y	0.03	5	190	5	190	y	0.01	1	142	1	142	n	0.02	7	369	7	369	y	0.02	9	417	9	417	y	0.01	1	106	1	106	n	0.02	6	295	6	295	y	0.03	5	156	5	156	y	0.03	8	262	8	262	y	0.02	8	380	8	380	y	0.04	7	186	7	186	y	0.00	0	341	0	341	n	ENSMUSG00000028479.19	Gne	chr4	protein_coding	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase
known_NIR_13623	chr4	44060227	44066755	-	44060227	44063087	5pMXE	ENSMUST00000173976.2	known	0.95	212	12	212	12	y	0.95	190	11	190	11	y	0.95	142	8	142	8	y	0.95	369	19	369	19	y	0.97	417	13	417	13	y	0.97	106	3	106	3	y	0.92	295	25	295	25	y	0.93	156	11	156	11	y	0.97	262	8	262	8	y	0.93	380	27	380	27	y	0.89	186	22	186	22	y	0.94	341	23	341	23	y	ENSMUSG00000028479.19	Gne	chr4	protein_coding	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase
known_NIR_13624	chr4	44060227;44063146	44063087;44066755	-	44060227	44066755	cassetteExon	ENSMUST00000030201.14	known	0.04	9.5	212	12;7	212	y	0.04	8.0	190	11;5	190	y	0.05	7.0	142	8;6	142	y	0.05	19.0	369	19;19	369	y	0.03	12.0	417	13;11	417	y	0.03	3.0	106	3;3	106	y	0.08	25.0	295	25;25	295	y	0.07	12.0	156	11;13	156	y	0.02	6.5	262	8;5	262	y	0.06	22.5	380	27;18	380	y	0.09	19.0	186	22;16	186	y	0.05	19.0	341	23;15	341	y	ENSMUSG00000028479.19	Gne	chr4	protein_coding	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase
known_NIR_13625	chr4	44063146	44066755	-	44055357	44066755	A3SS	ENSMUST00000133709.8	known	0.70	7	3	7	3	y	0.50	5	5	5	5	y	0.86	6	1	6	1	n	0.73	19	7	19	7	y	0.55	11	9	11	9	y	0.75	3	1	3	1	n	0.81	25	6	25	6	y	0.72	13	5	13	5	y	0.38	5	8	5	8	y	0.69	18	8	18	8	y	0.70	16	7	16	7	y	1.00	15	0	15	0	n	ENSMUSG00000028479.19	Gne	chr4	protein_coding	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase
known_NIR_13626	chr4	44066960	44072388	-	44066960	44072362	A5SS	ENSMUST00000102936.9	known	0.00	0	44	0	44	n	0.00	0	36	0	36	n	0.00	0	16	0	16	n	0.03	3	90	3	90	y	0.00	0	75	0	75	n	0.09	2	21	2	21	y	0.00	0	66	0	66	n	0.00	0	35	0	35	n	0.00	0	58	0	58	n	0.03	3	91	3	91	y	0.00	0	39	0	39	n	0.01	1	68	1	68	n	ENSMUSG00000028479.19	Gne	chr4	protein_coding	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase
known_NIR_13627	chr4	44066960	44072830	-	44066960	44072362	5pMXE	ENSMUST00000102936.9	known	0.06	3	44	3	44	y	0.00	0	36	0	36	n	0.00	0	16	0	16	n	0.08	8	90	8	90	y	0.00	0	75	0	75	n	0.00	0	21	0	21	n	0.06	4	66	4	66	y	0.00	0	35	0	35	n	0.05	3	58	3	58	y	0.04	4	91	4	91	y	0.09	4	39	4	39	y	0.03	2	68	2	68	y	ENSMUSG00000028479.19	Gne	chr4	protein_coding	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase
known_NIR_13628	chr4	44066960	44072830	-	44066960	44072388	5pMXE	ENSMUST00000173383.2	known	1.00	3	0	3	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.73	8	3	8	3	y	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	4	0	4	0	n	-	-	-	-	-	-	1.00	3	0	3	0	n	0.57	4	3	4	3	n	1.00	4	0	4	0	n	0.67	2	1	2	1	n	ENSMUSG00000028479.19	Gne	chr4	protein_coding	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase
known_NIR_13629	chr4	44756696	44761850	+	44756692	44761850	A5SS	ENSMUST00000107824.9	known	0.40	2	3	2	3	n	0.50	2	2	2	2	n	0.11	2	17	2	17	y	0.50	5	5	5	5	y	0.14	1	6	1	6	n	0.11	1	8	1	8	n	0.17	1	5	1	5	n	0.55	6	5	6	5	y	0.14	1	6	1	6	n	0.75	3	1	3	1	n	0.25	2	6	2	6	n	0.25	2	6	2	6	n	ENSMUSG00000035649.18	Zcchc7	chr4	protein_coding	zinc finger, CCHC domain containing 7
known_NIR_13630	chr4	44929235;44929645	44929581;44931036	+	44929235	44931036	cassetteExon	ENSMUST00000107824.9	known	0.04	4.0	86	4;4	86	y	0.02	1.0	48	2;0	48	n	0.04	3.0	76	4;2	76	y	0.00	0.0	35	0;0	35	n	0.06	4.0	58	4;4	58	y	0.02	0.5	28	1;0	28	n	0.04	2.0	51	1;3	51	n	0.02	1.5	61	1;2	61	n	0.01	0.5	44	1;0	44	n	0.00	0.0	44	0;0	44	n	0.04	1.5	35	2;1	35	n	0.00	0.0	58	0;0	58	n	ENSMUSG00000035649.18	Zcchc7	chr4	protein_coding	zinc finger, CCHC domain containing 7
known_NIR_13631	chr4	44981550	44982879	+	44981534	44982879	A5SS	ENSMUST00000045078.13	known	0.01	4	739	4	739	y	0.00	3	671	3	671	y	0.00	3	1328	3	1328	y	0.00	3	836	3	836	y	0.00	6	1225	6	1225	y	0.00	4	855	4	855	y	0.01	8	1317	8	1317	y	0.01	5	816	5	816	y	0.00	2	622	2	622	y	0.00	2	1028	2	1028	y	0.00	0	682	0	682	n	0.00	2	646	2	646	y	ENSMUSG00000035637.15	Grhpr	chr4	protein_coding	glyoxylate reductase/hydroxypyruvate reductase
known_NIR_13632	chr4	44985395	44986291	+	44985395	44986286	A3SS	ENSMUST00000045078.13	known	0.02	15	914	15	914	y	0.01	14	961	14	961	y	0.02	26	1597	26	1597	y	0.02	24	1064	24	1064	y	0.01	21	1611	21	1611	y	0.02	18	921	18	921	y	0.02	30	1660	30	1660	y	0.02	17	919	17	919	y	0.02	18	747	18	747	y	0.02	27	1368	27	1368	y	0.01	12	912	12	912	y	0.01	10	732	10	732	y	ENSMUSG00000035637.15	Grhpr	chr4	protein_coding	glyoxylate reductase/hydroxypyruvate reductase
known_NIR_13633	chr4	44986390;44986926	44986764;44987216	+	44986390	44987216	cassetteExon	ENSMUST00000045078.13	known	0.01	10.5	1140	6;15	1140	y	0.01	7.0	1245	7;7	1245	y	0.00	3.5	1919	3;4	1919	y	0.01	8.5	1214	8;9	1214	y	0.00	5.0	1841	3;7	1841	y	0.01	6.5	1196	5;8	1196	y	0.01	15.5	1948	21;10	1948	y	0.01	7.0	1041	6;8	1041	y	0.00	4.5	929	5;4	929	y	0.00	5.5	1659	5;6	1659	y	0.01	12.5	1031	16;9	1031	y	0.00	3.0	1000	2;4	1000	y	ENSMUSG00000035637.15	Grhpr	chr4	protein_coding	glyoxylate reductase/hydroxypyruvate reductase
known_NIR_13634	chr4	44995386	45010952	-	44995386	45012224	A5SS	ENSMUST00000055028.9	known	0.62	8	5	8	5	y	0.60	3	2	3	2	n	0.00	0	6	0	6	n	0.75	12	4	12	4	y	0.67	10	5	10	5	y	0.70	7	3	7	3	y	0.40	2	3	2	3	n	0.55	6	5	6	5	y	0.33	2	4	2	4	n	0.45	5	6	5	6	y	0.75	6	2	6	2	n	0.64	7	4	7	4	y	ENSMUSG00000049657.10	Zbtb5	chr4	protein_coding	zinc finger and BTB domain containing 5
known_NIR_13635	chr4	45105644	45107917	-	45105644	45106839	A5SS&ES	ENSMUST00000107808.3	known	0.67	2	1	2	1	n	0.22	2	7	2	7	n	0.12	1	7	1	7	n	0.00	0	12	0	12	n	0.09	1	10	1	10	n	0.20	1	4	1	4	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.29	2	5	2	5	n	0.00	0	9	0	9	n	0.12	1	7	1	7	n	0.25	3	9	3	9	y	ENSMUSG00000078713.9	Tomm5	chr4	protein_coding	translocase of outer mitochondrial membrane 5
known_NIR_13636	chr4	45105644	45107917	-	45105644	45107913	A5SS	ENSMUST00000107810.3	known	0.01	2	148	2	148	y	0.02	2	121	2	121	y	0.01	1	73	1	73	n	0.00	0	143	0	143	n	0.01	1	146	1	146	n	0.02	1	60	1	60	n	0.00	0	149	0	149	n	0.00	0	52	0	52	n	0.02	2	92	2	92	y	0.00	0	158	0	158	n	0.01	1	158	1	158	n	0.02	3	124	3	124	y	ENSMUSG00000078713.9	Tomm5	chr4	protein_coding	translocase of outer mitochondrial membrane 5
known_NIR_13637	chr4	45105644;45106888	45106615;45107913	-	45105644	45107913	cassetteExon	ENSMUST00000107810.3	known	0.02	3.0	148	1;5	148	n	0.07	8.5	121	1;16	121	n	0.05	4.0	73	1;7	73	n	0.02	3.5	143	0;7	143	n	0.03	5.0	146	0;10	146	n	0.02	1.0	60	0;2	60	n	0.03	4.0	149	0;8	149	n	0.03	1.5	52	0;3	52	n	0.03	2.5	92	0;5	92	n	0.05	8.0	158	2;14	158	y	0.05	7.5	158	0;15	158	n	0.05	6.0	124	0;12	124	n	ENSMUSG00000078713.9	Tomm5	chr4	protein_coding	translocase of outer mitochondrial membrane 5
known_NIR_13638	chr4	45105644;45106888	45106839;45107913	-	45105644	45107913	cassetteExon	ENSMUST00000107810.3	known	0.02	3.0	148	1;5	148	n	0.09	11.5	121	7;16	121	y	0.09	7.0	73	7;7	73	y	0.06	9.5	143	12;7	143	y	0.06	10.0	146	10;10	146	y	0.05	3.0	60	4;2	60	y	0.05	7.5	149	7;8	149	y	0.08	4.5	52	6;3	52	y	0.05	5.0	92	5;5	92	y	0.07	11.5	158	9;14	158	y	0.07	11.0	158	7;15	158	y	0.08	10.5	124	9;12	124	y	ENSMUSG00000078713.9	Tomm5	chr4	protein_coding	translocase of outer mitochondrial membrane 5
known_NIR_13639	chr4	45297195;45299897	45299747;45300417	+	45297195	45300417	cassetteExon	ENSMUST00000044673.9	known	0.38	2.5	4	0;5	4	n	0.50	2.0	2	0;4	2	n	0.38	3.0	5	2;4	5	y	0.12	1.0	7	0;2	7	n	0.11	0.5	4	0;1	4	n	0.25	1.0	3	0;2	3	n	0.33	2.0	4	0;4	4	n	0.33	1.5	3	1;2	3	n	0.00	0.0	2	0;0	2	n	0.29	2.0	5	0;4	5	n	0.20	1.5	6	0;3	6	n	0.33	1.5	3	1;2	3	n	ENSMUSG00000035601.10	Trmt10b	chr4	protein_coding	tRNA methyltransferase 10B
known_NIR_13640	chr4	45307970	45308450	+	45307970	45308497	A3SS	ENSMUST00000044673.9	known	0.00	0	14	0	14	n	0.16	4	21	4	21	y	0.21	4	15	4	15	y	0.12	3	22	3	22	y	0.00	0	21	0	21	n	0.07	1	14	1	14	n	0.11	3	24	3	24	y	0.00	0	12	0	12	n	0.08	1	12	1	12	n	0.18	3	14	3	14	y	0.23	3	10	3	10	y	0.00	0	14	0	14	n	ENSMUSG00000035601.10	Trmt10b	chr4	protein_coding	tRNA methyltransferase 10B
known_NIR_13641	chr4	45317028	45319550	-	45317028;45317829	45317678;45319550	ES	ENSMUST00000030003.10	known	0.04	2	52.0	2	54;50	y	0.00	0	64.5	0	68;61	n	0.00	0	82.5	0	76;89	n	0.00	0	58.0	0	49;67	n	0.00	0	91.0	0	94;88	n	0.00	0	41.0	0	44;38	n	0.00	0	90.5	0	98;83	n	0.00	0	45.0	0	43;47	n	0.00	0	55.5	0	50;61	n	0.00	0	73.5	0	72;75	n	0.03	2	62.5	2	65;60	y	0.00	0	70.5	0	72;69	n	ENSMUSG00000028322.12	Exosc3	chr4	protein_coding	exosome component 3
known_NIR_13642	chr4	45317028	45319550	-	45317829	45319550	3pMXE	ENSMUST00000130843.2	known	0.04	2	50	2	50	y	0.00	0	61	0	61	n	0.00	0	89	0	89	n	0.00	0	67	0	67	n	0.00	0	88	0	88	n	0.00	0	38	0	38	n	0.00	0	83	0	83	n	0.00	0	47	0	47	n	0.00	0	61	0	61	n	0.00	0	75	0	75	n	0.03	2	60	2	60	y	0.00	0	69	0	69	n	ENSMUSG00000028322.12	Exosc3	chr4	protein_coding	exosome component 3
known_NIR_13643	chr4	45348219	45349537	+	45348219	45370306	A3SS	ENSMUST00000130821.8	known	1.00	13	0	13	0	n	0.89	8	1	8	1	n	0.88	14	2	14	2	y	0.94	16	1	16	1	n	0.96	24	1	24	1	n	1.00	11	0	11	0	n	0.80	16	4	16	4	y	1.00	11	0	11	0	n	1.00	13	0	13	0	n	0.86	18	3	18	3	y	0.92	12	1	12	1	n	1.00	16	0	16	0	n	ENSMUSG00000035572.17	Dcaf10	chr4	protein_coding	DDB1 and CUL4 associated factor 10
known_NIR_13644	chr4	45348219	45370306	+	45348219;45359958	45359761;45370306	ES	ENSMUST00000155551.8	known	0.00	0	21.0	0	17;25	n	0.07	1	14.0	1	9;19	n	0.04	2	46.0	2	33;59	y	0.03	1	28.0	1	18;38	n	0.02	1	45.5	1	35;56	n	0.00	0	28.5	0	26;31	n	0.11	4	33.0	4	20;46	y	0.00	0	30.0	0	26;34	n	0.00	0	25.5	0	16;35	n	0.08	3	36.0	3	27;45	y	0.04	1	26.5	1	17;36	n	0.00	0	29.5	0	21;38	n	ENSMUSG00000035572.17	Dcaf10	chr4	protein_coding	DDB1 and CUL4 associated factor 10
known_NIR_13645	chr4	45348219;45349591	45349537;45359761	+	45348219	45359761	cassetteExon	ENSMUST00000155551.8	known	0.43	13.0	17	13;13	17	y	0.49	8.5	9	8;9	9	y	0.27	12.5	33	14;11	33	y	0.42	13.0	18	16;10	18	y	0.38	21.5	35	24;19	35	y	0.27	9.5	26	11;8	26	y	0.46	17.0	20	16;18	20	y	0.31	11.5	26	11;12	26	y	0.42	11.5	16	13;10	16	y	0.39	17.5	27	18;17	27	y	0.38	10.5	17	12;9	17	y	0.36	12.0	21	16;8	21	y	ENSMUSG00000035572.17	Dcaf10	chr4	protein_coding	DDB1 and CUL4 associated factor 10
known_NIR_13646	chr4	45400179	45408695	-	45400179	45404727	5pMXE	ENSMUST00000151516.2	known	0.00	0	152	0	152	n	0.01	1	123	1	123	n	0.01	2	248	2	248	y	0.00	0	166	0	166	n	0.00	0	158	0	158	n	0.00	0	127	0	127	n	0.01	1	149	1	149	n	0.00	0	101	0	101	n	0.00	0	92	0	92	n	0.00	0	175	0	175	n	0.00	0	76	0	76	n	0.00	0	159	0	159	n	ENSMUSG00000045973.19	Slc25a51	chr4	protein_coding	solute carrier family 25, member 51
known_NIR_13647	chr4	45400179	45408695	-	45400179;45404835	45404727;45408695	ES	ENSMUST00000107796.8	known	0.00	0	97.5	0	152;43	n	0.01	1	78.0	1	123;33	n	0.01	2	151.5	2	248;55	y	0.00	0	112.5	0	166;59	n	0.00	0	100.5	0	158;43	n	0.00	0	77.0	0	127;27	n	0.01	1	99.0	1	149;49	n	0.00	0	59.5	0	101;18	n	0.00	0	59.5	0	92;27	n	0.00	0	112.5	0	175;50	n	0.00	0	50.5	0	76;25	n	0.00	0	107.0	0	159;55	n	ENSMUSG00000045973.19	Slc25a51	chr4	protein_coding	solute carrier family 25, member 51
known_NIR_13648	chr4	45408152	45408695	-	45404835	45408695	A3SS	ENSMUST00000107796.8	known	0.00	0	43	0	43	n	0.00	0	33	0	33	n	0.05	3	55	3	55	y	0.03	2	59	2	59	y	0.00	0	43	0	43	n	0.00	0	27	0	27	n	0.00	0	49	0	49	n	0.10	2	18	2	18	y	0.04	1	27	1	27	n	0.00	0	50	0	50	n	0.00	0	25	0	25	n	0.04	2	55	2	55	y	ENSMUSG00000045973.19	Slc25a51	chr4	protein_coding	solute carrier family 25, member 51
known_NIR_13649	chr4	45458342	45489055	-	45458342	45482548	5pMXE	ENSMUST00000147926.8	known	0.73	166	62	166	62	y	0.73	173	65	173	65	y	0.82	248	54	248	54	y	0.65	153	83	153	83	y	0.73	161	60	161	60	y	0.69	86	38	86	38	y	0.83	199	40	199	40	y	0.77	112	34	112	34	y	0.72	109	43	109	43	y	0.78	171	47	171	47	y	0.81	124	30	124	30	y	0.90	121	13	121	13	y	ENSMUSG00000044813.16	Shb	chr4	protein_coding	src homology 2 domain-containing transforming protein B
known_NIR_13650	chr4	45799169	45802463	+	45799169	45802455	A3SS	ENSMUST00000044384.5	known	0.00	0	91	0	91	n	0.00	0	52	0	52	n	0.00	0	38	0	38	n	0.00	0	124	0	124	n	0.00	0	117	0	117	n	0.00	0	31	0	31	n	0.05	5	101	5	101	y	0.00	0	50	0	50	n	0.05	3	58	3	58	y	0.00	0	61	0	61	n	0.00	0	68	0	68	n	0.06	16	267	16	267	y	ENSMUSG00000035561.6	Aldh1b1	chr4	protein_coding	aldehyde dehydrogenase 1 family, member B1
known_NIR_13651	chr4	45849097	45858147	+	45853366	45858147	A5SS&ES	ENSMUST00000107782.8	known	0.95	199	11	199	11	y	0.92	127	11	127	11	y	0.90	257	28	257	28	y	0.91	199	20	199	20	y	0.92	307	26	307	26	y	0.93	144	11	144	11	y	0.91	192	20	192	20	y	0.93	176	13	176	13	y	0.95	146	8	146	8	y	0.95	225	13	225	13	y	0.92	95	8	95	8	y	0.93	277	20	277	20	y	ENSMUSG00000028327.15	Stra6l	chr4	protein_coding	STRA6-like
known_NIR_13652	chr4	45849097;45853366	45853146;45858147	+	45849097	45858147	cassetteExon	ENSMUST00000107783.8	known	0.03	5.5	199	0;11	199	n	0.04	5.5	127	0;11	127	n	0.06	15.0	257	2;28	257	y	0.05	10.0	199	0;20	199	n	0.04	13.0	307	0;26	307	n	0.05	7.0	144	3;11	144	y	0.05	10.0	192	0;20	192	n	0.04	6.5	176	0;13	176	n	0.03	5.0	146	2;8	146	y	0.03	6.5	225	0;13	225	n	0.05	5.0	95	2;8	95	y	0.03	10.0	277	0;20	277	n	ENSMUSG00000028327.15	Stra6l	chr4	protein_coding	STRA6-like
known_NIR_13653	chr4	45853366;45855629	45855375;45858147	+	45853366	45858147	cassetteExon	ENSMUST00000107782.8	known	0.39	7.0	11	0;14	11	n	0.45	9.0	11	0;18	11	n	0.32	13.0	28	3;23	28	y	0.39	13.0	20	4;22	20	y	0.43	19.5	26	0;39	26	n	0.42	8.0	11	0;16	11	n	0.45	16.5	20	4;29	20	y	0.42	9.5	13	0;19	13	n	0.59	11.5	8	2;21	8	y	0.47	11.5	13	2;21	13	y	0.48	7.5	8	0;15	8	n	0.44	15.5	20	3;28	20	y	ENSMUSG00000028327.15	Stra6l	chr4	protein_coding	STRA6-like
known_NIR_13654	chr4	45855629	45858147	+	45849097	45858147	A5SS	ENSMUST00000107783.8	known	0.07	14	199	14	199	y	0.12	18	127	18	127	y	0.08	23	257	23	257	y	0.10	22	199	22	199	y	0.11	39	307	39	307	y	0.10	16	144	16	144	y	0.13	29	192	29	192	y	0.10	19	176	19	176	y	0.13	21	146	21	146	y	0.09	21	225	21	225	y	0.14	15	95	15	95	y	0.09	28	277	28	277	y	ENSMUSG00000028327.15	Stra6l	chr4	protein_coding	STRA6-like
known_NIR_13655	chr4	45858222	45859971	+	45858222	45859936	A3SS	ENSMUST00000107783.8	known	0.05	11	191	11	191	y	0.08	10	121	10	121	y	0.05	14	264	14	264	y	0.04	10	218	10	218	y	0.06	19	315	19	315	y	0.06	12	173	12	173	y	0.06	14	226	14	226	y	0.06	13	192	13	192	y	0.07	13	180	13	180	y	0.02	4	262	4	262	y	0.04	6	134	6	134	y	0.04	12	273	12	273	y	ENSMUSG00000028327.15	Stra6l	chr4	protein_coding	STRA6-like
known_NIR_13656	chr4	45972436	45987462	+	45965476	45987462	A5SS	ENSMUST00000107777.9	known	1.00	26	0	26	0	n	1.00	10	0	10	0	n	1.00	21	0	21	0	n	1.00	20	0	20	0	n	0.84	26	5	26	5	y	0.92	11	1	11	1	n	0.88	15	2	15	2	y	1.00	9	0	9	0	n	1.00	12	0	12	0	n	0.90	18	2	18	2	y	0.92	11	1	11	1	n	0.94	16	1	16	1	n	ENSMUSG00000035517.18	Tdrd7	chr4	protein_coding	tudor domain containing 7
known_NIR_13657	chr4	45992270	46005117	+	45992270;45994524	45994307;46005117	ES	ENSMUST00000107777.9	known	0.20	4	16.5	4	17;16	y	0.00	0	15.5	0	12;19	n	0.00	0	37.0	0	30;44	n	0.03	1	34.5	1	42;27	n	0.00	0	40.5	0	46;35	n	0.06	1	15.0	1	18;12	n	0.00	0	26.5	0	34;19	n	0.00	0	24.0	0	25;23	n	0.05	1	19.5	1	20;19	n	0.02	1	40.5	1	40;41	n	0.00	0	23.5	0	25;22	n	0.00	0	38.0	0	39;37	n	ENSMUSG00000035517.18	Tdrd7	chr4	protein_coding	tudor domain containing 7
known_NIR_13658	chr4	46026159	46034296	+	46026159;46029807	46029647;46034296	ES	ENSMUST00000107777.9	known	0.00	0	71.5	0	54;89	n	0.00	0	74.5	0	61;88	n	0.05	3	62.0	3	50;74	y	0.00	0	80.0	0	53;107	n	0.03	3	87.0	3	73;101	y	0.00	0	40.0	0	39;41	n	0.01	1	87.5	1	80;95	n	0.04	2	44.0	2	39;49	y	0.00	0	64.0	0	54;74	n	0.00	0	91.5	0	82;101	n	0.00	0	67.0	0	56;78	n	0.00	0	91.5	0	63;120	n	ENSMUSG00000035517.18	Tdrd7	chr4	protein_coding	tudor domain containing 7
known_NIR_13659	chr4	46135591	46138380	-	46135594	46138380	A3SS	ENSMUST00000107772.8	known	0.00	0	9	0	9	n	0.10	1	9	1	9	n	0.25	4	12	4	12	y	0.29	5	12	5	12	y	0.20	1	4	1	4	n	0.12	1	7	1	7	n	0.31	4	9	4	9	y	0.33	2	4	2	4	n	0.00	0	16	0	16	n	0.17	1	5	1	5	n	0.14	1	6	1	6	n	0.38	3	5	3	5	n	ENSMUSG00000035495.16	Tstd2	chr4	protein_coding	thiosulfate sulfurtransferase (rhodanese)-like domain containing 2
known_NIR_13660	chr4	46135594	46138492	-	46135594	46138380	5pMXE	ENSMUST00000107772.8	known	0.10	1	9	1	9	n	0.25	3	9	3	9	y	0.25	4	12	4	12	y	0.29	5	12	5	12	y	0.43	3	4	3	4	n	0.30	3	7	3	7	y	0.10	1	9	1	9	n	0.20	1	4	1	4	n	0.00	0	16	0	16	n	0.58	7	5	7	5	y	0.33	3	6	3	6	n	0.17	1	5	1	5	n	ENSMUSG00000035495.16	Tstd2	chr4	protein_coding	thiosulfate sulfurtransferase (rhodanese)-like domain containing 2
known_NIR_13661	chr4	46175415	46183118	-	46155826	46183118	A3SS	ENSMUST00000058232.11	known	1.00	69	0	69	0	n	1.00	68	0	68	0	n	0.98	98	2	98	2	y	1.00	66	0	66	0	n	1.00	83	0	83	0	n	0.93	40	3	40	3	y	1.00	82	0	82	0	n	1.00	39	0	39	0	n	1.00	47	0	47	0	n	1.00	81	0	81	0	n	0.99	80	1	80	1	n	0.93	54	4	54	4	y	ENSMUSG00000028329.14	Xpa	chr4	protein_coding	xeroderma pigmentosum, complementation group A
known_NIR_13662	chr4	46175415	46183118	-	46175415;46180398	46180207;46183118	ES	ENSMUST00000132358.8	known	0.98	69	1.5	69	0;3	n	0.98	68	1.5	68	1;2	n	0.96	98	4.0	98	4;4	y	0.95	66	3.5	66	1;6	n	0.97	83	2.5	83	2;3	y	0.93	40	3.0	40	2;4	y	0.93	82	6.5	82	4;9	y	0.99	39	0.5	39	0;1	n	0.97	47	1.5	47	1;2	n	0.95	81	4.5	81	4;5	y	0.95	80	4.0	80	3;5	y	0.94	54	3.5	54	5;2	y	ENSMUSG00000028329.14	Xpa	chr4	protein_coding	xeroderma pigmentosum, complementation group A
known_NIR_13663	chr4	46183235	46184281	-	46183235	46184288	A5SS	ENSMUST00000058232.11	known	0.00	0	77	0	77	n	0.08	5	59	5	59	y	0.01	1	85	1	85	n	0.04	2	48	2	48	y	0.00	0	79	0	79	n	0.00	0	41	0	41	n	0.00	0	79	0	79	n	0.02	1	41	1	41	n	0.06	4	64	4	64	y	0.00	0	75	0	75	n	0.08	6	65	6	65	y	0.03	2	77	2	77	y	ENSMUSG00000028329.14	Xpa	chr4	protein_coding	xeroderma pigmentosum, complementation group A
known_NIR_13664	chr4	46387742	46389318	-	46387742	46389322	A5SS	ENSMUST00000151903.8	known	1.00	3	0	3	0	n	1.00	5	0	5	0	n	0.85	11	2	11	2	y	1.00	7	0	7	0	n	1.00	12	0	12	0	n	1.00	3	0	3	0	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.83	5	1	5	1	n	1.00	7	0	7	0	n	1.00	4	0	4	0	n	1.00	10	0	10	0	n	ENSMUSG00000028331.13	Trmo	chr4	protein_coding	tRNA methyltransferase O
known_NIR_13665	chr4	46495767	46521982	-	46510529	46521982	3pMXE	ENSMUST00000102924.3	known	0.02	1	49	1	49	n	0.00	0	55	0	55	n	0.00	0	53	0	53	n	0.00	0	99	0	99	n	0.00	0	80	0	80	n	0.03	1	32	1	32	n	0.03	2	62	2	62	y	0.00	0	62	0	62	n	0.01	1	72	1	72	n	0.00	0	62	0	62	n	0.00	0	53	0	53	n	0.00	0	63	0	63	n	ENSMUSG00000039853.19	Trim14	chr4	protein_coding	tripartite motif-containing 14
known_NIR_13666	chr4	46507427	46510437	-	46495767	46510437	A3SS	ENSMUST00000184112.8	known	0.97	32	1	32	1	n	1.00	53	0	53	0	n	1.00	40	0	40	0	n	0.98	86	2	86	2	y	1.00	67	0	67	0	n	0.95	40	2	40	2	y	1.00	42	0	42	0	n	1.00	46	0	46	0	n	1.00	53	0	53	0	n	0.98	65	1	65	1	n	0.98	44	1	44	1	n	0.98	55	1	55	1	n	ENSMUSG00000039853.19	Trim14	chr4	protein_coding	tripartite motif-containing 14
known_NIR_13667	chr4	46533110	46534488	-	46533110	46535880	A5SS	ENSMUST00000184112.8	known	0.00	0	49	0	49	n	0.00	0	46	0	46	n	0.09	3	30	3	30	y	0.00	0	90	0	90	n	0.05	5	96	5	96	y	0.00	0	29	0	29	n	0.00	0	55	0	55	n	0.00	0	42	0	42	n	0.00	0	58	0	58	n	0.00	0	76	0	76	n	0.00	0	54	0	54	n	0.00	0	63	0	63	n	ENSMUSG00000039853.19	Trim14	chr4	protein_coding	tripartite motif-containing 14
known_NIR_13668	chr4	47279954;47280214	47280149;47280852	+	47279954	47280852	cassetteExon	ENSMUST00000082303.13	known	1.00	10.5	0	7;14	0	n	0.85	11.5	2	14;9	2	y	0.97	28.0	1	30;26	1	n	1.00	23.0	0	22;24	0	n	1.00	16.0	0	20;12	0	n	1.00	21.0	0	22;20	0	n	1.00	22.0	0	24;20	0	n	1.00	18.5	0	22;15	0	n	1.00	18.5	0	24;13	0	n	1.00	18.5	0	18;19	0	n	1.00	13.5	0	16;11	0	n	1.00	12.5	0	14;11	0	n	ENSMUSG00000028339.18	Col15a1	chr4	protein_coding	collagen, type XV, alpha 1
known_NIR_13669	chr4	47383044	47383749	+	47353396	47383749	A5SS	ENSMUST00000007757.15	known	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.18	2	9	2	9	y	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.25	1	3	1	3	n	0.00	0	9	0	9	n	0.43	3	4	3	4	n	0.00	0	5	0	5	n	0.17	1	5	1	5	n	-	-	-	-	-	-	0.00	0	8	0	8	n	ENSMUSG00000007613.16	Tgfbr1	chr4	protein_coding	transforming growth factor, beta receptor I
known_NIR_13670	chr4	47383994	47393259	+	47383994	47393247	A3SS	ENSMUST00000007757.15	known	0.40	4	6	4	6	y	0.00	0	2	0	2	n	0.54	14	12	14	12	y	0.55	12	10	12	10	y	0.58	18	13	18	13	y	0.67	6	3	6	3	n	0.31	4	9	4	9	y	0.40	6	9	6	9	y	1.00	7	0	7	0	n	0.47	9	10	9	10	y	0.80	4	1	4	1	n	0.63	12	7	12	7	y	ENSMUSG00000007613.16	Tgfbr1	chr4	protein_coding	transforming growth factor, beta receptor I
known_NIR_13671	chr4	47472385	47473939	-	47472458	47473939	A3SS	ENSMUST00000044148.3	known	0.00	0	31	0	31	n	0.00	0	27	0	27	n	0.00	0	53	0	53	n	0.14	5	30	5	30	y	0.00	0	54	0	54	n	0.00	0	25	0	25	n	0.04	1	26	1	26	n	0.00	0	38	0	38	n	0.00	0	21	0	21	n	0.00	0	23	0	23	n	0.00	0	23	0	23	n	0.00	0	26	0	26	n	ENSMUSG00000039740.7	Alg2	chr4	protein_coding	asparagine-linked glycosylation 2 (alpha-1,3-mannosyltransferase)
known_NIR_13672	chr4	47474839	47474912	+	47474753	47474912	A5SS	ENSMUST00000065678.6	known	0.00	3	649	3	649	y	0.00	1	758	1	758	n	0.00	0	1295	0	1295	n	0.00	0	627	0	627	n	0.00	0	988	0	988	n	0.00	0	844	0	844	n	0.00	0	862	0	862	n	0.00	1	819	1	819	n	0.00	0	545	0	545	n	0.00	0	878	0	878	n	0.00	0	774	0	774	n	0.00	0	635	0	635	n	ENSMUSG00000053317.12	Sec61b	chr4	protein_coding	Sec61 beta subunit
known_NIR_13673	chr4	48125066	48131765	+	48124958	48131765	A5SS	ENSMUST00000107721.8	known	0.33	3	6	3	6	n	0.47	7	8	7	8	y	0.56	5	4	5	4	n	0.36	9	16	9	16	y	0.35	9	17	9	17	y	0.75	6	2	6	2	n	0.47	7	8	7	8	y	0.23	3	10	3	10	y	0.47	9	10	9	10	y	0.47	8	9	8	9	y	0.40	8	12	8	12	y	0.38	6	10	6	10	y	ENSMUSG00000061455.14	Stx17	chr4	protein_coding	syntaxin 17
known_NIR_13674	chr4	48238366	48241296	-	48236988	48241296	A3SS	ENSMUST00000030028.5	known	0.00	0	171	0	171	n	0.00	0	152	0	152	n	0.00	1	301	1	301	n	0.01	2	194	2	194	y	0.01	2	250	2	250	y	0.01	1	166	1	166	n	0.00	0	176	0	176	n	0.00	1	203	1	203	n	0.01	1	129	1	129	n	0.00	0	195	0	195	n	0.00	0	115	0	115	n	0.00	0	215	0	215	n	ENSMUSG00000028343.11	Erp44	chr4	protein_coding	endoplasmic reticulum protein 44
known_NIR_13675	chr4	48467904	48468754	-	48467904	48468281	A5SS	ENSMUST00000155905.8	known	0.43	6	8	6	8	y	0.50	2	2	2	2	n	0.22	4	14	4	14	y	0.00	0	6	0	6	n	0.44	7	9	7	9	y	0.25	2	6	2	6	n	0.60	6	4	6	4	y	0.23	3	10	3	10	y	0.18	2	9	2	9	y	0.71	5	2	5	2	n	0.50	4	4	4	4	n	0.14	2	12	2	12	y	ENSMUSG00000028345.16	Tex10	chr4	protein_coding	testis expressed gene 10
known_NIR_13676	chr4	49381870	49383086	-	49381924	49383086	A3SS	ENSMUST00000081541.9	known	0.17	21	101	21	101	y	0.22	19	69	19	69	y	0.22	47	165	47	165	y	0.20	18	73	18	73	y	0.31	112	245	112	245	y	0.20	32	132	32	132	y	0.31	63	138	63	138	y	0.30	51	117	51	117	y	0.28	19	48	19	48	y	0.22	15	53	15	53	y	0.22	15	53	15	53	y	0.00	0	20	0	20	n	ENSMUSG00000060317.10	Acnat2	chr4	protein_coding	acyl-coenzyme A amino acid N-acyltransferase 2
known_NIR_13677	chr4	49383576	49405691	-	49383576	49407663	A5SS	ENSMUST00000081541.9	known	0.00	0	17	0	17	n	0.00	0	5	0	5	n	0.23	9	30	9	30	y	0.00	0	8	0	8	n	0.35	8	15	8	15	y	0.23	9	30	9	30	y	0.00	0	16	0	16	n	0.25	7	21	7	21	y	0.33	5	10	5	10	y	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	ENSMUSG00000060317.10	Acnat2	chr4	protein_coding	acyl-coenzyme A amino acid N-acyltransferase 2
known_NIR_13678	chr4	53017207	53021111	+	53017207;53020331	53020182;53021111	ES	ENSMUST00000015391.10	known	0.03	7	268.5	7	230;307	y	0.01	2	248.5	2	228;269	y	0.02	7	331.0	7	310;352	y	0.01	3	256.5	3	247;266	y	0.01	5	369.5	5	352;387	y	0.01	1	175.5	1	141;210	n	0.03	11	333.0	11	326;340	y	0.00	0	180.0	0	178;182	n	0.01	2	215.0	2	185;245	y	0.01	5	388.5	5	364;413	y	0.01	4	265.0	4	240;290	y	0.00	0	334.0	0	308;360	n	ENSMUSG00000015247.11	Nipsnap3b	chr4	protein_coding	nipsnap homolog 3B
known_NIR_13679	chr4	53545768	53553486	+	53545768	53549989	3pMXE	ENSMUST00000107646.9	known	1.00	49	0	49	0	n	0.93	40	3	40	3	y	0.97	137	4	137	4	y	0.98	65	1	65	1	n	1.00	125	0	125	0	n	0.98	86	2	86	2	y	1.00	70	0	70	0	n	1.00	98	0	98	0	n	0.98	55	1	55	1	n	0.98	91	2	91	2	y	0.93	41	3	41	3	y	0.99	91	1	91	1	n	ENSMUSG00000028412.18	Slc44a1	chr4	protein_coding	solute carrier family 44, member 1
known_NIR_13680	chr4	53563221	53565397	+	53563221	53621595	A3SS	ENSMUST00000102911.10	known	0.63	33	19	33	19	y	0.75	38	13	38	13	y	0.78	92	26	92	26	y	0.78	51	14	51	14	y	0.63	57	33	57	33	y	0.69	37	17	37	17	y	0.71	67	28	67	28	y	0.78	59	17	59	17	y	0.71	34	14	34	14	y	0.73	53	20	53	20	y	0.64	23	13	23	13	y	0.80	59	15	59	15	y	ENSMUSG00000028412.18	Slc44a1	chr4	protein_coding	solute carrier family 44, member 1
known_NIR_13681	chr4	53596373	53621595	+	53563221	53621595	A5SS	ENSMUST00000102911.10	known	0.14	3	19	3	19	y	0.41	9	13	9	13	y	0.53	29	26	29	26	y	0.30	6	14	6	14	y	0.33	16	33	16	33	y	0.53	19	17	19	17	y	0.20	7	28	7	28	y	0.32	8	17	8	17	y	0.30	6	14	6	14	y	0.46	17	20	17	20	y	0.32	6	13	6	13	y	0.29	6	15	6	15	y	ENSMUSG00000028412.18	Slc44a1	chr4	protein_coding	solute carrier family 44, member 1
known_NIR_13682	chr4	53720209;53724742	53724605;53729980	+	53720209	53729980	cassetteExon	ENSMUST00000128667.8	known	0.20	1.5	6	1;2	6	n	0.50	1.0	1	1;1	1	n	0.09	0.5	5	0;1	5	n	0.20	1.0	4	0;2	4	n	0.54	3.5	3	4;3	3	y	0.17	2.5	12	4;1	12	n	0.33	3.0	6	4;2	6	y	0.08	0.5	6	0;1	6	n	0.78	3.5	1	4;3	1	n	0.41	3.5	5	4;3	5	y	0.11	0.5	4	1;0	4	n	0.14	0.5	3	0;1	3	n	ENSMUSG00000028414.18	Fktn	chr4	protein_coding	fukutin
known_NIR_13683	chr4	53826220	53827293	+	53826220	53840627	A3SS	ENSMUST00000030127.13	known	0.01	1	181	1	181	n	0.03	4	134	4	134	y	0.01	2	222	2	222	y	0.03	6	176	6	176	y	0.01	3	255	3	255	y	0.02	3	125	3	125	y	0.03	7	247	7	247	y	0.00	0	163	0	163	n	0.02	3	125	3	125	y	0.02	4	214	4	214	y	0.02	3	138	3	138	y	0.01	2	223	2	223	y	ENSMUSG00000028420.14	Tmem38b	chr4	protein_coding	transmembrane protein 38B
known_NIR_13684	chr4	53840783	53847477	+	53840783	53848866	A3SS	ENSMUST00000030127.13	known	0.02	3	193	3	193	y	0.01	2	218	2	218	y	0.02	6	309	6	309	y	0.01	3	219	3	219	y	0.00	0	323	0	323	n	0.00	0	150	0	150	n	0.01	3	416	3	416	y	0.00	0	197	0	197	n	0.00	0	163	0	163	n	0.01	3	302	3	302	y	0.01	2	205	2	205	y	0.00	1	289	1	289	n	ENSMUSG00000028420.14	Tmem38b	chr4	protein_coding	transmembrane protein 38B
known_NIR_13685	chr4	55350250	55366777	+	55350427	55366777	A5SS	ENSMUST00000030134.9	known	0.01	4	263	4	263	y	0.05	8	155	8	155	y	0.05	15	316	15	316	y	0.03	9	304	9	304	y	0.04	15	355	15	355	y	0.05	9	157	9	157	y	0.04	11	282	11	282	y	0.03	6	173	6	173	y	0.04	7	187	7	187	y	0.05	15	297	15	297	y	0.04	11	236	11	236	y	0.02	8	316	8	316	y	ENSMUSG00000028426.11	Rad23b	chr4	protein_coding	RAD23 homolog B, nucleotide excision repair protein
known_NIR_13686	chr4	56802726	56803508	+	56802726	56803596	A3SS	ENSMUST00000045368.12	known	0.67	6	3	6	3	n	0.17	1	5	1	5	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.67	8	4	8	4	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	ENSMUSG00000038827.12	Abitram	chr4	protein_coding	actin binding transcription modulator
known_NIR_13687	chr4	56826383	56827252	-	56826424	56827252	A3SS	ENSMUST00000045142.15	known	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.20	2	8	2	8	y	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	2	0	2	n	0.00	0	18	0	18	n	ENSMUSG00000038816.15	Ctnnal1	chr4	protein_coding	catenin (cadherin associated protein), alpha-like 1
known_NIR_13688	chr4	56899428	56903918	-	56899428	56903212	A5SS&ES	ENSMUST00000155625.2	known	0.00	0	5	0	5	n	1.00	1	0	1	0	n	0.73	8	3	8	3	y	0.50	2	2	2	2	n	1.00	4	0	4	0	n	0.50	4	4	4	4	n	0.50	1	1	1	1	n	0.82	9	2	9	2	y	1.00	3	0	3	0	n	0.67	6	3	6	3	n	1.00	1	0	1	0	n	0.38	3	5	3	5	n	ENSMUSG00000055296.15	Tmem245	chr4	protein_coding	transmembrane protein 245
known_NIR_13689	chr4	56899428;56903247	56903212;56903918	-	56899428	56903918	cassetteExon	ENSMUST00000068792.13	known	1.00	3.5	0	5;2	0	n	0.00	0.0	1	0;0	1	n	0.30	3.5	8	3;4	8	y	0.43	1.5	2	2;1	2	n	0.00	0.0	4	0;0	4	n	0.50	4.0	4	4;4	4	y	0.50	1.0	1	1;1	1	n	0.14	1.5	9	2;1	9	n	0.00	0.0	3	0;0	3	n	0.25	2.0	6	3;1	6	n	0.50	1.0	1	0;2	1	n	0.60	4.5	3	5;4	3	y	ENSMUSG00000055296.15	Tmem245	chr4	protein_coding	transmembrane protein 245
known_NIR_13690	chr4	57068338	57070309	-	57068338	57071052	A5SS	ENSMUST00000095076.10	known	0.01	1	145	1	145	n	0.00	0	159	0	159	n	0.02	2	129	2	129	y	0.00	1	224	1	224	n	0.01	2	283	2	283	y	0.00	0	69	0	69	n	0.01	2	245	2	245	y	0.01	1	139	1	139	n	0.00	0	149	0	149	n	0.01	3	271	3	271	y	0.00	0	215	0	215	n	0.00	0	198	0	198	n	ENSMUSG00000028434.13	Epb41l4b	chr4	protein_coding	erythrocyte membrane protein band 4.1 like 4b
known_NIR_13691	chr4	57076603	57077164	-	57076603;57077002	57076914;57077164	ES	ENSMUST00000095076.10	known	0.03	4	138.5	4	167;110	y	0.01	2	139.0	2	151;127	y	0.03	4	125.5	4	124;127	y	0.02	4	201.5	4	211;192	y	0.02	4	247.0	4	264;230	y	0.02	2	96.0	2	104;88	y	0.01	3	248.0	3	277;219	y	0.02	2	125.5	2	132;119	y	0.03	4	145.5	4	165;126	y	0.03	8	283.0	8	294;272	y	0.01	2	190.5	2	217;164	y	0.01	3	211.5	3	225;198	y	ENSMUSG00000028434.13	Epb41l4b	chr4	protein_coding	erythrocyte membrane protein band 4.1 like 4b
known_NIR_13692	chr4	57103528	57138028	-	57103528	57142848	A5SS	ENSMUST00000095076.10	known	0.00	0	84	0	84	n	0.00	0	73	0	73	n	0.00	0	90	0	90	n	0.00	0	105	0	105	n	0.00	0	155	0	155	n	0.00	0	60	0	60	n	0.00	0	141	0	141	n	0.00	0	78	0	78	n	0.00	0	89	0	89	n	0.00	0	164	0	164	n	0.00	0	103	0	103	n	0.02	2	129	2	129	y	ENSMUSG00000028434.13	Epb41l4b	chr4	protein_coding	erythrocyte membrane protein band 4.1 like 4b
known_NIR_13693	chr4	57270177	57300281	-	57270177	57301672	A5SS	ENSMUST00000075637.11	known	1.00	5	0	5	0	n	0.67	8	4	8	4	y	0.86	12	2	12	2	y	0.65	15	8	15	8	y	0.88	21	3	21	3	y	1.00	5	0	5	0	n	0.89	16	2	16	2	y	0.00	0	6	0	6	n	0.73	8	3	8	3	y	0.88	21	3	21	3	y	1.00	8	0	8	0	n	0.69	20	9	20	9	y	ENSMUSG00000038764.15	Ptpn3	chr4	protein_coding	protein tyrosine phosphatase, non-receptor type 3
known_NIR_13694	chr4	57270177	57300593	-	57270177	57300281	5pMXE	ENSMUST00000153926.8	known	0.50	5	5	5	5	y	0.50	8	8	8	8	y	0.20	3	12	3	12	y	0.46	13	15	13	15	y	0.42	15	21	15	21	y	0.44	4	5	4	5	n	0.33	8	16	8	16	y	1.00	15	0	15	0	n	0.33	4	8	4	8	y	0.28	8	21	8	21	y	0.33	4	8	4	8	y	0.23	6	20	6	20	y	ENSMUSG00000038764.15	Ptpn3	chr4	protein_coding	protein tyrosine phosphatase, non-receptor type 3
known_NIR_13695	chr4	57270177	57300593	-	57270177	57301672	A5SS	ENSMUST00000075637.11	known	1.00	5	0	5	0	n	0.67	8	4	8	4	y	0.60	3	2	3	2	n	0.62	13	8	13	8	y	0.83	15	3	15	3	y	1.00	4	0	4	0	n	0.80	8	2	8	2	y	0.71	15	6	15	6	y	0.57	4	3	4	3	n	0.73	8	3	8	3	y	1.00	4	0	4	0	n	0.40	6	9	6	9	y	ENSMUSG00000038764.15	Ptpn3	chr4	protein_coding	protein tyrosine phosphatase, non-receptor type 3
known_NIR_13696	chr4	57845306	57854562	+	57782322	57854562	A5SS	ENSMUST00000124581.2	known	1.00	2	0	2	0	n	0.33	1	2	1	2	n	0.36	5	9	5	9	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038729.25	Pakap	chr4	protein_coding	paralemmin A kinase anchor protein
known_NIR_13697	chr4	57857037	57892869	+	57857037;57883202	57883024;57892869	ES	ENSMUST00000107600.8	known	1.00	3	0.0	3	0;0	n	1.00	1	0.0	1	0;0	n	0.81	39	9.0	39	7;11	y	1.00	4	0.0	4	0;0	n	0.92	12	1.0	12	2;0	n	0.67	14	7.0	14	6;8	y	0.46	3	3.5	3	4;3	y	1.00	5	0.0	5	0;0	n	0.67	1	0.5	1	1;0	n	1.00	4	0.0	4	0;0	n	0.73	4	1.5	4	2;1	n	0.40	1	1.5	1	2;1	n	ENSMUSG00000038729.25	Pakap	chr4	protein_coding	paralemmin A kinase anchor protein
known_NIR_13698	chr4	58860968	58861525	-	58853736	58861525	A3SS	ENSMUST00000102889.10	known	0.00	0	32	0	32	n	0.00	0	24	0	24	n	0.04	3	70	3	70	y	0.00	0	52	0	52	n	0.01	1	93	1	93	n	0.00	0	35	0	35	n	0.00	0	75	0	75	n	0.00	0	49	0	49	n	0.05	2	41	2	41	y	0.00	0	78	0	78	n	0.00	0	33	0	33	n	0.01	1	83	1	83	n	ENSMUSG00000050812.19	Ecpas	chr4	protein_coding	Ecm29 proteasome adaptor and scaffold
known_NIR_13699	chr4	58885498	58911869	-	58885498	58905004	A5SS&ES	ENSMUST00000144512.8	known	0.33	1	2	1	2	n	0.00	0	8	0	8	n	0.13	2	13	2	13	y	0.41	7	10	7	10	y	0.15	3	17	3	17	y	0.09	1	10	1	10	n	0.11	2	16	2	16	y	0.17	2	10	2	10	y	0.00	0	11	0	11	n	0.06	1	17	1	17	n	0.25	1	3	1	3	n	0.09	1	10	1	10	n	ENSMUSG00000050812.19	Ecpas	chr4	protein_coding	Ecm29 proteasome adaptor and scaffold
known_NIR_13700	chr4	58885498	58911869	-	58885498	58912476	A5SS	ENSMUST00000102889.10	known	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.40	2	3	2	3	n	0.50	7	7	7	7	y	0.33	3	6	3	6	n	0.17	1	5	1	5	n	0.25	2	6	2	6	n	0.29	2	5	2	5	n	0.00	0	3	0	3	n	0.14	1	6	1	6	n	0.50	1	1	1	1	n	0.10	1	9	1	9	n	ENSMUSG00000050812.19	Ecpas	chr4	protein_coding	Ecm29 proteasome adaptor and scaffold
known_NIR_13701	chr4	58885498	58911869	-	58885498;58905107	58905004;58911869	ES	ENSMUST00000149301.8	known	0.40	1	1.5	1	2;1	n	0.00	0	4.0	0	8;0	n	0.22	2	7.0	2	13;1	n	0.50	7	7.0	7	10;4	y	0.24	3	9.5	3	17;2	y	0.12	1	7.5	1	10;5	n	0.19	2	8.5	2	16;1	n	0.25	2	6.0	2	10;2	y	0.00	0	7.0	0	11;3	n	0.08	1	11.0	1	17;5	n	0.40	1	1.5	1	3;0	n	0.14	1	6.0	1	10;2	n	ENSMUSG00000050812.19	Ecpas	chr4	protein_coding	Ecm29 proteasome adaptor and scaffold
known_NIR_13702	chr4	58885498;58905107	58905004;58912476	-	58885498	58912476	cassetteExon	ENSMUST00000102889.10	known	0.33	2.0	4	2;2	4	n	0.68	6.5	3	8;5	3	y	0.79	11.5	3	13;10	3	y	0.55	8.5	7	10;7	7	y	0.68	12.5	6	17;8	6	y	0.57	6.5	5	10;3	5	y	0.64	10.5	6	16;5	6	y	0.55	6.0	5	10;2	5	y	0.68	6.5	3	11;2	3	y	0.69	13.5	6	17;10	6	y	0.67	2.0	1	3;1	1	n	0.44	7.0	9	10;4	9	y	ENSMUSG00000050812.19	Ecpas	chr4	protein_coding	Ecm29 proteasome adaptor and scaffold
known_NIR_13703	chr4	58905107	58912476	-	58905107	58911869	5pMXE	ENSMUST00000149301.8	known	0.67	2	1	2	1	n	1.00	5	0	5	0	n	0.91	10	1	10	1	n	0.64	7	4	7	4	y	0.80	8	2	8	2	y	0.38	3	5	3	5	n	0.83	5	1	5	1	n	0.50	2	2	2	2	n	0.40	2	3	2	3	n	0.67	10	5	10	5	y	1.00	1	0	1	0	n	0.67	4	2	4	2	n	ENSMUSG00000050812.19	Ecpas	chr4	protein_coding	Ecm29 proteasome adaptor and scaffold
known_NIR_13704	chr4	59003557	59017670	+	59013855	59017670	A5SS&ES	ENSMUST00000152199.9	known	0.91	51	5	51	5	y	0.92	35	3	35	3	y	0.86	67	11	67	11	y	0.80	65	16	65	16	y	0.83	86	18	86	18	y	0.85	55	10	55	10	y	0.88	67	9	67	9	y	0.89	56	7	56	7	y	0.88	38	5	38	5	y	0.88	72	10	72	10	y	0.87	54	8	54	8	y	0.84	68	13	68	13	y	ENSMUSG00000070972.14	Dnajc25	chr4	protein_coding	DnaJ heat shock protein family (Hsp40) member C25
known_NIR_13705	chr4	59003557;59013855	59013632;59017670	+	59003557	59017670	cassetteExon	ENSMUST00000095070.4	known	0.07	4.0	51	3;5	51	y	0.11	4.5	35	6;3	35	y	0.11	8.5	67	6;11	67	y	0.16	12.0	65	8;16	65	y	0.12	12.0	86	6;18	86	y	0.10	6.0	55	2;10	55	y	0.09	6.5	67	4;9	67	y	0.08	5.0	56	3;7	56	y	0.14	6.0	38	7;5	38	y	0.08	6.5	72	3;10	72	y	0.08	5.0	54	2;8	54	y	0.11	8.5	68	4;13	68	y	ENSMUSG00000070972.14	Dnajc25	chr4	protein_coding	DnaJ heat shock protein family (Hsp40) member C25
known_NIR_13706	chr4	59485731	59488111	-	59485746	59488111	A3SS	ENSMUST00000030076.12	known	0.00	0	49	0	49	n	0.00	0	20	0	20	n	0.00	0	60	0	60	n	0.07	4	56	4	56	y	0.00	0	77	0	77	n	0.00	0	48	0	48	n	0.00	0	42	0	42	n	0.00	0	26	0	26	n	0.00	0	31	0	31	n	0.04	3	72	3	72	y	0.00	0	37	0	37	n	0.00	0	53	0	53	n	ENSMUSG00000028382.16	Ptbp3	chr4	protein_coding	polypyrimidine tract binding protein 3
known_NIR_13707	chr4	59517755	59524404	-	59517755	59524395	A5SS	ENSMUST00000030076.12	known	0.00	0	23	0	23	n	0.08	1	12	1	12	n	0.05	2	38	2	38	y	0.07	2	25	2	25	y	0.08	4	44	4	44	y	0.11	3	24	3	24	y	0.15	4	22	4	22	y	0.00	0	20	0	20	n	0.12	3	21	3	21	y	0.19	10	43	10	43	y	0.29	4	10	4	10	y	0.21	8	30	8	30	y	ENSMUSG00000028382.16	Ptbp3	chr4	protein_coding	polypyrimidine tract binding protein 3
known_NIR_13708	chr4	59524476	59549148	-	59546182	59549148	A3SS&ES	ENSMUST00000173884.8	known	0.88	14	2	14	2	y	0.89	8	1	8	1	n	0.76	25	8	25	8	y	0.85	17	3	17	3	y	0.79	27	7	27	7	y	0.82	18	4	18	4	y	0.92	24	2	24	2	y	0.93	26	2	26	2	y	0.90	18	2	18	2	y	0.72	18	7	18	7	y	0.71	5	2	5	2	n	0.90	27	3	27	3	y	ENSMUSG00000028382.16	Ptbp3	chr4	protein_coding	polypyrimidine tract binding protein 3
known_NIR_13709	chr4	59524476;59546182	59546149;59549148	-	59524476	59549148	cassetteExon	ENSMUST00000030076.12	known	0.07	1.0	14	0;2	14	n	0.06	0.5	8	0;1	8	n	0.22	7.0	25	6;8	25	y	0.17	3.5	17	4;3	17	y	0.16	5.0	27	3;7	27	y	0.20	4.5	18	5;4	18	y	0.04	1.0	24	0;2	24	n	0.04	1.0	26	0;2	26	n	0.12	2.5	18	3;2	18	y	0.35	9.5	18	12;7	18	y	0.17	1.0	5	0;2	5	n	0.10	3.0	27	3;3	27	y	ENSMUSG00000028382.16	Ptbp3	chr4	protein_coding	polypyrimidine tract binding protein 3
known_NIR_13710	chr4	59775549	59783728	-	59775549;59782334	59782254;59783728	ES	ENSMUST00000095063.11	known	0.50	3	3.0	3	3;3	n	0.00	0	2.0	0	3;1	n	0.58	7	5.0	7	4;6	y	0.50	4	4.0	4	4;4	y	0.55	8	6.5	8	5;8	y	0.33	1	2.0	1	3;1	n	0.55	6	5.0	6	7;3	y	0.55	3	2.5	3	5;0	n	0.55	3	2.5	3	3;2	n	0.00	0	1.5	0	1;2	n	0.00	0	1.5	0	1;2	n	0.20	1	4.0	1	4;4	n	ENSMUSG00000038544.15	Inip	chr4	protein_coding	INTS3 and NABP interacting protein
known_NIR_13711	chr4	59775549	59783728	-	59782334	59783728	3pMXE	ENSMUST00000138097.2	known	0.50	3	3	3	3	n	0.00	0	1	0	1	n	0.54	7	6	7	6	y	0.50	4	4	4	4	n	0.50	8	8	8	8	y	0.50	1	1	1	1	n	0.67	6	3	6	3	n	1.00	3	0	3	0	n	0.60	3	2	3	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	ENSMUSG00000038544.15	Inip	chr4	protein_coding	INTS3 and NABP interacting protein
known_NIR_13712	chr4	60067555	60067720	-	60067596	60067720	A3SS	ENSMUST00000166098.8	known	1.00	1907	0	1907	0	n	1.00	1552	0	1552	0	n	1.00	1839	0	1839	0	n	1.00	3578	0	3578	0	n	1.00	2918	0	2918	0	n	1.00	1114	0	1114	0	n	1.00	2501	4	2501	4	y	1.00	1117	0	1117	0	n	1.00	3375	0	3375	0	n	1.00	2350	8	2350	8	y	1.00	3404	10	3404	10	y	1.00	936	0	936	0	n	ENSMUSG00000073842.11	Mup7	chr4	protein_coding	major urinary protein 7
known_NIR_13713	chr4	60068971	60069733	-	60068974	60069733	A3SS	ENSMUST00000166098.8	known	0.04	3625	97103	3625	97103	y	0.04	2431	60944	2431	60944	y	0.04	3741	101673	3741	101673	y	0.04	5072	136384	5072	136384	y	0.03	5307	149377	5307	149377	y	0.04	2344	58303	2344	58303	y	0.04	4206	114068	4206	114068	y	0.03	2219	64245	2219	64245	y	0.04	5385	144416	5385	144416	y	0.04	3721	97541	3721	97541	y	0.04	5455	140996	5455	140996	y	0.04	1445	35780	1445	35780	y	ENSMUSG00000073842.11	Mup7	chr4	protein_coding	major urinary protein 7
known_NIR_13714	chr4	60139352	60140650	-	60139352	60139691	5pMXE	ENSMUST00000074700.9	known	0.02	27	1744	27	1744	y	0.01	9	1084	9	1084	y	0.00	0	1677	0	1677	n	0.02	70	2748	70	2748	y	0.00	5	2638	5	2638	y	0.00	0	1412	0	1412	n	0.00	5	1991	5	1991	y	0.00	1	918	1	918	n	0.03	70	2686	70	2686	y	0.03	56	1761	56	1761	y	0.02	70	2754	70	2754	y	0.06	29	421	29	421	y	ENSMUSG00000078688.12	Mup2	chr4	protein_coding	major urinary protein 2
known_NIR_13715	chr4	60219707	60219872	-	60219748	60219872	A3SS	ENSMUST00000163931.8	known	1.00	1938	0	1938	0	n	0.99	1837	15	1837	15	y	1.00	1628	0	1628	0	n	1.00	2634	7	2634	7	y	1.00	2600	0	2600	0	n	1.00	1140	5	1140	5	y	1.00	2369	0	2369	0	n	1.00	897	0	897	0	n	0.99	2855	18	2855	18	y	1.00	2763	0	2763	0	n	0.99	3631	25	3631	25	y	1.00	1062	0	1062	0	n	ENSMUSG00000078687.10	Mup8	chr4	protein_coding	major urinary protein 8
known_NIR_13716	chr4	60375173	60375296	-	60375132	60375296	A3SS	ENSMUST00000122381.8	known	0.00	9	2120	9	2120	y	0.01	12	2016	12	2016	y	0.00	0	1862	0	1862	n	0.00	0	2762	0	2762	n	0.00	6	2876	6	2876	y	0.00	0	1316	0	1316	n	0.01	21	2622	21	2622	y	0.01	7	1062	7	1062	y	0.00	0	2922	0	2922	n	0.00	13	3021	13	3021	y	0.01	25	4071	25	4071	y	0.00	0	1149	0	1149	n	ENSMUSG00000078686.12	Mup9	chr4	protein_coding	major urinary protein 9
known_NIR_13717	chr4	60376559	60377790	-	60376559;60377451	60377318;60377790	ES	ENSMUST00000122381.8	known	0.01	41	4915.0	41	8192;1638	y	0.01	51	4172.5	51	7189;1156	y	0.00	7	4375.5	7	6982;1769	y	0.01	56	8255.0	56	13685;2825	y	0.00	25	6149.0	25	9620;2678	y	0.00	0	3229.0	0	5171;1287	n	0.00	20	5913.5	20	9785;2042	y	0.00	1	2600.0	1	4165;1035	n	0.01	69	7386.5	69	12217;2556	y	0.01	93	7474.5	93	12786;2163	y	0.01	83	9134.0	83	15371;2897	y	0.01	18	2394.0	18	4079;709	y	ENSMUSG00000078686.12	Mup9	chr4	protein_coding	major urinary protein 9
known_NIR_13718	chr4	60376742	60377318	-	60376559	60377318	A3SS	ENSMUST00000122381.8	known	0.00	0	8192	0	8192	n	0.00	0	7189	0	7189	n	0.00	0	6982	0	6982	n	0.00	13	13685	13	13685	y	0.00	3	9620	3	9620	y	0.00	0	5171	0	5171	n	0.00	17	9785	17	9785	y	0.00	0	4165	0	4165	n	0.00	16	12217	16	12217	y	0.00	0	12786	0	12786	n	0.00	21	15371	21	15371	y	0.00	2	4079	2	4079	y	ENSMUSG00000078686.12	Mup9	chr4	protein_coding	major urinary protein 9
known_NIR_13719	chr4	60455141	60455265	-	60455100	60455265	A3SS	ENSMUST00000103012.10	known	0.00	0	1872	0	1872	n	0.00	0	1742	0	1742	n	0.00	0	1806	0	1806	n	0.00	0	2382	0	2382	n	0.00	3	2676	3	2676	y	0.00	0	1184	0	1184	n	0.00	0	2471	0	2471	n	0.00	0	1009	0	1009	n	0.00	0	2865	0	2865	n	0.00	0	2612	0	2612	n	0.00	0	3491	0	3491	n	0.00	2	1037	2	1037	y	ENSMUSG00000078683.10	Mup1	chr4	protein_coding	major urinary protein 1
known_NIR_13720	chr4	60475541	60475883	+	60475541	60476975	A3SS	ENSMUST00000156693.2	known	0.29	2	5	2	5	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.27	3	8	3	8	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.20	2	8	2	8	y	0.00	0	6	0	6	n	0.30	3	7	3	7	y	0.20	2	8	2	8	y	ENSMUSG00000086253.2	Gm13773	chr4	lncRNA	predicted gene 13773
known_NIR_13721	chr4	60616960	60618201	-	60616960;60617862	60617729;60618201	ES	ENSMUST00000098046.10	known	0.01	10	1380.5	10	739;2022	y	0.01	8	1103.0	8	529;1677	y	0.00	0	1245.0	0	795;1695	n	0.01	12	2226.5	12	1302;3151	y	0.00	8	1933.5	8	1109;2758	y	0.00	0	960.5	0	591;1330	n	0.01	8	1571.5	8	915;2228	y	0.00	0	768.0	0	437;1099	n	0.01	21	2200.0	21	1323;3077	y	0.02	33	2127.5	33	909;3346	y	0.01	24	2268.0	24	1279;3257	y	0.00	2	964.0	2	240;1688	y	ENSMUSG00000073834.11	Mup11	chr4	protein_coding	major urinary protein 11
known_NIR_13722	chr4	61181395	61181559	-	61181436	61181559	A3SS	ENSMUST00000098042.10	known	1.00	1661	0	1661	0	n	0.99	1472	11	1472	11	y	1.00	1535	0	1535	0	n	0.99	2783	19	2783	19	y	1.00	2439	10	2439	10	y	1.00	1153	0	1153	0	n	1.00	2170	0	2170	0	n	1.00	828	0	828	0	n	0.99	2984	18	2984	18	y	1.00	2560	0	2560	0	n	1.00	3405	0	3405	0	n	1.00	1227	0	1227	0	n	ENSMUSG00000089873.9	Mup13	chr4	protein_coding	major urinary protein 13
known_NIR_13723	chr4	61258552	61259321	-	61258549	61259321	A3SS	ENSMUST00000125461.8	known	0.95	37469	2133	37469	2133	y	0.95	26102	1434	26102	1434	y	0.95	36864	1829	36864	1829	y	0.95	59566	3313	59566	3313	y	0.95	59209	3074	59209	3074	y	0.95	23325	1350	23325	1350	y	0.95	43964	2451	43964	2451	y	0.95	22485	1232	22485	1232	y	0.95	64294	3293	64294	3293	y	0.95	51164	2774	51164	2774	y	0.95	57526	3193	57526	3193	y	0.95	19867	1008	19867	1008	y	ENSMUSG00000073830.12	Mup14	chr4	protein_coding	major urinary protein 14
known_NIR_13724	chr4	61715868	61716203	+	61701736	61716203	A5SS	ENSMUST00000153865.2	known	0.00	0	6	0	6	n	0.00	0	7	0	7	n	1.00	1	0	1	0	n	0.06	1	15	1	15	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.08	1	12	1	12	n	0.00	0	14	0	14	n	0.11	4	32	4	32	y	-	-	-	-	-	-	ENSMUSG00000081207.5	Gm13775	chr4	lncRNA	predicted gene 13775
known_NIR_13725	chr4	61717841	61718183	+	61716336	61718183	A5SS	ENSMUST00000153865.2	known	0.27	7	19	7	19	y	0.32	10	21	10	21	y	-	-	-	-	-	-	0.42	23	32	23	32	y	0.40	2	3	2	3	n	1.00	2	0	2	0	n	0.00	0	17	0	17	n	0.67	2	1	2	1	n	0.34	22	43	22	43	y	0.26	28	80	28	80	y	0.35	46	86	46	86	y	0.39	15	23	15	23	y	ENSMUSG00000081207.5	Gm13775	chr4	lncRNA	predicted gene 13775
known_NIR_13726	chr4	62001964	62002785	-	62001964	62002754	A5SS	ENSMUST00000107472.8	known	0.59	24925	17398	24925	17398	y	0.58	28876	21004	28876	21004	y	0.56	15680	12148	15680	12148	y	0.59	25336	17970	25336	17970	y	0.57	25762	19206	25762	19206	y	0.54	9225	7971	9225	7971	y	0.58	27800	20485	27800	20485	y	0.56	11313	8992	11313	8992	y	0.59	28145	19251	28145	19251	y	0.59	41504	29327	41504	29327	y	0.59	35609	24838	35609	24838	y	0.57	22025	16534	22025	16534	y	ENSMUSG00000066154.12	Mup3	chr4	protein_coding	major urinary protein 3
known_NIR_13727	chr4	62321152	62326789	-	62321152	62322693	5pMXE	ENSMUST00000156854.2	known	0.03	5	138	5	138	y	0.02	2	131	2	131	y	0.02	3	141	3	141	y	0.02	2	127	2	127	y	0.02	3	196	3	196	y	0.02	2	93	2	93	y	0.05	9	179	9	179	y	0.01	1	85	1	85	n	0.01	1	117	1	117	n	0.03	7	198	7	198	y	0.02	3	160	3	160	y	0.01	1	149	1	149	n	ENSMUSG00000066149.12	Cdc26	chr4	protein_coding	cell division cycle 26
known_NIR_13728	chr4	62321152	62326789	-	62321152;62322789	62322693;62326789	ES	ENSMUST00000134727.8	known	0.04	5	131.0	5	138;124	y	0.02	2	130.0	2	131;129	y	0.02	3	142.5	3	141;144	y	0.02	2	131.0	2	127;135	y	0.02	3	183.0	3	196;170	y	0.02	2	91.0	2	93;89	y	0.05	9	176.0	9	179;173	y	0.01	1	86.0	1	85;87	n	0.01	1	120.0	1	117;123	n	0.04	7	184.5	7	198;171	y	0.02	3	149.0	3	160;138	y	0.01	1	149.5	1	149;150	n	ENSMUSG00000066149.12	Cdc26	chr4	protein_coding	cell division cycle 26
known_NIR_13729	chr4	62418330	62421544	-	62418330	62420395	5pMXE	ENSMUST00000037820.3	known	0.00	0	95	0	95	n	0.00	0	54	0	54	n	0.07	3	37	3	37	y	0.00	0	68	0	68	n	0.01	1	101	1	101	n	0.03	1	34	1	34	n	0.00	0	100	0	100	n	0.03	1	38	1	38	n	0.00	0	64	0	64	n	0.01	1	78	1	78	n	0.00	0	109	0	109	n	0.00	0	69	0	69	n	ENSMUSG00000038422.3	Hdhd3	chr4	protein_coding	haloacid dehalogenase-like hydrolase domain containing 3
known_NIR_13730	chr4	62432497	62438032	-	62432497	62438097	A5SS	ENSMUST00000137448.2	known	0.05	7	147	7	147	y	0.02	2	98	2	98	y	0.04	3	76	3	76	y	0.02	3	165	3	165	y	0.05	9	187	9	187	y	0.00	0	81	0	81	n	0.03	5	166	5	166	y	0.03	2	76	2	76	y	0.03	6	166	6	166	y	0.05	11	223	11	223	y	0.04	7	153	7	153	y	0.02	3	170	3	170	y	ENSMUSG00000028393.11	Alad	chr4	protein_coding	aminolevulinate, delta-, dehydratase
known_NIR_13731	chr4	62442673	62442847	-	62442673	62442987	A5SS	ENSMUST00000030091.10	known	0.00	0	104	0	104	n	0.00	0	90	0	90	n	0.00	0	98	0	98	n	0.01	1	87	1	87	n	0.04	3	82	3	82	y	0.00	0	49	0	49	n	0.00	0	122	0	122	n	0.01	1	71	1	71	n	0.00	0	87	0	87	n	0.00	0	123	0	123	n	0.04	3	80	3	80	y	0.02	2	95	2	95	y	ENSMUSG00000028394.10	Pole3	chr4	protein_coding	polymerase (DNA directed), epsilon 3 (p17 subunit)
known_NIR_13732	chr4	62618050	62618235	+	62618131	62618235	A5SS	ENSMUST00000125369.8	known	0.13	2	13	2	13	y	0.08	1	12	1	12	n	0.05	1	18	1	18	n	0.05	1	20	1	20	n	0.22	2	7	2	7	n	0.25	1	3	1	3	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.06	1	17	1	17	n	0.00	0	7	0	7	n	0.00	0	16	0	16	n	ENSMUSG00000059810.19	Rgs3	chr4	protein_coding	regulator of G-protein signaling 3
known_NIR_13733	chr4	62618131	62618235	+	62615569	62618235	A5SS	ENSMUST00000084521.11	known	0.87	13	2	13	2	y	0.86	12	2	12	2	y	0.86	18	3	18	3	y	0.95	20	1	20	1	n	0.88	7	1	7	1	n	1.00	3	0	3	0	n	0.89	16	2	16	2	y	1.00	6	0	6	0	n	0.55	6	5	6	5	y	0.85	17	3	17	3	y	0.58	7	5	7	5	y	0.80	16	4	16	4	y	ENSMUSG00000059810.19	Rgs3	chr4	protein_coding	regulator of G-protein signaling 3
known_NIR_13734	chr4	6272890	6275492	-	6272890;6273824	6273584;6275492	ES	ENSMUST00000029905.2	known	0.04	7	192.5	7	211;174	y	0.02	1	43.0	1	44;42	n	0.00	0	1.0	0	2;0	n	0.01	1	147.5	1	157;138	n	0.04	3	67.5	3	72;63	y	-	-	-	-	-	-	0.08	2	24.5	2	27;22	y	-	-	-	-	-	-	0.01	2	147.0	2	142;152	y	0.02	6	275.5	6	261;290	y	0.03	2	67.0	2	70;64	y	0.01	3	260.0	3	267;253	y	ENSMUSG00000028240.3	Cyp7a1	chr4	protein_coding	cytochrome P450, family 7, subfamily a, polypeptide 1
known_NIR_13735	chr4	63191348	63194165	+	63191340	63194165	A5SS	ENSMUST00000125504.8	known	0.78	18	5	18	5	y	1.00	10	0	10	0	n	0.82	28	6	28	6	y	0.76	16	5	16	5	y	0.79	27	7	27	7	y	0.56	9	7	9	7	y	0.69	18	8	18	8	y	0.68	23	11	23	11	y	0.83	15	3	15	3	y	0.63	12	7	12	7	y	0.69	11	5	11	5	y	0.79	11	3	11	3	y	ENSMUSG00000045672.16	Col27a1	chr4	protein_coding	collagen, type XXVII, alpha 1
known_NIR_13736	chr4	63227866	63230927	+	63227866	63231663	A3SS	ENSMUST00000036300.13	known	0.16	3	16	3	16	y	0.00	0	27	0	27	n	0.10	7	66	7	66	y	0.00	0	25	0	25	n	0.00	0	47	0	47	n	0.00	0	26	0	26	n	0.07	2	28	2	28	y	0.04	2	45	2	45	y	0.05	1	19	1	19	n	0.06	2	33	2	33	y	0.18	3	14	3	14	y	0.00	0	14	0	14	n	ENSMUSG00000045672.16	Col27a1	chr4	protein_coding	collagen, type XXVII, alpha 1
known_NIR_13737	chr4	63236274	63236429	+	63236274	63236499	A3SS	ENSMUST00000036300.13	known	0.29	8	20	8	20	y	0.00	0	20	0	20	n	0.11	6	50	6	50	y	0.10	2	19	2	19	y	0.21	12	46	12	46	y	0.19	4	17	4	17	y	0.19	4	17	4	17	y	0.12	5	36	5	36	y	0.11	2	16	2	16	y	0.11	5	41	5	41	y	0.26	5	14	5	14	y	0.18	2	9	2	9	y	ENSMUSG00000045672.16	Col27a1	chr4	protein_coding	collagen, type XXVII, alpha 1
known_NIR_13738	chr4	63242218	63242631	+	63242218	63242668	A3SS	ENSMUST00000036300.13	known	0.04	1	23	1	23	n	0.03	1	28	1	28	n	0.22	8	29	8	29	y	0.25	4	12	4	12	y	0.14	5	31	5	31	y	0.05	1	18	1	18	n	0.00	0	24	0	24	n	0.07	3	41	3	41	y	0.12	2	14	2	14	y	0.12	4	30	4	30	y	0.00	0	16	0	16	n	0.00	0	16	0	16	n	ENSMUSG00000045672.16	Col27a1	chr4	protein_coding	collagen, type XXVII, alpha 1
known_NIR_13739	chr4	63246132	63246769	+	63246132	63246772	A3SS	ENSMUST00000036300.13	known	0.87	20	3	20	3	y	0.73	16	6	16	6	y	0.82	62	14	62	14	y	0.84	26	5	26	5	y	0.70	23	10	23	10	y	0.73	24	9	24	9	y	0.85	39	7	39	7	y	0.87	27	4	27	4	y	0.65	13	7	13	7	y	0.78	32	9	32	9	y	0.89	24	3	24	3	y	0.65	13	7	13	7	y	ENSMUSG00000045672.16	Col27a1	chr4	protein_coding	collagen, type XXVII, alpha 1
known_NIR_13740	chr4	63477194	63479119	+	63477194	63479149	A3SS	ENSMUST00000077709.11	known	0.18	2	9	2	9	y	1.00	2	0	2	0	n	0.31	4	9	4	9	y	0.14	1	6	1	6	n	0.00	0	22	0	22	n	0.00	0	16	0	16	n	0.27	4	11	4	11	y	0.09	1	10	1	10	n	0.14	1	6	1	6	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.07	1	13	1	13	n	ENSMUSG00000045917.18	Tmem268	chr4	protein_coding	transmembrane protein 268
known_NIR_13741	chr4	63478642	63479149	+	63477194	63479149	A5SS	ENSMUST00000077709.11	known	0.18	2	9	2	9	y	1.00	1	0	1	0	n	0.65	17	9	17	9	y	0.00	0	6	0	6	n	0.15	4	22	4	22	y	0.56	20	16	20	16	y	0.15	2	11	2	11	y	0.29	4	10	4	10	y	0.00	0	6	0	6	n	0.20	1	4	1	4	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	ENSMUSG00000045917.18	Tmem268	chr4	protein_coding	transmembrane protein 268
known_NIR_13742	chr4	63478642	63479149	+	63478642	63479119	A3SS	ENSMUST00000124332.8	known	1.00	2	0	2	0	n	1.00	1	0	1	0	n	0.81	17	4	17	4	y	-	-	-	-	-	-	0.80	4	1	4	1	n	0.87	20	3	20	3	y	0.40	2	3	2	3	n	0.80	4	1	4	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000045917.18	Tmem268	chr4	protein_coding	transmembrane protein 268
known_NIR_13743	chr4	6365921	6377077	+	6365759	6377077	A5SS	ENSMUST00000029912.11	known	0.00	0	39	0	39	n	0.00	0	24	0	24	n	0.01	1	82	1	82	n	0.00	0	45	0	45	n	0.00	0	63	0	63	n	0.00	0	29	0	29	n	0.06	4	58	4	58	y	0.00	0	39	0	39	n	0.00	0	39	0	39	n	0.00	0	61	0	61	n	0.02	1	57	1	57	n	0.00	0	45	0	45	n	ENSMUSG00000028249.16	Sdcbp	chr4	protein_coding	syndecan binding protein
known_NIR_13744	chr4	6381099	6385029	+	6381099	6385026	A3SS	ENSMUST00000029912.11	known	0.22	29	100	29	100	y	0.32	24	50	24	50	y	0.23	35	114	35	114	y	0.23	24	82	24	82	y	0.27	39	104	39	104	y	0.23	17	58	17	58	y	0.27	31	83	31	83	y	0.32	21	45	21	45	y	0.24	21	65	21	65	y	0.30	36	85	36	85	y	0.23	22	72	22	72	y	0.31	34	74	34	74	y	ENSMUSG00000028249.16	Sdcbp	chr4	protein_coding	syndecan binding protein
known_NIR_13745	chr4	6440989	6453487	-	6440989	6453985	A5SS	ENSMUST00000029910.12	known	0.00	0	4	0	4	n	0.50	3	3	3	3	n	0.13	2	13	2	13	y	0.29	8	20	8	20	y	0.31	5	11	5	11	y	0.38	3	5	3	5	n	0.60	6	4	6	4	y	0.25	2	6	2	6	n	0.46	6	7	6	7	y	0.59	10	7	10	7	y	0.43	3	4	3	4	n	0.14	1	6	1	6	n	ENSMUSG00000028245.16	Nsmaf	chr4	protein_coding	neutral sphingomyelinase (N-SMase) activation associated factor
known_NIR_13746	chr4	65523306	65531369	+	65523306	65531366	A3SS	ENSMUST00000050850.14	known	0.45	5	6	5	6	y	0.75	3	1	3	1	n	0.33	3	6	3	6	n	1.00	2	0	2	0	n	0.60	6	4	6	4	y	0.57	4	3	4	3	n	0.42	5	7	5	7	y	0.50	2	2	2	2	n	0.00	0	5	0	5	n	0.33	3	6	3	6	n	1.00	1	0	1	0	n	0.14	1	6	1	6	n	ENSMUSG00000051675.14	Trim32	chr4	protein_coding	tripartite motif-containing 32
known_NIR_13747	chr4	70163734;70165211	70165185;70168590	-	70163734	70168590	cassetteExon	ENSMUST00000144099.8	known	0.20	0.5	2	1;0	2	n	0.14	0.5	3	1;0	3	n	0.00	0.0	5	0;0	5	n	0.18	2.0	9	2;2	9	y	0.08	0.5	6	1;0	6	n	0.00	0.0	1	0;0	1	n	0.11	0.5	4	1;0	4	n	0.33	2.0	4	3;1	4	n	0.00	0.0	3	0;0	3	n	0.29	2.5	6	3;2	6	y	0.52	5.5	5	7;4	5	y	0.33	2.5	5	2;3	5	y	ENSMUSG00000039298.17	Cdk5rap2	chr4	protein_coding	CDK5 regulatory subunit associated protein 2
known_NIR_13748	chr4	72056922	72057926	-	72056925	72057926	A3SS	ENSMUST00000074216.14	known	0.21	3	11	3	11	y	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	16	0	16	n	0.12	2	14	2	14	y	0.08	1	11	1	11	n	0.12	2	14	2	14	y	0.00	0	7	0	7	n	0.33	3	6	3	6	n	0.09	1	10	1	10	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	ENSMUSG00000008305.19	Tle1	chr4	protein_coding	transducin-like enhancer of split 1
known_NIR_13749	chr4	72056925;72057300	72057199;72057926	-	72056925	72057926	cassetteExon	ENSMUST00000074216.14	known	0.69	24.0	11	29;19	11	y	0.58	12.5	9	12;13	9	y	0.56	10.0	8	11;9	8	y	0.56	20.0	16	21;19	16	y	0.65	26.0	14	29;23	14	y	0.51	11.5	11	15;8	11	y	0.65	25.5	14	23;28	14	y	0.50	7.0	7	7;7	7	y	0.64	10.5	6	10;11	6	y	0.68	21.0	10	20;22	10	y	0.68	17.0	8	11;23	8	y	0.83	29.0	6	27;31	6	y	ENSMUSG00000008305.19	Tle1	chr4	protein_coding	transducin-like enhancer of split 1
known_NIR_13750	chr4	72057300	72057926	-	72056922	72057926	A3SS	ENSMUST00000102848.9	known	0.86	19	3	19	3	y	1.00	13	0	13	0	n	1.00	9	0	9	0	n	1.00	19	0	19	0	n	0.92	23	2	23	2	y	0.89	8	1	8	1	n	0.93	28	2	28	2	y	1.00	7	0	7	0	n	0.79	11	3	11	3	y	0.96	22	1	22	1	n	1.00	23	0	23	0	n	1.00	31	0	31	0	n	ENSMUSG00000008305.19	Tle1	chr4	protein_coding	transducin-like enhancer of split 1
known_NIR_13751	chr4	72076654	72087329	-	72076654	72087359	A5SS	ENSMUST00000074216.14	known	0.08	4	46	4	46	y	0.16	10	52	10	52	y	0.09	10	97	10	97	y	0.11	9	70	9	70	y	0.15	15	87	15	87	y	0.10	4	36	4	36	y	0.16	17	87	17	87	y	0.13	10	69	10	69	y	0.16	12	61	12	61	y	0.19	23	96	23	96	y	0.13	11	71	11	71	y	0.13	14	93	14	93	y	ENSMUSG00000008305.19	Tle1	chr4	protein_coding	transducin-like enhancer of split 1
known_NIR_13752	chr4	72117658	72118219	-	72117634	72118219	A3SS	ENSMUST00000074216.14	known	0.04	3	65	3	65	y	0.00	0	51	0	51	n	0.06	4	68	4	68	y	0.05	3	62	3	62	y	0.06	6	98	6	98	y	0.06	3	46	3	46	y	0.01	1	70	1	70	n	0.00	0	67	0	67	n	0.04	2	45	2	45	y	0.01	1	82	1	82	n	0.03	2	74	2	74	y	0.03	3	100	3	100	y	ENSMUSG00000008305.19	Tle1	chr4	protein_coding	transducin-like enhancer of split 1
known_NIR_13753	chr4	75957615;75958158	75958117;75968564	-	75957615	75968564	cassetteExon	ENSMUST00000107289.9	known	0.08	3.0	34	5;1	34	n	0.05	1.0	19	1;1	19	n	0.09	3.0	31	2;4	31	y	0.02	1.5	70	2;1	70	n	0.05	4.5	91	5;4	91	y	0.00	0.0	28	0;0	28	n	0.09	4.5	47	4;5	47	y	0.01	0.5	38	0;1	38	n	0.09	4.0	39	5;3	39	y	0.02	1.5	82	2;1	82	n	0.01	0.5	43	0;1	43	n	0.04	2.5	55	4;1	55	n	ENSMUSG00000028399.19	Ptprd	chr4	protein_coding	protein tyrosine phosphatase, receptor type, D
known_NIR_13754	chr4	75968676;75972837	75972826;75977906	-	75968676	75977906	cassetteExon	ENSMUST00000107289.9	known	0.00	0.0	23	0;0	23	n	0.00	0.0	28	0;0	28	n	0.00	0.0	32	0;0	32	n	0.02	1.0	63	1;1	63	n	0.00	0.0	64	0;0	64	n	0.00	0.0	22	0;0	22	n	0.00	0.0	50	0;0	50	n	0.04	1.5	33	2;1	33	n	0.00	0.0	52	0;0	52	n	0.01	1.0	83	1;1	83	n	0.03	1.0	30	1;1	30	n	0.04	2.5	64	3;2	64	y	ENSMUSG00000028399.19	Ptprd	chr4	protein_coding	protein tyrosine phosphatase, receptor type, D
known_NIR_13755	chr4	76003798	76004249	-	76003795	76004249	A3SS	ENSMUST00000107289.9	known	0.36	8	14	8	14	y	0.31	4	9	4	9	y	0.22	4	14	4	14	y	0.21	9	34	9	34	y	0.25	18	53	18	53	y	0.35	6	11	6	11	y	0.43	23	30	23	30	y	0.26	9	25	9	25	y	0.33	7	14	7	14	y	0.25	13	38	13	38	y	0.29	7	17	7	17	y	0.27	15	40	15	40	y	ENSMUSG00000028399.19	Ptprd	chr4	protein_coding	protein tyrosine phosphatase, receptor type, D
known_NIR_13756	chr4	76009776	76017649	-	76009776;76013783	76013757;76017649	ES	ENSMUST00000107289.9	known	0.14	2	12.5	2	11;14	y	0.29	3	7.5	3	9;6	y	0.17	5	24.5	5	25;24	y	0.21	7	26.5	7	28;25	y	0.24	13	42.0	13	45;39	y	0.32	6	12.5	6	14;11	y	0.33	10	20.0	10	23;17	y	0.27	7	18.5	7	18;19	y	0.34	11	21.0	11	24;18	y	0.17	8	38.0	8	37;39	y	0.51	14	13.5	14	14;13	y	0.46	24	28.5	24	28;29	y	ENSMUSG00000028399.19	Ptprd	chr4	protein_coding	protein tyrosine phosphatase, receptor type, D
known_NIR_13757	chr4	76051569	76055048	-	76051569;76053793	76053782;76055048	ES	ENSMUST00000107289.9	known	1.00	8	0.0	8	0;0	n	0.83	5	1.0	5	1;1	n	1.00	16	0.0	16	0;0	n	1.00	29	0.0	29	0;0	n	0.99	48	0.5	48	0;1	n	1.00	6	0.0	6	0;0	n	0.98	21	0.5	21	0;1	n	0.87	17	2.5	17	2;3	y	0.91	16	1.5	16	1;2	n	0.90	27	3.0	27	3;3	y	1.00	13	0.0	13	0;0	n	1.00	25	0.0	25	0;0	n	ENSMUSG00000028399.19	Ptprd	chr4	protein_coding	protein tyrosine phosphatase, receptor type, D
known_NIR_13758	chr4	76243582	76262403	-	76243582	76367880	A5SS	ENSMUST00000107289.9	known	0.50	3	3	3	3	n	-	-	-	-	-	-	1.00	5	0	5	0	n	0.55	6	5	6	5	y	0.40	4	6	4	6	y	0.57	4	3	4	3	n	0.40	4	6	4	6	y	0.67	4	2	4	2	n	1.00	2	0	2	0	n	0.53	9	8	9	8	y	0.83	5	1	5	1	n	0.74	14	5	14	5	y	ENSMUSG00000028399.19	Ptprd	chr4	protein_coding	protein tyrosine phosphatase, receptor type, D
known_NIR_13759	chr4	81201674	81203700	-	81201674	81202814	5pMXE	ENSMUST00000156441.8	known	0.00	0	42	0	42	n	0.00	0	40	0	40	n	0.06	2	30	2	30	y	0.00	0	37	0	37	n	0.00	0	45	0	45	n	0.00	0	13	0	13	n	0.00	0	40	0	40	n	0.00	0	16	0	16	n	0.00	0	32	0	32	n	0.00	0	38	0	38	n	0.00	0	22	0	22	n	0.00	0	37	0	37	n	ENSMUSG00000028402.19	Mpdz	chr4	protein_coding	multiple PDZ domain crumbs cell polarity complex component
known_NIR_13760	chr4	81201674	81203700	-	81201674;81202936	81202814;81203700	ES	ENSMUST00000107262.8	known	0.00	0	31.0	0	42;20	n	0.00	0	27.5	0	40;15	n	0.07	2	26.0	2	30;22	y	0.00	0	30.5	0	37;24	n	0.00	0	34.5	0	45;24	n	0.00	0	11.5	0	13;10	n	0.00	0	32.0	0	40;24	n	0.00	0	14.0	0	16;12	n	0.00	0	25.5	0	32;19	n	0.00	0	36.0	0	38;34	n	0.00	0	19.5	0	22;17	n	0.00	0	30.5	0	37;24	n	ENSMUSG00000028402.19	Mpdz	chr4	protein_coding	multiple PDZ domain crumbs cell polarity complex component
known_NIR_13761	chr4	81201674	81203700	-	81202936	81203700	A3SS	ENSMUST00000131418.2	known	0.00	0	20	0	20	n	0.00	0	15	0	15	n	0.08	2	22	2	22	y	0.00	0	24	0	24	n	0.00	0	24	0	24	n	0.00	0	10	0	10	n	0.00	0	24	0	24	n	0.00	0	12	0	12	n	0.00	0	19	0	19	n	0.00	0	34	0	34	n	0.00	0	17	0	17	n	0.00	0	24	0	24	n	ENSMUSG00000028402.19	Mpdz	chr4	protein_coding	multiple PDZ domain crumbs cell polarity complex component
known_NIR_13762	chr4	81228556	81231737	-	81228556	81238583	A5SS	ENSMUST00000131197.4	known	0.29	2	5	2	5	n	0.17	1	5	1	5	n	0.12	1	7	1	7	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.10	1	9	1	9	n	0.00	0	8	0	8	n	0.09	1	10	1	10	n	0.13	3	20	3	20	y	0.00	0	2	0	2	n	0.00	0	16	0	16	n	ENSMUSG00000028402.19	Mpdz	chr4	protein_coding	multiple PDZ domain crumbs cell polarity complex component
known_NIR_13763	chr4	81228556	81235831	-	81228556;81231835	81231737;81235831	ES	ENSMUST00000107262.8	known	0.25	1	3.0	1	2;4	n	0.86	3	0.5	3	1;0	n	0.80	2	0.5	2	1;0	n	0.95	9	0.5	9	0;1	n	0.95	9	0.5	9	0;1	n	1.00	1	0.0	1	0;0	n	0.97	18	0.5	18	1;0	n	1.00	2	0.0	2	0;0	n	0.92	6	0.5	6	1;0	n	0.84	19	3.5	19	3;4	y	1.00	7	0.0	7	0;0	n	1.00	9	0.0	9	0;0	n	ENSMUSG00000028402.19	Mpdz	chr4	protein_coding	multiple PDZ domain crumbs cell polarity complex component
known_NIR_13764	chr4	81228556	81238583	-	81228556;81235941	81235831;81238583	ES	ENSMUST00000107258.9	known	0.71	5	2.0	5	1;3	n	0.48	5	5.5	5	3;8	y	0.78	7	2.0	7	2;2	y	0.62	14	8.5	14	9;8	y	0.54	10	8.5	10	9;8	y	0.71	5	2.0	5	1;3	n	0.41	9	13.0	9	18;8	y	0.59	8	5.5	8	2;9	y	0.67	10	5.0	10	6;4	y	0.58	20	14.5	20	19;10	y	0.29	2	5.0	2	7;3	y	0.60	16	10.5	16	9;12	y	ENSMUSG00000028402.19	Mpdz	chr4	protein_coding	multiple PDZ domain crumbs cell polarity complex component
known_NIR_13765	chr4	81247768	81253913	-	81247768	81251214	5pMXE	ENSMUST00000125288.8	known	1.00	14	0	14	0	n	1.00	11	0	11	0	n	1.00	16	0	16	0	n	1.00	34	0	34	0	n	1.00	31	0	31	0	n	1.00	5	0	5	0	n	0.52	11	10	11	10	y	1.00	22	0	22	0	n	1.00	20	0	20	0	n	1.00	42	0	42	0	n	1.00	13	0	13	0	n	1.00	19	0	19	0	n	ENSMUSG00000028402.19	Mpdz	chr4	protein_coding	multiple PDZ domain crumbs cell polarity complex component
known_NIR_13766	chr4	81247768;81251255	81251214;81253913	-	81247768	81253913	cassetteExon	ENSMUST00000107262.8	known	0.00	0.0	14	0;0	14	n	0.00	0.0	11	0;0	11	n	0.06	1.0	16	0;2	16	n	0.00	0.0	34	0;0	34	n	0.00	0.0	31	0;0	31	n	0.00	0.0	5	0;0	5	n	0.41	7.5	11	10;5	11	y	0.00	0.0	22	0;0	22	n	0.00	0.0	20	0;0	20	n	0.00	0.0	42	0;0	42	n	0.00	0.0	13	0;0	13	n	0.00	0.0	19	0;0	19	n	ENSMUSG00000028402.19	Mpdz	chr4	protein_coding	multiple PDZ domain crumbs cell polarity complex component
known_NIR_13767	chr4	82215048	82238711	-	82215048	82228540	A5SS&ES	ENSMUST00000107246.2	known	0.80	4	1	4	1	n	0.33	1	2	1	2	n	0.21	3	11	3	11	y	0.38	5	8	5	8	y	0.21	3	11	3	11	y	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.33	2	4	2	4	n	0.22	2	7	2	7	n	0.38	3	5	3	5	n	0.00	0	7	0	7	n	0.15	2	11	2	11	y	ENSMUSG00000008575.18	Nfib	chr4	protein_coding	nuclear factor I/B
known_NIR_13768	chr4	82215048	82238711	-	82215048	82245966	A5SS	ENSMUST00000064770.9	known	0.57	4	3	4	3	n	0.12	1	7	1	7	n	0.27	3	8	3	8	y	0.29	5	12	5	12	y	0.38	3	5	3	5	n	0.33	1	2	1	2	n	0.00	0	10	0	10	n	0.20	2	8	2	8	y	0.20	2	8	2	8	y	0.14	3	18	3	18	y	0.00	0	11	0	11	n	0.12	2	15	2	15	y	ENSMUSG00000008575.18	Nfib	chr4	protein_coding	nuclear factor I/B
known_NIR_13769	chr4	82215048	82238711	-	82215048;82228628	82228540;82238711	ES	ENSMUST00000050872.15	known	0.67	4	2.0	4	1;3	n	0.29	1	2.5	1	2;3	n	0.25	3	9.0	3	11;7	y	0.42	5	7.0	5	8;6	y	0.27	3	8.0	3	11;5	y	0.29	1	2.5	1	3;2	n	0.00	0	7.5	0	6;9	n	0.33	2	4.0	2	4;4	y	0.17	2	10.0	2	7;13	y	0.38	3	5.0	3	5;5	y	0.00	0	8.0	0	7;9	n	0.22	2	7.0	2	11;3	y	ENSMUSG00000008575.18	Nfib	chr4	protein_coding	nuclear factor I/B
known_NIR_13770	chr4	82215048;82228628	82228540;82245966	-	82215048	82245966	cassetteExon	ENSMUST00000064770.9	known	0.14	0.5	3	1;0	3	n	0.12	1.0	7	2;0	7	n	0.43	6.0	8	11;1	8	n	0.25	4.0	12	8;0	12	n	0.52	5.5	5	11;0	5	n	0.43	1.5	2	3;0	2	n	0.23	3.0	10	6;0	10	n	0.20	2.0	8	4;0	8	n	0.30	3.5	8	7;0	8	n	0.12	2.5	18	5;0	18	n	0.24	3.5	11	7;0	11	n	0.30	6.5	15	11;2	15	y	ENSMUSG00000008575.18	Nfib	chr4	protein_coding	nuclear factor I/B
known_NIR_13771	chr4	82215048;82228628	82228540;82245966	-	82215048;82241947	82238711;82245966	MXE	ENSMUST00000107245.9	known	0.10	0.5	4.5	1;0	4;5	n	0.17	1.0	5.0	2;0	1;9	n	0.41	6.0	8.5	11;1	3;14	n	0.20	4.0	16.0	8;0	5;27	n	0.39	5.5	8.5	11;0	3;14	n	0.33	1.5	3.0	3;0	1;5	n	0.29	3.0	7.5	6;0	0;15	n	0.31	2.0	4.5	4;0	2;7	n	0.39	3.5	5.5	7;0	2;9	n	0.22	2.5	9.0	5;0	3;15	n	0.35	3.5	6.5	7;0	0;13	n	0.37	6.5	11.0	11;2	2;20	y	ENSMUSG00000008575.18	Nfib	chr4	protein_coding	nuclear factor I/B
known_NIR_13772	chr4	82238793	82241809	-	82238793	82241782	A5SS	ENSMUST00000050872.15	known	0.71	5	2	5	2	n	0.30	3	7	3	7	y	0.56	9	7	9	7	y	0.55	6	5	6	5	y	0.53	8	7	8	7	y	0.67	4	2	4	2	n	0.64	9	5	9	5	y	0.54	7	6	7	6	y	0.27	3	8	3	8	y	0.65	11	6	11	6	y	0.17	2	10	2	10	y	0.54	14	12	14	12	y	ENSMUSG00000008575.18	Nfib	chr4	protein_coding	nuclear factor I/B
known_NIR_13773	chr4	82241947	82245966	-	82215048	82245966	A3SS	ENSMUST00000064770.9	known	0.62	5	3	5	3	n	0.56	9	7	9	7	y	0.64	14	8	14	8	y	0.69	27	12	27	12	y	0.74	14	5	14	5	y	0.71	5	2	5	2	n	0.60	15	10	15	10	y	0.47	7	8	7	8	y	0.53	9	8	9	8	y	0.45	15	18	15	18	y	0.54	13	11	13	11	y	0.57	20	15	20	15	y	ENSMUSG00000008575.18	Nfib	chr4	protein_coding	nuclear factor I/B
known_NIR_13774	chr4	82241947	82245966	-	82228628	82245966	A3SS	ENSMUST00000107246.2	known	1.00	5	0	5	0	n	1.00	9	0	9	0	n	0.93	14	1	14	1	n	1.00	27	0	27	0	n	1.00	14	0	14	0	n	1.00	5	0	5	0	n	1.00	15	0	15	0	n	1.00	7	0	7	0	n	1.00	9	0	9	0	n	1.00	15	0	15	0	n	1.00	13	0	13	0	n	0.91	20	2	20	2	y	ENSMUSG00000008575.18	Nfib	chr4	protein_coding	nuclear factor I/B
known_NIR_13775	chr4	83177703	83179119	-	83174349	83179119	A3SS	ENSMUST00000102823.10	known	0.21	4	15	4	15	y	0.29	5	12	5	12	y	0.32	19	41	19	41	y	0.24	8	26	8	26	y	0.18	6	27	6	27	y	0.38	9	15	9	15	y	0.11	2	17	2	17	y	0.38	9	15	9	15	y	0.19	3	13	3	13	y	0.26	8	23	8	23	y	0.29	5	12	5	12	y	0.19	6	26	6	26	y	ENSMUSG00000038172.15	Ttc39b	chr4	protein_coding	tetratricopeptide repeat domain 39B
known_NIR_13776	chr4	83337020	83353428	+	83337020;83346103	83346019;83353428	ES	ENSMUST00000030206.10	known	0.12	1	7.0	1	5;9	n	0.00	0	4.5	0	4;5	n	0.00	0	14.0	0	14;14	n	0.00	0	9.0	0	10;8	n	0.09	2	20.0	2	19;21	y	0.00	0	4.5	0	7;2	n	0.15	2	11.5	2	9;14	y	0.24	2	6.5	2	7;6	y	0.09	1	10.5	1	8;13	n	0.07	1	12.5	1	8;17	n	0.30	3	7.0	3	8;6	y	0.07	1	12.5	1	11;14	n	ENSMUSG00000028483.14	Snapc3	chr4	protein_coding	small nuclear RNA activating complex, polypeptide 3
known_NIR_13777	chr4	83372385	83384202	+	83372385	83378400	3pMXE	ENSMUST00000123262.8	known	1.00	5	0	5	0	n	0.60	3	2	3	2	n	1.00	2	0	2	0	n	0.80	4	1	4	1	n	0.50	5	5	5	5	y	0.25	1	3	1	3	n	1.00	4	0	4	0	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.80	4	1	4	1	n	0.40	4	6	4	6	y	0.81	13	3	13	3	y	ENSMUSG00000028483.14	Snapc3	chr4	protein_coding	small nuclear RNA activating complex, polypeptide 3
known_NIR_13778	chr4	83380411	83381832	-	83379478	83381832	A3SS	ENSMUST00000030207.15	known	0.00	0	25	0	25	n	0.00	0	13	0	13	n	0.03	1	35	1	35	n	0.08	2	24	2	24	y	0.00	0	25	0	25	n	0.00	0	11	0	11	n	0.00	0	23	0	23	n	0.00	0	15	0	15	n	0.00	0	17	0	17	n	0.00	0	35	0	35	n	0.00	0	11	0	11	n	0.00	0	36	0	36	n	ENSMUSG00000028484.17	Psip1	chr4	protein_coding	PC4 and SFRS1 interacting protein 1
known_NIR_13779	chr4	83380710	83381832	-	83379478	83381832	A3SS	ENSMUST00000030207.15	known	0.17	5	25	5	25	y	0.32	6	13	6	13	y	0.10	4	35	4	35	y	0.20	6	24	6	24	y	0.14	4	25	4	25	y	0.31	5	11	5	11	y	0.26	8	23	8	23	y	0.38	9	15	9	15	y	0.29	7	17	7	17	y	0.17	7	35	7	35	y	0.42	8	11	8	11	y	0.20	9	36	9	36	y	ENSMUSG00000028484.17	Psip1	chr4	protein_coding	PC4 and SFRS1 interacting protein 1
known_NIR_13780	chr4	83380710	83381832	-	83380790	83381832	A3SS	ENSMUST00000107214.9	known	0.25	5	15	5	15	y	0.38	6	10	6	10	y	0.29	4	10	4	10	y	0.43	6	8	6	8	y	0.36	4	7	4	7	y	0.71	5	2	5	2	n	0.36	8	14	8	14	y	0.60	9	6	9	6	y	0.44	7	9	7	9	y	0.47	7	8	7	8	y	0.62	8	5	8	5	y	0.41	9	13	9	13	y	ENSMUSG00000028484.17	Psip1	chr4	protein_coding	PC4 and SFRS1 interacting protein 1
known_NIR_13781	chr4	83380790	83381832	-	83379478	83381832	A3SS	ENSMUST00000030207.15	known	0.38	15	25	15	25	y	0.43	10	13	10	13	y	0.22	10	35	10	35	y	0.25	8	24	8	24	y	0.22	7	25	7	25	y	0.15	2	11	2	11	y	0.38	14	23	14	23	y	0.29	6	15	6	15	y	0.35	9	17	9	17	y	0.19	8	35	8	35	y	0.31	5	11	5	11	y	0.27	13	36	13	36	y	ENSMUSG00000028484.17	Psip1	chr4	protein_coding	PC4 and SFRS1 interacting protein 1
known_NIR_13782	chr4	83380790	83381832	-	83380411	83381832	A3SS	ENSMUST00000126706.8	known	1.00	15	0	15	0	n	1.00	10	0	10	0	n	0.91	10	1	10	1	n	0.80	8	2	8	2	y	1.00	7	0	7	0	n	1.00	2	0	2	0	n	1.00	14	0	14	0	n	1.00	6	0	6	0	n	1.00	9	0	9	0	n	1.00	8	0	8	0	n	1.00	5	0	5	0	n	1.00	13	0	13	0	n	ENSMUSG00000028484.17	Psip1	chr4	protein_coding	PC4 and SFRS1 interacting protein 1
known_NIR_13783	chr4	83614352	83614488	+	83612672	83614488	A5SS	ENSMUST00000053414.13	known	0.50	5	5	5	5	y	0.43	3	4	3	4	n	0.00	0	2	0	2	n	0.18	3	14	3	14	y	0.27	3	8	3	8	y	1.00	5	0	5	0	n	0.42	5	7	5	7	y	0.17	1	5	1	5	n	0.45	5	6	5	6	y	0.39	11	17	11	17	y	0.20	3	12	3	12	y	0.44	4	5	4	5	n	ENSMUSG00000052407.18	Ccdc171	chr4	protein_coding	coiled-coil domain containing 171
known_NIR_13784	chr4	86575641;86576409	86576337;86576818	-	86575641	86576818	cassetteExon	ENSMUST00000154999.2	known	0.01	4.0	682	4;4	682	y	0.00	3.5	998	3;4	998	y	0.00	15.0	4620	13;17	4620	y	0.00	6.0	1380	6;6	1380	y	0.01	9.5	1482	10;9	1482	y	0.00	5.5	2785	6;5	2785	y	0.00	10.0	2495	10;10	2495	y	0.00	3.0	1489	4;2	1489	y	0.00	4.0	940	3;5	940	y	0.01	12.0	2218	12;12	2218	y	0.01	12.0	1757	12;12	1757	y	0.00	3.0	1188	0;6	1188	n	ENSMUSG00000028494.13	Plin2	chr4	protein_coding	perilipin 2
known_NIR_13785	chr4	86586942	86587683	-	86586942	86588182	A5SS	ENSMUST00000000466.13	known	0.00	0	199	0	199	n	0.00	0	183	0	183	n	0.00	0	1594	0	1594	n	0.01	3	476	3	476	y	0.00	0	441	0	441	n	0.00	2	807	2	807	y	0.00	3	675	3	675	y	0.00	2	479	2	479	y	0.00	1	293	1	293	n	0.00	2	666	2	666	y	0.00	0	424	0	424	n	0.01	2	370	2	370	y	ENSMUSG00000028494.13	Plin2	chr4	protein_coding	perilipin 2
known_NIR_13786	chr4	86586942	86587938	-	86586942	86587683	5pMXE	ENSMUST00000149700.8	known	-	-	-	-	-	-	1.00	7	0	7	0	n	1.00	25	0	25	0	n	0.50	3	3	3	3	n	1.00	4	0	4	0	n	0.60	3	2	3	2	n	0.70	7	3	7	3	y	0.71	5	2	5	2	n	0.88	7	1	7	1	n	0.80	8	2	8	2	y	-	-	-	-	-	-	0.80	8	2	8	2	y	ENSMUSG00000028494.13	Plin2	chr4	protein_coding	perilipin 2
known_NIR_13787	chr4	86586942	86587938	-	86586942	86588182	A5SS	ENSMUST00000000466.13	known	0.00	0	199	0	199	n	0.04	7	183	7	183	y	0.02	25	1594	25	1594	y	0.01	3	476	3	476	y	0.01	4	441	4	441	y	0.00	3	807	3	807	y	0.01	7	675	7	675	y	0.01	5	479	5	479	y	0.02	7	293	7	293	y	0.01	8	666	8	666	y	0.00	0	424	0	424	n	0.02	8	370	8	370	y	ENSMUSG00000028494.13	Plin2	chr4	protein_coding	perilipin 2
known_NIR_13788	chr4	86731774	86738099	+	86731774;86732165	86732019;86738099	ES	ENSMUST00000045512.15	known	0.83	5	1.0	5	1;1	n	0.00	0	6.5	0	5;8	n	0.37	7	12.0	7	10;14	y	0.43	5	6.5	5	8;5	y	0.44	13	16.5	13	22;11	y	0.55	3	2.5	3	2;3	n	0.46	8	9.5	8	12;7	y	0.30	5	11.5	5	17;6	y	0.53	9	8.0	9	7;9	y	0.50	8	8.0	8	7;9	y	0.40	5	7.5	5	9;6	y	0.48	14	15.0	14	15;15	y	ENSMUSG00000038024.18	Dennd4c	chr4	protein_coding	DENN/MADD domain containing 4C
known_NIR_13789	chr4	86805402	86829853	+	86805402;86818856	86818719;86829853	ES	ENSMUST00000045224.14	known	0.00	0	9.0	0	6;12	n	0.00	0	6.5	0	3;10	n	0.12	4	28.0	4	20;36	y	0.11	1	8.0	1	8;8	n	0.12	2	14.5	2	18;11	y	0.00	0	15.0	0	13;17	n	0.00	0	24.5	0	18;31	n	0.00	0	7.0	0	9;5	n	0.00	0	5.5	0	6;5	n	0.00	0	13.0	0	16;10	n	0.18	1	4.5	1	2;7	n	0.00	0	9.0	0	6;12	n	ENSMUSG00000038007.15	Acer2	chr4	protein_coding	alkaline ceramidase 2
known_NIR_13790	chr4	86829990	86850269	+	86829990	86835631	3pMXE	ENSMUST00000045224.14	known	0.12	1	7	1	7	n	0.17	1	5	1	5	n	0.14	3	19	3	19	y	0.00	0	15	0	15	n	0.12	2	15	2	15	y	0.22	4	14	4	14	y	0.00	0	16	0	16	n	0.14	1	6	1	6	n	0.25	1	3	1	3	n	0.00	0	5	0	5	n	1.00	2	0	2	0	n	0.00	0	5	0	5	n	ENSMUSG00000038007.15	Acer2	chr4	protein_coding	alkaline ceramidase 2
known_NIR_13791	chr4	87712248	87724448	-	87712248	87758919	A5SS	ENSMUST00000078090.12	known	0.00	0	13	0	13	n	0.00	0	1	0	1	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.57	12	9	12	9	y	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	15	0	15	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000028496.18	Mllt3	chr4	protein_coding	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3
known_NIR_13792	chr4	8855514	8856674	+	8855514	8856671	A3SS	ENSMUST00000039267.10	known	0.60	6	4	6	4	y	0.88	14	2	14	2	y	0.74	17	6	17	6	y	0.53	10	9	10	9	y	0.69	22	10	22	10	y	1.00	9	0	9	0	n	0.79	19	5	19	5	y	0.55	6	5	6	5	y	1.00	6	0	6	0	n	0.69	9	4	9	4	y	0.90	9	1	9	1	n	0.76	16	5	16	5	y	ENSMUSG00000041235.13	Chd7	chr4	protein_coding	chromodomain helicase DNA binding protein 7
known_NIR_13793	chr4	94463471	94470718	-	94463471;94466692	94466624;94470718	ES	ENSMUST00000107107.9	known	0.00	0	76.5	0	81;72	n	0.02	1	64.0	1	74;54	n	0.02	3	158.0	3	169;147	y	0.01	1	96.0	1	107;85	n	0.02	2	115.5	2	125;106	y	0.00	0	76.0	0	82;70	n	0.00	0	117.5	0	114;121	n	0.00	0	62.5	0	65;60	n	0.01	1	67.5	1	64;71	n	0.01	1	94.0	1	101;87	n	0.06	4	63.5	4	63;64	y	0.01	1	101.5	1	113;90	n	ENSMUSG00000028577.14	Plaa	chr4	protein_coding	phospholipase A2, activating protein
known_NIR_13794	chr4	94740111	94741606	+	94740114	94741606	A5SS	ENSMUST00000073939.13	known	0.17	1	5	1	5	n	0.67	2	1	2	1	n	0.12	1	7	1	7	n	0.50	3	3	3	3	n	0.22	2	7	2	7	n	1.00	2	0	2	0	n	0.25	3	9	3	9	y	0.50	3	3	3	3	n	0.38	3	5	3	5	n	0.62	5	3	5	3	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	ENSMUSG00000006386.16	Tek	chr4	protein_coding	TEK receptor tyrosine kinase
known_NIR_13795	chr4	94857290	94858749	-	94857295	94858749	A3SS	ENSMUST00000075872.4	known	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.15	2	11	2	11	y	0.33	5	10	5	10	y	0.11	1	8	1	8	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.08	1	11	1	11	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	ENSMUSG00000062627.10	Mysm1	chr4	protein_coding	myb-like, SWIRM and MPN domains 1
known_NIR_13796	chr4	95445828	95446113	+	95445828	95473469	A3SS	ENSMUST00000079223.11	known	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	20	0	20	n	0.00	0	4	0	4	n	0.00	0	21	0	21	n	0.00	0	12	0	12	n	0.18	3	14	3	14	y	0.00	0	19	0	19	n	0.07	2	26	2	26	y	0.00	0	19	0	19	n	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
known_NIR_13797	chr4	95445828	95485860	+	95445828;95473684	95473469;95485860	ES	ENSMUST00000079223.11	known	0.00	0	61.5	0	8;115	n	0.00	0	57.0	0	7;107	n	0.00	0	29.5	0	11;48	n	0.00	0	89.0	0	12;166	n	0.01	1	111.0	1	20;202	n	0.05	1	20.0	1	4;36	n	0.00	0	81.5	0	21;142	n	0.00	0	36.5	0	12;61	n	0.03	2	75.0	2	14;136	y	0.00	0	110.0	0	19;201	n	0.01	1	80.5	1	26;135	n	0.00	0	116.0	0	19;213	n	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
known_NIR_13798	chr4	95467791	95473469	+	95445828	95473469	A5SS	ENSMUST00000079223.11	known	0.95	168	8	168	8	y	0.93	95	7	95	7	y	0.85	63	11	63	11	y	0.93	171	12	171	12	y	0.90	184	20	184	20	y	0.92	49	4	49	4	y	0.87	137	21	137	21	y	0.86	73	12	73	12	y	0.92	162	14	162	14	y	0.91	199	19	199	19	y	0.82	117	26	117	26	y	0.92	214	19	214	19	y	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
known_NIR_13799	chr4	95473684	95489202	+	95473684	95485860	3pMXE	ENSMUST00000177394.8	known	0.00	0	115	0	115	n	0.00	0	107	0	107	n	0.00	0	48	0	48	n	0.00	0	166	0	166	n	0.00	0	202	0	202	n	0.00	0	36	0	36	n	0.00	0	142	0	142	n	0.00	0	61	0	61	n	0.00	0	136	0	136	n	0.00	0	201	0	201	n	0.00	0	135	0	135	n	0.01	2	213	2	213	y	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
known_NIR_13800	chr4	95473684	95489202	+	95473684;95485971	95485860;95489202	ES	ENSMUST00000079223.11	known	0.00	0	118.5	0	115;122	n	0.00	0	102.5	0	107;98	n	0.00	0	54.5	0	48;61	n	0.00	0	169.0	0	166;172	n	0.00	0	189.5	0	202;177	n	0.00	0	47.0	0	36;58	n	0.00	0	135.5	0	142;129	n	0.00	0	57.0	0	61;53	n	0.00	0	143.5	0	136;151	n	0.00	0	210.5	0	201;220	n	0.00	0	135.5	0	135;136	n	0.01	2	205.0	2	213;197	y	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
known_NIR_13801	chr4	95489353	95585197	+	95489353;95511806	95511718;95585197	ES	ENSMUST00000079223.11	known	0.02	3	152.5	3	148;157	y	0.06	7	118.5	7	127;110	y	0.04	2	49.5	2	47;52	y	0.04	6	152.0	6	154;150	y	0.03	6	197.0	6	191;203	y	0.00	0	58.5	0	62;55	n	0.03	5	178.0	5	171;185	y	0.03	2	67.5	2	70;65	y	0.02	4	172.5	4	168;177	y	0.03	7	226.0	7	236;216	y	0.05	8	148.0	8	146;150	y	0.04	9	219.5	9	225;214	y	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
known_NIR_13802	chr4	95489353	95585197	+	95511806	95585197	A5SS&ES	ENSMUST00000134012.9	known	0.02	3	157	3	157	y	0.06	7	110	7	110	y	0.04	2	52	2	52	y	0.04	6	150	6	150	y	0.03	6	203	6	203	y	0.00	0	55	0	55	n	0.03	5	185	5	185	y	0.03	2	65	2	65	y	0.02	4	177	4	177	y	0.03	7	216	7	216	y	0.05	8	150	8	150	y	0.04	9	214	9	214	y	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
known_NIR_13803	chr4	95585312;95620765	95620498;95627026	+	95585312	95627026	cassetteExon	ENSMUST00000079223.11	known	0.01	1.5	160	0;3	160	n	0.03	4.0	132	5;3	132	y	0.03	1.5	57	0;3	57	n	0.00	0.0	157	0;0	157	n	0.00	0.0	198	0;0	198	n	0.00	0.0	44	0;0	44	n	0.01	1.0	179	2;0	179	n	0.01	0.5	71	0;1	71	n	0.00	0.0	206	0;0	206	n	0.01	2.5	249	0;5	249	n	0.00	0.0	178	0;0	178	n	0.00	0.0	229	0;0	229	n	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
known_NIR_13804	chr4	95626718	95627026	+	95585312	95627026	A5SS	ENSMUST00000079223.11	known	0.02	4	160	4	160	y	0.00	0	132	0	132	n	0.12	8	57	8	57	y	0.03	5	157	5	157	y	0.03	6	198	6	198	y	0.08	4	44	4	44	y	0.03	5	179	5	179	y	0.12	10	71	10	71	y	0.01	2	206	2	206	y	0.02	4	249	4	249	y	0.00	0	178	0	178	n	0.01	2	229	2	229	y	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
known_NIR_13805	chr4	95626718	95627026	+	95620765	95627026	A5SS	ENSMUST00000143742.3	known	0.57	4	3	4	3	n	0.00	0	3	0	3	n	0.73	8	3	8	3	y	1.00	5	0	5	0	n	1.00	6	0	6	0	n	1.00	4	0	4	0	n	1.00	5	0	5	0	n	0.91	10	1	10	1	n	1.00	2	0	2	0	n	0.44	4	5	4	5	n	-	-	-	-	-	-	1.00	2	0	2	0	n	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
known_NIR_13806	chr4	95627154	95688794	+	95627154	95657663	3pMXE	ENSMUST00000134012.9	known	0.00	0	152	0	152	n	0.01	1	132	1	132	n	0.00	0	46	0	46	n	0.00	0	146	0	146	n	0.00	0	192	0	192	n	0.00	0	50	0	50	n	0.01	1	177	1	177	n	0.01	1	77	1	77	n	0.01	2	172	2	172	y	0.01	3	256	3	256	y	0.00	0	194	0	194	n	0.01	2	225	2	225	y	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
known_NIR_13807	chr4	95627154	95688794	+	95627154;95657766	95657663;95688794	ES	ENSMUST00000079223.11	known	0.00	0	132.5	0	152;113	n	0.01	1	125.0	1	132;118	n	0.00	0	46.5	0	46;47	n	0.00	0	139.0	0	146;132	n	0.00	0	174.0	0	192;156	n	0.00	0	44.5	0	50;39	n	0.01	1	163.5	1	177;150	n	0.01	1	68.0	1	77;59	n	0.01	2	150.5	2	172;129	y	0.01	3	229.5	3	256;203	y	0.00	0	183.0	0	194;172	n	0.01	2	220.0	2	225;215	y	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
known_NIR_13808	chr4	95627154	95688794	+	95657766	95688794	5pMXE	ENSMUST00000130541.8	known	0.00	0	113	0	113	n	0.01	1	118	1	118	n	0.00	0	47	0	47	n	0.00	0	132	0	132	n	0.00	0	156	0	156	n	0.00	0	39	0	39	n	0.01	1	150	1	150	n	0.02	1	59	1	59	n	0.02	2	129	2	129	y	0.01	3	203	3	203	y	0.00	0	172	0	172	n	0.01	2	215	2	215	y	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
known_NIR_13809	chr4	95627154;95657766	95657663;95725822	+	95627154;95710362	95688794;95725822	MXE	ENSMUST00000141248.8	known	0.45	79.5	98.0	152;7	0;196	n	0.42	68.5	93.0	132;5	1;185	n	0.33	23.0	46.0	46;0	0;92	n	0.40	76.5	114.0	146;7	0;228	n	0.46	99.5	115.5	192;7	0;231	n	0.46	26.5	31.0	50;3	0;62	n	0.41	95.5	139.5	177;14	1;278	n	0.46	38.5	44.5	77;0	1;88	n	0.44	93.5	120.5	172;15	2;239	y	0.46	134.5	160.0	256;13	3;317	y	0.46	100.5	116.5	194;7	0;233	n	0.45	117.5	142.5	225;10	2;283	y	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
known_NIR_13810	chr4	95657766	95688794	+	95657766	95725822	A3SS	ENSMUST00000147766.8	known	0.94	113	7	113	7	y	0.96	118	5	118	5	y	1.00	47	0	47	0	n	0.95	132	7	132	7	y	0.96	156	7	156	7	y	0.93	39	3	39	3	y	0.91	150	14	150	14	y	1.00	59	0	59	0	n	0.90	129	15	129	15	y	0.94	203	13	203	13	y	0.96	172	7	172	7	y	0.96	215	10	215	10	y	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
known_NIR_13811	chr4	95700406	95709119	+	95700406	95710215	A3SS	ENSMUST00000079223.11	known	0.29	53	130	53	130	y	0.28	36	94	36	94	y	0.40	23	34	23	34	y	0.34	53	105	53	105	y	0.29	61	149	61	149	y	0.32	14	30	14	30	y	0.23	43	146	43	146	y	0.40	20	30	20	30	y	0.29	46	112	46	112	y	0.31	75	169	75	169	y	0.27	51	139	51	139	y	0.26	66	185	66	185	y	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
known_NIR_13812	chr4	95710362	95725822	+	95657766	95725822	A5SS	ENSMUST00000147766.8	known	0.97	196	7	196	7	y	0.97	185	5	185	5	y	1.00	92	0	92	0	n	0.97	228	7	228	7	y	0.97	231	7	231	7	y	0.95	62	3	62	3	y	0.95	278	14	278	14	y	1.00	88	0	88	0	n	0.94	239	15	239	15	y	0.96	317	13	317	13	y	0.97	233	7	233	7	y	0.97	283	10	283	10	y	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
known_NIR_13813	chr4	95725896	95727247	+	95725896	95732310	A3SS	ENSMUST00000079223.11	known	0.00	0	202	0	202	n	0.00	0	206	0	206	n	0.00	0	87	0	87	n	0.02	4	240	4	240	y	0.02	4	235	4	235	y	0.00	0	56	0	56	n	0.00	0	233	0	233	n	0.03	3	90	3	90	y	0.00	0	223	0	223	n	0.02	6	327	6	327	y	0.02	6	260	6	260	y	0.00	1	295	1	295	n	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
known_NIR_13814	chr4	95725896	95737819	+	95725896	95727247	3pMXE	ENSMUST00000176162.8	known	1.00	17	0	17	0	n	1.00	16	0	16	0	n	1.00	2	0	2	0	n	0.81	17	4	17	4	y	0.73	11	4	11	4	y	1.00	3	0	3	0	n	1.00	18	0	18	0	n	0.25	1	3	1	3	n	1.00	16	0	16	0	n	0.80	24	6	24	6	y	0.67	12	6	12	6	y	0.92	11	1	11	1	n	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
known_NIR_13815	chr4	95725896	95737819	+	95725896;95732430	95732310;95737819	ES	ENSMUST00000079223.11	known	0.07	17	215.0	17	202;228	y	0.07	16	201.0	16	206;196	y	0.02	2	87.0	2	87;87	y	0.06	17	256.0	17	240;272	y	0.04	11	246.5	11	235;258	y	0.05	3	58.5	3	56;61	y	0.07	18	254.0	18	233;275	y	0.01	1	92.0	1	90;94	n	0.06	16	231.0	16	223;239	y	0.06	24	351.0	24	327;375	y	0.04	12	261.0	12	260;262	y	0.04	11	303.0	11	295;311	y	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
known_NIR_13816	chr4	95725896;95732430	95732310;95811162	+	95725896;95737913	95737819;95811162	MXE	ENSMUST00000130541.8	known	0.44	101.5	128.0	202;1	17;239	n	0.46	103.0	120.5	206;0	16;225	n	0.53	44.0	39.5	87;1	2;77	n	0.49	120.5	123.0	240;1	17;229	n	0.49	118.0	122.5	235;1	11;234	n	0.47	28.0	31.5	56;0	3;60	n	0.44	116.5	150.5	233;0	18;283	n	0.48	45.0	49.5	90;0	1;98	n	0.50	111.5	113.5	223;0	16;211	n	0.47	163.5	185.0	327;0	24;346	n	0.51	131.0	126.0	260;2	12;240	y	0.48	147.5	163.0	295;0	11;315	n	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
known_NIR_13817	chr4	95732430	95811162	+	95732430;95737913	95737819;95811162	ES	ENSMUST00000079223.11	known	0.00	1	233.5	1	228;239	n	0.00	0	210.5	0	196;225	n	0.01	1	82.0	1	87;77	n	0.00	1	250.5	1	272;229	n	0.00	1	246.0	1	258;234	n	0.00	0	60.5	0	61;60	n	0.00	0	279.0	0	275;283	n	0.00	0	96.0	0	94;98	n	0.00	0	225.0	0	239;211	n	0.00	0	360.5	0	375;346	n	0.01	2	251.0	2	262;240	y	0.00	0	313.0	0	311;315	n	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
known_NIR_13818	chr4	95737913	95765199	+	95737913	95811162	A3SS	ENSMUST00000079223.11	known	0.00	0	239	0	239	n	0.00	0	225	0	225	n	0.00	0	77	0	77	n	0.00	0	229	0	229	n	0.00	1	234	1	234	n	0.00	0	60	0	60	n	0.00	0	283	0	283	n	0.00	0	98	0	98	n	0.00	0	211	0	211	n	0.01	2	346	2	346	y	0.00	1	240	1	240	n	0.00	0	315	0	315	n	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
known_NIR_13819	chr4	95737913;95790293	95790216;95811162	+	95737913	95811162	cassetteExon	ENSMUST00000079223.11	known	0.02	4.5	239	2;7	239	y	0.00	1.0	225	1;1	225	n	0.00	0.0	77	0;0	77	n	0.02	4.0	229	5;3	229	y	0.01	3.5	234	1;6	234	n	0.00	0.0	60	0;0	60	n	0.00	1.0	283	1;1	283	n	0.02	2.5	98	1;4	98	n	0.01	3.0	211	3;3	211	y	0.01	4.5	346	5;4	346	y	0.01	3.0	240	2;4	240	y	0.01	2.0	315	2;2	315	y	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
known_NIR_13820	chr4	9576973	9583812	-	9542310	9583812	A3SS	ENSMUST00000078139.13	known	0.71	30	12	30	12	y	0.71	35	14	35	14	y	0.65	74	39	74	39	y	0.60	46	31	46	31	y	0.68	76	36	76	36	y	0.54	32	27	32	27	y	0.70	43	18	43	18	y	0.58	41	30	41	30	y	0.78	39	11	39	11	y	0.72	55	21	55	21	y	0.78	31	9	31	9	y	0.74	42	15	42	15	y	ENSMUSG00000028207.19	Asph	chr4	protein_coding	aspartate-beta-hydroxylase
known_NIR_13821	chr4	95903138	95904646	+	95903138	95905825	A3SS	ENSMUST00000141448.8	known	1.00	84	0	84	0	n	1.00	38	0	38	0	n	0.99	232	2	232	2	y	1.00	102	0	102	0	n	1.00	157	0	157	0	n	1.00	91	0	91	0	n	1.00	105	0	105	0	n	1.00	104	0	104	0	n	1.00	63	0	63	0	n	1.00	119	0	119	0	n	1.00	75	0	75	0	n	0.99	100	1	100	1	n	ENSMUSG00000028572.14	Hook1	chr4	protein_coding	hook microtubule tethering protein 1
known_NIR_13822	chr4	95905262	95905825	+	95903138	95905825	A5SS	ENSMUST00000141448.8	known	1.00	83	0	83	0	n	1.00	40	0	40	0	n	0.99	242	2	242	2	y	1.00	94	0	94	0	n	1.00	155	0	155	0	n	1.00	87	0	87	0	n	1.00	93	0	93	0	n	1.00	117	0	117	0	n	1.00	53	0	53	0	n	1.00	153	0	153	0	n	1.00	81	0	81	0	n	0.99	104	1	104	1	n	ENSMUSG00000028572.14	Hook1	chr4	protein_coding	hook microtubule tethering protein 1
known_NIR_13823	chr4	95908645	95909805	+	95907941	95909805	A5SS	ENSMUST00000030306.14	known	0.00	0	80	0	80	n	0.00	0	49	0	49	n	0.01	2	265	2	265	y	0.00	0	125	0	125	n	0.00	0	178	0	178	n	0.00	0	105	0	105	n	0.01	1	136	1	136	n	0.00	0	102	0	102	n	0.00	0	78	0	78	n	0.00	0	142	0	142	n	0.00	0	61	0	61	n	0.00	0	127	0	127	n	ENSMUSG00000028572.14	Hook1	chr4	protein_coding	hook microtubule tethering protein 1
known_NIR_13824	chr4	9598301	9601307	-	9598301;9598780	9598733;9601307	ES	ENSMUST00000078139.13	known	0.54	25	21.0	25	24;18	y	0.53	15	13.5	15	12;15	y	0.67	52	26.0	52	26;26	y	0.59	27	18.5	27	15;22	y	0.68	50	23.5	50	22;25	y	0.70	39	17.0	39	20;14	y	0.54	27	23.0	27	22;24	y	0.65	43	23.0	43	24;22	y	0.70	27	11.5	27	14;9	y	0.67	24	12.0	24	8;16	y	0.66	31	16.0	31	13;19	y	0.67	34	17.0	34	18;16	y	ENSMUSG00000028207.19	Asph	chr4	protein_coding	aspartate-beta-hydroxylase
known_NIR_13825	chr4	9604629	9610843	-	9604629;9607871	9607797;9610843	ES	ENSMUST00000078139.13	known	0.06	2	32.0	2	27;37	y	0.09	2	21.0	2	25;17	y	0.03	2	72.5	2	77;68	y	0.08	4	43.5	4	47;40	y	0.01	1	86.0	1	81;91	n	0.00	0	46.5	0	39;54	n	0.02	1	45.0	1	45;45	n	0.00	0	64.5	0	58;71	n	0.00	0	35.5	0	36;35	n	0.04	2	55.0	2	54;56	y	0.06	2	34.0	2	31;37	y	0.05	2	39.0	2	37;41	y	ENSMUSG00000028207.19	Asph	chr4	protein_coding	aspartate-beta-hydroxylase
known_NIR_13826	chr4	9604629	9610843	-	9607871	9610843	3pMXE	ENSMUST00000152526.8	known	0.05	2	37	2	37	y	0.11	2	17	2	17	y	0.03	2	68	2	68	y	0.09	4	40	4	40	y	0.01	1	91	1	91	n	0.00	0	54	0	54	n	0.02	1	45	1	45	n	0.00	0	71	0	71	n	0.00	0	35	0	35	n	0.03	2	56	2	56	y	0.05	2	37	2	37	y	0.05	2	41	2	41	y	ENSMUSG00000028207.19	Asph	chr4	protein_coding	aspartate-beta-hydroxylase
known_NIR_13827	chr4	9610938;9624401	9624360;9635901	-	9610938	9635901	cassetteExon	ENSMUST00000078139.13	known	0.00	0.0	33	0;0	33	n	0.00	0.0	19	0;0	19	n	0.00	0.0	56	0;0	56	n	0.00	0.0	42	0;0	42	n	0.00	0.0	67	0;0	67	n	0.00	0.0	41	0;0	41	n	0.16	10.0	51	2;18	51	y	0.00	0.0	49	0;0	49	n	0.00	0.0	33	0;0	33	n	0.00	0.0	42	0;0	42	n	0.00	0.0	26	0;0	26	n	0.00	0.0	30	0;0	30	n	ENSMUSG00000028207.19	Asph	chr4	protein_coding	aspartate-beta-hydroxylase
known_NIR_13828	chr4	9622226	9624360	-	9610938	9624360	A3SS	ENSMUST00000108333.8	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.92	24	2	24	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028207.19	Asph	chr4	protein_coding	aspartate-beta-hydroxylase
known_NIR_13829	chr4	9630952	9635901	-	9610938	9635901	A3SS	ENSMUST00000078139.13	known	0.00	0	33	0	33	n	0.21	5	19	5	19	y	0.05	3	56	3	56	y	0.00	0	42	0	42	n	0.06	4	67	4	67	y	0.05	2	41	2	41	y	0.09	5	51	5	51	y	0.00	0	49	0	49	n	0.06	2	33	2	33	y	0.00	0	42	0	42	n	0.00	0	26	0	26	n	0.03	1	30	1	30	n	ENSMUSG00000028207.19	Asph	chr4	protein_coding	aspartate-beta-hydroxylase
known_NIR_13830	chr4	9630952	9635901	-	9624401	9635901	A3SS	ENSMUST00000108333.8	known	-	-	-	-	-	-	1.00	5	0	5	0	n	1.00	3	0	3	0	n	-	-	-	-	-	-	1.00	4	0	4	0	n	1.00	2	0	2	0	n	0.22	5	18	5	18	y	-	-	-	-	-	-	1.00	2	0	2	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000028207.19	Asph	chr4	protein_coding	aspartate-beta-hydroxylase
known_NIR_13831	chr4	9639347	9643535	-	9639347	9668781	A5SS	ENSMUST00000078139.13	known	0.00	0	38	0	38	n	0.00	0	23	0	23	n	0.00	0	59	0	59	n	0.00	0	49	0	49	n	0.00	0	63	0	63	n	0.00	0	42	0	42	n	0.27	17	47	17	47	y	0.00	0	59	0	59	n	0.00	0	22	0	22	n	0.00	0	35	0	35	n	0.00	0	22	0	22	n	0.00	0	38	0	38	n	ENSMUSG00000028207.19	Asph	chr4	protein_coding	aspartate-beta-hydroxylase
known_NIR_13832	chr4	9639347	9669156	-	9639347	9668781	A5SS	ENSMUST00000078139.13	known	0.00	0	38	0	38	n	0.00	0	23	0	23	n	0.03	2	59	2	59	y	0.00	0	49	0	49	n	0.00	0	63	0	63	n	0.00	0	42	0	42	n	0.00	0	47	0	47	n	0.00	0	59	0	59	n	0.00	0	22	0	22	n	0.00	0	35	0	35	n	0.00	0	22	0	22	n	0.00	0	38	0	38	n	ENSMUSG00000028207.19	Asph	chr4	protein_coding	aspartate-beta-hydroxylase
known_NIR_13833	chr4	97666231	97671319	+	97661148	97671319	A5SS	ENSMUST00000152023.8	known	0.95	21	1	21	1	n	1.00	8	0	8	0	n	0.97	38	1	38	1	n	0.97	35	1	35	1	n	1.00	46	0	46	0	n	0.96	25	1	25	1	n	0.95	40	2	40	2	y	1.00	25	0	25	0	n	0.83	15	3	15	3	y	0.87	26	4	26	4	y	1.00	11	0	11	0	n	0.94	17	1	17	1	n	ENSMUSG00000028565.19	Nfia	chr4	protein_coding	nuclear factor I/A
known_NIR_13834	chr4	97909191	97951250	+	97909191	97929788	3pMXE	ENSMUST00000133011.2	known	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.12	5	37	5	37	y	0.00	0	25	0	25	n	0.03	2	58	2	58	y	0.03	1	31	1	31	n	0.00	0	45	0	45	n	0.14	5	30	5	30	y	0.13	2	13	2	13	y	0.15	6	34	6	34	y	0.06	1	16	1	16	n	0.13	6	40	6	40	y	ENSMUSG00000028565.19	Nfia	chr4	protein_coding	nuclear factor I/A
known_NIR_13835	chr4	97909191	97951250	+	97909191;97929916	97929788;97951250	ES	ENSMUST00000075448.13	known	0.00	0	17.0	0	14;20	n	0.00	0	14.0	0	6;22	n	0.09	5	53.0	5	37;69	y	0.00	0	25.0	0	25;25	n	0.03	2	61.0	2	58;64	y	0.03	1	30.0	1	31;29	n	0.00	0	35.5	0	45;26	n	0.14	5	31.0	5	30;32	y	0.10	2	17.5	2	13;22	y	0.15	6	35.0	6	34;36	y	0.05	1	17.5	1	16;19	n	0.16	6	32.5	6	40;25	y	ENSMUSG00000028565.19	Nfia	chr4	protein_coding	nuclear factor I/A
known_NIR_13836	chr4	97909191	97951250	+	97929916	97951250	A5SS&ES	ENSMUST00000107057.8	known	0.00	0	20	0	20	n	0.00	0	22	0	22	n	0.07	5	69	5	69	y	0.00	0	25	0	25	n	0.03	2	64	2	64	y	0.03	1	29	1	29	n	0.00	0	26	0	26	n	0.14	5	32	5	32	y	0.08	2	22	2	22	y	0.14	6	36	6	36	y	0.05	1	19	1	19	n	0.19	6	25	6	25	y	ENSMUSG00000028565.19	Nfia	chr4	protein_coding	nuclear factor I/A
known_NIR_13837	chr4	97953683	97999455	+	97953683;97970053	97969962;97999455	ES	ENSMUST00000075448.13	known	0.05	1	18.5	1	19;18	n	0.25	5	15.0	5	14;16	y	0.16	12	62.5	12	63;62	y	0.23	6	20.0	6	22;18	y	0.30	17	40.0	17	40;40	y	0.23	8	26.5	8	23;30	y	0.09	4	40.5	4	35;46	y	0.12	3	22.0	3	12;32	y	0.23	8	26.5	8	27;26	y	0.17	7	34.5	7	30;39	y	0.20	2	8.0	2	7;9	y	0.10	3	26.0	3	23;29	y	ENSMUSG00000028565.19	Nfia	chr4	protein_coding	nuclear factor I/A
known_NIR_13838	chr4	98263265	98268855	-	98263250	98268855	A3SS	ENSMUST00000030292.12	known	0.95	82	4	82	4	y	1.00	71	0	71	0	n	0.96	116	5	116	5	y	1.00	100	0	100	0	n	0.99	123	1	123	1	n	1.00	62	0	62	0	n	0.96	128	5	128	5	y	1.00	62	0	62	0	n	0.94	74	5	74	5	y	0.98	118	2	118	2	y	1.00	102	0	102	0	n	1.00	118	0	118	0	n	ENSMUSG00000028563.17	Tm2d1	chr4	protein_coding	TM2 domain containing 1
known_NIR_13839	chr4	98263265	98268855	-	98263265	98271201	A5SS	ENSMUST00000107051.10	known	0.94	82	5	82	5	y	0.99	71	1	71	1	n	0.97	116	4	116	4	y	0.93	100	7	100	7	y	0.93	123	9	123	9	y	0.98	62	1	62	1	n	0.98	128	2	128	2	y	0.97	62	2	62	2	y	0.97	74	2	74	2	y	0.98	118	3	118	3	y	0.99	102	1	102	1	n	0.90	118	13	118	13	y	ENSMUSG00000028563.17	Tm2d1	chr4	protein_coding	TM2 domain containing 1
known_NIR_13840	chr4	98511926	98538605	+	98511926;98526999	98526928;98538605	ES	ENSMUST00000238306.2	known	0.00	0	11.0	0	12;10	n	0.00	0	5.5	0	5;6	n	0.11	1	8.0	1	7;9	n	0.00	0	10.0	0	15;5	n	0.00	0	6.5	0	4;9	n	0.00	0	6.5	0	6;7	n	0.00	0	9.5	0	10;9	n	0.00	0	5.5	0	5;6	n	0.25	2	6.0	2	7;5	y	0.00	0	9.5	0	6;13	n	0.17	2	10.0	2	9;11	y	0.00	0	10.5	0	8;13	n	ENSMUSG00000061859.18	Patj	chr4	protein_coding	PATJ, crumbs cell polarity complex component
known_NIR_13841	chr4	98812480	98814673	+	98812480	98814692	A3SS	ENSMUST00000030289.9	known	0.60	3	2	3	2	n	0.75	3	1	3	1	n	0.52	16	15	16	15	y	0.40	4	6	4	6	y	0.45	10	12	10	12	y	0.82	9	2	9	2	y	0.74	14	5	14	5	y	0.57	4	3	4	3	n	0.60	6	4	6	4	y	0.62	5	3	5	3	n	1.00	2	0	2	0	n	0.85	11	2	11	2	y	ENSMUSG00000028560.12	Usp1	chr4	protein_coding	ubiquitin specific peptidase 1
known_NIR_13842	chr4	98812480	98816471	+	98812480;98814911	98814673;98816471	ES	ENSMUST00000091358.11	known	0.44	6	7.5	6	3;12	y	0.40	5	7.5	5	3;12	y	0.23	8	27.5	8	16;39	y	0.49	10	10.5	10	4;17	y	0.48	15	16.0	15	10;22	y	0.16	3	15.5	3	9;22	y	0.18	5	23.5	5	14;33	y	0.52	7	6.5	7	4;9	y	0.19	3	12.5	3	6;19	y	0.41	7	10.0	7	5;15	y	0.00	0	6.5	0	2;11	n	0.20	4	16.5	4	11;22	y	ENSMUSG00000028560.12	Usp1	chr4	protein_coding	ubiquitin specific peptidase 1
known_NIR_13843	chr4	98812480	98816471	+	98812480;98814911	98814692;98816471	ES	ENSMUST00000030289.9	known	0.46	6	7.0	6	2;12	y	0.43	5	6.5	5	1;12	n	0.23	8	27.0	8	15;39	y	0.47	10	11.5	10	6;17	y	0.47	15	17.0	15	12;22	y	0.20	3	12.0	3	2;22	y	0.21	5	19.0	5	5;33	y	0.54	7	6.0	7	3;9	y	0.21	3	11.5	3	4;19	y	0.44	7	9.0	7	3;15	y	0.00	0	5.5	0	0;11	n	0.25	4	12.0	4	2;22	y	ENSMUSG00000028560.12	Usp1	chr4	protein_coding	ubiquitin specific peptidase 1
known_NIR_13844	chr4	98921604	98923066	+	98921604;98922795	98922682;98923066	ES	ENSMUST00000030280.7	known	0.00	0	1646.0	0	1604;1688	n	0.00	2	1304.0	2	1156;1452	y	0.00	0	164.0	0	147;181	n	0.00	0	1576.5	0	1514;1639	n	0.00	1	1625.0	1	1640;1610	n	0.01	1	111.0	1	116;106	n	0.00	0	1561.5	0	1486;1637	n	0.00	0	478.0	0	429;527	n	0.00	0	1496.0	0	1427;1565	n	0.00	4	2197.0	4	2033;2361	y	0.00	2	1543.0	2	1443;1643	y	0.00	8	2503.5	8	2429;2578	y	ENSMUSG00000028553.13	Angptl3	chr4	protein_coding	angiopoietin-like 3
known_NIR_13845	chr4	99082520	99100814	+	99082689	99100814	A5SS	ENSMUST00000030279.15	known	0.62	8	5	8	5	y	0.40	6	9	6	9	y	0.15	5	29	5	29	y	0.32	10	21	10	21	y	0.28	11	28	11	28	y	0.54	7	6	7	6	y	0.17	5	24	5	24	y	0.36	5	9	5	9	y	0.12	1	7	1	7	n	0.28	5	13	5	13	y	0.41	7	10	7	10	y	0.31	4	9	4	9	y	ENSMUSG00000028550.16	Atg4c	chr4	protein_coding	autophagy related 4C, cysteine peptidase
known_NIR_13846	chr4	99615184	99626361	+	99615184	99632727	A3SS	ENSMUST00000107004.9	known	0.00	0	6	0	6	n	0.50	2	2	2	2	n	0.30	3	7	3	7	y	0.56	5	4	5	4	n	0.43	6	8	6	8	y	0.30	3	7	3	7	y	0.54	7	6	7	6	y	0.00	0	6	0	6	n	0.56	5	4	5	4	n	0.22	5	18	5	18	y	0.00	0	4	0	4	n	0.00	0	7	0	7	n	ENSMUSG00000073792.12	Alg6	chr4	protein_coding	asparagine-linked glycosylation 6 (alpha-1,3,-glucosyltransferase)
known_NIR_13847	chr4	99615184	99626361	+	99615184	99636923	A3SS	ENSMUST00000139799.3	known	-	-	-	-	-	-	1.00	2	0	2	0	n	0.60	3	2	3	2	n	0.71	5	2	5	2	n	0.50	6	6	6	6	y	0.60	3	2	3	2	n	0.70	7	3	7	3	y	0.00	0	2	0	2	n	0.83	5	1	5	1	n	0.71	5	2	5	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000073792.12	Alg6	chr4	protein_coding	asparagine-linked glycosylation 6 (alpha-1,3,-glucosyltransferase)
known_NIR_13848	chr4	99615184	99632727	+	99615184	99636923	A3SS	ENSMUST00000139799.3	known	1.00	6	0	6	0	n	1.00	2	0	2	0	n	0.78	7	2	7	2	n	0.67	4	2	4	2	n	0.57	8	6	8	6	y	0.78	7	2	7	2	n	0.67	6	3	6	3	n	0.75	6	2	6	2	n	0.80	4	1	4	1	n	0.90	18	2	18	2	y	1.00	4	0	4	0	n	0.64	7	4	7	4	y	ENSMUSG00000073792.12	Alg6	chr4	protein_coding	asparagine-linked glycosylation 6 (alpha-1,3,-glucosyltransferase)
known_NIR_13849	chr4	99632177	99632727	+	99615184	99632727	A5SS	ENSMUST00000107004.9	known	0.14	1	6	1	6	n	0.60	3	2	3	2	n	0.22	2	7	2	7	n	0.33	2	4	2	4	n	0.38	5	8	5	8	y	0.50	7	7	7	7	y	0.14	1	6	1	6	n	0.14	1	6	1	6	n	0.33	2	4	2	4	n	0.05	1	18	1	18	n	0.43	3	4	3	4	n	0.22	2	7	2	7	n	ENSMUSG00000073792.12	Alg6	chr4	protein_coding	asparagine-linked glycosylation 6 (alpha-1,3,-glucosyltransferase)
known_NIR_13850	chr4	99677916	99690334	-	99677916;99686999	99686933;99690334	ES	ENSMUST00000146258.2	known	0.17	2	9.5	2	6;13	y	0.60	3	2.0	3	2;2	n	0.00	0	6.0	0	4;8	n	0.29	1	2.5	1	4;1	n	0.11	1	8.0	1	7;9	n	0.00	0	3.5	0	4;3	n	0.14	1	6.0	1	6;6	n	0.00	0	6.0	0	5;7	n	0.33	4	8.0	4	4;12	y	0.14	1	6.0	1	6;6	n	0.00	0	2.5	0	1;4	n	0.75	3	1.0	3	1;1	n	ENSMUSG00000028549.18	Itgb3bp	chr4	protein_coding	integrin beta 3 binding protein (beta3-endonexin)
known_NIR_13851	chr4	99677916	99702295	-	99677916	99686933	A5SS&ES	ENSMUST00000123830.8	known	0.65	11	6	11	6	y	0.75	6	2	6	2	n	0.69	9	4	9	4	y	0.76	13	4	13	4	y	0.67	14	7	14	7	y	0.73	11	4	11	4	y	0.80	24	6	24	6	y	0.44	4	5	4	5	n	0.79	15	4	15	4	y	0.65	11	6	11	6	y	0.92	12	1	12	1	n	0.92	11	1	11	1	n	ENSMUSG00000028549.18	Itgb3bp	chr4	protein_coding	integrin beta 3 binding protein (beta3-endonexin)
known_NIR_13852	chr4	99677916	99702295	-	99677916;99690469	99690334;99702295	ES	ENSMUST00000102786.11	known	0.71	11	4.5	11	2;7	y	0.63	6	3.5	6	3;4	y	0.75	9	3.0	9	0;6	n	0.84	13	2.5	13	1;4	n	0.82	14	3.0	14	1;5	n	0.81	11	2.5	11	0;5	n	0.87	24	3.5	24	1;6	n	0.73	4	1.5	4	0;3	n	0.75	15	5.0	15	4;6	y	0.88	11	1.5	11	1;2	n	0.73	12	4.5	12	0;9	n	0.71	11	4.5	11	3;6	y	ENSMUSG00000028549.18	Itgb3bp	chr4	protein_coding	integrin beta 3 binding protein (beta3-endonexin)
known_NIR_13853	chr5	100109192	100109993	-	100109192	100109957	A5SS	ENSMUST00000171106.8	known	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.14	1	6	1	6	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.07	1	13	1	13	n	0.00	0	11	0	11	n	0.15	2	11	2	11	y	ENSMUSG00000000568.16	Hnrnpd	chr5	protein_coding	heterogeneous nuclear ribonucleoprotein D
known_NIR_13854	chr5	100109192;100110063	100109957;100110374	-	100109192	100110374	cassetteExon	ENSMUST00000172361.8	known	0.08	11.5	127	9;14	127	y	0.06	8.5	129	6;11	129	y	0.04	6.0	140	1;11	140	n	0.10	11.0	94	7;15	94	y	0.06	9.5	161	6;13	161	y	0.02	1.5	87	3;0	87	n	0.07	11.0	152	8;14	152	y	0.11	7.5	63	6;9	63	y	0.07	8.5	107	8;9	107	y	0.11	19.0	148	13;25	148	y	0.07	11.5	163	11;12	163	y	0.09	17.0	182	11;23	182	y	ENSMUSG00000000568.16	Hnrnpd	chr5	protein_coding	heterogeneous nuclear ribonucleoprotein D
known_NIR_13855	chr5	100109192;100110063	100109993;100110374	-	100109192	100110374	cassetteExon	ENSMUST00000172361.8	known	0.05	7.0	127	0;14	127	n	0.04	5.5	129	0;11	129	n	0.04	5.5	140	0;11	140	n	0.07	7.5	94	0;15	94	n	0.04	7.0	161	1;13	161	n	0.00	0.0	87	0;0	87	n	0.04	7.0	152	0;14	152	n	0.07	4.5	63	0;9	63	n	0.04	4.5	107	0;9	107	n	0.08	13.0	148	1;25	148	n	0.04	6.0	163	0;12	163	n	0.06	12.5	182	2;23	182	y	ENSMUSG00000000568.16	Hnrnpd	chr5	protein_coding	heterogeneous nuclear ribonucleoprotein D
known_NIR_13856	chr5	100110471	100111843	-	100110471;100111736	100111590;100111843	ES	ENSMUST00000172361.8	known	0.36	48	86.0	48	98;74	y	0.48	84	90.5	84	90;91	y	0.50	90	88.5	90	97;80	y	0.37	40	69.0	40	70;68	y	0.45	102	126.5	102	133;120	y	0.47	44	49.5	44	49;50	y	0.51	99	97.0	99	108;86	y	0.51	52	49.5	52	44;55	y	0.43	55	71.5	55	75;68	y	0.45	95	115.0	95	106;124	y	0.44	74	94.5	74	96;93	y	0.53	119	105.0	119	122;88	y	ENSMUSG00000000568.16	Hnrnpd	chr5	protein_coding	heterogeneous nuclear ribonucleoprotein D
known_NIR_13857	chr5	100115246	100126251	-	100115246	100124393	5pMXE	ENSMUST00000171106.8	known	0.51	35	33	35	33	y	0.43	31	41	31	41	y	0.39	40	63	40	63	y	0.51	44	42	44	42	y	0.58	80	58	80	58	y	0.51	32	31	32	31	y	0.44	40	50	40	50	y	0.36	25	45	25	45	y	0.41	24	35	24	35	y	0.54	73	61	73	61	y	0.51	43	42	43	42	y	0.51	60	57	60	57	y	ENSMUSG00000000568.16	Hnrnpd	chr5	protein_coding	heterogeneous nuclear ribonucleoprotein D
known_NIR_13858	chr5	100115246	100126251	-	100115246;100124449	100124393;100126251	ES	ENSMUST00000172361.8	known	0.49	35	36.5	35	33;40	y	0.41	31	44.0	31	41;47	y	0.36	40	71.5	40	63;80	y	0.52	44	40.5	44	42;39	y	0.59	80	55.5	80	58;53	y	0.50	32	31.5	32	31;32	y	0.48	40	43.5	40	50;37	y	0.40	25	38.0	25	45;31	y	0.43	24	32.0	24	35;29	y	0.57	73	54.0	73	61;47	y	0.54	43	36.5	43	42;31	y	0.53	60	53.5	60	57;50	y	ENSMUSG00000000568.16	Hnrnpd	chr5	protein_coding	heterogeneous nuclear ribonucleoprotein D
known_NIR_13859	chr5	100182843	100183963	-	100182843	100183494	5pMXE	ENSMUST00000135424.7	known	0.48	26	28	26	28	y	0.48	24	26	24	26	y	0.41	27	39	27	39	y	0.51	27	26	27	26	y	0.22	11	40	11	40	y	0.41	11	16	11	16	y	0.51	26	25	26	25	y	0.28	5	13	5	13	y	0.29	10	25	10	25	y	0.38	25	41	25	41	y	0.38	21	34	21	34	y	0.46	31	37	31	37	y	ENSMUSG00000029328.16	Hnrnpdl	chr5	protein_coding	heterogeneous nuclear ribonucleoprotein D-like
known_NIR_13860	chr5	100182843	100183963	-	100183598	100183963	3pMXE	ENSMUST00000149384.8	known	0.30	26	60	26	60	y	0.27	24	65	24	65	y	0.28	27	71	27	71	y	0.36	27	48	27	48	y	0.12	11	82	11	82	y	0.23	11	37	11	37	y	0.29	26	64	26	64	y	0.14	5	31	5	31	y	0.19	10	43	10	43	y	0.30	25	58	25	58	y	0.25	21	63	21	63	y	0.28	31	80	31	80	y	ENSMUSG00000029328.16	Hnrnpdl	chr5	protein_coding	heterogeneous nuclear ribonucleoprotein D-like
known_NIR_13861	chr5	100182843;100183598	100183494;100183963	-	100182843	100183963	cassetteExon	ENSMUST00000128187.8	known	0.63	44.0	26	28;60	26	y	0.65	45.5	24	26;65	24	y	0.67	55.0	27	39;71	27	y	0.58	37.0	27	26;48	27	y	0.85	61.0	11	40;82	11	y	0.71	26.5	11	16;37	11	y	0.63	44.5	26	25;64	26	y	0.81	22.0	5	13;31	5	y	0.77	34.0	10	25;43	10	y	0.66	49.5	25	41;58	25	y	0.70	48.5	21	34;63	21	y	0.65	58.5	31	37;80	31	y	ENSMUSG00000029328.16	Hnrnpdl	chr5	protein_coding	heterogeneous nuclear ribonucleoprotein D-like
known_NIR_13862	chr5	100185840	100186433	-	100185840	100186579	A5SS	ENSMUST00000128187.8	known	0.03	3	96	3	96	y	0.00	0	76	0	76	n	0.04	5	127	5	127	y	0.03	3	91	3	91	y	0.04	5	116	5	116	y	0.04	2	43	2	43	y	0.03	3	103	3	103	y	0.05	3	59	3	59	y	0.00	0	79	0	79	n	0.03	4	111	4	111	y	0.02	2	92	2	92	y	0.00	0	138	0	138	n	ENSMUSG00000029328.16	Hnrnpdl	chr5	protein_coding	heterogeneous nuclear ribonucleoprotein D-like
known_NIR_13863	chr5	100516211	100517455	-	100516211	100523067	A5SS	ENSMUST00000182569.2	known	0.99	114	1	114	1	n	1.00	146	0	146	0	n	0.99	218	3	218	3	y	1.00	157	0	157	0	n	0.98	200	5	200	5	y	0.97	106	3	106	3	y	0.98	135	3	135	3	y	0.98	104	2	104	2	y	0.97	99	3	99	3	y	0.98	164	4	164	4	y	0.96	146	6	146	6	y	0.99	140	2	140	2	y	ENSMUSG00000035325.17	Sec31a	chr5	protein_coding	Sec31 homolog A (S. cerevisiae)
known_NIR_13864	chr5	100516211	100521284	-	100516211	100517455	A5SS&ES	ENSMUST00000094578.11	known	0.16	22	114	22	114	y	0.14	24	146	24	146	y	0.15	37	218	37	218	y	0.15	28	157	28	157	y	0.18	44	200	44	200	y	0.20	26	106	26	106	y	0.19	31	135	31	135	y	0.21	27	104	27	104	y	0.17	21	99	21	99	y	0.18	36	164	36	164	y	0.13	21	146	21	146	y	0.17	28	140	28	140	y	ENSMUSG00000035325.17	Sec31a	chr5	protein_coding	Sec31 homolog A (S. cerevisiae)
known_NIR_13865	chr5	100516211	100521284	-	100516211;100517493	100517455;100521284	ES	ENSMUST00000182433.8	known	0.24	22	70.0	22	114;26	y	0.22	24	86.0	24	146;26	y	0.21	37	141.5	37	218;65	y	0.22	28	96.5	28	157;36	y	0.26	44	127.0	44	200;54	y	0.26	26	74.0	26	106;42	y	0.27	31	85.0	31	135;35	y	0.29	27	67.5	27	104;31	y	0.27	21	58.0	21	99;17	y	0.26	36	100.5	36	164;37	y	0.19	21	91.0	21	146;36	y	0.23	28	92.0	28	140;44	y	ENSMUSG00000035325.17	Sec31a	chr5	protein_coding	Sec31 homolog A (S. cerevisiae)
known_NIR_13866	chr5	100516211;100521574	100521284;100523067	-	100516211	100523067	cassetteExon	ENSMUST00000182569.2	known	0.99	84.5	1	22;147	1	n	1.00	92.5	0	24;161	0	n	0.98	121.5	3	37;206	3	y	1.00	96.0	0	28;164	0	n	0.96	121.5	5	44;199	5	y	0.96	70.5	3	26;115	3	y	0.97	101.5	3	31;172	3	y	0.98	85.0	2	27;143	2	y	0.96	74.5	3	21;128	3	y	0.97	123.0	4	36;210	4	y	0.94	102.5	6	21;184	6	y	0.98	94.5	2	28;161	2	y	ENSMUSG00000035325.17	Sec31a	chr5	protein_coding	Sec31 homolog A (S. cerevisiae)
known_NIR_13867	chr5	100517493	100521284	-	100517493	100521239	A5SS	ENSMUST00000094578.11	known	0.25	26	79	26	79	y	0.20	26	101	26	101	y	0.34	65	124	65	124	y	0.28	36	92	36	92	y	0.30	54	127	54	127	y	0.43	42	56	42	56	y	0.32	35	75	35	75	y	0.33	31	62	31	62	y	0.20	17	68	17	68	y	0.30	37	88	37	88	y	0.28	36	94	36	94	y	0.30	44	104	44	104	y	ENSMUSG00000035325.17	Sec31a	chr5	protein_coding	Sec31 homolog A (S. cerevisiae)
known_NIR_13868	chr5	100523190;100523912	100523820;100526687	-	100523190	100526687	cassetteExon	ENSMUST00000182569.2	known	0.12	13.5	103	14;13	103	y	0.10	13.0	111	12;14	111	y	0.13	28.5	189	29;28	189	y	0.15	21.5	120	23;20	120	y	0.10	18.5	161	14;23	161	y	0.13	14.5	100	16;13	100	y	0.19	28.0	117	30;26	117	y	0.10	13.0	111	12;14	111	y	0.13	14.0	96	13;15	96	y	0.17	26.0	127	35;17	127	y	0.13	16.0	109	16;16	109	y	0.14	22.0	130	22;22	130	y	ENSMUSG00000035325.17	Sec31a	chr5	protein_coding	Sec31 homolog A (S. cerevisiae)
known_NIR_13869	chr5	100534062	100536393	-	100534062	100538618	A5SS	ENSMUST00000182886.8	known	0.91	94	9	94	9	y	0.97	85	3	85	3	y	0.85	178	31	178	31	y	0.91	165	17	165	17	y	0.92	174	16	174	16	y	0.93	124	9	124	9	y	0.88	95	13	95	13	y	0.90	94	11	94	11	y	0.90	75	8	75	8	y	0.89	108	14	108	14	y	0.93	92	7	92	7	y	0.91	97	10	97	10	y	ENSMUSG00000035325.17	Sec31a	chr5	protein_coding	Sec31 homolog A (S. cerevisiae)
known_NIR_13870	chr5	100534062	100536927	-	100534062;100536470	100536393;100536927	ES	ENSMUST00000094578.11	known	0.18	22	99.0	22	94;104	y	0.18	19	87.5	19	85;90	y	0.15	34	187.5	34	178;197	y	0.15	29	160.0	29	165;155	y	0.11	24	194.5	24	174;215	y	0.08	11	121.0	11	124;118	y	0.18	24	106.5	24	95;118	y	0.06	7	103.0	7	94;112	y	0.16	17	87.0	17	75;99	y	0.16	23	116.5	23	108;125	y	0.18	21	96.5	21	92;101	y	0.20	30	120.5	30	97;144	y	ENSMUSG00000035325.17	Sec31a	chr5	protein_coding	Sec31 homolog A (S. cerevisiae)
known_NIR_13871	chr5	100534062;100536965	100536927;100538618	-	100534062	100538618	cassetteExon	ENSMUST00000182886.8	known	0.89	74.5	9	22;127	9	y	0.95	54.5	3	19;90	3	y	0.78	110.0	31	34;186	31	y	0.83	83.5	17	29;138	17	y	0.88	113.5	16	24;203	16	y	0.88	66.0	9	11;121	9	y	0.85	72.5	13	24;121	13	y	0.84	58.5	11	7;110	11	y	0.88	56.5	8	17;96	8	y	0.84	74.0	14	23;125	14	y	0.90	66.0	7	21;111	7	y	0.90	89.0	10	30;148	10	y	ENSMUSG00000035325.17	Sec31a	chr5	protein_coding	Sec31 homolog A (S. cerevisiae)
known_NIR_13872	chr5	100628180	100633662	-	100628180	100632999	A5SS	ENSMUST00000239512.1	known	0.20	2	8	2	8	y	0.25	1	3	1	3	n	0.40	4	6	4	6	y	0.25	3	9	3	9	y	0.33	2	4	2	4	n	0.00	0	2	0	2	n	0.09	1	10	1	10	n	0.33	1	2	1	2	n	1.00	2	0	2	0	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.75	6	2	6	2	n	ENSMUSG00000118665.1	Lin54	chr5	protein_coding	--
known_NIR_13873	chr5	100633714	100646162	-	100633714	100648360	A5SS	ENSMUST00000239512.1	known	0.33	1	2	1	2	n	-	-	-	-	-	-	0.67	4	2	4	2	n	0.50	2	2	2	2	n	0.33	2	4	2	4	n	0.00	0	1	0	1	n	1.00	4	0	4	0	n	1.00	3	0	3	0	n	0.25	1	3	1	3	n	0.20	2	8	2	8	y	1.00	1	0	1	0	n	0.25	2	6	2	6	n	ENSMUSG00000118665.1	Lin54	chr5	protein_coding	--
known_NIR_13874	chr5	100666416	100676405	+	100666416;100675919	100675840;100676405	ES	ENSMUST00000045993.15	known	0.04	4	92.5	4	90;95	y	0.05	3	54.5	3	52;57	y	0.03	3	111.5	3	96;127	y	0.00	0	92.5	0	97;88	n	0.02	2	95.0	2	94;96	y	0.05	3	59.5	3	52;67	y	0.03	3	105.5	3	92;119	y	0.00	0	73.0	0	66;80	n	0.04	3	65.0	3	63;67	y	0.03	3	116.0	3	105;127	y	0.00	0	75.0	0	70;80	n	0.04	4	98.5	4	85;112	y	ENSMUSG00000035297.15	Cops4	chr5	protein_coding	COP9 signalosome subunit 4
known_NIR_13875	chr5	100666801	100675840	+	100666416	100675840	A5SS	ENSMUST00000045993.15	known	0.01	1	90	1	90	n	0.00	0	52	0	52	n	0.00	0	96	0	96	n	0.00	0	97	0	97	n	0.00	0	94	0	94	n	0.02	1	52	1	52	n	0.00	0	92	0	92	n	0.00	0	66	0	66	n	0.02	1	63	1	63	n	0.00	0	105	0	105	n	0.00	0	70	0	70	n	0.03	3	85	3	85	y	ENSMUSG00000035297.15	Cops4	chr5	protein_coding	COP9 signalosome subunit 4
known_NIR_13876	chr5	100811567	100821855	-	100811567;100815924	100815758;100821855	ES	ENSMUST00000031262.9	known	0.00	0	67.5	0	81;54	n	0.02	1	45.0	1	60;30	n	0.04	3	77.0	3	84;70	y	0.05	5	86.0	5	107;65	y	0.09	10	102.5	10	127;78	y	0.11	7	56.5	7	67;46	y	0.02	2	106.5	2	146;67	y	0.05	3	52.0	3	60;44	y	0.02	1	63.5	1	82;45	n	0.08	10	111.5	10	136;87	y	0.04	3	78.0	3	102;54	y	0.01	1	101.5	1	119;84	n	ENSMUSG00000029319.9	Coq2	chr5	protein_coding	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase
known_NIR_13877	chr5	100934948	100937992	-	100934948	100938005	A5SS	ENSMUST00000044684.14	known	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.33	6	12	6	12	y	0.50	3	3	3	3	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.50	2	2	2	2	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.67	2	1	2	1	n	0.20	1	4	1	4	n	ENSMUSG00000035266.17	Helq	chr5	protein_coding	helicase, POLQ-like
known_NIR_13878	chr5	100946726	100949774	+	100946726	100947418	3pMXE	ENSMUST00000140296.2	known	0.02	4	190	4	190	y	0.03	6	228	6	228	y	0.02	4	243	4	243	y	0.01	3	208	3	208	y	0.02	4	237	4	237	y	0.00	0	112	0	112	n	0.02	5	306	5	306	y	0.04	5	129	5	129	y	0.01	1	187	1	187	n	0.02	6	283	6	283	y	0.02	4	217	4	217	y	0.03	8	244	8	244	y	ENSMUSG00000016833.15	Mrps18c	chr5	protein_coding	mitochondrial ribosomal protein S18C
known_NIR_13879	chr5	100946726	100949774	+	100946726;100947479	100947418;100949774	ES	ENSMUST00000016977.15	known	0.02	4	184.5	4	190;179	y	0.03	6	233.5	6	228;239	y	0.02	4	255.5	4	243;268	y	0.01	3	201.0	3	208;194	y	0.02	4	241.0	4	237;245	y	0.00	0	120.0	0	112;128	n	0.02	5	295.0	5	306;284	y	0.04	5	125.0	5	129;121	y	0.01	1	194.0	1	187;201	n	0.02	6	295.0	6	283;307	y	0.02	4	218.5	4	217;220	y	0.03	8	253.0	8	244;262	y	ENSMUSG00000016833.15	Mrps18c	chr5	protein_coding	mitochondrial ribosomal protein S18C
known_NIR_13880	chr5	100949857	100951836	+	100949857;100950976	100950919;100951836	ES	ENSMUST00000016977.15	known	0.01	2	223.0	2	233;213	y	0.02	4	247.5	4	249;246	y	0.00	1	239.5	1	246;233	n	0.01	1	177.0	1	190;164	n	0.02	5	221.5	5	227;216	y	0.00	0	129.0	0	132;126	n	0.00	0	276.0	0	275;277	n	0.00	0	146.5	0	144;149	n	0.00	0	189.5	0	198;181	n	0.01	2	295.5	2	335;256	y	0.00	1	242.5	1	262;223	n	0.01	2	258.0	2	243;273	y	ENSMUSG00000016833.15	Mrps18c	chr5	protein_coding	mitochondrial ribosomal protein S18C
known_NIR_13881	chr5	100954756	100957425	-	100954756	100957420	A5SS	ENSMUST00000153302.8	known	0.95	20	1	20	1	n	0.75	12	4	12	4	y	1.00	19	0	19	0	n	1.00	9	0	9	0	n	0.93	13	1	13	1	n	1.00	12	0	12	0	n	1.00	11	0	11	0	n	1.00	15	0	15	0	n	1.00	18	0	18	0	n	0.96	23	1	23	1	n	1.00	13	0	13	0	n	1.00	13	0	13	0	n	ENSMUSG00000035234.19	Abraxas1	chr5	protein_coding	BRCA1 A complex subunit
known_NIR_13882	chr5	102023875;102025925	102025872;102030289	-	102023875	102030289	cassetteExon	ENSMUST00000053177.14	known	0.37	3.5	6	7;0	6	n	0.85	5.5	1	7;4	1	n	0.82	13.5	3	20;7	3	y	0.59	10.0	7	14;6	7	y	0.88	15.0	2	16;14	2	y	0.71	10.0	4	13;7	4	y	0.58	9.5	7	12;7	7	y	0.64	10.5	6	13;8	6	y	0.43	4.5	6	5;4	6	y	0.54	9.5	8	10;9	8	y	0.85	11.0	2	13;9	2	y	0.51	9.5	9	12;7	9	y	ENSMUSG00000043940.16	Wdfy3	chr5	protein_coding	WD repeat and FYVE domain containing 3
known_NIR_13883	chr5	102034936	102035953	-	102034933	102035953	A3SS	ENSMUST00000053177.14	known	1.00	7	0	7	0	n	0.91	10	1	10	1	n	0.86	18	3	18	3	y	0.90	9	1	9	1	n	0.94	17	1	17	1	n	1.00	8	0	8	0	n	0.80	12	3	12	3	y	0.94	15	1	15	1	n	1.00	6	0	6	0	n	1.00	18	0	18	0	n	0.90	9	1	9	1	n	1.00	22	0	22	0	n	ENSMUSG00000043940.16	Wdfy3	chr5	protein_coding	WD repeat and FYVE domain containing 3
known_NIR_13884	chr5	102046427	102047925	-	102046427	102047880	A5SS	ENSMUST00000053177.14	known	0.90	9	1	9	1	n	1.00	3	0	3	0	n	0.56	10	8	10	8	y	0.82	14	3	14	3	y	0.83	10	2	10	2	y	0.75	3	1	3	1	n	0.60	3	2	3	2	n	0.46	6	7	6	7	y	1.00	8	0	8	0	n	0.55	6	5	6	5	y	0.33	1	2	1	2	n	0.88	7	1	7	1	n	ENSMUSG00000043940.16	Wdfy3	chr5	protein_coding	WD repeat and FYVE domain containing 3
known_NIR_13885	chr5	102078871	102085148	-	102078871;102083939	102083856;102085148	ES	ENSMUST00000053177.14	known	0.00	0	7.5	0	7;8	n	0.50	2	2.0	2	0;4	n	0.20	1	4.0	1	6;2	n	0.32	3	6.5	3	7;6	y	0.20	1	4.0	1	5;3	n	0.71	6	2.5	6	2;3	y	0.12	1	7.5	1	9;6	n	0.25	3	9.0	3	10;8	y	0.22	2	7.0	2	10;4	y	0.00	0	4.0	0	5;3	n	0.00	0	4.0	0	6;2	n	0.40	3	4.5	3	8;1	n	ENSMUSG00000043940.16	Wdfy3	chr5	protein_coding	WD repeat and FYVE domain containing 3
known_NIR_13886	chr5	102994035	103008196	+	102989278	103008196	A5SS	ENSMUST00000073302.12	known	0.25	1	3	1	3	n	0.60	3	2	3	2	n	0.00	0	6	0	6	n	0.57	4	3	4	3	n	0.50	1	1	1	1	n	0.14	1	6	1	6	n	0.22	2	7	2	7	n	0.00	0	3	0	3	n	0.12	1	7	1	7	n	0.45	5	6	5	6	y	0.25	3	9	3	9	y	0.00	0	1	0	1	n	ENSMUSG00000057315.15	Arhgap24	chr5	protein_coding	Rho GTPase activating protein 24
known_NIR_13887	chr5	103902211	103930990	+	103863271	103930990	A5SS	ENSMUST00000126335.2	known	1.00	4	0	4	0	n	0.67	2	1	2	1	n	0.64	7	4	7	4	y	1.00	4	0	4	0	n	0.71	12	5	12	5	y	1.00	8	0	8	0	n	0.75	6	2	6	2	n	0.75	6	2	6	2	n	1.00	6	0	6	0	n	1.00	6	0	6	0	n	0.83	5	1	5	1	n	0.89	8	1	8	1	n	ENSMUSG00000029313.19	Aff1	chr5	protein_coding	AF4/FMR2 family, member 1
known_NIR_13888	chr5	103902611	103930990	+	103863271	103930990	A5SS	ENSMUST00000126335.2	known	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.00	0	4	0	4	n	1.00	5	0	5	0	n	0.50	5	5	5	5	y	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	3	0	3	0	n	0.75	3	1	3	1	n	0.00	0	1	0	1	n	ENSMUSG00000029313.19	Aff1	chr5	protein_coding	AF4/FMR2 family, member 1
known_NIR_13889	chr5	103902611	103930990	+	103902211	103930990	A5SS	ENSMUST00000054979.10	known	0.20	1	4	1	4	n	0.33	1	2	1	2	n	0.00	0	7	0	7	n	0.56	5	4	5	4	n	0.29	5	12	5	12	y	0.00	0	8	0	8	n	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.33	3	6	3	6	n	0.38	3	5	3	5	n	0.00	0	8	0	8	n	ENSMUSG00000029313.19	Aff1	chr5	protein_coding	AF4/FMR2 family, member 1
known_NIR_13890	chr5	104111729	104113641	-	104104152	104113641	A3SS	ENSMUST00000048118.15	known	1.00	1964	5	1964	5	y	1.00	2307	1	2307	1	n	1.00	1416	3	1416	3	y	1.00	1915	2	1915	2	y	1.00	2095	0	2095	0	n	1.00	837	0	837	0	n	1.00	2289	7	2289	7	y	1.00	1187	3	1187	3	y	1.00	1368	3	1368	3	y	1.00	2417	4	2417	4	y	1.00	2054	2	2054	2	y	1.00	2705	5	2705	5	y	ENSMUSG00000034528.16	Hsd17b13	chr5	protein_coding	hydroxysteroid (17-beta) dehydrogenase 13
known_NIR_13891	chr5	104118759	104124972	-	104118759;104120540	104120433;104124972	ES	ENSMUST00000048118.15	known	0.00	0	1329.0	0	1421;1237	n	0.00	0	1377.0	0	1448;1306	n	0.00	0	1029.0	0	1059;999	n	0.00	0	1515.0	0	1558;1472	n	0.00	3	1505.0	3	1579;1431	y	0.00	0	655.5	0	696;615	n	0.00	0	1459.0	0	1512;1406	n	0.00	0	912.0	0	957;867	n	0.00	0	927.5	0	905;950	n	0.00	0	1641.0	0	1766;1516	n	0.00	0	1235.0	0	1318;1152	n	0.00	4	1955.5	4	1983;1928	y	ENSMUSG00000034528.16	Hsd17b13	chr5	protein_coding	hydroxysteroid (17-beta) dehydrogenase 13
known_NIR_13892	chr5	104195012	104198444	+	104194704	104198444	A5SS	ENSMUST00000128511.8	known	0.81	52	12	52	12	y	0.75	45	15	45	15	y	0.79	50	13	50	13	y	0.69	52	23	52	23	y	0.90	72	8	72	8	y	0.86	32	5	32	5	y	0.81	64	15	64	15	y	0.85	28	5	28	5	y	0.66	35	18	35	18	y	0.81	69	16	69	16	y	0.70	51	22	51	22	y	0.73	59	22	59	22	y	ENSMUSG00000029310.14	Nudt9	chr5	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 9
known_NIR_13893	chr5	104583062	104584132	+	104583062	104584241	A3SS	ENSMUST00000086833.13	known	0.00	0	118	0	118	n	0.00	0	135	0	135	n	0.00	2	478	2	478	y	0.00	0	81	0	81	n	0.00	0	196	0	196	n	0.00	0	69	0	69	n	0.00	0	156	0	156	n	0.00	0	143	0	143	n	0.00	0	75	0	75	n	0.00	0	109	0	109	n	0.00	0	93	0	93	n	0.00	0	116	0	116	n	ENSMUSG00000029304.15	Spp1	chr5	protein_coding	secreted phosphoprotein 1
known_NIR_13894	chr5	104583062	104584138	+	104583062	104584241	A3SS	ENSMUST00000086833.13	known	0.00	0	118	0	118	n	0.00	0	135	0	135	n	0.00	2	478	2	478	y	0.00	0	81	0	81	n	0.01	1	196	1	196	n	0.00	0	69	0	69	n	0.01	1	156	1	156	n	0.00	0	143	0	143	n	0.00	0	75	0	75	n	0.01	1	109	1	109	n	0.00	0	93	0	93	n	0.00	0	116	0	116	n	ENSMUSG00000029304.15	Spp1	chr5	protein_coding	secreted phosphoprotein 1
known_NIR_13895	chr5	104583114	104584241	+	104583062	104584241	A5SS	ENSMUST00000086833.13	known	0.06	7	118	7	118	y	0.06	9	135	9	135	y	0.08	42	478	42	478	y	0.02	2	81	2	81	y	0.08	16	196	16	196	y	0.10	8	69	8	69	y	0.04	7	156	7	156	y	0.05	8	143	8	143	y	0.03	2	75	2	75	y	0.03	3	109	3	109	y	0.05	5	93	5	93	y	0.03	3	116	3	116	y	ENSMUSG00000029304.15	Spp1	chr5	protein_coding	secreted phosphoprotein 1
known_NIR_13896	chr5	105084484	105086049	-	105083969	105086049	A3SS	ENSMUST00000031239.13	known	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.50	3	3	3	3	n	0.37	7	12	7	12	y	-	-	-	-	-	-	0.33	3	6	3	6	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.33	1	2	1	2	n	ENSMUSG00000029299.15	Abcg3	chr5	protein_coding	ATP binding cassette subfamily G member 3
known_NIR_13897	chr5	105428430	105438703	-	105428430;105436920	105436793;105438703	ES	ENSMUST00000050011.10	known	0.00	0	7.5	0	5;10	n	0.20	1	4.0	1	0;8	n	0.03	1	36.0	1	24;48	n	0.08	1	11.0	1	10;12	n	0.22	2	7.0	2	6;8	y	0.05	1	19.0	1	18;20	n	0.00	0	6.5	0	4;9	n	0.00	0	13.0	0	7;19	n	0.00	0	16.5	0	11;22	n	0.00	0	14.5	0	9;20	n	0.00	0	3.5	0	4;3	n	0.35	4	7.5	4	9;6	y	ENSMUSG00000079362.6	Gm43302	chr5	protein_coding	predicted gene 43302
known_NIR_13898	chr5	105848951	105876589	+	105848951	105880096	A3SS	ENSMUST00000120847.8	known	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.15	2	11	2	11	y	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	ENSMUSG00000046079.17	Lrrc8d	chr5	protein_coding	leucine rich repeat containing 8D
known_NIR_13899	chr5	105848951	105880096	+	105848120	105880096	A5SS	ENSMUST00000060531.16	known	0.73	11	4	11	4	y	0.67	2	1	2	1	n	0.55	11	9	11	9	y	0.71	10	4	10	4	y	0.71	15	6	15	6	y	0.50	5	5	5	5	y	0.88	14	2	14	2	y	0.60	6	4	6	4	y	0.77	10	3	10	3	y	0.62	13	8	13	8	y	0.43	6	8	6	8	y	0.62	13	8	13	8	y	ENSMUSG00000046079.17	Lrrc8d	chr5	protein_coding	leucine rich repeat containing 8D
known_NIR_13900	chr5	105880240	105978233	+	105880240	105959590	3pMXE	ENSMUST00000060531.16	known	0.00	0	39	0	39	n	0.00	0	20	0	20	n	0.00	0	42	0	42	n	0.00	0	48	0	48	n	0.00	0	59	0	59	n	0.00	0	42	0	42	n	0.00	0	44	0	44	n	0.00	0	30	0	30	n	0.00	0	47	0	47	n	0.03	2	63	2	63	y	0.00	0	34	0	34	n	0.00	0	29	0	29	n	ENSMUSG00000046079.17	Lrrc8d	chr5	protein_coding	leucine rich repeat containing 8D
known_NIR_13901	chr5	106026386	106026615	+	106024564	106026615	A5SS	ENSMUST00000150440.8	known	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	18	0	18	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	18	0	18	n	0.10	1	9	1	9	n	0.14	2	12	2	12	y	ENSMUSG00000029290.13	Zfp326	chr5	protein_coding	zinc finger protein 326
known_NIR_13902	chr5	106034142	106038984	+	106036705	106038984	A5SS&ES	ENSMUST00000150440.8	known	0.00	0	25	0	25	n	0.09	1	10	1	10	n	0.15	4	22	4	22	y	0.06	2	29	2	29	y	0.08	3	34	3	34	y	0.19	3	13	3	13	y	0.07	2	27	2	27	y	0.00	0	19	0	19	n	0.00	0	14	0	14	n	0.10	4	35	4	35	y	0.00	0	14	0	14	n	0.19	4	17	4	17	y	ENSMUSG00000029290.13	Zfp326	chr5	protein_coding	zinc finger protein 326
known_NIR_13903	chr5	106767508	106782697	-	106767508	106814651	A5SS	ENSMUST00000112695.4	known	0.93	14	1	14	1	n	0.91	10	1	10	1	n	0.93	27	2	27	2	y	0.90	18	2	18	2	y	0.95	20	1	20	1	n	1.00	11	0	11	0	n	1.00	22	0	22	0	n	0.87	13	2	13	2	y	0.75	12	4	12	4	y	0.89	25	3	25	3	y	1.00	11	0	11	0	n	0.93	14	1	14	1	n	ENSMUSG00000049606.17	Zfp644	chr5	protein_coding	zinc finger protein 644
known_NIR_13904	chr5	106767508	106782697	-	106767508	106844398	A5SS	ENSMUST00000149128.3	known	1.00	14	0	14	0	n	1.00	10	0	10	0	n	1.00	27	0	27	0	n	0.90	18	2	18	2	y	1.00	20	0	20	0	n	1.00	11	0	11	0	n	1.00	22	0	22	0	n	1.00	13	0	13	0	n	0.92	12	1	12	1	n	0.96	25	1	25	1	n	0.69	11	5	11	5	y	1.00	14	0	14	0	n	ENSMUSG00000098302.2	Gm28039	chr5	lncRNA	predicted gene, 28039
known_NIR_13905	chr5	106786501	106814651	-	106767508	106814651	A3SS	ENSMUST00000112695.4	known	0.89	8	1	8	1	n	0.83	5	1	5	1	n	0.82	9	2	9	2	y	0.78	7	2	7	2	n	0.89	8	1	8	1	n	1.00	2	0	2	0	n	1.00	4	0	4	0	n	0.78	7	2	7	2	n	0.50	4	4	4	4	n	0.77	10	3	10	3	y	-	-	-	-	-	-	0.75	3	1	3	1	n	ENSMUSG00000049606.17	Zfp644	chr5	protein_coding	zinc finger protein 644
known_NIR_13906	chr5	106786501	106844398	-	106786501	106814651	A5SS&ES	ENSMUST00000137285.8	known	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.18	2	9	2	9	y	0.30	3	7	3	7	y	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.40	2	3	2	3	n	ENSMUSG00000049606.17	Zfp644	chr5	protein_coding	zinc finger protein 644
known_NIR_13907	chr5	106786501	106844398	-	106786501;106814711	106814651;106844398	ES	ENSMUST00000112696.8	known	0.00	0	4.5	0	8;1	n	0.00	0	3.0	0	5;1	n	0.29	2	5.0	2	9;1	n	0.38	3	5.0	3	7;3	y	0.00	0	5.0	0	8;2	n	0.00	0	2.0	0	2;2	n	0.00	0	2.5	0	4;1	n	0.00	0	4.5	0	7;2	n	0.00	0	2.0	0	4;0	n	0.00	0	5.5	0	10;1	n	0.00	0	1.0	0	0;2	n	0.50	2	2.0	2	3;1	n	ENSMUSG00000049606.17	Zfp644	chr5	protein_coding	zinc finger protein 644
known_NIR_13908	chr5	107517230	107518024	+	107517230	107518021	A3SS	ENSMUST00000031215.15	known	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.43	3	4	3	4	n	0.57	4	3	4	3	n	0.36	5	9	5	9	y	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.25	1	3	1	3	n	1.00	3	0	3	0	n	0.33	2	4	2	4	n	-	-	-	-	-	-	0.29	2	5	2	5	n	ENSMUSG00000029279.16	Brdt	chr5	protein_coding	bromodomain, testis-specific
known_NIR_13909	chr5	107524228	107525770	+	107524228;107525081	107524876;107525770	ES	ENSMUST00000031215.15	known	0.43	3	4.0	3	3;5	y	0.88	7	1.0	7	0;2	n	0.20	1	4.0	1	3;5	n	0.33	2	4.0	2	2;6	y	0.47	7	8.0	7	6;10	y	0.60	3	2.0	3	1;3	n	0.20	2	8.0	2	8;8	y	0.24	2	6.5	2	10;3	y	0.27	2	5.5	2	4;7	y	0.47	4	4.5	4	4;5	y	0.00	0	5.0	0	4;6	n	0.38	4	6.5	4	8;5	y	ENSMUSG00000029279.16	Brdt	chr5	protein_coding	bromodomain, testis-specific
known_NIR_13910	chr5	107745951	107746388	+	107745726	107746388	A5SS	ENSMUST00000112651.8	known	0.00	0	25	0	25	n	0.00	0	23	0	23	n	0.03	1	37	1	37	n	0.00	0	26	0	26	n	0.00	0	32	0	32	n	0.11	2	16	2	16	y	0.00	0	33	0	33	n	0.00	0	13	0	13	n	0.00	0	21	0	21	n	0.04	1	22	1	22	n	0.00	0	15	0	15	n	0.03	1	31	1	31	n	ENSMUSG00000033773.15	Rpap2	chr5	protein_coding	RNA polymerase II associated protein 2
known_NIR_13911	chr5	107746169	107746388	+	107745726	107746388	A5SS	ENSMUST00000112651.8	known	0.00	0	25	0	25	n	0.00	0	23	0	23	n	0.00	0	37	0	37	n	0.04	1	26	1	26	n	0.00	0	32	0	32	n	0.06	1	16	1	16	n	0.06	2	33	2	33	y	0.00	0	13	0	13	n	0.00	0	21	0	21	n	0.00	0	22	0	22	n	0.00	0	15	0	15	n	0.03	1	31	1	31	n	ENSMUSG00000033773.15	Rpap2	chr5	protein_coding	RNA polymerase II associated protein 2
known_NIR_13912	chr5	107749725	107751392	+	107749711	107751392	A5SS	ENSMUST00000112650.8	known	0.00	0	18	0	18	n	0.22	2	7	2	7	n	0.00	0	30	0	30	n	0.08	2	23	2	23	y	0.19	3	13	3	13	y	0.00	0	10	0	10	n	0.05	1	19	1	19	n	0.00	0	13	0	13	n	0.17	2	10	2	10	y	0.00	0	18	0	18	n	0.00	0	16	0	16	n	0.05	1	19	1	19	n	ENSMUSG00000033773.15	Rpap2	chr5	protein_coding	RNA polymerase II associated protein 2
known_NIR_13913	chr5	107780997	107789820	+	107780997	107803023	A3SS	ENSMUST00000112651.8	known	0.03	1	29	1	29	n	0.04	1	24	1	24	n	0.04	1	27	1	27	n	0.07	2	26	2	26	y	0.00	0	40	0	40	n	0.00	0	18	0	18	n	0.00	0	31	0	31	n	0.00	0	21	0	21	n	0.13	3	20	3	20	y	0.03	1	29	1	29	n	0.00	0	24	0	24	n	0.00	0	36	0	36	n	ENSMUSG00000033773.15	Rpap2	chr5	protein_coding	RNA polymerase II associated protein 2
known_NIR_13914	chr5	107780997	107803023	+	107780997	107789649	3pMXE	ENSMUST00000112650.8	known	0.91	29	3	29	3	y	0.92	24	2	24	2	y	0.93	27	2	27	2	y	0.96	26	1	26	1	n	0.91	40	4	40	4	y	0.90	18	2	18	2	y	0.91	31	3	31	3	y	0.88	21	3	21	3	y	0.91	20	2	20	2	y	0.76	29	9	29	9	y	0.89	24	3	24	3	y	0.88	36	5	36	5	y	ENSMUSG00000033773.15	Rpap2	chr5	protein_coding	RNA polymerase II associated protein 2
known_NIR_13915	chr5	107947126	107957456	-	107947126	107960224	A5SS	ENSMUST00000112642.8	known	0.93	43	3	43	3	y	0.89	47	6	47	6	y	0.80	72	18	72	18	y	0.85	75	13	75	13	y	0.80	119	29	119	29	y	0.80	37	9	37	9	y	0.89	68	8	68	8	y	0.88	75	10	75	10	y	0.81	50	12	50	12	y	0.81	75	18	75	18	y	0.84	54	10	54	10	y	0.91	112	11	112	11	y	ENSMUSG00000011831.17	Evi5	chr5	protein_coding	ecotropic viral integration site 5
known_NIR_13916	chr5	107958188	107960224	-	107947126	107960224	A3SS	ENSMUST00000112642.8	known	0.95	53	3	53	3	y	0.88	45	6	45	6	y	0.81	76	18	76	18	y	0.85	71	13	71	13	y	0.76	91	29	91	29	y	0.82	42	9	42	9	y	0.91	77	8	77	8	y	0.86	59	10	59	10	y	0.76	37	12	37	12	y	0.82	82	18	82	18	y	0.86	61	10	61	10	y	0.90	98	11	98	11	y	ENSMUSG00000011831.17	Evi5	chr5	protein_coding	ecotropic viral integration site 5
known_NIR_13917	chr5	107990166	108016104	-	107990166	108016657	A5SS	ENSMUST00000128723.8	known	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	23	0	23	n	0.05	1	20	1	20	n	0.00	0	17	0	17	n	0.00	0	13	0	13	n	0.11	2	16	2	16	y	0.00	0	8	0	8	n	0.10	1	9	1	9	n	0.00	0	21	0	21	n	0.00	0	14	0	14	n	0.00	0	19	0	19	n	ENSMUSG00000011831.17	Evi5	chr5	protein_coding	ecotropic viral integration site 5
known_NIR_13918	chr5	107990166	108016104	-	107990166	108020467	A5SS	ENSMUST00000132482.8	known	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.25	1	3	1	3	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.14	2	12	2	12	y	0.00	0	5	0	5	n	0.17	1	5	1	5	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	ENSMUSG00000011831.17	Evi5	chr5	protein_coding	ecotropic viral integration site 5
known_NIR_13919	chr5	107990166	108016657	-	107990166	108022855	A5SS	ENSMUST00000112642.8	known	0.78	7	2	7	2	n	0.62	5	3	5	3	n	0.77	23	7	23	7	y	0.80	20	5	20	5	y	0.61	17	11	17	11	y	0.81	13	3	13	3	y	0.84	16	3	16	3	y	0.50	8	8	8	8	y	0.64	9	5	9	5	y	0.78	21	6	21	6	y	0.74	14	5	14	5	y	0.76	19	6	19	6	y	ENSMUSG00000011831.17	Evi5	chr5	protein_coding	ecotropic viral integration site 5
known_NIR_13920	chr5	107990166	108020467	-	107990166	108016657	5pMXE	ENSMUST00000128723.8	known	0.00	0	7	0	7	n	0.38	3	5	3	5	n	0.26	8	23	8	23	y	0.13	3	20	3	20	y	0.32	8	17	8	17	y	0.24	4	13	4	13	y	0.43	12	16	12	16	y	0.38	5	8	5	8	y	0.36	5	9	5	9	y	0.30	9	21	9	21	y	0.26	5	14	5	14	y	0.27	7	19	7	19	y	ENSMUSG00000011831.17	Evi5	chr5	protein_coding	ecotropic viral integration site 5
known_NIR_13921	chr5	107990166;108020521	108020467;108022855	-	107990166	108022855	cassetteExon	ENSMUST00000112642.8	known	0.83	10.0	2	0;20	2	n	0.71	7.5	3	3;12	3	y	0.68	15.0	7	8;22	7	y	0.69	11.0	5	3;19	5	y	0.70	25.5	11	8;43	11	y	0.74	8.5	3	4;13	3	y	0.89	25.5	3	12;39	3	y	0.56	10.0	8	5;15	8	y	0.71	12.0	5	5;19	5	y	0.77	20.5	6	9;32	6	y	0.72	13.0	5	5;21	5	y	0.77	20.5	6	7;34	6	y	ENSMUSG00000011831.17	Evi5	chr5	protein_coding	ecotropic viral integration site 5
known_NIR_13922	chr5	107998170	108020467	-	107990166	108020467	A3SS	ENSMUST00000132482.8	known	1.00	28	0	28	0	n	0.86	19	3	19	3	y	0.58	11	8	11	8	y	0.86	18	3	18	3	y	0.83	38	8	38	8	y	0.56	5	4	5	4	n	0.74	35	12	35	12	y	0.83	24	5	24	5	y	0.80	20	5	20	5	y	0.81	39	9	39	9	y	0.82	23	5	23	5	y	0.81	29	7	29	7	y	ENSMUSG00000011831.17	Evi5	chr5	protein_coding	ecotropic viral integration site 5
known_NIR_13923	chr5	108048937	108049736	+	108048512	108049736	A5SS	ENSMUST00000082223.13	known	0.00	0	832	0	832	n	0.00	1	811	1	811	n	0.00	2	1361	2	1361	y	0.00	0	803	0	803	n	0.00	0	1239	0	1239	n	0.00	0	687	0	687	n	0.00	1	1112	1	1112	n	0.00	0	656	0	656	n	0.00	0	654	0	654	n	0.00	1	975	1	975	n	0.00	1	796	1	796	n	0.00	0	1108	0	1108	n	ENSMUSG00000058558.13	Rpl5	chr5	protein_coding	ribosomal protein L5
known_NIR_13924	chr5	108213831	108215326	+	108213831	108217028	A3SS	ENSMUST00000199194.2	known	1.00	2	0	2	0	n	-	-	-	-	-	-	0.23	3	10	3	10	y	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	1.00	2	0	2	0	n	0.25	1	3	1	3	n	0.67	2	1	2	1	n	0.00	0	3	0	3	n	0.30	3	7	3	7	y	ENSMUSG00000029267.18	Mtf2	chr5	protein_coding	metal response element binding transcription factor 2
known_NIR_13925	chr5	108213831	108228691	+	108213831	108217028	3pMXE	ENSMUST00000199194.2	known	1.00	5	0	5	0	n	-	-	-	-	-	-	0.29	4	10	4	10	y	0.25	1	3	1	3	n	0.56	5	4	5	4	n	0.60	6	4	6	4	y	0.62	5	3	5	3	n	1.00	5	0	5	0	n	0.40	2	3	2	3	n	0.75	3	1	3	1	n	0.25	1	3	1	3	n	0.36	4	7	4	7	y	ENSMUSG00000029267.18	Mtf2	chr5	protein_coding	metal response element binding transcription factor 2
known_NIR_13926	chr5	108213831	108228691	+	108213831;108221320	108221173;108228691	ES	ENSMUST00000131291.8	known	0.77	5	1.5	5	0;3	n	-	-	-	-	-	-	1.00	4	0.0	4	0;0	n	0.29	1	2.5	1	1;4	n	0.67	5	2.5	5	3;2	y	0.63	6	3.5	6	2;5	y	0.91	5	0.5	5	0;1	n	0.83	5	1.0	5	0;2	n	0.67	2	1.0	2	2;0	n	0.67	3	1.5	3	1;2	n	0.67	1	0.5	1	0;1	n	0.80	4	1.0	4	0;2	n	ENSMUSG00000029267.18	Mtf2	chr5	protein_coding	metal response element binding transcription factor 2
known_NIR_13927	chr5	108213831	108228691	+	108221320	108228691	5pMXE	ENSMUST00000163195.2	known	0.62	5	3	5	3	n	-	-	-	-	-	-	1.00	4	0	4	0	n	0.20	1	4	1	4	n	0.71	5	2	5	2	n	0.55	6	5	6	5	y	0.83	5	1	5	1	n	0.71	5	2	5	2	n	1.00	2	0	2	0	n	0.60	3	2	3	2	n	0.50	1	1	1	1	n	0.67	4	2	4	2	n	ENSMUSG00000029267.18	Mtf2	chr5	protein_coding	metal response element binding transcription factor 2
known_NIR_13928	chr5	108213831;108217229	108217028;108221173	+	108213831	108221173	cassetteExon	ENSMUST00000131291.8	known	1.00	1.0	0	0;2	0	n	-	-	-	-	-	-	1.00	5.0	0	10;0	0	n	0.78	3.5	1	3;4	1	n	0.54	3.5	3	4;3	3	y	0.60	3.0	2	4;2	2	n	1.00	2.5	0	3;2	0	n	1.00	1.0	0	0;2	0	n	0.50	2.0	2	3;1	2	n	0.33	0.5	1	1;0	1	n	1.00	2.0	0	3;1	0	n	1.00	3.5	0	7;0	0	n	ENSMUSG00000029267.18	Mtf2	chr5	protein_coding	metal response element binding transcription factor 2
known_NIR_13929	chr5	108247052;108247597	108247520;108248679	+	108247052	108248679	cassetteExon	ENSMUST00000131291.8	known	0.16	1.5	8	1;2	8	n	0.00	0.0	6	0;0	6	n	0.13	2.5	17	2;3	17	y	0.08	1.0	11	1;1	11	n	0.00	0.0	12	0;0	12	n	0.00	0.0	4	0;0	4	n	0.03	0.5	17	0;1	17	n	0.00	0.0	11	0;0	11	n	0.04	0.5	12	1;0	12	n	0.00	0.0	7	0;0	7	n	0.18	1.5	7	2;1	7	n	0.00	0.0	7	0;0	7	n	ENSMUSG00000029267.18	Mtf2	chr5	protein_coding	metal response element binding transcription factor 2
known_NIR_13930	chr5	108252184	108252261	+	108252184	108252292	A3SS	ENSMUST00000131291.8	known	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.07	2	27	2	27	y	0.00	0	14	0	14	n	0.00	0	27	0	27	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.07	1	14	1	14	n	0.00	0	26	0	26	n	0.00	0	16	0	16	n	0.00	0	18	0	18	n	ENSMUSG00000029267.18	Mtf2	chr5	protein_coding	metal response element binding transcription factor 2
known_NIR_13931	chr5	108273950	108277884	-	108254848	108277884	A3SS	ENSMUST00000118036.8	known	1.00	74	0	74	0	n	1.00	74	0	74	0	n	1.00	266	0	266	0	n	1.00	151	0	151	0	n	1.00	187	0	187	0	n	1.00	128	0	128	0	n	1.00	177	0	177	0	n	1.00	118	0	118	0	n	1.00	94	0	94	0	n	1.00	188	0	188	0	n	1.00	127	0	127	0	n	0.99	167	2	167	2	y	ENSMUSG00000063406.12	Tmed5	chr5	protein_coding	transmembrane p24 trafficking protein 5
known_NIR_13932	chr5	108277418	108277884	-	108273950	108277884	A3SS	ENSMUST00000002837.11	known	0.00	0	74	0	74	n	0.05	4	74	4	74	y	0.01	3	266	3	266	y	0.01	1	151	1	151	n	0.03	5	187	5	187	y	0.00	0	128	0	128	n	0.01	2	177	2	177	y	0.00	0	118	0	118	n	0.02	2	94	2	94	y	0.03	6	188	6	188	y	0.02	2	127	2	127	y	0.03	5	167	5	167	y	ENSMUSG00000063406.12	Tmed5	chr5	protein_coding	transmembrane p24 trafficking protein 5
known_NIR_13933	chr5	108425178	108426385	+	108423598	108426385	A5SS	ENSMUST00000031190.5	known	0.00	0	37	0	37	n	0.03	1	37	1	37	n	0.02	1	56	1	56	n	0.00	0	39	0	39	n	0.00	0	74	0	74	n	0.00	0	42	0	42	n	0.00	0	58	0	58	n	0.00	0	41	0	41	n	0.00	0	35	0	35	n	0.00	0	42	0	42	n	0.05	2	40	2	40	y	0.00	0	64	0	64	n	ENSMUSG00000029265.5	Dr1	chr5	protein_coding	down-regulator of transcription 1
known_NIR_13934	chr5	108581203	108581892	-	108581203;108581695	108581597;108581892	ES	ENSMUST00000049628.16	known	0.00	6	1287.0	6	712;1862	y	0.01	7	1371.0	7	721;2021	y	0.05	46	905.0	46	420;1390	y	0.00	0	1301.0	0	667;1935	n	0.01	8	1255.5	8	659;1852	y	0.02	14	549.5	14	280;819	y	0.01	9	1652.0	9	845;2459	y	0.00	3	671.5	3	331;1012	y	0.00	4	1229.5	4	668;1791	y	0.00	3	1854.0	3	1057;2651	y	0.00	2	1643.5	2	969;2318	y	0.00	5	1670.0	5	849;2491	y	ENSMUSG00000050856.17	Atp5k	chr5	protein_coding	ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E
known_NIR_13935	chr5	108724545	108728773	-	108724545	108724694	5pMXE	ENSMUST00000199010.2	known	0.98	82	2	82	2	y	0.94	89	6	89	6	y	0.98	134	3	134	3	y	0.93	89	7	89	7	y	0.95	121	6	121	6	y	0.96	49	2	49	2	y	0.92	108	9	108	9	y	0.97	64	2	64	2	y	0.90	57	6	57	6	y	0.88	98	13	98	13	y	0.90	88	10	88	10	y	0.91	80	8	80	8	y	ENSMUSG00000062234.15	Gak	chr5	protein_coding	cyclin G associated kinase
known_NIR_13936	chr5	108724545	108728773	-	108725115	108728773	3pMXE	ENSMUST00000196010.2	known	0.90	82	9	82	9	y	0.98	89	2	89	2	y	0.98	134	3	134	3	y	0.96	89	4	89	4	y	0.94	121	8	121	8	y	0.94	49	3	49	3	y	0.90	108	12	108	12	y	0.89	64	8	64	8	y	0.92	57	5	57	5	y	0.91	98	10	98	10	y	0.93	88	7	88	7	y	0.90	80	9	80	9	y	ENSMUSG00000062234.15	Gak	chr5	protein_coding	cyclin G associated kinase
known_NIR_13937	chr5	108724545;108725115	108724694;108728773	-	108724545	108728773	cassetteExon	ENSMUST00000156110.8	known	0.06	5.5	82	2;9	82	y	0.04	4.0	89	6;2	89	y	0.02	3.0	134	3;3	134	y	0.06	5.5	89	7;4	89	y	0.05	7.0	121	6;8	121	y	0.05	2.5	49	2;3	49	y	0.09	10.5	108	9;12	108	y	0.07	5.0	64	2;8	64	y	0.09	5.5	57	6;5	57	y	0.11	11.5	98	13;10	98	y	0.09	8.5	88	10;7	88	y	0.10	8.5	80	8;9	80	y	ENSMUSG00000062234.15	Gak	chr5	protein_coding	cyclin G associated kinase
known_NIR_13938	chr5	108731015	108733207	-	108732244	108733207	3pMXE	ENSMUST00000139303.2	known	0.14	13	77	13	77	y	0.19	15	64	15	64	y	0.12	16	119	16	119	y	0.18	17	78	17	78	y	0.14	17	102	17	102	y	0.13	8	55	8	55	y	0.13	17	110	17	110	y	0.14	8	50	8	50	y	0.14	8	50	8	50	y	0.12	13	95	13	95	y	0.14	11	70	11	70	y	0.15	13	72	13	72	y	ENSMUSG00000062234.15	Gak	chr5	protein_coding	cyclin G associated kinase
known_NIR_13939	chr5	108731015;108732244	108732098;108733207	-	108731015	108733207	cassetteExon	ENSMUST00000156110.8	known	0.85	72.0	13	67;77	13	y	0.82	69.5	15	75;64	15	y	0.87	108.0	16	97;119	16	y	0.84	92.5	17	107;78	17	y	0.86	106.0	17	110;102	17	y	0.87	51.5	8	48;55	8	y	0.86	103.0	17	96;110	17	y	0.86	49.5	8	49;50	8	y	0.89	63.0	8	76;50	8	y	0.89	104.0	13	113;95	13	y	0.87	76.5	11	83;70	11	y	0.86	79.5	13	87;72	13	y	ENSMUSG00000062234.15	Gak	chr5	protein_coding	cyclin G associated kinase
known_NIR_13940	chr5	108733400	108738970	-	108733400	108739011	A5SS	ENSMUST00000156110.8	known	0.02	2	81	2	81	y	0.02	2	79	2	79	y	0.03	3	112	3	112	y	0.02	2	95	2	95	y	0.01	1	117	1	117	n	0.03	2	61	2	61	y	0.05	6	108	6	108	y	0.00	0	48	0	48	n	0.01	1	71	1	71	n	0.05	7	137	7	137	y	0.03	2	73	2	73	y	0.02	3	120	3	120	y	ENSMUSG00000062234.15	Gak	chr5	protein_coding	cyclin G associated kinase
known_NIR_13941	chr5	108761504	108771126	-	108761504	108764775	A5SS&ES	ENSMUST00000199048.5	known	0.00	0	58	0	58	n	0.00	0	42	0	42	n	0.00	0	102	0	102	n	0.01	1	79	1	79	n	0.03	3	109	3	109	y	0.08	5	58	5	58	y	0.03	2	71	2	71	y	0.02	1	57	1	57	n	0.00	0	57	0	57	n	0.00	0	100	0	100	n	0.04	2	54	2	54	y	0.03	3	99	3	99	y	ENSMUSG00000062234.15	Gak	chr5	protein_coding	cyclin G associated kinase
known_NIR_13942	chr5	108761504	108771126	-	108761504;108764917	108764775;108771126	ES	ENSMUST00000046603.15	known	0.00	0	49.5	0	58;41	n	0.00	0	37.0	0	42;32	n	0.00	0	89.5	0	102;77	n	0.02	1	63.0	1	79;47	n	0.03	3	99.0	3	109;89	y	0.09	5	49.0	5	58;40	y	0.03	2	65.0	2	71;59	y	0.02	1	51.5	1	57;46	n	0.00	0	48.5	0	57;40	n	0.00	0	86.0	0	100;72	n	0.04	2	44.0	2	54;34	y	0.03	3	88.0	3	99;77	y	ENSMUSG00000062234.15	Gak	chr5	protein_coding	cyclin G associated kinase
known_NIR_13943	chr5	108761504;108764917	108764775;108772896	-	108761504;108772108	108771126;108772896	MXE	ENSMUST00000135225.8	known	0.61	30.0	19.5	58;2	0;39	n	0.56	24.0	19.0	42;6	0;38	n	0.56	53.5	41.5	102;5	0;83	n	0.56	41.0	32.5	79;3	1;64	n	0.54	56.5	49.0	109;4	3;95	y	0.61	32.0	20.5	58;6	5;36	y	0.56	38.5	30.0	71;6	2;58	y	0.54	29.5	25.5	57;2	1;50	n	0.53	28.5	25.0	57;0	0;50	n	0.55	53.0	42.5	100;6	0;85	n	0.50	28.0	28.5	54;2	2;55	y	0.61	53.5	34.0	99;8	3;65	y	ENSMUSG00000062234.15	Gak	chr5	protein_coding	cyclin G associated kinase
known_NIR_13944	chr5	108764917	108771126	-	108764917	108772896	A5SS	ENSMUST00000199048.5	known	0.95	41	2	41	2	y	0.84	32	6	32	6	y	0.94	77	5	77	5	y	0.94	47	3	47	3	y	0.96	89	4	89	4	y	0.87	40	6	40	6	y	0.91	59	6	59	6	y	0.96	46	2	46	2	y	1.00	40	0	40	0	n	0.92	72	6	72	6	y	0.94	34	2	34	2	y	0.91	77	8	77	8	y	ENSMUSG00000062234.15	Gak	chr5	protein_coding	cyclin G associated kinase
known_NIR_13945	chr5	108772108	108772896	-	108764917	108772896	A3SS	ENSMUST00000199048.5	known	0.95	39	2	39	2	y	0.86	38	6	38	6	y	0.94	83	5	83	5	y	0.96	64	3	64	3	y	0.96	95	4	95	4	y	0.86	36	6	36	6	y	0.91	58	6	58	6	y	0.96	50	2	50	2	y	1.00	50	0	50	0	n	0.93	85	6	85	6	y	0.96	55	2	55	2	y	0.89	65	8	65	8	y	ENSMUSG00000062234.15	Gak	chr5	protein_coding	cyclin G associated kinase
known_NIR_13946	chr5	108777909	108786103	+	108777766	108786103	A5SS	ENSMUST00000146207.6	known	0.83	10	2	10	2	y	1.00	5	0	5	0	n	0.73	11	4	11	4	y	0.78	7	2	7	2	n	0.44	8	10	8	10	y	0.88	15	2	15	2	y	0.41	7	10	7	10	y	0.82	9	2	9	2	y	0.50	3	3	3	3	n	0.64	9	5	9	5	y	0.45	5	6	5	6	y	0.72	13	5	13	5	y	ENSMUSG00000013495.16	Tmem175	chr5	protein_coding	transmembrane protein 175
known_NIR_13947	chr5	108777909	108786103	+	108777909	108786139	A3SS	ENSMUST00000078323.13	known	1.00	10	0	10	0	n	0.83	5	1	5	1	n	0.85	11	2	11	2	y	1.00	7	0	7	0	n	1.00	8	0	8	0	n	1.00	15	0	15	0	n	1.00	7	0	7	0	n	0.90	9	1	9	1	n	0.50	3	3	3	3	n	0.69	9	4	9	4	y	1.00	5	0	5	0	n	1.00	13	0	13	0	n	ENSMUSG00000013495.16	Tmem175	chr5	protein_coding	transmembrane protein 175
known_NIR_13948	chr5	108798834;108799864	108799758;108800260	-	108798834	108800260	cassetteExon	ENSMUST00000053913.13	known	0.01	0.5	34	1;0	34	n	0.02	0.5	21	1;0	21	n	0.02	0.5	23	1;0	23	n	0.09	2.5	24	3;2	24	y	0.06	1.5	24	1;2	24	n	0.00	0.0	8	0;0	8	n	0.07	2.0	26	2;2	26	y	0.12	1.0	7	1;1	7	n	0.05	1.0	20	1;1	20	n	0.02	1.0	40	0;2	40	n	0.04	0.5	13	0;1	13	n	0.10	2.5	23	5;0	23	n	ENSMUSG00000004815.13	Dgkq	chr5	protein_coding	diacylglycerol kinase, theta
known_NIR_13949	chr5	108801085	108801638	-	108801085	108801502	A5SS	ENSMUST00000053913.13	known	0.03	1	30	1	30	n	0.18	3	14	3	14	y	0.00	0	11	0	11	n	0.00	0	18	0	18	n	0.03	1	37	1	37	n	0.00	0	12	0	12	n	0.00	0	18	0	18	n	0.00	0	15	0	15	n	0.07	1	13	1	13	n	0.12	3	21	3	21	y	0.00	0	7	0	7	n	0.00	0	20	0	20	n	ENSMUSG00000004815.13	Dgkq	chr5	protein_coding	diacylglycerol kinase, theta
known_NIR_13950	chr5	108803951	108804290	-	108803997	108804290	A3SS	ENSMUST00000053913.13	known	0.31	4	9	4	9	y	0.20	1	4	1	4	n	0.50	6	6	6	6	y	0.21	3	11	3	11	y	0.38	8	13	8	13	y	0.67	4	2	4	2	n	0.29	4	10	4	10	y	0.40	4	6	4	6	y	0.43	6	8	6	8	y	0.17	4	20	4	20	y	0.14	1	6	1	6	n	0.27	6	16	6	16	y	ENSMUSG00000004815.13	Dgkq	chr5	protein_coding	diacylglycerol kinase, theta
known_NIR_13951	chr5	108818125	108827570	+	108818125;108827450	108827365;108827570	ES	ENSMUST00000071650.13	known	0.12	1	7.5	1	7;8	n	0.10	1	9.0	1	8;10	n	0.26	3	8.5	3	6;11	y	0.19	3	12.5	3	14;11	y	0.09	2	21.0	2	25;17	y	0.25	4	12.0	4	10;14	y	0.24	3	9.5	3	10;9	y	0.05	1	17.5	1	14;21	n	0.00	0	7.0	0	6;8	n	0.00	0	5.0	0	6;4	n	0.00	0	11.0	0	10;12	n	0.43	3	4.0	3	4;4	y	ENSMUSG00000033540.19	Idua	chr5	protein_coding	iduronidase, alpha-L
known_NIR_13952	chr5	108821914	108822414	-	108821914	108823105	A5SS	ENSMUST00000051757.14	known	0.29	40	99	40	99	y	0.36	31	54	31	54	y	0.30	30	71	30	71	y	0.26	61	171	61	171	y	0.31	74	162	74	162	y	0.49	38	40	38	40	y	0.34	56	111	56	111	y	0.41	40	58	40	58	y	0.34	57	110	57	110	y	0.26	65	181	65	181	y	0.27	38	105	38	105	y	0.31	76	173	76	173	y	ENSMUSG00000046959.17	Slc26a1	chr5	protein_coding	solute carrier family 26 (sulfate transporter), member 1
known_NIR_13953	chr5	108821914	108822528	-	108821914	108822414	A5SS	ENSMUST00000119270.2	known	0.29	16	40	16	40	y	0.33	15	31	15	31	y	0.44	24	30	24	30	y	0.29	25	61	25	61	y	0.42	53	74	53	74	y	0.22	11	38	11	38	y	0.30	24	56	24	56	y	0.33	20	40	20	40	y	0.32	27	57	27	57	y	0.36	36	65	36	65	y	0.39	24	38	24	38	y	0.23	23	76	23	76	y	ENSMUSG00000046959.17	Slc26a1	chr5	protein_coding	solute carrier family 26 (sulfate transporter), member 1
known_NIR_13954	chr5	108821914	108822528	-	108821914	108823105	A5SS	ENSMUST00000051757.14	known	0.14	16	99	16	99	y	0.22	15	54	15	54	y	0.25	24	71	24	71	y	0.13	25	171	25	171	y	0.25	53	162	53	162	y	0.22	11	40	11	40	y	0.18	24	111	24	111	y	0.26	20	58	20	58	y	0.20	27	110	27	110	y	0.17	36	181	36	181	y	0.19	24	105	24	105	y	0.12	23	173	23	173	y	ENSMUSG00000046959.17	Slc26a1	chr5	protein_coding	solute carrier family 26 (sulfate transporter), member 1
known_NIR_13955	chr5	108842398	108842761	+	108842398	108842904	A3SS	ENSMUST00000197255.2	known	0.80	12	3	12	3	y	0.87	13	2	13	2	y	0.63	12	7	12	7	y	0.59	13	9	13	9	y	0.57	13	10	13	10	y	0.91	10	1	10	1	n	0.86	12	2	12	2	y	0.87	13	2	13	2	y	0.71	5	2	5	2	n	0.73	27	10	27	10	y	0.75	9	3	9	3	y	0.85	22	4	22	4	y	ENSMUSG00000008090.15	Fgfrl1	chr5	protein_coding	fibroblast growth factor receptor-like 1
known_NIR_13956	chr5	109705480	109706671	-	109705615	109706671	A3SS	ENSMUST00000200284.5	known	0.90	19	2	19	2	y	0.71	15	6	15	6	y	0.68	28	13	28	13	y	0.65	13	7	13	7	y	0.63	19	11	19	11	y	0.60	15	10	15	10	y	0.83	29	6	29	6	y	0.88	15	2	15	2	y	0.69	11	5	11	5	y	0.94	15	1	15	1	n	0.62	15	9	15	9	y	0.73	24	9	24	9	y	ENSMUSG00000033467.13	Crlf2	chr5	protein_coding	cytokine receptor-like factor 2
known_NIR_13957	chr5	110081881	110088292	+	110071632	110088292	A5SS	ENSMUST00000112544.8	known	0.57	4	3	4	3	n	0.50	1	1	1	1	n	0.17	1	5	1	5	n	0.33	2	4	2	4	n	0.45	5	6	5	6	y	0.60	6	4	6	4	y	0.33	1	2	1	2	n	0.00	0	7	0	7	n	0.43	3	4	3	4	n	0.56	5	4	5	4	n	0.00	0	5	0	5	n	0.33	3	6	3	6	n	ENSMUSG00000090015.9	Gm15446	chr5	protein_coding	predicted gene 15446
known_NIR_13958	chr5	110144499	110154810	+	110144499	110151219	3pMXE	ENSMUST00000142180.2	known	0.25	5	15	5	15	y	0.50	4	4	4	4	n	0.33	7	14	7	14	y	0.35	8	15	8	15	y	0.50	14	14	14	14	y	0.38	6	10	6	10	y	0.73	19	7	19	7	y	0.56	9	7	9	7	y	0.47	9	10	9	10	y	0.53	9	8	9	8	y	0.60	9	6	9	6	y	0.65	11	6	11	6	y	ENSMUSG00000066613.15	Zfp932	chr5	protein_coding	zinc finger protein 932
known_NIR_13959	chr5	110144499;110151318	110151219;110154810	+	110144499	110154810	cassetteExon	ENSMUST00000112540.8	known	0.69	11.0	5	15;7	5	y	0.62	6.5	4	4;9	4	y	0.52	7.5	7	14;1	7	n	0.57	10.5	8	15;6	8	y	0.43	10.5	14	14;7	14	y	0.59	8.5	6	10;7	6	y	0.32	9.0	19	7;11	19	y	0.36	5.0	9	7;3	9	y	0.54	10.5	9	10;11	9	y	0.49	8.5	9	8;9	9	y	0.40	6.0	9	6;6	9	y	0.37	6.5	11	6;7	11	y	ENSMUSG00000066613.15	Zfp932	chr5	protein_coding	zinc finger protein 932
known_NIR_13960	chr5	110254608	110254926	-	110254806	110254926	A3SS&ES	ENSMUST00000077220.14	known	0.00	0	32	0	32	n	0.00	0	26	0	26	n	0.00	0	32	0	32	n	0.00	0	26	0	26	n	0.10	4	36	4	36	y	0.00	0	16	0	16	n	0.00	0	31	0	31	n	0.00	0	7	0	7	n	0.00	0	22	0	22	n	0.00	0	35	0	35	n	0.06	2	29	2	29	y	0.00	0	30	0	30	n	ENSMUSG00000033434.16	Gtpbp6	chr5	protein_coding	GTP binding protein 6 (putative)
known_NIR_13961	chr5	110255063	110255378	-	110255063	110255722	A5SS	ENSMUST00000077220.14	known	0.00	0	31	0	31	n	0.05	1	19	1	19	n	0.04	1	23	1	23	n	0.00	0	30	0	30	n	0.00	0	35	0	35	n	0.00	0	25	0	25	n	0.00	0	40	0	40	n	0.12	1	7	1	7	n	0.03	1	30	1	30	n	0.03	1	39	1	39	n	0.03	1	28	1	28	n	0.10	3	28	3	28	y	ENSMUSG00000033434.16	Gtpbp6	chr5	protein_coding	GTP binding protein 6 (putative)
known_NIR_13962	chr5	110284060	110288220	+	110284060;110288055	110287983;110288220	ES	ENSMUST00000199672.5	known	0.84	16	3.0	16	2;4	y	0.97	15	0.5	15	1;0	n	0.65	17	9.0	17	7;11	y	0.67	10	5.0	10	6;4	y	0.59	17	12.0	17	14;10	y	0.65	11	6.0	11	7;5	y	0.73	16	6.0	16	6;6	y	0.38	4	6.5	4	9;4	y	0.73	16	6.0	16	5;7	y	0.81	22	5.0	22	5;5	y	0.50	5	5.0	5	7;3	y	0.69	19	8.5	19	12;5	y	ENSMUSG00000014668.16	Chfr	chr5	protein_coding	checkpoint with forkhead and ring finger domains
known_NIR_13963	chr5	110284060	110288242	+	110284060	110287983	A3SS&ES	ENSMUST00000199672.5	known	0.60	3	2	3	2	n	0.80	4	1	4	1	n	0.46	6	7	6	7	y	0.14	1	6	1	6	n	0.00	0	14	0	14	n	0.22	2	7	2	7	n	0.60	9	6	9	6	y	0.00	0	9	0	9	n	0.44	4	5	4	5	n	0.67	10	5	10	5	y	0.22	2	7	2	7	n	0.25	4	12	4	12	y	ENSMUSG00000014668.16	Chfr	chr5	protein_coding	checkpoint with forkhead and ring finger domains
known_NIR_13964	chr5	110284060	110288242	+	110284060	110288220	A3SS	ENSMUST00000112519.9	known	0.16	3	16	3	16	y	0.21	4	15	4	15	y	0.26	6	17	6	17	y	0.09	1	10	1	10	n	0.00	0	17	0	17	n	0.15	2	11	2	11	y	0.36	9	16	9	16	y	0.00	0	4	0	4	n	0.20	4	16	4	16	y	0.31	10	22	10	22	y	0.29	2	5	2	5	n	0.17	4	19	4	19	y	ENSMUSG00000014668.16	Chfr	chr5	protein_coding	checkpoint with forkhead and ring finger domains
known_NIR_13965	chr5	110292516	110294336	+	110292516;110292853	110292638;110294336	ES	ENSMUST00000199672.5	known	0.04	1	24.5	1	31;18	n	0.22	6	21.0	6	18;24	y	0.00	0	28.5	0	26;31	n	0.06	2	31.5	2	32;31	y	0.12	5	37.5	5	40;35	y	0.00	0	26.5	0	24;29	n	0.03	1	35.5	1	38;33	n	0.07	2	26.0	2	27;25	y	0.14	4	25.5	4	28;23	y	0.00	0	39.0	0	42;36	n	0.00	0	25.0	0	26;24	n	0.06	2	33.0	2	36;30	y	ENSMUSG00000014668.16	Chfr	chr5	protein_coding	checkpoint with forkhead and ring finger domains
known_NIR_13966	chr5	110302848	110306665	+	110302848	110306668	A3SS	ENSMUST00000199672.5	known	0.59	22	15	22	15	y	0.58	25	18	25	18	y	0.82	50	11	50	11	y	0.57	16	12	16	12	y	0.76	44	14	44	14	y	0.73	16	6	16	6	y	0.60	27	18	27	18	y	0.74	17	6	17	6	y	0.72	26	10	26	10	y	0.69	31	14	31	14	y	0.58	19	14	19	14	y	0.60	21	14	21	14	y	ENSMUSG00000014668.16	Chfr	chr5	protein_coding	checkpoint with forkhead and ring finger domains
known_NIR_13967	chr5	110310647	110311872	+	110310647	110311595	3pMXE	ENSMUST00000199672.5	known	0.97	33	1	33	1	n	1.00	31	0	31	0	n	0.95	55	3	55	3	y	1.00	51	0	51	0	n	1.00	47	0	47	0	n	1.00	20	0	20	0	n	1.00	42	0	42	0	n	1.00	27	0	27	0	n	0.93	28	2	28	2	y	1.00	51	0	51	0	n	1.00	39	0	39	0	n	1.00	38	0	38	0	n	ENSMUSG00000014668.16	Chfr	chr5	protein_coding	checkpoint with forkhead and ring finger domains
known_NIR_13968	chr5	110324915	110329469	+	110324788	110329469	A5SS	ENSMUST00000112512.8	known	0.33	5	10	5	10	y	0.40	4	6	4	6	y	0.43	15	20	15	20	y	0.43	10	13	10	13	y	0.40	10	15	10	15	y	0.56	9	7	9	7	y	0.35	6	11	6	11	y	0.33	5	10	5	10	y	0.38	6	10	6	10	y	0.23	6	20	6	20	y	0.57	4	3	4	3	n	0.08	1	12	1	12	n	ENSMUSG00000029502.15	Golga3	chr5	protein_coding	golgi autoantigen, golgin subfamily a, 3
known_NIR_13969	chr5	110332473	110333652	+	110332353	110333652	A5SS	ENSMUST00000112512.8	known	0.75	9	3	9	3	y	0.50	6	6	6	6	y	0.38	12	20	12	20	y	0.35	7	13	7	13	y	0.40	14	21	14	21	y	0.67	14	7	14	7	y	0.30	9	21	9	21	y	0.60	9	6	9	6	y	0.12	2	15	2	15	y	0.38	6	10	6	10	y	0.46	6	7	6	7	y	0.54	7	6	7	6	y	ENSMUSG00000029502.15	Golga3	chr5	protein_coding	golgi autoantigen, golgin subfamily a, 3
known_NIR_13970	chr5	110384345	110385524	+	110384345	110385521	A3SS	ENSMUST00000197188.5	known	0.14	3	18	3	18	y	0.28	5	13	5	13	y	0.22	11	39	11	39	y	0.03	1	33	1	33	n	0.18	7	31	7	31	y	0.09	2	20	2	20	y	0.12	4	30	4	30	y	0.06	1	15	1	15	n	0.17	4	20	4	20	y	0.11	3	24	3	24	y	0.22	4	14	4	14	y	0.20	6	24	6	24	y	ENSMUSG00000029501.15	Ankle2	chr5	protein_coding	ankyrin repeat and LEM domain containing 2
known_NIR_13971	chr5	110398673	110399442	+	110398673	110399363	A3SS	ENSMUST00000197188.5	known	0.06	2	32	2	32	y	0.00	0	27	0	27	n	0.00	0	42	0	42	n	0.06	3	50	3	50	y	0.02	1	54	1	54	n	0.00	0	33	0	33	n	0.02	1	41	1	41	n	0.00	0	31	0	31	n	0.10	3	27	3	27	y	0.00	0	29	0	29	n	0.00	0	30	0	30	n	0.00	0	38	0	38	n	ENSMUSG00000029501.15	Ankle2	chr5	protein_coding	ankyrin repeat and LEM domain containing 2
known_NIR_13972	chr5	110413508	110413606	-	110413511	110413606	A3SS	ENSMUST00000112505.9	known	0.62	23	14	23	14	y	0.47	14	16	14	16	y	0.54	34	29	34	29	y	0.51	20	19	20	19	y	0.47	30	34	30	34	y	0.60	15	10	15	10	y	0.56	43	34	43	34	y	0.59	17	12	17	12	y	0.50	21	21	21	21	y	0.30	19	44	19	44	y	0.55	33	27	33	27	y	0.45	28	34	28	34	y	ENSMUSG00000029500.17	Pgam5	chr5	protein_coding	phosphoglycerate mutase family member 5
known_NIR_13973	chr5	110425640	110431512	-	110425640;110429225	110429063;110431512	ES	ENSMUST00000031472.12	known	0.00	0	597.5	0	679;516	n	0.00	0	594.5	0	653;536	n	0.00	0	239.5	0	279;200	n	0.00	2	660.0	2	729;591	y	0.00	2	641.5	2	721;562	y	0.00	0	195.5	0	210;181	n	0.00	0	732.0	0	834;630	n	0.00	0	291.5	0	335;248	n	0.01	4	586.5	4	668;505	y	0.01	4	769.0	4	883;655	y	0.00	1	618.0	1	681;555	n	0.00	1	819.5	1	937;702	n	ENSMUSG00000029499.12	Pxmp2	chr5	protein_coding	peroxisomal membrane protein 2
known_NIR_13974	chr5	110428702	110429063	-	110425640	110429063	A3SS	ENSMUST00000031472.12	known	0.00	0	679	0	679	n	0.00	0	653	0	653	n	0.00	0	279	0	279	n	0.00	0	729	0	729	n	0.00	0	721	0	721	n	0.00	1	210	1	210	n	0.00	0	834	0	834	n	0.00	0	335	0	335	n	0.00	0	668	0	668	n	0.00	2	883	2	883	y	0.00	3	681	3	681	y	0.00	0	937	0	937	n	ENSMUSG00000029499.12	Pxmp2	chr5	protein_coding	peroxisomal membrane protein 2
known_NIR_13975	chr5	110522385	110524119	-	110522385;110523944	110523873;110524119	ES	ENSMUST00000069483.12	known	0.06	1	15.0	1	15;15	n	0.09	1	10.0	1	7;13	n	0.00	0	23.5	0	20;27	n	0.11	2	17.0	2	15;19	y	0.00	0	32.5	0	34;31	n	0.08	1	11.0	1	10;12	n	0.00	0	28.0	0	24;32	n	0.00	0	12.0	0	11;13	n	0.09	2	20.0	2	15;25	y	0.00	0	21.5	0	17;26	n	0.00	0	16.0	0	14;18	n	0.06	1	17.0	1	11;23	n	ENSMUSG00000043323.18	Fbrsl1	chr5	protein_coding	fibrosin-like 1
known_NIR_13976	chr5	110526121	110526760	-	110526121;110526363	110526295;110526760	ES	ENSMUST00000069483.12	known	0.75	9	3.0	9	0;6	n	0.71	6	2.5	6	2;3	y	0.56	9	7.0	9	2;12	y	0.76	11	3.5	11	1;6	n	0.64	15	8.5	15	2;15	y	0.27	2	5.5	2	3;8	y	0.67	12	6.0	12	0;12	n	0.67	12	6.0	12	0;12	n	0.53	5	4.5	5	1;8	n	0.65	17	9.0	17	2;16	y	0.52	6	5.5	6	2;9	y	0.54	7	6.0	7	1;11	n	ENSMUSG00000043323.18	Fbrsl1	chr5	protein_coding	fibrosin-like 1
known_NIR_13977	chr5	110526121	110526760	-	110526363	110526760	A3SS	ENSMUST00000196801.5	known	0.60	9	6	9	6	y	0.67	6	3	6	3	n	0.43	9	12	9	12	y	0.65	11	6	11	6	y	0.50	15	15	15	15	y	0.20	2	8	2	8	y	0.50	12	12	12	12	y	0.50	12	12	12	12	y	0.38	5	8	5	8	y	0.52	17	16	17	16	y	0.40	6	9	6	9	y	0.39	7	11	7	11	y	ENSMUSG00000043323.18	Fbrsl1	chr5	protein_coding	fibrosin-like 1
known_NIR_13978	chr5	110580011	110580767	-	110565813	110580767	A3SS	ENSMUST00000069483.12	known	0.32	9	19	9	19	y	0.17	4	20	4	20	y	0.34	12	23	12	23	y	0.32	10	21	10	21	y	0.26	11	31	11	31	y	0.12	2	14	2	14	y	0.30	13	31	13	31	y	0.58	7	5	7	5	y	0.34	11	21	11	21	y	0.28	9	23	9	23	y	0.48	11	12	11	12	y	0.17	5	25	5	25	y	ENSMUSG00000043323.18	Fbrsl1	chr5	protein_coding	fibrosin-like 1
known_NIR_13979	chr5	110816590	110818741	-	110816611	110818741	A3SS	ENSMUST00000041558.15	known	0.00	0	23	0	23	n	0.15	5	29	5	29	y	0.09	4	41	4	41	y	0.17	7	33	7	33	y	0.04	2	45	2	45	y	0.09	2	21	2	21	y	0.14	5	32	5	32	y	0.08	2	22	2	22	y	0.04	1	25	1	25	n	0.21	7	27	7	27	y	0.32	9	19	9	19	y	0.14	6	38	6	38	y	ENSMUSG00000029505.18	Ep400	chr5	protein_coding	E1A binding protein p400
known_NIR_13980	chr5	110846782;110848630	110848388;110849487	-	110846782	110849487	cassetteExon	ENSMUST00000041558.15	known	1.00	6.5	0	4;9	0	n	1.00	5.0	0	5;5	0	n	1.00	17.5	0	15;20	0	n	0.66	9.5	5	8;11	5	y	0.64	14.0	8	13;15	8	y	0.88	7.0	1	5;9	1	n	0.67	6.0	3	2;10	3	y	0.91	10.0	1	2;18	1	n	0.27	1.5	4	1;2	4	n	0.73	13.5	5	4;23	5	y	0.78	3.5	1	1;6	1	n	0.31	4.0	9	2;6	9	y	ENSMUSG00000029505.18	Ep400	chr5	protein_coding	E1A binding protein p400
known_NIR_13981	chr5	110887547	110889836	-	110887547;110888155	110888048;110889836	ES	ENSMUST00000041558.15	known	0.20	1	4.0	1	6;2	n	0.40	1	1.5	1	1;2	n	0.25	2	6.0	2	8;4	y	0.35	3	5.5	3	3;8	y	0.80	8	2.0	8	3;1	n	0.40	5	7.5	5	5;10	y	0.77	10	3.0	10	2;4	y	1.00	5	0.0	5	0;0	n	0.29	1	2.5	1	3;2	n	0.35	3	5.5	3	5;6	y	0.33	1	2.0	1	1;3	n	0.52	7	6.5	7	5;8	y	ENSMUSG00000029505.18	Ep400	chr5	protein_coding	E1A binding protein p400
known_NIR_13982	chr5	110923504;110924473	110924420;110925480	-	110923504	110925480	cassetteExon	ENSMUST00000031483.15	known	0.08	3.5	38	4;3	38	y	0.00	0.0	35	0;0	35	n	0.04	3.0	65	4;2	65	y	0.03	1.0	39	0;2	39	n	0.06	3.5	52	4;3	52	y	0.00	0.0	28	0;0	28	n	0.05	3.0	57	2;4	57	y	0.08	2.5	28	2;3	28	y	0.05	2.0	41	2;2	41	y	0.04	2.5	61	3;2	61	y	0.04	2.5	55	2;3	55	y	0.08	4.5	53	6;3	53	y	ENSMUSG00000029507.17	Pus1	chr5	protein_coding	pseudouridine synthase 1
known_NIR_13983	chr5	110923504;110925617	110925480;110927553	-	110923504	110927553	cassetteExon	ENSMUST00000112426.8	known	0.92	36.5	3	38;35	3	y	1.00	39.5	0	35;44	0	n	0.98	56.0	1	65;47	1	n	0.91	42.0	4	39;45	4	y	1.00	47.5	0	52;43	0	n	1.00	23.0	0	28;18	0	n	0.92	57.5	5	57;58	5	y	0.90	28.0	3	28;28	3	y	0.88	36.0	5	41;31	5	y	0.96	66.0	3	61;71	3	y	1.00	46.0	0	55;37	0	n	0.95	58.5	3	53;64	3	y	ENSMUSG00000029507.17	Pus1	chr5	protein_coding	pseudouridine synthase 1
known_NIR_13984	chr5	110927763	110928420	-	110927763	110928106	A5SS	ENSMUST00000031483.15	known	0.17	2	10	2	10	y	0.06	1	16	1	16	n	0.07	1	13	1	13	n	0.00	0	21	0	21	n	0.06	1	16	1	16	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.04	1	24	1	24	n	0.08	1	12	1	12	n	0.06	1	15	1	15	n	ENSMUSG00000029507.17	Pus1	chr5	protein_coding	pseudouridine synthase 1
known_NIR_13985	chr5	110927763	110928428	-	110927763	110928106	A5SS	ENSMUST00000031483.15	known	0.38	6	10	6	10	y	0.24	5	16	5	16	y	0.50	13	13	13	13	y	0.30	9	21	9	21	y	0.53	18	16	18	16	y	0.54	7	6	7	6	y	0.33	8	16	8	16	y	0.22	2	7	2	7	n	0.33	5	10	5	10	y	0.37	14	24	14	24	y	0.40	8	12	8	12	y	0.29	6	15	6	15	y	ENSMUSG00000029507.17	Pus1	chr5	protein_coding	pseudouridine synthase 1
known_NIR_13986	chr5	110935527	110935639	-	110935558	110935639	A3SS	ENSMUST00000031490.11	known	0.00	0	74	0	74	n	0.00	0	71	0	71	n	0.00	0	192	0	192	n	0.01	2	143	2	143	y	0.00	0	179	0	179	n	0.00	0	63	0	63	n	0.00	0	143	0	143	n	0.00	0	56	0	56	n	0.00	0	73	0	73	n	0.00	0	141	0	141	n	0.00	0	74	0	74	n	0.00	0	113	0	113	n	ENSMUSG00000029512.12	Ulk1	chr5	protein_coding	unc-51 like kinase 1
known_NIR_13987	chr5	110938820	110938918	-	110938802	110938918	A3SS	ENSMUST00000031490.11	known	0.30	21	49	21	49	y	0.25	15	46	15	46	y	0.32	46	100	46	100	y	0.31	28	63	28	63	y	0.23	27	88	27	88	y	0.16	9	46	9	46	y	0.27	24	66	24	66	y	0.15	7	40	7	40	y	0.37	21	36	21	36	y	0.31	39	86	39	86	y	0.22	15	54	15	54	y	0.33	30	60	30	60	y	ENSMUSG00000029512.12	Ulk1	chr5	protein_coding	unc-51 like kinase 1
known_NIR_13988	chr5	110940979;110941357	110941241;110941681	-	110940979	110941681	cassetteExon	ENSMUST00000031490.11	known	0.06	2.5	40	4;1	40	n	0.03	1.0	39	2;0	39	n	0.02	2.5	132	5;0	132	n	0.03	3.5	112	7;0	112	n	0.02	2.0	112	4;0	112	n	0.07	3.0	39	4;2	39	y	0.04	3.5	95	6;1	95	n	0.09	4.0	43	8;0	43	n	0.03	1.5	57	3;0	57	n	0.01	1.0	90	2;0	90	n	0.04	2.0	46	2;2	46	y	0.02	2.0	83	4;0	83	n	ENSMUSG00000029512.12	Ulk1	chr5	protein_coding	unc-51 like kinase 1
known_NIR_13989	chr5	110982665	110983841	-	110982665	110983846	A5SS	ENSMUST00000056937.12	known	0.00	0	14	0	14	n	0.16	3	16	3	16	y	0.00	0	8	0	8	n	0.05	1	18	1	18	n	0.15	3	17	3	17	y	0.00	0	9	0	9	n	0.08	2	23	2	23	y	0.43	3	4	3	4	n	0.16	3	16	3	16	y	0.00	0	16	0	16	n	0.05	1	18	1	18	n	0.29	5	12	5	12	y	ENSMUSG00000043510.13	Hscb	chr5	protein_coding	HscB iron-sulfur cluster co-chaperone
known_NIR_13990	chr5	111495721	111519178	+	111495721;111497440	111497357;111519178	ES	ENSMUST00000086635.9	known	0.00	0	107.0	0	96;118	n	0.00	0	64.5	0	67;62	n	0.00	0	134.5	0	137;132	n	0.01	1	112.5	1	118;107	n	0.00	0	167.0	0	162;172	n	0.00	0	66.0	0	74;58	n	0.00	0	124.0	0	124;124	n	0.00	0	98.0	0	97;99	n	0.00	0	96.5	0	88;105	n	0.00	0	133.0	0	136;130	n	0.02	2	104.5	2	104;105	y	0.00	0	156.0	0	150;162	n	ENSMUSG00000050017.12	Pitpnb	chr5	protein_coding	phosphatidylinositol transfer protein, beta
known_NIR_13991	chr5	111530976	111534369	+	111530976;111533470	111533386;111534369	ES	ENSMUST00000086635.9	known	0.70	96	41.5	96	48;35	y	0.75	60	20.5	60	21;20	y	0.64	89	50.0	89	43;57	y	0.71	87	36.0	87	38;34	y	0.70	118	51.0	118	52;50	y	0.60	47	31.5	47	44;19	y	0.70	111	48.5	111	52;45	y	0.76	73	23.5	73	23;24	y	0.77	92	28.0	92	26;30	y	0.70	103	45.0	103	44;46	y	0.77	88	26.0	88	23;29	y	0.86	149	24.5	149	25;24	y	ENSMUSG00000050017.12	Pitpnb	chr5	protein_coding	phosphatidylinositol transfer protein, beta
known_NIR_13992	chr5	112424637	112455432	+	112424637;112451837	112451766;112455432	ES	ENSMUST00000031287.12	known	0.04	2	48.5	2	25;72	y	0.00	0	50.5	0	29;72	n	0.00	0	68.0	0	40;96	n	0.00	0	55.5	0	34;77	n	0.01	1	91.5	1	55;128	n	0.03	1	38.5	1	22;55	n	0.01	1	89.0	1	57;121	n	0.00	0	49.0	0	28;70	n	0.00	0	37.5	0	20;55	n	0.00	0	69.0	0	34;104	n	0.00	0	55.0	0	38;72	n	0.00	0	58.0	0	39;77	n	ENSMUSG00000029344.16	Tpst2	chr5	protein_coding	protein-tyrosine sulfotransferase 2
known_NIR_13993	chr5	112424637;112451837	112451766;112457555	+	112424637;112456343	112455432;112457555	MXE	ENSMUST00000071455.7	known	0.17	14.0	69.0	25;3	2;136	y	0.22	17.0	60.0	29;5	0;120	n	0.23	20.0	65.5	40;0	0;131	n	0.28	17.0	43.5	34;0	0;87	n	0.25	28.5	86.0	55;2	1;171	n	0.26	12.0	35.0	22;2	1;69	n	0.36	32.0	56.5	57;7	1;112	n	0.25	14.0	42.0	28;0	0;84	n	0.18	10.5	48.5	20;1	0;97	n	0.18	17.0	77.0	34;0	0;154	n	0.25	19.0	56.5	38;0	0;113	n	0.30	20.0	47.5	39;1	0;95	n	ENSMUSG00000029344.16	Tpst2	chr5	protein_coding	protein-tyrosine sulfotransferase 2
known_NIR_13994	chr5	112436678	112451766	+	112424637	112451766	A5SS	ENSMUST00000031287.12	known	0.00	0	25	0	25	n	0.00	0	29	0	29	n	0.07	3	40	3	40	y	0.03	1	34	1	34	n	0.00	0	55	0	55	n	0.00	0	22	0	22	n	0.02	1	57	1	57	n	0.00	0	28	0	28	n	0.09	2	20	2	20	y	0.00	0	34	0	34	n	0.05	2	38	2	38	y	0.00	0	39	0	39	n	ENSMUSG00000029344.16	Tpst2	chr5	protein_coding	protein-tyrosine sulfotransferase 2
known_NIR_13995	chr5	112451837	112457555	+	112451837	112455432	3pMXE	ENSMUST00000134071.8	known	0.04	3	72	3	72	y	0.06	5	72	5	72	y	0.00	0	96	0	96	n	0.00	0	77	0	77	n	0.02	2	128	2	128	y	0.04	2	55	2	55	y	0.05	7	121	7	121	y	0.00	0	70	0	70	n	0.02	1	55	1	55	n	0.00	0	104	0	104	n	0.00	0	72	0	72	n	0.01	1	77	1	77	n	ENSMUSG00000029344.16	Tpst2	chr5	protein_coding	protein-tyrosine sulfotransferase 2
known_NIR_13996	chr5	112451837	112457555	+	112451837;112456343	112455432;112457555	ES	ENSMUST00000031287.12	known	0.03	3	104.0	3	72;136	y	0.05	5	96.0	5	72;120	y	0.00	0	113.5	0	96;131	n	0.00	0	82.0	0	77;87	n	0.01	2	149.5	2	128;171	y	0.03	2	62.0	2	55;69	y	0.06	7	116.5	7	121;112	y	0.00	0	77.0	0	70;84	n	0.01	1	76.0	1	55;97	n	0.00	0	129.0	0	104;154	n	0.00	0	92.5	0	72;113	n	0.01	1	86.0	1	77;95	n	ENSMUSG00000029344.16	Tpst2	chr5	protein_coding	protein-tyrosine sulfotransferase 2
known_NIR_13997	chr5	112456343	112457555	+	112451837	112457555	A5SS	ENSMUST00000198502.2	known	0.98	136	3	136	3	y	0.96	120	5	120	5	y	1.00	131	0	131	0	n	1.00	87	0	87	0	n	0.99	171	2	171	2	y	0.97	69	2	69	2	y	0.94	112	7	112	7	y	1.00	84	0	84	0	n	0.99	97	1	97	1	n	1.00	154	0	154	0	n	1.00	113	0	113	0	n	0.99	95	1	95	1	n	ENSMUSG00000029344.16	Tpst2	chr5	protein_coding	protein-tyrosine sulfotransferase 2
known_NIR_13998	chr5	112456420	112457555	+	112451837	112457555	A5SS	ENSMUST00000198502.2	known	0.70	7	3	7	3	y	0.55	6	5	6	5	y	1.00	3	0	3	0	n	1.00	7	0	7	0	n	0.71	5	2	5	2	n	0.33	1	2	1	2	n	0.12	1	7	1	7	n	1.00	2	0	2	0	n	0.83	5	1	5	1	n	1.00	1	0	1	0	n	1.00	6	0	6	0	n	0.67	2	1	2	1	n	ENSMUSG00000029344.16	Tpst2	chr5	protein_coding	protein-tyrosine sulfotransferase 2
known_NIR_13999	chr5	112456420	112457555	+	112456343	112457555	A5SS	ENSMUST00000031287.12	known	0.05	7	136	7	136	y	0.05	6	120	6	120	y	0.02	3	131	3	131	y	0.07	7	87	7	87	y	0.03	5	171	5	171	y	0.01	1	69	1	69	n	0.01	1	112	1	112	n	0.02	2	84	2	84	y	0.05	5	97	5	97	y	0.01	1	154	1	154	n	0.05	6	113	6	113	y	0.02	2	95	2	95	y	ENSMUSG00000029344.16	Tpst2	chr5	protein_coding	protein-tyrosine sulfotransferase 2
known_NIR_14000	chr5	112485607	112485842	-	112485607	112485868	A5SS	ENSMUST00000155756.8	known	0.37	11	19	11	19	y	0.20	10	41	10	41	y	0.17	6	29	6	29	y	0.03	1	30	1	30	n	0.06	2	29	2	29	y	0.23	5	17	5	17	y	0.12	4	30	4	30	y	0.12	2	15	2	15	y	0.22	6	21	6	21	y	0.20	11	44	11	44	y	0.13	7	45	7	45	y	0.19	7	29	7	29	y	ENSMUSG00000029346.13	Srrd	chr5	protein_coding	SRR1 domain containing
known_NIR_14001	chr5	112486338	112487585	-	112486433	112487585	A3SS	ENSMUST00000155756.8	known	0.77	27	8	27	8	y	0.60	21	14	21	14	y	0.71	37	15	37	15	y	0.79	33	9	33	9	y	0.69	29	13	29	13	y	0.78	21	6	21	6	y	0.77	33	10	33	10	y	0.84	16	3	16	3	y	0.62	26	16	26	16	y	0.58	26	19	26	19	y	0.81	35	8	35	8	y	0.71	24	10	24	10	y	ENSMUSG00000029346.13	Srrd	chr5	protein_coding	SRR1 domain containing
known_NIR_14002	chr5	112490988	112491910	+	112491029	112491910	A5SS	ENSMUST00000112359.9	known	0.20	1	4	1	4	n	0.25	1	3	1	3	n	0.80	4	1	4	1	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.30	3	7	3	7	y	ENSMUSG00000042328.14	Hps4	chr5	protein_coding	HPS4, biogenesis of lysosomal organelles complex 3 subunit 2
known_NIR_14003	chr5	112491029	112492407	+	112491029	112491910	A3SS	ENSMUST00000112359.9	known	0.20	1	4	1	4	n	0.25	1	3	1	3	n	0.67	2	1	2	1	n	0.50	5	5	5	5	y	0.50	2	2	2	2	n	0.33	1	2	1	2	n	0.50	6	6	6	6	y	0.50	2	2	2	2	n	0.60	3	2	3	2	n	0.17	1	5	1	5	n	0.50	4	4	4	4	n	0.50	7	7	7	7	y	ENSMUSG00000042328.14	Hps4	chr5	protein_coding	HPS4, biogenesis of lysosomal organelles complex 3 subunit 2
known_NIR_14004	chr5	113228446	113228898	-	113228530	113228898	A3SS	ENSMUST00000118226.8	known	1.00	6	0	6	0	n	0.88	7	1	7	1	n	0.71	108	44	108	44	y	0.83	5	1	5	1	n	0.83	25	5	25	5	y	0.75	72	24	72	24	y	0.76	16	5	16	5	y	0.74	17	6	17	6	y	0.75	3	1	3	1	n	1.00	3	0	3	0	n	1.00	4	0	4	0	n	1.00	1	0	1	0	n	ENSMUSG00000029352.15	Crybb3	chr5	protein_coding	crystallin, beta B3
known_NIR_14005	chr5	113228446	113229422	-	113228446	113228898	5pMXE	ENSMUST00000120506.8	known	0.00	0	6	0	6	n	0.12	1	7	1	7	n	0.11	13	108	13	108	y	0.00	0	5	0	5	n	0.04	1	25	1	25	n	0.03	2	72	2	72	y	0.00	0	16	0	16	n	0.15	3	17	3	17	y	0.50	3	3	3	3	n	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	ENSMUSG00000029352.15	Crybb3	chr5	protein_coding	crystallin, beta B3
known_NIR_14006	chr5	113228446	113229422	-	113228516	113229422	A3SS	ENSMUST00000119627.8	known	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.21	13	50	13	50	y	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.06	2	30	2	30	y	0.00	0	5	0	5	n	0.30	3	7	3	7	y	0.50	3	3	3	3	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000029352.15	Crybb3	chr5	protein_coding	crystallin, beta B3
known_NIR_14007	chr5	113228516	113228898	-	113228446	113228898	A3SS	ENSMUST00000120506.8	known	0.14	1	6	1	6	n	0.59	10	7	10	7	y	0.50	108	108	108	108	y	0.44	4	5	4	5	n	0.32	12	25	12	25	y	0.44	57	72	57	72	y	0.43	12	16	12	16	y	0.55	21	17	21	17	y	0.40	2	3	2	3	n	0.00	0	3	0	3	n	0.33	2	4	2	4	n	0.50	1	1	1	1	n	ENSMUSG00000029352.15	Crybb3	chr5	protein_coding	crystallin, beta B3
known_NIR_14008	chr5	113228516	113228898	-	113228516	113229422	A5SS	ENSMUST00000119627.8	known	0.20	1	4	1	4	n	0.77	10	3	10	3	y	0.68	108	50	108	50	y	0.57	4	3	4	3	n	0.75	12	4	12	4	y	0.66	57	30	57	30	y	0.71	12	5	12	5	y	0.75	21	7	21	7	y	0.40	2	3	2	3	n	0.00	0	1	0	1	n	1.00	2	0	2	0	n	0.50	1	1	1	1	n	ENSMUSG00000029352.15	Crybb3	chr5	protein_coding	crystallin, beta B3
known_NIR_14009	chr5	113228516	113228898	-	113228530	113228898	A3SS	ENSMUST00000118226.8	known	1.00	1	0	1	0	n	0.91	10	1	10	1	n	0.71	108	44	108	44	y	0.80	4	1	4	1	n	0.71	12	5	12	5	y	0.70	57	24	57	24	y	0.71	12	5	12	5	y	0.78	21	6	21	6	y	0.67	2	1	2	1	n	-	-	-	-	-	-	1.00	2	0	2	0	n	1.00	1	0	1	0	n	ENSMUSG00000029352.15	Crybb3	chr5	protein_coding	crystallin, beta B3
known_NIR_14010	chr5	113228530	113229422	-	113228446	113229422	A3SS	ENSMUST00000117143.8	known	1.00	1	0	1	0	n	0.80	4	1	4	1	n	0.67	26	13	26	13	y	1.00	2	0	2	0	n	0.00	0	1	0	1	n	0.89	16	2	16	2	y	1.00	6	0	6	0	n	0.50	3	3	3	3	n	0.00	0	3	0	3	n	0.67	2	1	2	1	n	-	-	-	-	-	-	1.00	5	0	5	0	n	ENSMUSG00000029352.15	Crybb3	chr5	protein_coding	crystallin, beta B3
known_NIR_14011	chr5	113228530	113229422	-	113228516	113229422	A3SS	ENSMUST00000119627.8	known	0.20	1	4	1	4	n	0.57	4	3	4	3	n	0.34	26	50	26	50	y	0.40	2	3	2	3	n	0.00	0	4	0	4	n	0.35	16	30	16	30	y	0.55	6	5	6	5	y	0.30	3	7	3	7	y	0.00	0	3	0	3	n	0.67	2	1	2	1	n	-	-	-	-	-	-	0.83	5	1	5	1	n	ENSMUSG00000029352.15	Crybb3	chr5	protein_coding	crystallin, beta B3
known_NIR_14012	chr5	113228530	113229422	-	113228530	113228898	5pMXE	ENSMUST00000118226.8	known	1.00	1	0	1	0	n	0.80	4	1	4	1	n	0.37	26	44	26	44	y	0.67	2	1	2	1	n	0.00	0	5	0	5	n	0.40	16	24	16	24	y	0.55	6	5	6	5	y	0.33	3	6	3	6	n	0.00	0	1	0	1	n	1.00	2	0	2	0	n	-	-	-	-	-	-	1.00	5	0	5	0	n	ENSMUSG00000029352.15	Crybb3	chr5	protein_coding	crystallin, beta B3
known_NIR_14013	chr5	113249443	113323071	-	113249443	113285571	5pMXE	ENSMUST00000212276.2	known	0.16	7	38	7	38	y	0.16	7	37	7	37	y	0.11	13	106	13	106	y	0.10	8	70	8	70	y	0.14	18	111	18	111	y	0.13	6	40	6	40	y	0.11	10	84	10	84	y	0.15	6	35	6	35	y	0.14	9	55	9	55	y	0.12	12	88	12	88	y	0.11	8	62	8	62	y	0.08	9	106	9	106	y	ENSMUSG00000051339.11	2900026A02Rik	chr5	protein_coding	RIKEN cDNA 2900026A02 gene
known_NIR_14014	chr5	113881364	113883108	-	113881364;113882795	113882605;113883108	ES	ENSMUST00000019118.8	known	0.04	1	27.5	1	31;24	n	0.03	1	31.0	1	34;28	n	0.12	4	29.0	4	26;32	y	0.05	1	19.0	1	16;22	n	0.13	5	34.5	5	27;42	y	0.00	0	11.0	0	9;13	n	0.00	0	31.5	0	28;35	n	0.05	1	18.0	1	18;18	n	0.00	0	22.0	0	20;24	n	0.00	0	31.0	0	26;36	n	0.04	1	24.5	1	17;32	n	0.00	0	25.0	0	26;24	n	ENSMUSG00000018974.8	Sart3	chr5	protein_coding	squamous cell carcinoma antigen recognized by T cells 3
known_NIR_14015	chr5	113881364	113883108	-	113882795	113883108	3pMXE	ENSMUST00000198246.2	known	0.04	1	24	1	24	n	0.03	1	28	1	28	n	0.11	4	32	4	32	y	0.04	1	22	1	22	n	0.11	5	42	5	42	y	0.00	0	13	0	13	n	0.00	0	35	0	35	n	0.05	1	18	1	18	n	0.00	0	24	0	24	n	0.00	0	36	0	36	n	0.03	1	32	1	32	n	0.00	0	24	0	24	n	ENSMUSG00000018974.8	Sart3	chr5	protein_coding	squamous cell carcinoma antigen recognized by T cells 3
known_NIR_14016	chr5	113892388	113893431	-	113892432	113893431	A3SS	ENSMUST00000019118.8	known	0.00	0	21	0	21	n	0.00	0	10	0	10	n	0.05	1	20	1	20	n	0.00	0	24	0	24	n	0.00	0	28	0	28	n	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.00	0	14	0	14	n	0.00	0	20	0	20	n	0.00	0	27	0	27	n	0.07	2	25	2	25	y	0.00	0	21	0	21	n	ENSMUSG00000018974.8	Sart3	chr5	protein_coding	squamous cell carcinoma antigen recognized by T cells 3
known_NIR_14017	chr5	113911157	113912324	+	113911005	113912324	A5SS	ENSMUST00000026937.12	known	0.02	7	339	7	339	y	0.02	6	355	6	355	y	0.01	4	360	4	360	y	0.02	6	325	6	325	y	0.03	15	473	15	473	y	0.00	1	253	1	253	n	0.01	5	442	5	442	y	0.03	7	222	7	222	y	0.02	6	341	6	341	y	0.01	3	475	3	475	y	0.01	5	404	5	404	y	0.01	5	426	5	426	y	ENSMUSG00000025825.13	Iscu	chr5	protein_coding	iron-sulfur cluster assembly enzyme
known_NIR_14018	chr5	113915139	113915894	+	113914910	113915894	A5SS	ENSMUST00000026937.12	known	0.02	10	572	10	572	y	0.02	11	560	11	560	y	0.05	26	516	26	516	y	0.03	13	463	13	463	y	0.02	13	643	13	643	y	0.02	9	378	9	378	y	0.02	14	699	14	699	y	0.02	7	356	7	356	y	0.01	6	486	6	486	y	0.02	18	863	18	863	y	0.02	15	673	15	673	y	0.04	27	671	27	671	y	ENSMUSG00000025825.13	Iscu	chr5	protein_coding	iron-sulfur cluster assembly enzyme
known_NIR_14019	chr5	114103956	114104241	-	114099479	114104241	A3SS	ENSMUST00000159592.8	known	0.22	2	7	2	7	n	0.00	0	5	0	5	n	0.00	0	23	0	23	n	0.21	3	11	3	11	y	0.06	1	16	1	16	n	0.00	0	12	0	12	n	0.12	2	15	2	15	y	0.00	0	17	0	17	n	0.20	1	4	1	4	n	0.00	0	22	0	22	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	ENSMUSG00000042121.17	Ssh1	chr5	protein_coding	slingshot protein phosphatase 1
known_NIR_14020	chr5	114249276	114249933	+	114249276	114249930	A3SS	ENSMUST00000031588.12	known	0.30	8	19	8	19	y	0.19	4	17	4	17	y	0.21	6	22	6	22	y	0.20	4	16	4	16	y	0.18	7	32	7	32	y	0.10	1	9	1	9	n	0.09	3	29	3	29	y	0.50	6	6	6	6	y	0.31	4	9	4	9	y	0.38	13	21	13	21	y	0.37	10	17	10	17	y	0.20	4	16	4	16	y	ENSMUSG00000029592.12	Usp30	chr5	protein_coding	ubiquitin specific peptidase 30
known_NIR_14021	chr5	114265830	114266022	-	114265830	114266144	A5SS	ENSMUST00000112279.2	known	0.00	0	7	0	7	n	0.27	3	8	3	8	y	0.17	2	10	2	10	y	0.20	2	8	2	8	y	0.46	6	7	6	7	y	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.14	1	6	1	6	n	0.13	2	13	2	13	y	0.25	2	6	2	6	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	ENSMUSG00000044339.13	Alkbh2	chr5	protein_coding	alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase
known_NIR_14022	chr5	114314251	114322111	+	114304201	114322111	A5SS	ENSMUST00000102582.8	known	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.23	3	10	3	10	y	0.22	2	7	2	7	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.00	0	13	0	13	n	0.09	2	21	2	21	y	ENSMUSG00000042010.17	Acacb	chr5	protein_coding	acetyl-Coenzyme A carboxylase beta
known_NIR_14023	chr5	114507091	114508120	-	114507088	114508120	A3SS	ENSMUST00000102581.11	known	0.23	3	10	3	10	y	0.19	3	13	3	13	y	0.20	9	37	9	37	y	0.05	1	19	1	19	n	0.21	7	26	7	26	y	0.17	5	25	5	25	y	0.17	4	19	4	19	y	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.16	3	16	3	16	y	0.21	3	11	3	11	y	0.22	6	21	6	21	y	ENSMUSG00000001098.16	Kctd10	chr5	protein_coding	potassium channel tetramerisation domain containing 10
known_NIR_14024	chr5	114525339	114526784	+	114525339;114525562	114525442;114526784	ES	ENSMUST00000074002.12	known	0.02	1	52.0	1	46;58	n	0.00	0	35.0	0	26;44	n	0.00	0	70.5	0	71;70	n	0.04	3	70.5	3	55;86	y	0.00	0	96.5	0	99;94	n	0.00	0	53.0	0	43;63	n	0.00	0	86.0	0	79;93	n	0.00	0	58.0	0	60;56	n	0.02	1	53.0	1	47;59	n	0.00	0	111.0	0	104;118	n	0.00	0	52.5	0	53;52	n	0.00	0	69.5	0	51;88	n	ENSMUSG00000029577.14	Ube3b	chr5	protein_coding	ubiquitin protein ligase E3B
known_NIR_14025	chr5	114539502	114540583	+	114539498	114540583	A5SS	ENSMUST00000074002.12	known	0.15	6	34	6	34	y	0.00	0	36	0	36	n	0.09	5	51	5	51	y	0.06	3	50	3	50	y	0.06	4	66	4	66	y	0.00	0	36	0	36	n	0.03	2	75	2	75	y	0.12	4	29	4	29	y	0.03	1	35	1	35	n	0.10	7	60	7	60	y	0.00	0	38	0	38	n	0.02	1	52	1	52	n	ENSMUSG00000029577.14	Ube3b	chr5	protein_coding	ubiquitin protein ligase E3B
known_NIR_14026	chr5	114574604;114575183	114574771;114575879	-	114574604	114575879	cassetteExon	ENSMUST00000112245.6	known	1.00	42.0	0	34;50	0	n	0.96	22.5	1	23;22	1	n	1.00	38.5	0	36;41	0	n	0.98	49.0	1	40;58	1	n	0.98	94.0	2	81;107	2	y	1.00	46.5	0	47;46	0	n	0.98	97.0	2	80;114	2	y	1.00	46.5	0	48;45	0	n	0.92	54.5	5	52;57	5	y	0.99	106.5	1	102;111	1	n	0.99	90.0	1	92;88	1	n	1.00	72.5	0	65;80	0	n	ENSMUSG00000029575.18	Mmab	chr5	protein_coding	methylmalonic aciduria (cobalamin deficiency) cblB type homolog (human)
known_NIR_14027	chr5	114582424	114583449	+	114582424;114582750	114582713;114583449	ES	ENSMUST00000137167.8	known	0.37	16	27.0	16	23;31	y	0.47	14	16.0	14	14;18	y	0.56	20	15.5	20	13;18	y	0.45	24	29.5	24	24;35	y	0.56	51	40.5	51	29;52	y	0.50	25	25.5	25	19;32	y	0.50	28	28.5	28	25;32	y	0.53	26	23.5	26	20;27	y	0.53	19	17.0	19	13;21	y	0.46	31	37.0	31	31;43	y	0.42	29	40.0	29	34;46	y	0.40	20	29.5	20	25;34	y	ENSMUSG00000041939.15	Mvk	chr5	protein_coding	mevalonate kinase
known_NIR_14028	chr5	114584367	114588302	+	114584367	114588338	A3SS	ENSMUST00000137167.8	known	0.20	18	71	18	71	y	0.17	9	43	9	43	y	0.16	13	66	13	66	y	0.23	21	70	21	70	y	0.17	31	147	31	147	y	0.26	29	81	29	81	y	0.23	28	95	28	95	y	0.23	15	51	15	51	y	0.35	28	51	28	51	y	0.25	29	88	29	88	y	0.24	28	89	28	89	y	0.27	26	72	26	72	y	ENSMUSG00000041939.15	Mvk	chr5	protein_coding	mevalonate kinase
known_NIR_14029	chr5	114872004	114877094	-	114872004;114875498	114875409;114877094	ES	ENSMUST00000112185.9	known	0.00	0	14.0	0	19;9	n	0.00	0	10.5	0	7;14	n	0.00	0	19.5	0	12;27	n	0.07	1	13.5	1	12;15	n	0.05	1	18.5	1	14;23	n	0.00	0	9.5	0	7;12	n	0.12	2	14.0	2	16;12	y	0.13	2	13.5	2	14;13	y	0.18	2	9.0	2	5;13	y	0.21	3	11.5	3	14;9	y	0.00	0	13.5	0	12;15	n	0.23	4	13.5	4	14;13	y	ENSMUSG00000041890.18	Git2	chr5	protein_coding	GIT ArfGAP 2
known_NIR_14030	chr5	114877342	114883490	-	114877342	114881792	5pMXE	ENSMUST00000146044.8	known	0.78	7	2	7	2	n	0.57	4	3	4	3	n	0.47	8	9	8	9	y	0.75	15	5	15	5	y	0.59	10	7	10	7	y	0.73	11	4	11	4	y	0.67	14	7	14	7	y	0.67	6	3	6	3	n	0.55	6	5	6	5	y	0.64	9	5	9	5	y	0.54	7	6	7	6	y	0.76	13	4	13	4	y	ENSMUSG00000041890.18	Git2	chr5	protein_coding	GIT ArfGAP 2
known_NIR_14031	chr5	114877342;114881941	114881792;114883490	-	114877342	114883490	cassetteExon	ENSMUST00000112185.9	known	0.26	2.5	7	2;3	7	y	0.62	6.5	4	3;10	4	y	0.56	10.0	8	9;11	8	y	0.30	6.5	15	5;8	15	y	0.47	9.0	10	7;11	10	y	0.24	3.5	11	4;3	11	y	0.32	6.5	14	7;6	14	y	0.29	2.5	6	3;2	6	y	0.40	4.0	6	5;3	6	y	0.51	9.5	9	5;14	9	y	0.39	4.5	7	6;3	7	y	0.24	4.0	13	4;4	13	y	ENSMUSG00000041890.18	Git2	chr5	protein_coding	GIT ArfGAP 2
known_NIR_14032	chr5	114890391	114891340	-	114890388	114891340	A3SS	ENSMUST00000112185.9	known	0.12	2	15	2	15	y	0.40	4	6	4	6	y	0.30	6	14	6	14	y	0.41	7	10	7	10	y	0.50	8	8	8	8	y	0.58	7	5	7	5	y	0.24	4	13	4	13	y	0.56	5	4	5	4	n	0.68	13	6	13	6	y	0.85	11	2	11	2	y	0.50	6	6	6	6	y	0.31	4	9	4	9	y	ENSMUSG00000041890.18	Git2	chr5	protein_coding	GIT ArfGAP 2
known_NIR_14033	chr5	114935975	114936579	+	114935975	114936582	A3SS	ENSMUST00000102578.11	known	0.16	6	31	6	31	y	0.11	3	25	3	25	y	0.18	8	37	8	37	y	0.22	9	32	9	32	y	0.17	8	39	8	39	y	0.23	7	23	7	23	y	0.21	9	34	9	34	y	0.12	5	35	5	35	y	0.07	2	25	2	25	y	0.08	3	34	3	34	y	0.09	3	31	3	31	y	0.11	3	25	3	25	y	ENSMUSG00000041870.18	Ankrd13a	chr5	protein_coding	ankyrin repeat domain 13a
known_NIR_14034	chr5	114951266	114951841	-	114947392	114951841	A3SS	ENSMUST00000112160.4	known	0.43	3	4	3	4	n	0.50	3	3	3	3	n	0.75	21	7	21	7	y	-	-	-	-	-	-	0.94	17	1	17	1	n	0.89	8	1	8	1	n	0.82	9	2	9	2	y	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.50	2	2	2	2	n	0.00	0	1	0	1	n	1.00	3	0	3	0	n	ENSMUSG00000072694.9	1500011B03Rik	chr5	protein_coding	RIKEN cDNA 1500011B03 gene
known_NIR_14035	chr5	115083966	115084077	+	115083887	115084077	A5SS	ENSMUST00000031538.9	known	0.12	3	22	3	22	y	0.09	2	21	2	21	y	0.06	2	30	2	30	y	0.04	1	24	1	24	n	0.12	4	28	4	28	y	0.20	3	12	3	12	y	0.04	2	46	2	46	y	0.00	0	15	0	15	n	0.05	1	20	1	20	n	0.00	0	31	0	31	n	0.04	1	25	1	25	n	0.06	2	32	2	32	y	ENSMUSG00000029559.16	2210016L21Rik	chr5	protein_coding	RIKEN cDNA 2210016L21 gene
known_NIR_14036	chr5	115108096	115117288	+	115108096	115135824	A3SS	ENSMUST00000125010.3	known	0.91	10	1	10	1	n	0.50	5	5	5	5	y	0.00	0	2	0	2	n	0.58	7	5	7	5	y	0.71	10	4	10	4	y	-	-	-	-	-	-	0.71	22	9	22	9	y	0.56	5	4	5	4	n	0.60	6	4	6	4	y	0.66	19	10	19	10	y	0.60	15	10	15	10	y	0.52	11	10	11	10	y	ENSMUSG00000086054.3	Hnf1aos1	chr5	lncRNA	HNF1 homeobox A, opposite strand 1
known_NIR_14037	chr5	115108096	115135824	+	115123944	115135824	A5SS&ES	ENSMUST00000129609.2	known	0.03	1	38	1	38	n	0.10	5	43	5	43	y	0.33	2	4	2	4	n	0.14	5	31	5	31	y	0.07	4	52	4	52	y	0.00	0	3	0	3	n	0.11	9	73	9	73	y	0.27	4	11	4	11	y	0.06	4	62	4	62	y	0.11	10	78	10	78	y	0.13	10	68	10	68	y	0.18	10	45	10	45	y	ENSMUSG00000086054.3	Hnf1aos1	chr5	lncRNA	HNF1 homeobox A, opposite strand 1
known_NIR_14038	chr5	115123353	115123808	+	115107136	115123808	A5SS	ENSMUST00000129609.2	known	1.00	3	0	3	0	n	1.00	6	0	6	0	n	1.00	1	0	1	0	n	0.78	7	2	7	2	n	1.00	4	0	4	0	n	-	-	-	-	-	-	1.00	9	0	9	0	n	1.00	3	0	3	0	n	0.86	12	2	12	2	y	0.78	7	2	7	2	n	0.82	9	2	9	2	y	0.60	6	4	6	4	y	ENSMUSG00000086054.3	Hnf1aos1	chr5	lncRNA	HNF1 homeobox A, opposite strand 1
known_NIR_14039	chr5	115251272	115257284	-	115251272;115255787	115255624;115257284	ES	ENSMUST00000131726.8	known	0.02	7	307.5	7	297;318	y	0.02	6	292.5	6	298;287	y	0.02	7	295.5	7	282;309	y	0.02	7	383.5	7	399;368	y	0.02	10	435.5	10	451;420	y	0.05	12	221.5	12	222;221	y	0.01	6	416.5	6	412;421	y	0.01	2	235.5	2	245;226	y	0.03	8	306.5	8	331;282	y	0.01	4	594.0	4	607;581	y	0.02	7	394.5	7	406;383	y	0.02	9	381.0	9	368;394	y	ENSMUSG00000029545.14	Acads	chr5	protein_coding	acyl-Coenzyme A dehydrogenase, short chain
known_NIR_14040	chr5	115376128	115378221	+	115376128;115376336	115376194;115378221	ES	ENSMUST00000081497.13	known	0.01	1	112.0	1	58;166	n	0.02	2	129.5	2	67;192	y	0.01	1	77.0	1	45;109	n	0.02	2	112.0	2	81;143	y	0.01	2	143.0	2	79;207	y	0.02	1	50.5	1	31;70	n	0.01	2	151.5	2	78;225	y	0.04	2	55.0	2	34;76	y	0.00	0	96.0	0	56;136	n	0.02	3	149.5	3	79;220	y	0.01	1	123.5	1	70;177	n	0.00	0	136.0	0	72;200	n	ENSMUSG00000060152.15	Pop5	chr5	protein_coding	processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)
known_NIR_14041	chr5	115376128	115378221	+	115376336	115378221	A5SS	ENSMUST00000154800.2	known	0.01	1	166	1	166	n	0.01	2	192	2	192	y	0.01	1	109	1	109	n	0.01	2	143	2	143	y	0.01	2	207	2	207	y	0.01	1	70	1	70	n	0.01	2	225	2	225	y	0.03	2	76	2	76	y	0.00	0	136	0	136	n	0.01	3	220	3	220	y	0.01	1	177	1	177	n	0.00	0	200	0	200	n	ENSMUSG00000060152.15	Pop5	chr5	protein_coding	processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)
known_NIR_14042	chr5	115378415	115378532	+	115378370	115378532	A5SS	ENSMUST00000081497.13	known	0.02	6	259	6	259	y	0.00	0	221	0	221	n	0.00	0	146	0	146	n	0.02	4	223	4	223	y	0.01	2	262	2	262	y	0.00	0	93	0	93	n	0.00	1	285	1	285	n	0.00	0	120	0	120	n	0.01	3	198	3	198	y	0.01	2	305	2	305	y	0.00	1	263	1	263	n	0.01	2	267	2	267	y	ENSMUSG00000060152.15	Pop5	chr5	protein_coding	processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)
known_NIR_14043	chr5	115380117	115380452	-	115380120	115380452	A3SS	ENSMUST00000112097.8	known	0.10	44	404	44	404	y	0.12	56	409	56	409	y	0.10	51	435	51	435	y	0.12	37	270	37	270	y	0.10	58	507	58	507	y	0.18	49	219	49	219	y	0.11	62	489	62	489	y	0.11	25	203	25	203	y	0.10	27	238	27	238	y	0.12	54	403	54	403	y	0.13	56	359	56	359	y	0.13	55	380	55	380	y	ENSMUSG00000041740.17	Rnf10	chr5	protein_coding	ring finger protein 10
known_NIR_14044	chr5	115380750	115383908	-	115380750;115382180	115382080;115383908	ES	ENSMUST00000112097.8	known	0.00	0	409.5	0	425;394	n	0.00	0	411.5	0	411;412	n	0.00	0	522.0	0	516;528	n	0.00	0	363.0	0	359;367	n	0.00	0	523.0	0	497;549	n	0.00	0	280.5	0	268;293	n	0.00	2	533.0	2	513;553	y	0.00	0	255.5	0	244;267	n	0.00	0	315.5	0	288;343	n	0.00	0	479.5	0	463;496	n	0.00	0	418.0	0	407;429	n	0.00	0	413.5	0	401;426	n	ENSMUSG00000041740.17	Rnf10	chr5	protein_coding	ring finger protein 10
known_NIR_14045	chr5	115380750	115383908	-	115382180	115383908	3pMXE	ENSMUST00000128954.2	known	0.00	0	394	0	394	n	0.00	0	412	0	412	n	0.00	0	528	0	528	n	0.00	0	367	0	367	n	0.00	0	549	0	549	n	0.00	0	293	0	293	n	0.00	2	553	2	553	y	0.00	0	267	0	267	n	0.00	0	343	0	343	n	0.00	0	496	0	496	n	0.00	0	429	0	429	n	0.00	0	426	0	426	n	ENSMUSG00000041740.17	Rnf10	chr5	protein_coding	ring finger protein 10
known_NIR_14046	chr5	115386768	115386974	-	115386774	115386974	A3SS	ENSMUST00000112097.8	known	0.01	4	372	4	372	y	0.00	0	387	0	387	n	0.00	0	534	0	534	n	0.00	0	384	0	384	n	0.01	6	491	6	491	y	0.00	1	256	1	256	n	0.02	8	493	8	493	y	0.00	1	212	1	212	n	0.00	0	293	0	293	n	0.01	7	494	7	494	y	0.00	0	379	0	379	n	0.01	6	411	6	411	y	ENSMUSG00000041740.17	Rnf10	chr5	protein_coding	ring finger protein 10
known_NIR_14047	chr5	115387229	115387456	-	115387232	115387456	A3SS	ENSMUST00000112097.8	known	0.90	296	34	296	34	y	0.90	281	30	281	30	y	0.86	421	70	421	70	y	0.90	288	32	288	32	y	0.91	413	42	413	42	y	0.91	235	24	235	24	y	0.92	418	36	418	36	y	0.89	187	23	187	23	y	0.91	251	26	251	26	y	0.92	449	41	449	41	y	0.91	311	32	311	32	y	0.90	346	40	346	40	y	ENSMUSG00000041740.17	Rnf10	chr5	protein_coding	ring finger protein 10
known_NIR_14048	chr5	115395232;115397605	115397553;115398178	-	115395232	115398178	cassetteExon	ENSMUST00000112097.8	known	0.06	13.5	197	15;12	197	y	0.06	10.0	155	9;11	155	y	0.02	7.5	323	8;7	323	y	0.07	18.5	229	21;16	229	y	0.05	17.5	334	18;17	334	y	0.03	5.0	184	4;6	184	y	0.04	12.0	327	16;8	327	y	0.05	9.0	160	7;11	160	y	0.02	4.0	160	5;3	160	y	0.06	19.5	285	23;16	285	y	0.02	4.0	182	4;4	182	y	0.05	10.0	212	14;6	212	y	ENSMUSG00000041740.17	Rnf10	chr5	protein_coding	ring finger protein 10
known_NIR_14049	chr5	115429099	115433725	+	115429099;115432974	115432886;115433725	ES	ENSMUST00000040421.11	known	0.03	2	59.0	2	47;71	y	0.05	4	75.5	4	73;78	y	0.03	2	63.5	2	58;69	y	0.02	1	61.0	1	56;66	n	0.01	1	85.0	1	79;91	n	0.00	0	39.0	0	37;41	n	0.02	2	96.0	2	73;119	y	0.00	0	34.5	0	34;35	n	0.00	0	62.0	0	59;65	n	0.03	3	94.5	3	82;107	y	0.00	0	99.0	0	78;120	n	0.03	2	75.0	2	77;73	y	ENSMUSG00000041733.11	Coq5	chr5	protein_coding	coenzyme Q5 methyltransferase
known_NIR_14050	chr5	115437956	115438572	-	115436892	115438572	A3SS	ENSMUST00000009157.4	known	0.00	0	469	0	469	n	0.01	3	497	3	497	y	0.01	5	760	5	760	y	0.00	0	347	0	347	n	0.00	1	697	1	697	n	0.01	6	546	6	546	y	0.00	0	645	0	645	n	0.01	2	393	2	393	y	0.00	0	298	0	298	n	0.00	0	370	0	370	n	0.00	0	409	0	409	n	0.00	1	278	1	278	n	ENSMUSG00000009013.6	Dynll1	chr5	protein_coding	dynein light chain LC8-type 1
known_NIR_14051	chr5	115465558;115466763	115466406;115468557	+	115465558	115468557	cassetteExon	ENSMUST00000031513.14	known	0.03	2.5	84	3;2	84	y	0.03	2.5	94	5;0	94	n	0.01	2.0	161	0;4	161	n	0.01	1.0	117	1;1	117	n	0.00	0.0	173	0;0	173	n	0.01	1.0	79	1;1	79	n	0.02	2.5	135	2;3	135	y	0.00	0.0	74	0;0	74	n	0.01	1.0	79	2;0	79	n	0.03	4.0	115	1;7	115	n	0.00	0.0	119	0;0	119	n	0.01	1.0	105	2;0	105	n	ENSMUSG00000029538.15	Srsf9	chr5	protein_coding	serine and arginine-rich splicing factor 9
known_NIR_14052	chr5	115468717;115469598	115469509;115470176	+	115468717	115470176	cassetteExon	ENSMUST00000031513.14	known	0.04	7.0	164	6;8	164	y	0.01	1.5	135	0;3	135	n	0.03	5.5	210	4;7	210	y	0.02	3.0	123	0;6	123	n	0.03	6.5	188	4;9	188	y	0.04	3.5	83	2;5	83	y	0.03	6.0	171	3;9	171	y	0.00	0.0	91	0;0	91	n	0.02	2.5	130	0;5	130	n	0.05	8.0	167	2;14	167	y	0.01	2.0	160	2;2	160	y	0.02	4.0	177	0;8	177	n	ENSMUSG00000029538.15	Srsf9	chr5	protein_coding	serine and arginine-rich splicing factor 9
known_NIR_14053	chr5	115618584	115620634	-	115618584	115620683	A5SS	ENSMUST00000112067.8	known	0.00	0	18	0	18	n	0.11	2	17	2	17	y	0.14	3	18	3	18	y	0.04	1	23	1	23	n	0.03	1	28	1	28	n	0.00	0	12	0	12	n	0.00	0	35	0	35	n	0.15	2	11	2	11	y	0.13	3	20	3	20	y	0.10	3	26	3	26	y	0.05	2	37	2	37	y	0.00	0	20	0	20	n	ENSMUSG00000029524.17	Sirt4	chr5	protein_coding	sirtuin 4
known_NIR_14054	chr5	115685007	115686341	+	115685007	115689547	A3SS	ENSMUST00000086523.7	known	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	19	0	19	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.80	8	2	8	2	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	ENSMUSG00000029528.20	Pxn	chr5	protein_coding	paxillin
known_NIR_14055	chr5	115685007	115686341	+	115685007	115689910	A3SS	ENSMUST00000067268.15	known	0.00	0	23	0	23	n	0.00	0	29	0	29	n	0.00	0	50	0	50	n	0.00	0	46	0	46	n	0.00	0	47	0	47	n	0.00	0	28	0	28	n	0.13	8	52	8	52	y	0.00	0	38	0	38	n	0.00	0	40	0	40	n	0.00	0	57	0	57	n	0.00	0	29	0	29	n	0.00	0	27	0	27	n	ENSMUSG00000029528.20	Pxn	chr5	protein_coding	paxillin
known_NIR_14056	chr5	115685007;115689648	115689547;115689910	+	115685007	115689910	cassetteExon	ENSMUST00000067268.15	known	0.16	4.5	23	4;5	23	y	0.13	4.5	29	2;7	29	y	0.23	15.0	50	19;11	50	y	0.06	3.0	46	3;3	46	y	0.14	7.5	47	9;6	47	y	0.11	3.5	28	2;5	28	y	0.16	10.0	52	2;18	52	y	0.11	4.5	38	4;5	38	y	0.13	6.0	40	6;6	40	y	0.14	9.0	57	8;10	57	y	0.08	2.5	29	2;3	29	y	0.23	8.0	27	10;6	27	y	ENSMUSG00000029528.20	Pxn	chr5	protein_coding	paxillin
known_NIR_14057	chr5	115697947	115698778	+	115697947	115698800	A3SS	ENSMUST00000086519.12	known	0.00	1	2548	1	2548	n	0.00	3	2418	3	2418	y	0.00	3	4092	3	4092	y	0.00	2	2566	2	2566	y	0.00	3	3552	3	3552	y	0.00	7	2293	7	2293	y	0.00	0	3681	0	3681	n	0.00	3	2182	3	2182	y	0.00	1	2022	1	2022	n	0.00	2	3039	2	3039	y	0.00	4	2322	4	2322	y	0.00	1	2676	1	2676	n	ENSMUSG00000067274.11	Rplp0	chr5	protein_coding	ribosomal protein, large, P0
known_NIR_14058	chr5	115749930	115750647	+	115749298	115750647	A5SS	ENSMUST00000064454.12	known	0.06	2	30	2	30	y	0.00	0	24	0	24	n	0.00	0	40	0	40	n	0.00	0	43	0	43	n	0.00	0	35	0	35	n	0.00	0	17	0	17	n	0.02	1	40	1	40	n	0.00	0	20	0	20	n	0.00	0	20	0	20	n	0.00	0	30	0	30	n	0.00	0	23	0	23	n	0.00	0	44	0	44	n	ENSMUSG00000041638.19	Gcn1	chr5	protein_coding	GCN1 activator of EIF2AK4
known_NIR_14059	chr5	115775825	115778143	+	115775825	115778139	A3SS	ENSMUST00000031492.15	known	0.17	5	24	5	24	y	0.00	0	15	0	15	n	0.00	0	38	0	38	n	0.00	0	27	0	27	n	0.00	0	42	0	42	n	0.00	0	30	0	30	n	0.07	3	39	3	39	y	0.08	2	22	2	22	y	0.00	0	20	0	20	n	0.00	0	28	0	28	n	0.00	0	23	0	23	n	0.00	0	40	0	40	n	ENSMUSG00000029518.16	Rab35	chr5	protein_coding	RAB35, member RAS oncogene family
known_NIR_14060	chr5	115789998	115790686	-	115789998	115793960	A5SS	ENSMUST00000055408.13	known	1.00	6	0	6	0	n	0.50	1	1	1	1	n	1.00	3	0	3	0	n	0.80	4	1	4	1	n	0.62	5	3	5	3	n	0.50	2	2	2	2	n	0.50	5	5	5	5	y	1.00	2	0	2	0	n	1.00	2	0	2	0	n	0.67	2	1	2	1	n	0.80	4	1	4	1	n	1.00	4	0	4	0	n	ENSMUSG00000041609.17	Bicdl1	chr5	protein_coding	BICD family like cargo adaptor 1
known_NIR_14061	chr5	116156140	116158433	-	116156140;116158177	116158063;116158433	ES	ENSMUST00000031486.14	known	0.00	0	54.0	0	54;54	n	0.00	0	63.0	0	52;74	n	0.01	1	92.0	1	88;96	n	0.00	0	40.5	0	39;42	n	0.00	0	63.5	0	63;64	n	0.00	0	43.5	0	39;48	n	0.00	0	62.0	0	62;62	n	0.00	0	53.5	0	48;59	n	0.04	2	47.0	2	44;50	y	0.07	5	70.5	5	64;77	y	0.02	1	47.5	1	48;47	n	0.00	0	64.5	0	57;72	n	ENSMUSG00000029513.15	Prkab1	chr5	protein_coding	protein kinase, AMP-activated, beta 1 non-catalytic subunit
known_NIR_14062	chr5	116156140	116158433	-	116158177	116158433	3pMXE	ENSMUST00000141018.2	known	0.00	0	54	0	54	n	0.00	0	74	0	74	n	0.01	1	96	1	96	n	0.00	0	42	0	42	n	0.00	0	64	0	64	n	0.00	0	48	0	48	n	0.00	0	62	0	62	n	0.00	0	59	0	59	n	0.04	2	50	2	50	y	0.06	5	77	5	77	y	0.02	1	47	1	47	n	0.00	0	72	0	72	n	ENSMUSG00000029513.15	Prkab1	chr5	protein_coding	protein kinase, AMP-activated, beta 1 non-catalytic subunit
known_NIR_14063	chr5	117271840	117323592	+	117258404	117323592	A5SS	ENSMUST00000111978.8	known	0.12	3	21	3	21	y	0.11	2	17	2	17	y	0.09	5	48	5	48	y	0.09	3	31	3	31	y	0.07	2	27	2	27	y	0.11	4	32	4	32	y	0.21	10	38	10	38	y	0.15	6	33	6	33	y	0.09	3	30	3	30	y	0.05	3	56	3	56	y	0.10	3	26	3	26	y	0.10	4	35	4	35	y	ENSMUSG00000061288.14	Taok3	chr5	protein_coding	TAO kinase 3
known_NIR_14064	chr5	117344591	117344712	+	117342460	117344712	A5SS	ENSMUST00000111978.8	known	0.00	0	22	0	22	n	0.00	0	30	0	30	n	0.04	2	46	2	46	y	0.00	0	37	0	37	n	0.00	0	44	0	44	n	0.00	0	32	0	32	n	0.00	0	31	0	31	n	0.00	0	29	0	29	n	0.00	0	39	0	39	n	0.00	0	52	0	52	n	0.00	0	33	0	33	n	0.00	0	34	0	34	n	ENSMUSG00000061288.14	Taok3	chr5	protein_coding	TAO kinase 3
known_NIR_14065	chr5	117499270	117501656	+	117495538	117501656	A5SS	ENSMUST00000031309.16	known	0.00	0	31	0	31	n	0.05	2	36	2	36	y	0.00	0	73	0	73	n	0.00	0	50	0	50	n	0.00	0	66	0	66	n	0.00	0	73	0	73	n	0.00	0	55	0	55	n	0.00	0	35	0	35	n	0.00	0	39	0	39	n	0.00	0	46	0	46	n	0.00	0	41	0	41	n	0.00	0	36	0	36	n	ENSMUSG00000029364.16	Wsb2	chr5	protein_coding	WD repeat and SOCS box-containing 2
known_NIR_14066	chr5	117517971	117518084	-	117517971	117518832	A5SS	ENSMUST00000086461.13	known	0.00	0	17	0	17	n	0.00	0	18	0	18	n	0.00	0	17	0	17	n	0.00	0	21	0	21	n	0.00	0	26	0	26	n	0.00	0	5	0	5	n	0.00	0	21	0	21	n	0.00	0	11	0	11	n	0.04	1	22	1	22	n	0.00	0	33	0	33	n	0.03	1	34	1	34	n	0.10	3	27	3	27	y	ENSMUSG00000029363.15	Rfc5	chr5	protein_coding	replication factor C (activator 1) 5
known_NIR_14067	chr5	118133567	118138403	+	118133567	118138382	A3SS	ENSMUST00000202447.4	known	0.62	53	33	53	33	y	0.72	43	17	43	17	y	0.90	35	4	35	4	y	0.72	88	35	88	35	y	0.79	108	28	108	28	y	0.77	33	10	33	10	y	0.69	68	30	68	30	y	0.75	38	13	38	13	y	0.75	76	26	76	26	y	0.75	130	44	130	44	y	0.76	90	29	90	29	y	0.71	109	44	109	44	y	ENSMUSG00000032898.10	Fbxo21	chr5	protein_coding	F-box protein 21
known_NIR_14068	chr5	118889819	118889905	+	118889819	118889932	A3SS	ENSMUST00000100816.8	known	0.12	1	7	1	7	n	0.23	3	10	3	10	y	0.12	2	14	2	14	y	0.33	4	8	4	8	y	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.18	2	9	2	9	y	0.50	3	3	3	3	n	0.00	0	5	0	5	n	ENSMUSG00000018076.13	Med13l	chr5	protein_coding	mediator complex subunit 13-like
known_NIR_14069	chr5	119812358;119813367	119813308;119813623	+	119812358	119813623	cassetteExon	ENSMUST00000079719.11	known	0.08	2.0	22	2;2	22	y	0.06	1.0	15	1;1	15	n	0.07	2.0	25	1;3	25	n	0.19	5.5	23	7;4	23	y	0.10	4.5	40	8;1	40	n	0.00	0.0	17	0;0	17	n	0.09	2.5	24	2;3	24	y	0.04	0.5	12	1;0	12	n	0.22	5.5	20	6;5	20	y	0.13	9.5	62	10;9	62	y	0.20	2.5	10	2;3	10	y	0.09	1.5	16	0;3	16	n	ENSMUSG00000018604.19	Tbx3	chr5	protein_coding	T-box 3
known_NIR_14070	chr5	120311219	120313924	+	120282178	120313924	A5SS	ENSMUST00000031590.12	known	0.21	4	15	4	15	y	0.00	0	22	0	22	n	0.00	0	16	0	16	n	0.00	0	24	0	24	n	0.00	0	25	0	25	n	0.00	0	10	0	10	n	0.05	1	21	1	21	n	0.08	1	11	1	11	n	0.00	0	13	0	13	n	0.12	3	21	3	21	y	0.07	1	13	1	13	n	0.06	1	17	1	17	n	ENSMUSG00000029594.13	Rbm19	chr5	protein_coding	RNA binding motif protein 19
known_NIR_14071	chr5	120601290	120605339	-	120601290	120610786	A5SS	ENSMUST00000052258.14	known	1.00	16	0	16	0	n	0.83	19	4	19	4	y	0.83	136	28	136	28	y	0.70	14	6	14	6	y	0.97	30	1	30	1	n	0.88	52	7	52	7	y	1.00	23	0	23	0	n	0.80	41	10	41	10	y	0.67	2	1	2	1	n	0.91	20	2	20	2	y	1.00	10	0	10	0	n	0.86	19	3	19	3	y	ENSMUSG00000029596.14	Sdsl	chr5	protein_coding	serine dehydratase-like
known_NIR_14072	chr5	120657983	120658839	+	120657983	120658668	A3SS&ES	ENSMUST00000068326.14	known	0.00	0	52	0	52	n	0.00	0	75	0	75	n	0.00	0	54	0	54	n	0.00	0	110	0	110	n	0.03	4	143	4	143	y	0.00	0	60	0	60	n	0.01	1	111	1	111	n	0.05	3	53	3	53	y	0.01	1	96	1	96	n	0.00	0	107	0	107	n	0.04	3	78	3	78	y	0.00	0	146	0	146	n	ENSMUSG00000032754.15	Slc8b1	chr5	protein_coding	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1
known_NIR_14073	chr5	120667728	120668381	+	120667728	120670925	A3SS	ENSMUST00000076051.12	known	0.72	73	28	73	28	y	0.74	103	37	103	37	y	0.77	60	18	60	18	y	0.74	95	33	95	33	y	0.77	139	42	139	42	y	0.78	58	16	58	16	y	0.78	119	34	119	34	y	0.75	63	21	63	21	y	0.75	82	27	82	27	y	0.66	73	37	73	37	y	0.70	95	41	95	41	y	0.71	127	51	127	51	y	ENSMUSG00000032754.15	Slc8b1	chr5	protein_coding	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1
known_NIR_14074	chr5	120669213	120670925	+	120667728	120670925	A5SS	ENSMUST00000076051.12	known	0.64	49	28	49	28	y	0.70	88	37	88	37	y	0.76	58	18	58	18	y	0.74	93	33	93	33	y	0.77	140	42	140	42	y	0.76	50	16	50	16	y	0.80	134	34	134	34	y	0.70	50	21	50	21	y	0.77	91	27	91	27	y	0.75	113	37	113	37	y	0.70	94	41	94	41	y	0.71	126	51	126	51	y	ENSMUSG00000032754.15	Slc8b1	chr5	protein_coding	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1
known_NIR_14075	chr5	120748027	120749443	-	120742312	120749443	A3SS	ENSMUST00000156356.2	known	0.75	6	2	6	2	n	0.88	7	1	7	1	n	0.80	4	1	4	1	n	0.91	10	1	10	1	n	1.00	13	0	13	0	n	1.00	3	0	3	0	n	0.87	13	2	13	2	y	1.00	3	0	3	0	n	0.73	8	3	8	3	y	1.00	11	0	11	0	n	0.79	11	3	11	3	y	0.73	8	3	8	3	y	ENSMUSG00000029600.11	Rita1	chr5	protein_coding	RBPJ interacting and tubulin associated 1
known_NIR_14076	chr5	120748027	120749443	-	120745308	120749443	A3SS	ENSMUST00000136070.8	known	0.75	6	2	6	2	n	1.00	7	0	7	0	n	1.00	4	0	4	0	n	0.83	10	2	10	2	y	1.00	13	0	13	0	n	1.00	3	0	3	0	n	1.00	13	0	13	0	n	1.00	3	0	3	0	n	0.80	8	2	8	2	y	0.92	11	1	11	1	n	1.00	11	0	11	0	n	1.00	8	0	8	0	n	ENSMUSG00000029600.11	Rita1	chr5	protein_coding	RBPJ interacting and tubulin associated 1
known_NIR_14077	chr5	120749794;120750139	120750045;120750339	-	120749794	120750339	cassetteExon	ENSMUST00000111884.8	known	0.33	4.5	9	7;2	9	y	0.22	2.5	9	0;5	9	n	0.04	0.5	13	0;1	13	n	0.20	3.0	12	1;5	12	n	0.20	3.5	14	3;4	14	y	0.20	2.0	8	3;1	8	n	0.31	4.0	9	5;3	9	y	0.33	3.5	7	2;5	7	y	0.41	5.5	8	5;6	8	y	0.12	2.0	15	2;2	15	y	0.19	2.5	11	3;2	11	y	0.14	2.0	12	2;2	12	y	ENSMUSG00000029600.11	Rita1	chr5	protein_coding	RBPJ interacting and tubulin associated 1
known_NIR_14078	chr5	121282759	121287166	-	121282747	121287166	A3SS	ENSMUST00000100770.9	known	0.40	25	38	25	38	y	0.29	12	29	12	29	y	0.50	54	53	54	53	y	0.28	21	54	21	54	y	0.31	31	68	31	68	y	0.43	21	28	21	28	y	0.38	38	63	38	63	y	0.51	20	19	20	19	y	0.36	17	30	17	30	y	0.40	38	56	38	56	y	0.37	19	33	19	33	y	0.34	31	61	31	61	y	ENSMUSG00000043733.15	Ptpn11	chr5	protein_coding	protein tyrosine phosphatase, non-receptor type 11
known_NIR_14079	chr5	121345258	121346473	+	121345258	121346454	A3SS	ENSMUST00000031617.13	known	0.01	25	2092	25	2092	y	0.01	14	2256	14	2256	y	0.01	19	2887	19	2887	y	0.01	13	1906	13	1906	y	0.01	18	2733	18	2733	y	0.01	12	1670	12	1670	y	0.01	27	2791	27	2791	y	0.01	14	1413	14	1413	y	0.01	18	1880	18	1880	y	0.01	19	2688	19	2688	y	0.01	27	2505	27	2505	y	0.01	23	2466	23	2466	y	ENSMUSG00000029614.14	Rpl6	chr5	protein_coding	ribosomal protein L6
known_NIR_14080	chr5	121430921	121433438	+	121430915	121433438	A5SS	ENSMUST00000042614.13	known	0.50	2	2	2	2	n	0.50	2	2	2	2	n	0.33	1	2	1	2	n	0.50	4	4	4	4	n	0.56	5	4	5	4	n	0.00	0	1	0	1	n	0.29	2	5	2	5	n	0.71	5	2	5	2	n	0.00	0	4	0	4	n	0.62	5	3	5	3	n	0.17	1	5	1	5	n	0.36	4	7	4	7	y	ENSMUSG00000042744.17	Hectd4	chr5	protein_coding	HECT domain E3 ubiquitin protein ligase 4
known_NIR_14081	chr5	121437706	121439805	+	121437706	121439832	A3SS	ENSMUST00000042614.13	known	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.18	2	9	2	9	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000042744.17	Hectd4	chr5	protein_coding	HECT domain E3 ubiquitin protein ligase 4
known_NIR_14082	chr5	121510738	121511213	-	121510738	121511201	A5SS	ENSMUST00000156158.6	known	0.38	48	79	48	79	y	0.33	37	75	37	75	y	0.22	20	71	20	71	y	0.33	42	86	42	86	y	0.22	27	95	27	95	y	0.32	9	19	9	19	y	0.23	35	117	35	117	y	0.22	9	32	9	32	y	0.31	34	77	34	77	y	0.30	53	125	53	125	y	0.29	35	85	35	85	y	0.33	45	90	45	90	y	ENSMUSG00000042726.15	Trafd1	chr5	protein_coding	TRAF type zinc finger domain containing 1
known_NIR_14083	chr5	121510738	121511402	-	121510738	121511201	A5SS	ENSMUST00000156158.6	known	0.00	0	79	0	79	n	0.11	9	75	9	75	y	0.05	4	71	4	71	y	0.00	0	86	0	86	n	0.11	12	95	12	95	y	0.17	4	19	4	19	y	0.03	4	117	4	117	y	0.16	6	32	6	32	y	0.03	2	77	2	77	y	0.05	6	125	6	125	y	0.08	7	85	7	85	y	0.07	7	90	7	90	y	ENSMUSG00000042726.15	Trafd1	chr5	protein_coding	TRAF type zinc finger domain containing 1
known_NIR_14084	chr5	121510738	121511402	-	121510738	121511213	A5SS	ENSMUST00000120784.8	known	0.00	0	48	0	48	n	0.20	9	37	9	37	y	0.17	4	20	4	20	y	0.00	0	42	0	42	n	0.31	12	27	12	27	y	0.31	4	9	4	9	y	0.10	4	35	4	35	y	0.40	6	9	6	9	y	0.06	2	34	2	34	y	0.10	6	53	6	53	y	0.17	7	35	7	35	y	0.13	7	45	7	45	y	ENSMUSG00000042726.15	Trafd1	chr5	protein_coding	TRAF type zinc finger domain containing 1
known_NIR_14085	chr5	121522167	121522808	-	121522167	121523372	A5SS	ENSMUST00000152265.8	known	0.09	4	40	4	40	y	0.06	2	31	2	31	y	0.12	6	45	6	45	y	0.10	5	43	5	43	y	0.13	9	60	9	60	y	0.00	0	21	0	21	n	0.06	3	49	3	49	y	0.19	7	29	7	29	y	0.08	4	44	4	44	y	0.12	8	59	8	59	y	0.10	3	26	3	26	y	0.03	2	65	2	65	y	ENSMUSG00000042726.15	Trafd1	chr5	protein_coding	TRAF type zinc finger domain containing 1
known_NIR_14086	chr5	121522167	121522820	-	121522167	121522808	A5SS	ENSMUST00000155379.8	known	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.17	1	5	1	5	n	0.18	2	9	2	9	y	-	-	-	-	-	-	0.67	6	3	6	3	n	0.00	0	7	0	7	n	0.33	2	4	2	4	n	0.11	1	8	1	8	n	0.25	1	3	1	3	n	0.71	5	2	5	2	n	ENSMUSG00000042726.15	Trafd1	chr5	protein_coding	TRAF type zinc finger domain containing 1
known_NIR_14087	chr5	121522167	121522820	-	121522167	121523372	A5SS	ENSMUST00000152265.8	known	0.00	0	40	0	40	n	0.00	0	31	0	31	n	0.00	0	45	0	45	n	0.02	1	43	1	43	n	0.03	2	60	2	60	y	0.00	0	21	0	21	n	0.11	6	49	6	49	y	0.00	0	29	0	29	n	0.04	2	44	2	44	y	0.02	1	59	1	59	n	0.04	1	26	1	26	n	0.07	5	65	5	65	y	ENSMUSG00000042726.15	Trafd1	chr5	protein_coding	TRAF type zinc finger domain containing 1
known_NIR_14088	chr5	121522167	121523372	-	121522167	121523588	A5SS	ENSMUST00000042312.14	known	0.87	40	6	40	6	y	0.86	31	5	31	5	y	0.75	45	15	45	15	y	0.86	43	7	43	7	y	0.85	60	11	60	11	y	0.70	21	9	21	9	y	0.91	49	5	49	5	y	0.97	29	1	29	1	n	0.79	44	12	44	12	y	0.77	59	18	59	18	y	0.84	26	5	26	5	y	0.92	65	6	65	6	y	ENSMUSG00000042726.15	Trafd1	chr5	protein_coding	TRAF type zinc finger domain containing 1
known_NIR_14089	chr5	121522167;121522908	121522808;121523588	-	121522167	121523588	cassetteExon	ENSMUST00000042312.14	known	0.37	3.5	6	4;3	6	y	0.17	1.0	5	2;0	5	n	0.17	3.0	15	6;0	15	n	0.30	3.0	7	5;1	7	n	0.33	5.5	11	9;2	11	y	0.00	0.0	9	0;0	9	n	0.41	3.5	5	3;4	5	y	0.82	4.5	1	7;2	1	n	0.14	2.0	12	4;0	12	n	0.20	4.5	18	8;1	18	n	0.23	1.5	5	3;0	5	n	0.25	2.0	6	2;2	6	y	ENSMUSG00000042726.15	Trafd1	chr5	protein_coding	TRAF type zinc finger domain containing 1
known_NIR_14090	chr5	121522167;121522908	121522820;121523588	-	121522167	121523588	cassetteExon	ENSMUST00000042312.14	known	0.20	1.5	6	0;3	6	n	0.00	0.0	5	0;0	5	n	0.00	0.0	15	0;0	15	n	0.12	1.0	7	1;1	7	n	0.15	2.0	11	2;2	11	y	0.00	0.0	9	0;0	9	n	0.50	5.0	5	6;4	5	y	0.50	1.0	1	0;2	1	n	0.08	1.0	12	2;0	12	n	0.05	1.0	18	1;1	18	n	0.09	0.5	5	1;0	5	n	0.37	3.5	6	5;2	6	y	ENSMUSG00000042726.15	Trafd1	chr5	protein_coding	TRAF type zinc finger domain containing 1
known_NIR_14091	chr5	121564889;121567524	121567396;121568668	+	121564889	121568668	cassetteExon	ENSMUST00000042163.15	known	0.10	3.5	30	3;4	30	y	0.06	1.5	22	0;3	22	n	0.06	3.0	48	2;4	48	y	0.06	2.0	31	3;1	31	n	0.09	5.5	55	8;3	55	y	0.04	1.0	24	2;0	24	n	0.04	1.5	32	3;0	32	n	0.13	3.0	20	3;3	20	y	0.08	1.5	18	1;2	18	n	0.02	0.5	32	1;0	32	n	0.07	2.0	28	3;1	28	n	0.11	2.5	20	2;3	20	y	ENSMUSG00000042719.18	Naa25	chr5	protein_coding	N(alpha)-acetyltransferase 25, NatB auxiliary subunit
known_NIR_14092	chr5	121583635	121590254	-	121583635;121585342	121585204;121590254	ES	ENSMUST00000130451.2	known	0.02	5	251.0	5	293;209	y	0.02	5	259.5	5	315;204	y	0.01	5	480.5	5	535;426	y	0.01	2	216.0	2	259;173	y	0.03	12	443.0	12	523;363	y	0.00	1	281.5	1	327;236	n	0.00	0	341.5	0	414;269	n	0.00	0	277.0	0	316;238	n	0.01	3	213.5	3	247;180	y	0.01	4	330.0	4	385;275	y	0.01	2	270.0	2	292;248	y	0.01	2	267.5	2	311;224	y	ENSMUSG00000029616.10	Erp29	chr5	protein_coding	endoplasmic reticulum protein 29
known_NIR_14093	chr5	121663830	121664802	-	121663830	121664808	A5SS	ENSMUST00000125946.8	known	0.81	116	27	116	27	y	0.72	118	46	118	46	y	0.71	144	59	144	59	y	0.75	94	31	94	31	y	0.71	123	50	123	50	y	0.82	45	10	45	10	y	0.83	162	34	162	34	y	0.74	55	19	55	19	y	0.81	104	25	104	25	y	0.78	135	38	135	38	y	0.68	104	48	104	48	y	0.77	91	27	91	27	y	ENSMUSG00000105340.6	Gm42878	chr5	protein_coding	predicted gene 42878
known_NIR_14094	chr5	121663830	121665154	-	121663830	121664802	A5SS&ES	ENSMUST00000152270.8	known	0.04	5	116	5	116	y	0.01	1	118	1	118	n	0.00	0	144	0	144	n	0.00	0	94	0	94	n	0.02	2	123	2	123	y	0.00	0	45	0	45	n	0.00	0	162	0	162	n	0.00	0	55	0	55	n	0.00	0	104	0	104	n	0.00	0	135	0	135	n	0.00	0	104	0	104	n	0.01	1	91	1	91	n	ENSMUSG00000029454.16	Mapkapk5	chr5	protein_coding	MAP kinase-activated protein kinase 5
known_NIR_14095	chr5	121663830	121665154	-	121663830;121664923	121664802;121665154	ES	ENSMUST00000031410.14	known	0.04	5	114.5	5	116;113	y	0.01	1	119.5	1	118;121	n	0.00	0	123.5	0	144;103	n	0.00	0	90.5	0	94;87	n	0.02	2	120.5	2	123;118	y	0.00	0	48.5	0	45;52	n	0.00	0	142.5	0	162;123	n	0.00	0	51.0	0	55;47	n	0.00	0	94.0	0	104;84	n	0.00	0	125.5	0	135;116	n	0.00	0	102.0	0	104;100	n	0.01	1	98.0	1	91;105	n	ENSMUSG00000029454.16	Mapkapk5	chr5	protein_coding	MAP kinase-activated protein kinase 5
known_NIR_14096	chr5	121663830	121665154	-	121663830;121664923	121664808;121665154	ES	ENSMUST00000125946.8	known	0.07	5	70.0	5	27;113	y	0.01	1	83.5	1	46;121	n	0.00	0	81.0	0	59;103	n	0.00	0	59.0	0	31;87	n	0.02	2	84.0	2	50;118	y	0.00	0	31.0	0	10;52	n	0.00	0	78.5	0	34;123	n	0.00	0	33.0	0	19;47	n	0.00	0	54.5	0	25;84	n	0.00	0	77.0	0	38;116	n	0.00	0	74.0	0	48;100	n	0.01	1	66.0	1	27;105	n	ENSMUSG00000105340.6	Gm42878	chr5	protein_coding	predicted gene 42878
known_NIR_14097	chr5	121672493	121673917	-	121672493	121683228	A5SS	ENSMUST00000111782.8	known	0.99	71	1	71	1	n	1.00	52	0	52	0	n	1.00	92	0	92	0	n	1.00	54	0	54	0	n	1.00	73	0	73	0	n	1.00	33	0	33	0	n	0.99	71	1	71	1	n	1.00	44	0	44	0	n	1.00	63	0	63	0	n	0.97	77	2	77	2	y	1.00	59	0	59	0	n	1.00	67	0	67	0	n	ENSMUSG00000029454.16	Mapkapk5	chr5	protein_coding	MAP kinase-activated protein kinase 5
known_NIR_14098	chr5	121672493	121675175	-	121672493	121673917	A5SS&ES	ENSMUST00000125946.8	known	0.12	10	71	10	71	y	0.12	7	52	7	52	y	0.07	7	92	7	92	y	0.08	5	54	5	54	y	0.06	5	73	5	73	y	0.00	0	33	0	33	n	0.05	4	71	4	71	y	0.04	2	44	2	44	y	0.06	4	63	4	63	y	0.09	8	77	8	77	y	0.06	4	59	4	59	y	0.11	8	67	8	67	y	ENSMUSG00000105340.6	Gm42878	chr5	protein_coding	predicted gene 42878
known_NIR_14099	chr5	121672493	121675175	-	121672493	121683228	A5SS	ENSMUST00000111782.8	known	0.91	10	1	10	1	n	1.00	7	0	7	0	n	1.00	7	0	7	0	n	1.00	5	0	5	0	n	1.00	5	0	5	0	n	-	-	-	-	-	-	0.80	4	1	4	1	n	1.00	2	0	2	0	n	1.00	4	0	4	0	n	0.80	8	2	8	2	y	1.00	4	0	4	0	n	1.00	8	0	8	0	n	ENSMUSG00000029454.16	Mapkapk5	chr5	protein_coding	MAP kinase-activated protein kinase 5
known_NIR_14100	chr5	121672493	121675175	-	121672493;121674006	121673917;121675175	ES	ENSMUST00000031410.14	known	0.12	10	74.5	10	71;78	y	0.11	7	57.5	7	52;63	y	0.07	7	88.0	7	92;84	y	0.08	5	60.5	5	54;67	y	0.06	5	73.0	5	73;73	y	0.00	0	38.0	0	33;43	n	0.05	4	73.0	4	71;75	y	0.04	2	46.0	2	44;48	y	0.07	4	54.0	4	63;45	y	0.09	8	81.0	8	77;85	y	0.06	4	58.0	4	59;57	y	0.11	8	66.0	8	67;65	y	ENSMUSG00000029454.16	Mapkapk5	chr5	protein_coding	MAP kinase-activated protein kinase 5
known_NIR_14101	chr5	121678638	121683228	-	121672493	121683228	A3SS	ENSMUST00000111782.8	known	0.97	36	1	36	1	n	1.00	30	0	30	0	n	1.00	62	0	62	0	n	1.00	40	0	40	0	n	1.00	44	0	44	0	n	1.00	14	0	14	0	n	0.98	52	1	52	1	n	1.00	28	0	28	0	n	1.00	27	0	27	0	n	0.97	59	2	59	2	y	1.00	35	0	35	0	n	1.00	49	0	49	0	n	ENSMUSG00000029454.16	Mapkapk5	chr5	protein_coding	MAP kinase-activated protein kinase 5
known_NIR_14102	chr5	121708824	121710080	-	121708824	121713959	A5SS	ENSMUST00000199369.5	known	1.00	3651	0	3651	0	n	1.00	3973	0	3973	0	n	1.00	3107	0	3107	0	n	1.00	4166	6	4166	6	y	1.00	3657	0	3657	0	n	1.00	1780	0	1780	0	n	1.00	4522	7	4522	7	y	1.00	1873	0	1873	0	n	1.00	4364	0	4364	0	n	1.00	6803	0	6803	0	n	1.00	5464	0	5464	0	n	1.00	5611	0	5611	0	n	ENSMUSG00000029455.15	Aldh2	chr5	protein_coding	aldehyde dehydrogenase 2, mitochondrial
known_NIR_14103	chr5	121710244	121710784	-	121710244	121710739	A5SS	ENSMUST00000031411.15	known	0.02	56	2921	56	2921	y	0.00	0	3081	0	3081	n	0.00	0	2627	0	2627	n	0.02	73	3497	73	3497	y	0.00	0	3154	0	3154	n	0.00	0	1402	0	1402	n	0.00	0	3425	0	3425	n	0.03	50	1607	50	1607	y	0.00	0	3425	0	3425	n	0.02	115	5357	115	5357	y	0.03	113	4070	113	4070	y	0.00	0	4275	0	4275	n	ENSMUSG00000029455.15	Aldh2	chr5	protein_coding	aldehyde dehydrogenase 2, mitochondrial
known_NIR_14104	chr5	121713267	121713959	-	121708824	121713959	A3SS	ENSMUST00000199369.5	known	1.00	2899	0	2899	0	n	1.00	2695	0	2695	0	n	1.00	2585	0	2585	0	n	1.00	3493	6	3493	6	y	1.00	3289	0	3289	0	n	1.00	1601	0	1601	0	n	1.00	3362	7	3362	7	y	1.00	1592	0	1592	0	n	1.00	3311	0	3311	0	n	1.00	5362	0	5362	0	n	1.00	4056	0	4056	0	n	1.00	4281	0	4281	0	n	ENSMUSG00000029455.15	Aldh2	chr5	protein_coding	aldehyde dehydrogenase 2, mitochondrial
known_NIR_14105	chr5	121717804	121718677	-	121717807	121718677	A3SS	ENSMUST00000031411.15	known	0.00	0	2109	0	2109	n	0.02	37	1808	37	1808	y	0.02	34	2065	34	2065	y	0.01	45	3019	45	3019	y	0.02	40	2610	40	2610	y	0.02	28	1165	28	1165	y	0.02	54	2777	54	2777	y	0.00	0	1368	0	1368	n	0.02	45	2584	45	2584	y	0.02	94	4398	94	4398	y	0.02	47	2913	47	2913	y	0.02	70	3521	70	3521	y	ENSMUSG00000029455.15	Aldh2	chr5	protein_coding	aldehyde dehydrogenase 2, mitochondrial
known_NIR_14106	chr5	121775457	121780675	-	121775457;121777368	121777187;121780675	ES	ENSMUST00000031412.12	known	0.05	1	19.5	1	16;23	n	0.13	2	13.0	2	17;9	y	0.00	0	10.5	0	15;6	n	0.03	1	29.5	1	43;16	n	0.18	5	23.5	5	25;22	y	0.00	0	9.5	0	8;11	n	0.11	3	25.0	3	27;23	y	0.15	2	11.5	2	10;13	y	0.09	2	20.0	2	20;20	y	0.03	1	35.5	1	33;38	n	0.14	3	18.5	3	18;19	y	0.07	3	40.5	3	56;25	y	ENSMUSG00000029456.13	Acad10	chr5	protein_coding	acyl-Coenzyme A dehydrogenase family, member 10
known_NIR_14107	chr5	121800224	121801305	+	121800224	121801359	A3SS	ENSMUST00000031414.15	known	0.05	7	144	7	144	y	0.07	9	111	9	111	y	0.03	5	163	5	163	y	0.06	14	231	14	231	y	0.07	13	176	13	176	y	0.01	1	90	1	90	n	0.04	9	191	9	191	y	0.11	10	84	10	84	y	0.14	21	124	21	124	y	0.06	17	260	17	260	y	0.09	16	171	16	171	y	0.07	19	240	19	240	y	ENSMUSG00000029458.15	Brap	chr5	protein_coding	BRCA1 associated protein
known_NIR_14108	chr5	121800224	121803162	+	121800224	121801359	3pMXE	ENSMUST00000148052.2	known	0.05	7	144	7	144	y	0.03	4	111	4	111	y	0.02	4	163	4	163	y	0.03	8	231	8	231	y	0.05	10	176	10	176	y	0.00	0	90	0	90	n	0.05	10	191	10	191	y	0.09	8	84	8	84	y	0.07	10	124	10	124	y	0.05	14	260	14	260	y	0.06	11	171	11	171	y	0.03	7	240	7	240	y	ENSMUSG00000029458.15	Brap	chr5	protein_coding	BRCA1 associated protein
known_NIR_14109	chr5	121800224	121803162	+	121800224;121801554	121801359;121803162	ES	ENSMUST00000031414.15	known	0.05	7	147.5	7	144;151	y	0.03	4	134.0	4	111;157	y	0.02	4	197.0	4	163;231	y	0.03	8	242.0	8	231;253	y	0.05	10	202.0	10	176;228	y	0.00	0	86.5	0	90;83	n	0.04	10	217.0	10	191;243	y	0.09	8	85.0	8	84;86	y	0.06	10	157.5	10	124;191	y	0.05	14	281.5	14	260;303	y	0.05	11	191.5	11	171;212	y	0.02	7	278.0	7	240;316	y	ENSMUSG00000029458.15	Brap	chr5	protein_coding	BRCA1 associated protein
known_NIR_14110	chr5	121800224;121801554	121801305;121803162	+	121800224	121803162	cassetteExon	ENSMUST00000140996.6	known	0.92	79.0	7	7;151	7	y	0.95	83.0	4	9;157	4	y	0.97	118.0	4	5;231	4	y	0.94	133.5	8	14;253	8	y	0.92	120.5	10	13;228	10	y	1.00	42.0	0	1;83	0	n	0.93	126.0	10	9;243	10	y	0.86	48.0	8	10;86	8	y	0.91	106.0	10	21;191	10	y	0.92	160.0	14	17;303	14	y	0.91	114.0	11	16;212	11	y	0.96	167.5	7	19;316	7	y	ENSMUSG00000029458.15	Brap	chr5	protein_coding	BRCA1 associated protein
known_NIR_14111	chr5	121804780	121810148	+	121803351	121810148	A5SS	ENSMUST00000031414.15	known	0.02	2	127	2	127	y	0.01	1	69	1	69	n	0.03	3	116	3	116	y	0.00	0	172	0	172	n	0.00	0	166	0	166	n	0.00	0	61	0	61	n	0.00	0	155	0	155	n	0.02	1	61	1	61	n	0.03	3	101	3	101	y	0.02	3	168	3	168	y	0.01	1	95	1	95	n	0.01	1	150	1	150	n	ENSMUSG00000029458.15	Brap	chr5	protein_coding	BRCA1 associated protein
known_NIR_14112	chr5	121850339	121883786	+	121849586	121883786	A5SS	ENSMUST00000162611.8	known	1.00	10	0	10	0	n	1.00	4	0	4	0	n	1.00	10	0	10	0	n	0.83	15	3	15	3	y	1.00	14	0	14	0	n	1.00	7	0	7	0	n	1.00	2	0	2	0	n	1.00	5	0	5	0	n	1.00	3	0	3	0	n	1.00	13	0	13	0	n	1.00	5	0	5	0	n	1.00	13	0	13	0	n	ENSMUSG00000042605.17	Atxn2	chr5	protein_coding	ataxin 2
known_NIR_14113	chr5	121851087	121883786	+	121850339	121883786	A5SS	ENSMUST00000051950.14	known	0.38	6	10	6	10	y	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.06	1	15	1	15	n	0.07	1	14	1	14	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.07	1	13	1	13	n	0.00	0	5	0	5	n	0.13	2	13	2	13	y	ENSMUSG00000042605.17	Atxn2	chr5	protein_coding	ataxin 2
known_NIR_14114	chr5	121917659	121921920	+	121917659	121919396	3pMXE	ENSMUST00000225761.2	known	0.17	4	19	4	19	y	0.00	0	12	0	12	n	0.00	0	35	0	35	n	0.14	5	31	5	31	y	0.00	0	47	0	47	n	0.00	0	22	0	22	n	0.04	2	49	2	49	y	0.00	0	22	0	22	n	0.00	0	22	0	22	n	0.00	0	35	0	35	n	0.00	0	35	0	35	n	0.00	0	35	0	35	n	ENSMUSG00000042605.17	Atxn2	chr5	protein_coding	ataxin 2
known_NIR_14115	chr5	121917659	121921920	+	121917659;121919605	121919396;121921920	ES	ENSMUST00000051950.14	known	0.20	4	16.0	4	19;13	y	0.00	0	15.5	0	12;19	n	0.00	0	30.0	0	35;25	n	0.12	5	37.0	5	31;43	y	0.00	0	39.5	0	47;32	n	0.00	0	21.0	0	22;20	n	0.05	2	39.5	2	49;30	y	0.00	0	25.5	0	22;29	n	0.00	0	31.5	0	22;41	n	0.00	0	52.0	0	35;69	n	0.00	0	31.5	0	35;28	n	0.00	0	35.5	0	35;36	n	ENSMUSG00000042605.17	Atxn2	chr5	protein_coding	ataxin 2
known_NIR_14116	chr5	121935848	121940144	+	121935854	121940144	A5SS	ENSMUST00000051950.14	known	0.43	21	28	21	28	y	0.42	19	26	19	26	y	0.70	35	15	35	15	y	0.55	26	21	26	21	y	0.52	38	35	38	35	y	0.68	19	9	19	9	y	0.57	43	32	43	32	y	0.86	24	4	24	4	y	0.57	31	23	31	23	y	0.70	59	25	59	25	y	0.57	29	22	29	22	y	0.49	25	26	25	26	y	ENSMUSG00000042605.17	Atxn2	chr5	protein_coding	ataxin 2
known_NIR_14117	chr5	121941143	121948914	+	121941143;121944338	121944285;121948914	ES	ENSMUST00000051950.14	known	0.85	47	8.0	47	7;9	y	0.89	48	6.0	48	4;8	y	0.88	70	10.0	70	12;8	y	0.83	67	13.5	67	16;11	y	0.75	64	21.5	64	18;25	y	0.90	46	5.0	46	5;5	y	0.80	57	14.0	57	12;16	y	0.89	45	5.5	45	8;3	y	0.94	68	4.5	68	4;5	y	0.89	103	12.5	103	10;15	y	0.86	68	11.5	68	11;12	y	0.78	56	15.5	56	11;20	y	ENSMUSG00000042605.17	Atxn2	chr5	protein_coding	ataxin 2
known_NIR_14118	chr5	121941143	121948914	+	121944338	121948914	5pMXE	ENSMUST00000159928.2	known	0.84	47	9	47	9	y	0.86	48	8	48	8	y	0.90	70	8	70	8	y	0.86	67	11	67	11	y	0.72	64	25	64	25	y	0.90	46	5	46	5	y	0.78	57	16	57	16	y	0.94	45	3	45	3	y	0.93	68	5	68	5	y	0.87	103	15	103	15	y	0.85	68	12	68	12	y	0.74	56	20	56	20	y	ENSMUSG00000042605.17	Atxn2	chr5	protein_coding	ataxin 2
known_NIR_14119	chr5	121949675	121952401	+	121949675	121951448	3pMXE	ENSMUST00000160462.2	known	0.29	20	50	20	50	y	0.40	36	55	36	55	y	0.32	27	58	27	58	y	0.34	27	53	27	53	y	0.49	49	52	49	52	y	0.43	19	25	19	25	y	0.42	33	46	33	46	y	0.22	13	45	13	45	y	0.26	21	60	21	60	y	0.32	35	75	35	75	y	0.24	25	81	25	81	y	0.28	28	71	28	71	y	ENSMUSG00000042605.17	Atxn2	chr5	protein_coding	ataxin 2
known_NIR_14120	chr5	121949675	121952401	+	121949675;121951616	121951448;121952401	ES	ENSMUST00000051950.14	known	0.33	20	41.0	20	50;32	y	0.43	36	48.0	36	55;41	y	0.31	27	61.0	27	58;64	y	0.32	27	57.0	27	53;61	y	0.47	49	55.0	49	52;58	y	0.46	19	22.5	19	25;20	y	0.40	33	49.0	33	46;52	y	0.25	13	39.0	13	45;33	y	0.28	21	54.0	21	60;48	y	0.33	35	70.5	35	75;66	y	0.26	25	70.0	25	81;59	y	0.31	28	61.0	28	71;51	y	ENSMUSG00000042605.17	Atxn2	chr5	protein_coding	ataxin 2
known_NIR_14121	chr5	121949675	121952656	+	121949675	121951448	A3SS&ES	ENSMUST00000051950.14	known	0.00	0	50	0	50	n	0.00	0	55	0	55	n	0.00	0	58	0	58	n	0.00	0	53	0	53	n	0.00	0	52	0	52	n	0.00	0	25	0	25	n	0.00	0	46	0	46	n	0.00	0	45	0	45	n	0.00	0	60	0	60	n	0.00	0	75	0	75	n	0.00	0	81	0	81	n	0.03	2	71	2	71	y	ENSMUSG00000042605.17	Atxn2	chr5	protein_coding	ataxin 2
known_NIR_14122	chr5	121949675	121952656	+	121949675	121952401	A3SS	ENSMUST00000161064.8	known	0.00	0	20	0	20	n	0.00	0	36	0	36	n	0.00	0	27	0	27	n	0.00	0	27	0	27	n	0.00	0	49	0	49	n	0.00	0	19	0	19	n	0.00	0	33	0	33	n	0.00	0	13	0	13	n	0.00	0	21	0	21	n	0.00	0	35	0	35	n	0.00	0	25	0	25	n	0.07	2	28	2	28	y	ENSMUSG00000042605.17	Atxn2	chr5	protein_coding	ataxin 2
known_NIR_14123	chr5	121956712	121956823	-	121956742	121956823	A3SS	ENSMUST00000086310.8	known	0.00	0	22	0	22	n	0.00	0	12	0	12	n	0.11	2	16	2	16	y	0.00	0	36	0	36	n	0.00	0	33	0	33	n	0.00	0	10	0	10	n	0.00	0	18	0	18	n	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.00	0	34	0	34	n	0.00	0	21	0	21	n	0.00	0	17	0	17	n	ENSMUSG00000042594.17	Sh2b3	chr5	protein_coding	SH2B adaptor protein 3
known_NIR_14124	chr5	121967139;121970653	121970566;121974613	-	121967139	121974613	cassetteExon	ENSMUST00000136960.8	known	0.39	4.5	7	4;5	7	y	0.44	7.0	9	8;6	9	y	0.12	2.0	15	0;4	15	n	0.38	8.0	13	9;7	13	y	0.35	6.5	12	9;4	12	y	0.29	2.5	6	2;3	6	y	0.70	9.5	4	13;6	4	y	0.33	2.0	4	4;0	4	n	0.50	8.0	8	11;5	8	y	0.31	5.5	12	9;2	12	y	0.48	7.5	8	6;9	8	y	0.34	11.0	21	20;2	21	y	ENSMUSG00000042594.17	Sh2b3	chr5	protein_coding	SH2B adaptor protein 3
known_NIR_14125	chr5	121987187;121988609	121988533;121989231	+	121987187	121989231	cassetteExon	ENSMUST00000198271.5	known	0.70	7.0	3	3;11	3	y	0.86	12.5	2	9;16	2	y	0.60	7.5	5	8;7	5	y	0.63	8.5	5	5;12	5	y	0.92	24.0	2	22;26	2	y	1.00	9.5	0	10;9	0	n	0.70	9.5	4	6;13	4	y	1.00	10.5	0	7;14	0	n	0.75	18.0	6	16;20	6	y	0.69	9.0	4	8;10	4	y	1.00	11.0	0	10;12	0	n	0.88	14.0	2	13;15	2	y	ENSMUSG00000044134.10	Pheta1	chr5	protein_coding	PH domain containing endocytic trafficking adaptor 1
known_NIR_14126	chr5	121989342	121990621	+	121989342	121990614	A3SS	ENSMUST00000198271.5	known	0.00	0	17	0	17	n	0.14	3	18	3	18	y	0.14	3	19	3	19	y	0.04	1	22	1	22	n	0.08	2	22	2	22	y	0.06	1	16	1	16	n	0.00	0	22	0	22	n	0.00	0	16	0	16	n	0.00	0	25	0	25	n	0.00	0	21	0	21	n	0.00	0	17	0	17	n	0.05	1	21	1	21	n	ENSMUSG00000044134.10	Pheta1	chr5	protein_coding	PH domain containing endocytic trafficking adaptor 1
known_NIR_14127	chr5	122307212	122310795	+	122307212;122309989	122309885;122310795	ES	ENSMUST00000102528.11	known	0.00	1	223.0	1	198;248	n	0.00	0	223.5	0	204;243	n	0.01	3	359.0	3	344;374	y	0.01	2	271.0	2	257;285	y	0.00	0	386.5	0	362;411	n	0.02	5	200.0	5	200;200	y	0.00	0	368.0	0	344;392	n	0.00	0	203.5	0	194;213	n	0.01	3	212.5	3	220;205	y	0.01	2	369.5	2	348;391	y	0.01	2	236.5	2	225;248	y	0.00	1	323.0	1	314;332	n	ENSMUSG00000004455.17	Ppp1cc	chr5	protein_coding	protein phosphatase 1 catalytic subunit gamma
known_NIR_14128	chr5	122307212	122310795	+	122309989	122310795	5pMXE	ENSMUST00000142562.2	known	0.00	1	248	1	248	n	0.00	0	243	0	243	n	0.01	3	374	3	374	y	0.01	2	285	2	285	y	0.00	0	411	0	411	n	0.02	5	200	5	200	y	0.00	0	392	0	392	n	0.00	0	213	0	213	n	0.01	3	205	3	205	y	0.01	2	391	2	391	y	0.01	2	248	2	248	y	0.00	1	332	1	332	n	ENSMUSG00000004455.17	Ppp1cc	chr5	protein_coding	protein phosphatase 1 catalytic subunit gamma
known_NIR_14129	chr5	122310866	122311209	+	122311018	122311209	A5SS	ENSMUST00000102528.11	known	0.00	1	212	1	212	n	0.01	2	232	2	232	y	0.00	1	366	1	366	n	0.02	6	243	6	243	y	0.01	3	362	3	362	y	0.03	5	193	5	193	y	0.00	1	376	1	376	n	0.01	2	210	2	210	y	0.00	0	220	0	220	n	0.00	0	352	0	352	n	0.00	1	207	1	207	n	0.00	0	250	0	250	n	ENSMUSG00000004455.17	Ppp1cc	chr5	protein_coding	protein phosphatase 1 catalytic subunit gamma
known_NIR_14130	chr5	122492539	122498009	+	122492539	122498076	A3SS	ENSMUST00000155671.8	known	0.02	2	89	2	89	y	0.00	0	113	0	113	n	0.00	0	108	0	108	n	0.00	0	121	0	121	n	0.00	0	114	0	114	n	0.00	0	60	0	60	n	0.00	0	125	0	125	n	0.00	0	62	0	62	n	0.00	0	102	0	102	n	0.00	0	98	0	98	n	0.00	0	88	0	88	n	0.00	0	93	0	93	n	ENSMUSG00000029462.19	Vps29	chr5	protein_coding	VPS29 retromer complex component
known_NIR_14131	chr5	122492539	122498092	+	122492539	122494857	A3SS&ES	ENSMUST00000118830.8	known	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.17	1	5	1	5	n	1.00	2	0	2	0	n	0.30	3	7	3	7	y	0.36	4	7	4	7	y	0.50	4	4	4	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.40	2	3	2	3	n	0.00	0	4	0	4	n	ENSMUSG00000029462.19	Vps29	chr5	protein_coding	VPS29 retromer complex component
known_NIR_14132	chr5	122492539	122498092	+	122492539	122498076	A3SS	ENSMUST00000155671.8	known	0.00	0	89	0	89	n	0.00	0	113	0	113	n	0.01	1	108	1	108	n	0.02	2	121	2	121	y	0.03	3	114	3	114	y	0.06	4	60	4	60	y	0.03	4	125	4	125	y	0.00	0	62	0	62	n	0.00	0	102	0	102	n	0.00	0	98	0	98	n	0.02	2	88	2	88	y	0.00	0	93	0	93	n	ENSMUSG00000029462.19	Vps29	chr5	protein_coding	VPS29 retromer complex component
known_NIR_14133	chr5	122492539;122494868	122494857;122498076	+	122492539	122498076	cassetteExon	ENSMUST00000155671.8	known	0.01	0.5	89	1;0	89	n	0.04	5.0	113	6;4	113	y	0.04	5.0	108	5;5	108	y	0.00	0.0	121	0;0	121	n	0.06	7.5	114	7;8	114	y	0.12	8.0	60	7;9	60	y	0.04	5.0	125	4;6	125	y	0.03	2.0	62	2;2	62	y	0.02	2.5	102	2;3	102	y	0.07	7.0	98	7;7	98	y	0.04	3.5	88	3;4	88	y	0.04	3.5	93	4;3	93	y	ENSMUSG00000029462.19	Vps29	chr5	protein_coding	VPS29 retromer complex component
known_NIR_14134	chr5	122492539;122497760	122497715;122498076	+	122492539	122498076	cassetteExon	ENSMUST00000155671.8	known	0.00	0.0	89	0;0	89	n	0.00	0.0	113	0;0	113	n	0.00	0.0	108	0;0	108	n	0.00	0.0	121	0;0	121	n	0.00	0.0	114	0;0	114	n	0.02	1.0	60	0;2	60	n	0.02	2.5	125	3;2	125	y	0.00	0.0	62	0;0	62	n	0.00	0.0	102	0;0	102	n	0.01	0.5	98	0;1	98	n	0.01	0.5	88	0;1	88	n	0.01	1.0	93	0;2	93	n	ENSMUSG00000029462.19	Vps29	chr5	protein_coding	VPS29 retromer complex component
known_NIR_14135	chr5	122492539;122497760	122497715;122498076	+	122492539;122494868	122494857;122498076	MXE	ENSMUST00000118830.8	known	0.00	0.0	0.5	0;0	1;0	n	0.00	0.0	5.0	0;0	6;4	n	0.00	0.0	5.0	0;0	5;5	n	-	-	-	-	-	-	0.00	0.0	7.5	0;0	7;8	n	0.11	1.0	8.0	0;2	7;9	n	0.33	2.5	5.0	3;2	4;6	y	0.00	0.0	2.0	0;0	2;2	n	0.00	0.0	2.5	0;0	2;3	n	0.07	0.5	7.0	0;1	7;7	n	0.12	0.5	3.5	0;1	3;4	n	0.22	1.0	3.5	0;2	4;3	n	ENSMUSG00000029462.19	Vps29	chr5	protein_coding	VPS29 retromer complex component
known_NIR_14136	chr5	122498267	122500868	+	122498267	122500099	3pMXE	ENSMUST00000117868.8	known	0.03	3	116	3	116	y	0.01	2	144	2	144	y	0.01	2	172	2	172	y	0.03	4	137	4	137	y	0.00	0	159	0	159	n	0.01	1	83	1	83	n	0.04	5	136	5	136	y	0.00	0	79	0	79	n	0.02	2	116	2	116	y	0.02	3	150	3	150	y	0.00	0	110	0	110	n	0.03	5	161	5	161	y	ENSMUSG00000029462.19	Vps29	chr5	protein_coding	VPS29 retromer complex component
known_NIR_14137	chr5	122498267	122500868	+	122498267;122500334	122500099;122500868	ES	ENSMUST00000155671.8	known	0.02	3	138.0	3	116;160	y	0.01	2	145.0	2	144;146	y	0.01	2	171.0	2	172;170	y	0.03	4	146.0	4	137;155	y	0.00	0	166.0	0	159;173	n	0.01	1	85.5	1	83;88	n	0.03	5	161.0	5	136;186	y	0.00	0	93.5	0	79;108	n	0.02	2	129.5	2	116;143	y	0.02	3	181.5	3	150;213	y	0.00	0	141.5	0	110;173	n	0.03	5	182.0	5	161;203	y	ENSMUSG00000029462.19	Vps29	chr5	protein_coding	VPS29 retromer complex component
known_NIR_14138	chr5	122592367	122595366	-	122592367	122593956	A5SS	ENSMUST00000179939.8	known	0.36	8	14	8	14	y	0.44	8	10	8	10	y	0.42	10	14	10	14	y	0.45	10	12	10	12	y	0.24	7	22	7	22	y	0.55	12	10	12	10	y	0.93	148	12	148	12	y	0.42	5	7	5	7	y	0.67	6	3	6	3	n	0.64	16	9	16	9	y	0.45	9	11	9	11	y	0.32	6	13	6	13	y	ENSMUSG00000029467.16	Atp2a2	chr5	protein_coding	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
known_NIR_14139	chr5	122627160	122627301	-	122611353	122627301	A3SS	ENSMUST00000179939.8	known	0.02	3	187	3	187	y	0.01	1	122	1	122	n	0.00	0	694	0	694	n	0.00	0	257	0	257	n	0.01	2	395	2	395	y	0.00	0	335	0	335	n	0.00	0	391	0	391	n	0.01	2	348	2	348	y	0.01	1	162	1	162	n	0.00	1	237	1	237	n	0.03	5	153	5	153	y	0.00	1	231	1	231	n	ENSMUSG00000029467.16	Atp2a2	chr5	protein_coding	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
known_NIR_14140	chr5	122845850	122856376	+	122845850;122852609	122852462;122856376	ES	ENSMUST00000031429.14	known	0.03	4	124.5	4	106;143	y	0.01	1	101.5	1	83;120	n	0.03	12	333.5	12	299;368	y	0.02	3	152.0	3	123;181	y	0.02	5	208.5	5	166;251	y	0.01	2	219.5	2	203;236	y	0.02	3	164.0	3	150;178	y	0.00	0	189.0	0	169;209	n	0.02	3	132.5	3	96;169	y	0.01	2	191.0	2	160;222	y	0.02	3	127.0	3	106;148	y	0.03	7	219.5	7	184;255	y	ENSMUSG00000029470.16	P2rx4	chr5	protein_coding	purinergic receptor P2X, ligand-gated ion channel 4
known_NIR_14141	chr5	122857289	122863053	+	122857289;122862737	122862657;122863053	ES	ENSMUST00000031429.14	known	0.04	5	114.0	5	127;101	y	0.07	8	103.0	8	95;111	y	0.06	25	362.0	25	356;368	y	0.05	6	126.0	6	132;120	y	0.04	9	192.5	9	166;219	y	0.03	6	216.5	6	212;221	y	0.06	11	163.5	11	157;170	y	0.05	9	167.0	9	169;165	y	0.10	14	124.0	14	120;128	y	0.03	7	196.5	7	196;197	y	0.04	5	135.5	5	128;143	y	0.02	6	236.5	6	224;249	y	ENSMUSG00000029470.16	P2rx4	chr5	protein_coding	purinergic receptor P2X, ligand-gated ion channel 4
known_NIR_14142	chr5	122865354	122865808	+	122865354;122865527	122865462;122865808	ES	ENSMUST00000031429.14	known	0.01	1	128.5	1	137;120	n	0.04	6	161.0	6	174;148	y	0.01	4	353.5	4	385;322	y	0.00	0	160.0	0	171;149	n	0.01	3	205.0	3	229;181	y	0.02	4	197.0	4	215;179	y	0.00	0	195.0	0	199;191	n	0.04	6	164.0	6	174;154	y	0.01	1	146.0	1	165;127	n	0.00	0	199.5	0	236;163	n	0.01	1	134.0	1	154;114	n	0.01	2	228.5	2	253;204	y	ENSMUSG00000029470.16	P2rx4	chr5	protein_coding	purinergic receptor P2X, ligand-gated ion channel 4
known_NIR_14143	chr5	122872308	122875496	-	122872308;122875093	122875051;122875496	ES	ENSMUST00000111668.8	known	0.97	15	0.5	15	0;1	n	0.90	9	1.0	9	1;1	n	0.91	20	2.0	20	2;2	y	0.79	17	4.5	17	3;6	y	0.84	23	4.5	23	2;7	y	0.88	7	1.0	7	1;1	n	0.58	9	6.5	9	6;7	y	0.88	7	1.0	7	2;0	n	0.64	7	4.0	7	2;6	y	0.93	19	1.5	19	2;1	n	0.93	19	1.5	19	1;2	n	0.96	12	0.5	12	0;1	n	ENSMUSG00000029471.14	Camkk2	chr5	protein_coding	calcium/calmodulin-dependent protein kinase kinase 2, beta
known_NIR_14144	chr5	122872308	122875496	-	122875093	122875496	A3SS	ENSMUST00000198029.5	known	0.94	15	1	15	1	n	0.90	9	1	9	1	n	0.91	20	2	20	2	y	0.74	17	6	17	6	y	0.77	23	7	23	7	y	0.88	7	1	7	1	n	0.56	9	7	9	7	y	1.00	7	0	7	0	n	0.54	7	6	7	6	y	0.95	19	1	19	1	n	0.90	19	2	19	2	y	0.92	12	1	12	1	n	ENSMUSG00000029471.14	Camkk2	chr5	protein_coding	calcium/calmodulin-dependent protein kinase kinase 2, beta
known_NIR_14145	chr5	122875596	122881933	-	122875596;122880291	122880163;122881933	ES	ENSMUST00000111668.8	known	0.08	2	23.5	2	26;21	y	0.11	2	16.0	2	21;11	y	0.20	7	27.5	7	27;28	y	0.15	5	27.5	5	36;19	y	0.20	8	33.0	8	31;35	y	0.52	8	7.5	8	9;6	y	0.09	3	32.0	3	30;34	y	0.13	2	13.5	2	17;10	y	0.17	4	19.5	4	28;11	y	0.22	7	25.0	7	24;26	y	0.16	4	21.5	4	19;24	y	0.10	2	18.5	2	19;18	y	ENSMUSG00000029471.14	Camkk2	chr5	protein_coding	calcium/calmodulin-dependent protein kinase kinase 2, beta
known_NIR_14146	chr5	122875596	122881933	-	122880291	122881933	3pMXE	ENSMUST00000199830.5	known	0.09	2	21	2	21	y	0.15	2	11	2	11	y	0.20	7	28	7	28	y	0.21	5	19	5	19	y	0.19	8	35	8	35	y	0.57	8	6	8	6	y	0.08	3	34	3	34	y	0.17	2	10	2	10	y	0.27	4	11	4	11	y	0.21	7	26	7	26	y	0.14	4	24	4	24	y	0.10	2	18	2	18	y	ENSMUSG00000029471.14	Camkk2	chr5	protein_coding	calcium/calmodulin-dependent protein kinase kinase 2, beta
known_NIR_14147	chr5	122897063	122901837	-	122897063	122917315	A5SS	ENSMUST00000199988.2	known	1.00	14	0	14	0	n	1.00	10	0	10	0	n	1.00	25	0	25	0	n	1.00	15	0	15	0	n	1.00	25	0	25	0	n	1.00	6	0	6	0	n	0.95	18	1	18	1	n	1.00	7	0	7	0	n	1.00	14	0	14	0	n	0.88	15	2	15	2	y	1.00	12	0	12	0	n	1.00	20	0	20	0	n	ENSMUSG00000029471.14	Camkk2	chr5	protein_coding	calcium/calmodulin-dependent protein kinase kinase 2, beta
known_NIR_14148	chr5	122897063	122917315	-	122897063;122902365	122901837;122917315	ES	ENSMUST00000111668.8	known	0.00	0	8.5	0	14;3	n	0.00	0	7.0	0	10;4	n	0.00	0	19.0	0	25;13	n	0.00	0	14.5	0	15;14	n	0.00	0	20.0	0	25;15	n	0.00	0	5.0	0	6;4	n	0.07	1	12.5	1	18;7	n	0.00	0	3.5	0	7;0	n	0.00	0	10.0	0	14;6	n	0.15	2	11.0	2	15;7	y	0.00	0	8.5	0	12;5	n	0.00	0	11.5	0	20;3	n	ENSMUSG00000029471.14	Camkk2	chr5	protein_coding	calcium/calmodulin-dependent protein kinase kinase 2, beta
known_NIR_14149	chr5	122902365;122908046	122907962;122917315	-	122902365	122917315	cassetteExon	ENSMUST00000111668.8	known	0.00	0.0	3	0;0	3	n	0.00	0.0	4	0;0	4	n	0.00	0.0	13	0;0	13	n	0.12	2.0	14	4;0	14	n	0.17	3.0	15	4;2	15	y	0.20	1.0	4	2;0	4	n	0.00	0.0	7	0;0	7	n	-	-	-	-	-	-	0.00	0.0	6	0;0	6	n	0.00	0.0	7	0;0	7	n	0.00	0.0	5	0;0	5	n	0.33	1.5	3	3;0	3	n	ENSMUSG00000029471.14	Camkk2	chr5	protein_coding	calcium/calmodulin-dependent protein kinase kinase 2, beta
known_NIR_14150	chr5	122926503	122929671	-	122926527	122929671	A3SS	ENSMUST00000086216.9	known	0.03	7	266	7	266	y	0.03	8	282	8	282	y	0.00	0	235	0	235	n	0.00	0	214	0	214	n	0.03	10	332	10	332	y	0.00	0	118	0	118	n	0.00	0	416	0	416	n	0.00	0	132	0	132	n	0.00	0	194	0	194	n	0.00	0	339	0	339	n	0.00	0	301	0	301	n	0.00	0	312	0	312	n	ENSMUSG00000029472.14	Anapc5	chr5	protein_coding	anaphase-promoting complex subunit 5
known_NIR_14151	chr5	122929798	122929890	-	122929818	122929890	A3SS	ENSMUST00000086216.9	known	0.10	22	208	22	208	y	0.06	14	211	14	211	y	0.06	10	162	10	162	y	0.17	34	169	34	169	y	0.13	38	245	38	245	y	0.12	17	123	17	123	y	0.08	27	300	27	300	y	0.07	10	136	10	136	y	0.08	17	186	17	186	y	0.09	28	294	28	294	y	0.11	34	263	34	263	y	0.12	31	231	31	231	y	ENSMUSG00000029472.14	Anapc5	chr5	protein_coding	anaphase-promoting complex subunit 5
known_NIR_14152	chr5	122929997	122932480	-	122929997	122931500	5pMXE	ENSMUST00000199130.2	known	0.03	7	199	7	199	y	0.01	2	218	2	218	y	0.00	1	241	1	241	n	0.01	1	174	1	174	n	0.01	3	313	3	313	y	0.00	0	137	0	137	n	0.01	2	349	2	349	y	0.01	2	144	2	144	y	0.00	0	174	0	174	n	0.01	3	264	3	264	y	0.04	7	190	7	190	y	0.01	2	227	2	227	y	ENSMUSG00000029472.14	Anapc5	chr5	protein_coding	anaphase-promoting complex subunit 5
known_NIR_14153	chr5	122929997	122932480	-	122929997;122931621	122931500;122932480	ES	ENSMUST00000086216.9	known	0.04	7	191.5	7	199;184	y	0.01	2	202.5	2	218;187	y	0.00	1	214.5	1	241;188	n	0.01	1	176.0	1	174;178	n	0.01	3	289.0	3	313;265	y	0.00	0	125.5	0	137;114	n	0.01	2	338.0	2	349;327	y	0.01	2	141.0	2	144;138	y	0.00	0	158.5	0	174;143	n	0.01	3	252.0	3	264;240	y	0.03	7	196.0	7	190;202	y	0.01	2	235.0	2	227;243	y	ENSMUSG00000029472.14	Anapc5	chr5	protein_coding	anaphase-promoting complex subunit 5
known_NIR_14154	chr5	122929997	122932480	-	122931621	122932480	3pMXE	ENSMUST00000196753.5	known	0.04	7	184	7	184	y	0.01	2	187	2	187	y	0.01	1	188	1	188	n	0.01	1	178	1	178	n	0.01	3	265	3	265	y	0.00	0	114	0	114	n	0.01	2	327	2	327	y	0.01	2	138	2	138	y	0.00	0	143	0	143	n	0.01	3	240	3	240	y	0.03	7	202	7	202	y	0.01	2	243	2	243	y	ENSMUSG00000029472.14	Anapc5	chr5	protein_coding	anaphase-promoting complex subunit 5
known_NIR_14155	chr5	122938656	122940193	-	122938695	122940193	A3SS	ENSMUST00000086216.9	known	0.51	69	65	69	65	y	0.41	46	67	46	67	y	0.28	50	126	50	126	y	0.57	63	48	63	48	y	0.38	73	117	73	117	y	0.39	39	60	39	60	y	0.41	81	116	81	116	y	0.45	46	57	46	57	y	0.52	44	41	44	41	y	0.45	81	98	81	98	y	0.43	65	87	65	87	y	0.48	84	91	84	91	y	ENSMUSG00000029472.14	Anapc5	chr5	protein_coding	anaphase-promoting complex subunit 5
known_NIR_14156	chr5	122938671	122940193	-	122938656	122940193	A3SS	ENSMUST00000196423.5	known	0.00	0	69	0	69	n	0.15	8	46	8	46	y	0.04	2	50	2	50	y	0.03	2	63	2	63	y	0.10	8	73	8	73	y	0.07	3	39	3	39	y	0.05	4	81	4	81	y	0.06	3	46	3	46	y	0.02	1	44	1	44	n	0.09	8	81	8	81	y	0.04	3	65	3	65	y	0.09	8	84	8	84	y	ENSMUSG00000029472.14	Anapc5	chr5	protein_coding	anaphase-promoting complex subunit 5
known_NIR_14157	chr5	122938671	122940193	-	122938695	122940193	A3SS	ENSMUST00000086216.9	known	0.00	0	65	0	65	n	0.11	8	67	8	67	y	0.02	2	126	2	126	y	0.04	2	48	2	48	y	0.06	8	117	8	117	y	0.05	3	60	3	60	y	0.03	4	116	4	116	y	0.05	3	57	3	57	y	0.02	1	41	1	41	n	0.08	8	98	8	98	y	0.03	3	87	3	87	y	0.08	8	91	8	91	y	ENSMUSG00000029472.14	Anapc5	chr5	protein_coding	anaphase-promoting complex subunit 5
known_NIR_14158	chr5	122956067	122956799	-	122956067	122956917	A5SS	ENSMUST00000086216.9	known	0.00	0	107	0	107	n	0.00	0	108	0	108	n	0.01	2	160	2	160	y	0.00	0	117	0	117	n	0.01	2	165	2	165	y	0.01	1	95	1	95	n	0.00	0	188	0	188	n	0.00	0	99	0	99	n	0.00	0	84	0	84	n	0.00	0	185	0	185	n	0.00	0	99	0	99	n	0.00	0	143	0	143	n	ENSMUSG00000029472.14	Anapc5	chr5	protein_coding	anaphase-promoting complex subunit 5
known_NIR_14159	chr5	123019121	123020027	-	123019121;123019813	123019700;123020027	ES	ENSMUST00000046073.16	known	0.00	0	7.5	0	5;10	n	0.00	0	8.5	0	9;8	n	0.00	0	13.5	0	14;13	n	0.15	2	11.5	2	13;10	y	0.07	1	13.0	1	14;12	n	0.00	0	9.0	0	7;11	n	0.00	0	12.5	0	14;11	n	0.00	0	6.5	0	7;6	n	0.00	0	5.5	0	2;9	n	0.08	1	11.0	1	14;8	n	0.00	0	6.0	0	5;7	n	0.00	0	12.0	0	12;12	n	ENSMUSG00000029475.18	Kdm2b	chr5	protein_coding	lysine (K)-specific demethylase 2B
known_NIR_14160	chr5	123026817	123038212	-	123026817	123059448	A5SS	ENSMUST00000046073.16	known	0.50	1	1	1	1	n	0.30	3	7	3	7	y	0.89	8	1	8	1	n	0.50	4	4	4	4	n	0.29	4	10	4	10	y	1.00	3	0	3	0	n	0.50	4	4	4	4	n	0.30	3	7	3	7	y	0.83	5	1	5	1	n	0.40	6	9	6	9	y	0.43	3	4	3	4	n	0.50	2	2	2	2	n	ENSMUSG00000029475.18	Kdm2b	chr5	protein_coding	lysine (K)-specific demethylase 2B
known_NIR_14161	chr5	123238016	123239674	+	123238016	123239688	A3SS	ENSMUST00000161660.8	known	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.22	2	7	2	7	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.25	2	6	2	6	n	0.21	5	19	5	19	y	ENSMUSG00000054434.15	Tmem120b	chr5	protein_coding	transmembrane protein 120B
known_NIR_14162	chr5	123272493	123276018	-	123272493;123272780	123272687;123276018	ES	ENSMUST00000159072.2	known	0.00	0	16.5	0	10;23	n	0.14	3	18.5	3	13;24	y	0.18	2	9.0	2	6;12	y	0.04	1	22.0	1	18;26	n	0.22	4	14.0	4	13;15	y	0.13	1	6.5	1	6;7	n	0.00	0	29.5	0	28;31	n	0.00	0	7.0	0	6;8	n	0.03	1	37.0	1	27;47	n	0.00	0	37.0	0	38;36	n	0.00	0	20.5	0	12;29	n	0.05	2	34.5	2	33;36	y	ENSMUSG00000090086.8	AI480526	chr5	lncRNA	expressed sequence AI480526
known_NIR_14163	chr5	123272493	123276018	-	123272955	123276018	3pMXE	ENSMUST00000160321.8	known	0.00	0	3	0	3	n	0.60	3	2	3	2	n	0.40	2	3	2	3	n	0.33	1	2	1	2	n	0.50	4	4	4	4	n	0.50	1	1	1	1	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.20	2	8	2	8	y	ENSMUSG00000090086.8	AI480526	chr5	lncRNA	expressed sequence AI480526
known_NIR_14164	chr5	123272493;123272955	123272687;123276018	-	123272493	123276018	cassetteExon	ENSMUST00000160227.8	known	1.00	6.5	0	10;3	0	n	0.71	7.5	3	13;2	3	y	0.69	4.5	2	6;3	2	y	0.91	10.0	1	18;2	1	n	0.68	8.5	4	13;4	4	y	0.78	3.5	1	6;1	1	n	1.00	20.0	0	28;12	0	n	1.00	5.0	0	6;4	0	n	0.94	15.5	1	27;4	1	n	1.00	20.0	0	38;2	0	n	1.00	9.0	0	12;6	0	n	0.91	20.5	2	33;8	2	y	ENSMUSG00000090086.8	AI480526	chr5	lncRNA	expressed sequence AI480526
known_NIR_14165	chr5	123272955	123276018	-	123272780	123276018	A3SS	ENSMUST00000159072.2	known	0.12	3	23	3	23	y	0.08	2	24	2	24	y	0.20	3	12	3	12	y	0.07	2	26	2	26	y	0.21	4	15	4	15	y	0.12	1	7	1	7	n	0.28	12	31	12	31	y	0.33	4	8	4	8	y	0.08	4	47	4	47	y	0.05	2	36	2	36	y	0.17	6	29	6	29	y	0.18	8	36	8	36	y	ENSMUSG00000090086.8	AI480526	chr5	lncRNA	expressed sequence AI480526
known_NIR_14166	chr5	123276129	123277932	-	123276129	123277030	5pMXE	ENSMUST00000160227.8	known	0.67	8	4	8	4	y	1.00	8	0	8	0	n	0.78	7	2	7	2	n	0.78	14	4	14	4	y	0.80	8	2	8	2	y	1.00	3	0	3	0	n	0.81	13	3	13	3	y	1.00	6	0	6	0	n	1.00	20	0	20	0	n	0.85	17	3	17	3	y	0.87	13	2	13	2	y	1.00	12	0	12	0	n	ENSMUSG00000090086.8	AI480526	chr5	lncRNA	expressed sequence AI480526
known_NIR_14167	chr5	123310349	123310798	-	123310349	123312414	A5SS	ENSMUST00000031398.14	known	0.00	0	6135	0	6135	n	0.00	0	5757	0	5757	n	0.00	0	286	0	286	n	0.00	0	5700	0	5700	n	0.00	0	5137	0	5137	n	0.00	0	648	0	648	n	0.00	0	5923	0	5923	n	0.00	0	1285	0	1285	n	0.00	0	5444	0	5444	n	0.00	3	7444	3	7444	y	0.00	2	6216	2	6216	y	0.00	0	7891	0	7891	n	ENSMUSG00000029445.14	Hpd	chr5	protein_coding	4-hydroxyphenylpyruvic acid dioxygenase
known_NIR_14168	chr5	123319986	123320087	-	123319986	123320609	A5SS	ENSMUST00000031398.14	known	0.00	0	3512	0	3512	n	0.00	5	2768	5	2768	y	0.00	0	195	0	195	n	0.00	2	4567	2	4567	y	0.00	0	3989	0	3989	n	0.00	1	434	1	434	n	0.00	3	3366	3	3366	y	0.00	0	1004	0	1004	n	0.00	3	3503	3	3503	y	0.00	3	4671	3	4671	y	0.00	1	3301	1	3301	n	0.00	0	4800	0	4800	n	ENSMUSG00000029445.14	Hpd	chr5	protein_coding	4-hydroxyphenylpyruvic acid dioxygenase
known_NIR_14169	chr5	123379996	123384257	+	123379996	123381367	3pMXE	ENSMUST00000133386.2	known	1.00	164	0	164	0	n	1.00	168	0	168	0	n	1.00	162	0	162	0	n	1.00	149	0	149	0	n	1.00	167	0	167	0	n	1.00	79	0	79	0	n	1.00	219	0	219	0	n	1.00	92	0	92	0	n	0.99	137	2	137	2	y	1.00	182	0	182	0	n	1.00	157	0	157	0	n	1.00	181	0	181	0	n	ENSMUSG00000029440.16	Psmd9	chr5	protein_coding	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9
known_NIR_14170	chr5	123379996	123384260	+	123379996	123384257	A3SS	ENSMUST00000100729.9	known	0.01	1	164	1	164	n	0.01	1	168	1	168	n	0.01	1	162	1	162	n	0.00	0	149	0	149	n	0.01	1	167	1	167	n	0.02	2	79	2	79	y	0.01	2	219	2	219	y	0.02	2	92	2	92	y	0.01	1	137	1	137	n	0.02	3	182	3	182	y	0.01	1	157	1	157	n	0.00	0	181	0	181	n	ENSMUSG00000029440.16	Psmd9	chr5	protein_coding	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9
known_NIR_14171	chr5	123379996	123386356	+	123379996;123384345	123384257;123386356	ES	ENSMUST00000100729.9	known	0.01	1	131.5	1	164;99	n	0.00	0	131.0	0	168;94	n	0.01	1	127.0	1	162;92	n	0.00	0	128.5	0	149;108	n	0.02	2	128.5	2	167;90	y	0.00	0	72.0	0	79;65	n	0.00	0	170.0	0	219;121	n	0.00	0	79.5	0	92;67	n	0.01	1	108.5	1	137;80	n	0.00	0	148.5	0	182;115	n	0.00	0	134.0	0	157;111	n	0.00	0	160.5	0	181;140	n	ENSMUSG00000029440.16	Psmd9	chr5	protein_coding	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9
known_NIR_14172	chr5	123654515	123655800	-	123650770	123655800	A3SS	ENSMUST00000125652.8	known	0.00	0	110	0	110	n	0.02	2	105	2	105	y	0.00	0	154	0	154	n	0.00	0	102	0	102	n	0.01	1	135	1	135	n	0.01	1	102	1	102	n	0.01	1	150	1	150	n	0.02	1	63	1	63	n	0.03	2	72	2	72	y	0.01	2	159	2	159	y	0.01	1	114	1	114	n	0.00	0	95	0	95	n	ENSMUSG00000029433.17	Diablo	chr5	protein_coding	diablo, IAP-binding mitochondrial protein
known_NIR_14173	chr5	123693073	123696677	-	123685191	123696677	A3SS	ENSMUST00000031388.13	known	0.08	3	35	3	35	y	0.08	3	36	3	36	y	0.06	4	62	4	62	y	0.02	1	64	1	64	n	0.00	0	57	0	57	n	0.03	1	35	1	35	n	0.00	0	53	0	53	n	0.04	2	52	2	52	y	0.00	0	33	0	33	n	0.05	4	74	4	74	y	0.02	1	46	1	46	n	0.00	0	56	0	56	n	ENSMUSG00000029434.13	Vps33a	chr5	protein_coding	VPS33A CORVET/HOPS core subunit
known_NIR_14174	chr5	123718187;123719660	123719655;123720783	-	123718187	123720783	cassetteExon	ENSMUST00000111564.8	known	0.00	0.0	57	0;0	57	n	0.00	0.0	60	0;0	60	n	0.00	0.0	106	0;0	106	n	0.00	0.0	73	0;0	73	n	0.00	0.0	76	0;0	76	n	0.00	0.0	58	0;0	58	n	0.06	7.5	122	6;9	122	y	0.00	0.0	32	0;0	32	n	0.00	0.0	47	0;0	47	n	0.00	0.0	82	0;0	82	n	0.00	0.0	51	0;0	51	n	0.00	0.0	85	0;0	85	n	ENSMUSG00000049550.18	Clip1	chr5	protein_coding	CAP-GLY domain containing linker protein 1
known_NIR_14175	chr5	123750001	123751131	-	123750001	123755399	A5SS	ENSMUST00000111564.8	known	0.02	1	53	1	53	n	0.00	0	35	0	35	n	0.00	0	128	0	128	n	0.00	0	69	0	69	n	0.01	1	101	1	101	n	0.00	0	80	0	80	n	0.00	0	113	0	113	n	0.02	1	52	1	52	n	0.00	0	57	0	57	n	0.01	1	80	1	80	n	0.03	2	63	2	63	y	0.01	1	88	1	88	n	ENSMUSG00000049550.18	Clip1	chr5	protein_coding	CAP-GLY domain containing linker protein 1
known_NIR_14176	chr5	123753398	123755399	-	123750001	123755399	A3SS	ENSMUST00000111564.8	known	0.04	2	53	2	53	y	0.00	0	35	0	35	n	0.00	0	128	0	128	n	0.00	0	69	0	69	n	0.01	1	101	1	101	n	0.00	0	80	0	80	n	0.01	1	113	1	113	n	0.04	2	52	2	52	y	0.00	0	57	0	57	n	0.00	0	80	0	80	n	0.02	1	63	1	63	n	0.00	0	88	0	88	n	ENSMUSG00000049550.18	Clip1	chr5	protein_coding	CAP-GLY domain containing linker protein 1
known_NIR_14177	chr5	123761333	123768516	-	123761333	123765357	A5SS&ES	ENSMUST00000111566.9	known	0.00	0	32	0	32	n	0.00	0	24	0	24	n	0.00	0	76	0	76	n	0.00	0	42	0	42	n	0.00	0	46	0	46	n	0.00	0	37	0	37	n	0.00	0	75	0	75	n	0.05	2	37	2	37	y	0.00	0	40	0	40	n	0.00	0	40	0	40	n	0.00	0	26	0	26	n	0.00	0	39	0	39	n	ENSMUSG00000049550.18	Clip1	chr5	protein_coding	CAP-GLY domain containing linker protein 1
known_NIR_14178	chr5	123761333	123768516	-	123761333;123765473	123765357;123768516	ES	ENSMUST00000111564.8	known	0.00	0	20.5	0	32;9	n	0.00	0	17.5	0	24;11	n	0.00	0	58.5	0	76;41	n	0.00	0	32.5	0	42;23	n	0.00	0	36.5	0	46;27	n	0.00	0	33.0	0	37;29	n	0.00	0	59.0	0	75;43	n	0.07	2	28.0	2	37;19	y	0.00	0	32.5	0	40;25	n	0.00	0	33.5	0	40;27	n	0.00	0	22.5	0	26;19	n	0.00	0	29.5	0	39;20	n	ENSMUSG00000049550.18	Clip1	chr5	protein_coding	CAP-GLY domain containing linker protein 1
known_NIR_14179	chr5	123765473	123768288	-	123765473	123768516	A5SS	ENSMUST00000111564.8	known	0.70	21	9	21	9	y	0.50	11	11	11	11	y	0.43	31	41	31	41	y	0.42	17	23	17	23	y	0.36	15	27	15	27	y	0.40	19	29	19	29	y	0.48	40	43	40	43	y	0.41	13	19	13	19	y	0.39	16	25	16	25	y	0.44	21	27	21	27	y	0.44	15	19	15	19	y	0.53	23	20	23	20	y	ENSMUSG00000049550.18	Clip1	chr5	protein_coding	CAP-GLY domain containing linker protein 1
known_NIR_14180	chr5	123769232;123773341	123773237;123778557	-	123769232	123778557	cassetteExon	ENSMUST00000111564.8	known	0.16	3.0	16	2;4	16	y	0.26	2.5	7	1;4	7	n	0.09	4.0	41	3;5	41	y	0.22	5.0	18	6;4	18	y	0.13	3.5	23	3;4	23	y	0.11	3.0	25	4;2	25	y	0.18	5.0	23	8;2	23	y	0.16	3.5	19	5;2	19	y	0.14	3.0	19	1;5	19	n	0.12	4.5	33	5;4	33	y	0.18	3.5	16	5;2	16	y	0.16	5.0	26	5;5	26	y	ENSMUSG00000049550.18	Clip1	chr5	protein_coding	CAP-GLY domain containing linker protein 1
known_NIR_14181	chr5	123773341;123777051	123777019;123778557	-	123773341	123778557	cassetteExon	ENSMUST00000137363.8	known	0.00	0.0	4	0;0	4	n	0.00	0.0	4	0;0	4	n	0.17	1.0	5	1;1	5	n	0.00	0.0	4	0;0	4	n	0.38	2.5	4	3;2	4	n	0.43	1.5	2	1;2	2	n	0.86	12.5	2	6;19	2	y	0.20	0.5	2	0;1	2	n	0.17	1.0	5	1;1	5	n	0.00	0.0	4	0;0	4	n	0.00	0.0	2	0;0	2	n	0.38	3.0	5	2;4	5	y	ENSMUSG00000049550.18	Clip1	chr5	protein_coding	CAP-GLY domain containing linker protein 1
known_NIR_14182	chr5	123777051	123778557	-	123769232	123778557	A3SS	ENSMUST00000111564.8	known	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.02	1	41	1	41	n	0.00	0	18	0	18	n	0.08	2	23	2	23	y	0.07	2	25	2	25	y	0.45	19	23	19	23	y	0.05	1	19	1	19	n	0.05	1	19	1	19	n	0.00	0	33	0	33	n	0.00	0	16	0	16	n	0.13	4	26	4	26	y	ENSMUSG00000049550.18	Clip1	chr5	protein_coding	CAP-GLY domain containing linker protein 1
known_NIR_14183	chr5	123846695;123847548	123847258;123852129	-	123846695	123852129	cassetteExon	ENSMUST00000198826.5	known	0.91	19.5	2	21;18	2	y	0.87	13.5	2	16;11	2	y	1.00	26.5	0	32;21	0	n	1.00	23.5	0	24;23	0	n	0.94	47.0	3	54;40	3	y	0.95	18.5	1	22;15	1	n	0.90	27.5	3	35;20	3	y	0.92	24.0	2	26;22	2	y	1.00	19.0	0	26;12	0	n	0.93	27.0	2	35;19	2	y	1.00	23.0	0	27;19	0	n	0.90	36.0	4	42;30	4	y	ENSMUSG00000029427.12	Zcchc8	chr5	protein_coding	zinc finger, CCHC domain containing 8
known_NIR_14184	chr5	123871698;123873959	123873885;123874622	-	123871698	123874622	cassetteExon	ENSMUST00000050827.14	known	0.08	8.0	92	10;6	92	y	0.11	6.0	51	7;5	51	y	0.17	9.0	45	6;12	45	y	0.12	6.5	48	7;6	48	y	0.05	6.0	116	0;12	116	n	0.14	4.5	28	5;4	28	y	0.10	10.0	88	10;10	88	y	0.16	7.0	38	6;8	38	y	0.07	4.0	50	3;5	50	y	0.06	5.5	86	3;8	86	y	0.13	6.5	43	4;9	43	y	0.11	6.5	54	7;6	54	y	ENSMUSG00000029422.16	Rsrc2	chr5	protein_coding	arginine/serine-rich coiled-coil 2
known_NIR_14185	chr5	123878925	123880842	-	123878947	123880842	A3SS	ENSMUST00000050827.14	known	0.50	7	7	7	7	y	0.86	6	1	6	1	n	0.25	2	6	2	6	n	0.44	4	5	4	5	n	0.71	5	2	5	2	n	0.00	0	1	0	1	n	0.73	8	3	8	3	y	0.75	3	1	3	1	n	0.67	6	3	6	3	n	0.38	6	10	6	10	y	0.71	5	2	5	2	n	0.40	8	12	8	12	y	ENSMUSG00000029422.16	Rsrc2	chr5	protein_coding	arginine/serine-rich coiled-coil 2
known_NIR_14186	chr5	123878925	123881701	-	123878925	123880842	5pMXE	ENSMUST00000182948.8	known	0.92	76	7	76	7	y	0.88	43	6	43	6	y	0.96	53	2	53	2	y	0.94	65	4	65	4	y	0.90	47	5	47	5	y	1.00	38	0	38	0	n	0.89	63	8	63	8	y	0.91	32	3	32	3	y	0.87	39	6	39	6	y	0.92	73	6	73	6	y	0.88	35	5	35	5	y	0.90	69	8	69	8	y	ENSMUSG00000029422.16	Rsrc2	chr5	protein_coding	arginine/serine-rich coiled-coil 2
known_NIR_14187	chr5	123878925	123881701	-	123880919	123881701	A3SS&ES	ENSMUST00000050827.14	known	0.89	76	9	76	9	y	0.83	43	9	43	9	y	0.87	53	8	53	8	y	0.93	65	5	65	5	y	0.84	47	9	47	9	y	0.88	38	5	38	5	y	0.83	63	13	63	13	y	0.74	32	11	32	11	y	0.89	39	5	39	5	y	0.88	73	10	73	10	y	0.85	35	6	35	6	y	0.82	69	15	69	15	y	ENSMUSG00000029422.16	Rsrc2	chr5	protein_coding	arginine/serine-rich coiled-coil 2
known_NIR_14188	chr5	123878925;123880919	123880842;123881701	-	123878925	123881701	cassetteExon	ENSMUST00000182955.8	known	0.10	8.0	76	7;9	76	y	0.15	7.5	43	6;9	43	y	0.09	5.0	53	2;8	53	y	0.06	4.5	65	4;5	65	y	0.13	7.0	47	5;9	47	y	0.06	2.5	38	0;5	38	n	0.14	10.5	63	8;13	63	y	0.18	7.0	32	3;11	32	y	0.12	5.5	39	6;5	39	y	0.10	8.0	73	6;10	73	y	0.14	5.5	35	5;6	35	y	0.14	11.5	69	8;15	69	y	ENSMUSG00000029422.16	Rsrc2	chr5	protein_coding	arginine/serine-rich coiled-coil 2
known_NIR_14189	chr5	123883174	123887352	-	123883174	123883560	5pMXE	ENSMUST00000182744.8	known	0.98	51	1	51	1	n	0.98	43	1	43	1	n	0.92	35	3	35	3	y	0.94	44	3	44	3	y	0.92	56	5	56	5	y	0.89	25	3	25	3	y	0.94	60	4	60	4	y	0.94	48	3	48	3	y	0.93	43	3	43	3	y	0.92	48	4	48	4	y	1.00	39	0	39	0	n	0.96	48	2	48	2	y	ENSMUSG00000029422.16	Rsrc2	chr5	protein_coding	arginine/serine-rich coiled-coil 2
known_NIR_14190	chr5	123883174	123887352	-	123883174;123883652	123883560;123887352	ES	ENSMUST00000050827.14	known	0.98	51	1.0	51	1;1	n	0.92	43	3.5	43	1;6	n	0.95	35	2.0	35	3;1	n	0.95	44	2.5	44	3;2	y	0.94	56	3.5	56	5;2	y	0.88	25	3.5	25	3;4	y	0.94	60	3.5	60	4;3	y	0.97	48	1.5	48	3;0	n	0.95	43	2.5	43	3;2	y	0.93	48	3.5	48	4;3	y	0.97	39	1.0	39	0;2	n	0.96	48	2.0	48	2;2	y	ENSMUSG00000029422.16	Rsrc2	chr5	protein_coding	arginine/serine-rich coiled-coil 2
known_NIR_14191	chr5	123884933	123887352	-	123883174	123887352	A3SS	ENSMUST00000057795.12	known	0.00	0	51	0	51	n	0.00	0	43	0	43	n	0.00	0	35	0	35	n	0.02	1	44	1	44	n	0.05	3	56	3	56	y	0.00	0	25	0	25	n	0.00	0	60	0	60	n	0.00	0	48	0	48	n	0.00	0	43	0	43	n	0.00	0	48	0	48	n	0.00	0	39	0	39	n	0.04	2	48	2	48	y	ENSMUSG00000029422.16	Rsrc2	chr5	protein_coding	arginine/serine-rich coiled-coil 2
known_NIR_14192	chr5	124045765	124046163	+	124045429	124046163	A5SS	ENSMUST00000023869.15	known	0.00	0	138	0	138	n	0.00	0	152	0	152	n	0.02	3	196	3	196	y	0.00	0	134	0	134	n	0.00	0	185	0	185	n	0.01	1	105	1	105	n	0.01	1	147	1	147	n	0.01	1	100	1	100	n	0.00	0	105	0	105	n	0.01	2	197	2	197	y	0.01	1	139	1	139	n	0.00	0	196	0	196	n	ENSMUSG00000023106.16	Denr	chr5	protein_coding	density-regulated protein
known_NIR_14193	chr5	124046277	124046447	+	124046277	124053254	A3SS	ENSMUST00000023869.15	known	0.01	1	112	1	112	n	0.03	5	159	5	159	y	0.00	1	233	1	233	n	0.02	2	128	2	128	y	0.00	0	179	0	179	n	0.03	3	106	3	106	y	0.02	4	182	4	182	y	0.00	0	117	0	117	n	0.00	0	124	0	124	n	0.03	5	193	5	193	y	0.06	10	148	10	148	y	0.02	3	182	3	182	y	ENSMUSG00000023106.16	Denr	chr5	protein_coding	density-regulated protein
known_NIR_14194	chr5	124251591	124252451	+	124251591	124252128	A3SS	ENSMUST00000130140.8	known	0.18	17	79	17	79	y	0.25	25	74	25	74	y	0.28	29	74	29	74	y	0.16	15	77	15	77	y	0.25	29	85	29	85	y	0.18	9	41	9	41	y	0.16	18	98	18	98	y	0.19	10	43	10	43	y	0.11	8	64	8	64	y	0.18	25	114	25	114	y	0.25	26	80	26	80	y	0.15	19	110	19	110	y	ENSMUSG00000023707.14	Ogfod2	chr5	protein_coding	2-oxoglutarate and iron-dependent oxygenase domain containing 2
known_NIR_14195	chr5	124251591	124252451	+	124251591;124252255	124252128;124252451	ES	ENSMUST00000024470.13	known	0.19	17	71.5	17	79;64	y	0.28	25	63.0	25	74;52	y	0.33	29	59.5	29	74;45	y	0.18	15	66.5	15	77;56	y	0.27	29	79.0	29	85;73	y	0.21	9	33.0	9	41;25	y	0.18	18	79.5	18	98;61	y	0.21	10	38.5	10	43;34	y	0.12	8	56.0	8	64;48	y	0.21	25	93.5	25	114;73	y	0.25	26	78.5	26	80;77	y	0.16	19	96.5	19	110;83	y	ENSMUSG00000023707.14	Ogfod2	chr5	protein_coding	2-oxoglutarate and iron-dependent oxygenase domain containing 2
known_NIR_14196	chr5	124251591	124252470	+	124251591	124252128	A3SS&ES	ENSMUST00000024470.13	known	0.00	0	79	0	79	n	0.04	3	74	3	74	y	0.03	2	74	2	74	y	0.04	3	77	3	77	y	0.03	3	85	3	85	y	0.02	1	41	1	41	n	0.02	2	98	2	98	y	0.00	0	43	0	43	n	0.02	1	64	1	64	n	0.00	0	114	0	114	n	0.01	1	80	1	80	n	0.02	2	110	2	110	y	ENSMUSG00000023707.14	Ogfod2	chr5	protein_coding	2-oxoglutarate and iron-dependent oxygenase domain containing 2
known_NIR_14197	chr5	124251591	124252470	+	124251591	124252451	A3SS	ENSMUST00000196627.5	known	0.00	0	17	0	17	n	0.11	3	25	3	25	y	0.06	2	29	2	29	y	0.17	3	15	3	15	y	0.09	3	29	3	29	y	0.10	1	9	1	9	n	0.10	2	18	2	18	y	0.00	0	10	0	10	n	0.11	1	8	1	8	n	0.00	0	25	0	25	n	0.04	1	26	1	26	n	0.10	2	19	2	19	y	ENSMUSG00000023707.14	Ogfod2	chr5	protein_coding	2-oxoglutarate and iron-dependent oxygenase domain containing 2
known_NIR_14198	chr5	124251591	124252542	+	124251591	124252128	A3SS&ES	ENSMUST00000024470.13	known	0.08	7	79	7	79	y	0.04	3	74	3	74	y	0.04	3	74	3	74	y	0.04	3	77	3	77	y	0.08	7	85	7	85	y	0.00	0	41	0	41	n	0.06	6	98	6	98	y	0.07	3	43	3	43	y	0.03	2	64	2	64	y	0.02	2	114	2	114	y	0.08	7	80	7	80	y	0.03	3	110	3	110	y	ENSMUSG00000023707.14	Ogfod2	chr5	protein_coding	2-oxoglutarate and iron-dependent oxygenase domain containing 2
known_NIR_14199	chr5	124251591	124252542	+	124251591	124252451	A3SS	ENSMUST00000196627.5	known	0.29	7	17	7	17	y	0.11	3	25	3	25	y	0.09	3	29	3	29	y	0.17	3	15	3	15	y	0.19	7	29	7	29	y	0.00	0	9	0	9	n	0.25	6	18	6	18	y	0.23	3	10	3	10	y	0.20	2	8	2	8	y	0.07	2	25	2	25	y	0.21	7	26	7	26	y	0.14	3	19	3	19	y	ENSMUSG00000023707.14	Ogfod2	chr5	protein_coding	2-oxoglutarate and iron-dependent oxygenase domain containing 2
known_NIR_14200	chr5	124251591	124252542	+	124251591	124252470	3pMXE	ENSMUST00000199457.5	known	1.00	7	0	7	0	n	0.50	3	3	3	3	n	0.60	3	2	3	2	n	0.50	3	3	3	3	n	0.70	7	3	7	3	y	0.00	0	1	0	1	n	0.75	6	2	6	2	n	1.00	3	0	3	0	n	0.67	2	1	2	1	n	1.00	2	0	2	0	n	0.88	7	1	7	1	n	0.60	3	2	3	2	n	ENSMUSG00000023707.14	Ogfod2	chr5	protein_coding	2-oxoglutarate and iron-dependent oxygenase domain containing 2
known_NIR_14201	chr5	124251591	124252542	+	124251591;124252255	124252128;124252542	ES	ENSMUST00000119269.6	known	0.13	7	45.5	7	79;12	y	0.06	3	44.0	3	74;14	y	0.06	3	46.0	3	74;18	y	0.07	3	42.5	3	77;8	y	0.12	7	49.0	7	85;13	y	0.00	0	21.0	0	41;1	n	0.10	6	52.0	6	98;6	y	0.11	3	25.5	3	43;8	y	0.05	2	36.5	2	64;9	y	0.03	2	64.0	2	114;14	y	0.14	7	44.5	7	80;9	y	0.05	3	59.0	3	110;8	y	ENSMUSG00000023707.14	Ogfod2	chr5	protein_coding	2-oxoglutarate and iron-dependent oxygenase domain containing 2
known_NIR_14202	chr5	124252255	124252542	+	124252255	124252451	A3SS	ENSMUST00000024470.13	known	0.16	12	64	12	64	y	0.21	14	52	14	52	y	0.29	18	45	18	45	y	0.12	8	56	8	56	y	0.15	13	73	13	73	y	0.04	1	25	1	25	n	0.09	6	61	6	61	y	0.19	8	34	8	34	y	0.16	9	48	9	48	y	0.16	14	73	14	73	y	0.10	9	77	9	77	y	0.09	8	83	8	83	y	ENSMUSG00000023707.14	Ogfod2	chr5	protein_coding	2-oxoglutarate and iron-dependent oxygenase domain containing 2
known_NIR_14203	chr5	124254587	124254978	+	124254674	124254978	A5SS	ENSMUST00000149835.2	known	0.01	1	131	1	131	n	0.01	2	158	2	158	y	0.01	2	146	2	146	y	0.03	4	116	4	116	y	0.02	4	172	4	172	y	0.04	3	71	3	71	y	0.03	4	152	4	152	y	0.00	0	77	0	77	n	0.01	1	137	1	137	n	0.03	5	167	5	167	y	0.01	2	153	2	153	y	0.01	1	135	1	135	n	ENSMUSG00000029404.16	Arl6ip4	chr5	protein_coding	ADP-ribosylation factor-like 6 interacting protein 4
known_NIR_14204	chr5	124262150;124263022	124262861;124263362	-	124262150	124263362	cassetteExon	ENSMUST00000086123.11	known	0.86	6.0	1	7;5	1	n	0.61	17.0	11	20;14	11	y	0.85	16.5	3	15;18	3	y	0.39	11.5	18	11;12	18	y	0.51	17.5	17	21;14	17	y	0.91	10.5	1	11;10	1	n	0.65	17.0	9	21;13	9	y	0.58	7.0	5	7;7	5	y	0.47	9.0	10	10;8	10	y	0.38	14.0	23	17;11	23	y	0.57	6.5	5	8;5	5	y	0.38	5.5	9	3;8	9	y	ENSMUSG00000029406.16	Pitpnm2	chr5	protein_coding	phosphatidylinositol transfer protein, membrane-associated 2
known_NIR_14205	chr5	124263526	124265240	-	124263526	124264418	5pMXE	ENSMUST00000159010.2	known	0.96	22	1	22	1	n	0.87	13	2	13	2	y	0.64	9	5	9	5	y	0.85	22	4	22	4	y	0.89	34	4	34	4	y	1.00	9	0	9	0	n	0.80	24	6	24	6	y	0.76	16	5	16	5	y	0.79	11	3	11	3	y	0.73	33	12	33	12	y	0.95	18	1	18	1	n	0.65	17	9	17	9	y	ENSMUSG00000029406.16	Pitpnm2	chr5	protein_coding	phosphatidylinositol transfer protein, membrane-associated 2
known_NIR_14206	chr5	124263526;124264567	124264418;124265240	-	124263526	124265240	cassetteExon	ENSMUST00000086123.11	known	0.06	1.5	22	1;2	22	n	0.13	2.0	13	2;2	13	y	0.28	3.5	9	5;2	9	y	0.19	5.0	22	4;6	22	y	0.15	6.0	34	4;8	34	y	0.14	1.5	9	0;3	9	n	0.14	4.0	24	6;2	24	y	0.20	4.0	16	5;3	16	y	0.15	2.0	11	3;1	11	n	0.17	7.0	33	12;2	33	y	0.08	1.5	18	1;2	18	n	0.26	6.0	17	9;3	17	y	ENSMUSG00000029406.16	Pitpnm2	chr5	protein_coding	phosphatidylinositol transfer protein, membrane-associated 2
known_NIR_14207	chr5	124271038	124271231	-	124269405	124271231	A3SS	ENSMUST00000086123.11	known	0.31	8	18	8	18	y	0.42	8	11	8	11	y	0.37	10	17	10	17	y	0.04	1	23	1	23	n	0.20	10	40	10	40	y	0.23	3	10	3	10	y	0.06	2	32	2	32	y	0.19	3	13	3	13	y	0.05	1	19	1	19	n	0.12	5	37	5	37	y	0.25	4	12	4	12	y	0.18	4	18	4	18	y	ENSMUSG00000029406.16	Pitpnm2	chr5	protein_coding	phosphatidylinositol transfer protein, membrane-associated 2
known_NIR_14208	chr5	124488235	124489204	-	124488235	124492380	A5SS	ENSMUST00000031341.11	known	0.04	3	78	3	78	y	0.02	2	93	2	93	y	0.01	1	130	1	130	n	0.01	1	87	1	87	n	0.01	1	108	1	108	n	0.02	2	86	2	86	y	0.02	2	111	2	111	y	0.02	1	58	1	58	n	0.04	2	53	2	53	y	0.02	2	90	2	90	y	0.00	0	78	0	78	n	0.04	3	80	3	80	y	ENSMUSG00000029394.12	Cdk2ap1	chr5	protein_coding	CDK2 (cyclin-dependent kinase 2)-associated protein 1
known_NIR_14209	chr5	124488235	124490263	-	124488235	124492380	A5SS	ENSMUST00000031341.11	known	0.00	0	78	0	78	n	0.00	0	93	0	93	n	0.00	0	130	0	130	n	0.03	3	87	3	87	y	0.00	0	108	0	108	n	0.00	0	86	0	86	n	0.00	0	111	0	111	n	0.00	0	58	0	58	n	0.00	0	53	0	53	n	0.00	0	90	0	90	n	0.00	0	78	0	78	n	0.00	0	80	0	80	n	ENSMUSG00000029394.12	Cdk2ap1	chr5	protein_coding	CDK2 (cyclin-dependent kinase 2)-associated protein 1
known_NIR_14210	chr5	124548442	124552462	-	124548442;124551352	124551248;124552462	ES	ENSMUST00000168651.6	known	0.80	4	1.0	4	0;2	n	1.00	4	0.0	4	0;0	n	0.53	4	3.5	4	1;6	n	0.27	2	5.5	2	0;11	n	0.43	3	4.0	3	2;6	y	0.62	4	2.5	4	2;3	n	0.70	8	3.5	8	0;7	n	0.44	2	2.5	2	2;3	n	0.57	4	3.0	4	1;5	n	0.67	6	3.0	6	0;6	n	0.00	0	2.0	0	1;3	n	0.56	7	5.5	7	1;10	n	ENSMUSG00000038095.16	Sbno1	chr5	protein_coding	strawberry notch 1
known_NIR_14211	chr5	124548442	124552462	-	124551352	124552462	A3SS&ES	ENSMUST00000065263.12	known	0.67	4	2	4	2	n	1.00	4	0	4	0	n	0.40	4	6	4	6	y	0.15	2	11	2	11	y	0.33	3	6	3	6	n	0.57	4	3	4	3	n	0.53	8	7	8	7	y	0.40	2	3	2	3	n	0.44	4	5	4	5	n	0.50	6	6	6	6	y	0.00	0	3	0	3	n	0.41	7	10	7	10	y	ENSMUSG00000038095.16	Sbno1	chr5	protein_coding	strawberry notch 1
known_NIR_14212	chr5	124548445	124552462	-	124548442	124552462	A3SS	ENSMUST00000200474.5	known	0.43	3	4	3	4	n	0.64	7	4	7	4	y	0.75	12	4	12	4	y	0.83	10	2	10	2	y	0.79	11	3	11	3	y	0.50	4	4	4	4	n	0.64	14	8	14	8	y	0.85	11	2	11	2	y	0.73	11	4	11	4	y	0.71	15	6	15	6	y	1.00	5	0	5	0	n	0.65	13	7	13	7	y	ENSMUSG00000038095.16	Sbno1	chr5	protein_coding	strawberry notch 1
known_NIR_14213	chr5	124548445	124552462	-	124548445;124551352	124551248;124552462	ES	ENSMUST00000065263.12	known	0.67	3	1.5	3	1;2	n	0.93	7	0.5	7	1;0	n	0.67	12	6.0	12	6;6	y	0.51	10	9.5	10	8;11	y	0.73	11	4.0	11	2;6	y	0.62	4	2.5	4	2;3	n	0.64	14	8.0	14	9;7	y	0.81	11	2.5	11	2;3	y	0.73	11	4.0	11	3;5	y	0.70	15	6.5	15	7;6	y	0.59	5	3.5	5	4;3	y	0.60	13	8.5	13	7;10	y	ENSMUSG00000038095.16	Sbno1	chr5	protein_coding	strawberry notch 1
known_NIR_14214	chr5	124548445	124552462	-	124551352	124552462	A3SS&ES	ENSMUST00000168651.6	known	0.60	3	2	3	2	n	1.00	7	0	7	0	n	0.67	12	6	12	6	y	0.48	10	11	10	11	y	0.65	11	6	11	6	y	0.57	4	3	4	3	n	0.67	14	7	14	7	y	0.79	11	3	11	3	y	0.69	11	5	11	5	y	0.71	15	6	15	6	y	0.62	5	3	5	3	n	0.57	13	10	13	10	y	ENSMUSG00000038095.16	Sbno1	chr5	protein_coding	strawberry notch 1
known_NIR_14215	chr5	124552590	124563510	-	124552590	124557874	5pMXE	ENSMUST00000197777.2	known	1.00	4	0	4	0	n	1.00	4	0	4	0	n	0.92	11	1	11	1	n	1.00	10	0	10	0	n	1.00	14	0	14	0	n	0.91	10	1	10	1	n	1.00	11	0	11	0	n	0.86	12	2	12	2	y	1.00	9	0	9	0	n	0.94	17	1	17	1	n	1.00	8	0	8	0	n	1.00	13	0	13	0	n	ENSMUSG00000038095.16	Sbno1	chr5	protein_coding	strawberry notch 1
known_NIR_14216	chr5	124552590	124563510	-	124552590	124563910	A5SS	ENSMUST00000065263.12	known	0.80	4	1	4	1	n	1.00	4	0	4	0	n	0.79	11	3	11	3	y	0.91	10	1	10	1	n	1.00	14	0	14	0	n	0.91	10	1	10	1	n	0.92	11	1	11	1	n	1.00	12	0	12	0	n	0.82	9	2	9	2	y	1.00	17	0	17	0	n	1.00	8	0	8	0	n	1.00	13	0	13	0	n	ENSMUSG00000038095.16	Sbno1	chr5	protein_coding	strawberry notch 1
known_NIR_14217	chr5	124583791	124585277	+	124584147	124585277	A5SS&ES	ENSMUST00000059580.11	known	0.26	5	14	5	14	y	0.77	17	5	17	5	y	0.68	19	9	19	9	y	0.69	20	9	20	9	y	0.67	20	10	20	10	y	0.69	9	4	9	4	y	0.71	17	7	17	7	y	0.88	14	2	14	2	y	0.68	17	8	17	8	y	0.48	10	11	10	11	y	0.68	15	7	15	7	y	0.56	22	17	22	17	y	ENSMUSG00000049327.18	Kmt5a	chr5	protein_coding	lysine methyltransferase 5A
known_NIR_14218	chr5	124583791;124584147	124584032;124585277	+	124583791	124585277	cassetteExon	ENSMUST00000100709.7	known	0.58	7.0	5	0;14	5	n	0.19	4.0	17	3;5	17	y	0.25	6.5	19	4;9	19	y	0.27	7.5	20	6;9	20	y	0.23	6.0	20	2;10	20	y	0.18	2.0	9	0;4	9	n	0.17	3.5	17	0;7	17	n	0.07	1.0	14	0;2	14	n	0.21	4.5	17	1;8	17	n	0.35	5.5	10	0;11	10	n	0.23	4.5	15	2;7	15	y	0.31	10.0	22	3;17	22	y	ENSMUSG00000049327.18	Kmt5a	chr5	protein_coding	lysine methyltransferase 5A
known_NIR_14219	chr5	124584972	124585277	+	124583791	124585277	A5SS	ENSMUST00000100709.7	known	0.00	0	5	0	5	n	0.00	0	17	0	17	n	0.05	1	19	1	19	n	0.00	0	20	0	20	n	0.00	0	20	0	20	n	0.18	2	9	2	9	y	0.00	0	17	0	17	n	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.17	2	10	2	10	y	0.00	0	15	0	15	n	0.04	1	22	1	22	n	ENSMUSG00000049327.18	Kmt5a	chr5	protein_coding	lysine methyltransferase 5A
known_NIR_14220	chr5	124584972	124585277	+	124584147	124585277	A5SS	ENSMUST00000059580.11	known	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.10	1	9	1	9	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.33	2	4	2	4	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.15	2	11	2	11	y	0.00	0	7	0	7	n	0.06	1	17	1	17	n	ENSMUSG00000049327.18	Kmt5a	chr5	protein_coding	lysine methyltransferase 5A
known_NIR_14221	chr5	124588395	124588724	+	124585433	124588724	A5SS	ENSMUST00000059580.11	known	0.04	3	64	3	64	y	0.00	0	39	0	39	n	0.00	0	62	0	62	n	0.01	1	80	1	80	n	0.00	0	86	0	86	n	0.00	0	31	0	31	n	0.04	3	72	3	72	y	0.00	0	41	0	41	n	0.03	2	78	2	78	y	0.00	0	88	0	88	n	0.00	0	76	0	76	n	0.02	2	98	2	98	y	ENSMUSG00000049327.18	Kmt5a	chr5	protein_coding	lysine methyltransferase 5A
known_NIR_14222	chr5	124621716	124628186	+	124621309	124628186	A5SS	ENSMUST00000031349.9	known	0.38	6	10	6	10	y	0.36	9	16	9	16	y	0.19	4	17	4	17	y	0.11	2	16	2	16	y	0.33	9	18	9	18	y	0.52	11	10	11	10	y	0.29	4	10	4	10	y	0.46	6	7	6	7	y	0.31	8	18	8	18	y	0.50	9	9	9	9	y	0.44	7	9	7	9	y	0.32	7	15	7	15	y	ENSMUSG00000029402.9	Snrnp35	chr5	protein_coding	small nuclear ribonucleoprotein 35 (U11/U12)
known_NIR_14223	chr5	124631907;124633985	124633962;124639903	-	124631907	124639903	cassetteExon	ENSMUST00000062153.12	known	0.00	0.0	7	0;0	7	n	0.00	0.0	4	0;0	4	n	0.00	0.0	16	0;0	16	n	0.00	0.0	2	0;0	2	n	0.00	0.0	8	0;0	8	n	0.00	0.0	6	0;0	6	n	0.85	34.5	6	42;27	6	y	0.00	0.0	5	0;0	5	n	0.00	0.0	2	0;0	2	n	0.00	0.0	4	0;0	4	n	0.00	0.0	5	0;0	5	n	0.00	0.0	14	0;0	14	n	ENSMUSG00000029392.13	Rilpl1	chr5	protein_coding	Rab interacting lysosomal protein-like 1
known_NIR_14224	chr5	124631907;124634333	124633962;124639903	-	124631907	124639903	cassetteExon	ENSMUST00000062153.12	known	0.00	0.0	7	0;0	7	n	0.00	0.0	4	0;0	4	n	0.00	0.0	16	0;0	16	n	0.00	0.0	2	0;0	2	n	0.00	0.0	8	0;0	8	n	0.00	0.0	6	0;0	6	n	0.82	26.5	6	42;11	6	y	0.00	0.0	5	0;0	5	n	0.00	0.0	2	0;0	2	n	0.00	0.0	4	0;0	4	n	0.00	0.0	5	0;0	5	n	0.00	0.0	14	0;0	14	n	ENSMUSG00000029392.13	Rilpl1	chr5	protein_coding	Rab interacting lysosomal protein-like 1
known_NIR_14225	chr5	124631907;124634333	124634246;124639903	-	124631907	124639903	cassetteExon	ENSMUST00000062153.12	known	0.00	0.0	7	0;0	7	n	0.00	0.0	4	0;0	4	n	0.00	0.0	16	0;0	16	n	0.00	0.0	2	0;0	2	n	0.00	0.0	8	0;0	8	n	0.00	0.0	6	0;0	6	n	0.61	9.5	6	8;11	6	y	0.00	0.0	5	0;0	5	n	0.00	0.0	2	0;0	2	n	0.00	0.0	4	0;0	4	n	0.00	0.0	5	0;0	5	n	0.00	0.0	14	0;0	14	n	ENSMUSG00000029392.13	Rilpl1	chr5	protein_coding	Rab interacting lysosomal protein-like 1
known_NIR_14226	chr5	124631907;124634333	124634246;124639903	-	124631907;124633985	124633962;124639903	MXE	ENSMUST00000199766.5	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.22	9.5	34.5	8;11	42;27	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029392.13	Rilpl1	chr5	protein_coding	Rab interacting lysosomal protein-like 1
known_NIR_14227	chr5	124679495	124681035	+	124679104	124681035	A5SS	ENSMUST00000060226.11	known	0.00	1	404	1	404	n	0.00	0	364	0	364	n	0.00	0	998	0	998	n	0.00	0	519	0	519	n	0.00	1	779	1	779	n	0.00	0	585	0	585	n	0.00	1	549	1	549	n	0.00	1	527	1	527	n	0.00	0	357	0	357	n	0.00	0	597	0	597	n	0.00	0	377	0	377	n	0.01	3	487	3	487	y	ENSMUSG00000029390.14	Tmed2	chr5	protein_coding	transmembrane p24 trafficking protein 2
known_NIR_14228	chr5	124681227;124681570	124681550;124684959	+	124681227	124684959	cassetteExon	ENSMUST00000060226.11	known	0.00	0.0	741	0;0	741	n	0.00	0.0	759	0;0	759	n	0.00	0.0	1790	0;0	1790	n	0.00	0.0	882	0;0	882	n	0.00	0.0	1366	0;0	1366	n	0.00	0.0	1048	0;0	1048	n	0.04	43.0	1089	40;46	1089	y	0.00	0.0	1016	0;0	1016	n	0.00	0.0	740	0;0	740	n	0.00	0.0	1095	0;0	1095	n	0.00	0.0	880	0;0	880	n	0.00	0.0	1113	0;0	1113	n	ENSMUSG00000029390.14	Tmed2	chr5	protein_coding	transmembrane p24 trafficking protein 2
known_NIR_14229	chr5	124711868	124712661	-	124711817	124712661	A3SS	ENSMUST00000031334.15	known	0.02	2	87	2	87	y	0.00	0	68	0	68	n	0.02	2	101	2	101	y	0.01	1	78	1	78	n	0.03	3	111	3	111	y	0.06	3	51	3	51	y	0.03	3	106	3	106	y	0.00	0	67	0	67	n	0.00	0	81	0	81	n	0.02	3	120	3	120	y	0.01	1	111	1	111	n	0.02	2	94	2	94	y	ENSMUSG00000029388.15	Eif2b1	chr5	protein_coding	eukaryotic translation initiation factor 2B, subunit 1 (alpha)
known_NIR_14230	chr5	124797086	124798767	+	124797086	124798762	A3SS	ENSMUST00000037865.13	known	0.02	1	51	1	51	n	0.00	0	34	0	34	n	0.05	4	75	4	75	y	0.04	2	53	2	53	y	0.00	0	80	0	80	n	0.02	1	51	1	51	n	0.01	1	73	1	73	n	0.00	0	50	0	50	n	0.03	1	31	1	31	n	0.00	0	54	0	54	n	0.00	0	57	0	57	n	0.00	0	48	0	48	n	ENSMUSG00000038023.13	Atp6v0a2	chr5	protein_coding	ATPase, H+ transporting, lysosomal V0 subunit A2
known_NIR_14231	chr5	124953076	124961772	+	124940572	124961772	A5SS	ENSMUST00000111417.9	known	0.00	0	17	0	17	n	0.05	1	18	1	18	n	0.00	0	47	0	47	n	0.05	1	18	1	18	n	0.00	0	56	0	56	n	0.00	0	20	0	20	n	0.00	0	34	0	34	n	0.05	2	36	2	36	y	0.06	1	15	1	15	n	0.00	0	34	0	34	n	0.00	0	24	0	24	n	0.04	1	25	1	25	n	ENSMUSG00000079215.9	Zfp664	chr5	protein_coding	zinc finger protein 664
known_NIR_14232	chr5	125096054	125097024	-	125096054	125096883	A5SS	ENSMUST00000125053.8	known	0.54	25	21	25	21	y	0.45	23	28	23	28	y	0.46	19	22	19	22	y	0.44	14	18	14	18	y	0.57	24	18	24	18	y	0.74	17	6	17	6	y	0.44	21	27	21	27	y	0.58	11	8	11	8	y	0.41	17	24	17	24	y	0.32	18	39	18	39	y	0.48	23	25	23	25	y	0.34	15	29	15	29	y	ENSMUSG00000029478.17	Ncor2	chr5	protein_coding	nuclear receptor co-repressor 2
known_NIR_14233	chr5	125096054	125099935	-	125096054;125097110	125096883;125099935	ES	ENSMUST00000125053.8	known	0.23	12	39.5	12	21;58	y	0.20	10	39.0	10	28;50	y	0.26	14	40.5	14	22;59	y	0.30	13	30.5	13	18;43	y	0.32	20	42.0	20	18;66	y	0.37	7	12.0	7	6;18	y	0.23	11	37.0	11	27;47	y	0.27	7	18.5	7	8;29	y	0.26	14	40.0	14	24;56	y	0.17	12	57.5	12	39;76	y	0.16	8	42.5	8	25;60	y	0.18	9	41.0	9	29;53	y	ENSMUSG00000029478.17	Ncor2	chr5	protein_coding	nuclear receptor co-repressor 2
known_NIR_14234	chr5	125096054;125097110	125097024;125099935	-	125096054	125099935	cassetteExon	ENSMUST00000138890.3	known	0.78	41.5	12	25;58	12	y	0.78	36.5	10	23;50	10	y	0.74	39.0	14	19;59	14	y	0.69	28.5	13	14;43	13	y	0.69	45.0	20	24;66	20	y	0.71	17.5	7	17;18	7	y	0.76	34.0	11	21;47	11	y	0.74	20.0	7	11;29	7	y	0.72	36.5	14	17;56	14	y	0.80	47.0	12	18;76	12	y	0.84	41.5	8	23;60	8	y	0.79	34.0	9	15;53	9	y	ENSMUSG00000029478.17	Ncor2	chr5	protein_coding	nuclear receptor co-repressor 2
known_NIR_14235	chr5	125102868	125103752	-	125102868	125103866	A5SS	ENSMUST00000125053.8	known	0.26	8	23	8	23	y	0.18	4	18	4	18	y	0.21	10	38	10	38	y	0.26	7	20	7	20	y	0.24	10	31	10	31	y	0.20	6	24	6	24	y	0.10	2	19	2	19	y	0.23	7	24	7	24	y	0.33	9	18	9	18	y	0.18	6	27	6	27	y	0.14	5	32	5	32	y	0.24	11	34	11	34	y	ENSMUSG00000029478.17	Ncor2	chr5	protein_coding	nuclear receptor co-repressor 2
known_NIR_14236	chr5	125104281	125105676	-	125104281	125105685	A5SS	ENSMUST00000125053.8	known	0.38	14	23	14	23	y	0.28	5	13	5	13	y	0.32	12	26	12	26	y	0.42	11	15	11	15	y	0.48	27	29	27	29	y	0.47	8	9	8	9	y	0.41	11	16	11	16	y	0.53	8	7	8	7	y	0.38	10	16	10	16	y	0.54	29	25	29	25	y	0.24	9	28	9	28	y	0.42	16	22	16	22	y	ENSMUSG00000029478.17	Ncor2	chr5	protein_coding	nuclear receptor co-repressor 2
known_NIR_14237	chr5	125113982	125114338	-	125113982;125114230	125114126;125114338	ES	ENSMUST00000125053.8	known	0.20	3	12.0	3	10;14	y	0.15	2	11.0	2	12;10	y	0.05	1	21.0	1	26;16	n	0.09	2	20.5	2	20;21	y	0.12	4	30.5	4	36;25	y	0.00	0	10.5	0	15;6	n	0.12	2	14.5	2	16;13	y	0.13	2	13.0	2	13;13	y	0.24	4	13.0	4	10;16	y	0.04	1	25.0	1	27;23	n	0.00	0	12.5	0	13;12	n	0.03	1	28.5	1	31;26	n	ENSMUSG00000029478.17	Ncor2	chr5	protein_coding	nuclear receptor co-repressor 2
known_NIR_14238	chr5	125114440	125114925	-	125114443	125114925	A3SS	ENSMUST00000125053.8	known	0.25	2	6	2	6	n	0.22	2	7	2	7	n	0.26	6	17	6	17	y	0.11	2	17	2	17	y	0.21	6	22	6	22	y	0.00	0	4	0	4	n	0.10	1	9	1	9	n	0.18	2	9	2	9	y	0.10	1	9	1	9	n	0.06	1	17	1	17	n	0.22	4	14	4	14	y	0.15	3	17	3	17	y	ENSMUSG00000029478.17	Ncor2	chr5	protein_coding	nuclear receptor co-repressor 2
known_NIR_14239	chr5	125119031	125119809	-	125119028	125119809	A3SS	ENSMUST00000125053.8	known	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.09	1	10	1	10	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.09	1	10	1	10	n	0.22	2	7	2	7	n	0.25	1	3	1	3	n	0.18	2	9	2	9	y	0.29	2	5	2	5	n	0.25	4	12	4	12	y	ENSMUSG00000029478.17	Ncor2	chr5	protein_coding	nuclear receptor co-repressor 2
known_NIR_14240	chr5	125128182	125132797	-	125128122	125132797	A3SS	ENSMUST00000111402.9	known	0.00	0	23	0	23	n	0.21	5	19	5	19	y	0.21	7	27	7	27	y	0.07	2	28	2	28	y	0.17	4	20	4	20	y	0.14	2	12	2	12	y	0.12	4	28	4	28	y	0.12	2	15	2	15	y	0.18	4	18	4	18	y	0.06	2	33	2	33	y	0.05	1	19	1	19	n	0.14	4	25	4	25	y	ENSMUSG00000029478.17	Ncor2	chr5	protein_coding	nuclear receptor co-repressor 2
known_NIR_14241	chr5	125132939	125134906	-	125132939	125142904	A5SS	ENSMUST00000111402.9	known	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.08	3	35	3	35	y	0.04	1	26	1	26	n	0.03	1	32	1	32	n	0.00	0	9	0	9	n	0.15	3	17	3	17	y	0.00	0	22	0	22	n	0.00	0	29	0	29	n	0.09	2	20	2	20	y	0.00	0	20	0	20	n	0.04	1	23	1	23	n	ENSMUSG00000029478.17	Ncor2	chr5	protein_coding	nuclear receptor co-repressor 2
known_NIR_14242	chr5	125196673	125230671	-	125196673	125201834	5pMXE	ENSMUST00000055256.14	known	0.25	2	6	2	6	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.10	1	9	1	9	n	0.00	0	24	0	24	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.18	2	9	2	9	y	0.00	0	9	0	9	n	0.00	0	23	0	23	n	0.00	0	5	0	5	n	0.08	1	12	1	12	n	ENSMUSG00000029478.17	Ncor2	chr5	protein_coding	nuclear receptor co-repressor 2
known_NIR_14243	chr5	125196673	125230671	-	125196673;125202044	125201834;125230671	ES	ENSMUST00000111398.8	known	0.29	2	5.0	2	6;4	y	0.00	0	2.5	0	3;2	n	0.00	0	7.0	0	10;4	n	0.15	1	5.5	1	9;2	n	0.00	0	19.5	0	24;15	n	0.00	0	3.5	0	6;1	n	0.00	0	6.5	0	8;5	n	0.27	2	5.5	2	9;2	y	0.00	0	6.5	0	9;4	n	0.00	0	15.0	0	23;7	n	0.00	0	5.0	0	5;5	n	0.11	1	8.5	1	12;5	n	ENSMUSG00000029478.17	Ncor2	chr5	protein_coding	nuclear receptor co-repressor 2
known_NIR_14244	chr5	125202044;125230716	125230671;125256061	-	125202044	125256061	cassetteExon	ENSMUST00000111402.9	known	1.00	4.0	0	4;4	0	n	1.00	1.0	0	2;0	0	n	1.00	4.0	0	4;4	0	n	0.78	3.5	1	2;5	1	n	0.87	13.0	2	15;11	2	y	0.20	0.5	2	1;0	2	n	1.00	4.0	0	5;3	0	n	1.00	3.0	0	2;4	0	n	1.00	4.5	0	4;5	0	n	1.00	5.0	0	7;3	0	n	1.00	6.0	0	5;7	0	n	1.00	7.0	0	5;9	0	n	ENSMUSG00000029478.17	Ncor2	chr5	protein_coding	nuclear receptor co-repressor 2
known_NIR_14245	chr5	125354929	125360963	-	125354929;125358297	125358169;125360963	ES	ENSMUST00000086075.13	known	0.15	56	319.5	56	332;307	y	0.16	69	375.0	69	406;344	y	0.29	107	267.0	107	288;246	y	0.16	61	316.0	61	326;306	y	0.18	109	508.5	109	531;486	y	0.27	59	159.0	59	155;163	y	0.24	133	425.0	133	459;391	y	0.17	45	218.0	45	242;194	y	0.21	71	272.5	71	275;270	y	0.24	122	395.5	122	400;391	y	0.16	68	353.5	68	392;315	y	0.19	82	343.0	82	369;317	y	ENSMUSG00000037936.16	Scarb1	chr5	protein_coding	scavenger receptor class B, member 1
known_NIR_14246	chr5	125361128	125361745	-	125361109	125361745	A3SS	ENSMUST00000086075.13	known	0.00	0	367	0	367	n	0.00	0	412	0	412	n	0.00	0	383	0	383	n	0.00	0	398	0	398	n	0.00	0	614	0	614	n	0.00	0	236	0	236	n	0.00	0	524	0	524	n	0.00	0	246	0	246	n	0.00	0	328	0	328	n	0.00	1	512	1	512	n	0.00	2	431	2	431	y	0.00	0	424	0	424	n	ENSMUSG00000037936.16	Scarb1	chr5	protein_coding	scavenger receptor class B, member 1
known_NIR_14247	chr5	125381416	125403098	-	125381416	125417821	A5SS	ENSMUST00000086075.13	known	0.00	0	245	0	245	n	0.00	1	212	1	212	n	0.00	0	291	0	291	n	0.00	0	274	0	274	n	0.01	4	471	4	471	y	0.00	0	185	0	185	n	0.01	2	364	2	364	y	0.00	0	275	0	275	n	0.01	3	205	3	205	y	0.02	8	356	8	356	y	0.00	1	244	1	244	n	0.01	3	345	3	345	y	ENSMUSG00000037936.16	Scarb1	chr5	protein_coding	scavenger receptor class B, member 1
known_NIR_14248	chr5	125465328	125466974	-	125465328	125466761	A5SS	ENSMUST00000136312.2	known	0.02	5	311	5	311	y	0.03	5	183	5	183	y	0.02	4	251	4	251	y	0.03	9	324	9	324	y	0.02	6	381	6	381	y	0.02	3	187	3	187	y	0.02	6	347	6	347	y	0.01	3	230	3	230	y	0.02	5	319	5	319	y	0.01	6	431	6	431	y	0.01	5	436	5	436	y	0.01	6	482	6	482	y	ENSMUSG00000008348.10	Ubc	chr5	protein_coding	ubiquitin C
known_NIR_14249	chr5	125528836;125529309	125529212;125531390	+	125528836	125531390	cassetteExon	ENSMUST00000049040.14	known	0.01	0.5	61	0;1	61	n	0.02	1.5	76	0;3	76	n	0.03	2.0	65	3;1	65	n	0.01	0.5	76	1;0	76	n	0.04	4.0	108	3;5	108	y	0.04	2.0	52	1;3	52	n	0.03	3.0	100	3;3	100	y	0.03	2.0	66	2;2	66	y	0.06	4.5	76	2;7	76	y	0.05	5.5	115	5;6	115	y	0.06	5.5	91	6;5	91	y	0.05	4.5	82	3;6	82	y	ENSMUSG00000037905.14	Bri3bp	chr5	protein_coding	Bri3 binding protein
known_NIR_14250	chr5	125591291	125591927	+	125591291	125591992	A3SS	ENSMUST00000031445.5	known	0.00	0	69	0	69	n	0.00	0	29	0	29	n	0.00	0	38	0	38	n	0.00	0	32	0	32	n	0.00	0	127	0	127	n	0.00	0	39	0	39	n	0.00	0	40	0	40	n	0.00	0	37	0	37	n	0.00	0	43	0	43	n	0.00	0	102	0	102	n	0.00	0	90	0	90	n	0.01	2	200	2	200	y	ENSMUSG00000029482.5	Aacs	chr5	protein_coding	acetoacetyl-CoA synthetase
known_NIR_14251	chr5	127680862	127681175	-	127680925	127681175	A3SS	ENSMUST00000031367.15	known	0.09	6	59	6	59	y	0.08	4	44	4	44	y	0.00	0	52	0	52	n	0.09	6	62	6	62	y	0.00	0	50	0	50	n	0.11	2	17	2	17	y	0.00	0	54	0	54	n	0.00	0	23	0	23	n	0.06	3	44	3	44	y	0.07	5	69	5	69	y	0.00	0	43	0	43	n	0.00	0	57	0	57	n	ENSMUSG00000029416.18	Slc15a4	chr5	protein_coding	solute carrier family 15, member 4
known_NIR_14252	chr5	127680915	127681175	-	127680925	127681175	A3SS	ENSMUST00000031367.15	known	0.03	2	59	2	59	y	0.00	0	44	0	44	n	0.00	0	52	0	52	n	0.05	3	62	3	62	y	0.14	8	50	8	50	y	0.11	2	17	2	17	y	0.07	4	54	4	54	y	0.04	1	23	1	23	n	0.00	0	44	0	44	n	0.00	0	69	0	69	n	0.10	5	43	5	43	y	0.02	1	57	1	57	n	ENSMUSG00000029416.18	Slc15a4	chr5	protein_coding	solute carrier family 15, member 4
known_NIR_14253	chr5	127681712	127685836	-	127681770	127685836	A3SS	ENSMUST00000031367.15	known	0.37	16	27	16	27	y	0.29	8	20	8	20	y	0.31	10	22	10	22	y	0.24	12	38	12	38	y	0.25	9	27	9	27	y	0.17	2	10	2	10	y	0.31	9	20	9	20	y	0.18	3	14	3	14	y	0.50	15	15	15	15	y	0.25	14	41	14	41	y	0.19	6	25	6	25	y	0.19	8	35	8	35	y	ENSMUSG00000029416.18	Slc15a4	chr5	protein_coding	solute carrier family 15, member 4
known_NIR_14254	chr5	127686125	127709898	-	127686125	127693879	5pMXE	ENSMUST00000031367.15	known	0.14	6	36	6	36	y	0.11	3	24	3	24	y	0.00	0	12	0	12	n	0.20	9	36	9	36	y	0.21	8	31	8	31	y	0.00	0	6	0	6	n	0.06	2	29	2	29	y	0.00	0	19	0	19	n	0.33	10	20	10	20	y	0.06	2	34	2	34	y	0.23	5	17	5	17	y	0.23	9	30	9	30	y	ENSMUSG00000029416.18	Slc15a4	chr5	protein_coding	solute carrier family 15, member 4
known_NIR_14255	chr5	129063494	129065866	-	129063494;129064906	129064782;129065866	ES	ENSMUST00000031378.14	known	0.65	16	8.5	16	8;9	y	0.84	8	1.5	8	1;2	n	0.43	9	12.0	9	13;11	y	0.85	22	4.0	22	3;5	y	0.71	20	8.0	20	10;6	y	0.58	9	6.5	9	6;7	y	0.70	26	11.0	26	13;9	y	0.51	9	8.5	9	7;10	y	0.63	6	3.5	6	1;6	n	0.59	10	7.0	10	10;4	y	0.74	13	4.5	13	4;5	y	0.73	12	4.5	12	6;3	y	ENSMUSG00000029428.14	Stx2	chr5	protein_coding	syntaxin 2
known_NIR_14256	chr5	129073521	129076574	-	129073525	129076574	A3SS	ENSMUST00000031378.14	known	0.00	0	24	0	24	n	0.00	0	19	0	19	n	0.00	0	7	0	7	n	0.00	0	22	0	22	n	0.00	0	29	0	29	n	0.00	0	12	0	12	n	0.00	0	22	0	22	n	0.09	1	10	1	10	n	0.00	0	14	0	14	n	0.07	2	26	2	26	y	0.00	0	11	0	11	n	0.00	0	18	0	18	n	ENSMUSG00000029428.14	Stx2	chr5	protein_coding	syntaxin 2
known_NIR_14257	chr5	129580657	129581047	+	129578660	129581047	A5SS	ENSMUST00000053737.9	known	0.00	0	24	0	24	n	0.00	0	10	0	10	n	0.00	0	27	0	27	n	0.00	0	27	0	27	n	0.00	0	22	0	22	n	0.00	0	11	0	11	n	0.10	2	18	2	18	y	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.04	1	24	1	24	n	0.10	1	9	1	9	n	0.00	0	22	0	22	n	ENSMUSG00000029439.15	Sfswap	chr5	protein_coding	splicing factor SWAP
known_NIR_14258	chr5	129581169	129581827	+	129581216	129581827	A5SS	ENSMUST00000053737.9	known	0.42	8	11	8	11	y	0.19	3	13	3	13	y	0.27	9	24	9	24	y	0.37	7	12	7	12	y	0.26	7	20	7	20	y	0.25	4	12	4	12	y	0.36	10	18	10	18	y	0.06	1	16	1	16	n	0.22	4	14	4	14	y	0.20	5	20	5	20	y	0.45	9	11	9	11	y	0.29	6	15	6	15	y	ENSMUSG00000029439.15	Sfswap	chr5	protein_coding	splicing factor SWAP
known_NIR_14259	chr5	129593196	129616639	+	129593215	129616639	A5SS	ENSMUST00000053737.9	known	0.00	0	19	0	19	n	0.00	0	22	0	22	n	0.03	1	38	1	38	n	0.11	2	17	2	17	y	0.00	0	28	0	28	n	0.00	0	12	0	12	n	0.00	0	23	0	23	n	0.00	0	18	0	18	n	0.00	0	7	0	7	n	0.00	0	30	0	30	n	0.00	0	20	0	20	n	0.00	0	23	0	23	n	ENSMUSG00000029439.15	Sfswap	chr5	protein_coding	splicing factor SWAP
known_NIR_14260	chr5	129620359	129626518	+	129620443	129626518	A5SS	ENSMUST00000053737.9	known	0.16	5	26	5	26	y	0.16	5	26	5	26	y	0.10	4	38	4	38	y	0.15	4	23	4	23	y	0.22	6	21	6	21	y	0.28	7	18	7	18	y	0.25	10	30	10	30	y	0.20	3	12	3	12	y	0.00	0	14	0	14	n	0.13	5	33	5	33	y	0.11	3	24	3	24	y	0.26	8	23	8	23	y	ENSMUSG00000029439.15	Sfswap	chr5	protein_coding	splicing factor SWAP
known_NIR_14261	chr5	129631772;129636685	129636533;129637744	+	129631772	129637744	cassetteExon	ENSMUST00000053737.9	known	0.18	6.0	28	8;4	28	y	0.12	5.5	40	4;7	40	y	0.06	2.5	36	0;5	36	n	0.00	0.0	21	0;0	21	n	0.14	6.5	39	8;5	39	y	0.14	3.5	22	5;2	22	y	0.14	6.0	37	6;6	37	y	0.11	3.5	29	3;4	29	y	0.02	0.5	21	1;0	21	n	0.10	4.5	41	3;6	41	y	0.08	3.5	39	0;7	39	n	0.00	0.0	25	0;0	25	n	ENSMUSG00000029439.15	Sfswap	chr5	protein_coding	splicing factor SWAP
known_NIR_14262	chr5	129792634	129792748	+	129792613	129792748	A5SS	ENSMUST00000119576.8	known	0.01	1	69	1	69	n	0.04	3	75	3	75	y	0.01	1	109	1	109	n	0.00	0	100	0	100	n	0.02	2	108	2	108	y	0.00	0	48	0	48	n	0.03	3	100	3	100	y	0.00	0	46	0	46	n	0.01	1	84	1	84	n	0.01	1	113	1	113	n	0.01	1	88	1	88	n	0.01	1	100	1	100	n	ENSMUSG00000034211.15	Mrps17	chr5	protein_coding	mitochondrial ribosomal protein S17
known_NIR_14263	chr5	129792827	129793791	+	129792974	129793791	A5SS	ENSMUST00000119576.8	known	0.72	63	24	63	24	y	0.77	57	17	57	17	y	0.71	94	38	94	38	y	0.76	78	25	78	25	y	0.75	114	39	114	39	y	0.86	60	10	60	10	y	0.71	93	38	93	38	y	0.68	56	26	56	26	y	0.75	79	26	79	26	y	0.79	125	34	125	34	y	0.81	76	18	76	18	y	0.77	85	26	85	26	y	ENSMUSG00000034211.15	Mrps17	chr5	protein_coding	mitochondrial ribosomal protein S17
known_NIR_14264	chr5	129792922	129793791	+	129792827	129793791	A5SS	ENSMUST00000042191.12	known	0.12	9	63	9	63	y	0.23	17	57	17	57	y	0.21	25	94	25	94	y	0.19	18	78	18	78	y	0.19	26	114	26	114	y	0.10	7	60	7	60	y	0.18	20	93	20	93	y	0.19	13	56	13	56	y	0.15	14	79	14	79	y	0.16	24	125	24	125	y	0.16	14	76	14	76	y	0.14	14	85	14	85	y	ENSMUSG00000034211.15	Mrps17	chr5	protein_coding	mitochondrial ribosomal protein S17
known_NIR_14265	chr5	129792922	129793791	+	129792974	129793791	A5SS	ENSMUST00000119576.8	known	0.27	9	24	9	24	y	0.50	17	17	17	17	y	0.40	25	38	25	38	y	0.42	18	25	18	25	y	0.40	26	39	26	39	y	0.41	7	10	7	10	y	0.34	20	38	20	38	y	0.33	13	26	13	26	y	0.35	14	26	14	26	y	0.41	24	34	24	34	y	0.44	14	18	14	18	y	0.35	14	26	14	26	y	ENSMUSG00000034211.15	Mrps17	chr5	protein_coding	mitochondrial ribosomal protein S17
known_NIR_14266	chr5	129792958	129793791	+	129792827	129793791	A5SS	ENSMUST00000042191.12	known	0.20	16	63	16	63	y	0.23	17	57	17	57	y	0.18	21	94	21	94	y	0.22	22	78	22	78	y	0.15	20	114	20	114	y	0.19	14	60	14	60	y	0.19	22	93	22	93	y	0.16	11	56	11	56	y	0.19	18	79	18	79	y	0.14	21	125	21	125	y	0.17	16	76	16	76	y	0.25	29	85	29	85	y	ENSMUSG00000034211.15	Mrps17	chr5	protein_coding	mitochondrial ribosomal protein S17
known_NIR_14267	chr5	129792958	129793791	+	129792922	129793791	A5SS	ENSMUST00000118420.8	known	0.64	16	9	16	9	y	0.50	17	17	17	17	y	0.46	21	25	21	25	y	0.55	22	18	22	18	y	0.43	20	26	20	26	y	0.67	14	7	14	7	y	0.52	22	20	22	20	y	0.46	11	13	11	13	y	0.56	18	14	18	14	y	0.47	21	24	21	24	y	0.53	16	14	16	14	y	0.67	29	14	29	14	y	ENSMUSG00000034211.15	Mrps17	chr5	protein_coding	mitochondrial ribosomal protein S17
known_NIR_14268	chr5	129792958	129793791	+	129792974	129793791	A5SS	ENSMUST00000119576.8	known	0.40	16	24	16	24	y	0.50	17	17	17	17	y	0.36	21	38	21	38	y	0.47	22	25	22	25	y	0.34	20	39	20	39	y	0.58	14	10	14	10	y	0.37	22	38	22	38	y	0.30	11	26	11	26	y	0.41	18	26	18	26	y	0.38	21	34	21	34	y	0.47	16	18	16	18	y	0.53	29	26	29	26	y	ENSMUSG00000034211.15	Mrps17	chr5	protein_coding	mitochondrial ribosomal protein S17
known_NIR_14269	chr5	129792958	129793791	+	129792976	129793791	A5SS	ENSMUST00000154358.6	known	0.94	16	1	16	1	n	0.81	17	4	17	4	y	0.91	21	2	21	2	y	0.85	22	4	22	4	y	0.95	20	1	20	1	n	0.82	14	3	14	3	y	0.92	22	2	22	2	y	0.92	11	1	11	1	n	1.00	18	0	18	0	n	0.95	21	1	21	1	n	0.89	16	2	16	2	y	0.85	29	5	29	5	y	ENSMUSG00000034211.15	Mrps17	chr5	protein_coding	mitochondrial ribosomal protein S17
known_NIR_14270	chr5	129792958	129793791	+	129793005	129793791	A5SS	ENSMUST00000119604.8	known	0.76	16	5	16	5	y	0.68	17	8	17	8	y	0.78	21	6	21	6	y	0.67	22	11	22	11	y	0.77	20	6	20	6	y	0.64	14	8	14	8	y	0.88	22	3	22	3	y	0.69	11	5	11	5	y	0.82	18	4	18	4	y	0.81	21	5	21	5	y	0.76	16	5	16	5	y	0.88	29	4	29	4	y	ENSMUSG00000034211.15	Mrps17	chr5	protein_coding	mitochondrial ribosomal protein S17
known_NIR_14271	chr5	129792976	129793791	+	129792827	129793791	A5SS	ENSMUST00000042191.12	known	0.02	1	63	1	63	n	0.07	4	57	4	57	y	0.02	2	94	2	94	y	0.05	4	78	4	78	y	0.01	1	114	1	114	n	0.05	3	60	3	60	y	0.02	2	93	2	93	y	0.02	1	56	1	56	n	0.00	0	79	0	79	n	0.01	1	125	1	125	n	0.03	2	76	2	76	y	0.06	5	85	5	85	y	ENSMUSG00000034211.15	Mrps17	chr5	protein_coding	mitochondrial ribosomal protein S17
known_NIR_14272	chr5	129792976	129793791	+	129792922	129793791	A5SS	ENSMUST00000118420.8	known	0.10	1	9	1	9	n	0.19	4	17	4	17	y	0.07	2	25	2	25	y	0.18	4	18	4	18	y	0.04	1	26	1	26	n	0.30	3	7	3	7	y	0.09	2	20	2	20	y	0.07	1	13	1	13	n	0.00	0	14	0	14	n	0.04	1	24	1	24	n	0.12	2	14	2	14	y	0.26	5	14	5	14	y	ENSMUSG00000034211.15	Mrps17	chr5	protein_coding	mitochondrial ribosomal protein S17
known_NIR_14273	chr5	129792976	129793791	+	129792974	129793791	A5SS	ENSMUST00000119576.8	known	0.04	1	24	1	24	n	0.19	4	17	4	17	y	0.05	2	38	2	38	y	0.14	4	25	4	25	y	0.03	1	39	1	39	n	0.23	3	10	3	10	y	0.05	2	38	2	38	y	0.04	1	26	1	26	n	0.00	0	26	0	26	n	0.03	1	34	1	34	n	0.10	2	18	2	18	y	0.16	5	26	5	26	y	ENSMUSG00000034211.15	Mrps17	chr5	protein_coding	mitochondrial ribosomal protein S17
known_NIR_14274	chr5	129793005	129793791	+	129792827	129793791	A5SS	ENSMUST00000042191.12	known	0.07	5	63	5	63	y	0.12	8	57	8	57	y	0.06	6	94	6	94	y	0.12	11	78	11	78	y	0.05	6	114	6	114	y	0.12	8	60	8	60	y	0.03	3	93	3	93	y	0.08	5	56	5	56	y	0.05	4	79	4	79	y	0.04	5	125	5	125	y	0.06	5	76	5	76	y	0.04	4	85	4	85	y	ENSMUSG00000034211.15	Mrps17	chr5	protein_coding	mitochondrial ribosomal protein S17
known_NIR_14275	chr5	129793005	129793791	+	129792922	129793791	A5SS	ENSMUST00000118420.8	known	0.36	5	9	5	9	y	0.32	8	17	8	17	y	0.19	6	25	6	25	y	0.38	11	18	11	18	y	0.19	6	26	6	26	y	0.53	8	7	8	7	y	0.13	3	20	3	20	y	0.28	5	13	5	13	y	0.22	4	14	4	14	y	0.17	5	24	5	24	y	0.26	5	14	5	14	y	0.22	4	14	4	14	y	ENSMUSG00000034211.15	Mrps17	chr5	protein_coding	mitochondrial ribosomal protein S17
known_NIR_14276	chr5	129793005	129793791	+	129792974	129793791	A5SS	ENSMUST00000119576.8	known	0.17	5	24	5	24	y	0.32	8	17	8	17	y	0.14	6	38	6	38	y	0.31	11	25	11	25	y	0.13	6	39	6	39	y	0.44	8	10	8	10	y	0.07	3	38	3	38	y	0.16	5	26	5	26	y	0.13	4	26	4	26	y	0.13	5	34	5	34	y	0.22	5	18	5	18	y	0.13	4	26	4	26	y	ENSMUSG00000034211.15	Mrps17	chr5	protein_coding	mitochondrial ribosomal protein S17
known_NIR_14277	chr5	129793005	129793791	+	129792976	129793791	A5SS	ENSMUST00000154358.6	known	0.83	5	1	5	1	n	0.67	8	4	8	4	y	0.75	6	2	6	2	n	0.73	11	4	11	4	y	0.86	6	1	6	1	n	0.73	8	3	8	3	y	0.60	3	2	3	2	n	0.83	5	1	5	1	n	1.00	4	0	4	0	n	0.83	5	1	5	1	n	0.71	5	2	5	2	n	0.44	4	5	4	5	n	ENSMUSG00000034211.15	Mrps17	chr5	protein_coding	mitochondrial ribosomal protein S17
known_NIR_14278	chr5	129825097	129831906	+	129825097;129830384	129830290;129831906	ES	ENSMUST00000086046.10	known	0.00	0	18.0	0	15;21	n	0.00	0	13.5	0	12;15	n	0.04	2	44.5	2	38;51	y	0.00	0	26.0	0	22;30	n	0.00	0	36.0	0	37;35	n	0.00	0	28.5	0	26;31	n	0.00	0	103.0	0	109;97	n	0.00	0	27.5	0	30;25	n	0.00	0	18.0	0	12;24	n	0.00	0	28.5	0	24;33	n	0.00	0	15.5	0	14;17	n	0.04	1	25.0	1	27;23	n	ENSMUSG00000029432.13	Nipsnap2	chr5	protein_coding	nipsnap homolog 2
known_NIR_14279	chr5	129825097	129831906	+	129830384	129831906	5pMXE	ENSMUST00000137604.2	known	0.00	0	21	0	21	n	0.00	0	15	0	15	n	0.04	2	51	2	51	y	0.00	0	30	0	30	n	0.00	0	35	0	35	n	0.00	0	31	0	31	n	0.00	0	97	0	97	n	0.00	0	25	0	25	n	0.00	0	24	0	24	n	0.00	0	33	0	33	n	0.00	0	17	0	17	n	0.04	1	23	1	23	n	ENSMUSG00000029432.13	Nipsnap2	chr5	protein_coding	nipsnap homolog 2
known_NIR_14280	chr5	129830384	129831836	+	129830384	129831906	A3SS	ENSMUST00000086046.10	known	0.00	0	21	0	21	n	0.00	0	15	0	15	n	0.00	0	51	0	51	n	0.03	1	30	1	30	n	0.00	0	35	0	35	n	0.00	0	31	0	31	n	0.02	2	97	2	97	y	0.00	0	25	0	25	n	0.00	0	24	0	24	n	0.00	0	33	0	33	n	0.00	0	17	0	17	n	0.00	0	23	0	23	n	ENSMUSG00000029432.13	Nipsnap2	chr5	protein_coding	nipsnap homolog 2
known_NIR_14281	chr5	129867751	129867886	+	129867751	129868533	A3SS	ENSMUST00000201414.5	known	0.02	4	257	4	257	y	0.03	5	184	5	184	y	0.00	0	274	0	274	n	0.00	0	380	0	380	n	0.01	3	300	3	300	y	0.00	0	136	0	136	n	0.01	4	324	4	324	y	0.00	0	173	0	173	n	0.01	2	216	2	216	y	0.01	4	370	4	370	y	0.00	0	257	0	257	n	0.00	1	292	1	292	n	ENSMUSG00000029447.14	Cct6a	chr5	protein_coding	chaperonin containing Tcp1, subunit 6a (zeta)
known_NIR_14282	chr5	129875927	129881715	+	129875927;129878898	129878742;129881715	ES	ENSMUST00000171300.8	known	0.00	0	37.0	0	41;33	n	0.00	0	30.0	0	25;35	n	0.03	1	28.5	1	23;34	n	0.05	2	34.5	2	23;46	y	0.00	0	38.5	0	25;52	n	0.00	0	14.5	0	13;16	n	0.00	0	31.5	0	30;33	n	0.00	0	22.5	0	20;25	n	0.00	0	26.0	0	16;36	n	0.00	0	30.0	0	23;37	n	0.00	0	24.5	0	11;38	n	0.06	2	32.5	2	28;37	y	ENSMUSG00000025538.16	Sumf2	chr5	protein_coding	sulfatase modifying factor 2
known_NIR_14283	chr5	129881826	129883529	+	129881826;129882908	129882864;129883529	ES	ENSMUST00000171300.8	known	0.00	0	23.5	0	25;22	n	0.05	1	18.5	1	21;16	n	0.00	0	18.0	0	17;19	n	0.00	0	33.0	0	33;33	n	0.12	7	49.5	7	51;48	y	0.00	0	15.0	0	16;14	n	0.00	0	35.5	0	38;33	n	0.00	0	27.0	0	23;31	n	0.00	0	21.5	0	22;21	n	0.00	0	33.0	0	34;32	n	0.11	4	33.0	4	33;33	y	0.00	0	20.0	0	22;18	n	ENSMUSG00000025538.16	Sumf2	chr5	protein_coding	sulfatase modifying factor 2
known_NIR_14284	chr5	129971068	130007360	+	129971206	130007360	A5SS	ENSMUST00000051758.11	known	0.04	2	43	2	43	y	0.03	1	35	1	35	n	0.09	8	81	8	81	y	0.05	3	53	3	53	y	0.01	1	81	1	81	n	0.04	2	53	2	53	y	0.05	3	57	3	57	y	0.03	2	60	2	60	y	0.11	4	34	4	34	y	0.05	3	63	3	63	y	0.08	3	33	3	33	y	0.02	1	50	1	50	n	ENSMUSG00000066735.9	Vkorc1l1	chr5	protein_coding	vitamin K epoxide reductase complex, subunit 1-like 1
known_NIR_14285	chr5	129971206	130007360	+	130006033	130007360	5pMXE	ENSMUST00000202486.2	known	0.86	43	7	43	7	y	0.97	35	1	35	1	n	0.96	81	3	81	3	y	0.88	53	7	53	7	y	0.90	81	9	81	9	y	1.00	53	0	53	0	n	0.92	57	5	57	5	y	0.95	60	3	60	3	y	0.94	34	2	34	2	y	0.91	63	6	63	6	y	0.92	33	3	33	3	y	0.96	50	2	50	2	y	ENSMUSG00000066735.9	Vkorc1l1	chr5	protein_coding	vitamin K epoxide reductase complex, subunit 1-like 1
known_NIR_14286	chr5	129971206	130010982	+	129971206;130007469	130007360;130010982	ES	ENSMUST00000051758.11	known	0.00	0	49.5	0	43;56	n	0.05	2	38.5	2	35;42	y	0.04	4	89.0	4	81;97	y	0.00	0	66.5	0	53;80	n	0.02	2	86.5	2	81;92	y	0.05	3	54.0	3	53;55	y	0.03	2	63.5	2	57;70	y	0.05	3	55.0	3	60;50	y	0.00	0	34.0	0	34;34	n	0.01	1	70.5	1	63;78	n	0.00	0	38.5	0	33;44	n	0.02	1	54.0	1	50;58	n	ENSMUSG00000066735.9	Vkorc1l1	chr5	protein_coding	vitamin K epoxide reductase complex, subunit 1-like 1
known_NIR_14287	chr5	129971206	130010982	+	130007469	130010982	A5SS&ES	ENSMUST00000073945.6	known	0.00	0	56	0	56	n	0.05	2	42	2	42	y	0.04	4	97	4	97	y	0.00	0	80	0	80	n	0.02	2	92	2	92	y	0.05	3	55	3	55	y	0.03	2	70	2	70	y	0.06	3	50	3	50	y	0.00	0	34	0	34	n	0.01	1	78	1	78	n	0.00	0	44	0	44	n	0.02	1	58	1	58	n	ENSMUSG00000066735.9	Vkorc1l1	chr5	protein_coding	vitamin K epoxide reductase complex, subunit 1-like 1
known_NIR_14288	chr5	130006033	130007360	+	129971068	130007360	A5SS	ENSMUST00000073945.6	known	0.78	7	2	7	2	n	0.50	1	1	1	1	n	0.27	3	8	3	8	y	0.70	7	3	7	3	y	0.90	9	1	9	1	n	0.00	0	2	0	2	n	0.62	5	3	5	3	n	0.60	3	2	3	2	n	0.33	2	4	2	4	n	0.67	6	3	6	3	n	0.50	3	3	3	3	n	0.67	2	1	2	1	n	ENSMUSG00000066735.9	Vkorc1l1	chr5	protein_coding	vitamin K epoxide reductase complex, subunit 1-like 1
known_NIR_14289	chr5	130028910	130029598	-	130028910;130029383	130029202;130029598	ES	ENSMUST00000026613.14	known	0.00	0	46.5	0	56;37	n	0.00	0	39.5	0	38;41	n	0.05	2	37.5	2	38;37	y	0.02	1	61.0	1	61;61	n	0.01	1	67.0	1	77;57	n	0.00	0	24.0	0	29;19	n	0.00	0	50.0	0	56;44	n	0.03	1	30.0	1	31;29	n	0.00	0	27.5	0	31;24	n	0.00	0	57.5	0	61;54	n	0.00	0	33.5	0	44;23	n	0.07	4	53.0	4	63;43	y	ENSMUSG00000025534.18	Gusb	chr5	protein_coding	glucuronidase, beta
known_NIR_14290	chr5	130028910	130029598	-	130029383	130029598	A3SS	ENSMUST00000122994.2	known	0.00	0	37	0	37	n	0.00	0	41	0	41	n	0.05	2	37	2	37	y	0.02	1	61	1	61	n	0.02	1	57	1	57	n	0.00	0	19	0	19	n	0.00	0	44	0	44	n	0.03	1	29	1	29	n	0.00	0	24	0	24	n	0.00	0	54	0	54	n	0.00	0	23	0	23	n	0.09	4	43	4	43	y	ENSMUSG00000025534.18	Gusb	chr5	protein_coding	glucuronidase, beta
known_NIR_14291	chr5	130042374	130042804	-	130042356	130042804	A3SS	ENSMUST00000161094.8	known	0.00	6	2112	6	2112	y	0.00	1	1621	1	1621	n	0.00	1	925	1	925	n	0.00	6	2048	6	2048	y	0.00	4	1993	4	1993	y	0.00	0	1030	0	1030	n	0.00	9	1875	9	1875	y	0.00	1	827	1	827	n	0.00	4	1502	4	1502	y	0.00	3	1837	3	1837	y	0.00	3	1726	3	1726	y	0.00	6	2545	6	2545	y	ENSMUSG00000025533.16	Asl	chr5	protein_coding	argininosuccinate lyase
known_NIR_14292	chr5	130045669	130047151	-	130045214	130047151	A3SS	ENSMUST00000161094.8	known	0.01	11	1544	11	1544	y	0.00	4	1102	4	1102	y	0.01	6	738	6	738	y	0.01	15	1644	15	1644	y	0.01	13	1575	13	1575	y	0.01	7	808	7	808	y	0.01	12	1271	12	1271	y	0.01	9	723	9	723	y	0.00	3	1197	3	1197	y	0.00	7	1433	7	1433	y	0.01	7	1251	7	1251	y	0.01	13	1873	13	1873	y	ENSMUSG00000025533.16	Asl	chr5	protein_coding	argininosuccinate lyase
known_NIR_14293	chr5	130048697;130052539	130052477;130052883	-	130048697	130052883	cassetteExon	ENSMUST00000161094.8	known	0.00	2.5	1099	5;0	1099	n	0.00	1.5	758	3;0	758	n	0.00	0.5	513	1;0	513	n	0.00	1.5	1250	3;0	1250	n	0.00	0.5	1091	1;0	1091	n	0.00	0.0	553	0;0	553	n	0.00	2.0	950	4;0	950	n	0.00	1.0	580	2;0	580	n	0.00	1.0	833	2;0	833	n	0.00	3.5	1035	7;0	1035	n	0.00	2.5	902	2;3	902	y	0.00	2.0	1377	4;0	1377	n	ENSMUSG00000025533.16	Asl	chr5	protein_coding	argininosuccinate lyase
known_NIR_14294	chr5	130052937	130053049	-	130052937	130053135	A5SS	ENSMUST00000161094.8	known	0.61	166	106	166	106	y	0.52	109	100	109	100	y	0.42	64	87	64	87	y	0.57	177	136	177	136	y	0.59	189	130	189	130	y	0.52	83	78	83	78	y	0.48	147	160	147	160	y	0.46	78	92	78	92	y	0.52	131	119	131	119	y	0.39	112	175	112	175	y	0.51	153	145	153	145	y	0.58	238	175	238	175	y	ENSMUSG00000025533.16	Asl	chr5	protein_coding	argininosuccinate lyase
known_NIR_14295	chr5	130058335	130063753	+	130058248	130063753	A5SS	ENSMUST00000026608.11	known	0.00	0	65	0	65	n	0.06	3	47	3	47	y	0.12	11	77	11	77	y	0.12	7	52	7	52	y	0.11	9	72	9	72	y	0.06	3	51	3	51	y	0.04	3	70	3	70	y	0.10	5	45	5	45	y	0.06	4	60	4	60	y	0.18	13	58	13	58	y	0.00	0	66	0	66	n	0.08	6	67	6	67	y	ENSMUSG00000025532.14	Crcp	chr5	protein_coding	calcitonin gene-related peptide-receptor component protein
known_NIR_14296	chr5	130066759	130077767	+	130066759;130071141	130071047;130077767	ES	ENSMUST00000026608.11	known	0.02	2	94.0	2	89;99	y	0.08	7	82.5	7	87;78	y	0.01	1	119.5	1	110;129	n	0.00	0	105.5	0	78;133	n	0.03	4	125.5	4	115;136	y	0.06	4	60.0	4	59;61	y	0.01	1	116.5	1	100;133	n	0.05	3	61.5	3	64;59	y	0.00	0	82.0	0	75;89	n	0.02	3	129.0	3	113;145	y	0.03	3	99.0	3	101;97	y	0.04	4	110.0	4	102;118	y	ENSMUSG00000025532.14	Crcp	chr5	protein_coding	calcitonin gene-related peptide-receptor component protein
known_NIR_14297	chr5	130108502	130130431	+	130102275	130130431	A5SS	ENSMUST00000118993.8	known	0.85	51	9	51	9	y	0.89	25	3	25	3	y	1.00	68	0	68	0	n	0.91	40	4	40	4	y	0.92	76	7	76	7	y	1.00	42	0	42	0	n	0.83	34	7	34	7	y	0.94	32	2	32	2	y	0.93	28	2	28	2	y	0.97	35	1	35	1	n	0.92	33	3	33	3	y	0.87	45	7	45	7	y	ENSMUSG00000034118.16	Tpst1	chr5	protein_coding	protein-tyrosine sulfotransferase 1
known_NIR_14298	chr5	130219884	130226788	+	130219884	130226791	A3SS	ENSMUST00000119797.8	known	0.50	11	11	11	11	y	0.20	4	16	4	16	y	0.47	14	16	14	16	y	0.50	16	16	16	16	y	0.38	14	23	14	23	y	0.38	11	18	11	18	y	0.40	20	30	20	30	y	0.52	11	10	11	10	y	0.45	5	6	5	6	y	0.32	13	28	13	28	y	0.28	5	13	5	13	y	0.52	11	10	11	10	y	ENSMUSG00000025340.15	Rabgef1	chr5	protein_coding	RAB guanine nucleotide exchange factor (GEF) 1
known_NIR_14299	chr5	130219884	130235850	+	130219884;130226957	130226788;130235850	ES	ENSMUST00000148264.8	known	0.00	0	21.5	0	11;32	n	0.00	0	10.0	0	4;16	n	0.00	0	27.0	0	14;40	n	0.00	0	21.0	0	16;26	n	0.00	0	21.0	0	14;28	n	0.00	0	11.0	0	11;11	n	0.00	0	26.5	0	20;33	n	0.07	1	13.5	1	11;16	n	0.19	2	8.5	2	5;12	y	0.06	1	15.5	1	13;18	n	0.08	1	11.5	1	5;18	n	0.00	0	18.5	0	11;26	n	ENSMUSG00000025340.15	Rabgef1	chr5	protein_coding	RAB guanine nucleotide exchange factor (GEF) 1
known_NIR_14300	chr5	130219884	130235850	+	130219884;130226957	130226791;130235850	ES	ENSMUST00000119797.8	known	0.00	0	21.5	0	11;32	n	0.00	0	16.0	0	16;16	n	0.00	0	28.0	0	16;40	n	0.00	0	21.0	0	16;26	n	0.00	0	25.5	0	23;28	n	0.00	0	14.5	0	18;11	n	0.00	0	31.5	0	30;33	n	0.07	1	13.0	1	10;16	n	0.18	2	9.0	2	6;12	y	0.04	1	23.0	1	28;18	n	0.06	1	15.5	1	13;18	n	0.00	0	18.0	0	10;26	n	ENSMUSG00000025340.15	Rabgef1	chr5	protein_coding	RAB guanine nucleotide exchange factor (GEF) 1
known_NIR_14301	chr5	130282845	130284051	-	130282909	130284051	A3SS	ENSMUST00000026387.11	known	0.00	0	119	0	119	n	0.01	1	91	1	91	n	0.00	0	139	0	139	n	0.00	0	124	0	124	n	0.00	0	135	0	135	n	0.00	0	70	0	70	n	0.01	1	138	1	138	n	0.03	2	66	2	66	y	0.00	0	101	0	101	n	0.00	0	172	0	172	n	0.00	0	118	0	118	n	0.00	0	134	0	134	n	ENSMUSG00000025337.11	Sbds	chr5	protein_coding	SBDS ribosome maturation factor
known_NIR_14302	chr5	130282850	130284051	-	130282909	130284051	A3SS	ENSMUST00000026387.11	known	0.00	0	119	0	119	n	0.04	4	91	4	91	y	0.00	0	139	0	139	n	0.00	0	124	0	124	n	0.00	0	135	0	135	n	0.00	0	70	0	70	n	0.00	0	138	0	138	n	0.01	1	66	1	66	n	0.01	1	101	1	101	n	0.01	2	172	2	172	y	0.02	2	118	2	118	y	0.01	2	134	2	134	y	ENSMUSG00000025337.11	Sbds	chr5	protein_coding	SBDS ribosome maturation factor
known_NIR_14303	chr5	130282909	130283985	-	130282909	130284051	A5SS	ENSMUST00000026387.11	known	0.02	2	119	2	119	y	0.00	0	91	0	91	n	0.01	2	139	2	139	y	0.00	0	124	0	124	n	0.00	0	135	0	135	n	0.00	0	70	0	70	n	0.00	0	138	0	138	n	0.00	0	66	0	66	n	0.00	0	101	0	101	n	0.00	0	172	0	172	n	0.00	0	118	0	118	n	0.01	1	134	1	134	n	ENSMUSG00000025337.11	Sbds	chr5	protein_coding	SBDS ribosome maturation factor
known_NIR_14304	chr5	130286034	130287774	+	130284486	130287774	A5SS	ENSMUST00000173375.2	known	1.00	24	0	24	0	n	1.00	8	0	8	0	n	1.00	15	0	15	0	n	0.96	26	1	26	1	n	0.96	26	1	26	1	n	0.77	10	3	10	3	y	0.86	18	3	18	3	y	0.87	13	2	13	2	y	1.00	18	0	18	0	n	0.95	18	1	18	1	n	0.76	13	4	13	4	y	1.00	12	0	12	0	n	ENSMUSG00000056310.15	Tyw1	chr5	protein_coding	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)
known_NIR_14305	chr5	130303584	130305830	+	130303584	130306774	A3SS	ENSMUST00000173375.2	known	0.00	0	31	0	31	n	0.03	1	30	1	30	n	0.00	0	47	0	47	n	0.00	0	48	0	48	n	0.09	5	53	5	53	y	0.00	0	25	0	25	n	0.00	0	38	0	38	n	0.00	0	24	0	24	n	0.00	0	41	0	41	n	0.00	0	49	0	49	n	0.00	0	18	0	18	n	0.00	0	53	0	53	n	ENSMUSG00000056310.15	Tyw1	chr5	protein_coding	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)
known_NIR_14306	chr5	134250722	134250842	-	134250722	134250884	A5SS	ENSMUST00000146354.8	known	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.13	2	13	2	13	y	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	ENSMUSG00000015950.14	Ncf1	chr5	protein_coding	neutrophil cytosolic factor 1
known_NIR_14307	chr5	134267746	134269097	-	134267746;134268425	134268351;134269097	ES	ENSMUST00000059042.15	known	0.07	12	160.0	12	151;169	y	0.06	10	158.5	10	144;173	y	0.07	9	113.0	9	97;129	y	0.06	9	141.0	9	136;146	y	0.05	12	222.0	12	214;230	y	0.06	6	87.5	6	81;94	y	0.04	8	214.0	8	190;238	y	0.04	5	117.0	5	114;120	y	0.03	4	145.5	4	132;159	y	0.04	11	246.5	11	213;280	y	0.02	5	202.5	5	186;219	y	0.05	12	221.5	12	219;224	y	ENSMUSG00000060261.17	Gtf2i	chr5	protein_coding	general transcription factor II I
known_NIR_14308	chr5	134267746	134269097	-	134268425	134269097	3pMXE	ENSMUST00000173888.8	known	0.07	12	169	12	169	y	0.05	10	173	10	173	y	0.07	9	129	9	129	y	0.06	9	146	9	146	y	0.05	12	230	12	230	y	0.06	6	94	6	94	y	0.03	8	238	8	238	y	0.04	5	120	5	120	y	0.02	4	159	4	159	y	0.04	11	280	11	280	y	0.02	5	219	5	219	y	0.05	12	224	12	224	y	ENSMUSG00000060261.17	Gtf2i	chr5	protein_coding	general transcription factor II I
known_NIR_14309	chr5	134272453	134272755	-	134272441	134272755	A3SS	ENSMUST00000059042.15	known	0.52	95	88	95	88	y	0.43	54	72	54	72	y	0.44	67	84	67	84	y	0.48	79	84	79	84	y	0.44	105	133	105	133	y	0.39	35	54	35	54	y	0.54	102	88	102	88	y	0.45	45	55	45	55	y	0.43	65	87	65	87	y	0.53	121	109	121	109	y	0.47	77	86	77	86	y	0.50	85	85	85	85	y	ENSMUSG00000060261.17	Gtf2i	chr5	protein_coding	general transcription factor II I
known_NIR_14310	chr5	134288363	134289421	-	134284862	134289421	A3SS	ENSMUST00000059042.15	known	0.00	0	98	0	98	n	0.00	0	88	0	88	n	0.00	0	85	0	85	n	0.00	0	101	0	101	n	0.00	0	166	0	166	n	0.00	0	50	0	50	n	0.00	0	141	0	141	n	0.00	0	73	0	73	n	0.00	0	87	0	87	n	0.00	0	113	0	113	n	0.00	0	69	0	69	n	0.01	2	134	2	134	y	ENSMUSG00000060261.17	Gtf2i	chr5	protein_coding	general transcription factor II I
known_NIR_14311	chr5	134295510	134301378	-	134295510	134308291	A5SS	ENSMUST00000173888.8	known	0.86	19	3	19	3	y	0.78	7	2	7	2	n	0.83	25	5	25	5	y	0.78	21	6	21	6	y	0.88	42	6	42	6	y	0.62	8	5	8	5	y	0.86	18	3	18	3	y	0.92	23	2	23	2	y	0.82	23	5	23	5	y	0.97	39	1	39	1	n	0.94	17	1	17	1	n	0.80	32	8	32	8	y	ENSMUSG00000060261.17	Gtf2i	chr5	protein_coding	general transcription factor II I
known_NIR_14312	chr5	134295510	134301378	-	134295510	134311641	A5SS	ENSMUST00000172715.8	known	1.00	19	0	19	0	n	0.88	7	1	7	1	n	0.93	25	2	25	2	y	1.00	21	0	21	0	n	1.00	42	0	42	0	n	1.00	8	0	8	0	n	1.00	18	0	18	0	n	1.00	23	0	23	0	n	0.96	23	1	23	1	n	1.00	39	0	39	0	n	0.94	17	1	17	1	n	1.00	32	0	32	0	n	ENSMUSG00000060261.17	Gtf2i	chr5	protein_coding	general transcription factor II I
known_NIR_14313	chr5	134295510	134303393	-	134295510	134301378	5pMXE	ENSMUST00000174182.8	known	0.55	23	19	23	19	y	0.70	16	7	16	7	y	0.32	12	25	12	25	y	0.52	23	21	23	21	y	0.45	34	42	34	42	y	0.38	5	8	5	8	y	0.51	19	18	19	18	y	0.28	9	23	9	23	y	0.36	13	23	13	23	y	0.44	31	39	31	39	y	0.45	14	17	14	17	y	0.53	36	32	36	32	y	ENSMUSG00000060261.17	Gtf2i	chr5	protein_coding	general transcription factor II I
known_NIR_14314	chr5	134295510	134303393	-	134295510;134301440	134301378;134303393	ES	ENSMUST00000059042.15	known	0.47	23	25.5	23	19;32	y	0.62	16	10.0	16	7;13	y	0.29	12	30.0	12	25;35	y	0.52	23	21.5	23	21;22	y	0.43	34	45.5	34	42;49	y	0.26	5	14.0	5	8;20	y	0.45	19	23.0	19	18;28	y	0.27	9	24.0	9	23;25	y	0.31	13	29.0	13	23;35	y	0.41	31	44.0	31	39;49	y	0.43	14	18.5	14	17;20	y	0.51	36	35.0	36	32;38	y	ENSMUSG00000060261.17	Gtf2i	chr5	protein_coding	general transcription factor II I
known_NIR_14315	chr5	134295510	134308291	-	134295510	134303393	A5SS&ES	ENSMUST00000172904.8	known	0.12	3	23	3	23	y	0.11	2	16	2	16	y	0.29	5	12	5	12	y	0.21	6	23	6	23	y	0.15	6	34	6	34	y	0.50	5	5	5	5	y	0.14	3	19	3	19	y	0.18	2	9	2	9	y	0.28	5	13	5	13	y	0.03	1	31	1	31	n	0.07	1	14	1	14	n	0.18	8	36	8	36	y	ENSMUSG00000060261.17	Gtf2i	chr5	protein_coding	general transcription factor II I
known_NIR_14316	chr5	134295510	134308291	-	134295510;134303449	134303393;134308291	ES	ENSMUST00000173341.9	known	0.07	3	38.0	3	23;53	y	0.08	2	24.5	2	16;33	y	0.13	5	33.5	5	12;55	y	0.13	6	40.0	6	23;57	y	0.09	6	61.0	6	34;88	y	0.23	5	16.5	5	5;28	y	0.06	3	44.5	3	19;70	y	0.06	2	29.5	2	9;50	y	0.16	5	26.5	5	13;40	y	0.02	1	62.0	1	31;93	n	0.03	1	33.5	1	14;53	n	0.14	8	48.5	8	36;61	y	ENSMUSG00000060261.17	Gtf2i	chr5	protein_coding	general transcription factor II I
known_NIR_14317	chr5	134295510;134303449	134303393;134311641	-	134295510	134311641	cassetteExon	ENSMUST00000172715.8	known	1.00	11.5	0	23;0	0	n	0.90	9.0	1	16;2	1	n	0.79	7.5	2	12;3	2	y	1.00	14.0	0	23;5	0	n	1.00	20.0	0	34;6	0	n	1.00	3.5	0	5;2	0	n	1.00	12.0	0	19;5	0	n	1.00	4.5	0	9;0	0	n	0.88	7.0	1	13;1	1	n	1.00	16.0	0	31;1	0	n	0.88	7.0	1	14;0	1	n	1.00	19.5	0	36;3	0	n	ENSMUSG00000060261.17	Gtf2i	chr5	protein_coding	general transcription factor II I
known_NIR_14318	chr5	134295510;134303449	134303393;134311641	-	134295510;134308368	134308291;134311641	MXE	ENSMUST00000173888.8	known	0.23	11.5	37.5	23;0	3;72	n	0.28	9.0	23.0	16;2	2;44	y	0.20	7.5	30.5	12;3	5;56	y	0.27	14.0	37.5	23;5	6;69	y	0.25	20.0	61.5	34;6	6;117	y	0.15	3.5	20.0	5;2	5;35	y	0.22	12.0	43.0	19;5	3;83	y	0.12	4.5	32.0	9;0	2;62	n	0.21	7.0	26.5	13;1	5;48	n	0.25	16.0	49.0	31;1	1;97	n	0.22	7.0	25.5	14;0	1;50	n	0.31	19.5	43.0	36;3	8;78	y	ENSMUSG00000060261.17	Gtf2i	chr5	protein_coding	general transcription factor II I
known_NIR_14319	chr5	134295510;134308368	134308291;134311641	-	134295510	134311641	cassetteExon	ENSMUST00000172715.8	known	1.00	37.5	0	3;72	0	n	0.96	23.0	1	2;44	1	n	0.94	30.5	2	5;56	2	y	1.00	37.5	0	6;69	0	n	1.00	61.5	0	6;117	0	n	1.00	20.0	0	5;35	0	n	1.00	43.0	0	3;83	0	n	1.00	32.0	0	2;62	0	n	0.96	26.5	1	5;48	1	n	1.00	49.0	0	1;97	0	n	0.96	25.5	1	1;50	1	n	1.00	43.0	0	8;78	0	n	ENSMUSG00000060261.17	Gtf2i	chr5	protein_coding	general transcription factor II I
known_NIR_14320	chr5	134303449	134305226	-	134303449	134311641	A5SS	ENSMUST00000174133.5	known	-	-	-	-	-	-	0.60	3	2	3	2	n	0.50	3	3	3	3	n	0.29	2	5	2	5	n	0.45	5	6	5	6	y	0.33	1	2	1	2	n	0.44	4	5	4	5	n	1.00	1	0	1	0	n	0.75	3	1	3	1	n	0.83	5	1	5	1	n	1.00	2	0	2	0	n	0.57	4	3	4	3	n	ENSMUSG00000060261.17	Gtf2i	chr5	protein_coding	general transcription factor II I
known_NIR_14321	chr5	134303449	134311641	-	134303449;134308368	134308291;134311641	ES	ENSMUST00000111261.12	known	0.00	0	62.5	0	53;72	n	0.05	2	38.5	2	33;44	y	0.05	3	55.5	3	55;56	y	0.07	5	63.0	5	57;69	y	0.06	6	102.5	6	88;117	y	0.06	2	31.5	2	28;35	y	0.06	5	76.5	5	70;83	y	0.00	0	56.0	0	50;62	n	0.02	1	44.0	1	40;48	n	0.01	1	95.0	1	93;97	n	0.00	0	51.5	0	53;50	n	0.04	3	69.5	3	61;78	y	ENSMUSG00000060261.17	Gtf2i	chr5	protein_coding	general transcription factor II I
known_NIR_14322	chr5	134324467	134343042	-	134324467	134343237	A5SS	ENSMUST00000059042.15	known	0.14	3	18	3	18	y	0.00	0	11	0	11	n	0.00	0	23	0	23	n	0.00	0	25	0	25	n	0.00	0	43	0	43	n	0.00	0	18	0	18	n	0.00	0	40	0	40	n	0.00	0	30	0	30	n	0.00	0	18	0	18	n	0.00	0	36	0	36	n	0.00	0	27	0	27	n	0.00	0	33	0	33	n	ENSMUSG00000060261.17	Gtf2i	chr5	protein_coding	general transcription factor II I
known_NIR_14323	chr5	134324467	134343237	-	134324467	134335386	5pMXE	ENSMUST00000174773.3	known	0.86	18	3	18	3	y	0.85	11	2	11	2	y	1.00	23	0	23	0	n	0.83	25	5	25	5	y	0.90	43	5	43	5	y	0.90	18	2	18	2	y	0.91	40	4	40	4	y	0.97	30	1	30	1	n	1.00	18	0	18	0	n	0.95	36	2	36	2	y	0.96	27	1	27	1	n	0.97	33	1	33	1	n	ENSMUSG00000060261.17	Gtf2i	chr5	protein_coding	general transcription factor II I
known_NIR_14324	chr5	134324467;134335585	134335386;134343237	-	134324467	134343237	cassetteExon	ENSMUST00000059042.15	known	0.10	2.0	18	3;1	18	n	0.08	1.0	11	2;0	11	n	0.04	1.0	23	0;2	23	n	0.09	2.5	25	5;0	25	n	0.07	3.0	43	5;1	43	n	0.05	1.0	18	2;0	18	n	0.07	3.0	40	4;2	40	y	0.03	1.0	30	1;1	30	n	0.00	0.0	18	0;0	18	n	0.04	1.5	36	2;1	36	n	0.02	0.5	27	1;0	27	n	0.03	1.0	33	1;1	33	n	ENSMUSG00000060261.17	Gtf2i	chr5	protein_coding	general transcription factor II I
known_NIR_14325	chr5	134386750	134389092	-	134386750;134387972	134387842;134389092	ES	ENSMUST00000111244.5	known	0.00	0	26.5	0	19;34	n	0.03	1	38.5	1	51;26	n	0.00	0	45.5	0	45;46	n	0.11	2	16.5	2	18;15	y	0.00	0	33.5	0	29;38	n	0.00	0	26.5	0	27;26	n	0.09	5	53.5	5	45;62	y	0.05	1	17.5	1	16;19	n	0.03	1	29.0	1	33;25	n	0.00	0	40.0	0	51;29	n	0.03	1	36.5	1	40;33	n	0.04	1	24.0	1	23;25	n	ENSMUSG00000023079.15	Gtf2ird1	chr5	protein_coding	general transcription factor II I repeat domain-containing 1
known_NIR_14326	chr5	134386750	134389092	-	134387972	134389092	3pMXE	ENSMUST00000074114.12	known	0.00	0	34	0	34	n	0.04	1	26	1	26	n	0.00	0	46	0	46	n	0.12	2	15	2	15	y	0.00	0	38	0	38	n	0.00	0	26	0	26	n	0.07	5	62	5	62	y	0.05	1	19	1	19	n	0.04	1	25	1	25	n	0.00	0	29	0	29	n	0.03	1	33	1	33	n	0.04	1	25	1	25	n	ENSMUSG00000023079.15	Gtf2ird1	chr5	protein_coding	general transcription factor II I repeat domain-containing 1
known_NIR_14327	chr5	134392833	134395690	-	134392833	134408791	A5SS	ENSMUST00000100654.10	known	1.00	8	0	8	0	n	1.00	8	0	8	0	n	1.00	32	0	32	0	n	1.00	8	0	8	0	n	1.00	28	0	28	0	n	0.73	8	3	8	3	y	1.00	9	0	9	0	n	1.00	12	0	12	0	n	1.00	11	0	11	0	n	1.00	18	0	18	0	n	1.00	18	0	18	0	n	1.00	17	0	17	0	n	ENSMUSG00000023079.15	Gtf2ird1	chr5	protein_coding	general transcription factor II I repeat domain-containing 1
known_NIR_14328	chr5	134392833	134404961	-	134392833	134408791	A5SS	ENSMUST00000100654.10	known	1.00	10	0	10	0	n	1.00	9	0	9	0	n	1.00	37	0	37	0	n	1.00	25	0	25	0	n	1.00	20	0	20	0	n	0.81	13	3	13	3	y	1.00	17	0	17	0	n	1.00	17	0	17	0	n	1.00	15	0	15	0	n	1.00	11	0	11	0	n	1.00	13	0	13	0	n	1.00	16	0	16	0	n	ENSMUSG00000023079.15	Gtf2ird1	chr5	protein_coding	general transcription factor II I repeat domain-containing 1
known_NIR_14329	chr5	134392833;134395749	134395690;134404961	-	134392833	134404961	cassetteExon	ENSMUST00000111244.5	known	0.29	4.0	10	8;0	10	n	0.36	5.0	9	8;2	9	y	0.33	18.0	37	32;4	37	y	0.14	4.0	25	8;0	25	n	0.46	17.0	20	28;6	20	y	0.30	5.5	13	8;3	13	y	0.23	5.0	17	9;1	17	n	0.26	6.0	17	12;0	17	n	0.27	5.5	15	11;0	15	n	0.49	10.5	11	18;3	11	y	0.41	9.0	13	18;0	13	n	0.38	10.0	16	17;3	16	y	ENSMUSG00000023079.15	Gtf2ird1	chr5	protein_coding	general transcription factor II I repeat domain-containing 1
known_NIR_14330	chr5	134392833;134395770	134395690;134404961	-	134392833	134404961	cassetteExon	ENSMUST00000111244.5	known	0.47	9.0	10	8;10	10	y	0.59	13.0	9	8;18	9	y	0.43	28.0	37	32;24	37	y	0.38	15.0	25	8;22	25	y	0.57	26.0	20	28;24	20	y	0.40	8.5	13	8;9	13	y	0.47	15.0	17	9;21	17	y	0.46	14.5	17	12;17	17	y	0.52	16.5	15	11;22	15	y	0.67	22.5	11	18;27	11	y	0.60	19.5	13	18;21	13	y	0.54	19.0	16	17;21	16	y	ENSMUSG00000023079.15	Gtf2ird1	chr5	protein_coding	general transcription factor II I repeat domain-containing 1
known_NIR_14331	chr5	134395749	134404961	-	134395770	134404961	A3SS	ENSMUST00000073161.12	known	0.00	0	10	0	10	n	0.10	2	18	2	18	y	0.14	4	24	4	24	y	0.00	0	22	0	22	n	0.20	6	24	6	24	y	0.25	3	9	3	9	y	0.05	1	21	1	21	n	0.00	0	17	0	17	n	0.00	0	22	0	22	n	0.10	3	27	3	27	y	0.00	0	21	0	21	n	0.12	3	21	3	21	y	ENSMUSG00000023079.15	Gtf2ird1	chr5	protein_coding	general transcription factor II I repeat domain-containing 1
known_NIR_14332	chr5	134405931	134408791	-	134392833	134408791	A3SS	ENSMUST00000100654.10	known	1.00	16	0	16	0	n	1.00	8	0	8	0	n	1.00	68	0	68	0	n	1.00	27	0	27	0	n	1.00	30	0	30	0	n	0.82	14	3	14	3	y	1.00	28	0	28	0	n	1.00	17	0	17	0	n	1.00	24	0	24	0	n	1.00	27	0	27	0	n	1.00	28	0	28	0	n	1.00	25	0	25	0	n	ENSMUSG00000023079.15	Gtf2ird1	chr5	protein_coding	general transcription factor II I repeat domain-containing 1
known_NIR_14333	chr5	134408874	134411635	-	134408874;134411440	134411384;134411635	ES	ENSMUST00000111244.5	known	0.07	1	13.5	1	13;14	n	0.14	2	12.0	2	11;13	y	0.08	3	35.5	3	42;29	y	0.18	3	13.5	3	14;13	y	0.29	12	29.5	12	25;34	y	0.20	3	12.0	3	12;12	y	0.03	1	30.5	1	28;33	n	0.21	3	11.5	3	12;11	y	0.10	2	18.0	2	16;20	y	0.15	5	27.5	5	25;30	y	0.21	5	19.0	5	17;21	y	0.16	5	25.5	5	29;22	y	ENSMUSG00000023079.15	Gtf2ird1	chr5	protein_coding	general transcription factor II I repeat domain-containing 1
known_NIR_14334	chr5	134408874	134411635	-	134411440	134411635	3pMXE	ENSMUST00000200798.4	known	0.07	1	14	1	14	n	0.13	2	13	2	13	y	0.09	3	29	3	29	y	0.19	3	13	3	13	y	0.26	12	34	12	34	y	0.20	3	12	3	12	y	0.03	1	33	1	33	n	0.21	3	11	3	11	y	0.09	2	20	2	20	y	0.14	5	30	5	30	y	0.19	5	21	5	21	y	0.19	5	22	5	22	y	ENSMUSG00000023079.15	Gtf2ird1	chr5	protein_coding	general transcription factor II I repeat domain-containing 1
known_NIR_14335	chr5	134408874;134411539	134411384;134411635	-	134408874	134411635	cassetteExon	ENSMUST00000111245.9	known	0.87	6.5	1	13;0	1	n	0.73	5.5	2	11;0	2	n	0.89	25.0	3	42;8	3	y	0.70	7.0	3	14;0	3	n	0.53	13.5	12	25;2	12	y	0.71	7.5	3	12;3	3	y	0.94	15.0	1	28;2	1	n	0.67	6.0	3	12;0	3	n	0.81	8.5	2	16;1	2	n	0.71	12.5	5	25;0	5	n	0.66	9.5	5	17;2	5	y	0.76	15.5	5	29;2	5	y	ENSMUSG00000023079.15	Gtf2ird1	chr5	protein_coding	general transcription factor II I repeat domain-containing 1
known_NIR_14336	chr5	134411539	134411635	-	134411440	134411635	A3SS	ENSMUST00000111244.5	known	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.22	8	29	8	29	y	0.00	0	13	0	13	n	0.06	2	34	2	34	y	0.20	3	12	3	12	y	0.06	2	33	2	33	y	0.00	0	11	0	11	n	0.05	1	20	1	20	n	0.00	0	30	0	30	n	0.09	2	21	2	21	y	0.08	2	22	2	22	y	ENSMUSG00000023079.15	Gtf2ird1	chr5	protein_coding	general transcription factor II I repeat domain-containing 1
known_NIR_14337	chr5	134446035	134485363	-	134446035	134484966	5pMXE	ENSMUST00000111244.5	known	0.38	3	5	3	5	n	0.00	0	2	0	2	n	0.41	12	17	12	17	y	0.75	6	2	6	2	n	0.35	9	17	9	17	y	0.50	5	5	5	5	y	0.33	4	8	4	8	y	0.33	4	8	4	8	y	0.58	7	5	7	5	y	0.43	9	12	9	12	y	0.33	6	12	6	12	y	0.50	8	8	8	8	y	ENSMUSG00000023079.15	Gtf2ird1	chr5	protein_coding	general transcription factor II I repeat domain-containing 1
known_NIR_14338	chr5	134650940	134654220	-	134650940;134653354	134653295;134654220	ES	ENSMUST00000202622.4	known	0.49	92	94.5	92	64;125	y	0.46	91	105.5	91	74;137	y	0.33	83	170.5	83	131;210	y	0.49	133	139.0	133	109;169	y	0.44	128	163.5	128	123;204	y	0.41	59	86.0	59	67;105	y	0.48	120	130.0	120	103;157	y	0.48	69	73.5	69	62;85	y	0.44	84	108.0	84	76;140	y	0.55	167	136.5	167	110;163	y	0.53	100	87.0	100	69;105	y	0.62	175	109.5	175	84;135	y	ENSMUSG00000040731.14	Eif4h	chr5	protein_coding	eukaryotic translation initiation factor 4H
known_NIR_14339	chr5	134650940	134654220	-	134653354	134654220	3pMXE	ENSMUST00000202289.4	known	0.42	92	125	92	125	y	0.40	91	137	91	137	y	0.28	83	210	83	210	y	0.44	133	169	133	169	y	0.39	128	204	128	204	y	0.36	59	105	59	105	y	0.43	120	157	120	157	y	0.45	69	85	69	85	y	0.38	84	140	84	140	y	0.51	167	163	167	163	y	0.49	100	105	100	105	y	0.56	175	135	175	135	y	ENSMUSG00000040731.14	Eif4h	chr5	protein_coding	eukaryotic translation initiation factor 4H
known_NIR_14340	chr5	134961264	134961575	+	134961264	134961476	A3SS	ENSMUST00000047196.14	known	0.33	4	8	4	8	y	0.30	3	7	3	7	y	0.00	0	16	0	16	n	0.09	1	10	1	10	n	0.35	7	13	7	13	y	0.14	1	6	1	6	n	0.21	4	15	4	15	y	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.22	4	14	4	14	y	0.00	0	17	0	17	n	0.50	6	6	6	6	y	ENSMUSG00000040557.15	Mettl27	chr5	protein_coding	methyltransferase like 27
known_NIR_14341	chr5	134961302	134961476	+	134961264	134961476	A5SS	ENSMUST00000047196.14	known	0.27	3	8	3	8	y	0.46	6	7	6	7	y	0.11	2	16	2	16	y	0.38	6	10	6	10	y	0.32	6	13	6	13	y	0.25	2	6	2	6	n	0.12	2	15	2	15	y	0.00	0	6	0	6	n	0.50	6	6	6	6	y	0.22	4	14	4	14	y	0.15	3	17	3	17	y	0.50	6	6	6	6	y	ENSMUSG00000040557.15	Mettl27	chr5	protein_coding	methyltransferase like 27
known_NIR_14342	chr5	134963278	134969311	+	134963278;134964725	134964633;134969311	ES	ENSMUST00000047196.14	known	0.00	0	29.0	0	29;29	n	0.10	4	36.0	4	34;38	y	0.03	2	55.5	2	67;44	y	0.00	0	45.5	0	53;38	n	0.01	1	68.5	1	77;60	n	0.00	0	39.5	0	41;38	n	0.05	3	62.0	3	66;58	y	0.00	0	28.5	0	33;24	n	0.00	0	42.5	0	46;39	n	0.04	3	70.5	3	66;75	y	0.00	0	49.0	0	56;42	n	0.06	5	81.0	5	80;82	y	ENSMUSG00000040557.15	Mettl27	chr5	protein_coding	methyltransferase like 27
known_NIR_14343	chr5	134964725	134964939	+	134964725	134969311	A3SS	ENSMUST00000047196.14	known	0.00	0	29	0	29	n	0.00	0	38	0	38	n	0.00	0	44	0	44	n	0.05	2	38	2	38	y	0.02	1	60	1	60	n	0.00	0	38	0	38	n	0.00	0	58	0	58	n	0.04	1	24	1	24	n	0.00	0	39	0	39	n	0.04	3	75	3	75	y	0.02	1	42	1	42	n	0.00	0	82	0	82	n	ENSMUSG00000040557.15	Mettl27	chr5	protein_coding	methyltransferase like 27
known_NIR_14344	chr5	135038693	135038836	+	135038069	135038836	A5SS	ENSMUST00000111216.8	known	0.95	81	4	81	4	y	0.97	85	3	85	3	y	0.97	111	3	111	3	y	0.98	90	2	90	2	y	0.95	122	6	122	6	y	0.97	62	2	62	2	y	0.96	131	6	131	6	y	0.91	52	5	52	5	y	0.99	82	1	82	1	n	1.00	116	0	116	0	n	0.97	113	3	113	3	y	0.97	107	3	107	3	y	ENSMUSG00000040532.15	Abhd11	chr5	protein_coding	abhydrolase domain containing 11
known_NIR_14345	chr5	135038693	135038865	+	135038693	135038836	A3SS	ENSMUST00000046999.12	known	0.00	0	81	0	81	n	0.00	0	85	0	85	n	0.00	0	111	0	111	n	0.00	0	90	0	90	n	0.03	4	122	4	122	y	0.02	1	62	1	62	n	0.00	0	131	0	131	n	0.00	0	52	0	52	n	0.00	0	82	0	82	n	0.03	3	116	3	116	y	0.00	0	113	0	113	n	0.00	0	107	0	107	n	ENSMUSG00000040532.15	Abhd11	chr5	protein_coding	abhydrolase domain containing 11
known_NIR_14346	chr5	135039914	135040095	+	135039914	135040064	A3SS	ENSMUST00000111216.8	known	0.01	2	173	2	173	y	0.02	3	195	3	195	y	0.02	6	279	6	279	y	0.01	1	181	1	181	n	0.02	6	239	6	239	y	0.04	4	93	4	93	y	0.02	4	256	4	256	y	0.01	1	116	1	116	n	0.03	4	150	4	150	y	0.03	6	226	6	226	y	0.03	5	177	5	177	y	0.00	0	185	0	185	n	ENSMUSG00000040532.15	Abhd11	chr5	protein_coding	abhydrolase domain containing 11
known_NIR_14347	chr5	135082492	135085696	-	135082492	135084882	5pMXE	ENSMUST00000147756.8	known	0.01	1	102	1	102	n	0.02	2	107	2	107	y	0.00	0	95	0	95	n	0.00	0	94	0	94	n	0.00	0	99	0	99	n	0.00	0	40	0	40	n	0.00	0	124	0	124	n	0.00	0	42	0	42	n	0.00	0	77	0	77	n	0.00	0	122	0	122	n	0.00	0	104	0	104	n	0.00	0	106	0	106	n	ENSMUSG00000005378.18	Bud23	chr5	protein_coding	BUD23, rRNA methyltransferase and ribosome maturation factor
known_NIR_14348	chr5	135082492	135085696	-	135085238	135085696	A3SS&ES	ENSMUST00000129691.8	known	0.01	1	109	1	109	n	0.02	2	115	2	115	y	0.00	0	93	0	93	n	0.00	0	92	0	92	n	0.00	0	128	0	128	n	0.00	0	45	0	45	n	0.00	0	131	0	131	n	0.00	0	45	0	45	n	0.00	0	98	0	98	n	0.00	0	100	0	100	n	0.00	0	95	0	95	n	0.00	0	93	0	93	n	ENSMUSG00000005378.18	Bud23	chr5	protein_coding	BUD23, rRNA methyltransferase and ribosome maturation factor
known_NIR_14349	chr5	135082492;135085238	135084882;135085696	-	135082492	135085696	cassetteExon	ENSMUST00000111205.8	known	0.99	105.5	1	102;109	1	n	0.98	111.0	2	107;115	2	y	1.00	94.0	0	95;93	0	n	1.00	93.0	0	94;92	0	n	1.00	113.5	0	99;128	0	n	1.00	42.5	0	40;45	0	n	1.00	127.5	0	124;131	0	n	1.00	43.5	0	42;45	0	n	1.00	87.5	0	77;98	0	n	1.00	111.0	0	122;100	0	n	1.00	99.5	0	104;95	0	n	1.00	99.5	0	106;93	0	n	ENSMUSG00000005378.18	Bud23	chr5	protein_coding	BUD23, rRNA methyltransferase and ribosome maturation factor
known_NIR_14350	chr5	135085781	135086466	-	135085781	135086474	A5SS	ENSMUST00000085984.11	known	0.00	0	93	0	93	n	0.00	0	79	0	79	n	0.00	0	83	0	83	n	0.02	2	93	2	93	y	0.00	0	113	0	113	n	0.00	0	43	0	43	n	0.01	1	98	1	98	n	0.00	0	44	0	44	n	0.00	0	83	0	83	n	0.00	0	109	0	109	n	0.00	0	84	0	84	n	0.00	0	68	0	68	n	ENSMUSG00000005378.18	Bud23	chr5	protein_coding	BUD23, rRNA methyltransferase and ribosome maturation factor
known_NIR_14351	chr5	135089684	135090103	-	135089684;135090009	135089927;135090103	ES	ENSMUST00000085984.11	known	0.00	0	88.0	0	94;82	n	0.05	4	69.5	4	65;74	y	0.01	1	72.0	1	72;72	n	0.00	0	88.0	0	84;92	n	0.00	0	115.5	0	102;129	n	0.08	4	44.0	4	40;48	y	0.02	2	91.5	2	95;88	y	0.08	3	35.5	3	37;34	y	0.02	2	78.5	2	90;67	y	0.05	4	75.0	4	77;73	y	0.00	0	86.0	0	87;85	n	0.01	1	77.0	1	69;85	n	ENSMUSG00000005378.18	Bud23	chr5	protein_coding	BUD23, rRNA methyltransferase and ribosome maturation factor
known_NIR_14352	chr5	135090198	135092514	-	135090198	135092738	A5SS	ENSMUST00000085984.11	known	0.05	4	78	4	78	y	0.00	0	79	0	79	n	0.01	1	84	1	84	n	0.00	0	103	0	103	n	0.00	0	121	0	121	n	0.00	0	39	0	39	n	0.01	1	90	1	90	n	0.02	1	61	1	61	n	0.02	1	61	1	61	n	0.00	0	94	0	94	n	0.01	1	77	1	77	n	0.00	0	100	0	100	n	ENSMUSG00000005378.18	Bud23	chr5	protein_coding	BUD23, rRNA methyltransferase and ribosome maturation factor
known_NIR_14353	chr5	135136069	135142481	+	135118914	135142481	A5SS	ENSMUST00000202431.4	known	0.98	203	5	203	5	y	0.97	161	5	161	5	y	0.92	100	9	100	9	y	0.99	274	3	274	3	y	0.99	223	2	223	2	y	1.00	39	0	39	0	n	0.98	195	4	195	4	y	0.97	62	2	62	2	y	0.97	294	8	294	8	y	0.97	301	9	301	9	y	0.96	209	8	209	8	y	0.99	318	4	318	4	y	ENSMUSG00000005373.14	Mlxipl	chr5	protein_coding	MLX interacting protein-like
known_NIR_14354	chr5	135161715	135161935	+	135161715	135161930	A3SS	ENSMUST00000142385.8	known	0.80	24	6	24	6	y	0.86	18	3	18	3	y	1.00	8	0	8	0	n	0.84	16	3	16	3	y	0.82	31	7	31	7	y	0.86	6	1	6	1	n	0.86	19	3	19	3	y	0.80	8	2	8	2	y	0.90	35	4	35	4	y	0.94	29	2	29	2	y	0.82	18	4	18	4	y	0.76	22	7	22	7	y	ENSMUSG00000005373.14	Mlxipl	chr5	protein_coding	MLX interacting protein-like
known_NIR_14355	chr5	135161715	135161935	+	135161715	135161963	A3SS	ENSMUST00000153519.8	known	0.10	24	226	24	226	y	0.08	18	218	18	218	y	0.07	8	102	8	102	y	0.06	16	260	16	260	y	0.13	31	199	31	199	y	0.11	6	48	6	48	y	0.09	19	187	19	187	y	0.11	8	68	8	68	y	0.12	35	264	35	264	y	0.08	29	331	29	331	y	0.06	18	276	18	276	y	0.06	22	322	22	322	y	ENSMUSG00000005373.14	Mlxipl	chr5	protein_coding	MLX interacting protein-like
known_NIR_14356	chr5	135161715	135161963	+	135161715	135161930	A3SS	ENSMUST00000142385.8	known	0.97	226	6	226	6	y	0.99	218	3	218	3	y	1.00	102	0	102	0	n	0.99	260	3	260	3	y	0.97	199	7	199	7	y	0.98	48	1	48	1	n	0.98	187	3	187	3	y	0.97	68	2	68	2	y	0.99	264	4	264	4	y	0.99	331	2	331	2	y	0.99	276	4	276	4	y	0.98	322	7	322	7	y	ENSMUSG00000005373.14	Mlxipl	chr5	protein_coding	MLX interacting protein-like
known_NIR_14357	chr5	135162727	135162801	+	135162727	135162808	A3SS	ENSMUST00000153519.8	known	0.27	9	24	9	24	y	0.16	8	41	8	41	y	0.41	11	16	11	16	y	0.14	7	43	7	43	y	0.20	12	48	12	48	y	0.25	3	9	3	9	y	0.12	5	36	5	36	y	0.15	2	11	2	11	y	0.17	9	44	9	44	y	0.20	16	66	16	66	y	0.13	8	52	8	52	y	0.17	10	49	10	49	y	ENSMUSG00000005373.14	Mlxipl	chr5	protein_coding	MLX interacting protein-like
known_NIR_14358	chr5	135162727	135162801	+	135162727	135162848	A3SS	ENSMUST00000142385.8	known	0.03	9	351	9	351	y	0.02	8	403	8	403	y	0.07	11	139	11	139	y	0.02	7	431	7	431	y	0.03	12	358	12	358	y	0.03	3	87	3	87	y	0.01	5	348	5	348	y	0.02	2	91	2	91	y	0.02	9	414	9	414	y	0.03	16	565	16	565	y	0.01	8	536	8	536	y	0.02	10	544	10	544	y	ENSMUSG00000005373.14	Mlxipl	chr5	protein_coding	MLX interacting protein-like
known_NIR_14359	chr5	135162727	135162808	+	135162727	135162848	A3SS	ENSMUST00000142385.8	known	0.06	24	351	24	351	y	0.09	41	403	41	403	y	0.10	16	139	16	139	y	0.09	43	431	43	431	y	0.12	48	358	48	358	y	0.09	9	87	9	87	y	0.09	36	348	36	348	y	0.11	11	91	11	91	y	0.10	44	414	44	414	y	0.10	66	565	66	565	y	0.09	52	536	52	536	y	0.08	49	544	49	544	y	ENSMUSG00000005373.14	Mlxipl	chr5	protein_coding	MLX interacting protein-like
known_NIR_14360	chr5	135178718;135178993	135178844;135181789	+	135178718	135181789	cassetteExon	ENSMUST00000153183.8	known	0.02	0.5	23	0;1	23	n	0.00	0.0	12	0;0	12	n	0.04	3.0	80	4;2	80	y	0.00	0.0	43	0;0	43	n	0.01	0.5	46	1;0	46	n	0.02	1.0	45	2;0	45	n	0.01	0.5	45	0;1	45	n	0.00	0.0	33	0;0	33	n	0.08	2.0	23	0;4	23	n	0.01	0.5	34	0;1	34	n	0.09	2.0	21	2;2	21	y	0.05	1.0	20	0;2	20	n	ENSMUSG00000005374.14	Tbl2	chr5	protein_coding	transducin (beta)-like 2
known_NIR_14361	chr5	135197420	135199941	+	135197452	135199941	A5SS	ENSMUST00000031692.12	known	0.00	0	66	0	66	n	0.00	0	68	0	68	n	0.00	0	101	0	101	n	0.00	0	48	0	48	n	0.01	1	79	1	79	n	0.03	2	68	2	68	y	0.00	0	81	0	81	n	0.00	0	46	0	46	n	0.00	0	37	0	37	n	0.00	0	114	0	114	n	0.00	0	65	0	65	n	0.03	3	100	3	100	y	ENSMUSG00000029681.13	Bcl7b	chr5	protein_coding	B cell CLL/lymphoma 7B
known_NIR_14362	chr5	135200016	135202025	+	135200016	135205983	A3SS	ENSMUST00000031692.12	known	0.45	38	47	38	47	y	0.47	36	41	36	41	y	0.47	51	58	51	58	y	0.43	26	34	26	34	y	0.52	51	47	51	47	y	0.48	32	34	32	34	y	0.47	55	62	55	62	y	0.50	25	25	25	25	y	0.46	35	41	35	41	y	0.43	56	73	56	73	y	0.48	41	45	41	45	y	0.49	47	49	47	49	y	ENSMUSG00000029681.13	Bcl7b	chr5	protein_coding	B cell CLL/lymphoma 7B
known_NIR_14363	chr5	135399167	135400073	+	135399167	135400095	A3SS	ENSMUST00000000940.15	known	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	14	0	14	n	0.00	0	18	0	18	n	0.00	0	8	0	8	n	0.08	2	23	2	23	y	0.00	0	2	0	2	n	0.00	0	15	0	15	n	0.00	0	19	0	19	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	ENSMUSG00000000916.16	Nsun5	chr5	protein_coding	NOL1/NOP2/Sun domain family, member 5
known_NIR_14364	chr5	135400269	135400360	+	135400269	135400352	A3SS	ENSMUST00000000940.15	known	0.14	4	25	4	25	y	0.19	5	21	5	21	y	0.00	0	14	0	14	n	0.07	2	27	2	27	y	0.11	4	31	4	31	y	0.00	0	13	0	13	n	0.00	0	25	0	25	n	0.09	1	10	1	10	n	0.17	3	15	3	15	y	0.28	5	13	5	13	y	0.12	3	22	3	22	y	0.00	0	27	0	27	n	ENSMUSG00000000916.16	Nsun5	chr5	protein_coding	NOL1/NOP2/Sun domain family, member 5
known_NIR_14365	chr5	135403919	135404129	+	135403959	135404129	A5SS	ENSMUST00000000940.15	known	0.15	4	22	4	22	y	0.17	6	30	6	30	y	0.00	0	20	0	20	n	0.00	0	21	0	21	n	0.30	11	26	11	26	y	0.10	1	9	1	9	n	0.14	4	24	4	24	y	0.00	0	9	0	9	n	0.09	2	21	2	21	y	0.12	4	29	4	29	y	0.15	4	22	4	22	y	0.11	4	33	4	33	y	ENSMUSG00000000916.16	Nsun5	chr5	protein_coding	NOL1/NOP2/Sun domain family, member 5
known_NIR_14366	chr5	135661772	135664849	+	135661772	135663958	3pMXE	ENSMUST00000144633.2	known	0.64	25	14	25	14	y	0.81	34	8	34	8	y	0.83	48	10	48	10	y	0.78	36	10	36	10	y	0.75	53	18	53	18	y	0.81	38	9	38	9	y	0.79	38	10	38	10	y	0.68	27	13	27	13	y	0.79	19	5	19	5	y	0.79	41	11	41	11	y	0.82	31	7	31	7	y	0.92	35	3	35	3	y	ENSMUSG00000039917.11	Rhbdd2	chr5	protein_coding	rhomboid domain containing 2
known_NIR_14367	chr5	135661772	135664849	+	135664077	135664849	5pMXE	ENSMUST00000199368.2	known	0.81	25	6	25	6	y	0.87	34	5	34	5	y	0.87	48	7	48	7	y	0.80	36	9	36	9	y	0.87	53	8	53	8	y	0.84	38	7	38	7	y	0.88	38	5	38	5	y	0.87	27	4	27	4	y	0.86	19	3	19	3	y	0.87	41	6	41	6	y	0.91	31	3	31	3	y	0.88	35	5	35	5	y	ENSMUSG00000039917.11	Rhbdd2	chr5	protein_coding	rhomboid domain containing 2
known_NIR_14368	chr5	135661772	135666327	+	135661772	135663958	A3SS&ES	ENSMUST00000136748.6	known	0.12	2	14	2	14	y	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.09	1	10	1	10	n	0.00	0	18	0	18	n	0.00	0	9	0	9	n	0.17	2	10	2	10	y	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	ENSMUSG00000039917.11	Rhbdd2	chr5	protein_coding	rhomboid domain containing 2
known_NIR_14369	chr5	135661772	135666327	+	135661772	135664849	A3SS&ES	ENSMUST00000043707.7	known	0.07	2	25	2	25	y	0.00	0	34	0	34	n	0.00	0	48	0	48	n	0.03	1	36	1	36	n	0.00	0	53	0	53	n	0.00	0	38	0	38	n	0.05	2	38	2	38	y	0.00	0	27	0	27	n	0.00	0	19	0	19	n	0.00	0	41	0	41	n	0.00	0	31	0	31	n	0.00	0	35	0	35	n	ENSMUSG00000039917.11	Rhbdd2	chr5	protein_coding	rhomboid domain containing 2
known_NIR_14370	chr5	135661772;135664077	135663958;135664849	+	135661772	135664849	cassetteExon	ENSMUST00000043707.7	known	0.29	10.0	25	14;6	25	y	0.16	6.5	34	8;5	34	y	0.15	8.5	48	10;7	48	y	0.21	9.5	36	10;9	36	y	0.20	13.0	53	18;8	53	y	0.17	8.0	38	9;7	38	y	0.16	7.5	38	10;5	38	y	0.24	8.5	27	13;4	27	y	0.17	4.0	19	5;3	19	y	0.17	8.5	41	11;6	41	y	0.14	5.0	31	7;3	31	y	0.10	4.0	35	3;5	35	y	ENSMUSG00000039917.11	Rhbdd2	chr5	protein_coding	rhomboid domain containing 2
known_NIR_14371	chr5	135668094	135669102	+	135668094	135671884	A3SS	ENSMUST00000043707.7	known	0.00	0	35	0	35	n	0.00	0	53	0	53	n	0.05	3	59	3	59	y	0.00	0	39	0	39	n	0.01	1	70	1	70	n	0.00	0	49	0	49	n	0.00	0	85	0	85	n	0.02	1	43	1	43	n	0.00	0	23	0	23	n	0.00	0	66	0	66	n	0.00	0	53	0	53	n	0.00	0	50	0	50	n	ENSMUSG00000039917.11	Rhbdd2	chr5	protein_coding	rhomboid domain containing 2
known_NIR_14372	chr5	135703515	135744726	+	135698970	135744726	A5SS	ENSMUST00000153500.8	known	1.00	23	0	23	0	n	1.00	13	0	13	0	n	1.00	23	0	23	0	n	1.00	23	0	23	0	n	1.00	22	0	22	0	n	1.00	17	0	17	0	n	0.96	25	1	25	1	n	1.00	12	0	12	0	n	1.00	8	0	8	0	n	0.93	25	2	25	2	y	1.00	12	0	12	0	n	1.00	21	0	21	0	n	ENSMUSG00000005514.15	Por	chr5	protein_coding	P450 (cytochrome) oxidoreductase
known_NIR_14373	chr5	135703515	135744726	+	135703515	135713574	3pMXE	ENSMUST00000150058.2	known	1.00	23	0	23	0	n	1.00	13	0	13	0	n	0.96	23	1	23	1	n	1.00	23	0	23	0	n	1.00	22	0	22	0	n	1.00	17	0	17	0	n	1.00	25	0	25	0	n	1.00	12	0	12	0	n	1.00	8	0	8	0	n	0.96	25	1	25	1	n	0.80	12	3	12	3	y	1.00	21	0	21	0	n	ENSMUSG00000005514.15	Por	chr5	protein_coding	P450 (cytochrome) oxidoreductase
known_NIR_14374	chr5	135718106	135744726	+	135698970	135744726	A5SS	ENSMUST00000153500.8	known	1.00	306	0	306	0	n	1.00	214	0	214	0	n	1.00	287	0	287	0	n	1.00	506	0	506	0	n	1.00	470	0	470	0	n	1.00	207	0	207	0	n	1.00	424	1	424	1	n	1.00	155	0	155	0	n	1.00	278	0	278	0	n	0.99	353	2	353	2	y	1.00	279	0	279	0	n	1.00	447	0	447	0	n	ENSMUSG00000005514.15	Por	chr5	protein_coding	P450 (cytochrome) oxidoreductase
known_NIR_14375	chr5	135718106	135744726	+	135703515	135744726	A5SS	ENSMUST00000153515.8	known	0.93	306	23	306	23	y	0.94	214	13	214	13	y	0.93	287	23	287	23	y	0.96	506	23	506	23	y	0.96	470	22	470	22	y	0.92	207	17	207	17	y	0.94	424	25	424	25	y	0.93	155	12	155	12	y	0.97	278	8	278	8	y	0.93	353	25	353	25	y	0.96	279	12	279	12	y	0.96	447	21	447	21	y	ENSMUSG00000005514.15	Por	chr5	protein_coding	P450 (cytochrome) oxidoreductase
known_NIR_14376	chr5	135959803	135963177	-	135940505	135963177	A3SS	ENSMUST00000198270.2	known	0.00	0	105	0	105	n	0.05	3	61	3	61	y	0.06	9	149	9	149	y	0.01	1	131	1	131	n	0.05	8	155	8	155	y	0.09	7	69	7	69	y	0.05	7	130	7	130	y	0.03	3	89	3	89	y	0.03	3	102	3	102	y	0.08	11	132	11	132	y	0.03	3	91	3	91	y	0.02	2	110	2	110	y	ENSMUSG00000051391.10	Ywhag	chr5	protein_coding	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
known_NIR_14377	chr5	135990062	135991054	-	135990062	135990743	A5SS&ES	ENSMUST00000111153.8	known	0.00	0	15	0	15	n	0.20	2	8	2	8	y	0.12	2	15	2	15	y	0.00	0	11	0	11	n	0.06	1	17	1	17	n	0.06	1	15	1	15	n	0.00	0	16	0	16	n	0.17	2	10	2	10	y	0.00	0	13	0	13	n	0.11	2	17	2	17	y	0.00	0	11	0	11	n	0.00	0	5	0	5	n	ENSMUSG00000029699.14	Ssc4d	chr5	protein_coding	scavenger receptor cysteine rich family, 4 domains
known_NIR_14378	chr5	135990062	135991054	-	135990062;135990820	135990743;135991054	ES	ENSMUST00000054895.4	known	0.00	0	14.0	0	15;13	n	0.25	2	6.0	2	8;4	y	0.15	2	11.5	2	15;8	y	0.00	0	10.5	0	11;10	n	0.06	1	14.5	1	17;12	n	0.09	1	10.5	1	15;6	n	0.00	0	11.0	0	16;6	n	0.14	2	12.0	2	10;14	y	0.00	0	10.0	0	13;7	n	0.14	2	12.0	2	17;7	y	0.00	0	9.0	0	11;7	n	0.00	0	9.0	0	5;13	n	ENSMUSG00000029699.14	Ssc4d	chr5	protein_coding	scavenger receptor cysteine rich family, 4 domains
known_NIR_14379	chr5	136050712	136057353	+	136050712	136055324	A3SS&ES	ENSMUST00000005072.10	known	0.23	3	10	3	10	y	0.00	0	9	0	9	n	0.20	1	4	1	4	n	0.33	2	4	2	4	n	0.17	3	15	3	15	y	0.00	0	8	0	8	n	0.17	1	5	1	5	n	0.08	1	11	1	11	n	0.20	1	4	1	4	n	0.33	5	10	5	10	y	0.70	7	3	7	3	y	0.38	3	5	3	5	n	ENSMUSG00000004947.16	Dtx2	chr5	protein_coding	deltex 2, E3 ubiquitin ligase
known_NIR_14380	chr5	136050712	136057353	+	136050712;136055461	136055324;136057353	ES	ENSMUST00000111142.9	known	0.22	3	10.5	3	10;11	y	0.00	0	8.0	0	9;7	n	0.11	1	8.5	1	4;13	n	0.25	2	6.0	2	4;8	y	0.16	3	15.5	3	15;16	y	0.00	0	7.0	0	8;6	n	0.15	1	5.5	1	5;6	n	0.12	1	7.0	1	11;3	n	0.13	1	6.5	1	4;9	n	0.36	5	9.0	5	10;8	y	0.64	7	4.0	7	3;5	y	0.35	3	5.5	3	5;6	y	ENSMUSG00000004947.16	Dtx2	chr5	protein_coding	deltex 2, E3 ubiquitin ligase
known_NIR_14381	chr5	136145659	136150943	+	136145659;136148938	136148849;136150943	ES	ENSMUST00000111127.8	known	0.00	1	215.0	1	223;207	n	0.01	2	194.5	2	200;189	y	0.00	0	176.0	0	194;158	n	0.01	2	186.0	2	209;163	y	0.01	2	215.5	2	235;196	y	0.00	0	113.0	0	112;114	n	0.00	0	249.0	0	269;229	n	0.00	0	109.0	0	123;95	n	0.00	0	171.0	0	181;161	n	0.01	4	264.5	4	281;248	y	0.00	0	187.5	0	195;180	n	0.00	0	203.5	0	216;191	n	ENSMUSG00000039771.14	Polr2j	chr5	protein_coding	polymerase (RNA) II (DNA directed) polypeptide J
known_NIR_14382	chr5	136165148	136168192	+	136165148	136168316	A3SS	ENSMUST00000136634.8	known	0.75	6	2	6	2	n	0.50	4	4	4	4	n	1.00	5	0	5	0	n	0.88	7	1	7	1	n	0.94	17	1	17	1	n	1.00	6	0	6	0	n	1.00	4	0	4	0	n	1.00	4	0	4	0	n	0.75	3	1	3	1	n	1.00	8	0	8	0	n	1.00	11	0	11	0	n	0.58	7	5	7	5	y	ENSMUSG00000039754.11	Alkbh4	chr5	protein_coding	alkB homolog 4, lysine demethylase
known_NIR_14383	chr5	136218473	136223151	-	136218473;136220839	136220754;136223151	ES	ENSMUST00000151786.8	known	0.06	2	30.0	2	27;33	y	0.00	0	31.5	0	31;32	n	0.03	1	35.5	1	38;33	n	0.00	0	30.0	0	31;29	n	0.00	0	42.5	0	47;38	n	0.00	0	20.5	0	24;17	n	0.02	1	54.0	1	53;55	n	0.00	0	18.5	0	18;19	n	0.04	1	22.5	1	22;23	n	0.00	0	43.0	0	41;45	n	0.00	0	38.5	0	42;35	n	0.02	1	45.5	1	42;49	n	ENSMUSG00000039737.12	Prkrip1	chr5	protein_coding	Prkr interacting protein 1 (IL11 inducible)
known_NIR_14384	chr5	136342168	136343161	-	136286894	136343161	A3SS	ENSMUST00000175998.8	known	0.00	0	29	0	29	n	0.00	0	31	0	31	n	0.03	1	29	1	29	n	0.09	4	39	4	39	y	0.05	3	52	3	52	y	0.11	3	25	3	25	y	0.05	2	42	2	42	y	0.00	0	24	0	24	n	0.00	0	27	0	27	n	0.00	0	58	0	58	n	0.00	0	37	0	37	n	0.00	0	38	0	38	n	ENSMUSG00000029705.18	Cux1	chr5	protein_coding	cut-like homeobox 1
known_NIR_14385	chr5	136355786	136361478	-	136355792	136361478	A3SS	ENSMUST00000176216.9	known	0.59	23	16	23	16	y	0.73	16	6	16	6	y	0.65	11	6	11	6	y	0.77	33	10	33	10	y	0.67	26	13	26	13	y	0.69	11	5	11	5	y	0.50	18	18	18	18	y	0.81	35	8	35	8	y	0.70	19	8	19	8	y	0.74	35	12	35	12	y	0.56	15	12	15	12	y	0.72	21	8	21	8	y	ENSMUSG00000029705.18	Cux1	chr5	protein_coding	cut-like homeobox 1
known_NIR_14386	chr5	136355786	136361478	-	136355864	136361478	A3SS	ENSMUST00000175998.8	known	0.74	23	8	23	8	y	0.67	16	8	16	8	y	0.92	11	1	11	1	n	0.89	33	4	33	4	y	0.70	26	11	26	11	y	0.69	11	5	11	5	y	0.75	18	6	18	6	y	0.80	35	9	35	9	y	0.79	19	5	19	5	y	0.73	35	13	35	13	y	0.47	15	17	15	17	y	0.70	21	9	21	9	y	ENSMUSG00000029705.18	Cux1	chr5	protein_coding	cut-like homeobox 1
known_NIR_14387	chr5	136355792	136361478	-	136355864	136361478	A3SS	ENSMUST00000175998.8	known	0.67	16	8	16	8	y	0.43	6	8	6	8	y	0.86	6	1	6	1	n	0.71	10	4	10	4	y	0.54	13	11	13	11	y	0.50	5	5	5	5	y	0.75	18	6	18	6	y	0.47	8	9	8	9	y	0.62	8	5	8	5	y	0.48	12	13	12	13	y	0.41	12	17	12	17	y	0.47	8	9	8	9	y	ENSMUSG00000029705.18	Cux1	chr5	protein_coding	cut-like homeobox 1
known_NIR_14388	chr5	136514705	136594234	-	136514705	136596032	A5SS	ENSMUST00000176216.9	known	0.00	0	28	0	28	n	0.00	0	13	0	13	n	0.00	0	32	0	32	n	0.03	2	57	2	57	y	0.00	0	58	0	58	n	0.00	0	33	0	33	n	0.04	2	43	2	43	y	0.00	0	32	0	32	n	0.00	0	41	0	41	n	0.02	1	43	1	43	n	0.04	1	27	1	27	n	0.00	0	38	0	38	n	ENSMUSG00000029705.18	Cux1	chr5	protein_coding	cut-like homeobox 1
known_NIR_14389	chr5	136982444	136993947	+	136982444;136991985	136991853;136993947	ES	ENSMUST00000111094.8	known	0.01	2	212.5	2	29;396	y	0.00	1	221.5	1	34;409	n	0.00	0	271.5	0	7;536	n	0.00	0	210.0	0	34;386	n	0.01	2	246.5	2	25;468	y	0.00	0	136.5	0	15;258	n	0.00	1	265.0	1	44;486	n	0.00	0	140.5	0	14;267	n	0.01	1	155.0	1	21;289	n	0.00	0	243.0	0	34;452	n	0.00	0	246.5	0	56;437	n	0.00	0	207.5	0	37;378	n	ENSMUSG00000019054.14	Fis1	chr5	protein_coding	fission, mitochondrial 1
known_NIR_14390	chr5	136982444	136993947	+	136991985	136993947	5pMXE	ENSMUST00000152658.2	known	0.01	2	396	2	396	y	0.00	1	409	1	409	n	0.00	0	536	0	536	n	0.00	0	386	0	386	n	0.00	2	468	2	468	y	0.00	0	258	0	258	n	0.00	1	486	1	486	n	0.00	0	267	0	267	n	0.00	1	289	1	289	n	0.00	0	452	0	452	n	0.00	0	437	0	437	n	0.00	0	378	0	378	n	ENSMUSG00000019054.14	Fis1	chr5	protein_coding	fission, mitochondrial 1
known_NIR_14391	chr5	136991082	136991853	+	136982444	136991853	A5SS	ENSMUST00000111094.8	known	0.89	226	29	226	29	y	0.88	250	34	250	34	y	0.98	278	7	278	7	y	0.87	228	34	228	34	y	0.93	334	25	334	25	y	0.91	148	15	148	15	y	0.88	311	44	311	44	y	0.92	170	14	170	14	y	0.89	163	21	163	21	y	0.90	320	34	320	34	y	0.83	282	56	282	56	y	0.87	248	37	248	37	y	ENSMUSG00000019054.14	Fis1	chr5	protein_coding	fission, mitochondrial 1
known_NIR_14392	chr5	136991985;136993249	136993063;136993947	+	136991985	136993947	cassetteExon	ENSMUST00000111094.8	known	0.01	3.0	396	2;4	396	y	0.01	3.0	409	6;0	409	n	0.01	4.5	536	4;5	536	y	0.02	6.5	386	6;7	386	y	0.01	4.0	468	3;5	468	y	0.01	2.0	258	1;3	258	n	0.01	4.5	486	2;7	486	y	0.01	1.5	267	2;1	267	n	0.02	5.5	289	4;7	289	y	0.01	6.5	452	4;9	452	y	0.01	4.0	437	5;3	437	y	0.01	3.5	378	5;2	378	y	ENSMUSG00000019054.14	Fis1	chr5	protein_coding	fission, mitochondrial 1
known_NIR_14393	chr5	137013903	137015665	-	137013903	137014980	A5SS&ES	ENSMUST00000137272.2	known	0.43	20	27	20	27	y	0.38	11	18	11	18	y	0.30	15	35	15	35	y	0.50	26	26	26	26	y	0.51	31	30	31	30	y	0.64	16	9	16	9	y	0.39	22	34	22	34	y	0.56	10	8	10	8	y	0.48	27	29	27	29	y	0.46	24	28	24	28	y	0.38	19	31	19	31	y	0.45	22	27	22	27	y	ENSMUSG00000059518.15	Znhit1	chr5	protein_coding	zinc finger, HIT domain containing 1
known_NIR_14394	chr5	137013903	137015665	-	137013903	137016343	A5SS	ENSMUST00000156963.8	known	0.17	20	101	20	101	y	0.08	11	133	11	133	y	0.09	15	146	15	146	y	0.20	26	104	26	104	y	0.19	31	133	31	133	y	0.17	16	80	16	80	y	0.13	22	146	22	146	y	0.12	10	73	10	73	y	0.23	27	91	27	91	y	0.16	24	124	24	124	y	0.14	19	118	19	118	y	0.16	22	112	22	112	y	ENSMUSG00000059518.15	Znhit1	chr5	protein_coding	zinc finger, HIT domain containing 1
known_NIR_14395	chr5	137013903;137015109	137014980;137015665	-	137013903	137015665	cassetteExon	ENSMUST00000085941.12	known	0.40	13.5	20	27;0	20	n	0.46	9.5	11	18;1	11	n	0.55	18.0	15	35;1	15	n	0.36	14.5	26	26;3	26	y	0.35	17.0	31	30;4	31	y	0.24	5.0	16	9;1	16	n	0.46	18.5	22	34;3	22	y	0.29	4.0	10	8;0	10	n	0.35	14.5	27	29;0	27	n	0.41	16.5	24	28;5	24	y	0.46	16.5	19	31;2	19	y	0.41	15.5	22	27;4	22	y	ENSMUSG00000059518.15	Znhit1	chr5	protein_coding	zinc finger, HIT domain containing 1
known_NIR_14396	chr5	137013903;137015109	137014980;137016343	-	137013903	137016343	cassetteExon	ENSMUST00000156963.8	known	0.15	18.0	101	27;9	101	y	0.08	12.0	133	18;6	133	y	0.14	23.5	146	35;12	146	y	0.16	19.5	104	26;13	104	y	0.18	28.5	133	30;27	133	y	0.09	7.5	80	9;6	80	y	0.13	21.0	146	34;8	146	y	0.09	7.0	73	8;6	73	y	0.18	20.0	91	29;11	91	y	0.13	18.5	124	28;9	124	y	0.18	26.0	118	31;21	118	y	0.15	19.5	112	27;12	112	y	ENSMUSG00000059518.15	Znhit1	chr5	protein_coding	zinc finger, HIT domain containing 1
known_NIR_14397	chr5	137015109	137016343	-	137015109	137015665	5pMXE	ENSMUST00000111091.8	known	1.00	9	0	9	0	n	0.86	6	1	6	1	n	0.92	12	1	12	1	n	0.81	13	3	13	3	y	0.87	27	4	27	4	y	0.86	6	1	6	1	n	0.73	8	3	8	3	y	1.00	6	0	6	0	n	1.00	11	0	11	0	n	0.64	9	5	9	5	y	0.91	21	2	21	2	y	0.75	12	4	12	4	y	ENSMUSG00000059518.15	Znhit1	chr5	protein_coding	zinc finger, HIT domain containing 1
known_NIR_14398	chr5	137017555	137017737	+	137017589	137017737	A5SS	ENSMUST00000004968.11	known	0.09	4	43	4	43	y	0.00	0	32	0	32	n	0.05	5	99	5	99	y	0.12	5	38	5	38	y	0.05	4	78	4	78	y	0.13	5	33	5	33	y	0.09	5	48	5	48	y	0.00	0	36	0	36	n	0.07	2	27	2	27	y	0.00	0	61	0	61	n	0.02	1	40	1	40	n	0.00	0	55	0	55	n	ENSMUSG00000004846.11	Plod3	chr5	protein_coding	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3
known_NIR_14399	chr5	137019938	137020185	+	137019938	137020154	A3SS	ENSMUST00000004968.11	known	0.04	2	50	2	50	y	0.00	0	59	0	59	n	0.00	0	97	0	97	n	0.02	1	53	1	53	n	0.01	1	93	1	93	n	0.02	1	53	1	53	n	0.00	0	59	0	59	n	0.00	0	37	0	37	n	0.00	0	28	0	28	n	0.01	1	67	1	67	n	0.00	0	61	0	61	n	0.00	0	48	0	48	n	ENSMUSG00000004846.11	Plod3	chr5	protein_coding	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3
known_NIR_14400	chr5	137072096	137073834	-	137072096	137074862	A5SS	ENSMUST00000111080.8	known	0.02	1	63	1	63	n	0.00	0	67	0	67	n	0.01	1	83	1	83	n	0.01	1	86	1	86	n	0.03	3	117	3	117	y	0.00	0	61	0	61	n	0.00	0	98	0	98	n	0.00	0	46	0	46	n	0.01	1	70	1	70	n	0.00	0	95	0	95	n	0.02	1	65	1	65	n	0.02	1	58	1	58	n	ENSMUSG00000004849.15	Ap1s1	chr5	protein_coding	adaptor protein complex AP-1, sigma 1
known_NIR_14401	chr5	137072096	137074367	-	137072096	137074862	A5SS	ENSMUST00000111080.8	known	0.00	0	63	0	63	n	0.03	2	67	2	67	y	0.02	2	83	2	83	y	0.02	2	86	2	86	y	0.03	3	117	3	117	y	0.03	2	61	2	61	y	0.02	2	98	2	98	y	0.00	0	46	0	46	n	0.03	2	70	2	70	y	0.03	3	95	3	95	y	0.04	3	65	3	65	y	0.03	2	58	2	58	y	ENSMUSG00000004849.15	Ap1s1	chr5	protein_coding	adaptor protein complex AP-1, sigma 1
known_NIR_14402	chr5	137143773	137144966	-	137143807	137144966	A3SS	ENSMUST00000054384.6	known	0.71	5	2	5	2	n	0.80	4	1	4	1	n	0.67	14	7	14	7	y	0.75	12	4	12	4	y	0.67	8	4	8	4	y	0.67	2	1	2	1	n	0.50	5	5	5	5	y	0.89	8	1	8	1	n	0.67	2	1	2	1	n	0.89	8	1	8	1	n	1.00	3	0	3	0	n	1.00	7	0	7	0	n	ENSMUSG00000043279.10	Trim56	chr5	protein_coding	tripartite motif-containing 56
known_NIR_14403	chr5	137294354	137294480	-	137294375	137294480	A3SS	ENSMUST00000040873.12	known	0.36	38	68	38	68	y	0.36	42	76	42	76	y	0.32	44	93	44	93	y	0.44	40	50	40	50	y	0.34	48	92	48	92	y	0.31	16	36	16	36	y	0.38	43	69	43	69	y	0.24	12	37	12	37	y	0.35	27	51	27	51	y	0.46	48	56	48	56	y	0.33	38	76	38	76	y	0.38	47	78	47	78	y	ENSMUSG00000037364.13	Srrt	chr5	protein_coding	serrate RNA effector molecule homolog (Arabidopsis)
known_NIR_14404	chr5	137294569	137294729	-	137294581	137294729	A3SS	ENSMUST00000040873.12	known	0.11	13	106	13	106	y	0.13	16	106	16	106	y	0.07	10	132	10	132	y	0.17	17	82	17	82	y	0.09	10	96	10	96	y	0.16	7	38	7	38	y	0.11	14	115	14	115	y	0.19	13	57	13	57	y	0.21	22	82	22	82	y	0.14	22	140	22	140	y	0.16	23	118	23	118	y	0.20	24	97	24	97	y	ENSMUSG00000037364.13	Srrt	chr5	protein_coding	serrate RNA effector molecule homolog (Arabidopsis)
known_NIR_14405	chr5	137297142	137297820	-	137297145	137297820	A3SS	ENSMUST00000040873.12	known	0.02	2	81	2	81	y	0.00	0	75	0	75	n	0.08	10	121	10	121	y	0.00	0	60	0	60	n	0.05	5	102	5	102	y	0.00	0	53	0	53	n	0.01	1	77	1	77	n	0.05	3	54	3	54	y	0.00	0	58	0	58	n	0.00	0	89	0	89	n	0.01	1	72	1	72	n	0.00	0	94	0	94	n	ENSMUSG00000037364.13	Srrt	chr5	protein_coding	serrate RNA effector molecule homolog (Arabidopsis)
known_NIR_14406	chr5	137298675	137300388	-	137298675	137299580	A5SS	ENSMUST00000199473.2	known	0.85	22	4	22	4	y	0.81	26	6	26	6	y	0.88	53	7	53	7	y	0.92	33	3	33	3	y	0.80	39	10	39	10	y	0.83	19	4	19	4	y	0.84	31	6	31	6	y	0.89	17	2	17	2	y	0.84	26	5	26	5	y	1.00	33	0	33	0	n	0.93	38	3	38	3	y	0.94	50	3	50	3	y	ENSMUSG00000037364.13	Srrt	chr5	protein_coding	serrate RNA effector molecule homolog (Arabidopsis)
known_NIR_14407	chr5	137298675;137299909	137299580;137300388	-	137298675	137300388	cassetteExon	ENSMUST00000040873.12	known	0.14	3.5	22	4;3	22	y	0.12	3.5	26	6;1	26	n	0.07	4.0	53	7;1	53	n	0.06	2.0	33	3;1	33	n	0.11	5.0	39	10;0	39	n	0.10	2.0	19	4;0	19	n	0.09	3.0	31	6;0	31	n	0.06	1.0	17	2;0	17	n	0.10	3.0	26	5;1	26	n	0.03	1.0	33	0;2	33	n	0.05	2.0	38	3;1	38	n	0.04	2.0	50	3;1	50	n	ENSMUSG00000037364.13	Srrt	chr5	protein_coding	serrate RNA effector molecule homolog (Arabidopsis)
known_NIR_14408	chr5	137300935;137301139	137301042;137305308	-	137300935;137301302	137301174;137305308	MXE	ENSMUST00000040873.12	known	0.00	0.0	50.5	0;0	45;56	n	0.03	1.5	46.5	2;1	41;52	n	0.04	3.5	80.5	5;2	89;72	y	0.01	0.5	61.5	1;0	59;64	n	0.03	2.5	74.5	5;0	78;71	n	0.00	0.0	44.5	0;0	42;47	n	0.04	2.0	44.5	2;2	40;49	y	0.04	2.0	45.0	2;2	35;55	y	0.01	0.5	46.0	1;0	41;51	n	0.00	0.0	63.5	0;0	62;65	n	0.00	0.0	41.0	0;0	41;41	n	0.01	1.0	66.0	2;0	60;72	n	ENSMUSG00000037364.13	Srrt	chr5	protein_coding	serrate RNA effector molecule homolog (Arabidopsis)
known_NIR_14409	chr5	137359728	137360625	+	137359728	137360652	A3SS	ENSMUST00000061244.15	known	0.06	2	33	2	33	y	0.04	1	23	1	23	n	0.09	3	32	3	32	y	0.14	4	24	4	24	y	0.04	2	43	2	43	y	0.05	1	18	1	18	n	0.03	1	28	1	28	n	0.07	2	27	2	27	y	0.00	0	27	0	27	n	0.16	7	36	7	36	y	0.07	2	28	2	28	y	0.08	3	35	3	35	y	ENSMUSG00000029710.16	Ephb4	chr5	protein_coding	Eph receptor B4
known_NIR_14410	chr5	137529102	137529792	-	137529102	137531401	A5SS	ENSMUST00000031726.15	known	0.07	2	27	2	27	y	0.03	1	33	1	33	n	0.00	0	46	0	46	n	0.00	0	36	0	36	n	0.03	1	34	1	34	n	0.00	0	25	0	25	n	0.00	0	41	0	41	n	0.00	0	27	0	27	n	0.00	0	21	0	21	n	0.00	0	50	0	50	n	0.00	0	40	0	40	n	0.06	2	32	2	32	y	ENSMUSG00000029713.16	Gnb2	chr5	protein_coding	guanine nucleotide binding protein (G protein), beta 2
known_NIR_14411	chr5	137568215	137568334	+	137568196	137568334	A5SS	ENSMUST00000031729.13	known	0.15	26	153	26	153	y	0.13	20	136	20	136	y	0.17	37	184	37	184	y	0.20	55	227	55	227	y	0.16	56	284	56	284	y	0.26	30	87	30	87	y	0.17	44	215	44	215	y	0.15	28	156	28	156	y	0.16	38	206	38	206	y	0.14	51	307	51	307	y	0.17	36	177	36	177	y	0.18	55	243	55	243	y	ENSMUSG00000029716.14	Tfr2	chr5	protein_coding	transferrin receptor 2
known_NIR_14412	chr5	137568256	137568334	+	137568196	137568334	A5SS	ENSMUST00000031729.13	known	0.39	97	153	97	153	y	0.36	77	136	77	136	y	0.38	115	184	115	184	y	0.33	112	227	112	227	y	0.33	139	284	139	284	y	0.46	74	87	74	87	y	0.34	109	215	109	215	y	0.32	75	156	75	156	y	0.26	72	206	72	206	y	0.33	148	307	148	307	y	0.33	88	177	88	177	y	0.35	130	243	130	243	y	ENSMUSG00000029716.14	Tfr2	chr5	protein_coding	transferrin receptor 2
known_NIR_14413	chr5	137568256	137568334	+	137568215	137568334	A5SS	ENSMUST00000200190.5	known	0.79	97	26	97	26	y	0.79	77	20	77	20	y	0.76	115	37	115	37	y	0.67	112	55	112	55	y	0.71	139	56	139	56	y	0.71	74	30	74	30	y	0.71	109	44	109	44	y	0.73	75	28	75	28	y	0.65	72	38	72	38	y	0.74	148	51	148	51	y	0.71	88	36	88	36	y	0.70	130	55	130	55	y	ENSMUSG00000029716.14	Tfr2	chr5	protein_coding	transferrin receptor 2
known_NIR_14414	chr5	137569041	137569250	+	137568380	137569250	A5SS	ENSMUST00000198866.5	known	0.02	10	588	10	588	y	0.02	8	509	8	509	y	0.01	6	728	6	728	y	0.02	20	922	20	922	y	0.01	13	1042	13	1042	y	0.01	4	450	4	450	y	0.02	13	736	13	736	y	0.01	9	633	9	633	y	0.02	10	619	10	619	y	0.01	10	1024	10	1024	y	0.01	3	566	3	566	y	0.02	13	852	13	852	y	ENSMUSG00000029716.14	Tfr2	chr5	protein_coding	transferrin receptor 2
known_NIR_14415	chr5	137578548	137578911	+	137578548	137580851	A3SS	ENSMUST00000198866.5	known	0.01	12	1065	12	1065	y	0.02	21	1135	21	1135	y	0.03	31	1101	31	1101	y	0.01	13	1237	13	1237	y	0.01	22	1639	22	1639	y	0.03	17	663	17	663	y	0.02	25	1451	25	1451	y	0.02	14	818	14	818	y	0.01	15	998	15	998	y	0.02	27	1506	27	1506	y	0.01	14	1054	14	1054	y	0.02	25	1382	25	1382	y	ENSMUSG00000029716.14	Tfr2	chr5	protein_coding	transferrin receptor 2
known_NIR_14416	chr5	137598805	137598930	-	137598805	137599004	A5SS	ENSMUST00000037620.14	known	0.06	1	15	1	15	n	0.33	4	8	4	8	y	0.25	1	3	1	3	n	0.00	0	9	0	9	n	0.07	1	13	1	13	n	0.40	2	3	2	3	n	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	21	0	21	n	0.00	0	10	0	10	n	0.12	1	7	1	7	n	ENSMUSG00000037221.14	Mospd3	chr5	protein_coding	motile sperm domain containing 3
known_NIR_14417	chr5	137598805	137598930	-	137598805	137599253	A5SS	ENSMUST00000154708.8	known	0.17	1	5	1	5	n	0.31	4	9	4	9	y	1.00	1	0	1	0	n	0.00	0	7	0	7	n	0.25	1	3	1	3	n	0.67	2	1	2	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.12	1	7	1	7	n	ENSMUSG00000037221.14	Mospd3	chr5	protein_coding	motile sperm domain containing 3
known_NIR_14418	chr5	137598805	137599253	-	137598805	137599004	A5SS	ENSMUST00000037620.14	known	0.25	5	15	5	15	y	0.53	9	8	9	8	y	0.00	0	3	0	3	n	0.44	7	9	7	9	y	0.19	3	13	3	13	y	0.25	1	3	1	3	n	0.29	4	10	4	10	y	0.75	3	1	3	1	n	0.38	3	5	3	5	n	0.22	6	21	6	21	y	0.17	2	10	2	10	y	0.50	7	7	7	7	y	ENSMUSG00000037221.14	Mospd3	chr5	protein_coding	motile sperm domain containing 3
known_NIR_14419	chr5	137627688	137632111	+	137627688;137631978	137631834;137632111	ES	ENSMUST00000031734.16	known	0.00	0	27.0	0	24;30	n	0.00	0	11.0	0	11;11	n	0.05	2	37.0	2	27;47	y	0.00	0	22.0	0	14;30	n	0.00	0	29.5	0	20;39	n	0.00	0	9.5	0	10;9	n	0.04	1	21.5	1	17;26	n	0.00	0	18.0	0	19;17	n	0.00	0	24.0	0	24;24	n	0.00	0	27.0	0	22;32	n	0.00	0	18.0	0	18;18	n	0.00	0	25.0	0	20;30	n	ENSMUSG00000093445.8	Lrch4	chr5	protein_coding	leucine-rich repeats and calponin homology (CH) domain containing 4
known_NIR_14420	chr5	137636804	137637384	+	137636804;137637000	137636917;137637384	ES	ENSMUST00000031734.16	known	0.04	1	26.5	1	26;27	n	0.00	0	31.0	0	31;31	n	0.08	2	23.0	2	21;25	y	0.05	1	19.0	1	14;24	n	0.04	1	27.5	1	17;38	n	0.26	3	8.5	3	5;12	y	0.12	3	22.0	3	17;27	y	0.05	1	18.0	1	17;19	n	0.00	0	16.0	0	8;24	n	0.05	1	21.0	1	12;30	n	0.00	0	23.5	0	17;30	n	0.05	1	20.0	1	20;20	n	ENSMUSG00000093445.8	Lrch4	chr5	protein_coding	leucine-rich repeats and calponin homology (CH) domain containing 4
known_NIR_14421	chr5	137637917	137639027	+	137637917	137638210	A3SS	ENSMUST00000031734.16	known	0.30	8	19	8	19	y	0.19	5	21	5	21	y	0.21	6	23	6	23	y	0.09	3	29	3	29	y	0.27	12	32	12	32	y	0.32	7	15	7	15	y	0.25	8	24	8	24	y	0.41	9	13	9	13	y	0.45	9	11	9	11	y	0.19	6	25	6	25	y	0.24	6	19	6	19	y	0.18	6	27	6	27	y	ENSMUSG00000093445.8	Lrch4	chr5	protein_coding	leucine-rich repeats and calponin homology (CH) domain containing 4
known_NIR_14422	chr5	137653990	137658424	-	137653990	137661698	A5SS	ENSMUST00000198657.2	known	0.93	26	2	26	2	y	0.93	14	1	14	1	n	1.00	13	0	13	0	n	0.97	39	1	39	1	n	0.97	29	1	29	1	n	1.00	8	0	8	0	n	0.92	22	2	22	2	y	0.91	10	1	10	1	n	1.00	17	0	17	0	n	0.90	28	3	28	3	y	1.00	11	0	11	0	n	1.00	37	0	37	0	n	ENSMUSG00000029722.16	Agfg2	chr5	protein_coding	ArfGAP with FG repeats 2
known_NIR_14423	chr5	137653990	137661698	-	137653990	137659626	5pMXE	ENSMUST00000147518.2	known	0.04	2	46	2	46	y	0.04	1	25	1	25	n	0.00	0	29	0	29	n	0.02	1	54	1	54	n	0.02	1	56	1	56	n	0.00	0	13	0	13	n	0.05	2	41	2	41	y	0.07	1	13	1	13	n	0.00	0	39	0	39	n	0.04	3	67	3	67	y	0.00	0	67	0	67	n	0.00	0	50	0	50	n	ENSMUSG00000029722.16	Agfg2	chr5	protein_coding	ArfGAP with FG repeats 2
known_NIR_14424	chr5	137653990	137661698	-	137653990;137659754	137659626;137661698	ES	ENSMUST00000031736.16	known	0.05	2	41.5	2	46;37	y	0.03	1	28.5	1	25;32	n	0.00	0	27.5	0	29;26	n	0.02	1	53.5	1	54;53	n	0.02	1	61.0	1	56;66	n	0.00	0	14.0	0	13;15	n	0.05	2	36.5	2	41;32	y	0.08	1	11.5	1	13;10	n	0.00	0	41.5	0	39;44	n	0.04	3	68.5	3	67;70	y	0.00	0	60.5	0	67;54	n	0.00	0	53.5	0	50;57	n	ENSMUSG00000029722.16	Agfg2	chr5	protein_coding	ArfGAP with FG repeats 2
known_NIR_14425	chr5	137653990;137658456	137658424;137659626	-	137653990	137659626	cassetteExon	ENSMUST00000031736.16	known	0.37	26.5	46	26;27	46	y	0.35	13.5	25	14;13	25	y	0.30	12.5	29	13;12	29	y	0.40	36.5	54	39;34	54	y	0.37	32.5	56	29;36	56	y	0.40	8.5	13	8;9	13	y	0.36	23.0	41	22;24	41	y	0.46	11.0	13	10;12	13	y	0.32	18.5	39	17;20	39	y	0.29	27.0	67	28;26	67	y	0.16	13.0	67	11;15	67	y	0.39	32.5	50	37;28	50	y	ENSMUSG00000029722.16	Agfg2	chr5	protein_coding	ArfGAP with FG repeats 2
known_NIR_14426	chr5	137653990;137659751	137659626;137661698	-	137653990	137661698	cassetteExon	ENSMUST00000198657.2	known	0.93	25.0	2	46;4	2	y	0.95	18.5	1	25;12	1	n	1.00	16.0	0	29;3	0	n	0.97	31.5	1	54;9	1	n	0.97	31.5	1	56;7	1	n	1.00	7.5	0	13;2	0	n	0.92	24.5	2	41;8	2	y	0.88	7.0	1	13;1	1	n	1.00	22.0	0	39;5	0	n	0.93	39.0	3	67;11	3	y	1.00	36.0	0	67;5	0	n	1.00	27.5	0	50;5	0	n	ENSMUSG00000029722.16	Agfg2	chr5	protein_coding	ArfGAP with FG repeats 2
known_NIR_14427	chr5	137659751	137661698	-	137659754	137661698	A3SS	ENSMUST00000031736.16	known	0.10	4	37	4	37	y	0.27	12	32	12	32	y	0.10	3	26	3	26	y	0.15	9	53	9	53	y	0.10	7	66	7	66	y	0.12	2	15	2	15	y	0.20	8	32	8	32	y	0.09	1	10	1	10	n	0.10	5	44	5	44	y	0.14	11	70	11	70	y	0.08	5	54	5	54	y	0.08	5	57	5	57	y	ENSMUSG00000029722.16	Agfg2	chr5	protein_coding	ArfGAP with FG repeats 2
known_NIR_14428	chr5	137777483	137777564	+	137777159	137777564	A5SS	ENSMUST00000126126.8	known	0.97	31	1	31	1	n	1.00	38	0	38	0	n	0.95	21	1	21	1	n	1.00	34	0	34	0	n	0.94	29	2	29	2	y	1.00	19	0	19	0	n	1.00	29	0	29	0	n	1.00	7	0	7	0	n	1.00	37	0	37	0	n	0.98	45	1	45	1	n	0.96	43	2	43	2	y	0.95	42	2	42	2	y	ENSMUSG00000029725.11	Ppp1r35	chr5	protein_coding	protein phosphatase 1, regulatory subunit 35
known_NIR_14429	chr5	137781610	137784856	-	137781610	137782723	A5SS	ENSMUST00000031740.16	known	0.05	3	53	3	53	y	0.04	2	47	2	47	y	0.08	5	58	5	58	y	0.05	3	55	3	55	y	0.04	3	68	3	68	y	0.18	3	14	3	14	y	0.02	1	56	1	56	n	0.00	0	51	0	51	n	0.06	2	33	2	33	y	0.09	6	63	6	63	y	0.03	1	39	1	39	n	0.02	1	50	1	50	n	ENSMUSG00000029726.17	Mepce	chr5	protein_coding	methylphosphate capping enzyme
known_NIR_14430	chr5	137781610	137785657	-	137781610	137782723	5pMXE	ENSMUST00000031740.16	known	0.02	1	53	1	53	n	0.00	0	47	0	47	n	0.00	0	58	0	58	n	0.00	0	55	0	55	n	0.01	1	68	1	68	n	0.00	0	14	0	14	n	0.02	1	56	1	56	n	0.00	0	51	0	51	n	0.08	3	33	3	33	y	0.02	1	63	1	63	n	0.07	3	39	3	39	y	0.00	0	50	0	50	n	ENSMUSG00000029726.17	Mepce	chr5	protein_coding	methylphosphate capping enzyme
known_NIR_14431	chr5	137810362	137815720	+	137810362;137815238	137815155;137815720	ES	ENSMUST00000035852.14	known	0.18	2	9.0	2	9;9	y	0.62	5	3.0	5	3;3	y	0.00	0	3.0	0	6;0	n	0.32	4	8.5	4	8;9	y	0.32	3	6.5	3	8;5	y	1.00	1	0.0	1	0;0	n	0.42	4	5.5	4	7;4	y	0.32	3	6.5	3	6;7	y	0.76	8	2.5	8	3;2	y	0.37	5	8.5	5	11;6	y	0.33	3	6.0	3	6;6	y	0.50	4	4.0	4	5;3	y	ENSMUSG00000037108.14	Zcwpw1	chr5	protein_coding	zinc finger, CW type with PWWP domain 1
known_NIR_14432	chr5	137851317	137853140	-	137851450	137853140	A3SS	ENSMUST00000197914.5	known	1.00	9	0	9	0	n	1.00	11	0	11	0	n	1.00	4	0	4	0	n	0.50	2	2	2	2	n	0.91	10	1	10	1	n	1.00	2	0	2	0	n	1.00	8	0	8	0	n	1.00	1	0	1	0	n	0.44	4	5	4	5	n	1.00	12	0	12	0	n	0.78	7	2	7	2	n	0.80	8	2	8	2	y	ENSMUSG00000066684.11	Pilrb1	chr5	protein_coding	paired immunoglobin-like type 2 receptor beta 1
known_NIR_14433	chr5	137979882	137983388	+	137979882	137983500	A3SS	ENSMUST00000197571.2	known	0.96	4329	189	4329	189	y	0.96	4375	192	4375	192	y	0.97	3509	124	3509	124	y	0.96	5368	216	5368	216	y	0.96	6238	279	6238	279	y	0.95	2443	123	2443	123	y	0.95	5201	287	5201	287	y	0.95	3550	169	3550	169	y	0.95	4301	214	4301	214	y	0.96	6112	232	6112	232	y	0.95	4366	210	4366	210	y	0.97	6068	214	6068	214	y	ENSMUSG00000037053.7	Azgp1	chr5	protein_coding	alpha-2-glycoprotein 1, zinc
known_NIR_14434	chr5	138092401	138095329	+	138092401	138098852	A3SS	ENSMUST00000066617.12	known	0.89	17	2	17	2	y	1.00	10	0	10	0	n	0.95	19	1	19	1	n	0.81	22	5	22	5	y	0.89	34	4	34	4	y	1.00	28	0	28	0	n	0.93	37	3	37	3	y	1.00	24	0	24	0	n	0.95	18	1	18	1	n	1.00	32	0	32	0	n	0.90	19	2	19	2	y	0.95	18	1	18	1	n	ENSMUSG00000029729.13	Zkscan1	chr5	protein_coding	zinc finger with KRAB and SCAN domains 1
known_NIR_14435	chr5	138095841	138098852	+	138092401	138098852	A5SS	ENSMUST00000066617.12	known	0.90	19	2	19	2	y	1.00	13	0	13	0	n	0.97	37	1	37	1	n	0.86	31	5	31	5	y	0.91	40	4	40	4	y	1.00	19	0	19	0	n	0.93	41	3	41	3	y	1.00	35	0	35	0	n	0.94	17	1	17	1	n	1.00	38	0	38	0	n	0.91	21	2	21	2	y	0.96	27	1	27	1	n	ENSMUSG00000029729.13	Zkscan1	chr5	protein_coding	zinc finger with KRAB and SCAN domains 1
known_NIR_14436	chr5	138115269	138116098	+	138115250	138116098	A5SS	ENSMUST00000062350.15	known	0.70	7	3	7	3	y	1.00	5	0	5	0	n	0.85	11	2	11	2	y	0.62	5	3	5	3	n	0.77	20	6	20	6	y	0.64	7	4	7	4	y	0.74	17	6	17	6	y	0.60	9	6	9	6	y	1.00	3	0	3	0	n	0.62	5	3	5	3	n	0.71	5	2	5	2	n	0.73	16	6	16	6	y	ENSMUSG00000037017.16	Zscan21	chr5	protein_coding	zinc finger and SCAN domain containing 21
known_NIR_14437	chr5	138116182;138117991	138117912;138123240	+	138116182	138123240	cassetteExon	ENSMUST00000062350.15	known	0.00	0.0	13	0;0	13	n	0.00	0.0	16	0;0	16	n	0.08	2.0	24	2;2	24	y	0.04	0.5	13	0;1	13	n	0.00	0.0	26	0;0	26	n	0.00	0.0	17	0;0	17	n	0.11	2.0	17	4;0	17	n	0.00	0.0	13	0;0	13	n	0.00	0.0	10	0;0	10	n	0.00	0.0	25	0;0	25	n	0.00	0.0	11	0;0	11	n	0.02	0.5	21	0;1	21	n	ENSMUSG00000037017.16	Zscan21	chr5	protein_coding	zinc finger and SCAN domain containing 21
known_NIR_14438	chr5	138159452	138159637	+	138159444	138159637	A5SS	ENSMUST00000019638.15	known	0.00	1	235	1	235	n	0.01	3	223	3	223	y	0.02	6	329	6	329	y	0.00	1	274	1	274	n	0.02	8	381	8	381	y	0.02	4	215	4	215	y	0.03	11	355	11	355	y	0.02	3	190	3	190	y	0.01	3	211	3	211	y	0.01	3	276	3	276	y	0.02	4	258	4	258	y	0.02	5	242	5	242	y	ENSMUSG00000019494.15	Cops6	chr5	protein_coding	COP9 signalosome subunit 6
known_NIR_14439	chr5	138168658	138169072	-	138168658	138169450	A5SS	ENSMUST00000153867.8	known	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	n	1.00	1	0	1	0	n	0.70	7	3	7	3	y	1.00	3	0	3	0	n	1.00	2	0	2	0	n	1.00	3	0	3	0	n	1.00	3	0	3	0	n	1.00	4	0	4	0	n	-	-	-	-	-	-	1.00	6	0	6	0	n	ENSMUSG00000029730.17	Mcm7	chr5	protein_coding	minichromosome maintenance complex component 7
known_NIR_14440	chr5	138168658	138169072	-	138168658	138169988	A5SS	ENSMUST00000000505.16	known	0.14	1	6	1	6	n	0.00	0	2	0	2	n	0.16	3	16	3	16	y	0.20	1	4	1	4	n	0.33	7	14	7	14	y	0.27	3	8	3	8	y	0.12	2	15	2	15	y	1.00	3	0	3	0	n	0.33	3	6	3	6	n	0.31	4	9	4	9	y	0.00	0	11	0	11	n	0.29	6	15	6	15	y	ENSMUSG00000029730.17	Mcm7	chr5	protein_coding	minichromosome maintenance complex component 7
known_NIR_14441	chr5	138168658	138169450	-	138168658	138169988	A5SS	ENSMUST00000000505.16	known	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	16	0	16	n	0.00	0	4	0	4	n	0.18	3	14	3	14	y	0.00	0	8	0	8	n	0.00	0	15	0	15	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	ENSMUSG00000029730.17	Mcm7	chr5	protein_coding	minichromosome maintenance complex component 7
known_NIR_14442	chr5	138177222	138177675	-	138177409	138177675	A3SS	ENSMUST00000048698.14	known	0.00	0	34	0	34	n	0.00	0	38	0	38	n	0.00	0	40	0	40	n	0.00	0	40	0	40	n	0.00	0	54	0	54	n	0.00	0	24	0	24	n	0.00	0	55	0	55	n	0.07	1	13	1	13	n	0.00	0	29	0	29	n	0.10	5	46	5	46	y	0.00	0	47	0	47	n	0.00	0	34	0	34	n	ENSMUSG00000036980.14	Taf6	chr5	protein_coding	TATA-box binding protein associated factor 6
known_NIR_14443	chr5	138182809	138185224	-	138182809	138185432	A5SS	ENSMUST00000048698.14	known	0.38	5	8	5	8	y	0.25	3	9	3	9	y	0.15	2	11	2	11	y	0.12	2	14	2	14	y	0.14	3	19	3	19	y	0.00	0	4	0	4	n	0.38	5	8	5	8	y	0.00	0	4	0	4	n	0.00	0	15	0	15	n	0.36	9	16	9	16	y	0.38	6	10	6	10	y	0.23	5	17	5	17	y	ENSMUSG00000036980.14	Taf6	chr5	protein_coding	TATA-box binding protein associated factor 6
known_NIR_14444	chr5	138182809	138185346	-	138182809	138185224	A5SS	ENSMUST00000123415.8	known	0.55	6	5	6	5	y	0.50	3	3	3	3	n	0.75	6	2	6	2	n	0.60	3	2	3	2	n	0.40	2	3	2	3	n	1.00	4	0	4	0	n	0.38	3	5	3	5	n	1.00	1	0	1	0	n	1.00	5	0	5	0	n	0.40	6	9	6	9	y	0.57	8	6	8	6	y	0.00	0	5	0	5	n	ENSMUSG00000036980.14	Taf6	chr5	protein_coding	TATA-box binding protein associated factor 6
known_NIR_14445	chr5	138182809	138185346	-	138182809	138185432	A5SS	ENSMUST00000048698.14	known	0.43	6	8	6	8	y	0.25	3	9	3	9	y	0.35	6	11	6	11	y	0.18	3	14	3	14	y	0.10	2	19	2	19	y	0.50	4	4	4	4	n	0.27	3	8	3	8	y	0.20	1	4	1	4	n	0.25	5	15	5	15	y	0.27	6	16	6	16	y	0.44	8	10	8	10	y	0.00	0	17	0	17	n	ENSMUSG00000036980.14	Taf6	chr5	protein_coding	TATA-box binding protein associated factor 6
known_NIR_14446	chr5	138182809	138185653	-	138182809	138185432	5pMXE	ENSMUST00000048698.14	known	0.11	1	8	1	8	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.10	2	19	2	19	y	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.06	1	15	1	15	n	0.00	0	16	0	16	n	0.00	0	10	0	10	n	0.00	0	17	0	17	n	ENSMUSG00000036980.14	Taf6	chr5	protein_coding	TATA-box binding protein associated factor 6
known_NIR_14447	chr5	138259251	138260064	-	138259251;138259978	138259815;138260064	ES	ENSMUST00000048421.14	known	0.15	4	23.0	4	26;20	y	0.21	7	26.0	7	30;22	y	0.03	1	36.0	1	41;31	n	0.14	4	24.5	4	27;22	y	0.06	2	31.5	2	44;19	y	0.16	3	16.0	3	18;14	y	0.19	7	29.0	7	40;18	y	0.05	1	19.0	1	28;10	n	0.19	4	17.0	4	22;12	y	0.17	6	29.5	6	37;22	y	0.17	5	25.0	5	35;15	y	0.23	8	27.0	8	30;24	y	ENSMUSG00000036948.18	Map11	chr5	protein_coding	microtubule associated protein 11
known_NIR_14448	chr5	138259251	138260064	-	138259978	138260064	A3SS	ENSMUST00000159534.4	known	0.17	4	20	4	20	y	0.24	7	22	7	22	y	0.03	1	31	1	31	n	0.15	4	22	4	22	y	0.10	2	19	2	19	y	0.18	3	14	3	14	y	0.28	7	18	7	18	y	0.09	1	10	1	10	n	0.25	4	12	4	12	y	0.21	6	22	6	22	y	0.25	5	15	5	15	y	0.25	8	24	8	24	y	ENSMUSG00000036948.18	Map11	chr5	protein_coding	microtubule associated protein 11
known_NIR_14449	chr5	138261006	138261329	-	138261006;138261238	138261109;138261329	ES	ENSMUST00000048421.14	known	0.03	2	64.5	2	78;51	y	0.00	0	42.0	0	34;50	n	0.02	1	49.0	1	52;46	n	0.00	0	26.0	0	24;28	n	0.04	2	48.0	2	48;48	y	0.04	1	26.0	1	27;25	n	0.00	0	50.5	0	55;46	n	0.00	0	18.0	0	20;16	n	0.00	0	30.5	0	36;25	n	0.02	1	44.0	1	42;46	n	0.00	0	38.0	0	35;41	n	0.00	0	37.0	0	31;43	n	ENSMUSG00000036948.18	Map11	chr5	protein_coding	microtubule associated protein 11
known_NIR_14450	chr5	138453351	138454141	+	138453351	138454137	A3SS	ENSMUST00000085856.12	known	0.20	1	4	1	4	n	0.33	1	2	1	2	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.23	3	10	3	10	y	0.20	1	4	1	4	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.22	2	7	2	7	n	0.14	1	6	1	6	n	0.00	0	8	0	8	n	ENSMUSG00000036898.17	Zfp157	chr5	protein_coding	zinc finger protein 157
known_NIR_14451	chr5	138453355	138454137	+	138453351	138454137	A5SS	ENSMUST00000085856.12	known	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.18	2	9	2	9	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	ENSMUSG00000036898.17	Zfp157	chr5	protein_coding	zinc finger protein 157
known_NIR_14452	chr5	138610427	138615317	-	138610427;138614827	138614732;138615317	ES	ENSMUST00000110905.9	known	0.42	7	9.5	7	9;10	y	0.29	2	5.0	2	4;6	y	0.45	14	17.0	14	17;17	y	0.26	3	8.5	3	11;6	y	0.28	7	18.0	7	22;14	y	0.57	8	6.0	8	7;5	y	0.35	7	13.0	7	17;9	y	0.08	1	11.0	1	6;16	n	0.33	9	18.5	9	15;22	y	0.20	5	19.5	5	18;21	y	0.27	3	8.0	3	9;7	y	0.32	9	19.0	9	21;17	y	ENSMUSG00000058291.15	Zfp68	chr5	protein_coding	zinc finger protein 68
known_NIR_14453	chr5	138610427;138614821	138614732;138615317	-	138610427	138615317	cassetteExon	ENSMUST00000085852.11	known	0.44	5.5	7	9;2	7	y	0.60	3.0	2	4;2	2	n	0.40	9.5	14	17;2	14	y	0.70	7.0	3	11;3	3	y	0.63	12.0	7	22;2	7	y	0.33	4.0	8	7;1	8	n	0.61	11.0	7	17;5	7	y	0.75	3.0	1	6;0	1	n	0.47	8.0	9	15;1	9	n	0.69	11.0	5	18;4	5	y	0.68	6.5	3	9;4	3	y	0.59	13.0	9	21;5	9	y	ENSMUSG00000058291.15	Zfp68	chr5	protein_coding	zinc finger protein 68
known_NIR_14454	chr5	138614821	138615317	-	138614827	138615317	A3SS	ENSMUST00000110905.9	known	0.17	2	10	2	10	y	0.25	2	6	2	6	n	0.11	2	17	2	17	y	0.33	3	6	3	6	n	0.12	2	14	2	14	y	0.17	1	5	1	5	n	0.36	5	9	5	9	y	0.00	0	16	0	16	n	0.04	1	22	1	22	n	0.16	4	21	4	21	y	0.36	4	7	4	7	y	0.23	5	17	5	17	y	ENSMUSG00000058291.15	Zfp68	chr5	protein_coding	zinc finger protein 68
known_NIR_14455	chr5	138741980;138742534	138742457;138743556	+	138741980	138743556	cassetteExon	ENSMUST00000026972.8	known	0.07	4.5	63	5;4	63	y	0.01	1.0	69	1;1	69	n	0.03	3.0	92	4;2	92	y	0.01	1.5	112	1;2	112	n	0.04	5.0	112	5;5	112	y	0.01	0.5	52	1;0	52	n	0.02	2.0	83	3;1	83	n	0.01	0.5	71	0;1	71	n	0.04	4.0	93	3;5	93	y	0.03	4.0	123	2;6	123	y	0.03	3.0	111	3;3	111	y	0.03	3.5	122	2;5	122	y	ENSMUSG00000025854.16	Fam20c	chr5	protein_coding	FAM20C, golgi associated secretory pathway kinase
known_NIR_14456	chr5	138962982;138964445	138964377;138964901	-	138962982	138964901	cassetteExon	ENSMUST00000076095.14	known	0.50	4.0	4	3;5	4	y	0.78	10.5	3	10;11	3	y	0.25	3.0	9	3;3	9	y	0.37	3.5	6	3;4	6	y	0.68	8.5	4	9;8	4	y	0.33	2.0	4	1;3	4	n	0.19	4.5	19	3;6	19	y	0.39	4.5	7	1;8	7	n	0.53	8.0	7	6;10	7	y	0.51	9.5	9	10;9	9	y	0.46	6.0	7	5;7	7	y	0.55	8.5	7	9;8	7	y	ENSMUSG00000025856.16	Pdgfa	chr5	protein_coding	platelet derived growth factor, alpha
known_NIR_14457	chr5	139212640	139216528	+	139212640	139215508	3pMXE	ENSMUST00000135720.3	known	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.11	2	16	2	16	y	0.09	1	10	1	10	n	0.00	0	19	0	19	n	0.00	0	11	0	11	n	0.08	1	11	1	11	n	0.10	1	9	1	9	n	0.00	0	8	0	8	n	0.00	0	17	0	17	n	0.60	3	2	3	2	n	0.00	0	21	0	21	n	ENSMUSG00000036817.15	Sun1	chr5	protein_coding	Sad1 and UNC84 domain containing 1
known_NIR_14458	chr5	139212640	139216528	+	139212640;139215699	139215508;139216528	ES	ENSMUST00000058716.14	known	0.00	0	6.5	0	8;5	n	0.00	0	12.5	0	12;13	n	0.11	2	15.5	2	16;15	y	0.11	1	8.5	1	10;7	n	0.00	0	16.0	0	19;13	n	0.00	0	8.5	0	11;6	n	0.08	1	11.5	1	11;12	n	0.12	1	7.0	1	9;5	n	0.00	0	7.0	0	8;6	n	0.00	0	17.0	0	17;17	n	0.43	3	4.0	3	2;6	y	0.00	0	18.5	0	21;16	n	ENSMUSG00000036817.15	Sun1	chr5	protein_coding	Sad1 and UNC84 domain containing 1
known_NIR_14459	chr5	139212640	139219226	+	139212640	139215508	3pMXE	ENSMUST00000135720.3	known	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.09	1	10	1	10	n	0.17	4	19	4	19	y	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.20	2	8	2	8	y	0.00	0	17	0	17	n	0.00	0	2	0	2	n	0.00	0	21	0	21	n	ENSMUSG00000036817.15	Sun1	chr5	protein_coding	Sad1 and UNC84 domain containing 1
known_NIR_14460	chr5	139212640	139219226	+	139216992	139219226	5pMXE	ENSMUST00000126108.2	known	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.09	1	10	1	10	n	0.15	4	22	4	22	y	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.22	2	7	2	7	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	ENSMUSG00000036817.15	Sun1	chr5	protein_coding	Sad1 and UNC84 domain containing 1
known_NIR_14461	chr5	139216593	139219226	+	139216593;139216992	139216882;139219226	ES	ENSMUST00000058716.14	known	0.19	2	8.5	2	4;13	y	0.10	1	9.5	1	9;10	n	0.08	1	11.0	1	12;10	n	0.19	2	8.5	2	7;10	y	0.00	0	18.0	0	14;22	n	0.00	0	7.0	0	6;8	n	0.24	3	9.5	3	11;8	y	0.33	3	6.0	3	7;5	y	0.29	2	5.0	2	3;7	y	0.24	3	9.5	3	7;12	y	0.24	2	6.5	2	7;6	y	0.21	2	7.5	2	7;8	y	ENSMUSG00000036817.15	Sun1	chr5	protein_coding	Sad1 and UNC84 domain containing 1
known_NIR_14462	chr5	139216593	139219226	+	139216992	139219226	5pMXE	ENSMUST00000126108.2	known	0.13	2	13	2	13	y	0.09	1	10	1	10	n	0.09	1	10	1	10	n	0.17	2	10	2	10	y	0.00	0	22	0	22	n	0.00	0	8	0	8	n	0.27	3	8	3	8	y	0.38	3	5	3	5	n	0.22	2	7	2	7	n	0.20	3	12	3	12	y	0.25	2	6	2	6	n	0.20	2	8	2	8	y	ENSMUSG00000036817.15	Sun1	chr5	protein_coding	Sad1 and UNC84 domain containing 1
known_NIR_14463	chr5	139223677	139224586	+	139223677	139224583	A3SS	ENSMUST00000058716.14	known	0.25	4	12	4	12	y	0.41	12	17	12	17	y	0.35	14	26	14	26	y	0.50	11	11	11	11	y	0.35	8	15	8	15	y	0.21	4	15	4	15	y	0.38	10	16	10	16	y	0.35	7	13	7	13	y	0.29	5	12	5	12	y	0.50	13	13	13	13	y	0.11	2	16	2	16	y	0.48	16	17	16	17	y	ENSMUSG00000036817.15	Sun1	chr5	protein_coding	Sad1 and UNC84 domain containing 1
known_NIR_14464	chr5	139239356	139248236	+	139238374	139248236	A5SS	ENSMUST00000026976.12	known	0.15	14	78	14	78	y	0.07	6	76	6	76	y	0.03	5	168	5	168	y	0.06	6	99	6	99	y	0.06	7	120	7	120	y	0.07	9	121	9	121	y	0.09	10	102	10	102	y	0.09	9	95	9	95	y	0.08	6	68	6	68	y	0.11	11	85	11	85	y	0.04	4	85	4	85	y	0.04	3	80	3	80	y	ENSMUSG00000025858.13	Get4	chr5	protein_coding	golgi to ER traffic protein 4
known_NIR_14465	chr5	139248314	139248628	+	139248314	139248625	A3SS	ENSMUST00000026976.12	known	0.05	6	110	6	110	y	0.09	9	96	9	96	y	0.06	13	202	13	202	y	0.09	12	127	12	127	y	0.07	13	172	13	172	y	0.06	7	104	7	104	y	0.09	17	182	17	182	y	0.03	4	126	4	126	y	0.06	6	92	6	92	y	0.08	12	139	12	139	y	0.10	9	81	9	81	y	0.04	6	137	6	137	y	ENSMUSG00000025858.13	Get4	chr5	protein_coding	golgi to ER traffic protein 4
known_NIR_14466	chr5	139324130	139324495	-	139324130	139325220	A5SS	ENSMUST00000133951.2	known	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.17	2	10	2	10	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	ENSMUSG00000045438.13	Cox19	chr5	protein_coding	cytochrome c oxidase assembly protein 19
known_NIR_14467	chr5	139324130	139324495	-	139324130	139328318	A5SS	ENSMUST00000049630.13	known	0.00	0	173	0	173	n	0.00	0	163	0	163	n	0.00	0	173	0	173	n	0.00	0	177	0	177	n	0.01	2	166	2	166	y	0.00	0	67	0	67	n	0.00	0	235	0	235	n	0.00	0	109	0	109	n	0.00	0	115	0	115	n	0.00	1	207	1	207	n	0.00	0	145	0	145	n	0.00	0	175	0	175	n	ENSMUSG00000045438.13	Cox19	chr5	protein_coding	cytochrome c oxidase assembly protein 19
known_NIR_14468	chr5	139324130	139325220	-	139324130	139330827	A5SS	ENSMUST00000197520.2	known	1.00	4	0	4	0	n	1.00	2	0	2	0	n	1.00	4	0	4	0	n	1.00	1	0	1	0	n	0.91	10	1	10	1	n	1.00	5	0	5	0	n	0.75	6	2	6	2	n	0.80	8	2	8	2	y	1.00	4	0	4	0	n	1.00	6	0	6	0	n	1.00	10	0	10	0	n	1.00	6	0	6	0	n	ENSMUSG00000045438.13	Cox19	chr5	protein_coding	cytochrome c oxidase assembly protein 19
known_NIR_14469	chr5	139324130	139330827	-	139324130	139328318	A5SS&ES	ENSMUST00000198966.5	known	0.00	0	173	0	173	n	0.00	0	163	0	163	n	0.00	0	173	0	173	n	0.00	0	177	0	177	n	0.01	1	166	1	166	n	0.00	0	67	0	67	n	0.01	2	235	2	235	y	0.02	2	109	2	109	y	0.00	0	115	0	115	n	0.00	0	207	0	207	n	0.00	0	145	0	145	n	0.00	0	175	0	175	n	ENSMUSG00000045438.13	Cox19	chr5	protein_coding	cytochrome c oxidase assembly protein 19
known_NIR_14470	chr5	139324130	139330827	-	139324130;139328429	139328318;139330827	ES	ENSMUST00000049630.13	known	0.00	0	149.5	0	173;126	n	0.00	0	155.5	0	163;148	n	0.00	0	175.0	0	173;177	n	0.00	0	168.5	0	177;160	n	0.01	1	154.0	1	166;142	n	0.00	0	60.5	0	67;54	n	0.01	2	219.5	2	235;204	y	0.02	2	100.5	2	109;92	y	0.00	0	126.5	0	115;138	n	0.00	0	196.0	0	207;185	n	0.00	0	138.5	0	145;132	n	0.00	0	170.0	0	175;165	n	ENSMUSG00000045438.13	Cox19	chr5	protein_coding	cytochrome c oxidase assembly protein 19
known_NIR_14471	chr5	139324130	139330827	-	139328429	139330827	3pMXE	ENSMUST00000152715.2	known	0.00	0	126	0	126	n	0.00	0	148	0	148	n	0.00	0	177	0	177	n	0.00	0	160	0	160	n	0.01	1	142	1	142	n	0.00	0	54	0	54	n	0.01	2	204	2	204	y	0.02	2	92	2	92	y	0.00	0	138	0	138	n	0.00	0	185	0	185	n	0.00	0	132	0	132	n	0.00	0	165	0	165	n	ENSMUSG00000045438.13	Cox19	chr5	protein_coding	cytochrome c oxidase assembly protein 19
known_NIR_14472	chr5	139324130;139325331	139325220;139328318	-	139324130	139328318	cassetteExon	ENSMUST00000049630.13	known	0.02	3.5	173	4;3	173	y	0.01	1.0	163	2;0	163	n	0.01	2.0	173	4;0	173	n	0.01	1.0	177	1;1	177	n	0.03	6.0	166	10;2	166	y	0.04	2.5	67	5;0	67	n	0.02	4.5	235	6;3	235	y	0.04	4.0	109	8;0	109	n	0.02	2.5	115	4;1	115	n	0.01	3.0	207	6;0	207	n	0.03	5.0	145	10;0	145	n	0.02	3.0	175	6;0	175	n	ENSMUSG00000045438.13	Cox19	chr5	protein_coding	cytochrome c oxidase assembly protein 19
known_NIR_14473	chr5	139325140	139325220	-	139324130	139325220	A3SS	ENSMUST00000133951.2	known	0.43	3	4	3	4	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.67	2	1	2	1	n	0.44	8	10	8	10	y	0.29	2	5	2	5	n	0.54	7	6	7	6	y	0.38	5	8	5	8	y	0.00	0	4	0	4	n	0.40	4	6	4	6	y	0.23	3	10	3	10	y	0.40	4	6	4	6	y	ENSMUSG00000045438.13	Cox19	chr5	protein_coding	cytochrome c oxidase assembly protein 19
known_NIR_14474	chr5	139328429;139328987	139328876;139330827	-	139328429	139330827	cassetteExon	ENSMUST00000049630.13	known	0.03	4.5	126	5;4	126	y	0.01	2.0	148	3;1	148	n	0.02	3.5	177	5;2	177	y	0.00	0.5	160	0;1	160	n	0.05	7.5	142	7;8	142	y	0.03	1.5	54	1;2	54	n	0.03	5.5	204	5;6	204	y	0.04	3.5	92	3;4	92	y	0.02	2.5	138	3;2	138	y	0.01	1.0	185	1;1	185	n	0.03	4.0	132	4;4	132	y	0.02	3.0	165	3;3	165	y	ENSMUSG00000045438.13	Cox19	chr5	protein_coding	cytochrome c oxidase assembly protein 19
known_NIR_14475	chr5	139375810	139378177	+	139366498	139378177	A5SS	ENSMUST00000051293.8	known	0.00	0	32	0	32	n	0.00	0	26	0	26	n	0.04	2	54	2	54	y	0.02	1	49	1	49	n	0.03	3	111	3	111	y	0.04	1	27	1	27	n	0.00	0	64	0	64	n	0.00	0	24	0	24	n	0.00	0	55	0	55	n	0.00	0	64	0	64	n	0.00	0	47	0	47	n	0.00	0	113	0	113	n	ENSMUSG00000044197.9	Gpr146	chr5	protein_coding	G protein-coupled receptor 146
known_NIR_14476	chr5	139464353	139467721	-	139464353	139464540	5pMXE	ENSMUST00000132454.2	known	1.00	9	0	9	0	n	1.00	8	0	8	0	n	1.00	19	0	19	0	n	1.00	11	0	11	0	n	0.97	37	1	37	1	n	1.00	15	0	15	0	n	1.00	24	0	24	0	n	1.00	19	0	19	0	n	1.00	7	0	7	0	n	1.00	23	0	23	0	n	1.00	17	0	17	0	n	0.89	17	2	17	2	y	ENSMUSG00000053581.14	Zfand2a	chr5	protein_coding	zinc finger, AN1-type domain 2A
known_NIR_14477	chr5	139468552	139470032	-	139468552	139470021	A5SS	ENSMUST00000079996.13	known	0.73	16	6	16	6	y	0.56	9	7	9	7	y	0.64	16	9	16	9	y	0.65	11	6	11	6	y	0.55	22	18	22	18	y	0.85	11	2	11	2	y	0.60	18	12	18	12	y	0.55	11	9	11	9	y	0.80	4	1	4	1	n	0.50	11	11	11	11	y	0.35	8	15	8	15	y	0.73	16	6	16	6	y	ENSMUSG00000053581.14	Zfand2a	chr5	protein_coding	zinc finger, AN1-type domain 2A
known_NIR_14478	chr5	139757484	139757571	-	139757478	139757571	A3SS	ENSMUST00000072607.9	known	0.50	2	2	2	2	n	0.50	1	1	1	1	n	0.12	1	7	1	7	n	0.56	5	4	5	4	n	0.40	4	6	4	6	y	0.00	0	5	0	5	n	0.43	3	4	3	4	n	0.57	4	3	4	3	n	0.00	0	11	0	11	n	0.40	6	9	6	9	y	0.30	3	7	3	7	y	0.50	5	5	5	5	y	ENSMUSG00000029547.11	Ints1	chr5	protein_coding	integrator complex subunit 1
known_NIR_14479	chr5	139798947	139799683	-	139798947	139799808	A5SS	ENSMUST00000044002.10	known	0.31	5	11	5	11	y	0.38	5	8	5	8	y	0.00	0	12	0	12	n	0.31	8	18	8	18	y	0.27	8	22	8	22	y	0.40	4	6	4	6	y	0.31	5	11	5	11	y	0.00	0	8	0	8	n	0.14	2	12	2	12	y	0.38	15	25	15	25	y	0.07	1	13	1	13	n	0.35	9	17	9	17	y	ENSMUSG00000036687.14	Tmem184a	chr5	protein_coding	transmembrane protein 184a
known_NIR_14480	chr5	139812119	139812564	-	139812119	139812477	A5SS	ENSMUST00000031531.14	known	0.13	13	84	13	84	y	0.06	4	58	4	58	y	0.05	2	36	2	36	y	0.14	12	74	12	74	y	0.15	13	76	13	76	y	0.06	2	31	2	31	y	0.22	17	62	17	62	y	0.15	5	29	5	29	y	0.19	12	50	12	50	y	0.06	6	88	6	88	y	0.09	6	62	6	62	y	0.21	16	62	16	62	y	ENSMUSG00000029551.14	Psmg3	chr5	protein_coding	proteasome (prosome, macropain) assembly chaperone 3
known_NIR_14481	chr5	140074592;140091360	140091270;140102992	-	140074592	140102992	cassetteExon	ENSMUST00000110829.7	known	1.00	30.0	0	25;35	0	n	1.00	38.5	0	46;31	0	n	0.93	57.0	4	59;55	4	y	1.00	34.0	0	34;34	0	n	1.00	51.0	0	55;47	0	n	1.00	37.0	0	44;30	0	n	0.98	40.0	1	45;35	1	n	0.87	26.0	4	24;28	4	y	0.97	30.5	1	34;27	1	n	1.00	38.0	0	41;35	0	n	0.93	28.5	2	29;28	2	y	1.00	32.5	0	39;26	0	n	ENSMUSG00000029554.16	Mad1l1	chr5	protein_coding	MAD1 mitotic arrest deficient 1-like 1
known_NIR_14482	chr5	140091360	140101081	-	140091360	140102992	A5SS	ENSMUST00000031534.9	known	0.00	0	35	0	35	n	0.03	1	31	1	31	n	0.00	0	55	0	55	n	0.00	0	34	0	34	n	0.00	0	47	0	47	n	0.00	0	30	0	30	n	0.00	0	35	0	35	n	0.00	0	28	0	28	n	0.00	0	27	0	27	n	0.05	2	35	2	35	y	0.00	0	28	0	28	n	0.00	0	26	0	26	n	ENSMUSG00000029554.16	Mad1l1	chr5	protein_coding	MAD1 mitotic arrest deficient 1-like 1
known_NIR_14483	chr5	140317710	140320210	+	140318228	140320210	A5SS&ES	ENSMUST00000110827.8	known	0.18	10	46	10	46	y	0.10	7	60	7	60	y	0.17	5	24	5	24	y	0.10	9	78	9	78	y	0.11	8	67	8	67	y	0.12	4	29	4	29	y	0.14	13	80	13	80	y	0.26	9	25	9	25	y	0.00	0	68	0	68	n	0.07	8	100	8	100	y	0.11	8	68	8	68	y	0.11	6	51	6	51	y	ENSMUSG00000036639.13	Nudt1	chr5	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 1
known_NIR_14484	chr5	140317710;140318228	140318178;140320210	+	140317710	140320210	cassetteExon	ENSMUST00000071881.10	known	0.76	32.5	10	19;46	10	y	0.86	43.5	7	27;60	7	y	0.76	16.0	5	8;24	5	y	0.85	52.0	9	26;78	9	y	0.85	44.5	8	22;67	8	y	0.84	21.5	4	14;29	4	y	0.81	57.0	13	34;80	13	y	0.67	18.5	9	12;25	9	y	1.00	44.5	0	21;68	0	n	0.89	66.0	8	32;100	8	y	0.86	47.5	8	27;68	8	y	0.85	34.0	6	17;51	6	y	ENSMUSG00000036639.13	Nudt1	chr5	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 1
known_NIR_14485	chr5	140428191	140428397	+	140428191	140428629	A3SS	ENSMUST00000100507.8	known	0.00	1	284	1	284	n	0.00	0	325	0	325	n	0.00	0	329	0	329	n	0.00	0	250	0	250	n	0.00	1	376	1	376	n	0.01	1	192	1	192	n	0.01	3	317	3	317	y	0.00	0	160	0	160	n	0.00	0	203	0	203	n	0.00	0	265	0	265	n	0.01	3	310	3	310	y	0.00	0	252	0	252	n	ENSMUSG00000056076.14	Eif3b	chr5	protein_coding	eukaryotic translation initiation factor 3, subunit B
known_NIR_14486	chr5	140609286;140612281	140612206;140612877	-	140609286	140612877	cassetteExon	ENSMUST00000197452.5	known	1.00	12.0	0	14;10	0	n	1.00	6.0	0	7;5	0	n	1.00	6.5	0	9;4	0	n	1.00	2.5	0	1;4	0	n	0.75	9.0	3	5;13	3	y	1.00	6.5	0	4;9	0	n	1.00	5.0	0	6;4	0	n	1.00	7.0	0	7;7	0	n	1.00	4.5	0	6;3	0	n	1.00	10.5	0	9;12	0	n	1.00	6.5	0	8;5	0	n	1.00	7.5	0	9;6	0	n	ENSMUSG00000036565.8	Ttyh3	chr5	protein_coding	tweety family member 3
known_NIR_14487	chr5	140651963	140656222	-	140651963	140654777	5pMXE	ENSMUST00000148788.2	known	0.50	2	2	2	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	5	5	5	5	y	0.29	2	5	2	5	n	1.00	1	0	1	0	n	0.57	4	3	4	3	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.67	4	2	4	2	n	0.00	0	1	0	1	n	ENSMUSG00000036555.15	Iqce	chr5	protein_coding	IQ motif containing E
known_NIR_14488	chr5	140651963;140654860	140654777;140656222	-	140651963	140656222	cassetteExon	ENSMUST00000041783.14	known	0.33	1.0	2	2;0	2	n	1.00	0.5	0	1;0	0	n	-	-	-	-	-	-	0.44	4.0	5	5;3	5	y	0.60	3.0	2	5;1	2	n	0.00	0.0	1	0;0	1	n	0.33	2.0	4	3;1	4	n	0.67	2.0	1	2;2	1	n	-	-	-	-	-	-	0.50	1.0	1	2;0	1	n	0.27	1.5	4	2;1	4	n	1.00	0.5	0	1;0	0	n	ENSMUSG00000036555.15	Iqce	chr5	protein_coding	IQ motif containing E
known_NIR_14489	chr5	140651963;140654875	140654777;140656222	-	140651963	140656222	cassetteExon	ENSMUST00000041783.14	known	0.43	1.5	2	2;1	2	n	1.00	2.0	0	1;3	0	n	1.00	1.5	0	0;3	0	n	0.50	5.0	5	5;5	5	y	0.64	3.5	2	5;2	2	n	0.00	0.0	1	0;0	1	n	0.33	2.0	4	3;1	4	n	0.50	1.0	1	2;0	1	n	-	-	-	-	-	-	0.50	1.0	1	2;0	1	n	0.27	1.5	4	2;1	4	n	1.00	0.5	0	1;0	0	n	ENSMUSG00000036555.15	Iqce	chr5	protein_coding	IQ motif containing E
known_NIR_14490	chr5	140660115	140663171	-	140660115;140661003	140660833;140663171	ES	ENSMUST00000041783.14	known	0.67	5	2.5	5	3;2	y	0.44	2	2.5	2	1;4	n	0.17	1	5.0	1	5;5	n	0.53	4	3.5	4	4;3	y	0.38	4	6.5	4	5;8	y	0.00	0	3.5	0	7;0	n	0.29	2	5.0	2	6;4	y	0.48	5	5.5	5	5;6	y	0.50	4	4.0	4	3;5	y	0.42	4	5.5	4	5;6	y	0.62	4	2.5	4	3;2	n	0.40	3	4.5	3	6;3	y	ENSMUSG00000036555.15	Iqce	chr5	protein_coding	IQ motif containing E
known_NIR_14491	chr5	140666696	140669131	-	140668212	140669131	A3SS&ES	ENSMUST00000041783.14	known	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.00	0	1	0	1	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.18	2	9	2	9	y	ENSMUSG00000036555.15	Iqce	chr5	protein_coding	IQ motif containing E
known_NIR_14492	chr5	140677425	140679170	-	140677425	140678549	A5SS&ES	ENSMUST00000142081.6	known	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.11	1	8	1	8	n	0.18	2	9	2	9	y	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.75	3	1	3	1	n	0.07	1	13	1	13	n	0.00	0	4	0	4	n	0.56	5	4	5	4	n	ENSMUSG00000036555.15	Iqce	chr5	protein_coding	IQ motif containing E
known_NIR_14493	chr5	140677425	140679170	-	140677425;140678683	140678549;140679170	ES	ENSMUST00000041783.14	known	0.00	0	3.5	0	7;0	n	0.00	0	1.5	0	1;2	n	0.00	0	1.0	0	2;0	n	0.17	1	5.0	1	8;2	n	0.22	2	7.0	2	9;5	y	0.00	0	0.5	0	1;0	n	0.33	1	2.0	1	3;1	n	0.00	0	4.5	0	6;3	n	0.60	3	2.0	3	1;3	n	0.10	1	9.0	1	13;5	n	0.00	0	2.0	0	4;0	n	0.53	5	4.5	5	4;5	y	ENSMUSG00000036555.15	Iqce	chr5	protein_coding	IQ motif containing E
known_NIR_14494	chr5	140690983	140691708	+	140690830	140691708	A5SS	ENSMUST00000041588.13	known	0.46	6	7	6	7	y	0.14	1	6	1	6	n	0.40	2	3	2	3	n	0.64	7	4	7	4	y	0.75	9	3	9	3	y	0.14	1	6	1	6	n	0.71	5	2	5	2	n	0.42	5	7	5	7	y	0.20	1	4	1	4	n	0.27	4	11	4	11	y	0.33	2	4	2	4	n	0.25	2	6	2	6	n	ENSMUSG00000000148.18	Brat1	chr5	protein_coding	BRCA1-associated ATM activator 1
known_NIR_14495	chr5	140698656	140698808	+	140698632	140698808	A5SS	ENSMUST00000041588.13	known	0.00	0	9	0	9	n	0.40	2	3	2	3	n	0.55	6	5	6	5	y	0.00	0	11	0	11	n	0.30	3	7	3	7	y	0.09	1	10	1	10	n	0.27	4	11	4	11	y	0.22	2	7	2	7	n	0.20	2	8	2	8	y	0.20	2	8	2	8	y	0.60	3	2	3	2	n	0.00	0	4	0	4	n	ENSMUSG00000000148.18	Brat1	chr5	protein_coding	BRCA1-associated ATM activator 1
known_NIR_14496	chr5	140698927	140700322	+	140698927;140700139	140700048;140700322	ES	ENSMUST00000041588.13	known	0.07	1	13.5	1	11;16	n	0.24	3	9.5	3	8;11	y	0.05	1	18.0	1	19;17	n	0.20	4	16.5	4	14;19	y	0.05	1	19.0	1	19;19	n	0.00	0	6.5	0	6;7	n	0.22	4	14.0	4	10;18	y	0.14	2	12.5	2	12;13	y	0.00	0	10.0	0	12;8	n	0.05	1	17.5	1	17;18	n	0.09	1	10.0	1	10;10	n	0.09	2	20.5	2	16;25	y	ENSMUSG00000000148.18	Brat1	chr5	protein_coding	BRCA1-associated ATM activator 1
known_NIR_14497	chr5	140746873	140771152	-	140746873;140748395	140748345;140771152	ES	ENSMUST00000000153.9	known	0.00	0	180.5	0	190;171	n	0.00	0	132.5	0	151;114	n	0.00	0	212.0	0	223;201	n	0.00	0	309.0	0	319;299	n	0.00	0	347.0	0	355;339	n	0.00	0	163.5	0	177;150	n	0.00	0	285.5	0	304;267	n	0.00	0	162.5	0	169;156	n	0.00	0	148.0	0	152;144	n	0.01	2	322.0	2	325;319	y	0.00	0	155.5	0	158;153	n	0.00	0	189.0	0	184;194	n	ENSMUSG00000000149.11	Gna12	chr5	protein_coding	guanine nucleotide binding protein, alpha 12
known_NIR_14498	chr5	142387796	142420896	+	142387796	142405234	3pMXE	ENSMUST00000198422.2	known	1.00	2	0	2	0	n	1.00	6	0	6	0	n	1.00	10	0	10	0	n	0.88	21	3	21	3	y	1.00	16	0	16	0	n	1.00	3	0	3	0	n	1.00	7	0	7	0	n	1.00	11	0	11	0	n	1.00	5	0	5	0	n	0.86	12	2	12	2	y	1.00	6	0	6	0	n	1.00	9	0	9	0	n	ENSMUSG00000056493.10	Foxk1	chr5	protein_coding	forkhead box K1
known_NIR_14499	chr5	142452147	142452231	+	142452147	142452245	A3SS	ENSMUST00000198967.2	known	0.10	2	18	2	18	y	0.00	0	25	0	25	n	0.00	0	13	0	13	n	0.13	3	20	3	20	y	0.12	4	28	4	28	y	0.00	0	14	0	14	n	0.04	1	22	1	22	n	0.27	3	8	3	8	y	0.05	1	18	1	18	n	0.03	1	34	1	34	n	0.17	4	20	4	20	y	0.11	2	17	2	17	y	ENSMUSG00000039623.14	Ap5z1	chr5	protein_coding	adaptor-related protein complex 5, zeta 1 subunit
known_NIR_14500	chr5	142459805	142460177	+	142459805	142460129	A3SS	ENSMUST00000038699.13	known	0.17	2	10	2	10	y	0.00	0	18	0	18	n	0.00	0	18	0	18	n	0.00	0	21	0	21	n	0.04	1	23	1	23	n	0.00	0	12	0	12	n	0.13	2	13	2	13	y	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	19	0	19	n	0.00	0	18	0	18	n	0.00	0	8	0	8	n	ENSMUSG00000039623.14	Ap5z1	chr5	protein_coding	adaptor-related protein complex 5, zeta 1 subunit
known_NIR_14501	chr5	142651946	142652615	+	142652006	142652615	A5SS	ENSMUST00000036872.16	known	0.01	1	107	1	107	n	0.00	0	127	0	127	n	0.00	0	152	0	152	n	0.00	0	148	0	148	n	0.01	1	189	1	189	n	0.01	1	105	1	105	n	0.01	2	165	2	165	y	0.02	2	93	2	93	y	0.00	0	135	0	135	n	0.01	2	185	2	185	y	0.00	0	155	0	155	n	0.01	2	151	2	151	y	ENSMUSG00000029578.16	Wipi2	chr5	protein_coding	WD repeat domain, phosphoinositide interacting 2
known_NIR_14502	chr5	142718304	142719305	-	142718304;142718786	142718619;142719305	ES	ENSMUST00000152247.8	known	0.00	0	31.0	0	34;28	n	0.00	0	24.0	0	23;25	n	0.05	2	34.5	2	36;33	y	0.03	1	28.0	1	24;32	n	0.00	0	39.0	0	36;42	n	0.06	1	16.5	1	16;17	n	0.03	1	28.0	1	27;29	n	0.00	0	15.0	0	9;21	n	0.04	1	24.5	1	23;26	n	0.00	0	24.0	0	28;20	n	0.12	3	21.5	3	17;26	y	0.03	1	29.5	1	34;25	n	ENSMUSG00000039477.17	Tnrc18	chr5	protein_coding	trinucleotide repeat containing 18
known_NIR_14503	chr5	142718304	142719305	-	142718786	142719305	3pMXE	ENSMUST00000196888.2	known	0.00	0	28	0	28	n	0.00	0	25	0	25	n	0.06	2	33	2	33	y	0.03	1	32	1	32	n	0.00	0	42	0	42	n	0.06	1	17	1	17	n	0.03	1	29	1	29	n	0.00	0	21	0	21	n	0.04	1	26	1	26	n	0.00	0	20	0	20	n	0.10	3	26	3	26	y	0.04	1	25	1	25	n	ENSMUSG00000039477.17	Tnrc18	chr5	protein_coding	trinucleotide repeat containing 18
known_NIR_14504	chr5	142748916	142750806	-	142750652	142750806	3pMXE	ENSMUST00000200371.2	known	0.29	6	15	6	15	y	0.13	2	13	2	13	y	0.13	6	40	6	40	y	0.22	6	21	6	21	y	0.33	14	29	14	29	y	0.00	0	16	0	16	n	0.18	4	18	4	18	y	0.09	1	10	1	10	n	0.27	3	8	3	8	y	0.38	11	18	11	18	y	0.50	7	7	7	7	y	0.10	2	19	2	19	y	ENSMUSG00000039477.17	Tnrc18	chr5	protein_coding	trinucleotide repeat containing 18
known_NIR_14505	chr5	142748916;142750652	142750524;142750806	-	142748916	142750806	cassetteExon	ENSMUST00000152247.8	known	0.74	17.0	6	19;15	6	y	0.85	11.0	2	9;13	2	y	0.86	36.5	6	33;40	6	y	0.76	19.5	6	18;21	6	y	0.63	24.0	14	19;29	14	y	1.00	15.0	0	14;16	0	n	0.84	20.5	4	23;18	4	y	0.92	12.0	1	14;10	1	n	0.79	11.0	3	14;8	3	y	0.61	17.5	11	17;18	11	y	0.64	12.5	7	18;7	7	y	0.90	19.0	2	19;19	2	y	ENSMUSG00000039477.17	Tnrc18	chr5	protein_coding	trinucleotide repeat containing 18
known_NIR_14506	chr5	142759800	142760964	-	142759803	142760964	A3SS	ENSMUST00000152247.8	known	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.31	4	9	4	9	y	0.13	4	27	4	27	y	0.00	0	25	0	25	n	0.00	0	5	0	5	n	0.09	1	10	1	10	n	0.00	0	20	0	20	n	0.27	4	11	4	11	y	0.40	6	9	6	9	y	0.14	2	12	2	12	y	0.30	3	7	3	7	y	ENSMUSG00000039477.17	Tnrc18	chr5	protein_coding	trinucleotide repeat containing 18
known_NIR_14507	chr5	142778915	142800770	-	142775944	142800770	A3SS	ENSMUST00000151477.8	known	0.67	2	1	2	1	n	0.22	2	7	2	7	n	0.24	4	13	4	13	y	0.19	3	13	3	13	y	0.14	2	12	2	12	y	0.14	1	6	1	6	n	0.25	2	6	2	6	n	0.10	1	9	1	9	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.25	2	6	2	6	n	0.12	1	7	1	7	n	ENSMUSG00000039477.17	Tnrc18	chr5	protein_coding	trinucleotide repeat containing 18
known_NIR_14508	chr5	142890537;142890905	142890843;142890992	-	142890537	142890992	cassetteExon	ENSMUST00000100497.11	known	0.00	2.0	933	0;4	933	n	0.00	0.0	941	0;0	941	n	0.00	3.5	2184	0;7	2184	n	0.00	0.0	993	0;0	993	n	0.00	0.0	1337	0;0	1337	n	0.00	0.0	1237	0;0	1237	n	0.00	4.5	1137	3;6	1137	y	0.00	0.0	940	0;0	940	n	0.00	1.5	871	0;3	871	n	0.00	0.0	1127	0;0	1127	n	0.00	0.0	1192	0;0	1192	n	0.00	0.0	1107	0;0	1107	n	ENSMUSG00000029580.15	Actb	chr5	protein_coding	actin, beta
known_NIR_14509	chr5	143076513	143084134	-	143076513;143078880	143078750;143084134	ES	ENSMUST00000053498.13	known	0.00	0	11.5	0	12;11	n	0.00	0	6.5	0	8;5	n	0.10	2	19.0	2	21;17	y	0.00	0	12.5	0	12;13	n	0.00	0	11.5	0	9;14	n	0.09	1	10.0	1	10;10	n	0.00	0	14.5	0	15;14	n	0.00	0	11.0	0	12;10	n	0.00	0	10.5	0	13;8	n	0.00	0	16.5	0	15;18	n	0.00	0	11.0	0	9;13	n	0.00	0	21.5	0	14;29	n	ENSMUSG00000045078.13	Rnf216	chr5	protein_coding	ring finger protein 216
known_NIR_14510	chr5	143076513	143084134	-	143078880	143084134	A3SS&ES	ENSMUST00000200607.5	known	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.11	2	17	2	17	y	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.09	1	10	1	10	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.00	0	29	0	29	n	ENSMUSG00000045078.13	Rnf216	chr5	protein_coding	ring finger protein 216
known_NIR_14511	chr5	143076684	143078750	-	143076513	143078750	A3SS	ENSMUST00000053498.13	known	0.20	3	12	3	12	y	0.27	3	8	3	8	y	0.32	10	21	10	21	y	0.14	2	12	2	12	y	0.40	6	9	6	9	y	0.38	6	10	6	10	y	0.12	2	15	2	15	y	0.29	5	12	5	12	y	0.28	5	13	5	13	y	0.29	6	15	6	15	y	0.31	4	9	4	9	y	0.42	10	14	10	14	y	ENSMUSG00000045078.13	Rnf216	chr5	protein_coding	ring finger protein 216
known_NIR_14512	chr5	143084255	143098654	-	143084260	143098654	A3SS	ENSMUST00000053498.13	known	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.20	2	8	2	8	y	0.00	0	10	0	10	n	0.09	1	10	1	10	n	0.33	1	2	1	2	n	0.33	3	6	3	6	n	0.33	1	2	1	2	n	0.07	1	14	1	14	n	ENSMUSG00000045078.13	Rnf216	chr5	protein_coding	ring finger protein 216
known_NIR_14513	chr5	143225905	143226075	+	143225835	143226075	A5SS	ENSMUST00000032591.15	known	0.20	2	8	2	8	y	0.33	2	4	2	4	n	0.00	0	6	0	6	n	0.06	1	15	1	15	n	0.00	0	8	0	8	n	0.50	3	3	3	3	n	0.33	3	6	3	6	n	0.33	3	6	3	6	n	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	ENSMUSG00000029587.17	Zfp12	chr5	protein_coding	zinc finger protein 12
known_NIR_14514	chr5	143306230	143307510	-	143306230	143307524	A5SS	ENSMUST00000001900.9	known	0.13	9	58	9	58	y	0.11	10	77	10	77	y	0.08	4	46	4	46	y	0.05	3	53	3	53	y	0.12	9	65	9	65	y	0.05	2	40	2	40	y	0.13	11	75	11	75	y	0.08	3	34	3	34	y	0.14	8	48	8	48	y	0.07	7	91	7	91	y	0.13	7	48	7	48	y	0.20	17	66	17	66	y	ENSMUSG00000001844.11	Zdhhc4	chr5	protein_coding	zinc finger, DHHC domain containing 4
known_NIR_14515	chr5	143310153	143310640	-	143310065	143310640	A3SS	ENSMUST00000001900.9	known	0.42	18	25	18	25	y	0.26	12	34	12	34	y	0.21	10	38	10	38	y	0.18	9	42	9	42	y	0.30	21	49	21	49	y	0.10	3	26	3	26	y	0.28	15	39	15	39	y	0.20	8	33	8	33	y	0.42	22	30	22	30	y	0.30	21	49	21	49	y	0.28	17	44	17	44	y	0.24	15	48	15	48	y	ENSMUSG00000001844.11	Zdhhc4	chr5	protein_coding	zinc finger, DHHC domain containing 4
known_NIR_14516	chr5	143312060	143314146	-	143311978	143314146	A3SS	ENSMUST00000001900.9	known	0.14	8	51	8	51	y	0.08	5	59	5	59	y	0.06	3	48	3	48	y	0.03	2	61	2	61	y	0.10	10	87	10	87	y	0.09	4	41	4	41	y	0.10	10	86	10	86	y	0.07	3	40	3	40	y	0.13	9	61	9	61	y	0.08	6	72	6	72	y	0.00	0	86	0	86	n	0.06	4	58	4	58	y	ENSMUSG00000001844.11	Zdhhc4	chr5	protein_coding	zinc finger, DHHC domain containing 4
known_NIR_14517	chr5	143314325	143314433	-	143314325	143314854	A5SS	ENSMUST00000159941.8	known	0.00	0	7	0	7	n	0.60	3	2	3	2	n	0.23	3	10	3	10	y	0.25	2	6	2	6	n	0.67	4	2	4	2	n	0.12	1	7	1	7	n	0.18	3	14	3	14	y	0.50	2	2	2	2	n	0.71	10	4	10	4	y	0.15	2	11	2	11	y	0.40	4	6	4	6	y	0.67	6	3	6	3	n	ENSMUSG00000001844.11	Zdhhc4	chr5	protein_coding	zinc finger, DHHC domain containing 4
known_NIR_14518	chr5	143314325	143314854	-	143314325	143314921	A5SS	ENSMUST00000001900.9	known	0.23	7	23	7	23	y	0.08	2	23	2	23	y	0.37	10	17	10	17	y	0.21	6	23	6	23	y	0.06	2	31	2	31	y	0.39	7	11	7	11	y	0.33	14	28	14	28	y	0.08	2	22	2	22	y	0.31	4	9	4	9	y	0.25	11	33	11	33	y	0.35	6	11	6	11	y	0.10	3	26	3	26	y	ENSMUSG00000001844.11	Zdhhc4	chr5	protein_coding	zinc finger, DHHC domain containing 4
known_NIR_14519	chr5	143314325	143314921	-	143314325	143314433	A5SS	ENSMUST00000162941.8	known	1.00	23	0	23	0	n	0.88	23	3	23	3	y	0.85	17	3	17	3	y	0.92	23	2	23	2	y	0.89	31	4	31	4	y	0.92	11	1	11	1	n	0.90	28	3	28	3	y	0.92	22	2	22	2	y	0.47	9	10	9	10	y	0.94	33	2	33	2	y	0.73	11	4	11	4	y	0.81	26	6	26	6	y	ENSMUSG00000001844.11	Zdhhc4	chr5	protein_coding	zinc finger, DHHC domain containing 4
known_NIR_14520	chr5	143314325;143314652	143314433;143314921	-	143314325	143314921	cassetteExon	ENSMUST00000001900.9	known	0.00	0.0	23	0;0	23	n	0.06	1.5	23	3;0	23	n	0.08	1.5	17	3;0	17	n	0.04	1.0	23	2;0	23	n	0.07	2.5	31	4;1	31	n	0.12	1.5	11	1;2	11	n	0.05	1.5	28	3;0	28	n	0.06	1.5	22	2;1	22	n	0.36	5.0	9	10;0	9	n	0.03	1.0	33	2;0	33	n	0.19	2.5	11	4;1	11	n	0.15	4.5	26	6;3	26	y	ENSMUSG00000001844.11	Zdhhc4	chr5	protein_coding	zinc finger, DHHC domain containing 4
known_NIR_14521	chr5	143315108;143316640	143316459;143318066	+	143315108	143318066	cassetteExon	ENSMUST00000160231.2	known	0.20	0.5	2	0;1	2	n	0.20	1.0	4	2;0	4	n	0.78	7.0	2	2;12	2	y	0.20	0.5	2	1;0	2	n	0.75	3.0	1	3;3	1	n	0.71	2.5	1	1;4	1	n	0.33	3.0	6	0;6	6	n	0.85	5.5	1	3;8	1	n	0.33	1.5	3	0;3	3	n	0.38	5.5	9	5;6	9	y	0.42	5.0	7	7;3	7	y	0.55	6.0	5	2;10	5	y	ENSMUSG00000089889.3	0610040B10Rik	chr5	lncRNA	RIKEN cDNA 0610040B10 gene
known_NIR_14522	chr5	143493913;143495408	143495352;143500424	-	143493913	143500424	cassetteExon	ENSMUST00000080537.14	known	0.07	25.5	342	24;27	342	y	0.07	19.5	264	24;15	264	y	0.05	20.5	433	20;21	433	y	0.04	15.0	350	17;13	350	y	0.05	25.0	472	32;18	472	y	0.05	11.5	223	14;9	223	y	0.04	19.0	453	17;21	453	y	0.05	11.0	231	14;8	231	y	0.04	11.5	283	14;9	283	y	0.04	19.0	520	18;20	520	y	0.05	15.5	326	15;16	326	y	0.02	11.0	476	14;8	476	y	ENSMUSG00000001847.15	Rac1	chr5	protein_coding	Rac family small GTPase 1
known_NIR_14523	chr5	143534889	143548512	+	143534889	143537164	3pMXE	ENSMUST00000118121.2	known	0.36	5	9	5	9	y	0.45	9	11	9	11	y	0.47	14	16	14	16	y	0.62	10	6	10	6	y	0.52	13	12	13	12	y	0.71	10	4	10	4	y	0.54	13	11	13	11	y	0.50	5	5	5	5	y	0.55	11	9	11	9	y	0.50	8	8	8	8	y	0.31	4	9	4	9	y	0.38	6	10	6	10	y	ENSMUSG00000118332.2	Fam220a	chr5	protein_coding	family with sequence similarity 220, member A
known_NIR_14524	chr5	143534889	143548512	+	143534889;143537296	143537164;143548512	ES	ENSMUST00000169329.8	known	0.50	5	5.0	5	9;1	n	0.62	9	5.5	9	11;0	n	0.64	14	8.0	14	16;0	n	0.77	10	3.0	10	6;0	n	0.68	13	6.0	13	12;0	n	0.80	10	2.5	10	4;1	n	0.65	13	7.0	13	11;3	y	0.67	5	2.5	5	5;0	n	0.69	11	5.0	11	9;1	n	0.67	8	4.0	8	8;0	n	0.47	4	4.5	4	9;0	n	0.50	6	6.0	6	10;2	y	ENSMUSG00000118332.2	Fam220a	chr5	protein_coding	family with sequence similarity 220, member A
known_NIR_14525	chr5	143843573	143846519	-	143843573	143846399	A5SS	ENSMUST00000031613.11	known	0.18	6	27	6	27	y	0.26	12	34	12	34	y	0.27	24	65	24	65	y	0.29	14	34	14	34	y	0.25	10	30	10	30	y	0.19	7	30	7	30	y	0.27	16	44	16	44	y	0.28	8	21	8	21	y	0.30	12	28	12	28	y	0.27	12	32	12	32	y	0.21	7	27	7	27	y	0.41	15	22	15	22	y	ENSMUSG00000029610.14	Aimp2	chr5	protein_coding	aminoacyl tRNA synthetase complex-interacting multifunctional protein 2
known_NIR_14526	chr5	143862319	143864917	+	143862891	143864917	A5SS	ENSMUST00000148011.8	known	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.14	1	6	1	6	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.33	4	8	4	8	y	-	-	-	-	-	-	0.67	2	1	2	1	n	ENSMUSG00000079109.12	Pms2	chr5	protein_coding	PMS1 homolog2, mismatch repair system component
known_NIR_14527	chr5	144727997	144728081	+	144727997	144728084	A3SS	ENSMUST00000100467.10	known	0.80	4	1	4	1	n	-	-	-	-	-	-	0.56	5	4	5	4	n	0.67	4	2	4	2	n	0.70	7	3	7	3	y	-	-	-	-	-	-	1.00	2	0	2	0	n	1.00	5	0	5	0	n	0.50	1	1	1	1	n	0.78	7	2	7	2	n	1.00	1	0	1	0	n	1.00	4	0	4	0	n	ENSMUSG00000045482.17	Trrap	chr5	protein_coding	transformation/transcription domain-associated protein
known_NIR_14528	chr5	144776439	144777148	+	144776406	144777148	A5SS	ENSMUST00000100467.10	known	0.29	5	12	5	12	y	0.38	5	8	5	8	y	0.00	0	15	0	15	n	0.17	4	19	4	19	y	0.14	3	18	3	18	y	0.15	2	11	2	11	y	0.30	6	14	6	14	y	0.27	4	11	4	11	y	0.54	7	6	7	6	y	0.23	5	17	5	17	y	0.12	3	21	3	21	y	0.23	3	10	3	10	y	ENSMUSG00000045482.17	Trrap	chr5	protein_coding	transformation/transcription domain-associated protein
known_NIR_14529	chr5	144781099	144782279	+	144781099	144782225	A3SS	ENSMUST00000100467.10	known	0.10	2	18	2	18	y	0.00	0	15	0	15	n	0.00	0	18	0	18	n	0.19	3	13	3	13	y	0.04	1	22	1	22	n	0.00	0	8	0	8	n	0.13	4	27	4	27	y	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	35	0	35	n	0.00	0	18	0	18	n	0.00	0	21	0	21	n	ENSMUSG00000045482.17	Trrap	chr5	protein_coding	transformation/transcription domain-associated protein
known_NIR_14530	chr5	144794108	144794195	+	144793900	144794195	A5SS	ENSMUST00000100467.10	known	0.20	4	16	4	16	y	0.35	12	22	12	22	y	0.36	10	18	10	18	y	0.26	6	17	6	17	y	0.33	13	27	13	27	y	0.14	3	18	3	18	y	0.32	12	25	12	25	y	0.18	2	9	2	9	y	0.30	7	16	7	16	y	0.33	17	35	17	35	y	0.14	3	19	3	19	y	0.31	11	24	11	24	y	ENSMUSG00000045482.17	Trrap	chr5	protein_coding	transformation/transcription domain-associated protein
known_NIR_14531	chr5	144817510	144818428	-	144817519	144818428	A3SS	ENSMUST00000110677.8	known	0.18	4	18	4	18	y	0.09	2	21	2	21	y	0.17	4	20	4	20	y	0.14	3	18	3	18	y	0.21	9	33	9	33	y	0.00	0	12	0	12	n	0.04	1	24	1	24	n	0.00	0	14	0	14	n	0.23	5	17	5	17	y	0.26	12	35	12	35	y	0.26	7	20	7	20	y	0.39	11	17	11	17	y	ENSMUSG00000038780.15	Smurf1	chr5	protein_coding	SMAD specific E3 ubiquitin protein ligase 1
known_NIR_14532	chr5	144828323	144831284	-	144828323;144830117	144829971;144831284	ES	ENSMUST00000085684.11	known	0.00	0	21.0	0	27;15	n	0.00	0	9.0	0	12;6	n	0.06	1	17.0	1	14;20	n	0.00	0	13.5	0	12;15	n	0.07	2	27.5	2	33;22	y	0.00	0	12.0	0	17;7	n	0.11	2	16.0	2	16;16	y	0.00	0	14.5	0	14;15	n	0.00	0	10.0	0	8;12	n	0.00	0	24.0	0	26;22	n	0.00	0	10.0	0	7;13	n	0.06	1	17.0	1	22;12	n	ENSMUSG00000038780.15	Smurf1	chr5	protein_coding	SMAD specific E3 ubiquitin protein ligase 1
known_NIR_14533	chr5	145020782	145029268	+	145020782;145028056	145027963;145029268	ES	ENSMUST00000031625.15	known	0.00	0	150.5	0	126;175	n	0.00	0	144.0	0	135;153	n	0.00	0	194.5	0	188;201	n	0.00	0	155.0	0	147;163	n	0.00	0	209.5	0	177;242	n	0.01	1	89.0	1	78;100	n	0.01	1	181.0	1	169;193	n	0.00	0	140.0	0	135;145	n	0.00	0	124.5	0	133;116	n	0.00	0	199.0	0	187;211	n	0.01	2	158.5	2	140;177	y	0.00	0	202.5	0	182;223	n	ENSMUSG00000029621.15	Arpc1a	chr5	protein_coding	actin related protein 2/3 complex, subunit 1A
known_NIR_14534	chr5	145034133	145035440	+	145034133	145037867	A3SS	ENSMUST00000031625.15	known	0.00	0	131	0	131	n	0.00	0	158	0	158	n	0.01	1	144	1	144	n	0.01	1	111	1	111	n	0.00	0	196	0	196	n	0.02	2	97	2	97	y	0.01	2	142	2	142	y	0.00	0	111	0	111	n	0.00	0	127	0	127	n	0.00	0	222	0	222	n	0.01	2	161	2	161	y	0.00	0	164	0	164	n	ENSMUSG00000029621.15	Arpc1a	chr5	protein_coding	actin related protein 2/3 complex, subunit 1A
known_NIR_14535	chr5	145051233	145058467	+	145051151	145058467	A5SS	ENSMUST00000085679.13	known	0.00	0	112	0	112	n	0.00	0	107	0	107	n	0.01	2	212	2	212	y	0.00	0	102	0	102	n	0.00	0	183	0	183	n	0.00	0	121	0	121	n	0.00	0	170	0	170	n	0.00	0	116	0	116	n	0.00	0	107	0	107	n	0.00	0	182	0	182	n	0.00	0	119	0	119	n	0.00	0	170	0	170	n	ENSMUSG00000029622.17	Arpc1b	chr5	protein_coding	actin related protein 2/3 complex, subunit 1B
known_NIR_14536	chr5	145061100	145061397	+	145060601	145061397	A5SS	ENSMUST00000085679.13	known	0.00	0	119	0	119	n	0.00	0	120	0	120	n	0.00	0	230	0	230	n	0.00	0	85	0	85	n	0.01	2	178	2	178	y	0.00	0	117	0	117	n	0.00	0	138	0	138	n	0.00	0	90	0	90	n	0.00	0	101	0	101	n	0.00	0	141	0	141	n	0.00	0	109	0	109	n	0.00	0	165	0	165	n	ENSMUSG00000029622.17	Arpc1b	chr5	protein_coding	actin related protein 2/3 complex, subunit 1B
known_NIR_14537	chr5	145062594	145062689	+	145062594	145062701	A3SS	ENSMUST00000085679.13	known	0.01	2	176	2	176	y	0.00	0	191	0	191	n	0.01	2	316	2	316	y	0.00	0	141	0	141	n	0.01	3	244	3	244	y	0.01	2	195	2	195	y	0.00	0	271	0	271	n	0.02	2	130	2	130	y	0.00	0	143	0	143	n	0.00	1	213	1	213	n	0.01	1	189	1	189	n	0.02	4	242	4	242	y	ENSMUSG00000029622.17	Arpc1b	chr5	protein_coding	actin related protein 2/3 complex, subunit 1B
known_NIR_14538	chr5	145064536	145067257	+	145064536	145064631	3pMXE	ENSMUST00000085679.13	known	0.00	0	164	0	164	n	0.00	0	180	0	180	n	0.00	0	332	0	332	n	0.00	0	137	0	137	n	0.00	0	223	0	223	n	0.00	0	133	0	133	n	0.00	1	264	1	264	n	0.00	0	152	0	152	n	0.00	0	189	0	189	n	0.00	0	218	0	218	n	0.02	3	179	3	179	y	0.00	0	235	0	235	n	ENSMUSG00000029622.17	Arpc1b	chr5	protein_coding	actin related protein 2/3 complex, subunit 1B
known_NIR_14539	chr5	145077373	145078115	+	145077252	145078115	A5SS	ENSMUST00000162594.8	known	0.21	32	119	32	119	y	0.20	24	94	24	94	y	0.40	55	81	55	81	y	0.24	28	90	28	90	y	0.25	43	129	43	129	y	0.29	24	58	24	58	y	0.21	36	136	36	136	y	0.21	14	54	14	54	y	0.20	27	111	27	111	y	0.21	29	112	29	112	y	0.28	31	79	31	79	y	0.23	32	105	32	105	y	ENSMUSG00000038722.18	Bud31	chr5	protein_coding	BUD31 homolog
known_NIR_14540	chr5	145078170	145079258	+	145078246	145079258	A5SS	ENSMUST00000162594.8	known	0.00	1	263	1	263	n	0.02	4	259	4	259	y	0.05	12	230	12	230	y	0.01	2	241	2	241	y	0.03	8	265	8	265	y	0.04	4	110	4	110	y	0.00	1	260	1	260	n	0.03	5	149	5	149	y	0.02	3	194	3	194	y	0.01	3	262	3	262	y	0.01	2	202	2	202	y	0.03	8	240	8	240	y	ENSMUSG00000038722.18	Bud31	chr5	protein_coding	BUD31 homolog
known_NIR_14541	chr5	145079377	145083253	+	145079377	145081709	3pMXE	ENSMUST00000161974.2	known	0.01	5	424	5	424	y	0.01	6	406	6	406	y	0.01	5	409	5	409	y	0.01	5	356	5	356	y	0.01	5	394	5	394	y	0.01	3	230	3	230	y	0.01	3	397	3	397	y	0.01	3	241	3	241	y	0.01	4	295	4	295	y	0.02	7	399	7	399	y	0.00	1	329	1	329	n	0.02	6	344	6	344	y	ENSMUSG00000038722.18	Bud31	chr5	protein_coding	BUD31 homolog
known_NIR_14542	chr5	145079377	145083253	+	145079377;145081831	145081709;145083253	ES	ENSMUST00000162594.8	known	0.01	5	411.0	5	424;398	y	0.02	6	387.5	6	406;369	y	0.01	5	422.5	5	409;436	y	0.01	5	365.5	5	356;375	y	0.01	5	407.5	5	394;421	y	0.01	3	213.0	3	230;196	y	0.01	3	423.5	3	397;450	y	0.01	3	237.0	3	241;233	y	0.01	4	296.5	4	295;298	y	0.02	7	386.0	7	399;373	y	0.00	1	356.0	1	329;383	n	0.02	6	356.0	6	344;368	y	ENSMUSG00000038722.18	Bud31	chr5	protein_coding	BUD31 homolog
known_NIR_14543	chr5	145079377	145083253	+	145081831	145083253	5pMXE	ENSMUST00000160840.2	known	0.01	5	398	5	398	y	0.02	6	369	6	369	y	0.01	5	436	5	436	y	0.01	5	375	5	375	y	0.01	5	421	5	421	y	0.02	3	196	3	196	y	0.01	3	450	3	450	y	0.01	3	233	3	233	y	0.01	4	298	4	298	y	0.02	7	373	7	373	y	0.00	1	383	1	383	n	0.02	6	368	6	368	y	ENSMUSG00000038722.18	Bud31	chr5	protein_coding	BUD31 homolog
known_NIR_14544	chr5	145114112	145115568	+	145114112	145115646	A3SS	ENSMUST00000160629.8	known	0.18	3	14	3	14	y	0.06	1	17	1	17	n	0.00	0	16	0	16	n	0.00	0	17	0	17	n	0.05	1	20	1	20	n	0.11	1	8	1	8	n	0.06	1	15	1	15	n	0.20	3	12	3	12	y	0.00	0	11	0	11	n	0.00	0	31	0	31	n	0.12	2	14	2	14	y	0.00	0	17	0	17	n	ENSMUSG00000029625.17	Cpsf4	chr5	protein_coding	cleavage and polyadenylation specific factor 4
known_NIR_14545	chr5	145114112	145115643	+	145114112	145115568	A3SS	ENSMUST00000160422.8	known	0.89	25	3	25	3	y	0.96	25	1	25	1	n	1.00	26	0	26	0	n	1.00	23	0	23	0	n	0.96	22	1	22	1	n	0.90	9	1	9	1	n	0.96	27	1	27	1	n	0.83	15	3	15	3	y	1.00	12	0	12	0	n	1.00	25	0	25	0	n	0.93	27	2	27	2	y	1.00	32	0	32	0	n	ENSMUSG00000029625.17	Cpsf4	chr5	protein_coding	cleavage and polyadenylation specific factor 4
known_NIR_14546	chr5	145114112	145115643	+	145114112	145115646	A3SS	ENSMUST00000160629.8	known	0.64	25	14	25	14	y	0.60	25	17	25	17	y	0.62	26	16	26	16	y	0.57	23	17	23	17	y	0.52	22	20	22	20	y	0.53	9	8	9	8	y	0.64	27	15	27	15	y	0.56	15	12	15	12	y	0.52	12	11	12	11	y	0.45	25	31	25	31	y	0.66	27	14	27	14	y	0.65	32	17	32	17	y	ENSMUSG00000029625.17	Cpsf4	chr5	protein_coding	cleavage and polyadenylation specific factor 4
known_NIR_14547	chr5	145124043;145125068	145125003;145128313	-	145124043	145128313	cassetteExon	ENSMUST00000161741.8	known	0.01	6.5	740	10;3	740	y	0.00	4.0	808	4;4	808	y	0.00	2.5	529	4;1	529	n	0.01	4.5	795	6;3	795	y	0.00	4.0	895	8;0	895	n	0.01	6.0	434	8;4	434	y	0.00	3.0	1066	5;1	1066	n	0.01	5.0	479	7;3	479	y	0.00	0.5	755	0;1	755	n	0.00	3.5	1080	5;2	1080	y	0.00	1.0	964	1;1	964	n	0.00	3.5	980	7;0	980	n	ENSMUSG00000038690.16	Atp5j2	chr5	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2
known_NIR_14548	chr5	145124043;145125132	145125003;145128313	-	145124043	145128313	cassetteExon	ENSMUST00000161741.8	known	0.01	6.5	740	10;3	740	y	0.00	3.5	808	4;3	808	y	0.01	3.0	529	4;2	529	y	0.00	3.5	795	6;1	795	n	0.01	5.5	895	8;3	895	y	0.01	5.5	434	8;3	434	y	0.00	5.0	1066	5;5	1066	y	0.01	4.5	479	7;2	479	y	0.00	0.0	755	0;0	755	n	0.00	3.5	1080	5;2	1080	y	0.00	0.5	964	1;0	964	n	0.01	6.0	980	7;5	980	y	ENSMUSG00000038690.16	Atp5j2	chr5	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2
known_NIR_14549	chr5	145142518	145144373	+	145142518	145144386	A3SS	ENSMUST00000085671.10	known	0.00	0	9	0	9	n	0.36	4	7	4	7	y	0.04	1	24	1	24	n	0.20	3	12	3	12	y	0.11	2	17	2	17	y	0.06	1	15	1	15	n	0.00	0	24	0	24	n	0.08	1	11	1	11	n	0.00	0	18	0	18	n	0.27	4	11	4	11	y	0.20	4	16	4	16	y	0.36	4	7	4	7	y	ENSMUSG00000055991.16	Zkscan5	chr5	protein_coding	zinc finger with KRAB and SCAN domains 5
known_NIR_14550	chr5	145144518	145148556	+	145144518	145155097	A3SS	ENSMUST00000031601.8	known	1.00	9	0	9	0	n	0.92	11	1	11	1	n	1.00	13	0	13	0	n	1.00	10	0	10	0	n	0.94	15	1	15	1	n	1.00	10	0	10	0	n	1.00	22	0	22	0	n	0.93	13	1	13	1	n	0.88	15	2	15	2	y	0.95	18	1	18	1	n	1.00	14	0	14	0	n	0.89	8	1	8	1	n	ENSMUSG00000055991.16	Zkscan5	chr5	protein_coding	zinc finger with KRAB and SCAN domains 5
known_NIR_14551	chr5	145149405	145155097	+	145149450	145155097	A5SS	ENSMUST00000085671.10	known	0.00	0	12	0	12	n	0.18	2	9	2	9	y	0.00	0	12	0	12	n	0.22	2	7	2	7	n	0.10	2	19	2	19	y	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.00	0	11	0	11	n	0.12	1	7	1	7	n	0.12	2	15	2	15	y	0.00	0	17	0	17	n	0.00	0	18	0	18	n	ENSMUSG00000055991.16	Zkscan5	chr5	protein_coding	zinc finger with KRAB and SCAN domains 5
known_NIR_14552	chr5	145170412	145172547	+	145170412	145172116	A3SS&ES	ENSMUST00000199322.5	known	0.11	3	24	3	24	y	0.23	5	17	5	17	y	0.12	4	28	4	28	y	0.17	7	35	7	35	y	0.10	6	52	6	52	y	0.11	4	33	4	33	y	0.14	5	30	5	30	y	0.16	5	26	5	26	y	0.10	3	26	3	26	y	0.20	10	41	10	41	y	0.10	3	26	3	26	y	0.13	4	27	4	27	y	ENSMUSG00000007812.17	Zfp655	chr5	protein_coding	zinc finger protein 655
known_NIR_14553	chr5	145170412	145172547	+	145170412	145179730	A3SS	ENSMUST00000167316.8	known	0.25	3	9	3	9	y	0.25	5	15	5	15	y	0.12	4	29	4	29	y	0.23	7	24	7	24	y	0.21	6	22	6	22	y	0.40	4	6	4	6	y	0.23	5	17	5	17	y	0.29	5	12	5	12	y	0.16	3	16	3	16	y	0.29	10	25	10	25	y	0.17	3	15	3	15	y	0.11	4	31	4	31	y	ENSMUSG00000007812.17	Zfp655	chr5	protein_coding	zinc finger protein 655
known_NIR_14554	chr5	145170412	145172547	+	145170412;145172201	145172116;145172547	ES	ENSMUST00000200039.5	known	0.12	3	22.5	3	24;21	y	0.19	5	21.5	5	17;26	y	0.14	4	25.0	4	28;22	y	0.16	7	35.5	7	35;36	y	0.12	6	45.0	6	52;38	y	0.14	4	24.5	4	33;16	y	0.15	5	29.0	5	30;28	y	0.16	5	25.5	5	26;25	y	0.10	3	27.5	3	26;29	y	0.21	10	38.5	10	41;36	y	0.10	3	26.0	3	26;26	y	0.13	4	26.5	4	27;26	y	ENSMUSG00000007812.17	Zfp655	chr5	protein_coding	zinc finger protein 655
known_NIR_14555	chr5	145170412	145173860	+	145170412	145172116	A3SS&ES	ENSMUST00000199322.5	known	0.04	1	24	1	24	n	0.00	0	17	0	17	n	0.12	4	28	4	28	y	0.00	0	35	0	35	n	0.02	1	52	1	52	n	0.03	1	33	1	33	n	0.06	2	30	2	30	y	0.04	1	26	1	26	n	0.04	1	26	1	26	n	0.09	4	41	4	41	y	0.10	3	26	3	26	y	0.04	1	27	1	27	n	ENSMUSG00000007812.17	Zfp655	chr5	protein_coding	zinc finger protein 655
known_NIR_14556	chr5	145170412	145173860	+	145170412	145179730	A3SS	ENSMUST00000167316.8	known	0.10	1	9	1	9	n	0.00	0	15	0	15	n	0.12	4	29	4	29	y	0.00	0	24	0	24	n	0.04	1	22	1	22	n	0.14	1	6	1	6	n	0.11	2	17	2	17	y	0.08	1	12	1	12	n	0.06	1	16	1	16	n	0.14	4	25	4	25	y	0.17	3	15	3	15	y	0.03	1	31	1	31	n	ENSMUSG00000007812.17	Zfp655	chr5	protein_coding	zinc finger protein 655
known_NIR_14557	chr5	145170412	145173860	+	145170412;145172201	145172116;145173860	ES	ENSMUST00000196069.5	known	0.07	1	13.0	1	24;2	n	0.00	0	8.5	0	17;0	n	0.20	4	16.5	4	28;5	y	0.00	0	18.0	0	35;1	n	0.04	1	26.5	1	52;1	n	0.06	1	16.5	1	33;0	n	0.11	2	15.5	2	30;1	n	0.07	1	13.0	1	26;0	n	0.07	1	13.0	1	26;0	n	0.16	4	20.5	4	41;0	n	0.19	3	13.0	3	26;0	n	0.07	1	13.5	1	27;0	n	ENSMUSG00000007812.17	Zfp655	chr5	protein_coding	zinc finger protein 655
known_NIR_14558	chr5	145170412;145172201	145172116;145179730	+	145170412	145179730	cassetteExon	ENSMUST00000167316.8	known	0.59	13.0	9	24;2	9	y	0.39	9.5	15	17;2	15	y	0.35	15.5	29	28;3	29	y	0.45	19.5	24	35;4	24	y	0.56	28.5	22	52;5	22	y	0.78	21.0	6	33;9	6	y	0.49	16.5	17	30;3	17	y	0.59	17.5	12	26;9	12	y	0.48	15.0	16	26;4	16	y	0.48	23.0	25	41;5	25	y	0.47	13.5	15	26;1	15	n	0.37	18.0	31	27;9	31	y	ENSMUSG00000007812.17	Zfp655	chr5	protein_coding	zinc finger protein 655
known_NIR_14559	chr5	145170412;145172673	145172547;145173860	+	145170412	145173860	cassetteExon	ENSMUST00000199003.5	known	0.93	13.0	1	3;23	1	n	1.00	12.5	0	5;20	0	n	0.77	13.5	4	4;23	4	y	1.00	18.5	0	7;30	0	n	0.96	24.5	1	6;43	1	n	0.94	16.5	1	4;29	1	n	0.91	20.0	2	5;35	2	y	0.95	19.5	1	5;34	1	n	0.94	14.5	1	3;26	1	n	0.86	24.5	4	10;39	4	y	0.86	19.0	3	3;35	3	y	0.94	16.0	1	4;28	1	n	ENSMUSG00000007812.17	Zfp655	chr5	protein_coding	zinc finger protein 655
known_NIR_14560	chr5	145170412;145172673	145172547;145173860	+	145170412;145172201	145172116;145173860	MXE	ENSMUST00000196069.5	known	0.50	13.0	13.0	3;23	24;2	y	0.60	12.5	8.5	5;20	17;0	n	0.45	13.5	16.5	4;23	28;5	y	0.51	18.5	18.0	7;30	35;1	n	0.48	24.5	26.5	6;43	52;1	n	0.50	16.5	16.5	4;29	33;0	n	0.56	20.0	15.5	5;35	30;1	n	0.60	19.5	13.0	5;34	26;0	n	0.53	14.5	13.0	3;26	26;0	n	0.54	24.5	20.5	10;39	41;0	n	0.59	19.0	13.0	3;35	26;0	n	0.54	16.0	13.5	4;28	27;0	n	ENSMUSG00000007812.17	Zfp655	chr5	protein_coding	zinc finger protein 655
known_NIR_14561	chr5	145172201	145172547	+	145172201	145179730	A3SS	ENSMUST00000199322.5	known	0.91	21	2	21	2	y	0.93	26	2	26	2	y	0.88	22	3	22	3	y	0.90	36	4	36	4	y	0.88	38	5	38	5	y	0.64	16	9	16	9	y	0.90	28	3	28	3	y	0.74	25	9	25	9	y	0.88	29	4	29	4	y	0.88	36	5	36	5	y	0.96	26	1	26	1	n	0.74	26	9	26	9	y	ENSMUSG00000007812.17	Zfp655	chr5	protein_coding	zinc finger protein 655
known_NIR_14562	chr5	145172201	145173860	+	145172201;145172673	145172547;145173860	ES	ENSMUST00000200039.5	known	0.08	2	22.0	2	21;23	y	0.00	0	23.0	0	26;20	n	0.18	5	22.5	5	22;23	y	0.03	1	33.0	1	36;30	n	0.02	1	40.5	1	38;43	n	0.00	0	22.5	0	16;29	n	0.03	1	31.5	1	28;35	n	0.00	0	29.5	0	25;34	n	0.00	0	27.5	0	29;26	n	0.00	0	37.5	0	36;39	n	0.00	0	30.5	0	26;35	n	0.00	0	27.0	0	26;28	n	ENSMUSG00000007812.17	Zfp655	chr5	protein_coding	zinc finger protein 655
known_NIR_14563	chr5	145220594	145223118	+	145220590	145223118	A5SS	ENSMUST00000200246.2	known	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.15	2	11	2	11	y	0.08	1	12	1	12	n	0.10	2	19	2	19	y	0.00	0	10	0	10	n	0.12	1	7	1	7	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.22	2	7	2	7	n	0.40	2	3	2	3	n	0.11	2	16	2	16	y	ENSMUSG00000070420.5	Zscan25	chr5	protein_coding	zinc finger and SCAN domain containing 25
known_NIR_14564	chr5	145914512	145918194	-	145914512	145935297	A5SS	ENSMUST00000138870.2	known	1.00	1180	1	1180	1	n	1.00	996	1	996	1	n	1.00	104	0	104	0	n	1.00	1008	0	1008	0	n	1.00	1068	0	1068	0	n	1.00	174	0	174	0	n	1.00	1095	3	1095	3	y	1.00	199	0	199	0	n	1.00	1853	3	1853	3	y	1.00	1757	0	1757	0	n	1.00	2496	10	2496	10	y	1.00	2269	5	2269	5	y	ENSMUSG00000029630.16	Cyp3a25	chr5	protein_coding	cytochrome P450, family 3, subfamily a, polypeptide 25
known_NIR_14565	chr5	145929846;145930171	145930083;145931675	-	145929846	145931675	cassetteExon	ENSMUST00000145062.8	known	0.71	519.0	217	497;541	217	y	0.66	324.0	170	279;369	170	y	0.45	47.0	58	48;46	58	y	0.75	635.0	211	569;701	211	y	0.67	630.5	315	574;687	315	y	0.37	51.0	86	53;49	86	y	0.65	457.0	241	433;481	241	y	0.56	96.5	77	88;105	77	y	0.65	899.5	488	811;988	488	y	0.67	910.0	440	804;1016	440	y	0.65	854.0	457	800;908	457	y	0.76	1421.0	442	1319;1523	442	y	ENSMUSG00000029630.16	Cyp3a25	chr5	protein_coding	cytochrome P450, family 3, subfamily a, polypeptide 25
known_NIR_14566	chr5	145931788	145935297	-	145914512	145935297	A3SS	ENSMUST00000138870.2	known	1.00	1177	1	1177	1	n	1.00	781	1	781	1	n	1.00	133	0	133	0	n	1.00	1363	0	1363	0	n	1.00	1405	0	1405	0	n	1.00	221	0	221	0	n	1.00	1007	3	1007	3	y	1.00	241	0	241	0	n	1.00	2108	3	2108	3	y	1.00	2032	0	2032	0	n	1.00	2165	10	2165	10	y	1.00	2713	5	2713	5	y	ENSMUSG00000029630.16	Cyp3a25	chr5	protein_coding	cytochrome P450, family 3, subfamily a, polypeptide 25
known_NIR_14567	chr5	146031270;146033150	146033062;146033387	+	146031270	146033387	cassetteExon	ENSMUST00000199212.5	known	1.00	42.5	0	51;34	0	n	1.00	17.5	0	18;17	0	n	1.00	4.5	0	5;4	0	n	1.00	56.0	0	53;59	0	n	0.98	54.0	1	68;40	1	n	1.00	8.0	0	11;5	0	n	0.97	36.0	1	42;30	1	n	1.00	5.0	0	4;6	0	n	0.95	78.5	4	101;56	4	y	0.97	83.0	3	86;80	3	y	0.98	122.5	3	121;124	3	y	1.00	98.5	0	99;98	0	n	ENSMUSG00000061292.11	Cyp3a59	chr5	protein_coding	cytochrome P450, family 3, subfamily a, polypeptide 59
known_NIR_14568	chr5	146154906;146156152	146156075;146157212	-	146154906	146157212	cassetteExon	ENSMUST00000161859.8	known	0.04	1.5	41	3;0	41	n	0.05	1.5	29	2;1	29	n	0.02	1.0	52	1;1	52	n	0.03	1.5	57	2;1	57	n	0.04	2.0	50	2;2	50	y	0.05	1.5	30	2;1	30	n	0.01	0.5	51	0;1	51	n	0.00	0.0	45	0;0	45	n	0.03	1.5	44	2;1	44	n	0.01	0.5	96	1;0	96	n	0.01	0.5	40	0;1	40	n	0.07	4.5	59	6;3	59	y	ENSMUSG00000029634.16	Rnf6	chr5	protein_coding	ring finger protein (C3H2C3 type) 6
known_NIR_14569	chr5	146157294	146157548	-	146157294	146158030	A5SS	ENSMUST00000161859.8	known	0.05	1	21	1	21	n	0.18	3	14	3	14	y	0.00	0	21	0	21	n	0.24	10	31	10	31	y	0.04	1	23	1	23	n	0.00	0	23	0	23	n	0.18	4	18	4	18	y	0.00	0	28	0	28	n	0.10	3	26	3	26	y	0.05	2	40	2	40	y	0.00	0	26	0	26	n	0.11	4	33	4	33	y	ENSMUSG00000029634.16	Rnf6	chr5	protein_coding	ring finger protein (C3H2C3 type) 6
known_NIR_14570	chr5	146157294	146157750	-	146157294	146157548	5pMXE	ENSMUST00000169407.9	known	0.75	3	1	3	1	n	0.00	0	3	0	3	n	1.00	5	0	5	0	n	0.00	0	10	0	10	n	0.83	5	1	5	1	n	-	-	-	-	-	-	0.20	1	4	1	4	n	1.00	3	0	3	0	n	0.00	0	3	0	3	n	0.80	8	2	8	2	y	1.00	4	0	4	0	n	0.43	3	4	3	4	n	ENSMUSG00000029634.16	Rnf6	chr5	protein_coding	ring finger protein (C3H2C3 type) 6
known_NIR_14571	chr5	146157294	146157750	-	146157294	146158030	A5SS	ENSMUST00000161859.8	known	0.12	3	21	3	21	y	0.00	0	14	0	14	n	0.19	5	21	5	21	y	0.00	0	31	0	31	n	0.18	5	23	5	23	y	0.00	0	23	0	23	n	0.05	1	18	1	18	n	0.10	3	28	3	28	y	0.00	0	26	0	26	n	0.17	8	40	8	40	y	0.13	4	26	4	26	y	0.08	3	33	3	33	y	ENSMUSG00000029634.16	Rnf6	chr5	protein_coding	ring finger protein (C3H2C3 type) 6
known_NIR_14572	chr5	146205096	146208405	+	146205135	146208405	A5SS	ENSMUST00000162494.8	known	0.18	9	40	9	40	y	0.12	4	28	4	28	y	0.13	9	58	9	58	y	0.02	1	50	1	50	n	0.05	3	56	3	56	y	0.08	2	22	2	22	y	0.04	2	43	2	43	y	0.04	2	43	2	43	y	0.09	4	39	4	39	y	0.16	10	51	10	51	y	0.12	4	28	4	28	y	0.16	12	64	12	64	y	ENSMUSG00000029635.16	Cdk8	chr5	protein_coding	cyclin-dependent kinase 8
known_NIR_14573	chr5	146223049	146229449	+	146223049	146229434	A3SS	ENSMUST00000162494.8	known	0.16	9	47	9	47	y	0.08	2	24	2	24	y	0.04	2	46	2	46	y	0.12	5	36	5	36	y	0.08	4	47	4	47	y	0.00	0	23	0	23	n	0.08	3	33	3	33	y	0.00	0	20	0	20	n	0.04	2	46	2	46	y	0.17	10	49	10	49	y	0.15	5	29	5	29	y	0.09	5	52	5	52	y	ENSMUSG00000029635.16	Cdk8	chr5	protein_coding	cyclin-dependent kinase 8
known_NIR_14574	chr5	146223049	146229464	+	146223049	146229434	A3SS	ENSMUST00000162494.8	known	0.00	0	47	0	47	n	0.04	1	24	1	24	n	0.08	4	46	4	46	y	0.00	0	36	0	36	n	0.08	4	47	4	47	y	0.08	2	23	2	23	y	0.06	2	33	2	33	y	0.00	0	20	0	20	n	0.06	3	46	3	46	y	0.09	5	49	5	49	y	0.06	2	29	2	29	y	0.04	2	52	2	52	y	ENSMUSG00000029635.16	Cdk8	chr5	protein_coding	cyclin-dependent kinase 8
known_NIR_14575	chr5	146223049	146229464	+	146223049	146229449	A3SS	ENSMUST00000161181.8	known	0.00	0	9	0	9	n	0.33	1	2	1	2	n	0.67	4	2	4	2	n	0.00	0	5	0	5	n	0.50	4	4	4	4	n	1.00	2	0	2	0	n	0.40	2	3	2	3	n	-	-	-	-	-	-	0.60	3	2	3	2	n	0.33	5	10	5	10	y	0.29	2	5	2	5	n	0.29	2	5	2	5	n	ENSMUSG00000029635.16	Cdk8	chr5	protein_coding	cyclin-dependent kinase 8
known_NIR_14576	chr5	146770376	146770994	+	146769981	146770994	A5SS	ENSMUST00000035983.12	known	0.03	15	545	15	545	y	0.01	5	579	5	579	y	0.01	6	785	6	785	y	0.01	7	486	7	486	y	0.02	12	691	12	691	y	0.01	4	411	4	411	y	0.01	6	797	6	797	y	0.00	2	409	2	409	y	0.01	3	516	3	516	y	0.02	10	638	10	638	y	0.03	16	602	16	602	y	0.00	2	632	2	632	y	ENSMUSG00000041453.13	Rpl21	chr5	protein_coding	ribosomal protein L21
known_NIR_14577	chr5	146770550	146770994	+	146769981	146770994	A5SS	ENSMUST00000035983.12	known	0.00	0	545	0	545	n	0.01	4	579	4	579	y	0.01	6	785	6	785	y	0.01	5	486	5	486	y	0.00	2	691	2	691	y	0.00	0	411	0	411	n	0.01	9	797	9	797	y	0.00	2	409	2	409	y	0.01	7	516	7	516	y	0.00	3	638	3	638	y	0.00	2	602	2	602	y	0.01	5	632	5	632	y	ENSMUSG00000041453.13	Rpl21	chr5	protein_coding	ribosomal protein L21
known_NIR_14578	chr5	146770550	146770994	+	146770376	146770994	A5SS	ENSMUST00000075453.9	known	0.00	0	15	0	15	n	0.44	4	5	4	5	n	0.50	6	6	6	6	y	0.42	5	7	5	7	y	0.14	2	12	2	12	y	0.00	0	4	0	4	n	0.60	9	6	9	6	y	0.50	2	2	2	2	n	0.70	7	3	7	3	y	0.23	3	10	3	10	y	0.11	2	16	2	16	y	0.71	5	2	5	2	n	ENSMUSG00000041453.13	Rpl21	chr5	protein_coding	ribosomal protein L21
known_NIR_14579	chr5	146896086	146900522	-	146896086	146900031	A5SS&ES	ENSMUST00000016654.9	known	0.56	10	8	10	8	y	0.59	13	9	13	9	y	0.30	10	23	10	23	y	0.67	12	6	12	6	y	0.52	17	16	17	16	y	0.40	4	6	4	6	y	0.67	16	8	16	8	y	0.77	17	5	17	5	y	0.49	17	18	17	18	y	0.52	14	13	14	13	y	0.64	18	10	18	10	y	0.64	21	12	21	12	y	ENSMUSG00000016510.12	Mtif3	chr5	protein_coding	mitochondrial translational initiation factor 3
known_NIR_14580	chr5	146896086	146900533	-	146896086	146900031	A5SS&ES	ENSMUST00000110564.8	known	0.64	14	8	14	8	y	0.40	6	9	6	9	y	0.36	13	23	13	23	y	0.71	15	6	15	6	y	0.54	19	16	19	16	y	0.50	6	6	6	6	y	0.38	5	8	5	8	y	0.62	8	5	8	5	y	0.53	20	18	20	18	y	0.62	21	13	21	13	y	0.67	20	10	20	10	y	0.57	16	12	16	12	y	ENSMUSG00000016510.12	Mtif3	chr5	protein_coding	mitochondrial translational initiation factor 3
known_NIR_14581	chr5	146896086	146900533	-	146896086	146900522	A5SS	ENSMUST00000066675.10	known	0.58	14	10	14	10	y	0.32	6	13	6	13	y	0.57	13	10	13	10	y	0.56	15	12	15	12	y	0.53	19	17	19	17	y	0.60	6	4	6	4	y	0.24	5	16	5	16	y	0.32	8	17	8	17	y	0.54	20	17	20	17	y	0.60	21	14	21	14	y	0.53	20	18	20	18	y	0.43	16	21	16	21	y	ENSMUSG00000016510.12	Mtif3	chr5	protein_coding	mitochondrial translational initiation factor 3
known_NIR_14582	chr5	146896086	146900533	-	146896086;146900190	146900031;146900533	ES	ENSMUST00000016654.9	known	0.72	14	5.5	14	8;3	y	0.50	6	6.0	6	9;3	y	0.49	13	13.5	13	23;4	y	0.75	15	5.0	15	6;4	y	0.68	19	9.0	19	16;2	y	0.55	6	5.0	6	6;4	y	0.48	5	5.5	5	8;3	y	0.57	8	6.0	8	5;7	y	0.67	20	10.0	20	18;2	y	0.75	21	7.0	21	13;1	n	0.74	20	7.0	20	10;4	y	0.68	16	7.5	16	12;3	y	ENSMUSG00000016510.12	Mtif3	chr5	protein_coding	mitochondrial translational initiation factor 3
known_NIR_14583	chr5	146896086	146900576	-	146896086	146900031	A5SS&ES	ENSMUST00000016654.9	known	0.00	0	8	0	8	n	0.10	1	9	1	9	n	0.00	0	23	0	23	n	0.00	0	6	0	6	n	0.06	1	16	1	16	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.20	3	12	3	12	y	ENSMUSG00000016510.12	Mtif3	chr5	protein_coding	mitochondrial translational initiation factor 3
known_NIR_14584	chr5	146896086	146900576	-	146896086	146900522	A5SS	ENSMUST00000066675.10	known	0.00	0	10	0	10	n	0.07	1	13	1	13	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.06	1	17	1	17	n	0.00	0	4	0	4	n	0.00	0	16	0	16	n	0.00	0	17	0	17	n	0.00	0	17	0	17	n	0.00	0	14	0	14	n	0.00	0	18	0	18	n	0.12	3	21	3	21	y	ENSMUSG00000016510.12	Mtif3	chr5	protein_coding	mitochondrial translational initiation factor 3
known_NIR_14585	chr5	146896086	146900576	-	146896086	146900533	A5SS	ENSMUST00000110566.2	known	0.00	0	14	0	14	n	0.14	1	6	1	6	n	0.00	0	13	0	13	n	0.00	0	15	0	15	n	0.05	1	19	1	19	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	20	0	20	n	0.00	0	21	0	21	n	0.00	0	20	0	20	n	0.16	3	16	3	16	y	ENSMUSG00000016510.12	Mtif3	chr5	protein_coding	mitochondrial translational initiation factor 3
known_NIR_14586	chr5	146896086;146900190	146900031;146900522	-	146896086	146900522	cassetteExon	ENSMUST00000066675.10	known	0.29	4.0	10	8;0	10	n	0.38	8.0	13	9;7	13	y	0.57	13.5	10	23;4	10	y	0.25	4.0	12	6;2	12	y	0.39	11.0	17	16;6	17	y	0.47	3.5	4	6;1	4	n	0.32	7.5	16	8;7	16	y	0.15	3.0	17	5;1	17	n	0.39	11.0	17	18;4	17	y	0.36	8.0	14	13;3	14	y	0.29	7.5	18	10;5	18	y	0.24	6.5	21	12;1	21	n	ENSMUSG00000016510.12	Mtif3	chr5	protein_coding	mitochondrial translational initiation factor 3
known_NIR_14587	chr5	146900190	146900522	-	146900190	146900533	A5SS	ENSMUST00000016654.9	known	0.00	0	3	0	3	n	0.70	7	3	7	3	y	0.50	4	4	4	4	n	0.33	2	4	2	4	n	0.75	6	2	6	2	n	0.20	1	4	1	4	n	0.70	7	3	7	3	y	0.12	1	7	1	7	n	0.67	4	2	4	2	n	0.75	3	1	3	1	n	0.56	5	4	5	4	n	0.25	1	3	1	3	n	ENSMUSG00000016510.12	Mtif3	chr5	protein_coding	mitochondrial translational initiation factor 3
known_NIR_14588	chr5	147014503	147038039	+	147014503	147015345	3pMXE	ENSMUST00000050970.4	known	0.48	140	152	140	152	y	0.49	135	142	135	142	y	0.43	127	170	127	170	y	0.44	110	140	110	140	y	0.42	144	197	144	197	y	0.51	95	90	95	90	y	0.45	171	207	171	207	y	0.55	89	72	89	72	y	0.41	94	137	94	137	y	0.47	160	182	160	182	y	0.45	124	151	124	151	y	0.42	147	205	147	205	y	ENSMUSG00000029642.12	Polr1d	chr5	protein_coding	polymerase (RNA) I polypeptide D
known_NIR_14589	chr5	147391998	147456315	+	147391998	147424921	3pMXE	ENSMUST00000177327.8	known	0.33	1	2	1	2	n	0.00	0	6	0	6	n	0.12	2	14	2	14	y	0.00	0	13	0	13	n	0.14	2	12	2	12	y	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.12	1	7	1	7	n	ENSMUSG00000029647.16	Pan3	chr5	protein_coding	PAN3 poly(A) specific ribonuclease subunit
known_NIR_14590	chr5	147391998	147456315	+	147391998;147425068	147424921;147456315	ES	ENSMUST00000031651.15	known	0.40	1	1.5	1	2;1	n	0.00	0	3.0	0	6;0	n	0.14	2	12.5	2	14;11	y	0.00	0	10.0	0	13;7	n	0.19	2	8.5	2	12;5	y	0.00	0	6.5	0	9;4	n	0.00	0	6.0	0	7;5	n	0.00	0	5.5	0	8;3	n	0.00	0	2.0	0	3;1	n	0.00	0	12.0	0	16;8	n	0.00	0	4.0	0	7;1	n	0.11	1	8.0	1	7;9	n	ENSMUSG00000029647.16	Pan3	chr5	protein_coding	PAN3 poly(A) specific ribonuclease subunit
known_NIR_14591	chr5	147425068;147440012	147439895;147456315	+	147425068	147456315	cassetteExon	ENSMUST00000031651.15	known	0.60	1.5	1	0;3	1	n	1.00	3.0	0	2;4	0	n	0.27	4.0	11	5;3	11	y	0.26	2.5	7	3;2	7	y	0.50	5.0	5	5;5	5	y	0.38	2.5	4	2;3	4	n	0.47	4.5	5	6;3	5	y	0.40	2.0	3	1;3	3	n	0.50	1.0	1	2;0	1	n	0.06	0.5	8	0;1	8	n	0.71	2.5	1	4;1	1	n	0.36	5.0	9	8;2	9	y	ENSMUSG00000029647.16	Pan3	chr5	protein_coding	PAN3 poly(A) specific ribonuclease subunit
known_NIR_14592	chr5	147474084	147476053	+	147473350	147476053	A5SS	ENSMUST00000031651.15	known	0.17	4	19	4	19	y	0.05	1	19	1	19	n	0.09	3	31	3	31	y	0.05	1	19	1	19	n	0.15	4	22	4	22	y	0.16	3	16	3	16	y	0.11	2	17	2	17	y	0.25	2	6	2	6	n	0.00	0	19	0	19	n	0.08	1	12	1	12	n	0.12	2	14	2	14	y	0.04	1	23	1	23	n	ENSMUSG00000029647.16	Pan3	chr5	protein_coding	PAN3 poly(A) specific ribonuclease subunit
known_NIR_14593	chr5	147806323	147812274	+	147806323;147809469	147809376;147812274	ES	ENSMUST00000031654.10	known	0.00	0	771.0	0	854;688	n	0.00	0	856.0	0	942;770	n	0.00	0	617.0	0	693;541	n	0.00	0	781.5	0	889;674	n	0.00	2	894.5	2	1002;787	y	0.00	0	382.5	0	410;355	n	0.00	0	965.5	0	1050;881	n	0.00	0	349.5	0	402;297	n	0.00	0	687.0	0	784;590	n	0.00	3	1103.0	3	1268;938	y	0.00	2	929.5	2	1018;841	y	0.01	6	888.5	6	1030;747	y	ENSMUSG00000029649.11	Pomp	chr5	protein_coding	proteasome maturation protein
known_NIR_14594	chr5	147806323	147812274	+	147809469	147812274	5pMXE	ENSMUST00000202621.2	known	0.00	0	688	0	688	n	0.00	0	770	0	770	n	0.00	0	541	0	541	n	0.00	0	674	0	674	n	0.00	2	787	2	787	y	0.00	0	355	0	355	n	0.00	0	881	0	881	n	0.00	0	297	0	297	n	0.00	0	590	0	590	n	0.00	3	938	3	938	y	0.00	2	841	2	841	y	0.01	6	747	6	747	y	ENSMUSG00000029649.11	Pomp	chr5	protein_coding	proteasome maturation protein
known_NIR_14595	chr5	147830855	147831519	-	147830855	147831291	A5SS	ENSMUST00000031655.4	known	0.07	5	66	5	66	y	0.18	9	42	9	42	y	0.07	1	14	1	14	n	0.09	12	123	12	123	y	0.05	3	60	3	60	y	0.06	1	16	1	16	n	0.10	4	38	4	38	y	0.00	0	24	0	24	n	0.07	5	69	5	69	y	0.10	10	88	10	88	y	0.10	6	54	6	54	y	0.09	7	74	7	74	y	ENSMUSG00000029650.11	Slc46a3	chr5	protein_coding	solute carrier family 46, member 3
known_NIR_14596	chr5	147830855;147831406	147831291;147831519	-	147830855	147831519	cassetteExon	ENSMUST00000118527.8	known	0.88	37.0	5	66;8	5	y	0.72	23.5	9	42;5	9	y	0.88	7.0	1	14;0	1	n	0.85	68.5	12	123;14	12	y	0.92	34.0	3	60;8	3	y	0.90	9.5	1	16;3	1	n	0.84	21.0	4	38;4	4	y	1.00	13.0	0	24;2	0	n	0.89	41.0	5	69;13	5	y	0.83	49.0	10	88;10	10	y	0.84	32.5	6	54;11	6	y	0.86	42.0	7	74;10	7	y	ENSMUSG00000029650.11	Slc46a3	chr5	protein_coding	solute carrier family 46, member 3
known_NIR_14597	chr5	148448812	148488315	-	148448812	148488763	A5SS	ENSMUST00000079324.14	known	0.00	0	124	0	124	n	0.01	1	122	1	122	n	0.01	1	169	1	169	n	0.00	0	155	0	155	n	0.01	1	159	1	159	n	0.03	2	67	2	67	y	0.01	1	146	1	146	n	0.00	0	124	0	124	n	0.00	0	122	0	122	n	0.00	0	160	0	160	n	0.00	0	115	0	115	n	0.00	0	178	0	178	n	ENSMUSG00000001687.16	Ubl3	chr5	protein_coding	ubiquitin-like 3
known_NIR_14598	chr5	148987561	148988089	-	148987561	148989710	A5SS	ENSMUST00000085546.13	known	0.03	12	387	12	387	y	0.04	14	331	14	331	y	0.03	13	394	13	394	y	0.03	12	455	12	455	y	0.04	18	466	18	466	y	0.03	9	273	9	273	y	0.04	23	524	23	524	y	0.05	13	257	13	257	y	0.05	16	299	16	299	y	0.04	19	439	19	439	y	0.04	13	302	13	302	y	0.03	11	399	11	399	y	ENSMUSG00000066551.13	Hmgb1	chr5	protein_coding	high mobility group box 1
known_NIR_14599	chr5	148987561	148989148	-	148987561	148988089	5pMXE	ENSMUST00000093196.11	known	0.08	1	12	1	12	n	0.07	1	14	1	14	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.00	0	18	0	18	n	0.00	0	9	0	9	n	0.04	1	23	1	23	n	0.00	0	13	0	13	n	0.06	1	16	1	16	n	0.14	3	19	3	19	y	0.00	0	13	0	13	n	0.00	0	11	0	11	n	ENSMUSG00000066551.13	Hmgb1	chr5	protein_coding	high mobility group box 1
known_NIR_14600	chr5	148987561	148989148	-	148987561	148989710	A5SS	ENSMUST00000085546.13	known	0.00	1	387	1	387	n	0.00	1	331	1	331	n	0.00	0	394	0	394	n	0.00	0	455	0	455	n	0.00	0	466	0	466	n	0.00	0	273	0	273	n	0.00	1	524	1	524	n	0.00	0	257	0	257	n	0.00	1	299	1	299	n	0.01	3	439	3	439	y	0.00	0	302	0	302	n	0.00	0	399	0	399	n	ENSMUSG00000066551.13	Hmgb1	chr5	protein_coding	high mobility group box 1
known_NIR_14601	chr5	148987561	149118809	-	148987561	148988089	5pMXE	ENSMUST00000093196.11	known	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.07	1	13	1	13	n	0.14	2	12	2	12	y	0.00	0	18	0	18	n	0.00	0	9	0	9	n	0.00	0	23	0	23	n	0.13	2	13	2	13	y	0.00	0	16	0	16	n	0.00	0	19	0	19	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	ENSMUSG00000066551.13	Hmgb1	chr5	protein_coding	high mobility group box 1
known_NIR_14602	chr5	148987561	149118809	-	148987561	148989710	5pMXE	ENSMUST00000085546.13	known	0.00	0	387	0	387	n	0.00	0	331	0	331	n	0.00	1	394	1	394	n	0.00	2	455	2	455	y	0.00	0	466	0	466	n	0.00	0	273	0	273	n	0.00	0	524	0	524	n	0.01	2	257	2	257	y	0.00	0	299	0	299	n	0.00	0	439	0	439	n	0.00	0	302	0	302	n	0.00	0	399	0	399	n	ENSMUSG00000066551.13	Hmgb1	chr5	protein_coding	high mobility group box 1
known_NIR_14603	chr5	149121616	149122295	+	149121616	149125155	A3SS	ENSMUST00000121416.8	known	0.38	8	13	8	13	y	0.07	1	13	1	13	n	0.17	7	33	7	33	y	0.04	1	22	1	22	n	0.03	1	35	1	35	n	0.14	1	6	1	6	n	0.06	2	32	2	32	y	0.27	3	8	3	8	y	0.07	1	13	1	13	n	0.08	2	22	2	22	y	0.12	2	14	2	14	y	0.26	6	17	6	17	y	ENSMUSG00000041264.17	Uspl1	chr5	protein_coding	ubiquitin specific peptidase like 1
known_NIR_14604	chr5	149121616;149122471	149122295;149124518	+	149121616	149124518	cassetteExon	ENSMUST00000050472.16	known	0.80	4.0	1	8;0	1	n	0.38	3.0	5	1;5	5	n	0.33	4.0	8	7;1	8	n	0.38	3.0	5	1;5	5	n	0.27	1.5	4	1;2	4	n	0.25	1.0	3	1;1	3	n	0.20	2.0	8	2;2	8	y	0.56	2.5	2	3;2	2	n	1.00	3.0	0	1;5	0	n	0.33	3.0	6	2;4	6	y	0.33	2.0	4	2;2	4	n	0.43	3.0	4	6;0	4	n	ENSMUSG00000041264.17	Uspl1	chr5	protein_coding	ubiquitin specific peptidase like 1
known_NIR_14605	chr5	149121616;149124644	149124518;149125155	+	149121616	149125155	cassetteExon	ENSMUST00000121416.8	known	0.04	0.5	13	1;0	13	n	0.16	2.5	13	5;0	13	n	0.11	4.0	33	8;0	33	n	0.10	2.5	22	5;0	22	n	0.08	3.0	35	4;2	35	y	0.20	1.5	6	3;0	6	n	0.11	4.0	32	8;0	32	n	0.16	1.5	8	2;1	8	n	0.04	0.5	13	0;1	13	n	0.12	3.0	22	6;0	22	n	0.12	2.0	14	4;0	14	n	0.13	2.5	17	4;1	17	n	ENSMUSG00000041264.17	Uspl1	chr5	protein_coding	ubiquitin specific peptidase like 1
known_NIR_14606	chr5	149121616;149124686	149124518;149125155	+	149121616	149125155	cassetteExon	ENSMUST00000121416.8	known	0.28	5.0	13	1;9	13	n	0.26	4.5	13	5;4	13	y	0.23	10.0	33	8;12	33	y	0.21	6.0	22	5;7	22	y	0.16	6.5	35	4;9	35	y	0.29	2.5	6	3;2	6	y	0.22	9.0	32	8;10	32	y	0.16	1.5	8	2;1	8	n	0.07	1.0	13	0;2	13	n	0.24	7.0	22	6;8	22	y	0.30	6.0	14	4;8	14	y	0.31	7.5	17	4;11	17	y	ENSMUSG00000041264.17	Uspl1	chr5	protein_coding	ubiquitin specific peptidase like 1
known_NIR_14607	chr5	149124644	149125155	+	149124686	149125155	A5SS	ENSMUST00000050472.16	known	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.18	2	9	2	9	y	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.50	1	1	1	1	n	0.33	1	2	1	2	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.08	1	11	1	11	n	ENSMUSG00000041264.17	Uspl1	chr5	protein_coding	ubiquitin specific peptidase like 1
known_NIR_14608	chr5	149125283	149130705	+	149125283	149130650	A3SS	ENSMUST00000121416.8	known	0.00	0	10	0	10	n	0.25	3	9	3	9	y	0.00	0	34	0	34	n	0.25	7	21	7	21	y	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.00	0	26	0	26	n	0.12	2	15	2	15	y	0.16	3	16	3	16	y	0.00	0	27	0	27	n	0.00	0	12	0	12	n	0.18	4	18	4	18	y	ENSMUSG00000041264.17	Uspl1	chr5	protein_coding	ubiquitin specific peptidase like 1
known_NIR_14609	chr5	149125283	149130708	+	149125283	149130650	A3SS	ENSMUST00000121416.8	known	0.00	0	10	0	10	n	0.10	1	9	1	9	n	0.06	2	34	2	34	y	0.05	1	21	1	21	n	0.06	1	17	1	17	n	0.09	1	10	1	10	n	0.00	0	26	0	26	n	0.00	0	15	0	15	n	0.00	0	16	0	16	n	0.00	0	27	0	27	n	0.00	0	12	0	12	n	0.00	0	18	0	18	n	ENSMUSG00000041264.17	Uspl1	chr5	protein_coding	ubiquitin specific peptidase like 1
known_NIR_14610	chr5	149544148	149548434	-	149544148;149547061	149546930;149548434	ES	ENSMUST00000201452.4	known	0.00	0	140.0	0	150;130	n	0.01	1	88.5	1	100;77	n	0.00	0	40.5	0	31;50	n	0.01	2	143.5	2	153;134	y	0.01	1	139.0	1	129;149	n	0.00	0	30.0	0	25;35	n	0.00	0	111.0	0	105;117	n	0.00	0	40.0	0	40;40	n	0.00	0	53.5	0	61;46	n	0.00	0	80.5	0	84;77	n	0.00	0	63.5	0	56;71	n	0.01	1	73.0	1	79;67	n	ENSMUSG00000029657.16	Hsph1	chr5	protein_coding	heat shock 105kDa/110kDa protein 1
known_NIR_14611	chr5	149544148	149548434	-	149547061	149548434	A3SS	ENSMUST00000201431.4	known	0.00	0	130	0	130	n	0.01	1	77	1	77	n	0.00	0	50	0	50	n	0.01	2	134	2	134	y	0.01	1	149	1	149	n	0.00	0	35	0	35	n	0.00	0	117	0	117	n	0.00	0	40	0	40	n	0.00	0	46	0	46	n	0.00	0	77	0	77	n	0.00	0	71	0	71	n	0.01	1	67	1	67	n	ENSMUSG00000029657.16	Hsph1	chr5	protein_coding	heat shock 105kDa/110kDa protein 1
known_NIR_14612	chr5	150500232;150500764	150500637;150517729	-	150500232	150517729	cassetteExon	ENSMUST00000016279.11	known	0.06	4.0	65	8;0	65	n	0.06	4.0	59	6;2	59	y	0.00	0.0	16	0;0	16	n	0.03	2.5	74	4;1	74	n	0.00	0.0	55	0;0	55	n	0.15	2.0	11	2;2	11	y	0.02	1.5	63	3;0	63	n	0.00	0.0	18	0;0	18	n	0.02	1.0	65	0;2	65	n	0.01	0.5	78	0;1	78	n	0.02	1.5	87	2;1	87	n	0.05	2.5	46	2;3	46	y	ENSMUSG00000041132.12	N4bp2l1	chr5	protein_coding	NEDD4 binding protein 2-like 1
known_NIR_14613	chr5	150516683	150517729	-	150500232	150517729	A3SS	ENSMUST00000016279.11	known	0.00	0	65	0	65	n	0.03	2	59	2	59	y	0.00	0	16	0	16	n	0.03	2	74	2	74	y	0.04	2	55	2	55	y	0.00	0	11	0	11	n	0.03	2	63	2	63	y	0.00	0	18	0	18	n	0.06	4	65	4	65	y	0.06	5	78	5	78	y	0.00	0	87	0	87	n	0.08	4	46	4	46	y	ENSMUSG00000041132.12	N4bp2l1	chr5	protein_coding	NEDD4 binding protein 2-like 1
known_NIR_14614	chr5	150516683	150517729	-	150516902	150517729	A3SS	ENSMUST00000200840.2	known	0.00	0	12	0	12	n	0.10	2	19	2	19	y	0.00	0	14	0	14	n	0.10	2	19	2	19	y	0.07	2	27	2	27	y	0.00	0	7	0	7	n	0.08	2	22	2	22	y	0.00	0	11	0	11	n	0.12	4	30	4	30	y	0.15	5	29	5	29	y	0.00	0	25	0	25	n	0.11	4	31	4	31	y	ENSMUSG00000041132.12	N4bp2l1	chr5	protein_coding	NEDD4 binding protein 2-like 1
known_NIR_14615	chr5	150516902	150517729	-	150500232	150517729	A3SS	ENSMUST00000016279.11	known	0.16	12	65	12	65	y	0.24	19	59	19	59	y	0.47	14	16	14	16	y	0.20	19	74	19	74	y	0.33	27	55	27	55	y	0.39	7	11	7	11	y	0.26	22	63	22	63	y	0.38	11	18	11	18	y	0.32	30	65	30	65	y	0.27	29	78	29	78	y	0.22	25	87	25	87	y	0.40	31	46	31	46	y	ENSMUSG00000041132.12	N4bp2l1	chr5	protein_coding	NEDD4 binding protein 2-like 1
known_NIR_14616	chr5	150516902	150517729	-	150500764	150517729	A3SS	ENSMUST00000202279.4	known	1.00	12	0	12	0	n	0.90	19	2	19	2	y	1.00	14	0	14	0	n	0.95	19	1	19	1	n	1.00	27	0	27	0	n	0.78	7	2	7	2	n	1.00	22	0	22	0	n	1.00	11	0	11	0	n	0.94	30	2	30	2	y	0.97	29	1	29	1	n	0.96	25	1	25	1	n	0.91	31	3	31	3	y	ENSMUSG00000041132.12	N4bp2l1	chr5	protein_coding	NEDD4 binding protein 2-like 1
known_NIR_14617	chr5	150566780	150570466	-	150566780	150574080	A5SS	ENSMUST00000156180.2	known	0.97	97	3	97	3	y	0.95	73	4	73	4	y	0.99	93	1	93	1	n	0.98	84	2	84	2	y	0.97	114	4	114	4	y	0.97	63	2	63	2	y	0.95	114	6	114	6	y	0.96	49	2	49	2	y	1.00	82	0	82	0	n	1.00	102	0	102	0	n	0.97	111	3	111	3	y	0.99	102	1	102	1	n	ENSMUSG00000029655.18	N4bp2l2	chr5	protein_coding	NEDD4 binding protein 2-like 2
known_NIR_14618	chr5	150571013	150574080	-	150566780	150574080	A3SS	ENSMUST00000156180.2	known	0.96	64	3	64	3	y	0.95	70	4	70	4	y	0.99	99	1	99	1	n	0.97	72	2	72	2	y	0.96	99	4	99	4	y	0.96	44	2	44	2	y	0.94	95	6	95	6	y	0.97	56	2	56	2	y	1.00	90	0	90	0	n	1.00	99	0	99	0	n	0.97	83	3	83	3	y	0.99	102	1	102	1	n	ENSMUSG00000029655.18	N4bp2l2	chr5	protein_coding	NEDD4 binding protein 2-like 2
known_NIR_14619	chr5	150585978	150588616	-	150585978	150588966	A5SS	ENSMUST00000118316.8	known	0.26	9	25	9	25	y	0.04	1	24	1	24	n	0.05	3	55	3	55	y	0.10	4	35	4	35	y	0.17	8	40	8	40	y	0.21	6	23	6	23	y	0.23	8	27	8	27	y	0.37	14	24	14	24	y	0.15	7	41	7	41	y	0.09	4	42	4	42	y	0.21	7	27	7	27	y	0.21	8	30	8	30	y	ENSMUSG00000029655.18	N4bp2l2	chr5	protein_coding	NEDD4 binding protein 2-like 2
known_NIR_14620	chr5	150720135	150724043	+	150720141	150724043	A5SS	ENSMUST00000202170.4	known	0.57	8	6	8	6	y	0.50	7	7	7	7	y	0.77	10	3	10	3	y	0.50	12	12	12	12	y	0.58	14	10	14	10	y	0.77	10	3	10	3	y	0.74	14	5	14	5	y	0.75	6	2	6	2	n	0.87	13	2	13	2	y	0.74	23	8	23	8	y	0.47	7	8	7	8	y	0.57	12	9	12	9	y	ENSMUSG00000034021.16	Pds5b	chr5	protein_coding	PDS5 cohesin associated factor B
known_NIR_14621	chr5	150724482	150724584	+	150724482	150724587	A3SS	ENSMUST00000202170.4	known	0.00	0	21	0	21	n	0.13	2	13	2	13	y	0.18	6	28	6	28	y	0.00	0	27	0	27	n	0.00	0	34	0	34	n	0.07	1	13	1	13	n	0.00	0	30	0	30	n	0.13	4	27	4	27	y	0.04	1	25	1	25	n	0.11	4	34	4	34	y	0.10	2	19	2	19	y	0.07	3	38	3	38	y	ENSMUSG00000034021.16	Pds5b	chr5	protein_coding	PDS5 cohesin associated factor B
known_NIR_14622	chr5	150983140	150984213	-	150983083	150984213	A3SS	ENSMUST00000110483.9	known	0.00	0	18	0	18	n	0.14	1	6	1	6	n	0.33	6	12	6	12	y	0.00	0	19	0	19	n	0.11	2	17	2	17	y	0.00	0	14	0	14	n	0.18	3	14	3	14	y	0.25	3	9	3	9	y	0.00	0	11	0	11	n	0.24	5	16	5	16	y	0.29	4	10	4	10	y	0.13	2	13	2	13	y	ENSMUSG00000016128.15	Stard13	chr5	protein_coding	StAR-related lipid transfer (START) domain containing 13
known_NIR_14623	chr5	150987121	151016212	-	150987121;150996829	150996766;151016212	ES	ENSMUST00000110483.9	known	0.00	0	11.5	0	9;14	n	0.00	0	4.5	0	4;5	n	0.09	1	10.5	1	11;10	n	0.00	0	26.5	0	26;27	n	0.00	0	20.5	0	22;19	n	0.00	0	8.0	0	10;6	n	0.07	1	12.5	1	14;11	n	0.12	2	14.0	2	15;13	y	0.00	0	14.5	0	13;16	n	0.00	0	22.5	0	25;20	n	0.08	1	11.5	1	10;13	n	0.00	0	16.5	0	15;18	n	ENSMUSG00000016128.15	Stard13	chr5	protein_coding	StAR-related lipid transfer (START) domain containing 13
known_NIR_14624	chr5	150987121	151016212	-	150996829	151016212	3pMXE	ENSMUST00000146814.5	known	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.09	1	10	1	10	n	0.00	0	27	0	27	n	0.00	0	19	0	19	n	0.00	0	6	0	6	n	0.08	1	11	1	11	n	0.13	2	13	2	13	y	0.00	0	16	0	16	n	0.00	0	20	0	20	n	0.07	1	13	1	13	n	0.00	0	18	0	18	n	ENSMUSG00000016128.15	Stard13	chr5	protein_coding	StAR-related lipid transfer (START) domain containing 13
known_NIR_14625	chr5	151018957	151157056	-	151018957	151113391	5pMXE	ENSMUST00000110483.9	known	0.14	1	6	1	6	n	0.20	2	8	2	8	y	0.21	5	19	5	19	y	0.17	2	10	2	10	y	0.12	3	21	3	21	y	0.08	1	11	1	11	n	0.15	2	11	2	11	y	0.23	3	10	3	10	y	0.00	0	11	0	11	n	0.21	3	11	3	11	y	0.00	0	3	0	3	n	0.00	0	8	0	8	n	ENSMUSG00000016128.15	Stard13	chr5	protein_coding	StAR-related lipid transfer (START) domain containing 13
known_NIR_14626	chr5	151330082	151331340	+	151303988	151331340	A5SS	ENSMUST00000202024.4	known	1.00	10	0	10	0	n	1.00	11	0	11	0	n	-	-	-	-	-	-	1.00	13	0	13	0	n	1.00	12	0	12	0	n	-	-	-	-	-	-	1.00	8	0	8	0	n	0.80	8	2	8	2	y	1.00	15	0	15	0	n	1.00	24	0	24	0	n	1.00	12	0	12	0	n	1.00	10	0	10	0	n	ENSMUSG00000097321.6	1700028E10Rik	chr5	lncRNA	RIKEN cDNA 1700028E10 gene
known_NIR_14627	chr5	151330082;151331532	151331340;151351553	+	151330082;151348046	151347978;151351553	MXE	ENSMUST00000201142.4	known	0.53	5.0	4.5	10;0	5;4	n	0.73	5.5	2.0	11;0	2;2	n	-	-	-	-	-	-	0.56	7.5	6.0	13;2	4;8	y	0.67	7.0	3.5	12;2	7;0	n	0.00	0.0	0.5	0;0	0;1	n	0.62	5.0	3.0	8;2	3;3	y	0.90	4.5	0.5	8;1	0;1	n	0.75	7.5	2.5	15;0	1;4	n	0.59	13.0	9.0	24;2	7;11	y	0.55	6.0	5.0	12;0	4;6	n	0.61	7.0	4.5	10;4	2;7	y	ENSMUSG00000097321.6	1700028E10Rik	chr5	lncRNA	RIKEN cDNA 1700028E10 gene
known_NIR_14628	chr5	151331532	151351553	+	151331532	151337092	3pMXE	ENSMUST00000202024.4	known	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.00	0	2	0	2	n	0.25	2	6	2	6	n	0.29	2	5	2	5	n	0.00	0	3	0	3	n	0.11	2	16	2	16	y	0.11	1	8	1	8	n	0.00	0	13	0	13	n	0.12	2	14	2	14	y	0.00	0	13	0	13	n	0.44	4	5	4	5	n	ENSMUSG00000097321.6	1700028E10Rik	chr5	lncRNA	RIKEN cDNA 1700028E10 gene
known_NIR_14629	chr5	16230863	16293146	+	16230863	16367991	A3SS	ENSMUST00000167946.9	known	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	n	-	-	-	-	-	-	0.17	2	10	2	10	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	3	0	3	0	n	ENSMUSG00000040118.16	Cacna2d1	chr5	protein_coding	calcium channel, voltage-dependent, alpha2/delta subunit 1
known_NIR_14630	chr5	16771859	16777505	+	16771859	16777490	A3SS	ENSMUST00000195957.5	known	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.48	13	14	13	14	y	0.75	3	1	3	1	n	0.25	2	6	2	6	n	0.22	2	7	2	7	n	0.00	0	4	0	4	n	0.33	2	4	2	4	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.50	2	2	2	2	n	ENSMUSG00000028864.8	Hgf	chr5	protein_coding	hepatocyte growth factor
known_NIR_14631	chr5	18033979	18034454	-	18033982	18034454	A3SS	ENSMUST00000170051.8	known	0.40	8	12	8	12	y	0.19	5	22	5	22	y	0.14	29	171	29	171	y	0.18	9	42	9	42	y	0.20	10	41	10	41	y	0.10	8	75	8	75	y	0.17	48	236	48	236	y	0.27	18	48	18	48	y	0.18	4	18	4	18	y	0.18	12	54	12	54	y	0.23	6	20	6	20	y	0.18	7	32	7	32	y	ENSMUSG00000002944.16	Cd36	chr5	protein_coding	CD36 molecule
known_NIR_14632	chr5	18034547	18054655	-	18034547	18040616	5pMXE	ENSMUST00000082367.13	known	0.38	11	18	11	18	y	0.29	5	12	5	12	y	0.59	79	56	79	56	y	0.32	10	21	10	21	y	0.28	16	41	16	41	y	0.38	23	38	23	38	y	0.27	61	164	61	164	y	0.57	28	21	28	21	y	0.24	5	16	5	16	y	0.38	17	28	17	28	y	0.26	6	17	6	17	y	0.27	12	32	12	32	y	ENSMUSG00000002944.16	Cd36	chr5	protein_coding	CD36 molecule
known_NIR_14633	chr5	18034547	18093709	-	18034547	18040616	5pMXE	ENSMUST00000082367.13	known	0.10	2	18	2	18	y	0.00	0	12	0	12	n	0.00	0	56	0	56	n	0.00	0	21	0	21	n	0.02	1	41	1	41	n	0.00	0	38	0	38	n	0.05	8	164	8	164	y	0.00	0	21	0	21	n	0.00	0	16	0	16	n	0.00	0	28	0	28	n	0.00	0	17	0	17	n	0.00	0	32	0	32	n	ENSMUSG00000002944.16	Cd36	chr5	protein_coding	CD36 molecule
known_NIR_14634	chr5	18034547	18093709	-	18034547	18054655	5pMXE	ENSMUST00000170051.8	known	0.15	2	11	2	11	y	0.00	0	5	0	5	n	0.00	0	79	0	79	n	0.00	0	10	0	10	n	0.06	1	16	1	16	n	0.00	0	23	0	23	n	0.12	8	61	8	61	y	0.00	0	28	0	28	n	0.00	0	5	0	5	n	0.00	0	17	0	17	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	ENSMUSG00000002944.16	Cd36	chr5	protein_coding	CD36 molecule
known_NIR_14635	chr5	18034547	18093709	-	18034547;18040669	18040616;18093709	ES	ENSMUST00000169095.6	known	0.18	2	9.0	2	18;0	n	0.00	0	7.0	0	12;2	n	0.00	0	28.0	0	56;0	n	0.00	0	10.5	0	21;0	n	0.05	1	20.5	1	41;0	n	0.00	0	19.0	0	38;0	n	0.08	8	94.5	8	164;25	y	0.00	0	10.5	0	21;0	n	0.00	0	8.0	0	16;0	n	0.00	0	14.0	0	28;0	n	0.00	0	8.5	0	17;0	n	0.00	0	16.0	0	32;0	n	ENSMUSG00000002944.16	Cd36	chr5	protein_coding	CD36 molecule
known_NIR_14636	chr5	18034547;18040669	18040616;18054655	-	18034547	18054655	cassetteExon	ENSMUST00000170051.8	known	0.57	14.5	11	18;11	11	y	0.66	9.5	5	12;7	5	y	0.39	49.5	79	56;43	79	y	0.65	18.5	10	21;16	10	y	0.66	31.0	16	41;21	16	y	0.58	31.5	23	38;25	23	y	0.68	127.0	61	164;90	61	y	0.46	23.5	28	21;26	28	y	0.70	11.5	5	16;7	5	y	0.63	29.5	17	28;31	17	y	0.70	14.0	6	17;11	6	y	0.65	22.5	12	32;13	12	y	ENSMUSG00000002944.16	Cd36	chr5	protein_coding	CD36 molecule
known_NIR_14637	chr5	18040669	18054655	-	18040669	18093709	A5SS	ENSMUST00000169095.6	known	1.00	11	0	11	0	n	0.78	7	2	7	2	n	1.00	43	0	43	0	n	1.00	16	0	16	0	n	1.00	21	0	21	0	n	1.00	25	0	25	0	n	0.78	90	25	90	25	y	1.00	26	0	26	0	n	1.00	7	0	7	0	n	1.00	31	0	31	0	n	1.00	11	0	11	0	n	1.00	13	0	13	0	n	ENSMUSG00000002944.16	Cd36	chr5	protein_coding	CD36 molecule
known_NIR_14638	chr5	20987445	20994627	-	20987489	20994627	A3SS	ENSMUST00000118174.8	known	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.08	1	12	1	12	n	0.00	0	14	0	14	n	0.33	6	12	6	12	y	0.00	0	1	0	1	n	0.00	0	17	0	17	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.29	2	5	2	5	n	0.14	2	12	2	12	y	ENSMUSG00000039987.16	Phtf2	chr5	protein_coding	putative homeodomain transcription factor 2
known_NIR_14639	chr5	21007064	21010653	-	21007064;21008348	21008183;21010653	ES	ENSMUST00000118174.8	known	0.00	0	3.5	0	5;2	n	0.25	1	3.0	1	3;3	n	0.00	0	9.5	0	9;10	n	0.00	0	6.0	0	5;7	n	0.22	3	10.5	3	11;10	y	0.00	0	3.0	0	3;3	n	0.07	1	13.5	1	13;14	n	0.00	0	7.0	0	9;5	n	0.00	0	5.0	0	6;4	n	0.00	0	6.5	0	7;6	n	0.36	2	3.5	2	5;2	n	0.00	0	10.0	0	13;7	n	ENSMUSG00000039987.16	Phtf2	chr5	protein_coding	putative homeodomain transcription factor 2
known_NIR_14640	chr5	21214561	21216683	-	21214582	21216683	A3SS	ENSMUST00000030556.8	known	0.00	0	21	0	21	n	0.00	0	19	0	19	n	0.03	2	72	2	72	y	0.00	0	37	0	37	n	0.00	0	54	0	54	n	0.00	0	32	0	32	n	0.00	0	35	0	35	n	0.00	0	37	0	37	n	0.00	0	24	0	24	n	0.00	0	43	0	43	n	0.00	0	24	0	24	n	0.00	0	50	0	50	n	ENSMUSG00000028771.14	Ptpn12	chr5	protein_coding	protein tyrosine phosphatase, non-receptor type 12
known_NIR_14641	chr5	21227092	21260647	-	21227092;21234882	21234774;21260647	ES	ENSMUST00000030556.8	known	0.26	6	17.0	6	15;19	y	0.22	4	14.5	4	17;12	y	0.21	17	64.0	17	67;61	y	0.37	14	24.0	14	20;28	y	0.29	13	32.5	13	31;34	y	0.30	12	28.5	12	34;23	y	0.26	15	42.5	15	38;47	y	0.41	16	23.5	16	28;19	y	0.27	10	26.5	10	23;30	y	0.30	20	46.0	20	46;46	y	0.32	5	10.5	5	13;8	y	0.29	10	25.0	10	30;20	y	ENSMUSG00000028771.14	Ptpn12	chr5	protein_coding	protein tyrosine phosphatase, non-receptor type 12
known_NIR_14642	chr5	21426293	21427388	+	21426293	21433022	A3SS	ENSMUST00000198071.5	known	1.00	41	0	41	0	n	1.00	43	0	43	0	n	0.96	68	3	68	3	y	1.00	65	0	65	0	n	1.00	80	0	80	0	n	1.00	32	0	32	0	n	1.00	75	0	75	0	n	1.00	46	0	46	0	n	1.00	69	0	69	0	n	0.99	74	1	74	1	n	1.00	68	0	68	0	n	1.00	110	0	110	0	n	ENSMUSG00000039934.13	Gsap	chr5	protein_coding	gamma-secretase activating protein
known_NIR_14643	chr5	21426293	21431242	+	21426293;21427437	21427388;21431242	ES	ENSMUST00000197522.5	known	0.00	0	47.5	0	41;54	n	0.00	0	39.5	0	43;36	n	0.00	0	63.0	0	68;58	n	0.00	0	59.0	0	65;53	n	0.04	3	80.0	3	80;80	y	0.00	0	29.5	0	32;27	n	0.00	0	69.5	0	75;64	n	0.00	0	43.5	0	46;41	n	0.01	1	67.0	1	69;65	n	0.01	1	70.5	1	74;67	n	0.00	0	65.5	0	68;63	n	0.00	0	101.5	0	110;93	n	ENSMUSG00000039934.13	Gsap	chr5	protein_coding	gamma-secretase activating protein
known_NIR_14644	chr5	21431831	21433022	+	21426293	21433022	A5SS	ENSMUST00000198071.5	known	1.00	61	0	61	0	n	1.00	37	0	37	0	n	0.94	50	3	50	3	y	1.00	48	0	48	0	n	1.00	64	0	64	0	n	1.00	35	0	35	0	n	1.00	48	0	48	0	n	1.00	36	0	36	0	n	1.00	58	0	58	0	n	0.99	96	1	96	1	n	1.00	64	0	64	0	n	1.00	74	0	74	0	n	ENSMUSG00000039934.13	Gsap	chr5	protein_coding	gamma-secretase activating protein
known_NIR_14645	chr5	21478041	21483043	+	21478041	21492675	A3SS	ENSMUST00000198014.5	known	0.92	22	2	22	2	y	1.00	9	0	9	0	n	0.95	18	1	18	1	n	1.00	22	0	22	0	n	1.00	51	0	51	0	n	1.00	23	0	23	0	n	0.95	18	1	18	1	n	1.00	7	0	7	0	n	1.00	27	0	27	0	n	0.98	45	1	45	1	n	1.00	30	0	30	0	n	0.97	31	1	31	1	n	ENSMUSG00000039934.13	Gsap	chr5	protein_coding	gamma-secretase activating protein
known_NIR_14646	chr5	21486600	21492675	+	21478041	21492675	A5SS	ENSMUST00000198014.5	known	0.90	19	2	19	2	y	1.00	16	0	16	0	n	0.94	17	1	17	1	n	1.00	26	0	26	0	n	1.00	29	0	29	0	n	1.00	14	0	14	0	n	0.96	23	1	23	1	n	1.00	21	0	21	0	n	1.00	28	0	28	0	n	0.97	35	1	35	1	n	1.00	24	0	24	0	n	0.98	53	1	53	1	n	ENSMUSG00000039934.13	Gsap	chr5	protein_coding	gamma-secretase activating protein
known_NIR_14647	chr5	21851233	21853618	+	21851233	21853660	A3SS	ENSMUST00000148873.8	known	1.00	8	0	8	0	n	1.00	9	0	9	0	n	0.94	16	1	16	1	n	1.00	13	0	13	0	n	1.00	9	0	9	0	n	1.00	3	0	3	0	n	1.00	31	0	31	0	n	1.00	10	0	10	0	n	1.00	13	0	13	0	n	0.80	8	2	8	2	y	1.00	18	0	18	0	n	1.00	16	0	16	0	n	ENSMUSG00000038525.17	Armc10	chr5	protein_coding	armadillo repeat containing 10
known_NIR_14648	chr5	21961673	21961796	+	21961673	21961813	A3SS	ENSMUST00000030882.12	known	0.01	2	366	2	366	y	0.01	5	431	5	431	y	0.03	10	283	10	283	y	0.01	4	390	4	390	y	0.02	6	382	6	382	y	0.02	4	189	4	189	y	0.02	9	476	9	476	y	0.03	4	149	4	149	y	0.02	9	368	9	368	y	0.03	18	594	18	594	y	0.01	4	484	4	484	y	0.00	2	477	2	477	y	ENSMUSG00000029017.14	Pmpcb	chr5	protein_coding	peptidase (mitochondrial processing) beta
known_NIR_14649	chr5	21988146	21989987	-	21988235	21989987	A3SS	ENSMUST00000030771.12	known	0.00	0	34	0	34	n	0.03	1	30	1	30	n	0.08	4	48	4	48	y	0.06	2	30	2	30	y	0.14	7	43	7	43	y	0.00	0	23	0	23	n	0.00	0	53	0	53	n	0.17	4	19	4	19	y	0.06	2	30	2	30	y	0.00	0	41	0	41	n	0.07	3	40	3	40	y	0.04	2	43	2	43	y	ENSMUSG00000029014.15	Dnajc2	chr5	protein_coding	DnaJ heat shock protein family (Hsp40) member C2
known_NIR_14650	chr5	22751502	22752922	-	22751596	22752922	A3SS	ENSMUST00000135906.8	known	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.00	0	19	0	19	n	0.05	1	20	1	20	n	0.00	0	18	0	18	n	0.00	0	11	0	11	n	0.00	0	17	0	17	n	0.13	2	13	2	13	y	0.00	0	18	0	18	n	0.11	3	24	3	24	y	0.00	0	19	0	19	n	0.00	0	23	0	23	n	ENSMUSG00000029012.12	Orc5	chr5	protein_coding	origin recognition complex, subunit 5
known_NIR_14651	chr5	23639781;23651596	23651524;23655150	+	23639781	23655150	cassetteExon	ENSMUST00000196889.5	known	0.12	1.0	7	0;2	7	n	0.23	1.5	5	1;2	5	n	0.12	4.0	29	3;5	29	y	0.12	2.0	14	2;2	14	y	0.27	7.0	19	10;4	19	y	0.32	6.0	13	6;6	13	y	0.26	2.5	7	2;3	7	y	0.15	2.0	11	2;2	11	y	0.14	1.5	9	3;0	9	n	0.07	1.5	20	2;1	20	n	0.28	3.5	9	5;2	9	y	0.14	2.0	12	1;3	12	n	ENSMUSG00000029004.16	Kmt2e	chr5	protein_coding	lysine (K)-specific methyltransferase 2E
known_NIR_14652	chr5	23703292;23704000	23703886;23704280	+	23703292	23704280	cassetteExon	ENSMUST00000094962.9	known	0.29	6.0	15	7;5	15	y	0.10	2.5	23	2;3	23	y	0.08	4.0	46	3;5	46	y	0.14	5.0	32	5;5	32	y	0.10	3.5	33	3;4	33	y	0.02	0.5	31	1;0	31	n	0.05	2.0	39	0;4	39	n	0.16	4.5	23	5;4	23	y	0.20	3.5	14	4;3	14	y	0.11	4.0	34	5;3	34	y	0.11	3.0	24	3;3	24	y	0.11	4.5	38	4;5	38	y	ENSMUSG00000029004.16	Kmt2e	chr5	protein_coding	lysine (K)-specific methyltransferase 2E
known_NIR_14653	chr5	23952918	23953754	-	23952918	23953681	A5SS	ENSMUST00000119946.8	known	0.06	1	17	1	17	n	0.09	2	20	2	20	y	0.00	0	12	0	12	n	0.00	0	24	0	24	n	0.07	2	25	2	25	y	0.00	0	2	0	2	n	0.10	2	18	2	18	y	0.50	6	6	6	6	y	0.12	2	14	2	14	y	0.03	1	36	1	36	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	ENSMUSG00000057541.15	Pus7	chr5	protein_coding	pseudouridylate synthase 7
known_NIR_14654	chr5	23953920	23954803	-	23953841	23954803	A3SS	ENSMUST00000119946.8	known	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	17	0	17	n	0.00	0	26	0	26	n	0.12	1	7	1	7	n	0.06	1	15	1	15	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.18	3	14	3	14	y	0.00	0	18	0	18	n	ENSMUSG00000057541.15	Pus7	chr5	protein_coding	pseudouridylate synthase 7
known_NIR_14655	chr5	23954864	23954997	-	23954864	23957260	A5SS	ENSMUST00000119946.8	known	0.08	1	12	1	12	n	0.06	1	16	1	16	n	0.00	0	10	0	10	n	0.06	1	17	1	17	n	0.19	5	22	5	22	y	0.00	0	12	0	12	n	0.08	1	12	1	12	n	0.22	2	7	2	7	n	0.22	2	7	2	7	n	0.09	2	20	2	20	y	0.12	2	15	2	15	y	0.00	0	20	0	20	n	ENSMUSG00000057541.15	Pus7	chr5	protein_coding	pseudouridylate synthase 7
known_NIR_14656	chr5	23956397	23957260	-	23954864	23957260	A3SS	ENSMUST00000119946.8	known	0.00	0	12	0	12	n	0.27	6	16	6	16	y	0.00	0	10	0	10	n	0.06	1	17	1	17	n	0.12	3	22	3	22	y	0.00	0	12	0	12	n	0.14	2	12	2	12	y	0.00	0	7	0	7	n	0.12	1	7	1	7	n	0.05	1	20	1	20	n	0.00	0	15	0	15	n	0.00	0	20	0	20	n	ENSMUSG00000057541.15	Pus7	chr5	protein_coding	pseudouridylate synthase 7
known_NIR_14657	chr5	23993333	23998556	+	23993333	23999301	A3SS	ENSMUST00000030852.13	known	0.05	1	19	1	19	n	0.28	9	23	9	23	y	0.03	2	58	2	58	y	0.15	5	29	5	29	y	0.07	3	39	3	39	y	0.00	0	25	0	25	n	0.11	2	16	2	16	y	0.07	2	28	2	28	y	0.17	2	10	2	10	y	0.08	2	24	2	24	y	0.06	1	17	1	17	n	0.21	4	15	4	15	y	ENSMUSG00000028999.16	Rint1	chr5	protein_coding	RAD50 interactor 1
known_NIR_14658	chr5	23999485	24000668	+	23999485	24005593	A3SS	ENSMUST00000030852.13	known	0.10	2	19	2	19	y	0.06	1	16	1	16	n	0.04	2	46	2	46	y	0.00	0	27	0	27	n	0.00	0	42	0	42	n	0.00	0	32	0	32	n	0.05	1	20	1	20	n	0.00	0	34	0	34	n	0.00	0	23	0	23	n	0.00	0	30	0	30	n	0.00	0	17	0	17	n	0.00	0	19	0	19	n	ENSMUSG00000028999.16	Rint1	chr5	protein_coding	RAD50 interactor 1
known_NIR_14659	chr5	24005834	24010569	+	24005834;24010481	24010308;24010569	ES	ENSMUST00000030852.13	known	0.00	0	24.0	0	24;24	n	0.00	0	17.5	0	20;15	n	0.00	0	59.5	0	73;46	n	0.00	0	28.0	0	28;28	n	0.00	0	44.5	0	41;48	n	0.00	0	42.5	0	40;45	n	0.00	0	31.5	0	39;24	n	0.05	2	36.0	2	24;48	y	0.04	1	22.5	1	28;17	n	0.00	0	27.5	0	29;26	n	0.00	0	24.5	0	29;20	n	0.00	0	31.5	0	35;28	n	ENSMUSG00000028999.16	Rint1	chr5	protein_coding	RAD50 interactor 1
known_NIR_14660	chr5	24016840	24020650	+	24016907	24020650	A5SS	ENSMUST00000030852.13	known	0.06	4	58	4	58	y	0.00	0	58	0	58	n	0.01	1	123	1	123	n	0.00	0	52	0	52	n	0.01	1	83	1	83	n	0.00	0	80	0	80	n	0.00	0	51	0	51	n	0.00	0	62	0	62	n	0.00	0	37	0	37	n	0.00	0	53	0	53	n	0.00	0	54	0	54	n	0.00	0	42	0	42	n	ENSMUSG00000028999.16	Rint1	chr5	protein_coding	RAD50 interactor 1
known_NIR_14661	chr5	24170356;24171429	24171132;24184486	-	24170356	24184486	cassetteExon	ENSMUST00000030849.13	known	1.00	2.5	0	4;1	0	n	0.33	0.5	1	1;0	1	n	1.00	3.5	0	4;3	0	n	0.69	4.5	2	6;3	2	y	1.00	10.5	0	10;11	0	n	0.56	2.5	2	3;2	2	n	0.40	2.0	3	1;3	3	n	0.50	3.0	3	5;1	3	n	1.00	2.0	0	3;1	0	n	0.45	2.5	3	4;1	3	n	0.65	5.5	3	9;2	3	y	1.00	6.5	0	10;3	0	n	ENSMUSG00000028995.15	Fam126a	chr5	protein_coding	family with sequence similarity 126, member A
known_NIR_14662	chr5	24374388	24382998	+	24374388;24380528	24380452;24382998	ES	ENSMUST00000049887.13	known	0.00	0	11.5	0	8;15	n	0.33	3	6.0	3	7;5	y	0.00	0	10.0	0	12;8	n	0.00	0	4.5	0	4;5	n	0.00	0	8.5	0	7;10	n	0.00	0	5.5	0	5;6	n	0.00	0	6.5	0	7;6	n	0.00	0	8.0	0	4;12	n	0.00	0	4.0	0	5;3	n	0.00	0	8.0	0	7;9	n	0.00	0	6.5	0	7;6	n	0.00	0	6.5	0	5;8	n	ENSMUSG00000048439.16	Nupl2	chr5	protein_coding	nucleoporin like 2
known_NIR_14663	chr5	24625803	24627330	-	24625803;24626048	24625953;24627330	ES	ENSMUST00000030814.11	known	0.00	0	88.0	0	67;109	n	0.02	2	84.5	2	82;87	y	0.01	1	77.5	1	69;86	n	0.01	1	85.5	1	77;94	n	0.00	0	123.5	0	109;138	n	0.00	0	48.0	0	55;41	n	0.00	0	114.5	0	101;128	n	0.02	1	46.5	1	47;46	n	0.00	0	66.5	0	55;78	n	0.00	0	95.5	0	79;112	n	0.00	0	88.0	0	87;89	n	0.00	0	104.0	0	88;120	n	ENSMUSG00000028969.11	Cdk5	chr5	protein_coding	cyclin-dependent kinase 5
known_NIR_14664	chr5	24625803	24627330	-	24626048	24627330	3pMXE	ENSMUST00000197619.2	known	0.00	0	109	0	109	n	0.02	2	87	2	87	y	0.01	1	86	1	86	n	0.01	1	94	1	94	n	0.00	0	138	0	138	n	0.00	0	41	0	41	n	0.00	0	128	0	128	n	0.02	1	46	1	46	n	0.00	0	78	0	78	n	0.00	0	112	0	112	n	0.00	0	89	0	89	n	0.00	0	120	0	120	n	ENSMUSG00000028969.11	Cdk5	chr5	protein_coding	cyclin-dependent kinase 5
known_NIR_14665	chr5	24629366	24632521	+	24629149	24632521	A5SS	ENSMUST00000153274.2	known	1.00	9	0	9	0	n	1.00	6	0	6	0	n	1.00	16	0	16	0	n	0.92	12	1	12	1	n	1.00	12	0	12	0	n	1.00	12	0	12	0	n	1.00	6	0	6	0	n	0.88	7	1	7	1	n	1.00	3	0	3	0	n	0.82	9	2	9	2	y	1.00	13	0	13	0	n	0.80	8	2	8	2	y	ENSMUSG00000028962.15	Slc4a2	chr5	protein_coding	solute carrier family 4 (anion exchanger), member 2
known_NIR_14666	chr5	24630433	24632521	+	24629149	24632521	A5SS	ENSMUST00000153274.2	known	1.00	6	0	6	0	n	1.00	3	0	3	0	n	1.00	7	0	7	0	n	0.92	11	1	11	1	n	1.00	5	0	5	0	n	1.00	6	0	6	0	n	1.00	12	0	12	0	n	0.89	8	1	8	1	n	1.00	5	0	5	0	n	0.82	9	2	9	2	y	1.00	3	0	3	0	n	0.83	10	2	10	2	y	ENSMUSG00000028962.15	Slc4a2	chr5	protein_coding	solute carrier family 4 (anion exchanger), member 2
known_NIR_14667	chr5	24630433	24632521	+	24629366	24632521	A5SS	ENSMUST00000141966.8	known	0.40	6	9	6	9	y	0.33	3	6	3	6	n	0.30	7	16	7	16	y	0.48	11	12	11	12	y	0.29	5	12	5	12	y	0.33	6	12	6	12	y	0.67	12	6	12	6	y	0.53	8	7	8	7	y	0.62	5	3	5	3	n	0.50	9	9	9	9	y	0.19	3	13	3	13	y	0.56	10	8	10	8	y	ENSMUSG00000028962.15	Slc4a2	chr5	protein_coding	solute carrier family 4 (anion exchanger), member 2
known_NIR_14668	chr5	24633271	24634414	+	24632634	24634414	A5SS	ENSMUST00000141966.8	known	0.27	4	11	4	11	y	0.25	2	6	2	6	n	0.03	1	33	1	33	n	0.25	10	30	10	30	y	0.21	9	34	9	34	y	0.00	0	14	0	14	n	0.10	3	26	3	26	y	0.10	2	18	2	18	y	0.39	7	11	7	11	y	0.37	10	17	10	17	y	0.17	4	19	4	19	y	0.25	5	15	5	15	y	ENSMUSG00000028962.15	Slc4a2	chr5	protein_coding	solute carrier family 4 (anion exchanger), member 2
known_NIR_14669	chr5	24633317	24634414	+	24632634	24634414	A5SS	ENSMUST00000141966.8	known	0.15	2	11	2	11	y	0.00	0	6	0	6	n	0.00	0	33	0	33	n	0.00	0	30	0	30	n	0.00	0	34	0	34	n	0.07	1	14	1	14	n	0.00	0	26	0	26	n	0.00	0	18	0	18	n	0.08	1	11	1	11	n	0.00	0	17	0	17	n	0.00	0	19	0	19	n	0.00	0	15	0	15	n	ENSMUSG00000028962.15	Slc4a2	chr5	protein_coding	solute carrier family 4 (anion exchanger), member 2
known_NIR_14670	chr5	24646259	24646334	-	24644916	24646334	A3SS	ENSMUST00000115043.8	known	0.98	117	2	117	2	y	1.00	80	0	80	0	n	1.00	120	0	120	0	n	1.00	85	0	85	0	n	1.00	104	0	104	0	n	1.00	81	0	81	0	n	1.00	117	0	117	0	n	1.00	52	0	52	0	n	1.00	67	0	67	0	n	0.99	116	1	116	1	n	1.00	96	0	96	0	n	1.00	94	0	94	0	n	ENSMUSG00000028959.15	Fastk	chr5	protein_coding	Fas-activated serine/threonine kinase
known_NIR_14671	chr5	24646259	24646730	-	24646259	24646334	A5SS&ES	ENSMUST00000132109.8	known	0.00	0	117	0	117	n	0.00	0	80	0	80	n	0.00	0	120	0	120	n	0.00	0	85	0	85	n	0.00	0	104	0	104	n	0.00	0	81	0	81	n	0.00	0	117	0	117	n	0.00	0	52	0	52	n	0.00	0	67	0	67	n	0.02	2	116	2	116	y	0.00	0	96	0	96	n	0.00	0	94	0	94	n	ENSMUSG00000028959.15	Fastk	chr5	protein_coding	Fas-activated serine/threonine kinase
known_NIR_14672	chr5	24646259	24646730	-	24646661	24646730	A3SS&ES	ENSMUST00000115043.8	known	0.00	0	59	0	59	n	0.00	0	114	0	114	n	0.00	0	120	0	120	n	0.00	0	69	0	69	n	0.00	0	103	0	103	n	0.00	0	65	0	65	n	0.00	0	112	0	112	n	0.00	0	47	0	47	n	0.00	0	57	0	57	n	0.02	2	120	2	120	y	0.00	0	98	0	98	n	0.00	0	99	0	99	n	ENSMUSG00000028959.15	Fastk	chr5	protein_coding	Fas-activated serine/threonine kinase
known_NIR_14673	chr5	24646259;24646661	24646334;24646730	-	24646259	24646730	cassetteExon	ENSMUST00000144389.8	known	1.00	88.0	0	117;59	0	n	1.00	97.0	0	80;114	0	n	1.00	120.0	0	120;120	0	n	1.00	77.0	0	85;69	0	n	1.00	103.5	0	104;103	0	n	1.00	73.0	0	81;65	0	n	1.00	114.5	0	117;112	0	n	1.00	49.5	0	52;47	0	n	1.00	62.0	0	67;57	0	n	0.98	118.0	2	116;120	2	y	1.00	97.0	0	96;98	0	n	1.00	96.5	0	94;99	0	n	ENSMUSG00000028959.15	Fastk	chr5	protein_coding	Fas-activated serine/threonine kinase
known_NIR_14674	chr5	24647098	24647180	-	24647081	24647180	A3SS	ENSMUST00000115043.8	known	0.20	23	94	23	94	y	0.21	23	86	23	86	y	0.13	21	146	21	146	y	0.13	12	81	12	81	y	0.21	25	92	25	92	y	0.11	10	78	10	78	y	0.07	9	116	9	116	y	0.15	8	44	8	44	y	0.09	5	52	5	52	y	0.16	16	81	16	81	y	0.14	15	92	15	92	y	0.11	11	91	11	91	y	ENSMUSG00000028959.15	Fastk	chr5	protein_coding	Fas-activated serine/threonine kinase
known_NIR_14675	chr5	24648141	24648893	-	24648141;24648454	24648275;24648893	ES	ENSMUST00000115043.8	known	0.02	2	88.0	2	113;63	y	0.00	0	81.0	0	91;71	n	0.00	0	134.0	0	138;130	n	0.00	0	91.0	0	103;79	n	0.01	1	111.0	1	126;96	n	0.00	0	69.0	0	71;67	n	0.00	0	108.0	0	130;86	n	0.00	0	76.5	0	79;74	n	0.00	0	79.0	0	101;57	n	0.00	0	114.5	0	156;73	n	0.00	0	88.0	0	106;70	n	0.00	0	95.5	0	111;80	n	ENSMUSG00000028959.15	Fastk	chr5	protein_coding	Fas-activated serine/threonine kinase
known_NIR_14676	chr5	24648141	24648893	-	24648454	24648893	3pMXE	ENSMUST00000123144.2	known	0.03	2	63	2	63	y	0.00	0	71	0	71	n	0.00	0	130	0	130	n	0.00	0	79	0	79	n	0.01	1	96	1	96	n	0.00	0	67	0	67	n	0.00	0	86	0	86	n	0.00	0	74	0	74	n	0.00	0	57	0	57	n	0.00	0	73	0	73	n	0.00	0	70	0	70	n	0.00	0	80	0	80	n	ENSMUSG00000028959.15	Fastk	chr5	protein_coding	Fas-activated serine/threonine kinase
known_NIR_14677	chr5	24649256	24649373	-	24649124	24649373	A3SS	ENSMUST00000131946.8	known	0.50	1	1	1	1	n	1.00	7	0	7	0	n	1.00	14	0	14	0	n	1.00	4	0	4	0	n	0.31	4	9	4	9	y	1.00	3	0	3	0	n	1.00	2	0	2	0	n	1.00	5	0	5	0	n	1.00	1	0	1	0	n	0.60	6	4	6	4	y	1.00	6	0	6	0	n	0.50	2	2	2	2	n	ENSMUSG00000028959.15	Fastk	chr5	protein_coding	Fas-activated serine/threonine kinase
known_NIR_14678	chr5	24649393	24650064	-	24649303	24650064	A3SS	ENSMUST00000115043.8	known	0.09	5	52	5	52	y	0.24	9	28	9	28	y	0.12	11	81	11	81	y	0.14	6	36	6	36	y	0.08	6	65	6	65	y	0.13	7	48	7	48	y	0.06	5	73	5	73	y	0.10	5	44	5	44	y	0.04	2	48	2	48	y	0.05	4	78	4	78	y	0.14	6	37	6	37	y	0.18	8	36	8	36	y	ENSMUSG00000028959.15	Fastk	chr5	protein_coding	Fas-activated serine/threonine kinase
known_NIR_14679	chr5	24651950	24652253	-	24651950	24652755	A5SS	ENSMUST00000030799.15	known	0.60	3	2	3	2	n	0.00	0	7	0	7	n	0.14	1	6	1	6	n	0.36	5	9	5	9	y	0.08	1	11	1	11	n	0.00	0	11	0	11	n	0.37	7	12	7	12	y	0.07	1	14	1	14	n	0.55	6	5	6	5	y	0.10	1	9	1	9	n	0.20	1	4	1	4	n	0.33	2	4	2	4	n	ENSMUSG00000028958.16	Tmub1	chr5	protein_coding	transmembrane and ubiquitin-like domain containing 1
known_NIR_14680	chr5	24651950	24652455	-	24651950	24652755	A5SS	ENSMUST00000030799.15	known	0.50	2	2	2	2	n	0.12	1	7	1	7	n	0.00	0	6	0	6	n	0.18	2	9	2	9	y	0.27	4	11	4	11	y	0.00	0	11	0	11	n	0.08	1	12	1	12	n	0.22	4	14	4	14	y	0.38	3	5	3	5	n	0.18	2	9	2	9	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	ENSMUSG00000028958.16	Tmub1	chr5	protein_coding	transmembrane and ubiquitin-like domain containing 1
known_NIR_14681	chr5	24684787	24685121	+	24684787	24688339	A3SS	ENSMUST00000024123.9	known	0.00	0	50	0	50	n	0.00	0	38	0	38	n	0.00	0	35	0	35	n	0.00	0	23	0	23	n	0.00	0	40	0	40	n	0.09	2	20	2	20	y	0.02	1	53	1	53	n	0.00	0	29	0	29	n	0.00	0	21	0	21	n	0.00	0	41	0	41	n	0.05	2	39	2	39	y	0.02	1	42	1	42	n	ENSMUSG00000023353.15	Agap3	chr5	protein_coding	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3
known_NIR_14682	chr5	24684787	24687264	+	24684787	24688339	A3SS	ENSMUST00000024123.9	known	0.09	5	50	5	50	y	0.07	3	38	3	38	y	0.15	6	35	6	35	y	0.04	1	23	1	23	n	0.09	4	40	4	40	y	0.09	2	20	2	20	y	0.09	5	53	5	53	y	0.03	1	29	1	29	n	0.12	3	21	3	21	y	0.15	7	41	7	41	y	0.15	7	39	7	39	y	0.12	6	42	6	42	y	ENSMUSG00000023353.15	Agap3	chr5	protein_coding	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3
known_NIR_14683	chr5	24698124	24701731	+	24698124	24704656	A3SS	ENSMUST00000197513.2	known	0.33	11	22	11	22	y	0.12	6	42	6	42	y	0.02	1	40	1	40	n	0.18	9	40	9	40	y	0.09	6	60	6	60	y	0.25	4	12	4	12	y	0.22	16	57	16	57	y	0.08	2	22	2	22	y	0.15	5	29	5	29	y	0.17	12	59	12	59	y	0.23	14	47	14	47	y	0.16	11	56	11	56	y	ENSMUSG00000023353.15	Agap3	chr5	protein_coding	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3
known_NIR_14684	chr5	24703205	24704656	+	24698124	24704656	A5SS	ENSMUST00000197513.2	known	0.31	10	22	10	22	y	0.09	4	42	4	42	y	0.18	9	40	9	40	y	0.17	8	40	8	40	y	0.15	11	60	11	60	y	0.43	9	12	9	12	y	0.15	10	57	10	57	y	0.29	9	22	9	22	y	0.09	3	29	3	29	y	0.20	15	59	15	59	y	0.18	10	47	10	47	y	0.12	8	56	8	56	y	ENSMUSG00000023353.15	Agap3	chr5	protein_coding	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3
known_NIR_14685	chr5	24792121	24794095	+	24793298	24794095	A5SS	ENSMUST00000088295.9	known	0.00	0	37	0	37	n	0.00	0	47	0	47	n	0.00	0	80	0	80	n	0.05	2	42	2	42	y	0.00	0	63	0	63	n	0.02	1	50	1	50	n	0.03	2	64	2	64	y	0.00	0	41	0	41	n	0.00	0	44	0	44	n	0.02	1	51	1	51	n	0.00	0	41	0	41	n	0.00	0	53	0	53	n	ENSMUSG00000038181.17	Chpf2	chr5	protein_coding	chondroitin polymerizing factor 2
known_NIR_14686	chr5	24891020	24894378	+	24891020	24894391	A3SS	ENSMUST00000197407.5	known	0.73	19	7	19	7	y	0.47	9	10	9	10	y	0.48	14	15	14	15	y	0.55	12	10	12	10	y	0.80	28	7	28	7	y	0.57	8	6	8	6	y	0.49	18	19	18	19	y	0.58	14	10	14	10	y	0.40	10	15	10	15	y	0.71	15	6	15	6	y	0.58	7	5	7	5	y	0.86	24	4	24	4	y	ENSMUSG00000028954.12	Nub1	chr5	protein_coding	negative regulator of ubiquitin-like proteins 1
known_NIR_14687	chr5	25094186	25113321	-	25094183	25113321	A3SS	ENSMUST00000030784.14	known	0.33	10	20	10	20	y	0.25	7	21	7	21	y	0.23	6	20	6	20	y	0.11	4	33	4	33	y	0.35	19	35	19	35	y	0.20	3	12	3	12	y	0.25	14	41	14	41	y	0.11	2	16	2	16	y	0.15	4	23	4	23	y	0.27	12	33	12	33	y	0.30	7	16	7	16	y	0.29	14	35	14	35	y	ENSMUSG00000028944.15	Prkag2	chr5	protein_coding	protein kinase, AMP-activated, gamma 2 non-catalytic subunit
known_NIR_14688	chr5	25113390	25113863	-	25113390	25152422	A5SS	ENSMUST00000030784.14	known	0.00	0	30	0	30	n	0.00	0	29	0	29	n	0.00	0	23	0	23	n	0.00	0	29	0	29	n	0.00	0	46	0	46	n	0.00	0	15	0	15	n	0.05	2	42	2	42	y	0.00	0	29	0	29	n	0.00	0	23	0	23	n	0.00	0	41	0	41	n	0.00	0	30	0	30	n	0.00	0	44	0	44	n	ENSMUSG00000028944.15	Prkag2	chr5	protein_coding	protein kinase, AMP-activated, gamma 2 non-catalytic subunit
known_NIR_14689	chr5	25486398	25486671	-	25486398	25486659	A5SS	ENSMUST00000174734.8	known	0.64	16	9	16	9	y	0.68	13	6	13	6	y	0.56	20	16	20	16	y	0.54	25	21	25	21	y	0.71	29	12	29	12	y	0.50	6	6	6	6	y	0.57	16	12	16	12	y	0.53	10	9	10	9	y	0.62	13	8	13	8	y	0.55	23	19	23	19	y	0.73	16	6	16	6	y	0.64	21	12	21	12	y	ENSMUSG00000038056.16	Kmt2c	chr5	protein_coding	lysine (K)-specific methyltransferase 2C
known_NIR_14690	chr5	25498246	25503868	-	25500608	25503868	A3SS&ES	ENSMUST00000174734.8	known	0.10	1	9	1	9	n	0.17	1	5	1	5	n	0.13	2	13	2	13	y	0.06	1	15	1	15	n	0.06	1	16	1	16	n	0.38	3	5	3	5	n	0.18	2	9	2	9	y	0.33	1	2	1	2	n	0.25	2	6	2	6	n	0.14	2	12	2	12	y	0.67	2	1	2	1	n	0.14	1	6	1	6	n	ENSMUSG00000038056.16	Kmt2c	chr5	protein_coding	lysine (K)-specific methyltransferase 2C
known_NIR_14691	chr5	27986483	27988679	-	27986483	27988728	A5SS	ENSMUST00000002291.12	known	0.00	0	9	0	9	n	0.08	1	12	1	12	n	0.00	0	13	0	13	n	0.08	1	11	1	11	n	0.25	6	18	6	18	y	0.00	0	10	0	10	n	0.09	1	10	1	10	n	0.00	0	14	0	14	n	0.10	1	9	1	9	n	0.00	0	16	0	16	n	0.20	4	16	4	16	y	0.00	0	16	0	16	n	ENSMUSG00000002221.12	Paxip1	chr5	protein_coding	PAX interacting (with transcription-activation domain) protein 1
known_NIR_14692	chr5	28544306;28547512	28547393;28557470	+	28544306	28557470	cassetteExon	ENSMUST00000090355.11	known	0.43	10.5	14	5;16	14	y	0.29	9.5	23	8;11	23	y	0.71	17.0	7	18;16	7	y	0.39	17.5	27	12;23	27	y	0.60	21.0	14	16;26	14	y	0.33	3.5	7	2;5	7	y	0.56	20.5	16	29;12	16	y	0.56	7.5	6	9;6	6	y	0.72	13.0	5	16;10	5	y	0.50	17.0	17	15;19	17	y	0.57	14.5	11	11;18	11	y	0.40	14.0	21	12;16	21	y	ENSMUSG00000048271.15	Rbm33	chr5	protein_coding	RNA binding motif protein 33
known_NIR_14693	chr5	28599668	28613253	+	28599668	28613250	A3SS	ENSMUST00000114884.8	known	0.22	5	18	5	18	y	0.24	4	13	4	13	y	0.30	7	16	7	16	y	0.44	18	23	18	23	y	0.34	10	19	10	19	y	0.26	5	14	5	14	y	0.21	5	19	5	19	y	0.29	6	15	6	15	y	0.35	9	17	9	17	y	0.32	13	28	13	28	y	0.45	13	16	13	16	y	0.24	10	31	10	31	y	ENSMUSG00000048271.15	Rbm33	chr5	protein_coding	RNA binding motif protein 33
known_NIR_14694	chr5	28618373	28618669	+	28618373	28618566	A3SS	ENSMUST00000114884.8	known	0.00	0	29	0	29	n	0.00	0	18	0	18	n	0.00	0	32	0	32	n	0.05	2	39	2	39	y	0.00	0	41	0	41	n	0.00	0	19	0	19	n	0.00	0	39	0	39	n	0.00	0	24	0	24	n	0.00	0	39	0	39	n	0.00	0	65	0	65	n	0.00	0	34	0	34	n	0.00	0	55	0	55	n	ENSMUSG00000048271.15	Rbm33	chr5	protein_coding	RNA binding motif protein 33
known_NIR_14695	chr5	29568953	29569919	-	29568953	29583125	A5SS	ENSMUST00000055195.11	known	0.20	1	4	1	4	n	0.67	2	1	2	1	n	0.62	5	3	5	3	n	1.00	4	0	4	0	n	0.33	2	4	2	4	n	0.44	4	5	4	5	n	0.40	2	3	2	3	n	1.00	7	0	7	0	n	0.50	1	1	1	1	n	0.83	5	1	5	1	n	0.60	3	2	3	2	n	0.83	10	2	10	2	y	ENSMUSG00000010721.16	Lmbr1	chr5	protein_coding	limb region 1
known_NIR_14696	chr5	29795954;29797300	29797117;29802067	+	29795954	29802067	cassetteExon	ENSMUST00000049453.9	known	0.06	1.5	24	2;1	24	n	0.00	0.0	20	0;0	20	n	0.10	4.5	39	4;5	39	y	0.00	0.0	52	0;0	52	n	0.00	0.0	54	0;0	54	n	0.06	1.5	24	2;1	24	n	0.01	0.5	34	0;1	34	n	0.00	0.0	28	0;0	28	n	0.00	0.0	27	0;0	27	n	0.03	1.0	37	1;1	37	n	0.08	1.5	17	0;3	17	n	0.04	1.5	34	2;1	34	n	ENSMUSG00000039000.9	Ube3c	chr5	protein_coding	ubiquitin protein ligase E3C
known_NIR_14697	chr5	29958650	29961232	+	29958650	29969397	A3SS	ENSMUST00000008733.15	known	0.03	6	195	6	195	y	0.02	3	134	3	134	y	0.01	1	192	1	192	n	0.01	3	218	3	218	y	0.00	1	210	1	210	n	0.00	0	102	0	102	n	0.01	3	202	3	202	y	0.00	0	99	0	99	n	0.03	4	134	4	134	y	0.02	4	232	4	232	y	0.01	2	204	2	204	y	0.02	3	178	3	178	y	ENSMUSG00000029131.15	Dnajb6	chr5	protein_coding	DnaJ heat shock protein family (Hsp40) member B6
known_NIR_14698	chr5	29959589	29961232	+	29958650	29961232	A5SS	ENSMUST00000012734.10	known	0.45	5	6	5	6	y	0.50	3	3	3	3	n	0.75	3	1	3	1	n	0.50	3	3	3	3	n	0.88	7	1	7	1	n	1.00	2	0	2	0	n	0.70	7	3	7	3	y	1.00	3	0	3	0	n	0.33	2	4	2	4	n	0.43	3	4	3	4	n	0.60	3	2	3	2	n	0.50	3	3	3	3	n	ENSMUSG00000029131.15	Dnajb6	chr5	protein_coding	DnaJ heat shock protein family (Hsp40) member B6
known_NIR_14699	chr5	30267037	30268234	-	30267047	30268234	A3SS	ENSMUST00000141630.8	known	0.89	24	3	24	3	y	0.93	26	2	26	2	y	0.79	19	5	19	5	y	1.00	23	0	23	0	n	0.96	25	1	25	1	n	1.00	13	0	13	0	n	0.94	32	2	32	2	y	1.00	16	0	16	0	n	0.87	26	4	26	4	y	0.87	45	7	45	7	y	0.91	29	3	29	3	y	0.95	37	2	37	2	y	ENSMUSG00000025747.13	Tyms	chr5	protein_coding	thymidylate synthase
known_NIR_14700	chr5	30269184	30276632	-	30269184	30273464	A5SS&ES	ENSMUST00000154751.6	known	0.05	1	19	1	19	n	0.04	1	23	1	23	n	0.00	0	18	0	18	n	0.00	0	25	0	25	n	0.00	0	29	0	29	n	0.00	0	6	0	6	n	0.11	4	33	4	33	y	0.00	0	12	0	12	n	0.00	0	29	0	29	n	0.00	0	39	0	39	n	0.00	0	46	0	46	n	0.00	0	20	0	20	n	ENSMUSG00000025747.13	Tyms	chr5	protein_coding	thymidylate synthase
known_NIR_14701	chr5	30269184	30276632	-	30269184;30273638	30273464;30276632	ES	ENSMUST00000026846.11	known	0.05	1	18.5	1	19;18	n	0.05	1	18.5	1	23;14	n	0.00	0	17.5	0	18;17	n	0.00	0	25.0	0	25;25	n	0.00	0	22.0	0	29;15	n	0.00	0	11.5	0	6;17	n	0.14	4	25.0	4	33;17	y	0.00	0	14.0	0	12;16	n	0.00	0	23.0	0	29;17	n	0.00	0	36.5	0	39;34	n	0.00	0	30.5	0	46;15	n	0.00	0	24.0	0	20;28	n	ENSMUSG00000025747.13	Tyms	chr5	protein_coding	thymidylate synthase
known_NIR_14702	chr5	30273638	30276632	-	30273638	30274832	A5SS	ENSMUST00000154751.6	known	1.00	18	0	18	0	n	1.00	14	0	14	0	n	1.00	17	0	17	0	n	0.96	25	1	25	1	n	1.00	15	0	15	0	n	1.00	17	0	17	0	n	0.89	17	2	17	2	y	1.00	16	0	16	0	n	1.00	17	0	17	0	n	1.00	34	0	34	0	n	1.00	15	0	15	0	n	0.97	28	1	28	1	n	ENSMUSG00000025747.13	Tyms	chr5	protein_coding	thymidylate synthase
known_NIR_14703	chr5	30339137	30339977	-	30339174	30339977	A3SS	ENSMUST00000156859.3	known	0.00	0	485	0	485	n	0.00	1	379	1	379	n	0.00	0	978	0	978	n	0.00	0	768	0	768	n	0.00	0	947	0	947	n	0.00	0	487	0	487	n	0.00	1	1011	1	1011	n	0.00	0	596	0	596	n	0.00	0	510	0	510	n	0.00	2	973	2	973	y	0.00	0	587	0	587	n	0.00	2	721	2	721	y	ENSMUSG00000025745.13	Hadha	chr5	protein_coding	hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha
known_NIR_14704	chr5	30360380	30368667	+	30360337	30368667	A5SS	ENSMUST00000026841.15	known	0.54	44	38	44	38	y	0.33	30	61	30	61	y	0.49	106	110	106	110	y	0.43	84	112	84	112	y	0.46	94	110	94	110	y	0.45	51	63	51	63	y	0.39	97	153	97	153	y	0.42	53	74	53	74	y	0.42	48	67	48	67	y	0.38	76	122	76	122	y	0.35	48	89	48	89	y	0.45	71	88	71	88	y	ENSMUSG00000059447.14	Hadhb	chr5	protein_coding	hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta
known_NIR_14705	chr5	30360380	30368667	+	30360384	30368667	A5SS	ENSMUST00000114783.6	known	1.00	44	0	44	0	n	1.00	30	0	30	0	n	0.96	106	4	106	4	y	1.00	84	0	84	0	n	0.98	94	2	94	2	y	1.00	51	0	51	0	n	0.97	97	3	97	3	y	0.96	53	2	53	2	y	1.00	48	0	48	0	n	1.00	76	0	76	0	n	0.96	48	2	48	2	y	0.95	71	4	71	4	y	ENSMUSG00000059447.14	Hadhb	chr5	protein_coding	hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta
known_NIR_14706	chr5	30360384	30368667	+	30360337	30368667	A5SS	ENSMUST00000026841.15	known	0.00	0	38	0	38	n	0.00	0	61	0	61	n	0.04	4	110	4	110	y	0.00	0	112	0	112	n	0.02	2	110	2	110	y	0.00	0	63	0	63	n	0.02	3	153	3	153	y	0.03	2	74	2	74	y	0.00	0	67	0	67	n	0.00	0	122	0	122	n	0.02	2	89	2	89	y	0.04	4	88	4	88	y	ENSMUSG00000059447.14	Hadhb	chr5	protein_coding	hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta
known_NIR_14707	chr5	30374593	30377624	+	30374593	30379789	A3SS	ENSMUST00000123980.8	known	1.00	238	0	238	0	n	0.98	174	3	174	3	y	0.99	429	4	429	4	y	1.00	358	1	358	1	n	0.99	478	5	478	5	y	1.00	241	0	241	0	n	0.99	553	4	553	4	y	0.99	269	3	269	3	y	0.99	262	3	262	3	y	0.99	425	3	425	3	y	1.00	295	0	295	0	n	0.99	357	4	357	4	y	ENSMUSG00000059447.14	Hadhb	chr5	protein_coding	hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta
known_NIR_14708	chr5	30378995	30379789	+	30374593	30379789	A5SS	ENSMUST00000123980.8	known	1.00	255	0	255	0	n	0.99	209	3	209	3	y	0.99	429	4	429	4	y	1.00	404	1	404	1	n	0.99	486	5	486	5	y	1.00	260	0	260	0	n	0.99	567	4	567	4	y	0.99	291	3	291	3	y	0.99	262	3	262	3	y	0.99	502	3	502	3	y	1.00	284	0	284	0	n	0.99	368	4	368	4	y	ENSMUSG00000059447.14	Hadhb	chr5	protein_coding	hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta
known_NIR_14709	chr5	30462759	30468069	+	30462818	30468069	A5SS	ENSMUST00000145167.9	known	0.29	9	22	9	22	y	0.11	3	24	3	24	y	0.07	3	40	3	40	y	0.00	0	47	0	47	n	0.11	7	54	7	54	y	0.08	3	36	3	36	y	0.02	1	43	1	43	n	0.12	4	29	4	29	y	0.05	1	20	1	20	n	0.06	3	50	3	50	y	0.00	0	26	0	26	n	0.04	1	23	1	23	n	ENSMUSG00000075703.17	Selenoi	chr5	protein_coding	selenoprotein I
known_NIR_14710	chr5	30814188	30814721	+	30814201	30814721	A5SS	ENSMUST00000062962.12	known	0.00	0	38	0	38	n	0.06	3	51	3	51	y	0.02	1	53	1	53	n	0.14	4	25	4	25	y	0.03	2	69	2	69	y	0.02	1	42	1	42	n	0.00	0	44	0	44	n	0.00	0	33	0	33	n	0.04	1	24	1	24	n	0.06	2	34	2	34	y	0.03	1	31	1	31	n	0.02	1	49	1	49	n	ENSMUSG00000029175.18	Slc35f6	chr5	protein_coding	solute carrier family 35, member F6
known_NIR_14711	chr5	30824457;30827172	30827036;30829808	+	30824457	30829808	cassetteExon	ENSMUST00000144742.6	known	0.89	8.0	1	4;12	1	n	1.00	5.0	0	4;6	0	n	0.38	2.5	4	3;2	4	n	0.65	5.5	3	4;7	3	y	0.80	12.0	3	9;15	3	y	1.00	2.0	0	2;2	0	n	0.89	8.0	1	5;11	1	n	0.56	2.5	2	0;5	2	n	0.81	8.5	2	3;14	2	y	0.82	9.0	2	5;13	2	y	0.75	6.0	2	6;6	2	y	1.00	7.5	0	4;11	0	n	ENSMUSG00000029177.10	Cenpa	chr5	protein_coding	centromere protein A
known_NIR_14712	chr5	31020704	31021918	+	31020749	31021918	A5SS	ENSMUST00000031058.15	known	0.64	51	29	51	29	y	0.69	46	21	46	21	y	0.65	63	34	63	34	y	0.55	36	30	36	30	y	0.65	73	39	73	39	y	0.57	29	22	29	22	y	0.55	57	46	57	46	y	0.68	51	24	51	24	y	0.69	38	17	38	17	y	0.64	54	31	54	31	y	0.57	37	28	37	28	y	0.52	35	32	35	32	y	ENSMUSG00000029166.15	Mapre3	chr5	protein_coding	microtubule-associated protein, RP/EB family, member 3
known_NIR_14713	chr5	31030112	31030387	+	31030248	31030387	A5SS	ENSMUST00000202008.2	known	0.98	122	3	122	3	y	0.93	94	7	94	7	y	0.96	245	10	245	10	y	0.98	107	2	107	2	y	0.95	192	11	192	11	y	0.97	161	5	161	5	y	0.94	116	8	116	8	y	0.99	138	1	138	1	n	0.93	55	4	55	4	y	0.98	140	3	140	3	y	0.96	116	5	116	5	y	0.97	85	3	85	3	y	ENSMUSG00000038828.14	Tmem214	chr5	protein_coding	transmembrane protein 214
known_NIR_14714	chr5	31030112;31030248	31030205;31030387	+	31030112	31030387	cassetteExon	ENSMUST00000201203.4	known	0.01	1.5	122	0;3	122	n	0.05	5.0	94	3;7	94	y	0.02	6.0	245	2;10	245	y	0.01	1.0	107	0;2	107	n	0.04	7.5	192	4;11	192	y	0.02	4.0	161	3;5	161	y	0.05	6.0	116	4;8	116	y	0.00	0.5	138	0;1	138	n	0.04	2.5	55	1;4	55	n	0.01	2.0	140	1;3	140	n	0.02	2.5	116	0;5	116	n	0.03	2.5	85	2;3	85	y	ENSMUSG00000038828.14	Tmem214	chr5	protein_coding	transmembrane protein 214
known_NIR_14715	chr5	31048114;31048304	31048218;31048404	+	31048114	31048404	cassetteExon	ENSMUST00000200695.4	known	0.00	0.0	3	0;0	3	n	1.00	1.0	0	0;2	0	n	0.04	0.5	11	1;0	11	n	1.00	0.5	0	1;0	0	n	0.10	1.5	14	3;0	14	n	0.00	0.0	6	0;0	6	n	0.04	0.5	11	1;0	11	n	0.00	0.0	8	0;0	8	n	0.11	0.5	4	1;0	4	n	0.45	5.0	6	5;5	6	y	0.05	0.5	9	1;0	9	n	0.29	2.5	6	5;0	6	n	ENSMUSG00000029165.18	Agbl5	chr5	protein_coding	ATP/GTP binding protein-like 5
known_NIR_14716	chr5	31052543	31053113	+	31052543	31053110	A3SS	ENSMUST00000201167.4	known	0.00	0	14	0	14	n	0.15	2	11	2	11	y	0.05	1	18	1	18	n	0.00	0	6	0	6	n	0.07	1	14	1	14	n	0.20	1	4	1	4	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.06	1	16	1	16	n	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.20	2	8	2	8	y	ENSMUSG00000029165.18	Agbl5	chr5	protein_coding	ATP/GTP binding protein-like 5
known_NIR_14717	chr5	31062159	31062975	+	31062159;31062499	31062453;31062975	ES	ENSMUST00000201917.4	known	0.20	1	4.0	1	4;4	n	0.00	0	1.5	0	1;2	n	0.50	5	5.0	5	8;2	y	0.00	0	5.0	0	7;3	n	0.00	0	9.5	0	11;8	n	0.00	0	6.0	0	4;8	n	0.00	0	6.5	0	7;6	n	0.11	1	8.5	1	10;7	n	0.11	1	8.0	1	8;8	n	0.00	0	5.0	0	8;2	n	0.00	0	2.0	0	2;2	n	0.11	1	8.5	1	10;7	n	ENSMUSG00000029165.18	Agbl5	chr5	protein_coding	ATP/GTP binding protein-like 5
known_NIR_14718	chr5	31082199	31085787	+	31082199;31084500	31084366;31085787	ES	ENSMUST00000201621.4	known	0.01	9	816.5	9	752;881	y	0.02	16	786.5	16	698;875	y	0.02	18	966.5	18	891;1042	y	0.01	11	937.5	11	866;1009	y	0.02	13	826.5	13	770;883	y	0.03	12	448.0	12	455;441	y	0.01	15	1003.5	15	896;1111	y	0.02	6	357.0	6	329;385	y	0.01	10	827.0	10	774;880	y	0.01	13	1409.0	13	1318;1500	y	0.01	9	1176.5	9	1081;1272	y	0.01	14	990.5	14	881;1100	y	ENSMUSG00000029162.16	Khk	chr5	protein_coding	ketohexokinase
known_NIR_14719	chr5	31082199;31084166	31084032;31084366	+	31082199	31084366	cassetteExon	ENSMUST00000201621.4	known	0.04	30.0	752	32;28	752	y	0.04	26.5	698	26;27	698	y	0.03	26.0	891	32;20	891	y	0.04	33.5	866	34;33	866	y	0.02	19.5	770	19;20	770	y	0.02	10.0	455	14;6	455	y	0.05	45.0	896	40;50	896	y	0.03	9.0	329	11;7	329	y	0.04	36.0	774	41;31	774	y	0.03	46.5	1318	50;43	1318	y	0.03	38.5	1081	38;39	1081	y	0.04	39.5	881	42;37	881	y	ENSMUSG00000029162.16	Khk	chr5	protein_coding	ketohexokinase
known_NIR_14720	chr5	31082199;31084166	31084032;31085787	+	31082199	31085787	cassetteExon	ENSMUST00000201571.4	known	0.66	17.5	9	32;3	9	y	0.50	16.0	16	26;6	16	y	0.54	21.0	18	32;10	18	y	0.66	21.0	11	34;8	11	y	0.50	13.0	13	19;7	13	y	0.44	9.5	12	14;5	12	y	0.62	25.0	15	40;10	15	y	0.56	7.5	6	11;4	6	y	0.71	24.0	10	41;7	10	y	0.68	28.0	13	50;6	13	y	0.73	24.0	9	38;10	9	y	0.64	25.0	14	42;8	14	y	ENSMUSG00000029162.16	Khk	chr5	protein_coding	ketohexokinase
known_NIR_14721	chr5	31082199;31084166	31084032;31085787	+	31082199;31084500	31084366;31085787	MXE	ENSMUST00000201621.4	known	0.02	17.5	816.5	32;3	752;881	y	0.02	16.0	786.5	26;6	698;875	y	0.02	21.0	966.5	32;10	891;1042	y	0.02	21.0	937.5	34;8	866;1009	y	0.02	13.0	826.5	19;7	770;883	y	0.02	9.5	448.0	14;5	455;441	y	0.02	25.0	1003.5	40;10	896;1111	y	0.02	7.5	357.0	11;4	329;385	y	0.03	24.0	827.0	41;7	774;880	y	0.02	28.0	1409.0	50;6	1318;1500	y	0.02	24.0	1176.5	38;10	1081;1272	y	0.02	25.0	990.5	42;8	881;1100	y	ENSMUSG00000029162.16	Khk	chr5	protein_coding	ketohexokinase
known_NIR_14722	chr5	31082199;31084500	31084032;31085787	+	31082199	31085787	cassetteExon	ENSMUST00000201571.4	known	0.98	456.5	9	32;881	9	y	0.97	450.5	16	26;875	16	y	0.97	537.0	18	32;1042	18	y	0.98	521.5	11	34;1009	11	y	0.97	451.0	13	19;883	13	y	0.95	227.5	12	14;441	12	y	0.97	575.5	15	40;1111	15	y	0.97	198.0	6	11;385	6	y	0.98	460.5	10	41;880	10	y	0.98	775.0	13	50;1500	13	y	0.99	655.0	9	38;1272	9	y	0.98	571.0	14	42;1100	14	y	ENSMUSG00000029162.16	Khk	chr5	protein_coding	ketohexokinase
known_NIR_14723	chr5	31084166	31085787	+	31084166;31084500	31084366;31085787	ES	ENSMUST00000031053.15	known	0.01	3	454.5	3	28;881	y	0.01	6	451.0	6	27;875	y	0.02	10	531.0	10	20;1042	y	0.02	8	521.0	8	33;1009	y	0.02	7	451.5	7	20;883	y	0.02	5	223.5	5	6;441	y	0.02	10	580.5	10	50;1111	y	0.02	4	196.0	4	7;385	y	0.02	7	455.5	7	31;880	y	0.01	6	771.5	6	43;1500	y	0.02	10	655.5	10	39;1272	y	0.01	8	568.5	8	37;1100	y	ENSMUSG00000029162.16	Khk	chr5	protein_coding	ketohexokinase
known_NIR_14724	chr5	31113081	31113606	-	31113081	31113274	5pMXE	ENSMUST00000202472.2	known	0.02	5	312	5	312	y	0.01	3	354	3	354	y	0.03	13	476	13	476	y	0.04	11	249	11	249	y	0.03	12	426	12	426	y	0.01	2	262	2	262	y	0.03	11	398	11	398	y	0.03	7	263	7	263	y	0.01	3	232	3	232	y	0.01	3	343	3	343	y	0.02	8	337	8	337	y	0.02	6	297	6	297	y	ENSMUSG00000045302.14	Preb	chr5	protein_coding	prolactin regulatory element binding
known_NIR_14725	chr5	31113081	31113606	-	31113081;31113433	31113274;31113606	ES	ENSMUST00000074840.12	known	0.02	5	294.0	5	312;276	y	0.01	3	319.5	3	354;285	y	0.03	13	432.0	13	476;388	y	0.04	11	260.0	11	249;271	y	0.03	12	391.5	12	426;357	y	0.01	2	248.5	2	262;235	y	0.03	11	342.0	11	398;286	y	0.03	7	238.5	7	263;214	y	0.01	3	201.5	3	232;171	y	0.01	3	320.0	3	343;297	y	0.03	8	299.0	8	337;261	y	0.02	6	276.0	6	297;255	y	ENSMUSG00000045302.14	Preb	chr5	protein_coding	prolactin regulatory element binding
known_NIR_14726	chr5	31113081	31113606	-	31113433	31113606	3pMXE	ENSMUST00000202904.2	known	0.02	5	276	5	276	y	0.01	3	285	3	285	y	0.03	13	388	13	388	y	0.04	11	271	11	271	y	0.03	12	357	12	357	y	0.01	2	235	2	235	y	0.04	11	286	11	286	y	0.03	7	214	7	214	y	0.02	3	171	3	171	y	0.01	3	297	3	297	y	0.03	8	261	8	261	y	0.02	6	255	6	255	y	ENSMUSG00000045302.14	Preb	chr5	protein_coding	prolactin regulatory element binding
known_NIR_14727	chr5	31113081	31115232	-	31113081	31113274	5pMXE	ENSMUST00000202472.2	known	0.00	1	312	1	312	n	0.01	4	354	4	354	y	0.01	3	476	3	476	y	0.00	1	249	1	249	n	0.02	8	426	8	426	y	0.00	0	262	0	262	n	0.01	2	398	2	398	y	0.01	2	263	2	263	y	0.00	1	232	1	232	n	0.00	0	343	0	343	n	0.00	1	337	1	337	n	0.01	2	297	2	297	y	ENSMUSG00000045302.14	Preb	chr5	protein_coding	prolactin regulatory element binding
known_NIR_14728	chr5	31113081;31113433	31113274;31115232	-	31113081	31115232	cassetteExon	ENSMUST00000201002.4	known	0.99	157.5	1	312;3	1	n	0.98	177.0	4	354;0	4	n	0.99	240.0	3	476;4	3	y	0.99	125.0	1	249;1	1	n	0.96	213.0	8	426;0	8	n	1.00	132.5	0	262;3	0	n	0.99	200.5	2	398;3	2	y	0.99	133.5	2	263;4	2	y	0.99	116.0	1	232;0	1	n	1.00	172.5	0	343;2	0	n	0.99	168.5	1	337;0	1	n	0.99	149.5	2	297;2	2	y	ENSMUSG00000045302.14	Preb	chr5	protein_coding	prolactin regulatory element binding
known_NIR_14729	chr5	31113081;31113433	31113274;31115232	-	31113081;31113678	31113606;31115232	MXE	ENSMUST00000202567.2	known	0.51	157.5	151.0	312;3	5;297	y	0.50	177.0	176.0	354;0	3;349	n	0.47	240.0	275.5	476;4	13;538	y	0.44	125.0	161.0	249;1	11;311	n	0.48	213.0	230.5	426;0	12;449	n	0.49	132.5	137.0	262;3	2;272	y	0.54	200.5	171.5	398;3	11;332	y	0.48	133.5	142.5	263;4	7;278	y	0.53	116.0	104.0	232;0	3;205	n	0.49	172.5	176.5	343;2	3;350	y	0.54	168.5	144.5	337;0	8;281	n	0.50	149.5	151.0	297;2	6;296	y	ENSMUSG00000045302.14	Preb	chr5	protein_coding	prolactin regulatory element binding
known_NIR_14730	chr5	31113081;31113678	31113274;31115232	-	31113081	31115232	cassetteExon	ENSMUST00000201002.4	known	1.00	304.5	1	312;297	1	n	0.99	351.5	4	354;349	4	y	0.99	507.0	3	476;538	3	y	1.00	280.0	1	249;311	1	n	0.98	437.5	8	426;449	8	y	1.00	267.0	0	262;272	0	n	0.99	365.0	2	398;332	2	y	0.99	270.5	2	263;278	2	y	1.00	218.5	1	232;205	1	n	1.00	346.5	0	343;350	0	n	1.00	309.0	1	337;281	1	n	0.99	296.5	2	297;296	2	y	ENSMUSG00000045302.14	Preb	chr5	protein_coding	prolactin regulatory element binding
known_NIR_14731	chr5	31113081;31113678	31113606;31115232	-	31113081	31115232	cassetteExon	ENSMUST00000201002.4	known	0.99	151.0	1	5;297	1	n	0.98	176.0	4	3;349	4	y	0.99	275.5	3	13;538	3	y	0.99	161.0	1	11;311	1	n	0.97	230.5	8	12;449	8	y	1.00	137.0	0	2;272	0	n	0.99	171.5	2	11;332	2	y	0.99	142.5	2	7;278	2	y	0.99	104.0	1	3;205	1	n	1.00	176.5	0	3;350	0	n	0.99	144.5	1	8;281	1	n	0.99	151.0	2	6;296	2	y	ENSMUSG00000045302.14	Preb	chr5	protein_coding	prolactin regulatory element binding
known_NIR_14732	chr5	31113433	31115232	-	31113433;31113678	31113606;31115232	ES	ENSMUST00000074840.12	known	0.01	3	286.5	3	276;297	y	0.00	0	317.0	0	285;349	n	0.01	4	463.0	4	388;538	y	0.00	1	291.0	1	271;311	n	0.00	0	403.0	0	357;449	n	0.01	3	253.5	3	235;272	y	0.01	3	309.0	3	286;332	y	0.02	4	246.0	4	214;278	y	0.00	0	188.0	0	171;205	n	0.01	2	323.5	2	297;350	y	0.00	0	271.0	0	261;281	n	0.01	2	275.5	2	255;296	y	ENSMUSG00000045302.14	Preb	chr5	protein_coding	prolactin regulatory element binding
known_NIR_14733	chr5	31116280	31116510	-	31116280	31116567	A5SS	ENSMUST00000201821.4	known	0.00	0	226	0	226	n	0.00	0	201	0	201	n	0.01	3	331	3	331	y	0.00	0	231	0	231	n	0.00	0	305	0	305	n	0.00	0	207	0	207	n	0.00	0	236	0	236	n	0.00	0	217	0	217	n	0.00	0	166	0	166	n	0.00	0	271	0	271	n	0.01	2	179	2	179	y	0.00	0	185	0	185	n	ENSMUSG00000045302.14	Preb	chr5	protein_coding	prolactin regulatory element binding
known_NIR_14734	chr5	31116756	31116848	-	31116756	31117315	A5SS	ENSMUST00000074840.12	known	0.02	4	256	4	256	y	0.02	5	246	5	246	y	0.01	4	469	4	469	y	0.00	1	296	1	296	n	0.02	7	400	7	400	y	0.00	1	257	1	257	n	0.01	2	261	2	261	y	0.00	0	238	0	238	n	0.01	1	173	1	173	n	0.01	2	273	2	273	y	0.01	2	270	2	270	y	0.01	2	215	2	215	y	ENSMUSG00000045302.14	Preb	chr5	protein_coding	prolactin regulatory element binding
known_NIR_14735	chr5	31116756	31117240	-	31116756	31117315	A5SS	ENSMUST00000074840.12	known	0.01	2	256	2	256	y	0.01	3	246	3	246	y	0.00	0	469	0	469	n	0.00	0	296	0	296	n	0.00	2	400	2	400	y	0.00	0	257	0	257	n	0.00	0	261	0	261	n	0.00	1	238	1	238	n	0.01	1	173	1	173	n	0.00	0	273	0	273	n	0.00	0	270	0	270	n	0.01	3	215	3	215	y	ENSMUSG00000045302.14	Preb	chr5	protein_coding	prolactin regulatory element binding
known_NIR_14736	chr5	31205143	31205310	-	31205143	31206096	A5SS	ENSMUST00000080431.8	known	0.50	1	1	1	1	n	0.50	3	3	3	3	n	0.71	5	2	5	2	n	0.85	11	2	11	2	y	0.89	8	1	8	1	n	-	-	-	-	-	-	1.00	5	0	5	0	n	0.50	4	4	4	4	n	0.57	4	3	4	3	n	0.83	10	2	10	2	y	0.83	5	1	5	1	n	0.60	3	2	3	2	n	ENSMUSG00000006641.13	Slc5a6	chr5	protein_coding	solute carrier family 5 (sodium-dependent vitamin transporter), member 6
known_NIR_14737	chr5	31206408	31206806	+	31206100	31206806	A5SS	ENSMUST00000201887.4	known	0.00	1	296	1	296	n	0.00	1	264	1	264	n	0.00	0	290	0	290	n	0.01	2	322	2	322	y	0.00	2	426	2	426	y	0.02	4	187	4	187	y	0.01	4	410	4	410	y	0.02	5	234	5	234	y	0.00	1	255	1	255	n	0.01	3	436	3	436	y	0.01	4	292	4	292	y	0.01	2	371	2	371	y	ENSMUSG00000013622.16	Atraid	chr5	protein_coding	all-trans retinoic acid induced differentiation factor
known_NIR_14738	chr5	31206827	31209541	+	31206924	31209541	A5SS	ENSMUST00000201174.4	known	0.02	7	335	7	335	y	0.02	8	356	8	356	y	0.01	4	320	4	320	y	0.01	3	369	3	369	y	0.01	4	481	4	481	y	0.01	2	207	2	207	y	0.02	7	449	7	449	y	0.01	3	257	3	257	y	0.02	5	282	5	282	y	0.01	6	466	6	466	y	0.02	9	354	9	354	y	0.01	5	382	5	382	y	ENSMUSG00000013622.16	Atraid	chr5	protein_coding	all-trans retinoic acid induced differentiation factor
known_NIR_14739	chr5	31209612	31210107	+	31209612;31209877	31209806;31210107	ES	ENSMUST00000201174.4	known	0.00	0	341.0	0	310;372	n	0.01	3	380.5	3	362;399	y	0.00	0	336.0	0	316;356	n	0.00	0	337.5	0	342;333	n	0.01	3	538.0	3	513;563	y	0.00	0	224.5	0	219;230	n	0.00	0	503.0	0	500;506	n	0.00	0	252.0	0	243;261	n	0.00	0	325.5	0	311;340	n	0.01	3	522.0	3	483;561	y	0.00	0	387.5	0	361;414	n	0.00	0	427.0	0	390;464	n	ENSMUSG00000013622.16	Atraid	chr5	protein_coding	all-trans retinoic acid induced differentiation factor
known_NIR_14740	chr5	31211402	31211659	+	31211402	31211607	A3SS	ENSMUST00000201887.4	known	0.04	18	400	18	400	y	0.06	28	438	28	438	y	0.07	24	342	24	342	y	0.03	12	356	12	356	y	0.04	19	472	19	472	y	0.07	15	190	15	190	y	0.06	34	550	34	550	y	0.06	13	217	13	217	y	0.02	7	338	7	338	y	0.04	24	577	24	577	y	0.03	12	419	12	419	y	0.04	19	442	19	442	y	ENSMUSG00000013622.16	Atraid	chr5	protein_coding	all-trans retinoic acid induced differentiation factor
known_NIR_14741	chr5	31232529;31232865	31232815;31233153	+	31232529	31233153	cassetteExon	ENSMUST00000013773.12	known	0.04	0.5	13	0;1	13	n	0.11	3.0	25	2;4	25	y	0.15	9.0	51	11;7	51	y	0.08	1.5	18	2;1	18	n	0.23	9.5	31	11;8	31	y	0.03	1.5	44	2;1	44	n	0.30	3.5	8	5;2	8	y	0.10	3.5	33	4;3	33	y	0.18	3.0	14	2;4	14	y	0.08	1.0	12	0;2	12	n	0.11	2.5	20	5;0	20	n	0.27	5.5	15	7;4	15	y	ENSMUSG00000013629.17	Cad	chr5	protein_coding	carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase
known_NIR_14742	chr5	31302096	31302584	-	31302096	31302590	A5SS	ENSMUST00000154241.8	known	0.01	1	95	1	95	n	0.02	2	85	2	85	y	0.03	6	167	6	167	y	0.02	3	128	3	128	y	0.03	5	169	5	169	y	0.00	0	71	0	71	n	0.00	0	155	0	155	n	0.01	1	99	1	99	n	0.01	1	69	1	69	n	0.01	1	174	1	174	n	0.00	0	131	0	131	n	0.01	1	134	1	134	n	ENSMUSG00000107283.4	Mpv17	chr5	protein_coding	MpV17 mitochondrial inner membrane protein
known_NIR_14743	chr5	31302096	31302839	-	31302096;31302622	31302590;31302839	ES	ENSMUST00000154241.8	known	0.00	0	95.5	0	95;96	n	0.00	0	93.0	0	85;101	n	0.01	1	170.0	1	167;173	n	0.02	2	122.0	2	128;116	y	0.00	0	178.0	0	169;187	n	0.00	0	75.0	0	71;79	n	0.01	2	151.0	2	155;147	y	0.01	1	103.5	1	99;108	n	0.00	0	69.0	0	69;69	n	0.01	2	176.5	2	174;179	y	0.00	0	126.0	0	131;121	n	0.00	0	134.0	0	134;134	n	ENSMUSG00000107283.4	Mpv17	chr5	protein_coding	MpV17 mitochondrial inner membrane protein
known_NIR_14744	chr5	31302096	31302839	-	31302622	31302839	3pMXE	ENSMUST00000202614.4	known	0.00	0	96	0	96	n	0.00	0	101	0	101	n	0.01	1	173	1	173	n	0.02	2	116	2	116	y	0.00	0	187	0	187	n	0.00	0	79	0	79	n	0.01	2	147	2	147	y	0.01	1	108	1	108	n	0.00	0	69	0	69	n	0.01	2	179	2	179	y	0.00	0	121	0	121	n	0.00	0	134	0	134	n	ENSMUSG00000107283.4	Mpv17	chr5	protein_coding	MpV17 mitochondrial inner membrane protein
known_NIR_14745	chr5	31302096;31302622	31302584;31302839	-	31302096	31302839	cassetteExon	ENSMUST00000200744.4	known	1.00	48.5	0	1;96	0	n	1.00	51.5	0	2;101	0	n	0.99	89.5	1	6;173	1	n	0.97	59.5	2	3;116	2	y	1.00	96.0	0	5;187	0	n	1.00	39.5	0	0;79	0	n	0.97	73.5	2	0;147	2	n	0.98	54.5	1	1;108	1	n	1.00	35.0	0	1;69	0	n	0.98	90.0	2	1;179	2	n	1.00	60.5	0	0;121	0	n	1.00	67.5	0	1;134	0	n	ENSMUSG00000107283.4	Mpv17	chr5	protein_coding	MpV17 mitochondrial inner membrane protein
known_NIR_14746	chr5	31302909	31303028	-	31302934	31303028	A3SS	ENSMUST00000154241.8	known	0.01	1	118	1	118	n	0.00	0	117	0	117	n	0.01	3	202	3	202	y	0.01	1	96	1	96	n	0.01	2	193	2	193	y	0.00	0	94	0	94	n	0.00	0	160	0	160	n	0.00	0	102	0	102	n	0.02	2	82	2	82	y	0.00	0	171	0	171	n	0.00	0	113	0	113	n	0.00	0	155	0	155	n	ENSMUSG00000107283.4	Mpv17	chr5	protein_coding	MpV17 mitochondrial inner membrane protein
known_NIR_14747	chr5	31311086	31311435	-	31311086	31311535	A5SS	ENSMUST00000154241.8	known	0.04	1	25	1	25	n	0.03	1	28	1	28	n	0.04	2	47	2	47	y	0.03	1	37	1	37	n	0.00	0	60	0	60	n	0.07	2	26	2	26	y	0.04	2	46	2	46	y	0.00	0	26	0	26	n	0.04	1	26	1	26	n	0.00	0	57	0	57	n	0.00	0	31	0	31	n	0.00	0	32	0	32	n	ENSMUSG00000107283.4	Mpv17	chr5	protein_coding	MpV17 mitochondrial inner membrane protein
known_NIR_14748	chr5	31315111	31315487	-	31311634	31315487	A3SS	ENSMUST00000136581.3	known	1.00	90	0	90	0	n	1.00	90	0	90	0	n	1.00	76	0	76	0	n	1.00	72	0	72	0	n	0.98	130	3	130	3	y	1.00	46	0	46	0	n	1.00	88	0	88	0	n	1.00	50	0	50	0	n	1.00	65	0	65	0	n	0.99	125	1	125	1	n	1.00	78	0	78	0	n	0.99	94	1	94	1	n	ENSMUSG00000101678.4	Gm29609	chr5	protein_coding	predicted gene 29609
known_NIR_14749	chr5	31330405	31331112	-	31330855	31331112	3pMXE	ENSMUST00000201468.4	known	0.70	26	11	26	11	y	0.84	27	5	27	5	y	0.91	53	5	53	5	y	0.87	45	7	45	7	y	0.70	42	18	42	18	y	0.69	25	11	25	11	y	0.78	32	9	32	9	y	0.74	29	10	29	10	y	0.84	26	5	26	5	y	0.77	40	12	40	12	y	0.88	30	4	30	4	y	0.65	43	23	43	23	y	ENSMUSG00000106864.4	Gtf3c2	chr5	protein_coding	general transcription factor IIIC, polypeptide 2, beta
known_NIR_14750	chr5	31330405;31330855	31330727;31331112	-	31330405	31331112	cassetteExon	ENSMUST00000101411.6	known	0.37	15.5	26	20;11	26	y	0.25	9.0	27	13;5	27	y	0.16	10.0	53	15;5	53	y	0.23	13.5	45	20;7	45	y	0.32	19.5	42	21;18	42	y	0.30	10.5	25	10;11	25	y	0.36	18.0	32	27;9	32	y	0.32	13.5	29	17;10	29	y	0.19	6.0	26	7;5	26	y	0.28	15.5	40	19;12	40	y	0.18	6.5	30	9;4	30	y	0.35	23.0	43	23;23	43	y	ENSMUSG00000101678.4	Gm29609	chr5	protein_coding	predicted gene 29609
known_NIR_14751	chr5	31331839	31336989	-	31331839	31337228	A5SS	ENSMUST00000101411.6	known	0.08	1	12	1	12	n	0.00	0	12	0	12	n	0.14	2	12	2	12	y	0.12	2	14	2	14	y	0.12	3	23	3	23	y	0.13	2	13	2	13	y	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.09	2	21	2	21	y	0.03	1	31	1	31	n	0.07	1	14	1	14	n	0.08	2	23	2	23	y	ENSMUSG00000101678.4	Gm29609	chr5	protein_coding	predicted gene 29609
known_NIR_14752	chr5	31347090	31347220	-	31347090	31347225	A5SS	ENSMUST00000077693.10	known	0.00	0	102	0	102	n	0.02	2	91	2	91	y	0.00	0	156	0	156	n	0.01	1	103	1	103	n	0.02	2	126	2	126	y	0.00	0	68	0	68	n	0.00	0	140	0	140	n	0.00	0	60	0	60	n	0.00	0	94	0	94	n	0.01	1	123	1	123	n	0.00	0	94	0	94	n	0.00	0	106	0	106	n	ENSMUSG00000029145.13	Eif2b4	chr5	protein_coding	eukaryotic translation initiation factor 2B, subunit 4 delta
known_NIR_14753	chr5	31348269	31348493	-	31348295	31348493	A3SS	ENSMUST00000077693.10	known	0.00	0	107	0	107	n	0.03	2	67	2	67	y	0.02	3	159	3	159	y	0.04	4	89	4	89	y	0.03	4	122	4	122	y	0.00	0	90	0	90	n	0.04	5	115	5	115	y	0.00	0	73	0	73	n	0.04	3	79	3	79	y	0.05	6	115	6	115	y	0.01	1	118	1	118	n	0.00	0	107	0	107	n	ENSMUSG00000029145.13	Eif2b4	chr5	protein_coding	eukaryotic translation initiation factor 2B, subunit 4 delta
known_NIR_14754	chr5	31349628	31349926	-	31349632	31349926	A3SS	ENSMUST00000077693.10	known	0.00	0	77	0	77	n	0.03	2	64	2	64	y	0.02	3	178	3	178	y	0.00	0	101	0	101	n	0.01	1	135	1	135	n	0.04	2	52	2	52	y	0.02	2	94	2	94	y	0.00	0	63	0	63	n	0.00	0	69	0	69	n	0.03	3	109	3	109	y	0.02	2	99	2	99	y	0.00	0	103	0	103	n	ENSMUSG00000029145.13	Eif2b4	chr5	protein_coding	eukaryotic translation initiation factor 2B, subunit 4 delta
known_NIR_14755	chr5	31350114	31350337	-	31349969	31350337	A3SS	ENSMUST00000077693.10	known	0.07	3	40	3	40	y	0.09	3	29	3	29	y	0.03	3	90	3	90	y	0.00	0	41	0	41	n	0.04	2	52	2	52	y	0.16	5	26	5	26	y	0.15	7	41	7	41	y	0.20	6	24	6	24	y	0.13	5	33	5	33	y	0.12	6	42	6	42	y	0.06	3	45	3	45	y	0.06	3	48	3	48	y	ENSMUSG00000029145.13	Eif2b4	chr5	protein_coding	eukaryotic translation initiation factor 2B, subunit 4 delta
known_NIR_14756	chr5	31350722	31351213	+	31350809	31351213	A5SS	ENSMUST00000031029.15	known	0.00	0	34	0	34	n	0.00	0	21	0	21	n	0.06	2	29	2	29	y	0.00	0	10	0	10	n	0.00	0	28	0	28	n	0.00	0	11	0	11	n	0.00	0	37	0	37	n	0.00	0	16	0	16	n	0.00	0	12	0	12	n	0.00	0	32	0	32	n	0.00	0	20	0	20	n	0.00	0	26	0	26	n	ENSMUSG00000029146.15	Snx17	chr5	protein_coding	sorting nexin 17
known_NIR_14757	chr5	31352257;31352623	31352550;31352759	+	31352257	31352759	cassetteExon	ENSMUST00000031029.15	known	0.10	2.5	23	3;2	23	y	0.09	3.0	29	4;2	29	y	0.10	4.0	36	5;3	36	y	0.11	3.0	25	3;3	25	y	0.14	9.0	54	11;7	54	y	0.04	1.0	23	2;0	23	n	0.07	3.5	47	2;5	47	y	0.07	2.0	26	0;4	26	n	0.14	2.5	15	2;3	15	y	0.09	3.0	31	5;1	31	n	0.07	3.0	41	2;4	41	y	0.14	5.0	32	5;5	32	y	ENSMUSG00000029146.15	Snx17	chr5	protein_coding	sorting nexin 17
known_NIR_14758	chr5	31403189	31404686	+	31403189;31403689	31403666;31404686	ES	ENSMUST00000202576.4	known	1.00	140	0.0	140	0;0	n	1.00	94	0.0	94	0;0	n	0.98	199	5.0	199	3;7	y	0.99	130	1.0	130	1;1	n	0.98	174	4.0	174	4;4	y	1.00	103	0.0	103	0;0	n	0.99	144	1.5	144	1;2	n	1.00	94	0.0	94	0;0	n	1.00	83	0.0	83	0;0	n	0.99	167	1.5	167	1;2	n	0.99	108	1.5	108	1;2	n	1.00	181	0.0	181	0;0	n	ENSMUSG00000029148.16	Nrbp1	chr5	protein_coding	nuclear receptor binding protein 1
known_NIR_14759	chr5	31450508	31450758	-	31450508	31450739	A5SS	ENSMUST00000202158.4	known	0.95	94	5	94	5	y	0.89	102	12	102	12	y	0.93	127	10	127	10	y	0.94	59	4	59	4	y	0.95	122	6	122	6	y	1.00	73	0	73	0	n	0.95	125	6	125	6	y	0.92	68	6	68	6	y	0.93	80	6	80	6	y	0.92	126	11	126	11	y	0.96	131	6	131	6	y	0.97	121	4	121	4	y	ENSMUSG00000038552.15	Fndc4	chr5	protein_coding	fibronectin type III domain containing 4
known_NIR_14760	chr5	31455664	31456902	+	31455664;31456126	31456058;31456902	ES	ENSMUST00000201166.4	known	0.02	3	172.5	3	148;197	y	0.07	9	111.0	9	115;107	y	0.15	21	117.5	21	126;109	y	0.02	4	176.5	4	160;193	y	0.05	12	252.0	12	229;275	y	0.06	4	65.0	4	65;65	y	0.03	7	197.5	7	190;205	y	0.03	5	143.0	5	141;145	y	0.03	6	167.0	6	167;167	y	0.02	5	231.5	5	217;246	y	0.03	6	166.0	6	167;165	y	0.03	8	246.0	8	240;252	y	ENSMUSG00000059434.10	Gckr	chr5	protein_coding	glucokinase regulatory protein
known_NIR_14761	chr5	31455664	31456902	+	31456126	31456902	5pMXE	ENSMUST00000202312.4	known	0.01	3	197	3	197	y	0.08	9	107	9	107	y	0.16	21	109	21	109	y	0.02	4	193	4	193	y	0.04	12	275	12	275	y	0.06	4	65	4	65	y	0.03	7	205	7	205	y	0.03	5	145	5	145	y	0.03	6	167	6	167	y	0.02	5	246	5	246	y	0.04	6	165	6	165	y	0.03	8	252	8	252	y	ENSMUSG00000059434.10	Gckr	chr5	protein_coding	glucokinase regulatory protein
known_NIR_14762	chr5	31457989	31459501	+	31457989;31458209	31458156;31459501	ES	ENSMUST00000201166.4	known	0.01	4	311.0	4	288;334	y	0.03	6	228.0	6	213;243	y	0.04	10	220.5	10	181;260	y	0.01	4	266.5	4	265;268	y	0.04	15	379.5	15	364;395	y	0.04	5	136.0	5	127;145	y	0.03	11	381.0	11	351;411	y	0.06	11	170.0	11	156;184	y	0.02	4	262.5	4	247;278	y	0.01	4	359.5	4	305;414	y	0.00	0	270.5	0	225;316	n	0.01	5	394.5	5	383;406	y	ENSMUSG00000059434.10	Gckr	chr5	protein_coding	glucokinase regulatory protein
known_NIR_14763	chr5	31481957	31483701	+	31482065	31483701	A5SS	ENSMUST00000201166.4	known	0.01	4	286	4	286	y	0.01	3	306	3	306	y	0.01	1	175	1	175	n	0.02	4	242	4	242	y	0.01	5	340	5	340	y	0.01	1	155	1	155	n	0.00	0	408	0	408	n	0.01	2	152	2	152	y	0.01	3	267	3	267	y	0.01	3	393	3	393	y	0.01	3	294	3	294	y	0.00	1	341	1	341	n	ENSMUSG00000059434.10	Gckr	chr5	protein_coding	glucokinase regulatory protein
known_NIR_14764	chr5	31609921	31622790	+	31609921;31610557	31610499;31622790	ES	ENSMUST00000076264.8	known	0.75	6	2.0	6	1;3	n	0.75	3	1.0	3	1;1	n	0.20	1	4.0	1	2;6	n	0.55	3	2.5	3	1;4	n	0.40	2	3.0	2	2;4	n	0.00	0	3.5	0	2;5	n	0.29	2	5.0	2	2;8	y	0.80	4	1.0	4	0;2	n	0.80	4	1.0	4	0;2	n	0.36	4	7.0	4	4;10	y	0.00	0	2.0	0	1;3	n	0.00	0	4.5	0	5;4	n	ENSMUSG00000062761.8	Zfp512	chr5	protein_coding	zinc finger protein 512
known_NIR_14765	chr5	31609921	31622790	+	31610557	31622790	5pMXE	ENSMUST00000201945.2	known	0.67	6	3	6	3	n	0.75	3	1	3	1	n	0.14	1	6	1	6	n	0.43	3	4	3	4	n	0.33	2	4	2	4	n	0.00	0	5	0	5	n	0.20	2	8	2	8	y	0.67	4	2	4	2	n	0.67	4	2	4	2	n	0.29	4	10	4	10	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000062761.8	Zfp512	chr5	protein_coding	zinc finger protein 512
known_NIR_14766	chr5	31624019	31625498	+	31624019;31624790	31624666;31625498	ES	ENSMUST00000076264.8	known	0.40	6	9.0	6	9;9	y	0.11	1	8.0	1	5;11	n	0.00	0	10.5	0	11;10	n	0.10	1	9.5	1	10;9	n	0.06	1	15.0	1	12;18	n	0.00	0	5.0	0	5;5	n	0.16	2	10.5	2	9;12	y	0.09	1	10.0	1	8;12	n	0.08	1	12.0	1	10;14	n	0.07	1	14.0	1	13;15	n	0.11	1	8.0	1	7;9	n	0.00	0	8.5	0	8;9	n	ENSMUSG00000062761.8	Zfp512	chr5	protein_coding	zinc finger protein 512
known_NIR_14767	chr5	31697841	31705955	+	31697841;31701257	31701014;31705955	ES	ENSMUST00000114533.9	known	0.15	4	23.5	4	35;12	y	0.00	0	27.5	0	36;19	n	0.13	7	46.5	7	62;31	y	0.07	2	27.5	2	41;14	y	0.20	6	23.5	6	33;14	y	0.17	2	10.0	2	16;4	y	0.14	4	25.5	4	30;21	y	0.17	3	14.5	3	21;8	y	0.15	3	17.0	3	29;5	y	0.28	8	20.5	8	26;15	y	0.16	4	21.5	4	30;13	y	0.12	3	22.5	3	28;17	y	ENSMUSG00000029141.17	Slc4a1ap	chr5	protein_coding	solute carrier family 4 (anion exchanger), member 1, adaptor protein
known_NIR_14768	chr5	31697841	31705955	+	31701257	31705955	5pMXE	ENSMUST00000202299.4	known	0.25	4	12	4	12	y	0.00	0	19	0	19	n	0.18	7	31	7	31	y	0.12	2	14	2	14	y	0.30	6	14	6	14	y	0.33	2	4	2	4	n	0.16	4	21	4	21	y	0.27	3	8	3	8	y	0.38	3	5	3	5	n	0.35	8	15	8	15	y	0.24	4	13	4	13	y	0.15	3	17	3	17	y	ENSMUSG00000029141.17	Slc4a1ap	chr5	protein_coding	solute carrier family 4 (anion exchanger), member 1, adaptor protein
known_NIR_14769	chr5	31701257	31705955	+	31701257	31703524	A3SS&ES	ENSMUST00000202273.4	known	0.71	12	5	12	5	y	0.86	19	3	19	3	y	0.79	31	8	31	8	y	0.64	14	8	14	8	y	0.67	14	7	14	7	y	0.50	4	4	4	4	n	0.75	21	7	21	7	y	0.62	8	5	8	5	y	0.56	5	4	5	4	n	0.75	15	5	15	5	y	0.72	13	5	13	5	y	0.81	17	4	17	4	y	ENSMUSG00000029141.17	Slc4a1ap	chr5	protein_coding	solute carrier family 4 (anion exchanger), member 1, adaptor protein
known_NIR_14770	chr5	31701257	31705958	+	31701257	31703524	A3SS&ES	ENSMUST00000202950.4	known	0.17	1	5	1	5	n	0.62	5	3	5	3	n	0.33	4	8	4	8	y	0.33	4	8	4	8	y	0.30	3	7	3	7	y	0.20	1	4	1	4	n	0.22	2	7	2	7	n	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.62	8	5	8	5	y	0.38	3	5	3	5	n	0.50	4	4	4	4	n	ENSMUSG00000029141.17	Slc4a1ap	chr5	protein_coding	solute carrier family 4 (anion exchanger), member 1, adaptor protein
known_NIR_14771	chr5	31701257	31705958	+	31701257	31705955	A3SS	ENSMUST00000114533.9	known	0.08	1	12	1	12	n	0.21	5	19	5	19	y	0.11	4	31	4	31	y	0.22	4	14	4	14	y	0.18	3	14	3	14	y	0.20	1	4	1	4	n	0.09	2	21	2	21	y	0.00	0	8	0	8	n	0.17	1	5	1	5	n	0.35	8	15	8	15	y	0.19	3	13	3	13	y	0.19	4	17	4	17	y	ENSMUSG00000029141.17	Slc4a1ap	chr5	protein_coding	solute carrier family 4 (anion exchanger), member 1, adaptor protein
known_NIR_14772	chr5	31701257	31705958	+	31701257;31703610	31703524;31705958	ES	ENSMUST00000202273.4	known	0.20	1	4.0	1	5;3	n	0.62	5	3.0	5	3;3	y	0.50	4	4.0	4	8;0	n	0.44	4	5.0	4	8;2	y	0.43	3	4.0	3	7;1	n	0.29	1	2.5	1	4;1	n	0.31	2	4.5	2	7;2	y	0.00	0	3.0	0	5;1	n	0.29	1	2.5	1	4;1	n	0.67	8	4.0	8	5;3	y	0.43	3	4.0	3	5;3	y	0.67	4	2.0	4	4;0	n	ENSMUSG00000029141.17	Slc4a1ap	chr5	protein_coding	solute carrier family 4 (anion exchanger), member 1, adaptor protein
known_NIR_14773	chr5	31701257;31703610	31703524;31705955	+	31701257	31705955	cassetteExon	ENSMUST00000114533.9	known	0.27	4.5	12	5;4	12	y	0.17	4.0	19	3;5	19	y	0.16	6.0	31	8;4	31	y	0.30	6.0	14	8;4	14	y	0.28	5.5	14	7;4	14	y	0.47	3.5	4	4;3	4	y	0.21	5.5	21	7;4	21	y	0.45	6.5	8	5;8	8	y	0.47	4.5	5	4;5	5	y	0.25	5.0	15	5;5	15	y	0.30	5.5	13	5;6	13	y	0.24	5.5	17	4;7	17	y	ENSMUSG00000029141.17	Slc4a1ap	chr5	protein_coding	solute carrier family 4 (anion exchanger), member 1, adaptor protein
known_NIR_14774	chr5	31703610	31705955	+	31697841	31705955	A5SS	ENSMUST00000201925.2	known	0.50	4	4	4	4	n	1.00	5	0	5	0	n	0.36	4	7	4	7	y	0.67	4	2	4	2	n	0.40	4	6	4	6	y	0.60	3	2	3	2	n	0.50	4	4	4	4	n	0.73	8	3	8	3	y	0.62	5	3	5	3	n	0.38	5	8	5	8	y	0.60	6	4	6	4	y	0.70	7	3	7	3	y	ENSMUSG00000029141.17	Slc4a1ap	chr5	protein_coding	solute carrier family 4 (anion exchanger), member 1, adaptor protein
known_NIR_14775	chr5	31771366	31771947	+	31771366	31786960	A3SS	ENSMUST00000202655.4	known	1.00	161	0	161	0	n	1.00	198	0	198	0	n	1.00	205	0	205	0	n	1.00	187	0	187	0	n	0.99	217	2	217	2	y	1.00	131	0	131	0	n	1.00	260	0	260	0	n	1.00	153	0	153	0	n	1.00	187	0	187	0	n	1.00	248	1	248	1	n	1.00	182	0	182	0	n	1.00	248	0	248	0	n	ENSMUSG00000106918.4	Mrpl33	chr5	protein_coding	mitochondrial ribosomal protein L33
known_NIR_14776	chr5	31771366	31773725	+	31771366;31771965	31771947;31773725	ES	ENSMUST00000031024.14	known	0.00	0	191.5	0	161;222	n	0.04	9	231.0	9	198;264	y	0.02	4	234.0	4	205;263	y	0.04	10	220.0	10	187;253	y	0.01	3	251.0	3	217;285	y	0.01	2	145.0	2	131;159	y	0.02	7	294.0	7	260;328	y	0.01	1	187.5	1	153;222	n	0.04	8	218.5	8	187;250	y	0.01	4	278.5	4	248;309	y	0.01	3	206.5	3	182;231	y	0.02	7	274.5	7	248;301	y	ENSMUSG00000106918.4	Mrpl33	chr5	protein_coding	mitochondrial ribosomal protein L33
known_NIR_14777	chr5	31771366	31773725	+	31771965	31773725	A5SS&ES	ENSMUST00000201483.4	known	0.00	0	222	0	222	n	0.03	9	264	9	264	y	0.01	4	263	4	263	y	0.04	10	253	10	253	y	0.01	3	285	3	285	y	0.01	2	159	2	159	y	0.02	7	328	7	328	y	0.00	1	222	1	222	n	0.03	8	250	8	250	y	0.01	4	309	4	309	y	0.01	3	231	3	231	y	0.02	7	301	7	301	y	ENSMUSG00000106918.4	Mrpl33	chr5	protein_coding	mitochondrial ribosomal protein L33
known_NIR_14778	chr5	31771611	31771947	+	31771366	31771947	A5SS	ENSMUST00000031024.14	known	0.01	2	161	2	161	y	0.01	2	198	2	198	y	0.00	1	205	1	205	n	0.00	0	187	0	187	n	0.01	3	217	3	217	y	0.01	1	131	1	131	n	0.01	2	260	2	260	y	0.00	0	153	0	153	n	0.02	3	187	3	187	y	0.00	1	248	1	248	n	0.01	1	182	1	182	n	0.00	0	248	0	248	n	ENSMUSG00000106918.4	Mrpl33	chr5	protein_coding	mitochondrial ribosomal protein L33
known_NIR_14779	chr5	31782000	31805065	-	31782000	31797561	5pMXE	ENSMUST00000201744.2	known	0.97	61	2	61	2	y	0.95	80	4	80	4	y	1.00	66	0	66	0	n	1.00	54	0	54	0	n	1.00	72	0	72	0	n	1.00	53	0	53	0	n	1.00	64	0	64	0	n	1.00	38	0	38	0	n	1.00	47	0	47	0	n	0.99	84	1	84	1	n	0.98	54	1	54	1	n	1.00	42	0	42	0	n	ENSMUSG00000029136.10	Rbks	chr5	protein_coding	ribokinase
known_NIR_14780	chr5	31855341	31859170	+	31855421	31859170	A5SS	ENSMUST00000201352.4	known	0.00	0	55	0	55	n	0.00	0	58	0	58	n	0.00	0	92	0	92	n	0.00	0	70	0	70	n	0.00	0	79	0	79	n	0.00	0	42	0	42	n	0.00	0	67	0	67	n	0.00	0	41	0	41	n	0.04	2	48	2	48	y	0.00	0	89	0	89	n	0.00	0	65	0	65	n	0.00	0	84	0	84	n	ENSMUSG00000052139.19	Babam2	chr5	protein_coding	BRISC and BRCA1 A complex member 2
known_NIR_14781	chr5	31978016	32058399	+	31978016	31988429	3pMXE	ENSMUST00000201202.4	known	0.00	0	61	0	61	n	0.00	0	57	0	57	n	0.00	0	73	0	73	n	0.01	1	76	1	76	n	0.00	0	70	0	70	n	0.00	0	51	0	51	n	0.00	0	66	0	66	n	0.02	1	42	1	42	n	0.00	0	64	0	64	n	0.00	0	84	0	84	n	0.03	2	56	2	56	y	0.00	0	78	0	78	n	ENSMUSG00000052139.19	Babam2	chr5	protein_coding	BRISC and BRCA1 A complex member 2
known_NIR_14782	chr5	31978016	32058399	+	31978016;31988503	31988429;32058399	ES	ENSMUST00000201352.4	known	0.00	0	60.0	0	61;59	n	0.00	0	56.5	0	57;56	n	0.00	0	87.0	0	73;101	n	0.01	1	66.0	1	76;56	n	0.00	0	67.0	0	70;64	n	0.00	0	51.0	0	51;51	n	0.00	0	67.0	0	66;68	n	0.02	1	40.5	1	42;39	n	0.00	0	67.5	0	64;71	n	0.00	0	77.5	0	84;71	n	0.03	2	56.0	2	56;56	y	0.00	0	78.5	0	78;79	n	ENSMUSG00000052139.19	Babam2	chr5	protein_coding	BRISC and BRCA1 A complex member 2
known_NIR_14783	chr5	32769181	32797675	+	32768719	32797675	A5SS	ENSMUST00000202543.4	known	0.50	5	5	5	5	y	0.86	6	1	6	1	n	0.60	9	6	9	6	y	0.56	15	12	15	12	y	0.47	7	8	7	8	y	0.46	6	7	6	7	y	0.09	1	10	1	10	n	0.62	15	9	15	9	y	0.20	3	12	3	12	y	0.52	11	10	11	10	y	0.46	6	7	6	7	y	0.46	12	14	12	14	y	ENSMUSG00000014932.16	Yes1	chr5	protein_coding	YES proto-oncogene 1, Src family tyrosine kinase
known_NIR_14784	chr5	32896717	32897968	-	32896717	32922117	A5SS	ENSMUST00000142779.8	known	0.07	3	40	3	40	y	0.19	7	30	7	30	y	0.09	5	52	5	52	y	0.02	1	40	1	40	n	0.11	8	64	8	64	y	0.12	4	29	4	29	y	0.12	5	37	5	37	y	0.08	3	34	3	34	y	0.05	2	40	2	40	y	0.10	5	45	5	45	y	0.07	3	42	3	42	y	0.09	4	42	4	42	y	ENSMUSG00000023452.20	Pisd	chr5	protein_coding	phosphatidylserine decarboxylase
known_NIR_14785	chr5	33021656	33021924	+	33021656	33021921	A3SS	ENSMUST00000150130.8	known	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.15	2	11	2	11	y	0.22	2	7	2	7	n	0.00	0	9	0	9	n	ENSMUSG00000037426.19	Depdc5	chr5	protein_coding	DEP domain containing 5
known_NIR_14786	chr5	33036021	33050719	+	33036021	33044323	3pMXE	ENSMUST00000149350.8	known	0.20	1	4	1	4	n	0.25	1	3	1	3	n	0.15	2	11	2	11	y	0.08	1	11	1	11	n	0.22	2	7	2	7	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.14	1	6	1	6	n	0.25	1	3	1	3	n	0.20	2	8	2	8	y	0.00	0	6	0	6	n	0.29	4	10	4	10	y	ENSMUSG00000037426.19	Depdc5	chr5	protein_coding	DEP domain containing 5
known_NIR_14787	chr5	33036021	33050719	+	33036021;33044392	33044323;33050719	ES	ENSMUST00000118698.8	known	0.25	1	3.0	1	4;2	n	0.40	1	1.5	1	3;0	n	0.21	2	7.5	2	11;4	y	0.11	1	8.5	1	11;6	n	0.25	2	6.0	2	7;5	y	0.00	0	2.0	0	2;2	n	0.00	0	3.0	0	1;5	n	0.15	1	5.5	1	6;5	n	0.29	1	2.5	1	3;2	n	0.27	2	5.5	2	8;3	y	0.00	0	6.5	0	6;7	n	0.33	4	8.0	4	10;6	y	ENSMUSG00000037426.19	Depdc5	chr5	protein_coding	DEP domain containing 5
known_NIR_14788	chr5	33091359	33094865	+	33091359	33094892	A3SS	ENSMUST00000049780.13	known	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	20	0	20	n	0.00	0	21	0	21	n	0.00	0	3	0	3	n	0.18	2	9	2	9	y	0.00	0	8	0	8	n	0.20	1	4	1	4	n	0.00	0	13	0	13	n	0.18	2	9	2	9	y	0.00	0	19	0	19	n	ENSMUSG00000037426.19	Depdc5	chr5	protein_coding	DEP domain containing 5
known_NIR_14789	chr5	33113302	33121976	+	33113302;33116690	33116625;33121976	ES	ENSMUST00000087897.11	known	0.86	6	1.0	6	2;0	n	0.67	5	2.5	5	2;3	y	0.92	6	0.5	6	1;0	n	1.00	14	0.0	14	0;0	n	0.82	9	2.0	9	1;3	n	1.00	16	0.0	16	0;0	n	0.88	18	2.5	18	2;3	y	0.95	10	0.5	10	0;1	n	1.00	20	0.0	20	0;0	n	0.97	15	0.5	15	0;1	n	1.00	13	0.0	13	0;0	n	0.92	17	1.5	17	2;1	n	ENSMUSG00000037426.19	Depdc5	chr5	protein_coding	DEP domain containing 5
known_NIR_14790	chr5	33141374;33144340	33144280;33148086	+	33141374	33148086	cassetteExon	ENSMUST00000087897.11	known	0.89	16.5	2	16;17	2	y	1.00	15.5	0	15;16	0	n	1.00	12.5	0	17;8	0	n	0.85	11.5	2	15;8	2	y	0.93	13.0	1	16;10	1	n	0.83	9.5	2	12;7	2	y	1.00	17.0	0	16;18	0	n	1.00	8.0	0	11;5	0	n	0.88	14.0	2	16;12	2	y	0.95	19.5	1	21;18	1	n	0.82	4.5	1	6;3	1	n	0.71	12.5	5	14;11	5	y	ENSMUSG00000037426.19	Depdc5	chr5	protein_coding	DEP domain containing 5
known_NIR_14791	chr5	33374807;33375004	33374917;33375292	-	33374807	33375292	cassetteExon	ENSMUST00000046186.8	known	0.00	0.0	5	0;0	5	n	0.00	0.0	3	0;0	3	n	0.09	1.0	10	1;1	10	n	0.27	1.5	4	3;0	4	n	0.16	4.5	23	6;3	23	y	0.04	0.5	12	0;1	12	n	0.15	2.5	14	3;2	14	y	0.31	5.0	11	7;3	11	y	0.09	0.5	5	0;1	5	n	0.09	2.0	21	2;2	21	y	0.33	2.0	4	3;1	4	n	0.00	0.0	5	0;0	5	n	ENSMUSG00000037379.8	Spon2	chr5	protein_coding	spondin 2, extracellular matrix protein
known_NIR_14792	chr5	33406027	33406451	-	33406030	33406451	A3SS	ENSMUST00000079746.10	known	0.15	13	73	13	73	y	0.23	24	80	24	80	y	0.16	14	76	14	76	y	0.23	13	44	13	44	y	0.22	20	72	20	72	y	0.12	6	45	6	45	y	0.11	14	110	14	110	y	0.19	10	42	10	42	y	0.20	13	51	13	51	y	0.22	23	83	23	83	y	0.14	14	87	14	87	y	0.10	9	84	9	84	y	ENSMUSG00000037373.13	Ctbp1	chr5	protein_coding	C-terminal binding protein 1
known_NIR_14793	chr5	33416688	33424227	-	33416688;33418497	33418353;33424227	ES	ENSMUST00000079746.10	known	0.03	3	98.5	3	98;99	y	0.00	0	84.0	0	98;70	n	0.00	0	124.0	0	146;102	n	0.00	0	99.5	0	119;80	n	0.00	0	137.0	0	165;109	n	0.03	2	73.0	2	81;65	y	0.00	0	153.5	0	175;132	n	0.00	0	68.0	0	79;57	n	0.00	0	83.5	0	95;72	n	0.00	0	145.0	0	167;123	n	0.00	0	97.0	0	107;87	n	0.00	0	124.5	0	142;107	n	ENSMUSG00000037373.13	Ctbp1	chr5	protein_coding	C-terminal binding protein 1
known_NIR_14794	chr5	33416688	33424227	-	33418497	33424227	3pMXE	ENSMUST00000202632.2	known	0.03	3	99	3	99	y	0.00	0	70	0	70	n	0.00	0	102	0	102	n	0.00	0	80	0	80	n	0.00	0	109	0	109	n	0.03	2	65	2	65	y	0.00	0	132	0	132	n	0.00	0	57	0	57	n	0.00	0	72	0	72	n	0.00	0	123	0	123	n	0.00	0	87	0	87	n	0.00	0	107	0	107	n	ENSMUSG00000037373.13	Ctbp1	chr5	protein_coding	C-terminal binding protein 1
known_NIR_14795	chr5	33418497	33432123	-	33418497;33424381	33424227;33432123	ES	ENSMUST00000079746.10	known	0.00	0	55.0	0	99;11	n	0.00	0	37.0	0	70;4	n	0.00	0	56.0	0	102;10	n	0.00	0	45.0	0	80;10	n	0.00	0	65.5	0	109;22	n	0.00	0	34.5	0	65;4	n	0.03	2	74.5	2	132;17	y	0.00	0	31.0	0	57;5	n	0.00	0	38.5	0	72;5	n	0.00	0	63.0	0	123;3	n	0.00	0	46.5	0	87;6	n	0.00	0	56.0	0	107;5	n	ENSMUSG00000037373.13	Ctbp1	chr5	protein_coding	C-terminal binding protein 1
known_NIR_14796	chr5	33424381	33432123	-	33424381	33426786	5pMXE	ENSMUST00000201275.4	known	0.09	11	113	11	113	y	0.06	4	66	4	66	y	0.07	10	140	10	140	y	0.08	10	114	10	114	y	0.12	22	156	22	156	y	0.05	4	70	4	70	y	0.10	17	151	17	151	y	0.05	5	87	5	87	y	0.05	5	91	5	91	y	0.02	3	161	3	161	y	0.05	6	112	6	112	y	0.04	5	117	5	117	y	ENSMUSG00000037373.13	Ctbp1	chr5	protein_coding	C-terminal binding protein 1
known_NIR_14797	chr5	33424381;33426978	33426786;33432123	-	33424381	33432123	cassetteExon	ENSMUST00000079746.10	known	0.87	76.0	11	113;39	11	y	0.92	48.0	4	66;30	4	y	0.91	103.0	10	140;66	10	y	0.89	83.5	10	114;53	10	y	0.83	110.0	22	156;64	22	y	0.93	53.5	4	70;37	4	y	0.86	106.0	17	151;61	17	y	0.92	61.5	5	87;36	5	y	0.92	54.5	5	91;18	5	y	0.97	111.5	3	161;62	3	y	0.92	73.0	6	112;34	6	y	0.95	88.0	5	117;59	5	y	ENSMUSG00000037373.13	Ctbp1	chr5	protein_coding	C-terminal binding protein 1
known_NIR_14798	chr5	33426978	33431892	-	33426978	33432123	A5SS	ENSMUST00000202868.4	known	0.00	0	39	0	39	n	0.17	6	30	6	30	y	0.01	1	66	1	66	n	0.00	0	53	0	53	n	0.00	0	64	0	64	n	0.00	0	37	0	37	n	0.03	2	61	2	61	y	0.00	0	36	0	36	n	0.00	0	18	0	18	n	0.00	0	62	0	62	n	0.00	0	34	0	34	n	0.00	0	59	0	59	n	ENSMUSG00000037373.13	Ctbp1	chr5	protein_coding	C-terminal binding protein 1
known_NIR_14799	chr5	33426978	33432123	-	33418497	33432123	A3SS	ENSMUST00000201575.4	known	1.00	39	0	39	0	n	1.00	30	0	30	0	n	1.00	66	0	66	0	n	1.00	53	0	53	0	n	1.00	64	0	64	0	n	1.00	37	0	37	0	n	0.97	61	2	61	2	y	1.00	36	0	36	0	n	1.00	18	0	18	0	n	1.00	62	0	62	0	n	1.00	34	0	34	0	n	1.00	59	0	59	0	n	ENSMUSG00000037373.13	Ctbp1	chr5	protein_coding	C-terminal binding protein 1
known_NIR_14800	chr5	33493755	33515784	+	33492989	33515784	A5SS	ENSMUST00000114449.7	known	0.00	0	55	0	55	n	0.00	0	52	0	52	n	0.07	10	127	10	127	y	0.00	0	80	0	80	n	0.00	0	87	0	87	n	0.04	3	64	3	64	y	0.00	0	82	0	82	n	0.00	0	60	0	60	n	0.00	0	60	0	60	n	0.00	0	85	0	85	n	0.00	0	69	0	69	n	0.00	0	57	0	57	n	ENSMUSG00000079562.8	Maea	chr5	protein_coding	macrophage erythroblast attacher
known_NIR_14801	chr5	33566893	33568307	+	33566893	33568203	A3SS	ENSMUST00000087864.12	known	0.12	1	7	1	7	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.11	1	8	1	8	n	0.00	0	9	0	9	n	0.14	1	6	1	6	n	0.25	2	6	2	6	n	0.08	1	11	1	11	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.11	1	8	1	8	n	0.45	5	6	5	6	y	ENSMUSG00000037355.15	Uvssa	chr5	protein_coding	UV stimulated scaffold protein A
known_NIR_14802	chr5	33765571;33765833	33765675;33767776	-	33765571	33767776	cassetteExon	ENSMUST00000065119.15	known	0.03	1.5	50	1;2	50	n	0.04	2.5	54	2;3	54	y	0.06	3.5	51	3;4	51	y	0.01	0.5	40	1;0	40	n	0.03	2.5	77	2;3	77	y	0.02	0.5	28	1;0	28	n	0.01	0.5	69	1;0	69	n	0.05	2.0	36	1;3	36	n	0.06	2.0	33	1;3	33	n	0.01	0.5	60	1;0	60	n	0.04	2.5	55	5;0	55	n	0.04	2.0	52	0;4	52	n	ENSMUSG00000037339.18	Fam53a	chr5	protein_coding	family with sequence similarity 53, member A
known_NIR_14803	chr5	33772178	33786193	-	33772178	33786197	A5SS	ENSMUST00000065119.15	known	0.00	0	63	0	63	n	0.09	5	52	5	52	y	0.04	2	53	2	53	y	0.00	0	54	0	54	n	0.12	9	64	9	64	y	0.17	6	30	6	30	y	0.05	4	80	4	80	y	0.00	0	33	0	33	n	0.18	6	27	6	27	y	0.07	6	78	6	78	y	0.08	5	54	5	54	y	0.02	1	56	1	56	n	ENSMUSG00000037339.18	Fam53a	chr5	protein_coding	family with sequence similarity 53, member A
known_NIR_14804	chr5	33772178	33786681	-	33772178	33786197	5pMXE	ENSMUST00000065162.11	known	0.03	2	63	2	63	y	0.04	2	52	2	52	y	0.00	0	53	0	53	n	0.07	4	54	4	54	y	0.02	1	64	1	64	n	0.00	0	30	0	30	n	0.04	3	80	3	80	y	0.00	0	33	0	33	n	0.04	1	27	1	27	n	0.00	0	78	0	78	n	0.05	3	54	3	54	y	0.00	0	56	0	56	n	ENSMUSG00000037339.18	Fam53a	chr5	protein_coding	family with sequence similarity 53, member A
known_NIR_14805	chr5	33772178	33786681	-	33772178;33786321	33786197;33786681	ES	ENSMUST00000065119.15	known	0.04	2	46.5	2	63;30	y	0.05	2	39.0	2	52;26	y	0.00	0	42.5	0	53;32	n	0.08	4	44.5	4	54;35	y	0.02	1	60.0	1	64;56	n	0.00	0	25.0	0	30;20	n	0.04	3	68.5	3	80;57	y	0.00	0	28.5	0	33;24	n	0.04	1	27.5	1	27;28	n	0.00	0	62.5	0	78;47	n	0.06	3	44.0	3	54;34	y	0.00	0	49.5	0	56;43	n	ENSMUSG00000037339.18	Fam53a	chr5	protein_coding	family with sequence similarity 53, member A
known_NIR_14806	chr5	33772178;33786321	33786193;33786681	-	33772178	33786681	cassetteExon	ENSMUST00000137705.8	known	0.88	15.0	2	0;30	2	n	0.89	15.5	2	5;26	2	y	1.00	17.0	0	2;32	0	n	0.81	17.5	4	0;35	4	n	0.97	32.5	1	9;56	1	n	1.00	13.0	0	6;20	0	n	0.91	30.5	3	4;57	3	y	1.00	12.0	0	0;24	0	n	0.94	17.0	1	6;28	1	n	1.00	26.5	0	6;47	0	n	0.87	19.5	3	5;34	3	y	1.00	22.0	0	1;43	0	n	ENSMUSG00000037339.18	Fam53a	chr5	protein_coding	family with sequence similarity 53, member A
known_NIR_14807	chr5	33802981	33807087	-	33802981;33803413	33803354;33807087	ES	ENSMUST00000075670.13	known	0.00	0	31.0	0	33;29	n	0.00	0	30.0	0	24;36	n	0.00	0	54.5	0	63;46	n	0.00	0	43.0	0	44;42	n	0.06	2	33.0	2	34;32	y	0.05	1	21.0	1	22;20	n	0.00	0	38.0	0	42;34	n	0.00	0	27.0	0	30;24	n	0.00	0	32.0	0	36;28	n	0.00	0	40.5	0	39;42	n	0.03	1	28.0	1	29;27	n	0.00	0	38.0	0	43;33	n	ENSMUSG00000004642.14	Slbp	chr5	protein_coding	stem-loop binding protein
known_NIR_14808	chr5	33802981	33807087	-	33803413	33807087	A3SS	ENSMUST00000148153.3	known	0.00	0	29	0	29	n	0.00	0	36	0	36	n	0.00	0	46	0	46	n	0.00	0	42	0	42	n	0.06	2	32	2	32	y	0.05	1	20	1	20	n	0.00	0	34	0	34	n	0.00	0	24	0	24	n	0.00	0	28	0	28	n	0.00	0	42	0	42	n	0.04	1	27	1	27	n	0.00	0	33	0	33	n	ENSMUSG00000004642.14	Slbp	chr5	protein_coding	stem-loop binding protein
known_NIR_14809	chr5	33811958	33812667	-	33811958;33812216	33812057;33812667	ES	ENSMUST00000019439.9	known	0.00	0	54.0	0	63;45	n	0.00	0	43.0	0	41;45	n	0.00	0	56.0	0	60;52	n	0.00	0	41.0	0	43;39	n	0.00	0	74.5	0	87;62	n	0.00	0	27.0	0	23;31	n	0.00	0	49.5	0	43;56	n	0.00	0	29.0	0	28;30	n	0.00	0	36.0	0	36;36	n	0.04	2	51.0	2	56;46	y	0.00	0	51.5	0	50;53	n	0.00	0	51.5	0	62;41	n	ENSMUSG00000019295.9	Tmem129	chr5	protein_coding	transmembrane protein 129
known_NIR_14810	chr5	33813141	33814616	-	33813141	33814906	A5SS	ENSMUST00000140931.2	known	0.33	2	4	2	4	n	0.00	0	9	0	9	n	0.56	5	4	5	4	n	0.67	6	3	6	3	n	0.33	3	6	3	6	n	0.43	3	4	3	4	n	0.45	5	6	5	6	y	0.73	8	3	8	3	y	0.29	2	5	2	5	n	0.50	8	8	8	8	y	0.75	3	1	3	1	n	0.43	3	4	3	4	n	ENSMUSG00000019295.9	Tmem129	chr5	protein_coding	transmembrane protein 129
known_NIR_14811	chr5	33813141	33814616	-	33813141	33814967	A5SS	ENSMUST00000019439.9	known	0.07	2	25	2	25	y	0.00	0	25	0	25	n	0.15	5	28	5	28	y	0.12	6	46	6	46	y	0.05	3	52	3	52	y	0.18	3	14	3	14	y	0.12	5	37	5	37	y	0.26	8	23	8	23	y	0.05	2	41	2	41	y	0.17	8	39	8	39	y	0.08	3	35	3	35	y	0.10	3	26	3	26	y	ENSMUSG00000019295.9	Tmem129	chr5	protein_coding	transmembrane protein 129
known_NIR_14812	chr5	33813141	33814906	-	33813141	33814967	A5SS	ENSMUST00000019439.9	known	0.14	4	25	4	25	y	0.26	9	25	9	25	y	0.12	4	28	4	28	y	0.06	3	46	3	46	y	0.10	6	52	6	52	y	0.22	4	14	4	14	y	0.14	6	37	6	37	y	0.12	3	23	3	23	y	0.11	5	41	5	41	y	0.17	8	39	8	39	y	0.03	1	35	1	35	n	0.13	4	26	4	26	y	ENSMUSG00000019295.9	Tmem129	chr5	protein_coding	transmembrane protein 129
known_NIR_14813	chr5	33879272	33879650	+	33879298	33879650	A5SS	ENSMUST00000201437.4	known	0.80	8	2	8	2	y	0.78	7	2	7	2	n	0.89	8	1	8	1	n	0.77	10	3	10	3	y	0.56	10	8	10	8	y	1.00	7	0	7	0	n	0.82	14	3	14	3	y	1.00	5	0	5	0	n	1.00	13	0	13	0	n	0.86	19	3	19	3	y	0.90	9	1	9	1	n	0.92	22	2	22	2	y	ENSMUSG00000054252.19	Fgfr3	chr5	protein_coding	fibroblast growth factor receptor 3
known_NIR_14814	chr5	33880674	33884991	+	33879855	33884991	A5SS	ENSMUST00000201437.4	known	0.00	0	26	0	26	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	31	0	31	n	0.03	1	37	1	37	n	0.17	1	5	1	5	n	0.00	0	19	0	19	n	0.07	1	14	1	14	n	0.16	3	16	3	16	y	0.04	1	25	1	25	n	0.00	0	19	0	19	n	0.00	0	21	0	21	n	ENSMUSG00000054252.19	Fgfr3	chr5	protein_coding	fibroblast growth factor receptor 3
known_NIR_14815	chr5	33881271	33884991	+	33879855	33884991	A5SS	ENSMUST00000201437.4	known	0.00	0	26	0	26	n	0.12	1	7	1	7	n	0.00	0	8	0	8	n	0.00	0	31	0	31	n	0.03	1	37	1	37	n	0.00	0	5	0	5	n	0.00	0	19	0	19	n	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.07	2	25	2	25	y	0.00	0	19	0	19	n	0.00	0	21	0	21	n	ENSMUSG00000054252.19	Fgfr3	chr5	protein_coding	fibroblast growth factor receptor 3
known_NIR_14816	chr5	33885260	33887025	+	33885260;33885589	33885536;33887025	ES	ENSMUST00000201437.4	known	0.00	0	18.0	0	21;15	n	0.00	0	11.0	0	12;10	n	0.18	1	4.5	1	5;4	n	0.03	1	28.0	1	30;26	n	0.09	3	30.5	3	36;25	y	0.00	0	3.5	0	4;3	n	0.14	3	19.0	3	19;19	y	0.08	1	12.0	1	11;13	n	0.06	1	16.0	1	16;16	n	0.05	2	36.0	2	34;38	y	0.00	0	17.0	0	16;18	n	0.00	0	31.5	0	28;35	n	ENSMUSG00000054252.19	Fgfr3	chr5	protein_coding	fibroblast growth factor receptor 3
known_NIR_14817	chr5	33887678;33888775	33888625;33890066	+	33887678;33889605	33889461;33890066	MXE	ENSMUST00000067150.14	known	0.78	15.5	4.5	24;7	3;6	y	0.69	10.0	4.5	5;15	2;7	y	0.77	5.0	1.5	6;4	1;2	n	0.83	17.5	3.5	24;11	0;7	n	0.79	27.0	7.0	25;29	2;12	y	0.90	4.5	0.5	3;6	0;1	n	0.78	14.0	4.0	16;12	2;6	y	0.74	11.5	4.0	12;11	1;7	n	0.84	13.0	2.5	15;11	0;5	n	0.77	24.0	7.0	31;17	0;14	n	0.80	16.0	4.0	17;15	0;8	n	0.82	20.5	4.5	23;18	2;7	y	ENSMUSG00000054252.19	Fgfr3	chr5	protein_coding	fibroblast growth factor receptor 3
known_NIR_14818	chr5	33888775	33890066	+	33889605	33890066	A5SS	ENSMUST00000134610.8	known	0.54	7	6	7	6	y	0.68	15	7	15	7	y	0.67	4	2	4	2	n	0.61	11	7	11	7	y	0.71	29	12	29	12	y	0.86	6	1	6	1	n	0.67	12	6	12	6	y	0.61	11	7	11	7	y	0.69	11	5	11	5	y	0.55	17	14	17	14	y	0.65	15	8	15	8	y	0.72	18	7	18	7	y	ENSMUSG00000054252.19	Fgfr3	chr5	protein_coding	fibroblast growth factor receptor 3
known_NIR_14819	chr5	33890256	33890598	+	33890256	33890601	A3SS	ENSMUST00000067150.14	known	0.12	3	21	3	21	y	0.12	3	23	3	23	y	0.33	3	6	3	6	n	0.21	4	15	4	15	y	0.35	20	37	20	37	y	0.40	4	6	4	6	y	0.33	7	14	7	14	y	0.12	3	21	3	21	y	0.20	5	20	5	20	y	0.28	10	26	10	26	y	0.32	12	26	12	26	y	0.19	7	30	7	30	y	ENSMUSG00000054252.19	Fgfr3	chr5	protein_coding	fibroblast growth factor receptor 3
known_NIR_14820	chr5	33936008	33939818	-	33936012	33939818	A3SS	ENSMUST00000005431.6	known	0.03	2	61	2	61	y	0.00	0	44	0	44	n	0.00	0	70	0	70	n	0.00	0	85	0	85	n	0.00	0	85	0	85	n	0.00	0	52	0	52	n	0.01	1	69	1	69	n	0.05	2	40	2	40	y	0.00	0	67	0	67	n	0.00	0	103	0	103	n	0.00	0	70	0	70	n	0.01	1	81	1	81	n	ENSMUSG00000005299.7	Letm1	chr5	protein_coding	leucine zipper-EF-hand containing transmembrane protein 1
known_NIR_14821	chr5	33978221	34000456	+	33978221;33979072	33979003;34000456	ES	ENSMUST00000075812.11	known	0.35	4	7.5	4	5;10	y	0.00	0	2.5	0	3;2	n	0.64	15	8.5	15	6;11	y	0.00	0	7.5	0	2;13	n	0.38	4	6.5	4	7;6	y	0.67	4	2.0	4	1;3	n	0.63	6	3.5	6	3;4	y	0.12	1	7.0	1	5;9	n	0.50	2	2.0	2	0;4	n	0.43	3	4.0	3	3;5	y	0.80	2	0.5	2	0;1	n	0.00	0	5.5	0	7;4	n	ENSMUSG00000057406.17	Nsd2	chr5	protein_coding	nuclear receptor binding SET domain protein 2
known_NIR_14822	chr5	34022122	34024921	+	34022122	34024918	A3SS	ENSMUST00000075812.11	known	0.40	4	6	4	6	y	0.00	0	16	0	16	n	0.17	6	29	6	29	y	0.22	4	14	4	14	y	0.07	2	27	2	27	y	0.31	5	11	5	11	y	0.00	0	16	0	16	n	0.12	2	14	2	14	y	0.06	1	16	1	16	n	0.24	4	13	4	13	y	0.00	0	15	0	15	n	0.27	6	16	6	16	y	ENSMUSG00000057406.17	Nsd2	chr5	protein_coding	nuclear receptor binding SET domain protein 2
known_NIR_14823	chr5	34026222	34036402	+	34026222	34028751	3pMXE	ENSMUST00000114399.8	known	0.38	6	10	6	10	y	0.40	4	6	4	6	y	0.65	13	7	13	7	y	0.69	9	4	9	4	y	0.67	12	6	12	6	y	0.67	4	2	4	2	n	0.64	7	4	7	4	y	0.78	7	2	7	2	n	1.00	2	0	2	0	n	0.47	9	10	9	10	y	0.50	4	4	4	4	n	0.58	7	5	7	5	y	ENSMUSG00000057406.17	Nsd2	chr5	protein_coding	nuclear receptor binding SET domain protein 2
known_NIR_14824	chr5	34336268	34344673	-	34336268;34341687	34341658;34344673	ES	ENSMUST00000042701.13	known	0.00	0	83.5	0	88;79	n	0.00	0	72.5	0	76;69	n	0.02	2	116.5	2	120;113	y	0.00	0	129.0	0	127;131	n	0.01	1	153.0	1	160;146	n	0.00	0	90.5	0	91;90	n	0.00	0	119.5	0	125;114	n	0.00	0	83.5	0	87;80	n	0.00	0	101.0	0	109;93	n	0.00	0	159.5	0	163;156	n	0.00	0	100.0	0	102;98	n	0.00	0	118.5	0	111;126	n	ENSMUSG00000037235.14	Mxd4	chr5	protein_coding	Max dimerization protein 4
known_NIR_14825	chr5	34493828	34499866	+	34493885	34499866	A5SS	ENSMUST00000182709.8	known	0.14	15	90	15	90	y	0.07	5	71	5	71	y	0.13	15	104	15	104	y	0.13	17	111	17	111	y	0.11	18	149	18	149	y	0.08	6	69	6	69	y	0.15	21	115	21	115	y	0.15	12	68	12	68	y	0.08	8	97	8	97	y	0.11	18	146	18	146	y	0.09	8	82	8	82	y	0.23	29	99	29	99	y	ENSMUSG00000029110.14	Rnf4	chr5	protein_coding	ring finger protein 4
known_NIR_14826	chr5	34493885	34504119	+	34493885;34500023	34499866;34504119	ES	ENSMUST00000182709.8	known	0.00	0	113.0	0	90;136	n	0.00	0	69.5	0	71;68	n	0.00	0	125.0	0	104;146	n	0.01	1	138.0	1	111;165	n	0.00	0	153.0	0	149;157	n	0.01	1	66.5	1	69;64	n	0.02	3	139.0	3	115;163	y	0.01	1	81.5	1	68;95	n	0.00	0	109.0	0	97;121	n	0.01	1	155.0	1	146;164	n	0.00	0	95.5	0	82;109	n	0.00	0	124.5	0	99;150	n	ENSMUSG00000029110.14	Rnf4	chr5	protein_coding	ring finger protein 4
known_NIR_14827	chr5	34493885	34504119	+	34500023	34504119	A5SS&ES	ENSMUST00000030992.13	known	0.00	0	136	0	136	n	0.00	0	68	0	68	n	0.00	0	146	0	146	n	0.01	1	165	1	165	n	0.00	0	157	0	157	n	0.02	1	64	1	64	n	0.02	3	163	3	163	y	0.01	1	95	1	95	n	0.00	0	121	0	121	n	0.01	1	164	1	164	n	0.00	0	109	0	109	n	0.00	0	150	0	150	n	ENSMUSG00000029110.14	Rnf4	chr5	protein_coding	ring finger protein 4
known_NIR_14828	chr5	34494153	34499866	+	34493828	34499866	A5SS	ENSMUST00000030992.13	known	0.00	0	15	0	15	n	0.44	4	5	4	5	n	0.17	3	15	3	15	y	0.32	8	17	8	17	y	0.25	6	18	6	18	y	0.00	0	6	0	6	n	0.16	4	21	4	21	y	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.18	4	18	4	18	y	0.27	3	8	3	8	y	0.12	4	29	4	29	y	ENSMUSG00000029110.14	Rnf4	chr5	protein_coding	ring finger protein 4
known_NIR_14829	chr5	34494153	34499866	+	34493885	34499866	A5SS	ENSMUST00000182709.8	known	0.00	0	90	0	90	n	0.05	4	71	4	71	y	0.03	3	104	3	104	y	0.07	8	111	8	111	y	0.04	6	149	6	149	y	0.00	0	69	0	69	n	0.03	4	115	4	115	y	0.00	0	68	0	68	n	0.00	0	97	0	97	n	0.03	4	146	4	146	y	0.04	3	82	3	82	y	0.04	4	99	4	99	y	ENSMUSG00000029110.14	Rnf4	chr5	protein_coding	ring finger protein 4
known_NIR_14830	chr5	34602257	34616342	+	34602257;34615447	34615249;34616342	ES	ENSMUST00000180376.8	known	0.00	0	22.5	0	29;16	n	0.00	0	1.5	0	3;0	n	0.00	0	17.5	0	18;17	n	0.00	0	15.5	0	17;14	n	0.10	2	19.0	2	28;10	y	0.00	0	7.0	0	6;8	n	0.00	0	24.0	0	35;13	n	0.07	1	14.0	1	21;7	n	0.00	0	10.5	0	15;6	n	0.00	0	15.0	0	16;14	n	0.00	0	10.5	0	10;11	n	0.07	1	12.5	1	17;8	n	ENSMUSG00000037210.17	Fam193a	chr5	protein_coding	family with sequence homology 193, member A
known_NIR_14831	chr5	34658341	34660881	-	34658341	34658802	5pMXE	ENSMUST00000143072.2	known	0.91	10	1	10	1	n	1.00	19	0	19	0	n	0.97	28	1	28	1	n	0.90	9	1	9	1	n	0.93	25	2	25	2	y	0.92	12	1	12	1	n	0.90	18	2	18	2	y	0.91	10	1	10	1	n	1.00	19	0	19	0	n	1.00	11	0	11	0	n	1.00	11	0	11	0	n	0.90	19	2	19	2	y	ENSMUSG00000059866.14	Tnip2	chr5	protein_coding	TNFAIP3 interacting protein 2
known_NIR_14832	chr5	34658341	34660881	-	34658893	34660881	3pMXE	ENSMUST00000137555.2	known	1.00	10	0	10	0	n	1.00	19	0	19	0	n	1.00	28	0	28	0	n	0.90	9	1	9	1	n	0.96	25	1	25	1	n	1.00	12	0	12	0	n	1.00	18	0	18	0	n	1.00	10	0	10	0	n	1.00	19	0	19	0	n	1.00	11	0	11	0	n	1.00	11	0	11	0	n	0.90	19	2	19	2	y	ENSMUSG00000059866.14	Tnip2	chr5	protein_coding	TNFAIP3 interacting protein 2
known_NIR_14833	chr5	34658341;34658893	34658802;34660881	-	34658341	34660881	cassetteExon	ENSMUST00000087737.10	known	0.05	0.5	10	1;0	10	n	0.00	0.0	19	0;0	19	n	0.02	0.5	28	1;0	28	n	0.10	1.0	9	1;1	9	n	0.06	1.5	25	2;1	25	n	0.04	0.5	12	1;0	12	n	0.05	1.0	18	2;0	18	n	0.05	0.5	10	1;0	10	n	0.00	0.0	19	0;0	19	n	0.00	0.0	11	0;0	11	n	0.00	0.0	11	0;0	11	n	0.10	2.0	19	2;2	19	y	ENSMUSG00000059866.14	Tnip2	chr5	protein_coding	TNFAIP3 interacting protein 2
known_NIR_14834	chr5	34700926	34708905	+	34683245	34708905	A5SS	ENSMUST00000067638.14	known	0.00	0	28	0	28	n	0.07	1	13	1	13	n	0.09	3	32	3	32	y	0.03	1	30	1	30	n	0.00	0	55	0	55	n	0.00	0	24	0	24	n	0.00	0	26	0	26	n	0.00	0	20	0	20	n	0.00	0	18	0	18	n	0.00	0	33	0	33	n	0.08	2	23	2	23	y	0.00	0	28	0	28	n	ENSMUSG00000054520.16	Sh3bp2	chr5	protein_coding	SH3-domain binding protein 2
known_NIR_14835	chr5	34731257;34755791	34755513;34758668	+	34731257	34758668	cassetteExon	ENSMUST00000114338.9	known	0.11	1.5	12	0;3	12	n	0.20	1.5	6	1;2	6	n	0.33	5.0	10	1;9	10	n	0.12	1.5	11	0;3	11	n	0.15	4.0	23	4;4	23	y	0.20	3.0	12	3;3	12	y	0.11	2.0	17	3;1	17	n	0.10	1.5	13	2;1	13	n	0.12	1.0	7	0;2	7	n	0.08	1.5	18	2;1	18	n	0.16	3.5	18	4;3	18	y	0.12	3.0	21	1;5	21	n	ENSMUSG00000029106.15	Add1	chr5	protein_coding	adducin 1 (alpha)
known_NIR_14836	chr5	34774251	34776694	+	34774158	34776694	A5SS	ENSMUST00000114338.9	known	0.07	2	27	2	27	y	0.12	3	22	3	22	y	0.06	3	45	3	45	y	0.11	7	56	7	56	y	0.07	5	64	5	64	y	0.00	0	27	0	27	n	0.14	7	42	7	42	y	0.13	2	13	2	13	y	0.00	0	32	0	32	n	0.13	8	55	8	55	y	0.11	4	31	4	31	y	0.11	5	40	5	40	y	ENSMUSG00000029106.15	Add1	chr5	protein_coding	adducin 1 (alpha)
known_NIR_14837	chr5	34777478;34778262	34778176;34782623	+	34777478	34782623	cassetteExon	ENSMUST00000114338.9	known	0.12	4.5	33	4;5	33	y	0.14	6.5	41	5;8	41	y	0.24	16.0	51	18;14	51	y	0.10	8.5	74	7;10	74	y	0.13	12.0	77	11;13	77	y	0.12	4.0	30	4;4	30	y	0.12	9.0	69	13;5	69	y	0.11	6.5	51	5;8	51	y	0.07	3.5	50	3;4	50	y	0.02	1.5	65	1;2	65	n	0.11	4.0	33	2;6	33	y	0.08	5.0	58	7;3	58	y	ENSMUSG00000029106.15	Add1	chr5	protein_coding	adducin 1 (alpha)
known_NIR_14838	chr5	34785857	34787814	+	34785857;34786516	34786480;34787814	ES	ENSMUST00000114338.9	known	1.00	46	0.0	46	0;0	n	0.97	32	1.0	32	1;1	n	0.98	53	1.0	53	1;1	n	0.96	52	2.0	52	1;3	n	0.99	70	0.5	70	1;0	n	0.93	37	3.0	37	4;2	y	0.94	59	4.0	59	6;2	y	1.00	33	0.0	33	0;0	n	0.94	32	2.0	32	2;2	y	0.98	74	1.5	74	1;2	n	1.00	38	0.0	38	0;0	n	1.00	54	0.0	54	0;0	n	ENSMUSG00000029106.15	Add1	chr5	protein_coding	adducin 1 (alpha)
known_NIR_14839	chr5	34791988	34792195	-	34792043	34792195	A3SS	ENSMUST00000001109.11	known	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.14	1	6	1	6	n	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.14	1	6	1	6	n	0.00	0	2	0	2	n	0.36	5	9	5	9	y	ENSMUSG00000001082.13	Mfsd10	chr5	protein_coding	major facilitator superfamily domain containing 10
known_NIR_14840	chr5	34793086	34793365	-	34793111	34793365	A3SS	ENSMUST00000001109.11	known	0.27	4	11	4	11	y	0.00	0	4	0	4	n	0.17	3	15	3	15	y	0.10	1	9	1	9	n	0.17	3	15	3	15	y	0.12	1	7	1	7	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.27	3	8	3	8	y	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	15	0	15	n	ENSMUSG00000001082.13	Mfsd10	chr5	protein_coding	major facilitator superfamily domain containing 10
known_NIR_14841	chr5	34793436	34793754	-	34793468	34793754	A3SS	ENSMUST00000001109.11	known	0.00	0	9	0	9	n	0.12	1	7	1	7	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.12	2	14	2	14	y	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	ENSMUSG00000001082.13	Mfsd10	chr5	protein_coding	major facilitator superfamily domain containing 10
known_NIR_14842	chr5	34794130	34794271	-	34794127	34794271	A3SS	ENSMUST00000001109.11	known	0.43	3	4	3	4	n	0.00	0	2	0	2	n	0.50	6	6	6	6	y	0.33	1	2	1	2	n	0.71	5	2	5	2	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.40	2	3	2	3	n	1.00	1	0	1	0	n	0.14	1	6	1	6	n	0.25	1	3	1	3	n	0.36	4	7	4	7	y	ENSMUSG00000001082.13	Mfsd10	chr5	protein_coding	major facilitator superfamily domain containing 10
known_NIR_14843	chr5	34798801	34801270	-	34798826	34801270	A3SS	ENSMUST00000041364.13	known	0.00	0	19	0	19	n	0.20	6	24	6	24	y	0.00	0	56	0	56	n	0.17	6	30	6	30	y	0.09	4	41	4	41	y	0.00	0	17	0	17	n	0.00	0	36	0	36	n	0.00	0	19	0	19	n	0.03	1	28	1	28	n	0.15	6	35	6	35	y	0.09	3	32	3	32	y	0.06	2	31	2	31	y	ENSMUSG00000036693.13	Nop14	chr5	protein_coding	NOP14 nucleolar protein
known_NIR_14844	chr5	35187434	35189215	+	35187434;35187965	35187812;35189215	ES	ENSMUST00000030984.14	known	0.57	2	1.5	2	3;0	n	0.67	4	2.0	4	0;4	n	-	-	-	-	-	-	0.77	12	3.5	12	2;5	y	0.60	3	2.0	3	1;3	n	0.50	2	2.0	2	2;2	n	0.00	0	1.5	0	2;1	n	0.57	2	1.5	2	1;2	n	0.40	1	1.5	1	1;2	n	0.80	18	4.5	18	6;3	y	0.50	3	3.0	3	3;3	n	0.50	4	4.0	4	2;6	y	ENSMUSG00000029101.17	Rgs12	chr5	protein_coding	regulator of G-protein signaling 12
known_NIR_14845	chr5	35199054	35199910	+	35199054;35199808	35199634;35199910	ES	ENSMUST00000030985.10	known	0.01	4	329.5	4	280;379	y	0.02	6	272.5	6	250;295	y	0.00	0	160.5	0	133;188	n	0.01	2	379.0	2	316;442	y	0.02	7	378.0	7	337;419	y	0.01	1	136.0	1	127;145	n	0.01	2	289.5	2	263;316	y	0.01	1	182.0	1	154;210	n	0.01	5	331.0	5	260;402	y	0.02	9	469.5	9	399;540	y	0.00	1	333.5	1	289;378	n	0.03	9	342.5	9	332;353	y	ENSMUSG00000029102.10	Hgfac	chr5	protein_coding	hepatocyte growth factor activator
known_NIR_14846	chr5	35202193	35202556	+	35202193	35202595	A3SS	ENSMUST00000030985.10	known	0.04	22	517	22	517	y	0.05	28	530	28	530	y	0.03	7	247	7	247	y	0.04	25	580	25	580	y	0.07	41	571	41	571	y	0.07	15	203	15	203	y	0.04	20	546	20	546	y	0.04	11	255	11	255	y	0.03	16	510	16	510	y	0.03	24	764	24	764	y	0.05	29	565	29	565	y	0.03	20	605	20	605	y	ENSMUSG00000029102.10	Hgfac	chr5	protein_coding	hepatocyte growth factor activator
known_NIR_14847	chr5	35259883	35260525	-	35259883	35262823	A5SS	ENSMUST00000030986.15	known	0.00	0	132	0	132	n	0.00	0	107	0	107	n	0.00	0	86	0	86	n	0.00	0	121	0	121	n	0.00	0	162	0	162	n	0.00	0	49	0	49	n	0.02	3	137	3	137	y	0.00	0	69	0	69	n	0.00	0	93	0	93	n	0.00	0	156	0	156	n	0.00	0	119	0	119	n	0.00	0	132	0	132	n	ENSMUSG00000029103.17	Lrpap1	chr5	protein_coding	low density lipoprotein receptor-related protein associated protein 1
known_NIR_14848	chr5	35740663	35741220	+	35740478	35741220	A5SS	ENSMUST00000068947.14	known	0.19	3	13	3	13	y	0.25	3	9	3	9	y	0.64	9	5	9	5	y	0.24	6	19	6	19	y	0.32	13	28	13	28	y	0.18	2	9	2	9	y	0.38	9	15	9	15	y	0.15	2	11	2	11	y	0.41	12	17	12	17	y	0.18	5	23	5	23	y	0.33	5	10	5	10	y	0.24	6	19	6	19	y	ENSMUSG00000029098.18	Acox3	chr5	protein_coding	acyl-Coenzyme A oxidase 3, pristanoyl
known_NIR_14849	chr5	35740940	35741220	+	35740478	35741220	A5SS	ENSMUST00000068947.14	known	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	19	0	19	n	0.03	1	28	1	28	n	0.00	0	9	0	9	n	0.06	1	15	1	15	n	0.15	2	11	2	11	y	0.00	0	17	0	17	n	0.00	0	23	0	23	n	0.00	0	10	0	10	n	0.10	2	19	2	19	y	ENSMUSG00000029098.18	Acox3	chr5	protein_coding	acyl-Coenzyme A oxidase 3, pristanoyl
known_NIR_14850	chr5	35741315	35745503	+	35741319	35745503	A5SS	ENSMUST00000068947.14	known	0.27	6	16	6	16	y	0.62	15	9	15	9	y	0.23	3	10	3	10	y	0.50	16	16	16	16	y	0.39	15	23	15	23	y	0.50	8	8	8	8	y	0.38	8	13	8	13	y	0.21	3	11	3	11	y	0.48	10	11	10	11	y	0.45	14	17	14	17	y	0.35	8	15	8	15	y	0.26	9	26	9	26	y	ENSMUSG00000029098.18	Acox3	chr5	protein_coding	acyl-Coenzyme A oxidase 3, pristanoyl
known_NIR_14851	chr5	35767166	35768832	+	35767166	35769359	A3SS	ENSMUST00000068947.14	known	0.00	0	26	0	26	n	0.00	0	19	0	19	n	0.06	1	16	1	16	n	0.08	3	36	3	36	y	0.02	1	40	1	40	n	0.10	2	19	2	19	y	0.00	0	31	0	31	n	0.00	0	10	0	10	n	0.00	0	23	0	23	n	0.06	3	46	3	46	y	0.00	0	44	0	44	n	0.00	0	38	0	38	n	ENSMUSG00000029098.18	Acox3	chr5	protein_coding	acyl-Coenzyme A oxidase 3, pristanoyl
known_NIR_14852	chr5	35767166	35771346	+	35767166	35769359	3pMXE	ENSMUST00000068947.14	known	0.00	0	26	0	26	n	0.10	2	19	2	19	y	0.00	0	16	0	16	n	0.00	0	36	0	36	n	0.00	0	40	0	40	n	0.00	0	19	0	19	n	0.00	0	31	0	31	n	0.00	0	10	0	10	n	0.00	0	23	0	23	n	0.00	0	46	0	46	n	0.00	0	44	0	44	n	0.00	0	38	0	38	n	ENSMUSG00000029098.18	Acox3	chr5	protein_coding	acyl-Coenzyme A oxidase 3, pristanoyl
known_NIR_14853	chr5	35819608	35821307	-	35812936	35821307	A3SS	ENSMUST00000087629.10	known	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.11	1	8	1	8	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.20	1	4	1	4	n	0.24	6	19	6	19	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	2	0	2	0	n	0.00	0	3	0	3	n	ENSMUSG00000029096.16	Htra3	chr5	protein_coding	HtrA serine peptidase 3
known_NIR_14854	chr5	35985526	35990397	+	35985526;35989086	35989030;35990397	ES	ENSMUST00000101280.10	known	0.78	9	2.5	9	2;3	y	0.89	4	0.5	4	1;0	n	1.00	1	0.0	1	0;0	n	0.91	5	0.5	5	1;0	n	0.89	8	1.0	8	2;0	n	1.00	1	0.0	1	0;0	n	0.56	9	7.0	9	7;7	y	1.00	2	0.0	2	0;0	n	1.00	4	0.0	4	0;0	n	0.83	5	1.0	5	1;1	n	0.67	2	1.0	2	2;0	n	1.00	5	0.0	5	0;0	n	ENSMUSG00000029095.18	Ablim2	chr5	protein_coding	actin-binding LIM protein 2
known_NIR_14855	chr5	35998745	36006148	+	35998745;36000610	36000512;36006148	ES	ENSMUST00000101280.10	known	0.67	6	3.0	6	3;3	y	0.29	1	2.5	1	2;3	n	1.00	3	0.0	3	0;0	n	0.67	1	0.5	1	0;1	n	0.77	5	1.5	5	1;2	n	1.00	1	0.0	1	0;0	n	0.05	1	18.5	1	20;17	n	0.67	2	1.0	2	0;2	n	1.00	1	0.0	1	0;0	n	0.40	1	1.5	1	0;3	n	0.33	1	2.0	1	2;2	n	0.80	2	0.5	2	1;0	n	ENSMUSG00000029095.18	Ablim2	chr5	protein_coding	actin-binding LIM protein 2
known_NIR_14856	chr5	35998745;36006249	36006148;36014472	+	35998745	36014472	cassetteExon	ENSMUST00000151636.8	known	0.58	5.5	4	6;5	4	y	0.40	2.0	3	1;3	3	n	0.33	1.5	3	3;0	3	n	0.60	3.0	2	1;5	2	n	0.78	7.0	2	5;9	2	y	0.60	1.5	1	1;2	1	n	0.60	1.5	1	1;2	1	n	0.50	2.0	2	2;2	2	n	1.00	1.5	0	1;2	0	n	0.64	3.5	2	1;6	2	n	1.00	1.5	0	1;2	0	n	1.00	2.0	0	2;2	0	n	ENSMUSG00000029095.18	Ablim2	chr5	protein_coding	actin-binding LIM protein 2
known_NIR_14857	chr5	36006249;36006913	36006860;36014472	+	36006249	36014472	cassetteExon	ENSMUST00000101280.10	known	0.00	0.0	5	0;0	5	n	0.14	0.5	3	1;0	3	n	-	-	-	-	-	-	0.33	2.5	5	2;3	5	y	0.14	1.5	9	3;0	9	n	0.33	1.0	2	1;1	2	n	0.75	6.0	2	7;5	2	y	0.00	0.0	2	0;0	2	n	0.56	2.5	2	2;3	2	n	0.08	0.5	6	0;1	6	n	0.60	3.0	2	4;2	2	n	0.33	1.0	2	1;1	2	n	ENSMUSG00000029095.18	Ablim2	chr5	protein_coding	actin-binding LIM protein 2
known_NIR_14858	chr5	36015308	36031977	+	36015308	36024049	3pMXE	ENSMUST00000153025.2	known	0.50	2	2	2	2	n	0.67	2	1	2	1	n	0.20	1	4	1	4	n	0.67	2	1	2	1	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.27	3	8	3	8	y	0.50	2	2	2	2	n	0.00	0	5	0	5	n	0.67	2	1	2	1	n	0.67	2	1	2	1	n	0.00	0	2	0	2	n	ENSMUSG00000029095.18	Ablim2	chr5	protein_coding	actin-binding LIM protein 2
known_NIR_14859	chr5	3608693	3609138	+	3608693	3609097	A3SS	ENSMUST00000197082.5	known	0.07	1	13	1	13	n	0.12	1	7	1	7	n	0.07	2	25	2	25	y	0.11	2	16	2	16	y	0.04	1	22	1	22	n	0.00	0	5	0	5	n	0.00	0	22	0	22	n	0.23	3	10	3	10	y	0.08	1	12	1	12	n	0.00	0	21	0	21	n	0.05	1	21	1	21	n	0.00	0	19	0	19	n	ENSMUSG00000058503.12	Fam133b	chr5	protein_coding	family with sequence similarity 133, member B
known_NIR_14860	chr5	3641815	3645966	-	3641815;3645445	3645255;3645966	ES	ENSMUST00000042753.14	known	0.00	0	9.5	0	10;9	n	0.00	0	7.5	0	7;8	n	0.00	0	17.0	0	26;8	n	0.00	0	17.0	0	14;20	n	0.00	0	13.0	0	16;10	n	0.00	0	5.0	0	5;5	n	0.04	1	21.5	1	30;13	n	0.00	0	9.5	0	14;5	n	0.29	4	10.0	4	13;7	y	0.00	0	12.5	0	14;11	n	0.12	1	7.0	1	11;3	n	0.00	0	17.5	0	19;16	n	ENSMUSG00000040302.18	Rbm48	chr5	protein_coding	RNA binding motif protein 48
known_NIR_14861	chr5	3642445	3645255	-	3641815	3645255	A3SS	ENSMUST00000042753.14	known	0.17	2	10	2	10	y	0.00	0	7	0	7	n	0.00	0	26	0	26	n	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.00	0	5	0	5	n	0.00	0	30	0	30	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.05	1	19	1	19	n	ENSMUSG00000040302.18	Rbm48	chr5	protein_coding	RNA binding motif protein 48
known_NIR_14862	chr5	3646366	3653232	+	3646517	3653232	A5SS	ENSMUST00000006061.13	known	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.19	3	13	3	13	y	0.04	1	25	1	25	n	0.05	2	36	2	36	y	0.10	1	9	1	9	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	28	0	28	n	0.00	0	6	0	6	n	0.05	1	19	1	19	n	ENSMUSG00000005907.15	Pex1	chr5	protein_coding	peroxisomal biogenesis factor 1
known_NIR_14863	chr5	3656410	3657667	+	3656410	3662881	A3SS	ENSMUST00000126545.2	known	1.00	21	0	21	0	n	1.00	18	0	18	0	n	1.00	29	0	29	0	n	1.00	51	0	51	0	n	1.00	42	0	42	0	n	1.00	17	0	17	0	n	1.00	40	0	40	0	n	1.00	29	0	29	0	n	1.00	23	0	23	0	n	0.96	44	2	44	2	y	1.00	22	0	22	0	n	1.00	41	0	41	0	n	ENSMUSG00000005907.15	Pex1	chr5	protein_coding	peroxisomal biogenesis factor 1
known_NIR_14864	chr5	36652620	36664922	-	36652620	36662369	A5SS&ES	ENSMUST00000136189.8	known	0.00	0	26	0	26	n	0.00	0	13	0	13	n	0.00	0	37	0	37	n	0.00	0	35	0	35	n	0.00	0	46	0	46	n	0.00	0	17	0	17	n	0.04	1	25	1	25	n	0.00	0	26	0	26	n	0.00	0	19	0	19	n	0.00	0	37	0	37	n	0.00	0	24	0	24	n	0.06	2	30	2	30	y	ENSMUSG00000029192.18	Tbc1d14	chr5	protein_coding	TBC1 domain family, member 14
known_NIR_14865	chr5	36652620	36664922	-	36652620;36662478	36662369;36664922	ES	ENSMUST00000146430.8	known	0.00	0	26.0	0	26;26	n	0.00	0	14.0	0	13;15	n	0.00	0	34.5	0	37;32	n	0.00	0	26.0	0	35;17	n	0.00	0	45.0	0	46;44	n	0.00	0	18.0	0	17;19	n	0.04	1	26.0	1	25;27	n	0.00	0	23.5	0	26;21	n	0.00	0	24.0	0	19;29	n	0.00	0	33.5	0	37;30	n	0.00	0	20.0	0	24;16	n	0.07	2	26.5	2	30;23	y	ENSMUSG00000029192.18	Tbc1d14	chr5	protein_coding	TBC1 domain family, member 14
known_NIR_14866	chr5	36682392	36687767	-	36682392	36700521	A5SS	ENSMUST00000146430.8	known	0.38	5	8	5	8	y	0.00	0	9	0	9	n	0.14	3	18	3	18	y	0.00	0	23	0	23	n	0.13	3	20	3	20	y	0.15	2	11	2	11	y	0.15	3	17	3	17	y	0.07	1	13	1	13	n	0.22	4	14	4	14	y	0.15	4	22	4	22	y	0.05	1	20	1	20	n	0.15	4	22	4	22	y	ENSMUSG00000029192.18	Tbc1d14	chr5	protein_coding	TBC1 domain family, member 14
known_NIR_14867	chr5	36729381	36739699	-	36729381	36739031	5pMXE	ENSMUST00000136189.8	known	0.12	1	7	1	7	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.29	4	10	4	10	y	0.28	5	13	5	13	y	0.29	2	5	2	5	n	0.28	5	13	5	13	y	0.50	2	2	2	2	n	1.00	1	0	1	0	n	0.38	5	8	5	8	y	0.50	4	4	4	4	n	0.38	5	8	5	8	y	ENSMUSG00000029192.18	Tbc1d14	chr5	protein_coding	TBC1 domain family, member 14
known_NIR_14868	chr5	36760147	36765282	-	36760147;36761952	36761855;36765282	ES	ENSMUST00000031091.13	known	0.07	2	28.0	2	39;17	y	0.17	6	30.0	6	26;34	y	0.18	7	31.5	7	31;32	y	0.15	7	40.0	7	47;33	y	0.15	10	57.5	10	51;64	y	0.08	2	24.0	2	22;26	y	0.05	3	55.5	3	55;56	y	0.18	6	27.5	6	25;30	y	0.11	5	38.5	5	39;38	y	0.19	16	69.0	16	65;73	y	0.23	11	36.5	11	37;36	y	0.20	15	60.5	15	62;59	y	ENSMUSG00000029190.20	D5Ertd579e	chr5	protein_coding	DNA segment, Chr 5, ERATO Doi 579, expressed
known_NIR_14869	chr5	36967702	36970291	-	36967752	36970291	A3SS	ENSMUST00000031002.10	known	0.02	2	116	2	116	y	0.01	1	152	1	152	n	0.00	0	136	0	136	n	0.00	0	106	0	106	n	0.01	1	138	1	138	n	0.00	0	94	0	94	n	0.01	1	137	1	137	n	0.00	0	77	0	77	n	0.00	0	81	0	81	n	0.02	3	141	3	141	y	0.01	1	120	1	120	n	0.03	3	103	3	103	y	ENSMUSG00000029119.10	Man2b2	chr5	protein_coding	mannosidase 2, alpha B2
known_NIR_14870	chr5	3744893	3750356	-	3744875	3750356	A3SS	ENSMUST00000043551.11	known	1.00	17	0	17	0	n	0.83	10	2	10	2	y	0.90	37	4	37	4	y	0.84	16	3	16	3	y	0.85	22	4	22	4	y	0.88	15	2	15	2	y	0.77	17	5	17	5	y	0.80	16	4	16	4	y	0.75	9	3	9	3	y	0.69	22	10	22	10	y	0.71	17	7	17	7	y	0.72	18	7	18	7	y	ENSMUSG00000040351.12	Ankib1	chr5	protein_coding	ankyrin repeat and IBR domain containing 1
known_NIR_14871	chr5	38196843	38262222	+	38196843;38249924	38249857;38262222	ES	ENSMUST00000114126.9	known	0.00	0	50.0	0	51;49	n	0.03	1	33.5	1	30;37	n	0.09	9	93.0	9	92;94	y	0.00	0	62.5	0	64;61	n	0.00	0	100.0	0	96;104	n	0.06	4	62.5	4	54;71	y	0.06	4	61.0	4	65;57	y	0.00	0	68.5	0	72;65	n	0.00	0	36.0	0	36;36	n	0.05	2	39.5	2	37;42	y	0.00	0	34.0	0	27;41	n	0.00	0	51.0	0	43;59	n	ENSMUSG00000029125.15	Stx18	chr5	protein_coding	syntaxin 18
known_NIR_14872	chr5	38233963	38249857	+	38196843	38249857	A5SS	ENSMUST00000114126.9	known	0.02	1	51	1	51	n	0.03	1	30	1	30	n	0.04	4	92	4	92	y	0.02	1	64	1	64	n	0.03	3	96	3	96	y	0.08	5	54	5	54	y	0.00	0	65	0	65	n	0.05	4	72	4	72	y	0.00	0	36	0	36	n	0.00	0	37	0	37	n	0.07	2	27	2	27	y	0.00	0	43	0	43	n	ENSMUSG00000029125.15	Stx18	chr5	protein_coding	syntaxin 18
known_NIR_14873	chr5	38268784	38273429	+	38264236	38273429	A5SS	ENSMUST00000114126.9	known	0.02	1	58	1	58	n	0.07	3	42	3	42	y	0.00	0	116	0	116	n	0.02	1	48	1	48	n	0.00	0	77	0	77	n	0.01	1	68	1	68	n	0.04	3	66	3	66	y	0.07	4	55	4	55	y	0.07	3	39	3	39	y	0.00	0	55	0	55	n	0.03	1	37	1	37	n	0.06	3	51	3	51	y	ENSMUSG00000029125.15	Stx18	chr5	protein_coding	syntaxin 18
known_NIR_14874	chr5	38292646	38293699	+	38292646	38293607	A3SS	ENSMUST00000114126.9	known	0.06	4	62	4	62	y	0.11	7	59	7	59	y	0.11	14	114	14	114	y	0.00	0	35	0	35	n	0.09	6	62	6	62	y	0.13	10	66	10	66	y	0.14	10	62	10	62	y	0.06	4	65	4	65	y	0.00	0	48	0	48	n	0.12	7	52	7	52	y	0.18	7	31	7	31	y	0.00	0	29	0	29	n	ENSMUSG00000029125.15	Stx18	chr5	protein_coding	syntaxin 18
known_NIR_14875	chr5	38377979;38380571	38380478;38381971	+	38377979	38381971	cassetteExon	ENSMUST00000087514.9	known	0.02	0.5	21	0;1	21	n	0.20	2.5	10	4;1	10	n	0.08	1.5	18	3;0	18	n	0.04	0.5	11	0;1	11	n	0.06	1.5	23	2;1	23	n	0.43	1.5	2	2;1	2	n	0.04	0.5	13	1;0	13	n	0.20	1.0	4	1;1	4	n	0.00	0.0	14	0;0	14	n	0.02	0.5	24	1;0	24	n	0.08	2.0	22	4;0	22	n	0.20	2.0	8	2;2	8	y	ENSMUSG00000067367.10	Lyar	chr5	protein_coding	Ly1 antibody reactive clone
known_NIR_14876	chr5	38377979;38380575	38380478;38381971	+	38377979	38381971	cassetteExon	ENSMUST00000087514.9	known	0.00	0.0	21	0;0	21	n	0.23	3.0	10	4;2	10	y	0.12	2.5	18	3;2	18	y	0.00	0.0	11	0;0	11	n	0.06	1.5	23	2;1	23	n	0.33	1.0	2	2;0	2	n	0.16	2.5	13	1;4	13	n	0.11	0.5	4	1;0	4	n	0.07	1.0	14	0;2	14	n	0.09	2.5	24	1;4	24	n	0.14	3.5	22	4;3	22	y	0.11	1.0	8	2;0	8	n	ENSMUSG00000067367.10	Lyar	chr5	protein_coding	Ly1 antibody reactive clone
known_NIR_14877	chr5	38382141	38385199	+	38382141	38383233	3pMXE	ENSMUST00000152066.8	known	0.11	3	24	3	24	y	0.17	5	24	5	24	y	0.02	1	44	1	44	n	0.04	1	24	1	24	n	0.16	8	43	8	43	y	0.00	0	10	0	10	n	0.00	0	42	0	42	n	0.05	1	21	1	21	n	0.08	2	24	2	24	y	0.00	0	39	0	39	n	0.03	1	31	1	31	n	0.09	2	20	2	20	y	ENSMUSG00000067367.10	Lyar	chr5	protein_coding	Ly1 antibody reactive clone
known_NIR_14878	chr5	38382141	38385199	+	38382141;38383347	38383233;38385199	ES	ENSMUST00000087514.9	known	0.09	3	31.0	3	24;38	y	0.15	5	28.0	5	24;32	y	0.03	1	32.0	1	44;20	n	0.04	1	25.5	1	24;27	n	0.18	8	36.5	8	43;30	y	0.00	0	14.5	0	10;19	n	0.00	0	41.0	0	42;40	n	0.05	1	18.5	1	21;16	n	0.09	2	20.5	2	24;17	y	0.00	0	38.0	0	39;37	n	0.03	1	32.5	1	31;34	n	0.07	2	25.5	2	20;31	y	ENSMUSG00000067367.10	Lyar	chr5	protein_coding	Ly1 antibody reactive clone
known_NIR_14879	chr5	38424628	38425042	+	38424628	38426403	A3SS	ENSMUST00000087511.10	known	0.31	35	77	35	77	y	0.35	35	66	35	66	y	0.51	91	87	91	87	y	0.24	24	75	24	75	y	0.38	47	77	47	77	y	0.47	49	55	49	55	y	0.27	44	117	44	117	y	0.39	27	42	27	42	y	0.35	29	55	29	55	y	0.31	43	95	43	95	y	0.38	45	75	45	75	y	0.28	40	101	40	101	y	ENSMUSG00000067365.12	Tmem128	chr5	protein_coding	transmembrane protein 128
known_NIR_14880	chr5	3853483	3856465	+	3853483	3856419	A3SS	ENSMUST00000199845.5	known	0.33	2	4	2	4	n	1.00	1	0	1	0	n	0.42	5	7	5	7	y	0.55	6	5	6	5	y	0.42	8	11	8	11	y	0.00	0	7	0	7	n	0.73	8	3	8	3	y	0.45	5	6	5	6	y	0.33	3	6	3	6	n	0.50	6	6	6	6	y	0.00	0	3	0	3	n	0.31	4	9	4	9	y	ENSMUSG00000000600.16	Krit1	chr5	protein_coding	KRIT1, ankyrin repeat containing
known_NIR_14881	chr5	38549167	38556045	-	38549167	38593883	A5SS	ENSMUST00000005238.13	known	0.98	49	1	49	1	n	1.00	42	0	42	0	n	0.81	25	6	25	6	y	1.00	70	0	70	0	n	0.95	57	3	57	3	y	0.93	28	2	28	2	y	0.97	66	2	66	2	y	0.90	26	3	26	3	y	1.00	55	0	55	0	n	0.91	87	9	87	9	y	1.00	45	0	45	0	n	0.96	69	3	69	3	y	ENSMUSG00000005107.14	Slc2a9	chr5	protein_coding	solute carrier family 2 (facilitated glucose transporter), member 9
known_NIR_14882	chr5	38549167	38574518	-	38549167;38556232	38556045;38574518	ES	ENSMUST00000067886.12	known	0.00	0	43.5	0	49;38	n	0.00	0	39.0	0	42;36	n	0.00	0	19.5	0	25;14	n	0.00	0	55.0	0	70;40	n	0.00	0	50.0	0	57;43	n	0.08	2	23.0	2	28;18	y	0.00	0	58.5	0	66;51	n	0.00	0	28.0	0	26;30	n	0.06	3	45.5	3	55;36	y	0.00	0	70.0	0	87;53	n	0.03	1	36.0	1	45;27	n	0.00	0	62.5	0	69;56	n	ENSMUSG00000005107.14	Slc2a9	chr5	protein_coding	solute carrier family 2 (facilitated glucose transporter), member 9
known_NIR_14883	chr5	38549167;38574650	38574518;38593883	-	38549167	38593883	cassetteExon	ENSMUST00000005238.13	known	0.95	20.5	1	0;41	1	n	1.00	20.0	0	0;40	0	n	0.60	9.0	6	0;18	6	n	1.00	26.0	0	0;52	0	n	0.93	39.0	3	0;78	3	n	0.84	10.5	2	2;19	2	y	0.92	23.0	2	0;46	2	n	0.79	11.5	3	0;23	3	n	1.00	18.5	0	3;34	0	n	0.78	31.0	9	0;62	9	n	1.00	16.0	0	1;31	0	n	0.91	30.5	3	0;61	3	n	ENSMUSG00000005107.14	Slc2a9	chr5	protein_coding	solute carrier family 2 (facilitated glucose transporter), member 9
known_NIR_14884	chr5	38633990	38634738	-	38610605	38634738	A3SS	ENSMUST00000067886.12	known	0.16	8	41	8	41	y	0.18	6	27	6	27	y	0.28	7	18	7	18	y	0.16	10	51	10	51	y	0.19	10	43	10	43	y	0.27	6	16	6	16	y	0.26	15	43	15	43	y	0.06	2	29	2	29	y	0.29	12	30	12	30	y	0.16	12	64	12	64	y	0.22	11	38	11	38	y	0.15	9	53	9	53	y	ENSMUSG00000005107.14	Slc2a9	chr5	protein_coding	solute carrier family 2 (facilitated glucose transporter), member 9
known_NIR_14885	chr5	38634836	38640648	-	38634836	38637382	5pMXE	ENSMUST00000067886.12	known	0.00	0	10	0	10	n	0.20	1	4	1	4	n	0.00	0	12	0	12	n	0.50	4	4	4	4	n	0.16	3	16	3	16	y	0.25	2	6	2	6	n	0.29	5	12	5	12	y	0.33	3	6	3	6	n	0.00	0	3	0	3	n	0.27	3	8	3	8	y	0.00	0	7	0	7	n	0.17	1	5	1	5	n	ENSMUSG00000005107.14	Slc2a9	chr5	protein_coding	solute carrier family 2 (facilitated glucose transporter), member 9
known_NIR_14886	chr5	38634836	38640648	-	38634836	38640660	A5SS	ENSMUST00000067872.12	known	0.00	0	57	0	57	n	0.03	1	38	1	38	n	0.00	0	13	0	13	n	0.05	4	82	4	82	y	0.04	3	74	3	74	y	0.07	2	25	2	25	y	0.08	5	58	5	58	y	0.11	3	25	3	25	y	0.00	0	47	0	47	n	0.04	3	77	3	77	y	0.00	0	57	0	57	n	0.01	1	101	1	101	n	ENSMUSG00000005107.14	Slc2a9	chr5	protein_coding	solute carrier family 2 (facilitated glucose transporter), member 9
known_NIR_14887	chr5	38634836	38640660	-	38634836	38637382	5pMXE	ENSMUST00000067886.12	known	0.85	57	10	57	10	y	0.90	38	4	38	4	y	0.52	13	12	13	12	y	0.95	82	4	82	4	y	0.82	74	16	74	16	y	0.81	25	6	25	6	y	0.83	58	12	58	12	y	0.81	25	6	25	6	y	0.94	47	3	47	3	y	0.91	77	8	77	8	y	0.89	57	7	57	7	y	0.95	101	5	101	5	y	ENSMUSG00000005107.14	Slc2a9	chr5	protein_coding	solute carrier family 2 (facilitated glucose transporter), member 9
known_NIR_14888	chr5	38687012	38687115	-	38687012	38687280	A5SS	ENSMUST00000005234.13	known	0.01	1	77	1	77	n	0.00	0	62	0	62	n	0.01	2	137	2	137	y	0.01	1	70	1	70	n	0.00	0	120	0	120	n	0.00	0	76	0	76	n	0.00	0	123	0	123	n	0.01	1	79	1	79	n	0.01	1	69	1	69	n	0.01	1	116	1	116	n	0.00	0	67	0	67	n	0.01	1	113	1	113	n	ENSMUSG00000005103.13	Wdr1	chr5	protein_coding	WD repeat domain 1
known_NIR_14889	chr5	38718539	38718859	-	38718544	38718859	A3SS	ENSMUST00000005234.13	known	0.00	0	26	0	26	n	0.12	3	21	3	21	y	0.01	1	83	1	83	n	0.00	0	35	0	35	n	0.06	3	50	3	50	y	0.05	2	41	2	41	y	0.02	1	44	1	44	n	0.00	0	46	0	46	n	0.00	0	28	0	28	n	0.02	1	53	1	53	n	0.00	0	23	0	23	n	0.04	2	49	2	49	y	ENSMUSG00000005103.13	Wdr1	chr5	protein_coding	WD repeat domain 1
known_NIR_14890	chr5	3882226	3890874	+	3882226	3886778	A3SS&ES	ENSMUST00000200386.5	known	0.00	0	47	0	47	n	0.07	3	38	3	38	y	0.06	3	50	3	50	y	0.00	0	42	0	42	n	0.00	0	49	0	49	n	0.09	3	29	3	29	y	0.04	2	43	2	43	y	0.04	1	25	1	25	n	0.06	3	45	3	45	y	0.00	0	44	0	44	n	0.00	0	35	0	35	n	0.14	6	38	6	38	y	ENSMUSG00000000600.16	Krit1	chr5	protein_coding	KRIT1, ankyrin repeat containing
known_NIR_14891	chr5	3882226	3890874	+	3882226;3886894	3886778;3890874	ES	ENSMUST00000199845.5	known	0.00	0	47.0	0	47;47	n	0.07	3	43.0	3	38;48	y	0.06	3	47.0	3	50;44	y	0.00	0	37.5	0	42;33	n	0.00	0	51.5	0	49;54	n	0.09	3	29.5	3	29;30	y	0.04	2	47.5	2	43;52	y	0.04	1	27.5	1	25;30	n	0.07	3	40.0	3	45;35	y	0.00	0	46.0	0	44;48	n	0.00	0	38.0	0	35;41	n	0.12	6	43.0	6	38;48	y	ENSMUSG00000000600.16	Krit1	chr5	protein_coding	KRIT1, ankyrin repeat containing
known_NIR_14892	chr5	41782431	41790516	-	41783205	41790516	A3SS	ENSMUST00000031011.12	known	0.00	0	43	0	43	n	0.14	8	48	8	48	y	0.10	10	90	10	90	y	0.06	3	45	3	45	y	0.04	3	70	3	70	y	0.19	9	38	9	38	y	0.10	6	54	6	54	y	0.06	3	46	3	46	y	0.04	2	50	2	50	y	0.01	1	66	1	66	n	0.05	2	36	2	36	y	0.04	3	65	3	65	y	ENSMUSG00000029128.13	Rab28	chr5	protein_coding	RAB28, member RAS oncogene family
known_NIR_14893	chr5	41782431	41790516	-	41784424	41790516	A3SS&ES	ENSMUST00000201422.4	known	0.00	0	6	0	6	n	1.00	8	0	8	0	n	1.00	10	0	10	0	n	0.30	3	7	3	7	y	0.43	3	4	3	4	n	0.90	9	1	9	1	n	0.22	6	21	6	21	y	1.00	3	0	3	0	n	0.50	2	2	2	2	n	1.00	1	0	1	0	n	1.00	2	0	2	0	n	0.75	3	1	3	1	n	ENSMUSG00000029128.13	Rab28	chr5	protein_coding	RAB28, member RAS oncogene family
known_NIR_14894	chr5	41783205	41790516	-	41783205	41784330	5pMXE	ENSMUST00000200702.2	known	1.00	43	0	43	0	n	0.98	48	1	48	1	n	0.98	90	2	90	2	y	0.90	45	5	45	5	y	0.96	70	3	70	3	y	0.95	38	2	38	2	y	0.84	54	10	54	10	y	1.00	46	0	46	0	n	0.96	50	2	50	2	y	0.99	66	1	66	1	n	0.97	36	1	36	1	n	0.98	65	1	65	1	n	ENSMUSG00000029128.13	Rab28	chr5	protein_coding	RAB28, member RAS oncogene family
known_NIR_14895	chr5	41783205	41790516	-	41783205;41784424	41784330;41790516	ES	ENSMUST00000201422.4	known	0.93	43	3.0	43	0;6	n	0.99	48	0.5	48	1;0	n	0.99	90	1.0	90	2;0	n	0.88	45	6.0	45	5;7	y	0.95	70	3.5	70	3;4	y	0.96	38	1.5	38	2;1	n	0.78	54	15.5	54	10;21	y	1.00	46	0.0	46	0;0	n	0.96	50	2.0	50	2;2	y	0.99	66	0.5	66	1;0	n	0.99	36	0.5	36	1;0	n	0.98	65	1.0	65	1;1	n	ENSMUSG00000029128.13	Rab28	chr5	protein_coding	RAB28, member RAS oncogene family
known_NIR_14896	chr5	41946292	41951570	-	41946292;41949280	41949140;41951570	ES	ENSMUST00000050556.11	known	0.73	26	9.5	26	14;5	y	0.62	10	6.0	10	8;4	y	0.59	18	12.5	18	12;13	y	0.79	17	4.5	17	6;3	y	0.71	21	8.5	21	9;8	y	0.65	10	5.5	10	7;4	y	0.80	18	4.5	18	7;2	y	0.64	8	4.5	8	3;6	y	0.95	18	1.0	18	0;2	n	0.73	29	10.5	29	6;15	y	0.72	21	8.0	21	9;7	y	0.65	14	7.5	14	3;12	y	ENSMUSG00000061755.11	Bod1l	chr5	protein_coding	biorientation of chromosomes in cell division 1-like
known_NIR_14897	chr5	43394931	43401929	+	43394931;43395759	43395670;43401929	ES	ENSMUST00000166713.9	known	0.58	11	8.0	11	11;5	y	0.44	9	11.5	9	11;12	y	0.55	13	10.5	13	11;10	y	0.48	20	22.0	20	19;25	y	0.59	12	8.5	12	10;7	y	0.67	5	2.5	5	2;3	y	0.73	16	6.0	16	8;4	y	0.46	11	13.0	11	12;14	y	0.62	12	7.5	12	9;6	y	0.49	11	11.5	11	10;13	y	0.62	12	7.5	12	4;11	y	0.64	17	9.5	17	10;9	y	ENSMUSG00000039782.16	Cpeb2	chr5	protein_coding	cytoplasmic polyadenylation element binding protein 2
known_NIR_14898	chr5	43394931	43401929	+	43395759	43401929	A5SS&ES	ENSMUST00000127599.3	known	0.69	11	5	11	5	y	0.43	9	12	9	12	y	0.57	13	10	13	10	y	0.44	20	25	20	25	y	0.63	12	7	12	7	y	0.62	5	3	5	3	n	0.80	16	4	16	4	y	0.44	11	14	11	14	y	0.67	12	6	12	6	y	0.46	11	13	11	13	y	0.52	12	11	12	11	y	0.65	17	9	17	9	y	ENSMUSG00000039782.16	Cpeb2	chr5	protein_coding	cytoplasmic polyadenylation element binding protein 2
known_NIR_14899	chr5	43394940	43395670	+	43394931	43395670	A5SS	ENSMUST00000166713.9	known	0.08	1	11	1	11	n	0.08	1	11	1	11	n	0.00	0	11	0	11	n	0.05	1	19	1	19	n	0.17	2	10	2	10	y	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.10	1	9	1	9	n	0.00	0	10	0	10	n	0.20	1	4	1	4	n	0.09	1	10	1	10	n	ENSMUSG00000039782.16	Cpeb2	chr5	protein_coding	cytoplasmic polyadenylation element binding protein 2
known_NIR_14900	chr5	43419127	43434774	+	43419127;43426235	43426212;43434774	ES	ENSMUST00000166713.9	known	0.67	21	10.5	21	11;10	y	0.81	13	3.0	13	4;2	y	0.93	14	1.0	14	0;2	n	0.60	25	17.0	25	18;16	y	0.65	24	13.0	24	14;12	y	0.84	8	1.5	8	0;3	n	0.42	9	12.5	9	13;12	y	0.54	15	13.0	15	12;14	y	0.81	15	3.5	15	3;4	y	0.92	30	2.5	30	4;1	n	0.55	11	9.0	11	7;11	y	0.58	16	11.5	16	10;13	y	ENSMUSG00000039782.16	Cpeb2	chr5	protein_coding	cytoplasmic polyadenylation element binding protein 2
known_NIR_14901	chr5	43918194	43920159	-	43918197	43920159	A3SS	ENSMUST00000119523.8	known	0.00	0	33	0	33	n	0.07	2	27	2	27	y	0.04	3	75	3	75	y	0.00	0	48	0	48	n	0.00	0	60	0	60	n	0.05	2	37	2	37	y	0.00	0	68	0	68	n	0.00	0	47	0	47	n	0.00	0	38	0	38	n	0.00	0	64	0	64	n	0.02	1	47	1	47	n	0.00	0	58	0	58	n	ENSMUSG00000039753.17	Fbxl5	chr5	protein_coding	F-box and leucine-rich repeat protein 5
known_NIR_14902	chr5	43930872	43939307	-	43931001	43939307	A3SS	ENSMUST00000196483.5	known	0.00	0	19	0	19	n	0.00	0	16	0	16	n	0.00	0	38	0	38	n	0.00	0	47	0	47	n	0.00	0	39	0	39	n	0.05	2	37	2	37	y	0.00	0	39	0	39	n	0.00	0	29	0	29	n	0.00	0	21	0	21	n	0.00	0	47	0	47	n	0.00	0	29	0	29	n	0.00	0	32	0	32	n	ENSMUSG00000039753.17	Fbxl5	chr5	protein_coding	F-box and leucine-rich repeat protein 5
known_NIR_14903	chr5	44351752;44356720	44356655;44361552	-	44351752	44361552	cassetteExon	ENSMUST00000055128.12	known	0.10	5.5	48	4;7	48	y	0.08	3.0	34	4;2	34	y	0.04	4.0	104	6;2	104	y	0.04	4.0	108	1;7	108	n	0.05	5.5	106	6;5	106	y	0.04	2.0	48	4;0	48	n	0.07	7.0	91	4;10	91	y	0.00	0.0	53	0;0	53	n	0.06	3.5	55	3;4	55	y	0.06	5.5	88	8;3	88	y	0.05	2.0	39	2;2	39	y	0.07	7.5	104	9;6	104	y	ENSMUSG00000046985.12	Tapt1	chr5	protein_coding	transmembrane anterior posterior transformation 1
known_NIR_14904	chr5	44361670	44383756	-	44361670	44375446	5pMXE	ENSMUST00000197266.5	known	0.00	0	54	0	54	n	0.00	0	40	0	40	n	0.02	2	105	2	105	y	0.00	0	102	0	102	n	0.00	0	139	0	139	n	0.04	2	47	2	47	y	0.00	0	108	0	108	n	0.01	1	67	1	67	n	0.00	0	55	0	55	n	0.00	0	96	0	96	n	0.03	2	59	2	59	y	0.00	0	108	0	108	n	ENSMUSG00000046985.12	Tapt1	chr5	protein_coding	transmembrane anterior posterior transformation 1
known_NIR_14905	chr5	44361670	44383756	-	44361670;44375576	44375446;44383756	ES	ENSMUST00000055128.12	known	0.00	0	46.5	0	54;39	n	0.00	0	33.5	0	40;27	n	0.02	2	82.5	2	105;60	y	0.00	0	88.5	0	102;75	n	0.00	0	112.0	0	139;85	n	0.05	2	40.0	2	47;33	y	0.00	0	90.5	0	108;73	n	0.02	1	53.0	1	67;39	n	0.00	0	41.0	0	55;27	n	0.00	0	84.5	0	96;73	n	0.04	2	51.0	2	59;43	y	0.00	0	87.0	0	108;66	n	ENSMUSG00000046985.12	Tapt1	chr5	protein_coding	transmembrane anterior posterior transformation 1
known_NIR_14906	chr5	44361670	44383756	-	44375576	44383756	3pMXE	ENSMUST00000196151.2	known	0.00	0	39	0	39	n	0.00	0	27	0	27	n	0.03	2	60	2	60	y	0.00	0	75	0	75	n	0.00	0	85	0	85	n	0.06	2	33	2	33	y	0.00	0	73	0	73	n	0.03	1	39	1	39	n	0.00	0	27	0	27	n	0.00	0	73	0	73	n	0.04	2	43	2	43	y	0.00	0	66	0	66	n	ENSMUSG00000046985.12	Tapt1	chr5	protein_coding	transmembrane anterior posterior transformation 1
known_NIR_14907	chr5	45600919	45601854	-	45600919	45601989	A5SS	ENSMUST00000197946.5	known	0.01	7	1000	7	1000	y	0.00	2	846	2	846	y	0.02	8	442	8	442	y	0.01	12	1061	12	1061	y	0.01	13	1185	13	1185	y	0.02	8	388	8	388	y	0.01	13	1155	13	1155	y	0.02	10	478	10	478	y	0.01	11	1138	11	1138	y	0.01	14	1608	14	1608	y	0.01	18	1319	18	1319	y	0.01	19	1806	19	1806	y	ENSMUSG00000015806.13	Qdpr	chr5	protein_coding	quinoid dihydropteridine reductase
known_NIR_14908	chr5	45600919	45604918	-	45600919	45601854	5pMXE	ENSMUST00000149290.3	known	0.36	4	7	4	7	y	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.14	2	12	2	12	y	0.19	3	13	3	13	y	0.11	1	8	1	8	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.21	3	11	3	11	y	0.26	5	14	5	14	y	0.10	2	18	2	18	y	0.05	1	19	1	19	n	ENSMUSG00000015806.13	Qdpr	chr5	protein_coding	quinoid dihydropteridine reductase
known_NIR_14909	chr5	45600919;45602085	45601854;45604918	-	45600919	45604918	cassetteExon	ENSMUST00000198258.5	known	0.99	476.5	4	7;946	4	y	1.00	424.0	0	2;846	0	n	1.00	210.5	0	8;413	0	n	1.00	551.5	2	12;1091	2	y	0.99	545.0	3	13;1077	3	y	0.99	163.5	1	8;319	1	n	1.00	565.0	0	13;1117	0	n	1.00	239.0	0	10;468	0	n	0.99	578.0	3	11;1145	3	y	0.99	782.5	5	14;1551	5	y	1.00	669.0	2	18;1320	2	y	1.00	913.5	1	19;1808	1	n	ENSMUSG00000015806.13	Qdpr	chr5	protein_coding	quinoid dihydropteridine reductase
known_NIR_14910	chr5	45600919;45602085	45601989;45604918	-	45600919	45604918	cassetteExon	ENSMUST00000198258.5	known	1.00	973.0	4	1000;946	4	y	1.00	846.0	0	846;846	0	n	1.00	427.5	0	442;413	0	n	1.00	1076.0	2	1061;1091	2	y	1.00	1131.0	3	1185;1077	3	y	1.00	353.5	1	388;319	1	n	1.00	1136.0	0	1155;1117	0	n	1.00	473.0	0	478;468	0	n	1.00	1141.5	3	1138;1145	3	y	1.00	1579.5	5	1608;1551	5	y	1.00	1319.5	2	1319;1320	2	y	1.00	1807.0	1	1806;1808	1	n	ENSMUSG00000015806.13	Qdpr	chr5	protein_coding	quinoid dihydropteridine reductase
known_NIR_14911	chr5	45600919;45605010	45604918;45607349	-	45600919;45604889	45601989;45607349	MXE	ENSMUST00000154962.8	known	0.42	367.5	503.0	4;731	1000;6	y	0.39	269.0	423.0	0;538	846;0	n	0.42	158.0	221.0	0;316	442;0	n	0.44	424.0	533.0	2;846	1061;5	y	0.41	416.5	594.5	3;830	1185;4	y	0.42	142.5	194.5	1;284	388;1	n	0.42	418.0	579.0	0;836	1155;3	n	0.43	178.0	239.0	0;356	478;0	n	0.42	410.0	571.5	3;817	1138;5	y	0.41	558.0	805.0	5;1111	1608;2	y	0.43	499.5	661.5	2;997	1319;4	y	0.42	666.5	906.0	1;1332	1806;6	n	ENSMUSG00000015806.13	Qdpr	chr5	protein_coding	quinoid dihydropteridine reductase
known_NIR_14912	chr5	45602085	45604797	-	45602085	45604918	A5SS	ENSMUST00000117425.8	known	0.00	3	946	3	946	y	0.00	1	846	1	846	n	0.00	0	413	0	413	n	0.00	3	1091	3	1091	y	0.00	5	1077	5	1077	y	0.01	2	319	2	319	y	0.01	8	1117	8	1117	y	0.00	0	468	0	468	n	0.01	10	1145	10	1145	y	0.00	1	1551	1	1551	n	0.00	3	1320	3	1320	y	0.00	1	1808	1	1808	n	ENSMUSG00000015806.13	Qdpr	chr5	protein_coding	quinoid dihydropteridine reductase
known_NIR_14913	chr5	45602085;45604889	45604797;45607349	-	45602085;45605010	45604918;45607349	MXE	ENSMUST00000197946.5	known	0.01	4.5	838.5	3;6	946;731	y	0.00	0.5	692.0	1;0	846;538	n	0.00	0.0	364.5	0;0	413;316	n	0.00	4.0	968.5	3;5	1091;846	y	0.00	4.5	953.5	5;4	1077;830	y	0.00	1.5	301.5	2;1	319;284	n	0.01	5.5	976.5	8;3	1117;836	y	0.00	0.0	412.0	0;0	468;356	n	0.01	7.5	981.0	10;5	1145;817	y	0.00	1.5	1331.0	1;2	1551;1111	n	0.00	3.5	1158.5	3;4	1320;997	y	0.00	3.5	1570.0	1;6	1808;1332	n	ENSMUSG00000015806.13	Qdpr	chr5	protein_coding	quinoid dihydropteridine reductase
known_NIR_14914	chr5	45605010	45607224	-	45605010	45607349	A5SS	ENSMUST00000197946.5	known	0.00	0	731	0	731	n	0.00	0	538	0	538	n	0.00	0	316	0	316	n	0.00	0	846	0	846	n	0.00	2	830	2	830	y	0.01	2	284	2	284	y	0.00	0	836	0	836	n	0.00	0	356	0	356	n	0.00	0	817	0	817	n	0.00	2	1111	2	1111	y	0.00	0	997	0	997	n	0.00	0	1332	0	1332	n	ENSMUSG00000015806.13	Qdpr	chr5	protein_coding	quinoid dihydropteridine reductase
known_NIR_14915	chr5	45605010	45607349	-	45605010	45607432	A5SS	ENSMUST00000198258.5	known	1.00	731	2	731	2	y	1.00	538	2	538	2	y	1.00	316	1	316	1	n	0.99	846	9	846	9	y	0.99	830	5	830	5	y	1.00	284	0	284	0	n	1.00	836	1	836	1	n	1.00	356	0	356	0	n	0.99	817	5	817	5	y	0.99	1111	6	1111	6	y	0.99	997	6	997	6	y	0.99	1332	13	1332	13	y	ENSMUSG00000015806.13	Qdpr	chr5	protein_coding	quinoid dihydropteridine reductase
known_NIR_14916	chr5	45652623	45654262	+	45652623	45657745	A3SS	ENSMUST00000198534.2	known	1.00	753	3	753	3	y	1.00	593	2	593	2	y	0.99	578	4	578	4	y	1.00	1102	4	1102	4	y	1.00	883	3	883	3	y	0.99	341	3	341	3	y	0.99	773	9	773	9	y	1.00	440	1	440	1	n	1.00	827	2	827	2	y	1.00	1105	1	1105	1	n	1.00	813	1	813	1	n	1.00	1191	3	1191	3	y	ENSMUSG00000039682.13	Lap3	chr5	protein_coding	leucine aminopeptidase 3
known_NIR_14917	chr5	45655935	45657745	+	45652623	45657745	A5SS	ENSMUST00000198534.2	known	0.99	558	3	558	3	y	1.00	442	2	442	2	y	0.99	450	4	450	4	y	1.00	829	4	829	4	y	1.00	739	3	739	3	y	0.99	258	3	258	3	y	0.98	577	9	577	9	y	1.00	340	1	340	1	n	1.00	671	2	671	2	y	1.00	1031	1	1031	1	n	1.00	675	1	675	1	n	1.00	972	3	972	3	y	ENSMUSG00000039682.13	Lap3	chr5	protein_coding	leucine aminopeptidase 3
known_NIR_14918	chr5	45678493	45679778	+	45677826	45679778	A5SS	ENSMUST00000156481.8	known	0.00	0	122	0	122	n	0.00	0	127	0	127	n	0.01	2	208	2	208	y	0.00	0	128	0	128	n	0.00	0	160	0	160	n	0.00	0	105	0	105	n	0.00	0	212	0	212	n	0.00	0	99	0	99	n	0.00	0	138	0	138	n	0.00	0	200	0	200	n	0.00	0	138	0	138	n	0.00	0	154	0	154	n	ENSMUSG00000015804.15	Med28	chr5	protein_coding	mediator complex subunit 28
known_NIR_14919	chr5	45679844	45682495	+	45679844;45680876	45680764;45682495	ES	ENSMUST00000156481.8	known	0.01	2	175.5	2	172;179	y	0.02	3	166.5	3	146;187	y	0.01	3	215.5	3	192;239	y	0.01	1	139.5	1	121;158	n	0.01	2	205.0	2	189;221	y	0.00	0	107.5	0	114;101	n	0.00	0	223.5	0	203;244	n	0.00	0	112.0	0	107;117	n	0.01	2	152.0	2	137;167	y	0.02	4	207.5	4	194;221	y	0.00	0	170.5	0	155;186	n	0.00	0	190.5	0	171;210	n	ENSMUSG00000015804.15	Med28	chr5	protein_coding	mediator complex subunit 28
known_NIR_14920	chr5	45680876	45682495	+	45677826	45682495	A5SS	ENSMUST00000119579.3	known	1.00	179	0	179	0	n	1.00	187	0	187	0	n	1.00	239	0	239	0	n	1.00	158	0	158	0	n	1.00	221	1	221	1	n	1.00	101	0	101	0	n	1.00	244	0	244	0	n	1.00	117	0	117	0	n	0.99	167	1	167	1	n	1.00	221	0	221	0	n	1.00	186	0	186	0	n	0.99	210	2	210	2	y	ENSMUSG00000015804.15	Med28	chr5	protein_coding	mediator complex subunit 28
known_NIR_14921	chr5	45859339	45880316	-	45859339	45893073	A5SS	ENSMUST00000045586.13	known	0.33	2	4	2	4	n	0.00	0	1	0	1	n	0.50	2	2	2	2	n	0.60	3	2	3	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	n	1.00	1	0	1	0	n	0.50	2	2	2	2	n	0.25	1	3	1	3	n	0.25	1	3	1	3	n	0.64	7	4	7	4	y	ENSMUSG00000015882.19	Lcorl	chr5	protein_coding	ligand dependent nuclear receptor corepressor-like
known_NIR_14922	chr5	45859339	45893073	-	45859339;45885084	45880316;45893073	ES	ENSMUST00000238522.2	known	0.80	4	1.0	4	2;0	n	0.50	1	1.0	1	0;2	n	0.67	2	1.0	2	2;0	n	0.44	2	2.5	2	3;2	n	0.00	0	0.5	0	0;1	n	-	-	-	-	-	-	0.40	1	1.5	1	3;0	n	0.00	0	1.5	0	1;2	n	0.57	2	1.5	2	2;1	n	0.55	3	2.5	3	1;4	n	0.86	3	0.5	3	1;0	n	0.47	4	4.5	4	7;2	y	ENSMUSG00000015882.19	Lcorl	chr5	protein_coding	ligand dependent nuclear receptor corepressor-like
known_NIR_14923	chr5	45859339	45904398	-	45859339;45893166	45893073;45904398	ES	ENSMUST00000045586.13	known	0.31	2	4.5	2	4;5	y	0.31	2	4.5	2	1;8	n	0.10	1	9.0	1	2;16	n	0.27	2	5.5	2	2;9	y	0.62	4	2.5	4	0;5	n	0.60	3	2.0	3	0;4	n	0.25	1	3.0	1	1;5	n	0.50	1	1.0	1	0;2	n	0.43	3	4.0	3	2;6	y	0.17	1	5.0	1	3;7	n	0.61	7	4.5	7	3;6	y	0.11	1	8.5	1	4;13	n	ENSMUSG00000015882.19	Lcorl	chr5	protein_coding	ligand dependent nuclear receptor corepressor-like
known_NIR_14924	chr5	45891827	45893073	-	45859339	45893073	A3SS	ENSMUST00000045586.13	known	0.50	4	4	4	4	n	0.50	1	1	1	1	n	0.87	13	2	13	2	y	0.60	3	2	3	2	n	1.00	9	0	9	0	n	1.00	5	0	5	0	n	0.80	4	1	4	1	n	1.00	3	0	3	0	n	0.50	2	2	2	2	n	0.75	9	3	9	3	y	0.57	4	3	4	3	n	0.71	10	4	10	4	y	ENSMUSG00000015882.19	Lcorl	chr5	protein_coding	ligand dependent nuclear receptor corepressor-like
known_NIR_14925	chr5	45891827	45893073	-	45885084	45893073	A3SS	ENSMUST00000238522.2	known	1.00	4	0	4	0	n	0.33	1	2	1	2	n	1.00	13	0	13	0	n	0.60	3	2	3	2	n	0.90	9	1	9	1	n	1.00	5	0	5	0	n	1.00	4	0	4	0	n	0.60	3	2	3	2	n	0.67	2	1	2	1	n	0.69	9	4	9	4	y	1.00	4	0	4	0	n	0.83	10	2	10	2	y	ENSMUSG00000015882.19	Lcorl	chr5	protein_coding	ligand dependent nuclear receptor corepressor-like
known_NIR_14926	chr5	45931406	45932734	-	45904649	45932734	A3SS	ENSMUST00000045586.13	known	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.12	1	7	1	7	n	0.05	1	18	1	18	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.12	1	7	1	7	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.17	2	10	2	10	y	ENSMUSG00000015882.19	Lcorl	chr5	protein_coding	ligand dependent nuclear receptor corepressor-like
known_NIR_14927	chr5	48532952	48536672	+	48532952;48534507	48534417;48536672	ES	ENSMUST00000196604.2	known	0.00	0	14.0	0	16;12	n	0.25	2	6.0	2	5;7	y	0.13	4	26.0	4	24;28	y	0.09	2	21.0	2	18;24	y	0.13	3	20.5	3	22;19	y	0.00	0	12.5	0	12;13	n	0.00	0	15.0	0	16;14	n	0.08	1	11.5	1	14;9	n	0.21	2	7.5	2	6;9	y	0.17	4	20.0	4	22;18	y	0.06	1	16.0	1	16;16	n	0.08	1	11.0	1	13;9	n	ENSMUSG00000029089.9	5730480H06Rik	chr5	protein_coding	RIKEN cDNA 5730480H06 gene
known_NIR_14928	chr5	50215685	50215894	-	50183120	50215894	A3SS	ENSMUST00000030971.7	known	0.00	0	17	0	17	n	0.00	0	18	0	18	n	0.00	0	29	0	29	n	0.00	0	24	0	24	n	0.04	2	50	2	50	y	0.00	0	10	0	10	n	0.00	0	26	0	26	n	0.00	0	14	0	14	n	0.00	0	19	0	19	n	0.00	0	26	0	26	n	0.10	2	19	2	19	y	0.03	1	32	1	32	n	ENSMUSG00000029090.13	Adgra3	chr5	protein_coding	adhesion G protein-coupled receptor A3
known_NIR_14929	chr5	51647463	51647542	-	51647432	51647542	A3SS	ENSMUST00000132734.8	known	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.45	5	6	5	6	y	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.12	1	7	1	7	n	0.17	1	5	1	5	n	0.00	0	10	0	10	n	ENSMUSG00000029167.14	Ppargc1a	chr5	protein_coding	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
known_NIR_14930	chr5	52314911	52317572	-	52314919	52317572	A3SS	ENSMUST00000031061.12	known	0.05	5	86	5	86	y	0.00	0	82	0	82	n	0.13	16	111	16	111	y	0.11	14	117	14	117	y	0.11	13	110	13	110	y	0.00	0	55	0	55	n	0.00	0	107	0	107	n	0.00	0	54	0	54	n	0.11	9	73	9	73	y	0.06	7	101	7	101	y	0.04	3	69	3	69	y	0.09	11	108	11	108	y	ENSMUSG00000029169.12	Dhx15	chr5	protein_coding	DEAH (Asp-Glu-Ala-His) box polypeptide 15
known_NIR_14931	chr5	52813697	52821510	-	52813697;52818074	52817972;52821510	ES	ENSMUST00000031069.13	known	0.11	6	48.0	6	52;44	y	0.00	0	29.5	0	32;27	n	0.04	2	49.0	2	51;47	y	0.01	1	66.0	1	69;63	n	0.00	0	61.0	0	72;50	n	0.00	0	37.5	0	35;40	n	0.05	3	53.0	3	59;47	y	0.00	0	35.0	0	29;41	n	0.05	3	58.0	3	56;60	y	0.00	0	77.0	0	70;84	n	0.02	1	44.0	1	45;43	n	0.00	0	62.0	0	67;57	n	ENSMUSG00000029173.13	Sepsecs	chr5	protein_coding	Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase
known_NIR_14932	chr5	52821663	52822504	-	52821663	52822578	A5SS	ENSMUST00000031069.13	known	0.08	3	36	3	36	y	0.04	1	26	1	26	n	0.07	3	42	3	42	y	0.00	0	61	0	61	n	0.00	0	70	0	70	n	0.15	5	29	5	29	y	0.02	1	47	1	47	n	0.00	0	31	0	31	n	0.02	1	50	1	50	n	0.00	0	91	0	91	n	0.06	3	49	3	49	y	0.00	0	68	0	68	n	ENSMUSG00000029173.13	Sepsecs	chr5	protein_coding	Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase
known_NIR_14933	chr5	52823448	52826308	-	52823448	52826241	A5SS	ENSMUST00000031069.13	known	0.00	0	21	0	21	n	0.08	1	12	1	12	n	0.04	1	27	1	27	n	0.00	0	47	0	47	n	0.05	2	41	2	41	y	0.00	0	19	0	19	n	0.06	2	30	2	30	y	0.00	0	22	0	22	n	0.00	0	32	0	32	n	0.00	0	51	0	51	n	0.00	0	24	0	24	n	0.00	0	33	0	33	n	ENSMUSG00000029173.13	Sepsecs	chr5	protein_coding	Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase
known_NIR_14934	chr5	52899310	52907950	+	52899310;52905847	52905711;52907950	ES	ENSMUST00000031081.11	known	0.17	7	34.5	7	33;36	y	0.00	0	16.0	0	18;14	n	0.03	2	64.0	2	68;60	y	0.02	1	40.0	1	43;37	n	0.13	6	39.5	6	45;34	y	0.06	2	30.0	2	33;27	y	0.05	2	40.5	2	40;41	y	0.00	0	21.0	0	25;17	n	0.00	0	22.0	0	22;22	n	0.00	0	54.0	0	55;53	n	0.00	0	38.5	0	42;35	n	0.09	4	43.0	4	43;43	y	ENSMUSG00000029186.13	Pi4k2b	chr5	protein_coding	phosphatidylinositol 4-kinase type 2 beta
known_NIR_14935	chr5	52899310;52900901	52900834;52907950	+	52899310	52907950	cassetteExon	ENSMUST00000131526.2	known	0.18	1.5	7	0;3	7	n	-	-	-	-	-	-	0.00	0.0	2	0;0	2	n	0.83	5.0	1	4;6	1	n	0.33	3.0	6	3;3	6	y	0.43	1.5	2	1;2	2	n	0.43	1.5	2	3;0	2	n	1.00	0.5	0	1;0	0	n	1.00	0.5	0	0;1	0	n	1.00	2.0	0	1;3	0	n	1.00	0.5	0	1;0	0	n	0.00	0.0	4	0;0	4	n	ENSMUSG00000029186.13	Pi4k2b	chr5	protein_coding	phosphatidylinositol 4-kinase type 2 beta
known_NIR_14936	chr5	52899310;52900901	52900834;52907950	+	52899310;52905847	52905711;52907950	MXE	ENSMUST00000031081.11	known	0.04	1.5	34.5	0;3	33;36	n	0.00	0.0	16.0	0;0	18;14	n	0.00	0.0	64.0	0;0	68;60	n	0.11	5.0	40.0	4;6	43;37	y	0.07	3.0	39.5	3;3	45;34	y	0.05	1.5	30.0	1;2	33;27	n	0.04	1.5	40.5	3;0	40;41	n	0.02	0.5	21.0	1;0	25;17	n	0.02	0.5	22.0	0;1	22;22	n	0.04	2.0	54.0	1;3	55;53	n	0.01	0.5	38.5	1;0	42;35	n	0.00	0.0	43.0	0;0	43;43	n	ENSMUSG00000029186.13	Pi4k2b	chr5	protein_coding	phosphatidylinositol 4-kinase type 2 beta
known_NIR_14937	chr5	53148079	53149556	-	53148079	53151423	A5SS	ENSMUST00000198248.5	known	1.00	209	0	209	0	n	1.00	134	0	134	0	n	1.00	96	0	96	0	n	1.00	155	0	155	0	n	1.00	204	0	204	0	n	1.00	65	0	65	0	n	1.00	222	0	222	0	n	0.99	85	1	85	1	n	0.99	175	1	175	1	n	0.98	251	4	251	4	y	1.00	181	0	181	0	n	1.00	201	0	201	0	n	ENSMUSG00000106352.5	5033403H07Rik	chr5	lncRNA	RIKEN cDNA 5033403H07 gene
known_NIR_14938	chr5	53424700	53434485	+	53424700	53425365	3pMXE	ENSMUST00000203623.2	known	0.92	67	6	67	6	y	0.92	97	8	97	8	y	0.94	89	6	89	6	y	0.94	100	6	100	6	y	0.87	113	17	113	17	y	0.82	41	9	41	9	y	0.94	108	7	108	7	y	0.94	61	4	61	4	y	0.88	78	11	78	11	y	0.90	129	15	129	15	y	0.93	122	9	122	9	y	0.94	91	6	91	6	y	ENSMUSG00000061461.12	Smim20	chr5	protein_coding	small integral membrane protein 20
known_NIR_14939	chr5	53424700;53425412	53425365;53434485	+	53424700	53434485	cassetteExon	ENSMUST00000147148.5	known	0.07	5.0	67	6;4	67	y	0.08	8.5	97	8;9	97	y	0.07	7.0	89	6;8	89	y	0.06	6.0	100	6;6	100	y	0.11	14.5	113	17;12	113	y	0.18	9.0	41	9;9	41	y	0.04	5.0	108	7;3	108	y	0.03	2.0	61	4;0	61	n	0.11	10.0	78	11;9	78	y	0.10	14.0	129	15;13	129	y	0.05	6.5	122	9;4	122	y	0.06	5.5	91	6;5	91	y	ENSMUSG00000061461.12	Smim20	chr5	protein_coding	small integral membrane protein 20
known_NIR_14940	chr5	53424700;53425673	53425365;53434485	+	53424700	53434485	cassetteExon	ENSMUST00000147148.5	known	0.06	4.5	67	6;3	67	y	0.05	5.0	97	8;2	97	y	0.04	3.5	89	6;1	89	n	0.03	3.0	100	6;0	100	n	0.08	10.0	113	17;3	113	y	0.10	4.5	41	9;0	41	n	0.06	6.5	108	7;6	108	y	0.05	3.0	61	4;2	61	y	0.07	5.5	78	11;0	78	n	0.06	8.0	129	15;1	129	n	0.04	5.5	122	9;2	122	y	0.04	3.5	91	6;1	91	n	ENSMUSG00000061461.12	Smim20	chr5	protein_coding	small integral membrane protein 20
known_NIR_14941	chr5	53425412	53434485	+	53425673	53434485	A5SS	ENSMUST00000204218.3	known	0.57	4	3	4	3	n	0.82	9	2	9	2	y	0.89	8	1	8	1	n	1.00	6	0	6	0	n	0.80	12	3	12	3	y	1.00	9	0	9	0	n	0.33	3	6	3	6	n	0.00	0	2	0	2	n	1.00	9	0	9	0	n	0.93	13	1	13	1	n	0.67	4	2	4	2	n	0.83	5	1	5	1	n	ENSMUSG00000061461.12	Smim20	chr5	protein_coding	small integral membrane protein 20
known_NIR_14942	chr5	53748066	53784725	+	53747828	53784725	A5SS	ENSMUST00000037618.13	known	-	-	-	-	-	-	1.00	2	0	2	0	n	0.73	8	3	8	3	y	1.00	8	0	8	0	n	1.00	7	0	7	0	n	1.00	5	0	5	0	n	1.00	8	0	8	0	n	0.88	7	1	7	1	n	0.67	4	2	4	2	n	0.62	5	3	5	3	n	0.67	4	2	4	2	n	1.00	4	0	4	0	n	ENSMUSG00000039191.13	Rbpj	chr5	protein_coding	recombination signal binding protein for immunoglobulin kappa J region
known_NIR_14943	chr5	54267212;54267481	54267458;54267879	+	54267212	54267879	cassetteExon	ENSMUST00000117661.9	known	0.02	0.5	27	0;1	27	n	0.00	0.0	6	0;0	6	n	0.04	1.0	24	1;1	24	n	0.00	0.0	34	0;0	34	n	0.03	0.5	19	1;0	19	n	0.25	2.0	6	2;2	6	y	0.05	1.0	21	1;1	21	n	0.11	1.0	8	2;0	8	n	0.00	0.0	21	0;0	21	n	0.00	0.0	29	0;0	29	n	0.06	1.5	24	1;2	24	n	0.00	0.0	19	0;0	19	n	ENSMUSG00000039156.20	Stim2	chr5	protein_coding	stromal interaction molecule 2
known_NIR_14944	chr5	5563223	5564765	-	5563251	5564765	A3SS	ENSMUST00000198303.5	known	0.05	2	37	2	37	y	0.04	1	26	1	26	n	0.11	4	32	4	32	y	0.06	3	48	3	48	y	0.09	6	59	6	59	y	0.05	2	35	2	35	y	0.09	4	43	4	43	y	0.03	1	31	1	31	n	0.00	0	29	0	29	n	0.07	5	64	5	64	y	0.16	5	26	5	26	y	0.11	9	71	9	71	y	ENSMUSG00000046798.15	Cldn12	chr5	protein_coding	claudin 12
known_NIR_14945	chr5	5563251	5564628	-	5563251	5564232	A5SS&ES	ENSMUST00000179804.8	known	0.83	19	4	19	4	y	0.71	5	2	5	2	n	0.73	27	10	27	10	y	0.75	21	7	21	7	y	0.82	32	7	32	7	y	0.72	13	5	13	5	y	0.77	23	7	23	7	y	0.67	10	5	10	5	y	0.75	9	3	9	3	y	0.71	20	8	20	8	y	0.78	14	4	14	4	y	0.50	7	7	7	7	y	ENSMUSG00000046798.15	Cldn12	chr5	protein_coding	claudin 12
known_NIR_14946	chr5	5563251	5564628	-	5563251	5564765	A5SS	ENSMUST00000198303.5	known	0.34	19	37	19	37	y	0.16	5	26	5	26	y	0.46	27	32	27	32	y	0.30	21	48	21	48	y	0.35	32	59	32	59	y	0.27	13	35	13	35	y	0.35	23	43	23	43	y	0.24	10	31	10	31	y	0.24	9	29	9	29	y	0.24	20	64	20	64	y	0.35	14	26	14	26	y	0.09	7	71	7	71	y	ENSMUSG00000046798.15	Cldn12	chr5	protein_coding	claudin 12
known_NIR_14947	chr5	5563251	5564765	-	5563251	5564232	5pMXE	ENSMUST00000134157.2	known	0.90	37	4	37	4	y	0.93	26	2	26	2	y	0.76	32	10	32	10	y	0.87	48	7	48	7	y	0.89	59	7	59	7	y	0.88	35	5	35	5	y	0.86	43	7	43	7	y	0.86	31	5	31	5	y	0.91	29	3	29	3	y	0.89	64	8	64	8	y	0.87	26	4	26	4	y	0.91	71	7	71	7	y	ENSMUSG00000046798.15	Cldn12	chr5	protein_coding	claudin 12
known_NIR_14948	chr5	5563251;5564376	5564232;5564765	-	5563251	5564765	cassetteExon	ENSMUST00000198303.5	known	0.06	2.5	37	4;1	37	n	0.04	1.0	26	2;0	26	n	0.17	6.5	32	10;3	32	y	0.07	3.5	48	7;0	48	n	0.06	3.5	59	7;0	59	n	0.10	4.0	35	5;3	35	y	0.08	3.5	43	7;0	43	n	0.10	3.5	31	5;2	31	y	0.05	1.5	29	3;0	29	n	0.07	5.0	64	8;2	64	y	0.12	3.5	26	4;3	26	y	0.05	3.5	71	7;0	71	n	ENSMUSG00000046798.15	Cldn12	chr5	protein_coding	claudin 12
known_NIR_14949	chr5	62761999;62763552	62763418;62769047	-	62761999	62769047	cassetteExon	ENSMUST00000160620.3	known	1.00	6.0	0	6;6	0	n	1.00	8.0	0	11;5	0	n	0.93	14.0	1	15;13	1	n	0.90	17.5	2	19;16	2	y	0.93	27.5	2	30;25	2	y	0.68	6.5	3	8;5	3	y	1.00	16.0	0	18;14	0	n	1.00	20.0	0	21;19	0	n	0.80	16.5	4	24;9	4	y	0.82	9.0	2	10;8	2	y	0.83	10.0	2	19;1	2	n	0.74	17.0	6	21;13	6	y	ENSMUSG00000037999.14	Arap2	chr5	protein_coding	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
known_NIR_14950	chr5	64033842;64045529	64045388;64053773	+	64033842	64053773	cassetteExon	ENSMUST00000081747.8	known	0.05	1.5	30	2;1	30	n	0.04	1.5	35	2;1	35	n	0.14	5.0	32	7;3	32	y	0.10	3.0	28	0;6	28	n	0.09	4.5	45	2;7	45	y	0.07	1.0	14	0;2	14	n	0.05	2.5	49	1;4	49	n	0.07	2.5	34	3;2	34	y	0.09	3.0	31	5;1	31	n	0.06	3.0	51	1;5	51	n	0.06	3.0	47	2;4	47	y	0.05	2.0	40	2;2	40	y	ENSMUSG00000060512.8	0610040J01Rik	chr5	protein_coding	RIKEN cDNA 0610040J01 gene
known_NIR_14951	chr5	64969846	64974078	+	64961134	64974078	A5SS	ENSMUST00000165536.8	known	0.04	2	53	2	53	y	0.03	1	31	1	31	n	0.01	1	71	1	71	n	0.03	2	66	2	66	y	0.00	0	65	0	65	n	0.00	0	25	0	25	n	0.05	2	40	2	40	y	0.00	0	43	0	43	n	0.00	0	26	0	26	n	0.02	1	54	1	54	n	0.04	2	55	2	55	y	0.00	0	58	0	58	n	ENSMUSG00000029178.15	Klf3	chr5	protein_coding	Kruppel-like factor 3 (basic)
known_NIR_14952	chr5	64980372	64984453	+	64984225	64984453	5pMXE	ENSMUST00000198946.2	known	0.96	74	3	74	3	y	1.00	62	0	62	0	n	0.98	104	2	104	2	y	0.98	83	2	83	2	y	0.99	79	1	79	1	n	1.00	35	0	35	0	n	0.99	86	1	86	1	n	1.00	59	0	59	0	n	0.97	66	2	66	2	y	0.97	97	3	97	3	y	0.99	69	1	69	1	n	0.97	70	2	70	2	y	ENSMUSG00000029178.15	Klf3	chr5	protein_coding	Kruppel-like factor 3 (basic)
known_NIR_14953	chr5	65129805	65137051	+	65127487	65137051	A5SS	ENSMUST00000031080.15	known	0.06	1	17	1	17	n	0.05	1	18	1	18	n	0.06	2	32	2	32	y	0.04	1	25	1	25	n	0.03	1	33	1	33	n	0.04	1	27	1	27	n	0.00	0	24	0	24	n	0.09	2	20	2	20	y	0.15	2	11	2	11	y	0.04	1	26	1	26	n	0.09	2	20	2	20	y	0.10	2	19	2	19	y	ENSMUSG00000029185.15	Fam114a1	chr5	protein_coding	family with sequence similarity 114, member A1
known_NIR_14954	chr5	65306144	65309979	+	65306144	65313398	A3SS	ENSMUST00000204097.3	known	0.02	1	41	1	41	n	0.00	0	35	0	35	n	0.05	2	37	2	37	y	0.00	0	51	0	51	n	0.02	1	51	1	51	n	0.00	0	21	0	21	n	0.06	3	49	3	49	y	0.08	2	23	2	23	y	0.00	0	23	0	23	n	0.01	1	68	1	68	n	0.00	0	34	0	34	n	0.03	1	32	1	32	n	ENSMUSG00000054920.13	Klhl5	chr5	protein_coding	kelch-like 5
known_NIR_14955	chr5	65420489	65421586	-	65420492	65421586	A3SS	ENSMUST00000203581.3	known	0.70	30	13	30	13	y	0.55	37	30	37	30	y	0.75	27	9	27	9	y	0.54	22	19	22	19	y	0.62	30	18	30	18	y	0.72	13	5	13	5	y	0.50	33	33	33	33	y	0.63	12	7	12	7	y	0.58	25	18	25	18	y	0.73	48	18	48	18	y	0.51	25	24	25	24	y	0.74	34	12	34	12	y	ENSMUSG00000029191.17	Rfc1	chr5	protein_coding	replication factor C (activator 1) 1
known_NIR_14956	chr5	65436166	65436800	-	65436163	65436800	A3SS	ENSMUST00000203581.3	known	0.70	23	10	23	10	y	0.50	6	6	6	6	y	0.48	10	11	10	11	y	0.54	13	11	13	11	y	0.29	7	17	7	17	y	0.33	5	10	5	10	y	0.46	17	20	17	20	y	0.46	6	7	6	7	y	0.53	8	7	8	7	y	0.50	17	17	17	17	y	0.43	9	12	9	12	y	0.59	24	17	24	17	y	ENSMUSG00000029191.17	Rfc1	chr5	protein_coding	replication factor C (activator 1) 1
known_NIR_14957	chr5	65545810	65545905	-	65545784	65545905	A3SS	ENSMUST00000151917.6	known	0.00	5	1170	5	1170	y	0.01	9	1288	9	1288	y	0.00	7	1556	7	1556	y	0.00	0	1046	0	1046	n	0.01	8	1393	8	1393	y	0.00	4	806	4	806	y	0.00	3	1529	3	1529	y	0.00	0	894	0	894	n	0.00	0	1006	0	1006	n	0.01	8	1490	8	1490	y	0.01	8	1276	8	1276	y	0.00	6	1426	6	1426	y	ENSMUSG00000047215.15	Rpl9	chr5	protein_coding	ribosomal protein L9
known_NIR_14958	chr5	65549016	65549678	+	65549016	65549563	A3SS	ENSMUST00000122026.6	known	0.00	0	51	0	51	n	0.05	4	69	4	69	y	0.04	3	79	3	79	y	0.02	2	100	2	100	y	0.05	4	75	4	75	y	0.13	7	47	7	47	y	0.02	2	83	2	83	y	0.06	3	49	3	49	y	0.03	2	68	2	68	y	0.06	8	131	8	131	y	0.05	4	76	4	76	y	0.05	5	86	5	86	y	ENSMUSG00000029199.12	Lias	chr5	protein_coding	lipoic acid synthetase
known_NIR_14959	chr5	65625844	65650284	-	65625844	65650079	5pMXE	ENSMUST00000196121.2	known	0.00	1	253	1	253	n	0.00	0	219	0	219	n	0.02	9	442	9	442	y	0.00	1	232	1	232	n	0.02	9	390	9	390	y	0.01	3	339	3	339	y	0.01	4	289	4	289	y	0.00	1	305	1	305	n	0.00	0	179	0	179	n	0.00	1	339	1	339	n	0.01	2	253	2	253	y	0.00	1	288	1	288	n	ENSMUSG00000105835.2	Gm43552	chr5	protein_coding	predicted gene 43552
known_NIR_14960	chr5	65694801	65723332	+	65694889	65723332	A5SS	ENSMUST00000142407.8	known	0.01	2	182	2	182	y	0.01	2	162	2	162	y	0.01	3	317	3	317	y	0.01	2	185	2	185	y	0.00	0	251	0	251	n	0.01	1	159	1	159	n	0.00	0	277	0	277	n	0.00	0	133	0	133	n	0.01	2	142	2	142	y	0.00	1	244	1	244	n	0.02	3	176	3	176	y	0.02	5	211	5	211	y	ENSMUSG00000029203.17	Ube2k	chr5	protein_coding	ubiquitin-conjugating enzyme E2K
known_NIR_14961	chr5	65694889	65728875	+	65694889;65723425	65723332;65728875	ES	ENSMUST00000142407.8	known	0.05	8	168.5	8	182;155	y	0.08	12	147.5	12	162;133	y	0.04	14	302.0	14	317;287	y	0.05	8	168.5	8	185;152	y	0.05	13	260.0	13	251;269	y	0.04	6	153.0	6	159;147	y	0.06	17	252.5	17	277;228	y	0.05	6	127.0	6	133;121	y	0.09	14	145.5	14	142;149	y	0.03	8	225.0	8	244;206	y	0.05	8	168.0	8	176;160	y	0.06	12	205.0	12	211;199	y	ENSMUSG00000029203.17	Ube2k	chr5	protein_coding	ubiquitin-conjugating enzyme E2K
known_NIR_14962	chr5	65694889	65728875	+	65723425	65728875	A5SS&ES	ENSMUST00000201292.4	known	0.05	8	155	8	155	y	0.08	12	133	12	133	y	0.05	14	287	14	287	y	0.05	8	152	8	152	y	0.05	13	269	13	269	y	0.04	6	147	6	147	y	0.07	17	228	17	228	y	0.05	6	121	6	121	y	0.09	14	149	14	149	y	0.04	8	206	8	206	y	0.05	8	160	8	160	y	0.06	12	199	12	199	y	ENSMUSG00000029203.17	Ube2k	chr5	protein_coding	ubiquitin-conjugating enzyme E2K
known_NIR_14963	chr5	65694889	65738729	+	65694889	65723332	A3SS&ES	ENSMUST00000201266.4	known	0.01	2	182	2	182	y	0.01	2	162	2	162	y	0.01	3	317	3	317	y	0.00	0	185	0	185	n	0.01	3	251	3	251	y	0.01	1	159	1	159	n	0.01	4	277	4	277	y	0.01	2	133	2	133	y	0.00	0	142	0	142	n	0.01	2	244	2	244	y	0.02	3	176	3	176	y	0.02	5	211	5	211	y	ENSMUSG00000029203.17	Ube2k	chr5	protein_coding	ubiquitin-conjugating enzyme E2K
known_NIR_14964	chr5	65694889	65738729	+	65728933	65738729	A5SS&ES	ENSMUST00000201292.4	known	0.01	2	169	2	169	y	0.01	2	156	2	156	y	0.01	3	274	3	274	y	0.00	0	170	0	170	n	0.01	3	250	3	250	y	0.01	1	131	1	131	n	0.02	4	246	4	246	y	0.02	2	128	2	128	y	0.00	0	147	0	147	n	0.01	2	208	2	208	y	0.02	3	153	3	153	y	0.03	5	174	5	174	y	ENSMUSG00000029203.17	Ube2k	chr5	protein_coding	ubiquitin-conjugating enzyme E2K
known_NIR_14965	chr5	65694889;65723425	65723332;65738729	+	65694889	65738729	cassetteExon	ENSMUST00000201984.4	known	0.98	91.0	2	182;0	2	n	0.98	81.0	2	162;0	2	n	0.98	158.5	3	317;0	3	n	1.00	92.5	0	185;0	0	n	0.98	126.5	3	251;2	3	y	0.99	79.5	1	159;0	1	n	0.97	138.5	4	277;0	4	n	0.97	66.5	2	133;0	2	n	1.00	71.0	0	142;0	0	n	0.98	122.0	2	244;0	2	n	0.97	88.0	3	176;0	3	n	0.95	105.5	5	211;0	5	n	ENSMUSG00000029203.17	Ube2k	chr5	protein_coding	ubiquitin-conjugating enzyme E2K
known_NIR_14966	chr5	65694889;65723425	65723332;65738729	+	65694889;65728933	65728875;65738729	MXE	ENSMUST00000202679.4	known	0.51	91.0	88.5	182;0	8;169	n	0.49	81.0	84.0	162;0	12;156	n	0.52	158.5	144.0	317;0	14;274	n	0.51	92.5	89.0	185;0	8;170	n	0.49	126.5	131.5	251;2	13;250	y	0.54	79.5	68.5	159;0	6;131	n	0.51	138.5	131.5	277;0	17;246	n	0.50	66.5	67.0	133;0	6;128	n	0.47	71.0	80.5	142;0	14;147	n	0.53	122.0	108.0	244;0	8;208	n	0.52	88.0	80.5	176;0	8;153	n	0.53	105.5	93.0	211;0	12;174	n	ENSMUSG00000029203.17	Ube2k	chr5	protein_coding	ubiquitin-conjugating enzyme E2K
known_NIR_14967	chr5	65694889;65728933	65728875;65738729	+	65694889	65738729	cassetteExon	ENSMUST00000201984.4	known	0.98	88.5	2	8;169	2	y	0.98	84.0	2	12;156	2	y	0.98	144.0	3	14;274	3	y	1.00	89.0	0	8;170	0	n	0.98	131.5	3	13;250	3	y	0.99	68.5	1	6;131	1	n	0.97	131.5	4	17;246	4	y	0.97	67.0	2	6;128	2	y	1.00	80.5	0	14;147	0	n	0.98	108.0	2	8;208	2	y	0.96	80.5	3	8;153	3	y	0.95	93.0	5	12;174	5	y	ENSMUSG00000029203.17	Ube2k	chr5	protein_coding	ubiquitin-conjugating enzyme E2K
known_NIR_14968	chr5	65694889;65728933	65728875;65749219	+	65694889;65738811	65723332;65749219	MXE	ENSMUST00000202601.4	known	0.02	5.0	199.5	8;2	182;217	y	0.03	6.0	177.0	12;0	162;192	n	0.02	7.0	323.5	14;0	317;330	n	0.02	4.5	187.0	8;1	185;189	n	0.02	7.0	294.5	13;1	251;338	n	0.02	3.0	155.5	6;0	159;152	n	0.03	8.5	287.5	17;0	277;298	n	0.03	4.0	140.5	6;2	133;148	y	0.04	7.0	163.5	14;0	142;185	n	0.01	4.0	263.5	8;0	244;283	n	0.02	4.0	184.5	8;0	176;193	n	0.03	7.0	217.0	12;2	211;223	y	ENSMUSG00000029203.17	Ube2k	chr5	protein_coding	ubiquitin-conjugating enzyme E2K
known_NIR_14969	chr5	65694889;65728933	65728875;65749219	+	65694889;65738811	65738729;65749219	MXE	ENSMUST00000201984.4	known	0.04	5.0	109.5	8;2	2;217	y	0.06	6.0	97.0	12;0	2;192	n	0.04	7.0	166.5	14;0	3;330	n	0.05	4.5	94.5	8;1	0;189	n	0.04	7.0	170.5	13;1	3;338	n	0.04	3.0	76.5	6;0	1;152	n	0.05	8.5	151.0	17;0	4;298	n	0.05	4.0	75.0	6;2	2;148	y	0.07	7.0	92.5	14;0	0;185	n	0.03	4.0	142.5	8;0	2;283	n	0.04	4.0	98.0	8;0	3;193	n	0.06	7.0	114.0	12;2	5;223	y	ENSMUSG00000029203.17	Ube2k	chr5	protein_coding	ubiquitin-conjugating enzyme E2K
known_NIR_14970	chr5	65723425	65738729	+	65723425	65728875	A3SS&ES	ENSMUST00000201266.4	known	0.00	0	155	0	155	n	0.00	0	133	0	133	n	0.00	0	287	0	287	n	0.00	0	152	0	152	n	0.01	2	269	2	269	y	0.00	0	147	0	147	n	0.00	0	228	0	228	n	0.00	0	121	0	121	n	0.00	0	149	0	149	n	0.00	0	206	0	206	n	0.00	0	160	0	160	n	0.00	0	199	0	199	n	ENSMUSG00000029203.17	Ube2k	chr5	protein_coding	ubiquitin-conjugating enzyme E2K
known_NIR_14971	chr5	65723425	65738729	+	65723425;65728933	65728875;65738729	ES	ENSMUST00000142407.8	known	0.00	0	162.0	0	155;169	n	0.00	0	144.5	0	133;156	n	0.00	0	280.5	0	287;274	n	0.00	0	161.0	0	152;170	n	0.01	2	259.5	2	269;250	y	0.00	0	139.0	0	147;131	n	0.00	0	237.0	0	228;246	n	0.00	0	124.5	0	121;128	n	0.00	0	148.0	0	149;147	n	0.00	0	207.0	0	206;208	n	0.00	0	156.5	0	160;153	n	0.00	0	186.5	0	199;174	n	ENSMUSG00000029203.17	Ube2k	chr5	protein_coding	ubiquitin-conjugating enzyme E2K
known_NIR_14972	chr5	65728933	65749219	+	65728933;65738811	65738729;65749219	ES	ENSMUST00000142407.8	known	0.01	2	193.0	2	169;217	y	0.00	0	174.0	0	156;192	n	0.00	0	302.0	0	274;330	n	0.01	1	179.5	1	170;189	n	0.00	1	294.0	1	250;338	n	0.00	0	141.5	0	131;152	n	0.00	0	272.0	0	246;298	n	0.01	2	138.0	2	128;148	y	0.00	0	166.0	0	147;185	n	0.00	0	245.5	0	208;283	n	0.00	0	173.0	0	153;193	n	0.01	2	198.5	2	174;223	y	ENSMUSG00000029203.17	Ube2k	chr5	protein_coding	ubiquitin-conjugating enzyme E2K
known_NIR_14973	chr5	65728933	65749219	+	65738811	65749219	A5SS&ES	ENSMUST00000202082.4	known	0.01	2	217	2	217	y	0.00	0	192	0	192	n	0.00	0	330	0	330	n	0.01	1	189	1	189	n	0.00	1	338	1	338	n	0.00	0	152	0	152	n	0.00	0	298	0	298	n	0.01	2	148	2	148	y	0.00	0	185	0	185	n	0.00	0	283	0	283	n	0.00	0	193	0	193	n	0.01	2	223	2	223	y	ENSMUSG00000029203.17	Ube2k	chr5	protein_coding	ubiquitin-conjugating enzyme E2K
known_NIR_14974	chr5	65921588	65928730	+	65920933	65928730	A5SS	ENSMUST00000201489.4	known	0.50	1	1	1	1	n	1.00	3	0	3	0	n	0.31	4	9	4	9	y	0.69	11	5	11	5	y	0.43	3	4	3	4	n	1.00	3	0	3	0	n	0.71	10	4	10	4	y	0.20	1	4	1	4	n	0.60	3	2	3	2	n	0.90	9	1	9	1	n	1.00	2	0	2	0	n	0.25	1	3	1	3	n	ENSMUSG00000037795.15	N4bp2	chr5	protein_coding	NEDD4 binding protein 2
known_NIR_14975	chr5	66180176	66183473	-	66180176;66182502	66182296;66183473	ES	ENSMUST00000113726.8	known	0.00	0	48.0	0	50;46	n	0.03	1	29.5	1	39;20	n	0.05	3	52.0	3	55;49	y	0.01	1	68.0	1	54;82	n	0.00	0	74.5	0	83;66	n	0.00	0	31.0	0	38;24	n	0.00	0	63.5	0	66;61	n	0.00	0	45.5	0	50;41	n	0.03	1	38.0	1	44;32	n	0.01	1	79.0	1	92;66	n	0.05	2	37.0	2	30;44	y	0.01	1	71.0	1	78;64	n	ENSMUSG00000070780.12	Rbm47	chr5	protein_coding	RNA binding motif protein 47
known_NIR_14976	chr5	66203556	66211825	-	66203556	66238282	A5SS	ENSMUST00000094757.9	known	0.35	7	13	7	13	y	0.67	8	4	8	4	y	0.80	16	4	16	4	y	0.55	16	13	16	13	y	0.55	16	13	16	13	y	0.71	5	2	5	2	n	0.75	15	5	15	5	y	0.84	16	3	16	3	y	0.36	4	7	4	7	y	0.48	10	11	10	11	y	0.67	4	2	4	2	n	0.35	9	17	9	17	y	ENSMUSG00000070780.12	Rbm47	chr5	protein_coding	RNA binding motif protein 47
known_NIR_14977	chr5	66203556	66211825	-	66203556	66255050	A5SS	ENSMUST00000113726.8	known	0.41	7	10	7	10	y	0.67	8	4	8	4	y	0.53	16	14	16	14	y	0.44	16	20	16	20	y	0.40	16	24	16	24	y	0.29	5	12	5	12	y	0.45	15	18	15	18	y	0.59	16	11	16	11	y	0.25	4	12	4	12	y	0.29	10	25	10	25	y	0.36	4	7	4	7	y	0.47	9	10	9	10	y	ENSMUSG00000070780.12	Rbm47	chr5	protein_coding	RNA binding motif protein 47
known_NIR_14978	chr5	66203556	66226141	-	66203556	66211825	5pMXE	ENSMUST00000200852.4	known	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.11	2	16	2	16	y	0.06	1	16	1	16	n	0.06	1	16	1	16	n	0.29	2	5	2	5	n	0.25	5	15	5	15	y	0.00	0	16	0	16	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	ENSMUSG00000070780.12	Rbm47	chr5	protein_coding	RNA binding motif protein 47
known_NIR_14979	chr5	66203556	66226141	-	66203556	66255050	A5SS	ENSMUST00000113726.8	known	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.12	2	14	2	14	y	0.05	1	20	1	20	n	0.04	1	24	1	24	n	0.14	2	12	2	12	y	0.22	5	18	5	18	y	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	25	0	25	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	ENSMUSG00000070780.12	Rbm47	chr5	protein_coding	RNA binding motif protein 47
known_NIR_14980	chr5	66203556	66238282	-	66203556	66255050	A5SS	ENSMUST00000113726.8	known	0.57	13	10	13	10	y	0.50	4	4	4	4	n	0.22	4	14	4	14	y	0.39	13	20	13	20	y	0.35	13	24	13	24	y	0.14	2	12	2	12	y	0.22	5	18	5	18	y	0.21	3	11	3	11	y	0.37	7	12	7	12	y	0.31	11	25	11	25	y	0.22	2	7	2	7	n	0.63	17	10	17	10	y	ENSMUSG00000070780.12	Rbm47	chr5	protein_coding	RNA binding motif protein 47
known_NIR_14981	chr5	66203556	66239116	-	66203556	66211825	5pMXE	ENSMUST00000200852.4	known	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	16	0	16	n	0.00	0	16	0	16	n	0.06	1	16	1	16	n	0.17	1	5	1	5	n	0.12	2	15	2	15	y	0.11	2	16	2	16	y	0.00	0	4	0	4	n	0.23	3	10	3	10	y	0.00	0	4	0	4	n	0.18	2	9	2	9	y	ENSMUSG00000070780.12	Rbm47	chr5	protein_coding	RNA binding motif protein 47
known_NIR_14982	chr5	66203556	66239116	-	66203556	66238282	5pMXE	ENSMUST00000094757.9	known	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.07	1	13	1	13	n	0.33	1	2	1	2	n	0.29	2	5	2	5	n	0.40	2	3	2	3	n	0.00	0	7	0	7	n	0.21	3	11	3	11	y	0.00	0	2	0	2	n	0.11	2	17	2	17	y	ENSMUSG00000070780.12	Rbm47	chr5	protein_coding	RNA binding motif protein 47
known_NIR_14983	chr5	66203556	66239116	-	66203556	66255050	A5SS	ENSMUST00000113726.8	known	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.00	0	20	0	20	n	0.04	1	24	1	24	n	0.08	1	12	1	12	n	0.10	2	18	2	18	y	0.15	2	11	2	11	y	0.00	0	12	0	12	n	0.11	3	25	3	25	y	0.00	0	7	0	7	n	0.17	2	10	2	10	y	ENSMUSG00000070780.12	Rbm47	chr5	protein_coding	RNA binding motif protein 47
known_NIR_14984	chr5	66255131	66307859	-	66255131	66308882	A5SS	ENSMUST00000201544.4	known	1.00	4	0	4	0	n	1.00	14	0	14	0	n	0.83	10	2	10	2	y	0.88	15	2	15	2	y	0.86	12	2	12	2	y	1.00	11	0	11	0	n	0.76	13	4	13	4	y	0.73	8	3	8	3	y	1.00	7	0	7	0	n	0.90	18	2	18	2	y	0.50	2	2	2	2	n	0.82	14	3	14	3	y	ENSMUSG00000070780.12	Rbm47	chr5	protein_coding	RNA binding motif protein 47
known_NIR_14985	chr5	66255131	66308396	-	66255131	66307859	A5SS	ENSMUST00000200775.4	known	0.20	1	4	1	4	n	0.12	2	14	2	14	y	0.17	2	10	2	10	y	0.17	3	15	3	15	y	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.11	1	8	1	8	n	0.12	1	7	1	7	n	0.10	2	18	2	18	y	0.00	0	2	0	2	n	0.18	3	14	3	14	y	ENSMUSG00000070780.12	Rbm47	chr5	protein_coding	RNA binding motif protein 47
known_NIR_14986	chr5	66468423	66469502	-	66468426	66469502	A3SS	ENSMUST00000162955.8	known	0.15	2	11	2	11	y	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.33	3	6	3	6	n	0.20	2	8	2	8	y	0.20	1	4	1	4	n	0.00	0	9	0	9	n	0.40	2	3	2	3	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.11	1	8	1	8	n	0.55	6	5	6	5	y	ENSMUSG00000029207.17	Apbb2	chr5	protein_coding	amyloid beta (A4) precursor protein-binding, family B, member 2
known_NIR_14987	chr5	66470772;66480950	66480945;66520061	-	66470772	66520061	cassetteExon	ENSMUST00000162366.8	known	0.00	0.0	2	0;0	2	n	0.00	0.0	5	0;0	5	n	0.00	0.0	9	0;0	9	n	0.00	0.0	5	0;0	5	n	0.00	0.0	14	0;0	14	n	0.00	0.0	4	0;0	4	n	0.50	5.0	5	6;4	5	y	0.00	0.0	6	0;0	6	n	0.00	0.0	12	0;0	12	n	0.00	0.0	12	0;0	12	n	0.00	0.0	7	0;0	7	n	0.00	0.0	10	0;0	10	n	ENSMUSG00000029207.17	Apbb2	chr5	protein_coding	amyloid beta (A4) precursor protein-binding, family B, member 2
known_NIR_14988	chr5	66549200;66549678	66549616;66557419	-	66549200	66557419	cassetteExon	ENSMUST00000162366.8	known	1.00	4.0	0	3;5	0	n	1.00	2.5	0	1;4	0	n	0.64	3.5	2	4;3	2	n	0.67	4.0	2	4;4	2	y	1.00	7.5	0	7;8	0	n	-	-	-	-	-	-	1.00	5.5	0	4;7	0	n	1.00	4.5	0	5;4	0	n	1.00	0.5	0	0;1	0	n	1.00	7.5	0	7;8	0	n	1.00	5.0	0	7;3	0	n	0.88	7.0	1	7;7	1	n	ENSMUSG00000029207.17	Apbb2	chr5	protein_coding	amyloid beta (A4) precursor protein-binding, family B, member 2
known_NIR_14989	chr5	66557627	66608811	-	66557624	66608811	A3SS	ENSMUST00000162366.8	known	0.25	1	3	1	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.40	2	3	2	3	n	0.57	4	3	4	3	n	0.50	2	2	2	2	n	0.29	5	12	5	12	y	1.00	1	0	1	0	n	0.17	1	5	1	5	n	0.10	1	9	1	9	n	0.17	1	5	1	5	n	0.38	6	10	6	10	y	ENSMUSG00000029207.17	Apbb2	chr5	protein_coding	amyloid beta (A4) precursor protein-binding, family B, member 2
known_NIR_14990	chr5	66619509	66700805	-	66619509;66649515	66649401;66700805	ES	ENSMUST00000162366.8	known	0.00	0	4.0	0	2;6	n	0.00	0	4.5	0	7;2	n	0.00	0	6.5	0	4;9	n	0.25	2	6.0	2	6;6	y	0.22	1	3.5	1	2;5	n	0.00	0	5.0	0	1;9	n	0.00	0	10.0	0	5;15	n	0.00	0	2.0	0	2;2	n	0.00	0	0.5	0	1;0	n	0.00	0	4.0	0	3;5	n	0.00	0	1.0	0	2;0	n	0.36	2	3.5	2	4;3	n	ENSMUSG00000029207.17	Apbb2	chr5	protein_coding	amyloid beta (A4) precursor protein-binding, family B, member 2
known_NIR_14991	chr5	66649515	66775911	-	66649515;66700960	66700805;66775911	ES	ENSMUST00000162366.8	known	0.00	0	4.5	0	6;3	n	0.33	2	4.0	2	2;6	y	0.00	0	5.0	0	9;1	n	0.15	1	5.5	1	6;5	n	0.00	0	3.5	0	5;2	n	0.14	1	6.0	1	9;3	n	0.00	0	9.0	0	15;3	n	0.00	0	3.0	0	2;4	n	0.00	0	1.0	0	0;2	n	0.00	0	4.0	0	5;3	n	-	-	-	-	-	-	0.00	0	3.5	0	3;4	n	ENSMUSG00000029207.17	Apbb2	chr5	protein_coding	amyloid beta (A4) precursor protein-binding, family B, member 2
known_NIR_14992	chr5	67418376;67419997	67419821;67421073	+	67418376	67421073	cassetteExon	ENSMUST00000037918.12	known	0.02	5.0	201	4;6	201	y	0.01	1.0	122	2;0	122	n	0.02	2.5	145	3;2	145	y	0.01	3.5	246	0;7	246	n	0.00	1.0	237	2;0	237	n	0.01	1.0	87	0;2	87	n	0.01	2.0	207	2;2	207	y	0.01	1.5	109	0;3	109	n	0.01	1.0	162	0;2	162	n	0.01	2.0	205	0;4	205	n	0.01	1.5	175	0;3	175	n	0.01	3.5	241	3;4	241	y	ENSMUSG00000037720.17	Tmem33	chr5	protein_coding	transmembrane protein 33
known_NIR_14993	chr5	67473188	67476058	+	67473188	67482017	A3SS	ENSMUST00000162372.8	known	0.28	13	34	13	34	y	0.12	5	35	5	35	y	0.02	2	84	2	84	y	0.16	10	51	10	51	y	0.06	7	103	7	103	y	0.00	0	30	0	30	n	0.09	6	62	6	62	y	0.07	3	41	3	41	y	0.09	3	32	3	32	y	0.07	6	85	6	85	y	0.12	5	38	5	38	y	0.11	9	70	9	70	y	ENSMUSG00000029221.16	Slc30a9	chr5	protein_coding	solute carrier family 30 (zinc transporter), member 9
known_NIR_14994	chr5	67473188	67476058	+	67473188	67484196	A3SS	ENSMUST00000113676.6	known	0.68	13	6	13	6	y	0.42	5	7	5	7	y	0.08	2	22	2	22	y	0.71	10	4	10	4	y	0.47	7	8	7	8	y	0.00	0	5	0	5	n	0.38	6	10	6	10	y	0.21	3	11	3	11	y	0.21	3	11	3	11	y	0.40	6	9	6	9	y	0.33	5	10	5	10	y	0.41	9	13	9	13	y	ENSMUSG00000029221.16	Slc30a9	chr5	protein_coding	solute carrier family 30 (zinc transporter), member 9
known_NIR_14995	chr5	67473188	67482017	+	67473188	67485041	A3SS	ENSMUST00000202521.4	known	1.00	34	0	34	0	n	1.00	35	0	35	0	n	1.00	84	0	84	0	n	1.00	51	0	51	0	n	1.00	103	0	103	0	n	0.97	30	1	30	1	n	0.98	62	1	62	1	n	1.00	41	0	41	0	n	1.00	32	0	32	0	n	1.00	85	0	85	0	n	0.95	38	2	38	2	y	1.00	70	0	70	0	n	ENSMUSG00000029221.16	Slc30a9	chr5	protein_coding	solute carrier family 30 (zinc transporter), member 9
known_NIR_14996	chr5	67473188	67485041	+	67473188;67484295	67484196;67485041	ES	ENSMUST00000113676.6	known	0.00	0	34.0	0	6;62	n	0.00	0	25.0	0	7;43	n	0.00	0	63.5	0	22;105	n	0.00	0	36.0	0	4;68	n	0.00	0	42.5	0	8;77	n	0.03	1	28.0	1	5;51	n	0.02	1	44.0	1	10;78	n	0.00	0	31.5	0	11;52	n	0.00	0	28.5	0	11;46	n	0.00	0	44.5	0	9;80	n	0.06	2	32.0	2	10;54	y	0.00	0	58.0	0	13;103	n	ENSMUSG00000029221.16	Slc30a9	chr5	protein_coding	solute carrier family 30 (zinc transporter), member 9
known_NIR_14997	chr5	67473188;67482076	67482017;67484196	+	67473188	67484196	cassetteExon	ENSMUST00000113676.6	known	0.89	47.5	6	34;61	6	y	0.84	36.0	7	35;37	7	y	0.80	88.5	22	84;93	22	y	0.93	57.0	4	51;63	4	y	0.93	105.0	8	103;107	8	y	0.87	33.0	5	30;36	5	y	0.88	74.0	10	62;86	10	y	0.80	43.5	11	41;46	11	y	0.76	35.5	11	32;39	11	y	0.91	88.5	9	85;92	9	y	0.81	42.5	10	38;47	10	y	0.86	79.5	13	70;89	13	y	ENSMUSG00000029221.16	Slc30a9	chr5	protein_coding	solute carrier family 30 (zinc transporter), member 9
known_NIR_14998	chr5	69719200	69720426	+	69719200	69722773	A3SS	ENSMUST00000031113.13	known	0.88	21	3	21	3	y	0.67	8	4	8	4	y	1.00	19	0	19	0	n	1.00	10	0	10	0	n	0.75	12	4	12	4	y	0.85	11	2	11	2	y	0.87	13	2	13	2	y	1.00	12	0	12	0	n	0.87	13	2	13	2	y	0.96	22	1	22	1	n	0.95	19	1	19	1	n	0.94	16	1	16	1	n	ENSMUSG00000029208.17	Guf1	chr5	protein_coding	GUF1 homolog, GTPase
known_NIR_14999	chr5	69719200	69722773	+	69719200;69721990	69721867;69722773	ES	ENSMUST00000154728.8	known	0.19	3	13.0	3	3;23	y	0.36	4	7.0	4	3;11	y	0.00	0	14.0	0	2;26	n	0.00	0	13.0	0	2;24	n	0.17	4	19.5	4	3;36	y	0.24	2	6.5	2	1;12	n	0.11	2	15.5	2	6;25	y	0.00	0	13.5	0	0;27	n	0.13	2	13.5	2	5;22	y	0.06	1	16.0	1	3;29	n	0.06	1	14.5	1	4;25	n	0.07	1	14.0	1	8;20	n	ENSMUSG00000029208.17	Guf1	chr5	protein_coding	GUF1 homolog, GTPase
known_NIR_15000	chr5	69719200;69720565	69720426;69721867	+	69719200	69721867	cassetteExon	ENSMUST00000154728.8	known	0.86	18.5	3	21;16	3	y	0.79	11.0	3	8;14	3	y	0.89	16.0	2	19;13	2	y	0.88	14.5	2	10;19	2	y	0.86	18.5	3	12;25	3	y	0.91	10.0	1	11;9	1	n	0.65	11.0	6	13;9	6	y	1.00	10.5	0	12;9	0	n	0.74	14.0	5	13;15	5	y	0.86	18.5	3	22;15	3	y	0.79	15.0	4	19;11	4	y	0.67	16.5	8	16;17	8	y	ENSMUSG00000029208.17	Guf1	chr5	protein_coding	GUF1 homolog, GTPase
known_NIR_15001	chr5	69734784	69735321	-	69733296	69735321	A3SS	ENSMUST00000139632.8	known	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.12	1	7	1	7	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.00	0	12	0	12	n	0.18	2	9	2	9	y	ENSMUSG00000029209.16	Gnpda2	chr5	protein_coding	glucosamine-6-phosphate deaminase 2
known_NIR_15002	chr5	72320217	72325422	-	72320217;72322849	72322694;72325422	ES	ENSMUST00000013693.11	known	0.00	0	65.5	0	63;68	n	0.00	0	62.0	0	75;49	n	0.01	1	89.0	1	110;68	n	0.01	1	71.0	1	67;75	n	0.00	0	91.0	0	92;90	n	0.00	0	47.0	0	42;52	n	0.03	2	78.0	2	102;54	y	0.00	0	34.5	0	41;28	n	0.03	2	62.5	2	66;59	y	0.05	4	79.0	4	100;58	y	0.00	0	61.5	0	67;56	n	0.04	3	80.0	3	84;76	y	ENSMUSG00000029213.12	Commd8	chr5	protein_coding	COMM domain containing 8
known_NIR_15003	chr5	72320217;72322197	72322098;72322694	-	72320217	72322694	cassetteExon	ENSMUST00000013693.11	known	0.03	2.0	63	0;4	63	n	0.04	3.0	75	1;5	75	n	0.01	1.5	110	1;2	110	n	0.04	2.5	67	2;3	67	y	0.02	2.0	92	2;2	92	y	0.05	2.0	42	0;4	42	n	0.03	3.0	102	0;6	102	n	0.07	3.0	41	4;2	41	y	0.06	4.0	66	5;3	66	y	0.06	6.0	100	5;7	100	y	0.03	2.0	67	2;2	67	y	0.01	1.0	84	0;2	84	n	ENSMUSG00000029213.12	Commd8	chr5	protein_coding	COMM domain containing 8
known_NIR_15004	chr5	72322849	72323027	-	72322849	72325422	A5SS	ENSMUST00000013693.11	known	0.03	2	68	2	68	y	0.04	2	49	2	49	y	0.00	0	68	0	68	n	0.03	2	75	2	75	y	0.04	4	90	4	90	y	0.02	1	52	1	52	n	0.00	0	54	0	54	n	0.12	4	28	4	28	y	0.02	1	59	1	59	n	0.15	10	58	10	58	y	0.03	2	56	2	56	y	0.04	3	76	3	76	y	ENSMUSG00000029213.12	Commd8	chr5	protein_coding	COMM domain containing 8
known_NIR_15005	chr5	72686847	72694709	-	72686847;72690478	72690388;72694709	ES	ENSMUST00000087216.12	known	0.00	0	29.0	0	35;23	n	0.00	0	21.0	0	23;19	n	0.10	6	57.0	6	60;54	y	0.00	0	26.0	0	32;20	n	0.00	0	34.0	0	36;32	n	0.00	0	28.5	0	35;22	n	0.03	1	30.0	1	38;22	n	0.00	0	23.0	0	24;22	n	0.08	2	23.5	2	24;23	y	0.00	0	23.5	0	27;20	n	0.00	0	22.0	0	22;22	n	0.08	2	22.0	2	20;24	y	ENSMUSG00000072889.10	Nfxl1	chr5	protein_coding	nuclear transcription factor, X-box binding-like 1
known_NIR_15006	chr5	72931228	72939346	-	72931228;72936829	72936764;72939346	ES	ENSMUST00000071944.13	known	0.32	7	15.0	7	14;16	y	0.76	11	3.5	11	4;3	y	0.55	17	14.0	17	18;10	y	0.57	19	14.5	19	19;10	y	0.46	12	14.0	12	17;11	y	0.25	3	9.0	3	12;6	y	0.43	18	23.5	18	24;23	y	0.41	13	18.5	13	23;14	y	0.47	11	12.5	11	12;13	y	0.58	23	16.5	23	15;18	y	0.51	14	13.5	14	16;11	y	0.43	14	18.5	14	22;15	y	ENSMUSG00000029217.17	Tec	chr5	protein_coding	tec protein tyrosine kinase
known_NIR_15007	chr5	72944121	72946483	-	72944162	72946483	A3SS	ENSMUST00000071944.13	known	0.12	2	15	2	15	y	0.00	0	10	0	10	n	0.04	1	22	1	22	n	0.06	1	15	1	15	n	0.18	5	23	5	23	y	0.13	2	13	2	13	y	0.05	2	41	2	41	y	0.11	2	17	2	17	y	0.09	2	21	2	21	y	0.00	0	23	0	23	n	0.00	0	12	0	12	n	0.00	0	29	0	29	n	ENSMUSG00000029217.17	Tec	chr5	protein_coding	tec protein tyrosine kinase
known_NIR_15008	chr5	72980984	73025737	-	72980984;72982473	72982387;73025737	ES	ENSMUST00000071944.13	known	0.00	0	10.0	0	11;9	n	0.00	0	9.0	0	11;7	n	0.05	1	18.0	1	22;14	n	0.04	1	25.0	1	37;13	n	0.00	0	29.5	0	38;21	n	0.00	0	19.5	0	17;22	n	0.09	2	21.0	2	27;15	y	0.00	0	17.0	0	25;9	n	0.12	2	14.0	2	14;14	y	0.00	0	31.0	0	31;31	n	0.05	1	18.0	1	27;9	n	0.20	4	16.5	4	24;9	y	ENSMUSG00000029217.17	Tec	chr5	protein_coding	tec protein tyrosine kinase
known_NIR_15009	chr5	73115629;73123224	73123147;73131874	+	73115629	73131874	cassetteExon	ENSMUST00000144843.8	known	0.75	47.0	16	44;50	16	y	0.65	24.0	13	24;24	13	y	0.51	38.0	36	39;37	36	y	0.63	26.0	15	25;27	15	y	0.73	54.0	20	58;50	20	y	0.60	29.0	19	34;24	19	y	0.78	48.5	14	52;45	14	y	0.60	21.0	14	17;25	14	y	0.80	28.0	7	24;32	7	y	0.60	35.5	24	35;36	24	y	0.65	27.5	15	32;23	15	y	0.71	37.5	15	39;36	15	y	ENSMUSG00000036087.19	Slain2	chr5	protein_coding	SLAIN motif family, member 2
known_NIR_15010	chr5	73198936	73204294	-	73198936	73204863	A5SS	ENSMUST00000202697.4	known	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	16	0	16	n	0.06	1	15	1	15	n	0.00	0	13	0	13	n	0.10	1	9	1	9	n	0.11	1	8	1	8	n	0.00	0	8	0	8	n	0.33	3	6	3	6	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.10	2	18	2	18	y	ENSMUSG00000070733.14	Fryl	chr5	protein_coding	FRY like transcription coactivator
known_NIR_15011	chr5	73226254	73227226	-	73226257	73227226	A3SS	ENSMUST00000101127.12	known	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.10	1	9	1	9	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.18	2	9	2	9	y	ENSMUSG00000070733.14	Fryl	chr5	protein_coding	FRY like transcription coactivator
known_NIR_15012	chr5	73228649	73230079	-	73228652	73230079	A3SS	ENSMUST00000101127.12	known	0.29	2	5	2	5	n	0.00	0	1	0	1	n	0.23	3	10	3	10	y	0.22	2	7	2	7	n	0.32	7	15	7	15	y	0.17	1	5	1	5	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.22	2	7	2	7	n	0.36	4	7	4	7	y	0.25	1	3	1	3	n	0.33	3	6	3	6	n	ENSMUSG00000070733.14	Fryl	chr5	protein_coding	FRY like transcription coactivator
known_NIR_15013	chr5	73450319	73452269	+	73450319;73451690	73451628;73452269	ES	ENSMUST00000071081.13	known	0.01	3	353.0	3	338;368	y	0.00	1	254.0	1	250;258	n	0.01	2	361.0	2	340;382	y	0.01	2	378.5	2	343;414	y	0.00	0	400.0	0	363;437	n	0.00	0	197.0	0	187;207	n	0.00	1	387.0	1	362;412	n	0.00	0	217.0	0	215;219	n	0.00	0	271.0	0	281;261	n	0.01	4	355.0	4	349;361	y	0.00	0	259.5	0	233;286	n	0.01	3	378.0	3	384;372	y	ENSMUSG00000029152.14	Ociad1	chr5	protein_coding	OCIA domain containing 1
known_NIR_15014	chr5	73450319;73451353	73451309;73451628	+	73450319	73451628	cassetteExon	ENSMUST00000071081.13	known	0.07	26.0	338	23;29	338	y	0.08	22.0	250	13;31	250	y	0.06	20.5	340	17;24	340	y	0.10	40.0	343	36;44	343	y	0.06	23.0	363	20;26	363	y	0.04	7.5	187	6;9	187	y	0.05	19.0	362	19;19	362	y	0.04	9.0	215	7;11	215	y	0.05	14.5	281	14;15	281	y	0.06	22.5	349	16;29	349	y	0.09	22.0	233	15;29	233	y	0.04	17.0	384	14;20	384	y	ENSMUSG00000029152.14	Ociad1	chr5	protein_coding	OCIA domain containing 1
known_NIR_15015	chr5	73450319;73451690	73451309;73452269	+	73450319	73452269	cassetteExon	ENSMUST00000202237.4	known	0.98	195.5	3	23;368	3	y	0.99	135.5	1	13;258	1	n	0.99	199.5	2	17;382	2	y	0.99	225.0	2	36;414	2	y	1.00	228.5	0	20;437	0	n	1.00	106.5	0	6;207	0	n	1.00	215.5	1	19;412	1	n	1.00	113.0	0	7;219	0	n	1.00	137.5	0	14;261	0	n	0.98	188.5	4	16;361	4	y	1.00	150.5	0	15;286	0	n	0.98	193.0	3	14;372	3	y	ENSMUSG00000029152.14	Ociad1	chr5	protein_coding	OCIA domain containing 1
known_NIR_15016	chr5	73450825	73451309	+	73450319	73451309	A5SS	ENSMUST00000202250.4	known	0.00	0	23	0	23	n	0.00	0	13	0	13	n	0.00	0	17	0	17	n	0.00	0	36	0	36	n	0.09	2	20	2	20	y	0.00	0	6	0	6	n	0.00	0	19	0	19	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.00	0	15	0	15	n	0.00	0	14	0	14	n	ENSMUSG00000029152.14	Ociad1	chr5	protein_coding	OCIA domain containing 1
known_NIR_15017	chr5	73458060	73464009	+	73458060	73460935	A3SS&ES	ENSMUST00000071081.13	known	0.00	0	281	0	281	n	0.00	0	250	0	250	n	0.02	8	344	8	344	y	0.00	0	380	0	380	n	0.00	0	393	0	393	n	0.00	0	194	0	194	n	0.00	0	364	0	364	n	0.00	0	216	0	216	n	0.03	8	254	8	254	y	0.00	0	379	0	379	n	0.00	0	269	0	269	n	0.00	0	362	0	362	n	ENSMUSG00000029152.14	Ociad1	chr5	protein_coding	OCIA domain containing 1
known_NIR_15018	chr5	73464096	73470786	+	73464096	73467617	3pMXE	ENSMUST00000202237.4	known	0.03	15	439	15	439	y	0.04	18	445	18	445	y	0.03	16	493	16	493	y	0.04	22	484	22	484	y	0.02	12	480	12	480	y	0.02	6	283	6	283	y	0.04	21	579	21	579	y	0.03	9	266	9	266	y	0.03	13	376	13	376	y	0.02	13	517	13	517	y	0.04	17	409	17	409	y	0.04	18	466	18	466	y	ENSMUSG00000029152.14	Ociad1	chr5	protein_coding	OCIA domain containing 1
known_NIR_15019	chr5	73464096	73470786	+	73464096;73467769	73467617;73470786	ES	ENSMUST00000031038.11	known	0.04	15	380.5	15	439;322	y	0.04	18	420.0	18	445;395	y	0.03	16	454.5	16	493;416	y	0.05	22	433.0	22	484;382	y	0.03	12	449.0	12	480;418	y	0.02	6	259.0	6	283;235	y	0.04	21	497.5	21	579;416	y	0.03	9	263.5	9	266;261	y	0.04	13	340.0	13	376;304	y	0.03	13	483.0	13	517;449	y	0.04	17	397.5	17	409;386	y	0.04	18	437.5	18	466;409	y	ENSMUSG00000029152.14	Ociad1	chr5	protein_coding	OCIA domain containing 1
known_NIR_15020	chr5	73464096	73470786	+	73464141	73470786	A5SS	ENSMUST00000071081.13	known	0.75	15	5	15	5	y	0.58	18	13	18	13	y	0.89	16	2	16	2	y	0.81	22	5	22	5	y	0.57	12	9	12	9	y	0.75	6	2	6	2	n	0.58	21	15	21	15	y	0.82	9	2	9	2	y	0.65	13	7	13	7	y	0.68	13	6	13	6	y	0.61	17	11	17	11	y	0.69	18	8	18	8	y	ENSMUSG00000029152.14	Ociad1	chr5	protein_coding	OCIA domain containing 1
known_NIR_15021	chr5	73467769	73470786	+	73464141	73470786	A5SS	ENSMUST00000071081.13	known	0.98	322	5	322	5	y	0.97	395	13	395	13	y	1.00	416	2	416	2	y	0.99	382	5	382	5	y	0.98	418	9	418	9	y	0.99	235	2	235	2	y	0.97	416	15	416	15	y	0.99	261	2	261	2	y	0.98	304	7	304	7	y	0.99	449	6	449	6	y	0.97	386	11	386	11	y	0.98	409	8	409	8	y	ENSMUSG00000029152.14	Ociad1	chr5	protein_coding	OCIA domain containing 1
known_NIR_15022	chr5	73481190	73485006	-	73481190;73483741	73483624;73485006	ES	ENSMUST00000200830.4	known	0.00	0	125.0	0	164;86	n	0.00	0	97.5	0	119;76	n	0.00	0	17.5	0	19;16	n	0.02	2	115.0	2	125;105	y	0.00	0	119.0	0	142;96	n	0.00	0	14.5	0	23;6	n	0.00	0	151.0	0	184;118	n	0.02	1	41.5	1	50;33	n	0.00	0	106.5	0	129;84	n	0.00	0	188.5	0	228;149	n	0.00	0	134.0	0	146;122	n	0.00	0	168.5	0	210;127	n	ENSMUSG00000029153.12	Ociad2	chr5	protein_coding	OCIA domain containing 2
known_NIR_15023	chr5	73489543	73495874	-	73489543	73493163	A5SS&ES	ENSMUST00000200821.2	known	0.01	2	160	2	160	y	0.00	0	101	0	101	n	0.00	0	23	0	23	n	0.02	3	164	3	164	y	0.04	5	130	5	130	y	0.00	0	33	0	33	n	0.03	5	149	5	149	y	0.06	3	44	3	44	y	0.02	3	148	3	148	y	0.01	2	191	2	191	y	0.04	5	129	5	129	y	0.02	5	199	5	199	y	ENSMUSG00000029153.12	Ociad2	chr5	protein_coding	OCIA domain containing 2
known_NIR_15024	chr5	73489543;73493288	73493163;73495874	-	73489543	73495874	cassetteExon	ENSMUST00000200830.4	known	0.99	132.0	2	160;104	2	y	1.00	91.0	0	101;81	0	n	1.00	20.0	0	23;17	0	n	0.98	151.0	3	164;138	3	y	0.96	129.0	5	130;128	5	y	1.00	29.0	0	33;25	0	n	0.96	131.5	5	149;114	5	y	0.92	36.5	3	44;29	3	y	0.98	130.5	3	148;113	3	y	0.99	182.5	2	191;174	2	y	0.96	122.0	5	129;115	5	y	0.97	173.0	5	199;147	5	y	ENSMUSG00000029153.12	Ociad2	chr5	protein_coding	OCIA domain containing 2
known_NIR_15025	chr5	73648877	73668229	+	73648534	73668229	A5SS	ENSMUST00000113558.8	known	0.03	1	30	1	30	n	0.00	0	14	0	14	n	0.00	0	45	0	45	n	0.00	0	49	0	49	n	0.00	0	73	0	73	n	0.00	0	42	0	42	n	0.00	0	49	0	49	n	0.02	1	41	1	41	n	0.00	0	32	0	32	n	0.09	4	43	4	43	y	0.00	0	22	0	22	n	0.02	1	49	1	49	n	ENSMUSG00000051674.16	Dcun1d4	chr5	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)
known_NIR_15026	chr5	73660111	73668229	+	73648534	73668229	A5SS	ENSMUST00000113558.8	known	0.00	0	30	0	30	n	0.00	0	14	0	14	n	0.00	0	45	0	45	n	0.00	0	49	0	49	n	0.00	0	73	0	73	n	0.00	0	42	0	42	n	0.00	0	49	0	49	n	0.00	0	41	0	41	n	0.00	0	32	0	32	n	0.04	2	43	2	43	y	0.00	0	22	0	22	n	0.00	0	49	0	49	n	ENSMUSG00000051674.16	Dcun1d4	chr5	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)
known_NIR_15027	chr5	73668107	73668229	+	73648534	73668229	A5SS	ENSMUST00000113558.8	known	0.03	1	30	1	30	n	0.00	0	14	0	14	n	0.02	1	45	1	45	n	0.14	8	49	8	49	y	0.01	1	73	1	73	n	0.00	0	42	0	42	n	0.00	0	49	0	49	n	0.00	0	41	0	41	n	0.00	0	32	0	32	n	0.10	5	43	5	43	y	0.00	0	22	0	22	n	0.00	0	49	0	49	n	ENSMUSG00000051674.16	Dcun1d4	chr5	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)
known_NIR_15028	chr5	73677573;73678387	73678258;73679996	+	73677573	73679996	cassetteExon	ENSMUST00000087181.12	known	0.02	0.5	24	1;0	24	n	0.00	0.0	13	0;0	13	n	0.08	4.0	45	4;4	45	y	0.01	0.5	46	0;1	46	n	0.01	0.5	70	0;1	70	n	0.07	2.0	27	3;1	27	n	0.04	2.0	54	3;1	54	n	0.03	1.0	38	2;0	38	n	0.00	0.0	28	0;0	28	n	0.01	1.0	74	2;0	74	n	0.00	0.0	33	0;0	33	n	0.05	2.0	36	2;2	36	y	ENSMUSG00000051674.16	Dcun1d4	chr5	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)
known_NIR_15029	chr5	73692040	73712702	+	73692040;73701498	73701390;73712702	ES	ENSMUST00000087181.12	known	0.00	0	34.0	0	36;32	n	0.00	0	26.0	0	33;19	n	0.00	0	59.5	0	78;41	n	0.00	0	59.0	0	78;40	n	0.02	2	80.5	2	91;70	y	0.00	0	39.5	0	41;38	n	0.00	0	40.0	0	35;45	n	0.02	1	52.5	1	67;38	n	0.00	0	38.5	0	49;28	n	0.01	1	77.5	1	84;71	n	0.00	0	29.5	0	31;28	n	0.03	2	61.5	2	66;57	y	ENSMUSG00000051674.16	Dcun1d4	chr5	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)
known_NIR_15030	chr5	73692040;73701498	73701390;73714597	+	73692040;73712806	73712702;73714597	MXE	ENSMUST00000130087.8	known	0.55	20.5	16.5	36;5	0;33	n	0.49	16.5	17.0	33;0	0;34	n	0.59	45.0	31.0	78;12	0;62	n	0.56	41.5	33.0	78;5	0;66	n	0.55	48.5	39.5	91;6	2;77	y	0.56	22.5	18.0	41;4	0;36	n	0.36	18.5	32.5	35;2	0;65	n	0.65	36.0	19.5	67;5	1;38	n	0.68	25.0	11.5	49;1	0;23	n	0.50	44.0	44.0	84;4	1;87	n	0.51	17.0	16.5	31;3	0;33	n	0.56	34.5	27.5	66;3	2;53	y	ENSMUSG00000051674.16	Dcun1d4	chr5	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)
known_NIR_15031	chr5	73701498	73714597	+	73701498;73712806	73712702;73714597	ES	ENSMUST00000087181.12	known	0.13	5	32.5	5	32;33	y	0.00	0	26.5	0	19;34	n	0.19	12	51.5	12	41;62	y	0.09	5	53.0	5	40;66	y	0.08	6	73.5	6	70;77	y	0.10	4	37.0	4	38;36	y	0.04	2	55.0	2	45;65	y	0.12	5	38.0	5	38;38	y	0.04	1	25.5	1	28;23	n	0.05	4	79.0	4	71;87	y	0.09	3	30.5	3	28;33	y	0.05	3	55.0	3	57;53	y	ENSMUSG00000051674.16	Dcun1d4	chr5	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)
known_NIR_15032	chr5	74619303	74623221	-	74558564	74623221	A3SS	ENSMUST00000072857.13	known	0.00	0	8	0	8	n	0.17	3	15	3	15	y	0.08	2	22	2	22	y	0.11	2	16	2	16	y	0.14	4	24	4	24	y	0.17	2	10	2	10	y	0.05	1	19	1	19	n	0.05	1	20	1	20	n	0.00	0	7	0	7	n	0.07	1	13	1	13	n	0.00	0	13	0	13	n	0.13	3	20	3	20	y	ENSMUSG00000062110.15	Scfd2	chr5	protein_coding	Sec1 family domain containing 2
known_NIR_15033	chr5	74676837	74680145	-	74642938	74680145	A3SS	ENSMUST00000072857.13	known	0.00	0	15	0	15	n	0.00	0	23	0	23	n	0.05	2	38	2	38	y	0.00	0	27	0	27	n	0.00	0	38	0	38	n	0.00	0	26	0	26	n	0.00	0	31	0	31	n	0.00	0	20	0	20	n	0.00	0	8	0	8	n	0.00	0	21	0	21	n	0.07	2	25	2	25	y	0.00	0	31	0	31	n	ENSMUSG00000062110.15	Scfd2	chr5	protein_coding	Sec1 family domain containing 2
known_NIR_15034	chr5	74696422	74697603	+	74696422;74697506	74697462;74697603	ES	ENSMUST00000080164.12	known	0.04	1	27.0	1	27;27	n	0.00	0	19.0	0	17;21	n	0.04	2	52.5	2	44;61	y	0.00	0	29.0	0	23;35	n	0.00	0	36.0	0	28;44	n	0.00	0	20.0	0	15;25	n	0.04	1	23.5	1	21;26	n	0.00	0	23.5	0	24;23	n	0.00	0	26.5	0	18;35	n	0.00	0	26.5	0	22;31	n	0.00	0	29.0	0	27;31	n	0.00	0	28.5	0	22;35	n	ENSMUSG00000029227.16	Fip1l1	chr5	protein_coding	FIP1 like 1 (S. cerevisiae)
known_NIR_15035	chr5	74696422	74697603	+	74697506	74697603	A5SS	ENSMUST00000135377.3	known	0.04	1	27	1	27	n	0.00	0	21	0	21	n	0.03	2	61	2	61	y	0.00	0	35	0	35	n	0.00	0	44	0	44	n	0.00	0	25	0	25	n	0.04	1	26	1	26	n	0.00	0	23	0	23	n	0.00	0	35	0	35	n	0.00	0	31	0	31	n	0.00	0	31	0	31	n	0.00	0	35	0	35	n	ENSMUSG00000029227.16	Fip1l1	chr5	protein_coding	FIP1 like 1 (S. cerevisiae)
known_NIR_15036	chr5	74707486;74707836	74707768;74717701	+	74707486	74717701	cassetteExon	ENSMUST00000080164.12	known	0.17	5.5	27	6;5	27	y	0.19	5.5	23	6;5	23	y	0.20	10.0	39	9;11	39	y	0.23	11.0	36	11;11	36	y	0.14	7.5	48	3;12	48	y	0.11	1.5	12	2;1	12	n	0.12	8.5	60	10;7	60	y	0.17	4.0	19	4;4	19	y	0.14	5.5	35	8;3	35	y	0.22	11.0	39	10;12	39	y	0.20	8.5	35	6;11	35	y	0.17	8.5	43	7;10	43	y	ENSMUSG00000029227.16	Fip1l1	chr5	protein_coding	FIP1 like 1 (S. cerevisiae)
known_NIR_15037	chr5	74717810;74725287	74725180;74731760	+	74717810	74731760	cassetteExon	ENSMUST00000080164.12	known	0.26	9.0	25	8;10	25	y	0.29	7.0	17	8;6	17	y	0.41	20.5	30	28;13	30	y	0.26	10.0	28	12;8	28	y	0.25	16.0	47	18;14	47	y	0.55	12.0	10	10;14	10	y	0.27	13.5	36	18;9	36	y	0.41	12.5	18	14;11	18	y	0.23	6.5	22	7;6	22	y	0.30	12.5	29	15;10	29	y	0.35	11.5	21	12;11	21	y	0.38	19.5	32	21;18	32	y	ENSMUSG00000029227.16	Fip1l1	chr5	protein_coding	FIP1 like 1 (S. cerevisiae)
known_NIR_15038	chr5	74733246	74747664	+	74733246	74745707	3pMXE	ENSMUST00000121950.5	known	0.16	5	26	5	26	y	0.11	2	17	2	17	y	0.12	3	23	3	23	y	0.14	5	30	5	30	y	0.18	6	28	6	28	y	0.05	1	19	1	19	n	0.24	8	26	8	26	y	0.44	7	9	7	9	y	0.13	3	20	3	20	y	0.11	5	41	5	41	y	0.33	8	16	8	16	y	0.27	7	19	7	19	y	ENSMUSG00000029227.16	Fip1l1	chr5	protein_coding	FIP1 like 1 (S. cerevisiae)
known_NIR_15039	chr5	74733246	74747664	+	74733246;74745733	74745707;74747664	ES	ENSMUST00000080164.12	known	0.16	5	25.5	5	26;25	y	0.09	2	21.0	2	17;25	y	0.12	3	22.5	3	23;22	y	0.14	5	29.5	5	30;29	y	0.18	6	28.0	6	28;28	y	0.05	1	20.0	1	19;21	n	0.21	8	30.0	8	26;34	y	0.45	7	8.5	7	9;8	y	0.13	3	19.5	3	20;19	y	0.12	5	37.0	5	41;33	y	0.33	8	16.5	8	16;17	y	0.27	7	19.0	7	19;19	y	ENSMUSG00000029227.16	Fip1l1	chr5	protein_coding	FIP1 like 1 (S. cerevisiae)
known_NIR_15040	chr5	74733246	74747664	+	74745733	74747664	5pMXE	ENSMUST00000200787.4	known	0.17	5	25	5	25	y	0.07	2	25	2	25	y	0.12	3	22	3	22	y	0.15	5	29	5	29	y	0.18	6	28	6	28	y	0.05	1	21	1	21	n	0.19	8	34	8	34	y	0.47	7	8	7	8	y	0.14	3	19	3	19	y	0.13	5	33	5	33	y	0.32	8	17	8	17	y	0.27	7	19	7	19	y	ENSMUSG00000029227.16	Fip1l1	chr5	protein_coding	FIP1 like 1 (S. cerevisiae)
known_NIR_15041	chr5	76288395	76295533	+	76288715	76295533	5pMXE	ENSMUST00000152642.8	known	1.00	15	0	15	0	n	1.00	15	0	15	0	n	1.00	22	0	22	0	n	1.00	33	0	33	0	n	1.00	25	0	25	0	n	1.00	15	0	15	0	n	1.00	37	0	37	0	n	1.00	26	0	26	0	n	0.89	16	2	16	2	y	1.00	41	0	41	0	n	0.88	15	2	15	2	y	0.96	26	1	26	1	n	ENSMUSG00000029233.16	Srd5a3	chr5	protein_coding	steroid 5 alpha-reductase 3
known_NIR_15042	chr5	76288395	76295533	+	76288830	76295533	5pMXE	ENSMUST00000127278.8	known	1.00	15	0	15	0	n	1.00	15	0	15	0	n	1.00	22	0	22	0	n	0.94	33	2	33	2	y	1.00	25	0	25	0	n	0.83	15	3	15	3	y	1.00	37	0	37	0	n	1.00	26	0	26	0	n	0.89	16	2	16	2	y	0.98	41	1	41	1	n	1.00	15	0	15	0	n	0.96	26	1	26	1	n	ENSMUSG00000029233.16	Srd5a3	chr5	protein_coding	steroid 5 alpha-reductase 3
known_NIR_15043	chr5	76352663	76353816	+	76352663	76355649	A3SS	ENSMUST00000031144.14	known	0.00	0	22	0	22	n	0.00	0	29	0	29	n	0.00	0	66	0	66	n	0.04	1	26	1	26	n	0.00	0	60	0	60	n	0.03	1	39	1	39	n	0.00	0	56	0	56	n	0.06	2	30	2	30	y	0.00	0	33	0	33	n	0.00	0	35	0	35	n	0.00	0	36	0	36	n	0.00	0	33	0	33	n	ENSMUSG00000029234.14	Tmem165	chr5	protein_coding	transmembrane protein 165
known_NIR_15044	chr5	76377407	76378012	-	76377410	76378012	A3SS	ENSMUST00000202651.4	known	0.31	4	9	4	9	y	0.09	1	10	1	10	n	0.31	13	29	13	29	y	0.35	8	15	8	15	y	0.42	23	32	23	32	y	0.40	17	25	17	25	y	0.50	12	12	12	12	y	0.40	12	18	12	18	y	0.27	6	16	6	16	y	0.33	9	18	9	18	y	0.33	7	14	7	14	y	0.42	11	15	11	15	y	ENSMUSG00000029238.12	Clock	chr5	protein_coding	circadian locomotor output cycles kaput
known_NIR_15045	chr5	76402288	76410522	-	76402310	76410522	A3SS	ENSMUST00000202651.4	known	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.00	0	19	0	19	n	0.00	0	10	0	10	n	0.14	3	18	3	18	y	0.00	0	13	0	13	n	0.00	0	24	0	24	n	0.05	1	19	1	19	n	0.27	3	8	3	8	y	0.10	1	9	1	9	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	ENSMUSG00000029238.12	Clock	chr5	protein_coding	circadian locomotor output cycles kaput
known_NIR_15046	chr5	76451349	76452215	-	76451349	76452502	A5SS	ENSMUST00000202651.4	known	0.17	1	5	1	5	n	0.25	1	3	1	3	n	0.14	3	19	3	19	y	0.50	3	3	3	3	n	0.43	6	8	6	8	y	0.25	3	9	3	9	y	0.38	5	8	5	8	y	0.11	1	8	1	8	n	0.17	1	5	1	5	n	0.16	3	16	3	16	y	0.00	0	6	0	6	n	0.00	0	8	0	8	n	ENSMUSG00000029238.12	Clock	chr5	protein_coding	circadian locomotor output cycles kaput
known_NIR_15047	chr5	76702052	76706851	+	76702052;76705710	76705666;76706851	ES	ENSMUST00000087133.11	known	0.38	6	10.0	6	10;10	y	0.62	4	2.5	4	1;4	n	0.33	2	4.0	2	5;3	y	0.46	3	3.5	3	4;3	y	0.53	8	7.0	8	8;6	y	0.73	4	1.5	4	1;2	n	0.61	7	4.5	7	4;5	y	0.18	1	4.5	1	7;2	n	0.29	3	7.5	3	10;5	y	0.43	10	13.0	10	13;13	y	0.67	4	2.0	4	2;2	n	0.64	9	5.0	9	7;3	y	ENSMUSG00000036435.14	Exoc1	chr5	protein_coding	exocyst complex component 1
known_NIR_15048	chr5	77024269	77025374	-	77024269	77024389	5pMXE	ENSMUST00000145022.2	known	0.71	10	4	10	4	y	0.70	7	3	7	3	y	1.00	5	0	5	0	n	0.83	5	1	5	1	n	0.68	13	6	13	6	y	0.50	3	3	3	3	n	1.00	9	0	9	0	n	1.00	5	0	5	0	n	1.00	5	0	5	0	n	0.94	15	1	15	1	n	0.92	12	1	12	1	n	0.89	8	1	8	1	n	ENSMUSG00000055923.17	Aasdh	chr5	protein_coding	aminoadipate-semialdehyde dehydrogenase
known_NIR_15049	chr5	77024269	77025374	-	77024525	77025374	A3SS&ES	ENSMUST00000123682.8	known	1.00	10	0	10	0	n	0.78	7	2	7	2	n	1.00	5	0	5	0	n	0.56	5	4	5	4	n	1.00	13	0	13	0	n	1.00	3	0	3	0	n	1.00	9	0	9	0	n	1.00	5	0	5	0	n	0.83	5	1	5	1	n	0.88	15	2	15	2	y	1.00	12	0	12	0	n	1.00	8	0	8	0	n	ENSMUSG00000055923.17	Aasdh	chr5	protein_coding	aminoadipate-semialdehyde dehydrogenase
known_NIR_15050	chr5	77024269;77024525	77024389;77025374	-	77024269	77025374	cassetteExon	ENSMUST00000120963.8	known	0.17	2.0	10	4;0	10	n	0.26	2.5	7	3;2	7	y	0.00	0.0	5	0;0	5	n	0.33	2.5	5	1;4	5	n	0.19	3.0	13	6;0	13	n	0.33	1.5	3	3;0	3	n	0.00	0.0	9	0;0	9	n	0.00	0.0	5	0;0	5	n	0.09	0.5	5	0;1	5	n	0.09	1.5	15	1;2	15	n	0.04	0.5	12	1;0	12	n	0.06	0.5	8	1;0	8	n	ENSMUSG00000055923.17	Aasdh	chr5	protein_coding	aminoadipate-semialdehyde dehydrogenase
known_NIR_15051	chr5	77039642	77044224	-	77039642;77042209	77042137;77044224	ES	ENSMUST00000123682.8	known	1.00	8	0.0	8	0;0	n	1.00	4	0.0	4	0;0	n	1.00	10	0.0	10	0;0	n	1.00	10	0.0	10	0;0	n	0.78	9	2.5	9	2;3	y	0.88	7	1.0	7	1;1	n	0.91	5	0.5	5	1;0	n	1.00	9	0.0	9	0;0	n	0.67	2	1.0	2	2;0	n	0.92	12	1.0	12	1;1	n	0.75	6	2.0	6	4;0	n	0.90	13	1.5	13	2;1	n	ENSMUSG00000055923.17	Aasdh	chr5	protein_coding	aminoadipate-semialdehyde dehydrogenase
known_NIR_15052	chr5	77052227	77053270	-	77052227	77052806	A5SS	ENSMUST00000134805.2	known	0.40	4	6	4	6	y	0.55	6	5	6	5	y	0.23	3	10	3	10	y	0.60	6	4	6	4	y	0.42	5	7	5	7	y	0.00	0	6	0	6	n	0.54	7	6	7	6	y	0.40	6	9	6	9	y	0.50	5	5	5	5	y	0.33	3	6	3	6	n	0.38	3	5	3	5	n	0.00	0	6	0	6	n	ENSMUSG00000055923.17	Aasdh	chr5	protein_coding	aminoadipate-semialdehyde dehydrogenase
known_NIR_15053	chr5	77052227;77052859	77052806;77053270	-	77052227	77053270	cassetteExon	ENSMUST00000123682.8	known	0.50	4.0	4	6;2	4	y	0.29	2.5	6	5;0	6	n	0.67	6.0	3	10;2	3	y	0.33	3.0	6	4;2	6	y	0.50	5.0	5	7;3	5	y	1.00	4.5	0	6;3	0	n	0.42	5.0	7	6;4	7	y	0.50	6.0	6	9;3	6	y	0.41	3.5	5	5;2	5	y	0.50	3.0	3	6;0	3	n	0.54	3.5	3	5;2	3	y	1.00	3.5	0	6;1	0	n	ENSMUSG00000055923.17	Aasdh	chr5	protein_coding	aminoadipate-semialdehyde dehydrogenase
known_NIR_15054	chr5	77099248	77099616	+	77099515	77099616	A5SS	ENSMUST00000120912.8	known	0.62	5	3	5	3	n	0.43	3	4	3	4	n	0.30	9	21	9	21	y	0.53	9	8	9	8	y	0.47	9	10	9	10	y	1.00	4	0	4	0	n	0.78	7	2	7	2	n	0.18	2	9	2	9	y	0.70	7	3	7	3	y	0.53	8	7	8	7	y	0.40	2	3	2	3	n	0.64	7	4	7	4	y	ENSMUSG00000029247.18	Paics	chr5	protein_coding	phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase
known_NIR_15055	chr5	77099349	77099616	+	77099248	77099616	A5SS	ENSMUST00000117536.8	known	0.00	0	5	0	5	n	0.40	2	3	2	3	n	0.10	1	9	1	9	n	0.00	0	9	0	9	n	0.40	6	9	6	9	y	0.20	1	4	1	4	n	0.12	1	7	1	7	n	0.33	1	2	1	2	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.33	1	2	1	2	n	0.22	2	7	2	7	n	ENSMUSG00000029247.18	Paics	chr5	protein_coding	phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase
known_NIR_15056	chr5	77099349	77099616	+	77099515	77099616	A5SS	ENSMUST00000120912.8	known	0.00	0	3	0	3	n	0.33	2	4	2	4	n	0.05	1	21	1	21	n	0.00	0	8	0	8	n	0.38	6	10	6	10	y	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.10	1	9	1	9	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.25	1	3	1	3	n	0.33	2	4	2	4	n	ENSMUSG00000029247.18	Paics	chr5	protein_coding	phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase
known_NIR_15057	chr5	77104693	77107162	+	77104590	77107162	A5SS	ENSMUST00000031160.16	known	0.00	0	363	0	363	n	0.00	0	249	0	249	n	0.00	2	567	2	567	y	0.00	0	504	0	504	n	0.00	0	421	0	421	n	0.00	0	142	0	142	n	0.00	2	419	2	419	y	0.00	1	257	1	257	n	0.00	0	385	0	385	n	0.01	4	577	4	577	y	0.00	0	418	0	418	n	0.01	4	643	4	643	y	ENSMUSG00000029247.18	Paics	chr5	protein_coding	phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase
known_NIR_15058	chr5	77145429;77145944	77145863;77146039	+	77145429	77146039	cassetteExon	ENSMUST00000101087.10	known	0.03	5.0	187	6;4	187	y	0.01	1.0	172	0;2	172	n	0.01	3.5	292	3;4	292	y	0.00	0.5	203	0;1	203	n	0.00	1.0	244	0;2	244	n	0.02	3.0	179	4;2	179	y	0.01	2.5	176	1;4	176	n	0.01	2.0	202	3;1	202	n	0.02	2.0	126	3;1	126	n	0.01	1.0	185	0;2	185	n	0.01	1.5	173	3;0	173	n	0.02	4.0	197	3;5	197	y	ENSMUSG00000036323.15	Srp72	chr5	protein_coding	signal recognition particle 72
known_NIR_15059	chr5	77242869	77262694	-	77242869	77242998	5pMXE	ENSMUST00000113453.9	known	0.00	0	226	0	226	n	0.00	0	249	0	249	n	0.00	0	248	0	248	n	0.01	1	186	1	186	n	0.00	1	364	1	364	n	0.00	0	259	0	259	n	0.00	1	372	1	372	n	0.00	1	276	1	276	n	0.01	2	219	2	219	y	0.00	0	246	0	246	n	0.01	2	205	2	205	y	0.00	0	170	0	170	n	ENSMUSG00000059325.15	Hopx	chr5	protein_coding	HOP homeobox
known_NIR_15060	chr5	77451672	77452033	-	77447621	77452033	A3SS	ENSMUST00000047860.9	known	0.00	0	40	0	40	n	0.00	0	40	0	40	n	0.06	2	31	2	31	y	0.02	1	58	1	58	n	0.00	0	46	0	46	n	0.00	0	17	0	17	n	0.02	1	52	1	52	n	0.08	1	11	1	11	n	0.03	1	37	1	37	n	0.03	2	57	2	57	y	0.03	1	36	1	36	n	0.05	2	42	2	42	y	ENSMUSG00000036285.11	Noa1	chr5	protein_coding	nitric oxide associated 1
known_NIR_15061	chr5	8113000	8113260	+	8112427	8113260	A5SS	ENSMUST00000088786.11	known	0.00	0	115	0	115	n	0.03	3	107	3	107	y	0.01	1	105	1	105	n	0.00	0	136	0	136	n	0.02	3	124	3	124	y	0.03	2	65	2	65	y	0.04	6	129	6	129	y	0.02	2	80	2	80	y	0.03	3	106	3	106	y	0.01	1	121	1	121	n	0.01	1	115	1	115	n	0.02	3	125	3	125	y	ENSMUSG00000003161.16	Sri	chr5	protein_coding	sorcin
known_NIR_15062	chr5	8454916	8455802	-	8454913	8455802	A3SS	ENSMUST00000002368.16	known	0.60	3	2	3	2	n	1.00	1	0	1	0	n	0.80	16	4	16	4	y	1.00	5	0	5	0	n	0.89	8	1	8	1	n	1.00	3	0	3	0	n	0.83	5	1	5	1	n	1.00	3	0	3	0	n	0.83	5	1	5	1	n	1.00	11	0	11	0	n	1.00	7	0	7	0	n	0.75	6	2	6	2	n	ENSMUSG00000002297.17	Dbf4	chr5	protein_coding	DBF4 zinc finger
known_NIR_15063	chr5	86952450;86957199	86957164;86963488	+	86952450	86963488	cassetteExon	ENSMUST00000119339.8	known	0.16	1.5	8	0;3	8	n	0.47	3.5	4	3;4	4	y	0.24	6.0	19	4;8	19	y	0.64	17.5	10	14;21	10	y	0.53	16.0	14	16;16	14	y	0.27	3.0	8	2;4	8	y	0.58	5.5	4	2;9	4	y	0.40	4.0	6	3;5	6	y	0.53	4.5	4	3;6	4	y	0.43	6.0	8	4;8	8	y	0.64	3.5	2	5;2	2	n	0.51	11.5	11	10;13	11	y	ENSMUSG00000035851.15	Ythdc1	chr5	protein_coding	YTH domain containing 1
known_NIR_15064	chr5	86968034;86968545	86968492;86969111	+	86968034	86969111	cassetteExon	ENSMUST00000119339.8	known	1.00	32.0	0	35;29	0	n	1.00	33.5	0	39;28	0	n	1.00	46.0	0	47;45	0	n	1.00	28.0	0	29;27	0	n	0.98	57.0	1	60;54	1	n	0.96	23.5	1	22;25	1	n	1.00	33.5	0	35;32	0	n	1.00	21.5	0	23;20	0	n	0.96	22.5	1	21;24	1	n	0.95	40.5	2	40;41	2	y	1.00	17.5	0	19;16	0	n	0.98	42.5	1	41;44	1	n	ENSMUSG00000035851.15	Ythdc1	chr5	protein_coding	YTH domain containing 1
known_NIR_15065	chr5	86977338	86978413	+	86975980	86978413	A5SS	ENSMUST00000119339.8	known	0.24	6	19	6	19	y	0.07	2	27	2	27	y	0.32	15	32	15	32	y	0.10	3	28	3	28	y	0.20	8	33	8	33	y	0.18	3	14	3	14	y	0.11	7	54	7	54	y	0.15	4	23	4	23	y	0.30	6	14	6	14	y	0.16	6	31	6	31	y	0.15	4	23	4	23	y	0.22	10	36	10	36	y	ENSMUSG00000035851.15	Ythdc1	chr5	protein_coding	YTH domain containing 1
known_NIR_15066	chr5	86979559	86979632	+	86979559	86979656	A3SS	ENSMUST00000119339.8	known	0.41	23	33	23	33	y	0.32	12	26	12	26	y	0.32	14	30	14	30	y	0.30	15	35	15	35	y	0.32	16	34	16	34	y	0.21	6	23	6	23	y	0.30	17	40	17	40	y	0.31	15	33	15	33	y	0.20	7	28	7	28	y	0.23	14	46	14	46	y	0.30	6	14	6	14	y	0.31	16	35	16	35	y	ENSMUSG00000035851.15	Ythdc1	chr5	protein_coding	YTH domain containing 1
known_NIR_15067	chr5	87239705	87240084	-	87239705	87240303	A5SS	ENSMUST00000145617.8	known	0.32	12	25	12	25	y	0.13	7	45	7	45	y	0.10	1	9	1	9	n	0.20	10	40	10	40	y	0.21	10	37	10	37	y	0.08	1	11	1	11	n	0.18	8	36	8	36	y	0.14	4	24	4	24	y	0.11	8	67	8	67	y	0.15	13	74	13	74	y	0.16	14	71	14	71	y	0.13	13	84	13	84	y	ENSMUSG00000070704.11	Ugt2b36	chr5	protein_coding	UDP glucuronosyltransferase 2 family, polypeptide B36
known_NIR_15068	chr5	87682955	87683956	-	87682955	87685964	A5SS	ENSMUST00000031199.11	known	0.14	4	25	4	25	y	0.04	1	23	1	23	n	0.33	4	8	4	8	y	0.05	2	37	2	37	y	0.29	16	39	16	39	y	0.23	3	10	3	10	y	0.13	8	53	8	53	y	0.20	5	20	5	20	y	0.08	4	44	4	44	y	0.15	11	61	11	61	y	0.02	1	51	1	51	n	0.12	5	38	5	38	y	ENSMUSG00000029269.12	Sult1b1	chr5	protein_coding	sulfotransferase family 1B, member 1
known_NIR_15069	chr5	88732176	88762800	+	88713335	88762800	A5SS	ENSMUST00000196894.5	known	0.00	0	20	0	20	n	0.25	2	6	2	6	n	0.03	1	36	1	36	n	0.00	0	23	0	23	n	0.06	2	32	2	32	y	0.00	0	15	0	15	n	0.00	0	19	0	19	n	0.00	0	9	0	9	n	0.00	0	23	0	23	n	0.03	1	31	1	31	n	0.00	0	19	0	19	n	0.11	3	24	3	24	y	ENSMUSG00000029291.12	Rufy3	chr5	protein_coding	RUN and FYVE domain containing 3
known_NIR_15070	chr5	88746348	88762800	+	88713335	88762800	A5SS	ENSMUST00000196894.5	known	0.13	3	20	3	20	y	0.25	2	6	2	6	n	0.00	0	36	0	36	n	0.04	1	23	1	23	n	0.00	0	32	0	32	n	0.00	0	15	0	15	n	0.00	0	19	0	19	n	0.00	0	9	0	9	n	0.12	3	23	3	23	y	0.06	2	31	2	31	y	0.00	0	19	0	19	n	0.00	0	24	0	24	n	ENSMUSG00000029291.12	Rufy3	chr5	protein_coding	RUN and FYVE domain containing 3
known_NIR_15071	chr5	88786937	88790788	+	88786937	88788448	3pMXE	ENSMUST00000196894.5	known	1.00	47	0	47	0	n	1.00	37	0	37	0	n	1.00	47	0	47	0	n	0.94	49	3	49	3	y	1.00	66	0	66	0	n	0.91	21	2	21	2	y	0.96	52	2	52	2	y	1.00	34	0	34	0	n	0.98	46	1	46	1	n	0.94	65	4	65	4	y	1.00	52	0	52	0	n	1.00	61	0	61	0	n	ENSMUSG00000029291.12	Rufy3	chr5	protein_coding	RUN and FYVE domain containing 3
known_NIR_15072	chr5	88821708	88822979	-	88821708	88823617	A5SS	ENSMUST00000078945.12	known	0.00	0	65	0	65	n	0.00	0	46	0	46	n	0.00	0	67	0	67	n	0.00	0	118	0	118	n	0.00	0	109	0	109	n	0.04	2	51	2	51	y	0.00	0	59	0	59	n	0.00	0	42	0	42	n	0.00	0	55	0	55	n	0.00	0	106	0	106	n	0.00	0	63	0	63	n	0.00	0	120	0	120	n	ENSMUSG00000044221.15	Grsf1	chr5	protein_coding	G-rich RNA sequence binding factor 1
known_NIR_15073	chr5	88821708	88823354	-	88821708	88823617	A5SS	ENSMUST00000078945.12	known	0.11	8	65	8	65	y	0.06	3	46	3	46	y	0.11	8	67	8	67	y	0.09	12	118	12	118	y	0.13	16	109	16	109	y	0.04	2	51	2	51	y	0.12	8	59	8	59	y	0.09	4	42	4	42	y	0.14	9	55	9	55	y	0.12	15	106	15	106	y	0.23	19	63	19	63	y	0.10	13	120	13	120	y	ENSMUSG00000044221.15	Grsf1	chr5	protein_coding	G-rich RNA sequence binding factor 1
known_NIR_15074	chr5	88821708	88823405	-	88821708	88823354	A5SS	ENSMUST00000113234.8	known	0.20	2	8	2	8	y	0.40	2	3	2	3	n	0.27	3	8	3	8	y	0.25	4	12	4	12	y	0.16	3	16	3	16	y	0.00	0	2	0	2	n	0.50	8	8	8	8	y	0.20	1	4	1	4	n	0.31	4	9	4	9	y	0.29	6	15	6	15	y	0.17	4	19	4	19	y	0.24	4	13	4	13	y	ENSMUSG00000044221.15	Grsf1	chr5	protein_coding	G-rich RNA sequence binding factor 1
known_NIR_15075	chr5	88821708	88823405	-	88821708	88823617	A5SS	ENSMUST00000078945.12	known	0.03	2	65	2	65	y	0.04	2	46	2	46	y	0.04	3	67	3	67	y	0.03	4	118	4	118	y	0.03	3	109	3	109	y	0.00	0	51	0	51	n	0.12	8	59	8	59	y	0.02	1	42	1	42	n	0.07	4	55	4	55	y	0.05	6	106	6	106	y	0.06	4	63	4	63	y	0.03	4	120	4	120	y	ENSMUSG00000044221.15	Grsf1	chr5	protein_coding	G-rich RNA sequence binding factor 1
known_NIR_15076	chr5	88891329	88892916	+	88891329	88892901	A3SS	ENSMUST00000113229.8	known	1.00	19	0	19	0	n	1.00	26	0	26	0	n	0.97	62	2	62	2	y	1.00	50	0	50	0	n	1.00	52	0	52	0	n	1.00	25	0	25	0	n	1.00	32	0	32	0	n	1.00	38	0	38	0	n	1.00	24	0	24	0	n	1.00	33	0	33	0	n	1.00	24	0	24	0	n	1.00	40	0	40	0	n	ENSMUSG00000006262.16	Mob1b	chr5	protein_coding	MOB kinase activator 1B
known_NIR_15077	chr5	89194224	89232501	+	89194251	89232501	A5SS	ENSMUST00000148750.8	known	0.07	1	14	1	14	n	0.25	2	6	2	6	n	0.22	23	82	23	82	y	0.24	6	19	6	19	y	0.26	14	40	14	40	y	0.27	18	48	18	48	y	0.15	6	33	6	33	y	0.11	6	50	6	50	y	0.13	2	13	2	13	y	0.26	11	32	11	32	y	0.25	5	15	5	15	y	0.23	10	33	10	33	y	ENSMUSG00000060961.17	Slc4a4	chr5	protein_coding	solute carrier family 4 (anion exchanger), member 4
known_NIR_15078	chr5	89194224	89232501	+	89205903	89232501	A5SS&ES	ENSMUST00000239214.2	known	0.25	1	3	1	3	n	0.40	2	3	2	3	n	0.85	23	4	23	4	y	0.86	6	1	6	1	n	0.74	14	5	14	5	y	1.00	18	0	18	0	n	0.60	6	4	6	4	y	0.86	6	1	6	1	n	0.50	2	2	2	2	n	0.85	11	2	11	2	y	0.71	5	2	5	2	n	1.00	10	0	10	0	n	ENSMUSG00000060961.17	Slc4a4	chr5	protein_coding	solute carrier family 4 (anion exchanger), member 4
known_NIR_15079	chr5	89194251	89232501	+	89194251;89205903	89205808;89232501	ES	ENSMUST00000239214.2	known	0.88	14	2.0	14	1;3	n	0.75	6	2.0	6	1;3	n	0.93	82	6.0	82	8;4	y	0.95	19	1.0	19	1;1	n	0.91	40	4.0	40	3;5	y	0.99	48	0.5	48	1;0	n	0.90	33	3.5	33	3;4	y	0.95	50	2.5	50	4;1	n	0.93	13	1.0	13	0;2	n	0.94	32	2.0	32	2;2	y	0.91	15	1.5	15	1;2	n	0.96	33	1.5	33	3;0	n	ENSMUSG00000060961.17	Slc4a4	chr5	protein_coding	solute carrier family 4 (anion exchanger), member 4
known_NIR_15080	chr5	8943907	8946573	+	8943907;8944164	8944088;8946573	ES	ENSMUST00000003717.13	known	0.00	0	47.5	0	29;66	n	0.00	0	27.5	0	17;38	n	0.02	2	83.0	2	50;116	y	0.00	0	102.5	0	42;163	n	0.00	0	115.0	0	47;183	n	0.06	3	46.0	3	15;77	y	0.00	0	95.0	0	38;152	n	0.00	0	57.0	0	19;95	n	0.00	0	58.0	0	28;88	n	0.02	2	130.5	2	45;216	y	0.00	0	66.0	0	20;112	n	0.00	0	64.0	0	23;105	n	ENSMUSG00000042476.13	Abcb4	chr5	protein_coding	ATP-binding cassette, sub-family B (MDR/TAP), member 4
known_NIR_15081	chr5	8943907	8946573	+	8944164	8946573	5pMXE	ENSMUST00000196067.2	known	0.00	0	66	0	66	n	0.00	0	38	0	38	n	0.02	2	116	2	116	y	0.00	0	163	0	163	n	0.00	0	183	0	183	n	0.04	3	77	3	77	y	0.00	0	152	0	152	n	0.00	0	95	0	95	n	0.00	0	88	0	88	n	0.01	2	216	2	216	y	0.00	0	112	0	112	n	0.00	0	105	0	105	n	ENSMUSG00000042476.13	Abcb4	chr5	protein_coding	ATP-binding cassette, sub-family B (MDR/TAP), member 4
known_NIR_15082	chr5	89569787	89569917	-	89565547	89569917	A3SS	ENSMUST00000049209.13	known	0.00	62	24264	62	24264	y	0.00	60	29259	60	29259	y	0.00	29	20205	29	20205	y	0.00	46	20306	46	20306	y	0.00	76	29571	76	29571	y	0.00	27	12878	27	12878	y	0.00	86	28391	86	28391	y	0.00	42	15042	42	15042	y	0.00	47	19696	47	19696	y	0.00	85	30008	85	30008	y	0.00	52	25792	52	25792	y	0.00	62	28393	62	28393	y	ENSMUSG00000035540.13	Gc	chr5	protein_coding	vitamin D binding protein
known_NIR_15083	chr5	9028291	9031767	-	9028291	9033689	A5SS	ENSMUST00000003720.5	known	0.01	9	593	9	593	y	0.01	6	538	6	538	y	0.02	25	1184	25	1184	y	0.02	15	983	15	983	y	0.02	27	1085	27	1085	y	0.03	15	554	15	554	y	0.01	11	1312	11	1312	y	0.01	7	597	7	597	y	0.01	8	641	8	641	y	0.01	17	1286	17	1286	y	0.01	8	666	8	666	y	0.01	7	855	7	855	y	ENSMUSG00000003623.5	Crot	chr5	protein_coding	carnitine O-octanoyltransferase
known_NIR_15084	chr5	90366892	90367219	-	90366895	90367219	A3SS	ENSMUST00000118816.6	known	0.43	19	25	19	25	y	0.41	17	24	17	24	y	0.43	23	31	23	31	y	0.52	15	14	15	14	y	0.48	26	28	26	28	y	0.50	20	20	20	20	y	0.38	20	32	20	32	y	0.42	10	14	10	14	y	0.31	12	27	12	27	y	0.46	24	28	24	28	y	0.27	12	33	12	33	y	0.47	20	23	20	23	y	ENSMUSG00000035505.15	Cox18	chr5	protein_coding	cytochrome c oxidase assembly protein 18
known_NIR_15085	chr5	90370194	90371475	-	90370190	90371475	A3SS	ENSMUST00000118816.6	known	0.50	17	17	17	17	y	0.31	13	29	13	29	y	0.44	20	25	20	25	y	0.50	19	19	19	19	y	0.38	18	30	18	30	y	0.34	11	21	11	21	y	0.47	23	26	23	26	y	0.58	14	10	14	10	y	0.15	4	22	4	22	y	0.27	13	35	13	35	y	0.46	19	22	19	22	y	0.38	13	21	13	21	y	ENSMUSG00000035505.15	Cox18	chr5	protein_coding	cytochrome c oxidase assembly protein 18
known_NIR_15086	chr5	90426247	90430710	-	90426250	90430710	A3SS	ENSMUST00000014421.15	known	0.45	5	6	5	6	y	1.00	1	0	1	0	n	0.24	5	16	5	16	y	0.25	1	3	1	3	n	0.46	6	7	6	7	y	0.00	0	5	0	5	n	0.12	2	15	2	15	y	0.00	0	4	0	4	n	0.33	2	4	2	4	n	0.25	4	12	4	12	y	0.20	1	4	1	4	n	0.22	2	7	2	7	n	ENSMUSG00000055204.16	Ankrd17	chr5	protein_coding	ankyrin repeat domain 17
known_NIR_15087	chr5	90426250	90430710	-	90426250	90432900	A5SS	ENSMUST00000081914.13	known	0.46	6	7	6	7	y	0.00	0	8	0	8	n	0.47	16	18	16	18	y	0.20	3	12	3	12	y	0.21	7	27	7	27	y	0.45	5	6	5	6	y	0.58	15	11	15	11	y	0.21	4	15	4	15	y	0.50	4	4	4	4	n	0.48	12	13	12	13	y	0.36	4	7	4	7	y	0.32	7	15	7	15	y	ENSMUSG00000055204.16	Ankrd17	chr5	protein_coding	ankyrin repeat domain 17
known_NIR_15088	chr5	90426250	90432900	-	90426250;90431462	90430710;90432900	ES	ENSMUST00000014421.15	known	0.54	7	6.0	7	6;6	y	0.84	8	1.5	8	0;3	n	0.57	18	13.5	18	16;11	y	0.80	12	3.0	12	3;3	y	0.73	27	10.0	27	7;13	y	0.63	6	3.5	6	5;2	y	0.47	11	12.5	11	15;10	y	0.70	15	6.5	15	4;9	y	0.44	4	5.0	4	4;6	y	0.49	13	13.5	13	12;15	y	0.67	7	3.5	7	4;3	y	0.75	15	5.0	15	7;3	y	ENSMUSG00000055204.16	Ankrd17	chr5	protein_coding	ankyrin repeat domain 17
known_NIR_15089	chr5	90426250	90432900	-	90431462	90432900	A3SS&ES	ENSMUST00000168058.7	known	0.54	7	6	7	6	y	0.73	8	3	8	3	y	0.62	18	11	18	11	y	0.80	12	3	12	3	y	0.68	27	13	27	13	y	0.75	6	2	6	2	n	0.52	11	10	11	10	y	0.62	15	9	15	9	y	0.40	4	6	4	6	y	0.46	13	15	13	15	y	0.70	7	3	7	3	y	0.83	15	3	15	3	y	ENSMUSG00000055204.16	Ankrd17	chr5	protein_coding	ankyrin repeat domain 17
known_NIR_15090	chr5	90610485	90610559	+	90609637	90610559	A5SS	ENSMUST00000031314.10	known	0.00	0	44404	0	44404	n	0.00	2	31105	2	31105	y	0.00	2	34023	2	34023	y	0.00	0	64496	0	64496	n	0.00	0	61771	0	61771	n	0.00	0	19502	0	19502	n	0.00	0	51576	0	51576	n	0.00	0	32021	0	32021	n	0.00	0	57814	0	57814	n	0.00	0	89161	0	89161	n	0.00	0	70369	0	70369	n	0.00	0	125037	0	125037	n	ENSMUSG00000029368.11	Alb	chr5	protein_coding	albumin
known_NIR_15091	chr5	90611945	90622426	+	90620543	90622426	A5SS&ES	ENSMUST00000031314.10	known	0.00	30	111562	30	111562	y	0.00	16	113945	16	113945	y	0.00	32	61714	32	61714	y	0.00	48	108239	48	108239	y	0.00	34	113275	34	113275	y	0.00	15	34653	15	34653	y	0.00	39	124131	39	124131	y	0.00	24	51306	24	51306	y	0.00	36	125909	36	125909	y	0.00	59	180780	59	180780	y	0.00	45	188881	45	188881	y	0.00	75	231263	75	231263	y	ENSMUSG00000029368.11	Alb	chr5	protein_coding	albumin
known_NIR_15092	chr5	90756832	90757574	-	90756812	90757574	A3SS	ENSMUST00000202784.4	known	0.56	9	7	9	7	y	0.80	8	2	8	2	y	0.88	7	1	7	1	n	0.73	8	3	8	3	y	0.62	16	10	16	10	y	0.50	4	4	4	4	n	0.73	8	3	8	3	y	1.00	1	0	1	0	n	1.00	9	0	9	0	n	1.00	7	0	7	0	n	0.67	6	3	6	3	n	0.71	12	5	12	5	y	ENSMUSG00000029370.11	Rassf6	chr5	protein_coding	Ras association (RalGDS/AF-6) domain family member 6
known_NIR_15093	chr5	90756832	90757574	-	90756851	90757574	A3SS	ENSMUST00000031317.10	known	0.38	9	15	9	15	y	0.36	8	14	8	14	y	0.37	7	12	7	12	y	0.28	8	21	8	21	y	0.48	16	17	16	17	y	0.57	4	3	4	3	n	0.36	8	14	8	14	y	0.08	1	12	1	12	n	0.43	9	12	9	12	y	0.29	7	17	7	17	y	0.32	6	13	6	13	y	0.28	12	31	12	31	y	ENSMUSG00000029370.11	Rassf6	chr5	protein_coding	Ras association (RalGDS/AF-6) domain family member 6
known_NIR_15094	chr5	90756851	90757574	-	90756812	90757574	A3SS	ENSMUST00000202784.4	known	0.68	15	7	15	7	y	0.88	14	2	14	2	y	0.92	12	1	12	1	n	0.88	21	3	21	3	y	0.63	17	10	17	10	y	0.43	3	4	3	4	n	0.82	14	3	14	3	y	1.00	12	0	12	0	n	1.00	12	0	12	0	n	1.00	17	0	17	0	n	0.81	13	3	13	3	y	0.86	31	5	31	5	y	ENSMUSG00000029370.11	Rassf6	chr5	protein_coding	Ras association (RalGDS/AF-6) domain family member 6
known_NIR_15095	chr5	90779465	90788441	-	90779465	90788246	5pMXE	ENSMUST00000202784.4	known	0.33	3	6	3	6	n	0.78	7	2	7	2	n	0.57	8	6	8	6	y	0.45	5	6	5	6	y	0.45	5	6	5	6	y	1.00	10	0	10	0	n	0.64	7	4	7	4	y	0.56	5	4	5	4	n	0.33	3	6	3	6	n	0.19	4	17	4	17	y	0.35	6	11	6	11	y	0.48	10	11	10	11	y	ENSMUSG00000029370.11	Rassf6	chr5	protein_coding	Ras association (RalGDS/AF-6) domain family member 6
known_NIR_15096	chr5	91079292	91094649	+	91079292	91080771	3pMXE	ENSMUST00000202781.2	known	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.18	2	9	2	9	y	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	ENSMUSG00000029376.9	Mthfd2l	chr5	protein_coding	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like
known_NIR_15097	chr5	9151395	9166480	+	9151395	9202967	A3SS	ENSMUST00000196029.5	known	1.00	287	1	287	1	n	0.99	313	2	313	2	y	0.99	246	3	246	3	y	0.99	370	2	370	2	y	0.98	383	6	383	6	y	1.00	160	0	160	0	n	0.98	428	7	428	7	y	0.97	141	5	141	5	y	0.98	320	5	320	5	y	0.99	523	4	523	4	y	1.00	412	2	412	2	y	1.00	416	2	416	2	y	ENSMUSG00000079659.6	Tmem243	chr5	protein_coding	transmembrane protein 243, mitochondrial
known_NIR_15098	chr5	9172461	9174442	-	9171937	9174442	A3SS	ENSMUST00000071921.13	known	0.00	0	28	0	28	n	0.11	2	17	2	17	y	0.00	0	37	0	37	n	0.08	2	22	2	22	y	0.00	0	41	0	41	n	0.00	0	12	0	12	n	0.05	1	18	1	18	n	0.05	1	19	1	19	n	0.00	0	29	0	29	n	0.00	0	30	0	30	n	0.10	2	19	2	19	y	0.00	0	22	0	22	n	ENSMUSG00000042508.17	Dmtf1	chr5	protein_coding	cyclin D binding myb-like transcription factor 1
known_NIR_15099	chr5	9174527	9177957	-	9174527	9176540	5pMXE	ENSMUST00000184370.2	known	0.46	13	15	13	15	y	0.50	6	6	6	6	y	0.29	7	17	7	17	y	0.18	4	18	4	18	y	0.24	7	22	7	22	y	0.50	6	6	6	6	y	0.28	5	13	5	13	y	0.31	5	11	5	11	y	0.21	6	22	6	22	y	0.25	6	18	6	18	y	0.05	1	18	1	18	n	0.19	5	21	5	21	y	ENSMUSG00000042508.17	Dmtf1	chr5	protein_coding	cyclin D binding myb-like transcription factor 1
known_NIR_15100	chr5	9174527	9177957	-	9174527;9176643	9176540;9177957	ES	ENSMUST00000184159.8	known	0.63	13	7.5	13	15;0	n	0.67	6	3.0	6	6;0	n	0.41	7	10.0	7	17;3	y	0.31	4	9.0	4	18;0	n	0.39	7	11.0	7	22;0	n	0.67	6	3.0	6	6;0	n	0.43	5	6.5	5	13;0	n	0.48	5	5.5	5	11;0	n	0.35	6	11.0	6	22;0	n	0.40	6	9.0	6	18;0	n	0.10	1	9.0	1	18;0	n	0.32	5	10.5	5	21;0	n	ENSMUSG00000042508.17	Dmtf1	chr5	protein_coding	cyclin D binding myb-like transcription factor 1
known_NIR_15101	chr5	9174527	9177957	-	9174527;9176749	9176540;9177957	ES	ENSMUST00000071921.13	known	0.53	13	11.5	13	15;8	y	0.52	6	5.5	6	6;5	y	0.35	7	13.0	7	17;9	y	0.25	4	12.0	4	18;6	y	0.30	7	16.0	7	22;10	y	0.55	6	5.0	6	6;4	y	0.28	5	13.0	5	13;13	y	0.42	5	7.0	5	11;3	y	0.31	6	13.5	6	22;5	y	0.31	6	13.5	6	18;9	y	0.07	1	13.5	1	18;9	n	0.22	5	18.0	5	21;15	y	ENSMUSG00000042508.17	Dmtf1	chr5	protein_coding	cyclin D binding myb-like transcription factor 1
known_NIR_15102	chr5	9174527;9176802	9176540;9177957	-	9174527	9177957	cassetteExon	ENSMUST00000095017.11	known	0.38	8.0	13	15;1	13	n	0.33	3.0	6	6;0	6	n	0.55	8.5	7	17;0	7	n	0.70	9.5	4	18;1	4	n	0.62	11.5	7	22;1	7	n	0.33	3.0	6	6;0	6	n	0.57	6.5	5	13;0	5	n	0.52	5.5	5	11;0	5	n	0.66	11.5	6	22;1	6	n	0.62	10.0	6	18;2	6	y	0.90	9.0	1	18;0	1	n	0.71	12.5	5	21;4	5	y	ENSMUSG00000042508.17	Dmtf1	chr5	protein_coding	cyclin D binding myb-like transcription factor 1
known_NIR_15103	chr5	9176643	9177957	-	9176749	9177957	A3SS	ENSMUST00000071921.13	known	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.25	3	9	3	9	y	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	ENSMUSG00000042508.17	Dmtf1	chr5	protein_coding	cyclin D binding myb-like transcription factor 1
known_NIR_15104	chr5	9176802	9177957	-	9176749	9177957	A3SS	ENSMUST00000071921.13	known	0.11	1	8	1	8	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.14	1	6	1	6	n	0.09	1	10	1	10	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.18	2	9	2	9	y	0.00	0	9	0	9	n	0.21	4	15	4	15	y	ENSMUSG00000042508.17	Dmtf1	chr5	protein_coding	cyclin D binding myb-like transcription factor 1
known_NIR_15105	chr5	9180652	9181276	-	9180477	9181276	A3SS	ENSMUST00000071921.13	known	0.14	2	12	2	12	y	0.00	0	18	0	18	n	0.00	0	22	0	22	n	0.00	0	19	0	19	n	0.07	2	25	2	25	y	0.10	1	9	1	9	n	0.00	0	15	0	15	n	0.05	1	20	1	20	n	0.00	0	12	0	12	n	0.00	0	20	0	20	n	0.09	1	10	1	10	n	0.00	0	15	0	15	n	ENSMUSG00000042508.17	Dmtf1	chr5	protein_coding	cyclin D binding myb-like transcription factor 1
known_NIR_15106	chr5	9190480	9200376	-	9190480;9199022	9198900;9200376	ES	ENSMUST00000071921.13	known	0.26	6	17.5	6	19;16	y	0.00	0	9.5	0	9;10	n	0.00	0	23.5	0	26;21	n	0.18	4	18.0	4	19;17	y	0.29	7	17.5	7	17;18	y	0.00	0	9.0	0	8;10	n	0.08	2	22.5	2	21;24	y	0.07	1	13.0	1	17;9	n	0.05	1	20.5	1	28;13	n	0.13	2	13.5	2	15;12	y	0.00	0	8.0	0	9;7	n	0.00	0	25.5	0	21;30	n	ENSMUSG00000042508.17	Dmtf1	chr5	protein_coding	cyclin D binding myb-like transcription factor 1
known_NIR_15107	chr5	9190480	9200376	-	9199022	9200376	3pMXE	ENSMUST00000185193.8	known	0.27	6	16	6	16	y	0.00	0	10	0	10	n	0.00	0	21	0	21	n	0.19	4	17	4	17	y	0.28	7	18	7	18	y	0.00	0	10	0	10	n	0.08	2	24	2	24	y	0.10	1	9	1	9	n	0.07	1	13	1	13	n	0.14	2	12	2	12	y	0.00	0	7	0	7	n	0.00	0	30	0	30	n	ENSMUSG00000042508.17	Dmtf1	chr5	protein_coding	cyclin D binding myb-like transcription factor 1
known_NIR_15108	chr5	9201918	9202877	-	9201918	9211614	A5SS	ENSMUST00000071921.13	known	0.38	3	5	3	5	n	0.33	2	4	2	4	n	0.00	0	16	0	16	n	0.00	0	14	0	14	n	0.19	3	13	3	13	y	0.08	2	24	2	24	y	0.08	1	12	1	12	n	0.00	0	21	0	21	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	ENSMUSG00000042508.17	Dmtf1	chr5	protein_coding	cyclin D binding myb-like transcription factor 1
known_NIR_15109	chr5	92105509	92110489	-	92105509;92105856	92105737;92110489	ES	ENSMUST00000031345.15	known	0.01	1	79.5	1	94;65	n	0.05	3	53.5	3	54;53	y	0.03	4	117.0	4	122;112	y	0.06	5	85.5	5	86;85	y	0.02	2	87.5	2	99;76	y	0.00	0	58.0	0	65;51	n	0.00	0	96.0	0	107;85	n	0.00	0	67.0	0	64;70	n	0.00	0	79.0	0	90;68	n	0.03	4	117.5	4	134;101	y	0.00	0	77.0	0	82;72	n	0.01	1	99.5	1	105;94	n	ENSMUSG00000029397.16	Rchy1	chr5	protein_coding	ring finger and CHY zinc finger domain containing 1
known_NIR_15110	chr5	92110837	92111542	+	92111381	92111542	5pMXE	ENSMUST00000191860.2	known	0.00	0	13	0	13	n	0.14	1	6	1	6	n	0.00	0	13	0	13	n	0.00	0	17	0	17	n	0.06	1	16	1	16	n	0.00	0	9	0	9	n	0.24	5	16	5	16	y	0.00	0	13	0	13	n	0.12	2	14	2	14	y	0.00	0	15	0	15	n	0.11	1	8	1	8	n	0.00	0	10	0	10	n	ENSMUSG00000102644.6	Thap6	chr5	transcribed_unitary_pseudogene	THAP domain containing 6
known_NIR_15111	chr5	92111381	92112955	+	92111381;92111644	92111542;92112955	ES	ENSMUST00000193925.6	known	0.44	6	7.5	6	13;2	y	0.12	1	7.0	1	6;8	n	0.19	3	12.5	3	13;12	y	0.14	2	12.5	2	17;8	y	0.26	5	14.5	5	16;13	y	0.19	3	12.5	3	9;16	y	0.23	4	13.5	4	16;11	y	0.00	0	10.0	0	13;7	n	0.15	2	11.0	2	14;8	y	0.07	1	13.0	1	15;11	n	0.10	1	9.0	1	8;10	n	0.00	0	10.5	0	10;11	n	ENSMUSG00000102644.6	Thap6	chr5	transcribed_unitary_pseudogene	THAP domain containing 6
known_NIR_15112	chr5	92155993;92156912	92156824;92164981	-	92155993	92164981	cassetteExon	ENSMUST00000069937.11	known	0.73	5.5	2	8;3	2	y	0.76	6.5	2	6;7	2	y	0.82	18.5	4	19;18	4	y	0.75	6.0	2	5;7	2	y	0.73	16.0	6	18;14	6	y	0.71	7.5	3	9;6	3	y	0.81	12.5	3	15;10	3	y	0.70	9.5	4	12;7	4	y	0.78	7.0	2	6;8	2	y	0.65	11.0	6	9;13	6	y	0.83	5.0	1	7;3	1	n	0.56	7.5	6	10;5	6	y	ENSMUSG00000029403.15	Cdkl2	chr5	protein_coding	cyclin-dependent kinase-like 2 (CDC2-related kinase)
known_NIR_15113	chr5	92170321	92172795	-	92170091	92172795	A3SS	ENSMUST00000069937.11	known	0.20	2	8	2	8	y	0.00	0	3	0	3	n	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.05	1	18	1	18	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	ENSMUSG00000029403.15	Cdkl2	chr5	protein_coding	cyclin-dependent kinase-like 2 (CDC2-related kinase)
known_NIR_15114	chr5	92187295	92190046	-	92187295	92190658	A5SS	ENSMUST00000069937.11	known	0.44	4	5	4	5	n	0.33	3	6	3	6	n	0.24	4	13	4	13	y	0.00	0	14	0	14	n	0.40	4	6	4	6	y	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.17	2	10	2	10	y	0.00	0	6	0	6	n	0.38	3	5	3	5	n	0.43	3	4	3	4	n	0.00	0	6	0	6	n	ENSMUSG00000029403.15	Cdkl2	chr5	protein_coding	cyclin-dependent kinase-like 2 (CDC2-related kinase)
known_NIR_15115	chr5	92205929;92211294	92211196;92212184	-	92205929	92212184	cassetteExon	ENSMUST00000167918.8	known	0.21	20.5	79	22;19	79	y	0.18	10.0	45	6;14	45	y	0.21	50.5	191	50;51	191	y	0.22	20.5	71	20;21	71	y	0.22	34.5	120	38;31	120	y	0.18	14.0	63	20;8	63	y	0.19	18.5	79	16;21	79	y	0.16	15.5	82	17;14	82	y	0.26	21.0	60	19;23	60	y	0.18	18.5	86	17;20	86	y	0.29	18.5	45	18;19	45	y	0.17	17.0	86	17;17	86	y	ENSMUSG00000029405.17	G3bp2	chr5	protein_coding	GTPase activating protein (SH3 domain) binding protein 2
known_NIR_15116	chr5	92221137	92230609	-	92221137	92231194	A5SS	ENSMUST00000167918.8	known	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.00	0	14	0	14	n	0.00	0	4	0	4	n	0.29	2	5	2	5	n	0.50	1	1	1	1	n	0.25	1	3	1	3	n	0.25	3	9	3	9	y	0.25	1	3	1	3	n	0.50	2	2	2	2	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	ENSMUSG00000029405.17	G3bp2	chr5	protein_coding	GTPase activating protein (SH3 domain) binding protein 2
known_NIR_15117	chr5	92221137	92230609	-	92221137	92231388	A5SS	ENSMUST00000113127.7	known	0.00	0	42	0	42	n	0.05	1	20	1	20	n	0.00	0	111	0	111	n	0.00	0	64	0	64	n	0.03	2	63	2	63	y	0.03	1	31	1	31	n	0.02	1	52	1	52	n	0.07	3	37	3	37	y	0.02	1	41	1	41	n	0.03	2	56	2	56	y	0.00	0	42	0	42	n	0.01	1	66	1	66	n	ENSMUSG00000029405.17	G3bp2	chr5	protein_coding	GTPase activating protein (SH3 domain) binding protein 2
known_NIR_15118	chr5	92221137	92231388	-	92221137	92231194	A5SS	ENSMUST00000167918.8	known	0.93	42	3	42	3	y	0.87	20	3	20	3	y	0.89	111	14	111	14	y	0.94	64	4	64	4	y	0.93	63	5	63	5	y	0.97	31	1	31	1	n	0.95	52	3	52	3	y	0.80	37	9	37	9	y	0.93	41	3	41	3	y	0.97	56	2	56	2	y	0.98	42	1	42	1	n	0.99	66	1	66	1	n	ENSMUSG00000029405.17	G3bp2	chr5	protein_coding	GTPase activating protein (SH3 domain) binding protein 2
known_NIR_15119	chr5	92342034	92343207	+	92342034	92347676	A3SS	ENSMUST00000202155.2	known	1.00	241	0	241	0	n	1.00	243	1	243	1	n	1.00	512	0	512	0	n	0.99	226	2	226	2	y	1.00	383	1	383	1	n	1.00	270	0	270	0	n	1.00	261	0	261	0	n	1.00	192	0	192	0	n	0.98	195	3	195	3	y	0.99	229	2	229	2	y	1.00	231	0	231	0	n	0.99	218	2	218	2	y	ENSMUSG00000029407.11	Uso1	chr5	protein_coding	USO1 vesicle docking factor
known_NIR_15120	chr5	92346293	92347676	+	92342034	92347676	A5SS	ENSMUST00000202155.2	known	1.00	223	0	223	0	n	1.00	304	1	304	1	n	1.00	597	0	597	0	n	0.99	283	2	283	2	y	1.00	405	1	405	1	n	1.00	277	0	277	0	n	1.00	347	0	347	0	n	1.00	218	0	218	0	n	0.99	198	3	198	3	y	0.99	282	2	282	2	y	1.00	260	0	260	0	n	0.99	238	2	238	2	y	ENSMUSG00000029407.11	Uso1	chr5	protein_coding	USO1 vesicle docking factor
known_NIR_15121	chr5	92446117	92447921	-	92446120	92447921	A3SS	ENSMUST00000031364.5	known	0.00	0	10	0	10	n	0.00	0	17	0	17	n	0.00	0	37	0	37	n	0.00	0	16	0	16	n	0.00	0	34	0	34	n	0.00	0	19	0	19	n	0.07	2	27	2	27	y	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.00	0	22	0	22	n	0.00	0	12	0	12	n	0.00	0	18	0	18	n	ENSMUSG00000029415.5	Sdad1	chr5	protein_coding	SDA1 domain containing 1
known_NIR_15122	chr5	92559054;92560053	92560024;92562101	+	92559054	92562101	cassetteExon	ENSMUST00000113083.9	known	0.00	0.0	2	0;0	2	n	0.00	0.0	2	0;0	2	n	-	-	-	-	-	-	0.00	0.0	3	0;0	3	n	0.00	0.0	1	0;0	1	n	-	-	-	-	-	-	0.51	14.5	14	10;19	14	y	-	-	-	-	-	-	0.00	0.0	1	0;0	1	n	0.00	0.0	8	0;0	8	n	0.00	0.0	3	0;0	3	n	0.00	0.0	1	0;0	1	n	ENSMUSG00000034842.17	Art3	chr5	protein_coding	ADP-ribosyltransferase 3
known_NIR_15123	chr5	92578981	92582371	-	92578981	92582863	A5SS	ENSMUST00000038514.15	known	0.04	1	23	1	23	n	0.10	1	9	1	9	n	0.09	2	20	2	20	y	0.00	0	20	0	20	n	0.00	0	39	0	39	n	0.07	1	14	1	14	n	0.04	1	22	1	22	n	0.00	0	23	0	23	n	0.00	0	20	0	20	n	0.05	2	40	2	40	y	0.06	1	17	1	17	n	0.00	0	31	0	31	n	ENSMUSG00000034826.15	Nup54	chr5	protein_coding	nucleoporin 54
known_NIR_15124	chr5	92722572	92726331	+	92722572	92733115	A3SS	ENSMUST00000082382.8	known	0.79	41	11	41	11	y	0.63	43	25	43	25	y	0.57	4	3	4	3	n	0.62	50	31	50	31	y	0.46	18	21	18	21	y	0.62	5	3	5	3	n	0.71	39	16	39	16	y	0.64	9	5	9	5	y	0.61	25	16	25	16	y	0.63	36	21	36	21	y	0.54	34	29	34	29	y	0.58	31	22	31	22	y	ENSMUSG00000057068.16	Fam47e	chr5	protein_coding	family with sequence similarity 47, member E
known_NIR_15125	chr5	92722572	92726331	+	92722572	92738375	A3SS	ENSMUST00000176621.8	known	0.85	41	7	41	7	y	0.81	43	10	43	10	y	1.00	4	0	4	0	n	0.75	50	17	50	17	y	0.64	18	10	18	10	y	0.83	5	1	5	1	n	0.76	39	12	39	12	y	0.50	9	9	9	9	y	0.66	25	13	25	13	y	0.75	36	12	36	12	y	0.77	34	10	34	10	y	0.74	31	11	31	11	y	ENSMUSG00000057068.16	Fam47e	chr5	protein_coding	family with sequence similarity 47, member E
known_NIR_15126	chr5	92722572	92727463	+	92722572	92738375	A3SS	ENSMUST00000176621.8	known	0.77	23	7	23	7	y	0.78	35	10	35	10	y	1.00	4	0	4	0	n	0.61	27	17	27	17	y	0.60	15	10	15	10	y	0.83	5	1	5	1	n	0.67	24	12	24	12	y	0.44	7	9	7	9	y	0.52	14	13	14	13	y	0.75	36	12	36	12	y	0.67	20	10	20	10	y	0.62	18	11	18	11	y	ENSMUSG00000057068.16	Fam47e	chr5	protein_coding	family with sequence similarity 47, member E
known_NIR_15127	chr5	92722572	92727463	+	92722572;92726432	92726331;92727463	ES	ENSMUST00000146417.9	known	0.32	23	49.0	23	41;57	y	0.44	35	45.0	35	43;47	y	0.47	4	4.5	4	4;5	y	0.35	27	50.5	27	50;51	y	0.34	15	28.5	15	18;39	y	0.53	5	4.5	5	5;4	y	0.38	24	39.5	24	39;40	y	0.30	7	16.0	7	9;23	y	0.34	14	27.0	14	25;29	y	0.43	36	47.5	36	36;59	y	0.35	20	36.5	20	34;39	y	0.36	18	32.0	18	31;33	y	ENSMUSG00000057068.16	Fam47e	chr5	protein_coding	family with sequence similarity 47, member E
known_NIR_15128	chr5	92722572	92733115	+	92722572;92727543	92727463;92733115	ES	ENSMUST00000149617.2	known	0.22	11	39.5	11	23;56	y	0.34	25	48.5	25	35;62	y	0.29	3	7.5	3	4;11	y	0.37	31	52.0	31	27;77	y	0.48	21	23.0	21	15;31	y	0.35	3	5.5	3	5;6	y	0.31	16	35.0	16	24;46	y	0.26	5	14.0	5	7;21	y	0.43	16	21.0	16	14;28	y	0.29	21	50.5	21	36;65	y	0.45	29	36.0	29	20;52	y	0.44	22	27.5	22	18;37	y	ENSMUSG00000057068.16	Fam47e	chr5	protein_coding	family with sequence similarity 47, member E
known_NIR_15129	chr5	92722572;92733270	92733115;92738375	+	92722572	92738375	cassetteExon	ENSMUST00000176621.8	known	0.65	13.0	7	11;15	7	y	0.62	16.5	10	25;8	10	y	1.00	1.5	0	3;0	0	n	0.54	20.0	17	31;9	17	y	0.57	13.5	10	21;6	10	y	0.60	1.5	1	3;0	1	n	0.47	10.5	12	16;5	12	y	0.28	3.5	9	5;2	9	y	0.40	8.5	13	16;1	13	n	0.56	15.0	12	21;9	12	y	0.62	16.5	10	29;4	10	y	0.55	13.5	11	22;5	11	y	ENSMUSG00000057068.16	Fam47e	chr5	protein_coding	family with sequence similarity 47, member E
known_NIR_15130	chr5	92733270	92738375	+	92733270;92735452	92735375;92738375	ES	ENSMUST00000146417.9	known	0.18	15	68.0	15	64;72	y	0.08	8	94.5	8	75;114	y	0.00	0	16.0	0	14;18	n	0.09	9	96.5	9	90;103	y	0.10	6	55.5	6	50;61	y	0.00	0	11.5	0	13;10	n	0.07	5	62.0	5	56;68	y	0.09	2	21.0	2	25;17	y	0.02	1	50.0	1	52;48	n	0.09	9	86.5	9	82;91	y	0.05	4	70.0	4	55;85	y	0.09	5	49.0	5	46;52	y	ENSMUSG00000057068.16	Fam47e	chr5	protein_coding	family with sequence similarity 47, member E
known_NIR_15131	chr5	92733270	92738375	+	92735452	92738375	A5SS&ES	ENSMUST00000175974.2	known	0.17	15	72	15	72	y	0.07	8	114	8	114	y	0.00	0	18	0	18	n	0.08	9	103	9	103	y	0.09	6	61	6	61	y	0.00	0	10	0	10	n	0.07	5	68	5	68	y	0.11	2	17	2	17	y	0.02	1	48	1	48	n	0.09	9	91	9	91	y	0.04	4	85	4	85	y	0.09	5	52	5	52	y	ENSMUSG00000057068.16	Fam47e	chr5	protein_coding	family with sequence similarity 47, member E
known_NIR_15132	chr5	92751196	92752741	+	92751196	92752453	3pMXE	ENSMUST00000200941.2	known	0.94	266	16	266	16	y	0.93	214	16	214	16	y	0.94	212	14	212	14	y	0.97	329	9	329	9	y	0.94	340	20	340	20	y	0.96	104	4	104	4	y	0.92	326	30	326	30	y	0.95	126	6	126	6	y	0.94	159	11	159	11	y	0.95	412	22	412	22	y	0.92	221	18	221	18	y	0.92	306	28	306	28	y	ENSMUSG00000047963.8	Stbd1	chr5	protein_coding	starch binding domain 1
known_NIR_15133	chr5	92751196;92752538	92752453;92752741	+	92751196	92752741	cassetteExon	ENSMUST00000050952.4	known	0.04	11.5	266	16;7	266	y	0.04	8.5	214	16;1	214	n	0.04	9.0	212	14;4	212	y	0.01	5.0	329	9;1	329	n	0.03	10.0	340	20;0	340	n	0.02	2.0	104	4;0	104	n	0.05	15.5	326	30;1	326	n	0.03	4.0	126	6;2	126	y	0.04	6.0	159	11;1	159	n	0.03	12.0	412	22;2	412	y	0.04	9.0	221	18;0	221	n	0.04	14.0	306	28;0	306	n	ENSMUSG00000047963.8	Stbd1	chr5	protein_coding	starch binding domain 1
known_NIR_15134	chr5	93315546	93321332	+	93315546	93319198	A3SS	ENSMUST00000074733.11	known	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	23	0	23	n	0.00	0	3	0	3	n	0.00	0	19	0	19	n	0.00	0	16	0	16	n	0.36	4	7	4	7	y	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	ENSMUSG00000058013.12	Septin11	chr5	protein_coding	septin 11
known_NIR_15135	chr5	93315546	93323899	+	93315546	93319198	3pMXE	ENSMUST00000074733.11	known	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.21	6	23	6	23	y	0.00	0	3	0	3	n	0.21	5	19	5	19	y	0.27	6	16	6	16	y	0.22	2	7	2	7	n	0.56	5	4	5	4	n	0.00	0	8	0	8	n	0.50	2	2	2	2	n	0.25	2	6	2	6	n	0.33	4	8	4	8	y	ENSMUSG00000058013.12	Septin11	chr5	protein_coding	septin 11
known_NIR_15136	chr5	93350321	93351126	-	93350321	93353773	A5SS	ENSMUST00000058550.15	known	0.13	16	108	16	108	y	0.10	12	111	12	111	y	0.09	20	207	20	207	y	0.15	23	134	23	134	y	0.14	38	234	38	234	y	0.08	12	142	12	142	y	0.11	22	181	22	181	y	0.12	19	136	19	136	y	0.09	10	104	10	104	y	0.09	15	157	15	157	y	0.09	12	119	12	119	y	0.15	26	152	26	152	y	ENSMUSG00000063015.13	Ccni	chr5	protein_coding	cyclin I
known_NIR_15137	chr5	93350321	93353301	-	93350321	93351126	5pMXE	ENSMUST00000151568.8	known	0.00	0	16	0	16	n	0.00	0	12	0	12	n	0.00	0	20	0	20	n	0.00	0	23	0	23	n	0.00	0	38	0	38	n	0.00	0	12	0	12	n	0.04	1	22	1	22	n	0.05	1	19	1	19	n	0.00	0	10	0	10	n	0.06	1	15	1	15	n	0.00	0	12	0	12	n	0.07	2	26	2	26	y	ENSMUSG00000063015.13	Ccni	chr5	protein_coding	cyclin I
known_NIR_15138	chr5	93417261	93417359	+	93417261	93418653	A3SS	ENSMUST00000031331.13	known	0.00	0	16	0	16	n	0.00	0	14	0	14	n	0.03	1	35	1	35	n	0.00	0	29	0	29	n	0.00	0	36	0	36	n	0.00	0	20	0	20	n	0.00	0	22	0	22	n	0.00	0	17	0	17	n	0.04	1	24	1	24	n	0.14	3	18	3	18	y	0.00	0	15	0	15	n	0.00	0	25	0	25	n	ENSMUSG00000029385.15	Ccng2	chr5	protein_coding	cyclin G2
known_NIR_15139	chr5	96225251	96227931	-	96225251	96227792	A5SS	ENSMUST00000155901.8	known	0.05	2	35	2	35	y	0.00	0	12	0	12	n	0.00	0	34	0	34	n	0.02	1	42	1	42	n	0.00	0	42	0	42	n	0.00	0	14	0	14	n	0.10	4	35	4	35	y	0.09	3	32	3	32	y	0.00	0	21	0	21	n	0.02	1	53	1	53	n	0.00	0	32	0	32	n	0.06	2	33	2	33	y	ENSMUSG00000034724.19	Cnot6l	chr5	protein_coding	CCR4-NOT transcription complex, subunit 6-like
known_NIR_15140	chr5	96279100	96281870	-	96279104	96281870	A3SS	ENSMUST00000155901.8	known	0.10	2	18	2	18	y	0.00	0	9	0	9	n	0.00	0	39	0	39	n	0.00	0	25	0	25	n	0.17	7	35	7	35	y	0.13	3	20	3	20	y	0.04	1	22	1	22	n	0.13	3	20	3	20	y	0.17	2	10	2	10	y	0.00	0	25	0	25	n	0.09	3	30	3	30	y	0.19	5	21	5	21	y	ENSMUSG00000034724.19	Cnot6l	chr5	protein_coding	CCR4-NOT transcription complex, subunit 6-like
known_NIR_15141	chr5	96281991	96309221	-	96281991	96309796	A5SS	ENSMUST00000155901.8	known	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.09	1	10	1	10	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.14	2	12	2	12	y	ENSMUSG00000034724.19	Cnot6l	chr5	protein_coding	CCR4-NOT transcription complex, subunit 6-like
known_NIR_15142	chr5	96281991	96309478	-	96281991	96309796	A5SS	ENSMUST00000155901.8	known	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.18	2	9	2	9	y	0.00	0	9	0	9	n	0.00	0	12	0	12	n	ENSMUSG00000034724.19	Cnot6l	chr5	protein_coding	CCR4-NOT transcription complex, subunit 6-like
known_NIR_15143	chr5	97247539	97251219	-	97247602	97251219	A3SS	ENSMUST00000069453.9	known	0.05	1	19	1	19	n	0.00	0	11	0	11	n	0.04	1	22	1	22	n	0.00	0	13	0	13	n	0.00	0	16	0	16	n	0.06	1	17	1	17	n	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.20	2	8	2	8	y	0.07	2	25	2	25	y	0.14	2	12	2	12	y	0.19	4	17	4	17	y	ENSMUSG00000055725.12	Paqr3	chr5	protein_coding	progestin and adipoQ receptor family member III
known_NIR_15144	chr5	98065773	98085946	-	98034459	98085946	A3SS	ENSMUST00000031281.14	known	0.00	0	53	0	53	n	0.00	0	57	0	57	n	0.00	0	79	0	79	n	0.00	0	92	0	92	n	0.01	1	102	1	102	n	0.00	0	59	0	59	n	0.01	1	91	1	91	n	0.02	2	79	2	79	y	0.00	0	46	0	46	n	0.00	0	99	0	99	n	0.00	0	43	0	43	n	0.00	0	59	0	59	n	ENSMUSG00000029338.14	Antxr2	chr5	protein_coding	anthrax toxin receptor 2
known_NIR_15145	chr5	98127893	98143857	-	98127893	98151086	A5SS	ENSMUST00000031281.14	known	0.00	0	59	0	59	n	0.00	0	48	0	48	n	0.06	4	63	4	63	y	0.00	0	68	0	68	n	0.00	0	102	0	102	n	0.02	1	47	1	47	n	0.01	1	89	1	89	n	0.01	1	67	1	67	n	0.00	0	68	0	68	n	0.00	0	75	0	75	n	0.00	0	41	0	41	n	0.00	0	78	0	78	n	ENSMUSG00000029338.14	Antxr2	chr5	protein_coding	anthrax toxin receptor 2
known_NIR_15146	chr5	99382547	99388682	-	99382550	99388682	A3SS	ENSMUST00000031276.15	known	0.39	9	14	9	14	y	0.62	13	8	13	8	y	0.58	44	32	44	32	y	0.52	14	13	14	13	y	0.57	12	9	12	9	y	0.62	8	5	8	5	y	0.31	4	9	4	9	y	0.42	5	7	5	7	y	0.54	7	6	7	6	y	0.62	16	10	16	10	y	0.40	2	3	2	3	n	0.52	13	12	13	12	y	ENSMUSG00000089809.10	Rasgef1b	chr5	protein_coding	RasGEF domain family, member 1B
known_NIR_15147	chr6	100588817	100607844	-	100588817	100625125	A5SS	ENSMUST00000089245.7	known	1.00	10	0	10	0	n	1.00	3	0	3	0	n	1.00	9	0	9	0	n	1.00	9	0	9	0	n	1.00	6	0	6	0	n	1.00	3	0	3	0	n	0.87	13	2	13	2	y	0.86	6	1	6	1	n	1.00	6	0	6	0	n	0.82	9	2	9	2	y	1.00	4	0	4	0	n	1.00	5	0	5	0	n	ENSMUSG00000035378.18	Shq1	chr6	protein_coding	SHQ1 homolog (S. cerevisiae)
known_NIR_15148	chr6	100588817	100625125	-	100614083	100625125	A3SS&ES	ENSMUST00000113312.9	known	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	21	0	21	n	0.00	0	18	0	18	n	0.00	0	9	0	9	n	0.08	2	23	2	23	y	0.11	1	8	1	8	n	0.00	0	16	0	16	n	0.11	2	16	2	16	y	0.00	0	9	0	9	n	0.00	0	12	0	12	n	ENSMUSG00000035378.18	Shq1	chr6	protein_coding	SHQ1 homolog (S. cerevisiae)
known_NIR_15149	chr6	100841714	100842749	+	100841714;100842178	100842035;100842749	ES	ENSMUST00000063854.7	known	0.24	16	51.5	16	48;55	y	0.06	3	51.5	3	38;65	y	0.09	10	98.5	10	89;108	y	0.08	6	68.5	6	56;81	y	0.17	19	90.5	19	68;113	y	0.07	4	54.5	4	52;57	y	0.06	5	79.5	5	76;83	y	0.10	6	54.5	6	46;63	y	0.15	8	44.5	8	31;58	y	0.09	10	95.5	10	81;110	y	0.11	7	59.0	7	47;71	y	0.03	3	91.5	3	71;112	y	ENSMUSG00000052144.9	Ppp4r2	chr6	protein_coding	protein phosphatase 4, regulatory subunit 2
known_NIR_15150	chr6	100841714	100842749	+	100842178	100842749	A5SS	ENSMUST00000204001.2	known	0.23	16	55	16	55	y	0.04	3	65	3	65	y	0.08	10	108	10	108	y	0.07	6	81	6	81	y	0.14	19	113	19	113	y	0.07	4	57	4	57	y	0.06	5	83	5	83	y	0.09	6	63	6	63	y	0.12	8	58	8	58	y	0.08	10	110	10	110	y	0.09	7	71	7	71	y	0.03	3	112	3	112	y	ENSMUSG00000052144.9	Ppp4r2	chr6	protein_coding	protein phosphatase 4, regulatory subunit 2
known_NIR_15151	chr6	106746152	106746817	+	106746152	106746791	A3SS	ENSMUST00000113247.8	known	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.10	1	9	1	9	n	0.00	0	13	0	13	n	0.15	2	11	2	11	y	0.25	2	6	2	6	n	0.12	1	7	1	7	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.14	1	6	1	6	n	0.00	0	10	0	10	n	ENSMUSG00000013736.17	Trnt1	chr6	protein_coding	tRNA nucleotidyl transferase, CCA-adding, 1
known_NIR_15152	chr6	106746217	106746791	+	106746152	106746791	A5SS	ENSMUST00000113247.8	known	0.73	8	3	8	3	y	0.44	4	5	4	5	n	0.55	11	9	11	9	y	0.43	10	13	10	13	y	0.56	14	11	14	11	y	0.50	6	6	6	6	y	0.46	6	7	6	7	y	0.25	2	6	2	6	n	0.50	6	6	6	6	y	0.41	9	13	9	13	y	0.60	9	6	9	6	y	0.50	10	10	10	10	y	ENSMUSG00000013736.17	Trnt1	chr6	protein_coding	tRNA nucleotidyl transferase, CCA-adding, 1
known_NIR_15153	chr6	106746964	106747763	+	106746964	106750246	A3SS	ENSMUST00000113247.8	known	0.00	0	33	0	33	n	0.11	3	25	3	25	y	0.06	2	32	2	32	y	0.12	5	37	5	37	y	0.09	2	20	2	20	y	0.00	0	18	0	18	n	0.00	0	33	0	33	n	0.00	0	24	0	24	n	0.06	1	17	1	17	n	0.00	0	30	0	30	n	0.03	1	30	1	30	n	0.00	0	36	0	36	n	ENSMUSG00000013736.17	Trnt1	chr6	protein_coding	tRNA nucleotidyl transferase, CCA-adding, 1
known_NIR_15154	chr6	106772958	106776952	-	106772955	106776952	A3SS	ENSMUST00000013882.10	known	0.82	27	6	27	6	y	0.62	13	8	13	8	y	0.84	41	8	41	8	y	0.81	48	11	48	11	y	0.83	48	10	48	10	y	0.84	27	5	27	5	y	0.81	48	11	48	11	y	0.67	31	15	31	15	y	0.71	20	8	20	8	y	0.77	63	19	63	19	y	0.85	34	6	34	6	y	0.80	45	11	45	11	y	ENSMUSG00000005362.15	Crbn	chr6	protein_coding	cereblon
known_NIR_15155	chr6	108042200;108050080	108049928;108052667	+	108042200	108052667	cassetteExon	ENSMUST00000049246.7	known	0.33	2.0	4	3;1	4	n	0.06	1.0	15	0;2	15	n	0.27	4.5	12	4;5	12	y	0.06	1.0	16	1;1	16	n	0.15	3.0	17	3;3	17	y	0.20	1.0	4	0;2	4	n	0.26	3.5	10	0;7	10	n	0.19	2.5	11	2;3	11	y	0.18	1.5	7	1;2	7	n	0.20	2.5	10	2;3	10	y	0.13	1.5	10	1;2	10	n	0.19	3.0	13	1;5	13	n	ENSMUSG00000034639.8	Setmar	chr6	protein_coding	SET domain without mariner transposase fusion
known_NIR_15156	chr6	108340666	108345972	+	108340666;108342304	108342260;108345972	ES	ENSMUST00000032192.9	known	0.11	1	8.5	1	8;9	n	0.00	0	6.0	0	6;6	n	0.14	4	25.5	4	28;23	y	0.21	4	15.0	4	12;18	y	0.20	6	24.0	6	23;25	y	0.15	3	17.5	3	19;16	y	0.20	3	12.0	3	13;11	y	0.00	0	13.5	0	12;15	n	0.00	0	6.0	0	3;9	n	0.18	5	22.5	5	14;31	y	0.00	0	7.5	0	8;7	n	0.42	9	12.5	9	10;15	y	ENSMUSG00000030102.12	Itpr1	chr6	protein_coding	inositol 1,4,5-trisphosphate receptor 1
known_NIR_15157	chr6	108365326	108366328	+	108365299	108366328	A5SS	ENSMUST00000032192.9	known	0.11	1	8	1	8	n	0.40	2	3	2	3	n	0.13	7	45	7	45	y	0.06	1	16	1	16	n	0.03	1	30	1	30	n	0.00	0	27	0	27	n	0.19	3	13	3	13	y	0.00	0	16	0	16	n	0.24	4	13	4	13	y	0.10	2	19	2	19	y	0.17	1	5	1	5	n	0.21	3	11	3	11	y	ENSMUSG00000030102.12	Itpr1	chr6	protein_coding	inositol 1,4,5-trisphosphate receptor 1
known_NIR_15158	chr6	108394961;108409657	108409607;108415261	+	108394961	108415261	cassetteExon	ENSMUST00000203638.3	known	0.28	5.0	13	5;5	13	y	0.22	4.5	16	4;5	16	y	0.16	13.0	66	11;15	66	y	0.49	14.5	15	8;21	15	y	0.22	13.0	45	7;19	45	y	0.21	10.5	40	11;10	40	y	0.13	5.5	36	3;8	36	y	0.21	7.5	28	6;9	28	y	0.16	4.5	23	3;6	23	y	0.14	5.0	31	5;5	31	y	0.14	4.0	24	4;4	24	y	0.20	8.5	34	5;12	34	y	ENSMUSG00000030102.12	Itpr1	chr6	protein_coding	inositol 1,4,5-trisphosphate receptor 1
known_NIR_15159	chr6	108828244	108829451	+	108828463	108829451	A5SS	ENSMUST00000204804.3	known	0.95	401	19	401	19	y	0.97	359	12	359	12	y	0.97	955	30	955	30	y	0.94	430	28	430	28	y	0.96	596	23	596	23	y	0.97	584	21	584	21	y	0.95	528	28	528	28	y	0.96	519	20	519	20	y	0.94	401	24	401	24	y	0.96	500	21	500	21	y	0.96	399	18	399	18	y	0.95	562	29	562	29	y	ENSMUSG00000030104.10	Edem1	chr6	protein_coding	ER degradation enhancer, mannosidase alpha-like 1
known_NIR_15160	chr6	113023420	113024376	+	113023351	113024376	A5SS	ENSMUST00000032398.15	known	0.27	6	16	6	16	y	0.05	1	19	1	19	n	0.04	1	24	1	24	n	0.16	5	27	5	27	y	0.33	8	16	8	16	y	0.14	3	18	3	18	y	0.20	9	35	9	35	y	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.07	2	25	2	25	y	0.22	4	14	4	14	y	0.07	2	25	2	25	y	ENSMUSG00000030264.15	Thumpd3	chr6	protein_coding	THUMP domain containing 3
known_NIR_15161	chr6	113024152	113024376	+	113023351	113024376	A5SS	ENSMUST00000032398.15	known	0.00	0	16	0	16	n	0.10	2	19	2	19	y	0.00	0	24	0	24	n	0.00	0	27	0	27	n	0.00	0	16	0	16	n	0.00	0	18	0	18	n	0.10	4	35	4	35	y	0.00	0	9	0	9	n	0.07	1	14	1	14	n	0.00	0	25	0	25	n	0.00	0	14	0	14	n	0.00	0	25	0	25	n	ENSMUSG00000030264.15	Thumpd3	chr6	protein_coding	THUMP domain containing 3
known_NIR_15162	chr6	113024152	113024376	+	113023420	113024376	A5SS	ENSMUST00000155378.2	known	0.00	0	6	0	6	n	0.67	2	1	2	1	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.31	4	9	4	9	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000030264.15	Thumpd3	chr6	protein_coding	THUMP domain containing 3
known_NIR_15163	chr6	113026377	113027718	+	113026377	113032600	A3SS	ENSMUST00000032398.15	known	0.24	8	25	8	25	y	0.58	18	13	18	13	y	0.50	22	22	22	22	y	0.37	13	22	13	22	y	0.38	25	41	25	41	y	0.48	10	11	10	11	y	0.32	13	28	13	28	y	0.46	11	13	11	13	y	0.28	11	29	11	29	y	0.35	18	33	18	33	y	0.51	22	21	22	21	y	0.36	16	28	16	28	y	ENSMUSG00000030264.15	Thumpd3	chr6	protein_coding	THUMP domain containing 3
known_NIR_15164	chr6	113048396	113054029	-	113048396	113054135	A5SS	ENSMUST00000167415.8	known	0.47	7	8	7	8	y	0.63	12	7	12	7	y	0.35	7	13	7	13	y	0.67	8	4	8	4	y	0.44	12	15	12	15	y	1.00	8	0	8	0	n	0.24	5	16	5	16	y	0.57	4	3	4	3	n	0.54	7	6	7	6	y	0.59	13	9	13	9	y	0.54	13	11	13	11	y	0.25	3	9	3	9	y	ENSMUSG00000086429.10	lncRNA	chr6	lncRNA	--
known_NIR_15165	chr6	113082082	113086385	+	113082082	113082878	3pMXE	ENSMUST00000143998.8	known	0.06	1	15	1	15	n	0.00	0	7	0	7	n	0.06	2	33	2	33	y	0.08	1	11	1	11	n	0.25	8	24	8	24	y	0.06	1	16	1	16	n	0.17	4	19	4	19	y	0.07	2	26	2	26	y	0.07	1	13	1	13	n	0.00	0	18	0	18	n	0.09	1	10	1	10	n	0.06	1	15	1	15	n	ENSMUSG00000034269.13	Setd5	chr6	protein_coding	SET domain containing 5
known_NIR_15166	chr6	113082082	113086846	+	113082082	113082878	3pMXE	ENSMUST00000143998.8	known	0.17	3	15	3	15	y	0.30	3	7	3	7	y	0.20	8	33	8	33	y	0.31	5	11	5	11	y	0.37	14	24	14	24	y	0.24	5	16	5	16	y	0.17	4	19	4	19	y	0.07	2	26	2	26	y	0.24	4	13	4	13	y	0.40	12	18	12	18	y	0.23	3	10	3	10	y	0.32	7	15	7	15	y	ENSMUSG00000034269.13	Setd5	chr6	protein_coding	SET domain containing 5
known_NIR_15167	chr6	113082082;113083102	113082626;113086846	+	113082082	113086846	cassetteExon	ENSMUST00000042889.12	known	0.00	0.0	3	0;0	3	n	0.00	0.0	3	0;0	3	n	0.45	6.5	8	0;13	8	n	0.17	1.0	5	0;2	5	n	0.36	8.0	14	4;12	14	y	0.41	3.5	5	3;4	5	y	0.27	1.5	4	0;3	4	n	0.60	3.0	2	0;6	2	n	0.38	2.5	4	0;5	4	n	0.17	2.5	12	1;4	12	n	0.33	1.5	3	0;3	3	n	0.22	2.0	7	0;4	7	n	ENSMUSG00000034269.13	Setd5	chr6	protein_coding	SET domain containing 5
known_NIR_15168	chr6	113082082;113083102	113082626;113086846	+	113082082;113086577	113086385;113086846	MXE	ENSMUST00000125003.8	known	0.00	0.0	1.0	0;0	1;1	n	0.00	0.0	1.5	0;0	0;3	n	0.68	6.5	3.0	0;13	2;4	n	0.33	1.0	2.0	0;2	1;3	n	0.55	8.0	6.5	4;12	8;5	y	0.44	3.5	4.5	3;4	1;8	n	0.30	1.5	3.5	0;3	4;3	n	0.43	3.0	4.0	0;6	2;6	n	0.50	2.5	2.5	0;5	1;4	n	0.42	2.5	3.5	1;4	0;7	n	0.43	1.5	2.0	0;3	1;3	n	0.40	2.0	3.0	0;4	1;5	n	ENSMUSG00000034269.13	Setd5	chr6	protein_coding	SET domain containing 5
known_NIR_15169	chr6	113082082;113083102	113082878;113086846	+	113082082	113086846	cassetteExon	ENSMUST00000042889.12	known	0.71	7.5	3	15;0	3	n	0.54	3.5	3	7;0	3	n	0.74	23.0	8	33;13	8	y	0.57	6.5	5	11;2	5	y	0.56	18.0	14	24;12	14	y	0.67	10.0	5	16;4	5	y	0.73	11.0	4	19;3	4	y	0.89	16.0	2	26;6	2	y	0.69	9.0	4	13;5	4	y	0.48	11.0	12	18;4	12	y	0.68	6.5	3	10;3	3	y	0.58	9.5	7	15;4	7	y	ENSMUSG00000034269.13	Setd5	chr6	protein_coding	SET domain containing 5
known_NIR_15170	chr6	113082082;113083102	113082878;113086846	+	113082082;113086577	113086385;113086846	MXE	ENSMUST00000125003.8	known	0.88	7.5	1.0	15;0	1;1	n	0.70	3.5	1.5	7;0	0;3	n	0.88	23.0	3.0	33;13	2;4	y	0.76	6.5	2.0	11;2	1;3	n	0.73	18.0	6.5	24;12	8;5	y	0.69	10.0	4.5	16;4	1;8	n	0.76	11.0	3.5	19;3	4;3	y	0.80	16.0	4.0	26;6	2;6	y	0.78	9.0	2.5	13;5	1;4	n	0.76	11.0	3.5	18;4	0;7	n	0.76	6.5	2.0	10;3	1;3	n	0.76	9.5	3.0	15;4	1;5	n	ENSMUSG00000034269.13	Setd5	chr6	protein_coding	SET domain containing 5
known_NIR_15171	chr6	113082082;113086577	113086385;113086846	+	113082082	113086846	cassetteExon	ENSMUST00000042889.12	known	0.25	1.0	3	1;1	3	n	0.33	1.5	3	0;3	3	n	0.27	3.0	8	2;4	8	y	0.29	2.0	5	1;3	5	n	0.32	6.5	14	8;5	14	y	0.47	4.5	5	1;8	5	n	0.47	3.5	4	4;3	4	y	0.67	4.0	2	2;6	2	y	0.38	2.5	4	1;4	4	n	0.23	3.5	12	0;7	12	n	0.40	2.0	3	1;3	3	n	0.30	3.0	7	1;5	7	n	ENSMUSG00000034269.13	Setd5	chr6	protein_coding	SET domain containing 5
known_NIR_15172	chr6	113086951	113087046	+	113086951	113087335	A3SS	ENSMUST00000042889.12	known	0.00	0	6	0	6	n	1.00	1	0	1	0	n	0.08	2	22	2	22	y	0.00	0	15	0	15	n	0.04	1	23	1	23	n	0.11	1	8	1	8	n	0.00	0	5	0	5	n	0.14	1	6	1	6	n	0.00	0	11	0	11	n	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	ENSMUSG00000034269.13	Setd5	chr6	protein_coding	SET domain containing 5
known_NIR_15173	chr6	113086951	113087278	+	113086951	113087335	A3SS	ENSMUST00000042889.12	known	0.00	0	6	0	6	n	1.00	4	0	4	0	n	0.27	8	22	8	22	y	0.42	11	15	11	15	y	0.32	11	23	11	23	y	0.38	5	8	5	8	y	0.64	9	5	9	5	y	0.45	5	6	5	6	y	0.08	1	11	1	11	n	0.54	7	6	7	6	y	0.33	3	6	3	6	n	0.38	5	8	5	8	y	ENSMUSG00000034269.13	Setd5	chr6	protein_coding	SET domain containing 5
known_NIR_15174	chr6	113086951;113087182	113087046;113087278	+	113086951	113087278	cassetteExon	ENSMUST00000113157.8	known	1.00	1.0	0	0;2	0	n	0.11	0.5	4	1;0	4	n	0.27	3.0	8	2;4	8	y	0.04	0.5	11	0;1	11	n	0.08	1.0	11	1;1	11	n	0.09	0.5	5	1;0	5	n	0.10	1.0	9	0;2	9	n	0.17	1.0	5	1;1	5	n	0.00	0.0	1	0;0	1	n	0.07	0.5	7	1;0	7	n	0.14	0.5	3	0;1	3	n	0.17	1.0	5	0;2	5	n	ENSMUSG00000034269.13	Setd5	chr6	protein_coding	SET domain containing 5
known_NIR_15175	chr6	113105738	113114914	+	113105502	113114914	A5SS	ENSMUST00000042889.12	known	0.00	0	28	0	28	n	0.08	2	22	2	22	y	0.02	1	53	1	53	n	0.00	0	28	0	28	n	0.00	0	45	0	45	n	0.00	0	21	0	21	n	0.00	0	43	0	43	n	0.00	0	29	0	29	n	0.00	0	25	0	25	n	0.00	0	39	0	39	n	0.00	0	17	0	17	n	0.00	0	26	0	26	n	ENSMUSG00000034269.13	Setd5	chr6	protein_coding	SET domain containing 5
known_NIR_15176	chr6	113226940	113232777	+	113231111	113232777	5pMXE	ENSMUST00000144976.4	known	0.05	2	36	2	36	y	0.00	0	51	0	51	n	0.00	0	27	0	27	n	0.00	0	41	0	41	n	0.02	1	58	1	58	n	0.00	0	27	0	27	n	0.00	0	49	0	49	n	0.00	0	24	0	24	n	0.05	2	38	2	38	y	0.04	2	51	2	51	y	0.00	0	29	0	29	n	0.02	1	46	1	46	n	ENSMUSG00000030269.15	Mtmr14	chr6	protein_coding	myotubularin related protein 14
known_NIR_15177	chr6	113226940;113231111	113230692;113232777	+	113226940	113232777	cassetteExon	ENSMUST00000142938.8	known	0.94	30.5	2	25;36	2	y	1.00	37.5	0	24;51	0	n	1.00	34.0	0	41;27	0	n	1.00	43.5	0	46;41	0	n	0.98	51.0	1	44;58	1	n	1.00	21.5	0	16;27	0	n	1.00	41.5	0	34;49	0	n	1.00	27.0	0	30;24	0	n	0.95	35.5	2	33;38	2	y	0.96	43.5	2	36;51	2	y	1.00	29.0	0	29;29	0	n	0.98	42.5	1	39;46	1	n	ENSMUSG00000030269.15	Mtmr14	chr6	protein_coding	myotubularin related protein 14
known_NIR_15178	chr6	113247662	113254792	+	113247662	113254751	A3SS	ENSMUST00000113146.9	known	0.08	2	22	2	22	y	0.14	5	32	5	32	y	0.05	2	37	2	37	y	0.07	3	38	3	38	y	0.09	4	43	4	43	y	0.00	0	30	0	30	n	0.14	7	42	7	42	y	0.10	2	19	2	19	y	0.00	0	26	0	26	n	0.00	0	36	0	36	n	0.00	0	43	0	43	n	0.00	0	46	0	46	n	ENSMUSG00000030269.15	Mtmr14	chr6	protein_coding	myotubularin related protein 14
known_NIR_15179	chr6	113247662	113257564	+	113247662	113254751	3pMXE	ENSMUST00000137772.8	known	0.51	23	22	23	22	y	0.35	17	32	17	32	y	0.26	13	37	13	37	y	0.22	11	38	11	38	y	0.40	29	43	29	43	y	0.21	8	30	8	30	y	0.26	15	42	15	42	y	0.30	8	19	8	19	y	0.26	9	26	9	26	y	0.37	21	36	21	36	y	0.30	18	43	18	43	y	0.25	15	46	15	46	y	ENSMUSG00000030269.15	Mtmr14	chr6	protein_coding	myotubularin related protein 14
known_NIR_15180	chr6	113247662	113257564	+	113247662;113254906	113254751;113257564	ES	ENSMUST00000113146.9	known	0.43	23	30.0	23	22;38	y	0.32	17	35.5	17	32;39	y	0.27	13	36.0	13	37;35	y	0.24	11	34.0	11	38;30	y	0.39	29	45.5	29	43;48	y	0.21	8	29.5	8	30;29	y	0.24	15	46.5	15	42;51	y	0.26	8	23.0	8	19;27	y	0.26	9	25.0	9	26;24	y	0.37	21	36.0	21	36;36	y	0.30	18	42.5	18	43;42	y	0.29	15	36.5	15	46;27	y	ENSMUSG00000030269.15	Mtmr14	chr6	protein_coding	myotubularin related protein 14
known_NIR_15181	chr6	113247662;113254906	113254792;113257564	+	113247662	113257564	cassetteExon	ENSMUST00000134945.8	known	0.47	20.0	23	2;38	23	y	0.56	22.0	17	5;39	17	y	0.59	18.5	13	2;35	13	y	0.60	16.5	11	3;30	11	y	0.47	26.0	29	4;48	29	y	0.64	14.5	8	0;29	8	n	0.66	29.0	15	7;51	15	y	0.64	14.5	8	2;27	8	y	0.57	12.0	9	0;24	9	n	0.46	18.0	21	0;36	21	n	0.54	21.0	18	0;42	18	n	0.47	13.5	15	0;27	15	n	ENSMUSG00000030269.15	Mtmr14	chr6	protein_coding	myotubularin related protein 14
known_NIR_15182	chr6	113284298	113286764	+	113284530	113286764	A5SS	ENSMUST00000113122.8	known	0.25	4	12	4	12	y	0.00	0	9	0	9	n	0.19	5	21	5	21	y	0.40	4	6	4	6	y	0.28	5	13	5	13	y	0.38	5	8	5	8	y	0.22	2	7	2	7	n	0.30	3	7	3	7	y	0.20	1	4	1	4	n	0.12	2	14	2	14	y	0.29	2	5	2	5	n	0.00	0	16	0	16	n	ENSMUSG00000001632.17	Brpf1	chr6	protein_coding	bromodomain and PHD finger containing, 1
known_NIR_15183	chr6	113294655	113295373	+	113294637	113295373	A5SS	ENSMUST00000113122.8	known	0.18	6	27	6	27	y	0.22	4	14	4	14	y	0.43	20	26	20	26	y	0.11	2	17	2	17	y	0.36	9	16	9	16	y	0.50	5	5	5	5	y	0.21	6	23	6	23	y	0.00	0	16	0	16	n	0.42	5	7	5	7	y	0.15	4	23	4	23	y	0.22	4	14	4	14	y	0.19	5	21	5	21	y	ENSMUSG00000001632.17	Brpf1	chr6	protein_coding	bromodomain and PHD finger containing, 1
known_NIR_15184	chr6	113295682	113295999	+	113295682	113296002	A3SS	ENSMUST00000113122.8	known	0.19	4	17	4	17	y	0.19	3	13	3	13	y	0.24	7	22	7	22	y	0.23	3	10	3	10	y	0.34	12	23	12	23	y	0.14	2	12	2	12	y	0.17	5	24	5	24	y	0.21	3	11	3	11	y	0.12	2	14	2	14	y	0.37	7	12	7	12	y	0.17	3	15	3	15	y	0.38	9	15	9	15	y	ENSMUSG00000001632.17	Brpf1	chr6	protein_coding	bromodomain and PHD finger containing, 1
known_NIR_15185	chr6	113296322	113297395	+	113296322;113296913	113296629;113297395	ES	ENSMUST00000113122.8	known	0.00	0	17.0	0	16;18	n	0.00	0	24.5	0	23;26	n	0.10	3	28.0	3	25;31	y	0.00	0	18.0	0	16;20	n	0.03	1	29.5	1	27;32	n	0.05	1	20.5	1	14;27	n	0.10	3	27.0	3	26;28	y	0.10	2	17.5	2	17;18	y	0.00	0	25.0	0	21;29	n	0.00	0	31.0	0	22;40	n	0.00	0	14.0	0	10;18	n	0.11	3	24.0	3	23;25	y	ENSMUSG00000001632.17	Brpf1	chr6	protein_coding	bromodomain and PHD finger containing, 1
known_NIR_15186	chr6	113305440	113306107	+	113305573	113306107	A5SS	ENSMUST00000136263.4	known	0.00	0	7	0	7	n	0.40	2	3	2	3	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.11	1	8	1	8	n	0.29	2	5	2	5	n	0.20	2	8	2	8	y	1.00	3	0	3	0	n	0.20	1	4	1	4	n	0.25	2	6	2	6	n	0.00	0	3	0	3	n	0.12	1	7	1	7	n	ENSMUSG00000030271.15	Ogg1	chr6	protein_coding	8-oxoguanine DNA-glycosylase 1
known_NIR_15187	chr6	113305573	113306107	+	113305573	113306190	A3SS	ENSMUST00000032406.15	known	0.41	7	10	7	10	y	0.17	3	15	3	15	y	0.36	10	18	10	18	y	0.33	5	10	5	10	y	0.73	8	3	8	3	y	0.38	5	8	5	8	y	0.28	8	21	8	21	y	0.00	0	5	0	5	n	0.21	4	15	4	15	y	0.32	6	13	6	13	y	0.27	3	8	3	8	y	0.58	7	5	7	5	y	ENSMUSG00000030271.15	Ogg1	chr6	protein_coding	8-oxoguanine DNA-glycosylase 1
known_NIR_15188	chr6	113305573	113306297	+	113305573	113306107	A3SS	ENSMUST00000136263.4	known	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.40	4	6	4	6	y	0.00	0	3	0	3	n	0.12	1	7	1	7	n	ENSMUSG00000030271.15	Ogg1	chr6	protein_coding	8-oxoguanine DNA-glycosylase 1
known_NIR_15189	chr6	113305573	113306297	+	113305573	113306190	A3SS	ENSMUST00000032406.15	known	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	18	0	18	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	21	0	21	n	0.00	0	5	0	5	n	0.00	0	15	0	15	n	0.24	4	13	4	13	y	0.00	0	8	0	8	n	0.17	1	5	1	5	n	ENSMUSG00000030271.15	Ogg1	chr6	protein_coding	8-oxoguanine DNA-glycosylase 1
known_NIR_15190	chr6	113353025	113354277	-	113353025	113353853	A5SS	ENSMUST00000113106.3	known	0.23	5	17	5	17	y	0.56	5	4	5	4	n	0.17	4	20	4	20	y	0.44	12	15	12	15	y	0.27	8	22	8	22	y	0.12	1	7	1	7	n	0.35	6	11	6	11	y	0.28	5	13	5	13	y	0.00	0	11	0	11	n	0.15	4	22	4	22	y	0.10	1	9	1	9	n	0.41	11	16	11	16	y	ENSMUSG00000048930.13	Tada3	chr6	protein_coding	transcriptional adaptor 3
known_NIR_15191	chr6	113353025	113354277	-	113353906	113354277	A3SS&ES	ENSMUST00000099118.8	known	0.25	5	15	5	15	y	0.38	5	8	5	8	y	0.24	4	13	4	13	y	0.55	12	10	12	10	y	0.40	8	12	8	12	y	0.07	1	13	1	13	n	0.40	6	9	6	9	y	0.33	5	10	5	10	y	0.00	0	10	0	10	n	0.21	4	15	4	15	y	0.07	1	13	1	13	n	0.42	11	15	11	15	y	ENSMUSG00000048930.13	Tada3	chr6	protein_coding	transcriptional adaptor 3
known_NIR_15192	chr6	113353025;113353906	113353853;113354277	-	113353025	113354277	cassetteExon	ENSMUST00000032410.14	known	0.76	16.0	5	17;15	5	y	0.55	6.0	5	4;8	5	y	0.80	16.5	4	20;13	4	y	0.51	12.5	12	15;10	12	y	0.68	17.0	8	22;12	8	y	0.91	10.0	1	7;13	1	n	0.62	10.0	6	11;9	6	y	0.70	11.5	5	13;10	5	y	1.00	10.5	0	11;10	0	n	0.82	18.5	4	22;15	4	y	0.92	11.0	1	9;13	1	n	0.58	15.5	11	16;15	11	y	ENSMUSG00000048930.13	Tada3	chr6	protein_coding	transcriptional adaptor 3
known_NIR_15193	chr6	113355169	113358924	+	113355169;113357805	113357687;113358924	ES	ENSMUST00000156898.5	known	0.02	3	156.0	3	88;224	y	0.01	2	159.5	2	108;211	y	0.05	9	176.0	9	113;239	y	0.02	3	177.0	3	126;228	y	0.02	5	211.5	5	151;272	y	0.03	3	103.5	3	66;141	y	0.01	2	187.5	2	144;231	y	0.03	3	105.0	3	68;142	y	0.05	7	132.0	7	93;171	y	0.02	4	192.0	4	111;273	y	0.01	1	172.5	1	122;223	n	0.01	1	170.5	1	110;231	n	ENSMUSG00000079426.14	Arpc4	chr6	protein_coding	actin related protein 2/3 complex, subunit 4
known_NIR_15194	chr6	113393393	113393750	-	113393407	113393750	A3SS	ENSMUST00000113092.9	known	0.08	6	71	6	71	y	0.05	3	63	3	63	y	0.07	5	70	5	70	y	0.04	3	82	3	82	y	0.06	6	96	6	96	y	0.09	5	48	5	48	y	0.10	8	76	8	76	y	0.00	0	48	0	48	n	0.06	3	44	3	44	y	0.06	6	91	6	91	y	0.13	13	89	13	89	y	0.06	5	82	5	82	y	ENSMUSG00000051169.15	Rpusd3	chr6	protein_coding	RNA pseudouridylate synthase domain containing 3
known_NIR_15195	chr6	113394372;113395036	113394808;113395771	-	113394372	113395771	cassetteExon	ENSMUST00000129560.2	known	1.00	72.5	0	75;70	0	n	1.00	48.5	0	52;45	0	n	1.00	48.0	0	50;46	0	n	0.98	57.5	1	63;52	1	n	0.99	66.5	1	68;65	1	n	1.00	37.5	0	45;30	0	n	1.00	68.5	0	69;68	0	n	1.00	35.5	0	30;41	0	n	1.00	47.5	0	47;48	0	n	0.97	67.5	2	61;74	2	y	1.00	65.0	0	74;56	0	n	1.00	71.0	0	76;66	0	n	ENSMUSG00000051169.15	Rpusd3	chr6	protein_coding	RNA pseudouridylate synthase domain containing 3
known_NIR_15196	chr6	113395883	113396179	-	113395910	113396179	A3SS	ENSMUST00000113092.9	known	0.05	4	81	4	81	y	0.00	0	46	0	46	n	0.00	0	53	0	53	n	0.04	3	69	3	69	y	0.04	4	92	4	92	y	0.03	1	32	1	32	n	0.11	8	62	8	62	y	0.18	9	42	9	42	y	0.02	1	60	1	60	n	0.05	4	70	4	70	y	0.03	2	69	2	69	y	0.03	2	61	2	61	y	ENSMUSG00000051169.15	Rpusd3	chr6	protein_coding	RNA pseudouridylate synthase domain containing 3
known_NIR_15197	chr6	113411473	113411691	-	113411473	113412675	A5SS	ENSMUST00000113089.8	known	-	-	-	-	-	-	1.00	2	0	2	0	n	1.00	10	0	10	0	n	-	-	-	-	-	-	0.80	4	1	4	1	n	1.00	3	0	3	0	n	0.82	9	2	9	2	y	1.00	2	0	2	0	n	1.00	1	0	1	0	n	1.00	7	0	7	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030278.12	Cidec	chr6	protein_coding	cell death-inducing DFFA-like effector c
known_NIR_15198	chr6	113419765	113424219	+	113419758	113424219	A5SS	ENSMUST00000101070.5	known	0.03	3	93	3	93	y	0.00	0	59	0	59	n	0.00	0	97	0	97	n	0.04	4	100	4	100	y	0.02	2	130	2	130	y	0.02	1	59	1	59	n	0.00	0	108	0	108	n	0.00	0	68	0	68	n	0.00	0	64	0	64	n	0.05	6	119	6	119	y	0.06	5	78	5	78	y	0.02	2	98	2	98	y	ENSMUSG00000051256.11	Jagn1	chr6	protein_coding	jagunal homolog 1
known_NIR_15199	chr6	113451233	113453360	+	113451233	113451514	A3SS&ES	ENSMUST00000204632.2	known	0.21	19	70	19	70	y	0.15	12	70	12	70	y	0.15	8	46	8	46	y	0.23	18	61	18	61	y	0.14	14	84	14	84	y	0.10	3	26	3	26	y	0.21	22	81	22	81	y	0.17	5	25	5	25	y	0.08	4	48	4	48	y	0.17	14	66	14	66	y	0.17	12	57	12	57	y	0.24	18	58	18	58	y	ENSMUSG00000030281.17	Il17rc	chr6	protein_coding	interleukin 17 receptor C
known_NIR_15200	chr6	113451233	113453360	+	113451233	113453387	A3SS	ENSMUST00000058300.14	known	1.00	19	0	19	0	n	0.80	12	3	12	3	y	0.89	8	1	8	1	n	0.90	18	2	18	2	y	1.00	14	0	14	0	n	1.00	3	0	3	0	n	1.00	22	0	22	0	n	0.83	5	1	5	1	n	0.80	4	1	4	1	n	0.88	14	2	14	2	y	1.00	12	0	12	0	n	0.95	18	1	18	1	n	ENSMUSG00000030281.17	Il17rc	chr6	protein_coding	interleukin 17 receptor C
known_NIR_15201	chr6	113451233	113453387	+	113451233	113451514	A3SS&ES	ENSMUST00000205208.3	known	0.00	0	70	0	70	n	0.04	3	70	3	70	y	0.02	1	46	1	46	n	0.03	2	61	2	61	y	0.00	0	84	0	84	n	0.00	0	26	0	26	n	0.00	0	81	0	81	n	0.04	1	25	1	25	n	0.02	1	48	1	48	n	0.03	2	66	2	66	y	0.00	0	57	0	57	n	0.02	1	58	1	58	n	ENSMUSG00000030281.17	Il17rc	chr6	protein_coding	interleukin 17 receptor C
known_NIR_15202	chr6	113451233;113451558	113451514;113453360	+	113451233	113453360	cassetteExon	ENSMUST00000204447.3	known	0.75	57.0	19	70;44	19	y	0.81	52.0	12	70;34	12	y	0.82	36.5	8	46;27	8	y	0.77	59.0	18	61;57	18	y	0.84	72.0	14	84;60	14	y	0.87	20.5	3	26;15	3	y	0.75	66.0	22	81;51	22	y	0.81	21.0	5	25;17	5	y	0.92	43.5	4	48;39	4	y	0.79	54.0	14	66;42	14	y	0.80	47.5	12	57;38	12	y	0.71	44.5	18	58;31	18	y	ENSMUSG00000030281.17	Il17rc	chr6	protein_coding	interleukin 17 receptor C
known_NIR_15203	chr6	113451233;113451558	113451514;113453387	+	113451233	113453387	cassetteExon	ENSMUST00000058300.14	known	1.00	37.5	0	70;5	0	n	0.93	41.5	3	70;13	3	y	0.96	26.0	1	46;6	1	n	0.95	34.5	2	61;8	2	y	1.00	47.0	0	84;10	0	n	1.00	14.5	0	26;3	0	n	1.00	45.5	0	81;10	0	n	0.93	13.5	1	25;2	1	n	0.97	29.0	1	48;10	1	n	0.95	36.0	2	66;6	2	y	1.00	31.5	0	57;6	0	n	0.97	34.5	1	58;11	1	n	ENSMUSG00000030281.17	Il17rc	chr6	protein_coding	interleukin 17 receptor C
known_NIR_15204	chr6	113451558	113453387	+	113451558	113453360	A3SS	ENSMUST00000205208.3	known	0.10	5	44	5	44	y	0.28	13	34	13	34	y	0.18	6	27	6	27	y	0.12	8	57	8	57	y	0.14	10	60	10	60	y	0.17	3	15	3	15	y	0.16	10	51	10	51	y	0.11	2	17	2	17	y	0.20	10	39	10	39	y	0.12	6	42	6	42	y	0.14	6	38	6	38	y	0.26	11	31	11	31	y	ENSMUSG00000030281.17	Il17rc	chr6	protein_coding	interleukin 17 receptor C
known_NIR_15205	chr6	113624782	113647160	+	113624782	113642664	3pMXE	ENSMUST00000204091.2	known	0.07	1	14	1	14	n	0.08	1	11	1	11	n	0.07	1	13	1	13	n	0.00	0	19	0	19	n	0.07	2	28	2	28	y	0.00	0	20	0	20	n	0.07	1	14	1	14	n	0.00	0	16	0	16	n	0.00	0	26	0	26	n	0.00	0	18	0	18	n	0.00	0	7	0	7	n	0.04	1	22	1	22	n	ENSMUSG00000060477.15	Irak2	chr6	protein_coding	interleukin-1 receptor-associated kinase 2
known_NIR_15206	chr6	113624782	113647160	+	113624782;113642807	113642664;113647160	ES	ENSMUST00000059286.14	known	0.07	1	12.5	1	14;11	n	0.07	1	12.5	1	11;14	n	0.10	1	9.5	1	13;6	n	0.00	0	15.5	0	19;12	n	0.08	2	24.0	2	28;20	y	0.00	0	16.0	0	20;12	n	0.07	1	14.0	1	14;14	n	0.00	0	15.5	0	16;15	n	0.00	0	21.5	0	26;17	n	0.00	0	15.0	0	18;12	n	0.00	0	14.5	0	7;22	n	0.04	1	22.5	1	22;23	n	ENSMUSG00000060477.15	Irak2	chr6	protein_coding	interleukin-1 receptor-associated kinase 2
known_NIR_15207	chr6	113624782	113647160	+	113642807	113647160	A5SS&ES	ENSMUST00000204744.3	known	0.08	1	11	1	11	n	0.07	1	14	1	14	n	0.14	1	6	1	6	n	0.00	0	12	0	12	n	0.09	2	20	2	20	y	0.00	0	12	0	12	n	0.07	1	14	1	14	n	0.00	0	15	0	15	n	0.00	0	17	0	17	n	0.00	0	12	0	12	n	0.00	0	22	0	22	n	0.04	1	23	1	23	n	ENSMUSG00000060477.15	Irak2	chr6	protein_coding	interleukin-1 receptor-associated kinase 2
known_NIR_15208	chr6	113663919	113667774	+	113663919	113667744	A3SS	ENSMUST00000059286.14	known	0.32	8	17	8	17	y	0.00	0	24	0	24	n	0.27	12	32	12	32	y	0.23	7	24	7	24	y	0.23	11	36	11	36	y	0.43	13	17	13	17	y	0.17	7	33	7	33	y	0.26	10	28	10	28	y	0.00	0	23	0	23	n	0.28	13	33	13	33	y	0.19	6	25	6	25	y	0.24	7	22	7	22	y	ENSMUSG00000060477.15	Irak2	chr6	protein_coding	interleukin-1 receptor-associated kinase 2
known_NIR_15209	chr6	113679682	113680995	+	113679499	113680995	A5SS	ENSMUST00000089018.11	known	1.00	54	0	54	0	n	0.91	60	6	60	6	y	0.99	94	1	94	1	n	0.93	42	3	42	3	y	0.94	61	4	61	4	y	1.00	32	0	32	0	n	1.00	68	0	68	0	n	1.00	37	0	37	0	n	0.91	41	4	41	4	y	0.93	84	6	84	6	y	1.00	55	0	55	0	n	0.95	69	4	69	4	y	ENSMUSG00000056952.14	Tatdn2	chr6	protein_coding	TatD DNase domain containing 2
known_NIR_15210	chr6	113684354	113687002	+	113684354;113686604	113686421;113687002	ES	ENSMUST00000089018.11	known	0.00	0	59.5	0	70;49	n	0.01	1	70.5	1	71;70	n	0.05	5	99.0	5	103;95	y	0.01	1	66.0	1	64;68	n	0.00	0	70.0	0	87;53	n	0.00	0	40.5	0	50;31	n	0.03	2	75.0	2	81;69	y	0.02	1	46.0	1	40;52	n	0.02	1	58.5	1	62;55	n	0.02	2	106.5	2	102;111	y	0.02	1	65.0	1	65;65	n	0.06	5	80.5	5	92;69	y	ENSMUSG00000056952.14	Tatdn2	chr6	protein_coding	TatD DNase domain containing 2
known_NIR_15211	chr6	113707868	113712018	-	113707868;113711640	113711507;113712018	ES	ENSMUST00000032440.6	known	0.00	0	167.5	0	182;153	n	0.00	0	147.0	0	163;131	n	0.00	0	283.5	0	330;237	n	0.01	2	174.0	2	197;151	y	0.00	0	213.5	0	238;189	n	0.00	0	140.0	0	167;113	n	0.00	0	163.5	0	179;148	n	0.00	0	157.0	0	164;150	n	0.00	0	115.5	0	117;114	n	0.00	0	195.0	0	224;166	n	0.00	0	166.5	0	183;150	n	0.00	0	174.0	0	196;152	n	ENSMUSG00000030298.11	Sec13	chr6	protein_coding	SEC13 homolog, nuclear pore and COPII coat complex component
known_NIR_15212	chr6	114620111;114624018	114623898;114649935	+	114620111	114649935	cassetteExon	ENSMUST00000032457.17	known	0.18	4.0	18	0;8	18	n	0.11	1.5	12	2;1	12	n	0.07	1.0	13	2;0	13	n	0.22	5.0	18	6;4	18	y	0.33	5.5	11	3;8	11	y	0.29	2.0	5	0;4	5	n	0.24	4.5	14	5;4	14	y	0.08	0.5	6	0;1	6	n	0.20	4.0	16	1;7	16	n	0.17	2.5	12	0;5	12	n	0.36	4.5	8	5;4	8	y	0.30	5.5	13	4;7	13	y	ENSMUSG00000030314.17	Atg7	chr6	protein_coding	autophagy related 7
known_NIR_15213	chr6	114620111;114649804	114649752;114649935	+	114620111	114649935	cassetteExon	ENSMUST00000032457.17	known	0.03	0.5	18	0;1	18	n	0.17	2.5	12	2;3	12	y	0.00	0.0	13	0;0	13	n	0.10	2.0	18	0;4	18	n	0.08	1.0	11	0;2	11	n	0.29	2.0	5	0;4	5	n	0.22	4.0	14	1;7	14	n	0.00	0.0	6	0;0	6	n	0.06	1.0	16	0;2	16	n	0.14	2.0	12	0;4	12	n	0.06	0.5	8	0;1	8	n	0.19	3.0	13	1;5	13	n	ENSMUSG00000030314.17	Atg7	chr6	protein_coding	autophagy related 7
known_NIR_15214	chr6	114629512	114649935	+	114620111	114649935	A5SS	ENSMUST00000032457.17	known	0.00	0	18	0	18	n	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	18	0	18	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.13	2	13	2	13	y	ENSMUSG00000030314.17	Atg7	chr6	protein_coding	autophagy related 7
known_NIR_15215	chr6	114690329	114753918	+	114690329;114701935	114701855;114753918	ES	ENSMUST00000032457.17	known	0.01	1	82.5	1	74;91	n	0.00	0	78.5	0	80;77	n	0.04	2	52.5	2	40;65	y	0.00	0	81.0	0	68;94	n	0.00	0	101.0	0	87;115	n	0.00	0	36.5	0	28;45	n	0.00	0	101.0	0	93;109	n	0.00	0	31.5	0	27;36	n	0.00	0	67.5	0	65;70	n	0.02	2	101.0	2	81;121	y	0.00	0	98.5	0	85;112	n	0.01	1	81.5	1	69;94	n	ENSMUSG00000030314.17	Atg7	chr6	protein_coding	autophagy related 7
known_NIR_15216	chr6	114841040	114867578	-	114841040	114852000	5pMXE	ENSMUST00000152710.8	known	1.00	29	0	29	0	n	1.00	41	0	41	0	n	0.96	49	2	49	2	y	0.98	47	1	47	1	n	0.97	63	2	63	2	y	1.00	18	0	18	0	n	1.00	51	0	51	0	n	1.00	32	0	32	0	n	0.94	32	2	32	2	y	1.00	49	0	49	0	n	1.00	34	0	34	0	n	0.98	44	1	44	1	n	ENSMUSG00000030315.16	Vgll4	chr6	protein_coding	vestigial like family member 4
known_NIR_15217	chr6	114867767	114934897	-	114867767	114898278	5pMXE	ENSMUST00000032459.14	known	0.75	9	3	9	3	y	1.00	16	0	16	0	n	0.78	18	5	18	5	y	0.82	14	3	14	3	y	0.81	30	7	30	7	y	0.89	17	2	17	2	y	0.76	25	8	25	8	y	0.71	12	5	12	5	y	0.80	8	2	8	2	y	0.87	27	4	27	4	y	0.88	15	2	15	2	y	0.36	5	9	5	9	y	ENSMUSG00000030315.16	Vgll4	chr6	protein_coding	vestigial like family member 4
known_NIR_15218	chr6	114934972	114946674	-	114934972	114945821	5pMXE	ENSMUST00000147639.8	known	1.00	4	0	4	0	n	0.56	5	4	5	4	n	0.45	9	11	9	11	y	0.52	13	12	13	12	y	0.29	4	10	4	10	y	0.43	6	8	6	8	y	0.62	13	8	13	8	y	0.23	3	10	3	10	y	0.83	5	1	5	1	n	0.38	5	8	5	8	y	0.50	7	7	7	7	y	0.44	7	9	7	9	y	ENSMUSG00000030315.16	Vgll4	chr6	protein_coding	vestigial like family member 4
known_NIR_15219	chr6	114989280	114993044	-	114989284	114993044	A3SS	ENSMUST00000032461.12	known	0.20	2	8	2	8	y	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.12	1	7	1	7	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.33	5	10	5	10	y	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.09	2	21	2	21	y	0.00	0	7	0	7	n	0.12	1	7	1	7	n	ENSMUSG00000030316.14	Tamm41	chr6	protein_coding	TAM41 mitochondrial translocator assembly and maintenance homolog
known_NIR_15220	chr6	115008723	115009181	-	115002385	115009181	A3SS	ENSMUST00000032461.12	known	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.10	2	19	2	19	y	0.00	0	9	0	9	n	0.06	1	16	1	16	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	23	0	23	n	ENSMUSG00000030316.14	Tamm41	chr6	protein_coding	TAM41 mitochondrial translocator assembly and maintenance homolog
known_NIR_15221	chr6	115009273;115011211	115011117;115011912	-	115009273	115011912	cassetteExon	ENSMUST00000032461.12	known	0.14	1.0	6	2;0	6	n	0.33	2.5	5	3;2	5	y	0.00	0.0	5	0;0	5	n	0.50	2.0	2	0;4	2	n	0.13	1.5	10	2;1	10	n	0.14	0.5	3	1;0	3	n	0.16	2.5	13	3;2	13	y	0.17	1.0	5	1;1	5	n	0.09	0.5	5	1;0	5	n	0.20	2.5	10	3;2	10	y	0.25	1.0	3	1;1	3	n	0.00	0.0	14	0;0	14	n	ENSMUSG00000030316.14	Tamm41	chr6	protein_coding	TAM41 mitochondrial translocator assembly and maintenance homolog
known_NIR_15222	chr6	115360704	115362558	+	115360704	115416801	A3SS	ENSMUST00000171644.8	known	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.07	1	13	1	13	n	0.12	2	15	2	15	y	0.00	0	17	0	17	n	0.00	0	1	0	1	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	ENSMUSG00000000440.13	Pparg	chr6	protein_coding	peroxisome proliferator activated receptor gamma
known_NIR_15223	chr6	115399153	115416801	+	115360704	115416801	A5SS	ENSMUST00000171644.8	known	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.07	1	13	1	13	n	0.00	0	15	0	15	n	0.00	0	17	0	17	n	0.00	0	1	0	1	n	0.07	1	13	1	13	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.50	16	16	16	16	y	0.30	6	14	6	14	y	0.17	2	10	2	10	y	ENSMUSG00000000440.13	Pparg	chr6	protein_coding	peroxisome proliferator activated receptor gamma
known_NIR_15224	chr6	115524991	115530952	+	115524991;115526955	115526874;115530952	ES	ENSMUST00000130425.8	known	0.00	0	12.0	0	12;12	n	0.00	0	7.0	0	6;8	n	0.05	1	21.0	1	18;24	n	0.08	1	12.0	1	6;18	n	0.00	0	15.0	0	12;18	n	0.08	1	11.5	1	11;12	n	0.04	1	22.5	1	26;19	n	0.00	0	13.5	0	13;14	n	0.16	2	10.5	2	8;13	y	0.00	0	22.0	0	19;25	n	0.09	1	10.0	1	4;16	n	0.00	0	16.5	0	15;18	n	ENSMUSG00000042389.14	Tsen2	chr6	protein_coding	tRNA splicing endonuclease subunit 2
known_NIR_15225	chr6	115563765;115566355	115566306;115569235	-	115563765	115569235	cassetteExon	ENSMUST00000088962.5	known	0.76	51.5	16	47;56	16	y	0.78	65.5	19	61;70	19	y	0.80	64.5	16	66;63	16	y	0.66	53.5	27	56;51	27	y	0.69	57.5	26	55;60	26	y	0.75	47.0	16	51;43	16	y	0.76	59.0	19	57;61	19	y	0.79	37.5	10	41;34	10	y	0.79	45.0	12	48;42	12	y	0.73	66.5	24	71;62	24	y	0.78	40.0	11	38;42	11	y	0.80	68.0	17	69;67	17	y	ENSMUSG00000068011.5	Mkrn2os	chr6	protein_coding	makorin, ring finger protein 2, opposite strand
known_NIR_15226	chr6	115587661	115590288	+	115587661;115588900	115588596;115590288	ES	ENSMUST00000000449.9	known	0.00	0	37.5	0	37;38	n	0.12	3	23.0	3	26;20	y	0.00	0	39.0	0	32;46	n	0.04	2	44.0	2	47;41	y	0.02	1	44.0	1	41;47	n	0.05	1	18.5	1	19;18	n	0.00	0	39.0	0	31;47	n	0.00	0	23.5	0	15;32	n	0.09	3	30.5	3	28;33	y	0.08	3	36.0	3	34;38	y	0.06	2	32.5	2	26;39	y	0.00	0	37.0	0	42;32	n	ENSMUSG00000000439.10	Mkrn2	chr6	protein_coding	makorin, ring finger protein, 2
known_NIR_15227	chr6	115603927	115608176	-	115603927	115607602	5pMXE	ENSMUST00000124553.4	known	1.00	121	0	121	0	n	1.00	102	0	102	0	n	1.00	185	0	185	0	n	1.00	114	0	114	0	n	1.00	196	0	196	0	n	1.00	80	0	80	0	n	0.98	160	4	160	4	y	1.00	85	0	85	0	n	1.00	115	0	115	0	n	1.00	198	0	198	0	n	1.00	149	0	149	0	n	1.00	185	0	185	0	n	ENSMUSG00000000441.18	Raf1	chr6	protein_coding	v-raf-leukemia viral oncogene 1
known_NIR_15228	chr6	115603927	115609858	-	115608329	115609858	3pMXE	ENSMUST00000127503.2	known	0.01	1	131	1	131	n	0.05	5	90	5	90	y	0.00	1	212	1	212	n	0.00	0	113	0	113	n	0.02	5	221	5	221	y	0.02	2	98	2	98	y	0.00	0	180	0	180	n	0.00	0	105	0	105	n	0.00	0	124	0	124	n	0.01	3	226	3	226	y	0.00	0	123	0	123	n	0.01	3	202	3	202	y	ENSMUSG00000000441.18	Raf1	chr6	protein_coding	v-raf-leukemia viral oncogene 1
known_NIR_15229	chr6	115603927;115607661	115607602;115608176	-	115603927	115608176	cassetteExon	ENSMUST00000112949.8	known	0.00	0.0	121	0;0	121	n	0.00	0.0	102	0;0	102	n	0.01	1.5	185	0;3	185	n	0.00	0.0	114	0;0	114	n	0.00	0.0	196	0;0	196	n	0.00	0.0	80	0;0	80	n	0.02	4.0	160	4;4	160	y	0.00	0.0	85	0;0	85	n	0.00	0.0	115	0;0	115	n	0.00	0.0	198	0;0	198	n	0.01	1.0	149	0;2	149	n	0.00	0.0	185	0;0	185	n	ENSMUSG00000000441.18	Raf1	chr6	protein_coding	v-raf-leukemia viral oncogene 1
known_NIR_15230	chr6	115603927;115608329	115608176;115609858	-	115603927	115609858	cassetteExon	ENSMUST00000130528.8	known	0.99	126.0	1	121;131	1	n	0.95	96.0	5	102;90	5	y	0.99	198.5	1	185;212	1	n	1.00	113.5	0	114;113	0	n	0.98	208.5	5	196;221	5	y	0.98	89.0	2	80;98	2	y	1.00	170.0	0	160;180	0	n	1.00	95.0	0	85;105	0	n	1.00	119.5	0	115;124	0	n	0.99	212.0	3	198;226	3	y	1.00	136.0	0	149;123	0	n	0.98	193.5	3	185;202	3	y	ENSMUSG00000000441.18	Raf1	chr6	protein_coding	v-raf-leukemia viral oncogene 1
known_NIR_15231	chr6	115621603	115653197	-	115621603	115652650	5pMXE	ENSMUST00000112949.8	known	0.93	70	5	70	5	y	0.96	45	2	45	2	y	0.93	143	10	143	10	y	0.96	103	4	103	4	y	0.93	114	9	114	9	y	0.85	53	9	53	9	y	0.94	108	7	108	7	y	0.95	78	4	78	4	y	0.96	68	3	68	3	y	0.93	101	8	101	8	y	0.89	57	7	57	7	y	0.92	108	10	108	10	y	ENSMUSG00000000441.18	Raf1	chr6	protein_coding	v-raf-leukemia viral oncogene 1
known_NIR_15232	chr6	115893008	115893931	+	115893008	115893934	A3SS	ENSMUST00000112925.8	known	0.00	0	12	0	12	n	0.67	4	2	4	2	n	0.20	3	12	3	12	y	0.50	4	4	4	4	n	0.40	2	3	2	3	n	0.33	2	4	2	4	n	0.00	0	7	0	7	n	0.18	2	9	2	9	y	-	-	-	-	-	-	0.00	0	6	0	6	n	0.20	1	4	1	4	n	0.27	3	8	3	8	y	ENSMUSG00000030323.14	Ift122	chr6	protein_coding	intraflagellar transport 122
known_NIR_15233	chr6	116020766	116033487	-	116020766	116110728	A5SS	ENSMUST00000088896.10	known	0.08	1	12	1	12	n	0.50	2	2	2	2	n	0.00	0	26	0	26	n	0.16	3	16	3	16	y	0.06	2	34	2	34	y	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.29	5	12	5	12	y	0.10	2	19	2	19	y	0.18	3	14	3	14	y	0.00	0	15	0	15	n	ENSMUSG00000030126.18	Tmcc1	chr6	protein_coding	transmembrane and coiled coil domains 1
known_NIR_15234	chr6	116020766	116049973	-	116020766	116033487	5pMXE	ENSMUST00000172510.4	known	0.95	18	1	18	1	n	0.87	13	2	13	2	y	1.00	4	0	4	0	n	0.87	20	3	20	3	y	0.92	22	2	22	2	y	1.00	12	0	12	0	n	1.00	26	0	26	0	n	1.00	2	0	2	0	n	0.81	21	5	21	5	y	0.95	35	2	35	2	y	0.84	16	3	16	3	y	1.00	24	0	24	0	n	ENSMUSG00000030126.18	Tmcc1	chr6	protein_coding	transmembrane and coiled coil domains 1
known_NIR_15235	chr6	116020766	116049973	-	116020766	116078491	A5SS	ENSMUST00000032222.16	known	0.95	18	1	18	1	n	1.00	13	0	13	0	n	1.00	4	0	4	0	n	1.00	20	0	20	0	n	1.00	22	0	22	0	n	1.00	12	0	12	0	n	0.93	26	2	26	2	y	1.00	2	0	2	0	n	1.00	21	0	21	0	n	1.00	35	0	35	0	n	1.00	16	0	16	0	n	1.00	24	0	24	0	n	ENSMUSG00000030126.18	Tmcc1	chr6	protein_coding	transmembrane and coiled coil domains 1
known_NIR_15236	chr6	116020766	116049973	-	116020766	116110728	A5SS	ENSMUST00000088896.10	known	0.60	18	12	18	12	y	0.87	13	2	13	2	y	0.13	4	26	4	26	y	0.56	20	16	20	16	y	0.39	22	34	22	34	y	0.52	12	11	12	11	y	0.70	26	11	26	11	y	0.20	2	8	2	8	y	0.64	21	12	21	12	y	0.65	35	19	35	19	y	0.53	16	14	16	14	y	0.62	24	15	24	15	y	ENSMUSG00000030126.18	Tmcc1	chr6	protein_coding	transmembrane and coiled coil domains 1
known_NIR_15237	chr6	116108850	116110728	-	116020766	116110728	A3SS	ENSMUST00000088896.10	known	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.04	1	26	1	26	n	0.06	1	16	1	16	n	0.03	1	34	1	34	n	0.08	1	11	1	11	n	0.00	0	11	0	11	n	0.27	3	8	3	8	y	0.00	0	12	0	12	n	0.00	0	19	0	19	n	0.12	2	14	2	14	y	0.06	1	15	1	15	n	ENSMUSG00000030126.18	Tmcc1	chr6	protein_coding	transmembrane and coiled coil domains 1
known_NIR_15238	chr6	116185232	116185915	+	116185290	116185915	A5SS	ENSMUST00000036759.11	known	0.00	0	36	0	36	n	0.00	0	23	0	23	n	0.00	0	55	0	55	n	0.00	0	56	0	56	n	0.00	0	56	0	56	n	0.07	2	25	2	25	y	0.00	0	43	0	43	n	0.00	0	32	0	32	n	0.00	0	34	0	34	n	0.00	0	69	0	69	n	0.00	0	34	0	34	n	0.00	0	58	0	58	n	ENSMUSG00000024104.12	Washc2	chr6	protein_coding	WASH complex subunit 2`
known_NIR_15239	chr6	116185288	116185915	+	116185290	116185915	A5SS	ENSMUST00000036759.11	known	0.16	7	36	7	36	y	0.04	1	23	1	23	n	0.11	7	55	7	55	y	0.10	6	56	6	56	y	0.03	2	56	2	56	y	0.11	3	25	3	25	y	0.04	2	43	2	43	y	0.06	2	32	2	32	y	0.03	1	34	1	34	n	0.07	5	69	5	69	y	0.06	2	34	2	34	y	0.00	0	58	0	58	n	ENSMUSG00000024104.12	Washc2	chr6	protein_coding	WASH complex subunit 2`
known_NIR_15240	chr6	116243541	116250534	+	116241273	116250534	A5SS	ENSMUST00000222819.2	known	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	23	0	23	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.41	9	13	9	13	y	0.50	9	9	9	9	y	0.00	0	24	0	24	n	ENSMUSG00000042213.18	Zfand4	chr6	protein_coding	zinc finger, AN1-type domain 4
known_NIR_15241	chr6	116250833	116251777	+	116250833	116282578	A3SS	ENSMUST00000222494.2	known	0.36	4	7	4	7	y	1.00	3	0	3	0	n	1.00	4	0	4	0	n	0.00	0	7	0	7	n	0.25	4	12	4	12	y	0.00	0	4	0	4	n	0.80	4	1	4	1	n	0.67	4	2	4	2	n	0.18	2	9	2	9	y	0.22	2	7	2	7	n	0.20	1	4	1	4	n	0.36	5	9	5	9	y	ENSMUSG00000042213.18	Zfand4	chr6	protein_coding	zinc finger, AN1-type domain 4
known_NIR_15242	chr6	116250833	116261701	+	116250833	116264943	A3SS	ENSMUST00000221239.2	known	1.00	27	0	27	0	n	1.00	19	0	19	0	n	0.94	17	1	17	1	n	0.91	20	2	20	2	y	0.91	41	4	41	4	y	1.00	20	0	20	0	n	1.00	20	0	20	0	n	0.96	22	1	22	1	n	1.00	14	0	14	0	n	0.97	33	1	33	1	n	1.00	32	0	32	0	n	0.92	34	3	34	3	y	ENSMUSG00000042213.18	Zfand4	chr6	protein_coding	zinc finger, AN1-type domain 4
known_NIR_15243	chr6	116250833	116262815	+	116250833	116282578	A3SS	ENSMUST00000222494.2	known	0.30	3	7	3	7	y	-	-	-	-	-	-	-	-	-	-	-	-	0.36	4	7	4	7	y	0.20	3	12	3	12	y	0.00	0	4	0	4	n	0.80	4	1	4	1	n	0.00	0	2	0	2	n	0.18	2	9	2	9	y	0.30	3	7	3	7	y	0.60	6	4	6	4	y	0.31	4	9	4	9	y	ENSMUSG00000042213.18	Zfand4	chr6	protein_coding	zinc finger, AN1-type domain 4
known_NIR_15244	chr6	116250833	116262815	+	116261776	116262815	5pMXE	ENSMUST00000222144.2	known	0.09	3	31	3	31	y	0.00	0	19	0	19	n	0.00	0	20	0	20	n	0.19	4	17	4	17	y	0.09	3	29	3	29	y	0.00	0	12	0	12	n	0.21	4	15	4	15	y	0.00	0	17	0	17	n	0.14	2	12	2	12	y	0.12	3	23	3	23	y	0.15	6	33	6	33	y	0.08	4	45	4	45	y	ENSMUSG00000042213.18	Zfand4	chr6	protein_coding	zinc finger, AN1-type domain 4
known_NIR_15245	chr6	116250833	116264943	+	116250833;116262882	116262815;116264943	ES	ENSMUST00000222819.2	known	0.00	0	8.0	0	3;13	n	0.00	0	12.0	0	0;24	n	0.09	1	10.0	1	0;20	n	0.12	2	14.0	2	4;24	y	0.19	4	17.5	4	3;32	y	0.00	0	8.0	0	0;16	n	0.00	0	19.0	0	4;34	n	0.08	1	11.0	1	0;22	n	0.00	0	15.0	0	2;28	n	0.06	1	16.5	1	3;30	n	0.00	0	20.5	0	6;35	n	0.08	3	34.5	3	4;65	y	ENSMUSG00000042213.18	Zfand4	chr6	protein_coding	zinc finger, AN1-type domain 4
known_NIR_15246	chr6	116250833	116282578	+	116250833	116261701	A3SS&ES	ENSMUST00000223495.2	known	0.21	7	27	7	27	y	0.00	0	19	0	19	n	0.00	0	17	0	17	n	0.26	7	20	7	20	y	0.23	12	41	12	41	y	0.17	4	20	4	20	y	0.05	1	20	1	20	n	0.08	2	22	2	22	y	0.39	9	14	9	14	y	0.17	7	33	7	33	y	0.11	4	32	4	32	y	0.21	9	34	9	34	y	ENSMUSG00000042213.18	Zfand4	chr6	protein_coding	zinc finger, AN1-type domain 4
known_NIR_15247	chr6	116250833;116251986	116251777;116261701	+	116250833	116261701	cassetteExon	ENSMUST00000112900.9	known	0.07	2.0	27	4;0	27	n	0.14	3.0	19	3;3	19	y	0.11	2.0	17	4;0	17	n	0.00	0.0	20	0;0	20	n	0.07	3.0	41	4;2	41	y	0.02	0.5	20	0;1	20	n	0.09	2.0	20	4;0	20	n	0.12	3.0	22	4;2	22	y	0.12	2.0	14	2;2	14	y	0.03	1.0	33	2;0	33	n	0.06	2.0	32	1;3	32	n	0.09	3.5	34	5;2	34	y	ENSMUSG00000042213.18	Zfand4	chr6	protein_coding	zinc finger, AN1-type domain 4
known_NIR_15248	chr6	116250833;116261776	116261701;116262815	+	116250833	116262815	cassetteExon	ENSMUST00000222819.2	known	0.91	29.0	3	27;31	3	y	1.00	19.0	0	19;19	0	n	1.00	18.5	0	17;20	0	n	0.82	18.5	4	20;17	4	y	0.92	35.0	3	41;29	3	y	1.00	16.0	0	20;12	0	n	0.81	17.5	4	20;15	4	y	1.00	19.5	0	22;17	0	n	0.87	13.0	2	14;12	2	y	0.90	28.0	3	33;23	3	y	0.84	32.5	6	32;33	6	y	0.91	39.5	4	34;45	4	y	ENSMUSG00000042213.18	Zfand4	chr6	protein_coding	zinc finger, AN1-type domain 4
known_NIR_15249	chr6	116250833;116265129	116264943;116282578	+	116250833	116282578	cassetteExon	ENSMUST00000222494.2	known	0.52	7.5	7	0;15	7	n	1.00	2.5	0	0;5	0	n	1.00	7.5	0	1;14	0	n	0.71	17.0	7	2;32	7	y	0.59	17.5	12	4;31	12	y	0.62	6.5	4	0;13	4	n	0.91	10.5	1	0;21	1	n	0.78	7.0	2	1;13	2	n	0.47	8.0	9	0;16	9	n	0.64	12.5	7	1;24	7	n	0.73	11.0	4	0;22	4	n	0.68	19.5	9	3;36	9	y	ENSMUSG00000042213.18	Zfand4	chr6	protein_coding	zinc finger, AN1-type domain 4
known_NIR_15250	chr6	116250833;116265129	116264943;116305168	+	116250833;116292603	116282578;116305168	MXE	ENSMUST00000222494.2	known	0.00	0.0	13.0	0;0	7;19	n	0.00	0.0	10.5	0;0	0;21	n	0.04	0.5	12.5	1;0	0;25	n	0.04	1.0	25.5	2;0	7;44	n	0.07	2.0	25.0	4;0	12;38	n	0.00	0.0	10.5	0;0	4;17	n	0.00	0.0	15.5	0;0	1;30	n	0.03	0.5	15.0	1;0	2;28	n	0.00	0.0	21.5	0;0	9;34	n	0.05	1.0	20.0	1;1	7;33	n	0.00	0.0	21.5	0;0	4;39	n	0.07	2.5	32.5	3;2	9;56	y	ENSMUSG00000042213.18	Zfand4	chr6	protein_coding	zinc finger, AN1-type domain 4
known_NIR_15251	chr6	116263573	116264943	+	116262882	116264943	A5SS	ENSMUST00000222819.2	known	0.07	1	13	1	13	n	0.00	0	24	0	24	n	0.13	3	20	3	20	y	0.08	2	24	2	24	y	0.06	2	32	2	32	y	0.30	7	16	7	16	y	0.03	1	34	1	34	n	0.04	1	22	1	22	n	0.03	1	28	1	28	n	0.00	0	30	0	30	n	0.00	0	35	0	35	n	0.02	1	65	1	65	n	ENSMUSG00000042213.18	Zfand4	chr6	protein_coding	zinc finger, AN1-type domain 4
known_NIR_15252	chr6	116265129	116305168	+	116265129	116282578	3pMXE	ENSMUST00000220845.2	known	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.00	0	32	0	32	n	0.00	0	31	0	31	n	0.00	0	13	0	13	n	0.00	0	21	0	21	n	0.00	0	13	0	13	n	0.00	0	16	0	16	n	0.04	1	24	1	24	n	0.00	0	22	0	22	n	0.05	2	36	2	36	y	ENSMUSG00000042213.18	Zfand4	chr6	protein_coding	zinc finger, AN1-type domain 4
known_NIR_15253	chr6	116265129	116305168	+	116292603	116305168	A5SS&ES	ENSMUST00000112900.9	known	0.00	0	19	0	19	n	0.00	0	21	0	21	n	0.00	0	25	0	25	n	0.00	0	44	0	44	n	0.00	0	38	0	38	n	0.00	0	17	0	17	n	0.00	0	30	0	30	n	0.00	0	28	0	28	n	0.00	0	34	0	34	n	0.03	1	33	1	33	n	0.00	0	39	0	39	n	0.03	2	56	2	56	y	ENSMUSG00000042213.18	Zfand4	chr6	protein_coding	zinc finger, AN1-type domain 4
known_NIR_15254	chr6	116315176	116353654	+	116315176;116315451	116315347;116353654	ES	ENSMUST00000079012.13	known	0.25	10	30.0	10	9;51	y	0.25	7	20.5	7	9;32	y	0.34	18	35.5	18	7;64	y	0.23	13	44.0	13	16;72	y	0.15	9	49.5	9	12;87	y	0.12	3	22.0	3	6;38	y	0.26	12	35.0	12	11;59	y	0.21	4	15.0	4	7;23	y	0.25	9	26.5	9	10;43	y	0.30	26	59.5	26	14;105	y	0.33	13	27.0	13	8;46	y	0.24	12	38.0	12	12;64	y	ENSMUSG00000025702.16	Marchf8	chr6	protein_coding	membrane associated ring-CH-type finger 8
known_NIR_15255	chr6	116315176	116353654	+	116315451	116353654	A5SS	ENSMUST00000101032.10	known	0.16	10	51	10	51	y	0.18	7	32	7	32	y	0.22	18	64	18	64	y	0.15	13	72	13	72	y	0.09	9	87	9	87	y	0.07	3	38	3	38	y	0.17	12	59	12	59	y	0.15	4	23	4	23	y	0.17	9	43	9	43	y	0.20	26	105	26	105	y	0.22	13	46	13	46	y	0.16	12	64	12	64	y	ENSMUSG00000025702.16	Marchf8	chr6	protein_coding	membrane associated ring-CH-type finger 8
known_NIR_15256	chr6	116315176;116315451	116315347;116369485	+	116315176;116353824	116353654;116369485	MXE	ENSMUST00000204657.3	known	0.17	7.5	36.5	9;6	10;63	y	0.19	7.0	30.5	9;5	7;54	y	0.18	8.5	38.0	7;10	18;58	y	0.18	12.5	55.5	16;9	13;98	y	0.12	10.0	76.5	12;8	9;144	y	0.19	6.0	25.0	6;6	3;47	y	0.10	6.5	58.0	11;2	12;104	y	0.15	4.0	23.5	7;1	4;43	n	0.19	7.5	31.0	10;5	9;53	y	0.10	9.5	88.5	14;5	26;151	y	0.12	5.5	41.0	8;3	13;69	y	0.12	7.5	54.0	12;3	12;96	y	ENSMUSG00000025702.16	Marchf8	chr6	protein_coding	membrane associated ring-CH-type finger 8
known_NIR_15257	chr6	116315451	116353097	+	116315451	116369485	A3SS	ENSMUST00000203193.3	known	0.14	1	6	1	6	n	0.17	1	5	1	5	n	0.17	2	10	2	10	y	0.36	5	9	5	9	y	0.20	2	8	2	8	y	0.25	2	6	2	6	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.17	1	5	1	5	n	0.58	7	5	7	5	y	0.50	3	3	3	3	n	0.57	4	3	4	3	n	ENSMUSG00000025702.16	Marchf8	chr6	protein_coding	membrane associated ring-CH-type finger 8
known_NIR_15258	chr6	116315451	116369485	+	116315451;116353824	116353654;116369485	ES	ENSMUST00000079012.13	known	0.10	6	57.0	6	51;63	y	0.10	5	43.0	5	32;54	y	0.14	10	61.0	10	64;58	y	0.10	9	85.0	9	72;98	y	0.06	8	115.5	8	87;144	y	0.12	6	42.5	6	38;47	y	0.02	2	81.5	2	59;104	y	0.03	1	33.0	1	23;43	n	0.09	5	48.0	5	43;53	y	0.04	5	128.0	5	105;151	y	0.05	3	57.5	3	46;69	y	0.04	3	80.0	3	64;96	y	ENSMUSG00000025702.16	Marchf8	chr6	protein_coding	membrane associated ring-CH-type finger 8
known_NIR_15259	chr6	116315451	116369485	+	116353824	116369485	5pMXE	ENSMUST00000130445.8	known	0.09	6	63	6	63	y	0.08	5	54	5	54	y	0.15	10	58	10	58	y	0.08	9	98	9	98	y	0.05	8	144	8	144	y	0.11	6	47	6	47	y	0.02	2	104	2	104	y	0.02	1	43	1	43	n	0.09	5	53	5	53	y	0.03	5	151	5	151	y	0.04	3	69	3	69	y	0.03	3	96	3	96	y	ENSMUSG00000025702.16	Marchf8	chr6	protein_coding	membrane associated ring-CH-type finger 8
known_NIR_15260	chr6	116315451;116353136	116353097;116353654	+	116315451	116353654	cassetteExon	ENSMUST00000079012.13	known	0.01	0.5	51	1;0	51	n	0.03	1.0	32	1;1	32	n	0.02	1.5	64	2;1	64	n	0.08	6.5	72	5;8	72	y	0.03	2.5	87	2;3	87	y	0.05	2.0	38	2;2	38	y	0.01	0.5	59	0;1	59	n	0.06	1.5	23	1;2	23	n	0.04	2.0	43	1;3	43	n	0.05	6.0	105	7;5	105	y	0.04	2.0	46	3;1	46	n	0.06	4.0	64	4;4	64	y	ENSMUSG00000025702.16	Marchf8	chr6	protein_coding	membrane associated ring-CH-type finger 8
known_NIR_15261	chr6	116353136	116353654	+	116315176	116353654	A5SS	ENSMUST00000204657.3	known	0.00	0	10	0	10	n	0.12	1	7	1	7	n	0.05	1	18	1	18	n	0.38	8	13	8	13	y	0.25	3	9	3	9	y	0.40	2	3	2	3	n	0.08	1	12	1	12	n	0.33	2	4	2	4	n	0.25	3	9	3	9	y	0.16	5	26	5	26	y	0.07	1	13	1	13	n	0.25	4	12	4	12	y	ENSMUSG00000025702.16	Marchf8	chr6	protein_coding	membrane associated ring-CH-type finger 8
known_NIR_15262	chr6	116363265	116369485	+	116315451	116369485	A5SS	ENSMUST00000203193.3	known	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.09	1	10	1	10	n	0.10	1	9	1	9	n	0.20	2	8	2	8	y	0.00	0	6	0	6	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	ENSMUSG00000025702.16	Marchf8	chr6	protein_coding	membrane associated ring-CH-type finger 8
known_NIR_15263	chr6	116363265	116369485	+	116353824	116369485	A5SS	ENSMUST00000079012.13	known	0.00	0	63	0	63	n	0.00	0	54	0	54	n	0.02	1	58	1	58	n	0.01	1	98	1	98	n	0.01	2	144	2	144	y	0.00	0	47	0	47	n	0.01	1	104	1	104	n	0.00	0	43	0	43	n	0.00	0	53	0	53	n	0.01	1	151	1	151	n	0.00	0	69	0	69	n	0.01	1	96	1	96	n	ENSMUSG00000025702.16	Marchf8	chr6	protein_coding	membrane associated ring-CH-type finger 8
known_NIR_15264	chr6	116378083	116378298	+	116378083	116380381	A3SS	ENSMUST00000079012.13	known	0.03	2	70	2	70	y	0.00	0	45	0	45	n	0.00	0	87	0	87	n	0.02	2	120	2	120	y	0.01	2	174	2	174	y	0.04	2	53	2	53	y	0.01	2	133	2	133	y	0.00	0	84	0	84	n	0.01	1	79	1	79	n	0.01	1	156	1	156	n	0.00	0	101	0	101	n	0.03	3	117	3	117	y	ENSMUSG00000025702.16	Marchf8	chr6	protein_coding	membrane associated ring-CH-type finger 8
known_NIR_15265	chr6	116378083	116380381	+	116378083;116379143	116378298;116380381	ES	ENSMUST00000123405.8	known	0.99	70	1.0	70	2;0	n	1.00	45	0.0	45	0;0	n	0.95	87	4.5	87	0;9	n	0.97	120	4.0	120	2;6	y	0.95	174	8.5	174	2;15	y	0.98	53	1.0	53	2;0	n	0.96	133	6.0	133	2;10	y	0.95	84	4.5	84	0;9	n	0.98	79	1.5	79	1;2	n	0.95	156	7.5	156	1;14	n	0.98	101	2.0	101	0;4	n	0.96	117	5.0	117	3;7	y	ENSMUSG00000025702.16	Marchf8	chr6	protein_coding	membrane associated ring-CH-type finger 8
known_NIR_15266	chr6	116379143	116380381	+	116378083	116380381	A5SS	ENSMUST00000079012.13	known	0.00	0	70	0	70	n	0.00	0	45	0	45	n	0.09	9	87	9	87	y	0.05	6	120	6	120	y	0.08	15	174	15	174	y	0.00	0	53	0	53	n	0.07	10	133	10	133	y	0.10	9	84	9	84	y	0.02	2	79	2	79	y	0.08	14	156	14	156	y	0.04	4	101	4	101	y	0.06	7	117	7	117	y	ENSMUSG00000025702.16	Marchf8	chr6	protein_coding	membrane associated ring-CH-type finger 8
known_NIR_15267	chr6	116604094	116605370	-	116604094	116605892	A5SS	ENSMUST00000079749.6	known	0.09	1	10	1	10	n	0.00	0	8	0	8	n	0.20	2	8	2	8	y	0.06	1	15	1	15	n	0.00	0	30	0	30	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.12	2	15	2	15	y	0.00	0	17	0	17	n	0.05	1	18	1	18	n	ENSMUSG00000059878.13	Zfp422	chr6	protein_coding	zinc finger protein 422
known_NIR_15268	chr6	116604094	116605739	-	116604094	116605892	A5SS	ENSMUST00000079749.6	known	0.47	9	10	9	10	y	0.33	4	8	4	8	y	0.20	2	8	2	8	y	0.17	3	15	3	15	y	0.19	7	30	7	30	y	0.31	5	11	5	11	y	0.32	6	13	6	13	y	0.27	4	11	4	11	y	0.33	4	8	4	8	y	0.25	5	15	5	15	y	0.11	2	17	2	17	y	0.14	3	18	3	18	y	ENSMUSG00000059878.13	Zfp422	chr6	protein_coding	zinc finger protein 422
known_NIR_15269	chr6	116627806	116628657	+	116627806	116628654	A3SS	ENSMUST00000067354.10	known	0.08	10	115	10	115	y	0.06	5	75	5	75	y	0.15	31	179	31	179	y	0.15	44	245	44	245	y	0.14	54	335	54	335	y	0.23	38	128	38	128	y	0.16	34	173	34	173	y	0.12	24	169	24	169	y	0.21	36	133	36	133	y	0.14	31	184	31	184	y	0.15	60	344	60	344	y	0.17	45	224	45	224	y	ENSMUSG00000048489.13	Depp1	chr6	protein_coding	DEPP1 autophagy regulator
known_NIR_15270	chr6	117150539	117153047	+	117150539	117155544	A3SS	ENSMUST00000112871.8	known	0.02	7	290	7	290	y	0.01	1	171	1	171	n	0.04	9	205	9	205	y	0.02	8	451	8	451	y	0.01	4	473	4	473	y	0.00	0	85	0	85	n	0.02	6	326	6	326	y	0.01	1	143	1	143	n	0.01	3	247	3	247	y	0.02	8	505	8	505	y	0.01	4	298	4	298	y	0.01	4	350	4	350	y	ENSMUSG00000061353.12	Cxcl12	chr6	protein_coding	chemokine (C-X-C motif) ligand 12
known_NIR_15271	chr6	117818358	117820214	+	117818229	117820214	A5SS	ENSMUST00000127593.8	known	0.19	4	17	4	17	y	0.58	15	11	15	11	y	0.39	12	19	12	19	y	0.33	9	18	9	18	y	0.29	11	27	11	27	y	0.29	4	10	4	10	y	0.33	11	22	11	22	y	0.45	13	16	13	16	y	0.31	11	24	11	24	y	0.39	12	19	12	19	y	0.26	8	23	8	23	y	0.52	12	11	12	11	y	ENSMUSG00000059689.16	Zfp637	chr6	protein_coding	zinc finger protein 637
known_NIR_15272	chr6	117820353	117821986	+	117820353	117821944	A3SS	ENSMUST00000137224.8	known	0.88	46	6	46	6	y	0.87	27	4	27	4	y	0.92	33	3	33	3	y	0.82	53	12	53	12	y	0.75	44	15	44	15	y	0.90	27	3	27	3	y	0.81	76	18	76	18	y	0.78	25	7	25	7	y	0.98	42	1	42	1	n	0.89	54	7	54	7	y	0.80	44	11	44	11	y	0.95	40	2	40	2	y	ENSMUSG00000059689.16	Zfp637	chr6	protein_coding	zinc finger protein 637
known_NIR_15273	chr6	117820353	117821986	+	117820357	117821986	A5SS	ENSMUST00000112859.8	known	0.72	46	18	46	18	y	0.66	27	14	27	14	y	0.70	33	14	33	14	y	0.76	53	17	53	17	y	0.69	44	20	44	20	y	0.57	27	20	27	20	y	0.81	76	18	76	18	y	0.68	25	12	25	12	y	0.76	42	13	42	13	y	0.77	54	16	54	16	y	0.73	44	16	44	16	y	0.73	40	15	40	15	y	ENSMUSG00000059689.16	Zfp637	chr6	protein_coding	zinc finger protein 637
known_NIR_15274	chr6	117820567	117821986	+	117820353	117821986	A5SS	ENSMUST00000164472.8	known	0.02	1	46	1	46	n	0.04	1	27	1	27	n	0.03	1	33	1	33	n	0.02	1	53	1	53	n	0.00	0	44	0	44	n	0.00	0	27	0	27	n	0.01	1	76	1	76	n	0.17	5	25	5	25	y	0.00	0	42	0	42	n	0.07	4	54	4	54	y	0.08	4	44	4	44	y	0.00	0	40	0	40	n	ENSMUSG00000059689.16	Zfp637	chr6	protein_coding	zinc finger protein 637
known_NIR_15275	chr6	117820567	117821986	+	117820357	117821986	A5SS	ENSMUST00000112859.8	known	0.05	1	18	1	18	n	0.07	1	14	1	14	n	0.07	1	14	1	14	n	0.06	1	17	1	17	n	0.00	0	20	0	20	n	0.00	0	20	0	20	n	0.05	1	18	1	18	n	0.29	5	12	5	12	y	0.00	0	13	0	13	n	0.20	4	16	4	16	y	0.20	4	16	4	16	y	0.00	0	15	0	15	n	ENSMUSG00000059689.16	Zfp637	chr6	protein_coding	zinc finger protein 637
known_NIR_15276	chr6	117883800	117894431	+	117877467	117894431	A5SS	ENSMUST00000177743.8	known	1.00	33	0	33	0	n	0.94	16	1	16	1	n	1.00	64	0	64	0	n	1.00	35	0	35	0	n	1.00	46	0	46	0	n	0.97	30	1	30	1	n	0.93	26	2	26	2	y	1.00	23	0	23	0	n	1.00	34	0	34	0	n	1.00	41	0	41	0	n	1.00	31	0	31	0	n	1.00	41	0	41	0	n	ENSMUSG00000042079.14	Hnrnpf	chr6	protein_coding	heterogeneous nuclear ribonucleoprotein F
known_NIR_15277	chr6	117883800	117894431	+	117883800;117884169	117884110;117894431	ES	ENSMUST00000179224.8	known	0.57	33	25.0	33	0;50	n	0.41	16	23.0	16	0;46	n	0.56	64	50.5	64	0;101	n	0.50	35	35.5	35	0;71	n	0.52	46	42.0	46	1;83	n	0.67	30	15.0	30	0;30	n	0.39	26	41.0	26	0;82	n	0.54	23	19.5	23	0;39	n	0.65	34	18.5	34	0;37	n	0.55	41	34.0	41	2;66	y	0.60	31	21.0	31	0;42	n	0.55	41	33.5	41	0;67	n	ENSMUSG00000042079.14	Hnrnpf	chr6	protein_coding	heterogeneous nuclear ribonucleoprotein F
known_NIR_15278	chr6	117883800	117894431	+	117884169	117894431	5pMXE	ENSMUST00000163168.9	known	0.40	33	50	33	50	y	0.26	16	46	16	46	y	0.39	64	101	64	101	y	0.33	35	71	35	71	y	0.36	46	83	46	83	y	0.50	30	30	30	30	y	0.24	26	82	26	82	y	0.37	23	39	23	39	y	0.48	34	37	34	37	y	0.38	41	66	41	66	y	0.42	31	42	31	42	y	0.38	41	67	41	67	y	ENSMUSG00000042079.14	Hnrnpf	chr6	protein_coding	heterogeneous nuclear ribonucleoprotein F
known_NIR_15279	chr6	117884169	117894431	+	117877467	117894431	A5SS	ENSMUST00000177743.8	known	1.00	50	0	50	0	n	0.98	46	1	46	1	n	1.00	101	0	101	0	n	1.00	71	0	71	0	n	1.00	83	0	83	0	n	0.97	30	1	30	1	n	0.98	82	2	82	2	y	1.00	39	0	39	0	n	1.00	37	0	37	0	n	1.00	66	0	66	0	n	1.00	42	0	42	0	n	1.00	67	0	67	0	n	ENSMUSG00000042079.14	Hnrnpf	chr6	protein_coding	heterogeneous nuclear ribonucleoprotein F
known_NIR_15280	chr6	117894032	117894431	+	117877467	117894431	A5SS	ENSMUST00000177743.8	known	1.00	27	0	27	0	n	0.96	23	1	23	1	n	1.00	28	0	28	0	n	1.00	47	0	47	0	n	1.00	56	0	56	0	n	0.96	25	1	25	1	n	0.95	41	2	41	2	y	1.00	41	0	41	0	n	1.00	30	0	30	0	n	1.00	37	0	37	0	n	1.00	27	0	27	0	n	1.00	58	0	58	0	n	ENSMUSG00000042079.14	Hnrnpf	chr6	protein_coding	heterogeneous nuclear ribonucleoprotein F
known_NIR_15281	chr6	117894032	117894431	+	117883800	117894431	A5SS	ENSMUST00000035493.14	known	0.45	27	33	27	33	y	0.59	23	16	23	16	y	0.30	28	64	28	64	y	0.57	47	35	47	35	y	0.55	56	46	56	46	y	0.45	25	30	25	30	y	0.61	41	26	41	26	y	0.64	41	23	41	23	y	0.47	30	34	30	34	y	0.47	37	41	37	41	y	0.47	27	31	27	31	y	0.59	58	41	58	41	y	ENSMUSG00000042079.14	Hnrnpf	chr6	protein_coding	heterogeneous nuclear ribonucleoprotein F
known_NIR_15282	chr6	117894032	117894431	+	117884169	117894431	A5SS	ENSMUST00000179224.8	known	0.35	27	50	27	50	y	0.33	23	46	23	46	y	0.22	28	101	28	101	y	0.40	47	71	47	71	y	0.40	56	83	56	83	y	0.45	25	30	25	30	y	0.33	41	82	41	82	y	0.51	41	39	41	39	y	0.45	30	37	30	37	y	0.36	37	66	37	66	y	0.39	27	42	27	42	y	0.46	58	67	58	67	y	ENSMUSG00000042079.14	Hnrnpf	chr6	protein_coding	heterogeneous nuclear ribonucleoprotein F
known_NIR_15283	chr6	11906076	11907323	-	11906107	11907323	A3SS	ENSMUST00000204978.3	known	0.01	37	2738	37	2738	y	0.01	36	2791	36	2791	y	0.01	26	2817	26	2817	y	0.01	40	2837	40	2837	y	0.01	35	2967	35	2967	y	0.01	9	1394	9	1394	y	0.01	47	3448	47	3448	y	0.01	9	1576	9	1576	y	0.01	39	2744	39	2744	y	0.01	48	3880	48	3880	y	0.01	27	3330	27	3330	y	0.01	35	3690	35	3690	y	ENSMUSG00000029632.8	Ndufa4	chr6	protein_coding	Ndufa4, mitochondrial complex associated
known_NIR_15284	chr6	11906079	11907323	-	11906076	11907323	A3SS	ENSMUST00000204084.3	known	0.05	2	37	2	37	y	0.05	2	36	2	36	y	0.07	2	26	2	26	y	0.00	0	40	0	40	n	0.00	0	35	0	35	n	0.00	0	9	0	9	n	0.04	2	47	2	47	y	0.00	0	9	0	9	n	0.00	0	39	0	39	n	0.02	1	48	1	48	n	0.00	0	27	0	27	n	0.00	0	35	0	35	n	ENSMUSG00000029632.8	Ndufa4	chr6	protein_coding	Ndufa4, mitochondrial complex associated
known_NIR_15285	chr6	11906079	11907323	-	11906107	11907323	A3SS	ENSMUST00000204978.3	known	0.00	2	2738	2	2738	y	0.00	2	2791	2	2791	y	0.00	2	2817	2	2817	y	0.00	0	2837	0	2837	n	0.00	0	2967	0	2967	n	0.00	0	1394	0	1394	n	0.00	2	3448	2	3448	y	0.00	0	1576	0	1576	n	0.00	0	2744	0	2744	n	0.00	1	3880	1	3880	n	0.00	0	3330	0	3330	n	0.00	0	3690	0	3690	n	ENSMUSG00000029632.8	Ndufa4	chr6	protein_coding	Ndufa4, mitochondrial complex associated
known_NIR_15286	chr6	11926291	11926726	+	11908016	11926726	A5SS	ENSMUST00000155037.4	known	0.85	17	3	17	3	y	0.69	11	5	11	5	y	0.72	23	9	23	9	y	0.82	18	4	18	4	y	0.92	36	3	36	3	y	0.88	7	1	7	1	n	0.85	22	4	22	4	y	0.72	21	8	21	8	y	0.90	18	2	18	2	y	0.83	30	6	30	6	y	1.00	9	0	9	0	n	0.73	22	8	22	8	y	ENSMUSG00000029629.18	Phf14	chr6	protein_coding	PHD finger protein 14
known_NIR_15287	chr6	11926836	11941429	+	11926836	11933252	3pMXE	ENSMUST00000155037.4	known	0.00	0	13	0	13	n	0.19	3	13	3	13	y	0.42	13	18	13	18	y	0.22	6	21	6	21	y	0.18	7	32	7	32	y	0.53	8	7	8	7	y	0.14	5	30	5	30	y	0.26	7	20	7	20	y	0.12	2	15	2	15	y	0.21	8	31	8	31	y	0.27	4	11	4	11	y	0.27	8	22	8	22	y	ENSMUSG00000029629.18	Phf14	chr6	protein_coding	PHD finger protein 14
known_NIR_15288	chr6	11926836	11941429	+	11926836;11934018	11933252;11941429	ES	ENSMUST00000115510.8	known	0.00	0	13.5	0	13;14	n	0.18	3	14.0	3	13;15	y	0.41	13	19.0	13	18;20	y	0.20	6	24.5	6	21;28	y	0.16	7	37.5	7	32;43	y	0.52	8	7.5	8	7;8	y	0.14	5	29.5	5	30;29	y	0.25	7	21.5	7	20;23	y	0.11	2	15.5	2	15;16	y	0.18	8	37.5	8	31;44	y	0.30	4	9.5	4	11;8	y	0.23	8	26.5	8	22;31	y	ENSMUSG00000029629.18	Phf14	chr6	protein_coding	PHD finger protein 14
known_NIR_15289	chr6	11934018	11941429	+	11926836	11941429	A5SS	ENSMUST00000203459.3	known	1.00	14	0	14	0	n	0.83	15	3	15	3	y	0.61	20	13	20	13	y	0.82	28	6	28	6	y	0.86	43	7	43	7	y	0.50	8	8	8	8	y	0.85	29	5	29	5	y	0.77	23	7	23	7	y	0.89	16	2	16	2	y	0.85	44	8	44	8	y	0.67	8	4	8	4	y	0.79	31	8	31	8	y	ENSMUSG00000029629.18	Phf14	chr6	protein_coding	PHD finger protein 14
known_NIR_15290	chr6	119347369	119365443	-	119347369	119394381	A5SS	ENSMUST00000032272.13	known	0.23	46	154	46	154	y	0.25	29	87	29	87	y	0.16	94	493	94	493	y	0.19	65	286	65	286	y	0.23	120	401	120	401	y	0.23	75	253	75	253	y	0.17	82	403	82	403	y	0.27	84	222	84	222	y	0.17	46	222	46	222	y	0.14	75	452	75	452	y	0.16	45	233	45	233	y	0.25	85	255	85	255	y	ENSMUSG00000030168.14	Adipor2	chr6	protein_coding	adiponectin receptor 2
known_NIR_15291	chr6	119347369	119377684	-	119347369	119365443	5pMXE	ENSMUST00000169744.8	known	0.04	2	46	2	46	y	0.00	0	29	0	29	n	0.03	3	94	3	94	y	0.02	1	65	1	65	n	0.06	7	120	7	120	y	0.06	5	75	5	75	y	0.00	0	82	0	82	n	0.02	2	84	2	84	y	0.08	4	46	4	46	y	0.04	3	75	3	75	y	0.13	7	45	7	45	y	0.03	3	85	3	85	y	ENSMUSG00000030168.14	Adipor2	chr6	protein_coding	adiponectin receptor 2
known_NIR_15292	chr6	119347369	119377684	-	119347369	119394381	A5SS	ENSMUST00000032272.13	known	0.01	2	154	2	154	y	0.00	0	87	0	87	n	0.01	3	493	3	493	y	0.00	1	286	1	286	n	0.02	7	401	7	401	y	0.02	5	253	5	253	y	0.00	0	403	0	403	n	0.01	2	222	2	222	y	0.02	4	222	4	222	y	0.01	3	452	3	452	y	0.03	7	233	7	233	y	0.01	3	255	3	255	y	ENSMUSG00000030168.14	Adipor2	chr6	protein_coding	adiponectin receptor 2
known_NIR_15293	chr6	119671692	119699134	-	119671692;119690772	119690641;119699134	ES	ENSMUST00000183703.8	known	0.00	0	25.5	0	24;27	n	0.07	1	12.5	1	20;5	n	0.00	0	43.0	0	42;44	n	0.10	4	34.5	4	26;43	y	0.02	1	44.5	1	42;47	n	0.00	0	21.0	0	18;24	n	0.00	0	26.5	0	27;26	n	0.00	0	37.0	0	47;27	n	0.03	1	29.5	1	25;34	n	0.00	0	42.5	0	47;38	n	0.00	0	22.5	0	22;23	n	0.00	0	29.0	0	37;21	n	ENSMUSG00000030172.16	Erc1	chr6	protein_coding	ELKS/RAB6-interacting/CAST family member 1
known_NIR_15294	chr6	119699269	119720249	-	119699269;119711053	119711042;119720249	ES	ENSMUST00000183703.8	known	0.92	24	2.0	24	2;2	y	1.00	14	0.0	14	0;0	n	1.00	38	0.0	38	0;0	n	0.97	39	1.0	39	1;1	n	0.99	38	0.5	38	0;1	n	1.00	22	0.0	22	0;0	n	1.00	37	0.0	37	0;0	n	1.00	24	0.0	24	0;0	n	1.00	25	0.0	25	0;0	n	1.00	25	0.0	25	0;0	n	1.00	21	0.0	21	0;0	n	0.99	33	0.5	33	0;1	n	ENSMUSG00000030172.16	Erc1	chr6	protein_coding	ELKS/RAB6-interacting/CAST family member 1
known_NIR_15295	chr6	119750862	119756438	-	119750862;119755032	119754949;119756438	ES	ENSMUST00000183703.8	known	0.10	2	18.0	2	18;18	y	0.07	1	14.0	1	20;8	n	0.17	5	24.0	5	25;23	y	0.04	1	26.5	1	33;20	n	0.11	4	33.0	4	36;30	y	0.08	1	11.0	1	19;3	n	0.12	2	14.5	2	17;12	y	0.10	2	18.0	2	21;15	y	0.32	3	6.5	3	8;5	y	0.13	3	20.5	3	24;17	y	0.31	6	13.5	6	18;9	y	0.16	4	21.0	4	22;20	y	ENSMUSG00000030172.16	Erc1	chr6	protein_coding	ELKS/RAB6-interacting/CAST family member 1
known_NIR_15296	chr6	119802170	119824838	-	119802170;119802780	119802642;119824838	ES	ENSMUST00000183703.8	known	0.13	1	6.5	1	10;3	n	0.33	1	2.0	1	4;0	n	0.18	3	14.0	3	17;11	y	0.30	5	11.5	5	17;6	y	0.07	1	13.5	1	17;10	n	0.00	0	8.0	0	11;5	n	0.35	3	5.5	3	7;4	y	0.00	0	7.0	0	7;7	n	0.00	0	6.0	0	8;4	n	0.21	2	7.5	2	11;4	y	0.40	3	4.5	3	5;4	y	0.50	4	4.0	4	4;4	y	ENSMUSG00000030172.16	Erc1	chr6	protein_coding	ELKS/RAB6-interacting/CAST family member 1
known_NIR_15297	chr6	119897989	119899436	+	119897989	119899433	A3SS	ENSMUST00000162461.7	known	0.14	1	6	1	6	n	0.09	1	10	1	10	n	0.00	0	9	0	9	n	0.17	1	5	1	5	n	0.33	4	8	4	8	y	0.17	2	10	2	10	y	0.18	3	14	3	14	y	0.11	1	8	1	8	n	0.00	0	9	0	9	n	0.35	6	11	6	11	y	0.08	1	12	1	12	n	0.18	2	9	2	9	y	ENSMUSG00000030166.15	Rad52	chr6	protein_coding	RAD52 homolog, DNA repair protein
known_NIR_15298	chr6	119909722	119911217	-	119904195	119911217	A3SS	ENSMUST00000060043.13	known	0.00	0	57	0	57	n	0.00	0	45	0	45	n	0.00	0	92	0	92	n	0.00	0	55	0	55	n	0.00	0	92	0	92	n	0.00	0	62	0	62	n	0.06	5	73	5	73	y	0.00	0	73	0	73	n	0.00	0	34	0	34	n	0.00	0	83	0	83	n	0.00	0	51	0	51	n	0.00	0	72	0	72	n	ENSMUSG00000045962.17	Wnk1	chr6	protein_coding	WNK lysine deficient protein kinase 1
known_NIR_15299	chr6	119920827	119923198	-	119920827;119921745	119921662;119923198	ES	ENSMUST00000060043.13	known	0.00	0	45.5	0	44;47	n	0.12	4	29.5	4	24;35	y	0.01	1	79.0	1	84;74	n	0.02	1	50.0	1	57;43	n	0.04	3	80.5	3	78;83	y	0.07	3	37.5	3	38;37	y	0.04	3	67.0	3	59;75	y	0.10	4	35.5	4	37;34	y	0.00	0	39.5	0	45;34	n	0.09	7	68.5	7	77;60	y	0.03	1	34.5	1	37;32	n	0.00	0	62.5	0	69;56	n	ENSMUSG00000045962.17	Wnk1	chr6	protein_coding	WNK lysine deficient protein kinase 1
known_NIR_15300	chr6	119928956	119933032	-	119929930	119933032	3pMXE	ENSMUST00000161048.8	known	0.53	8	7	8	7	y	0.25	3	9	3	9	y	0.61	20	13	20	13	y	0.48	10	11	10	11	y	0.59	30	21	30	21	y	0.44	14	18	14	18	y	0.60	15	10	15	10	y	0.58	14	10	14	10	y	0.39	9	14	9	14	y	0.57	17	13	17	13	y	0.71	12	5	12	5	y	0.50	13	13	13	13	y	ENSMUSG00000045962.17	Wnk1	chr6	protein_coding	WNK lysine deficient protein kinase 1
known_NIR_15301	chr6	119928956;119929930	119929646;119933032	-	119928956	119933032	cassetteExon	ENSMUST00000177761.8	known	0.50	8.0	8	9;7	8	y	0.67	6.0	3	3;9	3	y	0.49	19.0	20	25;13	20	y	0.55	12.0	10	13;11	10	y	0.41	20.5	30	20;21	30	y	0.54	16.5	14	15;18	14	y	0.43	11.5	15	13;10	15	y	0.45	11.5	14	13;10	14	y	0.63	15.5	9	17;14	9	y	0.42	12.5	17	12;13	17	y	0.29	5.0	12	5;5	12	y	0.47	11.5	13	10;13	13	y	ENSMUSG00000045962.17	Wnk1	chr6	protein_coding	WNK lysine deficient protein kinase 1
known_NIR_15302	chr6	119929930	119933032	-	119929930;119931193	119930732;119933032	ES	ENSMUST00000060043.13	known	1.00	7	0.0	7	0;0	n	1.00	9	0.0	9	0;0	n	0.93	13	1.0	13	0;2	n	0.96	11	0.5	11	1;0	n	1.00	21	0.0	21	0;0	n	1.00	18	0.0	18	0;0	n	0.69	10	4.5	10	6;3	y	0.91	10	1.0	10	2;0	n	1.00	14	0.0	14	0;0	n	0.96	13	0.5	13	1;0	n	1.00	5	0.0	5	0;0	n	0.93	13	1.0	13	1;1	n	ENSMUSG00000045962.17	Wnk1	chr6	protein_coding	WNK lysine deficient protein kinase 1
known_NIR_15303	chr6	119931193	119933032	-	119928956	119933032	A3SS	ENSMUST00000177761.8	known	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.09	2	20	2	20	y	0.00	0	10	0	10	n	0.00	0	30	0	30	n	0.00	0	14	0	14	n	0.17	3	15	3	15	y	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.00	0	12	0	12	n	0.07	1	13	1	13	n	ENSMUSG00000045962.17	Wnk1	chr6	protein_coding	WNK lysine deficient protein kinase 1
known_NIR_15304	chr6	12007105	12047826	+	12007105	12007704	3pMXE	ENSMUST00000115510.8	known	0.98	60	1	60	1	n	0.98	54	1	54	1	n	0.98	57	1	57	1	n	1.00	54	0	54	0	n	1.00	71	0	71	0	n	0.97	31	1	31	1	n	0.97	74	2	74	2	y	1.00	29	0	29	0	n	0.97	39	1	39	1	n	0.96	67	3	67	3	y	1.00	80	0	80	0	n	0.95	61	3	61	3	y	ENSMUSG00000029629.18	Phf14	chr6	protein_coding	PHD finger protein 14
known_NIR_15305	chr6	120306420	120311730	-	120308992	120311730	3pMXE	ENSMUST00000144131.8	known	0.00	0	7	0	7	n	-	-	-	-	-	-	0.12	1	7	1	7	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.00	0	3	0	3	n	0.21	3	11	3	11	y	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	ENSMUSG00000030177.15	Ccdc77	chr6	protein_coding	coiled-coil domain containing 77
known_NIR_15306	chr6	120351948	120359878	+	120351948;120358630	120358496;120359878	ES	ENSMUST00000135802.8	known	0.00	0	0.5	0	1;0	n	0.50	3	3.0	3	2;4	n	0.35	4	7.5	4	5;10	y	0.48	5	5.5	5	6;5	y	0.20	2	8.0	2	5;11	y	0.00	0	6.0	0	8;4	n	0.11	1	8.0	1	7;9	n	0.30	3	7.0	3	5;9	y	0.15	1	5.5	1	8;3	n	0.20	1	4.0	1	3;5	n	0.22	1	3.5	1	3;4	n	0.27	3	8.0	3	9;7	y	ENSMUSG00000030180.16	Kdm5a	chr6	protein_coding	lysine (K)-specific demethylase 5A
known_NIR_15307	chr6	120376043	120379467	+	120376018	120379467	A5SS	ENSMUST00000135802.8	known	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.06	1	17	1	17	n	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.08	2	22	2	22	y	0.09	1	10	1	10	n	0.25	5	15	5	15	y	0.25	3	9	3	9	y	0.11	2	16	2	16	y	ENSMUSG00000030180.16	Kdm5a	chr6	protein_coding	lysine (K)-specific demethylase 5A
known_NIR_15308	chr6	120383686;120385320	120385206;120389116	+	120383686	120389116	cassetteExon	ENSMUST00000135802.8	known	1.00	12.0	0	12;12	0	n	1.00	6.5	0	5;8	0	n	1.00	26.0	0	27;25	0	n	1.00	16.0	0	16;16	0	n	0.92	22.5	2	24;21	2	y	1.00	12.0	0	13;11	0	n	1.00	16.5	0	17;16	0	n	0.94	15.0	1	15;15	1	n	0.80	8.0	2	11;5	2	y	1.00	16.0	0	12;20	0	n	1.00	4.0	0	3;5	0	n	0.88	14.5	2	14;15	2	y	ENSMUSG00000030180.16	Kdm5a	chr6	protein_coding	lysine (K)-specific demethylase 5A
known_NIR_15309	chr6	120409184;120415486	120415405;120415948	+	120409184	120415948	cassetteExon	ENSMUST00000005108.10	known	0.67	10.0	5	12;8	5	y	0.36	4.0	7	3;5	7	y	0.63	17.0	10	16;18	10	y	0.67	16.5	8	16;17	8	y	0.53	10.0	9	13;7	9	y	0.39	11.5	18	10;13	18	y	0.51	11.5	11	13;10	11	y	0.55	12.0	10	11;13	10	y	0.48	11.0	12	13;9	12	y	0.36	10.0	18	12;8	18	y	0.35	8.0	15	9;7	15	y	0.34	13.5	26	15;12	26	y	ENSMUSG00000030180.16	Kdm5a	chr6	protein_coding	lysine (K)-specific demethylase 5A
known_NIR_15310	chr6	12047153	12047826	+	12007105	12047826	A5SS	ENSMUST00000115511.9	known	0.00	0	60	0	60	n	0.00	0	54	0	54	n	0.00	0	57	0	57	n	0.04	2	54	2	54	y	0.00	0	71	0	71	n	0.00	0	31	0	31	n	0.01	1	74	1	74	n	0.00	0	29	0	29	n	0.00	0	39	0	39	n	0.00	0	67	0	67	n	0.01	1	80	1	80	n	0.00	0	61	0	61	n	ENSMUSG00000029629.18	Phf14	chr6	protein_coding	PHD finger protein 14
known_NIR_15311	chr6	120500570	120507934	-	120500570	120508128	A5SS	ENSMUST00000075303.7	known	0.00	0	19	0	19	n	0.00	0	29	0	29	n	0.00	0	26	0	26	n	0.00	0	40	0	40	n	0.07	2	27	2	27	y	0.00	0	25	0	25	n	0.00	0	36	0	36	n	0.00	0	24	0	24	n	0.00	0	38	0	38	n	0.04	2	46	2	46	y	0.00	0	39	0	39	n	0.00	0	41	0	41	n	ENSMUSG00000058979.8	Hdhd5	chr6	protein_coding	haloacid dehalogenase like hydrolase domain containing 5
known_NIR_15312	chr6	120697923	120701337	+	120697923	120708221	A3SS	ENSMUST00000112686.8	known	0.00	0	4	0	4	n	0.50	3	3	3	3	n	0.27	4	11	4	11	y	0.00	0	12	0	12	n	0.14	2	12	2	12	y	0.09	1	10	1	10	n	0.00	0	12	0	12	n	0.07	1	13	1	13	n	0.00	0	8	0	8	n	0.13	2	13	2	13	y	0.00	0	15	0	15	n	0.14	2	12	2	12	y	ENSMUSG00000071226.12	Cecr2	chr6	protein_coding	CECR2, histone acetyl-lysine reader
known_NIR_15313	chr6	120715286	120727813	+	120715286;120720827	120720744;120727813	ES	ENSMUST00000112686.8	known	0.50	2	2.0	2	3;1	n	0.50	2	2.0	2	1;3	n	0.00	0	4.0	0	2;6	n	0.47	8	9.0	8	8;10	y	0.32	5	10.5	5	8;13	y	0.57	2	1.5	2	1;2	n	0.22	2	7.0	2	5;9	y	0.82	7	1.5	7	1;2	n	0.40	2	3.0	2	4;2	n	0.31	4	9.0	4	10;8	y	0.00	0	2.0	0	1;3	n	0.46	6	7.0	6	8;6	y	ENSMUSG00000071226.12	Cecr2	chr6	protein_coding	CECR2, histone acetyl-lysine reader
known_NIR_15314	chr6	120733898	120734527	+	120733814	120734527	A5SS	ENSMUST00000112686.8	known	0.22	2	7	2	7	n	0.29	2	5	2	5	n	0.17	1	5	1	5	n	0.53	10	9	10	9	y	0.24	4	13	4	13	y	0.00	0	5	0	5	n	0.36	4	7	4	7	y	0.43	3	4	3	4	n	0.40	4	6	4	6	y	0.33	4	8	4	8	y	0.50	3	3	3	3	n	0.53	8	7	8	7	y	ENSMUSG00000071226.12	Cecr2	chr6	protein_coding	CECR2, histone acetyl-lysine reader
known_NIR_15315	chr6	120735592	120738105	+	120735592	120738102	A3SS	ENSMUST00000112686.8	known	0.41	7	10	7	10	y	0.53	8	7	8	7	y	0.43	6	8	6	8	y	0.50	10	10	10	10	y	0.34	10	19	10	19	y	0.55	12	10	12	10	y	0.65	15	8	15	8	y	0.62	5	3	5	3	n	0.33	7	14	7	14	y	0.56	10	8	10	8	y	0.47	7	8	7	8	y	0.33	7	14	7	14	y	ENSMUSG00000071226.12	Cecr2	chr6	protein_coding	CECR2, histone acetyl-lysine reader
known_NIR_15316	chr6	120785432	120799549	-	120785432	120795295	5pMXE	ENSMUST00000203783.3	known	0.00	0	355	0	355	n	0.00	0	297	0	297	n	0.00	0	494	0	494	n	0.00	0	390	0	390	n	0.00	0	444	0	444	n	0.00	0	238	0	238	n	0.00	0	440	0	440	n	0.01	2	219	2	219	y	0.00	0	307	0	307	n	0.00	0	409	0	409	n	0.00	0	322	0	322	n	0.00	0	517	0	517	n	ENSMUSG00000019210.11	Atp6v1e1	chr6	protein_coding	ATPase, H+ transporting, lysosomal V1 subunit E1
known_NIR_15317	chr6	120785432	120799549	-	120785432;120795360	120795295;120799549	ES	ENSMUST00000019354.11	known	0.00	0	359.0	0	355;363	n	0.00	0	294.0	0	297;291	n	0.00	0	489.5	0	494;485	n	0.00	0	406.0	0	390;422	n	0.00	0	449.5	0	444;455	n	0.00	0	239.0	0	238;240	n	0.00	0	450.5	0	440;461	n	0.01	2	227.5	2	219;236	y	0.00	0	316.0	0	307;325	n	0.00	0	430.5	0	409;452	n	0.00	0	319.0	0	322;316	n	0.00	0	503.0	0	517;489	n	ENSMUSG00000019210.11	Atp6v1e1	chr6	protein_coding	ATPase, H+ transporting, lysosomal V1 subunit E1
known_NIR_15318	chr6	120795360	120799228	-	120795360	120799549	A5SS	ENSMUST00000019354.11	known	0.00	0	363	0	363	n	0.00	0	291	0	291	n	0.00	0	485	0	485	n	0.00	0	422	0	422	n	0.00	0	455	0	455	n	0.00	0	240	0	240	n	0.00	0	461	0	461	n	0.01	2	236	2	236	y	0.00	0	325	0	325	n	0.00	0	452	0	452	n	0.00	1	316	1	316	n	0.00	0	489	0	489	n	ENSMUSG00000019210.11	Atp6v1e1	chr6	protein_coding	ATPase, H+ transporting, lysosomal V1 subunit E1
known_NIR_15319	chr6	120825577;120839923	120839816;120842529	+	120825577	120842529	cassetteExon	ENSMUST00000203584.3	known	1.00	29.5	0	26;33	0	n	0.89	16.5	2	16;17	2	y	0.97	35.5	1	22;49	1	n	1.00	37.5	0	41;34	0	n	1.00	52.0	0	46;58	0	n	1.00	20.5	0	12;29	0	n	1.00	48.0	0	48;48	0	n	1.00	46.5	0	41;52	0	n	1.00	25.5	0	21;30	0	n	1.00	51.0	0	42;60	0	n	1.00	23.0	0	18;28	0	n	1.00	35.0	0	33;37	0	n	ENSMUSG00000009112.5	Bcl2l13	chr6	protein_coding	BCL2-like 13 (apoptosis facilitator)
known_NIR_15320	chr6	120878749	120883390	-	120878749	120893695	A5SS	ENSMUST00000160684.8	known	0.05	2	39	2	39	y	0.08	2	22	2	22	y	0.05	1	19	1	19	n	0.00	0	20	0	20	n	0.00	0	37	0	37	n	0.00	0	15	0	15	n	0.06	1	15	1	15	n	0.00	0	16	0	16	n	0.00	0	17	0	17	n	0.04	2	47	2	47	y	0.03	1	30	1	30	n	0.00	0	39	0	39	n	ENSMUSG00000004446.13	Bid	chr6	protein_coding	BH3 interacting domain death agonist
known_NIR_15321	chr6	120928144	120928262	-	120912234	120928262	A3SS	ENSMUST00000098457.9	known	0.20	2	8	2	8	y	0.09	2	21	2	21	y	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.12	1	7	1	7	n	0.00	0	16	0	16	n	0.22	2	7	2	7	n	0.00	0	5	0	5	n	0.00	0	23	0	23	n	0.06	1	16	1	16	n	0.00	0	12	0	12	n	ENSMUSG00000051586.18	Mical3	chr6	protein_coding	microtubule associated monooxygenase, calponin and LIM domain containing 3
known_NIR_15322	chr6	120929446;120930645	120930595;120934660	-	120929446	120934660	cassetteExon	ENSMUST00000098457.9	known	0.09	1.0	10	2;0	10	n	0.00	0.0	11	0;0	11	n	0.12	2.0	15	2;2	15	y	0.07	1.0	14	2;0	14	n	0.00	0.0	12	0;0	12	n	0.20	0.5	2	1;0	2	n	0.16	3.5	18	3;4	18	y	0.00	0.0	5	0;0	5	n	0.00	0.0	10	0;0	10	n	0.00	0.0	15	0;0	15	n	0.00	0.0	12	0;0	12	n	0.00	0.0	11	0;0	11	n	ENSMUSG00000051586.18	Mical3	chr6	protein_coding	microtubule associated monooxygenase, calponin and LIM domain containing 3
known_NIR_15323	chr6	120984390	120985956	-	120979836	120985956	A3SS	ENSMUST00000207889.2	known	0.29	4	10	4	10	y	0.14	2	12	2	12	y	0.42	8	11	8	11	y	0.07	1	13	1	13	n	0.06	1	16	1	16	n	0.20	2	8	2	8	y	0.36	4	7	4	7	y	0.00	0	11	0	11	n	0.33	2	4	2	4	n	0.35	6	11	6	11	y	0.43	6	8	6	8	y	0.12	2	14	2	14	y	ENSMUSG00000051586.18	Mical3	chr6	protein_coding	microtubule associated monooxygenase, calponin and LIM domain containing 3
known_NIR_15324	chr6	120986142	120986738	-	120986142	120998144	A5SS	ENSMUST00000207889.2	known	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	22	0	22	n	0.00	0	17	0	17	n	0.00	0	25	0	25	n	-	-	-	-	-	-	0.24	4	13	4	13	y	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	ENSMUSG00000051586.18	Mical3	chr6	protein_coding	microtubule associated monooxygenase, calponin and LIM domain containing 3
known_NIR_15325	chr6	121162809	121167060	+	121162809	121164218	3pMXE	ENSMUST00000137432.8	known	0.05	1	21	1	21	n	0.05	1	21	1	21	n	0.00	0	25	0	25	n	0.00	0	53	0	53	n	0.05	2	38	2	38	y	0.00	0	6	0	6	n	0.00	0	47	0	47	n	0.00	0	15	0	15	n	0.07	2	25	2	25	y	0.07	4	57	4	57	y	0.03	1	28	1	28	n	0.00	0	58	0	58	n	ENSMUSG00000067825.12	Pex26	chr6	protein_coding	peroxisomal biogenesis factor 26
known_NIR_15326	chr6	121162809;121164525	121164218;121167060	+	121162809	121167060	cassetteExon	ENSMUST00000118234.8	known	0.97	30.0	1	21;39	1	n	0.96	21.5	1	21;22	1	n	1.00	23.5	0	25;22	0	n	1.00	48.5	0	53;44	0	n	0.95	35.5	2	38;33	2	y	1.00	9.5	0	6;13	0	n	1.00	53.5	0	47;60	0	n	1.00	15.0	0	15;15	0	n	0.93	25.0	2	25;25	2	y	0.94	60.0	4	57;63	4	y	0.97	29.0	1	28;30	1	n	1.00	70.0	0	58;82	0	n	ENSMUSG00000067825.12	Pex26	chr6	protein_coding	peroxisomal biogenesis factor 26
known_NIR_15327	chr6	121167206	121170474	+	121167206	121170471	A3SS	ENSMUST00000118234.8	known	0.25	16	49	16	49	y	0.17	6	29	6	29	y	0.09	3	32	3	32	y	0.15	14	79	14	79	y	0.16	11	57	11	57	y	0.24	4	13	4	13	y	0.17	11	53	11	53	y	0.12	3	21	3	21	y	0.21	10	38	10	38	y	0.21	19	71	19	71	y	0.21	9	34	9	34	y	0.14	15	92	15	92	y	ENSMUSG00000067825.12	Pex26	chr6	protein_coding	peroxisomal biogenesis factor 26
known_NIR_15328	chr6	121277872	121279656	+	121277288	121279656	A5SS	ENSMUST00000064580.14	known	0.08	14	172	14	172	y	0.17	25	118	25	118	y	0.15	18	103	18	103	y	0.09	20	206	20	206	y	0.16	53	282	53	282	y	0.11	9	70	9	70	y	0.16	41	223	41	223	y	0.15	24	134	24	134	y	0.12	22	156	22	156	y	0.12	32	236	32	236	y	0.13	29	200	29	200	y	0.06	15	220	15	220	y	ENSMUSG00000030108.15	Slc6a13	chr6	protein_coding	solute carrier family 6 (neurotransmitter transporter, GABA), member 13
known_NIR_15329	chr6	121334011	121335981	+	121334011;121335663	121335560;121335981	ES	ENSMUST00000166457.8	known	0.02	2	127.5	2	120;135	y	0.00	0	110.5	0	99;122	n	0.00	0	103.5	0	112;95	n	0.02	4	162.0	4	180;144	y	0.00	0	253.0	0	258;248	n	0.00	0	94.5	0	98;91	n	0.01	1	152.0	1	135;169	n	0.00	0	94.5	0	98;91	n	0.03	4	125.5	4	135;116	y	0.00	0	170.5	0	176;165	n	0.01	1	154.0	1	147;161	n	0.00	0	174.5	0	162;187	n	ENSMUSG00000030109.16	Slc6a12	chr6	protein_coding	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12
known_NIR_15330	chr6	122221221	122222268	+	122221221	122222235	A3SS	ENSMUST00000186891.7	known	1.00	109	0	109	0	n	1.00	72	0	72	0	n	1.00	115	0	115	0	n	0.97	105	3	105	3	y	1.00	111	0	111	0	n	1.00	61	0	61	0	n	0.97	115	3	115	3	y	1.00	118	0	118	0	n	1.00	76	0	76	0	n	1.00	100	0	100	0	n	0.98	91	2	91	2	y	1.00	122	0	122	0	n	ENSMUSG00000101397.7	Mug-ps1	chr6	transcribed_unprocessed_pseudogene	murinoglobulin, pseudogene 1
known_NIR_15331	chr6	122286125;122288586	122288563;122289193	+	122286125	122289193	cassetteExon	ENSMUST00000007602.15	known	0.00	0.5	173	0;1	173	n	0.00	0.0	128	0;0	128	n	0.01	2.0	240	2;2	240	y	0.00	0.0	202	0;0	202	n	0.00	1.0	224	1;1	224	n	0.00	0.0	161	0;0	161	n	0.00	0.5	181	0;1	181	n	0.00	0.0	128	0;0	128	n	0.00	0.0	175	0;0	175	n	0.01	1.5	245	1;2	245	n	0.01	1.0	158	1;1	158	n	0.00	1.0	213	1;1	213	n	ENSMUSG00000007458.15	M6pr	chr6	protein_coding	mannose-6-phosphate receptor, cation dependent
known_NIR_15332	chr6	122558709	122568046	-	122558709;122565131	122565104;122568046	ES	ENSMUST00000112586.8	known	0.09	2	20.0	2	14;26	y	0.04	1	24.0	1	9;39	n	0.01	1	100.0	1	42;158	n	0.00	0	36.0	0	15;57	n	0.03	2	61.5	2	31;92	y	0.00	0	35.0	0	12;58	n	0.03	1	38.5	1	19;58	n	0.04	1	27.5	1	13;42	n	0.00	0	33.0	0	17;49	n	0.18	8	35.5	8	13;58	y	0.00	0	44.5	0	21;68	n	0.02	1	47.0	1	29;65	n	ENSMUSG00000040613.15	Apobec1	chr6	protein_coding	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1
known_NIR_15333	chr6	122558709	122568046	-	122565131	122568046	3pMXE	ENSMUST00000143356.2	known	0.07	2	26	2	26	y	0.03	1	39	1	39	n	0.01	1	158	1	158	n	0.00	0	57	0	57	n	0.02	2	92	2	92	y	0.00	0	58	0	58	n	0.02	1	58	1	58	n	0.02	1	42	1	42	n	0.00	0	49	0	49	n	0.12	8	58	8	58	y	0.00	0	68	0	68	n	0.02	1	65	1	65	n	ENSMUSG00000040613.15	Apobec1	chr6	protein_coding	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1
known_NIR_15334	chr6	122564312	122565104	-	122558709	122565104	A3SS	ENSMUST00000112586.8	known	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.46	36	42	36	42	y	0.00	0	15	0	15	n	0.09	3	31	3	31	y	0.33	6	12	6	12	y	0.21	5	19	5	19	y	0.24	4	13	4	13	y	0.19	4	17	4	17	y	0.13	2	13	2	13	y	0.22	6	21	6	21	y	0.17	6	29	6	29	y	ENSMUSG00000040613.15	Apobec1	chr6	protein_coding	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1
known_NIR_15335	chr6	122568163	122573591	-	122568219	122573591	A3SS	ENSMUST00000112586.8	known	1.00	24	0	24	0	n	1.00	32	0	32	0	n	0.99	191	1	191	1	n	0.93	41	3	41	3	y	0.94	97	6	97	6	y	0.98	60	1	60	1	n	1.00	58	0	58	0	n	0.97	64	2	64	2	y	0.95	38	2	38	2	y	0.96	73	3	73	3	y	0.98	63	1	63	1	n	0.96	79	3	79	3	y	ENSMUSG00000040613.15	Apobec1	chr6	protein_coding	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1
known_NIR_15336	chr6	122568163	122577017	-	122568163;122573736	122573591;122577017	ES	ENSMUST00000112585.8	known	0.00	0	27.5	0	24;31	n	0.00	0	30.0	0	32;28	n	0.01	2	188.5	2	191;186	y	0.00	0	52.5	0	41;64	n	0.00	0	101.0	0	97;105	n	0.04	3	70.5	3	60;81	y	0.00	0	63.5	0	58;69	n	0.06	4	66.0	4	64;68	y	0.00	0	47.5	0	38;57	n	0.01	1	69.5	1	73;66	n	0.03	2	67.5	2	63;72	y	0.00	0	82.5	0	79;86	n	ENSMUSG00000040613.15	Apobec1	chr6	protein_coding	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1
known_NIR_15337	chr6	122568163	122577017	-	122573736	122577017	A3SS&ES	ENSMUST00000112586.8	known	0.00	0	31	0	31	n	0.00	0	28	0	28	n	0.01	2	186	2	186	y	0.00	0	64	0	64	n	0.00	0	105	0	105	n	0.04	3	81	3	81	y	0.00	0	69	0	69	n	0.06	4	68	4	68	y	0.00	0	57	0	57	n	0.01	1	66	1	66	n	0.03	2	72	2	72	y	0.00	0	86	0	86	n	ENSMUSG00000040613.15	Apobec1	chr6	protein_coding	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1
known_NIR_15338	chr6	122577084	122577198	-	122577084	122579216	A5SS	ENSMUST00000112586.8	known	0.00	0	11	0	11	n	0.00	0	19	0	19	n	0.19	21	89	21	89	y	0.00	0	34	0	34	n	0.00	0	57	0	57	n	0.10	5	47	5	47	y	0.02	1	41	1	41	n	0.07	3	39	3	39	y	0.05	2	41	2	41	y	0.04	2	51	2	51	y	0.00	0	48	0	48	n	0.04	2	43	2	43	y	ENSMUSG00000040613.15	Apobec1	chr6	protein_coding	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1
known_NIR_15339	chr6	122851622	122852483	+	122851622	122857372	A3SS	ENSMUST00000032477.6	known	0.00	0	71	0	71	n	0.02	1	51	1	51	n	0.02	2	126	2	126	y	0.00	0	100	0	100	n	0.01	2	141	2	141	y	0.00	0	73	0	73	n	0.00	0	80	0	80	n	0.00	0	79	0	79	n	0.00	0	46	0	46	n	0.00	0	84	0	84	n	0.00	0	73	0	73	n	0.00	0	71	0	71	n	ENSMUSG00000030327.9	Necap1	chr6	protein_coding	NECAP endocytosis associated 1
known_NIR_15340	chr6	123207552	123212403	+	123207552	123209052	A3SS&ES	ENSMUST00000205129.2	known	0.44	4	5	4	5	n	0.00	0	3	0	3	n	0.45	5	6	5	6	y	0.33	3	6	3	6	n	0.23	3	10	3	10	y	0.25	2	6	2	6	n	0.33	4	8	4	8	y	0.14	1	6	1	6	n	0.20	1	4	1	4	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.50	2	2	2	2	n	ENSMUSG00000023349.15	Clec4n	chr6	protein_coding	C-type lectin domain family 4, member n
known_NIR_15341	chr6	123207552;123209153	123209052;123212403	+	123207552	123212403	cassetteExon	ENSMUST00000112554.9	known	0.56	5.0	4	5;5	4	y	1.00	6.0	0	3;9	0	n	0.62	8.0	5	6;10	5	y	0.62	5.0	3	6;4	3	y	0.73	8.0	3	10;6	3	y	0.78	7.0	2	6;8	2	y	0.65	7.5	4	8;7	4	y	0.85	5.5	1	6;5	1	n	0.80	4.0	1	4;4	1	n	1.00	2.5	0	5;0	0	n	1.00	4.0	0	5;3	0	n	0.73	5.5	2	2;9	2	y	ENSMUSG00000023349.15	Clec4n	chr6	protein_coding	C-type lectin domain family 4, member n
known_NIR_15342	chr6	124304946	124305921	+	124304946	124306004	A3SS	ENSMUST00000032234.5	known	0.18	5	23	5	23	y	0.15	2	11	2	11	y	0.35	8	15	8	15	y	0.25	3	9	3	9	y	0.14	6	37	6	37	y	0.25	3	9	3	9	y	0.11	4	34	4	34	y	0.27	4	11	4	11	y	0.50	6	6	6	6	y	0.20	2	8	2	8	y	0.17	1	5	1	5	n	0.00	0	3	0	3	n	ENSMUSG00000008845.10	Cd163	chr6	protein_coding	CD163 antigen
known_NIR_15343	chr6	124380866	124381589	-	124380866;124381181	124381092;124381589	ES	ENSMUST00000112530.8	known	0.87	149	23.0	149	46;0	n	0.87	96	14.5	96	29;0	n	0.92	145	12.5	145	25;0	n	0.88	172	24.5	172	46;3	y	0.89	179	23.0	179	46;0	n	0.87	86	12.5	86	25;0	n	0.90	157	16.5	157	33;0	n	0.89	92	11.0	92	22;0	n	0.92	143	12.5	143	25;0	n	0.86	209	33.5	209	67;0	n	0.87	140	20.5	140	41;0	n	0.91	183	18.0	183	36;0	n	ENSMUSG00000005069.13	Pex5	chr6	protein_coding	peroxisomal biogenesis factor 5
known_NIR_15344	chr6	124380866	124381589	-	124380866;124381202	124381092;124381589	ES	ENSMUST00000112532.8	known	0.77	149	43.5	149	46;41	y	0.78	96	27.0	96	29;25	y	0.83	145	29.0	145	25;33	y	0.78	172	49.0	172	46;52	y	0.78	179	50.0	179	46;54	y	0.76	86	26.5	86	25;28	y	0.80	157	39.5	157	33;46	y	0.79	92	25.0	92	22;28	y	0.84	143	27.5	143	25;30	y	0.76	209	66.0	209	67;65	y	0.78	140	40.0	140	41;39	y	0.82	183	40.5	183	36;45	y	ENSMUSG00000005069.13	Pex5	chr6	protein_coding	peroxisomal biogenesis factor 5
known_NIR_15345	chr6	124381181	124381589	-	124381202	124381589	A3SS	ENSMUST00000112532.8	known	0.00	0	41	0	41	n	0.00	0	25	0	25	n	0.00	0	33	0	33	n	0.05	3	52	3	52	y	0.00	0	54	0	54	n	0.00	0	28	0	28	n	0.00	0	46	0	46	n	0.00	0	28	0	28	n	0.00	0	30	0	30	n	0.00	0	65	0	65	n	0.00	0	39	0	39	n	0.00	0	45	0	45	n	ENSMUSG00000005069.13	Pex5	chr6	protein_coding	peroxisomal biogenesis factor 5
known_NIR_15346	chr6	124390749	124390966	-	124390660	124390966	A3SS	ENSMUST00000112532.8	known	0.00	0	166	0	166	n	0.02	2	129	2	129	y	0.00	0	145	0	145	n	0.01	4	266	4	266	y	0.01	4	268	4	268	y	0.00	0	117	0	117	n	0.00	0	202	0	202	n	0.00	0	140	0	140	n	0.03	5	142	5	142	y	0.01	2	235	2	235	y	0.00	0	176	0	176	n	0.02	3	195	3	195	y	ENSMUSG00000005069.13	Pex5	chr6	protein_coding	peroxisomal biogenesis factor 5
known_NIR_15347	chr6	124391409	124391932	-	124391409	124391726	5pMXE	ENSMUST00000112531.8	known	1.00	108	0	108	0	n	1.00	73	0	73	0	n	0.99	99	1	99	1	n	1.00	146	0	146	0	n	0.99	142	2	142	2	y	1.00	71	0	71	0	n	0.98	144	3	144	3	y	0.98	84	2	84	2	y	1.00	79	0	79	0	n	0.99	158	2	158	2	y	1.00	109	0	109	0	n	0.97	126	4	126	4	y	ENSMUSG00000005069.13	Pex5	chr6	protein_coding	peroxisomal biogenesis factor 5
known_NIR_15348	chr6	124409119	124409646	-	124409119	124413777	A5SS	ENSMUST00000112523.8	known	0.44	7	9	7	9	y	0.60	6	4	6	4	y	0.00	0	2	0	2	n	0.72	21	8	21	8	y	0.53	9	8	9	8	y	0.57	4	3	4	3	n	0.58	14	10	14	10	y	0.67	2	1	2	1	n	0.57	12	9	12	9	y	0.80	37	9	37	9	y	0.68	21	10	21	10	y	0.23	3	10	3	10	y	ENSMUSG00000008153.13	Clstn3	chr6	protein_coding	calsyntenin 3
known_NIR_15349	chr6	124409119	124410367	-	124409119	124409646	A5SS	ENSMUST00000238807.2	known	0.00	0	7	0	7	n	0.25	2	6	2	6	n	1.00	1	0	1	0	n	0.09	2	21	2	21	y	0.00	0	9	0	9	n	0.20	1	4	1	4	n	0.22	4	14	4	14	y	0.33	1	2	1	2	n	0.14	2	12	2	12	y	0.40	25	37	25	37	y	0.22	6	21	6	21	y	0.25	1	3	1	3	n	ENSMUSG00000008153.13	Clstn3	chr6	protein_coding	calsyntenin 3
known_NIR_15350	chr6	124409119	124410367	-	124409119	124413777	A5SS	ENSMUST00000112523.8	known	0.00	0	9	0	9	n	0.33	2	4	2	4	n	0.33	1	2	1	2	n	0.20	2	8	2	8	y	0.00	0	8	0	8	n	0.25	1	3	1	3	n	0.29	4	10	4	10	y	0.50	1	1	1	1	n	0.18	2	9	2	9	y	0.74	25	9	25	9	y	0.38	6	10	6	10	y	0.09	1	10	1	10	n	ENSMUSG00000008153.13	Clstn3	chr6	protein_coding	calsyntenin 3
known_NIR_15351	chr6	124409119	124410367	-	124409119;124409884	124409646;124410367	ES	ENSMUST00000239139.2	known	0.00	0	5.0	0	7;3	n	0.40	2	3.0	2	6;0	n	1.00	1	0.0	1	0;0	n	0.16	2	10.5	2	21;0	n	0.00	0	4.5	0	9;0	n	0.33	1	2.0	1	4;0	n	0.36	4	7.0	4	14;0	n	0.50	1	1.0	1	2;0	n	0.25	2	6.0	2	12;0	n	0.56	25	20.0	25	37;3	y	0.36	6	10.5	6	21;0	n	0.40	1	1.5	1	3;0	n	ENSMUSG00000008153.13	Clstn3	chr6	protein_coding	calsyntenin 3
known_NIR_15352	chr6	124518447	124519147	-	124518447	124519152	A5SS	ENSMUST00000160505.8	known	0.26	41	115	41	115	y	0.33	46	93	46	93	y	0.23	28	96	28	96	y	0.28	67	173	67	173	y	0.32	96	207	96	207	y	0.27	33	90	33	90	y	0.37	84	145	84	145	y	0.29	54	132	54	132	y	0.30	45	103	45	103	y	0.32	78	169	78	169	y	0.30	36	86	36	86	y	0.26	46	131	46	131	y	ENSMUSG00000038521.18	C1s1	chr6	protein_coding	complement component 1, s subcomponent 1
known_NIR_15353	chr6	124518447	124519147	-	124518447	124519157	A5SS	ENSMUST00000159463.8	known	0.66	41	21	41	21	y	0.77	46	14	46	14	y	0.56	28	22	28	22	y	0.83	67	14	67	14	y	0.76	96	30	96	30	y	0.72	33	13	33	13	y	0.76	84	26	84	26	y	0.73	54	20	54	20	y	0.82	45	10	45	10	y	0.80	78	19	78	19	y	0.68	36	17	36	17	y	0.79	46	12	46	12	y	ENSMUSG00000038521.18	C1s1	chr6	protein_coding	complement component 1, s subcomponent 1
known_NIR_15354	chr6	124518447	124519147	-	124518447	124519227	A5SS	ENSMUST00000162443.8	known	0.15	41	231	41	231	y	0.25	46	136	46	136	y	0.15	28	161	28	161	y	0.17	67	339	67	339	y	0.21	96	362	96	362	y	0.22	33	115	33	115	y	0.26	84	239	84	239	y	0.18	54	238	54	238	y	0.16	45	234	45	234	y	0.20	78	322	78	322	y	0.19	36	158	36	158	y	0.14	46	277	46	277	y	ENSMUSG00000038521.18	C1s1	chr6	protein_coding	complement component 1, s subcomponent 1
known_NIR_15355	chr6	124518447	124519157	-	124518447	124519152	A5SS	ENSMUST00000160505.8	known	0.15	21	115	21	115	y	0.13	14	93	14	93	y	0.19	22	96	22	96	y	0.07	14	173	14	173	y	0.13	30	207	30	207	y	0.13	13	90	13	90	y	0.15	26	145	26	145	y	0.13	20	132	20	132	y	0.09	10	103	10	103	y	0.10	19	169	19	169	y	0.17	17	86	17	86	y	0.08	12	131	12	131	y	ENSMUSG00000038521.18	C1s1	chr6	protein_coding	complement component 1, s subcomponent 1
known_NIR_15356	chr6	124518447	124519157	-	124518447	124519227	A5SS	ENSMUST00000162443.8	known	0.08	21	231	21	231	y	0.09	14	136	14	136	y	0.12	22	161	22	161	y	0.04	14	339	14	339	y	0.08	30	362	30	362	y	0.10	13	115	13	115	y	0.10	26	239	26	239	y	0.08	20	238	20	238	y	0.04	10	234	10	234	y	0.06	19	322	19	322	y	0.10	17	158	17	158	y	0.04	12	277	12	277	y	ENSMUSG00000038521.18	C1s1	chr6	protein_coding	complement component 1, s subcomponent 1
known_NIR_15357	chr6	124518447	124519227	-	124518447	124519152	A5SS	ENSMUST00000160505.8	known	0.67	231	115	231	115	y	0.59	136	93	136	93	y	0.63	161	96	161	96	y	0.66	339	173	339	173	y	0.64	362	207	362	207	y	0.56	115	90	115	90	y	0.62	239	145	239	145	y	0.64	238	132	238	132	y	0.69	234	103	234	103	y	0.66	322	169	322	169	y	0.65	158	86	158	86	y	0.68	277	131	277	131	y	ENSMUSG00000038521.18	C1s1	chr6	protein_coding	complement component 1, s subcomponent 1
known_NIR_15358	chr6	124675140	124676970	+	124675140	124676202	3pMXE	ENSMUST00000141069.8	known	0.02	3	121	3	121	y	0.01	1	89	1	89	n	0.01	1	139	1	139	n	0.02	5	202	5	202	y	0.01	2	253	2	253	y	0.01	1	121	1	121	n	0.01	2	201	2	201	y	0.02	2	123	2	123	y	0.02	3	150	3	150	y	0.02	7	293	7	293	y	0.02	3	164	3	164	y	0.03	8	265	8	265	y	ENSMUSG00000004270.14	Lpcat3	chr6	protein_coding	lysophosphatidylcholine acyltransferase 3
known_NIR_15359	chr6	124675140	124676970	+	124675140;124676308	124676202;124676970	ES	ENSMUST00000135516.8	known	0.03	3	112.0	3	121;103	y	0.01	1	100.5	1	89;112	n	0.01	1	148.5	1	139;158	n	0.03	5	179.5	5	202;157	y	0.01	2	242.0	2	253;231	y	0.01	1	106.5	1	121;92	n	0.01	2	194.5	2	201;188	y	0.02	2	117.0	2	123;111	y	0.02	3	145.5	3	150;141	y	0.02	7	289.5	7	293;286	y	0.02	3	167.5	3	164;171	y	0.03	8	263.5	8	265;262	y	ENSMUSG00000004270.14	Lpcat3	chr6	protein_coding	lysophosphatidylcholine acyltransferase 3
known_NIR_15360	chr6	124679541	124679722	+	124679541	124679969	A3SS	ENSMUST00000135516.8	known	0.00	0	207	0	207	n	0.00	0	198	0	198	n	0.00	0	257	0	257	n	0.01	3	224	3	224	y	0.00	0	304	0	304	n	0.02	4	172	4	172	y	0.00	0	309	0	309	n	0.00	0	161	0	161	n	0.01	3	224	3	224	y	0.00	0	451	0	451	n	0.01	4	327	4	327	y	0.01	3	394	3	394	y	ENSMUSG00000004270.14	Lpcat3	chr6	protein_coding	lysophosphatidylcholine acyltransferase 3
known_NIR_15361	chr6	124682619	124688839	-	124682619;124682805	124682704;124688839	ES	ENSMUST00000004379.8	known	0.00	1	229.5	1	231;228	n	0.00	0	209.5	0	217;202	n	0.00	0	200.5	0	231;170	n	0.01	1	191.0	1	176;206	n	0.00	0	296.5	0	304;289	n	0.00	0	127.5	0	120;135	n	0.00	0	252.0	0	268;236	n	0.01	1	127.5	1	150;105	n	0.00	1	210.0	1	224;196	n	0.01	2	299.5	2	320;279	y	0.00	1	215.5	1	242;189	n	0.00	0	267.0	0	271;263	n	ENSMUSG00000004268.12	Emg1	chr6	protein_coding	EMG1 N1-specific pseudouridine methyltransferase
known_NIR_15362	chr6	124691131	124692049	+	124691131	124691793	A3SS&ES	ENSMUST00000004375.16	known	0.01	6	689	6	689	y	0.00	0	721	0	721	n	0.00	0	589	0	589	n	0.00	0	757	0	757	n	0.01	10	763	10	763	y	0.00	0	308	0	308	n	0.01	7	948	7	948	y	0.00	0	341	0	341	n	0.00	0	612	0	612	n	0.00	0	1128	0	1128	n	0.00	0	878	0	878	n	0.01	10	872	10	872	y	ENSMUSG00000004264.18	Phb2	chr6	protein_coding	prohibitin 2
known_NIR_15363	chr6	124709823	124715462	-	124709823	124709909	5pMXE	ENSMUST00000112484.10	known	0.83	19	4	19	4	y	0.88	22	3	22	3	y	0.78	28	8	28	8	y	0.85	28	5	28	5	y	0.71	27	11	27	11	y	0.84	27	5	27	5	y	0.82	33	7	33	7	y	1.00	24	0	24	0	n	0.71	17	7	17	7	y	0.94	44	3	44	3	y	1.00	15	0	15	0	n	0.82	37	8	37	8	y	ENSMUSG00000004266.16	Ptpn6	chr6	protein_coding	protein tyrosine phosphatase, non-receptor type 6
known_NIR_15364	chr6	124716376	124717482	-	124716478	124717482	A3SS	ENSMUST00000129823.2	known	1.00	521	0	521	0	n	0.99	520	3	520	3	y	1.00	256	0	256	0	n	0.99	478	4	478	4	y	1.00	572	1	572	1	n	1.00	151	0	151	0	n	0.99	734	7	734	7	y	1.00	231	1	231	1	n	0.99	489	3	489	3	y	1.00	700	3	700	3	y	1.00	692	3	692	3	y	1.00	596	1	596	1	n	ENSMUSG00000072772.4	Grcc10	chr6	protein_coding	gene rich cluster, C10 gene
known_NIR_15365	chr6	124726884	124732947	-	124726884	124733259	A5SS	ENSMUST00000088357.12	known	0.00	0	21	0	21	n	0.00	0	10	0	10	n	0.00	0	21	0	21	n	0.00	0	12	0	12	n	0.08	2	23	2	23	y	0.00	0	15	0	15	n	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	29	0	29	n	0.19	4	17	4	17	y	0.00	0	18	0	18	n	ENSMUSG00000004263.16	Atn1	chr6	protein_coding	atrophin 1
known_NIR_15366	chr6	124785918	124786190	+	124785742	124786190	A5SS	ENSMUST00000047760.10	known	1.00	5	0	5	0	n	1.00	8	0	8	0	n	0.67	4	2	4	2	n	0.45	5	6	5	6	y	0.00	0	7	0	7	n	1.00	2	0	2	0	n	1.00	5	0	5	0	n	1.00	3	0	3	0	n	1.00	3	0	3	0	n	0.29	2	5	2	5	n	0.89	8	1	8	1	n	0.50	4	4	4	4	n	ENSMUSG00000038451.14	Spsb2	chr6	protein_coding	splA/ryanodine receptor domain and SOCS box containing 2
known_NIR_15367	chr6	124785945	124786190	+	124785918	124786190	A5SS	ENSMUST00000143040.8	known	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.33	2	4	2	4	n	0.29	2	5	2	5	n	1.00	2	0	2	0	n	0.50	2	2	2	2	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.67	4	2	4	2	n	0.33	4	8	4	8	y	0.00	0	4	0	4	n	ENSMUSG00000038451.14	Spsb2	chr6	protein_coding	splA/ryanodine receptor domain and SOCS box containing 2
known_NIR_15368	chr6	124785945	124786190	+	124785993	124786190	A5SS	ENSMUST00000052727.5	known	0.00	0	34	0	34	n	0.00	0	15	0	15	n	0.13	2	13	2	13	y	0.07	2	26	2	26	y	0.07	2	26	2	26	y	0.10	2	18	2	18	y	0.00	0	33	0	33	n	0.00	0	23	0	23	n	0.10	1	9	1	9	n	0.12	4	29	4	29	y	0.18	4	18	4	18	y	0.00	0	26	0	26	n	ENSMUSG00000038451.14	Spsb2	chr6	protein_coding	splA/ryanodine receptor domain and SOCS box containing 2
known_NIR_15369	chr6	124785993	124786190	+	124785742	124786190	A5SS	ENSMUST00000047760.10	known	1.00	34	0	34	0	n	1.00	15	0	15	0	n	0.87	13	2	13	2	y	0.81	26	6	26	6	y	0.79	26	7	26	7	y	1.00	18	0	18	0	n	1.00	33	0	33	0	n	1.00	23	0	23	0	n	1.00	9	0	9	0	n	0.85	29	5	29	5	y	0.95	18	1	18	1	n	0.87	26	4	26	4	y	ENSMUSG00000038451.14	Spsb2	chr6	protein_coding	splA/ryanodine receptor domain and SOCS box containing 2
known_NIR_15370	chr6	124785993	124786190	+	124785918	124786190	A5SS	ENSMUST00000143040.8	known	0.87	34	5	34	5	y	0.65	15	8	15	8	y	0.76	13	4	13	4	y	0.84	26	5	26	5	y	1.00	26	0	26	0	n	0.90	18	2	18	2	y	0.87	33	5	33	5	y	0.88	23	3	23	3	y	0.75	9	3	9	3	y	0.94	29	2	29	2	y	0.69	18	8	18	8	y	0.87	26	4	26	4	y	ENSMUSG00000038451.14	Spsb2	chr6	protein_coding	splA/ryanodine receptor domain and SOCS box containing 2
known_NIR_15371	chr6	124794994	124795507	-	124794994	124795438	A5SS	ENSMUST00000047510.10	known	0.94	112	7	112	7	y	0.88	83	11	83	11	y	0.93	136	10	136	10	y	0.92	92	8	92	8	y	0.98	168	3	168	3	y	0.96	73	3	73	3	y	0.95	168	9	168	9	y	1.00	68	0	68	0	n	0.93	85	6	85	6	y	0.96	161	7	161	7	y	0.93	113	9	113	9	y	0.99	127	1	127	1	n	ENSMUSG00000038429.11	Usp5	chr6	protein_coding	ubiquitin specific peptidase 5 (isopeptidase T)
known_NIR_15372	chr6	124799982	124800416	-	124799682	124800416	A3SS	ENSMUST00000047510.10	known	0.05	3	53	3	53	y	0.00	0	48	0	48	n	0.00	0	64	0	64	n	0.00	0	60	0	60	n	0.00	0	72	0	72	n	0.02	1	49	1	49	n	0.01	1	71	1	71	n	0.03	1	37	1	37	n	0.00	0	45	0	45	n	0.02	2	99	2	99	y	0.00	0	78	0	78	n	0.00	0	90	0	90	n	ENSMUSG00000038429.11	Usp5	chr6	protein_coding	ubiquitin specific peptidase 5 (isopeptidase T)
known_NIR_15373	chr6	124801610	124801815	-	124801664	124801815	A3SS	ENSMUST00000047510.10	known	0.00	0	40	0	40	n	0.06	2	31	2	31	y	0.00	0	47	0	47	n	0.02	1	50	1	50	n	0.05	3	60	3	60	y	0.00	0	27	0	27	n	0.00	0	51	0	51	n	0.07	3	41	3	41	y	0.00	0	35	0	35	n	0.03	2	61	2	61	y	0.00	0	62	0	62	n	0.03	2	64	2	64	y	ENSMUSG00000038429.11	Usp5	chr6	protein_coding	ubiquitin specific peptidase 5 (isopeptidase T)
known_NIR_15374	chr6	124803387	124804978	-	124803387	124806248	A5SS	ENSMUST00000047510.10	known	0.08	6	68	6	68	y	0.02	1	61	1	61	n	0.03	4	112	4	112	y	0.06	6	88	6	88	y	0.03	3	109	3	109	y	0.00	0	46	0	46	n	0.04	4	90	4	90	y	0.08	5	56	5	56	y	0.12	8	60	8	60	y	0.05	6	107	6	107	y	0.15	14	80	14	80	y	0.09	9	91	9	91	y	ENSMUSG00000038429.11	Usp5	chr6	protein_coding	ubiquitin specific peptidase 5 (isopeptidase T)
known_NIR_15375	chr6	124891195	124891598	-	124891195;124891429	124891371;124891598	ES	ENSMUST00000032216.7	known	0.00	4	2906.0	4	2841;2971	y	0.00	5	2789.5	5	2690;2889	y	0.00	2	1348.5	2	1287;1410	y	0.00	7	2795.5	7	2686;2905	y	0.00	2	2749.0	2	2630;2868	y	0.00	0	855.5	0	838;873	n	0.00	3	3074.5	3	2977;3172	y	0.01	6	974.0	6	982;966	y	0.00	5	3104.0	5	2947;3261	y	0.00	3	4294.5	3	4199;4390	y	0.00	1	3987.0	1	3912;4062	n	0.00	3	4029.5	3	3960;4099	y	ENSMUSG00000030122.13	Ptms	chr6	protein_coding	parathymosin
known_NIR_15376	chr6	124891952	124892323	-	124891952	124894523	A5SS	ENSMUST00000032216.7	known	0.00	3	1901	3	1901	y	0.00	0	1821	0	1821	n	0.00	0	815	0	815	n	0.00	0	1945	0	1945	n	0.00	2	1957	2	1957	y	0.00	0	529	0	529	n	0.00	2	1712	2	1712	y	0.00	0	652	0	652	n	0.00	4	1705	4	1705	y	0.00	3	2596	3	2596	y	0.00	0	2503	0	2503	n	0.00	5	2673	5	2673	y	ENSMUSG00000030122.13	Ptms	chr6	protein_coding	parathymosin
known_NIR_15377	chr6	124891952	124897002	-	124891952	124894523	5pMXE	ENSMUST00000032216.7	known	0.00	2	1901	2	1901	y	0.00	0	1821	0	1821	n	0.00	0	815	0	815	n	0.00	3	1945	3	1945	y	0.00	1	1957	1	1957	n	0.00	0	529	0	529	n	0.00	4	1712	4	1712	y	0.00	0	652	0	652	n	0.00	2	1705	2	1705	y	0.00	0	2596	0	2596	n	0.00	2	2503	2	2503	y	0.00	3	2673	3	2673	y	ENSMUSG00000030122.13	Ptms	chr6	protein_coding	parathymosin
known_NIR_15378	chr6	124912408	124912565	+	124912408	124912586	A3SS	ENSMUST00000180095.4	known	0.01	5	363	5	363	y	0.04	13	355	13	355	y	0.04	15	393	15	393	y	0.05	18	346	18	346	y	0.02	9	440	9	440	y	0.03	7	240	7	240	y	0.03	16	456	16	456	y	0.05	11	221	11	221	y	0.01	3	344	3	344	y	0.04	22	539	22	539	y	0.03	15	440	15	440	y	0.03	12	456	12	456	y	ENSMUSG00000030120.15	Mlf2	chr6	protein_coding	myeloid leukemia factor 2
known_NIR_15379	chr6	124936600	124936762	-	124935735	124936762	A3SS	ENSMUST00000112439.9	known	0.84	120	23	120	23	y	0.87	121	18	121	18	y	0.90	149	17	149	17	y	0.90	103	11	103	11	y	0.91	172	16	172	16	y	0.85	96	17	96	17	y	0.91	164	16	164	16	y	0.95	97	5	97	5	y	0.92	109	9	109	9	y	0.89	175	21	175	21	y	0.87	151	23	151	23	y	0.92	154	14	154	14	y	ENSMUSG00000030127.16	Cops7a	chr6	protein_coding	COP9 signalosome subunit 7A
known_NIR_15380	chr6	124941891	124942182	-	124941891	124942248	A5SS	ENSMUST00000032220.15	known	0.60	3	2	3	2	n	0.40	2	3	2	3	n	0.10	1	9	1	9	n	0.36	4	7	4	7	y	0.15	2	11	2	11	y	0.14	1	6	1	6	n	0.17	2	10	2	10	y	0.00	0	5	0	5	n	0.43	3	4	3	4	n	0.15	2	11	2	11	y	0.17	2	10	2	10	y	0.10	1	9	1	9	n	ENSMUSG00000030127.16	Cops7a	chr6	protein_coding	COP9 signalosome subunit 7A
known_NIR_15381	chr6	124941891	124942182	-	124941891	124942365	A5SS	ENSMUST00000112439.9	known	0.05	3	62	3	62	y	0.04	2	45	2	45	y	0.01	1	72	1	72	n	0.07	4	53	4	53	y	0.03	2	70	2	70	y	0.02	1	42	1	42	n	0.03	2	64	2	64	y	0.00	0	26	0	26	n	0.09	3	32	3	32	y	0.03	2	60	2	60	y	0.03	2	57	2	57	y	0.02	1	52	1	52	n	ENSMUSG00000030127.16	Cops7a	chr6	protein_coding	COP9 signalosome subunit 7A
known_NIR_15382	chr6	124941891	124942248	-	124941891	124942365	A5SS	ENSMUST00000112439.9	known	0.03	2	62	2	62	y	0.06	3	45	3	45	y	0.11	9	72	9	72	y	0.12	7	53	7	53	y	0.14	11	70	11	70	y	0.12	6	42	6	42	y	0.14	10	64	10	64	y	0.16	5	26	5	26	y	0.11	4	32	4	32	y	0.15	11	60	11	60	y	0.15	10	57	10	57	y	0.15	9	52	9	52	y	ENSMUSG00000030127.16	Cops7a	chr6	protein_coding	COP9 signalosome subunit 7A
known_NIR_15383	chr6	124941891	124942337	-	124941891	124942248	A5SS	ENSMUST00000032220.15	known	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.25	3	9	3	9	y	0.22	2	7	2	7	n	0.15	2	11	2	11	y	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.09	1	10	1	10	n	0.00	0	9	0	9	n	ENSMUSG00000030127.16	Cops7a	chr6	protein_coding	COP9 signalosome subunit 7A
known_NIR_15384	chr6	124941891	124942337	-	124941891	124942365	A5SS	ENSMUST00000112439.9	known	0.02	1	62	1	62	n	0.00	0	45	0	45	n	0.04	3	72	3	72	y	0.04	2	53	2	53	y	0.03	2	70	2	70	y	0.00	0	42	0	42	n	0.00	0	64	0	64	n	0.04	1	26	1	26	n	0.00	0	32	0	32	n	0.00	0	60	0	60	n	0.02	1	57	1	57	n	0.00	0	52	0	52	n	ENSMUSG00000030127.16	Cops7a	chr6	protein_coding	COP9 signalosome subunit 7A
known_NIR_15385	chr6	124986462	124987344	+	124986208	124987344	A5SS	ENSMUST00000132863.8	known	0.73	11	4	11	4	y	1.00	11	0	11	0	n	0.94	16	1	16	1	n	0.94	15	1	15	1	n	1.00	10	0	10	0	n	0.83	10	2	10	2	y	1.00	10	0	10	0	n	0.91	10	1	10	1	n	0.67	2	1	2	1	n	0.88	15	2	15	2	y	0.90	9	1	9	1	n	0.95	19	1	19	1	n	ENSMUSG00000038346.19	Zfp384	chr6	protein_coding	zinc finger protein 384
known_NIR_15386	chr6	124986864	124987344	+	124986208	124987344	A5SS	ENSMUST00000132863.8	known	0.69	9	4	9	4	y	1.00	8	0	8	0	n	0.83	5	1	5	1	n	0.88	7	1	7	1	n	1.00	10	0	10	0	n	0.67	4	2	4	2	n	1.00	14	0	14	0	n	0.88	7	1	7	1	n	0.83	5	1	5	1	n	0.80	8	2	8	2	y	0.89	8	1	8	1	n	0.90	9	1	9	1	n	ENSMUSG00000038346.19	Zfp384	chr6	protein_coding	zinc finger protein 384
known_NIR_15387	chr6	124986864	124987344	+	124986462	124987344	A5SS	ENSMUST00000112428.8	known	0.45	9	11	9	11	y	0.42	8	11	8	11	y	0.24	5	16	5	16	y	0.32	7	15	7	15	y	0.50	10	10	10	10	y	0.29	4	10	4	10	y	0.58	14	10	14	10	y	0.41	7	10	7	10	y	0.71	5	2	5	2	n	0.35	8	15	8	15	y	0.47	8	9	8	9	y	0.32	9	19	9	19	y	ENSMUSG00000038346.19	Zfp384	chr6	protein_coding	zinc finger protein 384
known_NIR_15388	chr6	125001233	125001377	+	125001233	125001468	A3SS	ENSMUST00000145138.8	known	0.07	3	37	3	37	y	0.17	4	20	4	20	y	0.12	6	46	6	46	y	0.18	7	31	7	31	y	0.10	5	47	5	47	y	0.12	3	23	3	23	y	0.00	0	34	0	34	n	0.06	2	30	2	30	y	0.14	4	24	4	24	y	0.09	3	30	3	30	y	0.06	1	16	1	16	n	0.09	4	41	4	41	y	ENSMUSG00000038346.19	Zfp384	chr6	protein_coding	zinc finger protein 384
known_NIR_15389	chr6	125001233	125001468	+	125001233	125001826	A3SS	ENSMUST00000054553.11	known	1.00	37	0	37	0	n	1.00	20	0	20	0	n	0.98	46	1	46	1	n	0.97	31	1	31	1	n	0.96	47	2	47	2	y	1.00	23	0	23	0	n	0.97	34	1	34	1	n	1.00	30	0	30	0	n	1.00	24	0	24	0	n	1.00	30	0	30	0	n	1.00	16	0	16	0	n	1.00	41	0	41	0	n	ENSMUSG00000038346.19	Zfp384	chr6	protein_coding	zinc finger protein 384
known_NIR_15390	chr6	125001233	125001709	+	125001233;125001515	125001377;125001709	ES	ENSMUST00000131555.8	known	0.10	2	19.0	2	3;35	y	0.00	0	15.0	0	4;26	n	0.07	2	26.0	2	6;46	y	0.00	0	19.0	0	7;31	n	0.07	2	27.5	2	5;50	y	0.00	0	11.0	0	3;19	n	0.00	0	16.0	0	0;32	n	0.00	0	17.0	0	2;32	n	0.00	0	10.5	0	4;17	n	0.22	4	14.5	4	3;26	y	0.00	0	10.0	0	1;19	n	0.19	6	26.0	6	4;48	y	ENSMUSG00000038346.19	Zfp384	chr6	protein_coding	zinc finger protein 384
known_NIR_15391	chr6	125001233	125001709	+	125001233;125001515	125001468;125001709	ES	ENSMUST00000145138.8	known	0.05	2	36.0	2	37;35	y	0.00	0	23.0	0	20;26	n	0.04	2	46.0	2	46;46	y	0.00	0	31.0	0	31;31	n	0.04	2	48.5	2	47;50	y	0.00	0	21.0	0	23;19	n	0.00	0	33.0	0	34;32	n	0.00	0	31.0	0	30;32	n	0.00	0	20.5	0	24;17	n	0.12	4	28.0	4	30;26	y	0.00	0	17.5	0	16;19	n	0.12	6	44.5	6	41;48	y	ENSMUSG00000038346.19	Zfp384	chr6	protein_coding	zinc finger protein 384
known_NIR_15392	chr6	125001233	125001709	+	125001515	125001709	A5SS	ENSMUST00000132863.8	known	0.05	2	35	2	35	y	0.00	0	26	0	26	n	0.04	2	46	2	46	y	0.00	0	31	0	31	n	0.04	2	50	2	50	y	0.00	0	19	0	19	n	0.00	0	32	0	32	n	0.00	0	32	0	32	n	0.00	0	17	0	17	n	0.13	4	26	4	26	y	0.00	0	19	0	19	n	0.11	6	48	6	48	y	ENSMUSG00000038346.19	Zfp384	chr6	protein_coding	zinc finger protein 384
known_NIR_15393	chr6	125002045;125002903	125002811;125007761	+	125002045	125007761	cassetteExon	ENSMUST00000132863.8	known	0.44	29.5	37	41;18	37	y	0.54	21.0	18	28;14	18	y	0.35	25.0	47	33;17	47	y	0.47	21.5	24	25;18	24	y	0.46	28.5	34	33;24	34	y	0.62	28.0	17	32;24	17	y	0.49	26.0	27	24;28	27	y	0.53	22.5	20	24;21	20	y	0.58	20.5	15	27;14	15	y	0.45	18.5	23	21;16	23	y	0.55	20.5	17	15;26	17	y	0.33	19.0	39	17;21	39	y	ENSMUSG00000038346.19	Zfp384	chr6	protein_coding	zinc finger protein 384
known_NIR_15394	chr6	125002045;125003282	125002811;125007761	+	125002045	125007761	cassetteExon	ENSMUST00000132863.8	known	0.38	22.5	37	41;4	37	y	0.47	16.0	18	28;4	18	y	0.27	17.0	47	33;1	47	n	0.36	13.5	24	25;2	24	y	0.35	18.5	34	33;4	34	y	0.51	17.5	17	32;3	17	y	0.36	15.5	27	24;7	27	y	0.40	13.5	20	24;3	20	y	0.48	14.0	15	27;1	15	n	0.32	11.0	23	21;1	23	n	0.35	9.0	17	15;3	17	y	0.21	10.5	39	17;4	39	y	ENSMUSG00000038346.19	Zfp384	chr6	protein_coding	zinc finger protein 384
known_NIR_15395	chr6	125002903;125003282	125003220;125007761	+	125002903	125007761	cassetteExon	ENSMUST00000145138.8	known	0.16	3.5	18	3;4	18	y	0.15	2.5	14	1;4	14	n	0.08	1.5	17	2;1	17	n	0.12	2.5	18	3;2	18	y	0.09	2.5	24	1;4	24	n	0.08	2.0	24	1;3	24	n	0.21	7.5	28	8;7	28	y	0.16	4.0	21	5;3	21	y	0.03	0.5	14	0;1	14	n	0.11	2.0	16	3;1	16	n	0.10	3.0	26	3;3	26	y	0.11	2.5	21	1;4	21	n	ENSMUSG00000038346.19	Zfp384	chr6	protein_coding	zinc finger protein 384
known_NIR_15396	chr6	125007985	125008217	+	125007985	125010203	A3SS	ENSMUST00000132863.8	known	0.00	0	30	0	30	n	0.00	0	16	0	16	n	0.00	0	36	0	36	n	0.00	0	35	0	35	n	0.00	0	43	0	43	n	0.05	1	18	1	18	n	0.00	0	36	0	36	n	0.05	1	19	1	19	n	0.05	1	19	1	19	n	0.03	1	37	1	37	n	0.08	2	22	2	22	y	0.00	0	52	0	52	n	ENSMUSG00000038346.19	Zfp384	chr6	protein_coding	zinc finger protein 384
known_NIR_15397	chr6	125007985	125010203	+	125007985	125008634	3pMXE	ENSMUST00000144308.8	known	0.67	30	15	30	15	y	0.57	16	12	16	12	y	0.55	36	29	36	29	y	0.73	35	13	35	13	y	0.69	43	19	43	19	y	0.60	18	12	18	12	y	0.64	36	20	36	20	y	0.53	19	17	19	17	y	0.73	19	7	19	7	y	0.79	37	10	37	10	y	0.65	22	12	22	12	y	0.70	52	22	52	22	y	ENSMUSG00000038346.19	Zfp384	chr6	protein_coding	zinc finger protein 384
known_NIR_15398	chr6	125007985	125010203	+	125008816	125010203	A5SS	ENSMUST00000137325.2	known	0.49	30	31	30	31	y	0.32	16	34	16	34	y	0.55	36	30	36	30	y	0.40	35	53	35	53	y	0.50	43	43	43	43	y	0.55	18	15	18	15	y	0.50	36	36	36	36	y	0.51	19	18	19	18	y	0.50	19	19	19	19	y	0.46	37	43	37	43	y	0.45	22	27	22	27	y	0.55	52	43	52	43	y	ENSMUSG00000038346.19	Zfp384	chr6	protein_coding	zinc finger protein 384
known_NIR_15399	chr6	125007985;125008816	125008634;125010203	+	125007985	125010203	cassetteExon	ENSMUST00000132863.8	known	0.43	23.0	30	15;31	30	y	0.59	23.0	16	12;34	16	y	0.45	29.5	36	29;30	36	y	0.49	33.0	35	13;53	35	y	0.42	31.0	43	19;43	43	y	0.43	13.5	18	12;15	18	y	0.44	28.0	36	20;36	36	y	0.48	17.5	19	17;18	19	y	0.41	13.0	19	7;19	19	y	0.42	26.5	37	10;43	37	y	0.47	19.5	22	12;27	22	y	0.38	32.5	52	22;43	52	y	ENSMUSG00000038346.19	Zfp384	chr6	protein_coding	zinc finger protein 384
known_NIR_15400	chr6	125024279	125024445	+	125024288	125024445	A5SS	ENSMUST00000032480.14	known	0.24	20	62	20	62	y	0.26	21	60	21	60	y	0.28	20	51	20	51	y	0.25	23	69	23	69	y	0.34	32	61	32	61	y	0.34	15	29	15	29	y	0.22	24	87	24	87	y	0.34	21	40	21	40	y	0.24	19	60	19	60	y	0.34	33	65	33	65	y	0.12	10	70	10	70	y	0.27	26	70	26	70	y	ENSMUSG00000030330.16	Ing4	chr6	protein_coding	inhibitor of growth family, member 4
known_NIR_15401	chr6	125024288	125024445	+	125024288	125024442	A3SS	ENSMUST00000140131.8	known	0.94	62	4	62	4	y	0.91	60	6	60	6	y	0.85	51	9	51	9	y	0.91	69	7	69	7	y	0.94	61	4	61	4	y	0.83	29	6	29	6	y	0.87	87	13	87	13	y	0.87	40	6	40	6	y	0.88	60	8	60	8	y	0.89	65	8	65	8	y	0.88	70	10	70	10	y	0.96	70	3	70	3	y	ENSMUSG00000030330.16	Ing4	chr6	protein_coding	inhibitor of growth family, member 4
known_NIR_15402	chr6	125024550	125024865	+	125024550	125024756	A3SS	ENSMUST00000140131.8	known	0.08	7	81	7	81	y	0.05	4	80	4	80	y	0.06	4	64	4	64	y	0.03	3	99	3	99	y	0.00	0	103	0	103	n	0.01	1	71	1	71	n	0.09	11	110	11	110	y	0.03	2	65	2	65	y	0.05	4	72	4	72	y	0.07	8	112	8	112	y	0.06	6	95	6	95	y	0.03	3	98	3	98	y	ENSMUSG00000030330.16	Ing4	chr6	protein_coding	inhibitor of growth family, member 4
known_NIR_15403	chr6	125077552	125077741	+	125077552	125077762	A3SS	ENSMUST00000112392.8	known	0.33	8	16	8	16	y	0.36	4	7	4	7	y	0.34	23	44	23	44	y	0.30	14	33	14	33	y	0.41	26	37	26	37	y	0.30	7	16	7	16	y	0.29	11	27	11	27	y	0.62	25	15	25	15	y	0.33	10	20	10	20	y	0.35	12	22	12	22	y	0.32	6	13	6	13	y	0.53	21	19	21	19	y	ENSMUSG00000063870.13	Chd4	chr6	protein_coding	chromodomain helicase DNA binding protein 4
known_NIR_15404	chr6	125079261	125079395	+	125079261	125079434	A3SS	ENSMUST00000112392.8	known	0.51	22	21	22	21	y	0.36	9	16	9	16	y	0.52	35	32	35	32	y	0.49	22	23	22	23	y	0.53	31	28	31	28	y	0.50	11	11	11	11	y	0.48	27	29	27	29	y	0.51	26	25	26	25	y	0.60	18	12	18	12	y	0.41	23	33	23	33	y	0.69	27	12	27	12	y	0.44	22	28	22	28	y	ENSMUSG00000063870.13	Chd4	chr6	protein_coding	chromodomain helicase DNA binding protein 4
known_NIR_15405	chr6	125126145	125126552	+	125122992	125126552	A5SS	ENSMUST00000119527.8	known	0.50	4	4	4	4	n	0.50	4	4	4	4	n	0.44	7	9	7	9	y	0.44	4	5	4	5	n	0.31	5	11	5	11	y	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.20	1	4	1	4	n	0.00	0	5	0	5	n	0.36	5	9	5	9	y	0.50	3	3	3	3	n	0.30	3	7	3	7	y	ENSMUSG00000038271.18	Iffo1	chr6	protein_coding	intermediate filament family orphan 1
known_NIR_15406	chr6	125128488	125129577	+	125128488	125128758	A3SS	ENSMUST00000135559.8	known	0.73	8	3	8	3	y	0.18	2	9	2	9	y	0.17	2	10	2	10	y	0.44	4	5	4	5	n	0.29	7	17	7	17	y	0.17	2	10	2	10	y	0.21	3	11	3	11	y	0.00	0	4	0	4	n	0.38	3	5	3	5	n	0.09	1	10	1	10	n	0.22	2	7	2	7	n	0.25	1	3	1	3	n	ENSMUSG00000038271.18	Iffo1	chr6	protein_coding	intermediate filament family orphan 1
known_NIR_15407	chr6	125128488;125128766	125128758;125129577	+	125128488	125129577	cassetteExon	ENSMUST00000119527.8	known	0.24	2.5	8	3;2	8	y	0.76	6.5	2	9;4	2	y	0.80	8.0	2	10;6	2	y	0.47	3.5	4	5;2	4	y	0.66	13.5	7	17;10	7	y	0.75	6.0	2	10;2	2	y	0.73	8.0	3	11;5	3	y	1.00	2.0	0	4;0	0	n	0.50	3.0	3	5;1	3	n	0.88	7.0	1	10;4	1	n	0.73	5.5	2	7;4	2	y	0.78	3.5	1	3;4	1	n	ENSMUSG00000038271.18	Iffo1	chr6	protein_coding	intermediate filament family orphan 1
known_NIR_15408	chr6	125130125	125130370	+	125130125	125130373	A3SS	ENSMUST00000119527.8	known	0.70	14	6	14	6	y	0.71	5	2	5	2	n	0.52	13	12	13	12	y	0.69	18	8	18	8	y	0.74	17	6	17	6	y	0.81	13	3	13	3	y	0.63	19	11	19	11	y	0.53	9	8	9	8	y	0.64	9	5	9	5	y	0.77	17	5	17	5	y	0.55	11	9	11	9	y	0.65	15	8	15	8	y	ENSMUSG00000038271.18	Iffo1	chr6	protein_coding	intermediate filament family orphan 1
known_NIR_15409	chr6	125140399	125141816	-	125140399	125142234	A5SS	ENSMUST00000117757.9	known	0.00	0	2137	0	2137	n	0.00	0	1725	0	1725	n	0.00	2	4035	2	4035	y	0.00	0	2467	0	2467	n	0.00	0	2845	0	2845	n	0.00	0	1900	0	1900	n	0.00	0	3388	0	3388	n	0.00	0	1555	0	1555	n	0.00	0	2114	0	2114	n	0.00	0	3054	0	3054	n	0.00	0	2680	0	2680	n	0.00	0	2969	0	2969	n	ENSMUSG00000057666.19	Gapdh	chr6	protein_coding	glyceraldehyde-3-phosphate dehydrogenase
known_NIR_15410	chr6	125140399	125142060	-	125140399	125141816	5pMXE	ENSMUST00000144205.2	known	1.00	4	0	4	0	n	1.00	5	0	5	0	n	0.86	12	2	12	2	y	1.00	1	0	1	0	n	1.00	2	0	2	0	n	-	-	-	-	-	-	1.00	5	0	5	0	n	1.00	2	0	2	0	n	-	-	-	-	-	-	1.00	4	0	4	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	n	ENSMUSG00000057666.19	Gapdh	chr6	protein_coding	glyceraldehyde-3-phosphate dehydrogenase
known_NIR_15411	chr6	125140399	125142060	-	125140399	125142234	A5SS	ENSMUST00000117757.9	known	0.00	4	2137	4	2137	y	0.00	5	1725	5	1725	y	0.00	12	4035	12	4035	y	0.00	1	2467	1	2467	n	0.00	2	2845	2	2845	y	0.00	0	1900	0	1900	n	0.00	5	3388	5	3388	y	0.00	2	1555	2	1555	y	0.00	0	2114	0	2114	n	0.00	4	3054	4	3054	y	0.00	1	2680	1	2680	n	0.00	2	2969	2	2969	y	ENSMUSG00000057666.19	Gapdh	chr6	protein_coding	glyceraldehyde-3-phosphate dehydrogenase
known_NIR_15412	chr6	125140399	125142118	-	125140399	125142234	A5SS	ENSMUST00000117757.9	known	0.00	0	2137	0	2137	n	0.00	2	1725	2	1725	y	0.00	1	4035	1	4035	n	0.00	0	2467	0	2467	n	0.00	0	2845	0	2845	n	0.00	0	1900	0	1900	n	0.00	0	3388	0	3388	n	0.00	0	1555	0	1555	n	0.00	1	2114	1	2114	n	0.00	0	3054	0	3054	n	0.00	1	2680	1	2680	n	0.00	0	2969	0	2969	n	ENSMUSG00000057666.19	Gapdh	chr6	protein_coding	glyceraldehyde-3-phosphate dehydrogenase
known_NIR_15413	chr6	125142274	125142515	-	125142274	125143357	A5SS	ENSMUST00000117757.9	known	1.00	1176	0	1176	0	n	1.00	941	0	941	0	n	1.00	2289	0	2289	0	n	1.00	1364	0	1364	0	n	1.00	1506	0	1506	0	n	1.00	966	0	966	0	n	1.00	1856	0	1856	0	n	1.00	878	2	878	2	y	1.00	1223	0	1223	0	n	1.00	1596	0	1596	0	n	1.00	1489	1	1489	1	n	1.00	1602	0	1602	0	n	ENSMUSG00000057666.19	Gapdh	chr6	protein_coding	glyceraldehyde-3-phosphate dehydrogenase
known_NIR_15414	chr6	125169396	125169479	+	125169171	125169479	A5SS	ENSMUST00000136804.2	known	0.98	495	12	495	12	y	0.98	544	13	544	13	y	0.99	537	8	537	8	y	0.98	452	10	452	10	y	0.98	582	13	582	13	y	0.98	336	7	336	7	y	0.97	694	19	694	19	y	0.98	330	6	330	6	y	0.97	439	12	439	12	y	0.97	686	23	686	23	y	0.98	549	13	549	13	y	0.98	560	12	560	12	y	ENSMUSG00000030335.7	Mrpl51	chr6	protein_coding	mitochondrial ribosomal protein L51
known_NIR_15415	chr6	126917273	126919275	+	126916989	126919275	A5SS	ENSMUST00000202086.4	known	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.07	1	13	1	13	n	0.00	0	7	0	7	n	0.13	2	13	2	13	y	0.25	1	3	1	3	n	0.10	1	9	1	9	n	0.14	1	6	1	6	n	0.12	1	7	1	7	n	0.00	0	10	0	10	n	0.20	1	4	1	4	n	0.00	0	6	0	6	n	ENSMUSG00000030347.7	D6Wsu163e	chr6	protein_coding	DNA segment, Chr 6, Wayne State University 163, expressed
known_NIR_15416	chr6	127445115	127447668	+	127445115	127447665	A3SS	ENSMUST00000112195.8	known	0.12	1	7	1	7	n	0.38	3	5	3	5	n	0.00	0	8	0	8	n	0.33	2	4	2	4	n	0.00	0	9	0	9	n	0.50	1	1	1	1	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.29	5	12	5	12	y	0.00	0	5	0	5	n	0.29	2	5	2	5	n	ENSMUSG00000037997.13	Parp11	chr6	protein_coding	poly (ADP-ribose) polymerase family, member 11
known_NIR_15417	chr6	127447793	127451199	+	127447793	127448511	3pMXE	ENSMUST00000128470.8	known	1.00	2	0	2	0	n	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.17	1	5	1	5	n	0.50	2	2	2	2	n	0.71	5	2	5	2	n	0.29	2	5	2	5	n	1.00	1	0	1	0	n	1.00	2	0	2	0	n	0.18	2	9	2	9	y	0.00	0	1	0	1	n	0.50	3	3	3	3	n	ENSMUSG00000037997.13	Parp11	chr6	protein_coding	poly (ADP-ribose) polymerase family, member 11
known_NIR_15418	chr6	127447793	127451199	+	127447793;127448631	127448511;127451199	ES	ENSMUST00000112195.8	known	0.67	2	1.0	2	0;2	n	0.29	1	2.5	1	3;2	n	0.00	0	4.0	0	5;3	n	0.25	1	3.0	1	5;1	n	0.44	2	2.5	2	2;3	n	0.83	5	1.0	5	2;0	n	0.31	2	4.5	2	5;4	y	0.67	1	0.5	1	0;1	n	0.80	2	0.5	2	0;1	n	0.27	2	5.5	2	9;2	y	0.00	0	2.0	0	1;3	n	0.55	3	2.5	3	3;2	n	ENSMUSG00000037997.13	Parp11	chr6	protein_coding	poly (ADP-ribose) polymerase family, member 11
known_NIR_15419	chr6	128011208;128055089	128054990;128060345	-	128011208	128060345	cassetteExon	ENSMUST00000112171.8	known	0.10	4.0	38	3;5	38	y	0.07	1.5	21	0;3	21	n	0.07	3.5	49	4;3	49	y	0.04	1.5	33	1;2	33	n	0.10	5.0	44	6;4	44	y	0.06	2.5	41	3;2	41	y	0.08	3.0	33	3;3	33	y	0.02	1.0	40	1;1	40	n	0.05	1.0	20	2;0	20	n	0.03	1.5	51	3;0	51	n	0.02	0.5	24	0;1	24	n	0.06	3.0	46	4;2	46	y	ENSMUSG00000030352.16	Tspan9	chr6	protein_coding	tetraspanin 9
known_NIR_15420	chr6	128011208;128060444	128060345;128120477	-	128011208	128120477	cassetteExon	ENSMUST00000112173.8	known	1.00	32.5	0	38;27	0	n	0.86	18.5	3	21;16	3	y	0.95	42.0	2	49;35	2	y	1.00	28.0	0	33;23	0	n	1.00	34.0	0	44;24	0	n	0.94	30.5	2	41;20	2	y	1.00	26.5	0	33;20	0	n	1.00	29.0	0	40;18	0	n	1.00	16.0	0	20;12	0	n	0.98	39.5	1	51;28	1	n	1.00	17.5	0	24;11	0	n	1.00	35.5	0	46;25	0	n	ENSMUSG00000030352.16	Tspan9	chr6	protein_coding	tetraspanin 9
known_NIR_15421	chr6	128058864	128060345	-	128011208	128060345	A3SS	ENSMUST00000112171.8	known	0.10	4	38	4	38	y	0.00	0	21	0	21	n	0.02	1	49	1	49	n	0.06	2	33	2	33	y	0.00	0	44	0	44	n	0.02	1	41	1	41	n	0.00	0	33	0	33	n	0.00	0	40	0	40	n	0.00	0	20	0	20	n	0.00	0	51	0	51	n	0.00	0	24	0	24	n	0.00	0	46	0	46	n	ENSMUSG00000030352.16	Tspan9	chr6	protein_coding	tetraspanin 9
known_NIR_15422	chr6	128060444	128101179	-	128060444	128120477	A5SS	ENSMUST00000032503.12	known	0.00	0	27	0	27	n	0.00	0	16	0	16	n	0.05	2	35	2	35	y	0.00	0	23	0	23	n	0.00	0	24	0	24	n	0.09	2	20	2	20	y	0.00	0	20	0	20	n	0.10	2	18	2	18	y	0.00	0	12	0	12	n	0.00	0	28	0	28	n	0.00	0	11	0	11	n	0.00	0	25	0	25	n	ENSMUSG00000030352.16	Tspan9	chr6	protein_coding	tetraspanin 9
known_NIR_15423	chr6	128336317	128339802	-	128336317	128339331	A5SS	ENSMUST00000057421.15	known	0.11	1	8	1	8	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.50	4	4	4	4	n	0.33	2	4	2	4	n	0.42	5	7	5	7	y	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.14	1	6	1	6	n	0.00	0	2	0	2	n	0.42	5	7	5	7	y	ENSMUSG00000048668.17	Rhno1	chr6	protein_coding	RAD9-HUS1-RAD1 interacting nuclear orphan 1
known_NIR_15424	chr6	128391247	128392881	-	128391247	128392859	A5SS	ENSMUST00000001559.11	known	0.00	0	19	0	19	n	0.00	0	17	0	17	n	0.00	0	42	0	42	n	0.00	0	21	0	21	n	0.00	0	32	0	32	n	0.00	0	21	0	21	n	0.00	0	21	0	21	n	0.00	0	15	0	15	n	0.00	0	17	0	17	n	0.00	0	22	0	22	n	0.00	0	19	0	19	n	0.08	2	23	2	23	y	ENSMUSG00000001518.13	Itfg2	chr6	protein_coding	integrin alpha FG-GAP repeat containing 2
known_NIR_15425	chr6	128391247	128393220	-	128391247;128393027	128392859;128393220	ES	ENSMUST00000001559.11	known	0.00	0	21.5	0	19;24	n	0.00	0	16.0	0	17;15	n	0.06	2	32.5	2	42;23	y	0.05	1	19.0	1	21;17	n	0.00	0	33.5	0	32;35	n	0.05	1	17.5	1	21;14	n	0.04	1	21.5	1	21;22	n	0.00	0	19.0	0	15;23	n	0.00	0	19.0	0	17;21	n	0.09	2	20.0	2	22;18	y	0.00	0	16.5	0	19;14	n	0.05	1	20.5	1	23;18	n	ENSMUSG00000001518.13	Itfg2	chr6	protein_coding	integrin alpha FG-GAP repeat containing 2
known_NIR_15426	chr6	128413677	128414573	-	128413677	128415369	A5SS	ENSMUST00000139448.7	known	0.03	10	319	10	319	y	0.03	5	189	5	189	y	0.12	13	95	13	95	y	0.02	9	365	9	365	y	0.06	20	290	20	290	y	0.11	8	64	8	64	y	0.06	17	263	17	263	y	0.08	7	79	7	79	y	0.02	4	235	4	235	y	0.05	17	298	17	298	y	0.03	8	296	8	296	y	0.03	8	304	8	304	y	ENSMUSG00000030357.11	Fkbp4	chr6	protein_coding	FK506 binding protein 4
known_NIR_15427	chr6	128499147	128500740	-	128499147;128499723	128499703;128500740	ES	ENSMUST00000112132.8	known	0.00	0	3265.5	0	3289;3242	n	0.00	0	2228.5	0	2265;2192	n	0.00	2	10598.5	2	10784;10413	y	0.00	3	6367.0	3	6394;6340	y	0.00	11	10789.5	11	10822;10757	y	0.00	7	6876.0	7	6927;6825	y	0.00	0	6015.5	0	6041;5990	n	0.00	7	9807.0	7	9887;9727	y	0.00	0	3535.5	0	3557;3514	n	0.00	9	6618.5	9	6589;6648	y	0.00	1	2771.5	1	2756;2787	n	0.00	0	6567.5	0	6645;6490	n	ENSMUSG00000030359.15	Pzp	chr6	protein_coding	PZP, alpha-2-macroglobulin like
known_NIR_15428	chr6	129193499	129204591	-	129193499	129214702	A5SS	ENSMUST00000181238.2	known	0.57	4	3	4	3	n	0.62	8	5	8	5	y	-	-	-	-	-	-	0.75	6	2	6	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	n	1.00	3	0	3	0	n	0.78	7	2	7	2	n	0.60	3	2	3	2	n	0.90	9	1	9	1	n	0.78	7	2	7	2	n	ENSMUSG00000097354.8	2310001H17Rik	chr6	lncRNA	RIKEN cDNA 2310001H17 gene
known_NIR_15429	chr6	129193499;129204737	129204591;129210027	-	129193499	129210027	cassetteExon	ENSMUST00000181517.8	known	0.54	3.5	3	4;3	3	y	0.40	4.0	6	8;0	6	n	1.00	0.5	0	0;1	0	n	0.62	5.0	3	6;4	3	y	0.08	0.5	6	0;1	6	n	0.50	2.0	2	0;4	2	n	0.24	2.5	8	2;3	8	y	1.00	2.5	0	3;2	0	n	0.54	7.0	6	7;7	6	y	0.56	5.0	4	3;7	4	y	0.40	6.0	9	9;3	9	y	0.39	6.5	10	7;6	10	y	ENSMUSG00000097354.8	2310001H17Rik	chr6	lncRNA	RIKEN cDNA 2310001H17 gene
known_NIR_15430	chr6	129193499;129210116	129210027;129214702	-	129193499	129214702	cassetteExon	ENSMUST00000181238.2	known	0.93	37.5	3	3;72	3	y	0.89	39.5	5	6;73	5	y	1.00	5.0	0	0;10	0	n	0.94	33.0	2	3;63	2	y	0.95	34.5	2	6;63	2	y	1.00	6.5	0	2;11	0	n	1.00	47.0	0	8;86	0	n	1.00	14.0	0	0;28	0	n	0.97	62.0	2	6;118	2	y	0.96	55.0	2	4;106	2	y	0.99	70.5	1	9;132	1	n	0.97	67.0	2	10;124	2	y	ENSMUSG00000097354.8	2310001H17Rik	chr6	lncRNA	RIKEN cDNA 2310001H17 gene
known_NIR_15431	chr6	129209910	129210027	-	129193499	129210027	A3SS	ENSMUST00000181517.8	known	0.97	98	3	98	3	y	0.93	78	6	78	6	y	1.00	12	0	12	0	n	0.97	99	3	99	3	y	0.93	79	6	79	6	y	0.88	15	2	15	2	y	0.92	98	8	98	8	y	1.00	16	0	16	0	n	0.95	125	6	125	6	y	0.98	168	4	168	4	y	0.93	118	9	118	9	y	0.93	142	10	142	10	y	ENSMUSG00000097354.8	2310001H17Rik	chr6	lncRNA	RIKEN cDNA 2310001H17 gene
known_NIR_15432	chr6	129209910	129210027	-	129204737	129210027	A3SS	ENSMUST00000205051.3	known	0.97	98	3	98	3	y	1.00	78	0	78	0	n	0.92	12	1	12	1	n	0.96	99	4	99	4	y	0.99	79	1	79	1	n	0.79	15	4	15	4	y	0.97	98	3	98	3	y	0.89	16	2	16	2	y	0.95	125	7	125	7	y	0.96	168	7	168	7	y	0.98	118	3	118	3	y	0.96	142	6	142	6	y	ENSMUSG00000097354.8	2310001H17Rik	chr6	lncRNA	RIKEN cDNA 2310001H17 gene
known_NIR_15433	chr6	129210116	129210859	-	129210116	129214702	A5SS	ENSMUST00000205051.3	known	0.06	5	72	5	72	y	0.00	0	73	0	73	n	0.17	2	10	2	10	y	0.02	1	63	1	63	n	0.00	0	63	0	63	n	0.00	0	11	0	11	n	0.04	4	86	4	86	y	0.10	3	28	3	28	y	0.00	0	118	0	118	n	0.00	0	106	0	106	n	0.03	4	132	4	132	y	0.03	4	124	4	124	y	ENSMUSG00000097354.8	2310001H17Rik	chr6	lncRNA	RIKEN cDNA 2310001H17 gene
known_NIR_15434	chr6	129210116	129214702	-	129210116	129210848	5pMXE	ENSMUST00000181517.8	known	1.00	72	0	72	0	n	1.00	73	0	73	0	n	0.91	10	1	10	1	n	1.00	63	0	63	0	n	1.00	63	0	63	0	n	1.00	11	0	11	0	n	0.98	86	2	86	2	y	1.00	28	0	28	0	n	0.98	118	2	118	2	y	0.98	106	2	106	2	y	0.98	132	3	132	3	y	0.98	124	2	124	2	y	ENSMUSG00000097354.8	2310001H17Rik	chr6	lncRNA	RIKEN cDNA 2310001H17 gene
known_NIR_15435	chr6	129374641	129378435	+	129374641;129377118	129377023;129378435	ES	ENSMUST00000032262.14	known	0.00	0	41.5	0	40;43	n	0.04	1	22.5	1	21;24	n	0.05	2	39.5	2	42;37	y	0.00	0	20.0	0	12;28	n	0.00	0	39.5	0	37;42	n	0.04	1	26.0	1	27;25	n	0.03	1	37.5	1	29;46	n	0.07	2	25.5	2	18;33	y	0.00	0	16.0	0	10;22	n	0.03	1	30.0	1	28;32	n	0.03	1	28.5	1	26;31	n	0.09	2	20.0	2	22;18	y	ENSMUSG00000030159.16	Clec1b	chr6	protein_coding	C-type lectin domain family 1, member b
known_NIR_15436	chr6	129378560	129380524	+	129378560;129378856	129378705;129380524	ES	ENSMUST00000032262.14	known	0.00	0	48.0	0	41;55	n	0.04	2	47.0	2	56;38	y	0.00	0	35.0	0	45;25	n	0.00	0	25.5	0	35;16	n	0.00	0	54.5	0	62;47	n	0.00	0	32.5	0	32;33	n	0.00	0	40.5	0	48;33	n	0.00	0	29.5	0	33;26	n	0.00	0	17.0	0	15;19	n	0.00	0	24.5	0	28;21	n	0.00	0	40.0	0	47;33	n	0.00	0	30.0	0	38;22	n	ENSMUSG00000030159.16	Clec1b	chr6	protein_coding	C-type lectin domain family 1, member b
known_NIR_15437	chr6	129510461	129514454	+	129510499	129514454	A5SS	ENSMUST00000032264.9	known	0.02	13	588	13	588	y	0.01	7	563	7	563	y	0.02	8	414	8	414	y	0.00	0	729	0	729	n	0.02	20	869	20	869	y	0.00	0	231	0	231	n	0.02	19	879	19	879	y	0.00	0	309	0	309	n	0.02	13	729	13	729	y	0.02	25	1115	25	1115	y	0.01	12	788	12	788	y	0.01	17	1197	17	1197	y	ENSMUSG00000030161.9	Gabarapl1	chr6	protein_coding	gamma-aminobutyric acid (GABA) A receptor-associated protein-like 1
known_NIR_15438	chr6	129510706	129514454	+	129510461	129514454	A5SS	ENSMUST00000204487.3	known	0.13	2	13	2	13	y	0.12	1	7	1	7	n	0.20	2	8	2	8	y	1.00	1	0	1	0	n	0.00	0	20	0	20	n	-	-	-	-	-	-	0.00	0	19	0	19	n	-	-	-	-	-	-	0.13	2	13	2	13	y	0.04	1	25	1	25	n	0.00	0	12	0	12	n	0.15	3	17	3	17	y	ENSMUSG00000030161.9	Gabarapl1	chr6	protein_coding	gamma-aminobutyric acid (GABA) A receptor-associated protein-like 1
known_NIR_15439	chr6	129510706	129514454	+	129510499	129514454	A5SS	ENSMUST00000032264.9	known	0.00	2	588	2	588	y	0.00	1	563	1	563	n	0.00	2	414	2	414	y	0.00	1	729	1	729	n	0.00	0	869	0	869	n	0.00	0	231	0	231	n	0.00	0	879	0	879	n	0.00	0	309	0	309	n	0.00	2	729	2	729	y	0.00	1	1115	1	1115	n	0.00	0	788	0	788	n	0.00	3	1197	3	1197	y	ENSMUSG00000030161.9	Gabarapl1	chr6	protein_coding	gamma-aminobutyric acid (GABA) A receptor-associated protein-like 1
known_NIR_15440	chr6	13069959	13070307	+	13070002	13070307	A5SS	ENSMUST00000142211.8	known	0.96	73	3	73	3	y	0.93	43	3	43	3	y	0.97	125	4	125	4	y	0.98	86	2	86	2	y	0.99	158	2	158	2	y	1.00	60	0	60	0	n	1.00	110	0	110	0	n	0.97	59	2	59	2	y	0.96	71	3	71	3	y	0.97	148	5	148	5	y	1.00	58	0	58	0	n	0.98	134	3	134	3	y	ENSMUSG00000029571.15	Tmem106b	chr6	protein_coding	transmembrane protein 106B
known_NIR_15441	chr6	131266410	131270035	-	131266410	131268704	5pMXE	ENSMUST00000173837.6	known	1.00	10	0	10	0	n	0.80	8	2	8	2	y	1.00	11	0	11	0	n	1.00	4	0	4	0	n	0.86	6	1	6	1	n	1.00	6	0	6	0	n	0.93	13	1	13	1	n	1.00	7	0	7	0	n	0.86	6	1	6	1	n	1.00	13	0	13	0	n	1.00	7	0	7	0	n	1.00	10	0	10	0	n	ENSMUSG00000030188.13	Magohb	chr6	protein_coding	mago homolog B, exon junction complex core component
known_NIR_15442	chr6	131347377	131356321	-	131347377;131353143	131352937;131356321	ES	ENSMUST00000032309.13	known	0.87	54	8.0	54	7;9	y	0.89	56	7.0	56	11;3	y	0.83	81	16.5	81	12;21	y	0.90	66	7.0	66	7;7	y	0.87	81	12.5	81	14;11	y	0.83	41	8.5	41	4;13	y	0.79	316	84.0	316	85;83	y	0.84	38	7.5	38	7;8	y	0.88	50	6.5	50	7;6	y	0.87	79	12.0	79	11;13	y	0.86	67	10.5	67	12;9	y	0.89	85	11.0	85	5;17	y	ENSMUSG00000030189.16	Ybx3	chr6	protein_coding	Y box protein 3
known_NIR_15443	chr6	133082568	133084827	+	133082568	133083326	3pMXE	ENSMUST00000186945.3	known	0.62	36	22	36	22	y	0.52	24	22	24	22	y	0.35	11	20	11	20	y	0.65	33	18	33	18	y	0.49	40	42	40	42	y	0.50	12	12	12	12	y	0.43	31	41	31	41	y	0.62	18	11	18	11	y	0.49	17	18	17	18	y	0.49	42	43	42	43	y	0.60	36	24	36	24	y	0.48	37	40	37	40	y	ENSMUSG00000072704.7	Smim10l1	chr6	protein_coding	small integral membrane protein 10 like 1
known_NIR_15444	chr6	133082568;133083493	133083326;133084827	+	133082568	133084827	cassetteExon	ENSMUST00000191462.2	known	0.23	11.0	36	22;0	36	n	0.36	13.5	24	22;5	24	y	0.48	10.0	11	20;0	11	n	0.22	9.5	33	18;1	33	n	0.34	21.0	40	42;0	40	n	0.33	6.0	12	12;0	12	n	0.42	22.5	31	41;4	31	y	0.23	5.5	18	11;0	18	n	0.39	11.0	17	18;4	17	y	0.34	21.5	42	43;0	42	n	0.25	12.0	36	24;0	36	n	0.38	22.5	37	40;5	37	y	ENSMUSG00000072704.7	Smim10l1	chr6	protein_coding	small integral membrane protein 10 like 1
known_NIR_15445	chr6	134013101	134114251	+	134013101	134043270	A3SS&ES	ENSMUST00000111963.8	known	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.08	1	12	1	12	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.14	1	6	1	6	n	0.29	2	5	2	5	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.18	2	9	2	9	y	0.50	3	3	3	3	n	0.00	0	11	0	11	n	ENSMUSG00000030199.17	Etv6	chr6	protein_coding	ets variant 6
known_NIR_15446	chr6	134013101	134114251	+	134013101	134114248	A3SS	ENSMUST00000081028.13	known	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.06	1	16	1	16	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.20	1	4	1	4	n	0.18	2	9	2	9	y	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.20	2	8	2	8	y	0.38	3	5	3	5	n	0.00	0	11	0	11	n	ENSMUSG00000030199.17	Etv6	chr6	protein_coding	ets variant 6
known_NIR_15447	chr6	134013101;134043428	134043270;134114248	+	134013101	134114248	cassetteExon	ENSMUST00000081028.13	known	0.64	3.5	2	5;2	2	n	0.37	3.5	6	3;4	6	y	0.36	9.0	16	12;6	16	y	0.45	2.5	3	3;2	3	n	0.50	9.0	9	9;9	9	y	0.53	4.5	4	6;3	4	y	0.31	4.0	9	5;3	9	y	0.48	6.5	7	5;8	7	y	0.43	3.0	4	2;4	4	y	0.43	6.0	8	9;3	8	y	0.38	3.0	5	3;3	5	y	0.46	9.5	11	11;8	11	y	ENSMUSG00000030199.17	Etv6	chr6	protein_coding	ets variant 6
known_NIR_15448	chr6	134497556	134543606	-	134497556;134519008	134518615;134543606	ES	ENSMUST00000032322.15	known	0.00	0	16.5	0	11;22	n	0.00	0	13.5	0	13;14	n	0.03	1	35.5	1	49;22	n	0.03	1	35.0	1	45;25	n	0.03	1	34.5	1	33;36	n	0.00	0	21.5	0	23;20	n	0.11	3	25.5	3	23;28	y	0.04	1	25.5	1	33;18	n	0.00	0	18.0	0	18;18	n	0.00	0	37.0	0	39;35	n	0.00	0	15.5	0	18;13	n	0.00	0	35.0	0	43;27	n	ENSMUSG00000030201.16	Lrp6	chr6	protein_coding	low density lipoprotein receptor-related protein 6
known_NIR_15449	chr6	134685025	134687007	+	134663084	134687007	A5SS	ENSMUST00000166591.8	known	0.08	2	24	2	24	y	0.00	0	37	0	37	n	0.00	0	36	0	36	n	0.00	0	29	0	29	n	0.00	0	43	0	43	n	0.00	0	23	0	23	n	0.00	0	52	0	52	n	0.00	0	26	0	26	n	0.03	1	30	1	30	n	0.00	0	37	0	37	n	0.00	0	33	0	33	n	0.00	0	35	0	35	n	ENSMUSG00000042992.16	Borcs5	chr6	protein_coding	BLOC-1 related complex subunit 5
known_NIR_15450	chr6	134696014	134697457	-	134695048	134697457	A3SS	ENSMUST00000129433.4	known	0.84	26	5	26	5	y	0.91	21	2	21	2	y	0.99	78	1	78	1	n	0.94	49	3	49	3	y	1.00	39	0	39	0	n	1.00	44	0	44	0	n	0.98	49	1	49	1	n	0.97	29	1	29	1	n	0.92	24	2	24	2	y	1.00	45	0	45	0	n	1.00	25	0	25	0	n	0.86	32	5	32	5	y	ENSMUSG00000030203.18	Dusp16	chr6	protein_coding	dual specificity phosphatase 16
known_NIR_15451	chr6	134702958	134735582	-	134702958;134716938	134716775;134735582	ES	ENSMUST00000129433.4	known	0.05	1	17.5	1	27;8	n	0.00	0	17.0	0	22;12	n	0.00	0	64.5	0	80;49	n	0.00	0	35.0	0	49;21	n	0.00	0	34.5	0	49;20	n	0.00	0	29.0	0	40;18	n	0.06	2	32.5	2	35;30	y	0.04	1	24.0	1	32;16	n	0.00	0	13.0	0	13;13	n	0.00	0	45.5	0	57;34	n	0.00	0	26.5	0	37;16	n	0.05	2	38.0	2	40;36	y	ENSMUSG00000030203.18	Dusp16	chr6	protein_coding	dual specificity phosphatase 16
known_NIR_15452	chr6	134702958	134735582	-	134716938	134735582	3pMXE	ENSMUST00000149776.3	known	0.11	1	8	1	8	n	0.00	0	12	0	12	n	0.00	0	49	0	49	n	0.00	0	21	0	21	n	0.00	0	20	0	20	n	0.00	0	18	0	18	n	0.06	2	30	2	30	y	0.06	1	16	1	16	n	0.00	0	13	0	13	n	0.00	0	34	0	34	n	0.00	0	16	0	16	n	0.05	2	36	2	36	y	ENSMUSG00000030203.18	Dusp16	chr6	protein_coding	dual specificity phosphatase 16
known_NIR_15453	chr6	134716938;134718894	134718781;134735582	-	134716938	134735582	cassetteExon	ENSMUST00000129433.4	known	0.06	0.5	8	0;1	8	n	0.00	0.0	12	0;0	12	n	0.06	3.0	49	3;3	49	y	0.00	0.0	21	0;0	21	n	0.02	0.5	20	1;0	20	n	0.08	1.5	18	1;2	18	n	0.00	0.0	30	0;0	30	n	0.00	0.0	16	0;0	16	n	0.04	0.5	13	0;1	13	n	0.04	1.5	34	2;1	34	n	0.03	0.5	16	1;0	16	n	0.03	1.0	36	2;0	36	n	ENSMUSG00000030203.18	Dusp16	chr6	protein_coding	dual specificity phosphatase 16
known_NIR_15454	chr6	134738397	134768201	-	134738397	134769240	A5SS	ENSMUST00000129433.4	known	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.23	8	27	8	27	y	0.12	2	15	2	15	y	0.14	3	19	3	19	y	0.14	2	12	2	12	y	0.09	2	21	2	21	y	0.07	1	13	1	13	n	0.00	0	10	0	10	n	0.08	2	24	2	24	y	0.00	0	8	0	8	n	0.00	0	20	0	20	n	ENSMUSG00000030203.18	Dusp16	chr6	protein_coding	dual specificity phosphatase 16
known_NIR_15455	chr6	134826263	134829241	+	134826263;134828187	134828043;134829241	ES	ENSMUST00000046303.12	known	0.18	13	58.0	13	59;57	y	0.09	3	29.5	3	29;30	y	0.13	12	79.5	12	92;67	y	0.20	20	80.5	20	90;71	y	0.11	11	92.0	11	87;97	y	0.16	8	42.5	8	52;33	y	0.09	7	68.0	7	72;64	y	0.17	8	39.5	8	33;46	y	0.25	12	36.5	12	39;34	y	0.19	22	95.5	22	102;89	y	0.16	12	61.0	12	66;56	y	0.13	11	71.0	11	75;67	y	ENSMUSG00000032652.14	Crebl2	chr6	protein_coding	cAMP responsive element binding protein-like 2
known_NIR_15456	chr6	134826263	134829241	+	134828187	134829241	5pMXE	ENSMUST00000203742.2	known	0.19	13	57	13	57	y	0.09	3	30	3	30	y	0.15	12	67	12	67	y	0.22	20	71	20	71	y	0.10	11	97	11	97	y	0.20	8	33	8	33	y	0.10	7	64	7	64	y	0.15	8	46	8	46	y	0.26	12	34	12	34	y	0.20	22	89	22	89	y	0.18	12	56	12	56	y	0.14	11	67	11	67	y	ENSMUSG00000032652.14	Crebl2	chr6	protein_coding	cAMP responsive element binding protein-like 2
known_NIR_15457	chr6	134847406	134864593	-	134854297	134864593	A3SS&ES	ENSMUST00000066107.10	known	1.00	3	0	3	0	n	1.00	5	0	5	0	n	1.00	2	0	2	0	n	0.67	8	4	8	4	y	1.00	4	0	4	0	n	0.83	5	1	5	1	n	1.00	3	0	3	0	n	1.00	1	0	1	0	n	0.86	6	1	6	1	n	0.87	13	2	13	2	y	0.80	8	2	8	2	y	0.60	3	2	3	2	n	ENSMUSG00000032641.19	Gpr19	chr6	protein_coding	G protein-coupled receptor 19
known_NIR_15458	chr6	134847445	134864593	-	134847406	134864593	A3SS	ENSMUST00000165392.8	known	0.57	4	3	4	3	n	0.58	7	5	7	5	y	0.50	2	2	2	2	n	0.27	3	8	3	8	y	0.50	4	4	4	4	n	0.17	1	5	1	5	n	0.62	5	3	5	3	n	0.75	3	1	3	1	n	0.33	3	6	3	6	n	0.24	4	13	4	13	y	0.27	3	8	3	8	y	0.57	4	3	4	3	n	ENSMUSG00000032641.19	Gpr19	chr6	protein_coding	G protein-coupled receptor 19
known_NIR_15459	chr6	134864748	134873821	-	134864748	134874125	A5SS	ENSMUST00000165392.8	known	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.13	2	13	2	13	y	0.50	2	2	2	2	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.22	2	7	2	7	n	0.22	2	7	2	7	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	ENSMUSG00000032641.19	Gpr19	chr6	protein_coding	G protein-coupled receptor 19
known_NIR_15460	chr6	134874176	134875272	-	134874176	134874795	5pMXE	ENSMUST00000116515.9	known	0.22	2	7	2	7	n	0.33	2	4	2	4	n	0.00	0	4	0	4	n	0.43	6	8	6	8	y	0.25	4	12	4	12	y	0.33	2	4	2	4	n	0.12	1	7	1	7	n	0.14	1	6	1	6	n	0.43	3	4	3	4	n	0.00	0	8	0	8	n	0.17	1	5	1	5	n	0.20	2	8	2	8	y	ENSMUSG00000032641.19	Gpr19	chr6	protein_coding	G protein-coupled receptor 19
known_NIR_15461	chr6	134993257	134993545	+	134992903	134993545	A5SS	ENSMUST00000032326.11	known	0.00	0	71	0	71	n	0.02	1	46	1	46	n	0.00	0	93	0	93	n	0.00	0	84	0	84	n	0.00	0	93	0	93	n	0.00	0	34	0	34	n	0.00	0	85	0	85	n	0.02	1	47	1	47	n	0.00	0	78	0	78	n	0.00	0	93	0	93	n	0.03	2	74	2	74	y	0.00	0	104	0	104	n	ENSMUSG00000030204.11	Ddx47	chr6	protein_coding	DEAD box helicase 47
known_NIR_15462	chr6	135132287	135145136	-	135132287	135145018	A5SS	ENSMUST00000045855.9	known	0.00	4	939	4	939	y	0.00	0	991	0	991	n	0.01	3	283	3	283	y	0.00	3	1051	3	1051	y	0.01	8	1175	8	1175	y	0.01	4	274	4	274	y	0.01	8	1035	8	1035	y	0.00	2	483	2	483	y	0.00	3	934	3	934	y	0.00	5	1378	5	1378	y	0.01	6	1029	6	1029	y	0.00	4	1041	4	1041	y	ENSMUSG00000042770.9	Hebp1	chr6	protein_coding	heme binding protein 1
known_NIR_15463	chr6	135175215	135186031	+	135175099	135186031	A5SS	ENSMUST00000111915.8	known	0.00	0	23	0	23	n	0.00	0	22	0	22	n	0.00	0	63	0	63	n	0.00	0	52	0	52	n	0.00	0	92	0	92	n	0.02	1	51	1	51	n	0.00	0	36	0	36	n	0.05	5	88	5	88	y	0.04	1	25	1	25	n	0.00	0	35	0	35	n	0.00	0	25	0	25	n	0.00	0	18	0	18	n	ENSMUSG00000030207.16	Fam234b	chr6	protein_coding	family with sequence similarity 234, member B
known_NIR_15464	chr6	13595085	13602237	-	13595085	13607829	A5SS	ENSMUST00000149123.3	known	1.00	20	0	20	0	n	1.00	9	0	9	0	n	0.94	30	2	30	2	y	0.96	25	1	25	1	n	1.00	41	0	41	0	n	1.00	25	0	25	0	n	1.00	23	0	23	0	n	1.00	24	0	24	0	n	1.00	9	0	9	0	n	0.96	26	1	26	1	n	1.00	24	0	24	0	n	1.00	29	0	29	0	n	ENSMUSG00000029569.10	Tmem168	chr6	protein_coding	transmembrane protein 168
known_NIR_15465	chr6	13595085	13607829	-	13595085;13603486	13602237;13607829	ES	ENSMUST00000031554.9	known	0.00	0	16.0	0	20;12	n	0.00	0	4.5	0	9;0	n	0.09	2	21.5	2	30;13	y	0.06	1	17.0	1	25;9	n	0.00	0	26.0	0	41;11	n	0.00	0	18.0	0	25;11	n	0.00	0	16.5	0	23;10	n	0.00	0	14.5	0	24;5	n	0.00	0	7.0	0	9;5	n	0.05	1	21.0	1	26;16	n	0.00	0	18.0	0	24;12	n	0.00	0	19.0	0	29;9	n	ENSMUSG00000029569.10	Tmem168	chr6	protein_coding	transmembrane protein 168
known_NIR_15466	chr6	13603486	13607829	-	13595085	13607829	A3SS	ENSMUST00000149123.3	known	1.00	12	0	12	0	n	-	-	-	-	-	-	0.87	13	2	13	2	y	0.90	9	1	9	1	n	1.00	11	0	11	0	n	1.00	11	0	11	0	n	1.00	10	0	10	0	n	1.00	5	0	5	0	n	1.00	5	0	5	0	n	0.94	16	1	16	1	n	1.00	12	0	12	0	n	1.00	9	0	9	0	n	ENSMUSG00000029569.10	Tmem168	chr6	protein_coding	transmembrane protein 168
known_NIR_15467	chr6	13607083	13607829	-	13603486	13607829	A3SS	ENSMUST00000031554.9	known	0.14	2	12	2	12	y	-	-	-	-	-	-	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.27	4	11	4	11	y	0.08	1	11	1	11	n	0.09	1	10	1	10	n	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.06	1	16	1	16	n	0.08	1	12	1	12	n	0.00	0	9	0	9	n	ENSMUSG00000029569.10	Tmem168	chr6	protein_coding	transmembrane protein 168
known_NIR_15468	chr6	136495961	136536762	+	136495961	136540758	A3SS	ENSMUST00000186577.7	known	1.00	5	0	5	0	n	1.00	2	0	2	0	n	1.00	12	0	12	0	n	1.00	9	0	9	0	n	0.88	14	2	14	2	y	0.75	3	1	3	1	n	1.00	15	0	15	0	n	1.00	21	0	21	0	n	0.83	5	1	5	1	n	1.00	11	0	11	0	n	-	-	-	-	-	-	0.85	11	2	11	2	y	ENSMUSG00000030213.13	Atf7ip	chr6	protein_coding	activating transcription factor 7 interacting protein
known_NIR_15469	chr6	136495961	136540758	+	136495961;136538437	136536762;136540758	ES	ENSMUST00000032335.13	known	0.00	0	4.0	0	5;3	n	0.00	0	4.0	0	2;6	n	0.00	0	20.0	0	12;28	n	0.00	0	13.0	0	9;17	n	0.11	2	15.5	2	14;17	y	0.22	1	3.5	1	3;4	n	0.00	0	18.0	0	15;21	n	0.00	0	22.5	0	21;24	n	0.11	1	8.5	1	5;12	n	0.00	0	15.0	0	11;19	n	0.00	0	5.0	0	0;10	n	0.12	2	14.0	2	11;17	y	ENSMUSG00000030213.13	Atf7ip	chr6	protein_coding	activating transcription factor 7 interacting protein
known_NIR_15470	chr6	136538437	136540758	+	136495961	136540758	A5SS	ENSMUST00000186577.7	known	1.00	3	0	3	0	n	1.00	6	0	6	0	n	1.00	28	0	28	0	n	1.00	17	0	17	0	n	0.89	17	2	17	2	y	0.80	4	1	4	1	n	1.00	21	0	21	0	n	1.00	24	0	24	0	n	0.92	12	1	12	1	n	1.00	19	0	19	0	n	1.00	10	0	10	0	n	0.89	17	2	17	2	y	ENSMUSG00000030213.13	Atf7ip	chr6	protein_coding	activating transcription factor 7 interacting protein
known_NIR_15471	chr6	136540835	136542015	+	136540844	136542015	A5SS	ENSMUST00000203988.3	known	1.00	4	0	4	0	n	0.42	5	7	5	7	y	1.00	25	0	25	0	n	0.62	13	8	13	8	y	0.84	16	3	16	3	y	0.78	14	4	14	4	y	0.74	17	6	17	6	y	0.69	9	4	9	4	y	0.78	14	4	14	4	y	0.91	20	2	20	2	y	0.85	11	2	11	2	y	1.00	16	0	16	0	n	ENSMUSG00000030213.13	Atf7ip	chr6	protein_coding	activating transcription factor 7 interacting protein
known_NIR_15472	chr6	136909341	136918811	-	136909341;136910771	136910582;136918811	ES	ENSMUST00000111891.4	known	0.00	0	20.0	0	38;2	n	0.18	2	9.0	2	18;0	n	0.03	1	28.0	1	53;3	n	0.00	0	10.0	0	19;1	n	0.07	2	28.5	2	54;3	y	0.00	0	14.5	0	27;2	n	0.00	0	34.5	0	64;5	n	0.00	0	14.5	0	28;1	n	0.00	0	7.5	0	15;0	n	0.00	0	8.5	0	15;2	n	0.00	0	13.0	0	25;1	n	0.00	0	11.5	0	21;2	n	ENSMUSG00000030220.14	Arhgdib	chr6	protein_coding	Rho, GDP dissociation inhibitor (GDI) beta
known_NIR_15473	chr6	136910771	136911865	-	136910771	136918649	A5SS	ENSMUST00000032344.12	known	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.10	2	19	2	19	y	0.00	0	10	0	10	n	0.00	0	24	0	24	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	ENSMUSG00000030220.14	Arhgdib	chr6	protein_coding	Rho, GDP dissociation inhibitor (GDI) beta
known_NIR_15474	chr6	136910771	136918649	-	136910771	136918436	5pMXE	ENSMUST00000111892.8	known	0.80	8	2	8	2	y	1.00	9	0	9	0	n	0.90	19	2	19	2	y	1.00	10	0	10	0	n	0.92	24	2	24	2	y	1.00	8	0	8	0	n	0.93	14	1	14	1	n	0.90	9	1	9	1	n	0.75	6	2	6	2	n	0.75	6	2	6	2	n	0.69	11	5	11	5	y	0.90	9	1	9	1	n	ENSMUSG00000030220.14	Arhgdib	chr6	protein_coding	Rho, GDP dissociation inhibitor (GDI) beta
known_NIR_15475	chr6	136910771	136918811	-	136910771	136918649	5pMXE	ENSMUST00000032344.12	known	0.20	2	8	2	8	y	0.00	0	9	0	9	n	0.14	3	19	3	19	y	0.09	1	10	1	10	n	0.11	3	24	3	24	y	0.20	2	8	2	8	y	0.26	5	14	5	14	y	0.10	1	9	1	9	n	0.00	0	6	0	6	n	0.25	2	6	2	6	n	0.08	1	11	1	11	n	0.18	2	9	2	9	y	ENSMUSG00000030220.14	Arhgdib	chr6	protein_coding	Rho, GDP dissociation inhibitor (GDI) beta
known_NIR_15476	chr6	136936392	136940191	+	136936392;136938203	136938163;136940191	ES	ENSMUST00000204627.3	known	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3.5	0	5;2	n	0.00	0	1.5	0	2;1	n	0.33	1	2.0	1	2;2	n	0.35	3	5.5	3	4;7	y	0.00	0	0.5	0	1;0	n	0.25	1	3.0	1	1;5	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000064330.10	Pde6h	chr6	protein_coding	phosphodiesterase 6H, cGMP-specific, cone, gamma
known_NIR_15477	chr6	136936392	136940191	+	136938203	136940191	A5SS	ENSMUST00000057650.6	known	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.30	3	7	3	7	y	-	-	-	-	-	-	0.17	1	5	1	5	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000064330.10	Pde6h	chr6	protein_coding	phosphodiesterase 6H, cGMP-specific, cone, gamma
known_NIR_15478	chr6	137731636	137755122	+	137731636	137737738	3pMXE	ENSMUST00000204100.3	known	1.00	100	0	100	0	n	0.99	110	1	110	1	n	0.95	70	4	70	4	y	1.00	188	0	188	0	n	0.99	113	1	113	1	n	0.98	53	1	53	1	n	0.98	137	3	137	3	y	0.91	58	6	58	6	y	1.00	110	0	110	0	n	0.98	170	4	170	4	y	0.95	102	5	102	5	y	0.97	161	5	161	5	y	ENSMUSG00000030225.12	Dera	chr6	protein_coding	deoxyribose-phosphate aldolase (putative)
known_NIR_15479	chr6	137760061	137807191	+	137760061;137773880	137773752;137807191	ES	ENSMUST00000087675.9	known	0.01	1	144.5	1	170;119	n	0.02	3	138.0	3	158;118	y	0.01	1	88.0	1	101;75	n	0.00	0	163.0	0	190;136	n	0.02	3	183.0	3	225;141	y	0.00	0	60.5	0	77;44	n	0.02	3	189.0	3	219;159	y	0.00	0	84.5	0	100;69	n	0.00	0	141.0	0	169;113	n	0.02	5	218.5	5	265;172	y	0.01	2	175.0	2	185;165	y	0.00	0	204.0	0	241;167	n	ENSMUSG00000030225.12	Dera	chr6	protein_coding	deoxyribose-phosphate aldolase (putative)
known_NIR_15480	chr6	137994718	137994920	-	137989192	137994920	A3SS	ENSMUST00000111873.8	known	1.00	10	0	10	0	n	1.00	9	0	9	0	n	0.93	14	1	14	1	n	1.00	17	0	17	0	n	0.92	12	1	12	1	n	1.00	6	0	6	0	n	1.00	16	0	16	0	n	1.00	7	0	7	0	n	0.85	17	3	17	3	y	1.00	29	0	29	0	n	1.00	19	0	19	0	n	0.93	13	1	13	1	n	ENSMUSG00000044378.13	Slc15a5	chr6	protein_coding	solute carrier family 15, member 5
known_NIR_15481	chr6	138117604	138127766	+	138117604;138124813	138124657;138127766	ES	ENSMUST00000008684.11	known	0.00	0	12800.5	0	7721;17880	n	0.00	2	11946.0	2	7291;16601	y	0.00	0	15282.5	0	9562;21003	n	0.00	2	14339.5	2	9292;19387	y	0.00	0	16974.5	0	10021;23928	n	0.00	0	7759.5	0	4495;11024	n	0.00	0	17508.5	0	10673;24344	n	0.00	0	7854.0	0	4763;10945	n	0.00	3	12745.5	3	8335;17156	y	0.00	3	19696.5	3	12096;27297	y	0.00	4	14029.5	4	8434;19625	y	0.00	0	13806.5	0	8601;19012	n	ENSMUSG00000008540.12	Mgst1	chr6	protein_coding	microsomal glutathione S-transferase 1
known_NIR_15482	chr6	138117604	138127766	+	138124813	138127766	A5SS&ES	ENSMUST00000120302.8	known	0.00	0	17880	0	17880	n	0.00	2	16601	2	16601	y	0.00	0	21003	0	21003	n	0.00	2	19387	2	19387	y	0.00	0	23928	0	23928	n	0.00	0	11024	0	11024	n	0.00	0	24344	0	24344	n	0.00	0	10945	0	10945	n	0.00	3	17156	3	17156	y	0.00	3	27297	3	27297	y	0.00	4	19625	4	19625	y	0.00	0	19012	0	19012	n	ENSMUSG00000008540.12	Mgst1	chr6	protein_coding	microsomal glutathione S-transferase 1
known_NIR_15483	chr6	138117604;138127860	138127766;138133130	+	138117604;138124813	138124657;138133130	MXE	ENSMUST00000204628.3	known	0.71	9299.5	3862.5	0;18599	7721;4	n	0.71	9059.0	3650.5	2;18116	7291;10	y	0.69	10898.5	4784.5	0;21797	9562;7	n	0.68	9710.5	4648.0	2;19419	9292;4	y	0.71	12383.0	5012.0	0;24766	10021;3	n	0.73	6000.5	2249.5	0;12001	4495;4	n	0.71	12825.5	5340.5	0;25651	10673;8	n	0.70	5696.5	2384.0	0;11393	4763;5	n	0.68	8884.5	4167.5	3;17766	8335;0	n	0.71	14471.0	6048.0	3;28939	12096;0	n	0.72	10706.5	4219.0	4;21409	8434;4	y	0.70	9978.5	4304.0	0;19957	8601;7	n	ENSMUSG00000008540.12	Mgst1	chr6	protein_coding	microsomal glutathione S-transferase 1
known_NIR_15484	chr6	138117650	138124657	+	138117604	138124657	A5SS	ENSMUST00000008684.11	known	0.00	3	7721	3	7721	y	0.00	2	7291	2	7291	y	0.00	6	9562	6	9562	y	0.00	3	9292	3	9292	y	0.00	5	10021	5	10021	y	0.00	2	4495	2	4495	y	0.00	5	10673	5	10673	y	0.00	2	4763	2	4763	y	0.00	6	8335	6	8335	y	0.00	3	12096	3	12096	y	0.00	1	8434	1	8434	n	0.00	4	8601	4	8601	y	ENSMUSG00000008540.12	Mgst1	chr6	protein_coding	microsomal glutathione S-transferase 1
known_NIR_15485	chr6	138118714	138124657	+	138117604	138124657	A5SS	ENSMUST00000008684.11	known	0.00	34	7721	34	7721	y	0.00	27	7291	27	7291	y	0.00	26	9562	26	9562	y	0.00	36	9292	36	9292	y	0.00	35	10021	35	10021	y	0.00	17	4495	17	4495	y	0.01	58	10673	58	10673	y	0.00	15	4763	15	4763	y	0.00	40	8335	40	8335	y	0.00	52	12096	52	12096	y	0.00	35	8434	35	8434	y	0.00	26	8601	26	8601	y	ENSMUSG00000008540.12	Mgst1	chr6	protein_coding	microsomal glutathione S-transferase 1
known_NIR_15486	chr6	138118714	138124657	+	138117650	138124657	A5SS	ENSMUST00000120302.8	known	0.92	34	3	34	3	y	0.93	27	2	27	2	y	0.81	26	6	26	6	y	0.92	36	3	36	3	y	0.88	35	5	35	5	y	0.89	17	2	17	2	y	0.92	58	5	58	5	y	0.88	15	2	15	2	y	0.87	40	6	40	6	y	0.95	52	3	52	3	y	0.97	35	1	35	1	n	0.87	26	4	26	4	y	ENSMUSG00000008540.12	Mgst1	chr6	protein_coding	microsomal glutathione S-transferase 1
known_NIR_15487	chr6	138118880	138124657	+	138117604	138124657	A5SS	ENSMUST00000008684.11	known	0.03	202	7721	202	7721	y	0.02	167	7291	167	7291	y	0.02	219	9562	219	9562	y	0.02	215	9292	215	9292	y	0.02	172	10021	172	10021	y	0.02	77	4495	77	4495	y	0.02	241	10673	241	10673	y	0.01	72	4763	72	4763	y	0.02	206	8335	206	8335	y	0.02	264	12096	264	12096	y	0.03	240	8434	240	8434	y	0.03	236	8601	236	8601	y	ENSMUSG00000008540.12	Mgst1	chr6	protein_coding	microsomal glutathione S-transferase 1
known_NIR_15488	chr6	138118880	138124657	+	138117650	138124657	A5SS	ENSMUST00000120302.8	known	0.99	202	3	202	3	y	0.99	167	2	167	2	y	0.97	219	6	219	6	y	0.99	215	3	215	3	y	0.97	172	5	172	5	y	0.97	77	2	77	2	y	0.98	241	5	241	5	y	0.97	72	2	72	2	y	0.97	206	6	206	6	y	0.99	264	3	264	3	y	1.00	240	1	240	1	n	0.98	236	4	236	4	y	ENSMUSG00000008540.12	Mgst1	chr6	protein_coding	microsomal glutathione S-transferase 1
known_NIR_15489	chr6	138118880	138124657	+	138118714	138124657	A5SS	ENSMUST00000120230.8	known	0.86	202	34	202	34	y	0.86	167	27	167	27	y	0.89	219	26	219	26	y	0.86	215	36	215	36	y	0.83	172	35	172	35	y	0.82	77	17	77	17	y	0.81	241	58	241	58	y	0.83	72	15	72	15	y	0.84	206	40	206	40	y	0.84	264	52	264	52	y	0.87	240	35	240	35	y	0.90	236	26	236	26	y	ENSMUSG00000008540.12	Mgst1	chr6	protein_coding	microsomal glutathione S-transferase 1
known_NIR_15490	chr6	138120030	138124657	+	138117604	138124657	A5SS	ENSMUST00000008684.11	known	0.02	119	7721	119	7721	y	0.02	122	7291	122	7291	y	0.01	133	9562	133	9562	y	0.01	116	9292	116	9292	y	0.02	163	10021	163	10021	y	0.02	80	4495	80	4495	y	0.01	147	10673	147	10673	y	0.02	91	4763	91	4763	y	0.01	99	8335	99	8335	y	0.01	174	12096	174	12096	y	0.02	138	8434	138	8434	y	0.01	118	8601	118	8601	y	ENSMUSG00000008540.12	Mgst1	chr6	protein_coding	microsomal glutathione S-transferase 1
known_NIR_15491	chr6	138120030	138124657	+	138117650	138124657	A5SS	ENSMUST00000120302.8	known	0.98	119	3	119	3	y	0.98	122	2	122	2	y	0.96	133	6	133	6	y	0.97	116	3	116	3	y	0.97	163	5	163	5	y	0.98	80	2	80	2	y	0.97	147	5	147	5	y	0.98	91	2	91	2	y	0.94	99	6	99	6	y	0.98	174	3	174	3	y	0.99	138	1	138	1	n	0.97	118	4	118	4	y	ENSMUSG00000008540.12	Mgst1	chr6	protein_coding	microsomal glutathione S-transferase 1
known_NIR_15492	chr6	138120030	138124657	+	138118714	138124657	A5SS	ENSMUST00000120230.8	known	0.78	119	34	119	34	y	0.82	122	27	122	27	y	0.84	133	26	133	26	y	0.76	116	36	116	36	y	0.82	163	35	163	35	y	0.82	80	17	80	17	y	0.72	147	58	147	58	y	0.86	91	15	91	15	y	0.71	99	40	99	40	y	0.77	174	52	174	52	y	0.80	138	35	138	35	y	0.82	118	26	118	26	y	ENSMUSG00000008540.12	Mgst1	chr6	protein_coding	microsomal glutathione S-transferase 1
known_NIR_15493	chr6	138120030	138124657	+	138118880	138124657	A5SS	ENSMUST00000118091.8	known	0.37	119	202	119	202	y	0.42	122	167	122	167	y	0.38	133	219	133	219	y	0.35	116	215	116	215	y	0.49	163	172	163	172	y	0.51	80	77	80	77	y	0.38	147	241	147	241	y	0.56	91	72	91	72	y	0.32	99	206	99	206	y	0.40	174	264	174	264	y	0.37	138	240	138	240	y	0.33	118	236	118	236	y	ENSMUSG00000008540.12	Mgst1	chr6	protein_coding	microsomal glutathione S-transferase 1
known_NIR_15494	chr6	138124813	138133130	+	138124813	138127766	3pMXE	ENSMUST00000125810.2	known	0.00	4	17880	4	17880	y	0.00	10	16601	10	16601	y	0.00	7	21003	7	21003	y	0.00	4	19387	4	19387	y	0.00	3	23928	3	23928	y	0.00	4	11024	4	11024	y	0.00	8	24344	8	24344	y	0.00	5	10945	5	10945	y	0.00	0	17156	0	17156	n	0.00	0	27297	0	27297	n	0.00	4	19625	4	19625	y	0.00	7	19012	7	19012	y	ENSMUSG00000008540.12	Mgst1	chr6	protein_coding	microsomal glutathione S-transferase 1
known_NIR_15495	chr6	138124813	138133130	+	138124813;138127860	138127766;138133130	ES	ENSMUST00000008684.11	known	0.00	4	18239.5	4	17880;18599	y	0.00	10	17358.5	10	16601;18116	y	0.00	7	21400.0	7	21003;21797	y	0.00	4	19403.0	4	19387;19419	y	0.00	3	24347.0	3	23928;24766	y	0.00	4	11512.5	4	11024;12001	y	0.00	8	24997.5	8	24344;25651	y	0.00	5	11169.0	5	10945;11393	y	0.00	0	17461.0	0	17156;17766	n	0.00	0	28118.0	0	27297;28939	n	0.00	4	20517.0	4	19625;21409	y	0.00	7	19484.5	7	19012;19957	y	ENSMUSG00000008540.12	Mgst1	chr6	protein_coding	microsomal glutathione S-transferase 1
known_NIR_15496	chr6	138127860;138130601	138130494;138133130	+	138127860	138133130	cassetteExon	ENSMUST00000008684.11	known	0.00	22.0	18599	31;13	18599	y	0.00	24.5	18116	27;22	18116	y	0.00	40.0	21797	41;39	21797	y	0.00	33.5	19419	33;34	19419	y	0.00	28.0	24766	35;21	24766	y	0.00	24.5	12001	32;17	12001	y	0.00	33.0	25651	35;31	25651	y	0.00	17.0	11393	21;13	11393	y	0.00	24.0	17766	28;20	17766	y	0.00	36.5	28939	50;23	28939	y	0.00	26.5	21409	31;22	21409	y	0.00	28.5	19957	36;21	19957	y	ENSMUSG00000008540.12	Mgst1	chr6	protein_coding	microsomal glutathione S-transferase 1
known_NIR_15497	chr6	138130601	138133130	+	138124813	138133130	A5SS	ENSMUST00000204628.3	known	0.76	13	4	13	4	y	0.69	22	10	22	10	y	0.85	39	7	39	7	y	0.89	34	4	34	4	y	0.88	21	3	21	3	y	0.81	17	4	17	4	y	0.79	31	8	31	8	y	0.72	13	5	13	5	y	1.00	20	0	20	0	n	1.00	23	0	23	0	n	0.85	22	4	22	4	y	0.75	21	7	21	7	y	ENSMUSG00000008540.12	Mgst1	chr6	protein_coding	microsomal glutathione S-transferase 1
known_NIR_15498	chr6	13870739	13871438	-	13870739;13871145	13871055;13871438	ES	ENSMUST00000139231.2	known	0.02	1	57.0	1	91;23	n	0.04	2	45.0	2	62;28	y	0.00	0	60.0	0	96;24	n	0.00	0	47.5	0	79;16	n	0.00	0	76.0	0	114;38	n	0.00	0	34.0	0	58;10	n	0.00	0	65.0	0	104;26	n	0.00	0	37.0	0	64;10	n	0.00	0	28.0	0	44;12	n	0.02	1	64.0	1	95;33	n	0.00	0	39.5	0	61;18	n	0.02	1	51.0	1	78;24	n	ENSMUSG00000052419.8	2610001J05Rik	chr6	protein_coding	RIKEN cDNA 2610001J05 gene
known_NIR_15499	chr6	13881380	13895091	+	13881380	14044193	A3SS	ENSMUST00000181090.8	known	0.86	12	2	12	2	y	1.00	9	0	9	0	n	1.00	13	0	13	0	n	1.00	7	0	7	0	n	1.00	13	0	13	0	n	1.00	5	0	5	0	n	1.00	18	0	18	0	n	1.00	12	0	12	0	n	1.00	4	0	4	0	n	0.91	10	1	10	1	n	1.00	12	0	12	0	n	1.00	16	0	16	0	n	ENSMUSG00000097616.8	1110019D14Rik	chr6	lncRNA	RIKEN cDNA 1110019D14 gene
known_NIR_15500	chr6	139610789	139626127	+	139610789	139612567	3pMXE	ENSMUST00000190962.7	known	0.17	1	5	1	5	n	0.67	2	1	2	1	n	0.54	7	6	7	6	y	0.60	3	2	3	2	n	0.12	1	7	1	7	n	0.40	2	3	2	3	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	4	2	4	2	n	0.33	1	2	1	2	n	0.50	3	3	3	3	n	ENSMUSG00000030228.20	Pik3c2g	chr6	protein_coding	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma
known_NIR_15501	chr6	140481086	140482374	+	140480288	140482374	A5SS	ENSMUST00000087622.6	known	0.29	7	17	7	17	y	0.29	6	15	6	15	y	0.24	5	16	5	16	y	0.14	4	25	4	25	y	0.17	6	30	6	30	y	0.07	1	13	1	13	n	0.19	5	21	5	21	y	0.05	1	18	1	18	n	0.30	8	19	8	19	y	0.17	6	30	6	30	y	0.39	9	14	9	14	y	0.00	0	30	0	30	n	ENSMUSG00000030231.12	Plekha5	chr6	protein_coding	pleckstrin homology domain containing, family A member 5
known_NIR_15502	chr6	140482489	140489446	+	140482489;140482749	140482732;140489446	ES	ENSMUST00000087622.6	known	0.95	28	1.5	28	1;2	n	0.85	17	3.0	17	3;3	y	0.92	30	2.5	30	3;2	y	0.96	26	1.0	26	1;1	n	1.00	37	0.0	37	0;0	n	0.94	23	1.5	23	1;2	n	0.91	20	2.0	20	2;2	y	0.89	17	2.0	17	2;2	y	0.95	28	1.5	28	2;1	n	0.96	44	2.0	44	2;2	y	1.00	30	0.0	30	0;0	n	0.92	35	3.0	35	3;3	y	ENSMUSG00000030231.12	Plekha5	chr6	protein_coding	pleckstrin homology domain containing, family A member 5
known_NIR_15503	chr6	140523064	140525153	+	140523064	140525156	A3SS	ENSMUST00000087622.6	known	0.05	1	18	1	18	n	0.10	3	27	3	27	y	0.18	6	27	6	27	y	0.08	3	35	3	35	y	0.17	7	33	7	33	y	0.13	4	27	4	27	y	0.09	5	52	5	52	y	0.06	1	15	1	15	n	0.21	8	30	8	30	y	0.09	4	40	4	40	y	0.12	4	30	4	30	y	0.08	5	55	5	55	y	ENSMUSG00000030231.12	Plekha5	chr6	protein_coding	pleckstrin homology domain containing, family A member 5
known_NIR_15504	chr6	140537490	140541975	+	140537490	140539281	A3SS	ENSMUST00000087622.6	known	0.26	9	25	9	25	y	0.17	6	30	6	30	y	0.12	3	22	3	22	y	0.17	7	33	7	33	y	0.19	10	43	10	43	y	0.17	4	19	4	19	y	0.12	5	37	5	37	y	0.32	6	13	6	13	y	0.11	4	34	4	34	y	0.33	15	30	15	30	y	0.32	15	32	15	32	y	0.17	8	38	8	38	y	ENSMUSG00000030231.12	Plekha5	chr6	protein_coding	pleckstrin homology domain containing, family A member 5
known_NIR_15505	chr6	140537490	140541975	+	140537490;140539383	140539281;140541975	ES	ENSMUST00000205255.3	known	0.25	9	27.0	9	25;29	y	0.16	6	32.0	6	30;34	y	0.14	3	18.0	3	22;14	y	0.18	7	31.5	7	33;30	y	0.21	10	37.5	10	43;32	y	0.23	4	13.5	4	19;8	y	0.13	5	33.5	5	37;30	y	0.29	6	15.0	6	13;17	y	0.12	4	29.5	4	34;25	y	0.35	15	28.0	15	30;26	y	0.29	15	37.5	15	32;43	y	0.20	8	31.5	8	38;25	y	ENSMUSG00000030231.12	Plekha5	chr6	protein_coding	pleckstrin homology domain containing, family A member 5
known_NIR_15506	chr6	140596508	140597042	+	140596508	140623117	A3SS	ENSMUST00000095350.11	known	1.00	31	0	31	0	n	1.00	10	0	10	0	n	1.00	48	0	48	0	n	0.92	22	2	22	2	y	1.00	30	0	30	0	n	0.94	15	1	15	1	n	1.00	31	0	31	0	n	1.00	16	0	16	0	n	1.00	13	0	13	0	n	0.97	28	1	28	1	n	1.00	14	0	14	0	n	0.88	23	3	23	3	y	ENSMUSG00000030232.19	Aebp2	chr6	protein_coding	AE binding protein 2
known_NIR_15507	chr6	140596508	140599484	+	140596508	140597042	3pMXE	ENSMUST00000160836.8	known	0.11	4	31	4	31	y	0.29	4	10	4	10	y	0.26	17	48	17	48	y	0.12	3	22	3	22	y	0.09	3	30	3	30	y	0.12	2	15	2	15	y	0.16	6	31	6	31	y	0.16	3	16	3	16	y	0.13	2	13	2	13	y	0.10	3	28	3	28	y	0.18	3	14	3	14	y	0.12	3	23	3	23	y	ENSMUSG00000030232.19	Aebp2	chr6	protein_coding	AE binding protein 2
known_NIR_15508	chr6	142330302	142332445	-	142330302	142332748	A5SS	ENSMUST00000032370.13	known	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.15	2	11	2	11	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.67	4	2	4	2	n	0.11	1	8	1	8	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.11	1	8	1	8	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000030243.17	Recql	chr6	protein_coding	RecQ protein-like
known_NIR_15509	chr6	142368557	142369247	-	142368557	142369120	A5SS	ENSMUST00000032371.8	known	0.19	63	264	63	264	y	0.20	90	352	90	352	y	0.13	27	187	27	187	y	0.23	85	290	85	290	y	0.15	49	273	49	273	y	0.16	21	110	21	110	y	0.16	77	391	77	391	y	0.20	31	124	31	124	y	0.17	51	248	51	248	y	0.15	85	464	85	464	y	0.21	101	391	101	391	y	0.21	126	465	126	465	y	ENSMUSG00000030244.8	Gys2	chr6	protein_coding	glycogen synthase 2
known_NIR_15510	chr6	142436330	142439826	-	142436330;142438342	142438219;142439826	ES	ENSMUST00000239395.2	known	0.00	0	1.5	0	0;3	n	0.00	0	3.0	0	2;4	n	0.46	3	3.5	3	6;1	n	0.00	0	4.0	0	4;4	n	0.13	1	6.5	1	5;8	n	0.00	0	0.5	0	1;0	n	0.05	6	109.5	6	105;114	y	0.00	0	1.0	0	2;0	n	0.00	0	5.0	0	1;9	n	0.00	0	4.5	0	6;3	n	0.00	0	7.5	0	10;5	n	0.00	0	2.5	0	2;3	n	ENSMUSG00000030246.13	Ldhb	chr6	protein_coding	lactate dehydrogenase B
known_NIR_15511	chr6	142512197	142515732	-	142512231	142515732	A3SS	ENSMUST00000203945.3	known	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	41	0	41	n	0.00	0	1	0	1	n	0.00	0	12	0	12	n	0.17	2	10	2	10	y	0.00	0	12	0	12	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.17	1	5	1	5	n	0.00	0	5	0	5	n	ENSMUSG00000030247.10	Kcnj8	chr6	protein_coding	potassium inwardly-rectifying channel, subfamily J, member 8
known_NIR_15512	chr6	142536229	142540435	-	142539868	142540435	3pMXE	ENSMUST00000205202.3	known	1.00	11	0	11	0	n	1.00	9	0	9	0	n	1.00	25	0	25	0	n	1.00	4	0	4	0	n	1.00	18	0	18	0	n	1.00	11	0	11	0	n	0.70	16	7	16	7	y	1.00	8	0	8	0	n	1.00	5	0	5	0	n	1.00	9	0	9	0	n	1.00	11	0	11	0	n	1.00	20	0	20	0	n	ENSMUSG00000030249.16	Abcc9	chr6	protein_coding	ATP-binding cassette, sub-family C (CFTR/MRP), member 9
known_NIR_15513	chr6	142536229;142539868	142539693;142540435	-	142536229	142540435	cassetteExon	ENSMUST00000100827.5	known	0.00	0.0	11	0;0	11	n	0.00	0.0	9	0;0	9	n	0.00	0.0	25	0;0	25	n	0.00	0.0	4	0;0	4	n	0.00	0.0	18	0;0	18	n	0.00	0.0	11	0;0	11	n	0.32	7.5	16	8;7	16	y	0.00	0.0	8	0;0	8	n	0.00	0.0	5	0;0	5	n	0.00	0.0	9	0;0	9	n	0.00	0.0	11	0;0	11	n	0.00	0.0	20	0;0	20	n	ENSMUSG00000030249.16	Abcc9	chr6	protein_coding	ATP-binding cassette, sub-family C (CFTR/MRP), member 9
known_NIR_15514	chr6	142702752	142710280	+	142702752;142710155	142710013;142710280	ES	ENSMUST00000032419.9	known	0.00	0	114.5	0	74;155	n	0.00	0	103.0	0	75;131	n	0.00	0	144.0	0	115;173	n	0.01	1	169.0	1	128;210	n	0.00	0	173.5	0	137;210	n	0.00	0	90.0	0	75;105	n	0.00	0	143.5	0	95;192	n	0.00	0	84.0	0	51;117	n	0.02	2	84.5	2	65;104	y	0.00	0	148.5	0	116;181	n	0.00	0	116.0	0	82;150	n	0.01	1	135.5	1	99;172	n	ENSMUSG00000030282.15	Cmas	chr6	protein_coding	cytidine monophospho-N-acetylneuraminic acid synthetase
known_NIR_15515	chr6	142963799	142965054	-	142963799	142974886	A5SS	ENSMUST00000171349.8	known	1.00	2	0	2	0	n	0.62	5	3	5	3	n	0.50	7	7	7	7	y	0.86	6	1	6	1	n	0.67	6	3	6	3	n	0.38	3	5	3	5	n	0.38	3	5	3	5	n	0.75	6	2	6	2	n	0.71	5	2	5	2	n	0.75	3	1	3	1	n	0.80	4	1	4	1	n	0.33	1	2	1	2	n	ENSMUSG00000030279.16	C2cd5	chr6	protein_coding	C2 calcium-dependent domain containing 5
known_NIR_15516	chr6	142963799;142965155	142965054;142966050	-	142963799	142966050	cassetteExon	ENSMUST00000205119.3	known	0.60	3.0	2	2;4	2	n	0.85	5.5	1	5;6	1	n	0.55	6.0	5	7;5	5	y	1.00	6.0	0	6;6	0	n	1.00	4.0	0	6;2	0	n	0.43	3.0	4	3;3	4	y	0.78	3.5	1	3;4	1	n	0.57	6.5	5	6;7	5	y	0.85	5.5	1	5;6	1	n	0.22	2.5	9	3;2	9	y	0.69	4.5	2	4;5	2	y	0.23	1.5	5	1;2	5	n	ENSMUSG00000030279.16	C2cd5	chr6	protein_coding	C2 calcium-dependent domain containing 5
known_NIR_15517	chr6	142963799;142966100	142966050;142974886	-	142963799	142974886	cassetteExon	ENSMUST00000171349.8	known	1.00	4.5	0	2;7	0	n	0.54	3.5	3	1;6	3	n	0.52	7.5	7	5;10	7	y	0.75	3.0	1	0;6	1	n	0.45	2.5	3	0;5	3	n	0.47	4.5	5	4;5	5	y	0.44	4.0	5	1;7	5	n	0.79	7.5	2	5;10	2	y	0.64	3.5	2	1;6	2	n	0.88	7.0	1	9;5	1	n	0.71	2.5	1	2;3	1	n	0.82	9.0	2	5;13	2	y	ENSMUSG00000030279.16	C2cd5	chr6	protein_coding	C2 calcium-dependent domain containing 5
known_NIR_15518	chr6	143143291	143148805	+	143143291	143163323	A3SS	ENSMUST00000204947.3	known	1.00	33	0	33	0	n	1.00	29	0	29	0	n	1.00	85	0	85	0	n	1.00	78	0	78	0	n	0.98	91	2	91	2	y	1.00	51	0	51	0	n	1.00	75	0	75	0	n	1.00	62	0	62	0	n	1.00	23	0	23	0	n	1.00	88	0	88	0	n	1.00	51	0	51	0	n	1.00	82	0	82	0	n	ENSMUSG00000030275.7	Etnk1	chr6	protein_coding	ethanolamine kinase 1
known_NIR_15519	chr6	143819876	143887077	-	143819876;143853259	143853113;143887077	ES	ENSMUST00000038815.14	known	0.57	2	1.5	2	2;1	n	0.00	0	2.5	0	3;2	n	0.67	3	1.5	3	1;2	n	0.73	4	1.5	4	2;1	n	0.32	6	12.5	6	18;7	y	0.00	0	3.0	0	1;5	n	0.44	4	5.0	4	6;4	y	0.00	0	1.5	0	0;3	n	0.14	1	6.0	1	8;4	n	0.24	2	6.5	2	8;5	y	0.40	4	6.0	4	7;5	y	0.27	2	5.5	2	7;4	y	ENSMUSG00000041540.17	Sox5	chr6	protein_coding	SRY (sex determining region Y)-box 5
known_NIR_15520	chr6	143819876	143887077	-	143853259	143887077	3pMXE	ENSMUST00000129050.8	known	0.67	2	1	2	1	n	0.00	0	2	0	2	n	0.60	3	2	3	2	n	0.80	4	1	4	1	n	0.46	6	7	6	7	y	0.00	0	5	0	5	n	0.50	4	4	4	4	n	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.29	2	5	2	5	n	0.44	4	5	4	5	n	0.33	2	4	2	4	n	ENSMUSG00000041540.17	Sox5	chr6	protein_coding	SRY (sex determining region Y)-box 5
known_NIR_15521	chr6	143906646	143968895	-	143906643	143968895	A3SS	ENSMUST00000038815.14	known	0.00	0	5	0	5	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	17	0	17	n	0.00	0	12	0	12	n	0.11	1	8	1	8	n	0.20	2	8	2	8	y	0.00	0	10	0	10	n	0.12	1	7	1	7	n	0.38	3	5	3	5	n	0.14	1	6	1	6	n	0.14	1	6	1	6	n	ENSMUSG00000041540.17	Sox5	chr6	protein_coding	SRY (sex determining region Y)-box 5
known_NIR_15522	chr6	144062380	144100823	-	144062380	144100718	A5SS	ENSMUST00000038815.14	known	0.75	3	1	3	1	n	1.00	3	0	3	0	n	0.33	1	2	1	2	n	0.88	14	2	14	2	y	0.91	10	1	10	1	n	0.78	7	2	7	2	n	1.00	8	0	8	0	n	0.50	2	2	2	2	n	0.88	7	1	7	1	n	0.62	5	3	5	3	n	0.50	1	1	1	1	n	0.50	5	5	5	5	y	ENSMUSG00000041540.17	Sox5	chr6	protein_coding	SRY (sex determining region Y)-box 5
known_NIR_15523	chr6	144100949	144149737	-	144100949	144155057	A5SS	ENSMUST00000038815.14	known	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.11	2	17	2	17	y	ENSMUSG00000041540.17	Sox5	chr6	protein_coding	SRY (sex determining region Y)-box 5
known_NIR_15524	chr6	144100949	144380151	-	144100949	144155057	5pMXE	ENSMUST00000038815.14	known	0.50	1	1	1	1	n	0.67	4	2	4	2	n	0.00	0	1	0	1	n	0.22	2	7	2	7	n	0.27	3	8	3	8	y	0.14	1	6	1	6	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.33	2	4	2	4	n	0.06	1	17	1	17	n	ENSMUSG00000041540.17	Sox5	chr6	protein_coding	SRY (sex determining region Y)-box 5
known_NIR_15525	chr6	145156978	145160910	+	145156978	145160248	A3SS	ENSMUST00000039729.5	known	1.00	79	0	79	0	n	0.98	93	2	93	2	y	0.99	94	1	94	1	n	0.92	117	10	117	10	y	0.96	130	5	130	5	y	0.98	79	2	79	2	y	0.93	136	11	136	11	y	0.96	73	3	73	3	y	0.95	88	5	88	5	y	0.99	163	2	163	2	y	0.91	94	9	94	9	y	0.95	136	7	136	7	y	ENSMUSG00000040370.14	Etfrf1	chr6	protein_coding	electron transfer flavoprotein regulatory factor 1
known_NIR_15526	chr6	145156978	145160910	+	145157202	145160910	A5SS	ENSMUST00000111725.8	known	0.98	79	2	79	2	y	0.97	93	3	93	3	y	0.95	94	5	94	5	y	0.98	117	2	117	2	y	0.96	130	5	130	5	y	1.00	79	0	79	0	n	0.99	136	2	136	2	y	1.00	73	0	73	0	n	1.00	88	0	88	0	n	0.98	163	4	163	4	y	0.99	94	1	94	1	n	0.97	136	4	136	4	y	ENSMUSG00000040370.14	Etfrf1	chr6	protein_coding	electron transfer flavoprotein regulatory factor 1
known_NIR_15527	chr6	145156978	145160910	+	145160510	145160910	A5SS&ES	ENSMUST00000111723.8	known	0.98	79	2	79	2	y	0.96	93	4	93	4	y	0.98	94	2	94	2	y	0.99	117	1	117	1	n	0.98	130	3	130	3	y	0.99	79	1	79	1	n	0.94	136	9	136	9	y	1.00	73	0	73	0	n	0.98	88	2	88	2	y	0.98	163	4	163	4	y	0.94	94	6	94	6	y	0.93	136	10	136	10	y	ENSMUSG00000040370.14	Etfrf1	chr6	protein_coding	electron transfer flavoprotein regulatory factor 1
known_NIR_15528	chr6	145156978;145160510	145160248;145160910	+	145156978	145160910	cassetteExon	ENSMUST00000111726.10	known	0.01	1.0	79	0;2	79	n	0.03	3.0	93	2;4	93	y	0.02	1.5	94	1;2	94	n	0.04	5.5	117	10;1	117	n	0.03	4.0	130	5;3	130	y	0.02	1.5	79	2;1	79	n	0.07	10.0	136	11;9	136	y	0.02	1.5	73	3;0	73	n	0.04	3.5	88	5;2	88	y	0.02	3.0	163	2;4	163	y	0.07	7.5	94	9;6	94	y	0.06	8.5	136	7;10	136	y	ENSMUSG00000040370.14	Etfrf1	chr6	protein_coding	electron transfer flavoprotein regulatory factor 1
known_NIR_15529	chr6	145160510	145160910	+	145157202	145160910	A5SS	ENSMUST00000111725.8	known	0.50	2	2	2	2	n	0.57	4	3	4	3	n	0.29	2	5	2	5	n	0.33	1	2	1	2	n	0.38	3	5	3	5	n	1.00	1	0	1	0	n	0.82	9	2	9	2	y	-	-	-	-	-	-	1.00	2	0	2	0	n	0.50	4	4	4	4	n	0.86	6	1	6	1	n	0.71	10	4	10	4	y	ENSMUSG00000040370.14	Etfrf1	chr6	protein_coding	electron transfer flavoprotein regulatory factor 1
known_NIR_15530	chr6	145166450	145177821	-	145166450	145170800	5pMXE	ENSMUST00000149314.2	known	0.60	38	25	38	25	y	0.56	31	24	31	24	y	0.66	103	53	103	53	y	0.54	30	26	30	26	y	0.63	64	38	64	38	y	0.71	42	17	42	17	y	0.49	42	43	42	43	y	0.65	37	20	37	20	y	0.64	28	16	28	16	y	0.48	32	35	32	35	y	0.58	33	24	33	24	y	0.56	48	38	48	38	y	ENSMUSG00000030265.15	Kras	chr6	protein_coding	Kirsten rat sarcoma viral oncogene homolog
known_NIR_15531	chr6	145166450;145170923	145170800;145177821	-	145166450	145177821	cassetteExon	ENSMUST00000032399.12	known	0.34	20.0	38	25;15	38	y	0.41	21.5	31	24;19	31	y	0.31	46.5	103	53;40	103	y	0.44	24.0	30	26;22	30	y	0.38	38.5	64	38;39	64	y	0.32	20.0	42	17;23	42	y	0.48	39.0	42	43;35	42	y	0.34	19.0	37	20;18	37	y	0.46	23.5	28	16;31	28	y	0.52	35.0	32	35;35	32	y	0.44	26.0	33	24;28	33	y	0.46	40.5	48	38;43	48	y	ENSMUSG00000030265.15	Kras	chr6	protein_coding	Kirsten rat sarcoma viral oncogene homolog
known_NIR_15532	chr6	145696408	145754110	+	145692692	145754110	A5SS	ENSMUST00000111704.8	known	0.09	1	10	1	10	n	0.00	0	6	0	6	n	0.30	3	7	3	7	y	0.33	6	12	6	12	y	0.18	6	27	6	27	y	0.00	0	7	0	7	n	0.12	3	22	3	22	y	0.13	2	13	2	13	y	0.20	1	4	1	4	n	0.19	4	17	4	17	y	0.33	2	4	2	4	n	0.10	2	19	2	19	y	ENSMUSG00000030259.13	Rassf8	chr6	protein_coding	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8
known_NIR_15533	chr6	146319513;146320014	146319916;146324204	-	146319513	146324204	cassetteExon	ENSMUST00000079573.13	known	1.00	3.5	0	4;3	0	n	1.00	4.5	0	4;5	0	n	1.00	5.5	0	6;5	0	n	0.70	7.0	3	5;9	3	y	1.00	9.5	0	14;5	0	n	1.00	5.0	0	4;6	0	n	1.00	6.0	0	8;4	0	n	0.50	2.0	2	0;4	2	n	0.73	5.5	2	4;7	2	y	0.71	7.5	3	13;2	3	y	0.80	8.0	2	10;6	2	y	0.95	18.0	1	19;17	1	n	ENSMUSG00000030287.16	Itpr2	chr6	protein_coding	inositol 1,4,5-triphosphate receptor 2
known_NIR_15534	chr6	146451483	146452137	-	146451483	146451585	5pMXE	ENSMUST00000152994.2	known	0.68	30	14	30	14	y	0.86	36	6	36	6	y	0.82	50	11	50	11	y	0.91	39	4	39	4	y	0.85	33	6	33	6	y	0.67	16	8	16	8	y	0.71	34	14	34	14	y	0.94	15	1	15	1	n	0.78	25	7	25	7	y	0.82	47	10	47	10	y	0.89	54	7	54	7	y	0.86	37	6	37	6	y	ENSMUSG00000040250.15	Ints13	chr6	protein_coding	integrator complex subunit 13
known_NIR_15535	chr6	146451483;146451662	146451585;146452137	-	146451483	146452137	cassetteExon	ENSMUST00000139979.8	known	0.31	13.5	30	14;13	30	y	0.18	8.0	36	6;10	36	y	0.19	12.0	50	11;13	50	y	0.17	8.0	39	4;12	39	y	0.24	10.5	33	6;15	33	y	0.20	4.0	16	8;0	16	n	0.24	11.0	34	14;8	34	y	0.03	0.5	15	1;0	15	n	0.19	6.0	25	7;5	25	y	0.18	10.5	47	10;11	47	y	0.12	7.5	54	7;8	54	y	0.12	5.0	37	6;4	37	y	ENSMUSG00000040250.15	Ints13	chr6	protein_coding	integrator complex subunit 13
known_NIR_15536	chr6	146456144	146457629	-	146456596	146457629	3pMXE	ENSMUST00000131662.2	known	0.00	0	42	0	42	n	0.00	0	20	0	20	n	0.00	0	47	0	47	n	0.00	0	30	0	30	n	0.03	1	38	1	38	n	0.00	0	23	0	23	n	0.00	0	44	0	44	n	0.00	0	20	0	20	n	0.11	2	16	2	16	y	0.04	2	44	2	44	y	0.00	0	32	0	32	n	0.00	0	31	0	31	n	ENSMUSG00000040250.15	Ints13	chr6	protein_coding	integrator complex subunit 13
known_NIR_15537	chr6	146456144;146456550	146456426;146457629	-	146456144	146457629	cassetteExon	ENSMUST00000203545.3	known	1.00	28.0	0	53;3	0	n	1.00	19.5	0	34;5	0	n	1.00	29.5	0	52;7	0	n	1.00	29.0	0	56;2	0	n	0.96	26.0	1	50;2	1	n	1.00	14.5	0	24;5	0	n	1.00	29.5	0	51;8	0	n	1.00	17.5	0	33;2	0	n	0.92	22.0	2	44;0	2	n	0.93	28.5	2	52;5	2	y	1.00	21.0	0	38;4	0	n	1.00	25.0	0	46;4	0	n	ENSMUSG00000040250.15	Ints13	chr6	protein_coding	integrator complex subunit 13
known_NIR_15538	chr6	146456144;146456596	146456426;146457629	-	146456144	146457629	cassetteExon	ENSMUST00000203545.3	known	1.00	47.5	0	53;42	0	n	1.00	27.0	0	34;20	0	n	1.00	49.5	0	52;47	0	n	1.00	43.0	0	56;30	0	n	0.98	44.0	1	50;38	1	n	1.00	23.5	0	24;23	0	n	1.00	47.5	0	51;44	0	n	1.00	26.5	0	33;20	0	n	0.94	30.0	2	44;16	2	y	0.96	48.0	2	52;44	2	y	1.00	35.0	0	38;32	0	n	1.00	38.5	0	46;31	0	n	ENSMUSG00000040250.15	Ints13	chr6	protein_coding	integrator complex subunit 13
known_NIR_15539	chr6	146456550	146457629	-	146456596	146457629	A3SS	ENSMUST00000032427.15	known	0.07	3	42	3	42	y	0.20	5	20	5	20	y	0.13	7	47	7	47	y	0.06	2	30	2	30	y	0.05	2	38	2	38	y	0.18	5	23	5	23	y	0.15	8	44	8	44	y	0.09	2	20	2	20	y	0.00	0	16	0	16	n	0.10	5	44	5	44	y	0.11	4	32	4	32	y	0.11	4	31	4	31	y	ENSMUSG00000040250.15	Ints13	chr6	protein_coding	integrator complex subunit 13
known_NIR_15540	chr6	146487316	146491392	+	146487316;146490355	146490238;146491392	ES	ENSMUST00000037836.12	known	0.01	1	133.0	1	124;142	n	0.02	3	130.5	3	119;142	y	0.00	0	184.5	0	180;189	n	0.00	0	148.5	0	160;137	n	0.00	0	210.5	0	223;198	n	0.01	1	101.5	1	103;100	n	0.00	0	178.0	0	163;193	n	0.01	1	104.5	1	102;107	n	0.03	4	112.5	4	108;117	y	0.01	2	179.5	2	176;183	y	0.02	2	131.0	2	114;148	y	0.00	0	179.5	0	170;189	n	ENSMUSG00000040242.15	Fgfr1op2	chr6	protein_coding	FGFR1 oncogene partner 2
known_NIR_15541	chr6	146491534	146496674	+	146491534	146494132	3pMXE	ENSMUST00000037836.12	known	0.30	39	90	39	90	y	0.24	38	120	38	120	y	0.18	41	193	41	193	y	0.39	71	112	71	112	y	0.28	68	178	68	178	y	0.27	26	70	26	70	y	0.38	90	149	90	149	y	0.15	17	97	17	97	y	0.34	51	97	51	97	y	0.35	86	161	86	161	y	0.30	48	113	48	113	y	0.39	81	128	81	128	y	ENSMUSG00000040242.15	Fgfr1op2	chr6	protein_coding	FGFR1 oncogene partner 2
known_NIR_15542	chr6	146491534;146494245	146494132;146496674	+	146491534	146496674	cassetteExon	ENSMUST00000067404.13	known	0.58	54.5	39	90;19	39	y	0.65	72.0	38	120;24	38	y	0.76	127.5	41	193;62	41	y	0.49	67.5	71	112;23	71	y	0.63	117.0	68	178;56	68	y	0.65	48.5	26	70;27	26	y	0.51	94.5	90	149;40	90	y	0.79	63.0	17	97;29	17	y	0.54	60.5	51	97;24	51	y	0.54	102.5	86	161;44	86	y	0.60	71.0	48	113;29	48	y	0.50	79.5	81	128;31	81	y	ENSMUSG00000040242.15	Fgfr1op2	chr6	protein_coding	FGFR1 oncogene partner 2
known_NIR_15543	chr6	146521509	146523373	-	146521509	146527594	A5SS	ENSMUST00000127529.2	known	1.00	119	0	119	0	n	0.98	87	2	87	2	y	0.99	171	2	171	2	y	1.00	141	0	141	0	n	0.99	181	1	181	1	n	1.00	110	0	110	0	n	0.99	161	1	161	1	n	0.98	99	2	99	2	y	0.99	108	1	108	1	n	0.99	192	2	192	2	y	1.00	149	0	149	0	n	1.00	179	0	179	0	n	ENSMUSG00000040234.17	Tm7sf3	chr6	protein_coding	transmembrane 7 superfamily member 3
known_NIR_15544	chr6	146525212	146527594	-	146521509	146527594	A3SS	ENSMUST00000127529.2	known	1.00	96	0	96	0	n	0.98	88	2	88	2	y	0.99	178	2	178	2	y	1.00	162	0	162	0	n	0.99	177	1	177	1	n	1.00	106	0	106	0	n	0.99	176	1	176	1	n	0.98	100	2	100	2	y	0.99	81	1	81	1	n	0.99	165	2	165	2	y	1.00	105	0	105	0	n	1.00	156	0	156	0	n	ENSMUSG00000040234.17	Tm7sf3	chr6	protein_coding	transmembrane 7 superfamily member 3
known_NIR_15545	chr6	146544150	146550648	+	146544150;146549777	146549663;146550648	ES	ENSMUST00000032429.9	known	0.00	0	95.0	0	69;121	n	0.00	0	108.0	0	82;134	n	0.02	3	125.5	3	104;147	y	0.01	1	105.0	1	105;105	n	0.01	2	136.0	2	110;162	y	0.00	0	43.0	0	31;55	n	0.01	1	129.5	1	96;163	n	0.00	0	63.0	0	50;76	n	0.00	0	89.0	0	75;103	n	0.00	0	143.0	0	115;171	n	0.01	1	102.0	1	78;126	n	0.02	3	119.5	3	100;139	y	ENSMUSG00000030291.13	Med21	chr6	protein_coding	mediator complex subunit 21
known_NIR_15546	chr6	146544150	146550648	+	146549777	146550648	5pMXE	ENSMUST00000075077.3	known	0.00	0	121	0	121	n	0.00	0	134	0	134	n	0.02	3	147	3	147	y	0.01	1	105	1	105	n	0.01	2	162	2	162	y	0.00	0	55	0	55	n	0.01	1	163	1	163	n	0.00	0	76	0	76	n	0.00	0	103	0	103	n	0.00	0	171	0	171	n	0.01	1	126	1	126	n	0.02	3	139	3	139	y	ENSMUSG00000030291.13	Med21	chr6	protein_coding	mediator complex subunit 21
known_NIR_15547	chr6	146676989	146677071	+	146676989	146677092	A3SS	ENSMUST00000001675.14	known	0.06	2	32	2	32	y	0.00	0	20	0	20	n	0.00	0	49	0	49	n	0.13	4	26	4	26	y	0.02	1	56	1	56	n	0.00	0	25	0	25	n	0.02	1	46	1	46	n	0.05	1	20	1	20	n	0.00	0	32	0	32	n	0.15	8	47	8	47	y	0.00	0	33	0	33	n	0.04	2	46	2	46	y	ENSMUSG00000001630.14	Stk38l	chr6	protein_coding	serine/threonine kinase 38 like
known_NIR_15548	chr6	146790181;146819406	146819246;146840404	+	146790181	146840404	cassetteExon	ENSMUST00000016631.14	known	0.14	1.5	9	1;2	9	n	0.00	0.0	3	0;0	3	n	0.21	6.0	22	6;6	22	y	0.12	1.0	7	0;2	7	n	0.11	2.5	20	3;2	20	y	0.11	1.5	12	3;0	12	n	0.22	2.5	9	2;3	9	y	0.14	2.5	15	0;5	15	n	0.04	0.5	12	0;1	12	n	0.20	4.5	18	6;3	18	y	0.00	0.0	11	0;0	11	n	0.18	1.5	7	2;1	7	n	ENSMUSG00000016487.16	Ppfibp1	chr6	protein_coding	PTPRF interacting protein, binding protein 1 (liprin beta 1)
known_NIR_15549	chr6	146897980	146899665	+	146898399	146899665	A5SS	ENSMUST00000126774.2	known	1.00	16	0	16	0	n	1.00	18	0	18	0	n	1.00	65	0	65	0	n	1.00	48	0	48	0	n	1.00	45	0	45	0	n	1.00	25	0	25	0	n	0.89	47	6	47	6	y	1.00	42	0	42	0	n	1.00	28	0	28	0	n	1.00	26	0	26	0	n	1.00	25	0	25	0	n	1.00	45	0	45	0	n	ENSMUSG00000016487.16	Ppfibp1	chr6	protein_coding	PTPRF interacting protein, binding protein 1 (liprin beta 1)
known_NIR_15550	chr6	146899779;146901192	146901160;146902439	+	146899779	146902439	cassetteExon	ENSMUST00000016631.14	known	0.08	1.0	11	1;1	11	n	0.00	0.0	9	0;0	9	n	0.00	0.0	57	0;0	57	n	0.11	2.0	17	2;2	17	y	0.07	4.5	62	5;4	62	y	0.00	0.0	38	0;0	38	n	0.11	3.0	24	3;3	24	y	0.07	2.0	27	2;2	27	y	0.12	1.5	11	2;1	11	n	0.04	1.5	34	1;2	34	n	0.00	0.0	31	0;0	31	n	0.09	4.0	43	5;3	43	y	ENSMUSG00000016487.16	Ppfibp1	chr6	protein_coding	PTPRF interacting protein, binding protein 1 (liprin beta 1)
known_NIR_15551	chr6	146914016;146914445	146914416;146917720	+	146914016	146917720	cassetteExon	ENSMUST00000016631.14	known	0.14	2.5	16	3;2	16	y	0.11	2.0	16	2;2	16	y	0.07	3.0	38	3;3	38	y	0.08	1.5	17	2;1	17	n	0.10	3.5	32	4;3	32	y	0.12	1.5	11	2;1	11	n	0.17	4.0	20	4;4	20	y	0.09	2.0	20	3;1	20	n	0.18	3.0	14	3;3	14	y	0.25	6.5	20	8;5	20	y	0.20	3.0	12	4;2	12	y	0.17	5.0	24	4;6	24	y	ENSMUSG00000016487.16	Ppfibp1	chr6	protein_coding	PTPRF interacting protein, binding protein 1 (liprin beta 1)
known_NIR_15552	chr6	146917891;146918391	146918359;146920532	+	146917891	146920532	cassetteExon	ENSMUST00000016631.14	known	0.14	2.5	15	3;2	15	y	0.03	0.5	16	1;0	16	n	0.32	19.0	41	17;21	41	y	0.08	1.5	17	2;1	17	n	0.11	4.5	35	4;5	35	y	0.57	10.5	8	12;9	8	y	0.26	11.0	31	11;11	31	y	0.37	7.5	13	7;8	13	y	0.15	2.5	14	2;3	14	y	0.09	3.0	32	3;3	32	y	0.13	2.5	17	3;2	17	y	0.22	8.0	28	8;8	28	y	ENSMUSG00000016487.16	Ppfibp1	chr6	protein_coding	PTPRF interacting protein, binding protein 1 (liprin beta 1)
known_NIR_15553	chr6	146946140	146947609	+	146944398	146947609	A5SS	ENSMUST00000149660.2	known	0.00	0	38	0	38	n	0.00	0	51	0	51	n	0.06	2	29	2	29	y	0.00	0	62	0	62	n	0.00	0	57	0	57	n	0.00	0	20	0	20	n	0.00	0	45	0	45	n	0.04	1	26	1	26	n	0.00	0	59	0	59	n	0.00	0	81	0	81	n	0.03	2	62	2	62	y	0.03	2	76	2	76	y	ENSMUSG00000040112.10	Mrps35	chr6	protein_coding	mitochondrial ribosomal protein S35
known_NIR_15554	chr6	147377557	147409282	+	147377393	147409282	A5SS	ENSMUST00000203659.3	known	1.00	51	0	51	0	n	1.00	18	0	18	0	n	1.00	29	0	29	0	n	0.98	41	1	41	1	n	1.00	50	0	50	0	n	1.00	28	0	28	0	n	1.00	48	0	48	0	n	1.00	21	0	21	0	n	1.00	27	0	27	0	n	0.96	48	2	48	2	y	1.00	17	0	17	0	n	0.97	32	1	32	1	n	ENSMUSG00000030301.18	Ccdc91	chr6	protein_coding	coiled-coil domain containing 91
known_NIR_15555	chr6	147412400;147434861	147434774;147435527	+	147412400	147435527	cassetteExon	ENSMUST00000032441.14	known	0.11	5.0	39	4;6	39	y	0.11	3.5	28	2;5	28	y	0.04	1.5	41	2;1	41	n	0.00	0.0	51	0;0	51	n	0.07	5.5	76	3;8	76	y	0.06	2.5	39	2;3	39	y	0.04	2.5	65	3;2	65	y	0.05	1.5	30	3;0	30	n	0.04	1.0	27	0;2	27	n	0.02	1.5	65	1;2	65	n	0.02	1.0	41	1;1	41	n	0.04	2.0	55	2;2	55	y	ENSMUSG00000030301.18	Ccdc91	chr6	protein_coding	coiled-coil domain containing 91
known_NIR_15556	chr6	148083468	148084587	-	148083468	148084544	A5SS	ENSMUST00000136008.8	known	0.03	4	119	4	119	y	0.03	3	101	3	101	y	0.05	7	146	7	146	y	0.04	5	107	5	107	y	0.06	9	144	9	144	y	0.05	6	105	6	105	y	0.03	5	168	5	168	y	0.00	0	112	0	112	n	0.04	5	113	5	113	y	0.06	9	135	9	135	y	0.00	0	125	0	125	n	0.03	5	147	5	147	y	ENSMUSG00000030304.12	Ergic2	chr6	protein_coding	ERGIC and golgi 2
known_NIR_15557	chr6	148084706;148088745	148088713;148089531	-	148084706	148089531	cassetteExon	ENSMUST00000136008.8	known	0.00	0.5	150	1;0	150	n	0.00	0.5	130	0;1	130	n	0.00	0.0	225	0;0	225	n	0.02	2.5	158	4;1	158	n	0.00	1.0	229	2;0	229	n	0.02	2.0	119	2;2	119	y	0.01	2.0	221	1;3	221	n	0.00	0.0	130	0;0	130	n	0.01	1.0	134	0;2	134	n	0.01	1.5	166	1;2	166	n	0.01	1.0	149	0;2	149	n	0.01	3.0	207	3;3	207	y	ENSMUSG00000030304.12	Ergic2	chr6	protein_coding	ERGIC and golgi 2
known_NIR_15558	chr6	148085672	148089531	-	148084706	148089531	A3SS	ENSMUST00000136008.8	known	0.00	0	150	0	150	n	0.01	1	130	1	130	n	0.02	5	225	5	225	y	0.02	4	158	4	158	y	0.01	2	229	2	229	y	0.00	0	119	0	119	n	0.02	5	221	5	221	y	0.01	1	130	1	130	n	0.02	3	134	3	134	y	0.01	1	166	1	166	n	0.01	2	149	2	149	y	0.00	1	207	1	207	n	ENSMUSG00000030304.12	Ergic2	chr6	protein_coding	ERGIC and golgi 2
known_NIR_15559	chr6	148089598	148090984	-	148089628	148090984	A3SS	ENSMUST00000136008.8	known	0.03	5	156	5	156	y	0.03	5	152	5	152	y	0.04	11	255	11	255	y	0.07	13	185	13	185	y	0.05	12	218	12	218	y	0.04	7	151	7	151	y	0.04	11	234	11	234	y	0.05	7	126	7	126	y	0.02	4	157	4	157	y	0.01	1	199	1	199	n	0.05	9	166	9	166	y	0.04	8	195	8	195	y	ENSMUSG00000030304.12	Ergic2	chr6	protein_coding	ERGIC and golgi 2
known_NIR_15560	chr6	148091082	148092328	-	148091082	148092417	A5SS	ENSMUST00000134574.8	known	1.00	119	0	119	0	n	0.97	105	3	105	3	y	0.99	193	2	193	2	y	0.98	126	2	126	2	y	0.99	203	2	203	2	y	0.97	99	3	99	3	y	0.99	180	2	180	2	y	1.00	73	0	73	0	n	0.96	119	5	119	5	y	0.99	166	2	166	2	y	0.99	135	2	135	2	y	0.99	159	1	159	1	n	ENSMUSG00000030304.12	Ergic2	chr6	protein_coding	ERGIC and golgi 2
known_NIR_15561	chr6	148091082	148096693	-	148091082;148092383	148092328;148096693	ES	ENSMUST00000136008.8	known	0.00	0	122.5	0	119;126	n	0.02	2	98.5	2	105;92	y	0.00	0	185.5	0	193;178	n	0.01	1	122.0	1	126;118	n	0.00	0	191.0	0	203;179	n	0.00	0	99.5	0	99;100	n	0.00	0	179.0	0	180;178	n	0.00	0	79.0	0	73;85	n	0.00	0	111.0	0	119;103	n	0.00	0	157.5	0	166;149	n	0.02	2	126.5	2	135;118	y	0.00	0	151.5	0	159;144	n	ENSMUSG00000030304.12	Ergic2	chr6	protein_coding	ERGIC and golgi 2
known_NIR_15562	chr6	148091082;148092521	148092417;148096693	-	148091082;148092383	148092328;148096693	MXE	ENSMUST00000136008.8	known	0.01	1.0	122.5	0;2	119;126	n	0.01	1.5	98.5	3;0	105;92	n	0.01	1.0	185.5	2;0	193;178	n	0.02	2.5	122.0	2;3	126;118	y	0.02	3.5	191.0	2;5	203;179	y	0.02	2.5	99.5	3;2	99;100	y	0.01	1.5	179.0	2;1	180;178	n	0.01	0.5	79.0	0;1	73;85	n	0.03	3.5	111.0	5;2	119;103	y	0.01	1.0	157.5	2;0	166;149	n	0.01	1.0	126.5	2;0	135;118	n	0.01	2.0	151.5	1;3	159;144	n	ENSMUSG00000030304.12	Ergic2	chr6	protein_coding	ERGIC and golgi 2
known_NIR_15563	chr6	148092383	148096693	-	148092521	148096693	3pMXE	ENSMUST00000145162.2	known	0.98	126	2	126	2	y	1.00	92	0	92	0	n	1.00	178	0	178	0	n	0.98	118	3	118	3	y	0.97	179	5	179	5	y	0.98	100	2	100	2	y	0.99	178	1	178	1	n	0.99	85	1	85	1	n	0.98	103	2	103	2	y	1.00	149	0	149	0	n	1.00	118	0	118	0	n	0.98	144	3	144	3	y	ENSMUSG00000030304.12	Ergic2	chr6	protein_coding	ERGIC and golgi 2
known_NIR_15564	chr6	148103037	148103994	-	148102984	148103994	A3SS	ENSMUST00000136008.8	known	0.00	0	84	0	84	n	0.00	0	60	0	60	n	0.02	3	141	3	141	y	0.00	0	75	0	75	n	0.02	3	155	3	155	y	0.00	0	84	0	84	n	0.02	2	123	2	123	y	0.00	0	85	0	85	n	0.00	0	96	0	96	n	0.00	0	137	0	137	n	0.00	0	98	0	98	n	0.00	0	88	0	88	n	ENSMUSG00000030304.12	Ergic2	chr6	protein_coding	ERGIC and golgi 2
known_NIR_15565	chr6	148104623	148106274	-	148104040	148106274	A3SS	ENSMUST00000136008.8	known	0.24	25	80	25	80	y	0.20	13	51	13	51	y	0.20	33	128	33	128	y	0.22	23	83	23	83	y	0.19	39	163	39	163	y	0.19	17	71	17	71	y	0.21	36	134	36	134	y	0.27	29	78	29	78	y	0.26	26	73	26	73	y	0.15	23	132	23	132	y	0.17	20	95	20	95	y	0.30	42	98	42	98	y	ENSMUSG00000030304.12	Ergic2	chr6	protein_coding	ERGIC and golgi 2
known_NIR_15566	chr6	148106382;148107708	148107598;148108031	-	148106382	148108031	cassetteExon	ENSMUST00000136008.8	known	0.07	6.0	77	3;9	77	y	0.04	2.5	58	4;1	58	n	0.06	8.5	146	9;8	146	y	0.05	4.0	80	4;4	80	y	0.04	5.5	147	4;7	147	y	0.05	4.5	82	5;4	82	y	0.02	2.0	117	2;2	117	y	0.08	6.5	77	7;6	77	y	0.04	3.0	75	2;4	75	y	0.04	4.5	114	7;2	114	y	0.07	6.5	91	7;6	91	y	0.09	9.5	100	12;7	100	y	ENSMUSG00000030304.12	Ergic2	chr6	protein_coding	ERGIC and golgi 2
known_NIR_15567	chr6	148674304	148676475	-	148674307	148676475	A3SS	ENSMUST00000048418.14	known	0.13	7	48	7	48	y	0.19	10	42	10	42	y	0.12	7	51	7	51	y	0.10	7	63	7	63	y	0.17	14	67	14	67	y	0.12	4	28	4	28	y	0.21	19	71	19	71	y	0.14	5	31	5	31	y	0.07	3	42	3	42	y	0.13	12	77	12	77	y	0.13	5	33	5	33	y	0.25	14	43	14	43	y	ENSMUSG00000040029.16	Ipo8	chr6	protein_coding	importin 8
known_NIR_15568	chr6	148706219	148711378	-	148706219;148708017	148707883;148711378	ES	ENSMUST00000048418.14	known	0.00	0	27.0	0	22;32	n	0.00	0	22.5	0	25;20	n	0.00	0	48.0	0	60;36	n	0.00	0	47.5	0	51;44	n	0.05	3	61.5	3	68;55	y	0.00	0	18.5	0	17;20	n	0.00	0	37.5	0	36;39	n	0.00	0	39.0	0	45;33	n	0.00	0	35.0	0	33;37	n	0.00	0	56.5	0	51;62	n	0.03	1	38.0	1	48;28	n	0.00	0	58.0	0	70;46	n	ENSMUSG00000040029.16	Ipo8	chr6	protein_coding	importin 8
known_NIR_15569	chr6	148725954	148732662	-	148725983	148732662	A3SS	ENSMUST00000048418.14	known	0.12	1	7	1	7	n	0.33	1	2	1	2	n	0.04	1	22	1	22	n	0.00	0	21	0	21	n	0.08	2	23	2	23	y	0.14	2	12	2	12	y	0.06	1	16	1	16	n	0.00	0	19	0	19	n	0.00	0	11	0	11	n	0.08	2	24	2	24	y	0.00	0	17	0	17	n	0.08	2	23	2	23	y	ENSMUSG00000040029.16	Ipo8	chr6	protein_coding	importin 8
known_NIR_15570	chr6	148982413;148986434	148986369;149002681	-	148982413	149002681	cassetteExon	ENSMUST00000111557.8	known	0.87	13.5	2	12;15	2	y	1.00	8.0	0	6;10	0	n	0.86	18.0	3	12;24	3	y	1.00	17.5	0	21;14	0	n	1.00	34.5	0	33;36	0	n	0.89	17.0	2	17;17	2	y	1.00	14.5	0	16;13	0	n	0.95	18.5	1	14;23	1	n	1.00	9.5	0	10;9	0	n	0.82	18.5	4	18;19	4	y	1.00	13.5	0	12;15	0	n	1.00	16.0	0	11;21	0	n	ENSMUSG00000030313.16	Dennd5b	chr6	protein_coding	DENN/MADD domain containing 5B
known_NIR_15571	chr6	149043202	149044104	+	149041461	149044104	A5SS	ENSMUST00000126406.8	known	0.88	73	10	73	10	y	0.86	90	15	90	15	y	0.90	260	30	260	30	y	0.93	95	7	95	7	y	0.96	178	7	178	7	y	0.80	114	29	114	29	y	0.93	157	11	157	11	y	0.87	115	17	115	17	y	0.88	65	9	65	9	y	0.94	140	9	140	9	y	0.93	91	7	91	7	y	0.94	160	10	160	10	y	ENSMUSG00000039958.18	Etfbkmt	chr6	protein_coding	electron transfer flavoprotein beta subunit lysine methyltransferase
known_NIR_15572	chr6	149043202	149044104	+	149043202	149048656	A3SS	ENSMUST00000147934.4	known	0.97	73	2	73	2	y	0.96	90	4	90	4	y	1.00	260	1	260	1	n	0.97	95	3	95	3	y	0.97	178	5	178	5	y	0.98	114	2	114	2	y	0.96	157	7	157	7	y	0.93	115	9	115	9	y	0.89	65	8	65	8	y	0.92	140	12	140	12	y	0.97	91	3	91	3	y	0.95	160	9	160	9	y	ENSMUSG00000039958.18	Etfbkmt	chr6	protein_coding	electron transfer flavoprotein beta subunit lysine methyltransferase
known_NIR_15573	chr6	149043202	149045513	+	149043202	149044104	A3SS&ES	ENSMUST00000111548.8	known	0.03	2	73	2	73	y	0.01	1	90	1	90	n	0.00	1	260	1	260	n	0.04	4	95	4	95	y	0.03	5	178	5	178	y	0.00	0	114	0	114	n	0.02	3	157	3	157	y	0.01	1	115	1	115	n	0.02	1	65	1	65	n	0.03	4	140	4	140	y	0.01	1	91	1	91	n	0.01	1	160	1	160	n	ENSMUSG00000039958.18	Etfbkmt	chr6	protein_coding	electron transfer flavoprotein beta subunit lysine methyltransferase
known_NIR_15574	chr6	149043202	149045532	+	149043202	149044104	A3SS&ES	ENSMUST00000111551.2	known	0.31	33	73	33	73	y	0.28	35	90	35	90	y	0.21	68	260	68	260	y	0.34	50	95	50	95	y	0.33	88	178	88	178	y	0.32	54	114	54	114	y	0.30	66	157	66	157	y	0.38	69	115	69	115	y	0.38	40	65	40	65	y	0.26	49	140	49	140	y	0.26	32	91	32	91	y	0.26	57	160	57	160	y	ENSMUSG00000039958.18	Etfbkmt	chr6	protein_coding	electron transfer flavoprotein beta subunit lysine methyltransferase
known_NIR_15575	chr6	149043202	149045532	+	149043202	149045513	A3SS	ENSMUST00000179873.8	known	0.94	33	2	33	2	y	0.97	35	1	35	1	n	0.99	68	1	68	1	n	0.93	50	4	50	4	y	0.95	88	5	88	5	y	1.00	54	0	54	0	n	0.96	66	3	66	3	y	0.99	69	1	69	1	n	0.98	40	1	40	1	n	0.92	49	4	49	4	y	0.97	32	1	32	1	n	0.98	57	1	57	1	n	ENSMUSG00000039958.18	Etfbkmt	chr6	protein_coding	electron transfer flavoprotein beta subunit lysine methyltransferase
known_NIR_15576	chr6	149043202	149045532	+	149044213	149045532	A5SS&ES	ENSMUST00000126406.8	known	0.26	33	95	33	95	y	0.28	35	89	35	89	y	0.16	68	369	68	369	y	0.25	50	147	50	147	y	0.29	88	213	88	213	y	0.25	54	161	54	161	y	0.27	66	183	66	183	y	0.32	69	146	69	146	y	0.33	40	82	40	82	y	0.23	49	167	49	167	y	0.25	32	94	32	94	y	0.21	57	210	57	210	y	ENSMUSG00000039958.18	Etfbkmt	chr6	protein_coding	electron transfer flavoprotein beta subunit lysine methyltransferase
known_NIR_15577	chr6	149043202	149048656	+	149043202	149045532	3pMXE	ENSMUST00000111547.2	known	0.06	2	33	2	33	y	0.10	4	35	4	35	y	0.01	1	68	1	68	n	0.06	3	50	3	50	y	0.05	5	88	5	88	y	0.04	2	54	2	54	y	0.10	7	66	7	66	y	0.12	9	69	9	69	y	0.17	8	40	8	40	y	0.20	12	49	12	49	y	0.09	3	32	3	32	y	0.14	9	57	9	57	y	ENSMUSG00000039958.18	Etfbkmt	chr6	protein_coding	electron transfer flavoprotein beta subunit lysine methyltransferase
known_NIR_15578	chr6	149043202	149048656	+	149043202;149045940	149045513;149048656	ES	ENSMUST00000179873.8	known	0.03	2	60.0	2	2;118	y	0.05	4	79.0	4	1;157	n	0.01	1	157.0	1	1;313	n	0.03	3	107.5	3	4;211	y	0.03	5	146.5	5	5;288	y	0.02	2	96.0	2	0;192	n	0.05	7	130.0	7	3;257	y	0.08	9	110.5	9	1;220	n	0.13	8	54.5	8	1;108	n	0.09	12	117.0	12	4;230	y	0.04	3	69.5	3	1;138	n	0.07	9	129.0	9	1;257	n	ENSMUSG00000039958.18	Etfbkmt	chr6	protein_coding	electron transfer flavoprotein beta subunit lysine methyltransferase
known_NIR_15579	chr6	149043202	149048656	+	149043202;149045940	149045532;149048656	ES	ENSMUST00000047531.16	known	0.03	2	75.5	2	33;118	y	0.04	4	96.0	4	35;157	y	0.01	1	190.5	1	68;313	n	0.02	3	130.5	3	50;211	y	0.03	5	188.0	5	88;288	y	0.02	2	123.0	2	54;192	y	0.04	7	161.5	7	66;257	y	0.06	9	144.5	9	69;220	y	0.10	8	74.0	8	40;108	y	0.08	12	139.5	12	49;230	y	0.03	3	85.0	3	32;138	y	0.05	9	157.0	9	57;257	y	ENSMUSG00000039958.18	Etfbkmt	chr6	protein_coding	electron transfer flavoprotein beta subunit lysine methyltransferase
known_NIR_15580	chr6	149043202;149044213	149044104;149045513	+	149043202	149045513	cassetteExon	ENSMUST00000179873.8	known	0.95	37.0	2	73;1	2	n	0.98	47.0	1	90;4	1	n	0.99	133.0	1	260;6	1	n	0.93	49.5	4	95;4	4	y	0.95	91.0	5	178;4	5	y	1.00	57.5	0	114;1	0	n	0.96	82.0	3	157;7	3	y	0.98	61.5	1	115;8	1	n	0.97	32.5	1	65;0	1	n	0.95	71.0	4	140;2	4	y	0.98	45.5	1	91;0	1	n	0.99	80.5	1	160;1	1	n	ENSMUSG00000039958.18	Etfbkmt	chr6	protein_coding	electron transfer flavoprotein beta subunit lysine methyltransferase
known_NIR_15581	chr6	149043202;149044213	149044104;149045532	+	149043202	149045532	cassetteExon	ENSMUST00000047531.16	known	0.72	84.0	33	73;95	33	y	0.72	89.5	35	90;89	35	y	0.82	314.5	68	260;369	68	y	0.71	121.0	50	95;147	50	y	0.69	195.5	88	178;213	88	y	0.72	137.5	54	114;161	54	y	0.72	170.0	66	157;183	66	y	0.65	130.5	69	115;146	69	y	0.65	73.5	40	65;82	40	y	0.76	153.5	49	140;167	49	y	0.74	92.5	32	91;94	32	y	0.76	185.0	57	160;210	57	y	ENSMUSG00000039958.18	Etfbkmt	chr6	protein_coding	electron transfer flavoprotein beta subunit lysine methyltransferase
known_NIR_15582	chr6	149044213	149045513	+	149044213	149045532	A3SS	ENSMUST00000126406.8	known	0.01	1	95	1	95	n	0.04	4	89	4	89	y	0.02	6	369	6	369	y	0.03	4	147	4	147	y	0.02	4	213	4	213	y	0.01	1	161	1	161	n	0.04	7	183	7	183	y	0.05	8	146	8	146	y	0.00	0	82	0	82	n	0.01	2	167	2	167	y	0.00	0	94	0	94	n	0.00	1	210	1	210	n	ENSMUSG00000039958.18	Etfbkmt	chr6	protein_coding	electron transfer flavoprotein beta subunit lysine methyltransferase
known_NIR_15583	chr6	149070902	149072331	-	149071002	149072331	A3SS&ES	ENSMUST00000134181.8	known	0.00	0	12	0	12	n	0.00	0	19	0	19	n	0.00	0	5	0	5	n	0.00	0	20	0	20	n	0.06	2	29	2	29	y	0.12	1	7	1	7	n	0.00	0	20	0	20	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.00	0	38	0	38	n	0.00	0	15	0	15	n	0.00	0	31	0	31	n	ENSMUSG00000068250.14	Amn1	chr6	protein_coding	antagonist of mitotic exit network 1
known_NIR_15584	chr6	149072548	149090104	-	149072548	149084892	A5SS&ES	ENSMUST00000095319.10	known	0.14	2	12	2	12	y	0.25	3	9	3	9	y	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.18	4	18	4	18	y	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.00	0	8	0	8	n	0.19	5	21	5	21	y	0.21	6	22	6	22	y	0.14	4	24	4	24	y	0.17	6	30	6	30	y	ENSMUSG00000068250.14	Amn1	chr6	protein_coding	antagonist of mitotic exit network 1
known_NIR_15585	chr6	149072548;149085036	149084892;149090104	-	149072548	149090104	cassetteExon	ENSMUST00000204681.3	known	0.80	8.0	2	12;4	2	y	0.62	5.0	3	9;1	3	n	1.00	3.5	0	6;1	0	n	1.00	8.5	0	12;5	0	n	0.71	10.0	4	18;2	4	y	1.00	1.5	0	3;0	0	n	0.88	7.5	1	5;10	1	n	1.00	4.0	0	8;0	0	n	0.70	11.5	5	21;2	5	y	0.73	16.0	6	22;10	6	y	0.79	15.5	4	24;7	4	y	0.79	22.5	6	30;15	6	y	ENSMUSG00000068250.14	Amn1	chr6	protein_coding	antagonist of mitotic exit network 1
known_NIR_15586	chr6	149085036	149090104	-	149085036	149086490	A5SS&ES	ENSMUST00000095319.10	known	0.29	4	10	4	10	y	0.08	1	12	1	12	n	0.11	1	8	1	8	n	0.26	5	14	5	14	y	0.17	2	10	2	10	y	0.00	0	6	0	6	n	0.53	10	9	10	9	y	0.00	0	5	0	5	n	0.07	2	25	2	25	y	0.40	10	15	10	15	y	0.27	7	19	7	19	y	0.35	15	28	15	28	y	ENSMUSG00000068250.14	Amn1	chr6	protein_coding	antagonist of mitotic exit network 1
known_NIR_15587	chr6	149085036	149090104	-	149085036;149086622	149086490;149090104	ES	ENSMUST00000111535.8	known	0.30	4	9.5	4	10;9	y	0.12	1	7.5	1	12;3	n	0.18	1	4.5	1	8;1	n	0.24	5	16.0	5	14;18	y	0.18	2	9.0	2	10;8	y	0.00	0	3.0	0	6;0	n	0.61	10	6.5	10	9;4	y	0.00	0	5.0	0	5;5	n	0.11	2	15.5	2	25;6	y	0.37	10	17.0	10	15;19	y	0.33	7	14.0	7	19;9	y	0.38	15	25.0	15	28;22	y	ENSMUSG00000068250.14	Amn1	chr6	protein_coding	antagonist of mitotic exit network 1
known_NIR_15588	chr6	149086622	149089734	-	149086622	149090104	A5SS	ENSMUST00000111535.8	known	0.31	4	9	4	9	y	0.25	1	3	1	3	n	0.50	1	1	1	1	n	0.22	5	18	5	18	y	0.11	1	8	1	8	n	1.00	1	0	1	0	n	0.33	2	4	2	4	n	0.29	2	5	2	5	n	0.33	3	6	3	6	n	0.21	5	19	5	19	y	0.18	2	9	2	9	y	0.21	6	22	6	22	y	ENSMUSG00000068250.14	Amn1	chr6	protein_coding	antagonist of mitotic exit network 1
known_NIR_15589	chr6	149086622	149089970	-	149086622	149090104	A5SS	ENSMUST00000111535.8	known	0.18	2	9	2	9	y	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.14	3	18	3	18	y	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.25	2	6	2	6	n	0.00	0	19	0	19	n	0.00	0	9	0	9	n	0.04	1	22	1	22	n	ENSMUSG00000068250.14	Amn1	chr6	protein_coding	antagonist of mitotic exit network 1
known_NIR_15590	chr6	149086622	149090104	-	149072548	149090104	A3SS	ENSMUST00000204681.3	known	0.82	9	2	9	2	y	0.50	3	3	3	3	n	1.00	1	0	1	0	n	1.00	18	0	18	0	n	0.67	8	4	8	4	y	-	-	-	-	-	-	0.80	4	1	4	1	n	1.00	5	0	5	0	n	0.55	6	5	6	5	y	0.76	19	6	19	6	y	0.69	9	4	9	4	y	0.79	22	6	22	6	y	ENSMUSG00000068250.14	Amn1	chr6	protein_coding	antagonist of mitotic exit network 1
known_NIR_15591	chr6	149211875	149226903	+	149219206	149226903	5pMXE	ENSMUST00000127680.2	known	0.00	0	1	0	1	n	0.50	2	2	2	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.18	3	14	3	14	y	-	-	-	-	-	-	0.00	0	9	0	9	n	ENSMUSG00000032712.17	Resf1	chr6	protein_coding	retroelement silencing factor 1
known_NIR_15592	chr6	149211875;149219206	149219133;149226903	+	149211875	149226903	cassetteExon	ENSMUST00000046689.13	known	1.00	0.5	0	0;1	0	n	0.43	1.5	2	1;2	2	n	1.00	1.5	0	1;2	0	n	1.00	1.0	0	0;2	0	n	1.00	1.5	0	1;2	0	n	0.75	3.0	1	5;1	1	n	1.00	1.5	0	0;3	0	n	1.00	2.0	0	3;1	0	n	1.00	3.0	0	2;4	0	n	0.79	11.5	3	9;14	3	y	1.00	0.5	0	1;0	0	n	1.00	6.0	0	3;9	0	n	ENSMUSG00000032712.17	Resf1	chr6	protein_coding	retroelement silencing factor 1
known_NIR_15593	chr6	149219206	149226903	+	149219206;149226298	149226230;149226903	ES	ENSMUST00000130664.8	known	0.40	1	1.5	1	1;2	n	1.00	2	0.0	2	0;0	n	0.80	2	0.5	2	1;0	n	0.67	2	1.0	2	2;0	n	0.67	2	1.0	2	0;2	n	1.00	1	0.0	1	0;0	n	0.75	3	1.0	3	1;1	n	0.50	1	1.0	1	1;1	n	0.50	4	4.0	4	2;6	y	0.97	14	0.5	14	1;0	n	0.00	0	1.0	0	0;2	n	0.78	9	2.5	9	2;3	y	ENSMUSG00000032712.17	Resf1	chr6	protein_coding	retroelement silencing factor 1
known_NIR_15594	chr6	149219206	149226903	+	149226298	149226903	5pMXE	ENSMUST00000187881.2	known	0.33	1	2	1	2	n	1.00	2	0	2	0	n	1.00	2	0	2	0	n	1.00	2	0	2	0	n	0.50	2	2	2	2	n	1.00	1	0	1	0	n	0.75	3	1	3	1	n	0.50	1	1	1	1	n	0.40	4	6	4	6	y	1.00	14	0	14	0	n	0.00	0	2	0	2	n	0.75	9	3	9	3	y	ENSMUSG00000032712.17	Resf1	chr6	protein_coding	retroelement silencing factor 1
known_NIR_15595	chr6	15728060	15740987	+	15721363	15740987	A5SS	ENSMUST00000101663.10	known	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.07	2	28	2	28	y	0.00	0	26	0	26	n	0.00	0	32	0	32	n	0.00	0	34	0	34	n	0.00	0	30	0	30	n	0.00	0	13	0	13	n	0.05	1	21	1	21	n	0.00	0	17	0	17	n	0.00	0	18	0	18	n	0.00	0	37	0	37	n	ENSMUSG00000041390.19	Mdfic	chr6	protein_coding	MyoD family inhibitor domain containing
known_NIR_15596	chr6	15738582	15740987	+	15721363	15740987	A5SS	ENSMUST00000101663.10	known	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.03	1	28	1	28	n	0.00	0	26	0	26	n	0.00	0	32	0	32	n	0.03	1	34	1	34	n	0.06	2	30	2	30	y	0.00	0	13	0	13	n	0.09	2	21	2	21	y	0.00	0	17	0	17	n	0.00	0	18	0	18	n	0.03	1	37	1	37	n	ENSMUSG00000041390.19	Mdfic	chr6	protein_coding	MyoD family inhibitor domain containing
known_NIR_15597	chr6	17464139	17487796	+	17464247	17487796	A5SS	ENSMUST00000115443.8	known	0.10	1	9	1	9	n	0.00	0	8	0	8	n	0.17	7	34	7	34	y	0.11	6	48	6	48	y	0.08	5	60	5	60	y	0.07	1	14	1	14	n	0.12	6	42	6	42	y	0.02	1	40	1	40	n	0.21	3	11	3	11	y	0.23	14	47	14	47	y	0.05	1	19	1	19	n	0.18	7	31	7	31	y	ENSMUSG00000009376.16	Met	chr6	protein_coding	met proto-oncogene
known_NIR_15598	chr6	17548838	17553238	+	17548838;17549171	17549031;17553238	ES	ENSMUST00000115443.8	known	0.28	22	57.5	22	58;57	y	0.21	13	48.5	13	41;56	y	0.16	16	86.0	16	75;97	y	0.18	23	103.0	23	97;109	y	0.16	25	131.5	25	117;146	y	0.11	6	51.0	6	41;61	y	0.09	10	104.5	10	84;125	y	0.09	6	59.0	6	50;68	y	0.15	12	66.5	12	56;77	y	0.06	8	125.0	8	106;144	y	0.15	11	62.0	11	54;70	y	0.15	19	108.5	19	99;118	y	ENSMUSG00000009376.16	Met	chr6	protein_coding	met proto-oncogene
known_NIR_15599	chr6	17657251	17660728	+	17657251	17660748	A3SS	ENSMUST00000015877.14	known	0.00	0	129	0	129	n	0.02	2	113	2	113	y	0.00	0	225	0	225	n	0.01	2	189	2	189	y	0.00	0	220	0	220	n	0.00	0	121	0	121	n	0.00	0	251	0	251	n	0.00	0	131	0	131	n	0.00	0	116	0	116	n	0.00	0	247	0	247	n	0.00	0	126	0	126	n	0.00	0	218	0	218	n	ENSMUSG00000015733.14	Capza2	chr6	protein_coding	capping protein (actin filament) muscle Z-line, alpha 2
known_NIR_15600	chr6	17848078	17852257	+	17848078	17850356	A3SS	ENSMUST00000154059.8	known	0.91	21	2	21	2	y	1.00	14	0	14	0	n	0.96	23	1	23	1	n	0.86	12	2	12	2	y	0.90	18	2	18	2	y	1.00	21	0	21	0	n	1.00	18	0	18	0	n	0.84	16	3	16	3	y	1.00	8	0	8	0	n	0.94	32	2	32	2	y	0.94	17	1	17	1	n	0.90	19	2	19	2	y	ENSMUSG00000029534.18	St7	chr6	protein_coding	suppression of tumorigenicity 7
known_NIR_15601	chr6	17848078;17850424	17850356;17852257	+	17848078	17852257	cassetteExon	ENSMUST00000115420.8	known	0.07	1.5	21	2;1	21	n	0.00	0.0	14	0;0	14	n	0.04	1.0	23	1;1	23	n	0.11	1.5	12	2;1	12	n	0.10	2.0	18	2;2	18	y	0.09	2.0	21	0;4	21	n	0.05	1.0	18	0;2	18	n	0.11	2.0	16	3;1	16	n	0.06	0.5	8	0;1	8	n	0.03	1.0	32	2;0	32	n	0.03	0.5	17	1;0	17	n	0.07	1.5	19	2;1	19	n	ENSMUSG00000029534.18	St7	chr6	protein_coding	suppression of tumorigenicity 7
known_NIR_15602	chr6	17904968	17906407	+	17905841	17906407	A5SS&ES	ENSMUST00000144743.8	known	1.00	13	0	13	0	n	1.00	19	0	19	0	n	0.96	23	1	23	1	n	0.90	9	1	9	1	n	1.00	23	0	23	0	n	1.00	18	0	18	0	n	1.00	16	0	16	0	n	0.85	11	2	11	2	y	1.00	15	0	15	0	n	1.00	15	0	15	0	n	1.00	13	0	13	0	n	1.00	14	0	14	0	n	ENSMUSG00000029534.18	St7	chr6	protein_coding	suppression of tumorigenicity 7
known_NIR_15603	chr6	17922138	17930765	+	17922123	17930765	A5SS	ENSMUST00000115419.8	known	1.00	23	0	23	0	n	0.91	20	2	20	2	y	1.00	26	0	26	0	n	1.00	13	0	13	0	n	1.00	25	0	25	0	n	1.00	20	0	20	0	n	1.00	25	0	25	0	n	0.89	17	2	17	2	y	0.92	12	1	12	1	n	1.00	19	0	19	0	n	1.00	19	0	19	0	n	1.00	18	0	18	0	n	ENSMUSG00000029534.18	St7	chr6	protein_coding	suppression of tumorigenicity 7
known_NIR_15604	chr6	21772935	21799878	-	21795720	21799878	3pMXE	ENSMUST00000123116.8	known	0.02	4	226	4	226	y	0.00	1	219	1	219	n	0.02	5	250	5	250	y	0.02	6	333	6	333	y	0.01	6	396	6	396	y	0.03	4	142	4	142	y	0.01	4	329	4	329	y	0.00	0	184	0	184	n	0.01	4	274	4	274	y	0.02	10	454	10	454	y	0.02	6	310	6	310	y	0.02	8	398	8	398	y	ENSMUSG00000029669.15	Tspan12	chr6	protein_coding	tetraspanin 12
known_NIR_15605	chr6	21772935;21795720	21795577;21799878	-	21772935	21799878	cassetteExon	ENSMUST00000120965.8	known	0.98	236.0	4	246;226	4	y	1.00	208.0	1	197;219	1	n	0.98	255.5	5	261;250	5	y	0.98	343.5	6	354;333	6	y	0.98	375.5	6	355;396	6	y	0.97	148.0	4	154;142	4	y	0.99	333.0	4	337;329	4	y	1.00	172.5	0	161;184	0	n	0.99	277.5	4	281;274	4	y	0.98	441.0	10	428;454	10	y	0.98	310.5	6	311;310	6	y	0.98	393.0	8	388;398	8	y	ENSMUSG00000029669.15	Tspan12	chr6	protein_coding	tetraspanin 12
known_NIR_15606	chr6	21851144	21851825	-	21851144	21852011	A5SS	ENSMUST00000120965.8	known	0.00	0	134	0	134	n	0.00	0	117	0	117	n	0.00	0	154	0	154	n	0.00	1	236	1	236	n	0.00	1	255	1	255	n	0.00	0	113	0	113	n	0.00	0	203	0	203	n	0.01	2	158	2	158	y	0.00	0	179	0	179	n	0.00	1	276	1	276	n	0.01	3	204	3	204	y	0.00	0	248	0	248	n	ENSMUSG00000029669.15	Tspan12	chr6	protein_coding	tetraspanin 12
known_NIR_15607	chr6	21851144	21851936	-	21851144	21852011	A5SS	ENSMUST00000120965.8	known	0.00	0	134	0	134	n	0.00	0	117	0	117	n	0.00	0	154	0	154	n	0.00	0	236	0	236	n	0.00	0	255	0	255	n	0.00	0	113	0	113	n	0.00	0	203	0	203	n	0.00	0	158	0	158	n	0.00	0	179	0	179	n	0.01	2	276	2	276	y	0.00	1	204	1	204	n	0.00	0	248	0	248	n	ENSMUSG00000029669.15	Tspan12	chr6	protein_coding	tetraspanin 12
known_NIR_15608	chr6	21950108	21952091	+	21950108	21952128	A3SS	ENSMUST00000031680.10	known	0.00	0	15	0	15	n	0.09	1	10	1	10	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	15	0	15	n	0.00	0	3	0	3	n	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.18	2	9	2	9	y	0.00	0	8	0	8	n	0.00	0	24	0	24	n	ENSMUSG00000029670.13	Ing3	chr6	protein_coding	inhibitor of growth family, member 3
known_NIR_15609	chr6	21967697	21968917	+	21967697	21968884	A3SS	ENSMUST00000031680.10	known	0.22	4	14	4	14	y	0.00	0	13	0	13	n	0.00	0	15	0	15	n	0.00	0	8	0	8	n	0.12	2	15	2	15	y	0.20	1	4	1	4	n	0.00	0	18	0	18	n	0.09	1	10	1	10	n	0.12	1	7	1	7	n	0.00	0	15	0	15	n	0.20	2	8	2	8	y	0.04	1	27	1	27	n	ENSMUSG00000029670.13	Ing3	chr6	protein_coding	inhibitor of growth family, member 3
known_NIR_15610	chr6	21987058	22009024	+	21987058	22016902	A3SS	ENSMUST00000115383.9	known	0.04	1	25	1	25	n	0.04	1	25	1	25	n	0.05	3	52	3	52	y	0.02	1	62	1	62	n	0.00	0	63	0	63	n	0.02	1	43	1	43	n	0.00	0	40	0	40	n	0.00	0	51	0	51	n	0.00	0	30	0	30	n	0.00	0	62	0	62	n	0.06	2	33	2	33	y	0.00	0	43	0	43	n	ENSMUSG00000062980.16	Cped1	chr6	protein_coding	cadherin-like and PC-esterase domain containing 1
known_NIR_15611	chr6	22017085	22059876	+	22017085;22051398	22051292;22059876	ES	ENSMUST00000115383.9	known	0.20	4	16.5	4	8;25	y	0.11	2	16.5	2	19;14	y	0.15	9	52.5	9	52;53	y	0.06	3	49.0	3	45;53	y	0.06	4	65.0	4	72;58	y	0.14	7	44.0	7	30;58	y	0.05	2	34.5	2	28;41	y	0.05	2	37.5	2	29;46	y	0.08	2	22.5	2	23;22	y	0.15	7	38.5	7	39;38	y	0.04	1	25.5	1	33;18	n	0.08	2	23.5	2	18;29	y	ENSMUSG00000062980.16	Cped1	chr6	protein_coding	cadherin-like and PC-esterase domain containing 1
known_NIR_15612	chr6	22026048	22051292	+	22017085	22051292	A5SS	ENSMUST00000115383.9	known	0.20	2	8	2	8	y	0.05	1	19	1	19	n	0.09	5	52	5	52	y	0.08	4	45	4	45	y	0.06	5	72	5	72	y	0.25	10	30	10	30	y	0.12	4	28	4	28	y	0.09	3	29	3	29	y	0.08	2	23	2	23	y	0.07	3	39	3	39	y	0.08	3	33	3	33	y	0.22	5	18	5	18	y	ENSMUSG00000062980.16	Cped1	chr6	protein_coding	cadherin-like and PC-esterase domain containing 1
known_NIR_15613	chr6	22059951	22069340	+	22059951	22085029	A3SS	ENSMUST00000115383.9	known	0.00	0	26	0	26	n	0.00	0	17	0	17	n	0.00	0	55	0	55	n	0.02	1	52	1	52	n	0.00	0	66	0	66	n	0.00	0	61	0	61	n	0.09	4	41	4	41	y	0.00	0	42	0	42	n	0.00	0	24	0	24	n	0.00	0	56	0	56	n	0.00	0	33	0	33	n	0.00	0	46	0	46	n	ENSMUSG00000062980.16	Cped1	chr6	protein_coding	cadherin-like and PC-esterase domain containing 1
known_NIR_15614	chr6	22328677	22329176	-	22328677	22329578	A5SS	ENSMUST00000165576.8	known	0.00	0	51	0	51	n	0.04	2	45	2	45	y	0.00	0	66	0	66	n	0.00	0	63	0	63	n	0.00	0	76	0	76	n	0.00	0	56	0	56	n	0.00	0	63	0	63	n	0.00	0	53	0	53	n	0.10	3	28	3	28	y	0.03	3	91	3	91	y	0.00	0	73	0	73	n	0.03	2	64	2	64	y	ENSMUSG00000029672.17	Fam3c	chr6	protein_coding	family with sequence similarity 3, member C
known_NIR_15615	chr6	22339376	22355994	-	22339376;22343318	22343265;22355994	ES	ENSMUST00000165576.8	known	0.00	0	23.0	0	26;20	n	0.00	0	28.0	0	32;24	n	0.00	0	29.5	0	35;24	n	0.00	0	33.0	0	33;33	n	0.04	2	48.0	2	51;45	y	0.00	0	37.5	0	32;43	n	0.00	0	41.5	0	34;49	n	0.00	0	23.5	0	25;22	n	0.00	0	26.5	0	24;29	n	0.00	0	41.0	0	40;42	n	0.00	0	48.0	0	56;40	n	0.00	0	39.5	0	42;37	n	ENSMUSG00000029672.17	Fam3c	chr6	protein_coding	family with sequence similarity 3, member C
known_NIR_15616	chr6	22343318	22343665	-	22343318	22355994	A5SS	ENSMUST00000165576.8	known	0.20	5	20	5	20	y	0.08	2	24	2	24	y	0.04	1	24	1	24	n	0.20	8	33	8	33	y	0.10	5	45	5	45	y	0.00	0	43	0	43	n	0.06	3	49	3	49	y	0.15	4	22	4	22	y	0.12	4	29	4	29	y	0.12	6	42	6	42	y	0.13	6	40	6	40	y	0.24	12	37	12	37	y	ENSMUSG00000029672.17	Fam3c	chr6	protein_coding	family with sequence similarity 3, member C
known_NIR_15617	chr6	23094310	23097142	-	23094310;23096892	23096825;23097142	ES	ENSMUST00000031707.14	known	0.03	8	311.5	8	312;311	y	0.04	8	194.5	8	187;202	y	0.01	2	297.5	2	285;310	y	0.03	16	447.5	16	434;461	y	0.02	8	382.0	8	392;372	y	0.00	0	210.0	0	195;225	n	0.04	13	327.0	13	312;342	y	0.01	3	233.5	3	227;240	y	0.02	7	278.5	7	293;264	y	0.03	14	455.0	14	464;446	y	0.02	6	255.0	6	262;248	y	0.02	12	563.0	12	588;538	y	ENSMUSG00000029695.14	Aass	chr6	protein_coding	aminoadipate-semialdehyde synthase
known_NIR_15618	chr6	23263888	23269245	-	23263715	23269245	A3SS	ENSMUST00000166458.9	known	0.03	1	37	1	37	n	0.11	4	33	4	33	y	0.11	3	24	3	24	y	0.00	0	37	0	37	n	0.00	0	35	0	35	n	0.04	1	24	1	24	n	0.00	0	39	0	39	n	0.06	2	31	2	31	y	0.00	0	22	0	22	n	0.06	3	45	3	45	y	0.06	2	31	2	31	y	0.05	2	35	2	35	y	ENSMUSG00000017978.19	Cadps2	chr6	protein_coding	Ca2+-dependent activator protein for secretion 2
known_NIR_15619	chr6	23314206;23320946	23320932;23321705	-	23314206	23321705	cassetteExon	ENSMUST00000166458.9	known	0.89	39.5	5	38;41	5	y	0.93	26.5	2	32;21	2	y	0.88	44.0	6	46;42	6	y	1.00	21.5	0	22;21	0	n	0.96	42.5	2	42;43	2	y	0.79	23.0	6	23;23	6	y	0.95	40.0	2	40;40	2	y	0.88	14.0	2	12;16	2	y	1.00	22.0	0	23;21	0	n	0.93	38.5	3	39;38	3	y	1.00	31.0	0	33;29	0	n	0.86	24.0	4	25;23	4	y	ENSMUSG00000017978.19	Cadps2	chr6	protein_coding	Ca2+-dependent activator protein for secretion 2
known_NIR_15620	chr6	23355926	23382880	-	23355926;23381076	23381056;23382880	ES	ENSMUST00000166458.9	known	0.77	12	3.5	12	4;3	y	0.95	26	1.5	26	3;0	n	0.87	27	4.0	27	4;4	y	0.88	28	4.0	28	4;4	y	0.90	30	3.5	30	3;4	y	0.90	14	1.5	14	2;1	n	0.96	26	1.0	26	1;1	n	0.95	18	1.0	18	1;1	n	0.77	15	4.5	15	5;4	y	1.00	29	0.0	29	0;0	n	0.86	24	4.0	24	4;4	y	0.65	12	6.5	12	7;6	y	ENSMUSG00000017978.19	Cadps2	chr6	protein_coding	Ca2+-dependent activator protein for secretion 2
known_NIR_15621	chr6	23410041	23410741	-	23390485	23410741	A3SS	ENSMUST00000166458.9	known	0.17	2	10	2	10	y	0.08	2	24	2	24	y	0.03	1	29	1	29	n	0.00	0	16	0	16	n	0.05	2	36	2	36	y	0.12	4	30	4	30	y	0.12	4	30	4	30	y	0.00	0	25	0	25	n	0.16	3	16	3	16	y	0.03	1	34	1	34	n	0.05	1	21	1	21	n	0.14	6	38	6	38	y	ENSMUSG00000017978.19	Cadps2	chr6	protein_coding	Ca2+-dependent activator protein for secretion 2
known_NIR_15622	chr6	24519256	24527272	-	24519256	24522658	5pMXE	ENSMUST00000132588.8	known	0.05	24	473	24	473	y	0.06	28	423	28	423	y	0.06	20	342	20	342	y	0.02	8	420	8	420	y	0.05	21	419	21	419	y	0.05	12	223	12	223	y	0.06	39	603	39	603	y	0.07	15	205	15	205	y	0.05	22	410	22	410	y	0.07	43	605	43	605	y	0.05	28	537	28	537	y	0.06	32	502	32	502	y	ENSMUSG00000023089.13	Ndufa5	chr6	protein_coding	NADH:ubiquinone oxidoreductase subunit A5
known_NIR_15623	chr6	24519256;24522774	24522658;24527272	-	24519256	24527272	cassetteExon	ENSMUST00000118558.5	known	0.95	427.0	24	473;381	24	y	0.93	387.5	28	423;352	28	y	0.94	331.5	20	342;321	20	y	0.98	394.5	8	420;369	8	y	0.95	436.5	21	419;454	21	y	0.94	205.5	12	223;188	12	y	0.94	579.5	39	603;556	39	y	0.93	197.5	15	205;190	15	y	0.95	387.0	22	410;364	22	y	0.93	588.5	43	605;572	43	y	0.94	474.5	28	537;412	28	y	0.94	493.0	32	502;484	32	y	ENSMUSG00000023089.13	Ndufa5	chr6	protein_coding	NADH:ubiquinone oxidoreductase subunit A5
known_NIR_15624	chr6	24527316	24527459	-	24527316	24527525	A5SS	ENSMUST00000118558.5	known	0.02	3	180	3	180	y	0.04	8	176	8	176	y	0.01	1	188	1	188	n	0.01	2	171	2	171	y	0.00	1	231	1	231	n	0.00	0	94	0	94	n	0.01	4	305	4	305	y	0.00	0	86	0	86	n	0.01	3	201	3	201	y	0.01	2	292	2	292	y	0.01	2	211	2	211	y	0.02	4	240	4	240	y	ENSMUSG00000023089.13	Ndufa5	chr6	protein_coding	NADH:ubiquinone oxidoreductase subunit A5
known_NIR_15625	chr6	24637898	24664535	-	24637782	24664535	A3SS	ENSMUST00000031695.15	known	0.00	0	41	0	41	n	0.00	0	22	0	22	n	0.00	0	83	0	83	n	0.00	0	67	0	67	n	0.00	0	78	0	78	n	0.03	1	36	1	36	n	0.00	0	64	0	64	n	0.00	0	47	0	47	n	0.04	2	45	2	45	y	0.00	0	67	0	67	n	0.00	0	49	0	49	n	0.00	0	78	0	78	n	ENSMUSG00000029684.15	Wasl	chr6	protein_coding	WASP like actin nucleation promoting factor
known_NIR_15626	chr6	28520264	28526052	+	28520264	28523726	3pMXE	ENSMUST00000168362.2	known	0.00	0	138	0	138	n	0.00	0	87	0	87	n	0.01	3	284	3	284	y	0.00	0	176	0	176	n	0.00	0	266	0	266	n	0.01	1	185	1	185	n	0.01	1	127	1	127	n	0.00	0	154	0	154	n	0.00	0	130	0	130	n	0.02	3	184	3	184	y	0.00	0	120	0	120	n	0.00	0	208	0	208	n	ENSMUSG00000001424.15	Snd1	chr6	protein_coding	staphylococcal nuclease and tudor domain containing 1
known_NIR_15627	chr6	28520264;28523804	28523726;28526052	+	28520264	28526052	cassetteExon	ENSMUST00000164915.8	known	1.00	152.0	0	138;166	0	n	1.00	92.0	0	87;97	0	n	0.99	300.0	3	284;316	3	y	1.00	201.0	0	176;226	0	n	1.00	272.0	0	266;278	0	n	0.99	189.5	1	185;194	1	n	0.99	157.5	1	127;188	1	n	1.00	187.5	0	154;221	0	n	1.00	142.5	0	130;155	0	n	0.98	197.0	3	184;210	3	y	1.00	142.5	0	120;165	0	n	1.00	232.0	0	208;256	0	n	ENSMUSG00000001424.15	Snd1	chr6	protein_coding	staphylococcal nuclease and tudor domain containing 1
known_NIR_15628	chr6	28875048	28880196	+	28875048	28876141	3pMXE	ENSMUST00000164915.8	known	1.00	231	0	231	0	n	1.00	226	1	226	1	n	1.00	415	2	415	2	y	1.00	288	0	288	0	n	1.00	386	0	386	0	n	1.00	235	0	235	0	n	1.00	247	0	247	0	n	1.00	213	0	213	0	n	1.00	211	0	211	0	n	1.00	274	0	274	0	n	1.00	276	0	276	0	n	1.00	315	0	315	0	n	ENSMUSG00000001424.15	Snd1	chr6	protein_coding	staphylococcal nuclease and tudor domain containing 1
known_NIR_15629	chr6	29125523	29128428	-	29125523;29127899	29127797;29128428	ES	ENSMUST00000007993.16	known	0.00	0	57.0	0	58;56	n	0.00	0	42.0	0	43;41	n	0.00	0	64.0	0	59;69	n	0.00	0	51.0	0	52;50	n	0.04	2	52.5	2	55;50	y	0.00	0	34.0	0	39;29	n	0.00	0	51.5	0	43;60	n	0.00	0	37.5	0	36;39	n	0.00	0	41.0	0	36;46	n	0.00	0	62.5	0	64;61	n	0.00	0	59.0	0	51;67	n	0.02	1	50.0	1	51;49	n	ENSMUSG00000029701.16	Rbm28	chr6	protein_coding	RNA binding motif protein 28
known_NIR_15630	chr6	29356696	29361559	+	29356696	29361293	A3SS&ES	ENSMUST00000173694.5	known	0.44	41	53	41	53	y	0.36	27	48	27	48	y	0.33	131	265	131	265	y	0.38	54	87	54	87	y	0.40	83	124	83	124	y	0.39	82	130	82	130	y	0.40	67	101	67	101	y	0.33	71	146	71	146	y	0.51	39	38	39	38	y	0.58	86	63	86	63	y	0.53	39	34	39	34	y	0.48	86	92	86	92	y	ENSMUSG00000029767.17	Calu	chr6	protein_coding	calumenin
known_NIR_15631	chr6	29356696;29361486	29361293;29361559	+	29356696	29361559	cassetteExon	ENSMUST00000090481.14	known	0.39	26.5	41	53;0	41	n	0.48	24.5	27	48;1	27	n	0.50	133.0	131	265;1	131	n	0.45	43.5	54	87;0	54	n	0.43	63.5	83	124;3	83	y	0.44	65.0	82	130;0	82	n	0.43	50.5	67	101;0	67	n	0.51	75.0	71	146;4	71	y	0.33	19.0	39	38;0	39	n	0.27	32.5	86	63;2	86	y	0.30	17.0	39	34;0	39	n	0.35	47.0	86	92;2	86	y	ENSMUSG00000029767.17	Calu	chr6	protein_coding	calumenin
known_NIR_15632	chr6	29356696;29361752	29361559;29366039	+	29356696;29361486	29361293;29366039	MXE	ENSMUST00000172974.8	known	0.50	56.5	57.0	41;72	53;61	y	0.36	31.0	54.0	27;35	48;60	y	0.37	154.5	263.0	131;178	265;261	y	0.43	65.5	86.5	54;77	87;86	y	0.47	106.0	120.5	83;129	124;117	y	0.40	100.5	149.0	82;119	130;168	y	0.45	85.0	106.0	67;103	101;111	y	0.36	95.0	166.0	71;119	146;186	y	0.53	56.0	49.5	39;73	38;61	y	0.53	87.5	78.5	86;89	63;94	y	0.51	48.5	46.5	39;58	34;59	y	0.47	81.5	90.5	86;77	92;89	y	ENSMUSG00000029767.17	Calu	chr6	protein_coding	calumenin
known_NIR_15633	chr6	29361486;29361752	29361559;29366039	+	29361486	29366039	cassetteExon	ENSMUST00000172974.8	known	0.37	36.0	61	0;72	61	n	0.23	18.0	60	1;35	60	n	0.26	89.5	261	1;178	261	n	0.31	38.5	86	0;77	86	n	0.36	66.0	117	3;129	117	y	0.26	59.5	168	0;119	168	n	0.32	51.5	111	0;103	111	n	0.25	61.5	186	4;119	186	y	0.37	36.5	61	0;73	61	n	0.33	45.5	94	2;89	94	y	0.33	29.0	59	0;58	59	n	0.31	39.5	89	2;77	89	y	ENSMUSG00000029767.17	Calu	chr6	protein_coding	calumenin
known_NIR_15634	chr6	29468166	29470066	+	29467973	29470066	A5SS	ENSMUST00000004396.13	known	0.00	1	397	1	397	n	0.00	1	474	1	474	n	0.00	1	452	1	452	n	0.00	1	377	1	377	n	0.01	7	471	7	471	y	0.00	0	279	0	279	n	0.01	5	528	5	528	y	0.01	2	270	2	270	y	0.01	4	386	4	386	y	0.00	2	512	2	512	y	0.01	5	502	5	502	y	0.00	0	492	0	492	n	ENSMUSG00000004285.13	Atp6v1f	chr6	protein_coding	ATPase, H+ transporting, lysosomal V1 subunit F
known_NIR_15635	chr6	29468166;29469225	29468966;29470066	+	29468166	29470066	cassetteExon	ENSMUST00000143101.4	known	0.50	1.0	1	0;2	1	n	0.60	1.5	1	0;3	1	n	0.60	1.5	1	2;1	1	n	0.50	1.0	1	1;1	1	n	0.26	2.5	7	0;5	7	n	1.00	1.0	0	0;2	0	n	0.33	2.5	5	4;1	5	n	0.50	2.0	2	3;1	2	n	0.20	1.0	4	0;2	4	n	0.60	3.0	2	3;3	2	n	0.47	4.5	5	3;6	5	y	1.00	2.0	0	1;3	0	n	ENSMUSG00000004285.13	Atp6v1f	chr6	protein_coding	ATPase, H+ transporting, lysosomal V1 subunit F
known_NIR_15636	chr6	29469225	29470066	+	29467973	29470066	A5SS	ENSMUST00000004396.13	known	0.01	2	397	2	397	y	0.01	3	474	3	474	y	0.00	1	452	1	452	n	0.00	1	377	1	377	n	0.01	5	471	5	471	y	0.01	2	279	2	279	y	0.00	1	528	1	528	n	0.00	1	270	1	270	n	0.01	2	386	2	386	y	0.01	3	512	3	512	y	0.01	6	502	6	502	y	0.01	3	492	3	492	y	ENSMUSG00000004285.13	Atp6v1f	chr6	protein_coding	ATPase, H+ transporting, lysosomal V1 subunit F
known_NIR_15637	chr6	29484715	29485002	-	29484715;29484921	29484810;29485002	ES	ENSMUST00000159479.8	known	0.09	1	10.5	1	16;5	n	0.20	2	8.0	2	10;6	y	0.38	3	5.0	3	5;5	y	0.35	3	5.5	3	5;6	y	0.25	2	6.0	2	10;2	y	0.00	0	2.0	0	4;0	n	0.25	2	6.0	2	8;4	y	0.14	1	6.0	1	9;3	n	0.00	0	8.0	0	9;7	n	0.00	0	3.0	0	4;2	n	0.09	1	10.0	1	9;11	n	0.18	2	9.0	2	11;7	y	ENSMUSG00000059022.16	Kcp	chr6	protein_coding	kielin/chordin-like protein
known_NIR_15638	chr6	29554961	29555152	-	29554979	29555152	A3SS	ENSMUST00000115251.8	known	0.96	67	3	67	3	y	0.97	71	2	71	2	y	0.96	70	3	70	3	y	0.99	75	1	75	1	n	0.98	89	2	89	2	y	1.00	42	0	42	0	n	0.99	92	1	92	1	n	1.00	35	0	35	0	n	1.00	67	0	67	0	n	0.98	79	2	79	2	y	1.00	89	0	89	0	n	0.96	89	4	89	4	y	ENSMUSG00000012535.15	Tnpo3	chr6	protein_coding	transportin 3
known_NIR_15639	chr6	29589228;29599697	29599539;29609365	-	29589228	29609365	cassetteExon	ENSMUST00000115251.8	known	0.02	0.5	24	1;0	24	n	0.02	0.5	25	1;0	25	n	0.07	4.0	50	7;1	50	n	0.08	3.5	39	3;4	39	y	0.08	4.5	51	3;6	51	y	0.27	5.5	15	7;4	15	y	0.11	3.5	29	6;1	29	n	0.07	2.0	28	2;2	28	y	0.02	0.5	24	1;0	24	n	0.02	1.0	55	1;1	55	n	0.05	1.5	27	2;1	27	n	0.03	1.0	31	1;1	31	n	ENSMUSG00000012535.15	Tnpo3	chr6	protein_coding	transportin 3
known_NIR_15640	chr6	29709997	29710589	+	29709997	29710586	A3SS	ENSMUST00000046750.14	known	0.44	26	33	26	33	y	0.39	14	22	14	22	y	0.18	8	36	8	36	y	0.25	15	44	15	44	y	0.30	18	42	18	42	y	0.18	4	18	4	18	y	0.35	23	43	23	43	y	0.33	10	20	10	20	y	0.40	14	21	14	21	y	0.27	20	54	20	54	y	0.30	14	33	14	33	y	0.36	21	37	21	37	y	ENSMUSG00000001763.15	Tspan33	chr6	protein_coding	tetraspanin 33
known_NIR_15641	chr6	30088987	30089911	+	30088987	30089914	A3SS	ENSMUST00000115212.8	known	0.25	1	3	1	3	n	0.83	5	1	5	1	n	0.60	9	6	9	6	y	0.64	9	5	9	5	y	0.63	12	7	12	7	y	0.50	4	4	4	4	n	0.83	15	3	15	3	y	1.00	6	0	6	0	n	0.67	2	1	2	1	n	0.56	5	4	5	4	n	0.71	5	2	5	2	n	0.86	6	1	6	1	n	ENSMUSG00000058440.15	Nrf1	chr6	protein_coding	nuclear respiratory factor 1
known_NIR_15642	chr6	30090145	30095339	+	30090145	30090268	3pMXE	ENSMUST00000130096.2	known	0.40	6	9	6	9	y	0.75	3	1	3	1	n	0.94	17	1	17	1	n	0.64	9	5	9	5	y	0.45	10	12	10	12	y	1.00	9	0	9	0	n	0.89	17	2	17	2	y	0.56	5	4	5	4	n	0.50	6	6	6	6	y	0.94	17	1	17	1	n	0.56	5	4	5	4	n	0.53	8	7	8	7	y	ENSMUSG00000058440.15	Nrf1	chr6	protein_coding	nuclear respiratory factor 1
known_NIR_15643	chr6	30090145;30090303	30090268;30095339	+	30090145	30095339	cassetteExon	ENSMUST00000115212.8	known	0.60	9.0	6	9;9	6	y	0.14	0.5	3	1;0	3	n	0.13	2.5	17	1;4	17	n	0.44	7.0	9	5;9	9	y	0.52	11.0	10	12;10	10	y	0.05	0.5	9	0;1	9	n	0.19	4.0	17	2;6	17	y	0.41	3.5	5	4;3	5	y	0.48	5.5	6	6;5	6	y	0.17	3.5	17	1;6	17	n	0.47	4.5	5	4;5	5	y	0.43	6.0	8	7;5	8	y	ENSMUSG00000058440.15	Nrf1	chr6	protein_coding	nuclear respiratory factor 1
known_NIR_15644	chr6	30126358	30140215	+	30126358	30144580	A3SS	ENSMUST00000115206.8	known	0.40	2	3	2	3	n	0.75	3	1	3	1	n	0.44	4	5	4	5	n	0.60	3	2	3	2	n	0.20	2	8	2	8	y	0.20	1	4	1	4	n	0.33	3	6	3	6	n	0.33	2	4	2	4	n	0.20	1	4	1	4	n	0.29	5	12	5	12	y	0.31	4	9	4	9	y	0.14	1	6	1	6	n	ENSMUSG00000058440.15	Nrf1	chr6	protein_coding	nuclear respiratory factor 1
known_NIR_15645	chr6	30126358	30144580	+	30126358	30151513	A3SS	ENSMUST00000115212.8	known	0.25	3	9	3	9	y	0.07	1	13	1	13	n	0.24	5	16	5	16	y	0.17	2	10	2	10	y	0.31	8	18	8	18	y	0.27	4	11	4	11	y	0.32	6	13	6	13	y	0.44	4	5	4	5	n	0.24	4	13	4	13	y	0.48	12	13	12	13	y	0.45	9	11	9	11	y	0.21	6	22	6	22	y	ENSMUSG00000058440.15	Nrf1	chr6	protein_coding	nuclear respiratory factor 1
known_NIR_15646	chr6	30126358	30151513	+	30126358	30140215	3pMXE	ENSMUST00000132866.2	known	0.82	9	2	9	2	y	0.81	13	3	13	3	y	0.80	16	4	16	4	y	0.77	10	3	10	3	y	0.90	18	2	18	2	y	0.92	11	1	11	1	n	0.81	13	3	13	3	y	0.71	5	2	5	2	n	0.93	13	1	13	1	n	0.72	13	5	13	5	y	0.73	11	4	11	4	y	0.96	22	1	22	1	n	ENSMUSG00000058440.15	Nrf1	chr6	protein_coding	nuclear respiratory factor 1
known_NIR_15647	chr6	30221795;30241423	30241371;30260928	-	30221795	30260928	cassetteExon	ENSMUST00000094543.3	known	0.90	26.0	3	52;0	3	n	0.89	15.5	2	31;0	2	n	0.81	29.0	7	58;0	7	n	0.96	52.0	2	104;0	2	n	0.95	57.0	3	114;0	3	n	0.96	22.0	1	43;1	1	n	0.94	46.5	3	93;0	3	n	0.85	22.5	4	45;0	4	n	0.96	46.5	2	93;0	2	n	0.92	54.5	5	109;0	5	n	0.91	43.0	4	86;0	4	n	0.97	71.0	2	139;3	2	y	ENSMUSG00000039159.17	Ube2h	chr6	protein_coding	ubiquitin-conjugating enzyme E2H
known_NIR_15648	chr6	30241423	30260928	-	30241423;30242576	30242537;30260928	ES	ENSMUST00000102993.10	known	0.00	0	48.5	0	53;44	n	0.00	0	34.5	0	33;36	n	0.00	0	62.0	0	58;66	n	0.00	0	92.5	0	93;92	n	0.00	0	107.5	0	111;104	n	0.04	1	27.5	1	29;26	n	0.00	0	79.0	0	77;81	n	0.00	0	36.5	0	29;44	n	0.00	0	65.5	0	64;67	n	0.00	0	87.5	0	88;87	n	0.00	0	78.0	0	81;75	n	0.03	3	104.5	3	98;111	y	ENSMUSG00000039159.17	Ube2h	chr6	protein_coding	ubiquitin-conjugating enzyme E2H
known_NIR_15649	chr6	30242576	30260928	-	30221795	30260928	A3SS	ENSMUST00000094543.3	known	0.94	44	3	44	3	y	0.95	36	2	36	2	y	0.90	66	7	66	7	y	0.98	92	2	92	2	y	0.97	104	3	104	3	y	0.96	26	1	26	1	n	0.96	81	3	81	3	y	0.92	44	4	44	4	y	0.97	67	2	67	2	y	0.95	87	5	87	5	y	0.95	75	4	75	4	y	0.98	111	2	111	2	y	ENSMUSG00000039159.17	Ube2h	chr6	protein_coding	ubiquitin-conjugating enzyme E2H
known_NIR_15650	chr6	30374958	30375938	-	30374918	30375938	A3SS	ENSMUST00000080812.14	known	0.00	0	14	0	14	n	0.00	0	15	0	15	n	0.00	0	20	0	20	n	0.00	0	30	0	30	n	0.00	0	29	0	29	n	0.00	0	11	0	11	n	0.00	0	26	0	26	n	0.00	0	13	0	13	n	0.04	1	27	1	27	n	0.07	2	28	2	28	y	0.00	0	27	0	27	n	0.00	0	23	0	23	n	ENSMUSG00000039130.19	Zc3hc1	chr6	protein_coding	zinc finger, C3HC type 1
known_NIR_15651	chr6	30376061	30381780	-	30376065	30381780	A3SS	ENSMUST00000080812.14	known	0.00	0	23	0	23	n	0.00	0	14	0	14	n	0.00	0	19	0	19	n	0.10	2	18	2	18	y	0.00	0	19	0	19	n	0.00	0	8	0	8	n	0.00	0	30	0	30	n	0.00	0	11	0	11	n	0.00	0	25	0	25	n	0.00	0	32	0	32	n	0.00	0	26	0	26	n	0.00	0	26	0	26	n	ENSMUSG00000039130.19	Zc3hc1	chr6	protein_coding	zinc finger, C3HC type 1
known_NIR_15652	chr6	30387531	30390840	-	30387531	30390856	A5SS	ENSMUST00000080812.14	known	0.00	0	31	0	31	n	0.00	0	19	0	19	n	0.00	0	27	0	27	n	0.00	0	26	0	26	n	0.00	0	27	0	27	n	0.00	0	20	0	20	n	0.00	0	28	0	28	n	0.00	0	30	0	30	n	0.00	0	20	0	20	n	0.00	0	22	0	22	n	0.07	2	27	2	27	y	0.00	0	31	0	31	n	ENSMUSG00000039130.19	Zc3hc1	chr6	protein_coding	zinc finger, C3HC type 1
known_NIR_15653	chr6	30402149	30439643	+	30427794	30439643	5pMXE	ENSMUST00000135566.2	known	0.58	15	11	15	11	y	0.65	15	8	15	8	y	0.53	25	22	25	22	y	0.64	27	15	27	15	y	0.62	35	21	35	21	y	0.70	19	8	19	8	y	0.44	19	24	19	24	y	0.67	24	12	24	12	y	0.64	9	5	9	5	y	0.57	25	19	25	19	y	0.69	11	5	11	5	y	0.45	17	21	17	21	y	ENSMUSG00000029775.15	Klhdc10	chr6	protein_coding	kelch domain containing 10
known_NIR_15654	chr6	30402149;30427794	30427708;30439643	+	30402149	30439643	cassetteExon	ENSMUST00000068240.13	known	0.39	9.5	15	8;11	15	y	0.29	6.0	15	4;8	15	y	0.43	19.0	25	16;22	25	y	0.33	13.5	27	12;15	27	y	0.31	15.5	35	10;21	35	y	0.25	6.5	19	5;8	19	y	0.49	18.5	19	13;24	19	y	0.29	10.0	24	8;12	24	y	0.33	4.5	9	4;5	9	y	0.37	14.5	25	10;19	25	y	0.31	5.0	11	5;5	11	y	0.55	20.5	17	20;21	17	y	ENSMUSG00000029775.15	Klhdc10	chr6	protein_coding	kelch domain containing 10
known_NIR_15655	chr6	30439864	30444426	+	30439864	30441776	3pMXE	ENSMUST00000135566.2	known	0.00	0	95	0	95	n	0.00	0	49	0	49	n	0.03	3	110	3	110	y	0.04	4	91	4	91	y	0.01	2	164	2	164	y	0.00	0	99	0	99	n	0.04	4	107	4	107	y	0.03	3	96	3	96	y	0.01	1	76	1	76	n	0.00	0	103	0	103	n	0.03	2	61	2	61	y	0.00	0	96	0	96	n	ENSMUSG00000029775.15	Klhdc10	chr6	protein_coding	kelch domain containing 10
known_NIR_15656	chr6	30439864	30444426	+	30439864;30441930	30441776;30444426	ES	ENSMUST00000068240.13	known	0.00	0	72.5	0	95;50	n	0.00	0	42.5	0	49;36	n	0.03	3	109.5	3	110;109	y	0.05	4	76.5	4	91;62	y	0.01	2	136.5	2	164;109	y	0.00	0	90.5	0	99;82	n	0.04	4	90.0	4	107;73	y	0.03	3	91.5	3	96;87	y	0.02	1	61.5	1	76;47	n	0.00	0	88.5	0	103;74	n	0.04	2	49.0	2	61;37	y	0.00	0	88.0	0	96;80	n	ENSMUSG00000029775.15	Klhdc10	chr6	protein_coding	kelch domain containing 10
known_NIR_15657	chr6	30505973	30508453	-	30505973	30506785	A5SS	ENSMUST00000150480.2	known	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.00	0	26	0	26	n	0.00	0	2	0	2	n	0.00	0	15	0	15	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.10	2	19	2	19	y	ENSMUSG00000029782.21	Tmem209	chr6	protein_coding	transmembrane protein 209
known_NIR_15658	chr6	30505973	30508453	-	30505973;30506916	30506785;30508453	ES	ENSMUST00000151187.8	known	0.00	0	11.0	0	10;12	n	0.00	0	9.5	0	12;7	n	0.00	0	12.5	0	14;11	n	0.00	0	16.0	0	17;15	n	0.00	0	21.0	0	26;16	n	0.00	0	3.0	0	2;4	n	0.00	0	14.5	0	15;14	n	0.00	0	13.5	0	14;13	n	0.00	0	11.5	0	9;14	n	0.00	0	12.0	0	9;15	n	0.00	0	10.0	0	14;6	n	0.10	2	17.5	2	19;16	y	ENSMUSG00000029782.21	Tmem209	chr6	protein_coding	transmembrane protein 209
known_NIR_15659	chr6	30508511	30509684	-	30508511;30508801	30508665;30509684	ES	ENSMUST00000064330.13	known	0.00	0	4.0	0	6;2	n	0.00	0	5.5	0	9;2	n	0.00	0	7.0	0	9;5	n	0.00	0	14.5	0	17;12	n	0.36	2	3.5	2	4;3	n	0.00	0	4.0	0	4;4	n	0.00	0	7.5	0	10;5	n	0.00	0	9.0	0	15;3	n	0.00	0	6.0	0	6;6	n	0.20	2	8.0	2	12;4	y	0.36	2	3.5	2	2;5	n	0.00	0	8.0	0	13;3	n	ENSMUSG00000029782.21	Tmem209	chr6	protein_coding	transmembrane protein 209
known_NIR_15660	chr6	30679443	30680130	-	30671369	30680130	A3SS	ENSMUST00000031810.15	known	0.00	0	2	0	2	n	0.50	2	2	2	2	n	0.40	2	3	2	3	n	0.12	1	7	1	7	n	0.22	2	7	2	7	n	0.00	0	4	0	4	n	0.31	4	9	4	9	y	0.20	1	4	1	4	n	0.00	0	5	0	5	n	0.67	2	1	2	1	n	0.43	3	4	3	4	n	0.33	2	4	2	4	n	ENSMUSG00000029790.17	Cep41	chr6	protein_coding	centrosomal protein 41
known_NIR_15661	chr6	30749500	30749760	-	30749503	30749760	A3SS	ENSMUST00000048774.13	known	0.04	4	96	4	96	y	0.02	2	84	2	84	y	0.04	3	65	3	65	y	0.05	5	95	5	95	y	0.00	0	89	0	89	n	0.00	0	52	0	52	n	0.05	6	115	6	115	y	0.06	3	46	3	46	y	0.00	0	54	0	54	n	0.04	4	99	4	99	y	0.05	5	104	5	104	y	0.04	4	91	4	91	y	ENSMUSG00000025607.16	Copg2	chr6	protein_coding	coatomer protein complex, subunit gamma 2
known_NIR_15662	chr6	30801193	30801303	-	30793773	30801303	A3SS	ENSMUST00000048774.13	known	0.00	0	17	0	17	n	0.00	0	24	0	24	n	0.00	0	38	0	38	n	0.00	0	33	0	33	n	0.00	0	52	0	52	n	0.00	0	15	0	15	n	0.05	2	35	2	35	y	0.00	0	17	0	17	n	0.00	0	25	0	25	n	0.00	0	33	0	33	n	0.00	0	25	0	25	n	0.00	0	30	0	30	n	ENSMUSG00000025607.16	Copg2	chr6	protein_coding	coatomer protein complex, subunit gamma 2
known_NIR_15663	chr6	30803206	30835673	-	30835552	30835673	3pMXE	ENSMUST00000131256.8	known	0.82	18	4	18	4	y	1.00	15	0	15	0	n	1.00	33	0	33	0	n	1.00	43	0	43	0	n	0.92	45	4	45	4	y	1.00	23	0	23	0	n	0.96	25	1	25	1	n	1.00	22	0	22	0	n	0.96	24	1	24	1	n	0.87	13	2	13	2	y	0.89	16	2	16	2	y	0.97	34	1	34	1	n	ENSMUSG00000025607.16	Copg2	chr6	protein_coding	coatomer protein complex, subunit gamma 2
known_NIR_15664	chr6	30872529	30873302	-	30872529	30873596	A5SS	ENSMUST00000048774.13	known	0.00	0	21	0	21	n	0.00	0	9	0	9	n	0.00	0	38	0	38	n	0.00	0	25	0	25	n	0.10	4	38	4	38	y	0.00	0	20	0	20	n	0.00	0	34	0	34	n	0.00	0	25	0	25	n	0.00	0	22	0	22	n	0.00	0	27	0	27	n	0.00	0	20	0	20	n	0.00	0	32	0	32	n	ENSMUSG00000025607.16	Copg2	chr6	protein_coding	coatomer protein complex, subunit gamma 2
known_NIR_15665	chr6	31197454	31261938	+	31197454;31254890	31254783;31261938	ES	ENSMUST00000123149.8	known	0.00	0	39.0	0	37;41	n	0.11	6	49.5	6	39;60	y	0.08	3	33.5	3	24;43	y	0.03	1	36.0	1	36;36	n	0.03	2	67.0	2	67;67	y	0.16	7	35.5	7	30;41	y	0.05	4	77.5	4	72;83	y	0.04	1	24.0	1	25;23	n	0.07	3	39.5	3	37;42	y	0.05	3	56.0	3	39;73	y	0.07	4	53.5	4	41;66	y	0.04	3	67.5	3	51;84	y	ENSMUSG00000087380.8	2210408F21Rik	chr6	lncRNA	RIKEN cDNA 2210408F21 gene
known_NIR_15666	chr6	31197454	31261938	+	31254890	31261938	5pMXE	ENSMUST00000133510.2	known	0.00	0	41	0	41	n	0.09	6	60	6	60	y	0.07	3	43	3	43	y	0.03	1	36	1	36	n	0.03	2	67	2	67	y	0.15	7	41	7	41	y	0.05	4	83	4	83	y	0.04	1	23	1	23	n	0.07	3	42	3	42	y	0.04	3	73	3	73	y	0.06	4	66	4	66	y	0.03	3	84	3	84	y	ENSMUSG00000087380.8	2210408F21Rik	chr6	lncRNA	RIKEN cDNA 2210408F21 gene
known_NIR_15667	chr6	31197454;31221293	31221040;31254783	+	31197454	31254783	cassetteExon	ENSMUST00000144612.8	known	0.12	5.0	37	7;3	37	y	0.13	6.0	39	1;11	39	n	0.08	2.0	24	0;4	24	n	0.13	5.5	36	7;4	36	y	0.09	6.5	67	5;8	67	y	0.03	1.0	30	1;1	30	n	0.16	14.0	72	18;10	72	y	0.07	2.0	25	1;3	25	n	0.17	7.5	37	6;9	37	y	0.26	14.0	39	14;14	39	y	0.14	6.5	41	8;5	41	y	0.13	7.5	51	9;6	51	y	ENSMUSG00000087380.8	2210408F21Rik	chr6	lncRNA	RIKEN cDNA 2210408F21 gene
known_NIR_15668	chr6	31197454;31221293	31221040;31261938	+	31197454	31261938	cassetteExon	ENSMUST00000139444.8	known	1.00	3.5	0	7;0	0	n	0.14	1.0	6	1;1	6	n	0.00	0.0	3	0;0	3	n	0.80	4.0	1	7;1	1	n	0.56	2.5	2	5;0	2	n	0.07	0.5	7	1;0	7	n	0.71	10.0	4	18;2	4	y	0.33	0.5	1	1;0	1	n	0.50	3.0	3	6;0	3	n	0.73	8.0	3	14;2	3	y	0.50	4.0	4	8;0	4	n	0.62	5.0	3	9;1	3	n	ENSMUSG00000087380.8	2210408F21Rik	chr6	lncRNA	RIKEN cDNA 2210408F21 gene
known_NIR_15669	chr6	31197454;31221293	31221040;31261938	+	31197454;31254890	31254783;31261938	MXE	ENSMUST00000123149.8	known	0.08	3.5	39.0	7;0	37;41	n	0.02	1.0	49.5	1;1	39;60	n	0.00	0.0	33.5	0;0	24;43	n	0.10	4.0	36.0	7;1	36;36	n	0.04	2.5	67.0	5;0	67;67	n	0.01	0.5	35.5	1;0	30;41	n	0.11	10.0	77.5	18;2	72;83	y	0.02	0.5	24.0	1;0	25;23	n	0.07	3.0	39.5	6;0	37;42	n	0.12	8.0	56.0	14;2	39;73	y	0.07	4.0	53.5	8;0	41;66	n	0.07	5.0	67.5	9;1	51;84	n	ENSMUSG00000087380.8	2210408F21Rik	chr6	lncRNA	RIKEN cDNA 2210408F21 gene
known_NIR_15670	chr6	31197454;31254890	31254783;31312926	+	31197454;31262055	31261938;31312926	MXE	ENSMUST00000139444.8	known	0.84	21.0	4.0	37;5	0;8	n	0.73	20.5	7.5	39;2	6;9	y	0.47	14.0	15.5	24;4	3;28	y	0.85	20.0	3.5	36;4	1;6	n	0.79	38.5	10.5	67;10	2;19	y	0.59	17.0	12.0	30;4	7;17	y	0.77	38.5	11.5	72;5	4;19	y	0.72	14.0	5.5	25;3	1;10	n	0.71	20.5	8.5	37;4	3;14	y	0.65	21.0	11.5	39;3	3;20	y	0.66	23.0	12.0	41;5	4;20	y	0.73	27.0	10.0	51;3	3;17	y	ENSMUSG00000087380.8	2210408F21Rik	chr6	lncRNA	RIKEN cDNA 2210408F21 gene
known_NIR_15671	chr6	31197454;31254890	31254783;31312926	+	31197454;31305295	31261938;31312926	MXE	ENSMUST00000151076.8	known	0.58	21.0	15.0	37;5	0;30	n	0.44	20.5	26.5	39;2	6;47	y	0.57	14.0	10.5	24;4	3;18	y	0.59	20.0	14.0	36;4	1;27	n	0.65	38.5	20.5	67;10	2;39	y	0.54	17.0	14.5	30;4	7;22	y	0.66	38.5	19.5	72;5	4;35	y	0.54	14.0	12.0	25;3	1;23	n	0.71	20.5	8.5	37;4	3;14	y	0.49	21.0	21.5	39;3	3;40	y	0.49	23.0	24.0	41;5	4;44	y	0.52	27.0	24.5	51;3	3;46	y	ENSMUSG00000087380.8	2210408F21Rik	chr6	lncRNA	RIKEN cDNA 2210408F21 gene
known_NIR_15672	chr6	31197454;31262055	31261938;31312926	+	31197454;31305295	31254783;31312926	MXE	ENSMUST00000144612.8	known	0.11	4.0	33.5	0;8	37;30	n	0.15	7.5	43.0	6;9	39;47	y	0.42	15.5	21.0	3;28	24;18	y	0.10	3.5	31.5	1;6	36;27	n	0.17	10.5	53.0	2;19	67;39	y	0.32	12.0	26.0	7;17	30;22	y	0.18	11.5	53.5	4;19	72;35	y	0.19	5.5	24.0	1;10	25;23	n	0.25	8.5	25.5	3;14	37;14	y	0.23	11.5	39.5	3;20	39;40	y	0.22	12.0	42.5	4;20	41;44	y	0.17	10.0	48.5	3;17	51;46	y	ENSMUSG00000087380.8	2210408F21Rik	chr6	lncRNA	RIKEN cDNA 2210408F21 gene
known_NIR_15673	chr6	31221293	31261938	+	31221293;31254890	31254783;31261938	ES	ENSMUST00000155345.8	known	0.00	0	22.0	0	3;41	n	0.03	1	35.5	1	11;60	n	0.00	0	23.5	0	4;43	n	0.05	1	20.0	1	4;36	n	0.00	0	37.5	0	8;67	n	0.00	0	21.0	0	1;41	n	0.04	2	46.5	2	10;83	y	0.00	0	13.0	0	3;23	n	0.00	0	25.5	0	9;42	n	0.04	2	43.5	2	14;73	y	0.00	0	35.5	0	5;66	n	0.02	1	45.0	1	6;84	n	ENSMUSG00000087380.8	2210408F21Rik	chr6	lncRNA	RIKEN cDNA 2210408F21 gene
known_NIR_15674	chr6	31221293	31261938	+	31254890	31261938	5pMXE	ENSMUST00000133510.2	known	0.00	0	41	0	41	n	0.02	1	60	1	60	n	0.00	0	43	0	43	n	0.03	1	36	1	36	n	0.00	0	67	0	67	n	0.00	0	41	0	41	n	0.02	2	83	2	83	y	0.00	0	23	0	23	n	0.00	0	42	0	42	n	0.03	2	73	2	73	y	0.00	0	66	0	66	n	0.01	1	84	1	84	n	ENSMUSG00000087380.8	2210408F21Rik	chr6	lncRNA	RIKEN cDNA 2210408F21 gene
known_NIR_15675	chr6	31254890	31312926	+	31262055	31312926	5pMXE	ENSMUST00000138653.8	known	0.38	5	8	5	8	y	0.18	2	9	2	9	y	0.12	4	28	4	28	y	0.40	4	6	4	6	y	0.34	10	19	10	19	y	0.19	4	17	4	17	y	0.21	5	19	5	19	y	0.23	3	10	3	10	y	0.22	4	14	4	14	y	0.13	3	20	3	20	y	0.20	5	20	5	20	y	0.15	3	17	3	17	y	ENSMUSG00000087380.8	2210408F21Rik	chr6	lncRNA	RIKEN cDNA 2210408F21 gene
known_NIR_15676	chr6	31254890;31262055	31261938;31312926	+	31254890	31312926	cassetteExon	ENSMUST00000136571.8	known	0.83	24.5	5	41;8	5	y	0.95	34.5	2	60;9	2	y	0.90	35.5	4	43;28	4	y	0.84	21.0	4	36;6	4	y	0.81	43.0	10	67;19	10	y	0.88	29.0	4	41;17	4	y	0.91	51.0	5	83;19	5	y	0.85	16.5	3	23;10	3	y	0.88	28.0	4	42;14	4	y	0.94	46.5	3	73;20	3	y	0.90	43.0	5	66;20	5	y	0.94	50.5	3	84;17	3	y	ENSMUSG00000087380.8	2210408F21Rik	chr6	lncRNA	RIKEN cDNA 2210408F21 gene
known_NIR_15677	chr6	31262055	31269953	+	31262055	31305224	A3SS	ENSMUST00000123149.8	known	0.00	0	48	0	48	n	0.00	0	79	0	79	n	0.07	3	38	3	38	y	0.00	0	53	0	53	n	0.00	0	90	0	90	n	0.00	0	49	0	49	n	0.01	1	102	1	102	n	0.00	0	30	0	30	n	0.02	1	47	1	47	n	0.00	0	94	0	94	n	0.00	0	89	0	89	n	0.00	0	67	0	67	n	ENSMUSG00000087380.8	2210408F21Rik	chr6	lncRNA	RIKEN cDNA 2210408F21 gene
known_NIR_15678	chr6	31262055	31269953	+	31262055	31312926	A3SS	ENSMUST00000139444.8	known	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.10	3	28	3	28	y	0.00	0	6	0	6	n	0.00	0	19	0	19	n	0.00	0	17	0	17	n	0.05	1	19	1	19	n	0.00	0	10	0	10	n	0.07	1	14	1	14	n	0.00	0	20	0	20	n	0.00	0	20	0	20	n	0.00	0	17	0	17	n	ENSMUSG00000087380.8	2210408F21Rik	chr6	lncRNA	RIKEN cDNA 2210408F21 gene
known_NIR_15679	chr6	31262055	31312926	+	31262055	31305224	3pMXE	ENSMUST00000138606.8	known	0.14	8	48	8	48	y	0.10	9	79	9	79	y	0.42	28	38	28	38	y	0.10	6	53	6	53	y	0.17	19	90	19	90	y	0.26	17	49	17	49	y	0.16	19	102	19	102	y	0.25	10	30	10	30	y	0.23	14	47	14	47	y	0.18	20	94	20	94	y	0.18	20	89	20	89	y	0.20	17	67	17	67	y	ENSMUSG00000087380.8	2210408F21Rik	chr6	lncRNA	RIKEN cDNA 2210408F21 gene
known_NIR_15680	chr6	31262055	31312926	+	31262055;31305295	31305224;31312926	ES	ENSMUST00000155345.8	known	0.17	8	39.0	8	48;30	y	0.12	9	63.0	9	79;47	y	0.50	28	28.0	28	38;18	y	0.13	6	40.0	6	53;27	y	0.23	19	64.5	19	90;39	y	0.32	17	35.5	17	49;22	y	0.22	19	68.5	19	102;35	y	0.27	10	26.5	10	30;23	y	0.31	14	30.5	14	47;14	y	0.23	20	67.0	20	94;40	y	0.23	20	66.5	20	89;44	y	0.23	17	56.5	17	67;46	y	ENSMUSG00000087380.8	2210408F21Rik	chr6	lncRNA	RIKEN cDNA 2210408F21 gene
known_NIR_15681	chr6	31262055	31312926	+	31262055;31305324	31305224;31312926	ES	ENSMUST00000123149.8	known	0.18	8	36.5	8	48;25	y	0.15	9	51.5	9	79;24	y	0.49	28	29.0	28	38;20	y	0.12	6	45.5	6	53;38	y	0.22	19	65.5	19	90;41	y	0.35	17	31.0	17	49;13	y	0.23	19	62.5	19	102;23	y	0.33	10	20.5	10	30;11	y	0.30	14	33.0	14	47;19	y	0.24	20	63.5	20	94;33	y	0.25	20	58.5	20	89;28	y	0.28	17	44.5	17	67;22	y	ENSMUSG00000087380.8	2210408F21Rik	chr6	lncRNA	RIKEN cDNA 2210408F21 gene
known_NIR_15682	chr6	31305324	31312926	+	31305295	31312926	A5SS	ENSMUST00000144612.8	known	0.45	25	30	25	30	y	0.34	24	47	24	47	y	0.53	20	18	20	18	y	0.58	38	27	38	27	y	0.51	41	39	41	39	y	0.37	13	22	13	22	y	0.40	23	35	23	35	y	0.32	11	23	11	23	y	0.58	19	14	19	14	y	0.45	33	40	33	40	y	0.39	28	44	28	44	y	0.32	22	46	22	46	y	ENSMUSG00000087380.8	2210408F21Rik	chr6	lncRNA	RIKEN cDNA 2210408F21 gene
known_NIR_15683	chr6	31312997	31314165	+	31312997;31313792	31313739;31314165	ES	ENSMUST00000144612.8	known	0.28	24	62.0	24	57;67	y	0.18	14	65.0	14	65;65	y	0.28	22	57.0	22	53;61	y	0.27	18	47.5	18	49;46	y	0.15	15	88.0	15	90;86	y	0.08	4	48.5	4	43;54	y	0.33	32	66.0	32	64;68	y	0.14	6	36.0	6	34;38	y	0.17	14	69.0	14	69;69	y	0.16	19	102.5	19	106;99	y	0.14	14	83.5	14	82;85	y	0.28	26	65.5	26	63;68	y	ENSMUSG00000087380.8	2210408F21Rik	chr6	lncRNA	RIKEN cDNA 2210408F21 gene
known_NIR_15684	chr6	31408184	31409871	+	31408184	31409874	A3SS	ENSMUST00000026699.15	known	0.00	0	55	0	55	n	0.12	5	37	5	37	y	0.05	5	88	5	88	y	0.05	4	72	4	72	y	0.05	4	80	4	80	y	0.00	0	31	0	31	n	0.08	7	86	7	86	y	0.05	3	58	3	58	y	0.03	2	56	2	56	y	0.02	2	93	2	93	y	0.03	2	62	2	62	y	0.03	3	90	3	90	y	ENSMUSG00000025609.16	Mkln1	chr6	protein_coding	muskelin 1, intracellular mediator containing kelch motifs
known_NIR_15685	chr6	31428519	31445066	+	31428519;31436002	31435890;31445066	ES	ENSMUST00000026699.15	known	0.00	0	64.5	0	76;53	n	0.06	4	58.5	4	60;57	y	0.00	0	104.0	0	103;105	n	0.00	0	125.0	0	127;123	n	0.04	5	125.5	5	131;120	y	0.00	0	56.5	0	58;55	n	0.03	3	94.5	3	90;99	y	0.00	0	74.0	0	72;76	n	0.05	4	83.0	4	85;81	y	0.03	3	115.0	3	110;120	y	0.01	1	95.5	1	96;95	n	0.00	0	118.0	0	134;102	n	ENSMUSG00000025609.16	Mkln1	chr6	protein_coding	muskelin 1, intracellular mediator containing kelch motifs
known_NIR_15686	chr6	31473706	31484560	+	31473706;31476876	31476822;31484560	ES	ENSMUST00000026699.15	known	0.03	4	132.5	4	127;138	y	0.08	10	112.0	10	112;112	y	0.10	12	110.0	12	113;107	y	0.04	5	106.5	5	108;105	y	0.04	8	175.0	8	174;176	y	0.07	4	55.5	4	58;53	y	0.03	5	163.0	5	149;177	y	0.05	3	59.5	3	60;59	y	0.02	2	93.5	2	88;99	y	0.05	9	179.0	9	177;181	y	0.04	6	144.5	6	141;148	y	0.04	5	125.0	5	115;135	y	ENSMUSG00000025609.16	Mkln1	chr6	protein_coding	muskelin 1, intracellular mediator containing kelch motifs
known_NIR_15687	chr6	32869310;32870341	32870327;32945136	-	32869310	32945136	cassetteExon	ENSMUST00000066379.11	known	0.00	0.0	230	0;0	230	n	0.00	0.0	235	0;0	235	n	0.00	0.0	224	0;0	224	n	0.01	2.0	281	2;2	281	y	0.00	0.0	313	0;0	313	n	0.00	0.0	172	0;0	172	n	0.00	0.0	374	0;0	374	n	0.00	0.5	137	0;1	137	n	0.00	0.0	238	0;0	238	n	0.00	0.0	377	0;0	377	n	0.00	0.0	318	0;0	318	n	0.00	0.0	345	0;0	345	n	ENSMUSG00000053768.14	Chchd3	chr6	protein_coding	coiled-coil-helix-coiled-coil-helix domain containing 3
known_NIR_15688	chr6	33418974	33452932	+	33418974	33556917	A3SS	ENSMUST00000052266.15	known	0.00	0	15	0	15	n	0.20	1	4	1	4	n	0.21	4	15	4	15	y	0.05	1	18	1	18	n	0.06	1	15	1	15	n	0.08	1	12	1	12	n	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.09	1	10	1	10	n	0.29	2	5	2	5	n	0.22	2	7	2	7	n	ENSMUSG00000029763.18	Exoc4	chr6	protein_coding	exocyst complex component 4
known_NIR_15689	chr6	33792745	33793271	+	33792745	33815910	A3SS	ENSMUST00000052266.15	known	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	19	0	19	n	0.00	0	16	0	16	n	0.08	1	12	1	12	n	0.00	0	20	0	20	n	0.06	2	31	2	31	y	0.08	1	11	1	11	n	0.00	0	6	0	6	n	0.00	0	29	0	29	n	0.05	1	18	1	18	n	0.12	2	14	2	14	y	ENSMUSG00000029763.18	Exoc4	chr6	protein_coding	exocyst complex component 4
known_NIR_15690	chr6	34147509;34149690	34149563;34153713	-	34147509	34153713	cassetteExon	ENSMUST00000019143.9	known	0.25	7.5	23	6;9	23	y	0.38	6.0	10	7;5	10	y	0.34	11.0	21	9;13	21	y	0.27	7.0	19	6;8	19	y	0.20	9.5	37	9;10	37	y	0.23	7.0	24	10;4	24	y	0.17	7.5	36	10;5	36	y	0.17	5.5	26	5;6	26	y	0.26	4.5	13	6;3	13	y	0.36	13.5	24	15;12	24	y	0.11	2.5	20	4;1	20	n	0.40	8.5	13	7;10	13	y	ENSMUSG00000018999.15	Slc35b4	chr6	protein_coding	solute carrier family 35, member B4
known_NIR_15691	chr6	34686632	34718724	+	34663009	34718724	A5SS	ENSMUST00000079391.10	known	0.97	131	4	131	4	y	1.00	91	0	91	0	n	0.98	298	6	298	6	y	0.99	206	3	206	3	y	0.97	277	9	277	9	y	0.98	157	3	157	3	y	0.98	183	3	183	3	y	1.00	184	0	184	0	n	0.99	135	1	135	1	n	1.00	194	0	194	0	n	0.99	117	1	117	1	n	0.99	217	2	217	2	y	ENSMUSG00000029761.17	Cald1	chr6	protein_coding	caldesmon 1
known_NIR_15692	chr6	34722950	34724821	+	34723025	34724821	A5SS	ENSMUST00000123823.8	known	1.00	12	0	12	0	n	1.00	15	0	15	0	n	0.95	40	2	40	2	y	1.00	40	0	40	0	n	1.00	49	0	49	0	n	1.00	12	0	12	0	n	1.00	17	0	17	0	n	1.00	23	0	23	0	n	1.00	22	0	22	0	n	0.91	29	3	29	3	y	0.95	20	1	20	1	n	1.00	34	0	34	0	n	ENSMUSG00000029761.17	Cald1	chr6	protein_coding	caldesmon 1
known_NIR_15693	chr6	34722950	34724821	+	34723574	34724821	A5SS	ENSMUST00000136907.8	known	0.57	12	9	12	9	y	0.75	15	5	15	5	y	0.56	40	31	40	31	y	0.63	40	23	40	23	y	0.61	49	31	49	31	y	0.48	12	13	12	13	y	0.42	17	23	17	23	y	0.56	23	18	23	18	y	0.59	22	15	22	15	y	0.57	29	22	29	22	y	0.67	20	10	20	10	y	0.67	34	17	34	17	y	ENSMUSG00000029761.17	Cald1	chr6	protein_coding	caldesmon 1
known_NIR_15694	chr6	34722950	34730378	+	34724904	34730378	A5SS&ES	ENSMUST00000115027.8	known	0.84	201	37	201	37	y	0.81	101	24	101	24	y	0.86	359	60	359	60	y	0.80	286	72	286	72	y	0.82	351	77	351	77	y	0.87	189	29	189	29	y	0.80	219	55	219	55	y	0.85	189	34	189	34	y	0.89	171	21	171	21	y	0.83	262	54	262	54	y	0.82	126	28	126	28	y	0.85	255	46	255	46	y	ENSMUSG00000029761.17	Cald1	chr6	protein_coding	caldesmon 1
known_NIR_15695	chr6	34722950;34724904	34724821;34730378	+	34722950	34730378	cassetteExon	ENSMUST00000079391.10	known	0.11	24.5	201	12;37	201	y	0.16	19.5	101	15;24	101	y	0.12	50.0	359	40;60	359	y	0.16	56.0	286	40;72	286	y	0.15	63.0	351	49;77	351	y	0.10	20.5	189	12;29	189	y	0.14	36.0	219	17;55	219	y	0.13	28.5	189	23;34	189	y	0.11	21.5	171	22;21	171	y	0.14	41.5	262	29;54	262	y	0.16	24.0	126	20;28	126	y	0.14	40.0	255	34;46	255	y	ENSMUSG00000029761.17	Cald1	chr6	protein_coding	caldesmon 1
known_NIR_15696	chr6	34723574	34724821	+	34723025	34724821	A5SS	ENSMUST00000123823.8	known	1.00	9	0	9	0	n	1.00	5	0	5	0	n	0.94	31	2	31	2	y	1.00	23	0	23	0	n	1.00	31	0	31	0	n	1.00	13	0	13	0	n	1.00	23	0	23	0	n	1.00	18	0	18	0	n	1.00	15	0	15	0	n	0.88	22	3	22	3	y	0.91	10	1	10	1	n	1.00	17	0	17	0	n	ENSMUSG00000029761.17	Cald1	chr6	protein_coding	caldesmon 1
known_NIR_15697	chr6	34723574	34730378	+	34722950	34730378	A5SS	ENSMUST00000079391.10	known	0.15	35	201	35	201	y	0.15	18	101	18	101	y	0.23	109	359	109	359	y	0.11	35	286	35	286	y	0.21	91	351	91	351	y	0.10	22	189	22	189	y	0.16	41	219	41	219	y	0.17	38	189	38	189	y	0.11	22	171	22	171	y	0.14	41	262	41	262	y	0.12	18	126	18	126	y	0.15	46	255	46	255	y	ENSMUSG00000029761.17	Cald1	chr6	protein_coding	caldesmon 1
known_NIR_15698	chr6	34723574	34730378	+	34723574;34724904	34724821;34730378	ES	ENSMUST00000136907.8	known	0.60	35	23.0	35	9;37	y	0.55	18	14.5	18	5;24	y	0.71	109	45.5	109	31;60	y	0.42	35	47.5	35	23;72	y	0.63	91	54.0	91	31;77	y	0.51	22	21.0	22	13;29	y	0.51	41	39.0	41	23;55	y	0.59	38	26.0	38	18;34	y	0.55	22	18.0	22	15;21	y	0.52	41	38.0	41	22;54	y	0.49	18	19.0	18	10;28	y	0.59	46	31.5	46	17;46	y	ENSMUSG00000029761.17	Cald1	chr6	protein_coding	caldesmon 1
known_NIR_15699	chr6	34723574	34730378	+	34724904	34730378	A5SS&ES	ENSMUST00000031775.13	known	0.49	35	37	35	37	y	0.43	18	24	18	24	y	0.64	109	60	109	60	y	0.33	35	72	35	72	y	0.54	91	77	91	77	y	0.43	22	29	22	29	y	0.43	41	55	41	55	y	0.53	38	34	38	34	y	0.51	22	21	22	21	y	0.43	41	54	41	54	y	0.39	18	28	18	28	y	0.50	46	46	46	46	y	ENSMUSG00000029761.17	Cald1	chr6	protein_coding	caldesmon 1
known_NIR_15700	chr6	34730523	34732569	+	34730523	34732575	A3SS	ENSMUST00000079391.10	known	1.00	198	0	198	0	n	1.00	151	0	151	0	n	0.97	474	17	474	17	y	1.00	304	0	304	0	n	1.00	410	0	410	0	n	1.00	226	0	226	0	n	1.00	262	0	262	0	n	1.00	241	0	241	0	n	1.00	192	0	192	0	n	1.00	336	0	336	0	n	0.96	155	7	155	7	y	0.96	319	14	319	14	y	ENSMUSG00000029761.17	Cald1	chr6	protein_coding	caldesmon 1
known_NIR_15701	chr6	34760528	34762126	+	34760565	34762126	A5SS	ENSMUST00000202017.4	known	0.14	2	12	2	12	y	0.24	4	13	4	13	y	0.22	2	7	2	7	n	0.05	1	18	1	18	n	0.00	0	12	0	12	n	0.08	1	12	1	12	n	0.31	9	20	9	20	y	0.00	0	12	0	12	n	0.09	2	21	2	21	y	0.21	8	30	8	30	y	0.12	2	14	2	14	y	0.06	2	30	2	30	y	ENSMUSG00000038836.16	Agbl3	chr6	protein_coding	ATP/GTP binding protein-like 3
known_NIR_15702	chr6	34840275	34849463	+	34840275	34845450	3pMXE	ENSMUST00000123019.8	known	0.95	55	3	55	3	y	0.98	41	1	41	1	n	0.83	57	12	57	12	y	0.90	89	10	89	10	y	0.84	57	11	57	11	y	1.00	17	0	17	0	n	0.91	94	9	94	9	y	0.91	31	3	31	3	y	0.88	59	8	59	8	y	0.88	96	13	96	13	y	0.86	63	10	63	10	y	0.90	84	9	84	9	y	ENSMUSG00000057137.10	Tmem140	chr6	protein_coding	transmembrane protein 140
known_NIR_15703	chr6	34840275;34845757	34845450;34849463	+	34840275	34849463	cassetteExon	ENSMUST00000074949.4	known	0.04	2.0	55	3;1	55	n	0.02	1.0	41	1;1	41	n	0.14	9.5	57	12;7	57	y	0.06	6.0	89	10;2	89	y	0.10	6.0	57	11;1	57	n	0.03	0.5	17	0;1	17	n	0.06	5.5	94	9;2	94	y	0.05	1.5	31	3;0	31	n	0.06	4.0	59	8;0	59	n	0.07	7.5	96	13;2	96	y	0.10	7.0	63	10;4	63	y	0.08	7.0	84	9;5	84	y	ENSMUSG00000057137.10	Tmem140	chr6	protein_coding	transmembrane protein 140
known_NIR_15704	chr6	34851630	34852391	-	34851630	34852472	A5SS	ENSMUST00000055097.11	known	0.20	2	8	2	8	y	0.13	2	13	2	13	y	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.10	1	9	1	9	n	0.20	1	4	1	4	n	0.10	1	9	1	9	n	0.00	0	4	0	4	n	0.20	2	8	2	8	y	0.00	0	2	0	2	n	ENSMUSG00000046806.14	Cyren	chr6	protein_coding	cell cycle regulator of NHEJ
known_NIR_15705	chr6	34853706	34854835	-	34853706	34854510	A5SS	ENSMUST00000055097.11	known	0.90	9	1	9	1	n	0.87	13	2	13	2	y	1.00	8	0	8	0	n	0.73	8	3	8	3	y	0.83	5	1	5	1	n	1.00	4	0	4	0	n	1.00	6	0	6	0	n	1.00	9	0	9	0	n	1.00	4	0	4	0	n	1.00	8	0	8	0	n	0.88	7	1	7	1	n	1.00	7	0	7	0	n	ENSMUSG00000046806.14	Cyren	chr6	protein_coding	cell cycle regulator of NHEJ
known_NIR_15706	chr6	34886475	34886649	-	34886475	34886612	A5SS	ENSMUST00000152488.8	known	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.50	8	8	8	8	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000058486.12	Wdr91	chr6	protein_coding	WD repeat domain 91
known_NIR_15707	chr6	34886475	34887441	-	34886475	34887632	A5SS	ENSMUST00000081214.12	known	0.00	0	9	0	9	n	0.09	1	10	1	10	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.08	1	12	1	12	n	0.00	0	2	0	2	n	0.11	2	17	2	17	y	0.00	0	7	0	7	n	0.00	0	29	0	29	n	0.00	0	18	0	18	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	ENSMUSG00000058486.12	Wdr91	chr6	protein_coding	WD repeat domain 91
known_NIR_15708	chr6	34886475	34887445	-	34886475	34887632	A5SS	ENSMUST00000081214.12	known	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.12	2	15	2	15	y	0.00	0	12	0	12	n	0.33	1	2	1	2	n	0.00	0	17	0	17	n	0.00	0	7	0	7	n	0.00	0	29	0	29	n	0.05	1	18	1	18	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	ENSMUSG00000058486.12	Wdr91	chr6	protein_coding	WD repeat domain 91
known_NIR_15709	chr6	34886475;34886762	34886612;34887632	-	34886475	34887632	cassetteExon	ENSMUST00000081214.12	known	0.28	3.5	9	2;5	9	y	0.20	2.5	10	1;4	10	n	0.27	4.0	11	0;8	11	n	0.30	6.5	15	4;9	15	y	0.35	6.5	12	9;4	12	y	0.50	2.0	2	3;1	2	n	0.24	5.5	17	3;8	17	y	0.26	2.5	7	1;4	7	n	0.11	3.5	29	2;5	29	y	0.29	7.5	18	8;7	18	y	0.21	3.0	11	2;4	11	y	0.28	5.5	14	3;8	14	y	ENSMUSG00000058486.12	Wdr91	chr6	protein_coding	WD repeat domain 91
known_NIR_15710	chr6	34886475;34886762	34886649;34887632	-	34886475	34887632	cassetteExon	ENSMUST00000081214.12	known	0.22	2.5	9	0;5	9	n	0.17	2.0	10	0;4	10	n	0.27	4.0	11	0;8	11	n	0.23	4.5	15	0;9	15	n	0.14	2.0	12	0;4	12	n	0.20	0.5	2	0;1	2	n	0.19	4.0	17	0;8	17	n	0.22	2.0	7	0;4	7	n	0.08	2.5	29	0;5	29	n	0.29	7.5	18	8;7	18	y	0.15	2.0	11	0;4	11	n	0.22	4.0	14	0;8	14	n	ENSMUSG00000058486.12	Wdr91	chr6	protein_coding	WD repeat domain 91
known_NIR_15711	chr6	34886762	34887632	-	34886762	34887445	5pMXE	ENSMUST00000152488.8	known	0.71	5	2	5	2	n	1.00	4	0	4	0	n	1.00	8	0	8	0	n	0.90	9	1	9	1	n	0.67	4	2	4	2	n	1.00	1	0	1	0	n	1.00	8	0	8	0	n	1.00	4	0	4	0	n	1.00	5	0	5	0	n	1.00	7	0	7	0	n	1.00	4	0	4	0	n	0.80	8	2	8	2	y	ENSMUSG00000058486.12	Wdr91	chr6	protein_coding	WD repeat domain 91
known_NIR_15712	chr6	35000367;35001275	35001063;35027997	-	35000367	35027997	cassetteExon	ENSMUST00000202143.4	known	0.66	13.5	7	13;14	7	y	0.87	13.0	2	16;10	2	y	0.60	15.0	10	23;7	10	y	0.74	11.5	4	14;9	4	y	0.70	14.0	6	16;12	6	y	0.83	10.0	2	14;6	2	y	0.68	17.0	8	25;9	8	y	0.89	8.5	1	9;8	1	n	0.84	10.5	2	10;11	2	y	0.76	13.0	4	21;5	4	y	1.00	6.0	0	9;3	0	n	0.68	15.0	7	19;11	7	y	ENSMUSG00000038784.14	Cnot4	chr6	protein_coding	CCR4-NOT transcription complex, subunit 4
known_NIR_15713	chr6	35023293	35027997	-	35000367	35027997	A3SS	ENSMUST00000202143.4	known	0.46	6	7	6	7	y	0.71	5	2	5	2	n	0.17	2	10	2	10	y	0.50	4	4	4	4	n	0.45	5	6	5	6	y	0.00	0	2	0	2	n	0.60	12	8	12	8	y	0.67	2	1	2	1	n	0.75	6	2	6	2	n	0.56	5	4	5	4	n	1.00	2	0	2	0	n	0.22	2	7	2	7	n	ENSMUSG00000038784.14	Cnot4	chr6	protein_coding	CCR4-NOT transcription complex, subunit 4
known_NIR_15714	chr6	35023293	35027997	-	35001275	35027997	A3SS	ENSMUST00000114993.9	known	0.30	6	14	6	14	y	0.33	5	10	5	10	y	0.22	2	7	2	7	n	0.31	4	9	4	9	y	0.29	5	12	5	12	y	0.00	0	6	0	6	n	0.57	12	9	12	9	y	0.20	2	8	2	8	y	0.35	6	11	6	11	y	0.50	5	5	5	5	y	0.40	2	3	2	3	n	0.15	2	11	2	11	y	ENSMUSG00000038784.14	Cnot4	chr6	protein_coding	CCR4-NOT transcription complex, subunit 4
known_NIR_15715	chr6	35033203	35041824	-	35033203	35041833	A5SS	ENSMUST00000202143.4	known	0.20	2	8	2	8	y	0.00	0	15	0	15	n	0.25	3	9	3	9	y	0.06	1	15	1	15	n	0.17	4	19	4	19	y	0.29	2	5	2	5	n	0.40	8	12	8	12	y	0.06	1	17	1	17	n	0.06	1	16	1	16	n	0.11	2	17	2	17	y	0.00	0	11	0	11	n	0.29	4	10	4	10	y	ENSMUSG00000038784.14	Cnot4	chr6	protein_coding	CCR4-NOT transcription complex, subunit 4
known_NIR_15716	chr6	35229717	35237345	+	35229980	35237345	A5SS	ENSMUST00000136110.2	known	0.68	366	171	366	171	y	0.72	485	188	485	188	y	0.71	473	189	473	189	y	0.69	396	174	396	174	y	0.67	533	266	533	266	y	0.77	256	76	256	76	y	0.66	513	260	513	260	y	0.74	293	103	293	103	y	0.68	334	155	334	155	y	0.64	618	341	618	341	y	0.67	386	190	386	190	y	0.68	371	171	371	171	y	ENSMUSG00000073155.13	1810058I24Rik	chr6	protein_coding	RIKEN cDNA 1810058I24 gene
known_NIR_15717	chr6	35229717;35229980	35229891;35237345	+	35229717	35237345	cassetteExon	ENSMUST00000152147.8	known	0.19	87.5	366	4;171	366	y	0.17	96.5	485	5;188	485	y	0.18	100.5	473	12;189	473	y	0.19	90.0	396	6;174	396	y	0.20	137.0	533	8;266	533	y	0.14	42.5	256	9;76	256	y	0.21	134.5	513	9;260	513	y	0.16	56.0	293	9;103	293	y	0.19	79.0	334	3;155	334	y	0.22	176.0	618	11;341	618	y	0.20	98.5	386	7;190	386	y	0.19	87.0	371	3;171	371	y	ENSMUSG00000073155.13	1810058I24Rik	chr6	protein_coding	RIKEN cDNA 1810058I24 gene
known_NIR_15718	chr6	35499730	35516495	-	35499730	35516474	A5SS	ENSMUST00000031866.9	known	0.00	0	113	0	113	n	0.00	0	100	0	100	n	0.02	4	168	4	168	y	0.00	0	217	0	217	n	0.00	0	200	0	200	n	0.00	0	78	0	78	n	0.04	8	192	8	192	y	0.00	0	102	0	102	n	0.02	3	126	3	126	y	0.00	0	218	0	218	n	0.00	0	158	0	158	n	0.00	0	217	0	217	n	ENSMUSG00000029840.9	Mtpn	chr6	protein_coding	myotrophin
known_NIR_15719	chr6	3600317	3601368	+	3600317	3602660	A3SS	ENSMUST00000001412.17	known	0.00	0	35	0	35	n	0.00	0	34	0	34	n	0.00	0	48	0	48	n	0.00	0	25	0	25	n	0.00	0	34	0	34	n	0.00	0	16	0	16	n	0.00	0	38	0	38	n	0.00	0	23	0	23	n	0.04	1	22	1	22	n	0.00	0	38	0	38	n	0.07	2	26	2	26	y	0.00	0	34	0	34	n	ENSMUSG00000001376.18	Vps50	chr6	protein_coding	VPS50 EARP/GARPII complex subunit
known_NIR_15720	chr6	37516809	37527141	+	37513080	37527141	A5SS	ENSMUST00000040987.11	known	0.01	3	215	3	215	y	0.06	7	114	7	114	y	0.43	3	4	3	4	n	0.01	3	250	3	250	y	0.02	5	289	5	289	y	0.25	2	6	2	6	n	0.04	8	180	8	180	y	0.06	3	49	3	49	y	0.01	3	230	3	230	y	0.01	3	307	3	307	y	0.03	8	240	8	240	y	0.01	4	301	4	301	y	ENSMUSG00000038641.13	Akr1d1	chr6	protein_coding	aldo-keto reductase family 1, member D1
known_NIR_15721	chr6	37880586;37885299	37885152;37892100	+	37880586	37892100	cassetteExon	ENSMUST00000153004.8	known	1.00	25.0	0	25;25	0	n	1.00	28.5	0	30;27	0	n	0.96	23.5	1	22;25	1	n	0.91	31.5	3	28;35	3	y	0.91	31.0	3	27;35	3	y	1.00	16.0	0	20;12	0	n	1.00	35.0	0	36;34	0	n	0.89	24.5	3	24;25	3	y	0.95	18.5	1	17;20	1	n	0.94	17.0	1	11;23	1	n	0.84	16.0	3	12;20	3	y	0.87	13.5	2	17;10	2	y	ENSMUSG00000029833.18	Trim24	chr6	protein_coding	tripartite motif-containing 24
known_NIR_15722	chr6	37922622	37926157	+	37922724	37926157	A5SS	ENSMUST00000031859.14	known	0.74	26	9	26	9	y	0.66	21	11	21	11	y	0.75	21	7	21	7	y	0.82	27	6	27	6	y	0.67	37	18	37	18	y	1.00	13	0	13	0	n	0.68	30	14	30	14	y	0.65	17	9	17	9	y	0.76	16	5	16	5	y	0.81	21	5	21	5	y	0.70	7	3	7	3	y	0.77	17	5	17	5	y	ENSMUSG00000029833.18	Trim24	chr6	protein_coding	tripartite motif-containing 24
known_NIR_15723	chr6	38308796	38309425	-	38308796	38309077	A5SS	ENSMUST00000114900.8	known	0.07	2	25	2	25	y	0.24	5	16	5	16	y	0.03	2	72	2	72	y	0.05	2	37	2	37	y	0.04	2	55	2	55	y	0.00	0	25	0	25	n	0.00	0	49	0	49	n	0.06	2	31	2	31	y	0.04	1	25	1	25	n	0.07	4	54	4	54	y	0.04	2	45	2	45	y	0.04	2	51	2	51	y	ENSMUSG00000029826.15	Zc3hav1	chr6	protein_coding	zinc finger CCCH type, antiviral 1
known_NIR_15724	chr6	38440984	38447087	+	38440978	38447087	A5SS	ENSMUST00000160583.8	known	0.00	0	2	0	2	n	-	-	-	-	-	-	0.29	2	5	2	5	n	0.40	4	6	4	6	y	0.54	7	6	7	6	y	0.40	4	6	4	6	y	0.00	0	5	0	5	n	0.00	0	16	0	16	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.33	1	2	1	2	n	ENSMUSG00000038538.18	Ubn2	chr6	protein_coding	ubinuclein 2
known_NIR_15725	chr6	38464085;38466239	38466189;38467319	+	38464085	38467319	cassetteExon	ENSMUST00000160583.8	known	0.40	2.0	3	1;3	3	n	0.50	1.0	1	1;1	1	n	0.27	1.5	4	2;1	4	n	0.44	4.0	5	6;2	5	y	0.75	3.0	1	3;3	1	n	1.00	2.5	0	1;4	0	n	0.67	4.0	2	5;3	2	y	0.71	5.0	2	7;3	2	y	1.00	3.0	0	3;3	0	n	0.75	3.0	1	3;3	1	n	0.20	0.5	2	1;0	2	n	0.14	0.5	3	1;0	3	n	ENSMUSG00000038538.18	Ubn2	chr6	protein_coding	ubinuclein 2
known_NIR_15726	chr6	38468866	38475623	+	38468866	38499095	A3SS	ENSMUST00000162593.2	known	0.80	4	1	4	1	n	1.00	2	0	2	0	n	0.90	19	2	19	2	y	1.00	12	0	12	0	n	0.75	6	2	6	2	n	0.60	3	2	3	2	n	1.00	7	0	7	0	n	1.00	4	0	4	0	n	1.00	4	0	4	0	n	1.00	3	0	3	0	n	0.83	5	1	5	1	n	1.00	5	0	5	0	n	ENSMUSG00000038538.18	Ubn2	chr6	protein_coding	ubinuclein 2
known_NIR_15727	chr6	38511945	38516094	+	38510646	38516094	A5SS	ENSMUST00000147651.2	known	0.99	220	2	220	2	y	0.98	227	4	227	4	y	0.99	120	1	120	1	n	1.00	224	0	224	0	n	0.98	227	5	227	5	y	0.96	122	5	122	5	y	0.98	276	5	276	5	y	0.99	134	2	134	2	y	0.99	201	2	201	2	y	1.00	339	1	339	1	n	0.98	321	5	321	5	y	1.00	348	0	348	0	n	ENSMUSG00000019689.5	Fmc1	chr6	protein_coding	formation of mitochondrial complex V assembly factor 1
known_NIR_15728	chr6	38528843	38547445	+	38528843	38531915	3pMXE	ENSMUST00000160922.5	known	0.35	15	28	15	28	y	0.30	9	21	9	21	y	0.77	46	14	46	14	y	0.53	27	24	27	24	y	0.33	22	45	22	45	y	0.70	28	12	28	12	y	0.66	35	18	35	18	y	0.51	24	23	24	23	y	0.33	9	18	9	18	y	0.52	33	31	33	31	y	0.54	13	11	13	11	y	0.57	36	27	36	27	y	ENSMUSG00000029823.17	Luc7l2	chr6	protein_coding	LUC7-like 2 (S. cerevisiae)
known_NIR_15729	chr6	38528843	38547445	+	38528843;38531998	38531915;38547445	ES	ENSMUST00000163047.8	known	0.48	15	16.0	15	28;4	y	0.43	9	12.0	9	21;3	y	0.85	46	8.0	46	14;2	y	0.65	27	14.5	27	24;5	y	0.47	22	25.0	22	45;5	y	0.82	28	6.0	28	12;0	n	0.75	35	11.5	35	18;5	y	0.68	24	11.5	24	23;0	n	0.49	9	9.5	9	18;1	n	0.65	33	17.5	33	31;4	y	0.70	13	5.5	13	11;0	n	0.71	36	15.0	36	27;3	y	ENSMUSG00000029823.17	Luc7l2	chr6	protein_coding	LUC7-like 2 (S. cerevisiae)
known_NIR_15730	chr6	38542657	38545782	+	38531998	38545782	A5SS	ENSMUST00000160582.2	known	1.00	64	0	64	0	n	1.00	41	0	41	0	n	1.00	46	0	46	0	n	1.00	60	0	60	0	n	0.99	89	1	89	1	n	0.96	43	2	43	2	y	1.00	69	0	69	0	n	1.00	50	0	50	0	n	1.00	45	0	45	0	n	1.00	81	0	81	0	n	1.00	60	0	60	0	n	1.00	87	0	87	0	n	ENSMUSG00000029823.17	Luc7l2	chr6	protein_coding	LUC7-like 2 (S. cerevisiae)
known_NIR_15731	chr6	38545852	38547445	+	38528843	38547445	A5SS	ENSMUST00000161538.8	known	0.79	57	15	57	15	y	0.85	51	9	51	9	y	0.39	30	46	30	46	y	0.58	37	27	37	27	y	0.65	41	22	41	22	y	0.40	19	28	19	28	y	0.55	43	35	43	35	y	0.58	33	24	33	24	y	0.83	43	9	43	9	y	0.66	64	33	64	33	y	0.72	33	13	33	13	y	0.68	75	36	75	36	y	ENSMUSG00000029823.17	Luc7l2	chr6	protein_coding	LUC7-like 2 (S. cerevisiae)
known_NIR_15732	chr6	38547539;38548023	38547977;38561976	+	38547539	38561976	cassetteExon	ENSMUST00000163047.8	known	0.07	15.0	194	8;22	194	y	0.05	10.0	191	5;15	191	y	0.03	8.5	257	5;12	257	y	0.05	10.5	209	3;18	209	y	0.06	18.0	283	10;26	283	y	0.05	8.0	152	3;13	152	y	0.07	18.5	239	17;20	239	y	0.04	6.0	156	7;5	156	y	0.04	8.0	196	5;11	196	y	0.07	19.5	274	19;20	274	y	0.09	15.5	165	11;20	165	y	0.07	18.0	254	13;23	254	y	ENSMUSG00000029823.17	Luc7l2	chr6	protein_coding	LUC7-like 2 (S. cerevisiae)
known_NIR_15733	chr6	38570404;38575749	38575720;38580212	+	38570404	38580212	cassetteExon	ENSMUST00000163047.8	known	0.48	131.0	144	119;143	144	y	0.54	132.5	111	128;137	111	y	0.42	157.5	215	143;172	215	y	0.51	134.5	129	130;139	129	y	0.47	184.0	208	185;183	208	y	0.41	97.0	139	97;97	139	y	0.52	185.0	171	174;196	171	y	0.51	108.0	103	102;114	103	y	0.52	156.5	144	144;169	144	y	0.56	223.5	175	209;238	175	y	0.53	161.0	142	149;173	142	y	0.49	164.0	173	160;168	173	y	ENSMUSG00000029823.17	Luc7l2	chr6	protein_coding	LUC7-like 2 (S. cerevisiae)
known_NIR_15734	chr6	38698529	38706856	-	38698532	38706856	A3SS	ENSMUST00000161779.8	known	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.29	2	5	2	5	n	0.15	3	17	3	17	y	0.33	2	4	2	4	n	0.29	4	10	4	10	y	0.14	2	12	2	12	y	0.00	0	8	0	8	n	0.08	1	12	1	12	n	0.10	1	9	1	9	n	0.33	2	4	2	4	n	ENSMUSG00000061436.16	Hipk2	chr6	protein_coding	homeodomain interacting protein kinase 2
known_NIR_15735	chr6	38707930	38714293	-	38708011	38714293	A3SS	ENSMUST00000161779.8	known	0.42	5	7	5	7	y	0.40	2	3	2	3	n	0.32	6	13	6	13	y	0.17	3	15	3	15	y	0.22	6	21	6	21	y	0.38	3	5	3	5	n	0.43	12	16	12	16	y	0.40	4	6	4	6	y	0.36	4	7	4	7	y	0.23	7	23	7	23	y	0.41	7	10	7	10	y	0.36	4	7	4	7	y	ENSMUSG00000061436.16	Hipk2	chr6	protein_coding	homeodomain interacting protein kinase 2
known_NIR_15736	chr6	39314076	39324223	-	39322930	39324223	A3SS&ES	ENSMUST00000090243.8	known	0.00	0	26	0	26	n	0.00	0	33	0	33	n	0.05	6	108	6	108	y	0.00	0	25	0	25	n	0.00	0	72	0	72	n	0.07	2	26	2	26	y	0.06	3	44	3	44	y	0.00	0	31	0	31	n	0.00	0	25	0	25	n	0.04	2	54	2	54	y	0.12	4	28	4	28	y	0.00	0	39	0	39	n	ENSMUSG00000029924.13	Slc37a3	chr6	protein_coding	solute carrier family 37 (glycerol-3-phosphate transporter), member 3
known_NIR_15737	chr6	39329684	39334334	-	39329684;39332056	39331911;39334334	ES	ENSMUST00000090243.8	known	0.00	0	29.0	0	29;29	n	0.00	0	19.5	0	26;13	n	0.05	5	101.5	5	99;104	y	0.06	2	32.5	2	30;35	y	0.02	1	49.5	1	53;46	n	0.04	2	45.5	2	48;43	y	0.00	0	37.0	0	44;30	n	0.02	1	41.0	1	48;34	n	0.00	0	23.5	0	25;22	n	0.03	1	30.5	1	28;33	n	0.00	0	24.0	0	34;14	n	0.00	0	41.0	0	45;37	n	ENSMUSG00000029924.13	Slc37a3	chr6	protein_coding	solute carrier family 37 (glycerol-3-phosphate transporter), member 3
known_NIR_15738	chr6	39329684	39334334	-	39332056	39334334	3pMXE	ENSMUST00000202400.4	known	0.00	0	29	0	29	n	0.00	0	13	0	13	n	0.05	5	104	5	104	y	0.05	2	35	2	35	y	0.02	1	46	1	46	n	0.04	2	43	2	43	y	0.00	0	30	0	30	n	0.03	1	34	1	34	n	0.00	0	22	0	22	n	0.03	1	33	1	33	n	0.00	0	14	0	14	n	0.00	0	37	0	37	n	ENSMUSG00000029924.13	Slc37a3	chr6	protein_coding	solute carrier family 37 (glycerol-3-phosphate transporter), member 3
known_NIR_15739	chr6	39343980;39344700	39344578;39349013	-	39343980	39349013	cassetteExon	ENSMUST00000202400.4	known	0.29	2.0	5	3;1	5	n	0.20	1.0	4	2;0	4	n	0.60	7.5	5	12;3	5	y	0.20	1.0	4	1;1	4	n	0.78	3.5	1	6;1	1	n	0.36	4.5	8	8;1	8	n	0.56	2.5	2	2;3	2	n	0.37	3.5	6	6;1	6	n	0.45	2.5	3	4;1	3	n	0.14	1.0	6	2;0	6	n	0.50	1.0	1	1;1	1	n	0.64	7.0	4	11;3	4	y	ENSMUSG00000029924.13	Slc37a3	chr6	protein_coding	solute carrier family 37 (glycerol-3-phosphate transporter), member 3
known_NIR_15740	chr6	39343980;39344700	39344578;39354553	-	39343980	39354553	cassetteExon	ENSMUST00000090243.8	known	0.16	1.5	8	3;0	8	n	0.12	1.0	7	2;0	7	n	0.30	7.0	16	12;2	16	y	0.09	1.0	10	1;1	10	n	0.17	4.0	19	6;2	19	y	0.23	5.0	17	8;2	17	y	0.13	1.5	10	2;1	10	n	0.18	3.5	16	6;1	16	n	0.18	2.0	9	4;0	9	n	0.07	1.0	13	2;0	13	n	0.33	0.5	1	1;0	1	n	0.26	6.0	17	11;1	17	n	ENSMUSG00000029924.13	Slc37a3	chr6	protein_coding	solute carrier family 37 (glycerol-3-phosphate transporter), member 3
known_NIR_15741	chr6	39343980;39344700	39344578;39354553	-	39343980;39349861	39349013;39354553	MXE	ENSMUST00000202400.4	known	0.38	1.5	2.5	3;0	5;0	n	0.33	1.0	2.0	2;0	4;0	n	0.67	7.0	3.5	12;2	5;2	y	0.33	1.0	2.0	1;1	4;0	n	0.62	4.0	2.5	6;2	1;4	n	0.42	5.0	7.0	8;2	8;6	y	0.50	1.5	1.5	2;1	2;1	n	0.54	3.5	3.0	6;1	6;0	n	0.40	2.0	3.0	4;0	3;3	n	0.20	1.0	4.0	2;0	6;2	n	0.33	0.5	1.0	1;0	1;1	n	0.67	6.0	3.0	11;1	4;2	n	ENSMUSG00000029924.13	Slc37a3	chr6	protein_coding	solute carrier family 37 (glycerol-3-phosphate transporter), member 3
known_NIR_15742	chr6	39349861	39354553	-	39343980	39354553	A3SS	ENSMUST00000090243.8	known	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.11	2	16	2	16	y	0.00	0	10	0	10	n	0.17	4	19	4	19	y	0.26	6	17	6	17	y	0.09	1	10	1	10	n	0.00	0	16	0	16	n	0.25	3	9	3	9	y	0.13	2	13	2	13	y	0.50	1	1	1	1	n	0.11	2	17	2	17	y	ENSMUSG00000029924.13	Slc37a3	chr6	protein_coding	solute carrier family 37 (glycerol-3-phosphate transporter), member 3
known_NIR_15743	chr6	39387150	39396774	-	39387150	39397033	A5SS	ENSMUST00000031985.13	known	0.19	5	21	5	21	y	0.14	5	31	5	31	y	0.08	4	48	4	48	y	0.07	3	37	3	37	y	0.06	3	48	3	48	y	0.06	2	32	2	32	y	0.09	4	41	4	41	y	0.14	5	30	5	30	y	0.00	0	20	0	20	n	0.12	6	42	6	42	y	0.18	7	32	7	32	y	0.07	3	37	3	37	y	ENSMUSG00000029922.16	Mkrn1	chr6	protein_coding	makorin, ring finger protein, 1
known_NIR_15744	chr6	39569646	39573385	+	39564782	39573385	A5SS	ENSMUST00000126621.3	known	1.00	429	1	429	1	n	1.00	428	2	428	2	y	1.00	390	1	390	1	n	1.00	377	0	377	0	n	1.00	478	0	478	0	n	1.00	278	0	278	0	n	1.00	551	0	551	0	n	1.00	255	0	255	0	n	1.00	423	0	423	0	n	1.00	626	0	626	0	n	1.00	525	0	525	0	n	1.00	512	0	512	0	n	ENSMUSG00000107071.2	Gm42420	chr6	protein_coding	predicted gene, 42420
known_NIR_15745	chr6	39569737	39573385	+	39569646	39573385	A5SS	ENSMUST00000135671.8	known	0.01	3	429	3	429	y	0.00	1	428	1	428	n	0.01	5	390	5	390	y	0.01	3	377	3	377	y	0.02	9	478	9	478	y	0.01	3	278	3	278	y	0.02	9	551	9	551	y	0.01	3	255	3	255	y	0.01	3	423	3	423	y	0.00	2	626	2	626	y	0.00	2	525	2	525	y	0.01	4	512	4	512	y	ENSMUSG00000002416.14	Ndufb2	chr6	protein_coding	NADH:ubiquinone oxidoreductase subunit B2
known_NIR_15746	chr6	39574280	39575200	+	39573529	39575200	A5SS	ENSMUST00000135671.8	known	0.00	2	586	2	586	y	0.00	0	651	0	651	n	0.02	9	570	9	570	y	0.01	3	582	3	582	y	0.01	5	695	5	695	y	0.01	2	329	2	329	y	0.00	1	823	1	823	n	0.01	2	333	2	333	y	0.00	2	571	2	571	y	0.00	2	803	2	803	y	0.00	1	719	1	719	n	0.00	0	743	0	743	n	ENSMUSG00000002416.14	Ndufb2	chr6	protein_coding	NADH:ubiquinone oxidoreductase subunit B2
known_NIR_15747	chr6	39575299	39576326	+	39575295	39576326	A5SS	ENSMUST00000135671.8	known	0.29	105	261	105	261	y	0.23	100	336	100	336	y	0.18	66	305	66	305	y	0.29	95	236	95	236	y	0.26	114	332	114	332	y	0.13	26	172	26	172	y	0.27	125	341	125	341	y	0.20	42	168	42	168	y	0.26	92	266	92	266	y	0.27	139	371	139	371	y	0.27	119	330	119	330	y	0.27	129	350	129	350	y	ENSMUSG00000002416.14	Ndufb2	chr6	protein_coding	NADH:ubiquinone oxidoreductase subunit B2
known_NIR_15748	chr6	39625420	39628539	-	39625420;39625790	39625755;39628539	ES	ENSMUST00000002487.15	known	1.00	4	0.0	4	0;0	n	1.00	2	0.0	2	0;0	n	0.84	13	2.5	13	2;3	y	0.91	10	1.0	10	1;1	n	1.00	3	0.0	3	0;0	n	1.00	7	0.0	7	0;0	n	0.80	4	1.0	4	1;1	n	1.00	11	0.0	11	0;0	n	1.00	6	0.0	6	0;0	n	0.94	8	0.5	8	0;1	n	0.00	0	1.5	0	1;2	n	0.67	6	3.0	6	3;3	y	ENSMUSG00000002413.16	Braf	chr6	protein_coding	Braf transforming gene
known_NIR_15749	chr6	3968050	3974531	-	3968050	3968237	5pMXE	ENSMUST00000031674.11	known	0.88	99	14	99	14	y	0.85	55	10	55	10	y	0.64	85	47	85	47	y	0.89	108	13	108	13	y	0.80	87	22	87	22	y	0.83	57	12	57	12	y	0.79	74	20	74	20	y	0.86	70	11	70	11	y	0.89	97	12	97	12	y	0.86	150	24	150	24	y	0.94	95	6	95	6	y	0.93	125	10	125	10	y	ENSMUSG00000029664.11	Tfpi2	chr6	protein_coding	tissue factor pathway inhibitor 2
known_NIR_15750	chr6	3968050	3988823	-	3968050	3968237	5pMXE	ENSMUST00000031674.11	known	0.39	9	14	9	14	y	0.50	10	10	10	10	y	0.25	16	47	16	47	y	0.41	9	13	9	13	y	0.31	10	22	10	22	y	0.40	8	12	8	12	y	0.31	9	20	9	20	y	0.45	9	11	9	11	y	0.40	8	12	8	12	y	0.29	10	24	10	24	y	0.57	8	6	8	6	y	0.38	6	10	6	10	y	ENSMUSG00000029664.11	Tfpi2	chr6	protein_coding	tissue factor pathway inhibitor 2
known_NIR_15751	chr6	3968050;3974650	3974531;3988823	-	3968050	3988823	cassetteExon	ENSMUST00000203257.2	known	0.91	90.5	9	99;82	9	y	0.86	62.5	10	55;70	10	y	0.89	130.5	16	85;176	16	y	0.93	122.0	9	108;136	9	y	0.92	109.0	10	87;131	10	y	0.89	65.5	8	57;74	8	y	0.91	86.5	9	74;99	9	y	0.90	80.5	9	70;91	9	y	0.91	81.5	8	97;66	8	y	0.93	128.5	10	150;107	10	y	0.92	88.5	8	95;82	8	y	0.95	119.5	6	125;114	6	y	ENSMUSG00000029664.11	Tfpi2	chr6	protein_coding	tissue factor pathway inhibitor 2
known_NIR_15752	chr6	39779478	39782421	-	39779478	39782305	A5SS	ENSMUST00000031978.9	known	0.05	17	347	17	347	y	0.06	22	344	22	344	y	0.05	16	307	16	307	y	0.05	18	320	18	320	y	0.05	18	362	18	362	y	0.07	15	196	15	196	y	0.06	28	432	28	432	y	0.03	6	212	6	212	y	0.06	19	277	19	277	y	0.07	31	394	31	394	y	0.05	17	334	17	334	y	0.04	13	324	13	324	y	ENSMUSG00000029918.10	Mrps33	chr6	protein_coding	mitochondrial ribosomal protein S33
known_NIR_15753	chr6	40448759	40449005	+	40448393	40449005	A5SS	ENSMUST00000114779.9	known	0.31	22	48	22	48	y	0.27	15	40	15	40	y	0.20	12	47	12	47	y	0.28	18	47	18	47	y	0.37	28	48	28	48	y	0.29	9	22	9	22	y	0.31	23	51	23	51	y	0.29	10	24	10	24	y	0.38	21	34	21	34	y	0.35	28	51	28	51	y	0.41	28	41	28	41	y	0.38	24	40	24	40	y	ENSMUSG00000029911.15	Ssbp1	chr6	protein_coding	single-stranded DNA binding protein 1
known_NIR_15754	chr6	40448769	40449005	+	40448393	40449005	A5SS	ENSMUST00000114779.9	known	0.04	2	48	2	48	y	0.07	3	40	3	40	y	0.00	0	47	0	47	n	0.06	3	47	3	47	y	0.00	0	48	0	48	n	0.12	3	22	3	22	y	0.00	0	51	0	51	n	0.00	0	24	0	24	n	0.06	2	34	2	34	y	0.02	1	51	1	51	n	0.02	1	41	1	41	n	0.07	3	40	3	40	y	ENSMUSG00000029911.15	Ssbp1	chr6	protein_coding	single-stranded DNA binding protein 1
known_NIR_15755	chr6	40448769	40449005	+	40448759	40449005	A5SS	ENSMUST00000117411.8	known	0.08	2	22	2	22	y	0.17	3	15	3	15	y	0.00	0	12	0	12	n	0.14	3	18	3	18	y	0.00	0	28	0	28	n	0.25	3	9	3	9	y	0.00	0	23	0	23	n	0.00	0	10	0	10	n	0.09	2	21	2	21	y	0.03	1	28	1	28	n	0.03	1	28	1	28	n	0.11	3	24	3	24	y	ENSMUSG00000029911.15	Ssbp1	chr6	protein_coding	single-stranded DNA binding protein 1
known_NIR_15756	chr6	4080017	4086777	-	4080017;4082582	4082458;4086777	ES	ENSMUST00000049166.5	known	0.00	0	276.0	0	259;293	n	0.01	2	271.0	2	261;281	y	0.01	3	472.5	3	426;519	y	0.00	0	292.0	0	235;349	n	0.00	2	402.5	2	348;457	y	0.00	1	264.0	1	239;289	n	0.00	1	393.0	1	355;431	n	0.00	1	267.0	1	257;277	n	0.00	0	282.5	0	243;322	n	0.01	2	388.5	2	362;415	y	0.00	0	344.0	0	319;369	n	0.00	0	326.5	0	299;354	n	ENSMUSG00000032757.7	Bet1	chr6	protein_coding	Bet1 golgi vesicular membrane trafficking protein
known_NIR_15757	chr6	4080017	4086777	-	4082582	4086777	3pMXE	ENSMUST00000150319.2	known	0.00	0	293	0	293	n	0.01	2	281	2	281	y	0.01	3	519	3	519	y	0.00	0	349	0	349	n	0.00	2	457	2	457	y	0.00	1	289	1	289	n	0.00	1	431	1	431	n	0.00	1	277	1	277	n	0.00	0	322	0	322	n	0.00	2	415	2	415	y	0.00	0	369	0	369	n	0.00	0	354	0	354	n	ENSMUSG00000032757.7	Bet1	chr6	protein_coding	Bet1 golgi vesicular membrane trafficking protein
known_NIR_15758	chr6	4081632	4082458	-	4080017	4082458	A3SS	ENSMUST00000049166.5	known	0.01	3	259	3	259	y	0.00	0	261	0	261	n	0.03	13	426	13	426	y	0.00	1	235	1	235	n	0.01	3	348	3	348	y	0.01	3	239	3	239	y	0.02	6	355	6	355	y	0.04	11	257	11	257	y	0.01	2	243	2	243	y	0.02	6	362	6	362	y	0.00	0	319	0	319	n	0.01	3	299	3	299	y	ENSMUSG00000032757.7	Bet1	chr6	protein_coding	Bet1 golgi vesicular membrane trafficking protein
known_NIR_15759	chr6	4081632	4082458	-	4081635	4082458	A3SS	ENSMUST00000145696.4	known	0.30	3	7	3	7	y	-	-	-	-	-	-	0.39	13	20	13	20	y	0.33	1	2	1	2	n	0.33	3	6	3	6	n	0.33	3	6	3	6	n	0.50	6	6	6	6	y	0.50	11	11	11	11	y	0.40	2	3	2	3	n	1.00	6	0	6	0	n	-	-	-	-	-	-	0.30	3	7	3	7	y	ENSMUSG00000032757.7	Bet1	chr6	protein_coding	Bet1 golgi vesicular membrane trafficking protein
known_NIR_15760	chr6	4081635	4082458	-	4080017	4082458	A3SS	ENSMUST00000049166.5	known	0.03	7	259	7	259	y	0.00	0	261	0	261	n	0.04	20	426	20	426	y	0.01	2	235	2	235	y	0.02	6	348	6	348	y	0.02	6	239	6	239	y	0.02	6	355	6	355	y	0.04	11	257	11	257	y	0.01	3	243	3	243	y	0.00	0	362	0	362	n	0.00	0	319	0	319	n	0.02	7	299	7	299	y	ENSMUSG00000032757.7	Bet1	chr6	protein_coding	Bet1 golgi vesicular membrane trafficking protein
known_NIR_15761	chr6	42224780	42226313	+	42224703	42226313	A5SS	ENSMUST00000031897.8	known	0.00	0	463	0	463	n	0.00	0	507	0	507	n	0.00	0	150	0	150	n	0.00	1	493	1	493	n	0.00	2	565	2	565	y	0.00	0	120	0	120	n	0.00	3	656	3	656	y	0.00	1	213	1	213	n	0.00	2	477	2	477	y	0.00	2	748	2	748	y	0.00	3	631	3	631	y	0.00	0	702	0	702	n	ENSMUSG00000029864.8	Gstk1	chr6	protein_coding	glutathione S-transferase kappa 1
known_NIR_15762	chr6	42327053	42327191	+	42326639	42327191	A5SS	ENSMUST00000203329.3	known	1.00	11	0	11	0	n	1.00	10	0	10	0	n	0.90	9	1	9	1	n	0.86	6	1	6	1	n	0.73	11	4	11	4	y	0.78	7	2	7	2	n	0.87	13	2	13	2	y	0.67	2	1	2	1	n	1.00	9	0	9	0	n	0.86	12	2	12	2	y	0.88	15	2	15	2	y	0.93	14	1	14	1	n	ENSMUSG00000029860.17	Zyx	chr6	protein_coding	zyxin
known_NIR_15763	chr6	42327410	42328409	+	42327410	42327880	3pMXE	ENSMUST00000203329.3	known	0.21	5	19	5	19	y	0.12	3	22	3	22	y	0.12	5	38	5	38	y	0.16	7	37	7	37	y	0.10	5	44	5	44	y	0.25	3	9	3	9	y	0.12	5	36	5	36	y	0.15	4	23	4	23	y	0.14	2	12	2	12	y	0.09	4	43	4	43	y	0.18	6	27	6	27	y	0.03	1	35	1	35	n	ENSMUSG00000029860.17	Zyx	chr6	protein_coding	zyxin
known_NIR_15764	chr6	42327410	42328409	+	42327410;42328082	42327880;42328409	ES	ENSMUST00000070635.13	known	0.26	5	14.5	5	19;10	y	0.19	3	13.0	3	22;4	y	0.16	5	26.5	5	38;15	y	0.26	7	19.5	7	37;2	y	0.17	5	25.0	5	44;6	y	0.20	3	12.0	3	9;15	y	0.19	5	21.5	5	36;7	y	0.22	4	14.0	4	23;5	y	0.21	2	7.5	2	12;3	y	0.13	4	26.0	4	43;9	y	0.29	6	15.0	6	27;3	y	0.05	1	19.0	1	35;3	n	ENSMUSG00000029860.17	Zyx	chr6	protein_coding	zyxin
known_NIR_15765	chr6	42327410;42328296	42327880;42328409	+	42327410	42328409	cassetteExon	ENSMUST00000203626.2	known	0.88	36.0	5	19;53	5	y	0.93	38.0	3	22;54	3	y	0.91	51.0	5	38;64	5	y	0.85	41.0	7	37;45	7	y	0.93	63.0	5	44;82	5	y	0.88	23.0	3	9;37	3	y	0.90	46.0	5	36;56	5	y	0.86	24.0	4	23;25	4	y	0.94	29.0	2	12;46	2	y	0.93	54.5	4	43;66	4	y	0.88	45.0	6	27;63	6	y	0.98	45.5	1	35;56	1	n	ENSMUSG00000029860.17	Zyx	chr6	protein_coding	zyxin
known_NIR_15766	chr6	42328082	42328409	+	42328082;42328296	42328204;42328409	ES	ENSMUST00000203846.3	known	0.19	10	43.5	10	34;53	y	0.08	4	44.5	4	35;54	y	0.21	15	55.0	15	46;64	y	0.05	2	40.5	2	36;45	y	0.09	6	63.5	6	45;82	y	0.34	15	29.0	15	21;37	y	0.13	7	45.5	7	35;56	y	0.20	5	19.5	5	14;25	y	0.07	3	41.0	3	36;46	y	0.14	9	54.0	9	42;66	y	0.06	3	45.0	3	27;63	y	0.07	3	41.0	3	26;56	y	ENSMUSG00000029860.17	Zyx	chr6	protein_coding	zyxin
known_NIR_15767	chr6	42332200	42332851	+	42328903	42332851	A5SS	ENSMUST00000203652.3	known	0.00	0	98	0	98	n	0.01	1	95	1	95	n	0.00	0	113	0	113	n	0.00	0	83	0	83	n	0.00	0	100	0	100	n	0.00	0	35	0	35	n	0.00	0	83	0	83	n	0.00	0	52	0	52	n	0.00	0	67	0	67	n	0.02	2	106	2	106	y	0.00	0	99	0	99	n	0.00	0	95	0	95	n	ENSMUSG00000029860.17	Zyx	chr6	protein_coding	zyxin
known_NIR_15768	chr6	42334919	42335777	+	42334919	42335103	3pMXE	ENSMUST00000203401.3	known	1.00	2	0	2	0	n	0.50	5	5	5	5	y	1.00	2	0	2	0	n	1.00	2	0	2	0	n	1.00	2	0	2	0	n	-	-	-	-	-	-	1.00	2	0	2	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000029860.17	Zyx	chr6	protein_coding	zyxin
known_NIR_15769	chr6	42668126	42669867	-	42663892	42669867	A3SS	ENSMUST00000121083.8	known	-	-	-	-	-	-	-	-	-	-	-	-	0.40	4	6	4	6	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000036667.15	Tcaf1	chr6	protein_coding	TRPM8 channel-associated factor 1
known_NIR_15770	chr6	43400666	43465809	-	43400666;43446082	43445936;43465809	ES	ENSMUST00000067888.14	known	0.26	6	17.5	6	22;13	y	0.10	2	18.5	2	19;18	y	0.00	0	20.0	0	27;13	n	0.06	2	34.0	2	41;27	y	0.22	9	32.0	9	41;23	y	0.00	0	18.0	0	18;18	n	0.03	1	28.0	1	35;21	n	0.00	0	21.0	0	26;16	n	0.00	0	20.5	0	21;20	n	0.07	2	28.5	2	28;29	y	0.38	9	14.5	9	15;14	y	0.10	4	37.5	4	52;23	y	ENSMUSG00000029735.18	Tpk1	chr6	protein_coding	thiamine pyrophosphokinase
known_NIR_15771	chr6	43570077	43588248	-	43536946	43588248	A3SS	ENSMUST00000067888.14	known	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.14	2	12	2	12	y	0.09	2	20	2	20	y	0.00	0	19	0	19	n	0.00	0	4	0	4	n	0.00	0	26	0	26	n	0.13	2	13	2	13	y	0.00	0	9	0	9	n	0.05	1	18	1	18	n	0.00	0	18	0	18	n	0.06	1	15	1	15	n	ENSMUSG00000029735.18	Tpk1	chr6	protein_coding	thiamine pyrophosphokinase
known_NIR_15772	chr6	4631598	4635746	+	4631598;4634103	4634002;4635746	ES	ENSMUST00000015333.12	known	0.00	0	35.0	0	33;37	n	0.08	2	22.0	2	19;25	y	0.11	6	46.5	6	45;48	y	0.05	2	37.5	2	32;43	y	0.08	5	61.5	5	62;61	y	0.14	4	25.5	4	16;35	y	0.02	1	43.5	1	46;41	n	0.08	3	33.0	3	32;34	y	0.04	2	42.5	2	42;43	y	0.07	4	53.5	4	56;51	y	0.10	4	37.5	4	39;36	y	0.11	6	50.0	6	47;53	y	ENSMUSG00000015189.13	Casd1	chr6	protein_coding	CAS1 domain containing 1
known_NIR_15773	chr6	4689767	4691429	-	4689767;4690495	4690469;4691429	ES	ENSMUST00000115577.9	known	0.07	1	13.0	1	13;13	n	0.06	1	16.5	1	15;18	n	0.14	4	24.0	4	26;22	y	0.00	0	3.0	0	3;3	n	0.04	1	22.0	1	18;26	n	0.29	2	5.0	2	6;4	y	0.05	1	21.0	1	23;19	n	0.22	2	7.0	2	6;8	y	0.00	0	14.0	0	14;14	n	0.15	3	17.5	3	20;15	y	0.00	0	9.5	0	11;8	n	0.05	1	20.5	1	20;21	n	ENSMUSG00000004631.16	Sgce	chr6	protein_coding	sarcoglycan, epsilon
known_NIR_15774	chr6	47431417	47461678	+	47430963	47461678	A5SS	ENSMUST00000152547.6	known	0.95	40	2	40	2	y	1.00	24	0	24	0	n	0.99	101	1	101	1	n	1.00	74	0	74	0	n	0.96	94	4	94	4	y	1.00	61	0	61	0	n	1.00	76	0	76	0	n	1.00	68	0	68	0	n	0.97	36	1	36	1	n	1.00	40	0	40	0	n	0.92	33	3	33	3	y	1.00	67	0	67	0	n	ENSMUSG00000029686.16	Cul1	chr6	protein_coding	cullin 1
known_NIR_15775	chr6	47517789	47519300	-	47517789;47518904	47518779;47519300	ES	ENSMUST00000081721.13	known	0.36	2	3.5	2	3;4	n	0.30	3	7.0	3	9;5	y	0.34	5	9.5	5	10;9	y	0.15	1	5.5	1	6;5	n	0.17	2	9.5	2	10;9	y	0.00	0	2.5	0	4;1	n	0.09	1	10.0	1	10;10	n	0.18	1	4.5	1	5;4	n	0.47	4	4.5	4	1;8	n	0.32	3	6.5	3	8;5	y	0.12	1	7.5	1	12;3	n	0.13	1	6.5	1	10;3	n	ENSMUSG00000029687.17	Ezh2	chr6	protein_coding	enhancer of zeste 2 polycomb repressive complex 2 subunit
known_NIR_15776	chr6	47535228	47553497	-	47535228	47553470	A5SS	ENSMUST00000081721.13	known	0.25	1	3	1	3	n	0.60	3	2	3	2	n	0.40	2	3	2	3	n	0.50	2	2	2	2	n	0.62	5	3	5	3	n	0.00	0	1	0	1	n	0.25	2	6	2	6	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.10	1	9	1	9	n	0.25	1	3	1	3	n	0.20	2	8	2	8	y	ENSMUSG00000029687.17	Ezh2	chr6	protein_coding	enhancer of zeste 2 polycomb repressive complex 2 subunit
known_NIR_15777	chr6	47784145	47790151	-	47784145;47785277	47785109;47790151	ES	ENSMUST00000077290.9	known	0.00	1	474.5	1	431;518	n	0.00	0	392.5	0	345;440	n	0.01	10	1331.5	10	1162;1501	y	0.00	0	559.0	0	466;652	n	0.00	0	1408.5	0	1262;1555	n	0.00	0	1066.5	0	946;1187	n	0.00	3	651.5	3	562;741	y	0.00	4	1110.5	4	965;1256	y	0.00	0	475.0	0	434;516	n	0.00	0	698.0	0	598;798	n	0.00	2	477.5	2	414;541	y	0.00	0	646.0	0	577;715	n	ENSMUSG00000025823.10	Pdia4	chr6	protein_coding	protein disulfide isomerase associated 4
known_NIR_15778	chr6	47934658	47939459	+	47934536	47939459	A5SS	ENSMUST00000101445.11	known	1.00	3	0	3	0	n	0.50	3	3	3	3	n	0.33	1	2	1	2	n	0.31	4	9	4	9	y	0.88	7	1	7	1	n	0.00	0	1	0	1	n	0.75	6	2	6	2	n	0.00	0	1	0	1	n	1.00	3	0	3	0	n	-	-	-	-	-	-	0.60	3	2	3	2	n	1.00	4	0	4	0	n	ENSMUSG00000045466.19	Zfp956	chr6	protein_coding	zinc finger protein 956
known_NIR_15779	chr6	48006407	48014489	-	48006308	48014489	A3SS	ENSMUST00000114583.8	known	0.00	0	18	0	18	n	0.04	1	26	1	26	n	0.10	4	35	4	35	y	0.00	0	21	0	21	n	0.10	4	36	4	36	y	0.12	2	15	2	15	y	0.00	0	28	0	28	n	0.04	1	22	1	22	n	0.08	1	12	1	12	n	0.10	3	26	3	26	y	0.09	2	20	2	20	y	0.00	0	26	0	26	n	ENSMUSG00000071477.11	Zfp777	chr6	protein_coding	zinc finger protein 777
known_NIR_15780	chr6	48041883	48043363	-	48041886	48043363	A3SS	ENSMUST00000073124.9	known	0.27	3	8	3	8	y	0.60	6	4	6	4	y	0.44	7	9	7	9	y	0.64	16	9	16	9	y	0.71	20	8	20	8	y	0.53	9	8	9	8	y	0.56	15	12	15	12	y	0.42	5	7	5	7	y	0.43	3	4	3	4	n	0.65	20	11	20	11	y	0.75	6	2	6	2	n	0.67	12	6	12	6	y	ENSMUSG00000057691.9	Zfp746	chr6	protein_coding	zinc finger protein 746
known_NIR_15781	chr6	48041883	48044103	-	48041883;48043488	48043363;48044103	ES	ENSMUST00000203609.3	known	0.00	0	19.0	0	3;35	n	0.00	0	19.0	0	6;32	n	0.00	0	24.5	0	7;42	n	0.00	0	23.0	0	16;30	n	0.05	2	41.0	2	20;62	y	0.00	0	27.5	0	9;46	n	0.00	0	30.0	0	15;45	n	0.00	0	23.0	0	5;41	n	0.00	0	13.5	0	3;24	n	0.00	0	28.5	0	20;37	n	0.00	0	17.5	0	6;29	n	0.00	0	24.0	0	12;36	n	ENSMUSG00000057691.9	Zfp746	chr6	protein_coding	zinc finger protein 746
known_NIR_15782	chr6	48041883	48044103	-	48043488	48044103	A3SS&ES	ENSMUST00000073124.9	known	0.00	0	35	0	35	n	0.00	0	32	0	32	n	0.00	0	42	0	42	n	0.00	0	30	0	30	n	0.03	2	62	2	62	y	0.00	0	46	0	46	n	0.00	0	45	0	45	n	0.00	0	41	0	41	n	0.00	0	24	0	24	n	0.00	0	37	0	37	n	0.00	0	29	0	29	n	0.00	0	36	0	36	n	ENSMUSG00000057691.9	Zfp746	chr6	protein_coding	zinc finger protein 746
known_NIR_15783	chr6	48372821	48379818	+	48372821	48379805	A3SS	ENSMUST00000114571.8	known	0.57	4	3	4	3	n	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.44	4	5	4	5	n	0.60	6	4	6	4	y	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.67	4	2	4	2	n	0.40	4	6	4	6	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.62	8	5	8	5	y	ENSMUSG00000042810.15	Krba1	chr6	protein_coding	KRAB-A domain containing 1
known_NIR_15784	chr6	48381074	48382171	+	48381074	48382168	A3SS	ENSMUST00000114571.8	known	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.15	2	11	2	11	y	0.00	0	21	0	21	n	0.14	1	6	1	6	n	0.00	0	12	0	12	n	0.17	2	10	2	10	y	0.00	0	16	0	16	n	0.12	2	15	2	15	y	0.00	0	5	0	5	n	0.09	2	21	2	21	y	ENSMUSG00000042810.15	Krba1	chr6	protein_coding	KRAB-A domain containing 1
known_NIR_15785	chr6	48382323	48383234	+	48382323	48383231	A3SS	ENSMUST00000114571.8	known	0.00	0	19	0	19	n	0.12	1	7	1	7	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.11	2	16	2	16	y	0.13	2	13	2	13	y	0.06	1	17	1	17	n	0.11	1	8	1	8	n	0.07	2	25	2	25	y	ENSMUSG00000042810.15	Krba1	chr6	protein_coding	KRAB-A domain containing 1
known_NIR_15786	chr6	48384756	48386104	+	48384756	48385463	3pMXE	ENSMUST00000148697.6	known	0.00	0	14	0	14	n	0.18	4	18	4	18	y	0.00	0	13	0	13	n	0.00	0	18	0	18	n	0.06	1	16	1	16	n	0.00	0	9	0	9	n	0.16	4	21	4	21	y	0.00	0	12	0	12	n	0.07	1	14	1	14	n	0.00	0	19	0	19	n	0.00	0	13	0	13	n	0.06	1	16	1	16	n	ENSMUSG00000042810.15	Krba1	chr6	protein_coding	KRAB-A domain containing 1
known_NIR_15787	chr6	48384756	48386104	+	48384756;48385660	48385463;48386104	ES	ENSMUST00000114571.8	known	0.00	0	15.5	0	14;17	n	0.23	4	13.5	4	18;9	y	0.00	0	13.5	0	13;14	n	0.00	0	16.0	0	18;14	n	0.04	1	24.5	1	16;33	n	0.00	0	7.5	0	9;6	n	0.16	4	20.5	4	21;20	y	0.00	0	11.5	0	12;11	n	0.10	1	9.5	1	14;5	n	0.00	0	17.0	0	19;15	n	0.00	0	11.5	0	13;10	n	0.06	1	15.0	1	16;14	n	ENSMUSG00000042810.15	Krba1	chr6	protein_coding	KRAB-A domain containing 1
known_NIR_15788	chr6	48416291	48418881	-	48404813	48418881	A3SS	ENSMUST00000114566.8	known	0.14	3	18	3	18	y	0.11	3	24	3	24	y	-	-	-	-	-	-	0.19	4	17	4	17	y	0.06	3	46	3	46	y	0.44	4	5	4	5	n	0.11	4	33	4	33	y	0.17	1	5	1	5	n	0.04	1	24	1	24	n	0.10	5	45	5	45	y	0.09	3	29	3	29	y	0.10	6	52	6	52	y	ENSMUSG00000068551.13	Zfp467	chr6	protein_coding	zinc finger protein 467
known_NIR_15789	chr6	48416291	48418881	-	48418765	48418881	A3SS&ES	ENSMUST00000114563.8	known	0.30	3	7	3	7	y	0.60	3	2	3	2	n	0.00	0	7	0	7	n	0.67	4	2	4	2	n	0.21	3	11	3	11	y	0.50	4	4	4	4	n	0.25	4	12	4	12	y	0.12	1	7	1	7	n	0.20	1	4	1	4	n	0.36	5	9	5	9	y	0.60	3	2	3	2	n	0.32	6	13	6	13	y	ENSMUSG00000068551.13	Zfp467	chr6	protein_coding	zinc finger protein 467
known_NIR_15790	chr6	48416388	48418881	-	48404813	48418881	A3SS	ENSMUST00000114566.8	known	0.47	16	18	16	18	y	0.29	10	24	10	24	y	1.00	9	0	9	0	n	0.32	8	17	8	17	y	0.25	15	46	15	46	y	0.64	9	5	9	5	y	0.21	9	33	9	33	y	0.64	9	5	9	5	y	0.40	16	24	16	24	y	0.33	22	45	22	45	y	0.19	7	29	7	29	y	0.28	20	52	20	52	y	ENSMUSG00000068551.13	Zfp467	chr6	protein_coding	zinc finger protein 467
known_NIR_15791	chr6	48416388	48418881	-	48416291	48418881	A3SS	ENSMUST00000114559.8	known	0.84	16	3	16	3	y	0.77	10	3	10	3	y	1.00	9	0	9	0	n	0.67	8	4	8	4	y	0.83	15	3	15	3	y	0.69	9	4	9	4	y	0.69	9	4	9	4	y	0.90	9	1	9	1	n	0.94	16	1	16	1	n	0.81	22	5	22	5	y	0.70	7	3	7	3	y	0.77	20	6	20	6	y	ENSMUSG00000068551.13	Zfp467	chr6	protein_coding	zinc finger protein 467
known_NIR_15792	chr6	48416388	48418881	-	48418765	48418881	A3SS&ES	ENSMUST00000114563.8	known	0.70	16	7	16	7	y	0.83	10	2	10	2	y	0.56	9	7	9	7	y	0.80	8	2	8	2	y	0.58	15	11	15	11	y	0.69	9	4	9	4	y	0.43	9	12	9	12	y	0.56	9	7	9	7	y	0.80	16	4	16	4	y	0.71	22	9	22	9	y	0.78	7	2	7	2	n	0.61	20	13	20	13	y	ENSMUSG00000068551.13	Zfp467	chr6	protein_coding	zinc finger protein 467
known_NIR_15793	chr6	48418765	48418881	-	48404813	48418881	A3SS	ENSMUST00000114566.8	known	0.28	7	18	7	18	y	0.08	2	24	2	24	y	1.00	7	0	7	0	n	0.11	2	17	2	17	y	0.19	11	46	11	46	y	0.44	4	5	4	5	n	0.27	12	33	12	33	y	0.58	7	5	7	5	y	0.14	4	24	4	24	y	0.17	9	45	9	45	y	0.06	2	29	2	29	y	0.20	13	52	13	52	y	ENSMUSG00000068551.13	Zfp467	chr6	protein_coding	zinc finger protein 467
known_NIR_15794	chr6	48419672	48419770	-	48419672	48422287	A5SS	ENSMUST00000114564.8	known	0.29	2	5	2	5	n	0.27	3	8	3	8	y	0.00	0	2	0	2	n	0.31	4	9	4	9	y	0.27	3	8	3	8	y	-	-	-	-	-	-	0.22	2	7	2	7	n	0.29	2	5	2	5	n	0.09	1	10	1	10	n	0.00	0	10	0	10	n	0.25	3	9	3	9	y	0.44	4	5	4	5	n	ENSMUSG00000068551.13	Zfp467	chr6	protein_coding	zinc finger protein 467
known_NIR_15795	chr6	48419672	48420346	-	48419836	48420346	3pMXE	ENSMUST00000140198.2	known	0.96	23	1	23	1	n	0.96	27	1	27	1	n	1.00	8	0	8	0	n	0.92	35	3	35	3	y	0.97	32	1	32	1	n	0.91	10	1	10	1	n	0.83	29	6	29	6	y	0.85	11	2	11	2	y	1.00	33	0	33	0	n	0.98	61	1	61	1	n	1.00	37	0	37	0	n	0.96	43	2	43	2	y	ENSMUSG00000068551.13	Zfp467	chr6	protein_coding	zinc finger protein 467
known_NIR_15796	chr6	48419672	48422287	-	48419672;48420421	48420346;48422287	ES	ENSMUST00000101443.10	known	0.20	5	19.5	5	23;16	y	0.26	8	22.5	8	27;18	y	0.24	2	6.5	2	8;5	y	0.24	9	28.5	9	35;22	y	0.21	8	30.5	8	32;29	y	0.00	0	8.0	0	10;6	n	0.23	7	23.5	7	29;18	y	0.31	5	11.0	5	11;11	y	0.31	10	22.5	10	33;12	y	0.18	10	45.0	10	61;29	y	0.22	9	32.5	9	37;28	y	0.12	5	35.0	5	43;27	y	ENSMUSG00000068551.13	Zfp467	chr6	protein_coding	zinc finger protein 467
known_NIR_15797	chr6	48419672;48419836	48419770;48420346	-	48419672	48420346	cassetteExon	ENSMUST00000114566.8	known	0.06	1.5	23	2;1	23	n	0.07	2.0	27	3;1	27	n	0.00	0.0	8	0;0	8	n	0.09	3.5	35	4;3	35	y	0.06	2.0	32	3;1	32	n	0.05	0.5	10	0;1	10	n	0.12	4.0	29	2;6	29	y	0.15	2.0	11	2;2	11	y	0.01	0.5	33	1;0	33	n	0.01	0.5	61	0;1	61	n	0.04	1.5	37	3;0	37	n	0.07	3.0	43	4;2	43	y	ENSMUSG00000068551.13	Zfp467	chr6	protein_coding	zinc finger protein 467
known_NIR_15798	chr6	48420421	48421905	-	48420421	48420915	5pMXE	ENSMUST00000114566.8	known	0.10	1	9	1	9	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.43	3	4	3	4	n	0.00	0	1	0	1	n	0.75	3	1	3	1	n	0.00	0	2	0	2	n	0.50	5	5	5	5	y	0.40	2	3	2	3	n	0.73	8	3	8	3	y	0.79	11	3	11	3	y	ENSMUSG00000068551.13	Zfp467	chr6	protein_coding	zinc finger protein 467
known_NIR_15799	chr6	48420421	48421905	-	48420421	48422287	A5SS	ENSMUST00000101443.10	known	0.06	1	16	1	16	n	0.05	1	18	1	18	n	0.00	0	5	0	5	n	0.04	1	22	1	22	n	0.09	3	29	3	29	y	0.00	0	6	0	6	n	0.14	3	18	3	18	y	0.00	0	11	0	11	n	0.29	5	12	5	12	y	0.06	2	29	2	29	y	0.22	8	28	8	28	y	0.29	11	27	11	27	y	ENSMUSG00000068551.13	Zfp467	chr6	protein_coding	zinc finger protein 467
known_NIR_15800	chr6	48420421	48422287	-	48420421	48420915	5pMXE	ENSMUST00000114566.8	known	0.64	16	9	16	9	y	0.95	18	1	18	1	n	1.00	5	0	5	0	n	0.92	22	2	22	2	y	0.88	29	4	29	4	y	0.86	6	1	6	1	n	0.95	18	1	18	1	n	0.85	11	2	11	2	y	0.71	12	5	12	5	y	0.91	29	3	29	3	y	0.90	28	3	28	3	y	0.90	27	3	27	3	y	ENSMUSG00000068551.13	Zfp467	chr6	protein_coding	zinc finger protein 467
known_NIR_15801	chr6	48531827	48533889	+	48531916	48533889	A5SS	ENSMUST00000114545.8	known	0.43	3	4	3	4	n	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.00	0	7	0	7	n	0.17	1	5	1	5	n	0.29	2	5	2	5	n	0.18	2	9	2	9	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	ENSMUSG00000073096.12	Lrrc61	chr6	protein_coding	leucine rich repeat containing 61
known_NIR_15802	chr6	48531827	48545071	+	48534028	48545071	A5SS&ES	ENSMUST00000114545.8	known	0.11	1	8	1	8	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.17	1	5	1	5	n	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.17	3	15	3	15	y	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.14	2	12	2	12	y	0.00	0	2	0	2	n	0.00	0	14	0	14	n	ENSMUSG00000073096.12	Lrrc61	chr6	protein_coding	leucine rich repeat containing 61
known_NIR_15803	chr6	48531827;48534028	48533889;48545071	+	48531827	48545071	cassetteExon	ENSMUST00000101436.3	known	0.85	5.5	1	3;8	1	n	1.00	3.5	0	0;7	0	n	1.00	5.5	0	1;10	0	n	0.71	2.5	1	0;5	1	n	1.00	8.0	0	1;15	0	n	1.00	3.5	0	2;5	0	n	0.74	8.5	3	2;15	3	y	1.00	4.0	0	0;8	0	n	1.00	1.5	0	0;3	0	n	0.76	6.5	2	1;12	2	n	1.00	1.5	0	1;2	0	n	1.00	7.0	0	0;14	0	n	ENSMUSG00000073096.12	Lrrc61	chr6	protein_coding	leucine rich repeat containing 61
known_NIR_15804	chr6	48531895	48533889	+	48531916	48533889	A5SS	ENSMUST00000114545.8	known	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.12	1	7	1	7	n	0.29	2	5	2	5	n	0.00	0	5	0	5	n	0.25	3	9	3	9	y	0.50	1	1	1	1	n	0.00	0	4	0	4	n	0.50	5	5	5	5	y	0.50	1	1	1	1	n	0.50	1	1	1	1	n	ENSMUSG00000073096.12	Lrrc61	chr6	protein_coding	leucine rich repeat containing 61
known_NIR_15805	chr6	48531895	48545071	+	48534028	48545071	A5SS&ES	ENSMUST00000114545.8	known	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.00	0	15	0	15	n	0.00	0	8	0	8	n	0.25	1	3	1	3	n	0.14	2	12	2	12	y	0.00	0	2	0	2	n	0.00	0	14	0	14	n	ENSMUSG00000073096.12	Lrrc61	chr6	protein_coding	leucine rich repeat containing 61
known_NIR_15806	chr6	48531895;48534028	48533889;48545071	+	48531895	48545071	cassetteExon	ENSMUST00000204071.2	known	1.00	4.0	0	0;8	0	n	1.00	3.5	0	0;7	0	n	1.00	5.5	0	1;10	0	n	1.00	3.0	0	1;5	0	n	1.00	8.5	0	2;15	0	n	1.00	2.5	0	0;5	0	n	1.00	9.0	0	3;15	0	n	1.00	4.5	0	1;8	0	n	0.60	1.5	1	0;3	1	n	0.81	8.5	2	5;12	2	y	1.00	1.5	0	1;2	0	n	1.00	7.5	0	1;14	0	n	ENSMUSG00000073096.12	Lrrc61	chr6	protein_coding	leucine rich repeat containing 61
known_NIR_15807	chr6	48531916	48545071	+	48531916;48534028	48533889;48545071	ES	ENSMUST00000114545.8	known	0.25	2	6.0	2	4;8	y	0.00	0	5.0	0	3;7	n	0.12	1	7.0	1	4;10	n	0.14	1	6.0	1	7;5	n	0.23	3	10.0	3	5;15	y	0.17	1	5.0	1	5;5	n	0.33	6	12.0	6	9;15	y	0.00	0	4.5	0	1;8	n	0.00	0	3.5	0	4;3	n	0.32	4	8.5	4	5;12	y	0.57	2	1.5	2	1;2	n	0.00	0	7.5	0	1;14	n	ENSMUSG00000073096.12	Lrrc61	chr6	protein_coding	leucine rich repeat containing 61
known_NIR_15808	chr6	48531916	48545071	+	48534028	48545071	A5SS&ES	ENSMUST00000146245.4	known	0.20	2	8	2	8	y	0.00	0	7	0	7	n	0.09	1	10	1	10	n	0.17	1	5	1	5	n	0.17	3	15	3	15	y	0.17	1	5	1	5	n	0.29	6	15	6	15	y	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.25	4	12	4	12	y	0.50	2	2	2	2	n	0.00	0	14	0	14	n	ENSMUSG00000073096.12	Lrrc61	chr6	protein_coding	leucine rich repeat containing 61
known_NIR_15809	chr6	48546993	48547178	-	48546996	48547178	A3SS	ENSMUST00000009425.7	known	0.64	1170	665	1170	665	y	0.64	1362	772	1362	772	y	0.64	637	359	637	359	y	0.64	1163	658	1163	658	y	0.67	1090	535	1090	535	y	0.68	477	223	477	223	y	0.67	1369	683	1369	683	y	0.62	462	278	462	278	y	0.64	1126	635	1126	635	y	0.65	1656	886	1656	886	y	0.66	1847	958	1847	958	y	0.66	1576	828	1576	828	y	ENSMUSG00000009281.7	Rarres2	chr6	protein_coding	retinoic acid receptor responder (tazarotene induced) 2
known_NIR_15810	chr6	48549224	48549674	-	48549224	48549528	5pMXE	ENSMUST00000203541.3	known	0.00	4	1461	4	1461	y	0.00	7	1580	7	1580	y	0.01	9	864	9	864	y	0.00	6	1761	6	1761	y	0.01	8	1389	8	1389	y	0.01	7	507	7	507	y	0.01	9	1698	9	1698	y	0.00	3	604	3	604	y	0.00	6	1589	6	1589	y	0.00	7	2072	7	2072	y	0.00	6	2135	6	2135	y	0.00	9	2097	9	2097	y	ENSMUSG00000009281.7	Rarres2	chr6	protein_coding	retinoic acid receptor responder (tazarotene induced) 2
known_NIR_15811	chr6	48570986	48571796	+	48570986	48571725	A3SS	ENSMUST00000009420.15	known	0.61	22	14	22	14	y	0.53	17	15	17	15	y	0.63	22	13	22	13	y	0.46	26	31	26	31	y	0.60	48	32	48	32	y	0.58	11	8	11	8	y	0.53	32	28	32	28	y	0.38	10	16	10	16	y	0.63	32	19	32	19	y	0.43	19	25	19	25	y	0.49	18	19	18	19	y	0.54	33	28	33	28	y	ENSMUSG00000052751.17	Repin1	chr6	protein_coding	replication initiator 1
known_NIR_15812	chr6	48570986	48573227	+	48570986	48571725	3pMXE	ENSMUST00000130896.2	known	0.39	9	14	9	14	y	0.21	4	15	4	15	y	0.00	0	13	0	13	n	0.23	9	31	9	31	y	0.09	3	32	3	32	y	0.11	1	8	1	8	n	0.24	9	28	9	28	y	0.11	2	16	2	16	y	0.00	0	19	0	19	n	0.11	3	25	3	25	y	0.14	3	19	3	19	y	0.24	9	28	9	28	y	ENSMUSG00000052751.17	Repin1	chr6	protein_coding	replication initiator 1
known_NIR_15813	chr6	48570986	48573227	+	48570986	48571796	A3SS&ES	ENSMUST00000204121.2	known	0.29	9	22	9	22	y	0.19	4	17	4	17	y	0.00	0	22	0	22	n	0.26	9	26	9	26	y	0.06	3	48	3	48	y	0.08	1	11	1	11	n	0.22	9	32	9	32	y	0.17	2	10	2	10	y	0.00	0	32	0	32	n	0.14	3	19	3	19	y	0.14	3	18	3	18	y	0.21	9	33	9	33	y	ENSMUSG00000107789.2	Gm44965	chr6	protein_coding	predicted gene 44965
known_NIR_15814	chr6	48570986	48573227	+	48571910	48573227	5pMXE	ENSMUST00000150030.2	known	0.33	9	18	9	18	y	0.14	4	25	4	25	y	0.00	0	21	0	21	n	0.21	9	34	9	34	y	0.06	3	47	3	47	y	0.08	1	11	1	11	n	0.28	9	23	9	23	y	0.07	2	25	2	25	y	0.00	0	28	0	28	n	0.09	3	29	3	29	y	0.10	3	26	3	26	y	0.23	9	30	9	30	y	ENSMUSG00000052751.17	Repin1	chr6	protein_coding	replication initiator 1
known_NIR_15815	chr6	48570986;48571910	48571725;48573227	+	48570986	48573227	cassetteExon	ENSMUST00000154010.8	known	0.64	16.0	9	14;18	9	y	0.83	20.0	4	15;25	4	y	1.00	17.0	0	13;21	0	n	0.78	32.5	9	31;34	9	y	0.93	39.5	3	32;47	3	y	0.90	9.5	1	8;11	1	n	0.74	25.5	9	28;23	9	y	0.91	20.5	2	16;25	2	y	1.00	23.5	0	19;28	0	n	0.90	27.0	3	25;29	3	y	0.88	22.5	3	19;26	3	y	0.76	29.0	9	28;30	9	y	ENSMUSG00000052751.17	Repin1	chr6	protein_coding	replication initiator 1
known_NIR_15816	chr6	48570986;48571910	48571796;48573227	+	48570986	48573227	cassetteExon	ENSMUST00000154010.8	known	0.69	20.0	9	22;18	9	y	0.84	21.0	4	17;25	4	y	1.00	21.5	0	22;21	0	n	0.77	30.0	9	26;34	9	y	0.94	47.5	3	48;47	3	y	0.92	11.0	1	11;11	1	n	0.75	27.5	9	32;23	9	y	0.90	17.5	2	10;25	2	y	1.00	30.0	0	32;28	0	n	0.89	24.0	3	19;29	3	y	0.88	22.0	3	18;26	3	y	0.78	31.5	9	33;30	9	y	ENSMUSG00000052751.17	Repin1	chr6	protein_coding	replication initiator 1
known_NIR_15817	chr6	48571910	48590112	+	48571910	48573227	3pMXE	ENSMUST00000009420.15	known	0.00	0	18	0	18	n	0.00	0	25	0	25	n	0.05	1	21	1	21	n	0.00	0	34	0	34	n	0.06	3	47	3	47	y	0.00	0	11	0	11	n	0.08	2	23	2	23	y	0.00	0	25	0	25	n	0.07	2	28	2	28	y	0.00	0	29	0	29	n	0.00	0	26	0	26	n	0.06	2	30	2	30	y	ENSMUSG00000052751.17	Repin1	chr6	protein_coding	replication initiator 1
known_NIR_15818	chr6	48718351	48719433	+	48718351	48727388	A3SS	ENSMUST00000127537.6	known	1.00	4	0	4	0	n	1.00	1	0	1	0	n	0.83	5	1	5	1	n	1.00	2	0	2	0	n	1.00	7	0	7	0	n	1.00	5	0	5	0	n	0.77	10	3	10	3	y	1.00	2	0	2	0	n	1.00	6	0	6	0	n	0.50	1	1	1	1	n	0.75	3	1	3	1	n	1.00	4	0	4	0	n	ENSMUSG00000098715.7	Gm28053	chr6	protein_coding	predicted gene, 28053
known_NIR_15819	chr6	48813271	48817295	-	48813271;48815299	48815106;48817295	ES	ENSMUST00000164733.4	known	0.00	2	894.0	2	1373;415	y	0.00	1	1060.5	1	1618;503	n	0.00	2	1479.0	2	2217;741	y	0.00	1	881.5	1	1367;396	n	0.00	0	1759.5	0	2766;753	n	0.00	3	1043.0	3	1570;516	y	0.00	1	1209.5	1	1886;533	n	0.00	0	1300.5	0	1979;622	n	0.00	0	727.0	0	1133;321	n	0.00	2	1003.0	2	1562;444	y	0.01	5	666.5	5	1087;246	y	0.00	0	876.0	0	1410;342	n	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15820	chr6	48813271;48815296	48815106;48817295	-	48813271	48817295	cassetteExon	ENSMUST00000204783.3	known	1.00	787.5	2	1373;202	2	y	1.00	951.5	1	1618;285	1	n	1.00	1329.5	2	2217;442	2	y	1.00	798.5	1	1367;230	1	n	1.00	1616.0	0	2766;466	0	n	1.00	955.0	3	1570;340	3	y	1.00	1111.5	1	1886;337	1	n	1.00	1178.5	0	1979;378	0	n	1.00	673.0	0	1133;213	0	n	1.00	900.5	2	1562;239	2	y	0.99	617.5	5	1087;148	5	y	1.00	807.0	0	1410;204	0	n	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15821	chr6	48813271;48817387	48817295;48817634	-	48813271;48815296	48815106;48817634	MXE	ENSMUST00000205159.3	known	0.01	9.5	686.5	2;17	1373;0	n	0.01	7.5	813.5	1;14	1618;9	n	0.00	5.0	1115.5	2;8	2217;14	y	0.01	4.0	685.5	1;7	1367;4	n	0.01	15.0	1386.0	0;30	2766;6	n	0.01	8.5	787.5	3;14	1570;5	y	0.00	4.5	949.5	1;8	1886;13	n	0.01	9.0	991.5	0;18	1979;4	n	0.00	2.5	570.0	0;5	1133;7	n	0.01	6.5	784.0	2;11	1562;6	y	0.01	6.5	543.5	5;8	1087;0	n	0.00	3.0	707.0	0;6	1410;4	n	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15822	chr6	48813271;48817387	48817295;48817930	-	48813271;48815296	48815106;48817930	MXE	ENSMUST00000204073.3	known	0.14	124.5	758.0	2;247	1373;143	y	0.14	141.0	884.0	1;281	1618;150	n	0.17	252.5	1208.5	2;503	2217;200	y	0.14	125.5	771.5	1;250	1367;176	n	0.13	232.5	1502.5	0;465	2766;239	n	0.15	154.0	841.5	3;305	1570;113	y	0.16	199.5	1054.5	1;398	1886;223	n	0.15	195.5	1073.5	0;391	1979;168	n	0.14	106.0	630.0	0;212	1133;127	n	0.15	150.5	869.5	2;299	1562;177	y	0.14	96.0	604.0	5;187	1087;121	y	0.14	126.0	790.5	0;252	1410;171	n	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15823	chr6	48813271;48817387	48817295;48817930	-	48813271;48815299	48815106;48817930	MXE	ENSMUST00000166247.8	known	0.13	124.5	814.0	2;247	1373;255	y	0.13	141.0	932.0	1;281	1618;246	n	0.16	252.5	1322.0	2;503	2217;427	y	0.13	125.5	853.5	1;250	1367;340	n	0.13	232.5	1615.5	0;465	2766;465	n	0.15	154.0	896.0	3;305	1570;222	y	0.15	199.5	1163.5	1;398	1886;441	n	0.14	195.5	1154.0	0;391	1979;329	n	0.13	106.0	714.5	0;212	1133;296	n	0.14	150.5	957.0	2;299	1562;352	y	0.13	96.0	667.5	5;187	1087;248	y	0.13	126.0	862.0	0;252	1410;314	n	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15824	chr6	48813271;48817387	48817295;48818282	-	48813271;48815299	48815106;48818282	MXE	ENSMUST00000205147.3	known	0.00	1.0	690.5	2;0	1373;8	n	0.00	3.5	813.0	1;6	1618;8	n	0.00	3.5	1116.5	2;5	2217;16	y	0.00	0.5	688.0	1;0	1367;9	n	0.00	2.0	1391.5	0;4	2766;17	n	0.00	3.0	789.5	3;3	1570;9	y	0.00	0.5	949.0	1;0	1886;12	n	0.00	0.0	993.0	0;0	1979;7	n	0.00	0.0	571.5	0;0	1133;10	n	0.00	2.5	787.5	2;3	1562;13	y	0.01	3.5	547.0	5;2	1087;7	y	0.00	0.5	710.5	0;1	1410;11	n	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15825	chr6	48815296	48817295	-	48815296;48816379	48816272;48817295	ES	ENSMUST00000203355.3	known	0.96	202	7.5	202	6;9	y	0.97	285	9.0	285	6;12	y	0.97	442	13.0	442	6;20	y	0.97	230	7.0	230	7;7	y	0.97	466	15.5	466	8;23	y	0.96	340	12.5	340	7;18	y	0.97	337	11.5	337	9;14	y	0.98	378	8.0	378	4;12	y	0.99	213	2.5	213	3;2	y	0.99	239	3.0	239	0;6	n	0.97	148	4.0	148	4;4	y	0.97	204	6.5	204	5;8	y	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15826	chr6	48815296	48817295	-	48815299	48817295	A3SS	ENSMUST00000164733.4	known	0.33	202	415	202	415	y	0.36	285	503	285	503	y	0.37	442	741	442	741	y	0.37	230	396	230	396	y	0.38	466	753	466	753	y	0.40	340	516	340	516	y	0.39	337	533	337	533	y	0.38	378	622	378	622	y	0.40	213	321	213	321	y	0.35	239	444	239	444	y	0.38	148	246	148	246	y	0.37	204	342	204	342	y	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15827	chr6	48815296	48817295	-	48816379	48817295	A3SS&ES	ENSMUST00000203501.2	known	0.96	202	9	202	9	y	0.96	285	12	285	12	y	0.96	442	20	442	20	y	0.97	230	7	230	7	y	0.95	466	23	466	23	y	0.95	340	18	340	18	y	0.96	337	14	337	14	y	0.97	378	12	378	12	y	0.99	213	2	213	2	y	0.98	239	6	239	6	y	0.97	148	4	148	4	y	0.96	204	8	204	8	y	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15828	chr6	48815296	48817634	-	48815296	48816272	A5SS&ES	ENSMUST00000203355.3	known	0.00	0	6	0	6	n	0.60	9	6	9	6	y	0.70	14	6	14	6	y	0.36	4	7	4	7	y	0.43	6	8	6	8	y	0.42	5	7	5	7	y	0.59	13	9	13	9	y	0.50	4	4	4	4	n	0.70	7	3	7	3	y	1.00	6	0	6	0	n	0.00	0	4	0	4	n	0.44	4	5	4	5	n	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15829	chr6	48815296	48817634	-	48815296	48817295	A5SS&ES	ENSMUST00000203229.3	known	0.00	0	202	0	202	n	0.03	9	285	9	285	y	0.03	14	442	14	442	y	0.02	4	230	4	230	y	0.01	6	466	6	466	y	0.01	5	340	5	340	y	0.04	13	337	13	337	y	0.01	4	378	4	378	y	0.03	7	213	7	213	y	0.02	6	239	6	239	y	0.00	0	148	0	148	n	0.02	4	204	4	204	y	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15830	chr6	48815296	48817634	-	48815296	48817930	A5SS	ENSMUST00000204073.3	known	0.00	0	143	0	143	n	0.06	9	150	9	150	y	0.07	14	200	14	200	y	0.02	4	176	4	176	y	0.02	6	239	6	239	y	0.04	5	113	5	113	y	0.06	13	223	13	223	y	0.02	4	168	4	168	y	0.05	7	127	7	127	y	0.03	6	177	6	177	y	0.00	0	121	0	121	n	0.02	4	171	4	171	y	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15831	chr6	48815296	48817634	-	48817387	48817634	A3SS&ES	ENSMUST00000203265.3	known	0.00	0	17	0	17	n	0.39	9	14	9	14	y	0.64	14	8	14	8	y	0.36	4	7	4	7	y	0.17	6	30	6	30	y	0.26	5	14	5	14	y	0.62	13	8	13	8	y	0.18	4	18	4	18	y	0.58	7	5	7	5	y	0.35	6	11	6	11	y	0.00	0	8	0	8	n	0.40	4	6	4	6	y	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15832	chr6	48815296	48817930	-	48815296	48816272	A5SS&ES	ENSMUST00000203355.3	known	0.96	143	6	143	6	y	0.96	150	6	150	6	y	0.97	200	6	200	6	y	0.96	176	7	176	7	y	0.97	239	8	239	8	y	0.94	113	7	113	7	y	0.96	223	9	223	9	y	0.98	168	4	168	4	y	0.98	127	3	127	3	y	1.00	177	0	177	0	n	0.97	121	4	121	4	y	0.97	171	5	171	5	y	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15833	chr6	48815296	48817930	-	48815296	48817295	5pMXE	ENSMUST00000203618.2	known	0.41	143	202	143	202	y	0.34	150	285	150	285	y	0.31	200	442	200	442	y	0.43	176	230	176	230	y	0.34	239	466	239	466	y	0.25	113	340	113	340	y	0.40	223	337	223	337	y	0.31	168	378	168	378	y	0.37	127	213	127	213	y	0.43	177	239	177	239	y	0.45	121	148	121	148	y	0.46	171	204	171	204	y	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15834	chr6	48815296	48817930	-	48815299	48817930	A3SS	ENSMUST00000166247.8	known	0.36	143	255	143	255	y	0.38	150	246	150	246	y	0.32	200	427	200	427	y	0.34	176	340	176	340	y	0.34	239	465	239	465	y	0.34	113	222	113	222	y	0.34	223	441	223	441	y	0.34	168	329	168	329	y	0.30	127	296	127	296	y	0.33	177	352	177	352	y	0.33	121	248	121	248	y	0.35	171	314	171	314	y	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15835	chr6	48815296	48817930	-	48817387	48817930	A3SS&ES	ENSMUST00000101429.11	known	0.37	143	247	143	247	y	0.35	150	281	150	281	y	0.28	200	503	200	503	y	0.41	176	250	176	250	y	0.34	239	465	239	465	y	0.27	113	305	113	305	y	0.36	223	398	223	398	y	0.30	168	391	168	391	y	0.37	127	212	127	212	y	0.37	177	299	177	299	y	0.39	121	187	121	187	y	0.40	171	252	171	252	y	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15836	chr6	48815296;48817387	48817295;48817634	-	48815296	48817634	cassetteExon	ENSMUST00000205159.3	known	1.00	109.5	0	202;17	0	n	0.94	149.5	9	285;14	9	y	0.94	225.0	14	442;8	14	y	0.97	118.5	4	230;7	4	y	0.98	248.0	6	466;30	6	y	0.97	177.0	5	340;14	5	y	0.93	172.5	13	337;8	13	y	0.98	198.0	4	378;18	4	y	0.94	109.0	7	213;5	7	y	0.95	125.0	6	239;11	6	y	1.00	78.0	0	148;8	0	n	0.96	105.0	4	204;6	4	y	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15837	chr6	48815296;48817387	48817295;48817930	-	48815296	48817930	cassetteExon	ENSMUST00000204073.3	known	0.61	224.5	143	202;247	143	y	0.65	283.0	150	285;281	150	y	0.70	472.5	200	442;503	200	y	0.58	240.0	176	230;250	176	y	0.66	465.5	239	466;465	239	y	0.74	322.5	113	340;305	113	y	0.62	367.5	223	337;398	223	y	0.70	384.5	168	378;391	168	y	0.63	212.5	127	213;212	127	y	0.60	269.0	177	239;299	177	y	0.58	167.5	121	148;187	121	y	0.57	228.0	171	204;252	171	y	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15838	chr6	48815299	48816272	-	48815296	48816272	A3SS	ENSMUST00000203355.3	known	0.60	9	6	9	6	y	0.79	23	6	23	6	y	0.83	30	6	30	6	y	0.67	14	7	14	7	y	0.75	24	8	24	8	y	0.77	23	7	23	7	y	0.61	14	9	14	9	y	0.76	13	4	13	4	y	0.67	6	3	6	3	n	1.00	12	0	12	0	n	0.60	6	4	6	4	y	0.55	6	5	6	5	y	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15839	chr6	48815299	48816272	-	48815299	48817930	A5SS	ENSMUST00000166247.8	known	0.03	9	255	9	255	y	0.09	23	246	23	246	y	0.07	30	427	30	427	y	0.04	14	340	14	340	y	0.05	24	465	24	465	y	0.09	23	222	23	222	y	0.03	14	441	14	441	y	0.04	13	329	13	329	y	0.02	6	296	6	296	y	0.03	12	352	12	352	y	0.02	6	248	6	248	y	0.02	6	314	6	314	y	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15840	chr6	48815299	48816272	-	48815299	48818282	A5SS	ENSMUST00000205147.3	known	0.53	9	8	9	8	y	0.74	23	8	23	8	y	0.65	30	16	30	16	y	0.61	14	9	14	9	y	0.59	24	17	24	17	y	0.72	23	9	23	9	y	0.54	14	12	14	12	y	0.65	13	7	13	7	y	0.38	6	10	6	10	y	0.48	12	13	12	13	y	0.46	6	7	6	7	y	0.35	6	11	6	11	y	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15841	chr6	48815299	48817295	-	48816379	48817295	A3SS&ES	ENSMUST00000203355.3	known	0.98	415	9	415	9	y	0.98	503	12	503	12	y	0.97	741	20	741	20	y	0.98	396	7	396	7	y	0.97	753	23	753	23	y	0.97	516	18	516	18	y	0.97	533	14	533	14	y	0.98	622	12	622	12	y	0.99	321	2	321	2	y	0.99	444	6	444	6	y	0.98	246	4	246	4	y	0.98	342	8	342	8	y	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15842	chr6	48815299	48817930	-	48815299	48817295	5pMXE	ENSMUST00000164733.4	known	0.38	255	415	255	415	y	0.33	246	503	246	503	y	0.37	427	741	427	741	y	0.46	340	396	340	396	y	0.38	465	753	465	753	y	0.30	222	516	222	516	y	0.45	441	533	441	533	y	0.35	329	622	329	622	y	0.48	296	321	296	321	y	0.44	352	444	352	444	y	0.50	248	246	248	246	y	0.48	314	342	314	342	y	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15843	chr6	48815299	48817930	-	48817387	48817930	A3SS&ES	ENSMUST00000203229.3	known	0.51	255	247	255	247	y	0.47	246	281	246	281	y	0.46	427	503	427	503	y	0.58	340	250	340	250	y	0.50	465	465	465	465	y	0.42	222	305	222	305	y	0.53	441	398	441	398	y	0.46	329	391	329	391	y	0.58	296	212	296	212	y	0.54	352	299	352	299	y	0.57	248	187	248	187	y	0.55	314	252	314	252	y	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15844	chr6	48815299	48818282	-	48815299	48817295	5pMXE	ENSMUST00000164733.4	known	0.02	8	415	8	415	y	0.02	8	503	8	503	y	0.02	16	741	16	741	y	0.02	9	396	9	396	y	0.02	17	753	17	753	y	0.02	9	516	9	516	y	0.02	12	533	12	533	y	0.01	7	622	7	622	y	0.03	10	321	10	321	y	0.03	13	444	13	444	y	0.03	7	246	7	246	y	0.03	11	342	11	342	y	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15845	chr6	48815299	48818282	-	48815299	48817930	A5SS	ENSMUST00000166247.8	known	0.03	8	255	8	255	y	0.03	8	246	8	246	y	0.04	16	427	16	427	y	0.03	9	340	9	340	y	0.04	17	465	17	465	y	0.04	9	222	9	222	y	0.03	12	441	12	441	y	0.02	7	329	7	329	y	0.03	10	296	10	296	y	0.04	13	352	13	352	y	0.03	7	248	7	248	y	0.03	11	314	11	314	y	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15846	chr6	48815299	48818282	-	48817387	48818282	A3SS&ES	ENSMUST00000203355.3	known	1.00	8	0	8	0	n	0.57	8	6	8	6	y	0.76	16	5	16	5	y	1.00	9	0	9	0	n	0.81	17	4	17	4	y	0.75	9	3	9	3	y	1.00	12	0	12	0	n	1.00	7	0	7	0	n	1.00	10	0	10	0	n	0.81	13	3	13	3	y	0.78	7	2	7	2	n	0.92	11	1	11	1	n	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15847	chr6	48815299;48816379	48816272;48817295	-	48815299	48817295	cassetteExon	ENSMUST00000164733.4	known	0.02	9.0	415	9;9	415	y	0.03	17.5	503	23;12	503	y	0.03	25.0	741	30;20	741	y	0.03	10.5	396	14;7	396	y	0.03	23.5	753	24;23	753	y	0.04	20.5	516	23;18	516	y	0.03	14.0	533	14;14	533	y	0.02	12.5	622	13;12	622	y	0.01	4.0	321	6;2	321	y	0.02	9.0	444	12;6	444	y	0.02	5.0	246	6;4	246	y	0.02	7.0	342	6;8	342	y	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15848	chr6	48815299;48817387	48817295;48817930	-	48815299	48817930	cassetteExon	ENSMUST00000166247.8	known	0.56	331.0	255	415;247	255	y	0.61	392.0	246	503;281	246	y	0.59	622.0	427	741;503	427	y	0.49	323.0	340	396;250	340	y	0.57	609.0	465	753;465	465	y	0.65	410.5	222	516;305	222	y	0.51	465.5	441	533;398	441	y	0.61	506.5	329	622;391	329	y	0.47	266.5	296	321;212	296	y	0.51	371.5	352	444;299	352	y	0.47	216.5	248	246;187	248	y	0.49	297.0	314	342;252	314	y	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15849	chr6	48815299;48817387	48817295;48818282	-	48815299	48818282	cassetteExon	ENSMUST00000205147.3	known	0.96	207.5	8	415;0	8	n	0.97	254.5	8	503;6	8	y	0.96	373.0	16	741;5	16	y	0.96	198.0	9	396;0	9	n	0.96	378.5	17	753;4	17	y	0.97	259.5	9	516;3	9	y	0.96	266.5	12	533;0	12	n	0.98	311.0	7	622;0	7	n	0.94	160.5	10	321;0	10	n	0.95	223.5	13	444;3	13	y	0.95	124.0	7	246;2	7	y	0.94	171.5	11	342;1	11	n	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15850	chr6	48816379	48817295	-	48813271	48817295	A3SS	ENSMUST00000204783.3	known	0.82	9	2	9	2	y	0.92	12	1	12	1	n	0.91	20	2	20	2	y	0.88	7	1	7	1	n	1.00	23	0	23	0	n	0.86	18	3	18	3	y	0.93	14	1	14	1	n	1.00	12	0	12	0	n	1.00	2	0	2	0	n	0.75	6	2	6	2	n	0.44	4	5	4	5	n	1.00	8	0	8	0	n	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15851	chr6	48817387	48817634	-	48817387	48817930	A5SS	ENSMUST00000101429.11	known	0.06	17	247	17	247	y	0.05	14	281	14	281	y	0.02	8	503	8	503	y	0.03	7	250	7	250	y	0.06	30	465	30	465	y	0.04	14	305	14	305	y	0.02	8	398	8	398	y	0.04	18	391	18	391	y	0.02	5	212	5	212	y	0.04	11	299	11	299	y	0.04	8	187	8	187	y	0.02	6	252	6	252	y	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15852	chr6	48817387	48817634	-	48817387	48818282	A5SS	ENSMUST00000203355.3	known	1.00	17	0	17	0	n	0.70	14	6	14	6	y	0.62	8	5	8	5	y	1.00	7	0	7	0	n	0.88	30	4	30	4	y	0.82	14	3	14	3	y	1.00	8	0	8	0	n	1.00	18	0	18	0	n	1.00	5	0	5	0	n	0.79	11	3	11	3	y	0.80	8	2	8	2	y	0.86	6	1	6	1	n	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15853	chr6	48817387	48818282	-	48817387	48817930	5pMXE	ENSMUST00000101429.11	known	0.00	0	247	0	247	n	0.02	6	281	6	281	y	0.01	5	503	5	503	y	0.00	0	250	0	250	n	0.01	4	465	4	465	y	0.01	3	305	3	305	y	0.00	0	398	0	398	n	0.00	0	391	0	391	n	0.00	0	212	0	212	n	0.01	3	299	3	299	y	0.01	2	187	2	187	y	0.00	1	252	1	252	n	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15854	chr6	48818644	48819138	+	48818523	48819138	A5SS	ENSMUST00000204400.2	known	0.02	16	969	16	969	y	0.04	38	1030	38	1030	y	0.01	21	1399	21	1399	y	0.01	9	1141	9	1141	y	0.02	42	1882	42	1882	y	0.01	14	1041	14	1041	y	0.02	20	1284	20	1284	y	0.04	57	1421	57	1421	y	0.01	11	830	11	830	y	0.01	15	1077	15	1077	y	0.02	15	681	15	681	y	0.02	15	856	15	856	y	ENSMUSG00000023367.15	Tmem176a	chr6	protein_coding	transmembrane protein 176A
known_NIR_15855	chr6	48818753	48819138	+	48818523	48819138	A5SS	ENSMUST00000204400.2	known	0.00	1	969	1	969	n	0.00	0	1030	0	1030	n	0.00	3	1399	3	1399	y	0.00	0	1141	0	1141	n	0.00	0	1882	0	1882	n	0.00	3	1041	3	1041	y	0.00	0	1284	0	1284	n	0.00	0	1421	0	1421	n	0.00	0	830	0	830	n	0.00	0	1077	0	1077	n	0.00	0	681	0	681	n	0.00	1	856	1	856	n	ENSMUSG00000023367.15	Tmem176a	chr6	protein_coding	transmembrane protein 176A
known_NIR_15856	chr6	48818753	48819138	+	48818644	48819138	A5SS	ENSMUST00000168406.4	known	0.06	1	16	1	16	n	0.00	0	38	0	38	n	0.12	3	21	3	21	y	0.00	0	9	0	9	n	0.00	0	42	0	42	n	0.18	3	14	3	14	y	0.00	0	20	0	20	n	0.00	0	57	0	57	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	15	0	15	n	0.06	1	15	1	15	n	ENSMUSG00000023367.15	Tmem176a	chr6	protein_coding	transmembrane protein 176A
known_NIR_15857	chr6	49051037	49059779	+	49051037;49052198	49052020;49059779	ES	ENSMUST00000128616.6	known	0.03	3	106.5	3	94;119	y	0.05	6	104.5	6	93;116	y	0.02	3	117.5	3	108;127	y	0.06	7	113.5	7	87;140	y	0.05	8	153.5	8	148;159	y	0.05	4	76.0	4	62;90	y	0.04	7	167.5	7	135;200	y	0.08	6	69.5	6	61;78	y	0.07	7	99.0	7	79;119	y	0.03	5	160.0	5	143;177	y	0.05	8	142.0	8	122;162	y	0.05	7	140.5	7	115;166	y	ENSMUSG00000029815.13	Malsu1	chr6	protein_coding	mitochondrial assembly of ribosomal large subunit 1
known_NIR_15858	chr6	49052198	49056974	+	49052198	49059779	A3SS	ENSMUST00000128616.6	known	0.00	0	119	0	119	n	0.02	2	116	2	116	y	0.02	2	127	2	127	y	0.01	1	140	1	140	n	0.03	5	159	5	159	y	0.03	3	90	3	90	y	0.01	3	200	3	200	y	0.00	0	78	0	78	n	0.02	3	119	3	119	y	0.00	0	177	0	177	n	0.00	0	162	0	162	n	0.01	1	166	1	166	n	ENSMUSG00000029815.13	Malsu1	chr6	protein_coding	mitochondrial assembly of ribosomal large subunit 1
known_NIR_15859	chr6	49221869	49222410	-	49221869	49222416	A5SS	ENSMUST00000204189.3	known	0.81	48	11	48	11	y	0.76	44	14	44	14	y	0.81	29	7	29	7	y	0.93	40	3	40	3	y	0.91	41	4	41	4	y	0.79	23	6	23	6	y	0.81	47	11	47	11	y	0.83	34	7	34	7	y	0.74	32	11	32	11	y	0.84	51	10	51	10	y	0.86	37	6	37	6	y	0.85	29	5	29	5	y	ENSMUSG00000029817.12	Tra2a	chr6	protein_coding	transformer 2 alpha
known_NIR_15860	chr6	50087434	50120699	+	50087444	50120699	A5SS	ENSMUST00000166318.8	known	0.17	7	34	7	34	y	0.11	6	48	6	48	y	0.02	2	81	2	81	y	0.13	8	54	8	54	y	0.06	6	90	6	90	y	0.07	5	69	5	69	y	0.12	7	52	7	52	y	0.07	2	28	2	28	y	0.18	7	31	7	31	y	0.09	7	74	7	74	y	0.02	1	60	1	60	n	0.07	5	65	5	65	y	ENSMUSG00000038388.15	Mpp6	chr6	protein_coding	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)
known_NIR_15861	chr6	50087444	50122754	+	50087444;50120764	50120699;50122754	ES	ENSMUST00000166318.8	known	0.07	4	56.5	4	34;79	y	0.02	1	64.0	1	48;80	n	0.06	7	115.0	7	81;149	y	0.04	3	71.0	3	54;88	y	0.05	6	121.0	6	90;152	y	0.00	0	78.0	0	69;87	n	0.03	3	88.5	3	52;125	y	0.04	2	43.0	2	28;58	y	0.06	3	47.5	3	31;64	y	0.00	0	105.5	0	74;137	n	0.05	4	77.0	4	60;94	y	0.03	3	102.5	3	65;140	y	ENSMUSG00000038388.15	Mpp6	chr6	protein_coding	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)
known_NIR_15862	chr6	50087444	50122754	+	50120764	50122754	A5SS&ES	ENSMUST00000036225.15	known	0.05	4	79	4	79	y	0.01	1	80	1	80	n	0.04	7	149	7	149	y	0.03	3	88	3	88	y	0.04	6	152	6	152	y	0.00	0	87	0	87	n	0.02	3	125	3	125	y	0.03	2	58	2	58	y	0.04	3	64	3	64	y	0.00	0	137	0	137	n	0.04	4	94	4	94	y	0.02	3	140	3	140	y	ENSMUSG00000038388.15	Mpp6	chr6	protein_coding	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)
known_NIR_15863	chr6	50088107	50120699	+	50087434	50120699	A5SS	ENSMUST00000036225.15	known	0.30	3	7	3	7	y	0.33	3	6	3	6	n	0.87	13	2	13	2	y	0.20	2	8	2	8	y	0.73	16	6	16	6	y	0.50	5	5	5	5	y	0.68	15	7	15	7	y	0.33	1	2	1	2	n	0.36	4	7	4	7	y	0.53	8	7	8	7	y	0.88	7	1	7	1	n	0.67	10	5	10	5	y	ENSMUSG00000038388.15	Mpp6	chr6	protein_coding	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)
known_NIR_15864	chr6	50088107	50120699	+	50087444	50120699	A5SS	ENSMUST00000166318.8	known	0.08	3	34	3	34	y	0.06	3	48	3	48	y	0.14	13	81	13	81	y	0.04	2	54	2	54	y	0.15	16	90	16	90	y	0.07	5	69	5	69	y	0.22	15	52	15	52	y	0.03	1	28	1	28	n	0.11	4	31	4	31	y	0.10	8	74	8	74	y	0.10	7	60	7	60	y	0.13	10	65	10	65	y	ENSMUSG00000038388.15	Mpp6	chr6	protein_coding	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)
known_NIR_15865	chr6	50140629	50155369	+	50140629;50153898	50153857;50155369	ES	ENSMUST00000166318.8	known	0.94	124	8.0	124	9;7	y	0.93	119	9.5	119	9;10	y	0.97	216	7.5	216	7;8	y	0.93	145	11.0	145	10;12	y	0.91	186	17.5	186	18;17	y	0.99	141	1.5	141	1;2	n	0.88	168	23.5	168	26;21	y	0.96	146	6.5	146	6;7	y	0.94	133	8.0	133	11;5	y	0.92	188	17.0	188	14;20	y	0.94	144	10.0	144	9;11	y	0.92	149	12.5	149	14;11	y	ENSMUSG00000038388.15	Mpp6	chr6	protein_coding	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)
known_NIR_15866	chr6	50544002;50552512	50552446;50566889	+	50544002	50566889	cassetteExon	ENSMUST00000147260.8	known	0.00	0.0	2	0;0	2	n	0.00	0.0	2	0;0	2	n	1.00	0.5	0	0;1	0	n	0.33	0.5	1	0;1	1	n	0.00	0.0	6	0;0	6	n	-	-	-	-	-	-	0.50	4.0	4	2;6	4	y	1.00	0.5	0	0;1	0	n	1.00	2.5	0	2;3	0	n	0.50	1.0	1	1;1	1	n	0.43	1.5	2	0;3	2	n	1.00	2.5	0	3;2	0	n	ENSMUSG00000085776.9	5430402O13Rik	chr6	lncRNA	RIKEN cDNA 5430402O13 gene
known_NIR_15867	chr6	51438413	51440391	-	51438413	51438900	5pMXE	ENSMUST00000204885.2	known	0.71	295	120	295	120	y	0.71	334	137	334	137	y	0.87	545	78	545	78	y	0.75	278	95	278	95	y	0.78	403	111	403	111	y	0.90	418	45	418	45	y	0.70	372	162	372	162	y	0.84	327	61	327	61	y	0.64	198	113	198	113	y	0.66	357	181	357	181	y	0.69	255	112	255	112	y	0.68	315	149	315	149	y	ENSMUSG00000004980.17	Hnrnpa2b1	chr6	protein_coding	heterogeneous nuclear ribonucleoprotein A2/B1
known_NIR_15868	chr6	51438413;51439035	51438900;51440391	-	51438413	51440391	cassetteExon	ENSMUST00000069949.13	known	0.34	154.5	295	120;189	295	y	0.32	160.0	334	137;183	334	y	0.17	110.0	545	78;142	545	y	0.31	123.5	278	95;152	278	y	0.28	160.5	403	111;210	403	y	0.14	68.5	418	45;92	418	y	0.37	216.5	372	162;271	372	y	0.19	77.5	327	61;94	327	y	0.40	134.5	198	113;156	198	y	0.38	220.0	357	181;259	357	y	0.38	153.0	255	112;194	255	y	0.37	186.0	315	149;223	315	y	ENSMUSG00000004980.17	Hnrnpa2b1	chr6	protein_coding	heterogeneous nuclear ribonucleoprotein A2/B1
known_NIR_15869	chr6	51440234	51440391	-	51438413	51440391	A3SS	ENSMUST00000069949.13	known	0.67	610	295	610	295	y	0.66	640	334	640	334	y	0.43	409	545	409	545	y	0.67	567	278	567	278	y	0.57	525	403	525	403	y	0.33	209	418	209	418	y	0.67	741	372	741	372	y	0.49	316	327	316	327	y	0.73	531	198	531	198	y	0.71	873	357	873	357	y	0.71	633	255	633	255	y	0.70	730	315	730	315	y	ENSMUSG00000004980.17	Hnrnpa2b1	chr6	protein_coding	heterogeneous nuclear ribonucleoprotein A2/B1
known_NIR_15870	chr6	51440234	51440391	-	51439035	51440391	A3SS	ENSMUST00000203954.3	known	0.76	610	189	610	189	y	0.78	640	183	640	183	y	0.74	409	142	409	142	y	0.79	567	152	567	152	y	0.71	525	210	525	210	y	0.69	209	92	209	92	y	0.73	741	271	741	271	y	0.77	316	94	316	94	y	0.77	531	156	531	156	y	0.77	873	259	873	259	y	0.77	633	194	633	194	y	0.77	730	223	730	223	y	ENSMUSG00000004980.17	Hnrnpa2b1	chr6	protein_coding	heterogeneous nuclear ribonucleoprotein A2/B1
known_NIR_15871	chr6	51441191	51442159	-	51441191	51441408	A5SS&ES	ENSMUST00000203253.2	known	0.26	196	545	196	545	y	0.27	207	552	207	552	y	0.43	384	507	384	507	y	0.25	212	643	212	643	y	0.30	322	745	322	745	y	0.45	275	331	275	331	y	0.25	243	714	243	714	y	0.36	205	360	205	360	y	0.23	147	479	147	479	y	0.26	262	742	262	742	y	0.29	214	535	214	535	y	0.29	269	671	269	671	y	ENSMUSG00000004980.17	Hnrnpa2b1	chr6	protein_coding	heterogeneous nuclear ribonucleoprotein A2/B1
known_NIR_15872	chr6	51441191;51441527	51441408;51442159	-	51441191	51442159	cassetteExon	ENSMUST00000069949.13	known	0.71	473.5	196	545;402	196	y	0.69	460.0	207	552;368	207	y	0.55	461.0	384	507;415	384	y	0.73	562.0	212	643;481	212	y	0.67	648.0	322	745;551	322	y	0.50	279.0	275	331;227	275	y	0.71	600.5	243	714;487	243	y	0.61	318.0	205	360;276	205	y	0.74	422.0	147	479;365	147	y	0.71	649.0	262	742;556	262	y	0.69	467.5	214	535;400	214	y	0.68	578.5	269	671;486	269	y	ENSMUSG00000004980.17	Hnrnpa2b1	chr6	protein_coding	heterogeneous nuclear ribonucleoprotein A2/B1
known_NIR_15873	chr6	51444275;51444406	51444371;51446651	-	51444275	51446651	cassetteExon	ENSMUST00000069949.13	known	0.16	144.0	767	159;129	767	y	0.16	97.0	500	100;94	500	y	0.10	112.0	970	113;111	970	y	0.17	178.0	850	186;170	850	y	0.12	142.5	998	142;143	998	y	0.10	61.0	520	67;55	520	y	0.12	118.5	866	128;109	866	y	0.13	88.5	607	97;80	607	y	0.13	100.0	652	109;91	652	y	0.15	168.5	955	167;170	955	y	0.12	87.5	653	84;91	653	y	0.11	107.0	899	112;102	899	y	ENSMUSG00000004980.17	Hnrnpa2b1	chr6	protein_coding	heterogeneous nuclear ribonucleoprotein A2/B1
known_NIR_15874	chr6	51447719	51448796	+	51447411	51448796	A5SS	ENSMUST00000094623.10	known	1.00	39	0	39	0	n	0.98	42	1	42	1	n	1.00	66	0	66	0	n	1.00	67	0	67	0	n	1.00	91	0	91	0	n	0.97	39	1	39	1	n	0.95	61	3	61	3	y	0.98	51	1	51	1	n	0.93	28	2	28	2	y	1.00	77	0	77	0	n	1.00	47	0	47	0	n	1.00	84	0	84	0	n	ENSMUSG00000029836.16	Cbx3	chr6	protein_coding	chromobox 3
known_NIR_15875	chr6	51452353	51458704	+	51452353	51455418	3pMXE	ENSMUST00000141711.3	known	0.00	0	112	0	112	n	0.01	1	133	1	133	n	0.00	0	146	0	146	n	0.00	0	142	0	142	n	0.00	0	179	0	179	n	0.00	0	90	0	90	n	0.00	0	166	0	166	n	0.00	0	125	0	125	n	0.00	0	120	0	120	n	0.01	2	161	2	161	y	0.00	0	120	0	120	n	0.00	0	209	0	209	n	ENSMUSG00000029836.16	Cbx3	chr6	protein_coding	chromobox 3
known_NIR_15876	chr6	51452353	51458704	+	51452353;51455580	51455418;51458704	ES	ENSMUST00000094623.10	known	0.00	0	132.0	0	112;152	n	0.01	1	131.0	1	133;129	n	0.00	0	146.5	0	146;147	n	0.00	0	135.5	0	142;129	n	0.00	0	185.0	0	179;191	n	0.00	0	81.5	0	90;73	n	0.00	0	158.0	0	166;150	n	0.00	0	121.5	0	125;118	n	0.00	0	119.5	0	120;119	n	0.01	2	150.5	2	161;140	y	0.00	0	115.5	0	120;111	n	0.00	0	181.5	0	209;154	n	ENSMUSG00000029836.16	Cbx3	chr6	protein_coding	chromobox 3
known_NIR_15877	chr6	51521629	51538998	+	51501014	51538998	A5SS	ENSMUST00000049152.15	known	0.91	52	5	52	5	y	0.96	54	2	54	2	y	0.92	213	19	213	19	y	1.00	93	0	93	0	n	0.94	135	8	135	8	y	0.96	86	4	86	4	y	0.95	125	7	125	7	y	0.93	75	6	75	6	y	0.96	52	2	52	2	y	0.98	79	2	79	2	y	0.98	48	1	48	1	n	0.98	60	1	60	1	n	ENSMUSG00000038301.16	Snx10	chr6	protein_coding	sorting nexin 10
known_NIR_15878	chr6	51521732	51538998	+	51501014	51538998	A5SS	ENSMUST00000049152.15	known	0.82	23	5	23	5	y	0.88	14	2	14	2	y	0.80	75	19	75	19	y	1.00	17	0	17	0	n	0.69	18	8	18	8	y	0.89	33	4	33	4	y	0.74	20	7	20	7	y	0.78	21	6	21	6	y	0.67	4	2	4	2	n	0.82	9	2	9	2	y	0.91	10	1	10	1	n	0.89	8	1	8	1	n	ENSMUSG00000038301.16	Snx10	chr6	protein_coding	sorting nexin 10
known_NIR_15879	chr6	51521732	51538998	+	51521629	51538998	A5SS	ENSMUST00000137212.8	known	0.31	23	52	23	52	y	0.21	14	54	14	54	y	0.26	75	213	75	213	y	0.15	17	93	17	93	y	0.12	18	135	18	135	y	0.28	33	86	33	86	y	0.14	20	125	20	125	y	0.22	21	75	21	75	y	0.07	4	52	4	52	y	0.10	9	79	9	79	y	0.17	10	48	10	48	y	0.12	8	60	8	60	y	ENSMUSG00000038301.16	Snx10	chr6	protein_coding	sorting nexin 10
known_NIR_15880	chr6	51552969	51557282	+	51552969;51556930	51556830;51557282	ES	ENSMUST00000049152.15	known	0.00	0	64.0	0	64;64	n	0.00	0	63.0	0	57;69	n	0.00	0	357.0	0	345;369	n	0.00	0	100.5	0	103;98	n	0.02	3	167.5	3	174;161	y	0.00	0	144.0	0	133;155	n	0.00	0	132.0	0	137;127	n	0.00	0	97.0	0	97;97	n	0.00	0	64.0	0	62;66	n	0.01	1	102.5	1	99;106	n	0.00	0	59.0	0	65;53	n	0.00	0	87.0	0	84;90	n	ENSMUSG00000038301.16	Snx10	chr6	protein_coding	sorting nexin 10
known_NIR_15881	chr6	5156240	5158089	+	5156240;5157027	5157004;5158089	ES	ENSMUST00000175889.8	known	0.67	2	1.0	2	1;1	n	0.00	0	4.0	0	4;4	n	0.57	2	1.5	2	1;2	n	0.67	6	3.0	6	4;2	y	0.73	8	3.0	8	2;4	y	1.00	2	0.0	2	0;0	n	0.00	0	4.5	0	5;4	n	0.67	1	0.5	1	0;1	n	0.00	0	3.0	0	4;2	n	0.80	2	0.5	2	1;0	n	1.00	3	0.0	3	0;0	n	1.00	3	0.0	3	0;0	n	ENSMUSG00000032827.16	Ppp1r9a	chr6	protein_coding	protein phosphatase 1, regulatory subunit 9A
known_NIR_15882	chr6	5171869	5181439	-	5171869;5175823	5175742;5181439	ES	ENSMUST00000177159.9	known	0.00	2	1466.5	2	2806;127	y	0.00	4	1386.5	4	2666;107	y	0.00	0	168.0	0	329;7	n	0.00	0	1486.5	0	2882;91	n	0.00	6	1572.0	6	3018;126	y	0.00	0	180.0	0	349;11	n	0.00	6	1689.5	6	3243;136	y	0.00	0	401.0	0	767;35	n	0.01	8	1518.5	8	2922;115	y	0.00	10	2187.5	10	4229;146	y	0.00	3	1656.0	3	3196;116	y	0.00	8	1708.5	8	3300;117	y	ENSMUSG00000002588.14	Pon1	chr6	protein_coding	paraoxonase 1
known_NIR_15883	chr6	5175823	5181439	-	5175823;5177410	5177210;5181439	ES	ENSMUST00000002663.12	known	0.06	127	2143.0	127	2188;2098	y	0.05	107	1990.5	107	2151;1830	y	0.02	7	283.5	7	293;274	y	0.04	91	2395.5	91	2512;2279	y	0.05	126	2512.0	126	2470;2554	y	0.04	11	268.5	11	287;250	y	0.05	136	2518.0	136	2671;2365	y	0.05	35	680.0	35	707;653	y	0.05	115	2301.5	115	2442;2161	y	0.04	146	3457.0	146	3615;3299	y	0.05	116	2453.0	116	2649;2257	y	0.04	117	2727.5	117	2743;2712	y	ENSMUSG00000002588.14	Pon1	chr6	protein_coding	paraoxonase 1
known_NIR_15884	chr6	5177410	5181439	-	5171869	5181439	A3SS	ENSMUST00000176945.2	known	1.00	2098	2	2098	2	y	1.00	1830	4	1830	4	y	1.00	274	0	274	0	n	1.00	2279	0	2279	0	n	1.00	2554	6	2554	6	y	1.00	250	0	250	0	n	1.00	2365	6	2365	6	y	1.00	653	0	653	0	n	1.00	2161	8	2161	8	y	1.00	3299	10	3299	10	y	1.00	2257	3	2257	3	y	1.00	2712	8	2712	8	y	ENSMUSG00000002588.14	Pon1	chr6	protein_coding	paraoxonase 1
known_NIR_15885	chr6	51837079	51848817	-	51837079	51851455	A5SS	ENSMUST00000204778.3	known	0.02	2	116	2	116	y	0.01	1	110	1	110	n	0.00	0	157	0	157	n	0.01	1	102	1	102	n	0.01	2	145	2	145	y	0.00	0	57	0	57	n	0.00	0	144	0	144	n	0.00	0	63	0	63	n	0.01	1	105	1	105	n	0.00	0	136	0	136	n	0.00	0	129	0	129	n	0.00	0	153	0	153	n	ENSMUSG00000059182.9	Skap2	chr6	protein_coding	src family associated phosphoprotein 2
known_NIR_15886	chr6	5240978	5246278	-	5240978	5246048	A5SS	ENSMUST00000129344.8	known	1.00	209	1	209	1	n	0.96	128	6	128	6	y	0.97	188	6	188	6	y	1.00	219	0	219	0	n	0.98	321	8	321	8	y	0.96	134	6	134	6	y	0.99	285	3	285	3	y	0.98	185	3	185	3	y	1.00	163	0	163	0	n	0.98	279	5	279	5	y	0.98	189	3	189	3	y	0.98	195	3	195	3	y	ENSMUSG00000029759.10	Pon3	chr6	protein_coding	paraoxonase 3
known_NIR_15887	chr6	5246333	5256153	-	5246333	5254516	5pMXE	ENSMUST00000176948.3	known	0.00	0	151	0	151	n	0.07	9	114	9	114	y	0.01	2	153	2	153	y	0.00	0	205	0	205	n	0.00	0	261	0	261	n	0.02	2	115	2	115	y	0.02	5	203	5	203	y	0.03	4	142	4	142	y	0.01	2	155	2	155	y	0.03	7	251	7	251	y	0.04	5	137	5	137	y	0.01	2	180	2	180	y	ENSMUSG00000029759.10	Pon3	chr6	protein_coding	paraoxonase 3
known_NIR_15888	chr6	5246333	5256153	-	5246333;5254586	5254516;5256153	ES	ENSMUST00000129344.8	known	0.00	0	141.0	0	151;131	n	0.08	9	105.0	9	114;96	y	0.01	2	143.0	2	153;133	y	0.00	0	204.5	0	205;204	n	0.00	0	252.0	0	261;243	n	0.02	2	113.0	2	115;111	y	0.03	5	192.0	5	203;181	y	0.03	4	149.5	4	142;157	y	0.01	2	137.0	2	155;119	y	0.03	7	227.5	7	251;204	y	0.04	5	129.5	5	137;122	y	0.01	2	172.0	2	180;164	y	ENSMUSG00000029759.10	Pon3	chr6	protein_coding	paraoxonase 3
known_NIR_15889	chr6	52524047	52533423	-	52524047;52525956	52525800;52533423	ES	ENSMUST00000031788.9	known	0.00	0	583.0	0	610;556	n	0.00	0	607.0	0	663;551	n	0.00	0	241.5	0	218;265	n	0.00	0	598.5	0	631;566	n	0.00	0	603.0	0	620;586	n	0.00	1	204.5	1	207;202	n	0.00	0	644.5	0	674;615	n	0.00	0	234.0	0	226;242	n	0.00	0	628.5	0	671;586	n	0.00	1	978.0	1	994;962	n	0.00	3	788.0	3	785;791	y	0.00	0	917.5	0	980;855	n	ENSMUSG00000029776.12	Hibadh	chr6	protein_coding	3-hydroxyisobutyrate dehydrogenase
known_NIR_15890	chr6	52524047	52533423	-	52525956	52533423	3pMXE	ENSMUST00000149471.2	known	0.00	0	556	0	556	n	0.00	0	551	0	551	n	0.00	0	265	0	265	n	0.00	0	566	0	566	n	0.00	0	586	0	586	n	0.00	1	202	1	202	n	0.00	0	615	0	615	n	0.00	0	242	0	242	n	0.00	0	586	0	586	n	0.00	1	962	1	962	n	0.00	3	791	3	791	y	0.00	0	855	0	855	n	ENSMUSG00000029776.12	Hibadh	chr6	protein_coding	3-hydroxyisobutyrate dehydrogenase
known_NIR_15891	chr6	52691614	52698283	+	52690840	52698283	A5SS	ENSMUST00000080723.11	known	0.04	5	123	5	123	y	0.00	0	70	0	70	n	0.00	0	227	0	227	n	0.03	5	179	5	179	y	0.01	3	243	3	243	y	0.02	2	113	2	113	y	0.04	7	187	7	187	y	0.01	1	125	1	125	n	0.01	1	110	1	110	n	0.01	2	187	2	187	y	0.02	2	87	2	87	y	0.03	5	156	5	156	y	ENSMUSG00000004535.13	Tax1bp1	chr6	protein_coding	Tax1 (human T cell leukemia virus type I) binding protein 1
known_NIR_15892	chr6	5277927;5278812	5278719;5289013	-	5277927	5289013	cassetteExon	ENSMUST00000057792.9	known	0.05	7.0	145	8;6	145	y	0.05	3.5	70	3;4	70	y	0.03	5.5	178	7;4	178	y	0.06	11.5	172	15;8	172	y	0.05	10.5	210	11;10	210	y	0.02	2.5	118	3;2	118	y	0.06	11.0	178	12;10	178	y	0.04	4.0	106	4;4	106	y	0.06	7.5	122	10;5	122	y	0.07	12.5	164	16;9	164	y	0.06	7.0	113	7;7	113	y	0.06	10.5	180	9;12	180	y	ENSMUSG00000032667.18	Pon2	chr6	protein_coding	paraoxonase 2
known_NIR_15893	chr6	54017140	54150449	+	54017140	54044714	3pMXE	ENSMUST00000138930.2	known	1.00	45	0	45	0	n	1.00	30	0	30	0	n	1.00	32	0	32	0	n	0.98	46	1	46	1	n	1.00	78	0	78	0	n	1.00	20	0	20	0	n	1.00	41	0	41	0	n	1.00	41	0	41	0	n	1.00	40	0	40	0	n	0.96	50	2	50	2	y	1.00	30	0	30	0	n	1.00	50	0	50	0	n	ENSMUSG00000004633.18	Chn2	chr6	protein_coding	chimerin 2
known_NIR_15894	chr6	54197687	54198906	+	54197687	54250061	A3SS	ENSMUST00000046856.14	known	0.02	1	59	1	59	n	0.03	2	59	2	59	y	0.06	4	63	4	63	y	0.05	3	59	3	59	y	0.03	3	96	3	96	y	0.00	0	38	0	38	n	0.01	1	70	1	70	n	0.04	2	46	2	46	y	0.02	1	43	1	43	n	0.02	2	103	2	103	y	0.05	3	61	3	61	y	0.01	1	89	1	89	n	ENSMUSG00000004633.18	Chn2	chr6	protein_coding	chimerin 2
known_NIR_15895	chr6	54465015	54473465	+	54465015;54466094	54465993;54473465	ES	ENSMUST00000132855.8	known	0.00	0	5.0	0	5;5	n	0.00	0	7.5	0	6;9	n	0.00	0	8.0	0	5;11	n	0.00	0	11.0	0	11;11	n	0.08	1	11.0	1	8;14	n	0.00	0	2.5	0	4;1	n	0.12	1	7.5	1	9;6	n	0.29	2	5.0	2	5;5	y	0.00	0	7.0	0	7;7	n	0.06	1	16.5	1	19;14	n	0.00	0	6.5	0	6;7	n	0.00	0	5.5	0	5;6	n	ENSMUSG00000086040.9	Wipf3	chr6	protein_coding	WAS/WASL interacting protein family, member 3
known_NIR_15896	chr6	54559954	54562788	-	54556671	54562788	A3SS	ENSMUST00000046520.13	known	0.00	0	10	0	10	n	0.67	2	1	2	1	n	0.24	5	16	5	16	y	0.00	0	14	0	14	n	0.20	2	8	2	8	y	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.11	2	16	2	16	y	0.10	1	9	1	9	n	0.00	0	9	0	9	n	ENSMUSG00000038074.17	Fkbp14	chr6	protein_coding	FK506 binding protein 14
known_NIR_15897	chr6	54562915;54564070	54563981;54566258	-	54562915	54566258	cassetteExon	ENSMUST00000046520.13	known	0.65	5.5	3	6;5	3	y	1.00	1.0	0	1;1	0	n	0.21	3.5	13	4;3	13	y	0.68	6.5	3	9;4	3	y	0.38	2.5	4	2;3	4	n	0.65	5.5	3	3;8	3	y	0.57	8.0	6	6;10	6	y	0.45	5.0	6	2;8	6	y	0.47	3.5	4	2;5	4	y	0.88	7.5	1	9;6	1	n	0.81	8.5	2	10;7	2	y	0.82	4.5	1	4;5	1	n	ENSMUSG00000038074.17	Fkbp14	chr6	protein_coding	FK506 binding protein 14
known_NIR_15898	chr6	54963953	54966485	-	54963953	54966397	A5SS	ENSMUST00000131475.2	known	0.15	6	33	6	33	y	0.12	3	21	3	21	y	0.05	3	56	3	56	y	0.09	4	41	4	41	y	0.00	0	39	0	39	n	0.14	3	18	3	18	y	0.16	6	31	6	31	y	0.00	0	28	0	28	n	0.20	6	24	6	24	y	0.15	4	22	4	22	y	0.14	5	30	5	30	y	0.10	5	46	5	46	y	ENSMUSG00000002797.10	Ggct	chr6	protein_coding	gamma-glutamyl cyclotransferase
known_NIR_15899	chr6	54966542	54969555	-	54966542	54969680	A5SS	ENSMUST00000131475.2	known	0.02	1	48	1	48	n	0.00	0	25	0	25	n	0.07	2	26	2	26	y	0.00	0	46	0	46	n	0.00	0	38	0	38	n	0.00	0	38	0	38	n	0.03	1	39	1	39	n	0.00	0	21	0	21	n	0.00	0	37	0	37	n	0.00	0	45	0	45	n	0.00	0	37	0	37	n	0.08	3	35	3	35	y	ENSMUSG00000002797.10	Ggct	chr6	protein_coding	gamma-glutamyl cyclotransferase
known_NIR_15900	chr6	56679153	56680303	-	56679153	56679991	A5SS&ES	ENSMUST00000170382.5	known	0.00	0	87	0	87	n	0.00	0	71	0	71	n	0.00	0	88	0	88	n	0.02	1	55	1	55	n	0.00	0	72	0	72	n	0.00	0	49	0	49	n	0.00	0	86	0	86	n	0.05	3	53	3	53	y	0.00	0	68	0	68	n	0.00	0	52	0	52	n	0.00	0	75	0	75	n	0.04	3	70	3	70	y	ENSMUSG00000091625.9	Lsm5	chr6	protein_coding	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated
known_NIR_15901	chr6	56707696	56712348	+	56707665	56712348	A5SS	ENSMUST00000031805.11	known	0.14	1	6	1	6	n	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.07	1	13	1	13	n	0.17	2	10	2	10	y	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.20	1	4	1	4	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.00	0	13	0	13	n	ENSMUSG00000029787.11	Avl9	chr6	protein_coding	AVL9 cell migration associated
known_NIR_15902	chr6	56766685	56774148	-	56766685	56774444	A5SS	ENSMUST00000114323.8	known	0.00	0	9	0	9	n	0.40	2	3	2	3	n	0.00	0	13	0	13	n	0.20	2	8	2	8	y	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.07	1	13	1	13	n	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	ENSMUSG00000059486.12	Kbtbd2	chr6	protein_coding	kelch repeat and BTB (POZ) domain containing 2
known_NIR_15903	chr6	56766685	56774468	-	56766685	56774444	A5SS	ENSMUST00000114323.8	known	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.20	2	8	2	8	y	0.14	2	12	2	12	y	0.14	1	6	1	6	n	0.07	1	13	1	13	n	0.06	1	17	1	17	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.14	2	12	2	12	y	ENSMUSG00000059486.12	Kbtbd2	chr6	protein_coding	kelch repeat and BTB (POZ) domain containing 2
known_NIR_15904	chr6	56869873;56874814	56874760;56900657	-	56869873	56900657	cassetteExon	ENSMUST00000031793.8	known	0.27	9.5	26	6;13	26	y	0.27	11.5	31	13;10	31	y	0.14	8.0	51	15;1	51	n	0.13	8.5	59	12;5	59	y	0.07	4.0	52	7;1	52	n	0.20	5.0	20	6;4	20	y	0.19	12.5	53	20;5	53	y	0.23	7.5	25	10;5	25	y	0.20	10.0	40	12;8	40	y	0.19	12.5	52	17;8	52	y	0.23	12.5	41	13;12	41	y	0.16	12.5	64	15;10	64	y	ENSMUSG00000029780.15	Nt5c3	chr6	protein_coding	5'-nucleotidase, cytosolic III
known_NIR_15905	chr6	56869873;56890879	56890791;56900657	-	56869873	56900657	cassetteExon	ENSMUST00000031793.8	known	0.00	0.0	26	0;0	26	n	0.00	0.0	31	0;0	31	n	0.02	1.0	51	1;1	51	n	0.00	0.0	59	0;0	59	n	0.01	0.5	52	0;1	52	n	0.00	0.0	20	0;0	20	n	0.03	1.5	53	1;2	53	n	0.00	0.0	25	0;0	25	n	0.01	0.5	40	0;1	40	n	0.00	0.0	52	0;0	52	n	0.05	2.0	41	2;2	41	y	0.00	0.0	64	0;0	64	n	ENSMUSG00000029780.15	Nt5c3	chr6	protein_coding	5'-nucleotidase, cytosolic III
known_NIR_15906	chr6	56869873;56890879	56890791;56900657	-	56869873;56874814	56874760;56900657	MXE	ENSMUST00000152447.9	known	0.00	0.0	9.5	0;0	6;13	n	0.00	0.0	11.5	0;0	13;10	n	0.11	1.0	8.0	1;1	15;1	n	0.00	0.0	8.5	0;0	12;5	n	0.11	0.5	4.0	0;1	7;1	n	0.00	0.0	5.0	0;0	6;4	n	0.11	1.5	12.5	1;2	20;5	n	0.00	0.0	7.5	0;0	10;5	n	0.05	0.5	10.0	0;1	12;8	n	0.00	0.0	12.5	0;0	17;8	n	0.14	2.0	12.5	2;2	13;12	y	0.00	0.0	12.5	0;0	15;10	n	ENSMUSG00000029780.15	Nt5c3	chr6	protein_coding	5'-nucleotidase, cytosolic III
known_NIR_15907	chr6	56869873;56900097	56900052;56900657	-	56869873	56900657	cassetteExon	ENSMUST00000031793.8	known	0.00	0.0	26	0;0	26	n	0.02	0.5	31	1;0	31	n	0.02	1.0	51	1;1	51	n	0.04	2.5	59	3;2	59	y	0.01	0.5	52	0;1	52	n	0.02	0.5	20	0;1	20	n	0.00	0.0	53	0;0	53	n	0.00	0.0	25	0;0	25	n	0.00	0.0	40	0;0	40	n	0.03	1.5	52	0;3	52	n	0.05	2.0	41	2;2	41	y	0.02	1.0	64	2;0	64	n	ENSMUSG00000029780.15	Nt5c3	chr6	protein_coding	5'-nucleotidase, cytosolic III
known_NIR_15908	chr6	56869873;56900097	56900052;56900657	-	56869873;56874814	56874760;56900657	MXE	ENSMUST00000152447.9	known	0.00	0.0	9.5	0;0	6;13	n	0.04	0.5	11.5	1;0	13;10	n	0.11	1.0	8.0	1;1	15;1	n	0.23	2.5	8.5	3;2	12;5	y	0.11	0.5	4.0	0;1	7;1	n	0.09	0.5	5.0	0;1	6;4	n	0.00	0.0	12.5	0;0	20;5	n	0.00	0.0	7.5	0;0	10;5	n	0.00	0.0	10.0	0;0	12;8	n	0.11	1.5	12.5	0;3	17;8	n	0.14	2.0	12.5	2;2	13;12	y	0.07	1.0	12.5	2;0	15;10	n	ENSMUSG00000029780.15	Nt5c3	chr6	protein_coding	5'-nucleotidase, cytosolic III
known_NIR_15909	chr6	56869873;56900097	56900052;56900657	-	56869873;56890879	56874760;56900657	MXE	ENSMUST00000134577.2	known	0.00	0.0	3.0	0;0	6;0	n	0.07	0.5	6.5	1;0	13;0	n	0.11	1.0	8.0	1;1	15;1	n	0.29	2.5	6.0	3;2	12;0	n	0.11	0.5	4.0	0;1	7;1	n	0.14	0.5	3.0	0;1	6;0	n	0.00	0.0	11.0	0;0	20;2	n	0.00	0.0	5.0	0;0	10;0	n	0.00	0.0	6.5	0;0	12;1	n	0.15	1.5	8.5	0;3	17;0	n	0.21	2.0	7.5	2;2	13;2	y	0.12	1.0	7.5	2;0	15;0	n	ENSMUSG00000029780.15	Nt5c3	chr6	protein_coding	5'-nucleotidase, cytosolic III
known_NIR_15910	chr6	56874814	56900657	-	56874814	56878823	5pMXE	ENSMUST00000101367.9	known	1.00	13	0	13	0	n	1.00	10	0	10	0	n	0.12	1	7	1	7	n	0.71	5	2	5	2	n	0.50	1	1	1	1	n	1.00	4	0	4	0	n	0.36	5	9	5	9	y	1.00	5	0	5	0	n	1.00	8	0	8	0	n	0.67	8	4	8	4	y	1.00	12	0	12	0	n	0.67	10	5	10	5	y	ENSMUSG00000029780.15	Nt5c3	chr6	protein_coding	5'-nucleotidase, cytosolic III
known_NIR_15911	chr6	57511494	57512265	-	57502239	57512265	A3SS	ENSMUST00000042766.6	known	0.03	1	36	1	36	n	0.00	0	11	0	11	n	0.08	2	23	2	23	y	0.00	0	77	0	77	n	0.05	3	56	3	56	y	0.00	0	19	0	19	n	0.00	0	40	0	40	n	0.00	0	32	0	32	n	0.00	0	40	0	40	n	0.00	0	74	0	74	n	0.06	2	33	2	33	y	0.00	0	68	0	68	n	ENSMUSG00000037826.6	Ppm1k	chr6	protein_coding	protein phosphatase 1K (PP2C domain containing)
known_NIR_15912	chr6	57581185;57584163	57584027;57584619	+	57581185	57584619	cassetteExon	ENSMUST00000204686.2	known	0.94	14.5	1	14;15	1	n	1.00	9.5	0	9;10	0	n	1.00	31.5	0	31;32	0	n	0.96	26.0	1	20;32	1	n	1.00	25.0	0	16;34	0	n	1.00	16.5	0	12;21	0	n	0.90	18.0	2	17;19	2	y	1.00	15.5	0	21;10	0	n	1.00	17.5	0	13;22	0	n	1.00	25.0	0	16;34	0	n	1.00	10.5	0	10;11	0	n	1.00	20.5	0	27;14	0	n	ENSMUSG00000108112.2	Gm45193	chr6	lncRNA	predicted gene 45193
known_NIR_15913	chr6	58617612	58632623	+	58574093	58632623	A5SS	ENSMUST00000148008.2	known	0.97	36	1	36	1	n	1.00	25	0	25	0	n	0.93	39	3	39	3	y	1.00	48	0	48	0	n	0.99	66	1	66	1	n	0.93	27	2	27	2	y	0.94	60	4	60	4	y	0.97	33	1	33	1	n	1.00	37	0	37	0	n	1.00	66	0	66	0	n	0.96	45	2	45	2	y	0.96	44	2	44	2	y	ENSMUSG00000029802.14	Abcg2	chr6	protein_coding	ATP binding cassette subfamily G member 2 (Junior blood group)
known_NIR_15914	chr6	58617612;58627528	58627446;58632623	+	58617612	58632623	cassetteExon	ENSMUST00000124542.2	known	0.08	3.0	36	2;4	36	y	0.07	2.0	25	2;2	25	y	0.09	4.0	39	4;4	39	y	0.12	6.5	48	4;9	48	y	0.13	10.0	66	7;13	66	y	0.11	3.5	27	4;3	27	y	0.06	3.5	60	2;5	60	y	0.01	0.5	33	0;1	33	n	0.06	2.5	37	3;2	37	y	0.13	10.0	66	5;15	66	y	0.16	8.5	45	5;12	45	y	0.08	4.0	44	3;5	44	y	ENSMUSG00000029802.14	Abcg2	chr6	protein_coding	ATP binding cassette subfamily G member 2 (Junior blood group)
known_NIR_15915	chr6	58627528	58632623	+	58574093	58632623	A5SS	ENSMUST00000148008.2	known	0.80	4	1	4	1	n	1.00	2	0	2	0	n	0.57	4	3	4	3	n	1.00	9	0	9	0	n	0.93	13	1	13	1	n	0.60	3	2	3	2	n	0.56	5	4	5	4	n	0.50	1	1	1	1	n	1.00	2	0	2	0	n	1.00	15	0	15	0	n	0.86	12	2	12	2	y	0.71	5	2	5	2	n	ENSMUSG00000029802.14	Abcg2	chr6	protein_coding	ATP binding cassette subfamily G member 2 (Junior blood group)
known_NIR_15916	chr6	58662806	58666524	+	58662806	58666540	A3SS	ENSMUST00000031822.13	known	0.01	1	144	1	144	n	0.00	0	177	0	177	n	0.00	0	120	0	120	n	0.01	1	179	1	179	n	0.00	1	205	1	205	n	0.01	1	72	1	72	n	0.02	4	225	4	225	y	0.00	0	80	0	80	n	0.00	0	178	0	178	n	0.02	5	263	5	263	y	0.00	0	193	0	193	n	0.01	1	151	1	151	n	ENSMUSG00000029802.14	Abcg2	chr6	protein_coding	ATP binding cassette subfamily G member 2 (Junior blood group)
known_NIR_15917	chr6	6068699	6073402	-	6052903	6073402	A3SS	ENSMUST00000015256.15	known	0.07	21	301	21	301	y	0.09	24	246	24	246	y	0.05	8	167	8	167	y	0.03	12	426	12	426	y	0.04	18	422	18	422	y	0.06	7	105	7	105	y	0.05	21	413	21	413	y	0.02	3	171	3	171	y	0.03	8	259	8	259	y	0.03	15	523	15	523	y	0.09	32	309	32	309	y	0.04	18	410	18	410	y	ENSMUSG00000015112.16	Slc25a13	chr6	protein_coding	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13
known_NIR_15918	chr6	65019945	65020190	+	65019714	65020190	A5SS	ENSMUST00000204801.3	known	0.58	7	5	7	5	y	0.82	9	2	9	2	y	0.67	12	6	12	6	y	0.59	13	9	13	9	y	0.80	16	4	16	4	y	0.50	6	6	6	6	y	0.48	10	11	10	11	y	0.86	19	3	19	3	y	0.69	9	4	9	4	y	0.64	7	4	7	4	y	1.00	11	0	11	0	n	0.85	11	2	11	2	y	ENSMUSG00000029920.10	Smarcad1	chr6	protein_coding	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
known_NIR_15919	chr6	65020429	65027027	+	65020429	65020820	3pMXE	ENSMUST00000205118.3	known	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.09	1	10	1	10	n	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.07	1	13	1	13	n	0.00	0	7	0	7	n	0.07	1	14	1	14	n	0.25	3	9	3	9	y	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	ENSMUSG00000029920.10	Smarcad1	chr6	protein_coding	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
known_NIR_15920	chr6	65020429	65029604	+	65020429	65020820	3pMXE	ENSMUST00000205118.3	known	0.42	5	7	5	7	y	0.38	5	8	5	8	y	0.70	23	10	23	10	y	0.42	13	18	13	18	y	0.54	15	13	15	13	y	0.46	11	13	11	13	y	0.59	10	7	10	7	y	0.39	9	14	9	14	y	0.36	5	9	5	9	y	0.52	14	13	14	13	y	0.31	4	9	4	9	y	0.54	7	6	7	6	y	ENSMUSG00000029920.10	Smarcad1	chr6	protein_coding	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
known_NIR_15921	chr6	66873499	66891437	+	66873511	66891437	A5SS	ENSMUST00000043148.13	known	0.09	5	49	5	49	y	0.20	10	39	10	39	y	0.19	25	109	25	109	y	0.25	17	52	17	52	y	0.20	17	67	17	67	y	0.32	27	57	27	57	y	0.24	13	42	13	42	y	0.12	6	46	6	46	y	0.16	7	38	7	38	y	0.13	9	58	9	58	y	0.24	14	44	14	44	y	0.06	4	62	4	62	y	ENSMUSG00000036402.14	Gng12	chr6	protein_coding	guanine nucleotide binding protein (G protein), gamma 12
known_NIR_15922	chr6	66873973	66891437	+	66873499	66891437	A5SS	ENSMUST00000114227.8	known	0.71	12	5	12	5	y	0.41	7	10	7	10	y	0.46	21	25	21	25	y	0.62	28	17	28	17	y	0.65	31	17	31	17	y	0.21	7	27	7	27	y	0.73	35	13	35	13	y	0.75	18	6	18	6	y	0.65	13	7	13	7	y	0.73	24	9	24	9	y	0.60	21	14	21	14	y	0.85	23	4	23	4	y	ENSMUSG00000036402.14	Gng12	chr6	protein_coding	guanine nucleotide binding protein (G protein), gamma 12
known_NIR_15923	chr6	66873973	66891437	+	66873511	66891437	A5SS	ENSMUST00000043148.13	known	0.20	12	49	12	49	y	0.15	7	39	7	39	y	0.16	21	109	21	109	y	0.35	28	52	28	52	y	0.32	31	67	31	67	y	0.11	7	57	7	57	y	0.45	35	42	35	42	y	0.28	18	46	18	46	y	0.25	13	38	13	38	y	0.29	24	58	24	58	y	0.32	21	44	21	44	y	0.27	23	62	23	62	y	ENSMUSG00000036402.14	Gng12	chr6	protein_coding	guanine nucleotide binding protein (G protein), gamma 12
known_NIR_15924	chr6	66891494	66992709	+	66891494;66920861	66920809;66992709	ES	ENSMUST00000043148.13	known	0.76	89	28.0	89	25;31	y	0.73	62	22.5	62	20;25	y	0.70	168	72.0	168	67;77	y	0.79	98	25.5	98	25;26	y	0.66	98	51.5	98	44;59	y	0.66	92	47.0	92	46;48	y	0.63	80	46.0	80	37;55	y	0.68	69	32.5	69	33;32	y	0.69	52	23.0	52	20;26	y	0.70	96	41.0	96	29;53	y	0.79	87	22.5	87	18;27	y	0.72	73	29.0	73	29;29	y	ENSMUSG00000036402.14	Gng12	chr6	protein_coding	guanine nucleotide binding protein (G protein), gamma 12
known_NIR_15925	chr6	66891494;66920866	66920809;66992709	+	66891494	66992709	cassetteExon	ENSMUST00000114228.8	known	0.14	14.0	89	25;3	89	y	0.18	14.0	62	20;8	62	y	0.18	37.0	168	67;7	168	y	0.15	17.5	98	25;10	98	y	0.20	24.5	98	44;5	98	y	0.23	28.0	92	46;10	92	y	0.20	20.5	80	37;4	80	y	0.22	19.5	69	33;6	69	y	0.18	11.5	52	20;3	52	y	0.14	15.5	96	29;2	96	y	0.11	10.5	87	18;3	87	y	0.22	20.0	73	29;11	73	y	ENSMUSG00000036402.14	Gng12	chr6	protein_coding	guanine nucleotide binding protein (G protein), gamma 12
known_NIR_15926	chr6	66920866	66992709	+	66920861	66992709	A5SS	ENSMUST00000043148.13	known	0.09	3	31	3	31	y	0.24	8	25	8	25	y	0.08	7	77	7	77	y	0.28	10	26	10	26	y	0.08	5	59	5	59	y	0.17	10	48	10	48	y	0.07	4	55	4	55	y	0.16	6	32	6	32	y	0.10	3	26	3	26	y	0.04	2	53	2	53	y	0.10	3	27	3	27	y	0.28	11	29	11	29	y	ENSMUSG00000036402.14	Gng12	chr6	protein_coding	guanine nucleotide binding protein (G protein), gamma 12
known_NIR_15927	chr6	66994305	66994448	+	66992827	66994448	A5SS	ENSMUST00000043148.13	known	0.00	0	93	0	93	n	0.00	0	76	0	76	n	0.00	0	268	0	268	n	0.00	0	101	0	101	n	0.00	0	138	0	138	n	0.00	0	130	0	130	n	0.00	0	111	0	111	n	0.00	0	109	0	109	n	0.00	0	80	0	80	n	0.00	0	123	0	123	n	0.00	0	110	0	110	n	0.02	2	114	2	114	y	ENSMUSG00000036402.14	Gng12	chr6	protein_coding	guanine nucleotide binding protein (G protein), gamma 12
known_NIR_15928	chr6	67249011	67249141	+	67249011	67249123	A3SS	ENSMUST00000042990.7	known	0.37	147	255	147	255	y	0.36	135	239	135	239	y	0.38	266	434	266	434	y	0.39	186	285	186	285	y	0.41	230	330	230	330	y	0.45	156	190	156	190	y	0.37	254	429	254	429	y	0.34	108	211	108	211	y	0.35	138	261	138	261	y	0.37	188	325	188	325	y	0.39	169	269	169	269	y	0.39	215	342	215	342	y	ENSMUSG00000036371.7	Serbp1	chr6	protein_coding	serpine1 mRNA binding protein 1
known_NIR_15929	chr6	67249011	67249848	+	67249011	67249123	A3SS&ES	ENSMUST00000042990.7	known	0.00	0	255	0	255	n	0.00	0	239	0	239	n	0.01	3	434	3	434	y	0.00	1	285	1	285	n	0.00	0	330	0	330	n	0.00	0	190	0	190	n	0.01	4	429	4	429	y	0.00	0	211	0	211	n	0.00	0	261	0	261	n	0.00	0	325	0	325	n	0.00	0	269	0	269	n	0.00	0	342	0	342	n	ENSMUSG00000036371.7	Serbp1	chr6	protein_coding	serpine1 mRNA binding protein 1
known_NIR_15930	chr6	67249011	67249848	+	67249011	67249141	A3SS&ES	ENSMUST00000203436.3	known	0.00	0	147	0	147	n	0.00	0	135	0	135	n	0.01	3	266	3	266	y	0.01	1	186	1	186	n	0.00	0	230	0	230	n	0.00	0	156	0	156	n	0.02	4	254	4	254	y	0.00	0	108	0	108	n	0.00	0	138	0	138	n	0.00	0	188	0	188	n	0.00	0	169	0	169	n	0.00	0	215	0	215	n	ENSMUSG00000036371.7	Serbp1	chr6	protein_coding	serpine1 mRNA binding protein 1
known_NIR_15931	chr6	67249011	67249848	+	67249212	67249848	A5SS&ES	ENSMUST00000205091.3	known	0.00	0	359	0	359	n	0.00	0	343	0	343	n	0.01	3	560	3	560	y	0.00	1	393	1	393	n	0.00	0	439	0	439	n	0.00	0	285	0	285	n	0.01	4	531	4	531	y	0.00	0	305	0	305	n	0.00	0	288	0	288	n	0.00	0	460	0	460	n	0.00	0	402	0	402	n	0.00	0	437	0	437	n	ENSMUSG00000036371.7	Serbp1	chr6	protein_coding	serpine1 mRNA binding protein 1
known_NIR_15932	chr6	67249011;67249212	67249123;67249848	+	67249011	67249848	cassetteExon	ENSMUST00000205106.3	known	1.00	307.0	0	255;359	0	n	1.00	291.0	0	239;343	0	n	0.99	497.0	3	434;560	3	y	1.00	339.0	1	285;393	1	n	1.00	384.5	0	330;439	0	n	1.00	237.5	0	190;285	0	n	0.99	480.0	4	429;531	4	y	1.00	258.0	0	211;305	0	n	1.00	274.5	0	261;288	0	n	1.00	392.5	0	325;460	0	n	1.00	335.5	0	269;402	0	n	1.00	389.5	0	342;437	0	n	ENSMUSG00000036371.7	Serbp1	chr6	protein_coding	serpine1 mRNA binding protein 1
known_NIR_15933	chr6	67249011;67249212	67249141;67249848	+	67249011	67249848	cassetteExon	ENSMUST00000205106.3	known	1.00	253.0	0	147;359	0	n	1.00	239.0	0	135;343	0	n	0.99	413.0	3	266;560	3	y	1.00	289.5	1	186;393	1	n	1.00	334.5	0	230;439	0	n	1.00	220.5	0	156;285	0	n	0.99	392.5	4	254;531	4	y	1.00	206.5	0	108;305	0	n	1.00	213.0	0	138;288	0	n	1.00	324.0	0	188;460	0	n	1.00	285.5	0	169;402	0	n	1.00	326.0	0	215;437	0	n	ENSMUSG00000036371.7	Serbp1	chr6	protein_coding	serpine1 mRNA binding protein 1
known_NIR_15934	chr6	67249212	67249848	+	67249212	67249803	A3SS	ENSMUST00000042990.7	known	0.74	359	124	359	124	y	0.77	343	103	343	103	y	0.75	560	189	560	189	y	0.70	393	166	393	166	y	0.74	439	158	439	158	y	0.79	285	78	285	78	y	0.71	531	215	531	215	y	0.77	305	92	305	92	y	0.73	288	109	288	109	y	0.74	460	158	460	158	y	0.77	402	118	402	118	y	0.74	437	157	437	157	y	ENSMUSG00000036371.7	Serbp1	chr6	protein_coding	serpine1 mRNA binding protein 1
known_NIR_15935	chr6	67249216	67249803	+	67249212	67249803	A5SS	ENSMUST00000042990.7	known	0.00	0	124	0	124	n	0.02	2	103	2	103	y	0.00	0	189	0	189	n	0.00	0	166	0	166	n	0.00	0	158	0	158	n	0.00	0	78	0	78	n	0.01	2	215	2	215	y	0.00	0	92	0	92	n	0.00	0	109	0	109	n	0.01	1	158	1	158	n	0.00	0	118	0	118	n	0.00	0	157	0	157	n	ENSMUSG00000036371.7	Serbp1	chr6	protein_coding	serpine1 mRNA binding protein 1
known_NIR_15936	chr6	6956200	6957004	+	6956200	7038854	A3SS	ENSMUST00000040826.6	known	0.11	4	33	4	33	y	0.02	1	44	1	44	n	0.08	4	45	4	45	y	0.09	3	31	3	31	y	0.00	0	64	0	64	n	0.10	3	27	3	27	y	0.08	4	49	4	49	y	0.10	3	27	3	27	y	0.15	6	34	6	34	y	0.13	8	54	8	54	y	0.00	0	46	0	46	n	0.08	4	48	4	48	y	ENSMUSG00000042505.7	Sdhaf3	chr6	protein_coding	succinate dehydrogenase complex assembly factor 3
known_NIR_15937	chr6	70835500	70841482	+	70835500	70853662	A3SS	ENSMUST00000034093.15	known	0.33	3	6	3	6	n	0.29	2	5	2	5	n	0.03	2	57	2	57	y	0.04	1	22	1	22	n	0.03	1	36	1	36	n	0.10	3	26	3	26	y	0.11	2	16	2	16	y	0.05	1	19	1	19	n	0.25	3	9	3	9	y	0.21	5	19	5	19	y	0.25	3	9	3	9	y	0.07	1	13	1	13	n	ENSMUSG00000031668.15	Eif2ak3	chr6	protein_coding	eukaryotic translation initiation factor 2 alpha kinase 3
known_NIR_15938	chr6	71116927	71121275	-	71116927;71118438	71118204;71121275	ES	ENSMUST00000160918.8	known	0.12	8	58.5	8	58;59	y	0.13	5	34.0	5	42;26	y	0.08	4	45.5	4	65;26	y	0.00	0	51.5	0	62;41	n	0.06	5	80.5	5	107;54	y	0.06	2	30.0	2	48;12	y	0.05	4	70.5	4	89;52	y	0.05	2	40.5	2	53;28	y	0.03	2	67.0	2	80;54	y	0.04	4	99.5	4	129;70	y	0.08	6	68.5	6	84;53	y	0.00	0	69.0	0	88;50	n	ENSMUSG00000054474.16	Thnsl2	chr6	protein_coding	threonine synthase-like 2 (bacterial)
known_NIR_15939	chr6	71118438;71118736	71118669;71121275	-	71118438	71121275	cassetteExon	ENSMUST00000160918.8	known	0.08	5.0	59	7;3	59	y	0.05	1.5	26	3;0	26	n	0.20	6.5	26	5;8	26	y	0.23	12.5	41	9;16	41	y	0.11	6.5	54	6;7	54	y	0.33	6.0	12	7;5	12	y	0.18	11.5	52	12;11	52	y	0.21	7.5	28	6;9	28	y	0.07	4.0	54	3;5	54	y	0.08	6.5	70	6;7	70	y	0.17	10.5	53	11;10	53	y	0.14	8.0	50	11;5	50	y	ENSMUSG00000054474.16	Thnsl2	chr6	protein_coding	threonine synthase-like 2 (bacterial)
known_NIR_15940	chr6	71118736	71121275	-	71116927	71121275	A3SS	ENSMUST00000170455.2	known	0.27	3	8	3	8	y	0.00	0	5	0	5	n	0.67	8	4	8	4	y	1.00	16	0	16	0	n	0.58	7	5	7	5	y	0.71	5	2	5	2	n	0.73	11	4	11	4	y	0.82	9	2	9	2	y	0.71	5	2	5	2	n	0.64	7	4	7	4	y	0.62	10	6	10	6	y	1.00	5	0	5	0	n	ENSMUSG00000054474.16	Thnsl2	chr6	protein_coding	threonine synthase-like 2 (bacterial)
known_NIR_15941	chr6	71202505	71214341	-	71202505;71212365	71212327;71214341	ES	ENSMUST00000074301.10	known	0.00	0	4.0	0	8;0	n	0.00	0	2.0	0	4;0	n	0.00	0	8.0	0	16;0	n	0.00	0	6.0	0	12;0	n	0.00	0	6.0	0	12;0	n	0.00	0	4.5	0	9;0	n	0.24	4	13.0	4	21;5	y	0.00	0	7.0	0	14;0	n	0.00	0	2.5	0	5;0	n	0.00	0	7.5	0	15;0	n	0.00	0	3.5	0	7;0	n	0.00	0	4.5	0	9;0	n	ENSMUSG00000055027.18	Smyd1	chr6	protein_coding	SET and MYND domain containing 1
known_NIR_15942	chr6	71248824	71260948	+	71248824;71259301	71259135;71260948	ES	ENSMUST00000204436.3	known	0.00	0	118.5	0	88;149	n	0.00	0	128.5	0	101;156	n	0.01	2	326.0	2	217;435	y	0.00	0	158.5	0	111;206	n	0.00	0	215.5	0	120;311	n	0.00	0	182.0	0	127;237	n	0.01	1	189.5	1	119;260	n	0.00	0	152.0	0	83;221	n	0.00	0	140.0	0	97;183	n	0.00	0	209.0	0	123;295	n	0.00	0	137.5	0	99;176	n	0.01	2	183.0	2	113;253	y	ENSMUSG00000053012.18	Krcc1	chr6	protein_coding	lysine-rich coiled-coil 1
known_NIR_15943	chr6	71248824	71260948	+	71259301	71260948	5pMXE	ENSMUST00000080949.8	known	0.00	0	149	0	149	n	0.00	0	156	0	156	n	0.00	2	435	2	435	y	0.00	0	206	0	206	n	0.00	0	311	0	311	n	0.00	0	237	0	237	n	0.00	1	260	1	260	n	0.00	0	221	0	221	n	0.00	0	183	0	183	n	0.00	0	295	0	295	n	0.00	0	176	0	176	n	0.01	2	253	2	253	y	ENSMUSG00000053012.18	Krcc1	chr6	protein_coding	lysine-rich coiled-coil 1
known_NIR_15944	chr6	71249043	71259135	+	71248824	71259135	A5SS	ENSMUST00000204436.3	known	0.00	0	88	0	88	n	0.00	0	101	0	101	n	0.01	2	217	2	217	y	0.00	0	111	0	111	n	0.01	1	120	1	120	n	0.01	1	127	1	127	n	0.01	1	119	1	119	n	0.01	1	83	1	83	n	0.00	0	97	0	97	n	0.00	0	123	0	123	n	0.01	1	99	1	99	n	0.00	0	113	0	113	n	ENSMUSG00000053012.18	Krcc1	chr6	protein_coding	lysine-rich coiled-coil 1
known_NIR_15945	chr6	71259301;71260189	71260005;71260948	+	71259301	71260948	cassetteExon	ENSMUST00000204436.3	known	0.00	0.0	149	0;0	149	n	0.01	1.0	156	2;0	156	n	0.01	2.5	435	3;2	435	y	0.01	1.5	206	2;1	206	n	0.00	0.5	311	0;1	311	n	0.00	0.5	237	0;1	237	n	0.01	1.5	260	2;1	260	n	0.00	1.0	221	2;0	221	n	0.00	0.0	183	0;0	183	n	0.00	0.5	295	0;1	295	n	0.00	0.0	176	0;0	176	n	0.01	2.0	253	1;3	253	n	ENSMUSG00000053012.18	Krcc1	chr6	protein_coding	lysine-rich coiled-coil 1
known_NIR_15946	chr6	71482833	71485670	+	71482833	71485853	A3SS	ENSMUST00000064637.11	known	0.02	2	116	2	116	y	0.03	3	84	3	84	y	0.00	0	142	0	142	n	0.00	0	134	0	134	n	0.00	0	160	0	160	n	0.02	2	106	2	106	y	0.00	0	166	0	166	n	0.00	0	108	0	108	n	0.04	3	81	3	81	y	0.02	4	166	4	166	y	0.00	0	109	0	109	n	0.03	4	153	4	153	y	ENSMUSG00000052656.13	Rnf103	chr6	protein_coding	ring finger protein 103
known_NIR_15947	chr6	71520951	71529383	+	71521017	71529383	A5SS	ENSMUST00000059462.12	known	0.01	2	176	2	176	y	0.00	0	160	0	160	n	0.01	3	232	3	232	y	0.00	1	202	1	202	n	0.00	0	248	0	248	n	0.01	2	133	2	133	y	0.00	0	263	0	263	n	0.00	0	103	0	103	n	0.01	2	178	2	178	y	0.01	3	281	3	281	y	0.02	4	225	4	225	y	0.01	3	256	3	256	y	ENSMUSG00000053119.12	Chmp3	chr6	protein_coding	charged multivesicular body protein 3
known_NIR_15948	chr6	71521017	71537881	+	71521017;71529443	71529383;71537881	ES	ENSMUST00000059462.12	known	0.01	1	170.5	1	176;165	n	0.01	2	153.0	2	160;146	y	0.02	5	232.5	5	232;233	y	0.00	0	201.5	0	202;201	n	0.02	4	250.0	4	248;252	y	0.01	1	122.0	1	133;111	n	0.02	4	252.0	4	263;241	y	0.01	1	121.5	1	103;140	n	0.01	1	176.0	1	178;174	n	0.00	1	298.5	1	281;316	n	0.02	5	230.5	5	225;236	y	0.01	2	266.0	2	256;276	y	ENSMUSG00000053119.12	Chmp3	chr6	protein_coding	charged multivesicular body protein 3
known_NIR_15949	chr6	71521017	71537881	+	71536112	71537881	A5SS&ES	ENSMUST00000127774.8	known	0.17	1	5	1	5	n	0.40	2	3	2	3	n	0.42	5	7	5	7	y	0.00	0	11	0	11	n	0.40	4	6	4	6	y	0.20	1	4	1	4	n	0.50	4	4	4	4	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.10	1	9	1	9	n	0.71	5	2	5	2	n	0.29	2	5	2	5	n	ENSMUSG00000053119.12	Chmp3	chr6	protein_coding	charged multivesicular body protein 3
known_NIR_15950	chr6	71521017;71529443	71529383;71551099	+	71521017;71538060	71537881;71551099	MXE	ENSMUST00000204535.2	known	0.44	88.5	111.5	176;1	1;222	n	0.45	81.0	99.0	160;2	2;196	y	0.48	117.5	129.0	232;3	5;253	y	0.47	101.5	113.5	202;1	0;227	n	0.48	125.5	136.0	248;3	4;268	y	0.49	68.0	72.0	133;3	1;143	n	0.49	134.0	140.0	263;5	4;276	y	0.43	52.0	70.0	103;1	1;139	n	0.53	91.0	79.5	178;4	1;158	n	0.46	142.5	164.5	281;4	1;328	n	0.50	112.5	114.0	225;0	5;223	n	0.47	129.0	146.0	256;2	2;290	y	ENSMUSG00000053119.12	Chmp3	chr6	protein_coding	charged multivesicular body protein 3
known_NIR_15951	chr6	71521429	71529383	+	71520951	71529383	A5SS	ENSMUST00000127774.8	known	0.83	10	2	10	2	y	1.00	4	0	4	0	n	0.67	6	3	6	3	n	0.92	11	1	11	1	n	1.00	12	0	12	0	n	0.50	2	2	2	2	n	1.00	14	0	14	0	n	1.00	9	0	9	0	n	0.85	11	2	11	2	y	0.79	11	3	11	3	y	0.50	4	4	4	4	n	0.62	5	3	5	3	n	ENSMUSG00000053119.12	Chmp3	chr6	protein_coding	charged multivesicular body protein 3
known_NIR_15952	chr6	71521429	71529383	+	71521017	71529383	A5SS	ENSMUST00000059462.12	known	0.05	10	176	10	176	y	0.02	4	160	4	160	y	0.03	6	232	6	232	y	0.05	11	202	11	202	y	0.05	12	248	12	248	y	0.01	2	133	2	133	y	0.05	14	263	14	263	y	0.08	9	103	9	103	y	0.06	11	178	11	178	y	0.04	11	281	11	281	y	0.02	4	225	4	225	y	0.02	5	256	5	256	y	ENSMUSG00000053119.12	Chmp3	chr6	protein_coding	charged multivesicular body protein 3
known_NIR_15953	chr6	71529443	71535959	+	71529443	71551099	A3SS	ENSMUST00000204199.2	known	0.67	2	1	2	1	n	0.00	0	2	0	2	n	0.62	5	3	5	3	n	0.67	2	1	2	1	n	0.40	2	3	2	3	n	0.00	0	3	0	3	n	0.44	4	5	4	5	n	0.50	1	1	1	1	n	0.20	1	4	1	4	n	0.64	7	4	7	4	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	ENSMUSG00000053119.12	Chmp3	chr6	protein_coding	charged multivesicular body protein 3
known_NIR_15954	chr6	71529443	71551099	+	71529443;71538060	71537881;71551099	ES	ENSMUST00000059462.12	known	0.01	1	193.5	1	165;222	n	0.01	2	171.0	2	146;196	y	0.01	3	243.0	3	233;253	y	0.00	1	214.0	1	201;227	n	0.01	3	260.0	3	252;268	y	0.02	3	127.0	3	111;143	y	0.02	5	258.5	5	241;276	y	0.01	1	139.5	1	140;139	n	0.02	4	166.0	4	174;158	y	0.01	4	322.0	4	316;328	y	0.00	0	229.5	0	236;223	n	0.01	2	283.0	2	276;290	y	ENSMUSG00000053119.12	Chmp3	chr6	protein_coding	charged multivesicular body protein 3
known_NIR_15955	chr6	71529443;71536112	71535959;71537881	+	71529443	71537881	cassetteExon	ENSMUST00000059462.12	known	0.02	3.5	165	2;5	165	y	0.01	1.5	146	0;3	146	n	0.03	6.0	233	5;7	233	y	0.03	6.5	201	2;11	201	y	0.02	4.0	252	2;6	252	y	0.02	2.0	111	0;4	111	n	0.02	4.0	241	4;4	241	y	0.00	0.5	140	1;0	140	n	0.01	1.5	174	1;2	174	n	0.02	8.0	316	7;9	316	y	0.01	1.5	236	1;2	236	n	0.01	2.5	276	0;5	276	n	ENSMUSG00000053119.12	Chmp3	chr6	protein_coding	charged multivesicular body protein 3
known_NIR_15956	chr6	71529443;71536112	71535998;71537881	+	71529443	71537881	cassetteExon	ENSMUST00000059462.12	known	0.02	3.5	165	2;5	165	y	0.01	2.0	146	1;3	146	n	0.02	4.0	233	1;7	233	n	0.03	6.0	201	1;11	201	n	0.01	3.5	252	1;6	252	n	0.02	2.5	111	1;4	111	n	0.01	2.0	241	0;4	241	n	0.00	0.0	140	0;0	140	n	0.01	1.5	174	1;2	174	n	0.02	5.5	316	2;9	316	y	0.00	1.0	236	0;2	236	n	0.01	2.5	276	0;5	276	n	ENSMUSG00000053119.12	Chmp3	chr6	protein_coding	charged multivesicular body protein 3
known_NIR_15957	chr6	71584590	71588883	-	71584590	71588489	A5SS	ENSMUST00000065509.11	known	0.18	2	9	2	9	y	0.00	0	10	0	10	n	0.02	1	54	1	54	n	0.07	1	14	1	14	n	0.11	2	16	2	16	y	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.07	1	13	1	13	n	0.20	1	4	1	4	n	0.12	3	21	3	21	y	0.00	0	7	0	7	n	0.11	3	24	3	24	y	ENSMUSG00000053470.14	Kdm3a	chr6	protein_coding	lysine (K)-specific demethylase 3A
known_NIR_15958	chr6	71590979;71593854	71593802;71596942	-	71590979	71596942	cassetteExon	ENSMUST00000065509.11	known	0.29	2.0	5	2;2	5	n	0.38	2.5	4	3;2	4	n	0.20	8.5	33	10;7	33	y	0.30	3.5	8	3;4	8	y	0.23	4.5	15	2;7	15	y	0.00	0.0	3	0;0	3	n	0.12	1.5	11	2;1	11	n	0.22	2.0	7	2;2	7	y	0.10	1.0	9	0;2	9	n	0.33	3.5	7	4;3	7	y	0.12	1.0	7	0;2	7	n	0.18	3.0	14	2;4	14	y	ENSMUSG00000053470.14	Kdm3a	chr6	protein_coding	lysine (K)-specific demethylase 3A
known_NIR_15959	chr6	71828864	71829747	+	71828864	71829714	A3SS	ENSMUST00000064062.13	known	0.62	73	44	73	44	y	0.55	32	26	32	26	y	0.55	73	60	73	60	y	0.55	58	47	58	47	y	0.67	91	45	91	45	y	0.55	31	25	31	25	y	0.51	49	48	49	48	y	0.59	43	30	43	30	y	0.65	51	27	51	27	y	0.58	91	67	91	67	y	0.64	71	40	71	40	y	0.64	96	55	96	55	y	ENSMUSG00000052337.16	Immt	chr6	protein_coding	inner membrane protein, mitochondrial
known_NIR_15960	chr6	71828864	71829750	+	71828864	71829714	A3SS	ENSMUST00000064062.13	known	0.24	14	44	14	44	y	0.32	12	26	12	26	y	0.29	24	60	24	60	y	0.36	26	47	26	47	y	0.36	25	45	25	45	y	0.36	14	25	14	25	y	0.25	16	48	16	48	y	0.27	11	30	11	30	y	0.37	16	27	16	27	y	0.31	30	67	30	67	y	0.27	15	40	15	40	y	0.25	18	55	18	55	y	ENSMUSG00000052337.16	Immt	chr6	protein_coding	inner membrane protein, mitochondrial
known_NIR_15961	chr6	71828864	71829750	+	71828864	71829747	A3SS	ENSMUST00000167244.2	known	0.16	14	73	14	73	y	0.27	12	32	12	32	y	0.25	24	73	24	73	y	0.31	26	58	26	58	y	0.22	25	91	25	91	y	0.31	14	31	14	31	y	0.25	16	49	16	49	y	0.20	11	43	11	43	y	0.24	16	51	16	51	y	0.25	30	91	30	91	y	0.17	15	71	15	71	y	0.16	18	96	18	96	y	ENSMUSG00000052337.16	Immt	chr6	protein_coding	inner membrane protein, mitochondrial
known_NIR_15962	chr6	71828864	71833896	+	71828864	71829747	3pMXE	ENSMUST00000167244.2	known	0.08	6	73	6	73	y	0.00	0	32	0	32	n	0.04	3	73	3	73	y	0.03	2	58	2	58	y	0.03	3	91	3	91	y	0.03	1	31	1	31	n	0.48	46	49	46	49	y	0.00	0	43	0	43	n	0.00	0	51	0	51	n	0.03	3	91	3	91	y	0.05	4	71	4	71	y	0.06	6	96	6	96	y	ENSMUSG00000052337.16	Immt	chr6	protein_coding	inner membrane protein, mitochondrial
known_NIR_15963	chr6	71828864;71829851	71829714;71833896	+	71828864	71833896	cassetteExon	ENSMUST00000166975.8	known	0.94	87.0	6	44;130	6	y	1.00	48.0	0	26;70	0	n	0.97	102.0	3	60;144	3	y	0.98	102.5	2	47;158	2	y	0.97	109.0	3	45;173	3	y	0.98	42.5	1	25;60	1	n	0.65	87.0	46	48;126	46	y	1.00	49.0	0	30;68	0	n	1.00	55.5	0	27;84	0	n	0.97	116.0	3	67;165	3	y	0.95	69.5	4	40;99	4	y	0.94	94.5	6	55;134	6	y	ENSMUSG00000052337.16	Immt	chr6	protein_coding	inner membrane protein, mitochondrial
known_NIR_15964	chr6	71828864;71829851	71829747;71833896	+	71828864	71833896	cassetteExon	ENSMUST00000166975.8	known	0.94	101.5	6	73;130	6	y	1.00	51.0	0	32;70	0	n	0.97	108.5	3	73;144	3	y	0.98	108.0	2	58;158	2	y	0.98	132.0	3	91;173	3	y	0.98	45.5	1	31;60	1	n	0.66	87.5	46	49;126	46	y	1.00	55.5	0	43;68	0	n	1.00	67.5	0	51;84	0	n	0.98	128.0	3	91;165	3	y	0.96	85.0	4	71;99	4	y	0.95	115.0	6	96;134	6	y	ENSMUSG00000052337.16	Immt	chr6	protein_coding	inner membrane protein, mitochondrial
known_NIR_15965	chr6	71828864;71829851	71829750;71833896	+	71828864	71833896	cassetteExon	ENSMUST00000166975.8	known	0.92	72.0	6	14;130	6	y	1.00	41.0	0	12;70	0	n	0.97	84.0	3	24;144	3	y	0.98	92.0	2	26;158	2	y	0.97	99.0	3	25;173	3	y	0.97	37.0	1	14;60	1	n	0.61	71.0	46	16;126	46	y	1.00	39.5	0	11;68	0	n	1.00	50.0	0	16;84	0	n	0.97	97.5	3	30;165	3	y	0.93	57.0	4	15;99	4	y	0.93	76.0	6	18;134	6	y	ENSMUSG00000052337.16	Immt	chr6	protein_coding	inner membrane protein, mitochondrial
known_NIR_15966	chr6	71829851	71833896	+	71829851;71830252	71830157;71833896	ES	ENSMUST00000064062.13	known	0.87	130	19.5	130	15;24	y	0.80	70	17.0	70	10;24	y	0.82	144	31.5	144	28;35	y	0.86	158	25.5	158	24;27	y	0.84	173	33.5	173	24;43	y	0.71	60	24.5	60	25;24	y	0.80	126	32.0	126	23;41	y	0.72	68	26.0	68	24;28	y	0.80	84	20.5	84	16;25	y	0.83	165	33.0	165	32;34	y	0.86	99	16.0	99	13;19	y	0.85	134	23.0	134	19;27	y	ENSMUSG00000052337.16	Immt	chr6	protein_coding	inner membrane protein, mitochondrial
known_NIR_15967	chr6	71830252	71833896	+	71828864	71833896	A5SS	ENSMUST00000166975.8	known	0.80	24	6	24	6	y	1.00	24	0	24	0	n	0.92	35	3	35	3	y	0.93	27	2	27	2	y	0.93	43	3	43	3	y	0.96	24	1	24	1	n	0.47	41	46	41	46	y	1.00	28	0	28	0	n	1.00	25	0	25	0	n	0.92	34	3	34	3	y	0.83	19	4	19	4	y	0.82	27	6	27	6	y	ENSMUSG00000052337.16	Immt	chr6	protein_coding	inner membrane protein, mitochondrial
known_NIR_15968	chr6	71840254	71845564	+	71840254;71843724	71843710;71845564	ES	ENSMUST00000064062.13	known	0.08	14	164.5	14	164;165	y	0.08	12	139.0	12	130;148	y	0.16	32	166.0	32	162;170	y	0.08	15	183.0	15	185;181	y	0.13	34	226.5	34	222;231	y	0.10	11	99.0	11	96;102	y	0.09	25	266.5	25	255;278	y	0.11	13	103.5	13	97;110	y	0.09	16	165.5	16	161;170	y	0.05	16	276.0	16	269;283	y	0.05	10	212.0	10	210;214	y	0.05	11	207.5	11	198;217	y	ENSMUSG00000052337.16	Immt	chr6	protein_coding	inner membrane protein, mitochondrial
known_NIR_15969	chr6	71848542	71851301	+	71848542;71849878	71849778;71851301	ES	ENSMUST00000166975.8	known	0.04	4	99.0	4	198;0	n	0.00	0	87.5	0	175;0	n	0.04	5	119.5	5	232;7	y	0.02	3	125.5	3	244;7	y	0.02	3	118.0	3	232;4	y	0.02	1	62.5	1	125;0	n	0.02	3	150.5	3	289;12	y	0.03	2	67.5	2	131;4	y	0.02	2	96.0	2	186;6	y	0.03	5	155.5	5	304;7	y	0.07	8	115.0	8	230;0	n	0.04	6	145.0	6	283;7	y	ENSMUSG00000052337.16	Immt	chr6	protein_coding	inner membrane protein, mitochondrial
known_NIR_15970	chr6	71848542	71851301	+	71848542;71849907	71849778;71851301	ES	ENSMUST00000064062.13	known	0.02	4	213.0	4	198;228	y	0.00	0	183.0	0	175;191	n	0.02	5	233.5	5	232;235	y	0.01	3	241.0	3	244;238	y	0.01	3	253.0	3	232;274	y	0.01	1	137.5	1	125;150	n	0.01	3	289.5	3	289;290	y	0.01	2	135.0	2	131;139	y	0.01	2	195.0	2	186;204	y	0.02	5	307.0	5	304;310	y	0.03	8	239.5	8	230;249	y	0.02	6	274.0	6	283;265	y	ENSMUSG00000052337.16	Immt	chr6	protein_coding	inner membrane protein, mitochondrial
known_NIR_15971	chr6	71849878	71851301	+	71849907	71851301	A5SS	ENSMUST00000064062.13	known	0.00	0	228	0	228	n	0.00	0	191	0	191	n	0.03	7	235	7	235	y	0.03	7	238	7	238	y	0.01	4	274	4	274	y	0.00	0	150	0	150	n	0.04	12	290	12	290	y	0.03	4	139	4	139	y	0.03	6	204	6	204	y	0.02	7	310	7	310	y	0.00	0	249	0	249	n	0.03	7	265	7	265	y	ENSMUSG00000052337.16	Immt	chr6	protein_coding	inner membrane protein, mitochondrial
known_NIR_15972	chr6	71860586	71861524	-	71860576	71861524	A3SS	ENSMUST00000082094.5	known	0.07	5	67	5	67	y	0.06	3	51	3	51	y	0.10	6	54	6	54	y	0.03	2	67	2	67	y	0.04	3	80	3	80	y	0.04	1	24	1	24	n	0.04	4	92	4	92	y	0.00	0	30	0	30	n	0.00	0	59	0	59	n	0.00	0	76	0	76	n	0.03	3	92	3	92	y	0.05	4	83	4	83	y	ENSMUSG00000063884.7	Ptcd3	chr6	protein_coding	pentatricopeptide repeat domain 3
known_NIR_15973	chr6	71871356	71872889	-	71871356	71871805	5pMXE	ENSMUST00000206631.2	known	0.00	0	41	0	41	n	0.00	0	37	0	37	n	0.03	1	33	1	33	n	0.02	1	52	1	52	n	0.00	0	61	0	61	n	0.00	0	20	0	20	n	0.02	1	49	1	49	n	0.00	0	24	0	24	n	0.00	0	51	0	51	n	0.04	2	43	2	43	y	0.00	0	38	0	38	n	0.00	0	57	0	57	n	ENSMUSG00000063884.7	Ptcd3	chr6	protein_coding	pentatricopeptide repeat domain 3
known_NIR_15974	chr6	71871356	71872889	-	71871356;71871865	71871805;71872889	ES	ENSMUST00000082094.5	known	0.00	0	43.0	0	41;45	n	0.00	0	36.5	0	37;36	n	0.03	1	35.5	1	33;38	n	0.02	1	53.0	1	52;54	n	0.00	0	60.0	0	61;59	n	0.00	0	24.5	0	20;29	n	0.02	1	54.5	1	49;60	n	0.00	0	26.0	0	24;28	n	0.00	0	55.0	0	51;59	n	0.04	2	48.5	2	43;54	y	0.00	0	46.0	0	38;54	n	0.00	0	70.5	0	57;84	n	ENSMUSG00000063884.7	Ptcd3	chr6	protein_coding	pentatricopeptide repeat domain 3
known_NIR_15975	chr6	71882127	71884778	-	71882127;71884673	71884637;71884778	ES	ENSMUST00000082094.5	known	0.00	0	26.0	0	29;23	n	0.00	0	17.0	0	16;18	n	0.10	2	19.0	2	19;19	y	0.00	0	38.5	0	41;36	n	0.00	0	38.5	0	36;41	n	0.00	0	11.0	0	13;9	n	0.00	0	18.0	0	16;20	n	0.00	0	17.5	0	23;12	n	0.03	1	30.0	1	33;27	n	0.00	0	35.5	0	35;36	n	0.00	0	21.5	0	23;20	n	0.00	0	41.0	0	47;35	n	ENSMUSG00000063884.7	Ptcd3	chr6	protein_coding	pentatricopeptide repeat domain 3
known_NIR_15976	chr6	71889657	71889860	+	71886223	71889860	A5SS	ENSMUST00000206556.2	known	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.13	2	13	2	13	y	0.00	0	14	0	14	n	0.00	0	14	0	14	n	0.00	0	19	0	19	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.00	0	12	0	12	n	ENSMUSG00000049553.12	Polr1a	chr6	protein_coding	polymerase (RNA) I polypeptide A
known_NIR_15977	chr6	72074978	72105248	+	72074766	72105248	A5SS	ENSMUST00000069994.11	known	0.06	3	45	3	45	y	0.04	2	48	2	48	y	0.11	8	62	8	62	y	0.09	4	41	4	41	y	0.12	10	71	10	71	y	0.04	2	46	2	46	y	0.16	6	31	6	31	y	0.02	1	40	1	40	n	0.07	2	28	2	28	y	0.09	4	39	4	39	y	0.07	3	39	3	39	y	0.07	3	41	3	41	y	ENSMUSG00000056091.13	St3gal5	chr6	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 5
known_NIR_15978	chr6	72092363	72105248	+	72074766	72105248	A5SS	ENSMUST00000069994.11	known	0.84	234	45	234	45	y	0.84	259	48	259	48	y	0.89	491	62	491	62	y	0.81	176	41	176	41	y	0.85	407	71	407	71	y	0.93	594	46	594	46	y	0.95	535	31	535	31	y	0.91	399	40	399	40	y	0.73	77	28	77	28	y	0.86	236	39	236	39	y	0.79	150	39	150	39	y	0.71	102	41	102	41	y	ENSMUSG00000056091.13	St3gal5	chr6	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 5
known_NIR_15979	chr6	72092363	72105248	+	72074978	72105248	A5SS	ENSMUST00000114112.4	known	0.99	234	3	234	3	y	0.99	259	2	259	2	y	0.98	491	8	491	8	y	0.98	176	4	176	4	y	0.98	407	10	407	10	y	1.00	594	2	594	2	y	0.99	535	6	535	6	y	1.00	399	1	399	1	n	0.97	77	2	77	2	y	0.98	236	4	236	4	y	0.98	150	3	150	3	y	0.97	102	3	102	3	y	ENSMUSG00000056091.13	St3gal5	chr6	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 5
known_NIR_15980	chr6	72200917	72211378	-	72200917;72204242	72204091;72211378	ES	ENSMUST00000206425.2	known	0.95	39	2.0	39	3;1	n	0.95	67	3.5	67	6;1	n	0.85	76	13.5	76	27;0	n	0.94	59	3.5	59	6;1	n	0.91	53	5.0	53	10;0	n	0.74	17	6.0	17	12;0	n	0.94	45	3.0	45	6;0	n	0.85	14	2.5	14	5;0	n	0.94	32	2.0	32	4;0	n	0.96	36	1.5	36	2;1	n	0.97	76	2.0	76	4;0	n	0.91	36	3.5	36	5;2	y	ENSMUSG00000037621.9	Atoh8	chr6	protein_coding	atonal bHLH transcription factor 8
known_NIR_15981	chr6	72333295	72334033	+	72333295;72333752	72333705;72334033	ES	ENSMUST00000069695.9	known	0.00	0	371.5	0	420;323	n	0.00	1	316.5	1	322;311	n	0.00	1	225.0	1	256;194	n	0.01	2	316.0	2	330;302	y	0.00	2	487.5	2	503;472	y	0.02	3	166.0	3	193;139	y	0.00	1	377.5	1	397;358	n	0.00	1	244.0	1	279;209	n	0.00	0	286.5	0	305;268	n	0.01	4	426.0	4	449;403	y	0.00	1	340.5	1	351;330	n	0.00	0	405.5	0	442;369	n	ENSMUSG00000055912.9	Tmem150a	chr6	protein_coding	transmembrane protein 150A
known_NIR_15982	chr6	72337932	72338105	-	72337932	72338100	A5SS	ENSMUST00000069595.13	known	0.02	7	412	7	412	y	0.00	1	299	1	299	n	0.02	8	428	8	428	y	0.01	5	408	5	408	y	0.01	6	614	6	614	y	0.01	4	336	4	336	y	0.02	8	430	8	430	y	0.02	7	341	7	341	y	0.02	6	327	6	327	y	0.00	2	471	2	471	y	0.02	9	418	9	418	y	0.00	2	415	2	415	y	ENSMUSG00000055850.13	Rnf181	chr6	protein_coding	ring finger protein 181
known_NIR_15983	chr6	72337996	72338105	-	72337932	72338105	A3SS	ENSMUST00000129233.8	known	0.56	9	7	9	7	y	0.88	7	1	7	1	n	0.58	11	8	11	8	y	0.38	3	5	3	5	n	0.50	6	6	6	6	y	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.53	8	7	8	7	y	0.40	4	6	4	6	y	0.78	7	2	7	2	n	0.40	6	9	6	9	y	0.00	0	2	0	2	n	ENSMUSG00000055850.13	Rnf181	chr6	protein_coding	ring finger protein 181
known_NIR_15984	chr6	72338174	72338395	-	72338209	72338395	A3SS	ENSMUST00000069580.12	known	0.00	0	295	0	295	n	0.00	0	244	0	244	n	0.00	0	325	0	325	n	0.00	0	263	0	263	n	0.00	0	409	0	409	n	0.03	8	245	8	245	y	0.00	0	331	0	331	n	0.04	9	244	9	244	y	0.00	0	302	0	302	n	0.00	0	358	0	358	n	0.00	0	350	0	350	n	0.00	0	346	0	346	n	ENSMUSG00000055850.13	Rnf181	chr6	protein_coding	ring finger protein 181
known_NIR_15985	chr6	72338209	72338295	-	72338209	72338395	A5SS	ENSMUST00000069580.12	known	0.00	0	295	0	295	n	0.00	0	244	0	244	n	0.01	4	325	4	325	y	0.00	0	263	0	263	n	0.00	2	409	2	409	y	0.00	0	245	0	245	n	0.00	1	331	1	331	n	0.00	0	244	0	244	n	0.00	1	302	1	302	n	0.01	3	358	3	358	y	0.01	3	350	3	350	y	0.00	0	346	0	346	n	ENSMUSG00000055850.13	Rnf181	chr6	protein_coding	ring finger protein 181
known_NIR_15986	chr6	72338209	72338395	-	72338209	72339300	A5SS	ENSMUST00000069595.13	known	1.00	295	0	295	0	n	1.00	244	0	244	0	n	0.99	325	2	325	2	y	1.00	263	0	263	0	n	1.00	409	0	409	0	n	1.00	245	1	245	1	n	1.00	331	0	331	0	n	1.00	244	0	244	0	n	1.00	302	0	302	0	n	1.00	358	0	358	0	n	1.00	350	0	350	0	n	1.00	346	0	346	0	n	ENSMUSG00000055850.13	Rnf181	chr6	protein_coding	ring finger protein 181
known_NIR_15987	chr6	72338209	72339224	-	72338209	72338395	A5SS&ES	ENSMUST00000154098.3	known	0.00	0	295	0	295	n	0.00	0	244	0	244	n	0.00	0	325	0	325	n	0.00	0	263	0	263	n	0.01	4	409	4	409	y	0.00	1	245	1	245	n	0.00	0	331	0	331	n	0.01	2	244	2	244	y	0.00	0	302	0	302	n	0.00	1	358	1	358	n	0.00	1	350	1	350	n	0.00	0	346	0	346	n	ENSMUSG00000055850.13	Rnf181	chr6	protein_coding	ring finger protein 181
known_NIR_15988	chr6	72338209	72339224	-	72338209;72338522	72338395;72339224	ES	ENSMUST00000069580.12	known	0.00	0	242.5	0	295;190	n	0.00	0	191.0	0	244;138	n	0.00	0	257.5	0	325;190	n	0.00	0	235.5	0	263;208	n	0.01	4	333.0	4	409;257	y	0.00	1	199.5	1	245;154	n	0.00	0	282.0	0	331;233	n	0.01	2	211.5	2	244;179	y	0.00	0	239.5	0	302;177	n	0.00	1	305.0	1	358;252	n	0.00	1	275.0	1	350;200	n	0.00	0	274.5	0	346;203	n	ENSMUSG00000055850.13	Rnf181	chr6	protein_coding	ring finger protein 181
known_NIR_15989	chr6	72338209	72339259	-	72338209	72338395	A5SS&ES	ENSMUST00000069580.12	known	0.00	0	295	0	295	n	0.00	0	244	0	244	n	0.00	1	325	1	325	n	0.01	2	263	2	263	y	0.00	0	409	0	409	n	0.02	4	245	4	245	y	0.01	2	331	2	331	y	0.00	0	244	0	244	n	0.00	0	302	0	302	n	0.00	1	358	1	358	n	0.00	1	350	1	350	n	0.00	0	346	0	346	n	ENSMUSG00000055850.13	Rnf181	chr6	protein_coding	ring finger protein 181
known_NIR_15990	chr6	72338209	72339259	-	72338209;72338522	72338395;72339259	ES	ENSMUST00000129233.8	known	0.00	0	155.5	0	295;16	n	0.00	0	130.0	0	244;16	n	0.01	1	176.0	1	325;27	n	0.01	2	143.0	2	263;23	y	0.00	0	235.0	0	409;61	n	0.03	4	136.5	4	245;28	y	0.01	2	189.5	2	331;48	y	0.00	0	137.0	0	244;30	n	0.00	0	162.5	0	302;23	n	0.00	1	203.5	1	358;49	n	0.01	1	191.5	1	350;33	n	0.00	0	189.0	0	346;32	n	ENSMUSG00000055850.13	Rnf181	chr6	protein_coding	ring finger protein 181
known_NIR_15991	chr6	72338209	72339259	-	72338522	72339259	A3SS&ES	ENSMUST00000149296.8	known	0.00	0	16	0	16	n	0.00	0	16	0	16	n	0.04	1	27	1	27	n	0.08	2	23	2	23	y	0.00	0	61	0	61	n	0.12	4	28	4	28	y	0.04	2	48	2	48	y	0.00	0	30	0	30	n	0.00	0	23	0	23	n	0.02	1	49	1	49	n	0.03	1	33	1	33	n	0.00	0	32	0	32	n	ENSMUSG00000055850.13	Rnf181	chr6	protein_coding	ring finger protein 181
known_NIR_15992	chr6	72338209;72338522	72338295;72339224	-	72338209	72339224	cassetteExon	ENSMUST00000151063.2	known	1.00	95.0	0	0;190	0	n	1.00	69.0	0	0;138	0	n	1.00	97.0	0	4;190	0	n	1.00	104.0	0	0;208	0	n	0.97	129.5	4	2;257	4	y	0.99	77.0	1	0;154	1	n	1.00	117.0	0	1;233	0	n	0.98	89.5	2	0;179	2	n	1.00	89.0	0	1;177	0	n	0.99	127.5	1	3;252	1	n	0.99	101.5	1	3;200	1	n	1.00	101.5	0	0;203	0	n	ENSMUSG00000055850.13	Rnf181	chr6	protein_coding	ring finger protein 181
known_NIR_15993	chr6	72338209;72338522	72338395;72339259	-	72338209;72338353	72338295;72339259	MXE	ENSMUST00000125554.8	known	1.00	155.5	0.0	295;16	0;0	n	1.00	130.0	0.0	244;16	0;0	n	0.98	176.0	3.0	325;27	4;2	y	1.00	143.0	0.0	263;23	0;0	n	1.00	235.0	1.0	409;61	2;0	n	1.00	136.5	0.0	245;28	0;0	n	1.00	189.5	0.5	331;48	1;0	n	1.00	137.0	0.0	244;30	0;0	n	1.00	162.5	0.5	302;23	1;0	n	0.99	203.5	2.5	358;49	3;2	y	0.99	191.5	1.5	350;33	3;0	n	1.00	189.0	0.0	346;32	0;0	n	ENSMUSG00000055850.13	Rnf181	chr6	protein_coding	ring finger protein 181
known_NIR_15994	chr6	72338353	72339259	-	72338522	72339259	A3SS&ES	ENSMUST00000149296.8	known	0.00	0	16	0	16	n	0.00	0	16	0	16	n	0.07	2	27	2	27	y	0.00	0	23	0	23	n	0.00	0	61	0	61	n	0.00	0	28	0	28	n	0.00	0	48	0	48	n	0.00	0	30	0	30	n	0.00	0	23	0	23	n	0.04	2	49	2	49	y	0.00	0	33	0	33	n	0.00	0	32	0	32	n	ENSMUSG00000055850.13	Rnf181	chr6	protein_coding	ring finger protein 181
known_NIR_15995	chr6	72338522	72339259	-	72338522	72339224	A5SS	ENSMUST00000069580.12	known	0.08	16	190	16	190	y	0.10	16	138	16	138	y	0.12	27	190	27	190	y	0.10	23	208	23	208	y	0.19	61	257	61	257	y	0.15	28	154	28	154	y	0.17	48	233	48	233	y	0.14	30	179	30	179	y	0.12	23	177	23	177	y	0.16	49	252	49	252	y	0.14	33	200	33	200	y	0.14	32	203	32	203	y	ENSMUSG00000055850.13	Rnf181	chr6	protein_coding	ring finger protein 181
known_NIR_15996	chr6	72394996	72395219	+	72394996	72395284	A3SS	ENSMUST00000065906.9	known	0.05	4	83	4	83	y	0.10	5	45	5	45	y	0.07	6	74	6	74	y	0.05	6	113	6	113	y	0.02	3	148	3	148	y	0.04	2	47	2	47	y	0.03	3	103	3	103	y	0.01	1	81	1	81	n	0.03	2	64	2	64	y	0.02	2	110	2	110	y	0.00	0	66	0	66	n	0.05	4	69	4	69	y	ENSMUSG00000053460.9	Ggcx	chr6	protein_coding	gamma-glutamyl carboxylase
known_NIR_15997	chr6	72395449;72396249	72396000;72399399	+	72395449	72399399	cassetteExon	ENSMUST00000065906.9	known	0.04	4.0	86	5;3	86	y	0.05	2.5	46	2;3	46	y	0.07	4.5	60	2;7	60	y	0.03	3.5	102	5;2	102	y	0.04	5.0	137	3;7	137	y	0.07	4.0	55	2;6	55	y	0.05	5.5	98	7;4	98	y	0.02	2.0	81	2;2	81	y	0.07	3.0	39	3;3	39	y	0.04	3.5	96	2;5	96	y	0.04	3.5	86	4;3	86	y	0.05	5.0	91	1;9	91	n	ENSMUSG00000053460.9	Ggcx	chr6	protein_coding	gamma-glutamyl carboxylase
known_NIR_15998	chr6	72404156	72405441	+	72404156;72404963	72404881;72405441	ES	ENSMUST00000207012.2	known	0.11	6	47.5	6	95;0	n	0.19	7	30.5	7	61;0	n	0.09	4	38.5	4	77;0	n	0.06	4	62.0	4	124;0	n	0.03	2	73.0	2	146;0	n	0.12	5	37.0	5	74;0	n	0.05	3	61.5	3	119;4	y	0.16	9	48.0	9	96;0	n	0.09	4	39.0	4	78;0	n	0.06	3	51.5	3	103;0	n	0.06	3	49.0	3	98;0	n	0.10	5	46.0	5	92;0	n	ENSMUSG00000053460.9	Ggcx	chr6	protein_coding	gamma-glutamyl carboxylase
known_NIR_15999	chr6	72404156	72405441	+	72404156;72405032	72404881;72405441	ES	ENSMUST00000065906.9	known	0.06	6	87.5	6	95;80	y	0.08	7	79.0	7	61;97	y	0.05	4	79.0	4	77;81	y	0.03	4	136.0	4	124;148	y	0.01	2	150.0	2	146;154	y	0.06	5	80.5	5	74;87	y	0.02	3	132.0	3	119;145	y	0.08	9	103.0	9	96;110	y	0.04	4	88.0	4	78;98	y	0.02	3	126.5	3	103;150	y	0.03	3	106.0	3	98;114	y	0.05	5	102.0	5	92;112	y	ENSMUSG00000053460.9	Ggcx	chr6	protein_coding	gamma-glutamyl carboxylase
known_NIR_16000	chr6	72404963	72405441	+	72405032	72405441	A5SS	ENSMUST00000065906.9	known	0.00	0	80	0	80	n	0.00	0	97	0	97	n	0.00	0	81	0	81	n	0.00	0	148	0	148	n	0.00	0	154	0	154	n	0.00	0	87	0	87	n	0.03	4	145	4	145	y	0.00	0	110	0	110	n	0.00	0	98	0	98	n	0.00	0	150	0	150	n	0.00	0	114	0	114	n	0.00	0	112	0	112	n	ENSMUSG00000053460.9	Ggcx	chr6	protein_coding	gamma-glutamyl carboxylase
known_NIR_16001	chr6	72411378	72411964	-	72411722	72411964	3pMXE	ENSMUST00000206692.2	known	0.94	81	5	81	5	y	1.00	86	0	86	0	n	1.00	167	0	167	0	n	1.00	104	0	104	0	n	1.00	109	0	109	0	n	1.00	56	0	56	0	n	1.00	155	0	155	0	n	1.00	68	0	68	0	n	1.00	65	0	65	0	n	1.00	142	0	142	0	n	0.98	84	2	84	2	y	0.98	83	2	83	2	y	ENSMUSG00000053907.11	Mat2a	chr6	protein_coding	methionine adenosyltransferase II, alpha
known_NIR_16002	chr6	72411378;72411722	72411642;72411964	-	72411378	72411964	cassetteExon	ENSMUST00000059472.10	known	0.03	2.5	81	0;5	81	n	0.00	0.0	86	0;0	86	n	0.00	0.0	167	0;0	167	n	0.00	0.0	104	0;0	104	n	0.00	0.0	109	0;0	109	n	0.00	0.0	56	0;0	56	n	0.00	0.0	155	0;0	155	n	0.00	0.0	68	0;0	68	n	0.00	0.0	65	0;0	65	n	0.00	0.0	142	0;0	142	n	0.01	1.0	84	0;2	84	n	0.02	2.0	83	2;2	83	y	ENSMUSG00000053907.11	Mat2a	chr6	protein_coding	methionine adenosyltransferase II, alpha
known_NIR_16003	chr6	72526484	72532256	+	72521449	72532256	A5SS	ENSMUST00000071044.13	known	1.00	3	0	3	0	n	0.50	1	1	1	1	n	0.67	8	4	8	4	y	0.67	2	1	2	1	n	0.67	6	3	6	3	n	0.50	2	2	2	2	n	0.83	15	3	15	3	y	0.25	1	3	1	3	n	1.00	2	0	2	0	n	1.00	3	0	3	0	n	0.25	1	3	1	3	n	0.25	1	3	1	3	n	ENSMUSG00000056737.15	Capg	chr6	protein_coding	capping protein (actin filament), gelsolin-like
known_NIR_16004	chr6	72572003	72575305	-	72572003;72573449	72573419;72575305	ES	ENSMUST00000114069.8	known	0.41	10	14.5	10	18;11	y	0.70	19	8.0	19	12;4	y	0.53	15	13.5	15	24;3	y	0.33	5	10.0	5	14;6	y	0.29	13	32.0	13	38;26	y	0.44	11	14.0	11	20;8	y	0.34	18	35.0	18	45;25	y	0.64	23	13.0	23	19;7	y	0.57	12	9.0	12	11;7	y	0.50	18	18.0	18	27;9	y	0.40	6	9.0	6	13;5	y	0.58	19	13.5	19	20;7	y	ENSMUSG00000056698.12	Elmod3	chr6	protein_coding	ELMO/CED-12 domain containing 3
known_NIR_16005	chr6	72573449	72575305	-	72574628	72575305	A3SS&ES	ENSMUST00000148108.8	known	1.00	11	0	11	0	n	0.80	4	1	4	1	n	0.33	3	6	3	6	n	0.43	6	8	6	8	y	0.93	26	2	26	2	y	0.80	8	2	8	2	y	0.83	25	5	25	5	y	0.78	7	2	7	2	n	0.88	7	1	7	1	n	0.82	9	2	9	2	y	0.71	5	2	5	2	n	0.58	7	5	7	5	y	ENSMUSG00000056698.12	Elmod3	chr6	protein_coding	ELMO/CED-12 domain containing 3
known_NIR_16006	chr6	72573449;72574628	72574607;72575305	-	72573449	72575305	cassetteExon	ENSMUST00000114069.8	known	0.08	1.0	11	2;0	11	n	0.27	1.5	4	2;1	4	n	0.70	7.0	3	8;6	3	y	0.52	6.5	6	5;8	6	y	0.10	3.0	26	4;2	26	y	0.24	2.5	8	3;2	8	y	0.21	6.5	25	8;5	25	y	0.30	3.0	7	4;2	7	y	0.18	1.5	7	2;1	7	n	0.18	2.0	9	2;2	9	y	0.33	2.5	5	3;2	5	y	0.44	5.5	7	6;5	7	y	ENSMUSG00000056698.12	Elmod3	chr6	protein_coding	ELMO/CED-12 domain containing 3
known_NIR_16007	chr6	72574628	72575305	-	72572003	72575305	A3SS	ENSMUST00000070990.8	known	0.00	0	10	0	10	n	0.05	1	19	1	19	n	0.29	6	15	6	15	y	0.62	8	5	8	5	y	0.13	2	13	2	13	y	0.15	2	11	2	11	y	0.22	5	18	5	18	y	0.08	2	23	2	23	y	0.08	1	12	1	12	n	0.10	2	18	2	18	y	0.25	2	6	2	6	n	0.21	5	19	5	19	y	ENSMUSG00000056698.12	Elmod3	chr6	protein_coding	ELMO/CED-12 domain containing 3
known_NIR_16008	chr6	72581687	72581849	+	72580834	72581849	A5SS	ENSMUST00000070597.13	known	0.00	0	859	0	859	n	0.00	0	908	0	908	n	0.02	19	828	19	828	y	0.00	0	989	0	989	n	0.00	0	1558	0	1558	n	0.00	0	405	0	405	n	0.00	0	2119	0	2119	n	0.00	0	596	0	596	n	0.00	0	808	0	808	n	0.00	0	2112	0	2112	n	0.00	0	1223	0	1223	n	0.00	0	864	0	864	n	ENSMUSG00000056666.14	Retsat	chr6	protein_coding	retinol saturase (all trans retinol 13,14 reductase)
known_NIR_16009	chr6	72583722	72584225	+	72583722	72583857	3pMXE	ENSMUST00000129071.2	known	0.00	0	1096	0	1096	n	0.00	0	1373	0	1373	n	0.01	7	888	7	888	y	0.00	0	1036	0	1036	n	0.01	12	1788	12	1788	y	0.00	0	500	0	500	n	0.01	19	2559	19	2559	y	0.00	0	700	0	700	n	0.00	0	911	0	911	n	0.01	16	2624	16	2624	y	0.00	0	1656	0	1656	n	0.00	0	932	0	932	n	ENSMUSG00000056666.14	Retsat	chr6	protein_coding	retinol saturase (all trans retinol 13,14 reductase)
known_NIR_16010	chr6	72583722	72584225	+	72583722;72584016	72583857;72584225	ES	ENSMUST00000070597.13	known	0.00	0	1178.5	0	1096;1261	n	0.00	0	1452.0	0	1373;1531	n	0.01	7	936.0	7	888;984	y	0.00	0	1052.0	0	1036;1068	n	0.01	12	1815.5	12	1788;1843	y	0.00	0	479.5	0	500;459	n	0.01	19	2590.5	19	2559;2622	y	0.00	0	693.0	0	700;686	n	0.00	0	942.5	0	911;974	n	0.01	16	2609.5	16	2624;2595	y	0.00	0	1748.0	0	1656;1840	n	0.00	0	942.5	0	932;953	n	ENSMUSG00000056666.14	Retsat	chr6	protein_coding	retinol saturase (all trans retinol 13,14 reductase)
known_NIR_16011	chr6	72611215	72626103	-	72625825	72626103	3pMXE	ENSMUST00000182651.2	known	0.50	3	3	3	3	n	0.20	1	4	1	4	n	0.14	1	6	1	6	n	0.33	2	4	2	4	n	0.45	5	6	5	6	y	0.25	2	6	2	6	n	0.10	1	9	1	9	n	0.50	4	4	4	4	n	0.50	2	2	2	2	n	0.33	3	6	3	6	n	0.08	1	11	1	11	n	0.50	2	2	2	2	n	ENSMUSG00000055799.14	Tcf7l1	chr6	protein_coding	transcription factor 7 like 1 (T cell specific, HMG box)
known_NIR_16012	chr6	72611215;72625825	72625784;72626103	-	72611215	72626103	cassetteExon	ENSMUST00000069536.12	known	0.33	1.5	3	0;3	3	n	0.80	4.0	1	4;4	1	n	0.85	5.5	1	5;6	1	n	0.64	3.5	2	3;4	2	n	0.50	5.0	5	4;6	5	y	0.71	5.0	2	4;6	2	y	0.87	6.5	1	4;9	1	n	0.43	3.0	4	2;4	4	y	0.50	2.0	2	2;2	2	n	0.62	5.0	3	4;6	3	y	0.90	9.0	1	7;11	1	n	0.56	2.5	2	3;2	2	n	ENSMUSG00000055799.14	Tcf7l1	chr6	protein_coding	transcription factor 7 like 1 (T cell specific, HMG box)
known_NIR_16013	chr6	72626186	72647787	-	72626186	72765194	A5SS	ENSMUST00000069536.12	known	0.20	3	12	3	12	y	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.08	1	12	1	12	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	ENSMUSG00000055799.14	Tcf7l1	chr6	protein_coding	transcription factor 7 like 1 (T cell specific, HMG box)
known_NIR_16014	chr6	72825490	72826427	-	72825490	72835757	A5SS	ENSMUST00000203431.2	known	0.99	140	2	140	2	y	0.99	161	1	161	1	n	1.00	274	1	274	1	n	0.98	171	3	171	3	y	0.99	211	3	211	3	y	1.00	115	0	115	0	n	1.00	266	0	266	0	n	1.00	105	0	105	0	n	1.00	170	0	170	0	n	1.00	262	0	262	0	n	1.00	216	0	216	0	n	0.99	225	2	225	2	y	ENSMUSG00000055239.11	Kcmf1	chr6	protein_coding	potassium channel modulatory factor 1
known_NIR_16015	chr6	72827467	72835757	-	72825490	72835757	A3SS	ENSMUST00000203431.2	known	0.99	184	2	184	2	y	0.99	161	1	161	1	n	1.00	308	1	308	1	n	0.99	208	3	208	3	y	0.99	258	3	258	3	y	1.00	125	0	125	0	n	1.00	292	0	292	0	n	1.00	121	0	121	0	n	1.00	175	0	175	0	n	1.00	290	0	290	0	n	1.00	198	0	198	0	n	0.99	293	2	293	2	y	ENSMUSG00000055239.11	Kcmf1	chr6	protein_coding	potassium channel modulatory factor 1
known_NIR_16016	chr6	72827467	72838741	-	72827467;72835896	72835757;72838741	ES	ENSMUST00000068697.11	known	0.00	0	176.0	0	184;168	n	0.00	0	148.0	0	161;135	n	0.01	2	271.5	2	308;235	y	0.00	0	180.5	0	208;153	n	0.00	0	244.5	0	258;231	n	0.00	0	123.5	0	125;122	n	0.00	0	288.0	0	292;284	n	0.00	0	120.5	0	121;120	n	0.00	0	169.5	0	175;164	n	0.00	1	252.0	1	290;214	n	0.00	0	190.5	0	198;183	n	0.00	1	272.0	1	293;251	n	ENSMUSG00000055239.11	Kcmf1	chr6	protein_coding	potassium channel modulatory factor 1
known_NIR_16017	chr6	72827467	72838741	-	72835896	72838741	A3SS&ES	ENSMUST00000206378.2	known	0.00	0	168	0	168	n	0.00	0	135	0	135	n	0.01	2	235	2	235	y	0.00	0	153	0	153	n	0.00	0	231	0	231	n	0.00	0	122	0	122	n	0.00	0	284	0	284	n	0.00	0	120	0	120	n	0.00	0	164	0	164	n	0.00	1	214	1	214	n	0.00	0	183	0	183	n	0.00	1	251	1	251	n	ENSMUSG00000055239.11	Kcmf1	chr6	protein_coding	potassium channel modulatory factor 1
known_NIR_16018	chr6	72838908	72875963	-	72838908	72876597	A5SS	ENSMUST00000068697.11	known	0.19	11	48	11	48	y	0.18	11	50	11	50	y	0.10	12	105	12	105	y	0.09	7	70	7	70	y	0.12	11	80	11	80	y	0.09	5	51	5	51	y	0.06	6	91	6	91	y	0.12	7	49	7	49	y	0.07	4	52	4	52	y	0.13	12	79	12	79	y	0.12	8	61	8	61	y	0.14	14	89	14	89	y	ENSMUSG00000055239.11	Kcmf1	chr6	protein_coding	potassium channel modulatory factor 1
known_NIR_16019	chr6	73233257	73252260	+	73233257	73237458	A3SS&ES	ENSMUST00000064740.9	known	0.01	4	411	4	411	y	0.00	0	300	0	300	n	0.02	7	284	7	284	y	0.00	0	462	0	462	n	0.01	6	500	6	500	y	0.01	2	174	2	174	y	0.01	3	532	3	532	y	0.02	6	240	6	240	y	0.01	5	398	5	398	y	0.01	6	649	6	649	y	0.01	7	508	7	508	y	0.02	11	553	11	553	y	ENSMUSG00000052738.15	Suclg1	chr6	protein_coding	succinate-CoA ligase, GDP-forming, alpha subunit
known_NIR_16020	chr6	78347921	78348183	+	78347893	78348183	A5SS	ENSMUST00000096904.6	known	0.00	0	72	0	72	n	0.00	0	14	0	14	n	0.01	12	1693	12	1693	y	0.00	0	16	0	16	n	0.01	4	653	4	653	y	0.01	5	799	5	799	y	0.01	6	585	6	585	y	0.01	6	699	6	699	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000071356.8	Reg3b	chr6	protein_coding	regenerating islet-derived 3 beta
known_NIR_16021	chr6	81909892	81912887	+	81909892	81910709	3pMXE	ENSMUST00000147673.2	known	0.60	3	2	3	2	n	1.00	3	0	3	0	n	0.67	6	3	6	3	n	0.75	6	2	6	2	n	0.71	5	2	5	2	n	0.80	4	1	4	1	n	0.40	2	3	2	3	n	0.88	7	1	7	1	n	0.30	3	7	3	7	y	0.00	0	2	0	2	n	1.00	3	0	3	0	n	0.50	1	1	1	1	n	ENSMUSG00000035125.11	Gcfc2	chr6	protein_coding	GC-rich sequence DNA binding factor 2
known_NIR_16022	chr6	81920522	81921388	+	81920522	81921302	A3SS	ENSMUST00000043195.11	known	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.14	1	6	1	6	n	0.56	5	4	5	4	n	0.42	5	7	5	7	y	0.00	0	3	0	3	n	0.43	6	8	6	8	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.29	2	5	2	5	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	ENSMUSG00000035125.11	Gcfc2	chr6	protein_coding	GC-rich sequence DNA binding factor 2
known_NIR_16023	chr6	82018882	82021296	+	82018882	82048036	A3SS	ENSMUST00000042974.15	known	0.01	1	103	1	103	n	0.01	1	106	1	106	n	0.02	2	84	2	84	y	0.00	0	117	0	117	n	0.01	1	124	1	124	n	0.00	0	16	0	16	n	0.00	0	141	0	141	n	0.00	0	46	0	46	n	0.05	4	76	4	76	y	0.00	0	195	0	195	n	0.02	2	97	2	97	y	0.01	2	138	2	138	y	ENSMUSG00000035104.15	Eva1a	chr6	protein_coding	eva-1 homolog A (C. elegans)
known_NIR_16024	chr6	82029427	82048036	+	82018882	82048036	A5SS	ENSMUST00000042974.15	known	0.03	3	103	3	103	y	0.06	7	106	7	106	y	0.08	7	84	7	84	y	0.08	10	117	10	117	y	0.11	16	124	16	124	y	0.50	16	16	16	16	y	0.06	9	141	9	141	y	0.15	8	46	8	46	y	0.05	4	76	4	76	y	0.05	11	195	11	195	y	0.07	7	97	7	97	y	0.05	7	138	7	138	y	ENSMUSG00000035104.15	Eva1a	chr6	protein_coding	eva-1 homolog A (C. elegans)
known_NIR_16025	chr6	82599106	82628418	-	82596119	82628418	A3SS	ENSMUST00000161309.8	known	0.00	0	15	0	15	n	0.00	0	26	0	26	n	0.00	0	35	0	35	n	0.00	0	14	0	14	n	0.08	2	24	2	24	y	0.00	0	21	0	21	n	0.00	0	27	0	27	n	0.05	1	19	1	19	n	0.00	0	23	0	23	n	0.00	0	18	0	18	n	0.00	0	19	0	19	n	0.00	0	21	0	21	n	ENSMUSG00000030042.16	Pole4	chr6	protein_coding	polymerase (DNA-directed), epsilon 4 (p12 subunit)
known_NIR_16026	chr6	82625017	82628418	-	82596119	82628418	A3SS	ENSMUST00000161309.8	known	0.92	170	15	170	15	y	0.87	167	26	167	26	y	0.90	325	35	325	35	y	0.89	112	14	112	14	y	0.91	247	24	247	24	y	0.92	231	21	231	21	y	0.90	246	27	246	27	y	0.91	192	19	192	19	y	0.81	100	23	100	23	y	0.90	160	18	160	18	y	0.87	125	19	125	19	y	0.87	144	21	144	21	y	ENSMUSG00000030042.16	Pole4	chr6	protein_coding	polymerase (DNA-directed), epsilon 4 (p12 subunit)
known_NIR_16027	chr6	82625017	82628418	-	82599106	82628418	A3SS	ENSMUST00000160281.8	known	1.00	170	0	170	0	n	1.00	167	0	167	0	n	1.00	325	0	325	0	n	1.00	112	0	112	0	n	0.99	247	2	247	2	y	1.00	231	0	231	0	n	1.00	246	0	246	0	n	0.99	192	1	192	1	n	1.00	100	0	100	0	n	1.00	160	0	160	0	n	1.00	125	0	125	0	n	1.00	144	0	144	0	n	ENSMUSG00000030042.16	Pole4	chr6	protein_coding	polymerase (DNA-directed), epsilon 4 (p12 subunit)
known_NIR_16028	chr6	82629148	82629366	-	82629148	82629460	A5SS	ENSMUST00000141138.8	known	1.00	3	0	3	0	n	0.14	1	6	1	6	n	0.92	11	1	11	1	n	1.00	1	0	1	0	n	0.79	11	3	11	3	y	0.64	9	5	9	5	y	0.86	12	2	12	2	y	0.62	5	3	5	3	n	1.00	2	0	2	0	n	0.60	6	4	6	4	y	0.67	2	1	2	1	n	0.57	4	3	4	3	n	ENSMUSG00000030042.16	Pole4	chr6	protein_coding	polymerase (DNA-directed), epsilon 4 (p12 subunit)
known_NIR_16029	chr6	82629148	82629366	-	82629148	82629605	A5SS	ENSMUST00000160281.8	known	0.02	3	183	3	183	y	0.01	1	176	1	176	n	0.03	11	385	11	385	y	0.01	1	167	1	167	n	0.04	11	281	11	281	y	0.03	9	261	9	261	y	0.04	12	282	12	282	y	0.02	5	201	5	201	y	0.02	2	130	2	130	y	0.03	6	221	6	221	y	0.01	2	161	2	161	y	0.02	4	187	4	187	y	ENSMUSG00000030042.16	Pole4	chr6	protein_coding	polymerase (DNA-directed), epsilon 4 (p12 subunit)
known_NIR_16030	chr6	82629148	82629460	-	82629148	82629605	A5SS	ENSMUST00000160281.8	known	0.00	0	183	0	183	n	0.03	6	176	6	176	y	0.00	1	385	1	385	n	0.00	0	167	0	167	n	0.01	3	281	3	281	y	0.02	5	261	5	261	y	0.01	2	282	2	282	y	0.01	3	201	3	201	y	0.00	0	130	0	130	n	0.02	4	221	4	221	y	0.01	1	161	1	161	n	0.02	3	187	3	187	y	ENSMUSG00000030042.16	Pole4	chr6	protein_coding	polymerase (DNA-directed), epsilon 4 (p12 subunit)
known_NIR_16031	chr6	8270581	8279277	+	8270581	8373906	A3SS	ENSMUST00000159335.8	known	0.00	0	34	0	34	n	0.00	0	32	0	32	n	0.00	0	33	0	33	n	0.00	0	30	0	30	n	0.03	1	37	1	37	n	0.03	1	36	1	36	n	0.03	1	39	1	39	n	0.00	0	27	0	27	n	0.04	1	23	1	23	n	0.05	2	42	2	42	y	0.00	0	32	0	32	n	0.00	0	38	0	38	n	ENSMUSG00000089862.9	Umad1	chr6	protein_coding	UMAP1-MVP12 associated (UMA) domain containing 1
known_NIR_16032	chr6	8270581	8426971	+	8270581;8373967	8373906;8426971	ES	ENSMUST00000159335.8	known	0.00	0	36.5	0	34;39	n	0.00	0	29.0	0	32;26	n	0.05	2	37.0	2	33;41	y	0.00	0	33.5	0	30;37	n	0.05	2	38.0	2	37;39	y	0.00	0	30.0	0	36;24	n	0.00	0	35.5	0	39;32	n	0.03	1	28.5	1	27;30	n	0.00	0	24.5	0	23;26	n	0.14	6	37.5	6	42;33	y	0.00	0	30.5	0	32;29	n	0.02	1	39.5	1	38;41	n	ENSMUSG00000089862.9	Umad1	chr6	protein_coding	UMAP1-MVP12 associated (UMA) domain containing 1
known_NIR_16033	chr6	83029523	83029982	-	83029523	83029679	A5SS&ES	ENSMUST00000113962.8	known	0.16	6	31	6	31	y	0.05	2	36	2	36	y	0.11	5	39	5	39	y	0.00	0	25	0	25	n	0.00	0	36	0	36	n	0.00	0	21	0	21	n	0.02	1	62	1	62	n	0.09	3	29	3	29	y	0.00	0	37	0	37	n	0.02	2	81	2	81	y	0.02	1	54	1	54	n	0.07	3	42	3	42	y	ENSMUSG00000068329.13	Htra2	chr6	protein_coding	HtrA serine peptidase 2
known_NIR_16034	chr6	83029523	83029982	-	83029523	83030019	A5SS	ENSMUST00000122955.8	known	1.00	6	0	6	0	n	1.00	2	0	2	0	n	0.50	5	5	5	5	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.60	3	2	3	2	n	0.00	0	2	0	2	n	0.33	2	4	2	4	n	0.33	1	2	1	2	n	0.75	3	1	3	1	n	ENSMUSG00000068329.13	Htra2	chr6	protein_coding	HtrA serine peptidase 2
known_NIR_16035	chr6	83029523	83030019	-	83029523	83029679	A5SS	ENSMUST00000144058.4	known	0.00	0	31	0	31	n	0.00	0	36	0	36	n	0.11	5	39	5	39	y	0.11	3	25	3	25	y	0.08	3	36	3	36	y	0.00	0	21	0	21	n	0.00	0	62	0	62	n	0.06	2	29	2	29	y	0.05	2	37	2	37	y	0.05	4	81	4	81	y	0.04	2	54	2	54	y	0.02	1	42	1	42	n	ENSMUSG00000068329.13	Htra2	chr6	protein_coding	HtrA serine peptidase 2
known_NIR_16036	chr6	83029523	83030019	-	83029523;83029784	83029679;83030019	ES	ENSMUST00000113962.8	known	0.00	0	36.0	0	31;41	n	0.00	0	36.5	0	36;37	n	0.14	5	30.5	5	39;22	y	0.09	3	30.5	3	25;36	y	0.08	3	34.5	3	36;33	y	0.00	0	20.5	0	21;20	n	0.00	0	56.0	0	62;50	n	0.07	2	25.5	2	29;22	y	0.05	2	35.5	2	37;34	y	0.05	4	74.0	4	81;67	y	0.04	2	51.5	2	54;49	y	0.02	1	40.0	1	42;38	n	ENSMUSG00000068329.13	Htra2	chr6	protein_coding	HtrA serine peptidase 2
known_NIR_16037	chr6	83029523;83029707	83029679;83030019	-	83029523	83030019	cassetteExon	ENSMUST00000122955.8	known	1.00	17.0	0	31;3	0	n	1.00	19.0	0	36;2	0	n	0.80	20.0	5	39;1	5	n	0.82	13.5	3	25;2	3	y	0.86	19.0	3	36;2	3	y	1.00	10.5	0	21;0	0	n	1.00	32.5	0	62;3	0	n	0.88	14.5	2	29;0	2	n	0.91	19.5	2	37;2	2	y	0.91	43.0	4	81;5	4	y	0.94	29.5	2	54;5	2	y	0.96	23.0	1	42;4	1	n	ENSMUSG00000068329.13	Htra2	chr6	protein_coding	HtrA serine peptidase 2
known_NIR_16038	chr6	83029707	83030019	-	83029784	83030019	A3SS	ENSMUST00000113962.8	known	0.07	3	41	3	41	y	0.05	2	37	2	37	y	0.04	1	22	1	22	n	0.05	2	36	2	36	y	0.06	2	33	2	33	y	0.00	0	20	0	20	n	0.06	3	50	3	50	y	0.00	0	22	0	22	n	0.06	2	34	2	34	y	0.07	5	67	5	67	y	0.09	5	49	5	49	y	0.10	4	38	4	38	y	ENSMUSG00000068329.13	Htra2	chr6	protein_coding	HtrA serine peptidase 2
known_NIR_16039	chr6	83030798	83031812	-	83030798	83030902	5pMXE	ENSMUST00000113962.8	known	0.00	0	35	0	35	n	0.00	0	33	0	33	n	0.02	1	43	1	43	n	0.03	1	36	1	36	n	0.00	0	46	0	46	n	0.00	0	28	0	28	n	0.00	0	64	0	64	n	0.00	0	38	0	38	n	0.00	0	34	0	34	n	0.03	2	64	2	64	y	0.00	0	49	0	49	n	0.08	3	33	3	33	y	ENSMUSG00000068329.13	Htra2	chr6	protein_coding	HtrA serine peptidase 2
known_NIR_16040	chr6	83031994	83032110	+	83032029	83032110	A5SS	ENSMUST00000092618.9	known	0.03	10	319	10	319	y	0.04	12	281	12	281	y	0.05	13	257	13	257	y	0.00	0	305	0	305	n	0.05	20	371	20	371	y	0.00	0	213	0	213	n	0.03	10	359	10	359	y	0.08	17	195	17	195	y	0.04	12	272	12	272	y	0.00	0	373	0	373	n	0.04	15	330	15	330	y	0.04	14	324	14	324	y	ENSMUSG00000068328.10	Aup1	chr6	protein_coding	ancient ubiquitous protein 1
known_NIR_16041	chr6	83032029	83032487	+	83032029	83032110	A3SS	ENSMUST00000204895.3	known	0.00	0	319	0	319	n	0.00	1	281	1	281	n	0.00	1	257	1	257	n	0.01	2	305	2	305	y	0.00	0	371	0	371	n	0.00	0	213	0	213	n	0.00	0	359	0	359	n	0.00	0	195	0	195	n	0.00	0	272	0	272	n	0.00	0	373	0	373	n	0.00	0	330	0	330	n	0.00	0	324	0	324	n	ENSMUSG00000068328.10	Aup1	chr6	protein_coding	ancient ubiquitous protein 1
known_NIR_16042	chr6	83032029	83032487	+	83032029;83032260	83032110;83032487	ES	ENSMUST00000092618.9	known	0.00	0	303.5	0	319;288	n	0.00	1	297.5	1	281;314	n	0.00	1	284.0	1	257;311	n	0.01	2	331.0	2	305;357	y	0.00	0	382.5	0	371;394	n	0.00	0	202.5	0	213;192	n	0.00	0	381.0	0	359;403	n	0.00	0	200.5	0	195;206	n	0.00	0	288.0	0	272;304	n	0.00	0	408.5	0	373;444	n	0.00	0	329.5	0	330;329	n	0.00	0	375.5	0	324;427	n	ENSMUSG00000068328.10	Aup1	chr6	protein_coding	ancient ubiquitous protein 1
known_NIR_16043	chr6	83032029	83032487	+	83032260	83032487	A5SS&ES	ENSMUST00000204719.3	known	0.00	0	288	0	288	n	0.00	1	314	1	314	n	0.00	1	311	1	311	n	0.01	2	357	2	357	y	0.00	0	394	0	394	n	0.00	0	192	0	192	n	0.00	0	403	0	403	n	0.00	0	206	0	206	n	0.00	0	304	0	304	n	0.00	0	444	0	444	n	0.00	0	329	0	329	n	0.00	0	427	0	427	n	ENSMUSG00000068328.10	Aup1	chr6	protein_coding	ancient ubiquitous protein 1
known_NIR_16044	chr6	83034074	83034195	+	83034074	83034257	A3SS	ENSMUST00000092618.9	known	0.03	20	666	20	666	y	0.01	10	787	10	787	y	0.03	15	475	15	475	y	0.01	6	589	6	589	y	0.01	10	762	10	762	y	0.01	2	350	2	350	y	0.01	11	728	11	728	y	0.01	5	372	5	372	y	0.01	8	588	8	588	y	0.02	13	839	13	839	y	0.02	13	801	13	801	y	0.02	13	733	13	733	y	ENSMUSG00000068328.10	Aup1	chr6	protein_coding	ancient ubiquitous protein 1
known_NIR_16045	chr6	83097025	83097139	-	83097025	83097166	A5SS	ENSMUST00000032111.11	known	0.02	4	208	4	208	y	0.00	0	180	0	180	n	0.02	3	161	3	161	y	0.00	0	165	0	165	n	0.02	5	270	5	270	y	0.00	0	122	0	122	n	0.02	7	291	7	291	y	0.01	2	138	2	138	y	0.04	6	141	6	141	y	0.01	3	218	3	218	y	0.00	0	212	0	212	n	0.01	1	162	1	162	n	ENSMUSG00000030035.15	Wbp1	chr6	protein_coding	WW domain binding protein 1
known_NIR_16046	chr6	83097025	83098184	-	83097025;83097268	83097166;83098184	ES	ENSMUST00000113936.10	known	0.00	0	111.5	0	208;15	n	0.02	2	99.5	2	180;19	y	0.00	0	91.0	0	161;21	n	0.01	1	91.5	1	165;18	n	0.01	1	152.5	1	270;35	n	0.00	0	68.0	0	122;14	n	0.00	0	151.5	0	291;12	n	0.00	0	79.5	0	138;21	n	0.01	1	76.0	1	141;11	n	0.00	0	121.0	0	218;24	n	0.02	2	124.0	2	212;36	y	0.00	0	88.0	0	162;14	n	ENSMUSG00000030035.15	Wbp1	chr6	protein_coding	WW domain binding protein 1
known_NIR_16047	chr6	83097025	83098184	-	83097025;83097857	83097166;83098184	ES	ENSMUST00000131939.6	known	0.00	0	152.5	0	208;97	n	0.02	2	129.0	2	180;78	y	0.00	0	120.0	0	161;79	n	0.01	1	134.5	1	165;104	n	0.00	1	228.5	1	270;187	n	0.00	0	96.5	0	122;71	n	0.00	0	223.0	0	291;155	n	0.00	0	114.5	0	138;91	n	0.01	1	127.5	1	141;114	n	0.00	0	188.0	0	218;158	n	0.01	2	153.5	2	212;95	y	0.00	0	129.0	0	162;96	n	ENSMUSG00000030035.15	Wbp1	chr6	protein_coding	WW domain binding protein 1
known_NIR_16048	chr6	83097025	83098184	-	83097857	83098184	A3SS&ES	ENSMUST00000151393.7	known	0.00	0	97	0	97	n	0.03	2	78	2	78	y	0.00	0	79	0	79	n	0.01	1	104	1	104	n	0.01	1	187	1	187	n	0.00	0	71	0	71	n	0.00	0	155	0	155	n	0.00	0	91	0	91	n	0.01	1	114	1	114	n	0.00	0	158	0	158	n	0.02	2	95	2	95	y	0.00	0	96	0	96	n	ENSMUSG00000030035.15	Wbp1	chr6	protein_coding	WW domain binding protein 1
known_NIR_16049	chr6	83097268	83098184	-	83097268	83097753	5pMXE	ENSMUST00000142493.2	known	0.11	15	117	15	117	y	0.16	19	101	19	101	y	0.16	21	108	21	108	y	0.13	18	124	18	124	y	0.16	35	182	35	182	y	0.14	14	85	14	85	y	0.06	12	195	12	195	y	0.21	21	81	21	81	y	0.09	11	115	11	115	y	0.12	24	168	24	168	y	0.21	36	134	36	134	y	0.11	14	113	14	113	y	ENSMUSG00000030035.15	Wbp1	chr6	protein_coding	WW domain binding protein 1
known_NIR_16050	chr6	83097268	83098184	-	83097268;83097857	83097753;83098184	ES	ENSMUST00000032111.11	known	0.12	15	107.0	15	117;97	y	0.18	19	89.5	19	101;78	y	0.18	21	93.5	21	108;79	y	0.14	18	114.0	18	124;104	y	0.16	35	184.5	35	182;187	y	0.15	14	78.0	14	85;71	y	0.06	12	175.0	12	195;155	y	0.20	21	86.0	21	81;91	y	0.09	11	114.5	11	115;114	y	0.13	24	163.0	24	168;158	y	0.24	36	114.5	36	134;95	y	0.12	14	104.5	14	113;96	y	ENSMUSG00000030035.15	Wbp1	chr6	protein_coding	WW domain binding protein 1
known_NIR_16051	chr6	83097268	83098184	-	83097857	83098184	A3SS	ENSMUST00000131939.6	known	0.13	15	97	15	97	y	0.20	19	78	19	78	y	0.21	21	79	21	79	y	0.15	18	104	18	104	y	0.16	35	187	35	187	y	0.16	14	71	14	71	y	0.07	12	155	12	155	y	0.19	21	91	21	91	y	0.09	11	114	11	114	y	0.13	24	158	24	158	y	0.27	36	95	36	95	y	0.13	14	96	14	96	y	ENSMUSG00000030035.15	Wbp1	chr6	protein_coding	WW domain binding protein 1
known_NIR_16052	chr6	83097268;83097854	83097753;83098184	-	83097268	83098184	cassetteExon	ENSMUST00000113936.10	known	0.83	75.5	15	117;34	15	y	0.76	61.0	19	101;21	19	y	0.75	61.5	21	108;15	21	y	0.81	78.5	18	124;33	18	y	0.78	121.5	35	182;61	35	y	0.80	54.5	14	85;24	14	y	0.91	123.5	12	195;52	12	y	0.72	53.5	21	81;26	21	y	0.87	75.0	11	115;35	11	y	0.82	107.0	24	168;46	24	y	0.68	78.0	36	134;22	36	y	0.82	66.0	14	113;19	14	y	ENSMUSG00000030035.15	Wbp1	chr6	protein_coding	WW domain binding protein 1
known_NIR_16053	chr6	83097854	83098184	-	83097025	83098184	A3SS	ENSMUST00000123394.2	known	1.00	34	0	34	0	n	0.91	21	2	21	2	y	1.00	15	0	15	0	n	0.97	33	1	33	1	n	0.98	61	1	61	1	n	1.00	24	0	24	0	n	1.00	52	0	52	0	n	1.00	26	0	26	0	n	0.97	35	1	35	1	n	1.00	46	0	46	0	n	0.92	22	2	22	2	y	1.00	19	0	19	0	n	ENSMUSG00000030035.15	Wbp1	chr6	protein_coding	WW domain binding protein 1
known_NIR_16054	chr6	83097854	83098184	-	83097857	83098184	A3SS	ENSMUST00000032111.11	known	0.26	34	97	34	97	y	0.21	21	78	21	78	y	0.16	15	79	15	79	y	0.24	33	104	33	104	y	0.25	61	187	61	187	y	0.25	24	71	24	71	y	0.25	52	155	52	155	y	0.22	26	91	26	91	y	0.23	35	114	35	114	y	0.23	46	158	46	158	y	0.19	22	95	22	95	y	0.17	19	96	19	96	y	ENSMUSG00000030035.15	Wbp1	chr6	protein_coding	WW domain binding protein 1
known_NIR_16055	chr6	83115227	83122912	+	83113040	83122912	A5SS	ENSMUST00000065512.11	known	0.40	8	12	8	12	y	0.30	3	7	3	7	y	0.18	9	40	9	40	y	0.46	6	7	6	7	y	0.33	13	26	13	26	y	0.35	6	11	6	11	y	0.55	6	5	6	5	y	0.11	3	24	3	24	y	0.36	5	9	5	9	y	0.56	10	8	10	8	y	0.40	4	6	4	6	y	0.17	7	34	7	34	y	ENSMUSG00000034930.17	Rtkn	chr6	protein_coding	rhotekin
known_NIR_16056	chr6	83143050	83159506	+	83142976	83159506	A5SS	ENSMUST00000077407.12	known	0.18	2	9	2	9	y	0.10	1	9	1	9	n	0.09	3	29	3	29	y	0.18	4	18	4	18	y	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.22	4	14	4	14	y	0.06	1	16	1	16	n	0.06	1	15	1	15	n	0.05	1	19	1	19	n	0.07	1	13	1	13	n	0.14	3	19	3	19	y	ENSMUSG00000031865.17	Dctn1	chr6	protein_coding	dynactin 1
known_NIR_16057	chr6	83164766	83166059	+	83160315	83166059	A5SS	ENSMUST00000077407.12	known	0.00	0	18	0	18	n	0.00	0	18	0	18	n	0.00	0	22	0	22	n	0.04	1	25	1	25	n	0.00	0	37	0	37	n	0.00	0	17	0	17	n	0.11	5	39	5	39	y	0.00	0	18	0	18	n	0.00	0	17	0	17	n	0.00	0	29	0	29	n	0.00	0	17	0	17	n	0.03	1	30	1	30	n	ENSMUSG00000031865.17	Dctn1	chr6	protein_coding	dynactin 1
known_NIR_16058	chr6	83290528	83302697	-	83290528	83294411	5pMXE	ENSMUST00000005810.9	known	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.09	4	39	4	39	y	0.40	2	3	2	3	n	0.20	1	4	1	4	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	ENSMUSG00000005667.9	Mthfd2	chr6	protein_coding	methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase
known_NIR_16059	chr6	83303451	83306849	+	83303249	83306849	A5SS	ENSMUST00000055261.11	known	0.00	0	20	0	20	n	0.12	2	14	2	14	y	0.00	0	40	0	40	n	0.00	0	35	0	35	n	0.07	3	40	3	40	y	0.00	0	27	0	27	n	0.03	1	36	1	36	n	0.19	5	21	5	21	y	0.00	0	18	0	18	n	0.11	6	50	6	50	y	0.10	2	18	2	18	y	0.03	1	38	1	38	n	ENSMUSG00000043131.15	Mob1a	chr6	protein_coding	MOB kinase activator 1A
known_NIR_16060	chr6	83326536	83327258	+	83326536	83328248	A3SS	ENSMUST00000136501.2	known	0.02	6	290	6	290	y	0.01	2	239	2	239	y	0.02	5	204	5	204	y	0.02	5	278	5	278	y	0.02	7	289	7	289	y	0.00	0	151	0	151	n	0.01	4	341	4	341	y	0.03	4	130	4	130	y	0.01	2	215	2	215	y	0.01	2	337	2	337	y	0.02	7	291	7	291	y	0.03	8	281	8	281	y	ENSMUSG00000045160.15	Bola3	chr6	protein_coding	bolA-like 3 (E. coli)
known_NIR_16061	chr6	83330362	83335129	+	83330112	83335129	A5SS	ENSMUST00000122216.8	known	0.00	0	299	0	299	n	0.00	0	359	0	359	n	0.00	0	221	0	221	n	0.00	0	286	0	286	n	0.00	0	383	0	383	n	0.02	2	130	2	130	y	0.00	0	387	0	387	n	0.02	3	143	3	143	y	0.00	0	252	0	252	n	0.00	1	409	1	409	n	0.00	0	329	0	329	n	0.00	0	337	0	337	n	ENSMUSG00000045160.15	Bola3	chr6	protein_coding	bolA-like 3 (E. coli)
known_NIR_16062	chr6	83418255	83431732	-	83418255	83418532	5pMXE	ENSMUST00000089622.11	known	0.25	1	3	1	3	n	0.50	1	1	1	1	n	0.00	0	5	0	5	n	1.00	5	0	5	0	n	0.75	6	2	6	2	n	-	-	-	-	-	-	0.40	4	6	4	6	y	0.50	2	2	2	2	n	0.83	5	1	5	1	n	0.67	6	3	6	3	n	0.50	1	1	1	1	n	0.33	2	4	2	4	n	ENSMUSG00000034832.16	Tet3	chr6	protein_coding	tet methylcytosine dioxygenase 3
known_NIR_16063	chr6	83457418	83458329	-	83457418;83457924	83457825;83458329	ES	ENSMUST00000014698.10	known	0.31	18	40.0	18	40;40	y	0.27	17	45.5	17	49;42	y	0.28	16	41.0	16	35;47	y	0.14	7	44.5	7	34;55	y	0.24	18	58.5	18	53;64	y	0.24	8	25.0	8	21;29	y	0.29	21	52.0	21	54;50	y	0.27	6	16.5	6	19;14	y	0.27	12	32.0	12	28;36	y	0.17	12	58.0	12	74;42	y	0.18	9	40.5	9	33;48	y	0.18	12	54.5	12	52;57	y	ENSMUSG00000014554.14	Dguok	chr6	protein_coding	deoxyguanosine kinase
known_NIR_16064	chr6	83457418	83458329	-	83457924	83458329	3pMXE	ENSMUST00000206397.2	known	0.31	18	40	18	40	y	0.29	17	42	17	42	y	0.25	16	47	16	47	y	0.11	7	55	7	55	y	0.22	18	64	18	64	y	0.22	8	29	8	29	y	0.30	21	50	21	50	y	0.30	6	14	6	14	y	0.25	12	36	12	36	y	0.22	12	42	12	42	y	0.16	9	48	9	48	y	0.17	12	57	12	57	y	ENSMUSG00000014554.14	Dguok	chr6	protein_coding	deoxyguanosine kinase
known_NIR_16065	chr6	83458444;83458820	83458760;83463966	-	83458444	83463966	cassetteExon	ENSMUST00000014698.10	known	0.00	0.0	59	0;0	59	n	0.08	3.5	39	4;3	39	y	0.05	2.0	42	2;2	42	y	0.02	1.0	53	2;0	53	n	0.04	3.0	73	3;3	73	y	0.07	2.0	25	2;2	25	y	0.06	4.0	60	3;5	60	y	0.16	3.0	16	3;3	16	y	0.02	0.5	32	0;1	32	n	0.05	3.5	69	3;4	69	y	0.07	3.0	37	2;4	37	y	0.05	3.0	58	3;3	58	y	ENSMUSG00000014554.14	Dguok	chr6	protein_coding	deoxyguanosine kinase
known_NIR_16066	chr6	83467590	83470469	-	83467590	83473668	A5SS	ENSMUST00000014698.10	known	0.00	0	56	0	56	n	0.00	0	45	0	45	n	0.05	2	42	2	42	y	0.02	1	43	1	43	n	0.02	1	63	1	63	n	0.00	0	35	0	35	n	0.00	0	57	0	57	n	0.11	3	24	3	24	y	0.00	0	49	0	49	n	0.00	0	93	0	93	n	0.02	1	52	1	52	n	0.02	1	52	1	52	n	ENSMUSG00000014554.14	Dguok	chr6	protein_coding	deoxyguanosine kinase
known_NIR_16067	chr6	83467590	83483730	-	83467590;83473780	83473668;83483730	ES	ENSMUST00000014698.10	known	0.00	0	44.5	0	56;33	n	0.00	0	31.0	0	45;17	n	0.09	4	41.0	4	42;40	y	0.00	0	44.0	0	43;45	n	0.00	0	62.5	0	63;62	n	0.03	1	33.5	1	35;32	n	0.06	3	46.5	3	57;36	y	0.00	0	21.0	0	24;18	n	0.00	0	40.5	0	49;32	n	0.05	4	80.0	4	93;67	y	0.00	0	43.0	0	52;34	n	0.00	0	44.5	0	52;37	n	ENSMUSG00000014554.14	Dguok	chr6	protein_coding	deoxyguanosine kinase
known_NIR_16068	chr6	83547501	83548755	-	83547501	83549393	A5SS	ENSMUST00000205648.2	known	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.11	1	8	1	8	n	0.00	0	8	0	8	n	0.15	2	11	2	11	y	0.17	1	5	1	5	n	0.00	0	10	0	10	n	ENSMUSG00000006906.11	Stambp	chr6	protein_coding	STAM binding protein
known_NIR_16069	chr6	8373967;8401154	8401077;8426971	+	8373967	8426971	cassetteExon	ENSMUST00000159335.8	known	0.03	1.0	39	2;0	39	n	0.05	1.5	26	1;2	26	n	0.00	0.0	41	0;0	41	n	0.04	1.5	37	0;3	37	n	0.00	0.0	39	0;0	39	n	0.02	0.5	24	0;1	24	n	0.02	0.5	32	1;0	32	n	0.03	1.0	30	1;1	30	n	0.16	5.0	26	4;6	26	y	0.10	3.5	33	3;4	33	y	0.11	3.5	29	4;3	29	y	0.02	1.0	41	1;1	41	n	ENSMUSG00000089862.9	Umad1	chr6	protein_coding	UMAP1-MVP12 associated (UMA) domain containing 1
known_NIR_16070	chr6	83772230	83773889	+	83772264	83773889	A5SS	ENSMUST00000037376.14	known	0.11	2	17	2	17	y	0.23	3	10	3	10	y	0.00	0	23	0	23	n	0.08	1	11	1	11	n	0.08	2	24	2	24	y	0.24	8	25	8	25	y	0.09	3	31	3	31	y	0.07	1	14	1	14	n	0.15	3	17	3	17	y	0.07	2	25	2	25	y	0.10	2	19	2	19	y	0.00	0	28	0	28	n	ENSMUSG00000034744.14	Nagk	chr6	protein_coding	N-acetylglucosamine kinase
known_NIR_16071	chr6	83772356	83773889	+	83772230	83773889	A5SS	ENSMUST00000113851.8	known	0.78	7	2	7	2	n	0.77	10	3	10	3	y	1.00	9	0	9	0	n	0.83	5	1	5	1	n	0.83	10	2	10	2	y	0.33	4	8	4	8	y	0.84	16	3	16	3	y	0.83	5	1	5	1	n	0.57	4	3	4	3	n	0.83	10	2	10	2	y	0.83	10	2	10	2	y	1.00	13	0	13	0	n	ENSMUSG00000034744.14	Nagk	chr6	protein_coding	N-acetylglucosamine kinase
known_NIR_16072	chr6	83772356	83773889	+	83772264	83773889	A5SS	ENSMUST00000037376.14	known	0.29	7	17	7	17	y	0.50	10	10	10	10	y	0.28	9	23	9	23	y	0.31	5	11	5	11	y	0.29	10	24	10	24	y	0.14	4	25	4	25	y	0.34	16	31	16	31	y	0.26	5	14	5	14	y	0.19	4	17	4	17	y	0.29	10	25	10	25	y	0.34	10	19	10	19	y	0.32	13	28	13	28	y	ENSMUSG00000034744.14	Nagk	chr6	protein_coding	N-acetylglucosamine kinase
known_NIR_16073	chr6	83775079	83775465	+	83775079	83775526	A3SS	ENSMUST00000037376.14	known	0.04	3	64	3	64	y	0.08	4	48	4	48	y	0.02	1	47	1	47	n	0.00	0	51	0	51	n	0.00	0	73	0	73	n	0.04	2	44	2	44	y	0.04	2	54	2	54	y	0.02	1	54	1	54	n	0.02	1	53	1	53	n	0.01	1	90	1	90	n	0.06	3	51	3	51	y	0.00	0	58	0	58	n	ENSMUSG00000034744.14	Nagk	chr6	protein_coding	N-acetylglucosamine kinase
known_NIR_16074	chr6	83777340	83778009	+	83777340	83778073	A3SS	ENSMUST00000037376.14	known	0.00	0	69	0	69	n	0.05	3	56	3	56	y	0.00	0	63	0	63	n	0.02	1	53	1	53	n	0.01	1	85	1	85	n	0.00	0	40	0	40	n	0.00	0	101	0	101	n	0.00	0	38	0	38	n	0.00	0	49	0	49	n	0.00	0	68	0	68	n	0.00	0	62	0	62	n	0.00	0	74	0	74	n	ENSMUSG00000034744.14	Nagk	chr6	protein_coding	N-acetylglucosamine kinase
known_NIR_16075	chr6	83891461	83905635	+	83891471	83905635	A5SS	ENSMUST00000204751.3	known	0.86	6	1	6	1	n	0.75	3	1	3	1	n	0.90	9	1	9	1	n	0.92	23	2	23	2	y	0.83	10	2	10	2	y	0.71	5	2	5	2	n	1.00	10	0	10	0	n	0.69	11	5	11	5	y	1.00	9	0	9	0	n	0.86	12	2	12	2	y	1.00	4	0	4	0	n	0.80	8	2	8	2	y	ENSMUSG00000030016.15	Zfp638	chr6	protein_coding	zinc finger protein 638
known_NIR_16076	chr6	83891461	83911931	+	83891461	83905635	3pMXE	ENSMUST00000204580.3	known	0.14	1	6	1	6	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.08	2	23	2	23	y	0.09	1	10	1	10	n	0.17	1	5	1	5	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.27	3	8	3	8	y	ENSMUSG00000030016.15	Zfp638	chr6	protein_coding	zinc finger protein 638
known_NIR_16077	chr6	83891461	83911931	+	83891461;83907147	83905635;83911931	ES	ENSMUST00000204202.3	known	0.12	1	7.0	1	6;8	n	0.00	0	9.0	0	3;15	n	0.00	0	14.0	0	9;19	n	0.10	2	18.5	2	23;14	y	0.06	1	15.5	1	10;21	n	0.13	1	6.5	1	5;8	n	0.00	0	14.5	0	10;19	n	0.00	0	11.0	0	11;11	n	0.00	0	9.5	0	9;10	n	0.00	0	9.5	0	12;7	n	0.00	0	7.5	0	4;11	n	0.22	3	10.5	3	8;13	y	ENSMUSG00000030016.15	Zfp638	chr6	protein_coding	zinc finger protein 638
known_NIR_16078	chr6	83891461	83911931	+	83907147	83911931	A5SS&ES	ENSMUST00000204751.3	known	0.11	1	8	1	8	n	0.00	0	15	0	15	n	0.00	0	19	0	19	n	0.12	2	14	2	14	y	0.05	1	21	1	21	n	0.11	1	8	1	8	n	0.00	0	19	0	19	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.19	3	13	3	13	y	ENSMUSG00000030016.15	Zfp638	chr6	protein_coding	zinc finger protein 638
known_NIR_16079	chr6	83931743	83934491	+	83931743	83933676	3pMXE	ENSMUST00000204202.3	known	0.25	5	15	5	15	y	0.90	9	1	9	1	n	0.67	16	8	16	8	y	0.55	11	9	11	9	y	0.57	24	18	24	18	y	0.50	6	6	6	6	y	0.50	6	6	6	6	y	0.39	9	14	9	14	y	0.38	5	8	5	8	y	0.71	15	6	15	6	y	0.70	7	3	7	3	y	0.56	14	11	14	11	y	ENSMUSG00000030016.15	Zfp638	chr6	protein_coding	zinc finger protein 638
known_NIR_16080	chr6	83931743	83934491	+	83931743	83936913	A3SS	ENSMUST00000205166.2	known	1.00	5	0	5	0	n	1.00	9	0	9	0	n	0.94	16	1	16	1	n	1.00	11	0	11	0	n	0.92	24	2	24	2	y	1.00	6	0	6	0	n	1.00	6	0	6	0	n	1.00	9	0	9	0	n	1.00	5	0	5	0	n	0.94	15	1	15	1	n	1.00	7	0	7	0	n	1.00	14	0	14	0	n	ENSMUSG00000030016.15	Zfp638	chr6	protein_coding	zinc finger protein 638
known_NIR_16081	chr6	83931743	83934491	+	83931743;83933744	83933676;83934491	ES	ENSMUST00000204751.3	known	0.33	5	10.0	5	15;5	y	0.78	9	2.5	9	1;4	n	0.68	16	7.5	16	8;7	y	0.55	11	9.0	11	9;9	y	0.62	24	14.5	24	18;11	y	0.46	6	7.0	6	6;8	y	0.52	6	5.5	6	6;5	y	0.49	9	9.5	9	14;5	y	0.37	5	8.5	5	8;9	y	0.67	15	7.5	15	6;9	y	0.58	7	5.0	7	3;7	y	0.55	14	11.5	14	11;12	y	ENSMUSG00000030016.15	Zfp638	chr6	protein_coding	zinc finger protein 638
known_NIR_16082	chr6	83931743	83935166	+	83931743	83933676	3pMXE	ENSMUST00000204202.3	known	0.12	2	15	2	15	y	0.50	1	1	1	1	n	0.27	3	8	3	8	y	0.47	8	9	8	9	y	0.25	6	18	6	18	y	0.25	2	6	2	6	n	0.45	5	6	5	6	y	0.18	3	14	3	14	y	0.20	2	8	2	8	y	0.60	9	6	9	6	y	0.57	4	3	4	3	n	0.27	4	11	4	11	y	ENSMUSG00000030016.15	Zfp638	chr6	protein_coding	zinc finger protein 638
known_NIR_16083	chr6	83931743	83936913	+	83931743	83933676	3pMXE	ENSMUST00000204202.3	known	0.00	0	15	0	15	n	0.00	0	1	0	1	n	0.11	1	8	1	8	n	0.00	0	9	0	9	n	0.10	2	18	2	18	y	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.14	1	6	1	6	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	ENSMUSG00000030016.15	Zfp638	chr6	protein_coding	zinc finger protein 638
known_NIR_16084	chr6	83931743	83936913	+	83931743;83935234	83935166;83936913	ES	ENSMUST00000203455.3	known	0.00	0	12.5	0	2;23	n	0.00	0	9.5	0	1;18	n	0.06	1	17.0	1	3;31	n	0.00	0	21.5	0	8;35	n	0.08	2	23.5	2	6;41	y	0.00	0	7.0	0	2;12	n	0.00	0	19.0	0	5;33	n	0.00	0	10.0	0	3;17	n	0.00	0	13.0	0	2;24	n	0.05	1	19.5	1	9;30	n	0.00	0	16.5	0	4;29	n	0.00	0	16.0	0	4;28	n	ENSMUSG00000030016.15	Zfp638	chr6	protein_coding	zinc finger protein 638
known_NIR_16085	chr6	83931743;83934574	83934491;83935166	+	83931743	83935166	cassetteExon	ENSMUST00000203455.3	known	0.86	12.0	2	5;19	2	y	0.93	13.0	1	9;17	1	n	0.86	18.5	3	16;21	3	y	0.63	13.5	8	11;16	8	y	0.83	28.5	6	24;33	6	y	0.78	7.0	2	6;8	2	y	0.71	12.5	5	6;19	5	y	0.75	9.0	3	9;9	3	y	0.83	10.0	2	5;15	2	y	0.69	20.0	9	15;25	9	y	0.77	13.5	4	7;20	4	y	0.83	19.0	4	14;24	4	y	ENSMUSG00000030016.15	Zfp638	chr6	protein_coding	zinc finger protein 638
known_NIR_16086	chr6	83953332	83958666	+	83953332;83956891	83956829;83958666	ES	ENSMUST00000113835.10	known	0.26	5	14.0	5	3;25	y	0.36	8	14.5	8	1;28	n	0.19	3	13.0	3	4;22	y	0.29	4	10.0	4	2;18	y	0.29	5	12.0	5	2;22	y	0.43	3	4.0	3	0;8	n	0.08	1	12.0	1	4;20	n	0.33	2	4.0	2	0;8	n	0.48	7	7.5	7	2;13	y	0.18	3	13.5	3	1;26	n	0.78	9	2.5	9	0;5	n	0.20	3	12.0	3	0;24	n	ENSMUSG00000030016.15	Zfp638	chr6	protein_coding	zinc finger protein 638
known_NIR_16087	chr6	83953332	83958666	+	83956891	83958666	A5SS&ES	ENSMUST00000032088.14	known	0.17	5	25	5	25	y	0.22	8	28	8	28	y	0.12	3	22	3	22	y	0.18	4	18	4	18	y	0.19	5	22	5	22	y	0.27	3	8	3	8	y	0.05	1	20	1	20	n	0.20	2	8	2	8	y	0.35	7	13	7	13	y	0.10	3	26	3	26	y	0.64	9	5	9	5	y	0.11	3	24	3	24	y	ENSMUSG00000030016.15	Zfp638	chr6	protein_coding	zinc finger protein 638
known_NIR_16088	chr6	83953332	83960958	+	83953332;83958767	83958666;83960958	ES	ENSMUST00000203324.3	known	0.29	3	7.5	3	5;10	y	0.25	4	12.0	4	8;16	y	0.34	6	11.5	6	3;20	y	0.41	6	8.5	6	4;13	y	0.22	4	14.5	4	5;24	y	0.14	1	6.0	1	3;9	n	0.24	5	15.5	5	1;30	n	0.62	5	3.0	5	2;4	y	0.20	3	12.0	3	7;17	y	0.31	7	15.5	7	3;28	y	0.21	5	18.5	5	9;28	y	0.22	2	7.0	2	3;11	y	ENSMUSG00000030016.15	Zfp638	chr6	protein_coding	zinc finger protein 638
known_NIR_16089	chr6	83953332	83960958	+	83956891	83960958	A5SS&ES	ENSMUST00000204751.3	known	0.06	3	45	3	45	y	0.07	4	53	4	53	y	0.10	6	54	6	54	y	0.14	6	37	6	37	y	0.08	4	47	4	47	y	0.02	1	40	1	40	n	0.10	5	46	5	46	y	0.12	5	38	5	38	y	0.07	3	37	3	37	y	0.09	7	68	7	68	y	0.12	5	36	5	36	y	0.04	2	47	2	47	y	ENSMUSG00000030016.15	Zfp638	chr6	protein_coding	zinc finger protein 638
known_NIR_16090	chr6	83953332	83960958	+	83958767	83960958	A5SS&ES	ENSMUST00000113836.6	known	0.23	3	10	3	10	y	0.20	4	16	4	16	y	0.23	6	20	6	20	y	0.32	6	13	6	13	y	0.14	4	24	4	24	y	0.10	1	9	1	9	n	0.14	5	30	5	30	y	0.56	5	4	5	4	n	0.15	3	17	3	17	y	0.20	7	28	7	28	y	0.15	5	28	5	28	y	0.15	2	11	2	11	y	ENSMUSG00000030016.15	Zfp638	chr6	protein_coding	zinc finger protein 638
known_NIR_16091	chr6	83953332;83956891	83956829;83960958	+	83953332	83960958	cassetteExon	ENSMUST00000203891.3	known	0.89	24.0	3	3;45	3	y	0.87	27.0	4	1;53	4	n	0.83	29.0	6	4;54	6	y	0.76	19.5	6	2;37	6	y	0.86	24.5	4	2;47	4	y	0.95	20.0	1	0;40	1	n	0.83	25.0	5	4;46	5	y	0.79	19.0	5	0;38	5	n	0.87	19.5	3	2;37	3	y	0.83	34.5	7	1;68	7	n	0.78	18.0	5	0;36	5	n	0.92	23.5	2	0;47	2	n	ENSMUSG00000030016.15	Zfp638	chr6	protein_coding	zinc finger protein 638
known_NIR_16092	chr6	83953332;83956891	83956829;83960958	+	83953332;83958767	83958666;83960958	MXE	ENSMUST00000203324.3	known	0.76	24.0	7.5	3;45	5;10	y	0.69	27.0	12.0	1;53	8;16	n	0.72	29.0	11.5	4;54	3;20	y	0.70	19.5	8.5	2;37	4;13	y	0.63	24.5	14.5	2;47	5;24	y	0.77	20.0	6.0	0;40	3;9	n	0.62	25.0	15.5	4;46	1;30	n	0.86	19.0	3.0	0;38	2;4	n	0.62	19.5	12.0	2;37	7;17	y	0.69	34.5	15.5	1;68	3;28	n	0.49	18.0	18.5	0;36	9;28	n	0.77	23.5	7.0	0;47	3;11	n	ENSMUSG00000030016.15	Zfp638	chr6	protein_coding	zinc finger protein 638
known_NIR_16093	chr6	83956891	83960958	+	83956891	83958666	3pMXE	ENSMUST00000203056.2	known	0.64	45	25	45	25	y	0.65	53	28	53	28	y	0.71	54	22	54	22	y	0.67	37	18	37	18	y	0.68	47	22	47	22	y	0.83	40	8	40	8	y	0.70	46	20	46	20	y	0.83	38	8	38	8	y	0.74	37	13	37	13	y	0.72	68	26	68	26	y	0.88	36	5	36	5	y	0.66	47	24	47	24	y	ENSMUSG00000030016.15	Zfp638	chr6	protein_coding	zinc finger protein 638
known_NIR_16094	chr6	83956891	83960958	+	83958767	83960958	A5SS&ES	ENSMUST00000113836.6	known	0.82	45	10	45	10	y	0.77	53	16	53	16	y	0.73	54	20	54	20	y	0.74	37	13	37	13	y	0.66	47	24	47	24	y	0.82	40	9	40	9	y	0.61	46	30	46	30	y	0.90	38	4	38	4	y	0.69	37	17	37	17	y	0.71	68	28	68	28	y	0.56	36	28	36	28	y	0.81	47	11	47	11	y	ENSMUSG00000030016.15	Zfp638	chr6	protein_coding	zinc finger protein 638
known_NIR_16095	chr6	83956891;83958767	83958666;83960958	+	83956891	83960958	cassetteExon	ENSMUST00000204751.3	known	0.28	17.5	45	25;10	45	y	0.29	22.0	53	28;16	53	y	0.28	21.0	54	22;20	54	y	0.30	15.5	37	18;13	37	y	0.33	23.0	47	22;24	47	y	0.18	8.5	40	8;9	40	y	0.35	25.0	46	20;30	46	y	0.14	6.0	38	8;4	38	y	0.29	15.0	37	13;17	37	y	0.28	27.0	68	26;28	68	y	0.31	16.5	36	5;28	36	y	0.27	17.5	47	24;11	47	y	ENSMUSG00000030016.15	Zfp638	chr6	protein_coding	zinc finger protein 638
known_NIR_16096	chr6	8401154	8426971	+	8270581	8426971	A5SS	ENSMUST00000162034.8	known	-	-	-	-	-	-	1.00	2	0	2	0	n	0.00	0	2	0	2	n	1.00	3	0	3	0	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	6	0	6	0	n	0.40	4	6	4	6	y	1.00	3	0	3	0	n	0.50	1	1	1	1	n	ENSMUSG00000089862.9	Umad1	chr6	protein_coding	UMAP1-MVP12 associated (UMA) domain containing 1
known_NIR_16097	chr6	84064856	84074690	+	84064856;84073500	84073459;84074690	ES	ENSMUST00000113821.8	known	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0.0	3	0;0	n	-	-	-	-	-	-	0.40	1	1.5	1	1;2	n	-	-	-	-	-	-	0.52	6	5.5	6	6;5	y	0.00	0	0.5	0	0;1	n	1.00	2	0.0	2	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.80	2	0.5	2	1;0	n	ENSMUSG00000033788.16	Dysf	chr6	protein_coding	dysferlin
known_NIR_16098	chr6	84129391;84134183	84134121;84156654	+	84129391	84156654	cassetteExon	ENSMUST00000113821.8	known	0.00	0.0	3	0;0	3	n	0.33	1.5	3	2;1	3	n	0.20	1.0	4	2;0	4	n	0.43	3.0	4	4;2	4	y	0.33	1.0	2	2;0	2	n	1.00	1.0	0	2;0	0	n	0.50	1.0	1	0;2	1	n	0.00	0.0	1	0;0	1	n	0.29	2.0	5	3;1	5	n	0.20	0.5	2	1;0	2	n	1.00	1.0	0	2;0	0	n	0.38	3.0	5	1;5	5	n	ENSMUSG00000033788.16	Dysf	chr6	protein_coding	dysferlin
known_NIR_16099	chr6	84187620	84187775	+	84184222	84187775	A5SS	ENSMUST00000113821.8	known	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.12	4	29	4	29	y	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	11	0	11	n	ENSMUSG00000033788.16	Dysf	chr6	protein_coding	dysferlin
known_NIR_16100	chr6	85113913	85114421	-	85114095	85114421	A3SS	ENSMUST00000204757.3	known	0.00	0	421	0	421	n	0.00	0	404	0	404	n	0.03	11	381	11	381	y	0.01	6	471	6	471	y	0.02	13	555	13	555	y	0.02	5	232	5	232	y	0.02	14	547	14	547	y	0.00	0	272	0	272	n	0.02	7	373	7	373	y	0.00	0	602	0	602	n	0.02	12	534	12	534	y	0.02	12	537	12	537	y	ENSMUSG00000033735.10	Spr	chr6	protein_coding	sepiapterin reductase
known_NIR_16101	chr6	85113913;85114095	85114043;85114421	-	85113913	85114421	cassetteExon	ENSMUST00000174769.2	known	1.00	223.5	0	26;421	0	n	1.00	214.5	0	25;404	0	n	0.95	213.0	11	45;381	11	y	0.98	250.5	6	30;471	6	y	0.96	299.0	13	43;555	13	y	0.96	124.5	5	17;232	5	y	0.95	286.5	14	26;547	14	y	1.00	144.0	0	16;272	0	n	0.97	196.0	7	19;373	7	y	1.00	316.0	0	30;602	0	n	0.96	282.0	12	30;534	12	y	0.96	286.5	12	36;537	12	y	ENSMUSG00000033735.10	Spr	chr6	protein_coding	sepiapterin reductase
known_NIR_16102	chr6	85276316	85276522	-	85266770	85276522	A3SS	ENSMUST00000045846.12	known	0.10	3	26	3	26	y	0.26	5	14	5	14	y	0.05	1	19	1	19	n	0.12	4	29	4	29	y	0.06	3	46	3	46	y	0.18	2	9	2	9	y	0.08	3	34	3	34	y	0.09	2	21	2	21	y	0.00	0	18	0	18	n	0.04	2	44	2	44	y	0.21	4	15	4	15	y	0.14	5	31	5	31	y	ENSMUSG00000033720.13	Sfxn5	chr6	protein_coding	sideroflexin 5
known_NIR_16103	chr6	85295951	85296504	-	85276599	85296504	A3SS	ENSMUST00000045846.12	known	0.00	0	31	0	31	n	0.28	5	13	5	13	y	0.12	1	7	1	7	n	0.00	0	32	0	32	n	0.04	1	24	1	24	n	0.07	1	14	1	14	n	0.00	0	29	0	29	n	0.00	0	12	0	12	n	0.00	0	17	0	17	n	0.05	2	41	2	41	y	0.00	0	22	0	22	n	0.06	2	31	2	31	y	ENSMUSG00000033720.13	Sfxn5	chr6	protein_coding	sideroflexin 5
known_NIR_16104	chr6	85296572	85309262	-	85296572	85310290	A5SS	ENSMUST00000045846.12	known	0.00	0	26	0	26	n	0.15	2	11	2	11	y	0.00	0	8	0	8	n	0.03	1	32	1	32	n	0.04	1	26	1	26	n	0.08	1	12	1	12	n	0.00	0	28	0	28	n	0.00	0	7	0	7	n	0.00	0	26	0	26	n	0.02	1	49	1	49	n	0.03	1	33	1	33	n	0.00	0	24	0	24	n	ENSMUSG00000033720.13	Sfxn5	chr6	protein_coding	sideroflexin 5
known_NIR_16105	chr6	85425027	85428095	-	85425027	85425473	A5SS&ES	ENSMUST00000126805.8	known	0.11	6	48	6	48	y	0.10	3	28	3	28	y	0.00	0	41	0	41	n	0.00	0	40	0	40	n	0.00	0	38	0	38	n	0.00	0	26	0	26	n	0.02	1	44	1	44	n	0.00	0	22	0	22	n	0.02	1	42	1	42	n	0.00	0	54	0	54	n	0.02	1	47	1	47	n	0.00	0	34	0	34	n	ENSMUSG00000030008.10	Pradc1	chr6	protein_coding	protease-associated domain containing 1
known_NIR_16106	chr6	85425027	85428095	-	85425027;85425573	85425473;85428095	ES	ENSMUST00000032080.9	known	0.17	6	29.5	6	48;11	y	0.12	3	21.0	3	28;14	y	0.00	0	29.0	0	41;17	n	0.00	0	25.0	0	40;10	n	0.00	0	29.5	0	38;21	n	0.00	0	22.0	0	26;18	n	0.03	1	28.0	1	44;12	n	0.00	0	19.0	0	22;16	n	0.04	1	25.5	1	42;9	n	0.00	0	31.5	0	54;9	n	0.03	1	30.5	1	47;14	n	0.00	0	25.0	0	34;16	n	ENSMUSG00000030008.10	Pradc1	chr6	protein_coding	protease-associated domain containing 1
known_NIR_16107	chr6	85425027	85428095	-	85425573	85428095	A3SS	ENSMUST00000203934.2	known	0.35	6	11	6	11	y	0.18	3	14	3	14	y	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.00	0	21	0	21	n	0.00	0	18	0	18	n	0.08	1	12	1	12	n	0.00	0	16	0	16	n	0.10	1	9	1	9	n	0.00	0	9	0	9	n	0.07	1	14	1	14	n	0.00	0	16	0	16	n	ENSMUSG00000030008.10	Pradc1	chr6	protein_coding	protease-associated domain containing 1
known_NIR_16108	chr6	85425573	85428739	-	85425573	85428095	5pMXE	ENSMUST00000032080.9	known	0.71	27	11	27	11	y	0.62	23	14	23	14	y	0.50	17	17	17	17	y	0.66	19	10	19	10	y	0.53	24	21	24	21	y	0.36	10	18	10	18	y	0.77	40	12	40	12	y	0.27	6	16	6	16	y	0.57	12	9	12	9	y	0.73	24	9	24	9	y	0.62	23	14	23	14	y	0.60	24	16	24	16	y	ENSMUSG00000030008.10	Pradc1	chr6	protein_coding	protease-associated domain containing 1
known_NIR_16109	chr6	85888002	85892192	-	85888002	85892516	A5SS	ENSMUST00000161198.4	known	0.00	3	793	3	793	y	0.00	0	596	0	596	n	0.02	4	161	4	161	y	0.00	2	843	2	843	y	0.01	4	439	4	439	y	0.00	0	77	0	77	n	0.01	5	560	5	560	y	0.00	0	149	0	149	n	0.00	5	1103	5	1103	y	0.01	8	1228	8	1228	y	0.01	7	1176	7	1176	y	0.01	7	1242	7	1242	y	ENSMUSG00000057103.12	Nat8f1	chr6	protein_coding	N-acetyltransferase 8 (GCN5-related) family member 1
known_NIR_16110	chr6	85892349	85898405	+	85892772	85898405	5pMXE	ENSMUST00000113751.8	known	0.00	0	53	0	53	n	0.00	0	30	0	30	n	0.00	0	47	0	47	n	0.03	3	94	3	94	y	0.00	0	75	0	75	n	0.00	0	19	0	19	n	0.00	0	64	0	64	n	0.00	0	26	0	26	n	0.00	0	94	0	94	n	0.00	0	132	0	132	n	0.00	0	100	0	100	n	0.00	0	104	0	104	n	ENSMUSG00000054226.14	Tprkb	chr6	protein_coding	Tp53rk binding protein
known_NIR_16111	chr6	85892772	85896899	+	85892772	85901342	A3SS	ENSMUST00000113752.8	known	1.00	8	0	8	0	n	0.78	7	2	7	2	n	0.70	7	3	7	3	y	0.75	9	3	9	3	y	1.00	12	0	12	0	n	1.00	8	0	8	0	n	1.00	11	0	11	0	n	1.00	3	0	3	0	n	0.87	13	2	13	2	y	0.82	14	3	14	3	y	1.00	12	0	12	0	n	0.90	9	1	9	1	n	ENSMUSG00000054226.14	Tprkb	chr6	protein_coding	Tp53rk binding protein
known_NIR_16112	chr6	85892772	85901342	+	85892772;85898493	85898405;85901342	ES	ENSMUST00000113751.8	known	0.00	0	97.0	0	53;141	n	0.02	2	86.0	2	30;142	y	0.03	3	100.0	3	47;153	y	0.02	3	177.0	3	94;260	y	0.00	0	147.5	0	75;220	n	0.00	0	41.5	0	19;64	n	0.00	0	140.0	0	64;216	n	0.00	0	57.0	0	26;88	n	0.01	2	181.0	2	94;268	y	0.01	3	232.0	3	132;332	y	0.00	0	204.5	0	100;309	n	0.00	1	215.5	1	104;327	n	ENSMUSG00000054226.14	Tprkb	chr6	protein_coding	Tp53rk binding protein
known_NIR_16113	chr6	85892772	85901342	+	85898493	85901342	A5SS&ES	ENSMUST00000200680.4	known	0.00	0	141	0	141	n	0.01	2	142	2	142	y	0.02	3	153	3	153	y	0.01	3	260	3	260	y	0.00	0	220	0	220	n	0.00	0	64	0	64	n	0.00	0	216	0	216	n	0.00	0	88	0	88	n	0.01	2	268	2	268	y	0.01	3	332	3	332	y	0.00	0	309	0	309	n	0.00	1	327	1	327	n	ENSMUSG00000054226.14	Tprkb	chr6	protein_coding	Tp53rk binding protein
known_NIR_16114	chr6	85892772;85897006	85896899;85898405	+	85892772	85898405	cassetteExon	ENSMUST00000113751.8	known	0.23	15.5	53	8;23	53	y	0.29	12.5	30	7;18	30	y	0.27	17.0	47	7;27	47	y	0.17	19.0	94	9;29	94	y	0.21	20.0	75	12;28	75	y	0.31	8.5	19	8;9	19	y	0.23	19.0	64	11;27	64	y	0.21	7.0	26	3;11	26	y	0.19	22.0	94	13;31	94	y	0.18	29.5	132	14;45	132	y	0.19	23.0	100	12;34	100	y	0.20	25.5	104	9;42	104	y	ENSMUSG00000054226.14	Tprkb	chr6	protein_coding	Tp53rk binding protein
known_NIR_16115	chr6	85893089	85898405	+	85892349	85898405	A5SS	ENSMUST00000201217.4	known	1.00	16	0	16	0	n	1.00	13	0	13	0	n	1.00	14	0	14	0	n	0.93	39	3	39	3	y	1.00	42	0	42	0	n	1.00	7	0	7	0	n	1.00	28	0	28	0	n	1.00	13	0	13	0	n	1.00	24	0	24	0	n	1.00	33	0	33	0	n	1.00	29	0	29	0	n	1.00	30	0	30	0	n	ENSMUSG00000054226.14	Tprkb	chr6	protein_coding	Tp53rk binding protein
known_NIR_16116	chr6	85893089	85898405	+	85892772	85898405	A5SS	ENSMUST00000113751.8	known	0.23	16	53	16	53	y	0.30	13	30	13	30	y	0.23	14	47	14	47	y	0.29	39	94	39	94	y	0.36	42	75	42	75	y	0.27	7	19	7	19	y	0.30	28	64	28	64	y	0.33	13	26	13	26	y	0.20	24	94	24	94	y	0.20	33	132	33	132	y	0.22	29	100	29	100	y	0.22	30	104	30	104	y	ENSMUSG00000054226.14	Tprkb	chr6	protein_coding	Tp53rk binding protein
known_NIR_16117	chr6	85893089	85898405	+	85897006	85898405	A5SS&ES	ENSMUST00000113753.8	known	0.41	16	23	16	23	y	0.42	13	18	13	18	y	0.34	14	27	14	27	y	0.57	39	29	39	29	y	0.60	42	28	42	28	y	0.44	7	9	7	9	y	0.51	28	27	28	27	y	0.54	13	11	13	11	y	0.44	24	31	24	31	y	0.42	33	45	33	45	y	0.46	29	34	29	34	y	0.42	30	42	30	42	y	ENSMUSG00000054226.14	Tprkb	chr6	protein_coding	Tp53rk binding protein
known_NIR_16118	chr6	85897006	85898405	+	85892349	85898405	A5SS	ENSMUST00000201217.4	known	1.00	23	0	23	0	n	1.00	18	0	18	0	n	1.00	27	0	27	0	n	0.91	29	3	29	3	y	1.00	28	0	28	0	n	1.00	9	0	9	0	n	1.00	27	0	27	0	n	1.00	11	0	11	0	n	1.00	31	0	31	0	n	1.00	45	0	45	0	n	1.00	34	0	34	0	n	1.00	42	0	42	0	n	ENSMUSG00000054226.14	Tprkb	chr6	protein_coding	Tp53rk binding protein
known_NIR_16119	chr6	85898493;85900198	85900115;85901342	+	85898493	85901342	cassetteExon	ENSMUST00000200680.4	known	0.17	28.0	141	26;30	141	y	0.10	15.0	142	12;18	142	y	0.09	15.0	153	16;14	153	y	0.08	22.5	260	23;22	260	y	0.13	32.5	220	31;34	220	y	0.10	7.5	64	7;8	64	y	0.08	19.0	216	18;20	216	y	0.13	13.0	88	13;13	88	y	0.12	35.0	268	31;39	268	y	0.12	45.5	332	38;53	332	y	0.09	29.0	309	30;28	309	y	0.09	31.5	327	31;32	327	y	ENSMUSG00000054226.14	Tprkb	chr6	protein_coding	Tp53rk binding protein
known_NIR_16120	chr6	85900198	85901342	+	85892772	85901342	A5SS	ENSMUST00000113752.8	known	1.00	30	0	30	0	n	0.90	18	2	18	2	y	0.82	14	3	14	3	y	0.88	22	3	22	3	y	1.00	34	0	34	0	n	1.00	8	0	8	0	n	1.00	20	0	20	0	n	1.00	13	0	13	0	n	0.95	39	2	39	2	y	0.95	53	3	53	3	y	1.00	28	0	28	0	n	0.97	32	1	32	1	n	ENSMUSG00000054226.14	Tprkb	chr6	protein_coding	Tp53rk binding protein
known_NIR_16121	chr6	85901504	85904241	+	85901504	85904223	A3SS	ENSMUST00000200680.4	known	0.01	2	195	2	195	y	0.00	0	210	0	210	n	0.01	2	214	2	214	y	0.02	6	285	6	285	y	0.01	4	273	4	273	y	0.00	0	88	0	88	n	0.02	5	262	5	262	y	0.00	0	100	0	100	n	0.00	0	362	0	362	n	0.00	1	415	1	415	n	0.00	0	337	0	337	n	0.01	5	426	5	426	y	ENSMUSG00000054226.14	Tprkb	chr6	protein_coding	Tp53rk binding protein
known_NIR_16122	chr6	85927075	85929287	-	85927075	85927496	5pMXE	ENSMUST00000137527.8	known	0.00	0	101	0	101	n	0.00	0	112	0	112	n	0.00	0	152	0	152	n	0.00	0	96	0	96	n	0.00	0	153	0	153	n	0.00	0	92	0	92	n	0.01	1	132	1	132	n	0.01	1	72	1	72	n	0.00	0	132	0	132	n	0.02	2	123	2	123	y	0.00	0	95	0	95	n	0.00	0	134	0	134	n	ENSMUSG00000030002.16	Dusp11	chr6	protein_coding	dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)
known_NIR_16123	chr6	85927075	85929287	-	85927075;85927542	85927496;85929287	ES	ENSMUST00000032071.13	known	0.00	0	88.0	0	101;75	n	0.00	0	98.0	0	112;84	n	0.00	0	150.0	0	152;148	n	0.00	0	81.5	0	96;67	n	0.00	0	145.0	0	153;137	n	0.00	0	83.5	0	92;75	n	0.01	1	117.5	1	132;103	n	0.02	1	62.5	1	72;53	n	0.00	0	115.0	0	132;98	n	0.02	2	116.0	2	123;109	y	0.00	0	93.0	0	95;91	n	0.00	0	122.5	0	134;111	n	ENSMUSG00000030002.16	Dusp11	chr6	protein_coding	dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)
known_NIR_16124	chr6	85930476	85930819	-	85930476	85935566	A5SS	ENSMUST00000032071.13	known	0.11	6	48	6	48	y	0.22	8	28	8	28	y	0.16	15	80	15	80	y	0.16	8	42	8	42	y	0.22	10	36	10	36	y	0.23	7	23	7	23	y	0.15	11	64	11	64	y	0.21	10	38	10	38	y	0.10	5	44	5	44	y	0.06	4	62	4	62	y	0.10	6	52	6	52	y	0.14	11	70	11	70	y	ENSMUSG00000030002.16	Dusp11	chr6	protein_coding	dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)
known_NIR_16125	chr6	85932382	85935566	-	85930476	85935566	A3SS	ENSMUST00000032071.13	known	0.19	11	48	11	48	y	0.33	14	28	14	28	y	0.37	46	80	46	80	y	0.32	20	42	20	42	y	0.52	39	36	39	36	y	0.51	24	23	24	23	y	0.33	32	64	32	64	y	0.27	14	38	14	38	y	0.31	20	44	20	44	y	0.24	20	62	20	62	y	0.22	15	52	15	52	y	0.33	35	70	35	70	y	ENSMUSG00000030002.16	Dusp11	chr6	protein_coding	dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)
known_NIR_16126	chr6	85932386	85935566	-	85930476	85935566	A3SS	ENSMUST00000032071.13	known	0.04	2	48	2	48	y	0.07	2	28	2	28	y	0.02	2	80	2	80	y	0.00	0	42	0	42	n	0.00	0	36	0	36	n	0.04	1	23	1	23	n	0.03	2	64	2	64	y	0.00	0	38	0	38	n	0.04	2	44	2	44	y	0.00	0	62	0	62	n	0.07	4	52	4	52	y	0.00	0	70	0	70	n	ENSMUSG00000030002.16	Dusp11	chr6	protein_coding	dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)
known_NIR_16127	chr6	85932386	85935566	-	85932382	85935566	A3SS	ENSMUST00000151394.8	known	0.15	2	11	2	11	y	0.12	2	14	2	14	y	0.04	2	46	2	46	y	0.00	0	20	0	20	n	0.00	0	39	0	39	n	0.04	1	24	1	24	n	0.06	2	32	2	32	y	0.00	0	14	0	14	n	0.09	2	20	2	20	y	0.00	0	20	0	20	n	0.21	4	15	4	15	y	0.00	0	35	0	35	n	ENSMUSG00000030002.16	Dusp11	chr6	protein_coding	dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)
known_NIR_16128	chr6	86348686	86352659	+	86348596	86352659	A5SS	ENSMUST00000089558.7	known	0.02	4	212	4	212	y	0.00	0	238	0	238	n	0.00	0	247	0	247	n	0.01	3	224	3	224	y	0.00	1	236	1	236	n	0.00	0	144	0	144	n	0.00	0	256	0	256	n	0.00	0	148	0	148	n	0.01	1	182	1	182	n	0.00	0	233	0	233	n	0.00	0	267	0	267	n	0.00	1	220	1	220	n	ENSMUSG00000057278.9	Snrpg	chr6	protein_coding	small nuclear ribonucleoprotein polypeptide G
known_NIR_16129	chr6	86348975	86352659	+	86348596	86352659	A5SS	ENSMUST00000089558.7	known	0.00	1	212	1	212	n	0.00	1	238	1	238	n	0.00	0	247	0	247	n	0.00	0	224	0	224	n	0.01	2	236	2	236	y	0.00	0	144	0	144	n	0.00	1	256	1	256	n	0.00	0	148	0	148	n	0.00	0	182	0	182	n	0.00	0	233	0	233	n	0.00	0	267	0	267	n	0.00	1	220	1	220	n	ENSMUSG00000057278.9	Snrpg	chr6	protein_coding	small nuclear ribonucleoprotein polypeptide G
known_NIR_16130	chr6	86366353	86369119	-	86366353;86368810	86368658;86369119	ES	ENSMUST00000032065.15	known	0.01	1	160.0	1	160;160	n	0.00	0	107.5	0	117;98	n	0.01	1	169.0	1	165;173	n	0.00	0	281.0	0	284;278	n	0.00	0	302.0	0	325;279	n	0.01	1	126.5	1	148;105	n	0.00	0	255.5	0	274;237	n	0.01	2	148.5	2	151;146	y	0.00	0	196.5	0	209;184	n	0.00	0	343.5	0	352;335	n	0.00	0	174.0	0	172;176	n	0.01	3	270.0	3	279;261	y	ENSMUSG00000029998.15	Pcyox1	chr6	protein_coding	prenylcysteine oxidase 1
known_NIR_16131	chr6	86366353	86369119	-	86368810	86369119	3pMXE	ENSMUST00000153723.3	known	0.01	1	160	1	160	n	0.00	0	98	0	98	n	0.01	1	173	1	173	n	0.00	0	278	0	278	n	0.00	0	279	0	279	n	0.01	1	105	1	105	n	0.00	0	237	0	237	n	0.01	2	146	2	146	y	0.00	0	184	0	184	n	0.00	0	335	0	335	n	0.00	0	176	0	176	n	0.01	3	261	3	261	y	ENSMUSG00000029998.15	Pcyox1	chr6	protein_coding	prenylcysteine oxidase 1
known_NIR_16132	chr6	86371565	86373955	-	86371565	86372896	5pMXE	ENSMUST00000129650.2	known	0.23	27	93	27	93	y	0.25	18	54	18	54	y	0.21	30	115	30	115	y	0.19	40	172	40	172	y	0.18	45	205	45	205	y	0.14	13	81	13	81	y	0.17	32	155	32	155	y	0.13	15	100	15	100	y	0.16	20	106	20	106	y	0.11	28	216	28	216	y	0.19	24	105	24	105	y	0.18	31	139	31	139	y	ENSMUSG00000029998.15	Pcyox1	chr6	protein_coding	prenylcysteine oxidase 1
known_NIR_16133	chr6	86371565	86373955	-	86371565;86373102	86372896;86373955	ES	ENSMUST00000032065.15	known	0.21	27	99.5	27	93;106	y	0.23	18	62.0	18	54;70	y	0.20	30	116.5	30	115;118	y	0.19	40	169.5	40	172;167	y	0.19	45	194.0	45	205;183	y	0.15	13	75.0	13	81;69	y	0.18	32	149.5	32	155;144	y	0.12	15	107.5	15	100;115	y	0.18	20	93.0	20	106;80	y	0.13	28	187.0	28	216;158	y	0.19	24	100.0	24	105;95	y	0.18	31	146.0	31	139;153	y	ENSMUSG00000029998.15	Pcyox1	chr6	protein_coding	prenylcysteine oxidase 1
known_NIR_16134	chr6	86371565	86373955	-	86373102	86373955	3pMXE	ENSMUST00000203960.2	known	0.20	27	106	27	106	y	0.20	18	70	18	70	y	0.20	30	118	30	118	y	0.19	40	167	40	167	y	0.20	45	183	45	183	y	0.16	13	69	13	69	y	0.18	32	144	32	144	y	0.12	15	115	15	115	y	0.20	20	80	20	80	y	0.15	28	158	28	158	y	0.20	24	95	24	95	y	0.17	31	153	31	153	y	ENSMUSG00000029998.15	Pcyox1	chr6	protein_coding	prenylcysteine oxidase 1
known_NIR_16135	chr6	86395914	86397306	+	86395914	86396083	3pMXE	ENSMUST00000143718.8	known	0.25	1	3	1	3	n	0.50	2	2	2	2	n	0.43	3	4	3	4	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.67	6	3	6	3	n	0.57	4	3	4	3	n	0.17	2	10	2	10	y	1.00	2	0	2	0	n	0.40	4	6	4	6	y	0.25	2	6	2	6	n	0.33	1	2	1	2	n	ENSMUSG00000071337.12	Tia1	chr6	protein_coding	cytotoxic granule-associated RNA binding protein 1
known_NIR_16136	chr6	86395914	86397306	+	86395914;86396115	86396083;86397306	ES	ENSMUST00000095754.10	known	0.25	1	3.0	1	3;3	n	0.57	2	1.5	2	2;1	n	0.46	3	3.5	3	4;3	y	0.00	0	2.5	0	3;2	n	0.13	1	6.5	1	5;8	n	0.57	6	4.5	6	3;6	y	0.67	4	2.0	4	3;1	n	0.22	2	7.0	2	10;4	y	1.00	2	0.0	2	0;0	n	0.50	4	4.0	4	6;2	y	0.29	2	5.0	2	6;4	y	0.33	1	2.0	1	2;2	n	ENSMUSG00000071337.12	Tia1	chr6	protein_coding	cytotoxic granule-associated RNA binding protein 1
known_NIR_16137	chr6	86396115	86397306	+	86396794	86397306	5pMXE	ENSMUST00000147104.8	known	0.38	3	5	3	5	n	1.00	1	0	1	0	n	1.00	3	0	3	0	n	0.40	2	3	2	3	n	0.80	8	2	8	2	y	0.86	6	1	6	1	n	0.50	1	1	1	1	n	1.00	4	0	4	0	n	-	-	-	-	-	-	1.00	2	0	2	0	n	1.00	4	0	4	0	n	1.00	2	0	2	0	n	ENSMUSG00000071337.12	Tia1	chr6	protein_coding	cytotoxic granule-associated RNA binding protein 1
known_NIR_16138	chr6	86397393	86401327	+	86397393	86400588	A3SS	ENSMUST00000134142.8	known	0.75	6	2	6	2	n	0.40	2	3	2	3	n	0.62	10	6	10	6	y	0.50	3	3	3	3	n	0.40	12	18	12	18	y	0.70	7	3	7	3	y	0.50	4	4	4	4	n	0.67	2	1	2	1	n	0.57	4	3	4	3	n	0.64	9	5	9	5	y	0.33	1	2	1	2	n	0.67	6	3	6	3	n	ENSMUSG00000071337.12	Tia1	chr6	protein_coding	cytotoxic granule-associated RNA binding protein 1
known_NIR_16139	chr6	86397393;86400653	86400588;86401327	+	86397393	86401327	cassetteExon	ENSMUST00000095754.10	known	0.25	2.0	6	2;2	6	y	0.64	3.5	2	3;4	2	n	0.23	3.0	10	6;0	10	n	0.50	3.0	3	3;3	3	n	0.55	14.5	12	18;11	12	y	0.30	3.0	7	3;3	7	y	0.53	4.5	4	4;5	4	y	0.20	0.5	2	1;0	2	n	0.53	4.5	4	3;6	4	y	0.28	3.5	9	5;2	9	y	0.71	2.5	1	2;3	1	n	0.29	2.5	6	3;2	6	y	ENSMUSG00000071337.12	Tia1	chr6	protein_coding	cytotoxic granule-associated RNA binding protein 1
known_NIR_16140	chr6	86402185	86402432	+	86402052	86402432	A5SS	ENSMUST00000095754.10	known	0.33	2	4	2	4	n	0.33	4	8	4	8	y	0.00	0	16	0	16	n	0.29	5	12	5	12	y	0.14	2	12	2	12	y	0.19	3	13	3	13	y	0.25	5	15	5	15	y	0.50	4	4	4	4	n	0.67	2	1	2	1	n	0.15	2	11	2	11	y	0.14	2	12	2	12	y	0.00	0	6	0	6	n	ENSMUSG00000071337.12	Tia1	chr6	protein_coding	cytotoxic granule-associated RNA binding protein 1
known_NIR_16141	chr6	86402727	86403549	+	86402727	86407223	A3SS	ENSMUST00000130967.8	known	1.00	11	0	11	0	n	1.00	17	0	17	0	n	0.94	16	1	16	1	n	1.00	15	0	15	0	n	0.89	16	2	16	2	y	1.00	4	0	4	0	n	1.00	29	0	29	0	n	1.00	20	0	20	0	n	1.00	13	0	13	0	n	0.83	10	2	10	2	y	0.88	15	2	15	2	y	1.00	20	0	20	0	n	ENSMUSG00000071337.12	Tia1	chr6	protein_coding	cytotoxic granule-associated RNA binding protein 1
known_NIR_16142	chr6	86404800	86407223	+	86402727	86407223	A5SS	ENSMUST00000130967.8	known	1.00	10	0	10	0	n	1.00	6	0	6	0	n	0.95	21	1	21	1	n	1.00	11	0	11	0	n	0.91	21	2	21	2	y	1.00	12	0	12	0	n	1.00	14	0	14	0	n	1.00	11	0	11	0	n	1.00	9	0	9	0	n	0.85	11	2	11	2	y	0.88	14	2	14	2	y	1.00	11	0	11	0	n	ENSMUSG00000071337.12	Tia1	chr6	protein_coding	cytotoxic granule-associated RNA binding protein 1
known_NIR_16143	chr6	86415469	86420709	+	86407395	86420709	A5SS	ENSMUST00000204137.2	known	1.00	5	0	5	0	n	-	-	-	-	-	-	1.00	2	0	2	0	n	1.00	4	0	4	0	n	1.00	7	0	7	0	n	1.00	1	0	1	0	n	1.00	6	0	6	0	n	-	-	-	-	-	-	1.00	5	0	5	0	n	0.86	12	2	12	2	y	1.00	3	0	3	0	n	1.00	4	0	4	0	n	ENSMUSG00000107539.2	Gm44790	chr6	protein_coding	predicted gene 44790
known_NIR_16144	chr6	86415829	86420709	+	86407395	86420709	A5SS	ENSMUST00000204137.2	known	1.00	2	0	2	0	n	1.00	5	0	5	0	n	1.00	8	0	8	0	n	1.00	5	0	5	0	n	1.00	5	0	5	0	n	1.00	5	0	5	0	n	1.00	2	0	2	0	n	1.00	3	0	3	0	n	1.00	5	0	5	0	n	0.87	13	2	13	2	y	1.00	2	0	2	0	n	1.00	2	0	2	0	n	ENSMUSG00000107539.2	Gm44790	chr6	protein_coding	predicted gene 44790
known_NIR_16145	chr6	86415829	86420709	+	86415465	86420709	A5SS	ENSMUST00000203568.3	known	1.00	2	0	2	0	n	1.00	5	0	5	0	n	0.73	8	3	8	3	y	1.00	5	0	5	0	n	1.00	5	0	5	0	n	1.00	5	0	5	0	n	1.00	2	0	2	0	n	1.00	3	0	3	0	n	0.71	5	2	5	2	n	1.00	13	0	13	0	n	0.67	2	1	2	1	n	0.67	2	1	2	1	n	ENSMUSG00000046679.17	C87436	chr6	protein_coding	expressed sequence C87436
known_NIR_16146	chr6	86415829	86420709	+	86415469	86420709	A5SS	ENSMUST00000050497.14	known	0.29	2	5	2	5	n	1.00	5	0	5	0	n	0.80	8	2	8	2	y	0.56	5	4	5	4	n	0.42	5	7	5	7	y	0.83	5	1	5	1	n	0.25	2	6	2	6	n	1.00	3	0	3	0	n	0.50	5	5	5	5	y	0.52	13	12	13	12	y	0.40	2	3	2	3	n	0.33	2	4	2	4	n	ENSMUSG00000046679.17	C87436	chr6	protein_coding	expressed sequence C87436
known_NIR_16147	chr6	86415829	86420709	+	86416240	86420709	A5SS	ENSMUST00000113698.8	known	0.33	2	4	2	4	n	0.71	5	2	5	2	n	0.47	8	9	8	9	y	0.36	5	9	5	9	y	0.36	5	9	5	9	y	0.38	5	8	5	8	y	0.33	2	4	2	4	n	0.30	3	7	3	7	y	0.56	5	4	5	4	n	0.45	13	16	13	16	y	0.20	2	8	2	8	y	0.18	2	9	2	9	y	ENSMUSG00000046679.17	C87436	chr6	protein_coding	expressed sequence C87436
known_NIR_16148	chr6	86415829;86416240	86416106;86420709	+	86415829	86420709	cassetteExon	ENSMUST00000141972.8	known	0.56	2.5	2	1;4	2	n	0.38	3.0	5	4;2	5	y	0.36	4.5	8	0;9	8	n	0.47	4.5	5	0;9	5	n	0.47	4.5	5	0;9	5	n	0.47	4.5	5	1;8	5	n	0.71	5.0	2	6;4	2	y	0.57	4.0	3	1;7	3	n	0.29	2.0	5	0;4	5	n	0.38	8.0	13	0;16	13	n	0.71	5.0	2	2;8	2	y	0.78	7.0	2	5;9	2	y	ENSMUSG00000046679.17	C87436	chr6	protein_coding	expressed sequence C87436
known_NIR_16149	chr6	86416240	86420709	+	86407395	86420709	A5SS	ENSMUST00000204137.2	known	1.00	4	0	4	0	n	1.00	2	0	2	0	n	1.00	9	0	9	0	n	1.00	9	0	9	0	n	1.00	9	0	9	0	n	1.00	8	0	8	0	n	1.00	4	0	4	0	n	1.00	7	0	7	0	n	1.00	4	0	4	0	n	0.89	16	2	16	2	y	1.00	8	0	8	0	n	1.00	9	0	9	0	n	ENSMUSG00000107539.2	Gm44790	chr6	protein_coding	predicted gene 44790
known_NIR_16150	chr6	86416240	86420709	+	86415465	86420709	A5SS	ENSMUST00000203568.3	known	1.00	4	0	4	0	n	1.00	2	0	2	0	n	0.75	9	3	9	3	y	1.00	9	0	9	0	n	1.00	9	0	9	0	n	1.00	8	0	8	0	n	1.00	4	0	4	0	n	1.00	7	0	7	0	n	0.67	4	2	4	2	n	1.00	16	0	16	0	n	0.89	8	1	8	1	n	0.90	9	1	9	1	n	ENSMUSG00000046679.17	C87436	chr6	protein_coding	expressed sequence C87436
known_NIR_16151	chr6	86416240	86420709	+	86415469	86420709	A5SS	ENSMUST00000050497.14	known	0.44	4	5	4	5	n	1.00	2	0	2	0	n	0.82	9	2	9	2	y	0.69	9	4	9	4	y	0.56	9	7	9	7	y	0.89	8	1	8	1	n	0.40	4	6	4	6	y	1.00	7	0	7	0	n	0.44	4	5	4	5	n	0.57	16	12	16	12	y	0.73	8	3	8	3	y	0.69	9	4	9	4	y	ENSMUSG00000046679.17	C87436	chr6	protein_coding	expressed sequence C87436
known_NIR_16152	chr6	86423250	86424323	+	86423250	86424293	A3SS	ENSMUST00000050497.14	known	0.17	4	20	4	20	y	0.29	7	17	7	17	y	0.15	4	22	4	22	y	0.18	3	14	3	14	y	0.07	2	27	2	27	y	0.14	2	12	2	12	y	0.28	5	13	5	13	y	0.20	2	8	2	8	y	0.27	4	11	4	11	y	0.22	6	21	6	21	y	0.38	5	8	5	8	y	0.19	6	25	6	25	y	ENSMUSG00000046679.17	C87436	chr6	protein_coding	expressed sequence C87436
known_NIR_16153	chr6	86430695;86431295	86431242;86434798	+	86430695	86434798	cassetteExon	ENSMUST00000050497.14	known	0.06	1.5	24	3;0	24	n	0.00	0.0	30	0;0	30	n	0.02	0.5	27	1;0	27	n	0.09	1.5	15	0;3	15	n	0.10	2.5	23	2;3	23	y	0.04	0.5	11	0;1	11	n	0.00	0.0	35	0;0	35	n	0.03	0.5	18	1;0	18	n	0.00	0.0	19	0;0	19	n	0.01	0.5	36	1;0	36	n	0.10	3.0	26	4;2	26	y	0.02	0.5	24	0;1	24	n	ENSMUSG00000046679.17	C87436	chr6	protein_coding	expressed sequence C87436
known_NIR_16154	chr6	86504513	86504873	+	86504415	86504873	A5SS	ENSMUST00000204047.3	known	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.17	2	10	2	10	y	0.43	3	4	3	4	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	25	0	25	n	0.00	0	8	0	8	n	0.05	1	19	1	19	n	0.10	2	19	2	19	y	0.00	0	13	0	13	n	0.13	3	20	3	20	y	ENSMUSG00000097048.8	1600020E01Rik	chr6	lncRNA	RIKEN cDNA 1600020E01 gene
known_NIR_16155	chr6	86659958	86661207	-	86659958	86661429	A5SS	ENSMUST00000001186.11	known	0.15	10	58	10	58	y	0.11	4	31	4	31	y	0.00	0	83	0	83	n	0.05	3	59	3	59	y	0.02	2	89	2	89	y	0.10	5	44	5	44	y	0.05	5	86	5	86	y	0.05	2	39	2	39	y	0.11	7	55	7	55	y	0.06	4	59	4	59	y	0.05	3	55	3	55	y	0.09	6	62	6	62	y	ENSMUSG00000001158.14	Snrnp27	chr6	protein_coding	small nuclear ribonucleoprotein 27 (U4/U6.U5)
known_NIR_16156	chr6	86725962	86727210	-	86725962	86728045	A5SS	ENSMUST00000113675.8	known	0.01	1	100	1	100	n	0.01	1	111	1	111	n	0.02	4	171	4	171	y	0.00	0	100	0	100	n	0.02	3	196	3	196	y	0.06	6	98	6	98	y	0.02	3	173	3	173	y	0.00	0	95	0	95	n	0.00	0	94	0	94	n	0.01	1	170	1	170	n	0.00	0	103	0	103	n	0.02	2	114	2	114	y	ENSMUSG00000029994.18	Anxa4	chr6	protein_coding	annexin A4
known_NIR_16157	chr6	86725962	86728045	-	86725962;86727895	86727210;86728045	ES	ENSMUST00000127152.9	known	0.98	100	2.0	100	1;3	n	1.00	111	0.5	111	1;0	n	0.99	171	2.0	171	4;0	n	1.00	100	0.0	100	0;0	n	0.99	196	1.5	196	3;0	n	0.97	98	3.5	98	6;1	n	0.98	173	3.0	173	3;3	y	1.00	95	0.0	95	0;0	n	1.00	94	0.0	94	0;0	n	1.00	170	0.5	170	1;0	n	0.99	103	1.0	103	0;2	n	0.99	114	1.5	114	2;1	n	ENSMUSG00000029994.18	Anxa4	chr6	protein_coding	annexin A4
known_NIR_16158	chr6	86727895	86728045	-	86725962	86728045	A3SS	ENSMUST00000113675.8	known	0.03	3	100	3	100	y	0.00	0	111	0	111	n	0.00	0	171	0	171	n	0.00	0	100	0	100	n	0.00	0	196	0	196	n	0.01	1	98	1	98	n	0.02	3	173	3	173	y	0.00	0	95	0	95	n	0.00	0	94	0	94	n	0.00	0	170	0	170	n	0.02	2	103	2	103	y	0.01	1	114	1	114	n	ENSMUSG00000029994.18	Anxa4	chr6	protein_coding	annexin A4
known_NIR_16159	chr6	86730875	86731901	-	86730875	86731835	A5SS	ENSMUST00000113675.8	known	0.00	0	96	0	96	n	0.00	0	74	0	74	n	0.01	2	144	2	144	y	0.00	0	80	0	80	n	0.00	0	129	0	129	n	0.00	0	93	0	93	n	0.00	0	144	0	144	n	0.00	0	119	0	119	n	0.00	0	78	0	78	n	0.00	0	145	0	145	n	0.00	0	112	0	112	n	0.00	0	120	0	120	n	ENSMUSG00000029994.18	Anxa4	chr6	protein_coding	annexin A4
known_NIR_16160	chr6	86742789;86751996	86751931;86770491	-	86742789	86770491	cassetteExon	ENSMUST00000001187.15	known	0.08	4.0	46	6;2	46	y	0.10	3.5	31	6;1	31	n	0.16	8.0	41	14;2	41	y	0.04	1.5	41	3;0	41	n	0.01	0.5	60	1;0	60	n	0.11	2.0	17	3;1	17	n	0.11	5.5	46	7;4	46	y	0.07	3.0	37	4;2	37	y	0.13	5.5	36	10;1	36	n	0.12	8.0	59	13;3	59	y	0.07	3.5	44	7;0	44	n	0.07	4.5	58	9;0	58	n	ENSMUSG00000029994.18	Anxa4	chr6	protein_coding	annexin A4
known_NIR_16161	chr6	86742789;86752030	86751931;86770491	-	86742789	86770491	cassetteExon	ENSMUST00000001187.15	known	0.07	3.5	46	6;1	46	n	0.09	3.0	31	6;0	31	n	0.16	8.0	41	14;2	41	y	0.06	2.5	41	3;2	41	y	0.01	0.5	60	1;0	60	n	0.08	1.5	17	3;0	17	n	0.09	4.5	46	7;2	46	y	0.05	2.0	37	4;0	37	n	0.14	6.0	36	10;2	36	y	0.13	8.5	59	13;4	59	y	0.10	5.0	44	7;3	44	y	0.08	5.0	58	9;1	58	n	ENSMUSG00000029994.18	Anxa4	chr6	protein_coding	annexin A4
known_NIR_16162	chr6	86933554	86940975	+	86933554;86936256	86936014;86940975	ES	ENSMUST00000089519.13	known	0.22	1	3.5	1	6;1	n	0.00	0	1.0	0	0;2	n	0.54	7	6.0	7	10;2	y	0.25	1	3.0	1	5;1	n	0.63	6	3.5	6	3;4	y	0.67	4	2.0	4	2;2	n	0.78	7	2.0	7	3;1	n	0.62	4	2.5	4	2;3	n	0.73	4	1.5	4	0;3	n	0.00	0	4.0	0	3;5	n	0.22	1	3.5	1	6;1	n	0.27	2	5.5	2	9;2	y	ENSMUSG00000057230.15	Aak1	chr6	protein_coding	AP2 associated kinase 1
known_NIR_16163	chr6	86936256	86940978	+	86936256	86940975	A3SS	ENSMUST00000089519.13	known	0.50	1	1	1	1	n	0.50	2	2	2	2	n	0.71	5	2	5	2	n	0.75	3	1	3	1	n	0.60	6	4	6	4	y	0.50	2	2	2	2	n	0.67	2	1	2	1	n	0.50	3	3	3	3	n	0.40	2	3	2	3	n	0.29	2	5	2	5	n	0.50	1	1	1	1	n	0.50	2	2	2	2	n	ENSMUSG00000057230.15	Aak1	chr6	protein_coding	AP2 associated kinase 1
known_NIR_16164	chr6	86944355;86948068	86947973;86972822	+	86944355	86972822	cassetteExon	ENSMUST00000204613.2	known	0.00	0.0	2	0;0	2	n	0.00	0.0	2	0;0	2	n	0.22	2.0	7	2;2	7	y	0.09	0.5	5	1;0	5	n	0.08	0.5	6	1;0	6	n	0.67	2.0	1	1;3	1	n	0.00	0.0	3	0;0	3	n	0.00	0.0	5	0;0	5	n	0.14	1.0	6	1;1	6	n	0.14	0.5	3	1;0	3	n	1.00	0.5	0	1;0	0	n	0.00	0.0	2	0;0	2	n	ENSMUSG00000057230.15	Aak1	chr6	protein_coding	AP2 associated kinase 1
known_NIR_16165	chr6	86987165	86989889	+	86986941	86989889	A5SS	ENSMUST00000120240.8	known	0.04	4	92	4	92	y	0.02	2	100	2	100	y	0.07	5	63	5	63	y	0.03	4	130	4	130	y	0.00	0	100	0	100	n	0.00	0	65	0	65	n	0.05	6	123	6	123	y	0.04	2	52	2	52	y	0.06	5	80	5	80	y	0.03	5	157	5	157	y	0.03	4	145	4	145	y	0.02	2	127	2	127	y	ENSMUSG00000029993.17	Nfu1	chr6	protein_coding	NFU1 iron-sulfur cluster scaffold
known_NIR_16166	chr6	86992683;86993376	86993158;86996347	+	86992683	86996347	cassetteExon	ENSMUST00000120240.8	known	0.02	3.5	145	2;5	145	y	0.03	4.0	143	5;3	143	y	0.10	9.5	89	11;8	89	y	0.03	5.0	179	6;4	179	y	0.04	6.0	158	4;8	158	y	0.07	4.0	54	2;6	54	y	0.04	6.5	167	4;9	167	y	0.11	7.0	58	7;7	58	y	0.05	7.0	141	6;8	141	y	0.03	5.0	194	2;8	194	y	0.03	5.0	151	6;4	151	y	0.01	2.0	166	2;2	166	y	ENSMUSG00000029993.17	Nfu1	chr6	protein_coding	NFU1 iron-sulfur cluster scaffold
known_NIR_16167	chr6	86997821	87000110	+	86997824	87000110	A5SS	ENSMUST00000120240.8	known	0.91	139	13	139	13	y	0.90	124	14	124	14	y	0.92	91	8	91	8	y	0.86	122	20	122	20	y	0.85	117	21	117	21	y	0.86	59	10	59	10	y	0.88	146	20	146	20	y	0.85	55	10	55	10	y	0.83	94	19	94	19	y	0.84	180	35	180	35	y	0.89	158	20	158	20	y	0.88	151	20	151	20	y	ENSMUSG00000029993.17	Nfu1	chr6	protein_coding	NFU1 iron-sulfur cluster scaffold
known_NIR_16168	chr6	87037582;87037814	87037767;87040787	+	87037582	87040787	cassetteExon	ENSMUST00000113658.8	known	0.00	0.0	9	0;0	9	n	0.00	0.0	8	0;0	8	n	0.00	0.0	55	0;0	55	n	0.00	0.0	10	0;0	10	n	0.00	0.0	21	0;0	21	n	0.00	0.0	17	0;0	17	n	0.16	2.5	13	3;2	13	y	0.00	0.0	15	0;0	15	n	0.00	0.0	5	0;0	5	n	0.00	0.0	10	0;0	10	n	0.00	0.0	3	0;0	3	n	0.00	0.0	11	0;0	11	n	ENSMUSG00000029992.15	Gfpt1	chr6	protein_coding	glutamine fructose-6-phosphate transaminase 1
known_NIR_16169	chr6	8758458	8778373	-	8758458	8778072	5pMXE	ENSMUST00000115519.8	known	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.21	3	11	3	11	y	-	-	-	-	-	-	0.00	0	8	0	8	n	0.18	2	9	2	9	y	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000062995.13	Ica1	chr6	protein_coding	islet cell autoantigen 1
known_NIR_16170	chr6	87771779	87788329	-	87771779	87786601	5pMXE	ENSMUST00000032134.9	known	0.91	86	9	86	9	y	0.86	57	9	57	9	y	0.96	79	3	79	3	y	0.72	125	48	125	48	y	0.88	128	17	128	17	y	0.89	50	6	50	6	y	0.80	94	23	94	23	y	0.96	71	3	71	3	y	0.84	89	17	89	17	y	0.71	150	60	150	60	y	0.71	96	39	96	39	y	0.86	89	14	89	14	y	ENSMUSG00000030055.17	Rab43	chr6	protein_coding	RAB43, member RAS oncogene family
known_NIR_16171	chr6	87802466	87804566	-	87802470	87804566	A3SS	ENSMUST00000204419.2	known	0.00	0	54	0	54	n	0.05	2	35	2	35	y	0.00	0	50	0	50	n	0.00	0	63	0	63	n	0.00	0	63	0	63	n	0.00	0	51	0	51	n	0.00	0	41	0	41	n	0.00	0	29	0	29	n	0.00	0	46	0	46	n	0.00	0	52	0	52	n	0.02	1	59	1	59	n	0.00	0	62	0	62	n	ENSMUSG00000107928.2	Gm45140	chr6	protein_coding	predicted gene 45140
known_NIR_16172	chr6	87810708	87811410	-	87810666	87811410	A3SS	ENSMUST00000204419.2	known	0.00	0	51	0	51	n	0.00	0	49	0	49	n	0.00	0	44	0	44	n	0.00	0	43	0	43	n	0.04	2	54	2	54	y	0.00	0	34	0	34	n	0.02	1	55	1	55	n	0.00	0	20	0	20	n	0.00	0	50	0	50	n	0.00	0	67	0	67	n	0.00	0	51	0	51	n	0.00	0	55	0	55	n	ENSMUSG00000107928.2	Gm45140	chr6	protein_coding	predicted gene 45140
known_NIR_16173	chr6	87822305	87822447	-	87822302	87822447	A3SS	ENSMUST00000204653.3	known	0.23	143	484	143	484	y	0.25	116	345	116	345	y	0.31	164	360	164	360	y	0.22	142	500	142	500	y	0.27	227	627	227	627	y	0.27	91	240	91	240	y	0.24	214	671	214	671	y	0.25	108	319	108	319	y	0.25	146	436	146	436	y	0.26	236	669	236	669	y	0.25	182	542	182	542	y	0.27	239	637	239	637	y	ENSMUSG00000030057.16	Cnbp	chr6	protein_coding	cellular nucleic acid binding protein
known_NIR_16174	chr6	87822539	87822656	-	87822539	87822638	A5SS	ENSMUST00000204653.3	known	0.05	20	360	20	360	y	0.05	16	285	16	285	y	0.04	12	296	12	296	y	0.06	23	385	23	385	y	0.03	20	557	20	557	y	0.04	8	184	8	184	y	0.06	36	539	36	539	y	0.05	13	234	13	234	y	0.05	17	333	17	333	y	0.06	36	586	36	586	y	0.05	25	445	25	445	y	0.08	41	473	41	473	y	ENSMUSG00000030057.16	Cnbp	chr6	protein_coding	cellular nucleic acid binding protein
known_NIR_16175	chr6	87822539	87822659	-	87822539	87822638	A5SS	ENSMUST00000204653.3	known	0.38	223	360	223	360	y	0.35	155	285	155	285	y	0.42	216	296	216	296	y	0.39	247	385	247	385	y	0.35	303	557	303	557	y	0.38	111	184	111	184	y	0.37	310	539	310	539	y	0.36	134	234	134	234	y	0.38	202	333	202	333	y	0.34	300	586	300	586	y	0.35	243	445	243	445	y	0.40	309	473	309	473	y	ENSMUSG00000030057.16	Cnbp	chr6	protein_coding	cellular nucleic acid binding protein
known_NIR_16176	chr6	87822539	87822659	-	87822539	87822656	A5SS	ENSMUST00000204890.3	known	0.92	223	20	223	20	y	0.91	155	16	155	16	y	0.95	216	12	216	12	y	0.91	247	23	247	23	y	0.94	303	20	303	20	y	0.93	111	8	111	8	y	0.90	310	36	310	36	y	0.91	134	13	134	13	y	0.92	202	17	202	17	y	0.89	300	36	300	36	y	0.91	243	25	243	25	y	0.88	309	41	309	41	y	ENSMUSG00000030057.16	Cnbp	chr6	protein_coding	cellular nucleic acid binding protein
known_NIR_16177	chr6	87822775;87826091	87825997;87827886	-	87822775	87827886	cassetteExon	ENSMUST00000204653.3	known	0.01	3.0	495	2;4	495	y	0.01	3.0	437	4;2	437	y	0.01	3.0	449	2;4	449	y	0.00	1.0	619	1;1	619	n	0.00	3.5	710	3;4	710	y	0.00	1.0	266	2;0	266	n	0.00	2.5	729	3;2	729	y	0.00	0.5	309	1;0	309	n	0.00	2.5	502	1;4	502	n	0.01	4.0	736	3;5	736	y	0.01	3.0	530	2;4	530	y	0.00	2.0	671	2;2	671	y	ENSMUSG00000030057.16	Cnbp	chr6	protein_coding	cellular nucleic acid binding protein
known_NIR_16178	chr6	87865054	87866639	+	87865054;87866105	87866053;87866639	ES	ENSMUST00000113607.10	known	0.02	1	63.5	1	65;62	n	0.00	0	55.0	0	52;58	n	0.00	0	182.0	0	177;187	n	0.00	0	81.5	0	92;71	n	0.00	0	109.0	0	112;106	n	0.00	0	102.0	0	101;103	n	0.03	2	67.5	2	65;70	y	0.00	0	124.0	0	125;123	n	0.00	0	37.5	0	31;44	n	0.00	0	75.0	0	72;78	n	0.00	0	67.0	0	75;59	n	0.00	0	73.5	0	70;77	n	ENSMUSG00000030058.18	Copg1	chr6	protein_coding	coatomer protein complex, subunit gamma 1
known_NIR_16179	chr6	87882249	87884360	+	87882249	87884355	A3SS	ENSMUST00000113607.10	known	0.00	0	172	0	172	n	0.00	0	154	0	154	n	0.00	0	381	0	381	n	0.00	0	133	0	133	n	0.02	4	246	4	246	y	0.00	0	219	0	219	n	0.02	3	169	3	169	y	0.02	3	180	3	180	y	0.00	0	133	0	133	n	0.00	0	186	0	186	n	0.02	3	156	3	156	y	0.02	3	157	3	157	y	ENSMUSG00000030058.18	Copg1	chr6	protein_coding	coatomer protein complex, subunit gamma 1
known_NIR_16180	chr6	87902792	87910224	+	87902792	87909845	3pMXE	ENSMUST00000204614.3	known	1.00	17	0	17	0	n	1.00	34	0	34	0	n	1.00	50	0	50	0	n	1.00	27	0	27	0	n	0.95	38	2	38	2	y	1.00	18	0	18	0	n	0.96	24	1	24	1	n	1.00	19	0	19	0	n	1.00	18	0	18	0	n	1.00	43	0	43	0	n	1.00	32	0	32	0	n	1.00	27	0	27	0	n	ENSMUSG00000030060.15	Hmces	chr6	protein_coding	5-hydroxymethylcytosine (hmC) binding, ES cell specific
known_NIR_16181	chr6	87902792;87909964	87909841;87910224	+	87902792	87910224	cassetteExon	ENSMUST00000032141.14	known	0.13	2.5	17	2;3	17	y	0.08	3.0	34	1;5	34	n	0.09	5.0	50	2;8	50	y	0.10	3.0	27	1;5	27	n	0.14	6.0	38	4;8	38	y	0.08	1.5	18	0;3	18	n	0.09	2.5	24	0;5	24	n	0.03	0.5	19	0;1	19	n	0.05	1.0	18	0;2	18	n	0.08	3.5	43	3;4	43	y	0.00	0.0	32	0;0	32	n	0.00	0.0	27	0;0	27	n	ENSMUSG00000030060.15	Hmces	chr6	protein_coding	5-hydroxymethylcytosine (hmC) binding, ES cell specific
known_NIR_16182	chr6	87902792;87909964	87909845;87910224	+	87902792	87910224	cassetteExon	ENSMUST00000032141.14	known	0.08	1.5	17	0;3	17	n	0.07	2.5	34	0;5	34	n	0.07	4.0	50	0;8	50	n	0.08	2.5	27	0;5	27	n	0.12	5.0	38	2;8	38	y	0.08	1.5	18	0;3	18	n	0.11	3.0	24	1;5	24	n	0.03	0.5	19	0;1	19	n	0.05	1.0	18	0;2	18	n	0.04	2.0	43	0;4	43	n	0.00	0.0	32	0;0	32	n	0.00	0.0	27	0;0	27	n	ENSMUSG00000030060.15	Hmces	chr6	protein_coding	5-hydroxymethylcytosine (hmC) binding, ES cell specific
known_NIR_16183	chr6	87990680	87991568	-	87990680	88022055	A5SS	ENSMUST00000113600.10	known	0.00	1	440	1	440	n	0.01	2	295	2	295	y	0.00	2	561	2	561	y	0.00	2	423	2	423	y	0.00	1	534	1	534	n	0.00	1	307	1	307	n	0.00	1	493	1	493	n	0.01	3	322	3	322	y	0.00	0	303	0	303	n	0.01	3	508	3	508	y	0.00	1	351	1	351	n	0.00	0	509	0	509	n	ENSMUSG00000079477.10	Rab7	chr6	protein_coding	RAB7, member RAS oncogene family
known_NIR_16184	chr6	87990680;87991702	87991568;87992614	-	87990680	87992614	cassetteExon	ENSMUST00000113597.8	known	0.03	0.5	15	1;0	15	n	0.08	1.0	12	2;0	12	n	0.09	2.0	20	2;2	20	y	0.09	1.0	10	2;0	10	n	0.03	0.5	19	1;0	19	n	0.11	0.5	4	1;0	4	n	0.05	0.5	10	1;0	10	n	0.16	1.5	8	3;0	8	n	0.00	0.0	10	0;0	10	n	0.08	1.5	18	3;0	18	n	0.05	0.5	10	1;0	10	n	0.00	0.0	21	0;0	21	n	ENSMUSG00000079477.10	Rab7	chr6	protein_coding	RAB7, member RAS oncogene family
known_NIR_16185	chr6	87990680;87992700	87992614;88022055	-	87990680	88022055	cassetteExon	ENSMUST00000113600.10	known	0.03	15.0	440	15;15	440	y	0.03	8.0	295	12;4	295	y	0.03	18.5	561	20;17	561	y	0.04	16.0	423	10;22	423	y	0.04	19.5	534	19;20	534	y	0.02	6.5	307	4;9	307	y	0.02	10.5	493	10;11	493	y	0.03	9.5	322	8;11	322	y	0.03	10.0	303	10;10	303	y	0.03	17.0	508	18;16	508	y	0.02	8.5	351	10;7	351	y	0.03	15.5	509	21;10	509	y	ENSMUSG00000079477.10	Rab7	chr6	protein_coding	RAB7, member RAS oncogene family
known_NIR_16186	chr6	88258687	88274559	-	88258687	88332465	A5SS	ENSMUST00000203213.3	known	0.93	69	5	69	5	y	0.93	79	6	79	6	y	0.95	73	4	73	4	y	0.86	70	11	70	11	y	0.95	97	5	97	5	y	0.98	46	1	46	1	n	0.93	53	4	53	4	y	0.96	43	2	43	2	y	0.88	52	7	52	7	y	0.94	99	6	99	6	y	0.94	72	5	72	5	y	0.96	106	4	106	4	y	ENSMUSG00000033216.10	Eefsec	chr6	protein_coding	eukaryotic elongation factor, selenocysteine-tRNA-specific
known_NIR_16187	chr6	88258687	88332465	-	88258687;88275218	88274559;88332465	ES	ENSMUST00000165242.4	known	0.08	5	58.5	5	69;48	y	0.09	6	63.0	6	79;47	y	0.07	4	57.5	4	73;42	y	0.15	11	61.5	11	70;53	y	0.06	5	78.5	5	97;60	y	0.03	1	34.0	1	46;22	n	0.08	4	48.5	4	53;44	y	0.06	2	30.5	2	43;18	y	0.14	7	43.0	7	52;34	y	0.06	6	91.5	6	99;84	y	0.07	5	62.0	5	72;52	y	0.04	4	85.5	4	106;65	y	ENSMUSG00000033216.10	Eefsec	chr6	protein_coding	eukaryotic elongation factor, selenocysteine-tRNA-specific
known_NIR_16188	chr6	88275218	88332465	-	88258687	88332465	A3SS	ENSMUST00000203213.3	known	0.91	48	5	48	5	y	0.89	47	6	47	6	y	0.91	42	4	42	4	y	0.83	53	11	53	11	y	0.92	60	5	60	5	y	0.96	22	1	22	1	n	0.92	44	4	44	4	y	0.90	18	2	18	2	y	0.83	34	7	34	7	y	0.93	84	6	84	6	y	0.91	52	5	52	5	y	0.94	65	4	65	4	y	ENSMUSG00000033216.10	Eefsec	chr6	protein_coding	eukaryotic elongation factor, selenocysteine-tRNA-specific
known_NIR_16189	chr6	88335624	88423188	-	88335624	88353186	A5SS&ES	ENSMUST00000203213.3	known	0.00	0	51	0	51	n	0.02	1	54	1	54	n	0.00	0	59	0	59	n	0.04	3	72	3	72	y	0.00	0	66	0	66	n	0.00	0	41	0	41	n	0.00	0	48	0	48	n	0.00	0	35	0	35	n	0.00	0	71	0	71	n	0.01	1	70	1	70	n	0.00	0	73	0	73	n	0.01	1	74	1	74	n	ENSMUSG00000033216.10	Eefsec	chr6	protein_coding	eukaryotic elongation factor, selenocysteine-tRNA-specific
known_NIR_16190	chr6	88335624	88423188	-	88335624;88353393	88353186;88423188	ES	ENSMUST00000165242.4	known	0.00	0	54.0	0	51;57	n	0.02	1	45.0	1	54;36	n	0.00	0	53.5	0	59;48	n	0.04	3	69.0	3	72;66	y	0.00	0	61.0	0	66;56	n	0.00	0	38.5	0	41;36	n	0.00	0	55.0	0	48;62	n	0.00	0	38.5	0	35;42	n	0.00	0	54.0	0	71;37	n	0.01	1	72.0	1	70;74	n	0.00	0	69.5	0	73;66	n	0.02	1	62.5	1	74;51	n	ENSMUSG00000033216.10	Eefsec	chr6	protein_coding	eukaryotic elongation factor, selenocysteine-tRNA-specific
known_NIR_16191	chr6	88353393	88423447	-	88353393	88423188	A5SS	ENSMUST00000165242.4	known	0.00	0	57	0	57	n	0.00	0	36	0	36	n	0.00	0	48	0	48	n	0.00	0	66	0	66	n	0.03	2	56	2	56	y	0.00	0	36	0	36	n	0.00	0	62	0	62	n	0.00	0	42	0	42	n	0.00	0	37	0	37	n	0.01	1	74	1	74	n	0.00	0	66	0	66	n	0.00	0	51	0	51	n	ENSMUSG00000033216.10	Eefsec	chr6	protein_coding	eukaryotic elongation factor, selenocysteine-tRNA-specific
known_NIR_16192	chr6	88492551;88494774	88494694;88495353	-	88492551	88495353	cassetteExon	ENSMUST00000032168.7	known	0.00	0.5	263	0;1	263	n	0.00	0.0	200	0;0	200	n	0.00	0.0	865	0;0	865	n	0.00	0.0	335	0;0	335	n	0.00	0.0	614	0;0	614	n	0.00	2.0	526	1;3	526	n	0.00	0.0	313	0;0	313	n	0.00	2.0	509	2;2	509	y	0.00	0.0	205	0;0	205	n	0.00	0.5	318	1;0	318	n	0.00	0.0	254	0;0	254	n	0.00	0.0	350	0;0	350	n	ENSMUSG00000030082.15	Sec61a1	chr6	protein_coding	Sec61 alpha 1 subunit (S. cerevisiae)
known_NIR_16193	chr6	88702160	88702683	+	88701553	88702683	A5SS	ENSMUST00000113585.9	known	0.17	9	43	9	43	y	0.06	4	58	4	58	y	0.16	6	31	6	31	y	0.08	9	109	9	109	y	0.20	21	84	21	84	y	0.04	1	26	1	26	n	0.10	9	82	9	82	y	0.11	6	47	6	47	y	0.20	8	33	8	33	y	0.10	13	121	13	121	y	0.10	9	82	9	82	y	0.07	4	50	4	50	y	ENSMUSG00000033174.18	Mgll	chr6	protein_coding	monoglyceride lipase
known_NIR_16194	chr6	88702827	88784993	+	88702827;88741684	88741578;88784993	ES	ENSMUST00000113585.9	known	0.01	1	119.0	1	107;131	n	0.00	0	104.5	0	101;108	n	0.00	0	74.0	0	74;74	n	0.01	2	210.0	2	218;202	y	0.00	0	180.5	0	175;186	n	0.00	0	68.5	0	53;84	n	0.00	0	172.5	0	145;200	n	0.00	0	96.5	0	83;110	n	0.00	0	82.5	0	88;77	n	0.00	0	260.0	0	252;268	n	0.00	0	143.5	0	152;135	n	0.00	0	110.5	0	110;111	n	ENSMUSG00000033174.18	Mgll	chr6	protein_coding	monoglyceride lipase
known_NIR_16195	chr6	88741684	88743214	+	88741684	88784993	A3SS	ENSMUST00000113585.9	known	0.00	0	131	0	131	n	0.02	2	108	2	108	y	0.03	2	74	2	74	y	0.00	0	202	0	202	n	0.01	1	186	1	186	n	0.00	0	84	0	84	n	0.00	0	200	0	200	n	0.00	0	110	0	110	n	0.00	0	77	0	77	n	0.00	0	268	0	268	n	0.00	0	135	0	135	n	0.01	1	111	1	111	n	ENSMUSG00000033174.18	Mgll	chr6	protein_coding	monoglyceride lipase
known_NIR_16196	chr6	88786428;88790945	88790862;88795556	+	88786428	88795556	cassetteExon	ENSMUST00000113585.9	known	0.04	4.5	110	3;6	110	y	0.04	4.0	108	3;5	108	y	0.05	5.0	87	6;4	87	y	0.03	8.5	237	7;10	237	y	0.06	11.0	168	8;14	168	y	0.02	1.5	83	3;0	83	n	0.05	10.5	201	7;14	201	y	0.05	5.5	108	3;8	108	y	0.06	6.5	109	4;9	109	y	0.05	15.0	264	13;17	264	y	0.07	12.5	170	14;11	170	y	0.10	9.5	89	11;8	89	y	ENSMUSG00000033174.18	Mgll	chr6	protein_coding	monoglyceride lipase
known_NIR_16197	chr6	88795645	88800308	+	88795645	88800173	A3SS	ENSMUST00000113585.9	known	0.03	4	132	4	132	y	0.00	0	145	0	145	n	0.02	2	120	2	120	y	0.00	0	248	0	248	n	0.00	0	224	0	224	n	0.02	2	80	2	80	y	0.02	4	226	4	226	y	0.04	4	105	4	105	y	0.00	0	124	0	124	n	0.00	1	353	1	353	n	0.01	3	226	3	226	y	0.00	0	88	0	88	n	ENSMUSG00000033174.18	Mgll	chr6	protein_coding	monoglyceride lipase
known_NIR_16198	chr6	88815247	88815362	-	88815267	88815362	A3SS	ENSMUST00000032169.8	known	0.09	6	59	6	59	y	0.12	9	63	9	63	y	0.09	6	61	6	61	y	0.00	0	111	0	111	n	0.03	3	112	3	112	y	0.10	4	36	4	36	y	0.08	10	110	10	110	y	0.09	5	52	5	52	y	0.00	0	68	0	68	n	0.09	11	108	11	108	y	0.10	10	90	10	90	y	0.03	3	89	3	89	y	ENSMUSG00000030083.12	Abtb1	chr6	protein_coding	ankyrin repeat and  BTB (POZ) domain containing 1
known_NIR_16199	chr6	88815943	88816028	-	88815943	88816167	A5SS	ENSMUST00000032169.8	known	0.00	0	41	0	41	n	0.02	1	54	1	54	n	0.00	0	53	0	53	n	0.00	0	62	0	62	n	0.03	2	66	2	66	y	0.00	0	22	0	22	n	0.03	2	76	2	76	y	0.04	1	27	1	27	n	0.02	1	65	1	65	n	0.02	2	83	2	83	y	0.00	0	51	0	51	n	0.00	0	49	0	49	n	ENSMUSG00000030083.12	Abtb1	chr6	protein_coding	ankyrin repeat and  BTB (POZ) domain containing 1
known_NIR_16200	chr6	88816753	88817820	-	88816753	88817692	A5SS&ES	ENSMUST00000203137.3	known	0.00	0	53	0	53	n	0.00	0	41	0	41	n	0.00	0	58	0	58	n	0.05	3	53	3	53	y	0.03	2	69	2	69	y	0.00	0	32	0	32	n	0.00	0	68	0	68	n	0.00	0	33	0	33	n	0.02	1	42	1	42	n	0.05	4	78	4	78	y	0.00	0	70	0	70	n	0.03	2	63	2	63	y	ENSMUSG00000030083.12	Abtb1	chr6	protein_coding	ankyrin repeat and  BTB (POZ) domain containing 1
known_NIR_16201	chr6	88816753	88817820	-	88816753;88817747	88817692;88817820	ES	ENSMUST00000032169.8	known	0.00	0	43.5	0	53;34	n	0.00	0	37.0	0	41;33	n	0.00	0	49.0	0	58;40	n	0.06	3	47.0	3	53;41	y	0.03	2	57.0	2	69;45	y	0.00	0	33.0	0	32;34	n	0.00	0	61.0	0	68;54	n	0.00	0	30.0	0	33;27	n	0.03	1	36.5	1	42;31	n	0.05	4	69.0	4	78;60	y	0.00	0	64.0	0	70;58	n	0.04	2	53.5	2	63;44	y	ENSMUSG00000030083.12	Abtb1	chr6	protein_coding	ankyrin repeat and  BTB (POZ) domain containing 1
known_NIR_16202	chr6	88817747	88817855	-	88817747	88817820	A5SS	ENSMUST00000032169.8	known	0.15	6	34	6	34	y	0.06	2	33	2	33	y	0.13	6	40	6	40	y	0.13	6	41	6	41	y	0.17	9	45	9	45	y	0.17	7	34	7	34	y	0.18	12	54	12	54	y	0.16	5	27	5	27	y	0.16	6	31	6	31	y	0.05	3	60	3	60	y	0.12	8	58	8	58	y	0.10	5	44	5	44	y	ENSMUSG00000030083.12	Abtb1	chr6	protein_coding	ankyrin repeat and  BTB (POZ) domain containing 1
known_NIR_16203	chr6	88882808	88882931	+	88879512	88882931	A5SS	ENSMUST00000055022.15	known	0.12	3	22	3	22	y	0.26	5	14	5	14	y	0.10	3	27	3	27	y	0.23	8	27	8	27	y	0.19	7	29	7	29	y	0.22	4	14	4	14	y	0.27	8	22	8	22	y	0.20	4	16	4	16	y	0.27	7	19	7	19	y	0.19	6	25	6	25	y	0.32	10	21	10	21	y	0.30	6	14	6	14	y	ENSMUSG00000002871.15	Tpra1	chr6	protein_coding	transmembrane protein, adipocyte asscociated 1
known_NIR_16204	chr6	88883060	88884923	+	88883060	88884552	3pMXE	ENSMUST00000151379.2	known	0.98	49	1	49	1	n	0.98	49	1	49	1	n	0.98	44	1	44	1	n	0.98	46	1	46	1	n	1.00	53	0	53	0	n	1.00	40	0	40	0	n	0.97	63	2	63	2	y	1.00	49	0	49	0	n	1.00	43	0	43	0	n	1.00	52	0	52	0	n	0.94	34	2	34	2	y	1.00	43	0	43	0	n	ENSMUSG00000002871.15	Tpra1	chr6	protein_coding	transmembrane protein, adipocyte asscociated 1
known_NIR_16205	chr6	88883060;88884808	88884552;88884923	+	88883060	88884923	cassetteExon	ENSMUST00000055022.15	known	0.06	3.0	49	1;5	49	n	0.01	0.5	49	1;0	49	n	0.04	2.0	44	1;3	44	n	0.02	1.0	46	1;1	46	n	0.05	2.5	53	0;5	53	n	0.02	1.0	40	0;2	40	n	0.05	3.0	63	2;4	63	y	0.03	1.5	49	0;3	49	n	0.01	0.5	43	0;1	43	n	0.02	1.0	52	0;2	52	n	0.06	2.0	34	2;2	34	y	0.00	0.0	43	0;0	43	n	ENSMUSG00000002871.15	Tpra1	chr6	protein_coding	transmembrane protein, adipocyte asscociated 1
known_NIR_16206	chr6	88883060;88884808	88884558;88884923	+	88883060	88884923	cassetteExon	ENSMUST00000055022.15	known	0.06	3.0	49	1;5	49	n	0.00	0.0	49	0;0	49	n	0.04	2.0	44	1;3	44	n	0.03	1.5	46	2;1	46	n	0.05	3.0	53	1;5	53	n	0.07	3.0	40	4;2	40	y	0.03	2.0	63	0;4	63	n	0.04	2.0	49	1;3	49	n	0.01	0.5	43	0;1	43	n	0.03	1.5	52	1;2	52	n	0.04	1.5	34	1;2	34	n	0.00	0.0	43	0;0	43	n	ENSMUSG00000002871.15	Tpra1	chr6	protein_coding	transmembrane protein, adipocyte asscociated 1
known_NIR_16207	chr6	88885054	88886272	+	88885054;88885298	88885166;88886272	ES	ENSMUST00000055022.15	known	0.04	2	49.0	2	43;55	y	0.00	0	35.0	0	35;35	n	0.08	4	47.5	4	46;49	y	0.04	2	48.5	2	38;59	y	0.06	5	78.0	5	71;85	y	0.00	0	42.0	0	39;45	n	0.09	6	58.0	6	46;70	y	0.00	0	36.0	0	37;35	n	0.07	3	40.5	3	33;48	y	0.05	3	59.5	3	60;59	y	0.04	2	52.0	2	39;65	y	0.05	3	57.0	3	61;53	y	ENSMUSG00000002871.15	Tpra1	chr6	protein_coding	transmembrane protein, adipocyte asscociated 1
known_NIR_16208	chr6	88885054	88886272	+	88885298	88886272	A5SS&ES	ENSMUST00000144405.3	known	0.04	2	55	2	55	y	0.00	0	35	0	35	n	0.08	4	49	4	49	y	0.03	2	59	2	59	y	0.06	5	85	5	85	y	0.00	0	45	0	45	n	0.08	6	70	6	70	y	0.00	0	35	0	35	n	0.06	3	48	3	48	y	0.05	3	59	3	59	y	0.03	2	65	2	65	y	0.05	3	53	3	53	y	ENSMUSG00000002871.15	Tpra1	chr6	protein_coding	transmembrane protein, adipocyte asscociated 1
known_NIR_16209	chr6	88886358	88886463	+	88886358	88886490	A3SS	ENSMUST00000055022.15	known	0.00	0	59	0	59	n	0.00	0	41	0	41	n	0.02	1	65	1	65	n	0.02	1	62	1	62	n	0.02	2	84	2	84	y	0.00	0	50	0	50	n	0.00	0	78	0	78	n	0.00	0	58	0	58	n	0.00	0	56	0	56	n	0.01	1	80	1	80	n	0.00	0	64	0	64	n	0.00	0	68	0	68	n	ENSMUSG00000002871.15	Tpra1	chr6	protein_coding	transmembrane protein, adipocyte asscociated 1
known_NIR_16210	chr6	88887383	88887779	+	88887383	88887530	3pMXE	ENSMUST00000152585.8	known	0.00	0	43	0	43	n	0.00	0	49	0	49	n	0.03	2	59	2	59	y	0.00	0	56	0	56	n	0.00	0	96	0	96	n	0.00	0	44	0	44	n	0.00	0	72	0	72	n	0.00	0	49	0	49	n	0.00	0	47	0	47	n	0.00	0	49	0	49	n	0.00	0	60	0	60	n	0.00	0	79	0	79	n	ENSMUSG00000002871.15	Tpra1	chr6	protein_coding	transmembrane protein, adipocyte asscociated 1
known_NIR_16211	chr6	88887383	88887779	+	88887383;88887632	88887530;88887779	ES	ENSMUST00000055022.15	known	0.00	0	57.5	0	43;72	n	0.00	0	51.5	0	49;54	n	0.03	2	64.0	2	59;69	y	0.00	0	60.5	0	56;65	n	0.00	0	98.5	0	96;101	n	0.00	0	49.5	0	44;55	n	0.00	0	81.5	0	72;91	n	0.00	0	44.0	0	49;39	n	0.00	0	51.0	0	47;55	n	0.00	0	55.5	0	49;62	n	0.00	0	61.0	0	60;62	n	0.00	0	75.5	0	79;72	n	ENSMUSG00000002871.15	Tpra1	chr6	protein_coding	transmembrane protein, adipocyte asscociated 1
known_NIR_16212	chr6	89396800;89444455	89444372;89544569	-	89396800	89544569	cassetteExon	ENSMUST00000113550.6	known	0.93	13.0	1	13;13	1	n	0.90	18.5	2	21;16	2	y	1.00	24.0	0	26;22	0	n	1.00	10.0	0	10;10	0	n	0.96	23.0	1	11;35	1	n	1.00	20.0	0	17;23	0	n	1.00	30.5	0	29;32	0	n	0.87	13.5	2	17;10	2	y	0.84	10.5	2	10;11	2	y	1.00	36.0	0	38;34	0	n	0.87	19.5	3	19;20	3	y	1.00	21.0	0	17;25	0	n	ENSMUSG00000030086.17	Chchd6	chr6	protein_coding	coiled-coil-helix-coiled-coil-helix domain containing 6
known_NIR_16213	chr6	90322481	90323288	+	90322379	90323288	A5SS	ENSMUST00000046128.12	known	0.05	20	378	20	378	y	0.07	19	257	19	257	y	0.04	4	103	4	103	y	0.05	24	470	24	470	y	0.08	40	479	40	479	y	0.00	0	114	0	114	n	0.07	27	377	27	377	y	0.09	20	199	20	199	y	0.05	17	300	17	300	y	0.08	40	491	40	491	y	0.08	26	295	26	295	y	0.07	45	581	45	581	y	ENSMUSG00000034456.16	Uroc1	chr6	protein_coding	urocanase domain containing 1
known_NIR_16214	chr6	90442439	90443402	+	90439707	90443402	A5SS	ENSMUST00000032174.12	known	0.58	139	101	139	101	y	0.68	152	73	152	73	y	0.83	115	23	115	23	y	0.58	160	117	160	117	y	0.57	139	103	139	103	y	0.79	83	22	83	22	y	0.67	124	60	124	60	y	0.70	81	35	81	35	y	0.55	84	70	84	70	y	0.62	179	110	179	110	y	0.51	94	89	94	89	y	0.54	145	124	145	124	y	ENSMUSG00000030087.12	Klf15	chr6	protein_coding	Kruppel-like factor 15
known_NIR_16215	chr6	90444505	90451065	+	90444505	90451102	A3SS	ENSMUST00000032174.12	known	0.01	2	372	2	372	y	0.01	2	380	2	380	y	0.00	0	140	0	140	n	0.00	1	359	1	359	n	0.00	0	338	0	338	n	0.00	0	74	0	74	n	0.00	1	349	1	349	n	0.01	1	138	1	138	n	0.00	0	260	0	260	n	0.01	3	337	3	337	y	0.01	2	332	2	332	y	0.00	0	343	0	343	n	ENSMUSG00000030087.12	Klf15	chr6	protein_coding	Kruppel-like factor 15
known_NIR_16216	chr6	90527879	90534184	+	90527952	90534184	A5SS	ENSMUST00000130418.8	known	0.45	578	709	578	709	y	0.45	329	406	329	406	y	0.53	251	222	251	222	y	0.44	713	895	713	895	y	0.45	639	787	639	787	y	0.49	165	171	165	171	y	0.42	424	582	424	582	y	0.50	255	257	255	257	y	0.46	568	679	568	679	y	0.41	624	881	624	881	y	0.47	462	521	462	521	y	0.43	813	1072	813	1072	y	ENSMUSG00000030088.16	Aldh1l1	chr6	protein_coding	aldehyde dehydrogenase 1 family, member L1
known_NIR_16217	chr6	90544818	90546455	+	90543746	90546455	A5SS	ENSMUST00000130418.8	known	0.00	7	1608	7	1608	y	0.00	5	1023	5	1023	y	0.00	3	602	3	602	y	0.00	5	1806	5	1806	y	0.01	13	1610	13	1610	y	0.01	3	441	3	441	y	0.01	8	1290	8	1290	y	0.00	0	571	0	571	n	0.00	3	1614	3	1614	y	0.00	4	1881	4	1881	y	0.00	5	1315	5	1315	y	0.00	3	2355	3	2355	y	ENSMUSG00000030088.16	Aldh1l1	chr6	protein_coding	aldehyde dehydrogenase 1 family, member L1
known_NIR_16218	chr6	90596627	90601794	+	90589163	90601794	A5SS	ENSMUST00000044019.16	known	0.00	0	9	0	9	n	0.06	1	15	1	15	n	0.50	4	4	4	4	n	0.12	1	7	1	7	n	0.10	1	9	1	9	n	0.60	3	2	3	2	n	0.00	0	4	0	4	n	0.20	2	8	2	8	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.50	5	5	5	5	y	ENSMUSG00000030089.16	Slc41a3	chr6	protein_coding	solute carrier family 41, member 3
known_NIR_16219	chr6	90639937	90644882	-	90639937;90641053	90641004;90644882	ES	ENSMUST00000101151.10	known	0.37	8	13.5	8	7;20	y	0.39	8	12.5	8	7;18	y	0.63	6	3.5	6	5;2	y	0.40	8	12.0	8	10;14	y	0.38	9	14.5	9	11;18	y	0.28	5	13.0	5	13;13	y	0.35	4	7.5	4	5;10	y	0.54	10	8.5	10	9;8	y	0.27	3	8.0	3	9;7	y	0.35	9	17.0	9	17;17	y	0.64	15	8.5	15	7;10	y	0.48	10	11.0	10	8;14	y	ENSMUSG00000034312.16	Iqsec1	chr6	protein_coding	IQ motif and Sec7 domain 1
known_NIR_16220	chr6	90639937	90644882	-	90641053	90644882	A3SS&ES	ENSMUST00000101153.10	known	0.29	8	20	8	20	y	0.31	8	18	8	18	y	0.75	6	2	6	2	n	0.36	8	14	8	14	y	0.33	9	18	9	18	y	0.28	5	13	5	13	y	0.29	4	10	4	10	y	0.56	10	8	10	8	y	0.30	3	7	3	7	y	0.35	9	17	9	17	y	0.60	15	10	15	10	y	0.42	10	14	10	14	y	ENSMUSG00000034312.16	Iqsec1	chr6	protein_coding	IQ motif and Sec7 domain 1
known_NIR_16221	chr6	90671832	90713559	-	90671832	90693190	5pMXE	ENSMUST00000101153.10	known	0.38	5	8	5	8	y	0.33	3	6	3	6	n	0.53	9	8	9	8	y	0.62	21	13	21	13	y	0.58	18	13	18	13	y	0.57	4	3	4	3	n	0.18	3	14	3	14	y	0.31	5	11	5	11	y	0.43	6	8	6	8	y	0.57	12	9	12	9	y	0.55	6	5	6	5	y	0.68	15	7	15	7	y	ENSMUSG00000034312.16	Iqsec1	chr6	protein_coding	IQ motif and Sec7 domain 1
known_NIR_16222	chr6	90990298	90992806	-	90991478	90992806	A3SS	ENSMUST00000032179.14	known	0.17	4	19	4	19	y	0.19	6	26	6	26	y	0.05	1	21	1	21	n	0.15	5	28	5	28	y	0.03	1	32	1	32	n	0.22	2	7	2	7	n	0.16	5	27	5	27	y	0.07	1	13	1	13	n	0.21	5	19	5	19	y	0.14	3	18	3	18	y	0.09	2	20	2	20	y	0.06	1	15	1	15	n	ENSMUSG00000030091.18	Nup210	chr6	protein_coding	nucleoporin 210
known_NIR_16223	chr6	91143267	91143401	+	91143267	91144786	A3SS	ENSMUST00000041736.11	known	0.03	2	74	2	74	y	0.00	0	61	0	61	n	0.07	1	13	1	13	n	0.00	0	89	0	89	n	0.01	1	100	1	100	n	0.06	1	16	1	16	n	0.01	1	104	1	104	n	0.00	0	37	0	37	n	0.01	1	78	1	78	n	0.01	1	161	1	161	n	0.02	2	88	2	88	y	0.01	1	104	1	104	n	ENSMUSG00000034245.11	Hdac11	chr6	protein_coding	histone deacetylase 11
known_NIR_16224	chr6	91143267	91145791	+	91143267	91144786	3pMXE	ENSMUST00000127768.2	known	0.00	0	74	0	74	n	0.02	1	61	1	61	n	0.00	0	13	0	13	n	0.00	0	89	0	89	n	0.04	4	100	4	100	y	0.00	0	16	0	16	n	0.00	0	104	0	104	n	0.00	0	37	0	37	n	0.00	0	78	0	78	n	0.01	1	161	1	161	n	0.01	1	88	1	88	n	0.00	0	104	0	104	n	ENSMUSG00000034245.11	Hdac11	chr6	protein_coding	histone deacetylase 11
known_NIR_16225	chr6	91143267	91145791	+	91143267;91144862	91144786;91145791	ES	ENSMUST00000041736.11	known	0.00	0	71.5	0	74;69	n	0.01	1	66.5	1	61;72	n	0.00	0	16.5	0	13;20	n	0.00	0	94.0	0	89;99	n	0.04	4	107.5	4	100;115	y	0.00	0	20.5	0	16;25	n	0.00	0	119.5	0	104;135	n	0.00	0	36.0	0	37;35	n	0.00	0	82.5	0	78;87	n	0.01	1	164.0	1	161;167	n	0.01	1	88.0	1	88;88	n	0.00	0	116.0	0	104;128	n	ENSMUSG00000034245.11	Hdac11	chr6	protein_coding	histone deacetylase 11
known_NIR_16226	chr6	91676013;91688609	91688493;91700263	+	91676013	91700263	cassetteExon	ENSMUST00000032185.9	known	0.11	1.5	12	1;2	12	n	0.00	0.0	8	0;0	8	n	0.08	1.0	11	0;2	11	n	0.10	1.5	13	2;1	13	n	0.16	3.5	19	3;4	19	y	0.14	0.5	3	1;0	3	n	0.05	1.0	20	1;1	20	n	0.00	0.0	14	0;0	14	n	0.15	3.0	17	0;6	17	n	0.21	5.0	19	0;10	19	n	0.04	1.0	25	0;2	25	n	0.04	1.5	36	1;2	36	n	ENSMUSG00000030096.9	Slc6a6	chr6	protein_coding	solute carrier family 6 (neurotransmitter transporter, taurine), member 6
known_NIR_16227	chr6	91678806	91700263	+	91676013	91700263	A5SS	ENSMUST00000032185.9	known	0.08	1	12	1	12	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.00	0	19	0	19	n	0.00	0	3	0	3	n	0.00	0	20	0	20	n	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.05	1	19	1	19	n	0.00	0	25	0	25	n	0.08	3	36	3	36	y	ENSMUSG00000030096.9	Slc6a6	chr6	protein_coding	solute carrier family 6 (neurotransmitter transporter, taurine), member 6
known_NIR_16228	chr6	92140201	92141169	+	92140239	92141169	A5SS	ENSMUST00000113460.8	known	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.07	2	28	2	28	y	0.00	0	13	0	13	n	0.00	0	24	0	24	n	0.18	2	9	2	9	y	0.00	0	18	0	18	n	0.00	0	19	0	19	n	0.00	0	14	0	14	n	0.05	1	20	1	20	n	0.00	0	12	0	12	n	0.11	3	24	3	24	y	ENSMUSG00000005893.15	Nr2c2	chr6	protein_coding	nuclear receptor subfamily 2, group C, member 2
known_NIR_16229	chr6	92167233	92168230	-	92167439	92168230	A3SS	ENSMUST00000014694.11	known	0.14	2	12	2	12	y	0.00	0	9	0	9	n	0.12	2	14	2	14	y	0.00	0	11	0	11	n	0.00	0	18	0	18	n	0.00	0	7	0	7	n	0.00	0	22	0	22	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.04	1	27	1	27	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	ENSMUSG00000014550.15	Rbsn	chr6	protein_coding	rabenosyn, RAB effector
known_NIR_16230	chr6	93663856	93674175	-	93663856;93671156	93670989;93674175	ES	ENSMUST00000089317.12	known	0.00	0	17.5	0	25;10	n	0.18	4	18.0	4	23;13	y	0.20	5	20.5	5	18;23	y	0.15	4	22.0	4	29;15	y	0.16	8	41.0	8	47;35	y	0.16	3	15.5	3	17;14	y	0.15	6	33.5	6	40;27	y	0.06	1	15.5	1	20;11	n	0.11	2	17.0	2	22;12	y	0.28	12	31.5	12	42;21	y	0.20	4	16.0	4	22;10	y	0.12	3	22.5	3	22;23	y	ENSMUSG00000045095.17	Magi1	chr6	protein_coding	membrane associated guanylate kinase, WW and PDZ domain containing 1
known_NIR_16231	chr6	93663856;93671189	93670989;93674175	-	93663856	93674175	cassetteExon	ENSMUST00000055224.15	known	1.00	12.5	0	25;0	0	n	0.75	12.0	4	23;1	4	n	0.64	9.0	5	18;0	5	n	0.79	15.0	4	29;1	4	n	0.75	23.5	8	47;0	8	n	0.74	8.5	3	17;0	3	n	0.77	20.0	6	40;0	6	n	0.91	10.0	1	20;0	1	n	0.85	11.0	2	22;0	2	n	0.66	23.5	12	42;5	12	y	0.73	11.0	4	22;0	4	n	0.79	11.0	3	22;0	3	n	ENSMUSG00000045095.17	Magi1	chr6	protein_coding	membrane associated guanylate kinase, WW and PDZ domain containing 1
known_NIR_16232	chr6	93663856;93671192	93670989;93674175	-	93663856	93674175	cassetteExon	ENSMUST00000055224.15	known	1.00	12.5	0	25;0	0	n	0.74	11.5	4	23;0	4	n	0.69	11.0	5	18;4	5	y	0.78	14.5	4	29;0	4	n	0.75	24.5	8	47;2	8	y	0.76	9.5	3	17;2	3	y	0.77	20.5	6	40;1	6	n	0.91	10.0	1	20;0	1	n	0.86	12.5	2	22;3	2	y	0.64	21.5	12	42;1	12	n	0.74	11.5	4	22;1	4	n	0.81	12.5	3	22;3	3	y	ENSMUSG00000045095.17	Magi1	chr6	protein_coding	membrane associated guanylate kinase, WW and PDZ domain containing 1
known_NIR_16233	chr6	93671189	93674175	-	93671156	93674175	A3SS	ENSMUST00000089317.12	known	0.00	0	10	0	10	n	0.07	1	13	1	13	n	0.00	0	23	0	23	n	0.06	1	15	1	15	n	0.00	0	35	0	35	n	0.00	0	14	0	14	n	0.00	0	27	0	27	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.19	5	21	5	21	y	0.00	0	10	0	10	n	0.00	0	23	0	23	n	ENSMUSG00000045095.17	Magi1	chr6	protein_coding	membrane associated guanylate kinase, WW and PDZ domain containing 1
known_NIR_16234	chr6	93671192	93674175	-	93671156	93674175	A3SS	ENSMUST00000089317.12	known	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.15	4	23	4	23	y	0.00	0	15	0	15	n	0.05	2	35	2	35	y	0.12	2	14	2	14	y	0.04	1	27	1	27	n	0.00	0	11	0	11	n	0.20	3	12	3	12	y	0.05	1	21	1	21	n	0.09	1	10	1	10	n	0.12	3	23	3	23	y	ENSMUSG00000045095.17	Magi1	chr6	protein_coding	membrane associated guanylate kinase, WW and PDZ domain containing 1
known_NIR_16235	chr6	93678362	93684985	-	93678362;93681341	93681258;93684985	ES	ENSMUST00000089317.12	known	0.93	19	1.5	19	1;2	n	0.91	15	1.5	15	1;2	n	0.94	16	1.0	16	0;2	n	0.91	21	2.0	21	1;3	n	0.95	39	2.0	39	2;2	y	0.91	26	2.5	26	2;3	y	0.96	24	1.0	24	0;2	n	1.00	14	0.0	14	0;0	n	1.00	17	0.0	17	0;0	n	0.97	33	1.0	33	2;0	n	1.00	15	0.0	15	0;0	n	0.95	21	1.0	21	0;2	n	ENSMUSG00000045095.17	Magi1	chr6	protein_coding	membrane associated guanylate kinase, WW and PDZ domain containing 1
known_NIR_16236	chr6	93685198	93694221	-	93685201	93694221	A3SS	ENSMUST00000089317.12	known	0.15	4	23	4	23	y	0.00	0	21	0	21	n	0.24	8	25	8	25	y	0.05	1	21	1	21	n	0.15	5	29	5	29	y	0.22	7	25	7	25	y	0.15	5	29	5	29	y	0.00	0	16	0	16	n	0.00	0	25	0	25	n	0.13	5	34	5	34	y	0.11	3	24	3	24	y	0.14	6	36	6	36	y	ENSMUSG00000045095.17	Magi1	chr6	protein_coding	membrane associated guanylate kinase, WW and PDZ domain containing 1
known_NIR_16237	chr6	93737746	93750588	-	93737746;93746524	93746489;93750588	ES	ENSMUST00000089317.12	known	0.77	15	4.5	15	5;4	y	0.70	7	3.0	7	1;5	n	0.57	10	7.5	10	7;8	y	0.60	13	8.5	13	11;6	y	0.61	26	16.5	26	17;16	y	0.47	7	8.0	7	9;7	y	0.58	14	10.0	14	8;12	y	0.94	16	1.0	16	2;0	n	0.76	16	5.0	16	4;6	y	0.40	9	13.5	9	14;13	y	0.67	13	6.5	13	7;6	y	0.65	17	9.0	17	10;8	y	ENSMUSG00000045095.17	Magi1	chr6	protein_coding	membrane associated guanylate kinase, WW and PDZ domain containing 1
known_NIR_16238	chr6	94512749	94526021	+	94512749	94553315	A3SS	ENSMUST00000061118.11	known	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.08	1	12	1	12	n	0.00	0	7	0	7	n	0.00	0	19	0	19	n	0.00	0	7	0	7	n	0.00	0	27	0	27	n	0.12	1	7	1	7	n	0.00	0	10	0	10	n	0.12	2	15	2	15	y	0.00	0	14	0	14	n	0.07	1	13	1	13	n	ENSMUSG00000045100.12	Slc25a26	chr6	protein_coding	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26
known_NIR_16239	chr6	94512749	94569393	+	94512749;94553359	94553315;94569393	ES	ENSMUST00000061118.11	known	0.15	3	17.5	3	15;20	y	0.52	6	5.5	6	5;6	y	0.21	3	11.5	3	12;11	y	0.31	5	11.0	5	7;15	y	0.23	6	20.0	6	19;21	y	0.15	1	5.5	1	7;4	n	0.00	0	27.5	0	27;28	n	0.19	2	8.5	2	7;10	y	0.15	2	11.0	2	10;12	y	0.16	3	15.5	3	15;16	y	0.13	2	13.0	2	14;12	y	0.26	5	14.5	5	13;16	y	ENSMUSG00000045100.12	Slc25a26	chr6	protein_coding	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26
known_NIR_16240	chr6	97093023	97095583	-	97093023	97095842	A5SS	ENSMUST00000054344.11	known	0.33	4	8	4	8	y	0.11	1	8	1	8	n	0.08	1	12	1	12	n	0.10	1	9	1	9	n	0.13	2	13	2	13	y	0.00	0	10	0	10	n	0.10	1	9	1	9	n	0.08	1	11	1	11	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.00	0	7	0	7	n	ENSMUSG00000035245.13	Eogt	chr6	protein_coding	EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase
known_NIR_16241	chr6	97180555	97182267	-	97180555	97182064	A5SS	ENSMUST00000204056.2	known	1.00	34	0	34	0	n	0.88	14	2	14	2	y	0.92	35	3	35	3	y	0.90	35	4	35	4	y	0.97	37	1	37	1	n	0.88	15	2	15	2	y	0.89	25	3	25	3	y	0.95	20	1	20	1	n	1.00	38	0	38	0	n	0.98	45	1	45	1	n	0.84	26	5	26	5	y	0.94	31	2	31	2	y	ENSMUSG00000030061.17	Uba3	chr6	protein_coding	ubiquitin-like modifier activating enzyme 3
known_NIR_16242	chr6	97180555	97182494	-	97182308	97182494	3pMXE	ENSMUST00000203215.2	known	0.00	0	24	0	24	n	0.14	1	6	1	6	n	0.20	4	16	4	16	y	0.12	2	15	2	15	y	0.17	4	20	4	20	y	0.25	2	6	2	6	n	0.27	3	8	3	8	y	0.23	3	10	3	10	y	0.17	4	19	4	19	y	0.10	2	19	2	19	y	0.25	3	9	3	9	y	0.23	5	17	5	17	y	ENSMUSG00000030061.17	Uba3	chr6	protein_coding	ubiquitin-like modifier activating enzyme 3
known_NIR_16243	chr6	97180555;97182308	97182064;97182494	-	97180555	97182494	cassetteExon	ENSMUST00000164744.8	known	1.00	12.0	0	0;24	0	n	0.80	4.0	1	2;6	1	n	0.70	9.5	4	3;16	4	y	0.83	9.5	2	4;15	2	y	0.72	10.5	4	1;20	4	n	0.67	4.0	2	2;6	2	y	0.65	5.5	3	3;8	3	y	0.65	5.5	3	1;10	3	n	0.70	9.5	4	0;19	4	n	0.83	10.0	2	1;19	2	n	0.70	7.0	3	5;9	3	y	0.66	9.5	5	2;17	5	y	ENSMUSG00000030061.17	Uba3	chr6	protein_coding	ubiquitin-like modifier activating enzyme 3
known_NIR_16244	chr6	97180555;97182308	97182267;97182494	-	97180555	97182494	cassetteExon	ENSMUST00000164744.8	known	1.00	29.0	0	34;24	0	n	0.91	10.0	1	14;6	1	n	0.86	25.5	4	35;16	4	y	0.93	25.0	2	35;15	2	y	0.88	28.5	4	37;20	4	y	0.84	10.5	2	15;6	2	y	0.85	16.5	3	25;8	3	y	0.83	15.0	3	20;10	3	y	0.88	28.5	4	38;19	4	y	0.94	32.0	2	45;19	2	y	0.85	17.5	3	26;9	3	y	0.83	24.0	5	31;17	5	y	ENSMUSG00000030061.17	Uba3	chr6	protein_coding	ubiquitin-like modifier activating enzyme 3
known_NIR_16245	chr6	98922384	98922495	-	98922387	98922495	A3SS	ENSMUST00000113326.9	known	0.59	13	9	13	9	y	0.44	4	5	4	5	n	0.43	12	16	12	16	y	0.33	9	18	9	18	y	0.29	6	15	6	15	y	0.11	2	16	2	16	y	0.27	3	8	3	8	y	0.50	7	7	7	7	y	0.26	5	14	5	14	y	0.35	7	13	7	13	y	0.23	3	10	3	10	y	0.25	4	12	4	12	y	ENSMUSG00000030067.18	Foxp1	chr6	protein_coding	forkhead box P1
known_NIR_16246	chr6	98987018	98992385	-	98987015	98992385	A3SS	ENSMUST00000113326.9	known	1.00	2	0	2	0	n	1.00	3	0	3	0	n	1.00	13	0	13	0	n	1.00	9	0	9	0	n	1.00	11	0	11	0	n	1.00	9	0	9	0	n	1.00	8	0	8	0	n	1.00	10	0	10	0	n	1.00	6	0	6	0	n	1.00	9	0	9	0	n	1.00	7	0	7	0	n	0.86	12	2	12	2	y	ENSMUSG00000030067.18	Foxp1	chr6	protein_coding	forkhead box P1
known_NIR_16247	chr6	98992474	98993489	-	98992471	98993489	A3SS	ENSMUST00000113326.9	known	0.83	5	1	5	1	n	0.00	0	1	0	1	n	1.00	12	0	12	0	n	0.83	5	1	5	1	n	0.83	10	2	10	2	y	1.00	6	0	6	0	n	1.00	7	0	7	0	n	1.00	4	0	4	0	n	0.75	3	1	3	1	n	0.67	6	3	6	3	n	1.00	11	0	11	0	n	0.67	4	2	4	2	n	ENSMUSG00000030067.18	Foxp1	chr6	protein_coding	forkhead box P1
known_NIR_16248	chr6	98993626	99005125	-	98993626	99052815	A5SS	ENSMUST00000113326.9	known	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.11	1	8	1	8	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.43	3	4	3	4	n	0.00	0	8	0	8	n	0.60	3	2	3	2	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.13	2	13	2	13	y	ENSMUSG00000030067.18	Foxp1	chr6	protein_coding	forkhead box P1
known_NIR_16249	chr6	99053006	99139800	-	99052910	99139800	A3SS	ENSMUST00000113326.9	known	1.00	4	0	4	0	n	1.00	1	0	1	0	n	1.00	18	0	18	0	n	1.00	16	0	16	0	n	1.00	10	0	10	0	n	1.00	14	0	14	0	n	0.89	8	1	8	1	n	0.89	8	1	8	1	n	1.00	8	0	8	0	n	1.00	5	0	5	0	n	0.67	2	1	2	1	n	0.83	10	2	10	2	y	ENSMUSG00000030067.18	Foxp1	chr6	protein_coding	forkhead box P1
known_NIR_16250	chr6	99129374	99139800	-	99053006	99139800	A3SS	ENSMUST00000113322.9	known	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.10	2	18	2	18	y	0.00	0	16	0	16	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	ENSMUSG00000030067.18	Foxp1	chr6	protein_coding	forkhead box P1
known_NIR_16251	chr6	99139990	99225232	-	99139990	99237306	A5SS	ENSMUST00000113326.9	known	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	15	0	15	n	0.00	0	4	0	4	n	0.17	2	10	2	10	y	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.20	1	4	1	4	n	0.25	2	6	2	6	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.33	4	8	4	8	y	ENSMUSG00000030067.18	Foxp1	chr6	protein_coding	forkhead box P1
known_NIR_16252	chr7	100004568	100016737	-	100004568	100020930	A5SS	ENSMUST00000032963.10	known	0.00	0	36	0	36	n	0.00	0	36	0	36	n	0.00	0	53	0	53	n	0.00	0	39	0	39	n	0.02	1	62	1	62	n	0.00	0	42	0	42	n	0.00	0	57	0	57	n	0.00	0	32	0	32	n	0.00	0	35	0	35	n	0.04	2	54	2	54	y	0.00	0	41	0	41	n	0.00	0	37	0	37	n	ENSMUSG00000030718.10	Ppme1	chr7	protein_coding	protein phosphatase methylesterase 1
known_NIR_16253	chr7	100059657	100062537	+	100059657	100062533	A3SS	ENSMUST00000098259.11	known	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.14	2	12	2	12	y	0.00	0	10	0	10	n	0.17	1	5	1	5	n	0.00	0	8	0	8	n	0.11	1	8	1	8	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.11	2	17	2	17	y	ENSMUSG00000047248.21	C2cd3	chr7	protein_coding	C2 calcium-dependent domain containing 3
known_NIR_16254	chr7	100114764	100118586	+	100109095	100118586	A5SS	ENSMUST00000051777.15	known	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	18	0	18	n	0.00	0	8	0	8	n	0.06	1	17	1	17	n	0.27	3	8	3	8	y	0.11	1	8	1	8	n	0.00	0	26	0	26	n	0.00	0	16	0	16	n	0.00	0	21	0	21	n	ENSMUSG00000047248.21	C2cd3	chr7	protein_coding	C2 calcium-dependent domain containing 3
known_NIR_16255	chr7	100142672	100143459	+	100142672	100143421	A3SS	ENSMUST00000126534.8	known	0.00	0	103	0	103	n	0.00	0	87	0	87	n	0.02	3	160	3	160	y	0.00	0	87	0	87	n	0.00	0	157	0	157	n	0.01	1	91	1	91	n	0.02	5	209	5	209	y	0.00	0	72	0	72	n	0.00	0	59	0	59	n	0.04	5	116	5	116	y	0.00	0	74	0	74	n	0.09	3	30	3	30	y	ENSMUSG00000033685.14	Ucp2	chr7	protein_coding	uncoupling protein 2 (mitochondrial, proton carrier)
known_NIR_16256	chr7	100145414	100145933	+	100143582	100145933	A5SS	ENSMUST00000126534.8	known	0.00	0	111	0	111	n	0.00	0	99	0	99	n	0.00	0	146	0	146	n	0.00	0	98	0	98	n	0.01	1	195	1	195	n	0.04	5	115	5	115	y	0.00	0	261	0	261	n	0.00	0	99	0	99	n	0.01	1	71	1	71	n	0.00	0	121	0	121	n	0.00	0	120	0	120	n	0.00	0	43	0	43	n	ENSMUSG00000033685.14	Ucp2	chr7	protein_coding	uncoupling protein 2 (mitochondrial, proton carrier)
known_NIR_16257	chr7	100186472	100188279	+	100186399	100188279	A5SS	ENSMUST00000054310.4	known	0.14	3	19	3	19	y	0.11	2	17	2	17	y	0.11	2	17	2	17	y	0.06	1	17	1	17	n	0.05	2	35	2	35	y	0.25	2	6	2	6	n	0.08	3	33	3	33	y	0.04	1	22	1	22	n	0.09	3	29	3	29	y	0.03	1	34	1	34	n	0.00	0	33	0	33	n	0.07	3	37	3	37	y	ENSMUSG00000044881.8	Coa4	chr7	protein_coding	cytochrome c oxidase assembly factor 4
known_NIR_16258	chr7	100214634	100220459	-	100214486	100220459	A3SS	ENSMUST00000150042.8	known	0.00	0	122	0	122	n	0.05	5	106	5	106	y	0.03	3	97	3	97	y	0.01	1	108	1	108	n	0.00	0	146	0	146	n	0.02	1	62	1	62	n	0.04	5	120	5	120	y	0.00	0	65	0	65	n	0.00	0	106	0	106	n	0.01	1	170	1	170	n	0.01	1	147	1	147	n	0.00	0	140	0	140	n	ENSMUSG00000030706.18	Mrpl48	chr7	protein_coding	mitochondrial ribosomal protein L48
known_NIR_16259	chr7	100220496	100232197	-	100220496	100223669	A5SS&ES	ENSMUST00000146003.9	known	0.00	0	105	0	105	n	0.01	1	116	1	116	n	0.02	2	83	2	83	y	0.00	0	108	0	108	n	0.00	0	116	0	116	n	0.00	0	46	0	46	n	0.01	1	114	1	114	n	0.00	0	54	0	54	n	0.01	1	101	1	101	n	0.01	2	155	2	155	y	0.02	2	127	2	127	y	0.02	2	129	2	129	y	ENSMUSG00000030706.18	Mrpl48	chr7	protein_coding	mitochondrial ribosomal protein L48
known_NIR_16260	chr7	100220496	100232197	-	100220496;100223721	100223669;100232197	ES	ENSMUST00000150042.8	known	0.00	0	102.5	0	105;100	n	0.01	1	115.0	1	116;114	n	0.03	2	73.0	2	83;63	y	0.00	0	100.0	0	108;92	n	0.00	0	103.0	0	116;90	n	0.00	0	36.5	0	46;27	n	0.01	1	117.5	1	114;121	n	0.00	0	44.0	0	54;34	n	0.01	1	90.0	1	101;79	n	0.01	2	142.0	2	155;129	y	0.02	2	105.0	2	127;83	y	0.02	2	120.5	2	129;112	y	ENSMUSG00000030706.18	Mrpl48	chr7	protein_coding	mitochondrial ribosomal protein L48
known_NIR_16261	chr7	100220496;100220722	100220655;100223669	-	100220496	100223669	cassetteExon	ENSMUST00000150042.8	known	0.05	5.5	105	7;4	105	y	0.04	4.5	116	4;5	116	y	0.02	2.0	83	2;2	83	y	0.04	4.5	108	3;6	108	y	0.03	3.0	116	4;2	116	y	0.02	1.0	46	1;1	46	n	0.04	5.0	114	5;5	114	y	0.01	0.5	54	1;0	54	n	0.04	4.5	101	3;6	101	y	0.02	2.5	155	2;3	155	y	0.03	4.5	127	5;4	127	y	0.04	5.5	129	4;7	129	y	ENSMUSG00000030706.18	Mrpl48	chr7	protein_coding	mitochondrial ribosomal protein L48
known_NIR_16262	chr7	100223721	100240418	-	100223721	100232197	5pMXE	ENSMUST00000150042.8	known	0.00	0	100	0	100	n	0.03	3	114	3	114	y	0.03	2	63	2	63	y	0.00	0	92	0	92	n	0.00	0	90	0	90	n	0.04	1	27	1	27	n	0.01	1	121	1	121	n	0.03	1	34	1	34	n	0.02	2	79	2	79	y	0.02	2	129	2	129	y	0.00	0	83	0	83	n	0.02	2	112	2	112	y	ENSMUSG00000030706.18	Mrpl48	chr7	protein_coding	mitochondrial ribosomal protein L48
known_NIR_16263	chr7	100223721	100240418	-	100223721	100257098	A5SS	ENSMUST00000146003.9	known	0.00	0	8	0	8	n	0.43	3	4	3	4	n	0.05	2	35	2	35	y	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.08	1	12	1	12	n	0.06	1	17	1	17	n	0.06	1	15	1	15	n	0.25	2	6	2	6	n	0.10	2	18	2	18	y	0.00	0	13	0	13	n	0.17	2	10	2	10	y	ENSMUSG00000030706.18	Mrpl48	chr7	protein_coding	mitochondrial ribosomal protein L48
known_NIR_16264	chr7	100223721	100256765	-	100223721	100232197	5pMXE	ENSMUST00000150042.8	known	0.03	3	100	3	100	y	0.01	1	114	1	114	n	0.05	3	63	3	63	y	0.07	7	92	7	92	y	0.11	11	90	11	90	y	0.10	3	27	3	27	y	0.03	4	121	4	121	y	0.03	1	34	1	34	n	0.02	2	79	2	79	y	0.04	5	129	5	129	y	0.01	1	83	1	83	n	0.01	1	112	1	112	n	ENSMUSG00000030706.18	Mrpl48	chr7	protein_coding	mitochondrial ribosomal protein L48
known_NIR_16265	chr7	100223721	100256765	-	100223721	100257098	A5SS	ENSMUST00000146003.9	known	0.27	3	8	3	8	y	0.20	1	4	1	4	n	0.08	3	35	3	35	y	0.37	7	12	7	12	y	0.48	11	12	11	12	y	0.20	3	12	3	12	y	0.19	4	17	4	17	y	0.06	1	15	1	15	n	0.25	2	6	2	6	n	0.22	5	18	5	18	y	0.07	1	13	1	13	n	0.09	1	10	1	10	n	ENSMUSG00000030706.18	Mrpl48	chr7	protein_coding	mitochondrial ribosomal protein L48
known_NIR_16266	chr7	100223721	100257098	-	100223721	100232197	5pMXE	ENSMUST00000150042.8	known	0.07	8	100	8	100	y	0.03	4	114	4	114	y	0.36	35	63	35	63	y	0.12	12	92	12	92	y	0.12	12	90	12	90	y	0.31	12	27	12	27	y	0.12	17	121	17	121	y	0.31	15	34	15	34	y	0.07	6	79	6	79	y	0.12	18	129	18	129	y	0.14	13	83	13	83	y	0.08	10	112	10	112	y	ENSMUSG00000030706.18	Mrpl48	chr7	protein_coding	mitochondrial ribosomal protein L48
known_NIR_16267	chr7	100277664;100279150	100279045;100280949	+	100277664;100278978	100278873;100280949	MXE	ENSMUST00000107048.8	known	0.75	70.0	23.5	64;76	24;23	y	0.68	51.0	24.0	40;62	26;22	y	0.81	155.0	37.5	115;195	38;37	y	0.65	92.0	48.5	72;112	45;52	y	0.76	125.5	40.0	115;136	39;41	y	0.80	90.0	22.5	70;110	19;26	y	0.74	108.5	38.5	77;140	31;46	y	0.69	70.5	31.0	58;83	23;39	y	0.74	64.5	22.5	58;71	20;25	y	0.67	84.5	41.0	52;117	33;49	y	0.73	62.0	23.5	46;78	28;19	y	0.78	105.5	30.5	89;122	25;36	y	ENSMUSG00000030704.15	Rab6a	chr7	protein_coding	RAB6A, member RAS oncogene family
known_NIR_16268	chr7	100294876;100299239	100299135;100302861	-	100294876	100302861	cassetteExon	ENSMUST00000107046.8	known	0.09	6.0	58	4;8	58	y	0.10	8.5	73	8;9	73	y	0.10	5.5	51	7;4	51	y	0.09	6.0	61	7;5	61	y	0.10	8.0	76	8;8	76	y	0.01	0.5	36	1;0	36	n	0.14	14.5	87	11;18	87	y	0.05	2.0	35	3;1	35	n	0.05	3.5	62	3;4	62	y	0.08	11.5	134	13;10	134	y	0.08	7.0	83	8;6	83	y	0.06	4.5	65	2;7	65	y	ENSMUSG00000030701.18	Plekhb1	chr7	protein_coding	pleckstrin homology domain containing, family B (evectins) member 1
known_NIR_16269	chr7	100306017	100307510	-	100306017	100307500	A5SS	ENSMUST00000107044.10	known	0.09	5	50	5	50	y	0.10	5	45	5	45	y	0.15	7	39	7	39	y	0.02	1	43	1	43	n	0.14	10	62	10	62	y	0.14	3	19	3	19	y	0.09	7	75	7	75	y	0.03	1	30	1	30	n	0.18	10	47	10	47	y	0.08	9	103	9	103	y	0.11	6	48	6	48	y	0.04	3	68	3	68	y	ENSMUSG00000030701.18	Plekhb1	chr7	protein_coding	pleckstrin homology domain containing, family B (evectins) member 1
known_NIR_16270	chr7	100356100	100436011	+	100356100	100363322	3pMXE	ENSMUST00000208387.2	known	1.00	7	0	7	0	n	1.00	7	0	7	0	n	0.75	6	2	6	2	n	1.00	24	0	24	0	n	0.77	10	3	10	3	y	1.00	10	0	10	0	n	1.00	12	0	12	0	n	1.00	9	0	9	0	n	1.00	9	0	9	0	n	1.00	23	0	23	0	n	1.00	10	0	10	0	n	0.94	17	1	17	1	n	ENSMUSG00000029461.18	Fam168a	chr7	protein_coding	family with sequence similarity 168, member A
known_NIR_16271	chr7	100648307	100660919	-	100648307	100652771	5pMXE	ENSMUST00000208340.2	known	0.00	0	17	0	17	n	0.00	0	25	0	25	n	0.00	0	58	0	58	n	0.00	0	42	0	42	n	0.07	3	39	3	39	y	0.07	2	26	2	26	y	0.06	2	34	2	34	y	0.07	2	27	2	27	y	0.00	0	28	0	28	n	0.00	0	31	0	31	n	0.00	0	23	0	23	n	0.00	0	28	0	28	n	ENSMUSG00000032860.6	P2ry2	chr7	protein_coding	purinergic receptor P2Y, G-protein coupled 2
known_NIR_16272	chr7	100648307	100660919	-	100648307;100652961	100652771;100660919	ES	ENSMUST00000037540.5	known	0.00	0	23.0	0	17;29	n	0.00	0	19.5	0	25;14	n	0.00	0	47.0	0	58;36	n	0.00	0	35.0	0	42;28	n	0.08	3	35.5	3	39;32	y	0.09	2	20.5	2	26;15	y	0.05	2	34.5	2	34;35	y	0.08	2	24.0	2	27;21	y	0.00	0	18.5	0	28;9	n	0.00	0	28.0	0	31;25	n	0.00	0	19.0	0	23;15	n	0.00	0	24.5	0	28;21	n	ENSMUSG00000032860.6	P2ry2	chr7	protein_coding	purinergic receptor P2Y, G-protein coupled 2
known_NIR_16273	chr7	100847816	100852928	+	100847816	100883079	A3SS	ENSMUST00000032931.9	known	0.04	1	22	1	22	n	0.08	1	11	1	11	n	0.04	1	24	1	24	n	0.11	4	33	4	33	y	0.04	1	22	1	22	n	0.00	0	20	0	20	n	0.04	1	23	1	23	n	0.08	3	36	3	36	y	0.00	0	15	0	15	n	0.04	1	26	1	26	n	0.12	3	22	3	22	y	0.00	0	39	0	39	n	ENSMUSG00000030691.16	Fchsd2	chr7	protein_coding	FCH and double SH3 domains 2
known_NIR_16274	chr7	100943191	100945328	-	100943191;100944128	100944066;100945328	ES	ENSMUST00000120267.9	known	0.52	7	6.5	7	5;8	y	0.50	5	5.0	5	5;5	y	0.41	11	16.0	11	19;13	y	0.46	9	10.5	9	10;11	y	0.63	12	7.0	12	5;9	y	0.10	2	17.5	2	15;20	y	0.22	5	18.0	5	17;19	y	0.26	5	14.5	5	15;14	y	0.54	7	6.0	7	8;4	y	0.55	8	6.5	8	4;9	y	0.35	3	5.5	3	7;4	y	0.32	4	8.5	4	9;8	y	ENSMUSG00000047767.18	Atg16l2	chr7	protein_coding	autophagy related 16-like 2 (S. cerevisiae)
known_NIR_16275	chr7	100946440	100949319	-	100946440;100948315	100948213;100949319	ES	ENSMUST00000120267.9	known	0.20	3	12.0	3	13;11	y	0.00	0	11.5	0	11;12	n	0.02	1	40.5	1	34;47	n	0.00	0	22.0	0	20;24	n	0.04	1	25.0	1	29;21	n	0.07	2	28.5	2	26;31	y	0.03	1	28.5	1	21;36	n	0.04	1	23.0	1	25;21	n	0.12	2	14.5	2	13;16	y	0.04	1	22.0	1	25;19	n	0.08	1	11.0	1	14;8	n	0.09	2	20.5	2	24;17	y	ENSMUSG00000047767.18	Atg16l2	chr7	protein_coding	autophagy related 16-like 2 (S. cerevisiae)
known_NIR_16276	chr7	100946440	100949319	-	100948315	100949319	3pMXE	ENSMUST00000207121.2	known	0.21	3	11	3	11	y	0.00	0	12	0	12	n	0.02	1	47	1	47	n	0.00	0	24	0	24	n	0.05	1	21	1	21	n	0.06	2	31	2	31	y	0.03	1	36	1	36	n	0.05	1	21	1	21	n	0.11	2	16	2	16	y	0.05	1	19	1	19	n	0.11	1	8	1	8	n	0.11	2	17	2	17	y	ENSMUSG00000047767.18	Atg16l2	chr7	protein_coding	autophagy related 16-like 2 (S. cerevisiae)
known_NIR_16277	chr7	100949418	100951104	-	100949418	100951108	A5SS	ENSMUST00000120267.9	known	0.12	2	15	2	15	y	0.13	2	13	2	13	y	0.00	0	33	0	33	n	0.00	0	17	0	17	n	0.12	2	15	2	15	y	0.13	2	13	2	13	y	0.25	4	12	4	12	y	0.05	1	19	1	19	n	0.23	3	10	3	10	y	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.11	2	16	2	16	y	ENSMUSG00000047767.18	Atg16l2	chr7	protein_coding	autophagy related 16-like 2 (S. cerevisiae)
known_NIR_16278	chr7	100970757	100970921	+	100970559	100970921	A5SS	ENSMUST00000163799.9	known	0.01	15	1657	15	1657	y	0.01	14	1664	14	1664	y	0.00	4	1426	4	1426	y	0.00	4	1962	4	1962	y	0.01	19	2477	19	2477	y	0.01	9	1152	9	1152	y	0.01	17	1851	17	1851	y	0.00	5	1165	5	1165	y	0.00	6	1291	6	1291	y	0.00	8	2289	8	2289	y	0.00	5	1829	5	1829	y	0.00	10	2058	10	2058	y	ENSMUSG00000030688.16	Stard10	chr7	protein_coding	START domain containing 10
known_NIR_16279	chr7	100971102	100991705	+	100971240	100991705	A5SS	ENSMUST00000163799.9	known	0.00	0	3094	0	3094	n	0.00	0	3182	0	3182	n	0.00	0	2597	0	2597	n	0.00	0	3380	0	3380	n	0.00	0	3904	0	3904	n	0.00	0	1946	0	1946	n	0.00	0	3869	0	3869	n	0.00	0	2169	0	2169	n	0.00	2	2740	2	2740	y	0.00	0	4482	0	4482	n	0.00	0	3547	0	3547	n	0.00	0	3938	0	3938	n	ENSMUSG00000030688.16	Stard10	chr7	protein_coding	START domain containing 10
known_NIR_16280	chr7	100991836	100992391	+	100991852	100992391	A5SS	ENSMUST00000163799.9	known	0.01	43	3110	43	3110	y	0.00	0	3401	0	3401	n	0.01	24	2634	24	2634	y	0.01	28	3101	28	3101	y	0.01	51	3948	51	3948	y	0.01	21	2036	21	2036	y	0.01	53	4034	53	4034	y	0.01	25	2017	25	2017	y	0.02	43	2754	43	2754	y	0.01	63	4353	63	4353	y	0.01	38	3578	38	3578	y	0.00	0	3802	0	3802	n	ENSMUSG00000030688.16	Stard10	chr7	protein_coding	START domain containing 10
known_NIR_16281	chr7	100992494	100994842	+	100992494	100993124	3pMXE	ENSMUST00000174083.2	known	0.00	4	3741	4	3741	y	0.00	4	4217	4	4217	y	0.00	9	3203	9	3203	y	0.00	0	3750	0	3750	n	0.00	8	4817	8	4817	y	0.00	6	2333	6	2333	y	0.00	13	4667	13	4667	y	0.00	0	2514	0	2514	n	0.00	9	3457	9	3457	y	0.00	12	5262	12	5262	y	0.00	0	4419	0	4419	n	0.00	10	4469	10	4469	y	ENSMUSG00000030688.16	Stard10	chr7	protein_coding	START domain containing 10
known_NIR_16282	chr7	100992494	100994842	+	100992494;100993241	100993124;100994842	ES	ENSMUST00000163799.9	known	0.00	4	3322.5	4	3741;2904	y	0.00	4	3850.0	4	4217;3483	y	0.00	9	2763.5	9	3203;2324	y	0.00	0	3333.5	0	3750;2917	n	0.00	8	4281.0	8	4817;3745	y	0.00	6	2048.0	6	2333;1763	y	0.00	13	4273.0	13	4667;3879	y	0.00	0	2203.5	0	2514;1893	n	0.00	9	3054.0	9	3457;2651	y	0.00	12	4729.5	12	5262;4197	y	0.00	0	4034.5	0	4419;3650	n	0.00	10	4004.0	10	4469;3539	y	ENSMUSG00000030688.16	Stard10	chr7	protein_coding	START domain containing 10
known_NIR_16283	chr7	100992494;100994894	100994842;100995099	+	100992494;100993241	100993124;100995099	MXE	ENSMUST00000167888.9	known	0.50	1920.5	1910.0	4;3837	3741;79	y	0.52	2335.5	2165.5	4;4667	4217;114	y	0.49	1557.0	1637.0	9;3105	3203;71	y	0.50	1922.0	1920.5	0;3844	3750;91	n	0.51	2561.5	2459.0	8;5115	4817;101	y	0.50	1183.5	1178.5	6;2361	2333;24	y	0.53	2672.5	2378.5	13;5332	4667;90	y	0.50	1296.0	1273.0	0;2592	2514;32	n	0.50	1747.0	1764.5	9;3485	3457;72	y	0.51	2788.5	2688.5	12;5565	5262;115	y	0.52	2407.0	2253.0	0;4814	4419;87	n	0.51	2385.5	2287.0	10;4761	4469;105	y	ENSMUSG00000030688.16	Stard10	chr7	protein_coding	START domain containing 10
known_NIR_16284	chr7	100993241	100995099	+	100993241;100994894	100994842;100995099	ES	ENSMUST00000163799.9	known	0.02	79	3370.5	79	2904;3837	y	0.03	114	4075.0	114	3483;4667	y	0.03	71	2714.5	71	2324;3105	y	0.03	91	3380.5	91	2917;3844	y	0.02	101	4430.0	101	3745;5115	y	0.01	24	2062.0	24	1763;2361	y	0.02	90	4605.5	90	3879;5332	y	0.01	32	2242.5	32	1893;2592	y	0.02	72	3068.0	72	2651;3485	y	0.02	115	4881.0	115	4197;5565	y	0.02	87	4232.0	87	3650;4814	y	0.02	105	4150.0	105	3539;4761	y	ENSMUSG00000030688.16	Stard10	chr7	protein_coding	START domain containing 10
known_NIR_16285	chr7	101010546	101016228	+	100997406	101016228	A5SS	ENSMUST00000107010.9	known	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	13	0	13	n	0.25	1	3	1	3	n	0.08	1	11	1	11	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.30	3	7	3	7	y	0.33	1	2	1	2	n	0.00	0	3	0	3	n	ENSMUSG00000032812.19	Arap1	chr7	protein_coding	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
known_NIR_16286	chr7	101011443	101016228	+	100997406	101016228	A5SS	ENSMUST00000107010.9	known	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.13	2	13	2	13	y	0.00	0	3	0	3	n	0.15	2	11	2	11	y	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000032812.19	Arap1	chr7	protein_coding	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
known_NIR_16287	chr7	101027739	101034069	+	101022708	101034069	A5SS	ENSMUST00000107010.9	known	0.77	23	7	23	7	y	0.59	17	12	17	12	y	0.44	25	32	25	32	y	0.83	43	9	43	9	y	0.71	37	15	37	15	y	0.39	18	28	18	28	y	0.77	37	11	37	11	y	0.36	12	21	12	21	y	0.90	26	3	26	3	y	0.65	34	18	34	18	y	0.70	16	7	16	7	y	0.78	35	10	35	10	y	ENSMUSG00000032812.19	Arap1	chr7	protein_coding	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
known_NIR_16288	chr7	101027739	101034759	+	101034247	101034759	A5SS&ES	ENSMUST00000107010.9	known	0.10	4	36	4	36	y	0.05	1	21	1	21	n	0.00	0	52	0	52	n	0.05	3	56	3	56	y	0.06	5	84	5	84	y	0.06	2	29	2	29	y	0.06	3	45	3	45	y	0.06	2	32	2	32	y	0.10	5	43	5	43	y	0.11	6	51	6	51	y	0.00	0	26	0	26	n	0.12	7	51	7	51	y	ENSMUSG00000032812.19	Arap1	chr7	protein_coding	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
known_NIR_16289	chr7	101027739;101034247	101034069;101034759	+	101027739	101034759	cassetteExon	ENSMUST00000084895.12	known	0.88	29.5	4	23;36	4	y	0.95	19.0	1	17;21	1	n	1.00	38.5	0	25;52	0	n	0.94	49.5	3	43;56	3	y	0.92	60.5	5	37;84	5	y	0.92	23.5	2	18;29	2	y	0.93	41.0	3	37;45	3	y	0.92	22.0	2	12;32	2	y	0.87	34.5	5	26;43	5	y	0.88	42.5	6	34;51	6	y	1.00	21.0	0	16;26	0	n	0.86	43.0	7	35;51	7	y	ENSMUSG00000032812.19	Arap1	chr7	protein_coding	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
known_NIR_16290	chr7	101033313	101034069	+	101022708	101034069	A5SS	ENSMUST00000107010.9	known	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	32	0	32	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.00	0	28	0	28	n	0.08	1	11	1	11	n	0.09	2	21	2	21	y	0.00	0	3	0	3	n	0.00	0	18	0	18	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	ENSMUSG00000032812.19	Arap1	chr7	protein_coding	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
known_NIR_16291	chr7	101033313	101034069	+	101027739	101034069	A5SS	ENSMUST00000127873.8	known	0.00	0	23	0	23	n	0.00	0	17	0	17	n	0.00	0	25	0	25	n	0.00	0	43	0	43	n	0.00	0	37	0	37	n	0.00	0	18	0	18	n	0.03	1	37	1	37	n	0.14	2	12	2	12	y	0.00	0	26	0	26	n	0.00	0	34	0	34	n	0.00	0	16	0	16	n	0.00	0	35	0	35	n	ENSMUSG00000032812.19	Arap1	chr7	protein_coding	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
known_NIR_16292	chr7	101035480	101035641	+	101035480	101035599	A3SS	ENSMUST00000107010.9	known	0.00	0	23	0	23	n	0.04	1	25	1	25	n	0.00	0	54	0	54	n	0.00	0	60	0	60	n	0.00	0	82	0	82	n	0.03	1	37	1	37	n	0.00	0	48	0	48	n	0.00	0	43	0	43	n	0.00	0	46	0	46	n	0.00	0	45	0	45	n	0.00	0	42	0	42	n	0.05	2	41	2	41	y	ENSMUSG00000032812.19	Arap1	chr7	protein_coding	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
known_NIR_16293	chr7	101043674	101043941	+	101042836	101043941	A5SS	ENSMUST00000107010.9	known	0.00	0	38	0	38	n	0.00	0	60	0	60	n	0.00	0	61	0	61	n	0.00	0	61	0	61	n	0.00	0	93	0	93	n	0.00	0	41	0	41	n	0.03	2	64	2	64	y	0.00	0	48	0	48	n	0.00	0	46	0	46	n	0.00	0	69	0	69	n	0.00	0	51	0	51	n	0.00	0	55	0	55	n	ENSMUSG00000032812.19	Arap1	chr7	protein_coding	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
known_NIR_16294	chr7	101053632;101054172	101054140;101057254	+	101053632	101057254	cassetteExon	ENSMUST00000107010.9	known	0.00	0.5	100	0;1	100	n	0.01	1.5	123	2;1	123	n	0.02	2.5	110	2;3	110	y	0.01	1.0	110	1;1	110	n	0.06	7.0	120	7;7	120	y	0.06	4.0	66	4;4	66	y	0.06	6.5	95	8;5	95	y	0.08	6.5	77	7;6	77	y	0.01	0.5	86	0;1	86	n	0.01	0.5	98	0;1	98	n	0.00	0.5	136	1;0	136	n	0.00	0.0	108	0;0	108	n	ENSMUSG00000032812.19	Arap1	chr7	protein_coding	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
known_NIR_16295	chr7	101100675	101130578	+	101100675;101110748	101110687;101130578	ES	ENSMUST00000084894.15	known	1.00	3	0.0	3	0;0	n	0.67	1	0.5	1	1;0	n	0.22	2	7.0	2	6;8	y	0.00	0	3.5	0	2;5	n	0.40	3	4.5	3	4;5	y	0.83	5	1.0	5	2;0	n	0.56	5	4.0	5	3;5	y	0.33	1	2.0	1	3;1	n	0.67	2	1.0	2	1;1	n	0.20	1	4.0	1	5;3	n	0.80	2	0.5	2	0;1	n	1.00	4	0.0	4	0;0	n	ENSMUSG00000030653.18	Gm45837	chr7	protein_coding	predicted gene 45837
known_NIR_16296	chr7	101152149	101152494	+	101152149	101152506	A3SS	ENSMUST00000084894.15	known	0.00	0	13	0	13	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	29	0	29	n	0.11	1	8	1	8	n	0.17	2	10	2	10	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.14	1	6	1	6	n	0.00	0	9	0	9	n	ENSMUSG00000030653.18	Gm45837	chr7	protein_coding	predicted gene 45837
known_NIR_16297	chr7	101355793;101360707	101360618;101371912	+	101355793	101371912	cassetteExon	ENSMUST00000001884.14	known	0.04	2.5	67	2;3	67	y	0.00	0.0	60	0;0	60	n	0.00	0.0	76	0;0	76	n	0.01	0.5	71	1;0	71	n	0.04	3.5	90	3;4	90	y	0.03	2.0	68	1;3	68	n	0.02	1.5	98	1;2	98	n	0.02	1.0	60	0;2	60	n	0.02	1.5	59	0;3	59	n	0.01	0.5	99	0;1	99	n	0.01	0.5	78	0;1	78	n	0.01	0.5	68	0;1	68	n	ENSMUSG00000001829.18	Clpb	chr7	protein_coding	ClpB caseinolytic peptidase B
known_NIR_16298	chr7	101412902	101418009	+	101412902	101422287	A3SS	ENSMUST00000001884.14	known	0.00	0	73	0	73	n	0.00	0	84	0	84	n	0.00	0	97	0	97	n	0.00	0	84	0	84	n	0.02	3	119	3	119	y	0.00	0	70	0	70	n	0.00	0	120	0	120	n	0.00	0	57	0	57	n	0.01	1	97	1	97	n	0.00	0	152	0	152	n	0.00	0	122	0	122	n	0.00	0	126	0	126	n	ENSMUSG00000001829.18	Clpb	chr7	protein_coding	ClpB caseinolytic peptidase B
known_NIR_16299	chr7	101472610	101473100	-	101472610;101472853	101472720;101473100	ES	ENSMUST00000035836.14	known	0.00	0	39.5	0	57;22	n	0.00	0	47.0	0	59;35	n	0.03	2	56.5	2	50;63	y	0.00	0	37.5	0	48;27	n	0.05	3	55.5	3	76;35	y	0.03	1	29.0	1	37;21	n	0.02	1	62.0	1	91;33	n	0.06	2	32.0	2	45;19	y	0.03	1	37.5	1	53;22	n	0.03	2	58.5	2	85;32	y	0.03	1	33.5	1	37;30	n	0.02	1	43.0	1	60;26	n	ENSMUSG00000032737.14	Inppl1	chr7	protein_coding	inositol polyphosphate phosphatase-like 1
known_NIR_16300	chr7	101486158	101486928	-	101486158	101487096	A5SS	ENSMUST00000035836.14	known	1.00	3	0	3	0	n	1.00	2	0	2	0	n	1.00	2	0	2	0	n	0.90	9	1	9	1	n	1.00	5	0	5	0	n	1.00	3	0	3	0	n	1.00	10	0	10	0	n	1.00	5	0	5	0	n	0.89	8	1	8	1	n	0.89	16	2	16	2	y	1.00	6	0	6	0	n	0.71	10	4	10	4	y	ENSMUSG00000032737.14	Inppl1	chr7	protein_coding	inositol polyphosphate phosphatase-like 1
known_NIR_16301	chr7	101493027	101494411	-	101493031	101494411	A3SS	ENSMUST00000094141.7	known	0.07	3	42	3	42	y	0.11	5	42	5	42	y	0.00	0	13	0	13	n	0.16	4	21	4	21	y	0.21	9	33	9	33	y	0.00	0	2	0	2	n	0.25	6	18	6	18	y	0.10	2	18	2	18	y	0.21	5	19	5	19	y	0.19	4	17	4	17	y	0.23	7	23	7	23	y	0.00	0	12	0	12	n	ENSMUSG00000032725.11	Folr2	chr7	protein_coding	folate receptor 2 (fetal)
known_NIR_16302	chr7	101545657	101546940	+	101530609	101546940	A5SS	ENSMUST00000106978.8	known	0.24	5	16	5	16	y	0.55	6	5	6	5	y	0.57	8	6	8	6	y	0.50	6	6	6	6	y	0.57	8	6	8	6	y	0.62	5	3	5	3	n	0.35	8	15	8	15	y	0.55	6	5	6	5	y	0.61	14	9	14	9	y	0.38	6	10	6	10	y	0.50	7	7	7	7	y	0.42	5	7	5	7	y	ENSMUSG00000030649.19	Anapc15	chr7	protein_coding	anaphase promoting complex C subunit 15
known_NIR_16303	chr7	101545657	101547149	+	101547024	101547149	A5SS&ES	ENSMUST00000209334.2	known	0.00	0	44	0	44	n	0.00	0	42	0	42	n	0.00	0	42	0	42	n	0.00	0	58	0	58	n	0.00	0	59	0	59	n	0.08	2	23	2	23	y	0.02	1	62	1	62	n	0.00	0	31	0	31	n	0.00	0	46	0	46	n	0.04	2	52	2	52	y	0.00	0	60	0	60	n	0.02	1	47	1	47	n	ENSMUSG00000030649.19	Anapc15	chr7	protein_coding	anaphase promoting complex C subunit 15
known_NIR_16304	chr7	101545657;101547024	101546940;101547149	+	101545657	101547149	cassetteExon	ENSMUST00000106973.8	known	1.00	24.5	0	5;44	0	n	1.00	24.0	0	6;42	0	n	1.00	25.0	0	8;42	0	n	1.00	32.0	0	6;58	0	n	1.00	33.5	0	8;59	0	n	0.88	14.0	2	5;23	2	y	0.97	35.0	1	8;62	1	n	1.00	18.5	0	6;31	0	n	1.00	30.0	0	14;46	0	n	0.94	29.0	2	6;52	2	y	1.00	33.5	0	7;60	0	n	0.96	26.0	1	5;47	1	n	ENSMUSG00000030649.19	Anapc15	chr7	protein_coding	anaphase promoting complex C subunit 15
known_NIR_16305	chr7	101546567	101546940	+	101530609	101546940	A5SS	ENSMUST00000106978.8	known	0.20	4	16	4	16	y	0.58	7	5	7	5	y	0.33	3	6	3	6	n	0.45	5	6	5	6	y	0.33	3	6	3	6	n	0.50	3	3	3	3	n	0.21	4	15	4	15	y	0.29	2	5	2	5	n	0.10	1	9	1	9	n	0.29	4	10	4	10	y	0.22	2	7	2	7	n	0.36	4	7	4	7	y	ENSMUSG00000030649.19	Anapc15	chr7	protein_coding	anaphase promoting complex C subunit 15
known_NIR_16306	chr7	101546567	101546940	+	101545657	101546940	A5SS	ENSMUST00000035395.14	known	0.44	4	5	4	5	n	0.54	7	6	7	6	y	0.27	3	8	3	8	y	0.45	5	6	5	6	y	0.27	3	8	3	8	y	0.38	3	5	3	5	n	0.33	4	8	4	8	y	0.25	2	6	2	6	n	0.07	1	14	1	14	n	0.40	4	6	4	6	y	0.22	2	7	2	7	n	0.44	4	5	4	5	n	ENSMUSG00000030649.19	Anapc15	chr7	protein_coding	anaphase promoting complex C subunit 15
known_NIR_16307	chr7	101547024	101547154	+	101547024	101547149	A3SS	ENSMUST00000209334.2	known	0.20	11	44	11	44	y	0.21	11	42	11	42	y	0.00	0	42	0	42	n	0.08	5	58	5	58	y	0.14	10	59	10	59	y	0.04	1	23	1	23	n	0.10	7	62	7	62	y	0.06	2	31	2	31	y	0.16	9	46	9	46	y	0.16	10	52	10	52	y	0.14	10	60	10	60	y	0.16	9	47	9	47	y	ENSMUSG00000030649.19	Anapc15	chr7	protein_coding	anaphase promoting complex C subunit 15
known_NIR_16308	chr7	101548235	101548401	+	101548244	101548401	A5SS	ENSMUST00000106978.8	known	0.00	0	37	0	37	n	0.00	0	42	0	42	n	0.10	5	47	5	47	y	0.00	0	46	0	46	n	0.00	0	49	0	49	n	0.10	4	36	4	36	y	0.00	0	75	0	75	n	0.00	0	22	0	22	n	0.00	0	50	0	50	n	0.00	0	72	0	72	n	0.00	0	60	0	60	n	0.00	0	50	0	50	n	ENSMUSG00000030649.19	Anapc15	chr7	protein_coding	anaphase promoting complex C subunit 15
known_NIR_16309	chr7	101548244	101550139	+	101548244	101548401	3pMXE	ENSMUST00000106978.8	known	0.05	2	37	2	37	y	0.00	0	42	0	42	n	0.00	0	47	0	47	n	0.00	0	46	0	46	n	0.00	0	49	0	49	n	0.00	0	36	0	36	n	0.00	0	75	0	75	n	0.00	0	22	0	22	n	0.00	0	50	0	50	n	0.00	0	72	0	72	n	0.00	0	60	0	60	n	0.00	0	50	0	50	n	ENSMUSG00000030649.19	Anapc15	chr7	protein_coding	anaphase promoting complex C subunit 15
known_NIR_16310	chr7	101564974	101582971	-	101564974	101569844	5pMXE	ENSMUST00000163903.8	known	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	17	0	17	n	0.12	1	7	1	7	n	0.00	0	10	0	10	n	0.06	1	16	1	16	n	0.00	0	9	0	9	n	0.17	2	10	2	10	y	ENSMUSG00000064307.14	Lrrc51	chr7	protein_coding	leucine rich repeat containing 51
known_NIR_16311	chr7	101564974	101582971	-	101564974;101569981	101569844;101582971	ES	ENSMUST00000106966.8	known	0.00	0	6.5	0	9;4	n	0.00	0	7.0	0	13;1	n	0.00	0	4.5	0	7;2	n	0.00	0	8.5	0	15;2	n	0.00	0	11.0	0	13;9	n	0.00	0	3.5	0	6;1	n	0.00	0	12.0	0	17;7	n	0.18	1	4.5	1	7;2	n	0.00	0	6.5	0	10;3	n	0.09	1	10.5	1	16;5	n	0.00	0	9.0	0	9;9	n	0.20	2	8.0	2	10;6	y	ENSMUSG00000064307.14	Lrrc51	chr7	protein_coding	leucine rich repeat containing 51
known_NIR_16312	chr7	101569981	101582957	-	101569981	101570711	A5SS&ES	ENSMUST00000078448.11	known	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.75	3	1	3	1	n	0.40	2	3	2	3	n	0.25	3	9	3	9	y	0.50	2	2	2	2	n	0.00	0	5	0	5	n	ENSMUSG00000064307.14	Lrrc51	chr7	protein_coding	leucine rich repeat containing 51
known_NIR_16313	chr7	101569981	101582957	-	101569981	101582971	A5SS	ENSMUST00000106966.8	known	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.60	3	2	3	2	n	0.40	2	3	2	3	n	0.38	3	5	3	5	n	0.18	2	9	2	9	y	0.00	0	6	0	6	n	ENSMUSG00000064307.14	Lrrc51	chr7	protein_coding	leucine rich repeat containing 51
known_NIR_16314	chr7	101569981	101582971	-	101569981;101570773	101570711;101582971	ES	ENSMUST00000078448.11	known	0.44	4	5.0	4	4;6	y	0.33	1	2.0	1	3;1	n	0.50	2	2.0	2	4;0	n	0.67	2	1.0	2	2;0	n	0.78	9	2.5	9	4;1	n	0.40	1	1.5	1	1;2	n	0.64	7	4.0	7	4;4	y	0.57	2	1.5	2	1;2	n	0.55	3	2.5	3	3;2	n	0.34	5	9.5	5	9;10	y	0.86	9	1.5	9	2;1	n	0.67	6	3.0	6	5;1	n	ENSMUSG00000064307.14	Lrrc51	chr7	protein_coding	leucine rich repeat containing 51
known_NIR_16315	chr7	101619561	101626587	+	101583382	101626587	A5SS	ENSMUST00000210679.2	known	0.33	1	2	1	2	n	1.00	4	0	4	0	n	0.67	4	2	4	2	n	0.83	5	1	5	1	n	0.79	11	3	11	3	y	0.75	3	1	3	1	n	0.33	3	6	3	6	n	0.70	7	3	7	3	y	0.57	4	3	4	3	n	0.64	7	4	7	4	y	0.45	5	6	5	6	y	0.78	7	2	7	2	n	ENSMUSG00000066306.14	Numa1	chr7	protein_coding	nuclear mitotic apparatus protein 1
known_NIR_16316	chr7	101619561	101626587	+	101583524	101626587	A5SS	ENSMUST00000209639.2	known	1.00	1	0	1	0	n	1.00	4	0	4	0	n	0.80	4	1	4	1	n	0.83	5	1	5	1	n	0.85	11	2	11	2	y	0.60	3	2	3	2	n	0.60	3	2	3	2	n	1.00	7	0	7	0	n	1.00	4	0	4	0	n	0.78	7	2	7	2	n	1.00	5	0	5	0	n	0.88	7	1	7	1	n	ENSMUSG00000066306.14	Numa1	chr7	protein_coding	nuclear mitotic apparatus protein 1
known_NIR_16317	chr7	101619561	101626587	+	101619176	101626587	A5SS	ENSMUST00000084852.13	known	0.50	1	1	1	1	n	0.80	4	1	4	1	n	0.44	4	5	4	5	n	1.00	5	0	5	0	n	0.73	11	4	11	4	y	1.00	3	0	3	0	n	0.50	3	3	3	3	n	1.00	7	0	7	0	n	1.00	4	0	4	0	n	0.88	7	1	7	1	n	1.00	5	0	5	0	n	0.78	7	2	7	2	n	ENSMUSG00000066306.14	Numa1	chr7	protein_coding	nuclear mitotic apparatus protein 1
known_NIR_16318	chr7	101620034	101626587	+	101583382	101626587	A5SS	ENSMUST00000210679.2	known	0.75	6	2	6	2	n	1.00	5	0	5	0	n	0.50	2	2	2	2	n	0.89	8	1	8	1	n	0.81	13	3	13	3	y	0.67	2	1	2	1	n	0.57	8	6	8	6	y	0.67	6	3	6	3	n	0.57	4	3	4	3	n	0.67	8	4	8	4	y	0.54	7	6	7	6	y	0.71	5	2	5	2	n	ENSMUSG00000066306.14	Numa1	chr7	protein_coding	nuclear mitotic apparatus protein 1
known_NIR_16319	chr7	101620034	101626587	+	101583524	101626587	A5SS	ENSMUST00000209639.2	known	1.00	6	0	6	0	n	1.00	5	0	5	0	n	0.67	2	1	2	1	n	0.89	8	1	8	1	n	0.87	13	2	13	2	y	0.50	2	2	2	2	n	0.80	8	2	8	2	y	1.00	6	0	6	0	n	1.00	4	0	4	0	n	0.80	8	2	8	2	y	1.00	7	0	7	0	n	0.83	5	1	5	1	n	ENSMUSG00000066306.14	Numa1	chr7	protein_coding	nuclear mitotic apparatus protein 1
known_NIR_16320	chr7	101620034	101626587	+	101619176	101626587	A5SS	ENSMUST00000084852.13	known	0.86	6	1	6	1	n	0.83	5	1	5	1	n	0.29	2	5	2	5	n	1.00	8	0	8	0	n	0.76	13	4	13	4	y	1.00	2	0	2	0	n	0.73	8	3	8	3	y	1.00	6	0	6	0	n	1.00	4	0	4	0	n	0.89	8	1	8	1	n	1.00	7	0	7	0	n	0.71	5	2	5	2	n	ENSMUSG00000066306.14	Numa1	chr7	protein_coding	nuclear mitotic apparatus protein 1
known_NIR_16321	chr7	101620034	101626587	+	101619561	101626587	A5SS	ENSMUST00000210475.2	known	0.86	6	1	6	1	n	0.56	5	4	5	4	n	0.33	2	4	2	4	n	0.62	8	5	8	5	y	0.54	13	11	13	11	y	0.40	2	3	2	3	n	0.73	8	3	8	3	y	0.46	6	7	6	7	y	0.50	4	4	4	4	n	0.53	8	7	8	7	y	0.58	7	5	7	5	y	0.42	5	7	5	7	y	ENSMUSG00000066306.14	Numa1	chr7	protein_coding	nuclear mitotic apparatus protein 1
known_NIR_16322	chr7	101650866;101651543	101651502;101656693	+	101650866	101656693	cassetteExon	ENSMUST00000084852.13	known	0.92	44.0	4	54;34	4	y	0.84	31.5	6	38;25	6	y	0.85	55.0	10	67;43	10	y	0.87	48.5	7	55;42	7	y	0.96	77.0	3	88;66	3	y	0.97	33.5	1	35;32	1	n	0.96	70.5	3	78;63	3	y	0.98	45.5	1	49;42	1	n	1.00	46.5	0	59;34	0	n	0.85	64.5	11	69;60	11	y	0.87	39.5	6	45;34	6	y	0.94	59.0	4	67;51	4	y	ENSMUSG00000066306.14	Numa1	chr7	protein_coding	nuclear mitotic apparatus protein 1
known_NIR_16323	chr7	101666558	101667317	-	101666558;101666844	101666804;101667317	ES	ENSMUST00000094134.5	known	0.14	5	31.5	5	63;0	n	0.11	3	24.0	3	48;0	n	0.06	4	65.5	4	131;0	n	0.08	2	22.5	2	43;2	y	0.09	6	58.0	6	116;0	n	0.02	1	43.0	1	86;0	n	0.00	0	41.0	0	82;0	n	0.03	1	34.0	1	68;0	n	0.28	5	13.0	5	26;0	n	0.21	4	15.5	4	31;0	n	0.17	3	14.5	3	29;0	n	0.09	2	20.5	2	41;0	n	ENSMUSG00000070427.5	Il18bp	chr7	protein_coding	interleukin 18 binding protein
known_NIR_16324	chr7	101666558	101667317	-	101666558;101666871	101666804;101667317	ES	ENSMUST00000209844.2	known	0.12	5	36.5	5	63;10	y	0.10	3	27.5	3	48;7	y	0.05	4	70.5	4	131;10	y	0.07	2	26.0	2	43;9	y	0.08	6	68.0	6	116;20	y	0.02	1	49.0	1	86;12	n	0.00	0	49.5	0	82;17	n	0.03	1	36.5	1	68;5	n	0.24	5	15.5	5	26;5	y	0.19	4	17.0	4	31;3	y	0.16	3	16.0	3	29;3	y	0.08	2	24.5	2	41;8	y	ENSMUSG00000070427.5	Il18bp	chr7	protein_coding	interleukin 18 binding protein
known_NIR_16325	chr7	101666844	101667317	-	101666871	101667317	A3SS	ENSMUST00000209844.2	known	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.18	2	9	2	9	y	0.00	0	20	0	20	n	0.00	0	12	0	12	n	0.00	0	17	0	17	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	ENSMUSG00000070427.5	Il18bp	chr7	protein_coding	interleukin 18 binding protein
known_NIR_16326	chr7	101678339	101684514	-	101678339;101680808	101680701;101684514	ES	ENSMUST00000096639.12	known	0.00	0	52.5	0	53;52	n	0.00	0	32.0	0	28;36	n	0.02	2	79.0	2	90;68	y	0.00	0	62.0	0	64;60	n	0.00	0	94.0	0	100;88	n	0.04	2	47.5	2	56;39	y	0.01	1	84.0	1	94;74	n	0.03	1	37.5	1	39;36	n	0.00	0	40.0	0	41;39	n	0.01	1	75.0	1	76;74	n	0.00	0	40.5	0	39;42	n	0.03	2	61.5	2	67;56	y	ENSMUSG00000070426.13	Rnf121	chr7	protein_coding	ring finger protein 121
known_NIR_16327	chr7	101684622	101688757	-	101684668	101688757	A3SS	ENSMUST00000096639.12	known	0.00	0	38	0	38	n	0.03	1	34	1	34	n	0.00	0	67	0	67	n	0.03	2	59	2	59	y	0.09	9	93	9	93	y	0.00	0	52	0	52	n	0.05	4	73	4	73	y	0.01	1	67	1	67	n	0.10	4	35	4	35	y	0.02	1	52	1	52	n	0.03	1	32	1	32	n	0.07	3	41	3	41	y	ENSMUSG00000070426.13	Rnf121	chr7	protein_coding	ring finger protein 121
known_NIR_16328	chr7	101691871	101714474	-	101691871	101714273	5pMXE	ENSMUST00000096639.12	known	0.00	0	29	0	29	n	0.04	1	25	1	25	n	0.03	2	61	2	61	y	0.00	0	25	0	25	n	0.00	0	38	0	38	n	0.08	2	24	2	24	y	0.05	2	37	2	37	y	0.00	0	31	0	31	n	0.08	2	24	2	24	y	0.04	1	22	1	22	n	0.00	0	23	0	23	n	0.03	1	34	1	34	n	ENSMUSG00000070426.13	Rnf121	chr7	protein_coding	ring finger protein 121
known_NIR_16329	chr7	101715011	101720394	+	101715011	101719104	A3SS&ES	ENSMUST00000153176.8	known	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.67	2	1	2	1	n	0.17	2	10	2	10	y	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	7	0	7	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	ENSMUSG00000099481.7	Xndc1	chr7	protein_coding	Xrcc1 N-terminal domain containing 1
known_NIR_16330	chr7	101715011	101720394	+	101719198	101720394	A5SS&ES	ENSMUST00000146450.8	known	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.50	2	2	2	2	n	0.18	2	9	2	9	y	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	ENSMUSG00000099481.7	Xndc1	chr7	protein_coding	Xrcc1 N-terminal domain containing 1
known_NIR_16331	chr7	101715011	101720426	+	101715011	101719104	A3SS&ES	ENSMUST00000094130.4	known	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.00	0	10	0	10	n	0.18	2	9	2	9	y	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	ENSMUSG00000099481.7	Xndc1	chr7	protein_coding	Xrcc1 N-terminal domain containing 1
known_NIR_16332	chr7	101715011;101719198	101719104;101720394	+	101715011	101720394	cassetteExon	ENSMUST00000106950.8	known	1.00	6.0	0	6;6	0	n	1.00	4.5	0	3;6	0	n	0.43	1.5	2	1;2	2	n	0.83	9.5	2	10;9	2	y	1.00	7.0	0	9;5	0	n	1.00	5.0	0	6;4	0	n	1.00	8.5	0	7;10	0	n	1.00	4.0	0	1;7	0	n	0.78	3.5	1	2;5	1	n	1.00	5.5	0	7;4	0	n	0.60	1.5	1	2;1	1	n	1.00	2.5	0	2;3	0	n	ENSMUSG00000099481.7	Xndc1	chr7	protein_coding	Xrcc1 N-terminal domain containing 1
known_NIR_16333	chr7	101715149	101719104	+	101715011	101719104	A5SS	ENSMUST00000153176.8	known	0.14	1	6	1	6	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.17	2	10	2	10	y	0.00	0	9	0	9	n	0.14	1	6	1	6	n	0.22	2	7	2	7	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.12	1	7	1	7	n	0.50	2	2	2	2	n	0.33	1	2	1	2	n	ENSMUSG00000099481.7	Xndc1	chr7	protein_coding	Xrcc1 N-terminal domain containing 1
known_NIR_16334	chr7	101719198	101720394	+	101719198	101720426	A3SS	ENSMUST00000153176.8	known	0.86	6	1	6	1	n	0.86	6	1	6	1	n	0.67	2	1	2	1	n	0.82	9	2	9	2	y	1.00	5	0	5	0	n	1.00	4	0	4	0	n	1.00	10	0	10	0	n	1.00	7	0	7	0	n	1.00	5	0	5	0	n	0.80	4	1	4	1	n	1.00	1	0	1	0	n	1.00	3	0	3	0	n	ENSMUSG00000099481.7	Xndc1	chr7	protein_coding	Xrcc1 N-terminal domain containing 1
known_NIR_16335	chr7	101728104	101728212	+	101728025	101728212	A5SS	ENSMUST00000106950.8	known	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.13	2	13	2	13	y	0.00	0	2	0	2	n	0.10	1	9	1	9	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000099481.7	Xndc1	chr7	protein_coding	Xrcc1 N-terminal domain containing 1
known_NIR_16336	chr7	101730309	101730690	+	101729811	101730690	A5SS	ENSMUST00000106950.8	known	0.12	2	15	2	15	y	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.10	1	9	1	9	n	0.33	2	4	2	4	n	0.00	0	6	0	6	n	0.14	1	6	1	6	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	ENSMUSG00000099481.7	Xndc1	chr7	protein_coding	Xrcc1 N-terminal domain containing 1
known_NIR_16337	chr7	101755572	101756546	+	101755572	101755874	A3SS	ENSMUST00000033300.4	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.03	2	62	2	62	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030996.9	Art1	chr7	protein_coding	ADP-ribosyltransferase 1
known_NIR_16338	chr7	101825612	101829635	-	101825612	101829584	A5SS	ENSMUST00000210682.2	known	0.86	12	2	12	2	y	0.56	5	4	5	4	n	0.82	27	6	27	6	y	0.69	9	4	9	4	y	0.67	10	5	10	5	y	0.80	12	3	12	3	y	0.59	13	9	13	9	y	0.71	15	6	15	6	y	0.82	9	2	9	2	y	0.92	12	1	12	1	n	1.00	5	0	5	0	n	0.89	16	2	16	2	y	ENSMUSG00000063550.9	Nup98	chr7	protein_coding	nucleoporin 98
known_NIR_16339	chr7	101845095	101858946	-	101845095	101859225	A5SS	ENSMUST00000210682.2	known	0.00	0	1	0	1	n	-	-	-	-	-	-	0.10	2	19	2	19	y	0.38	3	5	3	5	n	0.43	3	4	3	4	n	0.35	6	11	6	11	y	0.50	4	4	4	4	n	0.44	4	5	4	5	n	0.00	0	7	0	7	n	0.33	2	4	2	4	n	0.25	1	3	1	3	n	0.11	1	8	1	8	n	ENSMUSG00000063550.9	Nup98	chr7	protein_coding	nucleoporin 98
known_NIR_16340	chr7	101859798	101870090	+	101859798	101871989	A3SS	ENSMUST00000147536.8	known	0.18	2	9	2	9	y	0.08	2	24	2	24	y	0.05	1	19	1	19	n	0.12	2	14	2	14	y	0.09	4	39	4	39	y	0.00	0	14	0	14	n	0.10	2	19	2	19	y	0.31	4	9	4	9	y	0.00	0	11	0	11	n	0.09	2	21	2	21	y	0.14	1	6	1	6	n	0.05	1	20	1	20	n	ENSMUSG00000030990.19	Pgap2	chr7	protein_coding	post-GPI attachment to proteins 2
known_NIR_16341	chr7	101859798	101870090	+	101859798	101872586	A3SS	ENSMUST00000120879.8	known	0.13	2	13	2	13	y	0.15	2	11	2	11	y	0.07	1	14	1	14	n	0.29	2	5	2	5	n	0.17	4	19	4	19	y	0.00	0	9	0	9	n	0.13	2	13	2	13	y	0.31	4	9	4	9	y	0.00	0	7	0	7	n	0.15	2	11	2	11	y	0.20	1	4	1	4	n	0.25	1	3	1	3	n	ENSMUSG00000030990.19	Pgap2	chr7	protein_coding	post-GPI attachment to proteins 2
known_NIR_16342	chr7	101859798	101872586	+	101859798;101872008	101871989;101872586	ES	ENSMUST00000147536.8	known	0.52	13	12.0	13	9;15	y	0.29	11	26.5	11	24;29	y	0.42	14	19.0	14	19;19	y	0.26	5	14.5	5	14;15	y	0.32	19	40.5	19	39;42	y	0.37	9	15.5	9	14;17	y	0.39	13	20.0	13	19;21	y	0.46	9	10.5	9	9;12	y	0.38	7	11.5	7	11;12	y	0.34	11	21.0	11	21;21	y	0.38	4	6.5	4	6;7	y	0.13	3	20.5	3	20;21	y	ENSMUSG00000030990.19	Pgap2	chr7	protein_coding	post-GPI attachment to proteins 2
known_NIR_16343	chr7	101859798	101872586	+	101872357	101872586	5pMXE	ENSMUST00000156529.8	known	0.46	13	15	13	15	y	0.50	11	11	11	11	y	0.67	14	7	14	7	y	0.17	5	24	5	24	y	0.44	19	24	19	24	y	0.43	9	12	9	12	y	0.31	13	29	13	29	y	0.56	9	7	9	7	y	0.26	7	20	7	20	y	0.29	11	27	11	27	y	0.19	4	17	4	17	y	0.08	3	35	3	35	y	ENSMUSG00000030990.19	Pgap2	chr7	protein_coding	post-GPI attachment to proteins 2
known_NIR_16344	chr7	101859798	101875478	+	101872697	101875478	5pMXE	ENSMUST00000138753.8	known	0.04	2	55	2	55	y	0.00	0	26	0	26	n	0.06	3	44	3	44	y	0.03	1	39	1	39	n	0.00	0	84	0	84	n	0.04	2	43	2	43	y	0.02	1	45	1	45	n	0.00	0	38	0	38	n	0.00	0	51	0	51	n	0.00	0	66	0	66	n	0.00	0	34	0	34	n	0.00	0	56	0	56	n	ENSMUSG00000030990.19	Pgap2	chr7	protein_coding	post-GPI attachment to proteins 2
known_NIR_16345	chr7	101859798;101872357	101871989;101872586	+	101859798	101872586	cassetteExon	ENSMUST00000120879.8	known	0.48	12.0	13	9;15	13	y	0.61	17.5	11	24;11	11	y	0.48	13.0	14	19;7	14	y	0.79	19.0	5	14;24	5	y	0.62	31.5	19	39;24	19	y	0.59	13.0	9	14;12	9	y	0.65	24.0	13	19;29	13	y	0.47	8.0	9	9;7	9	y	0.69	15.5	7	11;20	7	y	0.69	24.0	11	21;27	11	y	0.74	11.5	4	6;17	4	y	0.90	27.5	3	20;35	3	y	ENSMUSG00000030990.19	Pgap2	chr7	protein_coding	post-GPI attachment to proteins 2
known_NIR_16346	chr7	101859798;101872357	101871989;101875478	+	101859798;101872697	101872586;101875478	MXE	ENSMUST00000120879.8	known	0.12	4.5	34.0	9;0	13;55	n	0.39	12.0	18.5	24;0	11;26	n	0.26	10.0	29.0	19;1	14;44	n	0.27	8.0	22.0	14;2	5;39	y	0.27	19.5	51.5	39;0	19;84	n	0.21	7.0	26.0	14;0	9;43	n	0.28	11.0	29.0	19;3	13;45	y	0.18	5.0	23.5	9;1	9;38	n	0.16	5.5	29.0	11;0	7;51	n	0.25	13.0	38.5	21;5	11;66	y	0.24	6.0	19.0	6;6	4;34	y	0.28	11.5	29.5	20;3	3;56	y	ENSMUSG00000030990.19	Pgap2	chr7	protein_coding	post-GPI attachment to proteins 2
known_NIR_16347	chr7	101859798;101872697	101872586;101875478	+	101859798	101875478	cassetteExon	ENSMUST00000140631.2	known	0.94	34.0	2	13;55	2	y	1.00	18.5	0	11;26	0	n	0.91	29.0	3	14;44	3	y	0.96	22.0	1	5;39	1	n	1.00	51.5	0	19;84	0	n	0.93	26.0	2	9;43	2	y	0.97	29.0	1	13;45	1	n	1.00	23.5	0	9;38	0	n	1.00	29.0	0	7;51	0	n	1.00	38.5	0	11;66	0	n	1.00	19.0	0	4;34	0	n	1.00	29.5	0	3;56	0	n	ENSMUSG00000030990.19	Pgap2	chr7	protein_coding	post-GPI attachment to proteins 2
known_NIR_16348	chr7	101872357	101872586	+	101872008	101872586	A5SS	ENSMUST00000147536.8	known	0.50	15	15	15	15	y	0.28	11	29	11	29	y	0.27	7	19	7	19	y	0.62	24	15	24	15	y	0.36	24	42	24	42	y	0.41	12	17	12	17	y	0.58	29	21	29	21	y	0.37	7	12	7	12	y	0.62	20	12	20	12	y	0.56	27	21	27	21	y	0.71	17	7	17	7	y	0.62	35	21	35	21	y	ENSMUSG00000030990.19	Pgap2	chr7	protein_coding	post-GPI attachment to proteins 2
known_NIR_16349	chr7	101872357	101875478	+	101872357;101872697	101872586;101875478	ES	ENSMUST00000156529.8	known	0.00	0	35.0	0	15;55	n	0.00	0	18.5	0	11;26	n	0.04	1	25.5	1	7;44	n	0.06	2	31.5	2	24;39	y	0.00	0	54.0	0	24;84	n	0.00	0	27.5	0	12;43	n	0.07	3	37.0	3	29;45	y	0.04	1	22.5	1	7;38	n	0.00	0	35.5	0	20;51	n	0.10	5	46.5	5	27;66	y	0.19	6	25.5	6	17;34	y	0.06	3	45.5	3	35;56	y	ENSMUSG00000030990.19	Pgap2	chr7	protein_coding	post-GPI attachment to proteins 2
known_NIR_16350	chr7	101872357	101875478	+	101872697	101875478	A5SS&ES	ENSMUST00000146996.8	known	0.00	0	55	0	55	n	0.00	0	26	0	26	n	0.02	1	44	1	44	n	0.05	2	39	2	39	y	0.00	0	84	0	84	n	0.00	0	43	0	43	n	0.06	3	45	3	45	y	0.03	1	38	1	38	n	0.00	0	51	0	51	n	0.07	5	66	5	66	y	0.15	6	34	6	34	y	0.05	3	56	3	56	y	ENSMUSG00000030990.19	Pgap2	chr7	protein_coding	post-GPI attachment to proteins 2
known_NIR_16351	chr7	101872504	101872586	+	101859798	101872586	A5SS	ENSMUST00000120879.8	known	0.28	5	13	5	13	y	0.08	1	11	1	11	n	0.18	3	14	3	14	y	0.69	11	5	11	5	y	0.10	2	19	2	19	y	0.00	0	9	0	9	n	0.38	8	13	8	13	y	0.25	3	9	3	9	y	0.30	3	7	3	7	y	0.45	9	11	9	11	y	0.50	4	4	4	4	n	0.73	8	3	8	3	y	ENSMUSG00000030990.19	Pgap2	chr7	protein_coding	post-GPI attachment to proteins 2
known_NIR_16352	chr7	101872504	101872586	+	101872008	101872586	A5SS	ENSMUST00000147536.8	known	0.25	5	15	5	15	y	0.03	1	29	1	29	n	0.14	3	19	3	19	y	0.42	11	15	11	15	y	0.05	2	42	2	42	y	0.00	0	17	0	17	n	0.28	8	21	8	21	y	0.20	3	12	3	12	y	0.20	3	12	3	12	y	0.30	9	21	9	21	y	0.36	4	7	4	7	y	0.28	8	21	8	21	y	ENSMUSG00000030990.19	Pgap2	chr7	protein_coding	post-GPI attachment to proteins 2
known_NIR_16353	chr7	101872504	101872586	+	101872357	101872586	A5SS	ENSMUST00000156529.8	known	0.25	5	15	5	15	y	0.08	1	11	1	11	n	0.30	3	7	3	7	y	0.31	11	24	11	24	y	0.08	2	24	2	24	y	0.00	0	12	0	12	n	0.22	8	29	8	29	y	0.30	3	7	3	7	y	0.13	3	20	3	20	y	0.25	9	27	9	27	y	0.19	4	17	4	17	y	0.19	8	35	8	35	y	ENSMUSG00000030990.19	Pgap2	chr7	protein_coding	post-GPI attachment to proteins 2
known_NIR_16354	chr7	101872504	101872611	+	101872504	101872586	A3SS	ENSMUST00000126914.8	known	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.50	3	3	3	3	n	0.21	3	11	3	11	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	ENSMUSG00000030990.19	Pgap2	chr7	protein_coding	post-GPI attachment to proteins 2
known_NIR_16355	chr7	101872697	101885655	+	101872697	101875478	3pMXE	ENSMUST00000146996.8	known	0.00	0	55	0	55	n	0.00	0	26	0	26	n	0.00	0	44	0	44	n	0.00	0	39	0	39	n	0.00	0	84	0	84	n	0.00	0	43	0	43	n	0.00	0	45	0	45	n	0.05	2	38	2	38	y	0.00	0	51	0	51	n	0.00	0	66	0	66	n	0.00	0	34	0	34	n	0.02	1	56	1	56	n	ENSMUSG00000030990.19	Pgap2	chr7	protein_coding	post-GPI attachment to proteins 2
known_NIR_16356	chr7	101875652	101885301	+	101885079	101885301	5pMXE	ENSMUST00000214560.2	known	0.92	45	4	45	4	y	1.00	37	0	37	0	n	0.94	45	3	45	3	y	0.95	40	2	40	2	y	0.98	62	1	62	1	n	1.00	25	0	25	0	n	0.96	50	2	50	2	y	0.91	31	3	31	3	y	0.93	39	3	39	3	y	0.94	47	3	47	3	y	1.00	36	0	36	0	n	1.00	55	0	55	0	n	ENSMUSG00000111339.2	00R_Pgap2	chr7	lncRNA	--
known_NIR_16357	chr7	101875652;101884966	101884869;101885301	+	101875652	101885301	cassetteExon	ENSMUST00000120879.8	known	0.06	3.0	45	6;0	45	n	0.03	1.0	37	1;1	37	n	0.00	0.0	45	0;0	45	n	0.06	2.5	40	3;2	40	y	0.05	3.5	62	4;3	62	y	0.04	1.0	25	2;0	25	n	0.07	3.5	50	6;1	50	n	0.09	3.0	31	3;3	31	y	0.03	1.0	39	1;1	39	n	0.05	2.5	47	3;2	47	y	0.01	0.5	36	1;0	36	n	0.05	3.0	55	2;4	55	y	ENSMUSG00000030990.19	Pgap2	chr7	protein_coding	post-GPI attachment to proteins 2
known_NIR_16358	chr7	101875652;101885079	101884869;101885301	+	101875652	101885301	cassetteExon	ENSMUST00000120879.8	known	0.10	5.0	45	6;4	45	y	0.01	0.5	37	1;0	37	n	0.03	1.5	45	0;3	45	n	0.06	2.5	40	3;2	40	y	0.04	2.5	62	4;1	62	n	0.04	1.0	25	2;0	25	n	0.07	4.0	50	6;2	50	y	0.09	3.0	31	3;3	31	y	0.05	2.0	39	1;3	39	n	0.06	3.0	47	3;3	47	y	0.01	0.5	36	1;0	36	n	0.02	1.0	55	2;0	55	n	ENSMUSG00000030990.19	Pgap2	chr7	protein_coding	post-GPI attachment to proteins 2
known_NIR_16359	chr7	101880632	101885301	+	101875652	101885301	A5SS	ENSMUST00000120879.8	known	0.00	0	45	0	45	n	0.03	1	37	1	37	n	0.00	0	45	0	45	n	0.00	0	40	0	40	n	0.09	6	62	6	62	y	0.11	3	25	3	25	y	0.04	2	50	2	50	y	0.06	2	31	2	31	y	0.00	0	39	0	39	n	0.00	0	47	0	47	n	0.05	2	36	2	36	y	0.05	3	55	3	55	y	ENSMUSG00000030990.19	Pgap2	chr7	protein_coding	post-GPI attachment to proteins 2
known_NIR_16360	chr7	101885553	101885655	+	101872697	101885655	A5SS	ENSMUST00000133311.8	known	1.00	70	0	70	0	n	1.00	48	0	48	0	n	1.00	62	0	62	0	n	1.00	64	0	64	0	n	1.00	99	0	99	0	n	1.00	57	0	57	0	n	1.00	66	0	66	0	n	0.96	47	2	47	2	y	1.00	55	0	55	0	n	1.00	100	0	100	0	n	1.00	65	0	65	0	n	0.98	53	1	53	1	n	ENSMUSG00000030990.19	Pgap2	chr7	protein_coding	post-GPI attachment to proteins 2
known_NIR_16361	chr7	101885761	101886329	+	101885749	101886329	A5SS	ENSMUST00000120879.8	known	0.46	40	47	40	47	y	0.49	32	33	32	33	y	0.47	33	37	33	37	y	0.55	41	34	41	34	y	0.50	60	59	60	59	y	0.52	31	29	31	29	y	0.54	46	39	46	39	y	0.63	31	18	31	18	y	0.58	44	32	44	32	y	0.55	48	40	48	40	y	0.56	41	32	41	32	y	0.56	39	31	39	31	y	ENSMUSG00000030990.19	Pgap2	chr7	protein_coding	post-GPI attachment to proteins 2
known_NIR_16362	chr7	102076524;102078073	102077981;102080092	+	102076524	102080092	cassetteExon	ENSMUST00000033289.6	known	0.00	0.0	29	0;0	29	n	0.05	1.5	26	3;0	26	n	0.15	7.0	39	6;8	39	y	0.02	0.5	31	1;0	31	n	0.01	0.5	57	1;0	57	n	0.38	10.0	16	10;10	16	y	0.09	5.5	53	6;5	53	y	0.18	6.5	30	6;7	30	y	0.02	0.5	31	1;0	31	n	0.06	3.0	44	2;4	44	y	0.00	0.0	22	0;0	22	n	0.02	1.0	43	0;2	43	n	ENSMUSG00000030987.6	Stim1	chr7	protein_coding	stromal interaction molecule 1
known_NIR_16363	chr7	102080482	102084591	+	102080158	102084591	A5SS	ENSMUST00000033289.6	known	0.00	0	41	0	41	n	0.00	0	23	0	23	n	0.00	0	45	0	45	n	0.00	0	36	0	36	n	0.00	0	80	0	80	n	0.00	0	30	0	30	n	0.04	2	54	2	54	y	0.00	0	47	0	47	n	0.00	0	37	0	37	n	0.00	0	49	0	49	n	0.00	0	26	0	26	n	0.00	0	45	0	45	n	ENSMUSG00000030987.6	Stim1	chr7	protein_coding	stromal interaction molecule 1
known_NIR_16364	chr7	102213332	102214596	-	102213332;102213547	102213479;102214596	ES	ENSMUST00000033264.12	known	0.00	0	7.5	0	10;5	n	0.00	0	8.0	0	12;4	n	0.17	1	5.0	1	5;5	n	0.00	0	9.0	0	12;6	n	0.21	3	11.0	3	15;7	y	0.18	1	4.5	1	5;4	n	0.00	0	3.0	0	6;0	n	0.07	1	12.5	1	17;8	n	0.00	0	6.5	0	5;8	n	0.00	0	13.5	0	20;7	n	0.00	0	7.0	0	10;4	n	0.00	0	6.0	0	9;3	n	ENSMUSG00000030966.14	Trim21	chr7	protein_coding	tripartite motif-containing 21
known_NIR_16365	chr7	103893813	103896738	+	103893799	103896738	A5SS	ENSMUST00000106849.9	known	1.00	2	0	2	0	n	0.00	0	1	0	1	n	0.43	3	4	3	4	n	0.29	4	10	4	10	y	0.55	6	5	6	5	y	0.50	1	1	1	1	n	0.67	4	2	4	2	n	0.60	3	2	3	2	n	0.75	3	1	3	1	n	0.80	4	1	4	1	n	0.67	2	1	2	1	n	0.00	0	4	0	4	n	ENSMUSG00000056144.15	Trim34a	chr7	protein_coding	tripartite motif-containing 34A
known_NIR_16366	chr7	103950069	103950301	-	103950069	103950199	5pMXE	ENSMUST00000142641.2	known	1.00	21	0	21	0	n	0.87	20	3	20	3	y	0.95	19	1	19	1	n	1.00	20	0	20	0	n	0.95	18	1	18	1	n	1.00	8	0	8	0	n	0.88	21	3	21	3	y	1.00	9	0	9	0	n	0.95	20	1	20	1	n	0.91	30	3	30	3	y	0.89	25	3	25	3	y	0.86	19	3	19	3	y	ENSMUSG00000066258.14	Trim12a	chr7	protein_coding	tripartite motif-containing 12A
known_NIR_16367	chr7	103953593;103955301	103955206;103956119	-	103953593	103956119	cassetteExon	ENSMUST00000106837.8	known	1.00	19.5	0	21;18	0	n	1.00	19.0	0	19;19	0	n	0.91	19.5	2	22;17	2	y	0.94	16.0	1	12;20	1	n	1.00	22.0	0	26;18	0	n	0.70	7.0	3	6;8	3	y	0.97	29.0	1	26;32	1	n	1.00	7.0	0	5;9	0	n	1.00	17.5	0	21;14	0	n	0.90	35.0	4	41;29	4	y	0.86	18.5	3	24;13	3	y	1.00	20.5	0	23;18	0	n	ENSMUSG00000066258.14	Trim12a	chr7	protein_coding	tripartite motif-containing 12A
known_NIR_16368	chr7	103956594	103964508	-	103956594	103964618	A5SS	ENSMUST00000106837.8	known	0.33	1	2	1	2	n	0.60	3	2	3	2	n	0.38	3	5	3	5	n	0.50	1	1	1	1	n	0.56	5	4	5	4	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.60	3	2	3	2	n	1.00	5	0	5	0	n	0.80	8	2	8	2	y	1.00	2	0	2	0	n	0.00	0	1	0	1	n	ENSMUSG00000066258.14	Trim12a	chr7	protein_coding	tripartite motif-containing 12A
known_NIR_16369	chr7	103997610	104002511	-	103997610	104002401	A5SS	ENSMUST00000059037.15	known	0.06	1	16	1	16	n	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.17	2	10	2	10	y	0.00	0	18	0	18	n	0.00	0	3	0	3	n	0.10	1	9	1	9	n	0.00	0	9	0	9	n	0.10	1	9	1	9	n	0.00	0	19	0	19	n	0.00	0	12	0	12	n	0.00	0	22	0	22	n	ENSMUSG00000057143.16	Trim12c	chr7	protein_coding	tripartite motif-containing 12C
known_NIR_16370	chr7	104133480;104137258	104136783;104156878	-	104133480	104156878	cassetteExon	ENSMUST00000071069.13	known	0.67	4.0	2	5;3	2	y	0.73	5.5	2	8;3	2	y	0.52	6.5	6	7;6	6	y	0.66	9.5	5	7;12	5	y	1.00	10.5	0	8;13	0	n	0.50	2.0	2	1;3	2	n	0.45	2.5	3	2;3	3	n	0.71	5.0	2	7;3	2	y	0.76	9.5	3	9;10	3	y	0.87	6.5	1	6;7	1	n	1.00	2.0	0	1;3	0	n	0.71	7.5	3	9;6	3	y	ENSMUSG00000057596.14	Trim30d	chr7	protein_coding	tripartite motif-containing 30D
known_NIR_16371	chr7	105030449	105030583	-	105030449	105030606	A5SS	ENSMUST00000179474.9	known	0.05	2	38	2	38	y	0.13	4	27	4	27	y	0.17	7	35	7	35	y	0.19	5	22	5	22	y	0.08	3	36	3	36	y	0.26	8	23	8	23	y	0.09	3	29	3	29	y	0.17	2	10	2	10	y	0.06	1	15	1	15	n	0.16	6	32	6	32	y	0.03	1	29	1	29	n	0.00	0	29	0	29	n	ENSMUSG00000044465.20	Fam160a2	chr7	protein_coding	family with sequence similarity 160, member A2
known_NIR_16372	chr7	105030784	105033582	-	105030784	105032988	A5SS	ENSMUST00000179474.9	known	0.00	0	17	0	17	n	0.05	1	21	1	21	n	0.00	0	36	0	36	n	0.07	2	26	2	26	y	0.00	0	52	0	52	n	0.00	0	24	0	24	n	0.00	0	28	0	28	n	0.00	0	26	0	26	n	0.00	0	22	0	22	n	0.02	1	40	1	40	n	0.00	0	25	0	25	n	0.00	0	35	0	35	n	ENSMUSG00000044465.20	Fam160a2	chr7	protein_coding	family with sequence similarity 160, member A2
known_NIR_16373	chr7	105033779	105034153	-	105033779	105034195	A5SS	ENSMUST00000179474.9	known	0.53	9	8	9	8	y	0.36	4	7	4	7	y	0.52	15	14	15	14	y	0.50	7	7	7	7	y	0.57	16	12	16	12	y	0.67	14	7	14	7	y	0.42	11	15	11	15	y	0.70	7	3	7	3	y	0.59	10	7	10	7	y	0.48	14	15	14	15	y	0.47	14	16	14	16	y	0.44	11	14	11	14	y	ENSMUSG00000044465.20	Fam160a2	chr7	protein_coding	family with sequence similarity 160, member A2
known_NIR_16374	chr7	105039559;105040874	105040784;105049091	-	105039559	105049091	cassetteExon	ENSMUST00000179474.9	known	0.04	0.5	11	1;0	11	n	0.14	1.0	6	0;2	6	n	0.18	2.0	9	4;0	9	n	0.00	0.0	16	0;0	16	n	0.07	1.5	20	3;0	20	n	0.00	0.0	6	0;0	6	n	0.10	1.5	13	2;1	13	n	0.09	1.0	10	2;0	10	n	0.30	3.0	7	4;2	7	y	0.30	3.5	8	4;3	8	y	0.47	3.5	4	4;3	4	y	0.14	3.0	18	6;0	18	n	ENSMUSG00000044465.20	Fam160a2	chr7	protein_coding	family with sequence similarity 160, member A2
known_NIR_16375	chr7	105245557	105248869	-	105248585	105248869	A3SS&ES	ENSMUST00000033185.10	known	0.01	626	59004	626	59004	y	0.01	855	61824	855	61824	y	0.01	2522	205963	2522	205963	y	0.01	763	62773	763	62773	y	0.01	1865	154382	1865	154382	y	0.01	1408	120110	1408	120110	y	0.01	1277	94197	1277	94197	y	0.01	1678	123006	1678	123006	y	0.01	579	38251	579	38251	y	0.02	824	50154	824	50154	y	0.01	507	36017	507	36017	y	0.01	718	54945	718	54945	y	ENSMUSG00000030895.10	Hpx	chr7	protein_coding	hemopexin
known_NIR_16376	chr7	105268417	105268595	-	105268417	105268590	A5SS	ENSMUST00000106791.8	known	0.00	0	4	0	4	n	0.50	4	4	4	4	n	0.24	15	48	15	48	y	0.18	4	18	4	18	y	0.43	10	13	10	13	y	0.15	5	28	5	28	y	0.19	3	13	3	13	y	0.27	6	16	6	16	y	0.36	5	9	5	9	y	0.42	5	7	5	7	y	0.27	4	11	4	11	y	0.38	6	10	6	10	y	ENSMUSG00000036989.17	Trim3	chr7	protein_coding	tripartite motif-containing 3
known_NIR_16377	chr7	105268435	105268590	-	105268417	105268590	A3SS	ENSMUST00000106791.8	known	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.02	1	48	1	48	n	0.05	1	18	1	18	n	0.13	2	13	2	13	y	0.07	2	28	2	28	y	0.19	3	13	3	13	y	0.06	1	16	1	16	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	ENSMUSG00000036989.17	Trim3	chr7	protein_coding	tripartite motif-containing 3
known_NIR_16378	chr7	105274778	105282399	-	105274778	105282584	A5SS	ENSMUST00000106791.8	known	0.12	1	7	1	7	n	0.00	0	6	0	6	n	0.06	2	29	2	29	y	0.00	0	7	0	7	n	0.04	1	23	1	23	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.06	1	16	1	16	n	0.00	0	13	0	13	n	0.11	1	8	1	8	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	ENSMUSG00000036989.17	Trim3	chr7	protein_coding	tripartite motif-containing 3
known_NIR_16379	chr7	105274778	105282399	-	105274778	105282610	A5SS	ENSMUST00000057525.14	known	0.50	1	1	1	1	n	-	-	-	-	-	-	0.07	2	26	2	26	y	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.00	0	16	0	16	n	-	-	-	-	-	-	0.12	1	7	1	7	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000036989.17	Trim3	chr7	protein_coding	tripartite motif-containing 3
known_NIR_16380	chr7	105274778	105282610	-	105274778	105282584	A5SS	ENSMUST00000106791.8	known	0.12	1	7	1	7	n	0.00	0	6	0	6	n	0.47	26	29	26	29	y	0.22	2	7	2	7	n	0.18	5	23	5	23	y	0.53	16	14	16	14	y	0.00	0	9	0	9	n	0.30	7	16	7	16	y	0.19	3	13	3	13	y	0.20	2	8	2	8	y	0.20	1	4	1	4	n	0.27	3	8	3	8	y	ENSMUSG00000036989.17	Trim3	chr7	protein_coding	tripartite motif-containing 3
known_NIR_16381	chr7	105286485	105286859	-	105286485	105287026	A5SS	ENSMUST00000131446.8	known	0.23	6	20	6	20	y	0.20	6	24	6	24	y	0.31	18	40	18	40	y	0.26	5	14	5	14	y	0.13	5	33	5	33	y	0.30	15	35	15	35	y	0.10	4	35	4	35	y	0.31	9	20	9	20	y	0.18	2	9	2	9	y	0.07	1	14	1	14	n	0.29	6	15	6	15	y	0.19	4	17	4	17	y	ENSMUSG00000030881.16	Arfip2	chr7	protein_coding	ADP-ribosylation factor interacting protein 2
known_NIR_16382	chr7	105286485	105287070	-	105286485	105286859	A5SS	ENSMUST00000127853.8	known	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.18	4	18	4	18	y	0.29	2	5	2	5	n	0.29	2	5	2	5	n	0.00	0	15	0	15	n	0.00	0	4	0	4	n	0.25	3	9	3	9	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	ENSMUSG00000030881.16	Arfip2	chr7	protein_coding	ADP-ribosylation factor interacting protein 2
known_NIR_16383	chr7	105286485	105287070	-	105286485	105287026	A5SS	ENSMUST00000131446.8	known	0.00	0	20	0	20	n	0.00	0	24	0	24	n	0.09	4	40	4	40	y	0.12	2	14	2	14	y	0.06	2	33	2	33	y	0.00	0	35	0	35	n	0.00	0	35	0	35	n	0.13	3	20	3	20	y	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	15	0	15	n	0.00	0	17	0	17	n	ENSMUSG00000030881.16	Arfip2	chr7	protein_coding	ADP-ribosylation factor interacting protein 2
known_NIR_16384	chr7	105286485	105287147	-	105286485	105286859	5pMXE	ENSMUST00000127853.8	known	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.10	2	18	2	18	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	15	0	15	n	0.33	2	4	2	4	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	ENSMUSG00000030881.16	Arfip2	chr7	protein_coding	ADP-ribosylation factor interacting protein 2
known_NIR_16385	chr7	105286485	105287147	-	105286485	105287026	A5SS	ENSMUST00000131446.8	known	0.00	0	20	0	20	n	0.00	0	24	0	24	n	0.05	2	40	2	40	y	0.00	0	14	0	14	n	0.00	0	33	0	33	n	0.00	0	35	0	35	n	0.05	2	35	2	35	y	0.00	0	20	0	20	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	15	0	15	n	0.00	0	17	0	17	n	ENSMUSG00000030881.16	Arfip2	chr7	protein_coding	ADP-ribosylation factor interacting protein 2
known_NIR_16386	chr7	105286485;105286932	105286859;105287070	-	105286485	105287070	cassetteExon	ENSMUST00000209870.2	known	1.00	3.0	0	6;0	0	n	1.00	4.0	0	6;2	0	n	0.69	9.0	4	18;0	4	n	0.67	4.0	2	5;3	2	y	0.56	2.5	2	5;0	2	n	1.00	7.5	0	15;0	0	n	1.00	2.0	0	4;0	0	n	0.68	6.5	3	9;4	3	y	1.00	1.0	0	2;0	0	n	1.00	0.5	0	1;0	0	n	1.00	3.0	0	6;0	0	n	1.00	2.5	0	4;1	0	n	ENSMUSG00000030881.16	Arfip2	chr7	protein_coding	ADP-ribosylation factor interacting protein 2
known_NIR_16387	chr7	105287551	105288216	-	105287534	105288216	A3SS	ENSMUST00000131446.8	known	0.00	0	35	0	35	n	0.00	0	30	0	30	n	0.00	0	107	0	107	n	0.00	0	42	0	42	n	0.06	3	48	3	48	y	0.00	0	75	0	75	n	0.00	0	45	0	45	n	0.00	0	37	0	37	n	0.00	0	19	0	19	n	0.00	0	28	0	28	n	0.00	0	25	0	25	n	0.00	0	33	0	33	n	ENSMUSG00000030881.16	Arfip2	chr7	protein_coding	ADP-ribosylation factor interacting protein 2
known_NIR_16388	chr7	105288396	105288532	-	105288312	105288532	A3SS	ENSMUST00000131446.8	known	0.00	0	37	0	37	n	0.00	0	30	0	30	n	0.06	5	80	5	80	y	0.00	0	26	0	26	n	0.00	0	37	0	37	n	0.02	1	54	1	54	n	0.00	0	40	0	40	n	0.00	0	33	0	33	n	0.00	0	19	0	19	n	0.00	0	26	0	26	n	0.00	0	31	0	31	n	0.00	0	29	0	29	n	ENSMUSG00000030881.16	Arfip2	chr7	protein_coding	ADP-ribosylation factor interacting protein 2
known_NIR_16389	chr7	105288632	105289452	-	105288672	105289452	A3SS	ENSMUST00000131446.8	known	0.00	0	35	0	35	n	0.07	3	40	3	40	y	0.03	3	108	3	108	y	0.00	0	32	0	32	n	0.06	3	48	3	48	y	0.00	0	46	0	46	n	0.09	4	40	4	40	y	0.00	0	52	0	52	n	0.00	0	21	0	21	n	0.12	2	14	2	14	y	0.00	0	27	0	27	n	0.03	1	31	1	31	n	ENSMUSG00000030881.16	Arfip2	chr7	protein_coding	ADP-ribosylation factor interacting protein 2
known_NIR_16390	chr7	105288672	105289347	-	105288672	105289452	A5SS	ENSMUST00000131446.8	known	0.00	0	35	0	35	n	0.00	0	40	0	40	n	0.02	2	108	2	108	y	0.00	0	32	0	32	n	0.00	0	48	0	48	n	0.02	1	46	1	46	n	0.00	0	40	0	40	n	0.00	0	52	0	52	n	0.00	0	21	0	21	n	0.00	0	14	0	14	n	0.00	0	27	0	27	n	0.00	0	31	0	31	n	ENSMUSG00000030881.16	Arfip2	chr7	protein_coding	ADP-ribosylation factor interacting protein 2
known_NIR_16391	chr7	105289829	105290235	+	105289829	105289969	A3SS	ENSMUST00000151193.2	known	0.01	1	162	1	162	n	0.02	3	147	3	147	y	0.01	4	402	4	402	y	0.01	1	148	1	148	n	0.01	2	238	2	238	y	0.00	0	286	0	286	n	0.00	0	240	0	240	n	0.00	0	143	0	143	n	0.00	0	123	0	123	n	0.01	3	209	3	209	y	0.01	1	146	1	146	n	0.02	3	174	3	174	y	ENSMUSG00000089847.9	Timm10b	chr7	protein_coding	translocase of inner mitochondrial membrane 10B
known_NIR_16392	chr7	105289829	105290235	+	105289829;105290064	105289969;105290235	ES	ENSMUST00000106783.8	known	0.01	1	190.0	1	162;218	n	0.02	3	189.0	3	147;231	y	0.01	4	474.5	4	402;547	y	0.01	1	160.0	1	148;172	n	0.01	2	271.5	2	238;305	y	0.00	0	325.0	0	286;364	n	0.00	0	268.0	0	240;296	n	0.00	0	176.5	0	143;210	n	0.00	0	145.5	0	123;168	n	0.01	3	242.5	3	209;276	y	0.01	1	183.5	1	146;221	n	0.02	3	194.5	3	174;215	y	ENSMUSG00000089847.9	Timm10b	chr7	protein_coding	translocase of inner mitochondrial membrane 10B
known_NIR_16393	chr7	105289829	105290235	+	105290064	105290235	A5SS&ES	ENSMUST00000150479.2	known	0.00	1	218	1	218	n	0.01	3	231	3	231	y	0.01	4	547	4	547	y	0.01	1	172	1	172	n	0.01	2	305	2	305	y	0.00	0	364	0	364	n	0.00	0	296	0	296	n	0.00	0	210	0	210	n	0.00	0	168	0	168	n	0.01	3	276	3	276	y	0.00	1	221	1	221	n	0.01	3	215	3	215	y	ENSMUSG00000089847.9	Timm10b	chr7	protein_coding	translocase of inner mitochondrial membrane 10B
known_NIR_16394	chr7	105290367	105290829	+	105290435	105290829	A5SS	ENSMUST00000058333.10	known	0.43	35	46	35	46	y	0.38	36	59	36	59	y	0.34	52	102	52	102	y	0.35	25	47	25	47	y	0.39	37	59	37	59	y	0.40	39	58	39	58	y	0.46	50	59	50	59	y	0.27	22	60	22	60	y	0.36	20	35	20	35	y	0.53	42	38	42	38	y	0.45	37	45	37	45	y	0.50	32	32	32	32	y	ENSMUSG00000089847.9	Timm10b	chr7	protein_coding	translocase of inner mitochondrial membrane 10B
known_NIR_16395	chr7	105290367	105292518	+	105290367	105290829	3pMXE	ENSMUST00000210350.2	known	0.00	0	35	0	35	n	0.00	0	36	0	36	n	0.00	0	52	0	52	n	0.00	0	25	0	25	n	0.05	2	37	2	37	y	0.00	0	39	0	39	n	0.04	2	50	2	50	y	0.00	0	22	0	22	n	0.00	0	20	0	20	n	0.00	0	42	0	42	n	0.03	1	37	1	37	n	0.09	3	32	3	32	y	ENSMUSG00000089847.9	Timm10b	chr7	protein_coding	translocase of inner mitochondrial membrane 10B
known_NIR_16396	chr7	105290367	105300279	+	105290367	105290829	3pMXE	ENSMUST00000210350.2	known	0.05	2	35	2	35	y	0.00	0	36	0	36	n	0.00	0	52	0	52	n	0.04	1	25	1	25	n	0.05	2	37	2	37	y	0.03	1	39	1	39	n	0.09	5	50	5	50	y	0.08	2	22	2	22	y	0.00	0	20	0	20	n	0.05	2	42	2	42	y	0.03	1	37	1	37	n	0.03	1	32	1	32	n	ENSMUSG00000089847.9	Timm10b	chr7	protein_coding	translocase of inner mitochondrial membrane 10B
known_NIR_16397	chr7	105290435	105292518	+	105290435	105290829	3pMXE	ENSMUST00000058333.10	known	0.02	1	46	1	46	n	0.00	0	59	0	59	n	0.00	0	102	0	102	n	0.00	0	47	0	47	n	0.00	0	59	0	59	n	0.03	2	58	2	58	y	0.00	0	59	0	59	n	0.00	0	60	0	60	n	0.00	0	35	0	35	n	0.05	2	38	2	38	y	0.00	0	45	0	45	n	0.03	1	32	1	32	n	ENSMUSG00000089847.9	Timm10b	chr7	protein_coding	translocase of inner mitochondrial membrane 10B
known_NIR_16398	chr7	105290435	105300279	+	105290435	105290829	3pMXE	ENSMUST00000058333.10	known	0.00	0	46	0	46	n	0.02	1	59	1	59	n	0.01	1	102	1	102	n	0.02	1	47	1	47	n	0.00	0	59	0	59	n	0.00	0	58	0	58	n	0.03	2	59	2	59	y	0.02	1	60	1	60	n	0.00	0	35	0	35	n	0.00	0	38	0	38	n	0.00	0	45	0	45	n	0.00	0	32	0	32	n	ENSMUSG00000089847.9	Timm10b	chr7	protein_coding	translocase of inner mitochondrial membrane 10B
known_NIR_16399	chr7	105306491	105317653	+	105306491	105308118	3pMXE	ENSMUST00000142363.8	known	1.00	4	0	4	0	n	0.20	1	4	1	4	n	0.59	10	7	10	7	y	0.00	0	1	0	1	n	0.60	3	2	3	2	n	0.67	6	3	6	3	n	1.00	3	0	3	0	n	0.50	3	3	3	3	n	0.60	3	2	3	2	n	0.25	3	9	3	9	y	0.40	2	3	2	3	n	0.38	5	8	5	8	y	ENSMUSG00000110234.3	Gm45799	chr7	protein_coding	predicted gene 45799
known_NIR_16400	chr7	105384263	105386272	-	105384263	105385505	5pMXE	ENSMUST00000033179.14	known	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.20	4	16	4	16	y	0.00	0	9	0	9	n	0.15	4	23	4	23	y	0.00	0	6	0	6	n	0.28	5	13	5	13	y	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.06	1	16	1	16	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	ENSMUSG00000030888.15	Rrp8	chr7	protein_coding	ribosomal RNA processing 8
known_NIR_16401	chr7	105386013	105386308	+	105385923	105386308	A5SS	ENSMUST00000033182.10	known	0.09	3	31	3	31	y	0.04	2	43	2	43	y	0.17	14	69	14	69	y	0.01	1	71	1	71	n	0.01	1	104	1	104	n	0.05	2	39	2	39	y	0.07	6	84	6	84	y	0.00	0	39	0	39	n	0.07	4	54	4	54	y	0.06	7	102	7	102	y	0.03	2	59	2	59	y	0.07	5	65	5	65	y	ENSMUSG00000030890.17	Ilk	chr7	protein_coding	integrin linked kinase
known_NIR_16402	chr7	105390746	105390994	+	105390914	105390994	A5SS&ES	ENSMUST00000033182.10	known	0.00	0	108	0	108	n	0.00	0	132	0	132	n	0.00	0	175	0	175	n	0.00	0	129	0	129	n	0.00	0	152	0	152	n	0.00	0	77	0	77	n	0.00	0	149	0	149	n	0.00	0	68	0	68	n	0.02	2	121	2	121	y	0.01	1	174	1	174	n	0.00	0	157	0	157	n	0.00	0	150	0	150	n	ENSMUSG00000030890.17	Ilk	chr7	protein_coding	integrin linked kinase
known_NIR_16403	chr7	105399537	105401189	-	105399537	105400797	A5SS&ES	ENSMUST00000211659.2	known	0.00	0	111	0	111	n	0.00	0	76	0	76	n	0.01	2	157	2	157	y	0.00	0	170	0	170	n	0.00	0	201	0	201	n	0.04	3	77	3	77	y	0.00	0	165	0	165	n	0.00	0	93	0	93	n	0.00	0	96	0	96	n	0.01	1	197	1	197	n	0.00	0	83	0	83	n	0.00	0	167	0	167	n	ENSMUSG00000030894.6	Tpp1	chr7	protein_coding	tripeptidyl peptidase I
known_NIR_16404	chr7	105399537	105401189	-	105399537;105400936	105400797;105401189	ES	ENSMUST00000033184.6	known	0.00	0	98.0	0	111;85	n	0.00	0	75.5	0	76;75	n	0.01	2	155.0	2	157;153	y	0.00	0	155.5	0	170;141	n	0.00	0	192.5	0	201;184	n	0.03	3	87.5	3	77;98	y	0.00	0	158.0	0	165;151	n	0.00	0	112.5	0	93;132	n	0.00	0	93.5	0	96;91	n	0.01	1	175.0	1	197;153	n	0.00	0	85.0	0	83;87	n	0.00	0	168.5	0	167;170	n	ENSMUSG00000030894.6	Tpp1	chr7	protein_coding	tripeptidyl peptidase I
known_NIR_16405	chr7	105399537	105401189	-	105400936	105401189	A3SS	ENSMUST00000210840.2	known	0.00	0	85	0	85	n	0.00	0	75	0	75	n	0.01	2	153	2	153	y	0.00	0	141	0	141	n	0.00	0	184	0	184	n	0.03	3	98	3	98	y	0.00	0	151	0	151	n	0.00	0	132	0	132	n	0.00	0	91	0	91	n	0.01	1	153	1	153	n	0.00	0	87	0	87	n	0.00	0	170	0	170	n	ENSMUSG00000030894.6	Tpp1	chr7	protein_coding	tripeptidyl peptidase I
known_NIR_16406	chr7	105459351	105459496	-	105459351	105459657	A5SS	ENSMUST00000124482.3	known	0.00	0	407	0	407	n	0.00	0	486	0	486	n	0.00	0	738	0	738	n	0.00	0	429	0	429	n	0.00	1	558	1	558	n	0.00	1	378	1	378	n	0.00	0	592	0	592	n	0.00	0	336	0	336	n	0.00	0	323	0	323	n	0.00	0	515	0	515	n	0.00	2	498	2	498	y	0.00	0	383	0	383	n	ENSMUSG00000030879.11	Mrpl17	chr7	protein_coding	mitochondrial ribosomal protein L17
known_NIR_16407	chr7	105459351	105459591	-	105459351	105459657	A5SS	ENSMUST00000124482.3	known	0.01	5	407	5	407	y	0.00	1	486	1	486	n	0.00	1	738	1	738	n	0.00	0	429	0	429	n	0.00	1	558	1	558	n	0.00	0	378	0	378	n	0.00	0	592	0	592	n	0.00	0	336	0	336	n	0.00	0	323	0	323	n	0.00	0	515	0	515	n	0.00	1	498	1	498	n	0.00	0	383	0	383	n	ENSMUSG00000030879.11	Mrpl17	chr7	protein_coding	mitochondrial ribosomal protein L17
known_NIR_16408	chr7	105459725	105460197	-	105459725	105460015	A5SS	ENSMUST00000124482.3	known	0.00	0	368	0	368	n	0.00	0	363	0	363	n	0.00	0	595	0	595	n	0.01	3	374	3	374	y	0.00	0	489	0	489	n	0.01	2	336	2	336	y	0.00	0	444	0	444	n	0.00	0	302	0	302	n	0.00	0	239	0	239	n	0.00	0	441	0	441	n	0.00	0	375	0	375	n	0.00	1	338	1	338	n	ENSMUSG00000030879.11	Mrpl17	chr7	protein_coding	mitochondrial ribosomal protein L17
known_NIR_16409	chr7	105553054;105563754	105563701;105603062	-	105553054	105603062	cassetteExon	ENSMUST00000106766.9	known	1.00	1.5	0	3;0	0	n	0.00	0.0	2	0;0	2	n	0.64	3.5	2	5;2	2	n	0.56	5.0	4	7;3	4	y	0.41	3.5	5	4;3	5	y	0.00	0.0	4	0;0	4	n	-	-	-	-	-	-	0.00	0.0	2	0;0	2	n	0.33	1.0	2	2;0	2	n	0.33	1.5	3	3;0	3	n	0.50	2.0	2	3;1	2	n	0.23	3.0	10	5;1	10	n	ENSMUSG00000078606.9	Gvin2	chr7	protein_coding	GTPase, very large interferon inducible, family member 2
known_NIR_16410	chr7	105576497	105603062	-	105553054	105603062	A3SS	ENSMUST00000106766.9	known	-	-	-	-	-	-	0.50	2	2	2	2	n	0.00	0	2	0	2	n	0.33	2	4	2	4	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.50	2	2	2	2	n	0.60	3	2	3	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.29	4	10	4	10	y	ENSMUSG00000078606.9	Gvin2	chr7	protein_coding	GTPase, very large interferon inducible, family member 2
known_NIR_16411	chr7	107194938	107236421	+	107194586	107236421	A5SS	ENSMUST00000207852.2	known	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	21	0	21	n	0.14	2	12	2	12	y	0.03	1	37	1	37	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.00	0	17	0	17	n	0.04	1	25	1	25	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	ENSMUSG00000036528.17	Ppfibp2	chr7	protein_coding	PTPRF interacting protein, binding protein 2 (liprin beta 2)
known_NIR_16412	chr7	107326992	107328346	+	107326992;107327955	107327923;107328346	ES	ENSMUST00000040056.15	known	1.00	25	0.0	25	0;0	n	1.00	27	0.0	27	0;0	n	1.00	30	0.0	30	0;0	n	1.00	44	0.0	44	0;0	n	1.00	47	0.0	47	0;0	n	1.00	17	0.0	17	0;0	n	0.91	29	3.0	29	4;2	y	1.00	19	0.0	19	0;0	n	0.98	42	1.0	42	0;2	n	1.00	37	0.0	37	0;0	n	1.00	29	0.0	29	0;0	n	1.00	40	0.0	40	0;0	n	ENSMUSG00000036528.17	Ppfibp2	chr7	protein_coding	PTPRF interacting protein, binding protein 2 (liprin beta 2)
known_NIR_16413	chr7	109118682	109118792	+	109118429	109118792	A5SS	ENSMUST00000143107.2	known	0.00	2	483	2	483	y	0.01	4	578	4	578	y	0.02	16	752	16	752	y	0.00	1	486	1	486	n	0.01	4	696	4	696	y	0.02	7	422	7	422	y	0.01	4	759	4	759	y	0.01	2	385	2	385	y	0.01	3	513	3	513	y	0.01	10	711	10	711	y	0.00	3	670	3	670	y	0.01	6	639	6	639	y	ENSMUSG00000046364.15	Rpl27a	chr7	protein_coding	ribosomal protein L27A
known_NIR_16414	chr7	109169318	109201762	-	109169318	109215505	A5SS	ENSMUST00000084738.5	known	0.80	8	2	8	2	y	1.00	3	0	3	0	n	0.92	49	4	49	4	y	0.90	19	2	19	2	y	0.86	31	5	31	5	y	0.96	47	2	47	2	y	0.86	19	3	19	3	y	1.00	24	0	24	0	n	1.00	8	0	8	0	n	0.93	39	3	39	3	y	1.00	9	0	9	0	n	0.86	25	4	25	4	y	ENSMUSG00000031024.14	Denn2b	chr7	protein_coding	DENN domain containing 2B
known_NIR_16415	chr7	109169318	109201762	-	109169318	109216265	A5SS	ENSMUST00000079282.8	known	1.00	8	0	8	0	n	1.00	3	0	3	0	n	0.98	49	1	49	1	n	0.90	19	2	19	2	y	0.97	31	1	31	1	n	0.96	47	2	47	2	y	0.95	19	1	19	1	n	1.00	24	0	24	0	n	1.00	8	0	8	0	n	0.95	39	2	39	2	y	0.90	9	1	9	1	n	0.96	25	1	25	1	n	ENSMUSG00000031024.14	Denn2b	chr7	protein_coding	DENN domain containing 2B
known_NIR_16416	chr7	109303377	109304160	+	109303377	109304158	A3SS	ENSMUST00000033335.6	known	0.00	0	53	0	53	n	0.00	0	61	0	61	n	0.00	0	55	0	55	n	0.00	0	41	0	41	n	0.00	0	51	0	51	n	0.00	0	33	0	33	n	0.00	0	64	0	64	n	0.00	0	23	0	23	n	0.00	0	64	0	64	n	0.00	0	81	0	81	n	0.05	4	73	4	73	y	0.00	0	73	0	73	n	ENSMUSG00000031023.6	Akip1	chr7	protein_coding	A kinase (PRKA) interacting protein 1
known_NIR_16417	chr7	109349311	109351804	-	109349311	109351278	5pMXE	ENSMUST00000033333.13	known	0.03	2	59	2	59	y	0.04	2	53	2	53	y	0.01	1	104	1	104	n	0.00	0	68	0	68	n	0.00	0	94	0	94	n	0.00	0	47	0	47	n	0.01	1	95	1	95	n	0.00	0	54	0	54	n	0.06	2	34	2	34	y	0.01	1	67	1	67	n	0.00	0	71	0	71	n	0.00	0	59	0	59	n	ENSMUSG00000031021.14	Tmem9b	chr7	protein_coding	TMEM9 domain family, member B
known_NIR_16418	chr7	109349331	109351278	-	109349311	109351278	A3SS	ENSMUST00000033333.13	known	0.00	0	59	0	59	n	0.00	0	53	0	53	n	0.00	0	104	0	104	n	0.00	0	68	0	68	n	0.00	0	94	0	94	n	0.00	0	47	0	47	n	0.02	2	95	2	95	y	0.07	4	54	4	54	y	0.00	0	34	0	34	n	0.00	0	67	0	67	n	0.01	1	71	1	71	n	0.02	1	59	1	59	n	ENSMUSG00000031021.14	Tmem9b	chr7	protein_coding	TMEM9 domain family, member B
known_NIR_16419	chr7	109578696	109580196	-	109578689	109580196	A3SS	ENSMUST00000094097.12	known	0.03	2	77	2	77	y	0.04	2	50	2	50	y	0.06	5	77	5	77	y	0.00	0	50	0	50	n	0.03	3	85	3	85	y	0.00	0	50	0	50	n	0.06	4	68	4	68	y	0.06	3	49	3	49	y	0.02	1	53	1	53	n	0.00	0	49	0	49	n	0.05	3	61	3	61	y	0.03	2	60	2	60	y	ENSMUSG00000047554.15	Tmem41b	chr7	protein_coding	transmembrane protein 41B
known_NIR_16420	chr7	109641322	109642036	+	109641322	109641993	A3SS	ENSMUST00000084731.5	known	0.00	0	49	0	49	n	0.00	0	31	0	31	n	0.00	0	91	0	91	n	0.00	0	105	0	105	n	0.02	2	105	2	105	y	0.00	0	48	0	48	n	0.00	0	67	0	67	n	0.00	0	45	0	45	n	0.00	0	64	0	64	n	0.00	0	72	0	72	n	0.00	0	63	0	63	n	0.00	0	93	0	93	n	ENSMUSG00000066232.5	Ipo7	chr7	protein_coding	importin 7
known_NIR_16421	chr7	109670662	109671326	+	109670662	109671329	A3SS	ENSMUST00000209505.2	known	0.50	2	2	2	2	n	0.40	2	3	2	3	n	0.69	11	5	11	5	y	0.71	10	4	10	4	y	0.57	4	3	4	3	n	0.40	2	3	2	3	n	0.80	4	1	4	1	n	0.80	4	1	4	1	n	0.50	1	1	1	1	n	0.67	4	2	4	2	n	0.67	2	1	2	1	n	0.00	0	2	0	2	n	ENSMUSG00000061079.15	Zfp143	chr7	protein_coding	zinc finger protein 143
known_NIR_16422	chr7	109939281;109940571	109940497;109948062	-	109939281	109948062	cassetteExon	ENSMUST00000164759.8	known	0.03	0.5	14	0;1	14	n	0.04	0.5	11	0;1	11	n	0.16	3.5	19	4;3	19	y	0.08	2.0	22	2;2	22	y	0.05	1.5	29	2;1	29	n	0.17	2.5	12	2;3	12	y	0.15	3.5	20	6;1	20	n	0.09	2.0	20	4;0	20	n	0.30	3.5	8	2;5	8	y	0.04	1.0	23	1;1	23	n	0.08	0.5	6	0;1	6	n	0.02	0.5	21	0;1	21	n	ENSMUSG00000038371.16	Sbf2	chr7	protein_coding	SET binding factor 2
known_NIR_16423	chr7	109939281;109947189	109947094;109948062	-	109939281	109948062	cassetteExon	ENSMUST00000164759.8	known	0.03	0.5	14	0;1	14	n	0.08	1.0	11	0;2	11	n	0.03	0.5	19	0;1	19	n	0.10	2.5	22	2;3	22	y	0.03	1.0	29	2;0	29	n	0.08	1.0	12	1;1	12	n	0.02	0.5	20	0;1	20	n	0.00	0.0	20	0;0	20	n	0.00	0.0	8	0;0	8	n	0.02	0.5	23	0;1	23	n	0.00	0.0	6	0;0	6	n	0.02	0.5	21	0;1	21	n	ENSMUSG00000038371.16	Sbf2	chr7	protein_coding	SET binding factor 2
known_NIR_16424	chr7	110159550	110213914	-	110159553	110213914	A3SS	ENSMUST00000164759.8	known	0.00	0	4	0	4	n	0.75	3	1	3	1	n	0.00	0	9	0	9	n	0.08	1	11	1	11	n	0.31	4	9	4	9	y	0.00	0	6	0	6	n	0.29	2	5	2	5	n	0.25	2	6	2	6	n	0.33	2	4	2	4	n	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	ENSMUSG00000038371.16	Sbf2	chr7	protein_coding	SET binding factor 2
known_NIR_16425	chr7	110415191	110420461	-	110416057	110420461	A3SS	ENSMUST00000177236.8	known	0.07	3	43	3	43	y	0.00	0	38	0	38	n	0.06	3	49	3	49	y	0.07	4	52	4	52	y	0.06	5	84	5	84	y	0.02	1	63	1	63	n	0.01	1	73	1	73	n	0.02	1	62	1	62	n	0.07	4	53	4	53	y	0.05	5	102	5	102	y	0.13	8	55	8	55	y	0.04	3	71	3	71	y	ENSMUSG00000030788.17	Rnf141	chr7	protein_coding	ring finger protein 141
known_NIR_16426	chr7	110416054	110420461	-	110416057	110420461	A3SS	ENSMUST00000177236.8	known	0.00	0	43	0	43	n	0.07	3	38	3	38	y	0.00	0	49	0	49	n	0.04	2	52	2	52	y	0.00	0	84	0	84	n	0.00	0	63	0	63	n	0.00	0	73	0	73	n	0.00	0	62	0	62	n	0.00	0	53	0	53	n	0.00	0	102	0	102	n	0.00	0	55	0	55	n	0.00	0	71	0	71	n	ENSMUSG00000030788.17	Rnf141	chr7	protein_coding	ring finger protein 141
known_NIR_16427	chr7	110430168	110432944	-	110424605	110432944	A3SS	ENSMUST00000177236.8	known	0.02	1	63	1	63	n	0.03	2	61	2	61	y	0.00	0	68	0	68	n	0.00	0	95	0	95	n	0.03	3	117	3	117	y	0.00	0	71	0	71	n	0.03	3	101	3	101	y	0.07	5	68	5	68	y	0.00	0	92	0	92	n	0.02	2	98	2	98	y	0.05	3	61	3	61	y	0.01	1	108	1	108	n	ENSMUSG00000030788.17	Rnf141	chr7	protein_coding	ring finger protein 141
known_NIR_16428	chr7	110433052	110436370	-	110433052	110436284	A5SS	ENSMUST00000177236.8	known	0.06	3	48	3	48	y	0.07	3	38	3	38	y	0.03	2	75	2	75	y	0.03	2	62	2	62	y	0.05	5	96	5	96	y	0.00	0	63	0	63	n	0.03	3	86	3	86	y	0.04	2	55	2	55	y	0.00	0	50	0	50	n	0.06	5	74	5	74	y	0.04	2	46	2	46	y	0.04	4	86	4	86	y	ENSMUSG00000030788.17	Rnf141	chr7	protein_coding	ring finger protein 141
known_NIR_16429	chr7	110433052	110443546	-	110433052;110436477	110436284;110443546	ES	ENSMUST00000177236.8	known	0.00	0	47.0	0	48;46	n	0.05	2	38.0	2	38;38	y	0.00	0	58.5	0	75;42	n	0.03	2	59.0	2	62;56	y	0.04	3	82.0	3	96;68	y	0.06	3	47.5	3	63;32	y	0.01	1	69.5	1	86;53	n	0.09	4	40.0	4	55;25	y	0.02	1	45.0	1	50;40	n	0.05	4	73.0	4	74;72	y	0.02	1	42.0	1	46;38	n	0.01	1	75.5	1	86;65	n	ENSMUSG00000030788.17	Rnf141	chr7	protein_coding	ring finger protein 141
known_NIR_16430	chr7	110433052;110436477	110436370;110443546	-	110433052	110443546	cassetteExon	ENSMUST00000176746.8	known	1.00	24.5	0	3;46	0	n	0.91	20.5	2	3;38	2	y	1.00	22.0	0	2;42	0	n	0.94	29.0	2	2;56	2	y	0.92	36.5	3	5;68	3	y	0.84	16.0	3	0;32	3	n	0.97	28.0	1	3;53	1	n	0.77	13.5	4	2;25	4	y	0.95	20.0	1	0;40	1	n	0.91	38.5	4	5;72	4	y	0.95	20.0	1	2;38	1	n	0.97	34.5	1	4;65	1	n	ENSMUSG00000030788.17	Rnf141	chr7	protein_coding	ring finger protein 141
known_NIR_16431	chr7	110436477	110436616	-	110436477	110443546	A5SS	ENSMUST00000177236.8	known	0.00	0	46	0	46	n	0.00	0	38	0	38	n	0.02	1	42	1	42	n	0.00	0	56	0	56	n	0.00	0	68	0	68	n	0.00	0	32	0	32	n	0.00	0	53	0	53	n	0.00	0	25	0	25	n	0.00	0	40	0	40	n	0.03	2	72	2	72	y	0.00	0	38	0	38	n	0.00	0	65	0	65	n	ENSMUSG00000030788.17	Rnf141	chr7	protein_coding	ring finger protein 141
known_NIR_16432	chr7	110436477	110443006	-	110436477	110443546	A5SS	ENSMUST00000177236.8	known	0.12	6	46	6	46	y	0.03	1	38	1	38	n	0.00	0	42	0	42	n	0.15	10	56	10	56	y	0.11	8	68	8	68	y	0.06	2	32	2	32	y	0.07	4	53	4	53	y	0.07	2	25	2	25	y	0.02	1	40	1	40	n	0.04	3	72	3	72	y	0.05	2	38	2	38	y	0.00	0	65	0	65	n	ENSMUSG00000030788.17	Rnf141	chr7	protein_coding	ring finger protein 141
known_NIR_16433	chr7	110436477	110443224	-	110436477	110443006	A5SS	ENSMUST00000106682.10	known	0.00	0	6	0	6	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.09	1	10	1	10	n	0.20	2	8	2	8	y	0.33	1	2	1	2	n	0.50	4	4	4	4	n	0.75	6	2	6	2	n	0.83	5	1	5	1	n	0.50	3	3	3	3	n	0.00	0	2	0	2	n	1.00	2	0	2	0	n	ENSMUSG00000030788.17	Rnf141	chr7	protein_coding	ring finger protein 141
known_NIR_16434	chr7	110436477	110443224	-	110436477	110443546	A5SS	ENSMUST00000177236.8	known	0.00	0	46	0	46	n	0.03	1	38	1	38	n	0.00	0	42	0	42	n	0.02	1	56	1	56	n	0.03	2	68	2	68	y	0.03	1	32	1	32	n	0.07	4	53	4	53	y	0.19	6	25	6	25	y	0.11	5	40	5	40	y	0.04	3	72	3	72	y	0.00	0	38	0	38	n	0.03	2	65	2	65	y	ENSMUSG00000030788.17	Rnf141	chr7	protein_coding	ring finger protein 141
known_NIR_16435	chr7	110674919	110675903	-	110674919;110675600	110675487;110675903	ES	ENSMUST00000162415.9	known	0.15	88	482.0	88	498;466	y	0.20	96	387.0	96	417;357	y	0.22	227	785.0	227	825;745	y	0.18	130	579.5	130	568;591	y	0.19	165	697.0	165	692;702	y	0.25	131	391.0	131	383;399	y	0.17	145	694.5	145	702;687	y	0.19	98	429.0	98	428;430	y	0.18	93	437.0	93	452;422	y	0.18	162	714.5	162	723;706	y	0.19	115	487.0	115	537;437	y	0.17	140	705.0	140	723;687	y	ENSMUSG00000005610.18	Eif4g2	chr7	protein_coding	eukaryotic translation initiation factor 4, gamma 2
known_NIR_16436	chr7	110680778	110681992	-	110680840	110681992	A3SS	ENSMUST00000162415.9	known	0.00	0	50	0	50	n	0.00	0	32	0	32	n	0.01	1	129	1	129	n	0.00	0	88	0	88	n	0.00	0	118	0	118	n	0.04	3	66	3	66	y	0.00	0	93	0	93	n	0.00	0	52	0	52	n	0.02	1	52	1	52	n	0.03	4	111	4	111	y	0.00	0	58	0	58	n	0.01	1	103	1	103	n	ENSMUSG00000005610.18	Eif4g2	chr7	protein_coding	eukaryotic translation initiation factor 4, gamma 2
known_NIR_16437	chr7	111622953;111646193	111646134;111652424	+	111622953	111652424	cassetteExon	ENSMUST00000106653.4	known	0.02	0.5	25	0;1	25	n	0.00	0.0	19	0;0	19	n	0.06	4.5	69	7;2	69	y	0.05	3.0	54	4;2	54	y	0.01	1.0	69	2;0	69	n	0.03	1.5	47	3;0	47	n	0.34	21.0	40	22;20	40	y	0.01	0.5	44	1;0	44	n	0.00	0.0	25	0;0	25	n	0.09	4.5	43	5;4	43	y	0.02	0.5	27	0;1	27	n	0.09	4.5	47	4;5	47	y	ENSMUSG00000059263.10	Usp47	chr7	protein_coding	ubiquitin specific peptidase 47
known_NIR_16438	chr7	111677166;111679438	111679379;111681637	+	111677166	111681637	cassetteExon	ENSMUST00000106653.4	known	0.25	24.0	71	23;25	71	y	0.21	11.0	41	11;11	41	y	0.29	49.5	120	44;55	120	y	0.21	28.5	109	25;32	109	y	0.27	41.5	113	44;39	113	y	0.35	27.0	51	32;22	51	y	0.28	44.5	112	38;51	112	y	0.35	34.0	62	34;34	62	y	0.26	25.0	73	27;23	73	y	0.26	39.5	115	37;42	115	y	0.17	15.0	72	16;14	72	y	0.23	39.5	132	36;43	132	y	ENSMUSG00000059263.10	Usp47	chr7	protein_coding	ubiquitin specific peptidase 47
known_NIR_16439	chr7	111931246;111944560	111944453;111945929	+	111931246	111945929	cassetteExon	ENSMUST00000050149.12	known	0.20	3.0	12	3;3	12	y	0.00	0.0	8	0;0	8	n	0.03	1.0	30	2;0	30	n	0.00	0.0	5	0;0	5	n	0.00	0.0	37	0;0	37	n	0.00	0.0	13	0;0	13	n	0.06	1.5	23	1;2	23	n	0.00	0.0	26	0;0	26	n	0.03	0.5	19	1;0	19	n	0.07	2.0	25	3;1	25	n	0.00	0.0	13	0;0	13	n	0.05	1.0	18	1;1	18	n	ENSMUSG00000038244.15	Mical2	chr7	protein_coding	microtubule associated monooxygenase, calponin and LIM domain containing 2
known_NIR_16440	chr7	112358846	112405872	+	112358846	112438623	A3SS	ENSMUST00000084705.13	known	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.18	2	9	2	9	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.12	1	7	1	7	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000055320.19	Tead1	chr7	protein_coding	TEA domain family member 1
known_NIR_16441	chr7	112438687	112441247	+	112438687	112441095	A3SS	ENSMUST00000168328.2	known	-	-	-	-	-	-	1.00	1	0	1	0	n	0.82	14	3	14	3	y	0.50	1	1	1	1	n	1.00	2	0	2	0	n	1.00	1	0	1	0	n	0.86	6	1	6	1	n	1.00	3	0	3	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000055320.19	Tead1	chr7	protein_coding	TEA domain family member 1
known_NIR_16442	chr7	112438687;112441309	112441247;112456005	+	112438687;112455271	112441095;112456005	MXE	ENSMUST00000165036.8	known	-	-	-	-	-	-	1.00	1.5	0.0	1;2	0;0	n	0.81	12.5	3.0	14;11	3;3	y	0.25	0.5	1.5	1;0	1;2	n	0.50	1.0	1.0	2;0	0;2	n	0.67	2.0	1.0	1;3	0;2	n	0.38	4.0	6.5	6;2	1;12	n	1.00	1.5	0.0	3;0	0;0	n	1.00	0.5	0.0	1;0	0;0	n	1.00	2.0	0.0	2;2	0;0	n	-	-	-	-	-	-	0.50	1.5	1.5	1;2	0;3	n	ENSMUSG00000055320.19	Tead1	chr7	protein_coding	TEA domain family member 1
known_NIR_16443	chr7	112441309;112455271	112455260;112456005	+	112441309	112456005	cassetteExon	ENSMUST00000084705.13	known	-	-	-	-	-	-	0.00	0.0	2	0;0	2	n	0.19	2.5	11	2;3	11	y	1.00	2.0	0	2;2	0	n	1.00	2.0	0	2;2	0	n	0.40	2.0	3	2;2	3	n	0.84	10.5	2	9;12	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0.0	2	0;0	2	n	-	-	-	-	-	-	0.43	1.5	2	0;3	2	n	ENSMUSG00000055320.19	Tead1	chr7	protein_coding	TEA domain family member 1
known_NIR_16444	chr7	112880009	112882728	+	112880009;112882502	112882464;112882728	ES	ENSMUST00000047321.9	known	0.31	2	4.5	2	5;4	y	0.00	0	1.5	0	2;1	n	0.00	0	29.5	0	31;28	n	0.00	0	1.5	0	2;1	n	0.00	0	14.5	0	15;14	n	0.00	0	17.0	0	19;15	n	0.00	0	11.5	0	11;12	n	0.00	0	13.5	0	15;12	n	0.00	0	5.0	0	4;6	n	0.00	0	5.0	0	6;4	n	0.00	0	0.5	0	0;1	n	0.00	0	1.5	0	1;2	n	ENSMUSG00000055116.9	Arntl	chr7	protein_coding	aryl hydrocarbon receptor nuclear translocator-like
known_NIR_16445	chr7	112880009;112880629	112880609;112882464	+	112880009	112882464	cassetteExon	ENSMUST00000047321.9	known	0.00	0.0	5	0;0	5	n	0.00	0.0	2	0;0	2	n	0.03	1.0	31	2;0	31	n	0.00	0.0	2	0;0	2	n	0.03	0.5	15	0;1	15	n	0.00	0.0	19	0;0	19	n	0.12	1.5	11	2;1	11	n	0.00	0.0	15	0;0	15	n	0.00	0.0	4	0;0	4	n	0.29	2.5	6	3;2	6	y	1.00	1.0	0	1;1	0	n	0.00	0.0	1	0;0	1	n	ENSMUSG00000055116.9	Arntl	chr7	protein_coding	aryl hydrocarbon receptor nuclear translocator-like
known_NIR_16446	chr7	112934725	112950988	-	112934725	112968079	A5SS	ENSMUST00000119278.8	known	-	-	-	-	-	-	-	-	-	-	-	-	0.64	7	4	7	4	y	0.67	4	2	4	2	n	1.00	5	0	5	0	n	0.00	0	1	0	1	n	1.00	8	0	8	0	n	0.50	2	2	2	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.50	2	2	2	2	n	ENSMUSG00000038187.15	Btbd10	chr7	protein_coding	BTB (POZ) domain containing 10
known_NIR_16447	chr7	112964176	112968079	-	112934725	112968079	A3SS	ENSMUST00000119278.8	known	-	-	-	-	-	-	-	-	-	-	-	-	0.60	6	4	6	4	y	0.60	3	2	3	2	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	3	0	3	0	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.67	4	2	4	2	n	ENSMUSG00000038187.15	Btbd10	chr7	protein_coding	BTB (POZ) domain containing 10
known_NIR_16448	chr7	113873695	113875196	-	113873695	113875236	A5SS	ENSMUST00000033008.10	known	0.02	8	351	8	351	y	0.03	8	270	8	270	y	0.03	11	398	11	398	y	0.01	6	449	6	449	y	0.01	4	445	4	445	y	0.01	2	155	2	155	y	0.02	8	398	8	398	y	0.00	0	210	0	210	n	0.02	7	358	7	358	y	0.02	10	476	10	476	y	0.01	4	275	4	275	y	0.02	8	390	8	390	y	ENSMUSG00000030751.19	Psma1	chr7	protein_coding	proteasome subunit alpha 1
known_NIR_16449	chr7	114152045	114153826	-	114152111	114153826	A3SS	ENSMUST00000138712.8	known	0.71	5	2	5	2	n	0.29	2	5	2	5	n	0.36	4	7	4	7	y	1.00	4	0	4	0	n	0.67	6	3	6	3	n	0.67	4	2	4	2	n	0.50	4	4	4	4	n	1.00	3	0	3	0	n	0.86	12	2	12	2	y	0.69	9	4	9	4	y	0.71	5	2	5	2	n	0.89	8	1	8	1	n	ENSMUSG00000030670.17	Cyp2r1	chr7	protein_coding	cytochrome P450, family 2, subfamily r, polypeptide 1
known_NIR_16450	chr7	114152045	114153826	-	114152588	114153826	A3SS	ENSMUST00000032908.15	known	0.09	5	48	5	48	y	0.11	2	17	2	17	y	0.10	4	35	4	35	y	0.07	4	55	4	55	y	0.07	6	78	6	78	y	0.18	4	18	4	18	y	0.06	4	62	4	62	y	0.07	3	37	3	37	y	0.18	12	54	12	54	y	0.14	9	57	9	57	y	0.11	5	41	5	41	y	0.16	8	43	8	43	y	ENSMUSG00000030670.17	Cyp2r1	chr7	protein_coding	cytochrome P450, family 2, subfamily r, polypeptide 1
known_NIR_16451	chr7	114152111	114153826	-	114152588	114153826	A3SS	ENSMUST00000032908.15	known	0.04	2	48	2	48	y	0.23	5	17	5	17	y	0.17	7	35	7	35	y	0.00	0	55	0	55	n	0.04	3	78	3	78	y	0.10	2	18	2	18	y	0.06	4	62	4	62	y	0.00	0	37	0	37	n	0.04	2	54	2	54	y	0.07	4	57	4	57	y	0.05	2	41	2	41	y	0.02	1	43	1	43	n	ENSMUSG00000030670.17	Cyp2r1	chr7	protein_coding	cytochrome P450, family 2, subfamily r, polypeptide 1
known_NIR_16452	chr7	114152588	114161968	-	114152588	114153826	5pMXE	ENSMUST00000128587.8	known	0.08	4	48	4	48	y	0.00	0	17	0	17	n	0.08	3	35	3	35	y	0.10	6	55	6	55	y	0.06	5	78	5	78	y	0.05	1	18	1	18	n	0.05	3	62	3	62	y	0.10	4	37	4	37	y	0.11	7	54	7	54	y	0.11	7	57	7	57	y	0.13	6	41	6	41	y	0.12	6	43	6	43	y	ENSMUSG00000030670.17	Cyp2r1	chr7	protein_coding	cytochrome P450, family 2, subfamily r, polypeptide 1
known_NIR_16453	chr7	114152588	114161968	-	114153967	114161968	A3SS&ES	ENSMUST00000119712.8	known	0.08	4	45	4	45	y	0.00	0	23	0	23	n	0.06	3	44	3	44	y	0.13	6	39	6	39	y	0.07	5	64	5	64	y	0.07	1	14	1	14	n	0.06	3	46	3	46	y	0.09	4	43	4	43	y	0.19	7	30	7	30	y	0.10	7	63	7	63	y	0.10	6	53	6	53	y	0.09	6	63	6	63	y	ENSMUSG00000030670.17	Cyp2r1	chr7	protein_coding	cytochrome P450, family 2, subfamily r, polypeptide 1
known_NIR_16454	chr7	114152588;114153870	114153826;114161968	-	114152588	114161968	cassetteExon	ENSMUST00000211506.2	known	0.86	24.0	4	48;0	4	n	1.00	8.5	0	17;0	0	n	0.85	17.5	3	35;0	3	n	0.82	27.5	6	55;0	6	n	0.89	40.0	5	78;2	5	y	0.90	9.0	1	18;0	1	n	0.91	31.0	3	62;0	3	n	0.84	21.0	4	37;5	4	y	0.79	27.0	7	54;0	7	n	0.80	28.5	7	57;0	7	n	0.78	21.5	6	41;2	6	y	0.78	21.5	6	43;0	6	n	ENSMUSG00000030670.17	Cyp2r1	chr7	protein_coding	cytochrome P450, family 2, subfamily r, polypeptide 1
known_NIR_16455	chr7	114152588;114153967	114153826;114161968	-	114152588	114161968	cassetteExon	ENSMUST00000211506.2	known	0.92	46.5	4	48;45	4	y	1.00	20.0	0	17;23	0	n	0.93	39.5	3	35;44	3	y	0.89	47.0	6	55;39	6	y	0.93	71.0	5	78;64	5	y	0.94	16.0	1	18;14	1	n	0.95	54.0	3	62;46	3	y	0.91	40.0	4	37;43	4	y	0.86	42.0	7	54;30	7	y	0.90	60.0	7	57;63	7	y	0.89	47.0	6	41;53	6	y	0.90	53.0	6	43;63	6	y	ENSMUSG00000030670.17	Cyp2r1	chr7	protein_coding	cytochrome P450, family 2, subfamily r, polypeptide 1
known_NIR_16456	chr7	114153870	114161968	-	114153967	114161968	A3SS	ENSMUST00000032908.15	known	0.00	0	45	0	45	n	0.00	0	23	0	23	n	0.00	0	44	0	44	n	0.00	0	39	0	39	n	0.03	2	64	2	64	y	0.00	0	14	0	14	n	0.00	0	46	0	46	n	0.10	5	43	5	43	y	0.00	0	30	0	30	n	0.00	0	63	0	63	n	0.04	2	53	2	53	y	0.00	0	63	0	63	n	ENSMUSG00000030670.17	Cyp2r1	chr7	protein_coding	cytochrome P450, family 2, subfamily r, polypeptide 1
known_NIR_16457	chr7	114371328	114390187	+	114368267	114390187	A5SS	ENSMUST00000161800.2	known	0.00	0	40	0	40	n	0.00	0	24	0	24	n	0.00	0	98	0	98	n	0.00	0	48	0	48	n	0.03	2	56	2	56	y	0.00	0	41	0	41	n	0.00	0	35	0	35	n	0.00	0	19	0	19	n	0.00	0	30	0	30	n	0.00	0	43	0	43	n	0.00	0	41	0	41	n	0.00	0	40	0	40	n	ENSMUSG00000048782.16	Insc	chr7	protein_coding	INSC spindle orientation adaptor protein
known_NIR_16458	chr7	114403827	114428269	+	114403827;114410963	114410838;114428269	ES	ENSMUST00000169913.8	known	0.06	3	51.0	3	63;39	y	0.09	3	31.5	3	31;32	y	0.06	7	119.0	7	133;105	y	0.08	4	46.0	4	42;50	y	0.02	1	63.0	1	69;57	n	0.08	5	56.5	5	46;67	y	0.00	0	52.0	0	48;56	n	0.02	1	48.5	1	47;50	n	0.06	2	30.0	2	29;31	y	0.05	3	61.0	3	67;55	y	0.08	3	35.5	3	33;38	y	0.00	0	78.0	0	80;76	n	ENSMUSG00000048782.16	Insc	chr7	protein_coding	INSC spindle orientation adaptor protein
known_NIR_16459	chr7	115149394	115179800	-	115149391	115179800	A3SS	ENSMUST00000206034.2	known	0.67	2	1	2	1	n	1.00	6	0	6	0	n	0.77	10	3	10	3	y	1.00	11	0	11	0	n	0.75	9	3	9	3	y	1.00	4	0	4	0	n	0.95	18	1	18	1	n	1.00	10	0	10	0	n	1.00	7	0	7	0	n	0.87	13	2	13	2	y	1.00	6	0	6	0	n	1.00	11	0	11	0	n	ENSMUSG00000051910.14	Sox6	chr7	protein_coding	SRY (sex determining region Y)-box 6
known_NIR_16460	chr7	115149394	115179800	-	115149394;115178373	115178251;115179800	ES	ENSMUST00000072804.11	known	1.00	2	0.0	2	0;0	n	0.80	6	1.5	6	2;1	n	0.83	10	2.0	10	1;3	n	1.00	11	0.0	11	0;0	n	0.75	9	3.0	9	2;4	y	0.62	4	2.5	4	1;4	n	1.00	18	0.0	18	0;0	n	0.91	10	1.0	10	0;2	n	1.00	7	0.0	7	0;0	n	0.90	13	1.5	13	3;0	n	1.00	6	0.0	6	0;0	n	0.85	11	2.0	11	2;2	y	ENSMUSG00000051910.14	Sox6	chr7	protein_coding	SRY (sex determining region Y)-box 6
known_NIR_16461	chr7	115196851	115258751	-	115196854	115258751	A3SS	ENSMUST00000206034.2	known	0.33	3	6	3	6	n	0.50	4	4	4	4	n	0.57	8	6	8	6	y	0.38	3	5	3	5	n	0.70	7	3	7	3	y	0.67	2	1	2	1	n	0.64	7	4	7	4	y	0.55	6	5	6	5	y	0.57	4	3	4	3	n	0.25	3	9	3	9	y	1.00	1	0	1	0	n	0.20	1	4	1	4	n	ENSMUSG00000051910.14	Sox6	chr7	protein_coding	SRY (sex determining region Y)-box 6
known_NIR_16462	chr7	115400844	115459020	-	115400844	115543129	A5SS	ENSMUST00000206034.2	known	1.00	5	0	5	0	n	1.00	2	0	2	0	n	0.86	12	2	12	2	y	0.83	5	1	5	1	n	0.92	12	1	12	1	n	1.00	7	0	7	0	n	0.90	9	1	9	1	n	0.93	13	1	13	1	n	1.00	3	0	3	0	n	1.00	8	0	8	0	n	1.00	1	0	1	0	n	1.00	5	0	5	0	n	ENSMUSG00000051910.14	Sox6	chr7	protein_coding	SRY (sex determining region Y)-box 6
known_NIR_16463	chr7	115692622	115698675	+	115692760	115698675	A5SS	ENSMUST00000032899.12	known	0.05	8	147	8	147	y	0.00	0	151	0	151	n	0.04	9	211	9	211	y	0.05	10	207	10	207	y	0.03	6	197	6	197	y	0.05	5	105	5	105	y	0.04	7	189	7	189	y	0.02	2	114	2	114	y	0.01	2	137	2	137	y	0.03	5	173	5	173	y	0.00	0	144	0	144	n	0.02	4	195	4	195	y	ENSMUSG00000030663.13	1110004F10Rik	chr7	protein_coding	RIKEN cDNA 1110004F10 gene
known_NIR_16464	chr7	115692622	115698675	+	115697188	115698675	A5SS&ES	ENSMUST00000205450.2	known	1.00	8	0	8	0	n	0.00	0	1	0	1	n	0.82	9	2	9	2	y	1.00	10	0	10	0	n	1.00	6	0	6	0	n	1.00	5	0	5	0	n	1.00	7	0	7	0	n	0.67	2	1	2	1	n	1.00	2	0	2	0	n	1.00	5	0	5	0	n	-	-	-	-	-	-	1.00	4	0	4	0	n	ENSMUSG00000030663.13	1110004F10Rik	chr7	protein_coding	RIKEN cDNA 1110004F10 gene
known_NIR_16465	chr7	115692760	115698675	+	115697188	115698675	A5SS&ES	ENSMUST00000205450.2	known	1.00	147	0	147	0	n	0.99	151	1	151	1	n	0.99	211	2	211	2	y	1.00	207	0	207	0	n	1.00	197	0	197	0	n	1.00	105	0	105	0	n	1.00	189	0	189	0	n	0.99	114	1	114	1	n	1.00	137	0	137	0	n	1.00	173	0	173	0	n	1.00	144	0	144	0	n	1.00	195	0	195	0	n	ENSMUSG00000030663.13	1110004F10Rik	chr7	protein_coding	RIKEN cDNA 1110004F10 gene
known_NIR_16466	chr7	115701239	115702430	+	115701239	115702446	A3SS	ENSMUST00000205450.2	known	0.03	5	172	5	172	y	0.00	0	155	0	155	n	0.01	2	239	2	239	y	0.00	0	200	0	200	n	0.02	4	240	4	240	y	0.00	0	115	0	115	n	0.01	2	238	2	238	y	0.01	1	123	1	123	n	0.01	1	115	1	115	n	0.00	0	189	0	189	n	0.02	3	170	3	170	y	0.01	1	193	1	193	n	ENSMUSG00000030663.13	1110004F10Rik	chr7	protein_coding	RIKEN cDNA 1110004F10 gene
known_NIR_16467	chr7	115993593	116016688	-	115993593;116005198	116005095;116016688	ES	ENSMUST00000170430.3	known	0.13	2	13.5	2	13;14	y	0.00	0	9.5	0	10;9	n	0.05	2	41.5	2	43;40	y	0.00	0	15.5	0	18;13	n	0.00	0	15.5	0	17;14	n	0.14	3	19.0	3	14;24	y	0.10	1	9.5	1	12;7	n	0.28	4	10.5	4	9;12	y	0.11	1	8.5	1	7;10	n	0.11	2	17.0	2	19;15	y	0.00	0	7.5	0	9;6	n	0.00	0	20.5	0	22;19	n	ENSMUSG00000030660.10	Pik3c2a	chr7	protein_coding	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha
known_NIR_16468	chr7	116017816;116041913	116041826;116042539	-	116017816	116042539	cassetteExon	ENSMUST00000170430.3	known	0.56	2.5	2	3;2	2	n	0.25	1.0	3	0;2	3	n	0.25	7.0	21	4;10	21	y	0.40	4.0	6	5;3	6	y	0.20	3.5	14	3;4	14	y	0.20	1.5	6	0;3	6	n	0.20	1.0	4	1;1	4	n	0.27	3.0	8	3;3	8	y	1.00	1.0	0	2;0	0	n	0.26	3.5	10	5;2	10	y	0.11	0.5	4	0;1	4	n	0.44	5.5	7	4;7	7	y	ENSMUSG00000030660.10	Pik3c2a	chr7	protein_coding	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha
known_NIR_16469	chr7	117714469	117714963	-	117714469	117715359	A5SS	ENSMUST00000131374.8	known	0.01	5	606	5	606	y	0.01	3	567	3	567	y	0.00	1	1079	1	1079	n	0.00	0	575	0	575	n	0.00	0	856	0	856	n	0.00	1	543	1	543	n	0.00	0	881	0	881	n	0.00	0	460	0	460	n	0.00	0	559	0	559	n	0.00	0	659	0	659	n	0.00	2	638	2	638	y	0.00	0	755	0	755	n	ENSMUSG00000008683.17	Rps15a	chr7	protein_coding	ribosomal protein S15A
known_NIR_16470	chr7	117714469	117715320	-	117714469	117715359	A5SS	ENSMUST00000131374.8	known	0.00	0	606	0	606	n	0.00	0	567	0	567	n	0.00	0	1079	0	1079	n	0.00	0	575	0	575	n	0.00	0	856	0	856	n	0.00	0	543	0	543	n	0.00	2	881	2	881	y	0.00	0	460	0	460	n	0.00	0	559	0	559	n	0.00	0	659	0	659	n	0.00	0	638	0	638	n	0.00	0	755	0	755	n	ENSMUSG00000008683.17	Rps15a	chr7	protein_coding	ribosomal protein S15A
known_NIR_16471	chr7	117721266	117726357	-	117721266;117725738	117725619;117726357	ES	ENSMUST00000032888.10	known	0.00	1	449.5	1	465;434	n	0.00	0	376.0	0	348;404	n	0.00	0	303.0	0	315;291	n	0.00	1	667.0	1	651;683	n	0.00	0	560.5	0	542;579	n	0.00	0	162.5	0	141;184	n	0.00	1	594.5	1	586;603	n	0.00	0	217.5	0	214;221	n	0.00	0	450.5	0	482;419	n	0.00	1	769.5	1	765;774	n	0.00	0	462.0	0	477;447	n	0.00	2	631.0	2	635;627	y	ENSMUSG00000030654.10	Arl6ip1	chr7	protein_coding	ADP-ribosylation factor-like 6 interacting protein 1
known_NIR_16472	chr7	117721266	117726357	-	117725738	117726357	3pMXE	ENSMUST00000206536.2	known	0.00	1	434	1	434	n	0.00	0	404	0	404	n	0.00	0	291	0	291	n	0.00	1	683	1	683	n	0.00	0	579	0	579	n	0.00	0	184	0	184	n	0.00	1	603	1	603	n	0.00	0	221	0	221	n	0.00	0	419	0	419	n	0.00	1	774	1	774	n	0.00	0	447	0	447	n	0.00	2	627	2	627	y	ENSMUSG00000030654.10	Arl6ip1	chr7	protein_coding	ADP-ribosylation factor-like 6 interacting protein 1
known_NIR_16473	chr7	117725738	117728692	-	117725738;117726490	117726357;117728692	ES	ENSMUST00000032888.10	known	0.00	0	337.5	0	434;241	n	0.00	0	315.0	0	404;226	n	0.01	2	240.5	2	291;190	y	0.00	2	558.0	2	683;433	y	0.00	2	495.5	2	579;412	y	0.01	2	154.0	2	184;124	y	0.00	0	467.0	0	603;331	n	0.00	0	184.0	0	221;147	n	0.00	0	351.0	0	419;283	n	0.00	0	633.5	0	774;493	n	0.00	0	360.0	0	447;273	n	0.00	0	483.0	0	627;339	n	ENSMUSG00000030654.10	Arl6ip1	chr7	protein_coding	ADP-ribosylation factor-like 6 interacting protein 1
known_NIR_16474	chr7	117726490	117728692	-	117726490	117728119	5pMXE	ENSMUST00000205182.3	known	1.00	241	0	241	0	n	1.00	226	0	226	0	n	1.00	190	0	190	0	n	1.00	433	0	433	0	n	1.00	412	0	412	0	n	1.00	124	0	124	0	n	1.00	331	1	331	1	n	1.00	147	0	147	0	n	1.00	283	0	283	0	n	0.99	493	3	493	3	y	1.00	273	0	273	0	n	0.99	339	2	339	2	y	ENSMUSG00000030654.10	Arl6ip1	chr7	protein_coding	ADP-ribosylation factor-like 6 interacting protein 1
known_NIR_16475	chr7	118124588	118125047	-	118124517	118125047	A3SS	ENSMUST00000032887.4	known	0.00	0	112	0	112	n	0.00	0	125	0	125	n	0.00	0	116	0	116	n	0.00	0	132	0	132	n	0.00	0	150	0	150	n	0.00	0	64	0	64	n	0.01	2	139	2	139	y	0.00	0	54	0	54	n	0.00	0	91	0	91	n	0.02	3	163	3	163	y	0.00	0	160	0	160	n	0.00	0	160	0	160	n	ENSMUSG00000030652.12	Coq7	chr7	protein_coding	demethyl-Q 7
known_NIR_16476	chr7	118291017	118293716	-	118291017	118304613	A5SS	ENSMUST00000207323.2	known	1.00	331	0	331	0	n	1.00	401	0	401	0	n	1.00	540	1	540	1	n	1.00	346	0	346	0	n	1.00	432	0	432	0	n	1.00	256	0	256	0	n	1.00	483	0	483	0	n	1.00	223	0	223	0	n	1.00	199	0	199	0	n	1.00	451	0	451	0	n	1.00	318	0	318	0	n	0.99	309	2	309	2	y	ENSMUSG00000033917.16	Gde1	chr7	protein_coding	glycerophosphodiester phosphodiesterase 1
known_NIR_16477	chr7	118297949	118304613	-	118291017	118304613	A3SS	ENSMUST00000207323.2	known	1.00	17	0	17	0	n	1.00	9	0	9	0	n	0.97	31	1	31	1	n	1.00	24	0	24	0	n	1.00	19	0	19	0	n	1.00	12	0	12	0	n	1.00	27	0	27	0	n	1.00	16	0	16	0	n	1.00	9	0	9	0	n	1.00	33	0	33	0	n	1.00	21	0	21	0	n	0.88	14	2	14	2	y	ENSMUSG00000033917.16	Gde1	chr7	protein_coding	glycerophosphodiester phosphodiesterase 1
known_NIR_16478	chr7	118297949	118304613	-	118297953	118304613	A3SS	ENSMUST00000038791.15	known	0.08	17	209	17	209	y	0.04	9	200	9	200	y	0.08	31	379	31	379	y	0.09	24	243	24	243	y	0.06	19	291	19	291	y	0.06	12	192	12	192	y	0.08	27	298	27	298	y	0.09	16	161	16	161	y	0.06	9	130	9	130	y	0.10	33	301	33	301	y	0.10	21	181	21	181	y	0.06	14	219	14	219	y	ENSMUSG00000033917.16	Gde1	chr7	protein_coding	glycerophosphodiester phosphodiesterase 1
known_NIR_16479	chr7	118297953	118304494	-	118297953	118304613	A5SS	ENSMUST00000038791.15	known	0.00	0	209	0	209	n	0.00	0	200	0	200	n	0.01	2	379	2	379	y	0.00	0	243	0	243	n	0.00	0	291	0	291	n	0.00	0	192	0	192	n	0.00	0	298	0	298	n	0.00	0	161	0	161	n	0.00	0	130	0	130	n	0.00	0	301	0	301	n	0.00	0	181	0	181	n	0.00	0	219	0	219	n	ENSMUSG00000033917.16	Gde1	chr7	protein_coding	glycerophosphodiester phosphodiesterase 1
known_NIR_16480	chr7	118297953	118304613	-	118291017	118304613	A3SS	ENSMUST00000207323.2	known	1.00	209	0	209	0	n	1.00	200	0	200	0	n	1.00	379	1	379	1	n	1.00	243	0	243	0	n	1.00	291	0	291	0	n	1.00	192	0	192	0	n	1.00	298	0	298	0	n	1.00	161	0	161	0	n	1.00	130	0	130	0	n	1.00	301	0	301	0	n	1.00	181	0	181	0	n	0.99	219	2	219	2	y	ENSMUSG00000033917.16	Gde1	chr7	protein_coding	glycerophosphodiester phosphodiesterase 1
known_NIR_16481	chr7	118331676	118334491	+	118331676;118332195	118332110;118334491	ES	ENSMUST00000106557.8	known	0.94	8	0.5	8	0;1	n	0.89	8	1.0	8	2;0	n	0.76	11	3.5	11	0;7	n	0.83	5	1.0	5	2;0	n	0.67	5	2.5	5	2;3	y	0.80	2	0.5	2	0;1	n	0.80	4	1.0	4	0;2	n	1.00	1	0.0	1	0;0	n	1.00	3	0.0	3	0;0	n	0.75	3	1.0	3	1;1	n	1.00	2	0.0	2	0;0	n	0.67	5	2.5	5	3;2	y	ENSMUSG00000033904.17	Ccp110	chr7	protein_coding	centriolar coiled coil protein 110
known_NIR_16482	chr7	118359468	118360989	+	118359468	118365588	A3SS	ENSMUST00000059390.13	known	0.07	2	25	2	25	y	0.21	6	23	6	23	y	0.12	4	28	4	28	y	0.09	3	31	3	31	y	0.07	3	38	3	38	y	0.17	3	15	3	15	y	0.14	6	37	6	37	y	0.00	0	20	0	20	n	0.11	3	25	3	25	y	0.04	1	27	1	27	n	0.18	5	23	5	23	y	0.03	1	36	1	36	n	ENSMUSG00000030982.20	Vps35l	chr7	protein_coding	VPS35 endosomal protein sorting factor like
known_NIR_16483	chr7	118379522	118382978	+	118379522	118389233	A3SS	ENSMUST00000059390.13	known	0.00	0	27	0	27	n	0.00	0	32	0	32	n	0.00	0	54	0	54	n	0.00	0	41	0	41	n	0.03	1	34	1	34	n	0.00	0	17	0	17	n	0.00	0	46	0	46	n	0.00	0	19	0	19	n	0.00	0	24	0	24	n	0.00	0	29	0	29	n	0.00	0	29	0	29	n	0.12	4	28	4	28	y	ENSMUSG00000030982.20	Vps35l	chr7	protein_coding	VPS35 endosomal protein sorting factor like
known_NIR_16484	chr7	118449912	118451626	-	118449912	118454846	A5SS	ENSMUST00000033277.9	known	0.96	43	2	43	2	y	0.98	44	1	44	1	n	0.98	55	1	55	1	n	0.98	54	1	54	1	n	0.95	78	4	78	4	y	0.88	22	3	22	3	y	1.00	46	0	46	0	n	0.92	46	4	46	4	y	1.00	41	0	41	0	n	0.96	47	2	47	2	y	0.96	48	2	48	2	y	0.98	41	1	41	1	n	ENSMUSG00000030980.18	Knop1	chr7	protein_coding	lysine rich nucleolar protein 1
known_NIR_16485	chr7	118449912	118452112	-	118449912	118451626	A5SS	ENSMUST00000116280.9	known	0.09	4	43	4	43	y	0.12	6	44	6	44	y	0.17	11	55	11	55	y	0.19	13	54	13	54	y	0.08	7	78	7	78	y	0.29	9	22	9	22	y	0.18	10	46	10	46	y	0.12	6	46	6	46	y	0.24	13	41	13	41	y	0.23	14	47	14	47	y	0.17	10	48	10	48	y	0.21	11	41	11	41	y	ENSMUSG00000030980.18	Knop1	chr7	protein_coding	lysine rich nucleolar protein 1
known_NIR_16486	chr7	118449912	118454846	-	118449912;118452563	118451626;118454846	ES	ENSMUST00000116280.9	known	0.06	2	31.0	2	43;19	y	0.03	1	30.5	1	44;17	n	0.02	1	47.0	1	55;39	n	0.03	1	35.5	1	54;17	n	0.07	4	54.5	4	78;31	y	0.12	3	21.5	3	22;21	y	0.00	0	32.5	0	46;19	n	0.13	4	26.0	4	46;6	y	0.00	0	34.0	0	41;27	n	0.05	2	36.5	2	47;26	y	0.06	2	33.5	2	48;19	y	0.03	1	35.0	1	41;29	n	ENSMUSG00000030980.18	Knop1	chr7	protein_coding	lysine rich nucleolar protein 1
known_NIR_16487	chr7	118449912	118454846	-	118449912;118452563	118452112;118454846	ES	ENSMUST00000063607.12	known	0.15	2	11.5	2	4;19	y	0.08	1	11.5	1	6;17	n	0.04	1	25.0	1	11;39	n	0.06	1	15.0	1	13;17	n	0.17	4	19.0	4	7;31	y	0.17	3	15.0	3	9;21	y	0.00	0	14.5	0	10;19	n	0.40	4	6.0	4	6;6	y	0.00	0	20.0	0	13;27	n	0.09	2	20.0	2	14;26	y	0.12	2	14.5	2	10;19	y	0.05	1	20.0	1	11;29	n	ENSMUSG00000030980.18	Knop1	chr7	protein_coding	lysine rich nucleolar protein 1
known_NIR_16488	chr7	119094340;119095831	119095760;119097181	-	119094340	119097181	cassetteExon	ENSMUST00000033267.4	known	0.72	13.0	5	11;15	5	y	0.80	8.0	2	13;3	2	y	0.78	3.5	1	2;5	1	n	1.00	10.5	0	11;10	0	n	0.83	5.0	1	4;6	1	n	1.00	2.5	0	5;0	0	n	0.90	9.5	1	6;13	1	n	0.60	1.5	1	0;3	1	n	1.00	11.5	0	9;14	0	n	0.91	19.5	2	19;20	2	y	0.95	18.5	1	13;24	1	n	0.94	16.5	1	17;16	1	n	ENSMUSG00000030968.4	Pdilt	chr7	protein_coding	protein disulfide isomerase-like, testis expressed
known_NIR_16489	chr7	119125660;119126616	119126527;119127642	+	119125660	119127642	cassetteExon	ENSMUST00000066465.3	known	0.12	13.0	92	18;8	92	y	0.16	10.5	54	8;13	54	y	0.22	4.0	14	3;5	14	y	0.20	27.5	110	21;34	110	y	0.12	18.0	127	23;13	127	y	0.29	7.0	17	6;8	17	y	0.20	20.0	82	20;20	82	y	0.10	3.5	31	3;4	31	y	0.18	26.5	117	19;34	117	y	0.19	41.0	177	40;42	177	y	0.19	23.0	101	27;19	101	y	0.19	36.5	158	36;37	158	y	ENSMUSG00000030972.7	Acsm5	chr7	protein_coding	acyl-CoA synthetase medium-chain family member 5
known_NIR_16490	chr7	119133637	119133985	+	119133600	119133985	A5SS	ENSMUST00000207796.2	known	0.16	27	143	27	143	y	0.14	16	95	16	95	y	0.19	5	21	5	21	y	0.23	41	137	41	137	y	0.18	37	164	37	164	y	0.30	9	21	9	21	y	0.18	32	148	32	148	y	0.25	16	47	16	47	y	0.15	35	194	35	194	y	0.18	60	276	60	276	y	0.16	32	174	32	174	y	0.19	56	234	56	234	y	ENSMUSG00000030972.7	Acsm5	chr7	protein_coding	acyl-CoA synthetase medium-chain family member 5
known_NIR_16491	chr7	119210784	119219448	-	119212110	119219448	3pMXE	ENSMUST00000207364.2	known	0.95	35	2	35	2	y	1.00	33	0	33	0	n	0.95	53	3	53	3	y	1.00	45	0	45	0	n	0.98	51	1	51	1	n	1.00	27	0	27	0	n	0.95	54	3	54	3	y	1.00	31	0	31	0	n	0.95	41	2	41	2	y	1.00	51	0	51	0	n	0.97	36	1	36	1	n	1.00	67	0	67	0	n	ENSMUSG00000109093.2	Gm19950	chr7	lncRNA	predicted gene, 19950
known_NIR_16492	chr7	119210784;119212110	119211994;119219448	-	119210784	119219448	cassetteExon	ENSMUST00000207110.2	known	0.05	2.0	35	2;2	35	y	0.01	0.5	33	1;0	33	n	0.09	5.0	53	7;3	53	y	0.02	1.0	45	2;0	45	n	0.01	0.5	51	0;1	51	n	0.07	2.0	27	4;0	27	n	0.05	3.0	54	3;3	54	y	0.02	0.5	31	1;0	31	n	0.12	5.5	41	9;2	41	y	0.01	0.5	51	1;0	51	n	0.05	2.0	36	3;1	36	n	0.06	4.5	67	9;0	67	n	ENSMUSG00000109093.2	Gm19950	chr7	lncRNA	predicted gene, 19950
known_NIR_16493	chr7	119210784;119212113	119211994;119219448	-	119210784	119219448	cassetteExon	ENSMUST00000207110.2	known	0.03	1.0	35	2;0	35	n	0.01	0.5	33	1;0	33	n	0.08	4.5	53	7;2	53	y	0.02	1.0	45	2;0	45	n	0.00	0.0	51	0;0	51	n	0.08	2.5	27	4;1	27	n	0.03	1.5	54	3;0	54	n	0.02	0.5	31	1;0	31	n	0.10	4.5	41	9;0	41	n	0.02	1.0	51	1;1	51	n	0.04	1.5	36	3;0	36	n	0.08	5.5	67	9;2	67	y	ENSMUSG00000109093.2	Gm19950	chr7	lncRNA	predicted gene, 19950
known_NIR_16494	chr7	119253678	119255205	+	119253678;119254719	119254639;119255205	ES	ENSMUST00000047929.13	known	0.00	0	1071.0	0	977;1165	n	0.00	2	1003.5	2	972;1035	y	0.00	0	445.0	0	414;476	n	0.01	6	1060.5	6	986;1135	y	0.00	3	1378.5	3	1360;1397	y	0.00	0	406.5	0	382;431	n	0.00	2	1299.0	2	1230;1368	y	0.00	2	466.5	2	468;465	y	0.00	3	1003.5	3	953;1054	y	0.00	1	1497.0	1	1453;1541	n	0.00	2	1188.0	2	1099;1277	y	0.00	0	1182.0	0	1145;1219	n	ENSMUSG00000033533.15	Acsm1	chr7	protein_coding	acyl-CoA synthetase medium-chain family member 1
known_NIR_16495	chr7	119360205	119366114	+	119360205;119365797	119365596;119366114	ES	ENSMUST00000106528.8	known	0.75	19	6.5	19	0;13	n	0.76	16	5.0	16	0;10	n	0.79	21	5.5	21	2;9	y	0.92	42	3.5	42	1;6	n	0.76	40	12.5	40	4;21	y	0.91	20	2.0	20	0;4	n	0.81	51	12.0	51	5;19	y	0.75	20	6.5	20	2;11	y	0.76	24	7.5	24	0;15	n	0.88	59	8.0	59	4;12	y	0.80	28	7.0	28	1;13	n	0.74	39	13.5	39	1;26	n	ENSMUSG00000030935.16	Acsm3	chr7	protein_coding	acyl-CoA synthetase medium-chain family member 3
known_NIR_16496	chr7	119360205	119366114	+	119365797	119366114	5pMXE	ENSMUST00000106526.2	known	0.59	19	13	19	13	y	0.62	16	10	16	10	y	0.70	21	9	21	9	y	0.88	42	6	42	6	y	0.66	40	21	40	21	y	0.83	20	4	20	4	y	0.73	51	19	51	19	y	0.65	20	11	20	11	y	0.62	24	15	24	15	y	0.83	59	12	59	12	y	0.68	28	13	28	13	y	0.60	39	26	39	26	y	ENSMUSG00000030935.16	Acsm3	chr7	protein_coding	acyl-CoA synthetase medium-chain family member 3
known_NIR_16497	chr7	119360302	119366114	+	119360205	119366114	A5SS	ENSMUST00000106527.8	known	0.78	68	19	68	19	y	0.72	41	16	41	16	y	0.57	28	21	28	21	y	0.66	83	42	83	42	y	0.71	97	40	97	40	y	0.60	30	20	30	20	y	0.67	102	51	102	51	y	0.68	43	20	43	20	y	0.72	61	24	61	24	y	0.70	136	59	136	59	y	0.67	57	28	57	28	y	0.68	84	39	84	39	y	ENSMUSG00000030935.16	Acsm3	chr7	protein_coding	acyl-CoA synthetase medium-chain family member 3
known_NIR_16498	chr7	119360302	119366114	+	119365797	119366114	A5SS&ES	ENSMUST00000106528.8	known	0.84	68	13	68	13	y	0.80	41	10	41	10	y	0.76	28	9	28	9	y	0.93	83	6	83	6	y	0.82	97	21	97	21	y	0.88	30	4	30	4	y	0.84	102	19	102	19	y	0.80	43	11	43	11	y	0.80	61	15	61	15	y	0.92	136	12	136	12	y	0.81	57	13	57	13	y	0.76	84	26	84	26	y	ENSMUSG00000030935.16	Acsm3	chr7	protein_coding	acyl-CoA synthetase medium-chain family member 3
known_NIR_16499	chr7	119385767	119385962	-	119368115	119385962	A3SS	ENSMUST00000106523.8	known	0.29	2	5	2	5	n	1.00	7	0	7	0	n	0.88	15	2	15	2	y	1.00	13	0	13	0	n	1.00	15	0	15	0	n	0.80	8	2	8	2	y	1.00	9	0	9	0	n	1.00	8	0	8	0	n	1.00	1	0	1	0	n	1.00	14	0	14	0	n	0.75	3	1	3	1	n	1.00	6	0	6	0	n	ENSMUSG00000030929.18	Eri2	chr7	protein_coding	exoribonuclease 2
known_NIR_16500	chr7	119386050	119386957	-	119386050	119386627	A5SS	ENSMUST00000133926.2	known	0.50	3	3	3	3	n	0.00	0	2	0	2	n	0.22	2	7	2	7	n	0.12	1	7	1	7	n	0.40	4	6	4	6	y	0.33	3	6	3	6	n	0.25	2	6	2	6	n	0.12	1	7	1	7	n	0.00	0	5	0	5	n	0.33	2	4	2	4	n	0.22	2	7	2	7	n	0.50	5	5	5	5	y	ENSMUSG00000030929.18	Eri2	chr7	protein_coding	exoribonuclease 2
known_NIR_16501	chr7	119386050	119386957	-	119386050;119386708	119386627;119386957	ES	ENSMUST00000106523.8	known	0.55	3	2.5	3	3;2	n	0.00	0	3.0	0	2;4	n	0.20	2	8.0	2	7;9	y	0.20	1	4.0	1	7;1	n	0.38	4	6.5	4	6;7	y	0.32	3	6.5	3	6;7	y	0.22	2	7.0	2	6;8	y	0.13	1	6.5	1	7;6	n	0.00	0	3.0	0	5;1	n	0.31	2	4.5	2	4;5	y	0.31	2	4.5	2	7;2	y	0.45	5	6.0	5	5;7	y	ENSMUSG00000030929.18	Eri2	chr7	protein_coding	exoribonuclease 2
known_NIR_16502	chr7	119386050	119386957	-	119386708	119386957	A3SS	ENSMUST00000125595.8	known	0.60	3	2	3	2	n	0.00	0	4	0	4	n	0.18	2	9	2	9	y	0.50	1	1	1	1	n	0.36	4	7	4	7	y	0.30	3	7	3	7	y	0.20	2	8	2	8	y	0.14	1	6	1	6	n	0.00	0	1	0	1	n	0.29	2	5	2	5	n	0.50	2	2	2	2	n	0.42	5	7	5	7	y	ENSMUSG00000030929.18	Eri2	chr7	protein_coding	exoribonuclease 2
known_NIR_16503	chr7	119391566	119391654	-	119391571	119391654	A3SS	ENSMUST00000106523.8	known	0.25	3	9	3	9	y	0.40	2	3	2	3	n	0.40	4	6	4	6	y	0.50	2	2	2	2	n	0.12	2	14	2	14	y	0.00	0	8	0	8	n	0.44	4	5	4	5	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.29	2	5	2	5	n	ENSMUSG00000030929.18	Eri2	chr7	protein_coding	exoribonuclease 2
known_NIR_16504	chr7	119433624	119442465	+	119433624	119447955	A3SS	ENSMUST00000033218.15	known	1.00	8	0	8	0	n	0.38	3	5	3	5	n	-	-	-	-	-	-	0.88	7	1	7	1	n	0.81	13	3	13	3	y	-	-	-	-	-	-	1.00	2	0	2	0	n	-	-	-	-	-	-	1.00	2	0	2	0	n	0.50	3	3	3	3	n	0.57	4	3	4	3	n	0.67	2	1	2	1	n	ENSMUSG00000030924.17	Rexo5	chr7	protein_coding	RNA exonuclease 5
known_NIR_16505	chr7	119433624	119443071	+	119433624;119442557	119442465;119443071	ES	ENSMUST00000106520.9	known	0.00	0	7.5	0	8;7	n	0.00	0	4.0	0	3;5	n	0.67	1	0.5	1	0;1	n	0.00	0	5.0	0	7;3	n	0.15	2	11.5	2	13;10	y	-	-	-	-	-	-	0.14	1	6.0	1	2;10	n	0.00	0	3.0	0	0;6	n	0.57	4	3.0	4	2;4	y	0.14	1	6.0	1	3;9	n	0.40	2	3.0	2	4;2	n	0.40	1	1.5	1	2;1	n	ENSMUSG00000030924.17	Rexo5	chr7	protein_coding	RNA exonuclease 5
known_NIR_16506	chr7	119443287	119443482	+	119443287	119447955	A3SS	ENSMUST00000133758.9	known	0.33	2	4	2	4	n	0.62	10	6	10	6	y	0.00	0	1	0	1	n	1.00	3	0	3	0	n	0.60	3	2	3	2	n	0.67	2	1	2	1	n	0.17	1	5	1	5	n	1.00	2	0	2	0	n	1.00	2	0	2	0	n	0.50	2	2	2	2	n	0.56	5	4	5	4	n	0.78	7	2	7	2	n	ENSMUSG00000030924.17	Rexo5	chr7	protein_coding	RNA exonuclease 5
known_NIR_16507	chr7	119443287	119444606	+	119443287;119443669	119443482;119444606	ES	ENSMUST00000106520.9	known	0.00	0	3.0	0	2;4	n	0.00	0	6.0	0	10;2	n	0.00	0	0.5	0	0;1	n	0.40	2	3.0	2	3;3	n	0.00	0	2.5	0	3;2	n	0.00	0	1.0	0	2;0	n	0.67	1	0.5	1	1;0	n	0.00	0	2.0	0	2;2	n	0.00	0	1.5	0	2;1	n	0.33	1	2.0	1	2;2	n	0.33	2	4.0	2	5;3	y	0.32	3	6.5	3	7;6	y	ENSMUSG00000030924.17	Rexo5	chr7	protein_coding	RNA exonuclease 5
known_NIR_16508	chr7	119443287;119444724	119444606;119447955	+	119443287	119447955	cassetteExon	ENSMUST00000133758.9	known	0.20	1.0	4	0;2	4	n	0.33	3.0	6	0;6	6	n	0.33	0.5	1	0;1	1	n	1.00	2.5	0	2;3	0	n	0.56	2.5	2	0;5	2	n	0.60	1.5	1	0;3	1	n	0.60	7.5	5	1;14	5	n	1.00	0.5	0	0;1	0	n	1.00	0.5	0	0;1	0	n	0.71	5.0	2	1;9	2	n	0.47	3.5	4	2;5	4	y	0.64	3.5	2	3;4	2	n	ENSMUSG00000030924.17	Rexo5	chr7	protein_coding	RNA exonuclease 5
known_NIR_16509	chr7	119444724	119447955	+	119433624	119447955	A5SS	ENSMUST00000033218.15	known	1.00	2	0	2	0	n	0.55	6	5	6	5	y	1.00	1	0	1	0	n	0.75	3	1	3	1	n	0.62	5	3	5	3	n	1.00	3	0	3	0	n	1.00	14	0	14	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.75	9	3	9	3	y	0.62	5	3	5	3	n	0.80	4	1	4	1	n	ENSMUSG00000030924.17	Rexo5	chr7	protein_coding	RNA exonuclease 5
known_NIR_16510	chr7	119495113	119509027	+	119499531	119509027	5pMXE	ENSMUST00000106516.2	known	0.40	2	3	2	3	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.25	2	6	2	6	n	0.17	1	5	1	5	n	0.67	4	2	4	2	n	0.67	2	1	2	1	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.33	4	8	4	8	y	ENSMUSG00000030922.13	Lyrm1	chr7	protein_coding	LYR motif containing 1
known_NIR_16511	chr7	119495113;119499531	119499334;119509027	+	119495113	119509027	cassetteExon	ENSMUST00000106518.9	known	0.43	1.5	2	0;3	2	n	0.00	0.0	1	0;0	1	n	1.00	2.0	0	1;3	0	n	0.60	3.0	2	0;6	2	n	0.78	3.5	1	2;5	1	n	0.27	1.5	4	1;2	4	n	0.33	1.0	2	1;1	2	n	1.00	2.5	0	0;5	0	n	1.00	1.5	0	0;3	0	n	1.00	2.5	0	0;5	0	n	1.00	2.0	0	0;4	0	n	0.58	5.5	4	3;8	4	y	ENSMUSG00000030922.13	Lyrm1	chr7	protein_coding	LYR motif containing 1
known_NIR_16512	chr7	120234545	120236885	+	120234817	120236885	5pMXE	ENSMUST00000123704.9	known	0.98	314	5	314	5	y	1.00	235	1	235	1	n	1.00	335	0	335	0	n	1.00	445	1	445	1	n	1.00	433	1	433	1	n	1.00	177	0	177	0	n	1.00	423	1	423	1	n	1.00	242	1	242	1	n	1.00	343	0	343	0	n	1.00	512	1	512	1	n	1.00	352	1	352	1	n	1.00	518	0	518	0	n	ENSMUSG00000030884.13	Uqcrc2	chr7	protein_coding	ubiquinol cytochrome c reductase core protein 2
known_NIR_16513	chr7	120325555	120331588	+	120325555	120329700	3pMXE	ENSMUST00000207065.2	known	0.17	2	10	2	10	y	0.21	4	15	4	15	y	0.04	1	27	1	27	n	0.29	5	12	5	12	y	0.19	6	25	6	25	y	0.00	0	14	0	14	n	0.43	10	13	10	13	y	0.13	2	13	2	13	y	0.13	2	13	2	13	y	0.21	6	22	6	22	y	0.40	8	12	8	12	y	0.19	3	13	3	13	y	ENSMUSG00000046096.8	Mosmo	chr7	protein_coding	modulator of smoothened
known_NIR_16514	chr7	120444012	120457567	+	120442323	120457567	A5SS	ENSMUST00000047875.16	known	0.17	2	10	2	10	y	0.14	1	6	1	6	n	-	-	-	-	-	-	0.00	0	17	0	17	n	0.00	0	14	0	14	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	14	0	14	n	0.00	0	15	0	15	n	0.00	0	5	0	5	n	ENSMUSG00000035064.18	Eef2k	chr7	protein_coding	eukaryotic elongation factor-2 kinase
known_NIR_16515	chr7	120488974	120494407	+	120491276	120494407	5pMXE	ENSMUST00000128813.2	known	0.06	2	33	2	33	y	0.00	0	17	0	17	n	0.00	0	15	0	15	n	0.00	0	31	0	31	n	0.00	0	49	0	49	n	0.00	0	19	0	19	n	0.00	0	40	0	40	n	0.00	0	26	0	26	n	0.05	1	19	1	19	n	0.10	3	27	3	27	y	0.03	1	33	1	33	n	0.00	0	21	0	21	n	ENSMUSG00000035064.18	Eef2k	chr7	protein_coding	eukaryotic elongation factor-2 kinase
known_NIR_16516	chr7	120488974;120491276	120490819;120494407	+	120488974	120494407	cassetteExon	ENSMUST00000146482.3	known	0.93	27.5	2	22;33	2	y	1.00	15.0	0	13;17	0	n	1.00	13.0	0	11;15	0	n	1.00	26.0	0	21;31	0	n	1.00	36.5	0	24;49	0	n	1.00	13.5	0	8;19	0	n	1.00	33.0	0	26;40	0	n	1.00	21.0	0	16;26	0	n	0.95	18.5	1	18;19	1	n	0.91	30.0	3	33;27	3	y	0.96	27.5	1	22;33	1	n	1.00	21.0	0	21;21	0	n	ENSMUSG00000035064.18	Eef2k	chr7	protein_coding	eukaryotic elongation factor-2 kinase
known_NIR_16517	chr7	120634899	120647061	+	120634198	120647061	A5SS	ENSMUST00000033163.8	known	0.00	0	103	0	103	n	0.00	0	90	0	90	n	0.00	0	213	0	213	n	0.00	0	103	0	103	n	0.00	0	169	0	169	n	0.01	1	134	1	134	n	0.02	3	151	3	151	y	0.02	2	88	2	88	y	0.00	0	89	0	89	n	0.01	1	138	1	138	n	0.00	0	85	0	85	n	0.00	0	109	0	109	n	ENSMUSG00000030876.8	Mettl9	chr7	protein_coding	methyltransferase like 9
known_NIR_16518	chr7	120635024	120647061	+	120634198	120647061	A5SS	ENSMUST00000033163.8	known	0.00	0	103	0	103	n	0.01	1	90	1	90	n	0.01	3	213	3	213	y	0.01	1	103	1	103	n	0.00	0	169	0	169	n	0.00	0	134	0	134	n	0.01	1	151	1	151	n	0.00	0	88	0	88	n	0.00	0	89	0	89	n	0.00	0	138	0	138	n	0.00	0	85	0	85	n	0.01	1	109	1	109	n	ENSMUSG00000030876.8	Mettl9	chr7	protein_coding	methyltransferase like 9
known_NIR_16519	chr7	121639070	121643525	-	121639119	121643525	A3SS	ENSMUST00000151530.8	known	0.97	34	1	34	1	n	1.00	35	0	35	0	n	1.00	38	0	38	0	n	1.00	26	0	26	0	n	1.00	45	0	45	0	n	1.00	30	0	30	0	n	0.95	41	2	41	2	y	1.00	24	0	24	0	n	1.00	23	0	23	0	n	0.97	34	1	34	1	n	1.00	30	0	30	0	n	0.96	22	1	22	1	n	ENSMUSG00000030871.12	Ears2	chr7	protein_coding	glutamyl-tRNA synthetase 2, mitochondrial
known_NIR_16520	chr7	121687829	121690809	-	121687561	121690809	A3SS	ENSMUST00000033157.10	known	0.02	1	47	1	47	n	0.00	0	37	0	37	n	0.00	0	63	0	63	n	0.00	0	46	0	46	n	0.02	1	47	1	47	n	0.00	0	16	0	16	n	0.04	2	45	2	45	y	0.00	0	25	0	25	n	0.00	0	39	0	39	n	0.00	0	63	0	63	n	0.00	0	53	0	53	n	0.03	2	59	2	59	y	ENSMUSG00000030869.12	Ndufab1	chr7	protein_coding	NADH:ubiquinone oxidoreductase subunit AB1
known_NIR_16521	chr7	121690186	121690809	-	121687561	121690809	A3SS	ENSMUST00000033157.10	known	0.89	366	47	366	47	y	0.91	391	37	391	37	y	0.82	286	63	286	63	y	0.87	320	46	320	46	y	0.89	389	47	389	47	y	0.92	184	16	184	16	y	0.91	470	45	470	45	y	0.89	195	25	195	25	y	0.89	306	39	306	39	y	0.88	443	63	443	63	y	0.89	429	53	429	53	y	0.87	411	59	411	59	y	ENSMUSG00000030869.12	Ndufab1	chr7	protein_coding	NADH:ubiquinone oxidoreductase subunit AB1
known_NIR_16522	chr7	121690186	121690809	-	121687829	121690809	A3SS	ENSMUST00000146964.2	known	1.00	366	1	366	1	n	1.00	391	0	391	0	n	1.00	286	0	286	0	n	1.00	320	0	320	0	n	1.00	389	1	389	1	n	1.00	184	0	184	0	n	1.00	470	2	470	2	y	1.00	195	0	195	0	n	1.00	306	0	306	0	n	1.00	443	0	443	0	n	1.00	429	0	429	0	n	1.00	411	2	411	2	y	ENSMUSG00000030869.12	Ndufab1	chr7	protein_coding	NADH:ubiquinone oxidoreductase subunit AB1
known_NIR_16523	chr7	121690212	121690809	-	121687561	121690809	A3SS	ENSMUST00000033157.10	known	0.15	8	47	8	47	y	0.03	1	37	1	37	n	0.00	0	63	0	63	n	0.06	3	46	3	46	y	0.04	2	47	2	47	y	0.00	0	16	0	16	n	0.08	4	45	4	45	y	0.07	2	25	2	25	y	0.03	1	39	1	39	n	0.05	3	63	3	63	y	0.04	2	53	2	53	y	0.08	5	59	5	59	y	ENSMUSG00000030869.12	Ndufab1	chr7	protein_coding	NADH:ubiquinone oxidoreductase subunit AB1
known_NIR_16524	chr7	121690212	121690809	-	121690186	121690809	A3SS	ENSMUST00000123296.8	known	0.02	8	366	8	366	y	0.00	1	391	1	391	n	0.00	0	286	0	286	n	0.01	3	320	3	320	y	0.01	2	389	2	389	y	0.00	0	184	0	184	n	0.01	4	470	4	470	y	0.01	2	195	2	195	y	0.00	1	306	1	306	n	0.01	3	443	3	443	y	0.00	2	429	2	429	y	0.01	5	411	5	411	y	ENSMUSG00000030869.12	Ndufab1	chr7	protein_coding	NADH:ubiquinone oxidoreductase subunit AB1
known_NIR_16525	chr7	121693272	121695832	-	121692927	121695832	A3SS	ENSMUST00000033157.10	known	0.00	1	572	1	572	n	0.01	4	539	4	539	y	0.00	0	462	0	462	n	0.00	0	524	0	524	n	0.00	0	617	0	617	n	0.01	2	235	2	235	y	0.00	0	763	0	763	n	0.00	1	321	1	321	n	0.01	3	518	3	518	y	0.00	2	761	2	761	y	0.00	1	669	1	669	n	0.00	0	782	0	782	n	ENSMUSG00000030869.12	Ndufab1	chr7	protein_coding	NADH:ubiquinone oxidoreductase subunit AB1
known_NIR_16526	chr7	121695954	121700451	-	121695954	121700878	A5SS	ENSMUST00000033157.10	known	0.00	0	464	0	464	n	0.00	2	426	2	426	y	0.01	2	396	2	396	y	0.01	4	500	4	500	y	0.01	3	571	3	571	y	0.01	3	237	3	237	y	0.01	4	645	4	645	y	0.00	0	307	0	307	n	0.01	2	390	2	390	y	0.00	0	651	0	651	n	0.00	2	542	2	542	y	0.01	3	595	3	595	y	ENSMUSG00000030869.12	Ndufab1	chr7	protein_coding	NADH:ubiquinone oxidoreductase subunit AB1
known_NIR_16527	chr7	121732558	121733392	+	121732404	121733392	A5SS	ENSMUST00000033156.5	known	0.00	0	67	0	67	n	0.00	0	57	0	57	n	0.01	1	84	1	84	n	0.00	0	93	0	93	n	0.00	0	98	0	98	n	0.00	0	41	0	41	n	0.06	5	78	5	78	y	0.00	0	55	0	55	n	0.00	0	51	0	51	n	0.00	0	87	0	87	n	0.00	0	71	0	71	n	0.00	0	106	0	106	n	ENSMUSG00000030868.7	Dctn5	chr7	protein_coding	dynactin 5
known_NIR_16528	chr7	12214953;12215108	12215045;12223497	+	12214953	12223497	cassetteExon	ENSMUST00000098822.10	known	0.08	0.5	6	0;1	6	n	0.03	0.5	15	0;1	15	n	0.07	1.0	14	2;0	14	n	0.05	0.5	9	1;0	9	n	0.23	5.0	17	6;4	17	y	0.09	0.5	5	1;0	5	n	0.00	0.0	16	0;0	16	n	0.50	2.0	2	1;3	2	n	0.17	1.0	5	2;0	5	n	0.03	0.5	17	1;0	17	n	0.11	1.0	8	2;0	8	n	0.18	2.0	9	3;1	9	n	ENSMUSG00000030386.20	Zfp606	chr7	protein_coding	zinc finger protein 606
known_NIR_16529	chr7	122596528	122597748	+	122596528;122596920	122596819;122597748	ES	ENSMUST00000052135.14	known	0.74	14	5.0	14	5;5	y	0.54	7	6.0	7	2;10	y	0.52	19	17.5	19	16;19	y	0.68	15	7.0	15	7;7	y	0.72	18	7.0	18	9;5	y	0.78	14	4.0	14	4;4	y	0.69	10	4.5	10	5;4	y	0.64	15	8.5	15	7;10	y	0.43	9	12.0	9	12;12	y	0.49	10	10.5	10	9;12	y	0.69	11	5.0	11	4;6	y	0.68	24	11.5	24	12;11	y	ENSMUSG00000030779.17	Rbbp6	chr7	protein_coding	retinoblastoma binding protein 6, ubiquitin ligase
known_NIR_16530	chr7	122723938	122751387	+	122723938	122742973	A3SS&ES	ENSMUST00000205514.2	known	0.40	4	6	4	6	y	0.00	0	8	0	8	n	0.07	1	14	1	14	n	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.43	3	4	3	4	n	0.08	1	11	1	11	n	0.27	4	11	4	11	y	0.00	0	15	0	15	n	0.06	1	15	1	15	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	ENSMUSG00000052707.9	Tnrc6a	chr7	protein_coding	trinucleotide repeat containing 6a
known_NIR_16531	chr7	122723938;122743060	122742973;122751387	+	122723938	122751387	cassetteExon	ENSMUST00000206458.2	known	0.67	8.0	4	6;10	4	y	1.00	12.5	0	8;17	0	n	0.95	17.5	1	14;21	1	n	1.00	15.5	0	14;17	0	n	1.00	18.5	0	17;20	0	n	0.75	9.0	3	4;14	3	y	0.92	12.0	1	11;13	1	n	0.73	11.0	4	11;11	4	y	1.00	10.5	0	15;6	0	n	0.93	13.0	1	15;11	1	n	1.00	8.0	0	6;10	0	n	1.00	10.0	0	9;11	0	n	ENSMUSG00000052707.9	Tnrc6a	chr7	protein_coding	trinucleotide repeat containing 6a
known_NIR_16532	chr7	122773542	122776047	+	122773542;122774681	122774649;122776047	ES	ENSMUST00000094053.7	known	0.00	0	32.5	0	27;38	n	0.00	0	14.5	0	11;18	n	0.06	2	34.0	2	23;45	y	0.03	1	32.0	1	29;35	n	0.00	0	27.0	0	13;41	n	0.04	1	23.0	1	14;32	n	0.04	1	25.5	1	18;33	n	0.09	2	20.5	2	13;28	y	0.00	0	25.5	0	18;33	n	0.18	6	27.5	6	19;36	y	0.00	0	17.0	0	14;20	n	0.00	0	30.5	0	21;40	n	ENSMUSG00000052707.9	Tnrc6a	chr7	protein_coding	trinucleotide repeat containing 6a
known_NIR_16533	chr7	122879339	122885721	-	122879339;122884690	122884643;122885721	ES	ENSMUST00000207010.2	known	0.88	11	1.5	11	0;3	n	0.97	14	0.5	14	1;0	n	0.78	16	4.5	16	4;5	y	0.70	7	3.0	7	2;4	y	0.92	17	1.5	17	3;0	n	0.95	10	0.5	10	0;1	n	0.84	16	3.0	16	3;3	y	0.79	11	3.0	11	4;2	y	0.67	6	3.0	6	4;2	y	1.00	15	0.0	15	0;0	n	0.78	9	2.5	9	3;2	y	0.88	19	2.5	19	2;3	y	ENSMUSG00000030766.16	Arhgap17	chr7	protein_coding	Rho GTPase activating protein 17
known_NIR_16534	chr7	122879339;122883048	122883000;122885721	-	122879339	122885721	cassetteExon	ENSMUST00000106442.9	known	0.57	14.5	11	14;15	11	y	0.42	10.0	14	12;8	14	y	0.30	7.0	16	8;6	16	y	0.50	7.0	7	9;5	7	y	0.36	9.5	17	10;9	17	y	0.33	5.0	10	6;4	10	y	0.36	9.0	16	9;9	16	y	0.44	8.5	11	11;6	11	y	0.45	5.0	6	6;4	6	y	0.52	16.5	15	22;11	15	y	0.55	11.0	9	9;13	9	y	0.25	6.5	19	7;6	19	y	ENSMUSG00000030766.16	Arhgap17	chr7	protein_coding	Rho GTPase activating protein 17
known_NIR_16535	chr7	122879339;122883048	122883000;122885721	-	122879339;122884690	122884643;122885721	MXE	ENSMUST00000207010.2	known	0.91	14.5	1.5	14;15	0;3	n	0.95	10.0	0.5	12;8	1;0	n	0.61	7.0	4.5	8;6	4;5	y	0.70	7.0	3.0	9;5	2;4	y	0.86	9.5	1.5	10;9	3;0	n	0.91	5.0	0.5	6;4	0;1	n	0.75	9.0	3.0	9;9	3;3	y	0.74	8.5	3.0	11;6	4;2	y	0.62	5.0	3.0	6;4	4;2	y	1.00	16.5	0.0	22;11	0;0	n	0.81	11.0	2.5	9;13	3;2	y	0.72	6.5	2.5	7;6	2;3	y	ENSMUSG00000030766.16	Arhgap17	chr7	protein_coding	Rho GTPase activating protein 17
known_NIR_16536	chr7	122891428;122893928	122893695;122895633	-	122891428	122895633	cassetteExon	ENSMUST00000207010.2	known	0.87	13.5	2	15;12	2	y	0.84	15.5	3	21;10	3	y	0.89	23.5	3	21;26	3	y	0.65	11.0	6	13;9	6	y	0.69	20.5	9	24;17	9	y	1.00	13.5	0	15;12	0	n	0.44	7.0	9	4;10	9	y	0.93	13.0	1	14;12	1	n	0.78	14.0	4	17;11	4	y	0.72	15.5	6	13;18	6	y	0.60	9.0	6	11;7	6	y	0.74	17.5	6	16;19	6	y	ENSMUSG00000030766.16	Arhgap17	chr7	protein_coding	Rho GTPase activating protein 17
known_NIR_16537	chr7	123061681	123061794	+	123061681	123061797	A3SS	ENSMUST00000033023.10	known	0.22	16	56	16	56	y	0.16	7	37	7	37	y	0.21	6	22	6	22	y	0.23	18	59	18	59	y	0.24	13	41	13	41	y	0.00	0	4	0	4	n	0.22	10	35	10	35	y	0.07	2	26	2	26	y	0.15	14	78	14	78	y	0.22	29	104	29	104	y	0.25	30	89	30	89	y	0.18	11	49	11	49	y	ENSMUSG00000030762.12	Aqp8	chr7	protein_coding	aquaporin 8
known_NIR_16538	chr7	125043964	125054263	+	125043964;125051900	125051400;125054263	ES	ENSMUST00000033010.9	known	0.20	1	4.0	1	6;2	n	0.00	0	2.5	0	2;3	n	0.40	1	1.5	1	3;0	n	0.00	0	7.0	0	5;9	n	0.00	0	5.5	0	3;8	n	0.31	2	4.5	2	4;5	y	0.00	0	5.5	0	2;9	n	0.00	0	2.0	0	1;3	n	0.25	1	3.0	1	3;3	n	0.00	0	6.5	0	7;6	n	0.00	0	0.5	0	1;0	n	0.00	0	8.0	0	10;6	n	ENSMUSG00000030752.9	Kdm8	chr7	protein_coding	lysine (K)-specific demethylase 8
known_NIR_16539	chr7	125163908	125164809	+	125163899	125164809	A5SS	ENSMUST00000033004.8	known	0.00	0	29	0	29	n	0.00	0	17	0	17	n	0.00	0	67	0	67	n	0.00	0	41	0	41	n	0.00	0	69	0	69	n	0.08	2	22	2	22	y	0.00	0	32	0	32	n	0.00	0	39	0	39	n	0.00	0	13	0	13	n	0.00	0	34	0	34	n	0.00	0	28	0	28	n	0.03	1	36	1	36	n	ENSMUSG00000030748.10	Il4ra	chr7	protein_coding	interleukin 4 receptor, alpha
known_NIR_16540	chr7	125170762;125171219	125171106;125172023	+	125170762	125172023	cassetteExon	ENSMUST00000033004.8	known	0.02	0.5	31	0;1	31	n	0.10	2.0	18	2;2	18	y	0.27	14.5	39	14;15	39	y	0.08	2.5	29	1;4	29	n	0.07	4.0	57	4;4	57	y	0.15	5.0	28	1;9	28	n	0.16	7.0	37	4;10	37	y	0.19	10.0	42	13;7	42	y	0.11	2.5	21	2;3	21	y	0.12	6.0	44	4;8	44	y	0.13	4.5	30	1;8	30	n	0.04	1.5	35	0;3	35	n	ENSMUSG00000030748.10	Il4ra	chr7	protein_coding	interleukin 4 receptor, alpha
known_NIR_16541	chr7	125307120;125327536	125327481;125352145	+	125307120	125352145	cassetteExon	ENSMUST00000124223.8	known	1.00	2.0	0	2;2	0	n	1.00	1.0	0	1;1	0	n	1.00	5.5	0	3;8	0	n	1.00	7.5	0	5;10	0	n	0.60	6.0	4	4;8	4	y	0.33	1.0	2	0;2	2	n	0.80	4.0	1	3;5	1	n	0.40	2.0	3	2;2	3	n	0.50	3.0	3	0;6	3	n	0.82	4.5	1	4;5	1	n	1.00	0.5	0	0;1	0	n	1.00	0.5	0	0;1	0	n	ENSMUSG00000032743.16	Katnip	chr7	protein_coding	katanin interacting protein
known_NIR_16542	chr7	125459877	125460787	+	125459877	125464417	A3SS	ENSMUST00000124223.8	known	0.00	0	16	0	16	n	0.00	0	15	0	15	n	0.07	2	28	2	28	y	0.03	1	28	1	28	n	0.04	1	25	1	25	n	0.09	1	10	1	10	n	0.00	0	31	0	31	n	0.00	0	16	0	16	n	0.05	1	18	1	18	n	0.00	0	26	0	26	n	0.00	0	9	0	9	n	0.00	0	29	0	29	n	ENSMUSG00000032743.16	Katnip	chr7	protein_coding	katanin interacting protein
known_NIR_16543	chr7	125466839	125469815	+	125466839;125468021	125467911;125469815	ES	ENSMUST00000124223.8	known	0.00	0	22.5	0	23;22	n	0.12	2	14.5	2	17;12	y	0.00	0	25.0	0	22;28	n	0.00	0	18.0	0	21;15	n	0.03	1	30.5	1	22;39	n	0.00	0	18.0	0	13;23	n	0.10	3	26.5	3	24;29	y	0.00	0	13.0	0	11;15	n	0.00	0	17.0	0	12;22	n	0.00	0	30.5	0	29;32	n	0.00	0	11.5	0	13;10	n	0.08	2	22.0	2	21;23	y	ENSMUSG00000032743.16	Katnip	chr7	protein_coding	katanin interacting protein
known_NIR_16544	chr7	125701562;125702362	125702251;125703876	-	125701562	125703876	cassetteExon	ENSMUST00000168189.8	known	0.03	2.0	61	2;2	61	y	0.01	1.0	70	2;0	70	n	0.04	3.0	65	4;2	65	y	0.06	3.5	59	5;2	59	y	0.01	1.0	86	0;2	86	n	0.02	1.0	49	0;2	49	n	0.02	1.5	81	3;0	81	n	0.00	0.0	45	0;0	45	n	0.01	0.5	36	0;1	36	n	0.02	1.5	93	2;1	93	n	0.06	4.5	76	3;6	76	y	0.00	0.0	93	0;0	93	n	ENSMUSG00000000131.16	Xpo6	chr7	protein_coding	exportin 6
known_NIR_16545	chr7	125702887	125703876	-	125701562	125703876	A3SS	ENSMUST00000168189.8	known	0.03	2	61	2	61	y	0.00	0	70	0	70	n	0.00	0	65	0	65	n	0.00	0	59	0	59	n	0.00	0	86	0	86	n	0.00	0	49	0	49	n	0.08	7	81	7	81	y	0.00	0	45	0	45	n	0.00	0	36	0	36	n	0.00	0	93	0	93	n	0.00	0	76	0	76	n	0.00	0	93	0	93	n	ENSMUSG00000000131.16	Xpo6	chr7	protein_coding	exportin 6
known_NIR_16546	chr7	125703961	125704273	-	125704106	125704273	A3SS	ENSMUST00000168189.8	known	0.00	0	71	0	71	n	0.04	2	54	2	54	y	0.01	1	88	1	88	n	0.03	2	66	2	66	y	0.01	1	91	1	91	n	0.00	0	40	0	40	n	0.00	0	71	0	71	n	0.00	0	42	0	42	n	0.00	0	47	0	47	n	0.00	0	90	0	90	n	0.00	0	78	0	78	n	0.00	0	78	0	78	n	ENSMUSG00000000131.16	Xpo6	chr7	protein_coding	exportin 6
known_NIR_16547	chr7	125728809	125730198	-	125728812	125730198	A3SS	ENSMUST00000168189.8	known	0.03	1	31	1	31	n	0.13	3	20	3	20	y	0.05	3	63	3	63	y	0.08	4	46	4	46	y	0.14	9	56	9	56	y	0.10	3	26	3	26	y	0.07	3	41	3	41	y	0.05	2	39	2	39	y	0.05	2	35	2	35	y	0.09	5	51	5	51	y	0.08	2	22	2	22	y	0.03	1	37	1	37	n	ENSMUSG00000000131.16	Xpo6	chr7	protein_coding	exportin 6
known_NIR_16548	chr7	125748532	125751998	-	125748532	125748676	A5SS&ES	ENSMUST00000170675.8	known	0.93	27	2	27	2	y	0.83	24	5	24	5	y	0.89	34	4	34	4	y	0.88	43	6	43	6	y	0.88	49	7	49	7	y	0.91	29	3	29	3	y	0.86	44	7	44	7	y	1.00	31	0	31	0	n	0.95	19	1	19	1	n	0.91	42	4	42	4	y	1.00	26	0	26	0	n	0.93	37	3	37	3	y	ENSMUSG00000000131.16	Xpo6	chr7	protein_coding	exportin 6
known_NIR_16549	chr7	125748532;125748709	125748676;125751998	-	125748532	125751998	cassetteExon	ENSMUST00000168189.8	known	0.04	1.0	27	2;0	27	n	0.17	5.0	24	5;5	24	y	0.08	3.0	34	4;2	34	y	0.07	3.0	43	6;0	43	n	0.08	4.5	49	7;2	49	y	0.05	1.5	29	3;0	29	n	0.10	5.0	44	7;3	44	y	0.00	0.0	31	0;0	31	n	0.03	0.5	19	1;0	19	n	0.05	2.0	42	4;0	42	n	0.00	0.0	26	0;0	26	n	0.05	2.0	37	3;1	37	n	ENSMUSG00000000131.16	Xpo6	chr7	protein_coding	exportin 6
known_NIR_16550	chr7	125973145	125974239	-	125973245	125974239	A3SS	ENSMUST00000032994.15	known	0.00	0	39	0	39	n	0.04	2	54	2	54	y	0.01	1	73	1	73	n	0.00	0	45	0	45	n	0.04	2	53	2	53	y	0.07	3	38	3	38	y	0.00	0	60	0	60	n	0.03	1	36	1	36	n	0.03	1	34	1	34	n	0.03	2	72	2	72	y	0.02	1	51	1	51	n	0.02	1	50	1	50	n	ENSMUSG00000030741.16	Spns1	chr7	protein_coding	spinster homolog 1
known_NIR_16551	chr7	125973451	125974239	-	125973245	125974239	A3SS	ENSMUST00000032994.15	known	0.03	1	39	1	39	n	0.00	0	54	0	54	n	0.01	1	73	1	73	n	0.04	2	45	2	45	y	0.07	4	53	4	53	y	0.10	4	38	4	38	y	0.05	3	60	3	60	y	0.03	1	36	1	36	n	0.00	0	34	0	34	n	0.01	1	72	1	72	n	0.06	3	51	3	51	y	0.04	2	50	2	50	y	ENSMUSG00000030741.16	Spns1	chr7	protein_coding	spinster homolog 1
known_NIR_16552	chr7	126045298	126046043	-	126045298;126045758	126045717;126046043	ES	ENSMUST00000032974.13	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1.0	0	1;1	n	0.00	4	893.0	4	886;900	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	ENSMUSG00000030730.13	Atp2a1	chr7	protein_coding	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1
known_NIR_16553	chr7	126067221	126067592	-	126067221	126067645	A5SS	ENSMUST00000205440.2	known	0.21	19	73	19	73	y	0.19	13	54	13	54	y	0.12	8	61	8	61	y	0.19	15	64	15	64	y	0.24	18	58	18	58	y	0.19	8	35	8	35	y	0.29	25	62	25	62	y	0.29	16	39	16	39	y	0.30	18	42	18	42	y	0.34	32	63	32	63	y	0.21	15	55	15	55	y	0.19	15	66	15	66	y	ENSMUSG00000030733.11	Sh2b1	chr7	protein_coding	SH2B adaptor protein 1
known_NIR_16554	chr7	126068500;126068742	126068660;126070294	-	126068500	126070294	cassetteExon	ENSMUST00000205440.2	known	0.06	4.0	61	5;3	61	y	0.04	2.5	67	3;2	67	y	0.04	3.0	82	2;4	82	y	0.08	5.5	61	3;8	61	y	0.04	3.5	80	3;4	80	y	0.05	2.5	45	4;1	45	n	0.02	2.0	95	2;2	95	y	0.04	1.5	41	2;1	41	n	0.03	1.5	50	2;1	50	n	0.01	1.5	114	1;2	114	n	0.01	1.0	74	2;0	74	n	0.04	3.0	82	4;2	82	y	ENSMUSG00000030733.11	Sh2b1	chr7	protein_coding	SH2B adaptor protein 1
known_NIR_16555	chr7	126072266	126072651	-	126072266	126074357	A5SS	ENSMUST00000206643.2	known	0.67	4	2	4	2	n	0.92	11	1	11	1	n	0.62	5	3	5	3	n	0.50	3	3	3	3	n	0.88	7	1	7	1	n	0.67	4	2	4	2	n	1.00	4	0	4	0	n	0.75	6	2	6	2	n	0.90	9	1	9	1	n	0.71	12	5	12	5	y	0.62	5	3	5	3	n	0.46	6	7	6	7	y	ENSMUSG00000030733.11	Sh2b1	chr7	protein_coding	SH2B adaptor protein 1
known_NIR_16556	chr7	126072266	126073791	-	126072266	126072651	A5SS&ES	ENSMUST00000205440.2	known	0.56	5	4	5	4	n	0.08	1	11	1	11	n	0.64	9	5	9	5	y	0.57	4	3	4	3	n	0.56	9	7	9	7	y	0.50	4	4	4	4	n	0.85	22	4	22	4	y	0.45	5	6	5	6	y	0.25	3	9	3	9	y	0.14	2	12	2	12	y	0.50	5	5	5	5	y	0.57	8	6	8	6	y	ENSMUSG00000030733.11	Sh2b1	chr7	protein_coding	SH2B adaptor protein 1
known_NIR_16557	chr7	126072266	126074168	-	126072266	126073791	A5SS	ENSMUST00000032978.8	known	0.77	17	5	17	5	y	0.92	11	1	11	1	n	0.31	4	9	4	9	y	0.73	11	4	11	4	y	0.70	21	9	21	9	y	0.71	10	4	10	4	y	0.29	9	22	9	22	y	0.67	10	5	10	5	y	0.79	11	3	11	3	y	0.94	29	2	29	2	y	0.50	5	5	5	5	y	0.69	18	8	18	8	y	ENSMUSG00000030733.11	Sh2b1	chr7	protein_coding	SH2B adaptor protein 1
known_NIR_16558	chr7	126072266	126074168	-	126072266;126072787	126072651;126074168	ES	ENSMUST00000205440.2	known	0.89	17	2.0	17	4;0	n	0.67	11	5.5	11	11;0	n	0.62	4	2.5	4	5;0	n	0.81	11	2.5	11	3;2	y	0.86	21	3.5	21	7;0	n	0.83	10	2.0	10	4;0	n	0.82	9	2.0	9	4;0	n	0.77	10	3.0	10	6;0	n	0.71	11	4.5	11	9;0	n	0.83	29	6.0	29	12;0	n	0.67	5	2.5	5	5;0	n	0.86	18	3.0	18	6;0	n	ENSMUSG00000030733.11	Sh2b1	chr7	protein_coding	SH2B adaptor protein 1
known_NIR_16559	chr7	126072266	126074357	-	126072266	126073791	5pMXE	ENSMUST00000032978.8	known	0.29	2	5	2	5	n	0.50	1	1	1	1	n	0.25	3	9	3	9	y	0.43	3	4	3	4	n	0.10	1	9	1	9	n	0.33	2	4	2	4	n	0.00	0	22	0	22	n	0.29	2	5	2	5	n	0.25	1	3	1	3	n	0.71	5	2	5	2	n	0.38	3	5	3	5	n	0.47	7	8	7	8	y	ENSMUSG00000030733.11	Sh2b1	chr7	protein_coding	SH2B adaptor protein 1
known_NIR_16560	chr7	126072266	126074357	-	126072266	126074168	5pMXE	ENSMUST00000205497.2	known	0.11	2	17	2	17	y	0.08	1	11	1	11	n	0.43	3	4	3	4	n	0.21	3	11	3	11	y	0.05	1	21	1	21	n	0.17	2	10	2	10	y	0.00	0	9	0	9	n	0.17	2	10	2	10	y	0.08	1	11	1	11	n	0.15	5	29	5	29	y	0.38	3	5	3	5	n	0.28	7	18	7	18	y	ENSMUSG00000030733.11	Sh2b1	chr7	protein_coding	SH2B adaptor protein 1
known_NIR_16561	chr7	126086954	126087822	+	126086954;126087598	126087432;126087822	ES	ENSMUST00000098048.6	known	0.00	0	220.0	0	261;179	n	0.00	0	172.5	0	191;154	n	0.03	5	183.5	5	199;168	y	0.00	0	269.0	0	302;236	n	0.03	6	226.5	6	258;195	y	0.00	0	142.0	0	154;130	n	0.01	3	232.0	3	271;193	y	0.00	0	139.5	0	150;129	n	0.00	0	204.0	0	214;194	n	0.00	0	320.0	0	344;296	n	0.00	1	233.0	1	265;201	n	0.00	0	284.0	0	311;257	n	ENSMUSG00000073838.11	Tufm	chr7	protein_coding	Tu translation elongation factor, mitochondrial
known_NIR_16562	chr7	126087926	126088060	+	126087926	126088009	A3SS	ENSMUST00000098048.6	known	0.00	0	292	0	292	n	0.00	0	271	0	271	n	0.03	9	272	9	272	y	0.00	0	344	0	344	n	0.00	0	292	0	292	n	0.00	0	158	0	158	n	0.00	0	347	0	347	n	0.00	0	185	0	185	n	0.00	0	282	0	282	n	0.00	0	466	0	466	n	0.00	0	351	0	351	n	0.00	0	371	0	371	n	ENSMUSG00000073838.11	Tufm	chr7	protein_coding	Tu translation elongation factor, mitochondrial
known_NIR_16563	chr7	126091387;126091657	126091621;126091984	-	126091387	126091984	cassetteExon	ENSMUST00000040202.15	known	0.38	5.0	8	8;2	8	y	0.41	5.5	8	11;0	8	n	0.39	16.0	25	30;2	25	y	0.24	2.5	8	5;0	8	n	0.43	10.5	14	16;5	14	y	0.80	8.0	2	16;0	2	n	0.31	4.0	9	6;2	9	y	0.24	3.5	11	7;0	11	n	0.26	2.5	7	5;0	7	n	0.25	3.0	9	4;2	9	y	0.30	3.5	8	7;0	8	n	0.48	7.5	8	10;5	8	y	ENSMUSG00000032637.16	Atxn2l	chr7	protein_coding	ataxin 2-like
known_NIR_16564	chr7	126095800	126096426	-	126095818	126096426	A3SS	ENSMUST00000040202.15	known	0.78	76	22	76	22	y	0.75	36	12	36	12	y	0.74	95	33	95	33	y	0.86	57	9	57	9	y	0.78	109	30	109	30	y	0.81	54	13	54	13	y	0.81	71	17	71	17	y	0.87	41	6	41	6	y	0.93	65	5	65	5	y	0.82	64	14	64	14	y	0.86	48	8	48	8	y	0.71	55	23	55	23	y	ENSMUSG00000032637.16	Atxn2l	chr7	protein_coding	ataxin 2-like
known_NIR_16565	chr7	126100630	126101125	-	126100630	126101468	A5SS	ENSMUST00000167759.8	known	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.45	5	6	5	6	y	0.00	0	6	0	6	n	0.24	4	13	4	13	y	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.15	2	11	2	11	y	-	-	-	-	-	-	0.00	0	6	0	6	n	ENSMUSG00000032637.16	Atxn2l	chr7	protein_coding	ataxin 2-like
known_NIR_16566	chr7	126100630	126101125	-	126100630	126102072	A5SS	ENSMUST00000040202.15	known	0.00	0	49	0	49	n	0.00	0	32	0	32	n	0.06	5	85	5	85	y	0.00	0	51	0	51	n	0.05	4	74	4	74	y	0.00	0	38	0	38	n	0.02	1	48	1	48	n	0.00	0	44	0	44	n	0.00	0	49	0	49	n	0.04	2	50	2	50	y	0.00	0	30	0	30	n	0.00	0	56	0	56	n	ENSMUSG00000032637.16	Atxn2l	chr7	protein_coding	ataxin 2-like
known_NIR_16567	chr7	126100630	126101402	-	126100630	126101468	A5SS	ENSMUST00000167759.8	known	0.11	1	8	1	8	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.13	2	13	2	13	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.27	3	8	3	8	y	0.00	0	8	0	8	n	0.00	0	11	0	11	n	1.00	1	0	1	0	n	0.00	0	6	0	6	n	ENSMUSG00000032637.16	Atxn2l	chr7	protein_coding	ataxin 2-like
known_NIR_16568	chr7	126100630	126101402	-	126100630	126102072	A5SS	ENSMUST00000040202.15	known	0.02	1	49	1	49	n	0.00	0	32	0	32	n	0.01	1	85	1	85	n	0.00	0	51	0	51	n	0.03	2	74	2	74	y	0.00	0	38	0	38	n	0.00	0	48	0	48	n	0.06	3	44	3	44	y	0.00	0	49	0	49	n	0.00	0	50	0	50	n	0.03	1	30	1	30	n	0.00	0	56	0	56	n	ENSMUSG00000032637.16	Atxn2l	chr7	protein_coding	ataxin 2-like
known_NIR_16569	chr7	126100630	126101468	-	126100630	126102072	A5SS	ENSMUST00000040202.15	known	0.14	8	49	8	49	y	0.11	4	32	4	32	y	0.07	6	85	6	85	y	0.11	6	51	6	51	y	0.15	13	74	13	74	y	0.07	3	38	3	38	y	0.09	5	48	5	48	y	0.15	8	44	8	44	y	0.14	8	49	8	49	y	0.18	11	50	11	50	y	0.00	0	30	0	30	n	0.10	6	56	6	56	y	ENSMUSG00000032637.16	Atxn2l	chr7	protein_coding	ataxin 2-like
known_NIR_16570	chr7	126182272	126182475	-	126182268	126182475	A3SS	ENSMUST00000084589.11	known	0.10	1	9	1	9	n	0.00	0	6	0	6	n	0.23	3	10	3	10	y	0.33	3	6	3	6	n	0.18	2	9	2	9	y	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.14	1	6	1	6	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.20	3	12	3	12	y	0.25	2	6	2	6	n	ENSMUSG00000030720.17	Cln3	chr7	protein_coding	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)
known_NIR_16571	chr7	126270832	126270906	+	126270839	126270906	A5SS	ENSMUST00000032956.10	known	0.00	0	30	0	30	n	0.00	0	48	0	48	n	0.00	0	65	0	65	n	0.00	0	44	0	44	n	0.04	3	79	3	79	y	0.00	0	29	0	29	n	0.00	0	72	0	72	n	0.00	0	30	0	30	n	0.00	0	51	0	51	n	0.04	2	54	2	54	y	0.00	0	84	0	84	n	0.00	0	73	0	73	n	ENSMUSG00000030714.15	Sgf29	chr7	protein_coding	SAGA complex associated factor 29
known_NIR_16572	chr7	126273623	126274221	-	126273569	126274221	A3SS	ENSMUST00000106373.9	known	0.03	29	1110	29	1110	y	0.03	21	749	21	749	y	0.00	0	165	0	165	n	0.02	20	1075	20	1075	y	0.02	17	708	17	708	y	0.03	3	91	3	91	y	0.02	13	767	13	767	y	0.01	1	153	1	153	n	0.02	10	646	10	646	y	0.02	16	749	16	749	y	0.02	17	941	17	941	y	0.02	36	1481	36	1481	y	ENSMUSG00000030711.17	Sult1a1	chr7	protein_coding	sulfotransferase family 1A, phenol-preferring, member 1
known_NIR_16573	chr7	126291831	126294597	-	126291831;126291976	126291925;126294597	ES	ENSMUST00000144897.2	known	0.18	3	14.0	3	9;19	y	0.26	3	8.5	3	9;8	y	0.00	0	5.5	0	8;3	n	0.24	4	13.0	4	11;15	y	0.31	5	11.0	5	11;11	y	0.00	0	6.0	0	6;6	n	0.26	6	17.5	6	20;15	y	0.20	2	8.0	2	9;7	y	0.15	2	11.0	2	10;12	y	0.26	7	20.0	7	19;21	y	0.11	3	23.5	3	27;20	y	0.12	2	15.0	2	16;14	y	ENSMUSG00000059772.13	Slx1b	chr7	protein_coding	SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)
known_NIR_16574	chr7	126302367	126303824	-	126302346	126303824	A3SS	ENSMUST00000032949.14	known	0.00	0	10	0	10	n	0.08	1	11	1	11	n	0.00	0	21	0	21	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.12	2	15	2	15	y	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	21	0	21	n	ENSMUSG00000030707.16	Coro1a	chr7	protein_coding	coronin, actin binding protein 1A
known_NIR_16575	chr7	12631870	12640161	+	12631870;12638012	12637528;12640161	ES	ENSMUST00000055528.11	known	0.86	3	0.5	3	0;1	n	0.67	3	1.5	3	0;3	n	0.50	3	3.0	3	0;6	n	0.62	5	3.0	5	3;3	y	0.00	0	2.0	0	0;4	n	0.20	1	4.0	1	1;7	n	0.64	7	4.0	7	4;4	y	0.57	4	3.0	4	0;6	n	0.67	3	1.5	3	2;1	n	0.67	3	1.5	3	0;3	n	0.00	0	1.0	0	1;1	n	0.50	2	2.0	2	0;4	n	ENSMUSG00000054715.12	Zscan22	chr7	protein_coding	zinc finger and SCAN domain containing 22
known_NIR_16576	chr7	12631870	12640161	+	12631907	12640161	A5SS	ENSMUST00000117189.2	known	0.50	3	3	3	3	n	1.00	3	0	3	0	n	0.33	3	6	3	6	n	0.83	5	1	5	1	n	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.64	7	4	7	4	y	0.50	4	4	4	4	n	1.00	3	0	3	0	n	0.33	3	6	3	6	n	0.00	0	2	0	2	n	0.50	2	2	2	2	n	ENSMUSG00000054715.12	Zscan22	chr7	protein_coding	zinc finger and SCAN domain containing 22
known_NIR_16577	chr7	12631870	12640161	+	12638012	12640161	A5SS&ES	ENSMUST00000120809.2	known	0.75	3	1	3	1	n	0.50	3	3	3	3	n	0.33	3	6	3	6	n	0.62	5	3	5	3	n	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.64	7	4	7	4	y	0.40	4	6	4	6	y	0.75	3	1	3	1	n	0.50	3	3	3	3	n	0.00	0	1	0	1	n	0.33	2	4	2	4	n	ENSMUSG00000054715.12	Zscan22	chr7	protein_coding	zinc finger and SCAN domain containing 22
known_NIR_16578	chr7	12631907	12640161	+	12638012	12640161	A5SS&ES	ENSMUST00000055528.11	known	0.75	3	1	3	1	n	0.00	0	3	0	3	n	0.50	6	6	6	6	y	0.25	1	3	1	3	n	0.56	5	4	5	4	n	0.30	3	7	3	7	y	0.50	4	4	4	4	n	0.40	4	6	4	6	y	0.00	0	1	0	1	n	0.67	6	3	6	3	n	0.67	2	1	2	1	n	0.33	2	4	2	4	n	ENSMUSG00000054715.12	Zscan22	chr7	protein_coding	zinc finger and SCAN domain containing 22
known_NIR_16579	chr7	126376275	126377042	+	126376275	126376678	A3SS&ES	ENSMUST00000106359.2	known	0.23	3	10	3	10	y	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.08	2	23	2	23	y	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.27	3	8	3	8	y	0.00	0	12	0	12	n	0.29	5	12	5	12	y	0.57	4	3	4	3	n	0.00	0	11	0	11	n	ENSMUSG00000042675.16	Ypel3	chr7	protein_coding	yippee like 3
known_NIR_16580	chr7	126376275	126377042	+	126376275	126376943	A3SS	ENSMUST00000038614.12	known	0.04	3	69	3	69	y	0.00	0	85	0	85	n	0.00	0	51	0	51	n	0.00	0	104	0	104	n	0.02	2	109	2	109	y	0.00	0	46	0	46	n	0.00	0	133	0	133	n	0.06	3	50	3	50	y	0.00	0	76	0	76	n	0.03	5	149	5	149	y	0.04	4	91	4	91	y	0.00	0	116	0	116	n	ENSMUSG00000042675.16	Ypel3	chr7	protein_coding	yippee like 3
known_NIR_16581	chr7	126376275;126376789	126376678;126376943	+	126376275	126376943	cassetteExon	ENSMUST00000038614.12	known	0.13	10.5	69	10;11	69	y	0.16	16.0	85	10;22	85	y	0.11	6.5	51	4;9	51	y	0.08	8.5	104	9;8	104	y	0.20	26.5	109	23;30	109	y	0.08	4.0	46	6;2	46	y	0.09	13.0	133	13;13	133	y	0.16	9.5	50	8;11	50	y	0.14	12.5	76	12;13	76	y	0.09	14.0	149	12;16	149	y	0.09	9.0	91	3;15	91	y	0.09	11.0	116	11;11	116	y	ENSMUSG00000042675.16	Ypel3	chr7	protein_coding	yippee like 3
known_NIR_16582	chr7	126376375	126376943	+	126376275	126376943	A5SS	ENSMUST00000038614.12	known	0.01	1	69	1	69	n	0.02	2	85	2	85	y	0.00	0	51	0	51	n	0.02	2	104	2	104	y	0.02	2	109	2	109	y	0.02	1	46	1	46	n	0.01	1	133	1	133	n	0.00	0	50	0	50	n	0.03	2	76	2	76	y	0.03	4	149	4	149	y	0.01	1	91	1	91	n	0.03	3	116	3	116	y	ENSMUSG00000042675.16	Ypel3	chr7	protein_coding	yippee like 3
known_NIR_16583	chr7	126376789	126376943	+	126376375	126376943	A5SS	ENSMUST00000170882.8	known	0.92	11	1	11	1	n	0.92	22	2	22	2	y	1.00	9	0	9	0	n	0.80	8	2	8	2	y	0.94	30	2	30	2	y	0.67	2	1	2	1	n	0.93	13	1	13	1	n	1.00	11	0	11	0	n	0.87	13	2	13	2	y	0.80	16	4	16	4	y	0.94	15	1	15	1	n	0.79	11	3	11	3	y	ENSMUSG00000042675.16	Ypel3	chr7	protein_coding	yippee like 3
known_NIR_16584	chr7	126377125	126377478	+	126377125	126377226	3pMXE	ENSMUST00000106359.2	known	0.04	7	182	7	182	y	0.10	24	213	24	213	y	0.07	9	121	9	121	y	0.13	26	180	26	180	y	0.08	19	227	19	227	y	0.11	11	86	11	86	y	0.05	15	273	15	273	y	0.09	11	115	11	115	y	0.06	12	174	12	174	y	0.03	9	306	9	306	y	0.03	8	221	8	221	y	0.06	16	238	16	238	y	ENSMUSG00000042675.16	Ypel3	chr7	protein_coding	yippee like 3
known_NIR_16585	chr7	126377125	126377478	+	126377125;126377269	126377226;126377478	ES	ENSMUST00000038614.12	known	0.04	7	170.0	7	182;158	y	0.11	24	196.0	24	213;179	y	0.08	9	110.0	9	121;99	y	0.13	26	168.5	26	180;157	y	0.08	19	212.0	19	227;197	y	0.12	11	83.0	11	86;80	y	0.05	15	262.0	15	273;251	y	0.09	11	105.5	11	115;96	y	0.07	12	165.5	12	174;157	y	0.03	9	286.0	9	306;266	y	0.04	8	200.5	8	221;180	y	0.07	16	214.5	16	238;191	y	ENSMUSG00000042675.16	Ypel3	chr7	protein_coding	yippee like 3
known_NIR_16586	chr7	126388306	126391233	-	126388247	126391233	A3SS	ENSMUST00000032936.8	known	0.00	0	64	0	64	n	0.00	0	76	0	76	n	0.00	0	105	0	105	n	0.01	1	103	1	103	n	0.00	0	128	0	128	n	0.02	1	48	1	48	n	0.01	1	116	1	116	n	0.04	2	50	2	50	y	0.01	1	70	1	70	n	0.00	0	111	0	111	n	0.02	2	110	2	110	y	0.02	2	110	2	110	y	ENSMUSG00000030697.8	Ppp4c	chr7	protein_coding	protein phosphatase 4, catalytic subunit
known_NIR_16587	chr7	126396948	126397146	-	126396948	126399460	A5SS	ENSMUST00000106348.8	known	0.64	7	4	7	4	y	0.50	5	5	5	5	y	0.58	19	14	19	14	y	0.38	3	5	3	5	n	0.60	6	4	6	4	y	0.38	3	5	3	5	n	0.41	12	17	12	17	y	0.80	4	1	4	1	n	1.00	2	0	2	0	n	0.12	1	7	1	7	n	1.00	8	0	8	0	n	0.50	3	3	3	3	n	ENSMUSG00000030695.17	Aldoa	chr7	protein_coding	aldolase A, fructose-bisphosphate
known_NIR_16588	chr7	126396948	126398217	-	126396948	126397146	A5SS&ES	ENSMUST00000133514.8	known	0.95	130	7	130	7	y	0.96	123	5	123	5	y	0.94	320	19	320	19	y	0.98	136	3	136	3	y	0.96	153	6	153	6	y	0.96	79	3	79	3	y	0.95	245	12	245	12	y	0.94	61	4	61	4	y	0.98	100	2	100	2	y	0.99	146	1	146	1	n	0.95	154	8	154	8	y	0.98	163	3	163	3	y	ENSMUSG00000030695.17	Aldoa	chr7	protein_coding	aldolase A, fructose-bisphosphate
known_NIR_16589	chr7	126396948	126399174	-	126396948	126398217	5pMXE	ENSMUST00000032934.12	known	0.05	7	130	7	130	y	0.13	19	123	19	123	y	0.24	103	320	103	320	y	0.07	11	136	11	136	y	0.15	27	153	27	153	y	0.17	16	79	16	79	y	0.53	274	245	274	245	y	0.10	7	61	7	61	y	0.10	11	100	11	100	y	0.10	17	146	17	146	y	0.07	12	154	12	154	y	0.17	33	163	33	163	y	ENSMUSG00000030695.17	Aldoa	chr7	protein_coding	aldolase A, fructose-bisphosphate
known_NIR_16590	chr7	126396948	126399174	-	126396948	126399460	A5SS	ENSMUST00000106348.8	known	0.64	7	4	7	4	y	0.79	19	5	19	5	y	0.88	103	14	103	14	y	0.69	11	5	11	5	y	0.87	27	4	27	4	y	0.76	16	5	16	5	y	0.94	274	17	274	17	y	0.88	7	1	7	1	n	1.00	11	0	11	0	n	0.71	17	7	17	7	y	1.00	12	0	12	0	n	0.92	33	3	33	3	y	ENSMUSG00000030695.17	Aldoa	chr7	protein_coding	aldolase A, fructose-bisphosphate
known_NIR_16591	chr7	126396948	126399460	-	126396948	126398217	5pMXE	ENSMUST00000032934.12	known	0.03	4	130	4	130	y	0.04	5	123	5	123	y	0.04	14	320	14	320	y	0.04	5	136	5	136	y	0.03	4	153	4	153	y	0.06	5	79	5	79	y	0.06	17	245	17	245	y	0.02	1	61	1	61	n	0.00	0	100	0	100	n	0.05	7	146	7	146	y	0.00	0	154	0	154	n	0.02	3	163	3	163	y	ENSMUSG00000030695.17	Aldoa	chr7	protein_coding	aldolase A, fructose-bisphosphate
known_NIR_16592	chr7	126396948;126397298	126397146;126398217	-	126396948	126398217	cassetteExon	ENSMUST00000032934.12	known	0.03	4.5	130	7;2	130	y	0.02	2.5	123	5;0	123	n	0.04	12.0	320	19;5	320	y	0.01	1.5	136	3;0	136	n	0.03	5.0	153	6;4	153	y	0.04	3.0	79	3;3	79	y	0.03	8.5	245	12;5	245	y	0.03	2.0	61	4;0	61	n	0.01	1.0	100	2;0	100	n	0.01	1.0	146	1;1	146	n	0.03	4.5	154	8;1	154	n	0.02	3.5	163	3;4	163	y	ENSMUSG00000030695.17	Aldoa	chr7	protein_coding	aldolase A, fructose-bisphosphate
known_NIR_16593	chr7	126396948;126397298	126397146;126399174	-	126396948	126399174	cassetteExon	ENSMUST00000151137.8	known	0.33	3.5	7	7;0	7	n	0.12	2.5	19	5;0	19	n	0.09	10.5	103	19;2	103	y	0.12	1.5	11	3;0	11	n	0.10	3.0	27	6;0	27	n	0.09	1.5	16	3;0	16	n	0.02	6.5	274	12;1	274	n	0.22	2.0	7	4;0	7	n	0.08	1.0	11	2;0	11	n	0.03	0.5	17	1;0	17	n	0.25	4.0	12	8;0	12	n	0.04	1.5	33	3;0	33	n	ENSMUSG00000030695.17	Aldoa	chr7	protein_coding	aldolase A, fructose-bisphosphate
known_NIR_16594	chr7	126452163;126452752	126452661;126456398	-	126452163	126456398	cassetteExon	ENSMUST00000050833.14	known	0.13	4.5	31	2;7	31	y	0.08	1.5	18	2;1	18	n	0.04	1.5	34	2;1	34	n	0.06	1.0	16	0;2	16	n	0.15	4.5	26	3;6	26	y	0.14	2.0	12	3;1	12	n	0.04	1.0	24	1;1	24	n	0.07	1.5	21	3;0	21	n	0.11	2.0	17	3;1	17	n	0.07	1.5	20	1;2	20	n	0.10	2.5	23	3;2	23	y	0.07	2.5	35	5;0	35	n	ENSMUSG00000030689.16	Ino80e	chr7	protein_coding	INO80 complex subunit E
known_NIR_16595	chr7	126456463	126456848	-	126456514	126456848	A3SS	ENSMUST00000205619.2	known	0.00	0	14	0	14	n	0.07	1	13	1	13	n	0.00	0	24	0	24	n	0.07	1	13	1	13	n	0.00	0	15	0	15	n	0.00	0	8	0	8	n	0.12	2	14	2	14	y	0.22	2	7	2	7	n	0.08	1	11	1	11	n	0.08	1	12	1	12	n	0.00	0	14	0	14	n	0.06	1	17	1	17	n	ENSMUSG00000030689.16	Ino80e	chr7	protein_coding	INO80 complex subunit E
known_NIR_16596	chr7	126456894	126457046	-	126456959	126457046	A3SS	ENSMUST00000205619.2	known	0.09	2	20	2	20	y	0.09	2	21	2	21	y	0.13	4	26	4	26	y	0.00	0	22	0	22	n	0.10	3	28	3	28	y	0.00	0	12	0	12	n	0.00	0	23	0	23	n	0.05	1	19	1	19	n	0.00	0	12	0	12	n	0.08	2	23	2	23	y	0.03	1	28	1	28	n	0.00	0	22	0	22	n	ENSMUSG00000030689.16	Ino80e	chr7	protein_coding	INO80 complex subunit E
known_NIR_16597	chr7	126457124	126460648	-	126457124	126460412	5pMXE	ENSMUST00000205619.2	known	0.00	0	25	0	25	n	0.00	0	30	0	30	n	0.07	3	40	3	40	y	0.03	1	30	1	30	n	0.00	0	47	0	47	n	0.00	0	17	0	17	n	0.00	0	32	0	32	n	0.03	1	32	1	32	n	0.00	0	13	0	13	n	0.04	2	47	2	47	y	0.00	0	31	0	31	n	0.00	0	27	0	27	n	ENSMUSG00000030689.16	Ino80e	chr7	protein_coding	INO80 complex subunit E
known_NIR_16598	chr7	126457124	126460648	-	126457124;126460464	126460412;126460648	ES	ENSMUST00000106342.8	known	0.00	0	26.0	0	25;27	n	0.00	0	30.0	0	30;30	n	0.07	3	39.5	3	40;39	y	0.03	1	37.0	1	30;44	n	0.00	0	51.0	0	47;55	n	0.00	0	17.0	0	17;17	n	0.00	0	27.5	0	32;23	n	0.03	1	29.5	1	32;27	n	0.00	0	18.0	0	13;23	n	0.04	2	48.0	2	47;49	y	0.00	0	35.0	0	31;39	n	0.00	0	27.5	0	27;28	n	ENSMUSG00000030689.16	Ino80e	chr7	protein_coding	INO80 complex subunit E
known_NIR_16599	chr7	126457124	126460648	-	126460464	126460648	A3SS	ENSMUST00000154881.8	known	0.00	0	27	0	27	n	0.00	0	30	0	30	n	0.07	3	39	3	39	y	0.02	1	44	1	44	n	0.00	0	55	0	55	n	0.00	0	17	0	17	n	0.00	0	23	0	23	n	0.04	1	27	1	27	n	0.00	0	23	0	23	n	0.04	2	49	2	49	y	0.00	0	39	0	39	n	0.00	0	28	0	28	n	ENSMUSG00000030689.16	Ino80e	chr7	protein_coding	INO80 complex subunit E
known_NIR_16600	chr7	126485487	126490775	-	126485487	126488063	5pMXE	ENSMUST00000137875.8	known	0.01	1	172	1	172	n	0.01	2	169	2	169	y	0.02	2	121	2	121	y	0.00	0	124	0	124	n	0.01	1	170	1	170	n	0.00	0	75	0	75	n	0.02	4	160	4	160	y	0.00	0	102	0	102	n	0.04	5	128	5	128	y	0.02	3	193	3	193	y	0.00	0	163	0	163	n	0.00	0	200	0	200	n	ENSMUSG00000060538.15	Tmem219	chr7	protein_coding	transmembrane protein 219
known_NIR_16601	chr7	126485487	126490775	-	126488232	126490775	3pMXE	ENSMUST00000121612.4	known	0.01	1	177	1	177	n	0.01	2	159	2	159	y	0.02	2	112	2	112	y	0.00	0	150	0	150	n	0.00	1	232	1	232	n	0.00	0	104	0	104	n	0.02	4	176	4	176	y	0.00	0	101	0	101	n	0.04	5	136	5	136	y	0.01	3	238	3	238	y	0.00	0	219	0	219	n	0.00	0	193	0	193	n	ENSMUSG00000060538.15	Tmem219	chr7	protein_coding	transmembrane protein 219
known_NIR_16602	chr7	126485487;126488232	126488063;126490775	-	126485487	126490775	cassetteExon	ENSMUST00000154174.2	known	0.99	174.5	1	172;177	1	n	0.99	164.0	2	169;159	2	y	0.98	116.5	2	121;112	2	y	1.00	137.0	0	124;150	0	n	1.00	201.0	1	170;232	1	n	1.00	89.5	0	75;104	0	n	0.98	168.0	4	160;176	4	y	1.00	101.5	0	102;101	0	n	0.96	132.0	5	128;136	5	y	0.99	215.5	3	193;238	3	y	1.00	191.0	0	163;219	0	n	1.00	196.5	0	200;193	0	n	ENSMUSG00000060538.15	Tmem219	chr7	protein_coding	transmembrane protein 219
known_NIR_16603	chr7	126496110	126521982	-	126496110	126496198	5pMXE	ENSMUST00000120007.8	known	0.02	3	126	3	126	y	0.02	2	114	2	114	y	0.02	2	104	2	104	y	0.01	2	133	2	133	y	0.00	0	158	0	158	n	0.05	4	81	4	81	y	0.01	1	170	1	170	n	0.00	0	98	0	98	n	0.00	0	124	0	124	n	0.01	1	186	1	186	n	0.00	0	145	0	145	n	0.01	3	218	3	218	y	ENSMUSG00000060538.15	Tmem219	chr7	protein_coding	transmembrane protein 219
known_NIR_16604	chr7	126496396	126497969	-	126496396	126497396	5pMXE	ENSMUST00000121532.8	known	1.00	20	0	20	0	n	0.84	16	3	16	3	y	0.85	17	3	17	3	y	1.00	24	0	24	0	n	0.83	29	6	29	6	y	0.93	13	1	13	1	n	0.94	31	2	31	2	y	0.65	11	6	11	6	y	0.89	16	2	16	2	y	0.92	23	2	23	2	y	0.85	29	5	29	5	y	0.95	35	2	35	2	y	ENSMUSG00000060538.15	Tmem219	chr7	protein_coding	transmembrane protein 219
known_NIR_16605	chr7	126496399	126497396	-	126496396	126497396	A3SS	ENSMUST00000121532.8	known	1.00	1	0	1	0	n	0.50	3	3	3	3	n	0.73	8	3	8	3	y	1.00	3	0	3	0	n	0.45	5	6	5	6	y	0.67	2	1	2	1	n	0.33	1	2	1	2	n	0.45	5	6	5	6	y	0.60	3	2	3	2	n	0.67	4	2	4	2	n	0.50	5	5	5	5	y	0.60	3	2	3	2	n	ENSMUSG00000060538.15	Tmem219	chr7	protein_coding	transmembrane protein 219
known_NIR_16606	chr7	126496399	126497969	-	126496396	126497969	A3SS	ENSMUST00000119781.8	known	0.77	67	20	67	20	y	0.79	59	16	59	16	y	0.78	59	17	59	17	y	0.71	59	24	59	24	y	0.74	81	29	81	29	y	0.76	41	13	41	13	y	0.74	88	31	88	31	y	0.78	39	11	39	11	y	0.77	54	16	54	16	y	0.83	110	23	110	23	y	0.77	95	29	95	29	y	0.76	111	35	111	35	y	ENSMUSG00000060538.15	Tmem219	chr7	protein_coding	transmembrane protein 219
known_NIR_16607	chr7	126496399	126497969	-	126496399	126497396	5pMXE	ENSMUST00000032926.12	known	0.99	67	1	67	1	n	0.95	59	3	59	3	y	0.88	59	8	59	8	y	0.95	59	3	59	3	y	0.94	81	5	81	5	y	0.95	41	2	41	2	y	0.99	88	1	88	1	n	0.89	39	5	39	5	y	0.95	54	3	54	3	y	0.96	110	4	110	4	y	0.95	95	5	95	5	y	0.97	111	3	111	3	y	ENSMUSG00000060538.15	Tmem219	chr7	protein_coding	transmembrane protein 219
known_NIR_16608	chr7	126498095	126521982	-	126496110	126521982	A3SS	ENSMUST00000121612.4	known	0.97	100	3	100	3	y	0.97	75	2	75	2	y	0.97	67	2	67	2	y	0.98	99	2	99	2	y	1.00	140	0	140	0	n	0.94	67	4	67	4	y	0.99	106	1	106	1	n	1.00	69	0	69	0	n	1.00	84	0	84	0	n	0.99	129	1	129	1	n	1.00	133	0	133	0	n	0.98	169	3	169	3	y	ENSMUSG00000060538.15	Tmem219	chr7	protein_coding	transmembrane protein 219
known_NIR_16609	chr7	12656315	12656900	+	12656349	12656900	A5SS	ENSMUST00000108539.8	known	0.99	769	6	769	6	y	0.99	761	11	761	11	y	0.97	1163	35	1163	35	y	0.98	709	13	709	13	y	0.98	1239	25	1239	25	y	0.99	703	10	703	10	y	0.99	1077	10	1077	10	y	0.99	579	7	579	7	y	0.98	656	14	656	14	y	0.98	926	16	926	16	y	0.98	830	14	830	14	y	0.98	921	21	921	21	y	ENSMUSG00000012848.16	Rps5	chr7	protein_coding	ribosomal protein S5
known_NIR_16610	chr7	12656447	12656900	+	12656315	12656900	A5SS	ENSMUST00000004554.14	known	0.00	1	769	1	769	n	0.00	2	761	2	761	y	0.01	6	1163	6	1163	y	0.00	0	709	0	709	n	0.00	5	1239	5	1239	y	0.01	4	703	4	703	y	0.00	3	1077	3	1077	y	0.00	0	579	0	579	n	0.00	3	656	3	656	y	0.00	1	926	1	926	n	0.00	1	830	1	830	n	0.00	4	921	4	921	y	ENSMUSG00000012848.16	Rps5	chr7	protein_coding	ribosomal protein S5
known_NIR_16611	chr7	12656447	12656900	+	12656349	12656900	A5SS	ENSMUST00000108539.8	known	0.14	1	6	1	6	n	0.15	2	11	2	11	y	0.15	6	35	6	35	y	0.00	0	13	0	13	n	0.17	5	25	5	25	y	0.29	4	10	4	10	y	0.23	3	10	3	10	y	0.00	0	7	0	7	n	0.18	3	14	3	14	y	0.06	1	16	1	16	n	0.07	1	14	1	14	n	0.16	4	21	4	21	y	ENSMUSG00000012848.16	Rps5	chr7	protein_coding	ribosomal protein S5
known_NIR_16612	chr7	12656475	12656900	+	12656315	12656900	A5SS	ENSMUST00000004554.14	known	0.00	1	769	1	769	n	0.00	1	761	1	761	n	0.00	3	1163	3	1163	y	0.00	2	709	2	709	y	0.00	1	1239	1	1239	n	0.00	0	703	0	703	n	0.00	0	1077	0	1077	n	0.00	2	579	2	579	y	0.00	0	656	0	656	n	0.00	2	926	2	926	y	0.00	4	830	4	830	y	0.00	2	921	2	921	y	ENSMUSG00000012848.16	Rps5	chr7	protein_coding	ribosomal protein S5
known_NIR_16613	chr7	12656475	12656900	+	12656349	12656900	A5SS	ENSMUST00000108539.8	known	0.14	1	6	1	6	n	0.08	1	11	1	11	n	0.08	3	35	3	35	y	0.13	2	13	2	13	y	0.04	1	25	1	25	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.22	2	7	2	7	n	0.00	0	14	0	14	n	0.11	2	16	2	16	y	0.22	4	14	4	14	y	0.09	2	21	2	21	y	ENSMUSG00000012848.16	Rps5	chr7	protein_coding	ribosomal protein S5
known_NIR_16614	chr7	126575978	126576175	+	126575978	126576090	A3SS	ENSMUST00000032920.5	known	0.00	0	150	0	150	n	0.02	2	120	2	120	y	0.00	0	186	0	186	n	0.01	2	161	2	161	y	0.00	1	215	1	215	n	0.00	0	109	0	109	n	0.00	1	225	1	225	n	0.01	1	111	1	111	n	0.00	0	120	0	120	n	0.01	1	175	1	175	n	0.00	0	128	0	128	n	0.01	1	169	1	169	n	ENSMUSG00000030682.5	Cdipt	chr7	protein_coding	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)
known_NIR_16615	chr7	126578168	126578430	+	126578168	126578494	A3SS	ENSMUST00000032920.5	known	0.00	0	143	0	143	n	0.00	0	133	0	133	n	0.01	2	182	2	182	y	0.00	0	135	0	135	n	0.01	1	195	1	195	n	0.00	0	115	0	115	n	0.02	3	160	3	160	y	0.01	1	98	1	98	n	0.00	0	111	0	111	n	0.01	2	146	2	146	y	0.00	0	150	0	150	n	0.00	0	137	0	137	n	ENSMUSG00000030682.5	Cdipt	chr7	protein_coding	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)
known_NIR_16616	chr7	126578168	126578477	+	126578168	126578494	A3SS	ENSMUST00000032920.5	known	0.01	2	143	2	143	y	0.02	3	133	3	133	y	0.01	1	182	1	182	n	0.02	3	135	3	135	y	0.00	0	195	0	195	n	0.02	2	115	2	115	y	0.00	0	160	0	160	n	0.00	0	98	0	98	n	0.00	0	111	0	111	n	0.00	0	146	0	146	n	0.00	0	150	0	150	n	0.00	0	137	0	137	n	ENSMUSG00000030682.5	Cdipt	chr7	protein_coding	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)
known_NIR_16617	chr7	126615454	126615730	-	126615454	126615615	5pMXE	ENSMUST00000172958.7	known	0.01	1	100	1	100	n	0.05	6	121	6	121	y	0.05	6	114	6	114	y	0.08	9	105	9	105	y	0.04	6	130	6	130	y	0.06	3	48	3	48	y	0.06	7	107	7	107	y	0.00	0	61	0	61	n	0.07	6	76	6	76	y	0.07	9	115	9	115	y	0.06	7	101	7	101	y	0.05	4	82	4	82	y	ENSMUSG00000092534.9	Pagr1b	chr7	protein_coding	PAXIP1 associated glutamate rich protein 1B
known_NIR_16618	chr7	126622340	126623616	-	126622340;126622878	126622654;126623616	ES	ENSMUST00000205568.2	known	0.74	109	37.5	109	17;58	y	0.71	87	35.0	87	11;59	y	0.82	146	32.5	146	11;54	y	0.78	102	28.5	102	11;46	y	0.71	129	53.5	129	14;93	y	0.78	53	15.0	53	7;23	y	0.75	113	38.5	113	12;65	y	0.70	46	19.5	46	5;34	y	0.74	66	23.5	66	16;31	y	0.65	95	51.5	95	23;80	y	0.76	80	25.5	80	7;44	y	0.75	115	39.0	115	10;68	y	ENSMUSG00000030678.8	Maz	chr7	protein_coding	MYC-associated zinc finger protein (purine-binding transcription factor)
known_NIR_16619	chr7	126708416;126717489	126717325;126721145	-	126708416	126721145	cassetteExon	ENSMUST00000032912.6	known	0.01	3.5	345	5;2	345	y	0.00	0.5	256	1;0	256	n	0.00	0.0	224	0;0	224	n	0.00	0.5	362	1;0	362	n	0.00	2.0	434	2;2	434	y	0.00	0.0	167	0;0	167	n	0.01	3.0	360	4;2	360	y	0.00	0.5	244	1;0	244	n	0.00	0.5	314	1;0	314	n	0.00	0.0	431	0;0	431	n	0.00	1.0	300	1;1	300	n	0.00	1.5	440	3;0	440	n	ENSMUSG00000030674.6	Qprt	chr7	protein_coding	quinolinate phosphoribosyltransferase
known_NIR_16620	chr7	126794633	126794959	-	126794633	126795087	A5SS	ENSMUST00000205321.2	known	0.57	4	3	4	3	n	0.71	5	2	5	2	n	0.33	4	8	4	8	y	0.50	4	4	4	4	n	0.50	4	4	4	4	n	0.60	3	2	3	2	n	0.50	1	1	1	1	n	0.75	3	1	3	1	n	0.77	10	3	10	3	y	0.20	1	4	1	4	n	0.33	1	2	1	2	n	0.50	1	1	1	1	n	ENSMUSG00000042502.11	Cd2bp2	chr7	protein_coding	CD2 cytoplasmic tail binding protein 2
known_NIR_16621	chr7	126794633	126794959	-	126794633	126795101	A5SS	ENSMUST00000166791.8	known	0.14	4	25	4	25	y	0.21	5	19	5	19	y	0.10	4	35	4	35	y	0.13	4	27	4	27	y	0.11	4	31	4	31	y	0.13	3	20	3	20	y	0.04	1	22	1	22	n	0.16	3	16	3	16	y	0.26	10	28	10	28	y	0.03	1	33	1	33	n	0.05	1	20	1	20	n	0.04	1	26	1	26	n	ENSMUSG00000042502.11	Cd2bp2	chr7	protein_coding	CD2 cytoplasmic tail binding protein 2
known_NIR_16622	chr7	126794633	126795087	-	126794633	126795101	A5SS	ENSMUST00000166791.8	known	0.11	3	25	3	25	y	0.10	2	19	2	19	y	0.19	8	35	8	35	y	0.13	4	27	4	27	y	0.11	4	31	4	31	y	0.09	2	20	2	20	y	0.04	1	22	1	22	n	0.06	1	16	1	16	n	0.10	3	28	3	28	y	0.11	4	33	4	33	y	0.09	2	20	2	20	y	0.04	1	26	1	26	n	ENSMUSG00000042502.11	Cd2bp2	chr7	protein_coding	CD2 cytoplasmic tail binding protein 2
known_NIR_16623	chr7	126794639	126795101	-	126794633	126795101	A3SS	ENSMUST00000166791.8	known	0.00	0	25	0	25	n	0.05	1	19	1	19	n	0.00	0	35	0	35	n	0.04	1	27	1	27	n	0.06	2	31	2	31	y	0.09	2	20	2	20	y	0.00	0	22	0	22	n	0.00	0	16	0	16	n	0.00	0	28	0	28	n	0.00	0	33	0	33	n	0.05	1	20	1	20	n	0.00	0	26	0	26	n	ENSMUSG00000042502.11	Cd2bp2	chr7	protein_coding	CD2 cytoplasmic tail binding protein 2
known_NIR_16624	chr7	126810935	126812033	+	126808123	126812033	A5SS	ENSMUST00000206772.2	known	0.33	1	2	1	2	n	1.00	2	0	2	0	n	1.00	3	0	3	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	n	1.00	2	0	2	0	n	1.00	759	3	759	3	y	1.00	3	0	3	0	n	0.33	1	2	1	2	n	0.67	2	1	2	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000030672.13	Mylpf	chr7	protein_coding	myosin light chain, phosphorylatable, fast skeletal muscle
known_NIR_16625	chr7	126832689	126834436	+	126832658	126834436	A5SS	ENSMUST00000106312.4	known	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.38	3	5	3	5	n	0.29	4	10	4	10	y	0.20	2	8	2	8	y	0.00	0	3	0	3	n	0.22	2	7	2	7	n	0.50	2	2	2	2	n	0.00	0	4	0	4	n	0.10	2	18	2	18	y	0.67	4	2	4	2	n	0.00	0	6	0	6	n	ENSMUSG00000045598.11	Zfp553	chr7	protein_coding	zinc finger protein 553
known_NIR_16626	chr7	126844306	126852977	+	126844306	126844745	3pMXE	ENSMUST00000151893.2	known	1.00	58	0	58	0	n	0.94	58	4	58	4	y	0.96	55	2	55	2	y	0.98	61	1	61	1	n	1.00	108	0	108	0	n	0.97	32	1	32	1	n	0.97	83	3	83	3	y	1.00	29	0	29	0	n	0.98	54	1	54	1	n	1.00	85	0	85	0	n	1.00	76	0	76	0	n	1.00	94	0	94	0	n	ENSMUSG00000054716.5	Zfp771	chr7	protein_coding	zinc finger protein 771
known_NIR_16627	chr7	126844306	126852977	+	126844870	126852977	5pMXE	ENSMUST00000205583.2	known	0.97	58	2	58	2	y	0.95	58	3	58	3	y	0.96	55	2	55	2	y	0.97	61	2	61	2	y	0.98	108	2	108	2	y	1.00	32	0	32	0	n	0.97	83	3	83	3	y	1.00	29	0	29	0	n	0.95	54	3	54	3	y	0.98	85	2	85	2	y	1.00	76	0	76	0	n	0.99	94	1	94	1	n	ENSMUSG00000054716.5	Zfp771	chr7	protein_coding	zinc finger protein 771
known_NIR_16628	chr7	126844306;126844870	126844745;126852977	+	126844306	126852977	cassetteExon	ENSMUST00000052509.6	known	0.02	1.0	58	0;2	58	n	0.06	3.5	58	4;3	58	y	0.04	2.0	55	2;2	55	y	0.02	1.5	61	1;2	61	n	0.01	1.0	108	0;2	108	n	0.02	0.5	32	1;0	32	n	0.03	3.0	83	3;3	83	y	0.00	0.0	29	0;0	29	n	0.04	2.0	54	1;3	54	n	0.01	1.0	85	0;2	85	n	0.00	0.0	76	0;0	76	n	0.01	0.5	94	0;1	94	n	ENSMUSG00000054716.5	Zfp771	chr7	protein_coding	zinc finger protein 771
known_NIR_16629	chr7	126916538	126921067	+	126916535	126921067	A5SS	ENSMUST00000117762.8	known	0.75	6	2	6	2	n	0.00	0	14	0	14	n	0.33	4	8	4	8	y	0.25	1	3	1	3	n	0.20	3	12	3	12	y	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.80	4	1	4	1	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.67	6	3	6	3	n	0.40	2	3	2	3	n	ENSMUSG00000030830.19	Itgal	chr7	protein_coding	integrin alpha L
known_NIR_16630	chr7	126992286	126992462	-	126992286	126992425	A5SS	ENSMUST00000165495.2	known	0.00	0	5	0	5	n	0.33	2	4	2	4	n	0.75	6	2	6	2	n	0.50	2	2	2	2	n	0.12	1	7	1	7	n	-	-	-	-	-	-	0.50	2	2	2	2	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.60	6	4	6	4	y	0.11	1	8	1	8	n	0.40	2	3	2	3	n	ENSMUSG00000078580.4	E430018J23Rik	chr7	protein_coding	RIKEN cDNA E430018J23 gene
known_NIR_16631	chr7	12700226	12703291	+	12700226	12702722	A3SS&ES	ENSMUST00000210619.2	known	0.12	1	7	1	7	n	0.12	1	7	1	7	n	0.00	0	13	0	13	n	0.27	3	8	3	8	y	0.07	1	13	1	13	n	0.14	2	12	2	12	y	0.29	2	5	2	5	n	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.00	0	7	0	7	n	0.12	1	7	1	7	n	0.12	1	7	1	7	n	ENSMUSG00000004500.10	Zfp324	chr7	protein_coding	zinc finger protein 324
known_NIR_16632	chr7	12700226	12703291	+	12700226;12702848	12702722;12703291	ES	ENSMUST00000038701.8	known	0.12	1	7.5	1	7;8	n	0.11	1	8.5	1	7;10	n	0.00	0	15.5	0	13;18	n	0.21	3	11.5	3	8;15	y	0.07	1	14.0	1	13;15	n	0.13	2	13.0	2	12;14	y	0.19	2	8.5	2	5;12	y	0.00	0	9.5	0	5;14	n	0.15	1	5.5	1	4;7	n	0.00	0	6.5	0	7;6	n	0.11	1	8.5	1	7;10	n	0.11	1	8.0	1	7;9	n	ENSMUSG00000004500.10	Zfp324	chr7	protein_coding	zinc finger protein 324
known_NIR_16633	chr7	127018813	127020577	-	127018813	127019182	A5SS	ENSMUST00000135886.2	known	0.08	1	11	1	11	n	0.33	5	10	5	10	y	0.40	10	15	10	15	y	0.55	6	5	6	5	y	0.17	4	20	4	20	y	0.62	5	3	5	3	n	0.24	7	22	7	22	y	0.42	5	7	5	7	y	0.42	5	7	5	7	y	0.30	3	7	3	7	y	0.35	7	13	7	13	y	0.25	4	12	4	12	y	ENSMUSG00000045251.14	Zfp688	chr7	protein_coding	zinc finger protein 688
known_NIR_16634	chr7	127018813	127020981	-	127018813	127019182	A5SS&ES	ENSMUST00000148483.8	known	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.09	2	20	2	20	y	0.00	0	3	0	3	n	0.08	2	22	2	22	y	0.12	1	7	1	7	n	0.22	2	7	2	7	n	0.22	2	7	2	7	n	0.00	0	13	0	13	n	0.20	3	12	3	12	y	ENSMUSG00000045251.14	Zfp688	chr7	protein_coding	zinc finger protein 688
known_NIR_16635	chr7	127018813	127020981	-	127018813;127020690	127020577;127020981	ES	ENSMUST00000106300.2	known	0.00	0	0.5	0	1;0	n	0.00	0	6.0	0	5;7	n	0.00	0	8.0	0	10;6	n	0.00	0	6.0	0	6;6	n	0.27	2	5.5	2	4;7	y	0.00	0	3.0	0	5;1	n	0.24	2	6.5	2	7;6	y	0.17	1	5.0	1	5;5	n	0.33	2	4.0	2	5;3	y	0.36	2	3.5	2	3;4	n	0.00	0	4.5	0	7;2	n	0.50	3	3.0	3	4;2	n	ENSMUSG00000045251.14	Zfp688	chr7	protein_coding	zinc finger protein 688
known_NIR_16636	chr7	127018813;127019277	127019182;127020577	-	127018813	127020577	cassetteExon	ENSMUST00000136123.8	known	0.89	8.0	1	11;5	1	n	0.60	7.5	5	10;5	5	y	0.49	9.5	10	15;4	10	y	0.33	3.0	6	5;1	6	n	0.80	16.5	4	20;13	4	y	0.38	3.0	5	3;3	5	y	0.65	13.0	7	22;4	7	y	0.44	4.0	5	7;1	5	n	0.52	5.5	5	7;4	5	y	0.73	8.0	3	7;9	3	y	0.59	10.0	7	13;7	7	y	0.65	7.5	4	12;3	4	y	ENSMUSG00000045251.14	Zfp688	chr7	protein_coding	zinc finger protein 688
known_NIR_16637	chr7	127020690	127020795	-	127020690	127020981	A5SS	ENSMUST00000106300.2	known	1.00	7	0	7	0	n	0.36	4	7	4	7	y	0.40	4	6	4	6	y	0.33	3	6	3	6	n	0.42	5	7	5	7	y	0.50	1	1	1	1	n	0.25	2	6	2	6	n	0.29	2	5	2	5	n	0.00	0	3	0	3	n	0.56	5	4	5	4	n	0.60	3	2	3	2	n	0.60	3	2	3	2	n	ENSMUSG00000045251.14	Zfp688	chr7	protein_coding	zinc finger protein 688
known_NIR_16638	chr7	127070291	127070877	+	127070291	127071078	A3SS	ENSMUST00000106292.8	known	0.25	3	9	3	9	y	0.45	5	6	5	6	y	0.22	4	14	4	14	y	0.13	2	13	2	13	y	0.33	5	10	5	10	y	0.00	0	10	0	10	n	0.23	5	17	5	17	y	0.25	3	9	3	9	y	0.38	6	10	6	10	y	0.36	5	9	5	9	y	0.27	3	8	3	8	y	0.00	0	13	0	13	n	ENSMUSG00000030822.16	Prr14	chr7	protein_coding	proline rich 14
known_NIR_16639	chr7	127070291	127071270	+	127070291;127071149	127071078;127071270	ES	ENSMUST00000106292.8	known	0.06	2	32.0	2	9;55	y	0.04	1	22.5	1	6;39	n	0.00	0	25.5	0	14;37	n	0.17	7	33.5	7	13;54	y	0.03	1	39.0	1	10;68	n	0.05	1	19.0	1	10;28	n	0.05	2	36.0	2	17;55	y	0.00	0	21.0	0	9;33	n	0.08	2	24.5	2	10;39	y	0.27	9	24.5	9	9;40	y	0.00	0	28.0	0	8;48	n	0.07	3	41.0	3	13;69	y	ENSMUSG00000030822.16	Prr14	chr7	protein_coding	proline rich 14
known_NIR_16640	chr7	127070291	127071270	+	127071149	127071270	5pMXE	ENSMUST00000033095.10	known	0.04	2	55	2	55	y	0.03	1	39	1	39	n	0.00	0	37	0	37	n	0.11	7	54	7	54	y	0.01	1	68	1	68	n	0.03	1	28	1	28	n	0.04	2	55	2	55	y	0.00	0	33	0	33	n	0.05	2	39	2	39	y	0.18	9	40	9	40	y	0.00	0	48	0	48	n	0.04	3	69	3	69	y	ENSMUSG00000030822.16	Prr14	chr7	protein_coding	proline rich 14
known_NIR_16641	chr7	127070291;127071149	127070877;127071270	+	127070291	127071270	cassetteExon	ENSMUST00000133817.8	known	0.94	29.0	2	3;55	2	y	0.96	22.0	1	5;39	1	n	1.00	20.5	0	4;37	0	n	0.80	28.0	7	2;54	7	y	0.97	36.5	1	5;68	1	n	0.93	14.0	1	0;28	1	n	0.94	30.0	2	5;55	2	y	1.00	18.0	0	3;33	0	n	0.92	22.5	2	6;39	2	y	0.71	22.5	9	5;40	9	y	1.00	25.5	0	3;48	0	n	0.92	34.5	3	0;69	3	n	ENSMUSG00000030822.16	Prr14	chr7	protein_coding	proline rich 14
known_NIR_16642	chr7	127075465	127075616	+	127075465	127075556	A3SS	ENSMUST00000106292.8	known	0.06	6	103	6	103	y	0.07	7	92	7	92	y	0.09	8	83	8	83	y	0.12	10	75	10	75	y	0.03	3	86	3	86	y	0.07	3	38	3	38	y	0.07	8	99	8	99	y	0.00	0	47	0	47	n	0.11	11	85	11	85	y	0.01	1	113	1	113	n	0.04	3	75	3	75	y	0.03	3	112	3	112	y	ENSMUSG00000030822.16	Prr14	chr7	protein_coding	proline rich 14
known_NIR_16643	chr7	127086070	127086437	+	127086061	127086437	A5SS	ENSMUST00000205432.3	known	0.00	0	61	0	61	n	0.00	0	29	0	29	n	0.00	0	58	0	58	n	0.03	1	33	1	33	n	0.02	1	56	1	56	n	0.00	0	26	0	26	n	0.00	0	42	0	42	n	0.00	0	26	0	26	n	0.00	0	26	0	26	n	0.03	2	68	2	68	y	0.00	0	40	0	40	n	0.00	0	44	0	44	n	ENSMUSG00000042423.10	Fbrs	chr7	protein_coding	fibrosin
known_NIR_16644	chr7	127088422	127088626	+	127088422	127088560	A3SS	ENSMUST00000205432.3	known	0.02	1	53	1	53	n	0.00	0	54	0	54	n	0.06	5	76	5	76	y	0.12	7	53	7	53	y	0.12	9	67	9	67	y	0.00	0	27	0	27	n	0.02	1	53	1	53	n	0.05	3	54	3	54	y	0.00	0	49	0	49	n	0.00	0	64	0	64	n	0.05	2	41	2	41	y	0.03	2	56	2	56	y	ENSMUSG00000042423.10	Fbrs	chr7	protein_coding	fibrosin
known_NIR_16645	chr7	127111802	127113337	+	127111510	127113337	A5SS	ENSMUST00000185401.7	known	0.12	1	7	1	7	n	0.00	0	3	0	3	n	0.38	3	5	3	5	n	0.18	2	9	2	9	y	0.00	0	13	0	13	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	18	0	18	n	ENSMUSG00000053877.13	Srcap	chr7	protein_coding	Snf2-related CREBBP activator protein
known_NIR_16646	chr7	127112218	127113337	+	127111510	127113337	A5SS	ENSMUST00000185401.7	known	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.13	2	13	2	13	y	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	18	0	18	n	ENSMUSG00000053877.13	Srcap	chr7	protein_coding	Snf2-related CREBBP activator protein
known_NIR_16647	chr7	127113412	127115114	+	127113412	127114376	3pMXE	ENSMUST00000187442.7	known	1.00	6	0	6	0	n	1.00	3	0	3	0	n	1.00	7	0	7	0	n	0.75	3	1	3	1	n	1.00	13	0	13	0	n	1.00	8	0	8	0	n	1.00	4	0	4	0	n	0.86	6	1	6	1	n	1.00	5	0	5	0	n	0.86	12	2	12	2	y	1.00	2	0	2	0	n	1.00	16	0	16	0	n	ENSMUSG00000053877.13	Srcap	chr7	protein_coding	Snf2-related CREBBP activator protein
known_NIR_16648	chr7	127113412;127114482	127114376;127115114	+	127113412	127115114	cassetteExon	ENSMUST00000185401.7	known	0.00	0.0	6	0;0	6	n	0.14	0.5	3	0;1	3	n	0.00	0.0	7	0;0	7	n	0.14	0.5	3	1;0	3	n	0.00	0.0	13	0;0	13	n	0.00	0.0	8	0;0	8	n	0.00	0.0	4	0;0	4	n	0.08	0.5	6	1;0	6	n	0.00	0.0	5	0;0	5	n	0.17	2.5	12	2;3	12	y	0.00	0.0	2	0;0	2	n	0.03	0.5	16	0;1	16	n	ENSMUSG00000053877.13	Srcap	chr7	protein_coding	Snf2-related CREBBP activator protein
known_NIR_16649	chr7	12712039	12712925	+	12712145	12712925	A5SS	ENSMUST00000108535.8	known	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.38	3	5	3	5	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.15	2	11	2	11	y	ENSMUSG00000033961.17	Zfp446	chr7	protein_coding	zinc finger protein 446
known_NIR_16650	chr7	127127661	127128307	+	127127661	127128310	A3SS	ENSMUST00000188124.7	known	0.38	3	5	3	5	n	0.71	5	2	5	2	n	0.58	19	14	19	14	y	0.67	14	7	14	7	y	0.39	9	14	9	14	y	0.43	3	4	3	4	n	0.36	12	21	12	21	y	0.82	9	2	9	2	y	0.46	6	7	6	7	y	0.57	12	9	12	9	y	0.56	5	4	5	4	n	0.62	10	6	10	6	y	ENSMUSG00000053877.13	Srcap	chr7	protein_coding	Snf2-related CREBBP activator protein
known_NIR_16651	chr7	127172628	127173026	+	127172628	127172917	A3SS	ENSMUST00000129457.2	known	1.00	44	0	44	0	n	0.90	35	4	35	4	y	0.95	57	3	57	3	y	0.98	45	1	45	1	n	0.97	66	2	66	2	y	1.00	39	0	39	0	n	1.00	47	0	47	0	n	0.90	38	4	38	4	y	0.97	33	1	33	1	n	0.98	60	1	60	1	n	0.98	41	1	41	1	n	1.00	50	0	50	0	n	ENSMUSG00000030815.12	Phkg2	chr7	protein_coding	phosphorylase kinase, gamma 2 (testis)
known_NIR_16652	chr7	127176818	127177147	+	127176882	127177147	A5SS	ENSMUST00000033086.8	known	0.06	3	51	3	51	y	0.03	2	64	2	64	y	0.04	4	101	4	101	y	0.05	3	62	3	62	y	0.04	3	68	3	68	y	0.03	2	62	2	62	y	0.06	5	78	5	78	y	0.03	2	62	2	62	y	0.06	3	49	3	49	y	0.02	2	82	2	82	y	0.00	0	58	0	58	n	0.07	6	82	6	82	y	ENSMUSG00000030815.12	Phkg2	chr7	protein_coding	phosphorylase kinase, gamma 2 (testis)
known_NIR_16653	chr7	127176818	127178839	+	127176860	127178839	A5SS	ENSMUST00000146383.8	known	0.50	3	3	3	3	n	0.67	8	4	8	4	y	0.00	0	3	0	3	n	0.67	6	3	6	3	n	0.62	5	3	5	3	n	0.80	4	1	4	1	n	0.44	4	5	4	5	n	0.89	8	1	8	1	n	0.50	2	2	2	2	n	0.71	15	6	15	6	y	0.89	8	1	8	1	n	0.45	5	6	5	6	y	ENSMUSG00000030815.12	Phkg2	chr7	protein_coding	phosphorylase kinase, gamma 2 (testis)
known_NIR_16654	chr7	127176818	127178839	+	127177201	127178839	A5SS&ES	ENSMUST00000033086.8	known	0.05	3	55	3	55	y	0.14	8	51	8	51	y	0.00	0	88	0	88	n	0.09	6	64	6	64	y	0.06	5	76	5	76	y	0.06	4	60	4	60	y	0.05	4	72	4	72	y	0.11	8	65	8	65	y	0.04	2	46	2	46	y	0.16	15	78	15	78	y	0.11	8	62	8	62	y	0.06	5	74	5	74	y	ENSMUSG00000030815.12	Phkg2	chr7	protein_coding	phosphorylase kinase, gamma 2 (testis)
known_NIR_16655	chr7	127176818;127177201	127177147;127178839	+	127176818	127178839	cassetteExon	ENSMUST00000205633.2	known	0.91	29.0	3	3;55	3	y	0.77	26.5	8	2;51	8	y	1.00	46.0	0	4;88	0	n	0.85	33.5	6	3;64	6	y	0.89	39.5	5	3;76	5	y	0.89	31.0	4	2;60	4	y	0.91	38.5	4	5;72	4	y	0.81	33.5	8	2;65	8	y	0.92	24.5	2	3;46	2	y	0.73	40.0	15	2;78	15	y	0.79	31.0	8	0;62	8	n	0.89	40.0	5	6;74	5	y	ENSMUSG00000030815.12	Phkg2	chr7	protein_coding	phosphorylase kinase, gamma 2 (testis)
known_NIR_16656	chr7	127177201	127178839	+	127176860	127178839	A5SS	ENSMUST00000146383.8	known	0.95	55	3	55	3	y	0.93	51	4	51	4	y	0.97	88	3	88	3	y	0.96	64	3	64	3	y	0.96	76	3	76	3	y	0.98	60	1	60	1	n	0.94	72	5	72	5	y	0.98	65	1	65	1	n	0.96	46	2	46	2	y	0.93	78	6	78	6	y	0.98	62	1	62	1	n	0.93	74	6	74	6	y	ENSMUSG00000030815.12	Phkg2	chr7	protein_coding	phosphorylase kinase, gamma 2 (testis)
known_NIR_16657	chr7	127208006	127211839	-	127211734	127211839	A3SS	ENSMUST00000058038.12	known	0.50	1	1	1	1	n	0.29	2	5	2	5	n	0.10	1	9	1	9	n	0.22	2	7	2	7	n	0.11	1	8	1	8	n	0.40	2	3	2	3	n	0.27	4	11	4	11	y	0.00	0	5	0	5	n	0.31	4	9	4	9	y	0.12	2	14	2	14	y	0.18	2	9	2	9	y	0.00	0	9	0	9	n	ENSMUSG00000045639.15	Zfp629	chr7	protein_coding	zinc finger protein 629
known_NIR_16658	chr7	12728965	12731305	-	12728965	12730158	5pMXE	ENSMUST00000155192.2	known	0.00	0	1951	0	1951	n	0.00	5	1694	5	1694	y	0.00	3	1074	3	1074	y	0.00	0	2938	0	2938	n	0.00	0	2371	0	2371	n	0.01	4	655	4	655	y	0.00	6	2396	6	2396	y	0.00	0	1022	0	1022	n	0.01	14	2174	14	2174	y	0.00	6	3047	6	3047	y	0.00	8	2186	8	2186	y	0.00	5	3096	5	3096	y	ENSMUSG00000030382.16	Slc27a5	chr7	protein_coding	solute carrier family 27 (fatty acid transporter), member 5
known_NIR_16659	chr7	12728965	12731305	-	12728965;12730367	12730158;12731305	ES	ENSMUST00000032539.14	known	0.00	0	1790.0	0	1951;1629	n	0.00	5	1504.5	5	1694;1315	y	0.00	3	959.0	3	1074;844	y	0.00	0	2615.5	0	2938;2293	n	0.00	0	2201.0	0	2371;2031	n	0.01	4	630.5	4	655;606	y	0.00	6	2118.5	6	2396;1841	y	0.00	0	958.0	0	1022;894	n	0.01	14	1951.5	14	2174;1729	y	0.00	6	2777.0	6	3047;2507	y	0.00	8	1939.0	8	2186;1692	y	0.00	5	2779.5	5	3096;2463	y	ENSMUSG00000030382.16	Slc27a5	chr7	protein_coding	solute carrier family 27 (fatty acid transporter), member 5
known_NIR_16660	chr7	127304984	127307052	-	127304984;127306476	127306348;127307052	ES	ENSMUST00000106282.8	known	0.00	0	131.0	0	262;0	n	0.00	0	142.0	0	284;0	n	0.00	0	53.0	0	106;0	n	0.01	1	93.0	1	186;0	n	0.00	0	166.5	0	333;0	n	0.00	0	43.5	0	87;0	n	0.00	0	201.0	0	402;0	n	0.00	0	63.5	0	127;0	n	0.00	0	94.0	0	188;0	n	0.00	0	160.0	0	320;0	n	0.00	0	136.0	0	272;0	n	0.03	3	106.0	3	210;2	y	ENSMUSG00000030814.18	Bcl7c	chr7	protein_coding	B cell CLL/lymphoma 7C
known_NIR_16661	chr7	127304984;127306713	127306348;127307052	-	127304984	127307052	cassetteExon	ENSMUST00000207019.2	known	1.00	135.5	0	262;9	0	n	1.00	153.0	0	284;22	0	n	1.00	61.0	0	106;16	0	n	0.99	103.0	1	186;20	1	n	1.00	181.5	0	333;30	0	n	1.00	50.5	0	87;14	0	n	1.00	216.0	0	402;30	0	n	1.00	71.0	0	127;15	0	n	1.00	100.5	0	188;13	0	n	1.00	173.0	0	320;26	0	n	1.00	152.0	0	272;32	0	n	0.97	112.5	3	210;15	3	y	ENSMUSG00000030814.18	Bcl7c	chr7	protein_coding	B cell CLL/lymphoma 7C
known_NIR_16662	chr7	127306713	127307052	-	127306476	127307052	A3SS	ENSMUST00000106282.8	known	1.00	9	0	9	0	n	1.00	22	0	22	0	n	1.00	16	0	16	0	n	1.00	20	0	20	0	n	1.00	30	0	30	0	n	1.00	14	0	14	0	n	1.00	30	0	30	0	n	1.00	15	0	15	0	n	1.00	13	0	13	0	n	1.00	26	0	26	0	n	1.00	32	0	32	0	n	0.88	15	2	15	2	y	ENSMUSG00000030814.18	Bcl7c	chr7	protein_coding	B cell CLL/lymphoma 7C
known_NIR_16663	chr7	127312193	127313097	+	127311951	127313097	A5SS	ENSMUST00000047393.7	known	0.33	4	8	4	8	y	0.43	3	4	3	4	n	0.22	2	7	2	7	n	0.36	4	7	4	7	y	0.46	11	13	11	13	y	0.41	7	10	7	10	y	0.37	7	12	7	12	y	0.50	4	4	4	4	n	0.50	7	7	7	7	y	0.40	6	9	6	9	y	0.44	4	5	4	5	n	0.36	5	9	5	9	y	ENSMUSG00000042340.7	Ctf1	chr7	protein_coding	cardiotrophin 1
known_NIR_16664	chr7	127349239	127350037	+	127349239;127349538	127349320;127350037	ES	ENSMUST00000186207.7	known	0.12	1	7.0	1	5;9	n	0.21	2	7.5	2	6;9	y	0.00	0	9.5	0	10;9	n	0.19	2	8.5	2	7;10	y	0.00	0	10.0	0	11;9	n	0.00	0	8.0	0	9;7	n	0.15	2	11.5	2	10;13	y	0.00	0	9.5	0	8;11	n	0.15	1	5.5	1	5;6	n	0.08	1	11.0	1	9;13	n	0.00	0	6.5	0	7;6	n	0.00	0	4.5	0	6;3	n	ENSMUSG00000030811.15	Fbxl19	chr7	protein_coding	F-box and leucine-rich repeat protein 19
known_NIR_16665	chr7	127350069	127351182	+	127350198	127351182	A5SS	ENSMUST00000186207.7	known	0.60	6	4	6	4	y	0.27	3	8	3	8	y	0.44	4	5	4	5	n	0.25	1	3	1	3	n	0.40	4	6	4	6	y	0.33	2	4	2	4	n	0.33	3	6	3	6	n	0.38	3	5	3	5	n	0.50	5	5	5	5	y	0.56	9	7	9	7	y	0.40	2	3	2	3	n	1.00	4	0	4	0	n	ENSMUSG00000030811.15	Fbxl19	chr7	protein_coding	F-box and leucine-rich repeat protein 19
known_NIR_16666	chr7	127369388;127370050	127369906;127372729	+	127369388	127372729	cassetteExon	ENSMUST00000118865.8	known	0.03	1.0	38	0;2	38	n	0.00	0.0	16	0;0	16	n	0.02	1.5	64	3;0	64	n	0.02	1.0	43	1;1	43	n	0.07	5.0	67	4;6	67	y	0.05	1.5	30	0;3	30	n	0.04	2.5	57	4;1	57	n	0.09	4.5	48	1;8	48	n	0.13	4.0	27	5;3	27	y	0.00	0.0	64	0;0	64	n	0.01	0.5	42	0;1	42	n	0.07	3.0	40	4;2	40	y	ENSMUSG00000043964.15	Orai3	chr7	protein_coding	ORAI calcium release-activated calcium modulator 3
known_NIR_16667	chr7	127399886	127400224	+	127399886	127400247	A3SS	ENSMUST00000046863.12	known	0.00	0	603	0	603	n	0.00	0	440	0	440	n	0.00	0	386	0	386	n	0.00	1	774	1	774	n	0.00	0	1066	0	1066	n	0.00	0	311	0	311	n	0.00	4	888	4	888	y	0.01	4	424	4	424	y	0.00	0	706	0	706	n	0.00	0	920	0	920	n	0.00	0	607	0	607	n	0.00	0	677	0	677	n	ENSMUSG00000042289.12	Hsd3b7	chr7	protein_coding	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
known_NIR_16668	chr7	127399886	127400224	+	127399886	127400299	A3SS	ENSMUST00000125188.8	known	0.00	0	81	0	81	n	0.00	0	31	0	31	n	0.00	0	38	0	38	n	0.01	1	92	1	92	n	0.00	0	134	0	134	n	0.00	0	27	0	27	n	0.04	4	110	4	110	y	0.06	4	59	4	59	y	0.00	0	102	0	102	n	0.00	0	97	0	97	n	0.00	0	75	0	75	n	0.00	0	63	0	63	n	ENSMUSG00000042289.12	Hsd3b7	chr7	protein_coding	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
known_NIR_16669	chr7	127399886	127400299	+	127399886	127400247	A3SS	ENSMUST00000046863.12	known	0.12	81	603	81	603	y	0.07	31	440	31	440	y	0.09	38	386	38	386	y	0.11	92	774	92	774	y	0.11	134	1066	134	1066	y	0.08	27	311	27	311	y	0.11	110	888	110	888	y	0.12	59	424	59	424	y	0.13	102	706	102	706	y	0.10	97	920	97	920	y	0.11	75	607	75	607	y	0.09	63	677	63	677	y	ENSMUSG00000042289.12	Hsd3b7	chr7	protein_coding	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
known_NIR_16670	chr7	127400222	127400299	+	127399886	127400299	A5SS	ENSMUST00000125188.8	known	0.06	5	81	5	81	y	0.09	3	31	3	31	y	0.21	10	38	10	38	y	0.06	6	92	6	92	y	0.06	8	134	8	134	y	0.10	3	27	3	27	y	0.04	4	110	4	110	y	0.06	4	59	4	59	y	0.06	6	102	6	102	y	0.04	4	97	4	97	y	0.03	2	75	2	75	y	0.10	7	63	7	63	y	ENSMUSG00000042289.12	Hsd3b7	chr7	protein_coding	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
known_NIR_16671	chr7	127400418	127400564	+	127400418	127400633	A3SS	ENSMUST00000154987.8	known	0.01	9	1093	9	1093	y	0.02	14	806	14	806	y	0.01	7	664	7	664	y	0.01	13	1327	13	1327	y	0.02	34	1844	34	1844	y	0.02	9	566	9	566	y	0.01	19	1620	19	1620	y	0.02	16	722	16	722	y	0.01	16	1148	16	1148	y	0.01	23	1804	23	1804	y	0.01	14	1196	14	1196	y	0.01	14	1277	14	1277	y	ENSMUSG00000108815.2	Gm49388	chr7	protein_coding	predicted gene, 49388
known_NIR_16672	chr7	127400418	127400564	+	127400418	127401186	A3SS	ENSMUST00000206674.2	known	1.00	9	0	9	0	n	1.00	14	0	14	0	n	1.00	7	0	7	0	n	1.00	13	0	13	0	n	0.94	34	2	34	2	y	1.00	9	0	9	0	n	1.00	19	0	19	0	n	1.00	16	0	16	0	n	1.00	16	0	16	0	n	1.00	23	0	23	0	n	1.00	14	0	14	0	n	0.82	14	3	14	3	y	ENSMUSG00000042289.12	Hsd3b7	chr7	protein_coding	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
known_NIR_16673	chr7	127400418	127401006	+	127400418	127400633	3pMXE	ENSMUST00000138432.2	known	0.00	3	1093	3	1093	y	0.00	2	806	2	806	y	0.00	3	664	3	664	y	0.00	2	1327	2	1327	y	0.00	1	1844	1	1844	n	0.01	3	566	3	566	y	0.00	5	1620	5	1620	y	0.01	5	722	5	722	y	0.00	2	1148	2	1148	y	0.00	4	1804	4	1804	y	0.00	0	1196	0	1196	n	0.00	2	1277	2	1277	y	ENSMUSG00000042289.12	Hsd3b7	chr7	protein_coding	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
known_NIR_16674	chr7	127400418	127401006	+	127400418;127400788	127400564;127401006	ES	ENSMUST00000155005.3	known	0.01	3	498.0	3	9;987	y	0.01	2	353.0	2	14;692	y	0.01	3	280.5	3	7;554	y	0.00	2	527.0	2	13;1041	y	0.00	1	766.0	1	34;1498	n	0.01	3	270.0	3	9;531	y	0.01	5	717.0	5	19;1415	y	0.02	5	302.0	5	16;588	y	0.00	2	532.0	2	16;1048	y	0.01	4	786.5	4	23;1550	y	0.00	0	555.5	0	14;1097	n	0.00	2	543.0	2	14;1072	y	ENSMUSG00000042289.12	Hsd3b7	chr7	protein_coding	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
known_NIR_16675	chr7	127400418	127401006	+	127400418;127400788	127400633;127401006	ES	ENSMUST00000154987.8	known	0.00	3	1040.0	3	1093;987	y	0.00	2	749.0	2	806;692	y	0.00	3	609.0	3	664;554	y	0.00	2	1184.0	2	1327;1041	y	0.00	1	1671.0	1	1844;1498	n	0.01	3	548.5	3	566;531	y	0.00	5	1517.5	5	1620;1415	y	0.01	5	655.0	5	722;588	y	0.00	2	1098.0	2	1148;1048	y	0.00	4	1677.0	4	1804;1550	y	0.00	0	1146.5	0	1196;1097	n	0.00	2	1174.5	2	1277;1072	y	ENSMUSG00000108815.2	Gm49388	chr7	protein_coding	predicted gene, 49388
known_NIR_16676	chr7	127400418	127401006	+	127400788	127401006	A5SS	ENSMUST00000206995.2	known	0.00	3	987	3	987	y	0.00	2	692	2	692	y	0.01	3	554	3	554	y	0.00	2	1041	2	1041	y	0.00	1	1498	1	1498	n	0.01	3	531	3	531	y	0.00	5	1415	5	1415	y	0.01	5	588	5	588	y	0.00	2	1048	2	1048	y	0.00	4	1550	4	1550	y	0.00	0	1097	0	1097	n	0.00	2	1072	2	1072	y	ENSMUSG00000042289.12	Hsd3b7	chr7	protein_coding	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
known_NIR_16677	chr7	127400418	127401186	+	127400418	127400633	A3SS&ES	ENSMUST00000132702.8	known	0.00	0	1093	0	1093	n	0.00	0	806	0	806	n	0.00	0	664	0	664	n	0.00	0	1327	0	1327	n	0.00	2	1844	2	1844	y	0.00	0	566	0	566	n	0.00	0	1620	0	1620	n	0.00	0	722	0	722	n	0.00	0	1148	0	1148	n	0.00	0	1804	0	1804	n	0.00	0	1196	0	1196	n	0.00	3	1277	3	1277	y	ENSMUSG00000042289.12	Hsd3b7	chr7	protein_coding	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
known_NIR_16678	chr7	127400418;127401114	127400633;127401186	+	127400418	127401186	cassetteExon	ENSMUST00000206674.2	known	1.00	988.0	0	1093;883	0	n	1.00	715.5	0	806;625	0	n	1.00	587.0	0	664;510	0	n	1.00	1132.0	0	1327;937	0	n	1.00	1639.0	2	1844;1434	2	y	1.00	497.0	0	566;428	0	n	1.00	1459.0	0	1620;1298	0	n	1.00	601.5	0	722;481	0	n	1.00	1069.0	0	1148;990	0	n	1.00	1586.0	0	1804;1368	0	n	1.00	1087.0	0	1196;978	0	n	1.00	1134.0	3	1277;991	3	y	ENSMUSG00000042289.12	Hsd3b7	chr7	protein_coding	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
known_NIR_16679	chr7	127400418;127401114	127401006;127401186	+	127400418	127401186	cassetteExon	ENSMUST00000206674.2	known	1.00	443.0	0	3;883	0	n	1.00	313.5	0	2;625	0	n	1.00	256.5	0	3;510	0	n	1.00	469.5	0	2;937	0	n	1.00	717.5	2	1;1434	2	n	1.00	215.5	0	3;428	0	n	1.00	651.5	0	5;1298	0	n	1.00	243.0	0	5;481	0	n	1.00	496.0	0	2;990	0	n	1.00	686.0	0	4;1368	0	n	1.00	489.0	0	0;978	0	n	0.99	496.5	3	2;991	3	y	ENSMUSG00000042289.12	Hsd3b7	chr7	protein_coding	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
known_NIR_16680	chr7	127400535	127400633	+	127400418	127400633	A5SS	ENSMUST00000154987.8	known	0.03	29	1093	29	1093	y	0.02	19	806	19	806	y	0.06	42	664	42	664	y	0.01	13	1327	13	1327	y	0.02	40	1844	40	1844	y	0.04	24	566	24	566	y	0.01	24	1620	24	1620	y	0.03	23	722	23	722	y	0.02	18	1148	18	1148	y	0.02	32	1804	32	1804	y	0.01	18	1196	18	1196	y	0.02	30	1277	30	1277	y	ENSMUSG00000108815.2	Gm49388	chr7	protein_coding	predicted gene, 49388
known_NIR_16681	chr7	127401285	127401501	+	127401285	127401408	A3SS	ENSMUST00000154987.8	known	0.00	5	1185	5	1185	y	0.01	12	970	12	970	y	0.02	10	655	10	655	y	0.01	10	1172	10	1172	y	0.00	8	1753	8	1753	y	0.00	2	612	2	612	y	0.01	9	1593	9	1593	y	0.00	2	690	2	690	y	0.00	2	1213	2	1213	y	0.01	16	1768	16	1768	y	0.01	11	1203	11	1203	y	0.01	10	1291	10	1291	y	ENSMUSG00000108815.2	Gm49388	chr7	protein_coding	predicted gene, 49388
known_NIR_16682	chr7	127401285	127401501	+	127401373	127401501	A5SS	ENSMUST00000206674.2	known	0.71	5	2	5	2	n	0.80	12	3	12	3	y	1.00	10	0	10	0	n	0.71	10	4	10	4	y	0.80	8	2	8	2	y	0.67	2	1	2	1	n	0.60	9	6	9	6	y	0.67	2	1	2	1	n	0.50	2	2	2	2	n	0.80	16	4	16	4	y	0.79	11	3	11	3	y	0.77	10	3	10	3	y	ENSMUSG00000042289.12	Hsd3b7	chr7	protein_coding	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
known_NIR_16683	chr7	127401285	127401958	+	127401285	127401408	A3SS	ENSMUST00000144748.8	known	0.01	7	1185	7	1185	y	0.00	0	970	0	970	n	0.01	5	655	5	655	y	0.01	6	1172	6	1172	y	0.00	0	1753	0	1753	n	0.00	2	612	2	612	y	0.00	4	1593	4	1593	y	0.01	4	690	4	690	y	0.00	4	1213	4	1213	y	0.00	6	1768	6	1768	y	0.00	4	1203	4	1203	y	0.00	2	1291	2	1291	y	ENSMUSG00000042289.12	Hsd3b7	chr7	protein_coding	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
known_NIR_16684	chr7	127401285	127401958	+	127401285;127401570	127401408;127401958	ES	ENSMUST00000154987.8	known	0.01	7	1107.5	7	1185;1030	y	0.00	0	921.5	0	970;873	n	0.01	5	593.0	5	655;531	y	0.01	6	1123.5	6	1172;1075	y	0.00	0	1633.5	0	1753;1514	n	0.00	2	581.5	2	612;551	y	0.00	4	1525.0	4	1593;1457	y	0.01	4	659.0	4	690;628	y	0.00	4	1124.5	4	1213;1036	y	0.00	6	1634.0	6	1768;1500	y	0.00	4	1135.5	4	1203;1068	y	0.00	2	1238.0	2	1291;1185	y	ENSMUSG00000108815.2	Gm49388	chr7	protein_coding	predicted gene, 49388
known_NIR_16685	chr7	127401285	127401958	+	127401285;127401570	127401501;127401958	ES	ENSMUST00000106272.8	known	0.01	7	517.5	7	5;1030	y	0.00	0	442.5	0	12;873	n	0.02	5	270.5	5	10;531	y	0.01	6	542.5	6	10;1075	y	0.00	0	761.0	0	8;1514	n	0.01	2	276.5	2	2;551	y	0.01	4	733.0	4	9;1457	y	0.01	4	315.0	4	2;628	y	0.01	4	519.0	4	2;1036	y	0.01	6	758.0	6	16;1500	y	0.01	4	539.5	4	11;1068	y	0.00	2	597.5	2	10;1185	y	ENSMUSG00000042289.12	Hsd3b7	chr7	protein_coding	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
known_NIR_16686	chr7	12742256	12743693	-	12742256	12743563	A5SS	ENSMUST00000172240.2	known	0.75	3	1	3	1	n	0.40	2	3	2	3	n	0.55	6	5	6	5	y	0.33	1	2	1	2	n	0.60	3	2	3	2	n	0.50	3	3	3	3	n	0.33	1	2	1	2	n	0.33	2	4	2	4	n	1.00	2	0	2	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.80	4	1	4	1	n	ENSMUSG00000049600.9	Zbtb45	chr7	protein_coding	zinc finger and BTB domain containing 45
known_NIR_16687	chr7	127441537	127441595	+	127441537	127441617	A3SS	ENSMUST00000033075.14	known	0.01	1	119	1	119	n	0.03	3	97	3	97	y	0.04	5	136	5	136	y	0.00	0	106	0	106	n	0.04	5	123	5	123	y	0.02	2	84	2	84	y	0.04	6	154	6	154	y	0.00	0	58	0	58	n	0.03	3	114	3	114	y	0.01	2	201	2	201	y	0.01	1	107	1	107	n	0.02	4	158	4	158	y	ENSMUSG00000030805.15	Stx4a	chr7	protein_coding	syntaxin 4A (placental)
known_NIR_16688	chr7	127445300	127445660	+	127445448	127445660	A5SS	ENSMUST00000138294.2	known	0.00	0	139	0	139	n	0.00	0	124	0	124	n	0.01	2	139	2	139	y	0.01	1	76	1	76	n	0.00	0	107	0	107	n	0.00	0	73	0	73	n	0.00	0	146	0	146	n	0.00	0	75	0	75	n	0.02	2	102	2	102	y	0.00	0	173	0	173	n	0.00	0	148	0	148	n	0.00	0	128	0	128	n	ENSMUSG00000030805.15	Stx4a	chr7	protein_coding	syntaxin 4A (placental)
known_NIR_16689	chr7	127445300;127445448	127445372;127445660	+	127445300	127445660	cassetteExon	ENSMUST00000152310.8	known	1.00	139.0	0	139;139	0	n	1.00	121.5	0	119;124	0	n	0.99	149.0	2	159;139	2	y	0.99	97.0	1	118;76	1	n	1.00	122.5	0	138;107	0	n	1.00	71.0	0	69;73	0	n	1.00	156.5	0	167;146	0	n	1.00	83.5	0	92;75	0	n	0.98	102.5	2	103;102	2	y	1.00	172.0	0	171;173	0	n	1.00	149.0	0	150;148	0	n	1.00	141.0	0	154;128	0	n	ENSMUSG00000030805.15	Stx4a	chr7	protein_coding	syntaxin 4A (placental)
known_NIR_16690	chr7	127447670	127447923	+	127447670	127447741	A3SS	ENSMUST00000121705.8	known	0.02	2	117	2	117	y	0.00	0	120	0	120	n	0.01	1	156	1	156	n	0.00	0	104	0	104	n	0.01	1	110	1	110	n	0.00	0	73	0	73	n	0.02	4	160	4	160	y	0.00	0	54	0	54	n	0.00	0	92	0	92	n	0.00	0	159	0	159	n	0.02	3	140	3	140	y	0.00	0	152	0	152	n	ENSMUSG00000030805.15	Stx4a	chr7	protein_coding	syntaxin 4A (placental)
known_NIR_16691	chr7	127447670	127447923	+	127447839	127447923	A5SS	ENSMUST00000125861.2	known	0.02	2	80	2	80	y	0.00	0	98	0	98	n	0.01	1	118	1	118	n	0.00	0	83	0	83	n	0.01	1	112	1	112	n	0.00	0	67	0	67	n	0.03	4	141	4	141	y	0.00	0	61	0	61	n	0.00	0	94	0	94	n	0.00	0	137	0	137	n	0.03	3	105	3	105	y	0.00	0	125	0	125	n	ENSMUSG00000030805.15	Stx4a	chr7	protein_coding	syntaxin 4A (placental)
known_NIR_16692	chr7	127447670;127447839	127447741;127447923	+	127447670	127447923	cassetteExon	ENSMUST00000152310.8	known	0.98	98.5	2	117;80	2	y	1.00	109.0	0	120;98	0	n	0.99	137.0	1	156;118	1	n	1.00	93.5	0	104;83	0	n	0.99	111.0	1	110;112	1	n	1.00	70.0	0	73;67	0	n	0.97	150.5	4	160;141	4	y	1.00	57.5	0	54;61	0	n	1.00	93.0	0	92;94	0	n	1.00	148.0	0	159;137	0	n	0.98	122.5	3	140;105	3	y	1.00	138.5	0	152;125	0	n	ENSMUSG00000030805.15	Stx4a	chr7	protein_coding	syntaxin 4A (placental)
known_NIR_16693	chr7	127493786	127494459	-	127493786	127494581	A5SS	ENSMUST00000126662.2	known	0.00	3	961	3	961	y	0.00	3	983	3	983	y	0.00	0	606	0	606	n	0.00	1	927	1	927	n	0.00	0	1281	0	1281	n	0.00	0	488	0	488	n	0.00	1	1152	1	1152	n	0.00	1	669	1	669	n	0.00	0	883	0	883	n	0.00	3	1327	3	1327	y	0.00	2	1304	2	1304	y	0.00	2	1027	2	1027	y	ENSMUSG00000030804.9	Gm21974	chr7	protein_coding	predicted gene 21974
known_NIR_16694	chr7	127532664	127533311	-	127532664	127532739	A5SS&ES	ENSMUST00000153110.8	known	0.12	2	14	2	14	y	0.14	1	6	1	6	n	0.10	2	18	2	18	y	0.11	2	16	2	16	y	0.21	7	26	7	26	y	0.27	4	11	4	11	y	0.00	0	17	0	17	n	0.18	2	9	2	9	y	0.05	1	18	1	18	n	0.00	0	25	0	25	n	0.07	2	25	2	25	y	0.11	2	16	2	16	y	ENSMUSG00000070371.12	Prss36	chr7	protein_coding	protease, serine 36
known_NIR_16695	chr7	127532664	127533562	-	127532664	127532739	A5SS&ES	ENSMUST00000153110.8	known	0.00	0	14	0	14	n	0.33	3	6	3	6	n	0.00	0	18	0	18	n	0.11	2	16	2	16	y	0.04	1	26	1	26	n	0.21	3	11	3	11	y	0.00	0	17	0	17	n	0.31	4	9	4	9	y	0.05	1	18	1	18	n	0.14	4	25	4	25	y	0.00	0	25	0	25	n	0.16	3	16	3	16	y	ENSMUSG00000070371.12	Prss36	chr7	protein_coding	protease, serine 36
known_NIR_16696	chr7	127532664	127533562	-	127532664;127533452	127533311;127533562	ES	ENSMUST00000152697.3	known	0.00	0	7.5	0	2;13	n	0.33	3	6.0	3	1;11	n	0.00	0	1.5	0	2;1	n	0.27	2	5.5	2	2;9	y	0.09	1	10.0	1	7;13	n	0.30	3	7.0	3	4;10	y	0.00	0	5.5	0	0;11	n	0.62	4	2.5	4	2;3	n	0.12	1	7.5	1	1;14	n	0.30	4	9.5	4	0;19	n	0.00	0	7.0	0	2;12	n	0.23	3	10.0	3	2;18	y	ENSMUSG00000070371.12	Prss36	chr7	protein_coding	protease, serine 36
known_NIR_16697	chr7	127532664	127533682	-	127532664	127532739	A5SS&ES	ENSMUST00000118755.8	known	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.18	4	18	4	18	y	0.06	1	16	1	16	n	0.07	2	26	2	26	y	0.00	0	11	0	11	n	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.05	1	18	1	18	n	0.00	0	25	0	25	n	0.04	1	25	1	25	n	0.00	0	16	0	16	n	ENSMUSG00000070371.12	Prss36	chr7	protein_coding	protease, serine 36
known_NIR_16698	chr7	127532664;127533004	127532739;127533311	-	127532664	127533311	cassetteExon	ENSMUST00000152697.3	known	0.88	14.0	2	14;14	2	y	0.86	6.0	1	6;6	1	n	0.83	10.0	2	18;2	2	y	0.87	13.0	2	16;10	2	y	0.70	16.0	7	26;6	7	y	0.68	8.5	4	11;6	4	y	1.00	14.5	0	17;12	0	n	0.76	6.5	2	9;4	2	y	0.95	18.0	1	18;18	1	n	1.00	18.5	0	25;12	0	n	0.89	16.0	2	25;7	2	y	0.89	16.5	2	16;17	2	y	ENSMUSG00000070371.12	Prss36	chr7	protein_coding	protease, serine 36
known_NIR_16699	chr7	127533004	127533311	-	127533004	127533682	A5SS	ENSMUST00000153110.8	known	1.00	14	0	14	0	n	0.86	6	1	6	1	n	1.00	2	0	2	0	n	0.83	10	2	10	2	y	0.86	6	1	6	1	n	1.00	6	0	6	0	n	0.86	12	2	12	2	y	0.67	4	2	4	2	n	0.90	18	2	18	2	y	0.92	12	1	12	1	n	0.88	7	1	7	1	n	0.85	17	3	17	3	y	ENSMUSG00000070371.12	Prss36	chr7	protein_coding	protease, serine 36
known_NIR_16700	chr7	127533799	127534575	-	127533799	127534619	A5SS	ENSMUST00000153110.8	known	0.30	3	7	3	7	y	0.29	2	5	2	5	n	0.00	0	3	0	3	n	0.56	5	4	5	4	n	0.30	3	7	3	7	y	0.33	1	2	1	2	n	0.56	5	4	5	4	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.36	4	7	4	7	y	0.36	5	9	5	9	y	0.25	2	6	2	6	n	ENSMUSG00000070371.12	Prss36	chr7	protein_coding	protease, serine 36
known_NIR_16701	chr7	127569043	127571013	+	127569043	127571010	A3SS	ENSMUST00000106251.10	known	0.37	52	87	52	87	y	0.27	35	93	35	93	y	0.29	86	214	86	214	y	0.34	50	97	50	97	y	0.37	66	111	66	111	y	0.34	63	124	63	124	y	0.22	37	132	37	132	y	0.22	31	108	31	108	y	0.23	26	85	26	85	y	0.34	61	119	61	119	y	0.40	51	75	51	75	y	0.29	51	126	51	126	y	ENSMUSG00000030795.19	Fus	chr7	protein_coding	fused in sarcoma
known_NIR_16702	chr7	127571942	127575060	+	127571942;127573606	127573572;127575060	ES	ENSMUST00000106251.10	known	0.05	6	119.5	6	101;138	y	0.12	16	121.5	16	102;141	y	0.03	9	279.0	9	245;313	y	0.07	11	141.5	11	127;156	y	0.11	18	143.5	18	132;155	y	0.01	2	138.5	2	118;159	y	0.04	5	118.0	5	99;137	y	0.04	5	122.0	5	102;142	y	0.17	17	83.0	17	74;92	y	0.13	22	153.5	22	136;171	y	0.03	5	140.5	5	129;152	y	0.12	16	117.0	16	98;136	y	ENSMUSG00000030795.19	Fus	chr7	protein_coding	fused in sarcoma
known_NIR_16703	chr7	127571942	127575060	+	127573606	127575060	5pMXE	ENSMUST00000155941.8	known	0.04	6	138	6	138	y	0.10	16	141	16	141	y	0.03	9	313	9	313	y	0.07	11	156	11	156	y	0.10	18	155	18	155	y	0.01	2	159	2	159	y	0.04	5	137	5	137	y	0.03	5	142	5	142	y	0.16	17	92	17	92	y	0.11	22	171	22	171	y	0.03	5	152	5	152	y	0.11	16	136	16	136	y	ENSMUSG00000030795.19	Fus	chr7	protein_coding	fused in sarcoma
known_NIR_16704	chr7	127579165	127579382	+	127579165	127579295	A3SS	ENSMUST00000106251.10	known	0.00	0	89	0	89	n	0.00	0	119	0	119	n	0.00	0	205	0	205	n	0.02	2	98	2	98	y	0.00	0	153	0	153	n	0.00	0	104	0	104	n	0.00	0	141	0	141	n	0.00	0	85	0	85	n	0.00	0	88	0	88	n	0.01	1	143	1	143	n	0.00	0	97	0	97	n	0.00	0	120	0	120	n	ENSMUSG00000030795.19	Fus	chr7	protein_coding	fused in sarcoma
known_NIR_16705	chr7	12758988	12759231	+	12733159	12759231	A5SS	ENSMUST00000209577.2	known	0.89	48	6	48	6	y	0.97	34	1	34	1	n	1.00	81	0	81	0	n	0.65	45	24	45	24	y	0.96	55	2	55	2	y	1.00	20	0	20	0	n	0.88	50	7	50	7	y	1.00	34	0	34	0	n	0.76	35	11	35	11	y	0.92	72	6	72	6	y	0.89	42	5	42	5	y	0.89	58	7	58	7	y	ENSMUSG00000005566.15	Trim28	chr7	protein_coding	tripartite motif-containing 28
known_NIR_16706	chr7	12766277	12767756	-	12766277;12766492	12766362;12767756	ES	ENSMUST00000211344.2	known	0.00	1	199.5	1	399;0	n	0.00	0	249.0	0	496;2	n	0.00	0	300.5	0	597;4	n	0.00	0	187.5	0	374;1	n	0.00	0	263.0	0	524;2	n	0.00	0	180.5	0	358;3	n	0.00	1	318.5	1	634;3	n	0.00	0	129.0	0	257;1	n	0.00	0	183.0	0	366;0	n	0.01	2	287.0	2	572;2	y	0.01	2	259.5	2	517;2	y	0.00	0	247.5	0	493;2	n	ENSMUSG00000033916.6	Chmp2a	chr7	protein_coding	charged multivesicular body protein 2A
known_NIR_16707	chr7	12766277	12767756	-	12766277;12766748	12766362;12767756	ES	ENSMUST00000209487.2	known	0.00	1	439.0	1	399;479	n	0.00	0	505.5	0	496;515	n	0.00	0	667.0	0	597;737	n	0.00	0	420.0	0	374;466	n	0.00	0	588.0	0	524;652	n	0.00	0	378.5	0	358;399	n	0.00	1	641.0	1	634;648	n	0.00	0	294.5	0	257;332	n	0.00	0	403.0	0	366;440	n	0.00	2	646.5	2	572;721	y	0.00	2	553.5	2	517;590	y	0.00	0	551.5	0	493;610	n	ENSMUSG00000033916.6	Chmp2a	chr7	protein_coding	charged multivesicular body protein 2A
known_NIR_16708	chr7	12766492	12766719	-	12766492	12766569	A5SS	ENSMUST00000210587.2	known	0.01	4	486	4	486	y	0.01	6	530	6	530	y	0.01	7	646	7	646	y	0.00	2	480	2	480	y	0.01	5	747	5	747	y	0.01	5	445	5	445	y	0.01	4	686	4	686	y	0.00	1	319	1	319	n	0.01	5	491	5	491	y	0.02	13	702	13	702	y	0.01	6	587	6	587	y	0.01	5	609	5	609	y	ENSMUSG00000033916.6	Chmp2a	chr7	protein_coding	charged multivesicular body protein 2A
known_NIR_16709	chr7	12766492	12767756	-	12766492;12766748	12766569;12767756	ES	ENSMUST00000210587.2	known	0.00	0	482.5	0	486;479	n	0.00	2	522.5	2	530;515	y	0.01	4	691.5	4	646;737	y	0.00	1	473.0	1	480;466	n	0.00	2	699.5	2	747;652	y	0.01	3	422.0	3	445;399	y	0.00	3	667.0	3	686;648	y	0.00	1	325.5	1	319;332	n	0.00	0	465.5	0	491;440	n	0.00	2	711.5	2	702;721	y	0.00	2	588.5	2	587;590	y	0.00	2	609.5	2	609;610	y	ENSMUSG00000033916.6	Chmp2a	chr7	protein_coding	charged multivesicular body protein 2A
known_NIR_16710	chr7	12766492	12767756	-	12766748	12767756	A3SS	ENSMUST00000209487.2	known	0.00	0	479	0	479	n	0.00	2	515	2	515	y	0.01	4	737	4	737	y	0.00	1	466	1	466	n	0.00	2	652	2	652	y	0.01	3	399	3	399	y	0.00	3	648	3	648	y	0.00	1	332	1	332	n	0.00	0	440	0	440	n	0.00	2	721	2	721	y	0.00	2	590	2	590	y	0.00	2	610	2	610	y	ENSMUSG00000033916.6	Chmp2a	chr7	protein_coding	charged multivesicular body protein 2A
known_NIR_16711	chr7	12766492;12766748	12766719;12767756	-	12766492	12767756	cassetteExon	ENSMUST00000211344.2	known	1.00	241.5	0	4;479	0	n	0.99	260.5	2	6;515	2	y	0.99	372.0	4	7;737	4	y	1.00	234.0	1	2;466	1	n	0.99	328.5	2	5;652	2	y	0.99	202.0	3	5;399	3	y	0.99	326.0	3	4;648	3	y	0.99	166.5	1	1;332	1	n	1.00	222.5	0	5;440	0	n	0.99	367.0	2	13;721	2	y	0.99	298.0	2	6;590	2	y	0.99	307.5	2	5;610	2	y	ENSMUSG00000033916.6	Chmp2a	chr7	protein_coding	charged multivesicular body protein 2A
known_NIR_16712	chr7	12767969	12768562	-	12767969	12768429	A5SS	ENSMUST00000210587.2	known	0.92	257	22	257	22	y	0.95	309	17	309	17	y	0.86	297	48	297	48	y	0.95	297	16	297	16	y	0.91	318	32	318	32	y	0.89	220	26	220	26	y	0.93	359	27	359	27	y	0.86	182	30	182	30	y	0.95	250	14	250	14	y	0.91	366	38	366	38	y	0.95	326	17	326	17	y	0.94	300	20	300	20	y	ENSMUSG00000033916.6	Chmp2a	chr7	protein_coding	charged multivesicular body protein 2A
known_NIR_16713	chr7	127700728	127700809	+	127700728	127700806	A3SS	ENSMUST00000064821.14	known	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.50	11	11	11	11	y	0.50	1	1	1	1	n	0.50	3	3	3	3	n	0.36	4	7	4	7	y	0.40	4	6	4	6	y	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000030786.19	Itgam	chr7	protein_coding	integrin alpha M
known_NIR_16714	chr7	12770587	12771143	-	12770587	12771548	A5SS	ENSMUST00000165394.9	known	0.01	1	181	1	181	n	0.00	0	220	0	220	n	0.00	0	313	0	313	n	0.00	0	191	0	191	n	0.00	0	264	0	264	n	0.01	2	158	2	158	y	0.00	0	305	0	305	n	0.00	0	101	0	101	n	0.00	0	166	0	166	n	0.00	0	286	0	286	n	0.00	0	269	0	269	n	0.00	0	252	0	252	n	ENSMUSG00000005575.17	Ube2m	chr7	protein_coding	ubiquitin-conjugating enzyme E2M
known_NIR_16715	chr7	12770587	12771482	-	12770587	12771548	A5SS	ENSMUST00000165394.9	known	0.01	2	181	2	181	y	0.01	2	220	2	220	y	0.02	6	313	6	313	y	0.04	7	191	7	191	y	0.01	3	264	3	264	y	0.00	0	158	0	158	n	0.00	0	305	0	305	n	0.03	3	101	3	101	y	0.02	3	166	3	166	y	0.01	2	286	2	286	y	0.00	1	269	1	269	n	0.00	0	252	0	252	n	ENSMUSG00000005575.17	Ube2m	chr7	protein_coding	ubiquitin-conjugating enzyme E2M
known_NIR_16716	chr7	127873895	127875258	-	127873875	127875258	A3SS	ENSMUST00000033044.16	known	0.00	0	26	0	26	n	0.00	0	26	0	26	n	0.00	0	35	0	35	n	0.00	0	28	0	28	n	0.00	0	43	0	43	n	0.12	3	23	3	23	y	0.00	0	47	0	47	n	0.00	0	33	0	33	n	0.00	0	21	0	21	n	0.00	0	51	0	51	n	0.00	0	40	0	40	n	0.00	0	25	0	25	n	ENSMUSG00000030780.16	Rusf1	chr7	protein_coding	RUS family member 1
known_NIR_16717	chr7	128045670;128045824	128045766;128046005	-	128045670	128046005	cassetteExon	ENSMUST00000106226.9	known	0.05	4.5	81	2;7	81	y	0.04	3.5	79	4;3	79	y	0.04	4.0	105	5;3	105	y	0.02	1.5	75	3;0	75	n	0.01	1.0	108	0;2	108	n	0.00	0.0	61	0;0	61	n	0.04	3.5	94	5;2	94	y	0.03	1.5	57	3;0	57	n	0.02	1.5	72	2;1	72	n	0.03	3.0	86	4;2	86	y	0.02	2.0	102	2;2	102	y	0.04	3.5	83	4;3	83	y	ENSMUSG00000030846.16	Tial1	chr7	protein_coding	Tia1 cytotoxic granule-associated RNA binding protein-like 1
known_NIR_16718	chr7	128047994;128048522	128048455;128049845	-	128047994	128049845	cassetteExon	ENSMUST00000106226.9	known	0.10	6.0	54	7;5	54	y	0.08	6.5	71	10;3	71	y	0.09	9.0	87	10;8	87	y	0.08	5.5	63	5;6	63	y	0.08	7.0	79	9;5	79	y	0.08	3.0	36	4;2	36	y	0.11	11.5	89	15;8	89	y	0.04	1.5	38	2;1	38	n	0.10	8.0	70	7;9	70	y	0.08	8.0	90	9;7	90	y	0.04	2.5	62	4;1	62	n	0.09	8.5	84	8;9	84	y	ENSMUSG00000030846.16	Tial1	chr7	protein_coding	Tia1 cytotoxic granule-associated RNA binding protein-like 1
known_NIR_16719	chr7	128047994;128048831	128048455;128049845	-	128047994	128049845	cassetteExon	ENSMUST00000106226.9	known	0.07	4.0	54	7;1	54	n	0.07	5.5	71	10;1	71	n	0.07	7.0	87	10;4	87	y	0.05	3.0	63	5;1	63	n	0.05	4.5	79	9;0	79	n	0.06	2.5	36	4;1	36	n	0.08	8.0	89	15;1	89	n	0.04	1.5	38	2;1	38	n	0.05	3.5	70	7;0	70	n	0.05	4.5	90	9;0	90	n	0.05	3.0	62	4;2	62	y	0.07	6.0	84	8;4	84	y	ENSMUSG00000030846.16	Tial1	chr7	protein_coding	Tia1 cytotoxic granule-associated RNA binding protein-like 1
known_NIR_16720	chr7	128048522	128049845	-	128048831	128049845	A3SS	ENSMUST00000123666.8	known	0.83	5	1	5	1	n	0.75	3	1	3	1	n	0.67	8	4	8	4	y	0.86	6	1	6	1	n	1.00	5	0	5	0	n	0.67	2	1	2	1	n	0.89	8	1	8	1	n	0.50	1	1	1	1	n	1.00	9	0	9	0	n	1.00	7	0	7	0	n	0.33	1	2	1	2	n	0.69	9	4	9	4	y	ENSMUSG00000030846.16	Tial1	chr7	protein_coding	Tia1 cytotoxic granule-associated RNA binding protein-like 1
known_NIR_16721	chr7	128048522;128048831	128048763;128049845	-	128048522	128049845	cassetteExon	ENSMUST00000133089.8	known	0.09	0.5	5	0;1	5	n	0.14	0.5	3	0;1	3	n	0.30	3.5	8	3;4	8	y	0.14	1.0	6	1;1	6	n	0.00	0.0	5	0;0	5	n	0.20	0.5	2	0;1	2	n	0.06	0.5	8	0;1	8	n	0.33	0.5	1	0;1	1	n	0.00	0.0	9	0;0	9	n	0.00	0.0	7	0;0	7	n	0.50	1.0	1	0;2	1	n	0.22	2.5	9	1;4	9	n	ENSMUSG00000030846.16	Tial1	chr7	protein_coding	Tia1 cytotoxic granule-associated RNA binding protein-like 1
known_NIR_16722	chr7	128050443	128056660	-	128050494	128056660	A3SS	ENSMUST00000106226.9	known	0.78	53	15	53	15	y	0.73	43	16	43	16	y	0.71	54	22	54	22	y	0.85	83	15	83	15	y	0.84	107	21	107	21	y	0.84	49	9	49	9	y	0.80	69	17	69	17	y	0.79	34	9	34	9	y	0.86	74	12	74	12	y	0.86	101	17	101	17	y	0.87	61	9	61	9	y	0.87	111	17	111	17	y	ENSMUSG00000030846.16	Tial1	chr7	protein_coding	Tia1 cytotoxic granule-associated RNA binding protein-like 1
known_NIR_16723	chr7	128056756;128060380	128060321;128062849	-	128056756	128062849	cassetteExon	ENSMUST00000106226.9	known	0.01	0.5	41	1;0	41	n	0.04	1.5	40	0;3	40	n	0.07	5.0	65	8;2	65	y	0.07	4.5	58	7;2	58	y	0.14	10.5	64	14;7	64	y	0.01	0.5	39	0;1	39	n	0.10	7.0	63	9;5	63	y	0.11	5.0	39	6;4	39	y	0.08	6.0	66	6;6	66	y	0.15	11.5	64	16;7	64	y	0.09	6.0	61	7;5	61	y	0.20	21.5	88	27;16	88	y	ENSMUSG00000030846.16	Tial1	chr7	protein_coding	Tia1 cytotoxic granule-associated RNA binding protein-like 1
known_NIR_16724	chr7	129226081	129226880	+	129226081;129226543	129226429;129226880	ES	ENSMUST00000084519.7	known	0.03	1	38.0	1	38;38	n	0.00	0	28.0	0	25;31	n	0.06	3	45.0	3	40;50	y	0.02	1	57.0	1	44;70	n	0.00	0	63.0	0	47;79	n	0.05	1	19.0	1	20;18	n	0.05	3	53.0	3	44;62	y	0.00	0	28.5	0	27;30	n	0.08	3	33.0	3	23;43	y	0.02	1	46.5	1	38;55	n	0.00	0	40.0	0	42;38	n	0.02	1	57.0	1	52;62	n	ENSMUSG00000042055.14	Wdr11	chr7	protein_coding	WD repeat domain 11
known_NIR_16725	chr7	129765945	129769433	-	129765853	129769433	A3SS	ENSMUST00000120187.9	known	0.26	12	34	12	34	y	0.29	16	40	16	40	y	0.32	25	54	25	54	y	0.39	19	30	19	30	y	0.33	17	35	17	35	y	0.36	14	25	14	25	y	0.34	21	40	21	40	y	0.37	19	33	19	33	y	0.57	23	17	23	17	y	0.41	28	41	28	41	y	0.32	12	25	12	25	y	0.28	23	60	23	60	y	ENSMUSG00000030849.19	Fgfr2	chr7	protein_coding	fibroblast growth factor receptor 2
known_NIR_16726	chr7	129787110	129797908	-	129787110	129797902	A5SS	ENSMUST00000120187.9	known	0.00	0	23	0	23	n	0.17	5	24	5	24	y	0.21	11	42	11	42	y	0.18	9	40	9	40	y	0.12	5	38	5	38	y	0.09	3	29	3	29	y	0.19	7	30	7	30	y	0.12	2	14	2	14	y	0.12	2	14	2	14	y	0.18	9	42	9	42	y	0.16	4	21	4	21	y	0.18	8	36	8	36	y	ENSMUSG00000030849.19	Fgfr2	chr7	protein_coding	fibroblast growth factor receptor 2
known_NIR_16727	chr7	129798104;129800293	129800149;129802713	-	129798104;129801635	129801488;129802713	MXE	ENSMUST00000120187.9	known	0.11	2.5	20.5	2;3	25;16	y	0.06	1.5	22.5	2;1	25;20	n	0.27	12.0	32.5	13;11	38;27	y	0.08	2.5	28.5	4;1	28;29	n	0.13	4.5	30.0	3;6	33;27	y	0.14	3.5	21.5	5;2	29;14	y	0.13	3.0	20.5	5;1	24;17	n	0.17	4.0	20.0	7;1	25;15	n	0.06	1.0	14.5	0;2	17;12	n	0.10	4.0	38.0	4;4	45;31	y	0.10	2.0	18.0	1;3	20;16	n	0.04	1.5	37.0	2;1	45;29	n	ENSMUSG00000030849.19	Fgfr2	chr7	protein_coding	fibroblast growth factor receptor 2
known_NIR_16728	chr7	129800293	129802713	-	129801635	129802713	3pMXE	ENSMUST00000127091.2	known	0.16	3	16	3	16	y	0.05	1	20	1	20	n	0.29	11	27	11	27	y	0.03	1	29	1	29	n	0.18	6	27	6	27	y	0.12	2	14	2	14	y	0.06	1	17	1	17	n	0.06	1	15	1	15	n	0.14	2	12	2	12	y	0.11	4	31	4	31	y	0.16	3	16	3	16	y	0.03	1	29	1	29	n	ENSMUSG00000030849.19	Fgfr2	chr7	protein_coding	fibroblast growth factor receptor 2
known_NIR_16729	chr7	129830522;129843007	129842930;129863479	-	129830522	129863479	cassetteExon	ENSMUST00000120187.9	known	0.43	6.0	8	9;3	8	y	0.78	14.5	4	21;8	4	y	0.67	16.5	8	16;17	8	y	0.61	18.5	12	25;12	12	y	0.84	20.5	4	25;16	4	y	0.68	17.0	8	21;13	8	y	0.57	13.0	10	15;11	10	y	0.56	10.0	8	15;5	8	y	0.73	16.5	6	22;11	6	y	0.53	12.5	11	17;8	11	y	0.50	11.0	11	15;7	11	y	0.59	17.0	12	21;13	12	y	ENSMUSG00000030849.19	Fgfr2	chr7	protein_coding	fibroblast growth factor receptor 2
known_NIR_16730	chr7	129843007	129863479	-	129843007;129844374	129844108;129863479	ES	ENSMUST00000153166.8	known	0.32	3	6.5	3	7;6	y	0.67	8	4.0	8	8;0	n	0.53	17	15.0	17	20;10	y	0.46	12	14.0	12	17;11	y	0.73	16	6.0	16	10;2	y	0.59	13	9.0	13	10;8	y	0.58	11	8.0	11	8;8	y	0.43	5	6.5	5	7;6	y	0.54	11	9.5	11	9;10	y	0.46	8	9.5	8	10;9	y	0.40	7	10.5	7	11;10	y	0.36	13	23.0	13	24;22	y	ENSMUSG00000030849.19	Fgfr2	chr7	protein_coding	fibroblast growth factor receptor 2
known_NIR_16731	chr7	129844374	129863479	-	129830522	129863479	A3SS	ENSMUST00000120187.9	known	0.43	6	8	6	8	y	0.00	0	4	0	4	n	0.56	10	8	10	8	y	0.48	11	12	11	12	y	0.33	2	4	2	4	n	0.50	8	8	8	8	y	0.44	8	10	8	10	y	0.43	6	8	6	8	y	0.62	10	6	10	6	y	0.45	9	11	9	11	y	0.48	10	11	10	11	y	0.65	22	12	22	12	y	ENSMUSG00000030849.19	Fgfr2	chr7	protein_coding	fibroblast growth factor receptor 2
known_NIR_16732	chr7	130083445;130106552	130106424;130109212	-	130083445;130105580	130105452;130109212	MXE	ENSMUST00000035458.15	known	0.42	8.5	11.5	9;8	15;8	y	0.67	3.0	1.5	2;4	3;0	n	0.48	12.5	13.5	13;12	19;8	y	0.59	12.0	8.5	11;13	10;7	y	0.42	10.0	14.0	9;11	19;9	y	0.58	5.5	4.0	6;5	5;3	y	0.50	7.0	7.0	8;6	10;4	y	0.50	7.5	7.5	6;9	11;4	y	0.45	7.5	9.0	8;7	12;6	y	0.56	11.5	9.0	11;12	12;6	y	0.54	7.0	6.0	8;6	3;9	y	0.58	14.0	10.0	14;14	11;9	y	ENSMUSG00000030850.18	Ate1	chr7	protein_coding	arginyltransferase 1
known_NIR_16733	chr7	130105580	130109212	-	130106552	130109212	A3SS&ES	ENSMUST00000207041.2	known	0.50	8	8	8	8	y	0.00	0	4	0	4	n	0.40	8	12	8	12	y	0.35	7	13	7	13	y	0.45	9	11	9	11	y	0.38	3	5	3	5	n	0.40	4	6	4	6	y	0.31	4	9	4	9	y	0.46	6	7	6	7	y	0.33	6	12	6	12	y	0.60	9	6	9	6	y	0.39	9	14	9	14	y	ENSMUSG00000030850.18	Ate1	chr7	protein_coding	arginyltransferase 1
known_NIR_16734	chr7	130117898	130121607	-	130117898	130121086	5pMXE	ENSMUST00000035458.15	known	0.38	3	5	3	5	n	0.33	1	2	1	2	n	0.55	12	10	12	10	y	0.32	7	15	7	15	y	0.24	6	19	6	19	y	0.47	8	9	8	9	y	0.14	3	18	3	18	y	0.22	4	14	4	14	y	0.00	0	5	0	5	n	0.19	3	13	3	13	y	0.54	7	6	7	6	y	0.36	8	14	8	14	y	ENSMUSG00000030850.18	Ate1	chr7	protein_coding	arginyltransferase 1
known_NIR_16735	chr7	130198149	130203567	+	130179246	130203567	A5SS	ENSMUST00000207918.2	known	0.92	12	1	12	1	n	1.00	37	0	37	0	n	0.96	98	4	98	4	y	1.00	27	0	27	0	n	1.00	72	0	72	0	n	0.98	58	1	58	1	n	1.00	78	0	78	0	n	1.00	47	0	47	0	n	0.95	21	1	21	1	n	1.00	34	0	34	0	n	1.00	10	0	10	0	n	1.00	14	0	14	0	n	ENSMUSG00000030852.19	Tacc2	chr7	protein_coding	transforming, acidic coiled-coil containing protein 2
known_NIR_16736	chr7	130203667	130264746	+	130203667	130223451	3pMXE	ENSMUST00000215492.2	known	1.00	6	0	6	0	n	0.67	8	4	8	4	y	0.60	42	28	42	28	y	0.93	13	1	13	1	n	0.71	37	15	37	15	y	0.66	31	16	31	16	y	0.30	23	53	23	53	y	0.91	20	2	20	2	y	0.94	15	1	15	1	n	0.82	14	3	14	3	y	0.43	6	8	6	8	y	0.71	5	2	5	2	n	ENSMUSG00000030852.19	Tacc2	chr7	protein_coding	transforming, acidic coiled-coil containing protein 2
known_NIR_16737	chr7	130203667	130264746	+	130203667;130228571	130223451;130264746	ES	ENSMUST00000084513.12	known	0.80	6	1.5	6	0;3	n	0.73	8	3.0	8	4;2	y	0.73	42	15.5	42	28;3	y	0.93	13	1.0	13	1;1	n	0.80	37	9.0	37	15;3	y	0.78	31	8.5	31	16;1	n	0.44	23	29.0	23	53;5	y	0.93	20	1.5	20	2;1	n	0.97	15	0.5	15	1;0	n	0.80	14	3.5	14	3;4	y	0.60	6	4.0	6	8;0	n	0.77	5	1.5	5	2;1	n	ENSMUSG00000030852.19	Tacc2	chr7	protein_coding	transforming, acidic coiled-coil containing protein 2
known_NIR_16738	chr7	130228571	130264746	+	130203667	130264746	A5SS	ENSMUST00000207789.2	known	0.33	3	6	3	6	n	0.20	2	8	2	8	y	0.07	3	42	3	42	y	0.07	1	13	1	13	n	0.07	3	37	3	37	y	0.03	1	31	1	31	n	0.18	5	23	5	23	y	0.05	1	20	1	20	n	0.00	0	15	0	15	n	0.22	4	14	4	14	y	0.00	0	6	0	6	n	0.17	1	5	1	5	n	ENSMUSG00000030852.19	Tacc2	chr7	protein_coding	transforming, acidic coiled-coil containing protein 2
known_NIR_16739	chr7	130228571	130264746	+	130228571;130229229	130229128;130264746	ES	ENSMUST00000207918.2	known	0.46	3	3.5	3	4;3	y	0.17	2	9.5	2	12;7	y	0.07	3	39.0	3	37;41	y	0.11	1	8.5	1	14;3	n	0.09	3	30.0	3	34;26	y	0.03	1	33.0	1	34;32	n	0.07	5	71.0	5	82;60	y	0.08	1	11.5	1	14;9	n	0.00	0	4.5	0	5;4	n	0.24	4	13.0	4	18;8	y	0.00	0	4.5	0	7;2	n	0.18	1	4.5	1	3;6	n	ENSMUSG00000030852.19	Tacc2	chr7	protein_coding	transforming, acidic coiled-coil containing protein 2
known_NIR_16740	chr7	130229229	130264746	+	130203667	130264746	A5SS	ENSMUST00000207789.2	known	0.33	3	6	3	6	n	0.47	7	8	7	8	y	0.49	41	42	41	42	y	0.19	3	13	3	13	y	0.41	26	37	26	37	y	0.51	32	31	32	31	y	0.72	60	23	60	23	y	0.31	9	20	9	20	y	0.21	4	15	4	15	y	0.36	8	14	8	14	y	0.25	2	6	2	6	n	0.55	6	5	6	5	y	ENSMUSG00000030852.19	Tacc2	chr7	protein_coding	transforming, acidic coiled-coil containing protein 2
known_NIR_16741	chr7	130248160	130276332	+	130264871	130276332	A5SS&ES	ENSMUST00000207918.2	known	0.00	0	6	0	6	n	0.00	0	25	0	25	n	0.00	0	90	0	90	n	0.00	0	22	0	22	n	0.03	2	65	2	65	y	0.00	0	65	0	65	n	0.00	0	118	0	118	n	0.00	0	35	0	35	n	0.00	0	11	0	11	n	0.00	0	29	0	29	n	0.00	0	7	0	7	n	0.00	0	18	0	18	n	ENSMUSG00000030852.19	Tacc2	chr7	protein_coding	transforming, acidic coiled-coil containing protein 2
known_NIR_16742	chr7	130331558	130335248	+	130331558	130333261	A3SS&ES	ENSMUST00000084513.12	known	1.00	2	0	2	0	n	-	-	-	-	-	-	0.71	5	2	5	2	n	1.00	2	0	2	0	n	0.33	1	2	1	2	n	0.50	2	2	2	2	n	0.71	15	6	15	6	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000030852.19	Tacc2	chr7	protein_coding	transforming, acidic coiled-coil containing protein 2
known_NIR_16743	chr7	130331558	130335248	+	130331558	130335236	A3SS	ENSMUST00000207789.2	known	0.10	2	18	2	18	y	0.00	0	50	0	50	n	0.03	5	163	5	163	y	0.03	2	70	2	70	y	0.01	1	85	1	85	n	0.02	2	95	2	95	y	0.07	15	215	15	215	y	0.02	1	63	1	63	n	0.02	1	41	1	41	n	0.00	0	43	0	43	n	0.04	1	27	1	27	n	0.03	1	35	1	35	n	ENSMUSG00000030852.19	Tacc2	chr7	protein_coding	transforming, acidic coiled-coil containing protein 2
known_NIR_16744	chr7	130331558;130333296	130333261;130335236	+	130331558	130335236	cassetteExon	ENSMUST00000207789.2	known	0.00	0.0	18	0;0	18	n	0.00	0.0	50	0;0	50	n	0.02	4.0	163	2;6	163	y	0.01	0.5	70	0;1	70	n	0.05	4.5	85	2;7	85	y	0.02	2.0	95	2;2	95	y	0.03	6.5	215	6;7	215	y	0.02	1.5	63	0;3	63	n	0.00	0.0	41	0;0	41	n	0.00	0.0	43	0;0	43	n	0.00	0.0	27	0;0	27	n	0.00	0.0	35	0;0	35	n	ENSMUSG00000030852.19	Tacc2	chr7	protein_coding	transforming, acidic coiled-coil containing protein 2
known_NIR_16745	chr7	130336958	130341542	+	130336880	130341542	A5SS	ENSMUST00000207789.2	known	0.00	0	49	0	49	n	0.01	1	68	1	68	n	0.01	4	267	4	267	y	0.07	6	76	6	76	y	0.02	3	144	3	144	y	0.01	1	128	1	128	n	0.35	93	170	93	170	y	0.01	1	111	1	111	n	0.00	0	44	0	44	n	0.00	0	52	0	52	n	0.00	0	37	0	37	n	0.00	0	32	0	32	n	ENSMUSG00000030852.19	Tacc2	chr7	protein_coding	transforming, acidic coiled-coil containing protein 2
known_NIR_16746	chr7	130336973	130341542	+	130336880	130341542	A5SS	ENSMUST00000207789.2	known	0.00	0	49	0	49	n	0.00	0	68	0	68	n	0.00	0	267	0	267	n	0.00	0	76	0	76	n	0.00	0	144	0	144	n	0.00	0	128	0	128	n	0.04	7	170	7	170	y	0.00	0	111	0	111	n	0.00	0	44	0	44	n	0.00	0	52	0	52	n	0.00	0	37	0	37	n	0.00	0	32	0	32	n	ENSMUSG00000030852.19	Tacc2	chr7	protein_coding	transforming, acidic coiled-coil containing protein 2
known_NIR_16747	chr7	130336973	130341542	+	130336958	130341542	A5SS	ENSMUST00000084513.12	known	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.07	7	93	7	93	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030852.19	Tacc2	chr7	protein_coding	transforming, acidic coiled-coil containing protein 2
known_NIR_16748	chr7	130344031	130345274	+	130344031	130352920	A3SS	ENSMUST00000207789.2	known	0.04	2	45	2	45	y	0.00	0	63	0	63	n	0.00	0	197	0	197	n	0.01	1	81	1	81	n	0.00	0	136	0	136	n	0.00	0	142	0	142	n	0.38	104	167	104	167	y	0.00	0	77	0	77	n	0.00	0	42	0	42	n	0.00	0	66	0	66	n	0.00	0	34	0	34	n	0.00	0	32	0	32	n	ENSMUSG00000030852.19	Tacc2	chr7	protein_coding	transforming, acidic coiled-coil containing protein 2
known_NIR_16749	chr7	130346346	130352920	+	130344031	130352920	A5SS	ENSMUST00000207789.2	known	0.02	1	45	1	45	n	0.00	0	63	0	63	n	0.00	0	197	0	197	n	0.00	0	81	0	81	n	0.00	0	136	0	136	n	0.00	0	142	0	142	n	0.41	115	167	115	167	y	0.00	0	77	0	77	n	0.02	1	42	1	42	n	0.00	0	66	0	66	n	0.00	0	34	0	34	n	0.00	0	32	0	32	n	ENSMUSG00000030852.19	Tacc2	chr7	protein_coding	transforming, acidic coiled-coil containing protein 2
known_NIR_16750	chr7	130355391	130360897	+	130355391	130360895	A3SS	ENSMUST00000207789.2	known	0.00	0	79	0	79	n	0.00	0	136	0	136	n	0.00	0	306	0	306	n	0.00	0	97	0	97	n	0.00	0	194	0	194	n	0.02	3	182	3	182	y	0.00	0	445	0	445	n	0.00	0	125	0	125	n	0.00	0	62	0	62	n	0.00	0	96	0	96	n	0.00	0	61	0	61	n	0.00	0	65	0	65	n	ENSMUSG00000030852.19	Tacc2	chr7	protein_coding	transforming, acidic coiled-coil containing protein 2
known_NIR_16751	chr7	130361765	130362906	+	130361765	130365984	A3SS	ENSMUST00000207789.2	known	0.00	0	43	0	43	n	0.01	1	123	1	123	n	0.01	3	329	3	329	y	0.00	0	101	0	101	n	0.01	2	212	2	212	y	0.01	1	164	1	164	n	0.01	5	388	5	388	y	0.02	3	118	3	118	y	0.00	0	72	0	72	n	0.03	2	69	2	69	y	0.04	2	50	2	50	y	0.03	2	61	2	61	y	ENSMUSG00000030852.19	Tacc2	chr7	protein_coding	transforming, acidic coiled-coil containing protein 2
known_NIR_16752	chr7	130467730	130479464	+	130467713	130479464	A5SS	ENSMUST00000120441.8	known	0.40	2	3	2	3	n	0.67	2	1	2	1	n	0.10	3	26	3	26	y	0.00	0	4	0	4	n	0.27	4	11	4	11	y	0.18	2	9	2	9	y	0.22	2	7	2	7	n	0.00	0	9	0	9	n	0.12	1	7	1	7	n	0.20	3	12	3	12	y	0.17	1	5	1	5	n	0.17	1	5	1	5	n	ENSMUSG00000040268.18	Plekha1	chr7	protein_coding	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1
known_NIR_16753	chr7	130484116	130487133	+	130484116	130499055	A3SS	ENSMUST00000048180.12	known	1.00	7	0	7	0	n	1.00	4	0	4	0	n	0.95	37	2	37	2	y	1.00	10	0	10	0	n	1.00	25	0	25	0	n	1.00	19	0	19	0	n	1.00	14	0	14	0	n	1.00	11	0	11	0	n	1.00	10	0	10	0	n	1.00	19	0	19	0	n	1.00	6	0	6	0	n	1.00	15	0	15	0	n	ENSMUSG00000040268.18	Plekha1	chr7	protein_coding	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1
known_NIR_16754	chr7	130494008	130499055	+	130484116	130499055	A5SS	ENSMUST00000048180.12	known	1.00	11	0	11	0	n	1.00	3	0	3	0	n	0.92	23	2	23	2	y	1.00	11	0	11	0	n	1.00	16	0	16	0	n	1.00	15	0	15	0	n	1.00	15	0	15	0	n	1.00	11	0	11	0	n	1.00	4	0	4	0	n	1.00	8	0	8	0	n	1.00	4	0	4	0	n	1.00	12	0	12	0	n	ENSMUSG00000040268.18	Plekha1	chr7	protein_coding	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1
known_NIR_16755	chr7	130510155	130512562	+	130510155	130511318	3pMXE	ENSMUST00000136963.8	known	0.50	3	3	3	3	n	0.33	1	2	1	2	n	0.28	5	13	5	13	y	0.40	2	3	2	3	n	0.24	4	13	4	13	y	0.05	1	18	1	18	n	0.14	2	12	2	12	y	0.10	1	9	1	9	n	0.75	6	2	6	2	n	0.43	3	4	3	4	n	0.33	2	4	2	4	n	1.00	3	0	3	0	n	ENSMUSG00000040268.18	Plekha1	chr7	protein_coding	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1
known_NIR_16756	chr7	130510155	130512562	+	130510155;130511358	130511318;130512562	ES	ENSMUST00000075181.11	known	0.55	3	2.5	3	3;2	n	0.29	1	2.5	1	2;3	n	0.26	5	14.5	5	13;16	y	0.44	2	2.5	2	3;2	n	0.27	4	11.0	4	13;9	y	0.07	1	13.5	1	18;9	n	0.17	2	10.0	2	12;8	y	0.14	1	6.0	1	9;3	n	0.75	6	2.0	6	2;2	y	0.50	3	3.0	3	4;2	n	0.40	2	3.0	2	4;2	n	1.00	3	0.0	3	0;0	n	ENSMUSG00000040268.18	Plekha1	chr7	protein_coding	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1
known_NIR_16757	chr7	130510155	130512562	+	130510155;130511465	130511318;130512562	ES	ENSMUST00000120441.8	known	0.60	3	2.0	3	3;1	n	0.33	1	2.0	1	2;2	n	0.36	5	9.0	5	13;5	y	0.44	2	2.5	2	3;2	n	0.35	4	7.5	4	13;2	y	0.10	1	9.0	1	18;0	n	0.25	2	6.0	2	12;0	n	0.18	1	4.5	1	9;0	n	0.86	6	1.0	6	2;0	n	0.60	3	2.0	3	4;0	n	0.50	2	2.0	2	4;0	n	1.00	3	0.0	3	0;0	n	ENSMUSG00000040268.18	Plekha1	chr7	protein_coding	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1
known_NIR_16758	chr7	130510155;130511388	130511318;130512562	+	130510155	130512562	cassetteExon	ENSMUST00000048180.12	known	0.57	4.0	3	3;5	3	y	0.67	2.0	1	2;2	1	n	0.62	8.0	5	13;3	5	y	0.56	2.5	2	3;2	2	n	0.68	8.5	4	13;4	4	y	0.90	9.5	1	18;1	1	n	0.75	6.0	2	12;0	2	n	0.82	4.5	1	9;0	1	n	0.25	2.0	6	2;2	6	y	0.50	3.0	3	4;2	3	n	0.50	2.0	2	4;0	2	n	0.14	0.5	3	0;1	3	n	ENSMUSG00000040268.18	Plekha1	chr7	protein_coding	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1
known_NIR_16759	chr7	130511358	130512562	+	130511465	130512562	A5SS	ENSMUST00000120441.8	known	0.67	2	1	2	1	n	0.60	3	2	3	2	n	0.76	16	5	16	5	y	0.50	2	2	2	2	n	0.82	9	2	9	2	y	1.00	9	0	9	0	n	1.00	8	0	8	0	n	1.00	3	0	3	0	n	1.00	2	0	2	0	n	1.00	2	0	2	0	n	1.00	2	0	2	0	n	-	-	-	-	-	-	ENSMUSG00000040268.18	Plekha1	chr7	protein_coding	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1
known_NIR_16760	chr7	130511388	130512562	+	130511358	130512562	A5SS	ENSMUST00000075181.11	known	0.71	5	2	5	2	n	0.40	2	3	2	3	n	0.16	3	16	3	16	y	0.50	2	2	2	2	n	0.31	4	9	4	9	y	0.10	1	9	1	9	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.50	2	2	2	2	n	0.50	2	2	2	2	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	ENSMUSG00000040268.18	Plekha1	chr7	protein_coding	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1
known_NIR_16761	chr7	130721407;130722601	130722520;130722798	+	130721407	130722798	cassetteExon	ENSMUST00000084509.7	known	-	-	-	-	-	-	0.00	0.0	1	0;0	1	n	0.17	1.0	5	2;0	5	n	-	-	-	-	-	-	0.07	5.5	74	6;5	74	y	-	-	-	-	-	-	0.11	15.0	126	13;17	126	y	0.12	6.5	46	4;9	46	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0.0	1	0;0	1	n	-	-	-	-	-	-	ENSMUSG00000047517.14	Dmbt1	chr7	protein_coding	deleted in malignant brain tumors 1
known_NIR_16762	chr7	130973118	130975794	+	130973118	130975265	3pMXE	ENSMUST00000207933.2	known	0.30	8	19	8	19	y	0.29	9	22	9	22	y	0.00	0	12	0	12	n	0.32	8	17	8	17	y	0.05	2	35	2	35	y	0.18	3	14	3	14	y	0.19	6	26	6	26	y	0.25	3	9	3	9	y	0.32	7	15	7	15	y	0.11	4	33	4	33	y	0.19	5	21	5	21	y	0.25	6	18	6	18	y	ENSMUSG00000063179.14	Pstk	chr7	protein_coding	phosphoseryl-tRNA kinase
known_NIR_16763	chr7	130973118	130975794	+	130973118;130975559	130975265;130975794	ES	ENSMUST00000075610.13	known	0.21	8	31.0	8	19;43	y	0.25	9	26.5	9	22;31	y	0.00	0	16.5	0	12;21	n	0.29	8	20.0	8	17;23	y	0.06	2	31.0	2	35;27	y	0.16	3	16.0	3	14;18	y	0.18	6	27.5	6	26;29	y	0.17	3	15.0	3	9;21	y	0.28	7	18.0	7	15;21	y	0.11	4	33.5	4	33;34	y	0.14	5	30.0	5	21;39	y	0.16	6	31.5	6	18;45	y	ENSMUSG00000063179.14	Pstk	chr7	protein_coding	phosphoseryl-tRNA kinase
known_NIR_16764	chr7	130973118	130975794	+	130975559	130975794	5pMXE	ENSMUST00000128092.3	known	0.16	8	43	8	43	y	0.23	9	31	9	31	y	0.00	0	21	0	21	n	0.26	8	23	8	23	y	0.07	2	27	2	27	y	0.14	3	18	3	18	y	0.17	6	29	6	29	y	0.12	3	21	3	21	y	0.25	7	21	7	21	y	0.11	4	34	4	34	y	0.11	5	39	5	39	y	0.12	6	45	6	45	y	ENSMUSG00000063179.14	Pstk	chr7	protein_coding	phosphoseryl-tRNA kinase
known_NIR_16765	chr7	130986322	130994229	+	130986322	130989347	3pMXE	ENSMUST00000075610.13	known	0.07	2	27	2	27	y	0.00	0	32	0	32	n	0.00	0	21	0	21	n	0.00	0	34	0	34	n	0.06	2	32	2	32	y	0.00	0	10	0	10	n	0.05	2	35	2	35	y	0.06	1	15	1	15	n	0.00	0	36	0	36	n	0.09	3	30	3	30	y	0.07	3	43	3	43	y	0.00	0	43	0	43	n	ENSMUSG00000063179.14	Pstk	chr7	protein_coding	phosphoseryl-tRNA kinase
known_NIR_16766	chr7	130986322;130986593	130986528;130989347	+	130986322	130989347	cassetteExon	ENSMUST00000075610.13	known	0.04	1.0	27	2;0	27	n	0.12	4.5	32	2;7	32	y	0.12	3.0	21	2;4	21	y	0.04	1.5	34	0;3	34	n	0.07	2.5	32	1;4	32	n	0.00	0.0	10	0;0	10	n	0.12	5.0	35	5;5	35	y	0.09	1.5	15	1;2	15	n	0.09	3.5	36	1;6	36	n	0.08	2.5	30	0;5	30	n	0.02	1.0	43	2;0	43	n	0.02	1.0	43	0;2	43	n	ENSMUSG00000063179.14	Pstk	chr7	protein_coding	phosphoseryl-tRNA kinase
known_NIR_16767	chr7	131163335;131164091	131164027;131165063	+	131163335	131165063	cassetteExon	ENSMUST00000084502.7	known	0.03	2.0	65	1;3	65	n	0.02	2.0	94	3;1	94	n	0.03	3.0	95	3;3	95	y	0.01	1.0	91	1;1	91	n	0.01	1.5	117	3;0	117	n	0.01	0.5	45	0;1	45	n	0.01	1.5	107	0;3	107	n	0.00	0.0	52	0;0	52	n	0.06	5.0	76	6;4	76	y	0.04	3.5	95	3;4	95	y	0.02	1.5	79	1;2	79	n	0.00	0.0	88	0;0	88	n	ENSMUSG00000066979.7	Bub3	chr7	protein_coding	BUB3 mitotic checkpoint protein
known_NIR_16768	chr7	132171869	132177240	-	132171869	132178024	A5SS	ENSMUST00000084500.8	known	0.00	1	388	1	388	n	0.00	0	345	0	345	n	0.00	0	150	0	150	n	0.00	1	897	1	897	n	0.00	2	405	2	405	y	0.01	1	188	1	188	n	0.00	0	529	0	529	n	0.00	0	148	0	148	n	0.00	2	579	2	579	y	0.00	4	897	4	897	y	0.00	1	424	1	424	n	0.00	4	997	4	997	y	ENSMUSG00000030934.10	Oat	chr7	protein_coding	ornithine aminotransferase
known_NIR_16769	chr7	132212559	132218939	+	132212559	132235730	A3SS	ENSMUST00000133969.8	known	0.00	0	1	0	1	n	0.50	2	2	2	2	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.43	6	8	6	8	y	-	-	-	-	-	-	0.00	0	6	0	6	n	ENSMUSG00000030946.14	Lhpp	chr7	protein_coding	phospholysine phosphohistidine inorganic pyrophosphate phosphatase
known_NIR_16770	chr7	132212559	132232211	+	132212559;132219055	132218939;132232211	ES	ENSMUST00000148669.2	known	1.00	85	0.0	85	0;0	n	0.99	98	1.0	98	2;0	n	0.99	55	0.5	55	0;1	n	0.99	91	0.5	91	0;1	n	0.99	92	0.5	92	1;0	n	1.00	57	0.0	57	0;0	n	0.99	136	1.5	136	0;3	n	1.00	38	0.0	38	0;0	n	1.00	75	0.0	75	0;0	n	0.97	123	4.0	123	6;2	y	1.00	75	0.0	75	0;0	n	0.98	123	2.0	123	0;4	n	ENSMUSG00000030946.14	Lhpp	chr7	protein_coding	phospholysine phosphohistidine inorganic pyrophosphate phosphatase
known_NIR_16771	chr7	132212559	132235730	+	132212559;132232398	132232211;132235730	ES	ENSMUST00000033241.6	known	0.01	1	85.5	1	85;86	n	0.02	2	93.5	2	98;89	y	0.02	1	57.0	1	55;59	n	0.04	5	109.5	5	91;128	y	0.00	0	109.5	0	92;127	n	0.02	1	58.0	1	57;59	n	0.01	2	156.5	2	136;177	y	0.02	1	41.0	1	38;44	n	0.04	3	81.0	3	75;87	y	0.05	8	140.0	8	123;157	y	0.00	0	86.5	0	75;98	n	0.04	6	140.5	6	123;158	y	ENSMUSG00000030946.14	Lhpp	chr7	protein_coding	phospholysine phosphohistidine inorganic pyrophosphate phosphatase
known_NIR_16772	chr7	132212559	132235730	+	132232398	132235730	5pMXE	ENSMUST00000130672.2	known	0.01	1	86	1	86	n	0.02	2	89	2	89	y	0.02	1	59	1	59	n	0.04	5	128	5	128	y	0.00	0	127	0	127	n	0.02	1	59	1	59	n	0.01	2	177	2	177	y	0.02	1	44	1	44	n	0.03	3	87	3	87	y	0.05	8	157	8	157	y	0.00	0	98	0	98	n	0.04	6	158	6	158	y	ENSMUSG00000030946.14	Lhpp	chr7	protein_coding	phospholysine phosphohistidine inorganic pyrophosphate phosphatase
known_NIR_16773	chr7	132222672	132232211	+	132212559	132232211	A5SS	ENSMUST00000033241.6	known	0.00	0	85	0	85	n	0.05	5	98	5	98	y	0.04	2	55	2	55	y	0.00	0	91	0	91	n	0.06	6	92	6	92	y	0.07	4	57	4	57	y	0.06	8	136	8	136	y	0.05	2	38	2	38	y	0.04	3	75	3	75	y	0.05	6	123	6	123	y	0.07	6	75	6	75	y	0.03	4	123	4	123	y	ENSMUSG00000030946.14	Lhpp	chr7	protein_coding	phospholysine phosphohistidine inorganic pyrophosphate phosphatase
known_NIR_16774	chr7	132222672	132232211	+	132219055	132232211	A5SS	ENSMUST00000148669.2	known	-	-	-	-	-	-	1.00	5	0	5	0	n	0.67	2	1	2	1	n	0.00	0	1	0	1	n	1.00	6	0	6	0	n	1.00	4	0	4	0	n	0.73	8	3	8	3	y	1.00	2	0	2	0	n	1.00	3	0	3	0	n	0.75	6	2	6	2	n	1.00	6	0	6	0	n	0.50	4	4	4	4	n	ENSMUSG00000030946.14	Lhpp	chr7	protein_coding	phospholysine phosphohistidine inorganic pyrophosphate phosphatase
known_NIR_16775	chr7	132222672;132223921	132223761;132232211	+	132222672	132232211	cassetteExon	ENSMUST00000209903.2	known	1.00	5.0	0	7;3	0	n	0.50	5.0	5	5;5	5	y	0.60	3.0	2	0;6	2	n	1.00	9.0	0	7;11	0	n	0.50	6.0	6	5;7	6	y	0.60	6.0	4	1;11	4	n	0.47	7.0	8	5;9	8	y	0.56	2.5	2	0;5	2	n	0.70	7.0	3	5;9	3	y	0.64	10.5	6	6;15	6	y	0.43	4.5	6	3;6	6	y	0.70	9.5	4	11;8	4	y	ENSMUSG00000030946.14	Lhpp	chr7	protein_coding	phospholysine phosphohistidine inorganic pyrophosphate phosphatase
known_NIR_16776	chr7	132223921	132232211	+	132212559	132232211	A5SS	ENSMUST00000033241.6	known	0.03	3	85	3	85	y	0.05	5	98	5	98	y	0.10	6	55	6	55	y	0.11	11	91	11	91	y	0.07	7	92	7	92	y	0.16	11	57	11	57	y	0.06	9	136	9	136	y	0.12	5	38	5	38	y	0.11	9	75	9	75	y	0.11	15	123	15	123	y	0.07	6	75	6	75	y	0.06	8	123	8	123	y	ENSMUSG00000030946.14	Lhpp	chr7	protein_coding	phospholysine phosphohistidine inorganic pyrophosphate phosphatase
known_NIR_16777	chr7	132223921	132232211	+	132219055	132232211	A5SS	ENSMUST00000148669.2	known	1.00	3	0	3	0	n	1.00	5	0	5	0	n	0.86	6	1	6	1	n	0.92	11	1	11	1	n	1.00	7	0	7	0	n	1.00	11	0	11	0	n	0.75	9	3	9	3	y	1.00	5	0	5	0	n	1.00	9	0	9	0	n	0.88	15	2	15	2	y	1.00	6	0	6	0	n	0.67	8	4	8	4	y	ENSMUSG00000030946.14	Lhpp	chr7	protein_coding	phospholysine phosphohistidine inorganic pyrophosphate phosphatase
known_NIR_16778	chr7	132244308	132307321	+	132244308;132252078	132251987;132307321	ES	ENSMUST00000033241.6	known	0.01	2	143.0	2	117;169	y	0.01	1	146.0	1	130;162	n	0.06	4	59.0	4	50;68	y	0.00	0	151.0	0	135;167	n	0.03	5	166.5	5	153;180	y	0.00	0	68.0	0	63;73	n	0.01	2	234.0	2	182;286	y	0.00	0	52.5	0	44;61	n	0.00	0	129.0	0	120;138	n	0.01	3	206.5	3	178;235	y	0.02	2	114.0	2	88;140	y	0.00	1	203.0	1	169;237	n	ENSMUSG00000030946.14	Lhpp	chr7	protein_coding	phospholysine phosphohistidine inorganic pyrophosphate phosphatase
known_NIR_16779	chr7	132252078	132272095	+	132252078	132307321	A3SS	ENSMUST00000033241.6	known	0.00	0	169	0	169	n	0.00	0	162	0	162	n	0.00	0	68	0	68	n	0.00	0	167	0	167	n	0.00	0	180	0	180	n	0.00	0	73	0	73	n	0.00	0	286	0	286	n	0.03	2	61	2	61	y	0.00	0	138	0	138	n	0.00	1	235	1	235	n	0.00	0	140	0	140	n	0.00	0	237	0	237	n	ENSMUSG00000030946.14	Lhpp	chr7	protein_coding	phospholysine phosphohistidine inorganic pyrophosphate phosphatase
known_NIR_16780	chr7	132317731	132361118	-	132317731	132373307	A5SS	ENSMUST00000097998.9	known	1.00	8	0	8	0	n	0.80	4	1	4	1	n	1.00	8	0	8	0	n	0.73	11	4	11	4	y	0.95	19	1	19	1	n	1.00	7	0	7	0	n	1.00	6	0	6	0	n	1.00	5	0	5	0	n	0.75	3	1	3	1	n	0.93	13	1	13	1	n	1.00	7	0	7	0	n	0.93	13	1	13	1	n	ENSMUSG00000030956.16	Fam53b	chr7	protein_coding	family with sequence similarity 53, member B
known_NIR_16781	chr7	132317731	132373307	-	132317731;132361896	132361118;132373307	ES	ENSMUST00000097999.9	known	0.00	0	8.5	0	8;9	n	0.17	1	5.0	1	4;6	n	0.00	0	7.0	0	8;6	n	0.26	4	11.5	4	11;12	y	0.06	1	14.5	1	19;10	n	0.00	0	8.5	0	7;10	n	0.00	0	9.5	0	6;13	n	0.00	0	8.0	0	5;11	n	0.18	1	4.5	1	3;6	n	0.08	1	11.0	1	13;9	n	0.00	0	9.5	0	7;12	n	0.06	1	14.5	1	13;16	n	ENSMUSG00000030956.16	Fam53b	chr7	protein_coding	family with sequence similarity 53, member B
known_NIR_16782	chr7	132361896	132373307	-	132317731	132373307	A3SS	ENSMUST00000097998.9	known	1.00	9	0	9	0	n	0.86	6	1	6	1	n	1.00	6	0	6	0	n	0.75	12	4	12	4	y	0.91	10	1	10	1	n	1.00	10	0	10	0	n	1.00	13	0	13	0	n	1.00	11	0	11	0	n	0.86	6	1	6	1	n	0.90	9	1	9	1	n	1.00	12	0	12	0	n	0.94	16	1	16	1	n	ENSMUSG00000030956.16	Fam53b	chr7	protein_coding	family with sequence similarity 53, member B
known_NIR_16783	chr7	132373358	132378485	-	132373358	132380865	A5SS	ENSMUST00000097999.9	known	0.57	4	3	4	3	n	0.33	2	4	2	4	n	0.25	1	3	1	3	n	0.38	6	10	6	10	y	0.00	0	9	0	9	n	0.29	2	5	2	5	n	0.38	6	10	6	10	y	0.20	2	8	2	8	y	0.25	1	3	1	3	n	0.64	7	4	7	4	y	0.12	1	7	1	7	n	0.50	13	13	13	13	y	ENSMUSG00000030956.16	Fam53b	chr7	protein_coding	family with sequence similarity 53, member B
known_NIR_16784	chr7	132429611	132433089	-	132429611	132452324	A5SS	ENSMUST00000120425.8	known	1.00	33	0	33	0	n	1.00	27	0	27	0	n	1.00	14	0	14	0	n	1.00	27	0	27	0	n	1.00	15	0	15	0	n	1.00	15	0	15	0	n	0.97	32	1	32	1	n	1.00	17	0	17	0	n	1.00	24	0	24	0	n	1.00	21	0	21	0	n	0.86	18	3	18	3	y	1.00	19	0	19	0	n	ENSMUSG00000030960.17	Eef1akmt2	chr7	protein_coding	EEF1A lysine methyltransferase 2
known_NIR_16785	chr7	132429611	132438829	-	132429611;132433305	132433089;132438829	ES	ENSMUST00000033257.15	known	0.15	4	23.5	4	33;14	y	0.17	5	24.5	5	27;22	y	0.15	3	17.0	3	14;20	y	0.18	5	23.0	5	27;19	y	0.08	2	22.5	2	15;30	y	0.30	5	11.5	5	15;8	y	0.16	5	26.0	5	32;20	y	0.00	0	17.5	0	17;18	n	0.04	1	23.5	1	24;23	n	0.18	6	27.5	6	21;34	y	0.06	1	16.5	1	18;15	n	0.05	1	19.0	1	19;19	n	ENSMUSG00000030960.17	Eef1akmt2	chr7	protein_coding	EEF1A lysine methyltransferase 2
known_NIR_16786	chr7	132429611	132438829	-	132433305	132438829	3pMXE	ENSMUST00000152410.8	known	0.22	4	14	4	14	y	0.19	5	22	5	22	y	0.13	3	20	3	20	y	0.21	5	19	5	19	y	0.06	2	30	2	30	y	0.38	5	8	5	8	y	0.20	5	20	5	20	y	0.00	0	18	0	18	n	0.04	1	23	1	23	n	0.15	6	34	6	34	y	0.06	1	15	1	15	n	0.05	1	19	1	19	n	ENSMUSG00000030960.17	Eef1akmt2	chr7	protein_coding	EEF1A lysine methyltransferase 2
known_NIR_16787	chr7	132438936	132452320	-	132438936	132452324	A5SS	ENSMUST00000033257.15	known	0.19	3	13	3	13	y	0.25	6	18	6	18	y	0.18	5	23	5	23	y	0.13	3	20	3	20	y	0.27	7	19	7	19	y	0.14	2	12	2	12	y	0.07	2	26	2	26	y	0.00	0	14	0	14	n	0.22	4	14	4	14	y	0.13	4	26	4	26	y	0.07	1	14	1	14	n	0.30	9	21	9	21	y	ENSMUSG00000030960.17	Eef1akmt2	chr7	protein_coding	EEF1A lysine methyltransferase 2
known_NIR_16788	chr7	132453220	132453941	-	132453220	132454228	A5SS	ENSMUST00000033257.15	known	0.06	1	17	1	17	n	0.07	1	13	1	13	n	0.05	1	20	1	20	n	0.00	0	16	0	16	n	0.00	0	31	0	31	n	0.00	0	6	0	6	n	0.00	0	20	0	20	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	23	0	23	n	0.08	1	12	1	12	n	0.10	2	19	2	19	y	ENSMUSG00000030960.17	Eef1akmt2	chr7	protein_coding	EEF1A lysine methyltransferase 2
known_NIR_16789	chr7	132466712	132470762	+	132466782	132470762	A5SS	ENSMUST00000084497.12	known	0.00	0	44	0	44	n	0.00	0	29	0	29	n	0.00	0	52	0	52	n	0.00	0	53	0	53	n	0.07	3	38	3	38	y	0.00	0	47	0	47	n	0.03	1	38	1	38	n	0.00	0	27	0	27	n	0.00	0	25	0	25	n	0.03	2	59	2	59	y	0.00	0	46	0	46	n	0.00	0	53	0	53	n	ENSMUSG00000030965.20	Abraxas2	chr7	protein_coding	BRISC complex subunit
known_NIR_16790	chr7	132476746	132478365	+	132476746	132478327	A3SS	ENSMUST00000084497.12	known	0.08	3	36	3	36	y	0.00	0	32	0	32	n	0.04	2	43	2	43	y	0.05	3	63	3	63	y	0.08	4	45	4	45	y	0.06	2	34	2	34	y	0.02	1	57	1	57	n	0.00	0	37	0	37	n	0.03	1	31	1	31	n	0.00	0	53	0	53	n	0.10	3	28	3	28	y	0.03	2	62	2	62	y	ENSMUSG00000030965.20	Abraxas2	chr7	protein_coding	BRISC complex subunit
known_NIR_16791	chr7	132549937	132551314	+	132533274	132551314	A5SS	ENSMUST00000106157.8	known	0.75	18	6	18	6	y	0.74	17	6	17	6	y	0.75	41	14	41	14	y	0.76	31	10	31	10	y	0.73	36	13	36	13	y	0.72	18	7	18	7	y	0.74	39	14	39	14	y	0.67	16	8	16	8	y	0.79	34	9	34	9	y	0.71	29	12	29	12	y	0.79	26	7	26	7	y	0.56	34	27	34	27	y	ENSMUSG00000030967.16	Zranb1	chr7	protein_coding	zinc finger, RAN-binding domain containing 1
known_NIR_16792	chr7	132568423	132572915	+	132568423	132583010	A3SS	ENSMUST00000210507.2	known	1.00	63	0	63	0	n	1.00	44	0	44	0	n	0.97	68	2	68	2	y	0.98	59	1	59	1	n	1.00	92	0	92	0	n	1.00	41	0	41	0	n	1.00	80	0	80	0	n	1.00	40	0	40	0	n	0.98	53	1	53	1	n	0.99	90	1	90	1	n	1.00	75	0	75	0	n	0.97	78	2	78	2	y	ENSMUSG00000030967.16	Zranb1	chr7	protein_coding	zinc finger, RAN-binding domain containing 1
known_NIR_16793	chr7	132575352	132583010	+	132568423	132583010	A5SS	ENSMUST00000210507.2	known	1.00	84	0	84	0	n	1.00	84	0	84	0	n	0.98	106	2	106	2	y	0.99	81	1	81	1	n	1.00	127	0	127	0	n	1.00	40	0	40	0	n	1.00	124	0	124	0	n	1.00	49	0	49	0	n	0.99	104	1	104	1	n	0.99	142	1	142	1	n	1.00	128	0	128	0	n	0.99	140	2	140	2	y	ENSMUSG00000030967.16	Zranb1	chr7	protein_coding	zinc finger, RAN-binding domain containing 1
known_NIR_16794	chr7	133245878	133249074	+	133245878;133248820	133248719;133249074	ES	ENSMUST00000051169.13	known	0.11	1	8.5	1	6;11	n	0.00	0	4.5	0	3;6	n	0.00	0	12.0	0	15;9	n	0.00	0	10.0	0	9;11	n	0.00	0	10.5	0	6;15	n	0.00	0	6.5	0	8;5	n	0.23	3	10.0	3	4;16	y	0.00	0	9.5	0	11;8	n	0.00	0	7.0	0	7;7	n	0.10	2	17.5	2	13;22	y	0.00	0	12.5	0	7;18	n	0.00	0	13.0	0	8;18	n	ENSMUSG00000039990.17	Edrf1	chr7	protein_coding	erythroid differentiation regulatory factor 1
known_NIR_16795	chr7	133260373	133261865	+	133260373	133261800	A3SS	ENSMUST00000051169.13	known	0.18	6	27	6	27	y	0.12	4	29	4	29	y	0.07	3	41	3	41	y	0.08	3	34	3	34	y	0.09	4	39	4	39	y	0.31	5	11	5	11	y	0.15	7	39	7	39	y	0.12	2	15	2	15	y	0.25	7	21	7	21	y	0.05	3	52	3	52	y	0.00	0	24	0	24	n	0.05	2	37	2	37	y	ENSMUSG00000039990.17	Edrf1	chr7	protein_coding	erythroid differentiation regulatory factor 1
known_NIR_16796	chr7	133269420	133273098	+	133269420	133273095	A3SS	ENSMUST00000051169.13	known	0.14	5	32	5	32	y	0.33	14	29	14	29	y	0.24	8	26	8	26	y	0.17	7	33	7	33	y	0.26	13	37	13	37	y	0.21	4	15	4	15	y	0.21	10	37	10	37	y	0.32	10	21	10	21	y	0.14	8	49	8	49	y	0.16	8	43	8	43	y	0.22	10	35	10	35	y	0.09	5	48	5	48	y	ENSMUSG00000039990.17	Edrf1	chr7	protein_coding	erythroid differentiation regulatory factor 1
known_NIR_16797	chr7	133294385	133299398	-	133292895	133299398	A3SS	ENSMUST00000135760.8	known	0.00	0	71	0	71	n	0.00	0	68	0	68	n	0.00	0	70	0	70	n	0.00	0	84	0	84	n	0.04	4	85	4	85	y	0.16	7	36	7	36	y	0.03	3	85	3	85	y	0.04	2	48	2	48	y	0.02	1	42	1	42	n	0.02	2	92	2	92	y	0.00	0	57	0	57	n	0.09	6	63	6	63	y	ENSMUSG00000030979.14	Uros	chr7	protein_coding	uroporphyrinogen III synthase
known_NIR_16798	chr7	133304198	133310653	-	133304198	133310738	A5SS	ENSMUST00000135760.8	known	0.62	20	12	20	12	y	0.52	15	14	15	14	y	0.50	8	8	8	8	y	0.54	20	17	20	17	y	0.33	14	28	14	28	y	0.67	12	6	12	6	y	0.53	17	15	17	15	y	0.50	13	13	13	13	y	0.47	8	9	8	9	y	0.60	29	19	29	19	y	0.40	12	18	12	18	y	0.56	24	19	24	19	y	ENSMUSG00000030979.14	Uros	chr7	protein_coding	uroporphyrinogen III synthase
known_NIR_16799	chr7	133304198	133311458	-	133304198	133310653	5pMXE	ENSMUST00000106145.10	known	0.23	6	20	6	20	y	0.25	5	15	5	15	y	0.70	19	8	19	8	y	0.13	3	20	3	20	y	0.44	11	14	11	14	y	0.33	6	12	6	12	y	0.29	7	17	7	17	y	0.35	7	13	7	13	y	0.53	9	8	9	8	y	0.12	4	29	4	29	y	0.45	10	12	10	12	y	0.29	10	24	10	24	y	ENSMUSG00000030979.14	Uros	chr7	protein_coding	uroporphyrinogen III synthase
known_NIR_16800	chr7	133304198	133311458	-	133304198	133310738	5pMXE	ENSMUST00000135760.8	known	0.33	6	12	6	12	y	0.26	5	14	5	14	y	0.70	19	8	19	8	y	0.15	3	17	3	17	y	0.28	11	28	11	28	y	0.50	6	6	6	6	y	0.32	7	15	7	15	y	0.35	7	13	7	13	y	0.50	9	9	9	9	y	0.17	4	19	4	19	y	0.36	10	18	10	18	y	0.34	10	19	10	19	y	ENSMUSG00000030979.14	Uros	chr7	protein_coding	uroporphyrinogen III synthase
known_NIR_16801	chr7	133316526	133316628	+	133315991	133316628	A5SS	ENSMUST00000033282.5	known	0.00	0	341	0	341	n	0.00	0	259	0	259	n	0.00	0	399	0	399	n	0.00	0	265	0	265	n	0.00	1	326	1	326	n	0.01	2	210	2	210	y	0.00	0	328	0	328	n	0.00	0	184	0	184	n	0.00	0	235	0	235	n	0.00	0	345	0	345	n	0.00	0	250	0	250	n	0.00	0	317	0	317	n	ENSMUSG00000030983.5	Bccip	chr7	protein_coding	BRCA2 and CDKN1A interacting protein
known_NIR_16802	chr7	133327124	133332460	-	133327124	133335697	A5SS	ENSMUST00000033290.12	known	0.00	0	45	0	45	n	0.00	0	38	0	38	n	0.00	0	100	0	100	n	0.00	0	72	0	72	n	0.00	0	98	0	98	n	0.00	0	28	0	28	n	0.00	0	52	0	52	n	0.00	0	42	0	42	n	0.02	1	52	1	52	n	0.03	2	69	2	69	y	0.05	2	40	2	40	y	0.00	0	73	0	73	n	ENSMUSG00000030986.14	Dhx32	chr7	protein_coding	DEAH (Asp-Glu-Ala-His) box polypeptide 32
known_NIR_16803	chr7	133350720	133361129	-	133350765	133361129	A3SS	ENSMUST00000033290.12	known	0.02	1	42	1	42	n	0.10	4	36	4	36	y	0.10	8	71	8	71	y	0.06	3	44	3	44	y	0.00	0	61	0	61	n	0.05	2	37	2	37	y	0.04	2	51	2	51	y	0.10	3	27	3	27	y	0.00	0	24	0	24	n	0.08	5	58	5	58	y	0.00	0	26	0	26	n	0.06	3	45	3	45	y	ENSMUSG00000030986.14	Dhx32	chr7	protein_coding	DEAH (Asp-Glu-Ala-His) box polypeptide 32
known_NIR_16804	chr7	133350765	133361129	-	133350765	133378331	A5SS	ENSMUST00000106139.8	known	0.98	42	1	42	1	n	1.00	36	0	36	0	n	0.97	71	2	71	2	y	1.00	44	0	44	0	n	1.00	61	0	61	0	n	0.95	37	2	37	2	y	1.00	51	0	51	0	n	1.00	27	0	27	0	n	1.00	24	0	24	0	n	1.00	58	0	58	0	n	1.00	26	0	26	0	n	1.00	45	0	45	0	n	ENSMUSG00000030986.14	Dhx32	chr7	protein_coding	DEAH (Asp-Glu-Ala-His) box polypeptide 32
known_NIR_16805	chr7	133350765	133378331	-	133350765;133361642	133361129;133378331	ES	ENSMUST00000033290.12	known	0.03	1	31.5	1	42;21	n	0.00	0	25.5	0	36;15	n	0.03	2	67.0	2	71;63	y	0.00	0	34.0	0	44;24	n	0.00	0	51.5	0	61;42	n	0.07	2	26.0	2	37;15	y	0.00	0	39.5	0	51;28	n	0.00	0	22.0	0	27;17	n	0.00	0	18.0	0	24;12	n	0.00	0	44.5	0	58;31	n	0.00	0	22.5	0	26;19	n	0.00	0	35.5	0	45;26	n	ENSMUSG00000030986.14	Dhx32	chr7	protein_coding	DEAH (Asp-Glu-Ala-His) box polypeptide 32
known_NIR_16806	chr7	133361642	133361750	-	133361642	133378331	A5SS	ENSMUST00000033290.12	known	0.00	0	21	0	21	n	0.00	0	15	0	15	n	0.00	0	63	0	63	n	0.00	0	24	0	24	n	0.00	0	42	0	42	n	0.12	2	15	2	15	y	0.03	1	28	1	28	n	0.00	0	17	0	17	n	0.00	0	12	0	12	n	0.03	1	31	1	31	n	0.00	0	19	0	19	n	0.00	0	26	0	26	n	ENSMUSG00000030986.14	Dhx32	chr7	protein_coding	DEAH (Asp-Glu-Ala-His) box polypeptide 32
known_NIR_16807	chr7	133361642	133377871	-	133361642	133378331	A5SS	ENSMUST00000033290.12	known	0.00	0	21	0	21	n	0.00	0	15	0	15	n	0.02	1	63	1	63	n	0.00	0	24	0	24	n	0.02	1	42	1	42	n	0.12	2	15	2	15	y	0.00	0	28	0	28	n	0.00	0	17	0	17	n	0.00	0	12	0	12	n	0.00	0	31	0	31	n	0.05	1	19	1	19	n	0.00	0	26	0	26	n	ENSMUSG00000030986.14	Dhx32	chr7	protein_coding	DEAH (Asp-Glu-Ala-His) box polypeptide 32
known_NIR_16808	chr7	133361642	133378331	-	133350765	133378331	A3SS	ENSMUST00000106139.8	known	0.95	21	1	21	1	n	1.00	15	0	15	0	n	0.97	63	2	63	2	y	1.00	24	0	24	0	n	1.00	42	0	42	0	n	0.88	15	2	15	2	y	1.00	28	0	28	0	n	1.00	17	0	17	0	n	1.00	12	0	12	0	n	1.00	31	0	31	0	n	1.00	19	0	19	0	n	1.00	26	0	26	0	n	ENSMUSG00000030986.14	Dhx32	chr7	protein_coding	DEAH (Asp-Glu-Ala-His) box polypeptide 32
known_NIR_16809	chr7	134384576	134384731	+	134384576	134390880	A3SS	ENSMUST00000211570.2	known	0.06	1	17	1	17	n	0.62	5	3	5	3	n	0.23	6	20	6	20	y	0.09	1	10	1	10	n	0.21	5	19	5	19	y	0.14	1	6	1	6	n	0.19	3	13	3	13	y	0.00	0	2	0	2	n	0.33	2	4	2	4	n	0.11	2	16	2	16	y	0.00	0	14	0	14	n	0.21	4	15	4	15	y	ENSMUSG00000058325.7	Dock1	chr7	protein_coding	dedicator of cytokinesis 1
known_NIR_16810	chr7	136978080	136978684	-	136978080	137012369	A5SS	ENSMUST00000145881.8	known	0.33	1	2	1	2	n	1.00	2	0	2	0	n	1.00	1	0	1	0	n	0.67	2	1	2	1	n	0.71	10	4	10	4	y	0.50	1	1	1	1	n	0.67	4	2	4	2	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.57	4	3	4	3	n	0.29	2	5	2	5	n	0.60	3	2	3	2	n	ENSMUSG00000040139.15	9430038I01Rik	chr7	protein_coding	RIKEN cDNA 9430038I01 gene
known_NIR_16811	chr7	136978080	137012369	-	136989430	137012369	3pMXE	ENSMUST00000135335.2	known	0.07	2	25	2	25	y	0.00	0	17	0	17	n	0.00	0	11	0	11	n	0.03	1	28	1	28	n	0.13	4	27	4	27	y	0.33	1	2	1	2	n	0.07	2	25	2	25	y	0.08	1	11	1	11	n	0.12	4	28	4	28	y	0.08	3	36	3	36	y	0.18	5	23	5	23	y	0.07	2	25	2	25	y	ENSMUSG00000040139.15	9430038I01Rik	chr7	protein_coding	RIKEN cDNA 9430038I01 gene
known_NIR_16812	chr7	136978080;136978846	136978684;136989100	-	136978080	136989100	cassetteExon	ENSMUST00000068996.13	known	0.06	2.0	29	1;3	29	n	0.11	2.5	20	2;3	20	y	0.20	1.5	6	1;2	6	n	0.06	1.5	22	2;1	22	n	0.19	6.5	27	10;3	27	y	0.20	0.5	2	1;0	2	n	0.15	3.5	20	4;3	20	y	0.12	1.0	7	0;2	7	n	0.02	0.5	22	1;0	22	n	0.27	9.0	24	4;14	24	y	0.10	3.0	27	2;4	27	y	0.19	4.5	19	3;6	19	y	ENSMUSG00000040139.15	9430038I01Rik	chr7	protein_coding	RIKEN cDNA 9430038I01 gene
known_NIR_16813	chr7	136978080;136989430	136989100;137012369	-	136978080	137012369	cassetteExon	ENSMUST00000145881.8	known	0.93	27.0	2	29;25	2	y	1.00	18.5	0	20;17	0	n	1.00	8.5	0	6;11	0	n	0.96	25.0	1	22;28	1	n	0.87	27.0	4	27;27	4	y	0.67	2.0	1	2;2	1	n	0.92	22.5	2	20;25	2	y	0.90	9.0	1	7;11	1	n	0.86	25.0	4	22;28	4	y	0.91	30.0	3	24;36	3	y	0.83	25.0	5	27;23	5	y	0.92	22.0	2	19;25	2	y	ENSMUSG00000040139.15	9430038I01Rik	chr7	protein_coding	RIKEN cDNA 9430038I01 gene
known_NIR_16814	chr7	137039500	137043115	+	137039500	137046708	A3SS	ENSMUST00000064404.8	known	0.00	0	170	0	170	n	0.01	2	132	2	132	y	0.00	0	164	0	164	n	0.00	0	203	0	203	n	0.00	0	227	0	227	n	0.00	0	89	0	89	n	0.00	0	195	0	195	n	0.00	0	106	0	106	n	0.00	0	135	0	135	n	0.00	0	253	0	253	n	0.00	0	191	0	191	n	0.00	0	249	0	249	n	ENSMUSG00000031068.9	Glrx3	chr7	protein_coding	glutaredoxin 3
known_NIR_16815	chr7	138438655	138447686	-	138438759	138447686	A3SS	ENSMUST00000075667.5	known	0.44	4	5	4	5	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.12	1	7	1	7	n	0.11	2	16	2	16	y	0.00	0	11	0	11	n	0.09	1	10	1	10	n	0.00	0	1	0	1	n	0.14	1	6	1	6	n	0.20	2	8	2	8	y	0.00	0	6	0	6	n	0.20	3	12	3	12	y	ENSMUSG00000041775.8	Mapk1ip1	chr7	protein_coding	mitogen-activated protein kinase 1 interacting protein 1
known_NIR_16816	chr7	138438759	138447686	-	138438759;138442663	138442306;138447686	ES	ENSMUST00000119664.2	known	1.00	5	0.0	5	0;0	n	1.00	2	0.0	2	0;0	n	0.89	8	1.0	8	2;0	n	0.93	7	0.5	7	0;1	n	0.84	16	3.0	16	2;4	y	1.00	11	0.0	11	0;0	n	1.00	10	0.0	10	0;0	n	1.00	1	0.0	1	0;0	n	1.00	6	0.0	6	0;0	n	0.89	8	1.0	8	2;0	n	0.86	6	1.0	6	0;2	n	0.89	12	1.5	12	3;0	n	ENSMUSG00000041775.8	Mapk1ip1	chr7	protein_coding	mitogen-activated protein kinase 1 interacting protein 1
known_NIR_16817	chr7	138448433;138450394	138450188;138470139	+	138448433	138470139	cassetteExon	ENSMUST00000128157.2	known	0.00	0.0	39	0;0	39	n	0.00	0.0	21	0;0	21	n	0.08	5.0	60	2;8	60	y	0.04	1.5	39	0;3	39	n	0.00	0.0	40	0;0	40	n	0.00	0.0	37	0;0	37	n	0.03	1.5	44	0;3	44	n	0.00	0.0	33	0;0	33	n	0.00	0.0	23	0;0	23	n	0.03	1.0	35	0;2	35	n	0.04	1.0	23	1;1	23	n	0.00	0.0	24	0;0	24	n	ENSMUSG00000041769.14	Ppp2r2d	chr7	protein_coding	protein phosphatase 2, regulatory subunit B, delta
known_NIR_16818	chr7	138448812	138470139	+	138448433	138470139	A5SS	ENSMUST00000128157.2	known	0.00	0	39	0	39	n	0.00	0	21	0	21	n	0.00	0	60	0	60	n	0.00	0	39	0	39	n	0.00	0	40	0	40	n	0.00	0	37	0	37	n	0.00	0	44	0	44	n	0.00	0	33	0	33	n	0.00	0	23	0	23	n	0.05	2	35	2	35	y	0.00	0	23	0	23	n	0.00	0	24	0	24	n	ENSMUSG00000041769.14	Ppp2r2d	chr7	protein_coding	protein phosphatase 2, regulatory subunit B, delta
known_NIR_16819	chr7	138462638	138470139	+	138448433	138470139	A5SS	ENSMUST00000128157.2	known	0.03	1	39	1	39	n	0.00	0	21	0	21	n	0.02	1	60	1	60	n	0.03	1	39	1	39	n	0.05	2	40	2	40	y	0.00	0	37	0	37	n	0.04	2	44	2	44	y	0.00	0	33	0	33	n	0.00	0	23	0	23	n	0.00	0	35	0	35	n	0.00	0	23	0	23	n	0.00	0	24	0	24	n	ENSMUSG00000041769.14	Ppp2r2d	chr7	protein_coding	protein phosphatase 2, regulatory subunit B, delta
known_NIR_16820	chr7	138470236	138472119	+	138470236	138471419	3pMXE	ENSMUST00000148453.8	known	0.05	2	36	2	36	y	0.00	0	24	0	24	n	0.02	2	93	2	93	y	0.07	3	40	3	40	y	0.08	4	45	4	45	y	0.08	3	34	3	34	y	0.06	4	58	4	58	y	0.05	2	37	2	37	y	0.00	0	29	0	29	n	0.02	1	42	1	42	n	0.00	0	30	0	30	n	0.05	2	40	2	40	y	ENSMUSG00000041769.14	Ppp2r2d	chr7	protein_coding	protein phosphatase 2, regulatory subunit B, delta
known_NIR_16821	chr7	138470236	138472119	+	138470236;138471584	138471419;138472119	ES	ENSMUST00000041097.13	known	0.06	2	32.0	2	36;28	y	0.00	0	23.5	0	24;23	n	0.02	2	87.5	2	93;82	y	0.07	3	43.0	3	40;46	y	0.08	4	45.0	4	45;45	y	0.08	3	36.0	3	34;38	y	0.06	4	64.0	4	58;70	y	0.06	2	33.5	2	37;30	y	0.00	0	24.5	0	29;20	n	0.02	1	57.0	1	42;72	n	0.00	0	33.5	0	30;37	n	0.05	2	38.5	2	40;37	y	ENSMUSG00000041769.14	Ppp2r2d	chr7	protein_coding	protein phosphatase 2, regulatory subunit B, delta
known_NIR_16822	chr7	138472231	138474730	+	138472231	138474603	A3SS	ENSMUST00000041097.13	known	0.03	1	35	1	35	n	0.04	1	25	1	25	n	0.05	5	90	5	90	y	0.05	3	56	3	56	y	0.04	2	46	2	46	y	0.00	0	54	0	54	n	0.06	4	60	4	60	y	0.08	3	34	3	34	y	0.00	0	27	0	27	n	0.03	2	69	2	69	y	0.08	3	36	3	36	y	0.00	0	45	0	45	n	ENSMUSG00000041769.14	Ppp2r2d	chr7	protein_coding	protein phosphatase 2, regulatory subunit B, delta
known_NIR_16823	chr7	138500557	138511035	-	138500557	138511092	A5SS	ENSMUST00000106112.2	known	0.00	0	411	0	411	n	0.01	4	376	4	376	y	0.01	3	435	3	435	y	0.00	0	587	0	587	n	0.00	1	633	1	633	n	0.00	0	123	0	123	n	0.00	3	648	3	648	y	0.00	0	229	0	229	n	0.00	0	318	0	318	n	0.00	0	639	0	639	n	0.00	0	486	0	486	n	0.00	0	638	0	638	n	ENSMUSG00000078566.9	Bnip3	chr7	protein_coding	BCL2/adenovirus E1B interacting protein 3
known_NIR_16824	chr7	139158134	139158270	+	139158185	139158270	A5SS	ENSMUST00000106098.8	known	0.07	2	25	2	25	y	0.00	0	15	0	15	n	0.00	0	29	0	29	n	0.18	3	14	3	14	y	0.05	2	40	2	40	y	0.00	0	18	0	18	n	0.07	3	42	3	42	y	0.04	1	22	1	22	n	0.00	0	15	0	15	n	0.05	2	40	2	40	y	0.00	0	25	0	25	n	0.00	0	28	0	28	n	ENSMUSG00000025477.15	Inpp5a	chr7	protein_coding	inositol polyphosphate-5-phosphatase A
known_NIR_16825	chr7	139588007	139610924	-	139609899	139610924	3pMXE	ENSMUST00000211261.2	known	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.07	1	14	1	14	n	0.15	2	11	2	11	y	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.17	2	10	2	10	y	0.00	0	9	0	9	n	0.00	0	19	0	19	n	ENSMUSG00000025474.10	Tubgcp2	chr7	protein_coding	tubulin, gamma complex associated protein 2
known_NIR_16826	chr7	139588007;139609899	139609740;139610924	-	139588007	139610924	cassetteExon	ENSMUST00000210224.2	known	1.00	10.0	0	11;9	0	n	1.00	9.0	0	10;8	0	n	1.00	22.5	0	30;15	0	n	1.00	12.5	0	18;7	0	n	0.94	15.0	1	16;14	1	n	0.79	7.5	2	4;11	2	y	1.00	12.0	0	11;13	0	n	1.00	10.5	0	13;8	0	n	1.00	8.0	0	10;6	0	n	0.89	15.5	2	21;10	2	y	1.00	11.5	0	14;9	0	n	1.00	16.0	0	13;19	0	n	ENSMUSG00000025474.10	Tubgcp2	chr7	protein_coding	tubulin, gamma complex associated protein 2
known_NIR_16827	chr7	139613711	139616260	-	139613711	139616009	5pMXE	ENSMUST00000210224.2	known	0.50	3	3	3	3	n	0.75	3	1	3	1	n	0.67	8	4	8	4	y	0.67	6	3	6	3	n	1.00	4	0	4	0	n	0.50	1	1	1	1	n	0.60	6	4	6	4	y	1.00	4	0	4	0	n	1.00	3	0	3	0	n	1.00	4	0	4	0	n	0.00	0	1	0	1	n	0.67	4	2	4	2	n	ENSMUSG00000025474.10	Tubgcp2	chr7	protein_coding	tubulin, gamma complex associated protein 2
known_NIR_16828	chr7	139616806	139617031	+	139616806	139617133	A3SS	ENSMUST00000168194.3	known	0.11	3	24	3	24	y	0.04	1	25	1	25	n	0.04	1	22	1	22	n	0.11	3	24	3	24	y	0.03	1	35	1	35	n	0.06	1	15	1	15	n	0.08	3	33	3	33	y	0.00	0	11	0	11	n	0.05	1	20	1	20	n	0.14	5	30	5	30	y	0.10	3	26	3	26	y	0.03	1	32	1	32	n	ENSMUSG00000025470.12	Zfp511	chr7	protein_coding	zinc finger protein 511
known_NIR_16829	chr7	139679619	139679792	-	139679535	139679792	A3SS	ENSMUST00000142105.8	known	0.87	139	20	139	20	y	0.90	174	19	174	19	y	0.91	127	12	127	12	y	0.91	106	10	106	10	y	0.90	133	14	133	14	y	0.91	63	6	63	6	y	0.92	179	15	179	15	y	0.93	70	5	70	5	y	0.92	128	11	128	11	y	0.88	184	26	184	26	y	0.90	177	20	177	20	y	0.95	207	12	207	12	y	ENSMUSG00000025466.20	Fuom	chr7	protein_coding	fucose mutarotase
known_NIR_16830	chr7	139679619	139679792	-	139679619	139679716	A5SS	ENSMUST00000148716.8	known	0.91	139	14	139	14	y	0.98	174	4	174	4	y	0.95	127	6	127	6	y	0.95	106	6	106	6	y	0.94	133	8	133	8	y	0.91	63	6	63	6	y	0.96	179	8	179	8	y	0.99	70	1	70	1	n	0.94	128	8	128	8	y	0.92	184	16	184	16	y	0.93	177	13	177	13	y	0.96	207	9	207	9	y	ENSMUSG00000025466.20	Fuom	chr7	protein_coding	fucose mutarotase
known_NIR_16831	chr7	139681582	139681708	-	139681582	139681994	A5SS	ENSMUST00000143197.8	known	0.67	4	2	4	2	n	0.50	4	4	4	4	n	0.36	4	7	4	7	y	0.29	2	5	2	5	n	0.89	8	1	8	1	n	0.50	2	2	2	2	n	0.00	0	2	0	2	n	1.00	4	0	4	0	n	0.43	3	4	3	4	n	0.00	0	5	0	5	n	0.62	5	3	5	3	n	0.38	3	5	3	5	n	ENSMUSG00000025466.20	Fuom	chr7	protein_coding	fucose mutarotase
known_NIR_16832	chr7	139681582	139681708	-	139681582	139682220	A5SS	ENSMUST00000120034.8	known	0.03	4	134	4	134	y	0.03	4	147	4	147	y	0.04	4	96	4	96	y	0.02	2	107	2	107	y	0.07	8	113	8	113	y	0.03	2	65	2	65	y	0.00	0	120	0	120	n	0.06	4	61	4	61	y	0.03	3	102	3	102	y	0.00	0	145	0	145	n	0.04	5	123	5	123	y	0.02	3	162	3	162	y	ENSMUSG00000025466.20	Fuom	chr7	protein_coding	fucose mutarotase
known_NIR_16833	chr7	139681582	139681994	-	139681582	139682220	A5SS	ENSMUST00000120034.8	known	0.01	2	134	2	134	y	0.03	4	147	4	147	y	0.07	7	96	7	96	y	0.04	5	107	5	107	y	0.01	1	113	1	113	n	0.03	2	65	2	65	y	0.02	2	120	2	120	y	0.00	0	61	0	61	n	0.04	4	102	4	102	y	0.03	5	145	5	145	y	0.02	3	123	3	123	y	0.03	5	162	5	162	y	ENSMUSG00000025466.20	Fuom	chr7	protein_coding	fucose mutarotase
known_NIR_16834	chr7	139692459	139696220	-	139692459;139693046	139692849;139696220	ES	ENSMUST00000026538.13	known	0.00	0	755.5	0	838;673	n	0.01	4	660.5	4	753;568	y	0.00	0	516.5	0	572;461	n	0.01	6	830.0	6	942;718	y	0.00	2	999.0	2	1114;884	y	0.01	3	431.0	3	486;376	y	0.00	1	1044.5	1	1200;889	n	0.00	0	449.0	0	542;356	n	0.00	1	729.0	1	839;619	n	0.00	4	1215.0	4	1372;1058	y	0.00	4	815.0	4	944;686	y	0.00	2	983.0	2	1118;848	y	ENSMUSG00000025465.14	Echs1	chr7	protein_coding	enoyl Coenzyme A hydratase, short chain, 1, mitochondrial
known_NIR_16835	chr7	139692459	139696220	-	139693046	139696220	A3SS	ENSMUST00000155647.2	known	0.00	0	673	0	673	n	0.01	4	568	4	568	y	0.00	0	461	0	461	n	0.01	6	718	6	718	y	0.00	2	884	2	884	y	0.01	3	376	3	376	y	0.00	1	889	1	889	n	0.00	0	356	0	356	n	0.00	1	619	1	619	n	0.00	4	1058	4	1058	y	0.01	4	686	4	686	y	0.00	2	848	2	848	y	ENSMUSG00000025465.14	Echs1	chr7	protein_coding	enoyl Coenzyme A hydratase, short chain, 1, mitochondrial
known_NIR_16836	chr7	139697269	139706239	+	139697269	139708931	A3SS	ENSMUST00000209908.2	known	0.26	9	25	9	25	y	0.29	9	22	9	22	y	0.33	4	8	4	8	y	0.36	15	27	15	27	y	0.25	12	36	12	36	y	0.40	4	6	4	6	y	0.39	22	34	22	34	y	0.29	5	12	5	12	y	0.51	31	30	31	30	y	0.47	27	31	27	31	y	0.36	19	34	19	34	y	0.54	37	32	37	32	y	ENSMUSG00000025464.16	Paox	chr7	protein_coding	polyamine oxidase (exo-N4-amino)
known_NIR_16837	chr7	139697269	139707421	+	139697269	139706239	3pMXE	ENSMUST00000210240.2	known	0.67	18	9	18	9	y	0.36	5	9	5	9	y	0.33	2	4	2	4	n	0.44	12	15	12	15	y	0.43	9	12	9	12	y	0.56	5	4	5	4	n	0.33	11	22	11	22	y	0.55	6	5	6	5	y	0.31	14	31	14	31	y	0.40	18	27	18	27	y	0.47	17	19	17	19	y	0.26	13	37	13	37	y	ENSMUSG00000025464.16	Paox	chr7	protein_coding	polyamine oxidase (exo-N4-amino)
known_NIR_16838	chr7	139697269	139708931	+	139697269;139707620	139707421;139708931	ES	ENSMUST00000211757.2	known	0.34	25	49.0	25	18;80	y	0.38	22	36.5	22	5;68	y	0.33	8	16.5	8	2;31	y	0.38	27	45.0	27	12;78	y	0.39	36	57.0	36	9;105	y	0.24	6	19.0	6	5;33	y	0.41	34	48.0	34	11;85	y	0.35	12	22.0	12	6;38	y	0.35	30	56.5	30	14;99	y	0.30	31	72.5	31	18;127	y	0.30	34	81.0	34	17;145	y	0.31	32	71.5	32	13;130	y	ENSMUSG00000025464.16	Paox	chr7	protein_coding	polyamine oxidase (exo-N4-amino)
known_NIR_16839	chr7	139697269;139706728	139706239;139707421	+	139697269	139707421	cassetteExon	ENSMUST00000211757.2	known	0.61	28.5	18	9;48	18	y	0.77	16.5	5	9;24	5	y	0.86	12.0	2	4;20	2	y	0.70	27.5	12	15;40	12	y	0.76	28.5	9	12;45	9	y	0.68	10.5	5	4;17	5	y	0.75	33.0	11	22;44	11	y	0.73	16.5	6	5;28	6	y	0.76	45.5	14	31;60	14	y	0.75	53.5	18	27;80	18	y	0.69	38.0	17	19;57	17	y	0.78	46.5	13	37;56	13	y	ENSMUSG00000025464.16	Paox	chr7	protein_coding	polyamine oxidase (exo-N4-amino)
known_NIR_16840	chr7	139705795	139706239	+	139697269	139706239	A5SS	ENSMUST00000210240.2	known	0.36	5	9	5	9	y	0.36	5	9	5	9	y	0.67	8	4	8	4	y	0.29	6	15	6	15	y	0.37	7	12	7	12	y	0.50	4	4	4	4	n	0.29	9	22	9	22	y	0.50	5	5	5	5	y	0.23	9	31	9	31	y	0.21	7	27	7	27	y	0.27	7	19	7	19	y	0.12	5	37	5	37	y	ENSMUSG00000025464.16	Paox	chr7	protein_coding	polyamine oxidase (exo-N4-amino)
known_NIR_16841	chr7	139717686	139718232	+	139717686	139723651	A3SS	ENSMUST00000211171.2	known	1.00	46	0	46	0	n	1.00	41	0	41	0	n	1.00	23	0	23	0	n	1.00	55	0	55	0	n	1.00	79	0	79	0	n	1.00	35	0	35	0	n	1.00	47	0	47	0	n	1.00	29	0	29	0	n	1.00	36	0	36	0	n	0.97	77	2	77	2	y	1.00	61	0	61	0	n	1.00	49	0	49	0	n	ENSMUSG00000039018.16	Mtg1	chr7	protein_coding	mitochondrial ribosome-associated GTPase 1
known_NIR_16842	chr7	139717966	139718232	+	139717686	139718232	A5SS	ENSMUST00000036977.9	known	0.08	4	46	4	46	y	0.09	4	41	4	41	y	0.04	1	23	1	23	n	0.00	0	55	0	55	n	0.00	0	79	0	79	n	0.00	0	35	0	35	n	0.08	4	47	4	47	y	0.00	0	29	0	29	n	0.05	2	36	2	36	y	0.01	1	77	1	77	n	0.03	2	61	2	61	y	0.00	0	49	0	49	n	ENSMUSG00000039018.16	Mtg1	chr7	protein_coding	mitochondrial ribosome-associated GTPase 1
known_NIR_16843	chr7	139720213	139723651	+	139717686	139723651	A5SS	ENSMUST00000211171.2	known	1.00	70	0	70	0	n	1.00	45	0	45	0	n	1.00	43	0	43	0	n	1.00	80	0	80	0	n	1.00	66	0	66	0	n	1.00	32	0	32	0	n	1.00	82	0	82	0	n	1.00	39	0	39	0	n	1.00	31	0	31	0	n	0.97	78	2	78	2	y	1.00	58	0	58	0	n	1.00	59	0	59	0	n	ENSMUSG00000039018.16	Mtg1	chr7	protein_coding	mitochondrial ribosome-associated GTPase 1
known_NIR_16844	chr7	139728960	139729661	+	139727247	139729661	A5SS	ENSMUST00000036977.9	known	0.00	0	53	0	53	n	0.04	2	47	2	47	y	0.00	0	47	0	47	n	0.00	0	51	0	51	n	0.00	0	59	0	59	n	0.00	0	26	0	26	n	0.02	2	83	2	83	y	0.00	0	27	0	27	n	0.00	0	44	0	44	n	0.00	0	65	0	65	n	0.00	0	65	0	65	n	0.00	0	43	0	43	n	ENSMUSG00000039018.16	Mtg1	chr7	protein_coding	mitochondrial ribosome-associated GTPase 1
known_NIR_16845	chr7	140349158	140349477	+	140349158	140352932	A3SS	ENSMUST00000210235.2	known	1.00	17010	16	17010	16	y	1.00	14901	17	14901	17	y	1.00	3040	8	3040	8	y	1.00	21897	27	21897	27	y	1.00	25092	34	25092	34	y	1.00	3286	4	3286	4	y	1.00	24356	33	24356	33	y	1.00	5263	10	5263	10	y	1.00	18677	18	18677	18	y	1.00	27280	27	27280	27	y	1.00	18634	14	18634	14	y	1.00	16496	21	16496	21	y	ENSMUSG00000025479.10	Cyp2e1	chr7	protein_coding	cytochrome P450, family 2, subfamily e, polypeptide 1
known_NIR_16846	chr7	140349637	140350855	+	140349637;140350141	140349965;140350855	ES	ENSMUST00000026552.9	known	0.00	24	21907.5	24	20078;23737	y	0.00	26	20396.5	26	17775;23018	y	0.00	5	3726.0	5	3505;3947	y	0.00	0	26703.0	0	25860;27546	n	0.00	0	29500.5	0	28034;30967	n	0.00	5	3704.0	5	3431;3977	y	0.00	32	31660.5	32	28840;34481	y	0.00	13	6348.0	13	6027;6669	y	0.00	30	23012.5	30	21432;24593	y	0.00	32	33388.0	32	31189;35587	y	0.00	0	23449.0	0	21222;25676	n	0.00	24	20026.5	24	18897;21156	y	ENSMUSG00000025479.10	Cyp2e1	chr7	protein_coding	cytochrome P450, family 2, subfamily e, polypeptide 1
known_NIR_16847	chr7	140350996	140352932	+	140349158	140352932	A5SS	ENSMUST00000210235.2	known	1.00	18008	16	18008	16	y	1.00	18057	17	18057	17	y	1.00	3073	8	3073	8	y	1.00	20660	27	20660	27	y	1.00	23210	34	23210	34	y	1.00	3019	4	3019	4	y	1.00	26935	33	26935	33	y	1.00	4766	10	4766	10	y	1.00	18383	18	18383	18	y	1.00	27547	27	27547	27	y	1.00	20373	14	20373	14	y	1.00	15827	21	15827	21	y	ENSMUSG00000025479.10	Cyp2e1	chr7	protein_coding	cytochrome P450, family 2, subfamily e, polypeptide 1
known_NIR_16848	chr7	140415315	140415525	+	140415171	140415525	A5SS	ENSMUST00000106050.8	known	0.17	92	465	92	465	y	0.18	112	513	112	513	y	0.24	117	380	117	380	y	0.17	98	479	98	479	y	0.15	99	550	99	550	y	0.23	70	228	70	228	y	0.22	140	510	140	510	y	0.23	67	226	67	226	y	0.20	103	415	103	415	y	0.15	124	702	124	702	y	0.21	129	492	129	492	y	0.16	105	566	105	566	y	ENSMUSG00000025481.13	Urah	chr7	protein_coding	urate (5-hydroxyiso-) hydrolase
known_NIR_16849	chr7	140415368	140415525	+	140415171	140415525	A5SS	ENSMUST00000106050.8	known	0.00	0	465	0	465	n	0.00	0	513	0	513	n	0.06	23	380	23	380	y	0.08	39	479	39	479	y	0.00	0	550	0	550	n	0.07	17	228	17	228	y	0.07	41	510	41	510	y	0.00	0	226	0	226	n	0.06	27	415	27	415	y	0.00	0	702	0	702	n	0.09	47	492	47	492	y	0.00	0	566	0	566	n	ENSMUSG00000025481.13	Urah	chr7	protein_coding	urate (5-hydroxyiso-) hydrolase
known_NIR_16850	chr7	140415368	140415525	+	140415315	140415525	A5SS	ENSMUST00000211372.2	known	0.00	0	92	0	92	n	0.00	0	112	0	112	n	0.16	23	117	23	117	y	0.28	39	98	39	98	y	0.00	0	99	0	99	n	0.20	17	70	17	70	y	0.23	41	140	41	140	y	0.00	0	67	0	67	n	0.21	27	103	27	103	y	0.00	0	124	0	124	n	0.27	47	129	47	129	y	0.00	0	105	0	105	n	ENSMUSG00000025481.13	Urah	chr7	protein_coding	urate (5-hydroxyiso-) hydrolase
known_NIR_16851	chr7	140416795	140417496	+	140416795	140417599	A3SS	ENSMUST00000106050.8	known	0.03	44	1434	44	1434	y	0.02	34	1575	34	1575	y	0.04	44	1099	44	1099	y	0.02	32	1397	32	1397	y	0.05	80	1633	80	1633	y	0.03	25	727	25	727	y	0.03	48	1758	48	1758	y	0.05	31	634	31	634	y	0.03	39	1354	39	1354	y	0.03	52	1904	52	1904	y	0.02	41	1810	41	1810	y	0.04	69	1763	69	1763	y	ENSMUSG00000025481.13	Urah	chr7	protein_coding	urate (5-hydroxyiso-) hydrolase
known_NIR_16852	chr7	140416795	140417620	+	140416795	140417496	A3SS	ENSMUST00000209978.2	known	0.40	29	44	29	44	y	0.45	28	34	28	34	y	0.00	0	44	0	44	n	0.46	27	32	27	32	y	0.33	39	80	39	80	y	0.00	0	25	0	25	n	0.00	0	48	0	48	n	0.35	17	31	17	31	y	0.00	0	39	0	39	n	0.51	55	52	55	52	y	0.51	43	41	43	41	y	0.00	0	69	0	69	n	ENSMUSG00000025481.13	Urah	chr7	protein_coding	urate (5-hydroxyiso-) hydrolase
known_NIR_16853	chr7	140416795	140417620	+	140416795	140417599	A3SS	ENSMUST00000106050.8	known	0.02	29	1434	29	1434	y	0.02	28	1575	28	1575	y	0.00	0	1099	0	1099	n	0.02	27	1397	27	1397	y	0.02	39	1633	39	1633	y	0.00	0	727	0	727	n	0.00	0	1758	0	1758	n	0.03	17	634	17	634	y	0.00	0	1354	0	1354	n	0.03	55	1904	55	1904	y	0.02	43	1810	43	1810	y	0.00	0	1763	0	1763	n	ENSMUSG00000025481.13	Urah	chr7	protein_coding	urate (5-hydroxyiso-) hydrolase
known_NIR_16854	chr7	140434850	140434987	-	140434734	140434987	A3SS	ENSMUST00000209690.2	known	0.01	1	72	1	72	n	0.03	3	95	3	95	y	0.01	2	145	2	145	y	0.03	3	83	3	83	y	0.04	6	132	6	132	y	0.00	0	83	0	83	n	0.03	3	102	3	102	y	0.00	0	87	0	87	n	0.00	0	64	0	64	n	0.04	4	101	4	101	y	0.01	1	84	1	84	n	0.03	2	74	2	74	y	ENSMUSG00000110136.2	Gm45785	chr7	protein_coding	predicted gene 45785
known_NIR_16855	chr7	140435078;140435843	140435719;140436134	-	140435078	140436134	cassetteExon	ENSMUST00000209690.2	known	0.11	7.5	61	8;7	61	y	0.10	7.0	64	11;3	64	y	0.13	17.0	118	22;12	118	y	0.09	5.5	57	4;7	57	y	0.16	13.0	66	16;10	66	y	0.17	14.0	68	17;11	68	y	0.09	9.5	94	15;4	94	y	0.11	7.5	63	9;6	63	y	0.13	6.5	44	7;6	44	y	0.13	11.0	71	10;12	71	y	0.11	7.5	60	11;4	60	y	0.13	9.0	58	10;8	58	y	ENSMUSG00000110136.2	Gm45785	chr7	protein_coding	predicted gene 45785
known_NIR_16856	chr7	140437467	140437687	+	140437467	140437758	A3SS	ENSMUST00000026558.7	known	0.00	0	40	0	40	n	0.00	0	37	0	37	n	0.00	0	96	0	96	n	0.00	0	60	0	60	n	0.00	0	55	0	55	n	0.06	2	33	2	33	y	0.00	0	70	0	70	n	0.03	1	39	1	39	n	0.00	0	29	0	29	n	0.02	1	63	1	63	n	0.00	0	41	0	41	n	0.00	0	63	0	63	n	ENSMUSG00000025485.14	Ric8a	chr7	protein_coding	RIC8 guanine nucleotide exchange factor A
known_NIR_16857	chr7	140437541	140437758	+	140437467	140437758	A5SS	ENSMUST00000026558.7	known	0.00	0	40	0	40	n	0.00	0	37	0	37	n	0.01	1	96	1	96	n	0.00	0	60	0	60	n	0.02	1	55	1	55	n	0.08	3	33	3	33	y	0.00	0	70	0	70	n	0.00	0	39	0	39	n	0.00	0	29	0	29	n	0.00	0	63	0	63	n	0.00	0	41	0	41	n	0.00	0	63	0	63	n	ENSMUSG00000025485.14	Ric8a	chr7	protein_coding	RIC8 guanine nucleotide exchange factor A
known_NIR_16858	chr7	140445097	140445579	-	140445097	140456267	A5SS	ENSMUST00000137024.8	known	0.25	2	6	2	6	n	0.00	0	1	0	1	n	0.33	2	4	2	4	n	0.00	0	4	0	4	n	0.62	8	5	8	5	y	0.60	3	2	3	2	n	0.23	3	10	3	10	y	0.33	2	4	2	4	n	0.38	3	5	3	5	n	0.31	5	11	5	11	y	0.20	2	8	2	8	y	0.33	3	6	3	6	n	ENSMUSG00000025486.18	Sirt3	chr7	protein_coding	sirtuin 3
known_NIR_16859	chr7	140445097	140449402	-	140445097;140445739	140445579;140449402	ES	ENSMUST00000210296.2	known	0.99	194	2.5	194	2;3	y	0.99	189	2.5	189	0;5	n	0.99	105	1.0	105	2;0	n	0.99	185	2.0	185	0;4	n	0.98	265	5.5	265	8;3	y	0.98	84	2.0	84	3;1	n	0.99	260	3.0	260	3;3	y	0.99	95	1.0	95	2;0	n	0.98	171	3.0	171	3;3	y	0.99	362	3.0	362	5;1	n	0.99	242	2.0	242	2;2	y	0.99	239	2.5	239	3;2	y	ENSMUSG00000025486.18	Sirt3	chr7	protein_coding	sirtuin 3
known_NIR_16860	chr7	140445097	140456267	-	140445097;140449563	140449402;140456267	ES	ENSMUST00000106048.10	known	0.03	6	187.0	6	194;180	y	0.01	1	183.5	1	189;178	n	0.04	4	98.0	4	105;91	y	0.02	4	170.0	4	185;155	y	0.02	5	253.5	5	265;242	y	0.03	2	76.5	2	84;69	y	0.04	10	256.0	10	260;252	y	0.04	4	86.5	4	95;78	y	0.03	5	170.5	5	171;170	y	0.03	11	349.5	11	362;337	y	0.03	8	235.0	8	242;228	y	0.02	6	237.0	6	239;235	y	ENSMUSG00000025486.18	Sirt3	chr7	protein_coding	sirtuin 3
known_NIR_16861	chr7	140445097	140456267	-	140449563	140456267	3pMXE	ENSMUST00000147331.9	known	0.03	6	180	6	180	y	0.01	1	178	1	178	n	0.04	4	91	4	91	y	0.03	4	155	4	155	y	0.02	5	242	5	242	y	0.03	2	69	2	69	y	0.04	10	252	10	252	y	0.05	4	78	4	78	y	0.03	5	170	5	170	y	0.03	11	337	11	337	y	0.03	8	228	8	228	y	0.02	6	235	6	235	y	ENSMUSG00000025486.18	Sirt3	chr7	protein_coding	sirtuin 3
known_NIR_16862	chr7	140457964	140461676	-	140458050	140461676	A3SS	ENSMUST00000147331.9	known	0.07	2	27	2	27	y	0.00	0	26	0	26	n	0.11	2	17	2	17	y	0.12	4	30	4	30	y	0.13	5	33	5	33	y	0.00	0	21	0	21	n	0.09	4	43	4	43	y	0.27	6	16	6	16	y	0.13	4	27	4	27	y	0.01	1	79	1	79	n	0.00	0	31	0	31	n	0.07	3	43	3	43	y	ENSMUSG00000025486.18	Sirt3	chr7	protein_coding	sirtuin 3
known_NIR_16863	chr7	140457964	140461676	-	140458058	140461676	A3SS	ENSMUST00000106048.10	known	0.02	2	90	2	90	y	0.00	0	69	0	69	n	0.03	2	60	2	60	y	0.04	4	105	4	105	y	0.04	5	119	5	119	y	0.00	0	50	0	50	n	0.02	4	158	4	158	y	0.09	6	60	6	60	y	0.03	4	122	4	122	y	0.01	1	159	1	159	n	0.00	0	113	0	113	n	0.02	3	122	3	122	y	ENSMUSG00000025486.18	Sirt3	chr7	protein_coding	sirtuin 3
known_NIR_16864	chr7	140458050	140461676	-	140458050	140462071	A5SS	ENSMUST00000210296.2	known	1.00	27	0	27	0	n	1.00	26	0	26	0	n	1.00	17	0	17	0	n	1.00	30	0	30	0	n	1.00	33	0	33	0	n	1.00	21	0	21	0	n	0.96	43	2	43	2	y	1.00	16	0	16	0	n	1.00	27	0	27	0	n	1.00	79	0	79	0	n	1.00	31	0	31	0	n	1.00	43	0	43	0	n	ENSMUSG00000025486.18	Sirt3	chr7	protein_coding	sirtuin 3
known_NIR_16865	chr7	140458050	140461676	-	140458058	140461676	A3SS	ENSMUST00000106048.10	known	0.23	27	90	27	90	y	0.27	26	69	26	69	y	0.22	17	60	17	60	y	0.22	30	105	30	105	y	0.22	33	119	33	119	y	0.30	21	50	21	50	y	0.21	43	158	43	158	y	0.21	16	60	16	60	y	0.18	27	122	27	122	y	0.33	79	159	79	159	y	0.22	31	113	31	113	y	0.26	43	122	43	122	y	ENSMUSG00000025486.18	Sirt3	chr7	protein_coding	sirtuin 3
known_NIR_16866	chr7	140458058	140462071	-	140458050	140462071	A3SS	ENSMUST00000210296.2	known	1.00	3	0	3	0	n	1.00	4	0	4	0	n	1.00	5	0	5	0	n	1.00	9	0	9	0	n	1.00	4	0	4	0	n	1.00	1	0	1	0	n	0.83	10	2	10	2	y	-	-	-	-	-	-	1.00	5	0	5	0	n	1.00	8	0	8	0	n	1.00	5	0	5	0	n	1.00	5	0	5	0	n	ENSMUSG00000025486.18	Sirt3	chr7	protein_coding	sirtuin 3
known_NIR_16867	chr7	140458058	140462071	-	140458058	140461676	5pMXE	ENSMUST00000106048.10	known	0.03	3	90	3	90	y	0.05	4	69	4	69	y	0.08	5	60	5	60	y	0.08	9	105	9	105	y	0.03	4	119	4	119	y	0.02	1	50	1	50	n	0.06	10	158	10	158	y	0.00	0	60	0	60	n	0.04	5	122	5	122	y	0.05	8	159	8	159	y	0.04	5	113	5	113	y	0.04	5	122	5	122	y	ENSMUSG00000025486.18	Sirt3	chr7	protein_coding	sirtuin 3
known_NIR_16868	chr7	140486049	140486279	+	140485978	140486279	A5SS	ENSMUST00000210080.2	known	0.52	14	13	14	13	y	0.53	16	14	16	14	y	0.73	16	6	16	6	y	0.59	20	14	20	14	y	0.48	27	29	27	29	y	0.60	9	6	9	6	y	0.52	27	25	27	25	y	0.53	16	14	16	14	y	0.56	33	26	33	26	y	0.55	48	40	48	40	y	0.65	31	17	31	17	y	0.56	30	24	30	24	y	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
known_NIR_16869	chr7	140486049	140486431	+	140486049	140486279	A3SS	ENSMUST00000209817.2	known	0.92	163	14	163	14	y	0.88	118	16	118	16	y	0.70	38	16	38	16	y	0.90	177	20	177	20	y	0.90	254	27	254	27	y	0.88	68	9	68	9	y	0.89	211	27	211	27	y	0.84	82	16	82	16	y	0.82	152	33	152	33	y	0.80	194	48	194	48	y	0.85	172	31	172	31	y	0.87	204	30	204	30	y	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
known_NIR_16870	chr7	140486049	140486431	+	140486119	140486431	A5SS	ENSMUST00000209842.2	known	0.75	163	54	163	54	y	0.66	118	61	118	61	y	0.63	38	22	38	22	y	0.75	177	59	177	59	y	0.73	254	96	254	96	y	0.68	68	32	68	32	y	0.70	211	92	211	92	y	0.65	82	44	82	44	y	0.67	152	75	152	75	y	0.66	194	99	194	99	y	0.71	172	69	172	69	y	0.69	204	90	204	90	y	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
known_NIR_16871	chr7	140486574	140486740	+	140486574	140487172	A3SS	ENSMUST00000209817.2	known	0.03	3	104	3	104	y	0.10	10	94	10	94	y	0.00	0	45	0	45	n	0.00	0	107	0	107	n	0.04	5	115	5	115	y	0.07	4	52	4	52	y	0.10	11	102	11	102	y	0.07	4	56	4	56	y	0.06	7	113	7	113	y	0.08	13	152	13	152	y	0.08	10	112	10	112	y	0.05	5	98	5	98	y	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
known_NIR_16872	chr7	140486574	140486740	+	140486574	140487175	A3SS	ENSMUST00000210080.2	known	0.04	3	72	3	72	y	0.14	10	62	10	62	y	0.00	0	25	0	25	n	0.00	0	64	0	64	n	0.05	5	100	5	100	y	0.10	4	36	4	36	y	0.11	11	88	11	88	y	0.09	4	42	4	42	y	0.09	7	74	7	74	y	0.13	13	88	13	88	y	0.08	10	108	10	108	y	0.04	5	107	5	107	y	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
known_NIR_16873	chr7	140486574	140487172	+	140486574	140487175	A3SS	ENSMUST00000210080.2	known	0.59	104	72	104	72	y	0.60	94	62	94	62	y	0.64	45	25	45	25	y	0.63	107	64	107	64	y	0.53	115	100	115	100	y	0.59	52	36	52	36	y	0.54	102	88	102	88	y	0.57	56	42	56	42	y	0.60	113	74	113	74	y	0.63	152	88	152	88	y	0.51	112	108	112	108	y	0.48	98	107	98	107	y	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
known_NIR_16874	chr7	140487618	140487704	+	140487618	140487753	A3SS	ENSMUST00000210080.2	known	0.38	371	618	371	618	y	0.32	282	601	282	601	y	0.43	97	129	97	129	y	0.32	250	531	250	531	y	0.36	505	909	505	909	y	0.41	108	157	108	157	y	0.34	442	869	442	869	y	0.39	211	331	211	331	y	0.33	316	636	316	636	y	0.34	473	901	473	901	y	0.31	391	853	391	853	y	0.33	388	798	388	798	y	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
known_NIR_16875	chr7	140521556	140522899	+	140522478	140522899	5pMXE	ENSMUST00000163094.9	known	0.05	2	35	2	35	y	0.00	0	37	0	37	n	0.00	0	38	0	38	n	0.00	0	40	0	40	n	0.00	0	72	0	72	n	0.00	0	21	0	21	n	0.00	0	63	0	63	n	0.00	0	33	0	33	n	0.07	2	28	2	28	y	0.00	0	50	0	50	n	0.00	0	41	0	41	n	0.00	0	65	0	65	n	ENSMUSG00000062031.14	Pgghg	chr7	protein_coding	protein glucosylgalactosylhydroxylysine glucosidase
known_NIR_16876	chr7	140521556;140522478	140522198;140522899	+	140521556	140522899	cassetteExon	ENSMUST00000164337.8	known	0.93	25.0	2	15;35	2	y	1.00	25.0	0	13;37	0	n	1.00	28.0	0	18;38	0	n	1.00	30.0	0	20;40	0	n	1.00	48.0	0	24;72	0	n	1.00	14.0	0	7;21	0	n	1.00	45.0	0	27;63	0	n	1.00	21.0	0	9;33	0	n	0.91	21.0	2	14;28	2	y	1.00	38.5	0	27;50	0	n	1.00	31.0	0	21;41	0	n	1.00	48.0	0	31;65	0	n	ENSMUSG00000062031.14	Pgghg	chr7	protein_coding	protein glucosylgalactosylhydroxylysine glucosidase
known_NIR_16877	chr7	140525675;140525926	140525793;140526020	+	140525675	140526020	cassetteExon	ENSMUST00000164337.8	known	0.94	63.0	4	73;53	4	y	0.98	61.5	1	72;51	1	n	0.98	56.0	1	67;45	1	n	1.00	66.0	0	80;52	0	n	1.00	101.5	0	105;98	0	n	0.97	34.0	1	34;34	1	n	0.98	89.0	2	91;87	2	y	0.93	41.5	3	45;38	3	y	1.00	79.0	0	83;75	0	n	1.00	100.0	0	113;87	0	n	1.00	74.5	0	79;70	0	n	0.99	79.5	1	90;69	1	n	ENSMUSG00000062031.14	Pgghg	chr7	protein_coding	protein glucosylgalactosylhydroxylysine glucosidase
known_NIR_16878	chr7	140526626	140526707	+	140526626	140526702	A3SS	ENSMUST00000164337.8	known	0.11	11	85	11	85	y	0.08	7	77	7	77	y	0.00	0	49	0	49	n	0.12	9	63	9	63	y	0.13	18	118	18	118	y	0.16	6	31	6	31	y	0.08	11	124	11	124	y	0.11	4	32	4	32	y	0.13	10	65	10	65	y	0.06	7	101	7	101	y	0.01	1	91	1	91	n	0.05	4	74	4	74	y	ENSMUSG00000062031.14	Pgghg	chr7	protein_coding	protein glucosylgalactosylhydroxylysine glucosidase
known_NIR_16879	chr7	140674858	140676473	-	140674858	140680392	A5SS	ENSMUST00000210167.2	known	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.11	1	8	1	8	n	0.25	2	6	2	6	n	0.00	0	4	0	4	n	0.18	2	9	2	9	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.25	2	6	2	6	n	0.00	0	7	0	7	n	ENSMUSG00000025494.9	Sigirr	chr7	protein_coding	single immunoglobulin and toll-interleukin 1 receptor (TIR) domain
known_NIR_16880	chr7	140715323	140726994	+	140715323	140723006	3pMXE	ENSMUST00000174058.8	known	0.04	1	23	1	23	n	0.00	0	23	0	23	n	0.00	0	33	0	33	n	0.09	3	31	3	31	y	0.04	1	25	1	25	n	0.05	1	19	1	19	n	0.00	0	40	0	40	n	0.00	0	15	0	15	n	0.04	1	25	1	25	n	0.00	0	41	0	41	n	0.03	1	28	1	28	n	0.05	1	20	1	20	n	ENSMUSG00000025495.16	Ptdss2	chr7	protein_coding	phosphatidylserine synthase 2
known_NIR_16881	chr7	140715323	140726994	+	140715323;140723088	140723006;140726994	ES	ENSMUST00000174373.8	known	0.04	1	25.5	1	23;28	n	0.00	0	21.0	0	23;19	n	0.00	0	29.0	0	33;25	n	0.09	3	29.5	3	31;28	y	0.04	1	24.0	1	25;23	n	0.04	1	22.5	1	19;26	n	0.00	0	36.0	0	40;32	n	0.00	0	20.0	0	15;25	n	0.04	1	22.5	1	25;20	n	0.00	0	39.0	0	41;37	n	0.04	1	24.5	1	28;21	n	0.04	1	26.0	1	20;32	n	ENSMUSG00000025495.16	Ptdss2	chr7	protein_coding	phosphatidylserine synthase 2
known_NIR_16882	chr7	140723088	140723260	+	140723088	140726994	A3SS	ENSMUST00000174373.8	known	0.00	0	28	0	28	n	0.00	0	19	0	19	n	0.04	1	25	1	25	n	0.03	1	28	1	28	n	0.04	1	23	1	23	n	0.00	0	26	0	26	n	0.06	2	32	2	32	y	0.00	0	25	0	25	n	0.00	0	20	0	20	n	0.00	0	37	0	37	n	0.05	1	21	1	21	n	0.14	5	32	5	32	y	ENSMUSG00000025495.16	Ptdss2	chr7	protein_coding	phosphatidylserine synthase 2
known_NIR_16883	chr7	140734615	140734851	+	140734615	140734724	A3SS	ENSMUST00000026568.10	known	0.18	6	27	6	27	y	0.03	1	31	1	31	n	0.16	3	16	3	16	y	0.08	2	23	2	23	y	0.05	2	41	2	41	y	0.00	0	13	0	13	n	0.00	0	35	0	35	n	0.00	0	15	0	15	n	0.05	1	18	1	18	n	0.05	2	40	2	40	y	0.00	0	23	0	23	n	0.08	2	23	2	23	y	ENSMUSG00000025495.16	Ptdss2	chr7	protein_coding	phosphatidylserine synthase 2
known_NIR_16884	chr7	140746700	140748589	-	140746700	140748487	A5SS	ENSMUST00000210314.2	known	0.83	98	20	98	20	y	0.87	81	12	81	12	y	0.83	100	21	100	21	y	0.76	57	18	57	18	y	0.79	118	32	118	32	y	0.77	54	16	54	16	y	0.80	94	24	94	24	y	0.83	63	13	63	13	y	0.87	78	12	78	12	y	0.78	132	37	132	37	y	0.77	74	22	74	22	y	0.93	119	9	119	9	y	ENSMUSG00000038650.16	Rnh1	chr7	protein_coding	ribonuclease/angiogenin inhibitor 1
known_NIR_16885	chr7	140746700	140752655	-	140746700	140748487	5pMXE	ENSMUST00000210314.2	known	0.89	163	20	163	20	y	0.91	125	12	125	12	y	0.89	178	21	178	21	y	0.93	238	18	238	18	y	0.87	210	32	210	32	y	0.89	135	16	135	16	y	0.88	180	24	180	24	y	0.90	117	13	117	13	y	0.93	160	12	160	12	y	0.85	216	37	216	37	y	0.88	157	22	157	22	y	0.96	225	9	225	9	y	ENSMUSG00000038650.16	Rnh1	chr7	protein_coding	ribonuclease/angiogenin inhibitor 1
known_NIR_16886	chr7	140746700	140752655	-	140746700	140748589	5pMXE	ENSMUST00000106033.5	known	0.62	163	98	163	98	y	0.61	125	81	125	81	y	0.64	178	100	178	100	y	0.81	238	57	238	57	y	0.64	210	118	210	118	y	0.71	135	54	135	54	y	0.66	180	94	180	94	y	0.65	117	63	117	63	y	0.67	160	78	160	78	y	0.62	216	132	216	132	y	0.68	157	74	157	74	y	0.65	225	119	225	119	y	ENSMUSG00000038650.16	Rnh1	chr7	protein_coding	ribonuclease/angiogenin inhibitor 1
known_NIR_16887	chr7	140771140	140771255	-	140771107	140771255	A3SS	ENSMUST00000026572.11	known	0.06	13	188	13	188	y	0.11	24	190	24	190	y	0.13	32	210	32	210	y	0.12	21	147	21	147	y	0.12	29	206	29	206	y	0.12	18	130	18	130	y	0.11	30	234	30	234	y	0.13	13	87	13	87	y	0.06	10	164	10	164	y	0.10	21	193	21	193	y	0.10	21	197	21	197	y	0.12	27	202	27	202	y	ENSMUSG00000025499.19	Hras	chr7	protein_coding	Harvey rat sarcoma virus oncogene
known_NIR_16888	chr7	140771380	140772044	-	140771380	140771868	5pMXE	ENSMUST00000134008.2	known	0.96	260	10	260	10	y	0.95	248	12	248	12	y	0.99	289	2	289	2	y	0.98	208	4	208	4	y	0.97	364	11	364	11	y	0.98	170	3	170	3	y	0.97	340	12	340	12	y	0.98	159	3	159	3	y	0.95	236	13	236	13	y	0.96	342	13	342	13	y	0.99	285	3	285	3	y	0.98	291	7	291	7	y	ENSMUSG00000025499.19	Hras	chr7	protein_coding	Harvey rat sarcoma virus oncogene
known_NIR_16889	chr7	140771380;140771949	140771868;140772044	-	140771380	140772044	cassetteExon	ENSMUST00000026572.11	known	0.04	11.5	260	10;13	260	y	0.04	9.5	248	12;7	248	y	0.02	5.5	289	2;9	289	y	0.03	6.0	208	4;8	208	y	0.04	13.5	364	11;16	364	y	0.03	6.0	170	3;9	170	y	0.04	15.5	340	12;19	340	y	0.06	9.5	159	3;16	159	y	0.05	12.0	236	13;11	236	y	0.04	14.0	342	13;15	342	y	0.02	6.5	285	3;10	285	y	0.02	7.0	291	7;7	291	y	ENSMUSG00000025499.19	Hras	chr7	protein_coding	Harvey rat sarcoma virus oncogene
known_NIR_16890	chr7	140772253	140772355	-	140772203	140772355	A3SS	ENSMUST00000026572.11	known	0.00	1	263	1	263	n	0.01	3	261	3	261	y	0.03	8	306	8	306	y	0.01	2	224	2	224	y	0.00	1	368	1	368	n	0.02	4	168	4	168	y	0.01	3	319	3	319	y	0.02	3	162	3	162	y	0.02	4	197	4	197	y	0.02	7	363	7	363	y	0.02	6	262	6	262	y	0.00	1	256	1	256	n	ENSMUSG00000025499.19	Hras	chr7	protein_coding	Harvey rat sarcoma virus oncogene
known_NIR_16891	chr7	140777082	140778131	+	140777082	140778187	A3SS	ENSMUST00000084446.9	known	0.33	3	6	3	6	n	0.12	1	7	1	7	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.38	3	5	3	5	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.33	4	8	4	8	y	0.00	0	8	0	8	n	0.11	1	8	1	8	n	0.00	0	6	0	6	n	0.13	2	13	2	13	y	ENSMUSG00000038637.16	Lrrc56	chr7	protein_coding	leucine rich repeat containing 56
known_NIR_16892	chr7	140787163;140787536	140787400;140787744	+	140787163	140787744	cassetteExon	ENSMUST00000084446.9	known	1.00	11.0	0	14;8	0	n	0.67	6.0	3	6;6	3	y	1.00	6.0	0	7;5	0	n	0.87	6.5	1	6;7	1	n	0.87	20.5	3	30;11	3	y	1.00	8.5	0	6;11	0	n	0.83	10.0	2	13;7	2	y	1.00	5.5	0	7;4	0	n	1.00	4.0	0	2;6	0	n	0.95	20.0	1	22;18	1	n	0.91	10.0	1	10;10	1	n	1.00	8.0	0	11;5	0	n	ENSMUSG00000038637.16	Lrrc56	chr7	protein_coding	leucine rich repeat containing 56
known_NIR_16893	chr7	140796024	140796634	+	140795853	140796634	A5SS	ENSMUST00000046890.12	known	0.00	0	6	0	6	n	0.18	2	9	2	9	y	0.00	0	8	0	8	n	0.00	0	15	0	15	n	0.00	0	16	0	16	n	0.00	0	4	0	4	n	0.00	0	21	0	21	n	0.00	0	5	0	5	n	0.22	2	7	2	7	n	0.00	0	19	0	19	n	0.38	3	5	3	5	n	0.11	2	17	2	17	y	ENSMUSG00000038618.13	Rassf7	chr7	protein_coding	Ras association (RalGDS/AF-6) domain family (N-terminal) member 7
known_NIR_16894	chr7	140796147	140796634	+	140795853	140796634	A5SS	ENSMUST00000046890.12	known	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	15	0	15	n	0.00	0	16	0	16	n	0.00	0	4	0	4	n	0.09	2	21	2	21	y	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	19	0	19	n	0.00	0	5	0	5	n	0.00	0	17	0	17	n	ENSMUSG00000038618.13	Rassf7	chr7	protein_coding	Ras association (RalGDS/AF-6) domain family (N-terminal) member 7
known_NIR_16895	chr7	140796172	140796634	+	140795853	140796634	A5SS	ENSMUST00000046890.12	known	0.62	10	6	10	6	y	0.53	10	9	10	9	y	0.56	10	8	10	8	y	0.17	3	15	3	15	y	0.45	13	16	13	16	y	0.50	4	4	4	4	n	0.38	13	21	13	21	y	0.55	6	5	6	5	y	0.65	13	7	13	7	y	0.49	18	19	18	19	y	0.74	14	5	14	5	y	0.23	5	17	5	17	y	ENSMUSG00000038618.13	Rassf7	chr7	protein_coding	Ras association (RalGDS/AF-6) domain family (N-terminal) member 7
known_NIR_16896	chr7	140796172	140796634	+	140796024	140796634	A5SS	ENSMUST00000133763.8	known	1.00	10	0	10	0	n	0.83	10	2	10	2	y	1.00	10	0	10	0	n	1.00	3	0	3	0	n	1.00	13	0	13	0	n	1.00	4	0	4	0	n	1.00	13	0	13	0	n	1.00	6	0	6	0	n	0.87	13	2	13	2	y	1.00	18	0	18	0	n	0.82	14	3	14	3	y	0.71	5	2	5	2	n	ENSMUSG00000038618.13	Rassf7	chr7	protein_coding	Ras association (RalGDS/AF-6) domain family (N-terminal) member 7
known_NIR_16897	chr7	140796172	140796634	+	140796147	140796634	A5SS	ENSMUST00000210993.2	known	1.00	10	0	10	0	n	1.00	10	0	10	0	n	1.00	10	0	10	0	n	1.00	3	0	3	0	n	1.00	13	0	13	0	n	1.00	4	0	4	0	n	0.87	13	2	13	2	y	1.00	6	0	6	0	n	1.00	13	0	13	0	n	1.00	18	0	18	0	n	1.00	14	0	14	0	n	1.00	5	0	5	0	n	ENSMUSG00000038618.13	Rassf7	chr7	protein_coding	Ras association (RalGDS/AF-6) domain family (N-terminal) member 7
known_NIR_16898	chr7	140796764	140796942	+	140796764	140796913	A3SS	ENSMUST00000046890.12	known	0.04	3	82	3	82	y	0.11	7	59	7	59	y	0.04	2	46	2	46	y	0.03	2	69	2	69	y	0.07	8	99	8	99	y	0.03	1	33	1	33	n	0.04	3	73	3	73	y	0.05	2	40	2	40	y	0.07	4	55	4	55	y	0.06	6	98	6	98	y	0.09	9	88	9	88	y	0.04	4	86	4	86	y	ENSMUSG00000038618.13	Rassf7	chr7	protein_coding	Ras association (RalGDS/AF-6) domain family (N-terminal) member 7
known_NIR_16899	chr7	140796764	140797501	+	140796764	140796913	A3SS	ENSMUST00000046890.12	known	0.00	0	82	0	82	n	0.00	0	59	0	59	n	0.00	0	46	0	46	n	0.00	0	69	0	69	n	0.02	2	99	2	99	y	0.00	0	33	0	33	n	0.00	0	73	0	73	n	0.00	0	40	0	40	n	0.00	0	55	0	55	n	0.00	0	98	0	98	n	0.00	0	88	0	88	n	0.00	0	86	0	86	n	ENSMUSG00000038618.13	Rassf7	chr7	protein_coding	Ras association (RalGDS/AF-6) domain family (N-terminal) member 7
known_NIR_16900	chr7	140796764	140797501	+	140796764	140796942	A3SS	ENSMUST00000127613.2	known	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.20	2	8	2	8	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	ENSMUSG00000038618.13	Rassf7	chr7	protein_coding	Ras association (RalGDS/AF-6) domain family (N-terminal) member 7
known_NIR_16901	chr7	140840620	140840828	+	140840620	140840873	A3SS	ENSMUST00000155123.8	known	0.11	4	31	4	31	y	0.24	7	22	7	22	y	0.13	5	33	5	33	y	0.25	5	15	5	15	y	0.14	5	31	5	31	y	0.23	7	24	7	24	y	0.11	3	24	3	24	y	0.29	4	10	4	10	y	0.19	3	13	3	13	y	0.26	10	29	10	29	y	0.23	7	24	7	24	y	0.13	4	27	4	27	y	ENSMUSG00000038611.18	Phrf1	chr7	protein_coding	PHD and ring finger domains 1
known_NIR_16902	chr7	140841027	140841201	+	140841027	140841126	A3SS	ENSMUST00000155123.8	known	0.18	6	28	6	28	y	0.20	7	28	7	28	y	0.22	8	28	8	28	y	0.24	6	19	6	19	y	0.12	6	44	6	44	y	0.24	7	22	7	22	y	0.16	7	37	7	37	y	0.21	5	19	5	19	y	0.35	9	17	9	17	y	0.04	1	25	1	25	n	0.23	6	20	6	20	y	0.27	12	33	12	33	y	ENSMUSG00000038611.18	Phrf1	chr7	protein_coding	PHD and ring finger domains 1
known_NIR_16903	chr7	140843961	140844406	-	140843961;140844228	140844136;140844406	ES	ENSMUST00000106023.8	known	0.09	9	89.5	9	83;96	y	0.13	18	119.0	18	113;125	y	0.28	45	116.5	45	123;110	y	0.19	21	89.5	21	75;104	y	0.20	17	69.0	17	68;70	y	0.23	9	29.5	9	31;28	y	0.20	16	66.0	16	55;77	y	0.17	7	34.5	7	30;39	y	0.23	15	50.5	15	50;51	y	0.27	30	80.0	30	73;87	y	0.23	24	82.0	24	70;94	y	0.20	18	70.0	18	64;76	y	ENSMUSG00000025498.16	Irf7	chr7	protein_coding	interferon regulatory factor 7
known_NIR_16904	chr7	140843961	140844406	-	140844228	140844406	A3SS	ENSMUST00000127223.8	known	0.09	9	96	9	96	y	0.13	18	125	18	125	y	0.29	45	110	45	110	y	0.17	21	104	21	104	y	0.20	17	70	17	70	y	0.24	9	28	9	28	y	0.17	16	77	16	77	y	0.15	7	39	7	39	y	0.23	15	51	15	51	y	0.26	30	87	30	87	y	0.20	24	94	24	94	y	0.19	18	76	18	76	y	ENSMUSG00000025498.16	Irf7	chr7	protein_coding	interferon regulatory factor 7
known_NIR_16905	chr7	140843961	140844988	-	140844696	140844988	A3SS&ES	ENSMUST00000127223.8	known	0.03	4	124	4	124	y	0.00	0	106	0	106	n	0.02	3	156	3	156	y	0.05	5	99	5	99	y	0.00	0	95	0	95	n	0.00	0	33	0	33	n	0.00	0	79	0	79	n	0.00	0	47	0	47	n	0.04	3	67	3	67	y	0.02	2	131	2	131	y	0.00	0	112	0	112	n	0.00	0	102	0	102	n	ENSMUSG00000025498.16	Irf7	chr7	protein_coding	interferon regulatory factor 7
known_NIR_16906	chr7	140843961;140844472	140844136;140844988	-	140843961	140844988	cassetteExon	ENSMUST00000123525.2	known	0.91	41.5	4	83;0	4	n	1.00	56.5	0	113;0	0	n	0.95	62.5	3	123;2	3	y	0.88	37.5	5	75;0	5	n	1.00	34.5	0	68;1	0	n	1.00	16.0	0	31;1	0	n	1.00	27.5	0	55;0	0	n	1.00	15.0	0	30;0	0	n	0.89	25.0	3	50;0	3	n	0.95	36.5	2	73;0	2	n	1.00	35.0	0	70;0	0	n	1.00	32.0	0	64;0	0	n	ENSMUSG00000025498.16	Irf7	chr7	protein_coding	interferon regulatory factor 7
known_NIR_16907	chr7	140843961;140844472	140844406;140844988	-	140843961	140844988	cassetteExon	ENSMUST00000123525.2	known	0.53	4.5	4	9;0	4	n	1.00	9.0	0	18;0	0	n	0.89	23.5	3	45;2	3	y	0.68	10.5	5	21;0	5	n	1.00	9.0	0	17;1	0	n	1.00	5.0	0	9;1	0	n	1.00	8.0	0	16;0	0	n	1.00	3.5	0	7;0	0	n	0.71	7.5	3	15;0	3	n	0.88	15.0	2	30;0	2	n	1.00	12.0	0	24;0	0	n	1.00	9.0	0	18;0	0	n	ENSMUSG00000025498.16	Irf7	chr7	protein_coding	interferon regulatory factor 7
known_NIR_16908	chr7	140843961;140844696	140844406;140844988	-	140843961	140844988	cassetteExon	ENSMUST00000123525.2	known	0.94	66.5	4	9;124	4	y	1.00	62.0	0	18;106	0	n	0.97	100.5	3	45;156	3	y	0.92	60.0	5	21;99	5	y	1.00	56.0	0	17;95	0	n	1.00	21.0	0	9;33	0	n	1.00	47.5	0	16;79	0	n	1.00	27.0	0	7;47	0	n	0.93	41.0	3	15;67	3	y	0.98	80.5	2	30;131	2	y	1.00	68.0	0	24;112	0	n	1.00	60.0	0	18;102	0	n	ENSMUSG00000025498.16	Irf7	chr7	protein_coding	interferon regulatory factor 7
known_NIR_16909	chr7	140844472	140844988	-	140844472;140844696	140844638;140844988	ES	ENSMUST00000106023.8	known	0.00	0	85.5	0	47;124	n	0.00	0	71.0	0	36;106	n	0.02	2	109.0	2	62;156	y	0.00	0	68.0	0	37;99	n	0.02	1	65.5	1	36;95	n	0.04	1	23.0	1	13;33	n	0.00	0	51.5	0	24;79	n	0.00	0	28.5	0	10;47	n	0.00	0	48.0	0	29;67	n	0.00	0	88.0	0	45;131	n	0.00	0	69.0	0	26;112	n	0.00	0	66.5	0	31;102	n	ENSMUSG00000025498.16	Irf7	chr7	protein_coding	interferon regulatory factor 7
known_NIR_16910	chr7	140844472	140844988	-	140844696	140844988	A3SS&ES	ENSMUST00000026571.11	known	0.00	0	124	0	124	n	0.00	0	106	0	106	n	0.01	2	156	2	156	y	0.00	0	99	0	99	n	0.01	1	95	1	95	n	0.03	1	33	1	33	n	0.00	0	79	0	79	n	0.00	0	47	0	47	n	0.00	0	67	0	67	n	0.00	0	131	0	131	n	0.00	0	112	0	112	n	0.00	0	102	0	102	n	ENSMUSG00000025498.16	Irf7	chr7	protein_coding	interferon regulatory factor 7
known_NIR_16911	chr7	140844568	140844638	-	140844472	140844638	A3SS	ENSMUST00000106023.8	known	0.62	78	47	78	47	y	0.65	68	36	68	36	y	0.58	84	62	84	62	y	0.59	54	37	54	37	y	0.66	70	36	70	36	y	0.67	26	13	26	13	y	0.59	35	24	35	24	y	0.69	22	10	22	10	y	0.61	45	29	45	29	y	0.63	77	45	77	45	y	0.74	73	26	73	26	y	0.62	51	31	51	31	y	ENSMUSG00000025498.16	Irf7	chr7	protein_coding	interferon regulatory factor 7
known_NIR_16912	chr7	140849930	140851430	-	140849930	140852176	A5SS	ENSMUST00000210773.2	known	0.97	140	5	140	5	y	0.96	134	5	134	5	y	0.99	182	2	182	2	y	0.95	122	6	122	6	y	0.97	149	4	149	4	y	1.00	112	0	112	0	n	0.98	176	4	176	4	y	1.00	82	0	82	0	n	0.96	94	4	94	4	y	0.93	141	11	141	11	y	0.98	128	2	128	2	y	0.99	128	1	128	1	n	ENSMUSG00000025497.16	Cdhr5	chr7	protein_coding	cadherin-related family member 5
known_NIR_16913	chr7	140849930	140852176	-	140849930;140852098	140852014;140852176	ES	ENSMUST00000080654.7	known	0.03	5	157.0	5	111;203	y	0.03	5	177.5	5	138;217	y	0.01	2	162.0	2	118;206	y	0.03	6	180.5	6	132;229	y	0.02	4	229.0	4	189;269	y	0.00	0	110.0	0	77;143	n	0.02	4	233.5	4	163;304	y	0.00	0	117.5	0	86;149	n	0.03	4	136.0	4	96;176	y	0.05	11	219.0	11	172;266	y	0.01	2	185.0	2	135;235	y	0.00	1	227.0	1	176;278	n	ENSMUSG00000025497.16	Cdhr5	chr7	protein_coding	cadherin-related family member 5
known_NIR_16914	chr7	140849930;140851633	140851430;140852014	-	140849930	140852014	cassetteExon	ENSMUST00000080654.7	known	0.41	77.5	111	140;15	111	y	0.36	76.5	138	134;19	138	y	0.48	109.0	118	182;36	118	y	0.36	73.5	132	122;25	132	y	0.31	86.5	189	149;24	189	y	0.46	66.0	77	112;20	77	y	0.38	101.5	163	176;27	163	y	0.36	48.0	86	82;14	86	y	0.37	55.5	96	94;17	96	y	0.34	87.0	172	141;33	172	y	0.35	74.0	135	128;20	135	y	0.31	79.0	176	128;30	176	y	ENSMUSG00000025497.16	Cdhr5	chr7	protein_coding	cadherin-related family member 5
known_NIR_16915	chr7	140849930;140851915	140851430;140852014	-	140849930	140852014	cassetteExon	ENSMUST00000080654.7	known	0.47	100.0	111	140;60	111	y	0.39	88.0	138	134;42	138	y	0.55	141.5	118	182;101	118	y	0.41	93.5	132	122;65	132	y	0.40	127.5	189	149;106	189	y	0.53	86.0	77	112;60	77	y	0.46	139.5	163	176;103	163	y	0.41	60.0	86	82;38	86	y	0.42	70.0	96	94;46	96	y	0.40	113.5	172	141;86	172	y	0.42	97.5	135	128;67	135	y	0.37	104.0	176	128;80	176	y	ENSMUSG00000025497.16	Cdhr5	chr7	protein_coding	cadherin-related family member 5
known_NIR_16916	chr7	140851633	140852014	-	140851915	140852014	A3SS	ENSMUST00000167263.9	known	0.20	15	60	15	60	y	0.31	19	42	19	42	y	0.26	36	101	36	101	y	0.28	25	65	25	65	y	0.18	24	106	24	106	y	0.25	20	60	20	60	y	0.21	27	103	27	103	y	0.27	14	38	14	38	y	0.27	17	46	17	46	y	0.28	33	86	33	86	y	0.23	20	67	20	67	y	0.27	30	80	30	80	y	ENSMUSG00000025497.16	Cdhr5	chr7	protein_coding	cadherin-related family member 5
known_NIR_16917	chr7	140877529	140890675	-	140877529;140881602	140881513;140890675	ES	ENSMUST00000080553.9	known	0.15	5	28.0	5	39;17	y	0.17	8	39.0	8	54;24	y	0.14	4	25.0	4	31;19	y	0.11	4	31.5	4	42;21	y	0.05	2	37.5	2	41;34	y	0.26	5	14.5	5	18;11	y	0.07	3	40.5	3	45;36	y	0.12	3	22.0	3	34;10	y	0.09	3	29.5	3	35;24	y	0.06	3	48.0	3	62;34	y	0.08	3	34.0	3	32;36	y	0.03	1	38.0	1	45;31	n	ENSMUSG00000058886.10	Deaf1	chr7	protein_coding	DEAF1, transcription factor
known_NIR_16918	chr7	140877529	140890675	-	140881599	140890675	3pMXE	ENSMUST00000211537.2	known	0.56	5	4	5	4	n	0.67	8	4	8	4	y	0.57	4	3	4	3	n	0.57	4	3	4	3	n	0.40	2	3	2	3	n	1.00	5	0	5	0	n	0.60	3	2	3	2	n	0.75	3	1	3	1	n	0.50	3	3	3	3	n	1.00	3	0	3	0	n	0.43	3	4	3	4	n	1.00	1	0	1	0	n	ENSMUSG00000058886.10	Deaf1	chr7	protein_coding	DEAF1, transcription factor
known_NIR_16919	chr7	140877529;140881599	140881513;140890675	-	140877529	140890675	cassetteExon	ENSMUST00000209600.2	known	0.81	21.5	5	39;4	5	y	0.78	29.0	8	54;4	8	y	0.81	17.0	4	31;3	4	y	0.85	22.5	4	42;3	4	y	0.92	22.0	2	41;3	2	y	0.64	9.0	5	18;0	5	n	0.89	23.5	3	45;2	3	y	0.85	17.5	3	34;1	3	n	0.86	19.0	3	35;3	3	y	0.91	31.0	3	62;0	3	n	0.86	18.0	3	32;4	3	y	0.96	22.5	1	45;0	1	n	ENSMUSG00000058886.10	Deaf1	chr7	protein_coding	DEAF1, transcription factor
known_NIR_16920	chr7	140881599	140890675	-	140881602	140890675	A3SS	ENSMUST00000080553.9	known	0.19	4	17	4	17	y	0.14	4	24	4	24	y	0.14	3	19	3	19	y	0.12	3	21	3	21	y	0.08	3	34	3	34	y	0.00	0	11	0	11	n	0.05	2	36	2	36	y	0.09	1	10	1	10	n	0.11	3	24	3	24	y	0.00	0	34	0	34	n	0.10	4	36	4	36	y	0.00	0	31	0	31	n	ENSMUSG00000058886.10	Deaf1	chr7	protein_coding	DEAF1, transcription factor
known_NIR_16921	chr7	140904092;140904529	140904355;140907192	-	140904092	140907192	cassetteExon	ENSMUST00000080553.9	known	0.23	4.5	15	9;0	15	n	0.16	2.5	13	3;2	13	y	0.36	4.5	8	8;1	8	n	0.23	5.5	18	6;5	18	y	0.34	10.5	20	19;2	20	y	0.20	1.5	6	2;1	6	n	0.39	9.0	14	18;0	14	n	0.40	4.0	6	7;1	6	n	0.31	5.5	12	11;0	12	n	0.19	4.5	19	8;1	19	n	0.35	11.5	21	20;3	21	y	0.11	2.0	17	3;1	17	n	ENSMUSG00000058886.10	Deaf1	chr7	protein_coding	DEAF1, transcription factor
known_NIR_16922	chr7	140908179;140911474	140911331;140912823	+	140908179	140912823	cassetteExon	ENSMUST00000155657.2	known	0.79	18.5	5	13;24	5	y	0.83	19.5	4	11;28	4	y	0.74	11.5	4	6;17	4	y	0.88	21.5	3	5;38	3	y	0.89	25.5	3	23;28	3	y	0.81	17.0	4	12;22	4	y	0.74	23.0	8	14;32	8	y	0.56	10.0	8	6;14	8	y	0.76	19.0	6	16;22	6	y	0.88	28.0	4	22;34	4	y	0.76	18.5	6	11;26	6	y	0.87	26.5	4	23;30	4	y	ENSMUSG00000025505.17	Tmem80	chr7	protein_coding	transmembrane protein 80
known_NIR_16923	chr7	140913644	140915758	+	140913644;140914016	140913924;140915758	ES	ENSMUST00000126510.8	known	0.00	0	16.0	0	7;25	n	0.00	0	13.0	0	9;17	n	0.00	0	17.5	0	13;22	n	0.00	0	15.5	0	18;13	n	0.13	2	13.0	2	11;15	y	0.18	2	9.0	2	4;14	y	0.00	0	20.0	0	16;24	n	0.00	0	9.5	0	5;14	n	0.00	0	12.5	0	6;19	n	0.16	5	26.0	5	21;31	y	0.00	0	16.5	0	11;22	n	0.00	0	24.0	0	15;33	n	ENSMUSG00000025505.17	Tmem80	chr7	protein_coding	transmembrane protein 80
known_NIR_16924	chr7	140913644	140915758	+	140914016	140915758	A5SS	ENSMUST00000134221.2	known	0.00	0	25	0	25	n	0.00	0	17	0	17	n	0.00	0	22	0	22	n	0.00	0	13	0	13	n	0.12	2	15	2	15	y	0.12	2	14	2	14	y	0.00	0	24	0	24	n	0.00	0	14	0	14	n	0.00	0	19	0	19	n	0.14	5	31	5	31	y	0.00	0	22	0	22	n	0.00	0	33	0	33	n	ENSMUSG00000025505.17	Tmem80	chr7	protein_coding	transmembrane protein 80
known_NIR_16925	chr7	140922903	140923656	+	140922903	140934859	A3SS	ENSMUST00000026577.13	known	0.00	0	79	0	79	n	0.00	0	69	0	69	n	0.00	0	89	0	89	n	0.01	1	102	1	102	n	0.00	0	166	0	166	n	0.02	1	46	1	46	n	0.00	0	135	0	135	n	0.00	0	61	0	61	n	0.00	0	90	0	90	n	0.00	0	115	0	115	n	0.00	0	91	0	91	n	0.01	2	159	2	159	y	ENSMUSG00000025504.15	Eps8l2	chr7	protein_coding	EPS8-like 2
known_NIR_16926	chr7	140941087	140941294	+	140941034	140941294	A5SS	ENSMUST00000026577.13	known	0.02	2	91	2	91	y	0.07	6	77	6	77	y	0.02	2	81	2	81	y	0.01	1	116	1	116	n	0.01	1	144	1	144	n	0.00	0	58	0	58	n	0.03	3	89	3	89	y	0.00	0	59	0	59	n	0.01	1	123	1	123	n	0.03	4	139	4	139	y	0.01	1	128	1	128	n	0.01	2	169	2	169	y	ENSMUSG00000025504.15	Eps8l2	chr7	protein_coding	EPS8-like 2
known_NIR_16927	chr7	141011171	141011415	-	141011171;141011338	141011263;141011415	ES	ENSMUST00000019226.14	known	0.01	2	243.5	2	267;220	y	0.00	0	197.0	0	213;181	n	0.02	10	450.0	10	455;445	y	0.01	3	257.5	3	255;260	y	0.00	1	339.0	1	365;313	n	0.00	1	262.5	1	285;240	n	0.02	6	364.0	6	392;336	y	0.00	0	246.0	0	242;250	n	0.00	0	206.5	0	222;191	n	0.01	5	372.0	5	383;361	y	0.00	0	246.0	0	266;226	n	0.00	1	369.0	1	403;335	n	ENSMUSG00000019082.19	Slc25a22	chr7	protein_coding	solute carrier family 25 (mitochondrial carrier, glutamate), member 22
known_NIR_16928	chr7	141011171	141011415	-	141011338	141011415	3pMXE	ENSMUST00000144174.8	known	0.01	2	220	2	220	y	0.00	0	181	0	181	n	0.02	10	445	10	445	y	0.01	3	260	3	260	y	0.00	1	313	1	313	n	0.00	1	240	1	240	n	0.02	6	336	6	336	y	0.00	0	250	0	250	n	0.00	0	191	0	191	n	0.01	5	361	5	361	y	0.00	0	226	0	226	n	0.00	1	335	1	335	n	ENSMUSG00000019082.19	Slc25a22	chr7	protein_coding	solute carrier family 25 (mitochondrial carrier, glutamate), member 22
known_NIR_16929	chr7	141011462	141011934	-	141011826	141011934	A3SS&ES	ENSMUST00000019226.14	known	0.00	0	171	0	171	n	0.00	0	147	0	147	n	0.00	0	291	0	291	n	0.00	0	253	0	253	n	0.00	0	266	0	266	n	0.00	0	218	0	218	n	0.00	0	262	0	262	n	0.01	2	208	2	208	y	0.00	0	162	0	162	n	0.00	0	325	0	325	n	0.00	0	195	0	195	n	0.00	0	312	0	312	n	ENSMUSG00000019082.19	Slc25a22	chr7	protein_coding	solute carrier family 25 (mitochondrial carrier, glutamate), member 22
known_NIR_16930	chr7	141012048	141012576	-	141012052	141012576	A3SS	ENSMUST00000019226.14	known	0.00	0	210	0	210	n	0.02	5	216	5	216	y	0.00	0	454	0	454	n	0.00	0	283	0	283	n	0.01	5	348	5	348	y	0.02	6	245	6	245	y	0.01	2	353	2	353	y	0.00	0	249	0	249	n	0.00	0	210	0	210	n	0.00	0	363	0	363	n	0.00	0	230	0	230	n	0.02	9	450	9	450	y	ENSMUSG00000019082.19	Slc25a22	chr7	protein_coding	solute carrier family 25 (mitochondrial carrier, glutamate), member 22
known_NIR_16931	chr7	141012048	141012576	-	141012071	141012576	A3SS	ENSMUST00000124266.8	known	0.00	0	3	0	3	n	0.56	5	4	5	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	5	0	5	0	n	0.46	6	7	6	7	y	0.40	2	3	2	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.64	9	5	9	5	y	ENSMUSG00000019082.19	Slc25a22	chr7	protein_coding	solute carrier family 25 (mitochondrial carrier, glutamate), member 22
known_NIR_16932	chr7	141012052	141012527	-	141012052	141012576	A5SS	ENSMUST00000019226.14	known	0.01	2	210	2	210	y	0.00	0	216	0	216	n	0.00	0	454	0	454	n	0.00	0	283	0	283	n	0.00	0	348	0	348	n	0.00	0	245	0	245	n	0.01	3	353	3	353	y	0.00	0	249	0	249	n	0.01	2	210	2	210	y	0.00	0	363	0	363	n	0.00	0	230	0	230	n	0.00	0	450	0	450	n	ENSMUSG00000019082.19	Slc25a22	chr7	protein_coding	solute carrier family 25 (mitochondrial carrier, glutamate), member 22
known_NIR_16933	chr7	141012071	141012576	-	141012052	141012576	A3SS	ENSMUST00000019226.14	known	0.01	3	210	3	210	y	0.02	4	216	4	216	y	0.00	1	454	1	454	n	0.01	2	283	2	283	y	0.00	0	348	0	348	n	0.03	7	245	7	245	y	0.01	3	353	3	353	y	0.02	5	249	5	249	y	0.00	0	210	0	210	n	0.01	4	363	4	363	y	0.00	1	230	1	230	n	0.01	5	450	5	450	y	ENSMUSG00000019082.19	Slc25a22	chr7	protein_coding	solute carrier family 25 (mitochondrial carrier, glutamate), member 22
known_NIR_16934	chr7	141014242	141014444	-	141014242	141017482	A5SS	ENSMUST00000019226.14	known	0.00	0	17	0	17	n	0.00	0	32	0	32	n	0.12	3	21	3	21	y	0.00	0	26	0	26	n	0.00	0	34	0	34	n	0.12	3	23	3	23	y	0.03	1	34	1	34	n	0.11	2	17	2	17	y	0.00	0	23	0	23	n	0.08	3	35	3	35	y	0.18	4	18	4	18	y	0.00	0	31	0	31	n	ENSMUSG00000019082.19	Slc25a22	chr7	protein_coding	solute carrier family 25 (mitochondrial carrier, glutamate), member 22
known_NIR_16935	chr7	141014242	141014500	-	141014242	141015201	A5SS	ENSMUST00000138865.8	known	0.00	0	41	0	41	n	0.00	0	29	0	29	n	0.06	5	85	5	85	y	0.02	1	44	1	44	n	0.05	3	61	3	61	y	0.09	5	49	5	49	y	0.10	6	54	6	54	y	0.05	3	60	3	60	y	0.05	2	36	2	36	y	0.05	3	63	3	63	y	0.07	3	41	3	41	y	0.03	2	67	2	67	y	ENSMUSG00000019082.19	Slc25a22	chr7	protein_coding	solute carrier family 25 (mitochondrial carrier, glutamate), member 22
known_NIR_16936	chr7	141014242	141014500	-	141014242	141017482	A5SS	ENSMUST00000019226.14	known	0.00	0	17	0	17	n	0.00	0	32	0	32	n	0.19	5	21	5	21	y	0.04	1	26	1	26	n	0.08	3	34	3	34	y	0.18	5	23	5	23	y	0.15	6	34	6	34	y	0.15	3	17	3	17	y	0.08	2	23	2	23	y	0.08	3	35	3	35	y	0.14	3	18	3	18	y	0.06	2	31	2	31	y	ENSMUSG00000019082.19	Slc25a22	chr7	protein_coding	solute carrier family 25 (mitochondrial carrier, glutamate), member 22
known_NIR_16937	chr7	141014242	141015201	-	141014242	141014444	5pMXE	ENSMUST00000106007.10	known	1.00	41	0	41	0	n	1.00	29	0	29	0	n	0.97	85	3	85	3	y	1.00	44	0	44	0	n	1.00	61	0	61	0	n	0.94	49	3	49	3	y	0.98	54	1	54	1	n	0.97	60	2	60	2	y	1.00	36	0	36	0	n	0.95	63	3	63	3	y	0.91	41	4	41	4	y	1.00	67	0	67	0	n	ENSMUSG00000019082.19	Slc25a22	chr7	protein_coding	solute carrier family 25 (mitochondrial carrier, glutamate), member 22
known_NIR_16938	chr7	141014242	141015201	-	141014242	141017482	A5SS	ENSMUST00000019226.14	known	0.71	41	17	41	17	y	0.48	29	32	29	32	y	0.80	85	21	85	21	y	0.63	44	26	44	26	y	0.64	61	34	61	34	y	0.68	49	23	49	23	y	0.61	54	34	54	34	y	0.78	60	17	60	17	y	0.61	36	23	36	23	y	0.64	63	35	63	35	y	0.69	41	18	41	18	y	0.68	67	31	67	31	y	ENSMUSG00000019082.19	Slc25a22	chr7	protein_coding	solute carrier family 25 (mitochondrial carrier, glutamate), member 22
known_NIR_16939	chr7	141027654	141027821	+	141027620	141027821	A5SS	ENSMUST00000084434.11	known	0.00	0	1934	0	1934	n	0.00	1	1938	1	1938	n	0.00	0	2902	0	2902	n	0.00	0	1575	0	1575	n	0.00	0	2401	0	2401	n	0.00	2	1645	2	1645	y	0.00	1	2498	1	2498	n	0.00	0	1583	0	1583	n	0.00	0	1314	0	1314	n	0.00	1	1874	1	1874	n	0.00	0	1810	0	1810	n	0.00	1	1670	1	1670	n	ENSMUSG00000025508.14	Rplp2	chr7	protein_coding	ribosomal protein, large P2
known_NIR_16940	chr7	141035386;141036562	141036481;141037186	+	141035386	141037186	cassetteExon	ENSMUST00000164016.8	known	0.07	6.5	83	7;6	83	y	0.02	1.5	66	1;2	66	n	0.00	0.0	108	0;0	108	n	0.04	5.0	109	3;7	109	y	0.02	3.5	141	3;4	141	y	0.02	1.5	88	2;1	88	n	0.03	6.0	208	5;7	208	y	0.01	0.5	81	1;0	81	n	0.04	3.5	75	3;4	75	y	0.04	6.0	134	5;7	134	y	0.05	5.0	89	4;6	89	y	0.03	3.5	129	5;2	129	y	ENSMUSG00000025509.16	Pnpla2	chr7	protein_coding	patatin-like phospholipase domain containing 2
known_NIR_16941	chr7	141037570	141037997	+	141037570	141037918	A3SS	ENSMUST00000164016.8	known	0.00	0	170	0	170	n	0.00	0	135	0	135	n	0.03	5	182	5	182	y	0.02	4	210	4	210	y	0.00	0	200	0	200	n	0.03	4	137	4	137	y	0.01	4	339	4	339	y	0.00	0	117	0	117	n	0.00	0	156	0	156	n	0.00	0	265	0	265	n	0.02	3	169	3	169	y	0.00	0	219	0	219	n	ENSMUSG00000025509.16	Pnpla2	chr7	protein_coding	patatin-like phospholipase domain containing 2
known_NIR_16942	chr7	141038403	141038758	+	141038403	141038505	3pMXE	ENSMUST00000169723.2	known	0.00	0	189	0	189	n	0.00	0	187	0	187	n	0.00	1	210	1	210	n	0.00	0	215	0	215	n	0.00	0	247	0	247	n	0.00	0	142	0	142	n	0.00	0	474	0	474	n	0.02	2	120	2	120	y	0.00	0	191	0	191	n	0.00	0	277	0	277	n	0.00	0	240	0	240	n	0.00	0	239	0	239	n	ENSMUSG00000025509.16	Pnpla2	chr7	protein_coding	patatin-like phospholipase domain containing 2
known_NIR_16943	chr7	141038403	141038758	+	141038403;141038672	141038505;141038758	ES	ENSMUST00000164016.8	known	0.00	0	201.5	0	189;214	n	0.00	0	192.0	0	187;197	n	0.00	1	216.0	1	210;222	n	0.00	0	219.5	0	215;224	n	0.00	0	265.0	0	247;283	n	0.00	0	151.0	0	142;160	n	0.00	0	469.0	0	474;464	n	0.02	2	117.0	2	120;114	y	0.00	0	189.5	0	191;188	n	0.00	0	307.0	0	277;337	n	0.00	0	233.0	0	240;226	n	0.00	0	258.0	0	239;277	n	ENSMUSG00000025509.16	Pnpla2	chr7	protein_coding	patatin-like phospholipase domain containing 2
known_NIR_16944	chr7	141045269;141045750	141045432;141045959	+	141045269	141045959	cassetteExon	ENSMUST00000171994.2	known	1.00	5.0	0	3;7	0	n	1.00	9.5	0	11;8	0	n	0.86	12.0	2	7;17	2	y	1.00	6.5	0	7;6	0	n	1.00	19.0	0	26;12	0	n	1.00	7.5	0	6;9	0	n	1.00	20.5	0	21;20	0	n	1.00	5.0	0	6;4	0	n	1.00	4.5	0	5;4	0	n	0.86	6.0	1	2;10	1	n	1.00	8.5	0	6;11	0	n	1.00	8.0	0	6;10	0	n	ENSMUSG00000048200.13	Cracr2b	chr7	protein_coding	calcium release activated channel regulator 2B
known_NIR_16945	chr7	141047379	141048332	+	141047497	141048332	A5SS	ENSMUST00000211522.2	known	0.53	58	52	58	52	y	0.48	32	34	32	34	y	0.55	57	46	57	46	y	0.63	71	41	71	41	y	0.56	95	76	95	76	y	0.68	45	21	45	21	y	0.59	92	65	92	65	y	0.59	44	31	44	31	y	0.69	74	34	74	34	y	0.58	78	57	78	57	y	0.53	56	49	56	49	y	0.54	68	58	68	58	y	ENSMUSG00000025510.15	Cd151	chr7	protein_coding	CD151 antigen
known_NIR_16946	chr7	141047379	141049168	+	141048459	141049168	A5SS&ES	ENSMUST00000106000.10	known	0.00	0	98	0	98	n	0.01	1	90	1	90	n	0.02	2	131	2	131	y	0.02	2	103	2	103	y	0.00	0	166	0	166	n	0.05	4	70	4	70	y	0.00	0	158	0	158	n	0.01	1	102	1	102	n	0.04	3	82	3	82	y	0.00	0	134	0	134	n	0.01	1	111	1	111	n	0.00	0	134	0	134	n	ENSMUSG00000025510.15	Cd151	chr7	protein_coding	CD151 antigen
known_NIR_16947	chr7	141047379;141048459	141048332;141049168	+	141047379	141049168	cassetteExon	ENSMUST00000209892.2	known	1.00	78.0	0	58;98	0	n	0.98	61.0	1	32;90	1	n	0.98	94.0	2	57;131	2	y	0.98	87.0	2	71;103	2	y	1.00	130.5	0	95;166	0	n	0.93	57.5	4	45;70	4	y	1.00	125.0	0	92;158	0	n	0.99	73.0	1	44;102	1	n	0.96	78.0	3	74;82	3	y	1.00	106.0	0	78;134	0	n	0.99	83.5	1	56;111	1	n	1.00	101.0	0	68;134	0	n	ENSMUSG00000025510.15	Cd151	chr7	protein_coding	CD151 antigen
known_NIR_16948	chr7	141047379;141048809	141048332;141049168	+	141047379	141049168	cassetteExon	ENSMUST00000209892.2	known	1.00	30.5	0	58;3	0	n	0.94	17.0	1	32;2	1	n	0.94	32.0	2	57;7	2	y	0.95	37.5	2	71;4	2	y	1.00	49.0	0	95;3	0	n	0.85	23.5	4	45;2	4	y	1.00	49.5	0	92;7	0	n	0.96	22.0	1	44;0	1	n	0.93	37.5	3	74;1	3	n	1.00	42.5	0	78;7	0	n	0.97	30.0	1	56;4	1	n	1.00	34.0	0	68;0	0	n	ENSMUSG00000025510.15	Cd151	chr7	protein_coding	CD151 antigen
known_NIR_16949	chr7	141047497	141049168	+	141047497	141048332	3pMXE	ENSMUST00000211522.2	known	0.00	0	52	0	52	n	0.00	0	34	0	34	n	0.02	1	46	1	46	n	0.05	2	41	2	41	y	0.00	0	76	0	76	n	0.00	0	21	0	21	n	0.00	0	65	0	65	n	0.00	0	31	0	31	n	0.03	1	34	1	34	n	0.00	0	57	0	57	n	0.00	0	49	0	49	n	0.00	0	58	0	58	n	ENSMUSG00000025510.15	Cd151	chr7	protein_coding	CD151 antigen
known_NIR_16950	chr7	141047497	141049168	+	141047497;141048459	141048332;141049168	ES	ENSMUST00000106000.10	known	0.00	0	75.0	0	52;98	n	0.00	0	62.0	0	34;90	n	0.01	1	88.5	1	46;131	n	0.03	2	72.0	2	41;103	y	0.00	0	121.0	0	76;166	n	0.00	0	45.5	0	21;70	n	0.00	0	111.5	0	65;158	n	0.00	0	66.5	0	31;102	n	0.02	1	58.0	1	34;82	n	0.00	0	95.5	0	57;134	n	0.00	0	80.0	0	49;111	n	0.00	0	96.0	0	58;134	n	ENSMUSG00000025510.15	Cd151	chr7	protein_coding	CD151 antigen
known_NIR_16951	chr7	141047497	141049168	+	141048459	141049168	A5SS&ES	ENSMUST00000177840.9	known	0.00	0	98	0	98	n	0.00	0	90	0	90	n	0.01	1	131	1	131	n	0.02	2	103	2	103	y	0.00	0	166	0	166	n	0.00	0	70	0	70	n	0.00	0	158	0	158	n	0.00	0	102	0	102	n	0.01	1	82	1	82	n	0.00	0	134	0	134	n	0.00	0	111	0	111	n	0.00	0	134	0	134	n	ENSMUSG00000025510.15	Cd151	chr7	protein_coding	CD151 antigen
known_NIR_16952	chr7	141047497;141048809	141048332;141049168	+	141047497	141049168	cassetteExon	ENSMUST00000209988.2	known	1.00	27.5	0	52;3	0	n	1.00	18.0	0	34;2	0	n	0.96	26.5	1	46;7	1	n	0.92	22.5	2	41;4	2	y	1.00	39.5	0	76;3	0	n	1.00	11.5	0	21;2	0	n	1.00	36.0	0	65;7	0	n	1.00	15.5	0	31;0	0	n	0.95	17.5	1	34;1	1	n	1.00	32.0	0	57;7	0	n	1.00	26.5	0	49;4	0	n	1.00	29.0	0	58;0	0	n	ENSMUSG00000025510.15	Cd151	chr7	protein_coding	CD151 antigen
known_NIR_16953	chr7	141048809	141049168	+	141048459	141049168	A5SS	ENSMUST00000106000.10	known	0.03	3	98	3	98	y	0.02	2	90	2	90	y	0.05	7	131	7	131	y	0.04	4	103	4	103	y	0.02	3	166	3	166	y	0.03	2	70	2	70	y	0.04	7	158	7	158	y	0.00	0	102	0	102	n	0.01	1	82	1	82	n	0.05	7	134	7	134	y	0.03	4	111	4	111	y	0.00	0	134	0	134	n	ENSMUSG00000025510.15	Cd151	chr7	protein_coding	CD151 antigen
known_NIR_16954	chr7	141055473	141062400	+	141055410	141062400	A5SS	ENSMUST00000026585.14	known	0.01	2	206	2	206	y	0.00	0	244	0	244	n	0.01	1	125	1	125	n	0.01	3	269	3	269	y	0.00	0	206	0	206	n	0.00	0	49	0	49	n	0.00	0	187	0	187	n	0.00	0	39	0	39	n	0.00	0	154	0	154	n	0.01	3	299	3	299	y	0.03	5	181	5	181	y	0.01	3	278	3	278	y	ENSMUSG00000025511.16	Tspan4	chr7	protein_coding	tetraspanin 4
known_NIR_16955	chr7	141055664	141062400	+	141055410	141062400	A5SS	ENSMUST00000026585.14	known	0.00	0	206	0	206	n	0.00	0	244	0	244	n	0.00	0	125	0	125	n	0.00	0	269	0	269	n	0.01	3	206	3	206	y	0.00	0	49	0	49	n	0.01	2	187	2	187	y	0.00	0	39	0	39	n	0.00	0	154	0	154	n	0.00	0	299	0	299	n	0.01	1	181	1	181	n	0.00	0	278	0	278	n	ENSMUSG00000025511.16	Tspan4	chr7	protein_coding	tetraspanin 4
known_NIR_16956	chr7	141055872	141062400	+	141055410	141062400	A5SS	ENSMUST00000026585.14	known	0.08	19	206	19	206	y	0.02	6	244	6	244	y	0.04	5	125	5	125	y	0.04	11	269	11	269	y	0.04	8	206	8	206	y	0.06	3	49	3	49	y	0.04	8	187	8	187	y	0.00	0	39	0	39	n	0.07	12	154	12	154	y	0.03	8	299	8	299	y	0.04	7	181	7	181	y	0.04	12	278	12	278	y	ENSMUSG00000025511.16	Tspan4	chr7	protein_coding	tetraspanin 4
known_NIR_16957	chr7	141055872	141062400	+	141055473	141062400	A5SS	ENSMUST00000138092.8	known	0.90	19	2	19	2	y	1.00	6	0	6	0	n	0.83	5	1	5	1	n	0.79	11	3	11	3	y	1.00	8	0	8	0	n	1.00	3	0	3	0	n	1.00	8	0	8	0	n	-	-	-	-	-	-	1.00	12	0	12	0	n	0.73	8	3	8	3	y	0.58	7	5	7	5	y	0.80	12	3	12	3	y	ENSMUSG00000025511.16	Tspan4	chr7	protein_coding	tetraspanin 4
known_NIR_16958	chr7	141055872	141062400	+	141055664	141062400	A5SS	ENSMUST00000146305.8	known	1.00	19	0	19	0	n	1.00	6	0	6	0	n	1.00	5	0	5	0	n	1.00	11	0	11	0	n	0.73	8	3	8	3	y	1.00	3	0	3	0	n	0.80	8	2	8	2	y	-	-	-	-	-	-	1.00	12	0	12	0	n	1.00	8	0	8	0	n	0.88	7	1	7	1	n	1.00	12	0	12	0	n	ENSMUSG00000025511.16	Tspan4	chr7	protein_coding	tetraspanin 4
known_NIR_16959	chr7	141056391	141062400	+	141055410	141062400	A5SS	ENSMUST00000026585.14	known	0.09	20	206	20	206	y	0.06	16	244	16	244	y	0.13	18	125	18	125	y	0.06	17	269	17	269	y	0.10	24	206	24	206	y	0.17	10	49	10	49	y	0.11	24	187	24	187	y	0.22	11	39	11	39	y	0.06	9	154	9	154	y	0.09	30	299	30	299	y	0.08	15	181	15	181	y	0.06	18	278	18	278	y	ENSMUSG00000025511.16	Tspan4	chr7	protein_coding	tetraspanin 4
known_NIR_16960	chr7	141056391	141062400	+	141055473	141062400	A5SS	ENSMUST00000138092.8	known	0.91	20	2	20	2	y	1.00	16	0	16	0	n	0.95	18	1	18	1	n	0.85	17	3	17	3	y	1.00	24	0	24	0	n	1.00	10	0	10	0	n	1.00	24	0	24	0	n	1.00	11	0	11	0	n	1.00	9	0	9	0	n	0.91	30	3	30	3	y	0.75	15	5	15	5	y	0.86	18	3	18	3	y	ENSMUSG00000025511.16	Tspan4	chr7	protein_coding	tetraspanin 4
known_NIR_16961	chr7	141056391	141062400	+	141055664	141062400	A5SS	ENSMUST00000146305.8	known	1.00	20	0	20	0	n	1.00	16	0	16	0	n	1.00	18	0	18	0	n	1.00	17	0	17	0	n	0.89	24	3	24	3	y	1.00	10	0	10	0	n	0.92	24	2	24	2	y	1.00	11	0	11	0	n	1.00	9	0	9	0	n	1.00	30	0	30	0	n	0.94	15	1	15	1	n	1.00	18	0	18	0	n	ENSMUSG00000025511.16	Tspan4	chr7	protein_coding	tetraspanin 4
known_NIR_16962	chr7	141056391	141062400	+	141055872	141062400	A5SS	ENSMUST00000140858.8	known	0.51	20	19	20	19	y	0.73	16	6	16	6	y	0.78	18	5	18	5	y	0.61	17	11	17	11	y	0.75	24	8	24	8	y	0.77	10	3	10	3	y	0.75	24	8	24	8	y	1.00	11	0	11	0	n	0.43	9	12	9	12	y	0.79	30	8	30	8	y	0.68	15	7	15	7	y	0.60	18	12	18	12	y	ENSMUSG00000025511.16	Tspan4	chr7	protein_coding	tetraspanin 4
known_NIR_16963	chr7	141076594	141093647	-	141076594	141102522	A5SS	ENSMUST00000026586.13	known	1.00	117	0	117	0	n	1.00	178	0	178	0	n	1.00	161	0	161	0	n	1.00	139	0	139	0	n	1.00	239	1	239	1	n	0.99	150	1	150	1	n	1.00	200	0	200	0	n	1.00	151	0	151	0	n	1.00	119	0	119	0	n	0.99	156	2	156	2	y	1.00	152	0	152	0	n	1.00	148	0	148	0	n	ENSMUSG00000025512.16	Chid1	chr7	protein_coding	chitinase domain containing 1
known_NIR_16964	chr7	141076594;141081508	141081453;141093647	-	141076594	141093647	cassetteExon	ENSMUST00000153191.8	known	0.00	0.5	117	1;0	117	n	0.02	3.0	178	2;4	178	y	0.00	0.0	161	0;0	161	n	0.00	0.0	139	0;0	139	n	0.01	2.0	239	3;1	239	n	0.00	0.0	150	0;0	150	n	0.01	1.5	200	2;1	200	n	0.00	0.0	151	0;0	151	n	0.01	1.0	119	2;0	119	n	0.01	1.0	156	1;1	156	n	0.01	1.5	152	0;3	152	n	0.01	1.5	148	0;3	148	n	ENSMUSG00000025512.16	Chid1	chr7	protein_coding	chitinase domain containing 1
known_NIR_16965	chr7	141091952	141093647	-	141076594	141093647	A3SS	ENSMUST00000153191.8	known	0.03	3	117	3	117	y	0.02	4	178	4	178	y	0.00	0	161	0	161	n	0.01	1	139	1	139	n	0.01	2	239	2	239	y	0.01	2	150	2	150	y	0.00	0	200	0	200	n	0.00	0	151	0	151	n	0.00	0	119	0	119	n	0.02	3	156	3	156	y	0.01	2	152	2	152	y	0.01	1	148	1	148	n	ENSMUSG00000025512.16	Chid1	chr7	protein_coding	chitinase domain containing 1
known_NIR_16966	chr7	141095416	141102522	-	141076594	141102522	A3SS	ENSMUST00000026586.13	known	1.00	135	0	135	0	n	1.00	151	0	151	0	n	1.00	142	0	142	0	n	1.00	163	0	163	0	n	1.00	221	1	221	1	n	0.99	135	1	135	1	n	1.00	203	0	203	0	n	1.00	124	0	124	0	n	1.00	95	0	95	0	n	0.99	172	2	172	2	y	1.00	124	0	124	0	n	1.00	117	0	117	0	n	ENSMUSG00000025512.16	Chid1	chr7	protein_coding	chitinase domain containing 1
known_NIR_16967	chr7	141112886	141119389	-	141112886	141119686	A5SS	ENSMUST00000153191.8	known	0.01	1	69	1	69	n	0.02	1	60	1	60	n	0.01	1	90	1	90	n	0.00	0	63	0	63	n	0.00	0	98	0	98	n	0.03	2	78	2	78	y	0.00	0	87	0	87	n	0.01	1	86	1	86	n	0.00	0	55	0	55	n	0.00	0	69	0	69	n	0.00	0	58	0	58	n	0.00	0	61	0	61	n	ENSMUSG00000025512.16	Chid1	chr7	protein_coding	chitinase domain containing 1
known_NIR_16968	chr7	141446626;141452520	141452432;141456013	-	141446626	141456013	cassetteExon	ENSMUST00000055819.13	known	0.17	5.0	24	6;4	24	y	0.06	1.0	17	2;0	17	n	0.17	9.5	46	12;7	46	y	0.07	3.5	50	5;2	50	y	0.11	5.0	39	8;2	39	y	0.10	2.0	19	3;1	19	n	0.02	1.0	43	2;0	43	n	0.00	0.0	36	0;0	36	n	0.04	1.0	24	1;1	24	n	0.13	6.0	41	7;5	41	y	0.12	3.0	22	5;1	22	n	0.13	5.5	36	4;7	36	y	ENSMUSG00000025139.15	Tollip	chr7	protein_coding	toll interacting protein
known_NIR_16969	chr7	14147722	14157362	-	14147722;14150237	14150143;14157362	ES	ENSMUST00000168252.9	known	0.02	37	1457.0	37	1596;1318	y	0.01	21	1544.0	21	1732;1356	y	0.00	0	59.5	0	56;63	n	0.02	43	2341.0	43	2459;2223	y	0.01	11	961.0	11	1080;842	y	0.00	0	19.0	0	21;17	n	0.03	32	1222.5	32	1332;1113	y	0.00	0	61.0	0	75;47	n	0.01	23	2483.0	23	2652;2314	y	0.02	58	3421.5	58	3776;3067	y	0.02	34	1911.5	34	2179;1644	y	0.01	19	1561.0	19	1717;1405	y	ENSMUSG00000030378.16	Sult2a8	chr7	protein_coding	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8
known_NIR_16970	chr7	14147722	14157362	-	14150237	14157362	3pMXE	ENSMUST00000125941.3	known	0.03	37	1318	37	1318	y	0.02	21	1356	21	1356	y	0.00	0	63	0	63	n	0.02	43	2223	43	2223	y	0.01	11	842	11	842	y	0.00	0	17	0	17	n	0.03	32	1113	32	1113	y	0.00	0	47	0	47	n	0.01	23	2314	23	2314	y	0.02	58	3067	58	3067	y	0.02	34	1644	34	1644	y	0.01	19	1405	19	1405	y	ENSMUSG00000030378.16	Sult2a8	chr7	protein_coding	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8
known_NIR_16971	chr7	141569909	141570131	-	141569909	141570082	A5SS	ENSMUST00000211000.2	known	0.03	2	62	2	62	y	0.00	0	63	0	63	n	0.00	0	88	0	88	n	0.00	0	82	0	82	n	0.02	2	96	2	96	y	0.03	1	32	1	32	n	0.04	4	89	4	89	y	0.00	0	40	0	40	n	0.00	0	66	0	66	n	0.00	0	93	0	93	n	0.05	4	73	4	73	y	0.01	1	101	1	101	n	ENSMUSG00000025147.8	Mob2	chr7	protein_coding	MOB kinase activator 2
known_NIR_16972	chr7	141570242	141614722	-	141570242	141579567	5pMXE	ENSMUST00000209732.2	known	0.95	18	1	18	1	n	0.92	23	2	23	2	y	1.00	33	0	33	0	n	1.00	31	0	31	0	n	0.95	39	2	39	2	y	1.00	21	0	21	0	n	0.98	42	1	42	1	n	0.96	26	1	26	1	n	1.00	32	0	32	0	n	1.00	36	0	36	0	n	0.97	28	1	28	1	n	1.00	39	0	39	0	n	ENSMUSG00000025147.8	Mob2	chr7	protein_coding	MOB kinase activator 2
known_NIR_16973	chr7	141570242	141614722	-	141570242	141613874	5pMXE	ENSMUST00000211206.2	known	1.00	18	0	18	0	n	0.88	23	3	23	3	y	1.00	33	0	33	0	n	0.94	31	2	31	2	y	0.87	39	6	39	6	y	1.00	21	0	21	0	n	0.91	42	4	42	4	y	0.96	26	1	26	1	n	0.97	32	1	32	1	n	0.95	36	2	36	2	y	0.82	28	6	28	6	y	0.89	39	5	39	5	y	ENSMUSG00000025147.8	Mob2	chr7	protein_coding	MOB kinase activator 2
known_NIR_16974	chr7	141570242;141578213	141578011;141614722	-	141570242	141614722	cassetteExon	ENSMUST00000084418.4	known	0.12	2.5	18	5;0	18	n	0.06	1.5	23	3;0	23	n	0.01	0.5	33	1;0	33	n	0.07	2.5	31	3;2	31	y	0.03	1.0	39	1;1	39	n	0.02	0.5	21	0;1	21	n	0.05	2.0	42	2;2	42	y	0.02	0.5	26	1;0	26	n	0.04	1.5	32	1;2	32	n	0.06	2.5	36	3;2	36	y	0.02	0.5	28	1;0	28	n	0.03	1.0	39	2;0	39	n	ENSMUSG00000025147.8	Mob2	chr7	protein_coding	MOB kinase activator 2
known_NIR_16975	chr7	14161975	14170312	-	14161975	14172381	A5SS	ENSMUST00000168252.9	known	0.01	8	584	8	584	y	0.02	7	400	7	400	y	0.00	0	22	0	22	n	0.02	19	957	19	957	y	0.02	11	579	11	579	y	0.00	0	12	0	12	n	0.03	20	566	20	566	y	0.00	0	53	0	53	n	0.05	27	535	27	535	y	0.03	25	804	25	804	y	0.04	22	517	22	517	y	0.01	6	397	6	397	y	ENSMUSG00000030378.16	Sult2a8	chr7	protein_coding	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8
known_NIR_16976	chr7	14161975	14170312	-	14161975	14180367	A5SS	ENSMUST00000209425.2	known	0.08	8	89	8	89	y	0.09	7	70	7	70	y	0.00	0	5	0	5	n	0.08	19	208	19	208	y	0.30	11	26	11	26	y	0.00	0	1	0	1	n	0.38	20	32	20	32	y	0.00	0	1	0	1	n	0.08	27	309	27	309	y	0.07	25	354	25	354	y	0.11	22	181	22	181	y	0.05	6	127	6	127	y	ENSMUSG00000030378.16	Sult2a8	chr7	protein_coding	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8
known_NIR_16977	chr7	14161975	14170312	-	14161975	14180521	A5SS	ENSMUST00000125941.3	known	0.04	8	203	8	203	y	0.05	7	141	7	141	y	0.00	0	6	0	6	n	0.04	19	461	19	461	y	0.11	11	90	11	90	y	0.00	0	5	0	5	n	0.14	20	119	20	119	y	0.00	0	7	0	7	n	0.04	27	645	27	645	y	0.03	25	809	25	809	y	0.06	22	377	22	377	y	0.02	6	315	6	315	y	ENSMUSG00000030378.16	Sult2a8	chr7	protein_coding	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8
known_NIR_16978	chr7	14161975	14171410	-	14161975	14170312	5pMXE	ENSMUST00000211800.2	known	0.82	36	8	36	8	y	0.79	26	7	26	7	y	1.00	1	0	1	0	n	0.78	68	19	68	19	y	0.66	21	11	21	11	y	1.00	2	0	2	0	n	0.50	20	20	20	20	y	1.00	4	0	4	0	n	0.54	32	27	32	27	y	0.68	53	25	53	25	y	0.68	46	22	46	22	y	0.77	20	6	20	6	y	ENSMUSG00000030378.16	Sult2a8	chr7	protein_coding	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8
known_NIR_16979	chr7	14161975	14171410	-	14161975	14178795	A5SS	ENSMUST00000209972.2	known	0.92	36	3	36	3	y	0.90	26	3	26	3	y	1.00	1	0	1	0	n	0.93	68	5	68	5	y	0.91	21	2	21	2	y	1.00	2	0	2	0	n	1.00	20	0	20	0	n	1.00	4	0	4	0	n	0.73	32	12	32	12	y	0.79	53	14	53	14	y	0.79	46	12	46	12	y	0.95	20	1	20	1	n	ENSMUSG00000030378.16	Sult2a8	chr7	protein_coding	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8
known_NIR_16980	chr7	14161975	14171410	-	14161975	14180367	A5SS	ENSMUST00000209425.2	known	0.29	36	89	36	89	y	0.27	26	70	26	70	y	0.17	1	5	1	5	n	0.25	68	208	68	208	y	0.45	21	26	21	26	y	0.67	2	1	2	1	n	0.38	20	32	20	32	y	0.80	4	1	4	1	n	0.09	32	309	32	309	y	0.13	53	354	53	354	y	0.20	46	181	46	181	y	0.14	20	127	20	127	y	ENSMUSG00000030378.16	Sult2a8	chr7	protein_coding	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8
known_NIR_16981	chr7	14161975	14171410	-	14161975	14180521	A5SS	ENSMUST00000125941.3	known	0.15	36	203	36	203	y	0.16	26	141	26	141	y	0.14	1	6	1	6	n	0.13	68	461	68	461	y	0.19	21	90	21	90	y	0.29	2	5	2	5	n	0.14	20	119	20	119	y	0.36	4	7	4	7	y	0.05	32	645	32	645	y	0.06	53	809	53	809	y	0.11	46	377	46	377	y	0.06	20	315	20	315	y	ENSMUSG00000030378.16	Sult2a8	chr7	protein_coding	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8
known_NIR_16982	chr7	14161975	14178795	-	14161975	14170312	5pMXE	ENSMUST00000211800.2	known	0.27	3	8	3	8	y	0.30	3	7	3	7	y	-	-	-	-	-	-	0.21	5	19	5	19	y	0.15	2	11	2	11	y	-	-	-	-	-	-	0.00	0	20	0	20	n	-	-	-	-	-	-	0.31	12	27	12	27	y	0.36	14	25	14	25	y	0.35	12	22	12	22	y	0.14	1	6	1	6	n	ENSMUSG00000030378.16	Sult2a8	chr7	protein_coding	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8
known_NIR_16983	chr7	14161975	14178795	-	14161975	14172381	5pMXE	ENSMUST00000168252.9	known	0.01	3	584	3	584	y	0.01	3	400	3	400	y	0.00	0	22	0	22	n	0.01	5	957	5	957	y	0.00	2	579	2	579	y	0.00	0	12	0	12	n	0.00	0	566	0	566	n	0.00	0	53	0	53	n	0.02	12	535	12	535	y	0.02	14	804	14	804	y	0.02	12	517	12	517	y	0.00	1	397	1	397	n	ENSMUSG00000030378.16	Sult2a8	chr7	protein_coding	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8
known_NIR_16984	chr7	14161975	14178795	-	14161975	14180367	A5SS	ENSMUST00000209425.2	known	0.03	3	89	3	89	y	0.04	3	70	3	70	y	0.00	0	5	0	5	n	0.02	5	208	5	208	y	0.07	2	26	2	26	y	0.00	0	1	0	1	n	0.00	0	32	0	32	n	0.00	0	1	0	1	n	0.04	12	309	12	309	y	0.04	14	354	14	354	y	0.06	12	181	12	181	y	0.01	1	127	1	127	n	ENSMUSG00000030378.16	Sult2a8	chr7	protein_coding	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8
known_NIR_16985	chr7	14161975	14178795	-	14161975	14180521	A5SS	ENSMUST00000125941.3	known	0.01	3	203	3	203	y	0.02	3	141	3	141	y	0.00	0	6	0	6	n	0.01	5	461	5	461	y	0.02	2	90	2	90	y	0.00	0	5	0	5	n	0.00	0	119	0	119	n	0.00	0	7	0	7	n	0.02	12	645	12	645	y	0.02	14	809	14	809	y	0.03	12	377	12	377	y	0.00	1	315	1	315	n	ENSMUSG00000030378.16	Sult2a8	chr7	protein_coding	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8
known_NIR_16986	chr7	14161975	14180367	-	14161975	14172381	5pMXE	ENSMUST00000168252.9	known	0.13	89	584	89	584	y	0.15	70	400	70	400	y	0.19	5	22	5	22	y	0.18	208	957	208	957	y	0.04	26	579	26	579	y	0.08	1	12	1	12	n	0.05	32	566	32	566	y	0.02	1	53	1	53	n	0.37	309	535	309	535	y	0.31	354	804	354	804	y	0.26	181	517	181	517	y	0.24	127	397	127	397	y	ENSMUSG00000030378.16	Sult2a8	chr7	protein_coding	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8
known_NIR_16987	chr7	14161975	14180521	-	14161975	14172381	5pMXE	ENSMUST00000168252.9	known	0.26	203	584	203	584	y	0.26	141	400	141	400	y	0.21	6	22	6	22	y	0.33	461	957	461	957	y	0.13	90	579	90	579	y	0.29	5	12	5	12	y	0.17	119	566	119	566	y	0.12	7	53	7	53	y	0.55	645	535	645	535	y	0.50	809	804	809	804	y	0.42	377	517	377	517	y	0.44	315	397	315	397	y	ENSMUSG00000030378.16	Sult2a8	chr7	protein_coding	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8
known_NIR_16988	chr7	14161975	14180521	-	14161975	14180367	5pMXE	ENSMUST00000209425.2	known	0.70	203	89	203	89	y	0.67	141	70	141	70	y	0.55	6	5	6	5	y	0.69	461	208	461	208	y	0.78	90	26	90	26	y	0.83	5	1	5	1	n	0.79	119	32	119	32	y	0.88	7	1	7	1	n	0.68	645	309	645	309	y	0.70	809	354	809	354	y	0.68	377	181	377	181	y	0.71	315	127	315	127	y	ENSMUSG00000030378.16	Sult2a8	chr7	protein_coding	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8
known_NIR_16989	chr7	14161975;14171439	14171410;14172381	-	14161975	14172381	cassetteExon	ENSMUST00000168252.9	known	0.06	34.0	584	36;32	584	y	0.05	23.0	400	26;20	400	y	0.02	0.5	22	1;0	22	n	0.06	63.0	957	68;58	957	y	0.04	22.5	579	21;24	579	y	0.08	1.0	12	2;0	12	n	0.03	20.5	566	20;21	566	y	0.05	3.0	53	4;2	53	y	0.05	30.0	535	32;28	535	y	0.05	45.5	804	53;38	804	y	0.07	40.5	517	46;35	517	y	0.04	18.5	397	20;17	397	y	ENSMUSG00000030378.16	Sult2a8	chr7	protein_coding	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8
known_NIR_16990	chr7	141930907	141931088	-	141930907	141931070	A5SS	ENSMUST00000209263.2	known	0.00	2	1004	2	1004	y	0.00	3	931	3	931	y	0.00	0	1205	0	1205	n	0.00	0	1131	0	1131	n	0.00	0	1292	0	1292	n	0.00	0	600	0	600	n	0.00	0	1506	0	1506	n	0.00	0	656	0	656	n	0.00	0	1036	0	1036	n	0.00	0	1388	0	1388	n	0.00	0	1054	0	1054	n	0.00	0	1242	0	1242	n	ENSMUSG00000110040.2	Gm49369	chr7	protein_coding	predicted gene, 49369
known_NIR_16991	chr7	141995630	141996206	+	141995605	141996206	A5SS	ENSMUST00000105971.8	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.01	9	1031	9	1031	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031097.16	Tnni2	chr7	protein_coding	troponin I, skeletal, fast 2
known_NIR_16992	chr7	141997168	141997269	+	141997168	141997308	A3SS	ENSMUST00000105971.8	known	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	4	2318	4	2318	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000031097.16	Tnni2	chr7	protein_coding	troponin I, skeletal, fast 2
known_NIR_16993	chr7	142042252	142042603	+	142042252	142042585	A3SS	ENSMUST00000105968.8	known	0.25	2	6	2	6	n	1.00	3	0	3	0	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.50	3	3	3	3	n	0.50	2	2	2	2	n	0.31	5	11	5	11	y	-	-	-	-	-	-	0.29	2	5	2	5	n	0.17	1	5	1	5	n	0.43	3	4	3	4	n	0.00	0	5	0	5	n	ENSMUSG00000018819.11	Lsp1	chr7	protein_coding	lymphocyte specific 1
known_NIR_16994	chr7	142055579	142057785	+	142055579;142056494	142056477;142057785	ES	ENSMUST00000078497.15	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2.0	0	2;2	n	0.20	382	1525.0	382	1582;1468	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061723.19	Tnnt3	chr7	protein_coding	troponin T3, skeletal, fast
known_NIR_16995	chr7	142055579;142056494	142056477;142062072	+	142055579;142059036	142057785;142062072	MXE	ENSMUST00000074187.13	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1.0	0.0	2;0	0;0	n	0.60	793.5	525.5	1582;5	382;669	y	-	-	-	-	-	-	0.00	0.0	0.5	0;0	0;1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061723.19	Tnnt3	chr7	protein_coding	troponin T3, skeletal, fast
known_NIR_16996	chr7	142055579;142056494	142056477;142062072	+	142055579;142059267	142057785;142062072	MXE	ENSMUST00000105949.8	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	1.0	0.5	2;0	0;1	n	0.47	793.5	907.0	1582;5	382;1432	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061723.19	Tnnt3	chr7	protein_coding	troponin T3, skeletal, fast
known_NIR_16997	chr7	142055579;142056494	142056477;142062072	+	142055579;142061525	142057785;142062072	MXE	ENSMUST00000105953.10	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1.0	0.0	2;0	0;0	n	0.76	793.5	248.5	1582;5	382;115	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061723.19	Tnnt3	chr7	protein_coding	troponin T3, skeletal, fast
known_NIR_16998	chr7	142055579;142057802	142057785;142062072	+	142055579;142056494	142056477;142062072	MXE	ENSMUST00000146804.8	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0.0	1.0	0;0	2;0	n	0.20	196.0	793.5	382;10	1582;5	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061723.19	Tnnt3	chr7	protein_coding	troponin T3, skeletal, fast
known_NIR_16999	chr7	142056494	142062072	+	142056494;142057802	142057785;142062072	ES	ENSMUST00000128294.8	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1.0	0	2;0	n	0.01	5	739.0	5	1468;10	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061723.19	Tnnt3	chr7	protein_coding	troponin T3, skeletal, fast
known_NIR_17000	chr7	142057802	142057987	+	142057802	142062072	A3SS	ENSMUST00000128294.8	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	n	0.99	1774	10	1774	10	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061723.19	Tnnt3	chr7	protein_coding	troponin T3, skeletal, fast
known_NIR_17001	chr7	142057802	142059253	+	142057802	142057987	A3SS&ES	ENSMUST00000105957.10	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.06	116	1774	116	1774	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061723.19	Tnnt3	chr7	protein_coding	troponin T3, skeletal, fast
known_NIR_17002	chr7	142057802	142059253	+	142057802;142058001	142057987;142059253	ES	ENSMUST00000078497.15	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1.0	0	2;0	n	0.09	116	1120.0	116	1774;466	y	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061723.19	Tnnt3	chr7	protein_coding	troponin T3, skeletal, fast
known_NIR_17003	chr7	142057802	142062072	+	142057802;142059267	142059253;142062072	ES	ENSMUST00000105949.8	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	0.5	0	0;1	n	0.01	10	774.0	10	116;1432	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061723.19	Tnnt3	chr7	protein_coding	troponin T3, skeletal, fast
known_NIR_17004	chr7	142057802;142059267	142059253;142062072	+	142057802;142059036	142057987;142062072	MXE	ENSMUST00000074187.13	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	0.5	1.0	0;1	2;0	n	0.39	774.0	1221.5	116;1432	1774;669	y	-	-	-	-	-	-	0.00	0.0	1.0	0;0	1;1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061723.19	Tnnt3	chr7	protein_coding	troponin T3, skeletal, fast
known_NIR_17005	chr7	142058001	142059253	+	142058001	142059025	3pMXE	ENSMUST00000209807.2	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.25	466	1393	466	1393	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061723.19	Tnnt3	chr7	protein_coding	troponin T3, skeletal, fast
known_NIR_17006	chr7	142058001;142059036	142059025;142059253	+	142058001	142059253	cassetteExon	ENSMUST00000078497.15	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1.5	0	2;1	0	n	0.71	1122.0	466	1393;851	466	y	-	-	-	-	-	-	1.00	0.5	0	1;0	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061723.19	Tnnt3	chr7	protein_coding	troponin T3, skeletal, fast
known_NIR_17007	chr7	142058001;142059036	142059025;142062072	+	142058001;142059267	142059253;142062072	MXE	ENSMUST00000105955.8	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	1.0	0.5	2;0	0;1	n	0.52	1031.0	949.0	1393;669	466;1432	y	-	-	-	-	-	-	1.00	1.0	0.0	1;1	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061723.19	Tnnt3	chr7	protein_coding	troponin T3, skeletal, fast
known_NIR_17008	chr7	142058001;142059036	142059025;142062072	+	142058001;142061525	142059253;142062072	MXE	ENSMUST00000078497.15	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1.0	0.0	2;0	0;0	n	0.78	1031.0	290.5	1393;669	466;115	y	-	-	-	-	-	-	1.00	1.0	0.0	1;1	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061723.19	Tnnt3	chr7	protein_coding	troponin T3, skeletal, fast
known_NIR_17009	chr7	142059036	142059253	+	142057802	142059253	A5SS	ENSMUST00000125649.8	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.88	851	116	851	116	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061723.19	Tnnt3	chr7	protein_coding	troponin T3, skeletal, fast
known_NIR_17010	chr7	142059036	142062072	+	142056494	142062072	A5SS	ENSMUST00000146804.8	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.99	669	5	669	5	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061723.19	Tnnt3	chr7	protein_coding	troponin T3, skeletal, fast
known_NIR_17011	chr7	142059036	142062072	+	142057802	142062072	A5SS	ENSMUST00000128294.8	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.99	669	10	669	10	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061723.19	Tnnt3	chr7	protein_coding	troponin T3, skeletal, fast
known_NIR_17012	chr7	142059036	142062072	+	142059036;142059267	142059253;142062072	ES	ENSMUST00000105952.10	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1.0	0	1;1	n	0.37	669	1141.5	669	851;1432	y	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061723.19	Tnnt3	chr7	protein_coding	troponin T3, skeletal, fast
known_NIR_17013	chr7	142059036	142062072	+	142059267	142062072	A5SS&ES	ENSMUST00000105949.8	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.32	669	1432	669	1432	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061723.19	Tnnt3	chr7	protein_coding	troponin T3, skeletal, fast
known_NIR_17014	chr7	142059036	142062072	+	142061525	142062072	A5SS&ES	ENSMUST00000125649.8	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.85	669	115	669	115	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061723.19	Tnnt3	chr7	protein_coding	troponin T3, skeletal, fast
known_NIR_17015	chr7	142059267	142062072	+	142056494	142062072	A5SS	ENSMUST00000146804.8	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1432	5	1432	5	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061723.19	Tnnt3	chr7	protein_coding	troponin T3, skeletal, fast
known_NIR_17016	chr7	142059267	142062072	+	142059267;142061525	142061487;142062072	ES	ENSMUST00000078497.15	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	0.94	1432	96.0	1432	77;115	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061723.19	Tnnt3	chr7	protein_coding	troponin T3, skeletal, fast
known_NIR_17017	chr7	142061525	142062072	+	142056494	142062072	A5SS	ENSMUST00000146804.8	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.96	115	5	115	5	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061723.19	Tnnt3	chr7	protein_coding	troponin T3, skeletal, fast
known_NIR_17018	chr7	142061525	142062072	+	142057802	142062072	A5SS	ENSMUST00000128294.8	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.92	115	10	115	10	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061723.19	Tnnt3	chr7	protein_coding	troponin T3, skeletal, fast
known_NIR_17019	chr7	142066359;142067442	142067402;142069513	+	142066359;142068103	142068063;142069513	MXE	ENSMUST00000078497.15	known	1.00	0.5	0.0	1;0	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0.0	0.5	0;0	1;0	n	-	-	-	-	-	-	0.00	0.0	1.5	0;0	2;1	n	0.02	56.5	2230.5	64;49	2303;2158	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061723.19	Tnnt3	chr7	protein_coding	troponin T3, skeletal, fast
known_NIR_17020	chr7	142067442	142069513	+	142068103	142069513	5pMXE	ENSMUST00000144259.2	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.02	49	2158	49	2158	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061723.19	Tnnt3	chr7	protein_coding	troponin T3, skeletal, fast
known_NIR_17021	chr7	142086978	142088742	+	142086931	142088742	A5SS	ENSMUST00000038675.7	known	0.00	0	90	0	90	n	0.00	0	105	0	105	n	0.00	0	91	0	91	n	0.03	3	110	3	110	y	0.00	0	117	0	117	n	0.00	0	58	0	58	n	0.00	0	112	0	112	n	0.00	0	53	0	53	n	0.00	0	68	0	68	n	0.00	0	111	0	111	n	0.00	0	99	0	99	n	0.00	0	119	0	119	n	ENSMUSG00000037772.14	Mrpl23	chr7	protein_coding	mitochondrial ribosomal protein L23
known_NIR_17022	chr7	142130480	142130566	-	142130484	142130566	A3SS	ENSMUST00000136359.8	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.06	19	292	19	292	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000000031.17	H19	chr7	lncRNA	H19, imprinted maternally expressed transcript
known_NIR_17023	chr7	142607083	142616230	+	142606803	142616230	A5SS	ENSMUST00000037941.10	known	0.00	0	564	0	564	n	0.00	0	485	0	485	n	0.00	0	413	0	413	n	0.00	0	622	0	622	n	0.00	0	751	0	751	n	0.00	0	275	0	275	n	0.00	0	753	0	753	n	0.00	0	358	0	358	n	0.00	0	524	0	524	n	0.00	2	733	2	733	y	0.00	0	565	0	565	n	0.00	0	547	0	547	n	ENSMUSG00000037706.18	Cd81	chr7	protein_coding	CD81 antigen
known_NIR_17024	chr7	142623557	142623673	+	142623587	142623673	A5SS	ENSMUST00000060433.10	known	0.33	15	31	15	31	y	0.44	31	40	31	40	y	0.42	39	53	39	53	y	0.55	21	17	21	17	y	0.55	38	31	38	31	y	0.45	33	40	33	40	y	0.53	28	25	28	25	y	0.49	31	32	31	32	y	0.34	10	19	10	19	y	0.47	18	20	18	20	y	0.65	26	14	26	14	y	0.39	13	20	13	20	y	ENSMUSG00000045752.14	Tssc4	chr7	protein_coding	tumor-suppressing subchromosomal transferable fragment 4
known_NIR_17025	chr7	143028975	143029807	+	143027574	143029807	A5SS	ENSMUST00000052348.12	known	0.26	35	99	35	99	y	0.25	26	80	26	80	y	0.06	2	30	2	30	y	0.30	59	138	59	138	y	0.26	49	139	49	139	y	0.05	1	21	1	21	n	0.31	47	106	47	106	y	0.07	3	38	3	38	y	0.32	54	114	54	114	y	0.31	56	127	56	127	y	0.35	61	113	61	113	y	0.31	57	129	57	129	y	ENSMUSG00000000154.17	Slc22a18	chr7	protein_coding	solute carrier family 22 (organic cation transporter), member 18
known_NIR_17026	chr7	143030042	143033022	+	143030042	143034127	A3SS	ENSMUST00000150791.8	known	0.97	332	11	332	11	y	0.98	205	5	205	5	y	1.00	73	0	73	0	n	0.97	368	10	368	10	y	0.96	322	14	322	14	y	1.00	66	0	66	0	n	0.99	293	4	293	4	y	0.99	102	1	102	1	n	0.96	263	10	263	10	y	0.97	371	10	371	10	y	0.99	289	3	289	3	y	0.98	425	7	425	7	y	ENSMUSG00000000154.17	Slc22a18	chr7	protein_coding	solute carrier family 22 (organic cation transporter), member 18
known_NIR_17027	chr7	143030042	143033457	+	143030042;143033119	143033022;143033457	ES	ENSMUST00000052348.12	known	0.01	4	319.5	4	332;307	y	0.01	2	218.0	2	205;231	y	0.00	0	71.0	0	73;69	n	0.00	0	380.5	0	368;393	n	0.01	2	321.0	2	322;320	y	0.01	1	77.5	1	66;89	n	0.01	2	294.5	2	293;296	y	0.01	1	98.0	1	102;94	n	0.02	5	295.5	5	263;328	y	0.02	8	371.5	8	371;372	y	0.02	6	297.0	6	289;305	y	0.01	4	427.5	4	425;430	y	ENSMUSG00000000154.17	Slc22a18	chr7	protein_coding	solute carrier family 22 (organic cation transporter), member 18
known_NIR_17028	chr7	143030042;143033617	143033457;143034127	+	143030042	143034127	cassetteExon	ENSMUST00000150791.8	known	0.92	122.0	11	4;240	11	y	0.96	111.5	5	2;221	5	y	1.00	30.0	0	0;60	0	n	0.94	154.0	10	0;308	10	n	0.90	131.5	14	2;261	14	y	1.00	29.0	0	1;57	0	n	0.97	146.0	4	2;290	4	y	0.98	46.5	1	1;92	1	n	0.93	126.0	10	5;247	10	y	0.95	172.5	10	8;337	10	y	0.98	128.0	3	6;250	3	y	0.97	199.5	7	4;395	7	y	ENSMUSG00000000154.17	Slc22a18	chr7	protein_coding	solute carrier family 22 (organic cation transporter), member 18
known_NIR_17029	chr7	143045590	143046543	+	143045590	143046579	A3SS	ENSMUST00000052348.12	known	0.09	38	377	38	377	y	0.03	13	384	13	384	y	0.03	2	73	2	73	y	0.05	20	382	20	382	y	0.07	27	346	27	346	y	0.05	4	75	4	75	y	0.06	23	372	23	372	y	0.04	4	105	4	105	y	0.05	14	283	14	283	y	0.07	33	451	33	451	y	0.05	21	375	21	375	y	0.05	24	456	24	456	y	ENSMUSG00000000154.17	Slc22a18	chr7	protein_coding	solute carrier family 22 (organic cation transporter), member 18
known_NIR_17030	chr7	143068374	143074121	-	143068374;143072622	143072587;143074121	ES	ENSMUST00000072727.7	known	0.85	75	13.5	75	14;13	y	0.78	74	21.0	74	19;23	y	0.81	102	23.5	102	24;23	y	0.86	69	11.0	69	11;11	y	0.80	133	32.5	133	30;35	y	0.72	63	24.5	63	23;26	y	0.76	103	32.0	103	30;34	y	0.76	58	18.0	58	17;19	y	0.84	60	11.5	60	12;11	y	0.88	99	14.0	99	12;16	y	0.86	70	11.0	70	7;15	y	0.79	97	25.5	97	24;27	y	ENSMUSG00000059119.10	Nap1l4	chr7	protein_coding	nucleosome assembly protein 1-like 4
known_NIR_17031	chr7	143086117	143089388	-	143086117;143088154	143088023;143089388	ES	ENSMUST00000072727.7	known	0.01	1	97.5	1	120;75	n	0.00	0	76.0	0	92;60	n	0.05	6	118.5	6	128;109	y	0.01	1	91.5	1	103;80	n	0.01	2	141.0	2	160;122	y	0.06	4	68.0	4	78;58	y	0.01	2	136.0	2	159;113	y	0.00	0	64.0	0	75;53	n	0.00	0	70.5	0	84;57	n	0.00	0	119.0	0	126;112	n	0.01	1	72.5	1	69;76	n	0.03	3	90.5	3	107;74	y	ENSMUSG00000059119.10	Nap1l4	chr7	protein_coding	nucleosome assembly protein 1-like 4
known_NIR_17032	chr7	143095515	143099866	-	143095515	143102474	A5SS	ENSMUST00000209098.2	known	0.00	0	4	0	4	n	-	-	-	-	-	-	0.30	3	7	3	7	y	0.50	2	2	2	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	1.00	4	0	4	0	n	0.00	0	5	0	5	n	0.33	1	2	1	2	n	-	-	-	-	-	-	ENSMUSG00000059119.10	Nap1l4	chr7	protein_coding	nucleosome assembly protein 1-like 4
known_NIR_17033	chr7	143095515	143099866	-	143095515	143102779	A5SS	ENSMUST00000072727.7	known	0.00	0	25	0	25	n	0.00	0	16	0	16	n	0.07	3	39	3	39	y	0.06	2	29	2	29	y	0.00	0	41	0	41	n	0.05	1	21	1	21	n	0.00	0	32	0	32	n	0.06	1	16	1	16	n	0.13	4	26	4	26	y	0.00	0	26	0	26	n	0.03	1	29	1	29	n	0.00	0	26	0	26	n	ENSMUSG00000059119.10	Nap1l4	chr7	protein_coding	nucleosome assembly protein 1-like 4
known_NIR_17034	chr7	143095515	143102474	-	143095515	143102779	A5SS	ENSMUST00000072727.7	known	0.14	4	25	4	25	y	0.00	0	16	0	16	n	0.15	7	39	7	39	y	0.06	2	29	2	29	y	0.00	0	41	0	41	n	0.00	0	21	0	21	n	0.11	4	32	4	32	y	0.16	3	16	3	16	y	0.00	0	26	0	26	n	0.16	5	26	5	26	y	0.06	2	29	2	29	y	0.00	0	26	0	26	n	ENSMUSG00000059119.10	Nap1l4	chr7	protein_coding	nucleosome assembly protein 1-like 4
known_NIR_17035	chr7	143113445	143116698	-	143113445;143115663	143115596;143116698	ES	ENSMUST00000010899.14	known	0.07	6	74.5	6	57;92	y	0.05	6	104.5	6	97;112	y	0.05	8	148.0	8	135;161	y	0.02	2	82.5	2	73;92	y	0.04	5	109.0	5	94;124	y	0.00	0	44.0	0	40;48	n	0.02	2	92.0	2	86;98	y	0.08	4	49.0	4	48;50	y	0.03	2	62.5	2	60;65	y	0.11	10	78.5	10	74;83	y	0.08	7	85.0	7	86;84	y	0.04	4	87.5	4	83;92	y	ENSMUSG00000010755.18	Cars	chr7	protein_coding	cysteinyl-tRNA synthetase
known_NIR_17036	chr7	143113445	143116698	-	143115663	143116698	3pMXE	ENSMUST00000135032.2	known	0.06	6	92	6	92	y	0.05	6	112	6	112	y	0.05	8	161	8	161	y	0.02	2	92	2	92	y	0.04	5	124	5	124	y	0.00	0	48	0	48	n	0.02	2	98	2	98	y	0.07	4	50	4	50	y	0.03	2	65	2	65	y	0.11	10	83	10	83	y	0.08	7	84	7	84	y	0.04	4	92	4	92	y	ENSMUSG00000010755.18	Cars	chr7	protein_coding	cysteinyl-tRNA synthetase
known_NIR_17037	chr7	143142320	143153719	-	143142320;143146397	143146149;143153719	ES	ENSMUST00000010899.14	known	0.88	14	2.0	14	2;2	y	0.81	11	2.5	11	2;3	y	0.78	40	11.5	40	16;7	y	0.79	27	7.0	27	6;8	y	0.75	25	8.5	25	12;5	y	1.00	7	0.0	7	0;0	n	0.90	35	4.0	35	3;5	y	0.93	20	1.5	20	1;2	n	0.86	9	1.5	9	1;2	n	0.65	16	8.5	16	12;5	y	0.71	10	4.0	10	5;3	y	0.83	25	5.0	25	6;4	y	ENSMUSG00000010755.18	Cars	chr7	protein_coding	cysteinyl-tRNA synthetase
known_NIR_17038	chr7	143365037	143366500	-	143365037;143366344	143366227;143366500	ES	ENSMUST00000033415.15	known	0.29	10	25.0	10	26;24	y	0.35	9	16.5	9	19;14	y	0.28	9	23.5	9	26;21	y	0.23	9	30.5	9	32;29	y	0.17	8	40.0	8	47;33	y	0.23	6	20.5	6	26;15	y	0.16	6	31.5	6	32;31	y	0.04	1	22.0	1	21;23	n	0.23	8	26.5	8	28;25	y	0.08	3	36.5	3	39;34	y	0.07	2	28.0	2	26;30	y	0.15	5	29.0	5	25;33	y	ENSMUSG00000031090.15	Nadsyn1	chr7	protein_coding	NAD synthetase 1
known_NIR_17039	chr7	143369459	143369911	-	143369412	143369911	A3SS	ENSMUST00000033415.15	known	0.03	1	37	1	37	n	0.05	1	20	1	20	n	0.00	0	35	0	35	n	0.00	0	40	0	40	n	0.00	0	42	0	42	n	0.00	0	20	0	20	n	0.03	1	38	1	38	n	0.06	1	15	1	15	n	0.11	3	25	3	25	y	0.09	3	32	3	32	y	0.00	0	30	0	30	n	0.08	5	56	5	56	y	ENSMUSG00000031090.15	Nadsyn1	chr7	protein_coding	NAD synthetase 1
known_NIR_17040	chr7	143372946	143376396	-	143372946;143374969	143374909;143376396	ES	ENSMUST00000033415.15	known	0.06	1	17.0	1	22;12	n	0.22	4	14.0	4	12;16	y	0.09	3	31.5	3	35;28	y	0.17	5	24.0	5	24;24	y	0.18	7	31.0	7	32;30	y	0.17	3	14.5	3	17;12	y	0.12	3	21.0	3	25;17	y	0.13	3	19.5	3	24;15	y	0.00	0	28.5	0	29;28	n	0.19	6	26.0	6	33;19	y	0.20	7	28.0	7	27;29	y	0.19	8	35.0	8	39;31	y	ENSMUSG00000031090.15	Nadsyn1	chr7	protein_coding	NAD synthetase 1
known_NIR_17041	chr7	143384002	143390375	+	143384002	143387546	A3SS&ES	ENSMUST00000141916.8	known	1.00	36	0	36	0	n	1.00	17	0	17	0	n	1.00	73	0	73	0	n	1.00	52	0	52	0	n	1.00	105	0	105	0	n	0.97	71	2	71	2	y	1.00	61	0	61	0	n	1.00	67	0	67	0	n	0.96	51	2	51	2	y	1.00	59	0	59	0	n	1.00	62	0	62	0	n	1.00	68	0	68	0	n	ENSMUSG00000058454.16	Dhcr7	chr7	protein_coding	7-dehydrocholesterol reductase
known_NIR_17042	chr7	143384002;143387673	143387505;143390375	+	143384002	143390375	cassetteExon	ENSMUST00000128454.8	known	0.09	3.5	36	2;5	36	y	0.13	2.5	17	1;4	17	n	0.08	6.0	73	2;10	73	y	0.04	2.0	52	1;3	52	n	0.04	4.5	105	3;6	105	y	0.10	8.0	71	7;9	71	y	0.08	5.0	61	0;10	61	n	0.12	9.0	67	4;14	67	y	0.10	5.5	51	3;8	51	y	0.06	4.0	59	0;8	59	n	0.04	2.5	62	2;3	62	y	0.02	1.5	68	1;2	68	n	ENSMUSG00000058454.16	Dhcr7	chr7	protein_coding	7-dehydrocholesterol reductase
known_NIR_17043	chr7	143384002;143387673	143387546;143390375	+	143384002	143390375	cassetteExon	ENSMUST00000128454.8	known	0.06	2.5	36	0;5	36	n	0.11	2.0	17	0;4	17	n	0.06	5.0	73	0;10	73	n	0.03	1.5	52	0;3	52	n	0.03	3.0	105	0;6	105	n	0.07	5.5	71	2;9	71	y	0.08	5.0	61	0;10	61	n	0.09	7.0	67	0;14	67	n	0.09	5.0	51	2;8	51	y	0.06	4.0	59	0;8	59	n	0.02	1.5	62	0;3	62	n	0.01	1.0	68	0;2	68	n	ENSMUSG00000058454.16	Dhcr7	chr7	protein_coding	7-dehydrocholesterol reductase
known_NIR_17044	chr7	143384136	143390375	+	143384002	143390375	A5SS	ENSMUST00000128454.8	known	0.05	2	36	2	36	y	0.29	7	17	7	17	y	0.05	4	73	4	73	y	0.10	6	52	6	52	y	0.12	15	105	15	105	y	0.07	5	71	5	71	y	0.14	10	61	10	61	y	0.07	5	67	5	67	y	0.09	5	51	5	51	y	0.11	7	59	7	59	y	0.02	1	62	1	62	n	0.03	2	68	2	68	y	ENSMUSG00000058454.16	Dhcr7	chr7	protein_coding	7-dehydrocholesterol reductase
known_NIR_17045	chr7	143384136	143390375	+	143386657	143390375	A5SS&ES	ENSMUST00000207143.2	known	1.00	2	0	2	0	n	0.70	7	3	7	3	y	0.67	4	2	4	2	n	0.60	6	4	6	4	y	0.62	15	9	15	9	y	0.36	5	9	5	9	y	0.71	10	4	10	4	y	0.62	5	3	5	3	n	0.83	5	1	5	1	n	0.64	7	4	7	4	y	0.25	1	3	1	3	n	0.67	2	1	2	1	n	ENSMUSG00000058454.16	Dhcr7	chr7	protein_coding	7-dehydrocholesterol reductase
known_NIR_17046	chr7	143384136	143390375	+	143387673	143390375	A5SS&ES	ENSMUST00000143338.2	known	0.29	2	5	2	5	n	0.64	7	4	7	4	y	0.29	4	10	4	10	y	0.67	6	3	6	3	n	0.71	15	6	15	6	y	0.36	5	9	5	9	y	0.50	10	10	10	10	y	0.26	5	14	5	14	y	0.38	5	8	5	8	y	0.47	7	8	7	8	y	0.25	1	3	1	3	n	0.50	2	2	2	2	n	ENSMUSG00000058454.16	Dhcr7	chr7	protein_coding	7-dehydrocholesterol reductase
known_NIR_17047	chr7	143391721	143395077	+	143391721	143394170	A3SS&ES	ENSMUST00000073878.12	known	0.01	1	136	1	136	n	0.00	0	74	0	74	n	0.01	3	267	3	267	y	0.00	0	203	0	203	n	0.00	0	355	0	355	n	0.01	2	310	2	310	y	0.00	0	271	0	271	n	0.00	1	262	1	262	n	0.00	0	167	0	167	n	0.00	0	284	0	284	n	0.01	1	193	1	193	n	0.02	5	220	5	220	y	ENSMUSG00000058454.16	Dhcr7	chr7	protein_coding	7-dehydrocholesterol reductase
known_NIR_17048	chr7	143395108	143396862	+	143395108	143396851	A3SS	ENSMUST00000073878.12	known	0.00	0	173	0	173	n	0.00	0	106	0	106	n	0.01	3	294	3	294	y	0.00	0	206	0	206	n	0.00	0	408	0	408	n	0.00	0	283	0	283	n	0.00	0	302	0	302	n	0.00	0	305	0	305	n	0.02	4	187	4	187	y	0.00	0	284	0	284	n	0.00	0	233	0	233	n	0.00	0	266	0	266	n	ENSMUSG00000058454.16	Dhcr7	chr7	protein_coding	7-dehydrocholesterol reductase
known_NIR_17049	chr7	144003352;144003758	144003674;144005764	-	144003352	144005764	cassetteExon	ENSMUST00000033407.13	known	0.01	0.5	34	0;1	34	n	0.00	0.0	40	0;0	40	n	0.04	2.0	47	2;2	47	y	0.00	0.0	61	0;0	61	n	0.01	0.5	50	0;1	50	n	0.00	0.0	30	0;0	30	n	0.00	0.0	45	0;0	45	n	0.02	0.5	25	0;1	25	n	0.00	0.0	38	0;0	38	n	0.03	2.0	69	0;4	69	n	0.02	1.0	46	2;0	46	n	0.01	1.0	66	0;2	66	n	ENSMUSG00000031078.16	Cttn	chr7	protein_coding	cortactin
known_NIR_17050	chr7	144003352;144003758	144003674;144005764	-	144003352;144004825	144004715;144005764	MXE	ENSMUST00000103079.4	known	0.02	0.5	20.5	0;1	17;24	n	0.00	0.0	21.0	0;0	28;14	n	0.03	2.0	70.5	2;2	65;76	y	0.00	0.0	26.5	0;0	32;21	n	0.01	0.5	44.0	0;1	48;40	n	0.00	0.0	24.0	0;0	24;24	n	0.00	0.0	33.0	0;0	28;38	n	0.02	0.5	20.5	0;1	20;21	n	0.00	0.0	18.0	0;0	18;18	n	0.07	2.0	27.0	0;4	33;21	n	0.08	1.0	11.0	2;0	13;9	n	0.06	1.0	17.0	0;2	19;15	n	ENSMUSG00000031078.16	Cttn	chr7	protein_coding	cortactin
known_NIR_17051	chr7	144003352;144004825	144004715;144005764	-	144003352	144005764	cassetteExon	ENSMUST00000033407.13	known	0.38	20.5	34	17;24	34	y	0.34	21.0	40	28;14	40	y	0.60	70.5	47	65;76	47	y	0.30	26.5	61	32;21	61	y	0.47	44.0	50	48;40	50	y	0.44	24.0	30	24;24	30	y	0.42	33.0	45	28;38	45	y	0.45	20.5	25	20;21	25	y	0.32	18.0	38	18;18	38	y	0.28	27.0	69	33;21	69	y	0.19	11.0	46	13;9	46	y	0.20	17.0	66	19;15	66	y	ENSMUSG00000031078.16	Cttn	chr7	protein_coding	cortactin
known_NIR_17052	chr7	144031726	144034822	-	144031726	144032764	5pMXE	ENSMUST00000207298.2	known	0.00	0	38	0	38	n	0.00	0	42	0	42	n	0.00	0	53	0	53	n	0.00	0	45	0	45	n	0.00	0	53	0	53	n	0.00	0	32	0	32	n	0.10	5	43	5	43	y	0.00	0	40	0	40	n	0.00	0	29	0	29	n	0.00	0	45	0	45	n	0.00	0	42	0	42	n	0.03	2	56	2	56	y	ENSMUSG00000037519.18	Ppfia1	chr7	protein_coding	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1
known_NIR_17053	chr7	144031726	144034822	-	144031726;144032834	144032764;144034822	ES	ENSMUST00000168134.10	known	0.00	0	36.0	0	38;34	n	0.00	0	37.5	0	42;33	n	0.00	0	43.0	0	53;33	n	0.00	0	34.0	0	45;23	n	0.00	0	44.0	0	53;35	n	0.00	0	29.0	0	32;26	n	0.12	5	37.5	5	43;32	y	0.00	0	30.5	0	40;21	n	0.00	0	22.5	0	29;16	n	0.00	0	43.0	0	45;41	n	0.00	0	37.0	0	42;32	n	0.04	2	50.0	2	56;44	y	ENSMUSG00000037519.18	Ppfia1	chr7	protein_coding	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1
known_NIR_17054	chr7	144038945	144045189	-	144038945	144042934	5pMXE	ENSMUST00000182982.8	known	1.00	26	0	26	0	n	0.95	20	1	20	1	n	1.00	48	0	48	0	n	1.00	33	0	33	0	n	1.00	53	0	53	0	n	1.00	24	0	24	0	n	1.00	45	0	45	0	n	1.00	16	0	16	0	n	1.00	25	0	25	0	n	1.00	36	0	36	0	n	0.93	28	2	28	2	y	1.00	36	0	36	0	n	ENSMUSG00000037519.18	Ppfia1	chr7	protein_coding	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1
known_NIR_17055	chr7	144068261;144068683	144068609;144069723	-	144068261	144069723	cassetteExon	ENSMUST00000168134.10	known	0.00	0.0	19	0;0	19	n	0.00	0.0	20	0;0	20	n	0.00	0.0	38	0;0	38	n	0.00	0.0	43	0;0	43	n	0.05	2.0	41	2;2	41	y	0.00	0.0	23	0;0	23	n	0.04	1.5	34	2;1	34	n	0.00	0.0	29	0;0	29	n	0.05	1.5	26	1;2	26	n	0.00	0.0	41	0;0	41	n	0.03	0.5	16	0;1	16	n	0.00	0.0	34	0;0	34	n	ENSMUSG00000037519.18	Ppfia1	chr7	protein_coding	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1
known_NIR_17056	chr7	144471417	144482662	+	144471417	144472961	A3SS&ES	ENSMUST00000207453.2	known	0.00	0	45	0	45	n	0.00	0	25	0	25	n	0.00	0	44	0	44	n	0.00	0	37	0	37	n	0.00	0	60	0	60	n	0.00	0	11	0	11	n	0.04	2	47	2	47	y	0.00	0	26	0	26	n	0.00	0	34	0	34	n	0.00	0	57	0	57	n	0.00	0	47	0	47	n	0.03	1	38	1	38	n	ENSMUSG00000031072.15	LTO1	chr7	protein_coding	ABCE maturation factor
known_NIR_17057	chr7	144473078	144482662	+	144473078	144473347	3pMXE	ENSMUST00000033388.12	known	0.15	6	35	6	35	y	0.26	10	29	10	29	y	0.14	4	25	4	25	y	0.08	4	44	4	44	y	0.02	1	40	1	40	n	0.03	1	29	1	29	n	0.03	1	38	1	38	n	0.00	0	19	0	19	n	0.16	5	27	5	27	y	0.04	2	48	2	48	y	0.07	4	50	4	50	y	0.07	3	42	3	42	y	ENSMUSG00000031072.15	LTO1	chr7	protein_coding	ABCE maturation factor
known_NIR_17058	chr7	15679279	15679443	-	15679279	15679755	A5SS	ENSMUST00000044158.13	known	0.00	1	221	1	221	n	0.00	0	201	0	201	n	0.00	0	211	0	211	n	0.01	3	253	3	253	y	0.00	0	229	0	229	n	0.00	0	86	0	86	n	0.00	1	292	1	292	n	0.00	0	93	0	93	n	0.00	0	172	0	172	n	0.01	2	280	2	280	y	0.00	0	239	0	239	n	0.01	2	325	2	325	y	ENSMUSG00000041560.13	Nop53	chr7	protein_coding	NOP53 ribosome biogenesis factor
known_NIR_17059	chr7	15857194	15857697	+	15857198	15857697	A5SS	ENSMUST00000006178.5	known	0.06	3	51	3	51	y	0.00	0	26	0	26	n	0.04	1	24	1	24	n	0.00	0	39	0	39	n	0.00	0	38	0	38	n	0.08	1	11	1	11	n	0.05	2	42	2	42	y	0.06	1	16	1	16	n	0.00	0	39	0	39	n	0.00	0	38	0	38	n	0.00	0	45	0	45	n	0.00	0	49	0	49	n	ENSMUSG00000006021.6	Kptn	chr7	protein_coding	kaptin
known_NIR_17060	chr7	16008341	16009181	-	16008341	16009205	A5SS	ENSMUST00000172670.2	known	1.00	10	0	10	0	n	0.80	8	2	8	2	y	0.69	11	5	11	5	y	0.64	9	5	9	5	y	0.80	8	2	8	2	y	0.43	3	4	3	4	n	0.67	6	3	6	3	n	0.67	2	1	2	1	n	0.50	3	3	3	3	n	0.69	9	4	9	4	y	0.69	9	4	9	4	y	0.75	6	2	6	2	n	ENSMUSG00000041375.19	Ccdc9	chr7	protein_coding	coiled-coil domain containing 9
known_NIR_17061	chr7	16010035	16010127	-	16010032	16010127	A3SS	ENSMUST00000118976.9	known	0.55	27	22	27	22	y	0.46	31	37	31	37	y	0.53	33	29	33	29	y	0.42	16	22	16	22	y	0.61	43	27	43	27	y	0.68	25	12	25	12	y	0.37	22	38	22	38	y	0.50	21	21	21	21	y	0.56	31	24	31	24	y	0.36	21	37	21	37	y	0.48	27	29	27	29	y	0.61	53	34	53	34	y	ENSMUSG00000041375.19	Ccdc9	chr7	protein_coding	coiled-coil domain containing 9
known_NIR_17062	chr7	16014866	16015638	-	16014866	16016282	A5SS	ENSMUST00000118976.9	known	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.05	2	40	2	40	y	0.00	0	9	0	9	n	0.00	0	23	0	23	n	0.07	1	14	1	14	n	0.00	0	15	0	15	n	0.00	0	17	0	17	n	0.00	0	15	0	15	n	0.07	2	28	2	28	y	0.00	0	21	0	21	n	0.04	1	27	1	27	n	ENSMUSG00000041375.19	Ccdc9	chr7	protein_coding	coiled-coil domain containing 9
known_NIR_17063	chr7	16016775	16018150	-	16016775	16018196	A5SS	ENSMUST00000118976.9	known	0.00	0	55	0	55	n	0.00	0	29	0	29	n	0.03	2	62	2	62	y	0.00	0	37	0	37	n	0.01	1	70	1	70	n	0.06	2	30	2	30	y	0.00	0	58	0	58	n	0.09	3	30	3	30	y	0.09	4	43	4	43	y	0.00	0	66	0	66	n	0.00	0	41	0	41	n	0.02	2	82	2	82	y	ENSMUSG00000041375.19	Ccdc9	chr7	protein_coding	coiled-coil domain containing 9
known_NIR_17064	chr7	16018471	16019852	-	16018471	16020625	A5SS	ENSMUST00000118976.9	known	0.00	0	34	0	34	n	0.00	0	37	0	37	n	0.02	1	45	1	45	n	0.00	0	44	0	44	n	0.06	3	49	3	49	y	0.00	0	44	0	44	n	0.12	6	42	6	42	y	0.00	0	17	0	17	n	0.00	0	32	0	32	n	0.00	0	56	0	56	n	0.09	3	31	3	31	y	0.03	2	61	2	61	y	ENSMUSG00000041375.19	Ccdc9	chr7	protein_coding	coiled-coil domain containing 9
known_NIR_17065	chr7	16044463	16046051	+	16043786	16046051	A5SS	ENSMUST00000002152.13	known	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.30	3	7	3	7	y	0.00	0	7	0	7	n	0.20	1	4	1	4	n	0.25	3	9	3	9	y	0.00	0	7	0	7	n	0.32	6	13	6	13	y	0.22	2	7	2	7	n	0.27	4	11	4	11	y	0.21	4	15	4	15	y	ENSMUSG00000002083.14	Bbc3	chr7	protein_coding	BCL2 binding component 3
known_NIR_17066	chr7	16054805	16064538	-	16061854	16064538	3pMXE	ENSMUST00000094815.5	known	0.00	0	54	0	54	n	0.00	0	40	0	40	n	0.02	2	79	2	79	y	0.02	1	50	1	50	n	0.01	1	72	1	72	n	0.04	2	47	2	47	y	0.03	2	71	2	71	y	0.02	1	45	1	45	n	0.00	0	51	0	51	n	0.00	0	67	0	67	n	0.00	0	58	0	58	n	0.05	3	62	3	62	y	ENSMUSG00000052833.10	Sae1	chr7	protein_coding	SUMO1 activating enzyme subunit 1
known_NIR_17067	chr7	16135231	16150698	+	16134966	16150698	A5SS	ENSMUST00000214735.2	known	0.75	3	1	3	1	n	0.64	7	4	7	4	y	0.62	13	8	13	8	y	0.62	5	3	5	3	n	0.56	5	4	5	4	n	0.40	2	3	2	3	n	0.33	3	6	3	6	n	0.45	5	6	5	6	y	0.00	0	9	0	9	n	0.23	3	10	3	10	y	0.46	6	7	6	7	y	0.42	8	11	8	11	y	ENSMUSG00000059273.10	Zc3h4	chr7	protein_coding	zinc finger CCCH-type containing 4
known_NIR_17068	chr7	16163835	16167946	+	16163835;16166947	16166699;16167946	ES	ENSMUST00000098789.5	known	0.81	13	3.0	13	2;4	y	0.87	10	1.5	10	3;0	n	0.81	21	5.0	21	8;2	y	0.74	16	5.5	16	4;7	y	0.78	23	6.5	23	5;8	y	0.90	14	1.5	14	0;3	n	0.78	19	5.5	19	6;5	y	0.71	15	6.0	15	7;5	y	0.79	15	4.0	15	3;5	y	0.55	8	6.5	8	6;7	y	0.72	18	7.0	18	5;9	y	0.83	19	4.0	19	5;3	y	ENSMUSG00000059273.10	Zc3h4	chr7	protein_coding	zinc finger CCCH-type containing 4
known_NIR_17069	chr7	16187095	16187982	+	16187095	16188046	A3SS	ENSMUST00000019302.10	known	0.00	0	147	0	147	n	0.00	0	174	0	174	n	0.00	0	184	0	184	n	0.01	2	158	2	158	y	0.00	0	249	0	249	n	0.00	0	143	0	143	n	0.00	0	166	0	166	n	0.01	1	122	1	122	n	0.01	1	141	1	141	n	0.00	0	184	0	184	n	0.01	2	191	2	191	y	0.01	1	145	1	145	n	ENSMUSG00000019158.10	Tmem160	chr7	protein_coding	transmembrane protein 160
known_NIR_17070	chr7	16564128	16564251	+	16562741	16564251	A5SS	ENSMUST00000019220.16	known	0.00	0	47	0	47	n	0.04	2	43	2	43	y	0.00	0	89	0	89	n	0.00	0	46	0	46	n	0.00	0	67	0	67	n	0.00	0	45	0	45	n	0.00	0	73	0	73	n	0.00	0	38	0	38	n	0.00	0	38	0	38	n	0.00	0	78	0	78	n	0.00	0	49	0	49	n	0.00	0	46	0	46	n	ENSMUSG00000030374.16	Strn4	chr7	protein_coding	striatin, calmodulin binding protein 4
known_NIR_17071	chr7	16565063	16565271	+	16565063	16565390	A3SS	ENSMUST00000019220.16	known	0.00	0	8	0	8	n	0.27	3	8	3	8	y	0.39	7	11	7	11	y	0.23	3	10	3	10	y	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.07	1	13	1	13	n	0.00	0	7	0	7	n	0.33	3	6	3	6	n	0.27	6	16	6	16	y	0.00	0	7	0	7	n	0.27	4	11	4	11	y	ENSMUSG00000030374.16	Strn4	chr7	protein_coding	striatin, calmodulin binding protein 4
known_NIR_17072	chr7	16565063	16565271	+	16565063	16565411	A3SS	ENSMUST00000108495.9	known	0.00	0	19	0	19	n	0.12	3	22	3	22	y	0.16	7	38	7	38	y	0.11	3	24	3	24	y	0.00	0	37	0	37	n	0.00	0	27	0	27	n	0.03	1	31	1	31	n	0.00	0	26	0	26	n	0.12	3	22	3	22	y	0.15	6	33	6	33	y	0.00	0	42	0	42	n	0.12	4	28	4	28	y	ENSMUSG00000030374.16	Strn4	chr7	protein_coding	striatin, calmodulin binding protein 4
known_NIR_17073	chr7	16565063	16565411	+	16565063	16565390	A3SS	ENSMUST00000019220.16	known	0.70	19	8	19	8	y	0.73	22	8	22	8	y	0.78	38	11	38	11	y	0.71	24	10	24	10	y	0.79	37	10	37	10	y	0.87	27	4	27	4	y	0.70	31	13	31	13	y	0.79	26	7	26	7	y	0.79	22	6	22	6	y	0.67	33	16	33	16	y	0.86	42	7	42	7	y	0.72	28	11	28	11	y	ENSMUSG00000030374.16	Strn4	chr7	protein_coding	striatin, calmodulin binding protein 4
known_NIR_17074	chr7	16742633	16742918	-	16742637	16742918	A3SS	ENSMUST00000003183.12	known	0.00	0	69	0	69	n	0.00	0	75	0	75	n	0.04	2	53	2	53	y	0.09	10	101	10	101	y	0.00	0	102	0	102	n	0.00	0	50	0	50	n	0.00	0	107	0	107	n	0.08	4	47	4	47	y	0.03	2	72	2	72	y	0.02	3	133	3	133	y	0.00	0	90	0	90	n	0.03	4	112	4	112	y	ENSMUSG00000003099.12	Ppp5c	chr7	protein_coding	protein phosphatase 5, catalytic subunit
known_NIR_17075	chr7	16742637	16743800	-	16742637;16742983	16742918;16743800	ES	ENSMUST00000003183.12	known	0.00	0	74.5	0	69;80	n	0.00	0	75.0	0	75;75	n	0.00	0	50.5	0	53;48	n	0.00	0	111.0	0	101;121	n	0.02	2	110.5	2	102;119	y	0.00	0	48.0	0	50;46	n	0.00	0	107.5	0	107;108	n	0.00	0	50.5	0	47;54	n	0.00	0	72.0	0	72;72	n	0.01	1	133.5	1	133;134	n	0.00	0	96.0	0	90;102	n	0.00	0	108.5	0	112;105	n	ENSMUSG00000003099.12	Ppp5c	chr7	protein_coding	protein phosphatase 5, catalytic subunit
known_NIR_17076	chr7	16742637	16743800	-	16742983	16743800	A3SS	ENSMUST00000124573.8	known	0.00	0	80	0	80	n	0.00	0	75	0	75	n	0.00	0	48	0	48	n	0.00	0	121	0	121	n	0.02	2	119	2	119	y	0.00	0	46	0	46	n	0.00	0	108	0	108	n	0.00	0	54	0	54	n	0.00	0	72	0	72	n	0.01	1	134	1	134	n	0.00	0	102	0	102	n	0.00	0	105	0	105	n	ENSMUSG00000003099.12	Ppp5c	chr7	protein_coding	protein phosphatase 5, catalytic subunit
known_NIR_17077	chr7	16749470	16761618	-	16749470;16756581	16756340;16761618	ES	ENSMUST00000003183.12	known	0.02	1	65.5	1	71;60	n	0.00	0	56.0	0	69;43	n	0.01	1	66.0	1	64;68	n	0.00	0	94.0	0	97;91	n	0.01	1	103.0	1	104;102	n	0.05	2	40.0	2	46;34	y	0.03	4	115.5	4	139;92	y	0.02	1	49.0	1	46;52	n	0.00	0	66.5	0	72;61	n	0.00	0	105.0	0	111;99	n	0.00	0	69.0	0	78;60	n	0.00	0	94.5	0	89;100	n	ENSMUSG00000003099.12	Ppp5c	chr7	protein_coding	protein phosphatase 5, catalytic subunit
known_NIR_17078	chr7	16749470	16761618	-	16756581	16761618	3pMXE	ENSMUST00000145997.2	known	0.02	1	60	1	60	n	0.00	0	43	0	43	n	0.01	1	68	1	68	n	0.00	0	91	0	91	n	0.01	1	102	1	102	n	0.06	2	34	2	34	y	0.04	4	92	4	92	y	0.02	1	52	1	52	n	0.00	0	61	0	61	n	0.00	0	99	0	99	n	0.00	0	60	0	60	n	0.00	0	100	0	100	n	ENSMUSG00000003099.12	Ppp5c	chr7	protein_coding	protein phosphatase 5, catalytic subunit
known_NIR_17079	chr7	16756581	16758512	-	16756581	16761618	A5SS	ENSMUST00000003183.12	known	0.00	0	60	0	60	n	0.04	2	43	2	43	y	0.00	0	68	0	68	n	0.00	0	91	0	91	n	0.01	1	102	1	102	n	0.00	0	34	0	34	n	0.01	1	92	1	92	n	0.00	0	52	0	52	n	0.02	1	61	1	61	n	0.00	0	99	0	99	n	0.00	0	60	0	60	n	0.00	0	100	0	100	n	ENSMUSG00000003099.12	Ppp5c	chr7	protein_coding	protein phosphatase 5, catalytic subunit
known_NIR_17080	chr7	18627273	18627704	-	18627273	18627692	A5SS	ENSMUST00000098780.10	known	0.67	4	2	4	2	n	0.45	5	6	5	6	y	0.29	2	5	2	5	n	0.44	4	5	4	5	n	0.00	0	6	0	6	n	0.30	3	7	3	7	y	0.30	3	7	3	7	y	0.71	5	2	5	2	n	0.27	3	8	3	8	y	0.27	3	8	3	8	y	0.60	3	2	3	2	n	0.31	4	9	4	9	y	ENSMUSG00000074358.10	Ccdc61	chr7	protein_coding	coiled-coil domain containing 61
known_NIR_17081	chr7	18633607	18634844	-	18633638	18634844	A3SS	ENSMUST00000098780.10	known	0.14	2	12	2	12	y	0.00	0	8	0	8	n	0.08	1	11	1	11	n	0.27	4	11	4	11	y	0.00	0	14	0	14	n	0.17	1	5	1	5	n	0.23	3	10	3	10	y	0.22	2	7	2	7	n	0.36	4	7	4	7	y	0.08	1	11	1	11	n	0.12	3	21	3	21	y	0.00	0	11	0	11	n	ENSMUSG00000074358.10	Ccdc61	chr7	protein_coding	coiled-coil domain containing 61
known_NIR_17082	chr7	18780827	18781446	+	18780827	18781375	A3SS	ENSMUST00000023882.14	known	0.00	0	106	0	106	n	0.00	0	106	0	106	n	0.02	2	102	2	102	y	0.00	0	87	0	87	n	0.00	0	130	0	130	n	0.00	0	54	0	54	n	0.00	0	101	0	101	n	0.00	0	67	0	67	n	0.00	0	60	0	60	n	0.00	0	103	0	103	n	0.00	0	106	0	106	n	0.00	0	105	0	105	n	ENSMUSG00000023118.16	Sympk	chr7	protein_coding	symplekin
known_NIR_17083	chr7	18812162	18813967	+	18812162	18816201	A3SS	ENSMUST00000138997.2	known	0.91	30	3	30	3	y	1.00	34	0	34	0	n	1.00	41	0	41	0	n	1.00	43	0	43	0	n	0.99	70	1	70	1	n	1.00	41	0	41	0	n	0.97	63	2	63	2	y	1.00	43	0	43	0	n	0.97	35	1	35	1	n	1.00	57	0	57	0	n	0.93	41	3	41	3	y	1.00	52	0	52	0	n	ENSMUSG00000030410.17	Dmwd	chr7	protein_coding	dystrophia myotonica-containing WD repeat motif
known_NIR_17084	chr7	18812162	18816201	+	18812162;18815226	18813967;18816201	ES	ENSMUST00000108479.2	known	0.09	3	32.0	3	30;34	y	0.00	0	36.5	0	34;39	n	0.00	0	43.5	0	41;46	n	0.00	0	37.5	0	43;32	n	0.02	1	64.0	1	70;58	n	0.00	0	35.0	0	41;29	n	0.04	2	55.0	2	63;47	y	0.00	0	30.0	0	43;17	n	0.03	1	29.0	1	35;23	n	0.00	0	56.0	0	57;55	n	0.07	3	39.5	3	41;38	y	0.00	0	49.0	0	52;46	n	ENSMUSG00000030410.17	Dmwd	chr7	protein_coding	dystrophia myotonica-containing WD repeat motif
known_NIR_17085	chr7	18815226	18816201	+	18812162	18816201	A5SS	ENSMUST00000138997.2	known	0.92	34	3	34	3	y	1.00	39	0	39	0	n	1.00	46	0	46	0	n	1.00	32	0	32	0	n	0.98	58	1	58	1	n	1.00	29	0	29	0	n	0.96	47	2	47	2	y	1.00	17	0	17	0	n	0.96	23	1	23	1	n	1.00	55	0	55	0	n	0.93	38	3	38	3	y	1.00	46	0	46	0	n	ENSMUSG00000030410.17	Dmwd	chr7	protein_coding	dystrophia myotonica-containing WD repeat motif
known_NIR_17086	chr7	18815226	18816201	+	18815226;18815918	18815844;18816201	ES	ENSMUST00000032570.14	known	0.62	34	20.5	34	19;22	y	0.64	39	22.0	39	21;23	y	0.67	46	23.0	46	22;24	y	0.61	32	20.5	32	21;20	y	0.69	58	25.5	58	21;30	y	0.65	29	15.5	29	14;17	y	0.57	47	36.0	47	33;39	y	0.56	17	13.5	17	14;13	y	0.59	23	16.0	23	18;14	y	0.69	55	24.5	55	31;18	y	0.64	38	21.0	38	13;29	y	0.64	46	25.5	46	25;26	y	ENSMUSG00000030410.17	Dmwd	chr7	protein_coding	dystrophia myotonica-containing WD repeat motif
known_NIR_17087	chr7	18815918	18816201	+	18812162	18816201	A5SS	ENSMUST00000138997.2	known	0.88	22	3	22	3	y	1.00	23	0	23	0	n	1.00	24	0	24	0	n	1.00	20	0	20	0	n	0.97	30	1	30	1	n	1.00	17	0	17	0	n	0.95	39	2	39	2	y	1.00	13	0	13	0	n	0.93	14	1	14	1	n	1.00	18	0	18	0	n	0.91	29	3	29	3	y	1.00	26	0	26	0	n	ENSMUSG00000030410.17	Dmwd	chr7	protein_coding	dystrophia myotonica-containing WD repeat motif
known_NIR_17088	chr7	18822025	18822113	+	18822034	18822113	A5SS	ENSMUST00000108474.2	known	1.00	2	0	2	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.25	1	3	1	3	n	1.00	2	0	2	0	n	0.70	7	3	7	3	y	0.50	2	2	2	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	2	4	2	4	n	ENSMUSG00000030409.17	Dmpk	chr7	protein_coding	dystrophia myotonica-protein kinase
known_NIR_17089	chr7	18822174	18822836	+	18822189	18822836	A5SS	ENSMUST00000032568.14	known	0.50	14	14	14	14	y	0.50	14	14	14	14	y	0.30	6	14	6	14	y	0.36	8	14	8	14	y	0.42	22	30	22	30	y	0.35	7	13	7	13	y	0.34	22	42	22	42	y	0.48	11	12	11	12	y	0.50	11	11	11	11	y	0.09	2	21	2	21	y	0.33	9	18	9	18	y	0.32	9	19	9	19	y	ENSMUSG00000030409.17	Dmpk	chr7	protein_coding	dystrophia myotonica-protein kinase
known_NIR_17090	chr7	18822921	18825606	+	18822921	18824854	A3SS&ES	ENSMUST00000128422.8	known	0.00	0	30	0	30	n	0.00	0	37	0	37	n	0.00	0	18	0	18	n	0.10	2	18	2	18	y	0.00	0	63	0	63	n	0.00	0	14	0	14	n	0.02	1	51	1	51	n	0.00	0	18	0	18	n	0.00	0	19	0	19	n	0.00	0	21	0	21	n	0.00	0	35	0	35	n	0.05	1	21	1	21	n	ENSMUSG00000030409.17	Dmpk	chr7	protein_coding	dystrophia myotonica-protein kinase
known_NIR_17091	chr7	18822921	18825606	+	18822921;18824965	18824854;18825606	ES	ENSMUST00000032568.14	known	0.00	0	38.0	0	30;46	n	0.00	0	36.5	0	37;36	n	0.00	0	17.5	0	18;17	n	0.10	2	19.0	2	18;20	y	0.00	0	55.0	0	63;47	n	0.00	0	13.5	0	14;13	n	0.02	1	54.5	1	51;58	n	0.00	0	20.0	0	18;22	n	0.00	0	20.5	0	19;22	n	0.00	0	23.0	0	21;25	n	0.00	0	32.5	0	35;30	n	0.04	1	21.5	1	21;22	n	ENSMUSG00000030409.17	Dmpk	chr7	protein_coding	dystrophia myotonica-protein kinase
known_NIR_17092	chr7	18824965	18825580	+	18824965	18825606	A3SS	ENSMUST00000032568.14	known	0.04	2	46	2	46	y	0.00	0	36	0	36	n	0.00	0	17	0	17	n	0.05	1	20	1	20	n	0.02	1	47	1	47	n	0.00	0	13	0	13	n	0.03	2	58	2	58	y	0.00	0	22	0	22	n	0.04	1	22	1	22	n	0.07	2	25	2	25	y	0.03	1	30	1	30	n	0.12	3	22	3	22	y	ENSMUSG00000030409.17	Dmpk	chr7	protein_coding	dystrophia myotonica-protein kinase
known_NIR_17093	chr7	18825961	18826875	+	18826557	18826875	A5SS&ES	ENSMUST00000137219.8	known	0.00	0	43	0	43	n	0.00	0	40	0	40	n	0.00	0	20	0	20	n	0.00	0	30	0	30	n	0.00	0	71	0	71	n	0.06	1	15	1	15	n	0.01	1	78	1	78	n	0.00	0	16	0	16	n	0.00	0	33	0	33	n	0.00	0	25	0	25	n	0.10	4	35	4	35	y	0.00	0	30	0	30	n	ENSMUSG00000030409.17	Dmpk	chr7	protein_coding	dystrophia myotonica-protein kinase
known_NIR_17094	chr7	18825961;18826557	18826133;18826875	+	18825961	18826875	cassetteExon	ENSMUST00000108473.10	known	1.00	30.0	0	17;43	0	n	1.00	31.0	0	22;40	0	n	1.00	16.0	0	12;20	0	n	1.00	20.0	0	10;30	0	n	1.00	52.5	0	34;71	0	n	0.93	12.5	1	10;15	1	n	0.98	64.5	1	51;78	1	n	1.00	13.0	0	10;16	0	n	1.00	20.0	0	7;33	0	n	1.00	16.5	0	8;25	0	n	0.86	24.5	4	14;35	4	y	1.00	24.5	0	19;30	0	n	ENSMUSG00000030409.17	Dmpk	chr7	protein_coding	dystrophia myotonica-protein kinase
known_NIR_17095	chr7	18826179	18826343	+	18826179	18826468	A3SS	ENSMUST00000032568.14	known	0.32	11	23	11	23	y	0.33	16	32	16	32	y	0.35	6	11	6	11	y	0.33	6	12	6	12	y	0.37	16	27	16	27	y	0.15	2	11	2	11	y	0.30	17	40	17	40	y	0.30	3	7	3	7	y	0.30	3	7	3	7	y	0.17	4	19	4	19	y	0.30	6	14	6	14	y	0.23	7	23	7	23	y	ENSMUSG00000030409.17	Dmpk	chr7	protein_coding	dystrophia myotonica-protein kinase
known_NIR_17096	chr7	18826179	18826472	+	18826179	18826343	A3SS	ENSMUST00000154199.8	known	0.52	12	11	12	11	y	0.38	10	16	10	16	y	0.62	10	6	10	6	y	0.65	11	6	11	6	y	0.64	28	16	28	16	y	0.60	3	2	3	2	n	0.65	32	17	32	17	y	0.73	8	3	8	3	y	0.84	16	3	16	3	y	0.76	13	4	13	4	y	0.76	19	6	19	6	y	0.59	10	7	10	7	y	ENSMUSG00000030409.17	Dmpk	chr7	protein_coding	dystrophia myotonica-protein kinase
known_NIR_17097	chr7	18826179	18826472	+	18826179	18826468	A3SS	ENSMUST00000032568.14	known	0.34	12	23	12	23	y	0.24	10	32	10	32	y	0.48	10	11	10	11	y	0.48	11	12	11	12	y	0.51	28	27	28	27	y	0.21	3	11	3	11	y	0.44	32	40	32	40	y	0.53	8	7	8	7	y	0.70	16	7	16	7	y	0.41	13	19	13	19	y	0.58	19	14	19	14	y	0.30	10	23	10	23	y	ENSMUSG00000030409.17	Dmpk	chr7	protein_coding	dystrophia myotonica-protein kinase
known_NIR_17098	chr7	18915280	18915634	+	18915148	18915634	A5SS	ENSMUST00000120595.8	known	0.00	0	12	0	12	n	0.14	1	6	1	6	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.25	3	9	3	9	y	0.00	0	14	0	14	n	0.05	1	18	1	18	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	ENSMUSG00000040811.16	Eml2	chr7	protein_coding	echinoderm microtubule associated protein like 2
known_NIR_17099	chr7	18935578	18936434	+	18935578;18935852	18935755;18936434	ES	ENSMUST00000117338.8	known	0.00	0	16.0	0	14;18	n	0.12	2	15.0	2	13;17	y	0.00	0	21.0	0	27;15	n	0.08	2	23.0	2	23;23	y	0.07	2	25.5	2	21;30	y	0.00	0	14.0	0	20;8	n	0.00	0	24.0	0	26;22	n	0.00	0	17.5	0	25;10	n	0.00	0	18.0	0	19;17	n	0.06	1	15.5	1	13;18	n	0.00	0	17.5	0	10;25	n	0.00	0	22.5	0	16;29	n	ENSMUSG00000040811.16	Eml2	chr7	protein_coding	echinoderm microtubule associated protein like 2
known_NIR_17100	chr7	18962509	18989281	+	18962509	18978679	3pMXE	ENSMUST00000063976.9	known	0.00	0	63	0	63	n	0.00	0	39	0	39	n	0.05	2	36	2	36	y	0.00	0	74	0	74	n	0.01	1	81	1	81	n	0.07	3	38	3	38	y	0.02	1	51	1	51	n	0.00	0	28	0	28	n	0.00	0	46	0	46	n	0.02	2	80	2	80	y	0.00	0	48	0	48	n	0.02	1	58	1	58	n	ENSMUSG00000052214.10	Opa3	chr7	protein_coding	optic atrophy 3
known_NIR_17101	chr7	19084717	19086558	+	19084717	19086554	A3SS	ENSMUST00000003645.9	known	0.00	0	19	0	19	n	0.00	0	33	0	33	n	0.00	0	30	0	30	n	0.00	0	17	0	17	n	0.00	0	23	0	23	n	0.00	0	7	0	7	n	0.00	0	31	0	31	n	0.00	0	19	0	19	n	0.05	1	18	1	18	n	0.00	0	27	0	27	n	0.00	0	15	0	15	n	0.09	2	20	2	20	y	ENSMUSG00000003549.10	Ercc1	chr7	protein_coding	excision repair cross-complementing rodent repair deficiency, complementation group 1
known_NIR_17102	chr7	19086630	19088256	+	19086630	19088251	A3SS	ENSMUST00000003645.9	known	0.10	2	18	2	18	y	0.00	0	22	0	22	n	0.00	0	18	0	18	n	0.06	1	17	1	17	n	0.03	1	28	1	28	n	0.00	0	20	0	20	n	0.00	0	32	0	32	n	0.00	0	11	0	11	n	0.00	0	19	0	19	n	0.03	1	29	1	29	n	0.00	0	16	0	16	n	0.00	0	28	0	28	n	ENSMUSG00000003549.10	Ercc1	chr7	protein_coding	excision repair cross-complementing rodent repair deficiency, complementation group 1
known_NIR_17103	chr7	19095241	19102471	+	19095241	19102467	A3SS	ENSMUST00000140836.8	known	0.33	2	4	2	4	n	0.33	1	2	1	2	n	0.21	3	11	3	11	y	0.29	2	5	2	5	n	0.07	1	14	1	14	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.11	1	8	1	8	n	0.19	3	13	3	13	y	0.00	0	3	0	3	n	0.20	1	4	1	4	n	ENSMUSG00000040734.15	Ppp1r13l	chr7	protein_coding	protein phosphatase 1, regulatory subunit 13 like
known_NIR_17104	chr7	19162043	19163251	-	19162043;19163110	19163031;19163251	ES	ENSMUST00000239292.2	known	0.89	21	2.5	21	1;4	n	0.95	28	1.5	28	2;1	n	0.95	53	3.0	53	1;5	n	0.95	28	1.5	28	3;0	n	0.93	33	2.5	33	3;2	y	1.00	23	0.0	23	0;0	n	0.91	21	2.0	21	4;0	n	0.83	12	2.5	12	3;2	y	1.00	24	0.0	24	0;0	n	0.96	27	1.0	27	1;1	n	0.98	24	0.5	24	1;0	n	0.90	28	3.0	28	3;3	y	ENSMUSG00000030397.12	Mark4	chr7	protein_coding	MAP/microtubule affinity regulating kinase 4
known_NIR_17105	chr7	19242757;19248193	19248126;19248347	+	19242757	19248347	cassetteExon	ENSMUST00000136873.8	known	1.00	76.5	0	76;77	0	n	0.96	53.0	2	57;49	2	y	1.00	87.5	0	90;85	0	n	0.97	61.5	2	59;64	2	y	0.98	122.0	2	130;114	2	y	1.00	63.5	0	67;60	0	n	0.99	105.0	1	104;106	1	n	1.00	64.0	0	68;60	0	n	0.97	56.5	2	57;56	2	y	0.99	78.0	1	83;73	1	n	1.00	87.0	0	80;94	0	n	0.96	54.5	2	53;56	2	y	ENSMUSG00000002043.18	Trappc6a	chr7	protein_coding	trafficking protein particle complex 6A
known_NIR_17106	chr7	19248464	19248932	+	19248464	19248950	A3SS	ENSMUST00000136873.8	known	0.97	62	2	62	2	y	0.97	56	2	56	2	y	1.00	60	0	60	0	n	0.97	63	2	63	2	y	0.99	92	1	92	1	n	0.98	45	1	45	1	n	0.97	105	3	105	3	y	0.94	46	3	46	3	y	0.95	58	3	58	3	y	0.99	73	1	73	1	n	0.97	75	2	75	2	y	0.99	68	1	68	1	n	ENSMUSG00000002043.18	Trappc6a	chr7	protein_coding	trafficking protein particle complex 6A
known_NIR_17107	chr7	19248464	19249129	+	19248464;19249015	19248932;19249129	ES	ENSMUST00000147114.2	known	0.01	1	66.0	1	62;70	n	0.00	0	57.5	0	56;59	n	0.05	3	61.0	3	60;62	y	0.03	2	68.5	2	63;74	y	0.03	3	93.5	3	92;95	y	0.09	5	52.0	5	45;59	y	0.02	2	96.5	2	105;88	y	0.00	0	52.5	0	46;59	n	0.02	1	51.5	1	58;45	n	0.00	0	70.5	0	73;68	n	0.03	2	76.0	2	75;77	y	0.03	2	64.0	2	68;60	y	ENSMUSG00000002043.18	Trappc6a	chr7	protein_coding	trafficking protein particle complex 6A
known_NIR_17108	chr7	19248464	19249129	+	19248464;19249015	19248950;19249129	ES	ENSMUST00000136873.8	known	0.03	1	36.0	1	2;70	n	0.00	0	30.5	0	2;59	n	0.09	3	31.0	3	0;62	n	0.05	2	38.0	2	2;74	y	0.06	3	48.0	3	1;95	n	0.14	5	30.0	5	1;59	n	0.04	2	45.5	2	3;88	y	0.00	0	31.0	0	3;59	n	0.04	1	24.0	1	3;45	n	0.00	0	34.5	0	1;68	n	0.05	2	39.5	2	2;77	y	0.06	2	30.5	2	1;60	n	ENSMUSG00000002043.18	Trappc6a	chr7	protein_coding	trafficking protein particle complex 6A
known_NIR_17109	chr7	19248464	19249129	+	19249015	19249129	A5SS	ENSMUST00000129808.2	known	0.01	1	70	1	70	n	0.00	0	59	0	59	n	0.05	3	62	3	62	y	0.03	2	74	2	74	y	0.03	3	95	3	95	y	0.08	5	59	5	59	y	0.02	2	88	2	88	y	0.00	0	59	0	59	n	0.02	1	45	1	45	n	0.00	0	68	0	68	n	0.03	2	77	2	77	y	0.03	2	60	2	60	y	ENSMUSG00000002043.18	Trappc6a	chr7	protein_coding	trafficking protein particle complex 6A
known_NIR_17110	chr7	19249222	19249887	+	19249222	19249771	A3SS	ENSMUST00000136873.8	known	0.00	0	82	0	82	n	0.01	1	106	1	106	n	0.02	2	82	2	82	y	0.08	7	82	7	82	y	0.04	4	103	4	103	y	0.00	0	60	0	60	n	0.01	1	128	1	128	n	0.01	1	66	1	66	n	0.00	0	62	0	62	n	0.03	3	109	3	109	y	0.01	1	67	1	67	n	0.04	3	68	3	68	y	ENSMUSG00000002043.18	Trappc6a	chr7	protein_coding	trafficking protein particle complex 6A
known_NIR_17111	chr7	19299601	19305354	-	19299601	19307234	A5SS	ENSMUST00000117222.2	known	0.00	0	53	0	53	n	0.00	0	54	0	54	n	0.02	1	58	1	58	n	0.03	2	60	2	60	y	0.00	0	84	0	84	n	0.00	0	43	0	43	n	0.04	3	66	3	66	y	0.00	0	52	0	52	n	0.02	1	43	1	43	n	0.03	2	75	2	75	y	0.03	3	109	3	109	y	0.00	0	79	0	79	n	ENSMUSG00000044709.7	Gemin7	chr7	protein_coding	gem nuclear organelle associated protein 7
known_NIR_17112	chr7	19299601	19306832	-	19299601	19307234	A5SS	ENSMUST00000117222.2	known	0.00	0	53	0	53	n	0.00	0	54	0	54	n	0.00	0	58	0	58	n	0.00	0	60	0	60	n	0.00	0	84	0	84	n	0.02	1	43	1	43	n	0.00	0	66	0	66	n	0.00	0	52	0	52	n	0.00	0	43	0	43	n	0.01	1	75	1	75	n	0.03	3	109	3	109	y	0.00	0	79	0	79	n	ENSMUSG00000044709.7	Gemin7	chr7	protein_coding	gem nuclear organelle associated protein 7
known_NIR_17113	chr7	19299601	19306964	-	19299601	19307234	A5SS	ENSMUST00000117222.2	known	0.00	0	53	0	53	n	0.00	0	54	0	54	n	0.00	0	58	0	58	n	0.00	0	60	0	60	n	0.00	0	84	0	84	n	0.00	0	43	0	43	n	0.03	2	66	2	66	y	0.00	0	52	0	52	n	0.04	2	43	2	43	y	0.05	4	75	4	75	y	0.01	1	109	1	109	n	0.01	1	79	1	79	n	ENSMUSG00000044709.7	Gemin7	chr7	protein_coding	gem nuclear organelle associated protein 7
known_NIR_17114	chr7	19299601;19303807	19303663;19307234	-	19299601	19307234	cassetteExon	ENSMUST00000117222.2	known	0.04	2.0	53	2;2	53	y	0.00	0.0	54	0;0	54	n	0.00	0.0	58	0;0	58	n	0.00	0.0	60	0;0	60	n	0.01	0.5	84	0;1	84	n	0.00	0.0	43	0;0	43	n	0.00	0.0	66	0;0	66	n	0.00	0.0	52	0;0	52	n	0.02	1.0	43	1;1	43	n	0.03	2.0	75	1;3	75	n	0.00	0.0	109	0;0	109	n	0.02	1.5	79	1;2	79	n	ENSMUSG00000044709.7	Gemin7	chr7	protein_coding	gem nuclear organelle associated protein 7
known_NIR_17115	chr7	19318455	19318705	-	19318455	19318709	A5SS	ENSMUST00000086041.7	known	0.60	12	8	12	8	y	0.60	9	6	9	6	y	0.56	10	8	10	8	y	0.43	6	8	6	8	y	0.50	9	9	9	9	y	0.29	2	5	2	5	n	0.25	2	6	2	6	n	0.73	11	4	11	4	y	0.45	5	6	5	6	y	0.79	11	3	11	3	y	0.64	9	5	9	5	y	0.43	6	8	6	8	y	ENSMUSG00000061028.8	Clasrp	chr7	protein_coding	CLK4-associating serine/arginine rich protein
known_NIR_17116	chr7	19324260	19325031	-	19324260	19325015	A5SS	ENSMUST00000086041.7	known	0.38	9	15	9	15	y	0.48	13	14	13	14	y	0.33	8	16	8	16	y	0.21	3	11	3	11	y	0.25	11	33	11	33	y	0.07	1	13	1	13	n	0.12	2	15	2	15	y	0.40	8	12	8	12	y	0.39	9	14	9	14	y	0.14	4	25	4	25	y	0.06	1	17	1	17	n	0.19	7	30	7	30	y	ENSMUSG00000061028.8	Clasrp	chr7	protein_coding	CLK4-associating serine/arginine rich protein
known_NIR_17117	chr7	19337230	19338250	-	19337230	19338337	A5SS	ENSMUST00000086041.7	known	0.05	1	19	1	19	n	0.00	0	9	0	9	n	0.17	2	10	2	10	y	0.17	2	10	2	10	y	0.11	2	16	2	16	y	0.17	1	5	1	5	n	0.13	2	13	2	13	y	0.00	0	2	0	2	n	0.07	1	14	1	14	n	0.00	0	20	0	20	n	0.00	0	9	0	9	n	0.08	1	12	1	12	n	ENSMUSG00000061028.8	Clasrp	chr7	protein_coding	CLK4-associating serine/arginine rich protein
known_NIR_17118	chr7	19350362	19353439	-	19350362;19351844	19351687;19353439	ES	ENSMUST00000094762.10	known	-	-	-	-	-	-	0.00	0	0.5	0	0;1	n	0.00	0	12.5	0	12;13	n	0.00	0	3.5	0	3;4	n	0.00	0	6.5	0	7;6	n	0.00	0	5.5	0	5;6	n	0.00	0	9.0	0	12;6	n	0.21	2	7.5	2	9;6	y	0.00	0	1.0	0	2;0	n	0.00	0	0.5	0	1;0	n	0.00	0	5.0	0	6;4	n	0.00	0	2.0	0	4;0	n	ENSMUSG00000002983.18	Relb	chr7	protein_coding	avian reticuloendotheliosis viral (v-rel) oncogene related B
known_NIR_17119	chr7	19351328	19351687	-	19350362	19351687	A3SS	ENSMUST00000094762.10	known	1.00	1	0	1	0	n	-	-	-	-	-	-	0.20	3	12	3	12	y	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.17	1	5	1	5	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	ENSMUSG00000002983.18	Relb	chr7	protein_coding	avian reticuloendotheliosis viral (v-rel) oncogene related B
known_NIR_17120	chr7	19389755;19396158	19396070;19398859	-	19389755	19398859	cassetteExon	ENSMUST00000055242.11	known	0.06	4.0	67	7;1	67	n	0.00	0.0	58	0;0	58	n	0.00	0.0	129	0;0	129	n	0.02	2.0	108	3;1	108	n	0.04	6.0	145	8;4	145	y	0.02	1.5	86	3;0	86	n	0.03	2.5	80	5;0	80	n	0.01	1.0	80	2;0	80	n	0.04	4.0	89	6;2	89	y	0.02	3.0	156	4;2	156	y	0.05	3.0	63	6;0	63	n	0.01	1.0	104	2;0	104	n	ENSMUSG00000002981.11	Clptm1	chr7	protein_coding	cleft lip and palate associated transmembrane protein 1
known_NIR_17121	chr7	19389755;19396267	19396070;19398859	-	19389755	19398859	cassetteExon	ENSMUST00000055242.11	known	0.06	4.5	67	7;2	67	y	0.00	0.0	58	0;0	58	n	0.01	1.0	129	0;2	129	n	0.02	2.5	108	3;2	108	y	0.04	5.5	145	8;3	145	y	0.02	1.5	86	3;0	86	n	0.05	4.5	80	5;4	80	y	0.02	1.5	80	2;1	80	n	0.04	3.5	89	6;1	89	n	0.03	4.0	156	4;4	156	y	0.08	5.5	63	6;5	63	y	0.03	3.0	104	2;4	104	y	ENSMUSG00000002981.11	Clptm1	chr7	protein_coding	cleft lip and palate associated transmembrane protein 1
known_NIR_17122	chr7	19407538	19415230	-	19407538	19410647	5pMXE	ENSMUST00000003074.16	known	0.01	11	1025	11	1025	y	0.01	13	1169	13	1169	y	0.00	8	2121	8	2121	y	0.01	6	1017	6	1017	y	0.00	6	1675	6	1675	y	0.00	2	1073	2	1073	y	0.00	5	1644	5	1644	y	0.00	2	1178	2	1178	y	0.01	9	759	9	759	y	0.01	15	1264	15	1264	y	0.01	10	951	10	951	y	0.01	12	1164	12	1164	y	ENSMUSG00000002992.18	Apoc2	chr7	protein_coding	apolipoprotein C-II
known_NIR_17123	chr7	19407538	19415230	-	19407538;19410809	19410647;19415230	ES	ENSMUST00000127648.4	known	0.02	11	537.0	11	1025;49	y	0.02	13	604.0	13	1169;39	y	0.01	8	1067.5	8	2121;14	y	0.01	6	535.5	6	1017;54	y	0.01	6	858.0	6	1675;41	y	0.00	2	542.0	2	1073;11	y	0.01	5	843.0	5	1644;42	y	0.00	2	596.0	2	1178;14	y	0.02	9	398.0	9	759;37	y	0.02	15	661.5	15	1264;59	y	0.02	10	508.0	10	951;65	y	0.02	12	605.5	12	1164;47	y	ENSMUSG00000109350.2	Gm44805	chr7	protein_coding	predicted gene 44805
known_NIR_17124	chr7	19410809	19415230	-	19410809	19411791	5pMXE	ENSMUST00000142352.9	known	0.88	49	7	49	7	y	0.89	39	5	39	5	y	0.44	14	18	14	18	y	0.90	54	6	54	6	y	0.75	41	14	41	14	y	0.58	11	8	11	8	y	0.89	42	5	42	5	y	0.70	14	6	14	6	y	0.88	37	5	37	5	y	0.84	59	11	59	11	y	0.81	65	15	65	15	y	0.87	47	7	47	7	y	ENSMUSG00000002992.18	Apoc2	chr7	protein_coding	apolipoprotein C-II
known_NIR_17125	chr7	19412667	19415230	-	19407538	19415230	A3SS	ENSMUST00000150569.9	known	1.00	7732	11	7732	11	y	1.00	8218	13	8218	13	y	1.00	4195	8	4195	8	y	1.00	7035	6	7035	6	y	1.00	10090	6	10090	6	y	1.00	3742	2	3742	2	y	1.00	9098	5	9098	5	y	1.00	3770	2	3770	2	y	1.00	6867	9	6867	9	y	1.00	9676	15	9676	15	y	1.00	8982	10	8982	10	y	1.00	8633	12	8633	12	y	ENSMUSG00000109350.2	Gm44805	chr7	protein_coding	predicted gene 44805
known_NIR_17126	chr7	19412667	19415230	-	19410809	19415230	A3SS	ENSMUST00000127648.4	known	0.99	7732	49	7732	49	y	1.00	8218	39	8218	39	y	1.00	4195	14	4195	14	y	0.99	7035	54	7035	54	y	1.00	10090	41	10090	41	y	1.00	3742	11	3742	11	y	1.00	9098	42	9098	42	y	1.00	3770	14	3770	14	y	0.99	6867	37	6867	37	y	0.99	9676	59	9676	59	y	0.99	8982	65	8982	65	y	0.99	8633	47	8633	47	y	ENSMUSG00000109350.2	Gm44805	chr7	protein_coding	predicted gene 44805
known_NIR_17127	chr7	19423561	19426336	-	19423561;19425960	19425813;19426336	ES	ENSMUST00000108451.4	known	0.00	83	28464.5	83	30910;26019	y	0.00	107	33159.5	107	36933;29386	y	0.00	28	16807.0	28	18018;15596	y	0.00	73	27691.0	73	28727;26655	y	0.00	67	27662.0	67	29826;25498	y	0.00	23	10028.0	23	11002;9054	y	0.00	82	30009.0	82	33036;26982	y	0.00	35	13063.0	35	14072;12054	y	0.00	75	28061.5	75	29648;26475	y	0.00	124	41604.0	124	45144;38064	y	0.00	115	37394.5	115	41269;33520	y	0.00	94	39642.5	94	42253;37032	y	ENSMUSG00000040564.15	Apoc1	chr7	protein_coding	apolipoprotein C-I
known_NIR_17128	chr7	19431539	19432113	-	19431572	19432113	A3SS	ENSMUST00000174064.9	known	0.06	4354	64129	4354	64129	y	0.06	4461	64647	4461	64647	y	0.06	2645	39749	2645	39749	y	0.06	5321	77957	5321	77957	y	0.07	5043	70698	5043	70698	y	0.00	0	24054	0	24054	n	0.06	4625	70730	4625	70730	y	0.06	1877	29939	1877	29939	y	0.07	5280	75621	5280	75621	y	0.06	7436	109401	7436	109401	y	0.07	5804	83001	5804	83001	y	0.06	6134	94089	6134	94089	y	ENSMUSG00000002985.17	Apoe	chr7	protein_coding	apolipoprotein E
known_NIR_17129	chr7	19432178	19432329	-	19432178	19432897	A5SS	ENSMUST00000174355.8	known	0.89	207	26	207	26	y	0.87	189	28	189	28	y	0.83	104	21	104	21	y	0.90	242	27	242	27	y	0.92	255	22	255	22	y	0.97	63	2	63	2	y	0.86	242	38	242	38	y	0.87	76	11	76	11	y	0.89	247	31	247	31	y	0.89	388	47	388	47	y	0.92	268	22	268	22	y	0.89	294	35	294	35	y	ENSMUSG00000002985.17	Apoe	chr7	protein_coding	apolipoprotein E
known_NIR_17130	chr7	19432178	19432897	-	19432178	19432936	A5SS	ENSMUST00000174064.9	known	0.00	26	33031	26	33031	y	0.00	28	33259	28	33259	y	0.00	21	21240	21	21240	y	0.00	27	40662	27	40662	y	0.00	22	38061	22	38061	y	0.00	2	12683	2	12683	y	0.00	38	37163	38	37163	y	0.00	11	15519	11	15519	y	0.00	31	39630	31	39630	y	0.00	47	56768	47	56768	y	0.00	22	42168	22	42168	y	0.00	35	49305	35	49305	y	ENSMUSG00000002985.17	Apoe	chr7	protein_coding	apolipoprotein E
known_NIR_17131	chr7	19432178;19432398	19432329;19432936	-	19432178	19432936	cassetteExon	ENSMUST00000174064.9	known	0.00	129.0	33031	207;51	33031	y	0.00	115.0	33259	189;41	33259	y	0.00	64.0	21240	104;24	21240	y	0.00	146.0	40662	242;50	40662	y	0.00	154.5	38061	255;54	38061	y	0.00	38.0	12683	63;13	12683	y	0.00	142.0	37163	242;42	37163	y	0.00	45.0	15519	76;14	15519	y	0.00	153.5	39630	247;60	39630	y	0.00	233.5	56768	388;79	56768	y	0.00	161.5	42168	268;55	42168	y	0.00	172.0	49305	294;50	49305	y	ENSMUSG00000002985.17	Apoe	chr7	protein_coding	apolipoprotein E
known_NIR_17132	chr7	19432197	19432936	-	19432178	19432936	A3SS	ENSMUST00000174064.9	known	0.00	4	33031	4	33031	y	0.00	10	33259	10	33259	y	0.00	14	21240	14	21240	y	0.00	7	40662	7	40662	y	0.00	13	38061	13	38061	y	0.00	3	12683	3	12683	y	0.00	10	37163	10	37163	y	0.00	0	15519	0	15519	n	0.00	17	39630	17	39630	y	0.00	14	56768	14	56768	y	0.00	9	42168	9	42168	y	0.00	12	49305	12	49305	y	ENSMUSG00000002985.17	Apoe	chr7	protein_coding	apolipoprotein E
known_NIR_17133	chr7	19432398	19432936	-	19432197	19432936	A3SS	ENSMUST00000003066.16	known	0.93	51	4	51	4	y	0.80	41	10	41	10	y	0.63	24	14	24	14	y	0.88	50	7	50	7	y	0.81	54	13	54	13	y	0.81	13	3	13	3	y	0.81	42	10	42	10	y	1.00	14	0	14	0	n	0.78	60	17	60	17	y	0.85	79	14	79	14	y	0.86	55	9	55	9	y	0.81	50	12	50	12	y	ENSMUSG00000002985.17	Apoe	chr7	protein_coding	apolipoprotein E
known_NIR_17134	chr7	19458794	19463963	-	19455431	19463963	A3SS	ENSMUST00000075447.14	known	0.81	78	18	78	18	y	0.83	97	20	97	20	y	0.78	98	28	98	28	y	0.72	94	36	94	36	y	0.78	140	40	140	40	y	0.78	58	16	58	16	y	0.83	131	27	131	27	y	0.83	53	11	53	11	y	0.90	121	13	121	13	y	0.82	169	37	169	37	y	0.85	146	25	146	25	y	0.73	98	37	98	37	y	ENSMUSG00000062300.15	Nectin2	chr7	protein_coding	nectin cell adhesion molecule 2
known_NIR_17135	chr7	19519324	19522894	-	19519324;19520239	19520108;19522894	ES	ENSMUST00000125050.2	known	0.00	0	49.5	0	41;58	n	0.03	2	73.0	2	62;84	y	0.02	2	84.5	2	85;84	y	0.06	4	66.0	4	53;79	y	0.00	0	76.5	0	84;69	n	0.00	0	60.5	0	63;58	n	0.03	2	70.0	2	67;73	y	0.00	0	55.5	0	52;59	n	0.00	0	70.5	0	62;79	n	0.02	2	102.5	2	101;104	y	0.00	0	89.5	0	75;104	n	0.04	3	73.0	3	68;78	y	ENSMUSG00000040525.14	Cblc	chr7	protein_coding	Casitas B-lineage lymphoma c
known_NIR_17136	chr7	19519324	19522894	-	19520239	19522894	3pMXE	ENSMUST00000145755.2	known	0.00	0	58	0	58	n	0.02	2	84	2	84	y	0.02	2	84	2	84	y	0.05	4	79	4	79	y	0.00	0	69	0	69	n	0.00	0	58	0	58	n	0.03	2	73	2	73	y	0.00	0	59	0	59	n	0.00	0	79	0	79	n	0.02	2	104	2	104	y	0.00	0	104	0	104	n	0.04	3	78	3	78	y	ENSMUSG00000040525.14	Cblc	chr7	protein_coding	Casitas B-lineage lymphoma c
known_NIR_17137	chr7	19526880	19526984	-	19526880	19530358	A5SS	ENSMUST00000108449.9	known	0.09	4	43	4	43	y	0.02	1	46	1	46	n	0.02	1	54	1	54	n	0.00	0	64	0	64	n	0.05	3	59	3	59	y	0.02	1	53	1	53	n	0.02	1	56	1	56	n	0.06	3	44	3	44	y	0.02	1	40	1	40	n	0.01	1	86	1	86	n	0.03	2	62	2	62	y	0.02	1	50	1	50	n	ENSMUSG00000040525.14	Cblc	chr7	protein_coding	Casitas B-lineage lymphoma c
known_NIR_17138	chr7	19542981	19543067	-	19542855	19543067	A3SS	ENSMUST00000135609.8	known	0.94	109	7	109	7	y	0.92	205	18	205	18	y	0.97	447	13	447	13	y	0.94	197	12	197	12	y	0.94	413	26	413	26	y	0.94	172	11	172	11	y	0.96	345	16	345	16	y	0.92	201	17	201	17	y	0.93	196	15	196	15	y	0.95	279	14	279	14	y	0.95	163	8	163	8	y	0.94	214	14	214	14	y	ENSMUSG00000053175.18	Bcl3	chr7	protein_coding	B cell leukemia/lymphoma 3
known_NIR_17139	chr7	19554125	19556000	-	19554125	19556362	A5SS	ENSMUST00000120537.8	known	0.00	0	48	0	48	n	0.00	0	46	0	46	n	0.00	0	190	0	190	n	0.01	1	74	1	74	n	0.02	3	177	3	177	y	0.03	3	96	3	96	y	0.02	2	98	2	98	y	0.00	0	69	0	69	n	0.00	0	67	0	67	n	0.02	3	120	3	120	y	0.00	0	50	0	50	n	0.00	0	80	0	80	n	ENSMUSG00000053175.18	Bcl3	chr7	protein_coding	B cell leukemia/lymphoma 3
known_NIR_17140	chr7	23784931;23786016	23785913;23797246	+	23784931	23797246	cassetteExon	ENSMUST00000068975.6	known	0.04	0.5	11	0;1	11	n	0.36	5.0	9	4;6	9	y	0.14	2.5	15	4;1	15	n	0.17	3.0	15	3;3	15	y	0.06	1.5	22	1;2	22	n	0.17	2.0	10	2;2	10	y	0.22	5.0	18	4;6	18	y	0.18	2.0	9	0;4	9	n	0.26	2.5	7	3;2	7	y	0.05	1.0	19	2;0	19	n	0.00	0.0	6	0;0	6	n	0.09	1.5	15	2;1	15	n	ENSMUSG00000057101.9	Zfp180	chr7	protein_coding	zinc finger protein 180
known_NIR_17141	chr7	23834740	23835634	+	23834740	23836471	A3SS	ENSMUST00000205680.2	known	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.17	2	10	2	10	y	0.14	3	18	3	18	y	0.50	1	1	1	1	n	0.40	6	9	6	9	y	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.33	2	4	2	4	n	0.38	3	5	3	5	n	1.00	9	0	9	0	n	ENSMUSG00000047603.10	Zfp235	chr7	protein_coding	zinc finger protein 235
known_NIR_17142	chr7	23834740	23836471	+	23834740	23835411	3pMXE	ENSMUST00000205736.2	known	0.87	13	2	13	2	y	0.80	4	1	4	1	n	0.86	6	1	6	1	n	1.00	10	0	10	0	n	0.90	18	2	18	2	y	0.50	1	1	1	1	n	0.82	9	2	9	2	y	0.89	8	1	8	1	n	0.67	4	2	4	2	n	0.67	4	2	4	2	n	0.71	5	2	5	2	n	0.00	0	1	0	1	n	ENSMUSG00000047603.10	Zfp235	chr7	protein_coding	zinc finger protein 235
known_NIR_17143	chr7	24008622	24011807	-	24008622;24010928	24010890;24011807	ES	ENSMUST00000108436.8	known	1.00	7	0.0	7	0;0	n	0.40	1	1.5	1	1;2	n	1.00	6	0.0	6	0;0	n	1.00	3	0.0	3	0;0	n	1.00	8	0.0	8	0;0	n	1.00	1	0.0	1	0;0	n	0.89	12	1.5	12	2;1	n	1.00	2	0.0	2	0;0	n	0.94	8	0.5	8	0;1	n	0.78	9	2.5	9	3;2	y	1.00	10	0.0	10	0;0	n	1.00	5	0.0	5	0;0	n	ENSMUSG00000074282.11	Zfp94	chr7	protein_coding	zinc finger protein 94
known_NIR_17144	chr7	24099492	24102817	+	24099316	24102817	A5SS	ENSMUST00000146381.8	known	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.00	0	20	0	20	n	0.17	2	10	2	10	y	0.00	0	19	0	19	n	0.10	1	9	1	9	n	0.11	2	17	2	17	y	0.11	1	8	1	8	n	0.12	1	7	1	7	n	0.14	2	12	2	12	y	0.05	1	18	1	18	n	0.00	0	9	0	9	n	ENSMUSG00000002210.12	Smg9	chr7	protein_coding	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)
known_NIR_17145	chr7	24199483	24200157	+	24199483;24200065	24199901;24200157	ES	ENSMUST00000068023.8	known	0.00	0	57.0	0	49;65	n	0.00	0	60.5	0	45;76	n	0.00	1	227.5	1	207;248	n	0.00	0	70.0	0	67;73	n	0.00	0	154.0	0	137;171	n	0.02	2	95.0	2	83;107	y	0.00	0	87.0	0	83;91	n	0.00	0	100.5	0	88;113	n	0.00	0	33.5	0	28;39	n	0.00	0	53.0	0	60;46	n	0.04	2	50.0	2	50;50	y	0.00	0	32.5	0	23;42	n	ENSMUSG00000054793.9	Cadm4	chr7	protein_coding	cell adhesion molecule 4
known_NIR_17146	chr7	24210178	24214501	+	24210178	24214462	A3SS	ENSMUST00000176880.2	known	0.67	4	2	4	2	n	0.40	2	3	2	3	n	0.61	11	7	11	7	y	0.33	3	6	3	6	n	0.50	3	3	3	3	n	0.60	3	2	3	2	n	0.64	9	5	9	5	y	0.89	8	1	8	1	n	0.89	8	1	8	1	n	0.43	3	4	3	4	n	0.73	8	3	8	3	y	0.75	6	2	6	2	n	ENSMUSG00000064264.15	Zfp428	chr7	protein_coding	zinc finger protein 428
known_NIR_17147	chr7	24270351	24271634	+	24270351;24270576	24270440;24271634	ES	ENSMUST00000205573.2	known	0.00	0	27.0	0	30;24	n	0.03	1	30.5	1	26;35	n	0.02	1	46.5	1	39;54	n	0.00	0	22.5	0	26;19	n	0.02	1	41.0	1	42;40	n	0.00	0	23.0	0	22;24	n	0.03	1	38.5	1	37;40	n	0.00	0	23.5	0	27;20	n	0.00	0	25.0	0	25;25	n	0.00	0	50.0	0	47;53	n	0.00	0	41.5	0	36;47	n	0.04	2	47.5	2	52;43	y	ENSMUSG00000051768.10	Xrcc1	chr7	protein_coding	X-ray repair complementing defective repair in Chinese hamster cells 1
known_NIR_17148	chr7	24584274	24584561	+	24584092	24584561	A5SS	ENSMUST00000108430.10	known	0.00	0	614	0	614	n	0.00	2	532	2	532	y	0.00	0	757	0	757	n	0.00	0	474	0	474	n	0.00	0	741	0	741	n	0.00	0	391	0	391	n	0.00	0	665	0	665	n	0.00	1	365	1	365	n	0.00	1	469	1	469	n	0.00	0	611	0	611	n	0.00	2	628	2	628	y	0.00	0	562	0	562	n	ENSMUSG00000040952.17	Rps19	chr7	protein_coding	ribosomal protein S19
known_NIR_17149	chr7	24584274	24584561	+	24584279	24584561	A5SS	ENSMUST00000153451.9	known	0.00	0	8	0	8	n	0.22	2	7	2	7	n	0.00	0	2	0	2	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.25	1	3	1	3	n	0.08	1	11	1	11	n	0.00	0	23	0	23	n	0.11	2	17	2	17	y	0.00	0	13	0	13	n	ENSMUSG00000040952.17	Rps19	chr7	protein_coding	ribosomal protein S19
known_NIR_17150	chr7	24584274	24584561	+	24584294	24584561	A5SS	ENSMUST00000108429.8	known	0.00	0	18	0	18	n	0.10	2	19	2	19	y	0.00	0	26	0	26	n	0.00	0	26	0	26	n	0.00	0	16	0	16	n	0.00	0	3	0	3	n	0.00	0	17	0	17	n	0.12	1	7	1	7	n	0.05	1	20	1	20	n	0.00	0	47	0	47	n	0.05	2	41	2	41	y	0.00	0	23	0	23	n	ENSMUSG00000040952.17	Rps19	chr7	protein_coding	ribosomal protein S19
known_NIR_17151	chr7	24584279	24584561	+	24584092	24584561	A5SS	ENSMUST00000108430.10	known	0.01	8	614	8	614	y	0.01	7	532	7	532	y	0.00	2	757	2	757	y	0.03	14	474	14	474	y	0.01	9	741	9	741	y	0.01	3	391	3	391	y	0.01	8	665	8	665	y	0.01	3	365	3	365	y	0.02	11	469	11	469	y	0.04	23	611	23	611	y	0.03	17	628	17	628	y	0.02	13	562	13	562	y	ENSMUSG00000040952.17	Rps19	chr7	protein_coding	ribosomal protein S19
known_NIR_17152	chr7	24584294	24584561	+	24584092	24584561	A5SS	ENSMUST00000108430.10	known	0.03	18	614	18	614	y	0.03	19	532	19	532	y	0.03	26	757	26	757	y	0.05	26	474	26	474	y	0.02	16	741	16	741	y	0.01	3	391	3	391	y	0.02	17	665	17	665	y	0.02	7	365	7	365	y	0.04	20	469	20	469	y	0.07	47	611	47	611	y	0.06	41	628	41	628	y	0.04	23	562	23	562	y	ENSMUSG00000040952.17	Rps19	chr7	protein_coding	ribosomal protein S19
known_NIR_17153	chr7	24584294	24584561	+	24584279	24584561	A5SS	ENSMUST00000153451.9	known	0.69	18	8	18	8	y	0.73	19	7	19	7	y	0.93	26	2	26	2	y	0.65	26	14	26	14	y	0.64	16	9	16	9	y	0.50	3	3	3	3	n	0.68	17	8	17	8	y	0.70	7	3	7	3	y	0.65	20	11	20	11	y	0.67	47	23	47	23	y	0.71	41	17	41	17	y	0.64	23	13	23	13	y	ENSMUSG00000040952.17	Rps19	chr7	protein_coding	ribosomal protein S19
known_NIR_17154	chr7	24584977;24585612	24585532;24587707	+	24584977	24587707	cassetteExon	ENSMUST00000108430.10	known	0.01	29.0	2073	34;24	2073	y	0.01	24.5	2299	27;22	2299	y	0.00	4.5	2518	4;5	2518	y	0.02	34.0	1629	36;32	1629	y	0.00	10.5	2348	10;11	2348	y	0.00	5.5	1279	2;9	1279	y	0.01	29.5	2569	32;27	2569	y	0.00	6.5	1344	6;7	1344	y	0.01	17.5	1724	20;15	1724	y	0.01	34.0	2420	30;38	2420	y	0.01	33.5	2250	34;33	2250	y	0.01	19.5	2226	22;17	2226	y	ENSMUSG00000040952.17	Rps19	chr7	protein_coding	ribosomal protein S19
known_NIR_17155	chr7	24602553	24607141	+	24603922	24607141	5pMXE	ENSMUST00000206906.2	known	0.69	18	8	18	8	y	0.43	13	17	13	17	y	0.68	38	18	38	18	y	0.48	15	16	15	16	y	0.51	18	17	18	17	y	0.60	18	12	18	12	y	0.44	19	24	19	24	y	0.69	11	5	11	5	y	0.59	10	7	10	7	y	0.56	20	16	20	16	y	0.42	8	11	8	11	y	0.45	21	26	21	26	y	ENSMUSG00000040940.19	Arhgef1	chr7	protein_coding	Rho guanine nucleotide exchange factor (GEF) 1
known_NIR_17156	chr7	24607359	24611482	+	24607359	24607736	3pMXE	ENSMUST00000127761.8	known	0.00	0	35	0	35	n	0.00	0	29	0	29	n	0.00	0	70	0	70	n	0.00	0	63	0	63	n	0.02	1	59	1	59	n	0.00	0	39	0	39	n	0.02	1	65	1	65	n	0.00	0	31	0	31	n	0.00	0	33	0	33	n	0.03	2	65	2	65	y	0.00	0	36	0	36	n	0.00	0	50	0	50	n	ENSMUSG00000040940.19	Arhgef1	chr7	protein_coding	Rho guanine nucleotide exchange factor (GEF) 1
known_NIR_17157	chr7	24607359	24611482	+	24607359;24607849	24607736;24611482	ES	ENSMUST00000117796.8	known	0.00	0	32.5	0	35;30	n	0.00	0	29.5	0	29;30	n	0.00	0	65.5	0	70;61	n	0.00	0	57.5	0	63;52	n	0.02	1	61.0	1	59;63	n	0.00	0	35.5	0	39;32	n	0.02	1	56.5	1	65;48	n	0.00	0	34.5	0	31;38	n	0.00	0	36.5	0	33;40	n	0.03	2	65.5	2	65;66	y	0.00	0	43.0	0	36;50	n	0.00	0	54.0	0	50;58	n	ENSMUSG00000040940.19	Arhgef1	chr7	protein_coding	Rho guanine nucleotide exchange factor (GEF) 1
known_NIR_17158	chr7	24615478	24616229	+	24615478	24616226	A3SS	ENSMUST00000117796.8	known	0.17	7	35	7	35	y	0.00	0	52	0	52	n	0.09	7	67	7	67	y	0.10	5	45	5	45	y	0.06	6	87	6	87	y	0.21	7	27	7	27	y	0.07	4	56	4	56	y	0.06	2	32	2	32	y	0.27	13	36	13	36	y	0.06	4	62	4	62	y	0.05	3	55	3	55	y	0.11	9	70	9	70	y	ENSMUSG00000040940.19	Arhgef1	chr7	protein_coding	Rho guanine nucleotide exchange factor (GEF) 1
known_NIR_17159	chr7	24617425	24617945	+	24617425	24619056	A3SS	ENSMUST00000047873.16	known	0.04	1	27	1	27	n	0.05	1	20	1	20	n	0.07	3	41	3	41	y	0.00	0	33	0	33	n	0.07	5	65	5	65	y	0.08	2	24	2	24	y	0.02	1	43	1	43	n	0.04	1	27	1	27	n	0.11	3	24	3	24	y	0.02	1	58	1	58	n	0.00	0	33	0	33	n	0.06	3	45	3	45	y	ENSMUSG00000040940.19	Arhgef1	chr7	protein_coding	Rho guanine nucleotide exchange factor (GEF) 1
known_NIR_17160	chr7	24617425	24619056	+	24617425;24618776	24617945;24619056	ES	ENSMUST00000145783.8	known	0.90	27	3.0	27	1;5	n	0.93	20	1.5	20	1;2	n	0.84	41	8.0	41	3;13	y	0.93	33	2.5	33	0;5	n	0.88	65	9.0	65	5;13	y	0.87	24	3.5	24	2;5	y	0.93	43	3.0	43	1;5	n	0.84	27	5.0	27	1;9	n	0.87	24	3.5	24	3;4	y	0.92	58	5.0	58	1;9	n	0.97	33	1.0	33	0;2	n	0.92	45	4.0	45	3;5	y	ENSMUSG00000040940.19	Arhgef1	chr7	protein_coding	Rho guanine nucleotide exchange factor (GEF) 1
known_NIR_17161	chr7	24617425	24619056	+	24617425;24618776	24618609;24619056	ES	ENSMUST00000117796.8	known	0.92	27	2.5	27	0;5	n	0.91	20	2.0	20	2;2	y	0.85	41	7.5	41	2;13	y	0.93	33	2.5	33	0;5	n	0.90	65	7.5	65	2;13	y	0.87	24	3.5	24	2;5	y	0.95	43	2.5	43	0;5	n	0.84	27	5.0	27	1;9	n	0.92	24	2.0	24	0;4	n	0.92	58	5.0	58	1;9	n	0.94	33	2.0	33	2;2	y	0.94	45	3.0	45	1;5	n	ENSMUSG00000040940.19	Arhgef1	chr7	protein_coding	Rho guanine nucleotide exchange factor (GEF) 1
known_NIR_17162	chr7	24617425;24617956	24617945;24618609	+	24617425	24618609	cassetteExon	ENSMUST00000117796.8	known	1.00	0.5	0	1;0	0	n	0.33	1.0	2	1;1	2	n	0.43	1.5	2	3;0	2	n	-	-	-	-	-	-	0.67	4.0	2	5;3	2	y	0.50	2.0	2	2;2	2	n	1.00	1.0	0	1;1	0	n	0.50	1.0	1	1;1	1	n	1.00	3.0	0	3;3	0	n	0.50	1.0	1	1;1	1	n	0.00	0.0	2	0;0	2	n	0.75	3.0	1	3;3	1	n	ENSMUSG00000040940.19	Arhgef1	chr7	protein_coding	Rho guanine nucleotide exchange factor (GEF) 1
known_NIR_17163	chr7	24622866	24623058	+	24622866	24623084	A3SS	ENSMUST00000117796.8	known	0.00	0	67	0	67	n	0.03	2	76	2	76	y	0.04	3	82	3	82	y	0.00	0	58	0	58	n	0.01	1	91	1	91	n	0.00	0	52	0	52	n	0.02	2	79	2	79	y	0.04	2	44	2	44	y	0.02	1	61	1	61	n	0.00	0	92	0	92	n	0.01	1	97	1	97	n	0.00	0	69	0	69	n	ENSMUSG00000040940.19	Arhgef1	chr7	protein_coding	Rho guanine nucleotide exchange factor (GEF) 1
known_NIR_17164	chr7	24669390	24669512	-	24669434	24669512	A3SS	ENSMUST00000076961.9	known	0.02	10	504	10	504	y	0.01	9	607	9	607	y	0.03	16	616	16	616	y	0.02	8	433	8	433	y	0.01	9	623	9	623	y	0.01	5	386	5	386	y	0.01	6	703	6	703	y	0.02	8	374	8	374	y	0.01	6	447	6	447	y	0.01	8	768	8	768	y	0.01	7	626	7	626	y	0.01	9	612	9	612	y	ENSMUSG00000003380.12	Rabac1	chr7	protein_coding	Rab acceptor 1 (prenylated)
known_NIR_17165	chr7	24776907	24778960	+	24776811	24778960	A5SS	ENSMUST00000179556.2	known	0.83	5	1	5	1	n	0.30	3	7	3	7	y	0.43	9	12	9	12	y	0.61	11	7	11	7	y	0.56	14	11	14	11	y	0.38	3	5	3	5	n	0.38	6	10	6	10	y	0.25	2	6	2	6	n	0.46	6	7	6	7	y	0.63	17	10	17	10	y	0.44	4	5	4	5	n	0.24	5	16	5	16	y	ENSMUSG00000045252.12	Zfp574	chr7	protein_coding	zinc finger protein 574
known_NIR_17166	chr7	24982341	24984274	+	24973058	24984274	A5SS	ENSMUST00000169266.8	known	0.32	6	13	6	13	y	0.25	2	6	2	6	n	0.52	14	13	14	13	y	0.48	10	11	10	11	y	0.53	21	19	21	19	y	0.41	7	10	7	10	y	0.50	8	8	8	8	y	0.44	11	14	11	14	y	0.57	8	6	8	6	y	0.54	13	11	13	11	y	0.45	5	6	5	6	y	0.33	8	16	8	16	y	ENSMUSG00000005442.14	Cic	chr7	protein_coding	capicua transcriptional repressor
known_NIR_17167	chr7	24990390	24990477	+	24990390	24990480	A3SS	ENSMUST00000169266.8	known	0.60	21	14	21	14	y	0.56	15	12	15	12	y	0.57	29	22	29	22	y	0.33	9	18	9	18	y	0.53	21	19	21	19	y	0.43	12	16	12	16	y	0.39	16	25	16	25	y	0.51	19	18	19	18	y	0.72	13	5	13	5	y	0.48	23	25	23	25	y	0.50	8	8	8	8	y	0.41	14	20	14	20	y	ENSMUSG00000005442.14	Cic	chr7	protein_coding	capicua transcriptional repressor
known_NIR_17168	chr7	24991739	24991839	+	24991739	24991842	A3SS	ENSMUST00000169266.8	known	0.44	22	28	22	28	y	0.66	21	11	21	11	y	0.62	38	23	38	23	y	0.62	33	20	33	20	y	0.68	43	20	43	20	y	0.64	18	10	18	10	y	0.73	45	17	45	17	y	0.69	27	12	27	12	y	0.58	26	19	26	19	y	0.61	35	22	35	22	y	0.61	23	15	23	15	y	0.74	43	15	43	15	y	ENSMUSG00000005442.14	Cic	chr7	protein_coding	capicua transcriptional repressor
known_NIR_17169	chr7	25083105	25083787	-	25083105	25083798	A5SS	ENSMUST00000003207.11	known	0.00	0	28	0	28	n	0.04	1	27	1	27	n	0.00	0	19	0	19	n	0.05	2	36	2	36	y	0.00	0	38	0	38	n	0.12	2	15	2	15	y	0.00	0	49	0	49	n	0.00	0	29	0	29	n	0.04	1	27	1	27	n	0.02	1	49	1	49	n	0.00	0	38	0	38	n	0.00	0	39	0	39	n	ENSMUSG00000003123.16	Lipe	chr7	protein_coding	lipase, hormone sensitive
known_NIR_17170	chr7	25088078	25089144	-	25088078	25094926	A5SS	ENSMUST00000003207.11	known	0.00	0	26	0	26	n	0.00	0	11	0	11	n	0.10	2	19	2	19	y	0.00	0	35	0	35	n	0.04	1	27	1	27	n	0.00	0	13	0	13	n	0.06	2	34	2	34	y	0.00	0	15	0	15	n	0.00	0	25	0	25	n	0.08	3	33	3	33	y	0.00	0	19	0	19	n	0.00	0	22	0	22	n	ENSMUSG00000003123.16	Lipe	chr7	protein_coding	lipase, hormone sensitive
known_NIR_17171	chr7	25088078	25089487	-	25088078	25094926	A5SS	ENSMUST00000003207.11	known	0.00	0	26	0	26	n	0.00	0	11	0	11	n	0.05	1	19	1	19	n	0.00	0	35	0	35	n	0.10	3	27	3	27	y	0.00	0	13	0	13	n	0.03	1	34	1	34	n	0.00	0	15	0	15	n	0.04	1	25	1	25	n	0.03	1	33	1	33	n	0.00	0	19	0	19	n	0.00	0	22	0	22	n	ENSMUSG00000003123.16	Lipe	chr7	protein_coding	lipase, hormone sensitive
known_NIR_17172	chr7	25164174	25164274	-	25163325	25164274	A3SS	ENSMUST00000098666.9	known	0.03	6	183	6	183	y	0.01	1	158	1	158	n	0.04	7	163	7	163	y	0.00	1	252	1	252	n	0.06	17	290	17	290	y	0.07	11	153	11	153	y	0.06	17	258	17	258	y	0.01	2	143	2	143	y	0.04	7	159	7	159	y	0.02	6	291	6	291	y	0.03	6	188	6	188	y	0.04	9	234	9	234	y	ENSMUSG00000074272.11	Ceacam1	chr7	protein_coding	carcinoembryonic antigen-related cell adhesion molecule 1
known_NIR_17173	chr7	25164305;25164945	25164893;25165742	-	25164305	25165742	cassetteExon	ENSMUST00000098666.9	known	0.12	27.0	193	22;32	193	y	0.14	24.5	147	21;28	147	y	0.25	50.5	148	48;53	148	y	0.14	39.0	242	32;46	242	y	0.13	48.0	311	46;50	311	y	0.21	39.0	145	36;42	145	y	0.15	47.0	265	41;53	265	y	0.17	32.5	164	33;32	164	y	0.14	27.0	170	22;32	170	y	0.11	39.0	322	32;46	322	y	0.15	31.0	172	33;29	172	y	0.17	52.5	262	48;57	262	y	ENSMUSG00000074272.11	Ceacam1	chr7	protein_coding	carcinoembryonic antigen-related cell adhesion molecule 1
known_NIR_17174	chr7	25164305;25164945	25164893;25171223	-	25164305;25165862	25165742;25171223	MXE	ENSMUST00000098666.9	known	0.05	11.0	215.0	22;0	193;237	n	0.06	11.5	167.0	21;2	147;187	y	0.12	24.0	169.0	48;0	148;190	n	0.06	16.5	239.5	32;1	242;237	n	0.06	23.5	347.5	46;1	311;384	n	0.09	19.0	182.5	36;2	145;220	y	0.07	20.5	282.0	41;0	265;299	n	0.08	17.5	202.0	33;2	164;240	y	0.06	11.5	178.5	22;1	170;187	n	0.05	16.0	326.5	32;0	322;331	n	0.08	17.0	183.5	33;1	172;195	n	0.08	24.0	263.5	48;0	262;265	n	ENSMUSG00000074272.11	Ceacam1	chr7	protein_coding	carcinoembryonic antigen-related cell adhesion molecule 1
known_NIR_17175	chr7	25164945	25171223	-	25164945;25165862	25165742;25171223	ES	ENSMUST00000098669.8	known	0.00	0	134.5	0	32;237	n	0.02	2	107.5	2	28;187	y	0.00	0	121.5	0	53;190	n	0.01	1	141.5	1	46;237	n	0.00	1	217.0	1	50;384	n	0.02	2	131.0	2	42;220	y	0.00	0	176.0	0	53;299	n	0.01	2	136.0	2	32;240	y	0.01	1	109.5	1	32;187	n	0.00	0	188.5	0	46;331	n	0.01	1	112.0	1	29;195	n	0.00	0	161.0	0	57;265	n	ENSMUSG00000074272.11	Ceacam1	chr7	protein_coding	carcinoembryonic antigen-related cell adhesion molecule 1
known_NIR_17176	chr7	25164945	25171223	-	25165862	25171223	A3SS	ENSMUST00000206717.2	known	0.00	0	237	0	237	n	0.01	2	187	2	187	y	0.00	0	190	0	190	n	0.00	1	237	1	237	n	0.00	1	384	1	384	n	0.01	2	220	2	220	y	0.00	0	299	0	299	n	0.01	2	240	2	240	y	0.01	1	187	1	187	n	0.00	0	331	0	331	n	0.01	1	195	1	195	n	0.00	0	265	0	265	n	ENSMUSG00000074272.11	Ceacam1	chr7	protein_coding	carcinoembryonic antigen-related cell adhesion molecule 1
known_NIR_17177	chr7	25171498	25173223	-	25171498	25175769	A5SS	ENSMUST00000098668.3	known	0.67	89	44	89	44	y	0.60	51	34	51	34	y	0.80	114	29	114	29	y	0.62	109	67	109	67	y	0.75	171	57	171	57	y	0.87	76	11	76	11	y	0.70	123	52	123	52	y	0.71	92	38	92	38	y	0.67	70	35	70	35	y	0.72	135	52	135	52	y	0.67	88	44	88	44	y	0.62	109	66	109	66	y	ENSMUSG00000074272.11	Ceacam1	chr7	protein_coding	carcinoembryonic antigen-related cell adhesion molecule 1
known_NIR_17178	chr7	25171498	25173945	-	25171498;25173477	25173223;25173945	ES	ENSMUST00000098666.9	known	0.05	5	92.5	5	89;96	y	0.05	3	60.0	3	51;69	y	0.02	3	122.5	3	114;131	y	0.05	6	120.5	6	109;132	y	0.07	13	174.5	13	171;178	y	0.06	6	101.0	6	76;126	y	0.05	7	131.5	7	123;140	y	0.05	7	122.0	7	92;152	y	0.09	8	78.5	8	70;87	y	0.06	9	153.5	9	135;172	y	0.10	9	85.0	9	88;82	y	0.03	5	144.0	5	109;179	y	ENSMUSG00000074272.11	Ceacam1	chr7	protein_coding	carcinoembryonic antigen-related cell adhesion molecule 1
known_NIR_17179	chr7	25171498;25174229	25173945;25175769	-	25171498	25175769	cassetteExon	ENSMUST00000098668.3	known	0.51	45.0	44	5;85	44	y	0.52	37.5	34	3;72	34	y	0.70	68.0	29	3;133	29	y	0.55	81.0	67	6;156	67	y	0.64	101.0	57	13;189	57	y	0.86	65.5	11	6;125	11	y	0.56	67.5	52	7;128	52	y	0.65	71.5	38	7;136	38	y	0.60	52.5	35	8;97	35	y	0.60	78.0	52	9;147	52	y	0.51	46.5	44	9;84	44	y	0.59	94.5	66	5;184	66	y	ENSMUSG00000074272.11	Ceacam1	chr7	protein_coding	carcinoembryonic antigen-related cell adhesion molecule 1
known_NIR_17180	chr7	25319889	25320321	+	25318885	25320321	A5SS	ENSMUST00000077338.12	known	0.36	16	28	16	28	y	0.50	12	12	12	12	y	0.62	15	9	15	9	y	0.40	23	34	23	34	y	0.48	26	28	26	28	y	0.59	13	9	13	9	y	0.18	7	31	7	31	y	0.48	10	11	10	11	y	0.35	11	20	11	20	y	0.51	34	33	34	33	y	0.43	19	25	19	25	y	0.35	15	28	15	28	y	ENSMUSG00000057229.12	Dmac2	chr7	protein_coding	distal membrane arm assembly complex 2
known_NIR_17181	chr7	25320517;25320937	25320849;25321769	+	25320517	25321769	cassetteExon	ENSMUST00000077338.12	known	0.10	9.5	86	15;4	86	y	0.06	5.5	87	7;4	87	y	0.09	4.0	43	3;5	43	y	0.08	9.5	114	14;5	114	y	0.05	6.5	113	8;5	113	y	0.05	1.5	30	3;0	30	n	0.04	4.0	110	5;3	110	y	0.06	4.0	62	8;0	62	n	0.06	5.5	84	8;3	84	y	0.04	5.5	125	7;4	125	y	0.04	5.0	117	8;2	117	y	0.06	8.5	142	15;2	142	y	ENSMUSG00000057229.12	Dmac2	chr7	protein_coding	distal membrane arm assembly complex 2
known_NIR_17182	chr7	25320937	25321398	+	25320937	25321769	A3SS	ENSMUST00000126925.8	known	0.69	9	4	9	4	y	0.67	8	4	8	4	y	0.62	8	5	8	5	y	0.55	6	5	6	5	y	0.55	6	5	6	5	y	1.00	7	0	7	0	n	0.62	5	3	5	3	n	1.00	1	0	1	0	n	0.73	8	3	8	3	y	0.69	9	4	9	4	y	0.60	3	2	3	2	n	0.87	13	2	13	2	y	ENSMUSG00000057229.12	Dmac2	chr7	protein_coding	distal membrane arm assembly complex 2
known_NIR_17183	chr7	25359044	25362562	+	25358808	25362562	A5SS	ENSMUST00000079634.8	known	0.00	0	124	0	124	n	0.00	0	124	0	124	n	0.02	2	112	2	112	y	0.00	0	156	0	156	n	0.00	0	151	0	151	n	0.00	0	54	0	54	n	0.00	0	164	0	164	n	0.00	0	82	0	82	n	0.00	0	115	0	115	n	0.00	0	175	0	175	n	0.01	1	152	1	152	n	0.00	0	143	0	143	n	ENSMUSG00000061286.8	Exosc5	chr7	protein_coding	exosome component 5
known_NIR_17184	chr7	25362675	25363673	+	25362675	25363752	A3SS	ENSMUST00000079634.8	known	0.05	6	109	6	109	y	0.02	3	125	3	125	y	0.01	1	72	1	72	n	0.01	2	139	2	139	y	0.04	5	135	5	135	y	0.00	0	58	0	58	n	0.06	8	130	8	130	y	0.06	4	59	4	59	y	0.06	6	101	6	101	y	0.05	7	146	7	146	y	0.03	5	142	5	142	y	0.02	3	132	3	132	y	ENSMUSG00000061286.8	Exosc5	chr7	protein_coding	exosome component 5
known_NIR_17185	chr7	25414269	25415160	-	25414445	25415160	A3SS	ENSMUST00000002683.3	known	0.07	2	27	2	27	y	0.06	2	33	2	33	y	0.07	4	56	4	56	y	0.09	6	58	6	58	y	0.09	4	40	4	40	y	0.00	0	33	0	33	n	0.06	3	44	3	44	y	0.08	2	22	2	22	y	0.19	5	22	5	22	y	0.00	0	29	0	29	n	0.11	4	33	4	33	y	0.11	5	40	5	40	y	ENSMUSG00000002608.9	Ccdc97	chr7	protein_coding	coiled-coil domain containing 97
known_NIR_17186	chr7	25415612	25418343	-	25415612	25417570	A5SS&ES	ENSMUST00000156365.8	known	0.94	32	2	32	2	y	1.00	34	0	34	0	n	0.95	54	3	54	3	y	1.00	34	0	34	0	n	0.96	43	2	43	2	y	0.91	20	2	20	2	y	0.95	38	2	38	2	y	0.93	26	2	26	2	y	0.97	29	1	29	1	n	1.00	35	0	35	0	n	1.00	22	0	22	0	n	0.91	30	3	30	3	y	ENSMUSG00000002608.9	Ccdc97	chr7	protein_coding	coiled-coil domain containing 97
known_NIR_17187	chr7	25415612;25416424	25416062;25418343	-	25415612	25418343	cassetteExon	ENSMUST00000002683.3	known	0.06	2.0	32	0;4	32	n	0.09	3.5	34	0;7	34	n	0.04	2.5	54	0;5	54	n	0.04	1.5	34	0;3	34	n	0.05	2.5	43	2;3	43	y	0.07	1.5	20	0;3	20	n	0.15	6.5	38	0;13	38	n	0.04	1.0	26	0;2	26	n	0.06	2.0	29	0;4	29	n	0.08	3.0	35	0;6	35	n	0.12	3.0	22	0;6	22	n	0.06	2.0	30	0;4	30	n	ENSMUSG00000002608.9	Ccdc97	chr7	protein_coding	coiled-coil domain containing 97
known_NIR_17188	chr7	25415612;25416424	25416279;25417570	-	25415612	25417570	cassetteExon	ENSMUST00000156365.8	known	0.71	5.0	2	7;3	2	y	1.00	3.5	0	6;1	0	n	0.54	3.5	3	5;2	3	y	1.00	2.0	0	3;1	0	n	0.60	3.0	2	6;0	2	n	0.64	3.5	2	7;0	2	n	0.60	3.0	2	6;0	2	n	0.33	1.0	2	2;0	2	n	0.83	5.0	1	10;0	1	n	1.00	4.0	0	7;1	0	n	1.00	4.5	0	8;1	0	n	0.60	4.5	3	8;1	3	n	ENSMUSG00000002608.9	Ccdc97	chr7	protein_coding	coiled-coil domain containing 97
known_NIR_17189	chr7	25415612;25416424	25416279;25418343	-	25415612	25418343	cassetteExon	ENSMUST00000002683.3	known	0.15	5.5	32	7;4	32	y	0.16	6.5	34	6;7	34	y	0.08	5.0	54	5;5	54	y	0.08	3.0	34	3;3	34	y	0.09	4.5	43	6;3	43	y	0.20	5.0	20	7;3	20	y	0.20	9.5	38	6;13	38	y	0.07	2.0	26	2;2	26	y	0.19	7.0	29	10;4	29	y	0.16	6.5	35	7;6	35	y	0.24	7.0	22	8;6	22	y	0.17	6.0	30	8;4	30	y	ENSMUSG00000002608.9	Ccdc97	chr7	protein_coding	coiled-coil domain containing 97
known_NIR_17190	chr7	25415612;25417704	25417570;25418343	-	25415612	25418343	cassetteExon	ENSMUST00000002683.3	known	0.10	3.5	32	2;5	32	y	0.06	2.0	34	0;4	34	n	0.08	5.0	54	3;7	54	y	0.03	1.0	34	0;2	34	n	0.03	1.5	43	2;1	43	n	0.11	2.5	20	2;3	20	y	0.03	1.0	38	2;0	38	n	0.04	1.0	26	2;0	26	n	0.03	1.0	29	1;1	29	n	0.00	0.0	35	0;0	35	n	0.02	0.5	22	0;1	22	n	0.13	4.5	30	3;6	30	y	ENSMUSG00000002608.9	Ccdc97	chr7	protein_coding	coiled-coil domain containing 97
known_NIR_17191	chr7	25415612;25417704	25417570;25418343	-	25415612;25416424	25416279;25418343	MXE	ENSMUST00000125699.3	known	0.39	3.5	5.5	2;5	7;4	y	0.24	2.0	6.5	0;4	6;7	n	0.50	5.0	5.0	3;7	5;5	y	0.25	1.0	3.0	0;2	3;3	n	0.25	1.5	4.5	2;1	6;3	n	0.33	2.5	5.0	2;3	7;3	y	0.10	1.0	9.5	2;0	6;13	n	0.33	1.0	2.0	2;0	2;2	n	0.12	1.0	7.0	1;1	10;4	n	0.00	0.0	6.5	0;0	7;6	n	0.07	0.5	7.0	0;1	8;6	n	0.43	4.5	6.0	3;6	8;4	y	ENSMUSG00000002608.9	Ccdc97	chr7	protein_coding	coiled-coil domain containing 97
known_NIR_17192	chr7	25416424;25417704	25417570;25418343	-	25416424	25418343	cassetteExon	ENSMUST00000125699.3	known	0.50	4.0	4	3;5	4	y	0.26	2.5	7	1;4	7	n	0.47	4.5	5	2;7	5	y	0.33	1.5	3	1;2	3	n	0.14	0.5	3	0;1	3	n	0.33	1.5	3	0;3	3	n	0.00	0.0	13	0;0	13	n	0.00	0.0	2	0;0	2	n	0.11	0.5	4	0;1	4	n	0.08	0.5	6	1;0	6	n	0.14	1.0	6	1;1	6	n	0.47	3.5	4	1;6	4	n	ENSMUSG00000002608.9	Ccdc97	chr7	protein_coding	coiled-coil domain containing 97
known_NIR_17193	chr7	25436186	25440253	-	25434250	25440253	A3SS	ENSMUST00000206832.2	known	0.02	2	90	2	90	y	0.02	2	79	2	79	y	0.01	1	130	1	130	n	0.00	0	98	0	98	n	0.01	1	129	1	129	n	0.00	0	61	0	61	n	0.03	4	119	4	119	y	0.00	0	65	0	65	n	0.01	1	82	1	82	n	0.01	1	102	1	102	n	0.04	3	78	3	78	y	0.00	0	96	0	96	n	ENSMUSG00000040725.14	Hnrnpul1	chr7	protein_coding	heterogeneous nuclear ribonucleoprotein U-like 1
known_NIR_17194	chr7	25450415	25453872	-	25450415	25453766	A5SS	ENSMUST00000206832.2	known	0.27	17	45	17	45	y	0.15	6	33	6	33	y	0.15	16	90	16	90	y	0.15	15	83	15	83	y	0.10	11	99	11	99	y	0.11	6	47	6	47	y	0.12	9	64	9	64	y	0.03	2	64	2	64	y	0.14	9	54	9	54	y	0.14	13	80	13	80	y	0.11	7	56	7	56	y	0.08	7	81	7	81	y	ENSMUSG00000040725.14	Hnrnpul1	chr7	protein_coding	heterogeneous nuclear ribonucleoprotein U-like 1
known_NIR_17195	chr7	25470190	25472768	-	25470190;25472550	25472524;25472768	ES	ENSMUST00000002677.11	known	0.08	1	11.5	1	11;12	n	0.00	0	7.5	0	8;7	n	0.00	0	10.0	0	11;9	n	0.00	0	8.5	0	10;7	n	0.29	5	12.0	5	11;13	y	0.00	0	3.5	0	3;4	n	0.16	2	10.5	2	12;9	y	0.00	0	3.5	0	4;3	n	0.00	0	8.0	0	8;8	n	0.33	4	8.0	4	10;6	y	0.20	1	4.0	1	5;3	n	0.17	1	5.0	1	6;4	n	ENSMUSG00000002602.17	Axl	chr7	protein_coding	AXL receptor tyrosine kinase
known_NIR_17196	chr7	26824428	26824624	+	26824428	26828616	A3SS	ENSMUST00000003100.10	known	0.01	13	1509	13	1509	y	0.01	7	1033	7	1033	y	0.00	0	128	0	128	n	0.00	11	2659	11	2659	y	0.01	6	1020	6	1020	y	0.01	1	104	1	104	n	0.01	6	844	6	844	y	0.01	1	191	1	191	n	0.00	5	2105	5	2105	y	0.01	15	2461	15	2461	y	0.00	9	2558	9	2558	y	0.01	16	2700	16	2700	y	ENSMUSG00000052974.9	Cyp2f2	chr7	protein_coding	cytochrome P450, family 2, subfamily f, polypeptide 2
known_NIR_17197	chr7	26828776	26829719	+	26828776;26829318	26829142;26829719	ES	ENSMUST00000003100.10	known	0.00	6	1320.0	6	1192;1448	y	0.01	7	979.0	7	797;1161	y	0.00	0	149.0	0	132;166	n	0.01	12	2317.5	12	2046;2589	y	0.00	2	897.5	2	809;986	y	0.02	2	100.0	2	90;110	y	0.01	5	777.0	5	652;902	y	0.01	1	154.5	1	139;170	n	0.01	12	1758.5	12	1517;2000	y	0.01	15	2207.5	15	1938;2477	y	0.00	7	2336.0	7	2156;2516	y	0.00	8	2345.5	8	2064;2627	y	ENSMUSG00000052974.9	Cyp2f2	chr7	protein_coding	cytochrome P450, family 2, subfamily f, polypeptide 2
known_NIR_17198	chr7	26865153	26865449	-	26865153	26865741	A5SS	ENSMUST00000108382.2	known	0.22	2	7	2	7	n	0.25	3	9	3	9	y	0.31	4	9	4	9	y	0.30	6	14	6	14	y	0.00	0	16	0	16	n	0.21	3	11	3	11	y	0.11	2	17	2	17	y	0.21	3	11	3	11	y	0.60	6	4	6	4	y	0.18	4	18	4	18	y	0.44	7	9	7	9	y	0.21	5	19	5	19	y	ENSMUSG00000058709.12	Egln2	chr7	protein_coding	egl-9 family hypoxia-inducible factor 2
known_NIR_17199	chr7	26865153	26865449	-	26865153	26866109	A5SS	ENSMUST00000080058.11	known	0.05	2	40	2	40	y	0.08	3	35	3	35	y	0.07	4	52	4	52	y	0.09	6	61	6	61	y	0.00	0	67	0	67	n	0.06	3	47	3	47	y	0.03	2	77	2	77	y	0.09	3	32	3	32	y	0.14	6	38	6	38	y	0.06	4	68	4	68	y	0.16	7	38	7	38	y	0.07	5	63	5	63	y	ENSMUSG00000058709.12	Egln2	chr7	protein_coding	egl-9 family hypoxia-inducible factor 2
known_NIR_17200	chr7	26865153	26865741	-	26865153	26866109	A5SS	ENSMUST00000080058.11	known	0.15	7	40	7	40	y	0.20	9	35	9	35	y	0.15	9	52	9	52	y	0.19	14	61	14	61	y	0.19	16	67	16	67	y	0.19	11	47	11	47	y	0.18	17	77	17	77	y	0.26	11	32	11	32	y	0.10	4	38	4	38	y	0.21	18	68	18	68	y	0.19	9	38	9	38	y	0.23	19	63	19	63	y	ENSMUSG00000058709.12	Egln2	chr7	protein_coding	egl-9 family hypoxia-inducible factor 2
known_NIR_17201	chr7	26872466	26873847	-	26872384	26873847	A3SS	ENSMUST00000093040.13	known	0.00	0	120	0	120	n	0.00	0	120	0	120	n	0.02	2	119	2	119	y	0.01	1	85	1	85	n	0.02	4	190	4	190	y	0.02	1	65	1	65	n	0.01	1	144	1	144	n	0.01	1	79	1	79	n	0.00	0	86	0	86	n	0.01	1	138	1	138	n	0.01	1	98	1	98	n	0.00	0	123	0	123	n	ENSMUSG00000053291.16	Rab4b	chr7	protein_coding	RAB4B, member RAS oncogene family
known_NIR_17202	chr7	26874265	26875204	-	26874203	26875204	A3SS	ENSMUST00000093040.13	known	0.03	3	90	3	90	y	0.03	3	86	3	86	y	0.02	2	92	2	92	y	0.01	1	84	1	84	n	0.02	3	131	3	131	y	0.01	1	69	1	69	n	0.02	2	96	2	96	y	0.05	4	70	4	70	y	0.01	1	68	1	68	n	0.04	3	81	3	81	y	0.00	0	83	0	83	n	0.00	0	72	0	72	n	ENSMUSG00000053291.16	Rab4b	chr7	protein_coding	RAB4B, member RAS oncogene family
known_NIR_17203	chr7	26875663	26879594	-	26875663	26878152	5pMXE	ENSMUST00000093040.13	known	0.03	3	92	3	92	y	0.01	1	73	1	73	n	0.00	0	84	0	84	n	0.02	2	83	2	83	y	0.02	3	119	3	119	y	0.00	0	42	0	42	n	0.00	0	86	0	86	n	0.00	0	62	0	62	n	0.05	3	58	3	58	y	0.02	2	104	2	104	y	0.03	2	58	2	58	y	0.03	2	76	2	76	y	ENSMUSG00000053291.16	Rab4b	chr7	protein_coding	RAB4B, member RAS oncogene family
known_NIR_17204	chr7	26894981	26895416	-	26894981	26895419	A5SS	ENSMUST00000122202.8	known	0.60	68	45	68	45	y	0.72	74	29	74	29	y	0.65	39	21	39	21	y	0.76	81	26	81	26	y	0.69	74	34	74	34	y	0.66	42	22	42	22	y	0.65	71	38	71	38	y	0.78	50	14	50	14	y	0.65	66	36	66	36	y	0.78	69	20	69	20	y	0.69	75	33	75	33	y	0.75	77	26	77	26	y	ENSMUSG00000061479.16	Snrpa	chr7	protein_coding	small nuclear ribonucleoprotein polypeptide A
known_NIR_17205	chr7	26902122	26903336	+	26902122	26903181	A3SS	ENSMUST00000179391.8	known	0.13	2	13	2	13	y	0.28	8	21	8	21	y	0.21	10	38	10	38	y	0.14	3	19	3	19	y	0.30	14	33	14	33	y	0.03	1	29	1	29	n	0.05	2	35	2	35	y	0.10	3	27	3	27	y	0.25	4	12	4	12	y	0.20	6	24	6	24	y	0.07	2	26	2	26	y	0.32	8	17	8	17	y	ENSMUSG00000078786.10	BC024978	chr7	protein_coding	cDNA sequence BC024978
known_NIR_17206	chr7	26942821	26942994	+	26942821	26949712	A3SS	ENSMUST00000003860.13	known	0.00	0	46	0	46	n	0.00	0	30	0	30	n	0.00	0	238	0	238	n	0.00	0	46	0	46	n	0.03	2	63	2	63	y	0.02	2	110	2	110	y	0.04	3	74	3	74	y	0.00	0	53	0	53	n	0.00	0	34	0	34	n	0.00	0	47	0	47	n	0.00	0	46	0	46	n	0.03	2	69	2	69	y	ENSMUSG00000003762.14	Coq8b	chr7	protein_coding	coenzyme Q8B
known_NIR_17207	chr7	26942821	26949961	+	26942821;26949853	26949712;26949961	ES	ENSMUST00000003860.13	known	0.02	1	43.5	1	46;41	n	0.03	1	34.0	1	30;38	n	0.01	3	239.5	3	238;241	y	0.02	1	48.5	1	46;51	n	0.03	2	55.5	2	63;48	y	0.00	0	127.5	0	110;145	n	0.00	0	73.5	0	74;73	n	0.00	0	54.5	0	53;56	n	0.06	2	33.0	2	34;32	y	0.00	0	49.5	0	47;52	n	0.00	0	45.5	0	46;45	n	0.02	1	62.5	1	69;56	n	ENSMUSG00000003762.14	Coq8b	chr7	protein_coding	coenzyme Q8B
known_NIR_17208	chr7	26942821	26949961	+	26949853	26949961	5pMXE	ENSMUST00000142910.8	known	0.02	1	41	1	41	n	0.03	1	38	1	38	n	0.01	3	241	3	241	y	0.02	1	51	1	51	n	0.04	2	48	2	48	y	0.00	0	145	0	145	n	0.00	0	73	0	73	n	0.00	0	56	0	56	n	0.06	2	32	2	32	y	0.00	0	52	0	52	n	0.00	0	45	0	45	n	0.02	1	56	1	56	n	ENSMUSG00000003762.14	Coq8b	chr7	protein_coding	coenzyme Q8B
known_NIR_17209	chr7	26950068;26951067	26950855;26951686	+	26950068	26951686	cassetteExon	ENSMUST00000003860.13	known	0.00	0.0	48	0;0	48	n	0.00	0.0	56	0;0	56	n	0.02	4.5	270	5;4	270	y	0.00	0.0	61	0;0	61	n	0.02	1.0	58	2;0	58	n	0.01	1.0	135	2;0	135	n	0.00	0.0	76	0;0	76	n	0.01	0.5	55	0;1	55	n	0.00	0.0	50	0;0	50	n	0.00	0.0	49	0;0	49	n	0.01	0.5	58	0;1	58	n	0.00	0.0	83	0;0	83	n	ENSMUSG00000003762.14	Coq8b	chr7	protein_coding	coenzyme Q8B
known_NIR_17210	chr7	27011237	27013662	-	27010212	27013662	A3SS	ENSMUST00000038618.13	known	0.00	0	14	0	14	n	0.07	2	26	2	26	y	0.05	1	21	1	21	n	0.00	0	17	0	17	n	0.00	0	31	0	31	n	0.00	0	6	0	6	n	0.00	0	32	0	32	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.00	0	34	0	34	n	0.00	0	21	0	21	n	0.00	0	30	0	30	n	ENSMUSG00000040488.19	Ltbp4	chr7	protein_coding	latent transforming growth factor beta binding protein 4
known_NIR_17211	chr7	27042182	27042668	-	27042185	27042668	A3SS	ENSMUST00000003857.7	known	0.15	3	17	3	17	y	0.00	0	16	0	16	n	0.14	3	18	3	18	y	0.00	0	21	0	21	n	0.17	4	19	4	19	y	0.00	0	13	0	13	n	0.00	0	19	0	19	n	0.08	1	12	1	12	n	0.12	3	21	3	21	y	0.03	1	31	1	31	n	0.07	3	37	3	37	y	0.06	1	16	1	16	n	ENSMUSG00000089832.9	Shkbp1	chr7	protein_coding	Sh3kbp1 binding protein 1
known_NIR_17212	chr7	27151975	27158681	+	27147621	27158681	A5SS	ENSMUST00000037399.16	known	0.17	90	432	90	432	y	0.22	112	400	112	400	y	0.37	315	535	315	535	y	0.20	112	450	112	450	y	0.27	184	508	184	508	y	0.41	171	245	171	245	y	0.30	226	520	226	520	y	0.41	167	237	167	237	y	0.20	95	384	95	384	y	0.20	156	632	156	632	y	0.16	101	547	101	547	y	0.14	66	408	66	408	y	ENSMUSG00000040466.17	Blvrb	chr7	protein_coding	biliverdin reductase B (flavin reductase (NADPH))
known_NIR_17213	chr7	27159058	27161992	+	27159077	27161992	A5SS	ENSMUST00000037399.16	known	0.01	5	607	5	607	y	0.00	2	633	2	633	y	0.01	10	899	10	899	y	0.01	7	495	7	495	y	0.02	13	836	13	836	y	0.00	2	567	2	567	y	0.01	11	928	11	928	y	0.00	1	594	1	594	n	0.01	3	536	3	536	y	0.00	3	1012	3	1012	y	0.01	7	863	7	863	y	0.01	6	569	6	569	y	ENSMUSG00000040466.17	Blvrb	chr7	protein_coding	biliverdin reductase B (flavin reductase (NADPH))
known_NIR_17214	chr7	27186910	27188678	+	27186503	27188678	A5SS	ENSMUST00000008528.8	known	0.03	1	28	1	28	n	0.00	0	26	0	26	n	0.00	0	65	0	65	n	0.07	2	25	2	25	y	0.08	4	46	4	46	y	0.00	0	15	0	15	n	0.06	2	31	2	31	y	0.11	1	8	1	8	n	0.00	0	27	0	27	n	0.04	2	47	2	47	y	0.00	0	26	0	26	n	0.12	3	21	3	21	y	ENSMUSG00000008384.9	Sertad1	chr7	protein_coding	SERTA domain containing 1
known_NIR_17215	chr7	27242329	27252423	-	27242329;27244687	27244613;27252423	ES	ENSMUST00000117095.8	known	0.05	1	20.5	1	32;9	n	0.00	0	9.5	0	13;6	n	0.00	0	15.5	0	19;12	n	0.14	3	18.0	3	26;10	y	0.07	2	28.0	2	37;19	y	0.00	0	5.5	0	7;4	n	0.07	2	26.0	2	38;14	y	0.13	2	13.5	2	21;6	y	0.05	1	19.0	1	23;15	n	0.00	0	26.0	0	31;21	n	0.08	2	24.0	2	31;17	y	0.00	0	17.5	0	25;10	n	ENSMUSG00000003363.16	Pld3	chr7	protein_coding	phospholipase D family, member 3
known_NIR_17216	chr7	27242329;27244710	27244613;27252423	-	27242329	27252423	cassetteExon	ENSMUST00000127240.8	known	0.94	17.0	1	32;2	1	n	1.00	6.5	0	13;0	0	n	1.00	10.5	0	19;2	0	n	0.83	15.0	3	26;4	3	y	0.91	19.5	2	37;2	2	y	1.00	3.5	0	7;0	0	n	0.91	20.0	2	38;2	2	y	0.85	11.5	2	21;2	2	y	0.93	13.0	1	23;3	1	n	1.00	16.0	0	31;1	0	n	0.89	15.5	2	31;0	2	n	1.00	13.0	0	25;1	0	n	ENSMUSG00000003363.16	Pld3	chr7	protein_coding	phospholipase D family, member 3
known_NIR_17217	chr7	27244710	27252423	-	27244687	27252423	A3SS	ENSMUST00000117095.8	known	0.18	2	9	2	9	y	0.00	0	6	0	6	n	0.14	2	12	2	12	y	0.29	4	10	4	10	y	0.10	2	19	2	19	y	0.00	0	4	0	4	n	0.12	2	14	2	14	y	0.25	2	6	2	6	n	0.17	3	15	3	15	y	0.05	1	21	1	21	n	0.00	0	17	0	17	n	0.09	1	10	1	10	n	ENSMUSG00000003363.16	Pld3	chr7	protein_coding	phospholipase D family, member 3
known_NIR_17218	chr7	27252778	27253155	+	27252778	27255839	A3SS	ENSMUST00000067386.14	known	0.00	0	10	0	10	n	0.50	1	1	1	1	n	0.08	1	12	1	12	n	0.00	0	4	0	4	n	0.40	2	3	2	3	n	0.00	0	5	0	5	n	0.25	2	6	2	6	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.43	3	4	3	4	n	0.00	0	7	0	7	n	0.30	3	7	3	7	y	ENSMUSG00000049643.16	2310022A10Rik	chr7	protein_coding	RIKEN cDNA 2310022A10 gene
known_NIR_17219	chr7	27271173	27274016	+	27271126	27274016	A5SS	ENSMUST00000067386.14	known	0.00	0	21	0	21	n	0.11	1	8	1	8	n	0.18	2	9	2	9	y	0.00	0	11	0	11	n	0.00	0	17	0	17	n	0.00	0	13	0	13	n	0.00	0	19	0	19	n	0.00	0	5	0	5	n	0.12	1	7	1	7	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.00	0	15	0	15	n	ENSMUSG00000049643.16	2310022A10Rik	chr7	protein_coding	RIKEN cDNA 2310022A10 gene
known_NIR_17220	chr7	27292254	27308048	+	27291304	27308048	A5SS	ENSMUST00000108344.9	known	0.15	13	74	13	74	y	0.07	6	85	6	85	y	0.04	6	144	6	144	y	0.10	12	114	12	114	y	0.05	8	143	8	143	y	0.07	6	86	6	86	y	0.10	13	123	13	123	y	0.14	13	82	13	82	y	0.11	10	77	10	77	y	0.06	8	127	8	127	y	0.17	16	76	16	76	y	0.07	10	137	10	137	y	ENSMUSG00000004056.16	Akt2	chr7	protein_coding	thymoma viral proto-oncogene 2
known_NIR_17221	chr7	27305362	27308048	+	27291304	27308048	A5SS	ENSMUST00000108344.9	known	0.03	2	74	2	74	y	0.02	2	85	2	85	y	0.01	1	144	1	144	n	0.00	0	114	0	114	n	0.02	3	143	3	143	y	0.00	0	86	0	86	n	0.01	1	123	1	123	n	0.02	2	82	2	82	y	0.07	6	77	6	77	y	0.04	5	127	5	127	y	0.00	0	76	0	76	n	0.01	2	137	2	137	y	ENSMUSG00000004056.16	Akt2	chr7	protein_coding	thymoma viral proto-oncogene 2
known_NIR_17222	chr7	27305362	27308048	+	27292254	27308048	A5SS	ENSMUST00000108342.8	known	0.13	2	13	2	13	y	0.25	2	6	2	6	n	0.14	1	6	1	6	n	0.00	0	12	0	12	n	0.27	3	8	3	8	y	0.00	0	6	0	6	n	0.07	1	13	1	13	n	0.13	2	13	2	13	y	0.38	6	10	6	10	y	0.38	5	8	5	8	y	0.00	0	16	0	16	n	0.17	2	10	2	10	y	ENSMUSG00000004056.16	Akt2	chr7	protein_coding	thymoma viral proto-oncogene 2
known_NIR_17223	chr7	27305362;27306830	27306668;27308048	+	27305362	27308048	cassetteExon	ENSMUST00000143499.8	known	0.33	1.0	2	0;2	2	n	0.33	1.0	2	0;2	2	n	0.60	1.5	1	0;3	1	n	1.00	2.0	0	2;2	0	n	0.57	4.0	3	2;6	3	y	1.00	0.5	0	0;1	0	n	0.75	3.0	1	2;4	1	n	0.50	2.0	2	1;3	2	n	0.00	0.0	6	0;0	6	n	0.17	1.0	5	0;2	5	n	1.00	2.5	0	0;5	0	n	0.43	1.5	2	0;3	2	n	ENSMUSG00000004056.16	Akt2	chr7	protein_coding	thymoma viral proto-oncogene 2
known_NIR_17224	chr7	27306830	27308048	+	27291304	27308048	A5SS	ENSMUST00000108344.9	known	0.03	2	74	2	74	y	0.02	2	85	2	85	y	0.02	3	144	3	144	y	0.02	2	114	2	114	y	0.04	6	143	6	143	y	0.01	1	86	1	86	n	0.03	4	123	4	123	y	0.04	3	82	3	82	y	0.00	0	77	0	77	n	0.02	2	127	2	127	y	0.06	5	76	5	76	y	0.02	3	137	3	137	y	ENSMUSG00000004056.16	Akt2	chr7	protein_coding	thymoma viral proto-oncogene 2
known_NIR_17225	chr7	27306830	27308048	+	27292254	27308048	A5SS	ENSMUST00000108342.8	known	0.13	2	13	2	13	y	0.25	2	6	2	6	n	0.33	3	6	3	6	n	0.14	2	12	2	12	y	0.43	6	8	6	8	y	0.14	1	6	1	6	n	0.24	4	13	4	13	y	0.19	3	13	3	13	y	0.00	0	10	0	10	n	0.20	2	8	2	8	y	0.24	5	16	5	16	y	0.23	3	10	3	10	y	ENSMUSG00000004056.16	Akt2	chr7	protein_coding	thymoma viral proto-oncogene 2
known_NIR_17226	chr7	27308178	27317633	+	27308178;27315794	27315666;27317633	ES	ENSMUST00000108344.9	known	0.00	0	165.5	0	143;188	n	0.04	6	148.0	6	137;159	y	0.01	3	226.5	3	192;261	y	0.02	5	219.0	5	207;231	y	0.01	2	249.0	2	217;281	y	0.01	1	144.0	1	140;148	n	0.00	1	252.0	1	239;265	n	0.00	0	129.5	0	112;147	n	0.02	3	163.0	3	134;192	y	0.01	2	273.0	2	239;307	y	0.00	0	179.5	0	163;196	n	0.00	0	238.0	0	223;253	n	ENSMUSG00000004056.16	Akt2	chr7	protein_coding	thymoma viral proto-oncogene 2
known_NIR_17227	chr7	27328415	27328760	+	27328415	27328721	A3SS	ENSMUST00000108344.9	known	0.00	0	177	0	177	n	0.02	4	185	4	185	y	0.00	0	278	0	278	n	0.02	5	238	5	238	y	0.00	0	325	0	325	n	0.00	0	179	0	179	n	0.03	9	284	9	284	y	0.00	0	183	0	183	n	0.02	3	167	3	167	y	0.00	0	280	0	280	n	0.00	0	187	0	187	n	0.03	9	304	9	304	y	ENSMUSG00000004056.16	Akt2	chr7	protein_coding	thymoma viral proto-oncogene 2
known_NIR_17228	chr7	27363998	27367774	-	27363998	27364375	5pMXE	ENSMUST00000152032.2	known	0.47	7	8	7	8	y	0.35	6	11	6	11	y	0.30	3	7	3	7	y	0.14	2	12	2	12	y	0.45	5	6	5	6	y	0.12	2	15	2	15	y	0.16	4	21	4	21	y	0.16	3	16	3	16	y	0.25	2	6	2	6	n	0.38	6	10	6	10	y	0.57	8	6	8	6	y	0.18	2	9	2	9	y	ENSMUSG00000040390.14	Map3k10	chr7	protein_coding	mitogen-activated protein kinase kinase kinase 10
known_NIR_17229	chr7	27363998	27367774	-	27363998;27364523	27364375;27367774	ES	ENSMUST00000036453.14	known	0.36	7	12.5	7	8;17	y	0.44	6	7.5	6	11;4	y	0.22	3	10.5	3	7;14	y	0.20	2	8.0	2	12;4	y	0.34	5	9.5	5	6;13	y	0.12	2	14.0	2	15;13	y	0.16	4	20.5	4	21;20	y	0.21	3	11.5	3	16;7	y	0.24	2	6.5	2	6;7	y	0.39	6	9.5	6	10;9	y	0.55	8	6.5	8	6;7	y	0.24	2	6.5	2	9;4	y	ENSMUSG00000040390.14	Map3k10	chr7	protein_coding	mitogen-activated protein kinase kinase kinase 10
known_NIR_17230	chr7	27674230	27676165	-	27674230	27676177	A5SS	ENSMUST00000205874.2	known	0.60	6	4	6	4	y	0.53	8	7	8	7	y	0.12	1	7	1	7	n	0.20	2	8	2	8	y	0.86	6	1	6	1	n	0.57	4	3	4	3	n	0.50	2	2	2	2	n	0.50	3	3	3	3	n	0.00	0	4	0	4	n	0.50	5	5	5	5	y	0.25	1	3	1	3	n	0.25	5	15	5	15	y	ENSMUSG00000063047.10	Zfp780b	chr7	protein_coding	zinc finger protein 780B
known_NIR_17231	chr7	27749125	27749408	-	27748627	27749408	A3SS	ENSMUST00000032824.10	known	0.01	4	297	4	297	y	0.00	0	246	0	246	n	0.00	1	369	1	369	n	0.00	1	327	1	327	n	0.00	0	330	0	330	n	0.00	0	181	0	181	n	0.00	0	344	0	344	n	0.00	0	161	0	161	n	0.00	1	224	1	224	n	0.00	0	330	0	330	n	0.00	0	247	0	247	n	0.00	0	278	0	278	n	ENSMUSG00000030603.17	Psmc4	chr7	protein_coding	proteasome (prosome, macropain) 26S subunit, ATPase, 4
known_NIR_17232	chr7	27874051	27874409	+	27874317	27874409	A5SS&ES	ENSMUST00000042405.8	known	0.00	0	119	0	119	n	0.00	0	130	0	130	n	0.00	0	133	0	133	n	0.00	0	162	0	162	n	0.00	0	174	0	174	n	0.00	0	67	0	67	n	0.00	0	189	0	189	n	0.00	0	69	0	69	n	0.00	0	94	0	94	n	0.01	2	194	2	194	y	0.00	0	143	0	143	n	0.00	0	185	0	185	n	ENSMUSG00000046865.8	Fbl	chr7	protein_coding	fibrillarin
known_NIR_17233	chr7	27879851	27880934	+	27879065	27880934	A5SS	ENSMUST00000085901.13	known	0.33	2	4	2	4	n	0.30	3	7	3	7	y	0.15	3	17	3	17	y	0.22	2	7	2	7	n	0.19	5	21	5	21	y	0.36	4	7	4	7	y	0.00	0	20	0	20	n	0.36	5	9	5	9	y	0.00	0	12	0	12	n	0.12	4	29	4	29	y	0.06	1	16	1	16	n	0.23	6	20	6	20	y	ENSMUSG00000002409.19	Dyrk1b	chr7	protein_coding	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b
known_NIR_17234	chr7	27884861	27885259	+	27884861	27885139	A3SS	ENSMUST00000085901.13	known	0.38	6	10	6	10	y	0.39	7	11	7	11	y	0.47	8	9	8	9	y	0.36	5	9	5	9	y	0.50	17	17	17	17	y	0.50	10	10	10	10	y	0.31	14	31	14	31	y	0.30	3	7	3	7	y	0.40	10	15	10	15	y	0.67	20	10	20	10	y	0.52	14	13	14	13	y	0.26	10	29	10	29	y	ENSMUSG00000002409.19	Dyrk1b	chr7	protein_coding	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b
known_NIR_17235	chr7	28023407;28025209	28025143;28025375	-	28023407	28025375	cassetteExon	ENSMUST00000207563.2	known	0.00	0.0	103	0;0	103	n	0.00	0.0	66	0;0	66	n	0.01	2.0	140	4;0	140	n	0.00	0.0	55	0;0	55	n	0.02	2.5	141	2;3	141	y	0.01	0.5	77	0;1	77	n	0.00	0.0	80	0;0	80	n	0.00	0.0	72	0;0	72	n	0.00	0.0	70	0;0	70	n	0.00	0.0	83	0;0	83	n	0.00	0.0	63	0;0	63	n	0.02	1.5	62	1;2	62	n	ENSMUSG00000003435.10	Supt5	chr7	protein_coding	suppressor of Ty 5, DSIF elongation factor subunit
known_NIR_17236	chr7	28030954	28037777	-	28030954;28037448	28037352;28037777	ES	ENSMUST00000207563.2	known	0.95	47	2.5	47	1;4	n	0.95	29	1.5	29	0;3	n	0.94	86	5.5	86	5;6	y	0.96	57	2.5	57	2;3	y	0.95	113	6.5	113	7;6	y	0.98	47	1.0	47	0;2	n	0.94	77	5.0	77	1;9	n	0.96	47	2.0	47	1;3	n	0.97	49	1.5	49	3;0	n	0.94	49	3.0	49	2;4	y	0.92	35	3.0	35	3;3	y	0.95	61	3.5	61	0;7	n	ENSMUSG00000003435.10	Supt5	chr7	protein_coding	suppressor of Ty 5, DSIF elongation factor subunit
known_NIR_17237	chr7	28069919	28070540	-	28069922	28070540	A3SS	ENSMUST00000094644.11	known	0.50	2	2	2	2	n	-	-	-	-	-	-	0.20	1	4	1	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	3	0	3	0	n	0.40	2	3	2	3	n	0.80	4	1	4	1	n	-	-	-	-	-	-	1.00	4	0	4	0	n	0.33	1	2	1	2	n	0.20	2	8	2	8	y	ENSMUSG00000037552.18	Plekhg2	chr7	protein_coding	pleckstrin homology domain containing, family G (with RhoGef domain) member 2
known_NIR_17238	chr7	28136999	28141094	+	28136999;28140955	28140859;28141094	ES	ENSMUST00000108292.9	known	0.10	3	26.0	3	12;40	y	0.06	2	31.5	2	21;42	y	0.00	0	39.0	0	23;55	n	0.00	0	28.0	0	18;38	n	0.02	1	45.5	1	28;63	n	0.00	0	20.0	0	12;28	n	0.00	0	58.5	0	37;80	n	0.00	0	20.5	0	14;27	n	0.00	0	19.5	0	17;22	n	0.05	2	36.5	2	10;63	y	0.04	1	26.5	1	17;36	n	0.12	3	22.5	3	9;36	y	ENSMUSG00000060791.16	Gmfg	chr7	protein_coding	glia maturation factor, gamma
known_NIR_17239	chr7	28140466	28140859	+	28136999	28140859	A5SS	ENSMUST00000108292.9	known	0.37	7	12	7	12	y	0.25	7	21	7	21	y	0.39	15	23	15	23	y	0.18	4	18	4	18	y	0.32	13	28	13	28	y	0.37	7	12	7	12	y	0.18	8	37	8	37	y	0.26	5	14	5	14	y	0.19	4	17	4	17	y	0.60	15	10	15	10	y	0.23	5	17	5	17	y	0.47	8	9	8	9	y	ENSMUSG00000060791.16	Gmfg	chr7	protein_coding	glia maturation factor, gamma
known_NIR_17240	chr7	28269291;28269738	28269597;28297460	-	28269291	28297460	cassetteExon	ENSMUST00000108283.8	known	0.17	3.0	15	3;3	15	y	0.18	1.5	7	2;1	7	n	0.13	4.0	26	5;3	26	y	0.11	2.0	16	2;2	16	y	0.07	1.5	20	0;3	20	n	0.11	2.0	17	4;0	17	n	0.08	1.5	17	3;0	17	n	0.09	1.5	16	1;2	16	n	0.00	0.0	10	0;0	10	n	0.21	3.5	13	2;5	13	y	0.03	0.5	18	0;1	18	n	0.16	2.5	13	3;2	13	y	ENSMUSG00000030602.14	Pak4	chr7	protein_coding	p21 (RAC1) activated kinase 4
known_NIR_17241	chr7	28435628	28437090	+	28435628;28436971	28436764;28437090	ES	ENSMUST00000108278.9	known	0.00	0	3.5	0	3;4	n	0.22	2	7.0	2	6;8	y	0.00	0	2.0	0	2;2	n	0.00	0	6.0	0	4;8	n	0.00	0	9.5	0	8;11	n	-	-	-	-	-	-	0.27	2	5.5	2	7;4	y	0.33	1	2.0	1	0;4	n	0.29	1	2.5	1	4;1	n	0.57	2	1.5	2	2;1	n	0.53	4	3.5	4	4;3	y	0.00	0	4.5	0	6;3	n	ENSMUSG00000030598.16	Fbxo17	chr7	protein_coding	F-box protein 17
known_NIR_17242	chr7	28466292	28467057	+	28466292	28476283	A3SS	ENSMUST00000170068.9	known	0.96	26	1	26	1	n	0.92	22	2	22	2	y	1.00	42	0	42	0	n	1.00	28	0	28	0	n	1.00	28	0	28	0	n	1.00	27	0	27	0	n	0.94	34	2	34	2	y	0.94	31	2	31	2	y	0.96	26	1	26	1	n	0.88	21	3	21	3	y	0.95	39	2	39	2	y	0.97	37	1	37	1	n	ENSMUSG00000015149.15	Sirt2	chr7	protein_coding	sirtuin 2
known_NIR_17243	chr7	28466292	28471236	+	28467103	28471236	5pMXE	ENSMUST00000155327.8	known	0.67	60	29	60	29	y	0.62	36	22	36	22	y	0.60	68	46	68	46	y	0.70	69	30	69	30	y	0.74	93	33	93	33	y	0.51	35	34	35	34	y	0.64	69	38	69	38	y	0.61	56	36	56	36	y	0.69	76	34	76	34	y	0.72	84	33	84	33	y	0.67	62	31	62	31	y	0.70	96	41	96	41	y	ENSMUSG00000015149.15	Sirt2	chr7	protein_coding	sirtuin 2
known_NIR_17244	chr7	28466292;28467103	28467057;28471236	+	28466292	28471236	cassetteExon	ENSMUST00000122915.8	known	0.31	27.5	60	26;29	60	y	0.38	22.0	36	22;22	36	y	0.39	44.0	68	42;46	68	y	0.30	29.0	69	28;30	69	y	0.25	30.5	93	28;33	93	y	0.47	30.5	35	27;34	35	y	0.34	36.0	69	34;38	69	y	0.37	33.5	56	31;36	56	y	0.28	30.0	76	26;34	76	y	0.24	27.0	84	21;33	84	y	0.36	35.0	62	39;31	62	y	0.29	39.0	96	37;41	96	y	ENSMUSG00000015149.15	Sirt2	chr7	protein_coding	sirtuin 2
known_NIR_17245	chr7	28466292;28471633	28471236;28476283	+	28466292	28476283	cassetteExon	ENSMUST00000170068.9	known	0.99	86.0	1	60;112	1	n	0.97	68.5	2	36;101	2	y	1.00	86.0	0	68;104	0	n	1.00	97.5	0	69;126	0	n	1.00	109.0	0	93;125	0	n	1.00	54.5	0	35;74	0	n	0.98	97.0	2	69;125	2	y	0.97	60.0	2	56;64	2	y	0.99	87.0	1	76;98	1	n	0.97	111.5	3	84;139	3	y	0.98	87.0	2	62;112	2	y	0.99	123.5	1	96;151	1	n	ENSMUSG00000015149.15	Sirt2	chr7	protein_coding	sirtuin 2
known_NIR_17246	chr7	28487253	28487345	+	28487253	28487342	A3SS	ENSMUST00000122915.8	known	0.00	0	154	0	154	n	0.00	0	156	0	156	n	0.06	11	159	11	159	y	0.00	0	137	0	137	n	0.08	18	217	18	217	y	0.00	0	80	0	80	n	0.00	0	204	0	204	n	0.00	0	109	0	109	n	0.00	0	136	0	136	n	0.06	13	211	13	211	y	0.06	12	188	12	188	y	0.00	0	199	0	199	n	ENSMUSG00000015149.15	Sirt2	chr7	protein_coding	sirtuin 2
known_NIR_17247	chr7	28508284	28512704	+	28508284;28510593	28510097;28512704	ES	ENSMUST00000174548.8	known	0.39	8	12.5	8	2;23	y	0.06	1	14.5	1	1;28	n	0.19	9	39.0	9	4;74	y	0.18	4	18.5	4	2;35	y	0.17	5	24.5	5	4;45	y	0.06	1	15.5	1	0;31	n	0.10	2	17.5	2	5;30	y	0.18	3	14.0	3	0;28	n	0.26	7	19.5	7	2;37	y	0.30	14	32.5	14	2;63	y	0.21	5	18.5	5	3;34	y	0.24	8	26.0	8	2;50	y	ENSMUSG00000015165.17	Hnrnpl	chr7	protein_coding	heterogeneous nuclear ribonucleoprotein L
known_NIR_17248	chr7	28508284	28512704	+	28510593	28512704	5pMXE	ENSMUST00000038572.15	known	0.26	8	23	8	23	y	0.03	1	28	1	28	n	0.11	9	74	9	74	y	0.10	4	35	4	35	y	0.10	5	45	5	45	y	0.03	1	31	1	31	n	0.06	2	30	2	30	y	0.10	3	28	3	28	y	0.16	7	37	7	37	y	0.18	14	63	14	63	y	0.13	5	34	5	34	y	0.14	8	50	8	50	y	ENSMUSG00000015165.17	Hnrnpl	chr7	protein_coding	heterogeneous nuclear ribonucleoprotein L
known_NIR_17249	chr7	28508974	28512704	+	28508284	28512704	A5SS	ENSMUST00000173750.8	known	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.18	3	14	3	14	y	0.00	0	5	0	5	n	0.00	0	8	0	8	n	ENSMUSG00000015165.17	Hnrnpl	chr7	protein_coding	heterogeneous nuclear ribonucleoprotein L
known_NIR_17250	chr7	28508974	28512704	+	28510593	28512704	A5SS&ES	ENSMUST00000174548.8	known	0.00	0	23	0	23	n	0.00	0	28	0	28	n	0.00	0	74	0	74	n	0.00	0	35	0	35	n	0.00	0	45	0	45	n	0.00	0	31	0	31	n	0.00	0	30	0	30	n	0.00	0	28	0	28	n	0.00	0	37	0	37	n	0.05	3	63	3	63	y	0.00	0	34	0	34	n	0.00	0	50	0	50	n	ENSMUSG00000015165.17	Hnrnpl	chr7	protein_coding	heterogeneous nuclear ribonucleoprotein L
known_NIR_17251	chr7	28514777;28516829	28516760;28517886	+	28514777	28517886	cassetteExon	ENSMUST00000174548.8	known	0.13	13.5	90	16;11	90	y	0.19	15.5	68	13;18	68	y	0.07	18.0	233	17;19	233	y	0.10	13.0	111	15;11	111	y	0.12	18.0	138	18;18	138	y	0.11	11.0	93	11;11	93	y	0.14	20.5	121	18;23	121	y	0.07	8.0	101	8;8	101	y	0.09	9.5	91	10;9	91	y	0.11	19.5	164	23;16	164	y	0.10	17.0	149	17;17	149	y	0.09	14.5	140	13;16	140	y	ENSMUSG00000015165.17	Hnrnpl	chr7	protein_coding	heterogeneous nuclear ribonucleoprotein L
known_NIR_17252	chr7	28525548	28529225	+	28525698	28529225	A5SS&ES	ENSMUST00000154839.8	known	0.00	0	1691	0	1691	n	0.00	1	1840	1	1840	n	0.00	0	1858	0	1858	n	0.00	0	1782	0	1782	n	0.00	2	2561	2	2561	y	0.00	2	1256	2	1256	y	0.00	0	3390	0	3390	n	0.00	1	1495	1	1495	n	0.00	2	1364	2	1364	y	0.00	1	2986	1	2986	n	0.00	0	1892	0	1892	n	0.00	0	1498	0	1498	n	ENSMUSG00000053898.13	Ech1	chr7	protein_coding	enoyl coenzyme A hydratase 1, peroxisomal
known_NIR_17253	chr7	28530712	28531142	+	28530712;28530885	28530814;28531142	ES	ENSMUST00000066264.13	known	0.00	0	1365.0	0	1171;1559	n	0.00	0	1549.0	0	1328;1770	n	0.00	0	1410.5	0	1225;1596	n	0.00	0	1375.5	0	1219;1532	n	0.00	3	2143.0	3	1850;2436	y	0.00	0	906.5	0	784;1029	n	0.00	2	2766.0	2	2396;3136	y	0.00	4	1095.5	4	1010;1181	y	0.00	0	998.5	0	914;1083	n	0.00	2	2353.0	2	2036;2670	y	0.00	0	1696.0	0	1487;1905	n	0.00	2	1152.0	2	1031;1273	y	ENSMUSG00000053898.13	Ech1	chr7	protein_coding	enoyl coenzyme A hydratase 1, peroxisomal
known_NIR_17254	chr7	28540116	28540289	+	28540035	28540289	A5SS	ENSMUST00000208971.2	known	0.00	0	13	0	13	n	0.04	1	27	1	27	n	0.09	3	32	3	32	y	0.00	0	32	0	32	n	0.05	2	40	2	40	y	0.00	0	18	0	18	n	0.04	3	64	3	64	y	0.00	0	26	0	26	n	0.00	0	17	0	17	n	0.00	0	53	0	53	n	0.03	1	37	1	37	n	0.00	0	19	0	19	n	ENSMUSG00000053964.18	Lgals4	chr7	protein_coding	lectin, galactose binding, soluble 4
known_NIR_17255	chr7	28594084;28594611	28594546;28595514	-	28594084;28594937	28594857;28595514	MXE	ENSMUST00000068045.14	known	0.02	4.5	272.5	5;4	298;247	y	0.01	3.0	265.0	5;1	292;238	n	0.01	4.5	334.0	6;3	351;317	y	0.01	2.5	250.5	3;2	279;222	y	0.01	4.0	420.5	4;4	458;383	y	0.02	3.5	198.5	5;2	232;165	y	0.01	4.0	331.5	4;4	335;328	y	0.01	1.5	223.0	3;0	250;196	n	0.00	0.5	208.5	0;1	221;196	n	0.01	3.0	308.5	1;5	333;284	n	0.00	0.5	232.5	0;1	258;207	n	0.02	5.0	292.5	4;6	320;265	y	ENSMUSG00000054808.16	Actn4	chr7	protein_coding	actinin alpha 4
known_NIR_17256	chr7	28594611	28595514	-	28594937	28595514	A3SS&ES	ENSMUST00000217157.2	known	0.02	4	247	4	247	y	0.00	1	238	1	238	n	0.01	3	317	3	317	y	0.01	2	222	2	222	y	0.01	4	383	4	383	y	0.01	2	165	2	165	y	0.01	4	328	4	328	y	0.00	0	196	0	196	n	0.01	1	196	1	196	n	0.02	5	284	5	284	y	0.00	1	207	1	207	n	0.02	6	265	6	265	y	ENSMUSG00000054808.16	Actn4	chr7	protein_coding	actinin alpha 4
known_NIR_17257	chr7	28606489;28609413	28609328;28611665	-	28606489;28611000	28610915;28611665	MXE	ENSMUST00000068045.14	known	0.00	0.0	119.0	0;0	130;108	n	0.00	0.0	80.0	0;0	91;69	n	0.00	0.5	181.0	1;0	204;158	n	0.01	1.0	146.5	2;0	159;134	n	0.00	0.0	243.0	0;0	246;240	n	0.00	0.0	117.0	0;0	118;116	n	0.00	0.0	156.0	0;0	163;149	n	0.00	0.0	136.0	0;0	140;132	n	0.01	1.0	96.0	1;1	97;95	n	0.00	0.5	137.5	1;0	140;135	n	0.00	0.0	112.5	0;0	101;124	n	0.01	2.0	153.5	2;2	149;158	y	ENSMUSG00000054808.16	Actn4	chr7	protein_coding	actinin alpha 4
known_NIR_17258	chr7	28677415	28679744	-	28677415	28679869	A5SS	ENSMUST00000066070.7	known	0.01	4	452	4	452	y	0.00	2	480	2	480	y	0.00	1	481	1	481	n	0.00	0	416	0	416	n	0.00	1	498	1	498	n	0.01	2	266	2	266	y	0.01	3	587	3	587	y	0.00	1	291	1	291	n	0.00	0	330	0	330	n	0.01	5	590	5	590	y	0.01	4	482	4	482	y	0.00	0	518	0	518	n	ENSMUSG00000053565.11	Eif3k	chr7	protein_coding	eukaryotic translation initiation factor 3, subunit K
known_NIR_17259	chr7	28677415	28681099	-	28677415;28679967	28679869;28681099	ES	ENSMUST00000066070.7	known	0.00	2	402.5	2	452;353	y	0.00	0	407.0	0	480;334	n	0.00	0	438.0	0	481;395	n	0.00	0	372.0	0	416;328	n	0.01	3	427.5	3	498;357	y	0.00	0	244.0	0	266;222	n	0.00	1	489.5	1	587;392	n	0.00	0	237.5	0	291;184	n	0.00	1	289.0	1	330;248	n	0.00	0	505.5	0	590;421	n	0.00	0	433.5	0	482;385	n	0.00	0	464.5	0	518;411	n	ENSMUSG00000053565.11	Eif3k	chr7	protein_coding	eukaryotic translation initiation factor 3, subunit K
known_NIR_17260	chr7	28677415;28679967	28679744;28681099	-	28677415	28681099	cassetteExon	ENSMUST00000207683.2	known	0.99	178.5	2	4;353	2	y	1.00	168.0	0	2;334	0	n	1.00	198.0	0	1;395	0	n	1.00	164.0	0	0;328	0	n	0.98	179.0	3	1;357	3	n	1.00	112.0	0	2;222	0	n	0.99	197.5	1	3;392	1	n	1.00	92.5	0	1;184	0	n	0.99	124.0	1	0;248	1	n	1.00	213.0	0	5;421	0	n	1.00	194.5	0	4;385	0	n	1.00	205.5	0	0;411	0	n	ENSMUSG00000053565.11	Eif3k	chr7	protein_coding	eukaryotic translation initiation factor 3, subunit K
known_NIR_17261	chr7	28743354	28745029	-	28743354;28744361	28744344;28745029	ES	ENSMUST00000214374.2	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.38	35	57.5	35	63;52	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030592.19	Ryr1	chr7	protein_coding	ryanodine receptor 1, skeletal muscle
known_NIR_17262	chr7	28852914	28854041	-	28852914;28853960	28853844;28854041	ES	ENSMUST00000164589.9	known	0.02	1	46.5	1	37;56	n	0.00	0	42.5	0	39;46	n	0.00	0	37.5	0	27;48	n	0.00	0	26.5	0	22;31	n	0.00	0	51.5	0	40;63	n	0.00	0	20.5	0	12;29	n	0.00	0	54.0	0	45;63	n	0.00	0	23.5	0	16;31	n	0.00	0	40.5	0	30;51	n	0.01	1	68.5	1	57;80	n	0.04	2	53.5	2	39;68	y	0.00	0	49.5	0	30;69	n	ENSMUSG00000030590.16	Fam98c	chr7	protein_coding	family with sequence similarity 98, member C
known_NIR_17263	chr7	28852914	28854041	-	28853960	28854041	A3SS	ENSMUST00000147561.8	known	0.02	1	56	1	56	n	0.00	0	46	0	46	n	0.00	0	48	0	48	n	0.00	0	31	0	31	n	0.00	0	63	0	63	n	0.00	0	29	0	29	n	0.00	0	63	0	63	n	0.00	0	31	0	31	n	0.00	0	51	0	51	n	0.01	1	80	1	80	n	0.03	2	68	2	68	y	0.00	0	69	0	69	n	ENSMUSG00000030590.16	Fam98c	chr7	protein_coding	family with sequence similarity 98, member C
known_NIR_17264	chr7	28853063	28853844	-	28852914	28853844	A3SS	ENSMUST00000164589.9	known	0.05	2	37	2	37	y	0.00	0	39	0	39	n	0.00	0	27	0	27	n	0.00	0	22	0	22	n	0.00	0	40	0	40	n	0.00	0	12	0	12	n	0.02	1	45	1	45	n	0.00	0	16	0	16	n	0.00	0	30	0	30	n	0.00	0	57	0	57	n	0.00	0	39	0	39	n	0.00	0	30	0	30	n	ENSMUSG00000030590.16	Fam98c	chr7	protein_coding	family with sequence similarity 98, member C
known_NIR_17265	chr7	28853956	28854041	-	28853960	28854041	A3SS	ENSMUST00000164589.9	known	0.00	0	56	0	56	n	0.00	0	46	0	46	n	0.00	0	48	0	48	n	0.09	3	31	3	31	y	0.06	4	63	4	63	y	0.00	0	29	0	29	n	0.00	0	63	0	63	n	0.00	0	31	0	31	n	0.02	1	51	1	51	n	0.00	0	80	0	80	n	0.00	0	68	0	68	n	0.00	0	69	0	69	n	ENSMUSG00000030590.16	Fam98c	chr7	protein_coding	family with sequence similarity 98, member C
known_NIR_17266	chr7	28855234	28855310	-	28855234	28855456	A5SS	ENSMUST00000134176.8	known	1.00	13	0	13	0	n	1.00	20	0	20	0	n	0.89	17	2	17	2	y	0.90	28	3	28	3	y	0.88	28	4	28	4	y	0.79	11	3	11	3	y	1.00	37	0	37	0	n	1.00	16	0	16	0	n	0.94	15	1	15	1	n	0.95	37	2	37	2	y	1.00	33	0	33	0	n	1.00	20	0	20	0	n	ENSMUSG00000030590.16	Fam98c	chr7	protein_coding	family with sequence similarity 98, member C
known_NIR_17267	chr7	28937870	28943495	+	28937861	28943495	A5SS	ENSMUST00000108238.8	known	0.18	7	31	7	31	y	0.41	11	16	11	16	y	0.35	14	26	14	26	y	0.24	8	25	8	25	y	0.34	12	23	12	23	y	0.33	8	16	8	16	y	0.17	7	35	7	35	y	0.23	3	10	3	10	y	0.43	10	13	10	13	y	0.28	10	26	10	26	y	0.48	12	13	12	13	y	0.35	17	31	17	31	y	ENSMUSG00000030588.13	Yif1b	chr7	protein_coding	Yip1 interacting factor homolog B (S. cerevisiae)
known_NIR_17268	chr7	28937988	28943495	+	28937861	28943495	A5SS	ENSMUST00000108238.8	known	0.21	8	31	8	31	y	0.33	8	16	8	16	y	0.07	2	26	2	26	y	0.19	6	25	6	25	y	0.15	4	23	4	23	y	0.00	0	16	0	16	n	0.10	4	35	4	35	y	0.23	3	10	3	10	y	0.35	7	13	7	13	y	0.19	6	26	6	26	y	0.48	12	13	12	13	y	0.26	11	31	11	31	y	ENSMUSG00000030588.13	Yif1b	chr7	protein_coding	Yip1 interacting factor homolog B (S. cerevisiae)
known_NIR_17269	chr7	28937988	28943495	+	28937870	28943495	A5SS	ENSMUST00000032809.10	known	0.53	8	7	8	7	y	0.42	8	11	8	11	y	0.12	2	14	2	14	y	0.43	6	8	6	8	y	0.25	4	12	4	12	y	0.00	0	8	0	8	n	0.36	4	7	4	7	y	0.50	3	3	3	3	n	0.41	7	10	7	10	y	0.38	6	10	6	10	y	0.50	12	12	12	12	y	0.39	11	17	11	17	y	ENSMUSG00000030588.13	Yif1b	chr7	protein_coding	Yip1 interacting factor homolog B (S. cerevisiae)
known_NIR_17270	chr7	28937988	28943495	+	28938036	28943495	A5SS	ENSMUST00000108237.2	known	0.21	8	30	8	30	y	0.21	8	31	8	31	y	0.07	2	28	2	28	y	0.11	6	51	6	51	y	0.04	4	97	4	97	y	0.00	0	47	0	47	n	0.08	4	46	4	46	y	0.06	3	45	3	45	y	0.09	7	67	7	67	y	0.08	6	67	6	67	y	0.17	12	57	12	57	y	0.11	11	88	11	88	y	ENSMUSG00000030588.13	Yif1b	chr7	protein_coding	Yip1 interacting factor homolog B (S. cerevisiae)
known_NIR_17271	chr7	28938018	28943495	+	28937861	28943495	A5SS	ENSMUST00000108238.8	known	0.03	1	31	1	31	n	0.06	1	16	1	16	n	0.04	1	26	1	26	n	0.11	3	25	3	25	y	0.00	0	23	0	23	n	0.06	1	16	1	16	n	0.03	1	35	1	35	n	0.23	3	10	3	10	y	0.13	2	13	2	13	y	0.04	1	26	1	26	n	0.07	1	13	1	13	n	0.06	2	31	2	31	y	ENSMUSG00000030588.13	Yif1b	chr7	protein_coding	Yip1 interacting factor homolog B (S. cerevisiae)
known_NIR_17272	chr7	28938018	28943495	+	28937870	28943495	A5SS	ENSMUST00000032809.10	known	0.12	1	7	1	7	n	0.08	1	11	1	11	n	0.07	1	14	1	14	n	0.27	3	8	3	8	y	0.00	0	12	0	12	n	0.11	1	8	1	8	n	0.12	1	7	1	7	n	0.50	3	3	3	3	n	0.17	2	10	2	10	y	0.09	1	10	1	10	n	0.08	1	12	1	12	n	0.11	2	17	2	17	y	ENSMUSG00000030588.13	Yif1b	chr7	protein_coding	Yip1 interacting factor homolog B (S. cerevisiae)
known_NIR_17273	chr7	28938018	28943495	+	28937988	28943495	A5SS	ENSMUST00000138128.3	known	0.11	1	8	1	8	n	0.11	1	8	1	8	n	0.33	1	2	1	2	n	0.33	3	6	3	6	n	0.00	0	4	0	4	n	1.00	1	0	1	0	n	0.20	1	4	1	4	n	0.50	3	3	3	3	n	0.22	2	7	2	7	n	0.14	1	6	1	6	n	0.08	1	12	1	12	n	0.15	2	11	2	11	y	ENSMUSG00000030588.13	Yif1b	chr7	protein_coding	Yip1 interacting factor homolog B (S. cerevisiae)
known_NIR_17274	chr7	28938018	28943495	+	28938036	28943495	A5SS	ENSMUST00000108237.2	known	0.03	1	30	1	30	n	0.03	1	31	1	31	n	0.03	1	28	1	28	n	0.06	3	51	3	51	y	0.00	0	97	0	97	n	0.02	1	47	1	47	n	0.02	1	46	1	46	n	0.06	3	45	3	45	y	0.03	2	67	2	67	y	0.01	1	67	1	67	n	0.02	1	57	1	57	n	0.02	2	88	2	88	y	ENSMUSG00000030588.13	Yif1b	chr7	protein_coding	Yip1 interacting factor homolog B (S. cerevisiae)
known_NIR_17275	chr7	28938036	28943495	+	28937861	28943495	A5SS	ENSMUST00000108238.8	known	0.49	30	31	30	31	y	0.66	31	16	31	16	y	0.52	28	26	28	26	y	0.67	51	25	51	25	y	0.81	97	23	97	23	y	0.75	47	16	47	16	y	0.57	46	35	46	35	y	0.82	45	10	45	10	y	0.84	67	13	67	13	y	0.72	67	26	67	26	y	0.81	57	13	57	13	y	0.74	88	31	88	31	y	ENSMUSG00000030588.13	Yif1b	chr7	protein_coding	Yip1 interacting factor homolog B (S. cerevisiae)
known_NIR_17276	chr7	28938036	28943495	+	28937870	28943495	A5SS	ENSMUST00000032809.10	known	0.81	30	7	30	7	y	0.74	31	11	31	11	y	0.67	28	14	28	14	y	0.86	51	8	51	8	y	0.89	97	12	97	12	y	0.85	47	8	47	8	y	0.87	46	7	46	7	y	0.94	45	3	45	3	y	0.87	67	10	67	10	y	0.87	67	10	67	10	y	0.83	57	12	57	12	y	0.84	88	17	88	17	y	ENSMUSG00000030588.13	Yif1b	chr7	protein_coding	Yip1 interacting factor homolog B (S. cerevisiae)
known_NIR_17277	chr7	28944264	28945326	+	28944264;28945246	28945091;28945326	ES	ENSMUST00000108238.8	known	0.00	0	94.0	0	106;82	n	0.00	0	108.0	0	113;103	n	0.00	0	69.5	0	84;55	n	0.00	0	110.0	0	127;93	n	0.01	1	152.5	1	165;140	n	0.02	1	61.5	1	57;66	n	0.01	1	123.0	1	141;105	n	0.00	0	73.5	0	89;58	n	0.02	2	108.5	2	105;112	y	0.00	0	130.0	0	144;116	n	0.00	0	140.0	0	158;122	n	0.00	0	170.0	0	182;158	n	ENSMUSG00000030588.13	Yif1b	chr7	protein_coding	Yip1 interacting factor homolog B (S. cerevisiae)
known_NIR_17278	chr7	28958877	28959796	-	28958877;28959554	28959482;28959796	ES	ENSMUST00000207601.2	known	0.99	364	3.5	364	4;3	y	1.00	453	0.0	453	0;0	n	0.99	694	5.5	694	0;11	n	0.99	461	4.5	461	1;8	n	1.00	533	2.0	533	0;4	n	1.00	389	0.0	389	0;0	n	1.00	572	0.0	572	0;0	n	1.00	336	0.0	336	0;0	n	1.00	346	0.0	346	0;0	n	1.00	489	0.0	489	0;0	n	1.00	419	0.0	419	0;0	n	1.00	378	0.0	378	0;0	n	ENSMUSG00000074227.13	Spint2	chr7	protein_coding	serine protease inhibitor, Kunitz type 2
known_NIR_17279	chr7	28959855;28963190	28963020;28980937	-	28959855	28980937	cassetteExon	ENSMUST00000207601.2	known	0.10	41.0	359	40;42	359	y	0.08	35.0	383	44;26	383	y	0.10	63.0	598	78;48	598	y	0.10	44.0	385	60;28	385	y	0.09	43.5	468	46;41	468	y	0.09	31.5	322	34;29	322	y	0.08	42.5	463	47;38	463	y	0.06	21.5	317	25;18	317	y	0.10	35.0	311	47;23	311	y	0.09	47.0	455	55;39	455	y	0.10	43.5	371	48;39	371	y	0.10	33.5	293	37;30	293	y	ENSMUSG00000074227.13	Spint2	chr7	protein_coding	serine protease inhibitor, Kunitz type 2
known_NIR_17280	chr7	29030966	29031650	-	29030969	29031650	A3SS	ENSMUST00000182223.8	known	0.78	7	2	7	2	n	1.00	7	0	7	0	n	0.50	2	2	2	2	n	0.75	12	4	12	4	y	0.91	10	1	10	1	n	0.67	2	1	2	1	n	0.72	13	5	13	5	y	0.33	1	2	1	2	n	0.78	7	2	7	2	n	0.57	8	6	8	6	y	0.89	17	2	17	2	y	0.65	11	6	11	6	y	ENSMUSG00000030583.17	Sipa1l3	chr7	protein_coding	signal-induced proliferation-associated 1 like 3
known_NIR_17281	chr7	29053607;29063733	29063596;29065976	-	29053607	29065976	cassetteExon	ENSMUST00000183330.8	known	1.00	5.0	0	6;4	0	n	1.00	2.0	0	2;2	0	n	1.00	3.5	0	3;4	0	n	0.78	7.0	2	6;8	2	y	1.00	3.5	0	4;3	0	n	1.00	1.5	0	1;2	0	n	1.00	3.5	0	4;3	0	n	1.00	5.0	0	5;5	0	n	1.00	3.5	0	5;2	0	n	1.00	9.5	0	12;7	0	n	1.00	3.5	0	3;4	0	n	1.00	2.5	0	3;2	0	n	ENSMUSG00000030583.17	Sipa1l3	chr7	protein_coding	signal-induced proliferation-associated 1 like 3
known_NIR_17282	chr7	29484326	29485600	+	29484326	29485644	A3SS	ENSMUST00000032803.12	known	0.00	0	5	0	5	n	0.25	1	3	1	3	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.71	5	2	5	2	n	0.60	3	2	3	2	n	0.11	1	8	1	8	n	0.67	4	2	4	2	n	1.00	7	0	7	0	n	0.60	3	2	3	2	n	0.40	2	3	2	3	n	0.64	7	4	7	4	y	ENSMUSG00000047473.15	Zfp30	chr7	protein_coding	zinc finger protein 30
known_NIR_17283	chr7	29487600	29488766	+	29487600	29488763	A3SS	ENSMUST00000032803.12	known	1.00	4	0	4	0	n	0.62	5	3	5	3	n	0.50	2	2	2	2	n	0.43	3	4	3	4	n	0.79	15	4	15	4	y	-	-	-	-	-	-	0.78	7	2	7	2	n	1.00	1	0	1	0	n	0.78	7	2	7	2	n	0.82	9	2	9	2	y	0.88	7	1	7	1	n	0.80	12	3	12	3	y	ENSMUSG00000047473.15	Zfp30	chr7	protein_coding	zinc finger protein 30
known_NIR_17284	chr7	29515714	29522405	+	29515714	29522495	A3SS	ENSMUST00000178162.3	known	0.86	6	1	6	1	n	1.00	3	0	3	0	n	0.80	8	2	8	2	y	1.00	9	0	9	0	n	0.90	18	2	18	2	y	0.90	9	1	9	1	n	1.00	8	0	8	0	n	0.90	9	1	9	1	n	1.00	8	0	8	0	n	0.90	9	1	9	1	n	1.00	2	0	2	0	n	0.83	5	1	5	1	n	ENSMUSG00000011427.17	Zfp790	chr7	protein_coding	zinc finger protein 790
known_NIR_17285	chr7	29518623	29522405	+	29515714	29522405	A5SS	ENSMUST00000032796.14	known	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.27	3	8	3	8	y	0.10	1	9	1	9	n	0.00	0	18	0	18	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.18	2	9	2	9	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000011427.17	Zfp790	chr7	protein_coding	zinc finger protein 790
known_NIR_17286	chr7	29559518	29572317	+	29559518;29560493	29560441;29572317	ES	ENSMUST00000074876.13	known	-	-	-	-	-	-	1.00	2	0.0	2	0;0	n	0.50	1	1.0	1	0;2	n	1.00	2	0.0	2	0;0	n	0.53	4	3.5	4	2;5	y	0.00	0	2.0	0	2;2	n	0.00	0	0.5	0	0;1	n	0.00	0	0.5	0	1;0	n	0.00	0	0.5	0	1;0	n	0.57	2	1.5	2	1;2	n	0.67	1	0.5	1	1;0	n	0.91	5	0.5	5	0;1	n	ENSMUSG00000058402.15	Zfp420	chr7	protein_coding	zinc finger protein 420
known_NIR_17287	chr7	29697635	29713268	+	29697635	29713265	A3SS	ENSMUST00000148442.8	known	0.80	4	1	4	1	n	0.00	0	7	0	7	n	0.20	3	12	3	12	y	0.00	0	3	0	3	n	0.11	1	8	1	8	n	0.33	1	2	1	2	n	0.22	2	7	2	7	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.27	3	8	3	8	y	0.00	0	2	0	2	n	0.33	4	8	4	8	y	ENSMUSG00000074221.13	Zfp568	chr7	protein_coding	zinc finger protein 568
known_NIR_17288	chr7	29794636	29798953	+	29794307	29798953	A5SS	ENSMUST00000123095.8	known	0.88	14	2	14	2	y	0.60	3	2	3	2	n	1.00	13	0	13	0	n	0.91	10	1	10	1	n	0.86	18	3	18	3	y	0.79	11	3	11	3	y	0.90	18	2	18	2	y	1.00	11	0	11	0	n	0.70	7	3	7	3	y	0.80	16	4	16	4	y	0.92	11	1	11	1	n	0.57	8	6	8	6	y	ENSMUSG00000049421.14	Zfp260	chr7	protein_coding	zinc finger protein 260
known_NIR_17289	chr7	29794636	29803655	+	29794636	29798953	3pMXE	ENSMUST00000149302.2	known	0.00	0	14	0	14	n	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.05	1	18	1	18	n	0.00	0	11	0	11	n	0.00	0	18	0	18	n	0.15	2	11	2	11	y	0.00	0	7	0	7	n	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.11	1	8	1	8	n	ENSMUSG00000049421.14	Zfp260	chr7	protein_coding	zinc finger protein 260
known_NIR_17290	chr7	29794636	29803655	+	29794636;29799147	29798953;29803655	ES	ENSMUST00000050735.12	known	0.00	0	14.0	0	14;14	n	0.00	0	6.5	0	3;10	n	0.00	0	20.5	0	13;28	n	0.00	0	19.0	0	10;28	n	0.04	1	26.0	1	18;34	n	0.00	0	13.5	0	11;16	n	0.00	0	21.0	0	18;24	n	0.11	2	16.0	2	11;21	y	0.00	0	8.5	0	7;10	n	0.00	0	20.0	0	16;24	n	0.00	0	13.5	0	11;16	n	0.04	1	22.0	1	8;36	n	ENSMUSG00000049421.14	Zfp260	chr7	protein_coding	zinc finger protein 260
known_NIR_17291	chr7	29794636	29803655	+	29799147	29803655	A5SS&ES	ENSMUST00000123095.8	known	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.00	0	28	0	28	n	0.00	0	28	0	28	n	0.03	1	34	1	34	n	0.00	0	16	0	16	n	0.00	0	24	0	24	n	0.09	2	21	2	21	y	0.00	0	10	0	10	n	0.00	0	24	0	24	n	0.00	0	16	0	16	n	0.03	1	36	1	36	n	ENSMUSG00000049421.14	Zfp260	chr7	protein_coding	zinc finger protein 260
known_NIR_17292	chr7	29799147	29803658	+	29799147	29803655	A3SS	ENSMUST00000123095.8	known	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.00	0	28	0	28	n	0.15	5	28	5	28	y	0.00	0	34	0	34	n	0.00	0	16	0	16	n	0.00	0	24	0	24	n	0.00	0	21	0	21	n	0.00	0	10	0	10	n	0.00	0	24	0	24	n	0.00	0	16	0	16	n	0.00	0	36	0	36	n	ENSMUSG00000049421.14	Zfp260	chr7	protein_coding	zinc finger protein 260
known_NIR_17293	chr7	29883764	29884510	+	29883670	29884510	A5SS	ENSMUST00000098594.4	known	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.03	7	212	7	212	y	0.00	0	2	0	2	n	0.00	0	15	0	15	n	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.00	0	19	0	19	n	ENSMUSG00000074218.4	Cox7a1	chr7	protein_coding	cytochrome c oxidase subunit 7A1
known_NIR_17294	chr7	29892325	29892672	-	29892325	29893303	A5SS	ENSMUST00000001845.13	known	0.00	0	195	0	195	n	0.00	0	168	0	168	n	0.00	0	225	0	225	n	0.00	0	217	0	217	n	0.00	0	270	0	270	n	0.01	1	156	1	156	n	0.01	2	320	2	320	y	0.00	0	139	0	139	n	0.00	0	200	0	200	n	0.00	0	291	0	291	n	0.00	1	230	1	230	n	0.00	0	237	0	237	n	ENSMUSG00000001794.14	Capns1	chr7	protein_coding	calpain, small subunit 1
known_NIR_17295	chr7	29923970	29926318	-	29923970	29926269	A5SS	ENSMUST00000006254.6	known	0.07	6	77	6	77	y	0.02	2	120	2	120	y	0.00	1	212	1	212	n	0.02	2	106	2	106	y	0.07	11	156	11	156	y	0.02	3	151	3	151	y	0.02	3	145	3	145	y	0.00	0	134	0	134	n	0.00	0	105	0	105	n	0.04	7	155	7	155	y	0.01	2	134	2	134	y	0.02	3	136	3	136	y	ENSMUSG00000006095.13	Tbcb	chr7	protein_coding	tubulin folding cofactor B
known_NIR_17296	chr7	29931803	29931907	+	29931829	29931907	A5SS	ENSMUST00000019882.16	known	0.02	4	176	4	176	y	0.02	3	190	3	190	y	0.01	2	156	2	156	y	0.00	0	138	0	138	n	0.01	2	204	2	204	y	0.02	2	79	2	79	y	0.01	2	159	2	159	y	0.00	0	106	0	106	n	0.00	0	136	0	136	n	0.01	2	207	2	207	y	0.01	2	196	2	196	y	0.00	0	166	0	166	n	ENSMUSG00000019738.16	Polr2i	chr7	protein_coding	polymerase (RNA) II (DNA directed) polypeptide I
known_NIR_17297	chr7	29931961	29932117	+	29931961	29932175	A3SS	ENSMUST00000019882.16	known	0.01	4	263	4	263	y	0.01	2	312	2	312	y	0.00	0	256	0	256	n	0.01	1	182	1	182	n	0.00	1	276	1	276	n	0.02	3	131	3	131	y	0.00	0	252	0	252	n	0.01	1	183	1	183	n	0.00	0	214	0	214	n	0.00	1	328	1	328	n	0.00	0	315	0	315	n	0.01	2	247	2	247	y	ENSMUSG00000019738.16	Polr2i	chr7	protein_coding	polymerase (RNA) II (DNA directed) polypeptide I
known_NIR_17298	chr7	30008359	30008906	+	30008259	30008906	A5SS	ENSMUST00000060834.12	known	0.00	0	20	0	20	n	0.08	2	22	2	22	y	0.02	1	50	1	50	n	0.00	0	18	0	18	n	0.03	1	30	1	30	n	0.04	1	23	1	23	n	0.00	0	29	0	29	n	0.00	0	16	0	16	n	0.07	1	14	1	14	n	0.03	1	31	1	31	n	0.00	0	17	0	17	n	0.00	0	41	0	41	n	ENSMUSG00000042831.14	Alkbh6	chr7	protein_coding	alkB homolog 6
known_NIR_17299	chr7	30008984	30009453	+	30008984	30009411	A3SS	ENSMUST00000060834.12	known	0.00	0	34	0	34	n	0.00	0	45	0	45	n	0.04	4	87	4	87	y	0.00	0	35	0	35	n	0.01	1	78	1	78	n	0.04	2	43	2	43	y	0.00	0	62	0	62	n	0.03	1	37	1	37	n	0.00	0	30	0	30	n	0.00	0	60	0	60	n	0.00	0	47	0	47	n	0.00	0	54	0	54	n	ENSMUSG00000042831.14	Alkbh6	chr7	protein_coding	alkB homolog 6
known_NIR_17300	chr7	30009479	30010219	+	30009479	30011265	A3SS	ENSMUST00000060834.12	known	0.12	4	29	4	29	y	0.13	7	46	7	46	y	0.02	2	92	2	92	y	0.06	2	33	2	33	y	0.16	9	49	9	49	y	0.06	3	49	3	49	y	0.15	7	40	7	40	y	0.16	9	47	9	47	y	0.07	2	28	2	28	y	0.07	3	43	3	43	y	0.13	6	41	6	41	y	0.09	4	43	4	43	y	ENSMUSG00000042831.14	Alkbh6	chr7	protein_coding	alkB homolog 6
known_NIR_17301	chr7	30011813	30011931	+	30011813	30012016	A3SS	ENSMUST00000060834.12	known	0.21	7	26	7	26	y	0.10	4	37	4	37	y	0.12	11	84	11	84	y	0.07	2	25	2	25	y	0.09	6	63	6	63	y	0.06	4	64	4	64	y	0.08	5	58	5	58	y	0.07	3	38	3	38	y	0.12	5	35	5	35	y	0.18	9	40	9	40	y	0.14	5	31	5	31	y	0.06	3	47	3	47	y	ENSMUSG00000042831.14	Alkbh6	chr7	protein_coding	alkB homolog 6
known_NIR_17302	chr7	30014825	30015655	+	30014825	30015720	A3SS	ENSMUST00000176253.8	known	0.93	13	1	13	1	n	0.96	26	1	26	1	n	0.82	9	2	9	2	y	0.91	21	2	21	2	y	1.00	33	0	33	0	n	1.00	1	0	1	0	n	0.70	7	3	7	3	y	0.91	21	2	21	2	y	1.00	12	0	12	0	n	0.96	22	1	22	1	n	0.86	6	1	6	1	n	1.00	18	0	18	0	n	ENSMUSG00000019737.15	Syne4	chr7	protein_coding	spectrin repeat containing, nuclear envelope family member 4
known_NIR_17303	chr7	30193157	30193357	+	30193282	30193357	A5SS	ENSMUST00000058280.13	known	0.03	15	471	15	471	y	0.03	13	439	13	439	y	0.11	6	47	6	47	y	0.05	27	543	27	543	y	0.07	34	457	34	457	y	0.00	0	64	0	64	n	0.03	13	432	13	432	y	0.02	2	129	2	129	y	0.04	14	367	14	367	y	0.04	23	618	23	618	y	0.03	15	430	15	430	y	0.04	24	562	24	562	y	ENSMUSG00000036892.13	Prodh2	chr7	protein_coding	proline dehydrogenase (oxidase) 2
known_NIR_17304	chr7	30193282	30193363	+	30193282	30193357	A3SS	ENSMUST00000058280.13	known	0.05	24	471	24	471	y	0.04	19	439	19	439	y	0.10	5	47	5	47	y	0.02	13	543	13	543	y	0.05	22	457	22	457	y	0.02	1	64	1	64	n	0.04	16	432	16	432	y	0.06	8	129	8	129	y	0.02	9	367	9	367	y	0.04	24	618	24	618	y	0.03	13	430	13	430	y	0.04	25	562	25	562	y	ENSMUSG00000036892.13	Prodh2	chr7	protein_coding	proline dehydrogenase (oxidase) 2
known_NIR_17305	chr7	30193553	30193720	+	30193553	30193637	A3SS	ENSMUST00000058280.13	known	0.07	22	310	22	310	y	0.04	12	296	12	296	y	0.06	2	29	2	29	y	0.05	19	355	19	355	y	0.07	24	321	24	321	y	0.03	1	35	1	35	n	0.04	12	328	12	328	y	0.00	0	95	0	95	n	0.05	17	336	17	336	y	0.07	36	474	36	474	y	0.04	18	404	18	404	y	0.05	20	370	20	370	y	ENSMUSG00000036892.13	Prodh2	chr7	protein_coding	proline dehydrogenase (oxidase) 2
known_NIR_17306	chr7	30193553	30193724	+	30193553	30193637	A3SS	ENSMUST00000058280.13	known	0.07	22	310	22	310	y	0.07	21	296	21	296	y	0.00	0	29	0	29	n	0.04	14	355	14	355	y	0.04	12	321	12	321	y	0.00	0	35	0	35	n	0.03	11	328	11	328	y	0.05	5	95	5	95	y	0.03	10	336	10	336	y	0.04	20	474	20	474	y	0.03	11	404	11	404	y	0.03	11	370	11	370	y	ENSMUSG00000036892.13	Prodh2	chr7	protein_coding	proline dehydrogenase (oxidase) 2
known_NIR_17307	chr7	30193553	30193724	+	30193553	30193720	A3SS	ENSMUST00000130839.8	known	0.50	22	22	22	22	y	0.64	21	12	21	12	y	0.00	0	2	0	2	n	0.42	14	19	14	19	y	0.33	12	24	12	24	y	0.00	0	1	0	1	n	0.48	11	12	11	12	y	1.00	5	0	5	0	n	0.37	10	17	10	17	y	0.36	20	36	20	36	y	0.38	11	18	11	18	y	0.35	11	20	11	20	y	ENSMUSG00000036892.13	Prodh2	chr7	protein_coding	proline dehydrogenase (oxidase) 2
known_NIR_17308	chr7	30206202	30207821	+	30206202	30209192	A3SS	ENSMUST00000058280.13	known	0.11	95	761	95	761	y	0.11	105	811	105	811	y	0.09	5	50	5	50	y	0.08	69	843	69	843	y	0.11	93	767	93	767	y	0.08	7	79	7	79	y	0.12	113	867	113	867	y	0.11	29	234	29	234	y	0.08	64	737	64	737	y	0.10	112	994	112	994	y	0.09	91	928	91	928	y	0.10	101	873	101	873	y	ENSMUSG00000036892.13	Prodh2	chr7	protein_coding	proline dehydrogenase (oxidase) 2
known_NIR_17309	chr7	30210648;30211894	30211737;30212235	+	30210648	30212235	cassetteExon	ENSMUST00000058280.13	known	0.00	1.5	672	0;3	672	n	0.00	0.0	755	0;0	755	n	0.00	0.0	46	0;0	46	n	0.00	3.0	655	4;2	655	y	0.00	0.0	677	0;0	677	n	0.00	0.0	44	0;0	44	n	0.00	1.0	724	2;0	724	n	0.00	0.0	187	0;0	187	n	0.00	1.0	588	0;2	588	n	0.00	1.5	915	0;3	915	n	0.00	1.0	837	0;2	837	n	0.00	2.0	747	4;0	747	n	ENSMUSG00000036892.13	Prodh2	chr7	protein_coding	proline dehydrogenase (oxidase) 2
known_NIR_17310	chr7	30239003	30239174	-	30239007	30239174	A3SS	ENSMUST00000215288.2	known	0.00	0	10	0	10	n	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.15	2	11	2	11	y	0.00	0	18	0	18	n	0.00	0	1	0	1	n	0.10	1	9	1	9	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.22	2	7	2	7	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	ENSMUSG00000036864.17	Proser3	chr7	protein_coding	proline and serine rich 3
known_NIR_17311	chr7	30252957	30253687	+	30252152	30253687	A5SS	ENSMUST00000123355.8	known	0.65	17	9	17	9	y	0.42	11	15	11	15	y	0.47	9	10	9	10	y	0.43	15	20	15	20	y	0.55	24	20	24	20	y	0.27	3	8	3	8	y	0.85	152	27	152	27	y	0.48	13	14	13	14	y	0.52	17	16	17	16	y	0.46	18	21	18	21	y	0.46	29	34	29	34	y	0.52	11	10	11	10	y	ENSMUSG00000036854.15	Hspb6	chr7	protein_coding	heat shock protein, alpha-crystallin-related, B6
known_NIR_17312	chr7	30257101	30257275	-	30257101	30257308	A5SS	ENSMUST00000043975.11	known	0.00	0	30	0	30	n	0.00	0	31	0	31	n	0.07	3	38	3	38	y	0.00	0	34	0	34	n	0.00	0	32	0	32	n	0.08	2	23	2	23	y	0.00	0	35	0	35	n	0.14	2	12	2	12	y	0.00	0	15	0	15	n	0.03	1	37	1	37	n	0.14	3	19	3	19	y	0.00	0	25	0	25	n	ENSMUSG00000036845.13	Lin37	chr7	protein_coding	lin-37 homolog (C. elegans)
known_NIR_17313	chr7	30257509	30258867	-	30257383	30258867	A3SS	ENSMUST00000043975.11	known	0.24	5	16	5	16	y	0.36	8	14	8	14	y	0.29	10	25	10	25	y	0.19	5	21	5	21	y	0.22	7	25	7	25	y	0.09	2	20	2	20	y	0.22	8	28	8	28	y	0.41	7	10	7	10	y	0.17	3	15	3	15	y	0.23	9	31	9	31	y	0.30	9	21	9	21	y	0.24	7	22	7	22	y	ENSMUSG00000036845.13	Lin37	chr7	protein_coding	lin-37 homolog (C. elegans)
known_NIR_17314	chr7	30261853	30262066	-	30261853	30262221	A5SS	ENSMUST00000207747.2	known	0.02	10	454	10	454	y	0.02	11	462	11	462	y	0.01	4	616	4	616	y	0.01	5	405	5	405	y	0.02	10	543	10	543	y	0.01	5	335	5	335	y	0.02	10	569	10	569	y	0.03	9	267	9	267	y	0.02	9	381	9	381	y	0.01	5	618	5	618	y	0.01	5	490	5	490	y	0.01	6	546	6	546	y	ENSMUSG00000036835.8	Psenen	chr7	protein_coding	presenilin enhancer gamma secretase subunit
known_NIR_17315	chr7	30262312	30262477	-	30262363	30262477	A3SS	ENSMUST00000043898.8	known	0.02	7	343	7	343	y	0.03	10	296	10	296	y	0.05	13	274	13	274	y	0.04	11	266	11	266	y	0.04	16	357	16	357	y	0.06	10	157	10	157	y	0.02	6	315	6	315	y	0.05	9	160	9	160	y	0.04	11	239	11	239	y	0.04	16	352	16	352	y	0.06	20	333	20	333	y	0.05	19	329	19	329	y	ENSMUSG00000036835.8	Psenen	chr7	protein_coding	presenilin enhancer gamma secretase subunit
known_NIR_17316	chr7	30262824	30262957	+	30262774	30262957	A5SS	ENSMUST00000166960.8	known	1.00	25	0	25	0	n	1.00	23	0	23	0	n	0.94	17	1	17	1	n	0.86	37	6	37	6	y	0.88	23	3	23	3	y	1.00	11	0	11	0	n	0.92	34	3	34	3	y	1.00	3	0	3	0	n	0.90	28	3	28	3	y	0.97	39	1	39	1	n	1.00	17	0	17	0	n	0.92	33	3	33	3	y	ENSMUSG00000078765.12	U2af1l4	chr7	protein_coding	U2 small nuclear RNA auxiliary factor 1-like 4
known_NIR_17317	chr7	30262824	30262957	+	30262824	30262982	A3SS	ENSMUST00000163848.8	known	1.00	25	0	25	0	n	0.85	23	4	23	4	y	0.77	17	5	17	5	y	0.95	37	2	37	2	y	0.96	23	1	23	1	n	0.92	11	1	11	1	n	0.92	34	3	34	3	y	0.38	3	5	3	5	n	0.85	28	5	28	5	y	0.97	39	1	39	1	n	0.81	17	4	17	4	y	0.89	33	4	33	4	y	ENSMUSG00000078765.12	U2af1l4	chr7	protein_coding	U2 small nuclear RNA auxiliary factor 1-like 4
known_NIR_17318	chr7	30262833	30262957	+	30262774	30262957	A5SS	ENSMUST00000166960.8	known	1.00	4	0	4	0	n	1.00	3	0	3	0	n	0.67	2	1	2	1	n	0.40	4	6	4	6	y	0.40	2	3	2	3	n	1.00	1	0	1	0	n	0.57	4	3	4	3	n	-	-	-	-	-	-	0.57	4	3	4	3	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.62	5	3	5	3	n	ENSMUSG00000078765.12	U2af1l4	chr7	protein_coding	U2 small nuclear RNA auxiliary factor 1-like 4
known_NIR_17319	chr7	30262833	30262957	+	30262824	30262957	A5SS	ENSMUST00000043273.16	known	0.14	4	25	4	25	y	0.12	3	23	3	23	y	0.11	2	17	2	17	y	0.10	4	37	4	37	y	0.08	2	23	2	23	y	0.08	1	11	1	11	n	0.11	4	34	4	34	y	0.00	0	3	0	3	n	0.12	4	28	4	28	y	0.03	1	39	1	39	n	0.00	0	17	0	17	n	0.13	5	33	5	33	y	ENSMUSG00000078765.12	U2af1l4	chr7	protein_coding	U2 small nuclear RNA auxiliary factor 1-like 4
known_NIR_17320	chr7	30263526	30263628	+	30263556	30263628	A5SS	ENSMUST00000166960.8	known	0.02	1	59	1	59	n	0.00	0	62	0	62	n	0.00	0	47	0	47	n	0.00	0	68	0	68	n	0.00	0	75	0	75	n	0.00	0	21	0	21	n	0.00	0	82	0	82	n	0.00	0	28	0	28	n	0.00	0	54	0	54	n	0.03	2	70	2	70	y	0.00	0	74	0	74	n	0.00	0	59	0	59	n	ENSMUSG00000078765.12	U2af1l4	chr7	protein_coding	U2 small nuclear RNA auxiliary factor 1-like 4
known_NIR_17321	chr7	30263726	30264520	+	30263726	30263899	3pMXE	ENSMUST00000163848.8	known	0.00	0	74	0	74	n	0.01	1	76	1	76	n	0.13	6	41	6	41	y	0.00	0	78	0	78	n	0.00	0	92	0	92	n	0.07	2	27	2	27	y	0.00	0	89	0	89	n	0.00	0	38	0	38	n	0.00	0	57	0	57	n	0.00	0	100	0	100	n	0.01	1	100	1	100	n	0.00	0	64	0	64	n	ENSMUSG00000078765.12	U2af1l4	chr7	protein_coding	U2 small nuclear RNA auxiliary factor 1-like 4
known_NIR_17322	chr7	30263726	30264520	+	30263726;30264032	30263899;30264520	ES	ENSMUST00000166960.8	known	0.00	0	37.0	0	74;0	n	0.02	1	40.0	1	76;4	n	0.21	6	22.0	6	41;3	y	0.00	0	40.5	0	78;3	n	0.00	0	47.5	0	92;3	n	0.11	2	15.5	2	27;4	y	0.00	0	46.5	0	89;4	n	0.00	0	20.0	0	38;2	n	0.00	0	30.0	0	57;3	n	0.00	0	53.0	0	100;6	n	0.02	1	53.0	1	100;6	n	0.00	0	33.0	0	64;2	n	ENSMUSG00000078765.12	U2af1l4	chr7	protein_coding	U2 small nuclear RNA auxiliary factor 1-like 4
known_NIR_17323	chr7	30263726	30264520	+	30264223	30264520	A5SS&ES	ENSMUST00000168555.8	known	0.00	0	53	0	53	n	0.02	1	56	1	56	n	0.14	6	36	6	36	y	0.00	0	61	0	61	n	0.00	0	53	0	53	n	0.08	2	22	2	22	y	0.00	0	70	0	70	n	0.00	0	20	0	20	n	0.00	0	42	0	42	n	0.00	0	67	0	67	n	0.01	1	66	1	66	n	0.00	0	63	0	63	n	ENSMUSG00000078765.12	U2af1l4	chr7	protein_coding	U2 small nuclear RNA auxiliary factor 1-like 4
known_NIR_17324	chr7	30263726;30264223	30263899;30264520	+	30263726	30264520	cassetteExon	ENSMUST00000167202.8	known	1.00	63.5	0	74;53	0	n	0.99	66.0	1	76;56	1	n	0.87	38.5	6	41;36	6	y	1.00	69.5	0	78;61	0	n	1.00	72.5	0	92;53	0	n	0.92	24.5	2	27;22	2	y	1.00	79.5	0	89;70	0	n	1.00	29.0	0	38;20	0	n	1.00	49.5	0	57;42	0	n	1.00	83.5	0	100;67	0	n	0.99	83.0	1	100;66	1	n	1.00	63.5	0	64;63	0	n	ENSMUSG00000078765.12	U2af1l4	chr7	protein_coding	U2 small nuclear RNA auxiliary factor 1-like 4
known_NIR_17325	chr7	30263819	30263899	+	30263726	30263899	A5SS	ENSMUST00000166960.8	known	0.00	0	74	0	74	n	0.01	1	76	1	76	n	0.00	0	41	0	41	n	0.04	3	78	3	78	y	0.00	0	92	0	92	n	0.00	0	27	0	27	n	0.00	0	89	0	89	n	0.00	0	38	0	38	n	0.00	0	57	0	57	n	0.00	0	100	0	100	n	0.02	2	100	2	100	y	0.00	0	64	0	64	n	ENSMUSG00000078765.12	U2af1l4	chr7	protein_coding	U2 small nuclear RNA auxiliary factor 1-like 4
known_NIR_17326	chr7	30264032	30264520	+	30264032	30264128	3pMXE	ENSMUST00000168229.8	known	0.00	0	89	0	89	n	0.05	4	75	4	75	y	0.10	3	28	3	28	y	0.05	3	61	3	61	y	0.04	3	75	3	75	y	0.11	4	31	4	31	y	0.04	4	101	4	101	y	0.07	2	27	2	27	y	0.05	3	58	3	58	y	0.06	6	89	6	89	y	0.07	6	82	6	82	y	0.03	2	74	2	74	y	ENSMUSG00000078765.12	U2af1l4	chr7	protein_coding	U2 small nuclear RNA auxiliary factor 1-like 4
known_NIR_17327	chr7	30264032	30264520	+	30264223	30264520	A5SS&ES	ENSMUST00000163482.8	known	0.00	0	53	0	53	n	0.07	4	56	4	56	y	0.08	3	36	3	36	y	0.05	3	61	3	61	y	0.05	3	53	3	53	y	0.15	4	22	4	22	y	0.05	4	70	4	70	y	0.09	2	20	2	20	y	0.07	3	42	3	42	y	0.08	6	67	6	67	y	0.08	6	66	6	66	y	0.03	2	63	2	63	y	ENSMUSG00000078765.12	U2af1l4	chr7	protein_coding	U2 small nuclear RNA auxiliary factor 1-like 4
known_NIR_17328	chr7	30264032;30264223	30264128;30264520	+	30264032	30264520	cassetteExon	ENSMUST00000166960.8	known	1.00	71.0	0	89;53	0	n	0.94	65.5	4	75;56	4	y	0.91	32.0	3	28;36	3	y	0.95	61.0	3	61;61	3	y	0.96	64.0	3	75;53	3	y	0.87	26.5	4	31;22	4	y	0.96	85.5	4	101;70	4	y	0.92	23.5	2	27;20	2	y	0.94	50.0	3	58;42	3	y	0.93	78.0	6	89;67	6	y	0.93	74.0	6	82;66	6	y	0.97	68.5	2	74;63	2	y	ENSMUSG00000078765.12	U2af1l4	chr7	protein_coding	U2 small nuclear RNA auxiliary factor 1-like 4
known_NIR_17329	chr7	30270266	30273385	-	30270263	30273385	A3SS	ENSMUST00000006470.14	known	0.26	8	23	8	23	y	0.07	2	25	2	25	y	0.06	2	32	2	32	y	0.00	0	27	0	27	n	0.27	11	30	11	30	y	0.13	3	20	3	20	y	0.21	9	34	9	34	y	0.23	6	20	6	20	y	0.19	4	17	4	17	y	0.10	3	28	3	28	y	0.10	2	19	2	19	y	0.24	8	26	8	26	y	ENSMUSG00000006307.17	Kmt2b	chr7	protein_coding	lysine (K)-specific methyltransferase 2B
known_NIR_17330	chr7	30276896	30277908	-	30276880	30277908	A3SS	ENSMUST00000006470.14	known	0.05	1	19	1	19	n	0.00	0	10	0	10	n	0.07	2	26	2	26	y	0.00	0	22	0	22	n	0.03	1	31	1	31	n	0.00	0	24	0	24	n	0.00	0	22	0	22	n	0.00	0	12	0	12	n	0.06	1	15	1	15	n	0.11	2	17	2	17	y	0.00	0	21	0	21	n	0.00	0	25	0	25	n	ENSMUSG00000006307.17	Kmt2b	chr7	protein_coding	lysine (K)-specific methyltransferase 2B
known_NIR_17331	chr7	30316587	30322805	-	30316587	30322840	A5SS	ENSMUST00000075738.6	known	0.00	0	1355	0	1355	n	0.00	0	1647	0	1647	n	0.00	2	1209	2	1209	y	0.00	0	1280	0	1280	n	0.00	0	1480	0	1480	n	0.00	0	837	0	837	n	0.00	0	1865	0	1865	n	0.00	0	780	0	780	n	0.00	0	1261	0	1261	n	0.00	0	2028	0	2028	n	0.00	0	1770	0	1770	n	0.00	0	1732	0	1732	n	ENSMUSG00000036751.8	Cox6b1	chr7	protein_coding	cytochrome c oxidase, subunit 6B1
known_NIR_17332	chr7	30322940	30325476	-	30322940;30324038	30323925;30325476	ES	ENSMUST00000075738.6	known	0.00	2	1714.0	2	1878;1550	y	0.00	1	1685.0	1	1837;1533	n	0.00	0	1581.5	0	1672;1491	n	0.00	0	1662.0	0	1718;1606	n	0.00	0	1838.5	0	1923;1754	n	0.00	0	908.5	0	964;853	n	0.00	4	2355.0	4	2527;2183	y	0.00	0	901.5	0	961;842	n	0.00	1	1627.5	1	1704;1551	n	0.00	2	2423.0	2	2544;2302	y	0.00	1	2039.5	1	2218;1861	n	0.00	2	2137.5	2	2242;2033	y	ENSMUSG00000036751.8	Cox6b1	chr7	protein_coding	cytochrome c oxidase, subunit 6B1
known_NIR_17333	chr7	30345409	30346985	-	30345246	30346985	A3SS	ENSMUST00000108141.2	known	0.50	54	53	54	53	y	0.57	69	52	69	52	y	0.62	83	50	83	50	y	0.58	63	46	63	46	y	0.56	68	54	68	54	y	0.74	50	18	50	18	y	0.71	65	27	65	27	y	0.62	48	29	48	29	y	0.51	41	40	41	40	y	0.59	69	47	69	47	y	0.56	49	39	49	39	y	0.58	54	39	54	39	y	ENSMUSG00000036733.17	Rbm42	chr7	protein_coding	RNA binding motif protein 42
known_NIR_17334	chr7	30356442	30356587	-	30356503	30356587	A3SS	ENSMUST00000146232.2	known	0.00	0	25	0	25	n	0.00	0	27	0	27	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.08	2	24	2	24	y	0.00	0	10	0	10	n	0.00	0	22	0	22	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	19	0	19	n	0.06	1	16	1	16	n	0.00	0	23	0	23	n	ENSMUSG00000094365.2	Gm21982	chr7	lncRNA	predicted gene 21982
known_NIR_17335	chr7	30427533	30428082	-	30427533	30427630	5pMXE	ENSMUST00000207955.2	known	0.00	0	590	0	590	n	0.00	0	670	0	670	n	0.00	0	369	0	369	n	0.00	0	555	0	555	n	0.00	2	685	2	685	y	0.00	0	286	0	286	n	0.00	0	723	0	723	n	0.00	0	284	0	284	n	0.00	0	502	0	502	n	0.00	0	728	0	728	n	0.00	0	732	0	732	n	0.00	0	675	0	675	n	ENSMUSG00000006315.10	Tmem147	chr7	protein_coding	transmembrane protein 147
known_NIR_17336	chr7	30427533	30428082	-	30427993	30428082	A3SS&ES	ENSMUST00000207296.2	known	0.00	0	458	0	458	n	0.00	0	443	0	443	n	0.00	0	301	0	301	n	0.00	0	466	0	466	n	0.00	2	588	2	588	y	0.00	0	243	0	243	n	0.00	0	622	0	622	n	0.00	0	222	0	222	n	0.00	0	400	0	400	n	0.00	0	596	0	596	n	0.00	0	525	0	525	n	0.00	0	527	0	527	n	ENSMUSG00000006315.10	Tmem147	chr7	protein_coding	transmembrane protein 147
known_NIR_17337	chr7	30427533;30427993	30427630;30428082	-	30427533	30428082	cassetteExon	ENSMUST00000208169.2	known	1.00	524.0	0	590;458	0	n	1.00	556.5	0	670;443	0	n	1.00	335.0	0	369;301	0	n	1.00	510.5	0	555;466	0	n	1.00	636.5	2	685;588	2	y	1.00	264.5	0	286;243	0	n	1.00	672.5	0	723;622	0	n	1.00	253.0	0	284;222	0	n	1.00	451.0	0	502;400	0	n	1.00	662.0	0	728;596	0	n	1.00	628.5	0	732;525	0	n	1.00	601.0	0	675;527	0	n	ENSMUSG00000006315.10	Tmem147	chr7	protein_coding	transmembrane protein 147
known_NIR_17338	chr7	30427554	30427630	-	30427533	30427630	A3SS	ENSMUST00000207955.2	known	0.00	1	590	1	590	n	0.00	0	670	0	670	n	0.00	1	369	1	369	n	0.00	2	555	2	555	y	0.00	0	685	0	685	n	0.00	0	286	0	286	n	0.01	5	723	5	723	y	0.00	0	284	0	284	n	0.00	0	502	0	502	n	0.00	0	728	0	728	n	0.00	0	732	0	732	n	0.00	0	675	0	675	n	ENSMUSG00000006315.10	Tmem147	chr7	protein_coding	transmembrane protein 147
known_NIR_17339	chr7	30427714	30427924	-	30427714	30427857	A5SS	ENSMUST00000209065.2	known	0.01	4	456	4	456	y	0.01	4	456	4	456	y	0.00	1	262	1	262	n	0.00	0	405	0	405	n	0.01	6	520	6	520	y	0.00	0	194	0	194	n	0.01	4	593	4	593	y	0.00	0	216	0	216	n	0.01	4	433	4	433	y	0.00	0	553	0	553	n	0.01	4	554	4	554	y	0.00	1	524	1	524	n	ENSMUSG00000006315.10	Tmem147	chr7	protein_coding	transmembrane protein 147
known_NIR_17340	chr7	30428166	30428627	-	30428141	30428627	A3SS	ENSMUST00000209065.2	known	0.01	3	410	3	410	y	0.01	4	385	4	385	y	0.00	1	308	1	308	n	0.01	3	419	3	419	y	0.01	4	536	4	536	y	0.00	0	217	0	217	n	0.00	0	558	0	558	n	0.01	1	185	1	185	n	0.00	1	322	1	322	n	0.01	3	516	3	516	y	0.00	0	498	0	498	n	0.00	0	472	0	472	n	ENSMUSG00000006315.10	Tmem147	chr7	protein_coding	transmembrane protein 147
known_NIR_17341	chr7	30435387	30454234	+	30435387	30436726	3pMXE	ENSMUST00000183194.2	known	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.14	2	12	2	12	y	0.00	0	6	0	6	n	0.25	3	9	3	9	y	0.00	0	6	0	6	n	0.43	3	4	3	4	n	0.00	0	6	0	6	n	0.17	2	10	2	10	y	0.12	1	7	1	7	n	ENSMUSG00000097320.9	Tmem147os	chr7	lncRNA	transmembrane protein 147, opposite strand
known_NIR_17342	chr7	30451340	30454234	+	30435387	30454234	A5SS	ENSMUST00000182488.2	known	0.00	0	1	0	1	n	1.00	2	0	2	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.73	8	3	8	3	y	1.00	2	0	2	0	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000109224.2	Tmem147os	chr7	lncRNA	transmembrane protein 147, opposite strand
known_NIR_17343	chr7	30452894	30454234	+	30451340	30454234	A5SS	ENSMUST00000182229.8	known	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.27	3	8	3	8	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000046056.16	Sbsn	chr7	protein_coding	suprabasin
known_NIR_17344	chr7	30475923	30477033	+	30475548	30477033	A5SS	ENSMUST00000165887.8	known	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	n	1.00	2	0	2	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.93	25	2	25	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	n	ENSMUSG00000060962.13	Dmkn	chr7	protein_coding	dermokine
known_NIR_17345	chr7	30488968	30489337	+	30488968	30489138	3pMXE	ENSMUST00000190480.2	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.08	2	23	2	23	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000074199.8	Krtdap	chr7	protein_coding	keratinocyte differentiation associated protein
known_NIR_17346	chr7	30488968;30489179	30489138;30489337	+	30488968	30489337	cassetteExon	ENSMUST00000189673.7	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.93	25.5	2	23;28	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000074199.8	Krtdap	chr7	protein_coding	keratinocyte differentiation associated protein
known_NIR_17347	chr7	30490040	30490345	+	30490040	30490398	A3SS	ENSMUST00000189673.7	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	18	9	18	9	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000074199.8	Krtdap	chr7	protein_coding	keratinocyte differentiation associated protein
known_NIR_17348	chr7	30654227	30655225	-	30654227	30654531	A5SS&ES	ENSMUST00000162228.9	known	0.01	2	230	2	230	y	0.01	2	219	2	219	y	0.00	1	256	1	256	n	0.00	0	224	0	224	n	0.01	3	357	3	357	y	0.00	0	136	0	136	n	0.00	0	326	0	326	n	0.00	0	154	0	154	n	0.00	1	223	1	223	n	0.00	0	325	0	325	n	0.01	3	262	3	262	y	0.00	0	287	0	287	n	ENSMUSG00000058239.14	Usf2	chr7	protein_coding	upstream transcription factor 2
known_NIR_17349	chr7	30654227;30654865	30654531;30655225	-	30654227	30655225	cassetteExon	ENSMUST00000166340.2	known	0.99	165.5	2	230;101	2	y	0.99	140.5	2	219;62	2	y	0.99	194.5	1	256;133	1	n	1.00	161.0	0	224;98	0	n	0.99	253.0	3	357;149	3	y	1.00	91.5	0	136;47	0	n	1.00	225.0	0	326;124	0	n	1.00	96.0	0	154;38	0	n	0.99	156.0	1	223;89	1	n	1.00	235.0	0	325;145	0	n	0.98	187.5	3	262;113	3	y	1.00	206.0	0	287;125	0	n	ENSMUSG00000058239.14	Usf2	chr7	protein_coding	upstream transcription factor 2
known_NIR_17350	chr7	30654227;30655425	30655225;30655574	-	30654227;30654865	30654531;30655574	MXE	ENSMUST00000167285.8	known	0.26	41.5	117.5	2;81	230;5	y	0.26	41.0	114.0	2;80	219;9	y	0.31	59.5	133.5	1;118	256;11	n	0.30	49.5	116.0	0;99	224;8	n	0.30	80.5	186.0	3;158	357;15	y	0.31	32.5	72.0	0;65	136;8	n	0.27	61.0	169.0	0;122	326;12	n	0.34	39.5	77.5	0;79	154;1	n	0.21	29.5	114.0	1;58	223;5	n	0.28	66.0	173.5	0;132	325;22	n	0.24	44.0	136.5	3;85	262;11	y	0.25	50.0	149.0	0;100	287;11	n	ENSMUSG00000058239.14	Usf2	chr7	protein_coding	upstream transcription factor 2
known_NIR_17351	chr7	30654865	30655306	-	30654865	30655225	A5SS	ENSMUST00000058860.14	known	0.06	7	101	7	101	y	0.03	2	62	2	62	y	0.07	10	133	10	133	y	0.06	6	98	6	98	y	0.09	14	149	14	149	y	0.02	1	47	1	47	n	0.08	11	124	11	124	y	0.10	4	38	4	38	y	0.06	6	89	6	89	y	0.04	6	145	6	145	y	0.07	9	113	9	113	y	0.07	9	125	9	125	y	ENSMUSG00000058239.14	Usf2	chr7	protein_coding	upstream transcription factor 2
known_NIR_17352	chr7	30654865	30655574	-	30654865;30655425	30655225;30655574	ES	ENSMUST00000058860.14	known	0.05	5	91.0	5	101;81	y	0.11	9	71.0	9	62;80	y	0.08	11	125.5	11	133;118	y	0.08	8	98.5	8	98;99	y	0.09	15	153.5	15	149;158	y	0.12	8	56.0	8	47;65	y	0.09	12	123.0	12	124;122	y	0.02	1	58.5	1	38;79	n	0.06	5	73.5	5	89;58	y	0.14	22	138.5	22	145;132	y	0.10	11	99.0	11	113;85	y	0.09	11	112.5	11	125;100	y	ENSMUSG00000058239.14	Usf2	chr7	protein_coding	upstream transcription factor 2
known_NIR_17353	chr7	30654865	30655574	-	30655425	30655574	3pMXE	ENSMUST00000168731.2	known	0.06	5	81	5	81	y	0.10	9	80	9	80	y	0.09	11	118	11	118	y	0.07	8	99	8	99	y	0.09	15	158	15	158	y	0.11	8	65	8	65	y	0.09	12	122	12	122	y	0.01	1	79	1	79	n	0.08	5	58	5	58	y	0.14	22	132	22	132	y	0.11	11	85	11	85	y	0.10	11	100	11	100	y	ENSMUSG00000058239.14	Usf2	chr7	protein_coding	upstream transcription factor 2
known_NIR_17354	chr7	30654865;30655425	30655306;30655574	-	30654865	30655574	cassetteExon	ENSMUST00000167285.8	known	0.90	44.0	5	7;81	5	y	0.82	41.0	9	2;80	9	y	0.85	64.0	11	10;118	11	y	0.87	52.5	8	6;99	8	y	0.85	86.0	15	14;158	15	y	0.80	33.0	8	1;65	8	n	0.85	66.5	12	11;122	12	y	0.98	41.5	1	4;79	1	n	0.86	32.0	5	6;58	5	y	0.76	69.0	22	6;132	22	y	0.81	47.0	11	9;85	11	y	0.83	54.5	11	9;100	11	y	ENSMUSG00000058239.14	Usf2	chr7	protein_coding	upstream transcription factor 2
known_NIR_17355	chr7	30655692	30656121	-	30655692	30655807	5pMXE	ENSMUST00000168731.2	known	0.06	4	66	4	66	y	0.05	3	60	3	60	y	0.07	5	71	5	71	y	0.04	3	71	3	71	y	0.08	9	99	9	99	y	0.02	1	42	1	42	n	0.05	4	78	4	78	y	0.08	4	48	4	48	y	0.09	5	49	5	49	y	0.03	3	91	3	91	y	0.08	4	46	4	46	y	0.03	2	78	2	78	y	ENSMUSG00000058239.14	Usf2	chr7	protein_coding	upstream transcription factor 2
known_NIR_17356	chr7	30655692	30656121	-	30655692;30655853	30655807;30656121	ES	ENSMUST00000058860.14	known	0.07	4	54.0	4	66;42	y	0.06	3	44.5	3	60;29	y	0.08	5	55.5	5	71;40	y	0.05	3	59.0	3	71;47	y	0.10	9	79.5	9	99;60	y	0.03	1	35.0	1	42;28	n	0.06	4	58.5	4	78;39	y	0.09	4	40.5	4	48;33	y	0.12	5	37.0	5	49;25	y	0.04	3	74.5	3	91;58	y	0.09	4	40.0	4	46;34	y	0.03	2	61.0	2	78;44	y	ENSMUSG00000058239.14	Usf2	chr7	protein_coding	upstream transcription factor 2
known_NIR_17357	chr7	30658739	30665394	-	30658739	30661523	A5SS&ES	ENSMUST00000147431.2	known	0.04	15	411	15	411	y	0.04	14	346	14	346	y	0.02	11	503	11	503	y	0.04	17	468	17	468	y	0.05	31	655	31	655	y	0.03	12	341	12	341	y	0.07	40	548	40	548	y	0.04	14	317	14	317	y	0.04	14	354	14	354	y	0.03	16	472	16	472	y	0.03	14	411	14	411	y	0.03	13	497	13	497	y	ENSMUSG00000001247.17	Lsr	chr7	protein_coding	lipolysis stimulated lipoprotein receptor
known_NIR_17358	chr7	30658739;30661546	30661523;30672505	-	30658739;30671637	30665394;30672505	MXE	ENSMUST00000098553.11	known	0.53	205.5	179.0	411;0	15;343	n	0.59	174.0	119.0	346;2	14;224	y	0.51	251.5	237.5	503;0	11;464	n	0.52	234.0	215.5	468;0	17;414	n	0.52	327.5	298.5	655;0	31;566	n	0.54	170.5	145.0	341;0	12;278	n	0.55	274.0	225.5	548;0	40;411	n	0.50	158.5	157.5	317;0	14;301	n	0.55	177.0	144.0	354;0	14;274	n	0.53	236.0	210.0	472;0	16;404	n	0.59	205.5	142.5	411;0	14;271	n	0.54	248.5	212.5	497;0	13;412	n	ENSMUSG00000001247.17	Lsr	chr7	protein_coding	lipolysis stimulated lipoprotein receptor
known_NIR_17359	chr7	30658739;30661669	30661523;30665394	-	30658739	30665394	cassetteExon	ENSMUST00000098553.11	known	0.96	371.0	15	411;331	15	y	0.96	330.5	14	346;315	14	y	0.98	469.5	11	503;436	11	y	0.96	409.5	17	468;351	17	y	0.95	626.5	31	655;598	31	y	0.96	302.0	12	341;263	12	y	0.92	474.0	40	548;400	40	y	0.95	296.5	14	317;276	14	y	0.96	302.0	14	354;250	14	y	0.96	412.0	16	472;352	16	y	0.96	343.5	14	411;276	14	y	0.97	432.5	13	497;368	13	y	ENSMUSG00000001247.17	Lsr	chr7	protein_coding	lipolysis stimulated lipoprotein receptor
known_NIR_17360	chr7	30661546	30672505	-	30671637	30672505	A3SS&ES	ENSMUST00000001279.15	known	0.00	0	343	0	343	n	0.01	2	224	2	224	y	0.00	0	464	0	464	n	0.00	0	414	0	414	n	0.00	0	566	0	566	n	0.00	0	278	0	278	n	0.00	0	411	0	411	n	0.00	0	301	0	301	n	0.00	0	274	0	274	n	0.00	0	404	0	404	n	0.00	0	271	0	271	n	0.00	0	412	0	412	n	ENSMUSG00000001247.17	Lsr	chr7	protein_coding	lipolysis stimulated lipoprotein receptor
known_NIR_17361	chr7	30661669	30665394	-	30661669;30662292	30662236;30665394	ES	ENSMUST00000001279.15	known	0.62	331	199.0	331	206;192	y	0.74	315	111.0	315	107;115	y	0.70	436	187.0	436	192;182	y	0.67	351	172.0	351	162;182	y	0.69	598	268.0	598	272;264	y	0.61	263	165.5	263	164;167	y	0.67	400	195.5	400	196;195	y	0.69	276	121.5	276	106;137	y	0.66	250	126.0	250	142;110	y	0.70	352	148.5	352	152;145	y	0.65	276	145.5	276	135;156	y	0.68	368	172.0	368	159;185	y	ENSMUSG00000001247.17	Lsr	chr7	protein_coding	lipolysis stimulated lipoprotein receptor
known_NIR_17362	chr7	30662292	30665394	-	30658739	30665394	A3SS	ENSMUST00000098553.11	known	0.93	192	15	192	15	y	0.89	115	14	115	14	y	0.94	182	11	182	11	y	0.91	182	17	182	17	y	0.89	264	31	264	31	y	0.93	167	12	167	12	y	0.83	195	40	195	40	y	0.91	137	14	137	14	y	0.89	110	14	110	14	y	0.90	145	16	145	16	y	0.92	156	14	156	14	y	0.93	185	13	185	13	y	ENSMUSG00000001247.17	Lsr	chr7	protein_coding	lipolysis stimulated lipoprotein receptor
known_NIR_17363	chr7	30677205	30688405	+	30673700	30688405	A5SS	ENSMUST00000129773.2	known	0.00	0	24	0	24	n	0.00	0	36	0	36	n	0.00	0	144	0	144	n	0.00	0	21	0	21	n	0.00	0	54	0	54	n	0.00	0	105	0	105	n	0.00	0	37	0	37	n	0.00	0	59	0	59	n	0.00	0	19	0	19	n	0.07	2	25	2	25	y	0.00	0	18	0	18	n	0.03	1	32	1	32	n	ENSMUSG00000046826.8	Fam187b	chr7	protein_coding	family with sequence similarity 187, member B
known_NIR_17364	chr7	30737356	30738463	-	30737353	30738463	A3SS	ENSMUST00000161805.8	known	0.29	5	12	5	12	y	0.35	7	13	7	13	y	0.31	10	22	10	22	y	0.18	2	9	2	9	y	0.23	9	30	9	30	y	0.33	5	10	5	10	y	0.20	8	33	8	33	y	0.00	0	11	0	11	n	0.35	6	11	6	11	y	0.31	4	9	4	9	y	0.00	0	9	0	9	n	0.20	3	12	3	12	y	ENSMUSG00000009687.15	Fxyd5	chr7	protein_coding	FXYD domain-containing ion transport regulator 5
known_NIR_17365	chr7	30739697	30740822	-	30739682	30740822	A3SS	ENSMUST00000161805.8	known	0.00	0	14	0	14	n	0.12	2	14	2	14	y	0.03	1	31	1	31	n	0.00	0	3	0	3	n	0.00	0	23	0	23	n	0.00	0	18	0	18	n	0.00	0	31	0	31	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	18	0	18	n	0.00	0	17	0	17	n	0.00	0	10	0	10	n	ENSMUSG00000009687.15	Fxyd5	chr7	protein_coding	FXYD domain-containing ion transport regulator 5
known_NIR_17366	chr7	30740894	30741515	-	30740882	30741515	A3SS	ENSMUST00000161684.8	known	0.25	2	6	2	6	n	0.08	1	11	1	11	n	0.43	6	8	6	8	y	0.67	2	1	2	1	n	0.20	2	8	2	8	y	0.17	1	5	1	5	n	0.20	4	16	4	16	y	0.00	0	3	0	3	n	0.12	1	7	1	7	n	0.25	2	6	2	6	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	ENSMUSG00000009687.15	Fxyd5	chr7	protein_coding	FXYD domain-containing ion transport regulator 5
known_NIR_17367	chr7	30751205	30751358	-	30751240	30751358	A3SS	ENSMUST00000206328.2	known	0.08	75	895	75	895	y	0.08	94	1131	94	1131	y	0.07	43	541	43	541	y	0.07	57	801	57	801	y	0.07	81	1019	81	1019	y	0.09	40	401	40	401	y	0.08	95	1098	95	1098	y	0.05	29	503	29	503	y	0.08	73	805	73	805	y	0.07	98	1261	98	1261	y	0.09	106	1091	106	1091	y	0.09	119	1185	119	1185	y	ENSMUSG00000036570.15	Fxyd1	chr7	protein_coding	FXYD domain-containing ion transport regulator 1
known_NIR_17368	chr7	30752486	30753318	-	30752486	30752825	5pMXE	ENSMUST00000205917.2	known	0.04	48	1265	48	1265	y	0.04	58	1514	58	1514	y	0.04	31	720	31	720	y	0.04	45	1129	45	1129	y	0.03	50	1393	50	1393	y	0.04	20	491	20	491	y	0.03	48	1587	48	1587	y	0.04	26	630	26	630	y	0.03	37	1111	37	1111	y	0.03	49	1772	49	1772	y	0.03	39	1447	39	1447	y	0.04	62	1480	62	1480	y	ENSMUSG00000036570.15	Fxyd1	chr7	protein_coding	FXYD domain-containing ion transport regulator 1
known_NIR_17369	chr7	30752486	30753318	-	30752486;30752899	30752825;30753318	ES	ENSMUST00000206328.2	known	0.04	48	1261.0	48	1265;1257	y	0.04	58	1518.5	58	1514;1523	y	0.04	31	730.0	31	720;740	y	0.04	45	1173.5	45	1129;1218	y	0.03	50	1410.5	50	1393;1428	y	0.04	20	522.5	20	491;554	y	0.03	48	1641.5	48	1587;1696	y	0.04	26	678.0	26	630;726	y	0.03	37	1126.0	37	1111;1141	y	0.03	49	1819.0	49	1772;1866	y	0.03	39	1509.0	39	1447;1571	y	0.04	62	1532.0	62	1480;1584	y	ENSMUSG00000036570.15	Fxyd1	chr7	protein_coding	FXYD domain-containing ion transport regulator 1
known_NIR_17370	chr7	30753795	30754098	-	30753795	30754190	A5SS	ENSMUST00000205778.2	known	0.18	15	70	15	70	y	0.09	6	63	6	63	y	0.11	7	57	7	57	y	0.03	2	60	2	60	y	0.05	6	106	6	106	y	0.03	1	38	1	38	n	0.10	10	94	10	94	y	0.17	8	39	8	39	y	0.11	6	48	6	48	y	0.09	6	62	6	62	y	0.17	10	48	10	48	y	0.11	7	57	7	57	y	ENSMUSG00000036570.15	Fxyd1	chr7	protein_coding	FXYD domain-containing ion transport regulator 1
known_NIR_17371	chr7	30753795	30754098	-	30753795	30754743	A5SS	ENSMUST00000206328.2	known	0.28	15	38	15	38	y	0.13	6	40	6	40	y	0.24	7	22	7	22	y	0.05	2	38	2	38	y	0.12	6	43	6	43	y	0.07	1	13	1	13	n	0.17	10	50	10	50	y	0.36	8	14	8	14	y	0.15	6	33	6	33	y	0.10	6	56	6	56	y	0.21	10	37	10	37	y	0.12	7	51	7	51	y	ENSMUSG00000036570.15	Fxyd1	chr7	protein_coding	FXYD domain-containing ion transport regulator 1
known_NIR_17372	chr7	30753795	30754098	-	30753795	30754976	A5SS	ENSMUST00000205807.2	known	0.03	15	539	15	539	y	0.01	6	726	6	726	y	0.02	7	320	7	320	y	0.00	2	553	2	553	y	0.01	6	686	6	686	y	0.00	1	258	1	258	n	0.01	10	720	10	720	y	0.02	8	375	8	375	y	0.01	6	598	6	598	y	0.01	6	890	6	890	y	0.01	10	844	10	844	y	0.01	7	755	7	755	y	ENSMUSG00000036570.15	Fxyd1	chr7	protein_coding	FXYD domain-containing ion transport regulator 1
known_NIR_17373	chr7	30753795	30754190	-	30753795	30754743	A5SS	ENSMUST00000206328.2	known	0.65	70	38	70	38	y	0.61	63	40	63	40	y	0.72	57	22	57	22	y	0.61	60	38	60	38	y	0.71	106	43	106	43	y	0.75	38	13	38	13	y	0.65	94	50	94	50	y	0.74	39	14	39	14	y	0.59	48	33	48	33	y	0.53	62	56	62	56	y	0.56	48	37	48	37	y	0.53	57	51	57	51	y	ENSMUSG00000036570.15	Fxyd1	chr7	protein_coding	FXYD domain-containing ion transport regulator 1
known_NIR_17374	chr7	30753795	30754190	-	30753795	30754976	A5SS	ENSMUST00000205807.2	known	0.11	70	539	70	539	y	0.08	63	726	63	726	y	0.15	57	320	57	320	y	0.10	60	553	60	553	y	0.13	106	686	106	686	y	0.13	38	258	38	258	y	0.12	94	720	94	720	y	0.09	39	375	39	375	y	0.07	48	598	48	598	y	0.07	62	890	62	890	y	0.05	48	844	48	844	y	0.07	57	755	57	755	y	ENSMUSG00000036570.15	Fxyd1	chr7	protein_coding	FXYD domain-containing ion transport regulator 1
known_NIR_17375	chr7	30753795	30754976	-	30753795	30754743	5pMXE	ENSMUST00000206328.2	known	0.93	539	38	539	38	y	0.95	726	40	726	40	y	0.94	320	22	320	22	y	0.94	553	38	553	38	y	0.94	686	43	686	43	y	0.95	258	13	258	13	y	0.94	720	50	720	50	y	0.96	375	14	375	14	y	0.95	598	33	598	33	y	0.94	890	56	890	56	y	0.96	844	37	844	37	y	0.94	755	51	755	51	y	ENSMUSG00000036570.15	Fxyd1	chr7	protein_coding	FXYD domain-containing ion transport regulator 1
known_NIR_17376	chr7	30753795	30756225	-	30753795	30754098	5pMXE	ENSMUST00000206860.2	known	0.42	11	15	11	15	y	0.75	18	6	18	6	y	0.70	16	7	16	7	y	0.82	9	2	9	2	y	0.81	25	6	25	6	y	0.96	24	1	24	1	n	0.76	32	10	32	10	y	0.73	22	8	22	8	y	0.67	12	6	12	6	y	0.79	23	6	23	6	y	0.68	21	10	21	10	y	0.70	16	7	16	7	y	ENSMUSG00000036570.15	Fxyd1	chr7	protein_coding	FXYD domain-containing ion transport regulator 1
known_NIR_17377	chr7	30753795	30756225	-	30753795	30754190	5pMXE	ENSMUST00000205778.2	known	0.14	11	70	11	70	y	0.22	18	63	18	63	y	0.22	16	57	16	57	y	0.13	9	60	9	60	y	0.19	25	106	25	106	y	0.39	24	38	24	38	y	0.25	32	94	32	94	y	0.36	22	39	22	39	y	0.20	12	48	12	48	y	0.27	23	62	23	62	y	0.30	21	48	21	48	y	0.22	16	57	16	57	y	ENSMUSG00000036570.15	Fxyd1	chr7	protein_coding	FXYD domain-containing ion transport regulator 1
known_NIR_17378	chr7	30753795	30756225	-	30753795	30754743	5pMXE	ENSMUST00000206328.2	known	0.22	11	38	11	38	y	0.31	18	40	18	40	y	0.42	16	22	16	22	y	0.19	9	38	9	38	y	0.37	25	43	25	43	y	0.65	24	13	24	13	y	0.39	32	50	32	50	y	0.61	22	14	22	14	y	0.27	12	33	12	33	y	0.29	23	56	23	56	y	0.36	21	37	21	37	y	0.24	16	51	16	51	y	ENSMUSG00000036570.15	Fxyd1	chr7	protein_coding	FXYD domain-containing ion transport regulator 1
known_NIR_17379	chr7	30753795	30756225	-	30753795	30754976	5pMXE	ENSMUST00000205807.2	known	0.02	11	539	11	539	y	0.02	18	726	18	726	y	0.05	16	320	16	320	y	0.02	9	553	9	553	y	0.04	25	686	25	686	y	0.09	24	258	24	258	y	0.04	32	720	32	720	y	0.06	22	375	22	375	y	0.02	12	598	12	598	y	0.03	23	890	23	890	y	0.02	21	844	21	844	y	0.02	16	755	16	755	y	ENSMUSG00000036570.15	Fxyd1	chr7	protein_coding	FXYD domain-containing ion transport regulator 1
known_NIR_17380	chr7	30753859	30754190	-	30753795	30754190	A3SS	ENSMUST00000205778.2	known	0.10	8	70	8	70	y	0.03	2	63	2	63	y	0.03	2	57	2	57	y	0.12	8	60	8	60	y	0.07	8	106	8	106	y	0.07	3	38	3	38	y	0.11	12	94	12	94	y	0.09	4	39	4	39	y	0.04	2	48	2	48	y	0.07	5	62	5	62	y	0.14	8	48	8	48	y	0.05	3	57	3	57	y	ENSMUSG00000036570.15	Fxyd1	chr7	protein_coding	FXYD domain-containing ion transport regulator 1
known_NIR_17381	chr7	30753859	30754190	-	30753859	30754976	A5SS	ENSMUST00000039909.13	known	0.12	8	58	8	58	y	0.03	2	60	2	60	y	0.08	2	24	2	24	y	0.16	8	42	8	42	y	0.12	8	60	8	60	y	0.10	3	28	3	28	y	0.17	12	59	12	59	y	0.12	4	28	4	28	y	0.03	2	57	2	57	y	0.07	5	62	5	62	y	0.11	8	63	8	63	y	0.06	3	47	3	47	y	ENSMUSG00000036570.15	Fxyd1	chr7	protein_coding	FXYD domain-containing ion transport regulator 1
known_NIR_17382	chr7	30753859	30754976	-	30753795	30754976	A3SS	ENSMUST00000205807.2	known	0.10	58	539	58	539	y	0.08	60	726	60	726	y	0.07	24	320	24	320	y	0.07	42	553	42	553	y	0.08	60	686	60	686	y	0.10	28	258	28	258	y	0.08	59	720	59	720	y	0.07	28	375	28	375	y	0.09	57	598	57	598	y	0.07	62	890	62	890	y	0.07	63	844	63	844	y	0.06	47	755	47	755	y	ENSMUSG00000036570.15	Fxyd1	chr7	protein_coding	FXYD domain-containing ion transport regulator 1
known_NIR_17383	chr7	30798333	30798640	-	30798498	30798640	A3SS	ENSMUST00000039435.15	known	0.00	2	1914	2	1914	y	0.00	0	1875	0	1875	n	0.00	4	1185	4	1185	y	0.00	0	1569	0	1569	n	0.00	0	2342	0	2342	n	0.00	0	868	0	868	n	0.00	0	2272	0	2272	n	0.00	0	1007	0	1007	n	0.00	0	1503	0	1503	n	0.00	3	2277	3	2277	y	0.00	0	1812	0	1812	n	0.00	0	2012	0	2012	n	ENSMUSG00000001249.15	Hpn	chr7	protein_coding	hepsin
known_NIR_17384	chr7	30798555	30798640	-	30798333	30798640	A3SS	ENSMUST00000171259.2	known	0.71	5	2	5	2	n	1.00	4	0	4	0	n	0.50	4	4	4	4	n	1.00	5	0	5	0	n	1.00	5	0	5	0	n	1.00	9	0	9	0	n	1.00	6	0	6	0	n	1.00	4	0	4	0	n	1.00	4	0	4	0	n	0.70	7	3	7	3	y	1.00	11	0	11	0	n	1.00	7	0	7	0	n	ENSMUSG00000001249.15	Hpn	chr7	protein_coding	hepsin
known_NIR_17385	chr7	30798555	30798640	-	30798498	30798640	A3SS	ENSMUST00000039435.15	known	0.00	5	1914	5	1914	y	0.00	4	1875	4	1875	y	0.00	4	1185	4	1185	y	0.00	5	1569	5	1569	y	0.00	5	2342	5	2342	y	0.01	9	868	9	868	y	0.00	6	2272	6	2272	y	0.00	4	1007	4	1007	y	0.00	4	1503	4	1503	y	0.00	7	2277	7	2277	y	0.01	11	1812	11	1812	y	0.00	7	2012	7	2012	y	ENSMUSG00000001249.15	Hpn	chr7	protein_coding	hepsin
known_NIR_17386	chr7	30808617;30810198	30810139;30814103	-	30808617	30814103	cassetteExon	ENSMUST00000165124.8	known	0.70	557.5	243	581;534	243	y	0.72	564.0	223	580;548	223	y	0.71	447.5	181	453;442	181	y	0.73	736.0	272	755;717	272	y	0.74	944.0	325	980;908	325	y	0.78	407.0	118	438;376	118	y	0.70	790.0	338	802;778	338	y	0.74	431.5	154	453;410	154	y	0.73	572.5	210	587;558	210	y	0.66	814.5	428	829;800	428	y	0.69	589.0	264	624;554	264	y	0.67	703.5	343	735;672	343	y	ENSMUSG00000001249.15	Hpn	chr7	protein_coding	hepsin
known_NIR_17387	chr7	30810198	30814103	-	30810198	30810288	5pMXE	ENSMUST00000039435.15	known	1.00	534	0	534	0	n	1.00	548	0	548	0	n	1.00	442	0	442	0	n	0.99	717	4	717	4	y	1.00	908	1	908	1	n	1.00	376	0	376	0	n	1.00	778	3	778	3	y	1.00	410	0	410	0	n	0.99	558	4	558	4	y	1.00	800	4	800	4	y	0.99	554	5	554	5	y	1.00	672	0	672	0	n	ENSMUSG00000001249.15	Hpn	chr7	protein_coding	hepsin
known_NIR_17388	chr7	30833942	30835022	-	30833942	30834951	A5SS	ENSMUST00000186634.7	known	1.00	13	0	13	0	n	0.83	15	3	15	3	y	0.67	4	2	4	2	n	1.00	8	0	8	0	n	0.93	14	1	14	1	n	1.00	4	0	4	0	n	1.00	22	0	22	0	n	1.00	5	0	5	0	n	0.90	9	1	9	1	n	1.00	6	0	6	0	n	0.83	5	1	5	1	n	0.90	9	1	9	1	n	ENSMUSG00000001248.16	Gramd1a	chr7	protein_coding	GRAM domain containing 1A
known_NIR_17389	chr7	30833942	30835133	-	30833942	30835022	A5SS	ENSMUST00000001280.14	known	0.00	0	13	0	13	n	0.12	2	15	2	15	y	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.00	0	4	0	4	n	0.00	0	22	0	22	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	ENSMUSG00000001248.16	Gramd1a	chr7	protein_coding	GRAM domain containing 1A
known_NIR_17390	chr7	30843298	30851262	-	30843298	30850321	5pMXE	ENSMUST00000185985.7	known	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	16	0	16	n	0.12	2	15	2	15	y	0.00	0	18	0	18	n	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.00	0	12	0	12	n	ENSMUSG00000001248.16	Gramd1a	chr7	protein_coding	GRAM domain containing 1A
known_NIR_17391	chr7	30843298	30854292	-	30843298	30850321	5pMXE	ENSMUST00000185985.7	known	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	16	0	16	n	0.00	0	15	0	15	n	0.05	1	18	1	18	n	0.12	2	14	2	14	y	0.21	3	11	3	11	y	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.00	0	12	0	12	n	ENSMUSG00000001248.16	Gramd1a	chr7	protein_coding	GRAM domain containing 1A
known_NIR_17392	chr7	3339155	3341728	+	3337850	3341728	A5SS	ENSMUST00000203328.4	known	0.60	3	2	3	2	n	1.00	3	0	3	0	n	0.58	7	5	7	5	y	0.11	1	8	1	8	n	0.88	7	1	7	1	n	0.50	3	3	3	3	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	3	0	3	0	n	1.00	2	0	2	0	n	0.80	4	1	4	1	n	ENSMUSG00000068566.14	Myadm	chr7	protein_coding	myeloid-associated differentiation marker
known_NIR_17393	chr7	3339317	3341728	+	3339155	3341728	A5SS	ENSMUST00000096744.8	known	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.30	3	7	3	7	y	0.50	1	1	1	1	n	0.36	4	7	4	7	y	0.25	1	3	1	3	n	0.86	6	1	6	1	n	1.00	3	0	3	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	ENSMUSG00000068566.14	Myadm	chr7	protein_coding	myeloid-associated differentiation marker
known_NIR_17394	chr7	33840891;33841277	33841228;33842163	-	33840891	33842163	cassetteExon	ENSMUST00000102746.11	known	0.03	2.0	68	2;2	68	y	0.09	5.0	53	6;4	53	y	0.00	0.0	98	0;0	98	n	0.03	1.0	38	1;1	38	n	0.02	1.5	91	2;1	91	n	0.01	0.5	43	0;1	43	n	0.04	3.5	87	4;3	87	y	0.00	0.0	44	0;0	44	n	0.13	4.5	31	6;3	31	y	0.01	1.0	70	1;1	70	n	0.00	0.0	68	0;0	68	n	0.06	6.0	87	6;6	87	y	ENSMUSG00000052997.16	Uba2	chr7	protein_coding	ubiquitin-like modifier activating enzyme 2
known_NIR_17395	chr7	33855409	33857404	-	33855409	33856668	5pMXE	ENSMUST00000139916.2	known	0.00	0	45	0	45	n	0.03	1	31	1	31	n	0.00	0	81	0	81	n	0.02	1	44	1	44	n	0.00	0	76	0	76	n	0.00	0	30	0	30	n	0.02	1	47	1	47	n	0.00	0	49	0	49	n	0.00	0	45	0	45	n	0.00	0	38	0	38	n	0.00	0	42	0	42	n	0.04	2	46	2	46	y	ENSMUSG00000052997.16	Uba2	chr7	protein_coding	ubiquitin-like modifier activating enzyme 2
known_NIR_17396	chr7	33855409	33857404	-	33855409;33856789	33856668;33857404	ES	ENSMUST00000102746.11	known	0.00	0	47.5	0	45;50	n	0.03	1	28.5	1	31;26	n	0.00	0	75.0	0	81;69	n	0.02	1	45.0	1	44;46	n	0.00	0	70.0	0	76;64	n	0.00	0	35.0	0	30;40	n	0.02	1	47.5	1	47;48	n	0.00	0	42.5	0	49;36	n	0.00	0	46.0	0	45;47	n	0.00	0	50.0	0	38;62	n	0.00	0	46.0	0	42;50	n	0.04	2	48.5	2	46;51	y	ENSMUSG00000052997.16	Uba2	chr7	protein_coding	ubiquitin-like modifier activating enzyme 2
known_NIR_17397	chr7	33884236	33888774	-	33884236;33885867	33885719;33888774	ES	ENSMUST00000002710.10	known	0.00	0	38.0	0	48;28	n	0.03	1	36.0	1	40;32	n	0.09	4	39.5	4	47;32	y	0.00	0	36.5	0	41;32	n	0.02	1	44.0	1	51;37	n	0.00	0	20.0	0	22;18	n	0.04	2	46.0	2	57;35	y	0.00	0	17.5	0	15;20	n	0.02	1	39.5	1	38;41	n	0.03	2	62.5	2	62;63	y	0.02	1	50.0	1	60;40	n	0.02	1	57.0	1	56;58	n	ENSMUSG00000002635.12	Pdcd2l	chr7	protein_coding	programmed cell death 2-like
known_NIR_17398	chr7	33928798	33928965	-	33928798	33929517	A5SS	ENSMUST00000038027.6	known	0.00	0	237	0	237	n	0.00	0	164	0	164	n	0.01	2	329	2	329	y	0.00	0	289	0	289	n	0.00	0	328	0	328	n	0.00	0	117	0	117	n	0.00	0	319	0	319	n	0.00	0	123	0	123	n	0.00	0	179	0	179	n	0.00	1	300	1	300	n	0.00	0	249	0	249	n	0.00	0	303	0	303	n	ENSMUSG00000036427.6	Gpi1	chr7	protein_coding	glucose-6-phosphate isomerase 1
known_NIR_17399	chr7	33940065	33941665	-	33940071	33941665	A3SS	ENSMUST00000108074.8	known	0.18	2	9	2	9	y	0.00	0	8	0	8	n	0.00	0	19	0	19	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.04	1	23	1	23	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.15	2	11	2	11	y	0.00	0	19	0	19	n	ENSMUSG00000066571.14	Garre1	chr7	protein_coding	granule associated Rac and RHOG effector 1
known_NIR_17400	chr7	34045383	34050711	-	34045383;34047407	34047351;34050711	ES	ENSMUST00000085585.12	known	0.13	9	60.5	9	58;63	y	0.05	3	57.0	3	61;53	y	0.28	33	83.5	33	86;81	y	0.13	10	69.0	10	65;73	y	0.15	14	79.5	14	79;80	y	0.24	13	41.0	13	41;41	y	0.13	14	97.0	14	108;86	y	0.18	9	42.0	9	40;44	y	0.15	9	52.0	9	51;53	y	0.21	22	82.0	22	88;76	y	0.11	7	59.0	7	51;67	y	0.15	10	56.5	10	50;63	y	ENSMUSG00000066568.13	Lsm14a	chr7	protein_coding	LSM14A mRNA processing body assembly factor
known_NIR_17401	chr7	34050942	34052803	-	34050942	34052815	A5SS	ENSMUST00000085585.12	known	0.00	0	65	0	65	n	0.03	2	57	2	57	y	0.02	2	84	2	84	y	0.01	1	79	1	79	n	0.03	2	76	2	76	y	0.02	1	41	1	41	n	0.00	0	89	0	89	n	0.02	1	52	1	52	n	0.00	0	76	0	76	n	0.00	0	88	0	88	n	0.00	0	77	0	77	n	0.00	0	82	0	82	n	ENSMUSG00000066568.13	Lsm14a	chr7	protein_coding	LSM14A mRNA processing body assembly factor
known_NIR_17402	chr7	34056921	34065040	-	34056921;34057367	34057191;34065040	ES	ENSMUST00000085585.12	known	0.14	7	42.0	7	36;48	y	0.16	6	32.5	6	34;31	y	0.29	28	70.0	28	78;62	y	0.24	16	50.5	16	53;48	y	0.19	18	76.5	18	68;85	y	0.37	16	27.5	16	23;32	y	0.22	19	66.5	19	64;69	y	0.33	16	32.5	16	26;39	y	0.25	12	36.5	12	39;34	y	0.26	18	52.0	18	54;50	y	0.36	22	38.5	22	30;47	y	0.31	24	54.0	24	53;55	y	ENSMUSG00000066568.13	Lsm14a	chr7	protein_coding	LSM14A mRNA processing body assembly factor
known_NIR_17403	chr7	34074817	34088199	-	34074817	34088783	A5SS	ENSMUST00000085585.12	known	0.00	0	35	0	35	n	0.00	0	22	0	22	n	0.00	0	47	0	47	n	0.00	0	35	0	35	n	0.02	1	40	1	40	n	0.00	0	30	0	30	n	0.02	1	57	1	57	n	0.00	0	28	0	28	n	0.03	1	30	1	30	n	0.03	2	56	2	56	y	0.02	1	41	1	41	n	0.00	0	47	0	47	n	ENSMUSG00000066568.13	Lsm14a	chr7	protein_coding	LSM14A mRNA processing body assembly factor
known_NIR_17404	chr7	34349493	34350172	-	34349556	34350172	A3SS	ENSMUST00000108069.8	known	0.00	0	14	0	14	n	0.00	0	21	0	21	n	0.03	1	30	1	30	n	0.00	0	18	0	18	n	0.19	5	21	5	21	y	0.00	0	23	0	23	n	0.06	2	29	2	29	y	0.00	0	19	0	19	n	0.00	0	12	0	12	n	0.00	0	23	0	23	n	0.00	0	16	0	16	n	0.04	1	24	1	24	n	ENSMUSG00000030499.10	Kctd15	chr7	protein_coding	potassium channel tetramerisation domain containing 15
known_NIR_17405	chr7	34352107	34354705	-	34352107	34353672	5pMXE	ENSMUST00000108069.8	known	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	22	0	22	n	0.00	0	7	0	7	n	0.00	0	22	0	22	n	0.00	0	4	0	4	n	0.23	3	10	3	10	y	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	ENSMUSG00000030499.10	Kctd15	chr7	protein_coding	potassium channel tetramerisation domain containing 15
known_NIR_17406	chr7	34671128	34720390	+	34671128	34679930	3pMXE	ENSMUST00000162509.2	known	1.00	116	0	116	0	n	1.00	90	0	90	0	n	0.99	92	1	92	1	n	1.00	130	0	130	0	n	1.00	127	0	127	0	n	1.00	78	0	78	0	n	1.00	120	0	120	0	n	1.00	75	0	75	0	n	1.00	89	0	89	0	n	0.99	152	1	152	1	n	0.98	123	2	123	2	y	0.99	112	1	112	1	n	ENSMUSG00000063931.15	Pepd	chr7	protein_coding	peptidase D
known_NIR_17407	chr7	34750357	34755070	-	34750357	34755801	A5SS	ENSMUST00000130491.3	known	0.00	0	27	0	27	n	0.00	0	34	0	34	n	0.04	4	94	4	94	y	0.02	1	62	1	62	n	0.02	2	80	2	80	y	0.00	0	58	0	58	n	0.00	0	49	0	49	n	0.06	3	50	3	50	y	0.00	0	39	0	39	n	0.00	0	52	0	52	n	0.00	0	30	0	30	n	0.05	3	57	3	57	y	ENSMUSG00000056216.10	Cebpg	chr7	protein_coding	CCAAT/enhancer binding protein (C/EBP), gamma
known_NIR_17408	chr7	34750357	34755078	-	34750357	34755801	A5SS	ENSMUST00000130491.3	known	0.04	1	27	1	27	n	0.00	0	34	0	34	n	0.02	2	94	2	94	y	0.02	1	62	1	62	n	0.02	2	80	2	80	y	0.03	2	58	2	58	y	0.00	0	49	0	49	n	0.00	0	50	0	50	n	0.00	0	39	0	39	n	0.04	2	52	2	52	y	0.03	1	30	1	30	n	0.03	2	57	2	57	y	ENSMUSG00000056216.10	Cebpg	chr7	protein_coding	CCAAT/enhancer binding protein (C/EBP), gamma
known_NIR_17409	chr7	34902094	34902354	-	34899840	34902354	A3SS	ENSMUST00000153163.2	known	0.98	61	1	61	1	n	0.97	58	2	58	2	y	0.91	29	3	29	3	y	0.89	56	7	56	7	y	0.96	47	2	47	2	y	1.00	11	0	11	0	n	0.98	57	1	57	1	n	0.96	25	1	25	1	n	0.95	40	2	40	2	y	0.97	69	2	69	2	y	0.92	55	5	55	5	y	0.97	56	2	56	2	y	ENSMUSG00000001802.17	Lrp3	chr7	protein_coding	low density lipoprotein receptor-related protein 3
known_NIR_17410	chr7	34905600	34912565	-	34905600;34910922	34910860;34912565	ES	ENSMUST00000122409.8	known	0.00	0	17.5	0	20;15	n	0.00	0	10.5	0	11;10	n	0.06	1	15.0	1	18;12	n	0.00	0	34.0	0	42;26	n	0.06	2	30.5	2	39;22	y	0.15	2	11.0	2	10;12	y	0.10	2	18.5	2	22;15	y	0.12	2	14.5	2	20;9	y	0.00	0	19.5	0	24;15	n	0.00	0	31.0	0	36;26	n	0.00	0	18.0	0	25;11	n	0.00	0	14.0	0	18;10	n	ENSMUSG00000001802.17	Lrp3	chr7	protein_coding	low density lipoprotein receptor-related protein 3
known_NIR_17411	chr7	35007756	35008726	-	35007764	35008726	A3SS	ENSMUST00000079693.12	known	0.00	0	10	0	10	n	0.25	2	6	2	6	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.25	3	9	3	9	y	0.25	2	6	2	6	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.20	1	4	1	4	n	0.42	5	7	5	7	y	0.25	2	6	2	6	n	0.18	4	18	4	18	y	ENSMUSG00000063808.15	Gpatch1	chr7	protein_coding	G patch domain containing 1
known_NIR_17412	chr7	35128723	35131943	+	35128723;35129536	35129340;35131943	ES	ENSMUST00000141704.8	known	0.77	5	1.5	5	3;0	n	0.92	12	1.0	12	2;0	n	0.94	17	1.0	17	2;0	n	0.90	13	1.5	13	2;1	n	0.85	17	3.0	17	4;2	y	1.00	11	0.0	11	0;0	n	0.82	16	3.5	16	7;0	n	0.90	9	1.0	9	2;0	n	0.84	8	1.5	8	3;0	n	0.89	17	2.0	17	4;0	n	0.78	9	2.5	9	5;0	n	0.94	15	1.0	15	2;0	n	ENSMUSG00000023072.15	Cep89	chr7	protein_coding	centrosomal protein 89
known_NIR_17413	chr7	35250967	35254579	-	35251086	35254579	A3SS	ENSMUST00000040962.6	known	0.00	0	72	0	72	n	0.00	0	78	0	78	n	0.03	6	216	6	216	y	0.00	0	96	0	96	n	0.01	1	122	1	122	n	0.05	5	97	5	97	y	0.00	0	94	0	94	n	0.00	0	84	0	84	n	0.05	4	75	4	75	y	0.00	0	131	0	131	n	0.00	0	102	0	102	n	0.02	3	155	3	155	y	ENSMUSG00000034875.6	Nudt19	chr7	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 19
known_NIR_17414	chr7	35299850	35300931	+	35299850	35300915	A3SS	ENSMUST00000040844.16	known	0.07	2	26	2	26	y	0.00	0	22	0	22	n	0.00	0	59	0	59	n	0.15	5	28	5	28	y	0.00	0	50	0	50	n	0.00	0	40	0	40	n	0.00	0	32	0	32	n	0.08	2	24	2	24	y	0.00	0	26	0	26	n	0.00	0	36	0	36	n	0.00	0	15	0	15	n	0.00	0	51	0	51	n	ENSMUSG00000034867.17	Ankrd27	chr7	protein_coding	ankyrin repeat domain 27 (VPS9 domain)
known_NIR_17415	chr7	35320087	35325072	+	35320087;35321774	35321730;35325072	ES	ENSMUST00000040844.16	known	0.19	6	26.0	6	21;31	y	0.09	3	30.0	3	30;30	y	0.12	9	66.5	9	62;71	y	0.19	6	25.0	6	20;30	y	0.11	8	64.5	8	60;69	y	0.05	2	37.0	2	30;44	y	0.25	10	29.5	10	20;39	y	0.06	2	30.5	2	28;33	y	0.18	5	23.0	5	18;28	y	0.10	4	34.5	4	33;36	y	0.10	2	18.0	2	14;22	y	0.21	8	29.5	8	27;32	y	ENSMUSG00000034867.17	Ankrd27	chr7	protein_coding	ankyrin repeat domain 27 (VPS9 domain)
known_NIR_17416	chr7	35345606	35346727	-	35345606	35346731	A5SS	ENSMUST00000118501.8	known	0.01	2	169	2	169	y	0.00	0	180	0	180	n	0.00	0	257	0	257	n	0.00	0	151	0	151	n	0.00	0	231	0	231	n	0.00	0	139	0	139	n	0.00	0	257	0	257	n	0.00	0	112	0	112	n	0.00	0	157	0	157	n	0.00	0	264	0	264	n	0.00	0	193	0	193	n	0.00	0	195	0	195	n	ENSMUSG00000030417.16	Pdcd5	chr7	protein_coding	programmed cell death 5
known_NIR_17417	chr7	35421104	35424716	-	35421104	35422132	5pMXE	ENSMUST00000127782.3	known	0.12	1	7	1	7	n	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.00	0	18	0	18	n	0.05	1	20	1	20	n	0.00	0	10	0	10	n	0.29	2	5	2	5	n	0.40	2	3	2	3	n	0.00	0	13	0	13	n	0.00	0	24	0	24	n	0.00	0	15	0	15	n	0.16	3	16	3	16	y	ENSMUSG00000043671.15	Dpy19l3	chr7	protein_coding	dpy-19-like 3 (C. elegans)
known_NIR_17418	chr7	35421104	35424716	-	35421104;35422255	35422132;35424716	ES	ENSMUST00000051377.15	known	0.14	1	6.0	1	7;5	n	0.29	1	2.5	1	3;2	n	0.00	0	5.0	0	5;5	n	0.00	0	17.0	0	18;16	n	0.06	1	14.5	1	20;9	n	0.00	0	7.5	0	10;5	n	0.27	2	5.5	2	5;6	y	0.33	2	4.0	2	3;5	y	0.00	0	13.0	0	13;13	n	0.00	0	17.0	0	24;10	n	0.00	0	12.0	0	15;9	n	0.17	3	14.5	3	16;13	y	ENSMUSG00000043671.15	Dpy19l3	chr7	protein_coding	dpy-19-like 3 (C. elegans)
known_NIR_17419	chr7	35429197	35449165	-	35429201	35449165	A3SS	ENSMUST00000051377.15	known	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.14	2	12	2	12	y	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.12	2	14	2	14	y	ENSMUSG00000043671.15	Dpy19l3	chr7	protein_coding	dpy-19-like 3 (C. elegans)
known_NIR_17420	chr7	35491187	35494721	-	35491187	35492948	A5SS	ENSMUST00000061586.11	known	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.09	2	20	2	20	y	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.08	1	11	1	11	n	0.14	1	6	1	6	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	ENSMUSG00000044452.11	Zfp507	chr7	protein_coding	zinc finger protein 507
known_NIR_17421	chr7	35491187	35500863	-	35491187	35492948	5pMXE	ENSMUST00000206615.2	known	0.00	0	3	0	3	n	0.12	1	7	1	7	n	0.09	2	20	2	20	y	0.29	2	5	2	5	n	0.08	1	11	1	11	n	0.11	1	8	1	8	n	0.00	0	8	0	8	n	0.08	1	11	1	11	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.11	1	8	1	8	n	0.10	1	9	1	9	n	ENSMUSG00000044452.11	Zfp507	chr7	protein_coding	zinc finger protein 507
known_NIR_17422	chr7	35491187	35500863	-	35491187;35495043	35492948;35500863	ES	ENSMUST00000061586.11	known	0.00	0	3.5	0	3;4	n	0.13	1	6.5	1	7;6	n	0.12	2	14.5	2	20;9	y	0.25	2	6.0	2	5;7	y	0.08	1	11.0	1	11;11	n	0.12	1	7.5	1	8;7	n	0.00	0	5.5	0	8;3	n	0.11	1	8.5	1	11;6	n	0.00	0	7.0	0	6;8	n	0.00	0	10.5	0	10;11	n	0.13	1	6.5	1	8;5	n	0.12	1	7.0	1	9;5	n	ENSMUSG00000044452.11	Zfp507	chr7	protein_coding	zinc finger protein 507
known_NIR_17423	chr7	35491187;35495043	35494721;35500863	-	35491187	35500863	cassetteExon	ENSMUST00000187282.3	known	1.00	2.0	0	0;4	0	n	0.75	3.0	1	0;6	1	n	0.73	5.5	2	2;9	2	y	0.64	3.5	2	0;7	2	n	0.85	5.5	1	0;11	1	n	0.78	3.5	1	0;7	1	n	1.00	1.5	0	0;3	0	n	0.78	3.5	1	1;6	1	n	1.00	4.5	0	1;8	0	n	1.00	5.5	0	0;11	0	n	0.71	2.5	1	0;5	1	n	0.71	2.5	1	0;5	1	n	ENSMUSG00000044452.11	Zfp507	chr7	protein_coding	zinc finger protein 507
known_NIR_17424	chr7	3620416	3620616	+	3620406	3620616	A5SS	ENSMUST00000076657.11	known	0.02	10	469	10	469	y	0.03	17	569	17	569	y	0.01	5	510	5	510	y	0.02	10	484	10	484	y	0.01	8	631	8	631	y	0.01	4	332	4	332	y	0.01	10	750	10	750	y	0.00	0	356	0	356	n	0.01	5	533	5	533	y	0.02	15	734	15	734	y	0.01	7	623	7	623	y	0.02	12	683	12	683	y	ENSMUSG00000035674.14	Ndufa3	chr7	protein_coding	NADH:ubiquinone oxidoreductase subunit A3
known_NIR_17425	chr7	3620690	3622429	+	3621139	3622429	A5SS	ENSMUST00000150497.8	known	1.00	1045	2	1045	2	y	1.00	1213	3	1213	3	y	1.00	1066	4	1066	4	y	1.00	968	2	968	2	y	1.00	1374	3	1374	3	y	1.00	742	1	742	1	n	1.00	1468	0	1468	0	n	1.00	735	1	735	1	n	1.00	1038	3	1038	3	y	1.00	1544	7	1544	7	y	1.00	1300	0	1300	0	n	1.00	1395	4	1395	4	y	ENSMUSG00000035674.14	Ndufa3	chr7	protein_coding	NADH:ubiquinone oxidoreductase subunit A3
known_NIR_17426	chr7	3622506	3622952	+	3622506	3623000	A3SS	ENSMUST00000076657.11	known	0.00	3	841	3	841	y	0.01	8	955	8	955	y	0.00	1	825	1	825	n	0.00	2	737	2	737	y	0.00	4	1010	4	1010	y	0.01	8	551	8	551	y	0.00	5	1173	5	1173	y	0.01	5	505	5	505	y	0.00	2	738	2	738	y	0.00	5	1185	5	1185	y	0.00	5	1077	5	1077	y	0.00	0	1020	0	1020	n	ENSMUSG00000035674.14	Ndufa3	chr7	protein_coding	NADH:ubiquinone oxidoreductase subunit A3
known_NIR_17427	chr7	3623473	3623746	-	3623473	3623776	A5SS	ENSMUST00000155592.8	known	0.53	16	14	16	14	y	0.53	10	9	10	9	y	0.56	19	15	19	15	y	0.73	8	3	8	3	y	0.48	13	14	13	14	y	0.29	4	10	4	10	y	0.53	21	19	21	19	y	0.53	8	7	8	7	y	0.63	12	7	12	7	y	0.59	17	12	17	12	y	0.48	14	15	14	15	y	0.37	7	12	7	12	y	ENSMUSG00000006335.17	Tfpt	chr7	protein_coding	TCF3 (E2A) fusion partner
known_NIR_17428	chr7	3624131	3631827	-	3624131	3627598	A5SS&ES	ENSMUST00000206370.2	known	0.00	0	29	0	29	n	0.00	0	25	0	25	n	0.02	1	51	1	51	n	0.04	1	24	1	24	n	0.03	1	30	1	30	n	0.00	0	16	0	16	n	0.05	2	42	2	42	y	0.00	0	28	0	28	n	0.00	0	31	0	31	n	0.00	0	32	0	32	n	0.00	0	35	0	35	n	0.00	0	34	0	34	n	ENSMUSG00000006335.17	Tfpt	chr7	protein_coding	TCF3 (E2A) fusion partner
known_NIR_17429	chr7	3624131	3631827	-	3624131;3627668	3627598;3631827	ES	ENSMUST00000155592.8	known	0.00	0	25.0	0	29;21	n	0.00	0	27.0	0	25;29	n	0.02	1	51.0	1	51;51	n	0.04	1	26.5	1	24;29	n	0.03	1	31.5	1	30;33	n	0.00	0	15.0	0	16;14	n	0.05	2	39.0	2	42;36	y	0.00	0	23.5	0	28;19	n	0.00	0	31.5	0	31;32	n	0.00	0	37.5	0	32;43	n	0.00	0	37.5	0	35;40	n	0.00	0	33.0	0	34;32	n	ENSMUSG00000006335.17	Tfpt	chr7	protein_coding	TCF3 (E2A) fusion partner
known_NIR_17430	chr7	3624131	3631827	-	3627668	3631827	3pMXE	ENSMUST00000153143.2	known	0.00	0	21	0	21	n	0.00	0	29	0	29	n	0.02	1	51	1	51	n	0.03	1	29	1	29	n	0.03	1	33	1	33	n	0.00	0	14	0	14	n	0.05	2	36	2	36	y	0.00	0	19	0	19	n	0.00	0	32	0	32	n	0.00	0	43	0	43	n	0.00	0	40	0	40	n	0.00	0	32	0	32	n	ENSMUSG00000006335.17	Tfpt	chr7	protein_coding	TCF3 (E2A) fusion partner
known_NIR_17431	chr7	3627668	3631823	-	3627668	3631827	A5SS	ENSMUST00000155592.8	known	0.00	0	21	0	21	n	0.19	7	29	7	29	y	0.06	3	51	3	51	y	0.22	8	29	8	29	y	0.08	3	33	3	33	y	0.12	2	14	2	14	y	0.12	5	36	5	36	y	0.17	4	19	4	19	y	0.06	2	32	2	32	y	0.00	0	43	0	43	n	0.02	1	40	1	40	n	0.14	5	32	5	32	y	ENSMUSG00000006335.17	Tfpt	chr7	protein_coding	TCF3 (E2A) fusion partner
known_NIR_17432	chr7	3633186	3633557	+	3633055	3633557	A5SS	ENSMUST00000179769.8	known	0.18	3	14	3	14	y	0.00	0	18	0	18	n	0.00	0	38	0	38	n	0.00	0	20	0	20	n	0.00	0	31	0	31	n	0.00	0	19	0	19	n	0.00	0	19	0	19	n	0.00	0	22	0	22	n	0.00	0	19	0	19	n	0.00	0	29	0	29	n	0.00	0	13	0	13	n	0.00	0	21	0	21	n	ENSMUSG00000008373.17	Prpf31	chr7	protein_coding	pre-mRNA processing factor 31
known_NIR_17433	chr7	3639750	3641630	+	3639750	3641648	A3SS	ENSMUST00000179769.8	known	1.00	26	0	26	0	n	0.87	26	4	26	4	y	1.00	53	0	53	0	n	1.00	33	0	33	0	n	1.00	48	0	48	0	n	1.00	28	0	28	0	n	1.00	34	0	34	0	n	1.00	25	0	25	0	n	1.00	29	0	29	0	n	1.00	38	0	38	0	n	1.00	32	0	32	0	n	0.83	25	5	25	5	y	ENSMUSG00000008373.17	Prpf31	chr7	protein_coding	pre-mRNA processing factor 31
known_NIR_17434	chr7	3648594	3653800	+	3648583	3653800	A5SS	ENSMUST00000143085.8	known	0.10	1	9	1	9	n	0.00	0	8	0	8	n	0.07	1	13	1	13	n	0.11	2	16	2	16	y	0.00	0	18	0	18	n	0.00	0	9	0	9	n	0.47	7	8	7	8	y	0.08	1	12	1	12	n	0.00	0	10	0	10	n	0.29	6	15	6	15	y	0.09	1	10	1	10	n	0.36	5	9	5	9	y	ENSMUSG00000035632.17	Cnot3	chr7	protein_coding	CCR4-NOT transcription complex, subunit 3
known_NIR_17435	chr7	3655127	3656144	+	3655127	3656199	A3SS	ENSMUST00000143085.8	known	0.00	0	27	0	27	n	0.00	0	33	0	33	n	0.00	0	50	0	50	n	0.05	2	37	2	37	y	0.00	0	47	0	47	n	0.00	0	20	0	20	n	0.00	0	46	0	46	n	0.00	0	18	0	18	n	0.00	0	27	0	27	n	0.00	0	49	0	49	n	0.00	0	32	0	32	n	0.00	0	32	0	32	n	ENSMUSG00000035632.17	Cnot3	chr7	protein_coding	CCR4-NOT transcription complex, subunit 3
known_NIR_17436	chr7	3655127	3656196	+	3655127	3656199	A3SS	ENSMUST00000143085.8	known	0.21	7	27	7	27	y	0.20	8	33	8	33	y	0.14	8	50	8	50	y	0.12	5	37	5	37	y	0.31	21	47	21	47	y	0.23	6	20	6	20	y	0.16	9	46	9	46	y	0.18	4	18	4	18	y	0.16	5	27	5	27	y	0.18	11	49	11	49	y	0.06	2	32	2	32	y	0.18	7	32	7	32	y	ENSMUSG00000035632.17	Cnot3	chr7	protein_coding	CCR4-NOT transcription complex, subunit 3
known_NIR_17437	chr7	3681848	3686808	-	3681848	3691522	A5SS	ENSMUST00000128364.8	known	1.00	56	0	56	0	n	0.98	56	1	56	1	n	1.00	71	0	71	0	n	0.98	61	1	61	1	n	0.99	75	1	75	1	n	1.00	51	0	51	0	n	1.00	91	0	91	0	n	1.00	52	0	52	0	n	1.00	51	0	51	0	n	0.98	89	2	89	2	y	0.98	56	1	56	1	n	1.00	87	0	87	0	n	ENSMUSG00000035596.15	Mboat7	chr7	protein_coding	membrane bound O-acyltransferase domain containing 7
known_NIR_17438	chr7	3689033	3691522	-	3681848	3691522	A3SS	ENSMUST00000128364.8	known	1.00	42	0	42	0	n	0.95	21	1	21	1	n	1.00	51	0	51	0	n	0.97	34	1	34	1	n	0.99	68	1	68	1	n	1.00	35	0	35	0	n	1.00	51	0	51	0	n	1.00	33	0	33	0	n	1.00	31	0	31	0	n	0.96	50	2	50	2	y	0.98	43	1	43	1	n	1.00	52	0	52	0	n	ENSMUSG00000035596.15	Mboat7	chr7	protein_coding	membrane bound O-acyltransferase domain containing 7
known_NIR_17439	chr7	3695117	3695532	-	3695117	3695740	A5SS	ENSMUST00000038608.14	known	0.00	0	38	0	38	n	0.00	0	21	0	21	n	0.02	1	44	1	44	n	0.00	0	63	0	63	n	0.00	0	31	0	31	n	0.00	0	15	0	15	n	0.06	3	44	3	44	y	0.00	0	33	0	33	n	0.00	0	22	0	22	n	0.00	0	40	0	40	n	0.00	0	20	0	20	n	0.05	2	39	2	39	y	ENSMUSG00000035596.15	Mboat7	chr7	protein_coding	membrane bound O-acyltransferase domain containing 7
known_NIR_17440	chr7	3696864	3697597	+	3696888	3697597	A5SS	ENSMUST00000108630.8	known	0.19	7	30	7	30	y	0.03	1	32	1	32	n	0.09	3	29	3	29	y	0.09	4	42	4	42	y	0.08	5	61	5	61	y	0.09	2	20	2	20	y	0.10	6	52	6	52	y	0.12	2	14	2	14	y	0.10	4	35	4	35	y	0.12	7	51	7	51	y	0.04	2	48	2	48	y	0.06	3	46	3	46	y	ENSMUSG00000035585.17	Tsen34	chr7	protein_coding	tRNA splicing endonuclease subunit 34
known_NIR_17441	chr7	3696888	3697597	+	3695989	3697597	A5SS	ENSMUST00000205734.2	known	1.00	30	0	30	0	n	0.89	32	4	32	4	y	0.83	29	6	29	6	y	0.91	42	4	42	4	y	1.00	61	0	61	0	n	0.95	20	1	20	1	n	0.96	52	2	52	2	y	0.93	14	1	14	1	n	0.90	35	4	35	4	y	0.96	51	2	51	2	y	0.96	48	2	48	2	y	0.92	46	4	46	4	y	ENSMUSG00000035585.17	Tsen34	chr7	protein_coding	tRNA splicing endonuclease subunit 34
known_NIR_17442	chr7	3697057	3697597	+	3696864	3697597	A5SS	ENSMUST00000123088.8	known	0.22	2	7	2	7	n	0.83	5	1	5	1	n	0.25	1	3	1	3	n	0.20	1	4	1	4	n	0.38	3	5	3	5	n	0.33	1	2	1	2	n	0.00	0	6	0	6	n	0.78	7	2	7	2	n	0.00	0	4	0	4	n	0.36	4	7	4	7	y	0.50	2	2	2	2	n	0.25	1	3	1	3	n	ENSMUSG00000035585.17	Tsen34	chr7	protein_coding	tRNA splicing endonuclease subunit 34
known_NIR_17443	chr7	3697057	3697597	+	3696888	3697597	A5SS	ENSMUST00000108630.8	known	0.06	2	30	2	30	y	0.14	5	32	5	32	y	0.03	1	29	1	29	n	0.02	1	42	1	42	n	0.05	3	61	3	61	y	0.05	1	20	1	20	n	0.00	0	52	0	52	n	0.33	7	14	7	14	y	0.00	0	35	0	35	n	0.07	4	51	4	51	y	0.04	2	48	2	48	y	0.02	1	46	1	46	n	ENSMUSG00000035585.17	Tsen34	chr7	protein_coding	tRNA splicing endonuclease subunit 34
known_NIR_17444	chr7	3697413	3697597	+	3696864	3697597	A5SS	ENSMUST00000123088.8	known	0.42	5	7	5	7	y	0.67	2	1	2	1	n	0.50	3	3	3	3	n	0.50	4	4	4	4	n	0.50	5	5	5	5	y	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.33	2	4	2	4	n	0.00	0	7	0	7	n	0.60	3	2	3	2	n	0.00	0	3	0	3	n	ENSMUSG00000035585.17	Tsen34	chr7	protein_coding	tRNA splicing endonuclease subunit 34
known_NIR_17445	chr7	3697413	3697597	+	3696888	3697597	A5SS	ENSMUST00000108630.8	known	0.14	5	30	5	30	y	0.06	2	32	2	32	y	0.09	3	29	3	29	y	0.09	4	42	4	42	y	0.08	5	61	5	61	y	0.00	0	20	0	20	n	0.00	0	52	0	52	n	0.00	0	14	0	14	n	0.05	2	35	2	35	y	0.00	0	51	0	51	n	0.06	3	48	3	48	y	0.00	0	46	0	46	n	ENSMUSG00000035585.17	Tsen34	chr7	protein_coding	tRNA splicing endonuclease subunit 34
known_NIR_17446	chr7	3698226	3698384	+	3698226	3698351	A3SS	ENSMUST00000108630.8	known	0.00	0	136	0	136	n	0.06	9	150	9	150	y	0.05	7	135	7	135	y	0.02	3	134	3	134	y	0.05	10	185	10	185	y	0.00	0	97	0	97	n	0.00	0	204	0	204	n	0.05	6	110	6	110	y	0.00	0	141	0	141	n	0.04	10	246	10	246	y	0.04	9	191	9	191	y	0.00	0	178	0	178	n	ENSMUSG00000035585.17	Tsen34	chr7	protein_coding	tRNA splicing endonuclease subunit 34
known_NIR_17447	chr7	3698620	3703614	+	3698620	3703527	A3SS	ENSMUST00000108630.8	known	0.00	0	123	0	123	n	0.00	0	145	0	145	n	0.00	0	136	0	136	n	0.00	0	83	0	83	n	0.00	0	130	0	130	n	0.02	1	65	1	65	n	0.01	2	182	2	182	y	0.01	1	86	1	86	n	0.00	0	115	0	115	n	0.02	3	168	3	168	y	0.01	2	132	2	132	y	0.00	0	157	0	157	n	ENSMUSG00000035585.17	Tsen34	chr7	protein_coding	tRNA splicing endonuclease subunit 34
known_NIR_17448	chr7	3698620;3698832	3698712;3703527	+	3698620	3703527	cassetteExon	ENSMUST00000108630.8	known	0.00	0.0	123	0;0	123	n	0.00	0.0	145	0;0	145	n	0.00	0.0	136	0;0	136	n	0.03	2.5	83	3;2	83	y	0.01	1.5	130	3;0	130	n	0.01	0.5	65	1;0	65	n	0.01	1.5	182	2;1	182	n	0.00	0.0	86	0;0	86	n	0.00	0.0	115	0;0	115	n	0.00	0.0	168	0;0	168	n	0.02	2.5	132	5;0	132	n	0.00	0.5	157	0;1	157	n	ENSMUSG00000035585.17	Tsen34	chr7	protein_coding	tRNA splicing endonuclease subunit 34
known_NIR_17449	chr7	3707063	3707214	+	3707063	3707326	A3SS	ENSMUST00000006496.15	known	0.00	1	687	1	687	n	0.00	0	758	0	758	n	0.00	3	1210	3	1210	y	0.00	2	769	2	769	y	0.00	3	1061	3	1061	y	0.00	0	617	0	617	n	0.00	4	1143	4	1143	y	0.00	0	603	0	603	n	0.00	0	731	0	731	n	0.00	0	1021	0	1021	n	0.00	2	866	2	866	y	0.00	0	914	0	914	n	ENSMUSG00000006333.15	Rps9	chr7	protein_coding	ribosomal protein S9
known_NIR_17450	chr7	3707767	3709650	+	3707767	3708732	A3SS&ES	ENSMUST00000108623.8	known	0.00	0	2511	0	2511	n	0.00	1	2696	1	2696	n	0.00	2	3617	2	3617	y	0.00	0	2324	0	2324	n	0.00	3	3342	3	3342	y	0.00	0	2097	0	2097	n	0.00	0	3511	0	3511	n	0.00	0	1988	0	1988	n	0.00	0	2230	0	2230	n	0.00	0	3342	0	3342	n	0.00	1	2793	1	2793	n	0.00	1	3054	1	3054	n	ENSMUSG00000006333.15	Rps9	chr7	protein_coding	ribosomal protein S9
known_NIR_17451	chr7	3707767	3709650	+	3707767;3708918	3708732;3709650	ES	ENSMUST00000006496.15	known	0.00	0	2476.5	0	2511;2442	n	0.00	1	2661.0	1	2696;2626	n	0.00	2	3515.5	2	3617;3414	y	0.00	0	2147.0	0	2324;1970	n	0.00	3	3260.0	3	3342;3178	y	0.00	0	2074.0	0	2097;2051	n	0.00	0	3389.5	0	3511;3268	n	0.00	0	1901.5	0	1988;1815	n	0.00	0	2111.0	0	2230;1992	n	0.00	0	3160.0	0	3342;2978	n	0.00	1	2748.0	1	2793;2703	n	0.00	1	2913.5	1	3054;2773	n	ENSMUSG00000006333.15	Rps9	chr7	protein_coding	ribosomal protein S9
known_NIR_17452	chr7	3707767;3709180	3708732;3709650	+	3707767	3709650	cassetteExon	ENSMUST00000108624.8	known	1.00	1266.5	0	2511;22	0	n	1.00	1359.5	1	2696;23	1	n	1.00	1824.0	2	3617;31	2	y	1.00	1172.5	0	2324;21	0	n	1.00	1683.5	3	3342;25	3	y	1.00	1056.0	0	2097;15	0	n	1.00	1768.5	0	3511;26	0	n	1.00	997.5	0	1988;7	0	n	1.00	1120.0	0	2230;10	0	n	1.00	1684.5	0	3342;27	0	n	1.00	1409.5	1	2793;26	1	n	1.00	1539.0	1	3054;24	1	n	ENSMUSG00000006333.15	Rps9	chr7	protein_coding	ribosomal protein S9
known_NIR_17453	chr7	3708918	3709650	+	3708918	3709007	A3SS	ENSMUST00000108623.8	known	0.99	2442	32	2442	32	y	0.99	2626	30	2626	30	y	0.99	3414	30	3414	30	y	0.99	1970	24	1970	24	y	0.99	3178	22	3178	22	y	1.00	2051	8	2051	8	y	0.99	3268	24	3268	24	y	1.00	1815	7	1815	7	y	0.99	1992	21	1992	21	y	0.99	2978	18	2978	18	y	0.99	2703	20	2703	20	y	0.99	2773	32	2773	32	y	ENSMUSG00000006333.15	Rps9	chr7	protein_coding	ribosomal protein S9
known_NIR_17454	chr7	3708918;3709180	3709007;3709650	+	3708918	3709650	cassetteExon	ENSMUST00000006496.15	known	0.01	27.0	2442	32;22	2442	y	0.01	26.5	2626	30;23	2626	y	0.01	30.5	3414	30;31	3414	y	0.01	22.5	1970	24;21	1970	y	0.01	23.5	3178	22;25	3178	y	0.01	11.5	2051	8;15	2051	y	0.01	25.0	3268	24;26	3268	y	0.00	7.0	1815	7;7	1815	y	0.01	15.5	1992	21;10	1992	y	0.01	22.5	2978	18;27	2978	y	0.01	23.0	2703	20;26	2703	y	0.01	28.0	2773	32;24	2773	y	ENSMUSG00000006333.15	Rps9	chr7	protein_coding	ribosomal protein S9
known_NIR_17455	chr7	3719216	3719593	-	3719335	3719593	A3SS	ENSMUST00000078451.7	known	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.14	3	19	3	19	y	0.00	0	2	0	2	n	0.00	0	17	0	17	n	0.25	3	9	3	9	y	0.00	0	26	0	26	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.18	3	14	3	14	y	0.00	0	6	0	6	n	ENSMUSG00000058818.14	Pirb	chr7	protein_coding	paired Ig-like receptor B
known_NIR_17456	chr7	37661028	37661891	-	37661122	37661891	A3SS	ENSMUST00000085513.6	known	0.02	1	44	1	44	n	0.00	0	47	0	47	n	0.03	2	70	2	70	y	0.00	0	61	0	61	n	0.01	1	74	1	74	n	0.00	0	50	0	50	n	0.03	2	65	2	65	y	0.00	0	34	0	34	n	0.00	0	64	0	64	n	0.03	2	77	2	77	y	0.00	0	72	0	72	n	0.00	0	66	0	66	n	ENSMUSG00000030421.10	Uri1	chr7	protein_coding	URI1, prefoldin-like chaperone
known_NIR_17457	chr7	37665004	37665113	-	37665004	37666746	A5SS	ENSMUST00000085513.6	known	0.02	1	56	1	56	n	0.03	1	28	1	28	n	0.00	0	94	0	94	n	0.00	0	85	0	85	n	0.00	0	92	0	92	n	0.00	0	68	0	68	n	0.00	0	74	0	74	n	0.00	0	39	0	39	n	0.00	0	68	0	68	n	0.02	2	96	2	96	y	0.05	3	53	3	53	y	0.00	0	74	0	74	n	ENSMUSG00000030421.10	Uri1	chr7	protein_coding	URI1, prefoldin-like chaperone
known_NIR_17458	chr7	37696146	37718851	-	37696146	37718535	A5SS	ENSMUST00000085513.6	known	0.00	0	25	0	25	n	0.00	0	19	0	19	n	0.00	0	48	0	48	n	0.00	0	26	0	26	n	0.00	0	35	0	35	n	0.00	0	21	0	21	n	0.00	0	33	0	33	n	0.00	0	31	0	31	n	0.00	0	18	0	18	n	0.00	0	36	0	36	n	0.10	2	19	2	19	y	0.00	0	29	0	29	n	ENSMUSG00000030421.10	Uri1	chr7	protein_coding	URI1, prefoldin-like chaperone
known_NIR_17459	chr7	37882946	37888031	+	37883324	37888031	5pMXE	ENSMUST00000178876.10	known	0.44	71	92	71	92	y	0.42	69	97	69	97	y	0.44	75	96	75	96	y	0.43	115	154	115	154	y	0.50	175	175	175	175	y	0.40	54	81	54	81	y	0.42	106	146	106	146	y	0.41	65	92	65	92	y	0.41	66	94	66	94	y	0.46	159	187	159	187	y	0.53	115	100	115	100	y	0.44	114	143	114	143	y	ENSMUSG00000054676.18	1600014C10Rik	chr7	protein_coding	RIKEN cDNA 1600014C10 gene
known_NIR_17460	chr7	37882946	37888031	+	37883450	37888031	5pMXE	ENSMUST00000179992.10	known	0.91	71	7	71	7	y	0.95	69	4	69	4	y	0.90	75	8	75	8	y	0.91	115	12	115	12	y	0.97	175	5	175	5	y	0.98	54	1	54	1	n	0.94	106	7	106	7	y	0.93	65	5	65	5	y	0.97	66	2	66	2	y	0.92	159	13	159	13	y	0.99	115	1	115	1	n	0.99	114	1	114	1	n	ENSMUSG00000054676.18	1600014C10Rik	chr7	protein_coding	RIKEN cDNA 1600014C10 gene
known_NIR_17461	chr7	37882951	37888031	+	37882946	37888031	A5SS	ENSMUST00000178207.10	known	0.21	19	71	19	71	y	0.23	21	69	21	69	y	0.05	4	75	4	75	y	0.15	21	115	21	115	y	0.10	20	175	20	175	y	0.05	3	54	3	54	y	0.15	19	106	19	106	y	0.14	11	65	11	65	y	0.07	5	66	5	66	y	0.09	15	159	15	159	y	0.07	9	115	9	115	y	0.14	18	114	18	114	y	ENSMUSG00000054676.18	1600014C10Rik	chr7	protein_coding	RIKEN cDNA 1600014C10 gene
known_NIR_17462	chr7	37883324	37888031	+	37882951	37888031	A5SS	ENSMUST00000179525.10	known	0.83	92	19	92	19	y	0.82	97	21	97	21	y	0.96	96	4	96	4	y	0.88	154	21	154	21	y	0.90	175	20	175	20	y	0.96	81	3	81	3	y	0.88	146	19	146	19	y	0.89	92	11	92	11	y	0.95	94	5	94	5	y	0.93	187	15	187	15	y	0.92	100	9	100	9	y	0.89	143	18	143	18	y	ENSMUSG00000054676.18	1600014C10Rik	chr7	protein_coding	RIKEN cDNA 1600014C10 gene
known_NIR_17463	chr7	37883450	37888031	+	37882951	37888031	A5SS	ENSMUST00000179525.10	known	0.27	7	19	7	19	y	0.16	4	21	4	21	y	0.67	8	4	8	4	y	0.36	12	21	12	21	y	0.20	5	20	5	20	y	0.25	1	3	1	3	n	0.27	7	19	7	19	y	0.31	5	11	5	11	y	0.29	2	5	2	5	n	0.46	13	15	13	15	y	0.10	1	9	1	9	n	0.05	1	18	1	18	n	ENSMUSG00000054676.18	1600014C10Rik	chr7	protein_coding	RIKEN cDNA 1600014C10 gene
known_NIR_17464	chr7	37883450	37888031	+	37883324	37888031	A5SS	ENSMUST00000178876.10	known	0.07	7	92	7	92	y	0.04	4	97	4	97	y	0.08	8	96	8	96	y	0.07	12	154	12	154	y	0.03	5	175	5	175	y	0.01	1	81	1	81	n	0.05	7	146	7	146	y	0.05	5	92	5	92	y	0.02	2	94	2	94	y	0.07	13	187	13	187	y	0.01	1	100	1	100	n	0.01	1	143	1	143	n	ENSMUSG00000054676.18	1600014C10Rik	chr7	protein_coding	RIKEN cDNA 1600014C10 gene
known_NIR_17465	chr7	37967019;37968083	37967895;37968326	-	37967019	37968326	cassetteExon	ENSMUST00000032585.8	known	0.05	2.5	43	3;2	43	y	0.03	1.0	36	0;2	36	n	0.04	2.0	44	0;4	44	n	0.02	1.0	44	0;2	44	n	0.02	1.0	55	0;2	55	n	0.06	1.5	23	0;3	23	n	0.02	1.0	50	0;2	50	n	0.06	2.5	36	0;5	36	n	0.05	1.5	31	0;3	31	n	0.02	1.5	82	3;0	82	n	0.00	0.0	44	0;0	44	n	0.01	0.5	43	0;1	43	n	ENSMUSG00000030423.8	Pop4	chr7	protein_coding	processing of precursor 4, ribonuclease P/MRP family, (S. cerevisiae)
known_NIR_17466	chr7	39202035	39202652	+	39193928	39202652	A5SS	ENSMUST00000190789.3	known	0.25	3	9	3	9	y	0.29	2	5	2	5	n	1.00	8	0	8	0	n	0.91	10	1	10	1	n	1.00	6	0	6	0	n	1.00	1	0	1	0	n	0.00	0	4	0	4	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.75	6	2	6	2	n	0.25	1	3	1	3	n	0.75	3	1	3	1	n	ENSMUSG00000108621.2	Gm33989	chr7	lncRNA	predicted gene, 33989
known_NIR_17467	chr7	4013845;4032035	4031706;4058917	-	4013845	4058917	cassetteExon	ENSMUST00000068865.13	known	1.00	3.5	0	7;0	0	n	1.00	4.0	0	2;6	0	n	0.60	1.5	1	1;2	1	n	1.00	2.5	0	3;2	0	n	0.43	3.0	4	4;2	4	y	1.00	1.0	0	2;0	0	n	0.60	1.5	1	3;0	1	n	0.75	3.0	1	4;2	1	n	1.00	3.0	0	3;3	0	n	-	-	-	-	-	-	0.50	1.0	1	2;0	1	n	0.75	3.0	1	5;1	1	n	ENSMUSG00000055541.19	Lair1	chr7	protein_coding	leukocyte-associated Ig-like receptor 1
known_NIR_17468	chr7	41026296;41037679	41037532;41042651	-	41026296	41042651	cassetteExon	ENSMUST00000071804.10	known	0.58	11.0	8	9;13	8	y	0.64	7.0	4	9;5	4	y	0.90	27.5	3	29;26	3	y	0.60	13.5	9	12;15	9	y	0.80	19.5	5	21;18	5	y	0.88	15.0	2	18;12	2	y	0.76	9.5	3	12;7	3	y	0.80	16.5	4	18;15	4	y	0.88	14.5	2	10;19	2	y	0.56	15.5	12	13;18	12	y	0.52	11.0	10	14;8	10	y	0.62	16.0	10	21;11	10	y	ENSMUSG00000056383.11	AI987944	chr7	protein_coding	expressed sequence AI987944
known_NIR_17469	chr7	41140886	41148718	-	41132383	41148718	A3SS	ENSMUST00000098509.5	known	0.00	0	14	0	14	n	0.00	0	3	0	3	n	0.20	2	8	2	8	y	0.20	1	4	1	4	n	0.25	2	6	2	6	n	0.17	1	5	1	5	n	0.12	1	7	1	7	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.14	1	6	1	6	n	ENSMUSG00000074166.8	AW146154	chr7	protein_coding	expressed sequence AW146154
known_NIR_17470	chr7	41283118	41296915	+	41283118;41284134	41284104;41296915	ES	ENSMUST00000154942.2	known	0.67	3	1.5	3	2;1	n	0.00	0	1.0	0	1;1	n	0.33	2	4.0	2	5;3	y	0.40	2	3.0	2	6;0	n	0.00	0	1.0	0	2;0	n	0.00	0	0.5	0	1;0	n	0.40	2	3.0	2	6;0	n	0.75	3	1.0	3	2;0	n	0.25	1	3.0	1	4;2	n	0.57	2	1.5	2	2;1	n	0.00	0	0.5	0	0;1	n	0.67	1	0.5	1	1;0	n	ENSMUSG00000074165.11	Zfp788	chr7	protein_coding	zinc finger protein 788
known_NIR_17471	chr7	41292856	41296915	+	41292856	41296907	A3SS	ENSMUST00000100275.10	known	0.25	1	3	1	3	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	6	6	6	6	y	1.00	1	0	1	0	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000074165.11	Zfp788	chr7	protein_coding	zinc finger protein 788
known_NIR_17472	chr7	4140150	4141695	+	4140121	4141695	A5SS	ENSMUST00000128756.8	known	0.51	28	27	28	27	y	0.68	21	10	21	10	y	0.64	52	29	52	29	y	0.55	37	30	37	30	y	0.63	62	37	62	37	y	0.60	21	14	21	14	y	0.64	57	32	57	32	y	0.67	39	19	39	19	y	0.68	61	29	61	29	y	0.64	48	27	48	27	y	0.53	26	23	26	23	y	0.67	58	28	58	28	y	ENSMUSG00000035545.14	Leng8	chr7	protein_coding	leukocyte receptor cluster (LRC) member 8
known_NIR_17473	chr7	4143042	4145031	+	4143042	4144022	3pMXE	ENSMUST00000154571.7	known	0.02	1	64	1	64	n	0.00	0	33	0	33	n	0.00	0	54	0	54	n	0.00	0	66	0	66	n	0.01	1	137	1	137	n	0.03	1	39	1	39	n	0.00	0	89	0	89	n	0.00	0	61	0	61	n	0.00	0	61	0	61	n	0.03	3	85	3	85	y	0.00	0	67	0	67	n	0.01	1	103	1	103	n	ENSMUSG00000035545.14	Leng8	chr7	protein_coding	leukocyte receptor cluster (LRC) member 8
known_NIR_17474	chr7	4143042	4145031	+	4143042;4144132	4144022;4145031	ES	ENSMUST00000128756.8	known	0.01	1	66.5	1	64;69	n	0.00	0	40.0	0	33;47	n	0.00	0	66.0	0	54;78	n	0.00	0	72.5	0	66;79	n	0.01	1	142.5	1	137;148	n	0.02	1	39.5	1	39;40	n	0.00	0	96.0	0	89;103	n	0.00	0	60.5	0	61;60	n	0.00	0	70.5	0	61;80	n	0.03	3	91.0	3	85;97	y	0.00	0	88.0	0	67;109	n	0.01	1	105.5	1	103;108	n	ENSMUSG00000035545.14	Leng8	chr7	protein_coding	leukocyte receptor cluster (LRC) member 8
known_NIR_17475	chr7	4146036	4146258	+	4146036	4146418	A3SS	ENSMUST00000037472.13	known	0.08	4	48	4	48	y	0.10	6	52	6	52	y	0.17	11	53	11	53	y	0.10	7	65	7	65	y	0.12	13	94	13	94	y	0.24	10	32	10	32	y	0.14	10	64	10	64	y	0.16	8	41	8	41	y	0.20	15	60	15	60	y	0.11	11	87	11	87	y	0.29	18	45	18	45	y	0.17	15	72	15	72	y	ENSMUSG00000035545.14	Leng8	chr7	protein_coding	leukocyte receptor cluster (LRC) member 8
known_NIR_17476	chr7	42139700	42155034	-	42139700;42150849	42150782;42155034	ES	ENSMUST00000174407.3	known	0.86	6	1.0	6	0;2	n	0.80	2	0.5	2	1;0	n	0.82	7	1.5	7	1;2	n	0.75	6	2.0	6	2;2	y	0.17	2	10.0	2	11;9	y	0.38	3	5.0	3	7;3	y	0.71	5	2.0	5	4;0	n	0.33	2	4.0	2	5;3	y	0.00	0	4.0	0	6;2	n	0.29	3	7.5	3	9;6	y	0.50	2	2.0	2	3;1	n	0.48	7	7.5	7	6;9	y	ENSMUSG00000092416.3	Zfp141	chr7	protein_coding	zinc finger protein 141
known_NIR_17477	chr7	43087107	43087463	+	43087107;43087333	43087199;43087463	ES	ENSMUST00000070518.4	known	0.33	1	2.0	1	2;2	n	0.00	0	2.5	0	0;5	n	0.00	0	3.0	0	4;2	n	0.00	0	1.5	0	0;3	n	0.00	0	2.5	0	1;4	n	0.00	0	1.5	0	2;1	n	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	0.00	0	1.5	0	3;0	n	1.00	2	0.0	2	0;0	n	0.00	0	8.0	0	12;4	n	0.33	2	4.0	2	4;4	y	ENSMUSG00000004612.10	Nkg7	chr7	protein_coding	natural killer cell group 7 sequence
known_NIR_17478	chr7	43101923	43103942	+	43101923;43102381	43102223;43103942	ES	ENSMUST00000004729.5	known	0.00	2	1382.0	2	1482;1282	y	0.00	0	1574.5	0	1729;1420	n	0.00	1	1362.0	1	1520;1204	n	0.00	0	1477.0	0	1657;1297	n	0.00	0	1916.5	0	2110;1723	n	0.00	0	933.5	0	1050;817	n	0.00	2	2172.0	2	2441;1903	y	0.00	0	989.5	0	1184;795	n	0.00	0	1327.5	0	1522;1133	n	0.00	0	2197.0	0	2498;1896	n	0.00	3	1852.5	3	2046;1659	y	0.00	0	1736.5	0	1959;1514	n	ENSMUSG00000004610.5	Etfb	chr7	protein_coding	electron transferring flavoprotein, beta polypeptide
known_NIR_17479	chr7	43101923	43103942	+	43102381	43103942	5pMXE	ENSMUST00000205363.2	known	0.00	2	1282	2	1282	y	0.00	0	1420	0	1420	n	0.00	1	1204	1	1204	n	0.00	0	1297	0	1297	n	0.00	0	1723	0	1723	n	0.00	0	817	0	817	n	0.00	2	1903	2	1903	y	0.00	0	795	0	795	n	0.00	0	1133	0	1133	n	0.00	0	1896	0	1896	n	0.00	3	1659	3	1659	y	0.00	0	1514	0	1514	n	ENSMUSG00000004610.5	Etfb	chr7	protein_coding	electron transferring flavoprotein, beta polypeptide
known_NIR_17480	chr7	43104004	43106994	+	43104004	43105903	3pMXE	ENSMUST00000206196.2	known	0.00	5	1356	5	1356	y	0.00	3	1593	3	1593	y	0.00	6	1307	6	1307	y	0.00	0	1464	0	1464	n	0.00	4	1751	4	1751	y	0.00	0	863	0	863	n	0.00	0	2113	0	2113	n	0.01	5	903	5	903	y	0.00	0	1241	0	1241	n	0.00	0	2136	0	2136	n	0.00	6	1843	6	1843	y	0.00	0	1560	0	1560	n	ENSMUSG00000004610.5	Etfb	chr7	protein_coding	electron transferring flavoprotein, beta polypeptide
known_NIR_17481	chr7	43104004	43106994	+	43104004;43106061	43105903;43106994	ES	ENSMUST00000004729.5	known	0.00	5	1544.5	5	1356;1733	y	0.00	3	1896.5	3	1593;2200	y	0.00	6	1425.0	6	1307;1543	y	0.00	0	1619.5	0	1464;1775	n	0.00	4	1955.5	4	1751;2160	y	0.00	0	973.5	0	863;1084	n	0.00	0	2414.0	0	2113;2715	n	0.00	5	1048.0	5	903;1193	y	0.00	0	1381.5	0	1241;1522	n	0.00	0	2366.0	0	2136;2596	n	0.00	6	2077.5	6	1843;2312	y	0.00	0	1804.5	0	1560;2049	n	ENSMUSG00000004610.5	Etfb	chr7	protein_coding	electron transferring flavoprotein, beta polypeptide
known_NIR_17482	chr7	43104004	43112561	+	43104004	43105903	3pMXE	ENSMUST00000206196.2	known	0.00	0	1356	0	1356	n	0.00	0	1593	0	1593	n	0.00	4	1307	4	1307	y	0.00	0	1464	0	1464	n	0.00	1	1751	1	1751	n	0.00	2	863	2	863	y	0.00	0	2113	0	2113	n	0.00	1	903	1	903	n	0.00	0	1241	0	1241	n	0.00	0	2136	0	2136	n	0.00	0	1843	0	1843	n	0.00	3	1560	3	1560	y	ENSMUSG00000004610.5	Etfb	chr7	protein_coding	electron transferring flavoprotein, beta polypeptide
known_NIR_17483	chr7	43104004	43112561	+	43104004	43106994	3pMXE	ENSMUST00000205363.2	known	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.40	4	6	4	6	y	-	-	-	-	-	-	0.20	1	4	1	4	n	1.00	2	0	2	0	n	-	-	-	-	-	-	0.17	1	5	1	5	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	1.00	3	0	3	0	n	ENSMUSG00000004610.5	Etfb	chr7	protein_coding	electron transferring flavoprotein, beta polypeptide
known_NIR_17484	chr7	43106061	43106933	+	43106061	43106994	A3SS	ENSMUST00000004729.5	known	0.01	23	1733	23	1733	y	0.01	18	2200	18	2200	y	0.02	24	1543	24	1543	y	0.01	16	1775	16	1775	y	0.01	21	2160	21	2160	y	0.01	11	1084	11	1084	y	0.00	8	2715	8	2715	y	0.01	13	1193	13	1193	y	0.01	14	1522	14	1522	y	0.01	18	2596	18	2596	y	0.01	22	2312	22	2312	y	0.01	27	2049	27	2049	y	ENSMUSG00000004610.5	Etfb	chr7	protein_coding	electron transferring flavoprotein, beta polypeptide
known_NIR_17485	chr7	43106061	43106933	+	43106061	43107100	A3SS	ENSMUST00000206411.2	known	1.00	23	0	23	0	n	1.00	18	0	18	0	n	1.00	24	0	24	0	n	1.00	16	0	16	0	n	1.00	21	0	21	0	n	1.00	11	0	11	0	n	1.00	8	0	8	0	n	0.81	13	3	13	3	y	0.78	14	4	14	4	y	1.00	18	0	18	0	n	1.00	22	0	22	0	n	1.00	27	0	27	0	n	ENSMUSG00000004610.5	Etfb	chr7	protein_coding	electron transferring flavoprotein, beta polypeptide
known_NIR_17486	chr7	43106061	43107100	+	43106061	43106994	A3SS	ENSMUST00000004729.5	known	0.00	0	1733	0	1733	n	0.00	0	2200	0	2200	n	0.00	0	1543	0	1543	n	0.00	0	1775	0	1775	n	0.00	0	2160	0	2160	n	0.00	0	1084	0	1084	n	0.00	0	2715	0	2715	n	0.00	3	1193	3	1193	y	0.00	4	1522	4	1522	y	0.00	0	2596	0	2596	n	0.00	0	2312	0	2312	n	0.00	0	2049	0	2049	n	ENSMUSG00000004610.5	Etfb	chr7	protein_coding	electron transferring flavoprotein, beta polypeptide
known_NIR_17487	chr7	43106061	43112561	+	43106061	43106933	3pMXE	ENSMUST00000143096.2	known	0.00	0	23	0	23	n	0.00	0	18	0	18	n	0.00	0	24	0	24	n	0.00	0	16	0	16	n	0.05	1	21	1	21	n	0.08	1	11	1	11	n	0.20	2	8	2	8	y	0.07	1	13	1	13	n	0.00	0	14	0	14	n	0.00	0	18	0	18	n	0.00	0	22	0	22	n	0.00	0	27	0	27	n	ENSMUSG00000004610.5	Etfb	chr7	protein_coding	electron transferring flavoprotein, beta polypeptide
known_NIR_17488	chr7	43106061	43112561	+	43106061	43106994	3pMXE	ENSMUST00000004729.5	known	0.00	0	1733	0	1733	n	0.00	0	2200	0	2200	n	0.00	0	1543	0	1543	n	0.00	0	1775	0	1775	n	0.00	1	2160	1	2160	n	0.00	1	1084	1	1084	n	0.00	2	2715	2	2715	y	0.00	1	1193	1	1193	n	0.00	0	1522	0	1522	n	0.00	0	2596	0	2596	n	0.00	0	2312	0	2312	n	0.00	0	2049	0	2049	n	ENSMUSG00000004610.5	Etfb	chr7	protein_coding	electron transferring flavoprotein, beta polypeptide
known_NIR_17489	chr7	43301113	43305950	-	43301113;43305597	43305516;43305950	ES	ENSMUST00000032667.10	known	0.00	0	7.5	0	4;11	n	0.00	0	15.0	0	17;13	n	0.05	1	17.5	1	13;22	n	0.35	3	5.5	3	6;5	y	0.00	0	24.0	0	26;22	n	0.11	1	8.5	1	10;7	n	0.00	0	7.0	0	8;6	n	0.00	0	10.5	0	6;15	n	0.00	0	1.0	0	2;0	n	0.00	0	3.0	0	3;3	n	0.00	0	5.5	0	8;3	n	0.00	0	7.5	0	4;11	n	ENSMUSG00000030474.10	Siglece	chr7	protein_coding	sialic acid binding Ig-like lectin E
known_NIR_17490	chr7	43896840;43897483	43897334;43897676	+	43896840	43897676	cassetteExon	ENSMUST00000188111.7	known	1.00	1.0	0	0;2	0	n	0.56	2.5	2	2;3	2	n	0.73	8.0	3	8;8	3	y	0.75	3.0	1	1;5	1	n	0.88	7.5	1	10;5	1	n	0.50	2.0	2	2;2	2	n	1.00	3.0	0	1;5	0	n	1.00	1.0	0	1;1	0	n	0.78	3.5	1	0;7	1	n	0.83	5.0	1	7;3	1	n	0.82	4.5	1	4;5	1	n	0.60	4.5	3	4;5	3	y	ENSMUSG00000045411.17	2410002F23Rik	chr7	protein_coding	RIKEN cDNA 2410002F23 gene
known_NIR_17491	chr7	43897483	43897676	+	43896247	43897676	A5SS	ENSMUST00000055858.14	known	0.67	2	1	2	1	n	0.75	3	1	3	1	n	0.73	8	3	8	3	y	0.83	5	1	5	1	n	1.00	5	0	5	0	n	0.50	2	2	2	2	n	0.62	5	3	5	3	n	0.33	1	2	1	2	n	0.70	7	3	7	3	y	0.60	3	2	3	2	n	0.62	5	3	5	3	n	0.83	5	1	5	1	n	ENSMUSG00000045411.17	2410002F23Rik	chr7	protein_coding	RIKEN cDNA 2410002F23 gene
known_NIR_17492	chr7	43899764	43900435	+	43899764	43900037	A3SS	ENSMUST00000055858.14	known	0.11	2	17	2	17	y	0.00	0	11	0	11	n	0.00	0	33	0	33	n	0.00	0	19	0	19	n	0.00	0	25	0	25	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.10	1	9	1	9	n	0.00	0	12	0	12	n	0.00	0	22	0	22	n	0.00	0	14	0	14	n	0.00	0	25	0	25	n	ENSMUSG00000045411.17	2410002F23Rik	chr7	protein_coding	RIKEN cDNA 2410002F23 gene
known_NIR_17493	chr7	44114905	44115514	+	44114959	44115514	A5SS	ENSMUST00000035929.11	known	0.12	32	231	32	231	y	0.15	46	269	46	269	y	0.17	24	121	24	121	y	0.13	45	305	45	305	y	0.14	50	309	50	309	y	0.25	36	108	36	108	y	0.18	69	314	69	314	y	0.12	21	158	21	158	y	0.15	40	229	40	229	y	0.14	59	356	59	356	y	0.11	33	276	33	276	y	0.15	56	330	56	330	y	ENSMUSG00000038704.13	Aspdh	chr7	protein_coding	aspartate dehydrogenase domain containing
known_NIR_17494	chr7	44114931	44115514	+	44114905	44115514	A5SS	ENSMUST00000146128.8	known	0.71	80	32	80	32	y	0.54	54	46	54	46	y	0.60	36	24	36	24	y	0.59	66	45	66	45	y	0.63	84	50	84	50	y	0.41	25	36	25	36	y	0.59	100	69	100	69	y	0.68	44	21	44	21	y	0.55	49	40	49	40	y	0.56	76	59	76	59	y	0.70	77	33	77	33	y	0.63	97	56	97	56	y	ENSMUSG00000038704.13	Aspdh	chr7	protein_coding	aspartate dehydrogenase domain containing
known_NIR_17495	chr7	44114931	44115514	+	44114959	44115514	A5SS	ENSMUST00000035929.11	known	0.26	80	231	80	231	y	0.17	54	269	54	269	y	0.23	36	121	36	121	y	0.18	66	305	66	305	y	0.21	84	309	84	309	y	0.19	25	108	25	108	y	0.24	100	314	100	314	y	0.22	44	158	44	158	y	0.18	49	229	49	229	y	0.18	76	356	76	356	y	0.22	77	276	77	276	y	0.23	97	330	97	330	y	ENSMUSG00000038704.13	Aspdh	chr7	protein_coding	aspartate dehydrogenase domain containing
known_NIR_17496	chr7	44114959	44115519	+	44114959	44115514	A3SS	ENSMUST00000035929.11	known	0.05	12	231	12	231	y	0.06	16	269	16	269	y	0.05	7	121	7	121	y	0.03	11	305	11	305	y	0.05	17	309	17	309	y	0.04	5	108	5	108	y	0.05	15	314	15	314	y	0.03	5	158	5	158	y	0.06	14	229	14	229	y	0.08	33	356	33	356	y	0.04	13	276	13	276	y	0.03	9	330	9	330	y	ENSMUSG00000038704.13	Aspdh	chr7	protein_coding	aspartate dehydrogenase domain containing
known_NIR_17497	chr7	44116237	44116603	+	44116237;44116529	44116309;44116603	ES	ENSMUST00000035929.11	known	0.05	19	353.5	19	312;395	y	0.08	30	341.5	30	245;438	y	0.04	7	154.5	7	115;194	y	0.04	13	353.0	13	287;419	y	0.04	20	459.5	20	421;498	y	0.05	7	131.5	7	116;147	y	0.03	16	480.5	16	414;547	y	0.04	8	200.5	8	190;211	y	0.03	8	302.5	8	259;346	y	0.04	18	492.0	18	411;573	y	0.04	18	459.0	18	385;533	y	0.03	12	389.0	12	320;458	y	ENSMUSG00000038704.13	Aspdh	chr7	protein_coding	aspartate dehydrogenase domain containing
known_NIR_17498	chr7	44117583	44117730	+	44117614	44117730	A5SS	ENSMUST00000118493.8	known	0.12	2	14	2	14	y	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.20	4	16	4	16	y	0.33	2	4	2	4	n	0.38	8	13	8	13	y	0.25	2	6	2	6	n	0.12	3	22	3	22	y	0.09	1	10	1	10	n	0.12	3	22	3	22	y	0.25	6	18	6	18	y	ENSMUSG00000038695.14	Josd2	chr7	protein_coding	Josephin domain containing 2
known_NIR_17499	chr7	44117583	44118231	+	44117614	44118231	A5SS	ENSMUST00000206210.2	known	0.25	21	63	21	63	y	0.27	20	55	20	55	y	0.32	24	52	24	52	y	0.23	15	51	15	51	y	0.29	30	75	30	75	y	0.22	10	35	10	35	y	0.18	17	80	17	80	y	0.30	9	21	9	21	y	0.21	12	44	12	44	y	0.21	17	64	17	64	y	0.35	33	60	33	60	y	0.28	22	58	22	58	y	ENSMUSG00000038695.14	Josd2	chr7	protein_coding	Josephin domain containing 2
known_NIR_17500	chr7	44117583	44118231	+	44117841	44118231	A5SS&ES	ENSMUST00000131817.2	known	0.32	21	44	21	44	y	0.38	20	33	20	33	y	0.56	24	19	24	19	y	0.27	15	41	15	41	y	0.42	30	41	30	41	y	0.53	10	9	10	9	y	0.32	17	36	17	36	y	0.24	9	29	9	29	y	0.24	12	39	12	39	y	0.25	17	50	17	50	y	0.49	33	34	33	34	y	0.35	22	41	22	41	y	ENSMUSG00000038695.14	Josd2	chr7	protein_coding	Josephin domain containing 2
known_NIR_17501	chr7	44117583	44118234	+	44117583	44118231	A3SS	ENSMUST00000117324.8	known	0.12	3	21	3	21	y	0.09	2	20	2	20	y	0.04	1	24	1	24	n	0.21	4	15	4	15	y	0.06	2	30	2	30	y	0.09	1	10	1	10	n	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.08	1	12	1	12	n	0.11	2	17	2	17	y	0.06	2	33	2	33	y	0.04	1	22	1	22	n	ENSMUSG00000038695.14	Josd2	chr7	protein_coding	Josephin domain containing 2
known_NIR_17502	chr7	44117583	44118234	+	44117841	44118234	5pMXE	ENSMUST00000155659.2	known	0.43	3	4	3	4	n	0.50	2	2	2	2	n	0.33	1	2	1	2	n	0.50	4	4	4	4	n	0.25	2	6	2	6	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.50	1	1	1	1	n	0.20	2	8	2	8	y	0.40	2	3	2	3	n	0.33	1	2	1	2	n	ENSMUSG00000038695.14	Josd2	chr7	protein_coding	Josephin domain containing 2
known_NIR_17503	chr7	44117583;44117841	44117730;44118231	+	44117583	44118231	cassetteExon	ENSMUST00000117324.8	known	0.52	23.0	21	2;44	21	y	0.45	16.5	20	0;33	20	n	0.28	9.5	24	0;19	24	n	0.58	20.5	15	0;41	15	n	0.43	22.5	30	4;41	30	y	0.35	5.5	10	2;9	10	y	0.56	22.0	17	8;36	17	y	0.63	15.5	9	2;29	9	y	0.64	21.0	12	3;39	12	y	0.60	25.5	17	1;50	17	n	0.36	18.5	33	3;34	33	y	0.52	23.5	22	6;41	22	y	ENSMUSG00000038695.14	Josd2	chr7	protein_coding	Josephin domain containing 2
known_NIR_17504	chr7	44117583;44117841	44117730;44118234	+	44117583	44118234	cassetteExon	ENSMUST00000120852.8	known	0.50	3.0	3	2;4	3	n	0.33	1.0	2	0;2	2	n	0.50	1.0	1	0;2	1	n	0.33	2.0	4	0;4	4	n	0.71	5.0	2	4;6	2	y	0.50	1.0	1	2;0	1	n	1.00	5.0	0	8;2	0	n	1.00	3.0	0	2;4	0	n	0.67	2.0	1	3;1	1	n	0.69	4.5	2	1;8	2	n	0.60	3.0	2	3;3	2	n	0.80	4.0	1	6;2	1	n	ENSMUSG00000038695.14	Josd2	chr7	protein_coding	Josephin domain containing 2
known_NIR_17505	chr7	44117583;44117841	44117784;44118231	+	44117583	44118231	cassetteExon	ENSMUST00000117324.8	known	0.52	23.0	21	2;44	21	y	0.45	16.5	20	0;33	20	n	0.28	9.5	24	0;19	24	n	0.58	20.5	15	0;41	15	n	0.41	20.5	30	0;41	30	n	0.31	4.5	10	0;9	10	n	0.51	18.0	17	0;36	17	n	0.62	15.0	9	1;29	9	n	0.62	19.5	12	0;39	12	n	0.60	25.0	17	0;50	17	n	0.34	17.0	33	0;34	33	n	0.49	21.5	22	2;41	22	y	ENSMUSG00000038695.14	Josd2	chr7	protein_coding	Josephin domain containing 2
known_NIR_17506	chr7	44117614	44117730	+	44117614	44117784	A3SS	ENSMUST00000131817.2	known	1.00	14	0	14	0	n	0.94	15	1	15	1	n	0.88	7	1	7	1	n	1.00	14	0	14	0	n	1.00	16	0	16	0	n	0.67	4	2	4	2	n	0.93	13	1	13	1	n	1.00	6	0	6	0	n	0.96	22	1	22	1	n	0.71	10	4	10	4	y	0.76	22	7	22	7	y	0.86	18	3	18	3	y	ENSMUSG00000038695.14	Josd2	chr7	protein_coding	Josephin domain containing 2
known_NIR_17507	chr7	44117614	44118231	+	44117614	44118234	A3SS	ENSMUST00000035844.11	known	0.95	63	3	63	3	y	0.93	55	4	55	4	y	0.93	52	4	52	4	y	0.96	51	2	51	2	y	1.00	75	0	75	0	n	1.00	35	0	35	0	n	0.95	80	4	80	4	y	0.88	21	3	21	3	y	0.90	44	5	44	5	y	0.91	64	6	64	6	y	0.92	60	5	60	5	y	0.89	58	7	58	7	y	ENSMUSG00000038695.14	Josd2	chr7	protein_coding	Josephin domain containing 2
known_NIR_17508	chr7	44117614	44118231	+	44117841	44118231	A5SS&ES	ENSMUST00000130220.8	known	0.59	63	44	63	44	y	0.62	55	33	55	33	y	0.73	52	19	52	19	y	0.55	51	41	51	41	y	0.65	75	41	75	41	y	0.80	35	9	35	9	y	0.69	80	36	80	36	y	0.42	21	29	21	29	y	0.53	44	39	44	39	y	0.56	64	50	64	50	y	0.64	60	34	60	34	y	0.59	58	41	58	41	y	ENSMUSG00000038695.14	Josd2	chr7	protein_coding	Josephin domain containing 2
known_NIR_17509	chr7	44117614	44118234	+	44117614	44117730	A3SS&ES	ENSMUST00000118493.8	known	0.18	3	14	3	14	y	0.21	4	15	4	15	y	0.36	4	7	4	7	y	0.12	2	14	2	14	y	0.00	0	16	0	16	n	0.00	0	4	0	4	n	0.24	4	13	4	13	y	0.33	3	6	3	6	n	0.19	5	22	5	22	y	0.38	6	10	6	10	y	0.19	5	22	5	22	y	0.28	7	18	7	18	y	ENSMUSG00000038695.14	Josd2	chr7	protein_coding	Josephin domain containing 2
known_NIR_17510	chr7	44117614	44118234	+	44117614	44117784	A3SS&ES	ENSMUST00000131817.2	known	1.00	3	0	3	0	n	0.80	4	1	4	1	n	0.80	4	1	4	1	n	1.00	2	0	2	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.80	4	1	4	1	n	1.00	3	0	3	0	n	0.83	5	1	5	1	n	0.60	6	4	6	4	y	0.42	5	7	5	7	y	0.70	7	3	7	3	y	ENSMUSG00000038695.14	Josd2	chr7	protein_coding	Josephin domain containing 2
known_NIR_17511	chr7	44117614	44118234	+	44117841	44118234	A5SS	ENSMUST00000155659.2	known	0.43	3	4	3	4	n	0.67	4	2	4	2	n	0.67	4	2	4	2	n	0.33	2	4	2	4	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.67	4	2	4	2	n	0.43	3	4	3	4	n	0.83	5	1	5	1	n	0.43	6	8	6	8	y	0.62	5	3	5	3	n	0.78	7	2	7	2	n	ENSMUSG00000038695.14	Josd2	chr7	protein_coding	Josephin domain containing 2
known_NIR_17512	chr7	44117614;44117841	44117730;44118231	+	44117614	44118231	cassetteExon	ENSMUST00000206210.2	known	0.32	29.0	63	14;44	63	y	0.30	24.0	55	15;33	55	y	0.20	13.0	52	7;19	52	y	0.35	27.5	51	14;41	51	y	0.28	28.5	75	16;41	75	y	0.16	6.5	35	4;9	35	y	0.23	24.5	80	13;36	80	y	0.45	17.5	21	6;29	21	y	0.41	30.5	44	22;39	44	y	0.32	30.0	64	10;50	64	y	0.32	28.0	60	22;34	60	y	0.34	29.5	58	18;41	58	y	ENSMUSG00000038695.14	Josd2	chr7	protein_coding	Josephin domain containing 2
known_NIR_17513	chr7	44117614;44117841	44117730;44118234	+	44117614	44118234	cassetteExon	ENSMUST00000035844.11	known	0.75	9.0	3	14;4	3	y	0.68	8.5	4	15;2	4	y	0.53	4.5	4	7;2	4	y	0.82	9.0	2	14;4	2	y	1.00	11.0	0	16;6	0	n	1.00	2.0	0	4;0	0	n	0.65	7.5	4	13;2	4	y	0.62	5.0	3	6;4	3	y	0.70	11.5	5	22;1	5	n	0.60	9.0	6	10;8	6	y	0.71	12.5	5	22;3	5	y	0.59	10.0	7	18;2	7	y	ENSMUSG00000038695.14	Josd2	chr7	protein_coding	Josephin domain containing 2
known_NIR_17514	chr7	44117614;44117841	44117784;44118231	+	44117614	44118231	cassetteExon	ENSMUST00000206210.2	known	0.26	22.0	63	0;44	63	n	0.24	17.0	55	1;33	55	n	0.16	10.0	52	1;19	52	n	0.29	20.5	51	0;41	51	n	0.21	20.5	75	0;41	75	n	0.14	5.5	35	2;9	35	y	0.19	18.5	80	1;36	80	n	0.41	14.5	21	0;29	21	n	0.31	20.0	44	1;39	44	n	0.30	27.0	64	4;50	64	y	0.25	20.5	60	7;34	60	y	0.28	22.0	58	3;41	58	y	ENSMUSG00000038695.14	Josd2	chr7	protein_coding	Josephin domain containing 2
known_NIR_17515	chr7	44117614;44117841	44117784;44118234	+	44117614	44118234	cassetteExon	ENSMUST00000035844.11	known	0.40	2.0	3	0;4	3	n	0.27	1.5	4	1;2	4	n	0.27	1.5	4	1;2	4	n	0.50	2.0	2	0;4	2	n	1.00	3.0	0	0;6	0	n	1.00	1.0	0	2;0	0	n	0.27	1.5	4	1;2	4	n	0.40	2.0	3	0;4	3	n	0.17	1.0	5	1;1	5	n	0.50	6.0	6	4;8	6	y	0.50	5.0	5	7;3	5	y	0.26	2.5	7	3;2	7	y	ENSMUSG00000038695.14	Josd2	chr7	protein_coding	Josephin domain containing 2
known_NIR_17516	chr7	44117841	44118234	+	44117841	44118231	A3SS	ENSMUST00000131817.2	known	0.08	4	44	4	44	y	0.06	2	33	2	33	y	0.10	2	19	2	19	y	0.09	4	41	4	41	y	0.13	6	41	6	41	y	0.00	0	9	0	9	n	0.05	2	36	2	36	y	0.12	4	29	4	29	y	0.03	1	39	1	39	n	0.14	8	50	8	50	y	0.08	3	34	3	34	y	0.05	2	41	2	41	y	ENSMUSG00000038695.14	Josd2	chr7	protein_coding	Josephin domain containing 2
known_NIR_17517	chr7	44118393	44119033	+	44118393	44119836	A3SS	ENSMUST00000035844.11	known	0.35	33	60	33	60	y	0.16	16	84	16	84	y	0.13	10	69	10	69	y	0.19	16	68	16	68	y	0.18	23	102	23	102	y	0.20	11	45	11	45	y	0.16	21	110	21	110	y	0.18	9	42	9	42	y	0.23	12	41	12	41	y	0.17	14	68	14	68	y	0.15	14	77	14	77	y	0.27	29	77	29	77	y	ENSMUSG00000038695.14	Josd2	chr7	protein_coding	Josephin domain containing 2
known_NIR_17518	chr7	44118393	44119407	+	44118393	44119033	3pMXE	ENSMUST00000149341.8	known	0.11	4	33	4	33	y	0.00	0	16	0	16	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.00	0	23	0	23	n	0.00	0	11	0	11	n	0.00	0	21	0	21	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.26	5	14	5	14	y	0.12	2	14	2	14	y	0.00	0	29	0	29	n	ENSMUSG00000038695.14	Josd2	chr7	protein_coding	Josephin domain containing 2
known_NIR_17519	chr7	44118393;44119596	44119407;44119836	+	44118393	44119836	cassetteExon	ENSMUST00000035844.11	known	0.29	24.0	60	4;44	60	y	0.16	16.0	84	0;32	84	n	0.10	7.5	69	0;15	69	n	0.19	15.5	68	0;31	68	n	0.21	27.0	102	0;54	102	n	0.09	4.5	45	0;9	45	n	0.17	22.0	110	0;44	110	n	0.12	6.0	42	0;12	42	n	0.25	14.0	41	0;28	41	n	0.30	28.5	68	5;52	68	y	0.28	30.0	77	2;58	77	y	0.21	21.0	77	0;42	77	n	ENSMUSG00000038695.14	Josd2	chr7	protein_coding	Josephin domain containing 2
known_NIR_17520	chr7	44119961	44120537	+	44119961	44120283	A3SS	ENSMUST00000136679.8	known	0.69	79	35	79	35	y	0.80	101	25	101	25	y	0.81	83	19	83	19	y	0.75	66	22	66	22	y	0.74	86	31	86	31	y	0.77	40	12	40	12	y	0.76	102	32	102	32	y	0.88	46	6	46	6	y	0.73	66	25	66	25	y	0.70	78	33	78	33	y	0.82	89	19	89	19	y	0.71	71	29	71	29	y	ENSMUSG00000038695.14	Josd2	chr7	protein_coding	Josephin domain containing 2
known_NIR_17521	chr7	44119961	44120839	+	44119961;44120731	44120537;44120839	ES	ENSMUST00000035844.11	known	0.01	1	102.5	1	79;126	n	0.00	0	104.5	0	101;108	n	0.00	0	89.5	0	83;96	n	0.00	0	83.0	0	66;100	n	0.01	1	123.5	1	86;161	n	0.02	1	46.0	1	40;52	n	0.00	0	119.0	0	102;136	n	0.00	0	53.0	0	46;60	n	0.00	0	81.5	0	66;97	n	0.00	0	102.5	0	78;127	n	0.01	1	98.0	1	89;107	n	0.04	3	81.5	3	71;92	y	ENSMUSG00000038695.14	Josd2	chr7	protein_coding	Josephin domain containing 2
known_NIR_17522	chr7	44119961;44120411	44120283;44120537	+	44119961	44120537	cassetteExon	ENSMUST00000035844.11	known	0.22	22.0	79	35;9	79	y	0.11	13.0	101	25;1	101	n	0.10	9.5	83	19;0	83	n	0.18	14.5	66	22;7	66	y	0.18	18.5	86	31;6	86	y	0.15	7.0	40	12;2	40	y	0.15	18.0	102	32;4	102	y	0.07	3.5	46	6;1	46	n	0.17	14.0	66	25;3	66	y	0.19	18.5	78	33;4	78	y	0.11	10.5	89	19;2	89	y	0.19	16.5	71	29;4	71	y	ENSMUSG00000038695.14	Josd2	chr7	protein_coding	Josephin domain containing 2
known_NIR_17523	chr7	44119961;44120731	44120283;44120839	+	44119961	44120839	cassetteExon	ENSMUST00000206887.2	known	0.99	80.5	1	35;126	1	n	1.00	66.5	0	25;108	0	n	1.00	57.5	0	19;96	0	n	1.00	61.0	0	22;100	0	n	0.99	96.0	1	31;161	1	n	0.97	32.0	1	12;52	1	n	1.00	84.0	0	32;136	0	n	1.00	33.0	0	6;60	0	n	1.00	61.0	0	25;97	0	n	1.00	80.0	0	33;127	0	n	0.98	63.0	1	19;107	1	n	0.95	60.5	3	29;92	3	y	ENSMUSG00000038695.14	Josd2	chr7	protein_coding	Josephin domain containing 2
known_NIR_17524	chr7	44120411	44120658	+	44120411	44120537	3pMXE	ENSMUST00000136609.8	known	0.25	3	9	3	9	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.30	3	7	3	7	y	0.40	4	6	4	6	y	0.00	0	2	0	2	n	0.33	2	4	2	4	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.56	5	4	5	4	n	ENSMUSG00000038695.14	Josd2	chr7	protein_coding	Josephin domain containing 2
known_NIR_17525	chr7	44140394	44141379	-	44140673	44141379	A3SS	ENSMUST00000147102.2	known	0.77	163	48	163	48	y	0.76	131	41	131	41	y	0.71	160	66	160	66	y	0.77	166	50	166	50	y	0.69	218	99	218	99	y	0.79	92	25	92	25	y	0.69	220	100	220	100	y	0.72	92	35	92	35	y	0.67	87	43	87	43	y	0.74	194	67	194	67	y	0.71	165	68	165	68	y	0.75	189	62	189	62	y	ENSMUSG00000008140.19	Emc10	chr7	protein_coding	ER membrane protein complex subunit 10
known_NIR_17526	chr7	44140394;44140673	44140587;44141379	-	44140394	44141379	cassetteExon	ENSMUST00000118808.9	known	0.20	41.5	163	35;48	163	y	0.20	33.5	131	26;41	131	y	0.25	54.0	160	42;66	160	y	0.20	42.0	166	34;50	166	y	0.25	73.0	218	47;99	218	y	0.17	19.5	92	14;25	92	y	0.26	75.5	220	51;100	220	y	0.22	26.0	92	17;35	92	y	0.31	38.5	87	34;43	87	y	0.22	54.0	194	41;67	194	y	0.26	57.5	165	47;68	165	y	0.19	45.0	189	28;62	189	y	ENSMUSG00000008140.19	Emc10	chr7	protein_coding	ER membrane protein complex subunit 10
known_NIR_17527	chr7	44142082	44142602	-	44142082	44142614	A5SS	ENSMUST00000118808.9	known	0.00	1	202	1	202	n	0.00	0	187	0	187	n	0.00	1	207	1	207	n	0.00	0	220	0	220	n	0.00	1	345	1	345	n	0.00	0	162	0	162	n	0.00	0	313	0	313	n	0.00	0	132	0	132	n	0.00	0	156	0	156	n	0.01	2	292	2	292	y	0.00	0	210	0	210	n	0.00	0	252	0	252	n	ENSMUSG00000008140.19	Emc10	chr7	protein_coding	ER membrane protein complex subunit 10
known_NIR_17528	chr7	44146457	44149574	+	44146457;44147057	44146927;44149574	ES	ENSMUST00000107927.5	known	0.00	0	1.0	0	1;1	n	0.00	0	3.0	0	3;3	n	0.00	0	3.5	0	2;5	n	-	-	-	-	-	-	0.27	2	5.5	2	4;7	y	0.00	0	4.5	0	4;5	n	0.00	0	2.5	0	1;4	n	0.00	0	4.0	0	2;6	n	0.50	1	1.0	1	1;1	n	0.29	1	2.5	1	1;4	n	-	-	-	-	-	-	0.00	0	3.5	0	3;4	n	ENSMUSG00000051113.10	Fam71e1	chr7	protein_coding	family with sequence similarity 71, member E1
known_NIR_17529	chr7	44200831	44201024	-	44200921	44201024	A3SS	ENSMUST00000107912.8	known	0.00	0	131	0	131	n	0.00	0	112	0	112	n	0.00	0	151	0	151	n	0.00	0	129	0	129	n	0.00	0	185	0	185	n	0.00	0	71	0	71	n	0.00	0	144	0	144	n	0.00	0	68	0	68	n	0.00	0	102	0	102	n	0.00	0	167	0	167	n	0.01	2	154	2	154	y	0.00	0	166	0	166	n	ENSMUSG00000060601.14	Nr1h2	chr7	protein_coding	nuclear receptor subfamily 1, group H, member 2
known_NIR_17530	chr7	44201660	44201931	-	44201669	44201931	A3SS	ENSMUST00000107912.8	known	0.27	17	47	17	47	y	0.33	19	38	19	38	y	0.38	30	50	30	50	y	0.45	31	38	31	38	y	0.44	39	50	39	50	y	0.31	14	31	14	31	y	0.35	36	66	36	66	y	0.52	24	22	24	22	y	0.50	25	25	25	25	y	0.43	36	47	36	47	y	0.44	24	31	24	31	y	0.27	26	69	26	69	y	ENSMUSG00000060601.14	Nr1h2	chr7	protein_coding	nuclear receptor subfamily 1, group H, member 2
known_NIR_17531	chr7	44201767	44201931	-	44201660	44201931	A3SS	ENSMUST00000107911.8	known	0.06	1	17	1	17	n	0.00	0	19	0	19	n	0.00	0	30	0	30	n	0.00	0	31	0	31	n	0.03	1	39	1	39	n	0.00	0	14	0	14	n	0.03	1	36	1	36	n	0.08	2	24	2	24	y	0.04	1	25	1	25	n	0.00	0	36	0	36	n	0.08	2	24	2	24	y	0.04	1	26	1	26	n	ENSMUSG00000060601.14	Nr1h2	chr7	protein_coding	nuclear receptor subfamily 1, group H, member 2
known_NIR_17532	chr7	44201767	44201931	-	44201669	44201931	A3SS	ENSMUST00000107912.8	known	0.02	1	47	1	47	n	0.00	0	38	0	38	n	0.00	0	50	0	50	n	0.00	0	38	0	38	n	0.02	1	50	1	50	n	0.00	0	31	0	31	n	0.01	1	66	1	66	n	0.08	2	22	2	22	y	0.04	1	25	1	25	n	0.00	0	47	0	47	n	0.06	2	31	2	31	y	0.01	1	69	1	69	n	ENSMUSG00000060601.14	Nr1h2	chr7	protein_coding	nuclear receptor subfamily 1, group H, member 2
known_NIR_17533	chr7	44201788	44201931	-	44201660	44201931	A3SS	ENSMUST00000107911.8	known	0.00	0	17	0	17	n	0.00	0	19	0	19	n	0.00	0	30	0	30	n	0.00	0	31	0	31	n	0.05	2	39	2	39	y	0.00	0	14	0	14	n	0.05	2	36	2	36	y	0.00	0	24	0	24	n	0.00	0	25	0	25	n	0.00	0	36	0	36	n	0.00	0	24	0	24	n	0.00	0	26	0	26	n	ENSMUSG00000060601.14	Nr1h2	chr7	protein_coding	nuclear receptor subfamily 1, group H, member 2
known_NIR_17534	chr7	44201788	44201931	-	44201669	44201931	A3SS	ENSMUST00000107912.8	known	0.00	0	47	0	47	n	0.00	0	38	0	38	n	0.00	0	50	0	50	n	0.00	0	38	0	38	n	0.04	2	50	2	50	y	0.00	0	31	0	31	n	0.03	2	66	2	66	y	0.00	0	22	0	22	n	0.00	0	25	0	25	n	0.00	0	47	0	47	n	0.00	0	31	0	31	n	0.00	0	69	0	69	n	ENSMUSG00000060601.14	Nr1h2	chr7	protein_coding	nuclear receptor subfamily 1, group H, member 2
known_NIR_17535	chr7	44202143	44203003	-	44202178	44203003	A3SS	ENSMUST00000073488.12	known	0.00	0	49	0	49	n	0.03	1	36	1	36	n	0.00	0	60	0	60	n	0.00	0	60	0	60	n	0.00	0	75	0	75	n	0.19	6	26	6	26	y	0.02	1	59	1	59	n	0.05	2	42	2	42	y	0.02	1	51	1	51	n	0.00	0	106	0	106	n	0.00	0	62	0	62	n	0.01	1	69	1	69	n	ENSMUSG00000060601.14	Nr1h2	chr7	protein_coding	nuclear receptor subfamily 1, group H, member 2
known_NIR_17536	chr7	44202143	44203003	-	44202181	44203003	A3SS	ENSMUST00000107912.8	known	0.00	0	21	0	21	n	0.03	1	32	1	32	n	0.00	0	48	0	48	n	0.00	0	32	0	32	n	0.00	0	38	0	38	n	0.25	6	18	6	18	y	0.02	1	42	1	42	n	0.08	2	22	2	22	y	0.05	1	18	1	18	n	0.00	0	37	0	37	n	0.00	0	31	0	31	n	0.02	1	53	1	53	n	ENSMUSG00000060601.14	Nr1h2	chr7	protein_coding	nuclear receptor subfamily 1, group H, member 2
known_NIR_17537	chr7	44202178	44203003	-	44202181	44203003	A3SS	ENSMUST00000107912.8	known	0.70	49	21	49	21	y	0.53	36	32	36	32	y	0.56	60	48	60	48	y	0.65	60	32	60	32	y	0.66	75	38	75	38	y	0.59	26	18	26	18	y	0.58	59	42	59	42	y	0.66	42	22	42	22	y	0.74	51	18	51	18	y	0.74	106	37	106	37	y	0.67	62	31	62	31	y	0.57	69	53	69	53	y	ENSMUSG00000060601.14	Nr1h2	chr7	protein_coding	nuclear receptor subfamily 1, group H, member 2
known_NIR_17538	chr7	44203132	44203247	-	44203132	44203233	A5SS	ENSMUST00000073488.12	known	0.00	0	42	0	42	n	0.02	1	49	1	49	n	0.01	1	71	1	71	n	0.00	0	58	0	58	n	0.01	1	92	1	92	n	0.03	1	37	1	37	n	0.04	3	71	3	71	y	0.00	0	46	0	46	n	0.00	0	49	0	49	n	0.01	1	95	1	95	n	0.00	0	50	0	50	n	0.00	0	72	0	72	n	ENSMUSG00000060601.14	Nr1h2	chr7	protein_coding	nuclear receptor subfamily 1, group H, member 2
known_NIR_17539	chr7	44245692	44247808	+	44245692	44247805	A3SS	ENSMUST00000207493.2	known	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.17	2	10	2	10	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	ENSMUSG00000062785.15	Kcnc3	chr7	protein_coding	potassium voltage gated channel, Shaw-related subfamily, member 3
known_NIR_17540	chr7	44305108;44306864	44306841;44307359	-	44305108	44307359	cassetteExon	ENSMUST00000107899.10	known	0.77	10.0	3	9;11	3	y	0.67	2.0	1	2;2	1	n	0.87	13.0	2	13;13	2	y	1.00	5.0	0	5;5	0	n	1.00	16.0	0	16;16	0	n	0.88	7.5	1	7;8	1	n	0.56	9.0	7	9;9	7	y	1.00	9.5	0	10;9	0	n	0.71	7.5	3	7;8	3	y	0.72	10.5	4	8;13	4	y	0.29	2.5	6	3;2	6	y	0.91	10.0	1	10;10	1	n	ENSMUSG00000030739.19	Myh14	chr7	protein_coding	myosin, heavy polypeptide 14
known_NIR_17541	chr7	4434633	4445593	-	4438097	4445593	3pMXE	ENSMUST00000138798.2	known	0.24	4	13	4	13	y	0.00	0	7	0	7	n	0.13	7	48	7	48	y	0.00	0	10	0	10	n	0.11	3	24	3	24	y	0.21	3	11	3	11	y	0.10	2	19	2	19	y	0.07	2	26	2	26	y	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.09	1	10	1	10	n	0.06	1	17	1	17	n	ENSMUSG00000008435.16	Rdh13	chr7	protein_coding	retinol dehydrogenase 13 (all-trans and 9-cis)
known_NIR_17542	chr7	4434633;4438097	4437993;4445593	-	4434633	4445593	cassetteExon	ENSMUST00000119485.8	known	0.72	10.5	4	8;13	4	y	1.00	7.0	0	7;7	0	n	0.86	43.5	7	39;48	7	y	1.00	8.5	0	7;10	0	n	0.88	22.0	3	20;24	3	y	0.82	13.5	3	16;11	3	y	0.90	18.0	2	17;19	2	y	0.90	18.5	2	11;26	2	y	1.00	6.0	0	6;6	0	n	1.00	10.5	0	10;11	0	n	0.89	8.5	1	7;10	1	n	0.94	16.0	1	15;17	1	n	ENSMUSG00000008435.16	Rdh13	chr7	protein_coding	retinol dehydrogenase 13 (all-trans and 9-cis)
known_NIR_17543	chr7	44398153	44401539	+	44398075	44401539	A5SS	ENSMUST00000002275.15	known	0.03	1	36	1	36	n	0.00	0	28	0	28	n	0.04	2	51	2	51	y	0.00	0	53	0	53	n	0.00	0	56	0	56	n	0.00	0	27	0	27	n	0.00	0	34	0	34	n	0.06	2	30	2	30	y	0.00	0	32	0	32	n	0.00	0	45	0	45	n	0.08	2	24	2	24	y	0.04	2	50	2	50	y	ENSMUSG00000002205.17	Vrk3	chr7	protein_coding	vaccinia related kinase 3
known_NIR_17544	chr7	44398821	44401539	+	44398075	44401539	A5SS	ENSMUST00000002275.15	known	0.03	1	36	1	36	n	0.10	3	28	3	28	y	0.06	3	51	3	51	y	0.09	5	53	5	53	y	0.03	2	56	2	56	y	0.10	3	27	3	27	y	0.13	5	34	5	34	y	0.06	2	30	2	30	y	0.06	2	32	2	32	y	0.12	6	45	6	45	y	0.14	4	24	4	24	y	0.00	0	50	0	50	n	ENSMUSG00000002205.17	Vrk3	chr7	protein_coding	vaccinia related kinase 3
known_NIR_17545	chr7	44407319	44408449	+	44407319	44409124	A3SS	ENSMUST00000002275.15	known	0.00	0	77	0	77	n	0.00	0	63	0	63	n	0.02	2	93	2	93	y	0.00	0	76	0	76	n	0.01	1	109	1	109	n	0.02	1	43	1	43	n	0.01	1	103	1	103	n	0.01	1	66	1	66	n	0.02	1	62	1	62	n	0.02	2	114	2	114	y	0.00	0	58	0	58	n	0.00	0	94	0	94	n	ENSMUSG00000002205.17	Vrk3	chr7	protein_coding	vaccinia related kinase 3
known_NIR_17546	chr7	44407319	44408466	+	44407319	44409124	A3SS	ENSMUST00000002275.15	known	0.03	2	77	2	77	y	0.00	0	63	0	63	n	0.01	1	93	1	93	n	0.00	0	76	0	76	n	0.02	2	109	2	109	y	0.04	2	43	2	43	y	0.02	2	103	2	103	y	0.00	0	66	0	66	n	0.02	1	62	1	62	n	0.02	2	114	2	114	y	0.03	2	58	2	58	y	0.01	1	94	1	94	n	ENSMUSG00000002205.17	Vrk3	chr7	protein_coding	vaccinia related kinase 3
known_NIR_17547	chr7	44420346	44426646	+	44420346;44424959	44424800;44426646	ES	ENSMUST00000002275.15	known	0.01	1	114.0	1	107;121	n	0.00	0	146.0	0	125;167	n	0.02	2	124.5	2	87;162	y	0.00	0	88.5	0	72;105	n	0.01	2	142.5	2	110;175	y	0.04	3	67.0	3	49;85	y	0.01	2	156.5	2	115;198	y	0.00	0	78.5	0	57;100	n	0.01	1	86.5	1	71;102	n	0.00	0	113.0	0	92;134	n	0.02	3	121.0	3	87;155	y	0.01	1	114.5	1	106;123	n	ENSMUSG00000002205.17	Vrk3	chr7	protein_coding	vaccinia related kinase 3
known_NIR_17548	chr7	4445748;4446770	4446736;4447202	-	4445748	4447202	cassetteExon	ENSMUST00000119485.8	known	0.00	0.0	11	0;0	11	n	0.00	0.0	7	0;0	7	n	0.18	10.5	49	9;12	49	y	0.05	0.5	10	1;0	10	n	0.08	2.0	22	4;0	22	n	0.24	4.0	13	4;4	13	y	0.09	2.0	20	2;2	20	y	0.04	0.5	13	1;0	13	n	0.15	2.0	11	2;2	11	y	0.06	1.0	15	1;1	15	n	0.22	2.0	7	3;1	7	n	0.12	2.5	19	3;2	19	y	ENSMUSG00000008435.16	Rdh13	chr7	protein_coding	retinol dehydrogenase 13 (all-trans and 9-cis)
known_NIR_17549	chr7	44462666	44464413	-	44462944	44464413	A3SS	ENSMUST00000047356.11	known	0.00	0	553	0	553	n	0.00	0	592	0	592	n	0.01	10	1176	10	1176	y	0.00	0	366	0	366	n	0.01	12	1218	12	1218	y	0.00	0	693	0	693	n	0.01	12	912	12	912	y	0.00	0	633	0	633	n	0.00	0	344	0	344	n	0.01	9	650	9	650	y	0.00	0	467	0	467	n	0.00	0	643	0	643	n	ENSMUSG00000038539.16	Atf5	chr7	protein_coding	activating transcription factor 5
known_NIR_17550	chr7	44464706	44464906	-	44464706	44465826	A5SS	ENSMUST00000047356.11	known	0.00	3	1299	3	1299	y	0.01	7	1317	7	1317	y	0.00	3	3124	3	3124	y	0.00	1	1044	1	1044	n	0.00	10	2809	10	2809	y	0.00	2	1677	2	1677	y	0.00	2	2135	2	2135	y	0.00	1	1401	1	1401	n	0.01	6	808	6	808	y	0.00	4	1415	4	1415	y	0.01	9	1185	9	1185	y	0.00	3	1725	3	1725	y	ENSMUSG00000038539.16	Atf5	chr7	protein_coding	activating transcription factor 5
known_NIR_17551	chr7	44465907	44481540	+	44465907	44477911	3pMXE	ENSMUST00000057195.17	known	0.00	0	14	0	14	n	0.57	13	10	13	10	y	0.65	32	17	32	17	y	0.60	15	10	15	10	y	0.63	24	14	24	14	y	0.69	22	10	22	10	y	0.51	27	26	27	26	y	0.00	0	10	0	10	n	0.22	6	21	6	21	y	0.53	23	20	23	20	y	0.00	0	13	0	13	n	0.61	20	13	20	13	y	ENSMUSG00000109511.2	Nup62	chr7	protein_coding	nucleoporin 62
known_NIR_17552	chr7	4447320	4448413	-	4447320	4447977	5pMXE	ENSMUST00000138798.2	known	-	-	-	-	-	-	-	-	-	-	-	-	0.10	3	27	3	27	y	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.00	0	7	0	7	n	0.50	1	1	1	1	n	0.43	3	4	3	4	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.40	2	3	2	3	n	ENSMUSG00000008435.16	Rdh13	chr7	protein_coding	retinol dehydrogenase 13 (all-trans and 9-cis)
known_NIR_17553	chr7	4447320	4448413	-	4447320	4448446	A5SS	ENSMUST00000119485.8	known	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.14	3	18	3	18	y	0.00	0	9	0	9	n	0.07	1	13	1	13	n	0.00	0	8	0	8	n	0.05	1	21	1	21	n	0.27	3	8	3	8	y	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.10	1	9	1	9	n	0.20	2	8	2	8	y	ENSMUSG00000008435.16	Rdh13	chr7	protein_coding	retinol dehydrogenase 13 (all-trans and 9-cis)
known_NIR_17554	chr7	4447320	4448446	-	4447320	4447977	5pMXE	ENSMUST00000138798.2	known	1.00	8	0	8	0	n	1.00	8	0	8	0	n	0.40	18	27	18	27	y	0.75	9	3	9	3	y	0.81	13	3	13	3	y	0.53	8	7	8	7	y	0.95	21	1	21	1	n	0.67	8	4	8	4	y	0.64	9	5	9	5	y	0.90	9	1	9	1	n	1.00	9	0	9	0	n	0.73	8	3	8	3	y	ENSMUSG00000008435.16	Rdh13	chr7	protein_coding	retinol dehydrogenase 13 (all-trans and 9-cis)
known_NIR_17555	chr7	4447320;4448121	4447977;4448446	-	4447320	4448446	cassetteExon	ENSMUST00000119485.8	known	0.00	0.0	8	0;0	8	n	0.00	0.0	8	0;0	8	n	0.45	14.5	18	27;2	18	y	0.14	1.5	9	3;0	9	n	0.10	1.5	13	3;0	13	n	0.30	3.5	8	7;0	8	n	0.05	1.0	21	1;1	21	n	0.20	2.0	8	4;0	8	n	0.22	2.5	9	5;0	9	n	0.10	1.0	9	1;1	9	n	0.00	0.0	9	0;0	9	n	0.16	1.5	8	3;0	8	n	ENSMUSG00000008435.16	Rdh13	chr7	protein_coding	retinol dehydrogenase 13 (all-trans and 9-cis)
known_NIR_17556	chr7	44491523	44491610	-	44491523	44491627	A5SS	ENSMUST00000047085.16	known	0.07	6	79	6	79	y	0.03	2	61	2	61	y	0.04	3	68	3	68	y	0.03	2	76	2	76	y	0.03	3	86	3	86	y	0.04	1	23	1	23	n	0.06	5	75	5	75	y	0.02	1	40	1	40	n	0.06	5	74	5	74	y	0.04	3	70	3	70	y	0.09	7	75	7	75	y	0.02	2	99	2	99	y	ENSMUSG00000038520.16	Tbc1d17	chr7	protein_coding	TBC1 domain family, member 17
known_NIR_17557	chr7	44492287	44492419	-	44492340	44492419	A3SS	ENSMUST00000047085.16	known	0.05	5	99	5	99	y	0.00	0	100	0	100	n	0.09	9	88	9	88	y	0.03	3	90	3	90	y	0.05	5	98	5	98	y	0.05	2	38	2	38	y	0.02	2	114	2	114	y	0.02	1	44	1	44	n	0.06	5	78	5	78	y	0.02	3	119	3	119	y	0.05	5	96	5	96	y	0.00	0	132	0	132	n	ENSMUSG00000038520.16	Tbc1d17	chr7	protein_coding	TBC1 domain family, member 17
known_NIR_17558	chr7	44494752	44495299	-	44494792	44495299	A3SS	ENSMUST00000047085.16	known	0.02	1	49	1	49	n	0.05	2	38	2	38	y	0.02	1	65	1	65	n	0.00	0	58	0	58	n	0.04	3	70	3	70	y	0.00	0	22	0	22	n	0.00	0	69	0	69	n	0.00	0	51	0	51	n	0.05	3	61	3	61	y	0.03	2	73	2	73	y	0.08	4	44	4	44	y	0.06	5	85	5	85	y	ENSMUSG00000038520.16	Tbc1d17	chr7	protein_coding	TBC1 domain family, member 17
known_NIR_17559	chr7	44497943	44498273	-	44497958	44498273	A3SS	ENSMUST00000047085.16	known	0.11	3	24	3	24	y	0.00	0	37	0	37	n	0.00	0	39	0	39	n	0.00	0	49	0	49	n	0.00	0	54	0	54	n	0.00	0	22	0	22	n	0.00	0	58	0	58	n	0.00	0	21	0	21	n	0.00	0	45	0	45	n	0.00	0	57	0	57	n	0.00	0	46	0	46	n	0.00	0	54	0	54	n	ENSMUSG00000038520.16	Tbc1d17	chr7	protein_coding	TBC1 domain family, member 17
known_NIR_17560	chr7	44499113	44501995	+	44498772	44501995	A5SS	ENSMUST00000107885.8	known	0.11	3	24	3	24	y	0.23	6	20	6	20	y	0.16	5	27	5	27	y	0.22	5	18	5	18	y	0.22	8	28	8	28	y	0.48	11	12	11	12	y	0.12	4	29	4	29	y	0.27	4	11	4	11	y	0.25	4	12	4	12	y	0.22	6	21	6	21	y	0.20	4	16	4	16	y	0.31	9	20	9	20	y	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
known_NIR_17561	chr7	44499113	44501995	+	44499430	44501995	A5SS	ENSMUST00000152091.8	known	0.19	3	13	3	13	y	0.35	6	11	6	11	y	0.31	5	11	5	11	y	0.28	5	13	5	13	y	0.35	8	15	8	15	y	0.48	11	12	11	12	y	0.13	4	26	4	26	y	0.33	4	8	4	8	y	0.36	4	7	4	7	y	0.32	6	13	6	13	y	0.27	4	11	4	11	y	0.41	9	13	9	13	y	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
known_NIR_17562	chr7	44499430	44501995	+	44498772	44501995	A5SS	ENSMUST00000107885.8	known	0.35	13	24	13	24	y	0.35	11	20	11	20	y	0.29	11	27	11	27	y	0.42	13	18	13	18	y	0.35	15	28	15	28	y	0.50	12	12	12	12	y	0.47	26	29	26	29	y	0.42	8	11	8	11	y	0.37	7	12	7	12	y	0.38	13	21	13	21	y	0.41	11	16	11	16	y	0.39	13	20	13	20	y	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
known_NIR_17563	chr7	44499700	44501995	+	44498772	44501995	A5SS	ENSMUST00000107885.8	known	0.37	14	24	14	24	y	0.38	12	20	12	20	y	0.44	21	27	21	27	y	0.47	16	18	16	18	y	0.26	10	28	10	28	y	0.43	9	12	9	12	y	0.33	14	29	14	29	y	0.00	0	11	0	11	n	0.48	11	12	11	12	y	0.36	12	21	12	21	y	0.45	13	16	13	16	y	0.26	7	20	7	20	y	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
known_NIR_17564	chr7	44499700	44501995	+	44499113	44501995	A5SS	ENSMUST00000150335.2	known	0.82	14	3	14	3	y	0.67	12	6	12	6	y	0.81	21	5	21	5	y	0.76	16	5	16	5	y	0.56	10	8	10	8	y	0.45	9	11	9	11	y	0.78	14	4	14	4	y	0.00	0	4	0	4	n	0.73	11	4	11	4	y	0.67	12	6	12	6	y	0.76	13	4	13	4	y	0.44	7	9	7	9	y	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
known_NIR_17565	chr7	44499700	44501995	+	44499430	44501995	A5SS	ENSMUST00000152091.8	known	0.52	14	13	14	13	y	0.52	12	11	12	11	y	0.66	21	11	21	11	y	0.55	16	13	16	13	y	0.40	10	15	10	15	y	0.43	9	12	9	12	y	0.35	14	26	14	26	y	0.00	0	8	0	8	n	0.61	11	7	11	7	y	0.48	12	13	12	13	y	0.54	13	11	13	11	y	0.35	7	13	7	13	y	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
known_NIR_17566	chr7	44499720	44501995	+	44498772	44501995	A5SS	ENSMUST00000107885.8	known	0.17	5	24	5	24	y	0.00	0	20	0	20	n	0.13	4	27	4	27	y	0.14	3	18	3	18	y	0.10	3	28	3	28	y	0.00	0	12	0	12	n	0.00	0	29	0	29	n	0.08	1	11	1	11	n	0.20	3	12	3	12	y	0.19	5	21	5	21	y	0.27	6	16	6	16	y	0.13	3	20	3	20	y	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
known_NIR_17567	chr7	44499720	44501995	+	44499113	44501995	A5SS	ENSMUST00000150335.2	known	0.62	5	3	5	3	n	0.00	0	6	0	6	n	0.44	4	5	4	5	n	0.38	3	5	3	5	n	0.27	3	8	3	8	y	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.43	3	4	3	4	n	0.45	5	6	5	6	y	0.60	6	4	6	4	y	0.25	3	9	3	9	y	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
known_NIR_17568	chr7	44499720	44501995	+	44499430	44501995	A5SS	ENSMUST00000152091.8	known	0.28	5	13	5	13	y	0.00	0	11	0	11	n	0.27	4	11	4	11	y	0.19	3	13	3	13	y	0.17	3	15	3	15	y	0.00	0	12	0	12	n	0.00	0	26	0	26	n	0.11	1	8	1	8	n	0.30	3	7	3	7	y	0.28	5	13	5	13	y	0.35	6	11	6	11	y	0.19	3	13	3	13	y	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
known_NIR_17569	chr7	44499720	44501995	+	44499700	44501995	A5SS	ENSMUST00000141311.8	known	0.26	5	14	5	14	y	0.00	0	12	0	12	n	0.16	4	21	4	21	y	0.16	3	16	3	16	y	0.23	3	10	3	10	y	0.00	0	9	0	9	n	0.00	0	14	0	14	n	1.00	1	0	1	0	n	0.21	3	11	3	11	y	0.29	5	12	5	12	y	0.32	6	13	6	13	y	0.30	3	7	3	7	y	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
known_NIR_17570	chr7	44499858	44501995	+	44498772	44501995	A5SS	ENSMUST00000107885.8	known	0.33	12	24	12	24	y	0.17	4	20	4	20	y	0.13	4	27	4	27	y	0.40	12	18	12	18	y	0.28	11	28	11	28	y	0.33	6	12	6	12	y	0.19	7	29	7	29	y	0.15	2	11	2	11	y	0.33	6	12	6	12	y	0.16	4	21	4	21	y	0.06	1	16	1	16	n	0.39	13	20	13	20	y	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
known_NIR_17571	chr7	44499858	44501995	+	44499113	44501995	A5SS	ENSMUST00000150335.2	known	0.80	12	3	12	3	y	0.40	4	6	4	6	y	0.44	4	5	4	5	n	0.71	12	5	12	5	y	0.58	11	8	11	8	y	0.35	6	11	6	11	y	0.64	7	4	7	4	y	0.33	2	4	2	4	n	0.60	6	4	6	4	y	0.40	4	6	4	6	y	0.20	1	4	1	4	n	0.59	13	9	13	9	y	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
known_NIR_17572	chr7	44499858	44501995	+	44499430	44501995	A5SS	ENSMUST00000152091.8	known	0.48	12	13	12	13	y	0.27	4	11	4	11	y	0.27	4	11	4	11	y	0.48	12	13	12	13	y	0.42	11	15	11	15	y	0.33	6	12	6	12	y	0.21	7	26	7	26	y	0.20	2	8	2	8	y	0.46	6	7	6	7	y	0.24	4	13	4	13	y	0.08	1	11	1	11	n	0.50	13	13	13	13	y	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
known_NIR_17573	chr7	44499858	44501995	+	44499700	44501995	A5SS	ENSMUST00000141311.8	known	0.46	12	14	12	14	y	0.25	4	12	4	12	y	0.16	4	21	4	21	y	0.43	12	16	12	16	y	0.52	11	10	11	10	y	0.40	6	9	6	9	y	0.33	7	14	7	14	y	1.00	2	0	2	0	n	0.35	6	11	6	11	y	0.25	4	12	4	12	y	0.07	1	13	1	13	n	0.65	13	7	13	7	y	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
known_NIR_17574	chr7	44499858	44501995	+	44499720	44501995	A5SS	ENSMUST00000107880.9	known	0.71	12	5	12	5	y	1.00	4	0	4	0	n	0.50	4	4	4	4	n	0.80	12	3	12	3	y	0.79	11	3	11	3	y	1.00	6	0	6	0	n	1.00	7	0	7	0	n	0.67	2	1	2	1	n	0.67	6	3	6	3	n	0.44	4	5	4	5	n	0.14	1	6	1	6	n	0.81	13	3	13	3	y	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
known_NIR_17575	chr7	44500029	44501995	+	44498772	44501995	A5SS	ENSMUST00000107885.8	known	0.20	6	24	6	24	y	0.00	0	20	0	20	n	0.00	0	27	0	27	n	0.28	7	18	7	18	y	0.10	3	28	3	28	y	0.00	0	12	0	12	n	0.09	3	29	3	29	y	0.08	1	11	1	11	n	0.20	3	12	3	12	y	0.22	6	21	6	21	y	0.24	5	16	5	16	y	0.00	0	20	0	20	n	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
known_NIR_17576	chr7	44500029	44501995	+	44499113	44501995	A5SS	ENSMUST00000150335.2	known	0.67	6	3	6	3	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.58	7	5	7	5	y	0.27	3	8	3	8	y	0.00	0	11	0	11	n	0.43	3	4	3	4	n	0.20	1	4	1	4	n	0.43	3	4	3	4	n	0.50	6	6	6	6	y	0.56	5	4	5	4	n	0.00	0	9	0	9	n	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
known_NIR_17577	chr7	44500029	44501995	+	44499430	44501995	A5SS	ENSMUST00000152091.8	known	0.32	6	13	6	13	y	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.35	7	13	7	13	y	0.17	3	15	3	15	y	0.00	0	12	0	12	n	0.10	3	26	3	26	y	0.11	1	8	1	8	n	0.30	3	7	3	7	y	0.32	6	13	6	13	y	0.31	5	11	5	11	y	0.00	0	13	0	13	n	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
known_NIR_17578	chr7	44500029	44501995	+	44499700	44501995	A5SS	ENSMUST00000141311.8	known	0.30	6	14	6	14	y	0.00	0	12	0	12	n	0.00	0	21	0	21	n	0.30	7	16	7	16	y	0.23	3	10	3	10	y	0.00	0	9	0	9	n	0.18	3	14	3	14	y	1.00	1	0	1	0	n	0.21	3	11	3	11	y	0.33	6	12	6	12	y	0.28	5	13	5	13	y	0.00	0	7	0	7	n	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
known_NIR_17579	chr7	44500029	44501995	+	44499720	44501995	A5SS	ENSMUST00000107880.9	known	0.55	6	5	6	5	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.70	7	3	7	3	y	0.50	3	3	3	3	n	-	-	-	-	-	-	1.00	3	0	3	0	n	0.50	1	1	1	1	n	0.50	3	3	3	3	n	0.55	6	5	6	5	y	0.45	5	6	5	6	y	0.00	0	3	0	3	n	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
known_NIR_17580	chr7	44500029	44501995	+	44499858	44501995	A5SS	ENSMUST00000136232.2	known	0.33	6	12	6	12	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.37	7	12	7	12	y	0.21	3	11	3	11	y	0.00	0	6	0	6	n	0.30	3	7	3	7	y	0.33	1	2	1	2	n	0.33	3	6	3	6	n	0.60	6	4	6	4	y	0.83	5	1	5	1	n	0.00	0	13	0	13	n	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
known_NIR_17581	chr7	44502383	44503186	+	44502383	44503204	A3SS	ENSMUST00000107885.8	known	0.01	2	136	2	136	y	0.00	0	123	0	123	n	0.01	1	132	1	132	n	0.01	1	131	1	131	n	0.02	3	144	3	144	y	0.01	1	67	1	67	n	0.00	0	171	0	171	n	0.00	0	68	0	68	n	0.00	0	124	0	124	n	0.01	1	160	1	160	n	0.01	1	148	1	148	n	0.00	0	165	0	165	n	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
known_NIR_17582	chr7	44506978	44507877	+	44506978	44507587	A3SS	ENSMUST00000145850.8	known	0.07	5	65	5	65	y	0.00	0	51	0	51	n	0.03	2	76	2	76	y	0.00	0	62	0	62	n	0.02	2	95	2	95	y	0.02	1	43	1	43	n	0.02	1	64	1	64	n	0.05	3	55	3	55	y	0.00	0	50	0	50	n	0.04	3	81	3	81	y	0.00	0	53	0	53	n	0.03	2	77	2	77	y	ENSMUSG00000002963.18	Pnkp	chr7	protein_coding	polynucleotide kinase 3'- phosphatase
known_NIR_17583	chr7	44506978	44507877	+	44506978;44507633	44507587;44507877	ES	ENSMUST00000107876.8	known	0.07	5	66.5	5	65;68	y	0.00	0	46.5	0	51;42	n	0.03	2	75.5	2	76;75	y	0.00	0	52.5	0	62;43	n	0.02	2	91.5	2	95;88	y	0.02	1	44.5	1	43;46	n	0.02	1	64.5	1	64;65	n	0.05	3	55.0	3	55;55	y	0.00	0	47.5	0	50;45	n	0.04	3	77.5	3	81;74	y	0.00	0	48.0	0	53;43	n	0.03	2	70.0	2	77;63	y	ENSMUSG00000002963.18	Pnkp	chr7	protein_coding	polynucleotide kinase 3'- phosphatase
known_NIR_17584	chr7	44509369	44509784	+	44509369;44509608	44509501;44509784	ES	ENSMUST00000107876.8	known	0.23	15	50.0	15	57;43	y	0.19	10	43.0	10	36;50	y	0.15	10	56.0	10	64;48	y	0.09	6	64.5	6	76;53	y	0.08	7	82.0	7	82;82	y	0.05	2	37.0	2	37;37	y	0.12	10	74.5	10	82;67	y	0.05	2	37.0	2	32;42	y	0.20	11	44.0	11	52;36	y	0.14	11	68.5	11	79;58	y	0.13	8	54.0	8	56;52	y	0.13	10	66.5	10	62;71	y	ENSMUSG00000002963.18	Pnkp	chr7	protein_coding	polynucleotide kinase 3'- phosphatase
known_NIR_17585	chr7	44511851	44511927	+	44511851	44511923	A3SS	ENSMUST00000107876.8	known	0.00	0	58	0	58	n	0.05	3	54	3	54	y	0.00	0	38	0	38	n	0.00	0	31	0	31	n	0.04	3	64	3	64	y	0.00	0	36	0	36	n	0.00	0	63	0	63	n	0.03	1	28	1	28	n	0.00	0	35	0	35	n	0.03	2	75	2	75	y	0.06	4	63	4	63	y	0.00	0	60	0	60	n	ENSMUSG00000002963.18	Pnkp	chr7	protein_coding	polynucleotide kinase 3'- phosphatase
known_NIR_17586	chr7	44511851	44511993	+	44511851	44511923	A3SS	ENSMUST00000107876.8	known	0.00	0	58	0	58	n	0.00	0	54	0	54	n	0.05	2	38	2	38	y	0.00	0	31	0	31	n	0.03	2	64	2	64	y	0.00	0	36	0	36	n	0.00	0	63	0	63	n	0.00	0	28	0	28	n	0.00	0	35	0	35	n	0.00	0	75	0	75	n	0.00	0	63	0	63	n	0.00	0	60	0	60	n	ENSMUSG00000002963.18	Pnkp	chr7	protein_coding	polynucleotide kinase 3'- phosphatase
known_NIR_17587	chr7	44516936	44518289	-	44516936	44518775	A5SS	ENSMUST00000046575.17	known	0.00	0	66	0	66	n	0.03	2	71	2	71	y	0.00	0	74	0	74	n	0.00	0	78	0	78	n	0.01	1	103	1	103	n	0.00	0	44	0	44	n	0.02	2	79	2	79	y	0.02	1	40	1	40	n	0.01	1	66	1	66	n	0.04	4	91	4	91	y	0.01	1	80	1	80	n	0.03	3	98	3	98	y	ENSMUSG00000038502.18	Ptov1	chr7	protein_coding	prostate tumor over expressed gene 1
known_NIR_17588	chr7	44528938	44529351	-	44527714	44529351	A3SS	ENSMUST00000208253.2	known	0.90	60	7	60	7	y	0.94	99	6	99	6	y	0.88	57	8	57	8	y	0.88	65	9	65	9	y	0.84	76	14	76	14	y	0.74	28	10	28	10	y	0.84	62	12	62	12	y	0.73	27	10	27	10	y	0.91	39	4	39	4	y	0.91	79	8	79	8	y	0.81	58	14	58	14	y	0.84	56	11	56	11	y	ENSMUSG00000002968.10	Med25	chr7	protein_coding	mediator complex subunit 25
known_NIR_17589	chr7	44529894	44530347	-	44529894;44530062	44529991;44530347	ES	ENSMUST00000208253.2	known	0.07	7	91.5	7	86;97	y	0.22	23	80.5	23	65;96	y	0.10	10	85.5	10	75;96	y	0.15	14	81.0	14	67;95	y	0.07	8	107.5	8	96;119	y	0.09	6	59.5	6	54;65	y	0.08	11	121.0	11	112;130	y	0.19	12	52.0	12	38;66	y	0.10	7	66.5	7	48;85	y	0.10	13	111.0	13	107;115	y	0.19	22	94.0	22	95;93	y	0.05	5	94.5	5	86;103	y	ENSMUSG00000002968.10	Med25	chr7	protein_coding	mediator complex subunit 25
known_NIR_17590	chr7	44529894	44530347	-	44530062	44530347	A3SS	ENSMUST00000207206.2	known	0.07	7	97	7	97	y	0.19	23	96	23	96	y	0.09	10	96	10	96	y	0.13	14	95	14	95	y	0.06	8	119	8	119	y	0.08	6	65	6	65	y	0.08	11	130	11	130	y	0.15	12	66	12	66	y	0.08	7	85	7	85	y	0.10	13	115	13	115	y	0.19	22	93	22	93	y	0.05	5	103	5	103	y	ENSMUSG00000002968.10	Med25	chr7	protein_coding	mediator complex subunit 25
known_NIR_17591	chr7	44533388	44533543	-	44532608	44533543	A3SS	ENSMUST00000208253.2	known	0.01	1	105	1	105	n	0.00	0	102	0	102	n	0.02	2	104	2	104	y	0.00	0	88	0	88	n	0.01	2	152	2	152	y	0.00	0	69	0	69	n	0.02	2	127	2	127	y	0.00	0	83	0	83	n	0.01	1	89	1	89	n	0.02	3	119	3	119	y	0.00	0	96	0	96	n	0.02	2	120	2	120	y	ENSMUSG00000002968.10	Med25	chr7	protein_coding	mediator complex subunit 25
known_NIR_17592	chr7	44533674	44533987	-	44533671	44533987	A3SS	ENSMUST00000208253.2	known	0.18	15	70	15	70	y	0.20	18	73	18	73	y	0.15	17	94	17	94	y	0.21	20	74	20	74	y	0.18	27	120	27	120	y	0.18	14	63	14	63	y	0.11	12	99	12	99	y	0.20	16	64	16	64	y	0.19	14	60	14	60	y	0.14	20	128	20	128	y	0.28	24	63	24	63	y	0.17	17	82	17	82	y	ENSMUSG00000002968.10	Med25	chr7	protein_coding	mediator complex subunit 25
known_NIR_17593	chr7	44535694	44541523	-	44535694	44541207	A5SS&ES	ENSMUST00000207278.2	known	0.00	0	74	0	74	n	0.00	0	57	0	57	n	0.00	0	80	0	80	n	0.00	0	92	0	92	n	0.02	2	89	2	89	y	0.02	1	50	1	50	n	0.00	0	93	0	93	n	0.00	0	46	0	46	n	0.04	2	52	2	52	y	0.01	1	83	1	83	n	0.00	0	84	0	84	n	0.01	1	76	1	76	n	ENSMUSG00000002968.10	Med25	chr7	protein_coding	mediator complex subunit 25
known_NIR_17594	chr7	44535694	44541523	-	44535694;44541331	44541207;44541523	ES	ENSMUST00000208253.2	known	0.00	0	77.5	0	74;81	n	0.00	0	58.5	0	57;60	n	0.00	0	78.5	0	80;77	n	0.00	0	91.5	0	92;91	n	0.02	2	88.0	2	89;87	y	0.02	1	54.0	1	50;58	n	0.00	0	89.0	0	93;85	n	0.00	0	48.0	0	46;50	n	0.04	2	48.0	2	52;44	y	0.01	1	91.0	1	83;99	n	0.00	0	79.5	0	84;75	n	0.01	1	77.5	1	76;79	n	ENSMUSG00000002968.10	Med25	chr7	protein_coding	mediator complex subunit 25
known_NIR_17595	chr7	44535694	44541523	-	44541331	44541523	3pMXE	ENSMUST00000207196.2	known	0.00	0	81	0	81	n	0.00	0	60	0	60	n	0.00	0	77	0	77	n	0.00	0	91	0	91	n	0.02	2	87	2	87	y	0.02	1	58	1	58	n	0.00	0	85	0	85	n	0.00	0	50	0	50	n	0.04	2	44	2	44	y	0.01	1	99	1	99	n	0.00	0	75	0	75	n	0.01	1	79	1	79	n	ENSMUSG00000002968.10	Med25	chr7	protein_coding	mediator complex subunit 25
known_NIR_17596	chr7	44541331	44541489	-	44541331	44541523	A5SS	ENSMUST00000208253.2	known	0.02	2	81	2	81	y	0.03	2	60	2	60	y	0.04	3	77	3	77	y	0.00	0	91	0	91	n	0.02	2	87	2	87	y	0.02	1	58	1	58	n	0.01	1	85	1	85	n	0.00	0	50	0	50	n	0.02	1	44	1	44	n	0.00	0	99	0	99	n	0.01	1	75	1	75	n	0.01	1	79	1	79	n	ENSMUSG00000002968.10	Med25	chr7	protein_coding	mediator complex subunit 25
known_NIR_17597	chr7	44541331	44541523	-	44541331	44541569	A5SS	ENSMUST00000207278.2	known	0.98	81	2	81	2	y	0.98	60	1	60	1	n	0.95	77	4	77	4	y	0.96	91	4	91	4	y	0.95	87	5	87	5	y	0.98	58	1	58	1	n	0.94	85	5	85	5	y	0.91	50	5	50	5	y	0.96	44	2	44	2	y	0.97	99	3	99	3	y	0.97	75	2	75	2	y	0.98	79	2	79	2	y	ENSMUSG00000002968.10	Med25	chr7	protein_coding	mediator complex subunit 25
known_NIR_17598	chr7	44546144	44546339	+	44546092	44546339	A5SS	ENSMUST00000071207.14	known	0.05	2	38	2	38	y	0.00	0	29	0	29	n	0.00	0	18	0	18	n	0.00	0	28	0	28	n	0.00	0	40	0	40	n	0.00	0	14	0	14	n	0.00	0	33	0	33	n	0.00	0	16	0	16	n	0.00	0	19	0	19	n	0.00	0	52	0	52	n	0.00	0	27	0	27	n	0.00	0	50	0	50	n	ENSMUSG00000011658.17	Fuz	chr7	protein_coding	fuzzy planar cell polarity protein
known_NIR_17599	chr7	44546768	44546944	+	44546753	44546944	A5SS	ENSMUST00000071207.14	known	0.05	2	41	2	41	y	0.03	1	36	1	36	n	0.00	0	22	0	22	n	0.00	0	36	0	36	n	0.00	0	32	0	32	n	0.00	0	22	0	22	n	0.03	1	39	1	39	n	0.00	0	19	0	19	n	0.00	0	37	0	37	n	0.00	0	50	0	50	n	0.00	0	34	0	34	n	0.00	0	34	0	34	n	ENSMUSG00000011658.17	Fuz	chr7	protein_coding	fuzzy planar cell polarity protein
known_NIR_17600	chr7	44547048	44547940	+	44547048	44547927	A3SS	ENSMUST00000071207.14	known	0.00	0	34	0	34	n	0.08	3	36	3	36	y	0.00	0	19	0	19	n	0.00	0	27	0	27	n	0.00	0	32	0	32	n	0.00	0	10	0	10	n	0.05	2	41	2	41	y	0.00	0	18	0	18	n	0.00	0	21	0	21	n	0.07	4	51	4	51	y	0.06	2	31	2	31	y	0.00	0	27	0	27	n	ENSMUSG00000011658.17	Fuz	chr7	protein_coding	fuzzy planar cell polarity protein
known_NIR_17601	chr7	44547048	44548200	+	44547048	44547927	3pMXE	ENSMUST00000207154.2	known	0.06	2	34	2	34	y	0.00	0	36	0	36	n	0.05	1	19	1	19	n	0.04	1	27	1	27	n	0.00	0	32	0	32	n	0.00	0	10	0	10	n	0.05	2	41	2	41	y	0.00	0	18	0	18	n	0.09	2	21	2	21	y	0.02	1	51	1	51	n	0.00	0	31	0	31	n	0.04	1	27	1	27	n	ENSMUSG00000011658.17	Fuz	chr7	protein_coding	fuzzy planar cell polarity protein
known_NIR_17602	chr7	44547048	44548200	+	44547048;44548124	44547927;44548200	ES	ENSMUST00000071207.14	known	0.06	2	31.0	2	34;28	y	0.00	0	28.0	0	36;20	n	0.05	1	17.5	1	19;16	n	0.04	1	22.0	1	27;17	n	0.00	0	31.0	0	32;30	n	0.00	0	13.5	0	10;17	n	0.04	2	43.0	2	41;45	y	0.00	0	17.0	0	18;16	n	0.08	2	23.0	2	21;25	y	0.02	1	39.5	1	51;28	n	0.00	0	27.5	0	31;24	n	0.04	1	22.5	1	27;18	n	ENSMUSG00000011658.17	Fuz	chr7	protein_coding	fuzzy planar cell polarity protein
known_NIR_17603	chr7	44547048	44548200	+	44547048;44548124	44547940;44548200	ES	ENSMUST00000208600.2	known	0.12	2	14.0	2	0;28	n	0.00	0	11.5	0	3;20	n	0.11	1	8.0	1	0;16	n	0.11	1	8.5	1	0;17	n	0.00	0	15.0	0	0;30	n	0.00	0	8.5	0	0;17	n	0.08	2	23.5	2	2;45	y	0.00	0	8.0	0	0;16	n	0.14	2	12.5	2	0;25	n	0.06	1	16.0	1	4;28	n	0.00	0	13.0	0	2;24	n	0.10	1	9.0	1	0;18	n	ENSMUSG00000011658.17	Fuz	chr7	protein_coding	fuzzy planar cell polarity protein
known_NIR_17604	chr7	44547048	44548200	+	44548124	44548200	A5SS	ENSMUST00000207480.2	known	0.07	2	28	2	28	y	0.00	0	20	0	20	n	0.06	1	16	1	16	n	0.06	1	17	1	17	n	0.00	0	30	0	30	n	0.00	0	17	0	17	n	0.04	2	45	2	45	y	0.00	0	16	0	16	n	0.07	2	25	2	25	y	0.03	1	28	1	28	n	0.00	0	24	0	24	n	0.05	1	18	1	18	n	ENSMUSG00000011658.17	Fuz	chr7	protein_coding	fuzzy planar cell polarity protein
known_NIR_17605	chr7	44552624	44553165	-	44552624;44552951	44552886;44553165	ES	ENSMUST00000166972.9	known	0.99	53	0.5	53	0;1	n	1.00	54	0.0	54	0;0	n	1.00	79	0.0	79	0;0	n	1.00	41	0.0	41	0;0	n	0.94	68	4.0	68	4;4	y	1.00	30	0.0	30	0;0	n	0.94	58	3.5	58	4;3	y	1.00	25	0.0	25	0;0	n	1.00	25	0.0	25	0;0	n	1.00	62	0.0	62	0;0	n	1.00	30	0.0	30	0;0	n	0.99	74	0.5	74	0;1	n	ENSMUSG00000060279.15	Ap2a1	chr7	protein_coding	adaptor-related protein complex 2, alpha 1 subunit
known_NIR_17606	chr7	44558798	44559123	-	44558745	44559123	A3SS	ENSMUST00000166972.9	known	0.00	0	34	0	34	n	0.05	2	39	2	39	y	0.03	2	58	2	58	y	0.00	0	45	0	45	n	0.00	0	81	0	81	n	0.00	0	45	0	45	n	0.00	0	48	0	48	n	0.02	1	59	1	59	n	0.00	0	37	0	37	n	0.05	4	79	4	79	y	0.00	0	54	0	54	n	0.00	0	59	0	59	n	ENSMUSG00000060279.15	Ap2a1	chr7	protein_coding	adaptor-related protein complex 2, alpha 1 subunit
known_NIR_17607	chr7	44565894;44573339	44573231;44578704	-	44565894	44578704	cassetteExon	ENSMUST00000166972.9	known	0.00	0.0	42	0;0	42	n	0.05	2.0	36	3;1	36	n	0.03	2.5	77	2;3	77	y	0.04	2.0	45	3;1	45	n	0.01	0.5	69	1;0	69	n	0.00	0.0	26	0;0	26	n	0.00	0.0	44	0;0	44	n	0.00	0.0	44	0;0	44	n	0.00	0.0	27	0;0	27	n	0.00	0.0	50	0;0	50	n	0.04	1.5	38	1;2	38	n	0.00	0.0	50	0;0	50	n	ENSMUSG00000060279.15	Ap2a1	chr7	protein_coding	adaptor-related protein complex 2, alpha 1 subunit
known_NIR_17608	chr7	44633011	44633504	-	44633011	44633195	A5SS	ENSMUST00000207702.2	known	0.42	5	7	5	7	y	0.75	6	2	6	2	n	0.74	17	6	17	6	y	0.38	3	5	3	5	n	0.60	3	2	3	2	n	0.60	3	2	3	2	n	0.80	8	2	8	2	y	0.50	4	4	4	4	n	1.00	2	0	2	0	n	0.54	7	6	7	6	y	0.50	4	4	4	4	n	0.50	5	5	5	5	y	ENSMUSG00000109324.3	Prmt1	chr7	protein_coding	protein arginine N-methyltransferase 1
known_NIR_17609	chr7	44633011;44633557	44633159;44635707	-	44633011	44635707	cassetteExon	ENSMUST00000207370.2	known	0.26	4.5	13	0;9	13	n	0.20	4.5	18	0;9	18	n	0.11	6.5	52	0;13	52	n	0.08	2.0	22	0;4	22	n	0.03	1.5	52	0;3	52	n	0.08	2.0	24	0;4	24	n	0.05	2.5	44	0;5	44	n	0.11	3.5	28	1;6	28	n	0.08	2.0	22	0;4	22	n	0.08	2.5	30	1;4	30	n	0.05	1.0	20	1;1	20	n	0.09	4.0	41	2;6	41	y	ENSMUSG00000109324.3	Prmt1	chr7	protein_coding	protein arginine N-methyltransferase 1
known_NIR_17610	chr7	44633011;44633557	44633195;44635707	-	44633011	44635707	cassetteExon	ENSMUST00000207370.2	known	0.38	8.0	13	7;9	13	y	0.23	5.5	18	2;9	18	y	0.15	9.5	52	6;13	52	y	0.17	4.5	22	5;4	22	y	0.05	2.5	52	2;3	52	y	0.11	3.0	24	2;4	24	y	0.07	3.5	44	2;5	44	y	0.15	5.0	28	4;6	28	y	0.08	2.0	22	0;4	22	n	0.14	5.0	30	6;4	30	y	0.11	2.5	20	4;1	20	n	0.12	5.5	41	5;6	41	y	ENSMUSG00000109324.3	Prmt1	chr7	protein_coding	protein arginine N-methyltransferase 1
known_NIR_17611	chr7	44633011;44633557	44633504;44635707	-	44633011	44635707	cassetteExon	ENSMUST00000207370.2	known	0.35	7.0	13	5;9	13	y	0.29	7.5	18	6;9	18	y	0.22	15.0	52	17;13	52	y	0.14	3.5	22	3;4	22	y	0.05	3.0	52	3;3	52	y	0.13	3.5	24	3;4	24	y	0.13	6.5	44	8;5	44	y	0.15	5.0	28	4;6	28	y	0.12	3.0	22	2;4	22	y	0.15	5.5	30	7;4	30	y	0.11	2.5	20	4;1	20	n	0.12	5.5	41	5;6	41	y	ENSMUSG00000109324.3	Prmt1	chr7	protein_coding	protein arginine N-methyltransferase 1
known_NIR_17612	chr7	44636794	44640373	+	44636794	44640801	A3SS	ENSMUST00000141011.2	known	0.22	2	7	2	7	n	0.00	0	7	0	7	n	0.22	2	7	2	7	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.33	1	2	1	2	n	0.30	3	7	3	7	y	0.00	0	8	0	8	n	0.14	1	6	1	6	n	0.00	0	11	0	11	n	ENSMUSG00000087138.2	Gm15545	chr7	lncRNA	predicted gene 15545
known_NIR_17613	chr7	44636794	44640801	+	44636794	44641447	A3SS	ENSMUST00000152595.2	known	1.00	7	0	7	0	n	0.64	7	4	7	4	y	0.64	7	4	7	4	y	1.00	3	0	3	0	n	0.83	5	1	5	1	n	0.50	1	1	1	1	n	0.78	7	2	7	2	n	0.40	2	3	2	3	n	0.88	7	1	7	1	n	1.00	8	0	8	0	n	1.00	6	0	6	0	n	0.92	11	1	11	1	n	ENSMUSG00000087138.2	Gm15545	chr7	lncRNA	predicted gene 15545
known_NIR_17614	chr7	44636794	44640801	+	44636794	44643407	A3SS	ENSMUST00000150613.2	known	0.78	7	2	7	2	n	0.88	7	1	7	1	n	1.00	7	0	7	0	n	0.75	3	1	3	1	n	0.83	5	1	5	1	n	0.50	1	1	1	1	n	0.88	7	1	7	1	n	1.00	2	0	2	0	n	0.88	7	1	7	1	n	0.73	8	3	8	3	y	1.00	6	0	6	0	n	1.00	11	0	11	0	n	ENSMUSG00000087138.2	Gm15545	chr7	lncRNA	predicted gene 15545
known_NIR_17615	chr7	44642455	44643235	-	44642455	44643604	A5SS	ENSMUST00000003290.12	known	0.28	5	13	5	13	y	0.13	2	13	2	13	y	0.00	0	5	0	5	n	0.20	4	16	4	16	y	0.18	2	9	2	9	y	0.09	1	10	1	10	n	0.18	4	18	4	18	y	0.11	1	8	1	8	n	0.40	2	3	2	3	n	0.00	0	16	0	16	n	0.25	2	6	2	6	n	0.25	3	9	3	9	y	ENSMUSG00000003190.13	Bcl2l12	chr7	protein_coding	BCL2-like 12 (proline rich)
known_NIR_17616	chr7	44642455	44643787	-	44642455;44643695	44643235;44643787	ES	ENSMUST00000208128.2	known	0.13	2	13.5	2	5;22	y	0.00	0	11.0	0	2;20	n	0.13	1	6.5	1	0;13	n	0.09	1	10.5	1	4;17	n	0.13	2	13.5	2	2;25	y	0.00	0	6.0	0	1;11	n	0.21	3	11.0	3	4;18	y	0.19	2	8.5	2	1;16	n	0.27	2	5.5	2	2;9	y	0.17	2	9.5	2	0;19	n	0.38	3	5.0	3	2;8	y	0.00	0	9.0	0	3;15	n	ENSMUSG00000003190.13	Bcl2l12	chr7	protein_coding	BCL2-like 12 (proline rich)
known_NIR_17617	chr7	44642455	44643787	-	44642455;44643695	44643604;44643787	ES	ENSMUST00000003290.12	known	0.10	2	17.5	2	13;22	y	0.00	0	16.5	0	13;20	n	0.10	1	9.0	1	5;13	n	0.06	1	16.5	1	16;17	n	0.11	2	17.0	2	9;25	y	0.00	0	10.5	0	10;11	n	0.14	3	18.0	3	18;18	y	0.14	2	12.0	2	8;16	y	0.25	2	6.0	2	3;9	y	0.10	2	17.5	2	16;19	y	0.30	3	7.0	3	6;8	y	0.00	0	12.0	0	9;15	n	ENSMUSG00000003190.13	Bcl2l12	chr7	protein_coding	BCL2-like 12 (proline rich)
known_NIR_17618	chr7	44642455	44643787	-	44643695	44643787	3pMXE	ENSMUST00000207443.2	known	0.08	2	22	2	22	y	0.00	0	20	0	20	n	0.07	1	13	1	13	n	0.06	1	17	1	17	n	0.07	2	25	2	25	y	0.00	0	11	0	11	n	0.14	3	18	3	18	y	0.11	2	16	2	16	y	0.18	2	9	2	9	y	0.10	2	19	2	19	y	0.27	3	8	3	8	y	0.00	0	15	0	15	n	ENSMUSG00000003190.13	Bcl2l12	chr7	protein_coding	BCL2-like 12 (proline rich)
known_NIR_17619	chr7	44643900	44645968	-	44643873	44645968	A3SS	ENSMUST00000003290.12	known	0.00	0	21	0	21	n	0.09	2	20	2	20	y	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.17	1	5	1	5	n	0.00	0	22	0	22	n	0.00	0	13	0	13	n	0.00	0	13	0	13	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.08	1	12	1	12	n	ENSMUSG00000003190.13	Bcl2l12	chr7	protein_coding	BCL2-like 12 (proline rich)
known_NIR_17620	chr7	44647490	44648129	+	44647332	44648129	A5SS	ENSMUST00000003284.16	known	0.21	31	117	31	117	y	0.05	7	134	7	134	y	0.07	7	88	7	88	y	0.06	11	169	11	169	y	0.08	14	162	14	162	y	0.12	8	60	8	60	y	0.08	10	118	10	118	y	0.09	9	87	9	87	y	0.11	12	100	12	100	y	0.04	5	132	5	132	y	0.05	7	134	7	134	y	0.04	6	133	6	133	y	ENSMUSG00000003184.16	Irf3	chr7	protein_coding	interferon regulatory factor 3
known_NIR_17621	chr7	44649970	44651097	+	44649970	44650069	3pMXE	ENSMUST00000208143.2	known	0.00	0	169	0	169	n	0.00	0	166	0	166	n	0.00	0	128	0	128	n	0.00	0	168	0	168	n	0.00	0	168	0	168	n	0.00	0	73	0	73	n	0.00	0	146	0	146	n	0.02	2	97	2	97	y	0.00	0	138	0	138	n	0.00	0	202	0	202	n	0.00	0	194	0	194	n	0.00	0	188	0	188	n	ENSMUSG00000003184.16	Irf3	chr7	protein_coding	interferon regulatory factor 3
known_NIR_17622	chr7	44649970	44651097	+	44649970;44650446	44650069;44651097	ES	ENSMUST00000003284.16	known	0.00	0	157.5	0	169;146	n	0.00	0	171.5	0	166;177	n	0.00	0	111.5	0	128;95	n	0.00	0	168.5	0	168;169	n	0.00	0	159.5	0	168;151	n	0.00	0	69.0	0	73;65	n	0.00	0	145.5	0	146;145	n	0.02	2	81.5	2	97;66	y	0.00	0	133.0	0	138;128	n	0.00	0	183.0	0	202;164	n	0.00	0	186.5	0	194;179	n	0.00	0	180.5	0	188;173	n	ENSMUSG00000003184.16	Irf3	chr7	protein_coding	interferon regulatory factor 3
known_NIR_17623	chr7	44649970	44651097	+	44650446	44651097	A5SS	ENSMUST00000207476.2	known	0.00	0	146	0	146	n	0.00	0	177	0	177	n	0.00	0	95	0	95	n	0.00	0	169	0	169	n	0.00	0	151	0	151	n	0.00	0	65	0	65	n	0.00	0	145	0	145	n	0.03	2	66	2	66	y	0.00	0	128	0	128	n	0.00	0	164	0	164	n	0.00	0	179	0	179	n	0.00	0	173	0	173	n	ENSMUSG00000003184.16	Irf3	chr7	protein_coding	interferon regulatory factor 3
known_NIR_17624	chr7	44649970;44650240	44650069;44651097	+	44649970	44651097	cassetteExon	ENSMUST00000207128.2	known	1.00	90.5	0	169;12	0	n	1.00	92.0	0	166;18	0	n	1.00	67.5	0	128;7	0	n	1.00	88.5	0	168;9	0	n	1.00	91.5	0	168;15	0	n	1.00	41.0	0	73;9	0	n	1.00	78.5	0	146;11	0	n	0.96	52.0	2	97;7	2	y	1.00	74.5	0	138;11	0	n	1.00	106.0	0	202;10	0	n	1.00	108.5	0	194;23	0	n	1.00	103.0	0	188;18	0	n	ENSMUSG00000003184.16	Irf3	chr7	protein_coding	interferon regulatory factor 3
known_NIR_17625	chr7	44649970;44650446	44650069;44651588	+	44649970;44651212	44651097;44651588	MXE	ENSMUST00000207128.2	known	0.45	86.0	105.5	169;3	0;211	n	0.40	83.0	127.0	166;0	0;254	n	0.50	64.5	65.0	128;1	0;130	n	0.49	84.0	87.0	168;0	0;174	n	0.45	85.0	102.0	168;2	0;204	n	0.44	36.5	47.0	73;0	0;94	n	0.39	73.5	117.0	146;1	0;234	n	0.44	50.0	62.5	97;3	2;123	y	0.48	69.0	75.0	138;0	0;150	n	0.49	102.5	108.5	202;3	0;217	n	0.44	97.5	124.0	194;1	0;248	n	0.46	94.0	109.5	188;0	0;219	n	ENSMUSG00000003184.16	Irf3	chr7	protein_coding	interferon regulatory factor 3
known_NIR_17626	chr7	44650240	44651097	+	44650446	44651097	A5SS	ENSMUST00000003284.16	known	0.08	12	146	12	146	y	0.09	18	177	18	177	y	0.07	7	95	7	95	y	0.05	9	169	9	169	y	0.09	15	151	15	151	y	0.12	9	65	9	65	y	0.07	11	145	11	145	y	0.10	7	66	7	66	y	0.08	11	128	11	128	y	0.06	10	164	10	164	y	0.11	23	179	23	179	y	0.09	18	173	18	173	y	ENSMUSG00000003184.16	Irf3	chr7	protein_coding	interferon regulatory factor 3
known_NIR_17627	chr7	44650446	44651588	+	44650446;44651212	44651097;44651588	ES	ENSMUST00000003284.16	known	0.02	3	178.5	3	146;211	y	0.00	0	215.5	0	177;254	n	0.01	1	112.5	1	95;130	n	0.00	0	171.5	0	169;174	n	0.01	2	177.5	2	151;204	y	0.00	0	79.5	0	65;94	n	0.01	1	189.5	1	145;234	n	0.03	3	94.5	3	66;123	y	0.00	0	139.0	0	128;150	n	0.02	3	190.5	3	164;217	y	0.00	1	213.5	1	179;248	n	0.00	0	196.0	0	173;219	n	ENSMUSG00000003184.16	Irf3	chr7	protein_coding	interferon regulatory factor 3
known_NIR_17628	chr7	44650446	44651588	+	44651212	44651588	A5SS&ES	ENSMUST00000208958.2	known	0.01	3	211	3	211	y	0.00	0	254	0	254	n	0.01	1	130	1	130	n	0.00	0	174	0	174	n	0.01	2	204	2	204	y	0.00	0	94	0	94	n	0.00	1	234	1	234	n	0.02	3	123	3	123	y	0.00	0	150	0	150	n	0.01	3	217	3	217	y	0.00	1	248	1	248	n	0.00	0	219	0	219	n	ENSMUSG00000003184.16	Irf3	chr7	protein_coding	interferon regulatory factor 3
known_NIR_17629	chr7	44660422	44661547	-	44658396	44661547	A3SS	ENSMUST00000211735.2	known	0.02	1	54	1	54	n	0.00	0	22	0	22	n	0.00	0	51	0	51	n	0.03	1	38	1	38	n	0.02	1	61	1	61	n	0.00	0	28	0	28	n	0.00	0	39	0	39	n	0.00	0	27	0	27	n	0.00	0	29	0	29	n	0.04	2	53	2	53	y	0.00	0	24	0	24	n	0.00	0	56	0	56	n	ENSMUSG00000038406.18	Scaf1	chr7	protein_coding	SR-related CTD-associated factor 1
known_NIR_17630	chr7	44663017	44665504	-	44663017	44663629	5pMXE	ENSMUST00000211735.2	known	0.45	13	16	13	16	y	0.35	7	13	7	13	y	0.50	16	16	16	16	y	0.68	13	6	13	6	y	0.28	8	21	8	21	y	0.35	6	11	6	11	y	0.34	13	25	13	25	y	0.17	3	15	3	15	y	0.20	3	12	3	12	y	0.31	15	34	15	34	y	0.21	3	11	3	11	y	0.39	11	17	11	17	y	ENSMUSG00000038406.18	Scaf1	chr7	protein_coding	SR-related CTD-associated factor 1
known_NIR_17631	chr7	44663017;44663759	44663629;44665504	-	44663017	44665504	cassetteExon	ENSMUST00000085383.11	known	0.41	9.0	13	16;2	13	y	0.50	7.0	7	13;1	7	n	0.41	11.0	16	16;6	16	y	0.32	6.0	13	6;6	13	y	0.59	11.5	8	21;2	8	y	0.48	5.5	6	11;0	6	n	0.50	13.0	13	25;1	13	n	0.71	7.5	3	15;0	3	n	0.67	6.0	3	12;0	3	n	0.53	17.0	15	34;0	15	n	0.65	5.5	3	11;0	3	n	0.44	8.5	11	17;0	11	n	ENSMUSG00000038406.18	Scaf1	chr7	protein_coding	SR-related CTD-associated factor 1
known_NIR_17632	chr7	44663759	44664889	-	44663759	44665504	A5SS	ENSMUST00000210056.2	known	0.60	3	2	3	2	n	0.83	5	1	5	1	n	0.14	1	6	1	6	n	0.40	4	6	4	6	y	0.67	4	2	4	2	n	1.00	6	0	6	0	n	0.90	9	1	9	1	n	1.00	3	0	3	0	n	1.00	4	0	4	0	n	1.00	3	0	3	0	n	1.00	2	0	2	0	n	1.00	2	0	2	0	n	ENSMUSG00000038406.18	Scaf1	chr7	protein_coding	SR-related CTD-associated factor 1
known_NIR_17633	chr7	44704071	44709396	-	44704071;44706308	44706167;44709396	ES	ENSMUST00000210690.2	known	0.04	4	98.5	4	119;78	y	0.00	0	89.5	0	119;60	n	0.00	0	79.0	0	103;55	n	0.00	0	109.5	0	130;89	n	0.03	4	128.5	4	154;103	y	0.00	0	45.0	0	46;44	n	0.01	1	127.5	1	154;101	n	0.00	0	60.0	0	82;38	n	0.00	0	79.0	0	94;64	n	0.00	0	147.0	0	197;97	n	0.00	0	115.0	0	166;64	n	0.04	4	102.0	4	124;80	y	ENSMUSG00000007837.12	Prrg2	chr7	protein_coding	proline-rich Gla (G-carboxyglutamic acid) polypeptide 2
known_NIR_17634	chr7	44704071	44709396	-	44706308	44709396	3pMXE	ENSMUST00000209219.2	known	0.05	4	78	4	78	y	0.00	0	60	0	60	n	0.00	0	55	0	55	n	0.00	0	89	0	89	n	0.04	4	103	4	103	y	0.00	0	44	0	44	n	0.01	1	101	1	101	n	0.00	0	38	0	38	n	0.00	0	64	0	64	n	0.00	0	97	0	97	n	0.00	0	64	0	64	n	0.05	4	80	4	80	y	ENSMUSG00000007837.12	Prrg2	chr7	protein_coding	proline-rich Gla (G-carboxyglutamic acid) polypeptide 2
known_NIR_17635	chr7	44709435	44710165	-	44709435;44709810	44709629;44710165	ES	ENSMUST00000210690.2	known	0.06	6	92.5	6	109;76	y	0.06	5	83.5	5	95;72	y	0.07	5	71.5	5	86;57	y	0.06	6	99.0	6	114;84	y	0.06	8	120.5	8	138;103	y	0.04	2	45.0	2	61;29	y	0.04	5	117.5	5	135;100	y	0.04	2	54.0	2	61;47	y	0.05	4	78.0	4	82;74	y	0.12	18	128.0	18	133;123	y	0.06	6	93.0	6	102;84	y	0.03	3	104.5	3	117;92	y	ENSMUSG00000007837.12	Prrg2	chr7	protein_coding	proline-rich Gla (G-carboxyglutamic acid) polypeptide 2
known_NIR_17636	chr7	44709435;44709783	44709629;44710165	-	44709435	44710165	cassetteExon	ENSMUST00000209920.2	known	0.91	59.5	6	109;10	6	y	0.90	47.5	5	95;0	5	n	0.90	44.5	5	86;3	5	y	0.90	57.0	6	114;0	6	n	0.90	71.0	8	138;4	8	y	0.94	30.5	2	61;0	2	n	0.93	69.0	5	135;3	5	y	0.94	31.5	2	61;2	2	y	0.91	42.0	4	82;2	4	y	0.79	66.5	18	133;0	18	n	0.90	53.0	6	102;4	6	y	0.95	58.5	3	117;0	3	n	ENSMUSG00000007837.12	Prrg2	chr7	protein_coding	proline-rich Gla (G-carboxyglutamic acid) polypeptide 2
known_NIR_17637	chr7	44709435;44709839	44709629;44710165	-	44709435	44710165	cassetteExon	ENSMUST00000209920.2	known	0.91	62.5	6	109;16	6	y	0.91	52.0	5	95;9	5	y	0.91	48.5	5	86;11	5	y	0.91	63.5	6	114;13	6	y	0.90	76.0	8	138;14	8	y	0.94	32.0	2	61;3	2	y	0.94	76.0	5	135;17	5	y	0.94	33.5	2	61;6	2	y	0.93	50.0	4	82;18	4	y	0.81	76.0	18	133;19	18	y	0.91	60.0	6	102;18	6	y	0.95	63.5	3	117;10	3	y	ENSMUSG00000007837.12	Prrg2	chr7	protein_coding	proline-rich Gla (G-carboxyglutamic acid) polypeptide 2
known_NIR_17638	chr7	44709783	44710165	-	44709810	44710165	A3SS	ENSMUST00000210690.2	known	0.12	10	76	10	76	y	0.00	0	72	0	72	n	0.05	3	57	3	57	y	0.00	0	84	0	84	n	0.04	4	103	4	103	y	0.00	0	29	0	29	n	0.03	3	100	3	100	y	0.04	2	47	2	47	y	0.03	2	74	2	74	y	0.00	0	123	0	123	n	0.05	4	84	4	84	y	0.00	0	92	0	92	n	ENSMUSG00000007837.12	Prrg2	chr7	protein_coding	proline-rich Gla (G-carboxyglutamic acid) polypeptide 2
known_NIR_17639	chr7	44709839	44710165	-	44709783	44710165	A3SS	ENSMUST00000210500.2	known	0.62	16	10	16	10	y	1.00	9	0	9	0	n	0.79	11	3	11	3	y	1.00	13	0	13	0	n	0.78	14	4	14	4	y	1.00	3	0	3	0	n	0.85	17	3	17	3	y	0.75	6	2	6	2	n	0.90	18	2	18	2	y	1.00	19	0	19	0	n	0.82	18	4	18	4	y	1.00	10	0	10	0	n	ENSMUSG00000007837.12	Prrg2	chr7	protein_coding	proline-rich Gla (G-carboxyglutamic acid) polypeptide 2
known_NIR_17640	chr7	44709839	44710165	-	44709810	44710165	A3SS	ENSMUST00000210690.2	known	0.17	16	76	16	76	y	0.11	9	72	9	72	y	0.16	11	57	11	57	y	0.13	13	84	13	84	y	0.12	14	103	14	103	y	0.09	3	29	3	29	y	0.15	17	100	17	100	y	0.11	6	47	6	47	y	0.20	18	74	18	74	y	0.13	19	123	19	123	y	0.18	18	84	18	84	y	0.10	10	92	10	92	y	ENSMUSG00000007837.12	Prrg2	chr7	protein_coding	proline-rich Gla (G-carboxyglutamic acid) polypeptide 2
known_NIR_17641	chr7	44710316	44711802	-	44710316	44711012	5pMXE	ENSMUST00000007981.9	known	0.04	2	54	2	54	y	0.07	5	68	5	68	y	0.04	3	70	3	70	y	0.06	5	77	5	77	y	0.02	2	102	2	102	y	0.00	0	34	0	34	n	0.01	1	81	1	81	n	0.04	2	49	2	49	y	0.02	1	55	1	55	n	0.01	1	87	1	87	n	0.08	5	61	5	61	y	0.01	1	83	1	83	n	ENSMUSG00000007837.12	Prrg2	chr7	protein_coding	proline-rich Gla (G-carboxyglutamic acid) polypeptide 2
known_NIR_17642	chr7	44710316	44711802	-	44710316;44711075	44711012;44711802	ES	ENSMUST00000210690.2	known	0.06	2	30.5	2	54;7	y	0.12	5	36.5	5	68;5	y	0.07	3	38.0	3	70;6	y	0.11	5	42.0	5	77;7	y	0.03	2	57.5	2	102;13	y	0.00	0	18.5	0	34;3	n	0.02	1	43.5	1	81;6	n	0.07	2	28.5	2	49;8	y	0.03	1	32.0	1	55;9	n	0.02	1	45.5	1	87;4	n	0.13	5	32.5	5	61;4	y	0.02	1	43.0	1	83;3	n	ENSMUSG00000007837.12	Prrg2	chr7	protein_coding	proline-rich Gla (G-carboxyglutamic acid) polypeptide 2
known_NIR_17643	chr7	44724105	44725493	+	44724111	44725493	A5SS	ENSMUST00000107829.9	known	0.05	3	52	3	52	y	0.03	2	64	2	64	y	0.05	4	77	4	77	y	0.06	5	72	5	72	y	0.06	4	68	4	68	y	0.00	0	23	0	23	n	0.05	3	53	3	53	y	0.04	2	43	2	43	y	0.06	4	66	4	66	y	0.02	2	82	2	82	y	0.08	6	69	6	69	y	0.03	2	60	2	60	y	ENSMUSG00000003421.14	Nosip	chr7	protein_coding	nitric oxide synthase interacting protein
known_NIR_17644	chr7	44725265	44725493	+	44724111	44725493	A5SS	ENSMUST00000107829.9	known	0.00	0	52	0	52	n	0.00	0	64	0	64	n	0.01	1	77	1	77	n	0.00	0	72	0	72	n	0.03	2	68	2	68	y	0.00	0	23	0	23	n	0.02	1	53	1	53	n	0.00	0	43	0	43	n	0.00	0	66	0	66	n	0.00	0	82	0	82	n	0.00	0	69	0	69	n	0.02	1	60	1	60	n	ENSMUSG00000003421.14	Nosip	chr7	protein_coding	nitric oxide synthase interacting protein
known_NIR_17645	chr7	44725852	44725976	+	44725852	44726051	A3SS	ENSMUST00000107829.9	known	0.83	34	7	34	7	y	0.85	44	8	44	8	y	0.96	68	3	68	3	y	0.91	52	5	52	5	y	0.91	75	7	75	7	y	0.98	40	1	40	1	n	0.86	55	9	55	9	y	0.93	37	3	37	3	y	0.95	42	2	42	2	y	0.86	56	9	56	9	y	0.89	65	8	65	8	y	0.82	51	11	51	11	y	ENSMUSG00000003421.14	Nosip	chr7	protein_coding	nitric oxide synthase interacting protein
known_NIR_17646	chr7	44741112	44741520	-	44741112	44741529	A5SS	ENSMUST00000211352.2	known	0.00	0	2	0	2	n	1.00	4	0	4	0	n	0.75	3	1	3	1	n	1.00	4	0	4	0	n	0.62	5	3	5	3	n	0.50	1	1	1	1	n	0.70	7	3	7	3	y	-	-	-	-	-	-	1.00	8	0	8	0	n	1.00	2	0	2	0	n	1.00	2	0	2	0	n	0.50	1	1	1	1	n	ENSMUSG00000019539.12	Rcn3	chr7	protein_coding	reticulocalbin 3, EF-hand calcium binding domain
known_NIR_17647	chr7	44751609	44751826	-	44751609	44751838	A5SS	ENSMUST00000003512.9	known	0.08	24	271	24	271	y	0.08	22	261	22	261	y	0.09	22	217	22	217	y	0.10	32	299	32	299	y	0.08	30	349	30	349	y	0.06	9	148	9	148	y	0.10	40	380	40	380	y	0.09	14	142	14	142	y	0.09	25	261	25	261	y	0.08	46	497	46	497	y	0.11	39	319	39	319	y	0.12	47	347	47	347	y	ENSMUSG00000003420.9	Fcgrt	chr7	protein_coding	Fc fragment of IgG receptor and transporter
known_NIR_17648	chr7	44752017	44752427	-	44752095	44752427	A3SS	ENSMUST00000003512.9	known	0.02	7	310	7	310	y	0.00	0	308	0	308	n	0.03	7	242	7	242	y	0.04	16	357	16	357	y	0.03	13	426	13	426	y	0.07	13	166	13	166	y	0.03	17	488	17	488	y	0.00	0	178	0	178	n	0.03	10	299	10	299	y	0.04	21	492	21	492	y	0.04	17	378	17	378	y	0.04	15	406	15	406	y	ENSMUSG00000003420.9	Fcgrt	chr7	protein_coding	Fc fragment of IgG receptor and transporter
known_NIR_17649	chr7	44771972	44772253	-	44771982	44772253	A3SS	ENSMUST00000003521.10	known	0.02	39	2119	39	2119	y	0.02	58	2559	58	2559	y	0.02	58	2718	58	2718	y	0.02	41	1721	41	1721	y	0.02	45	2480	45	2480	y	0.02	31	1578	31	1578	y	0.02	43	2809	43	2809	y	0.00	0	1529	0	1529	n	0.02	36	1728	36	1728	y	0.02	51	2531	51	2531	y	0.02	46	2388	46	2388	y	0.02	43	2498	43	2498	y	ENSMUSG00000003429.12	Rps11	chr7	protein_coding	ribosomal protein S11
known_NIR_17650	chr7	44772382	44772620	-	44772382	44772587	A5SS	ENSMUST00000003521.10	known	0.00	0	1896	0	1896	n	0.00	0	2103	0	2103	n	0.00	0	2717	0	2717	n	0.00	0	1648	0	1648	n	0.00	8	2484	8	2484	y	0.00	0	1457	0	1457	n	0.00	0	2687	0	2687	n	0.00	0	1465	0	1465	n	0.00	8	1681	8	1681	y	0.00	0	2362	0	2362	n	0.00	0	2248	0	2248	n	0.00	7	2227	7	2227	y	ENSMUSG00000003429.12	Rps11	chr7	protein_coding	ribosomal protein S11
known_NIR_17651	chr7	44775441	44776133	-	44775961	44776133	A3SS&ES	ENSMUST00000150350.9	known	0.00	10	3070	10	3070	y	0.00	10	3537	10	3537	y	0.00	14	4409	14	4409	y	0.00	10	2552	10	2552	y	0.00	16	3840	16	3840	y	0.01	12	2317	12	2317	y	0.00	10	4142	10	4142	y	0.00	7	2192	7	2192	y	0.00	9	2432	9	2432	y	0.00	12	3675	12	3675	y	0.00	15	3469	15	3469	y	0.00	15	3627	15	3627	y	ENSMUSG00000074129.15	Rpl13a	chr7	protein_coding	ribosomal protein L13A
known_NIR_17652	chr7	44775661	44776166	-	44775661	44775902	A5SS&ES	ENSMUST00000150350.9	known	0.00	0	3440	0	3440	n	0.00	0	4134	0	4134	n	0.00	0	4755	0	4755	n	0.00	0	2616	0	2616	n	0.00	0	4325	0	4325	n	0.00	0	2472	0	2472	n	0.00	0	4412	0	4412	n	0.00	0	2427	0	2427	n	0.00	0	2611	0	2611	n	0.00	0	4021	0	4021	n	0.00	3	3744	3	3744	y	0.00	0	4031	0	4031	n	ENSMUSG00000074129.15	Rpl13a	chr7	protein_coding	ribosomal protein L13A
known_NIR_17653	chr7	44775661;44776218	44776166;44776415	-	44775661;44775961	44775902;44776415	MXE	ENSMUST00000209212.2	known	0.44	1372.0	1720.5	0;2744	3440;1	n	0.43	1568.0	2069.5	0;3136	4134;5	n	0.45	1925.0	2380.5	0;3850	4755;6	n	0.47	1167.5	1308.5	0;2335	2616;1	n	0.44	1727.5	2165.0	0;3455	4325;5	n	0.46	1044.0	1237.0	0;2088	2472;2	n	0.45	1839.5	2207.0	0;3679	4412;2	n	0.45	975.5	1213.5	0;1951	2427;0	n	0.46	1126.5	1306.5	0;2253	2611;2	n	0.45	1651.0	2012.5	0;3302	4021;4	n	0.45	1528.5	1874.0	3;3054	3744;4	y	0.44	1609.0	2019.0	0;3218	4031;7	n	ENSMUSG00000074129.15	Rpl13a	chr7	protein_coding	ribosomal protein L13A
known_NIR_17654	chr7	44775661;44776511	44776166;44776633	-	44775661;44775961	44775902;44776633	MXE	ENSMUST00000209711.2	known	0.00	1.5	1720.0	0;3	3440;0	n	0.00	3.0	2067.0	0;6	4134;0	n	0.00	2.5	2380.5	0;5	4755;6	n	0.00	1.0	1308.0	0;2	2616;0	n	0.00	2.0	2162.5	0;4	4325;0	n	0.00	1.5	1236.0	0;3	2472;0	n	0.00	2.5	2206.0	0;5	4412;0	n	0.00	0.0	1213.5	0;0	2427;0	n	0.00	0.0	1305.5	0;0	2611;0	n	0.00	5.0	2010.5	0;10	4021;0	n	0.00	6.0	1874.0	3;9	3744;4	y	0.00	4.0	2015.5	0;8	4031;0	n	ENSMUSG00000074129.15	Rpl13a	chr7	protein_coding	ribosomal protein L13A
known_NIR_17655	chr7	44775661;44776516	44776166;44776633	-	44775661;44775961	44775902;44776633	MXE	ENSMUST00000209711.2	known	0.44	1373.5	1720.0	0;2747	3440;0	n	0.43	1529.5	2067.0	0;3059	4134;0	n	0.46	2044.5	2380.5	0;4089	4755;6	n	0.47	1164.0	1308.0	0;2328	2616;0	n	0.45	1794.0	2162.5	0;3588	4325;0	n	0.47	1112.0	1236.0	0;2224	2472;0	n	0.47	1941.0	2206.0	0;3882	4412;0	n	0.45	975.0	1213.5	0;1950	2427;0	n	0.46	1118.5	1305.5	0;2237	2611;0	n	0.45	1674.0	2010.5	0;3348	4021;0	n	0.43	1442.0	1874.0	3;2881	3744;4	y	0.44	1569.5	2015.5	0;3139	4031;0	n	ENSMUSG00000074129.15	Rpl13a	chr7	protein_coding	ribosomal protein L13A
known_NIR_17656	chr7	44775677	44775902	-	44775661	44775902	A3SS	ENSMUST00000150350.9	known	0.01	37	3440	37	3440	y	0.01	33	4134	33	4134	y	0.01	42	4755	42	4755	y	0.01	15	2616	15	2616	y	0.01	29	4325	29	4325	y	0.01	15	2472	15	2472	y	0.01	33	4412	33	4412	y	0.01	20	2427	20	2427	y	0.01	23	2611	23	2611	y	0.01	37	4021	37	4021	y	0.00	17	3744	17	3744	y	0.01	41	4031	41	4031	y	ENSMUSG00000074129.15	Rpl13a	chr7	protein_coding	ribosomal protein L13A
known_NIR_17657	chr7	44775961	44776415	-	44775961	44776133	5pMXE	ENSMUST00000210792.2	known	0.00	1	3070	1	3070	n	0.00	5	3537	5	3537	y	0.00	6	4409	6	4409	y	0.00	1	2552	1	2552	n	0.00	5	3840	5	3840	y	0.00	2	2317	2	2317	y	0.00	2	4142	2	4142	y	0.00	0	2192	0	2192	n	0.00	2	2432	2	2432	y	0.00	4	3675	4	3675	y	0.00	4	3469	4	3469	y	0.00	7	3627	7	3627	y	ENSMUSG00000074129.15	Rpl13a	chr7	protein_coding	ribosomal protein L13A
known_NIR_17658	chr7	44775961	44776415	-	44775961;44776218	44776133;44776415	ES	ENSMUST00000150350.9	known	0.00	1	2907.0	1	3070;2744	n	0.00	5	3336.5	5	3537;3136	y	0.00	6	4129.5	6	4409;3850	y	0.00	1	2443.5	1	2552;2335	n	0.00	5	3647.5	5	3840;3455	y	0.00	2	2202.5	2	2317;2088	y	0.00	2	3910.5	2	4142;3679	y	0.00	0	2071.5	0	2192;1951	n	0.00	2	2342.5	2	2432;2253	y	0.00	4	3488.5	4	3675;3302	y	0.00	4	3261.5	4	3469;3054	y	0.00	7	3422.5	7	3627;3218	y	ENSMUSG00000074129.15	Rpl13a	chr7	protein_coding	ribosomal protein L13A
known_NIR_17659	chr7	44775961	44776415	-	44776218	44776415	A3SS&ES	ENSMUST00000211037.2	known	0.00	1	2744	1	2744	n	0.00	5	3136	5	3136	y	0.00	6	3850	6	3850	y	0.00	1	2335	1	2335	n	0.00	5	3455	5	3455	y	0.00	2	2088	2	2088	y	0.00	2	3679	2	3679	y	0.00	0	1951	0	1951	n	0.00	2	2253	2	2253	y	0.00	4	3302	4	3302	y	0.00	4	3054	4	3054	y	0.00	7	3218	7	3218	y	ENSMUSG00000074129.15	Rpl13a	chr7	protein_coding	ribosomal protein L13A
known_NIR_17660	chr7	44775961	44776633	-	44775961	44776133	A5SS&ES	ENSMUST00000210073.2	known	0.00	0	3070	0	3070	n	0.00	0	3537	0	3537	n	0.00	6	4409	6	4409	y	0.00	0	2552	0	2552	n	0.00	0	3840	0	3840	n	0.00	0	2317	0	2317	n	0.00	0	4142	0	4142	n	0.00	0	2192	0	2192	n	0.00	0	2432	0	2432	n	0.00	0	3675	0	3675	n	0.00	4	3469	4	3469	y	0.00	0	3627	0	3627	n	ENSMUSG00000074129.15	Rpl13a	chr7	protein_coding	ribosomal protein L13A
known_NIR_17661	chr7	44775961	44776633	-	44776516	44776633	A3SS&ES	ENSMUST00000211037.2	known	0.00	0	2747	0	2747	n	0.00	0	3059	0	3059	n	0.00	6	4089	6	4089	y	0.00	0	2328	0	2328	n	0.00	0	3588	0	3588	n	0.00	0	2224	0	2224	n	0.00	0	3882	0	3882	n	0.00	0	1950	0	1950	n	0.00	0	2237	0	2237	n	0.00	0	3348	0	3348	n	0.00	4	2881	4	2881	y	0.00	0	3139	0	3139	n	ENSMUSG00000074129.15	Rpl13a	chr7	protein_coding	ribosomal protein L13A
known_NIR_17662	chr7	44775961;44776251	44776133;44776415	-	44775961	44776415	cassetteExon	ENSMUST00000209212.2	known	1.00	1535.0	1	3070;0	1	n	1.00	1768.5	5	3537;0	5	n	1.00	2204.5	6	4409;0	6	n	1.00	1276.0	1	2552;0	1	n	1.00	1921.5	5	3840;3	5	y	1.00	1158.5	2	2317;0	2	n	1.00	2071.0	2	4142;0	2	n	1.00	1096.0	0	2192;0	0	n	1.00	1216.0	2	2432;0	2	n	1.00	1837.5	4	3675;0	4	n	1.00	1734.5	4	3469;0	4	n	1.00	1813.5	7	3627;0	7	n	ENSMUSG00000074129.15	Rpl13a	chr7	protein_coding	ribosomal protein L13A
known_NIR_17663	chr7	44775961;44776511	44776133;44776633	-	44775961	44776633	cassetteExon	ENSMUST00000209711.2	known	1.00	1536.5	0	3070;3	0	n	1.00	1771.5	0	3537;6	0	n	1.00	2207.0	6	4409;5	6	y	1.00	1277.0	0	2552;2	0	n	1.00	1922.0	0	3840;4	0	n	1.00	1160.0	0	2317;3	0	n	1.00	2073.5	0	4142;5	0	n	1.00	1096.0	0	2192;0	0	n	1.00	1216.0	0	2432;0	0	n	1.00	1842.5	0	3675;10	0	n	1.00	1739.0	4	3469;9	4	y	1.00	1817.5	0	3627;8	0	n	ENSMUSG00000074129.15	Rpl13a	chr7	protein_coding	ribosomal protein L13A
known_NIR_17664	chr7	44775961;44776511	44776415;44776633	-	44775961	44776633	cassetteExon	ENSMUST00000209711.2	known	1.00	2.0	0	1;3	0	n	1.00	5.5	0	5;6	0	n	0.48	5.5	6	6;5	6	y	1.00	1.5	0	1;2	0	n	1.00	4.5	0	5;4	0	n	1.00	2.5	0	2;3	0	n	1.00	3.5	0	2;5	0	n	-	-	-	-	-	-	1.00	1.0	0	2;0	0	n	1.00	7.0	0	4;10	0	n	0.62	6.5	4	4;9	4	y	1.00	7.5	0	7;8	0	n	ENSMUSG00000074129.15	Rpl13a	chr7	protein_coding	ribosomal protein L13A
known_NIR_17665	chr7	44775961;44776516	44776133;44776633	-	44775961	44776633	cassetteExon	ENSMUST00000209711.2	known	1.00	2908.5	0	3070;2747	0	n	1.00	3298.0	0	3537;3059	0	n	1.00	4249.0	6	4409;4089	6	y	1.00	2440.0	0	2552;2328	0	n	1.00	3714.0	0	3840;3588	0	n	1.00	2270.5	0	2317;2224	0	n	1.00	4012.0	0	4142;3882	0	n	1.00	2071.0	0	2192;1950	0	n	1.00	2334.5	0	2432;2237	0	n	1.00	3511.5	0	3675;3348	0	n	1.00	3175.0	4	3469;2881	4	y	1.00	3383.0	0	3627;3139	0	n	ENSMUSG00000074129.15	Rpl13a	chr7	protein_coding	ribosomal protein L13A
known_NIR_17666	chr7	44775961;44776516	44776415;44776633	-	44775961	44776633	cassetteExon	ENSMUST00000209711.2	known	1.00	1374.0	0	1;2747	0	n	1.00	1532.0	0	5;3059	0	n	1.00	2047.5	6	6;4089	6	y	1.00	1164.5	0	1;2328	0	n	1.00	1796.5	0	5;3588	0	n	1.00	1113.0	0	2;2224	0	n	1.00	1942.0	0	2;3882	0	n	1.00	975.0	0	0;1950	0	n	1.00	1119.5	0	2;2237	0	n	1.00	1676.0	0	4;3348	0	n	1.00	1442.5	4	4;2881	4	y	1.00	1573.0	0	7;3139	0	n	ENSMUSG00000074129.15	Rpl13a	chr7	protein_coding	ribosomal protein L13A
known_NIR_17667	chr7	44776218	44776382	-	44776218	44776415	A5SS	ENSMUST00000150350.9	known	0.00	0	2744	0	2744	n	0.00	1	3136	1	3136	n	0.00	3	3850	3	3850	y	0.00	3	2335	3	2335	y	0.00	0	3455	0	3455	n	0.00	0	2088	0	2088	n	0.00	3	3679	3	3679	y	0.00	0	1951	0	1951	n	0.00	0	2253	0	2253	n	0.00	0	3302	0	3302	n	0.00	0	3054	0	3054	n	0.00	0	3218	0	3218	n	ENSMUSG00000074129.15	Rpl13a	chr7	protein_coding	ribosomal protein L13A
known_NIR_17668	chr7	44776251	44776415	-	44776218	44776415	A3SS	ENSMUST00000150350.9	known	0.00	0	2744	0	2744	n	0.00	0	3136	0	3136	n	0.00	0	3850	0	3850	n	0.00	0	2335	0	2335	n	0.00	3	3455	3	3455	y	0.00	0	2088	0	2088	n	0.00	0	3679	0	3679	n	0.00	0	1951	0	1951	n	0.00	0	2253	0	2253	n	0.00	0	3302	0	3302	n	0.00	0	3054	0	3054	n	0.00	0	3218	0	3218	n	ENSMUSG00000074129.15	Rpl13a	chr7	protein_coding	ribosomal protein L13A
known_NIR_17669	chr7	44776511	44776633	-	44776516	44776633	A3SS	ENSMUST00000150350.9	known	0.00	3	2747	3	2747	y	0.00	6	3059	6	3059	y	0.00	5	4089	5	4089	y	0.00	2	2328	2	2328	y	0.00	4	3588	4	3588	y	0.00	3	2224	3	2224	y	0.00	5	3882	5	3882	y	0.00	0	1950	0	1950	n	0.00	0	2237	0	2237	n	0.00	10	3348	10	3348	y	0.00	9	2881	9	2881	y	0.00	8	3139	8	3139	y	ENSMUSG00000074129.15	Rpl13a	chr7	protein_coding	ribosomal protein L13A
known_NIR_17670	chr7	44776516	44776920	-	44776516;44776698	44776633;44776920	ES	ENSMUST00000150350.9	known	0.00	0	2781.5	0	2747;2816	n	0.00	0	3060.5	0	3059;3062	n	0.00	1	4112.0	1	4089;4135	n	0.00	0	2381.0	0	2328;2434	n	0.00	0	3619.5	0	3588;3651	n	0.00	0	2193.5	0	2224;2163	n	0.00	0	3777.0	0	3882;3672	n	0.00	0	1965.5	0	1950;1981	n	0.00	0	2351.0	0	2237;2465	n	0.00	0	3282.0	0	3348;3216	n	0.00	0	2849.0	0	2881;2817	n	0.00	2	3177.5	2	3139;3216	y	ENSMUSG00000074129.15	Rpl13a	chr7	protein_coding	ribosomal protein L13A
known_NIR_17671	chr7	44776516	44776920	-	44776698	44776920	A3SS&ES	ENSMUST00000209812.2	known	0.00	0	2816	0	2816	n	0.00	0	3062	0	3062	n	0.00	1	4135	1	4135	n	0.00	0	2434	0	2434	n	0.00	0	3651	0	3651	n	0.00	0	2163	0	2163	n	0.00	0	3672	0	3672	n	0.00	0	1981	0	1981	n	0.00	0	2465	0	2465	n	0.00	0	3216	0	3216	n	0.00	0	2817	0	2817	n	0.00	2	3216	2	3216	y	ENSMUSG00000074129.15	Rpl13a	chr7	protein_coding	ribosomal protein L13A
known_NIR_17672	chr7	44776992	44777252	-	44776992	44777966	A5SS	ENSMUST00000209711.2	known	0.04	2	45	2	45	y	0.00	0	37	0	37	n	0.00	0	27	0	27	n	0.00	0	20	0	20	n	0.06	2	30	2	30	y	0.00	0	7	0	7	n	0.09	5	51	5	51	y	0.09	2	20	2	20	y	0.00	0	22	0	22	n	0.00	0	52	0	52	n	0.00	0	38	0	38	n	0.00	0	39	0	39	n	ENSMUSG00000074129.15	Rpl13a	chr7	protein_coding	ribosomal protein L13A
known_NIR_17673	chr7	44776992	44777252	-	44776992	44778124	A5SS	ENSMUST00000150350.9	known	0.00	2	1473	2	1473	y	0.00	0	1628	0	1628	n	0.00	0	2328	0	2328	n	0.00	0	1317	0	1317	n	0.00	2	2134	2	2134	y	0.00	0	1239	0	1239	n	0.00	5	2117	5	2117	y	0.00	2	1124	2	1124	y	0.00	0	1368	0	1368	n	0.00	0	1801	0	1801	n	0.00	0	1528	0	1528	n	0.00	0	1819	0	1819	n	ENSMUSG00000074129.15	Rpl13a	chr7	protein_coding	ribosomal protein L13A
known_NIR_17674	chr7	44776992	44777966	-	44776992	44778124	A5SS	ENSMUST00000150350.9	known	0.03	45	1473	45	1473	y	0.02	37	1628	37	1628	y	0.01	27	2328	27	2328	y	0.01	20	1317	20	1317	y	0.01	30	2134	30	2134	y	0.01	7	1239	7	1239	y	0.02	51	2117	51	2117	y	0.02	20	1124	20	1124	y	0.02	22	1368	22	1368	y	0.03	52	1801	52	1801	y	0.02	38	1528	38	1528	y	0.02	39	1819	39	1819	y	ENSMUSG00000074129.15	Rpl13a	chr7	protein_coding	ribosomal protein L13A
known_NIR_17675	chr7	44780855	44781493	-	44780990	44781493	A3SS	ENSMUST00000211429.2	known	0.54	7	6	7	6	y	1.00	6	0	6	0	n	0.50	6	6	6	6	y	0.60	3	2	3	2	n	0.93	14	1	14	1	n	1.00	3	0	3	0	n	1.00	9	0	9	0	n	1.00	5	0	5	0	n	0.75	12	4	12	4	y	0.63	12	7	12	7	y	1.00	13	0	13	0	n	0.83	25	5	25	5	y	ENSMUSG00000110206.2	Flt3l	chr7	protein_coding	FMS-like tyrosine kinase 3 ligand
known_NIR_17676	chr7	44780990;44781164	44781091;44781493	-	44780990	44781493	cassetteExon	ENSMUST00000211429.2	known	0.43	4.5	6	7;2	6	y	1.00	7.0	0	10;4	0	n	0.25	2.0	6	4;0	6	n	0.43	1.5	2	2;1	2	n	0.85	5.5	1	7;4	1	n	1.00	1.5	0	3;0	0	n	1.00	6.0	0	8;4	0	n	1.00	1.0	0	2;0	0	n	0.62	6.5	4	10;3	4	y	0.36	4.0	7	4;4	7	y	1.00	4.0	0	6;2	0	n	0.52	5.5	5	9;2	5	y	ENSMUSG00000110206.2	Flt3l	chr7	protein_coding	FMS-like tyrosine kinase 3 ligand
known_NIR_17677	chr7	44781164	44781493	-	44780855	44781493	A3SS	ENSMUST00000211542.2	known	0.22	2	7	2	7	n	0.40	4	6	4	6	y	0.00	0	6	0	6	n	0.25	1	3	1	3	n	0.22	4	14	4	14	y	0.00	0	3	0	3	n	0.31	4	9	4	9	y	0.00	0	5	0	5	n	0.20	3	12	3	12	y	0.25	4	12	4	12	y	0.13	2	13	2	13	y	0.07	2	25	2	25	y	ENSMUSG00000110206.2	Flt3l	chr7	protein_coding	FMS-like tyrosine kinase 3 ligand
known_NIR_17678	chr7	44781836	44783306	-	44781836	44782847	A5SS&ES	ENSMUST00000210197.2	known	0.93	13	1	13	1	n	0.76	13	4	13	4	y	1.00	10	0	10	0	n	1.00	9	0	9	0	n	1.00	16	0	16	0	n	0.92	12	1	12	1	n	0.68	15	7	15	7	y	1.00	4	0	4	0	n	0.85	11	2	11	2	y	0.83	20	4	20	4	y	0.71	17	7	17	7	y	0.73	19	7	19	7	y	ENSMUSG00000110206.2	Flt3l	chr7	protein_coding	FMS-like tyrosine kinase 3 ligand
known_NIR_17679	chr7	44781836	44783306	-	44782925	44783306	3pMXE	ENSMUST00000209612.2	known	1.00	13	0	13	0	n	1.00	13	0	13	0	n	1.00	10	0	10	0	n	1.00	9	0	9	0	n	1.00	16	0	16	0	n	1.00	12	0	12	0	n	0.88	15	2	15	2	y	1.00	4	0	4	0	n	1.00	11	0	11	0	n	1.00	20	0	20	0	n	0.89	17	2	17	2	y	0.95	19	1	19	1	n	ENSMUSG00000110206.2	Flt3l	chr7	protein_coding	FMS-like tyrosine kinase 3 ligand
known_NIR_17680	chr7	44781836	44783322	-	44781836	44783306	A5SS	ENSMUST00000209467.2	known	0.00	0	13	0	13	n	0.13	2	13	2	13	y	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.11	2	16	2	16	y	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.33	2	4	2	4	n	0.21	3	11	3	11	y	0.17	4	20	4	20	y	0.06	1	17	1	17	n	0.17	4	19	4	19	y	ENSMUSG00000089989.11	Gm45713	chr7	protein_coding	predicted gene 45713
known_NIR_17681	chr7	44781836;44782925	44782847;44783306	-	44781836	44783306	cassetteExon	ENSMUST00000209467.2	known	0.04	0.5	13	1;0	13	n	0.13	2.0	13	4;0	13	n	0.00	0.0	10	0;0	10	n	0.00	0.0	9	0;0	9	n	0.00	0.0	16	0;0	16	n	0.04	0.5	12	1;0	12	n	0.23	4.5	15	7;2	15	y	0.00	0.0	4	0;0	4	n	0.08	1.0	11	2;0	11	n	0.09	2.0	20	4;0	20	n	0.21	4.5	17	7;2	17	y	0.17	4.0	19	7;1	19	n	ENSMUSG00000089989.11	Gm45713	chr7	protein_coding	predicted gene 45713
known_NIR_17682	chr7	44791526	44792204	-	44791526	44793937	A5SS	ENSMUST00000211169.2	known	0.99	233	2	233	2	y	1.00	278	0	278	0	n	0.97	115	3	115	3	y	0.98	193	3	193	3	y	1.00	225	0	225	0	n	1.00	60	0	60	0	n	1.00	291	0	291	0	n	0.99	118	1	118	1	n	0.99	181	1	181	1	n	0.99	302	4	302	4	y	0.99	232	3	232	3	y	1.00	229	1	229	1	n	ENSMUSG00000007833.16	Aldh16a1	chr7	protein_coding	aldehyde dehydrogenase 16 family, member A1
known_NIR_17683	chr7	44792722	44793937	-	44791526	44793937	A3SS	ENSMUST00000211169.2	known	0.99	163	2	163	2	y	1.00	156	0	156	0	n	0.97	97	3	97	3	y	0.98	148	3	148	3	y	1.00	224	0	224	0	n	1.00	71	0	71	0	n	1.00	179	0	179	0	n	0.99	74	1	74	1	n	0.99	124	1	124	1	n	0.98	194	4	194	4	y	0.98	176	3	176	3	y	1.00	206	1	206	1	n	ENSMUSG00000007833.16	Aldh16a1	chr7	protein_coding	aldehyde dehydrogenase 16 family, member A1
known_NIR_17684	chr7	44796945	44797149	-	44797004	44797149	A3SS	ENSMUST00000209581.2	known	0.03	4	112	4	112	y	0.03	2	76	2	76	y	0.01	1	77	1	77	n	0.08	9	100	9	100	y	0.03	5	138	5	138	y	0.04	2	47	2	47	y	0.04	4	110	4	110	y	0.05	3	58	3	58	y	0.03	3	85	3	85	y	0.04	6	133	6	133	y	0.00	0	90	0	90	n	0.03	4	116	4	116	y	ENSMUSG00000007833.16	Aldh16a1	chr7	protein_coding	aldehyde dehydrogenase 16 family, member A1
known_NIR_17685	chr7	44798164	44799088	-	44798164	44798725	A5SS	ENSMUST00000209581.2	known	0.97	63	2	63	2	y	0.96	48	2	48	2	y	1.00	48	0	48	0	n	0.97	68	2	68	2	y	0.99	79	1	79	1	n	0.96	25	1	25	1	n	1.00	71	0	71	0	n	0.96	44	2	44	2	y	0.98	51	1	51	1	n	1.00	88	0	88	0	n	0.98	80	2	80	2	y	0.99	92	1	92	1	n	ENSMUSG00000007833.16	Aldh16a1	chr7	protein_coding	aldehyde dehydrogenase 16 family, member A1
known_NIR_17686	chr7	44798164	44803816	-	44798164;44799190	44799088;44803816	ES	ENSMUST00000209963.2	known	0.00	0	60.5	0	63;58	n	0.00	0	56.0	0	48;64	n	0.04	2	54.0	2	48;60	y	0.00	0	81.0	0	68;94	n	0.00	0	99.0	0	79;119	n	0.00	0	29.0	0	25;33	n	0.00	0	77.0	0	71;83	n	0.02	1	40.0	1	44;36	n	0.00	0	53.0	0	51;55	n	0.00	0	95.0	0	88;102	n	0.01	1	76.5	1	80;73	n	0.00	0	99.0	0	92;106	n	ENSMUSG00000007833.16	Aldh16a1	chr7	protein_coding	aldehyde dehydrogenase 16 family, member A1
known_NIR_17687	chr7	44798164	44803816	-	44799190	44803816	3pMXE	ENSMUST00000209889.2	known	0.00	0	58	0	58	n	0.00	0	64	0	64	n	0.03	2	60	2	60	y	0.00	0	94	0	94	n	0.00	0	119	0	119	n	0.00	0	33	0	33	n	0.00	0	83	0	83	n	0.03	1	36	1	36	n	0.00	0	55	0	55	n	0.00	0	102	0	102	n	0.01	1	73	1	73	n	0.00	0	106	0	106	n	ENSMUSG00000007833.16	Aldh16a1	chr7	protein_coding	aldehyde dehydrogenase 16 family, member A1
known_NIR_17688	chr7	44803844	44805717	+	44803844	44805730	A3SS	ENSMUST00000210139.2	known	0.06	5	77	5	77	y	0.05	3	62	3	62	y	0.02	1	43	1	43	n	0.04	2	50	2	50	y	0.03	3	91	3	91	y	0.07	1	14	1	14	n	0.03	2	62	2	62	y	0.00	0	38	0	38	n	0.10	6	52	6	52	y	0.04	3	81	3	81	y	0.03	2	65	2	65	y	0.00	0	61	0	61	n	ENSMUSG00000003423.16	Pih1d1	chr7	protein_coding	PIH1 domain containing 1
known_NIR_17689	chr7	44803964	44805730	+	44803844	44805730	A5SS	ENSMUST00000210139.2	known	0.37	45	77	45	77	y	0.38	38	62	38	62	y	0.49	42	43	42	43	y	0.40	33	50	33	50	y	0.42	67	91	67	91	y	0.46	12	14	12	14	y	0.47	55	62	55	62	y	0.40	25	38	25	38	y	0.44	41	52	41	52	y	0.38	50	81	50	81	y	0.42	47	65	47	65	y	0.49	58	61	58	61	y	ENSMUSG00000003423.16	Pih1d1	chr7	protein_coding	PIH1 domain containing 1
known_NIR_17690	chr7	44805479	44805730	+	44803844	44805730	A5SS	ENSMUST00000210139.2	known	0.01	1	77	1	77	n	0.02	1	62	1	62	n	0.00	0	43	0	43	n	0.00	0	50	0	50	n	0.02	2	91	2	91	y	0.12	2	14	2	14	y	0.05	3	62	3	62	y	0.03	1	38	1	38	n	0.04	2	52	2	52	y	0.00	0	81	0	81	n	0.02	1	65	1	65	n	0.00	0	61	0	61	n	ENSMUSG00000003423.16	Pih1d1	chr7	protein_coding	PIH1 domain containing 1
known_NIR_17691	chr7	44805479	44805730	+	44803964	44805730	A5SS	ENSMUST00000085375.13	known	0.02	1	45	1	45	n	0.03	1	38	1	38	n	0.00	0	42	0	42	n	0.00	0	33	0	33	n	0.03	2	67	2	67	y	0.14	2	12	2	12	y	0.05	3	55	3	55	y	0.04	1	25	1	25	n	0.05	2	41	2	41	y	0.00	0	50	0	50	n	0.02	1	47	1	47	n	0.00	0	58	0	58	n	ENSMUSG00000003423.16	Pih1d1	chr7	protein_coding	PIH1 domain containing 1
known_NIR_17692	chr7	4485448	4485583	-	4485428	4485583	A3SS	ENSMUST00000124248.8	known	0.00	0	60	0	60	n	0.00	0	65	0	65	n	0.00	0	62	0	62	n	0.00	0	37	0	37	n	0.01	1	83	1	83	n	0.00	0	35	0	35	n	0.00	0	68	0	68	n	0.00	0	34	0	34	n	0.00	0	35	0	35	n	0.03	2	72	2	72	y	0.00	0	58	0	58	n	0.00	0	63	0	63	n	ENSMUSG00000019254.17	Ppp1r12c	chr7	protein_coding	protein phosphatase 1, regulatory subunit 12C
known_NIR_17693	chr7	4486184	4486340	-	4486187	4486340	A3SS	ENSMUST00000124248.8	known	0.88	43	6	43	6	y	0.65	33	18	33	18	y	0.83	62	13	62	13	y	0.84	42	8	42	8	y	0.92	76	7	76	7	y	0.82	36	8	36	8	y	0.83	63	13	63	13	y	0.57	20	15	20	15	y	0.89	31	4	31	4	y	0.86	61	10	61	10	y	0.78	46	13	46	13	y	0.79	37	10	37	10	y	ENSMUSG00000019254.17	Ppp1r12c	chr7	protein_coding	protein phosphatase 1, regulatory subunit 12C
known_NIR_17694	chr7	44887996	44888384	-	44887996	44888084	5pMXE	ENSMUST00000098461.10	known	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.30	3	7	3	7	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	ENSMUSG00000030798.16	Cd37	chr7	protein_coding	CD37 antigen
known_NIR_17695	chr7	4500334	4504265	-	4500334;4500545	4500415;4504265	ES	ENSMUST00000124248.8	known	0.03	1	30.0	1	27;33	n	0.06	2	30.0	2	28;32	y	0.07	4	54.0	4	54;54	y	0.00	0	35.5	0	37;34	n	0.01	1	75.5	1	80;71	n	0.00	0	18.0	0	20;16	n	0.05	2	36.5	2	40;33	y	0.00	0	25.0	0	25;25	n	0.00	0	37.0	0	40;34	n	0.02	1	40.5	1	45;36	n	0.03	1	29.0	1	28;30	n	0.05	2	38.5	2	34;43	y	ENSMUSG00000019254.17	Ppp1r12c	chr7	protein_coding	protein phosphatase 1, regulatory subunit 12C
known_NIR_17696	chr7	45030042	45030141	-	45026867	45030141	A3SS	ENSMUST00000074575.11	known	0.01	2	205	2	205	y	0.02	6	278	6	278	y	0.03	9	296	9	296	y	0.03	6	207	6	207	y	0.05	17	360	17	360	y	0.04	9	198	9	198	y	0.06	17	260	17	260	y	0.03	6	188	6	188	y	0.03	6	198	6	198	y	0.03	7	240	7	240	y	0.03	6	229	6	229	y	0.06	17	261	17	261	y	ENSMUSG00000063511.12	Snrnp70	chr7	protein_coding	small nuclear ribonucleoprotein 70 (U1)
known_NIR_17697	chr7	45030242	45031249	-	45030242	45033228	A5SS	ENSMUST00000074575.11	known	0.06	8	126	8	126	y	0.06	6	102	6	102	y	0.02	3	189	3	189	y	0.03	3	87	3	87	y	0.04	7	181	7	181	y	0.03	3	101	3	101	y	0.04	5	134	5	134	y	0.02	2	91	2	91	y	0.04	4	97	4	97	y	0.07	8	101	8	101	y	0.05	6	104	6	104	y	0.05	8	144	8	144	y	ENSMUSG00000063511.12	Snrnp70	chr7	protein_coding	small nuclear ribonucleoprotein 70 (U1)
known_NIR_17698	chr7	45030242	45032549	-	45030242	45031249	A5SS	ENSMUST00000211290.2	known	0.27	3	8	3	8	y	0.25	2	6	2	6	n	0.50	3	3	3	3	n	0.57	4	3	4	3	n	0.56	9	7	9	7	y	0.50	3	3	3	3	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.27	3	8	3	8	y	0.40	4	6	4	6	y	0.38	5	8	5	8	y	ENSMUSG00000063511.12	Snrnp70	chr7	protein_coding	small nuclear ribonucleoprotein 70 (U1)
known_NIR_17699	chr7	45030242	45033228	-	45030242;45032608	45031249;45033228	ES	ENSMUST00000211290.2	known	0.82	126	28.0	126	8;48	y	0.74	102	36.0	102	6;66	y	0.83	189	38.5	189	3;74	y	0.69	87	39.0	87	3;75	y	0.80	181	44.5	181	7;82	y	0.77	101	30.0	101	3;57	y	0.83	134	27.0	134	5;49	y	0.81	91	22.0	91	2;42	y	0.75	97	33.0	97	4;62	y	0.68	101	48.5	101	8;89	y	0.76	104	32.0	104	6;58	y	0.75	144	49.0	144	8;90	y	ENSMUSG00000063511.12	Snrnp70	chr7	protein_coding	small nuclear ribonucleoprotein 70 (U1)
known_NIR_17700	chr7	45030242	45033228	-	45032608	45033228	A3SS	ENSMUST00000211366.2	known	0.72	126	48	126	48	y	0.61	102	66	102	66	y	0.72	189	74	189	74	y	0.54	87	75	87	75	y	0.69	181	82	181	82	y	0.64	101	57	101	57	y	0.73	134	49	134	49	y	0.68	91	42	91	42	y	0.61	97	62	97	62	y	0.53	101	89	101	89	y	0.64	104	58	104	58	y	0.62	144	90	144	90	y	ENSMUSG00000063511.12	Snrnp70	chr7	protein_coding	small nuclear ribonucleoprotein 70 (U1)
known_NIR_17701	chr7	45030242;45032608	45032549;45033228	-	45030242	45033228	cassetteExon	ENSMUST00000074575.11	known	0.17	25.5	126	3;48	126	y	0.25	34.0	102	2;66	102	y	0.17	38.5	189	3;74	189	y	0.31	39.5	87	4;75	87	y	0.20	45.5	181	9;82	181	y	0.23	30.0	101	3;57	101	y	0.16	25.0	134	1;49	134	n	0.19	21.0	91	0;42	91	n	0.25	31.5	97	1;62	97	n	0.31	46.0	101	3;89	101	y	0.23	31.0	104	4;58	104	y	0.25	47.5	144	5;90	144	y	ENSMUSG00000063511.12	Snrnp70	chr7	protein_coding	small nuclear ribonucleoprotein 70 (U1)
known_NIR_17702	chr7	45041749	45042129	-	45041749	45044083	A5SS	ENSMUST00000074575.11	known	0.00	0	269	0	269	n	0.00	1	230	1	230	n	0.00	0	340	0	340	n	0.00	1	267	1	267	n	0.00	0	351	0	351	n	0.00	0	186	0	186	n	0.00	0	283	0	283	n	0.01	2	211	2	211	y	0.00	0	202	0	202	n	0.00	0	293	0	293	n	0.00	1	225	1	225	n	0.01	2	268	2	268	y	ENSMUSG00000063511.12	Snrnp70	chr7	protein_coding	small nuclear ribonucleoprotein 70 (U1)
known_NIR_17703	chr7	45044239	45044933	-	45044239	45044517	5pMXE	ENSMUST00000211378.2	known	0.90	120	13	120	13	y	0.92	112	10	112	10	y	0.90	209	24	209	24	y	0.90	158	18	158	18	y	0.92	209	19	209	19	y	0.92	135	11	135	11	y	0.91	143	15	143	15	y	0.90	118	13	118	13	y	0.89	120	15	120	15	y	0.92	149	13	149	13	y	0.89	129	16	129	16	y	0.89	152	18	152	18	y	ENSMUSG00000063511.12	Snrnp70	chr7	protein_coding	small nuclear ribonucleoprotein 70 (U1)
known_NIR_17704	chr7	45044239;45044596	45044517;45044933	-	45044239	45044933	cassetteExon	ENSMUST00000074575.11	known	0.07	9.0	120	13;5	120	y	0.09	10.5	112	10;11	112	y	0.08	17.5	209	24;11	209	y	0.10	17.0	158	18;16	158	y	0.07	15.5	209	19;12	209	y	0.07	10.5	135	11;10	135	y	0.08	12.0	143	15;9	143	y	0.07	9.5	118	13;6	118	y	0.11	15.5	120	15;16	120	y	0.07	11.0	149	13;9	149	y	0.10	14.5	129	16;13	129	y	0.09	15.0	152	18;12	152	y	ENSMUSG00000063511.12	Snrnp70	chr7	protein_coding	small nuclear ribonucleoprotein 70 (U1)
known_NIR_17705	chr7	45071558	45071809	-	45071630	45071809	A3SS	ENSMUST00000211214.2	known	0.00	0	33	0	33	n	0.06	2	31	2	31	y	0.04	2	51	2	51	y	0.00	0	28	0	28	n	0.00	0	37	0	37	n	0.00	0	18	0	18	n	0.03	1	32	1	32	n	0.00	0	28	0	28	n	0.00	0	23	0	23	n	0.02	1	43	1	43	n	0.00	0	43	0	43	n	0.00	0	32	0	32	n	ENSMUSG00000003868.15	Ruvbl2	chr7	protein_coding	RuvB-like protein 2
known_NIR_17706	chr7	45108105	45108508	-	45108084	45108508	A3SS	ENSMUST00000094434.13	known	0.00	31	14117	31	14117	y	0.00	28	14967	28	14967	y	0.00	24	12781	24	12781	y	0.00	19	13532	19	13532	y	0.00	29	15868	29	15868	y	0.00	9	7036	9	7036	y	0.00	37	15364	37	15364	y	0.00	8	6030	8	6030	y	0.00	30	13142	30	13142	y	0.00	37	18853	37	18853	y	0.00	32	17197	32	17197	y	0.00	38	18804	38	18804	y	ENSMUSG00000050708.17	Ftl1	chr7	protein_coding	ferritin light polypeptide 1
known_NIR_17707	chr7	45108654	45108748	-	45108654	45108954	A5SS	ENSMUST00000094434.13	known	0.00	0	16452	0	16452	n	0.00	1	17870	1	17870	n	0.00	0	15669	0	15669	n	0.00	0	17486	0	17486	n	0.00	2	18587	2	18587	y	0.00	0	8013	0	8013	n	0.00	4	19040	4	19040	y	0.00	1	7263	1	7263	n	0.00	2	16167	2	16167	y	0.00	4	23757	4	23757	y	0.00	4	20043	4	20043	y	0.00	0	23171	0	23171	n	ENSMUSG00000050708.17	Ftl1	chr7	protein_coding	ferritin light polypeptide 1
known_NIR_17708	chr7	45111390	45112823	-	45111386	45112823	A3SS	ENSMUST00000211365.2	known	0.92	135	11	135	11	y	0.94	140	9	140	9	y	0.93	221	16	221	16	y	0.95	100	5	100	5	y	0.87	133	20	133	20	y	0.95	91	5	91	5	y	0.94	130	9	130	9	y	0.96	82	3	82	3	y	0.95	88	5	88	5	y	0.92	156	13	156	13	y	0.90	131	14	131	14	y	0.93	126	9	126	9	y	ENSMUSG00000003873.12	Bax	chr7	protein_coding	BCL2-associated X protein
known_NIR_17709	chr7	45115695	45125029	-	45115695	45116166	5pMXE	ENSMUST00000211365.2	known	0.06	4	61	4	61	y	0.02	2	85	2	85	y	0.01	1	108	1	108	n	0.03	2	66	2	66	y	0.00	0	100	0	100	n	0.00	0	72	0	72	n	0.00	0	75	0	75	n	0.04	2	44	2	44	y	0.02	1	57	1	57	n	0.01	1	73	1	73	n	0.00	0	66	0	66	n	0.04	2	54	2	54	y	ENSMUSG00000003873.12	Bax	chr7	protein_coding	BCL2-associated X protein
known_NIR_17710	chr7	45124799	45125029	-	45115695	45125029	A3SS	ENSMUST00000210701.2	known	0.98	162	4	162	4	y	0.98	117	2	117	2	y	0.98	44	1	44	1	n	0.99	202	2	202	2	y	1.00	227	0	227	0	n	1.00	58	0	58	0	n	1.00	190	0	190	0	n	0.98	92	2	92	2	y	0.99	151	1	151	1	n	1.00	266	1	266	1	n	1.00	150	0	150	0	n	0.99	230	2	230	2	y	ENSMUSG00000109926.2	Gm45808	chr7	protein_coding	predicted gene 45808
known_NIR_17711	chr7	45143625	45144042	-	45143637	45144042	A3SS	ENSMUST00000211765.2	known	0.00	0	347	0	347	n	0.03	11	356	11	356	y	0.04	16	367	16	367	y	0.02	9	380	9	380	y	0.01	8	569	8	569	y	0.00	0	265	0	265	n	0.00	0	524	0	524	n	0.02	7	279	7	279	y	0.01	5	345	5	345	y	0.02	11	562	11	562	y	0.00	0	378	0	378	n	0.02	9	421	9	421	y	ENSMUSG00000030824.18	Nucb1	chr7	protein_coding	nucleobindin 1
known_NIR_17712	chr7	45151139	45159130	-	45151139	45152602	5pMXE	ENSMUST00000210394.2	known	0.00	1	390	1	390	n	0.01	4	290	4	290	y	0.01	4	366	4	366	y	0.00	1	410	1	410	n	0.01	4	593	4	593	y	0.00	0	258	0	258	n	0.00	2	477	2	477	y	0.01	4	287	4	287	y	0.00	0	287	0	287	n	0.01	3	512	3	512	y	0.00	1	373	1	373	n	0.01	3	432	3	432	y	ENSMUSG00000030824.18	Nucb1	chr7	protein_coding	nucleobindin 1
known_NIR_17713	chr7	45151139	45159130	-	45151139;45152709	45152602;45159130	ES	ENSMUST00000211765.2	known	0.00	1	366.0	1	390;342	n	0.01	4	283.0	4	290;276	y	0.01	4	392.0	4	366;418	y	0.00	1	403.0	1	410;396	n	0.01	4	587.0	4	593;581	y	0.00	0	249.5	0	258;241	n	0.00	2	452.5	2	477;428	y	0.01	4	296.0	4	287;305	y	0.00	0	303.5	0	287;320	n	0.01	3	498.0	3	512;484	y	0.00	1	361.5	1	373;350	n	0.01	3	413.0	3	432;394	y	ENSMUSG00000030824.18	Nucb1	chr7	protein_coding	nucleobindin 1
known_NIR_17714	chr7	45151139	45159130	-	45152709	45159130	3pMXE	ENSMUST00000209509.2	known	0.00	1	342	1	342	n	0.01	4	276	4	276	y	0.01	4	418	4	418	y	0.00	1	396	1	396	n	0.01	4	581	4	581	y	0.00	0	241	0	241	n	0.00	2	428	2	428	y	0.01	4	305	4	305	y	0.00	0	320	0	320	n	0.01	3	484	3	484	y	0.00	1	350	1	350	n	0.01	3	394	3	394	y	ENSMUSG00000030824.18	Nucb1	chr7	protein_coding	nucleobindin 1
known_NIR_17715	chr7	4515282	4516810	-	4515282;4516612	4516580;4516810	ES	ENSMUST00000071798.13	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.03	2	62.5	2	43;82	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000064179.14	Tnnt1	chr7	protein_coding	troponin T1, skeletal, slow
known_NIR_17716	chr7	4515282	4516810	-	4516612	4516810	A3SS&ES	ENSMUST00000108587.9	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.02	2	82	2	82	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000064179.14	Tnnt1	chr7	protein_coding	troponin T1, skeletal, slow
known_NIR_17717	chr7	4515285	4516580	-	4515282	4516580	A3SS	ENSMUST00000071798.13	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.56	54	43	54	43	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000064179.14	Tnnt1	chr7	protein_coding	troponin T1, skeletal, slow
known_NIR_17718	chr7	4515285	4516810	-	4515285;4516612	4516580;4516810	ES	ENSMUST00000108587.9	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.03	2	68.0	2	54;82	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1.0	0	2;0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000064179.14	Tnnt1	chr7	protein_coding	troponin T1, skeletal, slow
known_NIR_17719	chr7	4515285	4516810	-	4516612	4516810	A3SS&ES	ENSMUST00000071798.13	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.02	2	82	2	82	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000064179.14	Tnnt1	chr7	protein_coding	troponin T1, skeletal, slow
known_NIR_17720	chr7	45159271	45159656	-	45159271	45159747	A5SS	ENSMUST00000211765.2	known	0.04	3	71	3	71	y	0.00	0	70	0	70	n	0.05	6	127	6	127	y	0.04	5	108	5	108	y	0.01	1	179	1	179	n	0.00	0	67	0	67	n	0.02	2	123	2	123	y	0.00	0	85	0	85	n	0.02	2	95	2	95	y	0.04	7	152	7	152	y	0.03	3	99	3	99	y	0.02	3	135	3	135	y	ENSMUSG00000030824.18	Nucb1	chr7	protein_coding	nucleobindin 1
known_NIR_17721	chr7	45217803	45223837	-	45220616	45223837	3pMXE	ENSMUST00000210866.2	known	0.04	31	723	31	723	y	0.04	30	688	30	688	y	0.01	4	334	4	334	y	0.04	26	680	26	680	y	0.04	44	1079	44	1079	y	0.04	13	316	13	316	y	0.06	51	828	51	828	y	0.04	17	436	17	436	y	0.05	31	613	31	613	y	0.02	23	998	23	998	y	0.04	30	694	30	694	y	0.04	42	921	42	921	y	ENSMUSG00000109644.2	0610005C13Rik	chr7	lncRNA	RIKEN cDNA 0610005C13 gene
known_NIR_17722	chr7	45217803;45220609	45220410;45223837	-	45217803	45223837	cassetteExon	ENSMUST00000210383.2	known	0.93	412.5	31	793;32	31	y	0.93	426.0	30	813;39	30	y	0.98	181.0	4	345;17	4	y	0.94	413.5	26	776;51	26	y	0.93	590.0	44	1130;50	44	y	0.94	207.5	13	399;16	13	y	0.91	509.5	51	973;46	51	y	0.94	256.0	17	482;30	17	y	0.92	355.0	31	679;31	31	y	0.96	559.5	23	1061;58	23	y	0.94	436.5	30	836;37	30	y	0.93	539.0	42	1033;45	42	y	ENSMUSG00000109644.2	0610005C13Rik	chr7	lncRNA	RIKEN cDNA 0610005C13 gene
known_NIR_17723	chr7	45217803;45220616	45220410;45223837	-	45217803	45223837	cassetteExon	ENSMUST00000210383.2	known	0.96	758.0	31	793;723	31	y	0.96	750.5	30	813;688	30	y	0.99	339.5	4	345;334	4	y	0.97	728.0	26	776;680	26	y	0.96	1104.5	44	1130;1079	44	y	0.96	357.5	13	399;316	13	y	0.95	900.5	51	973;828	51	y	0.96	459.0	17	482;436	17	y	0.95	646.0	31	679;613	31	y	0.98	1029.5	23	1061;998	23	y	0.96	765.0	30	836;694	30	y	0.96	977.0	42	1033;921	42	y	ENSMUSG00000109644.2	0610005C13Rik	chr7	lncRNA	RIKEN cDNA 0610005C13 gene
known_NIR_17724	chr7	45219706	45220410	-	45217803	45220410	A3SS	ENSMUST00000210569.2	known	0.01	10	793	10	793	y	0.01	6	813	6	813	y	0.01	5	345	5	345	y	0.01	9	776	9	776	y	0.01	17	1130	17	1130	y	0.01	5	399	5	399	y	0.02	16	973	16	973	y	0.01	7	482	7	482	y	0.01	5	679	5	679	y	0.01	13	1061	13	1061	y	0.01	10	836	10	836	y	0.00	5	1033	5	1033	y	ENSMUSG00000109644.2	0610005C13Rik	chr7	lncRNA	RIKEN cDNA 0610005C13 gene
known_NIR_17725	chr7	45219706	45220410	-	45219979	45220410	A3SS	ENSMUST00000211521.2	known	0.38	10	16	10	16	y	0.55	6	5	6	5	y	0.33	5	10	5	10	y	0.32	9	19	9	19	y	0.41	17	24	17	24	y	0.36	5	9	5	9	y	0.42	16	22	16	22	y	0.32	7	15	7	15	y	0.36	5	9	5	9	y	0.39	13	20	13	20	y	0.40	10	15	10	15	y	0.31	5	11	5	11	y	ENSMUSG00000109644.2	0610005C13Rik	chr7	lncRNA	RIKEN cDNA 0610005C13 gene
known_NIR_17726	chr7	45219979	45220410	-	45217803	45220410	A3SS	ENSMUST00000210569.2	known	0.02	16	793	16	793	y	0.01	5	813	5	813	y	0.03	10	345	10	345	y	0.02	19	776	19	776	y	0.02	24	1130	24	1130	y	0.02	9	399	9	399	y	0.02	22	973	22	973	y	0.03	15	482	15	482	y	0.01	9	679	9	679	y	0.02	20	1061	20	1061	y	0.02	15	836	15	836	y	0.01	11	1033	11	1033	y	ENSMUSG00000109644.2	0610005C13Rik	chr7	lncRNA	RIKEN cDNA 0610005C13 gene
known_NIR_17727	chr7	45220609	45223837	-	45220616	45223837	A3SS	ENSMUST00000210569.2	known	0.04	32	723	32	723	y	0.05	39	688	39	688	y	0.05	17	334	17	334	y	0.07	51	680	51	680	y	0.04	50	1079	50	1079	y	0.05	16	316	16	316	y	0.05	46	828	46	828	y	0.06	30	436	30	436	y	0.05	31	613	31	613	y	0.05	58	998	58	998	y	0.05	37	694	37	694	y	0.05	45	921	45	921	y	ENSMUSG00000109644.2	0610005C13Rik	chr7	lncRNA	RIKEN cDNA 0610005C13 gene
known_NIR_17728	chr7	45220976	45224855	+	45219823	45224855	A5SS	ENSMUST00000033098.16	known	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.15	3	17	3	17	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	ENSMUSG00000030826.20	Bcat2	chr7	protein_coding	branched chain aminotransferase 2, mitochondrial
known_NIR_17729	chr7	45223946	45224551	-	45223946;45224201	45224032;45224551	ES	ENSMUST00000210383.2	known	0.00	0	613.5	0	833;394	n	0.01	7	551.0	7	705;397	y	0.00	0	274.5	0	370;179	n	0.01	4	674.0	4	840;508	y	0.01	6	920.5	6	1218;623	y	0.00	1	281.0	1	338;224	n	0.01	5	779.0	5	1030;528	y	0.01	3	398.0	3	515;281	y	0.00	2	579.0	2	762;396	y	0.00	2	842.5	2	1107;578	y	0.00	3	611.5	3	824;399	y	0.00	3	850.0	3	1138;562	y	ENSMUSG00000109644.2	0610005C13Rik	chr7	lncRNA	RIKEN cDNA 0610005C13 gene
known_NIR_17730	chr7	45223946	45224551	-	45223946;45224231	45224032;45224551	ES	ENSMUST00000211209.2	known	0.00	0	438.5	0	833;44	n	0.02	7	370.5	7	705;36	y	0.00	0	201.0	0	370;32	n	0.01	4	440.0	4	840;40	y	0.01	6	643.0	6	1218;68	y	0.01	1	182.0	1	338;26	n	0.01	5	536.0	5	1030;42	y	0.01	3	272.0	3	515;29	y	0.00	2	398.5	2	762;35	y	0.00	2	580.0	2	1107;53	y	0.01	3	434.0	3	824;44	y	0.01	3	593.5	3	1138;49	y	ENSMUSG00000109644.2	0610005C13Rik	chr7	lncRNA	RIKEN cDNA 0610005C13 gene
known_NIR_17731	chr7	45223946;45224106	45224032;45224551	-	45223946	45224551	cassetteExon	ENSMUST00000209910.2	known	1.00	431.5	0	833;30	0	n	0.98	363.0	7	705;21	7	y	1.00	188.0	0	370;6	0	n	0.99	437.0	4	840;34	4	y	0.99	625.0	6	1218;32	6	y	0.99	178.5	1	338;19	1	n	0.99	526.5	5	1030;23	5	y	0.99	267.0	3	515;19	3	y	0.99	389.0	2	762;16	2	y	1.00	566.5	2	1107;26	2	y	0.99	419.5	3	824;15	3	y	0.99	585.0	3	1138;32	3	y	ENSMUSG00000109644.2	0610005C13Rik	chr7	lncRNA	RIKEN cDNA 0610005C13 gene
known_NIR_17732	chr7	45224106	45224551	-	45224201	45224551	A3SS	ENSMUST00000210383.2	known	0.07	30	394	30	394	y	0.05	21	397	21	397	y	0.03	6	179	6	179	y	0.06	34	508	34	508	y	0.05	32	623	32	623	y	0.08	19	224	19	224	y	0.04	23	528	23	528	y	0.06	19	281	19	281	y	0.04	16	396	16	396	y	0.04	26	578	26	578	y	0.04	15	399	15	399	y	0.05	32	562	32	562	y	ENSMUSG00000109644.2	0610005C13Rik	chr7	lncRNA	RIKEN cDNA 0610005C13 gene
known_NIR_17733	chr7	45224106	45224551	-	45224231	45224551	A3SS	ENSMUST00000211209.2	known	0.41	30	44	30	44	y	0.37	21	36	21	36	y	0.16	6	32	6	32	y	0.46	34	40	34	40	y	0.32	32	68	32	68	y	0.42	19	26	19	26	y	0.35	23	42	23	42	y	0.40	19	29	19	29	y	0.31	16	35	16	35	y	0.33	26	53	26	53	y	0.25	15	44	15	44	y	0.40	32	49	32	49	y	ENSMUSG00000109644.2	0610005C13Rik	chr7	lncRNA	RIKEN cDNA 0610005C13 gene
known_NIR_17734	chr7	45224231	45224551	-	45224201	45224551	A3SS	ENSMUST00000210383.2	known	0.10	44	394	44	394	y	0.08	36	397	36	397	y	0.15	32	179	32	179	y	0.07	40	508	40	508	y	0.10	68	623	68	623	y	0.10	26	224	26	224	y	0.07	42	528	42	528	y	0.09	29	281	29	281	y	0.08	35	396	35	396	y	0.08	53	578	53	578	y	0.10	44	399	44	399	y	0.08	49	562	49	562	y	ENSMUSG00000109644.2	0610005C13Rik	chr7	lncRNA	RIKEN cDNA 0610005C13 gene
known_NIR_17735	chr7	45234451	45234550	+	45234451	45234535	A3SS	ENSMUST00000033098.16	known	0.00	0	45	0	45	n	0.00	0	51	0	51	n	0.00	0	39	0	39	n	0.04	2	47	2	47	y	0.00	0	90	0	90	n	0.00	0	33	0	33	n	0.00	0	84	0	84	n	0.00	0	57	0	57	n	0.00	0	43	0	43	n	0.00	0	73	0	73	n	0.00	0	68	0	68	n	0.00	0	55	0	55	n	ENSMUSG00000030826.20	Bcat2	chr7	protein_coding	branched chain aminotransferase 2, mitochondrial
known_NIR_17736	chr7	45355186	45357684	+	45355186;45356440	45356030;45357684	ES	ENSMUST00000080885.12	known	0.21	35	128.5	35	134;123	y	0.19	32	136.5	32	135;138	y	0.00	0	14.5	0	8;21	n	0.14	32	203.5	32	183;224	y	0.13	8	54.5	8	56;53	y	0.00	0	3.5	0	5;2	n	0.19	28	118.5	28	137;100	y	0.00	0	7.0	0	8;6	n	0.16	28	142.5	28	145;140	y	0.15	53	307.0	53	296;318	y	0.17	45	214.5	45	202;227	y	0.15	43	242.0	43	219;265	y	ENSMUSG00000059824.13	Dbp	chr7	protein_coding	D site albumin promoter binding protein
known_NIR_17737	chr7	45355186;45356140	45356030;45357684	+	45355186	45357684	cassetteExon	ENSMUST00000211513.2	known	0.67	69.5	35	134;5	35	y	0.68	67.5	32	135;0	32	n	1.00	4.0	0	8;0	0	n	0.75	96.0	32	183;9	32	y	0.78	28.0	8	56;0	8	n	1.00	2.5	0	5;0	0	n	0.71	68.5	28	137;0	28	n	1.00	4.0	0	8;0	0	n	0.72	72.5	28	145;0	28	n	0.74	148.0	53	296;0	53	n	0.70	105.5	45	202;9	45	y	0.72	109.5	43	219;0	43	n	ENSMUSG00000059824.13	Dbp	chr7	protein_coding	D site albumin promoter binding protein
known_NIR_17738	chr7	45356140	45357684	+	45356440	45357684	A5SS	ENSMUST00000080885.12	known	0.04	5	123	5	123	y	0.00	0	138	0	138	n	0.00	0	21	0	21	n	0.04	9	224	9	224	y	0.00	0	53	0	53	n	0.00	0	2	0	2	n	0.00	0	100	0	100	n	0.00	0	6	0	6	n	0.00	0	140	0	140	n	0.00	0	318	0	318	n	0.04	9	227	9	227	y	0.00	0	265	0	265	n	ENSMUSG00000059824.13	Dbp	chr7	protein_coding	D site albumin promoter binding protein
known_NIR_17739	chr7	45363152	45364021	-	45363152	45366417	A5SS	ENSMUST00000107737.11	known	0.73	41	15	41	15	y	0.79	27	7	27	7	y	0.55	24	20	24	20	y	0.62	37	23	37	23	y	0.60	64	42	64	42	y	0.58	21	15	21	15	y	0.64	45	25	45	25	y	0.48	22	24	22	24	y	0.64	39	22	39	22	y	0.72	51	20	51	20	y	0.55	29	24	29	24	y	0.79	63	17	63	17	y	ENSMUSG00000057342.16	Sphk2	chr7	protein_coding	sphingosine kinase 2
known_NIR_17740	chr7	45363152	45364021	-	45363152	45367125	A5SS	ENSMUST00000210060.2	known	0.95	41	2	41	2	y	0.93	27	2	27	2	y	1.00	24	0	24	0	n	0.93	37	3	37	3	y	0.93	64	5	64	5	y	0.84	21	4	21	4	y	0.85	45	8	45	8	y	0.92	22	2	22	2	y	0.95	39	2	39	2	y	0.96	51	2	51	2	y	0.91	29	3	29	3	y	0.95	63	3	63	3	y	ENSMUSG00000057342.16	Sphk2	chr7	protein_coding	sphingosine kinase 2
known_NIR_17741	chr7	45363152	45367125	-	45363152;45366487	45366417;45367125	ES	ENSMUST00000107737.11	known	0.10	2	19.0	2	15;23	y	0.16	2	10.5	2	7;14	y	0.00	0	24.5	0	20;29	n	0.12	3	22.0	3	23;21	y	0.11	5	42.5	5	42;43	y	0.27	4	11.0	4	15;7	y	0.25	8	24.0	8	25;23	y	0.10	2	18.0	2	24;12	y	0.09	2	20.0	2	22;18	y	0.08	2	22.0	2	20;24	y	0.15	3	17.0	3	24;10	y	0.19	3	13.0	3	17;9	y	ENSMUSG00000057342.16	Sphk2	chr7	protein_coding	sphingosine kinase 2
known_NIR_17742	chr7	45368004	45368677	+	45367563	45368677	A5SS	ENSMUST00000210640.2	known	0.02	15	657	15	657	y	0.02	13	632	13	632	y	0.01	7	849	7	849	y	0.01	6	596	6	596	y	0.02	17	815	17	815	y	0.02	8	485	8	485	y	0.02	21	867	21	867	y	0.01	5	439	5	439	y	0.02	10	593	10	593	y	0.01	8	853	8	853	y	0.01	11	735	11	735	y	0.02	11	695	11	695	y	ENSMUSG00000059070.17	Rpl18	chr7	protein_coding	ribosomal protein L18
known_NIR_17743	chr7	45369442	45369862	+	45369442	45369718	A3SS	ENSMUST00000210640.2	known	0.00	2	1296	2	1296	y	0.00	0	1551	0	1551	n	0.00	0	1790	0	1790	n	0.00	0	1206	0	1206	n	0.00	0	1556	0	1556	n	0.00	0	947	0	947	n	0.00	0	1779	0	1779	n	0.00	0	823	0	823	n	0.00	0	1119	0	1119	n	0.00	0	1727	0	1727	n	0.00	0	1569	0	1569	n	0.00	3	1568	3	1568	y	ENSMUSG00000059070.17	Rpl18	chr7	protein_coding	ribosomal protein L18
known_NIR_17744	chr7	45369442	45370138	+	45369442	45369718	3pMXE	ENSMUST00000211435.2	known	0.00	2	1296	2	1296	y	0.00	1	1551	1	1551	n	0.00	0	1790	0	1790	n	0.00	1	1206	1	1206	n	0.00	0	1556	0	1556	n	0.00	1	947	1	947	n	0.00	0	1779	0	1779	n	0.00	0	823	0	823	n	0.00	0	1119	0	1119	n	0.00	0	1727	0	1727	n	0.00	0	1569	0	1569	n	0.00	0	1568	0	1568	n	ENSMUSG00000059070.17	Rpl18	chr7	protein_coding	ribosomal protein L18
known_NIR_17745	chr7	45369442	45370138	+	45369442;45369911	45369718;45370138	ES	ENSMUST00000210640.2	known	0.00	2	1329.5	2	1296;1363	y	0.00	1	1526.0	1	1551;1501	n	0.00	0	1729.5	0	1790;1669	n	0.00	1	1184.0	1	1206;1162	n	0.00	0	1511.0	0	1556;1466	n	0.00	1	932.5	1	947;918	n	0.00	0	1721.0	0	1779;1663	n	0.00	0	797.5	0	823;772	n	0.00	0	1085.0	0	1119;1051	n	0.00	0	1629.5	0	1727;1532	n	0.00	0	1511.0	0	1569;1453	n	0.00	0	1512.5	0	1568;1457	n	ENSMUSG00000059070.17	Rpl18	chr7	protein_coding	ribosomal protein L18
known_NIR_17746	chr7	45369442	45370138	+	45369911	45370138	5pMXE	ENSMUST00000209723.2	known	0.00	2	1363	2	1363	y	0.00	1	1501	1	1501	n	0.00	0	1669	0	1669	n	0.00	1	1162	1	1162	n	0.00	0	1466	0	1466	n	0.00	1	918	1	918	n	0.00	0	1663	0	1663	n	0.00	0	772	0	772	n	0.00	0	1051	0	1051	n	0.00	0	1532	0	1532	n	0.00	0	1453	0	1453	n	0.00	0	1457	0	1457	n	ENSMUSG00000059070.17	Rpl18	chr7	protein_coding	ribosomal protein L18
known_NIR_17747	chr7	45369442;45369911	45369862;45370138	+	45369442	45370138	cassetteExon	ENSMUST00000209867.2	known	1.00	682.5	2	2;1363	2	y	1.00	750.5	1	0;1501	1	n	1.00	834.5	0	0;1669	0	n	1.00	581.0	1	0;1162	1	n	1.00	733.0	0	0;1466	0	n	1.00	459.0	1	0;918	1	n	1.00	831.5	0	0;1663	0	n	1.00	386.0	0	0;772	0	n	1.00	525.5	0	0;1051	0	n	1.00	766.0	0	0;1532	0	n	1.00	726.5	0	0;1453	0	n	1.00	730.0	0	3;1457	0	n	ENSMUSG00000059070.17	Rpl18	chr7	protein_coding	ribosomal protein L18
known_NIR_17748	chr7	45457873	45459551	-	45458156	45459551	A3SS&ES	ENSMUST00000210853.3	known	0.34	12	23	12	23	y	0.32	13	28	13	28	y	0.31	11	25	11	25	y	0.26	12	34	12	34	y	0.35	22	40	22	40	y	0.23	7	23	7	23	y	0.24	14	45	14	45	y	1.00	11	0	11	0	n	1.00	9	0	9	0	n	0.26	13	37	13	37	y	1.00	17	0	17	0	n	0.31	16	36	16	36	y	ENSMUSG00000003269.18	Cyth2	chr7	protein_coding	cytohesin 2
known_NIR_17749	chr7	45457873;45458156	45458154;45459551	-	45457873	45459551	cassetteExon	ENSMUST00000107729.10	known	0.49	11.5	12	0;23	12	n	0.70	30.0	13	32;28	13	y	0.69	25.0	11	25;25	11	y	0.59	17.0	12	0;34	12	n	0.64	39.0	22	38;40	22	y	0.76	22.5	7	22;23	7	y	0.76	45.5	14	46;45	14	y	0.51	11.5	11	23;0	11	n	0.62	14.5	9	29;0	9	n	0.75	39.5	13	42;37	13	y	0.47	15.0	17	30;0	17	n	0.71	39.0	16	42;36	16	y	ENSMUSG00000003269.18	Cyth2	chr7	protein_coding	cytohesin 2
known_NIR_17750	chr7	45457876	45459551	-	45457873	45459551	A3SS	ENSMUST00000107729.10	known	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.08	1	11	1	11	n	0.00	0	12	0	12	n	0.00	0	22	0	22	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.18	2	9	2	9	y	0.00	0	13	0	13	n	0.00	0	17	0	17	n	0.00	0	16	0	16	n	ENSMUSG00000003269.18	Cyth2	chr7	protein_coding	cytohesin 2
known_NIR_17751	chr7	45479568	45480019	-	45479568;45479833	45479716;45480019	ES	ENSMUST00000131384.3	known	0.00	0	26.5	0	29;24	n	0.04	1	26.5	1	28;25	n	0.07	2	28.0	2	26;30	y	0.00	0	26.0	0	28;24	n	0.00	0	26.5	0	31;22	n	0.00	0	16.0	0	13;19	n	0.00	0	30.5	0	37;24	n	0.06	1	17.0	1	14;20	n	0.06	1	17.0	1	13;21	n	0.00	0	26.5	0	29;24	n	0.00	0	35.0	0	34;36	n	0.04	1	25.5	1	26;25	n	ENSMUSG00000053801.19	Grwd1	chr7	protein_coding	glutamate-rich WD repeat containing 1
known_NIR_17752	chr7	45479568	45480019	-	45479833	45480019	A3SS&ES	ENSMUST00000211265.2	known	0.00	0	24	0	24	n	0.04	1	25	1	25	n	0.06	2	30	2	30	y	0.00	0	24	0	24	n	0.00	0	22	0	22	n	0.00	0	19	0	19	n	0.00	0	24	0	24	n	0.05	1	20	1	20	n	0.05	1	21	1	21	n	0.00	0	24	0	24	n	0.00	0	36	0	36	n	0.04	1	25	1	25	n	ENSMUSG00000053801.19	Grwd1	chr7	protein_coding	glutamate-rich WD repeat containing 1
known_NIR_17753	chr7	45522598	45523183	+	45522525	45523183	A5SS	ENSMUST00000002855.14	known	0.03	6	226	6	226	y	0.05	11	207	11	207	y	0.07	27	373	27	373	y	0.06	17	258	17	258	y	0.06	22	337	22	337	y	0.04	9	231	9	231	y	0.04	14	309	14	309	y	0.08	20	217	20	217	y	0.06	11	182	11	182	y	0.06	21	324	21	324	y	0.07	19	254	19	254	y	0.06	21	306	21	306	y	ENSMUSG00000002778.15	Kdelr1	chr7	protein_coding	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1
known_NIR_17754	chr7	45530983	45532401	+	45531176	45532401	A5SS	ENSMUST00000002855.14	known	0.03	11	378	11	378	y	0.03	11	426	11	426	y	0.01	5	550	5	550	y	0.03	10	343	10	343	y	0.03	15	493	15	493	y	0.02	6	317	6	317	y	0.03	14	484	14	484	y	0.02	5	270	5	270	y	0.02	5	309	5	309	y	0.02	11	446	11	446	y	0.02	9	377	9	377	y	0.04	16	399	16	399	y	ENSMUSG00000002778.15	Kdelr1	chr7	protein_coding	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1
known_NIR_17755	chr7	45547090	45556342	+	45547090	45549056	3pMXE	ENSMUST00000210044.2	known	0.17	7	33	7	33	y	0.26	10	29	10	29	y	0.28	18	46	18	46	y	0.18	9	40	9	40	y	0.17	9	44	9	44	y	0.31	8	18	8	18	y	0.07	3	41	3	41	y	0.17	7	34	7	34	y	0.10	4	35	4	35	y	0.10	5	44	5	44	y	0.12	5	36	5	36	y	0.18	11	49	11	49	y	ENSMUSG00000002781.20	Tmem143	chr7	protein_coding	transmembrane protein 143
known_NIR_17756	chr7	45547090	45556342	+	45547090;45549160	45549056;45556342	ES	ENSMUST00000069772.16	known	0.17	7	33.0	7	33;33	y	0.27	10	27.5	10	29;26	y	0.33	18	36.5	18	46;27	y	0.19	9	39.0	9	40;38	y	0.16	9	49.0	9	44;54	y	0.25	8	24.5	8	18;31	y	0.07	3	40.5	3	41;40	y	0.19	7	30.0	7	34;26	y	0.11	4	31.5	4	35;28	y	0.10	5	47.0	5	44;50	y	0.14	5	30.5	5	36;25	y	0.20	11	43.5	11	49;38	y	ENSMUSG00000002781.20	Tmem143	chr7	protein_coding	transmembrane protein 143
known_NIR_17757	chr7	45547090	45556342	+	45549160	45556342	A5SS&ES	ENSMUST00000209580.2	known	0.17	7	33	7	33	y	0.28	10	26	10	26	y	0.40	18	27	18	27	y	0.19	9	38	9	38	y	0.14	9	54	9	54	y	0.21	8	31	8	31	y	0.07	3	40	3	40	y	0.21	7	26	7	26	y	0.12	4	28	4	28	y	0.09	5	50	5	50	y	0.17	5	25	5	25	y	0.22	11	38	11	38	y	ENSMUSG00000002781.20	Tmem143	chr7	protein_coding	transmembrane protein 143
known_NIR_17758	chr7	45547173	45549056	+	45547090	45549056	A5SS	ENSMUST00000069772.16	known	0.06	2	33	2	33	y	0.00	0	29	0	29	n	0.04	2	46	2	46	y	0.07	3	40	3	40	y	0.04	2	44	2	44	y	0.00	0	18	0	18	n	0.07	3	41	3	41	y	0.08	3	34	3	34	y	0.03	1	35	1	35	n	0.04	2	44	2	44	y	0.03	1	36	1	36	n	0.04	2	49	2	49	y	ENSMUSG00000002781.20	Tmem143	chr7	protein_coding	transmembrane protein 143
known_NIR_17759	chr7	45549160	45556371	+	45549160	45556342	A3SS	ENSMUST00000069772.16	known	0.00	0	33	0	33	n	0.00	0	26	0	26	n	0.00	0	27	0	27	n	0.00	0	38	0	38	n	0.00	0	54	0	54	n	0.00	0	31	0	31	n	0.11	5	40	5	40	y	0.00	0	26	0	26	n	0.00	0	28	0	28	n	0.00	0	50	0	50	n	0.00	0	25	0	25	n	0.00	0	38	0	38	n	ENSMUSG00000002781.20	Tmem143	chr7	protein_coding	transmembrane protein 143
known_NIR_17760	chr7	45556536	45558746	+	45556536	45557531	3pMXE	ENSMUST00000210692.2	known	0.00	0	35	0	35	n	0.03	1	34	1	34	n	0.07	3	41	3	41	y	0.03	2	62	2	62	y	0.00	0	46	0	46	n	0.00	0	19	0	19	n	0.05	2	41	2	41	y	0.02	1	46	1	46	n	0.00	0	31	0	31	n	0.00	0	35	0	35	n	0.07	3	39	3	39	y	0.06	3	45	3	45	y	ENSMUSG00000002781.20	Tmem143	chr7	protein_coding	transmembrane protein 143
known_NIR_17761	chr7	45556536	45558746	+	45556536;45557661	45557531;45558746	ES	ENSMUST00000069772.16	known	0.00	0	34.0	0	35;33	n	0.03	1	34.0	1	34;34	n	0.07	3	41.0	3	41;41	y	0.04	2	55.0	2	62;48	y	0.00	0	44.5	0	46;43	n	0.00	0	26.0	0	19;33	n	0.04	2	47.0	2	41;53	y	0.02	1	42.5	1	46;39	n	0.00	0	31.5	0	31;32	n	0.00	0	45.5	0	35;56	n	0.08	3	35.5	3	39;32	y	0.06	3	45.0	3	45;45	y	ENSMUSG00000002781.20	Tmem143	chr7	protein_coding	transmembrane protein 143
known_NIR_17762	chr7	45646246;45646398	45646337;45648074	-	45646246	45648074	cassetteExon	ENSMUST00000002850.8	known	0.04	6.5	163	6;7	163	y	0.04	4.0	110	3;5	110	y	0.02	1.0	41	1;1	41	n	0.02	5.0	196	4;6	196	y	0.08	16.0	184	16;16	184	y	0.01	0.5	38	0;1	38	n	0.03	5.5	162	5;6	162	y	0.07	6.5	91	4;9	91	y	0.07	12.0	169	8;16	169	y	0.08	17.5	212	17;18	212	y	0.05	7.5	159	6;9	159	y	0.03	7.0	249	8;6	249	y	ENSMUSG00000030834.8	Abcc6	chr7	protein_coding	ATP-binding cassette, sub-family C (CFTR/MRP), member 6
known_NIR_17763	chr7	4632801	4633211	-	4632801	4633221	A5SS	ENSMUST00000055085.8	known	0.00	1	284	1	284	n	0.02	3	188	3	188	y	0.00	1	230	1	230	n	0.01	2	351	2	351	y	0.01	4	384	4	384	y	0.01	2	145	2	145	y	0.01	3	334	3	334	y	0.03	4	154	4	154	y	0.01	2	248	2	248	y	0.02	8	319	8	319	y	0.01	4	310	4	310	y	0.01	2	328	2	328	y	ENSMUSG00000045282.8	Tmem86b	chr7	protein_coding	transmembrane protein 86B
known_NIR_17764	chr7	4632801	4633211	-	4632801	4634122	A5SS	ENSMUST00000205402.2	known	1.00	1	0	1	0	n	0.75	3	1	3	1	n	0.33	1	2	1	2	n	0.67	2	1	2	1	n	0.57	4	3	4	3	n	0.67	2	1	2	1	n	0.60	3	2	3	2	n	0.57	4	3	4	3	n	0.50	2	2	2	2	n	0.80	8	2	8	2	y	0.40	4	6	4	6	y	0.40	2	3	2	3	n	ENSMUSG00000045282.8	Tmem86b	chr7	protein_coding	transmembrane protein 86B
known_NIR_17765	chr7	4632801	4634122	-	4632801	4633221	5pMXE	ENSMUST00000055085.8	known	0.00	0	284	0	284	n	0.01	1	188	1	188	n	0.01	2	230	2	230	y	0.00	1	351	1	351	n	0.01	3	384	3	384	y	0.01	1	145	1	145	n	0.01	2	334	2	334	y	0.02	3	154	3	154	y	0.01	2	248	2	248	y	0.01	2	319	2	319	y	0.02	6	310	6	310	y	0.01	3	328	3	328	y	ENSMUSG00000045282.8	Tmem86b	chr7	protein_coding	transmembrane protein 86B
known_NIR_17766	chr7	46348971	46349060	-	46348976	46349060	A3SS	ENSMUST00000143082.4	known	0.00	0	30	0	30	n	0.03	1	29	1	29	n	0.00	0	28	0	28	n	0.00	0	28	0	28	n	0.04	1	26	1	26	n	0.00	0	14	0	14	n	0.03	1	30	1	30	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	31	0	31	n	0.07	2	25	2	25	y	0.07	2	26	2	26	y	ENSMUSG00000006763.15	Saal1	chr7	protein_coding	serum amyloid A-like 1
known_NIR_17767	chr7	46351916	46352045	-	46351941	46352045	A3SS	ENSMUST00000143082.4	known	0.00	0	28	0	28	n	0.00	0	13	0	13	n	0.14	2	12	2	12	y	0.09	2	20	2	20	y	0.05	1	21	1	21	n	0.00	0	5	0	5	n	0.15	4	23	4	23	y	0.00	0	10	0	10	n	0.00	0	17	0	17	n	0.08	2	24	2	24	y	0.00	0	15	0	15	n	0.05	1	20	1	20	n	ENSMUSG00000006763.15	Saal1	chr7	protein_coding	serum amyloid A-like 1
known_NIR_17768	chr7	46362151	46363085	-	46362151	46364434	A5SS	ENSMUST00000006956.9	known	0.00	0	25398	0	25398	n	0.00	0	14078	0	14078	n	0.00	10	106661	10	106661	y	0.00	0	12805	0	12805	n	0.00	0	75243	0	75243	n	0.00	6	68094	6	68094	y	0.00	5	71417	5	71417	y	0.00	5	79726	5	79726	y	0.00	0	204	0	204	n	0.00	0	225	0	225	n	0.00	0	159	0	159	n	0.00	0	199	0	199	n	ENSMUSG00000040026.9	Saa3	chr7	protein_coding	serum amyloid A 3
known_NIR_17769	chr7	46401288	46401714	+	46401288	46401711	A3SS	ENSMUST00000210769.2	known	0.36	7163	12642	7163	12642	y	0.35	11238	20609	11238	20609	y	0.37	34048	59116	34048	59116	y	0.36	7321	13027	7321	13027	y	0.36	19002	34184	19002	34184	y	0.36	22935	40274	22935	40274	y	0.36	18165	31878	18165	31878	y	0.36	21865	38355	21865	38355	y	0.36	4986	8802	4986	8802	y	0.36	8192	14466	8192	14466	y	0.37	6583	11223	6583	11223	y	0.38	7740	12845	7740	12845	y	ENSMUSG00000057465.6	Saa2	chr7	protein_coding	serum amyloid A 2
known_NIR_17770	chr7	46401288	46402842	+	46401288;46401805	46401711;46402842	ES	ENSMUST00000210769.2	known	0.00	112	33326.0	112	12642;54010	y	0.00	165	51675.0	165	20609;82741	y	0.01	1649	146591.5	1649	59116;234067	y	0.00	80	31687.5	80	13027;50348	y	0.00	260	82849.5	260	34184;131515	y	0.01	542	99245.0	542	40274;158216	y	0.00	345	77060.5	345	31878;122243	y	0.00	360	94069.5	360	38355;149784	y	0.00	40	21132.5	40	8802;33463	y	0.00	86	34221.0	86	14466;53976	y	0.00	58	27377.5	58	11223;43532	y	0.00	43	32039.5	43	12845;51234	y	ENSMUSG00000057465.6	Saa2	chr7	protein_coding	serum amyloid A 2
known_NIR_17771	chr7	46401288;46401805	46401714;46402842	+	46401288	46402842	cassetteExon	ENSMUST00000210272.2	known	1.00	30586.5	112	7163;54010	112	y	1.00	46989.5	165	11238;82741	165	y	0.99	134057.5	1649	34048;234067	1649	y	1.00	28834.5	80	7321;50348	80	y	1.00	75258.5	260	19002;131515	260	y	0.99	90575.5	542	22935;158216	542	y	1.00	70204.0	345	18165;122243	345	y	1.00	85824.5	360	21865;149784	360	y	1.00	19224.5	40	4986;33463	40	y	1.00	31084.0	86	8192;53976	86	y	1.00	25057.5	58	6583;43532	58	y	1.00	29487.0	43	7740;51234	43	y	ENSMUSG00000057465.6	Saa2	chr7	protein_coding	serum amyloid A 2
known_NIR_17772	chr7	46412637	46416518	-	46412637;46414349	46414243;46416518	ES	ENSMUST00000142663.8	known	0.00	0	39.5	0	43;36	n	0.00	0	38.5	0	52;25	n	0.00	0	25.0	0	29;21	n	0.00	0	35.5	0	41;30	n	0.00	0	42.0	0	53;31	n	0.00	0	13.5	0	11;16	n	0.05	2	37.5	2	42;33	y	0.00	0	27.0	0	32;22	n	0.00	0	23.0	0	21;25	n	0.00	0	37.0	0	50;24	n	0.00	0	22.0	0	19;25	n	0.00	0	29.0	0	38;20	n	ENSMUSG00000014418.17	Hps5	chr7	protein_coding	HPS5, biogenesis of lysosomal organelles complex 2 subunit 2
known_NIR_17773	chr7	46412637	46416518	-	46414349	46416518	3pMXE	ENSMUST00000130365.2	known	0.00	0	36	0	36	n	0.00	0	25	0	25	n	0.00	0	21	0	21	n	0.00	0	30	0	30	n	0.00	0	31	0	31	n	0.00	0	16	0	16	n	0.06	2	33	2	33	y	0.00	0	22	0	22	n	0.00	0	25	0	25	n	0.00	0	24	0	24	n	0.00	0	25	0	25	n	0.00	0	20	0	20	n	ENSMUSG00000014418.17	Hps5	chr7	protein_coding	HPS5, biogenesis of lysosomal organelles complex 2 subunit 2
known_NIR_17774	chr7	46416563	46417457	-	46416631	46417457	A3SS	ENSMUST00000142663.8	known	0.00	0	34	0	34	n	0.05	2	36	2	36	y	0.00	0	27	0	27	n	0.05	1	18	1	18	n	0.02	1	40	1	40	n	0.00	0	9	0	9	n	0.00	0	37	0	37	n	0.00	0	24	0	24	n	0.03	1	29	1	29	n	0.00	0	33	0	33	n	0.00	0	26	0	26	n	0.00	0	33	0	33	n	ENSMUSG00000014418.17	Hps5	chr7	protein_coding	HPS5, biogenesis of lysosomal organelles complex 2 subunit 2
known_NIR_17775	chr7	46421967	46422582	-	46421967	46422544	A5SS	ENSMUST00000142663.8	known	0.08	3	35	3	35	y	0.25	6	18	6	18	y	0.09	2	20	2	20	y	0.31	8	18	8	18	y	0.11	4	33	4	33	y	0.29	2	5	2	5	n	0.28	7	18	7	18	y	0.10	2	18	2	18	y	0.21	4	15	4	15	y	0.12	5	35	5	35	y	0.19	4	17	4	17	y	0.14	2	12	2	12	y	ENSMUSG00000014418.17	Hps5	chr7	protein_coding	HPS5, biogenesis of lysosomal organelles complex 2 subunit 2
known_NIR_17776	chr7	46424361	46425189	-	46424361;46424708	46424578;46425189	ES	ENSMUST00000142663.8	known	0.96	11	0.5	11	0;1	n	0.89	4	0.5	4	0;1	n	0.89	12	1.5	12	2;1	n	0.53	4	3.5	4	3;4	y	0.81	11	2.5	11	4;1	n	1.00	5	0.0	5	0;0	n	1.00	7	0.0	7	0;0	n	0.96	12	0.5	12	1;0	n	1.00	5	0.0	5	0;0	n	0.98	22	0.5	22	1;0	n	1.00	7	0.0	7	0;0	n	1.00	8	0.0	8	0;0	n	ENSMUSG00000014418.17	Hps5	chr7	protein_coding	HPS5, biogenesis of lysosomal organelles complex 2 subunit 2
known_NIR_17777	chr7	46427524	46428496	-	46427623	46428496	A3SS	ENSMUST00000142663.8	known	0.00	0	7	0	7	n	0.09	1	10	1	10	n	0.06	1	15	1	15	n	0.08	1	12	1	12	n	0.12	3	22	3	22	y	0.40	2	3	2	3	n	0.07	1	14	1	14	n	0.00	0	16	0	16	n	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.29	2	5	2	5	n	0.15	2	11	2	11	y	ENSMUSG00000014418.17	Hps5	chr7	protein_coding	HPS5, biogenesis of lysosomal organelles complex 2 subunit 2
known_NIR_17778	chr7	46433141	46435934	-	46433107	46435934	A3SS	ENSMUST00000142663.8	known	0.07	1	14	1	14	n	0.00	0	7	0	7	n	0.17	2	10	2	10	y	0.09	2	21	2	21	y	0.09	1	10	1	10	n	0.12	1	7	1	7	n	0.00	0	11	0	11	n	0.20	1	4	1	4	n	0.00	0	10	0	10	n	0.04	1	22	1	22	n	0.19	3	13	3	13	y	0.00	0	22	0	22	n	ENSMUSG00000014418.17	Hps5	chr7	protein_coding	HPS5, biogenesis of lysosomal organelles complex 2 subunit 2
known_NIR_17779	chr7	46440472	46444852	-	46440496	46444852	A3SS	ENSMUST00000142663.8	known	0.25	4	12	4	12	y	0.20	2	8	2	8	y	0.14	2	12	2	12	y	0.00	0	12	0	12	n	0.11	2	16	2	16	y	0.15	2	11	2	11	y	0.11	1	8	1	8	n	0.11	1	8	1	8	n	0.00	0	10	0	10	n	0.40	4	6	4	6	y	0.22	2	7	2	7	n	0.24	4	13	4	13	y	ENSMUSG00000014418.17	Hps5	chr7	protein_coding	HPS5, biogenesis of lysosomal organelles complex 2 subunit 2
known_NIR_17780	chr7	46440496	46445331	-	46440496	46444852	5pMXE	ENSMUST00000142663.8	known	0.08	1	12	1	12	n	0.00	0	8	0	8	n	0.08	1	12	1	12	n	0.00	0	12	0	12	n	0.06	1	16	1	16	n	0.15	2	11	2	11	y	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.25	2	6	2	6	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	ENSMUSG00000014418.17	Hps5	chr7	protein_coding	HPS5, biogenesis of lysosomal organelles complex 2 subunit 2
known_NIR_17781	chr7	46445712;46446889	46446821;46451096	+	46445712	46451096	cassetteExon	ENSMUST00000006774.11	known	0.00	0.0	30	0;0	30	n	0.15	4.0	22	5;3	22	y	0.14	7.0	44	3;11	44	y	0.08	2.5	30	3;2	30	y	0.22	9.5	34	5;14	34	y	0.04	1.0	24	1;1	24	n	0.01	0.5	35	1;0	35	n	0.14	2.5	16	3;2	16	y	0.06	1.5	25	1;2	25	n	0.08	4.0	46	4;4	46	y	0.07	1.5	19	3;0	19	n	0.07	2.5	35	5;0	35	n	ENSMUSG00000006599.14	Gtf2h1	chr7	protein_coding	general transcription factor II H, polypeptide 1
known_NIR_17782	chr7	4645036	4645135	-	4645040	4645135	A3SS	ENSMUST00000064099.8	known	0.01	1	147	1	147	n	0.00	0	112	0	112	n	0.01	2	147	2	147	y	0.00	0	168	0	168	n	0.00	0	201	0	201	n	0.00	0	74	0	74	n	0.00	0	181	0	181	n	0.01	1	87	1	87	n	0.00	0	124	0	124	n	0.02	4	234	4	234	y	0.00	0	156	0	156	n	0.01	2	190	2	190	y	ENSMUSG00000052296.8	Ppp6r1	chr7	protein_coding	protein phosphatase 6, regulatory subunit 1
known_NIR_17783	chr7	46495341	46496963	+	46495341	46496813	A3SS&ES	ENSMUST00000125862.8	known	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.30	3	7	3	7	y	0.38	3	5	3	5	n	0.75	3	1	3	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.75	6	2	6	2	n	1.00	6	0	6	0	n	0.67	2	1	2	1	n	0.00	0	1	0	1	n	ENSMUSG00000063229.16	Ldha	chr7	protein_coding	lactate dehydrogenase A
known_NIR_17784	chr7	46495341	46496963	+	46495341	46497020	A3SS	ENSMUST00000048209.16	known	0.00	0	2364	0	2364	n	0.00	0	2528	0	2528	n	0.00	3	5048	3	5048	y	0.00	3	3464	3	3464	y	0.00	3	3256	3	3256	y	0.00	0	2159	0	2159	n	0.00	0	3391	0	3391	n	0.00	0	2531	0	2531	n	0.00	6	1930	6	1930	y	0.00	6	3537	6	3537	y	0.00	2	1800	2	1800	y	0.00	0	2442	0	2442	n	ENSMUSG00000063229.16	Ldha	chr7	protein_coding	lactate dehydrogenase A
known_NIR_17785	chr7	46495341	46497020	+	46495870	46497020	5pMXE	ENSMUST00000133062.2	known	1.00	2364	2	2364	2	y	1.00	2528	2	2528	2	y	1.00	5048	13	5048	13	y	1.00	3464	2	3464	2	y	1.00	3256	4	3256	4	y	1.00	2159	0	2159	0	n	1.00	3391	1	3391	1	n	1.00	2531	2	2531	2	y	1.00	1930	0	1930	0	n	1.00	3537	6	3537	6	y	1.00	1800	1	1800	1	n	1.00	2442	1	2442	1	n	ENSMUSG00000063229.16	Ldha	chr7	protein_coding	lactate dehydrogenase A
known_NIR_17786	chr7	46495341;46495870	46495726;46497020	+	46495341	46497020	cassetteExon	ENSMUST00000048209.16	known	0.00	1.0	2364	0;2	2364	n	0.00	1.0	2528	0;2	2528	n	0.00	7.5	5048	2;13	5048	y	0.00	2.5	3464	3;2	3464	y	0.00	2.0	3256	0;4	3256	n	0.00	0.5	2159	1;0	2159	n	0.00	0.5	3391	0;1	3391	n	0.00	1.0	2531	0;2	2531	n	0.00	0.0	1930	0;0	1930	n	0.00	3.0	3537	0;6	3537	n	0.00	0.5	1800	0;1	1800	n	0.00	0.5	2442	0;1	2442	n	ENSMUSG00000063229.16	Ldha	chr7	protein_coding	lactate dehydrogenase A
known_NIR_17787	chr7	46495341;46495870	46495726;46497020	+	46495341;46496920	46496813;46497020	MXE	ENSMUST00000125862.8	known	0.40	1.0	1.5	0;2	2;1	n	0.25	1.0	3.0	0;2	3;3	n	0.54	7.5	6.5	2;13	7;6	y	0.42	2.5	3.5	3;2	5;2	y	0.67	2.0	1.0	0;4	1;1	n	0.11	0.5	4.0	1;0	4;4	n	1.00	0.5	0.0	0;1	0;0	n	0.67	1.0	0.5	0;2	0;1	n	0.00	0.0	2.5	0;0	2;3	n	0.75	3.0	1.0	0;6	0;2	n	0.50	0.5	0.5	0;1	1;0	n	0.33	0.5	1.0	0;1	1;1	n	ENSMUSG00000063229.16	Ldha	chr7	protein_coding	lactate dehydrogenase A
known_NIR_17788	chr7	46495341;46496920	46496813;46497020	+	46495341	46497020	cassetteExon	ENSMUST00000048209.16	known	0.00	1.5	2364	2;1	2364	n	0.00	3.0	2528	3;3	2528	y	0.00	6.5	5048	7;6	5048	y	0.00	3.5	3464	5;2	3464	y	0.00	1.0	3256	1;1	3256	n	0.00	4.0	2159	4;4	2159	y	0.00	0.0	3391	0;0	3391	n	0.00	0.5	2531	0;1	2531	n	0.00	2.5	1930	2;3	1930	y	0.00	1.0	3537	0;2	3537	n	0.00	0.5	1800	1;0	1800	n	0.00	1.0	2442	1;1	2442	n	ENSMUSG00000063229.16	Ldha	chr7	protein_coding	lactate dehydrogenase A
known_NIR_17789	chr7	46496812	46497020	+	46495341	46497020	A5SS	ENSMUST00000048209.16	known	0.00	0	2364	0	2364	n	0.00	0	2528	0	2528	n	0.00	2	5048	2	5048	y	0.00	3	3464	3	3464	y	0.00	0	3256	0	3256	n	0.00	0	2159	0	2159	n	0.00	0	3391	0	3391	n	0.00	1	2531	1	2531	n	0.00	1	1930	1	1930	n	0.00	1	3537	1	3537	n	0.00	0	1800	0	1800	n	0.00	2	2442	2	2442	y	ENSMUSG00000063229.16	Ldha	chr7	protein_coding	lactate dehydrogenase A
known_NIR_17790	chr7	46496812	46497020	+	46495870	46497020	A5SS	ENSMUST00000092621.12	known	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.13	2	13	2	13	y	0.60	3	2	3	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	1	2	1	2	n	1.00	1	0	1	0	n	0.14	1	6	1	6	n	0.00	0	1	0	1	n	0.67	2	1	2	1	n	ENSMUSG00000063229.16	Ldha	chr7	protein_coding	lactate dehydrogenase A
known_NIR_17791	chr7	46496920	46497020	+	46495870	46497020	A5SS	ENSMUST00000133062.2	known	0.33	1	2	1	2	n	0.60	3	2	3	2	n	0.32	6	13	6	13	y	0.50	2	2	2	2	n	0.20	1	4	1	4	n	1.00	4	0	4	0	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	1.00	3	0	3	0	n	0.25	2	6	2	6	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	ENSMUSG00000063229.16	Ldha	chr7	protein_coding	lactate dehydrogenase A
known_NIR_17792	chr7	46497169	46498448	+	46497169	46498397	A3SS	ENSMUST00000147535.8	known	0.00	4	2405	4	2405	y	0.00	0	2665	0	2665	n	0.00	0	5152	0	5152	n	0.00	4	3252	4	3252	y	0.00	6	3686	6	3686	y	0.00	0	2360	0	2360	n	0.00	0	3399	0	3399	n	0.00	0	2452	0	2452	n	0.00	0	1874	0	1874	n	0.00	0	3522	0	3522	n	0.00	0	2097	0	2097	n	0.00	0	2651	0	2651	n	ENSMUSG00000063229.16	Ldha	chr7	protein_coding	lactate dehydrogenase A
known_NIR_17793	chr7	46498514	46499602	+	46498514	46501301	A3SS	ENSMUST00000210968.2	known	1.00	2285	0	2285	0	n	1.00	2620	0	2620	0	n	1.00	4715	0	4715	0	n	1.00	2878	0	2878	0	n	1.00	3310	0	3310	0	n	1.00	2168	0	2168	0	n	1.00	3286	0	3286	0	n	1.00	2287	0	2287	0	n	1.00	1571	0	1571	0	n	1.00	3216	2	3216	2	y	1.00	1960	2	1960	2	y	1.00	2413	0	2413	0	n	ENSMUSG00000063229.16	Ldha	chr7	protein_coding	lactate dehydrogenase A
known_NIR_17794	chr7	46498514	46499628	+	46498514	46499602	A3SS	ENSMUST00000147535.8	known	0.04	85	2285	85	2285	y	0.00	0	2620	0	2620	n	0.00	0	4715	0	4715	n	0.00	0	2878	0	2878	n	0.00	0	3310	0	3310	n	0.00	0	2168	0	2168	n	0.04	146	3286	146	3286	y	0.03	69	2287	69	2287	y	0.00	0	1571	0	1571	n	0.04	125	3216	125	3216	y	0.00	0	1960	0	1960	n	0.00	0	2413	0	2413	n	ENSMUSG00000063229.16	Ldha	chr7	protein_coding	lactate dehydrogenase A
known_NIR_17795	chr7	46498514	46499628	+	46498514	46501301	A3SS	ENSMUST00000210968.2	known	1.00	85	0	85	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	146	0	146	0	n	1.00	69	0	69	0	n	-	-	-	-	-	-	0.98	125	2	125	2	y	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000063229.16	Ldha	chr7	protein_coding	lactate dehydrogenase A
known_NIR_17796	chr7	46498514;46501418	46501301;46503407	+	46498514;46500482	46499602;46503407	MXE	ENSMUST00000209548.2	known	0.64	2066.5	1142.5	0;4133	2285;0	n	0.68	2833.5	1312.0	0;5667	2620;4	n	0.62	3806.0	2357.5	0;7612	4715;0	n	0.63	2410.0	1439.0	0;4820	2878;0	n	0.63	2858.5	1655.0	0;5717	3310;0	n	0.65	1997.0	1084.0	0;3994	2168;0	n	0.65	3104.5	1643.0	0;6209	3286;0	n	0.62	1848.5	1145.0	0;3697	2287;3	n	0.66	1559.0	785.5	0;3118	1571;0	n	0.66	3147.0	1610.0	2;6292	3216;4	y	0.66	1917.5	980.0	2;3833	1960;0	n	0.64	2133.5	1206.5	0;4267	2413;0	n	ENSMUSG00000063229.16	Ldha	chr7	protein_coding	lactate dehydrogenase A
known_NIR_17797	chr7	4649939	4661678	-	4649939	4661480	A5SS	ENSMUST00000064099.8	known	0.03	2	58	2	58	y	0.00	0	40	0	40	n	0.03	2	69	2	69	y	0.00	0	89	0	89	n	0.01	1	70	1	70	n	0.00	0	38	0	38	n	0.05	2	41	2	41	y	0.06	2	31	2	31	y	0.00	0	43	0	43	n	0.06	4	66	4	66	y	0.02	1	55	1	55	n	0.00	0	79	0	79	n	ENSMUSG00000052296.8	Ppp6r1	chr7	protein_coding	protein phosphatase 6, regulatory subunit 1
known_NIR_17798	chr7	46500482	46501301	+	46498514	46501301	A5SS	ENSMUST00000210968.2	known	1.00	3704	0	3704	0	n	1.00	5052	0	5052	0	n	1.00	7427	0	7427	0	n	1.00	4599	0	4599	0	n	1.00	5238	0	5238	0	n	1.00	3657	0	3657	0	n	1.00	5293	0	5293	0	n	1.00	3475	0	3475	0	n	1.00	2848	0	2848	0	n	1.00	5554	2	5554	2	y	1.00	3387	2	3387	2	y	1.00	3890	0	3890	0	n	ENSMUSG00000063229.16	Ldha	chr7	protein_coding	lactate dehydrogenase A
known_NIR_17799	chr7	46500482	46503407	+	46500482	46501301	3pMXE	ENSMUST00000147535.8	known	0.00	0	3704	0	3704	n	0.00	4	5052	4	5052	y	0.00	0	7427	0	7427	n	0.00	0	4599	0	4599	n	0.00	0	5238	0	5238	n	0.00	0	3657	0	3657	n	0.00	0	5293	0	5293	n	0.00	3	3475	3	3475	y	0.00	0	2848	0	2848	n	0.00	4	5554	4	5554	y	0.00	0	3387	0	3387	n	0.00	0	3890	0	3890	n	ENSMUSG00000063229.16	Ldha	chr7	protein_coding	lactate dehydrogenase A
known_NIR_17800	chr7	46500482	46503407	+	46500482;46501418	46501301;46503407	ES	ENSMUST00000048209.16	known	0.00	0	3918.5	0	3704;4133	n	0.00	4	5359.5	4	5052;5667	y	0.00	0	7519.5	0	7427;7612	n	0.00	0	4709.5	0	4599;4820	n	0.00	0	5477.5	0	5238;5717	n	0.00	0	3825.5	0	3657;3994	n	0.00	0	5751.0	0	5293;6209	n	0.00	3	3586.0	3	3475;3697	y	0.00	0	2983.0	0	2848;3118	n	0.00	4	5923.0	4	5554;6292	y	0.00	0	3610.0	0	3387;3833	n	0.00	0	4078.5	0	3890;4267	n	ENSMUSG00000063229.16	Ldha	chr7	protein_coding	lactate dehydrogenase A
known_NIR_17801	chr7	46542308	46550775	-	46542308	46556799	A5SS	ENSMUST00000209538.2	known	0.99	133	2	133	2	y	0.99	145	2	145	2	y	1.00	215	1	215	1	n	0.97	148	5	148	5	y	0.98	173	3	173	3	y	0.99	77	1	77	1	n	0.98	201	4	201	4	y	1.00	104	0	104	0	n	0.98	112	2	112	2	y	0.99	159	2	159	2	y	0.97	141	5	141	5	y	0.96	148	6	148	6	y	ENSMUSG00000014402.16	Tsg101	chr7	protein_coding	tumor susceptibility gene 101
known_NIR_17802	chr7	46553336	46556799	-	46542308	46556799	A3SS	ENSMUST00000209538.2	known	0.98	126	2	126	2	y	0.98	121	2	121	2	y	0.99	184	1	184	1	n	0.97	153	5	153	5	y	0.98	172	3	172	3	y	0.99	105	1	105	1	n	0.98	163	4	163	4	y	1.00	93	0	93	0	n	0.98	111	2	111	2	y	0.99	186	2	186	2	y	0.97	139	5	139	5	y	0.96	163	6	163	6	y	ENSMUSG00000014402.16	Tsg101	chr7	protein_coding	tumor susceptibility gene 101
known_NIR_17803	chr7	46558711	46560493	-	46558739	46560493	A3SS	ENSMUST00000211076.2	known	0.15	3	17	3	17	y	0.08	1	12	1	12	n	0.00	0	31	0	31	n	0.29	2	5	2	5	n	0.16	3	16	3	16	y	0.09	1	10	1	10	n	0.32	9	19	9	19	y	0.40	2	3	2	3	n	0.17	4	20	4	20	y	0.32	8	17	8	17	y	0.28	7	18	7	18	y	0.22	5	18	5	18	y	ENSMUSG00000014402.16	Tsg101	chr7	protein_coding	tumor susceptibility gene 101
known_NIR_17804	chr7	46558711	46560493	-	46558816	46560493	A3SS	ENSMUST00000014546.15	known	0.06	3	49	3	49	y	0.03	1	38	1	38	n	0.00	0	85	0	85	n	0.05	2	42	2	42	y	0.07	3	39	3	39	y	0.03	1	29	1	29	n	0.11	9	71	9	71	y	0.06	2	31	2	31	y	0.08	4	44	4	44	y	0.10	8	70	8	70	y	0.14	7	44	7	44	y	0.08	5	59	5	59	y	ENSMUSG00000014402.16	Tsg101	chr7	protein_coding	tumor susceptibility gene 101
known_NIR_17805	chr7	46558739	46560493	-	46558816	46560493	A3SS	ENSMUST00000014546.15	known	0.26	17	49	17	49	y	0.24	12	38	12	38	y	0.27	31	85	31	85	y	0.11	5	42	5	42	y	0.29	16	39	16	39	y	0.26	10	29	10	29	y	0.21	19	71	19	71	y	0.09	3	31	3	31	y	0.31	20	44	20	44	y	0.20	17	70	17	70	y	0.29	18	44	18	44	y	0.23	18	59	18	59	y	ENSMUSG00000014402.16	Tsg101	chr7	protein_coding	tumor susceptibility gene 101
known_NIR_17806	chr7	46560558	46569569	-	46560558;46563210	46563126;46569569	ES	ENSMUST00000014546.15	known	0.00	0	52.5	0	43;62	n	0.00	0	53.0	0	53;53	n	0.02	2	105.5	2	112;99	y	0.00	0	69.0	0	54;84	n	0.00	0	85.0	0	79;91	n	0.00	0	43.0	0	36;50	n	0.00	0	86.0	0	88;84	n	0.00	0	51.0	0	43;59	n	0.00	0	55.5	0	57;54	n	0.00	0	82.5	0	84;81	n	0.00	0	58.0	0	58;58	n	0.00	0	83.5	0	80;87	n	ENSMUSG00000014402.16	Tsg101	chr7	protein_coding	tumor susceptibility gene 101
known_NIR_17807	chr7	46590025	46593536	-	46590051	46593536	A3SS	ENSMUST00000094398.13	known	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	18	0	18	n	0.06	1	16	1	16	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.08	1	11	1	11	n	0.00	0	19	0	19	n	0.00	0	3	0	3	n	0.13	2	13	2	13	y	ENSMUSG00000043262.17	Uevld	chr7	protein_coding	UEV and lactate/malate dehyrogenase domains
known_NIR_17808	chr7	4665241	4666380	-	4663844	4666380	A3SS	ENSMUST00000079970.6	known	0.00	0	98	0	98	n	0.00	0	117	0	117	n	0.00	0	100	0	100	n	0.00	0	106	0	106	n	0.08	10	111	10	111	y	0.00	0	57	0	57	n	0.00	0	128	0	128	n	0.00	0	36	0	36	n	0.00	0	73	0	73	n	0.00	0	135	0	135	n	0.00	0	121	0	121	n	0.06	7	108	7	108	y	ENSMUSG00000063802.6	Hspbp1	chr7	protein_coding	HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1
known_NIR_17809	chr7	4667271	4667519	-	4666491	4667519	A3SS	ENSMUST00000079970.6	known	0.00	0	61	0	61	n	0.00	0	87	0	87	n	0.00	0	76	0	76	n	0.00	0	78	0	78	n	0.00	0	92	0	92	n	0.00	0	30	0	30	n	0.02	2	80	2	80	y	0.00	0	26	0	26	n	0.03	2	63	2	63	y	0.02	2	100	2	100	y	0.00	0	84	0	84	n	0.00	0	74	0	74	n	ENSMUSG00000063802.6	Hspbp1	chr7	protein_coding	HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1
known_NIR_17810	chr7	4687481	4687893	-	4687568	4687893	A3SS	ENSMUST00000079970.6	known	0.62	13	8	13	8	y	0.46	13	15	13	15	y	0.23	3	10	3	10	y	0.48	12	13	12	13	y	0.45	10	12	10	12	y	0.44	4	5	4	5	n	0.39	9	14	9	14	y	0.54	7	6	7	6	y	0.39	7	11	7	11	y	0.36	10	18	10	18	y	0.50	12	12	12	12	y	0.52	12	11	12	11	y	ENSMUSG00000063802.6	Hspbp1	chr7	protein_coding	HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1
known_NIR_17811	chr7	4687565	4687893	-	4687481	4687893	A3SS	ENSMUST00000205952.2	known	0.59	19	13	19	13	y	0.65	24	13	24	13	y	0.86	18	3	18	3	y	0.67	24	12	24	12	y	0.74	29	10	29	10	y	0.71	10	4	10	4	y	0.68	19	9	19	9	y	0.72	18	7	18	7	y	0.68	15	7	15	7	y	0.80	39	10	39	10	y	0.70	28	12	28	12	y	0.72	31	12	31	12	y	ENSMUSG00000063802.6	Hspbp1	chr7	protein_coding	HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1
known_NIR_17812	chr7	4687565	4687893	-	4687568	4687893	A3SS	ENSMUST00000079970.6	known	0.70	19	8	19	8	y	0.62	24	15	24	15	y	0.64	18	10	18	10	y	0.65	24	13	24	13	y	0.71	29	12	29	12	y	0.67	10	5	10	5	y	0.58	19	14	19	14	y	0.75	18	6	18	6	y	0.58	15	11	15	11	y	0.68	39	18	39	18	y	0.70	28	12	28	12	y	0.74	31	11	31	11	y	ENSMUSG00000063802.6	Hspbp1	chr7	protein_coding	HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1
known_NIR_17813	chr7	4744980	4745618	+	4744980	4745121	3pMXE	ENSMUST00000129927.2	known	0.00	0	27	0	27	n	0.00	0	24	0	24	n	0.11	2	16	2	16	y	0.00	0	19	0	19	n	0.07	3	37	3	37	y	0.00	0	13	0	13	n	0.00	0	34	0	34	n	0.00	0	21	0	21	n	0.00	0	24	0	24	n	0.00	0	28	0	28	n	0.00	0	22	0	22	n	0.00	0	30	0	30	n	ENSMUSG00000059851.16	Kmt5c	chr7	protein_coding	lysine methyltransferase 5C
known_NIR_17814	chr7	4744980	4745618	+	4744980;4745286	4745121;4745618	ES	ENSMUST00000098853.9	known	0.00	0	25.0	0	27;23	n	0.00	0	20.5	0	24;17	n	0.09	2	19.5	2	16;23	y	0.00	0	20.5	0	19;22	n	0.07	3	40.5	3	37;44	y	0.00	0	11.5	0	13;10	n	0.00	0	27.0	0	34;20	n	0.00	0	18.5	0	21;16	n	0.00	0	22.0	0	24;20	n	0.00	0	23.0	0	28;18	n	0.00	0	17.0	0	22;12	n	0.00	0	29.5	0	30;29	n	ENSMUSG00000059851.16	Kmt5c	chr7	protein_coding	lysine methyltransferase 5C
known_NIR_17815	chr7	4745727	4745950	+	4745727	4745946	A3SS	ENSMUST00000098853.9	known	0.00	0	19	0	19	n	0.00	0	18	0	18	n	0.00	0	26	0	26	n	0.00	0	26	0	26	n	0.00	0	41	0	41	n	0.06	1	17	1	17	n	0.03	1	32	1	32	n	0.00	0	23	0	23	n	0.04	1	24	1	24	n	0.07	2	28	2	28	y	0.00	0	21	0	21	n	0.03	1	28	1	28	n	ENSMUSG00000059851.16	Kmt5c	chr7	protein_coding	lysine methyltransferase 5C
known_NIR_17816	chr7	4788278;4788537	4788474;4792004	-	4788278	4792004	cassetteExon	ENSMUST00000168578.3	known	0.02	3.0	136	4;2	136	y	0.00	0.5	141	0;1	141	n	0.02	2.0	93	1;3	93	n	0.01	1.0	116	0;2	116	n	0.01	1.0	143	1;1	143	n	0.04	3.0	79	3;3	79	y	0.02	4.0	157	4;4	157	y	0.00	0.0	55	0;0	55	n	0.02	1.5	88	1;2	88	n	0.01	2.0	170	2;2	170	y	0.03	4.0	154	3;5	154	y	0.02	2.0	119	2;2	119	y	ENSMUSG00000030431.9	Tmem238	chr7	protein_coding	transmembrane protein 238
known_NIR_17817	chr7	4796625	4797049	+	4796625	4797063	A3SS	ENSMUST00000032597.12	known	0.01	13	2359	13	2359	y	0.01	18	2690	18	2690	y	0.01	24	2675	24	2675	y	0.00	0	1917	0	1917	n	0.01	16	2723	16	2723	y	0.00	7	1555	7	1555	y	0.01	25	2759	25	2759	y	0.00	0	1565	0	1565	n	0.00	0	1957	0	1957	n	0.00	0	2707	0	2707	n	0.01	16	2642	16	2642	y	0.01	13	2574	13	2574	y	ENSMUSG00000030432.13	Rpl28	chr7	protein_coding	ribosomal protein L28
known_NIR_17818	chr7	48489306	48494829	-	48489306	48493344	5pMXE	ENSMUST00000167786.4	known	0.06	5	84	5	84	y	0.02	2	102	2	102	y	0.12	5	35	5	35	y	0.00	0	104	0	104	n	0.06	8	122	8	122	y	0.06	3	48	3	48	y	0.02	2	129	2	129	y	0.09	6	61	6	61	y	0.03	3	102	3	102	y	0.03	7	214	7	214	y	0.02	3	121	3	121	y	0.00	0	76	0	76	n	ENSMUSG00000030470.16	Csrp3	chr7	protein_coding	cysteine and glycine-rich protein 3
known_NIR_17819	chr7	48489306	48494829	-	48489306	48497746	A5SS	ENSMUST00000032658.14	known	1.00	5	0	5	0	n	1.00	2	0	2	0	n	0.56	5	4	5	4	n	0.00	0	1	0	1	n	0.89	8	1	8	1	n	0.60	3	2	3	2	n	0.09	2	20	2	20	y	1.00	6	0	6	0	n	1.00	3	0	3	0	n	0.88	7	1	7	1	n	1.00	3	0	3	0	n	-	-	-	-	-	-	ENSMUSG00000030470.16	Csrp3	chr7	protein_coding	cysteine and glycine-rich protein 3
known_NIR_17820	chr7	48489306	48497746	-	48489306	48493344	5pMXE	ENSMUST00000167786.4	known	0.00	0	84	0	84	n	0.00	0	102	0	102	n	0.10	4	35	4	35	y	0.01	1	104	1	104	n	0.01	1	122	1	122	n	0.04	2	48	2	48	y	0.13	20	129	20	129	y	0.00	0	61	0	61	n	0.00	0	102	0	102	n	0.00	1	214	1	214	n	0.00	0	121	0	121	n	0.00	0	76	0	76	n	ENSMUSG00000030470.16	Csrp3	chr7	protein_coding	cysteine and glycine-rich protein 3
known_NIR_17821	chr7	48527860	48528079	+	48527860	48548457	A3SS	ENSMUST00000210463.2	known	0.72	59	23	59	23	y	0.81	88	20	88	20	y	0.81	30	7	30	7	y	0.74	63	22	63	22	y	0.73	123	46	123	46	y	1.00	28	0	28	0	n	0.78	143	41	143	41	y	0.87	40	6	40	6	y	0.75	85	28	85	28	y	0.82	151	33	151	33	y	0.69	81	36	81	36	y	0.81	43	10	43	10	y	ENSMUSG00000085995.3	Gm2788	chr7	lncRNA	predicted gene 2788
known_NIR_17822	chr7	48527860	48528082	+	48527860	48528079	A3SS	ENSMUST00000129551.2	known	0.23	18	59	18	59	y	0.19	21	88	21	88	y	0.30	13	30	13	30	y	0.20	16	63	16	63	y	0.24	38	123	38	123	y	0.20	7	28	7	28	y	0.21	37	143	37	143	y	0.22	11	40	11	40	y	0.16	16	85	16	85	y	0.17	30	151	30	151	y	0.32	38	81	38	81	y	0.17	9	43	9	43	y	ENSMUSG00000085995.3	Gm2788	chr7	lncRNA	predicted gene 2788
known_NIR_17823	chr7	48527860	48528082	+	48527860	48548457	A3SS	ENSMUST00000210463.2	known	0.44	18	23	18	23	y	0.51	21	20	21	20	y	0.65	13	7	13	7	y	0.42	16	22	16	22	y	0.45	38	46	38	46	y	1.00	7	0	7	0	n	0.47	37	41	37	41	y	0.65	11	6	11	6	y	0.36	16	28	16	28	y	0.48	30	33	30	33	y	0.51	38	36	38	36	y	0.47	9	10	9	10	y	ENSMUSG00000085995.3	Gm2788	chr7	lncRNA	predicted gene 2788
known_NIR_17824	chr7	48528195	48530381	+	48528195	48535185	A3SS	ENSMUST00000129551.2	known	0.04	2	50	2	50	y	0.01	1	101	1	101	n	0.02	1	46	1	46	n	0.03	2	57	2	57	y	0.03	5	175	5	175	y	0.13	2	13	2	13	y	0.02	4	166	4	166	y	0.03	1	37	1	37	n	0.04	4	86	4	86	y	0.04	7	185	7	185	y	0.03	3	99	3	99	y	0.02	1	44	1	44	n	ENSMUSG00000085995.3	Gm2788	chr7	lncRNA	predicted gene 2788
known_NIR_17825	chr7	48531265	48535185	+	48528195	48535185	A5SS	ENSMUST00000129551.2	known	0.02	1	50	1	50	n	0.00	0	101	0	101	n	0.00	0	46	0	46	n	0.03	2	57	2	57	y	0.04	7	175	7	175	y	0.35	7	13	7	13	y	0.04	7	166	7	166	y	0.00	0	37	0	37	n	0.05	5	86	5	86	y	0.01	2	185	2	185	y	0.03	3	99	3	99	y	0.04	2	44	2	44	y	ENSMUSG00000085995.3	Gm2788	chr7	lncRNA	predicted gene 2788
known_NIR_17826	chr7	48531265	48535185	+	48534871	48535185	A5SS&ES	ENSMUST00000209288.2	known	0.17	1	5	1	5	n	0.00	0	23	0	23	n	0.00	0	12	0	12	n	0.12	2	15	2	15	y	0.13	7	46	7	46	y	0.54	7	6	7	6	y	0.15	7	41	7	41	y	0.00	0	17	0	17	n	0.18	5	23	5	23	y	0.04	2	44	2	44	y	0.12	3	21	3	21	y	0.11	2	16	2	16	y	ENSMUSG00000085995.3	Gm2788	chr7	lncRNA	predicted gene 2788
known_NIR_17827	chr7	48534871	48535185	+	48528195	48535185	A5SS	ENSMUST00000129551.2	known	0.09	5	50	5	50	y	0.19	23	101	23	101	y	0.21	12	46	12	46	y	0.21	15	57	15	57	y	0.21	46	175	46	175	y	0.32	6	13	6	13	y	0.20	41	166	41	166	y	0.31	17	37	17	37	y	0.21	23	86	23	86	y	0.19	44	185	44	185	y	0.17	21	99	21	99	y	0.27	16	44	16	44	y	ENSMUSG00000085995.3	Gm2788	chr7	lncRNA	predicted gene 2788
known_NIR_17828	chr7	48537178	48548457	+	48527860	48548457	A5SS	ENSMUST00000210463.2	known	0.00	0	23	0	23	n	0.05	1	20	1	20	n	0.00	0	7	0	7	n	0.00	0	22	0	22	n	0.00	0	46	0	46	n	-	-	-	-	-	-	0.07	3	41	3	41	y	0.00	0	6	0	6	n	0.07	2	28	2	28	y	0.13	5	33	5	33	y	0.00	0	36	0	36	n	0.00	0	10	0	10	n	ENSMUSG00000085995.3	Gm2788	chr7	lncRNA	predicted gene 2788
known_NIR_17829	chr7	48556469	48557616	+	48548812	48557616	A5SS	ENSMUST00000209849.2	known	0.43	6	8	6	8	y	0.58	11	8	11	8	y	0.50	3	3	3	3	n	0.70	7	3	7	3	y	0.78	21	6	21	6	y	1.00	4	0	4	0	n	0.62	23	14	23	14	y	0.67	2	1	2	1	n	0.72	13	5	13	5	y	0.58	15	11	15	11	y	0.76	13	4	13	4	y	0.83	5	1	5	1	n	ENSMUSG00000085995.3	Gm2788	chr7	lncRNA	predicted gene 2788
known_NIR_17830	chr7	49107956	49111657	+	49107956	49111660	A3SS	ENSMUST00000183659.8	known	1.00	5	0	5	0	n	1.00	2	0	2	0	n	0.73	8	3	8	3	y	0.43	3	4	3	4	n	0.42	5	7	5	7	y	0.78	7	2	7	2	n	0.71	5	2	5	2	n	0.50	6	6	6	6	y	0.67	8	4	8	4	y	0.60	6	4	6	4	y	1.00	4	0	4	0	n	0.50	3	3	3	3	n	ENSMUSG00000052512.18	Nav2	chr7	protein_coding	neuron navigator 2
known_NIR_17831	chr7	49201797	49202588	+	49201797	49206658	A3SS	ENSMUST00000184109.2	known	1.00	6	0	6	0	n	0.89	8	1	8	1	n	0.76	16	5	16	5	y	0.50	4	4	4	4	n	1.00	16	0	16	0	n	0.83	5	1	5	1	n	0.88	7	1	7	1	n	0.75	9	3	9	3	y	0.92	11	1	11	1	n	1.00	16	0	16	0	n	1.00	5	0	5	0	n	0.83	5	1	5	1	n	ENSMUSG00000052512.18	Nav2	chr7	protein_coding	neuron navigator 2
known_NIR_17832	chr7	49204007	49206658	+	49201797	49206658	A5SS	ENSMUST00000184109.2	known	1.00	3	0	3	0	n	0.83	5	1	5	1	n	0.74	14	5	14	5	y	0.69	9	4	9	4	y	1.00	12	0	12	0	n	0.93	14	1	14	1	n	0.89	8	1	8	1	n	0.81	13	3	13	3	y	0.94	15	1	15	1	n	1.00	12	0	12	0	n	1.00	7	0	7	0	n	0.90	9	1	9	1	n	ENSMUSG00000052512.18	Nav2	chr7	protein_coding	neuron navigator 2
known_NIR_17833	chr7	49409059	49409290	+	49408893	49409290	A5SS	ENSMUST00000208048.2	known	0.17	1	5	1	5	n	0.43	6	8	6	8	y	0.58	7	5	7	5	y	0.12	2	14	2	14	y	0.32	7	15	7	15	y	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.19	5	21	5	21	y	0.00	0	10	0	10	n	0.38	9	15	9	15	y	ENSMUSG00000039745.9	Htatip2	chr7	protein_coding	HIV-1 Tat interactive protein 2
known_NIR_17834	chr7	49409059	49409346	+	49409059	49409290	A3SS	ENSMUST00000085272.7	known	0.99	70	1	70	1	n	0.89	48	6	48	6	y	0.81	30	7	30	7	y	0.96	53	2	53	2	y	0.93	88	7	88	7	y	1.00	26	0	26	0	n	1.00	59	0	59	0	n	1.00	30	0	30	0	n	1.00	55	0	55	0	n	0.95	95	5	95	5	y	1.00	74	0	74	0	n	0.87	60	9	60	9	y	ENSMUSG00000039745.9	Htatip2	chr7	protein_coding	HIV-1 Tat interactive protein 2
known_NIR_17835	chr7	49430091	49430869	+	49430139	49430869	A5SS	ENSMUST00000140656.8	known	0.43	6	8	6	8	y	0.00	0	3	0	3	n	0.25	3	9	3	9	y	0.08	1	11	1	11	n	0.29	2	5	2	5	n	0.67	2	1	2	1	n	0.18	3	14	3	14	y	0.40	2	3	2	3	n	0.36	5	9	5	9	y	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.67	2	1	2	1	n	ENSMUSG00000030505.18	Prmt3	chr7	protein_coding	protein arginine N-methyltransferase 3
known_NIR_17836	chr7	4997911	4999003	-	4996551	4999003	A3SS	ENSMUST00000160225.2	known	0.17	2	10	2	10	y	0.12	1	7	1	7	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.67	2	1	2	1	n	0.33	2	4	2	4	n	0.33	1	2	1	2	n	ENSMUSG00000051550.11	Zfp579	chr7	protein_coding	zinc finger protein 579
known_NIR_17837	chr7	5016021	5017083	-	5016021	5017624	A5SS	ENSMUST00000077385.15	known	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.00	0	26	0	26	n	0.00	0	17	0	17	n	0.03	1	30	1	30	n	0.00	0	10	0	10	n	0.14	3	18	3	18	y	0.06	1	15	1	15	n	0.00	0	14	0	14	n	0.04	1	23	1	23	n	0.12	2	15	2	15	y	0.04	1	22	1	22	n	ENSMUSG00000061374.15	Fiz1	chr7	protein_coding	Flt3 interacting zinc finger protein 1
known_NIR_17838	chr7	5016021	5017536	-	5016021	5017108	5pMXE	ENSMUST00000167804.9	known	0.80	4	1	4	1	n	0.50	2	2	2	2	n	-	-	-	-	-	-	0.75	6	2	6	2	n	1.00	3	0	3	0	n	1.00	3	0	3	0	n	0.60	6	4	6	4	y	1.00	2	0	2	0	n	1.00	2	0	2	0	n	0.62	5	3	5	3	n	0.62	5	3	5	3	n	0.75	3	1	3	1	n	ENSMUSG00000061374.15	Fiz1	chr7	protein_coding	Flt3 interacting zinc finger protein 1
known_NIR_17839	chr7	5016021	5017536	-	5016021	5017624	A5SS	ENSMUST00000077385.15	known	0.20	4	16	4	16	y	0.13	2	13	2	13	y	0.00	0	26	0	26	n	0.26	6	17	6	17	y	0.09	3	30	3	30	y	0.23	3	10	3	10	y	0.25	6	18	6	18	y	0.12	2	15	2	15	y	0.12	2	14	2	14	y	0.18	5	23	5	23	y	0.25	5	15	5	15	y	0.12	3	22	3	22	y	ENSMUSG00000061374.15	Fiz1	chr7	protein_coding	Flt3 interacting zinc finger protein 1
known_NIR_17840	chr7	5016021	5017624	-	5016021	5017108	5pMXE	ENSMUST00000167804.9	known	0.94	16	1	16	1	n	0.87	13	2	13	2	y	1.00	26	0	26	0	n	0.89	17	2	17	2	y	1.00	30	0	30	0	n	1.00	10	0	10	0	n	0.82	18	4	18	4	y	1.00	15	0	15	0	n	1.00	14	0	14	0	n	0.88	23	3	23	3	y	0.83	15	3	15	3	y	0.96	22	1	22	1	n	ENSMUSG00000061374.15	Fiz1	chr7	protein_coding	Flt3 interacting zinc finger protein 1
known_NIR_17841	chr7	5018559	5020436	+	5020043	5020436	A5SS&ES	ENSMUST00000207901.2	known	0.89	25	3	25	3	y	0.78	18	5	18	5	y	0.87	27	4	27	4	y	1.00	42	0	42	0	n	0.95	41	2	41	2	y	0.67	12	6	12	6	y	0.88	36	5	36	5	y	0.96	22	1	22	1	n	0.88	30	4	30	4	y	1.00	39	0	39	0	n	0.93	37	3	37	3	y	0.97	31	1	31	1	n	ENSMUSG00000051184.8	Zfp524	chr7	protein_coding	zinc finger protein 524
known_NIR_17842	chr7	5018887	5020436	+	5018559	5020436	A5SS	ENSMUST00000086349.5	known	0.11	3	25	3	25	y	0.00	0	18	0	18	n	0.00	0	27	0	27	n	0.00	0	42	0	42	n	0.05	2	41	2	41	y	0.00	0	12	0	12	n	0.00	0	36	0	36	n	0.00	0	22	0	22	n	0.03	1	30	1	30	n	0.00	0	39	0	39	n	0.00	0	37	0	37	n	0.00	0	31	0	31	n	ENSMUSG00000051184.8	Zfp524	chr7	protein_coding	zinc finger protein 524
known_NIR_17843	chr7	5023654	5031990	+	5023654	5035762	A3SS	ENSMUST00000207362.2	known	0.92	11	1	11	1	n	0.50	6	6	6	6	y	0.38	3	5	3	5	n	0.92	12	1	12	1	n	0.50	7	7	7	7	y	0.43	3	4	3	4	n	0.83	5	1	5	1	n	0.60	6	4	6	4	y	0.67	10	5	10	5	y	0.69	9	4	9	4	y	0.33	4	8	4	8	y	0.44	4	5	4	5	n	ENSMUSG00000074405.9	Zfp865	chr7	protein_coding	zinc finger protein 865
known_NIR_17844	chr7	5023654	5035762	+	5023654;5034278	5031990;5035762	ES	ENSMUST00000085427.6	known	0.14	1	6.0	1	11;1	n	0.57	6	4.5	6	6;3	y	0.67	5	2.5	5	3;2	y	0.14	1	6.0	1	12;0	n	0.67	7	3.5	7	7;0	n	0.73	4	1.5	4	3;0	n	0.29	1	2.5	1	5;0	n	0.57	4	3.0	4	6;0	n	0.50	5	5.0	5	10;0	n	0.47	4	4.5	4	9;0	n	0.73	8	3.0	8	4;2	y	0.67	5	2.5	5	4;1	n	ENSMUSG00000074405.9	Zfp865	chr7	protein_coding	zinc finger protein 865
known_NIR_17845	chr7	5023654	5035762	+	5023654;5035206	5031990;5035762	ES	ENSMUST00000076251.7	known	0.15	1	5.5	1	11;0	n	0.67	6	3.0	6	6;0	n	0.71	5	2.0	5	3;1	n	0.12	1	7.0	1	12;2	n	0.61	7	4.5	7	7;2	y	0.73	4	1.5	4	3;0	n	0.25	1	3.0	1	5;1	n	0.57	4	3.0	4	6;0	n	0.50	5	5.0	5	10;0	n	0.42	4	5.5	4	9;2	y	0.70	8	3.5	8	4;3	y	0.62	5	3.0	5	4;2	y	ENSMUSG00000074405.9	Zfp865	chr7	protein_coding	zinc finger protein 865
known_NIR_17846	chr7	5034278	5035762	+	5023654	5035762	A5SS	ENSMUST00000207362.2	known	0.50	1	1	1	1	n	0.33	3	6	3	6	n	0.29	2	5	2	5	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.20	2	8	2	8	y	0.17	1	5	1	5	n	ENSMUSG00000074405.9	Zfp865	chr7	protein_coding	zinc finger protein 865
known_NIR_17847	chr7	5035206	5035762	+	5023654	5035762	A5SS	ENSMUST00000207362.2	known	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.17	1	5	1	5	n	0.67	2	1	2	1	n	0.22	2	7	2	7	n	0.00	0	4	0	4	n	0.50	1	1	1	1	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.33	2	4	2	4	n	0.27	3	8	3	8	y	0.29	2	5	2	5	n	ENSMUSG00000074405.9	Zfp865	chr7	protein_coding	zinc finger protein 865
known_NIR_17848	chr7	5069537	5070353	+	5069537	5070209	A3SS&ES	ENSMUST00000005041.15	known	0.00	0	112	0	112	n	0.00	0	101	0	101	n	0.00	0	170	0	170	n	0.00	0	138	0	138	n	0.00	0	187	0	187	n	0.00	0	83	0	83	n	0.00	0	150	0	150	n	0.03	3	91	3	91	y	0.00	0	109	0	109	n	0.00	0	173	0	173	n	0.00	0	137	0	137	n	0.00	0	157	0	157	n	ENSMUSG00000030435.17	U2af2	chr7	protein_coding	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2
known_NIR_17849	chr7	5071182	5072443	+	5071182	5071732	A3SS	ENSMUST00000207926.2	known	0.88	106	14	106	14	y	0.89	108	13	108	13	y	0.93	148	11	148	11	y	0.93	154	11	154	11	y	0.95	144	8	144	8	y	0.96	97	4	97	4	y	0.88	143	19	143	19	y	0.93	93	7	93	7	y	0.94	108	7	108	7	y	0.91	163	16	163	16	y	0.92	132	12	132	12	y	0.90	149	16	149	16	y	ENSMUSG00000030435.17	U2af2	chr7	protein_coding	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2
known_NIR_17850	chr7	5071182;5071795	5071732;5072443	+	5071182	5072443	cassetteExon	ENSMUST00000005041.15	known	0.06	7.0	106	14;0	106	n	0.06	7.5	108	13;2	108	y	0.04	5.5	148	11;0	148	n	0.03	5.5	154	11;0	154	n	0.03	4.0	144	8;0	144	n	0.02	2.0	97	4;0	97	n	0.07	10.5	143	19;2	143	y	0.04	4.0	93	7;1	93	n	0.03	3.5	108	7;0	108	n	0.05	8.0	163	16;0	163	n	0.04	6.0	132	12;0	132	n	0.06	10.0	149	16;4	149	y	ENSMUSG00000030435.17	U2af2	chr7	protein_coding	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2
known_NIR_17851	chr7	5078238	5078467	+	5078226	5078467	A5SS	ENSMUST00000005041.15	known	0.13	24	165	24	165	y	0.19	32	135	32	135	y	0.24	51	162	51	162	y	0.23	42	138	42	138	y	0.22	60	218	60	218	y	0.22	28	98	28	98	y	0.21	48	185	48	185	y	0.22	31	113	31	113	y	0.18	32	144	32	144	y	0.25	54	162	54	162	y	0.19	35	149	35	149	y	0.20	39	160	39	160	y	ENSMUSG00000030435.17	U2af2	chr7	protein_coding	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2
known_NIR_17852	chr7	5083476	5086729	+	5083476	5085017	A3SS&ES	ENSMUST00000098845.10	known	0.07	11	139	11	139	y	0.04	4	101	4	101	y	0.00	0	136	0	136	n	0.01	2	172	2	172	y	0.02	3	190	3	190	y	0.03	3	83	3	83	y	0.03	4	150	4	150	y	0.01	1	85	1	85	n	0.00	0	117	0	117	n	0.05	11	223	11	223	y	0.01	2	152	2	152	y	0.03	5	191	5	191	y	ENSMUSG00000035203.17	Epn1	chr7	protein_coding	epsin 1
known_NIR_17853	chr7	5083476	5086729	+	5083476;5085120	5085017;5086729	ES	ENSMUST00000146317.8	known	0.11	11	90.0	11	139;41	y	0.05	4	69.0	4	101;37	y	0.00	0	82.0	0	136;28	n	0.02	2	112.5	2	172;53	y	0.02	3	125.0	3	190;60	y	0.06	3	50.0	3	83;17	y	0.04	4	106.5	4	150;63	y	0.02	1	50.0	1	85;15	n	0.00	0	84.0	0	117;51	n	0.07	11	143.5	11	223;64	y	0.02	2	97.5	2	152;43	y	0.04	5	115.0	5	191;39	y	ENSMUSG00000035203.17	Epn1	chr7	protein_coding	epsin 1
known_NIR_17854	chr7	5083637	5085017	+	5083476	5085017	A5SS	ENSMUST00000098845.10	known	0.19	32	139	32	139	y	0.20	25	101	25	101	y	0.18	30	136	30	136	y	0.18	38	172	38	172	y	0.18	43	190	43	190	y	0.18	18	83	18	83	y	0.16	29	150	29	150	y	0.21	22	85	22	85	y	0.20	29	117	29	117	y	0.17	45	223	45	223	y	0.15	27	152	27	152	y	0.11	24	191	24	191	y	ENSMUSG00000035203.17	Epn1	chr7	protein_coding	epsin 1
known_NIR_17855	chr7	5085120	5086729	+	5085120	5086662	A3SS	ENSMUST00000098845.10	known	0.21	41	153	41	153	y	0.20	37	144	37	144	y	0.13	28	187	28	187	y	0.22	53	184	53	184	y	0.21	60	223	60	223	y	0.13	17	114	17	114	y	0.22	63	222	63	222	y	0.10	15	141	15	141	y	0.30	51	121	51	121	y	0.19	64	281	64	281	y	0.19	43	186	43	186	y	0.13	39	261	39	261	y	ENSMUSG00000035203.17	Epn1	chr7	protein_coding	epsin 1
known_NIR_17856	chr7	5086981	5093002	+	5086981	5092918	A3SS	ENSMUST00000098845.10	known	0.00	0	358	0	358	n	0.02	8	357	8	357	y	0.00	0	326	0	326	n	0.02	10	413	10	413	y	0.02	12	472	12	472	y	0.01	2	205	2	205	y	0.02	12	509	12	509	y	0.00	0	255	0	255	n	0.00	0	339	0	339	n	0.02	10	573	10	573	y	0.02	9	399	9	399	y	0.01	6	498	6	498	y	ENSMUSG00000035203.17	Epn1	chr7	protein_coding	epsin 1
known_NIR_17857	chr7	5098752	5098887	+	5098752	5098890	A3SS	ENSMUST00000098845.10	known	0.54	206	175	206	175	y	0.49	228	233	228	233	y	0.49	143	149	143	149	y	0.52	213	200	213	200	y	0.48	246	263	246	263	y	0.51	113	107	113	107	y	0.49	255	262	255	262	y	0.46	96	112	96	112	y	0.46	159	183	159	183	y	0.49	308	326	308	326	y	0.48	205	225	205	225	y	0.53	240	212	240	212	y	ENSMUSG00000035203.17	Epn1	chr7	protein_coding	epsin 1
known_NIR_17858	chr7	51513841	51514030	+	51512192	51514030	A5SS	ENSMUST00000129604.8	known	0.55	6	5	6	5	y	0.80	8	2	8	2	y	0.80	8	2	8	2	y	0.71	10	4	10	4	y	1.00	10	0	10	0	n	0.73	8	3	8	3	y	0.70	14	6	14	6	y	1.00	5	0	5	0	n	0.60	9	6	9	6	y	0.76	13	4	13	4	y	0.33	3	6	3	6	n	1.00	9	0	9	0	n	ENSMUSG00000030498.16	Gas2	chr7	protein_coding	growth arrest specific 2
known_NIR_17859	chr7	51603049	51606125	+	51603049	51643039	A3SS	ENSMUST00000129604.8	known	0.00	0	77	0	77	n	0.03	2	59	2	59	y	0.03	1	28	1	28	n	0.02	2	104	2	104	y	0.00	0	90	0	90	n	0.07	1	14	1	14	n	0.00	0	81	0	81	n	0.00	0	35	0	35	n	0.01	1	98	1	98	n	0.01	2	153	2	153	y	0.00	0	96	0	96	n	0.00	0	189	0	189	n	ENSMUSG00000030498.16	Gas2	chr7	protein_coding	growth arrest specific 2
known_NIR_17860	chr7	55546563	55547986	+	55547720	55547986	5pMXE	ENSMUST00000173384.2	known	1.00	21	0	21	0	n	1.00	16	0	16	0	n	0.97	39	1	39	1	n	1.00	35	0	35	0	n	1.00	46	0	46	0	n	1.00	14	0	14	0	n	1.00	34	0	34	0	n	0.94	31	2	31	2	y	1.00	25	0	25	0	n	0.98	56	1	56	1	n	0.96	26	1	26	1	n	1.00	48	0	48	0	n	ENSMUSG00000030447.16	Cyfip1	chr7	protein_coding	cytoplasmic FMR1 interacting protein 1
known_NIR_17861	chr7	55587410	55594229	-	55587410;55592784	55592728;55594229	ES	ENSMUST00000119041.8	known	0.00	0	40.5	0	39;42	n	0.00	0	59.0	0	61;57	n	0.01	1	134.5	1	146;123	n	0.00	0	78.5	0	76;81	n	0.00	0	94.5	0	96;93	n	0.00	0	53.0	0	53;53	n	0.00	0	94.0	0	90;98	n	0.03	2	70.5	2	70;71	y	0.00	0	57.5	0	66;49	n	0.00	0	93.5	0	93;94	n	0.00	0	52.5	0	50;55	n	0.00	0	91.5	0	99;84	n	ENSMUSG00000030452.17	Nipa2	chr7	protein_coding	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)
known_NIR_17862	chr7	55587410	55594229	-	55592784	55594229	3pMXE	ENSMUST00000135849.8	known	0.00	0	42	0	42	n	0.00	0	57	0	57	n	0.01	1	123	1	123	n	0.00	0	81	0	81	n	0.00	0	93	0	93	n	0.00	0	53	0	53	n	0.00	0	98	0	98	n	0.03	2	71	2	71	y	0.00	0	49	0	49	n	0.00	0	94	0	94	n	0.00	0	55	0	55	n	0.00	0	84	0	84	n	ENSMUSG00000030452.17	Nipa2	chr7	protein_coding	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)
known_NIR_17863	chr7	55594457	55594707	-	55594457	55611948	A5SS	ENSMUST00000117812.8	known	0.50	4	4	4	4	n	0.67	2	1	2	1	n	0.09	2	21	2	21	y	0.44	4	5	4	5	n	0.14	2	12	2	12	y	0.11	1	8	1	8	n	0.17	2	10	2	10	y	0.00	0	6	0	6	n	0.38	5	8	5	8	y	0.17	2	10	2	10	y	0.33	5	10	5	10	y	0.25	3	9	3	9	y	ENSMUSG00000030452.17	Nipa2	chr7	protein_coding	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)
known_NIR_17864	chr7	55594457	55611948	-	55594457	55611200	A5SS&ES	ENSMUST00000119041.8	known	0.14	4	25	4	25	y	0.03	1	29	1	29	n	0.27	21	56	21	56	y	0.11	5	40	5	40	y	0.18	12	56	12	56	y	0.22	8	29	8	29	y	0.15	10	57	10	57	y	0.13	6	40	6	40	y	0.20	8	33	8	33	y	0.23	10	33	10	33	y	0.27	10	27	10	27	y	0.21	9	33	9	33	y	ENSMUSG00000030452.17	Nipa2	chr7	protein_coding	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)
known_NIR_17865	chr7	55594457;55594833	55594707;55611200	-	55594457	55611200	cassetteExon	ENSMUST00000119041.8	known	0.11	3.0	25	4;2	25	y	0.03	1.0	29	2;0	29	n	0.04	2.5	56	2;3	56	y	0.07	3.0	40	4;2	40	y	0.03	1.5	56	2;1	56	n	0.02	0.5	29	1;0	29	n	0.04	2.5	57	2;3	57	y	0.00	0.0	40	0;0	40	n	0.11	4.0	33	5;3	33	y	0.03	1.0	33	2;0	33	n	0.08	2.5	27	5;0	27	n	0.04	1.5	33	3;0	33	n	ENSMUSG00000030452.17	Nipa2	chr7	protein_coding	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)
known_NIR_17866	chr7	55594457;55611320	55611200;55611948	-	55594457	55611948	cassetteExon	ENSMUST00000117812.8	known	0.85	23.5	4	25;22	4	y	0.97	29.0	1	29;29	1	n	0.69	47.0	21	56;38	21	y	0.89	39.0	5	40;38	5	y	0.80	49.5	12	56;43	12	y	0.75	24.0	8	29;19	8	y	0.83	49.0	10	57;41	10	y	0.85	35.0	6	40;30	6	y	0.77	26.5	8	33;20	8	y	0.76	31.5	10	33;30	10	y	0.72	26.0	10	27;25	10	y	0.80	37.0	9	33;41	9	y	ENSMUSG00000030452.17	Nipa2	chr7	protein_coding	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)
known_NIR_17867	chr7	55611320	55611712	-	55611320	55611948	A5SS	ENSMUST00000032635.14	known	0.08	2	22	2	22	y	0.00	0	29	0	29	n	0.00	0	38	0	38	n	0.00	0	38	0	38	n	0.00	0	43	0	43	n	0.00	0	19	0	19	n	0.00	0	41	0	41	n	0.00	0	30	0	30	n	0.00	0	20	0	20	n	0.00	0	30	0	30	n	0.00	0	25	0	25	n	0.00	0	41	0	41	n	ENSMUSG00000030452.17	Nipa2	chr7	protein_coding	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)
known_NIR_17868	chr7	55611320	55611948	-	55611320	55611935	A5SS	ENSMUST00000119041.8	known	1.00	22	0	22	0	n	1.00	29	0	29	0	n	1.00	38	0	38	0	n	1.00	38	0	38	0	n	0.96	43	2	43	2	y	1.00	19	0	19	0	n	1.00	41	0	41	0	n	1.00	30	0	30	0	n	1.00	20	0	20	0	n	1.00	30	0	30	0	n	1.00	25	0	25	0	n	1.00	41	0	41	0	n	ENSMUSG00000030452.17	Nipa2	chr7	protein_coding	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)
known_NIR_17869	chr7	55611320	55612144	-	55611320	55611948	A5SS	ENSMUST00000032635.14	known	0.00	0	22	0	22	n	0.00	0	29	0	29	n	0.00	0	38	0	38	n	0.00	0	38	0	38	n	0.00	0	43	0	43	n	0.00	0	19	0	19	n	0.05	2	41	2	41	y	0.06	2	30	2	30	y	0.00	0	20	0	20	n	0.00	0	30	0	30	n	0.00	0	25	0	25	n	0.00	0	41	0	41	n	ENSMUSG00000030452.17	Nipa2	chr7	protein_coding	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)
known_NIR_17870	chr7	55846957	55853524	+	55846957;55851956	55851849;55853524	ES	ENSMUST00000076226.13	known	0.46	8	9.5	8	11;8	y	0.61	7	4.5	7	7;2	y	0.20	5	20.0	5	21;19	y	0.24	4	13.0	4	10;16	y	0.39	9	14.0	9	15;13	y	0.31	5	11.0	5	12;10	y	0.50	8	8.0	8	10;6	y	0.41	6	8.5	6	9;8	y	0.27	2	5.5	2	4;7	y	0.41	7	10.0	7	12;8	y	0.00	0	9.0	0	12;6	n	0.57	10	7.5	10	9;6	y	ENSMUSG00000030451.17	Herc2	chr7	protein_coding	HECT and RLD domain containing E3 ubiquitin protein ligase 2
known_NIR_17871	chr7	58879019	58896921	+	58893217	58896921	5pMXE	ENSMUST00000200709.2	known	0.33	3	6	3	6	n	0.50	2	2	2	2	n	0.32	10	21	10	21	y	0.44	11	14	11	14	y	0.58	19	14	19	14	y	0.62	10	6	10	6	y	0.20	2	8	2	8	y	0.53	8	7	8	7	y	0.11	1	8	1	8	n	0.56	9	7	9	7	y	0.45	5	6	5	6	y	0.18	3	14	3	14	y	ENSMUSG00000025326.13	Ube3a	chr7	protein_coding	ubiquitin protein ligase E3A
known_NIR_17872	chr7	58879019;58890781	58890715;58893098	+	58879019	58893098	cassetteExon	ENSMUST00000201794.4	known	0.60	1.5	1	1;2	1	n	1.00	3.0	0	4;2	0	n	0.83	5.0	1	1;9	1	n	0.71	7.5	3	7;8	3	y	1.00	8.5	0	8;9	0	n	1.00	3.0	0	2;4	0	n	0.86	6.0	1	6;6	1	n	1.00	8.5	0	9;8	0	n	1.00	0.5	0	1;0	0	n	0.83	5.0	1	4;6	1	n	1.00	5.5	0	6;5	0	n	0.88	7.5	1	9;6	1	n	ENSMUSG00000025326.13	Ube3a	chr7	protein_coding	ubiquitin protein ligase E3A
known_NIR_17873	chr7	58879019;58890781	58890715;58896921	+	58879019	58896921	cassetteExon	ENSMUST00000202945.4	known	0.14	0.5	3	1;0	3	n	0.56	2.5	2	4;1	2	n	0.05	0.5	10	1;0	10	n	0.24	3.5	11	7;0	11	n	0.17	4.0	19	8;0	19	n	0.09	1.0	10	2;0	10	n	0.64	3.5	2	6;1	2	n	0.36	4.5	8	9;0	8	n	0.33	0.5	1	1;0	1	n	0.18	2.0	9	4;0	9	n	0.38	3.0	5	6;0	5	n	0.65	5.5	3	9;2	3	y	ENSMUSG00000025326.13	Ube3a	chr7	protein_coding	ubiquitin protein ligase E3A
known_NIR_17874	chr7	58879019;58893217	58893098;58896921	+	58879019	58896921	cassetteExon	ENSMUST00000202945.4	known	0.54	3.5	3	1;6	3	n	0.33	1.0	2	0;2	2	n	0.52	11.0	10	1;21	10	n	0.44	8.5	11	3;14	11	y	0.27	7.0	19	0;14	19	n	0.23	3.0	10	0;6	10	n	0.69	4.5	2	1;8	2	n	0.30	3.5	8	0;7	8	n	0.80	4.0	1	0;8	1	n	0.31	4.0	9	1;7	9	n	0.38	3.0	5	0;6	5	n	0.71	7.5	3	1;14	3	n	ENSMUSG00000025326.13	Ube3a	chr7	protein_coding	ubiquitin protein ligase E3A
known_NIR_17875	chr7	58890781	58896921	+	58893217	58896921	A5SS&ES	ENSMUST00000201409.4	known	0.00	0	6	0	6	n	0.33	1	2	1	2	n	0.00	0	21	0	21	n	0.00	0	14	0	14	n	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.11	1	8	1	8	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.12	2	14	2	14	y	ENSMUSG00000025326.13	Ube3a	chr7	protein_coding	ubiquitin protein ligase E3A
known_NIR_17876	chr7	58890781;58893217	58893098;58896921	+	58890781	58896921	cassetteExon	ENSMUST00000202440.4	known	1.00	4.0	0	2;6	0	n	0.67	2.0	1	2;2	1	n	1.00	15.0	0	9;21	0	n	1.00	11.0	0	8;14	0	n	1.00	11.5	0	9;14	0	n	1.00	5.0	0	4;6	0	n	0.88	7.0	1	6;8	1	n	1.00	7.5	0	8;7	0	n	1.00	4.0	0	0;8	0	n	1.00	6.5	0	6;7	0	n	1.00	5.5	0	5;6	0	n	0.83	10.0	2	6;14	2	y	ENSMUSG00000025326.13	Ube3a	chr7	protein_coding	ubiquitin protein ligase E3A
known_NIR_17877	chr7	58936007	58938154	+	58936007;58936780	58936616;58938154	ES	ENSMUST00000202945.4	known	0.00	0	33.5	0	26;41	n	0.07	2	26.0	2	23;29	y	0.00	0	54.0	0	58;50	n	0.00	0	39.0	0	37;41	n	0.00	0	62.0	0	64;60	n	0.00	0	24.5	0	19;30	n	0.00	0	42.0	0	38;46	n	0.00	0	30.0	0	27;33	n	0.00	0	30.5	0	24;37	n	0.00	0	49.0	0	45;53	n	0.00	0	33.0	0	30;36	n	0.00	0	42.0	0	48;36	n	ENSMUSG00000025326.13	Ube3a	chr7	protein_coding	ubiquitin protein ligase E3A
known_NIR_17878	chr7	6145618	6146061	-	6136170	6146061	A3SS	ENSMUST00000094870.3	known	0.33	16	33	16	33	y	0.69	42	19	42	19	y	0.73	46	17	46	17	y	0.49	19	20	19	20	y	0.58	50	36	50	36	y	0.60	27	18	27	18	y	0.71	68	28	68	28	y	0.69	24	11	24	11	y	0.74	49	17	49	17	y	0.72	70	27	70	27	y	0.73	57	21	57	21	y	0.63	37	22	37	22	y	ENSMUSG00000046792.9	Zfp787	chr7	protein_coding	zinc finger protein 787
known_NIR_17879	chr7	6146149	6158205	-	6146149	6158844	A5SS	ENSMUST00000094870.3	known	0.03	3	98	3	98	y	0.03	2	70	2	70	y	0.03	4	120	4	120	y	0.05	4	84	4	84	y	0.03	4	146	4	146	y	0.06	3	46	3	46	y	0.04	5	122	5	122	y	0.10	7	64	7	64	y	0.05	5	87	5	87	y	0.02	2	113	2	113	y	0.05	5	89	5	89	y	0.05	5	90	5	90	y	ENSMUSG00000046792.9	Zfp787	chr7	protein_coding	zinc finger protein 787
known_NIR_17880	chr7	6175536	6186861	+	6177100	6186861	A5SS&ES	ENSMUST00000128495.8	known	0.00	0	56	0	56	n	0.00	0	40	0	40	n	0.00	0	37	0	37	n	0.00	0	48	0	48	n	0.00	0	50	0	50	n	0.00	0	17	0	17	n	0.02	1	41	1	41	n	0.00	0	17	0	17	n	0.06	2	34	2	34	y	0.00	0	31	0	31	n	0.05	2	35	2	35	y	0.05	2	40	2	40	y	ENSMUSG00000044876.16	Zfp444	chr7	protein_coding	zinc finger protein 444
known_NIR_17881	chr7	6175573	6176981	+	6175398	6176981	A5SS	ENSMUST00000128495.8	known	0.87	13	2	13	2	y	1.00	23	0	23	0	n	1.00	12	0	12	0	n	0.95	18	1	18	1	n	1.00	23	0	23	0	n	1.00	13	0	13	0	n	1.00	21	0	21	0	n	1.00	8	0	8	0	n	1.00	20	0	20	0	n	1.00	14	0	14	0	n	1.00	17	0	17	0	n	0.96	25	1	25	1	n	ENSMUSG00000044876.16	Zfp444	chr7	protein_coding	zinc finger protein 444
known_NIR_17882	chr7	6175573	6176981	+	6175536	6176981	A5SS	ENSMUST00000108567.9	known	1.00	13	0	13	0	n	1.00	23	0	23	0	n	0.92	12	1	12	1	n	1.00	18	0	18	0	n	1.00	23	0	23	0	n	1.00	13	0	13	0	n	0.91	21	2	21	2	y	1.00	8	0	8	0	n	1.00	20	0	20	0	n	1.00	14	0	14	0	n	1.00	17	0	17	0	n	1.00	25	0	25	0	n	ENSMUSG00000044876.16	Zfp444	chr7	protein_coding	zinc finger protein 444
known_NIR_17883	chr7	6175573	6186861	+	6175536	6186861	A5SS	ENSMUST00000207176.2	known	1.00	14	0	14	0	n	1.00	15	0	15	0	n	1.00	11	0	11	0	n	1.00	9	0	9	0	n	1.00	13	0	13	0	n	1.00	9	0	9	0	n	0.94	16	1	16	1	n	1.00	8	0	8	0	n	0.75	6	2	6	2	n	1.00	9	0	9	0	n	0.92	22	2	22	2	y	0.83	10	2	10	2	y	ENSMUSG00000044876.16	Zfp444	chr7	protein_coding	zinc finger protein 444
known_NIR_17884	chr7	6175573	6186861	+	6177100	6186861	A5SS&ES	ENSMUST00000128495.8	known	0.20	14	56	14	56	y	0.27	15	40	15	40	y	0.23	11	37	11	37	y	0.16	9	48	9	48	y	0.21	13	50	13	50	y	0.35	9	17	9	17	y	0.28	16	41	16	41	y	0.32	8	17	8	17	y	0.15	6	34	6	34	y	0.23	9	31	9	31	y	0.39	22	35	22	35	y	0.20	10	40	10	40	y	ENSMUSG00000044876.16	Zfp444	chr7	protein_coding	zinc finger protein 444
known_NIR_17885	chr7	6175573;6177100	6176981;6186861	+	6175573	6186861	cassetteExon	ENSMUST00000054680.12	known	0.71	34.5	14	13;56	14	y	0.68	31.5	15	23;40	15	y	0.69	24.5	11	12;37	11	y	0.79	33.0	9	18;48	9	y	0.74	36.5	13	23;50	13	y	0.62	15.0	9	13;17	9	y	0.66	31.0	16	21;41	16	y	0.61	12.5	8	8;17	8	y	0.82	27.0	6	20;34	6	y	0.71	22.5	9	14;31	9	y	0.54	26.0	22	17;35	22	y	0.76	32.5	10	25;40	10	y	ENSMUSG00000044876.16	Zfp444	chr7	protein_coding	zinc finger protein 444
known_NIR_17886	chr7	6175649	6176981	+	6175573	6176981	A5SS	ENSMUST00000108566.8	known	0.00	0	13	0	13	n	0.00	0	23	0	23	n	0.00	0	12	0	12	n	0.00	0	18	0	18	n	0.04	1	23	1	23	n	0.13	2	13	2	13	y	0.05	1	21	1	21	n	0.00	0	8	0	8	n	0.00	0	20	0	20	n	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.00	0	25	0	25	n	ENSMUSG00000044876.16	Zfp444	chr7	protein_coding	zinc finger protein 444
known_NIR_17887	chr7	6177100	6186789	+	6177100	6186861	A3SS	ENSMUST00000128495.8	known	0.03	2	56	2	56	y	0.00	0	40	0	40	n	0.00	0	37	0	37	n	0.04	2	48	2	48	y	0.07	4	50	4	50	y	0.11	2	17	2	17	y	0.00	0	41	0	41	n	0.00	0	17	0	17	n	0.00	0	34	0	34	n	0.06	2	31	2	31	y	0.03	1	35	1	35	n	0.00	0	40	0	40	n	ENSMUSG00000044876.16	Zfp444	chr7	protein_coding	zinc finger protein 444
known_NIR_17888	chr7	6184499	6186861	+	6175573	6186861	A5SS	ENSMUST00000054680.12	known	0.00	0	14	0	14	n	0.12	2	15	2	15	y	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.19	3	13	3	13	y	0.10	1	9	1	9	n	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	22	0	22	n	0.00	0	10	0	10	n	ENSMUSG00000044876.16	Zfp444	chr7	protein_coding	zinc finger protein 444
known_NIR_17889	chr7	6184499	6186861	+	6177100	6186861	A5SS	ENSMUST00000128495.8	known	0.00	0	56	0	56	n	0.05	2	40	2	40	y	0.00	0	37	0	37	n	0.00	0	48	0	48	n	0.06	3	50	3	50	y	0.06	1	17	1	17	n	0.00	0	41	0	41	n	0.00	0	17	0	17	n	0.00	0	34	0	34	n	0.00	0	31	0	31	n	0.00	0	35	0	35	n	0.00	0	40	0	40	n	ENSMUSG00000044876.16	Zfp444	chr7	protein_coding	zinc finger protein 444
known_NIR_17890	chr7	6187201	6192405	+	6187201	6191133	3pMXE	ENSMUST00000134933.8	known	0.00	0	75	0	75	n	0.06	3	50	3	50	y	0.00	0	36	0	36	n	0.00	0	54	0	54	n	0.05	4	80	4	80	y	0.05	1	21	1	21	n	0.03	2	59	2	59	y	0.00	0	36	0	36	n	0.00	0	45	0	45	n	0.06	4	65	4	65	y	0.00	0	53	0	53	n	0.00	0	47	0	47	n	ENSMUSG00000044876.16	Zfp444	chr7	protein_coding	zinc finger protein 444
known_NIR_17891	chr7	6187201	6192405	+	6187201;6191241	6191133;6192405	ES	ENSMUST00000108567.9	known	0.00	0	65.0	0	75;55	n	0.06	3	47.5	3	50;45	y	0.00	0	34.5	0	36;33	n	0.00	0	49.0	0	54;44	n	0.05	4	70.5	4	80;61	y	0.04	1	26.5	1	21;32	n	0.03	2	59.5	2	59;60	y	0.00	0	36.5	0	36;37	n	0.00	0	40.5	0	45;36	n	0.07	4	52.5	4	65;40	y	0.00	0	50.5	0	53;48	n	0.00	0	44.0	0	47;41	n	ENSMUSG00000044876.16	Zfp444	chr7	protein_coding	zinc finger protein 444
known_NIR_17892	chr7	6296940	6303725	+	6296940	6307587	A3SS	ENSMUST00000086327.12	known	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.17	2	10	2	10	y	0.00	0	2	0	2	n	0.00	0	6	0	6	n	ENSMUSG00000054893.16	Zfp667	chr7	protein_coding	zinc finger protein 667
known_NIR_17893	chr7	63541545	63574418	-	63541545	63587715	A5SS	ENSMUST00000063694.10	known	0.00	0	37	0	37	n	0.11	3	24	3	24	y	0.00	0	8	0	8	n	0.05	2	42	2	42	y	0.02	1	48	1	48	n	0.00	0	9	0	9	n	0.07	3	38	3	38	y	0.05	1	20	1	20	n	0.09	2	21	2	21	y	0.00	0	23	0	23	n	0.00	0	27	0	27	n	0.00	0	23	0	23	n	ENSMUSG00000052040.11	Klf13	chr7	protein_coding	Kruppel-like factor 13
known_NIR_17894	chr7	63541545	63585978	-	63541545	63587715	A5SS	ENSMUST00000063694.10	known	0.12	5	37	5	37	y	0.04	1	24	1	24	n	0.00	0	8	0	8	n	0.12	6	42	6	42	y	0.08	4	48	4	48	y	0.00	0	9	0	9	n	0.05	2	38	2	38	y	0.00	0	20	0	20	n	0.16	4	21	4	21	y	0.15	4	23	4	23	y	0.00	0	27	0	27	n	0.04	1	23	1	23	n	ENSMUSG00000052040.11	Klf13	chr7	protein_coding	Kruppel-like factor 13
known_NIR_17895	chr7	63950430	63963832	+	63950430;63957966	63957876;63963832	ES	ENSMUST00000032736.11	known	0.00	0	25.5	0	18;33	n	0.00	0	15.0	0	11;19	n	0.05	2	38.0	2	37;39	y	0.00	0	35.5	0	32;39	n	0.00	0	38.5	0	38;39	n	0.00	0	23.0	0	22;24	n	0.00	0	37.5	0	34;41	n	0.00	0	28.0	0	32;24	n	0.00	0	17.5	0	21;14	n	0.00	0	37.5	0	40;35	n	0.00	0	18.5	0	21;16	n	0.00	0	25.0	0	23;27	n	ENSMUSG00000030522.15	Mtmr10	chr7	protein_coding	myotubularin related protein 10
known_NIR_17896	chr7	64042591	64049917	+	64042591	64048441	3pMXE	ENSMUST00000206138.2	known	0.97	146	4	146	4	y	0.96	135	5	135	5	y	0.88	52	7	52	7	y	0.98	198	4	198	4	y	0.97	189	6	189	6	y	0.88	45	6	45	6	y	1.00	182	0	182	0	n	0.95	83	4	83	4	y	0.97	161	5	161	5	y	0.98	228	5	228	5	y	0.96	197	8	197	8	y	0.98	203	4	203	4	y	ENSMUSG00000033429.11	Mcee	chr7	protein_coding	methylmalonyl CoA epimerase
known_NIR_17897	chr7	64042591	64061583	+	64042591	64048441	3pMXE	ENSMUST00000206138.2	known	0.71	10	4	10	4	y	0.79	19	5	19	5	y	0.56	9	7	9	7	y	0.85	22	4	22	4	y	0.74	17	6	17	6	y	0.65	11	6	11	6	y	1.00	22	0	22	0	n	0.75	12	4	12	4	y	0.85	28	5	28	5	y	0.84	26	5	26	5	y	0.76	26	8	26	8	y	0.88	29	4	29	4	y	ENSMUSG00000033429.11	Mcee	chr7	protein_coding	methylmalonyl CoA epimerase
known_NIR_17898	chr7	64042591	64061583	+	64042591;64050254	64049917;64061583	ES	ENSMUST00000037205.11	known	0.05	10	193.0	10	146;240	y	0.09	19	197.5	19	135;260	y	0.13	9	61.0	9	52;70	y	0.09	22	218.5	22	198;239	y	0.07	17	223.0	17	189;257	y	0.18	11	50.5	11	45;56	y	0.09	22	233.0	22	182;284	y	0.10	12	102.5	12	83;122	y	0.12	28	214.5	28	161;268	y	0.08	26	291.0	26	228;354	y	0.09	26	249.0	26	197;301	y	0.10	29	266.0	29	203;329	y	ENSMUSG00000033429.11	Mcee	chr7	protein_coding	methylmalonyl CoA epimerase
known_NIR_17899	chr7	64042591;64050092	64049917;64061583	+	64042591	64061583	cassetteExon	ENSMUST00000206882.2	known	0.91	96.0	10	146;46	10	y	0.83	90.0	19	135;45	19	y	0.78	31.5	9	52;11	9	y	0.84	119.0	22	198;40	22	y	0.87	112.0	17	189;35	17	y	0.71	27.0	11	45;9	11	y	0.85	121.0	22	182;60	22	y	0.81	51.5	12	83;20	12	y	0.78	99.0	28	161;37	28	y	0.84	139.5	26	228;51	26	y	0.82	117.5	26	197;38	26	y	0.81	123.0	29	203;43	29	y	ENSMUSG00000033429.11	Mcee	chr7	protein_coding	methylmalonyl CoA epimerase
known_NIR_17900	chr7	64050092	64061583	+	64050254	64061583	A5SS	ENSMUST00000037205.11	known	0.16	46	240	46	240	y	0.15	45	260	45	260	y	0.14	11	70	11	70	y	0.14	40	239	40	239	y	0.12	35	257	35	257	y	0.14	9	56	9	56	y	0.17	60	284	60	284	y	0.14	20	122	20	122	y	0.12	37	268	37	268	y	0.13	51	354	51	354	y	0.11	38	301	38	301	y	0.12	43	329	43	329	y	ENSMUSG00000033429.11	Mcee	chr7	protein_coding	methylmalonyl CoA epimerase
known_NIR_17901	chr7	64947415	64949418	-	64947415	64949478	A5SS	ENSMUST00000102592.10	known	0.22	8	28	8	28	y	0.36	10	18	10	18	y	0.22	12	43	12	43	y	0.43	20	26	20	26	y	0.36	15	27	15	27	y	0.34	10	19	10	19	y	0.39	16	25	16	25	y	0.42	11	15	11	15	y	0.30	7	16	7	16	y	0.36	19	34	19	34	y	0.28	9	23	9	23	y	0.46	25	29	25	29	y	ENSMUSG00000030516.15	Tjp1	chr7	protein_coding	tight junction protein 1
known_NIR_17902	chr7	64947415	64949457	-	64947415	64949418	A5SS	ENSMUST00000032729.8	known	0.43	6	8	6	8	y	0.44	8	10	8	10	y	0.50	12	12	12	12	y	0.51	21	20	21	20	y	0.56	19	15	19	15	y	0.50	10	10	10	10	y	0.53	18	16	18	16	y	0.39	7	11	7	11	y	0.63	12	7	12	7	y	0.53	21	19	21	19	y	0.40	6	9	6	9	y	0.46	21	25	21	25	y	ENSMUSG00000030516.15	Tjp1	chr7	protein_coding	tight junction protein 1
known_NIR_17903	chr7	64947415	64949457	-	64947415	64949478	A5SS	ENSMUST00000102592.10	known	0.18	6	28	6	28	y	0.31	8	18	8	18	y	0.22	12	43	12	43	y	0.45	21	26	21	26	y	0.41	19	27	19	27	y	0.34	10	19	10	19	y	0.42	18	25	18	25	y	0.32	7	15	7	15	y	0.43	12	16	12	16	y	0.38	21	34	21	34	y	0.21	6	23	6	23	y	0.42	21	29	21	29	y	ENSMUSG00000030516.15	Tjp1	chr7	protein_coding	tight junction protein 1
known_NIR_17904	chr7	64963172	64964407	-	64963172;64964080	64963841;64964407	ES	ENSMUST00000102592.10	known	0.19	3	13.0	3	13;13	y	0.14	2	12.5	2	9;16	y	0.30	7	16.5	7	18;15	y	0.09	3	29.0	3	22;36	y	0.04	1	27.0	1	24;30	n	0.29	5	12.0	5	11;13	y	0.31	4	9.0	4	12;6	y	0.00	0	17.5	0	18;17	n	0.22	2	7.0	2	8;6	y	0.16	4	21.0	4	24;18	y	0.09	1	10.0	1	9;11	n	0.21	5	19.0	5	18;20	y	ENSMUSG00000030516.15	Tjp1	chr7	protein_coding	tight junction protein 1
known_NIR_17905	chr7	65336290	65339716	+	65336290;65338699	65338627;65339716	ES	ENSMUST00000032728.9	known	0.00	0	23.0	0	18;28	n	0.00	0	19.0	0	16;22	n	0.00	0	14.0	0	9;19	n	0.00	0	29.5	0	27;32	n	0.07	2	28.0	2	28;28	y	0.00	0	9.5	0	7;12	n	0.04	1	25.5	1	21;30	n	0.00	0	7.5	0	6;9	n	0.00	0	16.5	0	16;17	n	0.00	0	36.0	0	30;42	n	0.00	0	32.5	0	26;39	n	0.00	0	38.5	0	36;41	n	ENSMUSG00000030515.10	Tarsl2	chr7	protein_coding	threonyl-tRNA synthetase-like 2
known_NIR_17906	chr7	65343317	65343614	+	65343317	65343599	A3SS	ENSMUST00000065574.9	known	0.00	0	23	0	23	n	0.00	0	24	0	24	n	0.10	1	9	1	9	n	0.12	3	21	3	21	y	0.00	0	19	0	19	n	0.09	1	10	1	10	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.00	0	20	0	20	n	0.00	0	15	0	15	n	0.00	0	8	0	8	n	0.00	0	28	0	28	n	ENSMUSG00000078681.11	Tm2d3	chr7	protein_coding	TM2 domain containing 3
known_NIR_17907	chr7	65343317	65344891	+	65343317	65343599	A3SS&ES	ENSMUST00000206517.2	known	0.79	87	23	87	23	y	0.76	75	24	75	24	y	0.93	112	9	112	9	y	0.77	72	21	72	21	y	0.87	123	19	123	19	y	0.82	46	10	46	10	y	0.87	105	16	105	16	y	0.91	61	6	61	6	y	0.80	82	20	82	20	y	0.89	122	15	122	15	y	0.90	73	8	73	8	y	0.81	123	28	123	28	y	ENSMUSG00000078681.11	Tm2d3	chr7	protein_coding	TM2 domain containing 3
known_NIR_17908	chr7	65343317	65344891	+	65343317	65343614	A3SS&ES	ENSMUST00000206628.2	known	1.00	87	0	87	0	n	1.00	75	0	75	0	n	0.99	112	1	112	1	n	0.96	72	3	72	3	y	1.00	123	0	123	0	n	0.98	46	1	46	1	n	1.00	105	0	105	0	n	1.00	61	0	61	0	n	1.00	82	0	82	0	n	1.00	122	0	122	0	n	1.00	73	0	73	0	n	1.00	123	0	123	0	n	ENSMUSG00000078681.11	Tm2d3	chr7	protein_coding	TM2 domain containing 3
known_NIR_17909	chr7	65343317	65344891	+	65343317;65343691	65343599;65344891	ES	ENSMUST00000065574.9	known	0.83	87	17.5	87	23;12	y	0.78	75	21.5	75	24;19	y	0.90	112	12.0	112	9;15	y	0.77	72	21.0	72	21;21	y	0.84	123	23.5	123	19;28	y	0.79	46	12.0	46	10;14	y	0.86	105	16.5	105	16;17	y	0.85	61	11.0	61	6;16	y	0.77	82	24.0	82	20;28	y	0.86	122	19.5	122	15;24	y	0.83	73	15.0	73	8;22	y	0.83	123	25.0	123	28;22	y	ENSMUSG00000078681.11	Tm2d3	chr7	protein_coding	TM2 domain containing 3
known_NIR_17910	chr7	65343317	65344918	+	65343317	65343599	A3SS&ES	ENSMUST00000065574.9	known	0.34	12	23	12	23	y	0.44	19	24	19	24	y	0.61	14	9	14	9	y	0.45	17	21	17	21	y	0.53	21	19	21	19	y	0.38	6	10	6	10	y	0.56	20	16	20	16	y	0.45	5	6	5	6	y	0.31	9	20	9	20	y	0.53	17	15	17	15	y	0.65	15	8	15	8	y	0.40	19	28	19	28	y	ENSMUSG00000078681.11	Tm2d3	chr7	protein_coding	TM2 domain containing 3
known_NIR_17911	chr7	65343317	65344918	+	65343317	65343614	A3SS&ES	ENSMUST00000206837.2	known	1.00	12	0	12	0	n	1.00	19	0	19	0	n	0.93	14	1	14	1	n	0.85	17	3	17	3	y	1.00	21	0	21	0	n	0.86	6	1	6	1	n	1.00	20	0	20	0	n	1.00	5	0	5	0	n	1.00	9	0	9	0	n	1.00	17	0	17	0	n	1.00	15	0	15	0	n	1.00	19	0	19	0	n	ENSMUSG00000078681.11	Tm2d3	chr7	protein_coding	TM2 domain containing 3
known_NIR_17912	chr7	65343317	65344918	+	65343317	65344891	A3SS	ENSMUST00000032726.14	known	0.12	12	87	12	87	y	0.20	19	75	19	75	y	0.11	14	112	14	112	y	0.19	17	72	17	72	y	0.15	21	123	21	123	y	0.12	6	46	6	46	y	0.16	20	105	20	105	y	0.08	5	61	5	61	y	0.10	9	82	9	82	y	0.12	17	122	17	122	y	0.17	15	73	15	73	y	0.13	19	123	19	123	y	ENSMUSG00000078681.11	Tm2d3	chr7	protein_coding	TM2 domain containing 3
known_NIR_17913	chr7	65343317;65343691	65343599;65344918	+	65343317	65344918	cassetteExon	ENSMUST00000143508.3	known	0.54	14.0	12	23;5	12	y	0.48	17.5	19	24;11	19	y	0.35	7.5	14	9;6	14	y	0.46	14.5	17	21;8	17	y	0.39	13.5	21	19;8	21	y	0.56	7.5	6	10;5	6	y	0.29	8.0	20	16;0	20	n	0.38	3.0	5	6;0	5	n	0.60	13.5	9	20;7	9	y	0.46	14.5	17	15;14	17	y	0.39	9.5	15	8;11	15	y	0.47	17.0	19	28;6	19	y	ENSMUSG00000078681.11	Tm2d3	chr7	protein_coding	TM2 domain containing 3
known_NIR_17914	chr7	65343317;65343691	65343614;65344891	+	65343317	65344891	cassetteExon	ENSMUST00000032726.14	known	0.06	6.0	87	0;12	87	n	0.11	9.5	75	0;19	75	n	0.07	8.0	112	1;15	112	n	0.14	12.0	72	3;21	72	y	0.10	14.0	123	0;28	123	n	0.14	7.5	46	1;14	46	n	0.07	8.5	105	0;17	105	n	0.12	8.0	61	0;16	61	n	0.15	14.0	82	0;28	82	n	0.09	12.0	122	0;24	122	n	0.13	11.0	73	0;22	73	n	0.08	11.0	123	0;22	123	n	ENSMUSG00000078681.11	Tm2d3	chr7	protein_coding	TM2 domain containing 3
known_NIR_17915	chr7	65343317;65343691	65343614;65344918	+	65343317	65344918	cassetteExon	ENSMUST00000143508.3	known	0.17	2.5	12	0;5	12	n	0.22	5.5	19	0;11	19	n	0.20	3.5	14	1;6	14	n	0.24	5.5	17	3;8	17	y	0.16	4.0	21	0;8	21	n	0.33	3.0	6	1;5	6	n	0.00	0.0	20	0;0	20	n	0.00	0.0	5	0;0	5	n	0.28	3.5	9	0;7	9	n	0.29	7.0	17	0;14	17	n	0.27	5.5	15	0;11	15	n	0.14	3.0	19	0;6	19	n	ENSMUSG00000078681.11	Tm2d3	chr7	protein_coding	TM2 domain containing 3
known_NIR_17916	chr7	65343691	65344918	+	65343691	65344891	A3SS	ENSMUST00000065574.9	known	0.29	5	12	5	12	y	0.37	11	19	11	19	y	0.29	6	15	6	15	y	0.28	8	21	8	21	y	0.22	8	28	8	28	y	0.26	5	14	5	14	y	0.00	0	17	0	17	n	0.00	0	16	0	16	n	0.20	7	28	7	28	y	0.37	14	24	14	24	y	0.33	11	22	11	22	y	0.21	6	22	6	22	y	ENSMUSG00000078681.11	Tm2d3	chr7	protein_coding	TM2 domain containing 3
known_NIR_17917	chr7	65512191	65559950	+	65511514	65559950	A5SS	ENSMUST00000176199.8	known	0.95	41	2	41	2	y	1.00	20	0	20	0	n	1.00	45	0	45	0	n	0.97	65	2	65	2	y	1.00	62	0	62	0	n	0.95	20	1	20	1	n	0.99	67	1	67	1	n	0.96	24	1	24	1	n	1.00	36	0	36	0	n	1.00	78	0	78	0	n	0.98	48	1	48	1	n	1.00	42	0	42	0	n	ENSMUSG00000030513.15	Pcsk6	chr7	protein_coding	proprotein convertase subtilisin/kexin type 6
known_NIR_17918	chr7	65612752	65618716	+	65612752	65629895	A3SS	ENSMUST00000176209.2	known	1.00	82	0	82	0	n	1.00	71	0	71	0	n	0.98	82	2	82	2	y	1.00	153	0	153	0	n	1.00	129	0	129	0	n	1.00	51	0	51	0	n	1.00	148	0	148	0	n	1.00	69	0	69	0	n	1.00	103	0	103	0	n	1.00	219	0	219	0	n	0.99	104	1	104	1	n	1.00	112	0	112	0	n	ENSMUSG00000030513.15	Pcsk6	chr7	protein_coding	proprotein convertase subtilisin/kexin type 6
known_NIR_17919	chr7	65620407	65629895	+	65612752	65629895	A5SS	ENSMUST00000176209.2	known	1.00	94	0	94	0	n	1.00	82	0	82	0	n	0.98	85	2	85	2	y	1.00	154	0	154	0	n	1.00	125	0	125	0	n	1.00	51	0	51	0	n	1.00	195	0	195	0	n	1.00	87	0	87	0	n	1.00	113	0	113	0	n	1.00	282	0	282	0	n	0.99	143	1	143	1	n	1.00	122	0	122	0	n	ENSMUSG00000030513.15	Pcsk6	chr7	protein_coding	proprotein convertase subtilisin/kexin type 6
known_NIR_17920	chr7	65675155	65681497	+	65675155;65675352	65675314;65681497	ES	ENSMUST00000055576.12	known	0.01	1	111.5	1	116;107	n	0.00	0	97.5	0	101;94	n	0.04	3	72.5	3	74;71	y	0.01	2	140.5	2	146;135	y	0.01	2	134.0	2	132;136	y	0.00	0	43.5	0	41;46	n	0.01	2	158.0	2	163;153	y	0.04	2	51.0	2	59;43	y	0.00	0	77.5	0	75;80	n	0.01	1	197.5	1	206;189	n	0.00	0	121.5	0	123;120	n	0.00	0	103.0	0	101;105	n	ENSMUSG00000030513.15	Pcsk6	chr7	protein_coding	proprotein convertase subtilisin/kexin type 6
known_NIR_17921	chr7	65710743	65711872	+	65710440	65711872	A5SS	ENSMUST00000153609.8	known	0.00	0	51	0	51	n	0.00	0	51	0	51	n	0.00	0	38	0	38	n	0.00	0	60	0	60	n	0.03	2	63	2	63	y	0.00	0	26	0	26	n	0.00	0	24	0	24	n	0.00	0	22	0	22	n	0.00	0	49	0	49	n	0.00	0	56	0	56	n	0.00	0	50	0	50	n	0.02	1	60	1	60	n	ENSMUSG00000030512.14	Snrpa1	chr7	protein_coding	small nuclear ribonucleoprotein polypeptide A'
known_NIR_17922	chr7	65719274;65719946	65719867;65720338	+	65719274	65720338	cassetteExon	ENSMUST00000206150.2	known	0.77	54.0	16	49;59	16	y	0.87	55.0	8	54;56	8	y	0.86	48.5	8	47;50	8	y	0.83	52.0	11	55;49	11	y	0.85	64.0	11	55;73	11	y	0.93	25.0	2	31;19	2	y	0.83	71.0	15	85;57	15	y	0.75	24.0	8	25;23	8	y	0.72	46.5	18	52;41	18	y	0.66	51.5	26	55;48	26	y	0.76	44.5	14	36;53	14	y	0.71	59.0	24	60;58	24	y	ENSMUSG00000030512.14	Snrpa1	chr7	protein_coding	small nuclear ribonucleoprotein polypeptide A'
known_NIR_17923	chr7	65729566	65730080	+	65729537	65730080	A5SS	ENSMUST00000101801.8	known	0.00	0	278	0	278	n	0.00	0	259	0	259	n	0.01	6	581	6	581	y	0.01	3	275	3	275	y	0.00	1	470	1	470	n	0.01	2	328	2	328	y	0.01	2	342	2	342	y	0.00	0	290	0	290	n	0.00	0	189	0	189	n	0.00	1	281	1	281	n	0.01	2	254	2	254	y	0.00	0	318	0	318	n	ENSMUSG00000075701.11	Selenos	chr7	protein_coding	selenoprotein S
known_NIR_17924	chr7	65737016	65738515	+	65737019	65738515	A5SS	ENSMUST00000101801.8	known	0.04	12	320	12	320	y	0.07	27	341	27	341	y	0.04	21	562	21	562	y	0.06	18	283	18	283	y	0.06	27	457	27	457	y	0.06	22	319	22	319	y	0.05	17	349	17	349	y	0.06	19	299	19	299	y	0.03	8	229	8	229	y	0.04	12	298	12	298	y	0.06	17	279	17	279	y	0.03	13	375	13	375	y	ENSMUSG00000075701.11	Selenos	chr7	protein_coding	selenoprotein S
known_NIR_17925	chr7	66310003	66328828	-	66310003;66327993	66327905;66328828	ES	ENSMUST00000131320.8	known	0.00	0	1.0	0	1;1	n	0.25	1	3.0	1	1;5	n	0.48	5	5.5	5	8;3	y	0.44	6	7.5	6	6;9	y	0.45	7	8.5	7	6;11	y	0.29	1	2.5	1	2;3	n	0.31	2	4.5	2	4;5	y	0.21	2	7.5	2	4;11	y	0.61	7	4.5	7	2;7	y	0.62	8	5.0	8	4;6	y	0.31	2	4.5	2	1;8	n	0.24	3	9.5	3	9;10	y	ENSMUSG00000030509.18	Asb7	chr7	protein_coding	ankyrin repeat and SOCS box-containing 7
known_NIR_17926	chr7	66310003	66328828	-	66327993	66328828	3pMXE	ENSMUST00000068980.4	known	0.00	0	1	0	1	n	0.17	1	5	1	5	n	0.62	5	3	5	3	n	0.40	6	9	6	9	y	0.39	7	11	7	11	y	0.25	1	3	1	3	n	0.29	2	5	2	5	n	0.15	2	11	2	11	y	0.50	7	7	7	7	y	0.57	8	6	8	6	y	0.20	2	8	2	8	y	0.23	3	10	3	10	y	ENSMUSG00000030509.18	Asb7	chr7	protein_coding	ankyrin repeat and SOCS box-containing 7
known_NIR_17927	chr7	66331556;66337706	66337632;66338571	-	66331556	66338571	cassetteExon	ENSMUST00000131320.8	known	0.00	0.0	1	0;0	1	n	0.00	0.0	3	0;0	3	n	0.24	4.0	13	2;6	13	y	0.11	1.5	12	2;1	12	n	0.22	2.0	7	2;2	7	y	0.04	0.5	11	0;1	11	n	0.24	3.5	11	3;4	11	y	0.04	0.5	11	1;0	11	n	0.11	0.5	4	1;0	4	n	0.26	3.5	10	1;6	10	n	0.11	1.0	8	0;2	8	n	0.09	1.0	10	1;1	10	n	ENSMUSG00000030509.18	Asb7	chr7	protein_coding	ankyrin repeat and SOCS box-containing 7
known_NIR_17928	chr7	66346054;66356872	66356773;66357788	+	66346054	66357788	cassetteExon	ENSMUST00000121777.9	known	0.00	0.0	7	0;0	7	n	0.20	0.5	2	1;0	2	n	0.00	0.0	9	0;0	9	n	0.00	0.0	7	0;0	7	n	0.20	2.0	8	2;2	8	y	0.00	0.0	2	0;0	2	n	0.20	1.0	4	2;0	4	n	0.00	0.0	6	0;0	6	n	0.00	0.0	5	0;0	5	n	0.14	0.5	3	0;1	3	n	0.00	0.0	5	0;0	5	n	0.00	0.0	5	0;0	5	n	ENSMUSG00000053091.17	Lins1	chr7	protein_coding	lines homolog 1
known_NIR_17929	chr7	66359183	66359978	+	66359183	66359907	A3SS	ENSMUST00000121777.9	known	0.62	5	3	5	3	n	0.80	4	1	4	1	n	0.50	7	7	7	7	y	0.67	2	1	2	1	n	0.67	2	1	2	1	n	0.40	2	3	2	3	n	0.50	3	3	3	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	1.00	3	0	3	0	n	1.00	3	0	3	0	n	1.00	6	0	6	0	n	ENSMUSG00000053091.17	Lins1	chr7	protein_coding	lines homolog 1
known_NIR_17930	chr7	66872377	66873357	+	66872786	66873357	A5SS	ENSMUST00000208998.2	known	0.67	6	3	6	3	n	0.83	5	1	5	1	n	0.67	4	2	4	2	n	0.57	4	3	4	3	n	0.31	4	9	4	9	y	0.29	2	5	2	5	n	0.30	3	7	3	7	y	0.33	4	8	4	8	y	0.00	0	1	0	1	n	0.58	7	5	7	5	y	0.88	7	1	7	1	n	1.00	6	0	6	0	n	ENSMUSG00000043831.13	Lysmd4	chr7	protein_coding	LysM, putative peptidoglycan-binding, domain containing 4
known_NIR_17931	chr7	66873639	66875612	+	66873639	66874124	3pMXE	ENSMUST00000207757.2	known	0.91	20	2	20	2	y	1.00	9	0	9	0	n	0.92	23	2	23	2	y	0.95	18	1	18	1	n	0.86	19	3	19	3	y	1.00	14	0	14	0	n	0.71	17	7	17	7	y	0.95	18	1	18	1	n	0.80	8	2	8	2	y	0.84	16	3	16	3	y	0.89	8	1	8	1	n	1.00	12	0	12	0	n	ENSMUSG00000043831.13	Lysmd4	chr7	protein_coding	LysM, putative peptidoglycan-binding, domain containing 4
known_NIR_17932	chr7	66873639;66874149	66874124;66875612	+	66873639	66875612	cassetteExon	ENSMUST00000058771.13	known	0.05	1.0	20	2;0	20	n	0.00	0.0	9	0;0	9	n	0.04	1.0	23	2;0	23	n	0.03	0.5	18	1;0	18	n	0.14	3.0	19	3;3	19	y	0.00	0.0	14	0;0	14	n	0.17	3.5	17	7;0	17	n	0.08	1.5	18	1;2	18	n	0.11	1.0	8	2;0	8	n	0.09	1.5	16	3;0	16	n	0.06	0.5	8	1;0	8	n	0.04	0.5	12	0;1	12	n	ENSMUSG00000043831.13	Lysmd4	chr7	protein_coding	LysM, putative peptidoglycan-binding, domain containing 4
known_NIR_17933	chr7	66890188	66901405	-	66890188;66894292	66894269;66901405	ES	ENSMUST00000156690.8	known	1.00	14	0.0	14	0;0	n	0.94	15	1.0	15	2;0	n	0.93	31	2.5	31	3;2	y	1.00	15	0.0	15	0;0	n	1.00	24	0.0	24	0;0	n	0.94	16	1.0	16	0;2	n	0.80	14	3.5	14	3;4	y	1.00	22	0.0	22	0;0	n	1.00	11	0.0	11	0;0	n	1.00	16	0.0	16	0;0	n	0.97	14	0.5	14	1;0	n	1.00	30	0.0	30	0;0	n	ENSMUSG00000030557.18	Mef2a	chr7	protein_coding	myocyte enhancer factor 2A
known_NIR_17934	chr7	66915910	66918017	-	66915910	66917815	A5SS	ENSMUST00000207794.2	known	0.64	9	5	9	5	y	0.38	3	5	3	5	n	0.60	18	12	18	12	y	0.43	12	16	12	16	y	0.77	17	5	17	5	y	0.39	7	11	7	11	y	0.37	7	12	7	12	y	0.43	6	8	6	8	y	0.44	4	5	4	5	n	0.78	7	2	7	2	n	0.64	7	4	7	4	y	0.47	9	10	9	10	y	ENSMUSG00000030557.18	Mef2a	chr7	protein_coding	myocyte enhancer factor 2A
known_NIR_17935	chr7	66915910;66917952	66917815;66945123	-	66915910;66918148	66918017;66945123	MXE	ENSMUST00000156690.8	known	0.38	4.0	6.5	5;3	9;4	y	0.58	3.5	2.5	5;2	3;2	y	0.40	11.5	17.5	12;11	18;17	y	0.55	15.0	12.5	16;14	12;13	y	0.29	6.0	15.0	5;7	17;13	y	0.48	6.5	7.0	11;2	7;7	y	0.45	10.0	12.0	12;8	7;17	y	0.47	8.0	9.0	8;8	6;12	y	0.54	3.5	3.0	5;2	4;2	y	0.33	3.5	7.0	2;5	7;7	y	0.36	4.0	7.0	4;4	7;7	y	0.54	10.0	8.5	10;10	9;8	y	ENSMUSG00000030557.18	Mef2a	chr7	protein_coding	myocyte enhancer factor 2A
known_NIR_17936	chr7	66917952	66945123	-	66918148	66945123	A3SS	ENSMUST00000207486.2	known	0.43	3	4	3	4	n	0.50	2	2	2	2	n	0.39	11	17	11	17	y	0.52	14	13	14	13	y	0.35	7	13	7	13	y	0.22	2	7	2	7	n	0.32	8	17	8	17	y	0.40	8	12	8	12	y	0.50	2	2	2	2	n	0.42	5	7	5	7	y	0.36	4	7	4	7	y	0.56	10	8	10	8	y	ENSMUSG00000030557.18	Mef2a	chr7	protein_coding	myocyte enhancer factor 2A
known_NIR_17937	chr7	66966730	66999597	-	66966730	66999617	A5SS	ENSMUST00000156690.8	known	0.50	2	2	2	2	n	0.00	0	4	0	4	n	0.17	5	24	5	24	y	0.00	0	8	0	8	n	0.12	1	7	1	7	n	0.07	1	13	1	13	n	0.35	6	11	6	11	y	0.40	6	9	6	9	y	0.25	2	6	2	6	n	0.47	7	8	7	8	y	0.27	3	8	3	8	y	0.25	3	9	3	9	y	ENSMUSG00000030557.18	Mef2a	chr7	protein_coding	myocyte enhancer factor 2A
known_NIR_17938	chr7	67181538;67195216	67195114;67267741	-	67181538	67267741	cassetteExon	ENSMUST00000190770.7	known	0.97	38.0	1	72;4	1	n	1.00	29.5	0	53;6	0	n	1.00	38.0	0	68;8	0	n	1.00	40.0	0	73;7	0	n	1.00	34.0	0	67;1	0	n	1.00	17.5	0	33;2	0	n	0.96	42.5	2	78;7	2	y	1.00	24.0	0	39;9	0	n	1.00	28.0	0	54;2	0	n	1.00	48.0	0	93;3	0	n	1.00	33.0	0	64;2	0	n	1.00	29.5	0	55;4	0	n	ENSMUSG00000030556.14	Lrrc28	chr7	protein_coding	leucine rich repeat containing 28
known_NIR_17939	chr7	67195216	67267741	-	67195216;67209717	67209606;67267741	ES	ENSMUST00000187953.8	known	0.09	4	43.0	4	53;33	y	0.14	6	36.5	6	42;31	y	0.14	8	48.5	8	79;18	y	0.12	7	52.0	7	55;49	y	0.03	1	39.0	1	47;31	n	0.10	2	18.0	2	23;13	y	0.13	7	48.0	7	64;32	y	0.26	9	25.0	9	35;15	y	0.08	2	22.5	2	32;13	y	0.05	3	62.5	3	77;48	y	0.05	2	35.0	2	43;27	y	0.10	4	37.5	4	45;30	y	ENSMUSG00000030556.14	Lrrc28	chr7	protein_coding	leucine rich repeat containing 28
known_NIR_17940	chr7	67195216	67267741	-	67195216;67209812	67209606;67267741	ES	ENSMUST00000053950.10	known	0.10	4	35.5	4	53;18	y	0.17	6	30.0	6	42;18	y	0.13	8	52.5	8	79;26	y	0.16	7	37.5	7	55;20	y	0.03	1	37.5	1	47;28	n	0.11	2	16.0	2	23;9	y	0.14	7	43.0	7	64;22	y	0.28	9	23.0	9	35;11	y	0.08	2	22.5	2	32;13	y	0.06	3	49.5	3	77;22	y	0.06	2	29.0	2	43;15	y	0.13	4	27.5	4	45;10	y	ENSMUSG00000030556.14	Lrrc28	chr7	protein_coding	leucine rich repeat containing 28
known_NIR_17941	chr7	67209717	67267741	-	67181538	67267741	A3SS	ENSMUST00000190770.7	known	0.97	33	1	33	1	n	1.00	31	0	31	0	n	1.00	18	0	18	0	n	1.00	49	0	49	0	n	1.00	31	0	31	0	n	1.00	13	0	13	0	n	0.94	32	2	32	2	y	1.00	15	0	15	0	n	1.00	13	0	13	0	n	1.00	48	0	48	0	n	1.00	27	0	27	0	n	1.00	30	0	30	0	n	ENSMUSG00000030556.14	Lrrc28	chr7	protein_coding	leucine rich repeat containing 28
known_NIR_17942	chr7	67209717	67267741	-	67209812	67267741	A3SS	ENSMUST00000053950.10	known	0.65	33	18	33	18	y	0.63	31	18	31	18	y	0.41	18	26	18	26	y	0.71	49	20	49	20	y	0.53	31	28	31	28	y	0.59	13	9	13	9	y	0.59	32	22	32	22	y	0.58	15	11	15	11	y	0.50	13	13	13	13	y	0.69	48	22	48	22	y	0.64	27	15	27	15	y	0.75	30	10	30	10	y	ENSMUSG00000030556.14	Lrrc28	chr7	protein_coding	leucine rich repeat containing 28
known_NIR_17943	chr7	67209812	67229438	-	67209812	67267741	A5SS	ENSMUST00000053950.10	known	0.00	0	18	0	18	n	0.05	1	18	1	18	n	0.04	1	26	1	26	n	0.00	0	20	0	20	n	0.00	0	28	0	28	n	0.10	1	9	1	9	n	0.08	2	22	2	22	y	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.00	0	22	0	22	n	0.00	0	15	0	15	n	0.09	1	10	1	10	n	ENSMUSG00000030556.14	Lrrc28	chr7	protein_coding	leucine rich repeat containing 28
known_NIR_17944	chr7	67209812	67267741	-	67181538	67267741	A3SS	ENSMUST00000190770.7	known	0.95	18	1	18	1	n	1.00	18	0	18	0	n	1.00	26	0	26	0	n	1.00	20	0	20	0	n	1.00	28	0	28	0	n	1.00	9	0	9	0	n	0.92	22	2	22	2	y	1.00	11	0	11	0	n	1.00	13	0	13	0	n	1.00	22	0	22	0	n	1.00	15	0	15	0	n	1.00	10	0	10	0	n	ENSMUSG00000030556.14	Lrrc28	chr7	protein_coding	leucine rich repeat containing 28
known_NIR_17945	chr7	67245479	67267741	-	67181538	67267741	A3SS	ENSMUST00000190770.7	known	0.80	4	1	4	1	n	1.00	2	0	2	0	n	1.00	26	0	26	0	n	1.00	11	0	11	0	n	1.00	11	0	11	0	n	1.00	16	0	16	0	n	0.85	11	2	11	2	y	1.00	4	0	4	0	n	-	-	-	-	-	-	1.00	7	0	7	0	n	1.00	11	0	11	0	n	1.00	17	0	17	0	n	ENSMUSG00000030556.14	Lrrc28	chr7	protein_coding	leucine rich repeat containing 28
known_NIR_17946	chr7	67245479	67267741	-	67195216	67267741	A3SS	ENSMUST00000190276.7	known	0.50	4	4	4	4	n	0.25	2	6	2	6	n	0.76	26	8	26	8	y	0.61	11	7	11	7	y	0.92	11	1	11	1	n	0.89	16	2	16	2	y	0.61	11	7	11	7	y	0.31	4	9	4	9	y	0.00	0	2	0	2	n	0.70	7	3	7	3	y	0.85	11	2	11	2	y	0.81	17	4	17	4	y	ENSMUSG00000030556.14	Lrrc28	chr7	protein_coding	leucine rich repeat containing 28
known_NIR_17947	chr7	67245479	67267741	-	67209717	67267741	A3SS	ENSMUST00000187953.8	known	0.11	4	33	4	33	y	0.06	2	31	2	31	y	0.59	26	18	26	18	y	0.18	11	49	11	49	y	0.26	11	31	11	31	y	0.55	16	13	16	13	y	0.26	11	32	11	32	y	0.21	4	15	4	15	y	0.00	0	13	0	13	n	0.13	7	48	7	48	y	0.29	11	27	11	27	y	0.36	17	30	17	30	y	ENSMUSG00000030556.14	Lrrc28	chr7	protein_coding	leucine rich repeat containing 28
known_NIR_17948	chr7	67245479	67267741	-	67209812	67267741	A3SS	ENSMUST00000053950.10	known	0.18	4	18	4	18	y	0.10	2	18	2	18	y	0.50	26	26	26	26	y	0.35	11	20	11	20	y	0.28	11	28	11	28	y	0.64	16	9	16	9	y	0.33	11	22	11	22	y	0.27	4	11	4	11	y	0.00	0	13	0	13	n	0.24	7	22	7	22	y	0.42	11	15	11	15	y	0.63	17	10	17	10	y	ENSMUSG00000030556.14	Lrrc28	chr7	protein_coding	leucine rich repeat containing 28
known_NIR_17949	chr7	67268859	67290852	-	67268859;67278083	67278043;67290852	ES	ENSMUST00000053950.10	known	0.01	1	75.5	1	73;78	n	0.08	4	48.5	4	50;47	y	0.02	2	80.0	2	88;72	y	0.01	1	75.5	1	72;79	n	0.00	0	89.5	0	93;86	n	0.08	3	34.5	3	33;36	y	0.04	3	71.5	3	67;76	y	0.02	1	39.5	1	39;40	n	0.02	1	47.0	1	42;52	n	0.05	3	63.0	3	61;65	y	0.03	2	56.5	2	56;57	y	0.00	0	73.0	0	72;74	n	ENSMUSG00000030556.14	Lrrc28	chr7	protein_coding	leucine rich repeat containing 28
known_NIR_17950	chr7	67268859;67272345	67272319;67278043	-	67268859	67278043	cassetteExon	ENSMUST00000053950.10	known	0.00	0.0	73	0;0	73	n	0.05	2.5	50	2;3	50	y	0.02	2.0	88	2;2	88	y	0.00	0.0	72	0;0	72	n	0.00	0.0	93	0;0	93	n	0.06	2.0	33	2;2	33	y	0.02	1.5	67	1;2	67	n	0.00	0.0	39	0;0	39	n	0.00	0.0	42	0;0	42	n	0.01	0.5	61	0;1	61	n	0.01	0.5	56	1;0	56	n	0.00	0.0	72	0;0	72	n	ENSMUSG00000030556.14	Lrrc28	chr7	protein_coding	leucine rich repeat containing 28
known_NIR_17951	chr7	67297593	67301671	+	67297593	67312075	A3SS	ENSMUST00000133710.8	known	-	-	-	-	-	-	0.33	2	4	2	4	n	0.22	2	7	2	7	n	0.29	2	5	2	5	n	0.19	3	13	3	13	y	0.00	0	6	0	6	n	0.40	2	3	2	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.17	2	10	2	10	y	0.00	0	9	0	9	n	0.00	0	7	0	7	n	ENSMUSG00000030555.17	Ttc23	chr7	protein_coding	tetratricopeptide repeat domain 23
known_NIR_17952	chr7	67297593	67301671	+	67297593	67316911	A3SS	ENSMUST00000126093.8	known	0.00	0	8	0	8	n	0.25	2	6	2	6	n	0.29	2	5	2	5	n	0.20	2	8	2	8	y	0.27	3	8	3	8	y	0.00	0	5	0	5	n	0.22	2	7	2	7	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.25	2	6	2	6	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000030555.17	Ttc23	chr7	protein_coding	tetratricopeptide repeat domain 23
known_NIR_17953	chr7	67297593	67316911	+	67297593;67312274	67312075;67316911	ES	ENSMUST00000133710.8	known	0.21	8	29.5	8	0;59	n	0.18	6	28.0	6	4;52	y	0.27	5	13.5	5	7;20	y	0.16	8	40.5	8	5;76	y	0.17	8	40.0	8	13;67	y	0.26	5	14.0	5	6;22	y	0.15	7	40.5	7	3;78	y	0.41	12	17.5	12	4;31	y	0.20	5	20.5	5	0;41	n	0.10	6	54.0	6	10;98	y	0.03	1	33.0	1	9;57	n	0.11	4	33.5	4	7;60	y	ENSMUSG00000030555.17	Ttc23	chr7	protein_coding	tetratricopeptide repeat domain 23
known_NIR_17954	chr7	67305317	67312075	+	67297593	67312075	A5SS	ENSMUST00000133710.8	known	1.00	3	0	3	0	n	0.00	0	4	0	4	n	0.30	3	7	3	7	y	0.00	0	5	0	5	n	0.13	2	13	2	13	y	0.14	1	6	1	6	n	0.50	3	3	3	3	n	0.50	4	4	4	4	n	-	-	-	-	-	-	0.23	3	10	3	10	y	0.10	1	9	1	9	n	0.12	1	7	1	7	n	ENSMUSG00000030555.17	Ttc23	chr7	protein_coding	tetratricopeptide repeat domain 23
known_NIR_17955	chr7	67328819	67347972	+	67328819	67328976	3pMXE	ENSMUST00000153475.8	known	0.97	63	2	63	2	y	0.98	61	1	61	1	n	1.00	34	0	34	0	n	0.97	76	2	76	2	y	1.00	78	0	78	0	n	1.00	30	0	30	0	n	0.98	80	2	80	2	y	1.00	32	0	32	0	n	1.00	57	0	57	0	n	0.97	94	3	94	3	y	1.00	79	0	79	0	n	0.99	78	1	78	1	n	ENSMUSG00000030555.17	Ttc23	chr7	protein_coding	tetratricopeptide repeat domain 23
known_NIR_17956	chr7	67328819	67347972	+	67329068	67347972	5pMXE	ENSMUST00000137919.2	known	0.90	63	7	63	7	y	1.00	61	0	61	0	n	1.00	34	0	34	0	n	0.99	76	1	76	1	n	0.97	78	2	78	2	y	1.00	30	0	30	0	n	1.00	80	0	80	0	n	1.00	32	0	32	0	n	1.00	57	0	57	0	n	0.96	94	4	94	4	y	1.00	79	0	79	0	n	0.95	78	4	78	4	y	ENSMUSG00000030555.17	Ttc23	chr7	protein_coding	tetratricopeptide repeat domain 23
known_NIR_17957	chr7	67328819;67329068	67328976;67347972	+	67328819	67347972	cassetteExon	ENSMUST00000107471.8	known	0.07	4.5	63	2;7	63	y	0.01	0.5	61	1;0	61	n	0.00	0.0	34	0;0	34	n	0.02	1.5	76	2;1	76	n	0.01	1.0	78	0;2	78	n	0.00	0.0	30	0;0	30	n	0.01	1.0	80	2;0	80	n	0.00	0.0	32	0;0	32	n	0.00	0.0	57	0;0	57	n	0.04	3.5	94	3;4	94	y	0.00	0.0	79	0;0	79	n	0.03	2.5	78	1;4	78	n	ENSMUSG00000030555.17	Ttc23	chr7	protein_coding	tetratricopeptide repeat domain 23
known_NIR_17958	chr7	67375064	67375296	+	67375064	67375776	A3SS	ENSMUST00000032774.16	known	0.00	0	94	0	94	n	0.01	1	99	1	99	n	0.06	3	49	3	49	y	0.00	0	131	0	131	n	0.00	0	103	0	103	n	0.00	0	35	0	35	n	0.00	0	113	0	113	n	0.00	0	52	0	52	n	0.02	1	62	1	62	n	0.00	0	188	0	188	n	0.01	1	111	1	111	n	0.00	0	106	0	106	n	ENSMUSG00000030555.17	Ttc23	chr7	protein_coding	tetratricopeptide repeat domain 23
known_NIR_17959	chr7	67919982	67924906	-	67919982	67924654	5pMXE	ENSMUST00000135564.8	known	0.21	14	54	14	54	y	0.25	15	44	15	44	y	0.10	4	36	4	36	y	0.21	15	58	15	58	y	0.23	16	55	16	55	y	0.06	3	45	3	45	y	0.12	11	82	11	82	y	0.16	5	27	5	27	y	0.23	23	77	23	77	y	0.32	40	85	40	85	y	0.25	28	83	28	83	y	0.30	34	78	34	78	y	ENSMUSG00000086628.8	Gm16157	chr7	lncRNA	predicted gene 16157
known_NIR_17960	chr7	67925789	67950581	+	67923639	67950581	A5SS	ENSMUST00000125685.9	known	1.00	11	0	11	0	n	1.00	13	0	13	0	n	1.00	14	0	14	0	n	0.94	17	1	17	1	n	0.91	20	2	20	2	y	1.00	15	0	15	0	n	1.00	22	0	22	0	n	0.89	17	2	17	2	y	1.00	18	0	18	0	n	1.00	40	0	40	0	n	1.00	11	0	11	0	n	1.00	21	0	21	0	n	ENSMUSG00000074071.12	Fam169b	chr7	protein_coding	family with sequence similarity 169, member B
known_NIR_17961	chr7	67925789	67954300	+	67950711	67954300	A5SS&ES	ENSMUST00000125685.9	known	0.00	0	30	0	30	n	0.00	0	23	0	23	n	0.06	2	29	2	29	y	0.00	0	51	0	51	n	0.05	2	35	2	35	y	0.00	0	26	0	26	n	0.00	0	46	0	46	n	0.00	0	21	0	21	n	0.03	1	29	1	29	n	0.02	1	41	1	41	n	0.00	0	25	0	25	n	0.00	0	47	0	47	n	ENSMUSG00000074071.12	Fam169b	chr7	protein_coding	family with sequence similarity 169, member B
known_NIR_17962	chr7	67925789;67950711	67950581;67954300	+	67925789	67954300	cassetteExon	ENSMUST00000153805.8	known	1.00	20.5	0	11;30	0	n	1.00	18.0	0	13;23	0	n	0.91	21.5	2	14;29	2	y	1.00	34.0	0	17;51	0	n	0.93	27.5	2	20;35	2	y	1.00	20.5	0	15;26	0	n	1.00	34.0	0	22;46	0	n	1.00	19.0	0	17;21	0	n	0.96	23.5	1	18;29	1	n	0.98	40.5	1	40;41	1	n	1.00	18.0	0	11;25	0	n	1.00	34.0	0	21;47	0	n	ENSMUSG00000074071.12	Fam169b	chr7	protein_coding	family with sequence similarity 169, member B
known_NIR_17963	chr7	67971653	67999982	+	67971653;67979147	67978970;67999982	ES	ENSMUST00000125685.9	known	0.03	1	30.5	1	28;33	n	0.00	0	26.0	0	24;28	n	0.00	0	20.5	0	16;25	n	0.00	0	54.5	0	48;61	n	0.00	0	31.0	0	16;46	n	0.00	0	17.0	0	20;14	n	0.00	0	34.5	0	28;41	n	0.06	1	14.5	1	7;22	n	0.05	1	20.5	1	15;26	n	0.06	3	45.5	3	43;48	y	0.03	1	31.5	1	28;35	n	0.02	1	41.0	1	32;50	n	ENSMUSG00000074071.12	Fam169b	chr7	protein_coding	family with sequence similarity 169, member B
known_NIR_17964	chr7	67988861	67999982	+	67979147	67999982	A5SS	ENSMUST00000125685.9	known	0.00	0	33	0	33	n	0.00	0	28	0	28	n	0.04	1	25	1	25	n	0.00	0	61	0	61	n	0.02	1	46	1	46	n	0.00	0	14	0	14	n	0.05	2	41	2	41	y	0.12	3	22	3	22	y	0.13	4	26	4	26	y	0.04	2	48	2	48	y	0.05	2	35	2	35	y	0.00	0	50	0	50	n	ENSMUSG00000074071.12	Fam169b	chr7	protein_coding	family with sequence similarity 169, member B
known_NIR_17965	chr7	70008038	70009562	-	70008038	70009636	A5SS	ENSMUST00000032768.15	known	0.23	7	23	7	23	y	0.42	13	18	13	18	y	0.00	0	38	0	38	n	0.31	14	31	14	31	y	0.10	6	53	6	53	y	0.00	0	26	0	26	n	0.28	14	36	14	36	y	0.08	3	34	3	34	y	0.21	7	27	7	27	y	0.19	16	67	16	67	y	0.15	7	39	7	39	y	0.21	9	34	9	34	y	ENSMUSG00000030551.15	Nr2f2	chr7	protein_coding	nuclear receptor subfamily 2, group F, member 2
known_NIR_17966	chr7	70008038	70009562	-	70008038	70015841	A5SS	ENSMUST00000089565.6	known	1.00	7	0	7	0	n	1.00	13	0	13	0	n	-	-	-	-	-	-	0.82	14	3	14	3	y	1.00	6	0	6	0	n	-	-	-	-	-	-	0.93	14	1	14	1	n	0.75	3	1	3	1	n	1.00	7	0	7	0	n	0.80	16	4	16	4	y	1.00	7	0	7	0	n	0.90	9	1	9	1	n	ENSMUSG00000030551.15	Nr2f2	chr7	protein_coding	nuclear receptor subfamily 2, group F, member 2
known_NIR_17967	chr7	70008038	70015841	-	70008038	70009636	5pMXE	ENSMUST00000032768.15	known	0.00	0	23	0	23	n	0.00	0	18	0	18	n	0.00	0	38	0	38	n	0.09	3	31	3	31	y	0.00	0	53	0	53	n	0.00	0	26	0	26	n	0.03	1	36	1	36	n	0.03	1	34	1	34	n	0.00	0	27	0	27	n	0.06	4	67	4	67	y	0.00	0	39	0	39	n	0.03	1	34	1	34	n	ENSMUSG00000030551.15	Nr2f2	chr7	protein_coding	nuclear receptor subfamily 2, group F, member 2
known_NIR_17968	chr7	7233262	7237378	-	7216798	7237378	A3SS	ENSMUST00000209833.2	known	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.60	3	2	3	2	n	0.43	3	4	3	4	n	0.25	2	6	2	6	n	0.00	0	1	0	1	n	1.00	4	0	4	0	n	0.25	1	3	1	3	n	0.30	3	7	3	7	y	0.00	0	8	0	8	n	0.27	3	8	3	8	y	0.40	2	3	2	3	n	ENSMUSG00000110105.2	Gm45844	chr7	protein_coding	predicted gene 45844
known_NIR_17969	chr7	7237501	7270218	-	7237501;7243206	7242979;7270218	ES	ENSMUST00000209833.2	known	0.00	0	2.5	0	4;1	n	0.31	2	4.5	2	9;0	n	0.00	0	5.0	0	10;0	n	0.44	4	5.0	4	7;3	y	0.27	4	11.0	4	19;3	y	0.57	2	1.5	2	2;1	n	0.22	3	10.5	3	15;6	y	0.40	2	3.0	2	4;2	n	0.40	4	6.0	4	10;2	y	0.36	4	7.0	4	9;5	y	0.24	3	9.5	3	9;10	y	0.32	3	6.5	3	6;7	y	ENSMUSG00000110105.2	Gm45844	chr7	protein_coding	predicted gene 45844
known_NIR_17970	chr7	7243206	7244891	-	7243206	7270218	A5SS	ENSMUST00000209833.2	known	0.80	4	1	4	1	n	1.00	2	0	2	0	n	1.00	2	0	2	0	n	0.62	5	3	5	3	n	0.62	5	3	5	3	n	0.67	2	1	2	1	n	0.25	2	6	2	6	n	0.67	4	2	4	2	n	0.78	7	2	7	2	n	0.44	4	5	4	5	n	0.29	4	10	4	10	y	0.30	3	7	3	7	y	ENSMUSG00000110105.2	Gm45844	chr7	protein_coding	predicted gene 45844
known_NIR_17971	chr7	7243206	7270218	-	7243206;7247293	7244891;7270218	ES	ENSMUST00000210333.2	known	0.20	1	4.0	1	4;4	n	0.00	0	1.5	0	2;1	n	0.00	0	2.0	0	2;2	n	0.55	3	2.5	3	5;0	n	0.40	3	4.5	3	5;4	y	0.50	1	1.0	1	2;0	n	0.86	6	1.0	6	2;0	n	0.36	2	3.5	2	4;3	n	0.33	2	4.0	2	7;1	n	0.71	5	2.0	5	4;0	n	0.80	10	2.5	10	4;1	n	0.74	7	2.5	7	3;2	y	ENSMUSG00000110105.2	Gm45844	chr7	protein_coding	predicted gene 45844
known_NIR_17972	chr7	7270304;7270917	7270476;7271039	-	7270304	7271039	cassetteExon	ENSMUST00000209833.2	known	0.83	5.0	1	6;4	1	n	0.73	5.5	2	3;8	2	y	0.20	1.0	4	1;1	4	n	0.80	4.0	1	6;2	1	n	0.50	7.0	7	6;8	7	y	0.33	2.0	4	2;2	4	n	0.65	5.5	3	6;5	3	y	0.47	3.5	4	5;2	4	y	0.71	2.5	1	1;4	1	n	0.53	4.5	4	8;1	4	n	0.87	6.5	1	4;9	1	n	1.00	9.5	0	11;8	0	n	ENSMUSG00000110105.2	Gm45844	chr7	protein_coding	predicted gene 45844
known_NIR_17973	chr7	7272332	7281116	-	7272332	7281096	A5SS	ENSMUST00000209325.2	known	1.00	1	0	1	0	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.40	4	6	4	6	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.22	2	7	2	7	n	0.00	0	3	0	3	n	ENSMUSG00000110105.2	Gm45844	chr7	protein_coding	predicted gene 45844
known_NIR_17974	chr7	7298182;7299068	7298969;7301691	-	7298182	7301691	cassetteExon	ENSMUST00000210444.2	known	1.00	15.0	0	29;1	0	n	0.94	15.5	1	29;2	1	n	0.94	30.5	2	51;10	2	y	1.00	28.5	0	54;3	0	n	0.97	29.0	1	54;4	1	n	0.96	23.5	1	40;7	1	n	1.00	25.0	0	50;0	0	n	1.00	27.0	0	50;4	0	n	1.00	17.0	0	33;1	0	n	1.00	36.5	0	67;6	0	n	1.00	17.0	0	30;4	0	n	1.00	31.0	0	58;4	0	n	ENSMUSG00000000605.10	Clcn4	chr7	protein_coding	chloride channel, voltage-sensitive 4
known_NIR_17975	chr7	7299068	7301691	-	7299068;7299877	7299723;7301691	ES	ENSMUST00000000619.8	known	0.05	1	18.5	1	26;11	n	0.09	2	20.5	2	20;21	y	0.12	10	70.5	10	70;71	y	0.06	3	50.0	3	52;48	y	0.05	4	69.5	4	68;71	y	0.17	7	34.0	7	37;31	y	0.00	0	50.5	0	56;45	n	0.09	4	41.5	4	40;43	y	0.03	1	32.0	1	40;24	n	0.10	6	54.0	6	59;49	y	0.12	4	30.0	4	35;25	y	0.06	4	60.0	4	71;49	y	ENSMUSG00000000605.10	Clcn4	chr7	protein_coding	chloride channel, voltage-sensitive 4
known_NIR_17976	chr7	7299068	7301691	-	7299877	7301691	A3SS	ENSMUST00000211574.2	known	0.08	1	11	1	11	n	0.09	2	21	2	21	y	0.12	10	71	10	71	y	0.06	3	48	3	48	y	0.05	4	71	4	71	y	0.18	7	31	7	31	y	0.00	0	45	0	45	n	0.09	4	43	4	43	y	0.04	1	24	1	24	n	0.11	6	49	6	49	y	0.14	4	25	4	25	y	0.08	4	49	4	49	y	ENSMUSG00000000605.10	Clcn4	chr7	protein_coding	chloride channel, voltage-sensitive 4
known_NIR_17977	chr7	7299877	7301691	-	7298182	7301691	A3SS	ENSMUST00000210444.2	known	1.00	11	0	11	0	n	0.95	21	1	21	1	n	0.97	71	2	71	2	y	1.00	48	0	48	0	n	0.99	71	1	71	1	n	0.97	31	1	31	1	n	1.00	45	0	45	0	n	1.00	43	0	43	0	n	1.00	24	0	24	0	n	1.00	49	0	49	0	n	1.00	25	0	25	0	n	1.00	49	0	49	0	n	ENSMUSG00000000605.10	Clcn4	chr7	protein_coding	chloride channel, voltage-sensitive 4
known_NIR_17978	chr7	73085726	73091517	-	73085726	73091334	A5SS	ENSMUST00000169922.9	known	0.00	0	20	0	20	n	0.00	0	4	0	4	n	0.05	2	38	2	38	y	0.00	0	16	0	16	n	0.00	0	31	0	31	n	0.00	0	8	0	8	n	0.00	0	20	0	20	n	0.00	0	12	0	12	n	0.00	0	26	0	26	n	0.00	0	26	0	26	n	0.00	0	17	0	17	n	0.06	2	29	2	29	y	ENSMUSG00000078671.12	Chd2	chr7	protein_coding	chromodomain helicase DNA binding protein 2
known_NIR_17979	chr7	73085726	73091517	-	73085726;73091427	73091334;73091517	ES	ENSMUST00000208458.2	known	0.00	0	10.0	0	20;0	n	0.00	0	2.0	0	4;0	n	0.09	2	20.0	2	38;2	y	0.00	0	8.0	0	16;0	n	0.00	0	16.0	0	31;1	n	0.00	0	4.0	0	8;0	n	0.00	0	10.0	0	20;0	n	0.00	0	6.0	0	12;0	n	0.00	0	13.0	0	26;0	n	0.00	0	13.0	0	26;0	n	0.00	0	8.5	0	17;0	n	0.12	2	14.5	2	29;0	n	ENSMUSG00000078671.12	Chd2	chr7	protein_coding	chromodomain helicase DNA binding protein 2
known_NIR_17980	chr7	73104199;73104551	73104439;73105239	-	73104199	73105239	cassetteExon	ENSMUST00000169922.9	known	0.20	2.0	8	2;2	8	y	0.38	3.0	5	6;0	5	n	0.06	1.5	24	2;1	24	n	0.07	1.5	20	3;0	20	n	0.05	1.5	29	2;1	29	n	0.20	2.0	8	0;4	8	n	0.19	2.5	11	4;1	11	n	0.00	0.0	11	0;0	11	n	0.29	2.0	5	2;2	5	n	0.29	5.0	12	5;5	12	y	0.22	2.0	7	2;2	7	y	0.20	3.0	12	5;1	12	n	ENSMUSG00000078671.12	Chd2	chr7	protein_coding	chromodomain helicase DNA binding protein 2
known_NIR_17981	chr7	73125327	73128407	-	73125241	73128407	A3SS	ENSMUST00000169922.9	known	0.25	2	6	2	6	n	0.00	0	5	0	5	n	0.12	2	15	2	15	y	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	16	0	16	n	0.00	0	1	0	1	n	0.00	0	13	0	13	n	ENSMUSG00000078671.12	Chd2	chr7	protein_coding	chromodomain helicase DNA binding protein 2
known_NIR_17982	chr7	73154876	73163838	-	73154876;73157661	73157554;73163838	ES	ENSMUST00000169922.9	known	0.17	1	5.0	1	6;4	n	0.29	1	2.5	1	0;5	n	0.44	4	5.0	4	4;6	y	0.46	6	7.0	6	8;6	y	0.32	4	8.5	4	9;8	y	0.17	1	5.0	1	6;4	n	0.25	1	3.0	1	4;2	n	0.71	5	2.0	5	4;0	n	0.40	4	6.0	4	4;8	y	0.16	2	10.5	2	8;13	y	0.57	2	1.5	2	2;1	n	0.24	3	9.5	3	9;10	y	ENSMUSG00000078671.12	Chd2	chr7	protein_coding	chromodomain helicase DNA binding protein 2
known_NIR_17983	chr7	73154876	73163838	-	73157661	73163838	3pMXE	ENSMUST00000172704.6	known	0.20	1	4	1	4	n	0.17	1	5	1	5	n	0.40	4	6	4	6	y	0.50	6	6	6	6	y	0.33	4	8	4	8	y	0.20	1	4	1	4	n	0.33	1	2	1	2	n	1.00	5	0	5	0	n	0.33	4	8	4	8	y	0.13	2	13	2	13	y	0.67	2	1	2	1	n	0.23	3	10	3	10	y	ENSMUSG00000078671.12	Chd2	chr7	protein_coding	chromodomain helicase DNA binding protein 2
known_NIR_17984	chr7	73169456	73187057	-	73169456	73190520	A5SS	ENSMUST00000169922.9	known	1.00	2	0	2	0	n	0.00	0	2	0	2	n	0.33	2	4	2	4	n	1.00	3	0	3	0	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.38	3	5	3	5	n	0.60	3	2	3	2	n	0.36	4	7	4	7	y	-	-	-	-	-	-	0.43	3	4	3	4	n	ENSMUSG00000078671.12	Chd2	chr7	protein_coding	chromodomain helicase DNA binding protein 2
known_NIR_17985	chr7	73169456	73190994	-	73169456;73190652	73190520;73190994	ES	ENSMUST00000169922.9	known	0.33	1	2.0	1	0;4	n	0.00	0	4.0	0	2;6	n	0.00	0	2.5	0	4;1	n	0.67	1	0.5	1	0;1	n	0.32	3	6.5	3	4;9	y	0.00	0	2.5	0	3;2	n	0.15	1	5.5	1	6;5	n	0.00	0	5.0	0	5;5	n	0.00	0	2.0	0	2;2	n	0.35	3	5.5	3	7;4	y	0.00	0	1.5	0	0;3	n	0.00	0	4.0	0	4;4	n	ENSMUSG00000078671.12	Chd2	chr7	protein_coding	chromodomain helicase DNA binding protein 2
known_NIR_17986	chr7	73169456	73190994	-	73190652	73190994	3pMXE	ENSMUST00000200218.2	known	0.20	1	4	1	4	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.25	3	9	3	9	y	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.43	3	4	3	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000078671.12	Chd2	chr7	protein_coding	chromodomain helicase DNA binding protein 2
known_NIR_17987	chr7	73205668	73207523	-	73205668	73207787	A5SS	ENSMUST00000184587.5	known	0.15	3	17	3	17	y	0.20	5	20	5	20	y	0.18	4	18	4	18	y	0.19	7	30	7	30	y	0.19	6	26	6	26	y	0.36	5	9	5	9	y	0.18	4	18	4	18	y	0.36	5	9	5	9	y	0.20	4	16	4	16	y	0.43	10	13	10	13	y	0.33	7	14	7	14	y	0.48	12	13	12	13	y	ENSMUSG00000101970.9	Chaserr	chr7	lncRNA	CHD2 adjacent suppressive regulatory RNA
known_NIR_17988	chr7	75262188	75264669	+	75261296	75264669	A5SS	ENSMUST00000207750.2	known	0.22	2	7	2	7	n	0.17	1	5	1	5	n	0.00	0	29	0	29	n	0.00	0	22	0	22	n	0.09	2	21	2	21	y	0.18	2	9	2	9	y	0.17	3	15	3	15	y	0.00	0	11	0	11	n	0.40	4	6	4	6	y	0.08	2	24	2	24	y	0.23	3	10	3	10	y	0.14	2	12	2	12	y	ENSMUSG00000066406.17	Akap13	chr7	protein_coding	A kinase (PRKA) anchor protein 13
known_NIR_17989	chr7	75264796	75313160	+	75264796	75326854	A3SS	ENSMUST00000208456.2	known	0.71	5	2	5	2	n	1.00	10	0	10	0	n	1.00	23	0	23	0	n	0.97	28	1	28	1	n	1.00	8	0	8	0	n	1.00	10	0	10	0	n	1.00	15	0	15	0	n	1.00	20	0	20	0	n	1.00	13	0	13	0	n	1.00	19	0	19	0	n	0.83	10	2	10	2	y	1.00	17	0	17	0	n	ENSMUSG00000066406.17	Akap13	chr7	protein_coding	A kinase (PRKA) anchor protein 13
known_NIR_17990	chr7	75316396	75326854	+	75264796	75326854	A5SS	ENSMUST00000208456.2	known	0.89	17	2	17	2	y	1.00	11	0	11	0	n	1.00	26	0	26	0	n	0.97	35	1	35	1	n	1.00	28	0	28	0	n	1.00	13	0	13	0	n	1.00	18	0	18	0	n	1.00	23	0	23	0	n	1.00	11	0	11	0	n	1.00	28	0	28	0	n	0.80	8	2	8	2	y	1.00	24	0	24	0	n	ENSMUSG00000066406.17	Akap13	chr7	protein_coding	A kinase (PRKA) anchor protein 13
known_NIR_17991	chr7	75327227	75333142	+	75327227;75329621	75329568;75333142	ES	ENSMUST00000207750.2	known	0.33	2	4.0	2	2;6	y	0.00	0	0.5	0	0;1	n	0.00	0	4.5	0	6;3	n	0.00	0	2.5	0	4;1	n	-	-	-	-	-	-	0.00	0	2.5	0	5;0	n	0.40	2	3.0	2	3;3	n	0.00	0	0.5	0	1;0	n	0.00	0	3.5	0	5;2	n	0.40	1	1.5	1	1;2	n	0.00	0	1.5	0	2;1	n	0.00	0	1.0	0	1;1	n	ENSMUSG00000066406.17	Akap13	chr7	protein_coding	A kinase (PRKA) anchor protein 13
known_NIR_17992	chr7	75327227;75333207	75333142;75334865	+	75327227	75334865	cassetteExon	ENSMUST00000207923.2	known	0.12	2.5	19	2;3	19	y	0.08	1.0	12	0;2	12	n	0.10	2.0	18	0;4	18	n	0.11	2.0	17	0;4	17	n	0.05	1.0	19	0;2	19	n	0.04	0.5	12	0;1	12	n	0.13	3.5	24	2;5	24	y	0.00	0.0	9	0;0	9	n	0.06	0.5	8	0;1	8	n	0.11	3.0	25	1;5	25	n	0.03	0.5	14	0;1	14	n	0.03	0.5	14	0;1	14	n	ENSMUSG00000066406.17	Akap13	chr7	protein_coding	A kinase (PRKA) anchor protein 13
known_NIR_17993	chr7	75351900	75354113	+	75347182	75354113	A5SS	ENSMUST00000207750.2	known	0.12	2	15	2	15	y	0.12	1	7	1	7	n	0.07	3	39	3	39	y	0.00	0	29	0	29	n	0.00	0	26	0	26	n	0.12	2	15	2	15	y	0.05	1	21	1	21	n	0.05	1	18	1	18	n	0.11	2	16	2	16	y	0.05	1	20	1	20	n	0.00	0	16	0	16	n	0.00	0	24	0	24	n	ENSMUSG00000066406.17	Akap13	chr7	protein_coding	A kinase (PRKA) anchor protein 13
known_NIR_17994	chr7	75498221	75515085	+	75498221	75522446	A3SS	ENSMUST00000206418.2	known	1.00	9	0	9	0	n	0.75	3	1	3	1	n	0.96	48	2	48	2	y	1.00	10	0	10	0	n	1.00	16	0	16	0	n	1.00	9	0	9	0	n	1.00	7	0	7	0	n	1.00	15	0	15	0	n	0.88	7	1	7	1	n	1.00	11	0	11	0	n	1.00	10	0	10	0	n	1.00	16	0	16	0	n	ENSMUSG00000055652.15	Klhl25	chr7	protein_coding	kelch-like 25
known_NIR_17995	chr7	75498221	75522446	+	75498221;75516889	75515085;75522446	ES	ENSMUST00000171155.4	known	0.00	0	17.0	0	9;25	n	0.05	1	19.5	1	3;36	n	0.03	2	71.5	2	48;95	y	0.00	0	20.5	0	10;31	n	0.00	0	33.5	0	16;51	n	0.00	0	14.5	0	9;20	n	0.00	0	15.5	0	7;24	n	0.00	0	19.5	0	15;24	n	0.05	1	18.0	1	7;29	n	0.00	0	27.0	0	11;43	n	0.00	0	24.0	0	10;38	n	0.00	0	25.0	0	16;34	n	ENSMUSG00000055652.15	Klhl25	chr7	protein_coding	kelch-like 25
known_NIR_17996	chr7	75498221	75522446	+	75516889	75522446	A5SS&ES	ENSMUST00000092073.11	known	0.00	0	25	0	25	n	0.03	1	36	1	36	n	0.02	2	95	2	95	y	0.00	0	31	0	31	n	0.00	0	51	0	51	n	0.00	0	20	0	20	n	0.00	0	24	0	24	n	0.00	0	24	0	24	n	0.03	1	29	1	29	n	0.00	0	43	0	43	n	0.00	0	38	0	38	n	0.00	0	34	0	34	n	ENSMUSG00000055652.15	Klhl25	chr7	protein_coding	kelch-like 25
known_NIR_17997	chr7	75498232	75515085	+	75498221	75515085	A5SS	ENSMUST00000171155.4	known	0.31	4	9	4	9	y	0.70	7	3	7	3	y	0.33	24	48	24	48	y	0.47	9	10	9	10	y	0.38	10	16	10	16	y	0.36	5	9	5	9	y	0.42	5	7	5	7	y	0.29	6	15	6	15	y	0.22	2	7	2	7	n	0.35	6	11	6	11	y	0.41	7	10	7	10	y	0.06	1	16	1	16	n	ENSMUSG00000055652.15	Klhl25	chr7	protein_coding	kelch-like 25
known_NIR_17998	chr7	78431334	78432999	-	78431334	78432555	5pMXE	ENSMUST00000032841.7	known	0.00	0	96	0	96	n	0.00	0	108	0	108	n	0.00	0	91	0	91	n	0.00	0	100	0	100	n	0.00	0	122	0	122	n	0.00	0	69	0	69	n	0.01	1	127	1	127	n	0.00	0	74	0	74	n	0.00	0	92	0	92	n	0.03	4	135	4	135	y	0.00	0	109	0	109	n	0.00	0	107	0	107	n	ENSMUSG00000030612.7	Mrpl46	chr7	protein_coding	mitochondrial ribosomal protein L46
known_NIR_17999	chr7	78433434	78438423	+	78433428	78438423	A5SS	ENSMUST00000032840.5	known	0.09	8	85	8	85	y	0.08	7	84	7	84	y	0.17	14	66	14	66	y	0.11	11	89	11	89	y	0.11	10	77	10	77	y	0.07	4	56	4	56	y	0.07	7	93	7	93	y	0.15	8	47	8	47	y	0.12	7	51	7	51	y	0.08	11	122	11	122	y	0.11	10	80	10	80	y	0.10	10	88	10	88	y	ENSMUSG00000030611.11	Mrps11	chr7	protein_coding	mitochondrial ribosomal protein S11
known_NIR_18000	chr7	78477860	78483859	-	78473008	78483859	A3SS	ENSMUST00000138062.3	known	0.91	20	2	20	2	y	1.00	16	0	16	0	n	1.00	20	0	20	0	n	1.00	11	0	11	0	n	0.89	16	2	16	2	y	0.93	14	1	14	1	n	0.88	21	3	21	3	y	1.00	11	0	11	0	n	1.00	9	0	9	0	n	0.90	19	2	19	2	y	1.00	20	0	20	0	n	1.00	22	0	22	0	n	ENSMUSG00000030610.14	Det1	chr7	protein_coding	de-etiolated homolog 1 (Arabidopsis)
known_NIR_18001	chr7	78489940	78492920	-	78489940	78492584	A5SS	ENSMUST00000107431.3	known	1.00	15	0	15	0	n	0.80	8	2	8	2	y	0.88	14	2	14	2	y	0.94	17	1	17	1	n	1.00	21	0	21	0	n	1.00	9	0	9	0	n	1.00	21	0	21	0	n	0.83	5	1	5	1	n	0.82	9	2	9	2	y	1.00	16	0	16	0	n	1.00	11	0	11	0	n	0.95	18	1	18	1	n	ENSMUSG00000030610.14	Det1	chr7	protein_coding	de-etiolated homolog 1 (Arabidopsis)
known_NIR_18002	chr7	78545762	78549119	+	78545762	78551978	A3SS	ENSMUST00000107425.8	known	0.14	1	6	1	6	n	0.33	2	4	2	4	n	0.16	3	16	3	16	y	0.14	1	6	1	6	n	0.00	0	8	0	8	n	0.50	4	4	4	4	n	0.23	3	10	3	10	y	0.25	2	6	2	6	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.33	2	4	2	4	n	ENSMUSG00000030609.19	Aen	chr7	protein_coding	apoptosis enhancing nuclease
known_NIR_18003	chr7	78545762	78549119	+	78545762	78555591	A3SS	ENSMUST00000123824.2	known	0.08	1	11	1	11	n	0.08	2	22	2	22	y	0.19	3	13	3	13	y	0.12	1	7	1	7	n	0.00	0	10	0	10	n	0.31	4	9	4	9	y	0.10	3	27	3	27	y	0.25	2	6	2	6	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.13	2	13	2	13	y	ENSMUSG00000030609.19	Aen	chr7	protein_coding	apoptosis enhancing nuclease
known_NIR_18004	chr7	78545762	78552092	+	78545762	78551978	A3SS	ENSMUST00000107425.8	known	0.33	3	6	3	6	n	0.43	3	4	3	4	n	0.27	6	16	6	16	y	0.57	8	6	8	6	y	0.43	6	8	6	8	y	0.33	2	4	2	4	n	0.23	3	10	3	10	y	0.33	3	6	3	6	n	0.65	11	6	11	6	y	0.46	6	7	6	7	y	0.45	5	6	5	6	y	0.56	5	4	5	4	n	ENSMUSG00000030609.19	Aen	chr7	protein_coding	apoptosis enhancing nuclease
known_NIR_18005	chr7	78545762	78555591	+	78545762;78552578	78551978;78555591	ES	ENSMUST00000107425.8	known	0.46	11	13.0	11	6;20	y	0.58	22	16.0	22	4;28	y	0.29	13	32.0	13	16;48	y	0.31	7	15.5	7	6;25	y	0.42	10	14.0	10	8;20	y	0.36	9	16.0	9	4;28	y	0.56	27	21.5	27	10;33	y	0.30	6	14.0	6	6;22	y	0.21	3	11.5	3	6;17	y	0.38	8	13.0	8	7;19	y	0.29	6	14.5	6	6;23	y	0.49	13	13.5	13	4;23	y	ENSMUSG00000030609.19	Aen	chr7	protein_coding	apoptosis enhancing nuclease
known_NIR_18006	chr7	78545762	78555591	+	78552389	78555591	5pMXE	ENSMUST00000206661.2	known	1.00	11	0	11	0	n	1.00	22	0	22	0	n	1.00	13	0	13	0	n	1.00	7	0	7	0	n	1.00	10	0	10	0	n	0.82	9	2	9	2	y	1.00	27	0	27	0	n	1.00	6	0	6	0	n	1.00	3	0	3	0	n	1.00	8	0	8	0	n	0.75	6	2	6	2	n	1.00	13	0	13	0	n	ENSMUSG00000030609.19	Aen	chr7	protein_coding	apoptosis enhancing nuclease
known_NIR_18007	chr7	78545762	78555591	+	78552578	78555591	A5SS&ES	ENSMUST00000107423.2	known	0.35	11	20	11	20	y	0.44	22	28	22	28	y	0.21	13	48	13	48	y	0.22	7	25	7	25	y	0.33	10	20	10	20	y	0.24	9	28	9	28	y	0.45	27	33	27	33	y	0.21	6	22	6	22	y	0.15	3	17	3	17	y	0.30	8	19	8	19	y	0.21	6	23	6	23	y	0.36	13	23	13	23	y	ENSMUSG00000030609.19	Aen	chr7	protein_coding	apoptosis enhancing nuclease
known_NIR_18008	chr7	78545762;78552389	78551978;78555591	+	78545762	78555591	cassetteExon	ENSMUST00000123824.2	known	0.21	3.0	11	6;0	11	n	0.08	2.0	22	4;0	22	n	0.38	8.0	13	16;0	13	n	0.30	3.0	7	6;0	7	n	0.29	4.0	10	8;0	10	n	0.25	3.0	9	4;2	9	y	0.16	5.0	27	10;0	27	n	0.33	3.0	6	6;0	6	n	0.50	3.0	3	6;0	3	n	0.30	3.5	8	7;0	8	n	0.40	4.0	6	6;2	6	y	0.13	2.0	13	4;0	13	n	ENSMUSG00000030609.19	Aen	chr7	protein_coding	apoptosis enhancing nuclease
known_NIR_18009	chr7	78545762;78552389	78552092;78555591	+	78545762	78555591	cassetteExon	ENSMUST00000123824.2	known	0.12	1.5	11	3;0	11	n	0.06	1.5	22	3;0	22	n	0.19	3.0	13	6;0	13	n	0.36	4.0	7	8;0	7	n	0.23	3.0	10	6;0	10	n	0.18	2.0	9	2;2	9	y	0.05	1.5	27	3;0	27	n	0.20	1.5	6	3;0	6	n	0.65	5.5	3	11;0	3	n	0.27	3.0	8	6;0	8	n	0.37	3.5	6	5;2	6	y	0.16	2.5	13	5;0	13	n	ENSMUSG00000030609.19	Aen	chr7	protein_coding	apoptosis enhancing nuclease
known_NIR_18010	chr7	78545762;78552578	78552092;78555591	+	78545762	78555591	cassetteExon	ENSMUST00000123824.2	known	0.51	11.5	11	3;20	11	y	0.41	15.5	22	3;28	22	y	0.68	27.0	13	6;48	13	y	0.70	16.5	7	8;25	7	y	0.57	13.0	10	6;20	10	y	0.62	15.0	9	2;28	9	y	0.40	18.0	27	3;33	27	y	0.68	12.5	6	3;22	6	y	0.82	14.0	3	11;17	3	y	0.61	12.5	8	6;19	8	y	0.70	14.0	6	5;23	6	y	0.52	14.0	13	5;23	13	y	ENSMUSG00000030609.19	Aen	chr7	protein_coding	apoptosis enhancing nuclease
known_NIR_18011	chr7	78545949	78551978	+	78545762	78551978	A5SS	ENSMUST00000107425.8	known	0.14	1	6	1	6	n	0.00	0	4	0	4	n	0.11	2	16	2	16	y	0.00	0	6	0	6	n	0.20	2	8	2	8	y	0.00	0	4	0	4	n	0.09	1	10	1	10	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.14	1	6	1	6	n	0.20	1	4	1	4	n	ENSMUSG00000030609.19	Aen	chr7	protein_coding	apoptosis enhancing nuclease
known_NIR_18012	chr7	78550315	78551978	+	78545762	78551978	A5SS	ENSMUST00000107425.8	known	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	16	0	16	n	0.14	1	6	1	6	n	0.00	0	8	0	8	n	0.20	1	4	1	4	n	0.17	2	10	2	10	y	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.12	1	7	1	7	n	0.25	2	6	2	6	n	0.00	0	4	0	4	n	ENSMUSG00000030609.19	Aen	chr7	protein_coding	apoptosis enhancing nuclease
known_NIR_18013	chr7	78552389	78555591	+	78552578	78555591	A5SS	ENSMUST00000107425.8	known	0.00	0	20	0	20	n	0.00	0	28	0	28	n	0.00	0	48	0	48	n	0.00	0	25	0	25	n	0.00	0	20	0	20	n	0.07	2	28	2	28	y	0.00	0	33	0	33	n	0.00	0	22	0	22	n	0.00	0	17	0	17	n	0.00	0	19	0	19	n	0.08	2	23	2	23	y	0.00	0	23	0	23	n	ENSMUSG00000030609.19	Aen	chr7	protein_coding	apoptosis enhancing nuclease
known_NIR_18014	chr7	78792798;78793136	78793026;78794995	-	78792798	78794995	cassetteExon	ENSMUST00000107409.5	known	0.22	2.0	7	4;0	7	n	0.05	0.5	10	1;0	10	n	0.15	7.5	43	7;8	43	y	0.00	0.0	14	0;0	14	n	0.10	2.5	22	3;2	22	y	0.40	6.0	9	2;10	9	y	0.08	2.5	29	3;2	29	y	0.09	2.5	24	3;2	24	y	0.00	0.0	7	0;0	7	n	0.12	2.0	14	1;3	14	n	0.00	0.0	19	0;0	19	n	0.11	2.0	16	2;2	16	y	ENSMUSG00000030605.16	Mfge8	chr7	protein_coding	milk fat globule EGF and factor V/VIII domain containing
known_NIR_18015	chr7	79099282	79100233	-	79099785	79100233	A3SS	ENSMUST00000073889.14	known	0.00	0	84	0	84	n	0.00	0	126	0	126	n	0.00	0	85	0	85	n	0.00	0	78	0	78	n	0.00	0	134	0	134	n	0.00	0	62	0	62	n	0.00	0	115	0	115	n	0.00	0	67	0	67	n	0.02	2	81	2	81	y	0.00	0	128	0	128	n	0.00	0	110	0	110	n	0.00	0	92	0	92	n	ENSMUSG00000039176.18	Polg	chr7	protein_coding	polymerase (DNA directed), gamma
known_NIR_18016	chr7	79105936	79106183	-	79105896	79106183	A3SS	ENSMUST00000073889.14	known	0.09	4	39	4	39	y	0.05	2	41	2	41	y	0.00	0	57	0	57	n	0.06	3	44	3	44	y	0.06	5	81	5	81	y	0.00	0	31	0	31	n	0.01	1	68	1	68	n	0.05	2	37	2	37	y	0.02	1	51	1	51	n	0.01	1	66	1	66	n	0.03	1	33	1	33	n	0.01	1	66	1	66	n	ENSMUSG00000039176.18	Polg	chr7	protein_coding	polymerase (DNA directed), gamma
known_NIR_18017	chr7	79109048	79109261	-	79109048	79109185	A5SS	ENSMUST00000073889.14	known	0.02	1	51	1	51	n	0.00	0	30	0	30	n	0.06	3	50	3	50	y	0.00	0	59	0	59	n	0.04	2	49	2	49	y	0.00	0	34	0	34	n	0.00	0	44	0	44	n	0.00	0	24	0	24	n	0.03	1	38	1	38	n	0.02	1	51	1	51	n	0.00	0	47	0	47	n	0.04	2	52	2	52	y	ENSMUSG00000039176.18	Polg	chr7	protein_coding	polymerase (DNA directed), gamma
known_NIR_18018	chr7	79109048	79109459	-	79109048	79109185	A5SS&ES	ENSMUST00000073889.14	known	0.00	0	51	0	51	n	0.06	2	30	2	30	y	0.09	5	50	5	50	y	0.00	0	59	0	59	n	0.02	1	49	1	49	n	0.15	6	34	6	34	y	0.12	6	44	6	44	y	0.00	0	24	0	24	n	0.00	0	38	0	38	n	0.06	3	51	3	51	y	0.02	1	47	1	47	n	0.04	2	52	2	52	y	ENSMUSG00000039176.18	Polg	chr7	protein_coding	polymerase (DNA directed), gamma
known_NIR_18019	chr7	79109333	79109459	-	79109333	79109437	A5SS	ENSMUST00000073889.14	known	0.00	0	56	0	56	n	0.00	0	24	0	24	n	0.00	0	54	0	54	n	0.00	0	65	0	65	n	0.00	0	75	0	75	n	0.00	0	39	0	39	n	0.00	0	107	0	107	n	0.12	7	50	7	50	y	0.00	0	47	0	47	n	0.00	0	58	0	58	n	0.00	0	33	0	33	n	0.00	0	82	0	82	n	ENSMUSG00000039176.18	Polg	chr7	protein_coding	polymerase (DNA directed), gamma
known_NIR_18020	chr7	79387658	79392658	-	79387658	79389913	5pMXE	ENSMUST00000139620.2	known	0.06	8	134	8	134	y	0.09	9	89	9	89	y	0.14	31	193	31	193	y	0.08	11	121	11	121	y	0.07	16	200	16	200	y	0.09	16	156	16	156	y	0.08	23	255	23	255	y	0.09	17	166	17	166	y	0.17	14	69	14	69	y	0.11	23	195	23	195	y	0.07	8	111	8	111	y	0.07	7	91	7	91	y	ENSMUSG00000030545.10	Pex11a	chr7	protein_coding	peroxisomal biogenesis factor 11 alpha
known_NIR_18021	chr7	79387658	79392658	-	79387658;79390028	79389913;79392658	ES	ENSMUST00000032761.8	known	0.07	8	112.5	8	134;91	y	0.10	9	79.5	9	89;70	y	0.16	31	160.0	31	193;127	y	0.09	11	111.0	11	121;101	y	0.08	16	177.0	16	200;154	y	0.10	16	148.0	16	156;140	y	0.09	23	226.0	23	255;197	y	0.11	17	143.5	17	166;121	y	0.19	14	60.5	14	69;52	y	0.11	23	177.5	23	195;160	y	0.07	8	103.0	8	111;95	y	0.08	7	83.5	7	91;76	y	ENSMUSG00000030545.10	Pex11a	chr7	protein_coding	peroxisomal biogenesis factor 11 alpha
known_NIR_18022	chr7	79677833	79730797	+	79676231	79730797	A5SS	ENSMUST00000049680.10	known	0.00	0	2	0	2	n	0.67	4	2	4	2	n	0.27	3	8	3	8	y	0.60	3	2	3	2	n	0.33	3	6	3	6	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.14	1	6	1	6	n	0.40	2	3	2	3	n	0.00	0	4	0	4	n	ENSMUSG00000048897.16	Zfp710	chr7	protein_coding	zinc finger protein 710
known_NIR_18023	chr7	79736356;79738380	79738283;79740083	+	79736356	79740083	cassetteExon	ENSMUST00000164056.9	known	0.00	0.0	9	0;0	9	n	0.33	3.5	7	2;5	7	y	0.20	3.0	12	2;4	12	y	0.26	5.0	14	6;4	14	y	0.14	2.5	16	5;0	16	n	0.33	1.5	3	2;1	3	n	0.25	6.0	18	7;5	18	y	0.11	1.0	8	2;0	8	n	0.19	3.0	13	5;1	13	n	0.07	1.5	19	3;0	19	n	0.36	4.0	7	2;6	7	y	0.17	3.5	17	5;2	17	y	ENSMUSG00000048897.16	Zfp710	chr7	protein_coding	zinc finger protein 710
known_NIR_18024	chr7	79878281	79880064	-	79878296	79880064	A3SS	ENSMUST00000065163.15	known	0.03	12	349	12	349	y	0.00	0	331	0	331	n	0.00	0	354	0	354	n	0.00	0	357	0	357	n	0.04	20	489	20	489	y	0.00	0	191	0	191	n	0.00	0	429	0	429	n	0.00	0	213	0	213	n	0.00	0	285	0	285	n	0.05	26	458	26	458	y	0.03	14	394	14	394	y	0.00	0	385	0	385	n	ENSMUSG00000030538.16	Cib1	chr7	protein_coding	calcium and integrin binding 1 (calmyrin)
known_NIR_18025	chr7	79878296	79882258	-	79878296	79880064	5pMXE	ENSMUST00000206211.2	known	0.03	12	349	12	349	y	0.03	12	331	12	331	y	0.04	13	354	13	354	y	0.08	32	357	32	357	y	0.01	4	489	4	489	y	0.01	2	191	2	191	y	0.03	14	429	14	429	y	0.01	3	213	3	213	y	0.02	7	285	7	285	y	0.03	14	458	14	458	y	0.06	24	394	24	394	y	0.02	7	385	7	385	y	ENSMUSG00000030538.16	Cib1	chr7	protein_coding	calcium and integrin binding 1 (calmyrin)
known_NIR_18026	chr7	79878296	79882258	-	79882126	79882258	A3SS&ES	ENSMUST00000206084.2	known	0.03	12	353	12	353	y	0.03	12	349	12	349	y	0.04	13	325	13	325	y	0.08	32	350	32	350	y	0.01	4	458	4	458	y	0.01	2	196	2	196	y	0.03	14	427	14	427	y	0.02	3	183	3	183	y	0.02	7	314	7	314	y	0.03	14	420	14	420	y	0.05	24	413	24	413	y	0.02	7	362	7	362	y	ENSMUSG00000030538.16	Cib1	chr7	protein_coding	calcium and integrin binding 1 (calmyrin)
known_NIR_18027	chr7	79878296;79880172	79880064;79882258	-	79878296	79882258	cassetteExon	ENSMUST00000071457.12	known	0.94	175.5	12	349;2	12	y	0.93	169.0	12	331;7	12	y	0.93	183.0	13	354;12	13	y	0.85	180.0	32	357;3	32	y	0.98	246.0	4	489;3	4	y	0.98	97.0	2	191;3	2	y	0.94	218.5	14	429;8	14	y	0.97	107.0	3	213;1	3	n	0.95	145.0	7	285;5	7	y	0.94	231.0	14	458;4	14	y	0.89	198.0	24	394;2	24	y	0.97	195.0	7	385;5	7	y	ENSMUSG00000030538.16	Cib1	chr7	protein_coding	calcium and integrin binding 1 (calmyrin)
known_NIR_18028	chr7	79880172	79882258	-	79880172	79882092	5pMXE	ENSMUST00000123279.8	known	0.00	2	406	2	406	y	0.02	7	370	7	370	y	0.03	12	336	12	336	y	0.01	3	390	3	390	y	0.01	3	464	3	464	y	0.01	3	217	3	217	y	0.02	8	442	8	442	y	0.00	1	200	1	200	n	0.02	5	326	5	326	y	0.01	4	443	4	443	y	0.01	2	395	2	395	y	0.01	5	381	5	381	y	ENSMUSG00000030538.16	Cib1	chr7	protein_coding	calcium and integrin binding 1 (calmyrin)
known_NIR_18029	chr7	79880172	79882258	-	79880172;79882126	79882092;79882258	ES	ENSMUST00000065163.15	known	0.01	2	379.5	2	406;353	y	0.02	7	359.5	7	370;349	y	0.04	12	330.5	12	336;325	y	0.01	3	370.0	3	390;350	y	0.01	3	461.0	3	464;458	y	0.01	3	206.5	3	217;196	y	0.02	8	434.5	8	442;427	y	0.01	1	191.5	1	200;183	n	0.02	5	320.0	5	326;314	y	0.01	4	431.5	4	443;420	y	0.00	2	404.0	2	395;413	y	0.01	5	371.5	5	381;362	y	ENSMUSG00000030538.16	Cib1	chr7	protein_coding	calcium and integrin binding 1 (calmyrin)
known_NIR_18030	chr7	79880172	79882258	-	79882126	79882258	3pMXE	ENSMUST00000144295.2	known	0.01	2	353	2	353	y	0.02	7	349	7	349	y	0.04	12	325	12	325	y	0.01	3	350	3	350	y	0.01	3	458	3	458	y	0.02	3	196	3	196	y	0.02	8	427	8	427	y	0.01	1	183	1	183	n	0.02	5	314	5	314	y	0.01	4	420	4	420	y	0.00	2	413	2	413	y	0.01	5	362	5	362	y	ENSMUSG00000030538.16	Cib1	chr7	protein_coding	calcium and integrin binding 1 (calmyrin)
known_NIR_18031	chr7	79924433;79926213	79925794;79929720	+	79924433	79929720	cassetteExon	ENSMUST00000145594.3	known	1.00	8.0	0	6;10	0	n	1.00	6.0	0	7;5	0	n	0.94	15.5	1	15;16	1	n	0.64	7.0	4	8;6	4	y	1.00	13.0	0	13;13	0	n	1.00	3.0	0	3;3	0	n	0.55	6.0	5	7;5	5	y	0.89	8.0	1	7;9	1	n	1.00	6.0	0	4;8	0	n	1.00	8.0	0	8;8	0	n	1.00	9.5	0	9;10	0	n	0.90	9.0	1	5;13	1	n	ENSMUSG00000030534.14	Vps33b	chr7	protein_coding	vacuolar protein sorting 33B
known_NIR_18032	chr7	79929781	79932233	+	79929765	79932233	A5SS	ENSMUST00000032749.12	known	0.00	0	9	0	9	n	0.40	2	3	2	3	n	0.08	1	11	1	11	n	0.33	3	6	3	6	n	0.20	2	8	2	8	y	0.29	2	5	2	5	n	0.11	1	8	1	8	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.20	2	8	2	8	y	0.14	2	12	2	12	y	ENSMUSG00000030534.14	Vps33b	chr7	protein_coding	vacuolar protein sorting 33B
known_NIR_18033	chr7	79970929	79973498	-	79970929;79971091	79971025;79973498	ES	ENSMUST00000047362.11	known	0.00	0	5.5	0	5;6	n	0.00	0	7.5	0	5;10	n	0.12	1	7.5	1	7;8	n	0.00	0	5.0	0	5;5	n	0.30	3	7.0	3	8;6	y	0.00	0	4.0	0	2;6	n	0.00	0	12.0	0	14;10	n	0.00	0	3.0	0	4;2	n	0.00	0	5.5	0	4;7	n	0.00	0	7.5	0	5;10	n	0.00	0	4.5	0	2;7	n	0.00	0	7.0	0	6;8	n	ENSMUSG00000038930.12	Rccd1	chr7	protein_coding	RCC1 domain containing 1
known_NIR_18034	chr7	79978879	79979254	-	79978910	79979254	A3SS	ENSMUST00000154428.9	known	0.00	0	24	0	24	n	0.00	0	31	0	31	n	0.06	2	30	2	30	y	0.00	0	21	0	21	n	0.03	1	34	1	34	n	0.12	2	15	2	15	y	0.00	0	31	0	31	n	0.00	0	13	0	13	n	0.00	0	24	0	24	n	0.00	0	30	0	30	n	0.00	0	17	0	17	n	0.00	0	29	0	29	n	ENSMUSG00000030533.17	Unc45a	chr7	protein_coding	unc-45 myosin chaperone A
known_NIR_18035	chr7	79988907	79989062	-	79988764	79989062	A3SS	ENSMUST00000154428.9	known	0.23	5	17	5	17	y	0.43	9	12	9	12	y	0.14	4	24	4	24	y	0.04	1	23	1	23	n	0.15	4	22	4	22	y	0.12	1	7	1	7	n	0.26	5	14	5	14	y	0.05	1	20	1	20	n	0.20	2	8	2	8	y	0.28	8	21	8	21	y	0.43	6	8	6	8	y	0.33	4	8	4	8	y	ENSMUSG00000030533.17	Unc45a	chr7	protein_coding	unc-45 myosin chaperone A
known_NIR_18036	chr7	79989460	79989862	-	79989460	79989817	A5SS	ENSMUST00000154428.9	known	0.79	11	3	11	3	y	0.40	6	9	6	9	y	0.56	10	8	10	8	y	0.53	8	7	8	7	y	0.50	5	5	5	5	y	0.67	12	6	12	6	y	0.80	8	2	8	2	y	0.00	0	5	0	5	n	0.62	5	3	5	3	n	0.62	8	5	8	5	y	0.67	2	1	2	1	n	0.50	10	10	10	10	y	ENSMUSG00000030533.17	Unc45a	chr7	protein_coding	unc-45 myosin chaperone A
known_NIR_18037	chr7	79993203	79993287	+	79992997	79993287	A5SS	ENSMUST00000032747.7	known	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.10	1	9	1	9	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.11	1	8	1	8	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.18	2	9	2	9	y	0.20	2	8	2	8	y	0.00	0	3	0	3	n	ENSMUSG00000030532.7	Hddc3	chr7	protein_coding	HD domain containing 3
known_NIR_18038	chr7	80012986	80013215	-	80013084	80013215	A3SS	ENSMUST00000098346.5	known	0.00	0	19	0	19	n	0.00	0	15	0	15	n	0.05	1	19	1	19	n	0.00	0	32	0	32	n	0.04	1	22	1	22	n	0.10	2	19	2	19	y	0.00	0	37	0	37	n	0.00	0	15	0	15	n	0.15	3	17	3	17	y	0.00	0	34	0	34	n	0.00	0	18	0	18	n	0.00	0	31	0	31	n	ENSMUSG00000038886.11	Man2a2	chr7	protein_coding	mannosidase 2, alpha 2
known_NIR_18039	chr7	80019520	80020480	-	80019493	80020480	A3SS	ENSMUST00000098346.5	known	0.20	2	8	2	8	y	0.00	0	5	0	5	n	0.06	1	16	1	16	n	0.11	3	24	3	24	y	0.00	0	19	0	19	n	0.33	3	6	3	6	n	0.26	5	14	5	14	y	0.15	3	17	3	17	y	0.11	2	17	2	17	y	0.18	5	23	5	23	y	0.19	3	13	3	13	y	0.43	9	12	9	12	y	ENSMUSG00000038886.11	Man2a2	chr7	protein_coding	mannosidase 2, alpha 2
known_NIR_18040	chr7	80029482	80029566	-	80029452	80029566	A3SS	ENSMUST00000205617.2	known	0.90	18	2	18	2	y	1.00	11	0	11	0	n	1.00	11	0	11	0	n	1.00	11	0	11	0	n	1.00	12	0	12	0	n	1.00	8	0	8	0	n	1.00	19	0	19	0	n	1.00	5	0	5	0	n	1.00	11	0	11	0	n	0.75	9	3	9	3	y	1.00	11	0	11	0	n	1.00	13	0	13	0	n	ENSMUSG00000053158.11	Fes	chr7	protein_coding	feline sarcoma oncogene
known_NIR_18041	chr7	80032179	80032269	-	80032144	80032269	A3SS	ENSMUST00000205617.2	known	0.33	2	4	2	4	n	0.50	8	8	8	8	y	0.55	6	5	6	5	y	0.29	2	5	2	5	n	0.33	5	10	5	10	y	0.00	0	7	0	7	n	0.65	11	6	11	6	y	0.33	1	2	1	2	n	0.29	2	5	2	5	n	0.33	4	8	4	8	y	0.29	2	5	2	5	n	0.40	4	6	4	6	y	ENSMUSG00000053158.11	Fes	chr7	protein_coding	feline sarcoma oncogene
known_NIR_18042	chr7	80047720	80052278	-	80048676	80052278	A3SS&ES	ENSMUST00000122232.8	known	0.00	0	86	0	86	n	0.00	0	76	0	76	n	0.03	3	114	3	114	y	0.00	0	176	0	176	n	0.00	0	177	0	177	n	0.00	0	101	0	101	n	0.00	0	123	0	123	n	0.00	0	115	0	115	n	0.00	0	66	0	66	n	0.00	0	127	0	127	n	0.00	0	89	0	89	n	0.00	0	154	0	154	n	ENSMUSG00000030530.16	Furin	chr7	protein_coding	furin (paired basic amino acid cleaving enzyme)
known_NIR_18043	chr7	80048676	80051175	-	80048676	80052278	A5SS	ENSMUST00000122232.8	known	0.04	4	86	4	86	y	0.06	5	76	5	76	y	0.04	5	114	5	114	y	0.07	14	176	14	176	y	0.05	10	177	10	177	y	0.08	9	101	9	101	y	0.12	17	123	17	123	y	0.06	7	115	7	115	y	0.06	4	66	4	66	y	0.11	15	127	15	127	y	0.06	6	89	6	89	y	0.06	10	154	10	154	y	ENSMUSG00000030530.16	Furin	chr7	protein_coding	furin (paired basic amino acid cleaving enzyme)
known_NIR_18044	chr7	80048676	80051175	-	80048676	80055067	A5SS	ENSMUST00000107362.10	known	0.80	4	1	4	1	n	1.00	5	0	5	0	n	1.00	5	0	5	0	n	1.00	14	0	14	0	n	0.83	10	2	10	2	y	1.00	9	0	9	0	n	1.00	17	0	17	0	n	0.88	7	1	7	1	n	1.00	4	0	4	0	n	0.94	15	1	15	1	n	1.00	6	0	6	0	n	1.00	10	0	10	0	n	ENSMUSG00000030530.16	Furin	chr7	protein_coding	furin (paired basic amino acid cleaving enzyme)
known_NIR_18045	chr7	80048676	80053020	-	80048676	80051175	5pMXE	ENSMUST00000120753.3	known	0.43	3	4	3	4	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.17	2	10	2	10	y	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.12	1	7	1	7	n	0.00	0	4	0	4	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	ENSMUSG00000030530.16	Furin	chr7	protein_coding	furin (paired basic amino acid cleaving enzyme)
known_NIR_18046	chr7	80048676	80053020	-	80048676	80052278	5pMXE	ENSMUST00000122232.8	known	0.03	3	86	3	86	y	0.00	0	76	0	76	n	0.00	0	114	0	114	n	0.00	0	176	0	176	n	0.01	2	177	2	177	y	0.00	0	101	0	101	n	0.00	0	123	0	123	n	0.01	1	115	1	115	n	0.00	0	66	0	66	n	0.00	0	127	0	127	n	0.00	0	89	0	89	n	0.00	0	154	0	154	n	ENSMUSG00000030530.16	Furin	chr7	protein_coding	furin (paired basic amino acid cleaving enzyme)
known_NIR_18047	chr7	80048676	80055067	-	80048676	80052278	5pMXE	ENSMUST00000122232.8	known	0.01	1	86	1	86	n	0.00	0	76	0	76	n	0.00	0	114	0	114	n	0.00	0	176	0	176	n	0.01	2	177	2	177	y	0.00	0	101	0	101	n	0.00	0	123	0	123	n	0.01	1	115	1	115	n	0.00	0	66	0	66	n	0.01	1	127	1	127	n	0.00	0	89	0	89	n	0.00	0	154	0	154	n	ENSMUSG00000030530.16	Furin	chr7	protein_coding	furin (paired basic amino acid cleaving enzyme)
known_NIR_18048	chr7	80105184	80106780	-	80105184	80108561	A5SS	ENSMUST00000206901.2	known	0.71	5	2	5	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.67	4	2	4	2	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.33	3	6	3	6	n	1.00	1	0	1	0	n	0.50	3	3	3	3	n	0.70	7	3	7	3	y	0.44	4	5	4	5	n	0.50	1	1	1	1	n	ENSMUSG00000030528.13	Blm	chr7	protein_coding	Bloom syndrome, RecQ like helicase
known_NIR_18049	chr7	80543014	80543397	-	80543089	80543397	A3SS	ENSMUST00000026816.15	known	0.00	0	22	0	22	n	0.19	3	13	3	13	y	0.14	6	37	6	37	y	0.00	0	30	0	30	n	0.06	2	30	2	30	y	0.00	0	22	0	22	n	0.14	6	36	6	36	y	0.00	0	19	0	19	n	0.06	2	33	2	33	y	0.06	3	46	3	46	y	0.08	3	36	3	36	y	0.21	8	31	8	31	y	ENSMUSG00000025722.17	Wdr73	chr7	protein_coding	WD repeat domain 73
known_NIR_18050	chr7	80547735	80550096	-	80547735;80548339	80548251;80550096	ES	ENSMUST00000026816.15	known	0.00	0	20.5	0	16;25	n	0.04	1	25.5	1	27;24	n	0.00	0	31.5	0	37;26	n	0.09	4	43.0	4	52;34	y	0.07	4	51.0	4	63;39	y	0.00	0	31.0	0	42;20	n	0.09	3	29.5	3	33;26	y	0.07	2	26.5	2	31;22	y	0.03	1	33.0	1	39;27	n	0.09	4	42.5	4	52;33	y	0.05	2	42.0	2	44;40	y	0.03	1	30.5	1	22;39	n	ENSMUSG00000025722.17	Wdr73	chr7	protein_coding	WD repeat domain 73
known_NIR_18051	chr7	80550201	80550392	-	80550184	80550392	A3SS	ENSMUST00000026816.15	known	0.09	2	20	2	20	y	0.04	1	25	1	25	n	0.00	0	25	0	25	n	0.02	1	40	1	40	n	0.00	0	32	0	32	n	0.00	0	14	0	14	n	0.04	1	27	1	27	n	0.00	0	21	0	21	n	0.09	3	31	3	31	y	0.00	0	40	0	40	n	0.00	0	39	0	39	n	0.00	0	34	0	34	n	ENSMUSG00000025722.17	Wdr73	chr7	protein_coding	WD repeat domain 73
known_NIR_18052	chr7	80550459	80550644	-	80550459	80550933	A5SS	ENSMUST00000026816.15	known	0.00	0	17	0	17	n	0.00	0	8	0	8	n	0.00	0	16	0	16	n	0.08	2	23	2	23	y	0.08	2	23	2	23	y	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.00	0	18	0	18	n	0.00	0	27	0	27	n	0.00	0	19	0	19	n	0.00	0	19	0	19	n	ENSMUSG00000025722.17	Wdr73	chr7	protein_coding	WD repeat domain 73
known_NIR_18053	chr7	80565980;80572132	80572095;80572849	-	80565980	80572849	cassetteExon	ENSMUST00000147813.8	known	0.00	0.0	262	0;0	262	n	0.01	2.0	271	2;2	271	y	0.00	0.5	321	1;0	321	n	0.00	0.0	226	0;0	226	n	0.00	0.5	386	1;0	386	n	0.00	0.5	203	1;0	203	n	0.00	0.0	364	0;0	364	n	0.00	0.0	207	0;0	207	n	0.00	0.0	197	0;0	197	n	0.00	1.0	299	0;2	299	n	0.00	0.0	253	0;0	253	n	0.00	0.0	222	0;0	222	n	ENSMUSG00000025724.13	Sec11a	chr7	protein_coding	SEC11 homolog A, signal peptidase complex subunit
known_NIR_18054	chr7	80584884	80597150	-	80572963	80597150	A3SS	ENSMUST00000147813.8	known	1.00	208	0	208	0	n	0.98	175	3	175	3	y	1.00	281	0	281	0	n	0.99	246	3	246	3	y	1.00	327	0	327	0	n	0.99	185	2	185	2	y	1.00	250	0	250	0	n	1.00	182	0	182	0	n	1.00	185	0	185	0	n	1.00	226	0	226	0	n	1.00	216	0	216	0	n	1.00	198	0	198	0	n	ENSMUSG00000025724.13	Sec11a	chr7	protein_coding	SEC11 homolog A, signal peptidase complex subunit
known_NIR_18055	chr7	80994164	80994687	-	80994164	80994605	A5SS	ENSMUST00000080813.5	known	0.00	10	2908	10	2908	y	0.00	13	3162	13	3162	y	0.01	19	3568	19	3568	y	0.00	6	2415	6	2415	y	0.00	10	3506	10	3506	y	0.00	7	2015	7	2015	y	0.01	20	3970	20	3970	y	0.00	7	1824	7	1824	y	0.00	4	2481	4	2481	y	0.00	10	3465	10	3465	y	0.00	8	3179	8	3179	y	0.00	11	3169	11	3169	y	ENSMUSG00000061787.16	Rps17	chr7	protein_coding	ribosomal protein S17
known_NIR_18056	chr7	81021951	81085951	-	81021948	81085951	A3SS	ENSMUST00000098331.10	known	1.00	1	0	1	0	n	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.25	1	3	1	3	n	0.25	2	6	2	6	n	0.67	2	1	2	1	n	0.40	4	6	4	6	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.12	1	7	1	7	n	0.25	1	3	1	3	n	0.33	2	4	2	4	n	ENSMUSG00000025586.18	Cpeb1	chr7	protein_coding	cytoplasmic polyadenylation element binding protein 1
known_NIR_18057	chr7	81173424	81179095	+	81173424	81178535	A3SS&ES	ENSMUST00000181903.8	known	0.25	1	3	1	3	n	0.20	2	8	2	8	y	0.50	1	1	1	1	n	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.40	4	6	4	6	y	0.10	1	9	1	9	n	ENSMUSG00000097277.8	2900076A07Rik	chr7	lncRNA	RIKEN cDNA 2900076A07 gene
known_NIR_18058	chr7	81173424	81179095	+	81178688	81179095	A5SS&ES	ENSMUST00000181164.8	known	0.17	1	5	1	5	n	0.33	2	4	2	4	n	0.09	1	10	1	10	n	0.14	1	6	1	6	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.31	4	9	4	9	y	0.12	1	7	1	7	n	ENSMUSG00000097277.8	2900076A07Rik	chr7	lncRNA	RIKEN cDNA 2900076A07 gene
known_NIR_18059	chr7	81173424;81178688	81178535;81179095	+	81173424	81179095	cassetteExon	ENSMUST00000180385.2	known	0.80	4.0	1	3;5	1	n	0.75	6.0	2	8;4	2	y	0.85	5.5	1	1;10	1	n	0.85	5.5	1	5;6	1	n	1.00	7.0	0	5;9	0	n	1.00	4.5	0	3;6	0	n	1.00	4.5	0	2;7	0	n	1.00	2.5	0	1;4	0	n	1.00	6.0	0	6;6	0	n	1.00	6.5	0	5;8	0	n	0.65	7.5	4	6;9	4	y	0.89	8.0	1	9;7	1	n	ENSMUSG00000097277.8	2900076A07Rik	chr7	lncRNA	RIKEN cDNA 2900076A07 gene
known_NIR_18060	chr7	81178688	81179095	+	81178688	81178905	A3SS	ENSMUST00000181903.8	known	0.56	5	4	5	4	n	0.50	4	4	4	4	n	0.91	10	1	10	1	n	0.86	6	1	6	1	n	0.82	9	2	9	2	y	0.86	6	1	6	1	n	0.70	7	3	7	3	y	0.80	4	1	4	1	n	1.00	6	0	6	0	n	0.73	8	3	8	3	y	0.56	9	7	9	7	y	1.00	7	0	7	0	n	ENSMUSG00000097277.8	2900076A07Rik	chr7	lncRNA	RIKEN cDNA 2900076A07 gene
known_NIR_18061	chr7	81178688;81179006	81178905;81179095	+	81178688	81179095	cassetteExon	ENSMUST00000181164.8	known	0.41	3.5	5	4;3	5	y	0.33	2.0	4	4;0	4	n	0.05	0.5	10	1;0	10	n	0.08	0.5	6	1;0	6	n	0.10	1.0	9	2;0	9	n	0.08	0.5	6	1;0	6	n	0.22	2.0	7	3;1	7	n	0.11	0.5	4	1;0	4	n	0.00	0.0	6	0;0	6	n	0.24	2.5	8	3;2	8	y	0.28	3.5	9	7;0	9	n	0.00	0.0	7	0;0	7	n	ENSMUSG00000097277.8	2900076A07Rik	chr7	lncRNA	RIKEN cDNA 2900076A07 gene
known_NIR_18062	chr7	81224467	81227899	+	81224450	81227899	A5SS	ENSMUST00000207123.2	known	0.89	73	9	73	9	y	0.82	36	8	36	8	y	0.91	40	4	40	4	y	0.84	56	11	56	11	y	0.71	53	22	53	22	y	0.94	34	2	34	2	y	0.89	63	8	63	8	y	0.86	32	5	32	5	y	0.94	60	4	60	4	y	0.87	79	12	79	12	y	0.86	49	8	49	8	y	0.92	69	6	69	6	y	ENSMUSG00000045795.11	Whamm	chr7	protein_coding	WAS protein homolog associated with actin, golgi membranes and microtubules
known_NIR_18063	chr7	81268430	81274000	-	81268463	81274000	A3SS	ENSMUST00000098326.3	known	0.65	41	22	41	22	y	0.74	35	12	35	12	y	0.59	16	11	16	11	y	0.49	22	23	22	23	y	0.52	40	37	40	37	y	0.77	17	5	17	5	y	0.52	26	24	26	24	y	0.84	27	5	27	5	y	0.70	43	18	43	18	y	0.59	60	41	60	41	y	0.55	34	28	34	28	y	0.73	40	15	40	15	y	ENSMUSG00000025813.15	Homer2	chr7	protein_coding	homer scaffolding protein 2
known_NIR_18064	chr7	81299458	81338030	-	81299458	81356507	A5SS	ENSMUST00000207983.2	known	0.03	1	30	1	30	n	0.20	4	16	4	16	y	0.16	3	16	3	16	y	0.12	4	28	4	28	y	0.12	6	42	6	42	y	0.17	3	15	3	15	y	0.14	3	19	3	19	y	0.12	1	7	1	7	n	0.12	3	21	3	21	y	0.14	7	42	7	42	y	0.07	2	26	2	26	y	0.05	2	35	2	35	y	ENSMUSG00000025813.15	Homer2	chr7	protein_coding	homer scaffolding protein 2
known_NIR_18065	chr7	81438324	81439000	-	81438324	81439103	A5SS	ENSMUST00000026092.9	known	0.67	49	24	49	24	y	0.62	40	24	40	24	y	0.56	49	39	49	39	y	0.53	32	28	32	28	y	0.63	54	32	54	32	y	0.45	29	35	29	35	y	0.54	49	42	49	42	y	0.49	22	23	22	23	y	0.72	51	20	51	20	y	0.55	51	42	51	42	y	0.53	47	41	47	41	y	0.30	18	43	18	43	y	ENSMUSG00000025102.15	3110040N11Rik	chr7	protein_coding	RIKEN cDNA 3110040N11 gene
known_NIR_18066	chr7	81438324	81439000	-	81438324	81439176	A5SS	ENSMUST00000142557.8	known	0.94	49	3	49	3	y	0.91	40	4	40	4	y	0.91	49	5	49	5	y	0.91	32	3	32	3	y	0.89	54	7	54	7	y	0.97	29	1	29	1	n	0.98	49	1	49	1	n	0.71	22	9	22	9	y	0.88	51	7	51	7	y	0.88	51	7	51	7	y	0.92	47	4	47	4	y	0.75	18	6	18	6	y	ENSMUSG00000025102.15	3110040N11Rik	chr7	protein_coding	RIKEN cDNA 3110040N11 gene
known_NIR_18067	chr7	81438324	81439176	-	81438324	81439103	A5SS	ENSMUST00000026092.9	known	0.11	3	24	3	24	y	0.14	4	24	4	24	y	0.11	5	39	5	39	y	0.10	3	28	3	28	y	0.18	7	32	7	32	y	0.03	1	35	1	35	n	0.02	1	42	1	42	n	0.28	9	23	9	23	y	0.26	7	20	7	20	y	0.14	7	42	7	42	y	0.09	4	41	4	41	y	0.12	6	43	6	43	y	ENSMUSG00000025102.15	3110040N11Rik	chr7	protein_coding	RIKEN cDNA 3110040N11 gene
known_NIR_18068	chr7	81446831	81450133	-	81446831	81450706	A5SS	ENSMUST00000026093.9	known	0.12	6	46	6	46	y	0.11	8	63	8	63	y	0.08	8	90	8	90	y	0.07	5	69	5	69	y	0.07	7	93	7	93	y	0.04	2	54	2	54	y	0.04	4	105	4	105	y	0.07	3	39	3	39	y	0.03	2	62	2	62	y	0.10	8	75	8	75	y	0.05	4	69	4	69	y	0.01	1	87	1	87	n	ENSMUSG00000025103.9	Btbd1	chr7	protein_coding	BTB (POZ) domain containing 1
known_NIR_18069	chr7	82297886	82298734	+	82297857	82298734	A5SS	ENSMUST00000141726.8	known	1.00	1	0	1	0	n	1.00	4	0	4	0	n	0.70	7	3	7	3	y	0.50	1	1	1	1	n	0.62	5	3	5	3	n	0.67	2	1	2	1	n	0.33	1	2	1	2	n	0.67	2	1	2	1	n	0.25	1	3	1	3	n	0.40	2	3	2	3	n	1.00	3	0	3	0	n	0.75	9	3	9	3	y	ENSMUSG00000038563.15	Efl1	chr7	protein_coding	elongation factor like GTPase 1
known_NIR_18070	chr7	83281347	83282338	+	83281347;83281993	83281944;83282338	ES	ENSMUST00000075418.15	known	0.00	1	363.0	1	342;384	n	0.00	0	291.5	0	271;312	n	0.00	0	211.0	0	202;220	n	0.00	0	473.0	0	428;518	n	0.00	0	514.0	0	467;561	n	0.00	0	137.0	0	127;147	n	0.01	2	392.5	2	365;420	y	0.00	0	233.0	0	218;248	n	0.00	0	334.5	0	303;366	n	0.00	0	494.5	0	449;540	n	0.00	0	348.5	0	309;388	n	0.00	2	424.5	2	379;470	y	ENSMUSG00000046027.18	Stard5	chr7	protein_coding	StAR-related lipid transfer (START) domain containing 5
known_NIR_18071	chr7	83541683	83544738	+	83533863	83544738	A5SS	ENSMUST00000138803.8	known	1.00	108	0	108	0	n	0.97	74	2	74	2	y	1.00	136	0	136	0	n	1.00	94	0	94	0	n	1.00	160	0	160	0	n	1.00	78	0	78	0	n	0.98	110	2	110	2	y	0.99	77	1	77	1	n	1.00	76	0	76	0	n	1.00	103	0	103	0	n	1.00	89	0	89	0	n	1.00	115	0	115	0	n	ENSMUSG00000038503.16	Mesd	chr7	protein_coding	mesoderm development LRP chaperone
known_NIR_18072	chr7	83542082	83544738	+	83541683	83544738	A5SS	ENSMUST00000094215.10	known	0.00	0	108	0	108	n	0.00	0	74	0	74	n	0.01	1	136	1	136	n	0.00	0	94	0	94	n	0.00	0	160	0	160	n	0.00	0	78	0	78	n	0.00	0	110	0	110	n	0.00	0	77	0	77	n	0.00	0	76	0	76	n	0.02	2	103	2	103	y	0.00	0	89	0	89	n	0.00	0	115	0	115	n	ENSMUSG00000038503.16	Mesd	chr7	protein_coding	mesoderm development LRP chaperone
known_NIR_18073	chr7	84246483	84249985	-	84246483;84248352	84248262;84249985	ES	ENSMUST00000032865.17	known	0.00	0	1725.0	0	1742;1708	n	0.00	0	1508.0	0	1568;1448	n	0.00	0	524.0	0	515;533	n	0.00	0	1946.5	0	1931;1962	n	0.00	2	2011.0	2	1992;2030	y	0.00	0	478.0	0	500;456	n	0.00	0	1927.0	0	2023;1831	n	0.00	0	792.0	0	768;816	n	0.00	0	1504.0	0	1493;1515	n	0.00	2	2089.0	2	2156;2022	y	0.00	1	1708.0	1	1741;1675	n	0.00	0	2128.5	0	2161;2096	n	ENSMUSG00000030630.17	Fah	chr7	protein_coding	fumarylacetoacetate hydrolase
known_NIR_18074	chr7	84250362	84251242	-	84250362	84251289	A5SS	ENSMUST00000032865.17	known	0.00	3	1709	3	1709	y	0.00	5	1445	5	1445	y	0.01	4	637	4	637	y	0.00	3	2031	3	2031	y	0.00	10	2067	10	2067	y	0.00	0	520	0	520	n	0.00	9	1890	9	1890	y	0.00	2	877	2	877	y	0.00	2	1598	2	1598	y	0.01	11	2140	11	2140	y	0.00	4	1658	4	1658	y	0.00	8	2347	8	2347	y	ENSMUSG00000030630.17	Fah	chr7	protein_coding	fumarylacetoacetate hydrolase
known_NIR_18075	chr7	84283198	84283447	-	84283201	84283447	A3SS	ENSMUST00000209117.2	known	0.19	37	157	37	157	y	0.26	37	107	37	107	y	0.16	36	185	36	185	y	0.15	33	186	33	186	y	0.14	47	301	47	301	y	0.19	31	128	31	128	y	0.13	42	274	42	274	y	0.18	29	128	29	128	y	0.20	43	167	43	167	y	0.16	57	292	57	292	y	0.16	38	204	38	204	y	0.20	43	169	43	169	y	ENSMUSG00000030629.16	Zfand6	chr7	protein_coding	zinc finger, AN1-type domain 6
known_NIR_18076	chr7	84283617	84328518	-	84283617	84302090	A5SS&ES	ENSMUST00000209165.2	known	0.40	4	6	4	6	y	0.00	0	4	0	4	n	0.33	4	8	4	8	y	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.11	1	8	1	8	n	0.11	1	8	1	8	n	0.00	0	2	0	2	n	0.05	1	20	1	20	n	0.00	0	16	0	16	n	0.07	1	14	1	14	n	ENSMUSG00000030629.16	Zfand6	chr7	protein_coding	zinc finger, AN1-type domain 6
known_NIR_18077	chr7	84283617	84328518	-	84283617	84338954	A5SS	ENSMUST00000209117.2	known	0.03	4	138	4	138	y	0.00	0	87	0	87	n	0.02	4	158	4	158	y	0.00	0	184	0	184	n	0.00	0	223	0	223	n	0.00	0	140	0	140	n	0.01	1	169	1	169	n	0.01	1	100	1	100	n	0.00	0	149	0	149	n	0.00	1	222	1	222	n	0.00	0	147	0	147	n	0.01	1	139	1	139	n	ENSMUSG00000030629.16	Zfand6	chr7	protein_coding	zinc finger, AN1-type domain 6
known_NIR_18078	chr7	84283617	84328552	-	84283617	84302090	A5SS&ES	ENSMUST00000069537.3	known	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.20	2	8	2	8	y	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	20	0	20	n	0.00	0	16	0	16	n	0.00	0	14	0	14	n	ENSMUSG00000030629.16	Zfand6	chr7	protein_coding	zinc finger, AN1-type domain 6
known_NIR_18079	chr7	84283617	84328552	-	84283617	84338954	A5SS	ENSMUST00000209117.2	known	0.00	0	138	0	138	n	0.00	0	87	0	87	n	0.00	0	158	0	158	n	0.00	0	184	0	184	n	0.00	0	223	0	223	n	0.00	0	140	0	140	n	0.01	2	169	2	169	y	0.00	0	100	0	100	n	0.00	0	149	0	149	n	0.00	0	222	0	222	n	0.00	0	147	0	147	n	0.00	0	139	0	139	n	ENSMUSG00000030629.16	Zfand6	chr7	protein_coding	zinc finger, AN1-type domain 6
known_NIR_18080	chr7	84283617;84302250	84302090;84338954	-	84283617	84338954	cassetteExon	ENSMUST00000209117.2	known	0.02	3.0	138	6;0	138	n	0.04	4.0	87	4;4	87	y	0.03	5.5	158	8;3	158	y	0.03	5.0	184	8;2	184	y	0.03	6.0	223	10;2	223	y	0.04	6.5	140	11;2	140	y	0.05	8.5	169	8;9	169	y	0.06	6.0	100	8;4	100	y	0.01	1.5	149	2;1	149	n	0.05	11.5	222	20;3	222	y	0.07	11.0	147	16;6	147	y	0.06	8.5	139	14;3	139	y	ENSMUSG00000030629.16	Zfand6	chr7	protein_coding	zinc finger, AN1-type domain 6
known_NIR_18081	chr7	86896791	86944996	+	86896791	86944992	A3SS	ENSMUST00000124057.8	known	0.45	19	23	19	23	y	0.25	3	9	3	9	y	0.10	1	9	1	9	n	0.33	16	33	16	33	y	0.40	19	29	19	29	y	0.50	4	4	4	4	n	0.33	15	31	15	31	y	0.48	11	12	11	12	y	0.37	10	17	10	17	y	0.29	17	42	17	42	y	0.34	10	19	10	19	y	0.33	16	32	16	32	y	ENSMUSG00000030562.18	Nox4	chr7	protein_coding	NADPH oxidase 4
known_NIR_18082	chr7	87927582	87930598	+	87927582	87930595	A3SS	ENSMUST00000032779.12	known	0.02	6	335	6	335	y	0.02	5	254	5	254	y	0.02	7	448	7	448	y	0.01	5	422	5	422	y	0.01	8	549	8	549	y	0.02	3	138	3	138	y	0.02	8	357	8	357	y	0.00	0	265	0	265	n	0.01	4	304	4	304	y	0.00	0	445	0	445	n	0.03	8	272	8	272	y	0.03	11	386	11	386	y	ENSMUSG00000030560.18	Ctsc	chr7	protein_coding	cathepsin C
known_NIR_18083	chr7	87930740	87936102	+	87930740	87946291	A3SS	ENSMUST00000032779.12	known	0.06	21	309	21	309	y	0.07	22	295	22	295	y	0.10	49	441	49	441	y	0.14	60	361	60	361	y	0.13	74	482	74	482	y	0.16	27	139	27	139	y	0.14	61	384	61	384	y	0.18	54	254	54	254	y	0.18	63	282	63	282	y	0.09	47	456	47	456	y	0.15	54	296	54	296	y	0.16	74	384	74	384	y	ENSMUSG00000030560.18	Ctsc	chr7	protein_coding	cathepsin C
known_NIR_18084	chr7	88797017	88797178	-	88793963	88797178	A3SS	ENSMUST00000041968.11	known	0.00	0	144	0	144	n	0.00	0	90	0	90	n	0.00	0	135	0	135	n	0.00	0	164	0	164	n	0.00	0	207	0	207	n	0.03	2	70	2	70	y	0.01	1	166	1	166	n	0.00	0	111	0	111	n	0.00	0	137	0	137	n	0.00	0	225	0	225	n	0.00	0	160	0	160	n	0.01	2	192	2	192	y	ENSMUSG00000039428.12	Tmem135	chr7	protein_coding	transmembrane protein 135
known_NIR_18085	chr7	88956472	89053281	-	88956472	88987656	5pMXE	ENSMUST00000041968.11	known	0.18	12	56	12	56	y	0.00	0	21	0	21	n	0.14	8	50	8	50	y	0.06	5	81	5	81	y	0.03	3	103	3	103	y	0.08	3	36	3	36	y	0.12	10	76	10	76	y	0.04	2	49	2	49	y	0.00	0	74	0	74	n	0.06	6	92	6	92	y	0.13	8	55	8	55	y	0.06	5	83	5	83	y	ENSMUSG00000039428.12	Tmem135	chr7	protein_coding	transmembrane protein 135
known_NIR_18086	chr7	89569399	89584935	-	89569399	89572772	5pMXE	ENSMUST00000150740.2	known	0.02	3	140	3	140	y	0.06	6	103	6	103	y	0.07	4	54	4	54	y	0.03	4	135	4	135	y	0.02	3	127	3	127	y	0.00	0	38	0	38	n	0.05	6	127	6	127	y	0.05	2	42	2	42	y	0.01	1	69	1	69	n	0.06	7	106	7	106	y	0.04	4	99	4	99	y	0.01	2	138	2	138	y	ENSMUSG00000062797.15	Hikeshi	chr7	protein_coding	heat shock protein nuclear import factor
known_NIR_18087	chr7	89569399	89584935	-	89569399;89572923	89572772;89584935	ES	ENSMUST00000153470.9	known	0.03	3	108.0	3	140;76	y	0.07	6	86.0	6	103;69	y	0.07	4	53.5	4	54;53	y	0.04	4	104.5	4	135;74	y	0.03	3	102.5	3	127;78	y	0.00	0	41.5	0	38;45	n	0.05	6	112.0	6	127;97	y	0.05	2	35.5	2	42;29	y	0.02	1	59.0	1	69;49	n	0.06	7	101.0	7	106;96	y	0.04	4	88.5	4	99;78	y	0.02	2	111.0	2	138;84	y	ENSMUSG00000062797.15	Hikeshi	chr7	protein_coding	heat shock protein nuclear import factor
known_NIR_18088	chr7	89569399;89572923	89572772;89590177	-	89569399;89585172	89584935;89590177	MXE	ENSMUST00000207309.2	known	0.70	73.0	31.0	140;6	3;59	y	0.64	53.0	29.5	103;3	6;53	y	0.56	30.5	23.5	54;7	4;43	y	0.64	69.0	38.5	135;3	4;73	y	0.64	69.5	38.5	127;12	3;74	y	0.56	20.0	15.5	38;2	0;31	n	0.66	69.0	36.0	127;11	6;66	y	0.58	22.5	16.5	42;3	2;31	y	0.53	36.5	33.0	69;4	1;65	n	0.62	58.0	35.5	106;10	7;64	y	0.67	53.0	26.5	99;7	4;49	y	0.69	73.0	33.5	138;8	2;65	y	ENSMUSG00000062797.15	Hikeshi	chr7	protein_coding	heat shock protein nuclear import factor
known_NIR_18089	chr7	89572923	89590177	-	89572923;89585172	89584935;89590177	ES	ENSMUST00000153470.9	known	0.08	6	67.5	6	76;59	y	0.05	3	61.0	3	69;53	y	0.13	7	48.0	7	53;43	y	0.04	3	73.5	3	74;73	y	0.14	12	76.0	12	78;74	y	0.05	2	38.0	2	45;31	y	0.12	11	81.5	11	97;66	y	0.09	3	30.0	3	29;31	y	0.07	4	57.0	4	49;65	y	0.11	10	80.0	10	96;64	y	0.10	7	63.5	7	78;49	y	0.10	8	74.5	8	84;65	y	ENSMUSG00000062797.15	Hikeshi	chr7	protein_coding	heat shock protein nuclear import factor
known_NIR_18090	chr7	89604812	89605552	-	89604812	89605463	A5SS	ENSMUST00000238981.2	known	0.11	5	40	5	40	y	0.10	7	62	7	62	y	0.06	4	62	4	62	y	0.03	1	33	1	33	n	0.12	6	45	6	45	y	0.07	2	25	2	25	y	0.21	16	59	16	59	y	0.00	0	23	0	23	n	0.15	8	44	8	44	y	0.14	11	66	11	66	y	0.16	7	38	7	38	y	0.15	10	58	10	58	y	ENSMUSG00000030619.11	Eed	chr7	protein_coding	embryonic ectoderm development
known_NIR_18091	chr7	89774240;89776252	89776136;89779080	-	89774240	89779080	cassetteExon	ENSMUST00000209166.2	known	0.35	23.0	43	25;21	43	y	0.43	29.5	39	32;27	39	y	0.49	21.0	22	27;15	22	y	0.42	25.0	35	29;21	35	y	0.40	38.0	57	47;29	57	y	0.40	10.5	16	12;9	16	y	0.36	25.0	44	26;24	44	y	0.58	29.5	21	37;22	21	y	0.48	20.5	22	23;18	22	y	0.51	35.5	34	38;33	34	y	0.42	33.0	46	39;27	46	y	0.36	24.5	44	31;18	44	y	ENSMUSG00000097162.3	2310010J17Rik	chr7	lncRNA	RIKEN cDNA 2310010J17 gene
known_NIR_18092	chr7	89776252	89776805	-	89776252	89779080	A5SS	ENSMUST00000209164.2	known	0.22	6	21	6	21	y	0.21	7	27	7	27	y	0.25	5	15	5	15	y	0.30	9	21	9	21	y	0.19	7	29	7	29	y	0.36	5	9	5	9	y	0.31	11	24	11	24	y	0.04	1	22	1	22	n	0.18	4	18	4	18	y	0.11	4	33	4	33	y	0.13	4	27	4	27	y	0.18	4	18	4	18	y	ENSMUSG00000097162.3	2310010J17Rik	chr7	lncRNA	RIKEN cDNA 2310010J17 gene
known_NIR_18093	chr7	89826811;89831576	89831427;89838358	+	89826811	89838358	cassetteExon	ENSMUST00000207225.2	known	0.44	41.0	52	32;50	52	y	0.41	34.0	48	22;46	48	y	0.54	145.5	124	142;149	124	y	0.35	46.0	85	26;66	85	y	0.31	57.0	129	48;66	129	y	0.40	52.5	78	36;69	78	y	0.42	60.0	82	52;68	82	y	0.39	43.0	68	35;51	68	y	0.39	40.0	63	37;43	63	y	0.42	71.5	98	61;82	98	y	0.43	48.5	63	46;51	63	y	0.48	67.0	74	62;72	74	y	ENSMUSG00000039361.12	Picalm	chr7	protein_coding	phosphatidylinositol binding clathrin assembly protein
known_NIR_18094	chr7	89838465	89840349	+	89838465	89840364	A3SS	ENSMUST00000207225.2	known	0.29	28	70	28	70	y	0.26	24	69	24	69	y	0.17	49	244	49	244	y	0.31	43	94	43	94	y	0.19	39	166	39	166	y	0.24	30	96	30	96	y	0.26	41	114	41	114	y	0.25	25	76	25	76	y	0.20	19	77	19	77	y	0.21	36	135	36	135	y	0.19	20	85	20	85	y	0.26	34	98	34	98	y	ENSMUSG00000039361.12	Picalm	chr7	protein_coding	phosphatidylinositol binding clathrin assembly protein
known_NIR_18095	chr7	89840961;89843504	89843481;89844863	+	89840961	89844863	cassetteExon	ENSMUST00000207225.2	known	0.86	119.5	19	116;123	19	y	0.83	90.5	19	96;85	19	y	0.87	230.5	35	238;223	35	y	0.82	125.5	28	125;126	28	y	0.77	148.5	44	157;140	44	y	0.84	92.0	17	102;82	17	y	0.77	144.5	42	148;141	42	y	0.84	87.0	16	95;79	16	y	0.85	105.0	18	108;102	18	y	0.78	141.5	40	141;142	40	y	0.84	130.5	24	132;129	24	y	0.85	126.0	22	130;122	22	y	ENSMUSG00000039361.12	Picalm	chr7	protein_coding	phosphatidylinositol binding clathrin assembly protein
known_NIR_18096	chr7	89846228;89855469	89855368;89856791	+	89846228	89856791	cassetteExon	ENSMUST00000207225.2	known	0.04	6.5	146	8;5	146	y	0.02	2.5	131	4;1	131	n	0.02	7.5	295	10;5	295	y	0.03	5.0	149	8;2	149	y	0.03	8.5	237	5;12	237	y	0.01	1.0	148	0;2	148	n	0.04	10.0	216	10;10	216	y	0.02	2.0	125	1;3	125	n	0.02	2.5	141	4;1	141	n	0.05	9.0	189	9;9	189	y	0.03	5.0	185	4;6	185	y	0.01	1.5	186	1;2	186	n	ENSMUSG00000039361.12	Picalm	chr7	protein_coding	phosphatidylinositol binding clathrin assembly protein
known_NIR_18097	chr7	90093410	90093508	+	90093295	90093508	A5SS	ENSMUST00000107206.3	known	0.00	0	7	0	7	n	0.10	2	19	2	19	y	0.11	2	16	2	16	y	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	21	0	21	n	0.14	1	6	1	6	n	0.00	0	17	0	17	n	0.00	0	16	0	16	n	0.05	1	21	1	21	n	0.00	0	19	0	19	n	ENSMUSG00000051451.7	Crebzf	chr7	protein_coding	CREB/ATF bZIP transcription factor
known_NIR_18098	chr7	90093585	90094633	+	90093585	90093826	3pMXE	ENSMUST00000126041.2	known	1.00	27	0	27	0	n	1.00	31	0	31	0	n	1.00	31	0	31	0	n	1.00	34	0	34	0	n	0.95	53	3	53	3	y	1.00	20	0	20	0	n	0.95	38	2	38	2	y	1.00	16	0	16	0	n	1.00	44	0	44	0	n	1.00	31	0	31	0	n	0.94	30	2	30	2	y	1.00	47	0	47	0	n	ENSMUSG00000051451.7	Crebzf	chr7	protein_coding	CREB/ATF bZIP transcription factor
known_NIR_18099	chr7	90093585	90094633	+	90093940	90094633	5pMXE	ENSMUST00000146291.2	known	1.00	27	0	27	0	n	1.00	31	0	31	0	n	1.00	31	0	31	0	n	1.00	34	0	34	0	n	1.00	53	0	53	0	n	0.91	20	2	20	2	y	1.00	38	0	38	0	n	1.00	16	0	16	0	n	1.00	44	0	44	0	n	1.00	31	0	31	0	n	1.00	30	0	30	0	n	1.00	47	0	47	0	n	ENSMUSG00000051451.7	Crebzf	chr7	protein_coding	CREB/ATF bZIP transcription factor
known_NIR_18100	chr7	90100865	90101915	-	90100865	90101937	A5SS	ENSMUST00000136652.8	known	0.79	147	40	147	40	y	0.81	164	39	164	39	y	0.83	149	30	149	30	y	0.74	145	51	145	51	y	0.80	165	41	165	41	y	0.82	99	22	99	22	y	0.79	177	47	177	47	y	0.84	81	15	81	15	y	0.72	99	38	99	38	y	0.79	214	57	214	57	y	0.82	153	33	153	33	y	0.81	204	47	204	47	y	ENSMUSG00000030615.13	Tmem126a	chr7	protein_coding	transmembrane protein 126A
known_NIR_18101	chr7	90100865	90104632	-	90100865;90102108	90101915;90104632	ES	ENSMUST00000032844.7	known	0.02	4	163.5	4	147;180	y	0.02	3	154.5	3	164;145	y	0.02	3	158.0	3	149;167	y	0.06	10	153.0	10	145;161	y	0.06	11	183.5	11	165;202	y	0.05	5	105.0	5	99;111	y	0.03	5	195.0	5	177;213	y	0.01	1	94.0	1	81;107	n	0.04	6	138.0	6	99;177	y	0.02	5	236.5	5	214;259	y	0.03	5	183.5	5	153;214	y	0.06	13	216.5	13	204;229	y	ENSMUSG00000030615.13	Tmem126a	chr7	protein_coding	transmembrane protein 126A
known_NIR_18102	chr7	90100865	90104632	-	90100865;90102108	90101937;90104632	ES	ENSMUST00000136652.8	known	0.04	4	110.0	4	40;180	y	0.03	3	92.0	3	39;145	y	0.03	3	98.5	3	30;167	y	0.09	10	106.0	10	51;161	y	0.08	11	121.5	11	41;202	y	0.07	5	66.5	5	22;111	y	0.04	5	130.0	5	47;213	y	0.02	1	61.0	1	15;107	n	0.05	6	107.5	6	38;177	y	0.03	5	158.0	5	57;259	y	0.04	5	123.5	5	33;214	y	0.09	13	138.0	13	47;229	y	ENSMUSG00000030615.13	Tmem126a	chr7	protein_coding	transmembrane protein 126A
known_NIR_18103	chr7	92210843	92216830	+	92210843	92213724	3pMXE	ENSMUST00000153776.2	known	1.00	19	0	19	0	n	1.00	26	0	26	0	n	0.90	26	3	26	3	y	1.00	34	0	34	0	n	1.00	46	0	46	0	n	1.00	18	0	18	0	n	1.00	29	0	29	0	n	1.00	28	0	28	0	n	1.00	10	0	10	0	n	1.00	30	0	30	0	n	1.00	19	0	19	0	n	0.97	33	1	33	1	n	ENSMUSG00000030613.14	Ccdc90b	chr7	protein_coding	coiled-coil domain containing 90B
known_NIR_18104	chr7	92217783	92223830	+	92217783;92221848	92221747;92223830	ES	ENSMUST00000032842.13	known	0.09	5	48.0	5	54;42	y	0.05	2	34.5	2	45;24	y	0.09	4	42.5	4	47;38	y	0.00	0	43.5	0	50;37	n	0.08	3	35.0	3	36;34	y	0.13	3	20.5	3	23;18	y	0.06	3	45.5	3	51;40	y	0.06	2	31.0	2	35;27	y	0.25	8	23.5	8	34;13	y	0.12	6	45.0	6	57;33	y	0.10	3	26.0	3	25;27	y	0.13	6	40.5	6	40;41	y	ENSMUSG00000030613.14	Ccdc90b	chr7	protein_coding	coiled-coil domain containing 90B
known_NIR_18105	chr7	92263760	92273176	-	92263760;92268891	92268756;92273176	ES	ENSMUST00000056106.14	known	-	-	-	-	-	-	0.00	0	1.0	0	1;1	n	0.00	0	4.0	0	5;3	n	-	-	-	-	-	-	0.00	0	0.5	0	0;1	n	0.00	0	2.0	0	3;1	n	0.00	0	2.0	0	3;1	n	0.00	0	3.5	0	1;6	n	0.00	0	1.5	0	3;0	n	0.33	2	4.0	2	5;3	y	-	-	-	-	-	-	0.00	0	3.0	0	2;4	n	ENSMUSG00000041343.20	Ankrd42	chr7	protein_coding	ankyrin repeat domain 42
known_NIR_18106	chr7	92308074	92308613	-	92308074	92309006	A5SS	ENSMUST00000119954.9	known	0.09	1	10	1	10	n	0.14	2	12	2	12	y	0.38	10	16	10	16	y	0.13	3	20	3	20	y	0.33	5	10	5	10	y	0.00	0	6	0	6	n	0.30	7	16	7	16	y	0.06	1	16	1	16	n	0.29	5	12	5	12	y	0.07	2	25	2	25	y	0.33	4	8	4	8	y	0.35	6	11	6	11	y	ENSMUSG00000041328.17	Pcf11	chr7	protein_coding	PCF11 cleavage and polyadenylation factor subunit
known_NIR_18107	chr7	92469291	92473022	+	92469291	92473006	A3SS	ENSMUST00000032879.15	known	0.00	0	20	0	20	n	0.09	2	21	2	21	y	0.02	2	115	2	115	y	0.00	0	23	0	23	n	0.00	0	34	0	34	n	0.03	2	56	2	56	y	0.05	2	42	2	42	y	0.02	1	50	1	50	n	0.00	0	14	0	14	n	0.02	1	41	1	41	n	0.00	0	18	0	18	n	0.00	0	17	0	17	n	ENSMUSG00000030643.15	Rab30	chr7	protein_coding	RAB30, member RAS oncogene family
known_NIR_18108	chr7	96600862	96605151	+	96601151	96605151	A5SS	ENSMUST00000044466.12	known	0.04	1	25	1	25	n	0.00	0	19	0	19	n	0.04	1	27	1	27	n	0.03	1	31	1	31	n	0.02	1	44	1	44	n	0.00	0	22	0	22	n	0.00	0	20	0	20	n	0.00	0	19	0	19	n	0.07	2	25	2	25	y	0.02	1	41	1	41	n	0.00	0	28	0	28	n	0.00	0	27	0	27	n	ENSMUSG00000018995.13	Nars2	chr7	protein_coding	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)
known_NIR_18109	chr7	96680643	96680758	+	96680643	96680753	A3SS	ENSMUST00000044466.12	known	0.05	2	38	2	38	y	0.00	0	16	0	16	n	0.00	0	16	0	16	n	0.00	0	34	0	34	n	0.00	0	58	0	58	n	0.17	2	10	2	10	y	0.03	1	38	1	38	n	0.00	0	18	0	18	n	0.06	2	34	2	34	y	0.03	2	63	2	63	y	0.04	2	49	2	49	y	0.00	0	49	0	49	n	ENSMUSG00000018995.13	Nars2	chr7	protein_coding	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)
known_NIR_18110	chr7	96684504	96706655	+	96684504;96689243	96689106;96706655	ES	ENSMUST00000044466.12	known	0.00	0	54.5	0	50;59	n	0.00	0	31.5	0	35;28	n	0.06	2	29.5	2	42;17	y	0.02	1	58.5	1	55;62	n	0.04	2	44.5	2	45;44	y	0.00	0	15.0	0	18;12	n	0.04	2	46.0	2	46;46	y	0.04	1	22.5	1	24;21	n	0.02	1	49.5	1	45;54	n	0.06	4	64.0	4	54;74	y	0.00	0	51.5	0	53;50	n	0.00	0	58.5	0	62;55	n	ENSMUSG00000018995.13	Nars2	chr7	protein_coding	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)
known_NIR_18111	chr7	96684504	96706655	+	96689243	96706655	5pMXE	ENSMUST00000150681.3	known	0.00	0	59	0	59	n	0.00	0	28	0	28	n	0.11	2	17	2	17	y	0.02	1	62	1	62	n	0.04	2	44	2	44	y	0.00	0	12	0	12	n	0.04	2	46	2	46	y	0.05	1	21	1	21	n	0.02	1	54	1	54	n	0.05	4	74	4	74	y	0.00	0	50	0	50	n	0.00	0	55	0	55	n	ENSMUSG00000018995.13	Nars2	chr7	protein_coding	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)
known_NIR_18112	chr7	96709080	96711776	+	96709019	96711776	A5SS	ENSMUST00000044466.12	known	0.04	2	48	2	48	y	0.14	5	32	5	32	y	0.09	3	29	3	29	y	0.00	0	53	0	53	n	0.03	1	37	1	37	n	0.00	0	11	0	11	n	0.05	3	52	3	52	y	0.00	0	22	0	22	n	0.03	2	59	2	59	y	0.13	9	61	9	61	y	0.05	3	63	3	63	y	0.04	3	72	3	72	y	ENSMUSG00000018995.13	Nars2	chr7	protein_coding	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)
known_NIR_18113	chr7	97036148	97037690	+	97036148	97037656	A3SS	ENSMUST00000098300.6	known	0.24	6	19	6	19	y	0.39	12	19	12	19	y	0.09	5	52	5	52	y	0.14	4	25	4	25	y	0.09	5	50	5	50	y	0.15	8	44	8	44	y	0.06	2	32	2	32	y	0.05	2	35	2	35	y	0.00	0	28	0	28	n	0.25	7	21	7	21	y	0.30	7	16	7	16	y	0.07	3	38	3	38	y	ENSMUSG00000035704.18	Alg8	chr7	protein_coding	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)
known_NIR_18114	chr7	97199948	97214358	-	97199948;97207433	97207338;97214358	ES	ENSMUST00000178078.8	known	0.34	38	73.0	38	72;74	y	0.22	25	87.5	25	75;100	y	0.43	15	20.0	15	24;16	y	0.28	30	76.0	30	85;67	y	0.30	31	71.5	31	65;78	y	0.28	7	18.0	7	13;23	y	0.29	35	85.5	35	83;88	y	0.31	8	17.5	8	20;15	y	0.25	21	63.0	21	62;64	y	0.26	36	100.0	36	98;102	y	0.23	22	73.5	22	76;71	y	0.25	28	83.0	28	83;83	y	ENSMUSG00000035642.17	Aamdc	chr7	protein_coding	adipogenesis associated Mth938 domain containing
known_NIR_18115	chr7	97199948	97224795	-	97199948	97207338	A5SS&ES	ENSMUST00000146605.8	known	0.12	10	72	10	72	y	0.06	5	75	5	75	y	0.08	2	24	2	24	y	0.09	8	85	8	85	y	0.18	14	65	14	65	y	0.24	4	13	4	13	y	0.13	12	83	12	83	y	0.17	4	20	4	20	y	0.15	11	62	11	62	y	0.08	9	98	9	98	y	0.07	6	76	6	76	y	0.12	11	83	11	83	y	ENSMUSG00000035642.17	Aamdc	chr7	protein_coding	adipogenesis associated Mth938 domain containing
known_NIR_18116	chr7	97199948	97224795	-	97199948;97214507	97214358;97224795	ES	ENSMUST00000042627.16	known	0.19	10	44.0	10	38;50	y	0.13	5	34.5	5	25;44	y	0.11	2	17.0	2	15;19	y	0.14	8	50.5	8	30;71	y	0.24	14	44.0	14	31;57	y	0.29	4	10.0	4	7;13	y	0.20	12	49.0	12	35;63	y	0.20	4	16.0	4	8;24	y	0.25	11	33.5	11	21;46	y	0.14	9	56.0	9	36;76	y	0.14	6	38.0	6	22;54	y	0.21	11	42.5	11	28;57	y	ENSMUSG00000035642.17	Aamdc	chr7	protein_coding	adipogenesis associated Mth938 domain containing
known_NIR_18117	chr7	97199948	97228573	-	97199948	97207338	A5SS&ES	ENSMUST00000146605.8	known	0.05	4	72	4	72	y	0.10	8	75	8	75	y	0.00	0	24	0	24	n	0.06	5	85	5	85	y	0.11	8	65	8	65	y	0.00	0	13	0	13	n	0.09	8	83	8	83	y	0.05	1	20	1	20	n	0.07	5	62	5	62	y	0.07	7	98	7	98	y	0.05	4	76	4	76	y	0.11	10	83	10	83	y	ENSMUSG00000035642.17	Aamdc	chr7	protein_coding	adipogenesis associated Mth938 domain containing
known_NIR_18118	chr7	97199948;97207433	97207338;97228573	-	97199948	97228573	cassetteExon	ENSMUST00000140805.2	known	0.90	36.0	4	72;0	4	n	0.83	39.5	8	75;4	8	y	1.00	12.0	0	24;0	0	n	0.89	42.5	5	85;0	5	n	0.80	33.0	8	65;1	8	n	1.00	6.5	0	13;0	0	n	0.84	42.0	8	83;1	8	n	0.91	10.0	1	20;0	1	n	0.87	33.0	5	62;4	5	y	0.88	50.0	7	98;2	7	y	0.91	39.0	4	76;2	4	y	0.81	42.5	10	83;2	10	y	ENSMUSG00000035642.17	Aamdc	chr7	protein_coding	adipogenesis associated Mth938 domain containing
known_NIR_18119	chr7	97199948;97207433	97207338;97228573	-	97199948;97224898	97214358;97228573	MXE	ENSMUST00000072725.12	known	0.44	36.0	45.0	72;0	38;52	n	0.42	39.5	54.5	75;4	25;84	y	0.36	12.0	21.0	24;0	15;27	n	0.45	42.5	52.5	85;0	30;75	n	0.36	33.0	59.0	65;1	31;87	n	0.25	6.5	19.5	13;0	7;32	n	0.40	42.0	62.0	83;1	35;89	n	0.27	10.0	26.5	20;0	8;45	n	0.45	33.0	41.0	62;4	21;61	y	0.41	50.0	71.0	98;2	36;106	y	0.38	39.0	65.0	76;2	22;108	y	0.46	42.5	50.5	83;2	28;73	y	ENSMUSG00000035642.17	Aamdc	chr7	protein_coding	adipogenesis associated Mth938 domain containing
known_NIR_18120	chr7	97199948;97214507	97214358;97228573	-	97199948	97228573	cassetteExon	ENSMUST00000140805.2	known	0.91	40.5	4	38;43	4	y	0.79	30.0	8	25;35	8	y	1.00	14.0	0	15;13	0	n	0.87	32.5	5	30;35	5	y	0.79	30.0	8	31;29	8	y	1.00	9.0	0	7;11	0	n	0.79	31.0	8	35;27	8	y	0.91	10.5	1	8;13	1	n	0.83	25.0	5	21;29	5	y	0.85	40.5	7	36;45	7	y	0.89	34.0	4	22;46	4	y	0.75	29.5	10	28;31	10	y	ENSMUSG00000035642.17	Aamdc	chr7	protein_coding	adipogenesis associated Mth938 domain containing
known_NIR_18121	chr7	97199948;97214507	97214358;97228573	-	97199948;97207433	97207338;97228573	MXE	ENSMUST00000124552.3	known	0.53	40.5	36.0	38;43	72;0	n	0.43	30.0	39.5	25;35	75;4	y	0.54	14.0	12.0	15;13	24;0	n	0.43	32.5	42.5	30;35	85;0	n	0.48	30.0	33.0	31;29	65;1	n	0.58	9.0	6.5	7;11	13;0	n	0.42	31.0	42.0	35;27	83;1	n	0.51	10.5	10.0	8;13	20;0	n	0.43	25.0	33.0	21;29	62;4	y	0.45	40.5	50.0	36;45	98;2	y	0.47	34.0	39.0	22;46	76;2	y	0.41	29.5	42.5	28;31	83;2	y	ENSMUSG00000035642.17	Aamdc	chr7	protein_coding	adipogenesis associated Mth938 domain containing
known_NIR_18122	chr7	97199948;97214507	97214358;97228573	-	97199948;97224898	97224795;97228573	MXE	ENSMUST00000144858.8	known	0.57	40.5	31.0	38;43	10;52	y	0.40	30.0	44.5	25;35	5;84	y	0.49	14.0	14.5	15;13	2;27	y	0.44	32.5	41.5	30;35	8;75	y	0.37	30.0	50.5	31;29	14;87	y	0.33	9.0	18.0	7;11	4;32	y	0.38	31.0	50.5	35;27	12;89	y	0.30	10.5	24.5	8;13	4;45	y	0.41	25.0	36.0	21;29	11;61	y	0.41	40.5	57.5	36;45	9;106	y	0.37	34.0	57.0	22;46	6;108	y	0.41	29.5	42.0	28;31	11;73	y	ENSMUSG00000035642.17	Aamdc	chr7	protein_coding	adipogenesis associated Mth938 domain containing
known_NIR_18123	chr7	97199948;97224898	97224795;97228573	-	97199948	97228573	cassetteExon	ENSMUST00000140805.2	known	0.89	31.0	4	10;52	4	y	0.85	44.5	8	5;84	8	y	1.00	14.5	0	2;27	0	n	0.89	41.5	5	8;75	5	y	0.86	50.5	8	14;87	8	y	1.00	18.0	0	4;32	0	n	0.86	50.5	8	12;89	8	y	0.96	24.5	1	4;45	1	n	0.88	36.0	5	11;61	5	y	0.89	57.5	7	9;106	7	y	0.93	57.0	4	6;108	4	y	0.81	42.0	10	11;73	10	y	ENSMUSG00000035642.17	Aamdc	chr7	protein_coding	adipogenesis associated Mth938 domain containing
known_NIR_18124	chr7	97199948;97224898	97224795;97228573	-	97199948;97207433	97207338;97228573	MXE	ENSMUST00000124552.3	known	0.46	31.0	36.0	10;52	72;0	n	0.53	44.5	39.5	5;84	75;4	y	0.55	14.5	12.0	2;27	24;0	n	0.49	41.5	42.5	8;75	85;0	n	0.60	50.5	33.0	14;87	65;1	n	0.73	18.0	6.5	4;32	13;0	n	0.55	50.5	42.0	12;89	83;1	n	0.71	24.5	10.0	4;45	20;0	n	0.52	36.0	33.0	11;61	62;4	y	0.53	57.5	50.0	9;106	98;2	y	0.59	57.0	39.0	6;108	76;2	y	0.50	42.0	42.5	11;73	83;2	y	ENSMUSG00000035642.17	Aamdc	chr7	protein_coding	adipogenesis associated Mth938 domain containing
known_NIR_18125	chr7	97199948;97224898	97224795;97228573	-	97199948;97214507	97207338;97228573	MXE	ENSMUST00000136757.8	known	0.35	31.0	57.5	10;52	72;43	y	0.45	44.5	55.0	5;84	75;35	y	0.44	14.5	18.5	2;27	24;13	y	0.41	41.5	60.0	8;75	85;35	y	0.52	50.5	47.0	14;87	65;29	y	0.60	18.0	12.0	4;32	13;11	y	0.48	50.5	55.0	12;89	83;27	y	0.60	24.5	16.5	4;45	20;13	y	0.44	36.0	45.5	11;61	62;29	y	0.45	57.5	71.5	9;106	98;45	y	0.48	57.0	61.0	6;108	76;46	y	0.42	42.0	57.0	11;73	83;31	y	ENSMUSG00000035642.17	Aamdc	chr7	protein_coding	adipogenesis associated Mth938 domain containing
known_NIR_18126	chr7	97207433	97228573	-	97207433	97214358	A5SS&ES	ENSMUST00000146605.8	known	0.00	0	74	0	74	n	0.04	4	100	4	100	y	0.00	0	16	0	16	n	0.00	0	67	0	67	n	0.01	1	78	1	78	n	0.00	0	23	0	23	n	0.01	1	88	1	88	n	0.00	0	15	0	15	n	0.06	4	64	4	64	y	0.02	2	102	2	102	y	0.03	2	71	2	71	y	0.02	2	83	2	83	y	ENSMUSG00000035642.17	Aamdc	chr7	protein_coding	adipogenesis associated Mth938 domain containing
known_NIR_18127	chr7	97207433	97228573	-	97207433;97214507	97214358;97228573	ES	ENSMUST00000136757.8	known	0.00	0	58.5	0	74;43	n	0.06	4	67.5	4	100;35	y	0.00	0	14.5	0	16;13	n	0.00	0	51.0	0	67;35	n	0.02	1	53.5	1	78;29	n	0.00	0	17.0	0	23;11	n	0.02	1	57.5	1	88;27	n	0.00	0	14.0	0	15;13	n	0.08	4	46.5	4	64;29	y	0.03	2	73.5	2	102;45	y	0.03	2	58.5	2	71;46	y	0.03	2	57.0	2	83;31	y	ENSMUSG00000035642.17	Aamdc	chr7	protein_coding	adipogenesis associated Mth938 domain containing
known_NIR_18128	chr7	97214507	97217659	-	97214507	97228573	A5SS	ENSMUST00000136757.8	known	0.04	2	43	2	43	y	0.00	0	35	0	35	n	0.00	0	13	0	13	n	0.03	1	35	1	35	n	0.00	0	29	0	29	n	0.00	0	11	0	11	n	0.00	0	27	0	27	n	0.00	0	13	0	13	n	0.00	0	29	0	29	n	0.00	0	45	0	45	n	0.00	0	46	0	46	n	0.00	0	31	0	31	n	ENSMUSG00000035642.17	Aamdc	chr7	protein_coding	adipogenesis associated Mth938 domain containing
known_NIR_18129	chr7	97214507	97218894	-	97214507	97228573	A5SS	ENSMUST00000136757.8	known	0.35	23	43	23	43	y	0.19	8	35	8	35	y	0.46	11	13	11	13	y	0.17	7	35	7	35	y	0.36	16	29	16	29	y	0.27	4	11	4	11	y	0.29	11	27	11	27	y	0.48	12	13	12	13	y	0.12	4	29	4	29	y	0.31	20	45	20	45	y	0.15	8	46	8	46	y	0.18	7	31	7	31	y	ENSMUSG00000035642.17	Aamdc	chr7	protein_coding	adipogenesis associated Mth938 domain containing
known_NIR_18130	chr7	97214507	97228573	-	97214507	97224795	5pMXE	ENSMUST00000178078.8	known	0.46	43	50	43	50	y	0.44	35	44	35	44	y	0.41	13	19	13	19	y	0.33	35	71	35	71	y	0.34	29	57	29	57	y	0.46	11	13	11	13	y	0.30	27	63	27	63	y	0.35	13	24	13	24	y	0.39	29	46	29	46	y	0.37	45	76	45	76	y	0.46	46	54	46	54	y	0.35	31	57	31	57	y	ENSMUSG00000035642.17	Aamdc	chr7	protein_coding	adipogenesis associated Mth938 domain containing
known_NIR_18131	chr7	97214507;97218981	97218894;97224795	-	97214507	97224795	cassetteExon	ENSMUST00000178078.8	known	0.28	19.0	50	23;15	50	y	0.15	8.0	44	8;8	44	y	0.33	9.5	19	11;8	19	y	0.13	11.0	71	7;15	71	y	0.26	20.0	57	16;24	57	y	0.35	7.0	13	4;10	13	y	0.15	11.5	63	11;12	63	y	0.28	9.5	24	12;7	24	y	0.11	5.5	46	4;7	46	y	0.20	19.5	76	20;19	76	y	0.11	6.5	54	8;5	54	y	0.16	11.0	57	7;15	57	y	ENSMUSG00000035642.17	Aamdc	chr7	protein_coding	adipogenesis associated Mth938 domain containing
known_NIR_18132	chr7	97214507;97224898	97224795;97228573	-	97214507	97228573	cassetteExon	ENSMUST00000136757.8	known	0.54	51.0	43	50;52	43	y	0.65	64.0	35	44;84	35	y	0.64	23.0	13	19;27	13	y	0.68	73.0	35	71;75	35	y	0.71	72.0	29	57;87	29	y	0.67	22.5	11	13;32	11	y	0.74	76.0	27	63;89	27	y	0.73	34.5	13	24;45	13	y	0.65	53.5	29	46;61	29	y	0.67	91.0	45	76;106	45	y	0.64	81.0	46	54;108	46	y	0.68	65.0	31	57;73	31	y	ENSMUSG00000035642.17	Aamdc	chr7	protein_coding	adipogenesis associated Mth938 domain containing
known_NIR_18133	chr7	97218981	97224795	-	97199948	97224795	A3SS	ENSMUST00000144858.8	known	0.60	15	10	15	10	y	0.62	8	5	8	5	y	0.80	8	2	8	2	y	0.65	15	8	15	8	y	0.63	24	14	24	14	y	0.71	10	4	10	4	y	0.50	12	12	12	12	y	0.64	7	4	7	4	y	0.39	7	11	7	11	y	0.68	19	9	19	9	y	0.45	5	6	5	6	y	0.58	15	11	15	11	y	ENSMUSG00000035642.17	Aamdc	chr7	protein_coding	adipogenesis associated Mth938 domain containing
known_NIR_18134	chr7	97227971	97228573	-	97199948	97228573	A3SS	ENSMUST00000140805.2	known	0.00	0	4	0	4	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.11	1	8	1	8	n	-	-	-	-	-	-	0.27	3	8	3	8	y	0.00	0	1	0	1	n	0.17	1	5	1	5	n	0.12	1	7	1	7	n	0.00	0	4	0	4	n	0.09	1	10	1	10	n	ENSMUSG00000035642.17	Aamdc	chr7	protein_coding	adipogenesis associated Mth938 domain containing
known_NIR_18135	chr7	97227971	97228573	-	97214507	97228573	A3SS	ENSMUST00000136757.8	known	0.00	0	43	0	43	n	0.00	0	35	0	35	n	0.00	0	13	0	13	n	0.00	0	35	0	35	n	0.03	1	29	1	29	n	0.00	0	11	0	11	n	0.10	3	27	3	27	y	0.00	0	13	0	13	n	0.03	1	29	1	29	n	0.02	1	45	1	45	n	0.00	0	46	0	46	n	0.03	1	31	1	31	n	ENSMUSG00000035642.17	Aamdc	chr7	protein_coding	adipogenesis associated Mth938 domain containing
known_NIR_18136	chr7	97375911	97386576	-	97375911	97378178	5pMXE	ENSMUST00000205784.2	known	0.01	2	136	2	136	y	0.02	3	134	3	134	y	0.03	1	32	1	32	n	0.01	1	122	1	122	n	0.01	1	174	1	174	n	0.00	0	31	0	31	n	0.00	0	202	0	202	n	0.02	1	44	1	44	n	0.01	1	119	1	119	n	0.01	2	185	2	185	y	0.01	1	155	1	155	n	0.01	2	168	2	168	y	ENSMUSG00000042797.10	Aqp11	chr7	protein_coding	aquaporin 11
known_NIR_18137	chr7	97375911	97386576	-	97375911;97378294	97378178;97386576	ES	ENSMUST00000206389.2	known	0.01	2	137.0	2	136;138	y	0.02	3	129.5	3	134;125	y	0.03	1	34.0	1	32;36	n	0.01	1	163.0	1	122;204	n	0.01	1	188.5	1	174;203	n	0.00	0	35.5	0	31;40	n	0.00	0	190.0	0	202;178	n	0.02	1	46.5	1	44;49	n	0.01	1	135.5	1	119;152	n	0.01	2	187.0	2	185;189	y	0.01	1	143.5	1	155;132	n	0.01	2	181.0	2	168;194	y	ENSMUSG00000042797.10	Aqp11	chr7	protein_coding	aquaporin 11
known_NIR_18138	chr7	97714988	97715548	-	97715102	97715548	A3SS	ENSMUST00000107128.8	known	0.75	3	1	3	1	n	1.00	6	0	6	0	n	0.58	7	5	7	5	y	1.00	9	0	9	0	n	0.93	14	1	14	1	n	0.73	8	3	8	3	y	0.91	10	1	10	1	n	1.00	7	0	7	0	n	1.00	19	0	19	0	n	1.00	5	0	5	0	n	0.64	7	4	7	4	y	1.00	12	0	12	0	n	ENSMUSG00000030761.17	Myo7a	chr7	protein_coding	myosin VIIA
known_NIR_18139	chr7	97906984	97910794	-	97906984;97908664	97908612;97910794	ES	ENSMUST00000033020.14	known	0.00	0	20.0	0	21;19	n	0.00	0	13.5	0	15;12	n	0.00	0	41.5	0	41;42	n	0.00	0	15.5	0	19;12	n	0.00	0	29.0	0	30;28	n	0.00	0	21.5	0	24;19	n	0.00	0	19.5	0	17;22	n	0.00	0	13.0	0	15;11	n	0.05	1	17.5	1	16;19	n	0.00	0	19.0	0	20;18	n	0.18	3	14.0	3	13;15	y	0.00	0	13.5	0	15;12	n	ENSMUSG00000030760.15	Acer3	chr7	protein_coding	alkaline ceramidase 3
known_NIR_18140	chr7	98002337	98002684	-	98002337	98010449	A5SS	ENSMUST00000206414.2	known	0.59	54	38	54	38	y	0.62	46	28	46	28	y	0.59	40	28	40	28	y	0.60	41	27	41	27	y	0.77	46	14	46	14	y	0.61	45	29	45	29	y	0.60	18	12	18	12	y	0.62	18	11	18	11	y	0.83	24	5	24	5	y	0.66	50	26	50	26	y	0.68	27	13	27	13	y	0.71	10	4	10	4	y	ENSMUSG00000049580.13	Tsku	chr7	protein_coding	tsukushi, small leucine rich proteoglycan
known_NIR_18141	chr7	98002337	98008565	-	98002337;98002823	98002684;98008565	ES	ENSMUST00000094161.11	known	0.31	18	41.0	18	54;28	y	0.33	18	36.5	18	46;27	y	0.42	21	29.0	21	40;18	y	0.34	16	31.5	16	41;22	y	0.32	19	40.0	19	46;34	y	0.28	13	33.0	13	45;21	y	0.33	8	16.5	8	18;15	y	0.12	2	14.5	2	18;11	y	0.22	5	17.5	5	24;11	y	0.19	8	33.5	8	50;17	y	0.30	10	23.0	10	27;19	y	0.17	2	9.5	2	10;9	y	ENSMUSG00000049580.13	Tsku	chr7	protein_coding	tsukushi, small leucine rich proteoglycan
known_NIR_18142	chr7	98002337	98008565	-	98002823	98008565	3pMXE	ENSMUST00000206770.2	known	0.39	18	28	18	28	y	0.40	18	27	18	27	y	0.54	21	18	21	18	y	0.42	16	22	16	22	y	0.36	19	34	19	34	y	0.38	13	21	13	21	y	0.35	8	15	8	15	y	0.15	2	11	2	11	y	0.31	5	11	5	11	y	0.32	8	17	8	17	y	0.34	10	19	10	19	y	0.18	2	9	2	9	y	ENSMUSG00000049580.13	Tsku	chr7	protein_coding	tsukushi, small leucine rich proteoglycan
known_NIR_18143	chr7	98002337	98009228	-	98002337	98002684	A5SS&ES	ENSMUST00000094161.11	known	0.04	2	54	2	54	y	0.08	4	46	4	46	y	0.13	6	40	6	40	y	0.05	2	41	2	41	y	0.06	3	46	3	46	y	0.04	2	45	2	45	y	0.00	0	18	0	18	n	0.00	0	18	0	18	n	0.00	0	24	0	24	n	0.04	2	50	2	50	y	0.10	3	27	3	27	y	0.00	0	10	0	10	n	ENSMUSG00000049580.13	Tsku	chr7	protein_coding	tsukushi, small leucine rich proteoglycan
known_NIR_18144	chr7	98002337	98009228	-	98002337	98008565	A5SS&ES	ENSMUST00000164726.8	known	0.10	2	18	2	18	y	0.18	4	18	4	18	y	0.22	6	21	6	21	y	0.11	2	16	2	16	y	0.14	3	19	3	19	y	0.13	2	13	2	13	y	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.20	2	8	2	8	y	0.23	3	10	3	10	y	0.00	0	2	0	2	n	ENSMUSG00000049580.13	Tsku	chr7	protein_coding	tsukushi, small leucine rich proteoglycan
known_NIR_18145	chr7	98002337	98010366	-	98002337	98002684	A5SS&ES	ENSMUST00000094161.11	known	0.00	0	54	0	54	n	0.00	0	46	0	46	n	0.02	1	40	1	40	n	0.00	0	41	0	41	n	0.02	1	46	1	46	n	0.00	0	45	0	45	n	0.10	2	18	2	18	y	0.00	0	18	0	18	n	0.04	1	24	1	24	n	0.00	0	50	0	50	n	0.00	0	27	0	27	n	0.00	0	10	0	10	n	ENSMUSG00000049580.13	Tsku	chr7	protein_coding	tsukushi, small leucine rich proteoglycan
known_NIR_18146	chr7	98002337	98010366	-	98002337	98008565	A5SS&ES	ENSMUST00000164726.8	known	0.00	0	18	0	18	n	0.00	0	18	0	18	n	0.05	1	21	1	21	n	0.00	0	16	0	16	n	0.05	1	19	1	19	n	0.00	0	13	0	13	n	0.20	2	8	2	8	y	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	ENSMUSG00000049580.13	Tsku	chr7	protein_coding	tsukushi, small leucine rich proteoglycan
known_NIR_18147	chr7	98002337	98010449	-	98002337	98009228	5pMXE	ENSMUST00000179780.3	known	0.95	38	2	38	2	y	0.88	28	4	28	4	y	0.82	28	6	28	6	y	0.93	27	2	27	2	y	0.82	14	3	14	3	y	0.94	29	2	29	2	y	1.00	12	0	12	0	n	1.00	11	0	11	0	n	1.00	5	0	5	0	n	0.93	26	2	26	2	y	0.81	13	3	13	3	y	1.00	4	0	4	0	n	ENSMUSG00000049580.13	Tsku	chr7	protein_coding	tsukushi, small leucine rich proteoglycan
known_NIR_18148	chr7	98002337	98010449	-	98002337	98010366	A5SS	ENSMUST00000167405.3	known	1.00	38	0	38	0	n	1.00	28	0	28	0	n	0.97	28	1	28	1	n	1.00	27	0	27	0	n	0.93	14	1	14	1	n	1.00	29	0	29	0	n	0.86	12	2	12	2	y	1.00	11	0	11	0	n	0.83	5	1	5	1	n	1.00	26	0	26	0	n	1.00	13	0	13	0	n	1.00	4	0	4	0	n	ENSMUSG00000049580.13	Tsku	chr7	protein_coding	tsukushi, small leucine rich proteoglycan
known_NIR_18149	chr7	98002337	98010449	-	98002337;98008674	98008565;98010449	ES	ENSMUST00000164726.8	known	0.73	38	14.0	38	18;10	y	0.74	28	10.0	28	18;2	y	0.70	28	12.0	28	21;3	y	0.71	27	11.0	27	16;6	y	0.48	14	15.0	14	19;11	y	0.77	29	8.5	29	13;4	y	0.67	12	6.0	12	8;4	y	0.92	11	1.0	11	2;0	n	0.59	5	3.5	5	5;2	y	0.81	26	6.0	26	8;4	y	0.67	13	6.5	13	10;3	y	0.73	4	1.5	4	2;1	n	ENSMUSG00000049580.13	Tsku	chr7	protein_coding	tsukushi, small leucine rich proteoglycan
known_NIR_18150	chr7	98002337;98008674	98008565;98009228	-	98002337	98009228	cassetteExon	ENSMUST00000179780.3	known	0.88	15.0	2	18;12	2	y	0.83	19.0	4	18;20	4	y	0.79	22.5	6	21;24	6	y	0.86	12.0	2	16;8	2	y	0.89	24.0	3	19;29	3	y	0.89	15.5	2	13;18	2	y	1.00	8.5	0	8;9	0	n	1.00	4.0	0	2;6	0	n	1.00	10.5	0	5;16	0	n	0.86	12.5	2	8;17	2	y	0.81	12.5	3	10;15	3	y	1.00	3.0	0	2;4	0	n	ENSMUSG00000049580.13	Tsku	chr7	protein_coding	tsukushi, small leucine rich proteoglycan
known_NIR_18151	chr7	98008674	98009228	-	98008674	98010449	A5SS	ENSMUST00000094161.11	known	0.55	12	10	12	10	y	0.91	20	2	20	2	y	0.89	24	3	24	3	y	0.57	8	6	8	6	y	0.72	29	11	29	11	y	0.82	18	4	18	4	y	0.69	9	4	9	4	y	1.00	6	0	6	0	n	0.89	16	2	16	2	y	0.81	17	4	17	4	y	0.83	15	3	15	3	y	0.80	4	1	4	1	n	ENSMUSG00000049580.13	Tsku	chr7	protein_coding	tsukushi, small leucine rich proteoglycan
known_NIR_18152	chr7	98240091	98243959	-	98240091;98242873	98242538;98243959	ES	ENSMUST00000205911.2	known	0.14	1	6.0	1	12;0	n	0.14	1	6.0	1	11;1	n	0.14	2	12.0	2	21;3	y	0.31	2	4.5	2	9;0	n	0.15	2	11.5	2	20;3	y	0.00	0	3.5	0	7;0	n	0.30	4	9.5	4	19;0	n	0.25	2	6.0	2	12;0	n	0.38	4	6.5	4	13;0	n	0.30	3	7.0	3	14;0	n	0.28	4	10.5	4	19;2	y	0.29	2	5.0	2	9;1	n	ENSMUSG00000035401.10	Emsy	chr7	protein_coding	EMSY, BRCA2-interacting transcriptional repressor
known_NIR_18153	chr7	98240091	98243959	-	98240091;98243017	98242538;98243959	ES	ENSMUST00000205276.2	known	0.11	1	8.0	1	12;4	n	0.11	1	8.0	1	11;5	n	0.12	2	15.0	2	21;9	y	0.22	2	7.0	2	9;5	y	0.14	2	12.5	2	20;5	y	0.00	0	4.5	0	7;2	n	0.18	4	18.0	4	19;17	y	0.20	2	8.0	2	12;4	y	0.38	4	6.5	4	13;0	n	0.24	3	9.5	3	14;5	y	0.24	4	12.5	4	19;6	y	0.24	2	6.5	2	9;4	y	ENSMUSG00000035401.10	Emsy	chr7	protein_coding	EMSY, BRCA2-interacting transcriptional repressor
known_NIR_18154	chr7	98242873	98243959	-	98243017	98243959	A3SS	ENSMUST00000205276.2	known	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.25	3	9	3	9	y	0.00	0	5	0	5	n	0.38	3	5	3	5	n	0.00	0	2	0	2	n	0.00	0	17	0	17	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.25	2	6	2	6	n	0.20	1	4	1	4	n	ENSMUSG00000035401.10	Emsy	chr7	protein_coding	EMSY, BRCA2-interacting transcriptional repressor
known_NIR_18155	chr7	98243192	98243959	-	98243017	98243959	A3SS	ENSMUST00000205276.2	known	0.33	2	4	2	4	n	0.17	1	5	1	5	n	0.25	3	9	3	9	y	0.17	1	5	1	5	n	0.50	5	5	5	5	y	0.00	0	2	0	2	n	0.00	0	17	0	17	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.50	5	5	5	5	y	0.40	4	6	4	6	y	0.33	2	4	2	4	n	ENSMUSG00000035401.10	Emsy	chr7	protein_coding	EMSY, BRCA2-interacting transcriptional repressor
known_NIR_18156	chr7	98246391	98251790	-	98246391;98250034	98249879;98251790	ES	ENSMUST00000205276.2	known	0.00	0	5.5	0	3;8	n	0.00	0	4.5	0	1;8	n	0.09	1	10.5	1	4;17	n	0.20	1	4.0	1	5;3	n	0.00	0	8.5	0	7;10	n	0.09	1	10.0	1	8;12	n	0.00	0	10.0	0	6;14	n	0.00	0	5.0	0	4;6	n	0.00	0	7.5	0	4;11	n	0.18	3	13.5	3	9;18	y	0.00	0	5.0	0	4;6	n	0.00	0	12.5	0	7;18	n	ENSMUSG00000035401.10	Emsy	chr7	protein_coding	EMSY, BRCA2-interacting transcriptional repressor
known_NIR_18157	chr7	98246391	98251790	-	98250034	98251790	3pMXE	ENSMUST00000205485.2	known	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.06	1	17	1	17	n	0.25	1	3	1	3	n	0.00	0	10	0	10	n	0.08	1	12	1	12	n	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.14	3	18	3	18	y	0.00	0	6	0	6	n	0.00	0	18	0	18	n	ENSMUSG00000035401.10	Emsy	chr7	protein_coding	EMSY, BRCA2-interacting transcriptional repressor
known_NIR_18158	chr7	98246391	98259874	-	98251954	98259874	3pMXE	ENSMUST00000206619.2	known	0.38	3	5	3	5	n	0.00	0	7	0	7	n	0.13	2	13	2	13	y	0.12	1	7	1	7	n	0.08	1	12	1	12	n	0.00	0	3	0	3	n	0.23	3	10	3	10	y	0.14	1	6	1	6	n	0.17	1	5	1	5	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	ENSMUSG00000035401.10	Emsy	chr7	protein_coding	EMSY, BRCA2-interacting transcriptional repressor
known_NIR_18159	chr7	98246391;98249000	98248959;98249879	-	98246391	98249879	cassetteExon	ENSMUST00000205276.2	known	0.68	6.5	3	6;7	3	y	0.60	1.5	1	1;2	1	n	0.53	4.5	4	6;3	4	y	0.09	0.5	5	1;0	5	n	0.30	3.0	7	2;4	7	y	0.30	3.5	8	4;3	8	y	0.29	2.5	6	1;4	6	n	0.33	2.0	4	2;2	4	n	0.38	2.5	4	2;3	4	n	0.36	5.0	9	5;5	9	y	0.47	3.5	4	2;5	4	y	0.26	2.5	7	2;3	7	y	ENSMUSG00000035401.10	Emsy	chr7	protein_coding	EMSY, BRCA2-interacting transcriptional repressor
known_NIR_18160	chr7	98246391;98251954	98251790;98259874	-	98246391;98250034	98249879;98259874	MXE	ENSMUST00000205886.2	known	0.62	2.5	1.5	0;5	3;0	n	0.88	3.5	0.5	0;7	1;0	n	0.67	7.0	3.5	1;13	4;3	n	0.62	4.0	2.5	1;7	5;0	n	0.63	6.0	3.5	0;12	7;0	n	0.27	2.0	5.5	1;3	8;3	n	0.62	5.0	3.0	0;10	6;0	n	0.55	3.0	2.5	0;6	4;1	n	0.56	2.5	2.0	0;5	4;0	n	0.45	4.5	5.5	3;6	9;2	y	0.50	2.0	2.0	0;4	4;0	n	0.56	4.5	3.5	0;9	7;0	n	ENSMUSG00000035401.10	Emsy	chr7	protein_coding	EMSY, BRCA2-interacting transcriptional repressor
known_NIR_18161	chr7	98250034	98259874	-	98250034	98251790	5pMXE	ENSMUST00000205485.2	known	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.15	3	17	3	17	y	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.20	3	12	3	12	y	0.00	0	14	0	14	n	0.14	1	6	1	6	n	0.00	0	11	0	11	n	0.10	2	18	2	18	y	0.00	0	6	0	6	n	0.00	0	18	0	18	n	ENSMUSG00000035401.10	Emsy	chr7	protein_coding	EMSY, BRCA2-interacting transcriptional repressor
known_NIR_18162	chr7	98250034	98259874	-	98250034;98251954	98251790;98259874	ES	ENSMUST00000205276.2	known	0.00	0	6.5	0	8;5	n	0.00	0	7.5	0	8;7	n	0.17	3	15.0	3	17;13	y	0.00	0	5.0	0	3;7	n	0.00	0	11.0	0	10;12	n	0.29	3	7.5	3	12;3	y	0.00	0	12.0	0	14;10	n	0.14	1	6.0	1	6;6	n	0.00	0	8.0	0	11;5	n	0.14	2	12.0	2	18;6	y	0.00	0	5.0	0	6;4	n	0.00	0	13.5	0	18;9	n	ENSMUSG00000035401.10	Emsy	chr7	protein_coding	EMSY, BRCA2-interacting transcriptional repressor
known_NIR_18163	chr7	98250034	98259874	-	98251954	98259874	3pMXE	ENSMUST00000206619.2	known	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.19	3	13	3	13	y	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.50	3	3	3	3	n	0.00	0	10	0	10	n	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.25	2	6	2	6	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	ENSMUSG00000035401.10	Emsy	chr7	protein_coding	EMSY, BRCA2-interacting transcriptional repressor
known_NIR_18164	chr7	98286727;98289090	98288938;98290700	-	98286727	98290700	cassetteExon	ENSMUST00000205276.2	known	0.50	4.0	4	2;6	4	y	0.20	1.0	4	2;0	4	n	0.25	2.0	6	0;4	6	n	0.25	1.0	3	1;1	3	n	0.12	1.5	11	3;0	11	n	0.11	0.5	4	0;1	4	n	0.12	1.0	7	2;0	7	n	0.09	1.0	10	1;1	10	n	0.08	0.5	6	0;1	6	n	0.22	2.0	7	2;2	7	y	0.50	2.0	2	3;1	2	n	0.25	2.0	6	3;1	6	n	ENSMUSG00000035401.10	Emsy	chr7	protein_coding	EMSY, BRCA2-interacting transcriptional repressor
known_NIR_18165	chr7	98290875	98295656	-	98290875	98294374	5pMXE	ENSMUST00000206256.2	known	0.25	1	3	1	3	n	0.40	2	3	2	3	n	0.19	3	13	3	13	y	0.00	0	3	0	3	n	0.50	5	5	5	5	y	0.50	2	2	2	2	n	0.20	1	4	1	4	n	0.17	1	5	1	5	n	0.67	4	2	4	2	n	0.33	2	4	2	4	n	1.00	1	0	1	0	n	0.17	1	5	1	5	n	ENSMUSG00000035401.10	Emsy	chr7	protein_coding	EMSY, BRCA2-interacting transcriptional repressor
known_NIR_18166	chr7	98290875	98295656	-	98290875;98294415	98294374;98295656	ES	ENSMUST00000205276.2	known	0.33	1	2.0	1	3;1	n	0.36	2	3.5	2	3;4	n	0.19	3	12.5	3	13;12	y	0.00	0	3.5	0	3;4	n	0.40	5	7.5	5	5;10	y	0.50	2	2.0	2	2;2	n	0.25	1	3.0	1	4;2	n	0.17	1	5.0	1	5;5	n	0.62	4	2.5	4	2;3	n	0.44	2	2.5	2	4;1	n	0.67	1	0.5	1	0;1	n	0.22	1	3.5	1	5;2	n	ENSMUSG00000035401.10	Emsy	chr7	protein_coding	EMSY, BRCA2-interacting transcriptional repressor
known_NIR_18167	chr7	98356324	98359333	+	98356324;98357238	98357144;98359333	ES	ENSMUST00000126356.8	known	0.81	28	6.5	28	8;5	y	0.92	30	2.5	30	2;3	y	0.88	55	7.5	55	6;9	y	0.80	37	9.5	37	7;12	y	0.81	54	13.0	54	14;12	y	0.95	37	2.0	37	2;2	y	0.90	64	7.5	64	9;6	y	0.85	38	6.5	38	8;5	y	0.88	25	3.5	25	2;5	y	0.89	55	7.0	55	7;7	y	0.77	18	5.5	18	5;6	y	0.88	53	7.0	53	9;5	y	ENSMUSG00000030753.16	Thap12	chr7	protein_coding	THAP domain containing 12
known_NIR_18168	chr7	98362160	98364189	+	98362102	98364189	A5SS	ENSMUST00000126356.8	known	0.00	0	35	0	35	n	0.00	0	26	0	26	n	0.02	1	59	1	59	n	0.02	1	42	1	42	n	0.05	3	53	3	53	y	0.03	1	33	1	33	n	0.04	3	74	3	74	y	0.00	0	38	0	38	n	0.00	0	31	0	31	n	0.06	4	63	4	63	y	0.03	1	28	1	28	n	0.05	3	52	3	52	y	ENSMUSG00000030753.16	Thap12	chr7	protein_coding	THAP domain containing 12
known_NIR_18169	chr7	98705361	98715007	-	98665881	98715007	A3SS	ENSMUST00000037968.10	known	0.00	0	40	0	40	n	0.04	1	26	1	26	n	0.00	0	49	0	49	n	0.05	2	37	2	37	y	0.10	5	46	5	46	y	0.00	0	32	0	32	n	0.02	1	44	1	44	n	0.06	2	29	2	29	y	0.00	0	45	0	45	n	0.04	2	51	2	51	y	0.03	1	36	1	36	n	0.00	0	42	0	42	n	ENSMUSG00000035354.10	Uvrag	chr7	protein_coding	UV radiation resistance associated gene
known_NIR_18170	chr7	98808244	98813842	-	98808244	98818905	A5SS	ENSMUST00000207491.2	known	1.00	910	0	910	0	n	1.00	656	2	656	2	y	1.00	843	0	843	0	n	1.00	1049	0	1049	0	n	1.00	1417	1	1417	1	n	1.00	848	4	848	4	y	1.00	1100	4	1100	4	y	1.00	906	2	906	2	y	1.00	807	1	807	1	n	1.00	1220	3	1220	3	y	1.00	834	2	834	2	y	1.00	1030	3	1030	3	y	ENSMUSG00000030747.6	Dgat2	chr7	protein_coding	diacylglycerol O-acyltransferase 2
known_NIR_18171	chr7	98814396	98818905	-	98808244	98818905	A3SS	ENSMUST00000207491.2	known	1.00	785	0	785	0	n	1.00	615	2	615	2	y	1.00	813	0	813	0	n	1.00	936	0	936	0	n	1.00	1169	1	1169	1	n	0.99	691	4	691	4	y	1.00	978	4	978	4	y	1.00	847	2	847	2	y	1.00	761	1	761	1	n	1.00	1121	3	1121	3	y	1.00	733	2	733	2	y	1.00	1076	3	1076	3	y	ENSMUSG00000030747.6	Dgat2	chr7	protein_coding	diacylglycerol O-acyltransferase 2
known_NIR_18172	chr7	98818215	98818905	-	98814396	98818905	A3SS	ENSMUST00000033001.6	known	0.00	2	785	2	785	y	0.00	1	615	1	615	n	0.00	0	813	0	813	n	0.00	3	936	3	936	y	0.00	3	1169	3	1169	y	0.00	1	691	1	691	n	0.00	4	978	4	978	y	0.01	6	847	6	847	y	0.00	3	761	3	761	y	0.00	1	1121	1	1121	n	0.00	3	733	3	733	y	0.00	2	1076	2	1076	y	ENSMUSG00000030747.6	Dgat2	chr7	protein_coding	diacylglycerol O-acyltransferase 2
known_NIR_18173	chr7	98819033	98831479	-	98819033	98831599	A5SS	ENSMUST00000033001.6	known	0.00	0	568	0	568	n	0.00	0	375	0	375	n	0.00	0	484	0	484	n	0.00	0	601	0	601	n	0.00	0	803	0	803	n	0.00	0	477	0	477	n	0.00	1	625	1	625	n	0.00	0	588	0	588	n	0.00	1	473	1	473	n	0.00	0	764	0	764	n	0.00	1	538	1	538	n	0.00	2	702	2	702	y	ENSMUSG00000030747.6	Dgat2	chr7	protein_coding	diacylglycerol O-acyltransferase 2
known_NIR_18174	chr7	98998671	99002260	-	98998671	99002089	A5SS	ENSMUST00000169437.9	known	1.00	5	0	5	0	n	1.00	5	0	5	0	n	0.70	7	3	7	3	y	1.00	5	0	5	0	n	1.00	6	0	6	0	n	1.00	9	0	9	0	n	1.00	14	0	14	0	n	1.00	1	0	1	0	n	1.00	6	0	6	0	n	1.00	6	0	6	0	n	1.00	1	0	1	0	n	1.00	4	0	4	0	n	ENSMUSG00000070436.13	Serpinh1	chr7	protein_coding	serine (or cysteine) peptidase inhibitor, clade H, member 1
known_NIR_18175	chr7	98998671;99001074	99001031;99002260	-	98998671	99002260	cassetteExon	ENSMUST00000094154.6	known	0.00	0.0	5	0;0	5	n	0.00	0.0	5	0;0	5	n	0.12	1.0	7	2;0	7	n	0.00	0.0	5	0;0	5	n	0.00	0.0	6	0;0	6	n	0.22	2.5	9	4;1	9	n	0.26	5.0	14	6;4	14	y	0.33	0.5	1	1;0	1	n	0.00	0.0	6	0;0	6	n	0.00	0.0	6	0;0	6	n	0.50	1.0	1	1;1	1	n	0.11	0.5	4	1;0	4	n	ENSMUSG00000070436.13	Serpinh1	chr7	protein_coding	serine (or cysteine) peptidase inhibitor, clade H, member 1
known_NIR_18176	chr7	99309327	99310311	-	99309383	99310311	A3SS	ENSMUST00000032985.11	known	0.02	6	252	6	252	y	0.04	9	218	9	218	y	0.00	0	128	0	128	n	0.02	7	363	7	363	y	0.03	8	305	8	305	y	0.00	0	70	0	70	n	0.03	10	300	10	300	y	0.05	6	115	6	115	y	0.03	7	250	7	250	y	0.01	3	317	3	317	y	0.01	2	252	2	252	y	0.03	10	285	10	285	y	ENSMUSG00000030737.18	Slco2b1	chr7	protein_coding	solute carrier organic anion transporter family, member 2b1
known_NIR_18177	chr7	99341100	99344270	-	99341100	99355718	A5SS	ENSMUST00000107088.8	known	1.00	36	0	36	0	n	1.00	16	0	16	0	n	0.84	26	5	26	5	y	0.95	40	2	40	2	y	0.98	40	1	40	1	n	0.79	15	4	15	4	y	0.91	49	5	49	5	y	1.00	23	0	23	0	n	1.00	43	0	43	0	n	0.99	73	1	73	1	n	0.98	40	1	40	1	n	0.98	51	1	51	1	n	ENSMUSG00000030737.18	Slco2b1	chr7	protein_coding	solute carrier organic anion transporter family, member 2b1
known_NIR_18178	chr7	99341100	99344742	-	99341100	99344270	A5SS&ES	ENSMUST00000145381.8	known	0.53	41	36	41	36	y	0.70	37	16	37	16	y	0.30	11	26	11	26	y	0.70	95	40	95	40	y	0.68	84	40	84	40	y	0.46	13	15	13	15	y	0.49	47	49	47	49	y	0.60	34	23	34	23	y	0.49	42	43	42	43	y	0.52	78	73	78	73	y	0.58	55	40	55	40	y	0.51	54	51	54	51	y	ENSMUSG00000030737.18	Slco2b1	chr7	protein_coding	solute carrier organic anion transporter family, member 2b1
known_NIR_18179	chr7	99341100	99355718	-	99341100	99344742	5pMXE	ENSMUST00000107086.9	known	0.00	0	41	0	41	n	0.00	0	37	0	37	n	0.31	5	11	5	11	y	0.02	2	95	2	95	y	0.01	1	84	1	84	n	0.24	4	13	4	13	y	0.10	5	47	5	47	y	0.00	0	34	0	34	n	0.00	0	42	0	42	n	0.01	1	78	1	78	n	0.02	1	55	1	55	n	0.02	1	54	1	54	n	ENSMUSG00000030737.18	Slco2b1	chr7	protein_coding	solute carrier organic anion transporter family, member 2b1
known_NIR_18180	chr7	99341100;99344424	99344270;99344742	-	99341100	99344742	cassetteExon	ENSMUST00000107086.9	known	0.31	18.0	41	36;0	41	n	0.20	9.0	37	16;2	37	y	0.54	13.0	11	26;0	11	n	0.18	21.0	95	40;2	95	y	0.20	21.0	84	40;2	84	y	0.38	8.0	13	15;1	13	n	0.36	26.0	47	49;3	47	y	0.27	12.5	34	23;2	34	y	0.36	23.5	42	43;4	42	y	0.34	41.0	78	73;9	78	y	0.28	21.0	55	40;2	55	y	0.33	26.5	54	51;2	54	y	ENSMUSG00000030737.18	Slco2b1	chr7	protein_coding	solute carrier organic anion transporter family, member 2b1
known_NIR_18181	chr7	99341100;99344574	99344270;99344742	-	99341100	99344742	cassetteExon	ENSMUST00000107086.9	known	0.36	23.5	41	36;11	41	y	0.23	11.0	37	16;6	37	y	0.61	17.5	11	26;9	11	y	0.25	31.0	95	40;22	95	y	0.24	26.0	84	40;12	84	y	0.46	11.0	13	15;7	13	y	0.43	35.0	47	49;21	47	y	0.36	19.5	34	23;16	34	y	0.42	30.5	42	43;18	42	y	0.40	52.0	78	73;31	78	y	0.31	24.5	55	40;9	55	y	0.41	38.0	54	51;25	54	y	ENSMUSG00000030737.18	Slco2b1	chr7	protein_coding	solute carrier organic anion transporter family, member 2b1
known_NIR_18182	chr7	99344424	99344767	-	99344574	99344767	A3SS	ENSMUST00000145381.8	known	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.18	2	9	2	9	y	0.10	1	9	1	9	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.14	1	6	1	6	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.12	1	7	1	7	n	0.00	0	2	0	2	n	ENSMUSG00000030737.18	Slco2b1	chr7	protein_coding	solute carrier organic anion transporter family, member 2b1
known_NIR_18183	chr7	99344574	99344742	-	99344424	99344742	A3SS	ENSMUST00000208225.2	known	1.00	11	0	11	0	n	0.75	6	2	6	2	n	1.00	9	0	9	0	n	0.92	22	2	22	2	y	0.86	12	2	12	2	y	0.88	7	1	7	1	n	0.88	21	3	21	3	y	0.89	16	2	16	2	y	0.82	18	4	18	4	y	0.78	31	9	31	9	y	0.82	9	2	9	2	y	0.93	25	2	25	2	y	ENSMUSG00000030737.18	Slco2b1	chr7	protein_coding	solute carrier organic anion transporter family, member 2b1
known_NIR_18184	chr7	99344574	99344742	-	99344574	99344767	A5SS	ENSMUST00000145381.8	known	0.61	11	7	11	7	y	0.86	6	1	6	1	n	0.90	9	1	9	1	n	0.71	22	9	22	9	y	0.57	12	9	12	9	y	0.78	7	2	7	2	n	0.75	21	7	21	7	y	0.73	16	6	16	6	y	0.86	18	3	18	3	y	0.86	31	5	31	5	y	0.56	9	7	9	7	y	0.93	25	2	25	2	y	ENSMUSG00000030737.18	Slco2b1	chr7	protein_coding	solute carrier organic anion transporter family, member 2b1
known_NIR_18185	chr7	99493966	99498183	-	99497666	99498183	A3SS&ES	ENSMUST00000036274.8	known	0.00	0	456	0	456	n	0.00	0	450	0	450	n	0.00	0	1216	0	1216	n	0.00	0	420	0	420	n	0.00	0	710	0	710	n	0.00	0	695	0	695	n	0.00	2	592	2	592	y	0.00	0	598	0	598	n	0.00	0	332	0	332	n	0.00	0	446	0	446	n	0.00	0	418	0	418	n	0.00	0	520	0	520	n	ENSMUSG00000035227.8	Spcs2	chr7	protein_coding	signal peptidase complex subunit 2 homolog (S. cerevisiae)
known_NIR_18186	chr7	99498266;99498459	99498364;99507971	-	99498266	99507971	cassetteExon	ENSMUST00000036274.8	known	0.01	2.0	346	3;1	346	n	0.00	0.0	353	0;0	353	n	0.00	2.0	1070	2;2	1070	y	0.00	1.0	400	2;0	400	n	0.00	0.0	709	0;0	709	n	0.00	1.0	663	2;0	663	n	0.00	1.0	482	0;2	482	n	0.00	0.5	603	0;1	603	n	0.00	0.0	297	0;0	297	n	0.00	0.5	422	0;1	422	n	0.00	0.0	341	0;0	341	n	0.00	0.5	439	1;0	439	n	ENSMUSG00000035227.8	Spcs2	chr7	protein_coding	signal peptidase complex subunit 2 homolog (S. cerevisiae)
known_NIR_18187	chr7	99498266;99505721	99505620;99507971	-	99498266	99507971	cassetteExon	ENSMUST00000036274.8	known	0.00	0.0	346	0;0	346	n	0.00	0.0	353	0;0	353	n	0.00	3.5	1070	3;4	1070	y	0.00	0.5	400	1;0	400	n	0.00	1.0	709	2;0	709	n	0.00	0.0	663	0;0	663	n	0.00	0.0	482	0;0	482	n	0.00	0.0	603	0;0	603	n	0.00	0.0	297	0;0	297	n	0.00	0.0	422	0;0	422	n	0.00	0.0	341	0;0	341	n	0.00	0.0	439	0;0	439	n	ENSMUSG00000035227.8	Spcs2	chr7	protein_coding	signal peptidase complex subunit 2 homolog (S. cerevisiae)
known_NIR_18188	chr7	99498266;99505721	99505620;99507971	-	99498266;99498459	99498364;99507971	MXE	ENSMUST00000208477.2	known	0.00	0.0	2.0	0;0	3;1	n	-	-	-	-	-	-	0.64	3.5	2.0	3;4	2;2	y	0.33	0.5	1.0	1;0	2;0	n	1.00	1.0	0.0	2;0	0;0	n	0.00	0.0	1.0	0;0	2;0	n	0.00	0.0	1.0	0;0	0;2	n	0.00	0.0	0.5	0;0	0;1	n	-	-	-	-	-	-	0.00	0.0	0.5	0;0	0;1	n	-	-	-	-	-	-	0.00	0.0	0.5	0;0	1;0	n	ENSMUSG00000035227.8	Spcs2	chr7	protein_coding	signal peptidase complex subunit 2 homolog (S. cerevisiae)
known_NIR_18189	chr7	99768936	99770549	-	99768936	99770571	A5SS	ENSMUST00000032969.14	known	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	20	0	20	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.09	2	20	2	20	y	ENSMUSG00000030726.17	Pold3	chr7	protein_coding	polymerase (DNA-directed), delta 3, accessory subunit
known_NIR_18190	chr8	10028019	10037385	+	10028019;10032970	10032864;10037385	ES	ENSMUST00000139793.8	known	0.69	11	5.0	11	4;6	y	0.56	5	4.0	5	3;5	y	0.67	19	9.5	19	9;10	y	0.71	16	6.5	16	9;4	y	0.62	16	10.0	16	11;9	y	0.65	14	7.5	14	5;10	y	0.74	13	4.5	13	2;7	y	0.40	6	9.0	6	11;7	y	0.74	10	3.5	10	2;5	y	0.85	29	5.0	29	3;7	y	0.64	8	4.5	8	1;8	n	0.67	20	10.0	20	5;15	y	ENSMUSG00000040396.13	Abhd13	chr8	protein_coding	abhydrolase domain containing 13
known_NIR_18191	chr8	104838146	104839512	+	104828364	104839512	A5SS	ENSMUST00000034339.10	known	0.00	0	1	0	1	n	1.00	4	0	4	0	n	0.12	1	7	1	7	n	0.57	4	3	4	3	n	0.44	4	5	4	5	n	0.00	0	4	0	4	n	0.21	3	11	3	11	y	0.80	4	1	4	1	n	1.00	2	0	2	0	n	0.00	0	2	0	2	n	0.60	3	2	3	2	n	0.00	0	2	0	2	n	ENSMUSG00000031871.10	Cdh5	chr8	protein_coding	cadherin 5
known_NIR_18192	chr8	104957880	104965376	-	104957880;104963477	104963404;104965376	ES	ENSMUST00000050211.7	known	0.32	8	17.0	8	19;15	y	0.59	23	16.0	23	15;17	y	0.52	18	16.5	18	10;23	y	0.42	17	23.0	17	21;25	y	0.37	15	26.0	15	24;28	y	0.60	12	8.0	12	8;8	y	0.43	23	31.0	23	28;34	y	0.45	10	12.0	10	12;12	y	0.55	18	15.0	18	12;18	y	0.48	23	24.5	23	23;26	y	0.57	24	18.0	24	24;12	y	0.28	11	28.0	11	26;30	y	ENSMUSG00000035824.8	Tk2	chr8	protein_coding	thymidine kinase 2, mitochondrial
known_NIR_18193	chr8	104965607	104967748	-	104965465	104967748	A3SS	ENSMUST00000050211.7	known	0.00	0	38	0	38	n	0.00	0	27	0	27	n	0.00	0	57	0	57	n	0.00	0	36	0	36	n	0.00	0	73	0	73	n	0.00	0	35	0	35	n	0.03	2	73	2	73	y	0.00	0	21	0	21	n	0.00	0	42	0	42	n	0.04	2	54	2	54	y	0.00	0	59	0	59	n	0.00	0	39	0	39	n	ENSMUSG00000035824.8	Tk2	chr8	protein_coding	thymidine kinase 2, mitochondrial
known_NIR_18194	chr8	104970091	104975033	-	104970091	104974279	A5SS&ES	ENSMUST00000212854.2	known	0.00	0	31	0	31	n	0.04	1	26	1	26	n	0.08	2	22	2	22	y	0.08	2	23	2	23	y	0.02	1	40	1	40	n	0.00	0	16	0	16	n	0.00	0	44	0	44	n	0.11	2	16	2	16	y	0.00	0	32	0	32	n	0.00	0	33	0	33	n	0.00	0	23	0	23	n	0.04	1	26	1	26	n	ENSMUSG00000035824.8	Tk2	chr8	protein_coding	thymidine kinase 2, mitochondrial
known_NIR_18195	chr8	104970091	104975033	-	104970091;104974316	104974279;104975033	ES	ENSMUST00000050211.7	known	0.00	0	27.0	0	31;23	n	0.04	1	24.5	1	26;23	n	0.08	2	23.0	2	22;24	y	0.09	2	21.5	2	23;20	y	0.03	1	37.5	1	40;35	n	0.00	0	16.5	0	16;17	n	0.00	0	38.0	0	44;32	n	0.09	2	19.5	2	16;23	y	0.00	0	26.5	0	32;21	n	0.00	0	36.0	0	33;39	n	0.00	0	21.5	0	23;20	n	0.03	1	28.0	1	26;30	n	ENSMUSG00000035824.8	Tk2	chr8	protein_coding	thymidine kinase 2, mitochondrial
known_NIR_18196	chr8	104974316	104974658	-	104974316	104975033	A5SS	ENSMUST00000050211.7	known	0.00	0	23	0	23	n	0.12	3	23	3	23	y	0.11	3	24	3	24	y	0.05	1	20	1	20	n	0.03	1	35	1	35	n	0.11	2	17	2	17	y	0.03	1	32	1	32	n	0.04	1	23	1	23	n	0.00	0	21	0	21	n	0.03	1	39	1	39	n	0.05	1	20	1	20	n	0.00	0	30	0	30	n	ENSMUSG00000035824.8	Tk2	chr8	protein_coding	thymidine kinase 2, mitochondrial
known_NIR_18197	chr8	105147306	105148919	-	105147314	105148919	A3SS	ENSMUST00000041769.8	known	0.00	0	27	0	27	n	0.05	1	21	1	21	n	0.10	5	47	5	47	y	0.00	0	35	0	35	n	0.04	2	52	2	52	y	0.00	0	26	0	26	n	0.00	0	44	0	44	n	0.00	0	31	0	31	n	0.08	3	34	3	34	y	0.01	1	66	1	66	n	0.00	0	24	0	24	n	0.00	0	40	0	40	n	ENSMUSG00000035770.9	Dync1li2	chr8	protein_coding	dynein, cytoplasmic 1 light intermediate chain 2
known_NIR_18198	chr8	105149862	105152071	-	105149862;105150259	105150218;105152071	ES	ENSMUST00000041769.8	known	0.00	0	26.5	0	18;35	n	0.00	0	17.5	0	11;24	n	0.08	4	49.0	4	41;57	y	0.00	0	18.5	0	19;18	n	0.00	0	43.5	0	35;52	n	0.00	0	22.5	0	20;25	n	0.00	0	37.0	0	27;47	n	0.00	0	25.5	0	21;30	n	0.00	0	27.0	0	28;26	n	0.02	1	47.0	1	43;51	n	0.00	0	22.0	0	23;21	n	0.03	1	37.5	1	37;38	n	ENSMUSG00000035770.9	Dync1li2	chr8	protein_coding	dynein, cytoplasmic 1 light intermediate chain 2
known_NIR_18199	chr8	105246613	105249279	-	105246455	105249279	A3SS	ENSMUST00000160913.8	known	0.00	0	64	0	64	n	0.00	0	38	0	38	n	0.05	3	63	3	63	y	0.04	3	67	3	67	y	0.07	6	78	6	78	y	0.00	0	41	0	41	n	0.05	6	105	6	105	y	0.00	0	29	0	29	n	0.00	0	64	0	64	n	0.00	0	74	0	74	n	0.00	0	52	0	52	n	0.00	0	73	0	73	n	ENSMUSG00000031878.19	Nae1	chr8	protein_coding	NEDD8 activating enzyme E1 subunit 1
known_NIR_18200	chr8	105253794	105254819	-	105253794	105254010	A5SS	ENSMUST00000159393.9	known	0.17	5	25	5	25	y	0.20	3	12	3	12	y	0.00	0	28	0	28	n	0.08	3	34	3	34	y	0.07	4	53	4	53	y	0.11	2	17	2	17	y	0.06	2	33	2	33	y	0.00	0	19	0	19	n	0.00	0	25	0	25	n	0.02	1	51	1	51	n	0.00	0	17	0	17	n	0.06	3	48	3	48	y	ENSMUSG00000031878.19	Nae1	chr8	protein_coding	NEDD8 activating enzyme E1 subunit 1
known_NIR_18201	chr8	105253794;105254081	105254010;105254819	-	105253794	105254819	cassetteExon	ENSMUST00000162466.8	known	0.85	28.5	5	25;32	5	y	0.77	10.0	3	12;8	3	y	1.00	33.0	0	28;38	0	n	0.93	40.0	3	34;46	3	y	0.94	58.0	4	53;63	4	y	0.91	20.0	2	17;23	2	y	0.95	38.0	2	33;43	2	y	1.00	19.5	0	19;20	0	n	1.00	29.5	0	25;34	0	n	0.98	45.5	1	51;40	1	n	1.00	20.0	0	17;23	0	n	0.94	51.0	3	48;54	3	y	ENSMUSG00000031878.19	Nae1	chr8	protein_coding	NEDD8 activating enzyme E1 subunit 1
known_NIR_18202	chr8	105357560	105357755	-	105357612	105357755	A3SS	ENSMUST00000034351.8	known	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.15	11	60	11	60	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031880.8	Rrad	chr8	protein_coding	Ras-related associated with diabetes
known_NIR_18203	chr8	105463843	105464100	+	105463843	105463924	A3SS	ENSMUST00000034346.15	known	0.03	15	456	15	456	y	0.04	13	300	13	300	y	0.00	0	471	0	471	n	0.02	11	521	11	521	y	0.02	11	457	11	457	y	0.00	0	134	0	134	n	0.02	12	500	12	500	y	0.03	6	208	6	208	y	0.03	24	733	24	733	y	0.01	15	1078	15	1078	y	0.03	32	1054	32	1054	y	0.03	37	1167	37	1167	y	ENSMUSG00000055730.17	Ces2a	chr8	protein_coding	carboxylesterase 2A
known_NIR_18204	chr8	105464182	105465662	+	105464182;105465384	105465286;105465662	ES	ENSMUST00000034346.15	known	0.00	1	491.5	1	460;523	n	0.01	2	383.0	2	383;383	y	0.00	0	467.0	0	425;509	n	0.00	0	515.0	0	505;525	n	0.00	0	494.0	0	493;495	n	0.00	0	151.0	0	131;171	n	0.00	2	556.5	2	548;565	y	0.00	0	229.5	0	235;224	n	0.00	0	844.0	0	798;890	n	0.00	1	1070.5	1	1029;1112	n	0.00	2	1264.5	2	1185;1344	y	0.00	2	1218.5	2	1156;1281	y	ENSMUSG00000055730.17	Ces2a	chr8	protein_coding	carboxylesterase 2A
known_NIR_18205	chr8	105777247	105778364	+	105777247	105778100	3pMXE	ENSMUST00000212329.2	known	0.09	129	1370	129	1370	y	0.08	89	1045	89	1045	y	0.04	12	303	12	303	y	0.06	144	2089	144	2089	y	0.12	250	1787	250	1787	y	0.14	38	241	38	241	y	0.10	154	1438	154	1438	y	0.14	71	427	71	427	y	0.11	209	1725	209	1725	y	0.10	231	2194	231	2194	y	0.12	211	1564	211	1564	y	0.11	204	1611	204	1611	y	ENSMUSG00000069922.13	Ces3a	chr8	protein_coding	carboxylesterase 3A
known_NIR_18206	chr8	105777247	105778364	+	105777247;105778253	105778100;105778364	ES	ENSMUST00000093222.13	known	0.05	129	2510.5	129	1370;3651	y	0.05	89	1794.0	89	1045;2543	y	0.02	12	492.0	12	303;681	y	0.04	144	3444.5	144	2089;4800	y	0.08	250	2898.0	250	1787;4009	y	0.09	38	386.0	38	241;531	y	0.06	154	2519.0	154	1438;3600	y	0.09	71	732.0	71	427;1037	y	0.07	209	2943.0	209	1725;4161	y	0.06	231	3627.0	231	2194;5060	y	0.07	211	2646.0	211	1564;3728	y	0.07	204	2645.0	204	1611;3679	y	ENSMUSG00000069922.13	Ces3a	chr8	protein_coding	carboxylesterase 3A
known_NIR_18207	chr8	105780080	105782211	+	105780080;105780316	105780176;105782211	ES	ENSMUST00000093222.13	known	0.16	655	3536.0	655	3112;3960	y	0.20	614	2466.5	614	2066;2867	y	0.19	142	606.0	142	514;698	y	0.16	775	4072.5	775	3479;4666	y	0.16	681	3597.0	681	3348;3846	y	0.18	110	498.5	110	449;548	y	0.15	612	3562.0	612	3087;4037	y	0.16	166	878.0	166	765;991	y	0.18	879	3887.0	879	3384;4390	y	0.17	992	4734.0	992	4120;5348	y	0.17	767	3708.5	767	3290;4127	y	0.16	692	3584.5	692	3152;4017	y	ENSMUSG00000069922.13	Ces3a	chr8	protein_coding	carboxylesterase 3A
known_NIR_18208	chr8	105780080	105782211	+	105780316	105782211	5pMXE	ENSMUST00000212481.2	known	0.14	655	3960	655	3960	y	0.18	614	2867	614	2867	y	0.17	142	698	142	698	y	0.14	775	4666	775	4666	y	0.15	681	3846	681	3846	y	0.17	110	548	110	548	y	0.13	612	4037	612	4037	y	0.14	166	991	166	991	y	0.17	879	4390	879	4390	y	0.16	992	5348	992	5348	y	0.16	767	4127	767	4127	y	0.15	692	4017	692	4017	y	ENSMUSG00000069922.13	Ces3a	chr8	protein_coding	carboxylesterase 3A
known_NIR_18209	chr8	105783163	105783271	+	105783163	105784093	A3SS	ENSMUST00000093222.13	known	0.01	40	5147	40	5147	y	0.01	29	4479	29	4479	y	0.00	1	1026	1	1026	n	0.01	41	5911	41	5911	y	0.01	44	4862	44	4862	y	0.00	0	731	0	731	n	0.01	52	5312	52	5312	y	0.00	6	1199	6	1199	y	0.01	42	5907	42	5907	y	0.01	52	6980	52	6980	y	0.01	40	5725	40	5725	y	0.01	32	5091	32	5091	y	ENSMUSG00000069922.13	Ces3a	chr8	protein_coding	carboxylesterase 3A
known_NIR_18210	chr8	105818216	105819237	+	105818290	105819237	A5SS	ENSMUST00000093221.13	known	0.05	47	985	47	985	y	0.05	36	692	36	692	y	0.04	7	177	7	177	y	0.04	51	1239	51	1239	y	0.09	94	907	94	907	y	0.07	8	105	8	105	y	0.06	45	754	45	754	y	0.19	28	119	28	119	y	0.03	38	1280	38	1280	y	0.04	52	1204	52	1204	y	0.04	59	1403	59	1403	y	0.05	67	1180	67	1180	y	ENSMUSG00000062181.15	Ces3b	chr8	protein_coding	carboxylesterase 3B
known_NIR_18211	chr8	105818290	105819527	+	105818290;105819386	105819237;105819527	ES	ENSMUST00000093221.13	known	0.04	38	843.5	38	985;702	y	0.06	41	618.0	41	692;544	y	0.02	3	151.0	3	177;125	y	0.04	41	1019.5	41	1239;800	y	0.02	17	783.5	17	907;660	y	0.03	3	98.0	3	105;91	y	0.04	25	671.0	25	754;588	y	0.07	8	114.0	8	119;109	y	0.04	46	1099.0	46	1280;918	y	0.04	41	1016.5	41	1204;829	y	0.05	61	1289.0	61	1403;1175	y	0.04	43	1085.0	43	1180;990	y	ENSMUSG00000062181.15	Ces3b	chr8	protein_coding	carboxylesterase 3B
known_NIR_18212	chr8	105818290	105819527	+	105819386	105819527	A5SS&ES	ENSMUST00000173088.2	known	0.05	38	702	38	702	y	0.07	41	544	41	544	y	0.02	3	125	3	125	y	0.05	41	800	41	800	y	0.03	17	660	17	660	y	0.03	3	91	3	91	y	0.04	25	588	25	588	y	0.07	8	109	8	109	y	0.05	46	918	46	918	y	0.05	41	829	41	829	y	0.05	61	1175	61	1175	y	0.04	43	990	43	990	y	ENSMUSG00000062181.15	Ces3b	chr8	protein_coding	carboxylesterase 3B
known_NIR_18213	chr8	105921223	105942536	+	105921223;105929179	105929084;105942536	ES	ENSMUST00000052209.9	known	0.06	2	29.0	2	36;22	y	0.00	0	12.5	0	20;5	n	0.06	3	49.0	3	73;25	y	0.00	0	27.0	0	39;15	n	0.04	2	46.0	2	66;26	y	0.00	0	26.0	0	39;13	n	0.03	1	36.5	1	54;19	n	0.09	2	21.5	2	30;13	y	0.09	2	21.5	2	31;12	y	0.00	0	25.0	0	32;18	n	0.00	0	20.5	0	31;10	n	0.00	0	39.0	0	59;19	n	ENSMUSG00000031885.15	Cbfb	chr8	protein_coding	core binding factor beta
known_NIR_18214	chr8	105921223	105942536	+	105921223;105929210	105929084;105942536	ES	ENSMUST00000109392.9	known	0.07	2	27.0	2	36;18	y	0.00	0	19.5	0	20;19	n	0.05	3	52.0	3	73;31	y	0.00	0	31.0	0	39;23	n	0.04	2	50.5	2	66;35	y	0.00	0	28.5	0	39;18	n	0.03	1	38.5	1	54;23	n	0.08	2	22.5	2	30;15	y	0.09	2	21.0	2	31;11	y	0.00	0	29.0	0	32;26	n	0.00	0	21.5	0	31;12	n	0.00	0	40.5	0	59;22	n	ENSMUSG00000031885.15	Cbfb	chr8	protein_coding	core binding factor beta
known_NIR_18215	chr8	105929210	105942536	+	105929179	105942536	A5SS	ENSMUST00000052209.9	known	0.45	18	22	18	22	y	0.79	19	5	19	5	y	0.55	31	25	31	25	y	0.61	23	15	23	15	y	0.57	35	26	35	26	y	0.58	18	13	18	13	y	0.55	23	19	23	19	y	0.54	15	13	15	13	y	0.48	11	12	11	12	y	0.59	26	18	26	18	y	0.55	12	10	12	10	y	0.54	22	19	22	19	y	ENSMUSG00000031885.15	Cbfb	chr8	protein_coding	core binding factor beta
known_NIR_18216	chr8	105966382	105967659	+	105966382	105966610	3pMXE	ENSMUST00000132964.2	known	0.02	1	58	1	58	n	0.00	0	34	0	34	n	0.04	3	68	3	68	y	0.01	1	71	1	71	n	0.00	0	93	0	93	n	0.00	0	50	0	50	n	0.00	0	93	0	93	n	0.00	0	40	0	40	n	0.00	0	49	0	49	n	0.03	2	62	2	62	y	0.00	0	55	0	55	n	0.00	0	108	0	108	n	ENSMUSG00000031889.10	D230025D16Rik	chr8	protein_coding	RIKEN cDNA D230025D16 gene
known_NIR_18217	chr8	105966382	105967659	+	105966382;105966704	105966610;105967659	ES	ENSMUST00000141957.8	known	0.03	1	31.0	1	58;4	n	0.00	0	24.5	0	34;15	n	0.08	3	35.5	3	68;3	y	0.02	1	39.5	1	71;8	n	0.00	0	50.0	0	93;7	n	0.00	0	28.5	0	50;7	n	0.00	0	49.5	0	93;6	n	0.00	0	22.0	0	40;4	n	0.00	0	26.5	0	49;4	n	0.06	2	34.0	2	62;6	y	0.00	0	30.0	0	55;5	n	0.00	0	58.0	0	108;8	n	ENSMUSG00000031889.10	D230025D16Rik	chr8	protein_coding	RIKEN cDNA D230025D16 gene
known_NIR_18218	chr8	105966704	105967659	+	105966704;105967570	105967473;105967659	ES	ENSMUST00000034361.10	known	0.06	4	58.0	4	53;63	y	0.21	15	55.5	15	60;51	y	0.03	3	91.5	3	96;87	y	0.09	8	86.0	8	94;78	y	0.05	7	123.0	7	118;128	y	0.15	7	40.0	7	41;39	y	0.06	6	92.5	6	82;103	y	0.07	4	52.0	4	47;57	y	0.10	4	35.0	4	34;36	y	0.08	6	66.5	6	65;68	y	0.07	5	62.5	5	68;57	y	0.07	8	110.5	8	111;110	y	ENSMUSG00000031889.10	D230025D16Rik	chr8	protein_coding	RIKEN cDNA D230025D16 gene
known_NIR_18219	chr8	105967570	105967659	+	105966382	105967659	A5SS	ENSMUST00000124113.8	known	0.98	63	1	63	1	n	1.00	51	0	51	0	n	0.97	87	3	87	3	y	0.99	78	1	78	1	n	1.00	128	0	128	0	n	1.00	39	0	39	0	n	1.00	103	0	103	0	n	1.00	57	0	57	0	n	1.00	36	0	36	0	n	0.97	68	2	68	2	y	1.00	57	0	57	0	n	1.00	110	0	110	0	n	ENSMUSG00000031889.10	D230025D16Rik	chr8	protein_coding	RIKEN cDNA D230025D16 gene
known_NIR_18220	chr8	105975418	105975961	+	105975418	105976051	A3SS	ENSMUST00000034361.10	known	0.02	2	99	2	99	y	0.03	2	57	2	57	y	0.04	3	75	3	75	y	0.07	9	112	9	112	y	0.07	12	163	12	163	y	0.14	10	64	10	64	y	0.04	6	149	6	149	y	0.02	1	63	1	63	n	0.03	2	64	2	64	y	0.07	7	99	7	99	y	0.03	2	74	2	74	y	0.07	10	124	10	124	y	ENSMUSG00000031889.10	D230025D16Rik	chr8	protein_coding	RIKEN cDNA D230025D16 gene
known_NIR_18221	chr8	105986796	105987154	-	105986619	105987154	A3SS	ENSMUST00000034359.10	known	0.00	0	72	0	72	n	0.00	0	56	0	56	n	0.09	5	53	5	53	y	0.00	0	65	0	65	n	0.01	1	95	1	95	n	0.07	3	40	3	40	y	0.04	3	72	3	72	y	0.04	2	48	2	48	y	0.03	2	61	2	61	y	0.00	0	82	0	82	n	0.06	5	76	5	76	y	0.04	3	73	3	73	y	ENSMUSG00000031887.14	Tradd	chr8	protein_coding	TNFRSF1A-associated via death domain
known_NIR_18222	chr8	105999216	105999338	+	105999216	105999442	A3SS	ENSMUST00000173640.8	known	0.86	12	2	12	2	y	0.95	18	1	18	1	n	1.00	2	0	2	0	n	0.82	9	2	9	2	y	0.76	13	4	13	4	y	1.00	5	0	5	0	n	0.85	11	2	11	2	y	1.00	8	0	8	0	n	0.90	18	2	18	2	y	0.90	19	2	19	2	y	0.70	7	3	7	3	y	0.86	18	3	18	3	y	ENSMUSG00000033249.11	Hsf4	chr8	protein_coding	heat shock transcription factor 4
known_NIR_18223	chr8	105999216	106001278	+	105999216;105999565	105999338;106001278	ES	ENSMUST00000036127.9	known	0.07	1	12.5	1	12;13	n	0.11	3	24.0	3	18;30	y	0.31	2	4.5	2	2;7	y	0.07	1	13.0	1	9;17	n	0.13	3	20.0	3	13;27	y	0.00	0	7.0	0	5;9	n	0.00	0	14.0	0	11;17	n	0.00	0	8.5	0	8;9	n	0.00	0	19.0	0	18;20	n	0.04	1	23.5	1	19;28	n	0.00	0	19.0	0	7;31	n	0.00	0	19.0	0	18;20	n	ENSMUSG00000033249.11	Hsf4	chr8	protein_coding	heat shock transcription factor 4
known_NIR_18224	chr8	105999216	106001278	+	105999216;105999565	105999442;106001278	ES	ENSMUST00000173640.8	known	0.12	1	7.5	1	2;13	n	0.16	3	15.5	3	1;30	n	0.36	2	3.5	2	0;7	n	0.10	1	9.5	1	2;17	n	0.16	3	15.5	3	4;27	y	0.00	0	4.5	0	0;9	n	0.00	0	9.5	0	2;17	n	0.00	0	4.5	0	0;9	n	0.00	0	11.0	0	2;20	n	0.06	1	15.0	1	2;28	n	0.00	0	17.0	0	3;31	n	0.00	0	11.5	0	3;20	n	ENSMUSG00000033249.11	Hsf4	chr8	protein_coding	heat shock transcription factor 4
known_NIR_18225	chr8	106024507	106024704	+	106024507	106024913	A3SS	ENSMUST00000015003.10	known	0.00	0	46	0	46	n	0.00	0	52	0	52	n	0.03	2	69	2	69	y	0.04	2	45	2	45	y	0.00	0	65	0	65	n	0.00	0	49	0	49	n	0.00	0	43	0	43	n	0.00	0	35	0	35	n	0.00	0	44	0	44	n	0.00	0	47	0	47	n	0.06	2	30	2	30	y	0.02	1	43	1	43	n	ENSMUSG00000014859.10	E2f4	chr8	protein_coding	E2F transcription factor 4
known_NIR_18226	chr8	106032628	106032747	+	106032639	106032747	A5SS	ENSMUST00000109375.4	known	0.08	3	36	3	36	y	0.04	1	23	1	23	n	0.00	0	33	0	33	n	0.00	0	47	0	47	n	0.06	3	49	3	49	y	0.00	0	16	0	16	n	0.00	0	47	0	47	n	0.00	0	21	0	21	n	0.00	0	22	0	22	n	0.06	3	50	3	50	y	0.10	3	28	3	28	y	0.11	5	40	5	40	y	ENSMUSG00000014791.11	Elmo3	chr8	protein_coding	engulfment and cell motility 3
known_NIR_18227	chr8	106032639;106032819	106032747;106033228	+	106032639	106033228	cassetteExon	ENSMUST00000212046.2	known	0.90	19.0	2	36;2	2	y	0.86	12.0	2	23;1	2	n	1.00	16.5	0	33;0	0	n	1.00	23.5	0	47;0	0	n	1.00	24.5	0	49;0	0	n	1.00	8.0	0	16;0	0	n	1.00	24.0	0	47;1	0	n	1.00	10.5	0	21;0	0	n	0.85	11.0	2	22;0	2	n	0.84	26.5	5	50;3	5	y	1.00	14.0	0	28;0	0	n	0.95	20.0	1	40;0	1	n	ENSMUSG00000014791.11	Elmo3	chr8	protein_coding	engulfment and cell motility 3
known_NIR_18228	chr8	106032639;106033060	106032747;106033228	+	106032639	106033228	cassetteExon	ENSMUST00000212046.2	known	0.95	36.0	2	36;36	2	y	0.94	30.5	2	23;38	2	y	1.00	49.0	0	33;65	0	n	1.00	49.0	0	47;51	0	n	1.00	65.0	0	49;81	0	n	1.00	27.5	0	16;39	0	n	1.00	53.5	0	47;60	0	n	1.00	26.0	0	21;31	0	n	0.95	39.0	2	22;56	2	y	0.93	70.5	5	50;91	5	y	1.00	47.5	0	28;67	0	n	0.98	56.5	1	40;73	1	n	ENSMUSG00000014791.11	Elmo3	chr8	protein_coding	engulfment and cell motility 3
known_NIR_18229	chr8	106032819	106033228	+	106032819	106033010	A3SS	ENSMUST00000212345.2	known	0.04	2	45	2	45	y	0.03	1	38	1	38	n	0.00	0	61	0	61	n	0.00	0	43	0	43	n	0.00	0	66	0	66	n	0.00	0	33	0	33	n	0.02	1	62	1	62	n	0.00	0	31	0	31	n	0.00	0	52	0	52	n	0.04	3	66	3	66	y	0.00	0	51	0	51	n	0.00	0	76	0	76	n	ENSMUSG00000014791.11	Elmo3	chr8	protein_coding	engulfment and cell motility 3
known_NIR_18230	chr8	106032819	106033228	+	106032819;106033060	106033010;106033228	ES	ENSMUST00000109375.4	known	0.05	2	40.5	2	45;36	y	0.03	1	38.0	1	38;38	n	0.00	0	63.0	0	61;65	n	0.00	0	47.0	0	43;51	n	0.00	0	73.5	0	66;81	n	0.00	0	36.0	0	33;39	n	0.02	1	61.0	1	62;60	n	0.00	0	31.0	0	31;31	n	0.00	0	54.0	0	52;56	n	0.04	3	78.5	3	66;91	y	0.00	0	59.0	0	51;67	n	0.00	0	74.5	0	76;73	n	ENSMUSG00000014791.11	Elmo3	chr8	protein_coding	engulfment and cell motility 3
known_NIR_18231	chr8	106033397	106033486	+	106033397	106033473	A3SS	ENSMUST00000212046.2	known	0.95	55	3	55	3	y	0.95	35	2	35	2	y	0.97	63	2	63	2	y	1.00	47	0	47	0	n	0.99	69	1	69	1	n	0.97	28	1	28	1	n	0.98	60	1	60	1	n	0.97	30	1	30	1	n	0.95	41	2	41	2	y	0.87	61	9	61	9	y	0.98	50	1	50	1	n	0.98	56	1	56	1	n	ENSMUSG00000014791.11	Elmo3	chr8	protein_coding	engulfment and cell motility 3
known_NIR_18232	chr8	106042700	106049897	-	106042654	106049897	A3SS	ENSMUST00000209964.2	known	1.00	3	0	3	0	n	0.62	5	3	5	3	n	0.67	4	2	4	2	n	1.00	4	0	4	0	n	0.57	4	3	4	3	n	0.57	4	3	4	3	n	0.67	4	2	4	2	n	0.67	2	1	2	1	n	0.38	3	5	3	5	n	0.64	7	4	7	4	y	0.88	7	1	7	1	n	0.50	4	4	4	4	n	ENSMUSG00000041679.10	Lrrc29	chr8	protein_coding	leucine rich repeat containing 29
known_NIR_18233	chr8	106055090	106055404	+	106055090;106055324	106055240;106055404	ES	ENSMUST00000015000.12	known	0.02	4	191.5	4	201;182	y	0.01	2	271.0	2	240;302	y	0.04	11	266.5	11	276;257	y	0.01	1	188.0	1	184;192	n	0.01	2	319.0	2	322;316	y	0.04	8	197.0	8	222;172	y	0.01	2	332.5	2	332;333	y	0.04	7	186.0	7	190;182	y	0.01	1	185.0	1	194;176	n	0.00	0	304.0	0	318;290	n	0.00	0	267.0	0	260;274	n	0.00	1	248.5	1	232;265	n	ENSMUSG00000014856.13	Tmem208	chr8	protein_coding	transmembrane protein 208
known_NIR_18234	chr8	106055090	106055404	+	106055324	106055404	A5SS&ES	ENSMUST00000153146.9	known	0.02	4	182	4	182	y	0.01	2	302	2	302	y	0.04	11	257	11	257	y	0.01	1	192	1	192	n	0.01	2	316	2	316	y	0.04	8	172	8	172	y	0.01	2	333	2	333	y	0.04	7	182	7	182	y	0.01	1	176	1	176	n	0.00	0	290	0	290	n	0.00	0	274	0	274	n	0.00	1	265	1	265	n	ENSMUSG00000014856.13	Tmem208	chr8	protein_coding	transmembrane protein 208
known_NIR_18235	chr8	106055116	106055240	+	106055090	106055240	A5SS	ENSMUST00000015000.12	known	0.02	4	201	4	201	y	0.04	10	240	10	240	y	0.01	3	276	3	276	y	0.05	9	184	9	184	y	0.03	9	322	9	322	y	0.02	5	222	5	222	y	0.03	9	332	9	332	y	0.02	4	190	4	190	y	0.03	5	194	5	194	y	0.03	11	318	11	318	y	0.03	7	260	7	260	y	0.03	6	232	6	232	y	ENSMUSG00000014856.13	Tmem208	chr8	protein_coding	transmembrane protein 208
known_NIR_18236	chr8	106061434	106063014	-	106061434;106062892	106062869;106063014	ES	ENSMUST00000132777.8	known	1.00	6	0.0	6	0;0	n	0.92	6	0.5	6	0;1	n	0.67	2	1.0	2	0;2	n	0.75	3	1.0	3	1;1	n	0.73	4	1.5	4	2;1	n	1.00	3	0.0	3	0;0	n	0.72	9	3.5	9	3;4	y	1.00	2	0.0	2	0;0	n	0.92	6	0.5	6	0;1	n	1.00	11	0.0	11	0;0	n	1.00	8	0.0	8	0;0	n	0.50	3	3.0	3	3;3	n	ENSMUSG00000014778.11	Fhod1	chr8	protein_coding	formin homology 2 domain containing 1
known_NIR_18237	chr8	106364211	106370148	+	106363352	106370148	A5SS	ENSMUST00000132679.8	known	0.00	0	11	0	11	n	0.11	1	8	1	8	n	0.10	2	19	2	19	y	0.00	0	13	0	13	n	0.03	1	28	1	28	n	0.00	0	16	0	16	n	0.09	1	10	1	10	n	0.00	0	6	0	6	n	0.10	1	9	1	9	n	0.15	3	17	3	17	y	0.00	0	10	0	10	n	0.00	0	15	0	15	n	ENSMUSG00000005698.16	Ctcf	chr8	protein_coding	CCCTC-binding factor
known_NIR_18238	chr8	106403982	106406035	+	106403982	106406703	A3SS	ENSMUST00000005841.16	known	0.00	0	29	0	29	n	0.00	0	23	0	23	n	0.00	0	27	0	27	n	0.06	2	34	2	34	y	0.00	0	31	0	31	n	0.00	0	12	0	12	n	0.00	0	21	0	21	n	0.00	0	20	0	20	n	0.00	0	13	0	13	n	0.00	0	37	0	37	n	0.00	0	17	0	17	n	0.00	0	33	0	33	n	ENSMUSG00000005698.16	Ctcf	chr8	protein_coding	CCCTC-binding factor
known_NIR_18239	chr8	106403982	106406035	+	106403982	106406706	A3SS	ENSMUST00000132679.8	known	0.00	0	31	0	31	n	0.00	0	23	0	23	n	0.00	0	30	0	30	n	0.06	2	32	2	32	y	0.00	0	32	0	32	n	0.00	0	19	0	19	n	0.00	0	32	0	32	n	0.00	0	14	0	14	n	0.00	0	19	0	19	n	0.00	0	37	0	37	n	0.00	0	26	0	26	n	0.00	0	25	0	25	n	ENSMUSG00000005698.16	Ctcf	chr8	protein_coding	CCCTC-binding factor
known_NIR_18240	chr8	106403982	106406703	+	106403982	106406706	A3SS	ENSMUST00000132679.8	known	0.48	29	31	29	31	y	0.50	23	23	23	23	y	0.47	27	30	27	30	y	0.52	34	32	34	32	y	0.49	31	32	31	32	y	0.39	12	19	12	19	y	0.40	21	32	21	32	y	0.59	20	14	20	14	y	0.41	13	19	13	19	y	0.50	37	37	37	37	y	0.40	17	26	17	26	y	0.57	33	25	33	25	y	ENSMUSG00000005698.16	Ctcf	chr8	protein_coding	CCCTC-binding factor
known_NIR_18241	chr8	106426123	106426493	-	106426123;106426362	106426211;106426493	ES	ENSMUST00000211870.2	known	0.00	0	32.0	0	30;34	n	0.02	1	50.0	1	68;32	n	0.02	1	51.0	1	61;41	n	0.03	1	39.0	1	39;39	n	0.00	0	45.5	0	45;46	n	0.04	1	24.5	1	20;29	n	0.02	1	53.5	1	62;45	n	0.07	2	25.0	2	36;14	y	0.00	0	33.5	0	39;28	n	0.00	0	62.5	0	80;45	n	0.05	2	38.5	2	49;28	y	0.00	0	46.0	0	44;48	n	ENSMUSG00000038000.11	Acd	chr8	protein_coding	adrenocortical dysplasia
known_NIR_18242	chr8	106426680	106426914	-	106426792	106426914	A3SS	ENSMUST00000211870.2	known	0.77	24	7	24	7	y	0.67	26	13	26	13	y	0.80	47	12	47	12	y	0.83	34	7	34	7	y	0.72	36	14	36	14	y	0.91	21	2	21	2	y	0.73	52	19	52	19	y	0.74	17	6	17	6	y	0.77	24	7	24	7	y	0.60	24	16	24	16	y	0.83	24	5	24	5	y	0.66	33	17	33	17	y	ENSMUSG00000038000.11	Acd	chr8	protein_coding	adrenocortical dysplasia
known_NIR_18243	chr8	106427034	106427335	-	106427172	106427335	A3SS&ES	ENSMUST00000211870.2	known	0.13	3	20	3	20	y	0.06	2	29	2	29	y	0.30	13	30	13	30	y	0.06	2	32	2	32	y	0.12	4	30	4	30	y	0.12	3	23	3	23	y	0.00	0	42	0	42	n	0.15	2	11	2	11	y	0.18	3	14	3	14	y	0.12	5	38	5	38	y	0.04	1	24	1	24	n	0.04	1	27	1	27	n	ENSMUSG00000038000.11	Acd	chr8	protein_coding	adrenocortical dysplasia
known_NIR_18244	chr8	106427949	106428806	+	106427918	106428806	A5SS	ENSMUST00000212634.2	known	0.29	2	5	2	5	n	0.27	3	8	3	8	y	0.71	10	4	10	4	y	0.43	3	4	3	4	n	0.43	6	8	6	8	y	0.57	4	3	4	3	n	0.42	8	11	8	11	y	0.44	4	5	4	5	n	0.33	3	6	3	6	n	0.24	4	13	4	13	y	0.33	4	8	4	8	y	0.00	0	11	0	11	n	ENSMUSG00000005699.17	Pard6a	chr8	protein_coding	par-6 family cell polarity regulator alpha
known_NIR_18245	chr8	106428435	106428806	+	106427918	106428806	A5SS	ENSMUST00000212634.2	known	0.00	0	5	0	5	n	0.20	2	8	2	8	y	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.14	1	6	1	6	n	0.07	1	13	1	13	n	0.11	1	8	1	8	n	0.00	0	11	0	11	n	ENSMUSG00000005699.17	Pard6a	chr8	protein_coding	par-6 family cell polarity regulator alpha
known_NIR_18246	chr8	106428938	106429240	+	106429028	106429240	A5SS	ENSMUST00000212634.2	known	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.33	1	2	1	2	n	0.15	2	11	2	11	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	ENSMUSG00000005699.17	Pard6a	chr8	protein_coding	par-6 family cell polarity regulator alpha
known_NIR_18247	chr8	106429028	106429243	+	106429028	106429240	A3SS	ENSMUST00000212634.2	known	0.60	6	4	6	4	y	0.70	7	3	7	3	y	0.67	2	1	2	1	n	0.65	11	6	11	6	y	0.50	10	10	10	10	y	0.00	0	2	0	2	n	0.45	9	11	9	11	y	0.62	5	3	5	3	n	0.33	3	6	3	6	n	0.42	5	7	5	7	y	0.38	3	5	3	5	n	0.50	3	3	3	3	n	ENSMUSG00000005699.17	Pard6a	chr8	protein_coding	par-6 family cell polarity regulator alpha
known_NIR_18248	chr8	106444282;106449676	106449481;106454620	-	106444282	106454620	cassetteExon	ENSMUST00000013294.16	known	0.37	3.5	6	4;3	6	y	0.37	7.0	12	4;10	12	y	0.35	13.5	25	12;15	25	y	0.22	4.5	16	4;5	16	y	0.30	10.0	23	11;9	23	y	0.24	5.0	16	6;4	16	y	0.26	9.0	26	8;10	26	y	0.24	4.0	13	3;5	13	y	0.33	5.0	10	2;8	10	y	0.54	10.5	9	16;5	9	y	0.27	6.5	18	8;5	18	y	0.24	5.0	16	5;5	16	y	ENSMUSG00000013150.16	Gfod2	chr8	protein_coding	glucose-fructose oxidoreductase domain containing 2
known_NIR_18249	chr8	106575531;106575687	106575645;106575819	-	106575531	106575819	cassetteExon	ENSMUST00000212431.2	known	1.00	3.0	0	4;2	0	n	1.00	4.0	0	5;3	0	n	1.00	5.0	0	6;4	0	n	1.00	2.0	0	2;2	0	n	1.00	6.0	0	5;7	0	n	0.54	3.5	3	3;4	3	y	1.00	6.0	0	8;4	0	n	1.00	2.5	0	5;0	0	n	1.00	4.5	0	7;2	0	n	0.75	3.0	1	3;3	1	n	1.00	6.0	0	6;6	0	n	1.00	1.5	0	2;1	0	n	ENSMUSG00000036672.6	Cenpt	chr8	protein_coding	centromere protein T
known_NIR_18250	chr8	106587788	106602166	+	106587337	106602166	A5SS	ENSMUST00000008594.9	known	0.00	0	82	0	82	n	0.01	1	73	1	73	n	0.04	4	95	4	95	y	0.01	1	79	1	79	n	0.01	1	99	1	99	n	0.00	0	51	0	51	n	0.00	0	97	0	97	n	0.01	1	72	1	72	n	0.01	1	66	1	66	n	0.00	0	83	0	83	n	0.00	0	60	0	60	n	0.04	3	66	3	66	y	ENSMUSG00000008450.9	Nutf2	chr8	protein_coding	nuclear transport factor 2
known_NIR_18251	chr8	106614677	106614750	+	106614677	106614753	A3SS	ENSMUST00000040254.16	known	0.22	4	14	4	14	y	0.36	4	7	4	7	y	0.21	7	26	7	26	y	0.13	2	13	2	13	y	0.06	2	32	2	32	y	0.20	3	12	3	12	y	0.20	5	20	5	20	y	0.33	7	14	7	14	y	0.25	4	12	4	12	y	0.16	5	26	5	26	y	0.00	0	19	0	19	n	0.05	1	20	1	20	n	ENSMUSG00000036270.17	Edc4	chr8	protein_coding	enhancer of mRNA decapping 4
known_NIR_18252	chr8	106615150	106615228	+	106615150	106615231	A3SS	ENSMUST00000040254.16	known	0.58	11	8	11	8	y	0.60	6	4	6	4	y	0.57	16	12	16	12	y	0.17	3	15	3	15	y	0.35	7	13	7	13	y	0.33	5	10	5	10	y	0.33	7	14	7	14	y	0.27	3	8	3	8	y	0.64	7	4	7	4	y	0.42	8	11	8	11	y	0.47	9	10	9	10	y	0.44	7	9	7	9	y	ENSMUSG00000036270.17	Edc4	chr8	protein_coding	enhancer of mRNA decapping 4
known_NIR_18253	chr8	106616172	106616305	+	106616172	106616257	A3SS	ENSMUST00000040254.16	known	0.24	4	13	4	13	y	0.22	6	21	6	21	y	0.23	6	20	6	20	y	0.24	6	19	6	19	y	0.38	13	21	13	21	y	0.20	3	12	3	12	y	0.21	6	22	6	22	y	0.25	6	18	6	18	y	0.23	7	23	7	23	y	0.11	3	25	3	25	y	0.16	5	27	5	27	y	0.35	12	22	12	22	y	ENSMUSG00000036270.17	Edc4	chr8	protein_coding	enhancer of mRNA decapping 4
known_NIR_18254	chr8	106687402	106692551	-	106687402	106692557	A5SS	ENSMUST00000116429.9	known	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.05	2	38	2	38	y	0.00	0	17	0	17	n	0.00	0	33	0	33	n	0.00	0	20	0	20	n	0.00	0	18	0	18	n	0.00	0	19	0	19	n	0.00	0	6	0	6	n	0.00	0	25	0	25	n	0.00	0	5	0	5	n	0.00	0	15	0	15	n	ENSMUSG00000017765.18	Slc12a4	chr8	protein_coding	solute carrier family 12, member 4
known_NIR_18255	chr8	106716650	106718280	-	106716650	106717228	A5SS&ES	ENSMUST00000081998.13	known	0.00	0	5	0	5	n	-	-	-	-	-	-	0.16	3	16	3	16	y	0.00	0	1	0	1	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.60	3	2	3	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000115067.2	Dpep2	chr8	protein_coding	dipeptidase 2
known_NIR_18256	chr8	106716650;106717542	106717228;106718280	-	106716650	106718280	cassetteExon	ENSMUST00000117555.8	known	1.00	3.0	0	5;1	0	n	-	-	-	-	-	-	0.76	9.5	3	16;3	3	y	1.00	0.5	0	1;0	0	n	1.00	6.0	0	8;4	0	n	1.00	2.0	0	0;4	0	n	0.25	1.0	3	2;0	3	n	1.00	1.5	0	2;1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000053687.16	Dpep2	chr8	protein_coding	dipeptidase 2
known_NIR_18257	chr8	106757075	106760355	+	106757075;106758373	106758330;106760355	ES	ENSMUST00000034375.11	known	0.05	1	18.0	1	20;16	n	0.00	0	17.5	0	14;21	n	0.11	4	31.5	4	30;33	y	0.00	0	16.5	0	16;17	n	0.04	1	27.0	1	26;28	n	0.04	1	23.5	1	22;25	n	0.12	4	29.5	4	27;32	y	0.00	0	29.0	0	21;37	n	0.06	1	16.0	1	17;15	n	0.00	0	28.0	0	29;27	n	0.00	0	23.0	0	20;26	n	0.00	0	15.0	0	17;13	n	ENSMUSG00000031901.13	Dus2	chr8	protein_coding	dihydrouridine synthase 2
known_NIR_18258	chr8	106835761;106846057	106845954;106854550	+	106835761	106854550	cassetteExon	ENSMUST00000212742.2	known	0.09	4.0	41	6;2	41	y	0.09	1.5	16	1;2	16	n	0.14	6.5	39	9;4	39	y	0.27	9.5	26	14;5	26	y	0.12	6.0	42	8;4	42	y	0.12	2.0	14	2;2	14	y	0.12	5.5	42	8;3	42	y	0.13	3.0	20	4;2	20	y	0.08	2.5	27	4;1	27	n	0.13	5.0	34	8;2	34	y	0.14	3.5	22	6;1	22	n	0.16	6.5	35	7;6	35	y	ENSMUSG00000031902.11	Nfatc3	chr8	protein_coding	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3
known_NIR_18259	chr8	106859568	106859641	-	106859539	106859641	A3SS	ENSMUST00000115979.9	known	0.05	8	158	8	158	y	0.05	6	117	6	117	y	0.01	2	179	2	179	y	0.02	4	206	4	206	y	0.02	6	284	6	284	y	0.00	0	125	0	125	n	0.02	4	214	4	214	y	0.05	6	115	6	115	y	0.03	4	146	4	146	y	0.02	4	176	4	176	y	0.03	4	155	4	155	y	0.06	11	185	11	185	y	ENSMUSG00000084128.11	Esrp2	chr8	protein_coding	epithelial splicing regulatory protein 2
known_NIR_18260	chr8	106860518	106860592	-	106860521	106860592	A3SS	ENSMUST00000115979.9	known	0.19	23	95	23	95	y	0.19	23	100	23	100	y	0.16	24	128	24	128	y	0.15	27	155	27	155	y	0.17	44	214	44	214	y	0.17	14	67	14	67	y	0.14	22	135	22	135	y	0.12	12	88	12	88	y	0.19	26	108	26	108	y	0.18	29	132	29	132	y	0.20	25	103	25	103	y	0.20	36	148	36	148	y	ENSMUSG00000084128.11	Esrp2	chr8	protein_coding	epithelial splicing regulatory protein 2
known_NIR_18261	chr8	106863982;106864176	106864101;106864460	+	106863982	106864460	cassetteExon	ENSMUST00000137995.8	known	0.26	19.0	53	21;17	53	y	0.25	12.5	37	11;14	37	y	0.11	5.0	39	6;4	39	y	0.31	25.5	57	19;32	57	y	0.42	45.0	63	46;44	63	y	0.23	9.0	30	10;8	30	y	0.30	22.5	52	17;28	52	y	0.19	9.0	39	8;10	39	y	0.25	17.5	53	21;14	53	y	0.32	36.5	78	33;40	78	y	0.27	24.0	65	28;20	65	y	0.38	37.0	61	36;38	61	y	ENSMUSG00000086390.8	1810019D21Rik	chr8	lncRNA	RIKEN cDNA 1810019D21 gene
known_NIR_18262	chr8	106887311	106887716	+	106887311	106887841	A3SS	ENSMUST00000212963.2	known	1.00	21	0	21	0	n	1.00	13	0	13	0	n	0.94	15	1	15	1	n	1.00	26	0	26	0	n	0.95	35	2	35	2	y	0.67	2	1	2	1	n	1.00	22	0	22	0	n	1.00	11	0	11	0	n	1.00	29	0	29	0	n	0.89	24	3	24	3	y	0.92	24	2	24	2	y	1.00	25	0	25	0	n	ENSMUSG00000031903.8	Pla2g15	chr8	protein_coding	phospholipase A2, group XV
known_NIR_18263	chr8	106905039	106905734	+	106895586	106905734	A5SS	ENSMUST00000034378.5	known	-	-	-	-	-	-	-	-	-	-	-	-	0.15	2	11	2	11	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.50	2	2	2	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031904.6	Slc7a6	chr8	protein_coding	solute carrier family 7 (cationic amino acid transporter, y+ system), member 6
known_NIR_18264	chr8	106964589	106967818	+	106964034	106967818	A5SS	ENSMUST00000071592.12	known	0.00	0	31	0	31	n	0.00	0	17	0	17	n	0.04	1	26	1	26	n	0.00	0	22	0	22	n	0.00	0	38	0	38	n	0.09	1	10	1	10	n	0.00	0	34	0	34	n	0.00	0	14	0	14	n	0.00	0	20	0	20	n	0.06	2	29	2	29	y	0.00	0	27	0	27	n	0.04	2	44	2	44	y	ENSMUSG00000060098.12	Prmt7	chr8	protein_coding	protein arginine N-methyltransferase 7
known_NIR_18265	chr8	106992756	107007527	-	106992756	107014765	A5SS	ENSMUST00000067512.8	known	1.00	4	0	4	0	n	1.00	5	0	5	0	n	0.91	10	1	10	1	n	0.94	16	1	16	1	n	1.00	7	0	7	0	n	0.86	6	1	6	1	n	0.70	7	3	7	3	y	1.00	11	0	11	0	n	-	-	-	-	-	-	1.00	7	0	7	0	n	1.00	3	0	3	0	n	1.00	2	0	2	0	n	ENSMUSG00000031906.10	Smpd3	chr8	protein_coding	sphingomyelin phosphodiesterase 3, neutral
known_NIR_18266	chr8	107613158	107613933	-	107613158;107613669	107613552;107613933	ES	ENSMUST00000177068.8	known	0.09	4	40.0	4	49;31	y	0.00	0	46.5	0	54;39	n	0.07	6	83.0	6	103;63	y	0.06	4	61.0	4	88;34	y	0.03	2	65.5	2	80;51	y	0.00	0	47.5	0	59;36	n	0.00	0	51.5	0	64;39	n	0.11	4	31.0	4	43;19	y	0.03	1	29.5	1	40;19	n	0.00	0	71.0	0	103;39	n	0.02	1	44.0	1	55;33	n	0.06	5	74.5	5	93;56	y	ENSMUSG00000046691.15	Chtf8	chr8	protein_coding	CTF8, chromosome transmission fidelity factor 8
known_NIR_18267	chr8	107613158	107613933	-	107613158;107613683	107613552;107613933	ES	ENSMUST00000176515.2	known	0.14	4	25.5	4	49;2	y	0.00	0	27.0	0	54;0	n	0.10	6	53.5	6	103;4	y	0.08	4	46.5	4	88;5	y	0.05	2	42.0	2	80;4	y	0.00	0	29.5	0	59;0	n	0.00	0	33.0	0	64;2	n	0.16	4	21.5	4	43;0	n	0.04	1	21.5	1	40;3	n	0.00	0	52.0	0	103;1	n	0.03	1	29.0	1	55;3	n	0.09	5	48.0	5	93;3	y	ENSMUSG00000046691.15	Chtf8	chr8	protein_coding	CTF8, chromosome transmission fidelity factor 8
known_NIR_18268	chr8	107613158;107613988	107613552;107620133	-	107613158	107620133	cassetteExon	ENSMUST00000169312.2	known	1.00	45.0	0	49;41	0	n	1.00	41.5	0	54;29	0	n	1.00	87.0	0	103;71	0	n	1.00	68.5	0	88;49	0	n	1.00	70.0	0	80;60	0	n	1.00	53.0	0	59;47	0	n	0.97	61.5	2	64;59	2	y	1.00	35.0	0	43;27	0	n	1.00	32.5	0	40;25	0	n	1.00	76.0	0	103;49	0	n	1.00	46.5	0	55;38	0	n	1.00	82.5	0	93;72	0	n	ENSMUSG00000117748.2	Derpc	chr8	protein_coding	DERPC proline and glycine rich nuclear protein
known_NIR_18269	chr8	107613158;107613988	107613933;107620133	-	107613158;107613669	107613552;107620133	MXE	ENSMUST00000176090.2	known	0.47	22.5	25.5	4;41	49;2	y	0.35	14.5	27.0	0;29	54;0	n	0.43	38.5	51.5	6;71	103;0	n	0.37	26.5	44.5	4;49	88;1	n	0.43	31.0	41.0	2;60	80;2	y	0.44	23.5	29.5	0;47	59;0	n	0.48	29.5	32.5	0;59	64;1	n	0.42	15.5	21.5	4;27	43;0	n	0.39	13.0	20.5	1;25	40;1	n	0.32	24.5	52.0	0;49	103;1	n	0.41	19.5	28.0	1;38	55;1	n	0.45	38.5	46.5	5;72	93;0	n	ENSMUSG00000046691.15	Chtf8	chr8	protein_coding	CTF8, chromosome transmission fidelity factor 8
known_NIR_18270	chr8	107613669	107620133	-	107613669;107613988	107613933;107620133	ES	ENSMUST00000177068.8	known	0.05	2	36.0	2	31;41	y	0.00	0	34.0	0	39;29	n	0.00	0	67.0	0	63;71	n	0.02	1	41.5	1	34;49	n	0.03	2	55.5	2	51;60	y	0.00	0	41.5	0	36;47	n	0.02	1	49.0	1	39;59	n	0.00	0	23.0	0	19;27	n	0.04	1	22.0	1	19;25	n	0.02	1	44.0	1	39;49	n	0.03	1	35.5	1	33;38	n	0.00	0	64.0	0	56;72	n	ENSMUSG00000046691.15	Chtf8	chr8	protein_coding	CTF8, chromosome transmission fidelity factor 8
known_NIR_18271	chr8	107613669	107620133	-	107613988	107620133	A3SS&ES	ENSMUST00000176515.2	known	0.05	2	41	2	41	y	0.00	0	29	0	29	n	0.00	0	71	0	71	n	0.02	1	49	1	49	n	0.03	2	60	2	60	y	0.00	0	47	0	47	n	0.02	1	59	1	59	n	0.00	0	27	0	27	n	0.04	1	25	1	25	n	0.02	1	49	1	49	n	0.03	1	38	1	38	n	0.00	0	72	0	72	n	ENSMUSG00000046691.15	Chtf8	chr8	protein_coding	CTF8, chromosome transmission fidelity factor 8
known_NIR_18272	chr8	107613683	107613933	-	107613669	107613933	A3SS	ENSMUST00000177068.8	known	0.06	2	31	2	31	y	0.00	0	39	0	39	n	0.06	4	63	4	63	y	0.13	5	34	5	34	y	0.07	4	51	4	51	y	0.00	0	36	0	36	n	0.05	2	39	2	39	y	0.00	0	19	0	19	n	0.14	3	19	3	19	y	0.03	1	39	1	39	n	0.08	3	33	3	33	y	0.05	3	56	3	56	y	ENSMUSG00000046691.15	Chtf8	chr8	protein_coding	CTF8, chromosome transmission fidelity factor 8
known_NIR_18273	chr8	107620344	107621223	+	107620604	107621223	A5SS	ENSMUST00000212272.2	known	1.00	11	0	11	0	n	1.00	7	0	7	0	n	0.97	33	1	33	1	n	0.86	12	2	12	2	y	1.00	19	0	19	0	n	1.00	11	0	11	0	n	1.00	16	0	16	0	n	1.00	12	0	12	0	n	1.00	9	0	9	0	n	0.88	30	4	30	4	y	1.00	6	0	6	0	n	1.00	18	0	18	0	n	ENSMUSG00000041438.9	Utp4	chr8	protein_coding	UTP4 small subunit processome component
known_NIR_18274	chr8	107773903	107775415	-	107773903	107774693	5pMXE	ENSMUST00000055316.10	known	0.04	5	133	5	133	y	0.03	5	158	5	158	y	0.10	14	130	14	130	y	0.05	8	151	8	151	y	0.00	0	180	0	180	n	0.08	6	69	6	69	y	0.08	15	171	15	171	y	0.03	2	68	2	68	y	0.04	4	107	4	107	y	0.04	7	174	7	174	y	0.04	6	163	6	163	y	0.00	0	142	0	142	n	ENSMUSG00000078931.5	Pdf	chr8	protein_coding	peptide deformylase (mitochondrial)
known_NIR_18275	chr8	107780861	107782760	-	107780861	107782893	A5SS	ENSMUST00000095517.12	known	0.00	0	49	0	49	n	0.07	2	26	2	26	y	0.02	1	62	1	62	n	0.00	0	56	0	56	n	0.00	0	60	0	60	n	0.00	0	40	0	40	n	0.00	0	54	0	54	n	0.00	0	37	0	37	n	0.00	0	29	0	29	n	0.02	1	45	1	45	n	0.00	0	42	0	42	n	0.00	0	37	0	37	n	ENSMUSG00000031916.18	Cog8	chr8	protein_coding	component of oligomeric golgi complex 8
known_NIR_18276	chr8	107799277	107799354	-	107799277	107803242	A5SS	ENSMUST00000133925.8	known	0.36	5	9	5	9	y	0.08	1	11	1	11	n	0.14	3	18	3	18	y	0.19	3	13	3	13	y	0.05	1	19	1	19	n	0.43	3	4	3	4	n	0.05	1	18	1	18	n	0.14	1	6	1	6	n	0.21	3	11	3	11	y	0.00	0	19	0	19	n	0.00	0	13	0	13	n	0.15	3	17	3	17	y	ENSMUSG00000031921.18	Terf2	chr8	protein_coding	telomeric repeat binding factor 2
known_NIR_18277	chr8	107799277	107803511	-	107799277	107803242	A5SS	ENSMUST00000133925.8	known	0.18	2	9	2	9	y	0.15	2	11	2	11	y	0.00	0	18	0	18	n	0.19	3	13	3	13	y	0.17	4	19	4	19	y	0.00	0	4	0	4	n	0.00	0	18	0	18	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.05	1	19	1	19	n	0.00	0	13	0	13	n	0.15	3	17	3	17	y	ENSMUSG00000031921.18	Terf2	chr8	protein_coding	telomeric repeat binding factor 2
known_NIR_18278	chr8	107803631	107806001	-	107803628	107806001	A3SS	ENSMUST00000133925.8	known	0.83	24	5	24	5	y	0.41	7	10	7	10	y	0.00	0	5	0	5	n	0.36	5	9	5	9	y	0.67	24	12	24	12	y	0.60	6	4	6	4	y	0.35	7	13	7	13	y	0.44	8	10	8	10	y	0.64	9	5	9	5	y	0.59	10	7	10	7	y	0.50	7	7	7	7	y	0.67	12	6	12	6	y	ENSMUSG00000031921.18	Terf2	chr8	protein_coding	telomeric repeat binding factor 2
known_NIR_18279	chr8	107806101;107806426	107806327;107807725	-	107806101	107807725	cassetteExon	ENSMUST00000133925.8	known	0.02	0.5	24	1;0	24	n	0.00	0.0	10	0;0	10	n	0.00	0.0	23	0;0	23	n	0.29	2.0	5	2;2	5	n	0.00	0.0	29	0;0	29	n	0.04	0.5	12	1;0	12	n	0.09	2.5	24	0;5	24	n	0.00	0.0	4	0;0	4	n	0.15	3.0	17	3;3	17	y	0.00	0.0	7	0;0	7	n	0.00	0.0	8	0;0	8	n	0.00	0.0	10	0;0	10	n	ENSMUSG00000031921.18	Terf2	chr8	protein_coding	telomeric repeat binding factor 2
known_NIR_18280	chr8	107892604	107896443	+	107877505	107896443	A5SS	ENSMUST00000034400.5	known	0.00	0	438	0	438	n	0.00	0	224	0	224	n	0.00	1	360	1	360	n	0.00	2	503	2	503	y	0.00	0	709	0	709	n	0.00	0	329	0	329	n	0.00	0	518	0	518	n	0.00	0	284	0	284	n	0.00	0	441	0	441	n	0.00	0	747	0	747	n	0.00	0	529	0	529	n	0.00	2	691	2	691	y	ENSMUSG00000031924.5	Cyb5b	chr8	protein_coding	cytochrome b5 type B
known_NIR_18281	chr8	108020530	108051271	+	108020530;108022266	108022213;108051271	ES	ENSMUST00000151582.2	known	0.44	2	2.5	2	2;3	n	0.40	2	3.0	2	2;4	n	0.32	3	6.5	3	7;6	y	0.24	2	6.5	2	2;11	y	0.18	2	9.0	2	8;10	y	0.24	2	6.5	2	6;7	y	0.31	2	4.5	2	5;4	y	0.50	1	1.0	1	2;0	n	0.42	4	5.5	4	6;5	y	0.33	1	2.0	1	2;2	n	0.25	1	3.0	1	3;3	n	0.41	6	8.5	6	10;7	y	ENSMUSG00000003847.17	Nfat5	chr8	protein_coding	nuclear factor of activated T cells 5
known_NIR_18282	chr8	108051396	108065441	+	108051396;108064988	108064927;108065441	ES	ENSMUST00000154474.8	known	0.29	2	5.0	2	7;3	y	0.00	0	3.0	0	5;1	n	0.40	3	4.5	3	5;4	y	0.14	1	6.0	1	6;6	n	0.07	1	12.5	1	14;11	n	0.00	0	3.5	0	1;6	n	0.00	0	8.0	0	8;8	n	0.25	1	3.0	1	2;4	n	0.22	1	3.5	1	3;4	n	0.17	1	5.0	1	3;7	n	0.00	0	4.0	0	4;4	n	0.21	2	7.5	2	7;8	y	ENSMUSG00000003847.17	Nfat5	chr8	protein_coding	nuclear factor of activated T cells 5
known_NIR_18283	chr8	108085398	108088379	+	108085398	108088376	A3SS	ENSMUST00000154474.8	known	0.63	12	7	12	7	y	1.00	3	0	3	0	n	0.43	6	8	6	8	y	0.18	2	9	2	9	y	0.53	10	9	10	9	y	0.73	8	3	8	3	y	0.80	8	2	8	2	y	0.67	6	3	6	3	n	0.67	6	3	6	3	n	0.35	6	11	6	11	y	0.50	4	4	4	4	n	0.62	15	9	15	9	y	ENSMUSG00000003847.17	Nfat5	chr8	protein_coding	nuclear factor of activated T cells 5
known_NIR_18284	chr8	108148244	108151384	-	108148244	108151370	A5SS	ENSMUST00000169311.8	known	0.06	1	16	1	16	n	0.10	2	18	2	18	y	0.06	2	29	2	29	y	0.06	1	17	1	17	n	0.00	0	36	0	36	n	0.00	0	26	0	26	n	0.00	0	32	0	32	n	0.00	0	21	0	21	n	0.00	0	13	0	13	n	0.00	0	16	0	16	n	0.12	2	14	2	14	y	0.00	0	26	0	26	n	ENSMUSG00000003848.15	Nob1	chr8	protein_coding	NIN1/RPN12 binding protein 1 homolog
known_NIR_18285	chr8	10976995;10977521	10977285;10978020	-	10976995	10978020	cassetteExon	ENSMUST00000040608.5	known	0.00	0.0	9	0;0	9	n	0.00	0.0	2	0;0	2	n	0.08	25.5	307	21;30	307	y	0.00	0.0	1	0;0	1	n	0.03	1.0	36	0;2	36	n	0.06	11.5	177	3;20	177	y	0.06	4.0	68	3;5	68	y	0.08	5.0	60	3;7	60	y	1.00	0.5	0	1;0	0	n	0.00	0.0	3	0;0	3	n	0.33	0.5	1	1;0	1	n	0.00	0.0	4	0;0	4	n	ENSMUSG00000038917.5	3930402G23Rik	chr8	lncRNA	RIKEN cDNA 3930402G23 gene
known_NIR_18286	chr8	110304194	110305089	-	110304194	110305582	A5SS	ENSMUST00000212918.2	known	0.57	48	36	48	36	y	0.73	74	27	74	27	y	0.85	393	69	393	69	y	0.68	48	23	48	23	y	0.72	158	61	158	61	y	0.79	267	72	267	72	y	0.74	137	48	137	48	y	0.82	170	38	170	38	y	0.71	39	16	39	16	y	0.66	51	26	51	26	y	0.68	34	16	34	16	y	0.86	56	9	56	9	y	ENSMUSG00000031722.11	Hp	chr8	protein_coding	haptoglobin
known_NIR_18287	chr8	110304194	110305089	-	110304194	110305642	A5SS	ENSMUST00000074898.8	known	0.00	48	39929	48	39929	y	0.00	74	47702	74	47702	y	0.00	393	104989	393	104989	y	0.00	48	41328	48	41328	y	0.00	158	97777	158	97777	y	0.00	267	69163	267	69163	y	0.00	137	67072	137	67072	y	0.00	170	74217	170	74217	y	0.00	39	28421	39	28421	y	0.00	51	45451	51	45451	y	0.00	34	31251	34	31251	y	0.00	56	33522	56	33522	y	ENSMUSG00000031722.11	Hp	chr8	protein_coding	haptoglobin
known_NIR_18288	chr8	110304194	110305582	-	110304194	110305642	A5SS	ENSMUST00000074898.8	known	0.00	36	39929	36	39929	y	0.00	27	47702	27	47702	y	0.00	69	104989	69	104989	y	0.00	23	41328	23	41328	y	0.00	61	97777	61	97777	y	0.00	72	69163	72	69163	y	0.00	48	67072	48	67072	y	0.00	38	74217	38	74217	y	0.00	16	28421	16	28421	y	0.00	26	45451	26	45451	y	0.00	16	31251	16	31251	y	0.00	9	33522	9	33522	y	ENSMUSG00000031722.11	Hp	chr8	protein_coding	haptoglobin
known_NIR_18289	chr8	110333052	110335172	-	110333052	110334984	A5SS	ENSMUST00000123605.9	known	0.24	4	13	4	13	y	0.08	1	11	1	11	n	0.25	5	15	5	15	y	0.09	1	10	1	10	n	0.21	3	11	3	11	y	0.41	7	10	7	10	y	0.33	2	4	2	4	n	0.00	0	5	0	5	n	0.07	1	13	1	13	n	0.38	6	10	6	10	y	0.22	2	7	2	7	n	0.42	8	11	8	11	y	ENSMUSG00000031730.19	Dhodh	chr8	protein_coding	dihydroorotate dehydrogenase
known_NIR_18290	chr8	110402056;110402434	110402275;110403390	-	110402056	110403390	cassetteExon	ENSMUST00000034164.6	known	0.14	10.0	60	15;5	60	y	0.12	9.0	65	8;10	65	y	0.30	26.0	60	28;24	60	y	0.08	5.0	59	5;5	59	y	0.11	13.0	102	18;8	102	y	0.24	12.0	39	16;8	39	y	0.11	11.5	93	15;8	93	y	0.18	10.0	46	11;9	46	y	0.12	8.5	61	6;11	61	y	0.11	13.0	105	15;11	105	y	0.10	10.0	86	14;6	86	y	0.14	16.5	102	19;14	102	y	ENSMUSG00000031729.7	Ist1	chr8	protein_coding	increased sodium tolerance 1 homolog (yeast)
known_NIR_18291	chr8	110433051;110434776	110434661;110436043	+	110433051	110436043	cassetteExon	ENSMUST00000212964.2	known	1.00	1.5	0	1;2	0	n	1.00	2.5	0	1;4	0	n	0.64	7.0	4	5;9	4	y	0.27	1.5	4	1;2	4	n	0.67	6.0	3	5;7	3	y	1.00	1.0	0	2;0	0	n	0.60	4.5	3	5;4	3	y	0.40	2.0	3	0;4	3	n	1.00	1.0	0	2;0	0	n	1.00	4.5	0	2;7	0	n	0.38	2.5	4	2;3	4	n	0.60	1.5	1	0;3	1	n	ENSMUSG00000031728.11	Zfp821	chr8	protein_coding	zinc finger protein 821
known_NIR_18292	chr8	110444519	110447827	+	110444538	110447827	A5SS	ENSMUST00000212964.2	known	0.22	2	7	2	7	n	0.80	4	1	4	1	n	0.46	11	13	11	13	y	0.71	5	2	5	2	n	0.53	8	7	8	7	y	1.00	3	0	3	0	n	0.60	6	4	6	4	y	0.33	2	4	2	4	n	0.10	1	9	1	9	n	0.38	3	5	3	5	n	0.33	3	6	3	6	n	0.50	4	4	4	4	n	ENSMUSG00000031728.11	Zfp821	chr8	protein_coding	zinc finger protein 821
known_NIR_18293	chr8	110461995	110464263	-	110461995;110462157	110462092;110464263	ES	ENSMUST00000093162.4	known	0.71	5	2.0	5	3;1	n	0.14	1	6.0	1	8;4	n	0.40	4	6.0	4	9;3	y	0.40	5	7.5	5	7;8	y	0.78	20	5.5	20	7;4	y	0.44	4	5.0	4	7;3	y	0.18	2	9.0	2	10;8	y	0.21	2	7.5	2	9;6	y	0.26	4	11.5	4	15;8	y	0.00	0	6.5	0	10;3	n	0.27	3	8.0	3	9;7	y	0.64	9	5.0	9	3;7	y	ENSMUSG00000069895.5	Atxn1l	chr8	protein_coding	ataxin 1-like
known_NIR_18294	chr8	110529782	110532105	+	110529782	110545550	A3SS	ENSMUST00000093157.13	known	0.00	0	10	0	10	n	0.06	1	16	1	16	n	0.00	0	60	0	60	n	0.00	0	43	0	43	n	0.00	0	45	0	45	n	0.02	1	42	1	42	n	0.06	2	34	2	34	y	0.03	1	33	1	33	n	0.00	0	24	0	24	n	0.04	2	48	2	48	y	0.07	1	13	1	13	n	0.00	0	36	0	36	n	ENSMUSG00000031731.17	Ap1g1	chr8	protein_coding	adaptor protein complex AP-1, gamma 1 subunit
known_NIR_18295	chr8	110556307	110559349	+	110556307;110557253	110557245;110559349	ES	ENSMUST00000093157.13	known	0.89	33	4.0	33	4;4	y	0.94	16	1.0	16	1;1	n	0.94	48	3.0	48	2;4	y	0.95	29	1.5	29	2;1	n	0.90	56	6.5	56	6;7	y	0.95	36	2.0	36	2;2	y	0.91	34	3.5	34	4;3	y	0.94	47	3.0	47	3;3	y	0.94	15	1.0	15	1;1	n	0.94	42	2.5	42	2;3	y	0.89	34	4.0	34	4;4	y	0.95	49	2.5	49	2;3	y	ENSMUSG00000031731.17	Ap1g1	chr8	protein_coding	adaptor protein complex AP-1, gamma 1 subunit
known_NIR_18296	chr8	110681373	110686345	-	110675294	110686345	A3SS	ENSMUST00000001722.14	known	0.00	0	1	0	1	n	1.00	2	0	2	0	n	0.71	15	6	15	6	y	0.89	8	1	8	1	n	1.00	4	0	4	0	n	0.89	8	1	8	1	n	0.83	5	1	5	1	n	1.00	10	0	10	0	n	1.00	2	0	2	0	n	0.25	1	3	1	3	n	1.00	3	0	3	0	n	0.40	2	3	2	3	n	ENSMUSG00000001672.15	Marveld3	chr8	protein_coding	MARVEL (membrane-associating) domain containing 3
known_NIR_18297	chr8	110717182	110718105	+	110717152	110718105	A5SS	ENSMUST00000001720.14	known	0.01	45	5289	45	5289	y	0.00	17	3500	17	3500	y	0.01	59	5599	59	5599	y	0.01	46	5153	46	5153	y	0.01	24	2760	24	2760	y	0.01	26	2879	26	2879	y	0.01	25	2922	25	2922	y	0.01	22	2159	22	2159	y	0.01	22	2980	22	2980	y	0.01	28	4608	28	4608	y	0.01	18	2461	18	2461	y	0.01	34	4254	34	4254	y	ENSMUSG00000001670.14	Tat	chr8	protein_coding	tyrosine aminotransferase
known_NIR_18298	chr8	111380309	111409124	+	111380309;111397814	111397658;111409124	ES	ENSMUST00000213003.2	known	0.08	3	32.5	3	36;29	y	0.05	1	17.5	1	14;21	n	0.03	1	28.5	1	30;27	n	0.00	0	40.5	0	42;39	n	0.00	0	31.5	0	25;38	n	0.00	0	17.5	0	21;14	n	0.00	0	26.5	0	26;27	n	0.07	1	13.5	1	15;12	n	0.00	0	17.5	0	16;19	n	0.07	3	41.5	3	43;40	y	0.03	1	32.5	1	23;42	n	0.03	1	38.5	1	40;37	n	ENSMUSG00000010936.12	Vac14	chr8	protein_coding	Vac14 homolog (S. cerevisiae)
known_NIR_18299	chr8	111437124	111438225	+	111437188	111438225	A5SS	ENSMUST00000213003.2	known	1.00	59	0	59	0	n	1.00	42	0	42	0	n	1.00	43	0	43	0	n	0.96	49	2	49	2	y	1.00	35	0	35	0	n	1.00	22	0	22	0	n	1.00	39	0	39	0	n	1.00	24	0	24	0	n	1.00	24	0	24	0	n	1.00	63	0	63	0	n	0.98	43	1	43	1	n	1.00	49	0	49	0	n	ENSMUSG00000010936.12	Vac14	chr8	protein_coding	Vac14 homolog (S. cerevisiae)
known_NIR_18300	chr8	111576582	111578034	+	111576582	111577968	A3SS	ENSMUST00000165867.8	known	0.00	0	87	0	87	n	0.00	0	38	0	38	n	0.00	0	61	0	61	n	0.00	0	93	0	93	n	0.00	0	107	0	107	n	0.00	0	64	0	64	n	0.00	0	99	0	99	n	0.00	0	62	0	62	n	0.00	0	62	0	62	n	0.02	3	136	3	136	y	0.00	0	75	0	75	n	0.00	0	107	0	107	n	ENSMUSG00000031753.17	Cog4	chr8	protein_coding	component of oligomeric golgi complex 4
known_NIR_18301	chr8	111590016	111593193	+	111590016;111592727	111592609;111593193	ES	ENSMUST00000165867.8	known	0.03	3	95.5	3	90;101	y	0.04	3	68.5	3	63;74	y	0.08	5	61.5	5	56;67	y	0.00	0	100.5	0	103;98	n	0.00	0	106.5	0	94;119	n	0.00	0	52.0	0	57;47	n	0.06	7	113.5	7	110;117	y	0.00	0	49.0	0	48;50	n	0.03	3	85.0	3	92;78	y	0.00	0	127.5	0	125;130	n	0.00	0	81.5	0	88;75	n	0.00	0	92.5	0	90;95	n	ENSMUSG00000031753.17	Cog4	chr8	protein_coding	component of oligomeric golgi complex 4
known_NIR_18302	chr8	111593359	111594886	+	111593359	111594834	A3SS	ENSMUST00000165867.8	known	0.06	6	97	6	97	y	0.11	11	86	11	86	y	0.00	0	78	0	78	n	0.09	15	155	15	155	y	0.02	3	134	3	134	y	0.00	0	58	0	58	n	0.00	0	126	0	126	n	0.03	2	70	2	70	y	0.00	0	88	0	88	n	0.00	0	171	0	171	n	0.10	13	114	13	114	y	0.00	0	120	0	120	n	ENSMUSG00000031753.17	Cog4	chr8	protein_coding	component of oligomeric golgi complex 4
known_NIR_18303	chr8	111594999	111605638	+	111594999;111600840	111600778;111605638	ES	ENSMUST00000165867.8	known	0.00	0	131.5	0	125;138	n	0.04	4	97.5	4	94;101	y	0.00	0	103.5	0	98;109	n	0.00	0	122.0	0	124;120	n	0.00	0	154.5	0	147;162	n	0.00	0	68.0	0	61;75	n	0.00	0	159.5	0	154;165	n	0.00	0	65.0	0	67;63	n	0.00	0	132.0	0	120;144	n	0.00	0	174.5	0	181;168	n	0.00	0	150.5	0	159;142	n	0.01	1	130.5	1	148;113	n	ENSMUSG00000031753.17	Cog4	chr8	protein_coding	component of oligomeric golgi complex 4
known_NIR_18304	chr8	111616372	111616808	-	111616470	111616808	A3SS	ENSMUST00000212971.2	known	0.86	12	2	12	2	y	1.00	14	0	14	0	n	0.75	9	3	9	3	y	0.77	24	7	24	7	y	0.92	12	1	12	1	n	1.00	8	0	8	0	n	0.67	10	5	10	5	y	0.79	15	4	15	4	y	1.00	9	0	9	0	n	0.91	29	3	29	3	y	0.90	9	1	9	1	n	0.87	13	2	13	2	y	ENSMUSG00000033703.10	Fcsk	chr8	protein_coding	fucose kinase
known_NIR_18305	chr8	111760576	111763541	+	111760540	111763541	A5SS	ENSMUST00000125268.2	known	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.10	2	19	2	19	y	0.04	1	25	1	25	n	0.00	0	28	0	28	n	0.00	0	4	0	4	n	0.11	2	16	2	16	y	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	18	0	18	n	0.20	2	8	2	8	y	0.05	1	18	1	18	n	ENSMUSG00000031960.15	Aars	chr8	protein_coding	alanyl-tRNA synthetase
known_NIR_18306	chr8	111760576	111763541	+	111760895	111763541	A5SS	ENSMUST00000034441.8	known	0.00	0	138	0	138	n	0.00	0	113	0	113	n	0.01	2	257	2	257	y	0.00	1	210	1	210	n	0.00	0	237	0	237	n	0.00	0	99	0	99	n	0.01	2	155	2	155	y	0.00	0	122	0	122	n	0.00	0	140	0	140	n	0.00	0	203	0	203	n	0.01	2	135	2	135	y	0.00	1	209	1	209	n	ENSMUSG00000031960.15	Aars	chr8	protein_coding	alanyl-tRNA synthetase
known_NIR_18307	chr8	111760895	111763541	+	111760540	111763541	A5SS	ENSMUST00000125268.2	known	0.90	138	15	138	15	y	0.92	113	10	113	10	y	0.93	257	19	257	19	y	0.89	210	25	210	25	y	0.89	237	28	237	28	y	0.96	99	4	99	4	y	0.91	155	16	155	16	y	0.92	122	10	122	10	y	0.93	140	11	140	11	y	0.92	203	18	203	18	y	0.94	135	8	135	8	y	0.92	209	18	209	18	y	ENSMUSG00000031960.15	Aars	chr8	protein_coding	alanyl-tRNA synthetase
known_NIR_18308	chr8	111821458	111828446	+	111821458	111828493	A3SS	ENSMUST00000135302.8	known	0.50	1	1	1	1	n	0.75	3	1	3	1	n	1.00	7	0	7	0	n	0.33	2	4	2	4	n	0.63	17	10	17	10	y	0.40	2	3	2	3	n	0.36	5	9	5	9	y	0.00	0	2	0	2	n	0.83	5	1	5	1	n	0.47	7	8	7	8	y	0.75	6	2	6	2	n	0.50	6	6	6	6	y	ENSMUSG00000033624.11	Pdpr	chr8	protein_coding	pyruvate dehydrogenase phosphatase regulatory subunit
known_NIR_18309	chr8	111887442	111888058	-	111887373	111888058	A3SS	ENSMUST00000169020.8	known	0.03	1	38	1	38	n	0.00	0	24	0	24	n	0.10	7	61	7	61	y	0.02	1	41	1	41	n	0.02	1	52	1	52	n	0.03	1	37	1	37	n	0.08	4	48	4	48	y	0.02	1	40	1	40	n	0.00	0	20	0	20	n	0.00	0	49	0	49	n	0.04	1	27	1	27	n	0.00	0	40	0	40	n	ENSMUSG00000003316.15	Glg1	chr8	protein_coding	golgi apparatus protein 1
known_NIR_18310	chr8	112038709	112041597	-	112038709	112041573	A5SS	ENSMUST00000056157.14	known	1.00	11	0	11	0	n	0.89	16	2	16	2	y	0.94	30	2	30	2	y	1.00	21	0	21	0	n	0.95	21	1	21	1	n	1.00	5	0	5	0	n	0.88	14	2	14	2	y	1.00	10	0	10	0	n	0.90	9	1	9	1	n	1.00	14	0	14	0	n	0.79	19	5	19	5	y	0.78	7	2	7	2	n	ENSMUSG00000012519.15	Mlkl	chr8	protein_coding	mixed lineage kinase domain-like
known_NIR_18311	chr8	112185678	112187215	-	112185681	112187215	A3SS	ENSMUST00000038193.15	known	0.00	0	14	0	14	n	0.10	1	9	1	9	n	0.08	2	23	2	23	y	0.00	0	9	0	9	n	0.14	3	19	3	19	y	0.08	1	11	1	11	n	0.00	0	24	0	24	n	0.33	4	8	4	8	y	0.18	4	18	4	18	y	0.19	5	21	5	21	y	0.11	1	8	1	8	n	0.21	4	15	4	15	y	ENSMUSG00000031959.16	Wdr59	chr8	protein_coding	WD repeat domain 59
known_NIR_18312	chr8	112193554;112199318	112199262;112202676	-	112193554	112202676	cassetteExon	ENSMUST00000038193.15	known	0.57	6.5	5	7;6	5	y	1.00	6.0	0	4;8	0	n	0.51	9.5	9	6;13	9	y	0.59	10.0	7	13;7	7	y	0.36	5.0	9	4;6	9	y	0.33	1.5	3	2;1	3	n	0.47	4.5	5	2;7	5	y	0.54	3.5	3	3;4	3	y	0.82	9.0	2	8;10	2	y	0.60	6.0	4	5;7	4	y	0.20	1.5	6	2;1	6	n	0.47	3.5	4	4;3	4	y	ENSMUSG00000031959.16	Wdr59	chr8	protein_coding	WD repeat domain 59
known_NIR_18313	chr8	112264196	112333379	+	112264196	112345838	A3SS	ENSMUST00000171182.8	known	0.88	21	3	21	3	y	0.64	16	9	16	9	y	0.60	12	8	12	8	y	1.00	10	0	10	0	n	0.91	20	2	20	2	y	1.00	9	0	9	0	n	0.63	12	7	12	7	y	1.00	10	0	10	0	n	0.92	12	1	12	1	n	0.85	17	3	17	3	y	0.56	10	8	10	8	y	0.75	24	8	24	8	y	ENSMUSG00000033545.15	Znrf1	chr8	protein_coding	zinc and ring finger 1
known_NIR_18314	chr8	112264196	112335925	+	112333480	112335925	5pMXE	ENSMUST00000173922.2	known	0.80	110	28	110	28	y	0.81	115	27	115	27	y	0.90	202	23	202	23	y	0.84	86	16	86	16	y	0.86	183	31	183	31	y	0.89	117	14	117	14	y	0.88	152	21	152	21	y	0.94	144	9	144	9	y	0.86	90	15	90	15	y	0.84	127	24	127	24	y	0.78	90	25	90	25	y	0.77	151	44	151	44	y	ENSMUSG00000033545.15	Znrf1	chr8	protein_coding	zinc and ring finger 1
known_NIR_18315	chr8	112264196	112345838	+	112264196;112336020	112335925;112345838	ES	ENSMUST00000172856.8	known	0.02	3	130.5	3	110;151	y	0.06	9	132.0	9	115;149	y	0.04	8	217.0	8	202;232	y	0.00	0	112.5	0	86;139	n	0.01	2	209.0	2	183;235	y	0.00	0	135.0	0	117;153	n	0.04	7	185.0	7	152;218	y	0.00	0	149.0	0	144;154	n	0.01	1	106.0	1	90;122	n	0.02	3	141.5	3	127;156	y	0.07	8	115.0	8	90;140	y	0.04	8	193.0	8	151;235	y	ENSMUSG00000033545.15	Znrf1	chr8	protein_coding	zinc and ring finger 1
known_NIR_18316	chr8	112264196	112345838	+	112336020	112345838	5pMXE	ENSMUST00000173819.2	known	0.02	3	151	3	151	y	0.06	9	149	9	149	y	0.03	8	232	8	232	y	0.00	0	139	0	139	n	0.01	2	235	2	235	y	0.00	0	153	0	153	n	0.03	7	218	7	218	y	0.00	0	154	0	154	n	0.01	1	122	1	122	n	0.02	3	156	3	156	y	0.05	8	140	8	140	y	0.03	8	235	8	235	y	ENSMUSG00000033545.15	Znrf1	chr8	protein_coding	zinc and ring finger 1
known_NIR_18317	chr8	112264196;112333480	112333379;112335925	+	112264196	112335925	cassetteExon	ENSMUST00000172856.8	known	0.18	24.5	110	21;28	110	y	0.16	21.5	115	16;27	115	y	0.08	17.5	202	12;23	202	y	0.13	13.0	86	10;16	86	y	0.12	25.5	183	20;31	183	y	0.09	11.5	117	9;14	117	y	0.10	16.5	152	12;21	152	y	0.06	9.5	144	10;9	144	y	0.13	13.5	90	12;15	90	y	0.14	20.5	127	17;24	127	y	0.16	17.5	90	10;25	90	y	0.18	34.0	151	24;44	151	y	ENSMUSG00000033545.15	Znrf1	chr8	protein_coding	zinc and ring finger 1
known_NIR_18318	chr8	112265098	112335925	+	112264196	112335925	A5SS	ENSMUST00000172856.8	known	0.02	2	110	2	110	y	0.00	0	115	0	115	n	0.01	2	202	2	202	y	0.00	0	86	0	86	n	0.02	4	183	4	183	y	0.00	0	117	0	117	n	0.00	0	152	0	152	n	0.02	3	144	3	144	y	0.00	0	90	0	90	n	0.05	6	127	6	127	y	0.00	0	90	0	90	n	0.01	2	151	2	151	y	ENSMUSG00000033545.15	Znrf1	chr8	protein_coding	zinc and ring finger 1
known_NIR_18319	chr8	112265098	112335925	+	112333480	112335925	A5SS&ES	ENSMUST00000174376.8	known	0.07	2	28	2	28	y	0.00	0	27	0	27	n	0.08	2	23	2	23	y	0.00	0	16	0	16	n	0.11	4	31	4	31	y	0.00	0	14	0	14	n	0.00	0	21	0	21	n	0.25	3	9	3	9	y	0.00	0	15	0	15	n	0.20	6	24	6	24	y	0.00	0	25	0	25	n	0.04	2	44	2	44	y	ENSMUSG00000033545.15	Znrf1	chr8	protein_coding	zinc and ring finger 1
known_NIR_18320	chr8	112267956	112335925	+	112264196	112335925	A5SS	ENSMUST00000172856.8	known	0.01	1	110	1	110	n	0.02	2	115	2	115	y	0.00	0	202	0	202	n	0.00	0	86	0	86	n	0.02	3	183	3	183	y	0.01	1	117	1	117	n	0.01	2	152	2	152	y	0.01	1	144	1	144	n	0.00	0	90	0	90	n	0.00	0	127	0	127	n	0.03	3	90	3	90	y	0.01	1	151	1	151	n	ENSMUSG00000033545.15	Znrf1	chr8	protein_coding	zinc and ring finger 1
known_NIR_18321	chr8	112267956	112335925	+	112333480	112335925	A5SS&ES	ENSMUST00000174376.8	known	0.03	1	28	1	28	n	0.07	2	27	2	27	y	0.00	0	23	0	23	n	0.00	0	16	0	16	n	0.09	3	31	3	31	y	0.07	1	14	1	14	n	0.09	2	21	2	21	y	0.10	1	9	1	9	n	0.00	0	15	0	15	n	0.00	0	24	0	24	n	0.11	3	25	3	25	y	0.02	1	44	1	44	n	ENSMUSG00000033545.15	Znrf1	chr8	protein_coding	zinc and ring finger 1
known_NIR_18322	chr8	112345861	112348228	+	112345943	112348228	A5SS	ENSMUST00000172856.8	known	0.00	0	215	0	215	n	0.00	0	207	0	207	n	0.00	0	372	0	372	n	0.00	0	167	0	167	n	0.01	2	335	2	335	y	0.00	0	238	0	238	n	0.00	0	243	0	243	n	0.00	0	193	0	193	n	0.00	0	178	0	178	n	0.00	0	228	0	228	n	0.00	0	151	0	151	n	0.00	0	255	0	255	n	ENSMUSG00000033545.15	Znrf1	chr8	protein_coding	zinc and ring finger 1
known_NIR_18323	chr8	112348319	112349107	+	112348319	112349431	A3SS	ENSMUST00000172856.8	known	0.41	50	72	50	72	y	0.49	73	75	73	75	y	0.59	121	84	121	84	y	0.49	49	51	49	51	y	0.43	87	117	87	117	y	0.41	56	82	56	82	y	0.43	60	79	60	79	y	0.48	55	59	55	59	y	0.44	53	67	53	67	y	0.48	54	58	54	58	y	0.47	45	51	45	51	y	0.47	75	83	75	83	y	ENSMUSG00000033545.15	Znrf1	chr8	protein_coding	zinc and ring finger 1
known_NIR_18324	chr8	112385073	112392710	+	112385073	112392693	A3SS	ENSMUST00000212072.2	known	0.92	11	1	11	1	n	1.00	7	0	7	0	n	0.64	7	4	7	4	y	1.00	7	0	7	0	n	0.75	3	1	3	1	n	0.86	6	1	6	1	n	1.00	9	0	9	0	n	0.80	4	1	4	1	n	1.00	5	0	5	0	n	0.75	3	1	3	1	n	1.00	10	0	10	0	n	0.94	17	1	17	1	n	ENSMUSG00000055835.11	Zfp1	chr8	protein_coding	zinc finger protein 1
known_NIR_18325	chr8	112385073	112392752	+	112385073	112392710	A3SS	ENSMUST00000212206.2	known	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.12	1	7	1	7	n	0.12	1	7	1	7	n	0.50	3	3	3	3	n	0.14	1	6	1	6	n	0.18	2	9	2	9	y	0.20	1	4	1	4	n	0.50	5	5	5	5	y	0.00	0	3	0	3	n	0.09	1	10	1	10	n	0.00	0	17	0	17	n	ENSMUSG00000055835.11	Zfp1	chr8	protein_coding	zinc finger protein 1
known_NIR_18326	chr8	112392836;112394470	112394364;112396123	+	112392836	112396123	cassetteExon	ENSMUST00000212072.2	known	0.06	1.0	16	2;0	16	n	0.00	0.0	15	0;0	15	n	0.23	3.0	10	4;2	10	y	0.05	0.5	10	0;1	10	n	0.06	1.5	24	3;0	24	n	0.00	0.0	10	0;0	10	n	0.05	1.5	26	2;1	26	n	0.08	1.0	12	1;1	12	n	0.00	0.0	19	0;0	19	n	0.11	1.5	12	2;1	12	n	0.11	1.0	8	2;0	8	n	0.00	0.0	11	0;0	11	n	ENSMUSG00000055835.11	Zfp1	chr8	protein_coding	zinc finger protein 1
known_NIR_18327	chr8	112447963	112458671	-	112447963	112470321	A5SS	ENSMUST00000166232.4	known	0.14	3	18	3	18	y	0.32	6	13	6	13	y	0.50	13	13	13	13	y	0.24	6	19	6	19	y	0.22	10	36	10	36	y	0.40	4	6	4	6	y	0.29	6	15	6	15	y	0.30	6	14	6	14	y	0.04	1	22	1	22	n	0.45	20	24	20	24	y	0.28	8	21	8	21	y	0.22	8	29	8	29	y	ENSMUSG00000031955.11	Bcar1	chr8	protein_coding	breast cancer anti-estrogen resistance 1
known_NIR_18328	chr8	112730072	112737842	-	112730072;112732420	112732264;112737842	ES	ENSMUST00000034426.14	known	0.02	2	80.5	2	93;68	y	0.00	0	63.0	0	64;62	n	0.01	1	135.0	1	142;128	n	0.00	0	79.0	0	84;74	n	0.00	0	97.0	0	91;103	n	0.00	0	61.5	0	71;52	n	0.00	0	88.0	0	87;89	n	0.00	0	74.5	0	71;78	n	0.00	0	68.5	0	84;53	n	0.01	1	103.0	1	95;111	n	0.00	0	92.5	0	91;94	n	0.00	0	93.5	0	98;89	n	ENSMUSG00000031948.15	Kars	chr8	protein_coding	lysyl-tRNA synthetase
known_NIR_18329	chr8	112732420	112737842	-	112732420;112735018	112734839;112737842	ES	ENSMUST00000093120.13	known	0.81	68	15.5	68	17;14	y	0.79	62	16.5	62	22;11	y	0.80	128	32.0	128	36;28	y	0.71	74	29.5	74	31;28	y	0.83	103	20.5	103	25;16	y	0.76	52	16.5	52	18;15	y	0.80	89	22.5	89	23;22	y	0.83	78	16.5	78	17;16	y	0.75	53	17.5	53	25;10	y	0.79	111	29.0	111	32;26	y	0.82	94	21.0	94	23;19	y	0.77	89	26.0	89	28;24	y	ENSMUSG00000031948.15	Kars	chr8	protein_coding	lysyl-tRNA synthetase
known_NIR_18330	chr8	112732420;112735171	112734839;112737842	-	112732420	112737842	cassetteExon	ENSMUST00000034426.14	known	0.12	9.0	68	17;1	68	n	0.15	11.0	62	22;0	62	n	0.15	23.0	128	36;10	128	y	0.18	16.5	74	31;2	74	y	0.15	17.5	103	25;10	103	y	0.15	9.0	52	18;0	52	n	0.13	13.0	89	23;3	89	y	0.12	11.0	78	17;5	78	y	0.20	13.5	53	25;2	53	y	0.16	21.5	111	32;11	111	y	0.13	13.5	94	23;4	94	y	0.15	16.0	89	28;4	89	y	ENSMUSG00000031948.15	Kars	chr8	protein_coding	lysyl-tRNA synthetase
known_NIR_18331	chr8	112735018	112737842	-	112730072	112737842	A3SS	ENSMUST00000211978.2	known	0.88	14	2	14	2	y	1.00	11	0	11	0	n	0.97	28	1	28	1	n	1.00	28	0	28	0	n	1.00	16	0	16	0	n	1.00	15	0	15	0	n	1.00	22	0	22	0	n	1.00	16	0	16	0	n	1.00	10	0	10	0	n	0.96	26	1	26	1	n	1.00	19	0	19	0	n	1.00	24	0	24	0	n	ENSMUSG00000031948.15	Kars	chr8	protein_coding	lysyl-tRNA synthetase
known_NIR_18332	chr8	112735018;112735171	112735114;112737842	-	112735018	112737842	cassetteExon	ENSMUST00000093120.13	known	0.10	1.5	14	2;1	14	n	0.12	1.5	11	3;0	11	n	0.23	8.5	28	7;10	28	y	0.11	3.5	28	5;2	28	y	0.36	9.0	16	8;10	16	y	0.03	0.5	15	1;0	15	n	0.17	4.5	22	6;3	22	y	0.26	5.5	16	6;5	16	y	0.29	4.0	10	6;2	10	y	0.28	10.0	26	9;11	26	y	0.14	3.0	19	2;4	19	y	0.16	4.5	24	5;4	24	y	ENSMUSG00000031948.15	Kars	chr8	protein_coding	lysyl-tRNA synthetase
known_NIR_18333	chr8	112735171;112736912	112736854;112737842	-	112735171	112737842	cassetteExon	ENSMUST00000164470.3	known	0.50	1.0	1	1;1	1	n	1.00	1.5	0	1;2	0	n	0.17	2.0	10	1;3	10	n	0.67	4.0	2	3;5	2	y	0.26	3.5	10	1;6	10	n	1.00	1.5	0	1;2	0	n	0.14	0.5	3	1;0	3	n	0.17	1.0	5	1;1	5	n	0.76	6.5	2	4;9	2	y	0.12	1.5	11	1;2	11	n	0.11	0.5	4	0;1	4	n	0.20	1.0	4	1;1	4	n	ENSMUSG00000031948.15	Kars	chr8	protein_coding	lysyl-tRNA synthetase
known_NIR_18334	chr8	112736912	112737842	-	112732420	112737842	A3SS	ENSMUST00000034426.14	known	0.01	1	68	1	68	n	0.03	2	62	2	62	y	0.02	3	128	3	128	y	0.06	5	74	5	74	y	0.06	6	103	6	103	y	0.04	2	52	2	52	y	0.00	0	89	0	89	n	0.01	1	78	1	78	n	0.15	9	53	9	53	y	0.02	2	111	2	111	y	0.01	1	94	1	94	n	0.01	1	89	1	89	n	ENSMUSG00000031948.15	Kars	chr8	protein_coding	lysyl-tRNA synthetase
known_NIR_18335	chr8	112736912	112737842	-	112735018	112737842	A3SS	ENSMUST00000093120.13	known	0.07	1	14	1	14	n	0.15	2	11	2	11	y	0.10	3	28	3	28	y	0.15	5	28	5	28	y	0.27	6	16	6	16	y	0.12	2	15	2	15	y	0.00	0	22	0	22	n	0.06	1	16	1	16	n	0.47	9	10	9	10	y	0.07	2	26	2	26	y	0.05	1	19	1	19	n	0.04	1	24	1	24	n	ENSMUSG00000031948.15	Kars	chr8	protein_coding	lysyl-tRNA synthetase
known_NIR_18336	chr8	11317656	11329621	-	11317656	11362516	A5SS	ENSMUST00000033898.10	known	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.00	0	42	0	42	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.04	1	23	1	23	n	0.00	0	20	0	20	n	0.27	3	8	3	8	y	0.00	0	2	0	2	n	0.29	2	5	2	5	n	0.00	0	9	0	9	n	0.22	2	7	2	7	n	ENSMUSG00000031502.12	Col4a1	chr8	protein_coding	collagen, type IV, alpha 1
known_NIR_18337	chr8	114860440	114874635	+	114860440;114863231	114863078;114874635	ES	ENSMUST00000073521.12	known	0.02	39	1573.5	39	1435;1712	y	0.02	28	1203.0	28	1078;1328	y	0.01	18	1360.0	18	1189;1531	y	0.02	42	2186.0	42	2006;2366	y	0.02	21	1135.0	21	1045;1225	y	0.01	3	252.5	3	225;280	y	0.02	33	1303.0	33	1109;1497	y	0.00	1	233.5	1	235;232	n	0.02	61	3126.0	61	2920;3332	y	0.02	68	3113.5	68	2887;3340	y	0.03	75	2826.0	75	2517;3135	y	0.01	32	2616.5	32	2334;2899	y	ENSMUSG00000031767.14	Nudt7	chr8	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 7
known_NIR_18338	chr8	114860440	114874635	+	114863231	114874635	A5SS&ES	ENSMUST00000109109.8	known	0.02	39	1712	39	1712	y	0.02	28	1328	28	1328	y	0.01	18	1531	18	1531	y	0.02	42	2366	42	2366	y	0.02	21	1225	21	1225	y	0.01	3	280	3	280	y	0.02	33	1497	33	1497	y	0.00	1	232	1	232	n	0.02	61	3332	61	3332	y	0.02	68	3340	68	3340	y	0.02	75	3135	75	3135	y	0.01	32	2899	32	2899	y	ENSMUSG00000031767.14	Nudt7	chr8	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 7
known_NIR_18339	chr8	114862180	114863078	+	114860440	114863078	A5SS	ENSMUST00000073521.12	known	0.08	131	1435	131	1435	y	0.08	100	1078	100	1078	y	0.10	132	1189	132	1189	y	0.08	174	2006	174	2006	y	0.08	92	1045	92	1045	y	0.07	17	225	17	225	y	0.08	90	1109	90	1109	y	0.09	23	235	23	235	y	0.09	279	2920	279	2920	y	0.09	293	2887	293	2887	y	0.09	261	2517	261	2517	y	0.08	202	2334	202	2334	y	ENSMUSG00000031767.14	Nudt7	chr8	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 7
known_NIR_18340	chr8	114874733	114878394	+	114874793	114878394	A5SS	ENSMUST00000073521.12	known	0.05	80	1630	80	1630	y	0.03	49	1377	49	1377	y	0.04	64	1385	64	1385	y	0.03	65	2002	65	2002	y	0.04	58	1304	58	1304	y	0.05	15	284	15	284	y	0.05	76	1433	76	1433	y	0.04	10	221	10	221	y	0.04	135	3101	135	3101	y	0.05	166	3199	166	3199	y	0.04	133	3164	133	3164	y	0.04	110	2749	110	2749	y	ENSMUSG00000031767.14	Nudt7	chr8	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 7
known_NIR_18341	chr8	115175078	115177257	+	115175078	115215638	A3SS	ENSMUST00000004756.14	known	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.20	2	8	2	8	y	0.08	1	12	1	12	n	0.10	2	18	2	18	y	0.00	0	8	0	8	n	0.09	1	10	1	10	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.12	2	14	2	14	y	ENSMUSG00000004637.16	Wwox	chr8	protein_coding	WW domain-containing oxidoreductase
known_NIR_18342	chr8	115438991	115444838	+	115438991	116078377	A3SS	ENSMUST00000004756.14	known	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.33	1	2	1	2	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.23	3	10	3	10	y	0.12	1	7	1	7	n	0.27	3	8	3	8	y	0.00	0	16	0	16	n	0.00	0	10	0	10	n	0.22	2	7	2	7	n	ENSMUSG00000004637.16	Wwox	chr8	protein_coding	WW domain-containing oxidoreductase
known_NIR_18343	chr8	115438991	115601341	+	115438991	116078377	A3SS	ENSMUST00000004756.14	known	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.30	3	7	3	7	y	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.25	2	6	2	6	n	0.09	1	10	1	10	n	0.00	0	7	0	7	n	0.11	1	8	1	8	n	0.06	1	16	1	16	n	0.00	0	10	0	10	n	0.12	1	7	1	7	n	ENSMUSG00000004637.16	Wwox	chr8	protein_coding	WW domain-containing oxidoreductase
known_NIR_18344	chr8	11547740	11552622	+	11547626	11552622	A5SS	ENSMUST00000177955.8	known	0.48	63	68	63	68	y	0.53	63	55	63	55	y	0.58	62	44	62	44	y	0.51	87	85	87	85	y	0.63	102	61	102	61	y	0.74	65	23	65	23	y	0.57	97	73	97	73	y	0.73	46	17	46	17	y	0.57	67	51	67	51	y	0.54	78	66	78	66	y	0.51	58	56	58	56	y	0.58	79	58	79	58	y	ENSMUSG00000031505.12	Naxd	chr8	protein_coding	NAD(P)HX dehydratase
known_NIR_18345	chr8	11554930	11556707	+	11554930;11555519	11555431;11556707	ES	ENSMUST00000177955.8	known	0.01	1	169.0	1	188;150	n	0.01	1	147.0	1	153;141	n	0.00	0	138.5	0	150;127	n	0.00	0	150.5	0	173;128	n	0.01	2	198.5	2	205;192	y	0.00	0	90.5	0	87;94	n	0.01	2	212.5	2	232;193	y	0.02	2	101.5	2	114;89	y	0.01	1	138.0	1	159;117	n	0.01	3	204.5	3	219;190	y	0.02	4	197.0	4	199;195	y	0.00	0	183.5	0	205;162	n	ENSMUSG00000031505.12	Naxd	chr8	protein_coding	NAD(P)HX dehydratase
known_NIR_18346	chr8	11560347	11562895	+	11560347;11561997	11561877;11562895	ES	ENSMUST00000177955.8	known	0.02	4	183.0	4	186;180	y	0.02	5	234.0	5	224;244	y	0.03	4	143.5	4	142;145	y	0.01	1	167.5	1	155;180	n	0.01	3	238.0	3	226;250	y	0.00	0	100.5	0	117;84	n	0.02	6	239.5	6	246;233	y	0.00	0	108.0	0	108;108	n	0.03	6	178.5	6	180;177	y	0.04	10	261.5	10	265;258	y	0.02	5	224.0	5	223;225	y	0.02	4	203.0	4	173;233	y	ENSMUSG00000031505.12	Naxd	chr8	protein_coding	NAD(P)HX dehydratase
known_NIR_18347	chr8	11564186	11564493	-	11564191	11564493	A3SS	ENSMUST00000049461.7	known	0.06	3	45	3	45	y	0.00	0	49	0	49	n	0.00	0	53	0	53	n	0.00	0	46	0	46	n	0.00	0	41	0	41	n	0.00	0	66	0	66	n	0.00	0	59	0	59	n	0.00	0	47	0	47	n	0.00	0	51	0	51	n	0.00	0	55	0	55	n	0.00	0	57	0	57	n	0.00	0	37	0	37	n	ENSMUSG00000056228.11	Cars2	chr8	protein_coding	cysteinyl-tRNA synthetase 2 (mitochondrial)(putative)
known_NIR_18348	chr8	11572208	11576002	-	11568990	11576002	A3SS	ENSMUST00000049461.7	known	0.15	3	17	3	17	y	0.07	2	27	2	27	y	0.06	4	65	4	65	y	0.11	4	34	4	34	y	0.25	9	27	9	27	y	0.14	6	38	6	38	y	0.13	4	27	4	27	y	0.11	2	17	2	17	y	0.15	3	17	3	17	y	0.07	3	42	3	42	y	0.06	2	29	2	29	y	0.08	5	54	5	54	y	ENSMUSG00000056228.11	Cars2	chr8	protein_coding	cysteinyl-tRNA synthetase 2 (mitochondrial)(putative)
known_NIR_18349	chr8	11572208	11576002	-	11572218	11576002	A3SS	ENSMUST00000209218.2	known	0.60	3	2	3	2	n	0.33	2	4	2	4	n	0.25	4	12	4	12	y	0.50	4	4	4	4	n	0.56	9	7	9	7	y	0.50	6	6	6	6	y	0.33	4	8	4	8	y	0.20	2	8	2	8	y	0.38	3	5	3	5	n	0.50	3	3	3	3	n	0.50	2	2	2	2	n	0.71	5	2	5	2	n	ENSMUSG00000056228.11	Cars2	chr8	protein_coding	cysteinyl-tRNA synthetase 2 (mitochondrial)(putative)
known_NIR_18350	chr8	11572218	11576002	-	11568990	11576002	A3SS	ENSMUST00000049461.7	known	0.11	2	17	2	17	y	0.13	4	27	4	27	y	0.16	12	65	12	65	y	0.11	4	34	4	34	y	0.21	7	27	7	27	y	0.14	6	38	6	38	y	0.23	8	27	8	27	y	0.32	8	17	8	17	y	0.23	5	17	5	17	y	0.07	3	42	3	42	y	0.06	2	29	2	29	y	0.04	2	54	2	54	y	ENSMUSG00000056228.11	Cars2	chr8	protein_coding	cysteinyl-tRNA synthetase 2 (mitochondrial)(putative)
known_NIR_18351	chr8	11579885	11580295	-	11579713	11580295	A3SS	ENSMUST00000049461.7	known	0.03	1	38	1	38	n	0.02	1	41	1	41	n	0.07	5	67	5	67	y	0.08	3	35	3	35	y	0.02	1	52	1	52	n	0.11	5	42	5	42	y	0.09	4	43	4	43	y	0.06	2	34	2	34	y	0.00	0	23	0	23	n	0.00	0	55	0	55	n	0.03	1	39	1	39	n	0.03	1	38	1	38	n	ENSMUSG00000056228.11	Cars2	chr8	protein_coding	cysteinyl-tRNA synthetase 2 (mitochondrial)(putative)
known_NIR_18352	chr8	11580424	11587272	-	11580427	11587272	A3SS	ENSMUST00000049461.7	known	0.65	24	13	24	13	y	0.71	25	10	25	10	y	0.69	22	10	22	10	y	0.80	35	9	35	9	y	0.80	39	10	39	10	y	0.82	33	7	33	7	y	0.83	25	5	25	5	y	0.60	18	12	18	12	y	0.88	29	4	29	4	y	0.71	25	10	25	10	y	0.67	30	15	30	15	y	0.68	23	11	23	11	y	ENSMUSG00000056228.11	Cars2	chr8	protein_coding	cysteinyl-tRNA synthetase 2 (mitochondrial)(putative)
known_NIR_18353	chr8	11580424	11587272	-	11580618	11587272	A3SS	ENSMUST00000210478.2	known	0.96	24	1	24	1	n	1.00	25	0	25	0	n	1.00	22	0	22	0	n	0.95	35	2	35	2	y	1.00	39	0	39	0	n	1.00	33	0	33	0	n	1.00	25	0	25	0	n	0.90	18	2	18	2	y	1.00	29	0	29	0	n	1.00	25	0	25	0	n	1.00	30	0	30	0	n	0.96	23	1	23	1	n	ENSMUSG00000056228.11	Cars2	chr8	protein_coding	cysteinyl-tRNA synthetase 2 (mitochondrial)(putative)
known_NIR_18354	chr8	11580618	11587272	-	11580427	11587272	A3SS	ENSMUST00000049461.7	known	0.07	1	13	1	13	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.18	2	9	2	9	y	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.14	2	12	2	12	y	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.08	1	11	1	11	n	ENSMUSG00000056228.11	Cars2	chr8	protein_coding	cysteinyl-tRNA synthetase 2 (mitochondrial)(putative)
known_NIR_18355	chr8	11587351	11591898	-	11587355	11591898	A3SS	ENSMUST00000049461.7	known	0.00	0	33	0	33	n	0.00	0	31	0	31	n	0.04	2	48	2	48	y	0.00	0	32	0	32	n	0.00	0	47	0	47	n	0.03	1	36	1	36	n	0.00	0	54	0	54	n	0.00	0	26	0	26	n	0.00	0	34	0	34	n	0.00	0	33	0	33	n	0.00	0	35	0	35	n	0.00	0	40	0	40	n	ENSMUSG00000056228.11	Cars2	chr8	protein_coding	cysteinyl-tRNA synthetase 2 (mitochondrial)(putative)
known_NIR_18356	chr8	11592590;11592977	11592902;11597727	-	11592590	11597727	cassetteExon	ENSMUST00000049461.7	known	0.00	0.0	23	0;0	23	n	0.15	3.5	20	4;3	20	y	0.07	3.5	50	4;3	50	y	0.03	1.0	36	0;2	36	n	0.03	1.5	44	3;0	44	n	0.10	2.0	19	2;2	19	y	0.06	3.0	44	3;3	44	y	0.09	2.0	20	1;3	20	n	0.08	3.0	33	4;2	33	y	0.03	1.0	38	0;2	38	n	0.10	2.5	23	3;2	23	y	0.06	2.0	32	2;2	32	y	ENSMUSG00000056228.11	Cars2	chr8	protein_coding	cysteinyl-tRNA synthetase 2 (mitochondrial)(putative)
known_NIR_18357	chr8	11597087	11597727	-	11592590	11597727	A3SS	ENSMUST00000049461.7	known	0.08	2	23	2	23	y	0.05	1	20	1	20	n	0.02	1	50	1	50	n	0.10	4	36	4	36	y	0.12	6	44	6	44	y	0.05	1	19	1	19	n	0.10	5	44	5	44	y	0.09	2	20	2	20	y	0.08	3	33	3	33	y	0.12	5	38	5	38	y	0.21	6	23	6	23	y	0.06	2	32	2	32	y	ENSMUSG00000056228.11	Cars2	chr8	protein_coding	cysteinyl-tRNA synthetase 2 (mitochondrial)(putative)
known_NIR_18358	chr8	11606200	11611418	+	11607045	11611418	A5SS	ENSMUST00000054399.6	known	0.09	1	10	1	10	n	0.00	0	21	0	21	n	0.06	2	30	2	30	y	0.03	1	33	1	33	n	0.00	0	32	0	32	n	0.00	0	18	0	18	n	0.00	0	35	0	35	n	0.00	0	11	0	11	n	0.05	1	20	1	20	n	0.00	0	38	0	38	n	0.00	0	22	0	22	n	0.00	0	30	0	30	n	ENSMUSG00000045969.9	Ing1	chr8	protein_coding	inhibitor of growth family, member 1
known_NIR_18359	chr8	11607045	11611418	+	11606095	11611418	A5SS	ENSMUST00000210740.2	known	1.00	10	0	10	0	n	1.00	21	0	21	0	n	1.00	30	0	30	0	n	1.00	33	0	33	0	n	0.94	32	2	32	2	y	1.00	18	0	18	0	n	0.97	35	1	35	1	n	1.00	11	0	11	0	n	0.91	20	2	20	2	y	1.00	38	0	38	0	n	1.00	22	0	22	0	n	1.00	30	0	30	0	n	ENSMUSG00000045969.9	Ing1	chr8	protein_coding	inhibitor of growth family, member 1
known_NIR_18360	chr8	11608566	11611418	+	11606095	11611418	A5SS	ENSMUST00000210740.2	known	1.00	8	0	8	0	n	1.00	12	0	12	0	n	1.00	28	0	28	0	n	1.00	15	0	15	0	n	0.92	22	2	22	2	y	1.00	7	0	7	0	n	0.93	14	1	14	1	n	1.00	8	0	8	0	n	0.82	9	2	9	2	y	1.00	18	0	18	0	n	1.00	4	0	4	0	n	1.00	4	0	4	0	n	ENSMUSG00000045969.9	Ing1	chr8	protein_coding	inhibitor of growth family, member 1
known_NIR_18361	chr8	11608566	11611418	+	11606200	11611418	A5SS	ENSMUST00000209646.2	known	0.89	8	1	8	1	n	1.00	12	0	12	0	n	0.93	28	2	28	2	y	0.94	15	1	15	1	n	1.00	22	0	22	0	n	1.00	7	0	7	0	n	1.00	14	0	14	0	n	1.00	8	0	8	0	n	0.90	9	1	9	1	n	1.00	18	0	18	0	n	1.00	4	0	4	0	n	1.00	4	0	4	0	n	ENSMUSG00000045969.9	Ing1	chr8	protein_coding	inhibitor of growth family, member 1
known_NIR_18362	chr8	11608566	11611418	+	11607045	11611418	A5SS	ENSMUST00000210670.2	known	0.44	8	10	8	10	y	0.36	12	21	12	21	y	0.48	28	30	28	30	y	0.31	15	33	15	33	y	0.41	22	32	22	32	y	0.28	7	18	7	18	y	0.29	14	35	14	35	y	0.42	8	11	8	11	y	0.31	9	20	9	20	y	0.32	18	38	18	38	y	0.15	4	22	4	22	y	0.12	4	30	4	30	y	ENSMUSG00000045969.9	Ing1	chr8	protein_coding	inhibitor of growth family, member 1
known_NIR_18363	chr8	11669297	11670262	-	11669297	11673697	A5SS	ENSMUST00000211690.2	known	0.50	6	6	6	6	y	0.57	4	3	4	3	n	0.19	3	13	3	13	y	0.25	2	6	2	6	n	0.43	9	12	9	12	y	0.43	3	4	3	4	n	0.50	13	13	13	13	y	0.57	8	6	8	6	y	0.57	4	3	4	3	n	0.28	5	13	5	13	y	0.53	8	7	8	7	y	0.44	4	5	4	5	n	ENSMUSG00000031508.15	Ankrd10	chr8	protein_coding	ankyrin repeat domain 10
known_NIR_18364	chr8	11669297	11678439	-	11669297	11673697	5pMXE	ENSMUST00000211690.2	known	0.33	3	6	3	6	n	0.00	0	3	0	3	n	0.19	3	13	3	13	y	0.25	2	6	2	6	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.41	9	13	9	13	y	0.00	0	6	0	6	n	0.25	1	3	1	3	n	0.19	3	13	3	13	y	0.12	1	7	1	7	n	0.17	1	5	1	5	n	ENSMUSG00000031508.15	Ankrd10	chr8	protein_coding	ankyrin repeat domain 10
known_NIR_18365	chr8	11669297	11678439	-	11669297;11670373	11670262;11678439	ES	ENSMUST00000210530.2	known	0.43	3	4.0	3	6;2	y	0.00	0	2.0	0	4;0	n	0.50	3	3.0	3	3;3	n	0.67	2	1.0	2	2;0	n	0.00	0	4.5	0	9;0	n	0.00	0	1.5	0	3;0	n	0.49	9	9.5	9	13;6	y	0.00	0	5.5	0	8;3	n	0.22	1	3.5	1	4;3	n	0.46	3	3.5	3	5;2	y	0.15	1	5.5	1	8;3	n	0.33	1	2.0	1	4;0	n	ENSMUSG00000031508.15	Ankrd10	chr8	protein_coding	ankyrin repeat domain 10
known_NIR_18366	chr8	11669297;11673858	11673697;11678439	-	11669297	11678439	cassetteExon	ENSMUST00000169782.3	known	0.50	3.0	3	6;0	3	n	1.00	1.5	0	3;0	0	n	0.73	8.0	3	13;3	3	y	0.60	3.0	2	6;0	2	n	1.00	6.0	0	12;0	0	n	1.00	3.0	0	4;2	0	n	0.42	6.5	9	13;0	9	n	1.00	3.0	0	6;0	0	n	0.75	3.0	1	3;3	1	n	0.68	6.5	3	13;0	3	n	0.78	3.5	1	7;0	1	n	0.78	3.5	1	5;2	1	n	ENSMUSG00000031508.15	Ankrd10	chr8	protein_coding	ankyrin repeat domain 10
known_NIR_18367	chr8	11669297;11673858	11673697;11678439	-	11669297;11670373	11670262;11678439	MXE	ENSMUST00000210530.2	known	0.43	3.0	4.0	6;0	6;2	n	0.43	1.5	2.0	3;0	4;0	n	0.73	8.0	3.0	13;3	3;3	y	0.75	3.0	1.0	6;0	2;0	n	0.57	6.0	4.5	12;0	9;0	n	0.67	3.0	1.5	4;2	3;0	n	0.41	6.5	9.5	13;0	13;6	n	0.35	3.0	5.5	6;0	8;3	n	0.46	3.0	3.5	3;3	4;3	y	0.65	6.5	3.5	13;0	5;2	n	0.39	3.5	5.5	7;0	8;3	n	0.64	3.5	2.0	5;2	4;0	n	ENSMUSG00000031508.15	Ankrd10	chr8	protein_coding	ankyrin repeat domain 10
known_NIR_18368	chr8	11683018	11683653	-	11683018	11685411	A5SS	ENSMUST00000210530.2	known	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.12	2	14	2	14	y	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.20	2	8	2	8	y	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	ENSMUSG00000031508.15	Ankrd10	chr8	protein_coding	ankyrin repeat domain 10
known_NIR_18369	chr8	11683018	11684811	-	11683018	11685411	A5SS	ENSMUST00000210530.2	known	0.00	0	2	0	2	n	0.14	1	6	1	6	n	0.18	3	14	3	14	y	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.27	3	8	3	8	y	0.24	5	16	5	16	y	0.20	2	8	2	8	y	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	ENSMUSG00000031508.15	Ankrd10	chr8	protein_coding	ankyrin repeat domain 10
known_NIR_18370	chr8	117616598	117637823	-	117616598	117620827	5pMXE	ENSMUST00000155260.2	known	0.03	2	70	2	70	y	0.00	0	81	0	81	n	0.00	0	40	0	40	n	0.01	1	75	1	75	n	0.00	0	111	0	111	n	0.00	0	32	0	32	n	0.00	0	83	0	83	n	0.04	1	23	1	23	n	0.00	0	49	0	49	n	0.01	1	104	1	104	n	0.00	0	101	0	101	n	0.00	0	94	0	94	n	ENSMUSG00000014633.16	Cmc2	chr8	protein_coding	COX assembly mitochondrial protein 2
known_NIR_18371	chr8	117616598	117637867	-	117616598	117620827	5pMXE	ENSMUST00000155260.2	known	0.09	7	70	7	70	y	0.12	11	81	11	81	y	0.18	9	40	9	40	y	0.07	6	75	6	75	y	0.07	8	111	8	111	y	0.18	7	32	7	32	y	0.08	7	83	7	83	y	0.23	7	23	7	23	y	0.06	3	49	3	49	y	0.06	7	104	7	104	y	0.03	3	101	3	101	y	0.07	7	94	7	94	y	ENSMUSG00000014633.16	Cmc2	chr8	protein_coding	COX assembly mitochondrial protein 2
known_NIR_18372	chr8	117616598	117637867	-	117616598;117620898	117620827;117637867	ES	ENSMUST00000148235.8	known	0.08	7	75.5	7	70;81	y	0.12	11	82.0	11	81;83	y	0.19	9	38.0	9	40;36	y	0.07	6	80.0	6	75;85	y	0.07	8	108.5	8	111;106	y	0.15	7	39.0	7	32;46	y	0.07	7	88.0	7	83;93	y	0.21	7	26.5	7	23;30	y	0.05	3	62.0	3	49;75	y	0.06	7	106.0	7	104;108	y	0.03	3	94.5	3	101;88	y	0.06	7	102.0	7	94;110	y	ENSMUSG00000014633.16	Cmc2	chr8	protein_coding	COX assembly mitochondrial protein 2
known_NIR_18373	chr8	117616598;117620898	117620827;117648090	-	117616598;117637973	117637867;117648090	MXE	ENSMUST00000078589.7	known	0.48	36.0	38.5	70;2	7;70	y	0.53	42.5	37.5	81;4	11;64	y	0.41	21.0	30.0	40;2	9;51	y	0.51	37.5	36.5	75;0	6;67	n	0.49	55.5	57.0	111;0	8;106	n	0.40	17.0	25.5	32;2	7;44	y	0.49	42.5	43.5	83;2	7;80	y	0.31	11.5	26.0	23;0	7;45	n	0.45	25.5	31.5	49;2	3;60	y	0.53	53.5	47.0	104;3	7;87	y	0.57	50.5	38.0	101;0	3;73	n	0.50	47.0	47.0	94;0	7;87	n	ENSMUSG00000014633.16	Cmc2	chr8	protein_coding	COX assembly mitochondrial protein 2
known_NIR_18374	chr8	117616598;117637973	117637823;117648090	-	117616598;117620898	117620827;117648090	MXE	ENSMUST00000134356.2	known	0.50	36.0	36.0	2;70	70;2	y	0.43	32.0	42.5	0;64	81;4	n	0.55	25.5	21.0	0;51	40;2	n	0.48	34.0	37.5	1;67	75;0	n	0.49	53.0	55.5	0;106	111;0	n	0.56	22.0	17.0	0;44	32;2	n	0.48	40.0	42.5	0;80	83;2	n	0.67	23.0	11.5	1;45	23;0	n	0.54	30.0	25.5	0;60	49;2	n	0.45	44.0	53.5	1;87	104;3	n	0.42	36.5	50.5	0;73	101;0	n	0.48	43.5	47.0	0;87	94;0	n	ENSMUSG00000014633.16	Cmc2	chr8	protein_coding	COX assembly mitochondrial protein 2
known_NIR_18375	chr8	117620898	117637823	-	117620898	117637867	A5SS	ENSMUST00000148235.8	known	0.01	1	81	1	81	n	0.01	1	83	1	83	n	0.08	3	36	3	36	y	0.02	2	85	2	85	y	0.01	1	106	1	106	n	0.10	5	46	5	46	y	0.00	0	93	0	93	n	0.00	0	30	0	30	n	0.03	2	75	2	75	y	0.04	4	108	4	108	y	0.03	3	88	3	88	y	0.02	2	110	2	110	y	ENSMUSG00000014633.16	Cmc2	chr8	protein_coding	COX assembly mitochondrial protein 2
known_NIR_18376	chr8	117620898	117648090	-	117620898;117637973	117637823;117648090	ES	ENSMUST00000131616.8	known	0.05	2	35.5	2	1;70	n	0.11	4	32.5	4	1;64	n	0.07	2	27.0	2	3;51	y	0.00	0	34.5	0	2;67	n	0.00	0	53.5	0	1;106	n	0.08	2	24.5	2	5;44	y	0.05	2	40.0	2	0;80	n	0.00	0	22.5	0	0;45	n	0.06	2	31.0	2	2;60	y	0.06	3	45.5	3	4;87	y	0.00	0	38.0	0	3;73	n	0.00	0	44.5	0	2;87	n	ENSMUSG00000014633.16	Cmc2	chr8	protein_coding	COX assembly mitochondrial protein 2
known_NIR_18377	chr8	117620898	117648090	-	117620898;117637973	117637867;117648090	ES	ENSMUST00000148235.8	known	0.03	2	75.5	2	81;70	y	0.05	4	73.5	4	83;64	y	0.04	2	43.5	2	36;51	y	0.00	0	76.0	0	85;67	n	0.00	0	106.0	0	106;106	n	0.04	2	45.0	2	46;44	y	0.02	2	86.5	2	93;80	y	0.00	0	37.5	0	30;45	n	0.03	2	67.5	2	75;60	y	0.03	3	97.5	3	108;87	y	0.00	0	80.5	0	88;73	n	0.00	0	98.5	0	110;87	n	ENSMUSG00000014633.16	Cmc2	chr8	protein_coding	COX assembly mitochondrial protein 2
known_NIR_18378	chr8	117623253	117637867	-	117616598	117637867	A3SS	ENSMUST00000078589.7	known	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.18	2	9	2	9	y	0.00	0	6	0	6	n	0.20	2	8	2	8	y	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.50	3	3	3	3	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	ENSMUSG00000014633.16	Cmc2	chr8	protein_coding	COX assembly mitochondrial protein 2
known_NIR_18379	chr8	118391819	118400339	-	118391819	118397948	5pMXE	ENSMUST00000037955.14	known	0.55	66	54	66	54	y	0.48	43	46	43	46	y	0.61	45	29	45	29	y	0.56	95	75	95	75	y	0.55	109	88	109	88	y	0.63	65	38	65	38	y	0.36	62	109	62	109	y	0.56	62	49	62	49	y	0.45	53	66	53	66	y	0.44	81	103	81	103	y	0.50	70	70	70	70	y	0.49	85	88	85	88	y	ENSMUSG00000034308.14	Sdr42e1	chr8	protein_coding	short chain dehydrogenase/reductase family 42E, member 1
known_NIR_18380	chr8	118391819;118398082	118397948;118400339	-	118391819	118400339	cassetteExon	ENSMUST00000173522.8	known	0.37	39.0	66	54;24	66	y	0.43	32.5	43	46;19	43	y	0.30	19.0	45	29;9	45	y	0.39	60.5	95	75;46	95	y	0.38	66.5	109	88;45	109	y	0.33	31.5	65	38;25	65	y	0.54	72.0	62	109;35	62	y	0.41	43.5	62	49;38	62	y	0.48	49.5	53	66;33	53	y	0.49	76.5	81	103;50	81	y	0.39	45.5	70	70;21	70	y	0.42	62.0	85	88;36	85	y	ENSMUSG00000034308.14	Sdr42e1	chr8	protein_coding	short chain dehydrogenase/reductase family 42E, member 1
known_NIR_18381	chr8	118429002	118434139	+	118429002	118461233	A3SS	ENSMUST00000034304.9	known	0.01	4	495	4	495	y	0.01	5	399	5	399	y	0.00	1	233	1	233	n	0.00	0	584	0	584	n	0.00	0	442	0	442	n	0.00	0	144	0	144	n	0.01	3	454	3	454	y	0.03	4	155	4	155	y	0.01	3	558	3	558	y	0.01	3	542	3	542	y	0.00	3	718	3	718	y	0.01	3	441	3	441	y	ENSMUSG00000031844.9	Hsd17b2	chr8	protein_coding	hydroxysteroid (17-beta) dehydrogenase 2
known_NIR_18382	chr8	11865300	11869638	+	11865300;11867884	11867660;11869638	ES	ENSMUST00000110909.9	known	0.15	3	17.5	3	23;12	y	0.08	2	22.5	2	28;17	y	0.14	4	24.0	4	24;24	y	0.00	0	20.0	0	15;25	n	0.16	6	30.5	6	30;31	y	0.00	0	14.0	0	17;11	n	0.05	1	20.0	1	14;26	n	0.32	6	12.5	6	15;10	y	0.11	2	16.5	2	16;17	y	0.12	3	22.0	3	25;19	y	0.11	2	16.5	2	22;11	y	0.05	1	18.0	1	18;18	n	ENSMUSG00000031511.17	Arhgef7	chr8	protein_coding	Rho guanine nucleotide exchange factor (GEF7)
known_NIR_18383	chr8	120072472;120073606	120073564;120074775	+	120072472	120074775	cassetteExon	ENSMUST00000034300.8	known	0.01	4.0	603	7;1	603	n	0.00	2.0	565	4;0	565	n	0.02	8.5	528	10;7	528	y	0.01	5.5	493	7;4	493	y	0.01	7.0	681	8;6	681	y	0.02	5.0	325	5;5	325	y	0.01	6.0	798	6;6	798	y	0.02	6.5	388	10;3	388	y	0.01	5.0	462	7;3	462	y	0.01	6.0	756	9;3	756	y	0.01	9.5	667	11;8	667	y	0.01	6.5	587	9;4	587	y	ENSMUSG00000031839.8	Hsbp1	chr8	protein_coding	heat shock factor binding protein 1
known_NIR_18384	chr8	120168241	120169655	+	120168241	120169172	A3SS	ENSMUST00000145604.8	known	0.00	0	255	0	255	n	0.00	0	215	0	215	n	0.00	0	359	0	359	n	0.00	1	362	1	362	n	0.00	0	716	0	716	n	0.00	0	144	0	144	n	0.00	1	282	1	282	n	0.01	1	183	1	183	n	0.00	0	552	0	552	n	0.00	1	462	1	462	n	0.00	0	771	0	771	n	0.00	2	689	2	689	y	ENSMUSG00000074063.11	Osgin1	chr8	protein_coding	oxidative stress induced growth inhibitor 1
known_NIR_18385	chr8	120168241	120169655	+	120168241;120169308	120169172;120169655	ES	ENSMUST00000131448.8	known	0.00	0	230.5	0	255;206	n	0.00	0	188.5	0	215;162	n	0.00	0	328.5	0	359;298	n	0.00	1	345.5	1	362;329	n	0.00	0	669.0	0	716;622	n	0.00	0	145.5	0	144;147	n	0.00	1	267.5	1	282;253	n	0.01	1	158.0	1	183;133	n	0.00	0	519.5	0	552;487	n	0.00	1	432.5	1	462;403	n	0.00	0	708.5	0	771;646	n	0.00	2	671.5	2	689;654	y	ENSMUSG00000074063.11	Osgin1	chr8	protein_coding	oxidative stress induced growth inhibitor 1
known_NIR_18386	chr8	120170022	120171698	+	120170022	120171696	A3SS	ENSMUST00000152420.8	known	0.02	4	237	4	237	y	0.05	9	177	9	177	y	0.03	11	320	11	320	y	0.04	14	348	14	348	y	0.04	30	696	30	696	y	0.02	3	178	3	178	y	0.06	17	258	17	258	y	0.04	6	150	6	150	y	0.04	21	524	21	524	y	0.02	8	476	8	476	y	0.03	21	771	21	771	y	0.04	32	751	32	751	y	ENSMUSG00000074063.11	Osgin1	chr8	protein_coding	oxidative stress induced growth inhibitor 1
known_NIR_18387	chr8	120274624	120285129	-	120274624	120276297	A5SS&ES	ENSMUST00000098362.11	known	0.80	4	1	4	1	n	1.00	4	0	4	0	n	0.60	6	4	6	4	y	0.50	3	3	3	3	n	0.62	8	5	8	5	y	0.80	4	1	4	1	n	1.00	8	0	8	0	n	0.30	3	7	3	7	y	0.62	5	3	5	3	n	0.67	6	3	6	3	n	0.60	6	4	6	4	y	0.75	3	1	3	1	n	ENSMUSG00000031835.17	Mbtps1	chr8	protein_coding	membrane-bound transcription factor peptidase, site 1
known_NIR_18388	chr8	120274624	120285129	-	120274624	120285385	A5SS	ENSMUST00000212601.2	known	0.11	4	31	4	31	y	0.13	4	26	4	26	y	0.07	6	84	6	84	y	0.07	3	42	3	42	y	0.08	8	91	8	91	y	0.12	4	29	4	29	y	0.12	8	56	8	56	y	0.07	3	37	3	37	y	0.11	5	41	5	41	y	0.08	6	65	6	65	y	0.19	6	25	6	25	y	0.06	3	46	3	46	y	ENSMUSG00000031835.17	Mbtps1	chr8	protein_coding	membrane-bound transcription factor peptidase, site 1
known_NIR_18389	chr8	120274624;120276445	120276297;120285385	-	120274624	120285385	cassetteExon	ENSMUST00000212601.2	known	0.02	0.5	31	1;0	31	n	0.00	0.0	26	0;0	26	n	0.03	3.0	84	4;2	84	y	0.05	2.0	42	3;1	42	n	0.04	3.5	91	5;2	91	y	0.02	0.5	29	1;0	29	n	0.02	1.0	56	0;2	56	n	0.14	6.0	37	7;5	37	y	0.08	3.5	41	3;4	41	y	0.04	2.5	65	3;2	65	y	0.07	2.0	25	4;0	25	n	0.03	1.5	46	1;2	46	n	ENSMUSG00000031835.17	Mbtps1	chr8	protein_coding	membrane-bound transcription factor peptidase, site 1
known_NIR_18390	chr8	120500179	120504885	-	120500179	120505099	A5SS	ENSMUST00000049156.7	known	0.00	0	7	0	7	n	0.17	2	10	2	10	y	0.33	3	6	3	6	n	0.10	1	9	1	9	n	0.20	4	16	4	16	y	0.36	4	7	4	7	y	0.15	2	11	2	11	y	0.64	7	4	7	4	y	0.00	0	12	0	12	n	0.56	5	4	5	4	n	0.25	1	3	1	3	n	0.11	2	17	2	17	y	ENSMUSG00000034105.10	Meak7	chr8	protein_coding	MTOR associated protein , eak-7 homolog
known_NIR_18391	chr8	120637678	120658588	+	120637678	120673814	A3SS	ENSMUST00000108982.11	known	1.00	87	0	87	0	n	1.00	68	0	68	0	n	1.00	103	0	103	0	n	1.00	104	0	104	0	n	1.00	138	0	138	0	n	0.96	54	2	54	2	y	1.00	89	0	89	0	n	1.00	93	0	93	0	n	1.00	78	0	78	0	n	1.00	96	0	96	0	n	1.00	86	0	86	0	n	1.00	102	0	102	0	n	ENSMUSG00000031826.21	Usp10	chr8	protein_coding	ubiquitin specific peptidase 10
known_NIR_18392	chr8	120663327	120667852	+	120663327	120667849	A3SS	ENSMUST00000144458.8	known	0.27	22	61	22	61	y	0.23	14	48	14	48	y	0.28	25	65	25	65	y	0.31	36	80	36	80	y	0.30	44	101	44	101	y	0.31	21	47	21	47	y	0.30	33	77	33	77	y	0.32	18	39	18	39	y	0.32	20	43	20	43	y	0.32	36	77	36	77	y	0.34	33	65	33	65	y	0.27	24	65	24	65	y	ENSMUSG00000031826.21	Usp10	chr8	protein_coding	ubiquitin specific peptidase 10
known_NIR_18393	chr8	120668877	120673814	+	120637678	120673814	A5SS	ENSMUST00000108982.11	known	1.00	96	0	96	0	n	1.00	66	0	66	0	n	1.00	126	0	126	0	n	1.00	120	0	120	0	n	1.00	127	0	127	0	n	0.97	72	2	72	2	y	1.00	164	0	164	0	n	1.00	76	0	76	0	n	1.00	96	0	96	0	n	1.00	154	0	154	0	n	1.00	122	0	122	0	n	1.00	110	0	110	0	n	ENSMUSG00000031826.21	Usp10	chr8	protein_coding	ubiquitin specific peptidase 10
known_NIR_18394	chr8	120670985	120673814	+	120668877	120673814	A5SS	ENSMUST00000144458.8	known	0.01	1	96	1	96	n	0.00	0	66	0	66	n	0.01	1	126	1	126	n	0.00	0	120	0	120	n	0.01	1	127	1	127	n	0.00	0	72	0	72	n	0.00	0	164	0	164	n	0.00	0	76	0	76	n	0.02	2	96	2	96	y	0.00	0	154	0	154	n	0.00	0	122	0	122	n	0.00	0	110	0	110	n	ENSMUSG00000031826.21	Usp10	chr8	protein_coding	ubiquitin specific peptidase 10
known_NIR_18395	chr8	120680084	120682937	+	120680084	120681528	3pMXE	ENSMUST00000137310.2	known	0.00	0	129	0	129	n	0.00	0	145	0	145	n	0.01	2	149	2	149	y	0.00	0	153	0	153	n	0.00	1	230	1	230	n	0.00	0	109	0	109	n	0.01	1	199	1	199	n	0.00	0	94	0	94	n	0.00	0	122	0	122	n	0.00	0	189	0	189	n	0.00	0	186	0	186	n	0.00	0	150	0	150	n	ENSMUSG00000031826.21	Usp10	chr8	protein_coding	ubiquitin specific peptidase 10
known_NIR_18396	chr8	120680084	120682937	+	120680084;120681672	120681528;120682937	ES	ENSMUST00000144458.8	known	0.00	0	136.0	0	129;143	n	0.00	0	141.0	0	145;137	n	0.01	2	137.0	2	149;125	y	0.00	0	142.5	0	153;132	n	0.00	1	215.5	1	230;201	n	0.00	0	92.5	0	109;76	n	0.01	1	197.0	1	199;195	n	0.00	0	98.0	0	94;102	n	0.00	0	117.5	0	122;113	n	0.00	0	183.5	0	189;178	n	0.00	0	175.0	0	186;164	n	0.00	0	139.0	0	150;128	n	ENSMUSG00000031826.21	Usp10	chr8	protein_coding	ubiquitin specific peptidase 10
known_NIR_18397	chr8	120819740	120827593	-	120819740	120827831	A5SS	ENSMUST00000034280.9	known	0.00	0	18	0	18	n	0.06	1	15	1	15	n	0.04	1	25	1	25	n	0.03	1	29	1	29	n	0.00	0	40	0	40	n	0.00	0	19	0	19	n	0.04	1	23	1	23	n	0.11	2	17	2	17	y	0.00	0	14	0	14	n	0.03	1	33	1	33	n	0.00	0	21	0	21	n	0.06	2	30	2	30	y	ENSMUSG00000031823.15	Zdhhc7	chr8	protein_coding	zinc finger, DHHC domain containing 7
known_NIR_18398	chr8	121289564	121290404	+	121289564	121293107	A3SS	ENSMUST00000034279.16	known	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.08	2	24	2	24	y	0.00	0	13	0	13	n	0.03	1	37	1	37	n	0.00	0	5	0	5	n	0.17	2	10	2	10	y	0.08	1	12	1	12	n	0.00	0	11	0	11	n	0.06	1	15	1	15	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	ENSMUSG00000031822.21	Gse1	chr8	protein_coding	genetic suppressor element 1, coiled-coil protein
known_NIR_18399	chr8	121355256	121360881	-	121355256	121361007	A5SS	ENSMUST00000123927.9	known	0.00	0	16	0	16	n	0.00	0	41	0	41	n	0.06	1	16	1	16	n	0.00	0	26	0	26	n	0.00	0	24	0	24	n	0.00	0	6	0	6	n	0.02	1	42	1	42	n	0.12	2	14	2	14	y	0.00	0	28	0	28	n	0.02	1	43	1	43	n	0.00	0	19	0	19	n	0.00	0	41	0	41	n	ENSMUSG00000043687.17	1190005I06Rik	chr8	protein_coding	RIKEN cDNA 1190005I06 gene
known_NIR_18400	chr8	121355256	121394496	-	121355256	121361007	5pMXE	ENSMUST00000123927.9	known	0.00	0	16	0	16	n	0.00	0	41	0	41	n	0.11	2	16	2	16	y	0.00	0	26	0	26	n	0.00	0	24	0	24	n	0.25	2	6	2	6	n	0.00	0	42	0	42	n	0.00	0	14	0	14	n	0.00	0	28	0	28	n	0.00	0	43	0	43	n	0.00	0	19	0	19	n	0.00	0	41	0	41	n	ENSMUSG00000043687.17	1190005I06Rik	chr8	protein_coding	RIKEN cDNA 1190005I06 gene
known_NIR_18401	chr8	121385813;121386926	121386698;121387523	-	121385813	121387523	cassetteExon	ENSMUST00000034277.14	known	0.01	1.0	66	2;0	66	n	0.00	0.0	72	0;0	72	n	0.01	1.0	70	2;0	70	n	0.05	4.0	77	4;4	77	y	0.02	1.5	91	2;1	91	n	0.01	0.5	49	1;0	49	n	0.04	5.0	112	6;4	112	y	0.03	1.5	46	2;1	46	n	0.06	2.5	42	2;3	42	y	0.09	7.0	75	6;8	75	y	0.09	7.0	67	12;2	67	y	0.02	2.0	81	4;0	81	n	ENSMUSG00000031819.14	Emc8	chr8	protein_coding	ER membrane protein complex subunit 8
known_NIR_18402	chr8	121387409	121387523	-	121385813	121387523	A3SS	ENSMUST00000034277.14	known	0.00	0	66	0	66	n	0.05	4	72	4	72	y	0.07	5	70	5	70	y	0.04	3	77	3	77	y	0.03	3	91	3	91	y	0.04	2	49	2	49	y	0.02	2	112	2	112	y	0.10	5	46	5	46	y	0.07	3	42	3	42	y	0.01	1	75	1	75	n	0.01	1	67	1	67	n	0.02	2	81	2	81	y	ENSMUSG00000031819.14	Emc8	chr8	protein_coding	ER membrane protein complex subunit 8
known_NIR_18403	chr8	121387599	121394496	-	121355256	121394496	A3SS	ENSMUST00000181333.2	known	1.00	84	0	84	0	n	1.00	81	0	81	0	n	0.97	73	2	73	2	y	1.00	78	0	78	0	n	1.00	97	0	97	0	n	0.96	43	2	43	2	y	1.00	106	0	106	0	n	1.00	32	0	32	0	n	1.00	66	0	66	0	n	1.00	107	0	107	0	n	1.00	83	0	83	0	n	1.00	107	0	107	0	n	ENSMUSG00000097919.2	Gm27021	chr8	protein_coding	predicted gene, 27021
known_NIR_18404	chr8	121395090	121396048	+	121395094	121396048	A5SS	ENSMUST00000034276.13	known	0.00	2	1090	2	1090	y	0.00	2	1179	2	1179	y	0.00	0	1267	0	1267	n	0.00	2	1232	2	1232	y	0.00	4	1502	4	1502	y	0.00	0	863	0	863	n	0.00	4	1657	4	1657	y	0.00	3	736	3	736	y	0.00	3	1210	3	1210	y	0.01	10	1791	10	1791	y	0.00	6	1556	6	1556	y	0.00	2	1641	2	1641	y	ENSMUSG00000031818.13	Cox4i1	chr8	protein_coding	cytochrome c oxidase subunit 4I1
known_NIR_18405	chr8	121395090	121396048	+	121395114	121396048	A5SS	ENSMUST00000181586.8	known	0.05	2	36	2	36	y	0.06	2	33	2	33	y	0.00	0	44	0	44	n	0.04	2	45	2	45	y	0.11	4	31	4	31	y	0.00	0	29	0	29	n	0.07	4	55	4	55	y	0.11	3	25	3	25	y	0.08	3	35	3	35	y	0.15	10	58	10	58	y	0.10	6	53	6	53	y	0.03	2	56	2	56	y	ENSMUSG00000031818.13	Cox4i1	chr8	protein_coding	cytochrome c oxidase subunit 4I1
known_NIR_18406	chr8	121395114	121396048	+	121395094	121396048	A5SS	ENSMUST00000034276.13	known	0.03	36	1090	36	1090	y	0.03	33	1179	33	1179	y	0.03	44	1267	44	1267	y	0.04	45	1232	45	1232	y	0.02	31	1502	31	1502	y	0.03	29	863	29	863	y	0.03	55	1657	55	1657	y	0.03	25	736	25	736	y	0.03	35	1210	35	1210	y	0.03	58	1791	58	1791	y	0.03	53	1556	53	1556	y	0.03	56	1641	56	1641	y	ENSMUSG00000031818.13	Cox4i1	chr8	protein_coding	cytochrome c oxidase subunit 4I1
known_NIR_18407	chr8	121396121	121397742	+	121396121	121399468	A3SS	ENSMUST00000181795.2	known	-	-	-	-	-	-	0.09	2	20	2	20	y	0.00	0	16	0	16	n	0.05	1	21	1	21	n	0.06	2	30	2	30	y	-	-	-	-	-	-	0.03	1	28	1	28	n	0.00	0	13	0	13	n	1.00	1	0	1	0	n	0.06	1	16	1	16	n	1.00	1	0	1	0	n	0.05	1	21	1	21	n	ENSMUSG00000031818.13	Cox4i1	chr8	protein_coding	cytochrome c oxidase subunit 4I1
known_NIR_18408	chr8	121396121	121399468	+	121396121	121399464	A3SS	ENSMUST00000034276.13	known	0.00	0	2362	0	2362	n	0.01	20	2588	20	2588	y	0.01	16	2686	16	2686	y	0.01	21	2344	21	2344	y	0.01	30	2905	30	2905	y	0.00	0	1622	0	1622	n	0.01	28	3460	28	3460	y	0.01	13	1570	13	1570	y	0.00	0	2384	0	2384	n	0.00	16	3617	16	3617	y	0.00	0	3027	0	3027	n	0.01	21	3270	21	3270	y	ENSMUSG00000031818.13	Cox4i1	chr8	protein_coding	cytochrome c oxidase subunit 4I1
known_NIR_18409	chr8	121830914	121831131	-	121829743	121831131	A3SS	ENSMUST00000047282.12	known	0.00	0	44	0	44	n	0.06	3	47	3	47	y	0.06	2	32	2	32	y	0.11	5	41	5	41	y	0.00	0	45	0	45	n	0.00	0	27	0	27	n	0.09	4	42	4	42	y	0.06	2	32	2	32	y	0.14	5	31	5	31	y	0.00	0	54	0	54	n	0.02	1	52	1	52	n	0.02	1	45	1	45	n	ENSMUSG00000031816.16	Mthfsd	chr8	protein_coding	methenyltetrahydrofolate synthetase domain containing
known_NIR_18410	chr8	121830914	121831131	-	121830919	121831131	A3SS	ENSMUST00000145991.2	known	0.00	0	14	0	14	n	0.25	3	9	3	9	y	0.67	2	1	2	1	n	0.56	5	4	5	4	n	0.00	0	16	0	16	n	0.00	0	4	0	4	n	0.24	4	13	4	13	y	0.29	2	5	2	5	n	0.62	5	3	5	3	n	0.00	0	13	0	13	n	0.06	1	17	1	17	n	0.08	1	11	1	11	n	ENSMUSG00000031816.16	Mthfsd	chr8	protein_coding	methenyltetrahydrofolate synthetase domain containing
known_NIR_18411	chr8	121830919	121831131	-	121829743	121831131	A3SS	ENSMUST00000047282.12	known	0.24	14	44	14	44	y	0.16	9	47	9	47	y	0.03	1	32	1	32	n	0.09	4	41	4	41	y	0.26	16	45	16	45	y	0.13	4	27	4	27	y	0.24	13	42	13	42	y	0.14	5	32	5	32	y	0.09	3	31	3	31	y	0.19	13	54	13	54	y	0.25	17	52	17	52	y	0.20	11	45	11	45	y	ENSMUSG00000031816.16	Mthfsd	chr8	protein_coding	methenyltetrahydrofolate synthetase domain containing
known_NIR_18412	chr8	121831244	121832313	-	121831297	121832313	A3SS	ENSMUST00000128052.8	known	0.78	35	10	35	10	y	1.00	35	0	35	0	n	0.98	40	1	40	1	n	0.94	33	2	33	2	y	0.90	54	6	54	6	y	0.85	34	6	34	6	y	0.90	52	6	52	6	y	1.00	25	0	25	0	n	0.88	35	5	35	5	y	0.92	56	5	56	5	y	0.94	45	3	45	3	y	0.85	34	6	34	6	y	ENSMUSG00000031816.16	Mthfsd	chr8	protein_coding	methenyltetrahydrofolate synthetase domain containing
known_NIR_18413	chr8	121831244	121832457	-	121831244	121832313	5pMXE	ENSMUST00000138908.8	known	0.12	5	35	5	35	y	0.19	8	35	8	35	y	0.17	8	40	8	40	y	0.23	10	33	10	33	y	0.10	6	54	6	54	y	0.03	1	34	1	34	n	0.02	1	52	1	52	n	0.04	1	25	1	25	n	0.05	2	35	2	35	y	0.12	8	56	8	56	y	0.04	2	45	2	45	y	0.17	7	34	7	34	y	ENSMUSG00000031816.16	Mthfsd	chr8	protein_coding	methenyltetrahydrofolate synthetase domain containing
known_NIR_18414	chr8	121831244;121832426	121832313;121833609	-	121831244;121832570	121832457;121833609	MXE	ENSMUST00000047282.12	known	0.87	32.5	5.0	35;30	5;5	y	0.82	34.5	7.5	35;34	8;7	y	0.82	35.5	8.0	40;31	8;8	y	0.80	35.5	9.0	33;38	10;8	y	0.90	56.5	6.5	54;59	6;7	y	0.95	26.0	1.5	34;18	1;2	n	0.93	41.5	3.0	52;31	1;5	n	0.91	21.0	2.0	25;17	1;3	n	0.91	29.0	3.0	35;23	2;4	y	0.86	52.0	8.5	56;48	8;9	y	0.91	41.0	4.0	45;37	2;6	y	0.76	32.0	10.0	34;30	7;13	y	ENSMUSG00000031816.16	Mthfsd	chr8	protein_coding	methenyltetrahydrofolate synthetase domain containing
known_NIR_18415	chr8	121831297;121832570	121832457;121833609	-	121831297;121832426	121832313;121833609	MXE	ENSMUST00000128052.8	known	0.13	3.0	20.0	1;5	10;30	n	0.17	3.5	17.0	0;7	0;34	n	0.20	4.0	16.0	0;8	1;31	n	0.17	4.0	20.0	0;8	2;38	n	0.13	5.0	32.5	3;7	6;59	y	0.08	1.0	12.0	0;2	6;18	n	0.12	2.5	18.5	0;5	6;31	n	0.23	2.5	8.5	2;3	0;17	n	0.12	2.0	14.0	0;4	5;23	n	0.16	5.0	26.5	1;9	5;48	n	0.13	3.0	20.0	0;6	3;37	n	0.28	7.0	18.0	1;13	6;30	n	ENSMUSG00000031816.16	Mthfsd	chr8	protein_coding	methenyltetrahydrofolate synthetase domain containing
known_NIR_18416	chr8	121833712	121834261	-	121833712	121835027	A5SS	ENSMUST00000116415.9	known	0.04	1	25	1	25	n	0.00	0	16	0	16	n	0.00	0	36	0	36	n	0.04	1	25	1	25	n	0.00	0	30	0	30	n	0.00	0	24	0	24	n	0.07	2	28	2	28	y	0.00	0	22	0	22	n	0.05	1	18	1	18	n	0.03	1	34	1	34	n	0.09	2	21	2	21	y	0.00	0	22	0	22	n	ENSMUSG00000031816.16	Mthfsd	chr8	protein_coding	methenyltetrahydrofolate synthetase domain containing
known_NIR_18417	chr8	121833712	121834933	-	121833712	121834261	5pMXE	ENSMUST00000156606.8	known	0.80	4	1	4	1	n	1.00	4	0	4	0	n	1.00	12	0	12	0	n	0.94	16	1	16	1	n	1.00	20	0	20	0	n	1.00	6	0	6	0	n	0.91	20	2	20	2	y	1.00	13	0	13	0	n	0.86	6	1	6	1	n	0.94	16	1	16	1	n	0.90	18	2	18	2	y	1.00	9	0	9	0	n	ENSMUSG00000031816.16	Mthfsd	chr8	protein_coding	methenyltetrahydrofolate synthetase domain containing
known_NIR_18418	chr8	121833712	121835027	-	121833712	121834933	A5SS	ENSMUST00000047282.12	known	0.86	25	4	25	4	y	0.80	16	4	16	4	y	0.75	36	12	36	12	y	0.61	25	16	25	16	y	0.60	30	20	30	20	y	0.80	24	6	24	6	y	0.58	28	20	28	20	y	0.63	22	13	22	13	y	0.75	18	6	18	6	y	0.68	34	16	34	16	y	0.54	21	18	21	18	y	0.71	22	9	22	9	y	ENSMUSG00000031816.16	Mthfsd	chr8	protein_coding	methenyltetrahydrofolate synthetase domain containing
known_NIR_18419	chr8	122282098	122282859	-	122282098	122282981	A5SS	ENSMUST00000059018.14	known	0.00	1	201	1	201	n	0.00	1	202	1	202	n	0.01	4	532	4	532	y	0.00	0	226	0	226	n	0.00	1	412	1	412	n	0.01	3	394	3	394	y	0.00	2	564	2	564	y	0.01	2	284	2	284	y	0.02	2	130	2	130	y	0.01	3	284	3	284	y	0.00	0	169	0	169	n	0.00	0	223	0	223	n	ENSMUSG00000052934.15	Fbxo31	chr8	protein_coding	F-box protein 31
known_NIR_18420	chr8	122287201	122293014	-	122291463	122293014	3pMXE	ENSMUST00000181663.2	known	0.83	128	26	128	26	y	0.84	132	26	132	26	y	0.91	365	38	365	38	y	0.89	175	22	175	22	y	0.90	323	37	323	37	y	0.89	250	31	250	31	y	0.71	354	145	354	145	y	0.88	220	29	220	29	y	0.89	79	10	79	10	y	0.91	177	18	177	18	y	0.90	127	14	127	14	y	0.90	156	17	156	17	y	ENSMUSG00000052934.15	Fbxo31	chr8	protein_coding	F-box protein 31
known_NIR_18421	chr8	122287201;122291463	122291377;122293014	-	122287201	122293014	cassetteExon	ENSMUST00000059018.14	known	0.17	25.5	128	25;26	128	y	0.17	28.0	132	30;26	132	y	0.09	35.5	365	33;38	365	y	0.11	22.5	175	23;22	175	y	0.12	42.0	323	47;37	323	y	0.12	34.0	250	37;31	250	y	0.28	137.0	354	129;145	354	y	0.13	32.0	220	35;29	220	y	0.11	10.0	79	10;10	79	y	0.09	17.5	177	17;18	177	y	0.11	16.5	127	19;14	127	y	0.10	16.5	156	16;17	156	y	ENSMUSG00000052934.15	Fbxo31	chr8	protein_coding	F-box protein 31
known_NIR_18422	chr8	122320389	122322725	+	122320284	122322725	A5SS	ENSMUST00000034270.17	known	0.01	9	697	9	697	y	0.00	1	715	1	715	n	0.00	5	1302	5	1302	y	0.00	0	780	0	780	n	0.01	7	1180	7	1180	y	0.00	2	725	2	725	y	0.00	2	1312	2	1312	y	0.01	4	777	4	777	y	0.00	2	521	2	521	y	0.00	3	856	3	856	y	0.00	2	562	2	562	y	0.00	2	737	2	737	y	ENSMUSG00000031812.17	Map1lc3b	chr8	protein_coding	microtubule-associated protein 1 light chain 3 beta
known_NIR_18423	chr8	122328988	122330547	-	122329070	122330547	A3SS	ENSMUST00000046386.5	known	0.44	7	9	7	9	y	0.44	7	9	7	9	y	0.12	3	23	3	23	y	0.16	3	16	3	16	y	0.52	16	15	16	15	y	0.30	3	7	3	7	y	0.19	3	13	3	13	y	0.53	8	7	8	7	y	0.45	5	6	5	6	y	0.30	6	14	6	14	y	0.38	5	8	5	8	y	0.17	4	19	4	19	y	ENSMUSG00000061410.7	Zcchc14	chr8	protein_coding	zinc finger, CCHC domain containing 14
known_NIR_18424	chr8	122531845	122532015	-	122531845	122533245	A5SS	ENSMUST00000045884.17	known	0.00	0	26	0	26	n	0.00	0	31	0	31	n	0.02	1	40	1	40	n	0.00	0	36	0	36	n	0.00	0	52	0	52	n	0.05	2	40	2	40	y	0.00	0	48	0	48	n	0.00	0	38	0	38	n	0.00	0	37	0	37	n	0.00	0	45	0	45	n	0.00	0	41	0	41	n	0.00	0	36	0	36	n	ENSMUSG00000040263.17	Klhdc4	chr8	protein_coding	kelch domain containing 4
known_NIR_18425	chr8	122702730	122705341	+	122702730	122705294	A3SS	ENSMUST00000172628.8	known	0.00	0	20	0	20	n	0.18	3	14	3	14	y	0.20	2	8	2	8	y	0.00	0	16	0	16	n	0.00	0	32	0	32	n	0.00	0	6	0	6	n	0.00	0	21	0	21	n	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	17	0	17	n	0.17	2	10	2	10	y	ENSMUSG00000025316.17	Banp	chr8	protein_coding	BTG3 associated nuclear protein
known_NIR_18426	chr8	122705493	122718267	+	122705493	122716694	3pMXE	ENSMUST00000172513.2	known	0.48	10	11	10	11	y	0.50	4	4	4	4	n	0.00	0	10	0	10	n	0.58	19	14	19	14	y	0.52	14	13	14	13	y	0.50	2	2	2	2	n	0.80	8	2	8	2	y	0.54	7	6	7	6	y	0.62	5	3	5	3	n	0.40	4	6	4	6	y	0.47	9	10	9	10	y	0.31	4	9	4	9	y	ENSMUSG00000025316.17	Banp	chr8	protein_coding	BTG3 associated nuclear protein
known_NIR_18427	chr8	122705493;122716810	122716694;122718267	+	122705493	122718267	cassetteExon	ENSMUST00000172628.8	known	0.53	11.5	10	11;12	10	y	0.58	5.5	4	4;7	4	y	1.00	8.0	0	10;6	0	n	0.33	9.5	19	14;5	19	y	0.50	14.0	14	13;15	14	y	0.60	3.0	2	2;4	2	n	0.30	3.5	8	2;5	8	y	0.46	6.0	7	6;6	7	y	0.33	2.5	5	3;2	5	y	0.56	5.0	4	6;4	4	y	0.51	9.5	9	10;9	9	y	0.64	7.0	4	9;5	4	y	ENSMUSG00000025316.17	Banp	chr8	protein_coding	BTG3 associated nuclear protein
known_NIR_18428	chr8	122732421	122733830	+	122732421	122733839	A3SS	ENSMUST00000093078.13	known	0.75	18	6	18	6	y	0.45	10	12	10	12	y	0.67	8	4	8	4	y	0.54	7	6	7	6	y	0.64	14	8	14	8	y	0.90	9	1	9	1	n	0.48	13	14	13	14	y	0.77	10	3	10	3	y	0.50	7	7	7	7	y	0.55	11	9	11	9	y	0.41	9	13	9	13	y	0.58	15	11	15	11	y	ENSMUSG00000025316.17	Banp	chr8	protein_coding	BTG3 associated nuclear protein
known_NIR_18429	chr8	122734530	122750742	+	122734530	122747258	3pMXE	ENSMUST00000173925.8	known	0.07	2	26	2	26	y	0.07	2	27	2	27	y	0.12	1	7	1	7	n	0.14	3	19	3	19	y	0.04	1	23	1	23	n	0.00	0	12	0	12	n	0.08	2	23	2	23	y	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.10	3	26	3	26	y	0.00	0	23	0	23	n	0.26	8	23	8	23	y	ENSMUSG00000025316.17	Banp	chr8	protein_coding	BTG3 associated nuclear protein
known_NIR_18430	chr8	122734530	122750742	+	122734530;122747383	122747258;122750742	ES	ENSMUST00000093078.13	known	0.07	2	27.5	2	26;29	y	0.06	2	30.0	2	27;33	y	0.09	1	10.5	1	7;14	n	0.12	3	21.0	3	19;23	y	0.04	1	27.5	1	23;32	n	0.00	0	12.0	0	12;12	n	0.06	2	31.0	2	23;39	y	0.00	0	10.0	0	5;15	n	0.00	0	16.0	0	13;19	n	0.10	3	26.0	3	26;26	y	0.00	0	26.5	0	23;30	n	0.27	8	22.0	8	23;21	y	ENSMUSG00000025316.17	Banp	chr8	protein_coding	BTG3 associated nuclear protein
known_NIR_18431	chr8	123034146	123034231	+	123032219	123034231	A5SS	ENSMUST00000054052.15	known	0.09	7	71	7	71	y	0.07	5	65	5	65	y	0.12	12	88	12	88	y	0.08	7	76	7	76	y	0.17	21	101	21	101	y	0.24	11	34	11	34	y	0.19	17	72	17	72	y	0.26	19	53	19	53	y	0.08	6	73	6	73	y	0.15	21	117	21	117	y	0.07	4	55	4	55	y	0.09	10	105	10	105	y	ENSMUSG00000049577.16	Zfpm1	chr8	protein_coding	zinc finger protein, multitype 1
known_NIR_18432	chr8	123061998	123062252	+	123061998	123062171	A3SS	ENSMUST00000054052.15	known	0.05	6	114	6	114	y	0.08	7	85	7	85	y	0.06	9	138	9	138	y	0.03	4	123	4	123	y	0.06	8	134	8	134	y	0.06	3	45	3	45	y	0.09	9	90	9	90	y	0.00	0	79	0	79	n	0.00	0	81	0	81	n	0.03	6	169	6	169	y	0.03	3	110	3	110	y	0.00	0	99	0	99	n	ENSMUSG00000049577.16	Zfpm1	chr8	protein_coding	zinc finger protein, multitype 1
known_NIR_18433	chr8	123113685	123124557	+	123113685	123114432	3pMXE	ENSMUST00000177386.2	known	0.57	33	25	33	25	y	0.59	24	17	24	17	y	0.66	37	19	37	19	y	0.62	43	26	43	26	y	0.63	46	27	46	27	y	0.63	22	13	22	13	y	0.65	44	24	44	24	y	0.49	22	23	22	23	y	0.64	30	17	30	17	y	0.59	56	39	56	39	y	0.69	31	14	31	14	y	0.58	34	25	34	25	y	ENSMUSG00000017478.16	Zc3h18	chr8	protein_coding	zinc finger CCCH-type containing 18
known_NIR_18434	chr8	123113685	123124557	+	123113685;123114503	123114432;123124557	ES	ENSMUST00000017622.12	known	0.59	33	23.0	33	25;21	y	0.58	24	17.5	24	17;18	y	0.69	37	17.0	37	19;15	y	0.64	43	24.0	43	26;22	y	0.62	46	28.5	46	27;30	y	0.62	22	13.5	22	13;14	y	0.65	44	23.5	44	24;23	y	0.52	22	20.0	22	23;17	y	0.63	30	17.5	30	17;18	y	0.63	56	33.5	56	39;28	y	0.69	31	14.0	31	14;14	y	0.60	34	22.5	34	25;20	y	ENSMUSG00000017478.16	Zc3h18	chr8	protein_coding	zinc finger CCCH-type containing 18
known_NIR_18435	chr8	123135107	123138023	+	123135107	123137620	3pMXE	ENSMUST00000175798.2	known	0.02	1	52	1	52	n	0.00	0	37	0	37	n	0.00	0	43	0	43	n	0.00	0	38	0	38	n	0.00	0	72	0	72	n	0.00	0	25	0	25	n	0.04	2	52	2	52	y	0.00	0	31	0	31	n	0.00	0	44	0	44	n	0.00	0	61	0	61	n	0.00	0	47	0	47	n	0.05	2	37	2	37	y	ENSMUSG00000017478.16	Zc3h18	chr8	protein_coding	zinc finger CCCH-type containing 18
known_NIR_18436	chr8	123135107	123138023	+	123135107;123137724	123137620;123138023	ES	ENSMUST00000017622.12	known	0.02	1	41.5	1	52;31	n	0.00	0	37.5	0	37;38	n	0.00	0	40.5	0	43;38	n	0.00	0	42.5	0	38;47	n	0.00	0	63.5	0	72;55	n	0.00	0	26.0	0	25;27	n	0.04	2	54.5	2	52;57	y	0.00	0	30.0	0	31;29	n	0.00	0	32.0	0	44;20	n	0.00	0	61.5	0	61;62	n	0.00	0	48.0	0	47;49	n	0.05	2	40.0	2	37;43	y	ENSMUSG00000017478.16	Zc3h18	chr8	protein_coding	zinc finger CCCH-type containing 18
known_NIR_18437	chr8	123135107	123138023	+	123137724	123138023	A5SS	ENSMUST00000177123.2	known	0.03	1	31	1	31	n	0.00	0	38	0	38	n	0.00	0	38	0	38	n	0.00	0	47	0	47	n	0.00	0	55	0	55	n	0.00	0	27	0	27	n	0.03	2	57	2	57	y	0.00	0	29	0	29	n	0.00	0	20	0	20	n	0.00	0	62	0	62	n	0.00	0	49	0	49	n	0.04	2	43	2	43	y	ENSMUSG00000017478.16	Zc3h18	chr8	protein_coding	zinc finger CCCH-type containing 18
known_NIR_18438	chr8	123138166	123139729	+	123138166;123138442	123138377;123139729	ES	ENSMUST00000017622.12	known	0.00	0	45.0	0	43;47	n	0.00	0	35.5	0	29;42	n	0.03	1	35.0	1	32;38	n	0.00	0	53.0	0	59;47	n	0.00	0	75.5	0	63;88	n	0.00	0	19.5	0	20;19	n	0.03	2	62.0	2	65;59	y	0.04	1	27.5	1	25;30	n	0.00	0	40.0	0	40;40	n	0.03	2	66.0	2	65;67	y	0.00	0	56.5	0	56;57	n	0.00	0	55.0	0	54;56	n	ENSMUSG00000017478.16	Zc3h18	chr8	protein_coding	zinc finger CCCH-type containing 18
known_NIR_18439	chr8	123153006;123153758	123153675;123153968	-	123153006	123153968	cassetteExon	ENSMUST00000212600.2	known	0.99	69.5	1	68;71	1	n	0.96	74.5	3	87;62	3	y	0.91	61.0	6	61;61	6	y	1.00	34.0	0	38;30	0	n	0.99	72.5	1	86;59	1	n	1.00	31.5	0	35;28	0	n	0.96	76.5	3	88;65	3	y	0.98	39.5	1	39;40	1	n	1.00	30.5	0	34;27	0	n	0.95	37.0	2	39;35	2	y	0.98	41.5	1	46;37	1	n	0.98	41.0	1	47;35	1	n	ENSMUSG00000006519.12	Cyba	chr8	protein_coding	cytochrome b-245, alpha polypeptide
known_NIR_18440	chr8	123166491	123166921	-	123166491;123166797	123166695;123166921	ES	ENSMUST00000211883.2	known	0.99	59	0.5	59	0;1	n	1.00	15	0.0	15	0;0	n	0.98	90	2.0	90	0;4	n	1.00	47	0.0	47	0;0	n	0.98	149	2.5	149	0;5	n	0.97	104	3.5	104	1;6	n	0.98	88	1.5	88	0;3	n	0.99	67	1.0	67	1;1	n	0.99	66	1.0	66	1;1	n	0.99	90	0.5	90	0;1	n	0.99	78	1.0	78	0;2	n	0.97	63	2.0	63	2;2	y	ENSMUSG00000006517.6	Mvd	chr8	protein_coding	mevalonate (diphospho) decarboxylase
known_NIR_18441	chr8	123197095	123202384	-	123197095	123202602	A5SS	ENSMUST00000014614.4	known	0.00	0	20	0	20	n	0.14	2	12	2	12	y	0.06	1	16	1	16	n	0.00	0	14	0	14	n	0.04	1	24	1	24	n	0.00	0	17	0	17	n	0.00	0	20	0	20	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.00	0	18	0	18	n	0.00	0	24	0	24	n	0.00	0	14	0	14	n	ENSMUSG00000014470.5	Rnf166	chr8	protein_coding	ring finger protein 166
known_NIR_18442	chr8	123203999	123204924	+	123203975	123204924	A5SS	ENSMUST00000116412.8	known	0.00	0	35	0	35	n	0.04	1	26	1	26	n	0.11	4	32	4	32	y	0.00	0	23	0	23	n	0.00	0	36	0	36	n	0.00	0	15	0	15	n	0.00	0	23	0	23	n	0.05	1	18	1	18	n	0.06	1	15	1	15	n	0.00	0	34	0	34	n	0.00	0	27	0	27	n	0.00	0	37	0	37	n	ENSMUSG00000049482.17	Ctu2	chr8	protein_coding	cytosolic thiouridylase subunit 2
known_NIR_18443	chr8	123207744	123207872	+	123207744	123207825	A3SS	ENSMUST00000116412.8	known	0.10	4	36	4	36	y	0.24	9	29	9	29	y	0.04	2	48	2	48	y	0.15	5	28	5	28	y	0.08	4	48	4	48	y	0.00	0	26	0	26	n	0.20	11	44	11	44	y	0.12	2	15	2	15	y	0.02	1	52	1	52	n	0.12	6	44	6	44	y	0.02	1	50	1	50	n	0.19	7	29	7	29	y	ENSMUSG00000049482.17	Ctu2	chr8	protein_coding	cytosolic thiouridylase subunit 2
known_NIR_18444	chr8	123302274	123303254	-	123302274	123302858	A5SS	ENSMUST00000213029.2	known	0.95	206	11	206	11	y	0.94	206	13	206	13	y	0.99	141	1	141	1	n	0.94	198	12	198	12	y	0.94	204	12	204	12	y	0.94	85	5	85	5	y	0.97	231	8	231	8	y	0.97	95	3	95	3	y	0.92	112	10	112	10	y	0.97	231	8	231	8	y	0.95	150	8	150	8	y	0.93	200	16	200	16	y	ENSMUSG00000006589.9	Aprt	chr8	protein_coding	adenine phosphoribosyl transferase
known_NIR_18445	chr8	123302274	123303254	-	123302970	123303254	3pMXE	ENSMUST00000211810.2	known	0.98	206	5	206	5	y	0.96	206	9	206	9	y	0.97	141	4	141	4	y	0.98	198	5	198	5	y	0.94	204	12	204	12	y	0.98	85	2	85	2	y	0.98	231	5	231	5	y	0.98	95	2	95	2	y	0.98	112	2	112	2	y	0.97	231	7	231	7	y	0.97	150	5	150	5	y	0.98	200	5	200	5	y	ENSMUSG00000006589.9	Aprt	chr8	protein_coding	adenine phosphoribosyl transferase
known_NIR_18446	chr8	123302274;123302745	123302620;123302858	-	123302274	123302858	cassetteExon	ENSMUST00000212093.2	known	0.00	0.0	11	0;0	11	n	0.07	1.0	13	2;0	13	n	0.00	0.0	1	0;0	1	n	0.00	0.0	12	0;0	12	n	0.14	2.0	12	2;2	12	y	0.09	0.5	5	1;0	5	n	0.24	2.5	8	4;1	8	n	0.00	0.0	3	0;0	3	n	0.00	0.0	10	0;0	10	n	0.00	0.0	8	0;0	8	n	0.00	0.0	8	0;0	8	n	0.00	0.0	16	0;0	16	n	ENSMUSG00000006589.9	Aprt	chr8	protein_coding	adenine phosphoribosyl transferase
known_NIR_18447	chr8	123302274;123302970	123302620;123303254	-	123302274	123303254	cassetteExon	ENSMUST00000006764.9	known	0.01	2.5	206	0;5	206	n	0.03	5.5	206	2;9	206	y	0.01	2.0	141	0;4	141	n	0.01	2.5	198	0;5	198	n	0.03	7.0	204	2;12	204	y	0.02	1.5	85	1;2	85	n	0.02	4.5	231	4;5	231	y	0.01	1.0	95	0;2	95	n	0.01	1.0	112	0;2	112	n	0.01	3.5	231	0;7	231	n	0.02	2.5	150	0;5	150	n	0.01	2.5	200	0;5	200	n	ENSMUSG00000006589.9	Aprt	chr8	protein_coding	adenine phosphoribosyl transferase
known_NIR_18448	chr8	123302274;123302970	123302858;123303254	-	123302274	123303254	cassetteExon	ENSMUST00000006764.9	known	0.04	8.0	206	11;5	206	y	0.05	11.0	206	13;9	206	y	0.02	2.5	141	1;4	141	n	0.04	8.5	198	12;5	198	y	0.06	12.0	204	12;12	204	y	0.04	3.5	85	5;2	85	y	0.03	6.5	231	8;5	231	y	0.03	2.5	95	3;2	95	y	0.05	6.0	112	10;2	112	y	0.03	7.5	231	8;7	231	y	0.04	6.5	150	8;5	150	y	0.05	10.5	200	16;5	200	y	ENSMUSG00000006589.9	Aprt	chr8	protein_coding	adenine phosphoribosyl transferase
known_NIR_18449	chr8	123302274;123302991	123302620;123303254	-	123302274	123303254	cassetteExon	ENSMUST00000006764.9	known	0.00	0.5	206	0;1	206	n	0.01	2.0	206	2;2	206	y	0.01	1.0	141	0;2	141	n	0.00	0.0	198	0;0	198	n	0.01	2.5	204	2;3	204	y	0.02	1.5	85	1;2	85	n	0.02	5.0	231	4;6	231	y	0.01	0.5	95	0;1	95	n	0.00	0.0	112	0;0	112	n	0.01	1.5	231	0;3	231	n	0.00	0.0	150	0;0	150	n	0.00	0.0	200	0;0	200	n	ENSMUSG00000006589.9	Aprt	chr8	protein_coding	adenine phosphoribosyl transferase
known_NIR_18450	chr8	123302274;123302991	123302858;123303254	-	123302274	123303254	cassetteExon	ENSMUST00000006764.9	known	0.03	6.0	206	11;1	206	n	0.04	7.5	206	13;2	206	y	0.01	1.5	141	1;2	141	n	0.03	6.0	198	12;0	198	n	0.04	7.5	204	12;3	204	y	0.04	3.5	85	5;2	85	y	0.03	7.0	231	8;6	231	y	0.02	2.0	95	3;1	95	n	0.04	5.0	112	10;0	112	n	0.02	5.5	231	8;3	231	y	0.03	4.0	150	8;0	150	n	0.04	8.0	200	16;0	200	n	ENSMUSG00000006589.9	Aprt	chr8	protein_coding	adenine phosphoribosyl transferase
known_NIR_18451	chr8	123302991	123303254	-	123302970	123303254	A3SS	ENSMUST00000212093.2	known	0.17	1	5	1	5	n	0.18	2	9	2	9	y	0.33	2	4	2	4	n	0.00	0	5	0	5	n	0.20	3	12	3	12	y	0.50	2	2	2	2	n	0.55	6	5	6	5	y	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.30	3	7	3	7	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	ENSMUSG00000006589.9	Aprt	chr8	protein_coding	adenine phosphoribosyl transferase
known_NIR_18452	chr8	123340747	123341047	+	123340747	123340899	3pMXE	ENSMUST00000212477.2	known	1.00	114	0	114	0	n	1.00	134	0	134	0	n	1.00	108	0	108	0	n	1.00	104	0	104	0	n	1.00	147	0	147	0	n	1.00	73	0	73	0	n	1.00	150	0	150	0	n	1.00	84	0	84	0	n	1.00	85	0	85	0	n	1.00	122	0	122	0	n	0.98	106	2	106	2	y	1.00	133	0	133	0	n	ENSMUSG00000015013.10	Trappc2l	chr8	protein_coding	trafficking protein particle complex 2-like
known_NIR_18453	chr8	123502367	123506685	+	123502329	123506685	A5SS	ENSMUST00000212903.2	known	0.64	7	4	7	4	y	0.78	7	2	7	2	n	0.73	11	4	11	4	y	0.53	18	16	18	16	y	0.45	10	12	10	12	y	0.50	9	9	9	9	y	0.48	11	12	11	12	y	0.60	6	4	6	4	y	0.70	16	7	16	7	y	0.38	6	10	6	10	y	0.71	10	4	10	4	y	0.41	7	10	7	10	y	ENSMUSG00000015016.9	Acsf3	chr8	protein_coding	acyl-CoA synthetase family member 3
known_NIR_18454	chr8	123510840;123512703	123512558;123517329	+	123510840	123517329	cassetteExon	ENSMUST00000212903.2	known	0.98	54.0	1	57;51	1	n	1.00	49.0	0	47;51	0	n	0.92	58.5	5	69;48	5	y	0.93	62.0	5	64;60	5	y	0.98	61.5	1	63;60	1	n	0.96	26.5	1	36;17	1	n	1.00	62.5	0	78;47	0	n	0.96	26.0	1	24;28	1	n	0.98	50.0	1	56;44	1	n	1.00	92.0	0	93;91	0	n	0.96	68.0	3	67;69	3	y	0.97	60.5	2	66;55	2	y	ENSMUSG00000015016.9	Acsf3	chr8	protein_coding	acyl-CoA synthetase family member 3
known_NIR_18455	chr8	123626543	123626718	-	123626546	123626718	A3SS	ENSMUST00000172906.8	known	0.12	3	22	3	22	y	0.12	3	22	3	22	y	0.04	2	45	2	45	y	0.00	0	32	0	32	n	0.00	0	63	0	63	n	0.00	0	23	0	23	n	0.00	0	43	0	43	n	0.00	0	35	0	35	n	0.12	3	22	3	22	y	0.09	4	39	4	39	y	0.00	0	21	0	21	n	0.04	2	54	2	54	y	ENSMUSG00000035569.18	Ankrd11	chr8	protein_coding	ankyrin repeat domain 11
known_NIR_18456	chr8	123626888	123635407	-	123626888	123627341	5pMXE	ENSMUST00000212337.2	known	0.88	15	2	15	2	y	0.72	21	8	21	8	y	0.86	36	6	36	6	y	0.80	28	7	28	7	y	0.73	35	13	35	13	y	0.59	17	12	17	12	y	0.75	38	13	38	13	y	0.82	31	7	31	7	y	0.82	9	2	9	2	y	0.79	50	13	50	13	y	0.79	22	6	22	6	y	0.90	26	3	26	3	y	ENSMUSG00000035569.18	Ankrd11	chr8	protein_coding	ankyrin repeat domain 11
known_NIR_18457	chr8	123626888	123635407	-	123626888;123627437	123627341;123635407	ES	ENSMUST00000172906.8	known	0.94	15	1.0	15	2;0	n	0.76	21	6.5	21	8;5	y	0.88	36	5.0	36	6;4	y	0.81	28	6.5	28	7;6	y	0.76	35	11.0	35	13;9	y	0.65	17	9.0	17	12;6	y	0.76	38	12.0	38	13;11	y	0.78	31	9.0	31	7;11	y	0.90	9	1.0	9	2;0	n	0.81	50	12.0	50	13;11	y	0.76	22	7.0	22	6;8	y	0.84	26	5.0	26	3;7	y	ENSMUSG00000035569.18	Ankrd11	chr8	protein_coding	ankyrin repeat domain 11
known_NIR_18458	chr8	123658797	123701468	-	123642784	123701468	A3SS	ENSMUST00000172906.8	known	0.11	2	16	2	16	y	0.05	1	19	1	19	n	0.00	0	36	0	36	n	0.12	4	29	4	29	y	0.06	3	47	3	47	y	0.00	0	14	0	14	n	0.00	0	44	0	44	n	0.00	0	21	0	21	n	0.00	0	11	0	11	n	0.00	0	31	0	31	n	0.00	0	19	0	19	n	0.00	0	21	0	21	n	ENSMUSG00000035569.18	Ankrd11	chr8	protein_coding	ankyrin repeat domain 11
known_NIR_18459	chr8	123807549;123810682	123810561;123814067	+	123807549	123814067	cassetteExon	ENSMUST00000125975.8	known	0.03	2.0	67	0;4	67	n	0.05	4.0	76	4;4	76	y	0.04	2.5	67	2;3	67	y	0.03	2.0	74	4;0	74	n	0.03	3.0	95	2;4	95	y	0.04	1.5	33	3;0	33	n	0.03	3.5	105	3;4	105	y	0.03	1.5	49	0;3	49	n	0.02	1.5	72	3;0	72	n	0.02	3.0	135	1;5	135	n	0.01	1.0	89	1;1	89	n	0.04	4.5	116	7;2	116	y	ENSMUSG00000000738.19	Spg7	chr8	protein_coding	SPG7, paraplegin matrix AAA peptidase subunit
known_NIR_18460	chr8	123815786	123816814	+	123815786	123816863	A3SS	ENSMUST00000125975.8	known	0.03	2	73	2	73	y	0.03	3	85	3	85	y	0.04	2	48	2	48	y	0.04	3	67	3	67	y	0.04	4	107	4	107	y	0.00	0	49	0	49	n	0.04	3	71	3	71	y	0.02	1	59	1	59	n	0.02	1	46	1	46	n	0.04	4	107	4	107	y	0.00	0	101	0	101	n	0.02	2	86	2	86	y	ENSMUSG00000000738.19	Spg7	chr8	protein_coding	SPG7, paraplegin matrix AAA peptidase subunit
known_NIR_18461	chr8	123820486	123821213	+	123820486	123824133	A3SS	ENSMUST00000135991.2	known	1.00	98	0	98	0	n	0.99	89	1	89	1	n	1.00	76	0	76	0	n	0.99	77	1	77	1	n	1.00	84	0	84	0	n	1.00	34	0	34	0	n	0.99	128	1	128	1	n	1.00	48	0	48	0	n	0.99	70	1	70	1	n	0.99	136	2	136	2	y	0.99	98	1	98	1	n	1.00	93	0	93	0	n	ENSMUSG00000000738.19	Spg7	chr8	protein_coding	SPG7, paraplegin matrix AAA peptidase subunit
known_NIR_18462	chr8	123820486	123821897	+	123820486;123821379	123821213;123821897	ES	ENSMUST00000125975.8	known	0.02	2	100.5	2	98;103	y	0.04	4	91.5	4	89;94	y	0.04	3	82.5	3	76;89	y	0.05	4	80.0	4	77;83	y	0.04	4	98.5	4	84;113	y	0.04	2	44.5	2	34;55	y	0.06	8	127.0	8	128;126	y	0.00	0	59.5	0	48;71	n	0.02	2	95.5	2	70;121	y	0.03	4	139.5	4	136;143	y	0.02	2	108.5	2	98;119	y	0.04	4	108.5	4	93;124	y	ENSMUSG00000000738.19	Spg7	chr8	protein_coding	SPG7, paraplegin matrix AAA peptidase subunit
known_NIR_18463	chr8	123820486	123824133	+	123820486;123821974	123821897;123824133	ES	ENSMUST00000128234.8	known	0.00	0	47.0	0	2;92	n	0.02	1	52.5	1	4;101	n	0.00	0	45.0	0	3;87	n	0.02	1	50.0	1	4;96	n	0.00	0	50.0	0	4;96	n	0.00	0	25.5	0	2;49	n	0.02	1	64.0	1	8;120	n	0.00	0	27.0	0	0;54	n	0.02	1	44.0	1	2;86	n	0.03	2	63.5	2	4;123	y	0.02	1	64.0	1	2;126	n	0.00	0	70.0	0	4;136	n	ENSMUSG00000000738.19	Spg7	chr8	protein_coding	SPG7, paraplegin matrix AAA peptidase subunit
known_NIR_18464	chr8	123820486;123821488	123821213;123821897	+	123820486	123821897	cassetteExon	ENSMUST00000128234.8	known	0.96	49.0	2	98;0	2	n	0.92	44.5	4	89;0	4	n	0.93	39.0	3	76;2	3	y	0.91	38.5	4	77;0	4	n	0.91	42.0	4	84;0	4	n	0.89	17.0	2	34;0	2	n	0.89	64.0	8	128;0	8	n	1.00	24.5	0	48;1	0	n	0.95	35.0	2	70;0	2	n	0.95	69.5	4	136;3	4	y	0.96	49.0	2	98;0	2	n	0.92	46.5	4	93;0	4	n	ENSMUSG00000000738.19	Spg7	chr8	protein_coding	SPG7, paraplegin matrix AAA peptidase subunit
known_NIR_18465	chr8	123821488	123821897	+	123821379	123821897	A5SS	ENSMUST00000125975.8	known	0.00	0	103	0	103	n	0.00	0	94	0	94	n	0.02	2	89	2	89	y	0.00	0	83	0	83	n	0.00	0	113	0	113	n	0.00	0	55	0	55	n	0.00	0	126	0	126	n	0.01	1	71	1	71	n	0.00	0	121	0	121	n	0.02	3	143	3	143	y	0.00	0	119	0	119	n	0.00	0	124	0	124	n	ENSMUSG00000000738.19	Spg7	chr8	protein_coding	SPG7, paraplegin matrix AAA peptidase subunit
known_NIR_18466	chr8	123884341	123884927	-	123884326	123884927	A3SS	ENSMUST00000000755.15	known	0.21	7	27	7	27	y	0.20	2	8	2	8	y	0.71	5	2	5	2	n	0.20	11	45	11	45	y	0.09	2	21	2	21	y	0.67	2	1	2	1	n	0.15	2	11	2	11	y	1.00	5	0	5	0	n	0.34	11	21	11	21	y	0.36	12	21	12	21	y	0.42	15	21	15	21	y	0.18	2	9	2	9	y	ENSMUSG00000000739.15	Sult5a1	chr8	protein_coding	sulfotransferase family 5A, member 1
known_NIR_18467	chr8	123951669	123953086	+	123951707	123953086	A5SS	ENSMUST00000036880.8	known	0.03	2	63	2	63	y	0.09	3	32	3	32	y	0.00	0	57	0	57	n	0.18	9	41	9	41	y	0.06	4	59	4	59	y	0.14	3	19	3	19	y	0.05	3	57	3	57	y	0.05	2	37	2	37	y	0.14	8	50	8	50	y	0.07	6	80	6	80	y	0.02	1	40	1	40	n	0.13	6	39	6	39	y	ENSMUSG00000033862.8	Cdk10	chr8	protein_coding	cyclin-dependent kinase 10
known_NIR_18468	chr8	123953756	123954399	+	123953756;123954264	123954162;123954399	ES	ENSMUST00000036880.8	known	0.00	0	66.0	0	70;62	n	0.00	0	72.0	0	71;73	n	0.00	0	75.0	0	87;63	n	0.00	0	72.0	0	77;67	n	0.00	0	88.5	0	101;76	n	0.05	2	40.0	2	52;28	y	0.00	0	91.0	0	105;77	n	0.03	2	56.5	2	55;58	y	0.00	0	56.0	0	68;44	n	0.00	0	93.5	0	104;83	n	0.00	0	64.5	0	71;58	n	0.00	0	88.5	0	108;69	n	ENSMUSG00000033862.8	Cdk10	chr8	protein_coding	cyclin-dependent kinase 10
known_NIR_18469	chr8	123955673	123955851	+	123955639	123955851	A5SS	ENSMUST00000036880.8	known	0.08	5	57	5	57	y	0.00	0	45	0	45	n	0.03	2	57	2	57	y	0.02	1	48	1	48	n	0.03	3	86	3	86	y	0.00	0	37	0	37	n	0.07	4	57	4	57	y	0.07	3	39	3	39	y	0.07	3	42	3	42	y	0.02	1	63	1	63	n	0.02	1	63	1	63	n	0.00	0	57	0	57	n	ENSMUSG00000033862.8	Cdk10	chr8	protein_coding	cyclin-dependent kinase 10
known_NIR_18470	chr8	123958151	123966213	+	123958151	123958373	3pMXE	ENSMUST00000036880.8	known	0.12	4	29	4	29	y	0.02	1	44	1	44	n	0.03	1	38	1	38	n	0.02	1	40	1	40	n	0.02	1	55	1	55	n	0.00	0	23	0	23	n	0.00	0	47	0	47	n	0.08	2	24	2	24	y	0.00	0	29	0	29	n	0.02	1	41	1	41	n	0.00	0	35	0	35	n	0.00	0	50	0	50	n	ENSMUSG00000033862.8	Cdk10	chr8	protein_coding	cyclin-dependent kinase 10
known_NIR_18471	chr8	123962662	123962889	-	123962588	123962889	A3SS	ENSMUST00000098327.2	known	0.12	2	14	2	14	y	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.07	1	13	1	13	n	0.00	0	26	0	26	n	0.00	0	1	0	1	n	0.38	3	5	3	5	n	0.00	0	2	0	2	n	0.18	3	14	3	14	y	0.07	1	13	1	13	n	0.00	0	9	0	9	n	0.21	3	11	3	11	y	ENSMUSG00000033594.12	Spata2l	chr8	protein_coding	spermatogenesis associated 2-like
known_NIR_18472	chr8	123970534	123971853	-	123970531	123971853	A3SS	ENSMUST00000149490.8	known	0.08	3	33	3	33	y	0.03	1	36	1	36	n	0.10	2	18	2	18	y	0.03	1	31	1	31	n	0.06	2	33	2	33	y	0.00	0	7	0	7	n	0.00	0	27	0	27	n	0.06	1	16	1	16	n	0.00	0	23	0	23	n	0.02	1	46	1	46	n	0.00	0	28	0	28	n	0.04	1	23	1	23	n	ENSMUSG00000001062.19	Vps9d1	chr8	protein_coding	VPS9 domain containing 1
known_NIR_18473	chr8	123971949	123972221	-	123971949	123972246	A5SS	ENSMUST00000149490.8	known	0.10	3	26	3	26	y	0.04	1	22	1	22	n	0.29	5	12	5	12	y	0.12	2	15	2	15	y	0.06	2	30	2	30	y	0.29	2	5	2	5	n	0.17	5	25	5	25	y	0.00	0	16	0	16	n	0.17	2	10	2	10	y	0.11	3	25	3	25	y	0.06	1	17	1	17	n	0.08	2	22	2	22	y	ENSMUSG00000001062.19	Vps9d1	chr8	protein_coding	VPS9 domain containing 1
known_NIR_18474	chr8	123973358	123973464	-	123972812	123973464	A3SS	ENSMUST00000149490.8	known	0.03	1	31	1	31	n	0.03	1	32	1	32	n	0.00	0	18	0	18	n	0.06	2	32	2	32	y	0.00	0	40	0	40	n	0.00	0	11	0	11	n	0.00	0	21	0	21	n	0.00	0	20	0	20	n	0.00	0	24	0	24	n	0.00	0	53	0	53	n	0.00	0	31	0	31	n	0.00	0	26	0	26	n	ENSMUSG00000001062.19	Vps9d1	chr8	protein_coding	VPS9 domain containing 1
known_NIR_18475	chr8	123974617	123974706	-	123974538	123974706	A3SS	ENSMUST00000149490.8	known	0.21	9	33	9	33	y	0.06	2	32	2	32	y	0.18	2	9	2	9	y	0.05	1	19	1	19	n	0.16	5	27	5	27	y	0.00	0	8	0	8	n	0.16	3	16	3	16	y	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.19	5	22	5	22	y	0.24	5	16	5	16	y	0.08	3	33	3	33	y	ENSMUSG00000001062.19	Vps9d1	chr8	protein_coding	VPS9 domain containing 1
known_NIR_18476	chr8	123974810	123974893	-	123974793	123974893	A3SS	ENSMUST00000149490.8	known	0.09	4	42	4	42	y	0.12	4	29	4	29	y	0.08	1	11	1	11	n	0.06	2	34	2	34	y	0.10	4	38	4	38	y	0.00	0	7	0	7	n	0.03	1	32	1	32	n	0.00	0	14	0	14	n	0.12	2	14	2	14	y	0.00	0	33	0	33	n	0.12	2	14	2	14	y	0.07	2	28	2	28	y	ENSMUSG00000001062.19	Vps9d1	chr8	protein_coding	VPS9 domain containing 1
known_NIR_18477	chr8	123985096	123986170	+	123985128	123986170	A5SS	ENSMUST00000001092.15	known	0.38	12	20	12	20	y	0.38	17	28	17	28	y	0.59	10	7	10	7	y	0.41	11	16	11	16	y	0.49	20	21	20	21	y	0.33	3	6	3	6	n	0.33	6	12	6	12	y	0.56	9	7	9	7	y	0.50	17	17	17	17	y	0.39	17	27	17	27	y	0.63	12	7	12	7	y	0.47	16	18	16	18	y	ENSMUSG00000001065.16	Zfp276	chr8	protein_coding	zinc finger protein (C2H2 type) 276
known_NIR_18478	chr8	123992170	123994244	+	123992170	123994339	A3SS	ENSMUST00000001092.15	known	0.00	0	53	0	53	n	0.05	3	55	3	55	y	0.00	0	28	0	28	n	0.00	0	34	0	34	n	0.00	0	33	0	33	n	0.10	2	18	2	18	y	0.00	0	36	0	36	n	0.05	1	19	1	19	n	0.00	0	31	0	31	n	0.00	0	53	0	53	n	0.00	0	36	0	36	n	0.02	1	41	1	41	n	ENSMUSG00000001065.16	Zfp276	chr8	protein_coding	zinc finger protein (C2H2 type) 276
known_NIR_18479	chr8	124108300	124110064	+	124108300;124109340	124109266;124110064	ES	ENSMUST00000212571.2	known	0.02	5	207.0	5	194;220	y	0.00	0	181.0	0	171;191	n	0.00	0	363.5	0	359;368	n	0.00	1	309.0	1	296;322	n	0.01	2	328.0	2	299;357	y	0.00	0	220.5	0	216;225	n	0.01	4	275.0	4	246;304	y	0.00	0	188.0	0	178;198	n	0.00	0	211.0	0	197;225	n	0.01	4	354.0	4	338;370	y	0.02	5	221.0	5	218;224	y	0.00	1	314.5	1	304;325	n	ENSMUSG00000001472.18	Tcf25	chr8	protein_coding	transcription factor 25 (basic helix-loop-helix)
known_NIR_18480	chr8	124127436	124127797	+	124127436	124127815	A3SS	ENSMUST00000057934.10	known	0.03	6	220	6	220	y	0.03	9	272	9	272	y	0.03	11	342	11	342	y	0.03	7	236	7	236	y	0.03	10	343	10	343	y	0.03	7	196	7	196	y	0.05	16	337	16	337	y	0.02	5	203	5	203	y	0.03	6	199	6	199	y	0.03	10	359	10	359	y	0.03	11	344	11	344	y	0.02	6	300	6	300	y	ENSMUSG00000001472.18	Tcf25	chr8	protein_coding	transcription factor 25 (basic helix-loop-helix)
known_NIR_18481	chr8	124127436	124127797	+	124127436	124129886	A3SS	ENSMUST00000108840.4	known	0.20	6	24	6	24	y	0.20	9	37	9	37	y	0.26	11	32	11	32	y	0.15	7	40	7	40	y	0.20	10	39	10	39	y	0.25	7	21	7	21	y	0.29	16	40	16	40	y	0.20	5	20	5	20	y	0.21	6	23	6	23	y	0.23	10	34	10	34	y	0.28	11	29	11	29	y	0.17	6	29	6	29	y	ENSMUSG00000001472.18	Tcf25	chr8	protein_coding	transcription factor 25 (basic helix-loop-helix)
known_NIR_18482	chr8	124127436	124127797	+	124127436	124129889	A3SS	ENSMUST00000212571.2	known	0.21	6	23	6	23	y	0.20	9	36	9	36	y	0.27	11	30	11	30	y	0.19	7	30	7	30	y	0.22	10	35	10	35	y	0.23	7	23	7	23	y	0.30	16	37	16	37	y	0.19	5	21	5	21	y	0.16	6	31	6	31	y	0.24	10	32	10	32	y	0.32	11	23	11	23	y	0.16	6	32	6	32	y	ENSMUSG00000001472.18	Tcf25	chr8	protein_coding	transcription factor 25 (basic helix-loop-helix)
known_NIR_18483	chr8	124127436	124127815	+	124127436	124129886	A3SS	ENSMUST00000108840.4	known	0.90	220	24	220	24	y	0.88	272	37	272	37	y	0.91	342	32	342	32	y	0.86	236	40	236	40	y	0.90	343	39	343	39	y	0.90	196	21	196	21	y	0.89	337	40	337	40	y	0.91	203	20	203	20	y	0.90	199	23	199	23	y	0.91	359	34	359	34	y	0.92	344	29	344	29	y	0.91	300	29	300	29	y	ENSMUSG00000001472.18	Tcf25	chr8	protein_coding	transcription factor 25 (basic helix-loop-helix)
known_NIR_18484	chr8	124127436	124127815	+	124127436	124129889	A3SS	ENSMUST00000212571.2	known	0.91	220	23	220	23	y	0.88	272	36	272	36	y	0.92	342	30	342	30	y	0.89	236	30	236	30	y	0.91	343	35	343	35	y	0.89	196	23	196	23	y	0.90	337	37	337	37	y	0.91	203	21	203	21	y	0.87	199	31	199	31	y	0.92	359	32	359	32	y	0.94	344	23	344	23	y	0.90	300	32	300	32	y	ENSMUSG00000001472.18	Tcf25	chr8	protein_coding	transcription factor 25 (basic helix-loop-helix)
known_NIR_18485	chr8	124127436	124129886	+	124127436	124129889	A3SS	ENSMUST00000212571.2	known	0.51	24	23	24	23	y	0.51	37	36	37	36	y	0.52	32	30	32	30	y	0.57	40	30	40	30	y	0.53	39	35	39	35	y	0.48	21	23	21	23	y	0.52	40	37	40	37	y	0.49	20	21	20	21	y	0.43	23	31	23	31	y	0.52	34	32	34	32	y	0.56	29	23	29	23	y	0.48	29	32	29	32	y	ENSMUSG00000001472.18	Tcf25	chr8	protein_coding	transcription factor 25 (basic helix-loop-helix)
known_NIR_18486	chr8	124169790	124172862	+	124169790	124172837	A3SS	ENSMUST00000001522.10	known	0.11	1	8	1	8	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.20	1	4	1	4	n	0.16	4	21	4	21	y	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.10	1	9	1	9	n	0.00	0	9	0	9	n	0.10	1	9	1	9	n	0.00	0	5	0	5	n	0.17	1	5	1	5	n	ENSMUSG00000001482.16	Def8	chr8	protein_coding	differentially expressed in FDCP 8
known_NIR_18487	chr8	124169790;124172923	124172837;124174527	+	124169790	124174527	cassetteExon	ENSMUST00000093049.10	known	0.36	9.5	17	8;11	17	y	0.39	11.5	18	8;15	18	y	0.48	11.0	12	8;14	12	y	0.25	9.5	28	4;15	28	y	0.40	24.5	36	21;28	36	y	0.43	13.5	18	9;18	18	y	0.41	21.5	31	17;26	31	y	0.40	10.5	16	9;12	16	y	0.44	12.5	16	9;16	16	y	0.26	11.0	31	9;13	31	y	0.25	7.5	22	5;10	22	y	0.28	10.0	26	5;15	26	y	ENSMUSG00000001482.16	Def8	chr8	protein_coding	differentially expressed in FDCP 8
known_NIR_18488	chr8	124169790;124172923	124172862;124174527	+	124169790	124174527	cassetteExon	ENSMUST00000093049.10	known	0.26	6.0	17	1;11	17	n	0.29	7.5	18	0;15	18	n	0.37	7.0	12	0;14	12	n	0.22	8.0	28	1;15	28	n	0.31	16.0	36	4;28	36	y	0.33	9.0	18	0;18	18	n	0.30	13.0	31	0;26	31	n	0.29	6.5	16	1;12	16	n	0.33	8.0	16	0;16	16	n	0.18	7.0	31	1;13	31	n	0.19	5.0	22	0;10	22	n	0.24	8.0	26	1;15	26	n	ENSMUSG00000001482.16	Def8	chr8	protein_coding	differentially expressed in FDCP 8
known_NIR_18489	chr8	124169790;124174102	124174056;124174527	+	124169790	124174527	cassetteExon	ENSMUST00000093049.10	known	0.03	0.5	17	0;1	17	n	0.05	1.0	18	1;1	18	n	0.17	2.5	12	2;3	12	y	0.02	0.5	28	0;1	28	n	0.05	2.0	36	0;4	36	n	0.00	0.0	18	0;0	18	n	0.00	0.0	31	0;0	31	n	0.09	1.5	16	0;3	16	n	0.03	0.5	16	0;1	16	n	0.05	1.5	31	0;3	31	n	0.06	1.5	22	2;1	22	n	0.04	1.0	26	0;2	26	n	ENSMUSG00000001482.16	Def8	chr8	protein_coding	differentially expressed in FDCP 8
known_NIR_18490	chr8	124169790;124174102	124174056;124174527	+	124169790;124172923	124172837;124174527	MXE	ENSMUST00000001522.10	known	0.05	0.5	9.5	0;1	8;11	n	0.08	1.0	11.5	1;1	8;15	n	0.19	2.5	11.0	2;3	8;14	y	0.05	0.5	9.5	0;1	4;15	n	0.08	2.0	24.5	0;4	21;28	n	0.00	0.0	13.5	0;0	9;18	n	0.00	0.0	21.5	0;0	17;26	n	0.12	1.5	10.5	0;3	9;12	n	0.04	0.5	12.5	0;1	9;16	n	0.12	1.5	11.0	0;3	9;13	n	0.17	1.5	7.5	2;1	5;10	n	0.09	1.0	10.0	0;2	5;15	n	ENSMUSG00000001482.16	Def8	chr8	protein_coding	differentially expressed in FDCP 8
known_NIR_18491	chr8	124170184	124174527	+	124169790	124174527	A5SS	ENSMUST00000093049.10	known	0.00	0	17	0	17	n	0.10	2	18	2	18	y	0.20	3	12	3	12	y	0.15	5	28	5	28	y	0.14	6	36	6	36	y	0.33	9	18	9	18	y	0.21	8	31	8	31	y	0.47	14	16	14	16	y	0.00	0	16	0	16	n	0.06	2	31	2	31	y	0.15	4	22	4	22	y	0.13	4	26	4	26	y	ENSMUSG00000001482.16	Def8	chr8	protein_coding	differentially expressed in FDCP 8
known_NIR_18492	chr8	124170184	124174527	+	124172923	124174527	A5SS&ES	ENSMUST00000001522.10	known	0.00	0	11	0	11	n	0.12	2	15	2	15	y	0.18	3	14	3	14	y	0.25	5	15	5	15	y	0.18	6	28	6	28	y	0.33	9	18	9	18	y	0.24	8	26	8	26	y	0.54	14	12	14	12	y	0.00	0	16	0	16	n	0.13	2	13	2	13	y	0.29	4	10	4	10	y	0.21	4	15	4	15	y	ENSMUSG00000001482.16	Def8	chr8	protein_coding	differentially expressed in FDCP 8
known_NIR_18493	chr8	124170184	124174527	+	124174102	124174527	A5SS&ES	ENSMUST00000124741.8	known	0.00	0	1	0	1	n	0.67	2	1	2	1	n	0.50	3	3	3	3	n	0.83	5	1	5	1	n	0.60	6	4	6	4	y	1.00	9	0	9	0	n	1.00	8	0	8	0	n	0.82	14	3	14	3	y	0.00	0	1	0	1	n	0.40	2	3	2	3	n	0.80	4	1	4	1	n	0.67	4	2	4	2	n	ENSMUSG00000001482.16	Def8	chr8	protein_coding	differentially expressed in FDCP 8
known_NIR_18494	chr8	124172923;124174102	124174056;124174527	+	124172923	124174527	cassetteExon	ENSMUST00000001522.10	known	0.04	0.5	11	0;1	11	n	0.03	0.5	15	0;1	15	n	0.10	1.5	14	0;3	14	n	0.12	2.0	15	3;1	15	n	0.14	4.5	28	5;4	28	y	0.00	0.0	18	0;0	18	n	0.00	0.0	26	0;0	26	n	0.23	3.5	12	4;3	12	y	0.09	1.5	16	2;1	16	n	0.16	2.5	13	2;3	13	y	0.05	0.5	10	0;1	10	n	0.06	1.0	15	0;2	15	n	ENSMUSG00000001482.16	Def8	chr8	protein_coding	differentially expressed in FDCP 8
known_NIR_18495	chr8	124173892	124174527	+	124169790	124174527	A5SS	ENSMUST00000093049.10	known	0.06	1	17	1	17	n	0.14	3	18	3	18	y	0.08	1	12	1	12	n	0.00	0	28	0	28	n	0.08	3	36	3	36	y	0.14	3	18	3	18	y	0.00	0	31	0	31	n	0.00	0	16	0	16	n	0.00	0	16	0	16	n	0.00	0	31	0	31	n	0.00	0	22	0	22	n	0.00	0	26	0	26	n	ENSMUSG00000001482.16	Def8	chr8	protein_coding	differentially expressed in FDCP 8
known_NIR_18496	chr8	124173892	124174527	+	124170184	124174527	A5SS	ENSMUST00000108830.2	known	1.00	1	0	1	0	n	0.60	3	2	3	2	n	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.33	3	6	3	6	n	0.25	3	9	3	9	y	0.00	0	8	0	8	n	0.00	0	14	0	14	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	ENSMUSG00000001482.16	Def8	chr8	protein_coding	differentially expressed in FDCP 8
known_NIR_18497	chr8	124173892	124174527	+	124172923	124174527	A5SS	ENSMUST00000001522.10	known	0.08	1	11	1	11	n	0.17	3	15	3	15	y	0.07	1	14	1	14	n	0.00	0	15	0	15	n	0.10	3	28	3	28	y	0.14	3	18	3	18	y	0.00	0	26	0	26	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	ENSMUSG00000001482.16	Def8	chr8	protein_coding	differentially expressed in FDCP 8
known_NIR_18498	chr8	124207884	124212628	+	124207884;124211427	124211342;124212628	ES	ENSMUST00000001520.13	known	0.01	1	112.0	1	132;92	n	0.00	0	59.0	0	56;62	n	0.01	1	186.0	1	196;176	n	0.00	0	110.0	0	111;109	n	0.00	0	138.0	0	150;126	n	0.00	0	84.0	0	77;91	n	0.01	1	134.0	1	141;127	n	0.01	1	93.5	1	102;85	n	0.00	0	115.5	0	127;104	n	0.01	2	175.0	2	182;168	y	0.00	0	83.5	0	89;78	n	0.02	2	124.0	2	136;112	y	ENSMUSG00000031967.16	Afg3l1	chr8	protein_coding	AFG3-like AAA ATPase 1
known_NIR_18499	chr8	124225437	124227972	+	124225437;124226846	124226731;124227972	ES	ENSMUST00000001520.13	known	0.06	7	115.0	7	116;114	y	0.03	4	133.0	4	139;127	y	0.03	5	159.5	5	163;156	y	0.01	1	125.5	1	132;119	n	0.04	7	186.5	7	171;202	y	0.00	0	122.0	0	101;143	n	0.01	2	183.5	2	161;206	y	0.04	5	113.5	5	115;112	y	0.00	0	102.0	0	109;95	n	0.01	1	189.5	1	177;202	n	0.01	1	151.5	1	150;153	n	0.02	3	151.0	3	148;154	y	ENSMUSG00000031967.16	Afg3l1	chr8	protein_coding	AFG3-like AAA ATPase 1
known_NIR_18500	chr8	124555797	124557010	+	124555797	124556972	A3SS	ENSMUST00000118535.9	known	0.18	15	70	15	70	y	0.07	5	68	5	68	y	0.08	13	142	13	142	y	0.17	12	58	12	58	y	0.15	21	122	21	122	y	0.05	5	106	5	106	y	0.11	11	92	11	92	y	0.08	8	89	8	89	y	0.14	10	59	10	59	y	0.13	12	80	12	80	y	0.17	14	66	14	66	y	0.24	18	57	18	57	y	ENSMUSG00000019478.18	Rab4a	chr8	protein_coding	RAB4A, member RAS oncogene family
known_NIR_18501	chr8	124620448;124621250	124621161;124621431	-	124620448	124621431	cassetteExon	ENSMUST00000034453.6	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0.0	1	0;0	1	n	0.00	0.0	2	0;0	2	n	0.01	22.5	2631	26;19	2631	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031972.6	Acta1	chr8	protein_coding	actin, alpha 1, skeletal muscle
known_NIR_18502	chr8	124736572	124747928	-	124736572	124747600	5pMXE	ENSMUST00000093039.6	known	0.47	8	9	8	9	y	0.56	5	4	5	4	n	0.92	22	2	22	2	y	0.73	8	3	8	3	y	0.48	15	16	15	16	y	0.69	9	4	9	4	y	0.78	18	5	18	5	y	0.86	12	2	12	2	y	0.86	6	1	6	1	n	0.77	23	7	23	7	y	0.82	9	2	9	2	y	0.68	15	7	15	7	y	ENSMUSG00000038697.16	Taf5l	chr8	protein_coding	TATA-box binding protein associated factor 5 like
known_NIR_18503	chr8	124761927	124763375	+	124761914	124763375	A5SS	ENSMUST00000173168.8	known	1.00	14	0	14	0	n	1.00	11	0	11	0	n	1.00	22	0	22	0	n	1.00	11	0	11	0	n	0.89	24	3	24	3	y	1.00	11	0	11	0	n	0.85	17	3	17	3	y	1.00	15	0	15	0	n	1.00	11	0	11	0	n	0.86	12	2	12	2	y	0.90	9	1	9	1	n	0.90	18	2	18	2	y	ENSMUSG00000031976.15	Urb2	chr8	protein_coding	URB2 ribosome biogenesis 2 homolog (S. cerevisiae)
known_NIR_18504	chr8	125247690	125252408	+	125247690	125252370	A3SS	ENSMUST00000034460.11	known	0.00	0	28	0	28	n	0.00	0	15	0	15	n	0.00	0	30	0	30	n	0.00	0	27	0	27	n	0.07	4	51	4	51	y	0.00	0	17	0	17	n	0.07	2	27	2	27	y	0.00	0	21	0	21	n	0.00	0	26	0	26	n	0.04	2	53	2	53	y	0.00	0	17	0	17	n	0.00	0	35	0	35	n	ENSMUSG00000031979.18	Cog2	chr8	protein_coding	component of oligomeric golgi complex 2
known_NIR_18505	chr8	125403186	125405741	-	125403189	125405741	A3SS	ENSMUST00000117624.9	known	0.26	10	29	10	29	y	0.14	5	31	5	31	y	0.19	10	43	10	43	y	0.38	16	26	16	26	y	0.27	20	54	20	54	y	0.32	12	26	12	26	y	0.21	14	52	14	52	y	0.21	8	30	8	30	y	0.22	8	28	8	28	y	0.25	14	42	14	42	y	0.17	5	24	5	24	y	0.19	8	34	8	34	y	ENSMUSG00000037300.20	Ttc13	chr8	protein_coding	tetratricopeptide repeat domain 13
known_NIR_18506	chr8	125417098	125421569	-	125417098	125436642	A5SS	ENSMUST00000231984.2	known	0.86	31	5	31	5	y	0.84	21	4	21	4	y	0.94	45	3	45	3	y	0.87	33	5	33	5	y	0.83	40	8	40	8	y	0.80	16	4	16	4	y	0.90	43	5	43	5	y	0.89	32	4	32	4	y	0.79	15	4	15	4	y	0.86	32	5	32	5	y	0.96	22	1	22	1	n	1.00	20	0	20	0	n	ENSMUSG00000037300.20	Ttc13	chr8	protein_coding	tetratricopeptide repeat domain 13
known_NIR_18507	chr8	125422491	125424733	-	125422491	125436642	A5SS	ENSMUST00000118134.3	known	0.59	13	9	13	9	y	0.57	8	6	8	6	y	0.61	17	11	17	11	y	0.25	6	18	6	18	y	0.42	24	33	24	33	y	0.75	18	6	18	6	y	0.72	21	8	21	8	y	0.18	4	18	4	18	y	0.57	12	9	12	9	y	0.59	23	16	23	16	y	0.48	13	14	13	14	y	0.62	10	6	10	6	y	ENSMUSG00000037300.20	Ttc13	chr8	protein_coding	tetratricopeptide repeat domain 13
known_NIR_18508	chr8	125422491	125426395	-	125422491;125424825	125424733;125426395	ES	ENSMUST00000214828.2	known	0.00	0	10.5	0	13;8	n	0.00	0	10.5	0	8;13	n	0.00	0	21.0	0	17;25	n	0.09	1	10.0	1	6;14	n	0.03	1	28.0	1	24;32	n	0.06	1	16.5	1	18;15	n	0.05	1	19.5	1	21;18	n	0.00	0	10.5	0	4;17	n	0.17	3	14.5	3	12;17	y	0.11	3	24.0	3	23;25	y	0.06	1	15.5	1	13;18	n	0.06	1	15.5	1	10;21	n	ENSMUSG00000037300.20	Ttc13	chr8	protein_coding	tetratricopeptide repeat domain 13
known_NIR_18509	chr8	125422491	125436642	-	125417098	125436642	A3SS	ENSMUST00000231984.2	known	0.64	9	5	9	5	y	0.60	6	4	6	4	y	0.79	11	3	11	3	y	0.78	18	5	18	5	y	0.80	33	8	33	8	y	0.60	6	4	6	4	y	0.62	8	5	8	5	y	0.82	18	4	18	4	y	0.69	9	4	9	4	y	0.76	16	5	16	5	y	0.93	14	1	14	1	n	1.00	6	0	6	0	n	ENSMUSG00000037300.20	Ttc13	chr8	protein_coding	tetratricopeptide repeat domain 13
known_NIR_18510	chr8	125422491	125436642	-	125426460	125436642	A3SS&ES	ENSMUST00000117624.9	known	0.47	9	10	9	10	y	0.43	6	8	6	8	y	0.32	11	23	11	23	y	0.51	18	17	18	17	y	0.60	33	22	33	22	y	0.75	6	2	6	2	n	0.40	8	12	8	12	y	0.53	18	16	18	16	y	0.39	9	14	9	14	y	0.50	16	16	16	16	y	0.48	14	15	14	15	y	0.24	6	19	6	19	y	ENSMUSG00000037300.20	Ttc13	chr8	protein_coding	tetratricopeptide repeat domain 13
known_NIR_18511	chr8	125422491;125426460	125426395;125436642	-	125422491	125436642	cassetteExon	ENSMUST00000118134.3	known	0.36	5.0	9	0;10	9	n	0.40	4.0	6	0;8	6	n	0.51	11.5	11	0;23	11	n	0.33	9.0	18	1;17	18	n	0.26	11.5	33	1;22	33	n	0.20	1.5	6	1;2	6	n	0.45	6.5	8	1;12	8	n	0.31	8.0	18	0;16	18	n	0.49	8.5	9	3;14	9	y	0.37	9.5	16	3;16	16	y	0.36	8.0	14	1;15	14	n	0.62	10.0	6	1;19	6	n	ENSMUSG00000037300.20	Ttc13	chr8	protein_coding	tetratricopeptide repeat domain 13
known_NIR_18512	chr8	125452114	125455108	+	125452114	125455068	A3SS	ENSMUST00000034463.4	known	0.44	4	5	4	5	n	0.25	2	6	2	6	n	0.22	2	7	2	7	n	0.33	2	4	2	4	n	0.12	2	14	2	14	y	0.11	1	8	1	8	n	0.18	2	9	2	9	y	0.25	1	3	1	3	n	0.00	0	10	0	10	n	0.08	1	11	1	11	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	ENSMUSG00000031982.6	Arv1	chr8	protein_coding	ARV1 homolog, fatty acid homeostasis modulator
known_NIR_18513	chr8	125455221	125457578	+	125455221	125457531	A3SS	ENSMUST00000034463.4	known	0.25	3	9	3	9	y	1.00	3	0	3	0	n	0.22	2	7	2	7	n	0.50	4	4	4	4	n	0.38	6	10	6	10	y	0.33	2	4	2	4	n	0.67	6	3	6	3	n	0.44	4	5	4	5	n	0.00	0	3	0	3	n	0.43	3	4	3	4	n	0.20	1	4	1	4	n	0.67	4	2	4	2	n	ENSMUSG00000031982.6	Arv1	chr8	protein_coding	ARV1 homolog, fatty acid homeostasis modulator
known_NIR_18514	chr8	125600218	125600958	+	125600248	125600958	A5SS	ENSMUST00000034466.10	known	0.05	3	55	3	55	y	0.05	2	38	2	38	y	0.11	8	68	8	68	y	0.07	6	82	6	82	y	0.01	1	100	1	100	n	0.04	2	45	2	45	y	0.06	5	85	5	85	y	0.10	4	38	4	38	y	0.00	0	55	0	55	n	0.04	4	86	4	86	y	0.03	2	65	2	65	y	0.01	1	67	1	67	n	ENSMUSG00000031985.10	Gnpat	chr8	protein_coding	glyceronephosphate O-acyltransferase
known_NIR_18515	chr8	125628878	125629430	+	125628631	125629430	A5SS	ENSMUST00000034467.7	known	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	20	0	20	n	0.00	0	16	0	16	n	0.05	1	19	1	19	n	0.00	0	6	0	6	n	0.18	2	9	2	9	y	0.07	1	13	1	13	n	0.22	2	7	2	7	n	0.00	0	23	0	23	n	0.00	0	3	0	3	n	0.00	0	17	0	17	n	ENSMUSG00000031986.7	Sprtn	chr8	protein_coding	SprT-like N-terminal domain
known_NIR_18516	chr8	126456801	126462807	+	126456801;126459970	126459845;126462807	ES	ENSMUST00000146055.8	known	0.00	0	5.0	0	4;6	n	0.00	0	4.5	0	2;7	n	0.25	2	6.0	2	6;6	y	0.00	0	1.0	0	0;2	n	0.00	0	8.0	0	8;8	n	0.00	0	2.0	0	2;2	n	0.21	2	7.5	2	11;4	y	0.00	0	4.5	0	4;5	n	0.00	0	3.0	0	3;3	n	0.00	0	0.5	0	1;0	n	0.00	0	1.5	0	3;0	n	0.00	0	2.0	0	4;0	n	ENSMUSG00000031851.15	Ntpcr	chr8	protein_coding	nucleoside-triphosphatase, cancer-related
known_NIR_18517	chr8	126461088	126462807	+	126456801	126462807	A5SS	ENSMUST00000143504.8	known	1.00	38	0	38	0	n	1.00	31	0	31	0	n	0.88	14	2	14	2	y	1.00	21	0	21	0	n	1.00	26	0	26	0	n	1.00	12	0	12	0	n	0.95	35	2	35	2	y	1.00	15	0	15	0	n	1.00	32	0	32	0	n	1.00	35	0	35	0	n	1.00	40	0	40	0	n	1.00	21	0	21	0	n	ENSMUSG00000031851.15	Ntpcr	chr8	protein_coding	nucleoside-triphosphatase, cancer-related
known_NIR_18518	chr8	126461088	126462807	+	126459970	126462807	A5SS	ENSMUST00000146055.8	known	0.86	38	6	38	6	y	0.82	31	7	31	7	y	0.70	14	6	14	6	y	0.91	21	2	21	2	y	0.76	26	8	26	8	y	0.86	12	2	12	2	y	0.90	35	4	35	4	y	0.75	15	5	15	5	y	0.91	32	3	32	3	y	1.00	35	0	35	0	n	1.00	40	0	40	0	n	1.00	21	0	21	0	n	ENSMUSG00000031851.15	Ntpcr	chr8	protein_coding	nucleoside-triphosphatase, cancer-related
known_NIR_18519	chr8	126462969	126471975	+	126462969	126464062	A3SS&ES	ENSMUST00000138656.2	known	0.05	2	39	2	39	y	0.00	0	27	0	27	n	0.00	0	23	0	23	n	0.00	0	32	0	32	n	0.00	0	35	0	35	n	0.00	0	21	0	21	n	0.03	1	31	1	31	n	0.00	0	25	0	25	n	0.08	2	22	2	22	y	0.06	2	32	2	32	y	0.00	0	36	0	36	n	0.00	0	20	0	20	n	ENSMUSG00000031851.15	Ntpcr	chr8	protein_coding	nucleoside-triphosphatase, cancer-related
known_NIR_18520	chr8	126462969	126471975	+	126462969;126464158	126464062;126471975	ES	ENSMUST00000146055.8	known	0.05	2	39.5	2	39;40	y	0.00	0	30.0	0	27;33	n	0.00	0	24.0	0	23;25	n	0.00	0	27.5	0	32;23	n	0.00	0	40.0	0	35;45	n	0.00	0	18.0	0	21;15	n	0.02	1	41.0	1	31;51	n	0.00	0	23.5	0	25;22	n	0.08	2	24.5	2	22;27	y	0.05	2	40.0	2	32;48	y	0.00	0	36.5	0	36;37	n	0.00	0	22.0	0	20;24	n	ENSMUSG00000031851.15	Ntpcr	chr8	protein_coding	nucleoside-triphosphatase, cancer-related
known_NIR_18521	chr8	126464158	126464794	+	126464158	126471975	A3SS	ENSMUST00000146055.8	known	0.15	7	40	7	40	y	0.08	3	33	3	33	y	0.22	7	25	7	25	y	0.28	9	23	9	23	y	0.27	17	45	17	45	y	0.17	3	15	3	15	y	0.14	8	51	8	51	y	0.31	10	22	10	22	y	0.27	10	27	10	27	y	0.13	7	48	7	48	y	0.14	6	37	6	37	y	0.14	4	24	4	24	y	ENSMUSG00000031851.15	Ntpcr	chr8	protein_coding	nucleoside-triphosphatase, cancer-related
known_NIR_18522	chr8	126464158	126471979	+	126464158	126464794	3pMXE	ENSMUST00000151172.8	known	0.22	2	7	2	7	n	0.57	4	3	4	3	n	0.12	1	7	1	7	n	0.10	1	9	1	9	n	0.11	2	17	2	17	y	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.09	1	10	1	10	n	0.12	1	7	1	7	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	ENSMUSG00000031851.15	Ntpcr	chr8	protein_coding	nucleoside-triphosphatase, cancer-related
known_NIR_18523	chr8	126464158	126471979	+	126464158	126471975	A3SS	ENSMUST00000146055.8	known	0.05	2	40	2	40	y	0.11	4	33	4	33	y	0.04	1	25	1	25	n	0.04	1	23	1	23	n	0.04	2	45	2	45	y	0.00	0	15	0	15	n	0.00	0	51	0	51	n	0.00	0	22	0	22	n	0.04	1	27	1	27	n	0.02	1	48	1	48	n	0.00	0	37	0	37	n	0.00	0	24	0	24	n	ENSMUSG00000031851.15	Ntpcr	chr8	protein_coding	nucleoside-triphosphatase, cancer-related
known_NIR_18524	chr8	12698787	12700154	-	12699822	12700154	A3SS	ENSMUST00000164971.8	known	0.30	3	7	3	7	y	0.00	0	4	0	4	n	0.14	3	19	3	19	y	0.08	1	12	1	12	n	0.08	1	12	1	12	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.04	1	22	1	22	n	0.10	3	28	3	28	y	0.00	0	18	0	18	n	0.00	0	15	0	15	n	ENSMUSG00000000759.15	Tubgcp3	chr8	protein_coding	tubulin, gamma complex associated protein 3
known_NIR_18525	chr8	12698787;12699822	12699690;12700154	-	12698787	12700154	cassetteExon	ENSMUST00000164774.8	known	0.73	8.0	3	9;7	3	y	1.00	7.0	0	10;4	0	n	0.82	13.5	3	8;19	3	y	0.90	9.0	1	6;12	1	n	0.92	11.5	1	11;12	1	n	1.00	10.5	0	13;8	0	n	1.00	15.0	0	16;14	0	n	1.00	7.5	0	8;7	0	n	0.93	13.5	1	5;22	1	n	0.86	19.0	3	10;28	3	y	1.00	15.5	0	13;18	0	n	1.00	10.5	0	6;15	0	n	ENSMUSG00000000759.15	Tubgcp3	chr8	protein_coding	tubulin, gamma complex associated protein 3
known_NIR_18526	chr8	12705974	12707446	-	12705978	12707446	A3SS	ENSMUST00000164774.8	known	0.00	0	8	0	8	n	0.25	2	6	2	6	n	0.00	0	15	0	15	n	0.14	1	6	1	6	n	0.15	3	17	3	17	y	0.00	0	4	0	4	n	0.09	2	20	2	20	y	0.00	0	8	0	8	n	0.17	2	10	2	10	y	0.00	0	15	0	15	n	0.10	1	9	1	9	n	0.08	1	11	1	11	n	ENSMUSG00000000759.15	Tubgcp3	chr8	protein_coding	tubulin, gamma complex associated protein 3
known_NIR_18527	chr8	127663932	127666622	-	127663932	127672354	A5SS	ENSMUST00000212771.2	known	1.00	296	0	296	0	n	0.99	220	3	220	3	y	1.00	414	2	414	2	y	1.00	246	0	246	0	n	0.99	344	2	344	2	y	1.00	186	0	186	0	n	1.00	356	0	356	0	n	0.98	178	3	178	3	y	0.99	200	2	200	2	y	1.00	298	0	298	0	n	1.00	251	1	251	1	n	1.00	300	0	300	0	n	ENSMUSG00000093904.3	Tomm20	chr8	protein_coding	translocase of outer mitochondrial membrane 20
known_NIR_18528	chr8	127667975	127672354	-	127663932	127672354	A3SS	ENSMUST00000212771.2	known	1.00	219	0	219	0	n	0.99	222	3	222	3	y	0.99	337	2	337	2	y	1.00	258	0	258	0	n	0.99	312	2	312	2	y	1.00	173	0	173	0	n	1.00	355	0	355	0	n	0.98	158	3	158	3	y	0.99	207	2	207	2	y	1.00	339	0	339	0	n	1.00	239	1	239	1	n	1.00	242	0	242	0	n	ENSMUSG00000093904.3	Tomm20	chr8	protein_coding	translocase of outer mitochondrial membrane 20
known_NIR_18529	chr8	127686335	127692132	-	127686335;127688721	127688662;127692132	ES	ENSMUST00000045994.8	known	0.71	17	7.0	17	6;8	y	0.55	11	9.0	11	12;6	y	0.39	13	20.0	13	21;19	y	0.47	12	13.5	12	12;15	y	0.29	5	12.5	5	15;10	y	0.29	5	12.5	5	13;12	y	0.49	12	12.5	12	13;12	y	0.42	4	5.5	4	7;4	y	0.79	13	3.5	13	1;6	n	0.55	19	15.5	19	16;15	y	0.47	9	10.0	9	10;10	y	0.48	16	17.5	16	18;17	y	ENSMUSG00000033931.10	Rbm34	chr8	protein_coding	RNA binding motif protein 34
known_NIR_18530	chr8	127898496	128003502	+	127888061	128003502	A5SS	ENSMUST00000162309.8	known	0.00	0	50	0	50	n	0.00	0	30	0	30	n	0.00	0	57	0	57	n	0.01	1	76	1	76	n	0.00	0	95	0	95	n	0.00	0	23	0	23	n	0.03	3	83	3	83	y	0.00	0	33	0	33	n	0.00	0	65	0	65	n	0.00	0	97	0	97	n	0.00	0	77	0	77	n	0.00	0	98	0	98	n	ENSMUSG00000025812.19	Pard3	chr8	protein_coding	par-3 family cell polarity regulator
known_NIR_18531	chr8	128032989	128083756	+	128032989;128050653	128050522;128083756	ES	ENSMUST00000162309.8	known	0.00	0	44.5	0	38;51	n	0.00	0	43.0	0	38;48	n	0.00	0	52.5	0	45;60	n	0.00	0	86.5	0	81;92	n	0.02	2	97.5	2	94;101	y	0.00	0	31.5	0	30;33	n	0.00	0	75.0	0	66;84	n	0.00	0	43.5	0	46;41	n	0.00	0	50.5	0	43;58	n	0.00	0	108.5	0	100;117	n	0.00	0	52.0	0	45;59	n	0.00	0	112.0	0	103;121	n	ENSMUSG00000025812.19	Pard3	chr8	protein_coding	par-3 family cell polarity regulator
known_NIR_18532	chr8	128083847	128096729	+	128083847	128086208	3pMXE	ENSMUST00000162035.2	known	0.00	0	67	0	67	n	0.00	0	39	0	39	n	0.00	0	36	0	36	n	0.01	1	107	1	107	n	0.00	0	91	0	91	n	0.00	0	31	0	31	n	0.00	0	87	0	87	n	0.00	0	45	0	45	n	0.00	0	60	0	60	n	0.01	1	91	1	91	n	0.04	2	52	2	52	y	0.03	3	105	3	105	y	ENSMUSG00000025812.19	Pard3	chr8	protein_coding	par-3 family cell polarity regulator
known_NIR_18533	chr8	128083847	128096729	+	128083847;128086291	128086208;128096729	ES	ENSMUST00000162309.8	known	0.00	0	74.5	0	67;82	n	0.00	0	43.5	0	39;48	n	0.00	0	47.5	0	36;59	n	0.01	1	116.5	1	107;126	n	0.00	0	108.5	0	91;126	n	0.00	0	30.0	0	31;29	n	0.00	0	105.5	0	87;124	n	0.00	0	49.0	0	45;53	n	0.00	0	66.5	0	60;73	n	0.01	1	118.0	1	91;145	n	0.03	2	63.5	2	52;75	y	0.03	3	109.0	3	105;113	y	ENSMUSG00000025812.19	Pard3	chr8	protein_coding	par-3 family cell polarity regulator
known_NIR_18534	chr8	128125231	128126879	+	128125231	128131856	A3SS	ENSMUST00000162309.8	known	0.17	10	48	10	48	y	0.34	15	29	15	29	y	0.27	13	35	13	35	y	0.25	13	39	13	39	y	0.27	22	59	22	59	y	0.40	10	15	10	15	y	0.34	21	41	21	41	y	0.23	7	23	7	23	y	0.35	17	31	17	31	y	0.19	15	62	15	62	y	0.30	15	35	15	35	y	0.26	25	72	25	72	y	ENSMUSG00000025812.19	Pard3	chr8	protein_coding	par-3 family cell polarity regulator
known_NIR_18535	chr8	128125240	128126879	+	128125231	128126879	A5SS	ENSMUST00000162907.8	known	0.09	1	10	1	10	n	0.06	1	15	1	15	n	0.41	9	13	9	13	y	0.28	5	13	5	13	y	0.19	5	22	5	22	y	0.17	2	10	2	10	y	0.28	8	21	8	21	y	0.42	5	7	5	7	y	0.26	6	17	6	17	y	0.35	8	15	8	15	y	0.06	1	15	1	15	n	0.11	3	25	3	25	y	ENSMUSG00000025812.19	Pard3	chr8	protein_coding	par-3 family cell polarity regulator
known_NIR_18536	chr8	128125240	128126879	+	128125240	128131856	A3SS	ENSMUST00000162602.8	known	0.06	1	16	1	16	n	0.04	1	26	1	26	n	0.38	9	15	9	15	y	0.19	5	21	5	21	y	0.17	5	24	5	24	y	0.17	2	10	2	10	y	0.21	8	31	8	31	y	0.28	5	13	5	13	y	0.24	6	19	6	19	y	0.20	8	32	8	32	y	0.05	1	20	1	20	n	0.13	3	20	3	20	y	ENSMUSG00000025812.19	Pard3	chr8	protein_coding	par-3 family cell polarity regulator
known_NIR_18537	chr8	128125240	128131856	+	128125231	128131856	A5SS	ENSMUST00000162309.8	known	0.25	16	48	16	48	y	0.47	26	29	26	29	y	0.30	15	35	15	35	y	0.35	21	39	21	39	y	0.29	24	59	24	59	y	0.40	10	15	10	15	y	0.43	31	41	31	41	y	0.36	13	23	13	23	y	0.38	19	31	19	31	y	0.34	32	62	32	62	y	0.36	20	35	20	35	y	0.22	20	72	20	72	y	ENSMUSG00000025812.19	Pard3	chr8	protein_coding	par-3 family cell polarity regulator
known_NIR_18538	chr8	128136098	128137210	+	128136185	128137210	A5SS	ENSMUST00000162309.8	known	0.88	37	5	37	5	y	0.87	34	5	34	5	y	0.90	28	3	28	3	y	0.85	41	7	41	7	y	0.91	53	5	53	5	y	0.91	20	2	20	2	y	0.89	34	4	34	4	y	1.00	21	0	21	0	n	0.86	30	5	30	5	y	0.86	65	11	65	11	y	0.98	49	1	49	1	n	0.88	35	5	35	5	y	ENSMUSG00000025812.19	Pard3	chr8	protein_coding	par-3 family cell polarity regulator
known_NIR_18539	chr8	128136098	128137210	+	128136188	128137210	A5SS	ENSMUST00000079777.12	known	0.57	37	28	37	28	y	0.52	34	31	34	31	y	0.62	28	17	28	17	y	0.49	41	43	41	43	y	0.57	53	40	53	40	y	0.48	20	22	20	22	y	0.55	34	28	34	28	y	0.58	21	15	21	15	y	0.48	30	32	30	32	y	0.64	65	36	65	36	y	0.59	49	34	49	34	y	0.41	35	50	35	50	y	ENSMUSG00000025812.19	Pard3	chr8	protein_coding	par-3 family cell polarity regulator
known_NIR_18540	chr8	128136188	128137210	+	128136185	128137210	A5SS	ENSMUST00000162309.8	known	0.85	28	5	28	5	y	0.86	31	5	31	5	y	0.85	17	3	17	3	y	0.86	43	7	43	7	y	0.89	40	5	40	5	y	0.92	22	2	22	2	y	0.88	28	4	28	4	y	1.00	15	0	15	0	n	0.86	32	5	32	5	y	0.77	36	11	36	11	y	0.97	34	1	34	1	n	0.91	50	5	50	5	y	ENSMUSG00000025812.19	Pard3	chr8	protein_coding	par-3 family cell polarity regulator
known_NIR_18541	chr8	128136188	128142051	+	128136188;128137254	128137210;128142051	ES	ENSMUST00000079777.12	known	0.04	2	52.0	2	28;76	y	0.04	2	45.5	2	31;60	y	0.14	6	35.5	6	17;54	y	0.03	2	68.0	2	43;93	y	0.06	4	65.0	4	40;90	y	0.03	1	32.5	1	22;43	n	0.00	0	49.5	0	28;71	n	0.12	4	29.5	4	15;44	y	0.00	0	55.5	0	32;79	n	0.03	2	65.0	2	36;94	y	0.06	4	68.0	4	34;102	y	0.08	6	70.0	6	50;90	y	ENSMUSG00000025812.19	Pard3	chr8	protein_coding	par-3 family cell polarity regulator
known_NIR_18542	chr8	128136188	128142051	+	128137254	128142051	A5SS&ES	ENSMUST00000162309.8	known	0.03	2	76	2	76	y	0.03	2	60	2	60	y	0.10	6	54	6	54	y	0.02	2	93	2	93	y	0.04	4	90	4	90	y	0.02	1	43	1	43	n	0.00	0	71	0	71	n	0.08	4	44	4	44	y	0.00	0	79	0	79	n	0.02	2	94	2	94	y	0.04	4	102	4	102	y	0.06	6	90	6	90	y	ENSMUSG00000025812.19	Pard3	chr8	protein_coding	par-3 family cell polarity regulator
known_NIR_18543	chr8	128153234	128159276	+	128153234	128186755	A3SS	ENSMUST00000162309.8	known	0.80	97	25	97	25	y	0.88	141	19	141	19	y	0.62	51	31	51	31	y	0.90	114	12	114	12	y	0.76	105	34	105	34	y	0.80	41	10	41	10	y	0.85	139	24	139	24	y	0.82	40	9	40	9	y	0.91	95	9	95	9	y	0.94	135	9	135	9	y	0.95	130	7	130	7	y	0.80	106	26	106	26	y	ENSMUSG00000025812.19	Pard3	chr8	protein_coding	par-3 family cell polarity regulator
known_NIR_18544	chr8	128174287	128186755	+	128153234	128186755	A5SS	ENSMUST00000162309.8	known	0.04	1	25	1	25	n	0.21	5	19	5	19	y	0.00	0	31	0	31	n	0.25	4	12	4	12	y	0.06	2	34	2	34	y	0.00	0	10	0	10	n	0.08	2	24	2	24	y	0.00	0	9	0	9	n	0.18	2	9	2	9	y	0.25	3	9	3	9	y	0.30	3	7	3	7	y	0.07	2	26	2	26	y	ENSMUSG00000025812.19	Pard3	chr8	protein_coding	par-3 family cell polarity regulator
known_NIR_18545	chr8	12901172	12901633	+	12901172	12906934	A3SS	ENSMUST00000033818.10	known	0.15	7	40	7	40	y	0.04	2	45	2	45	y	0.04	3	80	3	80	y	0.08	3	36	3	36	y	0.02	2	89	2	89	y	0.06	2	30	2	30	y	0.05	2	40	2	40	y	0.02	1	41	1	41	n	0.07	2	28	2	28	y	0.08	3	36	3	36	y	0.37	7	12	7	12	y	0.00	0	43	0	43	n	ENSMUSG00000031441.16	Atp11a	chr8	protein_coding	ATPase, class VI, type 11A
known_NIR_18546	chr8	12909479	12911912	+	12909479	12911640	A3SS&ES	ENSMUST00000132974.8	known	0.52	11	10	11	10	y	0.60	24	16	24	16	y	0.62	39	24	39	24	y	0.27	4	11	4	11	y	0.53	24	21	24	21	y	0.61	11	7	11	7	y	0.52	14	13	14	13	y	0.79	15	4	15	4	y	0.64	7	4	7	4	y	0.26	5	14	5	14	y	0.75	12	4	12	4	y	0.54	14	12	14	12	y	ENSMUSG00000031441.16	Atp11a	chr8	protein_coding	ATPase, class VI, type 11A
known_NIR_18547	chr8	12909479	12911912	+	12909479	12913759	A3SS	ENSMUST00000033818.10	known	0.37	11	19	11	19	y	0.65	24	13	24	13	y	0.61	39	25	39	25	y	0.16	4	21	4	21	y	0.48	24	26	24	26	y	0.69	11	5	11	5	y	0.39	14	22	14	22	y	0.45	15	18	15	18	y	0.47	7	8	7	8	y	0.31	5	11	5	11	y	0.71	12	5	12	5	y	0.48	14	15	14	15	y	ENSMUSG00000031441.16	Atp11a	chr8	protein_coding	ATPase, class VI, type 11A
known_NIR_18548	chr8	12909479	12911912	+	12909479	12914920	A3SS	ENSMUST00000091237.12	known	1.00	11	0	11	0	n	0.92	24	2	24	2	y	1.00	39	0	39	0	n	0.80	4	1	4	1	n	1.00	24	0	24	0	n	1.00	11	0	11	0	n	1.00	14	0	14	0	n	1.00	15	0	15	0	n	1.00	7	0	7	0	n	1.00	5	0	5	0	n	1.00	12	0	12	0	n	1.00	14	0	14	0	n	ENSMUSG00000031441.16	Atp11a	chr8	protein_coding	ATPase, class VI, type 11A
known_NIR_18549	chr8	12909479	12914920	+	12909479;12913862	12913759;12914920	ES	ENSMUST00000033818.10	known	0.00	0	13.0	0	19;7	n	0.13	2	13.5	2	13;14	y	0.00	0	20.5	0	25;16	n	0.06	1	16.5	1	21;12	n	0.00	0	28.5	0	26;31	n	0.00	0	6.0	0	5;7	n	0.00	0	21.5	0	22;21	n	0.00	0	20.5	0	18;23	n	0.00	0	9.5	0	8;11	n	0.00	0	9.5	0	11;8	n	0.00	0	4.0	0	5;3	n	0.00	0	16.5	0	15;18	n	ENSMUSG00000031441.16	Atp11a	chr8	protein_coding	ATPase, class VI, type 11A
known_NIR_18550	chr8	12909479	12914920	+	12911724	12914920	5pMXE	ENSMUST00000139545.2	known	0.00	0	9	0	9	n	0.14	2	12	2	12	y	0.00	0	20	0	20	n	0.08	1	12	1	12	n	0.00	0	22	0	22	n	0.00	0	7	0	7	n	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	13	0	13	n	ENSMUSG00000031441.16	Atp11a	chr8	protein_coding	ATPase, class VI, type 11A
known_NIR_18551	chr8	12909479;12911724	12911640;12911912	+	12909479	12911912	cassetteExon	ENSMUST00000143359.8	known	0.31	5.0	11	10;0	11	n	0.25	8.0	24	16;0	24	n	0.26	14.0	39	24;4	39	y	0.62	6.5	4	11;2	4	y	0.34	12.5	24	21;4	24	y	0.27	4.0	11	7;1	11	n	0.33	7.0	14	13;1	14	n	0.12	2.0	15	4;0	15	n	0.22	2.0	7	4;0	7	n	0.60	7.5	5	14;1	5	n	0.14	2.0	12	4;0	12	n	0.30	6.0	14	12;0	14	n	ENSMUSG00000031441.16	Atp11a	chr8	protein_coding	ATPase, class VI, type 11A
known_NIR_18552	chr8	12909479;12911724	12911640;12914920	+	12909479	12914920	cassetteExon	ENSMUST00000091237.12	known	1.00	9.5	0	10;9	0	n	0.88	14.0	2	16;12	2	y	1.00	22.0	0	24;20	0	n	0.92	11.5	1	11;12	1	n	1.00	21.5	0	21;22	0	n	1.00	7.0	0	7;7	0	n	1.00	14.5	0	13;16	0	n	1.00	7.5	0	4;11	0	n	1.00	4.0	0	4;4	0	n	1.00	9.0	0	14;4	0	n	1.00	3.5	0	4;3	0	n	1.00	12.5	0	12;13	0	n	ENSMUSG00000031441.16	Atp11a	chr8	protein_coding	ATPase, class VI, type 11A
known_NIR_18553	chr8	12909479;12911724	12911640;12914920	+	12909479;12913862	12913759;12914920	MXE	ENSMUST00000033818.10	known	0.42	9.5	13.0	10;9	19;7	y	0.51	14.0	13.5	16;12	13;14	y	0.52	22.0	20.5	24;20	25;16	y	0.41	11.5	16.5	11;12	21;12	y	0.43	21.5	28.5	21;22	26;31	y	0.54	7.0	6.0	7;7	5;7	y	0.40	14.5	21.5	13;16	22;21	y	0.27	7.5	20.5	4;11	18;23	y	0.30	4.0	9.5	4;4	8;11	y	0.49	9.0	9.5	14;4	11;8	y	0.47	3.5	4.0	4;3	5;3	y	0.43	12.5	16.5	12;13	15;18	y	ENSMUSG00000031441.16	Atp11a	chr8	protein_coding	ATPase, class VI, type 11A
known_NIR_18554	chr8	12911724	12911912	+	12911724	12914920	A3SS	ENSMUST00000132974.8	known	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.17	4	20	4	20	y	0.14	2	12	2	12	y	0.15	4	22	4	22	y	0.12	1	7	1	7	n	0.06	1	16	1	16	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.00	0	13	0	13	n	ENSMUSG00000031441.16	Atp11a	chr8	protein_coding	ATPase, class VI, type 11A
known_NIR_18555	chr8	12913862	12914920	+	12911724	12914920	A5SS	ENSMUST00000139545.2	known	0.44	7	9	7	9	y	0.54	14	12	14	12	y	0.44	16	20	16	20	y	0.50	12	12	12	12	y	0.58	31	22	31	22	y	0.50	7	7	7	7	y	0.57	21	16	21	16	y	0.68	23	11	23	11	y	0.73	11	4	11	4	y	0.67	8	4	8	4	y	0.50	3	3	3	3	n	0.58	18	13	18	13	y	ENSMUSG00000031441.16	Atp11a	chr8	protein_coding	ATPase, class VI, type 11A
known_NIR_18556	chr8	129433640	129439689	+	129433640	129436734	3pMXE	ENSMUST00000135281.2	known	0.01	1	115	1	115	n	0.00	0	74	0	74	n	0.01	1	177	1	177	n	0.01	2	150	2	150	y	0.01	2	224	2	224	y	0.03	3	84	3	84	y	0.01	2	142	2	142	y	0.01	1	142	1	142	n	0.01	1	120	1	120	n	0.01	1	198	1	198	n	0.00	0	74	0	74	n	0.01	2	187	2	187	y	ENSMUSG00000025809.16	Itgb1	chr8	protein_coding	integrin beta 1 (fibronectin receptor beta)
known_NIR_18557	chr8	129433640	129439689	+	129433640;129436956	129436734;129439689	ES	ENSMUST00000090006.12	known	0.01	1	103.5	1	115;92	n	0.00	0	73.0	0	74;72	n	0.01	1	186.0	1	177;195	n	0.01	2	158.5	2	150;167	y	0.01	2	218.5	2	224;213	y	0.03	3	88.0	3	84;92	y	0.01	2	155.0	2	142;168	y	0.01	1	131.0	1	142;120	n	0.01	1	110.0	1	120;100	n	0.01	1	194.5	1	198;191	n	0.00	0	85.0	0	74;96	n	0.01	2	183.5	2	187;180	y	ENSMUSG00000025809.16	Itgb1	chr8	protein_coding	integrin beta 1 (fibronectin receptor beta)
known_NIR_18558	chr8	129452667;129453544	129453464;129458504	+	129452667	129458504	cassetteExon	ENSMUST00000090006.12	known	0.00	0.5	301	1;0	301	n	0.00	0.0	326	0;0	326	n	0.00	0.0	365	0;0	365	n	0.00	0.0	342	0;0	342	n	0.00	0.0	494	0;0	494	n	0.00	0.0	207	0;0	207	n	0.05	23.0	480	20;26	480	y	0.00	0.0	221	0;0	221	n	0.00	0.0	294	0;0	294	n	0.00	0.0	431	0;0	431	n	0.00	0.0	301	0;0	301	n	0.00	0.0	448	0;0	448	n	ENSMUSG00000025809.16	Itgb1	chr8	protein_coding	integrin beta 1 (fibronectin receptor beta)
known_NIR_18559	chr8	129948431	129960790	-	129948431	129960386	5pMXE	ENSMUST00000190157.7	known	0.40	2	3	2	3	n	0.40	2	3	2	3	n	0.00	0	4	0	4	n	0.50	1	1	1	1	n	0.30	3	7	3	7	y	0.50	1	1	1	1	n	0.17	1	5	1	5	n	0.25	2	6	2	6	n	0.38	5	8	5	8	y	0.23	3	10	3	10	y	0.10	1	9	1	9	n	0.17	1	5	1	5	n	ENSMUSG00000071302.11	2610044O15Rik8	chr8	protein_coding	RIKEN cDNA 2610044O15 gene
known_NIR_18560	chr8	129990205	129993966	+	129990205	130007504	A3SS	ENSMUST00000212180.2	known	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	2	2	2	2	n	0.38	3	5	3	5	n	0.00	0	2	0	2	n	1.00	2	0	2	0	n	0.50	2	2	2	2	n	0.67	2	1	2	1	n	0.00	0	1	0	1	n	0.18	2	9	2	9	y	0.50	1	1	1	1	n	ENSMUSG00000110605.2	Gm32856	chr8	lncRNA	predicted gene, 32856
known_NIR_18561	chr8	13087547	13087625	+	13087547	13087815	A3SS	ENSMUST00000063820.12	known	0.85	23	4	23	4	y	0.80	12	3	12	3	y	0.95	37	2	37	2	y	1.00	17	0	17	0	n	1.00	24	0	24	0	n	1.00	8	0	8	0	n	1.00	23	0	23	0	n	0.76	13	4	13	4	y	0.86	6	1	6	1	n	0.86	24	4	24	4	y	1.00	8	0	8	0	n	0.74	23	8	23	8	y	ENSMUSG00000031444.17	F10	chr8	protein_coding	coagulation factor X
known_NIR_18562	chr8	13103463	13105293	+	13103469	13105293	A5SS	ENSMUST00000128418.8	known	0.57	67	51	67	51	y	0.64	95	54	95	54	y	0.60	71	47	71	47	y	0.52	75	70	75	70	y	0.57	85	64	85	64	y	0.55	21	17	21	17	y	0.53	93	81	93	81	y	0.49	36	37	36	37	y	0.64	76	42	76	42	y	0.51	86	82	86	82	y	0.60	71	48	71	48	y	0.58	93	66	93	66	y	ENSMUSG00000031444.17	F10	chr8	protein_coding	coagulation factor X
known_NIR_18563	chr8	13103463	13105293	+	13103473	13105293	A5SS	ENSMUST00000063820.12	known	0.04	67	1725	67	1725	y	0.04	95	2052	95	2052	y	0.05	71	1293	71	1293	y	0.04	75	1779	75	1779	y	0.03	85	2373	85	2373	y	0.02	21	862	21	862	y	0.04	93	2075	93	2075	y	0.03	36	1025	36	1025	y	0.04	76	1706	76	1706	y	0.04	86	2354	86	2354	y	0.03	71	1994	71	1994	y	0.04	93	2249	93	2249	y	ENSMUSG00000031444.17	F10	chr8	protein_coding	coagulation factor X
known_NIR_18564	chr8	13103469	13105293	+	13103473	13105293	A5SS	ENSMUST00000063820.12	known	0.03	51	1725	51	1725	y	0.03	54	2052	54	2052	y	0.04	47	1293	47	1293	y	0.04	70	1779	70	1779	y	0.03	64	2373	64	2373	y	0.02	17	862	17	862	y	0.04	81	2075	81	2075	y	0.03	37	1025	37	1025	y	0.02	42	1706	42	1706	y	0.03	82	2354	82	2354	y	0.02	48	1994	48	1994	y	0.03	66	2249	66	2249	y	ENSMUSG00000031444.17	F10	chr8	protein_coding	coagulation factor X
known_NIR_18565	chr8	13113568	13114602	+	13113414	13114602	A5SS	ENSMUST00000211363.2	known	0.02	13	643	13	643	y	0.01	7	534	7	534	y	0.03	9	348	9	348	y	0.02	19	840	19	840	y	0.02	19	1039	19	1039	y	0.01	2	281	2	281	y	0.01	11	820	11	820	y	0.02	10	478	10	478	y	0.02	12	619	12	619	y	0.02	18	1006	18	1006	y	0.02	11	563	11	563	y	0.02	16	732	16	732	y	ENSMUSG00000031445.6	Proz	chr8	protein_coding	protein Z, vitamin K-dependent plasma glycoprotein
known_NIR_18566	chr8	13122593	13123437	+	13122593	13123096	3pMXE	ENSMUST00000211363.2	known	0.99	1130	17	1130	17	y	0.99	1024	14	1024	14	y	1.00	725	1	725	1	n	0.99	1411	12	1411	12	y	1.00	1881	9	1881	9	y	1.00	529	2	529	2	y	0.99	1393	17	1393	17	y	1.00	878	0	878	0	n	0.99	1058	6	1058	6	y	0.99	1709	16	1709	16	y	0.99	1016	9	1016	9	y	0.99	1423	8	1423	8	y	ENSMUSG00000031445.6	Proz	chr8	protein_coding	protein Z, vitamin K-dependent plasma glycoprotein
known_NIR_18567	chr8	13136326	13136559	-	13136326	13140657	A5SS	ENSMUST00000168164.8	known	0.00	0	18	0	18	n	0.09	2	21	2	21	y	0.07	2	27	2	27	y	0.00	0	23	0	23	n	0.08	5	54	5	54	y	0.00	0	10	0	10	n	0.06	2	32	2	32	y	0.00	0	20	0	20	n	0.35	6	11	6	11	y	0.06	2	30	2	30	y	0.11	3	25	3	25	y	0.22	5	18	5	18	y	ENSMUSG00000038542.15	Pcid2	chr8	protein_coding	PCI domain containing 2
known_NIR_18568	chr8	13144197	13145831	-	13144197	13150325	A5SS	ENSMUST00000168164.8	known	0.95	37	2	37	2	y	1.00	32	0	32	0	n	1.00	60	0	60	0	n	1.00	42	0	42	0	n	0.98	55	1	55	1	n	1.00	25	0	25	0	n	1.00	33	0	33	0	n	1.00	23	0	23	0	n	1.00	31	0	31	0	n	1.00	46	0	46	0	n	1.00	31	0	31	0	n	1.00	57	0	57	0	n	ENSMUSG00000038542.15	Pcid2	chr8	protein_coding	PCI domain containing 2
known_NIR_18569	chr8	13148636	13150325	-	13144197	13150325	A3SS	ENSMUST00000168164.8	known	0.91	21	2	21	2	y	1.00	24	0	24	0	n	1.00	38	0	38	0	n	1.00	23	0	23	0	n	0.96	26	1	26	1	n	1.00	11	0	11	0	n	1.00	33	0	33	0	n	1.00	28	0	28	0	n	1.00	14	0	14	0	n	1.00	29	0	29	0	n	1.00	20	0	20	0	n	1.00	22	0	22	0	n	ENSMUSG00000038542.15	Pcid2	chr8	protein_coding	PCI domain containing 2
known_NIR_18570	chr8	13192598	13194277	+	13192598;13193134	13192962;13194277	ES	ENSMUST00000016680.14	known	0.00	0	171.5	0	161;182	n	0.00	0	162.0	0	160;164	n	0.00	1	205.0	1	205;205	n	0.00	0	235.5	0	233;238	n	0.00	0	261.5	0	271;252	n	0.01	1	109.0	1	103;115	n	0.00	0	263.5	0	243;284	n	0.00	0	135.5	0	142;129	n	0.02	3	153.5	3	147;160	y	0.00	0	268.0	0	275;261	n	0.00	0	160.0	0	152;168	n	0.00	0	245.0	0	225;265	n	ENSMUSG00000031446.15	Cul4a	chr8	protein_coding	cullin 4A
known_NIR_18571	chr8	13227142	13229323	-	13228947	13229323	3pMXE	ENSMUST00000211128.2	known	1.00	53	0	53	0	n	0.97	97	3	97	3	y	0.95	58	3	58	3	y	0.94	67	4	67	4	y	0.96	89	4	89	4	y	1.00	31	0	31	0	n	0.99	68	1	68	1	n	1.00	32	0	32	0	n	0.90	62	7	62	7	y	0.95	116	6	116	6	y	0.94	105	7	105	7	y	0.93	115	9	115	9	y	ENSMUSG00000038515.11	Grtp1	chr8	protein_coding	GH regulated TBC protein 1
known_NIR_18572	chr8	13227142;13228917	13228806;13229323	-	13227142	13229323	cassetteExon	ENSMUST00000210317.2	known	0.04	2.0	53	3;1	53	n	0.02	2.0	97	4;0	97	n	0.10	6.5	58	12;1	58	n	0.06	4.5	67	8;1	67	n	0.05	5.0	89	8;2	89	y	0.15	5.5	31	10;1	31	n	0.04	3.0	68	3;3	68	y	0.06	2.0	32	3;1	32	n	0.06	4.0	62	6;2	62	y	0.04	4.5	116	7;2	116	y	0.05	5.5	105	10;1	105	n	0.02	2.0	115	4;0	115	n	ENSMUSG00000038515.11	Grtp1	chr8	protein_coding	GH regulated TBC protein 1
known_NIR_18573	chr8	13227142;13228947	13228806;13229323	-	13227142	13229323	cassetteExon	ENSMUST00000210317.2	known	0.03	1.5	53	3;0	53	n	0.03	3.5	97	4;3	97	y	0.11	7.5	58	12;3	58	y	0.08	6.0	67	8;4	67	y	0.06	6.0	89	8;4	89	y	0.14	5.0	31	10;0	31	n	0.03	2.0	68	3;1	68	n	0.04	1.5	32	3;0	32	n	0.09	6.5	62	6;7	62	y	0.05	6.5	116	7;6	116	y	0.07	8.5	105	10;7	105	y	0.05	6.5	115	4;9	115	y	ENSMUSG00000038515.11	Grtp1	chr8	protein_coding	GH regulated TBC protein 1
known_NIR_18574	chr8	13229755	13236883	-	13229759	13236883	A3SS	ENSMUST00000209895.2	known	1.00	73	0	73	0	n	0.96	49	2	49	2	y	1.00	75	0	75	0	n	1.00	77	0	77	0	n	1.00	73	0	73	0	n	1.00	34	0	34	0	n	1.00	102	0	102	0	n	1.00	40	0	40	0	n	1.00	72	0	72	0	n	1.00	131	0	131	0	n	1.00	98	0	98	0	n	0.99	86	1	86	1	n	ENSMUSG00000038515.11	Grtp1	chr8	protein_coding	GH regulated TBC protein 1
known_NIR_18575	chr8	13239747	13250049	-	13239747	13242050	5pMXE	ENSMUST00000209465.2	known	0.00	0	64	0	64	n	0.00	0	77	0	77	n	0.00	0	58	0	58	n	0.00	0	69	0	69	n	0.00	0	126	0	126	n	0.00	0	26	0	26	n	0.00	0	71	0	71	n	0.00	0	35	0	35	n	0.02	2	88	2	88	y	0.00	0	117	0	117	n	0.00	0	104	0	104	n	0.00	0	100	0	100	n	ENSMUSG00000038515.11	Grtp1	chr8	protein_coding	GH regulated TBC protein 1
known_NIR_18576	chr8	13239747	13250049	-	13239747;13242208	13242050;13250049	ES	ENSMUST00000209895.2	known	0.00	0	65.0	0	64;66	n	0.00	0	68.0	0	77;59	n	0.00	0	51.5	0	58;45	n	0.00	0	72.5	0	69;76	n	0.00	0	100.0	0	126;74	n	0.00	0	25.5	0	26;25	n	0.00	0	65.0	0	71;59	n	0.00	0	36.0	0	35;37	n	0.03	2	70.0	2	88;52	y	0.00	0	109.0	0	117;101	n	0.00	0	82.0	0	104;60	n	0.00	0	94.0	0	100;88	n	ENSMUSG00000038515.11	Grtp1	chr8	protein_coding	GH regulated TBC protein 1
known_NIR_18577	chr8	13307976	13321590	-	13311467	13321590	3pMXE	ENSMUST00000203604.2	known	0.07	1	13	1	13	n	0.38	5	8	5	8	y	0.38	8	13	8	13	y	0.65	13	7	13	7	y	0.39	9	14	9	14	y	0.67	6	3	6	3	n	0.48	10	11	10	11	y	0.50	7	7	7	7	y	0.59	10	7	10	7	y	0.61	11	7	11	7	y	0.62	5	3	5	3	n	0.43	6	8	6	8	y	ENSMUSG00000038506.14	Dcun1d2	chr8	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae)
known_NIR_18578	chr8	13307976;13309043	13308947;13311385	-	13307976	13311385	cassetteExon	ENSMUST00000110839.10	known	1.00	10.0	0	11;9	0	n	1.00	10.0	0	12;8	0	n	1.00	12.5	0	14;11	0	n	0.80	8.0	2	12;4	2	y	1.00	13.5	0	15;12	0	n	0.82	4.5	1	7;2	1	n	1.00	14.0	0	21;7	0	n	1.00	8.5	0	14;3	0	n	1.00	8.5	0	10;7	0	n	1.00	14.5	0	17;12	0	n	0.78	7.0	2	12;2	2	y	1.00	9.5	0	13;6	0	n	ENSMUSG00000038506.14	Dcun1d2	chr8	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae)
known_NIR_18579	chr8	13307976;13309043	13308947;13321590	-	13307976	13321590	cassetteExon	ENSMUST00000110840.8	known	0.89	8.0	1	11;5	1	n	0.63	8.5	5	12;5	5	y	0.52	8.5	8	14;3	8	y	0.41	9.0	13	12;6	13	y	0.53	10.0	9	15;5	9	y	0.40	4.0	6	7;1	6	n	0.57	13.5	10	21;6	10	y	0.53	8.0	7	14;2	7	y	0.38	6.0	10	10;2	10	y	0.50	11.0	11	17;5	11	y	0.57	6.5	5	12;1	5	n	0.60	9.0	6	13;5	6	y	ENSMUSG00000038506.14	Dcun1d2	chr8	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae)
known_NIR_18580	chr8	13307976;13309043	13308947;13321590	-	13307976;13311467	13311385;13321590	MXE	ENSMUST00000110839.10	known	0.55	8.0	6.5	11;5	0;13	n	0.68	8.5	4.0	12;5	0;8	n	0.57	8.5	6.5	14;3	0;13	n	0.67	9.0	4.5	12;6	2;7	y	0.59	10.0	7.0	15;5	0;14	n	0.67	4.0	2.0	7;1	1;3	n	0.71	13.5	5.5	21;6	0;11	n	0.70	8.0	3.5	14;2	0;7	n	0.63	6.0	3.5	10;2	0;7	n	0.76	11.0	3.5	17;5	0;7	n	0.72	6.5	2.5	12;1	2;3	n	0.69	9.0	4.0	13;5	0;8	n	ENSMUSG00000038506.14	Dcun1d2	chr8	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae)
known_NIR_18581	chr8	13307976;13311467	13311385;13321590	-	13307976	13321590	cassetteExon	ENSMUST00000110840.8	known	0.87	6.5	1	0;13	1	n	0.44	4.0	5	0;8	5	n	0.45	6.5	8	0;13	8	n	0.26	4.5	13	2;7	13	y	0.44	7.0	9	0;14	9	n	0.25	2.0	6	1;3	6	n	0.35	5.5	10	0;11	10	n	0.33	3.5	7	0;7	7	n	0.26	3.5	10	0;7	10	n	0.24	3.5	11	0;7	11	n	0.33	2.5	5	2;3	5	y	0.40	4.0	6	0;8	6	n	ENSMUSG00000038506.14	Dcun1d2	chr8	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae)
known_NIR_18582	chr8	13309043	13321590	-	13309043;13311467	13311385;13321590	ES	ENSMUST00000203467.3	known	0.31	5	11.0	5	9;13	y	0.38	5	8.0	5	8;8	y	0.20	3	12.0	3	11;13	y	0.52	6	5.5	6	4;7	y	0.28	5	13.0	5	12;14	y	0.29	1	2.5	1	2;3	n	0.40	6	9.0	6	7;11	y	0.29	2	5.0	2	3;7	y	0.22	2	7.0	2	7;7	y	0.34	5	9.5	5	12;7	y	0.29	1	2.5	1	2;3	n	0.42	5	7.0	5	6;8	y	ENSMUSG00000038506.14	Dcun1d2	chr8	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae)
known_NIR_18583	chr8	13309043	13321590	-	13311467	13321590	3pMXE	ENSMUST00000203604.2	known	0.28	5	13	5	13	y	0.38	5	8	5	8	y	0.19	3	13	3	13	y	0.46	6	7	6	7	y	0.26	5	14	5	14	y	0.25	1	3	1	3	n	0.35	6	11	6	11	y	0.22	2	7	2	7	n	0.22	2	7	2	7	n	0.42	5	7	5	7	y	0.25	1	3	1	3	n	0.38	5	8	5	8	y	ENSMUSG00000038506.14	Dcun1d2	chr8	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae)
known_NIR_18584	chr8	13328685	13330917	-	13328685	13330909	A5SS	ENSMUST00000110840.8	known	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.05	1	18	1	18	n	0.00	0	18	0	18	n	0.05	1	18	1	18	n	0.00	0	13	0	13	n	0.12	3	23	3	23	y	0.11	2	16	2	16	y	0.00	0	12	0	12	n	0.00	0	20	0	20	n	0.00	0	8	0	8	n	0.05	1	18	1	18	n	ENSMUSG00000038506.14	Dcun1d2	chr8	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae)
known_NIR_18585	chr8	13388920	13389665	+	13388806	13389665	A5SS	ENSMUST00000209885.2	known	0.78	14	4	14	4	y	0.67	12	6	12	6	y	0.70	19	8	19	8	y	0.70	21	9	21	9	y	0.82	31	7	31	7	y	0.70	21	9	21	9	y	0.56	10	8	10	8	y	0.79	11	3	11	3	y	0.62	8	5	8	5	y	0.71	17	7	17	7	y	0.50	10	10	10	10	y	0.72	13	5	13	5	y	ENSMUSG00000038482.12	Tfdp1	chr8	protein_coding	transcription factor Dp 1
known_NIR_18586	chr8	13389739	13415089	+	13389739;13407109	13407043;13415089	ES	ENSMUST00000209885.2	known	0.07	3	39.0	3	44;34	y	0.22	8	28.0	8	27;29	y	0.08	6	68.0	6	64;72	y	0.18	9	41.0	9	37;45	y	0.19	13	55.5	13	58;53	y	0.13	6	40.0	6	38;42	y	0.24	14	45.0	14	47;43	y	0.14	5	29.5	5	27;32	y	0.14	5	31.5	5	30;33	y	0.12	7	49.0	7	43;55	y	0.29	14	34.0	14	28;40	y	0.10	4	35.5	4	36;35	y	ENSMUSG00000038482.12	Tfdp1	chr8	protein_coding	transcription factor Dp 1
known_NIR_18587	chr8	13419580;13420274	13420169;13420481	+	13419580	13420481	cassetteExon	ENSMUST00000209885.2	known	0.10	4.5	40	3;6	40	y	0.12	5.0	37	3;7	37	y	0.05	3.5	65	1;6	65	n	0.13	8.0	52	8;8	52	y	0.15	9.5	55	7;12	55	y	0.18	7.5	35	6;9	35	y	0.09	3.5	37	1;6	37	n	0.08	2.5	30	1;4	30	n	0.06	2.5	36	3;2	36	y	0.12	8.0	57	6;10	57	y	0.11	4.5	37	4;5	37	y	0.03	1.5	43	2;1	43	n	ENSMUSG00000038482.12	Tfdp1	chr8	protein_coding	transcription factor Dp 1
known_NIR_18588	chr8	13807854;13809052	13808998;13809140	+	13807854	13809140	cassetteExon	ENSMUST00000130173.9	known	0.90	26.0	3	23;29	3	y	1.00	25.5	0	24;27	0	n	1.00	31.5	0	28;35	0	n	0.91	38.5	4	37;40	4	y	1.00	31.5	0	27;36	0	n	0.91	21.5	2	19;24	2	y	1.00	33.0	0	32;34	0	n	0.93	13.5	1	14;13	1	n	1.00	27.5	0	27;28	0	n	0.93	26.0	2	24;28	2	y	1.00	18.0	0	14;22	0	n	0.97	28.5	1	22;35	1	n	ENSMUSG00000038416.16	Cdc16	chr8	protein_coding	CDC16 cell division cycle 16
known_NIR_18589	chr8	13979440	13981182	+	13979440	13981185	A3SS	ENSMUST00000209913.2	known	0.78	7	2	7	2	n	0.82	18	4	18	4	y	0.78	14	4	14	4	y	0.89	24	3	24	3	y	0.90	19	2	19	2	y	0.75	9	3	9	3	y	1.00	12	0	12	0	n	0.89	16	2	16	2	y	1.00	11	0	11	0	n	0.88	14	2	14	2	y	0.88	7	1	7	1	n	0.81	22	5	22	5	y	ENSMUSG00000038365.9	Fbxo25	chr8	protein_coding	F-box protein 25
known_NIR_18590	chr8	13985289	13989563	+	13985289;13988948	13988922;13989563	ES	ENSMUST00000209913.2	known	1.00	11	0.0	11	0;0	n	1.00	10	0.0	10	0;0	n	1.00	21	0.0	21	0;0	n	1.00	6	0.0	6	0;0	n	1.00	26	0.0	26	0;0	n	1.00	17	0.0	17	0;0	n	0.87	17	2.5	17	2;3	y	1.00	13	0.0	13	0;0	n	1.00	8	0.0	8	0;0	n	1.00	15	0.0	15	0;0	n	1.00	17	0.0	17	0;0	n	1.00	28	0.0	28	0;0	n	ENSMUSG00000038365.9	Fbxo25	chr8	protein_coding	F-box protein 25
known_NIR_18591	chr8	13985289	13989563	+	13988948	13989563	5pMXE	ENSMUST00000209310.2	known	1.00	11	0	11	0	n	1.00	10	0	10	0	n	1.00	21	0	21	0	n	1.00	6	0	6	0	n	1.00	26	0	26	0	n	1.00	17	0	17	0	n	0.85	17	3	17	3	y	1.00	13	0	13	0	n	1.00	8	0	8	0	n	1.00	15	0	15	0	n	1.00	17	0	17	0	n	1.00	28	0	28	0	n	ENSMUSG00000038365.9	Fbxo25	chr8	protein_coding	F-box protein 25
known_NIR_18592	chr8	14004135	14024541	-	14004135;14005817	14005720;14024541	ES	ENSMUST00000062613.12	known	0.00	0	20.0	0	26;14	n	0.00	0	18.0	0	22;14	n	0.00	0	21.5	0	29;14	n	0.00	0	21.5	0	28;15	n	0.03	1	35.0	1	40;30	n	0.00	0	15.5	0	19;12	n	0.04	1	24.0	1	32;16	n	0.00	0	22.5	0	30;15	n	0.00	0	16.5	0	23;10	n	0.00	0	26.0	0	35;17	n	0.15	3	17.0	3	23;11	y	0.07	2	25.5	2	31;20	y	ENSMUSG00000050052.13	Tdrp	chr8	protein_coding	testis development related protein
known_NIR_18593	chr8	14939118	14944572	+	14938076	14944572	A5SS	ENSMUST00000123990.2	known	1.00	25	0	25	0	n	1.00	41	0	41	0	n	1.00	65	0	65	0	n	1.00	35	0	35	0	n	1.00	40	0	40	0	n	0.93	26	2	26	2	y	0.86	32	5	32	5	y	1.00	16	0	16	0	n	0.95	20	1	20	1	n	1.00	28	0	28	0	n	1.00	22	0	22	0	n	0.89	16	2	16	2	y	ENSMUSG00000026317.8	Cln8	chr8	protein_coding	CLN8 transmembrane ER and ERGIC protein
known_NIR_18594	chr8	14939118;14940623	14940492;14944572	+	14939118	14944572	cassetteExon	ENSMUST00000027554.8	known	0.00	0.0	25	0;0	25	n	0.00	0.0	41	0;0	41	n	0.04	2.5	65	4;1	65	n	0.00	0.0	35	0;0	35	n	0.02	1.0	40	1;1	40	n	0.02	0.5	26	1;0	26	n	0.03	1.0	32	1;1	32	n	0.00	0.0	16	0;0	16	n	0.07	1.5	20	3;0	20	n	0.07	2.0	28	1;3	28	n	0.08	2.0	22	2;2	22	y	0.06	1.0	16	0;2	16	n	ENSMUSG00000026317.8	Cln8	chr8	protein_coding	CLN8 transmembrane ER and ERGIC protein
known_NIR_18595	chr8	14939417	14944572	+	14939118	14944572	A5SS	ENSMUST00000027554.8	known	0.00	0	25	0	25	n	0.00	0	41	0	41	n	0.00	0	65	0	65	n	0.05	2	35	2	35	y	0.00	0	40	0	40	n	0.00	0	26	0	26	n	0.00	0	32	0	32	n	0.00	0	16	0	16	n	0.00	0	20	0	20	n	0.00	0	28	0	28	n	0.00	0	22	0	22	n	0.00	0	16	0	16	n	ENSMUSG00000026317.8	Cln8	chr8	protein_coding	CLN8 transmembrane ER and ERGIC protein
known_NIR_18596	chr8	22552132	22555142	+	22552132	22555016	A3SS	ENSMUST00000072572.13	known	0.00	0	20	0	20	n	0.00	0	8	0	8	n	0.03	1	30	1	30	n	0.11	4	31	4	31	y	0.00	0	38	0	38	n	0.00	0	16	0	16	n	0.05	1	19	1	19	n	0.00	0	20	0	20	n	0.12	2	14	2	14	y	0.03	1	28	1	28	n	0.00	0	15	0	15	n	0.05	2	35	2	35	y	ENSMUSG00000063362.14	Alg11	chr8	protein_coding	asparagine-linked glycosylation 11 (alpha-1,2-mannosyltransferase)
known_NIR_18597	chr8	22733972	22748308	+	22733972;22742327	22742169;22748308	ES	ENSMUST00000069828.10	known	0.35	3	5.5	3	7;4	y	0.18	1	4.5	1	2;7	n	0.33	4	8.0	4	6;10	y	0.33	3	6.0	3	6;6	y	0.17	3	14.5	3	12;17	y	0.14	1	6.0	1	7;5	n	0.17	2	9.5	2	8;11	y	0.55	3	2.5	3	1;4	n	0.13	1	6.5	1	5;8	n	0.08	1	11.5	1	12;11	n	0.44	4	5.0	4	5;5	y	0.00	0	7.0	0	3;11	n	ENSMUSG00000031480.16	Thsd1	chr8	protein_coding	thrombospondin, type I, domain 1
known_NIR_18598	chr8	22996670	23025035	+	22966941	23025035	A5SS	ENSMUST00000067786.9	known	0.00	0	46	0	46	n	0.00	0	40	0	40	n	0.00	0	69	0	69	n	0.00	0	82	0	82	n	0.03	2	66	2	66	y	0.00	0	55	0	55	n	0.05	4	76	4	76	y	0.08	5	55	5	55	y	0.00	0	38	0	38	n	0.01	1	88	1	88	n	0.03	1	36	1	36	n	0.00	0	78	0	78	n	ENSMUSG00000037656.10	Slc20a2	chr8	protein_coding	solute carrier family 20, member 2
known_NIR_18599	chr8	23073752	23077569	-	23073752	23077566	A5SS	ENSMUST00000179233.2	known	0.99	225	2	225	2	y	1.00	176	0	176	0	n	0.99	282	3	282	3	y	0.99	282	2	282	2	y	0.98	250	4	250	4	y	0.99	141	2	141	2	y	0.85	236	43	236	43	y	0.98	181	3	181	3	y	0.99	220	3	220	3	y	1.00	301	0	301	0	n	0.99	226	2	226	2	y	0.99	335	2	335	2	y	ENSMUSG00000008892.13	Vdac3	chr8	protein_coding	voltage-dependent anion channel 3
known_NIR_18600	chr8	23132372	23137429	-	23132372;23135110	23135061;23137429	ES	ENSMUST00000033938.7	known	0.02	1	64.5	1	66;63	n	0.09	4	38.5	4	37;40	y	0.00	0	68.0	0	51;85	n	0.02	1	52.5	1	53;52	n	0.00	0	64.5	0	66;63	n	0.00	0	38.0	0	39;37	n	0.06	5	79.0	5	76;82	y	0.04	2	42.5	2	41;44	y	0.05	2	35.5	2	39;32	y	0.00	0	67.5	0	67;68	n	0.00	0	54.0	0	51;57	n	0.00	0	63.5	0	58;69	n	ENSMUSG00000031536.7	Polb	chr8	protein_coding	polymerase (DNA directed), beta
known_NIR_18601	chr8	23159741	23161647	-	23159746	23161647	A3SS	ENSMUST00000033939.13	known	0.00	0	56	0	56	n	0.05	3	54	3	54	y	0.00	0	58	0	58	n	0.00	0	77	0	77	n	0.00	0	83	0	83	n	0.03	1	38	1	38	n	0.04	2	52	2	52	y	0.00	0	39	0	39	n	0.00	0	48	0	48	n	0.03	2	65	2	65	y	0.05	2	41	2	41	y	0.00	0	70	0	70	n	ENSMUSG00000031537.16	Ikbkb	chr8	protein_coding	inhibitor of kappaB kinase beta
known_NIR_18602	chr8	23183948	23184028	-	23183948	23185179	A5SS	ENSMUST00000033939.13	known	0.07	2	28	2	28	y	0.21	3	11	3	11	y	0.00	0	40	0	40	n	0.09	4	42	4	42	y	0.04	3	72	3	72	y	0.04	1	24	1	24	n	0.05	2	39	2	39	y	0.03	1	33	1	33	n	0.22	6	21	6	21	y	0.00	0	53	0	53	n	0.00	0	19	0	19	n	0.00	0	53	0	53	n	ENSMUSG00000031537.16	Ikbkb	chr8	protein_coding	inhibitor of kappaB kinase beta
known_NIR_18603	chr8	23192889	23196098	-	23185273	23196098	A3SS	ENSMUST00000033939.13	known	0.43	30	40	30	40	y	0.50	32	32	32	32	y	0.47	43	48	43	48	y	0.35	31	57	31	57	y	0.37	37	64	37	64	y	0.45	29	36	29	36	y	0.49	48	50	48	50	y	0.42	27	38	27	38	y	0.46	26	30	26	30	y	0.39	38	59	38	59	y	0.63	36	21	36	21	y	0.44	54	70	54	70	y	ENSMUSG00000031537.16	Ikbkb	chr8	protein_coding	inhibitor of kappaB kinase beta
known_NIR_18604	chr8	23349648;23351618	23351533;23351904	+	23349648	23351904	cassetteExon	ENSMUST00000238975.2	known	1.00	6.0	0	4;8	0	n	1.00	3.5	0	2;5	0	n	1.00	7.0	0	6;8	0	n	0.75	6.0	2	4;8	2	y	0.76	6.5	2	4;9	2	y	0.54	3.5	3	3;4	3	y	1.00	4.5	0	4;5	0	n	1.00	5.0	0	5;5	0	n	1.00	3.5	0	5;2	0	n	1.00	6.0	0	5;7	0	n	1.00	9.5	0	7;12	0	n	0.73	5.5	2	4;7	2	y	ENSMUSG00000031540.15	Kat6a	chr8	protein_coding	K(lysine) acetyltransferase 6A
known_NIR_18605	chr8	23403854	23404285	+	23401992	23404285	A5SS	ENSMUST00000238975.2	known	0.08	1	12	1	12	n	0.00	0	1	0	1	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.05	1	19	1	19	n	0.17	1	5	1	5	n	0.00	0	8	0	8	n	0.20	3	12	3	12	y	0.00	0	5	0	5	n	0.00	0	24	0	24	n	0.11	1	8	1	8	n	0.00	0	12	0	12	n	ENSMUSG00000031540.15	Kat6a	chr8	protein_coding	K(lysine) acetyltransferase 6A
known_NIR_18606	chr8	23629511	23630161	+	23625850	23630161	A5SS	ENSMUST00000110688.9	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.90	18	2	18	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000031543.19	Ank1	chr8	protein_coding	ankyrin 1, erythroid
known_NIR_18607	chr8	23631320	23631612	+	23631245	23631612	A5SS	ENSMUST00000110688.9	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.09	2	21	2	21	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031543.19	Ank1	chr8	protein_coding	ankyrin 1, erythroid
known_NIR_18608	chr8	23672979	23680732	-	23672979;23674614	23674545;23680732	ES	ENSMUST00000167004.3	known	0.00	0	314.5	0	299;330	n	0.00	0	239.5	0	219;260	n	0.00	0	266.0	0	252;280	n	0.00	0	343.0	0	337;349	n	0.00	0	344.0	0	351;337	n	0.01	2	143.5	2	142;145	y	0.00	0	348.5	0	339;358	n	0.00	0	155.0	0	157;153	n	0.00	0	325.5	0	302;349	n	0.01	3	542.5	3	511;574	y	0.00	0	337.5	0	325;350	n	0.00	2	713.0	2	668;758	y	ENSMUSG00000031545.7	Gpat4	chr8	protein_coding	glycerol-3-phosphate acyltransferase 4
known_NIR_18609	chr8	25483131;25484100	25484030;25485126	-	25483131	25485126	cassetteExon	ENSMUST00000084035.12	known	0.00	0.0	70	0;0	70	n	0.03	1.5	51	3;0	51	n	0.01	3.0	252	6;0	252	n	0.01	1.5	123	3;0	123	n	0.02	3.5	182	5;2	182	y	0.00	0.0	105	0;0	105	n	0.02	2.5	120	5;0	120	n	0.01	0.5	96	0;1	96	n	0.01	0.5	62	1;0	62	n	0.01	1.0	153	1;1	153	n	0.02	1.5	72	3;0	72	n	0.00	0.0	128	0;0	128	n	ENSMUSG00000031555.16	Adam9	chr8	protein_coding	a disintegrin and metallopeptidase domain 9 (meltrin gamma)
known_NIR_18610	chr8	25507608	25510455	+	25507608;25508169	25508082;25510455	ES	ENSMUST00000033961.7	known	0.00	0	203.5	0	198;209	n	0.00	0	183.5	0	173;194	n	0.02	4	162.5	4	176;149	y	0.00	1	276.5	1	269;284	n	0.00	0	284.5	0	266;303	n	0.00	0	104.5	0	122;87	n	0.00	0	266.5	0	277;256	n	0.00	0	114.0	0	111;117	n	0.00	0	187.5	0	203;172	n	0.00	0	275.5	0	272;279	n	0.00	0	219.5	0	198;241	n	0.00	0	214.5	0	227;202	n	ENSMUSG00000031556.7	Tm2d2	chr8	protein_coding	TM2 domain containing 2
known_NIR_18611	chr8	25668010	25671839	-	25668010	25690107	A5SS	ENSMUST00000210767.2	known	0.38	3	5	3	5	n	1.00	3	0	3	0	n	0.35	7	13	7	13	y	0.42	5	7	5	7	y	0.35	6	11	6	11	y	0.55	6	5	6	5	y	0.67	4	2	4	2	n	0.45	5	6	5	6	y	0.50	4	4	4	4	n	0.50	6	6	6	6	y	0.83	5	1	5	1	n	0.69	11	5	11	5	y	ENSMUSG00000065954.12	Tacc1	chr8	protein_coding	transforming, acidic coiled-coil containing protein 1
known_NIR_18612	chr8	25668010	25690107	-	25668010	25730810	A5SS	ENSMUST00000210933.2	known	1.00	5	0	5	0	n	-	-	-	-	-	-	0.87	13	2	13	2	y	1.00	7	0	7	0	n	0.92	11	1	11	1	n	0.83	5	1	5	1	n	0.50	2	2	2	2	n	1.00	6	0	6	0	n	1.00	4	0	4	0	n	1.00	6	0	6	0	n	1.00	1	0	1	0	n	0.83	5	1	5	1	n	ENSMUSG00000065954.12	Tacc1	chr8	protein_coding	transforming, acidic coiled-coil containing protein 1
known_NIR_18613	chr8	25668010	25690107	-	25668010;25672946	25671839;25690107	ES	ENSMUST00000084030.6	known	0.50	5	5.0	5	3;7	y	0.00	0	4.0	0	3;5	n	0.57	13	10.0	13	7;13	y	0.45	7	8.5	7	5;12	y	0.48	11	12.0	11	6;18	y	0.50	5	5.0	5	6;4	y	0.27	2	5.5	2	4;7	y	0.44	6	7.5	6	5;10	y	0.53	4	3.5	4	4;3	y	0.38	6	10.0	6	6;14	y	0.12	1	7.0	1	5;9	n	0.36	5	9.0	5	11;7	y	ENSMUSG00000065954.12	Tacc1	chr8	protein_coding	transforming, acidic coiled-coil containing protein 1
known_NIR_18614	chr8	25668010	25691138	-	25668010	25690107	A5SS&ES	ENSMUST00000210767.2	known	0.00	0	5	0	5	n	-	-	-	-	-	-	0.07	1	13	1	13	n	0.30	3	7	3	7	y	0.00	0	11	0	11	n	0.29	2	5	2	5	n	0.00	0	2	0	2	n	0.33	3	6	3	6	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.67	2	1	2	1	n	0.00	0	5	0	5	n	ENSMUSG00000065954.12	Tacc1	chr8	protein_coding	transforming, acidic coiled-coil containing protein 1
known_NIR_18615	chr8	25668010;25690222	25690107;25691138	-	25668010	25691138	cassetteExon	ENSMUST00000084512.11	known	1.00	3.0	0	5;1	0	n	-	-	-	-	-	-	0.88	7.5	1	13;2	1	n	0.60	4.5	3	7;2	3	y	1.00	5.5	0	11;0	0	n	0.56	2.5	2	5;0	2	n	1.00	3.0	0	2;4	0	n	0.50	3.0	3	6;0	3	n	1.00	2.0	0	4;0	0	n	0.75	3.0	1	6;0	1	n	0.20	0.5	2	1;0	2	n	1.00	2.5	0	5;0	0	n	ENSMUSG00000065954.12	Tacc1	chr8	protein_coding	transforming, acidic coiled-coil containing protein 1
known_NIR_18616	chr8	25672946	25690107	-	25668010	25690107	A3SS	ENSMUST00000210767.2	known	0.58	7	5	7	5	y	1.00	5	0	5	0	n	0.50	13	13	13	13	y	0.63	12	7	12	7	y	0.62	18	11	18	11	y	0.44	4	5	4	5	n	0.78	7	2	7	2	n	0.62	10	6	10	6	y	0.43	3	4	3	4	n	0.70	14	6	14	6	y	0.90	9	1	9	1	n	0.58	7	5	7	5	y	ENSMUSG00000065954.12	Tacc1	chr8	protein_coding	transforming, acidic coiled-coil containing protein 1
known_NIR_18617	chr8	25690222	25746378	-	25690222	25691138	5pMXE	ENSMUST00000084030.6	known	0.75	3	1	3	1	n	1.00	4	0	4	0	n	0.89	17	2	17	2	y	0.71	5	2	5	2	n	1.00	8	0	8	0	n	1.00	9	0	9	0	n	0.50	4	4	4	4	n	1.00	7	0	7	0	n	1.00	6	0	6	0	n	1.00	6	0	6	0	n	1.00	2	0	2	0	n	1.00	8	0	8	0	n	ENSMUSG00000065954.12	Tacc1	chr8	protein_coding	transforming, acidic coiled-coil containing protein 1
known_NIR_18618	chr8	26009445	26022266	+	26004267	26022266	A5SS	ENSMUST00000155564.8	known	1.00	6	0	6	0	n	1.00	1	0	1	0	n	0.25	4	12	4	12	y	0.78	7	2	7	2	n	0.50	9	9	9	9	y	0.56	5	4	5	4	n	1.00	14	0	14	0	n	1.00	3	0	3	0	n	0.67	2	1	2	1	n	0.71	5	2	5	2	n	0.73	8	3	8	3	y	0.58	7	5	7	5	y	ENSMUSG00000031565.19	Fgfr1	chr8	protein_coding	fibroblast growth factor receptor 1
known_NIR_18619	chr8	26022444	26047747	+	26022444	26045524	3pMXE	ENSMUST00000155564.8	known	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.21	4	15	4	15	y	0.25	2	6	2	6	n	0.00	0	8	0	8	n	0.11	1	8	1	8	n	0.50	5	5	5	5	y	0.00	0	15	0	15	n	0.20	1	4	1	4	n	0.38	3	5	3	5	n	0.25	1	3	1	3	n	0.00	0	15	0	15	n	ENSMUSG00000031565.19	Fgfr1	chr8	protein_coding	fibroblast growth factor receptor 1
known_NIR_18620	chr8	26022444	26047747	+	26022444;26045790	26045524;26047747	ES	ENSMUST00000084027.13	known	0.20	1	4.0	1	5;3	n	0.00	0	2.5	0	2;3	n	0.22	4	14.5	4	15;14	y	0.21	2	7.5	2	6;9	y	0.00	0	9.0	0	8;10	n	0.12	1	7.5	1	8;7	n	0.33	5	10.0	5	5;15	y	0.00	0	11.0	0	15;7	n	0.13	1	6.5	1	4;9	n	0.29	3	7.5	3	5;10	y	0.20	1	4.0	1	3;5	n	0.00	0	15.5	0	15;16	n	ENSMUSG00000031565.19	Fgfr1	chr8	protein_coding	fibroblast growth factor receptor 1
known_NIR_18621	chr8	26022444	26047747	+	26045790	26047747	5pMXE	ENSMUST00000138104.9	known	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.22	4	14	4	14	y	0.18	2	9	2	9	y	0.00	0	10	0	10	n	0.12	1	7	1	7	n	0.25	5	15	5	15	y	0.00	0	7	0	7	n	0.10	1	9	1	9	n	0.23	3	10	3	10	y	0.17	1	5	1	5	n	0.00	0	16	0	16	n	ENSMUSG00000031565.19	Fgfr1	chr8	protein_coding	fibroblast growth factor receptor 1
known_NIR_18622	chr8	26047830	26048087	+	26047836	26048087	A5SS	ENSMUST00000084027.13	known	0.12	1	7	1	7	n	0.00	0	2	0	2	n	0.80	12	3	12	3	y	0.50	4	4	4	4	n	0.33	4	8	4	8	y	0.56	5	4	5	4	n	0.47	8	9	8	9	y	0.60	3	2	3	2	n	0.56	5	4	5	4	n	0.71	12	5	12	5	y	0.33	4	8	4	8	y	0.53	8	7	8	7	y	ENSMUSG00000031565.19	Fgfr1	chr8	protein_coding	fibroblast growth factor receptor 1
known_NIR_18623	chr8	26056923	26058204	+	26056929	26058204	A5SS	ENSMUST00000084027.13	known	0.00	0	8	0	8	n	0.09	1	10	1	10	n	0.18	2	9	2	9	y	0.20	3	12	3	12	y	0.33	6	12	6	12	y	0.00	0	6	0	6	n	0.33	4	8	4	8	y	0.31	4	9	4	9	y	0.20	2	8	2	8	y	0.00	0	13	0	13	n	0.83	5	1	5	1	n	0.18	3	14	3	14	y	ENSMUSG00000031565.19	Fgfr1	chr8	protein_coding	fibroblast growth factor receptor 1
known_NIR_18624	chr8	26082611	26083767	-	26082611	26083735	A5SS	ENSMUST00000079160.8	known	0.56	5	4	5	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.40	4	6	4	6	y	0.00	0	1	0	1	n	0.33	2	4	2	4	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000037363.10	Letm2	chr8	protein_coding	leucine zipper-EF-hand containing transmembrane protein 2
known_NIR_18625	chr8	26092752	26130593	+	26092009	26130593	A5SS	ENSMUST00000155861.8	known	0.39	14	22	14	22	y	0.50	7	7	7	7	y	0.58	36	26	36	26	y	0.46	16	19	16	19	y	0.51	28	27	28	27	y	0.52	17	16	17	16	y	0.59	27	19	27	19	y	0.37	7	12	7	12	y	0.41	14	20	14	20	y	0.68	26	12	26	12	y	0.38	13	21	13	21	y	0.64	32	18	32	18	y	ENSMUSG00000054823.18	Nsd3	chr8	protein_coding	nuclear receptor binding SET domain protein 3
known_NIR_18626	chr8	26165758	26168732	+	26165758	26166719	3pMXE	ENSMUST00000155861.8	known	0.04	2	50	2	50	y	0.02	1	40	1	40	n	0.05	4	69	4	69	y	0.04	2	43	2	43	y	0.04	2	52	2	52	y	0.04	1	23	1	23	n	0.13	9	59	9	59	y	0.00	0	29	0	29	n	0.00	0	53	0	53	n	0.00	0	56	0	56	n	0.02	1	55	1	55	n	0.07	4	54	4	54	y	ENSMUSG00000054823.18	Nsd3	chr8	protein_coding	nuclear receptor binding SET domain protein 3
known_NIR_18627	chr8	26173338;26181188	26181042;26184716	+	26173338	26184716	cassetteExon	ENSMUST00000139966.8	known	0.86	12.0	2	8;16	2	y	0.47	4.5	5	2;7	5	y	0.57	8.0	6	7;9	6	y	0.50	11.0	11	8;14	11	y	0.80	16.0	4	20;12	4	y	1.00	3.5	0	6;1	0	n	0.68	6.5	3	7;6	3	y	0.45	5.0	6	4;6	6	y	0.65	7.5	4	7;8	4	y	0.68	12.5	6	11;14	6	y	0.61	9.5	6	11;8	6	y	0.70	11.5	5	11;12	5	y	ENSMUSG00000054823.18	Nsd3	chr8	protein_coding	nuclear receptor binding SET domain protein 3
known_NIR_18628	chr8	26196635	26199090	+	26196668	26199090	A5SS	ENSMUST00000139966.8	known	0.13	4	26	4	26	y	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.08	2	23	2	23	y	0.40	2	3	2	3	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	17	0	17	n	0.00	0	25	0	25	n	0.08	2	22	2	22	y	0.17	4	20	4	20	y	ENSMUSG00000054823.18	Nsd3	chr8	protein_coding	nuclear receptor binding SET domain protein 3
known_NIR_18629	chr8	26210362	26210582	+	26210402	26210582	A5SS	ENSMUST00000068916.16	known	0.08	7	81	7	81	y	0.05	6	109	6	109	y	0.06	21	358	21	358	y	0.11	6	49	6	49	y	0.05	10	195	10	195	y	0.05	13	232	13	232	y	0.07	10	126	10	126	y	0.07	18	231	18	231	y	0.07	4	56	4	56	y	0.08	7	84	7	84	y	0.04	4	86	4	86	y	0.06	4	63	4	63	y	ENSMUSG00000031570.18	Plpp5	chr8	protein_coding	phospholipid phosphatase 5
known_NIR_18630	chr8	26210510	26210582	+	26210362	26210582	A5SS	ENSMUST00000124764.8	known	0.22	2	7	2	7	n	0.00	0	6	0	6	n	0.09	2	21	2	21	y	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.13	2	13	2	13	y	0.00	0	10	0	10	n	0.00	0	18	0	18	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	ENSMUSG00000031570.18	Plpp5	chr8	protein_coding	phospholipid phosphatase 5
known_NIR_18631	chr8	26210510	26210582	+	26210402	26210582	A5SS	ENSMUST00000068916.16	known	0.02	2	81	2	81	y	0.00	0	109	0	109	n	0.01	2	358	2	358	y	0.00	0	49	0	49	n	0.00	0	195	0	195	n	0.01	2	232	2	232	y	0.00	0	126	0	126	n	0.00	0	231	0	231	n	0.00	0	56	0	56	n	0.00	0	84	0	84	n	0.00	0	86	0	86	n	0.00	0	63	0	63	n	ENSMUSG00000031570.18	Plpp5	chr8	protein_coding	phospholipid phosphatase 5
known_NIR_18632	chr8	26211813	26212499	+	26211813	26212457	A3SS	ENSMUST00000068916.16	known	0.02	1	61	1	61	n	0.04	3	82	3	82	y	0.04	12	280	12	280	y	0.07	4	53	4	53	y	0.01	2	153	2	153	y	0.01	2	195	2	195	y	0.03	3	102	3	102	y	0.05	8	154	8	154	y	0.03	1	32	1	32	n	0.02	2	80	2	80	y	0.02	1	65	1	65	n	0.00	0	34	0	34	n	ENSMUSG00000031570.18	Plpp5	chr8	protein_coding	phospholipid phosphatase 5
known_NIR_18633	chr8	26212627	26214107	+	26213140	26214107	5pMXE	ENSMUST00000146762.2	known	0.53	68	60	68	60	y	0.41	52	74	52	74	y	0.59	254	175	254	175	y	0.48	42	46	42	46	y	0.54	138	118	138	118	y	0.50	150	149	150	149	y	0.47	87	100	87	100	y	0.52	117	109	117	109	y	0.57	24	18	24	18	y	0.56	63	49	63	49	y	0.51	47	46	47	46	y	0.65	56	30	56	30	y	ENSMUSG00000031570.18	Plpp5	chr8	protein_coding	phospholipid phosphatase 5
known_NIR_18634	chr8	26212627	26214208	+	26212627	26213058	A3SS&ES	ENSMUST00000139836.8	known	0.00	0	52	0	52	n	0.00	0	70	0	70	n	0.05	9	177	9	177	y	0.00	0	57	0	57	n	0.00	0	116	0	116	n	0.02	4	184	4	184	y	0.00	0	78	0	78	n	0.00	0	108	0	108	n	0.00	0	23	0	23	n	0.00	0	40	0	40	n	0.00	0	44	0	44	n	0.00	0	19	0	19	n	ENSMUSG00000031570.18	Plpp5	chr8	protein_coding	phospholipid phosphatase 5
known_NIR_18635	chr8	26212627	26214208	+	26212627	26214107	A3SS	ENSMUST00000068916.16	known	0.00	0	68	0	68	n	0.00	0	52	0	52	n	0.03	9	254	9	254	y	0.00	0	42	0	42	n	0.00	0	138	0	138	n	0.03	4	150	4	150	y	0.00	0	87	0	87	n	0.00	0	117	0	117	n	0.00	0	24	0	24	n	0.00	0	63	0	63	n	0.00	0	47	0	47	n	0.00	0	56	0	56	n	ENSMUSG00000031570.18	Plpp5	chr8	protein_coding	phospholipid phosphatase 5
known_NIR_18636	chr8	26212627;26213140	26213058;26214107	+	26212627	26214107	cassetteExon	ENSMUST00000068916.16	known	0.45	56.0	68	52;60	68	y	0.58	72.0	52	70;74	52	y	0.41	176.0	254	177;175	254	y	0.55	51.5	42	57;46	42	y	0.46	117.0	138	116;118	138	y	0.53	166.5	150	184;149	150	y	0.51	89.0	87	78;100	87	y	0.48	108.5	117	108;109	117	y	0.46	20.5	24	23;18	24	y	0.41	44.5	63	40;49	63	y	0.49	45.0	47	44;46	47	y	0.30	24.5	56	19;30	56	y	ENSMUSG00000031570.18	Plpp5	chr8	protein_coding	phospholipid phosphatase 5
known_NIR_18637	chr8	26229612	26231628	-	26229612;26231381	26231314;26231628	ES	ENSMUST00000033975.9	known	0.12	1	7.5	1	7;8	n	0.00	0	4.0	0	3;5	n	0.10	3	27.5	3	30;25	y	0.00	0	10.5	0	13;8	n	0.00	0	11.0	0	14;8	n	0.00	0	9.0	0	13;5	n	0.06	1	17.0	1	17;17	n	0.07	1	12.5	1	15;10	n	0.00	0	7.5	0	9;6	n	0.05	1	20.0	1	22;18	n	0.18	3	14.0	3	10;18	y	0.00	0	13.0	0	11;15	n	ENSMUSG00000061313.11	Ddhd2	chr8	protein_coding	DDHD domain containing 2
known_NIR_18638	chr8	26242257	26242975	-	26242317	26242975	A3SS	ENSMUST00000033975.9	known	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	31	0	31	n	0.00	0	19	0	19	n	0.16	4	21	4	21	y	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.00	0	18	0	18	n	0.00	0	5	0	5	n	0.00	0	22	0	22	n	0.00	0	14	0	14	n	0.00	0	19	0	19	n	ENSMUSG00000061313.11	Ddhd2	chr8	protein_coding	DDHD domain containing 2
known_NIR_18639	chr8	26243200	26244294	-	26243200	26244213	A5SS	ENSMUST00000033975.9	known	1.00	1	0	1	0	n	0.40	2	3	2	3	n	0.52	11	10	11	10	y	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.67	4	2	4	2	n	0.17	2	10	2	10	y	0.27	3	8	3	8	y	0.33	1	2	1	2	n	0.50	8	8	8	8	y	0.60	6	4	6	4	y	0.43	3	4	3	4	n	ENSMUSG00000061313.11	Ddhd2	chr8	protein_coding	DDHD domain containing 2
known_NIR_18640	chr8	26318887	26322668	-	26318887;26321376	26321301;26322668	ES	ENSMUST00000068892.15	known	0.08	2	24.0	2	26;22	y	0.00	0	25.0	0	30;20	n	0.00	0	33.5	0	39;28	n	0.00	0	41.5	0	46;37	n	0.00	0	50.5	0	53;48	n	0.00	0	12.5	0	12;13	n	0.00	0	35.0	0	33;37	n	0.00	0	24.0	0	22;26	n	0.05	2	42.0	2	51;33	y	0.00	0	46.0	0	53;39	n	0.00	0	24.0	0	26;22	n	0.07	3	40.0	3	40;40	y	ENSMUSG00000031575.19	Ash2l	chr8	protein_coding	ASH2 like histone lysine methyltransferase complex subunit
known_NIR_18641	chr8	26330103	26330397	-	26330103	26330610	A5SS	ENSMUST00000068892.15	known	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.00	0	21	0	21	n	0.03	1	33	1	33	n	0.00	0	19	0	19	n	0.00	0	26	0	26	n	0.00	0	14	0	14	n	0.00	0	19	0	19	n	0.09	3	29	3	29	y	0.00	0	16	0	16	n	0.00	0	26	0	26	n	ENSMUSG00000031575.19	Ash2l	chr8	protein_coding	ASH2 like histone lysine methyltransferase complex subunit
known_NIR_18642	chr8	26522058;26522559	26522456;26524959	-	26522058	26524959	cassetteExon	ENSMUST00000037182.14	known	0.21	4.0	15	4;4	15	y	0.23	5.0	17	6;4	17	y	0.24	8.0	25	7;9	25	y	0.22	6.5	23	5;8	23	y	0.31	10.0	22	12;8	22	y	0.20	3.5	14	7;0	14	n	0.19	7.5	32	6;9	32	y	0.40	6.0	9	7;5	9	y	0.08	2.0	23	4;0	23	n	0.22	4.0	14	5;3	14	y	0.30	3.5	8	4;3	8	y	0.20	6.0	24	6;6	24	y	ENSMUSG00000037234.18	Hook3	chr8	protein_coding	hook microtubule tethering protein 3
known_NIR_18643	chr8	26529779	26534268	-	26529779	26549268	A5SS	ENSMUST00000147613.3	known	0.95	20	1	20	1	n	1.00	12	0	12	0	n	1.00	34	0	34	0	n	0.95	20	1	20	1	n	0.92	23	2	23	2	y	1.00	13	0	13	0	n	1.00	41	0	41	0	n	1.00	34	0	34	0	n	1.00	19	0	19	0	n	1.00	30	0	30	0	n	1.00	17	0	17	0	n	1.00	42	0	42	0	n	ENSMUSG00000037234.18	Hook3	chr8	protein_coding	hook microtubule tethering protein 3
known_NIR_18644	chr8	26538367	26549268	-	26529779	26549268	A3SS	ENSMUST00000147613.3	known	0.95	20	1	20	1	n	1.00	10	0	10	0	n	1.00	26	0	26	0	n	0.94	16	1	16	1	n	0.95	37	2	37	2	y	1.00	20	0	20	0	n	1.00	29	0	29	0	n	1.00	31	0	31	0	n	1.00	14	0	14	0	n	1.00	20	0	20	0	n	1.00	14	0	14	0	n	1.00	34	0	34	0	n	ENSMUSG00000037234.18	Hook3	chr8	protein_coding	hook microtubule tethering protein 3
known_NIR_18645	chr8	26609628	26610473	+	26609628	26610468	A3SS	ENSMUST00000014022.15	known	0.00	0	16	0	16	n	0.20	3	12	3	12	y	0.00	0	9	0	9	n	0.26	6	17	6	17	y	0.11	4	34	4	34	y	0.00	0	20	0	20	n	0.21	4	15	4	15	y	0.20	6	24	6	24	y	0.09	1	10	1	10	n	0.14	5	31	5	31	y	0.22	5	18	5	18	y	0.10	3	26	3	26	y	ENSMUSG00000013878.19	Rnf170	chr8	protein_coding	ring finger protein 170
known_NIR_18646	chr8	26610591	26615932	+	26610591;26614015	26613875;26615932	ES	ENSMUST00000014022.15	known	0.00	0	17.0	0	17;17	n	0.06	1	17.0	1	22;12	n	0.06	2	34.0	2	35;33	y	0.00	0	31.5	0	27;36	n	0.00	0	40.5	0	43;38	n	0.04	1	24.5	1	29;20	n	0.15	6	34.0	6	37;31	y	0.04	1	21.5	1	25;18	n	0.00	0	20.5	0	21;20	n	0.03	1	29.0	1	30;28	n	0.00	0	29.5	0	31;28	n	0.00	0	30.5	0	39;22	n	ENSMUSG00000013878.19	Rnf170	chr8	protein_coding	ring finger protein 170
known_NIR_18647	chr8	26610591	26615932	+	26614015	26615932	5pMXE	ENSMUST00000124867.3	known	0.00	0	17	0	17	n	0.08	1	12	1	12	n	0.06	2	33	2	33	y	0.00	0	36	0	36	n	0.00	0	38	0	38	n	0.05	1	20	1	20	n	0.16	6	31	6	31	y	0.05	1	18	1	18	n	0.00	0	20	0	20	n	0.03	1	28	1	28	n	0.00	0	28	0	28	n	0.00	0	22	0	22	n	ENSMUSG00000013878.19	Rnf170	chr8	protein_coding	ring finger protein 170
known_NIR_18648	chr8	26619183	26628897	+	26619183	26625657	A3SS&ES	ENSMUST00000014022.15	known	0.00	0	15	0	15	n	0.00	0	20	0	20	n	0.02	1	40	1	40	n	0.03	1	29	1	29	n	0.00	0	46	0	46	n	0.00	0	25	0	25	n	0.06	2	30	2	30	y	0.00	0	27	0	27	n	0.00	0	22	0	22	n	0.00	0	48	0	48	n	0.00	0	15	0	15	n	0.06	2	31	2	31	y	ENSMUSG00000013878.19	Rnf170	chr8	protein_coding	ring finger protein 170
known_NIR_18649	chr8	26619183	26628897	+	26619183	26629008	A3SS	ENSMUST00000124757.8	known	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.09	1	10	1	10	n	0.10	1	9	1	9	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.29	2	5	2	5	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	4	0	4	n	0.17	2	10	2	10	y	ENSMUSG00000013878.19	Rnf170	chr8	protein_coding	ring finger protein 170
known_NIR_18650	chr8	26619183	26629008	+	26619183;26625730	26625657;26629008	ES	ENSMUST00000014022.15	known	0.21	4	15.5	4	15;16	y	0.13	3	20.0	3	20;20	y	0.20	10	40.5	10	40;41	y	0.22	9	31.5	9	29;34	y	0.09	5	48.0	5	46;50	y	0.23	7	23.0	7	25;21	y	0.13	5	33.0	5	30;36	y	0.00	0	29.5	0	27;32	n	0.22	7	25.0	7	22;28	y	0.26	14	40.5	14	48;33	y	0.22	4	14.5	4	15;14	y	0.25	10	30.5	10	31;30	y	ENSMUSG00000013878.19	Rnf170	chr8	protein_coding	ring finger protein 170
known_NIR_18651	chr8	26629118	26630839	+	26629007	26630839	A5SS	ENSMUST00000110579.10	known	0.81	17	4	17	4	y	0.86	12	2	12	2	y	0.88	42	6	42	6	y	0.93	37	3	37	3	y	0.89	40	5	40	5	y	0.94	16	1	16	1	n	0.87	46	7	46	7	y	1.00	32	0	32	0	n	0.87	26	4	26	4	y	1.00	33	0	33	0	n	0.97	29	1	29	1	n	0.95	40	2	40	2	y	ENSMUSG00000013878.19	Rnf170	chr8	protein_coding	ring finger protein 170
known_NIR_18652	chr8	26648549	26650803	+	26648549	26649126	3pMXE	ENSMUST00000127536.2	known	1.00	14	0	14	0	n	1.00	12	0	12	0	n	0.91	20	2	20	2	y	1.00	9	0	9	0	n	1.00	12	0	12	0	n	1.00	11	0	11	0	n	1.00	13	0	13	0	n	1.00	18	0	18	0	n	1.00	13	0	13	0	n	1.00	20	0	20	0	n	1.00	8	0	8	0	n	1.00	21	0	21	0	n	ENSMUSG00000037214.13	Thap1	chr8	protein_coding	THAP domain containing, apoptosis associated protein 1
known_NIR_18653	chr8	26648549	26650803	+	26649178	26650803	5pMXE	ENSMUST00000209926.2	known	1.00	14	0	14	0	n	0.80	12	3	12	3	y	1.00	20	0	20	0	n	1.00	9	0	9	0	n	0.92	12	1	12	1	n	0.92	11	1	11	1	n	0.81	13	3	13	3	y	1.00	18	0	18	0	n	1.00	13	0	13	0	n	0.91	20	2	20	2	y	1.00	8	0	8	0	n	1.00	21	0	21	0	n	ENSMUSG00000037214.13	Thap1	chr8	protein_coding	THAP domain containing, apoptosis associated protein 1
known_NIR_18654	chr8	27467639	27468596	+	27468423	27468596	5pMXE	ENSMUST00000209411.2	known	1.00	13	0	13	0	n	0.80	8	2	8	2	y	1.00	13	0	13	0	n	0.82	9	2	9	2	y	0.82	9	2	9	2	y	1.00	4	0	4	0	n	0.73	8	3	8	3	y	0.80	4	1	4	1	n	0.67	2	1	2	1	n	0.93	13	1	13	1	n	1.00	10	0	10	0	n	1.00	8	0	8	0	n	ENSMUSG00000085795.9	Zfp703	chr8	protein_coding	zinc finger protein 703
known_NIR_18655	chr8	27514193	27515085	+	27513934	27515085	A5SS	ENSMUST00000033873.9	known	0.00	0	19	0	19	n	0.15	3	17	3	17	y	0.20	7	28	7	28	y	0.15	6	34	6	34	y	0.19	8	34	8	34	y	0.19	3	13	3	13	y	0.18	6	27	6	27	y	0.21	5	19	5	19	y	0.00	0	14	0	14	n	0.18	6	27	6	27	y	0.09	2	20	2	20	y	0.20	6	24	6	24	y	ENSMUSG00000031483.9	Erlin2	chr8	protein_coding	ER lipid raft associated 2
known_NIR_18656	chr8	27535163	27535952	+	27535163	27535426	A3SS&ES	ENSMUST00000211490.2	known	0.04	5	123	5	123	y	0.00	0	96	0	96	n	0.05	7	144	7	144	y	0.02	3	182	3	182	y	0.02	3	184	3	184	y	0.04	4	88	4	88	y	0.02	3	130	3	130	y	0.06	4	68	4	68	y	0.00	0	96	0	96	n	0.02	3	176	3	176	y	0.01	1	136	1	136	n	0.01	1	198	1	198	n	ENSMUSG00000031485.16	Plpbp	chr8	protein_coding	pyridoxal phosphate binding protein
known_NIR_18657	chr8	27535163	27535952	+	27535163;27535461	27535426;27535952	ES	ENSMUST00000033875.10	known	0.04	5	125.5	5	123;128	y	0.00	0	97.5	0	96;99	n	0.05	7	137.5	7	144;131	y	0.02	3	172.0	3	182;162	y	0.02	3	180.0	3	184;176	y	0.05	4	84.0	4	88;80	y	0.02	3	128.5	3	130;127	y	0.05	4	71.0	4	68;74	y	0.00	0	94.0	0	96;92	n	0.02	3	169.5	3	176;163	y	0.01	1	138.0	1	136;140	n	0.01	1	192.5	1	198;187	n	ENSMUSG00000031485.16	Plpbp	chr8	protein_coding	pyridoxal phosphate binding protein
known_NIR_18658	chr8	27535163	27535952	+	27535461	27535952	5pMXE	ENSMUST00000210225.2	known	0.04	5	128	5	128	y	0.00	0	99	0	99	n	0.05	7	131	7	131	y	0.02	3	162	3	162	y	0.02	3	176	3	176	y	0.05	4	80	4	80	y	0.02	3	127	3	127	y	0.05	4	74	4	74	y	0.00	0	92	0	92	n	0.02	3	163	3	163	y	0.01	1	140	1	140	n	0.01	1	187	1	187	n	ENSMUSG00000031485.16	Plpbp	chr8	protein_coding	pyridoxal phosphate binding protein
known_NIR_18659	chr8	27614648	27615478	-	27614648	27615848	A5SS	ENSMUST00000033877.6	known	0.03	1	28	1	28	n	0.09	2	21	2	21	y	0.10	2	19	2	19	y	0.00	0	28	0	28	n	0.06	2	32	2	32	y	0.00	0	10	0	10	n	0.13	3	20	3	20	y	0.00	0	17	0	17	n	0.00	0	13	0	13	n	0.10	3	26	3	26	y	0.00	0	25	0	25	n	0.08	2	22	2	22	y	ENSMUSG00000031487.6	Brf2	chr8	protein_coding	BRF2, RNA polymerase III transcription initiation factor 50kDa subunit
known_NIR_18660	chr8	27617547	27618253	-	27617547	27618449	A5SS	ENSMUST00000033877.6	known	0.00	0	20	0	20	n	0.00	0	14	0	14	n	0.08	3	36	3	36	y	0.04	1	24	1	24	n	0.00	0	29	0	29	n	0.00	0	15	0	15	n	0.07	3	37	3	37	y	0.00	0	8	0	8	n	0.00	0	24	0	24	n	0.00	0	25	0	25	n	0.00	0	20	0	20	n	0.00	0	23	0	23	n	ENSMUSG00000031487.6	Brf2	chr8	protein_coding	BRF2, RNA polymerase III transcription initiation factor 50kDa subunit
known_NIR_18661	chr8	27633422;27639122	27639064;27640723	-	27633422	27640723	cassetteExon	ENSMUST00000054212.7	known	0.00	0.0	10	0;0	10	n	0.00	0.0	15	0;0	15	n	0.06	1.0	15	1;1	15	n	0.02	0.5	24	0;1	24	n	0.02	0.5	20	0;1	20	n	0.00	0.0	7	0;0	7	n	0.12	2.5	18	3;2	18	y	0.00	0.0	9	0;0	9	n	0.03	0.5	14	1;0	14	n	0.04	0.5	11	1;0	11	n	0.00	0.0	15	0;0	15	n	0.02	0.5	20	0;1	20	n	ENSMUSG00000031488.15	Rab11fip1	chr8	protein_coding	RAB11 family interacting protein 1 (class I)
known_NIR_18662	chr8	27640831	27641625	-	27640831	27644174	A5SS	ENSMUST00000033878.14	known	0.00	0	5	0	5	n	0.13	2	13	2	13	y	0.11	2	16	2	16	y	0.00	0	17	0	17	n	0.13	3	20	3	20	y	0.22	2	7	2	7	n	0.13	2	13	2	13	y	0.06	1	16	1	16	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.18	3	14	3	14	y	0.08	1	12	1	12	n	ENSMUSG00000031488.15	Rab11fip1	chr8	protein_coding	RAB11 family interacting protein 1 (class I)
known_NIR_18663	chr8	27640831	27644174	-	27640831;27643187	27641625;27644174	ES	ENSMUST00000054212.7	known	0.83	5	1.0	5	0;2	n	0.93	13	1.0	13	2;0	n	0.86	16	2.5	16	2;3	y	0.94	17	1.0	17	0;2	n	0.93	20	1.5	20	3;0	n	0.82	7	1.5	7	2;1	n	0.90	13	1.5	13	2;1	n	0.97	16	0.5	16	1;0	n	0.80	4	1.0	4	0;2	n	0.96	12	0.5	12	0;1	n	0.85	14	2.5	14	3;2	y	0.89	12	1.5	12	1;2	n	ENSMUSG00000031488.15	Rab11fip1	chr8	protein_coding	RAB11 family interacting protein 1 (class I)
known_NIR_18664	chr8	27643187	27644174	-	27640831	27644174	A3SS	ENSMUST00000033878.14	known	0.29	2	5	2	5	n	0.00	0	13	0	13	n	0.16	3	16	3	16	y	0.11	2	17	2	17	y	0.00	0	20	0	20	n	0.12	1	7	1	7	n	0.07	1	13	1	13	n	0.00	0	16	0	16	n	0.33	2	4	2	4	n	0.08	1	12	1	12	n	0.12	2	14	2	14	y	0.14	2	12	2	12	y	ENSMUSG00000031488.15	Rab11fip1	chr8	protein_coding	RAB11 family interacting protein 1 (class I)
known_NIR_18665	chr8	27716497	27716754	-	27716556	27716754	A3SS	ENSMUST00000081438.10	known	1.00	15	0	15	0	n	0.87	13	2	13	2	y	0.40	4	6	4	6	y	0.67	10	5	10	5	y	0.70	7	3	7	3	y	1.00	2	0	2	0	n	0.89	16	2	16	2	y	0.67	6	3	6	3	n	1.00	4	0	4	0	n	0.50	4	4	4	4	n	1.00	5	0	5	0	n	0.43	3	4	3	4	n	ENSMUSG00000031489.16	Adrb3	chr8	protein_coding	adrenergic receptor, beta 3
known_NIR_18666	chr8	27716924	27717285	-	27716821	27717285	A3SS	ENSMUST00000081438.10	known	0.08	2	24	2	24	y	0.21	6	22	6	22	y	0.17	2	10	2	10	y	0.10	2	19	2	19	y	0.06	1	16	1	16	n	0.12	1	7	1	7	n	0.15	4	23	4	23	y	0.00	0	20	0	20	n	0.00	0	17	0	17	n	0.00	0	19	0	19	n	0.17	2	10	2	10	y	0.10	1	9	1	9	n	ENSMUSG00000031489.16	Adrb3	chr8	protein_coding	adrenergic receptor, beta 3
known_NIR_18667	chr8	27757117	27763351	+	27750578	27763351	A5SS	ENSMUST00000033880.7	known	0.00	0	314	0	314	n	0.00	0	351	0	351	n	0.00	1	498	1	498	n	0.00	0	360	0	360	n	0.00	0	461	0	461	n	0.01	2	174	2	174	y	0.00	0	517	0	517	n	0.00	0	191	0	191	n	0.00	1	251	1	251	n	0.00	0	434	0	434	n	0.00	0	335	0	335	n	0.00	0	329	0	329	n	ENSMUSG00000031490.7	Eif4ebp1	chr8	protein_coding	eukaryotic translation initiation factor 4E binding protein 1
known_NIR_18668	chr8	31650015	31651819	+	31650077	31651819	A5SS	ENSMUST00000098842.3	known	-	-	-	-	-	-	0.00	0	9	0	9	n	1.00	1	0	1	0	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.40	2	3	2	3	n	0.20	2	8	2	8	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000031577.11	Tti2	chr8	protein_coding	TELO2 interacting protein 2
known_NIR_18669	chr8	3224888;3231737	3231702;3234951	-	3224888	3234951	cassetteExon	ENSMUST00000091291.5	known	1.00	37.5	0	34;41	0	n	0.97	31.5	1	32;31	1	n	0.95	86.5	5	87;86	5	y	1.00	76.5	0	77;76	0	n	0.93	85.5	6	86;85	6	y	1.00	45.0	0	45;45	0	n	0.95	75.0	4	80;70	4	y	1.00	60.0	0	57;63	0	n	0.95	41.5	2	43;40	2	y	1.00	62.5	0	60;65	0	n	1.00	37.0	0	40;34	0	n	1.00	64.0	0	61;67	0	n	ENSMUSG00000005534.11	Insr	chr8	protein_coding	insulin receptor
known_NIR_18670	chr8	34143807	34159181	+	34142598	34159181	A5SS	ENSMUST00000154745.8	known	1.00	62	0	62	0	n	1.00	65	0	65	0	n	0.99	188	2	188	2	y	1.00	104	0	104	0	n	1.00	144	0	144	0	n	0.99	99	1	99	1	n	1.00	86	0	86	0	n	1.00	46	0	46	0	n	1.00	83	0	83	0	n	1.00	139	0	139	0	n	1.00	107	0	107	0	n	1.00	111	0	111	0	n	ENSMUSG00000031584.17	Gsr	chr8	protein_coding	glutathione reductase
known_NIR_18671	chr8	34222157	34225762	+	34222016	34225762	A5SS	ENSMUST00000170705.8	known	1.00	9	0	9	0	n	0.85	11	2	11	2	y	1.00	21	0	21	0	n	0.93	14	1	14	1	n	0.59	10	7	10	7	y	0.57	4	3	4	3	n	0.80	12	3	12	3	y	0.92	12	1	12	1	n	0.78	14	4	14	4	y	0.75	9	3	9	3	y	0.50	3	3	3	3	n	0.89	17	2	17	2	y	ENSMUSG00000031585.14	Gtf2e2	chr8	protein_coding	general transcription factor II E, polypeptide 2 (beta subunit)
known_NIR_18672	chr8	34222543	34225762	+	34222157	34225762	A5SS	ENSMUST00000167264.8	known	0.00	0	9	0	9	n	0.27	4	11	4	11	y	0.00	0	21	0	21	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.33	2	4	2	4	n	0.20	3	12	3	12	y	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.25	1	3	1	3	n	0.00	0	17	0	17	n	ENSMUSG00000031585.14	Gtf2e2	chr8	protein_coding	general transcription factor II E, polypeptide 2 (beta subunit)
known_NIR_18673	chr8	34222662	34225762	+	34222157	34225762	A5SS	ENSMUST00000167264.8	known	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.09	2	21	2	21	y	0.07	1	14	1	14	n	0.00	0	10	0	10	n	0.33	2	4	2	4	n	0.00	0	12	0	12	n	0.14	2	12	2	12	y	0.00	0	14	0	14	n	0.10	1	9	1	9	n	0.00	0	3	0	3	n	0.11	2	17	2	17	y	ENSMUSG00000031585.14	Gtf2e2	chr8	protein_coding	general transcription factor II E, polypeptide 2 (beta subunit)
known_NIR_18674	chr8	34274214;34279523	34279420;34285110	-	34274214	34285110	cassetteExon	ENSMUST00000053251.12	known	0.72	49.5	19	44;55	19	y	0.53	51.0	45	47;55	45	y	0.46	63.5	75	58;69	75	y	0.55	43.5	36	38;49	36	y	0.44	61.5	78	55;68	78	y	0.58	33.0	24	30;36	24	y	0.60	85.5	58	79;92	58	y	0.44	30.0	38	26;34	38	y	0.59	49.5	34	53;46	34	y	0.62	79.5	49	62;97	49	y	0.56	73.5	58	66;81	58	y	0.58	65.5	48	63;68	48	y	ENSMUSG00000031586.18	Rbpms	chr8	protein_coding	RNA binding protein gene with multiple splicing
known_NIR_18675	chr8	34285178	34296745	-	34285178	34286902	5pMXE	ENSMUST00000183122.2	known	0.99	79	1	79	1	n	0.94	94	6	94	6	y	0.99	147	1	147	1	n	0.98	95	2	95	2	y	0.99	158	2	158	2	y	0.93	55	4	55	4	y	0.97	141	5	141	5	y	0.92	78	7	78	7	y	0.96	75	3	75	3	y	0.94	132	8	132	8	y	0.98	122	3	122	3	y	1.00	128	0	128	0	n	ENSMUSG00000031586.18	Rbpms	chr8	protein_coding	RNA binding protein gene with multiple splicing
known_NIR_18676	chr8	34285178	34324332	-	34285178;34296878	34296745;34324332	ES	ENSMUST00000053251.12	known	0.01	1	87.0	1	79;95	n	0.00	0	127.5	0	94;161	n	0.00	0	191.0	0	147;235	n	0.04	4	104.5	4	95;114	y	0.02	3	174.0	3	158;190	y	0.00	0	80.0	0	55;105	n	0.01	2	183.0	2	141;225	y	0.00	0	89.0	0	78;100	n	0.00	0	102.5	0	75;130	n	0.00	0	142.0	0	132;152	n	0.00	0	149.5	0	122;177	n	0.01	2	154.5	2	128;181	y	ENSMUSG00000031586.18	Rbpms	chr8	protein_coding	RNA binding protein gene with multiple splicing
known_NIR_18677	chr8	34285178	34324332	-	34296878	34324332	3pMXE	ENSMUST00000183062.2	known	0.01	1	95	1	95	n	0.00	0	161	0	161	n	0.00	0	235	0	235	n	0.03	4	114	4	114	y	0.02	3	190	3	190	y	0.00	0	105	0	105	n	0.01	2	225	2	225	y	0.00	0	100	0	100	n	0.00	0	130	0	130	n	0.00	0	152	0	152	n	0.00	0	177	0	177	n	0.01	2	181	2	181	y	ENSMUSG00000031586.18	Rbpms	chr8	protein_coding	RNA binding protein gene with multiple splicing
known_NIR_18678	chr8	34285178;34287031	34286902;34296745	-	34285178	34296745	cassetteExon	ENSMUST00000053251.12	known	0.02	2.0	79	1;3	79	n	0.05	4.5	94	6;3	94	y	0.01	1.0	147	1;1	147	n	0.04	3.5	95	2;5	95	y	0.01	2.0	158	2;2	158	y	0.08	4.5	55	4;5	55	y	0.02	3.5	141	5;2	141	y	0.08	6.5	78	7;6	78	y	0.04	3.0	75	3;3	75	y	0.03	4.0	132	8;0	132	n	0.02	2.5	122	3;2	122	y	0.05	6.5	128	0;13	128	n	ENSMUSG00000031586.18	Rbpms	chr8	protein_coding	RNA binding protein gene with multiple splicing
known_NIR_18679	chr8	34294210	34296745	-	34285178	34296745	A3SS	ENSMUST00000053251.12	known	0.44	63	79	63	79	y	0.43	70	94	70	94	y	0.28	58	147	58	147	y	0.30	41	95	41	95	y	0.33	78	158	78	158	y	0.42	40	55	40	55	y	0.33	70	141	70	141	y	0.28	31	78	31	78	y	0.35	40	75	40	75	y	0.38	81	132	81	132	y	0.38	74	122	74	122	y	0.35	68	128	68	128	y	ENSMUSG00000031586.18	Rbpms	chr8	protein_coding	RNA binding protein gene with multiple splicing
known_NIR_18680	chr8	34294210	34296745	-	34287031	34296745	A3SS	ENSMUST00000183336.8	known	0.95	63	3	63	3	y	0.96	70	3	70	3	y	0.98	58	1	58	1	n	0.89	41	5	41	5	y	0.97	78	2	78	2	y	0.89	40	5	40	5	y	0.97	70	2	70	2	y	0.84	31	6	31	6	y	0.93	40	3	40	3	y	1.00	81	0	81	0	n	0.97	74	2	74	2	y	0.84	68	13	68	13	y	ENSMUSG00000031586.18	Rbpms	chr8	protein_coding	RNA binding protein gene with multiple splicing
known_NIR_18681	chr8	34564448;34566255	34566073;34573496	-	34564448	34573496	cassetteExon	ENSMUST00000033913.11	known	0.07	3.5	46	5;2	46	y	0.07	4.0	55	5;3	55	y	0.12	6.0	44	8;4	44	y	0.05	2.0	36	1;3	36	n	0.10	5.5	49	9;2	49	y	0.07	3.0	41	1;5	41	n	0.22	11.5	41	13;10	41	y	0.14	5.5	34	4;7	34	y	0.08	3.5	42	4;3	42	y	0.08	4.5	53	8;1	53	n	0.08	3.0	34	3;3	34	y	0.06	5.5	90	1;10	90	n	ENSMUSG00000031516.12	Dctn6	chr8	protein_coding	dynactin 6
known_NIR_18682	chr8	34564448;34566255	34566073;34573496	-	34564448;34572252	34572140;34573496	MXE	ENSMUST00000117243.8	known	0.44	3.5	4.5	5;2	6;3	y	0.47	4.0	4.5	5;3	8;1	n	0.48	6.0	6.5	8;4	7;6	y	0.50	2.0	2.0	1;3	3;1	n	0.46	5.5	6.5	9;2	7;6	y	0.25	3.0	9.0	1;5	11;7	n	0.55	11.5	9.5	13;10	14;5	y	0.58	5.5	4.0	4;7	5;3	y	0.70	3.5	1.5	4;3	3;0	n	0.32	4.5	9.5	8;1	13;6	n	0.32	3.0	6.5	3;3	9;4	y	0.79	5.5	1.5	1;10	3;0	n	ENSMUSG00000031516.12	Dctn6	chr8	protein_coding	dynactin 6
known_NIR_18683	chr8	34564448;34572193	34572140;34573496	-	34564448	34573496	cassetteExon	ENSMUST00000033913.11	known	0.07	3.5	46	6;1	46	n	0.11	7.0	55	8;6	55	y	0.14	7.0	44	7;7	44	y	0.04	1.5	36	3;0	36	n	0.09	5.0	49	7;3	49	y	0.18	9.0	41	11;7	41	y	0.23	12.0	41	14;10	41	y	0.13	5.0	34	5;5	34	y	0.03	1.5	42	3;0	42	n	0.16	10.0	53	13;7	53	y	0.14	5.5	34	9;2	34	y	0.04	3.5	90	3;4	90	y	ENSMUSG00000031516.12	Dctn6	chr8	protein_coding	dynactin 6
known_NIR_18684	chr8	34564448;34572193	34572140;34573496	-	34564448;34566255	34566073;34573496	MXE	ENSMUST00000131839.8	known	0.50	3.5	3.5	6;1	5;2	n	0.64	7.0	4.0	8;6	5;3	y	0.54	7.0	6.0	7;7	8;4	y	0.43	1.5	2.0	3;0	1;3	n	0.48	5.0	5.5	7;3	9;2	y	0.75	9.0	3.0	11;7	1;5	n	0.51	12.0	11.5	14;10	13;10	y	0.48	5.0	5.5	5;5	4;7	y	0.30	1.5	3.5	3;0	4;3	n	0.69	10.0	4.5	13;7	8;1	n	0.65	5.5	3.0	9;2	3;3	y	0.39	3.5	5.5	3;4	1;10	n	ENSMUSG00000031516.12	Dctn6	chr8	protein_coding	dynactin 6
known_NIR_18685	chr8	34564448;34572252	34572140;34573496	-	34564448	34573496	cassetteExon	ENSMUST00000033913.11	known	0.09	4.5	46	6;3	46	y	0.08	4.5	55	8;1	55	n	0.13	6.5	44	7;6	44	y	0.05	2.0	36	3;1	36	n	0.12	6.5	49	7;6	49	y	0.18	9.0	41	11;7	41	y	0.19	9.5	41	14;5	41	y	0.11	4.0	34	5;3	34	y	0.03	1.5	42	3;0	42	n	0.15	9.5	53	13;6	53	y	0.16	6.5	34	9;4	34	y	0.02	1.5	90	3;0	90	n	ENSMUSG00000031516.12	Dctn6	chr8	protein_coding	dynactin 6
known_NIR_18686	chr8	34572193	34573496	-	34572252	34573496	A3SS	ENSMUST00000117243.8	known	0.25	1	3	1	3	n	0.86	6	1	6	1	n	0.54	7	6	7	6	y	0.00	0	1	0	1	n	0.33	3	6	3	6	n	0.50	7	7	7	7	y	0.67	10	5	10	5	y	0.62	5	3	5	3	n	-	-	-	-	-	-	0.54	7	6	7	6	y	0.33	2	4	2	4	n	1.00	4	0	4	0	n	ENSMUSG00000031516.12	Dctn6	chr8	protein_coding	dynactin 6
known_NIR_18687	chr8	3513746	3513922	-	3510334	3513922	A3SS	ENSMUST00000004686.13	known	0.01	2	216	2	216	y	0.01	2	198	2	198	y	0.02	4	227	4	227	y	0.03	6	218	6	218	y	0.03	10	307	10	307	y	0.00	1	233	1	233	n	0.01	3	302	3	302	y	0.01	2	181	2	181	y	0.00	1	211	1	211	n	0.01	4	308	4	308	y	0.02	4	225	4	225	y	0.01	3	238	3	238	y	ENSMUSG00000069633.13	Pex11g	chr8	protein_coding	peroxisomal biogenesis factor 11 gamma
known_NIR_18688	chr8	3514100	3517572	-	3514100;3515971	3515783;3517572	ES	ENSMUST00000004686.13	known	0.03	5	163.0	5	161;165	y	0.12	19	142.0	19	156;128	y	0.09	20	196.0	20	237;155	y	0.04	8	171.0	8	199;143	y	0.07	21	279.0	21	330;228	y	0.05	9	160.5	9	190;131	y	0.05	11	224.5	11	283;166	y	0.07	12	157.5	12	185;130	y	0.05	8	152.5	8	182;123	y	0.05	12	248.5	12	292;205	y	0.02	3	186.5	3	220;153	y	0.09	17	182.5	17	222;143	y	ENSMUSG00000069633.13	Pex11g	chr8	protein_coding	peroxisomal biogenesis factor 11 gamma
known_NIR_18689	chr8	3555943	3556909	+	3555943	3557149	A3SS	ENSMUST00000004683.13	known	0.00	0	54	0	54	n	0.00	0	45	0	45	n	0.04	2	44	2	44	y	0.00	0	91	0	91	n	0.00	0	82	0	82	n	0.00	0	39	0	39	n	0.00	0	65	0	65	n	0.00	0	55	0	55	n	0.00	0	53	0	53	n	0.00	0	100	0	100	n	0.00	0	76	0	76	n	0.00	0	91	0	91	n	ENSMUSG00000004567.17	Mcoln1	chr8	protein_coding	mucolipin 1
known_NIR_18690	chr8	3555943	3557149	+	3555943	3562650	A3SS	ENSMUST00000208306.2	known	0.95	54	3	54	3	y	1.00	45	0	45	0	n	1.00	44	0	44	0	n	1.00	91	0	91	0	n	1.00	82	0	82	0	n	1.00	39	0	39	0	n	0.98	65	1	65	1	n	1.00	55	0	55	0	n	1.00	53	0	53	0	n	0.99	100	1	100	1	n	1.00	76	0	76	0	n	1.00	91	0	91	0	n	ENSMUSG00000004567.17	Mcoln1	chr8	protein_coding	mucolipin 1
known_NIR_18691	chr8	3561810	3562650	+	3555943	3562650	A5SS	ENSMUST00000208306.2	known	0.96	72	3	72	3	y	1.00	88	0	88	0	n	1.00	78	0	78	0	n	1.00	82	0	82	0	n	1.00	93	0	93	0	n	1.00	58	0	58	0	n	0.99	95	1	95	1	n	1.00	51	0	51	0	n	1.00	73	0	73	0	n	0.99	127	1	127	1	n	1.00	98	0	98	0	n	1.00	104	0	104	0	n	ENSMUSG00000004567.17	Mcoln1	chr8	protein_coding	mucolipin 1
known_NIR_18692	chr8	3565556	3566507	+	3565556	3566510	A3SS	ENSMUST00000111070.4	known	0.25	1	3	1	3	n	0.38	3	5	3	5	n	0.71	10	4	10	4	y	0.67	2	1	2	1	n	0.60	6	4	6	4	y	0.50	2	2	2	2	n	0.60	3	2	3	2	n	0.60	6	4	6	4	y	1.00	3	0	3	0	n	1.00	7	0	7	0	n	0.67	4	2	4	2	n	0.73	11	4	11	4	y	ENSMUSG00000004565.16	Pnpla6	chr8	protein_coding	patatin-like phospholipase domain containing 6
known_NIR_18693	chr8	3565556	3566681	+	3565556;3566568	3566510;3566681	ES	ENSMUST00000111070.4	known	0.42	4	5.5	4	3;8	y	0.47	4	4.5	4	5;4	y	0.62	13	8.0	13	4;12	y	0.63	13	7.5	13	1;14	n	0.51	10	9.5	10	4;15	y	0.22	1	3.5	1	2;5	n	0.38	5	8.0	5	2;14	y	0.44	7	9.0	7	4;14	y	0.53	4	3.5	4	0;7	n	0.38	4	6.5	4	0;13	n	0.18	1	4.5	1	2;7	n	0.34	7	13.5	7	4;23	y	ENSMUSG00000004565.16	Pnpla6	chr8	protein_coding	patatin-like phospholipase domain containing 6
known_NIR_18694	chr8	3565556	3566681	+	3566568	3566681	A5SS&ES	ENSMUST00000207146.2	known	0.33	4	8	4	8	y	0.50	4	4	4	4	n	0.52	13	12	13	12	y	0.48	13	14	13	14	y	0.40	10	15	10	15	y	0.17	1	5	1	5	n	0.26	5	14	5	14	y	0.33	7	14	7	14	y	0.36	4	7	4	7	y	0.24	4	13	4	13	y	0.12	1	7	1	7	n	0.23	7	23	7	23	y	ENSMUSG00000004565.16	Pnpla6	chr8	protein_coding	patatin-like phospholipase domain containing 6
known_NIR_18695	chr8	3565556;3566568	3566507;3566681	+	3565556	3566681	cassetteExon	ENSMUST00000004681.14	known	0.53	4.5	4	1;8	4	n	0.47	3.5	4	3;4	4	y	0.46	11.0	13	10;12	13	y	0.38	8.0	13	2;14	13	y	0.51	10.5	10	6;15	10	y	0.78	3.5	1	2;5	1	n	0.63	8.5	5	3;14	5	y	0.59	10.0	7	6;14	7	y	0.56	5.0	4	3;7	4	y	0.71	10.0	4	7;13	4	y	0.85	5.5	1	4;7	1	n	0.71	17.0	7	11;23	7	y	ENSMUSG00000004565.16	Pnpla6	chr8	protein_coding	patatin-like phospholipase domain containing 6
known_NIR_18696	chr8	3573867	3574011	+	3573867	3573999	A3SS	ENSMUST00000111070.4	known	0.75	27	9	27	9	y	0.42	10	14	10	14	y	0.73	19	7	19	7	y	0.62	13	8	13	8	y	0.69	20	9	20	9	y	0.75	12	4	12	4	y	0.81	17	4	17	4	y	0.84	21	4	21	4	y	0.68	15	7	15	7	y	0.79	22	6	22	6	y	0.79	15	4	15	4	y	0.65	17	9	17	9	y	ENSMUSG00000004565.16	Pnpla6	chr8	protein_coding	patatin-like phospholipase domain containing 6
known_NIR_18697	chr8	3574329	3574948	+	3574329	3580962	A3SS	ENSMUST00000111070.4	known	0.00	0	33	0	33	n	0.00	0	12	0	12	n	0.04	1	22	1	22	n	0.03	1	31	1	31	n	0.05	2	38	2	38	y	0.00	0	11	0	11	n	0.04	1	22	1	22	n	0.00	0	27	0	27	n	0.06	1	15	1	15	n	0.05	2	36	2	36	y	0.00	0	21	0	21	n	0.00	0	34	0	34	n	ENSMUSG00000004565.16	Pnpla6	chr8	protein_coding	patatin-like phospholipase domain containing 6
known_NIR_18698	chr8	35842959	35851138	+	35843095	35851138	A5SS	ENSMUST00000210337.2	known	0.20	13	53	13	53	y	0.26	11	32	11	32	y	0.32	6	13	6	13	y	0.21	15	57	15	57	y	0.17	14	68	14	68	y	0.65	11	6	11	6	y	0.28	15	38	15	38	y	0.36	8	14	8	14	y	0.24	9	29	9	29	y	0.23	18	61	18	61	y	0.26	14	39	14	39	y	0.36	12	21	12	21	y	ENSMUSG00000046794.10	Ppp1r3b	chr8	protein_coding	protein phosphatase 1, regulatory subunit 3B
known_NIR_18699	chr8	35843907	35851138	+	35843095	35851138	A5SS	ENSMUST00000210337.2	known	0.53	59	53	59	53	y	0.53	36	32	36	32	y	0.72	33	13	33	13	y	0.53	65	57	65	57	y	0.50	68	68	68	68	y	0.74	17	6	17	6	y	0.57	50	38	50	38	y	0.62	23	14	23	14	y	0.40	19	29	19	29	y	0.49	58	61	58	61	y	0.30	17	39	17	39	y	0.59	30	21	30	21	y	ENSMUSG00000046794.10	Ppp1r3b	chr8	protein_coding	protein phosphatase 1, regulatory subunit 3B
known_NIR_18700	chr8	3587520	3587767	+	3587520	3587969	A3SS	ENSMUST00000208851.2	known	0.00	0	29	0	29	n	0.04	2	49	2	49	y	0.24	11	34	11	34	y	0.07	3	37	3	37	y	0.04	2	51	2	51	y	0.15	2	11	2	11	y	0.06	2	34	2	34	y	0.11	4	31	4	31	y	0.00	0	20	0	20	n	0.00	0	30	0	30	n	0.06	2	32	2	32	y	0.10	4	36	4	36	y	ENSMUSG00000004565.16	Pnpla6	chr8	protein_coding	patatin-like phospholipase domain containing 6
known_NIR_18701	chr8	3587520;3587883	3587767;3591291	+	3587520;3588085	3587969;3591291	MXE	ENSMUST00000111070.4	known	0.04	1.5	32.0	0;3	29;35	n	0.05	2.0	36.5	2;2	49;24	y	0.20	7.0	28.0	11;3	34;22	y	0.07	2.5	31.0	3;2	37;25	y	0.02	1.0	41.5	2;0	51;32	n	0.16	2.0	10.5	2;2	11;10	y	0.12	4.0	29.0	2;6	34;24	y	0.07	2.0	27.0	4;0	31;23	n	0.05	1.0	18.5	0;2	20;17	n	0.02	0.5	27.0	0;1	30;24	n	0.06	1.5	24.5	2;1	32;17	n	0.07	2.0	27.5	4;0	36;19	n	ENSMUSG00000004565.16	Pnpla6	chr8	protein_coding	patatin-like phospholipase domain containing 6
known_NIR_18702	chr8	3587883	3591291	+	3588085	3591291	5pMXE	ENSMUST00000207336.2	known	0.08	3	35	3	35	y	0.08	2	24	2	24	y	0.12	3	22	3	22	y	0.07	2	25	2	25	y	0.00	0	32	0	32	n	0.17	2	10	2	10	y	0.20	6	24	6	24	y	0.00	0	23	0	23	n	0.11	2	17	2	17	y	0.04	1	24	1	24	n	0.06	1	17	1	17	n	0.00	0	19	0	19	n	ENSMUSG00000004565.16	Pnpla6	chr8	protein_coding	patatin-like phospholipase domain containing 6
known_NIR_18703	chr8	36058240	36131822	+	36058512	36131822	A5SS	ENSMUST00000037666.6	known	0.14	5	31	5	31	y	0.00	0	20	0	20	n	0.00	0	13	0	13	n	0.04	2	47	2	47	y	0.00	0	36	0	36	n	0.23	3	10	3	10	y	0.00	0	26	0	26	n	0.00	0	18	0	18	n	0.04	1	25	1	25	n	0.00	0	31	0	31	n	0.00	0	33	0	33	n	0.09	3	29	3	29	y	ENSMUSG00000070056.7	Mfhas1	chr8	protein_coding	malignant fibrous histiocytoma amplified sequence 1
known_NIR_18704	chr8	36131948;36138985	36138876;36143884	+	36131948	36143884	cassetteExon	ENSMUST00000037666.6	known	0.12	7.5	53	8;7	53	y	0.10	2.5	23	0;5	23	n	0.12	2.5	18	2;3	18	y	0.06	3.5	52	4;3	52	y	0.11	6.0	47	4;8	47	y	0.03	0.5	17	0;1	17	n	0.11	3.5	27	6;1	27	n	0.03	0.5	18	1;0	18	n	0.14	5.5	34	7;4	34	y	0.10	5.5	48	7;4	48	y	0.07	3.5	44	4;3	44	y	0.15	6.0	33	5;7	33	y	ENSMUSG00000070056.7	Mfhas1	chr8	protein_coding	malignant fibrous histiocytoma amplified sequence 1
known_NIR_18705	chr8	3638229	3647842	+	3637959	3647842	A5SS	ENSMUST00000057028.15	known	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.08	2	22	2	22	y	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.25	2	6	2	6	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	ENSMUSG00000044433.17	Camsap3	chr8	protein_coding	calmodulin regulated spectrin-associated protein family, member 3
known_NIR_18706	chr8	3648988;3650405	3650358;3650676	+	3648988	3650676	cassetteExon	ENSMUST00000057028.15	known	0.11	1.5	12	1;2	12	n	0.12	1.5	11	2;1	11	n	0.07	1.0	13	0;2	13	n	0.26	3.5	10	2;5	10	y	0.06	2.0	32	2;2	32	y	0.18	2.0	9	1;3	9	n	0.20	2.0	8	2;2	8	y	0.07	0.5	7	0;1	7	n	0.26	2.5	7	3;2	7	y	0.11	2.5	21	3;2	21	y	0.05	0.5	9	1;0	9	n	0.14	3.0	18	3;3	18	y	ENSMUSG00000044433.17	Camsap3	chr8	protein_coding	calmodulin regulated spectrin-associated protein family, member 3
known_NIR_18707	chr8	3652279	3652368	+	3652279	3652371	A3SS	ENSMUST00000057028.15	known	0.33	5	10	5	10	y	0.27	6	16	6	16	y	0.35	7	13	7	13	y	0.37	7	12	7	12	y	0.33	9	18	9	18	y	0.36	5	9	5	9	y	0.55	6	5	6	5	y	0.57	8	6	8	6	y	0.24	4	13	4	13	y	0.50	11	11	11	11	y	0.28	7	18	7	18	y	0.27	4	11	4	11	y	ENSMUSG00000044433.17	Camsap3	chr8	protein_coding	calmodulin regulated spectrin-associated protein family, member 3
known_NIR_18708	chr8	3671695	3672342	+	3671611	3672342	A5SS	ENSMUST00000208950.2	known	0.03	4	151	4	151	y	0.02	3	131	3	131	y	0.01	1	122	1	122	n	0.04	5	119	5	119	y	0.01	1	153	1	153	n	0.02	2	106	2	106	y	0.02	4	199	4	199	y	0.02	2	80	2	80	y	0.00	0	111	0	111	n	0.04	7	181	7	181	y	0.02	3	151	3	151	y	0.01	1	150	1	150	n	ENSMUSG00000087687.4	Pet100	chr8	protein_coding	PET100 homolog
known_NIR_18709	chr8	3681204	3683291	+	3682581	3683291	A5SS&ES	ENSMUST00000159888.8	known	0.00	0	79	0	79	n	0.00	0	66	0	66	n	0.03	3	95	3	95	y	0.00	0	64	0	64	n	0.00	0	95	0	95	n	0.00	0	27	0	27	n	0.00	0	92	0	92	n	0.00	0	52	0	52	n	0.00	0	83	0	83	n	0.00	0	105	0	105	n	0.00	0	60	0	60	n	0.01	1	80	1	80	n	ENSMUSG00000004626.15	Stxbp2	chr8	protein_coding	syntaxin binding protein 2
known_NIR_18710	chr8	3681204;3682581	3682220;3683291	+	3681204	3683291	cassetteExon	ENSMUST00000163044.2	known	1.00	55.0	0	31;79	0	n	1.00	47.0	0	28;66	0	n	0.96	65.0	3	35;95	3	y	1.00	47.0	0	30;64	0	n	1.00	63.0	0	31;95	0	n	1.00	19.5	0	12;27	0	n	1.00	64.0	0	36;92	0	n	1.00	32.5	0	13;52	0	n	1.00	52.5	0	22;83	0	n	1.00	64.0	0	23;105	0	n	1.00	42.0	0	24;60	0	n	0.98	52.0	1	24;80	1	n	ENSMUSG00000004626.15	Stxbp2	chr8	protein_coding	syntaxin binding protein 2
known_NIR_18711	chr8	3681278	3682220	+	3681204	3682220	A5SS	ENSMUST00000160708.8	known	0.06	2	31	2	31	y	0.12	4	28	4	28	y	0.19	8	35	8	35	y	0.06	2	30	2	30	y	0.16	6	31	6	31	y	0.25	4	12	4	12	y	0.25	12	36	12	36	y	0.07	1	13	1	13	n	0.08	2	22	2	22	y	0.21	6	23	6	23	y	0.17	5	24	5	24	y	0.00	0	24	0	24	n	ENSMUSG00000004626.15	Stxbp2	chr8	protein_coding	syntaxin binding protein 2
known_NIR_18712	chr8	3683367	3683831	+	3683367	3683848	A3SS	ENSMUST00000160708.8	known	0.00	0	63	0	63	n	0.00	0	47	0	47	n	0.04	3	78	3	78	y	0.00	0	83	0	83	n	0.00	0	104	0	104	n	0.00	0	46	0	46	n	0.00	0	94	0	94	n	0.00	0	51	0	51	n	0.00	0	55	0	55	n	0.00	0	89	0	89	n	0.00	0	61	0	61	n	0.01	1	93	1	93	n	ENSMUSG00000004626.15	Stxbp2	chr8	protein_coding	syntaxin binding protein 2
known_NIR_18713	chr8	3684123	3685446	+	3684123	3684475	3pMXE	ENSMUST00000162737.8	known	0.00	0	52	0	52	n	0.00	0	41	0	41	n	0.05	3	56	3	56	y	0.02	1	49	1	49	n	0.00	0	58	0	58	n	0.00	0	43	0	43	n	0.00	0	62	0	62	n	0.00	0	40	0	40	n	0.00	0	35	0	35	n	0.00	0	65	0	65	n	0.04	2	54	2	54	y	0.00	0	54	0	54	n	ENSMUSG00000004626.15	Stxbp2	chr8	protein_coding	syntaxin binding protein 2
known_NIR_18714	chr8	3684123	3685446	+	3684123;3684623	3684475;3685446	ES	ENSMUST00000160708.8	known	0.00	0	53.0	0	52;54	n	0.00	0	50.0	0	41;59	n	0.04	3	68.0	3	56;80	y	0.02	1	57.0	1	49;65	n	0.00	0	62.5	0	58;67	n	0.00	0	41.0	0	43;39	n	0.00	0	73.5	0	62;85	n	0.00	0	40.0	0	40;40	n	0.00	0	40.5	0	35;46	n	0.00	0	69.0	0	65;73	n	0.03	2	56.5	2	54;59	y	0.00	0	62.0	0	54;70	n	ENSMUSG00000004626.15	Stxbp2	chr8	protein_coding	syntaxin binding protein 2
known_NIR_18715	chr8	3691820	3691895	+	3691820	3691898	A3SS	ENSMUST00000160708.8	known	0.12	13	97	13	97	y	0.23	22	75	22	75	y	0.09	9	93	9	93	y	0.16	16	85	16	85	y	0.16	21	110	21	110	y	0.15	7	39	7	39	y	0.30	36	85	36	85	y	0.25	13	40	13	40	y	0.09	9	94	9	94	y	0.18	23	103	23	103	y	0.23	24	79	24	79	y	0.22	22	77	22	77	y	ENSMUSG00000004626.15	Stxbp2	chr8	protein_coding	syntaxin binding protein 2
known_NIR_18716	chr8	37066594	37199742	-	37066594	37080713	5pMXE	ENSMUST00000033923.14	known	0.10	1	9	1	9	n	0.17	1	5	1	5	n	0.00	0	9	0	9	n	0.13	2	13	2	13	y	0.25	1	3	1	3	n	0.00	0	7	0	7	n	0.09	1	10	1	10	n	0.00	0	8	0	8	n	0.23	3	10	3	10	y	0.25	5	15	5	15	y	0.16	3	16	3	16	y	0.10	2	18	2	18	y	ENSMUSG00000031523.17	Dlc1	chr8	protein_coding	deleted in liver cancer 1
known_NIR_18717	chr8	3767827	3768345	-	3767827	3768342	A5SS	ENSMUST00000062037.7	known	0.00	0	142	0	142	n	0.01	1	138	1	138	n	0.00	0	58	0	58	n	0.03	3	117	3	117	y	0.00	1	205	1	205	n	0.00	0	63	0	63	n	0.00	0	172	0	172	n	0.04	3	70	3	70	y	0.03	2	72	2	72	y	0.02	3	175	3	175	y	0.04	5	123	5	123	y	0.00	0	91	0	91	n	ENSMUSG00000074491.10	Clec4g	chr8	protein_coding	C-type lectin domain family 4, member g
known_NIR_18718	chr8	39538670	39593683	+	39538670;39564168	39564079;39593683	ES	ENSMUST00000239508.1	known	0.14	3	18.0	3	17;19	y	0.13	4	27.5	4	30;25	y	0.00	0	48.0	0	46;50	n	0.13	5	32.5	5	33;32	y	0.02	1	54.5	1	56;53	n	0.05	3	52.0	3	51;53	y	0.03	2	58.0	2	58;58	y	0.05	2	37.0	2	40;34	y	0.00	0	25.5	0	20;31	n	0.08	4	44.0	4	42;46	y	0.00	0	27.0	0	22;32	n	0.14	7	44.0	7	45;43	y	ENSMUSG00000118664.1	Tusc3	chr8	protein_coding	--
known_NIR_18719	chr8	40059023	40061126	-	40042519	40061126	A3SS	ENSMUST00000026021.14	known	0.80	20	5	20	5	y	0.94	17	1	17	1	n	0.91	32	3	32	3	y	0.75	9	3	9	3	y	0.79	37	10	37	10	y	0.82	14	3	14	3	y	0.68	17	8	17	8	y	1.00	12	0	12	0	n	0.93	13	1	13	1	n	0.79	15	4	15	4	y	0.90	9	1	9	1	n	0.64	7	4	7	4	y	ENSMUSG00000025044.17	Msr1	chr8	protein_coding	macrophage scavenger receptor 1
known_NIR_18720	chr8	40077376	40084322	-	40080795	40084322	A3SS&ES	ENSMUST00000210525.2	known	1.00	10	0	10	0	n	1.00	7	0	7	0	n	0.95	41	2	41	2	y	1.00	8	0	8	0	n	1.00	37	0	37	0	n	1.00	18	0	18	0	n	1.00	25	0	25	0	n	1.00	13	0	13	0	n	1.00	12	0	12	0	n	1.00	10	0	10	0	n	1.00	12	0	12	0	n	1.00	14	0	14	0	n	ENSMUSG00000025044.17	Msr1	chr8	protein_coding	macrophage scavenger receptor 1
known_NIR_18721	chr8	40077376;40080795	40080740;40084322	-	40077376	40084322	cassetteExon	ENSMUST00000026021.14	known	0.00	0.0	10	0;0	10	n	0.00	0.0	7	0;0	7	n	0.07	3.0	41	4;2	41	y	0.00	0.0	8	0;0	8	n	0.00	0.0	37	0;0	37	n	0.00	0.0	18	0;0	18	n	0.00	0.0	25	0;0	25	n	0.00	0.0	13	0;0	13	n	0.00	0.0	12	0;0	12	n	0.00	0.0	10	0;0	10	n	0.00	0.0	12	0;0	12	n	0.00	0.0	14	0;0	14	n	ENSMUSG00000025044.17	Msr1	chr8	protein_coding	macrophage scavenger receptor 1
known_NIR_18722	chr8	40947156	40952336	-	40947156;40948956	40948846;40952336	ES	ENSMUST00000034012.10	known	0.00	0	55.0	0	42;68	n	0.00	0	40.5	0	31;50	n	0.03	2	77.5	2	54;101	y	0.02	1	57.0	1	45;69	n	0.00	0	57.5	0	45;70	n	0.00	0	36.0	0	30;42	n	0.04	3	80.0	3	67;93	y	0.00	0	52.0	0	46;58	n	0.00	0	38.5	0	39;38	n	0.00	0	72.5	0	53;92	n	0.02	1	53.0	1	44;62	n	0.00	0	73.0	0	59;87	n	ENSMUSG00000031601.17	Cnot7	chr8	protein_coding	CCR4-NOT transcription complex, subunit 7
known_NIR_18723	chr8	40947156	40952336	-	40948956	40952336	3pMXE	ENSMUST00000132740.2	known	0.00	0	68	0	68	n	0.00	0	50	0	50	n	0.02	2	101	2	101	y	0.01	1	69	1	69	n	0.00	0	70	0	70	n	0.00	0	42	0	42	n	0.03	3	93	3	93	y	0.00	0	58	0	58	n	0.00	0	38	0	38	n	0.00	0	92	0	92	n	0.02	1	62	1	62	n	0.00	0	87	0	87	n	ENSMUSG00000031601.17	Cnot7	chr8	protein_coding	CCR4-NOT transcription complex, subunit 7
known_NIR_18724	chr8	41316087	41351974	+	41315594	41351974	A5SS	ENSMUST00000098816.10	known	0.03	3	91	3	91	y	0.02	1	53	1	53	n	0.05	7	134	7	134	y	0.01	2	236	2	236	y	0.02	4	186	4	186	y	0.08	7	77	7	77	y	0.00	0	113	0	113	n	0.03	3	109	3	109	y	0.02	3	124	3	124	y	0.01	1	170	1	170	n	0.00	0	95	0	95	n	0.03	11	356	11	356	y	ENSMUSG00000031596.16	Slc7a2	chr8	protein_coding	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2
known_NIR_18725	chr8	41358764;41361571	41361435;41364032	+	41358764;41361232	41361093;41364032	MXE	ENSMUST00000098816.10	known	1.00	184.5	0.0	183;186	0;0	n	0.99	119.0	1.0	121;117	2;0	n	0.99	183.5	2.0	203;164	2;2	y	0.99	316.5	2.0	322;311	4;0	n	0.99	231.0	1.5	219;243	3;0	n	0.99	138.0	2.0	144;132	2;2	y	1.00	213.5	0.0	217;210	0;0	n	1.00	147.5	0.0	150;145	0;0	n	0.99	195.5	1.0	193;198	2;0	n	0.99	297.0	2.5	313;281	5;0	n	0.99	157.5	1.0	158;157	2;0	n	0.99	518.5	5.5	511;526	9;2	y	ENSMUSG00000031596.16	Slc7a2	chr8	protein_coding	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2
known_NIR_18726	chr8	41468491	41469238	-	41468491	41475417	A5SS	ENSMUST00000059115.13	known	0.00	0	183	0	183	n	0.00	0	183	0	183	n	0.02	4	206	4	206	y	0.00	1	232	1	232	n	0.00	0	376	0	376	n	0.01	1	132	1	132	n	0.00	1	294	1	294	n	0.00	0	181	0	181	n	0.00	0	214	0	214	n	0.00	0	302	0	302	n	0.00	0	169	0	169	n	0.00	0	280	0	280	n	ENSMUSG00000045636.17	Mtus1	chr8	protein_coding	mitochondrial tumor suppressor 1
known_NIR_18727	chr8	41468491	41469568	-	41468491	41475417	A5SS	ENSMUST00000059115.13	known	0.03	5	183	5	183	y	0.00	0	183	0	183	n	0.01	3	206	3	206	y	0.00	0	232	0	232	n	0.01	2	376	2	376	y	0.06	9	132	9	132	y	0.01	2	294	2	294	y	0.03	5	181	5	181	y	0.00	0	214	0	214	n	0.01	3	302	3	302	y	0.00	0	169	0	169	n	0.00	1	280	1	280	n	ENSMUSG00000045636.17	Mtus1	chr8	protein_coding	mitochondrial tumor suppressor 1
known_NIR_18728	chr8	41468491	41469723	-	41468491	41475417	A5SS	ENSMUST00000059115.13	known	0.00	0	183	0	183	n	0.00	0	183	0	183	n	0.01	2	206	2	206	y	0.00	0	232	0	232	n	0.00	0	376	0	376	n	0.00	0	132	0	132	n	0.00	0	294	0	294	n	0.00	0	181	0	181	n	0.00	0	214	0	214	n	0.00	0	302	0	302	n	0.00	0	169	0	169	n	0.00	0	280	0	280	n	ENSMUSG00000045636.17	Mtus1	chr8	protein_coding	mitochondrial tumor suppressor 1
known_NIR_18729	chr8	41472131	41475417	-	41468491	41475417	A3SS	ENSMUST00000059115.13	known	0.00	0	183	0	183	n	0.00	0	183	0	183	n	0.00	0	206	0	206	n	0.00	0	232	0	232	n	0.01	2	376	2	376	y	0.00	0	132	0	132	n	0.00	0	294	0	294	n	0.00	0	181	0	181	n	0.00	0	214	0	214	n	0.00	0	302	0	302	n	0.00	0	169	0	169	n	0.00	0	280	0	280	n	ENSMUSG00000045636.17	Mtus1	chr8	protein_coding	mitochondrial tumor suppressor 1
known_NIR_18730	chr8	41475631	41494510	-	41475631	41501085	A5SS	ENSMUST00000059115.13	known	0.01	2	144	2	144	y	0.02	2	95	2	95	y	0.04	6	135	6	135	y	0.02	3	186	3	186	y	0.02	6	282	6	282	y	0.02	2	94	2	94	y	0.02	5	212	5	212	y	0.06	7	113	7	113	y	0.01	1	131	1	131	n	0.02	5	215	5	215	y	0.02	3	135	3	135	y	0.01	2	191	2	191	y	ENSMUSG00000045636.17	Mtus1	chr8	protein_coding	mitochondrial tumor suppressor 1
known_NIR_18731	chr8	41503153;41509721	41509572;41529269	-	41503153	41529269	cassetteExon	ENSMUST00000059115.13	known	0.25	30.0	91	32;28	91	y	0.29	22.0	55	23;21	55	y	0.14	16.5	101	12;21	101	y	0.27	37.5	104	37;38	104	y	0.25	54.5	165	59;50	165	y	0.19	14.5	63	14;15	63	y	0.24	41.5	128	51;32	128	y	0.21	25.0	95	22;28	95	y	0.25	30.5	92	37;24	92	y	0.24	36.5	114	44;29	114	y	0.21	23.0	85	24;22	85	y	0.21	27.5	103	30;25	103	y	ENSMUSG00000045636.17	Mtus1	chr8	protein_coding	mitochondrial tumor suppressor 1
known_NIR_18732	chr8	41537877	41567577	-	41537877	41586518	A5SS	ENSMUST00000059115.13	known	0.00	0	63	0	63	n	0.05	2	39	2	39	y	0.00	0	75	0	75	n	0.00	0	102	0	102	n	0.00	0	157	0	157	n	0.00	0	48	0	48	n	0.00	0	90	0	90	n	0.00	0	46	0	46	n	0.00	0	70	0	70	n	0.00	0	92	0	92	n	0.00	0	55	0	55	n	0.00	0	99	0	99	n	ENSMUSG00000045636.17	Mtus1	chr8	protein_coding	mitochondrial tumor suppressor 1
known_NIR_18733	chr8	41537877	41586698	-	41537877	41586518	A5SS	ENSMUST00000059115.13	known	0.05	3	63	3	63	y	0.03	1	39	1	39	n	0.04	3	75	3	75	y	0.04	4	102	4	102	y	0.03	5	157	5	157	y	0.00	0	48	0	48	n	0.02	2	90	2	90	y	0.04	2	46	2	46	y	0.00	0	70	0	70	n	0.02	2	92	2	92	y	0.00	0	55	0	55	n	0.03	3	99	3	99	y	ENSMUSG00000045636.17	Mtus1	chr8	protein_coding	mitochondrial tumor suppressor 1
known_NIR_18734	chr8	41711073	41712173	+	41711073	41712074	A3SS	ENSMUST00000211090.2	known	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.19	4	17	4	17	y	0.08	1	11	1	11	n	0.04	1	23	1	23	n	0.22	4	14	4	14	y	0.06	1	15	1	15	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.14	2	12	2	12	y	ENSMUSG00000031592.11	Pcm1	chr8	protein_coding	pericentriolar material 1
known_NIR_18735	chr8	41714218	41720224	+	41714218;41714513	41714397;41720224	ES	ENSMUST00000211090.2	known	0.20	1	4.0	1	5;3	n	0.44	4	5.0	4	5;5	y	0.39	11	17.5	11	14;21	y	0.25	2	6.0	2	7;5	y	0.15	3	17.5	3	17;18	y	0.00	0	7.0	0	8;6	n	0.00	0	11.0	0	8;14	n	0.15	1	5.5	1	6;5	n	0.57	4	3.0	4	4;2	y	0.18	2	9.0	2	9;9	y	0.46	3	3.5	3	4;3	y	0.33	3	6.0	3	4;8	y	ENSMUSG00000031592.11	Pcm1	chr8	protein_coding	pericentriolar material 1
known_NIR_18736	chr8	41813336	41827543	-	41813336	41827547	A5SS	ENSMUST00000034000.15	known	0.06	4	60	4	60	y	0.00	0	46	0	46	n	0.03	3	102	3	102	y	0.04	3	82	3	82	y	0.00	0	152	0	152	n	0.03	2	73	2	73	y	0.01	1	89	1	89	n	0.05	4	77	4	77	y	0.01	1	77	1	77	n	0.06	6	98	6	98	y	0.05	3	63	3	63	y	0.02	2	84	2	84	y	ENSMUSG00000031591.15	Asah1	chr8	protein_coding	N-acylsphingosine amidohydrolase 1
known_NIR_18737	chr8	4243366	4250868	+	4243366	4243549	3pMXE	ENSMUST00000239400.2	known	0.82	9	2	9	2	y	0.71	5	2	5	2	n	0.86	12	2	12	2	y	1.00	5	0	5	0	n	0.80	12	3	12	3	y	0.00	0	2	0	2	n	0.79	11	3	11	3	y	1.00	1	0	1	0	n	1.00	4	0	4	0	n	0.56	10	8	10	8	y	0.33	2	4	2	4	n	0.80	8	2	8	2	y	ENSMUSG00000011832.17	Evi5l	chr8	protein_coding	ecotropic viral integration site 5 like
known_NIR_18738	chr8	4250921	4252936	+	4250921;4251966	4251934;4252936	ES	ENSMUST00000176149.9	known	1.00	8	0.0	8	0;0	n	1.00	7	0.0	7	0;0	n	0.77	5	1.5	5	3;0	n	0.00	0	1.5	0	2;1	n	1.00	9	0.0	9	0;0	n	0.00	0	1.0	0	1;1	n	0.75	9	3.0	9	2;4	y	0.57	2	1.5	2	1;2	n	0.80	2	0.5	2	0;1	n	1.00	5	0.0	5	0;0	n	1.00	4	0.0	4	0;0	n	1.00	5	0.0	5	0;0	n	ENSMUSG00000011832.17	Evi5l	chr8	protein_coding	ecotropic viral integration site 5 like
known_NIR_18739	chr8	4289033;4290735	4290688;4293304	+	4289033	4293304	cassetteExon	ENSMUST00000110998.9	known	0.06	1.5	23	2;1	23	n	0.13	3.0	20	5;1	20	n	0.27	12.0	33	13;11	33	y	0.07	2.0	28	3;1	28	n	0.11	4.5	36	4;5	36	y	0.29	7.5	18	9;6	18	y	0.41	12.0	17	14;10	17	y	0.14	4.5	28	5;4	28	y	0.11	3.0	24	2;4	24	y	0.15	6.0	35	5;7	35	y	0.09	1.5	16	1;2	16	n	0.14	5.0	30	5;5	30	y	ENSMUSG00000002948.20	Map2k7	chr8	protein_coding	mitogen-activated protein kinase kinase 7
known_NIR_18740	chr8	4303651	4304282	+	4303304	4304282	A5SS	ENSMUST00000011981.5	known	0.09	3	29	3	29	y	0.38	12	20	12	20	y	0.05	1	19	1	19	n	0.14	4	25	4	25	y	0.29	14	35	14	35	y	0.23	3	10	3	10	y	0.12	4	29	4	29	y	0.28	7	18	7	18	y	0.22	4	14	4	14	y	0.13	5	34	5	34	y	0.11	4	33	4	33	y	0.26	7	20	7	20	y	ENSMUSG00000011837.5	Snapc2	chr8	protein_coding	small nuclear RNA activating complex, polypeptide 2
known_NIR_18741	chr8	4318016	4318300	-	4318013	4318300	A3SS	ENSMUST00000149827.8	known	0.04	4	95	4	95	y	0.00	0	80	0	80	n	0.05	6	117	6	117	y	0.02	2	112	2	112	y	0.04	5	109	5	109	y	0.12	5	38	5	38	y	0.03	4	133	4	133	y	0.06	3	48	3	48	y	0.05	6	113	6	113	y	0.03	4	136	4	136	y	0.02	2	122	2	122	y	0.02	3	158	3	158	y	ENSMUSG00000002949.16	Timm44	chr8	protein_coding	translocase of inner mitochondrial membrane 44
known_NIR_18742	chr8	4361786	4362557	-	4361786	4374886	A5SS	ENSMUST00000098950.6	known	0.10	1	9	1	9	n	0.00	0	17	0	17	n	0.07	3	37	3	37	y	0.04	1	25	1	25	n	0.05	3	52	3	52	y	0.00	0	20	0	20	n	0.03	1	29	1	29	n	0.05	1	21	1	21	n	0.00	0	16	0	16	n	0.07	2	26	2	26	y	0.17	4	19	4	19	y	0.03	1	28	1	28	n	ENSMUSG00000040028.11	Elavl1	chr8	protein_coding	ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R)
known_NIR_18743	chr8	4377850	4399772	+	4399655	4399772	A5SS&ES	ENSMUST00000127460.8	known	0.33	1	2	1	2	n	0.50	3	3	3	3	n	0.33	2	4	2	4	n	0.67	10	5	10	5	y	0.00	0	1	0	1	n	0.50	2	2	2	2	n	0.18	2	9	2	9	y	0.00	0	2	0	2	n	0.38	3	5	3	5	n	0.47	7	8	7	8	y	0.25	3	9	3	9	y	0.67	6	3	6	3	n	ENSMUSG00000023235.15	Ccl25	chr8	protein_coding	chemokine (C-C motif) ligand 25
known_NIR_18744	chr8	45498205	45503818	+	45498205	45502879	3pMXE	ENSMUST00000189367.2	known	0.95	36	2	36	2	y	0.89	31	4	31	4	y	0.92	95	8	95	8	y	0.95	41	2	41	2	y	0.93	71	5	71	5	y	0.89	49	6	49	6	y	0.94	33	2	33	2	y	0.93	42	3	42	3	y	0.92	24	2	24	2	y	0.98	49	1	49	1	n	0.92	45	4	45	4	y	0.92	56	5	56	5	y	ENSMUSG00000070047.15	Fat1	chr8	protein_coding	FAT atypical cadherin 1
known_NIR_18745	chr8	45498205;45502914	45502879;45503818	+	45498205	45503818	cassetteExon	ENSMUST00000191428.7	known	0.06	2.5	36	2;3	36	y	0.13	4.5	31	4;5	31	y	0.06	6.5	95	8;5	95	y	0.04	1.5	41	2;1	41	n	0.07	5.5	71	5;6	71	y	0.13	7.5	49	6;9	49	y	0.08	3.0	33	2;4	33	y	0.07	3.0	42	3;3	42	y	0.06	1.5	24	2;1	24	n	0.05	2.5	49	1;4	49	n	0.07	3.5	45	4;3	45	y	0.09	5.5	56	5;6	56	y	ENSMUSG00000070047.15	Fat1	chr8	protein_coding	FAT atypical cadherin 1
known_NIR_18746	chr8	45708403	45714979	-	45708403;45714118	45714063;45714979	ES	ENSMUST00000034064.5	known	0.09	8	84.5	8	90;79	y	0.04	3	70.5	3	71;70	y	0.05	18	323.5	18	341;306	y	0.06	9	130.5	9	135;126	y	0.08	19	208.0	19	214;202	y	0.05	12	243.0	12	264;222	y	0.09	13	135.5	13	127;144	y	0.06	19	306.5	19	322;291	y	0.06	6	90.5	6	73;108	y	0.11	15	123.0	15	121;125	y	0.06	4	62.5	4	66;59	y	0.09	9	92.0	9	96;88	y	ENSMUSG00000031645.5	F11	chr8	protein_coding	coagulation factor XI
known_NIR_18747	chr8	45794321	45795428	-	45794321	45795419	A5SS	ENSMUST00000135912.8	known	1.00	39	0	39	0	n	0.96	24	1	24	1	n	0.90	19	2	19	2	y	0.98	46	1	46	1	n	1.00	37	0	37	0	n	1.00	12	0	12	0	n	0.97	28	1	28	1	n	0.96	24	1	24	1	n	1.00	27	0	27	0	n	0.96	47	2	47	2	y	1.00	42	0	42	0	n	1.00	44	0	44	0	n	ENSMUSG00000070044.16	Fam149a	chr8	protein_coding	family with sequence similarity 149, member A
known_NIR_18748	chr8	45861772	45863157	-	45861772	45862833	A5SS&ES	ENSMUST00000209772.2	known	0.00	0	5	0	5	n	1.00	1	0	1	0	n	0.11	1	8	1	8	n	0.27	3	8	3	8	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.12	1	7	1	7	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.38	3	5	3	5	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	ENSMUSG00000031639.13	Tlr3	chr8	protein_coding	toll-like receptor 3
known_NIR_18749	chr8	46081309	46111840	+	46081309;46098889	46098798;46111840	ES	ENSMUST00000145458.9	known	0.70	14	6.0	14	7;5	y	0.40	5	7.5	5	7;8	y	0.52	39	35.5	39	34;37	y	0.60	20	13.5	20	16;11	y	0.63	43	25.0	43	23;27	y	0.63	18	10.5	18	11;10	y	0.69	22	10.0	22	14;6	y	0.49	18	18.5	18	21;16	y	0.70	27	11.5	27	10;13	y	0.53	19	17.0	19	19;15	y	0.65	17	9.0	17	8;10	y	0.55	22	18.0	22	14;22	y	ENSMUSG00000031626.19	Sorbs2	chr8	protein_coding	sorbin and SH3 domain containing 2
known_NIR_18750	chr8	46081309	46111840	+	46098889	46111840	A5SS&ES	ENSMUST00000132139.9	known	0.74	14	5	14	5	y	0.38	5	8	5	8	y	0.51	39	37	39	37	y	0.65	20	11	20	11	y	0.61	43	27	43	27	y	0.64	18	10	18	10	y	0.79	22	6	22	6	y	0.53	18	16	18	16	y	0.68	27	13	27	13	y	0.56	19	15	19	15	y	0.63	17	10	17	10	y	0.50	22	22	22	22	y	ENSMUSG00000031626.19	Sorbs2	chr8	protein_coding	sorbin and SH3 domain containing 2
known_NIR_18751	chr8	46111978;46147650	46147595;46189190	+	46111978	46189190	cassetteExon	ENSMUST00000067065.14	known	0.10	1.5	13	1;2	13	n	0.00	0.0	16	0;0	16	n	0.02	1.0	56	1;1	56	n	0.00	0.0	38	0;0	38	n	0.04	3.0	69	6;0	69	n	0.03	1.0	29	1;1	29	n	0.09	2.5	25	3;2	25	y	0.03	1.0	31	2;0	31	n	0.04	0.5	13	1;0	13	n	0.00	0.0	32	0;0	32	n	0.15	2.5	14	3;2	14	y	0.00	0.0	24	0;0	24	n	ENSMUSG00000031626.19	Sorbs2	chr8	protein_coding	sorbin and SH3 domain containing 2
known_NIR_18752	chr8	46141484	46189190	+	46111978	46189190	A5SS	ENSMUST00000067065.14	known	0.07	1	13	1	13	n	0.00	0	16	0	16	n	0.02	1	56	1	56	n	0.05	2	38	2	38	y	0.00	0	69	0	69	n	0.06	2	29	2	29	y	0.00	0	25	0	25	n	0.03	1	31	1	31	n	0.00	0	13	0	13	n	0.00	0	32	0	32	n	0.00	0	14	0	14	n	0.00	0	24	0	24	n	ENSMUSG00000031626.19	Sorbs2	chr8	protein_coding	sorbin and SH3 domain containing 2
known_NIR_18753	chr8	46189239	46194524	+	46189239	46212090	A3SS	ENSMUST00000211095.2	known	1.00	19	0	19	0	n	1.00	14	0	14	0	n	1.00	55	0	55	0	n	1.00	32	0	32	0	n	1.00	55	0	55	0	n	0.96	26	1	26	1	n	1.00	26	0	26	0	n	1.00	38	0	38	0	n	1.00	12	0	12	0	n	1.00	18	0	18	0	n	0.90	9	1	9	1	n	0.95	35	2	35	2	y	ENSMUSG00000031626.19	Sorbs2	chr8	protein_coding	sorbin and SH3 domain containing 2
known_NIR_18754	chr8	46189239	46198457	+	46189239;46194616	46194524;46198457	ES	ENSMUST00000067065.14	known	0.14	4	25.5	4	19;32	y	0.11	2	17.0	2	14;20	y	0.08	5	59.0	5	55;63	y	0.10	4	37.5	4	32;43	y	0.10	6	54.5	6	55;54	y	0.07	2	28.5	2	26;31	y	0.09	3	29.0	3	26;32	y	0.05	2	39.5	2	38;41	y	0.00	0	17.5	0	12;23	n	0.03	1	30.5	1	18;43	n	0.18	3	14.0	3	9;19	y	0.04	2	46.0	2	35;57	y	ENSMUSG00000031626.19	Sorbs2	chr8	protein_coding	sorbin and SH3 domain containing 2
known_NIR_18755	chr8	46189239;46198878	46198457;46212090	+	46189239	46212090	cassetteExon	ENSMUST00000211095.2	known	1.00	13.5	0	4;23	0	n	1.00	6.5	0	2;11	0	n	1.00	33.5	0	5;62	0	n	1.00	23.5	0	4;43	0	n	1.00	33.5	0	6;61	0	n	0.95	19.0	1	2;36	1	n	1.00	20.5	0	3;38	0	n	1.00	22.5	0	2;43	0	n	1.00	10.0	0	0;20	0	n	1.00	27.0	0	1;53	0	n	0.95	19.5	1	3;36	1	n	0.93	28.0	2	2;54	2	y	ENSMUSG00000031626.19	Sorbs2	chr8	protein_coding	sorbin and SH3 domain containing 2
known_NIR_18756	chr8	46198483	46198823	+	46198483	46198754	A3SS	ENSMUST00000067065.14	known	0.91	21	2	21	2	y	0.93	14	1	14	1	n	0.89	56	7	56	7	y	0.88	45	6	45	6	y	0.91	53	5	53	5	y	0.71	30	12	30	12	y	0.68	21	10	21	10	y	0.77	33	10	33	10	y	0.73	16	6	16	6	y	0.91	40	4	40	4	y	0.88	28	4	28	4	y	0.90	54	6	54	6	y	ENSMUSG00000031626.19	Sorbs2	chr8	protein_coding	sorbin and SH3 domain containing 2
known_NIR_18757	chr8	46222932	46225571	+	46222932;46223627	46223583;46225571	ES	ENSMUST00000067065.14	known	0.03	1	38.0	1	39;37	n	0.14	4	24.0	4	29;19	y	0.14	12	74.0	12	82;66	y	0.14	9	53.5	9	59;48	y	0.09	9	88.0	9	85;91	y	0.10	6	55.5	6	59;52	y	0.10	5	45.0	5	50;40	y	0.04	2	50.5	2	54;47	y	0.09	4	38.5	4	37;40	y	0.04	3	64.5	3	73;56	y	0.15	5	27.5	5	29;26	y	0.05	5	92.0	5	93;91	y	ENSMUSG00000031626.19	Sorbs2	chr8	protein_coding	sorbin and SH3 domain containing 2
known_NIR_18758	chr8	46222932	46225571	+	46223627	46225571	5pMXE	ENSMUST00000155858.8	known	0.03	1	37	1	37	n	0.17	4	19	4	19	y	0.15	12	66	12	66	y	0.16	9	48	9	48	y	0.09	9	91	9	91	y	0.10	6	52	6	52	y	0.11	5	40	5	40	y	0.04	2	47	2	47	y	0.09	4	40	4	40	y	0.05	3	56	3	56	y	0.16	5	26	5	26	y	0.05	5	91	5	91	y	ENSMUSG00000031626.19	Sorbs2	chr8	protein_coding	sorbin and SH3 domain containing 2
known_NIR_18759	chr8	46228740	46229440	+	46228740	46235839	A3SS	ENSMUST00000067065.14	known	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	49	0	49	n	0.00	0	15	0	15	n	0.00	0	27	0	27	n	0.00	0	22	0	22	n	0.00	0	30	0	30	n	0.00	0	31	0	31	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.19	4	17	4	17	y	ENSMUSG00000031626.19	Sorbs2	chr8	protein_coding	sorbin and SH3 domain containing 2
known_NIR_18760	chr8	46228740	46229440	+	46228740	46243013	A3SS	ENSMUST00000138049.9	known	0.00	0	25	0	25	n	0.00	0	18	0	18	n	0.00	0	40	0	40	n	0.00	0	35	0	35	n	0.00	0	54	0	54	n	0.00	0	30	0	30	n	0.00	0	30	0	30	n	0.00	0	38	0	38	n	0.00	0	25	0	25	n	0.00	0	44	0	44	n	0.00	0	21	0	21	n	0.11	4	33	4	33	y	ENSMUSG00000031626.19	Sorbs2	chr8	protein_coding	sorbin and SH3 domain containing 2
known_NIR_18761	chr8	46228740	46238306	+	46228740;46235997	46235839;46238306	ES	ENSMUST00000132139.9	known	0.25	1	3.0	1	4;2	n	0.00	0	6.5	0	10;3	n	0.03	1	34.0	1	49;19	n	0.00	0	11.0	0	15;7	n	0.14	3	18.0	3	27;9	y	0.00	0	15.0	0	22;8	n	0.06	1	17.0	1	30;4	n	0.00	0	20.5	0	31;10	n	0.31	4	9.0	4	10;8	y	0.10	1	9.0	1	14;4	n	0.00	0	5.0	0	8;2	n	0.00	0	11.5	0	17;6	n	ENSMUSG00000031626.19	Sorbs2	chr8	protein_coding	sorbin and SH3 domain containing 2
known_NIR_18762	chr8	46228740;46235997	46235839;46243013	+	46228740	46243013	cassetteExon	ENSMUST00000138049.9	known	0.11	3.0	25	4;2	25	y	0.22	5.0	18	10;0	18	n	0.38	24.5	40	49;0	40	n	0.20	8.5	35	15;2	35	y	0.21	14.5	54	27;2	54	y	0.27	11.0	30	22;0	30	n	0.35	16.5	30	30;3	30	y	0.32	17.5	38	31;4	38	y	0.17	5.0	25	10;0	25	n	0.15	7.5	44	14;1	44	n	0.16	4.0	21	8;0	21	n	0.21	9.0	33	17;1	33	n	ENSMUSG00000031626.19	Sorbs2	chr8	protein_coding	sorbin and SH3 domain containing 2
known_NIR_18763	chr8	46228740;46235997	46235839;46243013	+	46228740;46238362	46238306;46243013	MXE	ENSMUST00000171337.10	known	0.18	3.0	14.0	4;2	1;27	n	0.50	5.0	5.0	10;0	0;10	n	0.36	24.5	43.5	49;0	1;86	n	0.29	8.5	20.5	15;2	0;41	n	0.36	14.5	25.5	27;2	3;48	y	0.44	11.0	14.0	22;0	0;28	n	0.53	16.5	14.5	30;3	1;28	n	0.56	17.5	14.0	31;4	0;28	n	0.24	5.0	16.0	10;0	4;28	n	0.29	7.5	18.0	14;1	1;35	n	0.20	4.0	16.0	8;0	0;32	n	0.34	9.0	17.5	17;1	0;35	n	ENSMUSG00000031626.19	Sorbs2	chr8	protein_coding	sorbin and SH3 domain containing 2
known_NIR_18764	chr8	46228740;46238362	46238306;46243013	+	46228740	46243013	cassetteExon	ENSMUST00000138049.9	known	0.36	14.0	25	1;27	25	n	0.22	5.0	18	0;10	18	n	0.52	43.5	40	1;86	40	n	0.37	20.5	35	0;41	35	n	0.32	25.5	54	3;48	54	y	0.32	14.0	30	0;28	30	n	0.33	14.5	30	1;28	30	n	0.27	14.0	38	0;28	38	n	0.39	16.0	25	4;28	25	y	0.29	18.0	44	1;35	44	n	0.43	16.0	21	0;32	21	n	0.35	17.5	33	0;35	33	n	ENSMUSG00000031626.19	Sorbs2	chr8	protein_coding	sorbin and SH3 domain containing 2
known_NIR_18765	chr8	46235997	46238306	+	46235997;46236663	46236580;46238306	ES	ENSMUST00000067065.14	known	0.18	2	9.0	2	7;11	y	0.25	3	9.0	3	15;3	y	0.39	19	30.0	19	24;36	y	0.22	7	25.5	7	24;27	y	0.26	9	26.0	9	22;30	y	0.40	8	12.0	8	12;12	y	0.20	4	16.5	4	19;14	y	0.34	10	19.0	10	18;20	y	0.43	8	10.5	8	6;15	y	0.20	4	16.5	4	20;13	y	0.12	2	14.0	2	12;16	y	0.17	6	28.5	6	36;21	y	ENSMUSG00000031626.19	Sorbs2	chr8	protein_coding	sorbin and SH3 domain containing 2
known_NIR_18766	chr8	46235997	46243013	+	46235997;46238362	46238306;46243013	ES	ENSMUST00000132139.9	known	0.12	2	14.5	2	2;27	y	0.00	0	6.5	0	3;10	n	0.00	0	52.5	0	19;86	n	0.08	2	24.0	2	7;41	y	0.07	2	28.5	2	9;48	y	0.00	0	18.0	0	8;28	n	0.16	3	16.0	3	4;28	y	0.17	4	19.0	4	10;28	y	0.00	0	18.0	0	8;28	n	0.05	1	19.5	1	4;35	n	0.00	0	17.0	0	2;32	n	0.05	1	20.5	1	6;35	n	ENSMUSG00000031626.19	Sorbs2	chr8	protein_coding	sorbin and SH3 domain containing 2
known_NIR_18767	chr8	46235997;46236663	46236580;46243013	+	46235997;46238362	46238306;46243013	MXE	ENSMUST00000132139.9	known	0.19	3.5	14.5	7;0	2;27	n	0.54	7.5	6.5	15;0	3;10	n	0.20	13.5	52.5	24;3	19;86	y	0.33	12.0	24.0	24;0	7;41	n	0.28	11.0	28.5	22;0	9;48	n	0.25	6.0	18.0	12;0	8;28	n	0.37	9.5	16.0	19;0	4;28	n	0.32	9.0	19.0	18;0	10;28	n	0.14	3.0	18.0	6;0	8;28	n	0.35	10.5	19.5	20;1	4;35	n	0.26	6.0	17.0	12;0	2;32	n	0.47	18.5	20.5	36;1	6;35	n	ENSMUSG00000031626.19	Sorbs2	chr8	protein_coding	sorbin and SH3 domain containing 2
known_NIR_18768	chr8	46236663	46238306	+	46228740	46238306	A5SS	ENSMUST00000171337.10	known	0.92	11	1	11	1	n	1.00	3	0	3	0	n	0.97	36	1	36	1	n	1.00	27	0	27	0	n	0.91	30	3	30	3	y	1.00	12	0	12	0	n	0.93	14	1	14	1	n	1.00	20	0	20	0	n	0.79	15	4	15	4	y	0.93	13	1	13	1	n	1.00	16	0	16	0	n	1.00	21	0	21	0	n	ENSMUSG00000031626.19	Sorbs2	chr8	protein_coding	sorbin and SH3 domain containing 2
known_NIR_18769	chr8	46236663	46243013	+	46228740	46243013	A5SS	ENSMUST00000138049.9	known	0.00	0	25	0	25	n	0.00	0	18	0	18	n	0.07	3	40	3	40	y	0.00	0	35	0	35	n	0.00	0	54	0	54	n	0.00	0	30	0	30	n	0.00	0	30	0	30	n	0.00	0	38	0	38	n	0.00	0	25	0	25	n	0.02	1	44	1	44	n	0.00	0	21	0	21	n	0.03	1	33	1	33	n	ENSMUSG00000031626.19	Sorbs2	chr8	protein_coding	sorbin and SH3 domain containing 2
known_NIR_18770	chr8	46236663	46243013	+	46236663;46238362	46238306;46243013	ES	ENSMUST00000067065.14	known	0.00	0	19.0	0	11;27	n	0.00	0	6.5	0	3;10	n	0.05	3	61.0	3	36;86	y	0.00	0	34.0	0	27;41	n	0.00	0	39.0	0	30;48	n	0.00	0	20.0	0	12;28	n	0.00	0	21.0	0	14;28	n	0.00	0	24.0	0	20;28	n	0.00	0	21.5	0	15;28	n	0.04	1	24.0	1	13;35	n	0.00	0	24.0	0	16;32	n	0.03	1	28.0	1	21;35	n	ENSMUSG00000031626.19	Sorbs2	chr8	protein_coding	sorbin and SH3 domain containing 2
known_NIR_18771	chr8	46236663	46243013	+	46238362	46243013	A5SS&ES	ENSMUST00000171337.10	known	0.00	0	27	0	27	n	0.00	0	10	0	10	n	0.03	3	86	3	86	y	0.00	0	41	0	41	n	0.00	0	48	0	48	n	0.00	0	28	0	28	n	0.00	0	28	0	28	n	0.00	0	28	0	28	n	0.00	0	28	0	28	n	0.03	1	35	1	35	n	0.00	0	32	0	32	n	0.03	1	35	1	35	n	ENSMUSG00000031626.19	Sorbs2	chr8	protein_coding	sorbin and SH3 domain containing 2
known_NIR_18772	chr8	46252838	46254002	+	46252835	46254002	A5SS	ENSMUST00000067065.14	known	0.30	14	33	14	33	y	0.29	12	29	12	29	y	0.25	25	76	25	76	y	0.35	27	51	27	51	y	0.16	15	77	15	77	y	0.35	19	35	19	35	y	0.20	16	66	16	66	y	0.30	21	48	21	48	y	0.32	15	32	15	32	y	0.31	19	43	19	43	y	0.43	18	24	18	24	y	0.36	24	43	24	43	y	ENSMUSG00000031626.19	Sorbs2	chr8	protein_coding	sorbin and SH3 domain containing 2
known_NIR_18773	chr8	46263228	46272756	+	46258890	46272756	A5SS	ENSMUST00000067065.14	known	0.01	1	71	1	71	n	0.00	0	48	0	48	n	0.01	2	147	2	147	y	0.00	0	82	0	82	n	0.00	0	134	0	134	n	0.00	0	76	0	76	n	0.00	0	93	0	93	n	0.00	0	99	0	99	n	0.00	0	70	0	70	n	0.00	0	78	0	78	n	0.00	0	52	0	52	n	0.00	0	95	0	95	n	ENSMUSG00000031626.19	Sorbs2	chr8	protein_coding	sorbin and SH3 domain containing 2
known_NIR_18774	chr8	46272805	46276796	+	46272805	46276766	A3SS	ENSMUST00000067065.14	known	0.17	11	54	11	54	y	0.18	10	47	10	47	y	0.18	23	105	23	105	y	0.14	12	74	12	74	y	0.12	16	113	16	113	y	0.13	9	62	9	62	y	0.16	11	57	11	57	y	0.18	13	61	13	61	y	0.21	11	41	11	41	y	0.20	12	49	12	49	y	0.14	8	50	8	50	y	0.11	11	91	11	91	y	ENSMUSG00000031626.19	Sorbs2	chr8	protein_coding	sorbin and SH3 domain containing 2
known_NIR_18775	chr8	46353596	46362056	+	46353596	46361506	A3SS&ES	ENSMUST00000034053.7	known	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.94	49	3	49	3	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000031636.8	Pdlim3	chr8	protein_coding	PDZ and LIM domain 3
known_NIR_18776	chr8	46353596;46361693	46361506;46368166	+	46353596;46366997	46362056;46368166	MXE	ENSMUST00000210422.2	known	1.00	0.5	0.0	0;1	0;0	n	1.00	0.5	0.0	1;0	0;0	n	1.00	0.5	0.0	1;0	0;0	n	-	-	-	-	-	-	1.00	2.0	0.0	2;2	0;0	n	-	-	-	-	-	-	0.14	9.0	57.0	3;15	49;65	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1.0	0.0	1;1	0;0	n	-	-	-	-	-	-	1.00	0.5	0.0	1;0	0;0	n	ENSMUSG00000031636.8	Pdlim3	chr8	protein_coding	PDZ and LIM domain 3
known_NIR_18777	chr8	46366997	46368166	+	46361693	46368166	A5SS	ENSMUST00000034053.7	known	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.81	65	15	65	15	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031636.8	Pdlim3	chr8	protein_coding	PDZ and LIM domain 3
known_NIR_18778	chr8	46428835	46432246	+	46428625	46432246	A5SS	ENSMUST00000034051.7	known	0.00	0	69	0	69	n	0.05	1	20	1	20	n	0.03	3	107	3	107	y	0.02	1	64	1	64	n	0.09	7	75	7	75	y	0.07	5	63	5	63	y	0.00	0	84	0	84	n	0.02	1	50	1	50	n	0.00	0	41	0	41	n	0.04	3	73	3	73	y	0.03	2	56	2	56	y	0.04	3	67	3	67	y	ENSMUSG00000031634.14	Ufsp2	chr8	protein_coding	UFM1-specific peptidase 2
known_NIR_18779	chr8	46433504	46433610	+	46433529	46433610	A5SS	ENSMUST00000034051.7	known	0.06	5	76	5	76	y	0.03	2	58	2	58	y	0.04	6	151	6	151	y	0.04	4	110	4	110	y	0.07	9	123	9	123	y	0.02	2	90	2	90	y	0.01	1	107	1	107	n	0.02	2	102	2	102	y	0.01	1	75	1	75	n	0.03	4	116	4	116	y	0.01	1	84	1	84	n	0.05	6	113	6	113	y	ENSMUSG00000031634.14	Ufsp2	chr8	protein_coding	UFM1-specific peptidase 2
known_NIR_18780	chr8	46433529	46437078	+	46433529	46433610	3pMXE	ENSMUST00000123041.8	known	0.00	0	76	0	76	n	0.00	0	58	0	58	n	0.00	0	151	0	151	n	0.00	0	110	0	110	n	0.00	0	123	0	123	n	0.00	0	90	0	90	n	0.00	0	107	0	107	n	0.03	3	102	3	102	y	0.00	0	75	0	75	n	0.00	0	116	0	116	n	0.00	0	84	0	84	n	0.00	0	113	0	113	n	ENSMUSG00000031634.14	Ufsp2	chr8	protein_coding	UFM1-specific peptidase 2
known_NIR_18781	chr8	46433529	46437078	+	46433529;46433676	46433610;46437078	ES	ENSMUST00000123307.8	known	0.00	0	40.0	0	76;4	n	0.00	0	30.0	0	58;2	n	0.00	0	78.0	0	151;5	n	0.00	0	55.5	0	110;1	n	0.00	0	61.5	0	123;0	n	0.00	0	45.0	0	90;0	n	0.00	0	53.5	0	107;0	n	0.05	3	52.5	3	102;3	y	0.00	0	38.5	0	75;2	n	0.00	0	58.5	0	116;1	n	0.00	0	43.0	0	84;2	n	0.00	0	58.5	0	113;4	n	ENSMUSG00000031634.14	Ufsp2	chr8	protein_coding	UFM1-specific peptidase 2
known_NIR_18782	chr8	46433529	46437078	+	46436717	46437078	A5SS&ES	ENSMUST00000210081.2	known	0.00	0	132	0	132	n	0.00	0	80	0	80	n	0.00	0	175	0	175	n	0.00	0	87	0	87	n	0.00	0	152	0	152	n	0.00	0	100	0	100	n	0.00	0	108	0	108	n	0.03	3	105	3	105	y	0.00	0	103	0	103	n	0.00	0	117	0	117	n	0.00	0	85	0	85	n	0.00	0	99	0	99	n	ENSMUSG00000031634.14	Ufsp2	chr8	protein_coding	UFM1-specific peptidase 2
known_NIR_18783	chr8	46433676	46437078	+	46433676;46436717	46436560;46437078	ES	ENSMUST00000034051.7	known	0.04	4	106.0	4	80;132	y	0.03	2	72.0	2	64;80	y	0.03	5	155.0	5	135;175	y	0.01	1	89.5	1	92;87	n	0.00	0	138.0	0	124;152	n	0.00	0	95.5	0	91;100	n	0.00	0	101.5	0	95;108	n	0.03	3	103.0	3	101;105	y	0.02	2	86.5	2	70;103	y	0.01	1	112.0	1	107;117	n	0.02	2	80.0	2	75;85	y	0.04	4	85.5	4	72;99	y	ENSMUSG00000031634.14	Ufsp2	chr8	protein_coding	UFM1-specific peptidase 2
known_NIR_18784	chr8	46616786	46622596	+	46617933	46622596	A5SS&ES	ENSMUST00000145229.2	known	0.00	0	1	0	1	n	-	-	-	-	-	-	0.54	7	6	7	6	y	0.22	2	7	2	7	n	0.33	2	4	2	4	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.60	3	2	3	2	n	0.00	0	2	0	2	n	0.40	2	3	2	3	n	ENSMUSG00000031631.16	Cfap97	chr8	protein_coding	cilia and flagella associated protein 97
known_NIR_18785	chr8	46616786;46617933	46617799;46622596	+	46616786	46622596	cassetteExon	ENSMUST00000034048.13	known	1.00	0.5	0	0;1	0	n	-	-	-	-	-	-	0.33	3.5	7	1;6	7	n	0.71	5.0	2	3;7	2	y	0.50	2.0	2	0;4	2	n	-	-	-	-	-	-	0.60	1.5	1	2;1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1.5	3	1;2	3	n	1.00	1.0	0	0;2	0	n	0.43	1.5	2	0;3	2	n	ENSMUSG00000031631.16	Cfap97	chr8	protein_coding	cilia and flagella associated protein 97
known_NIR_18786	chr8	46616900	46622596	+	46617933	46622596	A5SS&ES	ENSMUST00000145080.8	known	0.50	1	1	1	1	n	1.00	2	0	2	0	n	0.00	0	6	0	6	n	0.36	4	7	4	7	y	0.20	1	4	1	4	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	n	0.60	3	2	3	2	n	0.40	2	3	2	3	n	ENSMUSG00000031631.16	Cfap97	chr8	protein_coding	cilia and flagella associated protein 97
known_NIR_18787	chr8	46924267	46958686	+	46924267	46945837	A3SS&ES	ENSMUST00000210929.2	known	0.01	2	139	2	139	y	0.01	1	98	1	98	n	0.01	1	119	1	119	n	0.02	8	360	8	360	y	0.02	8	442	8	442	y	0.01	1	128	1	128	n	0.01	3	411	3	411	y	0.02	4	183	4	183	y	0.01	3	207	3	207	y	0.02	8	386	8	386	y	0.02	7	330	7	330	y	0.00	1	271	1	271	n	ENSMUSG00000018796.14	Acsl1	chr8	protein_coding	acyl-CoA synthetase long-chain family member 1
known_NIR_18788	chr8	46924267	46958686	+	46924267;46946063	46945837;46958686	ES	ENSMUST00000034046.13	known	0.01	2	212.0	2	139;285	y	0.01	1	135.0	1	98;172	n	0.01	1	152.0	1	119;185	n	0.02	8	524.0	8	360;688	y	0.01	8	638.0	8	442;834	y	0.01	1	169.0	1	128;210	n	0.01	3	558.0	3	411;705	y	0.01	4	276.5	4	183;370	y	0.01	3	296.5	3	207;386	y	0.01	8	605.5	8	386;825	y	0.01	7	492.5	7	330;655	y	0.00	1	463.0	1	271;655	n	ENSMUSG00000018796.14	Acsl1	chr8	protein_coding	acyl-CoA synthetase long-chain family member 1
known_NIR_18789	chr8	46924267	46958686	+	46946063	46958686	5pMXE	ENSMUST00000110371.8	known	0.01	2	285	2	285	y	0.01	1	172	1	172	n	0.01	1	185	1	185	n	0.01	8	688	8	688	y	0.01	8	834	8	834	y	0.00	1	210	1	210	n	0.00	3	705	3	705	y	0.01	4	370	4	370	y	0.01	3	386	3	386	y	0.01	8	825	8	825	y	0.01	7	655	7	655	y	0.00	1	655	1	655	n	ENSMUSG00000018796.14	Acsl1	chr8	protein_coding	acyl-CoA synthetase long-chain family member 1
known_NIR_18790	chr8	46924267;46925086	46924910;46945837	+	46924267	46945837	cassetteExon	ENSMUST00000034046.13	known	0.02	3.0	139	2;4	139	y	0.01	0.5	98	0;1	98	n	0.04	5.0	119	0;10	119	n	0.03	11.5	360	0;23	360	n	0.02	11.0	442	1;21	442	n	0.03	4.5	128	3;6	128	y	0.03	13.0	411	0;26	411	n	0.01	1.5	183	0;3	183	n	0.03	7.0	207	0;14	207	n	0.01	4.0	386	1;7	386	n	0.02	7.5	330	0;15	330	n	0.01	2.5	271	0;5	271	n	ENSMUSG00000018796.14	Acsl1	chr8	protein_coding	acyl-CoA synthetase long-chain family member 1
known_NIR_18791	chr8	46944198	46945837	+	46924267	46945837	A5SS	ENSMUST00000034046.13	known	0.03	5	139	5	139	y	0.03	3	98	3	98	y	0.04	5	119	5	119	y	0.02	9	360	9	360	y	0.01	5	442	5	442	y	0.02	3	128	3	128	y	0.03	11	411	11	411	y	0.02	3	183	3	183	y	0.05	10	207	10	207	y	0.04	15	386	15	386	y	0.04	14	330	14	330	y	0.13	41	271	41	271	y	ENSMUSG00000018796.14	Acsl1	chr8	protein_coding	acyl-CoA synthetase long-chain family member 1
known_NIR_18792	chr8	46944198	46945837	+	46925086	46945837	A5SS	ENSMUST00000135955.8	known	0.56	5	4	5	4	n	0.75	3	1	3	1	n	0.33	5	10	5	10	y	0.28	9	23	9	23	y	0.19	5	21	5	21	y	0.33	3	6	3	6	n	0.30	11	26	11	26	y	0.50	3	3	3	3	n	0.42	10	14	10	14	y	0.68	15	7	15	7	y	0.48	14	15	14	15	y	0.89	41	5	41	5	y	ENSMUSG00000018796.14	Acsl1	chr8	protein_coding	acyl-CoA synthetase long-chain family member 1
known_NIR_18793	chr8	46958768	46961370	+	46958803	46961370	A5SS	ENSMUST00000034046.13	known	0.01	3	286	3	286	y	0.00	0	189	0	189	n	0.00	0	192	0	192	n	0.00	1	740	1	740	n	0.01	4	788	4	788	y	0.00	0	204	0	204	n	0.00	0	729	0	729	n	0.00	0	365	0	365	n	0.00	0	435	0	435	n	0.00	2	849	2	849	y	0.00	2	657	2	657	y	0.00	3	611	3	611	y	ENSMUSG00000018796.14	Acsl1	chr8	protein_coding	acyl-CoA synthetase long-chain family member 1
known_NIR_18794	chr8	46972071;46974524	46974447;46977980	+	46972071;46974382	46974305;46977980	MXE	ENSMUST00000034046.13	known	0.01	4.5	433.5	3;6	426;441	y	0.01	3.5	257.0	1;6	228;286	n	0.01	3.0	234.5	0;6	217;252	n	0.01	12.5	832.5	7;18	813;852	y	0.02	16.0	1001.5	9;23	948;1055	y	0.01	2.0	293.5	1;3	279;308	n	0.01	7.5	991.0	3;12	907;1075	y	0.01	4.0	400.0	1;7	384;416	n	0.01	5.5	577.0	1;10	539;615	n	0.01	11.5	1122.0	5;18	1082;1162	y	0.01	11.5	871.5	3;20	816;927	y	0.01	12.5	838.0	6;19	812;864	y	ENSMUSG00000018796.14	Acsl1	chr8	protein_coding	acyl-CoA synthetase long-chain family member 1
known_NIR_18795	chr8	46984968	46986419	+	46984968	46986403	A3SS	ENSMUST00000034046.13	known	0.00	0	878	0	878	n	0.00	0	598	0	598	n	0.00	0	396	0	396	n	0.01	16	1365	16	1365	y	0.00	0	1656	0	1656	n	0.01	7	464	7	464	y	0.00	0	1854	0	1854	n	0.01	9	630	9	630	y	0.00	0	1027	0	1027	n	0.00	0	2002	0	2002	n	0.00	0	1918	0	1918	n	0.00	0	1384	0	1384	n	ENSMUSG00000018796.14	Acsl1	chr8	protein_coding	acyl-CoA synthetase long-chain family member 1
known_NIR_18796	chr8	47070531	47082769	+	47070536	47082769	A5SS	ENSMUST00000211115.2	known	0.27	8	22	8	22	y	0.25	4	12	4	12	y	0.26	5	14	5	14	y	0.13	6	40	6	40	y	0.25	9	27	9	27	y	0.20	2	8	2	8	y	0.19	6	26	6	26	y	0.24	5	16	5	16	y	0.20	8	32	8	32	y	0.06	2	32	2	32	y	0.20	5	20	5	20	y	0.06	3	48	3	48	y	ENSMUSG00000031628.10	Casp3	chr8	protein_coding	caspase 3
known_NIR_18797	chr8	47192971	47259506	+	47192971;47246620	47246528;47259506	ES	ENSMUST00000034041.9	known	0.06	3	45.5	3	50;41	y	0.00	0	37.5	0	28;47	n	0.02	1	45.5	1	44;47	n	0.03	2	70.0	2	78;62	y	0.05	3	53.5	3	51;56	y	0.00	0	26.5	0	21;32	n	0.00	0	58.0	0	51;65	n	0.00	0	35.5	0	45;26	n	0.09	6	63.5	6	50;77	y	0.04	3	81.0	3	77;85	y	0.03	2	61.0	2	61;61	y	0.02	1	58.5	1	57;60	n	ENSMUSG00000031627.10	Irf2	chr8	protein_coding	interferon regulatory factor 2
known_NIR_18798	chr8	47192971	47259506	+	47246620	47259506	A5SS&ES	ENSMUST00000208507.2	known	0.07	3	41	3	41	y	0.00	0	47	0	47	n	0.02	1	47	1	47	n	0.03	2	62	2	62	y	0.05	3	56	3	56	y	0.00	0	32	0	32	n	0.00	0	65	0	65	n	0.00	0	26	0	26	n	0.07	6	77	6	77	y	0.03	3	85	3	85	y	0.03	2	61	2	61	y	0.02	1	60	1	60	n	ENSMUSG00000031627.10	Irf2	chr8	protein_coding	interferon regulatory factor 2
known_NIR_18799	chr8	47193266	47246528	+	47192971	47246528	A5SS	ENSMUST00000034041.9	known	0.04	2	50	2	50	y	0.00	0	28	0	28	n	0.00	0	44	0	44	n	0.00	0	78	0	78	n	0.07	4	51	4	51	y	0.00	0	21	0	21	n	0.00	0	51	0	51	n	0.00	0	45	0	45	n	0.00	0	50	0	50	n	0.01	1	77	1	77	n	0.00	0	61	0	61	n	0.00	0	57	0	57	n	ENSMUSG00000031627.10	Irf2	chr8	protein_coding	interferon regulatory factor 2
known_NIR_18800	chr8	47193380	47246528	+	47192971	47246528	A5SS	ENSMUST00000034041.9	known	0.06	3	50	3	50	y	0.12	4	28	4	28	y	0.00	0	44	0	44	n	0.03	2	78	2	78	y	0.00	0	51	0	51	n	0.00	0	21	0	21	n	0.00	0	51	0	51	n	0.00	0	45	0	45	n	0.00	0	50	0	50	n	0.00	0	77	0	77	n	0.03	2	61	2	61	y	0.02	1	57	1	57	n	ENSMUSG00000031627.10	Irf2	chr8	protein_coding	interferon regulatory factor 2
known_NIR_18801	chr8	47260786	47290709	+	47260786	47271826	3pMXE	ENSMUST00000210334.2	known	0.00	0	72	0	72	n	0.03	2	65	2	65	y	0.02	1	57	1	57	n	0.01	1	114	1	114	n	0.06	6	92	6	92	y	0.05	2	38	2	38	y	0.01	1	82	1	82	n	0.06	3	50	3	50	y	0.01	1	72	1	72	n	0.00	0	87	0	87	n	0.02	2	80	2	80	y	0.04	4	99	4	99	y	ENSMUSG00000031627.10	Irf2	chr8	protein_coding	interferon regulatory factor 2
known_NIR_18802	chr8	47260786	47290709	+	47260786;47271943	47271826;47290709	ES	ENSMUST00000034041.9	known	0.00	0	61.5	0	72;51	n	0.03	2	59.0	2	65;53	y	0.02	1	48.5	1	57;40	n	0.01	1	85.5	1	114;57	n	0.08	6	68.5	6	92;45	y	0.07	2	28.5	2	38;19	y	0.01	1	73.0	1	82;64	n	0.07	3	37.5	3	50;25	y	0.02	1	59.5	1	72;47	n	0.00	0	88.0	0	87;89	n	0.03	2	70.5	2	80;61	y	0.04	4	86.0	4	99;73	y	ENSMUSG00000031627.10	Irf2	chr8	protein_coding	interferon regulatory factor 2
known_NIR_18803	chr8	47990394	47995727	+	47990394	47995731	A3SS	ENSMUST00000175692.8	known	1.00	32	0	32	0	n	1.00	37	0	37	0	n	0.99	77	1	77	1	n	0.92	46	4	46	4	y	0.93	39	3	39	3	y	1.00	34	0	34	0	n	1.00	47	0	47	0	n	1.00	34	0	34	0	n	0.97	34	1	34	1	n	0.96	43	2	43	2	y	1.00	33	0	33	0	n	0.98	53	1	53	1	n	ENSMUSG00000031568.17	Rwdd4a	chr8	protein_coding	RWD domain containing 4A
known_NIR_18804	chr8	48165329	48165923	-	48165329	48165954	A5SS	ENSMUST00000038738.7	known	0.48	10	11	10	11	y	0.55	6	5	6	5	y	0.62	23	14	23	14	y	0.52	12	11	12	11	y	0.56	23	18	23	18	y	0.70	14	6	14	6	y	0.47	14	16	14	16	y	0.38	6	10	6	10	y	0.65	15	8	15	8	y	0.64	23	13	23	13	y	0.31	5	11	5	11	y	0.47	7	8	7	8	y	ENSMUSG00000038069.7	Cdkn2aip	chr8	protein_coding	CDKN2A interacting protein
known_NIR_18805	chr8	53970903;53971730	53971651;53971951	+	53970903	53971951	cassetteExon	ENSMUST00000211424.2	known	0.00	0.0	62	0;0	62	n	0.02	1.0	53	1;1	53	n	0.02	1.5	64	1;2	64	n	0.04	2.0	53	0;4	53	n	0.03	2.5	72	3;2	72	y	0.00	0.0	32	0;0	32	n	0.04	3.0	65	2;4	65	y	0.04	1.5	34	1;2	34	n	0.04	1.5	39	1;2	39	n	0.01	0.5	93	1;0	93	n	0.00	0.0	35	0;0	35	n	0.03	1.5	52	3;0	52	n	ENSMUSG00000031521.6	Aga	chr8	protein_coding	aspartylglucosaminidase
known_NIR_18806	chr8	57000559	57003580	-	57000559	57003098	A5SS&ES	ENSMUST00000140107.8	known	0.38	5	8	5	8	y	0.50	5	5	5	5	y	0.52	12	11	12	11	y	0.50	3	3	3	3	n	0.76	13	4	13	4	y	0.57	4	3	4	3	n	0.85	11	2	11	2	y	0.44	4	5	4	5	n	0.20	1	4	1	4	n	0.50	6	6	6	6	y	0.56	5	4	5	4	n	0.27	3	8	3	8	y	ENSMUSG00000038215.16	Cep44	chr8	protein_coding	centrosomal protein 44
known_NIR_18807	chr8	57000559	57003723	-	57000559	57003098	A5SS&ES	ENSMUST00000130930.2	known	0.38	5	8	5	8	y	0.29	2	5	2	5	n	0.48	10	11	10	11	y	0.70	7	3	7	3	y	0.71	10	4	10	4	y	0.50	3	3	3	3	n	0.75	6	2	6	2	n	0.00	0	5	0	5	n	0.50	4	4	4	4	n	0.33	3	6	3	6	n	0.43	3	4	3	4	n	0.58	11	8	11	8	y	ENSMUSG00000038215.16	Cep44	chr8	protein_coding	centrosomal protein 44
known_NIR_18808	chr8	57000559	57003723	-	57000559	57003580	A5SS	ENSMUST00000040330.15	known	0.50	5	5	5	5	y	0.29	2	5	2	5	n	0.45	10	12	10	12	y	0.70	7	3	7	3	y	0.43	10	13	10	13	y	0.43	3	4	3	4	n	0.35	6	11	6	11	y	0.00	0	4	0	4	n	0.80	4	1	4	1	n	0.33	3	6	3	6	n	0.38	3	5	3	5	n	0.79	11	3	11	3	y	ENSMUSG00000038215.16	Cep44	chr8	protein_coding	centrosomal protein 44
known_NIR_18809	chr8	57000559	57003723	-	57000559;57003156	57003098;57003723	ES	ENSMUST00000140107.8	known	0.53	5	4.5	5	8;1	n	0.44	2	2.5	2	5;0	n	0.65	10	5.5	10	11;0	n	0.82	7	1.5	7	3;0	n	0.83	10	2.0	10	4;0	n	0.60	3	2.0	3	3;1	n	0.86	6	1.0	6	2;0	n	0.00	0	2.5	0	5;0	n	0.67	4	2.0	4	4;0	n	0.43	3	4.0	3	6;2	y	0.50	3	3.0	3	4;2	n	0.71	11	4.5	11	8;1	n	ENSMUSG00000038215.16	Cep44	chr8	protein_coding	centrosomal protein 44
known_NIR_18810	chr8	57000559;57003156	57003098;57003580	-	57000559	57003580	cassetteExon	ENSMUST00000040330.15	known	0.55	6.0	5	8;4	5	y	0.33	2.5	5	5;0	5	n	0.33	6.0	12	11;1	12	n	0.40	2.0	3	3;1	3	n	0.19	3.0	13	4;2	13	y	0.27	1.5	4	3;0	4	n	0.12	1.5	11	2;1	11	n	0.47	3.5	4	5;2	4	y	0.75	3.0	1	4;2	1	n	0.37	3.5	6	6;1	6	n	0.29	2.0	5	4;0	5	n	0.57	4.0	3	8;0	3	n	ENSMUSG00000038215.16	Cep44	chr8	protein_coding	centrosomal protein 44
known_NIR_18811	chr8	57004411;57017198	57017096;57017593	+	57004411	57017593	cassetteExon	ENSMUST00000156840.3	known	0.04	3.5	81	2;5	81	y	0.00	0.0	78	0;0	78	n	0.01	1.5	121	3;0	121	n	0.02	2.0	110	0;4	110	n	0.02	2.0	122	2;2	122	y	0.02	1.5	70	1;2	70	n	0.01	2.0	141	2;2	141	y	0.03	3.0	94	3;3	94	y	0.02	2.0	92	0;4	92	n	0.02	2.5	154	2;3	154	y	0.01	1.0	100	2;0	100	n	0.01	0.5	95	0;1	95	n	ENSMUSG00000038206.14	Fbxo8	chr8	protein_coding	F-box protein 8
known_NIR_18812	chr8	57022445	57041042	+	57022445	57044471	A3SS	ENSMUST00000110322.9	known	0.99	118	1	118	1	n	0.99	87	1	87	1	n	1.00	146	0	146	0	n	0.97	111	3	111	3	y	1.00	160	0	160	0	n	1.00	97	0	97	0	n	0.99	144	1	144	1	n	0.99	105	1	105	1	n	1.00	108	0	108	0	n	0.99	143	2	143	2	y	0.99	116	1	116	1	n	1.00	127	0	127	0	n	ENSMUSG00000038206.14	Fbxo8	chr8	protein_coding	F-box protein 8
known_NIR_18813	chr8	57043289	57044471	+	57022445	57044471	A5SS	ENSMUST00000110322.9	known	0.99	147	1	147	1	n	0.99	133	1	133	1	n	1.00	230	0	230	0	n	0.98	158	3	158	3	y	1.00	268	0	268	0	n	1.00	186	0	186	0	n	1.00	227	1	227	1	n	0.99	142	1	142	1	n	1.00	172	0	172	0	n	0.99	249	2	249	2	y	0.99	176	1	176	1	n	1.00	243	0	243	0	n	ENSMUSG00000038206.14	Fbxo8	chr8	protein_coding	F-box protein 8
known_NIR_18814	chr8	57757467	57760114	-	57757467;57758450	57758290;57760114	ES	ENSMUST00000225995.2	known	0.00	0	0.5	0	1;0	n	0.00	0	3.5	0	5;2	n	0.67	4	2.0	4	2;2	n	0.00	0	6.0	0	9;3	n	0.25	1	3.0	1	3;3	n	0.62	5	3.0	5	2;4	y	0.40	3	4.5	3	5;4	y	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	0.60	3	2.0	3	4;0	n	0.25	1	3.0	1	3;3	n	0.00	0	1.5	0	0;3	n	ENSMUSG00000100510.8	Hand2os1	chr8	lncRNA	Hand2, opposite strand 1
known_NIR_18815	chr8	57760210	57767550	-	57766872	57767550	A3SS&ES	ENSMUST00000225650.2	known	0.67	2	1	2	1	n	0.67	6	3	6	3	n	1.00	7	0	7	0	n	0.80	4	1	4	1	n	0.80	8	2	8	2	y	0.67	2	1	2	1	n	0.57	4	3	4	3	n	0.67	2	1	2	1	n	1.00	9	0	9	0	n	1.00	8	0	8	0	n	0.86	6	1	6	1	n	0.00	0	2	0	2	n	ENSMUSG00000100510.8	Hand2os1	chr8	lncRNA	Hand2, opposite strand 1
known_NIR_18816	chr8	57760210	57773219	-	57760210	57767550	5pMXE	ENSMUST00000225073.2	known	0.33	1	2	1	2	n	0.25	2	6	2	6	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.20	2	8	2	8	y	0.50	2	2	2	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.25	2	6	2	6	n	1.00	2	0	2	0	n	ENSMUSG00000100510.8	Hand2os1	chr8	lncRNA	Hand2, opposite strand 1
known_NIR_18817	chr8	57760210	57773219	-	57760210;57767649	57767550;57773219	ES	ENSMUST00000185946.7	known	0.40	1	1.5	1	2;1	n	0.21	2	7.5	2	6;9	y	0.00	0	6.5	0	7;6	n	0.00	0	3.5	0	4;3	n	0.19	2	8.5	2	8;9	y	0.67	2	1.0	2	2;0	n	0.00	0	5.5	0	4;7	n	0.00	0	2.0	0	2;2	n	0.00	0	7.5	0	9;6	n	0.00	0	7.0	0	8;6	n	0.27	2	5.5	2	6;5	y	0.57	2	1.5	2	0;3	n	ENSMUSG00000100510.8	Hand2os1	chr8	lncRNA	Hand2, opposite strand 1
known_NIR_18818	chr8	57760210	57773219	-	57767649	57773219	A3SS&ES	ENSMUST00000225650.2	known	0.50	1	1	1	1	n	0.18	2	9	2	9	y	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.18	2	9	2	9	y	1.00	2	0	2	0	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.29	2	5	2	5	n	0.40	2	3	2	3	n	ENSMUSG00000100510.8	Hand2os1	chr8	lncRNA	Hand2, opposite strand 1
known_NIR_18819	chr8	57767649;57771482	57771441;57773219	-	57767649	57773219	cassetteExon	ENSMUST00000185946.7	known	0.50	1.0	1	0;2	1	n	0.00	0.0	9	0;0	9	n	0.14	1.0	6	1;1	6	n	0.00	0.0	3	0;0	3	n	0.00	0.0	9	0;0	9	n	-	-	-	-	-	-	0.00	0.0	7	0;0	7	n	0.00	0.0	2	0;0	2	n	0.20	1.5	6	1;2	6	n	0.08	0.5	6	1;0	6	n	0.38	3.0	5	3;3	5	y	0.00	0.0	3	0;0	3	n	ENSMUSG00000100510.8	Hand2os1	chr8	lncRNA	Hand2, opposite strand 1
known_NIR_18820	chr8	60971640	60973029	+	60971640	60979605	A3SS	ENSMUST00000079472.4	known	0.00	0	182	0	182	n	0.00	0	156	0	156	n	0.01	2	157	2	157	y	0.01	3	309	3	309	y	0.01	3	316	3	316	y	0.00	0	83	0	83	n	0.00	1	247	1	247	n	0.01	1	102	1	102	n	0.00	1	253	1	253	n	0.00	0	279	0	279	n	0.00	0	269	0	269	n	0.00	0	281	0	281	n	ENSMUSG00000057228.7	Aadat	chr8	protein_coding	aminoadipate aminotransferase
known_NIR_18821	chr8	61343570	61346735	+	61343570	61358582	A3SS	ENSMUST00000146863.2	known	1.00	8	0	8	0	n	1.00	10	0	10	0	n	0.88	7	1	7	1	n	1.00	6	0	6	0	n	0.92	11	1	11	1	n	1.00	4	0	4	0	n	0.87	13	2	13	2	y	1.00	6	0	6	0	n	1.00	19	0	19	0	n	0.80	8	2	8	2	y	1.00	6	0	6	0	n	1.00	11	0	11	0	n	ENSMUSG00000038005.16	Hpf1	chr8	protein_coding	histone PARylation factor 1
known_NIR_18822	chr8	61357121	61358582	+	61343570	61358582	A5SS	ENSMUST00000146863.2	known	1.00	22	0	22	0	n	1.00	27	0	27	0	n	0.97	31	1	31	1	n	1.00	31	0	31	0	n	0.98	43	1	43	1	n	1.00	22	0	22	0	n	0.94	34	2	34	2	y	1.00	19	0	19	0	n	1.00	29	0	29	0	n	0.91	21	2	21	2	y	1.00	26	0	26	0	n	1.00	34	0	34	0	n	ENSMUSG00000038005.16	Hpf1	chr8	protein_coding	histone PARylation factor 1
known_NIR_18823	chr8	61366209;61367862	61367787;61372374	-	61366209	61372374	cassetteExon	ENSMUST00000056508.12	known	0.15	8.5	50	4;13	50	y	0.32	11.5	25	9;14	25	y	0.35	27.5	51	18;37	51	y	0.24	10.5	34	7;14	34	y	0.32	22.0	47	22;22	47	y	0.27	12.5	33	7;18	33	y	0.32	21.0	44	18;24	44	y	0.30	15.5	36	13;18	36	y	0.25	10.5	32	7;14	32	y	0.19	10.5	45	7;14	45	y	0.32	11.0	23	7;15	23	y	0.29	16.0	39	12;20	39	y	ENSMUSG00000004319.16	Clcn3	chr8	protein_coding	chloride channel, voltage-sensitive 3
known_NIR_18824	chr8	61394448;61428941	61428766;61435810	-	61394448	61435810	cassetteExon	ENSMUST00000093490.9	known	0.65	5.5	3	8;3	3	y	0.39	7.0	11	8;6	11	y	0.33	12.5	25	9;16	25	y	0.43	16.5	22	18;15	22	y	0.69	20.0	9	26;14	9	y	0.26	11.5	33	12;11	33	y	0.46	16.5	19	15;18	19	y	0.48	11.0	12	15;7	12	y	0.55	8.5	7	11;6	7	y	0.48	15.5	17	14;17	17	y	0.60	9.0	6	8;10	6	y	0.43	12.0	16	16;8	16	y	ENSMUSG00000004319.16	Clcn3	chr8	protein_coding	chloride channel, voltage-sensitive 3
known_NIR_18825	chr8	61459810	61465127	+	61459810;61460289	61460193;61465127	ES	ENSMUST00000120689.8	known	0.00	0	3.5	0	3;4	n	0.00	0	1.5	0	2;1	n	0.10	1	9.5	1	11;8	n	0.11	1	8.0	1	10;6	n	0.00	0	11.0	0	9;13	n	0.10	1	9.0	1	8;10	n	0.00	0	3.5	0	5;2	n	0.17	1	5.0	1	9;1	n	0.00	0	5.0	0	4;6	n	0.00	0	3.5	0	5;2	n	0.44	2	2.5	2	1;4	n	0.23	3	10.0	3	10;10	y	ENSMUSG00000031644.20	Nek1	chr8	protein_coding	NIMA (never in mitosis gene a)-related expressed kinase 1
known_NIR_18826	chr8	61497141	61502818	+	61497141	61497293	3pMXE	ENSMUST00000125717.8	known	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.27	4	11	4	11	y	0.00	0	11	0	11	n	0.29	5	12	5	12	y	0.00	0	11	0	11	n	0.40	2	3	2	3	n	0.36	4	7	4	7	y	0.00	0	6	0	6	n	0.18	2	9	2	9	y	0.00	0	9	0	9	n	0.17	1	5	1	5	n	ENSMUSG00000031644.20	Nek1	chr8	protein_coding	NIMA (never in mitosis gene a)-related expressed kinase 1
known_NIR_18827	chr8	61497141	61502818	+	61497141;61497367	61497293;61502818	ES	ENSMUST00000120689.8	known	0.00	0	9.5	0	13;6	n	0.00	0	9.5	0	8;11	n	0.23	4	13.5	4	11;16	y	0.00	0	12.5	0	11;14	n	0.28	5	13.0	5	12;14	y	0.00	0	9.0	0	11;7	n	0.33	2	4.0	2	3;5	y	0.27	4	11.0	4	7;15	y	0.00	0	5.0	0	6;4	n	0.15	2	11.0	2	9;13	y	0.00	0	8.5	0	9;8	n	0.13	1	6.5	1	5;8	n	ENSMUSG00000031644.20	Nek1	chr8	protein_coding	NIMA (never in mitosis gene a)-related expressed kinase 1
known_NIR_18828	chr8	61502981;61503193	61503062;61507554	+	61502981	61507554	cassetteExon	ENSMUST00000120689.8	known	0.38	2.5	4	3;2	4	n	0.00	0.0	4	0;0	4	n	0.21	4.0	15	3;5	15	y	0.27	1.5	4	0;3	4	n	0.00	0.0	12	0;0	12	n	0.14	1.0	6	0;2	6	n	0.13	2.0	13	2;2	13	y	0.21	3.5	13	4;3	13	y	0.45	2.5	3	3;2	3	n	0.20	2.5	10	5;0	10	n	0.22	2.0	7	1;3	7	n	0.11	1.0	8	0;2	8	n	ENSMUSG00000031644.20	Nek1	chr8	protein_coding	NIMA (never in mitosis gene a)-related expressed kinase 1
known_NIR_18829	chr8	61943094;61943727	61943620;61944579	+	61943094	61944579	cassetteExon	ENSMUST00000034058.14	known	0.02	1.0	63	2;0	63	n	0.03	2.5	72	2;3	72	y	0.03	2.0	66	3;1	66	n	0.02	1.5	85	0;3	85	n	0.03	3.0	108	4;2	108	y	0.03	2.5	72	3;2	72	y	0.05	4.5	88	5;4	88	y	0.05	3.0	62	1;5	62	n	0.02	1.0	63	1;1	63	n	0.00	0.5	123	0;1	123	n	0.02	2.5	98	2;3	98	y	0.00	0.0	80	0;0	80	n	ENSMUSG00000031641.15	Cbr4	chr8	protein_coding	carbonyl reductase 4
known_NIR_18830	chr8	61986609;61987942	61987892;61988720	-	61986609	61988720	cassetteExon	ENSMUST00000121200.9	known	0.00	0.0	35	0;0	35	n	0.00	0.0	43	0;0	43	n	0.04	3.0	74	1;5	74	n	0.03	2.0	71	0;4	71	n	0.00	0.0	49	0;0	49	n	0.01	0.5	46	0;1	46	n	0.05	2.5	44	2;3	44	y	0.00	0.0	63	0;0	63	n	0.00	0.0	27	0;0	27	n	0.05	2.5	47	2;3	47	y	0.00	0.0	40	0;0	40	n	0.00	0.0	33	0;0	33	n	ENSMUSG00000058056.17	Palld	chr8	protein_coding	palladin, cytoskeletal associated protein
known_NIR_18831	chr8	62003279	62137769	-	62003279	62044094	5pMXE	ENSMUST00000121200.9	known	0.00	0	41	0	41	n	0.00	0	19	0	19	n	0.00	0	37	0	37	n	0.00	0	56	0	56	n	0.00	0	54	0	54	n	0.07	2	25	2	25	y	0.04	1	27	1	27	n	0.00	0	33	0	33	n	0.00	0	21	0	21	n	0.00	0	39	0	39	n	0.05	1	20	1	20	n	0.00	0	26	0	26	n	ENSMUSG00000058056.17	Palld	chr8	protein_coding	palladin, cytoskeletal associated protein
known_NIR_18832	chr8	65173530	65174863	-	65173530	65175498	A5SS	ENSMUST00000034015.11	known	0.00	0	463	0	463	n	0.00	0	188	0	188	n	0.00	0	727	0	727	n	0.00	2	472	2	472	y	0.00	5	1196	5	1196	y	0.00	3	625	3	625	y	0.00	4	850	4	850	y	0.00	2	502	2	502	y	0.01	2	384	2	384	y	0.00	0	756	0	756	n	0.01	3	500	3	500	y	0.00	0	559	0	559	n	ENSMUSG00000031604.11	Msmo1	chr8	protein_coding	methylsterol monoxygenase 1
known_NIR_18833	chr8	65180942	65182628	-	65180942	65183806	A5SS	ENSMUST00000147419.2	known	0.67	4	2	4	2	n	0.00	0	5	0	5	n	0.21	3	11	3	11	y	0.29	2	5	2	5	n	0.44	11	14	11	14	y	0.50	7	7	7	7	y	0.55	12	10	12	10	y	0.50	6	6	6	6	y	0.43	3	4	3	4	n	0.29	4	10	4	10	y	0.08	1	11	1	11	n	0.50	2	2	2	2	n	ENSMUSG00000031604.11	Msmo1	chr8	protein_coding	methylsterol monoxygenase 1
known_NIR_18834	chr8	65180942	65183806	-	65180942	65186542	A5SS	ENSMUST00000034015.11	known	0.01	2	214	2	214	y	0.06	5	83	5	83	y	0.03	11	365	11	365	y	0.02	5	245	5	245	y	0.02	14	610	14	610	y	0.02	7	370	7	370	y	0.03	10	388	10	388	y	0.02	6	303	6	303	y	0.02	4	169	4	169	y	0.03	10	308	10	308	y	0.05	11	226	11	226	y	0.01	2	262	2	262	y	ENSMUSG00000031604.11	Msmo1	chr8	protein_coding	methylsterol monoxygenase 1
known_NIR_18835	chr8	65180942;65182669	65182628;65186542	-	65180942	65186542	cassetteExon	ENSMUST00000034015.11	known	0.01	2.5	214	4;1	214	n	0.01	1.0	83	0;2	83	n	0.01	2.5	365	3;2	365	y	0.01	2.0	245	2;2	245	y	0.01	7.5	610	11;4	610	y	0.01	3.5	370	7;0	370	n	0.02	8.0	388	12;4	388	y	0.02	5.5	303	6;5	303	y	0.01	2.5	169	3;2	169	y	0.01	3.0	308	4;2	308	y	0.01	2.5	226	1;4	226	n	0.01	1.5	262	2;1	262	n	ENSMUSG00000031604.11	Msmo1	chr8	protein_coding	methylsterol monoxygenase 1
known_NIR_18836	chr8	65232894	65251395	-	65232894	65264332	A5SS	ENSMUST00000034017.9	known	0.12	5	36	5	36	y	0.10	4	36	4	36	y	0.09	11	114	11	114	y	0.13	8	55	8	55	y	0.16	17	89	17	89	y	0.10	8	76	8	76	y	0.10	10	91	10	91	y	0.09	6	58	6	58	y	0.12	5	36	5	36	y	0.20	16	63	16	63	y	0.14	10	64	10	64	y	0.17	11	53	11	53	y	ENSMUSG00000031605.9	Klhl2	chr8	protein_coding	kelch-like 2, Mayven
known_NIR_18837	chr8	65412261	65418191	+	65412261;65416984	65416850;65418191	ES	ENSMUST00000026595.13	known	0.02	1	39.5	1	43;36	n	0.05	3	54.0	3	54;54	y	0.00	0	61.5	0	72;51	n	0.04	3	64.5	3	60;69	y	0.03	2	59.5	2	61;58	y	0.00	0	34.5	0	42;27	n	0.03	2	68.0	2	71;65	y	0.00	0	39.0	0	46;32	n	0.07	3	42.5	3	47;38	y	0.00	0	69.0	0	78;60	n	0.04	2	51.0	2	58;44	y	0.08	5	57.0	5	50;64	y	ENSMUSG00000025521.16	Tmem192	chr8	protein_coding	transmembrane protein 192
known_NIR_18838	chr8	65412261;65417184	65416850;65418191	+	65412261	65418191	cassetteExon	ENSMUST00000079896.9	known	0.96	22.0	1	43;1	1	n	0.90	27.0	3	54;0	3	n	1.00	36.5	0	72;1	0	n	0.91	32.0	3	60;4	3	y	0.94	30.5	2	61;0	2	n	1.00	21.5	0	42;1	0	n	0.95	35.5	2	71;0	2	n	1.00	23.0	0	46;0	0	n	0.89	24.0	3	47;1	3	n	1.00	41.0	0	78;4	0	n	0.94	30.0	2	58;2	2	y	0.84	25.5	5	50;1	5	n	ENSMUSG00000025521.16	Tmem192	chr8	protein_coding	transmembrane protein 192
known_NIR_18839	chr8	65417184	65418191	+	65416984	65418191	A5SS	ENSMUST00000026595.13	known	0.03	1	36	1	36	n	0.00	0	54	0	54	n	0.02	1	51	1	51	n	0.05	4	69	4	69	y	0.00	0	58	0	58	n	0.04	1	27	1	27	n	0.00	0	65	0	65	n	0.00	0	32	0	32	n	0.03	1	38	1	38	n	0.06	4	60	4	60	y	0.04	2	44	2	44	y	0.02	1	64	1	64	n	ENSMUSG00000025521.16	Tmem192	chr8	protein_coding	transmembrane protein 192
known_NIR_18840	chr8	65418293	65418945	+	65418293	65421363	A3SS	ENSMUST00000026595.13	known	0.04	2	48	2	48	y	0.01	1	67	1	67	n	0.00	0	59	0	59	n	0.00	0	50	0	50	n	0.02	1	55	1	55	n	0.00	0	40	0	40	n	0.00	0	69	0	69	n	0.00	0	26	0	26	n	0.03	1	39	1	39	n	0.01	1	72	1	72	n	0.00	0	67	0	67	n	0.00	0	68	0	68	n	ENSMUSG00000025521.16	Tmem192	chr8	protein_coding	transmembrane protein 192
known_NIR_18841	chr8	66935251	66936710	-	66935195	66936710	A3SS	ENSMUST00000026681.7	known	0.43	6	8	6	8	y	0.14	1	6	1	6	n	0.00	0	18	0	18	n	0.07	1	14	1	14	n	0.19	5	22	5	22	y	0.06	1	17	1	17	n	0.24	6	19	6	19	y	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.07	1	14	1	14	n	0.09	1	10	1	10	n	0.00	0	10	0	10	n	ENSMUSG00000025591.7	Tma16	chr8	protein_coding	translation machinery associated 16
known_NIR_18842	chr8	68166011	68166335	-	68149839	68166335	A3SS	ENSMUST00000098696.10	known	0.00	0	17	0	17	n	0.09	1	10	1	10	n	0.00	0	37	0	37	n	0.00	0	16	0	16	n	0.07	2	25	2	25	y	0.27	3	8	3	8	y	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.03	1	31	1	31	n	0.17	1	5	1	5	n	0.04	1	26	1	26	n	ENSMUSG00000030465.20	Psd3	chr8	protein_coding	pleckstrin and Sec7 domain containing 3
known_NIR_18843	chr8	68358948	68361138	-	68359023	68361138	A3SS	ENSMUST00000098696.10	known	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	15	0	15	n	0.14	2	12	2	12	y	0.00	0	21	0	21	n	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.00	0	21	0	21	n	0.00	0	9	0	9	n	0.00	0	24	0	24	n	0.00	0	4	0	4	n	0.00	0	26	0	26	n	ENSMUSG00000030465.20	Psd3	chr8	protein_coding	pleckstrin and Sec7 domain containing 3
known_NIR_18844	chr8	68361538	68413039	-	68361541	68413039	A3SS	ENSMUST00000098696.10	known	0.20	5	20	5	20	y	0.00	0	7	0	7	n	0.04	1	27	1	27	n	0.23	8	27	8	27	y	0.14	5	31	5	31	y	0.00	0	18	0	18	n	0.00	0	27	0	27	n	0.08	2	23	2	23	y	0.12	2	15	2	15	y	0.03	1	34	1	34	n	0.24	5	16	5	16	y	0.16	3	16	3	16	y	ENSMUSG00000030465.20	Psd3	chr8	protein_coding	pleckstrin and Sec7 domain containing 3
known_NIR_18845	chr8	69274902;69276919	69276842;69279929	+	69274902	69279929	cassetteExon	ENSMUST00000034328.13	known	0.00	0.0	22	0;0	22	n	0.00	0.0	11	0;0	11	n	0.14	4.0	24	2;6	24	y	0.00	0.0	12	0;0	12	n	0.03	0.5	18	0;1	18	n	0.00	0.0	13	0;0	13	n	0.13	4.5	30	5;4	30	y	0.00	0.0	13	0;0	13	n	0.00	0.0	6	0;0	6	n	0.00	0.0	17	0;0	17	n	0.00	0.0	24	0;0	24	n	0.15	2.0	11	2;2	11	y	ENSMUSG00000031864.17	Ints10	chr8	protein_coding	integrator complex subunit 10
known_NIR_18846	chr8	69527957	69541633	-	69527957;69529915	69529841;69541633	ES	ENSMUST00000037478.13	known	0.22	2	7.0	2	6;8	y	0.00	0	7.0	0	5;9	n	0.00	0	5.5	0	6;5	n	0.00	0	6.5	0	7;6	n	0.00	0	15.0	0	18;12	n	0.00	0	7.5	0	8;7	n	0.00	0	9.0	0	11;7	n	0.09	1	10.5	1	12;9	n	0.00	0	5.5	0	3;8	n	0.00	0	7.5	0	7;8	n	0.11	1	8.0	1	8;8	n	0.00	0	10.0	0	8;12	n	ENSMUSG00000036330.13	Slc18a1	chr8	protein_coding	solute carrier family 18 (vesicular monoamine), member 1
known_NIR_18847	chr8	69679121	69680495	+	69679121;69679381	69679324;69680495	ES	ENSMUST00000212681.2	known	0.00	0	5.5	0	5;6	n	0.00	0	7.0	0	9;5	n	0.00	0	13.0	0	13;13	n	0.18	3	13.5	3	17;10	y	0.00	0	8.5	0	7;10	n	0.00	0	4.5	0	7;2	n	0.12	1	7.0	1	5;9	n	0.00	0	5.0	0	4;6	n	0.00	0	11.0	0	11;11	n	0.10	1	9.5	1	11;8	n	0.00	0	6.5	0	6;7	n	0.11	1	8.5	1	8;9	n	ENSMUSG00000059897.6	Zfp930	chr8	protein_coding	zinc finger protein 930
known_NIR_18848	chr8	69828084;69829247	69829138;69848093	-	69828084	69848093	cassetteExon	ENSMUST00000072427.7	known	0.71	12.5	5	11;14	5	y	0.73	8.0	3	5;11	3	y	0.60	9.0	6	9;9	6	y	0.76	12.5	4	13;12	4	y	0.78	17.5	5	14;21	5	y	0.43	3.0	4	2;4	4	y	0.77	13.5	4	13;14	4	y	0.67	10.0	5	15;5	5	y	0.64	10.5	6	13;8	6	y	0.76	13.0	4	11;15	4	y	0.45	7.5	9	10;5	9	y	0.91	10.5	1	9;12	1	n	ENSMUSG00000110444.3	Gm10033	chr8	protein_coding	predicted gene 10033
known_NIR_18849	chr8	69835050	69848093	-	69828084	69848093	A3SS	ENSMUST00000072427.7	known	0.29	2	5	2	5	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.50	5	5	5	5	y	0.33	2	4	2	4	n	0.20	1	4	1	4	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.43	3	4	3	4	n	0.00	0	9	0	9	n	0.67	2	1	2	1	n	ENSMUSG00000110444.3	Gm10033	chr8	protein_coding	predicted gene 10033
known_NIR_18850	chr8	69835050	69848093	-	69829247	69848093	A3SS	ENSMUST00000213012.2	known	0.12	2	14	2	14	y	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.19	5	21	5	21	y	0.33	2	4	2	4	n	0.07	1	14	1	14	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.17	3	15	3	15	y	0.00	0	5	0	5	n	0.14	2	12	2	12	y	ENSMUSG00000110444.3	Gm10033	chr8	protein_coding	predicted gene 10033
known_NIR_18851	chr8	70160344	70160989	-	70160344;70160821	70160761;70160989	ES	ENSMUST00000238292.2	known	0.04	1	24.0	1	27;21	n	0.06	1	15.0	1	20;10	n	0.05	2	35.5	2	34;37	y	0.12	4	29.0	4	30;28	y	0.04	2	42.5	2	47;38	y	0.10	2	19.0	2	21;17	y	0.10	4	36.5	4	43;30	y	0.11	2	16.0	2	16;16	y	0.16	2	10.5	2	14;7	y	0.13	5	34.0	5	41;27	y	0.09	2	19.5	2	26;13	y	0.10	3	26.0	3	23;29	y	ENSMUSG00000054648.9	Zfp869	chr8	protein_coding	zinc finger protein 869
known_NIR_18852	chr8	70160344	70160989	-	70160821	70160989	3pMXE	ENSMUST00000238761.2	known	0.05	1	21	1	21	n	0.09	1	10	1	10	n	0.05	2	37	2	37	y	0.12	4	28	4	28	y	0.05	2	38	2	38	y	0.11	2	17	2	17	y	0.12	4	30	4	30	y	0.11	2	16	2	16	y	0.22	2	7	2	7	n	0.16	5	27	5	27	y	0.13	2	13	2	13	y	0.09	3	29	3	29	y	ENSMUSG00000054648.9	Zfp869	chr8	protein_coding	zinc finger protein 869
known_NIR_18853	chr8	70163634	70165927	-	70163634	70168934	A5SS	ENSMUST00000238292.2	known	1.00	3	0	3	0	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.60	6	4	6	4	y	-	-	-	-	-	-	0.33	1	2	1	2	n	ENSMUSG00000054648.9	Zfp869	chr8	protein_coding	zinc finger protein 869
known_NIR_18854	chr8	70163634	70168934	-	70163634	70166952	A5SS&ES	ENSMUST00000238753.2	known	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.07	1	13	1	13	n	0.00	0	11	0	11	n	0.09	1	10	1	10	n	0.40	2	3	2	3	n	0.00	0	15	0	15	n	0.33	2	4	2	4	n	0.00	0	5	0	5	n	0.25	4	12	4	12	y	0.00	0	10	0	10	n	0.20	2	8	2	8	y	ENSMUSG00000054648.9	Zfp869	chr8	protein_coding	zinc finger protein 869
known_NIR_18855	chr8	70163634	70169035	-	70163634	70166952	A5SS&ES	ENSMUST00000238753.2	known	0.00	0	2	0	2	n	0.18	2	9	2	9	y	0.00	0	13	0	13	n	0.15	2	11	2	11	y	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	15	0	15	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	ENSMUSG00000054648.9	Zfp869	chr8	protein_coding	zinc finger protein 869
known_NIR_18856	chr8	70163634	70169035	-	70163634	70169418	A5SS	ENSMUST00000238418.2	known	0.00	0	4	0	4	n	0.40	2	3	2	3	n	0.00	0	5	0	5	n	0.18	2	9	2	9	y	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	ENSMUSG00000054648.9	Zfp869	chr8	protein_coding	zinc finger protein 869
known_NIR_18857	chr8	70163634	70169418	-	70163634	70165927	A5SS&ES	ENSMUST00000238657.2	known	0.57	4	3	4	3	n	1.00	3	0	3	0	n	0.83	5	1	5	1	n	1.00	9	0	9	0	n	0.86	6	1	6	1	n	1.00	11	0	11	0	n	0.88	7	1	7	1	n	1.00	2	0	2	0	n	0.80	4	1	4	1	n	0.57	8	6	8	6	y	1.00	5	0	5	0	n	0.91	10	1	10	1	n	ENSMUSG00000054648.9	Zfp869	chr8	protein_coding	zinc finger protein 869
known_NIR_18858	chr8	70163634	70169418	-	70163634	70166952	A5SS&ES	ENSMUST00000238753.2	known	0.67	4	2	4	2	n	0.25	3	9	3	9	y	0.28	5	13	5	13	y	0.45	9	11	9	11	y	0.38	6	10	6	10	y	0.79	11	3	11	3	y	0.32	7	15	7	15	y	0.33	2	4	2	4	n	0.44	4	5	4	5	n	0.40	8	12	8	12	y	0.33	5	10	5	10	y	0.56	10	8	10	8	y	ENSMUSG00000054648.9	Zfp869	chr8	protein_coding	zinc finger protein 869
known_NIR_18859	chr8	70163634	70169418	-	70163634	70168934	A5SS	ENSMUST00000238292.2	known	1.00	4	0	4	0	n	1.00	3	0	3	0	n	0.83	5	1	5	1	n	1.00	9	0	9	0	n	0.86	6	1	6	1	n	0.85	11	2	11	2	y	1.00	7	0	7	0	n	0.50	2	2	2	2	n	1.00	4	0	4	0	n	0.67	8	4	8	4	y	1.00	5	0	5	0	n	0.83	10	2	10	2	y	ENSMUSG00000054648.9	Zfp869	chr8	protein_coding	zinc finger protein 869
known_NIR_18860	chr8	70163634;70167059	70166952;70168934	-	70163634	70168934	cassetteExon	ENSMUST00000238292.2	known	1.00	2.5	0	2;3	0	n	1.00	7.0	0	9;5	0	n	0.92	12.0	1	13;11	1	n	1.00	7.0	0	11;3	0	n	0.89	8.5	1	10;7	1	n	0.50	2.0	2	3;1	2	n	1.00	11.0	0	15;7	0	n	0.75	6.0	2	4;8	2	y	1.00	3.0	0	5;1	0	n	0.67	8.0	4	12;4	4	y	1.00	8.5	0	10;7	0	n	0.75	6.0	2	8;4	2	y	ENSMUSG00000054648.9	Zfp869	chr8	protein_coding	zinc finger protein 869
known_NIR_18861	chr8	70163634;70167059	70166952;70169418	-	70163634	70169418	cassetteExon	ENSMUST00000238418.2	known	0.60	6.0	4	2;10	4	y	0.67	6.0	3	9;3	3	y	0.62	8.0	5	13;3	5	y	0.51	9.5	9	11;8	9	y	0.56	7.5	6	10;5	6	y	0.24	3.5	11	3;4	11	y	0.62	11.5	7	15;8	7	y	0.73	5.5	2	4;7	2	y	0.50	4.0	4	5;3	4	y	0.48	7.5	8	12;3	8	y	0.57	6.5	5	10;3	5	y	0.38	6.0	10	8;4	10	y	ENSMUSG00000054648.9	Zfp869	chr8	protein_coding	zinc finger protein 869
known_NIR_18862	chr8	70167059	70169418	-	70167059	70168934	A5SS	ENSMUST00000238657.2	known	0.77	10	3	10	3	y	0.38	3	5	3	5	n	0.21	3	11	3	11	y	0.73	8	3	8	3	y	0.42	5	7	5	7	y	0.80	4	1	4	1	n	0.53	8	7	8	7	y	0.47	7	8	7	8	y	0.75	3	1	3	1	n	0.43	3	4	3	4	n	0.30	3	7	3	7	y	0.50	4	4	4	4	n	ENSMUSG00000054648.9	Zfp869	chr8	protein_coding	zinc finger protein 869
known_NIR_18863	chr8	70167059	70169418	-	70167059	70169550	A5SS	ENSMUST00000238753.2	known	0.91	10	1	10	1	n	1.00	3	0	3	0	n	1.00	3	0	3	0	n	1.00	8	0	8	0	n	1.00	5	0	5	0	n	1.00	4	0	4	0	n	0.80	8	2	8	2	y	1.00	7	0	7	0	n	1.00	3	0	3	0	n	1.00	3	0	3	0	n	1.00	3	0	3	0	n	1.00	4	0	4	0	n	ENSMUSG00000054648.9	Zfp869	chr8	protein_coding	zinc finger protein 869
known_NIR_18864	chr8	70195919	70196842	-	70196260	70196842	A3SS	ENSMUST00000130458.8	known	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.15	2	11	2	11	y	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.20	1	4	1	4	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.29	2	5	2	5	n	0.00	0	10	0	10	n	ENSMUSG00000092260.8	Zfp963	chr8	protein_coding	zinc finger protein 963
known_NIR_18865	chr8	70197237	70219292	-	70197237	70202482	5pMXE	ENSMUST00000130458.8	known	0.14	1	6	1	6	n	0.25	2	6	2	6	n	0.11	1	8	1	8	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.25	1	3	1	3	n	0.25	3	9	3	9	y	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.14	1	6	1	6	n	0.00	0	8	0	8	n	0.10	1	9	1	9	n	ENSMUSG00000092260.8	Zfp963	chr8	protein_coding	zinc finger protein 963
known_NIR_18866	chr8	70221897	70231153	-	70221897	70227440	5pMXE	ENSMUST00000149782.8	known	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.18	2	9	2	9	y	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	16	0	16	n	0.00	0	10	0	10	n	0.00	0	17	0	17	n	0.00	0	2	0	2	n	0.06	1	15	1	15	n	ENSMUSG00000092544.9	Gm20422	chr8	protein_coding	predicted gene 20422
known_NIR_18867	chr8	70252128	70252482	+	70252128	70252412	A3SS	ENSMUST00000034326.7	known	0.37	28	47	28	47	y	0.29	19	47	19	47	y	0.23	21	72	21	72	y	0.22	12	43	12	43	y	0.23	21	71	21	71	y	0.35	23	42	23	42	y	0.16	11	57	11	57	y	0.21	9	33	9	33	y	0.24	12	37	12	37	y	0.26	18	50	18	50	y	0.33	20	40	20	40	y	0.30	22	52	22	52	y	ENSMUSG00000031862.12	Atp13a1	chr8	protein_coding	ATPase type 13A1
known_NIR_18868	chr8	70369098	70369219	-	70369098	70369210	A5SS	ENSMUST00000177851.9	known	0.89	47	6	47	6	y	0.88	23	3	23	3	y	0.89	59	7	59	7	y	0.91	64	6	64	6	y	0.86	74	12	74	12	y	0.84	42	8	42	8	y	0.98	58	1	58	1	n	0.76	32	10	32	10	y	0.98	42	1	42	1	n	0.87	61	9	61	9	y	0.89	34	4	34	4	y	0.98	52	1	52	1	n	ENSMUSG00000036180.16	Gatad2a	chr8	protein_coding	GATA zinc finger domain containing 2A
known_NIR_18869	chr8	70369098	70369219	-	70369101	70369219	A3SS	ENSMUST00000065169.12	known	0.84	47	9	47	9	y	0.79	23	6	23	6	y	0.75	59	20	59	20	y	0.85	64	11	64	11	y	0.82	74	16	74	16	y	0.78	42	12	42	12	y	0.79	58	15	58	15	y	0.76	32	10	32	10	y	0.84	42	8	42	8	y	0.82	61	13	61	13	y	0.71	34	14	34	14	y	0.88	52	7	52	7	y	ENSMUSG00000036180.16	Gatad2a	chr8	protein_coding	GATA zinc finger domain containing 2A
known_NIR_18870	chr8	70403404	70426740	-	70403404	70448593	A5SS	ENSMUST00000177851.9	known	0.28	9	23	9	23	y	0.31	9	20	9	20	y	0.31	12	27	12	27	y	0.65	24	13	24	13	y	0.38	22	36	22	36	y	0.30	11	26	11	26	y	0.48	15	16	15	16	y	0.56	14	11	14	11	y	0.44	12	15	12	15	y	0.52	22	20	22	20	y	0.33	7	14	7	14	y	0.36	10	18	10	18	y	ENSMUSG00000036180.16	Gatad2a	chr8	protein_coding	GATA zinc finger domain containing 2A
known_NIR_18871	chr8	70475319	70476257	-	70475319	70476261	A5SS	ENSMUST00000168013.3	known	0.05	1	19	1	19	n	0.06	1	17	1	17	n	0.00	0	19	0	19	n	0.00	0	15	0	15	n	0.10	2	19	2	19	y	0.38	3	5	3	5	n	0.00	0	22	0	22	n	0.00	0	9	0	9	n	0.09	1	10	1	10	n	0.09	2	20	2	20	y	0.18	3	14	3	14	y	0.06	1	15	1	15	n	ENSMUSG00000031858.17	Mau2	chr8	protein_coding	MAU2 sister chromatid cohesion factor
known_NIR_18872	chr8	70475319	70476257	-	70475319	70476264	A5SS	ENSMUST00000050561.13	known	0.09	1	10	1	10	n	0.06	1	15	1	15	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.10	2	19	2	19	y	0.50	3	3	3	3	n	0.00	0	22	0	22	n	0.00	0	5	0	5	n	0.08	1	12	1	12	n	0.11	2	16	2	16	y	0.14	3	19	3	19	y	0.06	1	15	1	15	n	ENSMUSG00000031858.17	Mau2	chr8	protein_coding	MAU2 sister chromatid cohesion factor
known_NIR_18873	chr8	70475319	70476264	-	70475319	70476261	A5SS	ENSMUST00000168013.3	known	0.34	10	19	10	19	y	0.47	15	17	15	17	y	0.37	11	19	11	19	y	0.50	15	15	15	15	y	0.50	19	19	19	19	y	0.38	3	5	3	5	n	0.50	22	22	22	22	y	0.36	5	9	5	9	y	0.55	12	10	12	10	y	0.44	16	20	16	20	y	0.58	19	14	19	14	y	0.50	15	15	15	15	y	ENSMUSG00000031858.17	Mau2	chr8	protein_coding	MAU2 sister chromatid cohesion factor
known_NIR_18874	chr8	70530164	70530537	+	70530164	70530531	A3SS	ENSMUST00000110160.9	known	0.02	4	160	4	160	y	0.02	2	104	2	104	y	0.00	0	110	0	110	n	0.03	3	96	3	96	y	0.00	0	190	0	190	n	0.04	3	64	3	64	y	0.01	2	164	2	164	y	0.00	0	72	0	72	n	0.00	0	86	0	86	n	0.00	0	171	0	171	n	0.00	0	115	0	115	n	0.02	3	152	3	152	y	ENSMUSG00000036151.16	Tm6sf2	chr8	protein_coding	transmembrane 6 superfamily member 2
known_NIR_18875	chr8	70530632	70530724	+	70530632	70530960	A3SS	ENSMUST00000110160.9	known	0.00	0	123	0	123	n	0.03	4	118	4	118	y	0.00	0	109	0	109	n	0.00	0	107	0	107	n	0.01	2	166	2	166	y	0.01	1	78	1	78	n	0.02	3	177	3	177	y	0.00	0	65	0	65	n	0.00	0	87	0	87	n	0.00	0	172	0	172	n	0.00	0	141	0	141	n	0.02	3	179	3	179	y	ENSMUSG00000036151.16	Tm6sf2	chr8	protein_coding	transmembrane 6 superfamily member 2
known_NIR_18876	chr8	70584658;70585167	70585062;70585237	+	70584658	70585237	cassetteExon	ENSMUST00000211898.2	known	0.69	39.5	18	37;42	18	y	0.65	24.5	13	24;25	13	y	0.70	63.5	27	68;59	27	y	0.71	27.0	11	23;31	11	y	0.67	47.0	23	48;46	23	y	0.65	24.5	13	22;27	13	y	0.69	45.5	20	43;48	20	y	0.64	17.5	10	17;18	10	y	0.66	25.5	13	28;23	13	y	0.60	32.5	22	38;27	22	y	0.64	40.5	23	42;39	23	y	0.79	41.5	11	41;42	11	y	ENSMUSG00000071078.7	Nr2c2ap	chr8	protein_coding	nuclear receptor 2C2-associated protein
known_NIR_18877	chr8	70588041	70588186	-	70588041	70588216	A5SS	ENSMUST00000075724.9	known	0.16	3	16	3	16	y	0.25	5	15	5	15	y	0.27	9	24	9	24	y	0.25	6	18	6	18	y	0.31	11	24	11	24	y	0.37	15	26	15	26	y	0.21	9	34	9	34	y	0.31	8	18	8	18	y	0.19	4	17	4	17	y	0.32	6	13	6	13	y	0.37	7	12	7	12	y	0.14	3	19	3	19	y	ENSMUSG00000036120.11	Rfxank	chr8	protein_coding	regulatory factor X-associated ankyrin-containing protein
known_NIR_18878	chr8	70595188;70597247	70597148;70597674	+	70595188	70597674	cassetteExon	ENSMUST00000002418.15	known	0.03	3.5	106	4;3	106	y	0.04	5.5	123	6;5	123	y	0.01	1.5	109	1;2	109	n	0.02	2.5	106	1;4	106	n	0.04	5.5	130	6;5	130	y	0.06	5.5	86	5;6	86	y	0.04	5.5	124	5;6	124	y	0.02	1.5	64	1;2	64	n	0.08	8.0	95	10;6	95	y	0.05	6.0	120	7;5	120	y	0.04	5.0	120	5;5	120	y	0.02	2.5	105	2;3	105	y	ENSMUSG00000002345.19	Borcs8	chr8	protein_coding	BLOC-1 related complex subunit 8
known_NIR_18879	chr8	70625090	70629495	+	70625090	70626953	A3SS&ES	ENSMUST00000123923.2	known	0.25	1	3	1	3	n	0.30	3	7	3	7	y	0.35	9	17	9	17	y	0.29	2	5	2	5	n	0.30	11	26	11	26	y	0.35	6	11	6	11	y	0.22	4	14	4	14	y	0.25	4	12	4	12	y	0.60	3	2	3	2	n	0.32	6	13	6	13	y	0.33	2	4	2	4	n	0.29	4	10	4	10	y	ENSMUSG00000002342.18	Tmem161a	chr8	protein_coding	transmembrane protein 161A
known_NIR_18880	chr8	70625090	70629495	+	70625090;70627056	70626953;70629495	ES	ENSMUST00000002413.15	known	0.10	1	9.5	1	3;16	n	0.21	3	11.0	3	7;15	y	0.25	9	27.0	9	17;37	y	0.17	2	9.5	2	5;14	y	0.27	11	30.0	11	26;34	y	0.25	6	18.0	6	11;25	y	0.16	4	21.0	4	14;28	y	0.21	4	15.5	4	12;19	y	0.32	3	6.5	3	2;11	y	0.33	6	12.0	6	13;11	y	0.17	2	10.0	2	4;16	y	0.24	4	13.0	4	10;16	y	ENSMUSG00000002342.18	Tmem161a	chr8	protein_coding	transmembrane protein 161A
known_NIR_18881	chr8	70625090	70629495	+	70627056	70629495	5pMXE	ENSMUST00000149105.2	known	0.06	1	16	1	16	n	0.17	3	15	3	15	y	0.20	9	37	9	37	y	0.12	2	14	2	14	y	0.24	11	34	11	34	y	0.19	6	25	6	25	y	0.12	4	28	4	28	y	0.17	4	19	4	19	y	0.21	3	11	3	11	y	0.35	6	11	6	11	y	0.11	2	16	2	16	y	0.20	4	16	4	16	y	ENSMUSG00000002342.18	Tmem161a	chr8	protein_coding	transmembrane protein 161A
known_NIR_18882	chr8	70625090;70627056	70626953;70633189	+	70625090	70633189	cassetteExon	ENSMUST00000125755.8	known	1.00	1.5	0	3;0	0	n	1.00	3.5	0	7;0	0	n	1.00	8.5	0	17;0	0	n	0.71	2.5	1	5;0	1	n	0.88	14.0	2	26;2	2	y	1.00	5.5	0	11;0	0	n	1.00	7.0	0	14;0	0	n	0.86	6.0	1	12;0	1	n	1.00	1.0	0	2;0	0	n	1.00	6.5	0	13;0	0	n	1.00	2.0	0	4;0	0	n	0.85	5.5	1	10;1	1	n	ENSMUSG00000002342.18	Tmem161a	chr8	protein_coding	transmembrane protein 161A
known_NIR_18883	chr8	70625090;70627056	70626953;70633189	+	70625090;70631668	70629495;70633189	MXE	ENSMUST00000182980.8	known	0.08	1.5	17.0	3;0	1;33	n	0.20	3.5	14.0	7;0	3;25	n	0.20	8.5	35.0	17;0	9;61	n	0.16	2.5	13.0	5;0	2;24	n	0.30	14.0	32.0	26;2	11;53	y	0.17	5.5	26.5	11;0	6;47	n	0.23	7.0	24.0	14;0	4;44	n	0.25	6.0	18.0	12;0	4;32	n	0.05	1.0	19.0	2;0	3;35	n	0.24	6.5	21.0	13;0	6;36	n	0.10	2.0	18.0	4;0	2;34	n	0.24	5.5	17.5	10;1	4;31	n	ENSMUSG00000002342.18	Tmem161a	chr8	protein_coding	transmembrane protein 161A
known_NIR_18884	chr8	70627056	70629457	+	70627056	70629495	A3SS	ENSMUST00000002413.15	known	0.06	1	16	1	16	n	0.00	0	15	0	15	n	0.00	0	37	0	37	n	0.00	0	14	0	14	n	0.00	0	34	0	34	n	0.00	0	25	0	25	n	0.00	0	28	0	28	n	0.14	3	19	3	19	y	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.16	3	16	3	16	y	ENSMUSG00000002342.18	Tmem161a	chr8	protein_coding	transmembrane protein 161A
known_NIR_18885	chr8	70627056	70633189	+	70627056	70629495	3pMXE	ENSMUST00000133339.8	known	0.00	0	16	0	16	n	0.00	0	15	0	15	n	0.00	0	37	0	37	n	0.00	0	14	0	14	n	0.06	2	34	2	34	y	0.00	0	25	0	25	n	0.00	0	28	0	28	n	0.00	0	19	0	19	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.06	1	16	1	16	n	ENSMUSG00000002342.18	Tmem161a	chr8	protein_coding	transmembrane protein 161A
known_NIR_18886	chr8	70629988	70630102	+	70629988	70633189	A3SS	ENSMUST00000182365.8	known	0.92	33	3	33	3	y	1.00	28	0	28	0	n	1.00	53	0	53	0	n	0.98	45	1	45	1	n	1.00	56	0	56	0	n	1.00	25	0	25	0	n	0.98	61	1	61	1	n	1.00	39	0	39	0	n	1.00	33	0	33	0	n	0.95	40	2	40	2	y	1.00	32	0	32	0	n	1.00	38	0	38	0	n	ENSMUSG00000002342.18	Tmem161a	chr8	protein_coding	transmembrane protein 161A
known_NIR_18887	chr8	70629988	70631517	+	70629988;70630258	70630102;70631517	ES	ENSMUST00000002413.15	known	0.00	0	28.5	0	33;24	n	0.04	1	25.5	1	28;23	n	0.00	0	55.5	0	53;58	n	0.00	0	36.5	0	45;28	n	0.04	2	50.0	2	56;44	y	0.00	0	29.5	0	25;34	n	0.00	0	50.5	0	61;40	n	0.00	0	32.0	0	39;25	n	0.00	0	33.0	0	33;33	n	0.00	0	40.5	0	40;41	n	0.00	0	34.0	0	32;36	n	0.00	0	34.5	0	38;31	n	ENSMUSG00000002342.18	Tmem161a	chr8	protein_coding	transmembrane protein 161A
known_NIR_18888	chr8	70629988	70631517	+	70630258	70631517	5pMXE	ENSMUST00000125906.8	known	0.00	0	24	0	24	n	0.04	1	23	1	23	n	0.00	0	58	0	58	n	0.00	0	28	0	28	n	0.04	2	44	2	44	y	0.00	0	34	0	34	n	0.00	0	40	0	40	n	0.00	0	25	0	25	n	0.00	0	33	0	33	n	0.00	0	41	0	41	n	0.00	0	36	0	36	n	0.00	0	31	0	31	n	ENSMUSG00000002342.18	Tmem161a	chr8	protein_coding	transmembrane protein 161A
known_NIR_18889	chr8	70629988	70633189	+	70631668	70633189	5pMXE	ENSMUST00000133084.8	known	0.08	3	33	3	33	y	0.00	0	25	0	25	n	0.00	0	61	0	61	n	0.04	1	24	1	24	n	0.00	0	53	0	53	n	0.00	0	47	0	47	n	0.02	1	44	1	44	n	0.00	0	32	0	32	n	0.00	0	35	0	35	n	0.05	2	36	2	36	y	0.00	0	34	0	34	n	0.00	0	31	0	31	n	ENSMUSG00000002342.18	Tmem161a	chr8	protein_coding	transmembrane protein 161A
known_NIR_18890	chr8	70631668	70633189	+	70625090	70633189	A5SS	ENSMUST00000125755.8	known	1.00	33	0	33	0	n	1.00	25	0	25	0	n	1.00	61	0	61	0	n	0.96	24	1	24	1	n	0.96	53	2	53	2	y	1.00	47	0	47	0	n	1.00	44	0	44	0	n	0.97	32	1	32	1	n	1.00	35	0	35	0	n	1.00	36	0	36	0	n	1.00	34	0	34	0	n	0.97	31	1	31	1	n	ENSMUSG00000002342.18	Tmem161a	chr8	protein_coding	transmembrane protein 161A
known_NIR_18891	chr8	70631668	70633189	+	70627056	70633189	A5SS	ENSMUST00000182715.8	known	1.00	33	0	33	0	n	1.00	25	0	25	0	n	1.00	61	0	61	0	n	1.00	24	0	24	0	n	0.96	53	2	53	2	y	1.00	47	0	47	0	n	1.00	44	0	44	0	n	1.00	32	0	32	0	n	1.00	35	0	35	0	n	1.00	36	0	36	0	n	1.00	34	0	34	0	n	0.97	31	1	31	1	n	ENSMUSG00000002342.18	Tmem161a	chr8	protein_coding	transmembrane protein 161A
known_NIR_18892	chr8	70631672	70633189	+	70631668	70633189	A5SS	ENSMUST00000002413.15	known	0.03	1	33	1	33	n	0.00	0	25	0	25	n	0.05	3	61	3	61	y	0.00	0	24	0	24	n	0.04	2	53	2	53	y	0.00	0	47	0	47	n	0.04	2	44	2	44	y	0.09	3	32	3	32	y	0.03	1	35	1	35	n	0.03	1	36	1	36	n	0.06	2	34	2	34	y	0.00	0	31	0	31	n	ENSMUSG00000002342.18	Tmem161a	chr8	protein_coding	transmembrane protein 161A
known_NIR_18893	chr8	70633518	70633799	+	70633699	70633799	A5SS&ES	ENSMUST00000182715.8	known	0.00	0	39	0	39	n	0.03	1	39	1	39	n	0.01	1	66	1	66	n	0.00	0	36	0	36	n	0.03	2	69	2	69	y	0.00	0	44	0	44	n	0.02	2	79	2	79	y	0.04	2	43	2	43	y	0.00	0	35	0	35	n	0.00	0	50	0	50	n	0.00	0	28	0	28	n	0.02	1	48	1	48	n	ENSMUSG00000002342.18	Tmem161a	chr8	protein_coding	transmembrane protein 161A
known_NIR_18894	chr8	70696706	70701079	+	70696706	70701076	A3SS	ENSMUST00000164403.8	known	0.00	0	17	0	17	n	0.00	0	25	0	25	n	0.00	0	22	0	22	n	0.00	0	21	0	21	n	0.00	0	29	0	29	n	0.00	0	10	0	10	n	0.00	0	20	0	20	n	0.14	2	12	2	12	y	0.00	0	14	0	14	n	0.04	1	26	1	26	n	0.14	2	12	2	12	y	0.00	0	15	0	15	n	ENSMUSG00000036054.16	Sugp2	chr8	protein_coding	SURP and G patch domain containing 2
known_NIR_18895	chr8	70713239	70715521	+	70713967	70715521	A5SS	ENSMUST00000131489.8	known	0.00	0	23	0	23	n	0.00	0	14	0	14	n	0.07	1	13	1	13	n	0.00	0	24	0	24	n	0.00	0	26	0	26	n	0.00	0	10	0	10	n	0.04	1	27	1	27	n	0.00	0	13	0	13	n	0.00	0	15	0	15	n	0.00	0	26	0	26	n	0.00	0	29	0	29	n	0.10	2	18	2	18	y	ENSMUSG00000036054.16	Sugp2	chr8	protein_coding	SURP and G patch domain containing 2
known_NIR_18896	chr8	70713239;70713967	70713881;70715521	+	70713239	70715521	cassetteExon	ENSMUST00000093458.11	known	1.00	14.0	0	5;23	0	n	1.00	9.5	0	5;14	0	n	0.91	10.0	1	7;13	1	n	1.00	16.0	0	8;24	0	n	1.00	17.5	0	9;26	0	n	1.00	5.5	0	1;10	0	n	0.95	18.0	1	9;27	1	n	1.00	11.0	0	9;13	0	n	1.00	8.5	0	2;15	0	n	1.00	18.0	0	10;26	0	n	1.00	23.0	0	17;29	0	n	0.86	12.5	2	7;18	2	y	ENSMUSG00000036054.16	Sugp2	chr8	protein_coding	SURP and G patch domain containing 2
known_NIR_18897	chr8	70747485	70748017	-	70747411	70748017	A3SS	ENSMUST00000008004.10	known	0.03	2	64	2	64	y	0.05	4	70	4	70	y	0.02	2	79	2	79	y	0.02	1	61	1	61	n	0.05	4	83	4	83	y	0.00	0	29	0	29	n	0.01	1	101	1	101	n	0.02	1	50	1	50	n	0.09	5	49	5	49	y	0.03	2	66	2	66	y	0.01	1	66	1	66	n	0.05	4	79	4	79	y	ENSMUSG00000057788.14	Ddx49	chr8	protein_coding	DEAD box helicase 49
known_NIR_18898	chr8	70759301	70761145	+	70759301;70760653	70760600;70761145	ES	ENSMUST00000066469.14	known	0.01	5	486.5	5	485;488	y	0.01	4	506.5	4	541;472	y	0.01	6	944.5	6	918;971	y	0.00	1	480.5	1	493;468	n	0.01	5	739.5	5	739;740	y	0.00	1	574.5	1	554;595	n	0.01	5	610.0	5	613;607	y	0.01	3	529.5	3	535;524	y	0.00	0	418.5	0	421;416	n	0.01	4	621.5	4	618;625	y	0.00	1	661.5	1	659;664	n	0.01	3	534.5	3	513;556	y	ENSMUSG00000055681.15	Cope	chr8	protein_coding	coatomer protein complex, subunit epsilon
known_NIR_18899	chr8	70763141	70765356	+	70763141;70764346	70764278;70765356	ES	ENSMUST00000066469.14	known	0.01	3	505.0	3	500;510	y	0.02	9	590.5	9	579;602	y	0.02	19	843.5	19	819;868	y	0.02	7	451.5	7	454;449	y	0.01	7	693.5	7	705;682	y	0.01	3	548.0	3	529;567	y	0.01	9	645.0	9	615;675	y	0.01	4	510.5	4	526;495	y	0.00	2	416.0	2	413;419	y	0.00	3	643.5	3	621;666	y	0.01	4	636.0	4	636;636	y	0.01	3	534.0	3	529;539	y	ENSMUSG00000055681.15	Cope	chr8	protein_coding	coatomer protein complex, subunit epsilon
known_NIR_18900	chr8	70792491	70792632	-	70792491	70792665	A5SS	ENSMUST00000215817.2	known	0.19	9	39	9	39	y	0.02	1	45	1	45	n	0.04	2	52	2	52	y	0.08	5	59	5	59	y	0.09	8	80	8	80	y	0.06	2	34	2	34	y	0.07	5	68	5	68	y	0.11	5	42	5	42	y	0.08	4	45	4	45	y	0.15	11	62	11	62	y	0.16	8	43	8	43	y	0.13	10	69	10	69	y	ENSMUSG00000058301.9	Upf1	chr8	protein_coding	UPF1 regulator of nonsense transcripts homolog (yeast)
known_NIR_18901	chr8	70905669	70929500	-	70905669;70908298	70908116;70929500	ES	ENSMUST00000066597.13	known	0.00	0	3.0	0	4;2	n	0.00	0	1.0	0	0;2	n	0.00	0	2.0	0	2;2	n	0.00	0	6.5	0	7;6	n	0.00	0	8.5	0	12;5	n	0.36	2	3.5	2	0;7	n	0.00	0	5.0	0	10;0	n	0.44	2	2.5	2	3;2	n	0.00	0	3.0	0	5;1	n	0.22	2	7.0	2	11;3	y	0.00	0	3.5	0	5;2	n	0.00	0	2.5	0	0;5	n	ENSMUSG00000055707.14	Klhl26	chr8	protein_coding	kelch-like 26
known_NIR_18902	chr8	70957159	70958406	-	70957159;70957710	70957634;70958406	ES	ENSMUST00000135773.8	known	0.01	3	204.0	3	182;226	y	0.03	7	245.5	7	218;273	y	0.02	3	140.0	3	114;166	y	0.01	2	195.0	2	164;226	y	0.01	2	246.0	2	194;298	y	0.02	2	94.5	2	73;116	y	0.03	7	256.5	7	219;294	y	0.00	0	91.5	0	94;89	n	0.04	7	179.5	7	145;214	y	0.00	1	265.0	1	211;319	n	0.01	2	237.5	2	216;259	y	0.00	1	225.0	1	195;255	n	ENSMUSG00000058833.12	Rex1bd	chr8	protein_coding	required for excision 1-B domain containing
known_NIR_18903	chr8	70957159	70958406	-	70957710	70958406	A3SS&ES	ENSMUST00000136913.2	known	0.01	3	226	3	226	y	0.03	7	273	7	273	y	0.02	3	166	3	166	y	0.01	2	226	2	226	y	0.01	2	298	2	298	y	0.02	2	116	2	116	y	0.02	7	294	7	294	y	0.00	0	89	0	89	n	0.03	7	214	7	214	y	0.00	1	319	1	319	n	0.01	2	259	2	259	y	0.00	1	255	1	255	n	ENSMUSG00000058833.12	Rex1bd	chr8	protein_coding	required for excision 1-B domain containing
known_NIR_18904	chr8	70957178	70957634	-	70957159	70957634	A3SS	ENSMUST00000135773.8	known	0.02	4	182	4	182	y	0.02	4	218	4	218	y	0.02	2	114	2	114	y	0.02	3	164	3	164	y	0.00	0	194	0	194	n	0.01	1	73	1	73	n	0.03	6	219	6	219	y	0.04	4	94	4	94	y	0.05	7	145	7	145	y	0.00	0	211	0	211	n	0.02	4	216	4	216	y	0.04	9	195	9	195	y	ENSMUSG00000058833.12	Rex1bd	chr8	protein_coding	required for excision 1-B domain containing
known_NIR_18905	chr8	70958610	70958942	-	70958610	70959147	A5SS	ENSMUST00000135773.8	known	0.12	28	203	28	203	y	0.14	40	238	40	238	y	0.19	33	137	33	137	y	0.11	24	202	24	202	y	0.20	58	238	58	238	y	0.20	24	94	24	94	y	0.12	34	240	34	240	y	0.11	13	109	13	109	y	0.18	40	184	40	184	y	0.13	47	320	47	320	y	0.14	36	223	36	223	y	0.15	42	247	42	247	y	ENSMUSG00000058833.12	Rex1bd	chr8	protein_coding	required for excision 1-B domain containing
known_NIR_18906	chr8	70962281	70962988	-	70962281	70962768	A5SS	ENSMUST00000140679.8	known	0.86	154	26	154	26	y	0.82	146	33	146	33	y	0.79	177	47	177	47	y	0.80	144	36	144	36	y	0.79	203	53	203	53	y	0.82	114	25	114	25	y	0.78	215	61	215	61	y	0.89	108	13	108	13	y	0.81	152	36	152	36	y	0.73	194	72	194	72	y	0.76	178	56	178	56	y	0.79	188	50	188	50	y	ENSMUSG00000090137.9	Uba52	chr8	protein_coding	ubiquitin A-52 residue ribosomal protein fusion product 1
known_NIR_18907	chr8	70962281	70962988	-	70962284	70962988	A3SS	ENSMUST00000125184.8	known	0.09	154	1513	154	1513	y	0.08	146	1680	146	1680	y	0.10	177	1656	177	1656	y	0.09	144	1381	144	1381	y	0.09	203	2115	203	2115	y	0.09	114	1185	114	1185	y	0.09	215	2097	215	2097	y	0.09	108	1058	108	1058	y	0.10	152	1374	152	1374	y	0.08	194	2106	194	2106	y	0.09	178	1867	178	1867	y	0.09	188	1852	188	1852	y	ENSMUSG00000090137.9	Uba52	chr8	protein_coding	ubiquitin A-52 residue ribosomal protein fusion product 1
known_NIR_18908	chr8	70962284	70962768	-	70962281	70962768	A3SS	ENSMUST00000140679.8	known	0.88	185	26	185	26	y	0.88	235	33	235	33	y	0.86	280	47	280	47	y	0.85	197	36	197	36	y	0.82	241	53	241	53	y	0.82	111	25	111	25	y	0.78	222	61	222	61	y	0.89	104	13	104	13	y	0.82	167	36	167	36	y	0.79	267	72	267	72	y	0.81	242	56	242	56	y	0.83	243	50	243	50	y	ENSMUSG00000090137.9	Uba52	chr8	protein_coding	ubiquitin A-52 residue ribosomal protein fusion product 1
known_NIR_18909	chr8	70962284	70962988	-	70962284	70962768	A5SS	ENSMUST00000129909.8	known	0.89	1513	185	1513	185	y	0.88	1680	235	1680	235	y	0.86	1656	280	1656	280	y	0.88	1381	197	1381	197	y	0.90	2115	241	2115	241	y	0.91	1185	111	1185	111	y	0.90	2097	222	2097	222	y	0.91	1058	104	1058	104	y	0.89	1374	167	1374	167	y	0.89	2106	267	2106	267	y	0.89	1867	242	1867	242	y	0.88	1852	243	1852	243	y	ENSMUSG00000090137.9	Uba52	chr8	protein_coding	ubiquitin A-52 residue ribosomal protein fusion product 1
known_NIR_18910	chr8	70962284	70963334	-	70962284	70962768	5pMXE	ENSMUST00000129909.8	known	0.04	8	185	8	185	y	0.02	4	235	4	235	y	0.02	7	280	7	280	y	0.01	2	197	2	197	y	0.01	3	241	3	241	y	0.00	0	111	0	111	n	0.02	5	222	5	222	y	0.00	0	104	0	104	n	0.02	4	167	4	167	y	0.02	6	267	6	267	y	0.00	0	242	0	242	n	0.01	2	243	2	243	y	ENSMUSG00000090137.9	Uba52	chr8	protein_coding	ubiquitin A-52 residue ribosomal protein fusion product 1
known_NIR_18911	chr8	70962284	70963334	-	70962284	70962988	5pMXE	ENSMUST00000125184.8	known	0.01	8	1513	8	1513	y	0.00	4	1680	4	1680	y	0.00	7	1656	7	1656	y	0.00	2	1381	2	1381	y	0.00	3	2115	3	2115	y	0.00	0	1185	0	1185	n	0.00	5	2097	5	2097	y	0.00	0	1058	0	1058	n	0.00	4	1374	4	1374	y	0.00	6	2106	6	2106	y	0.00	0	1867	0	1867	n	0.00	2	1852	2	1852	y	ENSMUSG00000090137.9	Uba52	chr8	protein_coding	ubiquitin A-52 residue ribosomal protein fusion product 1
known_NIR_18912	chr8	70962284	70968045	-	70962284	70962768	5pMXE	ENSMUST00000129909.8	known	0.01	2	185	2	185	y	0.02	4	235	4	235	y	0.01	2	280	2	280	y	0.01	2	197	2	197	y	0.03	8	241	8	241	y	0.00	0	111	0	111	n	0.05	11	222	11	222	y	0.02	2	104	2	104	y	0.02	4	167	4	167	y	0.03	8	267	8	267	y	0.03	8	242	8	242	y	0.02	5	243	5	243	y	ENSMUSG00000090137.9	Uba52	chr8	protein_coding	ubiquitin A-52 residue ribosomal protein fusion product 1
known_NIR_18913	chr8	70962284	70968045	-	70962284	70962988	5pMXE	ENSMUST00000125184.8	known	0.00	2	1513	2	1513	y	0.00	4	1680	4	1680	y	0.00	2	1656	2	1656	y	0.00	2	1381	2	1381	y	0.00	8	2115	8	2115	y	0.00	0	1185	0	1185	n	0.01	11	2097	11	2097	y	0.00	2	1058	2	1058	y	0.00	4	1374	4	1374	y	0.00	8	2106	8	2106	y	0.00	8	1867	8	1867	y	0.00	5	1852	5	1852	y	ENSMUSG00000090137.9	Uba52	chr8	protein_coding	ubiquitin A-52 residue ribosomal protein fusion product 1
known_NIR_18914	chr8	70962284	70968045	-	70962284	70963334	5pMXE	ENSMUST00000135446.8	known	0.20	2	8	2	8	y	0.50	4	4	4	4	n	0.22	2	7	2	7	n	0.50	2	2	2	2	n	0.73	8	3	8	3	y	-	-	-	-	-	-	0.69	11	5	11	5	y	1.00	2	0	2	0	n	0.50	4	4	4	4	n	0.57	8	6	8	6	y	1.00	8	0	8	0	n	0.71	5	2	5	2	n	ENSMUSG00000090137.9	Uba52	chr8	protein_coding	ubiquitin A-52 residue ribosomal protein fusion product 1
known_NIR_18915	chr8	70966818	70968045	-	70962284	70968045	A3SS	ENSMUST00000121623.8	known	0.98	115	2	115	2	y	0.97	133	4	133	4	y	0.98	95	2	95	2	y	0.98	111	2	111	2	y	0.95	155	8	155	8	y	1.00	74	0	74	0	n	0.94	163	11	163	11	y	0.98	86	2	86	2	y	0.97	114	4	114	4	y	0.97	226	8	226	8	y	0.95	160	8	160	8	y	0.97	162	5	162	5	y	ENSMUSG00000055553.17	Kxd1	chr8	protein_coding	KxDL motif containing 1
known_NIR_18916	chr8	70966818	70968045	-	70967398	70968045	3pMXE	ENSMUST00000117580.8	known	0.93	115	9	115	9	y	0.96	133	5	133	5	y	0.98	95	2	95	2	y	0.91	111	11	111	11	y	0.94	155	10	155	10	y	0.94	74	5	74	5	y	0.96	163	7	163	7	y	0.93	86	6	86	6	y	0.97	114	3	114	3	y	0.98	226	5	226	5	y	0.94	160	10	160	10	y	0.96	162	6	162	6	y	ENSMUSG00000055553.17	Kxd1	chr8	protein_coding	KxDL motif containing 1
known_NIR_18917	chr8	70966818;70967398	70967245;70968045	-	70966818	70968045	cassetteExon	ENSMUST00000093456.12	known	0.05	5.5	115	2;9	115	y	0.02	2.5	133	0;5	133	n	0.01	1.0	95	0;2	95	n	0.06	7.0	111	3;11	111	y	0.03	5.5	155	1;10	155	n	0.03	2.5	74	0;5	74	n	0.02	4.0	163	1;7	163	n	0.05	4.5	86	3;6	86	y	0.03	3.0	114	3;3	114	y	0.01	3.0	226	1;5	226	n	0.04	6.0	160	2;10	160	y	0.02	3.5	162	1;6	162	n	ENSMUSG00000055553.17	Kxd1	chr8	protein_coding	KxDL motif containing 1
known_NIR_18918	chr8	70967398	70968045	-	70962284	70968045	A3SS	ENSMUST00000121623.8	known	0.82	9	2	9	2	y	0.56	5	4	5	4	n	0.50	2	2	2	2	n	0.85	11	2	11	2	y	0.56	10	8	10	8	y	1.00	5	0	5	0	n	0.39	7	11	7	11	y	0.75	6	2	6	2	n	0.43	3	4	3	4	n	0.38	5	8	5	8	y	0.56	10	8	10	8	y	0.55	6	5	6	5	y	ENSMUSG00000055553.17	Kxd1	chr8	protein_coding	KxDL motif containing 1
known_NIR_18919	chr8	70972711	70973138	-	70972711	70975828	A5SS	ENSMUST00000118850.8	known	0.16	3	16	3	16	y	0.45	5	6	5	6	y	0.20	2	8	2	8	y	0.19	4	17	4	17	y	0.26	5	14	5	14	y	0.12	1	7	1	7	n	0.30	3	7	3	7	y	0.43	3	4	3	4	n	0.22	2	7	2	7	n	0.24	4	13	4	13	y	0.57	4	3	4	3	n	0.22	6	21	6	21	y	ENSMUSG00000055553.17	Kxd1	chr8	protein_coding	KxDL motif containing 1
known_NIR_18920	chr8	70972711	70973138	-	70972711	70980295	A5SS	ENSMUST00000138260.8	known	0.43	3	4	3	4	n	0.26	5	14	5	14	y	0.13	2	13	2	13	y	0.31	4	9	4	9	y	0.31	5	11	5	11	y	0.14	1	6	1	6	n	0.20	3	12	3	12	y	0.27	3	8	3	8	y	0.20	2	8	2	8	y	0.29	4	10	4	10	y	0.40	4	6	4	6	y	0.50	6	6	6	6	y	ENSMUSG00000055553.17	Kxd1	chr8	protein_coding	KxDL motif containing 1
known_NIR_18921	chr8	70972711	70975828	-	70972711	70975713	5pMXE	ENSMUST00000121623.8	known	0.24	16	52	16	52	y	0.12	6	46	6	46	y	0.14	8	49	8	49	y	0.26	17	49	17	49	y	0.17	14	69	14	69	y	0.21	7	27	7	27	y	0.09	7	68	7	68	y	0.10	4	35	4	35	y	0.12	7	51	7	51	y	0.16	13	67	13	67	y	0.04	3	66	3	66	y	0.21	21	80	21	80	y	ENSMUSG00000055553.17	Kxd1	chr8	protein_coding	KxDL motif containing 1
known_NIR_18922	chr8	70972711	70975828	-	70972711	70980295	A5SS	ENSMUST00000138260.8	known	0.80	16	4	16	4	y	0.30	6	14	6	14	y	0.38	8	13	8	13	y	0.65	17	9	17	9	y	0.56	14	11	14	11	y	0.54	7	6	7	6	y	0.37	7	12	7	12	y	0.33	4	8	4	8	y	0.47	7	8	7	8	y	0.57	13	10	13	10	y	0.33	3	6	3	6	n	0.78	21	6	21	6	y	ENSMUSG00000055553.17	Kxd1	chr8	protein_coding	KxDL motif containing 1
known_NIR_18923	chr8	70972711	70980295	-	70972711	70975713	5pMXE	ENSMUST00000121623.8	known	0.07	4	52	4	52	y	0.23	14	46	14	46	y	0.21	13	49	13	49	y	0.16	9	49	9	49	y	0.14	11	69	11	69	y	0.18	6	27	6	27	y	0.15	12	68	12	68	y	0.19	8	35	8	35	y	0.14	8	51	8	51	y	0.13	10	67	10	67	y	0.08	6	66	6	66	y	0.07	6	80	6	80	y	ENSMUSG00000055553.17	Kxd1	chr8	protein_coding	KxDL motif containing 1
known_NIR_18924	chr8	70980685	70982041	+	70980486	70982041	A5SS	ENSMUST00000119353.9	known	0.50	181	184	181	184	y	0.45	171	206	171	206	y	0.43	208	278	208	278	y	0.43	164	221	164	221	y	0.42	258	362	258	362	y	0.39	116	184	116	184	y	0.47	234	262	234	262	y	0.47	121	134	121	134	y	0.44	152	197	152	197	y	0.47	284	321	284	321	y	0.44	207	263	207	263	y	0.41	203	290	203	290	y	ENSMUSG00000019428.17	Fkbp8	chr8	protein_coding	FK506 binding protein 8
known_NIR_18925	chr8	70981916	70982041	+	70980486	70982041	A5SS	ENSMUST00000119353.9	known	0.05	10	184	10	184	y	0.08	18	206	18	206	y	0.07	21	278	21	278	y	0.09	21	221	21	221	y	0.08	30	362	30	362	y	0.07	14	184	14	184	y	0.06	18	262	18	262	y	0.09	13	134	13	134	y	0.06	12	197	12	197	y	0.10	35	321	35	321	y	0.08	22	263	22	263	y	0.06	20	290	20	290	y	ENSMUSG00000019428.17	Fkbp8	chr8	protein_coding	FK506 binding protein 8
known_NIR_18926	chr8	70981916	70982041	+	70980685	70982041	A5SS	ENSMUST00000119698.8	known	0.05	10	181	10	181	y	0.10	18	171	18	171	y	0.09	21	208	21	208	y	0.11	21	164	21	164	y	0.10	30	258	30	258	y	0.11	14	116	14	116	y	0.07	18	234	18	234	y	0.10	13	121	13	121	y	0.07	12	152	12	152	y	0.11	35	284	35	284	y	0.10	22	207	22	207	y	0.09	20	203	20	203	y	ENSMUSG00000019428.17	Fkbp8	chr8	protein_coding	FK506 binding protein 8
known_NIR_18927	chr8	70983923	70984172	+	70983923	70984175	A3SS	ENSMUST00000119353.9	known	0.83	437	88	437	88	y	0.80	490	122	490	122	y	0.83	561	118	561	118	y	0.82	506	110	506	110	y	0.84	655	128	655	128	y	0.81	303	71	303	71	y	0.80	556	143	556	143	y	0.85	285	51	285	51	y	0.83	411	82	411	82	y	0.82	734	165	734	165	y	0.81	522	119	522	119	y	0.84	563	106	563	106	y	ENSMUSG00000019428.17	Fkbp8	chr8	protein_coding	FK506 binding protein 8
known_NIR_18928	chr8	70986844	70987038	+	70986844	70987133	A3SS	ENSMUST00000119353.9	known	0.00	0	933	0	933	n	0.00	5	1084	5	1084	y	0.01	6	1108	6	1108	y	0.00	4	937	4	937	y	0.00	7	1424	7	1424	y	0.01	3	531	3	531	y	0.00	4	1204	4	1204	y	0.01	4	574	4	574	y	0.01	7	837	7	837	y	0.01	11	1558	11	1558	y	0.00	5	1200	5	1200	y	0.00	4	1119	4	1119	y	ENSMUSG00000019428.17	Fkbp8	chr8	protein_coding	FK506 binding protein 8
known_NIR_18929	chr8	70992491	71025513	+	70992142	71025513	A5SS	ENSMUST00000210155.2	known	1.00	64	0	64	0	n	1.00	38	0	38	0	n	1.00	81	0	81	0	n	1.00	81	0	81	0	n	1.00	127	0	127	0	n	1.00	43	0	43	0	n	1.00	89	0	89	0	n	0.96	48	2	48	2	y	1.00	68	0	68	0	n	1.00	81	0	81	0	n	1.00	34	0	34	0	n	1.00	77	0	77	0	n	ENSMUSG00000070002.8	Ell	chr8	protein_coding	elongation factor RNA polymerase II
known_NIR_18930	chr8	71047193	71047473	+	71047193	71047270	A3SS	ENSMUST00000210358.2	known	0.00	0	82	0	82	n	0.03	3	98	3	98	y	0.01	1	129	1	129	n	0.00	0	103	0	103	n	0.00	0	162	0	162	n	0.03	1	36	1	36	n	0.01	1	74	1	74	n	0.00	0	74	0	74	n	0.00	0	61	0	61	n	0.00	0	107	0	107	n	0.00	0	52	0	52	n	0.00	0	38	0	38	n	ENSMUSG00000019139.11	Isyna1	chr8	protein_coding	myo-inositol 1-phosphate synthase A1
known_NIR_18931	chr8	71047193	71047473	+	71047398	71047473	A5SS	ENSMUST00000210005.2	known	0.00	0	143	0	143	n	0.02	3	193	3	193	y	0.00	1	201	1	201	n	0.00	0	170	0	170	n	0.00	0	257	0	257	n	0.01	1	82	1	82	n	0.01	1	131	1	131	n	0.00	0	115	0	115	n	0.00	0	87	0	87	n	0.00	0	195	0	195	n	0.00	0	82	0	82	n	0.00	0	63	0	63	n	ENSMUSG00000019139.11	Isyna1	chr8	protein_coding	myo-inositol 1-phosphate synthase A1
known_NIR_18932	chr8	71047193;71047398	71047270;71047473	+	71047193	71047473	cassetteExon	ENSMUST00000211117.2	known	1.00	112.5	0	82;143	0	n	0.98	145.5	3	98;193	3	y	0.99	165.0	1	129;201	1	n	1.00	136.5	0	103;170	0	n	1.00	209.5	0	162;257	0	n	0.98	59.0	1	36;82	1	n	0.99	102.5	1	74;131	1	n	1.00	94.5	0	74;115	0	n	1.00	74.0	0	61;87	0	n	1.00	151.0	0	107;195	0	n	1.00	67.0	0	52;82	0	n	1.00	50.5	0	38;63	0	n	ENSMUSG00000019139.11	Isyna1	chr8	protein_coding	myo-inositol 1-phosphate synthase A1
known_NIR_18933	chr8	71050418	71050547	-	71050418	71050663	A5SS	ENSMUST00000049908.11	known	0.19	3	13	3	13	y	0.00	0	23	0	23	n	0.10	2	18	2	18	y	0.00	0	10	0	10	n	0.13	3	20	3	20	y	0.00	0	5	0	5	n	0.00	0	17	0	17	n	0.14	2	12	2	12	y	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.20	2	8	2	8	y	0.20	2	8	2	8	y	ENSMUSG00000070003.8	Ssbp4	chr8	protein_coding	single stranded DNA binding protein 4
known_NIR_18934	chr8	71052407	71053046	-	71052407	71052490	5pMXE	ENSMUST00000210699.2	known	0.17	1	5	1	5	n	0.36	5	9	5	9	y	0.33	7	14	7	14	y	0.40	2	3	2	3	n	0.33	7	14	7	14	y	0.31	4	9	4	9	y	0.39	11	17	11	17	y	0.83	5	1	5	1	n	0.33	1	2	1	2	n	0.50	9	9	9	9	y	0.12	1	7	1	7	n	0.14	1	6	1	6	n	ENSMUSG00000070003.8	Ssbp4	chr8	protein_coding	single stranded DNA binding protein 4
known_NIR_18935	chr8	71052407	71053046	-	71052407;71052549	71052490;71053046	ES	ENSMUST00000049908.11	known	0.11	1	8.0	1	5;11	n	0.38	5	8.0	5	9;7	y	0.36	7	12.5	7	14;11	y	0.50	2	2.0	2	3;1	n	0.38	7	11.5	7	14;9	y	0.31	4	9.0	4	9;9	y	0.45	11	13.5	11	17;10	y	0.77	5	1.5	5	1;2	n	0.20	1	4.0	1	2;6	n	0.50	9	9.0	9	9;9	y	0.13	1	6.5	1	7;6	n	0.14	1	6.0	1	6;6	n	ENSMUSG00000070003.8	Ssbp4	chr8	protein_coding	single stranded DNA binding protein 4
known_NIR_18936	chr8	71052407;71052712	71052490;71053046	-	71052407	71053046	cassetteExon	ENSMUST00000211608.2	known	0.80	4.0	1	5;3	1	n	0.47	4.5	5	9;0	5	n	0.55	8.5	7	14;3	7	y	0.43	1.5	2	3;0	2	n	0.53	8.0	7	14;2	7	y	0.56	5.0	4	9;1	4	n	0.44	8.5	11	17;0	11	n	0.09	0.5	5	1;0	5	n	0.50	1.0	1	2;0	1	n	0.33	4.5	9	9;0	9	n	0.80	4.0	1	7;1	1	n	0.82	4.5	1	6;3	1	n	ENSMUSG00000070003.8	Ssbp4	chr8	protein_coding	single stranded DNA binding protein 4
known_NIR_18937	chr8	71052549;71052712	71052659;71053046	-	71052549	71053046	cassetteExon	ENSMUST00000049908.11	known	0.15	2.0	11	1;3	11	n	0.00	0.0	7	0;0	7	n	0.12	1.5	11	0;3	11	n	0.00	0.0	1	0;0	1	n	0.10	1.0	9	0;2	9	n	0.10	1.0	9	1;1	9	n	0.00	0.0	10	0;0	10	n	0.00	0.0	2	0;0	2	n	0.00	0.0	6	0;0	6	n	0.05	0.5	9	1;0	9	n	0.08	0.5	6	0;1	6	n	0.29	2.5	6	2;3	6	y	ENSMUSG00000070003.8	Ssbp4	chr8	protein_coding	single stranded DNA binding protein 4
known_NIR_18938	chr8	71054966	71055085	-	71054966	71055051	A5SS	ENSMUST00000049908.11	known	0.15	2	11	2	11	y	0.08	2	23	2	23	y	0.05	1	18	1	18	n	0.12	2	15	2	15	y	0.00	0	24	0	24	n	0.00	0	17	0	17	n	0.00	0	27	0	27	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.08	1	12	1	12	n	0.00	0	16	0	16	n	ENSMUSG00000070003.8	Ssbp4	chr8	protein_coding	single stranded DNA binding protein 4
known_NIR_18939	chr8	71104064	71110078	-	71104064;71105171	71105055;71110078	ES	ENSMUST00000070173.9	known	0.00	0	137.0	0	159;115	n	0.00	0	90.5	0	102;79	n	0.01	1	135.5	1	151;120	n	0.02	3	172.0	3	192;152	y	0.00	0	167.0	0	176;158	n	0.01	1	70.0	1	84;56	n	0.02	3	145.5	3	172;119	y	0.00	0	84.5	0	96;73	n	0.02	3	121.0	3	116;126	y	0.01	1	181.0	1	211;151	n	0.00	0	147.5	0	152;143	n	0.03	4	142.0	4	154;130	y	ENSMUSG00000056204.9	Pgpep1	chr8	protein_coding	pyroglutamyl-peptidase I
known_NIR_18940	chr8	71104064	71110078	-	71105171	71110078	A3SS&ES	ENSMUST00000211715.2	known	0.00	0	115	0	115	n	0.00	0	79	0	79	n	0.01	1	120	1	120	n	0.02	3	152	3	152	y	0.00	0	158	0	158	n	0.02	1	56	1	56	n	0.02	3	119	3	119	y	0.00	0	73	0	73	n	0.02	3	126	3	126	y	0.01	1	151	1	151	n	0.00	0	143	0	143	n	0.03	4	130	4	130	y	ENSMUSG00000056204.9	Pgpep1	chr8	protein_coding	pyroglutamyl-peptidase I
known_NIR_18941	chr8	71105171;71107152	71107084;71110078	-	71105171	71110078	cassetteExon	ENSMUST00000070173.9	known	0.03	4.0	115	4;4	115	y	0.01	1.0	79	1;1	79	n	0.00	0.5	120	1;0	120	n	0.01	2.0	152	4;0	152	n	0.02	3.0	158	2;4	158	y	0.04	2.5	56	0;5	56	n	0.02	2.0	119	1;3	119	n	0.02	1.5	73	1;2	73	n	0.00	0.5	126	1;0	126	n	0.02	3.5	151	4;3	151	y	0.04	6.0	143	3;9	143	y	0.01	1.5	130	3;0	130	n	ENSMUSG00000056204.9	Pgpep1	chr8	protein_coding	pyroglutamyl-peptidase I
known_NIR_18942	chr8	71110130	71112260	-	71110130	71111428	5pMXE	ENSMUST00000210459.2	known	0.95	92	5	92	5	y	0.97	72	2	72	2	y	0.96	97	4	97	4	y	0.96	149	6	149	6	y	0.96	141	6	141	6	y	0.95	41	2	41	2	y	0.98	111	2	111	2	y	0.98	52	1	52	1	n	0.96	107	5	107	5	y	0.97	152	4	152	4	y	1.00	134	0	134	0	n	0.94	100	6	100	6	y	ENSMUSG00000056204.9	Pgpep1	chr8	protein_coding	pyroglutamyl-peptidase I
known_NIR_18943	chr8	71110130	71112951	-	71110130	71111428	5pMXE	ENSMUST00000210459.2	known	0.29	2	5	2	5	n	0.00	0	2	0	2	n	0.33	2	4	2	4	n	0.14	1	6	1	6	n	0.40	4	6	4	6	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.20	1	4	1	4	n	1.00	2	0	2	0	n	0.00	0	6	0	6	n	ENSMUSG00000056204.9	Pgpep1	chr8	protein_coding	pyroglutamyl-peptidase I
known_NIR_18944	chr8	71110130	71112951	-	71110130	71112260	5pMXE	ENSMUST00000070173.9	known	0.02	2	92	2	92	y	0.00	0	72	0	72	n	0.02	2	97	2	97	y	0.01	1	149	1	149	n	0.03	4	141	4	141	y	0.00	0	41	0	41	n	0.00	0	111	0	111	n	0.00	0	52	0	52	n	0.00	0	107	0	107	n	0.01	1	152	1	152	n	0.01	2	134	2	134	y	0.00	0	100	0	100	n	ENSMUSG00000056204.9	Pgpep1	chr8	protein_coding	pyroglutamyl-peptidase I
known_NIR_18945	chr8	71110130;71111542	71111428;71112260	-	71110130	71112260	cassetteExon	ENSMUST00000070173.9	known	0.04	3.5	92	5;2	92	y	0.01	1.0	72	2;0	72	n	0.02	2.0	97	4;0	97	n	0.03	4.5	149	6;3	149	y	0.03	4.0	141	6;2	141	y	0.02	1.0	41	2;0	41	n	0.01	1.0	111	2;0	111	n	0.01	0.5	52	1;0	52	n	0.02	2.5	107	5;0	107	n	0.01	2.0	152	4;0	152	n	0.00	0.0	134	0;0	134	n	0.03	3.0	100	6;0	100	n	ENSMUSG00000056204.9	Pgpep1	chr8	protein_coding	pyroglutamyl-peptidase I
known_NIR_18946	chr8	71130508	71130604	+	71130526	71130604	A5SS	ENSMUST00000034311.15	known	0.00	1	209	1	209	n	0.00	1	236	1	236	n	0.01	2	226	2	226	y	0.00	1	235	1	235	n	0.02	5	230	5	230	y	0.02	3	152	3	152	y	0.03	8	273	8	273	y	0.03	3	95	3	95	y	0.02	4	193	4	193	y	0.01	3	325	3	325	y	0.00	1	268	1	268	n	0.02	4	250	4	250	y	ENSMUSG00000031848.16	Lsm4	chr8	protein_coding	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated
known_NIR_18947	chr8	71176866	71177164	+	71177017	71177164	A5SS	ENSMUST00000123739.8	known	1.00	11	0	11	0	n	1.00	2	0	2	0	n	-	-	-	-	-	-	0.87	13	2	13	2	y	0.80	16	4	16	4	y	0.33	2	4	2	4	n	1.00	4	0	4	0	n	0.83	10	2	10	2	y	1.00	3	0	3	0	n	0.87	13	2	13	2	y	0.77	10	3	10	3	y	0.85	22	4	22	4	y	ENSMUSG00000031842.16	Pde4c	chr8	protein_coding	phosphodiesterase 4C, cAMP specific
known_NIR_18948	chr8	71201682	71201872	+	71201682	71201974	A3SS	ENSMUST00000034307.14	known	1.00	12	0	12	0	n	1.00	19	0	19	0	n	0.70	7	3	7	3	y	1.00	17	0	17	0	n	1.00	17	0	17	0	n	1.00	7	0	7	0	n	0.90	26	3	26	3	y	1.00	5	0	5	0	n	1.00	20	0	20	0	n	0.94	34	2	34	2	y	1.00	22	0	22	0	n	1.00	29	0	29	0	n	ENSMUSG00000031842.16	Pde4c	chr8	protein_coding	phosphodiesterase 4C, cAMP specific
known_NIR_18949	chr8	71207512	71208503	+	71207517	71208503	A5SS	ENSMUST00000110093.9	known	0.50	4	4	4	4	n	0.75	6	2	6	2	n	1.00	5	0	5	0	n	0.80	12	3	12	3	y	0.67	6	3	6	3	n	0.00	0	1	0	1	n	1.00	5	0	5	0	n	0.86	6	1	6	1	n	1.00	1	0	1	0	n	0.89	8	1	8	1	n	0.85	17	3	17	3	y	0.83	5	1	5	1	n	ENSMUSG00000031840.15	Rab3a	chr8	protein_coding	RAB3A, member RAS oncogene family
known_NIR_18950	chr8	71212113;71212899	71212739;71213014	-	71212113	71213014	cassetteExon	ENSMUST00000038626.10	known	0.06	4.0	61	6;2	61	y	0.06	3.5	60	2;5	60	y	0.09	4.0	40	2;6	40	y	0.04	2.5	59	2;3	59	y	0.06	4.5	65	8;1	65	n	0.08	2.5	30	2;3	30	y	0.03	2.0	74	1;3	74	n	0.07	2.5	32	2;3	32	y	0.11	6.0	50	6;6	50	y	0.10	9.5	84	7;12	84	y	0.11	6.5	53	5;8	53	y	0.09	5.5	58	5;6	58	y	ENSMUSG00000035559.10	Mpv17l2	chr8	protein_coding	MPV17 mitochondrial membrane protein-like 2
known_NIR_18951	chr8	71213180	71213366	-	71213184	71213366	A3SS	ENSMUST00000038626.10	known	0.00	0	38	0	38	n	0.00	0	29	0	29	n	0.00	0	48	0	48	n	0.00	0	78	0	78	n	0.00	0	60	0	60	n	0.00	0	32	0	32	n	0.05	4	76	4	76	y	0.00	0	27	0	27	n	0.06	3	51	3	51	y	0.00	0	81	0	81	n	0.10	6	53	6	53	y	0.07	6	76	6	76	y	ENSMUSG00000035559.10	Mpv17l2	chr8	protein_coding	MPV17 mitochondrial membrane protein-like 2
known_NIR_18952	chr8	71225339;71225560	71225465;71227300	-	71225339	71227300	cassetteExon	ENSMUST00000034296.15	known	0.11	3.5	29	6;1	29	n	0.03	0.5	16	1;0	16	n	0.09	2.5	26	2;3	26	y	0.09	3.5	36	2;5	36	y	0.02	1.0	43	2;0	43	n	0.09	1.5	15	3;0	15	n	0.06	2.0	34	4;0	34	n	0.05	1.0	20	2;0	20	n	0.07	1.5	20	3;0	20	n	0.03	1.5	42	3;0	42	n	0.03	1.0	28	2;0	28	n	0.03	1.0	35	2;0	35	n	ENSMUSG00000031834.16	Pik3r2	chr8	protein_coding	phosphoinositide-3-kinase regulatory subunit 2
known_NIR_18953	chr8	71232581	71232917	-	71232581	71232839	A5SS	ENSMUST00000212140.2	known	0.70	33	14	33	14	y	0.68	25	12	25	12	y	0.59	22	15	22	15	y	0.81	21	5	21	5	y	0.56	22	17	22	17	y	0.62	8	5	8	5	y	0.61	20	13	20	13	y	0.47	8	9	8	9	y	0.82	14	3	14	3	y	0.82	23	5	23	5	y	0.73	19	7	19	7	y	0.70	21	9	21	9	y	ENSMUSG00000031833.11	Mast3	chr8	protein_coding	microtubule associated serine/threonine kinase 3
known_NIR_18954	chr8	71241928;71242347	71242327;71242492	-	71241928	71242492	cassetteExon	ENSMUST00000166004.3	known	0.05	1.5	29	1;2	29	n	0.02	0.5	22	1;0	22	n	0.02	0.5	23	1;0	23	n	0.10	2.0	19	2;2	19	y	0.11	2.5	21	2;3	21	y	0.24	3.5	11	4;3	11	y	0.17	2.5	12	3;2	12	y	0.19	2.5	11	3;2	11	y	0.00	0.0	11	0;0	11	n	0.09	3.0	32	3;3	32	y	0.15	3.0	17	4;2	17	y	0.00	0.0	17	0;0	17	n	ENSMUSG00000031833.11	Mast3	chr8	protein_coding	microtubule associated serine/threonine kinase 3
known_NIR_18955	chr8	71242561	71242641	-	71242564	71242641	A3SS	ENSMUST00000166004.3	known	0.00	0	23	0	23	n	0.23	5	17	5	17	y	0.16	3	16	3	16	y	0.16	3	16	3	16	y	0.21	7	27	7	27	y	0.31	4	9	4	9	y	0.35	6	11	6	11	y	0.27	4	11	4	11	y	0.00	0	11	0	11	n	0.20	5	20	5	20	y	0.00	0	11	0	11	n	0.39	7	11	7	11	y	ENSMUSG00000031833.11	Mast3	chr8	protein_coding	microtubule associated serine/threonine kinase 3
known_NIR_18956	chr8	71242729	71244870	-	71242729	71249357	A5SS	ENSMUST00000166004.3	known	0.12	2	15	2	15	y	0.00	0	8	0	8	n	0.05	1	20	1	20	n	0.00	0	17	0	17	n	0.00	0	19	0	19	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.11	1	8	1	8	n	0.00	0	9	0	9	n	ENSMUSG00000031833.11	Mast3	chr8	protein_coding	microtubule associated serine/threonine kinase 3
known_NIR_18957	chr8	71242729;71249446	71249357;71252102	-	71242729	71252102	cassetteExon	ENSMUST00000212757.2	known	1.00	9.5	0	15;4	0	n	1.00	5.5	0	8;3	0	n	0.83	10.0	2	20;0	2	n	0.85	11.0	2	17;5	2	y	0.86	12.5	2	19;6	2	y	0.60	3.0	2	6;0	2	n	1.00	7.5	0	13;2	0	n	0.44	4.0	5	8;0	5	n	0.67	4.0	2	6;2	2	y	0.68	10.5	5	12;9	5	y	0.80	8.0	2	8;8	2	y	0.60	6.0	4	9;3	4	y	ENSMUSG00000031833.11	Mast3	chr8	protein_coding	microtubule associated serine/threonine kinase 3
known_NIR_18958	chr8	71249446	71252102	-	71249446	71249544	5pMXE	ENSMUST00000166004.3	known	0.27	4	11	4	11	y	0.25	3	9	3	9	y	0.00	0	15	0	15	n	0.26	5	14	5	14	y	0.30	6	14	6	14	y	0.00	0	9	0	9	n	0.11	2	17	2	17	y	0.00	0	6	0	6	n	0.29	2	5	2	5	n	0.64	9	5	9	5	y	0.50	8	8	8	8	y	0.18	3	14	3	14	y	ENSMUSG00000031833.11	Mast3	chr8	protein_coding	microtubule associated serine/threonine kinase 3
known_NIR_18959	chr8	71269990	71272326	+	71269990;71272065	71271969;71272326	ES	ENSMUST00000000808.8	known	0.36	2	3.5	2	3;4	n	0.44	2	2.5	2	2;3	n	0.47	4	4.5	4	4;5	y	0.53	4	3.5	4	6;1	n	0.59	5	3.5	5	4;3	y	0.60	3	2.0	3	1;3	n	0.00	0	1.0	0	2;0	n	0.00	0	3.0	0	2;4	n	0.00	0	0.5	0	0;1	n	0.33	2	4.0	2	5;3	y	0.73	4	1.5	4	2;1	n	0.29	1	2.5	1	2;3	n	ENSMUSG00000000791.10	Il12rb1	chr8	protein_coding	interleukin 12 receptor, beta 1
known_NIR_18960	chr8	71299208	71300819	-	71299208	71299408	A5SS&ES	ENSMUST00000212243.2	known	1.00	10	0	10	0	n	0.90	9	1	9	1	n	-	-	-	-	-	-	1.00	6	0	6	0	n	0.94	15	1	15	1	n	1.00	1	0	1	0	n	0.75	12	4	12	4	y	1.00	8	0	8	0	n	1.00	2	0	2	0	n	1.00	4	0	4	0	n	0.89	17	2	17	2	y	1.00	7	0	7	0	n	ENSMUSG00000002908.18	Kcnn1	chr8	protein_coding	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1
known_NIR_18961	chr8	71299208	71300819	-	71299208;71299416	71299408;71300819	ES	ENSMUST00000110078.5	known	1.00	10	0.0	10	0;0	n	0.90	9	1.0	9	1;1	n	-	-	-	-	-	-	1.00	6	0.0	6	0;0	n	0.94	15	1.0	15	1;1	n	0.67	1	0.5	1	0;1	n	0.77	12	3.5	12	4;3	y	1.00	8	0.0	8	0;0	n	1.00	2	0.0	2	0;0	n	0.89	4	0.5	4	0;1	n	0.94	17	1.0	17	2;0	n	0.88	7	1.0	7	0;2	n	ENSMUSG00000002908.18	Kcnn1	chr8	protein_coding	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1
known_NIR_18962	chr8	71300946	71303244	-	71300946;71301532	71301422;71303244	ES	ENSMUST00000110081.10	known	0.00	0	5.5	0	5;6	n	0.12	1	7.0	1	7;7	n	0.33	1	2.0	1	2;2	n	0.08	1	12.0	1	15;9	n	0.06	1	17.0	1	18;16	n	0.00	0	1.0	0	2;0	n	0.07	1	13.0	1	13;13	n	0.00	0	3.0	0	4;2	n	0.14	1	6.0	1	8;4	n	0.00	0	14.0	0	15;13	n	0.17	2	10.0	2	9;11	y	0.26	3	8.5	3	7;10	y	ENSMUSG00000002908.18	Kcnn1	chr8	protein_coding	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1
known_NIR_18963	chr8	71322718	71325688	-	71322718	71326103	A5SS	ENSMUST00000007865.7	known	0.00	0	58	0	58	n	0.00	0	47	0	47	n	0.00	0	58	0	58	n	0.02	1	62	1	62	n	0.01	1	73	1	73	n	0.05	2	40	2	40	y	0.00	0	52	0	52	n	0.00	0	20	0	20	n	0.00	0	33	0	33	n	0.00	0	57	0	57	n	0.00	0	61	0	61	n	0.00	0	48	0	48	n	ENSMUSG00000007721.7	Ccdc124	chr8	protein_coding	coiled-coil domain containing 124
known_NIR_18964	chr8	71348689	71348790	-	71348689	71348777	A5SS	ENSMUST00000054220.10	known	0.00	0	3050	0	3050	n	0.00	0	3444	0	3444	n	0.00	0	3583	0	3583	n	0.01	34	2535	34	2535	y	0.00	0	3710	0	3710	n	0.00	0	1993	0	1993	n	0.00	0	4179	0	4179	n	0.02	31	1992	31	1992	y	0.00	0	2481	0	2481	n	0.00	0	3800	0	3800	n	0.00	0	3464	0	3464	n	0.00	0	3595	0	3595	n	ENSMUSG00000045128.10	Rpl18a	chr8	protein_coding	ribosomal protein L18A
known_NIR_18965	chr8	71348824	71350003	-	71348956	71350003	A3SS	ENSMUST00000054220.10	known	0.00	0	1411	0	1411	n	0.00	0	1467	0	1467	n	0.00	0	1802	0	1802	n	0.00	0	1347	0	1347	n	0.00	0	1963	0	1963	n	0.00	2	1013	2	1013	y	0.00	0	1916	0	1916	n	0.00	1	1030	1	1030	n	0.00	1	1305	1	1305	n	0.00	1	1872	1	1872	n	0.00	0	1700	0	1700	n	0.00	0	1621	0	1621	n	ENSMUSG00000045128.10	Rpl18a	chr8	protein_coding	ribosomal protein L18A
known_NIR_18966	chr8	71348956	71349977	-	71348956	71350003	A5SS	ENSMUST00000054220.10	known	0.00	7	1411	7	1411	y	0.01	9	1467	9	1467	y	0.00	6	1802	6	1802	y	0.00	5	1347	5	1347	y	0.01	15	1963	15	1963	y	0.00	4	1013	4	1013	y	0.00	4	1916	4	1916	y	0.00	4	1030	4	1030	y	0.00	6	1305	6	1305	y	0.01	11	1872	11	1872	y	0.01	9	1700	9	1700	y	0.00	8	1621	8	1621	y	ENSMUSG00000045128.10	Rpl18a	chr8	protein_coding	ribosomal protein L18A
known_NIR_18967	chr8	71708356	71709103	-	71708764	71709103	3pMXE	ENSMUST00000129455.2	known	0.00	0	16	0	16	n	0.07	1	14	1	14	n	0.05	2	37	2	37	y	0.06	1	17	1	17	n	0.00	0	9	0	9	n	0.00	0	18	0	18	n	0.07	1	13	1	13	n	0.00	0	14	0	14	n	0.08	1	11	1	11	n	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	ENSMUSG00000035439.14	Haus8	chr8	protein_coding	4HAUS augmin-like complex, subunit 8
known_NIR_18968	chr8	71708356;71708764	71708652;71709103	-	71708356	71709103	cassetteExon	ENSMUST00000123495.8	known	1.00	13.5	0	11;16	0	n	0.93	13.5	1	13;14	1	n	0.95	36.5	2	36;37	2	y	0.93	14.0	1	11;17	1	n	1.00	14.5	0	20;9	0	n	1.00	15.5	0	13;18	0	n	0.95	17.5	1	22;13	1	n	1.00	19.5	0	25;14	0	n	0.94	14.5	1	18;11	1	n	1.00	17.5	0	23;12	0	n	1.00	10.5	0	10;11	0	n	1.00	14.0	0	15;13	0	n	ENSMUSG00000035439.14	Haus8	chr8	protein_coding	4HAUS augmin-like complex, subunit 8
known_NIR_18969	chr8	71709198	71710000	-	71709195	71710000	A3SS	ENSMUST00000123495.8	known	0.84	16	3	16	3	y	1.00	17	0	17	0	n	0.96	27	1	27	1	n	0.90	19	2	19	2	y	1.00	12	0	12	0	n	1.00	17	0	17	0	n	1.00	12	0	12	0	n	1.00	18	0	18	0	n	1.00	7	0	7	0	n	0.92	12	1	12	1	n	0.82	14	3	14	3	y	1.00	18	0	18	0	n	ENSMUSG00000035439.14	Haus8	chr8	protein_coding	4HAUS augmin-like complex, subunit 8
known_NIR_18970	chr8	71715748	71724928	-	71715748;71721928	71721870;71724928	ES	ENSMUST00000123495.8	known	0.00	0	4.0	0	2;6	n	0.21	3	11.0	3	12;10	y	0.13	2	13.0	2	15;11	y	0.00	0	8.5	0	8;9	n	0.11	1	8.5	1	8;9	n	0.15	2	11.0	2	9;13	y	0.50	4	4.0	4	5;3	y	0.15	1	5.5	1	5;6	n	0.17	2	10.0	2	13;7	y	0.21	5	18.5	5	20;17	y	0.00	0	3.5	0	5;2	n	0.00	0	8.0	0	12;4	n	ENSMUSG00000035439.14	Haus8	chr8	protein_coding	4HAUS augmin-like complex, subunit 8
known_NIR_18971	chr8	71786475	71786960	+	71786475	71786957	A3SS	ENSMUST00000212935.2	known	0.13	2	13	2	13	y	0.20	1	4	1	4	n	0.17	8	39	8	39	y	0.48	10	11	10	11	y	0.13	4	27	4	27	y	0.26	5	14	5	14	y	0.19	4	17	4	17	y	0.16	4	21	4	21	y	0.33	3	6	3	6	n	0.30	7	16	7	16	y	0.09	1	10	1	10	n	0.35	7	13	7	13	y	ENSMUSG00000004677.18	Myo9b	chr8	protein_coding	myosin IXb
known_NIR_18972	chr8	71787038;71789609	71789520;71791551	+	71787038	71791551	cassetteExon	ENSMUST00000212935.2	known	0.93	12.5	1	23;2	1	n	0.71	5.0	2	7;3	2	y	0.74	19.5	7	35;4	7	y	0.92	11.0	1	17;5	1	n	0.75	18.0	6	30;6	6	y	0.57	6.5	5	11;2	5	y	0.63	8.5	5	15;2	5	y	0.84	16.0	3	26;6	3	y	0.68	10.5	5	15;6	5	y	0.69	9.0	4	11;7	4	y	0.82	4.5	1	7;2	1	n	0.72	13.0	5	21;5	5	y	ENSMUSG00000004677.18	Myo9b	chr8	protein_coding	myosin IXb
known_NIR_18973	chr8	71802839	71803571	+	71802833	71803571	A5SS	ENSMUST00000212935.2	known	0.22	4	14	4	14	y	0.00	0	16	0	16	n	0.26	13	37	13	37	y	0.14	3	18	3	18	y	0.13	7	45	7	45	y	0.37	10	17	10	17	y	0.22	10	36	10	36	y	0.17	6	30	6	30	y	0.14	2	12	2	12	y	0.15	6	35	6	35	y	0.26	6	17	6	17	y	0.12	4	29	4	29	y	ENSMUSG00000004677.18	Myo9b	chr8	protein_coding	myosin IXb
known_NIR_18974	chr8	71806779	71807161	+	71806779	71807158	A3SS	ENSMUST00000212935.2	known	0.72	29	11	29	11	y	0.83	19	4	19	4	y	0.55	38	31	38	31	y	0.47	17	19	17	19	y	0.77	57	17	57	17	y	0.77	36	11	36	11	y	0.64	25	14	25	14	y	0.57	27	20	27	20	y	0.74	17	6	17	6	y	0.63	37	22	37	22	y	0.62	15	9	15	9	y	0.73	35	13	35	13	y	ENSMUSG00000004677.18	Myo9b	chr8	protein_coding	myosin IXb
known_NIR_18975	chr8	71810880;71811307	71811260;71811607	+	71810880	71811607	cassetteExon	ENSMUST00000212935.2	known	0.45	16.5	20	16;17	20	y	0.66	25.0	13	23;27	13	y	0.61	46.0	30	46;46	30	y	0.67	20.5	10	20;21	10	y	0.54	29.0	25	25;33	25	y	0.76	35.0	11	35;35	11	y	0.80	40.0	10	37;43	10	y	0.72	23.0	9	22;24	9	y	0.50	18.0	18	20;16	18	y	0.79	30.0	8	36;24	8	y	0.56	22.0	17	18;26	17	y	0.59	20.5	14	20;21	14	y	ENSMUSG00000004677.18	Myo9b	chr8	protein_coding	myosin IXb
known_NIR_18976	chr8	71812096	71812202	+	71812096	71812308	A3SS	ENSMUST00000212935.2	known	0.67	6	3	6	3	n	0.33	4	8	4	8	y	0.50	14	14	14	14	y	0.30	6	14	6	14	y	0.19	5	21	5	21	y	0.38	3	5	3	5	n	0.32	6	13	6	13	y	0.35	6	11	6	11	y	0.38	5	8	5	8	y	0.37	7	12	7	12	y	0.62	5	3	5	3	n	0.47	8	9	8	9	y	ENSMUSG00000004677.18	Myo9b	chr8	protein_coding	myosin IXb
known_NIR_18977	chr8	71824629	71825393	+	71825277	71825393	5pMXE	ENSMUST00000126049.2	known	0.16	6	31	6	31	y	0.30	10	23	10	23	y	0.24	8	25	8	25	y	0.27	11	30	11	30	y	0.27	14	37	14	37	y	0.30	7	16	7	16	y	0.15	8	45	8	45	y	0.30	7	16	7	16	y	0.00	0	33	0	33	n	0.15	9	52	9	52	y	0.15	8	47	8	47	y	0.23	10	33	10	33	y	ENSMUSG00000002396.9	Ocel1	chr8	protein_coding	occludin/ELL domain containing 1
known_NIR_18978	chr8	71824629;71825277	71825112;71825393	+	71824629	71825393	cassetteExon	ENSMUST00000110051.2	known	0.83	28.5	6	26;31	6	y	0.73	27.0	10	31;23	10	y	0.74	22.5	8	20;25	8	y	0.71	27.0	11	24;30	11	y	0.71	33.5	14	30;37	14	y	0.73	19.0	7	22;16	7	y	0.85	47.0	8	49;45	8	y	0.71	17.5	7	19;16	7	y	1.00	40.0	0	47;33	0	n	0.86	55.5	9	59;52	9	y	0.86	49.5	8	52;47	8	y	0.77	33.5	10	34;33	10	y	ENSMUSG00000002396.9	Ocel1	chr8	protein_coding	occludin/ELL domain containing 1
known_NIR_18979	chr8	71827398	71828393	-	71827398	71828147	A5SS	ENSMUST00000155463.2	known	0.98	328	5	328	5	y	0.97	326	9	326	9	y	0.98	239	5	239	5	y	0.98	341	6	341	6	y	0.98	497	12	497	12	y	0.98	215	4	215	4	y	0.98	444	8	444	8	y	0.98	209	4	209	4	y	0.99	273	2	273	2	y	0.98	464	10	464	10	y	0.98	359	7	359	7	y	0.98	412	8	412	8	y	ENSMUSG00000002393.15	Nr2f6	chr8	protein_coding	nuclear receptor subfamily 2, group F, member 6
known_NIR_18980	chr8	71827398;71828212	71828147;71828393	-	71827398	71828393	cassetteExon	ENSMUST00000132630.2	known	0.02	8.0	328	5;11	328	y	0.02	7.5	326	9;6	326	y	0.02	5.0	239	5;5	239	y	0.01	5.0	341	6;4	341	y	0.02	12.0	497	12;12	497	y	0.02	5.5	215	4;7	215	y	0.02	11.0	444	8;14	444	y	0.02	3.5	209	4;3	209	y	0.01	2.5	273	2;3	273	y	0.01	7.0	464	10;4	464	y	0.02	8.0	359	7;9	359	y	0.01	6.0	412	8;4	412	y	ENSMUSG00000002393.15	Nr2f6	chr8	protein_coding	nuclear receptor subfamily 2, group F, member 6
known_NIR_18981	chr8	71828146	71828393	-	71827398	71828393	A3SS	ENSMUST00000132630.2	known	0.01	4	328	4	328	y	0.02	5	326	5	326	y	0.00	0	239	0	239	n	0.01	2	341	2	341	y	0.00	1	497	1	497	n	0.00	0	215	0	215	n	0.01	4	444	4	444	y	0.01	3	209	3	209	y	0.01	4	273	4	273	y	0.00	0	464	0	464	n	0.01	5	359	5	359	y	0.01	3	412	3	412	y	ENSMUSG00000002393.15	Nr2f6	chr8	protein_coding	nuclear receptor subfamily 2, group F, member 6
known_NIR_18982	chr8	71828212	71828393	-	71828146	71828393	A3SS	ENSMUST00000156270.2	known	0.73	11	4	11	4	y	0.55	6	5	6	5	y	1.00	5	0	5	0	n	0.67	4	2	4	2	n	0.92	12	1	12	1	n	1.00	7	0	7	0	n	0.78	14	4	14	4	y	0.50	3	3	3	3	n	0.43	3	4	3	4	n	1.00	4	0	4	0	n	0.64	9	5	9	5	y	0.57	4	3	4	3	n	ENSMUSG00000002393.15	Nr2f6	chr8	protein_coding	nuclear receptor subfamily 2, group F, member 6
known_NIR_18983	chr8	71831171	71833635	-	71831127	71833635	A3SS	ENSMUST00000002466.9	known	0.00	0	379	0	379	n	0.00	0	333	0	333	n	0.01	2	308	2	308	y	0.00	0	422	0	422	n	0.00	0	601	0	601	n	0.00	0	222	0	222	n	0.00	0	486	0	486	n	0.00	0	252	0	252	n	0.00	0	298	0	298	n	0.00	0	475	0	475	n	0.00	0	341	0	341	n	0.00	0	428	0	428	n	ENSMUSG00000002393.15	Nr2f6	chr8	protein_coding	nuclear receptor subfamily 2, group F, member 6
known_NIR_18984	chr8	71831200	71833635	-	71831127	71833635	A3SS	ENSMUST00000002466.9	known	0.02	7	379	7	379	y	0.01	2	333	2	333	y	0.00	0	308	0	308	n	0.01	5	422	5	422	y	0.01	9	601	9	601	y	0.00	0	222	0	222	n	0.01	6	486	6	486	y	0.00	1	252	1	252	n	0.01	2	298	2	298	y	0.00	0	475	0	475	n	0.02	6	341	6	341	y	0.00	0	428	0	428	n	ENSMUSG00000002393.15	Nr2f6	chr8	protein_coding	nuclear receptor subfamily 2, group F, member 6
known_NIR_18985	chr8	71843425	71843565	-	71843373	71843565	A3SS	ENSMUST00000212626.2	known	0.90	9	1	9	1	n	1.00	12	0	12	0	n	0.83	5	1	5	1	n	1.00	9	0	9	0	n	0.85	11	2	11	2	y	1.00	3	0	3	0	n	0.87	13	2	13	2	y	1.00	2	0	2	0	n	1.00	8	0	8	0	n	0.93	14	1	14	1	n	0.90	9	1	9	1	n	0.89	16	2	16	2	y	ENSMUSG00000034911.9	Ushbp1	chr8	protein_coding	USH1 protein network component harmonin binding protein 1
known_NIR_18986	chr8	71852451	71852609	+	71852451	71854324	A3SS	ENSMUST00000002473.10	known	0.00	0	208	0	208	n	0.01	3	208	3	208	y	0.00	0	211	0	211	n	0.00	0	187	0	187	n	0.01	1	186	1	186	n	0.01	1	117	1	117	n	0.00	0	238	0	238	n	0.00	0	110	0	110	n	0.00	0	161	0	161	n	0.00	0	257	0	257	n	0.01	3	218	3	218	y	0.01	2	259	2	259	y	ENSMUSG00000031820.10	Babam1	chr8	protein_coding	BRISC and BRCA1 A complex member 1
known_NIR_18987	chr8	71921969	71924681	+	71921969	71924685	A3SS	ENSMUST00000127885.2	known	0.93	39	3	39	3	y	0.83	19	4	19	4	y	0.86	44	7	44	7	y	0.85	23	4	23	4	y	0.80	39	10	39	10	y	0.81	26	6	26	6	y	0.86	30	5	30	5	y	0.85	23	4	23	4	y	0.84	21	4	21	4	y	0.83	25	5	25	5	y	0.75	30	10	30	10	y	0.76	28	9	28	9	y	ENSMUSG00000074247.11	Dda1	chr8	protein_coding	DET1 and DDB1 associated 1
known_NIR_18988	chr8	71921969	71924681	+	71921969;71922336	71922187;71924681	ES	ENSMUST00000147843.8	known	0.99	39	0.5	39	0;1	n	1.00	19	0.0	19	0;0	n	0.97	44	1.5	44	2;1	n	0.98	23	0.5	23	0;1	n	0.99	39	0.5	39	0;1	n	0.98	26	0.5	26	1;0	n	1.00	30	0.0	30	0;0	n	0.98	23	0.5	23	1;0	n	0.98	21	0.5	21	1;0	n	0.91	25	2.5	25	2;3	y	1.00	30	0.0	30	0;0	n	1.00	28	0.0	28	0;0	n	ENSMUSG00000074247.11	Dda1	chr8	protein_coding	DET1 and DDB1 associated 1
known_NIR_18989	chr8	71924761	71926419	+	71924761	71924839	3pMXE	ENSMUST00000147843.8	known	0.07	3	41	3	41	y	0.22	9	32	9	32	y	0.07	5	68	5	68	y	0.08	5	54	5	54	y	0.21	15	55	15	55	y	0.00	0	35	0	35	n	0.11	7	58	7	58	y	0.19	9	39	9	39	y	0.12	4	28	4	28	y	0.13	6	39	6	39	y	0.09	4	41	4	41	y	0.25	13	39	13	39	y	ENSMUSG00000074247.11	Dda1	chr8	protein_coding	DET1 and DDB1 associated 1
known_NIR_18990	chr8	71924761	71926419	+	71924761;71924890	71924839;71926419	ES	ENSMUST00000124745.8	known	0.06	3	47.0	3	41;53	y	0.20	9	35.5	9	32;39	y	0.07	5	70.5	5	68;73	y	0.08	5	56.0	5	54;58	y	0.22	15	52.0	15	55;49	y	0.00	0	41.0	0	35;47	n	0.10	7	64.5	7	58;71	y	0.20	9	36.0	9	39;33	y	0.11	4	31.5	4	28;35	y	0.14	6	37.0	6	39;35	y	0.08	4	47.5	4	41;54	y	0.23	13	42.5	13	39;46	y	ENSMUSG00000074247.11	Dda1	chr8	protein_coding	DET1 and DDB1 associated 1
known_NIR_18991	chr8	71924761	71926419	+	71924890	71926419	A5SS	ENSMUST00000098645.11	known	0.05	3	53	3	53	y	0.19	9	39	9	39	y	0.06	5	73	5	73	y	0.08	5	58	5	58	y	0.23	15	49	15	49	y	0.00	0	47	0	47	n	0.09	7	71	7	71	y	0.21	9	33	9	33	y	0.10	4	35	4	35	y	0.15	6	35	6	35	y	0.07	4	54	4	54	y	0.22	13	46	13	46	y	ENSMUSG00000074247.11	Dda1	chr8	protein_coding	DET1 and DDB1 associated 1
known_NIR_18992	chr8	71924761;71924890	71924839;71927132	+	71924761;71926480	71926419;71927132	MXE	ENSMUST00000130098.8	known	0.48	20.5	22.5	41;0	3;42	n	0.36	16.0	28.0	32;0	9;47	n	0.45	35.0	42.5	68;2	5;80	y	0.49	27.0	28.0	54;0	5;51	n	0.42	27.5	37.5	55;0	15;60	n	0.47	17.5	20.0	35;0	0;40	n	0.44	29.5	37.0	58;1	7;67	n	0.44	19.5	24.5	39;0	9;40	n	0.42	14.0	19.0	28;0	4;34	n	0.45	19.5	24.0	39;0	6;42	n	0.45	21.0	25.5	41;1	4;47	n	0.34	19.5	38.5	39;0	13;64	n	ENSMUSG00000074247.11	Dda1	chr8	protein_coding	DET1 and DDB1 associated 1
known_NIR_18993	chr8	71924890	71927132	+	71924890;71926480	71926419;71927132	ES	ENSMUST00000124745.8	known	0.00	0	47.5	0	53;42	n	0.00	0	43.0	0	39;47	n	0.03	2	76.5	2	73;80	y	0.00	0	54.5	0	58;51	n	0.00	0	54.5	0	49;60	n	0.00	0	43.5	0	47;40	n	0.01	1	69.0	1	71;67	n	0.00	0	36.5	0	33;40	n	0.00	0	34.5	0	35;34	n	0.00	0	38.5	0	35;42	n	0.02	1	50.5	1	54;47	n	0.00	0	55.0	0	46;64	n	ENSMUSG00000074247.11	Dda1	chr8	protein_coding	DET1 and DDB1 associated 1
known_NIR_18994	chr8	71933886	71934777	-	71933886;71934670	71934596;71934777	ES	ENSMUST00000093450.6	known	0.00	0	3.0	0	5;1	n	0.14	1	6.0	1	3;9	n	0.00	0	9.5	0	7;12	n	0.00	0	9.0	0	7;11	n	0.00	0	9.5	0	10;9	n	0.00	0	1.0	0	0;2	n	0.00	0	12.5	0	10;15	n	0.00	0	3.5	0	4;3	n	0.00	0	9.0	0	9;9	n	0.08	1	12.0	1	8;16	n	0.00	0	2.5	0	3;2	n	0.24	3	9.5	3	7;12	y	ENSMUSG00000034863.10	Ano8	chr8	protein_coding	anoctamin 8
known_NIR_18995	chr8	71943181	71943299	+	71943181	71943539	A3SS	ENSMUST00000007754.13	known	0.00	0	27	0	27	n	0.12	2	15	2	15	y	0.07	2	27	2	27	y	0.16	4	21	4	21	y	0.09	2	20	2	20	y	0.29	4	10	4	10	y	0.00	0	21	0	21	n	0.11	2	16	2	16	y	0.13	4	26	4	26	y	0.06	2	31	2	31	y	0.00	0	15	0	15	n	0.08	1	12	1	12	n	ENSMUSG00000007610.16	Gtpbp3	chr8	protein_coding	GTP binding protein 3
known_NIR_18996	chr8	71943181	71943710	+	71943181;71943611	71943539;71943710	ES	ENSMUST00000007754.13	known	0.35	11	20.0	11	27;13	y	0.31	5	11.0	5	15;7	y	0.14	4	24.0	4	27;21	y	0.35	11	20.0	11	21;19	y	0.38	12	20.0	12	20;20	y	0.43	6	8.0	6	10;6	y	0.28	8	20.5	8	21;20	y	0.36	8	14.5	8	16;13	y	0.13	3	20.0	3	26;14	y	0.31	13	28.5	13	31;26	y	0.31	8	18.0	8	15;21	y	0.41	10	14.5	10	12;17	y	ENSMUSG00000007610.16	Gtpbp3	chr8	protein_coding	GTP binding protein 3
known_NIR_18997	chr8	71943181;71943611	71943299;71943710	+	71943181	71943710	cassetteExon	ENSMUST00000095259.10	known	0.37	6.5	11	0;13	11	n	0.47	4.5	5	2;7	5	y	0.74	11.5	4	2;21	4	y	0.51	11.5	11	4;19	11	y	0.48	11.0	12	2;20	12	y	0.45	5.0	6	4;6	6	y	0.56	10.0	8	0;20	8	n	0.48	7.5	8	2;13	8	y	0.75	9.0	3	4;14	3	y	0.52	14.0	13	2;26	13	y	0.57	10.5	8	0;21	8	n	0.47	9.0	10	1;17	10	n	ENSMUSG00000007610.16	Gtpbp3	chr8	protein_coding	GTP binding protein 3
known_NIR_18998	chr8	71995875	71997868	+	71995875	71996031	3pMXE	ENSMUST00000212234.2	known	0.06	10	157	10	157	y	0.07	13	167	13	167	y	0.05	9	187	9	187	y	0.13	21	142	21	142	y	0.06	13	221	13	221	y	0.05	6	118	6	118	y	0.05	12	221	12	221	y	0.07	9	119	9	119	y	0.03	4	144	4	144	y	0.05	13	236	13	236	y	0.06	14	235	14	235	y	0.05	12	210	12	210	y	ENSMUSG00000031813.9	Mvb12a	chr8	protein_coding	multivesicular body subunit 12A
known_NIR_18999	chr8	71995875;71996127	71996031;71997868	+	71995875	71997868	cassetteExon	ENSMUST00000212954.2	known	0.95	176.0	10	157;195	10	y	0.93	177.5	13	167;188	13	y	0.96	211.5	9	187;236	9	y	0.89	176.5	21	142;211	21	y	0.95	245.0	13	221;269	13	y	0.95	126.5	6	118;135	6	y	0.95	242.0	12	221;263	12	y	0.93	124.5	9	119;130	9	y	0.98	167.5	4	144;191	4	y	0.95	254.5	13	236;273	13	y	0.94	236.5	14	235;238	14	y	0.95	253.0	12	210;296	12	y	ENSMUSG00000031813.9	Mvb12a	chr8	protein_coding	multivesicular body subunit 12A
known_NIR_19000	chr8	71996127;71996767	71996601;71997868	+	71996127	71997868	cassetteExon	ENSMUST00000034272.9	known	0.10	20.5	195	25;16	195	y	0.09	18.0	188	19;17	188	y	0.09	22.0	236	24;20	236	y	0.12	28.5	211	24;33	211	y	0.08	24.0	269	21;27	269	y	0.11	17.0	135	16;18	135	y	0.09	27.0	263	26;28	263	y	0.07	10.0	130	10;10	130	y	0.08	16.5	191	12;21	191	y	0.12	39.0	273	31;47	273	y	0.10	25.5	238	27;24	238	y	0.07	21.5	296	20;23	296	y	ENSMUSG00000031813.9	Mvb12a	chr8	protein_coding	multivesicular body subunit 12A
known_NIR_19001	chr8	71996767	71997868	+	71995875	71997868	A5SS	ENSMUST00000212954.2	known	0.62	16	10	16	10	y	0.57	17	13	17	13	y	0.69	20	9	20	9	y	0.61	33	21	33	21	y	0.68	27	13	27	13	y	0.75	18	6	18	6	y	0.70	28	12	28	12	y	0.53	10	9	10	9	y	0.84	21	4	21	4	y	0.78	47	13	47	13	y	0.63	24	14	24	14	y	0.66	23	12	23	12	y	ENSMUSG00000031813.9	Mvb12a	chr8	protein_coding	multivesicular body subunit 12A
known_NIR_19002	chr8	72022485	72023365	+	72022956	72023365	A5SS&ES	ENSMUST00000212989.2	known	1.00	3	0	3	0	n	1.00	3	0	3	0	n	1.00	3	0	3	0	n	0.75	3	1	3	1	n	1.00	3	0	3	0	n	1.00	2	0	2	0	n	1.00	1	0	1	0	n	1.00	5	0	5	0	n	0.67	2	1	2	1	n	0.70	7	3	7	3	y	1.00	6	0	6	0	n	1.00	1	0	1	0	n	ENSMUSG00000031808.8	Slc27a1	chr8	protein_coding	solute carrier family 27 (fatty acid transporter), member 1
known_NIR_19003	chr8	72045432	72046728	+	72045148	72046728	A5SS	ENSMUST00000034264.11	known	0.00	0	242	0	242	n	0.02	6	254	6	254	y	0.02	5	236	5	236	y	0.00	1	214	1	214	n	0.02	6	308	6	308	y	0.01	1	191	1	191	n	0.03	9	332	9	332	y	0.00	0	162	0	162	n	0.01	2	204	2	204	y	0.02	8	334	8	334	y	0.01	2	301	2	301	y	0.01	2	269	2	269	y	ENSMUSG00000031807.11	Pgls	chr8	protein_coding	6-phosphogluconolactonase
known_NIR_19004	chr8	72047414	72047650	+	72047414	72047705	A3SS	ENSMUST00000034264.11	known	0.01	2	374	2	374	y	0.01	4	458	4	458	y	0.00	0	368	0	368	n	0.00	0	310	0	310	n	0.01	3	434	3	434	y	0.01	3	268	3	268	y	0.01	4	450	4	450	y	0.00	1	259	1	259	n	0.00	1	329	1	329	n	0.00	2	518	2	518	y	0.00	0	469	0	469	n	0.00	2	401	2	401	y	ENSMUSG00000031807.11	Pgls	chr8	protein_coding	6-phosphogluconolactonase
known_NIR_19005	chr8	72047845	72051722	+	72047845	72048701	3pMXE	ENSMUST00000034264.11	known	0.00	1	261	1	261	n	0.00	0	314	0	314	n	0.00	0	248	0	248	n	0.01	2	222	2	222	y	0.00	0	335	0	335	n	0.00	0	182	0	182	n	0.00	0	322	0	322	n	0.00	0	186	0	186	n	0.00	0	228	0	228	n	0.01	2	371	2	371	y	0.00	1	335	1	335	n	0.01	2	292	2	292	y	ENSMUSG00000031807.11	Pgls	chr8	protein_coding	6-phosphogluconolactonase
known_NIR_19006	chr8	72075474	72075682	+	72075474	72075734	A3SS	ENSMUST00000047903.10	known	0.01	2	161	2	161	y	0.00	0	140	0	140	n	0.01	2	276	2	276	y	0.00	0	134	0	134	n	0.00	1	301	1	301	n	0.00	0	201	0	201	n	0.01	2	235	2	235	y	0.00	0	159	0	159	n	0.00	0	113	0	113	n	0.00	0	178	0	178	n	0.00	0	129	0	129	n	0.01	1	157	1	157	n	ENSMUSG00000034807.10	Colgalt1	chr8	protein_coding	collagen beta(1-O)galactosyltransferase 1
known_NIR_19007	chr8	72676816	72682046	+	72662582	72682046	A5SS	ENSMUST00000131544.8	known	1.00	18	0	18	0	n	1.00	18	0	18	0	n	1.00	36	0	36	0	n	0.93	27	2	27	2	y	1.00	16	0	16	0	n	1.00	9	0	9	0	n	1.00	44	0	44	0	n	1.00	15	0	15	0	n	1.00	14	0	14	0	n	1.00	29	0	29	0	n	1.00	21	0	21	0	n	1.00	25	0	25	0	n	ENSMUSG00000066880.16	Zfp617	chr8	protein_coding	zinc finger protein 617
known_NIR_19008	chr8	72705004	72719944	+	72705004;72719760	72719638;72719944	ES	ENSMUST00000138304.8	known	0.00	0	5.5	0	11;0	n	0.12	1	7.5	1	15;0	n	0.21	2	7.5	2	10;5	y	0.00	0	8.5	0	12;5	n	0.00	0	7.0	0	10;4	n	0.00	0	4.0	0	5;3	n	0.00	0	5.5	0	5;6	n	0.00	0	4.5	0	6;3	n	0.00	0	2.0	0	4;0	n	0.00	0	13.5	0	23;4	n	0.32	3	6.5	3	10;3	y	0.00	0	7.0	0	12;2	n	ENSMUSG00000052446.18	Zfp961	chr8	protein_coding	zinc finger protein 961
known_NIR_19009	chr8	72705004	72719944	+	72705004;72719764	72719638;72719944	ES	ENSMUST00000109997.10	known	0.00	0	8.5	0	11;6	n	0.08	1	11.5	1	15;8	n	0.21	2	7.5	2	10;5	y	0.00	0	11.0	0	12;10	n	0.00	0	9.5	0	10;9	n	0.00	0	3.0	0	5;1	n	0.00	0	3.5	0	5;2	n	0.00	0	4.5	0	6;3	n	0.00	0	5.5	0	4;7	n	0.00	0	13.5	0	23;4	n	0.38	3	5.0	3	10;0	n	0.00	0	8.5	0	12;5	n	ENSMUSG00000052446.18	Zfp961	chr8	protein_coding	zinc finger protein 961
known_NIR_19010	chr8	72705004	72721743	+	72705004;72719764	72719638;72721743	ES	ENSMUST00000136516.9	known	0.00	0	9.0	0	11;7	n	0.00	0	9.5	0	15;4	n	0.00	0	8.0	0	10;6	n	0.00	0	9.0	0	12;6	n	0.00	0	9.0	0	10;8	n	0.00	0	4.0	0	5;3	n	0.00	0	7.0	0	5;9	n	0.00	0	4.5	0	6;3	n	0.00	0	4.0	0	4;4	n	0.11	2	16.0	2	23;9	y	0.00	0	9.0	0	10;8	n	0.00	0	9.5	0	12;7	n	ENSMUSG00000052446.18	Zfp961	chr8	protein_coding	zinc finger protein 961
known_NIR_19011	chr8	72705004;72720004	72719638;72721743	+	72705004	72721743	cassetteExon	ENSMUST00000144807.2	known	1.00	7.5	0	11;4	0	n	1.00	10.0	0	15;5	0	n	1.00	10.5	0	10;11	0	n	1.00	10.0	0	12;8	0	n	1.00	10.0	0	10;10	0	n	1.00	3.5	0	5;2	0	n	1.00	6.5	0	5;8	0	n	1.00	7.0	0	6;8	0	n	1.00	5.0	0	4;6	0	n	0.88	15.0	2	23;7	2	y	1.00	7.5	0	10;5	0	n	1.00	7.0	0	12;2	0	n	ENSMUSG00000052446.18	Zfp961	chr8	protein_coding	zinc finger protein 961
known_NIR_19012	chr8	72705004;72720004	72719944;72721743	+	72705004;72719764	72719638;72721743	MXE	ENSMUST00000136516.9	known	0.18	2.0	9.0	0;4	11;7	n	0.24	3.0	9.5	1;5	15;4	n	0.45	6.5	8.0	2;11	10;6	y	0.31	4.0	9.0	0;8	12;6	n	0.36	5.0	9.0	0;10	10;8	n	0.20	1.0	4.0	0;2	5;3	n	0.36	4.0	7.0	0;8	5;9	n	0.47	4.0	4.5	0;8	6;3	n	0.43	3.0	4.0	0;6	4;4	n	0.18	3.5	16.0	0;7	23;9	n	0.31	4.0	9.0	3;5	10;8	y	0.10	1.0	9.5	0;2	12;7	n	ENSMUSG00000052446.18	Zfp961	chr8	protein_coding	zinc finger protein 961
known_NIR_19013	chr8	72719760	72719944	+	72719764	72719944	A5SS	ENSMUST00000131237.8	known	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.50	5	5	5	5	y	0.33	5	10	5	10	y	0.31	4	9	4	9	y	0.75	3	1	3	1	n	0.75	6	2	6	2	n	0.50	3	3	3	3	n	0.00	0	7	0	7	n	0.50	4	4	4	4	n	1.00	3	0	3	0	n	0.29	2	5	2	5	n	ENSMUSG00000052446.18	Zfp961	chr8	protein_coding	zinc finger protein 961
known_NIR_19014	chr8	72719764	72721743	+	72719764;72720004	72719944;72721743	ES	ENSMUST00000131237.8	known	0.58	7	5.0	7	6;4	y	0.38	4	6.5	4	8;5	y	0.43	6	8.0	6	5;11	y	0.40	6	9.0	6	10;8	y	0.46	8	9.5	8	9;10	y	0.67	3	1.5	3	1;2	n	0.64	9	5.0	9	2;8	y	0.35	3	5.5	3	3;8	y	0.38	4	6.5	4	7;6	y	0.62	9	5.5	9	4;7	y	0.76	8	2.5	8	0;5	n	0.67	7	3.5	7	5;2	y	ENSMUSG00000052446.18	Zfp961	chr8	protein_coding	zinc finger protein 961
known_NIR_19015	chr8	72719764	72721743	+	72720004	72721743	A5SS&ES	ENSMUST00000138304.8	known	0.64	7	4	7	4	y	0.44	4	5	4	5	n	0.35	6	11	6	11	y	0.43	6	8	6	8	y	0.44	8	10	8	10	y	0.60	3	2	3	2	n	0.53	9	8	9	8	y	0.27	3	8	3	8	y	0.40	4	6	4	6	y	0.56	9	7	9	7	y	0.62	8	5	8	5	y	0.78	7	2	7	2	n	ENSMUSG00000052446.18	Zfp961	chr8	protein_coding	zinc finger protein 961
known_NIR_19016	chr8	72889297	72892432	+	72888893	72892432	A5SS	ENSMUST00000123177.3	known	1.00	20	0	20	0	n	0.90	19	2	19	2	y	1.00	58	0	58	0	n	1.00	19	0	19	0	n	1.00	43	0	43	0	n	1.00	20	0	20	0	n	1.00	45	0	45	0	n	0.90	18	2	18	2	y	1.00	14	0	14	0	n	1.00	21	0	21	0	n	1.00	21	0	21	0	n	1.00	28	0	28	0	n	ENSMUSG00000031799.11	Tpm4	chr8	protein_coding	tropomyosin 4
known_NIR_19017	chr8	72889764	72892432	+	72889297	72892432	A5SS	ENSMUST00000003575.11	known	0.00	0	20	0	20	n	0.10	2	19	2	19	y	0.00	0	58	0	58	n	0.00	0	19	0	19	n	0.00	0	43	0	43	n	0.09	2	20	2	20	y	0.00	0	45	0	45	n	0.00	0	18	0	18	n	0.00	0	14	0	14	n	0.00	0	21	0	21	n	0.00	0	21	0	21	n	0.00	0	28	0	28	n	ENSMUSG00000031799.11	Tpm4	chr8	protein_coding	tropomyosin 4
known_NIR_19018	chr8	72915256	72922271	+	72915326	72922271	A5SS	ENSMUST00000003121.9	known	0.00	1	201	1	201	n	0.00	0	180	0	180	n	0.00	0	206	0	206	n	0.00	0	229	0	229	n	0.00	0	244	0	244	n	0.00	0	111	0	111	n	0.00	0	222	0	222	n	0.00	0	162	0	162	n	0.00	0	145	0	145	n	0.01	2	236	2	236	y	0.00	0	196	0	196	n	0.00	1	228	1	228	n	ENSMUSG00000003037.17	Rab8a	chr8	protein_coding	RAB8A, member RAS oncogene family
known_NIR_19019	chr8	72994087;72995782	72995568;73000483	+	72994087	73000483	cassetteExon	ENSMUST00000003117.15	known	0.00	0.0	50	0;0	50	n	0.05	2.5	50	1;4	50	n	0.04	3.0	72	3;3	72	y	0.01	1.0	70	1;1	70	n	0.04	3.0	65	2;4	65	y	0.00	0.0	36	0;0	36	n	0.06	3.0	47	4;2	47	y	0.02	0.5	25	1;0	25	n	0.00	0.0	38	0;0	38	n	0.03	2.0	56	4;0	56	n	0.01	0.5	42	1;0	42	n	0.00	0.0	57	0;0	57	n	ENSMUSG00000003033.16	Ap1m1	chr8	protein_coding	adaptor-related protein complex AP-1, mu subunit 1
known_NIR_19020	chr8	73095368	73121748	-	73100015	73121748	3pMXE	ENSMUST00000212257.2	known	0.44	4	5	4	5	n	0.67	8	4	8	4	y	0.67	4	2	4	2	n	0.75	6	2	6	2	n	0.50	6	6	6	6	y	0.60	3	2	3	2	n	0.56	5	4	5	4	n	0.71	5	2	5	2	n	0.45	5	6	5	6	y	0.43	3	4	3	4	n	0.80	12	3	12	3	y	0.71	10	4	10	4	y	ENSMUSG00000006276.11	Eps15l1	chr8	protein_coding	epidermal growth factor receptor pathway substrate 15-like 1
known_NIR_19021	chr8	73095368;73100015	73099810;73121748	-	73095368	73121748	cassetteExon	ENSMUST00000212121.2	known	0.74	11.5	4	18;5	4	y	0.38	5.0	8	6;4	8	y	0.71	10.0	4	18;2	4	y	0.65	11.0	6	20;2	6	y	0.66	11.5	6	17;6	6	y	0.57	4.0	3	6;2	3	y	0.78	18.0	5	32;4	5	y	0.64	9.0	5	16;2	5	y	0.71	12.0	5	18;6	5	y	0.78	10.5	3	17;4	3	y	0.51	12.5	12	22;3	12	y	0.59	14.5	10	25;4	10	y	ENSMUSG00000006276.11	Eps15l1	chr8	protein_coding	epidermal growth factor receptor pathway substrate 15-like 1
known_NIR_19022	chr8	73100015	73121748	-	73100015;73112289	73112157;73121748	ES	ENSMUST00000163643.3	known	0.29	5	12.5	5	15;10	y	0.28	4	10.5	4	7;14	y	0.11	2	16.0	2	12;20	y	0.25	2	6.0	2	4;8	y	0.24	6	18.5	6	16;21	y	0.24	2	6.5	2	6;7	y	0.33	4	8.0	4	8;8	y	0.21	2	7.5	2	12;3	y	0.35	6	11.0	6	9;13	y	0.25	4	12.0	4	11;13	y	0.29	3	7.5	3	6;9	y	0.22	4	14.0	4	16;12	y	ENSMUSG00000006276.11	Eps15l1	chr8	protein_coding	epidermal growth factor receptor pathway substrate 15-like 1
known_NIR_19023	chr8	73100015	73121748	-	73112289	73121748	3pMXE	ENSMUST00000212950.2	known	0.33	5	10	5	10	y	0.22	4	14	4	14	y	0.09	2	20	2	20	y	0.20	2	8	2	8	y	0.22	6	21	6	21	y	0.22	2	7	2	7	n	0.33	4	8	4	8	y	0.40	2	3	2	3	n	0.32	6	13	6	13	y	0.24	4	13	4	13	y	0.25	3	9	3	9	y	0.25	4	12	4	12	y	ENSMUSG00000006276.11	Eps15l1	chr8	protein_coding	epidermal growth factor receptor pathway substrate 15-like 1
known_NIR_19024	chr8	73112289	73121748	-	73095368	73121748	A3SS	ENSMUST00000212121.2	known	0.71	10	4	10	4	y	0.64	14	8	14	8	y	0.83	20	4	20	4	y	0.57	8	6	8	6	y	0.78	21	6	21	6	y	0.70	7	3	7	3	y	0.62	8	5	8	5	y	0.38	3	5	3	5	n	0.72	13	5	13	5	y	0.81	13	3	13	3	y	0.43	9	12	9	12	y	0.55	12	10	12	10	y	ENSMUSG00000006276.11	Eps15l1	chr8	protein_coding	epidermal growth factor receptor pathway substrate 15-like 1
known_NIR_19025	chr8	73127790	73132928	-	73127790	73132835	A5SS	ENSMUST00000163643.3	known	0.50	2	2	2	2	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.38	5	8	5	8	y	0.25	1	3	1	3	n	0.00	0	17	0	17	n	0.18	2	9	2	9	y	0.08	1	11	1	11	n	0.22	2	7	2	7	n	0.12	2	15	2	15	y	0.23	3	10	3	10	y	ENSMUSG00000006276.11	Eps15l1	chr8	protein_coding	epidermal growth factor receptor pathway substrate 15-like 1
known_NIR_19026	chr8	73222330	73223708	-	73222363	73223708	A3SS	ENSMUST00000079510.6	known	0.68	15	7	15	7	y	0.70	19	8	19	8	y	0.78	32	9	32	9	y	0.83	19	4	19	4	y	0.85	33	6	33	6	y	0.93	14	1	14	1	n	0.77	17	5	17	5	y	0.88	23	3	23	3	y	0.88	21	3	21	3	y	0.88	36	5	36	5	y	0.68	15	7	15	7	y	0.94	31	2	31	2	y	ENSMUSG00000052488.8	Cherp	chr8	protein_coding	calcium homeostasis endoplasmic reticulum protein
known_NIR_19027	chr8	73228624	73228902	-	73228629	73228902	A3SS	ENSMUST00000079510.6	known	0.00	0	33	0	33	n	0.00	0	17	0	17	n	0.00	0	40	0	40	n	0.07	3	42	3	42	y	0.00	0	41	0	41	n	0.00	0	19	0	19	n	0.00	0	38	0	38	n	0.00	0	31	0	31	n	0.00	0	13	0	13	n	0.00	0	34	0	34	n	0.00	0	17	0	17	n	0.00	0	33	0	33	n	ENSMUSG00000052488.8	Cherp	chr8	protein_coding	calcium homeostasis endoplasmic reticulum protein
known_NIR_19028	chr8	73333563	73335029	+	73333563	73333804	A3SS&ES	ENSMUST00000212763.2	known	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.09	1	10	1	10	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.01	1	97	1	97	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.10	1	9	1	9	n	0.33	2	4	2	4	n	0.25	3	9	3	9	y	ENSMUSG00000031791.9	Tmem38a	chr8	protein_coding	transmembrane protein 38A
known_NIR_19029	chr8	73333563	73335029	+	73333563;73333988	73333804;73335029	ES	ENSMUST00000034244.9	known	0.00	0	3.0	0	0;6	n	0.00	0	2.5	0	2;3	n	0.00	0	8.0	0	6;10	n	0.10	1	9.0	1	10;8	n	0.00	0	5.0	0	4;6	n	0.00	0	4.0	0	5;3	n	0.01	1	93.5	1	97;90	n	0.00	0	8.0	0	7;9	n	0.00	0	5.5	0	6;5	n	0.10	1	9.0	1	9;9	n	0.36	2	3.5	2	4;3	n	0.33	3	6.0	3	9;3	y	ENSMUSG00000031791.9	Tmem38a	chr8	protein_coding	transmembrane protein 38A
known_NIR_19030	chr8	73466116	73468102	+	73466116	73466358	3pMXE	ENSMUST00000109950.5	known	0.02	3	127	3	127	y	0.01	2	141	2	141	y	0.03	5	172	5	172	y	0.03	3	111	3	111	y	0.04	6	150	6	150	y	0.02	2	102	2	102	y	0.07	12	159	12	159	y	0.06	4	65	4	65	y	0.07	8	115	8	115	y	0.01	2	173	2	173	y	0.01	1	165	1	165	n	0.05	7	147	7	147	y	ENSMUSG00000031622.17	Sin3b	chr8	protein_coding	transcriptional regulator, SIN3B (yeast)
known_NIR_19031	chr8	75720377	75726188	+	75720377;75725566	75725463;75726188	ES	ENSMUST00000041759.14	known	0.00	0	2.5	0	1;4	n	0.29	1	2.5	1	2;3	n	0.22	1	3.5	1	2;5	n	0.40	1	1.5	1	0;3	n	0.25	1	3.0	1	3;3	n	0.00	0	3.5	0	1;6	n	0.14	1	6.0	1	6;6	n	0.86	3	0.5	3	0;1	n	-	-	-	-	-	-	0.40	2	3.0	2	2;4	n	0.29	1	2.5	1	5;0	n	0.33	2	4.0	2	3;5	y	ENSMUSG00000034518.15	Hmgxb4	chr8	protein_coding	HMG box domain containing 4
known_NIR_19032	chr8	75726519;75726741	75726627;75727278	+	75726519	75727278	cassetteExon	ENSMUST00000041759.14	known	0.83	10.0	2	10;10	2	y	0.69	4.5	2	5;4	2	y	0.86	6.0	1	5;7	1	n	1.00	6.0	0	2;10	0	n	0.68	6.5	3	7;6	3	y	0.50	4.0	4	6;2	4	y	0.80	8.0	2	11;5	2	y	0.88	7.5	1	6;9	1	n	0.62	5.0	3	5;5	3	y	0.81	12.5	3	12;13	3	y	0.69	4.5	2	2;7	2	y	0.86	6.0	1	7;5	1	n	ENSMUSG00000034518.15	Hmgxb4	chr8	protein_coding	HMG box domain containing 4
known_NIR_19033	chr8	75760455	75774621	+	75760455	75778551	A3SS	ENSMUST00000212651.2	known	0.97	64	2	64	2	y	0.98	42	1	42	1	n	1.00	79	0	79	0	n	1.00	53	0	53	0	n	1.00	77	0	77	0	n	1.00	44	0	44	0	n	1.00	69	0	69	0	n	0.97	31	1	31	1	n	1.00	66	0	66	0	n	0.99	108	1	108	1	n	1.00	68	0	68	0	n	1.00	58	0	58	0	n	ENSMUSG00000042870.16	Tom1	chr8	protein_coding	target of myb1 trafficking protein
known_NIR_19034	chr8	75760455	75774621	+	75760455	75781205	A3SS	ENSMUST00000212388.2	known	1.00	64	0	64	0	n	0.98	42	1	42	1	n	0.98	79	2	79	2	y	1.00	53	0	53	0	n	1.00	77	0	77	0	n	1.00	44	0	44	0	n	0.99	69	1	69	1	n	1.00	31	0	31	0	n	0.99	66	1	66	1	n	1.00	108	0	108	0	n	0.99	68	1	68	1	n	1.00	58	0	58	0	n	ENSMUSG00000042870.16	Tom1	chr8	protein_coding	target of myb1 trafficking protein
known_NIR_19035	chr8	75776896	75778136	+	75760455	75778136	A5SS	ENSMUST00000211869.2	known	1.00	35	0	35	0	n	1.00	27	0	27	0	n	0.98	61	1	61	1	n	0.98	49	1	49	1	n	1.00	65	0	65	0	n	1.00	24	0	24	0	n	0.94	60	4	60	4	y	1.00	18	0	18	0	n	1.00	31	0	31	0	n	1.00	61	0	61	0	n	1.00	43	0	43	0	n	1.00	47	0	47	0	n	ENSMUSG00000042870.16	Tom1	chr8	protein_coding	target of myb1 trafficking protein
known_NIR_19036	chr8	75785534;75785888	75785817;75787061	+	75785534	75787061	cassetteExon	ENSMUST00000165630.3	known	0.00	0.0	84	0;0	84	n	0.00	0.0	76	0;0	76	n	0.01	1.0	122	2;0	122	n	0.00	0.0	77	0;0	77	n	0.03	2.0	72	2;2	72	y	0.00	0.0	51	0;0	51	n	0.00	0.0	92	0;0	92	n	0.00	0.0	49	0;0	49	n	0.01	0.5	71	1;0	71	n	0.00	0.0	98	0;0	98	n	0.00	0.0	77	0;0	77	n	0.00	0.0	77	0;0	77	n	ENSMUSG00000042870.16	Tom1	chr8	protein_coding	target of myb1 trafficking protein
known_NIR_19037	chr8	77629168;77633252	77633222;77634899	+	77629168	77634899	cassetteExon	ENSMUST00000148106.8	known	0.25	1.0	3	0;2	3	n	1.00	1.5	0	0;3	0	n	0.33	0.5	1	1;0	1	n	0.00	0.0	5	0;0	5	n	0.38	5.0	8	4;6	8	y	-	-	-	-	-	-	0.00	0.0	3	0;0	3	n	0.64	3.5	2	3;4	2	n	0.43	1.5	2	1;2	2	n	0.60	3.0	2	3;3	2	n	0.20	1.5	6	1;2	6	n	0.38	2.5	4	4;1	4	n	ENSMUSG00000031618.14	Nr3c2	chr8	protein_coding	nuclear receptor subfamily 3, group C, member 2
known_NIR_19038	chr8	78287603	78289078	+	78287603	78289043	A3SS	ENSMUST00000056237.15	known	0.00	0	22	0	22	n	0.00	0	14	0	14	n	0.04	1	27	1	27	n	0.03	1	32	1	32	n	0.03	1	28	1	28	n	0.17	3	15	3	15	y	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.06	1	15	1	15	n	0.00	0	23	0	23	n	0.07	1	13	1	13	n	0.00	0	19	0	19	n	ENSMUSG00000037134.18	Prmt9	chr8	protein_coding	protein arginine methyltransferase 9
known_NIR_19039	chr8	79233446	79235428	-	79233492	79235428	A3SS	ENSMUST00000049245.10	known	0.46	11	13	11	13	y	0.50	14	14	14	14	y	0.36	8	14	8	14	y	0.60	31	21	31	21	y	0.41	18	26	18	26	y	0.30	7	16	7	16	y	0.50	14	14	14	14	y	0.20	6	24	6	24	y	0.63	12	7	12	7	y	0.49	18	19	18	19	y	0.46	12	14	12	14	y	0.42	14	19	14	19	y	ENSMUSG00000037070.11	Rbmxl1	chr8	protein_coding	RNA binding motif protein, X-linked like-1
known_NIR_19040	chr8	79425200	79456247	+	79425200;79433577	79433504;79456247	ES	ENSMUST00000034111.10	known	0.06	1	15.0	1	11;19	n	0.00	0	7.5	0	6;9	n	0.07	2	25.5	2	22;29	y	0.00	0	23.5	0	21;26	n	0.07	2	26.5	2	26;27	y	0.04	1	21.5	1	16;27	n	0.06	1	17.0	1	13;21	n	0.00	0	14.5	0	14;15	n	0.00	0	8.5	0	9;8	n	0.00	0	14.0	0	10;18	n	0.07	1	12.5	1	10;15	n	0.06	1	17.0	1	12;22	n	ENSMUSG00000031684.12	Slc10a7	chr8	protein_coding	solute carrier family 10 (sodium/bile acid cotransporter family), member 7
known_NIR_19041	chr8	79433577	79456247	+	79423960	79456247	A5SS	ENSMUST00000209490.2	known	1.00	19	0	19	0	n	1.00	9	0	9	0	n	1.00	29	0	29	0	n	1.00	26	0	26	0	n	1.00	27	0	27	0	n	1.00	27	0	27	0	n	0.91	21	2	21	2	y	1.00	15	0	15	0	n	0.89	8	1	8	1	n	1.00	18	0	18	0	n	1.00	15	0	15	0	n	1.00	22	0	22	0	n	ENSMUSG00000031684.12	Slc10a7	chr8	protein_coding	solute carrier family 10 (sodium/bile acid cotransporter family), member 7
known_NIR_19042	chr8	79539709	79547677	-	79539709;79546714	79546616;79547677	ES	ENSMUST00000130325.8	known	0.33	25	51.5	25	68;35	y	0.26	23	66.0	23	91;41	y	0.46	36	41.5	36	54;29	y	0.22	18	62.5	18	87;38	y	0.39	37	57.5	37	89;26	y	0.23	7	23.5	7	26;21	y	0.21	19	69.5	19	89;50	y	0.40	20	30.0	20	46;14	y	0.29	15	36.0	15	49;23	y	0.29	24	59.5	24	82;37	y	0.25	27	79.5	27	99;60	y	0.29	25	61.0	25	82;40	y	ENSMUSG00000031683.17	Lsm6	chr8	protein_coding	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated
known_NIR_19043	chr8	80004953	80007810	-	80004953	80007806	A5SS	ENSMUST00000048718.4	known	0.09	5	48	5	48	y	0.16	9	48	9	48	y	0.05	1	20	1	20	n	0.15	9	52	9	52	y	0.21	11	42	11	42	y	0.22	5	18	5	18	y	0.18	13	60	13	60	y	0.14	4	24	4	24	y	0.22	11	38	11	38	y	0.22	22	76	22	76	y	0.17	10	50	10	50	y	0.11	6	49	6	49	y	ENSMUSG00000037022.4	Mmaa	chr8	protein_coding	methylmalonic aciduria (cobalamin deficiency) type A
known_NIR_19044	chr8	80008283	80010838	-	80008283	80021543	A5SS	ENSMUST00000048718.4	known	0.77	27	8	27	8	y	0.78	21	6	21	6	y	0.65	17	9	17	9	y	0.74	37	13	37	13	y	0.73	33	12	33	12	y	0.70	7	3	7	3	y	0.79	23	6	23	6	y	0.78	14	4	14	4	y	0.89	17	2	17	2	y	0.76	37	12	37	12	y	0.84	36	7	36	7	y	0.90	45	5	45	5	y	ENSMUSG00000037022.4	Mmaa	chr8	protein_coding	methylmalonic aciduria (cobalamin deficiency) type A
known_NIR_19045	chr8	80386091	80387670	+	80386091	80387667	A3SS	ENSMUST00000173078.8	known	0.36	4	7	4	7	y	0.25	1	3	1	3	n	0.14	4	24	4	24	y	0.57	13	10	13	10	y	0.46	12	14	12	14	y	0.39	7	11	7	11	y	0.33	6	12	6	12	y	0.42	5	7	5	7	y	0.38	5	8	5	8	y	0.31	5	11	5	11	y	0.58	7	5	7	5	y	0.48	14	15	14	15	y	ENSMUSG00000036990.14	Otud4	chr8	protein_coding	OTU domain containing 4
known_NIR_19046	chr8	83061235	83069868	-	83061235;83064239	83064195;83069868	ES	ENSMUST00000209363.2	known	0.00	0	2.0	0	3;1	n	0.00	0	4.5	0	4;5	n	0.00	0	2.5	0	2;3	n	0.00	0	2.5	0	2;3	n	0.00	0	5.0	0	5;5	n	0.00	0	0.5	0	1;0	n	0.19	2	8.5	2	7;10	y	-	-	-	-	-	-	0.00	0	8.5	0	5;12	n	0.00	0	2.5	0	2;3	n	0.00	0	3.0	0	3;3	n	0.00	0	4.5	0	4;5	n	ENSMUSG00000031712.11	Il15	chr8	protein_coding	interleukin 15
known_NIR_19047	chr8	83061235	83069868	-	83064239	83069868	A3SS&ES	ENSMUST00000211565.2	known	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.17	2	10	2	10	y	-	-	-	-	-	-	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000031712.11	Il15	chr8	protein_coding	interleukin 15
known_NIR_19048	chr8	84057887	84058979	-	84057887	84058984	A5SS	ENSMUST00000177594.8	known	1.00	14	0	14	0	n	1.00	9	0	9	0	n	1.00	37	0	37	0	n	0.82	9	2	9	2	y	1.00	26	0	26	0	n	1.00	18	0	18	0	n	1.00	18	0	18	0	n	1.00	24	0	24	0	n	1.00	6	0	6	0	n	1.00	24	0	24	0	n	1.00	13	0	13	0	n	1.00	20	0	20	0	n	ENSMUSG00000035151.13	Elmod2	chr8	protein_coding	ELMO/CED-12 domain containing 2
known_NIR_19049	chr8	84164262	84164614	-	84164265	84164614	A3SS	ENSMUST00000212449.2	known	0.10	4	36	4	36	y	0.10	3	26	3	26	y	0.13	7	45	7	45	y	0.07	4	54	4	54	y	0.02	1	44	1	44	n	0.15	4	22	4	22	y	0.03	1	28	1	28	n	0.06	2	32	2	32	y	0.17	5	25	5	25	y	0.11	5	40	5	40	y	0.09	3	32	3	32	y	0.12	5	38	5	38	y	ENSMUSG00000063253.12	Scoc	chr8	protein_coding	short coiled-coil protein
known_NIR_19050	chr8	84164685	84165759	-	84164685	84169051	A5SS	ENSMUST00000212473.2	known	0.00	0	28	0	28	n	0.08	2	22	2	22	y	0.00	0	32	0	32	n	0.00	0	39	0	39	n	0.03	1	29	1	29	n	0.00	0	12	0	12	n	0.12	4	30	4	30	y	0.00	0	19	0	19	n	0.11	2	16	2	16	y	0.00	0	33	0	33	n	0.00	0	19	0	19	n	0.06	2	34	2	34	y	ENSMUSG00000063253.12	Scoc	chr8	protein_coding	short coiled-coil protein
known_NIR_19051	chr8	84299952	84300500	-	84299952	84300040	A5SS&ES	ENSMUST00000163837.2	known	0.04	25	681	25	681	y	0.03	21	618	21	618	y	0.07	33	408	33	408	y	0.05	34	696	34	696	y	0.05	37	756	37	756	y	0.10	35	305	35	305	y	0.04	29	782	29	782	y	0.05	19	390	19	390	y	0.04	29	624	29	624	y	0.05	52	928	52	928	y	0.04	35	754	35	754	y	0.02	18	935	18	935	y	ENSMUSG00000031708.18	Tecr	chr8	protein_coding	trans-2,3-enoyl-CoA reductase
known_NIR_19052	chr8	84299952	84300500	-	84299952;84300084	84300040;84300500	ES	ENSMUST00000238997.2	known	0.04	25	592.5	25	681;504	y	0.04	21	531.5	21	618;445	y	0.09	33	352.5	33	408;297	y	0.05	34	596.5	34	696;497	y	0.05	37	681.5	37	756;607	y	0.11	35	285.0	35	305;265	y	0.04	29	680.0	29	782;578	y	0.05	19	353.0	19	390;316	y	0.05	29	551.5	29	624;479	y	0.06	52	836.0	52	928;744	y	0.05	35	662.5	35	754;571	y	0.02	18	821.5	18	935;708	y	ENSMUSG00000031708.18	Tecr	chr8	protein_coding	trans-2,3-enoyl-CoA reductase
known_NIR_19053	chr8	84300084	84300338	-	84300084	84300500	A5SS	ENSMUST00000238997.2	known	0.00	0	504	0	504	n	0.00	2	445	2	445	y	0.00	1	297	1	297	n	0.00	0	497	0	497	n	0.01	4	607	4	607	y	0.00	1	265	1	265	n	0.00	0	578	0	578	n	0.00	1	316	1	316	n	0.00	0	479	0	479	n	0.00	0	744	0	744	n	0.00	0	571	0	571	n	0.00	3	708	3	708	y	ENSMUSG00000031708.18	Tecr	chr8	protein_coding	trans-2,3-enoyl-CoA reductase
known_NIR_19054	chr8	84398070	84398536	-	84398070	84398346	5pMXE	ENSMUST00000138898.2	known	0.02	1	57	1	57	n	0.00	0	64	0	64	n	0.00	0	60	0	60	n	0.00	0	40	0	40	n	0.03	2	60	2	60	y	0.00	0	33	0	33	n	0.00	0	66	0	66	n	0.00	0	30	0	30	n	0.00	0	39	0	39	n	0.01	1	67	1	67	n	0.00	0	43	0	43	n	0.00	0	59	0	59	n	ENSMUSG00000057672.17	Pkn1	chr8	protein_coding	protein kinase N1
known_NIR_19055	chr8	84398070	84398536	-	84398070;84398422	84398346;84398536	ES	ENSMUST00000005616.16	known	0.01	1	68.5	1	57;80	n	0.00	0	57.5	0	64;51	n	0.00	0	50.5	0	60;41	n	0.00	0	52.0	0	40;64	n	0.03	2	68.0	2	60;76	y	0.00	0	34.0	0	33;35	n	0.00	0	70.5	0	66;75	n	0.00	0	35.5	0	30;41	n	0.00	0	43.5	0	39;48	n	0.01	1	68.5	1	67;70	n	0.00	0	52.5	0	43;62	n	0.00	0	63.0	0	59;67	n	ENSMUSG00000057672.17	Pkn1	chr8	protein_coding	protein kinase N1
known_NIR_19056	chr8	84419565	84420589	-	84419565	84425596	A5SS	ENSMUST00000005616.16	known	0.09	1	10	1	10	n	0.00	0	2	0	2	n	0.12	2	14	2	14	y	0.07	1	14	1	14	n	0.10	2	18	2	18	y	0.17	1	5	1	5	n	0.07	1	13	1	13	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.06	1	17	1	17	n	0.00	0	14	0	14	n	0.08	1	12	1	12	n	ENSMUSG00000057672.17	Pkn1	chr8	protein_coding	protein kinase N1
known_NIR_19057	chr8	84442475	84446016	+	84441966	84446016	A5SS	ENSMUST00000019576.15	known	0.00	0	34	0	34	n	0.04	1	25	1	25	n	0.04	2	54	2	54	y	0.00	0	39	0	39	n	0.00	0	35	0	35	n	0.07	2	25	2	25	y	0.00	0	35	0	35	n	0.00	0	19	0	19	n	0.08	2	23	2	23	y	0.00	0	22	0	22	n	0.07	2	27	2	27	y	0.00	0	20	0	20	n	ENSMUSG00000005481.19	Ddx39a	chr8	protein_coding	DEAD box helicase 39a
known_NIR_19058	chr8	84447769;84448153	84448095;84448363	+	84447769	84448363	cassetteExon	ENSMUST00000019576.15	known	0.09	4.0	40	5;3	40	y	0.17	8.0	38	8;8	38	y	0.08	5.5	63	6;5	63	y	0.17	8.0	40	10;6	40	y	0.09	6.0	60	6;6	60	y	0.19	5.0	22	7;3	22	y	0.06	2.5	40	4;1	40	n	0.05	1.0	18	0;2	18	n	0.09	3.0	29	3;3	29	y	0.07	5.0	63	4;6	63	y	0.10	4.0	38	4;4	38	y	0.05	2.5	48	2;3	48	y	ENSMUSG00000005481.19	Ddx39a	chr8	protein_coding	DEAD box helicase 39a
known_NIR_19059	chr8	84456154;84456886	84456740;84460043	-	84456154	84460043	cassetteExon	ENSMUST00000166939.8	known	0.62	5.0	3	10;0	3	n	0.58	5.5	4	11;0	4	n	0.72	18.0	7	34;2	7	y	0.06	0.5	8	0;1	8	n	0.70	9.5	4	14;5	4	y	0.69	9.0	4	14;4	4	y	0.58	9.5	7	15;4	7	y	0.76	6.5	2	11;2	2	y	0.62	6.5	4	11;2	4	y	0.78	3.5	1	5;2	1	n	0.67	6.0	3	10;2	3	y	0.67	6.0	3	8;4	3	y	ENSMUSG00000002885.15	Adgre5	chr8	protein_coding	adhesion G protein-coupled receptor E5
known_NIR_19060	chr8	84456886	84460043	-	84456886;84458666	84458532;84460043	ES	ENSMUST00000075843.13	known	0.00	0	2.5	0	3;2	n	0.00	0	2.0	0	1;3	n	0.19	2	8.5	2	10;7	y	0.20	1	4.0	1	2;6	n	0.38	5	8.0	5	6;10	y	0.40	4	6.0	4	7;5	y	0.50	4	4.0	4	5;3	y	0.33	2	4.0	2	5;3	y	0.44	2	2.5	2	3;2	n	0.40	2	3.0	2	3;3	n	0.57	2	1.5	2	2;1	n	0.57	4	3.0	4	4;2	y	ENSMUSG00000002885.15	Adgre5	chr8	protein_coding	adhesion G protein-coupled receptor E5
known_NIR_19061	chr8	84458666	84460043	-	84456154	84460043	A3SS	ENSMUST00000166939.8	known	0.40	2	3	2	3	n	0.43	3	4	3	4	n	0.50	7	7	7	7	y	0.43	6	8	6	8	y	0.71	10	4	10	4	y	0.56	5	4	5	4	n	0.30	3	7	3	7	y	0.60	3	2	3	2	n	0.33	2	4	2	4	n	0.75	3	1	3	1	n	0.25	1	3	1	3	n	0.40	2	3	2	3	n	ENSMUSG00000002885.15	Adgre5	chr8	protein_coding	adhesion G protein-coupled receptor E5
known_NIR_19062	chr8	84460754	84460925	-	84460754	84460931	A5SS	ENSMUST00000166939.8	known	0.78	7	2	7	2	n	1.00	5	0	5	0	n	0.84	27	5	27	5	y	1.00	8	0	8	0	n	0.91	21	2	21	2	y	0.83	10	2	10	2	y	1.00	22	0	22	0	n	0.88	7	1	7	1	n	1.00	6	0	6	0	n	0.93	14	1	14	1	n	1.00	4	0	4	0	n	0.71	5	2	5	2	n	ENSMUSG00000002885.15	Adgre5	chr8	protein_coding	adhesion G protein-coupled receptor E5
known_NIR_19063	chr8	84461039	84467736	-	84460981	84467736	A3SS	ENSMUST00000166939.8	known	0.13	2	13	2	13	y	0.00	0	5	0	5	n	0.00	0	22	0	22	n	0.20	2	8	2	8	y	0.00	0	22	0	22	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	ENSMUSG00000002885.15	Adgre5	chr8	protein_coding	adhesion G protein-coupled receptor E5
known_NIR_19064	chr8	84661235	84662361	-	84661235;84661699	84661488;84662361	ES	ENSMUST00000098595.3	known	0.33	2	4.0	2	8;0	n	0.25	1	3.0	1	3;3	n	0.73	4	1.5	4	3;0	n	0.46	3	3.5	3	5;2	y	0.00	0	5.0	0	5;5	n	0.60	3	2.0	3	4;0	n	0.73	4	1.5	4	3;0	n	0.62	4	2.5	4	5;0	n	0.43	3	4.0	3	8;0	n	0.00	0	2.0	0	2;2	n	0.00	0	4.5	0	4;5	n	0.43	3	4.0	3	4;4	y	ENSMUSG00000074219.4	Gm10644	chr8	lncRNA	predicted gene 10644
known_NIR_19065	chr8	84662457	84681732	-	84662457;84662804	84662697;84681732	ES	ENSMUST00000098595.3	known	1.00	3	0.0	3	0;0	n	0.82	7	1.5	7	3;0	n	0.00	0	1.0	0	2;0	n	0.80	6	1.5	6	3;0	n	0.72	9	3.5	9	5;2	y	-	-	-	-	-	-	1.00	4	0.0	4	0;0	n	1.00	2	0.0	2	0;0	n	0.50	4	4.0	4	5;3	y	0.38	3	5.0	3	5;5	y	0.71	5	2.0	5	4;0	n	0.67	5	2.5	5	2;3	y	ENSMUSG00000074219.4	Gm10644	chr8	lncRNA	predicted gene 10644
known_NIR_19066	chr8	84824137	84824366	-	84824137	84824252	A5SS	ENSMUST00000041367.9	known	0.67	8	4	8	4	y	0.93	13	1	13	1	n	1.00	16	0	16	0	n	1.00	10	0	10	0	n	1.00	11	0	11	0	n	1.00	10	0	10	0	n	0.72	13	5	13	5	y	0.62	5	3	5	3	n	1.00	5	0	5	0	n	1.00	12	0	12	0	n	1.00	7	0	7	0	n	1.00	12	0	12	0	n	ENSMUSG00000037103.9	Dcaf15	chr8	protein_coding	DDB1 and CUL4 associated factor 15
known_NIR_19067	chr8	84865458	84865919	-	84865455	84865919	A3SS	ENSMUST00000117424.9	known	0.39	9	14	9	14	y	0.50	4	4	4	4	n	0.67	16	8	16	8	y	0.50	7	7	7	7	y	0.52	14	13	14	13	y	0.50	5	5	5	5	y	0.58	7	5	7	5	y	0.25	4	12	4	12	y	0.67	10	5	10	5	y	0.41	7	10	7	10	y	0.29	4	10	4	10	y	0.40	12	18	12	18	y	ENSMUSG00000036686.17	Cc2d1a	chr8	protein_coding	coiled-coil and C2 domain containing 1A
known_NIR_19068	chr8	84977771	84980492	-	84978340	84980492	A3SS	ENSMUST00000126435.8	known	0.04	4	89	4	89	y	0.07	5	71	5	71	y	0.02	2	80	2	80	y	0.02	1	64	1	64	n	0.03	3	96	3	96	y	0.00	0	60	0	60	n	0.03	3	88	3	88	y	0.00	0	53	0	53	n	0.06	4	65	4	65	y	0.05	6	127	6	127	y	0.07	8	99	8	99	y	0.04	3	76	3	76	y	ENSMUSG00000004996.10	Mri1	chr8	protein_coding	methylthioribose-1-phosphate isomerase 1
known_NIR_19069	chr8	84980716	84980814	-	84980716	84980805	A5SS	ENSMUST00000126435.8	known	0.00	0	74	0	74	n	0.00	0	62	0	62	n	0.00	0	70	0	70	n	0.02	1	56	1	56	n	0.00	0	76	0	76	n	0.02	1	45	1	45	n	0.04	3	76	3	76	y	0.00	0	56	0	56	n	0.00	0	62	0	62	n	0.00	0	105	0	105	n	0.01	1	115	1	115	n	0.00	0	70	0	70	n	ENSMUSG00000004996.10	Mri1	chr8	protein_coding	methylthioribose-1-phosphate isomerase 1
known_NIR_19070	chr8	84980981	84982937	-	84980981	84982873	A5SS	ENSMUST00000126435.8	known	0.00	0	48	0	48	n	0.00	0	52	0	52	n	0.00	0	71	0	71	n	0.00	0	52	0	52	n	0.00	0	65	0	65	n	0.00	0	61	0	61	n	0.00	0	72	0	72	n	0.00	0	45	0	45	n	0.10	6	52	6	52	y	0.00	0	71	0	71	n	0.00	0	82	0	82	n	0.00	0	78	0	78	n	ENSMUSG00000004996.10	Mri1	chr8	protein_coding	methylthioribose-1-phosphate isomerase 1
known_NIR_19071	chr8	84985555	84986923	-	84985555;84985880	84985742;84986923	ES	ENSMUST00000098578.10	known	0.27	6	16.5	6	14;19	y	0.42	9	12.5	9	12;13	y	0.11	3	24.0	3	21;27	y	0.30	4	9.5	4	6;13	y	0.10	2	17.5	2	15;20	y	0.27	4	11.0	4	11;11	y	0.17	3	15.0	3	12;18	y	0.11	1	8.5	1	8;9	n	0.29	3	7.5	3	4;11	y	0.36	6	10.5	6	11;10	y	0.16	2	10.5	2	14;7	y	0.06	1	14.5	1	9;20	n	ENSMUSG00000004994.13	Ccdc130	chr8	protein_coding	coiled-coil domain containing 130
known_NIR_19072	chr8	84985555	84986923	-	84985880	84986923	3pMXE	ENSMUST00000172320.2	known	0.24	6	19	6	19	y	0.41	9	13	9	13	y	0.10	3	27	3	27	y	0.24	4	13	4	13	y	0.09	2	20	2	20	y	0.27	4	11	4	11	y	0.14	3	18	3	18	y	0.10	1	9	1	9	n	0.21	3	11	3	11	y	0.38	6	10	6	10	y	0.22	2	7	2	7	n	0.05	1	20	1	20	n	ENSMUSG00000004994.13	Ccdc130	chr8	protein_coding	coiled-coil domain containing 130
known_NIR_19073	chr8	84988429	84989596	-	84988429	84989622	A5SS	ENSMUST00000098578.10	known	0.00	0	9	0	9	n	0.08	1	11	1	11	n	0.07	1	14	1	14	n	0.00	0	6	0	6	n	0.11	2	16	2	16	y	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.17	2	10	2	10	y	0.00	0	6	0	6	n	0.09	1	10	1	10	n	ENSMUSG00000004994.13	Ccdc130	chr8	protein_coding	coiled-coil domain containing 130
known_NIR_19074	chr8	85402887	85403051	-	85402887	85402970	A5SS	ENSMUST00000001975.6	known	0.19	6	25	6	25	y	0.21	4	15	4	15	y	0.11	5	42	5	42	y	0.20	7	28	7	28	y	0.24	13	41	13	41	y	0.12	4	28	4	28	y	0.14	6	36	6	36	y	0.19	5	21	5	21	y	0.14	3	19	3	19	y	0.20	11	43	11	43	y	0.27	9	24	9	24	y	0.31	11	24	11	24	y	ENSMUSG00000001910.6	Nacc1	chr8	protein_coding	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing
known_NIR_19075	chr8	85403881	85414019	-	85403881	85414304	A5SS	ENSMUST00000001975.6	known	0.12	2	15	2	15	y	0.00	0	5	0	5	n	0.10	4	38	4	38	y	0.14	3	19	3	19	y	0.00	0	41	0	41	n	0.04	1	27	1	27	n	0.21	3	11	3	11	y	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.15	3	17	3	17	y	0.38	3	5	3	5	n	0.17	2	10	2	10	y	ENSMUSG00000001910.6	Nacc1	chr8	protein_coding	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing
known_NIR_19076	chr8	85415978	85416261	+	85416005	85416261	A5SS	ENSMUST00000001974.11	known	1.00	25	0	25	0	n	1.00	20	0	20	0	n	1.00	30	0	30	0	n	0.98	43	1	43	1	n	0.93	25	2	25	2	y	0.72	13	5	13	5	y	0.96	47	2	47	2	y	0.79	19	5	19	5	y	0.97	31	1	31	1	n	0.89	42	5	42	5	y	0.97	35	1	35	1	n	0.90	38	4	38	4	y	ENSMUSG00000001909.17	Trmt1	chr8	protein_coding	tRNA methyltransferase 1
known_NIR_19077	chr8	85415978	85416337	+	85415978	85416261	A3SS	ENSMUST00000109767.9	known	0.22	7	25	7	25	y	0.09	2	20	2	20	y	0.12	4	30	4	30	y	0.09	4	43	4	43	y	0.31	11	25	11	25	y	0.35	7	13	7	13	y	0.19	11	47	11	47	y	0.21	5	19	5	19	y	0.06	2	31	2	31	y	0.07	3	42	3	42	y	0.20	9	35	9	35	y	0.21	10	38	10	38	y	ENSMUSG00000001909.17	Trmt1	chr8	protein_coding	tRNA methyltransferase 1
known_NIR_19078	chr8	85416005	85416337	+	85415978	85416337	A5SS	ENSMUST00000176053.8	known	0.00	0	7	0	7	n	0.60	3	2	3	2	n	0.00	0	4	0	4	n	0.50	4	4	4	4	n	0.15	2	11	2	11	y	0.22	2	7	2	7	n	0.00	0	11	0	11	n	0.17	1	5	1	5	n	0.67	4	2	4	2	n	0.00	0	3	0	3	n	0.18	2	9	2	9	y	0.23	3	10	3	10	y	ENSMUSG00000001909.17	Trmt1	chr8	protein_coding	tRNA methyltransferase 1
known_NIR_19079	chr8	85417201	85417402	+	85417201	85417440	A3SS	ENSMUST00000177531.8	known	0.04	2	49	2	49	y	0.00	0	40	0	40	n	0.09	5	50	5	50	y	0.02	1	52	1	52	n	0.02	1	55	1	55	n	0.00	0	11	0	11	n	0.07	4	57	4	57	y	0.05	1	21	1	21	n	0.07	3	39	3	39	y	0.00	0	55	0	55	n	0.02	1	40	1	40	n	0.00	0	77	0	77	n	ENSMUSG00000001909.17	Trmt1	chr8	protein_coding	tRNA methyltransferase 1
known_NIR_19080	chr8	85417201	85417431	+	85417201	85417440	A3SS	ENSMUST00000177531.8	known	0.00	0	49	0	49	n	0.11	5	40	5	40	y	0.02	1	50	1	50	n	0.07	4	52	4	52	y	0.07	4	55	4	55	y	0.00	0	11	0	11	n	0.07	4	57	4	57	y	0.05	1	21	1	21	n	0.07	3	39	3	39	y	0.08	5	55	5	55	y	0.11	5	40	5	40	y	0.03	2	77	2	77	y	ENSMUSG00000001909.17	Trmt1	chr8	protein_coding	tRNA methyltransferase 1
known_NIR_19081	chr8	85421953	85422057	+	85421966	85422057	A5SS	ENSMUST00000001974.11	known	0.05	3	63	3	63	y	0.01	1	72	1	72	n	0.02	1	59	1	59	n	0.00	0	79	0	79	n	0.02	2	83	2	83	y	0.00	0	23	0	23	n	0.03	3	95	3	95	y	0.00	0	31	0	31	n	0.04	2	46	2	46	y	0.02	2	84	2	84	y	0.02	1	60	1	60	n	0.00	0	83	0	83	n	ENSMUSG00000001909.17	Trmt1	chr8	protein_coding	tRNA methyltransferase 1
known_NIR_19082	chr8	85423977	85424054	+	85423967	85424054	A5SS	ENSMUST00000001974.11	known	0.00	0	63	0	63	n	0.04	3	66	3	66	y	0.04	3	64	3	64	y	0.05	4	77	4	77	y	0.06	5	74	5	74	y	0.03	1	37	1	37	n	0.00	0	70	0	70	n	0.00	0	32	0	32	n	0.05	3	58	3	58	y	0.00	0	84	0	84	n	0.06	6	97	6	97	y	0.02	2	85	2	85	y	ENSMUSG00000001909.17	Trmt1	chr8	protein_coding	tRNA methyltransferase 1
known_NIR_19083	chr8	85440486	85448272	-	85440486;85442917	85442770;85448272	ES	ENSMUST00000109764.8	known	0.91	62	6.0	62	4;8	y	0.93	44	3.5	44	7;0	n	0.90	51	5.5	51	9;2	y	0.82	73	15.5	73	23;8	y	0.90	102	11.0	102	13;9	y	0.93	27	2.0	27	3;1	n	0.90	71	8.0	71	12;4	y	0.91	50	5.0	50	8;2	y	0.91	66	6.5	66	8;5	y	0.92	117	10.5	117	16;5	y	0.93	74	5.5	74	5;6	y	0.96	91	4.0	91	5;3	y	ENSMUSG00000001911.17	Nfix	chr8	protein_coding	nuclear factor I/X
known_NIR_19084	chr8	85448447	85453098	-	85448447;85450479	85450357;85453098	ES	ENSMUST00000109764.8	known	0.08	5	61.5	5	65;58	y	0.05	2	41.0	2	46;36	y	0.05	2	42.0	2	44;40	y	0.06	5	74.5	5	90;59	y	0.10	8	75.0	8	89;61	y	0.04	1	27.5	1	29;26	n	0.22	18	62.5	18	75;50	y	0.16	6	31.0	6	35;27	y	0.06	3	51.0	3	57;45	y	0.11	10	84.0	10	102;66	y	0.05	3	60.0	3	68;52	y	0.06	5	76.5	5	82;71	y	ENSMUSG00000001911.17	Nfix	chr8	protein_coding	nuclear factor I/X
known_NIR_19085	chr8	85453231	85453753	-	85453234	85453753	A3SS	ENSMUST00000109764.8	known	0.14	13	77	13	77	y	0.16	8	41	8	41	y	0.11	8	67	8	67	y	0.22	19	68	19	68	y	0.22	24	86	24	86	y	0.38	11	18	11	18	y	0.26	24	67	24	67	y	0.14	5	31	5	31	y	0.15	11	64	11	64	y	0.10	12	109	12	109	y	0.14	10	60	10	60	y	0.27	25	66	25	66	y	ENSMUSG00000001911.17	Nfix	chr8	protein_coding	nuclear factor I/X
known_NIR_19086	chr8	85498944	85526627	-	85498944	85499983	5pMXE	ENSMUST00000109764.8	known	1.00	13	0	13	0	n	1.00	16	0	16	0	n	1.00	24	0	24	0	n	0.96	44	2	44	2	y	1.00	49	0	49	0	n	1.00	8	0	8	0	n	1.00	19	0	19	0	n	1.00	13	0	13	0	n	1.00	24	0	24	0	n	1.00	41	0	41	0	n	1.00	21	0	21	0	n	1.00	42	0	42	0	n	ENSMUSG00000001911.17	Nfix	chr8	protein_coding	nuclear factor I/X
known_NIR_19087	chr8	85562303	85562449	-	85562303	85562384	A5SS	ENSMUST00000003911.13	known	0.01	1	106	1	106	n	0.00	0	58	0	58	n	0.05	2	39	2	39	y	0.01	2	139	2	139	y	0.00	0	111	0	111	n	0.00	0	22	0	22	n	0.00	0	142	0	142	n	0.00	0	53	0	53	n	0.00	0	74	0	74	n	0.01	1	141	1	141	n	0.00	0	108	0	108	n	0.01	1	116	1	116	n	ENSMUSG00000003813.16	Rad23a	chr8	protein_coding	RAD23 homolog A, nucleotide excision repair protein
known_NIR_19088	chr8	85564219	85564318	-	85564222	85564318	A3SS	ENSMUST00000144675.8	known	0.61	60	38	60	38	y	0.38	23	37	23	37	y	0.55	17	14	17	14	y	0.46	50	58	50	58	y	0.48	46	49	46	49	y	0.55	11	9	11	9	y	0.53	87	77	87	77	y	0.62	16	10	16	10	y	0.57	44	33	44	33	y	0.50	64	63	64	63	y	0.56	59	47	59	47	y	0.47	53	59	53	59	y	ENSMUSG00000003813.16	Rad23a	chr8	protein_coding	RAD23 homolog A, nucleotide excision repair protein
known_NIR_19089	chr8	85564940	85565098	-	85564957	85565098	A3SS	ENSMUST00000003911.13	known	0.00	0	95	0	95	n	0.02	2	80	2	80	y	0.00	0	32	0	32	n	0.00	0	117	0	117	n	0.01	1	106	1	106	n	0.00	0	35	0	35	n	0.01	1	148	1	148	n	0.00	0	43	0	43	n	0.00	0	91	0	91	n	0.00	0	154	0	154	n	0.00	0	107	0	107	n	0.00	0	135	0	135	n	ENSMUSG00000003813.16	Rad23a	chr8	protein_coding	RAD23 homolog A, nucleotide excision repair protein
known_NIR_19090	chr8	85587586	85587756	+	85587672	85587756	A5SS	ENSMUST00000003906.13	known	0.03	2	64	2	64	y	0.02	1	48	1	48	n	0.03	3	98	3	98	y	0.03	2	65	2	65	y	0.03	3	91	3	91	y	0.00	0	46	0	46	n	0.08	7	82	7	82	y	0.00	0	52	0	52	n	0.04	2	46	2	46	y	0.01	1	72	1	72	n	0.00	0	58	0	58	n	0.05	3	58	3	58	y	ENSMUSG00000003808.19	Farsa	chr8	protein_coding	phenylalanyl-tRNA synthetase, alpha subunit
known_NIR_19091	chr8	85594277	85594382	+	85594277	85594379	A3SS	ENSMUST00000003906.13	known	0.17	10	50	10	50	y	0.06	3	50	3	50	y	0.00	0	95	0	95	n	0.00	0	45	0	45	n	0.09	6	62	6	62	y	0.00	0	38	0	38	n	0.04	3	65	3	65	y	0.00	0	32	0	32	n	0.05	2	38	2	38	y	0.00	0	68	0	68	n	0.06	4	64	4	64	y	0.00	0	56	0	56	n	ENSMUSG00000003808.19	Farsa	chr8	protein_coding	phenylalanyl-tRNA synthetase, alpha subunit
known_NIR_19092	chr8	85599461	85612564	+	85599461;85610213	85610060;85612564	ES	ENSMUST00000170296.2	known	0.36	2	3.5	2	1;6	n	0.50	3	3.0	3	1;5	n	0.00	0	1.5	0	1;2	n	0.00	0	3.0	0	0;6	n	0.62	4	2.5	4	3;2	n	-	-	-	-	-	-	0.00	0	4.0	0	5;3	n	0.67	1	0.5	1	1;0	n	0.44	2	2.5	2	2;3	n	0.44	4	5.0	4	3;7	y	0.75	3	1.0	3	1;1	n	0.27	2	5.5	2	9;2	y	ENSMUSG00000003824.13	Syce2	chr8	protein_coding	synaptonemal complex central element protein 2
known_NIR_19093	chr8	85635503	85635614	+	85635499	85635614	A5SS	ENSMUST00000003910.13	known	0.02	1	47	1	47	n	0.00	0	28	0	28	n	0.00	0	31	0	31	n	0.03	1	28	1	28	n	0.00	0	49	0	49	n	0.12	3	22	3	22	y	0.00	0	49	0	49	n	0.00	0	31	0	31	n	0.00	0	34	0	34	n	0.04	2	49	2	49	y	0.03	1	39	1	39	n	0.02	1	42	1	42	n	ENSMUSG00000003812.14	Dnase2a	chr8	protein_coding	deoxyribonuclease II alpha
known_NIR_19094	chr8	85635791	85636155	+	85635791	85635886	3pMXE	ENSMUST00000153215.8	known	0.04	2	52	2	52	y	0.00	0	41	0	41	n	0.00	0	45	0	45	n	0.00	0	42	0	42	n	0.00	0	55	0	55	n	0.00	0	26	0	26	n	0.00	0	58	0	58	n	0.00	0	28	0	28	n	0.00	0	31	0	31	n	0.00	0	63	0	63	n	0.00	0	31	0	31	n	0.00	0	44	0	44	n	ENSMUSG00000003812.14	Dnase2a	chr8	protein_coding	deoxyribonuclease II alpha
known_NIR_19095	chr8	85635791	85636155	+	85635791;85635964	85635886;85636155	ES	ENSMUST00000003910.13	known	0.04	2	48.5	2	52;45	y	0.00	0	40.5	0	41;40	n	0.00	0	41.5	0	45;38	n	0.00	0	41.0	0	42;40	n	0.00	0	49.5	0	55;44	n	0.00	0	26.5	0	26;27	n	0.00	0	45.0	0	58;32	n	0.00	0	28.0	0	28;28	n	0.00	0	34.0	0	31;37	n	0.00	0	58.0	0	63;53	n	0.00	0	33.5	0	31;36	n	0.00	0	43.0	0	44;42	n	ENSMUSG00000003812.14	Dnase2a	chr8	protein_coding	deoxyribonuclease II alpha
known_NIR_19096	chr8	85635791;85635964	85635886;85636401	+	85635791;85636319	85636155;85636401	MXE	ENSMUST00000145292.8	known	0.45	29.5	36.0	52;7	2;70	y	0.51	22.5	21.5	41;4	0;43	n	0.49	23.0	23.5	45;1	0;47	n	0.43	22.5	30.0	42;3	0;60	n	0.41	27.5	39.5	55;0	0;79	n	0.46	13.0	15.5	26;0	0;31	n	0.43	29.5	39.5	58;1	0;79	n	0.45	14.5	17.5	28;1	0;35	n	0.44	16.0	20.5	31;1	0;41	n	0.48	32.0	34.5	63;1	0;69	n	0.38	15.5	25.5	31;0	0;51	n	0.42	22.0	31.0	44;0	0;62	n	ENSMUSG00000003812.14	Dnase2a	chr8	protein_coding	deoxyribonuclease II alpha
known_NIR_19097	chr8	85635964	85636401	+	85635964;85636319	85636155;85636401	ES	ENSMUST00000003910.13	known	0.11	7	57.5	7	45;70	y	0.09	4	41.5	4	40;43	y	0.02	1	42.5	1	38;47	n	0.06	3	50.0	3	40;60	y	0.00	0	61.5	0	44;79	n	0.00	0	29.0	0	27;31	n	0.02	1	55.5	1	32;79	n	0.03	1	31.5	1	28;35	n	0.03	1	39.0	1	37;41	n	0.02	1	61.0	1	53;69	n	0.00	0	43.5	0	36;51	n	0.00	0	52.0	0	42;62	n	ENSMUSG00000003812.14	Dnase2a	chr8	protein_coding	deoxyribonuclease II alpha
known_NIR_19098	chr8	85640157	85647023	+	85640157	85640691	3pMXE	ENSMUST00000128400.2	known	0.41	14	20	14	20	y	0.39	16	25	16	25	y	0.43	16	21	16	21	y	0.59	16	11	16	11	y	0.55	37	30	37	30	y	0.26	7	20	7	20	y	0.60	28	19	28	19	y	0.32	10	21	10	21	y	0.41	16	23	16	23	y	0.48	25	27	25	27	y	0.52	25	23	25	23	y	0.52	33	31	33	31	y	ENSMUSG00000003812.14	Dnase2a	chr8	protein_coding	deoxyribonuclease II alpha
known_NIR_19099	chr8	85684482	85684595	-	85684493	85684595	A3SS	ENSMUST00000109738.10	known	0.00	0	72	0	72	n	0.07	6	79	6	79	y	0.11	6	50	6	50	y	0.00	0	67	0	67	n	0.04	4	86	4	86	y	0.03	1	38	1	38	n	0.04	4	95	4	95	y	0.05	2	35	2	35	y	0.00	0	72	0	72	n	0.02	2	104	2	104	y	0.00	0	98	0	98	n	0.02	2	99	2	99	y	ENSMUSG00000052926.17	Rnaseh2a	chr8	protein_coding	ribonuclease H2, large subunit
known_NIR_19100	chr8	85694497	85695727	-	85694497	85695915	A5SS	ENSMUST00000109736.9	known	0.30	3	7	3	7	y	0.00	0	3	0	3	n	0.00	0	16	0	16	n	0.10	1	9	1	9	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.07	1	13	1	13	n	0.00	0	14	0	14	n	0.05	1	18	1	18	n	0.07	2	25	2	25	y	0.06	1	15	1	15	n	0.14	3	18	3	18	y	ENSMUSG00000052926.17	Rnaseh2a	chr8	protein_coding	ribonuclease H2, large subunit
known_NIR_19101	chr8	85694497	85696351	-	85694497	85695915	A5SS	ENSMUST00000109736.9	known	0.22	2	7	2	7	n	0.00	0	3	0	3	n	0.11	2	16	2	16	y	0.00	0	9	0	9	n	0.15	2	11	2	11	y	0.14	1	6	1	6	n	0.07	1	13	1	13	n	0.00	0	14	0	14	n	0.10	2	18	2	18	y	0.04	1	25	1	25	n	0.00	0	15	0	15	n	0.00	0	18	0	18	n	ENSMUSG00000052926.17	Rnaseh2a	chr8	protein_coding	ribonuclease H2, large subunit
known_NIR_19102	chr8	85696391	85696869	+	85696391	85696781	A3SS	ENSMUST00000109734.8	known	0.92	531	46	531	46	y	0.94	516	32	516	32	y	0.92	374	34	374	34	y	0.94	715	44	715	44	y	0.92	700	58	700	58	y	0.95	263	15	263	15	y	0.94	645	44	645	44	y	0.91	286	30	286	30	y	0.92	519	48	519	48	y	0.93	837	64	837	64	y	0.92	646	53	646	53	y	0.91	661	67	661	67	y	ENSMUSG00000005161.16	Prdx2	chr8	protein_coding	peroxiredoxin 2
known_NIR_19103	chr8	85696637	85696869	+	85696391	85696869	A5SS	ENSMUST00000005292.15	known	0.00	0	531	0	531	n	0.00	0	516	0	516	n	0.00	1	374	1	374	n	0.00	0	715	0	715	n	0.00	0	700	0	700	n	0.00	1	263	1	263	n	0.00	2	645	2	645	y	0.00	0	286	0	286	n	0.00	0	519	0	519	n	0.00	3	837	3	837	y	0.00	0	646	0	646	n	0.00	0	661	0	661	n	ENSMUSG00000005161.16	Prdx2	chr8	protein_coding	peroxiredoxin 2
known_NIR_19104	chr8	85725567	85727784	+	85725153	85727784	A5SS	ENSMUST00000209764.2	known	0.16	11	56	11	56	y	0.19	17	73	17	73	y	0.06	4	65	4	65	y	0.21	11	41	11	41	y	0.27	20	54	20	54	y	0.12	4	29	4	29	y	0.06	3	51	3	51	y	0.26	9	25	9	25	y	0.22	11	38	11	38	y	0.15	17	97	17	97	y	0.22	16	56	16	56	y	0.09	6	62	6	62	y	ENSMUSG00000052566.9	Hook2	chr8	protein_coding	hook microtubule tethering protein 2
known_NIR_19105	chr8	85746679	85750807	-	85746537	85750807	A3SS	ENSMUST00000064314.10	known	0.02	2	117	2	117	y	0.02	2	124	2	124	y	0.02	3	171	3	171	y	0.01	1	115	1	115	n	0.01	1	156	1	156	n	0.00	0	100	0	100	n	0.01	1	131	1	131	n	0.00	0	76	0	76	n	0.00	0	99	0	99	n	0.02	3	130	3	130	y	0.01	1	139	1	139	n	0.03	3	109	3	109	y	ENSMUSG00000052456.10	Get3	chr8	protein_coding	guided entry of tail-anchored proteins factor 3, ATPase
known_NIR_19106	chr8	85767610	85771041	+	85767392	85771041	A5SS	ENSMUST00000093360.12	known	0.04	1	25	1	25	n	0.00	0	21	0	21	n	0.03	2	61	2	61	y	0.00	0	36	0	36	n	0.02	1	64	1	64	n	0.00	0	20	0	20	n	0.00	0	33	0	33	n	0.00	0	40	0	40	n	0.15	2	11	2	11	y	0.08	4	48	4	48	y	0.00	0	23	0	23	n	0.00	0	36	0	36	n	ENSMUSG00000031691.15	Tnpo2	chr8	protein_coding	transportin 2 (importin 3, karyopherin beta 2b)
known_NIR_19107	chr8	85781050	85781351	+	85781050	85781321	A3SS	ENSMUST00000093360.12	known	0.74	42	15	42	15	y	0.66	33	17	33	17	y	0.68	64	30	64	30	y	0.76	45	14	45	14	y	0.70	57	24	57	24	y	0.77	27	8	27	8	y	0.71	42	17	42	17	y	0.75	33	11	33	11	y	0.72	38	15	38	15	y	0.82	63	14	63	14	y	0.67	32	16	32	16	y	0.71	49	20	49	20	y	ENSMUSG00000031691.15	Tnpo2	chr8	protein_coding	transportin 2 (importin 3, karyopherin beta 2b)
known_NIR_19108	chr8	85787979	85788575	+	85787165	85788575	A5SS	ENSMUST00000095220.4	known	0.00	0	50	0	50	n	0.04	2	49	2	49	y	0.00	0	78	0	78	n	0.00	0	55	0	55	n	0.00	0	75	0	75	n	0.00	0	43	0	43	n	0.00	0	73	0	73	n	0.04	2	53	2	53	y	0.00	0	46	0	46	n	0.02	1	46	1	46	n	0.00	0	50	0	50	n	0.00	0	41	0	41	n	ENSMUSG00000008167.15	Fbxw9	chr8	protein_coding	F-box and WD-40 domain protein 9
known_NIR_19109	chr8	85792247	85792450	+	85791301	85792450	A5SS	ENSMUST00000095220.4	known	0.14	11	68	11	68	y	0.15	12	68	12	68	y	0.05	5	100	5	100	y	0.10	6	54	6	54	y	0.05	5	99	5	99	y	0.04	3	64	3	64	y	0.09	8	86	8	86	y	0.04	3	77	3	77	y	0.11	5	39	5	39	y	0.06	5	76	5	76	y	0.11	6	47	6	47	y	0.10	7	63	7	63	y	ENSMUSG00000008167.15	Fbxw9	chr8	protein_coding	F-box and WD-40 domain protein 9
known_NIR_19110	chr8	85799245	85800132	+	85799245;85800045	85799924;85800132	ES	ENSMUST00000078665.13	known	0.00	0	44.0	0	36;52	n	0.04	2	42.5	2	29;56	y	0.00	0	41.5	0	28;55	n	0.00	0	48.5	0	34;63	n	0.00	0	45.5	0	34;57	n	0.00	0	25.5	0	20;31	n	0.02	1	54.0	1	49;59	n	0.00	0	29.0	0	28;30	n	0.00	0	20.0	0	11;29	n	0.00	0	62.5	0	40;85	n	0.00	0	33.0	0	21;45	n	0.00	0	35.5	0	27;44	n	ENSMUSG00000060038.15	Dhps	chr8	protein_coding	deoxyhypusine synthase
known_NIR_19111	chr8	85799245	85800132	+	85800045	85800132	5pMXE	ENSMUST00000154575.8	known	0.00	0	52	0	52	n	0.03	2	56	2	56	y	0.00	0	55	0	55	n	0.00	0	63	0	63	n	0.00	0	57	0	57	n	0.00	0	31	0	31	n	0.02	1	59	1	59	n	0.00	0	30	0	30	n	0.00	0	29	0	29	n	0.00	0	85	0	85	n	0.00	0	45	0	45	n	0.00	0	44	0	44	n	ENSMUSG00000060038.15	Dhps	chr8	protein_coding	deoxyhypusine synthase
known_NIR_19112	chr8	85806466	85806683	-	85806466	85806749	A5SS	ENSMUST00000093357.12	known	0.03	2	57	2	57	y	0.00	0	55	0	55	n	0.00	0	50	0	50	n	0.00	0	56	0	56	n	0.00	0	92	0	92	n	0.00	0	43	0	43	n	0.00	0	91	0	91	n	0.00	0	48	0	48	n	0.02	1	45	1	45	n	0.00	0	85	0	85	n	0.02	1	62	1	62	n	0.00	0	70	0	70	n	ENSMUSG00000005150.17	Wdr83	chr8	protein_coding	WD repeat domain containing 83
known_NIR_19113	chr8	85808503	85808612	+	85808503	85808575	A3SS	ENSMUST00000079764.14	known	0.02	6	259	6	259	y	0.02	5	276	5	276	y	0.00	1	215	1	215	n	0.01	2	242	2	242	y	0.00	1	294	1	294	n	0.03	4	130	4	130	y	0.02	5	288	5	288	y	0.02	2	115	2	115	y	0.00	1	214	1	214	n	0.02	5	310	5	310	y	0.02	7	285	7	285	y	0.02	5	272	5	272	y	ENSMUSG00000059355.14	Wdr83os	chr8	protein_coding	WD repeat domain 83 opposite strand
known_NIR_19114	chr8	85810117	85811030	+	85810040	85811030	A5SS	ENSMUST00000209264.2	known	1.00	60	0	60	0	n	1.00	36	0	36	0	n	1.00	49	0	49	0	n	1.00	100	0	100	0	n	1.00	91	0	91	0	n	1.00	58	0	58	0	n	1.00	79	0	79	0	n	1.00	55	0	55	0	n	1.00	65	0	65	0	n	1.00	118	0	118	0	n	0.98	46	1	46	1	n	0.98	104	2	104	2	y	ENSMUSG00000005142.11	Man2b1	chr8	protein_coding	mannosidase 2, alpha B1
known_NIR_19115	chr8	85810117	85811270	+	85811132	85811270	A5SS&ES	ENSMUST00000209264.2	known	0.05	3	61	3	61	y	0.00	0	46	0	46	n	0.01	1	76	1	76	n	0.01	2	140	2	140	y	0.00	0	95	0	95	n	0.00	0	33	0	33	n	0.01	1	91	1	91	n	0.00	0	57	0	57	n	0.00	0	66	0	66	n	0.00	0	79	0	79	n	0.00	0	77	0	77	n	0.00	0	99	0	99	n	ENSMUSG00000005142.11	Man2b1	chr8	protein_coding	mannosidase 2, alpha B1
known_NIR_19116	chr8	85810117;85811132	85811030;85811270	+	85810117	85811270	cassetteExon	ENSMUST00000209361.2	known	0.95	60.5	3	60;61	3	y	1.00	41.0	0	36;46	0	n	0.98	62.5	1	49;76	1	n	0.98	120.0	2	100;140	2	y	1.00	93.0	0	91;95	0	n	1.00	45.5	0	58;33	0	n	0.99	85.0	1	79;91	1	n	1.00	56.0	0	55;57	0	n	1.00	65.5	0	65;66	0	n	1.00	98.5	0	118;79	0	n	1.00	61.5	0	46;77	0	n	1.00	101.5	0	104;99	0	n	ENSMUSG00000005142.11	Man2b1	chr8	protein_coding	mannosidase 2, alpha B1
known_NIR_19117	chr8	86026621	86029425	+	86026621	86027738	3pMXE	ENSMUST00000209733.2	known	0.22	2	7	2	7	n	0.30	3	7	3	7	y	0.00	0	17	0	17	n	0.18	2	9	2	9	y	0.09	2	21	2	21	y	0.08	1	11	1	11	n	0.05	1	18	1	18	n	0.33	4	8	4	8	y	0.12	1	7	1	7	n	0.10	2	18	2	18	y	0.20	2	8	2	8	y	0.14	2	12	2	12	y	ENSMUSG00000031697.13	Orc6	chr8	protein_coding	origin recognition complex, subunit 6
known_NIR_19118	chr8	86026621	86029425	+	86026621;86027867	86027738;86029425	ES	ENSMUST00000211597.2	known	0.20	2	8.0	2	7;9	y	0.33	3	6.0	3	7;5	y	0.00	0	13.5	0	17;10	n	0.17	2	10.0	2	9;11	y	0.11	2	16.0	2	21;11	y	0.09	1	10.0	1	11;9	n	0.07	1	13.0	1	18;8	n	0.36	4	7.0	4	8;6	y	0.13	1	6.5	1	7;6	n	0.12	2	14.0	2	18;10	y	0.17	2	10.0	2	8;12	y	0.12	2	14.0	2	12;16	y	ENSMUSG00000031697.13	Orc6	chr8	protein_coding	origin recognition complex, subunit 6
known_NIR_19119	chr8	86030080	86032846	+	86030080	86031838	3pMXE	ENSMUST00000211396.2	known	0.00	0	13	0	13	n	0.07	1	13	1	13	n	0.00	0	17	0	17	n	0.00	0	15	0	15	n	0.00	0	16	0	16	n	0.00	0	15	0	15	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	18	0	18	n	0.09	2	21	2	21	y	0.00	0	13	0	13	n	0.00	0	21	0	21	n	ENSMUSG00000031697.13	Orc6	chr8	protein_coding	origin recognition complex, subunit 6
known_NIR_19120	chr8	86030080	86032846	+	86030080;86031950	86031838;86032846	ES	ENSMUST00000170141.3	known	0.00	0	16.0	0	13;19	n	0.06	1	15.0	1	13;17	n	0.00	0	18.5	0	17;20	n	0.00	0	17.5	0	15;20	n	0.00	0	19.5	0	16;23	n	0.00	0	15.5	0	15;16	n	0.00	0	17.5	0	15;20	n	0.00	0	9.5	0	10;9	n	0.00	0	23.0	0	18;28	n	0.09	2	21.5	2	21;22	y	0.00	0	14.5	0	13;16	n	0.00	0	31.0	0	21;41	n	ENSMUSG00000031697.13	Orc6	chr8	protein_coding	origin recognition complex, subunit 6
known_NIR_19121	chr8	86138924	86159288	-	86138924;86153585	86153489;86159288	ES	ENSMUST00000047749.7	known	0.05	2	35.0	2	38;32	y	0.05	2	35.5	2	33;38	y	0.03	2	59.0	2	59;59	y	0.03	1	34.5	1	34;35	n	0.00	0	60.0	0	68;52	n	0.00	0	33.5	0	28;39	n	0.00	0	44.5	0	47;42	n	0.08	3	36.0	3	42;30	y	0.05	1	19.5	1	20;19	n	0.02	1	62.5	1	57;68	n	0.00	0	28.0	0	35;21	n	0.00	0	48.0	0	51;45	n	ENSMUSG00000036934.10	4921524J17Rik	chr8	protein_coding	RIKEN cDNA 4921524J17 gene
known_NIR_19122	chr8	86232496	86235808	+	86232316	86235808	A5SS	ENSMUST00000034136.12	known	0.00	0	334	0	334	n	0.01	3	321	3	321	y	0.01	10	772	10	772	y	0.01	4	493	4	493	y	0.00	2	434	2	434	y	0.01	3	302	3	302	y	0.01	3	479	3	479	y	0.02	4	220	4	220	y	0.00	0	295	0	295	n	0.00	1	541	1	541	n	0.01	3	339	3	339	y	0.00	0	423	0	423	n	ENSMUSG00000031700.12	Gpt2	chr8	protein_coding	glutamic pyruvate transaminase (alanine aminotransferase) 2
known_NIR_19123	chr8	86567732	86602263	+	86567732;86569741	86569633;86602263	ES	ENSMUST00000053771.14	known	0.50	2	2.0	2	1;3	n	1.00	1	0.0	1	0;0	n	0.48	7	7.5	7	6;9	y	0.88	11	1.5	11	3;0	n	1.00	17	0.0	17	0;0	n	0.67	6	3.0	6	4;2	y	0.62	5	3.0	5	3;3	y	0.78	9	2.5	9	1;4	n	0.89	4	0.5	4	0;1	n	0.87	13	2.0	13	2;2	y	0.70	7	3.0	7	3;3	y	0.93	14	1.0	14	0;2	n	ENSMUSG00000036879.16	Phkb	chr8	protein_coding	phosphorylase kinase beta
known_NIR_19124	chr8	86567732	86602263	+	86567732;86569741	86569650;86602263	ES	ENSMUST00000159716.8	known	0.57	2	1.5	2	0;3	n	1.00	1	0.0	1	0;0	n	0.58	7	5.0	7	1;9	n	1.00	11	0.0	11	0;0	n	1.00	17	0.0	17	0;0	n	0.86	6	1.0	6	0;2	n	0.67	5	2.5	5	2;3	y	0.82	9	2.0	9	0;4	n	0.80	4	1.0	4	1;1	n	0.90	13	1.5	13	1;2	n	0.78	7	2.0	7	1;3	n	0.93	14	1.0	14	0;2	n	ENSMUSG00000036879.16	Phkb	chr8	protein_coding	phosphorylase kinase beta
known_NIR_19125	chr8	86567732	86602263	+	86569741	86602263	A5SS&ES	ENSMUST00000160611.8	known	0.40	2	3	2	3	n	1.00	1	0	1	0	n	0.44	7	9	7	9	y	1.00	11	0	11	0	n	1.00	17	0	17	0	n	0.75	6	2	6	2	n	0.62	5	3	5	3	n	0.69	9	4	9	4	y	0.80	4	1	4	1	n	0.87	13	2	13	2	y	0.70	7	3	7	3	y	0.88	14	2	14	2	y	ENSMUSG00000036879.16	Phkb	chr8	protein_coding	phosphorylase kinase beta
known_NIR_19126	chr8	86569741;86575360	86575303;86602263	+	86569741	86602263	cassetteExon	ENSMUST00000159716.8	known	0.45	2.5	3	4;1	3	n	1.00	1.0	0	1;1	0	n	0.33	4.5	9	4;5	9	y	1.00	1.0	0	1;1	0	n	1.00	1.0	0	0;2	0	n	0.20	0.5	2	0;1	2	n	0.00	0.0	3	0;0	3	n	0.11	0.5	4	0;1	4	n	0.33	0.5	1	0;1	1	n	0.50	2.0	2	1;3	2	n	0.33	1.5	3	2;1	3	n	0.50	2.0	2	2;2	2	n	ENSMUSG00000036879.16	Phkb	chr8	protein_coding	phosphorylase kinase beta
known_NIR_19127	chr8	86575360	86602263	+	86567732	86602263	A5SS	ENSMUST00000161850.8	known	0.33	1	2	1	2	n	0.50	1	1	1	1	n	0.42	5	7	5	7	y	0.08	1	11	1	11	n	0.11	2	17	2	17	y	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.10	1	9	1	9	n	0.20	1	4	1	4	n	0.19	3	13	3	13	y	0.12	1	7	1	7	n	0.12	2	14	2	14	y	ENSMUSG00000036879.16	Phkb	chr8	protein_coding	phosphorylase kinase beta
known_NIR_19128	chr8	8672444	8689206	-	8672444;8673240	8673148;8689206	ES	ENSMUST00000001319.15	known	0.00	0	0.5	0	1;0	n	0.00	0	0.5	0	0;1	n	0.00	0	1.0	0	0;2	n	-	-	-	-	-	-	0.00	0	3.0	0	5;1	n	0.00	0	3.5	0	4;3	n	0.29	2	5.0	2	4;6	y	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	0.00	0	1.0	0	2;0	n	-	-	-	-	-	-	0.00	0	4.0	0	7;1	n	ENSMUSG00000001300.17	Efnb2	chr8	protein_coding	ephrin B2
known_NIR_19129	chr8	8731467	8733748	-	8731467	8731891	5pMXE	ENSMUST00000207070.2	known	0.93	64	5	64	5	y	0.93	81	6	81	6	y	0.98	94	2	94	2	y	0.96	82	3	82	3	y	0.95	118	6	118	6	y	1.00	53	0	53	0	n	0.98	164	4	164	4	y	1.00	54	0	54	0	n	1.00	85	0	85	0	n	0.96	131	5	131	5	y	0.96	68	3	68	3	y	0.97	85	3	85	3	y	ENSMUSG00000040459.12	Arglu1	chr8	protein_coding	arginine and glutamate rich 1
known_NIR_19130	chr8	8731467;8731948	8731841;8733748	-	8731467	8733748	cassetteExon	ENSMUST00000048545.10	known	0.01	0.5	64	0;1	64	n	0.02	2.0	81	0;4	81	n	0.02	2.0	94	1;3	94	n	0.01	1.0	82	0;2	82	n	0.02	3.0	118	3;3	118	y	0.03	1.5	53	0;3	53	n	0.02	3.5	164	0;7	164	n	0.00	0.0	54	0;0	54	n	0.02	2.0	85	0;4	85	n	0.02	2.0	131	0;4	131	n	0.00	0.0	68	0;0	68	n	0.03	3.0	85	0;6	85	n	ENSMUSG00000040459.12	Arglu1	chr8	protein_coding	arginine and glutamate rich 1
known_NIR_19131	chr8	8731467;8731948	8731891;8733748	-	8731467	8733748	cassetteExon	ENSMUST00000048545.10	known	0.04	3.0	64	5;1	64	n	0.06	5.0	81	6;4	81	y	0.03	2.5	94	2;3	94	y	0.03	2.5	82	3;2	82	y	0.04	4.5	118	6;3	118	y	0.03	1.5	53	0;3	53	n	0.03	5.5	164	4;7	164	y	0.00	0.0	54	0;0	54	n	0.02	2.0	85	0;4	85	n	0.03	4.5	131	5;4	131	y	0.02	1.5	68	3;0	68	n	0.05	4.5	85	3;6	85	y	ENSMUSG00000040459.12	Arglu1	chr8	protein_coding	arginine and glutamate rich 1
known_NIR_19132	chr8	88846479	88856323	+	88846479;88851783	88851710;88856323	ES	ENSMUST00000095214.10	known	0.05	3	61.0	3	60;62	y	0.00	0	33.5	0	32;35	n	0.00	0	71.5	0	69;74	n	0.00	0	44.0	0	40;48	n	0.03	2	62.0	2	64;60	y	0.02	1	41.5	1	39;44	n	0.03	2	57.5	2	50;65	y	0.00	0	35.0	0	30;40	n	0.00	0	31.0	0	29;33	n	0.00	0	67.5	0	60;75	n	0.00	0	35.0	0	24;46	n	0.00	0	49.0	0	44;54	n	ENSMUSG00000036810.17	Cnep1r1	chr8	protein_coding	CTD nuclear envelope phosphatase 1 regulatory subunit 1
known_NIR_19133	chr8	88857029	88857364	+	88857029	88860416	A3SS	ENSMUST00000095214.10	known	0.05	2	39	2	39	y	0.03	1	32	1	32	n	0.04	2	44	2	44	y	0.05	3	53	3	53	y	0.04	2	53	2	53	y	0.00	0	28	0	28	n	0.07	4	57	4	57	y	0.05	2	36	2	36	y	0.07	2	26	2	26	y	0.07	4	54	4	54	y	0.13	5	33	5	33	y	0.04	2	43	2	43	y	ENSMUSG00000036810.17	Cnep1r1	chr8	protein_coding	CTD nuclear envelope phosphatase 1 regulatory subunit 1
known_NIR_19134	chr8	88974244	88977268	+	88974244	88975733	3pMXE	ENSMUST00000125043.2	known	0.04	1	25	1	25	n	0.00	0	29	0	29	n	0.00	0	40	0	40	n	0.05	2	36	2	36	y	0.00	0	64	0	64	n	0.00	0	12	0	12	n	0.00	0	38	0	38	n	0.00	0	37	0	37	n	0.00	0	41	0	41	n	0.00	0	43	0	43	n	0.00	0	42	0	42	n	0.00	0	55	0	55	n	ENSMUSG00000036779.13	Tent4b	chr8	protein_coding	terminal nucleotidyltransferase 4B
known_NIR_19135	chr8	88974244;88975861	88975733;88977268	+	88974244	88977268	cassetteExon	ENSMUST00000066748.10	known	0.97	28.0	1	25;31	1	n	1.00	29.0	0	29;29	0	n	1.00	39.0	0	40;38	0	n	0.96	42.5	2	36;49	2	y	1.00	59.0	0	64;54	0	n	1.00	20.0	0	12;28	0	n	1.00	37.0	0	38;36	0	n	1.00	35.5	0	37;34	0	n	1.00	37.0	0	41;33	0	n	1.00	44.5	0	43;46	0	n	1.00	33.5	0	42;25	0	n	1.00	56.5	0	55;58	0	n	ENSMUSG00000036779.13	Tent4b	chr8	protein_coding	terminal nucleotidyltransferase 4B
known_NIR_19136	chr8	88978913	88979155	+	88978913	88979014	A3SS	ENSMUST00000066748.10	known	0.29	15	37	15	37	y	0.08	3	35	3	35	y	0.33	16	32	16	32	y	0.15	12	68	12	68	y	0.16	12	65	12	65	y	0.11	3	24	3	24	y	0.12	7	52	7	52	y	0.15	5	29	5	29	y	0.15	7	41	7	41	y	0.15	12	69	12	69	y	0.21	9	33	9	33	y	0.16	7	38	7	38	y	ENSMUSG00000036779.13	Tent4b	chr8	protein_coding	terminal nucleotidyltransferase 4B
known_NIR_19137	chr8	89060847	89063709	-	89060844	89063709	A3SS	ENSMUST00000034085.8	known	0.07	5	69	5	69	y	0.11	8	68	8	68	y	0.13	6	41	6	41	y	0.07	7	89	7	89	y	0.11	13	106	13	106	y	0.10	4	35	4	35	y	0.06	5	84	5	84	y	0.03	1	38	1	38	n	0.14	12	74	12	74	y	0.08	8	95	8	95	y	0.07	7	92	7	92	y	0.06	5	73	5	73	y	ENSMUSG00000031660.14	Brd7	chr8	protein_coding	bromodomain containing 7
known_NIR_19138	chr8	89423727	89431854	+	89429066	89431854	5pMXE	ENSMUST00000209206.2	known	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.06	1	15	1	15	n	0.00	0	11	0	11	n	0.14	3	18	3	18	y	0.00	0	5	0	5	n	0.31	4	9	4	9	y	0.29	6	15	6	15	y	0.25	4	12	4	12	y	0.50	5	5	5	5	y	0.33	2	4	2	4	n	0.14	2	12	2	12	y	ENSMUSG00000036712.16	Cyld	chr8	protein_coding	CYLD lysine 63 deubiquitinase
known_NIR_19139	chr8	89423727;89429066	89428933;89431854	+	89423727	89431854	cassetteExon	ENSMUST00000043526.15	known	1.00	1.5	0	0;3	0	n	0.60	1.5	1	1;2	1	n	0.90	9.0	1	3;15	1	n	1.00	7.0	0	3;11	0	n	0.78	10.5	3	3;18	3	y	1.00	4.5	0	4;5	0	n	0.58	5.5	4	2;9	4	y	0.56	7.5	6	0;15	6	n	0.62	6.5	4	1;12	4	n	0.41	3.5	5	2;5	5	y	0.50	2.0	2	0;4	2	n	0.79	7.5	2	3;12	2	y	ENSMUSG00000036712.16	Cyld	chr8	protein_coding	CYLD lysine 63 deubiquitinase
known_NIR_19140	chr8	89436624	89442631	+	89436624	89445926	A3SS	ENSMUST00000211554.2	known	0.18	3	14	3	14	y	0.13	2	13	2	13	y	0.03	1	33	1	33	n	0.00	0	37	0	37	n	0.00	0	37	0	37	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.00	0	28	0	28	n	0.00	0	17	0	17	n	0.00	0	41	0	41	n	0.00	0	21	0	21	n	0.00	0	29	0	29	n	ENSMUSG00000036712.16	Cyld	chr8	protein_coding	CYLD lysine 63 deubiquitinase
known_NIR_19141	chr8	89449840	89456087	+	89449840	89458303	A3SS	ENSMUST00000209206.2	known	0.64	7	4	7	4	y	0.80	16	4	16	4	y	0.87	20	3	20	3	y	0.91	30	3	30	3	y	0.96	26	1	26	1	n	1.00	7	0	7	0	n	1.00	18	0	18	0	n	0.83	5	1	5	1	n	0.92	12	1	12	1	n	0.92	23	2	23	2	y	0.62	8	5	8	5	y	0.92	22	2	22	2	y	ENSMUSG00000036712.16	Cyld	chr8	protein_coding	CYLD lysine 63 deubiquitinase
known_NIR_19142	chr8	89457449	89458303	+	89449840	89458303	A5SS	ENSMUST00000209206.2	known	0.85	22	4	22	4	y	0.78	14	4	14	4	y	0.93	41	3	41	3	y	0.89	24	3	24	3	y	0.98	46	1	46	1	n	1.00	12	0	12	0	n	1.00	33	0	33	0	n	0.95	18	1	18	1	n	0.94	15	1	15	1	n	0.95	41	2	41	2	y	0.81	21	5	21	5	y	0.94	31	2	31	2	y	ENSMUSG00000036712.16	Cyld	chr8	protein_coding	CYLD lysine 63 deubiquitinase
known_NIR_19143	chr8	91576387	91597999	+	91576387	91600832	A3SS	ENSMUST00000211034.2	known	0.00	0	6	0	6	n	0.12	1	7	1	7	n	0.10	1	9	1	9	n	0.20	2	8	2	8	y	0.11	1	8	1	8	n	0.00	0	10	0	10	n	0.06	1	15	1	15	n	0.20	2	8	2	8	y	0.00	0	7	0	7	n	0.13	2	13	2	13	y	0.10	1	9	1	9	n	0.00	0	7	0	7	n	ENSMUSG00000056608.15	Chd9	chr8	protein_coding	chromodomain helicase DNA binding protein 9
known_NIR_19144	chr8	91576387	91597999	+	91576387	91617605	A3SS	ENSMUST00000209474.2	known	0.00	0	14	0	14	n	0.04	1	26	1	26	n	0.07	1	14	1	14	n	0.15	2	11	2	11	y	0.04	1	25	1	25	n	0.00	0	28	0	28	n	0.08	1	11	1	11	n	0.11	2	17	2	17	y	0.00	0	5	0	5	n	0.11	2	17	2	17	y	0.12	1	7	1	7	n	0.00	0	16	0	16	n	ENSMUSG00000056608.15	Chd9	chr8	protein_coding	chromodomain helicase DNA binding protein 9
known_NIR_19145	chr8	91576387	91600832	+	91576387	91617605	A3SS	ENSMUST00000209474.2	known	0.30	6	14	6	14	y	0.21	7	26	7	26	y	0.39	9	14	9	14	y	0.42	8	11	8	11	y	0.24	8	25	8	25	y	0.26	10	28	10	28	y	0.58	15	11	15	11	y	0.32	8	17	8	17	y	0.58	7	5	7	5	y	0.43	13	17	13	17	y	0.56	9	7	9	7	y	0.30	7	16	7	16	y	ENSMUSG00000056608.15	Chd9	chr8	protein_coding	chromodomain helicase DNA binding protein 9
known_NIR_19146	chr8	91576387	91600832	+	91576387	91658877	A3SS	ENSMUST00000048665.8	known	1.00	6	0	6	0	n	1.00	7	0	7	0	n	1.00	9	0	9	0	n	1.00	8	0	8	0	n	1.00	8	0	8	0	n	1.00	10	0	10	0	n	1.00	15	0	15	0	n	1.00	8	0	8	0	n	1.00	7	0	7	0	n	1.00	13	0	13	0	n	0.82	9	2	9	2	y	1.00	7	0	7	0	n	ENSMUSG00000056608.15	Chd9	chr8	protein_coding	chromodomain helicase DNA binding protein 9
known_NIR_19147	chr8	91760872	91761536	+	91760872	91761533	A3SS	ENSMUST00000048665.8	known	0.54	7	6	7	6	y	0.45	5	6	5	6	y	0.35	6	11	6	11	y	0.12	1	7	1	7	n	0.26	5	14	5	14	y	0.25	2	6	2	6	n	0.11	1	8	1	8	n	0.67	6	3	6	3	n	0.08	1	11	1	11	n	0.29	4	10	4	10	y	0.00	0	3	0	3	n	0.20	2	8	2	8	y	ENSMUSG00000056608.15	Chd9	chr8	protein_coding	chromodomain helicase DNA binding protein 9
known_NIR_19148	chr8	91763226	91764035	+	91763178	91764035	A5SS	ENSMUST00000048665.8	known	0.70	7	3	7	3	y	1.00	11	0	11	0	n	0.78	18	5	18	5	y	0.94	15	1	15	1	n	0.75	15	5	15	5	y	0.67	6	3	6	3	n	0.70	7	3	7	3	y	1.00	14	0	14	0	n	0.89	8	1	8	1	n	0.78	14	4	14	4	y	0.65	11	6	11	6	y	0.62	8	5	8	5	y	ENSMUSG00000056608.15	Chd9	chr8	protein_coding	chromodomain helicase DNA binding protein 9
known_NIR_19149	chr8	91805572	91812061	+	91805572;91810055	91809927;91812061	ES	ENSMUST00000034091.8	known	0.00	0	16.0	0	18;14	n	0.00	0	11.5	0	10;13	n	0.00	0	12.5	0	10;15	n	0.00	0	36.0	0	34;38	n	0.00	0	26.5	0	31;22	n	0.00	0	15.5	0	14;17	n	0.08	2	23.0	2	28;18	y	0.00	0	20.0	0	23;17	n	0.00	0	18.5	0	20;17	n	0.00	0	27.0	0	21;33	n	0.00	0	19.5	0	19;20	n	0.03	1	30.5	1	29;32	n	ENSMUSG00000031666.16	Rbl2	chr8	protein_coding	RB transcriptional corepressor like 2
known_NIR_19150	chr8	91822286	91823422	+	91822286	91823392	A3SS	ENSMUST00000034091.8	known	0.00	0	18	0	18	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	33	0	33	n	0.04	2	45	2	45	y	0.00	0	16	0	16	n	0.00	0	33	0	33	n	0.00	0	13	0	13	n	0.00	0	28	0	28	n	0.00	0	39	0	39	n	0.00	0	20	0	20	n	0.00	0	49	0	49	n	ENSMUSG00000031666.16	Rbl2	chr8	protein_coding	RB transcriptional corepressor like 2
known_NIR_19151	chr8	91856471	91857669	-	91856433	91857669	A3SS	ENSMUST00000120426.9	known	0.03	1	31	1	31	n	0.05	1	19	1	19	n	0.03	1	32	1	32	n	0.00	0	23	0	23	n	0.00	0	56	0	56	n	0.05	1	18	1	18	n	0.02	1	48	1	48	n	0.00	0	22	0	22	n	0.10	2	18	2	18	y	0.02	1	56	1	56	n	0.00	0	34	0	34	n	0.06	2	34	2	34	y	ENSMUSG00000031667.17	Aktip	chr8	protein_coding	AKT interacting protein
known_NIR_19152	chr8	91857776	91860528	-	91857780	91860528	A3SS	ENSMUST00000125257.3	known	0.25	5	15	5	15	y	0.36	8	14	8	14	y	0.25	5	15	5	15	y	0.24	4	13	4	13	y	0.24	9	28	9	28	y	0.31	4	9	4	9	y	0.37	15	26	15	26	y	0.10	1	9	1	9	n	0.21	3	11	3	11	y	0.37	10	17	10	17	y	0.20	3	12	3	12	y	0.15	4	23	4	23	y	ENSMUSG00000031667.17	Aktip	chr8	protein_coding	AKT interacting protein
known_NIR_19153	chr8	91857780;91858517	91858465;91860528	-	91857780	91860528	cassetteExon	ENSMUST00000125257.3	known	0.00	0.0	15	0;0	15	n	0.00	0.0	14	0;0	14	n	0.00	0.0	15	0;0	15	n	0.10	1.5	13	1;2	13	n	0.02	0.5	28	0;1	28	n	0.00	0.0	9	0;0	9	n	0.09	2.5	26	3;2	26	y	0.00	0.0	9	0;0	9	n	0.00	0.0	11	0;0	11	n	0.00	0.0	17	0;0	17	n	0.00	0.0	12	0;0	12	n	0.00	0.0	23	0;0	23	n	ENSMUSG00000031667.17	Aktip	chr8	protein_coding	AKT interacting protein
known_NIR_19154	chr8	91858517	91860528	-	91857776	91860528	A3SS	ENSMUST00000109609.9	known	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.33	2	4	2	4	n	0.10	1	9	1	9	n	0.00	0	4	0	4	n	0.12	2	15	2	15	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000031667.17	Aktip	chr8	protein_coding	AKT interacting protein
known_NIR_19155	chr8	93847000;93847266	93847240;93849728	-	93847000	93849728	cassetteExon	ENSMUST00000034189.17	known	0.00	3.5	3306	0;7	3306	n	0.00	3.5	2557	0;7	2557	n	0.00	0.0	1108	0;0	1108	n	0.00	3.0	3850	0;6	3850	n	0.00	6.5	2495	0;13	2495	n	0.00	0.0	510	0;0	510	n	0.00	1.5	2641	0;3	2641	n	0.00	0.0	811	0;0	811	n	0.00	2.0	4084	0;4	4084	n	0.00	4.5	5543	0;9	5543	n	0.00	5.5	4470	0;11	4470	n	0.00	7.0	6550	2;12	6550	y	ENSMUSG00000057400.15	Ces1c	chr8	protein_coding	carboxylesterase 1C
known_NIR_19156	chr8	93950727	93955998	-	93950730	93955998	A3SS	ENSMUST00000034173.14	known	0.59	57	39	57	39	y	0.46	45	53	45	53	y	0.56	5	4	5	4	n	0.42	58	80	58	80	y	0.56	32	25	32	25	y	0.77	10	3	10	3	y	0.51	50	48	50	48	y	0.30	3	7	3	7	y	0.53	78	70	78	70	y	0.46	113	132	113	132	y	0.42	55	77	55	77	y	0.49	86	88	86	88	y	ENSMUSG00000061959.14	Ces1e	chr8	protein_coding	carboxylesterase 1E
known_NIR_19157	chr8	94002074;94003257	94003184;94006277	-	94002074	94006277	cassetteExon	ENSMUST00000034178.9	known	0.04	11.0	302	10;12	302	y	0.02	6.0	249	8;4	249	y	0.00	0.0	4	0;0	4	n	0.03	16.0	505	20;12	505	y	0.01	1.5	127	1;2	127	n	0.00	0.0	3	0;0	3	n	0.02	10.5	470	13;8	470	y	0.00	0.0	5	0;0	5	n	0.03	17.5	611	18;17	611	y	0.02	27.5	1082	29;26	1082	y	0.04	27.0	732	33;21	732	y	0.02	15.5	912	16;15	912	y	ENSMUSG00000031725.9	Ces1f	chr8	protein_coding	carboxylesterase 1F
known_NIR_19158	chr8	94699942	94700555	-	94699942	94700687	A5SS	ENSMUST00000053766.14	known	0.00	0	667	0	667	n	0.00	0	591	0	591	n	0.00	0	758	0	758	n	0.00	0	721	0	721	n	0.00	0	1093	0	1093	n	0.00	2	458	2	458	y	0.00	4	936	4	936	y	0.00	0	523	0	523	n	0.00	0	526	0	526	n	0.00	0	846	0	846	n	0.00	0	591	0	591	n	0.00	0	860	0	860	n	ENSMUSG00000031751.15	Amfr	chr8	protein_coding	autocrine motility factor receptor
known_NIR_19159	chr8	94731853	94738636	-	94731853	94738847	A5SS	ENSMUST00000053766.14	known	0.07	19	264	19	264	y	0.03	7	203	7	203	y	0.05	21	397	21	397	y	0.07	28	347	28	347	y	0.07	40	563	40	563	y	0.05	14	254	14	254	y	0.08	32	356	32	356	y	0.08	24	273	24	273	y	0.08	16	197	16	197	y	0.10	39	366	39	366	y	0.06	14	220	14	220	y	0.08	33	381	33	381	y	ENSMUSG00000031751.15	Amfr	chr8	protein_coding	autocrine motility factor receptor
known_NIR_19160	chr8	94746332	94751170	-	94746332;94749517	94749403;94751170	ES	ENSMUST00000034204.11	known	0.00	0	66.0	0	55;77	n	0.00	0	79.5	0	84;75	n	0.00	0	150.5	0	129;172	n	0.00	0	69.5	0	66;73	n	0.02	2	96.5	2	114;79	y	0.01	1	84.5	1	75;94	n	0.01	1	94.5	1	97;92	n	0.03	2	57.5	2	56;59	y	0.02	1	64.5	1	67;62	n	0.02	2	99.5	2	94;105	y	0.02	2	86.5	2	87;86	y	0.03	4	117.5	4	105;130	y	ENSMUSG00000031754.11	Nudt21	chr8	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 21
known_NIR_19161	chr8	94746332	94751170	-	94749517	94751170	3pMXE	ENSMUST00000212911.2	known	0.00	0	77	0	77	n	0.00	0	75	0	75	n	0.00	0	172	0	172	n	0.00	0	73	0	73	n	0.02	2	79	2	79	y	0.01	1	94	1	94	n	0.01	1	92	1	92	n	0.03	2	59	2	59	y	0.02	1	62	1	62	n	0.02	2	105	2	105	y	0.02	2	86	2	86	y	0.03	4	130	4	130	y	ENSMUSG00000031754.11	Nudt21	chr8	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 21
known_NIR_19162	chr8	94759130	94763254	-	94759130	94763405	A5SS	ENSMUST00000034204.11	known	0.00	0	56	0	56	n	0.03	1	35	1	35	n	0.02	2	113	2	113	y	0.03	2	56	2	56	y	0.05	5	94	5	94	y	0.02	1	51	1	51	n	0.03	2	61	2	61	y	0.00	0	40	0	40	n	0.03	1	39	1	39	n	0.00	0	59	0	59	n	0.04	2	49	2	49	y	0.01	1	72	1	72	n	ENSMUSG00000031754.11	Nudt21	chr8	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 21
known_NIR_19163	chr8	94764070	94773900	+	94764070	94765593	3pMXE	ENSMUST00000141636.2	known	0.14	3	18	3	18	y	0.08	1	11	1	11	n	0.10	2	19	2	19	y	0.14	3	18	3	18	y	0.00	0	34	0	34	n	0.00	0	17	0	17	n	0.16	3	16	3	16	y	0.00	0	18	0	18	n	0.09	1	10	1	10	n	0.00	0	17	0	17	n	0.10	2	18	2	18	y	0.13	2	13	2	13	y	ENSMUSG00000033009.16	Ogfod1	chr8	protein_coding	2-oxoglutarate and iron-dependent oxygenase domain containing 1
known_NIR_19164	chr8	94764070	94773900	+	94764070;94765738	94765593;94773900	ES	ENSMUST00000109556.9	known	0.18	3	14.0	3	18;10	y	0.10	1	9.0	1	11;7	n	0.11	2	16.5	2	19;14	y	0.15	3	17.0	3	18;16	y	0.00	0	27.5	0	34;21	n	0.00	0	11.0	0	17;5	n	0.19	3	13.0	3	16;10	y	0.00	0	17.0	0	18;16	n	0.12	1	7.5	1	10;5	n	0.00	0	13.0	0	17;9	n	0.12	2	14.0	2	18;10	y	0.14	2	12.0	2	13;11	y	ENSMUSG00000033009.16	Ogfod1	chr8	protein_coding	2-oxoglutarate and iron-dependent oxygenase domain containing 1
known_NIR_19165	chr8	94899580	94899755	+	94899503	94899755	A5SS	ENSMUST00000034214.8	known	0.00	4	12146	4	12146	y	0.00	10	21337	10	21337	y	0.00	19	43685	19	43685	y	0.00	5	9946	5	9946	y	0.00	6	26125	6	26125	y	0.00	11	24390	11	24390	y	0.00	8	32928	8	32928	y	0.00	11	17023	11	17023	y	0.00	3	4165	3	4165	y	0.00	0	12515	0	12515	n	0.00	1	2908	1	2908	n	0.00	5	11551	5	11551	y	ENSMUSG00000031762.8	Mt2	chr8	protein_coding	metallothionein 2
known_NIR_19166	chr8	95114314	95115984	+	95113366	95115984	A5SS	ENSMUST00000161576.8	known	0.01	10	976	10	976	y	0.00	4	1033	4	1033	y	0.00	1	970	1	970	n	0.01	6	1138	6	1138	y	0.00	5	1242	5	1242	y	0.00	2	717	2	717	y	0.00	4	899	4	899	y	0.00	0	701	0	701	n	0.01	6	579	6	579	y	0.01	7	1042	7	1042	y	0.01	8	868	8	868	y	0.00	2	903	2	903	y	ENSMUSG00000031770.17	Herpud1	chr8	protein_coding	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1
known_NIR_19167	chr8	95116061	95116152	+	95116061	95116149	A3SS	ENSMUST00000161576.8	known	0.08	103	1190	103	1190	y	0.07	101	1274	101	1274	y	0.06	73	1191	73	1191	y	0.08	116	1412	116	1412	y	0.06	101	1528	101	1528	y	0.07	66	903	66	903	y	0.08	96	1140	96	1140	y	0.08	76	875	76	875	y	0.07	62	797	62	797	y	0.08	112	1363	112	1363	y	0.07	77	1045	77	1045	y	0.07	94	1205	94	1205	y	ENSMUSG00000031770.17	Herpud1	chr8	protein_coding	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1
known_NIR_19168	chr8	95161061	95186320	+	95161061;95172761	95172686;95186320	ES	ENSMUST00000211816.2	known	0.25	1	3.0	1	4;2	n	0.00	0	3.5	0	5;2	n	0.20	1	4.0	1	3;5	n	0.16	2	10.5	2	7;14	y	0.00	0	9.5	0	9;10	n	0.55	3	2.5	3	2;3	n	0.18	2	9.0	2	9;9	y	0.50	2	2.0	2	0;4	n	0.00	0	7.5	0	6;9	n	0.08	1	12.0	1	12;12	n	0.33	3	6.0	3	5;7	y	0.48	5	5.5	5	2;9	y	ENSMUSG00000074151.14	Nlrc5	chr8	protein_coding	NLR family, CARD domain containing 5
known_NIR_19169	chr8	95161061;95186427	95186320;95196445	+	95161061;95172761	95172686;95196445	MXE	ENSMUST00000212382.2	known	0.53	5.0	4.5	1;9	4;5	n	0.27	1.5	4.0	0;3	5;3	n	0.69	4.5	2.0	1;8	3;1	n	0.60	6.0	4.0	2;10	7;1	n	0.53	8.0	7.0	0;16	9;5	n	0.82	4.5	1.0	3;6	2;0	n	0.52	5.5	5.0	2;9	9;1	n	1.00	4.5	0.0	2;7	0;0	n	0.50	5.0	5.0	0;10	6;4	n	0.58	9.0	6.5	1;17	12;1	n	0.72	6.5	2.5	3;10	5;0	n	0.81	12.5	3.0	5;20	2;4	y	ENSMUSG00000074151.14	Nlrc5	chr8	protein_coding	NLR family, CARD domain containing 5
known_NIR_19170	chr8	95172761;95186427	95186320;95196445	+	95172761	95196445	cassetteExon	ENSMUST00000212382.2	known	0.52	5.5	5	2;9	5	y	0.45	2.5	3	2;3	3	n	0.87	6.5	1	5;8	1	n	0.92	12.0	1	14;10	1	n	0.72	13.0	5	10;16	5	y	1.00	4.5	0	3;6	0	n	0.90	9.0	1	9;9	1	n	1.00	5.5	0	4;7	0	n	0.70	9.5	4	9;10	4	y	0.94	14.5	1	12;17	1	n	1.00	8.5	0	7;10	0	n	0.78	14.5	4	9;20	4	y	ENSMUSG00000074151.14	Nlrc5	chr8	protein_coding	NLR family, CARD domain containing 5
known_NIR_19171	chr8	95210784	95211166	+	95210760	95211166	A5SS	ENSMUST00000211816.2	known	0.00	0	14	0	14	n	0.05	1	18	1	18	n	0.18	3	14	3	14	y	0.05	1	19	1	19	n	0.00	0	19	0	19	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.12	3	21	3	21	y	0.11	1	8	1	8	n	0.00	0	19	0	19	n	ENSMUSG00000074151.14	Nlrc5	chr8	protein_coding	NLR family, CARD domain containing 5
known_NIR_19172	chr8	95275173	95275964	+	95275173	95277798	A3SS	ENSMUST00000048653.10	known	0.14	4	24	4	24	y	0.08	1	12	1	12	n	0.03	1	32	1	32	n	0.05	1	20	1	20	n	0.00	0	36	0	36	n	0.09	2	20	2	20	y	0.00	0	28	0	28	n	0.09	3	32	3	32	y	0.00	0	25	0	25	n	0.08	2	24	2	24	y	0.00	0	15	0	15	n	0.03	1	30	1	30	n	ENSMUSG00000034361.11	Cpne2	chr8	protein_coding	copine II
known_NIR_19173	chr8	95290718	95295222	+	95290718	95295219	A3SS	ENSMUST00000048653.10	known	0.08	4	45	4	45	y	0.02	1	60	1	60	n	0.11	10	83	10	83	y	0.03	1	37	1	37	n	0.01	1	69	1	69	n	0.04	2	47	2	47	y	0.05	3	63	3	63	y	0.03	1	35	1	35	n	0.08	3	35	3	35	y	0.03	2	63	2	63	y	0.02	1	42	1	42	n	0.07	4	54	4	54	y	ENSMUSG00000034361.11	Cpne2	chr8	protein_coding	copine II
known_NIR_19174	chr8	95316035	95328125	-	95316035	95317801	A5SS&ES	ENSMUST00000212765.2	known	0.98	41	1	41	1	n	0.93	26	2	26	2	y	0.95	54	3	54	3	y	0.96	45	2	45	2	y	0.93	52	4	52	4	y	1.00	26	0	26	0	n	1.00	45	0	45	0	n	0.97	36	1	36	1	n	0.98	42	1	42	1	n	0.96	45	2	45	2	y	1.00	30	0	30	0	n	0.98	45	1	45	1	n	ENSMUSG00000031774.9	Psme3ip1	chr8	protein_coding	proteasome activator subunit 3 interacting protein 1
known_NIR_19175	chr8	95316035	95328125	-	95316035	95323679	A5SS&ES	ENSMUST00000212791.2	known	0.98	41	1	41	1	n	1.00	26	0	26	0	n	1.00	54	0	54	0	n	0.90	45	5	45	5	y	0.91	52	5	52	5	y	0.96	26	1	26	1	n	0.98	45	1	45	1	n	0.97	36	1	36	1	n	0.95	42	2	42	2	y	0.90	45	5	45	5	y	0.94	30	2	30	2	y	0.98	45	1	45	1	n	ENSMUSG00000031774.9	Psme3ip1	chr8	protein_coding	proteasome activator subunit 3 interacting protein 1
known_NIR_19176	chr8	95316035	95328172	-	95316035	95317801	A5SS&ES	ENSMUST00000213008.2	known	0.00	0	1	0	1	n	0.50	2	2	2	2	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.60	6	4	6	4	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000031774.9	Psme3ip1	chr8	protein_coding	proteasome activator subunit 3 interacting protein 1
known_NIR_19177	chr8	95316035	95328172	-	95316035	95323679	A5SS&ES	ENSMUST00000212791.2	known	0.00	0	1	0	1	n	1.00	2	0	2	0	n	1.00	1	0	1	0	n	0.00	0	5	0	5	n	0.55	6	5	6	5	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	ENSMUSG00000031774.9	Psme3ip1	chr8	protein_coding	proteasome activator subunit 3 interacting protein 1
known_NIR_19178	chr8	95316035	95328172	-	95316035	95328125	A5SS	ENSMUST00000034226.8	known	0.00	0	41	0	41	n	0.07	2	26	2	26	y	0.02	1	54	1	54	n	0.00	0	45	0	45	n	0.10	6	52	6	52	y	0.00	0	26	0	26	n	0.00	0	45	0	45	n	0.00	0	36	0	36	n	0.00	0	42	0	42	n	0.00	0	45	0	45	n	0.00	0	30	0	30	n	0.02	1	45	1	45	n	ENSMUSG00000031774.9	Psme3ip1	chr8	protein_coding	proteasome activator subunit 3 interacting protein 1
known_NIR_19179	chr8	95316035	95328263	-	95316035	95323679	A5SS&ES	ENSMUST00000212547.2	known	0.75	3	1	3	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	n	0.00	0	5	0	5	n	0.50	5	5	5	5	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.67	2	1	2	1	n	ENSMUSG00000031774.9	Psme3ip1	chr8	protein_coding	proteasome activator subunit 3 interacting protein 1
known_NIR_19180	chr8	95316035	95328263	-	95316035	95328125	A5SS	ENSMUST00000034226.8	known	0.07	3	41	3	41	y	0.04	1	26	1	26	n	0.04	2	54	2	54	y	0.00	0	45	0	45	n	0.09	5	52	5	52	y	0.00	0	26	0	26	n	0.00	0	45	0	45	n	0.00	0	36	0	36	n	0.02	1	42	1	42	n	0.00	0	45	0	45	n	0.03	1	30	1	30	n	0.04	2	45	2	45	y	ENSMUSG00000031774.9	Psme3ip1	chr8	protein_coding	proteasome activator subunit 3 interacting protein 1
known_NIR_19181	chr8	95316035	95328263	-	95316035	95328172	A5SS	ENSMUST00000213022.2	known	1.00	3	0	3	0	n	0.33	1	2	1	2	n	0.67	2	1	2	1	n	-	-	-	-	-	-	0.45	5	6	5	6	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.67	2	1	2	1	n	ENSMUSG00000031774.9	Psme3ip1	chr8	protein_coding	proteasome activator subunit 3 interacting protein 1
known_NIR_19182	chr8	95316035;95317916	95317801;95328125	-	95316035	95328125	cassetteExon	ENSMUST00000034226.8	known	0.01	0.5	41	1;0	41	n	0.04	1.0	26	2;0	26	n	0.04	2.0	54	3;1	54	n	0.02	1.0	45	2;0	45	n	0.05	3.0	52	4;2	52	y	0.02	0.5	26	0;1	26	n	0.00	0.0	45	0;0	45	n	0.01	0.5	36	1;0	36	n	0.01	0.5	42	1;0	42	n	0.02	1.0	45	2;0	45	n	0.00	0.0	30	0;0	30	n	0.01	0.5	45	1;0	45	n	ENSMUSG00000031774.9	Psme3ip1	chr8	protein_coding	proteasome activator subunit 3 interacting protein 1
known_NIR_19183	chr8	95316035;95323736	95323679;95328125	-	95316035	95328125	cassetteExon	ENSMUST00000034226.8	known	0.01	0.5	41	1;0	41	n	0.04	1.0	26	0;2	26	n	0.01	0.5	54	0;1	54	n	0.12	6.0	45	5;7	45	y	0.05	3.0	52	5;1	52	n	0.05	1.5	26	1;2	26	n	0.02	1.0	45	1;1	45	n	0.01	0.5	36	1;0	36	n	0.06	2.5	42	2;3	42	y	0.07	3.5	45	5;2	45	y	0.05	1.5	30	2;1	30	n	0.04	2.0	45	1;3	45	n	ENSMUSG00000031774.9	Psme3ip1	chr8	protein_coding	proteasome activator subunit 3 interacting protein 1
known_NIR_19184	chr8	95328732	95349462	+	95329058	95349462	A5SS	ENSMUST00000060389.10	known	0.26	5	14	5	14	y	0.00	0	16	0	16	n	0.07	2	26	2	26	y	0.06	2	30	2	30	y	0.06	2	32	2	32	y	0.29	4	10	4	10	y	0.15	4	23	4	23	y	0.04	1	26	1	26	n	0.11	2	16	2	16	y	0.09	3	30	3	30	y	0.13	2	13	2	13	y	0.10	3	27	3	27	y	ENSMUSG00000050079.11	Rspry1	chr8	protein_coding	ring finger and SPRY domain containing 1
known_NIR_19185	chr8	95393858	95394225	+	95393529	95394225	A5SS	ENSMUST00000034228.16	known	0.00	0	17	0	17	n	0.00	0	17	0	17	n	0.06	2	30	2	30	y	0.00	0	11	0	11	n	0.11	2	17	2	17	y	0.03	1	29	1	29	n	0.15	6	35	6	35	y	0.12	1	7	1	7	n	0.15	2	11	2	11	y	0.22	4	14	4	14	y	0.00	0	18	0	18	n	0.09	2	20	2	20	y	ENSMUSG00000031776.18	Arl2bp	chr8	protein_coding	ADP-ribosylation factor-like 2 binding protein
known_NIR_19186	chr8	95397055	95398690	+	95397055	95397923	A3SS&ES	ENSMUST00000211858.2	known	0.00	0	16	0	16	n	0.00	0	15	0	15	n	0.00	0	53	0	53	n	0.00	0	13	0	13	n	0.00	0	37	0	37	n	0.00	0	30	0	30	n	0.00	0	41	0	41	n	0.15	3	17	3	17	y	0.00	0	22	0	22	n	0.08	2	24	2	24	y	0.00	0	34	0	34	n	0.00	0	24	0	24	n	ENSMUSG00000031776.18	Arl2bp	chr8	protein_coding	ADP-ribosylation factor-like 2 binding protein
known_NIR_19187	chr8	95397055	95398690	+	95397055;95398008	95397923;95398690	ES	ENSMUST00000034228.16	known	0.00	0	19.0	0	16;22	n	0.00	0	26.0	0	15;37	n	0.00	0	59.5	0	53;66	n	0.00	0	15.0	0	13;17	n	0.00	0	36.0	0	37;35	n	0.00	0	28.5	0	30;27	n	0.00	0	46.5	0	41;52	n	0.17	3	15.0	3	17;13	y	0.00	0	26.0	0	22;30	n	0.07	2	27.5	2	24;31	y	0.00	0	30.0	0	34;26	n	0.00	0	27.0	0	24;30	n	ENSMUSG00000031776.18	Arl2bp	chr8	protein_coding	ADP-ribosylation factor-like 2 binding protein
known_NIR_19188	chr8	95551959	95554905	-	95551959	95553263	A5SS&ES	ENSMUST00000161762.4	known	0.10	5	45	5	45	y	0.09	4	39	4	39	y	0.08	6	69	6	69	y	0.12	7	53	7	53	y	0.08	6	69	6	69	y	0.00	0	26	0	26	n	0.08	7	80	7	80	y	0.03	1	32	1	32	n	0.08	5	61	5	61	y	0.19	19	83	19	83	y	0.03	3	93	3	93	y	0.11	7	57	7	57	y	ENSMUSG00000031781.15	Ciapin1	chr8	protein_coding	cytokine induced apoptosis inhibitor 1
known_NIR_19189	chr8	95551959	95554905	-	95551959;95553336	95553263;95554905	ES	ENSMUST00000162538.9	known	0.09	5	49.5	5	45;54	y	0.09	4	42.0	4	39;45	y	0.08	6	67.5	6	69;66	y	0.12	7	53.5	7	53;54	y	0.09	6	64.5	6	69;60	y	0.00	0	31.0	0	26;36	n	0.09	7	74.5	7	80;69	y	0.03	1	30.5	1	32;29	n	0.08	5	57.5	5	61;54	y	0.19	19	82.0	19	83;81	y	0.03	3	88.5	3	93;84	y	0.13	7	45.5	7	57;34	y	ENSMUSG00000031781.15	Ciapin1	chr8	protein_coding	cytokine induced apoptosis inhibitor 1
known_NIR_19190	chr8	95555858	95559143	-	95555858	95558401	5pMXE	ENSMUST00000161762.4	known	0.03	2	70	2	70	y	0.00	0	48	0	48	n	0.00	0	82	0	82	n	0.00	0	93	0	93	n	0.00	0	95	0	95	n	0.00	0	43	0	43	n	0.00	0	92	0	92	n	0.00	0	21	0	21	n	0.00	0	75	0	75	n	0.00	0	97	0	97	n	0.00	0	82	0	82	n	0.03	2	67	2	67	y	ENSMUSG00000031781.15	Ciapin1	chr8	protein_coding	cytokine induced apoptosis inhibitor 1
known_NIR_19191	chr8	95555858	95559143	-	95555858;95558553	95558401;95559143	ES	ENSMUST00000162538.9	known	0.03	2	71.5	2	70;73	y	0.00	0	56.0	0	48;64	n	0.00	0	91.0	0	82;100	n	0.00	0	94.0	0	93;95	n	0.00	0	99.0	0	95;103	n	0.00	0	43.0	0	43;43	n	0.00	0	87.0	0	92;82	n	0.00	0	29.5	0	21;38	n	0.00	0	68.0	0	75;61	n	0.00	0	94.5	0	97;92	n	0.00	0	81.0	0	82;80	n	0.03	2	58.0	2	67;49	y	ENSMUSG00000031781.15	Ciapin1	chr8	protein_coding	cytokine induced apoptosis inhibitor 1
known_NIR_19192	chr8	95559328	95564582	-	95559328	95564880	A5SS	ENSMUST00000162538.9	known	0.16	5	27	5	27	y	0.16	4	21	4	21	y	0.07	2	25	2	25	y	0.19	5	22	5	22	y	0.20	10	40	10	40	y	0.11	3	24	3	24	y	0.10	5	44	5	44	y	0.47	7	8	7	8	y	0.25	7	21	7	21	y	0.16	8	43	8	43	y	0.21	6	22	6	22	y	0.14	3	19	3	19	y	ENSMUSG00000031781.15	Ciapin1	chr8	protein_coding	cytokine induced apoptosis inhibitor 1
known_NIR_19193	chr8	95577227	95579743	+	95577227;95578583	95578479;95579743	ES	ENSMUST00000034234.15	known	0.01	4	263.0	4	267;259	y	0.02	6	243.5	6	244;243	y	0.01	3	213.0	3	221;205	y	0.02	6	269.5	6	269;270	y	0.02	9	376.0	9	392;360	y	0.01	1	177.5	1	175;180	n	0.03	11	403.0	11	379;427	y	0.01	1	175.0	1	153;197	n	0.02	6	246.5	6	219;274	y	0.02	10	442.5	10	455;430	y	0.02	8	319.0	8	323;315	y	0.01	3	372.0	3	386;358	y	ENSMUSG00000031782.16	Coq9	chr8	protein_coding	coenzyme Q9
known_NIR_19194	chr8	95577227	95579743	+	95578583	95579743	A5SS&ES	ENSMUST00000159638.8	known	0.02	4	259	4	259	y	0.02	6	243	6	243	y	0.01	3	205	3	205	y	0.02	6	270	6	270	y	0.02	9	360	9	360	y	0.01	1	180	1	180	n	0.03	11	427	11	427	y	0.01	1	197	1	197	n	0.02	6	274	6	274	y	0.02	10	430	10	430	y	0.02	8	315	8	315	y	0.01	3	358	3	358	y	ENSMUSG00000031782.16	Coq9	chr8	protein_coding	coenzyme Q9
known_NIR_19195	chr8	95577267	95578479	+	95577227	95578479	A5SS	ENSMUST00000034234.15	known	0.01	2	267	2	267	y	0.02	5	244	5	244	y	0.00	0	221	0	221	n	0.00	0	269	0	269	n	0.01	2	392	2	392	y	0.00	0	175	0	175	n	0.00	0	379	0	379	n	0.00	0	153	0	153	n	0.00	1	219	1	219	n	0.01	3	455	3	455	y	0.00	0	323	0	323	n	0.01	2	386	2	386	y	ENSMUSG00000031782.16	Coq9	chr8	protein_coding	coenzyme Q9
known_NIR_19196	chr8	95588467	95588702	+	95588467	95588810	A3SS	ENSMUST00000212124.2	known	0.00	0	106	0	106	n	0.00	0	102	0	102	n	0.02	2	112	2	112	y	0.00	0	104	0	104	n	0.00	0	123	0	123	n	0.00	0	59	0	59	n	0.00	0	120	0	120	n	0.07	5	70	5	70	y	0.00	0	92	0	92	n	0.00	0	130	0	130	n	0.00	0	78	0	78	n	0.00	0	130	0	130	n	ENSMUSG00000031783.11	Polr2c	chr8	protein_coding	polymerase (RNA) II (DNA directed) polypeptide C
known_NIR_19197	chr8	95588467;95588771	95588702;95589149	+	95588467;95588861	95588810;95589149	MXE	ENSMUST00000109521.4	known	0.00	0.0	105.0	0;0	106;104	n	0.00	0.0	99.5	0;0	102;97	n	0.01	1.0	104.0	2;0	112;96	n	0.00	0.0	106.5	0;0	104;109	n	0.00	0.0	113.5	0;0	123;104	n	0.00	0.0	55.0	0;0	59;51	n	0.00	0.0	114.5	0;0	120;109	n	0.07	4.5	61.5	5;4	70;53	y	0.00	0.0	90.5	0;0	92;89	n	0.00	0.0	125.5	0;0	130;121	n	0.00	0.0	77.5	0;0	78;77	n	0.00	0.0	129.0	0;0	130;128	n	ENSMUSG00000031783.11	Polr2c	chr8	protein_coding	polymerase (RNA) II (DNA directed) polypeptide C
known_NIR_19198	chr8	95588861	95589438	+	95588861	95589149	A3SS	ENSMUST00000212848.2	known	0.01	1	104	1	104	n	0.00	0	97	0	97	n	0.02	2	96	2	96	y	0.00	0	109	0	109	n	0.00	0	104	0	104	n	0.00	0	51	0	51	n	0.00	0	109	0	109	n	0.00	0	53	0	53	n	0.00	0	89	0	89	n	0.00	0	121	0	121	n	0.00	0	77	0	77	n	0.00	0	128	0	128	n	ENSMUSG00000031783.11	Polr2c	chr8	protein_coding	polymerase (RNA) II (DNA directed) polypeptide C
known_NIR_19199	chr8	95588861	95589438	+	95588861;95589317	95589149;95589438	ES	ENSMUST00000109521.4	known	0.01	1	102.0	1	104;100	n	0.00	0	98.5	0	97;100	n	0.02	2	101.0	2	96;106	y	0.00	0	99.5	0	109;90	n	0.00	0	106.0	0	104;108	n	0.00	0	53.5	0	51;56	n	0.00	0	104.5	0	109;100	n	0.00	0	50.0	0	53;47	n	0.00	0	87.5	0	89;86	n	0.00	0	120.5	0	121;120	n	0.00	0	88.5	0	77;100	n	0.00	0	112.5	0	128;97	n	ENSMUSG00000031783.11	Polr2c	chr8	protein_coding	polymerase (RNA) II (DNA directed) polypeptide C
known_NIR_19200	chr8	95766571	95766862	+	95766571	95766888	A3SS	ENSMUST00000051259.10	known	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.15	2	11	2	11	y	0.00	0	5	0	5	n	0.00	0	15	0	15	n	0.08	1	11	1	11	n	0.19	3	13	3	13	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.50	1	1	1	1	n	ENSMUSG00000060470.8	Adgrg3	chr8	protein_coding	adhesion G protein-coupled receptor G3
known_NIR_19201	chr8	95832452	95833121	-	95832452	95833091	A5SS	ENSMUST00000169353.3	known	0.00	0	21	0	21	n	0.00	0	22	0	22	n	0.00	0	38	0	38	n	0.10	2	18	2	18	y	0.00	0	58	0	58	n	0.00	0	21	0	21	n	0.00	0	28	0	28	n	0.00	0	22	0	22	n	0.00	0	23	0	23	n	0.00	0	40	0	40	n	0.05	2	36	2	36	y	0.00	0	31	0	31	n	ENSMUSG00000031788.15	Kifc3	chr8	protein_coding	kinesin family member C3
known_NIR_19202	chr8	95837387	95853154	-	95837387	95861345	A5SS	ENSMUST00000034240.15	known	0.93	13	1	13	1	n	1.00	10	0	10	0	n	0.55	12	10	12	10	y	0.89	17	2	17	2	y	0.70	32	14	32	14	y	0.79	11	3	11	3	y	0.76	16	5	16	5	y	0.83	20	4	20	4	y	0.76	22	7	22	7	y	0.84	26	5	26	5	y	1.00	23	0	23	0	n	0.65	13	7	13	7	y	ENSMUSG00000031788.15	Kifc3	chr8	protein_coding	kinesin family member C3
known_NIR_19203	chr8	95855962	95861345	-	95837387	95861345	A3SS	ENSMUST00000034240.15	known	0.93	14	1	14	1	n	1.00	7	0	7	0	n	0.67	20	10	20	10	y	0.94	31	2	31	2	y	0.53	16	14	16	14	y	0.73	8	3	8	3	y	0.71	12	5	12	5	y	0.67	8	4	8	4	y	0.65	13	7	13	7	y	0.71	12	5	12	5	y	1.00	13	0	13	0	n	0.50	7	7	7	7	y	ENSMUSG00000031788.15	Kifc3	chr8	protein_coding	kinesin family member C3
known_NIR_19204	chr8	95861487	95864203	-	95861487	95864543	A5SS	ENSMUST00000212424.2	known	0.50	2	2	2	2	n	0.42	5	7	5	7	y	0.60	12	8	12	8	y	0.29	5	12	5	12	y	0.26	6	17	6	17	y	0.50	5	5	5	5	y	0.58	11	8	11	8	y	0.64	9	5	9	5	y	0.45	5	6	5	6	y	0.38	5	8	5	8	y	0.24	4	13	4	13	y	0.47	7	8	7	8	y	ENSMUSG00000031788.15	Kifc3	chr8	protein_coding	kinesin family member C3
known_NIR_19205	chr8	96059074	96059996	+	96059093	96059996	A5SS	ENSMUST00000034245.16	known	0.05	1	20	1	20	n	0.08	1	12	1	12	n	0.03	1	32	1	32	n	0.05	1	21	1	21	n	0.04	2	53	2	53	y	0.00	0	13	0	13	n	0.00	0	31	0	31	n	0.00	0	15	0	15	n	0.00	0	19	0	19	n	0.05	2	38	2	38	y	0.03	1	28	1	28	n	0.00	0	19	0	19	n	ENSMUSG00000031792.16	Usb1	chr8	protein_coding	U6 snRNA biogenesis 1
known_NIR_19206	chr8	96149522	96161116	-	96149522	96151245	5pMXE	ENSMUST00000212807.2	known	0.10	6	52	6	52	y	0.12	9	63	9	63	y	0.04	2	43	2	43	y	0.13	9	60	9	60	y	0.15	12	67	12	67	y	0.12	4	28	4	28	y	0.22	20	71	20	71	y	0.11	5	42	5	42	y	0.15	10	55	10	55	y	0.10	11	96	11	96	y	0.12	10	70	10	70	y	0.13	15	98	15	98	y	ENSMUSG00000031796.8	Cfap20	chr8	protein_coding	cilia and flagella associated protein 20
known_NIR_19207	chr8	96149522	96161116	-	96149522;96151324	96151245;96161116	ES	ENSMUST00000034249.8	known	0.12	6	44.0	6	52;36	y	0.14	9	56.5	9	63;50	y	0.04	2	42.5	2	43;42	y	0.14	9	56.0	9	60;52	y	0.15	12	65.5	12	67;64	y	0.12	4	29.5	4	28;31	y	0.24	20	63.5	20	71;56	y	0.12	5	37.0	5	42;32	y	0.15	10	56.0	10	55;57	y	0.11	11	89.0	11	96;82	y	0.14	10	63.5	10	70;57	y	0.16	15	78.5	15	98;59	y	ENSMUSG00000031796.8	Cfap20	chr8	protein_coding	cilia and flagella associated protein 20
known_NIR_19208	chr8	96149522	96161116	-	96151324	96161116	A3SS	ENSMUST00000212731.2	known	0.14	6	36	6	36	y	0.15	9	50	9	50	y	0.05	2	42	2	42	y	0.15	9	52	9	52	y	0.16	12	64	12	64	y	0.11	4	31	4	31	y	0.26	20	56	20	56	y	0.14	5	32	5	32	y	0.15	10	57	10	57	y	0.12	11	82	11	82	y	0.15	10	57	10	57	y	0.20	15	59	15	59	y	ENSMUSG00000031796.8	Cfap20	chr8	protein_coding	cilia and flagella associated protein 20
known_NIR_19209	chr8	96187416	96192279	-	96187416;96188257	96188174;96192279	ES	ENSMUST00000056919.9	known	0.04	2	50.0	2	54;46	y	0.00	0	40.0	0	41;39	n	0.00	0	58.5	0	63;54	n	0.00	0	52.0	0	55;49	n	0.01	1	73.0	1	80;66	n	0.00	0	31.0	0	33;29	n	0.02	1	46.5	1	50;43	n	0.00	0	44.0	0	50;38	n	0.00	0	47.0	0	56;38	n	0.00	0	58.5	0	55;62	n	0.00	0	35.5	0	40;31	n	0.01	1	77.5	1	84;71	n	ENSMUSG00000046707.10	Csnk2a2	chr8	protein_coding	casein kinase 2, alpha prime polypeptide
known_NIR_19210	chr8	96187416	96192279	-	96188257	96192279	3pMXE	ENSMUST00000212615.2	known	0.04	2	46	2	46	y	0.00	0	39	0	39	n	0.00	0	54	0	54	n	0.00	0	49	0	49	n	0.01	1	66	1	66	n	0.00	0	29	0	29	n	0.02	1	43	1	43	n	0.00	0	38	0	38	n	0.00	0	38	0	38	n	0.00	0	62	0	62	n	0.00	0	31	0	31	n	0.01	1	71	1	71	n	ENSMUSG00000046707.10	Csnk2a2	chr8	protein_coding	casein kinase 2, alpha prime polypeptide
known_NIR_19211	chr8	96192338	96199999	-	96192338	96214193	A5SS	ENSMUST00000212616.2	known	0.86	32	5	32	5	y	0.94	33	2	33	2	y	0.94	47	3	47	3	y	0.98	49	1	49	1	n	0.95	52	3	52	3	y	0.85	22	4	22	4	y	0.92	35	3	35	3	y	0.96	27	1	27	1	n	0.87	27	4	27	4	y	0.96	50	2	50	2	y	0.94	34	2	34	2	y	0.99	66	1	66	1	n	ENSMUSG00000046707.10	Csnk2a2	chr8	protein_coding	casein kinase 2, alpha prime polypeptide
known_NIR_19212	chr8	96203941	96214193	-	96192338	96214193	A3SS	ENSMUST00000212616.2	known	0.85	29	5	29	5	y	0.94	32	2	32	2	y	0.95	62	3	62	3	y	0.98	48	1	48	1	n	0.95	61	3	61	3	y	0.87	26	4	26	4	y	0.92	36	3	36	3	y	0.96	24	1	24	1	n	0.89	32	4	32	4	y	0.96	48	2	48	2	y	0.93	25	2	25	2	y	0.98	56	1	56	1	n	ENSMUSG00000046707.10	Csnk2a2	chr8	protein_coding	casein kinase 2, alpha prime polypeptide
known_NIR_19213	chr8	96214304	96214830	-	96214304	96214972	A5SS	ENSMUST00000056919.9	known	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	22	0	22	n	0.00	0	21	0	21	n	0.00	0	40	0	40	n	0.05	1	18	1	18	n	0.07	2	27	2	27	y	0.06	1	15	1	15	n	0.00	0	18	0	18	n	0.00	0	21	0	21	n	0.05	1	21	1	21	n	0.00	0	27	0	27	n	ENSMUSG00000046707.10	Csnk2a2	chr8	protein_coding	casein kinase 2, alpha prime polypeptide
known_NIR_19214	chr8	96214304	96215031	-	96214304	96214972	A5SS	ENSMUST00000056919.9	known	0.00	0	12	0	12	n	0.07	1	13	1	13	n	0.15	4	22	4	22	y	0.00	0	21	0	21	n	0.02	1	40	1	40	n	0.00	0	18	0	18	n	0.07	2	27	2	27	y	0.00	0	15	0	15	n	0.00	0	18	0	18	n	0.00	0	21	0	21	n	0.00	0	21	0	21	n	0.00	0	27	0	27	n	ENSMUSG00000046707.10	Csnk2a2	chr8	protein_coding	casein kinase 2, alpha prime polypeptide
known_NIR_19215	chr8	96443429	96444821	+	96443429	96443549	3pMXE	ENSMUST00000126888.2	known	0.06	3	45	3	45	y	0.00	0	35	0	35	n	0.00	0	34	0	34	n	0.02	1	59	1	59	n	0.03	2	57	2	57	y	0.00	0	22	0	22	n	0.02	1	49	1	49	n	0.03	1	30	1	30	n	0.00	0	44	0	44	n	0.07	4	55	4	55	y	0.02	1	50	1	50	n	0.02	1	53	1	53	n	ENSMUSG00000031671.12	Setd6	chr8	protein_coding	SET domain containing 6
known_NIR_19216	chr8	96443606	96444549	+	96443669	96444549	A5SS	ENSMUST00000034096.6	known	0.03	1	29	1	29	n	0.15	5	29	5	29	y	0.03	1	34	1	34	n	0.03	1	37	1	37	n	0.09	4	41	4	41	y	0.00	0	13	0	13	n	0.12	5	36	5	36	y	0.16	3	16	3	16	y	0.17	4	19	4	19	y	0.15	8	47	8	47	y	0.07	3	40	3	40	y	0.02	1	52	1	52	n	ENSMUSG00000031671.12	Setd6	chr8	protein_coding	SET domain containing 6
known_NIR_19217	chr8	96443690	96444549	+	96443669	96444549	A5SS	ENSMUST00000034096.6	known	0.03	1	29	1	29	n	0.00	0	29	0	29	n	0.03	1	34	1	34	n	0.05	2	37	2	37	y	0.00	0	41	0	41	n	0.00	0	13	0	13	n	0.00	0	36	0	36	n	0.00	0	16	0	16	n	0.00	0	19	0	19	n	0.02	1	47	1	47	n	0.02	1	40	1	40	n	0.00	0	52	0	52	n	ENSMUSG00000031671.12	Setd6	chr8	protein_coding	SET domain containing 6
known_NIR_19218	chr8	96444729	96444821	+	96443429	96444821	A5SS	ENSMUST00000141900.8	known	0.95	58	3	58	3	y	1.00	76	0	76	0	n	1.00	51	0	51	0	n	0.99	72	1	72	1	n	0.97	74	2	74	2	y	1.00	24	0	24	0	n	0.99	73	1	73	1	n	0.97	31	1	31	1	n	1.00	55	0	55	0	n	0.96	103	4	103	4	y	0.99	82	1	82	1	n	0.99	82	1	82	1	n	ENSMUSG00000031671.12	Setd6	chr8	protein_coding	SET domain containing 6
known_NIR_19219	chr8	96447113	96448134	-	96447113;96447405	96447271;96448134	ES	ENSMUST00000098473.11	known	0.00	0	165.5	0	169;162	n	0.00	0	175.5	0	169;182	n	0.00	0	195.5	0	180;211	n	0.00	0	140.5	0	131;150	n	0.00	1	206.0	1	182;230	n	0.00	0	97.0	0	88;106	n	0.01	2	217.5	2	197;238	y	0.00	0	103.0	0	99;107	n	0.00	0	121.5	0	93;150	n	0.00	0	207.0	0	177;237	n	0.02	3	187.0	3	173;201	y	0.00	0	192.0	0	172;212	n	ENSMUSG00000036550.17	Cnot1	chr8	protein_coding	CCR4-NOT transcription complex, subunit 1
known_NIR_19220	chr8	96457289	96459699	-	96457289	96459720	A5SS	ENSMUST00000098473.11	known	0.30	23	54	23	54	y	0.20	10	41	10	41	y	0.25	26	77	26	77	y	0.28	26	66	26	66	y	0.26	34	95	34	95	y	0.47	19	21	19	21	y	0.39	39	62	39	62	y	0.33	26	52	26	52	y	0.24	19	59	19	59	y	0.26	31	90	31	90	y	0.20	14	56	14	56	y	0.27	32	85	32	85	y	ENSMUSG00000036550.17	Cnot1	chr8	protein_coding	CCR4-NOT transcription complex, subunit 1
known_NIR_19221	chr8	96463021	96466436	-	96463073	96466436	A3SS	ENSMUST00000098473.11	known	0.00	0	69	0	69	n	0.00	0	41	0	41	n	0.03	3	91	3	91	y	0.00	0	71	0	71	n	0.00	0	101	0	101	n	0.00	0	45	0	45	n	0.00	0	81	0	81	n	0.00	0	56	0	56	n	0.00	0	79	0	79	n	0.00	0	114	0	114	n	0.00	0	72	0	72	n	0.00	0	92	0	92	n	ENSMUSG00000036550.17	Cnot1	chr8	protein_coding	CCR4-NOT transcription complex, subunit 1
known_NIR_19222	chr8	96479778	96481608	-	96479778	96481593	A5SS	ENSMUST00000098473.11	known	0.26	7	20	7	20	y	0.60	12	8	12	8	y	0.49	25	26	25	26	y	0.35	22	40	22	40	y	0.47	26	29	26	29	y	0.44	16	20	16	20	y	0.27	7	19	7	19	y	0.31	13	29	13	29	y	0.38	14	23	14	23	y	0.37	19	32	19	32	y	0.46	17	20	17	20	y	0.34	17	33	17	33	y	ENSMUSG00000036550.17	Cnot1	chr8	protein_coding	CCR4-NOT transcription complex, subunit 1
known_NIR_19223	chr8	96481736	96482720	-	96481739	96482720	A3SS	ENSMUST00000098473.11	known	0.26	7	20	7	20	y	0.40	6	9	6	9	y	0.32	14	30	14	30	y	0.17	6	30	6	30	y	0.33	18	36	18	36	y	0.28	11	28	11	28	y	0.16	4	21	4	21	y	0.37	17	29	17	29	y	0.33	10	20	10	20	y	0.25	15	44	15	44	y	0.26	9	26	9	26	y	0.16	8	43	8	43	y	ENSMUSG00000036550.17	Cnot1	chr8	protein_coding	CCR4-NOT transcription complex, subunit 1
known_NIR_19224	chr8	96501350	96501907	-	96501356	96501907	A3SS	ENSMUST00000098473.11	known	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.05	2	37	2	37	y	0.00	0	38	0	38	n	0.00	0	46	0	46	n	0.00	0	30	0	30	n	0.00	0	25	0	25	n	0.00	0	26	0	26	n	0.00	0	17	0	17	n	0.05	2	35	2	35	y	0.00	0	16	0	16	n	0.00	0	37	0	37	n	ENSMUSG00000036550.17	Cnot1	chr8	protein_coding	CCR4-NOT transcription complex, subunit 1
known_NIR_19225	chr8	96575396	96580114	-	96575396	96579430	A5SS&ES	ENSMUST00000040481.4	known	0.18	4	18	4	18	y	0.11	2	17	2	17	y	0.14	4	24	4	24	y	0.12	3	21	3	21	y	0.11	3	25	3	25	y	0.19	3	13	3	13	y	0.19	5	21	5	21	y	0.06	1	17	1	17	n	0.09	1	10	1	10	n	0.10	2	19	2	19	y	0.04	1	23	1	23	n	0.11	3	24	3	24	y	ENSMUSG00000036534.7	Slc38a7	chr8	protein_coding	solute carrier family 38, member 7
known_NIR_19226	chr8	96575396	96580114	-	96575396;96579535	96579430;96580114	ES	ENSMUST00000212270.2	known	0.25	4	12.0	4	18;6	y	0.15	2	11.5	2	17;6	y	0.17	4	20.0	4	24;16	y	0.17	3	14.5	3	21;8	y	0.14	3	19.0	3	25;13	y	0.26	3	8.5	3	13;4	y	0.22	5	18.0	5	21;15	y	0.09	1	10.5	1	17;4	n	0.11	1	8.0	1	10;6	n	0.11	2	15.5	2	19;12	y	0.06	1	17.0	1	23;11	n	0.15	3	17.5	3	24;11	y	ENSMUSG00000036534.7	Slc38a7	chr8	protein_coding	solute carrier family 38, member 7
known_NIR_19227	chr9	100380023	100388779	-	100380023	100390482	A5SS	ENSMUST00000116522.8	known	0.04	3	73	3	73	y	0.11	4	32	4	32	y	0.14	23	136	23	136	y	0.06	3	49	3	49	y	0.12	8	61	8	61	y	0.13	8	53	8	53	y	0.08	6	71	6	71	y	0.08	5	56	5	56	y	0.07	3	41	3	41	y	0.00	0	48	0	48	n	0.08	3	33	3	33	y	0.05	3	56	3	56	y	ENSMUSG00000032475.16	Nck1	chr9	protein_coding	non-catalytic region of tyrosine kinase adaptor protein 1
known_NIR_19228	chr9	100390725	100427600	-	100390725	100428048	A5SS	ENSMUST00000116522.8	known	0.04	1	23	1	23	n	0.00	0	19	0	19	n	0.07	7	100	7	100	y	0.09	3	29	3	29	y	0.07	4	52	4	52	y	0.04	1	22	1	22	n	0.00	0	32	0	32	n	0.03	1	35	1	35	n	0.00	0	21	0	21	n	0.00	0	29	0	29	n	0.19	4	17	4	17	y	0.07	2	26	2	26	y	ENSMUSG00000032475.16	Nck1	chr9	protein_coding	non-catalytic region of tyrosine kinase adaptor protein 1
known_NIR_19229	chr9	100833834	100836274	+	100833834;100835649	100835539;100836274	ES	ENSMUST00000129269.8	known	0.25	11	33.0	11	34;32	y	0.00	0	28.5	0	26;31	n	0.16	12	62.5	12	64;61	y	0.09	4	40.0	4	38;42	y	0.12	7	49.5	7	40;59	y	0.04	1	25.0	1	20;30	n	0.14	6	37.5	6	35;40	y	0.20	7	27.5	7	26;29	y	0.10	3	26.0	3	26;26	y	0.13	6	41.5	6	41;42	y	0.11	5	39.0	5	29;49	y	0.07	3	42.0	3	43;41	y	ENSMUSG00000037286.16	Stag1	chr9	protein_coding	stromal antigen 1
known_NIR_19230	chr9	100833834	100836274	+	100835649	100836274	A5SS&ES	ENSMUST00000155108.8	known	0.26	11	32	11	32	y	0.00	0	31	0	31	n	0.16	12	61	12	61	y	0.09	4	42	4	42	y	0.11	7	59	7	59	y	0.03	1	30	1	30	n	0.13	6	40	6	40	y	0.19	7	29	7	29	y	0.10	3	26	3	26	y	0.12	6	42	6	42	y	0.09	5	49	5	49	y	0.07	3	41	3	41	y	ENSMUSG00000037286.16	Stag1	chr9	protein_coding	stromal antigen 1
known_NIR_19231	chr9	100881326;100894868	100894758;100905189	-	100881326	100905189	cassetteExon	ENSMUST00000149322.8	known	0.97	216.0	7	241;191	7	y	0.97	179.0	5	209;149	5	y	0.98	249.5	6	277;222	6	y	0.97	304.5	10	360;249	10	y	0.99	328.5	2	375;282	2	y	0.97	159.5	5	191;128	5	y	0.96	327.0	12	384;270	12	y	0.96	186.0	8	201;171	8	y	0.99	261.0	3	302;220	3	y	0.98	445.0	8	495;395	8	y	0.99	305.0	4	318;292	4	y	0.97	369.0	11	418;320	11	y	ENSMUSG00000032527.14	Pccb	chr9	protein_coding	propionyl Coenzyme A carboxylase, beta polypeptide
known_NIR_19232	chr9	100912296	100916722	-	100912296;100914028	100913909;100916722	ES	ENSMUST00000149322.8	known	0.02	4	179.0	4	161;197	y	0.04	6	137.0	6	138;136	y	0.05	10	198.5	10	192;205	y	0.01	4	285.0	4	262;308	y	0.01	4	266.5	4	249;284	y	0.07	9	128.5	9	122;135	y	0.05	13	274.5	13	289;260	y	0.01	2	153.5	2	139;168	y	0.02	3	196.5	3	235;158	y	0.01	5	355.5	5	323;388	y	0.03	6	214.5	6	229;200	y	0.01	4	313.5	4	320;307	y	ENSMUSG00000032527.14	Pccb	chr9	protein_coding	propionyl Coenzyme A carboxylase, beta polypeptide
known_NIR_19233	chr9	100957473	100977770	+	100957473;100958009	100957933;100977770	ES	ENSMUST00000189616.2	known	0.92	27	2.5	27	2;3	y	0.95	21	1.0	21	0;2	n	0.97	38	1.0	38	1;1	n	0.99	35	0.5	35	1;0	n	0.93	49	3.5	49	4;3	y	1.00	22	0.0	22	0;0	n	0.99	36	0.5	36	1;0	n	0.95	19	1.0	19	2;0	n	0.96	23	1.0	23	1;1	n	0.97	35	1.0	35	0;2	n	0.85	28	5.0	28	4;6	y	0.92	41	3.5	41	5;2	y	ENSMUSG00000066415.5	Msl2	chr9	protein_coding	MSL complex subunit 2
known_NIR_19234	chr9	101071624	101075830	-	101071624	101088330	A5SS	ENSMUST00000075941.12	known	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.09	1	10	1	10	n	0.00	0	9	0	9	n	0.15	3	17	3	17	y	0.00	0	7	0	7	n	0.13	2	13	2	13	y	0.27	3	8	3	8	y	0.17	1	5	1	5	n	0.15	2	11	2	11	y	0.08	1	12	1	12	n	0.21	3	11	3	11	y	ENSMUSG00000043154.16	Ppp2r3a	chr9	protein_coding	protein phosphatase 2, regulatory subunit B'', alpha
known_NIR_19235	chr9	102464211	102465907	-	102464211	102471707	A5SS	ENSMUST00000162655.9	known	0.00	0	20	0	20	n	0.00	0	35	0	35	n	0.07	3	39	3	39	y	0.00	0	33	0	33	n	0.03	1	33	1	33	n	0.00	0	26	0	26	n	0.00	0	53	0	53	n	0.00	0	22	0	22	n	0.00	0	27	0	27	n	0.00	0	40	0	40	n	0.02	1	40	1	40	n	0.03	1	28	1	28	n	ENSMUSG00000032534.19	Cep63	chr9	protein_coding	centrosomal protein 63
known_NIR_19236	chr9	102467732	102471707	-	102464211	102471707	A3SS	ENSMUST00000162655.9	known	0.09	2	20	2	20	y	0.00	0	35	0	35	n	0.05	2	39	2	39	y	0.00	0	33	0	33	n	0.00	0	33	0	33	n	0.00	0	26	0	26	n	0.00	0	53	0	53	n	0.08	2	22	2	22	y	0.00	0	27	0	27	n	0.02	1	40	1	40	n	0.02	1	40	1	40	n	0.03	1	28	1	28	n	ENSMUSG00000032534.19	Cep63	chr9	protein_coding	centrosomal protein 63
known_NIR_19237	chr9	102479747	102484525	-	102479747;102480274	102480041;102484525	ES	ENSMUST00000162655.9	known	0.00	0	30.0	0	24;36	n	0.00	0	35.0	0	41;29	n	0.00	0	41.0	0	41;41	n	0.00	0	26.5	0	27;26	n	0.00	0	36.5	0	33;40	n	0.00	0	28.5	0	22;35	n	0.00	0	48.0	0	51;45	n	0.00	0	29.0	0	33;25	n	0.00	0	34.5	0	38;31	n	0.00	0	46.5	0	47;46	n	0.00	0	33.0	0	34;32	n	0.05	2	39.0	2	33;45	y	ENSMUSG00000032534.19	Cep63	chr9	protein_coding	centrosomal protein 63
known_NIR_19238	chr9	102479747	102484525	-	102480274	102484525	3pMXE	ENSMUST00000213636.2	known	0.00	0	36	0	36	n	0.00	0	29	0	29	n	0.00	0	41	0	41	n	0.00	0	26	0	26	n	0.00	0	40	0	40	n	0.00	0	35	0	35	n	0.00	0	45	0	45	n	0.00	0	25	0	25	n	0.00	0	31	0	31	n	0.00	0	46	0	46	n	0.00	0	32	0	32	n	0.04	2	45	2	45	y	ENSMUSG00000032534.19	Cep63	chr9	protein_coding	centrosomal protein 63
known_NIR_19239	chr9	102496235	102496891	-	102496187	102496891	A3SS	ENSMUST00000162655.9	known	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.04	1	24	1	24	n	0.00	0	17	0	17	n	0.12	3	21	3	21	y	0.00	0	20	0	20	n	0.03	1	28	1	28	n	0.00	0	16	0	16	n	0.05	1	18	1	18	n	0.00	0	26	0	26	n	0.00	0	7	0	7	n	0.00	0	22	0	22	n	ENSMUSG00000032534.19	Cep63	chr9	protein_coding	centrosomal protein 63
known_NIR_19240	chr9	102496959	102503462	-	102496959	102498895	5pMXE	ENSMUST00000162960.8	known	0.62	5	3	5	3	n	0.44	7	9	7	9	y	0.73	11	4	11	4	y	0.58	11	8	11	8	y	0.65	15	8	15	8	y	0.50	6	6	6	6	y	0.59	13	9	13	9	y	0.62	8	5	8	5	y	0.61	11	7	11	7	y	0.80	20	5	20	5	y	0.50	4	4	4	4	n	0.56	15	12	15	12	y	ENSMUSG00000032534.19	Cep63	chr9	protein_coding	centrosomal protein 63
known_NIR_19241	chr9	102503886	102506962	+	102503545	102506962	A5SS	ENSMUST00000190279.7	known	0.16	30	160	30	160	y	0.21	40	154	40	154	y	0.19	36	153	36	153	y	0.16	34	178	34	178	y	0.18	47	214	47	214	y	0.20	27	106	27	106	y	0.21	56	217	56	217	y	0.22	28	98	28	98	y	0.12	22	159	22	159	y	0.20	60	240	60	240	y	0.17	36	181	36	181	y	0.15	31	172	31	172	y	ENSMUSG00000035048.14	Anapc13	chr9	protein_coding	anaphase promoting complex subunit 13
known_NIR_19242	chr9	102503886;102506776	102506746;102506962	+	102503886	102506962	cassetteExon	ENSMUST00000188398.7	known	0.10	3.5	30	0;7	30	n	0.08	3.5	40	0;7	40	n	0.11	4.5	36	2;7	36	y	0.12	4.5	34	0;9	34	n	0.08	4.0	47	0;8	47	n	0.16	5.0	27	0;10	27	n	0.03	1.5	56	0;3	56	n	0.08	2.5	28	0;5	28	n	0.17	4.5	22	0;9	22	n	0.08	5.0	60	1;9	60	n	0.05	2.0	36	0;4	36	n	0.07	2.5	31	0;5	31	n	ENSMUSG00000035048.14	Anapc13	chr9	protein_coding	anaphase promoting complex subunit 13
known_NIR_19243	chr9	102504117	102506962	+	102503545	102506962	A5SS	ENSMUST00000190279.7	known	0.10	18	160	18	160	y	0.12	22	154	22	154	y	0.11	19	153	19	153	y	0.03	5	178	5	178	y	0.09	21	214	21	214	y	0.09	11	106	11	106	y	0.10	25	217	25	217	y	0.14	16	98	16	98	y	0.09	15	159	15	159	y	0.09	24	240	24	240	y	0.12	25	181	25	181	y	0.11	21	172	21	172	y	ENSMUSG00000035048.14	Anapc13	chr9	protein_coding	anaphase promoting complex subunit 13
known_NIR_19244	chr9	102504117	102506962	+	102503886	102506962	A5SS	ENSMUST00000188398.7	known	0.38	18	30	18	30	y	0.35	22	40	22	40	y	0.35	19	36	19	36	y	0.13	5	34	5	34	y	0.31	21	47	21	47	y	0.29	11	27	11	27	y	0.31	25	56	25	56	y	0.36	16	28	16	28	y	0.41	15	22	15	22	y	0.29	24	60	24	60	y	0.41	25	36	25	36	y	0.40	21	31	21	31	y	ENSMUSG00000035048.14	Anapc13	chr9	protein_coding	anaphase promoting complex subunit 13
known_NIR_19245	chr9	102504117	102506962	+	102506776	102506962	A5SS&ES	ENSMUST00000038673.14	known	0.72	18	7	18	7	y	0.76	22	7	22	7	y	0.73	19	7	19	7	y	0.36	5	9	5	9	y	0.72	21	8	21	8	y	0.52	11	10	11	10	y	0.89	25	3	25	3	y	0.76	16	5	16	5	y	0.62	15	9	15	9	y	0.73	24	9	24	9	y	0.86	25	4	25	4	y	0.81	21	5	21	5	y	ENSMUSG00000035048.14	Anapc13	chr9	protein_coding	anaphase promoting complex subunit 13
known_NIR_19246	chr9	102506776	102506962	+	102503545	102506962	A5SS	ENSMUST00000190279.7	known	0.04	7	160	7	160	y	0.04	7	154	7	154	y	0.04	7	153	7	153	y	0.05	9	178	9	178	y	0.04	8	214	8	214	y	0.09	10	106	10	106	y	0.01	3	217	3	217	y	0.05	5	98	5	98	y	0.05	9	159	9	159	y	0.04	9	240	9	240	y	0.02	4	181	4	181	y	0.03	5	172	5	172	y	ENSMUSG00000035048.14	Anapc13	chr9	protein_coding	anaphase promoting complex subunit 13
known_NIR_19247	chr9	102595101	102597280	+	102594641	102597280	A5SS	ENSMUST00000153911.2	known	1.00	16	0	16	0	n	1.00	7	0	7	0	n	1.00	17	0	17	0	n	1.00	18	0	18	0	n	1.00	17	0	17	0	n	1.00	12	0	12	0	n	1.00	25	0	25	0	n	0.95	20	1	20	1	n	1.00	20	0	20	0	n	1.00	23	0	23	0	n	0.83	19	4	19	4	y	1.00	25	0	25	0	n	ENSMUSG00000032531.16	Amotl2	chr9	protein_coding	angiomotin-like 2
known_NIR_19248	chr9	102712438	102744754	+	102712438;102739194	102739073;102744754	ES	ENSMUST00000175883.8	known	0.00	0	36.5	0	24;49	n	0.00	0	39.5	0	19;60	n	0.04	2	53.0	2	44;62	y	0.00	0	62.5	0	42;83	n	0.00	0	60.5	0	47;74	n	0.00	0	43.5	0	35;52	n	0.00	0	60.0	0	46;74	n	0.03	1	37.0	1	30;44	n	0.00	0	39.5	0	28;51	n	0.00	0	63.5	0	43;84	n	0.02	1	47.0	1	29;65	n	0.02	1	61.0	1	53;69	n	ENSMUSG00000032547.13	Ryk	chr9	protein_coding	receptor-like tyrosine kinase
known_NIR_19249	chr9	102758953	102763202	+	102758953	102763193	A3SS	ENSMUST00000175883.8	known	0.38	30	48	30	48	y	0.49	42	44	42	44	y	0.39	37	59	37	59	y	0.49	41	42	41	42	y	0.40	40	60	40	60	y	0.46	23	27	23	27	y	0.49	55	58	55	58	y	0.37	19	33	19	33	y	0.46	35	41	35	41	y	0.51	48	47	48	47	y	0.40	29	44	29	44	y	0.44	48	62	48	62	y	ENSMUSG00000032547.13	Ryk	chr9	protein_coding	receptor-like tyrosine kinase
known_NIR_19250	chr9	102885914	102923884	+	102885914	102896025	3pMXE	ENSMUST00000185215.2	known	0.95	63	3	63	3	y	1.00	21	0	21	0	n	0.96	43	2	43	2	y	0.98	103	2	103	2	y	0.98	131	3	131	3	y	1.00	79	0	79	0	n	0.95	62	3	62	3	y	0.98	82	2	82	2	y	0.92	61	5	61	5	y	0.98	85	2	85	2	y	0.96	54	2	54	2	y	0.98	106	2	106	2	y	ENSMUSG00000032548.15	Slco2a1	chr9	protein_coding	solute carrier organic anion transporter family, member 2a1
known_NIR_19251	chr9	103094717	103096422	-	103094732	103096422	A3SS	ENSMUST00000112645.8	known	0.02	574	37166	574	37166	y	0.01	602	42251	602	42251	y	0.01	1399	96732	1399	96732	y	0.01	541	38188	541	38188	y	0.01	1138	77263	1138	77263	y	0.01	876	59746	876	59746	y	0.01	739	51623	739	51623	y	0.01	855	57258	855	57258	y	0.02	505	30895	505	30895	y	0.01	615	42353	615	42353	y	0.01	497	34910	497	34910	y	0.02	683	44514	683	44514	y	ENSMUSG00000032554.16	Trf	chr9	protein_coding	transferrin
known_NIR_19252	chr9	103094717	103097001	-	103094717;103096454	103096422;103097001	ES	ENSMUST00000168142.8	known	0.00	61	20671.0	61	574;40768	y	0.00	72	23053.5	72	602;45505	y	0.00	126	55133.0	126	1399;108867	y	0.00	77	21797.5	77	541;43054	y	0.00	106	44318.0	106	1138;87498	y	0.00	95	34455.0	95	876;68034	y	0.00	92	28778.0	92	739;56817	y	0.00	88	32802.0	88	855;64749	y	0.00	59	17545.5	59	505;34586	y	0.00	78	24268.0	78	615;47921	y	0.00	64	19604.5	64	497;38712	y	0.00	75	25150.5	75	683;49618	y	ENSMUSG00000032554.16	Trf	chr9	protein_coding	transferrin
known_NIR_19253	chr9	103094717	103097001	-	103096454	103097001	A3SS&ES	ENSMUST00000112645.8	known	0.00	61	40768	61	40768	y	0.00	72	45505	72	45505	y	0.00	126	108867	126	108867	y	0.00	77	43054	77	43054	y	0.00	106	87498	106	87498	y	0.00	95	68034	95	68034	y	0.00	92	56817	92	56817	y	0.00	88	64749	88	64749	y	0.00	59	34586	59	34586	y	0.00	78	47921	78	47921	y	0.00	64	38712	64	38712	y	0.00	75	49618	75	49618	y	ENSMUSG00000032554.16	Trf	chr9	protein_coding	transferrin
known_NIR_19254	chr9	103105267	103105528	-	103105267	103107373	A5SS	ENSMUST00000112645.8	known	0.00	0	27444	0	27444	n	0.00	0	24588	0	24588	n	0.00	12	88255	12	88255	y	0.00	5	40081	5	40081	y	0.00	0	64532	0	64532	n	0.00	2	50750	2	50750	y	0.00	9	40542	9	40542	y	0.00	3	56392	3	56392	y	0.00	1	24768	1	24768	n	0.00	2	35315	2	35315	y	0.00	0	24915	0	24915	n	0.00	3	37526	3	37526	y	ENSMUSG00000032554.16	Trf	chr9	protein_coding	transferrin
known_NIR_19255	chr9	103133828;103134282	103134271;103136569	-	103133828	103136569	cassetteExon	ENSMUST00000035163.10	known	0.00	0.0	1213	0;0	1213	n	0.00	0.0	1179	0;0	1179	n	0.00	2.5	1104	2;3	1104	y	0.00	0.0	1318	0;0	1318	n	0.00	2.0	1608	2;2	1608	y	0.00	0.5	814	1;0	814	n	0.00	2.0	1442	4;0	1442	n	0.00	0.0	819	0;0	819	n	0.00	0.0	1227	0;0	1227	n	0.00	0.0	1713	0;0	1713	n	0.00	0.0	1385	0;0	1385	n	0.00	0.0	1647	0;0	1647	n	ENSMUSG00000033688.11	1300017J02Rik	chr9	protein_coding	RIKEN cDNA 1300017J02 gene
known_NIR_19256	chr9	103149517	103149686	-	103146982	103149686	A3SS	ENSMUST00000035163.10	known	0.00	0	1011	0	1011	n	0.00	0	854	0	854	n	0.00	0	1067	0	1067	n	0.00	3	1362	3	1362	y	0.00	1	1565	1	1565	n	0.00	2	690	2	690	y	0.00	0	1251	0	1251	n	0.00	0	912	0	912	n	0.00	0	1176	0	1176	n	0.00	0	1587	0	1587	n	0.00	0	1161	0	1161	n	0.00	0	1564	0	1564	n	ENSMUSG00000033688.11	1300017J02Rik	chr9	protein_coding	RIKEN cDNA 1300017J02 gene
known_NIR_19257	chr9	103159866	103181993	-	103159866	103165380	5pMXE	ENSMUST00000035163.10	known	0.00	0	688	0	688	n	0.00	0	508	0	508	n	0.00	4	879	4	879	y	0.00	0	1157	0	1157	n	0.00	0	1270	0	1270	n	0.00	0	576	0	576	n	0.00	0	965	0	965	n	0.00	0	719	0	719	n	0.00	0	829	0	829	n	0.00	0	1221	0	1221	n	0.00	0	756	0	756	n	0.00	0	1331	0	1331	n	ENSMUSG00000033688.11	1300017J02Rik	chr9	protein_coding	RIKEN cDNA 1300017J02 gene
known_NIR_19258	chr9	103211378	103213263	+	103211378;103213157	103213011;103213263	ES	ENSMUST00000035164.10	known	0.00	0	2.5	0	2;3	n	0.00	0	9.5	0	8;11	n	0.10	1	9.5	1	11;8	n	0.11	1	8.5	1	11;6	n	0.17	2	9.5	2	11;8	y	0.00	0	5.5	0	8;3	n	0.29	2	5.0	2	3;7	y	0.00	0	6.5	0	4;9	n	0.00	0	10.5	0	11;10	n	0.32	3	6.5	3	8;5	y	0.22	2	7.0	2	3;11	y	0.08	1	11.0	1	12;10	n	ENSMUSG00000032555.11	Topbp1	chr9	protein_coding	topoisomerase (DNA) II binding protein 1
known_NIR_19259	chr9	103233225	103233479	-	103232512	103233479	A3SS	ENSMUST00000035484.11	known	0.54	14	12	14	12	y	0.86	24	4	24	4	y	0.69	42	19	42	19	y	0.57	20	15	20	15	y	0.68	27	13	27	13	y	0.72	13	5	13	5	y	0.80	36	9	36	9	y	0.62	10	6	10	6	y	0.62	13	8	13	8	y	0.61	31	20	31	20	y	0.57	8	6	8	6	y	0.54	15	13	15	13	y	ENSMUSG00000032803.16	Cdv3	chr9	protein_coding	carnitine deficiency-associated gene expressed in ventricle 3
known_NIR_19260	chr9	103233225	103233479	-	103233228	103233479	A3SS	ENSMUST00000116517.9	known	0.09	14	136	14	136	y	0.17	24	114	24	114	y	0.16	42	214	42	214	y	0.10	20	172	20	172	y	0.12	27	191	27	191	y	0.10	13	116	13	116	y	0.14	36	222	36	222	y	0.07	10	132	10	132	y	0.09	13	129	13	129	y	0.14	31	190	31	190	y	0.06	8	127	8	127	y	0.08	15	184	15	184	y	ENSMUSG00000032803.16	Cdv3	chr9	protein_coding	carnitine deficiency-associated gene expressed in ventricle 3
known_NIR_19261	chr9	103233228	103233479	-	103232512	103233479	A3SS	ENSMUST00000035484.11	known	0.92	136	12	136	12	y	0.97	114	4	114	4	y	0.92	214	19	214	19	y	0.92	172	15	172	15	y	0.94	191	13	191	13	y	0.96	116	5	116	5	y	0.96	222	9	222	9	y	0.96	132	6	132	6	y	0.94	129	8	129	8	y	0.90	190	20	190	20	y	0.95	127	6	127	6	y	0.93	184	13	184	13	y	ENSMUSG00000032803.16	Cdv3	chr9	protein_coding	carnitine deficiency-associated gene expressed in ventricle 3
known_NIR_19262	chr9	103233632	103237075	-	103233638	103237075	A3SS	ENSMUST00000035484.11	known	0.12	18	136	18	136	y	0.08	11	121	11	121	y	0.15	41	235	41	235	y	0.12	26	199	26	199	y	0.14	36	222	36	222	y	0.08	13	142	13	142	y	0.09	19	182	19	182	y	0.10	14	125	14	125	y	0.12	16	121	16	121	y	0.12	29	203	29	203	y	0.09	17	163	17	163	y	0.12	25	180	25	180	y	ENSMUSG00000032803.16	Cdv3	chr9	protein_coding	carnitine deficiency-associated gene expressed in ventricle 3
known_NIR_19263	chr9	103241250	103241662	-	103241250	103242253	A5SS	ENSMUST00000035484.11	known	0.10	12	106	12	106	y	0.11	13	105	13	105	y	0.08	20	239	20	239	y	0.16	28	148	28	148	y	0.10	21	196	21	196	y	0.05	5	96	5	96	y	0.09	12	127	12	127	y	0.08	10	119	10	119	y	0.11	10	83	10	83	y	0.17	34	169	34	169	y	0.13	15	97	15	97	y	0.11	18	146	18	146	y	ENSMUSG00000032803.16	Cdv3	chr9	protein_coding	carnitine deficiency-associated gene expressed in ventricle 3
known_NIR_19264	chr9	103924885	103926489	-	103924885	103926433	A5SS	ENSMUST00000035166.12	known	0.00	0	128	0	128	n	0.00	0	120	0	120	n	0.00	0	349	0	349	n	0.00	0	112	0	112	n	0.01	2	154	2	154	y	0.00	0	191	0	191	n	0.00	0	132	0	132	n	0.00	0	136	0	136	n	0.00	0	80	0	80	n	0.00	0	158	0	158	n	0.00	0	152	0	152	n	0.00	0	110	0	110	n	ENSMUSG00000032557.14	Uba5	chr9	protein_coding	ubiquitin-like modifier activating enzyme 5
known_NIR_19265	chr9	103926878	103927034	-	103926800	103927034	A3SS	ENSMUST00000035166.12	known	0.04	5	111	5	111	y	0.05	5	88	5	88	y	0.03	7	230	7	230	y	0.03	3	87	3	87	y	0.01	2	164	2	164	y	0.02	3	193	3	193	y	0.02	2	119	2	119	y	0.02	3	142	3	142	y	0.05	3	60	3	60	y	0.03	4	120	4	120	y	0.03	3	101	3	101	y	0.03	3	97	3	97	y	ENSMUSG00000032557.14	Uba5	chr9	protein_coding	ubiquitin-like modifier activating enzyme 5
known_NIR_19266	chr9	103934182	103937358	-	103934182	103937417	A5SS	ENSMUST00000035166.12	known	0.02	1	45	1	45	n	0.05	2	35	2	35	y	0.00	0	158	0	158	n	0.00	0	46	0	46	n	0.00	0	72	0	72	n	0.00	0	108	0	108	n	0.00	0	51	0	51	n	0.01	1	84	1	84	n	0.00	0	40	0	40	n	0.00	0	73	0	73	n	0.00	0	37	0	37	n	0.00	0	52	0	52	n	ENSMUSG00000032557.14	Uba5	chr9	protein_coding	ubiquitin-like modifier activating enzyme 5
known_NIR_19267	chr9	103934182	103937422	-	103934182	103937417	A5SS	ENSMUST00000035166.12	known	0.00	0	45	0	45	n	0.00	0	35	0	35	n	0.00	0	158	0	158	n	0.00	0	46	0	46	n	0.00	0	72	0	72	n	0.02	2	108	2	108	y	0.00	0	51	0	51	n	0.00	0	84	0	84	n	0.00	0	40	0	40	n	0.00	0	73	0	73	n	0.03	1	37	1	37	n	0.00	0	52	0	52	n	ENSMUSG00000032557.14	Uba5	chr9	protein_coding	ubiquitin-like modifier activating enzyme 5
known_NIR_19268	chr9	103968472	103968791	+	103967534	103968791	A5SS	ENSMUST00000120854.8	known	0.00	0	325	0	325	n	0.01	3	269	3	269	y	0.00	0	409	0	409	n	0.00	0	535	0	535	n	0.00	0	598	0	598	n	0.00	0	256	0	256	n	0.00	0	553	0	553	n	0.00	0	314	0	314	n	0.00	0	318	0	318	n	0.00	0	563	0	563	n	0.00	0	351	0	351	n	0.00	0	442	0	442	n	ENSMUSG00000090150.11	Acad11	chr9	protein_coding	acyl-Coenzyme A dehydrogenase family, member 11
known_NIR_19269	chr9	103974651	103984825	+	103974651	103990661	A3SS	ENSMUST00000120854.8	known	0.02	7	347	7	347	y	0.04	11	289	11	289	y	0.04	16	419	16	419	y	0.02	11	559	11	559	y	0.03	17	625	17	625	y	0.04	11	258	11	258	y	0.01	8	581	8	581	y	0.05	19	360	19	360	y	0.02	5	328	5	328	y	0.01	7	610	7	610	y	0.03	12	436	12	436	y	0.02	9	462	9	462	y	ENSMUSG00000090150.11	Acad11	chr9	protein_coding	acyl-Coenzyme A dehydrogenase family, member 11
known_NIR_19270	chr9	104039612	104039846	-	104039612	104039854	A5SS	ENSMUST00000035170.13	known	0.02	1	48	1	48	n	0.05	2	38	2	38	y	0.00	0	57	0	57	n	0.03	2	56	2	56	y	0.00	0	58	0	58	n	0.03	1	32	1	32	n	0.00	0	53	0	53	n	0.03	1	36	1	36	n	0.03	1	36	1	36	n	0.02	1	49	1	49	n	0.00	0	38	0	38	n	0.00	0	68	0	68	n	ENSMUSG00000032560.15	Dnajc13	chr9	protein_coding	DnaJ heat shock protein family (Hsp40) member C13
known_NIR_19271	chr9	104086586;104087082	104087068;104089960	-	104086586	104089960	cassetteExon	ENSMUST00000035170.13	known	0.00	0.0	8	0;0	8	n	0.00	0.0	10	0;0	10	n	0.00	0.0	36	0;0	36	n	0.00	0.0	17	0;0	17	n	0.00	0.0	27	0;0	27	n	0.00	0.0	14	0;0	14	n	0.11	2.0	17	2;2	17	y	0.00	0.0	11	0;0	11	n	0.00	0.0	7	0;0	7	n	0.00	0.0	24	0;0	24	n	0.00	0.0	12	0;0	12	n	0.00	0.0	11	0;0	11	n	ENSMUSG00000032560.15	Dnajc13	chr9	protein_coding	DnaJ heat shock protein family (Hsp40) member C13
known_NIR_19272	chr9	104177667	104178015	-	104168728	104178015	A3SS	ENSMUST00000062723.14	known	0.18	3	14	3	14	y	0.64	7	4	7	4	y	0.46	49	57	49	57	y	0.32	7	15	7	15	y	0.22	9	32	9	32	y	0.41	24	35	24	35	y	0.37	11	19	11	19	y	0.37	20	34	20	34	y	0.00	0	17	0	17	n	0.31	4	9	4	9	y	0.00	0	9	0	9	n	0.20	2	8	2	8	y	ENSMUSG00000032561.16	Acpp	chr9	protein_coding	acid phosphatase, prostate
known_NIR_19273	chr9	104930711	104931624	+	104930711	104931620	A3SS	ENSMUST00000149243.8	known	0.00	0	28	0	28	n	0.00	0	12	0	12	n	0.00	0	22	0	22	n	0.00	0	33	0	33	n	0.00	0	34	0	34	n	0.00	0	12	0	12	n	0.09	4	39	4	39	y	0.00	0	15	0	15	n	0.00	0	24	0	24	n	0.00	0	38	0	38	n	0.00	0	36	0	36	n	0.00	0	40	0	40	n	ENSMUSG00000032563.17	Mrpl3	chr9	protein_coding	mitochondrial ribosomal protein L3
known_NIR_19274	chr9	104930711	104931644	+	104930711	104931620	A3SS	ENSMUST00000149243.8	known	0.12	4	28	4	28	y	0.00	0	12	0	12	n	0.24	7	22	7	22	y	0.00	0	33	0	33	n	0.06	2	34	2	34	y	0.00	0	12	0	12	n	0.00	0	39	0	39	n	0.00	0	15	0	15	n	0.14	4	24	4	24	y	0.00	0	38	0	38	n	0.08	3	36	3	36	y	0.00	0	40	0	40	n	ENSMUSG00000032563.17	Mrpl3	chr9	protein_coding	mitochondrial ribosomal protein L3
known_NIR_19275	chr9	104930711	104931714	+	104930711	104931620	A3SS	ENSMUST00000149243.8	known	0.03	1	28	1	28	n	0.00	0	12	0	12	n	0.00	0	22	0	22	n	0.00	0	33	0	33	n	0.00	0	34	0	34	n	0.14	2	12	2	12	y	0.00	0	39	0	39	n	0.00	0	15	0	15	n	0.04	1	24	1	24	n	0.03	1	38	1	38	n	0.00	0	36	0	36	n	0.00	0	40	0	40	n	ENSMUSG00000032563.17	Mrpl3	chr9	protein_coding	mitochondrial ribosomal protein L3
known_NIR_19276	chr9	105278885;105279975	105279917;105280595	+	105278885	105280595	cassetteExon	ENSMUST00000035181.10	known	0.33	1.5	3	3;0	3	n	1.00	3.5	0	3;4	0	n	0.10	1.5	13	2;1	13	n	0.29	2.0	5	2;2	5	n	0.38	2.5	4	3;2	4	n	0.00	0.0	3	0;0	3	n	0.56	2.5	2	2;3	2	n	0.71	2.5	1	3;2	1	n	0.00	0.0	3	0;0	3	n	0.47	3.5	4	5;2	4	y	0.50	1.0	1	1;1	1	n	0.60	3.0	2	4;2	2	n	ENSMUSG00000032567.17	Aste1	chr9	protein_coding	asteroid homolog 1
known_NIR_19277	chr9	105326087	105328992	-	105326087	105329003	A5SS	ENSMUST00000177293.8	known	0.00	0	41	0	41	n	0.00	0	30	0	30	n	0.00	0	68	0	68	n	0.00	0	30	0	30	n	0.00	0	66	0	66	n	0.00	0	18	0	18	n	0.03	2	57	2	57	y	0.00	0	18	0	18	n	0.06	2	34	2	34	y	0.00	0	61	0	61	n	0.00	0	21	0	21	n	0.02	1	47	1	47	n	ENSMUSG00000032570.18	Atp2c1	chr9	protein_coding	ATPase, Ca++-sequestering
known_NIR_19278	chr9	105347346	105371614	-	105347346	105398239	A5SS	ENSMUST00000176770.8	known	1.00	43	0	43	0	n	0.89	17	2	17	2	y	1.00	52	0	52	0	n	1.00	51	0	51	0	n	0.97	59	2	59	2	y	1.00	31	0	31	0	n	0.93	41	3	41	3	y	1.00	45	0	45	0	n	1.00	18	0	18	0	n	1.00	41	0	41	0	n	1.00	34	0	34	0	n	1.00	35	0	35	0	n	ENSMUSG00000032570.18	Atp2c1	chr9	protein_coding	ATPase, Ca++-sequestering
known_NIR_19279	chr9	105347346	105372092	-	105347346	105371614	5pMXE	ENSMUST00000177074.8	known	0.04	2	43	2	43	y	0.00	0	17	0	17	n	0.09	5	52	5	52	y	0.04	2	51	2	51	y	0.06	4	59	4	59	y	0.00	0	31	0	31	n	0.00	0	41	0	41	n	0.04	2	45	2	45	y	0.05	1	18	1	18	n	0.00	0	41	0	41	n	0.06	2	34	2	34	y	0.03	1	35	1	35	n	ENSMUSG00000032570.18	Atp2c1	chr9	protein_coding	ATPase, Ca++-sequestering
known_NIR_19280	chr9	105347346	105372092	-	105347346;105371796	105371614;105372092	ES	ENSMUST00000038118.15	known	0.07	2	26.5	2	43;10	y	0.00	0	12.5	0	17;8	n	0.11	5	39.5	5	52;27	y	0.05	2	37.5	2	51;24	y	0.08	4	44.5	4	59;30	y	0.00	0	25.5	0	31;20	n	0.00	0	33.5	0	41;26	n	0.05	2	35.0	2	45;25	y	0.07	1	13.0	1	18;8	n	0.00	0	33.5	0	41;26	n	0.08	2	24.5	2	34;15	y	0.04	1	27.5	1	35;20	n	ENSMUSG00000032570.18	Atp2c1	chr9	protein_coding	ATPase, Ca++-sequestering
known_NIR_19281	chr9	105347346;105370753	105370742;105371614	-	105347346	105371614	cassetteExon	ENSMUST00000177074.8	known	0.00	0.0	43	0;0	43	n	0.15	3.0	17	3;3	17	y	0.05	2.5	52	3;2	52	y	0.01	0.5	51	0;1	51	n	0.02	1.5	59	1;2	59	n	0.00	0.0	31	0;0	31	n	0.08	3.5	41	4;3	41	y	0.04	2.0	45	2;2	45	y	0.00	0.0	18	0;0	18	n	0.11	5.0	41	5;5	41	y	0.03	1.0	34	1;1	34	n	0.08	3.0	35	3;3	35	y	ENSMUSG00000032570.18	Atp2c1	chr9	protein_coding	ATPase, Ca++-sequestering
known_NIR_19282	chr9	106035103	106035199	-	106035103	106035240	A5SS	ENSMUST00000112543.9	known	0.63	83	49	83	49	y	0.48	42	45	42	45	y	0.51	85	81	85	81	y	0.56	100	80	100	80	y	0.57	141	107	141	107	y	0.54	99	86	99	86	y	0.50	101	103	101	103	y	0.53	94	82	94	82	y	0.51	50	48	50	48	y	0.45	83	103	83	103	y	0.46	68	80	68	80	y	0.47	71	80	71	80	y	ENSMUSG00000020258.17	Glyctk	chr9	protein_coding	glycerate kinase
known_NIR_19283	chr9	106035103	106035250	-	106035103	106035199	A5SS	ENSMUST00000162562.2	known	0.08	7	83	7	83	y	0.21	11	42	11	42	y	0.23	26	85	26	85	y	0.14	16	100	16	100	y	0.12	19	141	19	141	y	0.17	21	99	21	99	y	0.11	13	101	13	101	y	0.24	29	94	29	94	y	0.22	14	50	14	50	y	0.16	16	83	16	83	y	0.20	17	68	17	68	y	0.15	13	71	13	71	y	ENSMUSG00000020258.17	Glyctk	chr9	protein_coding	glycerate kinase
known_NIR_19284	chr9	106035103	106035250	-	106035103	106035240	A5SS	ENSMUST00000112543.9	known	0.12	7	49	7	49	y	0.20	11	45	11	45	y	0.24	26	81	26	81	y	0.17	16	80	16	80	y	0.15	19	107	19	107	y	0.20	21	86	21	86	y	0.11	13	103	13	103	y	0.26	29	82	29	82	y	0.23	14	48	14	48	y	0.13	16	103	16	103	y	0.18	17	80	17	80	y	0.14	13	80	13	80	y	ENSMUSG00000020258.17	Glyctk	chr9	protein_coding	glycerate kinase
known_NIR_19285	chr9	106057831	106061379	+	106057831;106060914	106060815;106061379	ES	ENSMUST00000020490.13	known	0.12	8	61.5	8	56;67	y	0.20	7	28.0	7	27;29	y	0.08	6	69.0	6	64;74	y	0.00	0	61.5	0	52;71	n	0.03	2	68.5	2	60;77	y	0.11	4	32.5	4	25;40	y	0.01	1	67.0	1	53;81	n	0.06	3	49.0	3	50;48	y	0.06	2	31.0	2	27;35	y	0.06	5	82.0	5	71;93	y	0.03	1	28.5	1	26;31	n	0.04	2	54.0	2	39;69	y	ENSMUSG00000020257.14	Wdr82	chr9	protein_coding	WD repeat domain containing 82
known_NIR_19286	chr9	106073356	106073792	-	106073356;106073630	106073567;106073792	ES	ENSMUST00000136431.2	known	0.05	3	55.5	3	56;55	y	0.00	0	56.0	0	58;54	n	0.00	0	45.0	0	53;37	n	0.00	0	49.0	0	55;43	n	0.00	0	74.0	0	75;73	n	0.03	1	33.0	1	32;34	n	0.02	1	61.0	1	52;70	n	0.00	0	41.0	0	36;46	n	0.00	0	51.0	0	50;52	n	0.00	0	78.0	0	81;75	n	0.00	0	53.5	0	54;53	n	0.00	0	41.0	0	41;41	n	ENSMUSG00000020253.16	Ppm1m	chr9	protein_coding	protein phosphatase 1M
known_NIR_19287	chr9	106113907	106115168	-	106113907	106115274	A5SS	ENSMUST00000112524.9	known	0.00	4	1830	4	1830	y	0.00	6	1835	6	1835	y	0.00	1	435	1	435	n	0.00	4	1101	4	1101	y	0.00	1	1186	1	1186	n	0.00	0	332	0	332	n	0.00	3	1332	3	1332	y	0.01	2	251	2	251	y	0.00	0	475	0	475	n	0.01	8	1482	8	1482	y	0.01	7	1302	7	1302	y	0.00	6	1261	6	1261	y	ENSMUSG00000032786.17	Alas1	chr9	protein_coding	aminolevulinic acid synthase 1
known_NIR_19288	chr9	106115435	106115842	-	106115438	106115842	A3SS	ENSMUST00000112524.9	known	0.02	34	1886	34	1886	y	0.00	0	2118	0	2118	n	0.03	15	541	15	541	y	0.02	27	1283	27	1283	y	0.00	0	1221	0	1221	n	0.00	0	321	0	321	n	0.02	34	1526	34	1526	y	0.00	0	278	0	278	n	0.01	9	593	9	593	y	0.02	31	1745	31	1745	y	0.02	30	1324	30	1324	y	0.02	29	1534	29	1534	y	ENSMUSG00000032786.17	Alas1	chr9	protein_coding	aminolevulinic acid synthase 1
known_NIR_19289	chr9	106116915	106118835	-	106116915	106118315	A5SS	ENSMUST00000214249.2	known	0.00	0	1676	0	1676	n	0.00	0	1498	0	1498	n	0.00	0	421	0	421	n	0.00	0	1068	0	1068	n	0.00	0	921	0	921	n	0.00	0	285	0	285	n	0.00	0	1144	0	1144	n	0.00	0	220	0	220	n	0.00	0	453	0	453	n	0.00	1	1353	1	1353	n	0.00	2	1028	2	1028	y	0.00	0	1367	0	1367	n	ENSMUSG00000032786.17	Alas1	chr9	protein_coding	aminolevulinic acid synthase 1
known_NIR_19290	chr9	106116915	106118835	-	106116915;106118537	106118315;106118835	ES	ENSMUST00000112524.9	known	0.00	0	1504.5	0	1676;1333	n	0.00	0	1374.5	0	1498;1251	n	0.00	0	389.5	0	421;358	n	0.00	0	1051.0	0	1068;1034	n	0.00	0	870.0	0	921;819	n	0.00	0	264.5	0	285;244	n	0.00	0	1065.0	0	1144;986	n	0.00	0	218.5	0	220;217	n	0.00	0	440.5	0	453;428	n	0.00	1	1287.5	1	1353;1222	n	0.00	2	960.5	2	1028;893	y	0.00	0	1240.0	0	1367;1113	n	ENSMUSG00000032786.17	Alas1	chr9	protein_coding	aminolevulinic acid synthase 1
known_NIR_19291	chr9	106116915	106118835	-	106118537	106118835	3pMXE	ENSMUST00000219340.2	known	0.00	0	1333	0	1333	n	0.00	0	1251	0	1251	n	0.00	0	358	0	358	n	0.00	0	1034	0	1034	n	0.00	0	819	0	819	n	0.00	0	244	0	244	n	0.00	0	986	0	986	n	0.00	0	217	0	217	n	0.00	0	428	0	428	n	0.00	1	1222	1	1222	n	0.00	2	893	2	893	y	0.00	0	1113	0	1113	n	ENSMUSG00000032786.17	Alas1	chr9	protein_coding	aminolevulinic acid synthase 1
known_NIR_19292	chr9	106120591	106123958	-	106120594	106123958	A3SS	ENSMUST00000112524.9	known	0.01	14	1225	14	1225	y	0.01	8	1030	8	1030	y	0.01	2	347	2	347	y	0.01	5	933	5	933	y	0.00	0	794	0	794	n	0.00	0	222	0	222	n	0.00	2	836	2	836	y	0.00	0	205	0	205	n	0.01	3	364	3	364	y	0.01	6	1179	6	1179	y	0.00	1	827	1	827	n	0.01	7	1057	7	1057	y	ENSMUSG00000032786.17	Alas1	chr9	protein_coding	aminolevulinic acid synthase 1
known_NIR_19293	chr9	106124177	106124984	-	106124177	106124373	5pMXE	ENSMUST00000112524.9	known	1.00	907	2	907	2	y	1.00	777	3	777	3	y	1.00	312	0	312	0	n	1.00	790	1	790	1	n	1.00	675	0	675	0	n	0.99	210	2	210	2	y	1.00	632	3	632	3	y	1.00	175	0	175	0	n	0.99	340	5	340	5	y	0.99	912	5	912	5	y	0.99	580	4	580	4	y	1.00	855	0	855	0	n	ENSMUSG00000032786.17	Alas1	chr9	protein_coding	aminolevulinic acid synthase 1
known_NIR_19294	chr9	106185232	106207100	+	106185232	106207072	A3SS	ENSMUST00000072206.14	known	0.40	4	6	4	6	y	0.25	1	3	1	3	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.10	1	9	1	9	n	0.09	1	10	1	10	n	ENSMUSG00000023345.18	Poc1a	chr9	protein_coding	POC1 centriolar protein A
known_NIR_19295	chr9	106306775	106307175	+	106306775	106307169	A3SS	ENSMUST00000150576.8	known	0.01	3	549	3	549	y	0.01	5	491	5	491	y	0.01	4	728	4	728	y	0.00	2	489	2	489	y	0.00	1	735	1	735	n	0.01	3	452	3	452	y	0.00	2	691	2	691	y	0.01	2	386	2	386	y	0.00	1	414	1	414	n	0.00	1	624	1	624	n	0.00	1	553	1	553	n	0.00	0	552	0	552	n	ENSMUSG00000048758.15	Rpl29	chr9	protein_coding	ribosomal protein L29
known_NIR_19296	chr9	106306838	106307169	+	106306775	106307169	A5SS	ENSMUST00000150576.8	known	0.16	107	549	107	549	y	0.12	70	491	70	491	y	0.15	133	728	133	728	y	0.16	95	489	95	489	y	0.15	133	735	133	735	y	0.14	72	452	72	452	y	0.16	133	691	133	691	y	0.16	74	386	74	386	y	0.21	110	414	110	414	y	0.17	126	624	126	624	y	0.20	136	553	136	553	y	0.16	108	552	108	552	y	ENSMUSG00000048758.15	Rpl29	chr9	protein_coding	ribosomal protein L29
known_NIR_19297	chr9	106307012	106307169	+	106306775	106307169	A5SS	ENSMUST00000150576.8	known	0.01	3	549	3	549	y	0.00	2	491	2	491	y	0.01	10	728	10	728	y	0.00	2	489	2	489	y	0.01	6	735	6	735	y	0.00	1	452	1	452	n	0.00	2	691	2	691	y	0.01	2	386	2	386	y	0.00	2	414	2	414	y	0.00	1	624	1	624	n	0.00	2	553	2	553	y	0.00	2	552	2	552	y	ENSMUSG00000048758.15	Rpl29	chr9	protein_coding	ribosomal protein L29
known_NIR_19298	chr9	106307012	106307169	+	106306838	106307169	A5SS	ENSMUST00000059802.7	known	0.03	3	107	3	107	y	0.03	2	70	2	70	y	0.07	10	133	10	133	y	0.02	2	95	2	95	y	0.04	6	133	6	133	y	0.01	1	72	1	72	n	0.01	2	133	2	133	y	0.03	2	74	2	74	y	0.02	2	110	2	110	y	0.01	1	126	1	126	n	0.01	2	136	2	136	y	0.02	2	108	2	108	y	ENSMUSG00000048758.15	Rpl29	chr9	protein_coding	ribosomal protein L29
known_NIR_19299	chr9	106313208	106313325	-	106313059	106313325	A3SS	ENSMUST00000190851.3	known	0.00	0	86	0	86	n	0.00	0	75	0	75	n	0.03	1	29	1	29	n	0.00	0	94	0	94	n	0.01	1	87	1	87	n	0.00	0	24	0	24	n	0.00	0	114	0	114	n	0.00	0	34	0	34	n	0.00	0	70	0	70	n	0.02	3	141	3	141	y	0.00	0	98	0	98	n	0.01	2	148	2	148	y	ENSMUSG00000023262.14	Acy1	chr9	protein_coding	aminoacylase 1
known_NIR_19300	chr9	106313419	106314088	-	106313419;106313999	106313895;106314088	ES	ENSMUST00000190851.3	known	0.05	3	56.5	3	58;55	y	0.00	0	59.0	0	47;71	n	0.00	0	22.0	0	18;26	n	0.00	0	87.0	0	104;70	n	0.02	2	88.5	2	92;85	y	0.09	1	10.5	1	9;12	n	0.00	0	91.5	0	109;74	n	0.03	1	37.0	1	32;42	n	0.00	0	63.5	0	63;64	n	0.00	0	111.0	0	117;105	n	0.04	3	73.5	3	87;60	y	0.02	2	112.5	2	128;97	y	ENSMUSG00000023262.14	Acy1	chr9	protein_coding	aminoacylase 1
known_NIR_19301	chr9	106313419	106314088	-	106313999	106314088	A3SS	ENSMUST00000189097.7	known	0.05	3	55	3	55	y	0.00	0	71	0	71	n	0.00	0	26	0	26	n	0.00	0	70	0	70	n	0.02	2	85	2	85	y	0.08	1	12	1	12	n	0.00	0	74	0	74	n	0.02	1	42	1	42	n	0.00	0	64	0	64	n	0.00	0	105	0	105	n	0.05	3	60	3	60	y	0.02	2	97	2	97	y	ENSMUSG00000023262.14	Acy1	chr9	protein_coding	aminoacylase 1
known_NIR_19302	chr9	106314936	106315332	-	106314932	106315332	A3SS	ENSMUST00000190851.3	known	0.58	35	25	35	25	y	0.53	25	22	25	22	y	0.56	15	12	15	12	y	0.47	38	42	38	42	y	0.50	37	37	37	37	y	0.71	17	7	17	7	y	0.59	41	28	41	28	y	0.69	24	11	24	11	y	0.56	29	23	29	23	y	0.57	46	35	46	35	y	0.56	30	24	30	24	y	0.44	36	46	36	46	y	ENSMUSG00000023262.14	Acy1	chr9	protein_coding	aminoacylase 1
known_NIR_19303	chr9	106318055	106321005	-	106318055	106321026	A5SS	ENSMUST00000048685.13	known	0.03	1	39	1	39	n	0.07	2	26	2	26	y	0.33	5	10	5	10	y	0.00	0	22	0	22	n	0.18	9	42	9	42	y	0.00	0	11	0	11	n	0.13	5	33	5	33	y	0.00	0	13	0	13	n	0.00	0	31	0	31	n	0.06	2	31	2	31	y	0.10	3	27	3	27	y	0.19	6	25	6	25	y	ENSMUSG00000042210.18	Abhd14a	chr9	protein_coding	abhydrolase domain containing 14A
known_NIR_19304	chr9	106318109	106321026	-	106318055	106321026	A3SS	ENSMUST00000048685.13	known	0.07	3	39	3	39	y	0.00	0	26	0	26	n	0.29	4	10	4	10	y	0.04	1	22	1	22	n	0.09	4	42	4	42	y	0.15	2	11	2	11	y	0.21	9	33	9	33	y	0.13	2	13	2	13	y	0.09	3	31	3	31	y	0.06	2	31	2	31	y	0.21	7	27	7	27	y	0.14	4	25	4	25	y	ENSMUSG00000042210.18	Abhd14a	chr9	protein_coding	abhydrolase domain containing 14A
known_NIR_19305	chr9	106321505	106324730	-	106321505;106323033	106322725;106324730	ES	ENSMUST00000171678.9	known	0.00	0	13.0	0	20;6	n	0.19	4	17.0	4	26;8	y	0.21	3	11.0	3	15;7	y	0.11	2	17.0	2	23;11	y	0.18	7	32.0	7	50;14	y	0.20	2	8.0	2	12;4	y	0.25	9	27.5	9	47;8	y	0.00	0	13.0	0	14;12	n	0.17	3	14.5	3	22;7	y	0.10	3	26.5	3	35;18	y	0.21	5	19.0	5	32;6	y	0.17	5	24.0	5	37;11	y	ENSMUSG00000042210.18	Abhd14a	chr9	protein_coding	abhydrolase domain containing 14A
known_NIR_19306	chr9	106321505;106323028	106322725;106324730	-	106321505	106324730	cassetteExon	ENSMUST00000171925.8	known	1.00	11.5	0	20;3	0	n	0.77	13.5	4	26;1	4	n	0.73	8.0	3	15;1	3	n	0.86	12.5	2	23;2	2	y	0.80	27.5	7	50;5	7	y	0.75	6.0	2	12;0	2	n	0.73	24.5	9	47;2	9	y	1.00	7.5	0	14;1	0	n	0.81	13.0	3	22;4	3	y	0.86	19.0	3	35;3	3	y	0.77	17.0	5	32;2	5	y	0.80	19.5	5	37;2	5	y	ENSMUSG00000042210.18	Abhd14a	chr9	protein_coding	abhydrolase domain containing 14A
known_NIR_19307	chr9	106323033	106324570	-	106323033	106324730	A5SS	ENSMUST00000171678.9	known	0.50	6	6	6	6	y	0.20	2	8	2	8	y	0.36	4	7	4	7	y	0.42	8	11	8	11	y	0.22	4	14	4	14	y	0.56	5	4	5	4	n	0.43	6	8	6	8	y	0.25	4	12	4	12	y	0.50	7	7	7	7	y	0.14	3	18	3	18	y	0.40	4	6	4	6	y	0.27	4	11	4	11	y	ENSMUSG00000042210.18	Abhd14a	chr9	protein_coding	abhydrolase domain containing 14A
known_NIR_19308	chr9	106323033	106324730	-	106323028	106324730	A3SS	ENSMUST00000048685.13	known	0.67	6	3	6	3	n	0.89	8	1	8	1	n	0.88	7	1	7	1	n	0.85	11	2	11	2	y	0.74	14	5	14	5	y	1.00	4	0	4	0	n	0.80	8	2	8	2	y	0.92	12	1	12	1	n	0.64	7	4	7	4	y	0.86	18	3	18	3	y	0.75	6	2	6	2	n	0.85	11	2	11	2	y	ENSMUSG00000042210.18	Abhd14a	chr9	protein_coding	abhydrolase domain containing 14A
known_NIR_19309	chr9	106325023	106327203	+	106325493	106327203	5pMXE	ENSMUST00000186361.7	known	0.00	0	5	0	5	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.50	3	3	3	3	n	0.29	2	5	2	5	n	0.33	1	2	1	2	n	0.12	1	7	1	7	n	0.20	1	4	1	4	n	1.00	3	0	3	0	n	0.50	5	5	5	5	y	0.14	1	6	1	6	n	0.38	3	5	3	5	n	ENSMUSG00000042073.16	Abhd14b	chr9	protein_coding	abhydrolase domain containing 14b
known_NIR_19310	chr9	106325023	106327203	+	106325908	106327203	5pMXE	ENSMUST00000048527.15	known	0.00	0	240	0	240	n	0.00	0	171	0	171	n	0.00	0	82	0	82	n	0.01	3	288	3	288	y	0.01	2	288	2	288	y	0.02	1	64	1	64	n	0.00	1	315	1	315	n	0.01	1	133	1	133	n	0.01	3	262	3	262	y	0.01	5	365	5	365	y	0.00	1	287	1	287	n	0.01	3	413	3	413	y	ENSMUSG00000042073.16	Abhd14b	chr9	protein_coding	abhydrolase domain containing 14b
known_NIR_19311	chr9	106325023;106325493	106325411;106327203	+	106325023	106327203	cassetteExon	ENSMUST00000216130.2	known	1.00	11.5	0	18;5	0	n	1.00	14.0	0	25;3	0	n	1.00	4.5	0	9;0	0	n	0.75	9.0	3	15;3	3	y	0.90	18.0	2	31;5	2	y	0.85	5.5	1	9;2	1	n	0.95	21.0	1	35;7	1	n	0.88	7.5	1	11;4	1	n	0.77	10.0	3	20;0	3	n	0.78	18.0	5	31;5	5	y	0.93	14.0	1	22;6	1	n	0.81	12.5	3	20;5	3	y	ENSMUSG00000042073.16	Abhd14b	chr9	protein_coding	abhydrolase domain containing 14b
known_NIR_19312	chr9	106325023;106325527	106325411;106327203	+	106325023	106327203	cassetteExon	ENSMUST00000216130.2	known	1.00	28.5	0	18;39	0	n	1.00	25.0	0	25;25	0	n	1.00	8.5	0	9;8	0	n	0.88	22.5	3	15;30	3	y	0.95	36.0	2	31;41	2	y	0.89	8.5	1	9;8	1	n	0.98	45.0	1	35;55	1	n	0.93	13.0	1	11;15	1	n	0.87	20.5	3	20;21	3	y	0.87	34.0	5	31;37	5	y	0.96	26.5	1	22;31	1	n	0.89	25.0	3	20;30	3	y	ENSMUSG00000042073.16	Abhd14b	chr9	protein_coding	abhydrolase domain containing 14b
known_NIR_19313	chr9	106325023;106325908	106325411;106327203	+	106325023	106327203	cassetteExon	ENSMUST00000216130.2	known	1.00	129.0	0	18;240	0	n	1.00	98.0	0	25;171	0	n	1.00	45.5	0	9;82	0	n	0.98	151.5	3	15;288	3	y	0.99	159.5	2	31;288	2	y	0.97	36.5	1	9;64	1	n	0.99	175.0	1	35;315	1	n	0.99	72.0	1	11;133	1	n	0.98	141.0	3	20;262	3	y	0.98	198.0	5	31;365	5	y	0.99	154.5	1	22;287	1	n	0.99	216.5	3	20;413	3	y	ENSMUSG00000042073.16	Abhd14b	chr9	protein_coding	abhydrolase domain containing 14b
known_NIR_19314	chr9	106325493	106327203	+	106325527	106327203	A5SS	ENSMUST00000187106.7	known	0.11	5	39	5	39	y	0.11	3	25	3	25	y	0.00	0	8	0	8	n	0.09	3	30	3	30	y	0.11	5	41	5	41	y	0.20	2	8	2	8	y	0.11	7	55	7	55	y	0.21	4	15	4	15	y	0.00	0	21	0	21	n	0.12	5	37	5	37	y	0.16	6	31	6	31	y	0.14	5	30	5	30	y	ENSMUSG00000042073.16	Abhd14b	chr9	protein_coding	abhydrolase domain containing 14b
known_NIR_19315	chr9	106325908	106327203	+	106325493	106327203	A5SS	ENSMUST00000190167.7	known	0.98	240	5	240	5	y	0.98	171	3	171	3	y	1.00	82	0	82	0	n	0.99	288	3	288	3	y	0.98	288	5	288	5	y	0.97	64	2	64	2	y	0.98	315	7	315	7	y	0.97	133	4	133	4	y	1.00	262	0	262	0	n	0.99	365	5	365	5	y	0.98	287	6	287	6	y	0.99	413	5	413	5	y	ENSMUSG00000042073.16	Abhd14b	chr9	protein_coding	abhydrolase domain containing 14b
known_NIR_19316	chr9	106325908	106327203	+	106325527	106327203	A5SS	ENSMUST00000187106.7	known	0.86	240	39	240	39	y	0.87	171	25	171	25	y	0.91	82	8	82	8	y	0.91	288	30	288	30	y	0.88	288	41	288	41	y	0.89	64	8	64	8	y	0.85	315	55	315	55	y	0.90	133	15	133	15	y	0.93	262	21	262	21	y	0.91	365	37	365	37	y	0.90	287	31	287	31	y	0.93	413	30	413	30	y	ENSMUSG00000042073.16	Abhd14b	chr9	protein_coding	abhydrolase domain containing 14b
known_NIR_19317	chr9	106325908	106327203	+	106325908	106327113	A3SS	ENSMUST00000185347.8	known	0.90	240	28	240	28	y	0.83	171	35	171	35	y	0.80	82	20	82	20	y	0.90	288	33	288	33	y	0.87	288	43	288	43	y	0.78	64	18	64	18	y	0.88	315	41	315	41	y	0.82	133	30	133	30	y	0.88	262	35	262	35	y	0.86	365	58	365	58	y	0.90	287	33	287	33	y	0.89	413	50	413	50	y	ENSMUSG00000042073.16	Abhd14b	chr9	protein_coding	abhydrolase domain containing 14b
known_NIR_19318	chr9	106326001	106327203	+	106325023	106327203	A5SS	ENSMUST00000216130.2	known	1.00	17	0	17	0	n	1.00	6	0	6	0	n	1.00	6	0	6	0	n	0.80	12	3	12	3	y	0.78	7	2	7	2	n	0.00	0	1	0	1	n	0.89	8	1	8	1	n	0.80	4	1	4	1	n	0.84	16	3	16	3	y	0.74	14	5	14	5	y	0.94	17	1	17	1	n	0.88	21	3	21	3	y	ENSMUSG00000042073.16	Abhd14b	chr9	protein_coding	abhydrolase domain containing 14b
known_NIR_19319	chr9	106326001	106327203	+	106325493	106327203	A5SS	ENSMUST00000190167.7	known	0.77	17	5	17	5	y	0.67	6	3	6	3	n	1.00	6	0	6	0	n	0.80	12	3	12	3	y	0.58	7	5	7	5	y	0.00	0	2	0	2	n	0.53	8	7	8	7	y	0.50	4	4	4	4	n	1.00	16	0	16	0	n	0.74	14	5	14	5	y	0.74	17	6	17	6	y	0.81	21	5	21	5	y	ENSMUSG00000042073.16	Abhd14b	chr9	protein_coding	abhydrolase domain containing 14b
known_NIR_19320	chr9	106326001	106327203	+	106325527	106327203	A5SS	ENSMUST00000187106.7	known	0.30	17	39	17	39	y	0.19	6	25	6	25	y	0.43	6	8	6	8	y	0.29	12	30	12	30	y	0.15	7	41	7	41	y	0.00	0	8	0	8	n	0.13	8	55	8	55	y	0.21	4	15	4	15	y	0.43	16	21	16	21	y	0.27	14	37	14	37	y	0.35	17	31	17	31	y	0.41	21	30	21	30	y	ENSMUSG00000042073.16	Abhd14b	chr9	protein_coding	abhydrolase domain containing 14b
known_NIR_19321	chr9	106326001	106327203	+	106325908	106327203	A5SS	ENSMUST00000048527.15	known	0.07	17	240	17	240	y	0.03	6	171	6	171	y	0.07	6	82	6	82	y	0.04	12	288	12	288	y	0.02	7	288	7	288	y	0.00	0	64	0	64	n	0.02	8	315	8	315	y	0.03	4	133	4	133	y	0.06	16	262	16	262	y	0.04	14	365	14	365	y	0.06	17	287	17	287	y	0.05	21	413	21	413	y	ENSMUSG00000042073.16	Abhd14b	chr9	protein_coding	abhydrolase domain containing 14b
known_NIR_19322	chr9	106331206	106337204	+	106333642	106337204	5pMXE	ENSMUST00000190430.2	known	0.83	38	8	38	8	y	0.88	37	5	37	5	y	0.78	29	8	29	8	y	0.84	26	5	26	5	y	0.87	48	7	48	7	y	0.64	18	10	18	10	y	0.82	28	6	28	6	y	0.92	22	2	22	2	y	0.96	26	1	26	1	n	0.82	45	10	45	10	y	1.00	19	0	19	0	n	0.83	50	10	50	10	y	ENSMUSG00000023495.14	Pcbp4	chr9	protein_coding	poly(rC) binding protein 4
known_NIR_19323	chr9	106331206	106337238	+	106331206	106337204	A3SS	ENSMUST00000185874.7	known	0.00	0	38	0	38	n	0.00	0	37	0	37	n	0.00	0	29	0	29	n	0.00	0	26	0	26	n	0.00	0	48	0	48	n	0.00	0	18	0	18	n	0.00	0	28	0	28	n	0.00	0	22	0	22	n	0.00	0	26	0	26	n	0.00	0	45	0	45	n	0.10	2	19	2	19	y	0.00	0	50	0	50	n	ENSMUSG00000023495.14	Pcbp4	chr9	protein_coding	poly(rC) binding protein 4
known_NIR_19324	chr9	106331206;106333642	106333481;106337204	+	106331206	106337204	cassetteExon	ENSMUST00000185874.7	known	0.16	7.0	38	6;8	38	y	0.06	2.5	37	0;5	37	n	0.17	6.0	29	4;8	29	y	0.09	2.5	26	0;5	26	n	0.07	3.5	48	0;7	48	n	0.29	7.5	18	5;10	18	y	0.10	3.0	28	0;6	28	n	0.04	1.0	22	0;2	22	n	0.07	2.0	26	3;1	26	n	0.12	6.0	45	2;10	45	y	0.05	1.0	19	2;0	19	n	0.12	7.0	50	4;10	50	y	ENSMUSG00000023495.14	Pcbp4	chr9	protein_coding	poly(rC) binding protein 4
known_NIR_19325	chr9	106339096	106339268	+	106339122	106339268	A5SS	ENSMUST00000024260.14	known	0.00	0	56	0	56	n	0.00	0	77	0	77	n	0.04	2	45	2	45	y	0.00	0	48	0	48	n	0.00	0	72	0	72	n	0.00	0	17	0	17	n	0.00	0	59	0	59	n	0.00	0	34	0	34	n	0.00	0	39	0	39	n	0.00	0	82	0	82	n	0.00	0	49	0	49	n	0.02	2	98	2	98	y	ENSMUSG00000023495.14	Pcbp4	chr9	protein_coding	poly(rC) binding protein 4
known_NIR_19326	chr9	106339876	106340527	+	106339876	106340330	A3SS	ENSMUST00000024260.14	known	0.17	7	33	7	33	y	0.30	21	50	21	50	y	0.19	13	55	13	55	y	0.23	8	27	8	27	y	0.31	20	44	20	44	y	0.29	10	25	10	25	y	0.17	12	58	12	58	y	0.18	7	31	7	31	y	0.24	8	25	8	25	y	0.17	11	52	11	52	y	0.22	16	57	16	57	y	0.19	18	75	18	75	y	ENSMUSG00000023495.14	Pcbp4	chr9	protein_coding	poly(rC) binding protein 4
known_NIR_19327	chr9	106350718	106351257	-	106350718;106351032	106350880;106351257	ES	ENSMUST00000067218.14	known	0.00	0	75.0	0	74;76	n	0.00	0	64.0	0	82;46	n	0.00	0	107.5	0	106;109	n	0.00	0	58.5	0	79;38	n	0.00	0	120.5	0	134;107	n	0.00	0	58.5	0	60;57	n	0.02	2	88.5	2	107;70	y	0.02	2	78.5	2	88;69	y	0.00	0	50.5	0	46;55	n	0.00	0	79.5	0	96;63	n	0.00	0	69.5	0	73;66	n	0.00	0	76.5	0	79;74	n	ENSMUSG00000023249.16	Parp3	chr9	protein_coding	poly (ADP-ribose) polymerase family, member 3
known_NIR_19328	chr9	106350718	106351257	-	106351032	106351257	A3SS	ENSMUST00000145396.8	known	0.00	0	76	0	76	n	0.00	0	46	0	46	n	0.00	0	109	0	109	n	0.00	0	38	0	38	n	0.00	0	107	0	107	n	0.00	0	57	0	57	n	0.03	2	70	2	70	y	0.03	2	69	2	69	y	0.00	0	55	0	55	n	0.00	0	63	0	63	n	0.00	0	66	0	66	n	0.00	0	74	0	74	n	ENSMUSG00000023249.16	Parp3	chr9	protein_coding	poly (ADP-ribose) polymerase family, member 3
known_NIR_19329	chr9	106351734	106351879	-	106351719	106351879	A3SS	ENSMUST00000067218.14	known	0.09	5	49	5	49	y	0.09	3	31	3	31	y	0.25	20	59	20	59	y	0.07	3	40	3	40	y	0.12	11	81	11	81	y	0.07	2	25	2	25	y	0.18	11	51	11	51	y	0.15	6	34	6	34	y	0.14	5	31	5	31	y	0.15	8	47	8	47	y	0.07	2	28	2	28	y	0.17	10	49	10	49	y	ENSMUSG00000023249.16	Parp3	chr9	protein_coding	poly (ADP-ribose) polymerase family, member 3
known_NIR_19330	chr9	106353181	106353281	-	106353181	106353692	A5SS	ENSMUST00000067218.14	known	0.37	18	31	18	31	y	0.41	22	32	22	32	y	0.18	23	104	23	104	y	0.13	6	41	6	41	y	0.35	24	44	24	44	y	0.20	12	47	12	47	y	0.19	11	47	11	47	y	0.32	23	48	23	48	y	0.29	11	27	11	27	y	0.31	20	44	20	44	y	0.40	18	27	18	27	y	0.37	21	36	21	36	y	ENSMUSG00000023249.16	Parp3	chr9	protein_coding	poly (ADP-ribose) polymerase family, member 3
known_NIR_19331	chr9	106353181	106353524	-	106353181	106353281	A5SS	ENSMUST00000123555.8	known	0.28	7	18	7	18	y	0.04	1	22	1	22	n	0.04	1	23	1	23	n	0.40	4	6	4	6	y	0.17	5	24	5	24	y	0.00	0	12	0	12	n	0.15	2	11	2	11	y	0.08	2	23	2	23	y	0.35	6	11	6	11	y	0.39	13	20	13	20	y	0.18	4	18	4	18	y	0.28	8	21	8	21	y	ENSMUSG00000023249.16	Parp3	chr9	protein_coding	poly (ADP-ribose) polymerase family, member 3
known_NIR_19332	chr9	106353181	106353524	-	106353181	106353692	A5SS	ENSMUST00000067218.14	known	0.18	7	31	7	31	y	0.03	1	32	1	32	n	0.01	1	104	1	104	n	0.09	4	41	4	41	y	0.10	5	44	5	44	y	0.00	0	47	0	47	n	0.04	2	47	2	47	y	0.04	2	48	2	48	y	0.18	6	27	6	27	y	0.23	13	44	13	44	y	0.13	4	27	4	27	y	0.18	8	36	8	36	y	ENSMUSG00000023249.16	Parp3	chr9	protein_coding	poly (ADP-ribose) polymerase family, member 3
known_NIR_19333	chr9	106550937	106562128	-	106550937;106559362	106559067;106562128	ES	ENSMUST00000169068.8	known	0.00	0	187.5	0	185;190	n	0.01	1	187.5	1	167;208	n	0.00	0	144.0	0	154;134	n	0.00	0	204.5	0	182;227	n	0.01	2	234.5	2	240;229	y	0.00	0	81.5	0	76;87	n	0.00	0	244.0	0	251;237	n	0.00	0	118.0	0	119;117	n	0.00	0	154.5	0	141;168	n	0.01	3	268.0	3	273;263	y	0.00	0	198.5	0	205;192	n	0.00	0	204.0	0	194;214	n	ENSMUSG00000040813.17	Tex264	chr9	protein_coding	testis expressed gene 264
known_NIR_19334	chr9	106559362	106562146	-	106559362	106562128	A5SS	ENSMUST00000169068.8	known	0.02	3	190	3	190	y	0.02	5	208	5	208	y	0.06	8	134	8	134	y	0.02	5	227	5	227	y	0.03	8	229	8	229	y	0.04	4	87	4	87	y	0.01	3	237	3	237	y	0.02	2	117	2	117	y	0.02	3	168	3	168	y	0.02	6	263	6	263	y	0.03	5	192	5	192	y	0.01	3	214	3	214	y	ENSMUSG00000040813.17	Tex264	chr9	protein_coding	testis expressed gene 264
known_NIR_19335	chr9	106562194	106562443	-	106562194	106562834	A5SS	ENSMUST00000169068.8	known	0.52	67	63	67	63	y	0.43	36	47	36	47	y	0.48	40	43	40	43	y	0.40	37	55	37	55	y	0.50	54	55	54	55	y	0.53	32	28	32	28	y	0.54	75	65	75	65	y	0.58	32	23	32	23	y	0.38	37	60	37	60	y	0.52	79	72	79	72	y	0.48	53	57	53	57	y	0.46	44	52	44	52	y	ENSMUSG00000040813.17	Tex264	chr9	protein_coding	testis expressed gene 264
known_NIR_19336	chr9	106562194	106562817	-	106562194	106562443	A5SS	ENSMUST00000163441.8	known	0.01	1	67	1	67	n	0.08	3	36	3	36	y	0.02	1	40	1	40	n	0.07	3	37	3	37	y	0.04	2	54	2	54	y	0.03	1	32	1	32	n	0.00	0	75	0	75	n	0.06	2	32	2	32	y	0.03	1	37	1	37	n	0.05	4	79	4	79	y	0.02	1	53	1	53	n	0.00	0	44	0	44	n	ENSMUSG00000040813.17	Tex264	chr9	protein_coding	testis expressed gene 264
known_NIR_19337	chr9	106562194	106562817	-	106562194	106562834	A5SS	ENSMUST00000169068.8	known	0.02	1	63	1	63	n	0.06	3	47	3	47	y	0.02	1	43	1	43	n	0.05	3	55	3	55	y	0.04	2	55	2	55	y	0.03	1	28	1	28	n	0.00	0	65	0	65	n	0.08	2	23	2	23	y	0.02	1	60	1	60	n	0.05	4	72	4	72	y	0.02	1	57	1	57	n	0.00	0	52	0	52	n	ENSMUSG00000040813.17	Tex264	chr9	protein_coding	testis expressed gene 264
known_NIR_19338	chr9	106562194	106562817	-	106562194	106563034	A5SS	ENSMUST00000046735.11	known	0.02	1	45	1	45	n	0.05	3	52	3	52	y	0.03	1	38	1	38	n	0.05	3	60	3	60	y	0.03	2	57	2	57	y	0.03	1	33	1	33	n	0.00	0	65	0	65	n	0.07	2	27	2	27	y	0.02	1	44	1	44	n	0.04	4	86	4	86	y	0.02	1	50	1	50	n	0.00	0	77	0	77	n	ENSMUSG00000040813.17	Tex264	chr9	protein_coding	testis expressed gene 264
known_NIR_19339	chr9	106562194	106563034	-	106562194	106562443	5pMXE	ENSMUST00000163441.8	known	0.40	45	67	45	67	y	0.59	52	36	52	36	y	0.49	38	40	38	40	y	0.62	60	37	60	37	y	0.51	57	54	57	54	y	0.51	33	32	33	32	y	0.46	65	75	65	75	y	0.46	27	32	27	32	y	0.54	44	37	44	37	y	0.52	86	79	86	79	y	0.49	50	53	50	53	y	0.64	77	44	77	44	y	ENSMUSG00000040813.17	Tex264	chr9	protein_coding	testis expressed gene 264
known_NIR_19340	chr9	106562194	106563034	-	106562194	106562834	5pMXE	ENSMUST00000169068.8	known	0.42	45	63	45	63	y	0.53	52	47	52	47	y	0.47	38	43	38	43	y	0.52	60	55	60	55	y	0.51	57	55	57	55	y	0.54	33	28	33	28	y	0.50	65	65	65	65	y	0.54	27	23	27	23	y	0.42	44	60	44	60	y	0.54	86	72	86	72	y	0.47	50	57	50	57	y	0.60	77	52	77	52	y	ENSMUSG00000040813.17	Tex264	chr9	protein_coding	testis expressed gene 264
known_NIR_19341	chr9	106599406	106599915	-	106597663	106599915	A3SS	ENSMUST00000046502.7	known	0.00	0	23	0	23	n	0.00	0	9	0	9	n	0.00	0	23	0	23	n	0.00	0	21	0	21	n	0.00	0	23	0	23	n	0.00	0	21	0	21	n	0.00	0	16	0	16	n	0.12	2	15	2	15	y	0.00	0	7	0	7	n	0.00	0	18	0	18	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	ENSMUSG00000040661.7	Rad54l2	chr9	protein_coding	RAD54 like 2 (S. cerevisiae)
known_NIR_19342	chr9	106741819	106742212	+	106741819	106742230	A3SS	ENSMUST00000159645.8	known	0.05	2	39	2	39	y	0.00	0	43	0	43	n	0.00	0	48	0	48	n	0.00	0	26	0	26	n	0.00	0	56	0	56	n	0.00	0	31	0	31	n	0.02	1	42	1	42	n	0.00	0	23	0	23	n	0.00	0	25	0	25	n	0.00	0	58	0	58	n	0.00	0	55	0	55	n	0.00	0	45	0	45	n	ENSMUSG00000040325.17	Dcaf1	chr9	protein_coding	DDB1 and CUL4 associated factor 1
known_NIR_19343	chr9	106746560	106747402	-	106715656	106747402	A3SS	ENSMUST00000159620.9	known	1.00	5	0	5	0	n	1.00	4	0	4	0	n	1.00	15	0	15	0	n	1.00	4	0	4	0	n	0.88	15	2	15	2	y	0.94	15	1	15	1	n	0.93	14	1	14	1	n	0.91	10	1	10	1	n	1.00	12	0	12	0	n	1.00	8	0	8	0	n	1.00	6	0	6	0	n	1.00	7	0	7	0	n	ENSMUSG00000032575.17	Manf	chr9	protein_coding	mesencephalic astrocyte-derived neurotrophic factor
known_NIR_19344	chr9	106751507	106757136	+	106751507	106757133	A3SS	ENSMUST00000055009.15	known	0.19	6	26	6	26	y	0.12	6	42	6	42	y	0.11	5	40	5	40	y	0.22	9	32	9	32	y	0.00	0	44	0	44	n	0.18	6	27	6	27	y	0.41	15	22	15	22	y	0.14	5	30	5	30	y	0.15	6	33	6	33	y	0.26	11	31	11	31	y	0.17	7	34	7	34	y	0.26	9	25	9	25	y	ENSMUSG00000040325.17	Dcaf1	chr9	protein_coding	DDB1 and CUL4 associated factor 1
known_NIR_19345	chr9	106766424	106767360	-	106747471	106767360	A3SS	ENSMUST00000159620.9	known	0.99	1039	15	1039	15	y	0.99	1459	14	1459	14	y	0.99	3306	21	3306	21	y	0.99	862	11	862	11	y	0.99	2138	30	2138	30	y	0.99	2181	22	2181	22	y	0.98	1209	26	1209	26	y	0.99	1922	21	1922	21	y	0.99	845	11	845	11	y	0.98	899	15	899	15	y	0.99	1064	11	1064	11	y	0.99	862	13	862	13	y	ENSMUSG00000032575.17	Manf	chr9	protein_coding	mesencephalic astrocyte-derived neurotrophic factor
known_NIR_19346	chr9	106766465	106767360	-	106747471	106767360	A3SS	ENSMUST00000159620.9	known	0.00	0	15	0	15	n	0.00	0	14	0	14	n	0.00	0	21	0	21	n	0.00	0	11	0	11	n	0.00	0	30	0	30	n	0.00	0	22	0	22	n	0.00	0	26	0	26	n	0.00	0	21	0	21	n	0.00	0	11	0	11	n	0.12	2	15	2	15	y	0.00	0	11	0	11	n	0.00	0	13	0	13	n	ENSMUSG00000032575.17	Manf	chr9	protein_coding	mesencephalic astrocyte-derived neurotrophic factor
known_NIR_19347	chr9	106766465	106767360	-	106766424	106767360	A3SS	ENSMUST00000159283.8	known	0.00	0	1039	0	1039	n	0.00	0	1459	0	1459	n	0.00	0	3306	0	3306	n	0.00	0	862	0	862	n	0.00	0	2138	0	2138	n	0.00	0	2181	0	2181	n	0.00	0	1209	0	1209	n	0.00	0	1922	0	1922	n	0.00	0	845	0	845	n	0.00	2	899	2	899	y	0.00	0	1064	0	1064	n	0.00	0	862	0	862	n	ENSMUSG00000032575.17	Manf	chr9	protein_coding	mesencephalic astrocyte-derived neurotrophic factor
known_NIR_19348	chr9	107162340	107166319	-	107140963	107166319	A3SS	ENSMUST00000035194.8	known	0.00	0	7	0	7	n	0.50	2	2	2	2	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.50	4	4	4	4	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.33	1	2	1	2	n	0.17	2	10	2	10	y	ENSMUSG00000032577.17	Mapkapk3	chr9	protein_coding	mitogen-activated protein kinase-activated protein kinase 3
known_NIR_19349	chr9	107206631	107207909	-	107206631	107207972	A5SS	ENSMUST00000035196.14	known	0.00	0	27	0	27	n	0.00	0	26	0	26	n	0.00	0	14	0	14	n	0.00	0	20	0	20	n	0.00	0	29	0	29	n	0.00	0	8	0	8	n	0.06	2	31	2	31	y	0.00	0	18	0	18	n	0.00	0	37	0	37	n	0.00	0	42	0	42	n	0.02	1	40	1	40	n	0.00	0	37	0	37	n	ENSMUSG00000032579.15	Hemk1	chr9	protein_coding	HemK methyltransferase family member 1
known_NIR_19350	chr9	107418239	107419234	-	107418239	107418696	5pMXE	ENSMUST00000041459.9	known	0.05	2	39	2	39	y	0.00	0	33	0	33	n	0.03	1	33	1	33	n	0.00	0	37	0	37	n	0.00	0	54	0	54	n	0.00	0	20	0	20	n	0.00	0	39	0	39	n	0.00	0	36	0	36	n	0.03	1	37	1	37	n	0.00	0	54	0	54	n	0.00	0	37	0	37	n	0.00	0	45	0	45	n	ENSMUSG00000037190.13	Cyb561d2	chr9	protein_coding	cytochrome b-561 domain containing 2
known_NIR_19351	chr9	107418239	107419234	-	107418239;107418849	107418696;107419234	ES	ENSMUST00000195235.6	known	0.05	2	38.0	2	39;37	y	0.00	0	41.0	0	33;49	n	0.03	1	30.0	1	33;27	n	0.00	0	35.0	0	37;33	n	0.00	0	50.5	0	54;47	n	0.00	0	27.5	0	20;35	n	0.00	0	35.0	0	39;31	n	0.00	0	26.5	0	36;17	n	0.03	1	31.0	1	37;25	n	0.00	0	42.0	0	54;30	n	0.00	0	37.5	0	37;38	n	0.00	0	38.0	0	45;31	n	ENSMUSG00000037190.13	Cyb561d2	chr9	protein_coding	cytochrome b-561 domain containing 2
known_NIR_19352	chr9	107418239	107419234	-	107418849	107419234	A3SS&ES	ENSMUST00000194967.2	known	0.05	2	37	2	37	y	0.00	0	49	0	49	n	0.04	1	27	1	27	n	0.00	0	33	0	33	n	0.00	0	47	0	47	n	0.00	0	35	0	35	n	0.00	0	31	0	31	n	0.00	0	17	0	17	n	0.04	1	25	1	25	n	0.00	0	30	0	30	n	0.00	0	38	0	38	n	0.00	0	31	0	31	n	ENSMUSG00000037190.13	Cyb561d2	chr9	protein_coding	cytochrome b-561 domain containing 2
known_NIR_19353	chr9	107418268	107418696	-	107418239	107418696	A3SS	ENSMUST00000041459.9	known	0.00	0	39	0	39	n	0.00	0	33	0	33	n	0.03	1	33	1	33	n	0.05	2	37	2	37	y	0.00	0	54	0	54	n	0.00	0	20	0	20	n	0.09	4	39	4	39	y	0.00	0	36	0	36	n	0.00	0	37	0	37	n	0.02	1	54	1	54	n	0.00	0	37	0	37	n	0.00	0	45	0	45	n	ENSMUSG00000037190.13	Cyb561d2	chr9	protein_coding	cytochrome b-561 domain containing 2
known_NIR_19354	chr9	107420814	107421376	+	107420814	107421350	A3SS	ENSMUST00000010201.9	known	0.00	0	42	0	42	n	0.00	0	30	0	30	n	0.00	0	31	0	31	n	0.05	2	40	2	40	y	0.02	1	52	1	52	n	0.04	1	23	1	23	n	0.04	2	53	2	53	y	0.03	1	34	1	34	n	0.00	0	43	0	43	n	0.04	2	55	2	55	y	0.00	0	51	0	51	n	0.04	3	74	3	74	y	ENSMUSG00000010057.9	Nprl2	chr9	protein_coding	NPR2 like, GATOR1 complex subunit
known_NIR_19355	chr9	107433950	107434652	+	107432124	107434652	A5SS	ENSMUST00000010211.7	known	0.00	0	17	0	17	n	0.00	0	12	0	12	n	0.03	2	73	2	73	y	0.00	0	9	0	9	n	0.00	0	26	0	26	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	29	0	29	n	0.00	0	16	0	16	n	0.00	0	20	0	20	n	ENSMUSG00000010067.14	Rassf1	chr9	protein_coding	Ras association (RalGDS/AF-6) domain family member 1
known_NIR_19356	chr9	107440731	107441028	+	107440731	107441775	A3SS	ENSMUST00000010198.5	known	0.03	3	115	3	115	y	0.00	0	99	0	99	n	0.03	4	143	4	143	y	0.00	0	71	0	71	n	0.00	0	151	0	151	n	0.00	0	74	0	74	n	0.01	1	147	1	147	n	0.00	0	73	0	73	n	0.00	0	89	0	89	n	0.00	0	119	0	119	n	0.00	0	93	0	93	n	0.00	0	111	0	111	n	ENSMUSG00000010054.5	Tusc2	chr9	protein_coding	tumor suppressor 2, mitochondrial calcium regulator
known_NIR_19357	chr9	107441871	107442046	+	107441895	107442046	A5SS	ENSMUST00000010198.5	known	0.00	0	171	0	171	n	0.03	5	169	5	169	y	0.00	0	253	0	253	n	0.02	4	199	4	199	y	0.04	11	247	11	247	y	0.02	3	140	3	140	y	0.00	0	285	0	285	n	0.01	2	142	2	142	y	0.06	7	118	7	118	y	0.05	12	241	12	241	y	0.00	0	162	0	162	n	0.05	8	166	8	166	y	ENSMUSG00000010054.5	Tusc2	chr9	protein_coding	tumor suppressor 2, mitochondrial calcium regulator
known_NIR_19358	chr9	107445175	107447303	+	107446432	107447303	5pMXE	ENSMUST00000010191.13	known	0.09	5	48	5	48	y	0.05	3	55	3	55	y	0.05	6	126	6	126	y	0.07	8	112	8	112	y	0.08	12	131	12	131	y	0.18	11	51	11	51	y	0.07	7	99	7	99	y	0.07	5	67	5	67	y	0.00	0	64	0	64	n	0.09	8	85	8	85	y	0.13	10	68	10	68	y	0.06	5	83	5	83	y	ENSMUSG00000010047.13	Hyal2	chr9	protein_coding	hyaluronoglucosaminidase 2
known_NIR_19359	chr9	107445175	107447303	+	107446628	107447303	5pMXE	ENSMUST00000194794.2	known	0.56	5	4	5	4	n	0.38	3	5	3	5	n	0.50	6	6	6	6	y	0.53	8	7	8	7	y	0.57	12	9	12	9	y	0.69	11	5	11	5	y	0.58	7	5	7	5	y	0.50	5	5	5	5	y	0.00	0	5	0	5	n	0.62	8	5	8	5	y	0.77	10	3	10	3	y	0.62	5	3	5	3	n	ENSMUSG00000010047.13	Hyal2	chr9	protein_coding	hyaluronoglucosaminidase 2
known_NIR_19360	chr9	107445175;107446432	107446182;107447303	+	107445175	107447303	cassetteExon	ENSMUST00000192887.6	known	0.86	30.0	5	12;48	5	y	0.92	33.5	3	12;55	3	y	0.92	68.0	6	10;126	6	y	0.89	68.0	8	24;112	8	y	0.87	77.5	12	24;131	12	y	0.75	33.5	11	16;51	11	y	0.90	64.5	7	30;99	7	y	0.89	41.0	5	15;67	5	y	1.00	37.5	0	11;64	0	n	0.89	68.0	8	51;85	8	y	0.80	39.5	10	11;68	10	y	0.92	55.0	5	27;83	5	y	ENSMUSG00000010047.13	Hyal2	chr9	protein_coding	hyaluronoglucosaminidase 2
known_NIR_19361	chr9	107445175;107446628	107446182;107447303	+	107445175	107447303	cassetteExon	ENSMUST00000192887.6	known	0.62	8.0	5	12;4	5	y	0.74	8.5	3	12;5	3	y	0.57	8.0	6	10;6	6	y	0.66	15.5	8	24;7	8	y	0.58	16.5	12	24;9	12	y	0.49	10.5	11	16;5	11	y	0.71	17.5	7	30;5	7	y	0.67	10.0	5	15;5	5	y	1.00	8.0	0	11;5	0	n	0.78	28.0	8	51;5	8	y	0.41	7.0	10	11;3	10	y	0.75	15.0	5	27;3	5	y	ENSMUSG00000010047.13	Hyal2	chr9	protein_coding	hyaluronoglucosaminidase 2
known_NIR_19362	chr9	107446628	107447303	+	107446432	107447303	A5SS	ENSMUST00000195752.6	known	0.08	4	48	4	48	y	0.08	5	55	5	55	y	0.05	6	126	6	126	y	0.06	7	112	7	112	y	0.06	9	131	9	131	y	0.09	5	51	5	51	y	0.05	5	99	5	99	y	0.07	5	67	5	67	y	0.07	5	64	5	64	y	0.06	5	85	5	85	y	0.04	3	68	3	68	y	0.03	3	83	3	83	y	ENSMUSG00000010047.13	Hyal2	chr9	protein_coding	hyaluronoglucosaminidase 2
known_NIR_19363	chr9	107454277	107455527	+	107454277	107454752	A3SS	ENSMUST00000112387.9	known	0.00	0	82	0	82	n	0.00	0	55	0	55	n	0.01	1	80	1	80	n	0.00	0	80	0	80	n	0.01	1	103	1	103	n	0.00	0	57	0	57	n	0.02	2	80	2	80	y	0.00	0	63	0	63	n	0.00	0	55	0	55	n	0.00	0	84	0	84	n	0.00	0	32	0	32	n	0.03	2	72	2	72	y	ENSMUSG00000010051.16	Hyal1	chr9	protein_coding	hyaluronoglucosaminidase 1
known_NIR_19364	chr9	107456169	107460016	+	107456169	107456299	3pMXE	ENSMUST00000123005.8	known	0.00	0	135	0	135	n	0.03	3	106	3	106	y	0.03	5	147	5	147	y	0.00	0	141	0	141	n	0.04	7	159	7	159	y	0.03	2	67	2	67	y	0.05	7	136	7	136	y	0.02	2	97	2	97	y	0.00	0	105	0	105	n	0.00	0	162	0	162	n	0.00	0	74	0	74	n	0.00	0	125	0	125	n	ENSMUSG00000010051.16	Hyal1	chr9	protein_coding	hyaluronoglucosaminidase 1
known_NIR_19365	chr9	107456169	107460016	+	107456169;107456584	107456299;107460016	ES	ENSMUST00000130053.8	known	0.00	0	67.5	0	135;0	n	0.05	3	54.5	3	106;3	y	0.06	5	74.5	5	147;2	y	0.00	0	70.5	0	141;0	n	0.08	7	80.0	7	159;1	n	0.06	2	33.5	2	67;0	n	0.09	7	68.0	7	136;0	n	0.04	2	48.5	2	97;0	n	0.00	0	52.5	0	105;0	n	0.00	0	81.0	0	162;0	n	0.00	0	37.0	0	74;0	n	0.00	0	62.5	0	125;0	n	ENSMUSG00000079334.9	Naa80	chr9	protein_coding	N(alpha)-acetyltransferase 80, NatH catalytic subunit
known_NIR_19366	chr9	107456169	107460016	+	107456169;107458134	107456299;107460016	ES	ENSMUST00000122985.8	known	0.00	0	93.5	0	135;52	n	0.04	3	79.5	3	106;53	y	0.05	5	103.5	5	147;60	y	0.00	0	106.0	0	141;71	n	0.06	7	110.0	7	159;61	y	0.04	2	48.5	2	67;30	y	0.06	7	103.0	7	136;70	y	0.03	2	68.0	2	97;39	y	0.00	0	79.5	0	105;54	n	0.00	0	116.0	0	162;70	n	0.00	0	61.5	0	74;49	n	0.00	0	91.5	0	125;58	n	ENSMUSG00000079334.9	Naa80	chr9	protein_coding	N(alpha)-acetyltransferase 80, NatH catalytic subunit
known_NIR_19367	chr9	107456584	107460016	+	107456584	107457656	3pMXE	ENSMUST00000112387.9	known	0.00	0	14	0	14	n	0.14	3	19	3	19	y	0.05	2	37	2	37	y	0.00	0	17	0	17	n	0.03	1	38	1	38	n	0.00	0	13	0	13	n	0.00	0	32	0	32	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	32	0	32	n	0.00	0	14	0	14	n	0.00	0	19	0	19	n	ENSMUSG00000010051.16	Hyal1	chr9	protein_coding	hyaluronoglucosaminidase 1
known_NIR_19368	chr9	107456584	107460016	+	107458134	107460016	A5SS	ENSMUST00000122985.8	known	0.00	0	52	0	52	n	0.05	3	53	3	53	y	0.03	2	60	2	60	y	0.00	0	71	0	71	n	0.02	1	61	1	61	n	0.00	0	30	0	30	n	0.00	0	70	0	70	n	0.00	0	39	0	39	n	0.00	0	54	0	54	n	0.00	0	70	0	70	n	0.00	0	49	0	49	n	0.00	0	58	0	58	n	ENSMUSG00000079334.9	Naa80	chr9	protein_coding	N(alpha)-acetyltransferase 80, NatH catalytic subunit
known_NIR_19369	chr9	107456584;107458134	107457656;107460016	+	107456584	107460016	cassetteExon	ENSMUST00000130053.8	known	1.00	33.0	0	14;52	0	n	0.92	36.0	3	19;53	3	y	0.96	48.5	2	37;60	2	y	1.00	44.0	0	17;71	0	n	0.98	49.5	1	38;61	1	n	1.00	21.5	0	13;30	0	n	1.00	51.0	0	32;70	0	n	1.00	24.5	0	10;39	0	n	1.00	33.5	0	13;54	0	n	1.00	51.0	0	32;70	0	n	1.00	31.5	0	14;49	0	n	1.00	38.5	0	19;58	0	n	ENSMUSG00000079334.9	Naa80	chr9	protein_coding	N(alpha)-acetyltransferase 80, NatH catalytic subunit
known_NIR_19370	chr9	107458134	107460016	+	107456169	107460016	A5SS	ENSMUST00000127380.8	known	1.00	52	0	52	0	n	0.95	53	3	53	3	y	0.92	60	5	60	5	y	1.00	71	0	71	0	n	0.90	61	7	61	7	y	0.94	30	2	30	2	y	0.91	70	7	70	7	y	0.95	39	2	39	2	y	1.00	54	0	54	0	n	1.00	70	0	70	0	n	1.00	49	0	49	0	n	1.00	58	0	58	0	n	ENSMUSG00000079334.9	Naa80	chr9	protein_coding	N(alpha)-acetyltransferase 80, NatH catalytic subunit
known_NIR_19371	chr9	107458134	107460016	+	107458134	107460335	A3SS	ENSMUST00000149638.8	known	1.00	52	0	52	0	n	0.98	53	1	53	1	n	1.00	60	0	60	0	n	1.00	71	0	71	0	n	1.00	61	0	61	0	n	1.00	30	0	30	0	n	1.00	70	0	70	0	n	1.00	39	0	39	0	n	1.00	54	0	54	0	n	1.00	70	0	70	0	n	1.00	49	0	49	0	n	0.95	58	3	58	3	y	ENSMUSG00000079334.9	Naa80	chr9	protein_coding	N(alpha)-acetyltransferase 80, NatH catalytic subunit
known_NIR_19372	chr9	107458134	107461951	+	107458134	107460016	3pMXE	ENSMUST00000122985.8	known	0.00	0	52	0	52	n	0.00	0	53	0	53	n	0.00	0	60	0	60	n	0.00	0	71	0	71	n	0.03	2	61	2	61	y	0.00	0	30	0	30	n	0.00	0	70	0	70	n	0.00	0	39	0	39	n	0.00	0	54	0	54	n	0.00	0	70	0	70	n	0.00	0	49	0	49	n	0.03	2	58	2	58	y	ENSMUSG00000079334.9	Naa80	chr9	protein_coding	N(alpha)-acetyltransferase 80, NatH catalytic subunit
known_NIR_19373	chr9	107469402	107469456	+	107469402	107469475	A3SS	ENSMUST00000010192.11	known	0.00	0	134	0	134	n	0.00	0	134	0	134	n	0.00	0	88	0	88	n	0.00	0	90	0	90	n	0.00	0	128	0	128	n	0.00	0	55	0	55	n	0.00	0	160	0	160	n	0.00	0	71	0	71	n	0.00	0	111	0	111	n	0.00	0	169	0	169	n	0.01	2	154	2	154	y	0.00	0	154	0	154	n	ENSMUSG00000010048.11	Ifrd2	chr9	protein_coding	interferon-related developmental regulator 2
known_NIR_19374	chr9	107492297	107492811	-	107491914	107492811	A3SS	ENSMUST00000192615.6	known	0.86	194	32	194	32	y	0.85	229	41	229	41	y	0.91	314	32	314	32	y	0.88	155	22	155	22	y	0.87	263	39	263	39	y	0.94	150	9	150	9	y	0.84	256	48	256	48	y	0.84	118	22	118	22	y	0.83	138	28	138	28	y	0.89	252	32	252	32	y	0.87	180	28	180	28	y	0.88	223	29	223	29	y	ENSMUSG00000032562.14	Gnai2	chr9	protein_coding	guanine nucleotide binding protein (G protein), alpha inhibiting 2
known_NIR_19375	chr9	107532666	107532784	-	107532579	107532784	A3SS	ENSMUST00000167868.8	known	0.00	10	2666	10	2666	y	0.00	10	2410	10	2410	y	0.00	5	2175	5	2175	y	0.00	19	3987	19	3987	y	0.00	18	4002	18	4002	y	0.00	3	1536	3	1536	y	0.01	26	3216	26	3216	y	0.01	12	2017	12	2017	y	0.00	10	2809	10	2809	y	0.00	18	4177	18	4177	y	0.00	8	2784	8	2784	y	0.00	13	5516	13	5516	y	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
known_NIR_19376	chr9	107532884	107533163	-	107532884	107533134	A5SS	ENSMUST00000167868.8	known	0.00	10	2452	10	2452	y	0.01	22	2112	22	2112	y	0.01	19	1965	19	1965	y	0.00	16	3518	16	3518	y	0.01	27	3484	27	3484	y	0.01	7	1323	7	1323	y	0.01	18	2956	18	2956	y	0.00	6	1966	6	1966	y	0.01	23	2483	23	2483	y	0.01	20	3824	20	3824	y	0.01	23	2415	23	2415	y	0.00	16	5095	16	5095	y	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
known_NIR_19377	chr9	107534257	107534829	-	107533876	107534829	A3SS	ENSMUST00000167868.8	known	0.00	1	1980	1	1980	n	0.00	4	1489	4	1489	y	0.01	11	1502	11	1502	y	0.00	6	2730	6	2730	y	0.00	4	2794	4	2794	y	0.00	0	1006	0	1006	n	0.00	8	2230	8	2230	y	0.00	6	1464	6	1464	y	0.00	1	2075	1	2075	n	0.00	7	2846	7	2846	y	0.00	2	1809	2	1809	y	0.00	4	3933	4	3933	y	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
known_NIR_19378	chr9	107536443	107536567	-	107536443	107544335	A5SS	ENSMUST00000010208.14	known	0.01	1	156	1	156	n	0.00	0	132	0	132	n	0.02	3	187	3	187	y	0.01	2	240	2	240	y	0.01	2	306	2	306	y	0.00	0	147	0	147	n	0.00	1	200	1	200	n	0.02	5	199	5	199	y	0.01	2	182	2	182	y	0.01	2	295	2	295	y	0.02	3	140	3	140	y	0.01	2	341	2	341	y	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
known_NIR_19379	chr9	107536443	107536567	-	107536443	107544503	A5SS	ENSMUST00000193932.6	known	0.00	1	1067	1	1067	n	0.00	0	732	0	732	n	0.00	3	830	3	830	y	0.00	2	1688	2	1688	y	0.00	2	1641	2	1641	y	0.00	0	640	0	640	n	0.00	1	1104	1	1104	n	0.01	5	895	5	895	y	0.00	2	1087	2	1087	y	0.00	2	1677	2	1677	y	0.00	3	1010	3	1010	y	0.00	2	2124	2	2124	y	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
known_NIR_19380	chr9	107536443	107536567	-	107536443	107545914	A5SS	ENSMUST00000192990.6	known	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	3	0	3	0	n	0.50	2	2	2	2	n	1.00	2	0	2	0	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.83	5	1	5	1	n	0.67	2	1	2	1	n	1.00	2	0	2	0	n	0.60	3	2	3	2	n	0.12	2	14	2	14	y	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
known_NIR_19381	chr9	107536443	107536567	-	107536443	107546052	A5SS	ENSMUST00000194895.6	known	0.06	1	17	1	17	n	0.00	0	10	0	10	n	0.18	3	14	3	14	y	0.07	2	26	2	26	y	0.05	2	35	2	35	y	0.00	0	18	0	18	n	0.05	1	19	1	19	n	0.22	5	18	5	18	y	0.09	2	21	2	21	y	0.04	2	46	2	46	y	0.16	3	16	3	16	y	0.02	2	114	2	114	y	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
known_NIR_19382	chr9	107536443	107542369	-	107536443	107544335	A5SS	ENSMUST00000010208.14	known	0.15	28	156	28	156	y	0.12	18	132	18	132	y	0.13	28	187	28	187	y	0.20	61	240	61	240	y	0.14	49	306	49	306	y	0.09	15	147	15	147	y	0.17	40	200	40	200	y	0.13	30	199	30	199	y	0.15	33	182	33	182	y	0.15	53	295	53	295	y	0.18	31	140	31	140	y	0.14	56	341	56	341	y	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
known_NIR_19383	chr9	107536443	107542369	-	107536443	107544503	A5SS	ENSMUST00000193932.6	known	0.03	28	1067	28	1067	y	0.02	18	732	18	732	y	0.03	28	830	28	830	y	0.03	61	1688	61	1688	y	0.03	49	1641	49	1641	y	0.02	15	640	15	640	y	0.03	40	1104	40	1104	y	0.03	30	895	30	895	y	0.03	33	1087	33	1087	y	0.03	53	1677	53	1677	y	0.03	31	1010	31	1010	y	0.03	56	2124	56	2124	y	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
known_NIR_19384	chr9	107536443	107542369	-	107536443	107546052	A5SS	ENSMUST00000194895.6	known	0.62	28	17	28	17	y	0.64	18	10	18	10	y	0.67	28	14	28	14	y	0.70	61	26	61	26	y	0.58	49	35	49	35	y	0.45	15	18	15	18	y	0.68	40	19	40	19	y	0.62	30	18	30	18	y	0.61	33	21	33	21	y	0.54	53	46	53	46	y	0.66	31	16	31	16	y	0.33	56	114	56	114	y	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
known_NIR_19385	chr9	107536443	107544503	-	107536443	107544335	A5SS	ENSMUST00000010208.14	known	0.87	1067	156	1067	156	y	0.85	732	132	732	132	y	0.82	830	187	830	187	y	0.88	1688	240	1688	240	y	0.84	1641	306	1641	306	y	0.81	640	147	640	147	y	0.85	1104	200	1104	200	y	0.82	895	199	895	199	y	0.86	1087	182	1087	182	y	0.85	1677	295	1677	295	y	0.88	1010	140	1010	140	y	0.86	2124	341	2124	341	y	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
known_NIR_19386	chr9	107536443	107544503	-	107536443	107546052	A5SS	ENSMUST00000194895.6	known	0.98	1067	17	1067	17	y	0.99	732	10	732	10	y	0.98	830	14	830	14	y	0.98	1688	26	1688	26	y	0.98	1641	35	1641	35	y	0.97	640	18	640	18	y	0.98	1104	19	1104	19	y	0.98	895	18	895	18	y	0.98	1087	21	1087	21	y	0.97	1677	46	1677	46	y	0.98	1010	16	1010	16	y	0.95	2124	114	2124	114	y	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
known_NIR_19387	chr9	107536443	107545914	-	107536443	107542369	5pMXE	ENSMUST00000195843.2	known	0.03	1	28	1	28	n	0.00	0	18	0	18	n	0.00	0	28	0	28	n	0.03	2	61	2	61	y	0.00	0	49	0	49	n	0.00	0	15	0	15	n	0.05	2	40	2	40	y	0.03	1	30	1	30	n	0.03	1	33	1	33	n	0.00	0	53	0	53	n	0.06	2	31	2	31	y	0.20	14	56	14	56	y	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
known_NIR_19388	chr9	107536443	107545914	-	107536443	107544335	5pMXE	ENSMUST00000010208.14	known	0.01	1	156	1	156	n	0.00	0	132	0	132	n	0.00	0	187	0	187	n	0.01	2	240	2	240	y	0.00	0	306	0	306	n	0.00	0	147	0	147	n	0.01	2	200	2	200	y	0.01	1	199	1	199	n	0.01	1	182	1	182	n	0.00	0	295	0	295	n	0.01	2	140	2	140	y	0.04	14	341	14	341	y	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
known_NIR_19389	chr9	107536443	107545914	-	107536443	107544503	5pMXE	ENSMUST00000193932.6	known	0.00	1	1067	1	1067	n	0.00	0	732	0	732	n	0.00	0	830	0	830	n	0.00	2	1688	2	1688	y	0.00	0	1641	0	1641	n	0.00	0	640	0	640	n	0.00	2	1104	2	1104	y	0.00	1	895	1	895	n	0.00	1	1087	1	1087	n	0.00	0	1677	0	1677	n	0.00	2	1010	2	1010	y	0.01	14	2124	14	2124	y	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
known_NIR_19390	chr9	107536443	107546052	-	107536443	107544335	5pMXE	ENSMUST00000010208.14	known	0.10	17	156	17	156	y	0.07	10	132	10	132	y	0.07	14	187	14	187	y	0.10	26	240	26	240	y	0.10	35	306	35	306	y	0.11	18	147	18	147	y	0.09	19	200	19	200	y	0.08	18	199	18	199	y	0.10	21	182	21	182	y	0.13	46	295	46	295	y	0.10	16	140	16	140	y	0.25	114	341	114	341	y	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
known_NIR_19391	chr9	107536443;107536663	107536567;107542369	-	107536443	107542369	cassetteExon	ENSMUST00000195843.2	known	0.10	3.0	28	1;5	28	n	0.16	3.5	18	0;7	18	n	0.05	1.5	28	3;0	28	n	0.08	5.0	61	2;8	61	y	0.09	5.0	49	2;8	49	y	0.14	2.5	15	0;5	15	n	0.06	2.5	40	1;4	40	n	0.13	4.5	30	5;4	30	y	0.13	5.0	33	2;8	33	y	0.09	5.0	53	2;8	53	y	0.13	4.5	31	3;6	31	y	0.12	8.0	56	2;14	56	y	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
known_NIR_19392	chr9	107536443;107542676	107542369;107545914	-	107536443	107545914	cassetteExon	ENSMUST00000192990.6	known	0.93	14.0	1	28;0	1	n	1.00	9.0	0	18;0	0	n	1.00	14.0	0	28;0	0	n	0.94	30.5	2	61;0	2	n	1.00	24.5	0	49;0	0	n	1.00	7.5	0	15;0	0	n	0.91	20.0	2	40;0	2	n	0.94	15.0	1	30;0	1	n	0.94	16.5	1	33;0	1	n	1.00	26.5	0	53;0	0	n	0.89	15.5	2	31;0	2	n	0.67	29.0	14	56;2	14	y	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
known_NIR_19393	chr9	107536443;107545945	107545914;107546052	-	107536443	107546052	cassetteExon	ENSMUST00000194895.6	known	0.06	1.0	17	1;1	17	n	0.05	0.5	10	0;1	10	n	0.03	0.5	14	0;1	14	n	0.05	1.5	26	2;1	26	n	0.01	0.5	35	0;1	35	n	0.00	0.0	18	0;0	18	n	0.12	2.5	19	2;3	19	y	0.03	0.5	18	1;0	18	n	0.09	2.0	21	1;3	21	n	0.00	0.0	46	0;0	46	n	0.16	3.0	16	2;4	16	y	0.12	15.0	114	14;16	114	y	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
known_NIR_19394	chr9	107566978;107568647	107568555;107569367	-	107566978	107569367	cassetteExon	ENSMUST00000080560.9	known	0.00	0.0	3	0;0	3	n	0.00	0.0	2	0;0	2	n	0.26	3.5	10	5;2	10	y	0.14	0.5	3	1;0	3	n	0.10	1.0	9	0;2	9	n	0.20	1.5	6	3;0	6	n	0.20	2.5	10	2;3	10	y	0.18	1.5	7	0;3	7	n	0.00	0.0	1	0;0	1	n	0.33	1.0	2	1;1	2	n	0.33	1.0	2	1;1	2	n	0.40	2.0	3	0;4	3	n	ENSMUSG00000034684.13	Sema3f	chr9	protein_coding	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
known_NIR_19395	chr9	107626995	107627207	-	107626998	107627207	A3SS	ENSMUST00000182659.8	known	0.08	4	47	4	47	y	0.00	0	41	0	41	n	0.03	2	58	2	58	y	0.08	4	47	4	47	y	0.11	7	57	7	57	y	0.00	0	24	0	24	n	0.13	7	47	7	47	y	0.00	0	40	0	40	n	0.11	4	32	4	32	y	0.05	3	53	3	53	y	0.02	1	44	1	44	n	0.03	2	69	2	69	y	ENSMUSG00000032580.13	Rbm5	chr9	protein_coding	RNA binding motif protein 5
known_NIR_19396	chr9	107626998	107627662	-	107626998;107627291	107627207;107627662	ES	ENSMUST00000182659.8	known	0.00	0	45.5	0	47;44	n	0.16	6	30.5	6	41;20	y	0.10	6	55.5	6	58;53	y	0.07	3	42.0	3	47;37	y	0.02	1	60.0	1	57;63	n	0.20	6	24.5	6	24;25	y	0.04	2	47.5	2	47;48	y	0.08	3	35.5	3	40;31	y	0.09	3	29.0	3	32;26	y	0.14	8	50.0	8	53;47	y	0.11	5	40.0	5	44;36	y	0.14	9	54.5	9	69;40	y	ENSMUSG00000032580.13	Rbm5	chr9	protein_coding	RNA binding motif protein 5
known_NIR_19397	chr9	107626998	107627662	-	107627291	107627662	A3SS&ES	ENSMUST00000035199.13	known	0.00	0	44	0	44	n	0.23	6	20	6	20	y	0.10	6	53	6	53	y	0.07	3	37	3	37	y	0.02	1	63	1	63	n	0.19	6	25	6	25	y	0.04	2	48	2	48	y	0.09	3	31	3	31	y	0.10	3	26	3	26	y	0.15	8	47	8	47	y	0.12	5	36	5	36	y	0.18	9	40	9	40	y	ENSMUSG00000032580.13	Rbm5	chr9	protein_coding	RNA binding motif protein 5
known_NIR_19398	chr9	107631687	107634108	-	107631687;107633112	107633052;107634108	ES	ENSMUST00000182659.8	known	0.05	2	40.5	2	37;44	y	0.00	0	23.0	0	24;22	n	0.19	7	29.0	7	34;24	y	0.02	1	45.0	1	45;45	n	0.09	4	43.0	4	42;44	y	0.00	0	24.0	0	24;24	n	0.06	2	31.0	2	28;34	y	0.03	1	29.0	1	32;26	n	0.10	3	27.5	3	29;26	y	0.06	2	30.5	2	34;27	y	0.24	6	19.5	6	24;15	y	0.03	1	38.5	1	45;32	n	ENSMUSG00000032580.13	Rbm5	chr9	protein_coding	RNA binding motif protein 5
known_NIR_19399	chr9	107634191	107637521	-	107634191;107637048	107636975;107637521	ES	ENSMUST00000182659.8	known	0.05	1	19.0	1	21;17	n	0.08	1	12.0	1	13;11	n	0.09	2	20.0	2	12;28	y	0.10	3	27.0	3	31;23	y	0.08	3	34.5	3	33;36	y	0.11	2	15.5	2	18;13	y	0.09	2	21.5	2	19;24	y	0.13	3	20.0	3	18;22	y	0.20	3	12.0	3	11;13	y	0.00	0	21.0	0	22;20	n	0.06	1	17.0	1	21;13	n	0.05	1	20.5	1	15;26	n	ENSMUSG00000032580.13	Rbm5	chr9	protein_coding	RNA binding motif protein 5
known_NIR_19400	chr9	107634191	107637521	-	107637048	107637521	3pMXE	ENSMUST00000182007.8	known	0.06	1	17	1	17	n	0.08	1	11	1	11	n	0.07	2	28	2	28	y	0.12	3	23	3	23	y	0.08	3	36	3	36	y	0.13	2	13	2	13	y	0.08	2	24	2	24	y	0.12	3	22	3	22	y	0.19	3	13	3	13	y	0.00	0	20	0	20	n	0.07	1	13	1	13	n	0.04	1	26	1	26	n	ENSMUSG00000032580.13	Rbm5	chr9	protein_coding	RNA binding motif protein 5
known_NIR_19401	chr9	107646825	107647648	-	107646825	107648084	A5SS	ENSMUST00000182659.8	known	0.08	2	24	2	24	y	0.00	0	14	0	14	n	0.00	0	43	0	43	n	0.00	0	40	0	40	n	0.00	0	46	0	46	n	0.05	1	19	1	19	n	0.03	1	29	1	29	n	0.03	1	29	1	29	n	0.00	0	22	0	22	n	0.00	0	44	0	44	n	0.00	0	18	0	18	n	0.00	0	27	0	27	n	ENSMUSG00000032580.13	Rbm5	chr9	protein_coding	RNA binding motif protein 5
known_NIR_19402	chr9	107646825	107647751	-	107646825	107648084	A5SS	ENSMUST00000182659.8	known	0.00	0	24	0	24	n	0.07	1	14	1	14	n	0.07	3	43	3	43	y	0.00	0	40	0	40	n	0.12	6	46	6	46	y	0.14	3	19	3	19	y	0.17	6	29	6	29	y	0.00	0	29	0	29	n	0.08	2	22	2	22	y	0.04	2	44	2	44	y	0.00	0	18	0	18	n	0.10	3	27	3	27	y	ENSMUSG00000032580.13	Rbm5	chr9	protein_coding	RNA binding motif protein 5
known_NIR_19403	chr9	107646825	107647760	-	107646825	107648084	A5SS	ENSMUST00000182659.8	known	0.04	1	24	1	24	n	0.00	0	14	0	14	n	0.04	2	43	2	43	y	0.05	2	40	2	40	y	0.06	3	46	3	46	y	0.00	0	19	0	19	n	0.06	2	29	2	29	y	0.00	0	29	0	29	n	0.04	1	22	1	22	n	0.00	0	44	0	44	n	0.05	1	18	1	18	n	0.04	1	27	1	27	n	ENSMUSG00000032580.13	Rbm5	chr9	protein_coding	RNA binding motif protein 5
known_NIR_19404	chr9	107665097	107665307	-	107665063	107665307	A3SS	ENSMUST00000035201.13	known	0.00	0	51	0	51	n	0.00	0	29	0	29	n	0.00	0	45	0	45	n	0.00	0	37	0	37	n	0.07	3	38	3	38	y	0.00	0	28	0	28	n	0.00	0	45	0	45	n	0.00	0	17	0	17	n	0.00	0	40	0	40	n	0.00	0	50	0	50	n	0.00	0	33	0	33	n	0.00	0	41	0	41	n	ENSMUSG00000032582.15	Rbm6	chr9	protein_coding	RNA binding motif protein 6
known_NIR_19405	chr9	107728203	107729324	-	107728203	107737548	A5SS	ENSMUST00000195883.6	known	1.00	35	0	35	0	n	1.00	17	0	17	0	n	1.00	35	0	35	0	n	0.96	25	1	25	1	n	0.98	57	1	57	1	n	0.90	19	2	19	2	y	1.00	34	0	34	0	n	1.00	27	0	27	0	n	1.00	21	0	21	0	n	1.00	24	0	24	0	n	1.00	27	0	27	0	n	1.00	37	0	37	0	n	ENSMUSG00000032582.15	Rbm6	chr9	protein_coding	RNA binding motif protein 6
known_NIR_19406	chr9	107728203	107737548	-	107728203;107730602	107729324;107737548	ES	ENSMUST00000183032.8	known	0.00	0	22.5	0	35;10	n	0.00	0	10.5	0	17;4	n	0.00	0	22.0	0	35;9	n	0.06	1	17.0	1	25;9	n	0.03	1	35.0	1	57;13	n	0.16	2	10.5	2	19;2	y	0.00	0	23.0	0	34;12	n	0.00	0	20.0	0	27;13	n	0.00	0	13.0	0	21;5	n	0.00	0	20.0	0	24;16	n	0.00	0	16.5	0	27;6	n	0.00	0	25.5	0	37;14	n	ENSMUSG00000032582.15	Rbm6	chr9	protein_coding	RNA binding motif protein 6
known_NIR_19407	chr9	107728203	107737548	-	107728203;107730873	107729324;107737548	ES	ENSMUST00000035201.13	known	0.00	0	22.0	0	35;9	n	0.00	0	9.0	0	17;1	n	0.00	0	22.0	0	35;9	n	0.06	1	14.5	1	25;4	n	0.03	1	31.5	1	57;6	n	0.15	2	11.0	2	19;3	y	0.00	0	21.0	0	34;8	n	0.00	0	13.5	0	27;0	n	0.00	0	12.0	0	21;3	n	0.00	0	17.0	0	24;10	n	0.00	0	15.5	0	27;4	n	0.00	0	23.5	0	37;10	n	ENSMUSG00000032582.15	Rbm6	chr9	protein_coding	RNA binding motif protein 6
known_NIR_19408	chr9	107730602	107737548	-	107730873	107737548	A3SS	ENSMUST00000035201.13	known	0.53	10	9	10	9	y	0.80	4	1	4	1	n	0.50	9	9	9	9	y	0.69	9	4	9	4	y	0.68	13	6	13	6	y	0.40	2	3	2	3	n	0.60	12	8	12	8	y	1.00	13	0	13	0	n	0.62	5	3	5	3	n	0.62	16	10	16	10	y	0.60	6	4	6	4	y	0.58	14	10	14	10	y	ENSMUSG00000032582.15	Rbm6	chr9	protein_coding	RNA binding motif protein 6
known_NIR_19409	chr9	107737658	107749402	-	107737658	107749848	A5SS	ENSMUST00000035201.13	known	0.14	1	6	1	6	n	0.00	0	8	0	8	n	0.08	1	11	1	11	n	0.00	0	20	0	20	n	0.09	2	20	2	20	y	0.00	0	11	0	11	n	0.13	3	20	3	20	y	0.08	1	11	1	11	n	0.10	1	9	1	9	n	0.00	0	14	0	14	n	0.00	0	3	0	3	n	0.00	0	22	0	22	n	ENSMUSG00000032582.15	Rbm6	chr9	protein_coding	RNA binding motif protein 6
known_NIR_19410	chr9	107737658;107738928	107738822;107749848	-	107737658	107749848	cassetteExon	ENSMUST00000035201.13	known	0.14	1.0	6	0;2	6	n	0.16	1.5	8	3;0	8	n	0.29	4.5	11	3;6	11	y	0.00	0.0	20	0;0	20	n	0.13	3.0	20	3;3	20	y	0.08	1.0	11	2;0	11	n	0.13	3.0	20	3;3	20	y	0.19	2.5	11	4;1	11	n	0.14	1.5	9	1;2	9	n	0.12	2.0	14	4;0	14	n	0.14	0.5	3	1;0	3	n	0.08	2.0	22	3;1	22	n	ENSMUSG00000032582.15	Rbm6	chr9	protein_coding	RNA binding motif protein 6
known_NIR_19411	chr9	107853164	107853267	+	107853164	107853254	A3SS	ENSMUST00000035216.11	known	0.08	1	12	1	12	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.07	1	14	1	14	n	0.00	0	15	0	15	n	0.00	0	4	0	4	n	0.10	1	9	1	9	n	0.11	1	8	1	8	n	0.30	3	7	3	7	y	0.19	3	13	3	13	y	0.00	0	10	0	10	n	0.00	0	6	0	6	n	ENSMUSG00000032596.15	Uba7	chr9	protein_coding	ubiquitin-like modifier activating enzyme 7
known_NIR_19412	chr9	107858495	107858717	+	107858495	107858589	A3SS	ENSMUST00000035216.11	known	0.12	4	29	4	29	y	0.22	6	21	6	21	y	0.15	4	22	4	22	y	0.10	3	26	3	26	y	0.07	2	26	2	26	y	0.17	3	15	3	15	y	0.17	4	20	4	20	y	0.08	1	12	1	12	n	0.18	4	18	4	18	y	0.06	2	29	2	29	y	0.09	2	21	2	21	y	0.10	3	26	3	26	y	ENSMUSG00000032596.15	Uba7	chr9	protein_coding	ubiquitin-like modifier activating enzyme 7
known_NIR_19413	chr9	107860562	107860955	+	107860562	107861016	A3SS	ENSMUST00000035216.11	known	0.03	1	38	1	38	n	0.00	0	38	0	38	n	0.07	2	28	2	28	y	0.00	0	23	0	23	n	0.00	0	43	0	43	n	0.00	0	14	0	14	n	0.00	0	34	0	34	n	0.00	0	13	0	13	n	0.00	0	21	0	21	n	0.07	2	28	2	28	y	0.03	1	31	1	31	n	0.00	0	27	0	27	n	ENSMUSG00000032596.15	Uba7	chr9	protein_coding	ubiquitin-like modifier activating enzyme 7
known_NIR_19414	chr9	107879894	107901302	+	107880021	107901302	A5SS	ENSMUST00000035214.11	known	0.00	0	41	0	41	n	0.00	0	27	0	27	n	0.02	1	57	1	57	n	0.02	1	57	1	57	n	0.01	1	75	1	75	n	0.04	1	26	1	26	n	0.00	0	40	0	40	n	0.02	1	50	1	50	n	0.07	2	28	2	28	y	0.02	1	63	1	63	n	0.02	1	40	1	40	n	0.02	1	43	1	43	n	ENSMUSG00000032594.12	Ip6k1	chr9	protein_coding	inositol hexaphosphate kinase 1
known_NIR_19415	chr9	107901522	107909198	+	107901649	107909198	A5SS	ENSMUST00000176454.2	known	0.11	6	51	6	51	y	0.05	2	38	2	38	y	0.05	3	62	3	62	y	0.05	4	74	4	74	y	0.03	3	87	3	87	y	0.00	0	38	0	38	n	0.01	1	70	1	70	n	0.07	3	40	3	40	y	0.12	6	46	6	46	y	0.00	0	78	0	78	n	0.05	2	37	2	37	y	0.08	8	96	8	96	y	ENSMUSG00000093456.8	Gm20662	chr9	protein_coding	predicted gene 20662
known_NIR_19416	chr9	107922099	107922662	+	107922099	107922445	3pMXE	ENSMUST00000176454.2	known	0.81	38	9	38	9	y	0.88	28	4	28	4	y	0.90	62	7	62	7	y	0.86	59	10	59	10	y	0.68	67	31	67	31	y	0.72	21	8	21	8	y	0.69	34	15	34	15	y	0.86	37	6	37	6	y	0.85	33	6	33	6	y	0.79	60	16	60	16	y	0.57	21	16	21	16	y	0.75	50	17	50	17	y	ENSMUSG00000093456.8	Gm20662	chr9	protein_coding	predicted gene 20662
known_NIR_19417	chr9	107922099	107922662	+	107922512	107922662	A5SS	ENSMUST00000167159.9	known	0.69	38	17	38	17	y	0.76	28	9	28	9	y	0.90	62	7	62	7	y	0.78	59	17	59	17	y	0.69	67	30	67	30	y	0.62	21	13	21	13	y	0.62	34	21	34	21	y	0.73	37	14	37	14	y	0.77	33	10	33	10	y	0.76	60	19	60	19	y	0.58	21	15	21	15	y	0.68	50	23	50	23	y	ENSMUSG00000032594.12	Ip6k1	chr9	protein_coding	inositol hexaphosphate kinase 1
known_NIR_19418	chr9	107922099;107922512	107922445;107922662	+	107922099	107922662	cassetteExon	ENSMUST00000035214.11	known	0.25	13.0	38	9;17	38	y	0.19	6.5	28	4;9	28	y	0.10	7.0	62	7;7	62	y	0.19	13.5	59	10;17	59	y	0.31	30.5	67	31;30	67	y	0.33	10.5	21	8;13	21	y	0.35	18.0	34	15;21	34	y	0.21	10.0	37	6;14	37	y	0.20	8.0	33	6;10	33	y	0.23	17.5	60	16;19	60	y	0.42	15.5	21	16;15	21	y	0.29	20.0	50	17;23	50	y	ENSMUSG00000032594.12	Ip6k1	chr9	protein_coding	inositol hexaphosphate kinase 1
known_NIR_19419	chr9	107922221	107922662	+	107922512	107922662	A5SS	ENSMUST00000167159.9	known	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.11	2	17	2	17	y	0.00	0	30	0	30	n	0.00	0	13	0	13	n	0.00	0	21	0	21	n	0.07	1	14	1	14	n	0.00	0	10	0	10	n	0.00	0	19	0	19	n	0.00	0	15	0	15	n	0.08	2	23	2	23	y	ENSMUSG00000032594.12	Ip6k1	chr9	protein_coding	inositol hexaphosphate kinase 1
known_NIR_19420	chr9	107926619	107926711	+	107926560	107926711	A5SS	ENSMUST00000150700.2	known	0.50	4	4	4	4	n	0.70	7	3	7	3	y	0.55	12	10	12	10	y	0.62	10	6	10	6	y	0.50	9	9	9	9	y	0.81	17	4	17	4	y	0.79	11	3	11	3	y	0.64	7	4	7	4	y	-	-	-	-	-	-	0.31	5	11	5	11	y	0.57	8	6	8	6	y	0.86	12	2	12	2	y	ENSMUSG00000070284.11	Gmppb	chr9	protein_coding	GDP-mannose pyrophosphorylase B
known_NIR_19421	chr9	107933647	107933720	-	107933631	107933720	A3SS	ENSMUST00000160249.8	known	0.02	2	110	2	110	y	0.15	14	79	14	79	y	0.06	5	77	5	77	y	0.03	3	106	3	106	y	0.04	5	132	5	132	y	0.07	3	40	3	40	y	0.03	4	121	4	121	y	0.09	5	50	5	50	y	0.05	5	105	5	105	y	0.02	3	137	3	137	y	0.04	5	114	5	114	y	0.02	2	126	2	126	y	ENSMUSG00000041528.16	Rnf123	chr9	protein_coding	ring finger protein 123
known_NIR_19422	chr9	107940880	107941102	-	107940880	107941120	A5SS	ENSMUST00000160249.8	known	0.32	17	36	17	36	y	0.28	13	34	13	34	y	0.36	13	23	13	23	y	0.42	35	48	35	48	y	0.36	31	55	31	55	y	0.33	10	20	10	20	y	0.40	32	49	32	49	y	0.24	9	29	9	29	y	0.34	17	33	17	33	y	0.28	25	64	25	64	y	0.29	22	54	22	54	y	0.36	28	49	28	49	y	ENSMUSG00000041528.16	Rnf123	chr9	protein_coding	ring finger protein 123
known_NIR_19423	chr9	107955038	107956468	-	107955096	107956468	A3SS	ENSMUST00000178267.8	known	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.07	2	25	2	25	y	0.05	1	21	1	21	n	0.40	2	3	2	3	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.05	1	18	1	18	n	0.22	2	7	2	7	n	0.00	0	18	0	18	n	ENSMUSG00000041528.16	Rnf123	chr9	protein_coding	ring finger protein 123
known_NIR_19424	chr9	107955096	107956374	-	107955096	107955999	A5SS	ENSMUST00000162355.8	known	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.14	2	12	2	12	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	ENSMUSG00000041528.16	Rnf123	chr9	protein_coding	ring finger protein 123
known_NIR_19425	chr9	107955096	107956374	-	107955096	107956468	A5SS	ENSMUST00000178267.8	known	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	25	0	25	n	0.00	0	21	0	21	n	0.00	0	3	0	3	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.10	2	18	2	18	y	0.00	0	7	0	7	n	0.00	0	18	0	18	n	ENSMUSG00000041528.16	Rnf123	chr9	protein_coding	ring finger protein 123
known_NIR_19426	chr9	107955096	107956374	-	107955096	107956889	A5SS	ENSMUST00000161673.8	known	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.14	2	12	2	12	y	0.00	0	14	0	14	n	0.00	0	17	0	17	n	ENSMUSG00000041528.16	Rnf123	chr9	protein_coding	ring finger protein 123
known_NIR_19427	chr9	107955096	107956468	-	107955096	107955999	A5SS	ENSMUST00000162355.8	known	0.80	12	3	12	3	y	0.53	9	8	9	8	y	0.54	13	11	13	11	y	0.93	25	2	25	2	y	0.75	21	7	21	7	y	1.00	3	0	3	0	n	0.71	15	6	15	6	y	1.00	10	0	10	0	n	0.58	11	8	11	8	y	0.60	18	12	18	12	y	0.64	7	4	7	4	y	0.82	18	4	18	4	y	ENSMUSG00000041528.16	Rnf123	chr9	protein_coding	ring finger protein 123
known_NIR_19428	chr9	107955096	107956889	-	107955096	107955999	5pMXE	ENSMUST00000162355.8	known	0.75	9	3	9	3	y	0.38	5	8	5	8	y	0.42	8	11	8	11	y	0.82	9	2	9	2	y	0.53	8	7	8	7	y	1.00	5	0	5	0	n	0.65	11	6	11	6	y	1.00	4	0	4	0	n	0.64	14	8	14	8	y	0.50	12	12	12	12	y	0.78	14	4	14	4	y	0.81	17	4	17	4	y	ENSMUSG00000041528.16	Rnf123	chr9	protein_coding	ring finger protein 123
known_NIR_19429	chr9	107955096	107956889	-	107955096	107956468	5pMXE	ENSMUST00000178267.8	known	0.43	9	12	9	12	y	0.36	5	9	5	9	y	0.38	8	13	8	13	y	0.26	9	25	9	25	y	0.28	8	21	8	21	y	0.62	5	3	5	3	n	0.42	11	15	11	15	y	0.29	4	10	4	10	y	0.56	14	11	14	11	y	0.40	12	18	12	18	y	0.67	14	7	14	7	y	0.49	17	18	17	18	y	ENSMUSG00000041528.16	Rnf123	chr9	protein_coding	ring finger protein 123
known_NIR_19430	chr9	107957729	107958373	+	107957729	107958344	A3SS	ENSMUST00000035211.14	known	0.05	14	274	14	274	y	0.02	3	178	3	178	y	0.06	18	294	18	294	y	0.03	8	266	8	266	y	0.04	20	482	20	482	y	0.02	6	249	6	249	y	0.01	4	325	4	325	y	0.03	9	335	9	335	y	0.02	4	240	4	240	y	0.03	11	312	11	312	y	0.02	6	254	6	254	y	0.04	14	305	14	305	y	ENSMUSG00000032591.16	Mst1	chr9	protein_coding	macrophage stimulating 1 (hepatocyte growth factor-like)
known_NIR_19431	chr9	107959520	107959691	+	107959520	107959664	A3SS	ENSMUST00000035211.14	known	0.00	0	376	0	376	n	0.02	8	338	8	338	y	0.00	0	366	0	366	n	0.01	5	395	5	395	y	0.01	8	653	8	653	y	0.00	0	339	0	339	n	0.00	0	482	0	482	n	0.00	0	371	0	371	n	0.00	0	364	0	364	n	0.02	8	459	8	459	y	0.00	0	378	0	378	n	0.00	0	457	0	457	n	ENSMUSG00000032591.16	Mst1	chr9	protein_coding	macrophage stimulating 1 (hepatocyte growth factor-like)
known_NIR_19432	chr9	107961784	107961973	+	107961831	107961973	A5SS	ENSMUST00000035211.14	known	0.03	16	551	16	551	y	0.02	15	662	15	662	y	0.07	42	542	42	542	y	0.03	15	471	15	471	y	0.04	39	843	39	843	y	0.06	28	481	28	481	y	0.02	18	780	18	780	y	0.03	16	500	16	500	y	0.03	16	505	16	505	y	0.03	19	626	19	626	y	0.03	21	705	21	705	y	0.03	19	654	19	654	y	ENSMUSG00000032591.16	Mst1	chr9	protein_coding	macrophage stimulating 1 (hepatocyte growth factor-like)
known_NIR_19433	chr9	107964302	107964380	-	107964257	107964380	A3SS	ENSMUST00000081309.13	known	1.00	169	0	169	0	n	1.00	175	0	175	0	n	0.99	119	1	119	1	n	1.00	140	0	140	0	n	1.00	203	0	203	0	n	1.00	70	0	70	0	n	0.99	190	2	190	2	y	1.00	85	0	85	0	n	1.00	154	0	154	0	n	1.00	237	0	237	0	n	0.99	181	1	181	1	n	1.00	177	0	177	0	n	ENSMUSG00000032590.15	Apeh	chr9	protein_coding	acylpeptide hydrolase
known_NIR_19434	chr9	107965113	107965460	-	107965060	107965460	A3SS	ENSMUST00000081309.13	known	0.02	2	126	2	126	y	0.02	2	131	2	131	y	0.00	0	85	0	85	n	0.01	2	150	2	150	y	0.00	0	176	0	176	n	0.00	0	39	0	39	n	0.00	0	143	0	143	n	0.00	0	73	0	73	n	0.01	1	139	1	139	n	0.00	0	154	0	154	n	0.00	0	145	0	145	n	0.01	2	173	2	173	y	ENSMUSG00000032590.15	Apeh	chr9	protein_coding	acylpeptide hydrolase
known_NIR_19435	chr9	108095609	108130208	-	108095609	108130300	A5SS	ENSMUST00000191899.6	known	0.05	2	40	2	40	y	0.00	0	14	0	14	n	0.10	4	37	4	37	y	0.05	3	56	3	56	y	0.00	0	68	0	68	n	0.03	1	33	1	33	n	0.07	4	52	4	52	y	0.00	0	45	0	45	n	0.00	0	26	0	26	n	0.05	5	87	5	87	y	0.03	1	37	1	37	n	0.02	1	47	1	47	n	ENSMUSG00000039952.16	Dag1	chr9	protein_coding	dystroglycan 1
known_NIR_19436	chr9	108095609	108140979	-	108095609	108130300	A5SS&ES	ENSMUST00000080435.9	known	0.00	0	40	0	40	n	0.00	0	14	0	14	n	0.05	2	37	2	37	y	0.00	0	56	0	56	n	0.00	0	68	0	68	n	0.00	0	33	0	33	n	0.00	0	52	0	52	n	0.00	0	45	0	45	n	0.00	0	26	0	26	n	0.00	0	87	0	87	n	0.00	0	37	0	37	n	0.00	0	47	0	47	n	ENSMUSG00000039952.16	Dag1	chr9	protein_coding	dystroglycan 1
known_NIR_19437	chr9	108130356	108140680	-	108130356	108140824	A5SS	ENSMUST00000080435.9	known	0.19	5	22	5	22	y	0.00	0	7	0	7	n	0.26	8	23	8	23	y	0.18	9	40	9	40	y	0.27	17	45	17	45	y	0.38	10	16	10	16	y	0.21	10	37	10	37	y	0.17	7	34	7	34	y	0.08	2	23	2	23	y	0.25	15	44	15	44	y	0.30	8	19	8	19	y	0.25	11	33	11	33	y	ENSMUSG00000039952.16	Dag1	chr9	protein_coding	dystroglycan 1
known_NIR_19438	chr9	108130356	108140680	-	108130356	108140979	A5SS	ENSMUST00000191899.6	known	0.71	5	2	5	2	n	0.00	0	2	0	2	n	0.89	8	1	8	1	n	0.56	9	7	9	7	y	0.77	17	5	17	5	y	0.59	10	7	10	7	y	0.71	10	4	10	4	y	0.64	7	4	7	4	y	0.67	2	1	2	1	n	0.68	15	7	15	7	y	0.67	8	4	8	4	y	0.85	11	2	11	2	y	ENSMUSG00000039952.16	Dag1	chr9	protein_coding	dystroglycan 1
known_NIR_19439	chr9	108130356	108140824	-	108130356	108140979	A5SS	ENSMUST00000191899.6	known	0.92	22	2	22	2	y	0.78	7	2	7	2	n	0.96	23	1	23	1	n	0.85	40	7	40	7	y	0.90	45	5	45	5	y	0.70	16	7	16	7	y	0.90	37	4	37	4	y	0.89	34	4	34	4	y	0.96	23	1	23	1	n	0.86	44	7	44	7	y	0.83	19	4	19	4	y	0.94	33	2	33	2	y	ENSMUSG00000039952.16	Dag1	chr9	protein_coding	dystroglycan 1
known_NIR_19440	chr9	108174224	108174327	+	108174224	108174341	A3SS	ENSMUST00000160025.8	known	1.00	71	0	71	0	n	1.00	59	0	59	0	n	0.97	36	1	36	1	n	1.00	103	0	103	0	n	1.00	157	0	157	0	n	1.00	59	0	59	0	n	0.98	103	2	103	2	y	1.00	74	0	74	0	n	1.00	88	0	88	0	n	1.00	112	0	112	0	n	1.00	100	0	100	0	n	1.00	94	0	94	0	n	ENSMUSG00000032607.13	Amt	chr9	protein_coding	aminomethyltransferase
known_NIR_19441	chr9	108182579	108182921	-	108182627	108182921	A3SS	ENSMUST00000044725.9	known	0.82	59	13	59	13	y	0.86	25	4	25	4	y	0.83	49	10	49	10	y	0.93	65	5	65	5	y	0.86	70	11	70	11	y	0.87	41	6	41	6	y	0.82	78	17	78	17	y	0.84	49	9	49	9	y	0.80	51	13	51	13	y	0.87	58	9	58	9	y	0.81	56	13	56	13	y	0.92	59	5	59	5	y	ENSMUSG00000039461.13	Tcta	chr9	protein_coding	T cell leukemia translocation altered gene
known_NIR_19442	chr9	108184142	108192507	+	108183752	108192507	A5SS	ENSMUST00000007959.14	known	0.00	0	341	0	341	n	0.01	2	244	2	244	y	0.00	1	415	1	415	n	0.00	1	411	1	411	n	0.00	1	450	1	450	n	0.00	0	213	0	213	n	0.00	0	374	0	374	n	0.00	1	266	1	266	n	0.00	1	291	1	291	n	0.00	1	442	1	442	n	0.00	0	332	0	332	n	0.01	3	395	3	395	y	ENSMUSG00000007815.14	Rhoa	chr9	protein_coding	ras homolog family member A
known_NIR_19443	chr9	108184142	108192507	+	108184275	108192507	A5SS	ENSMUST00000194701.6	known	0.00	0	5	0	5	n	0.20	2	8	2	8	y	0.12	1	7	1	7	n	0.09	1	10	1	10	n	0.04	1	22	1	22	n	0.00	0	2	0	2	n	0.00	0	20	0	20	n	0.17	1	5	1	5	n	0.08	1	12	1	12	n	0.09	1	10	1	10	n	0.00	0	12	0	12	n	0.20	3	12	3	12	y	ENSMUSG00000007815.14	Rhoa	chr9	protein_coding	ras homolog family member A
known_NIR_19444	chr9	108184275	108192507	+	108183752	108192507	A5SS	ENSMUST00000007959.14	known	0.01	5	341	5	341	y	0.03	8	244	8	244	y	0.02	7	415	7	415	y	0.02	10	411	10	411	y	0.05	22	450	22	450	y	0.01	2	213	2	213	y	0.05	20	374	20	374	y	0.02	5	266	5	266	y	0.04	12	291	12	291	y	0.02	10	442	10	442	y	0.03	12	332	12	332	y	0.03	12	395	12	395	y	ENSMUSG00000007815.14	Rhoa	chr9	protein_coding	ras homolog family member A
known_NIR_19445	chr9	108216757	108216979	+	108216757	108216976	A3SS	ENSMUST00000082429.8	known	0.03	240	7289	240	7289	y	0.03	222	7870	222	7870	y	0.03	107	3736	107	3736	y	0.03	256	8633	256	8633	y	0.03	220	7372	220	7372	y	0.03	68	2277	68	2277	y	0.03	249	7862	249	7862	y	0.03	65	2030	65	2030	y	0.03	259	7526	259	7526	y	0.03	377	12170	377	12170	y	0.03	302	9553	302	9553	y	0.03	283	8083	283	8083	y	ENSMUSG00000063856.9	Gpx1	chr9	protein_coding	glutathione peroxidase 1
known_NIR_19446	chr9	108240097	108243960	+	108240097;108243169	108243029;108243960	ES	ENSMUST00000035237.12	known	0.25	19	58.5	19	64;53	y	0.23	12	41.0	12	42;40	y	0.15	16	88.5	16	110;67	y	0.22	21	72.5	21	69;76	y	0.25	27	81.5	27	99;64	y	0.27	15	41.5	15	43;40	y	0.24	25	77.5	25	88;67	y	0.20	13	50.5	13	62;39	y	0.20	20	78.0	20	88;68	y	0.22	28	99.5	28	107;92	y	0.14	11	65.5	11	69;62	y	0.22	22	76.5	22	75;78	y	ENSMUSG00000032612.15	Usp4	chr9	protein_coding	ubiquitin specific peptidase 4 (proto-oncogene)
known_NIR_19447	chr9	108261354	108261581	+	108261354	108261596	A3SS	ENSMUST00000035237.12	known	0.00	0	139	0	139	n	0.00	0	114	0	114	n	0.02	3	129	3	129	y	0.00	0	134	0	134	n	0.01	1	175	1	175	n	0.01	1	74	1	74	n	0.01	1	158	1	158	n	0.01	1	82	1	82	n	0.00	0	131	0	131	n	0.00	1	219	1	219	n	0.02	3	147	3	147	y	0.00	0	195	0	195	n	ENSMUSG00000032612.15	Usp4	chr9	protein_coding	ubiquitin specific peptidase 4 (proto-oncogene)
known_NIR_19448	chr9	108262155	108268179	+	108262155;108265579	108265476;108268179	ES	ENSMUST00000035237.12	known	0.01	1	158.5	1	160;157	n	0.01	1	164.5	1	137;192	n	0.00	0	155.0	0	133;177	n	0.01	1	168.5	1	168;169	n	0.00	1	221.5	1	215;228	n	0.00	0	71.5	0	65;78	n	0.00	1	227.0	1	222;232	n	0.01	1	70.5	1	72;69	n	0.00	0	160.5	0	161;160	n	0.00	1	240.0	1	233;247	n	0.01	2	195.0	2	191;199	y	0.03	6	207.5	6	196;219	y	ENSMUSG00000032612.15	Usp4	chr9	protein_coding	ubiquitin specific peptidase 4 (proto-oncogene)
known_NIR_19449	chr9	108326984	108327478	-	108326984	108328075	A5SS	ENSMUST00000193286.6	known	0.45	9	11	9	11	y	0.42	5	7	5	7	y	0.70	7	3	7	3	y	1.00	9	0	9	0	n	0.39	7	11	7	11	y	0.45	5	6	5	6	y	0.46	11	13	11	13	y	0.56	5	4	5	4	n	0.62	5	3	5	3	n	0.43	6	8	6	8	y	0.59	10	7	10	7	y	0.20	3	12	3	12	y	ENSMUSG00000032609.13	Klhdc8b	chr9	protein_coding	kelch domain containing 8B
known_NIR_19450	chr9	108332110	108335876	-	108332110	108332593	5pMXE	ENSMUST00000193331.2	known	0.12	1	7	1	7	n	0.15	2	11	2	11	y	0.22	2	7	2	7	n	0.00	0	8	0	8	n	0.00	0	21	0	21	n	0.00	0	7	0	7	n	0.14	2	12	2	12	y	0.11	1	8	1	8	n	0.00	0	10	0	10	n	0.12	2	15	2	15	y	0.33	3	6	3	6	n	0.00	0	10	0	10	n	ENSMUSG00000032609.13	Klhdc8b	chr9	protein_coding	kelch domain containing 8B
known_NIR_19451	chr9	108332110	108335876	-	108332110;108332774	108332593;108335876	ES	ENSMUST00000193286.6	known	0.09	1	10.5	1	7;14	n	0.17	2	10.0	2	11;9	y	0.14	2	12.5	2	7;18	y	0.00	0	8.0	0	8;8	n	0.00	0	20.0	0	21;19	n	0.00	0	8.0	0	7;9	n	0.13	2	13.0	2	12;14	y	0.15	1	5.5	1	8;3	n	0.00	0	9.0	0	10;8	n	0.12	2	14.5	2	15;14	y	0.40	3	4.5	3	6;3	y	0.00	0	9.5	0	10;9	n	ENSMUSG00000032609.13	Klhdc8b	chr9	protein_coding	kelch domain containing 8B
known_NIR_19452	chr9	108332110	108335876	-	108332774	108335876	A3SS&ES	ENSMUST00000193895.6	known	0.07	1	14	1	14	n	0.18	2	9	2	9	y	0.10	2	18	2	18	y	0.00	0	8	0	8	n	0.00	0	19	0	19	n	0.00	0	9	0	9	n	0.12	2	14	2	14	y	0.25	1	3	1	3	n	0.00	0	8	0	8	n	0.12	2	14	2	14	y	0.50	3	3	3	3	n	0.00	0	9	0	9	n	ENSMUSG00000032609.13	Klhdc8b	chr9	protein_coding	kelch domain containing 8B
known_NIR_19453	chr9	108336035	108338010	-	108336035	108336424	A5SS&ES	ENSMUST00000193286.6	known	0.46	6	7	6	7	y	0.50	6	6	6	6	y	0.37	7	12	7	12	y	0.32	11	23	11	23	y	0.26	9	25	9	25	y	0.31	4	9	4	9	y	0.31	8	18	8	18	y	0.20	1	4	1	4	n	0.25	4	12	4	12	y	0.22	5	18	5	18	y	0.36	4	7	4	7	y	0.31	8	18	8	18	y	ENSMUSG00000032609.13	Klhdc8b	chr9	protein_coding	kelch domain containing 8B
known_NIR_19454	chr9	108336035	108338010	-	108336035;108336508	108336424;108338010	ES	ENSMUST00000193895.6	known	0.55	6	5.0	6	7;3	y	0.50	6	6.0	6	6;6	y	0.41	7	10.0	7	12;8	y	0.37	11	18.5	11	23;14	y	0.28	9	23.0	9	25;21	y	0.35	4	7.5	4	9;6	y	0.30	8	18.5	8	18;19	y	0.25	1	3.0	1	4;2	n	0.29	4	10.0	4	12;8	y	0.21	5	19.0	5	18;20	y	0.47	4	4.5	4	7;2	y	0.37	8	13.5	8	18;9	y	ENSMUSG00000032609.13	Klhdc8b	chr9	protein_coding	kelch domain containing 8B
known_NIR_19455	chr9	108336508	108338015	-	108336508	108338010	A5SS	ENSMUST00000193895.6	known	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.05	1	21	1	21	n	0.25	2	6	2	6	n	0.00	0	19	0	19	n	0.00	0	2	0	2	n	0.27	3	8	3	8	y	0.00	0	20	0	20	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	ENSMUSG00000032609.13	Klhdc8b	chr9	protein_coding	kelch domain containing 8B
known_NIR_19456	chr9	108337787	108340137	+	108337816	108340137	A5SS	ENSMUST00000061209.7	known	0.00	0	17	0	17	n	0.03	1	30	1	30	n	0.06	2	33	2	33	y	0.06	2	30	2	30	y	0.00	0	18	0	18	n	0.00	0	21	0	21	n	0.00	0	38	0	38	n	0.00	0	21	0	21	n	0.00	0	16	0	16	n	0.00	0	36	0	36	n	0.06	1	17	1	17	n	0.00	0	27	0	27	n	ENSMUSG00000049305.7	Ccdc71	chr9	protein_coding	coiled-coil domain containing 71
known_NIR_19457	chr9	108338793	108340137	+	108337816	108340137	A5SS	ENSMUST00000061209.7	known	0.00	0	17	0	17	n	0.00	0	30	0	30	n	0.00	0	33	0	33	n	0.06	2	30	2	30	y	0.00	0	18	0	18	n	0.00	0	21	0	21	n	0.03	1	38	1	38	n	0.00	0	21	0	21	n	0.00	0	16	0	16	n	0.00	0	36	0	36	n	0.00	0	17	0	17	n	0.00	0	27	0	27	n	ENSMUSG00000049305.7	Ccdc71	chr9	protein_coding	coiled-coil domain containing 71
known_NIR_19458	chr9	108370682	108370760	+	108370682	108370763	A3SS	ENSMUST00000006854.13	known	0.82	50	11	50	11	y	0.97	32	1	32	1	n	0.76	45	14	45	14	y	0.91	50	5	50	5	y	0.84	72	14	72	14	y	0.86	30	5	30	5	y	0.83	49	10	49	10	y	0.65	17	9	17	9	y	0.85	35	6	35	6	y	0.84	38	7	38	7	y	0.82	23	5	23	5	y	0.74	46	16	46	16	y	ENSMUSG00000006676.17	Usp19	chr9	protein_coding	ubiquitin specific peptidase 19
known_NIR_19459	chr9	108370912	108371215	+	108371062	108371215	A5SS	ENSMUST00000006854.13	known	0.00	0	31	0	31	n	0.00	0	30	0	30	n	0.00	0	45	0	45	n	0.06	4	62	4	62	y	0.12	7	53	7	53	y	0.17	4	19	4	19	y	0.11	5	41	5	41	y	0.05	2	36	2	36	y	0.19	6	26	6	26	y	0.13	7	46	7	46	y	0.00	0	34	0	34	n	0.13	8	52	8	52	y	ENSMUSG00000006676.17	Usp19	chr9	protein_coding	ubiquitin specific peptidase 19
known_NIR_19460	chr9	108371886	108372011	+	108371897	108372011	A5SS	ENSMUST00000006854.13	known	0.06	4	64	4	64	y	0.00	0	39	0	39	n	0.04	3	79	3	79	y	0.00	0	73	0	73	n	0.03	2	72	2	72	y	0.00	0	38	0	38	n	0.03	2	63	2	63	y	0.04	2	46	2	46	y	0.00	0	46	0	46	n	0.05	3	52	3	52	y	0.10	5	47	5	47	y	0.05	3	57	3	57	y	ENSMUSG00000006676.17	Usp19	chr9	protein_coding	ubiquitin specific peptidase 19
known_NIR_19461	chr9	108372126	108372239	+	108372126	108372233	A3SS	ENSMUST00000006854.13	known	0.30	8	19	8	19	y	0.21	5	19	5	19	y	0.11	5	41	5	41	y	0.20	9	35	9	35	y	0.34	17	33	17	33	y	0.03	1	30	1	30	n	0.17	7	34	7	34	y	0.21	4	15	4	15	y	0.18	5	23	5	23	y	0.22	13	47	13	47	y	0.20	5	20	5	20	y	0.19	8	35	8	35	y	ENSMUSG00000006676.17	Usp19	chr9	protein_coding	ubiquitin specific peptidase 19
known_NIR_19462	chr9	108375235	108375331	+	108375235	108375322	A3SS	ENSMUST00000006854.13	known	0.00	0	50	0	50	n	0.00	0	50	0	50	n	0.06	5	74	5	74	y	0.09	6	58	6	58	y	0.08	7	84	7	84	y	0.07	3	37	3	37	y	0.00	0	101	0	101	n	0.08	5	61	5	61	y	0.00	0	51	0	51	n	0.00	0	84	0	84	n	0.05	4	72	4	72	y	0.03	3	90	3	90	y	ENSMUSG00000006676.17	Usp19	chr9	protein_coding	ubiquitin specific peptidase 19
known_NIR_19463	chr9	108377468	108379039	+	108377468	108378393	3pMXE	ENSMUST00000006854.13	known	0.71	37	15	37	15	y	0.63	40	23	40	23	y	0.61	37	24	37	24	y	0.79	38	10	38	10	y	0.65	40	22	40	22	y	0.73	24	9	24	9	y	0.66	61	32	61	32	y	0.65	39	21	39	21	y	0.68	36	17	36	17	y	0.70	55	24	55	24	y	0.67	50	25	50	25	y	0.58	32	23	32	23	y	ENSMUSG00000006676.17	Usp19	chr9	protein_coding	ubiquitin specific peptidase 19
known_NIR_19464	chr9	108388409	108388731	+	108388409	108388530	3pMXE	ENSMUST00000208162.2	known	0.00	0	106	0	106	n	0.00	0	74	0	74	n	0.02	3	142	3	142	y	0.00	0	88	0	88	n	0.00	0	120	0	120	n	0.00	0	78	0	78	n	0.00	0	106	0	106	n	0.00	0	81	0	81	n	0.00	0	78	0	78	n	0.00	0	101	0	101	n	0.00	0	92	0	92	n	0.00	0	99	0	99	n	ENSMUSG00000032604.17	Qars	chr9	protein_coding	glutaminyl-tRNA synthetase
known_NIR_19465	chr9	108388409	108388731	+	108388409;108388615	108388530;108388731	ES	ENSMUST00000006838.16	known	0.00	0	119.0	0	106;132	n	0.00	0	80.5	0	74;87	n	0.02	3	150.0	3	142;158	y	0.00	0	112.0	0	88;136	n	0.00	0	151.0	0	120;182	n	0.00	0	93.5	0	78;109	n	0.00	0	120.0	0	106;134	n	0.00	0	90.0	0	81;99	n	0.00	0	88.5	0	78;99	n	0.00	0	108.5	0	101;116	n	0.00	0	89.5	0	92;87	n	0.00	0	123.0	0	99;147	n	ENSMUSG00000032604.17	Qars	chr9	protein_coding	glutaminyl-tRNA synthetase
known_NIR_19466	chr9	108389768	108389899	+	108389781	108389899	A5SS	ENSMUST00000006838.16	known	0.02	3	118	3	118	y	0.02	2	83	2	83	y	0.02	4	185	4	185	y	0.00	0	109	0	109	n	0.00	0	137	0	137	n	0.00	0	94	0	94	n	0.01	1	116	1	116	n	0.03	3	104	3	104	y	0.00	0	94	0	94	n	0.00	0	141	0	141	n	0.00	0	91	0	91	n	0.00	0	159	0	159	n	ENSMUSG00000032604.17	Qars	chr9	protein_coding	glutaminyl-tRNA synthetase
known_NIR_19467	chr9	108390577	108390923	+	108390577	108390868	A3SS	ENSMUST00000006838.16	known	0.00	0	111	0	111	n	0.02	2	113	2	113	y	0.02	4	180	4	180	y	0.00	0	131	0	131	n	0.00	0	168	0	168	n	0.00	0	106	0	106	n	0.01	2	157	2	157	y	0.00	0	91	0	91	n	0.04	3	80	3	80	y	0.00	0	145	0	145	n	0.00	0	129	0	129	n	0.00	0	149	0	149	n	ENSMUSG00000032604.17	Qars	chr9	protein_coding	glutaminyl-tRNA synthetase
known_NIR_19468	chr9	108392028	108392166	+	108392072	108392166	A5SS	ENSMUST00000006838.16	known	0.00	0	176	0	176	n	0.01	2	216	2	216	y	0.00	0	234	0	234	n	0.00	0	155	0	155	n	0.00	1	231	1	231	n	0.00	0	113	0	113	n	0.00	0	237	0	237	n	0.00	0	159	0	159	n	0.00	0	180	0	180	n	0.00	0	221	0	221	n	0.01	2	214	2	214	y	0.00	0	195	0	195	n	ENSMUSG00000032604.17	Qars	chr9	protein_coding	glutaminyl-tRNA synthetase
known_NIR_19469	chr9	108392043	108392166	+	108392072	108392166	A5SS	ENSMUST00000006838.16	known	0.00	0	176	0	176	n	0.00	1	216	1	216	n	0.00	1	234	1	234	n	0.00	0	155	0	155	n	0.00	0	231	0	231	n	0.02	2	113	2	113	y	0.01	2	237	2	237	y	0.00	0	159	0	159	n	0.00	0	180	0	180	n	0.01	2	221	2	221	y	0.00	0	214	0	214	n	0.00	0	195	0	195	n	ENSMUSG00000032604.17	Qars	chr9	protein_coding	glutaminyl-tRNA synthetase
known_NIR_19470	chr9	108392232	108392319	+	108392232	108392306	A3SS	ENSMUST00000006838.16	known	0.00	0	165	0	165	n	0.00	0	240	0	240	n	0.00	0	253	0	253	n	0.00	0	158	0	158	n	0.00	0	228	0	228	n	0.02	2	123	2	123	y	0.02	4	240	4	240	y	0.00	0	122	0	122	n	0.00	0	155	0	155	n	0.00	0	210	0	210	n	0.00	0	198	0	198	n	0.00	0	167	0	167	n	ENSMUSG00000032604.17	Qars	chr9	protein_coding	glutaminyl-tRNA synthetase
known_NIR_19471	chr9	108392232	108392331	+	108392232	108392306	A3SS	ENSMUST00000006838.16	known	0.00	0	165	0	165	n	0.00	0	240	0	240	n	0.00	0	253	0	253	n	0.00	0	158	0	158	n	0.00	0	228	0	228	n	0.00	0	123	0	123	n	0.02	5	240	5	240	y	0.00	0	122	0	122	n	0.00	0	155	0	155	n	0.03	7	210	7	210	y	0.03	7	198	7	198	y	0.00	0	167	0	167	n	ENSMUSG00000032604.17	Qars	chr9	protein_coding	glutaminyl-tRNA synthetase
known_NIR_19472	chr9	108394439	108405788	+	108394439;108396025	108395966;108405788	ES	ENSMUST00000195513.6	known	0.39	11	17.5	11	3;32	y	0.46	8	9.5	8	1;18	n	0.51	19	18.0	19	3;33	y	0.69	19	8.5	19	0;17	n	0.45	17	20.5	17	5;36	y	0.34	8	15.5	8	4;27	y	0.38	12	19.5	12	4;35	y	0.41	9	13.0	9	0;26	n	0.64	18	10.0	18	2;18	y	0.34	9	17.5	9	4;31	y	0.48	10	11.0	10	6;16	y	0.51	19	18.5	19	4;33	y	ENSMUSG00000006673.15	Qrich1	chr9	protein_coding	glutamine-rich 1
known_NIR_19473	chr9	108394439	108405788	+	108394451	108405788	A5SS	ENSMUST00000195563.6	known	0.85	11	2	11	2	y	0.80	8	2	8	2	y	0.76	19	6	19	6	y	0.79	19	5	19	5	y	0.77	17	5	17	5	y	0.89	8	1	8	1	n	0.67	12	6	12	6	y	0.69	9	4	9	4	y	0.90	18	2	18	2	y	0.60	9	6	9	6	y	0.91	10	1	10	1	n	0.95	19	1	19	1	n	ENSMUSG00000006673.15	Qrich1	chr9	protein_coding	glutamine-rich 1
known_NIR_19474	chr9	108394439	108405788	+	108396025	108405788	A5SS&ES	ENSMUST00000192932.6	known	0.26	11	32	11	32	y	0.31	8	18	8	18	y	0.37	19	33	19	33	y	0.53	19	17	19	17	y	0.32	17	36	17	36	y	0.23	8	27	8	27	y	0.26	12	35	12	35	y	0.26	9	26	9	26	y	0.50	18	18	18	18	y	0.23	9	31	9	31	y	0.38	10	16	10	16	y	0.37	19	33	19	33	y	ENSMUSG00000006673.15	Qrich1	chr9	protein_coding	glutamine-rich 1
known_NIR_19475	chr9	108394451	108405788	+	108396025	108405788	A5SS&ES	ENSMUST00000195513.6	known	0.06	2	32	2	32	y	0.10	2	18	2	18	y	0.15	6	33	6	33	y	0.23	5	17	5	17	y	0.12	5	36	5	36	y	0.04	1	27	1	27	n	0.15	6	35	6	35	y	0.13	4	26	4	26	y	0.10	2	18	2	18	y	0.16	6	31	6	31	y	0.06	1	16	1	16	n	0.03	1	33	1	33	n	ENSMUSG00000006673.15	Qrich1	chr9	protein_coding	glutamine-rich 1
known_NIR_19476	chr9	108394451;108396025	108395966;108405788	+	108394451	108405788	cassetteExon	ENSMUST00000195563.6	known	0.89	16.0	2	0;32	2	n	0.83	10.0	2	2;18	2	y	0.73	16.5	6	0;33	6	n	0.63	8.5	5	0;17	5	n	0.78	18.0	5	0;36	5	n	0.93	13.5	1	0;27	1	n	0.76	19.0	6	3;35	6	y	0.76	13.0	4	0;26	4	n	0.83	10.0	2	2;18	2	y	0.73	16.0	6	1;31	6	n	0.89	8.0	1	0;16	1	n	0.94	16.5	1	0;33	1	n	ENSMUSG00000006673.15	Qrich1	chr9	protein_coding	glutamine-rich 1
known_NIR_19477	chr9	108395175	108395966	+	108394439	108395966	A5SS	ENSMUST00000195513.6	known	0.70	7	3	7	3	y	0.89	8	1	8	1	n	0.83	15	3	15	3	y	1.00	4	0	4	0	n	0.81	21	5	21	5	y	0.80	16	4	16	4	y	0.64	7	4	7	4	y	1.00	11	0	11	0	n	0.60	3	2	3	2	n	0.73	11	4	11	4	y	0.14	1	6	1	6	n	0.75	12	4	12	4	y	ENSMUSG00000006673.15	Qrich1	chr9	protein_coding	glutamine-rich 1
known_NIR_19478	chr9	108395175	108395966	+	108394451	108395966	A5SS	ENSMUST00000192932.6	known	1.00	7	0	7	0	n	0.80	8	2	8	2	y	1.00	15	0	15	0	n	1.00	4	0	4	0	n	1.00	21	0	21	0	n	1.00	16	0	16	0	n	0.70	7	3	7	3	y	1.00	11	0	11	0	n	0.60	3	2	3	2	n	0.92	11	1	11	1	n	1.00	1	0	1	0	n	1.00	12	0	12	0	n	ENSMUSG00000006673.15	Qrich1	chr9	protein_coding	glutamine-rich 1
known_NIR_19479	chr9	108395175	108395966	+	108395175	108395902	A3SS	ENSMUST00000192331.2	known	0.70	7	3	7	3	y	1.00	8	0	8	0	n	1.00	15	0	15	0	n	0.50	4	4	4	4	n	0.95	21	1	21	1	n	0.89	16	2	16	2	y	0.88	7	1	7	1	n	0.73	11	4	11	4	y	0.75	3	1	3	1	n	0.85	11	2	11	2	y	0.25	1	3	1	3	n	1.00	12	0	12	0	n	ENSMUSG00000006673.15	Qrich1	chr9	protein_coding	glutamine-rich 1
known_NIR_19480	chr9	108406117	108418887	+	108406117	108410786	3pMXE	ENSMUST00000195563.6	known	0.07	2	26	2	26	y	0.11	3	24	3	24	y	0.03	2	68	2	68	y	0.04	2	51	2	51	y	0.00	0	46	0	46	n	0.00	0	37	0	37	n	0.09	4	41	4	41	y	0.00	0	34	0	34	n	0.00	0	32	0	32	n	0.11	6	48	6	48	y	0.02	1	43	1	43	n	0.02	1	64	1	64	n	ENSMUSG00000006673.15	Qrich1	chr9	protein_coding	glutamine-rich 1
known_NIR_19481	chr9	108406117	108418887	+	108406117;108411817	108410786;108418887	ES	ENSMUST00000193258.6	known	0.04	2	45.5	2	26;65	y	0.07	3	37.5	3	24;51	y	0.02	2	89.5	2	68;111	y	0.03	2	69.0	2	51;87	y	0.00	0	69.5	0	46;93	n	0.00	0	46.5	0	37;56	n	0.06	4	66.0	4	41;91	y	0.00	0	49.0	0	34;64	n	0.00	0	48.5	0	32;65	n	0.09	6	58.5	6	48;69	y	0.02	1	54.0	1	43;65	n	0.01	1	67.0	1	64;70	n	ENSMUSG00000006673.15	Qrich1	chr9	protein_coding	glutamine-rich 1
known_NIR_19482	chr9	108411817	108418887	+	108406117	108418887	A5SS	ENSMUST00000194385.2	known	0.97	65	2	65	2	y	0.94	51	3	51	3	y	0.98	111	2	111	2	y	0.98	87	2	87	2	y	1.00	93	0	93	0	n	1.00	56	0	56	0	n	0.96	91	4	91	4	y	1.00	64	0	64	0	n	1.00	65	0	65	0	n	0.92	69	6	69	6	y	0.98	65	1	65	1	n	0.99	70	1	70	1	n	ENSMUSG00000006673.15	Qrich1	chr9	protein_coding	glutamine-rich 1
known_NIR_19483	chr9	108440890;108441183	108441112;108441834	+	108440890	108441834	cassetteExon	ENSMUST00000081111.14	known	0.03	3.0	87	4;2	87	y	0.03	3.5	119	3;4	119	y	0.03	4.5	134	5;4	134	y	0.01	1.5	117	3;0	117	n	0.02	3.0	145	5;1	145	n	0.02	1.5	65	2;1	65	n	0.08	13.0	142	13;13	142	y	0.02	1.5	79	2;1	79	n	0.07	8.5	122	7;10	122	y	0.02	3.0	169	2;4	169	y	0.05	5.5	113	9;2	113	y	0.03	4.5	156	5;4	156	y	ENSMUSG00000062867.14	Impdh2	chr9	protein_coding	inosine monophosphate dehydrogenase 2
known_NIR_19484	chr9	108443458	108443755	-	108443458;108443606	108443540;108443755	ES	ENSMUST00000074208.6	known	0.00	0	83.5	0	89;78	n	0.00	0	101.5	0	105;98	n	0.00	0	41.0	0	49;33	n	0.00	0	88.0	0	90;86	n	0.00	0	90.0	0	91;89	n	0.00	0	51.0	0	54;48	n	0.02	2	106.5	2	114;99	y	0.02	1	53.0	1	57;49	n	0.00	0	72.0	0	67;77	n	0.04	4	99.0	4	106;92	y	0.00	0	108.5	0	123;94	n	0.00	0	68.0	0	84;52	n	ENSMUSG00000070283.5	Ndufaf3	chr9	protein_coding	NADH:ubiquinone oxidoreductase complex assembly factor 3
known_NIR_19485	chr9	108447644	108447821	+	108447644	108447763	A3SS	ENSMUST00000019183.14	known	0.08	7	86	7	86	y	0.06	5	83	5	83	y	0.10	10	92	10	92	y	0.04	4	98	4	98	y	0.05	6	112	6	112	y	0.06	4	67	4	67	y	0.08	8	98	8	98	y	0.05	4	72	4	72	y	0.06	6	95	6	95	y	0.01	2	133	2	133	y	0.00	0	102	0	102	n	0.06	7	102	7	102	y	ENSMUSG00000019039.15	Dalrd3	chr9	protein_coding	DALR anticodon binding domain containing 3
known_NIR_19486	chr9	108448372	108448635	+	108448372	108448645	A3SS	ENSMUST00000019183.14	known	0.04	5	127	5	127	y	0.05	6	112	6	112	y	0.06	5	84	5	84	y	0.04	4	87	4	87	y	0.04	6	144	6	144	y	0.04	3	70	3	70	y	0.07	9	127	9	127	y	0.04	3	79	3	79	y	0.03	3	108	3	108	y	0.06	10	148	10	148	y	0.06	7	115	7	115	y	0.06	9	139	9	139	y	ENSMUSG00000019039.15	Dalrd3	chr9	protein_coding	DALR anticodon binding domain containing 3
known_NIR_19487	chr9	108449660	108449724	+	108449660	108449750	A3SS	ENSMUST00000019183.14	known	0.01	1	126	1	126	n	0.02	3	162	3	162	y	0.04	4	92	4	92	y	0.03	4	120	4	120	y	0.00	0	129	0	129	n	0.03	2	56	2	56	y	0.01	1	138	1	138	n	0.00	0	65	0	65	n	0.00	0	123	0	123	n	0.00	0	184	0	184	n	0.00	0	128	0	128	n	0.02	3	134	3	134	y	ENSMUSG00000019039.15	Dalrd3	chr9	protein_coding	DALR anticodon binding domain containing 3
known_NIR_19488	chr9	108482671	108484487	-	108482616	108484487	A3SS	ENSMUST00000013338.14	known	0.00	0	84	0	84	n	0.01	1	71	1	71	n	0.03	5	157	5	157	y	0.01	1	77	1	77	n	0.05	8	140	8	140	y	0.00	0	81	0	81	n	0.01	1	138	1	138	n	0.00	0	74	0	74	n	0.02	1	64	1	64	n	0.02	3	121	3	121	y	0.03	3	96	3	96	y	0.05	6	112	6	112	y	ENSMUSG00000064145.13	Arih2	chr9	protein_coding	ariadne RBR E3 ubiquitin protein ligase 2
known_NIR_19489	chr9	108482903	108484487	-	108482616	108484487	A3SS	ENSMUST00000013338.14	known	0.00	0	84	0	84	n	0.00	0	71	0	71	n	0.00	0	157	0	157	n	0.00	0	77	0	77	n	0.01	2	140	2	140	y	0.00	0	81	0	81	n	0.00	0	138	0	138	n	0.00	0	74	0	74	n	0.00	0	64	0	64	n	0.00	0	121	0	121	n	0.00	0	96	0	96	n	0.00	0	112	0	112	n	ENSMUSG00000064145.13	Arih2	chr9	protein_coding	ariadne RBR E3 ubiquitin protein ligase 2
known_NIR_19490	chr9	108482903	108484487	-	108482671	108484487	A3SS	ENSMUST00000194073.6	known	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.20	2	8	2	8	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	ENSMUSG00000064145.13	Arih2	chr9	protein_coding	ariadne RBR E3 ubiquitin protein ligase 2
known_NIR_19491	chr9	108497325	108506488	-	108497325	108526428	A5SS	ENSMUST00000193197.6	known	1.00	12	0	12	0	n	1.00	9	0	9	0	n	1.00	15	0	15	0	n	1.00	18	0	18	0	n	1.00	16	0	16	0	n	1.00	11	0	11	0	n	0.92	22	2	22	2	y	1.00	7	0	7	0	n	1.00	12	0	12	0	n	1.00	21	0	21	0	n	0.91	10	1	10	1	n	1.00	27	0	27	0	n	ENSMUSG00000064145.13	Arih2	chr9	protein_coding	ariadne RBR E3 ubiquitin protein ligase 2
known_NIR_19492	chr9	108497325	108521225	-	108497325	108506488	5pMXE	ENSMUST00000195741.6	known	0.65	22	12	22	12	y	0.74	26	9	26	9	y	0.80	61	15	61	15	y	0.61	28	18	28	18	y	0.69	36	16	36	16	y	0.72	29	11	29	11	y	0.62	36	22	36	22	y	0.77	24	7	24	7	y	0.67	24	12	24	12	y	0.55	26	21	26	21	y	0.74	29	10	29	10	y	0.62	44	27	44	27	y	ENSMUSG00000064145.13	Arih2	chr9	protein_coding	ariadne RBR E3 ubiquitin protein ligase 2
known_NIR_19493	chr9	108497325	108521225	-	108497325	108526428	A5SS	ENSMUST00000193197.6	known	1.00	22	0	22	0	n	1.00	26	0	26	0	n	1.00	61	0	61	0	n	1.00	28	0	28	0	n	1.00	36	0	36	0	n	1.00	29	0	29	0	n	0.95	36	2	36	2	y	1.00	24	0	24	0	n	1.00	24	0	24	0	n	1.00	26	0	26	0	n	0.97	29	1	29	1	n	1.00	44	0	44	0	n	ENSMUSG00000064145.13	Arih2	chr9	protein_coding	ariadne RBR E3 ubiquitin protein ligase 2
known_NIR_19494	chr9	108497325;108506533	108506488;108521225	-	108497325	108521225	cassetteExon	ENSMUST00000013338.14	known	0.40	14.5	22	12;17	22	y	0.27	9.5	26	9;10	26	y	0.20	15.5	61	15;16	61	y	0.37	16.5	28	18;15	28	y	0.30	15.5	36	16;15	36	y	0.30	12.5	29	11;14	29	y	0.37	21.0	36	22;20	36	y	0.21	6.5	24	7;6	24	y	0.30	10.5	24	12;9	24	y	0.44	20.5	26	21;20	26	y	0.25	9.5	29	10;9	29	y	0.42	31.5	44	27;36	44	y	ENSMUSG00000064145.13	Arih2	chr9	protein_coding	ariadne RBR E3 ubiquitin protein ligase 2
known_NIR_19495	chr9	108521564	108522132	-	108521567	108522132	A3SS	ENSMUST00000013338.14	known	0.41	17	24	17	24	y	0.43	15	20	15	20	y	0.36	47	84	47	84	y	0.18	11	50	11	50	y	0.32	25	54	25	54	y	0.32	17	36	17	36	y	0.30	26	62	26	62	y	0.23	14	48	14	48	y	0.31	8	18	8	18	y	0.39	27	43	27	43	y	0.49	20	21	20	21	y	0.32	24	51	24	51	y	ENSMUSG00000064145.13	Arih2	chr9	protein_coding	ariadne RBR E3 ubiquitin protein ligase 2
known_NIR_19496	chr9	108522193	108526428	-	108497325	108526428	A3SS	ENSMUST00000193197.6	known	1.00	26	0	26	0	n	1.00	23	0	23	0	n	1.00	69	0	69	0	n	1.00	43	0	43	0	n	1.00	70	0	70	0	n	1.00	36	0	36	0	n	0.97	61	2	61	2	y	1.00	47	0	47	0	n	1.00	20	0	20	0	n	1.00	43	0	43	0	n	0.97	35	1	35	1	n	1.00	47	0	47	0	n	ENSMUSG00000064145.13	Arih2	chr9	protein_coding	ariadne RBR E3 ubiquitin protein ligase 2
known_NIR_19497	chr9	108673595	108673854	+	108673595	108673740	A3SS	ENSMUST00000195580.6	known	0.75	3	1	3	1	n	1.00	4	0	4	0	n	0.50	2	2	2	2	n	1.00	5	0	5	0	n	1.00	4	0	4	0	n	0.00	0	2	0	2	n	0.67	4	2	4	2	n	0.00	0	3	0	3	n	0.40	2	3	2	3	n	0.50	1	1	1	1	n	1.00	6	0	6	0	n	0.70	7	3	7	3	y	ENSMUSG00000032599.13	Ip6k2	chr9	protein_coding	inositol hexaphosphate kinase 2
known_NIR_19498	chr9	108673595	108673854	+	108673595	108675470	A3SS	ENSMUST00000195514.6	known	0.05	3	60	3	60	y	0.09	4	42	4	42	y	0.04	2	53	2	53	y	0.06	5	80	5	80	y	0.05	4	78	4	78	y	0.00	0	45	0	45	n	0.04	4	96	4	96	y	0.00	0	44	0	44	n	0.04	2	54	2	54	y	0.01	1	79	1	79	n	0.08	6	65	6	65	y	0.07	7	99	7	99	y	ENSMUSG00000032599.13	Ip6k2	chr9	protein_coding	inositol hexaphosphate kinase 2
known_NIR_19499	chr9	108673595	108674483	+	108673595	108673854	A3SS&ES	ENSMUST00000192226.6	known	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.44	4	5	4	5	n	0.43	3	4	3	4	n	1.00	3	0	3	0	n	0.33	2	4	2	4	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.50	1	1	1	1	n	0.45	5	6	5	6	y	0.00	0	7	0	7	n	ENSMUSG00000032599.13	Ip6k2	chr9	protein_coding	inositol hexaphosphate kinase 2
known_NIR_19500	chr9	108673595	108675470	+	108673595	108673740	3pMXE	ENSMUST00000195580.6	known	0.98	60	1	60	1	n	1.00	42	0	42	0	n	0.96	53	2	53	2	y	1.00	80	0	80	0	n	1.00	78	0	78	0	n	0.96	45	2	45	2	y	0.98	96	2	96	2	y	0.94	44	3	44	3	y	0.95	54	3	54	3	y	0.99	79	1	79	1	n	1.00	65	0	65	0	n	0.97	99	3	99	3	y	ENSMUSG00000032599.13	Ip6k2	chr9	protein_coding	inositol hexaphosphate kinase 2
known_NIR_19501	chr9	108673595	108675470	+	108673595	108674406	3pMXE	ENSMUST00000192307.6	known	0.97	60	2	60	2	y	1.00	42	0	42	0	n	0.95	53	3	53	3	y	0.98	80	2	80	2	y	0.97	78	2	78	2	y	0.96	45	2	45	2	y	0.98	96	2	96	2	y	0.98	44	1	44	1	n	0.98	54	1	54	1	n	0.98	79	2	79	2	y	0.98	65	1	65	1	n	0.99	99	1	99	1	n	ENSMUSG00000032599.13	Ip6k2	chr9	protein_coding	inositol hexaphosphate kinase 2
known_NIR_19502	chr9	108673595	108675470	+	108673595	108674483	3pMXE	ENSMUST00000194875.6	known	0.98	60	1	60	1	n	1.00	42	0	42	0	n	0.98	53	1	53	1	n	0.95	80	4	80	4	y	0.96	78	3	78	3	y	0.94	45	3	45	3	y	0.98	96	2	96	2	y	0.98	44	1	44	1	n	0.98	54	1	54	1	n	0.99	79	1	79	1	n	0.93	65	5	65	5	y	1.00	99	0	99	0	n	ENSMUSG00000032599.13	Ip6k2	chr9	protein_coding	inositol hexaphosphate kinase 2
known_NIR_19503	chr9	108673595;108673771	108673740;108673854	+	108673595	108673854	cassetteExon	ENSMUST00000192226.6	known	0.33	1.5	3	1;2	3	n	0.00	0.0	4	0;0	4	n	0.33	1.0	2	2;0	2	n	0.00	0.0	5	0;0	5	n	0.00	0.0	4	0;0	4	n	1.00	1.5	0	2;1	0	n	0.33	2.0	4	2;2	4	n	1.00	2.0	0	3;1	0	n	0.56	2.5	2	3;2	2	n	0.50	1.0	1	1;1	1	n	0.00	0.0	6	0;0	6	n	0.26	2.5	7	3;2	7	y	ENSMUSG00000032599.13	Ip6k2	chr9	protein_coding	inositol hexaphosphate kinase 2
known_NIR_19504	chr9	108673595;108673982	108673740;108674406	+	108673595	108674406	cassetteExon	ENSMUST00000192307.6	known	0.50	2.0	2	1;3	2	n	1.00	3.5	0	0;7	0	n	0.45	2.5	3	2;3	3	n	0.50	2.0	2	0;4	2	n	0.64	3.5	2	0;7	2	n	0.43	1.5	2	2;1	2	n	0.67	4.0	2	2;6	2	y	0.60	1.5	1	3;0	1	n	0.80	4.0	1	3;5	1	n	0.50	2.0	2	1;3	2	n	0.71	2.5	1	0;5	1	n	0.87	6.5	1	3;10	1	n	ENSMUSG00000032599.13	Ip6k2	chr9	protein_coding	inositol hexaphosphate kinase 2
known_NIR_19505	chr9	108673595;108673982	108673854;108674406	+	108673595	108674406	cassetteExon	ENSMUST00000192307.6	known	0.60	3.0	2	3;3	2	n	1.00	5.5	0	4;7	0	n	0.45	2.5	3	2;3	3	n	0.69	4.5	2	5;4	2	y	0.73	5.5	2	4;7	2	y	0.20	0.5	2	0;1	2	n	0.71	5.0	2	4;6	2	y	0.00	0.0	1	0;0	1	n	0.78	3.5	1	2;5	1	n	0.50	2.0	2	1;3	2	n	0.85	5.5	1	6;5	1	n	0.89	8.5	1	7;10	1	n	ENSMUSG00000032599.13	Ip6k2	chr9	protein_coding	inositol hexaphosphate kinase 2
known_NIR_19506	chr9	108673595;108675377	108675309;108675470	+	108673595	108675470	cassetteExon	ENSMUST00000195514.6	known	0.04	2.5	60	1;4	60	n	0.01	0.5	42	1;0	42	n	0.04	2.0	53	0;4	53	n	0.05	4.0	80	3;5	80	y	0.08	6.5	78	3;10	78	y	0.10	5.0	45	3;7	45	y	0.05	5.5	96	4;7	96	y	0.01	0.5	44	0;1	44	n	0.00	0.0	54	0;0	54	n	0.02	2.0	79	2;2	79	y	0.04	2.5	65	1;4	65	n	0.02	2.0	99	0;4	99	n	ENSMUSG00000032599.13	Ip6k2	chr9	protein_coding	inositol hexaphosphate kinase 2
known_NIR_19507	chr9	108765855	108766135	+	108765855	108766084	A3SS	ENSMUST00000026743.14	known	0.00	0	347	0	347	n	0.00	0	298	0	298	n	0.00	0	373	0	373	n	0.01	5	457	5	457	y	0.00	0	485	0	485	n	0.00	0	231	0	231	n	0.00	0	520	0	520	n	0.00	0	225	0	225	n	0.00	0	399	0	399	n	0.00	0	600	0	600	n	0.00	0	440	0	440	n	0.00	0	550	0	550	n	ENSMUSG00000025651.15	Uqcrc1	chr9	protein_coding	ubiquinol-cytochrome c reductase core protein 1
known_NIR_19508	chr9	108765937	108766084	+	108765855	108766084	A5SS	ENSMUST00000026743.14	known	0.00	0	347	0	347	n	0.00	0	298	0	298	n	0.01	2	373	2	373	y	0.00	1	457	1	457	n	0.00	0	485	0	485	n	0.02	4	231	4	231	y	0.00	2	520	2	520	y	0.01	2	225	2	225	y	0.00	0	399	0	399	n	0.00	1	600	1	600	n	0.00	2	440	2	440	y	0.00	0	550	0	550	n	ENSMUSG00000025651.15	Uqcrc1	chr9	protein_coding	ubiquinol-cytochrome c reductase core protein 1
known_NIR_19509	chr9	108771238	108773758	+	108771238	108773112	A3SS&ES	ENSMUST00000195738.2	known	0.00	2	641	2	641	y	0.00	1	590	1	590	n	0.00	0	618	0	618	n	0.00	0	773	0	773	n	0.00	0	781	0	781	n	0.00	0	340	0	340	n	0.00	0	853	0	853	n	0.00	0	368	0	368	n	0.00	0	677	0	677	n	0.00	2	1019	2	1019	y	0.00	0	825	0	825	n	0.00	0	968	0	968	n	ENSMUSG00000025651.15	Uqcrc1	chr9	protein_coding	ubiquinol-cytochrome c reductase core protein 1
known_NIR_19510	chr9	108771238	108773758	+	108771238;108773241	108773112;108773758	ES	ENSMUST00000026743.14	known	0.00	2	638.5	2	641;636	y	0.00	1	584.0	1	590;578	n	0.00	0	616.5	0	618;615	n	0.00	0	762.5	0	773;752	n	0.00	0	807.0	0	781;833	n	0.00	0	320.0	0	340;300	n	0.00	0	869.0	0	853;885	n	0.00	0	363.0	0	368;358	n	0.00	0	669.0	0	677;661	n	0.00	2	1008.5	2	1019;998	y	0.00	0	875.0	0	825;925	n	0.00	0	950.0	0	968;932	n	ENSMUSG00000025651.15	Uqcrc1	chr9	protein_coding	ubiquinol-cytochrome c reductase core protein 1
known_NIR_19511	chr9	108773241	108773704	+	108773241	108773758	A3SS	ENSMUST00000026743.14	known	0.00	0	636	0	636	n	0.01	3	578	3	578	y	0.00	0	615	0	615	n	0.00	0	752	0	752	n	0.00	1	833	1	833	n	0.00	1	300	1	300	n	0.00	0	885	0	885	n	0.00	0	358	0	358	n	0.00	0	661	0	661	n	0.00	1	998	1	998	n	0.00	0	925	0	925	n	0.00	0	932	0	932	n	ENSMUSG00000025651.15	Uqcrc1	chr9	protein_coding	ubiquinol-cytochrome c reductase core protein 1
known_NIR_19512	chr9	108870094	108880435	+	108870094	108880432	A3SS	ENSMUST00000112059.10	known	0.71	12	5	12	5	y	1.00	7	0	7	0	n	0.73	37	14	37	14	y	0.94	15	1	15	1	n	0.69	9	4	9	4	y	0.52	11	10	11	10	y	0.68	13	6	13	6	y	0.71	15	6	15	6	y	1.00	5	0	5	0	n	0.67	4	2	4	2	n	0.40	2	3	2	3	n	1.00	11	0	11	0	n	ENSMUSG00000025647.17	Shisa5	chr9	protein_coding	shisa family member 5
known_NIR_19513	chr9	108884075	108885046	+	108880521	108885046	A5SS	ENSMUST00000112059.10	known	0.71	39	16	39	16	y	0.78	31	9	31	9	y	0.54	38	32	38	32	y	0.82	41	9	41	9	y	0.82	62	14	62	14	y	0.72	38	15	38	15	y	0.76	44	14	44	14	y	0.67	14	7	14	7	y	0.76	28	9	28	9	y	0.86	57	9	57	9	y	0.80	43	11	43	11	y	0.63	24	14	24	14	y	ENSMUSG00000025647.17	Shisa5	chr9	protein_coding	shisa family member 5
known_NIR_19514	chr9	108884331	108885046	+	108880521	108885046	A5SS	ENSMUST00000112059.10	known	0.00	0	16	0	16	n	0.18	2	9	2	9	y	0.09	3	32	3	32	y	0.00	0	9	0	9	n	0.07	1	14	1	14	n	0.00	0	15	0	15	n	0.12	2	14	2	14	y	0.12	1	7	1	7	n	0.18	2	9	2	9	y	0.25	3	9	3	9	y	0.08	1	11	1	11	n	0.18	3	14	3	14	y	ENSMUSG00000025647.17	Shisa5	chr9	protein_coding	shisa family member 5
known_NIR_19515	chr9	108884331	108885046	+	108884075	108885046	A5SS	ENSMUST00000154184.5	known	0.00	0	39	0	39	n	0.06	2	31	2	31	y	0.07	3	38	3	38	y	0.00	0	41	0	41	n	0.02	1	62	1	62	n	0.00	0	38	0	38	n	0.04	2	44	2	44	y	0.07	1	14	1	14	n	0.07	2	28	2	28	y	0.05	3	57	3	57	y	0.02	1	43	1	43	n	0.11	3	24	3	24	y	ENSMUSG00000025647.17	Shisa5	chr9	protein_coding	shisa family member 5
known_NIR_19516	chr9	108887996	108888257	-	108887996	108888715	A5SS	ENSMUST00000061973.5	known	0.79	15	4	15	4	y	0.79	19	5	19	5	y	0.86	18	3	18	3	y	0.84	21	4	21	4	y	0.89	24	3	24	3	y	1.00	20	0	20	0	n	0.79	19	5	19	5	y	0.69	9	4	9	4	y	0.79	19	5	19	5	y	0.79	30	8	30	8	y	0.82	28	6	28	6	y	0.78	28	8	28	8	y	ENSMUSG00000049734.10	Trex1	chr9	protein_coding	three prime repair exonuclease 1
known_NIR_19517	chr9	108890266	108890600	-	108890269	108890600	A3SS	ENSMUST00000160217.8	known	0.09	1	10	1	10	n	0.00	0	23	0	23	n	0.04	1	26	1	26	n	0.00	0	11	0	11	n	0.13	5	33	5	33	y	0.00	0	14	0	14	n	0.04	1	23	1	23	n	0.06	1	17	1	17	n	0.19	4	17	4	17	y	0.12	4	28	4	28	y	0.03	1	32	1	32	n	0.14	3	19	3	19	y	ENSMUSG00000025646.10	Atrip	chr9	protein_coding	ATR interacting protein
known_NIR_19518	chr9	108890736	108894196	-	108890736	108894281	A5SS	ENSMUST00000160217.8	known	0.94	16	1	16	1	n	0.82	9	2	9	2	y	1.00	20	0	20	0	n	0.79	11	3	11	3	y	0.95	19	1	19	1	n	0.73	8	3	8	3	y	1.00	17	0	17	0	n	0.82	9	2	9	2	y	1.00	7	0	7	0	n	0.80	16	4	16	4	y	0.93	25	2	25	2	y	0.94	15	1	15	1	n	ENSMUSG00000025646.10	Atrip	chr9	protein_coding	ATR interacting protein
known_NIR_19519	chr9	108901805	108902727	-	108901805	108902823	A5SS	ENSMUST00000160217.8	known	0.25	3	9	3	9	y	0.50	2	2	2	2	n	0.20	4	16	4	16	y	0.00	0	7	0	7	n	0.06	1	15	1	15	n	0.14	2	12	2	12	y	0.17	2	10	2	10	y	0.15	2	11	2	11	y	0.06	1	17	1	17	n	0.00	0	15	0	15	n	0.00	0	17	0	17	n	0.25	3	9	3	9	y	ENSMUSG00000025646.10	Atrip	chr9	protein_coding	ATR interacting protein
known_NIR_19520	chr9	108911157	108911395	-	108911157;108911294	108911239;108911395	ES	ENSMUST00000167504.3	known	0.01	3	406.0	3	534;278	y	0.01	4	424.0	4	546;302	y	0.01	4	488.5	4	631;346	y	0.01	2	347.5	2	455;240	y	0.00	0	516.5	0	644;389	n	0.00	1	322.5	1	406;239	n	0.00	1	538.5	1	685;392	n	0.01	3	324.5	3	422;227	y	0.00	0	322.0	0	396;248	n	0.00	2	482.5	2	621;344	y	0.00	0	416.0	0	532;300	n	0.00	1	413.5	1	534;293	n	ENSMUSG00000091537.3	Tma7	chr9	protein_coding	translational machinery associated 7
known_NIR_19521	chr9	108911157	108911395	-	108911294	108911395	A3SS	ENSMUST00000192442.2	known	0.01	3	278	3	278	y	0.01	4	302	4	302	y	0.01	4	346	4	346	y	0.01	2	240	2	240	y	0.00	0	389	0	389	n	0.00	1	239	1	239	n	0.00	1	392	1	392	n	0.01	3	227	3	227	y	0.00	0	248	0	248	n	0.01	2	344	2	344	y	0.00	0	300	0	300	n	0.00	1	293	1	293	n	ENSMUSG00000091537.3	Tma7	chr9	protein_coding	translational machinery associated 7
known_NIR_19522	chr9	108925270	108928339	+	108924713	108928339	A5SS	ENSMUST00000072093.13	known	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	16	0	16	n	0.00	0	4	0	4	n	0.09	1	10	1	10	n	0.23	3	10	3	10	y	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	16	0	16	n	ENSMUSG00000053646.14	Plxnb1	chr9	protein_coding	plexin B1
known_NIR_19523	chr9	109661875	109662264	+	109661956	109662264	A5SS	ENSMUST00000200005.5	known	0.62	8	5	8	5	y	0.75	6	2	6	2	n	0.83	5	1	5	1	n	0.50	4	4	4	4	n	0.67	8	4	8	4	y	0.67	2	1	2	1	n	0.12	2	14	2	14	y	0.00	0	5	0	5	n	0.64	7	4	7	4	y	0.74	14	5	14	5	y	0.27	3	8	3	8	y	1.00	4	0	4	0	n	ENSMUSG00000032478.15	Nme6	chr9	protein_coding	NME/NM23 nucleoside diphosphate kinase 6
known_NIR_19524	chr9	109662363	109664386	+	109662363	109670544	A3SS	ENSMUST00000196797.5	known	1.00	54	0	54	0	n	1.00	60	0	60	0	n	0.99	216	2	216	2	y	1.00	39	0	39	0	n	1.00	92	0	92	0	n	0.98	107	2	107	2	y	1.00	51	0	51	0	n	1.00	90	0	90	0	n	1.00	35	0	35	0	n	1.00	72	0	72	0	n	1.00	61	0	61	0	n	1.00	77	0	77	0	n	ENSMUSG00000032478.15	Nme6	chr9	protein_coding	NME/NM23 nucleoside diphosphate kinase 6
known_NIR_19525	chr9	109662363	109668676	+	109662363	109664386	3pMXE	ENSMUST00000196762.5	known	0.13	8	54	8	54	y	0.22	17	60	17	60	y	0.13	32	216	32	216	y	0.15	7	39	7	39	y	0.11	11	92	11	92	y	0.09	10	107	10	107	y	0.16	10	51	10	51	y	0.12	12	90	12	90	y	0.10	4	35	4	35	y	0.16	14	72	14	72	y	0.12	8	61	8	61	y	0.08	7	77	7	77	y	ENSMUSG00000032478.15	Nme6	chr9	protein_coding	NME/NM23 nucleoside diphosphate kinase 6
known_NIR_19526	chr9	109662363	109668676	+	109662363;109664482	109664386;109668676	ES	ENSMUST00000200005.5	known	0.12	8	60.0	8	54;66	y	0.20	17	67.5	17	60;75	y	0.15	32	186.5	32	216;157	y	0.14	7	43.5	7	39;48	y	0.12	11	83.5	11	92;75	y	0.09	10	98.0	10	107;89	y	0.14	10	59.0	10	51;67	y	0.12	12	84.5	12	90;79	y	0.08	4	44.5	4	35;54	y	0.17	14	68.0	14	72;64	y	0.11	8	63.5	8	61;66	y	0.08	7	77.5	7	77;78	y	ENSMUSG00000032478.15	Nme6	chr9	protein_coding	NME/NM23 nucleoside diphosphate kinase 6
known_NIR_19527	chr9	109662363	109670544	+	109662363	109668676	A3SS&ES	ENSMUST00000200660.5	known	0.00	0	8	0	8	n	0.00	0	17	0	17	n	0.06	2	32	2	32	y	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.17	2	10	2	10	y	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	ENSMUSG00000032478.15	Nme6	chr9	protein_coding	NME/NM23 nucleoside diphosphate kinase 6
known_NIR_19528	chr9	109662363;109668778	109668676;109670544	+	109662363	109670544	cassetteExon	ENSMUST00000196797.5	known	1.00	36.0	0	8;64	0	n	1.00	52.0	0	17;87	0	n	0.98	95.0	2	32;158	2	y	1.00	24.5	0	7;42	0	n	1.00	52.5	0	11;94	0	n	0.97	62.5	2	10;115	2	y	1.00	38.0	0	10;66	0	n	1.00	47.0	0	12;82	0	n	1.00	32.0	0	4;60	0	n	1.00	40.5	0	14;67	0	n	1.00	38.0	0	8;68	0	n	1.00	38.0	0	7;69	0	n	ENSMUSG00000032478.15	Nme6	chr9	protein_coding	NME/NM23 nucleoside diphosphate kinase 6
known_NIR_19529	chr9	109668778	109670544	+	109668778	109671520	A3SS	ENSMUST00000200660.5	known	1.00	64	0	64	0	n	1.00	87	0	87	0	n	0.99	158	1	158	1	n	1.00	42	0	42	0	n	1.00	94	0	94	0	n	0.99	115	1	115	1	n	1.00	66	0	66	0	n	1.00	82	0	82	0	n	1.00	60	0	60	0	n	1.00	67	0	67	0	n	0.97	68	2	68	2	y	1.00	69	0	69	0	n	ENSMUSG00000032478.15	Nme6	chr9	protein_coding	NME/NM23 nucleoside diphosphate kinase 6
known_NIR_19530	chr9	109668778	109670995	+	109668778	109670544	A3SS&ES	ENSMUST00000197627.5	known	0.02	1	64	1	64	n	0.01	1	87	1	87	n	0.00	0	158	0	158	n	0.00	0	42	0	42	n	0.00	0	94	0	94	n	0.01	1	115	1	115	n	0.00	0	66	0	66	n	0.01	1	82	1	82	n	0.05	3	60	3	60	y	0.01	1	67	1	67	n	0.00	0	68	0	68	n	0.00	0	69	0	69	n	ENSMUSG00000032478.15	Nme6	chr9	protein_coding	NME/NM23 nucleoside diphosphate kinase 6
known_NIR_19531	chr9	109668778	109670995	+	109668778;109670583	109670544;109670995	ES	ENSMUST00000200005.5	known	0.01	1	68.0	1	64;72	n	0.01	1	91.0	1	87;95	n	0.00	0	186.5	0	158;215	n	0.00	0	43.0	0	42;44	n	0.00	0	99.0	0	94;104	n	0.01	1	125.5	1	115;136	n	0.00	0	81.5	0	66;97	n	0.01	1	96.5	1	82;111	n	0.04	3	65.0	3	60;70	y	0.01	1	72.0	1	67;77	n	0.00	0	71.5	0	68;75	n	0.00	0	71.5	0	69;74	n	ENSMUSG00000032478.15	Nme6	chr9	protein_coding	NME/NM23 nucleoside diphosphate kinase 6
known_NIR_19532	chr9	109670583	109671030	+	109670583	109670995	A3SS	ENSMUST00000200005.5	known	0.00	0	72	0	72	n	0.01	1	95	1	95	n	0.02	5	215	5	215	y	0.00	0	44	0	44	n	0.00	0	104	0	104	n	0.00	0	136	0	136	n	0.00	0	97	0	97	n	0.02	2	111	2	111	y	0.01	1	70	1	70	n	0.00	0	77	0	77	n	0.00	0	75	0	75	n	0.00	0	74	0	74	n	ENSMUSG00000032478.15	Nme6	chr9	protein_coding	NME/NM23 nucleoside diphosphate kinase 6
known_NIR_19533	chr9	109706302	109708299	+	109706302;109707378	109707336;109708299	ES	ENSMUST00000094324.8	known	0.00	0	7.0	0	7;7	n	0.00	0	4.0	0	4;4	n	0.00	0	12.5	0	14;11	n	0.00	0	7.5	0	8;7	n	0.00	0	4.0	0	3;5	n	0.00	0	1.5	0	3;0	n	0.00	0	7.5	0	7;8	n	0.33	2	4.0	2	2;6	y	-	-	-	-	-	-	0.00	0	5.5	0	3;8	n	0.00	0	4.0	0	3;5	n	0.00	0	2.0	0	1;3	n	ENSMUSG00000032477.15	Cdc25a	chr9	protein_coding	cell division cycle 25A
known_NIR_19534	chr9	109856860	109856967	+	109856860	109861167	A3SS	ENSMUST00000035055.15	known	0.00	0	24	0	24	n	0.00	0	8	0	8	n	0.03	1	37	1	37	n	0.17	3	15	3	15	y	0.09	4	41	4	41	y	0.16	3	16	3	16	y	0.05	2	42	2	42	y	0.04	1	24	1	24	n	0.22	2	7	2	7	n	0.09	2	20	2	20	y	0.36	4	7	4	7	y	0.20	4	16	4	16	y	ENSMUSG00000032479.16	Map4	chr9	protein_coding	microtubule-associated protein 4
known_NIR_19535	chr9	109865923	109866356	+	109865923	109892085	A3SS	ENSMUST00000035055.15	known	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	32	0	32	n	0.00	0	26	0	26	n	0.00	0	28	0	28	n	0.00	0	19	0	19	n	0.39	11	17	11	17	y	0.00	0	14	0	14	n	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.00	0	16	0	16	n	0.00	0	21	0	21	n	ENSMUSG00000032479.16	Map4	chr9	protein_coding	microtubule-associated protein 4
known_NIR_19536	chr9	109865923	109892085	+	109865923;109869535	109866356;109892085	ES	ENSMUST00000163190.8	known	1.00	10	0.0	10	0;0	n	1.00	14	0.0	14	0;0	n	1.00	32	0.0	32	0;0	n	1.00	26	0.0	26	0;0	n	1.00	28	0.0	28	0;0	n	1.00	19	0.0	19	0;0	n	0.47	17	19.5	17	11;28	y	1.00	14	0.0	14	0;0	n	1.00	14	0.0	14	0;0	n	1.00	17	0.0	17	0;0	n	1.00	16	0.0	16	0;0	n	1.00	21	0.0	21	0;0	n	ENSMUSG00000032479.16	Map4	chr9	protein_coding	microtubule-associated protein 4
known_NIR_19537	chr9	109869535	109892085	+	109865923	109892085	A5SS	ENSMUST00000035055.15	known	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	32	0	32	n	0.00	0	26	0	26	n	0.00	0	28	0	28	n	0.00	0	19	0	19	n	0.62	28	17	28	17	y	0.00	0	14	0	14	n	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.00	0	16	0	16	n	0.00	0	21	0	21	n	ENSMUSG00000032479.16	Map4	chr9	protein_coding	microtubule-associated protein 4
known_NIR_19538	chr9	109882590	109892085	+	109865923	109892085	A5SS	ENSMUST00000035055.15	known	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	32	0	32	n	0.00	0	26	0	26	n	0.00	0	28	0	28	n	0.00	0	19	0	19	n	0.11	2	17	2	17	y	0.00	0	14	0	14	n	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.00	0	16	0	16	n	0.00	0	21	0	21	n	ENSMUSG00000032479.16	Map4	chr9	protein_coding	microtubule-associated protein 4
known_NIR_19539	chr9	109882590	109892085	+	109869535	109892085	A5SS	ENSMUST00000163190.8	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.07	2	28	2	28	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032479.16	Map4	chr9	protein_coding	microtubule-associated protein 4
known_NIR_19540	chr9	109892191	109896553	+	109892191;109893517	109893296;109896553	ES	ENSMUST00000035055.15	known	0.05	1	20.5	1	22;19	n	0.00	0	17.5	0	22;13	n	0.00	0	47.5	0	47;48	n	0.00	0	37.5	0	44;31	n	0.00	0	41.0	0	44;38	n	0.00	0	21.5	0	24;19	n	0.03	2	66.5	2	78;55	y	0.00	0	21.0	0	24;18	n	0.00	0	27.0	0	37;17	n	0.06	2	33.5	2	33;34	y	0.00	0	31.0	0	37;25	n	0.03	1	33.5	1	41;26	n	ENSMUSG00000032479.16	Map4	chr9	protein_coding	microtubule-associated protein 4
known_NIR_19541	chr9	109898053	109900094	+	109898053	109907071	A3SS	ENSMUST00000199498.5	known	0.72	18	7	18	7	y	0.94	17	1	17	1	n	0.78	38	11	38	11	y	0.87	26	4	26	4	y	0.72	28	11	28	11	y	1.00	10	0	10	0	n	0.69	33	15	33	15	y	0.92	12	1	12	1	n	0.77	10	3	10	3	y	0.82	27	6	27	6	y	0.74	14	5	14	5	y	0.85	22	4	22	4	y	ENSMUSG00000032479.16	Map4	chr9	protein_coding	microtubule-associated protein 4
known_NIR_19542	chr9	109898053	109901681	+	109898053;109900207	109900094;109901681	ES	ENSMUST00000035055.15	known	0.11	3	25.5	3	18;33	y	0.00	0	16.5	0	17;16	n	0.07	3	42.5	3	38;47	y	0.00	0	26.5	0	26;27	n	0.00	0	29.5	0	28;31	n	0.17	3	15.0	3	10;20	y	0.51	29	27.5	29	33;22	y	0.07	1	13.0	1	12;14	n	0.00	0	15.0	0	10;20	n	0.00	0	33.5	0	27;40	n	0.06	1	17.0	1	14;20	n	0.00	0	26.5	0	22;31	n	ENSMUSG00000032479.16	Map4	chr9	protein_coding	microtubule-associated protein 4
known_NIR_19543	chr9	109898053	109901681	+	109900207	109901681	A5SS&ES	ENSMUST00000163190.8	known	0.08	3	33	3	33	y	0.00	0	16	0	16	n	0.06	3	47	3	47	y	0.00	0	27	0	27	n	0.00	0	31	0	31	n	0.13	3	20	3	20	y	0.57	29	22	29	22	y	0.07	1	14	1	14	n	0.00	0	20	0	20	n	0.00	0	40	0	40	n	0.05	1	20	1	20	n	0.00	0	31	0	31	n	ENSMUSG00000032479.16	Map4	chr9	protein_coding	microtubule-associated protein 4
known_NIR_19544	chr9	109898053	109907071	+	109898053;109901773	109901681;109907071	ES	ENSMUST00000164930.8	known	0.32	7	15.0	7	3;27	y	0.08	1	11.5	1	0;23	n	0.31	11	24.5	11	3;46	y	0.21	4	15.0	4	0;30	n	0.35	11	20.5	11	0;41	n	0.00	0	15.0	0	3;27	n	0.26	15	43.5	15	29;58	y	0.06	1	15.5	1	1;30	n	0.21	3	11.5	3	0;23	n	0.20	6	24.5	6	0;49	n	0.30	5	11.5	5	1;22	n	0.20	4	16.0	4	0;32	n	ENSMUSG00000032479.16	Map4	chr9	protein_coding	microtubule-associated protein 4
known_NIR_19545	chr9	109908964	109910489	+	109908961	109910489	A5SS	ENSMUST00000035055.15	known	0.07	3	38	3	38	y	0.03	1	39	1	39	n	0.02	1	47	1	47	n	0.10	4	38	4	38	y	0.09	4	42	4	42	y	0.00	0	21	0	21	n	0.05	5	90	5	90	y	0.00	0	27	0	27	n	0.03	1	33	1	33	n	0.02	1	47	1	47	n	0.03	1	33	1	33	n	0.00	0	39	0	39	n	ENSMUSG00000032479.16	Map4	chr9	protein_coding	microtubule-associated protein 4
known_NIR_19546	chr9	109910678	109910909	+	109910678	109910803	A3SS	ENSMUST00000035055.15	known	0.09	3	32	3	32	y	0.17	7	33	7	33	y	0.36	14	25	14	25	y	0.13	5	34	5	34	y	0.15	8	45	8	45	y	0.29	5	12	5	12	y	0.41	29	41	29	41	y	0.19	4	17	4	17	y	0.25	6	18	6	18	y	0.33	9	18	9	18	y	0.15	4	23	4	23	y	0.20	9	37	9	37	y	ENSMUSG00000032479.16	Map4	chr9	protein_coding	microtubule-associated protein 4
known_NIR_19547	chr9	109927927	109937009	-	109927927	109929884	5pMXE	ENSMUST00000062368.13	known	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.00	0	14	0	14	n	0.14	2	12	2	12	y	0.00	0	13	0	13	n	0.27	3	8	3	8	y	0.38	3	5	3	5	n	0.00	0	3	0	3	n	0.09	1	10	1	10	n	0.08	1	11	1	11	n	0.00	0	14	0	14	n	ENSMUSG00000032480.18	Dhx30	chr9	protein_coding	DEAH (Asp-Glu-Ala-His) box polypeptide 30
known_NIR_19548	chr9	109927927	109938094	-	109927927	109929884	5pMXE	ENSMUST00000062368.13	known	0.55	11	9	11	9	y	0.69	9	4	9	4	y	0.62	23	14	23	14	y	0.62	23	14	23	14	y	0.59	17	12	17	12	y	0.35	7	13	7	13	y	0.72	21	8	21	8	y	0.69	11	5	11	5	y	0.84	16	3	16	3	y	0.69	22	10	22	10	y	0.68	23	11	23	11	y	0.59	20	14	20	14	y	ENSMUSG00000032480.18	Dhx30	chr9	protein_coding	DEAH (Asp-Glu-Ala-His) box polypeptide 30
known_NIR_19549	chr9	109927927;109937037	109937009;109938094	-	109927927	109938094	cassetteExon	ENSMUST00000198425.5	known	0.00	0.0	11	0;0	11	n	0.00	0.0	9	0;0	9	n	0.00	0.0	23	0;0	23	n	0.00	0.0	23	0;0	23	n	0.11	2.0	17	2;2	17	y	0.00	0.0	7	0;0	7	n	0.21	5.5	21	3;8	21	y	0.19	2.5	11	3;2	11	y	0.03	0.5	16	0;1	16	n	0.04	1.0	22	1;1	22	n	0.02	0.5	23	1;0	23	n	0.00	0.0	20	0;0	20	n	ENSMUSG00000032480.18	Dhx30	chr9	protein_coding	DEAH (Asp-Glu-Ala-His) box polypeptide 30
known_NIR_19550	chr9	109942158	109944104	-	109942093	109944104	A3SS	ENSMUST00000198425.5	known	0.87	13	2	13	2	y	0.67	2	1	2	1	n	0.54	7	6	7	6	y	0.80	12	3	12	3	y	0.90	18	2	18	2	y	0.29	2	5	2	5	n	0.59	13	9	13	9	y	0.67	6	3	6	3	n	0.67	16	8	16	8	y	0.64	9	5	9	5	y	0.67	12	6	12	6	y	0.41	7	10	7	10	y	ENSMUSG00000032480.18	Dhx30	chr9	protein_coding	DEAH (Asp-Glu-Ala-His) box polypeptide 30
known_NIR_19551	chr9	109944279	109944559	-	109944229	109944559	A3SS	ENSMUST00000198425.5	known	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.10	1	9	1	9	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.25	2	6	2	6	n	0.12	2	14	2	14	y	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	18	0	18	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	ENSMUSG00000032480.18	Dhx30	chr9	protein_coding	DEAH (Asp-Glu-Ala-His) box polypeptide 30
known_NIR_19552	chr9	109944650	109945907	-	109944650	109946426	A5SS	ENSMUST00000198425.5	known	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.00	0	9	0	9	n	0.33	4	8	4	8	y	0.00	0	4	0	4	n	0.28	5	13	5	13	y	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	ENSMUSG00000032480.18	Dhx30	chr9	protein_coding	DEAH (Asp-Glu-Ala-His) box polypeptide 30
known_NIR_19553	chr9	109944650	109946426	-	109944650	109945746	5pMXE	ENSMUST00000200066.5	known	1.00	5	0	5	0	n	1.00	2	0	2	0	n	0.83	5	1	5	1	n	0.82	9	2	9	2	y	0.80	8	2	8	2	y	1.00	4	0	4	0	n	1.00	13	0	13	0	n	0.75	6	2	6	2	n	0.91	10	1	10	1	n	1.00	9	0	9	0	n	1.00	9	0	9	0	n	0.80	8	2	8	2	y	ENSMUSG00000032480.18	Dhx30	chr9	protein_coding	DEAH (Asp-Glu-Ala-His) box polypeptide 30
known_NIR_19554	chr9	110064121	110066203	+	110064121	110066887	A3SS	ENSMUST00000088716.12	known	0.09	3	30	3	30	y	0.00	0	18	0	18	n	0.03	1	37	1	37	n	0.00	0	22	0	22	n	0.00	0	29	0	29	n	0.05	1	18	1	18	n	0.00	0	23	0	23	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.04	1	27	1	27	n	0.00	0	15	0	15	n	0.00	0	13	0	13	n	ENSMUSG00000032481.18	Smarcc1	chr9	protein_coding	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
known_NIR_19555	chr9	110085288	110091128	+	110085369	110091128	A5SS	ENSMUST00000035058.10	known	1.00	8	0	8	0	n	0.70	7	3	7	3	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.86	6	1	6	1	n	1.00	3	0	3	0	n	0.89	17	2	17	2	y	1.00	3	0	3	0	n	1.00	8	0	8	0	n	0.92	22	2	22	2	y	1.00	5	0	5	0	n	0.86	12	2	12	2	y	ENSMUSG00000032482.10	Cspg5	chr9	protein_coding	chondroitin sulfate proteoglycan 5
known_NIR_19556	chr9	110134737	110139163	+	110134417	110139163	A5SS	ENSMUST00000199592.5	known	0.00	0	4	0	4	n	0.67	4	2	4	2	n	0.07	1	13	1	13	n	0.67	6	3	6	3	n	0.18	2	9	2	9	y	0.18	2	9	2	9	y	0.75	9	3	9	3	y	0.56	5	4	5	4	n	0.33	3	6	3	6	n	0.38	5	8	5	8	y	0.62	8	5	8	5	y	0.69	9	4	9	4	y	ENSMUSG00000054836.13	Elp6	chr9	protein_coding	elongator acetyltransferase complex subunit 6
known_NIR_19557	chr9	110134737	110139163	+	110138270	110139163	A5SS&ES	ENSMUST00000068071.12	known	0.00	0	3	0	3	n	0.57	4	3	4	3	n	0.50	1	1	1	1	n	0.67	6	3	6	3	n	0.29	2	5	2	5	n	0.22	2	7	2	7	n	0.82	9	2	9	2	y	0.71	5	2	5	2	n	0.50	3	3	3	3	n	0.83	5	1	5	1	n	1.00	8	0	8	0	n	0.82	9	2	9	2	y	ENSMUSG00000054836.13	Elp6	chr9	protein_coding	elongator acetyltransferase complex subunit 6
known_NIR_19558	chr9	110143162	110144865	+	110143162	110144819	A3SS	ENSMUST00000199592.5	known	0.05	1	20	1	20	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.07	1	13	1	13	n	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.15	3	17	3	17	y	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.29	5	12	5	12	y	0.00	0	4	0	4	n	0.00	0	18	0	18	n	ENSMUSG00000054836.13	Elp6	chr9	protein_coding	elongator acetyltransferase complex subunit 6
known_NIR_19559	chr9	110162573	110182014	+	110162417	110182014	A5SS	ENSMUST00000198976.5	known	0.98	64	1	64	1	n	1.00	32	0	32	0	n	0.98	55	1	55	1	n	0.98	81	2	81	2	y	0.99	102	1	102	1	n	1.00	43	0	43	0	n	1.00	78	0	78	0	n	1.00	46	0	46	0	n	1.00	67	0	67	0	n	1.00	92	0	92	0	n	1.00	66	0	66	0	n	1.00	101	0	101	0	n	ENSMUSG00000032485.15	Scap	chr9	protein_coding	SREBF chaperone
known_NIR_19560	chr9	110162834	110182014	+	110162573	110182014	A5SS	ENSMUST00000098350.10	known	0.03	2	64	2	64	y	0.06	2	32	2	32	y	0.05	3	55	3	55	y	0.07	6	81	6	81	y	0.09	10	102	10	102	y	0.07	3	43	3	43	y	0.15	14	78	14	78	y	0.13	7	46	7	46	y	0.07	5	67	5	67	y	0.08	8	92	8	92	y	0.07	5	66	5	66	y	0.11	13	101	13	101	y	ENSMUSG00000032485.15	Scap	chr9	protein_coding	SREBF chaperone
known_NIR_19561	chr9	110173409	110182014	+	110162573	110182014	A5SS	ENSMUST00000098350.10	known	0.00	0	64	0	64	n	0.00	0	32	0	32	n	0.00	0	55	0	55	n	0.04	3	81	3	81	y	0.00	0	102	0	102	n	0.00	0	43	0	43	n	0.00	0	78	0	78	n	0.02	1	46	1	46	n	0.00	0	67	0	67	n	0.00	0	92	0	92	n	0.00	0	66	0	66	n	0.00	0	101	0	101	n	ENSMUSG00000032485.15	Scap	chr9	protein_coding	SREBF chaperone
known_NIR_19562	chr9	110201422	110202044	+	110201422	110202100	A3SS	ENSMUST00000198976.5	known	1.00	107	0	107	0	n	1.00	73	0	73	0	n	0.96	110	5	110	5	y	0.98	139	3	139	3	y	1.00	183	0	183	0	n	1.00	81	0	81	0	n	0.98	142	3	142	3	y	1.00	85	0	85	0	n	1.00	121	0	121	0	n	1.00	147	0	147	0	n	1.00	105	0	105	0	n	1.00	162	0	162	0	n	ENSMUSG00000032485.15	Scap	chr9	protein_coding	SREBF chaperone
known_NIR_19563	chr9	110265316	110266415	-	110265301	110266415	A3SS	ENSMUST00000068025.13	known	0.00	0	5	0	5	n	0.56	5	4	5	4	n	0.33	5	10	5	10	y	0.22	2	7	2	7	n	0.36	5	9	5	9	y	0.50	1	1	1	1	n	0.38	5	8	5	8	y	0.62	5	3	5	3	n	0.00	0	3	0	3	n	0.50	4	4	4	4	n	0.33	1	2	1	2	n	0.36	4	7	4	7	y	ENSMUSG00000054792.16	Klhl18	chr9	protein_coding	kelch-like 18
known_NIR_19564	chr9	110390316	110392005	+	110390307	110392005	A5SS	ENSMUST00000153838.8	known	0.00	0	38	0	38	n	0.00	0	20	0	20	n	0.09	4	40	4	40	y	0.00	0	45	0	45	n	0.03	2	57	2	57	y	0.00	0	29	0	29	n	0.00	0	54	0	54	n	0.00	0	28	0	28	n	0.00	0	32	0	32	n	0.00	0	57	0	57	n	0.00	0	22	0	22	n	0.02	1	41	1	41	n	ENSMUSG00000044791.17	Setd2	chr9	protein_coding	SET domain containing 2
known_NIR_19565	chr9	110403342;110406406	110406190;110419456	+	110403342	110419456	cassetteExon	ENSMUST00000153838.8	known	0.22	7.5	26	7;8	26	y	0.09	2.5	25	4;1	25	n	0.16	9.5	49	11;8	49	y	0.17	7.0	33	9;5	33	y	0.04	2.0	47	1;3	47	n	0.05	1.0	19	0;2	19	n	0.13	6.0	39	6;6	39	y	0.10	3.0	26	3;3	26	y	0.04	1.5	33	0;3	33	n	0.11	6.5	55	6;7	55	y	0.17	4.5	22	5;4	22	y	0.09	5.0	51	6;4	51	y	ENSMUSG00000044791.17	Setd2	chr9	protein_coding	SET domain containing 2
known_NIR_19566	chr9	110419504	110421470	+	110419504	110421467	A3SS	ENSMUST00000153838.8	known	0.44	11	14	11	14	y	0.42	8	11	8	11	y	0.40	17	25	17	25	y	0.33	13	27	13	27	y	0.50	23	23	23	23	y	0.31	8	18	8	18	y	0.33	16	33	16	33	y	0.52	13	12	13	12	y	0.25	5	15	5	15	y	0.39	22	34	22	34	y	0.39	11	17	11	17	y	0.23	10	34	10	34	y	ENSMUSG00000044791.17	Setd2	chr9	protein_coding	SET domain containing 2
known_NIR_19567	chr9	110433299;110439117	110439066;110443938	+	110433299	110443938	cassetteExon	ENSMUST00000153838.8	known	0.00	0.0	62	0;0	62	n	0.00	0.0	55	0;0	55	n	0.01	0.5	79	0;1	79	n	0.04	2.5	60	3;2	60	y	0.00	0.0	99	0;0	99	n	0.02	0.5	31	1;0	31	n	0.00	0.0	95	0;0	95	n	0.00	0.0	43	0;0	43	n	0.02	1.0	45	1;1	45	n	0.00	0.0	76	0;0	76	n	0.01	1.0	67	1;1	67	n	0.00	0.0	73	0;0	73	n	ENSMUSG00000044791.17	Setd2	chr9	protein_coding	SET domain containing 2
known_NIR_19568	chr9	110485726;110529811	110529741;110537514	+	110485726;110521451	110521384;110537514	MXE	ENSMUST00000019803.9	known	0.00	0.0	88.0	0;0	92;84	n	0.02	1.5	97.5	2;1	100;95	n	0.02	1.5	77.5	1;2	73;82	n	0.01	0.5	81.0	1;0	86;76	n	0.01	1.5	110.0	1;2	106;114	n	0.01	0.5	64.0	1;0	63;65	n	0.01	1.5	102.0	1;2	93;111	n	0.03	2.0	55.5	0;4	58;53	n	0.02	2.0	81.0	1;3	83;79	n	0.00	0.5	120.5	0;1	112;129	n	0.03	2.5	81.0	2;3	85;77	y	0.00	0.0	93.5	0;0	98;89	n	ENSMUSG00000019659.9	Ccdc12	chr9	protein_coding	coiled-coil domain containing 12
known_NIR_19569	chr9	110521451	110537514	+	110521451	110529741	3pMXE	ENSMUST00000196092.5	known	1.00	84	0	84	0	n	0.99	95	1	95	1	n	0.96	82	3	82	3	y	0.99	76	1	76	1	n	0.99	114	1	114	1	n	0.97	65	2	65	2	y	0.99	111	1	111	1	n	1.00	53	0	53	0	n	0.95	79	4	79	4	y	0.98	129	2	129	2	y	1.00	77	0	77	0	n	0.99	89	1	89	1	n	ENSMUSG00000019659.9	Ccdc12	chr9	protein_coding	coiled-coil domain containing 12
known_NIR_19570	chr9	110521451;110529811	110529741;110537514	+	110521451	110537514	cassetteExon	ENSMUST00000019803.9	known	0.00	0.0	84	0;0	84	n	0.01	1.0	95	1;1	95	n	0.03	2.5	82	3;2	82	y	0.01	0.5	76	1;0	76	n	0.01	1.5	114	1;2	114	n	0.02	1.0	65	2;0	65	n	0.01	1.5	111	1;2	111	n	0.04	2.0	53	0;4	53	n	0.04	3.5	79	4;3	79	y	0.01	1.5	129	2;1	129	n	0.02	1.5	77	0;3	77	n	0.01	0.5	89	1;0	89	n	ENSMUSG00000019659.9	Ccdc12	chr9	protein_coding	coiled-coil domain containing 12
known_NIR_19571	chr9	110704605	110704696	-	110703094	110704696	A3SS	ENSMUST00000050958.9	known	0.33	2	4	2	4	n	0.60	3	2	3	2	n	0.00	0	4	0	4	n	0.50	2	2	2	2	n	0.37	7	12	7	12	y	-	-	-	-	-	-	0.48	11	12	11	12	y	0.12	1	7	1	7	n	0.31	4	9	4	9	y	0.44	8	10	8	10	y	0.17	2	10	2	10	y	0.13	2	13	2	13	y	ENSMUSG00000049555.11	Tmie	chr9	protein_coding	transmembrane inner ear
known_NIR_19572	chr9	110709297	110711782	+	110709297;110709525	110709410;110711782	ES	ENSMUST00000143416.2	known	0.18	1	4.5	1	3;6	n	0.12	1	7.0	1	2;12	n	0.55	3	2.5	3	0;5	n	0.52	7	6.5	7	2;11	y	0.32	5	10.5	5	3;18	y	0.50	2	2.0	2	0;4	n	0.44	4	5.0	4	2;8	y	0.44	2	2.5	2	0;5	n	0.29	3	7.5	3	3;12	y	0.50	7	7.0	7	2;12	y	0.67	3	1.5	3	0;3	n	0.47	4	4.5	4	2;7	y	ENSMUSG00000044037.16	Als2cl	chr9	protein_coding	ALS2 C-terminal like
known_NIR_19573	chr9	110709297	110711782	+	110709525	110711782	5pMXE	ENSMUST00000123389.8	known	0.14	1	6	1	6	n	0.08	1	12	1	12	n	0.38	3	5	3	5	n	0.39	7	11	7	11	y	0.22	5	18	5	18	y	0.33	2	4	2	4	n	0.33	4	8	4	8	y	0.29	2	5	2	5	n	0.20	3	12	3	12	y	0.37	7	12	7	12	y	0.50	3	3	3	3	n	0.36	4	7	4	7	y	ENSMUSG00000044037.16	Als2cl	chr9	protein_coding	ALS2 C-terminal like
known_NIR_19574	chr9	110711891	110713083	+	110711891	110713086	A3SS	ENSMUST00000084926.9	known	1.00	7	0	7	0	n	0.82	9	2	9	2	y	0.82	18	4	18	4	y	0.80	16	4	16	4	y	0.85	22	4	22	4	y	1.00	2	0	2	0	n	0.94	15	1	15	1	n	0.75	12	4	12	4	y	0.86	12	2	12	2	y	0.88	14	2	14	2	y	1.00	10	0	10	0	n	0.74	14	5	14	5	y	ENSMUSG00000044037.16	Als2cl	chr9	protein_coding	ALS2 C-terminal like
known_NIR_19575	chr9	110723228	110723634	+	110723228;110723460	110723364;110723634	ES	ENSMUST00000084926.9	known	0.11	2	17.0	2	11;23	y	0.24	6	19.0	6	12;26	y	0.17	5	24.0	5	16;32	y	0.26	8	22.5	8	19;26	y	0.29	13	31.5	13	33;30	y	0.35	4	7.5	4	6;9	y	0.21	5	18.5	5	13;24	y	0.17	3	14.5	3	8;21	y	0.20	5	20.5	5	17;24	y	0.28	11	28.0	11	24;32	y	0.17	7	33.0	7	24;42	y	0.29	10	24.5	10	21;28	y	ENSMUSG00000044037.16	Als2cl	chr9	protein_coding	ALS2 C-terminal like
known_NIR_19576	chr9	110947730	110948708	+	110947457	110948708	A5SS	ENSMUST00000035078.13	known	0.00	0	29	0	29	n	0.00	0	28	0	28	n	0.00	0	54	0	54	n	0.00	0	36	0	36	n	0.00	0	50	0	50	n	0.00	0	14	0	14	n	0.00	0	36	0	36	n	0.00	0	30	0	30	n	0.00	0	40	0	40	n	0.02	1	44	1	44	n	0.11	3	24	3	24	y	0.00	0	42	0	42	n	ENSMUSG00000032497.20	Lrrfip2	chr9	protein_coding	leucine rich repeat (in FLII) interacting protein 2
known_NIR_19577	chr9	110990457	110991916	+	110990457	110996268	A3SS	ENSMUST00000035078.13	known	0.00	0	22	0	22	n	0.00	0	11	0	11	n	0.00	0	26	0	26	n	0.00	0	30	0	30	n	0.00	0	27	0	27	n	0.00	0	7	0	7	n	0.15	4	23	4	23	y	0.00	0	25	0	25	n	0.00	0	27	0	27	n	0.00	0	29	0	29	n	0.00	0	25	0	25	n	0.00	0	38	0	38	n	ENSMUSG00000032497.20	Lrrfip2	chr9	protein_coding	leucine rich repeat (in FLII) interacting protein 2
known_NIR_19578	chr9	110990457	110991916	+	110990457	111017830	A3SS	ENSMUST00000200094.5	known	0.00	0	35	0	35	n	0.00	0	20	0	20	n	0.00	0	68	0	68	n	0.00	0	40	0	40	n	0.00	0	51	0	51	n	0.00	0	41	0	41	n	0.09	4	41	4	41	y	0.00	0	23	0	23	n	0.00	0	32	0	32	n	0.00	0	50	0	50	n	0.00	0	32	0	32	n	0.00	0	58	0	58	n	ENSMUSG00000032497.20	Lrrfip2	chr9	protein_coding	leucine rich repeat (in FLII) interacting protein 2
known_NIR_19579	chr9	110990457;110996312	110996268;111017830	+	110990457	111017830	cassetteExon	ENSMUST00000200094.5	known	0.32	16.5	35	22;11	35	y	0.34	10.5	20	11;10	20	y	0.20	17.5	68	26;9	68	y	0.39	25.5	40	30;21	40	y	0.29	21.0	51	27;15	51	y	0.12	5.5	41	7;4	41	y	0.34	21.0	41	23;19	41	y	0.45	18.5	23	25;12	23	y	0.38	19.5	32	27;12	32	y	0.30	21.5	50	29;14	50	y	0.46	27.5	32	25;30	32	y	0.34	30.0	58	38;22	58	y	ENSMUSG00000032497.20	Lrrfip2	chr9	protein_coding	leucine rich repeat (in FLII) interacting protein 2
known_NIR_19580	chr9	110996173	110996268	+	110990457	110996268	A5SS	ENSMUST00000035078.13	known	0.00	0	22	0	22	n	0.00	0	11	0	11	n	0.00	0	26	0	26	n	0.00	0	30	0	30	n	0.00	0	27	0	27	n	0.00	0	7	0	7	n	0.12	3	23	3	23	y	0.00	0	25	0	25	n	0.00	0	27	0	27	n	0.00	0	29	0	29	n	0.00	0	25	0	25	n	0.00	0	38	0	38	n	ENSMUSG00000032497.20	Lrrfip2	chr9	protein_coding	leucine rich repeat (in FLII) interacting protein 2
known_NIR_19581	chr9	111011955	111017830	+	110990457	111017830	A5SS	ENSMUST00000200094.5	known	0.03	1	35	1	35	n	0.00	0	20	0	20	n	0.01	1	68	1	68	n	0.00	0	40	0	40	n	0.02	1	51	1	51	n	0.00	0	41	0	41	n	0.07	3	41	3	41	y	0.00	0	23	0	23	n	0.06	2	32	2	32	y	0.00	0	50	0	50	n	0.03	1	32	1	32	n	0.00	0	58	0	58	n	ENSMUSG00000032497.20	Lrrfip2	chr9	protein_coding	leucine rich repeat (in FLII) interacting protein 2
known_NIR_19582	chr9	111011955	111017830	+	110996312	111017830	A5SS	ENSMUST00000035078.13	known	0.08	1	11	1	11	n	0.00	0	10	0	10	n	0.10	1	9	1	9	n	0.00	0	21	0	21	n	0.06	1	15	1	15	n	0.00	0	4	0	4	n	0.14	3	19	3	19	y	0.00	0	12	0	12	n	0.14	2	12	2	12	y	0.00	0	14	0	14	n	0.03	1	30	1	30	n	0.00	0	22	0	22	n	ENSMUSG00000032497.20	Lrrfip2	chr9	protein_coding	leucine rich repeat (in FLII) interacting protein 2
known_NIR_19583	chr9	111011955	111017830	+	111011955;111013347	111013258;111017830	ES	ENSMUST00000217341.3	known	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	0.33	3	6.0	3	3;9	y	-	-	-	-	-	-	1.00	2	0.0	2	0;0	n	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	ENSMUSG00000032497.20	Lrrfip2	chr9	protein_coding	leucine rich repeat (in FLII) interacting protein 2
known_NIR_19584	chr9	111011964	111017830	+	110990457	111017830	A5SS	ENSMUST00000200094.5	known	0.03	1	35	1	35	n	0.00	0	20	0	20	n	0.01	1	68	1	68	n	0.00	0	40	0	40	n	0.00	0	51	0	51	n	0.02	1	41	1	41	n	0.00	0	41	0	41	n	0.00	0	23	0	23	n	0.00	0	32	0	32	n	0.06	3	50	3	50	y	0.03	1	32	1	32	n	0.00	0	58	0	58	n	ENSMUSG00000032497.20	Lrrfip2	chr9	protein_coding	leucine rich repeat (in FLII) interacting protein 2
known_NIR_19585	chr9	111011964	111017830	+	110996312	111017830	A5SS	ENSMUST00000035078.13	known	0.08	1	11	1	11	n	0.00	0	10	0	10	n	0.10	1	9	1	9	n	0.00	0	21	0	21	n	0.00	0	15	0	15	n	0.20	1	4	1	4	n	0.00	0	19	0	19	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.18	3	14	3	14	y	0.03	1	30	1	30	n	0.00	0	22	0	22	n	ENSMUSG00000032497.20	Lrrfip2	chr9	protein_coding	leucine rich repeat (in FLII) interacting protein 2
known_NIR_19586	chr9	111013347	111017830	+	110990457	111017830	A5SS	ENSMUST00000200094.5	known	0.00	0	35	0	35	n	0.00	0	20	0	20	n	0.00	0	68	0	68	n	0.00	0	40	0	40	n	0.00	0	51	0	51	n	0.00	0	41	0	41	n	0.18	9	41	9	41	y	0.00	0	23	0	23	n	0.00	0	32	0	32	n	0.00	0	50	0	50	n	0.00	0	32	0	32	n	0.00	0	58	0	58	n	ENSMUSG00000032497.20	Lrrfip2	chr9	protein_coding	leucine rich repeat (in FLII) interacting protein 2
known_NIR_19587	chr9	111013347	111017830	+	110996312	111017830	A5SS	ENSMUST00000035078.13	known	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	21	0	21	n	0.00	0	15	0	15	n	0.00	0	4	0	4	n	0.32	9	19	9	19	y	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	30	0	30	n	0.00	0	22	0	22	n	ENSMUSG00000032497.20	Lrrfip2	chr9	protein_coding	leucine rich repeat (in FLII) interacting protein 2
known_NIR_19588	chr9	111019352	111028733	+	111019352	111022115	3pMXE	ENSMUST00000196703.6	known	0.05	4	84	4	84	y	0.00	0	66	0	66	n	0.03	4	123	4	123	y	0.03	3	93	3	93	y	0.01	1	127	1	127	n	0.03	2	58	2	58	y	0.00	0	101	0	101	n	0.02	1	54	1	54	n	0.06	5	74	5	74	y	0.00	0	115	0	115	n	0.01	1	83	1	83	n	0.00	0	105	0	105	n	ENSMUSG00000032497.20	Lrrfip2	chr9	protein_coding	leucine rich repeat (in FLII) interacting protein 2
known_NIR_19589	chr9	111019352	111028733	+	111019352;111022186	111022115;111028733	ES	ENSMUST00000200094.5	known	0.04	4	86.5	4	84;89	y	0.00	0	59.5	0	66;53	n	0.03	4	123.5	4	123;124	y	0.03	3	87.0	3	93;81	y	0.01	1	119.0	1	127;111	n	0.04	2	50.5	2	58;43	y	0.00	0	91.5	0	101;82	n	0.02	1	54.5	1	54;55	n	0.06	5	73.0	5	74;72	y	0.00	0	108.0	0	115;101	n	0.01	1	86.5	1	83;90	n	0.00	0	99.5	0	105;94	n	ENSMUSG00000032497.20	Lrrfip2	chr9	protein_coding	leucine rich repeat (in FLII) interacting protein 2
known_NIR_19590	chr9	111019352	111028733	+	111022186	111028733	5pMXE	ENSMUST00000197540.5	known	0.04	4	89	4	89	y	0.00	0	53	0	53	n	0.03	4	124	4	124	y	0.04	3	81	3	81	y	0.01	1	111	1	111	n	0.04	2	43	2	43	y	0.00	0	82	0	82	n	0.02	1	55	1	55	n	0.06	5	72	5	72	y	0.00	0	101	0	101	n	0.01	1	90	1	90	n	0.00	0	94	0	94	n	ENSMUSG00000032497.20	Lrrfip2	chr9	protein_coding	leucine rich repeat (in FLII) interacting protein 2
known_NIR_19591	chr9	111034915	111036865	+	111034915	111043209	A3SS	ENSMUST00000035078.13	known	0.00	0	68	0	68	n	0.00	0	58	0	58	n	0.00	0	140	0	140	n	0.00	0	80	0	80	n	0.00	0	95	0	95	n	0.00	0	57	0	57	n	0.13	13	89	13	89	y	0.00	0	35	0	35	n	0.00	0	71	0	71	n	0.00	0	100	0	100	n	0.00	0	90	0	90	n	0.00	0	93	0	93	n	ENSMUSG00000032497.20	Lrrfip2	chr9	protein_coding	leucine rich repeat (in FLII) interacting protein 2
known_NIR_19592	chr9	111042982	111043209	+	111034915	111043209	A5SS	ENSMUST00000035078.13	known	0.00	0	68	0	68	n	0.00	0	58	0	58	n	0.02	3	140	3	140	y	0.00	0	80	0	80	n	0.00	0	95	0	95	n	0.00	0	57	0	57	n	0.09	9	89	9	89	y	0.00	0	35	0	35	n	0.07	5	71	5	71	y	0.00	0	100	0	100	n	0.00	0	90	0	90	n	0.00	0	93	0	93	n	ENSMUSG00000032497.20	Lrrfip2	chr9	protein_coding	leucine rich repeat (in FLII) interacting protein 2
known_NIR_19593	chr9	111059365	111059969	-	111059403	111059969	A3SS	ENSMUST00000135218.8	known	0.00	0	46	0	46	n	0.00	0	38	0	38	n	0.00	0	34	0	34	n	0.00	0	34	0	34	n	0.00	0	45	0	45	n	0.05	2	39	2	39	y	0.02	1	54	1	54	n	0.00	0	40	0	40	n	0.00	0	37	0	37	n	0.00	0	39	0	39	n	0.03	1	32	1	32	n	0.04	2	49	2	49	y	ENSMUSG00000032498.10	Mlh1	chr9	protein_coding	mutL homolog 1
known_NIR_19594	chr9	111076471	111078288	-	111076471	111076944	A5SS	ENSMUST00000135218.8	known	1.00	19	0	19	0	n	1.00	35	0	35	0	n	0.91	21	2	21	2	y	0.90	26	3	26	3	y	0.94	29	2	29	2	y	1.00	29	0	29	0	n	0.97	33	1	33	1	n	0.93	26	2	26	2	y	0.89	25	3	25	3	y	0.97	37	1	37	1	n	1.00	24	0	24	0	n	0.92	24	2	24	2	y	ENSMUSG00000032498.10	Mlh1	chr9	protein_coding	mutL homolog 1
known_NIR_19595	chr9	111078381	111084696	-	111078381	111081932	A5SS&ES	ENSMUST00000199404.2	known	0.00	0	16	0	16	n	0.00	0	22	0	22	n	0.03	1	34	1	34	n	0.09	3	29	3	29	y	0.00	0	29	0	29	n	0.03	1	36	1	36	n	0.03	1	34	1	34	n	0.03	1	30	1	30	n	0.00	0	21	0	21	n	0.18	5	23	5	23	y	0.00	0	31	0	31	n	0.11	3	24	3	24	y	ENSMUSG00000032498.10	Mlh1	chr9	protein_coding	mutL homolog 1
known_NIR_19596	chr9	111078381;111082044	111081932;111084696	-	111078381	111084696	cassetteExon	ENSMUST00000135218.8	known	1.00	18.0	0	16;20	0	n	1.00	18.5	0	22;15	0	n	0.96	27.0	1	34;20	1	n	0.90	26.5	3	29;24	3	y	1.00	26.0	0	29;23	0	n	0.97	28.0	1	36;20	1	n	0.97	31.5	1	34;29	1	n	0.97	31.0	1	30;32	1	n	1.00	19.0	0	21;17	0	n	0.83	24.0	5	23;25	5	y	1.00	31.0	0	31;31	0	n	0.88	22.5	3	24;21	3	y	ENSMUSG00000032498.10	Mlh1	chr9	protein_coding	mutL homolog 1
known_NIR_19597	chr9	111078381;111082044	111081932;111086468	-	111078381;111085203	111084696;111086468	MXE	ENSMUST00000135218.8	known	0.36	8.0	14.5	16;0	0;29	n	0.46	11.0	13.0	22;0	0;26	n	0.60	17.0	11.5	34;0	1;22	n	0.49	15.5	16.0	29;2	3;29	y	0.51	14.5	14.0	29;0	0;28	n	0.65	18.0	9.5	36;0	1;18	n	0.61	17.0	11.0	34;0	1;21	n	0.73	15.0	5.5	30;0	1;10	n	0.62	10.5	6.5	21;0	0;13	n	0.43	11.5	15.5	23;0	5;26	n	0.66	15.5	8.0	31;0	0;16	n	0.46	12.0	14.0	24;0	3;25	n	ENSMUSG00000032498.10	Mlh1	chr9	protein_coding	mutL homolog 1
known_NIR_19598	chr9	111082044	111084696	-	111082044	111086468	A5SS	ENSMUST00000199404.2	known	1.00	20	0	20	0	n	1.00	15	0	15	0	n	1.00	20	0	20	0	n	0.92	24	2	24	2	y	1.00	23	0	23	0	n	1.00	20	0	20	0	n	1.00	29	0	29	0	n	1.00	32	0	32	0	n	1.00	17	0	17	0	n	1.00	25	0	25	0	n	1.00	31	0	31	0	n	1.00	21	0	21	0	n	ENSMUSG00000032498.10	Mlh1	chr9	protein_coding	mutL homolog 1
known_NIR_19599	chr9	111085203	111086468	-	111082044	111086468	A3SS	ENSMUST00000199404.2	known	1.00	29	0	29	0	n	1.00	26	0	26	0	n	1.00	22	0	22	0	n	0.94	29	2	29	2	y	1.00	28	0	28	0	n	1.00	18	0	18	0	n	1.00	21	0	21	0	n	1.00	10	0	10	0	n	1.00	13	0	13	0	n	1.00	26	0	26	0	n	1.00	16	0	16	0	n	1.00	25	0	25	0	n	ENSMUSG00000032498.10	Mlh1	chr9	protein_coding	mutL homolog 1
known_NIR_19600	chr9	111097376	111100477	-	111097371	111100477	A3SS	ENSMUST00000135218.8	known	0.78	7	2	7	2	n	0.92	12	1	12	1	n	0.76	29	9	29	9	y	0.95	36	2	36	2	y	0.82	36	8	36	8	y	0.88	23	3	23	3	y	0.89	16	2	16	2	y	0.88	21	3	21	3	y	0.94	15	1	15	1	n	1.00	21	0	21	0	n	1.00	12	0	12	0	n	0.87	26	4	26	4	y	ENSMUSG00000032498.10	Mlh1	chr9	protein_coding	mutL homolog 1
known_NIR_19601	chr9	113514506	113516693	-	113514491	113516693	A3SS	ENSMUST00000035086.13	known	0.00	0	71	0	71	n	0.00	0	49	0	49	n	0.01	2	201	2	201	y	0.01	1	103	1	103	n	0.00	0	149	0	149	n	0.00	0	109	0	109	n	0.00	0	93	0	93	n	0.00	0	95	0	95	n	0.00	0	65	0	65	n	0.04	5	125	5	125	y	0.00	0	78	0	78	n	0.00	0	126	0	126	n	ENSMUSG00000032504.16	Pdcd6ip	chr9	protein_coding	programmed cell death 6 interacting protein
known_NIR_19602	chr9	113691355	113691504	+	113691355	113697616	A3SS	ENSMUST00000111838.10	known	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.18	2	9	2	9	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000033392.17	Clasp2	chr9	protein_coding	CLIP associating protein 2
known_NIR_19603	chr9	113788007	113793620	+	113788007;113788551	113788444;113793620	ES	ENSMUST00000084885.12	known	0.78	83	23.0	83	28;18	y	0.73	46	17.0	46	23;11	y	0.75	100	33.0	100	35;31	y	0.76	90	28.5	90	37;20	y	0.74	120	41.5	120	51;32	y	0.65	31	16.5	31	21;12	y	0.75	97	32.0	97	43;21	y	0.77	59	17.5	59	23;12	y	0.72	80	30.5	80	43;18	y	0.75	122	41.5	122	47;36	y	0.75	69	23.5	69	24;23	y	0.80	118	29.5	118	39;20	y	ENSMUSG00000009741.16	Ubp1	chr9	protein_coding	upstream binding protein 1
known_NIR_19604	chr9	113801961	113802633	+	113801961	113802587	A3SS	ENSMUST00000084885.12	known	0.09	6	62	6	62	y	0.00	0	70	0	70	n	0.04	3	77	3	77	y	0.03	3	84	3	84	y	0.05	4	70	4	70	y	0.03	1	37	1	37	n	0.04	3	70	3	70	y	0.04	2	47	2	47	y	0.08	6	68	6	68	y	0.00	0	107	0	107	n	0.05	4	79	4	79	y	0.00	0	91	0	91	n	ENSMUSG00000009741.16	Ubp1	chr9	protein_coding	upstream binding protein 1
known_NIR_19605	chr9	113802709	113804414	+	113802638	113804414	A5SS	ENSMUST00000084885.12	known	0.10	9	78	9	78	y	0.04	3	71	3	71	y	0.03	3	90	3	90	y	0.04	4	96	4	96	y	0.10	9	77	9	77	y	0.10	4	35	4	35	y	0.05	7	121	7	121	y	0.09	5	51	5	51	y	0.13	9	59	9	59	y	0.03	4	124	4	124	y	0.07	6	86	6	86	y	0.07	7	88	7	88	y	ENSMUSG00000009741.16	Ubp1	chr9	protein_coding	upstream binding protein 1
known_NIR_19606	chr9	114230337	114233589	+	114230337	114246029	A3SS	ENSMUST00000063042.11	known	0.00	0	25	0	25	n	0.00	0	9	0	9	n	0.20	1	4	1	4	n	0.04	1	22	1	22	n	0.08	1	12	1	12	n	0.14	1	6	1	6	n	0.26	6	17	6	17	y	0.07	1	14	1	14	n	0.07	1	13	1	13	n	0.00	0	26	0	26	n	0.17	2	10	2	10	y	0.05	1	21	1	21	n	ENSMUSG00000045594.11	Glb1	chr9	protein_coding	galactosidase, beta 1
known_NIR_19607	chr9	114230337	114249421	+	114230337;114246198	114246029;114249421	ES	ENSMUST00000063042.11	known	0.00	0	25.0	0	25;25	n	0.00	0	11.5	0	9;14	n	0.00	0	9.5	0	4;15	n	0.04	1	25.0	1	22;28	n	0.05	1	18.0	1	12;24	n	0.00	0	10.0	0	6;14	n	0.00	0	20.5	0	17;24	n	0.00	0	13.5	0	14;13	n	0.08	1	12.0	1	13;11	n	0.00	0	26.5	0	26;27	n	0.11	2	16.5	2	10;23	y	0.00	0	24.0	0	21;27	n	ENSMUSG00000045594.11	Glb1	chr9	protein_coding	galactosidase, beta 1
known_NIR_19608	chr9	114587954	114592287	-	114587954;114591073	114590975;114592287	ES	ENSMUST00000035009.16	known	0.20	2	8.0	2	8;8	y	0.06	1	16.5	1	18;15	n	0.21	2	7.5	2	6;9	y	0.00	0	5.5	0	7;4	n	0.09	2	20.5	2	17;24	y	0.00	0	9.5	0	10;9	n	0.04	1	22.0	1	26;18	n	0.00	0	7.5	0	11;4	n	0.00	0	3.5	0	6;1	n	0.00	0	10.5	0	12;9	n	0.00	0	13.5	0	10;17	n	0.00	0	13.5	0	11;16	n	ENSMUSG00000032436.18	Cmtm7	chr9	protein_coding	CKLF-like MARVEL transmembrane domain containing 7
known_NIR_19609	chr9	115960781	116004012	-	115960781;115987413	115987339;116004012	ES	ENSMUST00000061101.12	known	0.75	6	2.0	6	2;2	y	0.00	0	2.0	0	1;3	n	0.69	9	4.0	9	4;4	y	0.67	11	5.5	11	6;5	y	0.32	5	10.5	5	11;10	y	0.54	7	6.0	7	6;6	y	0.63	11	6.5	11	8;5	y	0.36	6	10.5	6	12;9	y	0.33	2	4.0	2	2;6	y	0.52	6	5.5	6	5;6	y	0.67	10	5.0	10	7;3	y	0.62	5	3.0	5	3;3	y	ENSMUSG00000032440.14	Tgfbr2	chr9	protein_coding	transforming growth factor, beta receptor II
known_NIR_19610	chr9	117869944	117876481	+	117870026	117876481	A5SS	ENSMUST00000044454.12	known	0.01	1	78	1	78	n	0.02	1	44	1	44	n	0.00	0	88	0	88	n	0.00	0	85	0	85	n	0.00	0	112	0	112	n	0.00	0	58	0	58	n	0.00	0	78	0	78	n	0.00	0	51	0	51	n	0.02	1	61	1	61	n	0.02	2	104	2	104	y	0.00	0	56	0	56	n	0.00	0	85	0	85	n	ENSMUSG00000039285.13	Azi2	chr9	protein_coding	5-azacytidine induced gene 2
known_NIR_19611	chr9	117878503	117880422	+	117878503	117878965	3pMXE	ENSMUST00000143024.2	known	0.19	19	83	19	83	y	0.23	21	71	21	71	y	0.10	15	134	15	134	y	0.18	23	106	23	106	y	0.12	16	115	16	115	y	0.13	7	47	7	47	y	0.11	13	103	13	103	y	0.04	3	67	3	67	y	0.20	15	61	15	61	y	0.13	17	112	17	112	y	0.13	11	72	11	72	y	0.15	15	85	15	85	y	ENSMUSG00000039285.13	Azi2	chr9	protein_coding	5-azacytidine induced gene 2
known_NIR_19612	chr9	117878503	117880422	+	117878503;117879064	117878965;117880422	ES	ENSMUST00000044454.12	known	0.18	19	85.0	19	83;87	y	0.22	21	73.5	21	71;76	y	0.11	15	125.5	15	134;117	y	0.17	23	112.5	23	106;119	y	0.12	16	119.0	16	115;123	y	0.12	7	52.5	7	47;58	y	0.10	13	115.5	13	103;128	y	0.04	3	68.0	3	67;69	y	0.19	15	65.5	15	61;70	y	0.14	17	107.5	17	112;103	y	0.13	11	76.5	11	72;81	y	0.14	15	96.0	15	85;107	y	ENSMUSG00000039285.13	Azi2	chr9	protein_coding	5-azacytidine induced gene 2
known_NIR_19613	chr9	117880162	117880422	+	117878503	117880422	A5SS	ENSMUST00000154583.8	known	0.05	1	19	1	19	n	0.09	2	21	2	21	y	0.06	1	15	1	15	n	0.08	2	23	2	23	y	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.13	2	13	2	13	y	0.25	1	3	1	3	n	0.12	2	15	2	15	y	0.00	0	17	0	17	n	0.08	1	11	1	11	n	0.00	0	15	0	15	n	ENSMUSG00000039285.13	Azi2	chr9	protein_coding	5-azacytidine induced gene 2
known_NIR_19614	chr9	117880162	117880422	+	117879064	117880422	A5SS	ENSMUST00000044454.12	known	0.01	1	87	1	87	n	0.03	2	76	2	76	y	0.01	1	117	1	117	n	0.02	2	119	2	119	y	0.00	0	123	0	123	n	0.00	0	58	0	58	n	0.02	2	128	2	128	y	0.01	1	69	1	69	n	0.03	2	70	2	70	y	0.00	0	103	0	103	n	0.01	1	81	1	81	n	0.00	0	107	0	107	n	ENSMUSG00000039285.13	Azi2	chr9	protein_coding	5-azacytidine induced gene 2
known_NIR_19615	chr9	117888243	117888688	+	117888243	117898099	A3SS	ENSMUST00000154583.8	known	0.62	8	5	8	5	y	0.79	15	4	15	4	y	0.89	39	5	39	5	y	0.84	16	3	16	3	y	0.79	19	5	19	5	y	0.82	14	3	14	3	y	0.89	24	3	24	3	y	0.90	9	1	9	1	n	0.67	8	4	8	4	y	0.85	28	5	28	5	y	0.84	16	3	16	3	y	0.82	18	4	18	4	y	ENSMUSG00000039285.13	Azi2	chr9	protein_coding	5-azacytidine induced gene 2
known_NIR_19616	chr9	117888243	117890518	+	117888243	117898099	A3SS	ENSMUST00000154583.8	known	0.38	3	5	3	5	n	0.60	6	4	6	4	y	0.50	5	5	5	5	y	0.67	6	3	6	3	n	0.58	7	5	7	5	y	0.25	1	3	1	3	n	0.67	6	3	6	3	n	0.88	7	1	7	1	n	0.60	6	4	6	4	y	0.55	6	5	6	5	y	0.40	2	3	2	3	n	0.43	3	4	3	4	n	ENSMUSG00000039285.13	Azi2	chr9	protein_coding	5-azacytidine induced gene 2
known_NIR_19617	chr9	117888243	117898099	+	117888243	117890782	3pMXE	ENSMUST00000044454.12	known	0.07	5	71	5	71	y	0.05	4	76	4	76	y	0.04	5	107	5	107	y	0.03	3	84	3	84	y	0.04	5	109	5	109	y	0.06	3	46	3	46	y	0.03	3	89	3	89	y	0.01	1	66	1	66	n	0.06	4	68	4	68	y	0.05	5	92	5	92	y	0.07	3	43	3	43	y	0.04	4	87	4	87	y	ENSMUSG00000039285.13	Azi2	chr9	protein_coding	5-azacytidine induced gene 2
known_NIR_19618	chr9	117888243;117888734	117888688;117890782	+	117888243	117890782	cassetteExon	ENSMUST00000044454.12	known	0.10	8.0	71	8;8	71	y	0.15	13.0	76	15;11	76	y	0.25	36.0	107	39;33	107	y	0.14	14.0	84	16;12	84	y	0.12	15.5	109	19;12	109	y	0.20	11.5	46	14;9	46	y	0.19	21.0	89	24;18	89	y	0.12	9.0	66	9;9	66	y	0.08	6.0	68	8;4	68	y	0.20	23.5	92	28;19	92	y	0.25	14.0	43	16;12	43	y	0.16	17.0	87	18;16	87	y	ENSMUSG00000039285.13	Azi2	chr9	protein_coding	5-azacytidine induced gene 2
known_NIR_19619	chr9	117888243;117890585	117890518;117890782	+	117888243	117890782	cassetteExon	ENSMUST00000044454.12	known	0.04	3.0	71	3;3	71	y	0.06	4.5	76	6;3	76	y	0.07	8.0	107	5;11	107	y	0.07	6.5	84	6;7	84	y	0.07	8.0	109	7;9	109	y	0.04	2.0	46	1;3	46	n	0.05	4.5	89	6;3	89	y	0.08	6.0	66	7;5	66	y	0.07	5.0	68	6;4	68	y	0.05	5.0	92	6;4	92	y	0.05	2.5	43	2;3	43	y	0.05	5.0	87	3;7	87	y	ENSMUSG00000039285.13	Azi2	chr9	protein_coding	5-azacytidine induced gene 2
known_NIR_19620	chr9	117888243;117890585	117890518;117890782	+	117888243;117888734	117888688;117890782	MXE	ENSMUST00000130735.8	known	0.27	3.0	8.0	3;3	8;8	y	0.26	4.5	13.0	6;3	15;11	y	0.18	8.0	36.0	5;11	39;33	y	0.32	6.5	14.0	6;7	16;12	y	0.34	8.0	15.5	7;9	19;12	y	0.15	2.0	11.5	1;3	14;9	n	0.18	4.5	21.0	6;3	24;18	y	0.40	6.0	9.0	7;5	9;9	y	0.45	5.0	6.0	6;4	8;4	y	0.18	5.0	23.5	6;4	28;19	y	0.15	2.5	14.0	2;3	16;12	y	0.23	5.0	17.0	3;7	18;16	y	ENSMUSG00000039285.13	Azi2	chr9	protein_coding	5-azacytidine induced gene 2
known_NIR_19621	chr9	117944497	117979136	-	117944497	117979085	A5SS	ENSMUST00000044220.11	known	0.00	0	76	0	76	n	0.00	0	86	0	86	n	0.00	0	77	0	77	n	0.00	0	116	0	116	n	0.01	1	112	1	112	n	0.00	0	35	0	35	n	0.02	2	119	2	119	y	0.00	0	56	0	56	n	0.00	0	83	0	83	n	0.00	0	109	0	109	n	0.00	0	96	0	96	n	0.00	0	93	0	93	n	ENSMUSG00000039163.11	Cmc1	chr9	protein_coding	COX assembly mitochondrial protein 1
known_NIR_19622	chr9	118343337;118348252	118348154;118351586	+	118343337	118351586	cassetteExon	ENSMUST00000084820.6	known	0.03	0.5	15	1;0	15	n	0.17	1.0	5	0;2	5	n	0.07	3.0	38	3;3	38	y	0.08	1.5	17	1;2	17	n	0.11	5.0	40	5;5	40	y	0.13	3.5	23	2;5	23	y	0.52	29.5	27	29;30	27	y	0.10	3.5	33	3;4	33	y	0.03	0.5	15	0;1	15	n	0.10	3.0	26	2;4	26	y	0.06	1.5	22	2;1	22	n	0.20	4.0	16	5;3	16	y	ENSMUSG00000038708.11	Golga4	chr9	protein_coding	golgi autoantigen, golgin subfamily a, 4
known_NIR_19623	chr9	118366011	118367945	+	118366011;118366393	118366310;118367945	ES	ENSMUST00000084820.6	known	0.31	7	15.5	7	19;12	y	0.29	6	14.5	6	14;15	y	0.33	25	51.5	25	50;53	y	0.15	5	28.0	5	30;26	y	0.26	11	31.5	11	27;36	y	0.19	5	22.0	5	20;24	y	0.22	14	48.5	14	46;51	y	0.39	15	23.5	15	21;26	y	0.21	4	15.0	4	14;16	y	0.17	6	30.0	6	31;29	y	0.21	4	15.5	4	18;13	y	0.34	13	25.0	13	25;25	y	ENSMUSG00000038708.11	Golga4	chr9	protein_coding	golgi autoantigen, golgin subfamily a, 4
known_NIR_19624	chr9	118394735	118395976	+	118394735	118396027	A3SS	ENSMUST00000084820.6	known	0.02	2	83	2	83	y	0.00	0	102	0	102	n	0.04	6	133	6	133	y	0.01	1	82	1	82	n	0.00	0	131	0	131	n	0.03	2	69	2	69	y	0.01	2	153	2	153	y	0.05	3	54	3	54	y	0.02	1	59	1	59	n	0.00	0	81	0	81	n	0.03	2	60	2	60	y	0.04	3	74	3	74	y	ENSMUSG00000038708.11	Golga4	chr9	protein_coding	golgi autoantigen, golgin subfamily a, 4
known_NIR_19625	chr9	118402089;118405424	118405291;118406210	+	118402089	118406210	cassetteExon	ENSMUST00000084820.6	known	0.06	6.5	106	7;6	106	y	0.08	9.0	106	10;8	106	y	0.07	11.5	161	9;14	161	y	0.10	9.0	81	10;8	81	y	0.06	8.5	126	7;10	126	y	0.03	3.0	87	3;3	87	y	0.04	6.0	151	4;8	151	y	0.07	7.0	98	7;7	98	y	0.07	6.0	81	3;9	81	y	0.06	6.5	105	4;9	105	y	0.04	4.0	94	1;7	94	n	0.04	4.0	92	4;4	92	y	ENSMUSG00000038708.11	Golga4	chr9	protein_coding	golgi autoantigen, golgin subfamily a, 4
known_NIR_19626	chr9	118406296	118410917	+	118406296	118408610	3pMXE	ENSMUST00000211826.2	known	0.95	107	6	107	6	y	0.95	134	7	134	7	y	0.90	150	17	150	17	y	0.98	121	3	121	3	y	0.96	154	7	154	7	y	0.94	75	5	75	5	y	0.97	181	5	181	5	y	0.91	94	9	94	9	y	0.96	78	3	78	3	y	0.98	108	2	108	2	y	0.98	120	2	120	2	y	0.97	90	3	90	3	y	ENSMUSG00000038708.11	Golga4	chr9	protein_coding	golgi autoantigen, golgin subfamily a, 4
known_NIR_19627	chr9	118406296;118408674	118408610;118410917	+	118406296	118410917	cassetteExon	ENSMUST00000084820.6	known	0.04	4.0	107	6;2	107	y	0.04	6.0	134	7;5	134	y	0.08	13.5	150	17;10	150	y	0.04	4.5	121	3;6	121	y	0.04	6.0	154	7;5	154	y	0.06	5.0	75	5;5	75	y	0.03	5.5	181	5;6	181	y	0.06	5.5	94	9;2	94	y	0.04	3.0	78	3;3	78	y	0.03	3.5	108	2;5	108	y	0.01	1.0	120	2;0	120	n	0.04	4.0	90	3;5	90	y	ENSMUSG00000038708.11	Golga4	chr9	protein_coding	golgi autoantigen, golgin subfamily a, 4
known_NIR_19628	chr9	118840457	118856005	+	118840457;118849112	118849080;118856005	ES	ENSMUST00000073109.12	known	0.00	0	1.5	0	1;2	n	0.00	0	1.0	0	0;2	n	0.00	0	7.5	0	8;7	n	0.00	0	2.0	0	3;1	n	0.25	2	6.0	2	5;7	y	-	-	-	-	-	-	0.14	1	6.0	1	5;7	n	0.00	0	2.0	0	2;2	n	0.00	0	0.5	0	0;1	n	0.00	0	3.5	0	2;5	n	-	-	-	-	-	-	0.00	0	6.0	0	6;6	n	ENSMUSG00000047409.14	Ctdspl	chr9	protein_coding	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like
known_NIR_19629	chr9	118882029	118886851	+	118881896	118886851	A5SS	ENSMUST00000135872.8	known	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	17	0	17	n	-	-	-	-	-	-	0.33	4	8	4	8	y	0.00	0	11	0	11	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000038775.15	Vill	chr9	protein_coding	villin-like
known_NIR_19630	chr9	118892770	118894527	+	118892669	118894527	A5SS	ENSMUST00000126251.8	known	0.40	2	3	2	3	n	0.00	0	1	0	1	n	0.94	15	1	15	1	n	-	-	-	-	-	-	0.75	6	2	6	2	n	1.00	16	0	16	0	n	0.75	6	2	6	2	n	0.76	13	4	13	4	y	1.00	3	0	3	0	n	1.00	4	0	4	0	n	0.86	6	1	6	1	n	0.50	3	3	3	3	n	ENSMUSG00000038775.15	Vill	chr9	protein_coding	villin-like
known_NIR_19631	chr9	118899417	118899691	+	118899417	118899625	A3SS	ENSMUST00000051386.13	known	0.00	0	12	0	12	n	0.25	2	6	2	6	n	0.05	2	36	2	36	y	0.00	0	6	0	6	n	0.00	0	30	0	30	n	0.12	3	21	3	21	y	0.07	1	13	1	13	n	0.06	1	17	1	17	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	ENSMUSG00000038775.15	Vill	chr9	protein_coding	villin-like
known_NIR_19632	chr9	119113753;119119931	119119803;119123481	-	119113753	119123481	cassetteExon	ENSMUST00000040853.11	known	0.00	0.0	24	0;0	24	n	0.07	0.5	7	1;0	7	n	0.08	2.0	23	2;2	23	y	0.04	1.5	32	0;3	32	n	0.03	1.0	29	1;1	29	n	0.00	0.0	16	0;0	16	n	0.00	0.0	31	0;0	31	n	0.00	0.0	17	0;0	17	n	0.00	0.0	16	0;0	16	n	0.03	1.0	31	2;0	31	n	0.00	0.0	27	0;0	27	n	0.05	1.0	18	0;2	18	n	ENSMUSG00000036737.13	Oxsr1	chr9	protein_coding	oxidative-stress responsive 1
known_NIR_19633	chr9	119173574	119176796	+	119173574;119175634	119175536;119176796	ES	ENSMUST00000177463.8	known	0.00	0	635.0	0	531;739	n	0.00	0	782.0	0	657;907	n	0.00	0	565.5	0	473;658	n	0.00	0	875.5	0	723;1028	n	0.00	0	1028.5	0	833;1224	n	0.00	0	525.5	0	396;655	n	0.00	0	1139.0	0	917;1361	n	0.00	1	576.0	1	468;684	n	0.00	2	614.5	2	508;721	y	0.00	0	1265.5	0	1072;1459	n	0.00	0	831.0	0	666;996	n	0.00	0	754.0	0	611;897	n	ENSMUSG00000036138.17	Acaa1a	chr9	protein_coding	acetyl-Coenzyme A acyltransferase 1A
known_NIR_19634	chr9	119173574	119176796	+	119175634	119176796	A5SS	ENSMUST00000176796.8	known	0.00	0	739	0	739	n	0.00	0	907	0	907	n	0.00	0	658	0	658	n	0.00	0	1028	0	1028	n	0.00	0	1224	0	1224	n	0.00	0	655	0	655	n	0.00	0	1361	0	1361	n	0.00	1	684	1	684	n	0.00	2	721	2	721	y	0.00	0	1459	0	1459	n	0.00	0	996	0	996	n	0.00	0	897	0	897	n	ENSMUSG00000036138.17	Acaa1a	chr9	protein_coding	acetyl-Coenzyme A acyltransferase 1A
known_NIR_19635	chr9	119176876	119177652	+	119176876	119177647	A3SS	ENSMUST00000039784.12	known	0.00	0	788	0	788	n	0.00	2	958	2	958	y	0.00	0	632	0	632	n	0.00	0	974	0	974	n	0.00	2	1237	2	1237	y	0.00	0	659	0	659	n	0.00	4	1381	4	1381	y	0.01	8	656	8	656	y	0.00	1	763	1	763	n	0.00	2	1452	2	1452	y	0.00	2	1001	2	1001	y	0.00	0	880	0	880	n	ENSMUSG00000036138.17	Acaa1a	chr9	protein_coding	acetyl-Coenzyme A acyltransferase 1A
known_NIR_19636	chr9	119178166	119178558	+	119178166;119178475	119178420;119178558	ES	ENSMUST00000039784.12	known	0.00	0	590.5	0	443;738	n	0.00	0	770.5	0	588;953	n	0.00	0	405.5	0	291;520	n	0.00	0	734.5	0	587;882	n	0.00	3	826.0	3	624;1028	y	0.00	0	425.0	0	329;521	n	0.00	0	1004.5	0	734;1275	n	0.00	0	446.0	0	333;559	n	0.00	0	531.0	0	397;665	n	0.00	0	1020.5	0	818;1223	n	0.00	0	776.0	0	598;954	n	0.01	5	603.5	5	474;733	y	ENSMUSG00000036138.17	Acaa1a	chr9	protein_coding	acetyl-Coenzyme A acyltransferase 1A
known_NIR_19637	chr9	119188380	119193563	+	119188380;119190249	119190180;119193563	ES	ENSMUST00000039610.10	known	0.02	3	129.5	3	167;92	y	0.02	2	93.0	2	117;69	y	0.09	11	110.0	11	150;70	y	0.04	7	172.5	7	225;120	y	0.06	11	171.0	11	208;134	y	0.11	7	54.5	7	62;47	y	0.05	8	167.0	8	203;131	y	0.07	6	80.0	6	95;65	y	0.09	12	115.5	12	147;84	y	0.09	20	202.0	20	252;152	y	0.04	6	131.5	6	160;103	y	0.06	11	167.5	11	201;134	y	ENSMUSG00000035769.10	Xylb	chr9	protein_coding	xylulokinase homolog (H. influenzae)
known_NIR_19638	chr9	119190249	119190403	+	119190249	119193563	A3SS	ENSMUST00000039610.10	known	0.23	28	92	28	92	y	0.27	25	69	25	69	y	0.39	44	70	44	70	y	0.21	32	120	32	120	y	0.23	41	134	41	134	y	0.27	17	47	17	47	y	0.26	45	131	45	131	y	0.27	24	65	24	65	y	0.24	26	84	26	84	y	0.20	38	152	38	152	y	0.14	17	103	17	103	y	0.20	33	134	33	134	y	ENSMUSG00000035769.10	Xylb	chr9	protein_coding	xylulokinase homolog (H. influenzae)
known_NIR_19639	chr9	119198751	119199345	+	119198751	119200982	A3SS	ENSMUST00000039610.10	known	0.10	16	149	16	149	y	0.14	18	109	18	109	y	0.10	15	138	15	138	y	0.12	22	155	22	155	y	0.08	20	222	20	222	y	0.15	10	58	10	58	y	0.07	13	166	13	166	y	0.14	15	90	15	90	y	0.10	13	120	13	120	y	0.14	33	202	33	202	y	0.06	9	140	9	140	y	0.06	14	220	14	220	y	ENSMUSG00000035769.10	Xylb	chr9	protein_coding	xylulokinase homolog (H. influenzae)
known_NIR_19640	chr9	119257142	119257291	+	119257142	119257267	A3SS	ENSMUST00000165044.3	known	0.36	4	7	4	7	y	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.43	3	4	3	4	n	0.50	7	7	7	7	y	1.00	1	0	1	0	n	0.67	2	1	2	1	n	0.56	5	4	5	4	n	0.00	0	3	0	3	n	0.58	7	5	7	5	y	0.18	2	9	2	9	y	0.22	2	7	2	7	n	ENSMUSG00000061393.15	Acvr2b	chr9	protein_coding	activin receptor IIB
known_NIR_19641	chr9	119724382	119731352	+	119724023	119731352	A5SS	ENSMUST00000036561.8	known	0.06	2	29	2	29	y	0.00	0	15	0	15	n	0.00	0	33	0	33	n	0.00	0	27	0	27	n	0.00	0	39	0	39	n	0.00	0	10	0	10	n	0.00	0	40	0	40	n	0.17	2	10	2	10	y	0.00	0	16	0	16	n	0.12	3	21	3	21	y	0.08	2	22	2	22	y	0.04	1	25	1	25	n	ENSMUSG00000032512.8	Wdr48	chr9	protein_coding	WD repeat domain 48
known_NIR_19642	chr9	119745857	119746177	+	119745899	119746177	A5SS	ENSMUST00000036561.8	known	0.00	0	52	0	52	n	0.00	0	30	0	30	n	0.00	0	43	0	43	n	0.00	0	33	0	33	n	0.02	1	58	1	58	n	0.00	0	19	0	19	n	0.00	0	50	0	50	n	0.00	0	24	0	24	n	0.03	1	29	1	29	n	0.00	0	48	0	48	n	0.03	1	33	1	33	n	0.04	2	49	2	49	y	ENSMUSG00000032512.8	Wdr48	chr9	protein_coding	WD repeat domain 48
known_NIR_19643	chr9	119806311	119812685	-	119806311	119813472	A5SS	ENSMUST00000035101.9	known	1.00	11	0	11	0	n	1.00	8	0	8	0	n	0.94	30	2	30	2	y	1.00	17	0	17	0	n	0.94	16	1	16	1	n	0.67	4	2	4	2	n	1.00	21	0	21	0	n	1.00	4	0	4	0	n	1.00	17	0	17	0	n	1.00	18	0	18	0	n	1.00	6	0	6	0	n	1.00	23	0	23	0	n	ENSMUSG00000032515.9	Csrnp1	chr9	protein_coding	cysteine-serine-rich nuclear protein 1
known_NIR_19644	chr9	119806311	119812685	-	119806311	119813700	A5SS	ENSMUST00000213936.2	known	0.92	11	1	11	1	n	1.00	8	0	8	0	n	0.86	30	5	30	5	y	0.94	17	1	17	1	n	1.00	16	0	16	0	n	1.00	4	0	4	0	n	1.00	21	0	21	0	n	1.00	4	0	4	0	n	0.89	17	2	17	2	y	1.00	18	0	18	0	n	1.00	6	0	6	0	n	1.00	23	0	23	0	n	ENSMUSG00000032515.9	Csrnp1	chr9	protein_coding	cysteine-serine-rich nuclear protein 1
known_NIR_19645	chr9	119946603	119949323	+	119946603	119948949	A3SS	ENSMUST00000137522.8	known	0.86	50	8	50	8	y	0.85	39	7	39	7	y	0.43	12	16	12	16	y	0.86	48	8	48	8	y	0.64	50	28	50	28	y	0.41	9	13	9	13	y	0.67	35	17	35	17	y	0.70	26	11	26	11	y	0.60	31	21	31	21	y	0.73	47	17	47	17	y	0.84	41	8	41	8	y	0.78	50	14	50	14	y	ENSMUSG00000032519.12	Slc25a38	chr9	protein_coding	solute carrier family 25, member 38
known_NIR_19646	chr9	119946603;119949021	119948949;119949323	+	119946603	119949323	cassetteExon	ENSMUST00000035106.12	known	0.11	6.0	50	8;4	50	y	0.12	5.5	39	7;4	39	y	0.51	12.5	12	16;9	12	y	0.11	6.0	48	8;4	48	y	0.31	22.5	50	28;17	50	y	0.50	9.0	9	13;5	9	y	0.26	12.0	35	17;7	35	y	0.27	9.5	26	11;8	26	y	0.25	10.5	31	21;0	31	n	0.21	12.5	47	17;8	47	y	0.12	5.5	41	8;3	41	y	0.19	11.5	50	14;9	50	y	ENSMUSG00000032519.12	Slc25a38	chr9	protein_coding	solute carrier family 25, member 38
known_NIR_19647	chr9	119946603;119949071	119948949;119949323	+	119946603	119949323	cassetteExon	ENSMUST00000035106.12	known	0.10	5.5	50	8;3	50	y	0.08	3.5	39	7;0	39	n	0.44	9.5	12	16;3	12	y	0.09	4.5	48	8;1	48	n	0.26	17.5	50	28;7	50	y	0.45	7.5	9	13;2	9	y	0.24	11.0	35	17;5	35	y	0.21	7.0	26	11;3	26	y	0.29	12.5	31	21;4	31	y	0.16	9.0	47	17;1	47	n	0.12	5.5	41	8;3	41	y	0.15	8.5	50	14;3	50	y	ENSMUSG00000032519.12	Slc25a38	chr9	protein_coding	solute carrier family 25, member 38
known_NIR_19648	chr9	119949021	119949323	+	119949071	119949323	A5SS	ENSMUST00000150093.8	known	0.57	4	3	4	3	n	1.00	4	0	4	0	n	0.75	9	3	9	3	y	0.80	4	1	4	1	n	0.71	17	7	17	7	y	0.71	5	2	5	2	n	0.58	7	5	7	5	y	0.73	8	3	8	3	y	0.00	0	4	0	4	n	0.89	8	1	8	1	n	0.50	3	3	3	3	n	0.75	9	3	9	3	y	ENSMUSG00000032519.12	Slc25a38	chr9	protein_coding	solute carrier family 25, member 38
known_NIR_19649	chr9	119958342	119959111	+	119958342	119959184	A3SS	ENSMUST00000035105.7	known	0.00	0	2888	0	2888	n	0.00	4	2978	4	2978	y	0.00	6	3969	6	3969	y	0.00	2	2462	2	2462	y	0.00	5	3879	5	3879	y	0.00	1	2337	1	2337	n	0.00	3	3870	3	3870	y	0.00	0	2187	0	2187	n	0.00	1	2428	1	2428	n	0.00	6	3538	6	3538	y	0.00	7	3472	7	3472	y	0.00	9	3226	9	3226	y	ENSMUSG00000032518.7	Rpsa	chr9	protein_coding	ribosomal protein SA
known_NIR_19650	chr9	119959429	119959875	+	119959429	119959834	A3SS	ENSMUST00000035105.7	known	0.02	50	2479	50	2479	y	0.00	0	3019	0	3019	n	0.02	68	3841	68	3841	y	0.02	32	2100	32	2100	y	0.02	64	3674	64	3674	y	0.00	0	2219	0	2219	n	0.00	0	3718	0	3718	n	0.01	30	2077	30	2077	y	0.00	0	2305	0	2305	n	0.02	68	3178	68	3178	y	0.00	0	3160	0	3160	n	0.02	50	3033	50	3033	y	ENSMUSG00000032518.7	Rpsa	chr9	protein_coding	ribosomal protein SA
known_NIR_19651	chr9	120400983	120401162	+	120400607	120401162	A5SS	ENSMUST00000165532.3	known	0.00	0	424	0	424	n	0.00	2	448	2	448	y	0.00	0	560	0	560	n	0.01	3	421	3	421	y	0.01	5	571	5	571	y	0.00	0	341	0	341	n	0.00	1	623	1	623	n	0.00	0	291	0	291	n	0.00	1	371	1	371	n	0.00	2	604	2	604	y	0.00	2	456	2	456	y	0.00	0	562	0	562	n	ENSMUSG00000025794.10	Rpl14	chr9	protein_coding	ribosomal protein L14
known_NIR_19652	chr9	120401263	120402642	+	120401263;120401928	120401834;120402642	ES	ENSMUST00000165532.3	known	0.00	0	1628.0	0	1417;1839	n	0.00	1	1679.0	1	1392;1966	n	0.00	0	2195.0	0	1978;2412	n	0.00	0	1458.5	0	1273;1644	n	0.00	2	2050.5	2	1805;2296	y	0.00	0	1148.0	0	1051;1245	n	0.00	1	2225.5	1	1981;2470	n	0.00	0	1106.5	0	980;1233	n	0.00	3	1403.5	3	1262;1545	y	0.00	3	2095.0	3	1774;2416	y	0.00	0	1831.0	0	1581;2081	n	0.00	0	2039.0	0	1805;2273	n	ENSMUSG00000025794.10	Rpl14	chr9	protein_coding	ribosomal protein L14
known_NIR_19653	chr9	120762682	120779239	+	120762704	120779239	A5SS	ENSMUST00000007130.15	known	0.00	0	112	0	112	n	0.00	0	46	0	46	n	0.00	0	183	0	183	n	0.00	0	148	0	148	n	0.00	0	220	0	220	n	0.00	0	118	0	118	n	0.07	9	125	9	125	y	0.00	0	89	0	89	n	0.03	3	84	3	84	y	0.00	0	167	0	167	n	0.00	0	78	0	78	n	0.00	0	140	0	140	n	ENSMUSG00000006932.18	Ctnnb1	chr9	protein_coding	catenin (cadherin associated protein), beta 1
known_NIR_19654	chr9	120763027	120779239	+	120762704	120779239	A5SS	ENSMUST00000007130.15	known	0.00	0	112	0	112	n	0.00	0	46	0	46	n	0.00	0	183	0	183	n	0.01	1	148	1	148	n	0.00	0	220	0	220	n	0.00	0	118	0	118	n	0.00	0	125	0	125	n	0.00	0	89	0	89	n	0.02	2	84	2	84	y	0.00	0	167	0	167	n	0.00	0	78	0	78	n	0.02	3	140	3	140	y	ENSMUSG00000006932.18	Ctnnb1	chr9	protein_coding	catenin (cadherin associated protein), beta 1
known_NIR_19655	chr9	120785035	120786173	+	120785038	120786173	A5SS	ENSMUST00000007130.15	known	0.00	0	272	0	272	n	0.01	3	217	3	217	y	0.00	0	378	0	378	n	0.00	0	344	0	344	n	0.02	7	453	7	453	y	0.03	8	247	8	247	y	0.02	8	350	8	350	y	0.01	3	221	3	221	y	0.02	4	253	4	253	y	0.01	5	353	5	353	y	0.01	3	259	3	259	y	0.00	0	359	0	359	n	ENSMUSG00000006932.18	Ctnnb1	chr9	protein_coding	catenin (cadherin associated protein), beta 1
known_NIR_19656	chr9	121211998	121220923	+	121193365	121220923	A5SS	ENSMUST00000211301.2	known	0.46	18	21	18	21	y	0.50	9	9	9	9	y	0.45	20	24	20	24	y	0.42	15	21	15	21	y	0.49	28	29	28	29	y	0.45	13	16	13	16	y	0.48	20	22	20	22	y	0.62	21	13	21	13	y	0.17	5	24	5	24	y	0.37	17	29	17	29	y	0.33	8	16	8	16	y	0.19	6	25	6	25	y	ENSMUSG00000032536.13	Trak1	chr9	protein_coding	trafficking protein, kinesin binding 1
known_NIR_19657	chr9	121221117	121229302	+	121221117	121260545	A3SS	ENSMUST00000211301.2	known	0.00	0	51	0	51	n	0.00	0	44	0	44	n	0.00	0	69	0	69	n	0.00	0	75	0	75	n	0.00	0	73	0	73	n	0.00	0	46	0	46	n	0.04	3	77	3	77	y	0.00	0	55	0	55	n	0.00	0	46	0	46	n	0.00	0	68	0	68	n	0.00	0	39	0	39	n	0.03	2	63	2	63	y	ENSMUSG00000032536.13	Trak1	chr9	protein_coding	trafficking protein, kinesin binding 1
known_NIR_19658	chr9	121289643	121298051	+	121289643;121296043	121295973;121298051	ES	ENSMUST00000211301.2	known	0.16	2	10.5	2	9;12	y	0.00	0	9.5	0	6;13	n	0.28	7	18.0	7	20;16	y	0.26	6	17.0	6	16;18	y	0.31	11	24.5	11	16;33	y	0.32	5	10.5	5	8;13	y	0.25	7	21.0	7	14;28	y	0.15	3	17.5	3	12;23	y	0.40	7	10.5	7	6;15	y	0.24	10	32.0	10	23;41	y	0.32	7	15.0	7	11;19	y	0.00	0	10.5	0	5;16	n	ENSMUSG00000032536.13	Trak1	chr9	protein_coding	trafficking protein, kinesin binding 1
known_NIR_19659	chr9	121513901	121514589	-	121513924	121514589	A3SS	ENSMUST00000078547.12	known	0.12	2	15	2	15	y	0.00	0	9	0	9	n	0.23	3	10	3	10	y	0.28	5	13	5	13	y	0.39	7	11	7	11	y	0.00	0	7	0	7	n	0.13	2	13	2	13	y	0.17	2	10	2	10	y	0.25	3	9	3	9	y	0.09	2	21	2	21	y	0.00	0	9	0	9	n	0.18	2	9	2	9	y	ENSMUSG00000061536.14	Sec22c	chr9	protein_coding	SEC22 homolog C, vesicle trafficking protein
known_NIR_19660	chr9	121519481	121524600	-	121519481	121521976	5pMXE	ENSMUST00000215056.2	known	0.00	0	23	0	23	n	0.00	0	12	0	12	n	0.08	1	12	1	12	n	0.06	1	15	1	15	n	0.00	0	23	0	23	n	0.06	1	15	1	15	n	0.00	0	18	0	18	n	0.00	0	15	0	15	n	0.20	2	8	2	8	y	0.03	1	32	1	32	n	0.09	2	20	2	20	y	0.00	0	28	0	28	n	ENSMUSG00000061536.14	Sec22c	chr9	protein_coding	SEC22 homolog C, vesicle trafficking protein
known_NIR_19661	chr9	121519481	121524600	-	121519481;121522139	121521976;121524600	ES	ENSMUST00000078547.12	known	0.00	0	14.5	0	23;6	n	0.00	0	10.5	0	12;9	n	0.07	1	12.5	1	12;13	n	0.06	1	17.0	1	15;19	n	0.00	0	20.0	0	23;17	n	0.09	1	10.0	1	15;5	n	0.00	0	18.0	0	18;18	n	0.00	0	14.5	0	15;14	n	0.22	2	7.0	2	8;6	y	0.04	1	21.5	1	32;11	n	0.11	2	17.0	2	20;14	y	0.00	0	21.0	0	28;14	n	ENSMUSG00000061536.14	Sec22c	chr9	protein_coding	SEC22 homolog C, vesicle trafficking protein
known_NIR_19662	chr9	121524808	121534280	-	121524808	121533990	5pMXE	ENSMUST00000111560.10	known	0.00	0	8	0	8	n	0.12	1	7	1	7	n	0.29	2	5	2	5	n	0.12	1	7	1	7	n	0.40	6	9	6	9	y	0.33	3	6	3	6	n	0.40	4	6	4	6	y	0.40	2	3	2	3	n	0.44	4	5	4	5	n	0.56	5	4	5	4	n	0.75	3	1	3	1	n	0.50	3	3	3	3	n	ENSMUSG00000061536.14	Sec22c	chr9	protein_coding	SEC22 homolog C, vesicle trafficking protein
known_NIR_19663	chr9	121539513	121539705	+	121539537	121539705	A5SS	ENSMUST00000035113.11	known	0.02	4	260	4	260	y	0.02	4	241	4	241	y	0.02	5	266	5	266	y	0.00	1	235	1	235	n	0.02	9	376	9	376	y	0.01	3	200	3	200	y	0.02	7	281	7	281	y	0.00	1	214	1	214	n	0.00	0	212	0	212	n	0.01	3	284	3	284	y	0.00	1	276	1	276	n	0.01	4	279	4	279	y	ENSMUSG00000032526.12	Ss18l2	chr9	protein_coding	SS18, nBAF chromatin remodeling complex subunit like 2
known_NIR_19664	chr9	121539781	121541669	+	121539781	121541631	A3SS	ENSMUST00000035113.11	known	0.01	2	323	2	323	y	0.01	2	349	2	349	y	0.01	5	343	5	343	y	0.01	4	319	4	319	y	0.00	1	422	1	422	n	0.02	5	237	5	237	y	0.01	3	397	3	397	y	0.00	0	223	0	223	n	0.01	2	281	2	281	y	0.00	0	372	0	372	n	0.01	3	382	3	382	y	0.01	2	338	2	338	y	ENSMUSG00000032526.12	Ss18l2	chr9	protein_coding	SS18, nBAF chromatin remodeling complex subunit like 2
known_NIR_19665	chr9	121548611	121556382	+	121549078	121556382	5pMXE	ENSMUST00000182337.2	known	1.00	20	0	20	0	n	1.00	7	0	7	0	n	1.00	32	0	32	0	n	0.94	15	1	15	1	n	1.00	37	0	37	0	n	0.91	21	2	21	2	y	0.93	14	1	14	1	n	1.00	27	0	27	0	n	1.00	7	0	7	0	n	1.00	22	0	22	0	n	1.00	12	0	12	0	n	1.00	19	0	19	0	n	ENSMUSG00000032525.16	Nktr	chr9	protein_coding	natural killer tumor recognition sequence
known_NIR_19666	chr9	121556456	121558702	+	121556456;121557751	121557644;121558702	ES	ENSMUST00000183070.8	known	0.00	0	15.5	0	16;15	n	0.09	1	10.5	1	12;9	n	0.18	8	37.0	8	33;41	y	0.00	0	15.5	0	14;17	n	0.10	4	36.0	4	38;34	y	0.14	3	18.0	3	18;18	y	0.18	3	14.0	3	14;14	y	0.00	0	26.0	0	28;24	n	0.05	1	17.5	1	17;18	n	0.07	2	28.5	2	30;27	y	0.00	0	11.5	0	15;8	n	0.20	6	24.0	6	21;27	y	ENSMUSG00000032525.16	Nktr	chr9	protein_coding	natural killer tumor recognition sequence
known_NIR_19667	chr9	121558746	121560544	+	121558746	121559063	A3SS	ENSMUST00000182904.9	known	0.56	9	7	9	7	y	0.45	5	6	5	6	y	0.18	11	49	11	49	y	0.25	4	12	4	12	y	0.44	15	19	15	19	y	0.30	6	14	6	14	y	0.12	2	14	2	14	y	0.48	16	17	16	17	y	0.25	5	15	5	15	y	0.35	11	20	11	20	y	0.80	8	2	8	2	y	0.40	10	15	10	15	y	ENSMUSG00000032525.16	Nktr	chr9	protein_coding	natural killer tumor recognition sequence
known_NIR_19668	chr9	121558746	121560544	+	121558746;121559090	121559063;121560544	ES	ENSMUST00000183070.8	known	0.51	9	8.5	9	7;10	y	0.45	5	6.0	5	6;6	y	0.20	11	45.0	11	49;41	y	0.26	4	11.5	4	12;11	y	0.41	15	22.0	15	19;25	y	0.34	6	11.5	6	14;9	y	0.12	2	14.0	2	14;14	y	0.52	16	14.5	16	17;12	y	0.26	5	14.5	5	15;14	y	0.36	11	19.5	11	20;19	y	0.76	8	2.5	8	2;3	y	0.41	10	14.5	10	15;14	y	ENSMUSG00000032525.16	Nktr	chr9	protein_coding	natural killer tumor recognition sequence
known_NIR_19669	chr9	121560631;121567481	121567454;121570188	+	121560631	121570188	cassetteExon	ENSMUST00000035112.13	known	0.04	0.5	12	0;1	12	n	0.08	1.0	12	1;1	12	n	0.14	6.0	38	8;4	38	y	0.15	2.5	14	3;2	14	y	0.19	5.5	24	5;6	24	y	0.08	1.0	12	0;2	12	n	0.22	4.5	16	6;3	16	y	0.11	2.0	17	2;2	17	y	0.06	1.0	17	1;1	17	n	0.11	3.0	24	3;3	24	y	0.25	2.0	6	2;2	6	y	0.16	4.5	24	2;7	24	y	ENSMUSG00000032525.16	Nktr	chr9	protein_coding	natural killer tumor recognition sequence
known_NIR_19670	chr9	121570809	121571706	+	121570809	121571631	A3SS	ENSMUST00000183070.8	known	0.26	8	23	8	23	y	0.57	13	10	13	10	y	0.48	20	22	20	22	y	0.12	3	22	3	22	y	0.33	14	29	14	29	y	0.32	10	21	10	21	y	0.26	8	23	8	23	y	0.26	9	26	9	26	y	0.16	3	16	3	16	y	0.60	18	12	18	12	y	0.23	6	20	6	20	y	0.28	12	31	12	31	y	ENSMUSG00000032525.16	Nktr	chr9	protein_coding	natural killer tumor recognition sequence
known_NIR_19671	chr9	121681675	121685516	-	121681671	121685516	A3SS	ENSMUST00000213124.2	known	0.67	6	3	6	3	n	1.00	5	0	5	0	n	1.00	9	0	9	0	n	1.00	4	0	4	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	5	0	5	0	n	1.00	4	0	4	0	n	0.60	3	2	3	2	n	0.69	11	5	11	5	y	1.00	4	0	4	0	n	1.00	4	0	4	0	n	ENSMUSG00000038412.9	Higd1a	chr9	protein_coding	HIG1 domain family, member 1A
known_NIR_19672	chr9	121681675	121685516	-	121681675	121685504	A5SS	ENSMUST00000215300.2	known	0.50	6	6	6	6	y	0.56	5	4	5	4	n	0.60	9	6	9	6	y	0.50	4	4	4	4	n	0.17	1	5	1	5	n	1.00	1	0	1	0	n	1.00	5	0	5	0	n	0.67	4	2	4	2	n	0.50	3	3	3	3	n	0.65	11	6	11	6	y	0.67	4	2	4	2	n	0.67	4	2	4	2	n	ENSMUSG00000038412.9	Higd1a	chr9	protein_coding	HIG1 domain family, member 1A
known_NIR_19673	chr9	121681675	121685787	-	121681675	121685504	5pMXE	ENSMUST00000214988.2	known	0.40	4	6	4	6	y	0.33	2	4	2	4	n	0.62	10	6	10	6	y	0.56	5	4	5	4	n	0.64	9	5	9	5	y	1.00	2	0	2	0	n	1.00	4	0	4	0	n	0.50	2	2	2	2	n	0.50	3	3	3	3	n	0.54	7	6	7	6	y	0.71	5	2	5	2	n	0.50	2	2	2	2	n	ENSMUSG00000038412.9	Higd1a	chr9	protein_coding	HIG1 domain family, member 1A
known_NIR_19674	chr9	121681675	121685787	-	121681675;121685651	121685516;121685787	ES	ENSMUST00000213147.2	known	0.57	4	3.0	4	6;0	n	0.44	2	2.5	2	5;0	n	0.65	10	5.5	10	9;2	y	0.67	5	2.5	5	4;1	n	0.90	9	1.0	9	1;1	n	0.80	2	0.5	2	1;0	n	0.62	4	2.5	4	5;0	n	0.50	2	2.0	2	4;0	n	0.67	3	1.5	3	3;0	n	0.56	7	5.5	7	11;0	n	0.71	5	2.0	5	4;0	n	0.50	2	2.0	2	4;0	n	ENSMUSG00000038412.9	Higd1a	chr9	protein_coding	HIG1 domain family, member 1A
known_NIR_19675	chr9	121681675	121685787	-	121685651	121685787	A3SS&ES	ENSMUST00000213124.2	known	1.00	4	0	4	0	n	1.00	2	0	2	0	n	0.83	10	2	10	2	y	0.83	5	1	5	1	n	0.90	9	1	9	1	n	1.00	2	0	2	0	n	1.00	4	0	4	0	n	1.00	2	0	2	0	n	1.00	3	0	3	0	n	1.00	7	0	7	0	n	1.00	5	0	5	0	n	1.00	2	0	2	0	n	ENSMUSG00000038412.9	Higd1a	chr9	protein_coding	HIG1 domain family, member 1A
known_NIR_19676	chr9	121681675	121686578	-	121681675	121685504	5pMXE	ENSMUST00000214988.2	known	0.99	402	6	402	6	y	0.99	281	4	281	4	y	0.98	391	6	391	6	y	0.99	381	4	381	4	y	0.99	397	5	397	5	y	1.00	166	0	166	0	n	1.00	416	0	416	0	n	0.99	146	2	146	2	y	0.99	332	3	332	3	y	0.99	460	6	460	6	y	1.00	407	2	407	2	y	0.99	374	2	374	2	y	ENSMUSG00000038412.9	Higd1a	chr9	protein_coding	HIG1 domain family, member 1A
known_NIR_19677	chr9	121681675	121686578	-	121685938	121686578	A3SS&ES	ENSMUST00000213124.2	known	0.98	402	8	402	8	y	0.99	281	2	281	2	y	0.98	391	10	391	10	y	0.98	381	7	381	7	y	0.99	397	6	397	6	y	0.99	166	2	166	2	y	0.97	416	12	416	12	y	0.99	146	1	146	1	n	1.00	332	0	332	0	n	0.99	460	3	460	3	y	0.99	407	4	407	4	y	1.00	374	1	374	1	n	ENSMUSG00000038412.9	Higd1a	chr9	protein_coding	HIG1 domain family, member 1A
known_NIR_19678	chr9	121681675;121685651	121685504;121685787	-	121681675	121685787	cassetteExon	ENSMUST00000216914.2	known	0.43	3.0	4	6;0	4	n	0.50	2.0	2	4;0	2	n	0.29	4.0	10	6;2	10	y	0.33	2.5	5	4;1	5	n	0.25	3.0	9	5;1	9	n	0.00	0.0	2	0;0	2	n	0.00	0.0	4	0;0	4	n	0.33	1.0	2	2;0	2	n	0.33	1.5	3	3;0	3	n	0.30	3.0	7	6;0	7	n	0.17	1.0	5	2;0	5	n	0.33	1.0	2	2;0	2	n	ENSMUSG00000038412.9	Higd1a	chr9	protein_coding	HIG1 domain family, member 1A
known_NIR_19679	chr9	121681675;121685651	121685504;121686578	-	121681675	121686578	cassetteExon	ENSMUST00000215007.2	known	0.02	7.5	402	6;9	402	y	0.02	4.5	281	4;5	281	y	0.01	4.5	391	6;3	391	y	0.02	8.0	381	4;12	381	y	0.01	3.0	397	5;1	397	n	0.01	1.0	166	0;2	166	n	0.01	4.5	416	0;9	416	n	0.02	2.5	146	2;3	146	y	0.01	3.5	332	3;4	332	y	0.02	7.5	460	6;9	460	y	0.01	3.0	407	2;4	407	y	0.01	4.0	374	2;6	374	y	ENSMUSG00000038412.9	Higd1a	chr9	protein_coding	HIG1 domain family, member 1A
known_NIR_19680	chr9	121681675;121685651	121685516;121686578	-	121681675	121686578	cassetteExon	ENSMUST00000215007.2	known	0.02	7.5	402	6;9	402	y	0.02	5.0	281	5;5	281	y	0.02	6.0	391	9;3	391	y	0.02	8.0	381	4;12	381	y	0.00	1.0	397	1;1	397	n	0.01	1.5	166	1;2	166	n	0.02	7.0	416	5;9	416	y	0.02	3.5	146	4;3	146	y	0.01	3.5	332	3;4	332	y	0.02	10.0	460	11;9	460	y	0.01	4.0	407	4;4	407	y	0.01	5.0	374	4;6	374	y	ENSMUSG00000038412.9	Higd1a	chr9	protein_coding	HIG1 domain family, member 1A
known_NIR_19681	chr9	121681675;121685651	121685516;121686578	-	121681675;121685938	121685787;121686578	MXE	ENSMUST00000216914.2	known	0.56	7.5	6.0	6;9	4;8	y	0.71	5.0	2.0	5;5	2;2	y	0.38	6.0	10.0	9;3	10;10	y	0.57	8.0	6.0	4;12	5;7	y	0.12	1.0	7.5	1;1	9;6	n	0.43	1.5	2.0	1;2	2;2	n	0.47	7.0	8.0	5;9	4;12	y	0.70	3.5	1.5	4;3	2;1	n	0.70	3.5	1.5	3;4	3;0	n	0.67	10.0	5.0	11;9	7;3	y	0.47	4.0	4.5	4;4	5;4	y	0.77	5.0	1.5	4;6	2;1	n	ENSMUSG00000038412.9	Higd1a	chr9	protein_coding	HIG1 domain family, member 1A
known_NIR_19682	chr9	121681675;121685938	121685504;121686578	-	121681675	121686578	cassetteExon	ENSMUST00000215007.2	known	0.02	7.0	402	6;8	402	y	0.01	3.0	281	4;2	281	y	0.02	8.0	391	6;10	391	y	0.01	5.5	381	4;7	381	y	0.01	5.5	397	5;6	397	y	0.01	1.0	166	0;2	166	n	0.01	6.0	416	0;12	416	n	0.01	1.5	146	2;1	146	n	0.00	1.5	332	3;0	332	n	0.01	4.5	460	6;3	460	y	0.01	3.0	407	2;4	407	y	0.00	1.5	374	2;1	374	n	ENSMUSG00000038412.9	Higd1a	chr9	protein_coding	HIG1 domain family, member 1A
known_NIR_19683	chr9	121681675;121685938	121685516;121686578	-	121681675	121686578	cassetteExon	ENSMUST00000215007.2	known	0.02	7.0	402	6;8	402	y	0.01	3.5	281	5;2	281	y	0.02	9.5	391	9;10	391	y	0.01	5.5	381	4;7	381	y	0.01	3.5	397	1;6	397	n	0.01	1.5	166	1;2	166	n	0.02	8.5	416	5;12	416	y	0.02	2.5	146	4;1	146	n	0.00	1.5	332	3;0	332	n	0.01	7.0	460	11;3	460	y	0.01	4.0	407	4;4	407	y	0.01	2.5	374	4;1	374	n	ENSMUSG00000038412.9	Higd1a	chr9	protein_coding	HIG1 domain family, member 1A
known_NIR_19684	chr9	121681675;121685938	121685787;121686578	-	121681675	121686578	cassetteExon	ENSMUST00000215007.2	known	0.01	6.0	402	4;8	402	y	0.01	2.0	281	2;2	281	y	0.02	10.0	391	10;10	391	y	0.02	6.0	381	5;7	381	y	0.02	7.5	397	9;6	397	y	0.01	2.0	166	2;2	166	y	0.02	8.0	416	4;12	416	y	0.01	1.5	146	2;1	146	n	0.00	1.5	332	3;0	332	n	0.01	5.0	460	7;3	460	y	0.01	4.5	407	5;4	407	y	0.00	1.5	374	2;1	374	n	ENSMUSG00000038412.9	Higd1a	chr9	protein_coding	HIG1 domain family, member 1A
known_NIR_19685	chr9	121681675;121685938	121685787;121686578	-	121681675;121685651	121685504;121686578	MXE	ENSMUST00000215300.2	known	0.44	6.0	7.5	4;8	6;9	y	0.31	2.0	4.5	2;2	4;5	y	0.69	10.0	4.5	10;10	6;3	y	0.43	6.0	8.0	5;7	4;12	y	0.71	7.5	3.0	9;6	5;1	n	0.67	2.0	1.0	2;2	0;2	n	0.64	8.0	4.5	4;12	0;9	n	0.38	1.5	2.5	2;1	2;3	n	0.30	1.5	3.5	3;0	3;4	n	0.40	5.0	7.5	7;3	6;9	y	0.60	4.5	3.0	5;4	2;4	y	0.27	1.5	4.0	2;1	2;6	n	ENSMUSG00000038412.9	Higd1a	chr9	protein_coding	HIG1 domain family, member 1A
known_NIR_19686	chr9	121685651;121685938	121685787;121686578	-	121685651	121686578	cassetteExon	ENSMUST00000215300.2	known	0.31	4.0	9	0;8	9	n	0.17	1.0	5	0;2	5	n	0.67	6.0	3	2;10	3	y	0.25	4.0	12	1;7	12	n	0.78	3.5	1	1;6	1	n	0.33	1.0	2	0;2	2	n	0.40	6.0	9	0;12	9	n	0.14	0.5	3	0;1	3	n	0.00	0.0	4	0;0	4	n	0.14	1.5	9	0;3	9	n	0.33	2.0	4	0;4	4	n	0.08	0.5	6	0;1	6	n	ENSMUSG00000038412.9	Higd1a	chr9	protein_coding	HIG1 domain family, member 1A
known_NIR_19687	chr9	121812889	121824942	-	121812889;121813222	121813166;121824942	ES	ENSMUST00000217610.2	known	0.40	2	3.0	2	4;2	n	0.43	3	4.0	3	4;4	y	1.00	2	0.0	2	0;0	n	0.80	2	0.5	2	0;1	n	0.50	1	1.0	1	2;0	n	0.67	3	1.5	3	2;1	n	0.67	2	1.0	2	1;1	n	0.75	3	1.0	3	2;0	n	0.40	1	1.5	1	2;1	n	0.35	3	5.5	3	6;5	y	0.53	4	3.5	4	6;1	n	0.29	1	2.5	1	3;2	n	ENSMUSG00000066235.8	Pomgnt2	chr9	protein_coding	protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2
known_NIR_19688	chr9	121946473	121965972	+	121946473;121961008	121960959;121965972	ES	ENSMUST00000118886.9	known	0.09	1	10.5	1	14;7	n	0.12	1	7.0	1	12;2	n	0.00	0	16.5	0	30;3	n	0.29	6	14.5	6	25;4	y	0.00	0	14.5	0	20;9	n	0.00	0	6.5	0	11;2	n	0.04	1	21.5	1	30;13	n	0.08	1	11.5	1	13;10	n	0.30	3	7.0	3	10;4	y	0.19	4	17.5	4	22;13	y	0.08	1	12.0	1	17;7	n	0.10	3	26.5	3	41;12	y	ENSMUSG00000038145.18	Snrk	chr9	protein_coding	SNF related kinase
known_NIR_19689	chr9	121946568	121965972	+	121961816	121965972	A5SS&ES	ENSMUST00000119215.9	known	0.13	2	13	2	13	y	0.11	1	8	1	8	n	0.00	0	23	0	23	n	0.03	1	30	1	30	n	0.00	0	25	0	25	n	0.09	1	10	1	10	n	0.04	1	22	1	22	n	0.00	0	7	0	7	n	0.00	0	18	0	18	n	0.00	0	39	0	39	n	0.00	0	30	0	30	n	0.00	0	19	0	19	n	ENSMUSG00000038145.18	Snrk	chr9	protein_coding	SNF related kinase
known_NIR_19690	chr9	121947119	121960959	+	121946473	121960959	A5SS	ENSMUST00000119215.9	known	0.07	1	14	1	14	n	0.00	0	12	0	12	n	0.00	0	30	0	30	n	0.00	0	25	0	25	n	0.23	6	20	6	20	y	0.00	0	11	0	11	n	0.03	1	30	1	30	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.00	0	22	0	22	n	0.06	1	17	1	17	n	0.00	0	41	0	41	n	ENSMUSG00000038145.18	Snrk	chr9	protein_coding	SNF related kinase
known_NIR_19691	chr9	121961008	121965972	+	121961008;121961816	121961694;121965972	ES	ENSMUST00000119215.9	known	0.29	7	17.5	7	22;13	y	0.16	2	10.5	2	13;8	y	0.10	3	27.0	3	31;23	y	0.12	4	30.5	4	31;30	y	0.25	9	27.0	9	29;25	y	0.15	2	11.5	2	13;10	y	0.35	13	24.0	13	26;22	y	0.43	10	13.5	10	20;7	y	0.22	4	14.5	4	11;18	y	0.28	13	33.0	13	27;39	y	0.21	7	27.0	7	24;30	y	0.32	12	26.0	12	33;19	y	ENSMUSG00000038145.18	Snrk	chr9	protein_coding	SNF related kinase
known_NIR_19692	chr9	121961816	121963053	+	121961816	121963027	A3SS	ENSMUST00000215432.2	known	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.43	3	4	3	4	n	0.14	1	6	1	6	n	0.10	1	9	1	9	n	0.17	1	5	1	5	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.12	2	15	2	15	y	-	-	-	-	-	-	0.33	1	2	1	2	n	ENSMUSG00000038145.18	Snrk	chr9	protein_coding	SNF related kinase
known_NIR_19693	chr9	121961816	121965972	+	121946473	121965972	A5SS	ENSMUST00000120173.9	known	0.93	13	1	13	1	n	0.89	8	1	8	1	n	1.00	23	0	23	0	n	0.83	30	6	30	6	y	1.00	25	0	25	0	n	1.00	10	0	10	0	n	0.96	22	1	22	1	n	0.88	7	1	7	1	n	0.86	18	3	18	3	y	0.91	39	4	39	4	y	0.97	30	1	30	1	n	0.86	19	3	19	3	y	ENSMUSG00000038145.18	Snrk	chr9	protein_coding	SNF related kinase
known_NIR_19694	chr9	121961816	121965972	+	121961816	121963027	3pMXE	ENSMUST00000215432.2	known	0.68	13	6	13	6	y	0.89	8	1	8	1	n	0.85	23	4	23	4	y	0.83	30	6	30	6	y	0.74	25	9	25	9	y	0.67	10	5	10	5	y	0.73	22	8	22	8	y	0.47	7	8	7	8	y	0.86	18	3	18	3	y	0.72	39	15	39	15	y	1.00	30	0	30	0	n	0.90	19	2	19	2	y	ENSMUSG00000038145.18	Snrk	chr9	protein_coding	SNF related kinase
known_NIR_19695	chr9	121961816	121965972	+	121963142	121965972	A5SS&ES	ENSMUST00000146832.8	known	0.76	13	4	13	4	y	0.73	8	3	8	3	y	0.85	23	4	23	4	y	0.83	30	6	30	6	y	0.71	25	10	25	10	y	0.67	10	5	10	5	y	0.67	22	11	22	11	y	0.64	7	4	7	4	y	0.82	18	4	18	4	y	0.76	39	12	39	12	y	1.00	30	0	30	0	n	0.83	19	4	19	4	y	ENSMUSG00000038145.18	Snrk	chr9	protein_coding	SNF related kinase
known_NIR_19696	chr9	121961816;121963142	121963027;121965972	+	121961816	121965972	cassetteExon	ENSMUST00000119215.9	known	0.28	5.0	13	6;4	13	y	0.20	2.0	8	1;3	8	n	0.15	4.0	23	4;4	23	y	0.17	6.0	30	6;6	30	y	0.28	9.5	25	9;10	25	y	0.33	5.0	10	5;5	10	y	0.30	9.5	22	8;11	22	y	0.46	6.0	7	8;4	7	y	0.16	3.5	18	3;4	18	y	0.26	13.5	39	15;12	39	y	0.00	0.0	30	0;0	30	n	0.14	3.0	19	2;4	19	y	ENSMUSG00000038145.18	Snrk	chr9	protein_coding	SNF related kinase
known_NIR_19697	chr9	121961816;121963142	121963053;121965972	+	121961816	121965972	cassetteExon	ENSMUST00000119215.9	known	0.13	2.0	13	0;4	13	n	0.16	1.5	8	0;3	8	n	0.13	3.5	23	3;4	23	y	0.10	3.5	30	1;6	30	n	0.18	5.5	25	1;10	25	n	0.23	3.0	10	1;5	10	n	0.20	5.5	22	0;11	22	n	0.22	2.0	7	0;4	7	n	0.10	2.0	18	0;4	18	n	0.15	7.0	39	2;12	39	y	0.00	0.0	30	0;0	30	n	0.12	2.5	19	1;4	19	n	ENSMUSG00000038145.18	Snrk	chr9	protein_coding	SNF related kinase
known_NIR_19698	chr9	121963142	121965972	+	121946473	121965972	A5SS	ENSMUST00000120173.9	known	0.80	4	1	4	1	n	0.75	3	1	3	1	n	1.00	4	0	4	0	n	0.50	6	6	6	6	y	1.00	10	0	10	0	n	1.00	5	0	5	0	n	0.92	11	1	11	1	n	0.80	4	1	4	1	n	0.57	4	3	4	3	n	0.75	12	4	12	4	y	0.00	0	1	0	1	n	0.57	4	3	4	3	n	ENSMUSG00000038145.18	Snrk	chr9	protein_coding	SNF related kinase
known_NIR_19699	chr9	121963142	121965972	+	121961008	121965972	A5SS	ENSMUST00000118886.9	known	0.36	4	7	4	7	y	0.60	3	2	3	2	n	0.57	4	3	4	3	n	0.60	6	4	6	4	y	0.53	10	9	10	9	y	0.71	5	2	5	2	n	0.46	11	13	11	13	y	0.29	4	10	4	10	y	0.50	4	4	4	4	n	0.48	12	13	12	13	y	0.00	0	7	0	7	n	0.25	4	12	4	12	y	ENSMUSG00000038145.18	Snrk	chr9	protein_coding	SNF related kinase
known_NIR_19700	chr9	122005544	122016592	-	122005544	122030837	A5SS	ENSMUST00000042546.4	known	0.00	0	56	0	56	n	0.00	0	59	0	59	n	0.00	0	94	0	94	n	0.00	0	35	0	35	n	0.00	0	67	0	67	n	0.00	0	41	0	41	n	0.04	4	105	4	105	y	0.00	0	56	0	56	n	0.00	0	37	0	37	n	0.00	0	58	0	58	n	0.00	0	37	0	37	n	0.00	0	48	0	48	n	ENSMUSG00000037949.9	Ano10	chr9	protein_coding	anoctamin 10
known_NIR_19701	chr9	122011938	122030837	-	122005544	122030837	A3SS	ENSMUST00000042546.4	known	0.03	2	56	2	56	y	0.00	0	59	0	59	n	0.01	1	94	1	94	n	0.05	2	35	2	35	y	0.03	2	67	2	67	y	0.00	0	41	0	41	n	0.02	2	105	2	105	y	0.00	0	56	0	56	n	0.05	2	37	2	37	y	0.02	1	58	1	58	n	0.00	0	37	0	37	n	0.11	6	48	6	48	y	ENSMUSG00000037949.9	Ano10	chr9	protein_coding	anoctamin 10
known_NIR_19702	chr9	122090545	122092736	-	122090719	122092736	A3SS	ENSMUST00000042546.4	known	0.00	0	19	0	19	n	0.00	0	9	0	9	n	0.04	2	45	2	45	y	0.00	0	33	0	33	n	0.00	0	26	0	26	n	0.00	0	45	0	45	n	0.00	0	38	0	38	n	0.00	0	27	0	27	n	0.07	1	13	1	13	n	0.00	0	26	0	26	n	0.00	0	12	0	12	n	0.00	0	28	0	28	n	ENSMUSG00000037949.9	Ano10	chr9	protein_coding	anoctamin 10
known_NIR_19703	chr9	122092855	122100176	-	122092855	122100265	A5SS	ENSMUST00000042546.4	known	0.00	0	29	0	29	n	0.00	0	12	0	12	n	0.02	1	55	1	55	n	0.05	2	39	2	39	y	0.00	0	41	0	41	n	0.00	0	40	0	40	n	0.00	0	42	0	42	n	0.00	0	25	0	25	n	0.00	0	22	0	22	n	0.00	0	39	0	39	n	0.00	0	15	0	15	n	0.00	0	34	0	34	n	ENSMUSG00000037949.9	Ano10	chr9	protein_coding	anoctamin 10
known_NIR_19704	chr9	122107193	122123370	-	122104729	122123370	A3SS	ENSMUST00000042546.4	known	0.10	2	18	2	18	y	0.00	0	17	0	17	n	0.04	2	43	2	43	y	0.00	0	26	0	26	n	0.00	0	27	0	27	n	0.09	2	20	2	20	y	0.00	0	19	0	19	n	0.00	0	24	0	24	n	0.08	1	11	1	11	n	0.00	0	23	0	23	n	0.00	0	14	0	14	n	0.00	0	16	0	16	n	ENSMUSG00000037949.9	Ano10	chr9	protein_coding	anoctamin 10
known_NIR_19705	chr9	122180904	122194201	+	122180904	122204971	A3SS	ENSMUST00000111497.5	known	0.97	37	1	37	1	n	1.00	22	0	22	0	n	1.00	56	0	56	0	n	1.00	28	0	28	0	n	1.00	47	0	47	0	n	1.00	34	0	34	0	n	0.94	31	2	31	2	y	0.95	37	2	37	2	y	0.94	33	2	33	2	y	0.96	45	2	45	2	y	0.98	47	1	47	1	n	0.93	42	3	42	3	y	ENSMUSG00000032540.17	Abhd5	chr9	protein_coding	abhydrolase domain containing 5
known_NIR_19706	chr9	122180904	122196954	+	122180904;122194286	122194201;122196954	ES	ENSMUST00000156520.8	known	0.00	0	43.0	0	37;49	n	0.10	4	36.5	4	22;51	y	0.00	0	87.5	0	56;119	n	0.00	0	51.0	0	28;74	n	0.00	0	73.5	0	47;100	n	0.10	4	37.0	4	34;40	y	0.07	4	52.0	4	31;73	y	0.00	0	49.0	0	37;61	n	0.02	1	48.5	1	33;64	n	0.06	4	62.0	4	45;79	y	0.03	2	67.5	2	47;88	y	0.00	0	64.5	0	42;87	n	ENSMUSG00000032540.17	Abhd5	chr9	protein_coding	abhydrolase domain containing 5
known_NIR_19707	chr9	122180904;122194302	122194201;122196954	+	122180904	122196954	cassetteExon	ENSMUST00000175973.2	known	1.00	18.5	0	37;0	0	n	0.73	11.0	4	22;0	4	n	1.00	28.0	0	56;0	0	n	1.00	14.0	0	28;0	0	n	1.00	23.5	0	47;0	0	n	0.81	17.0	4	34;0	4	n	0.80	16.5	4	31;2	4	y	1.00	19.5	0	37;2	0	n	0.94	16.5	1	33;0	1	n	0.85	22.5	4	45;0	4	n	0.92	23.5	2	47;0	2	n	1.00	21.0	0	42;0	0	n	ENSMUSG00000032540.17	Abhd5	chr9	protein_coding	abhydrolase domain containing 5
known_NIR_19708	chr9	122180904;122197326	122196954;122204971	+	122180904	122204971	cassetteExon	ENSMUST00000111497.5	known	0.98	45.0	1	0;90	1	n	1.00	41.5	0	4;79	0	n	1.00	82.0	0	0;164	0	n	1.00	62.0	0	0;124	0	n	1.00	58.5	0	0;117	0	n	1.00	34.0	0	4;64	0	n	0.97	70.0	2	4;136	2	y	0.95	41.0	2	0;82	2	n	0.96	50.0	2	1;99	2	n	0.96	54.0	2	4;104	2	y	0.99	70.5	1	2;139	1	n	0.93	43.0	3	0;86	3	n	ENSMUSG00000032540.17	Abhd5	chr9	protein_coding	abhydrolase domain containing 5
known_NIR_19709	chr9	122194302	122196954	+	122194286	122196954	A5SS	ENSMUST00000156520.8	known	0.00	0	49	0	49	n	0.00	0	51	0	51	n	0.00	0	119	0	119	n	0.00	0	74	0	74	n	0.00	0	100	0	100	n	0.00	0	40	0	40	n	0.03	2	73	2	73	y	0.03	2	61	2	61	y	0.00	0	64	0	64	n	0.00	0	79	0	79	n	0.00	0	88	0	88	n	0.00	0	87	0	87	n	ENSMUSG00000032540.17	Abhd5	chr9	protein_coding	abhydrolase domain containing 5
known_NIR_19710	chr9	122637901	122640746	+	122637901	122640823	A3SS	ENSMUST00000052740.14	known	0.00	0	36	0	36	n	0.00	0	10	0	10	n	0.00	0	25	0	25	n	0.03	1	37	1	37	n	0.00	0	33	0	33	n	0.00	0	28	0	28	n	0.00	0	32	0	32	n	0.00	0	25	0	25	n	0.00	0	22	0	22	n	0.07	3	37	3	37	y	0.00	0	25	0	25	n	0.05	2	37	2	37	y	ENSMUSG00000046603.17	Tcaim	chr9	protein_coding	T cell activation inhibitor, mitochondrial
known_NIR_19711	chr9	122643653	122647915	+	122643653	122647839	A3SS	ENSMUST00000052740.14	known	0.11	4	31	4	31	y	0.24	5	16	5	16	y	0.14	6	36	6	36	y	0.32	14	30	14	30	y	0.29	12	29	12	29	y	0.32	9	19	9	19	y	0.36	15	27	15	27	y	0.13	4	27	4	27	y	0.12	3	21	3	21	y	0.19	10	42	10	42	y	0.17	6	29	6	29	y	0.16	6	31	6	31	y	ENSMUSG00000046603.17	Tcaim	chr9	protein_coding	T cell activation inhibitor, mitochondrial
known_NIR_19712	chr9	122685890	122686132	-	122685890	122686168	A5SS	ENSMUST00000214626.2	known	0.04	1	25	1	25	n	0.26	7	20	7	20	y	0.12	6	45	6	45	y	0.13	9	59	9	59	y	0.12	7	52	7	52	y	0.21	6	22	6	22	y	0.09	5	50	5	50	y	0.19	11	46	11	46	y	0.12	3	23	3	23	y	0.18	9	41	9	41	y	0.16	4	21	4	21	y	0.22	12	42	12	42	y	ENSMUSG00000047036.9	Zfp445	chr9	protein_coding	zinc finger protein 445
known_NIR_19713	chr9	122691409	122694802	-	122691409	122694979	A5SS	ENSMUST00000216721.2	known	0.08	3	36	3	36	y	0.20	4	16	4	16	y	0.38	17	28	17	28	y	0.25	12	36	12	36	y	0.28	15	38	15	38	y	0.24	6	19	6	19	y	0.06	3	47	3	47	y	0.18	8	36	8	36	y	0.19	5	22	5	22	y	0.30	14	32	14	32	y	0.00	0	16	0	16	n	0.05	2	37	2	37	y	ENSMUSG00000047036.9	Zfp445	chr9	protein_coding	zinc finger protein 445
known_NIR_19714	chr9	122691409	122694979	-	122691324	122694979	A3SS	ENSMUST00000216063.2	known	0.90	36	4	36	4	y	0.80	16	4	16	4	y	0.78	28	8	28	8	y	0.73	36	13	36	13	y	0.84	38	7	38	7	y	0.95	19	1	19	1	n	0.77	47	14	47	14	y	0.95	36	2	36	2	y	0.88	22	3	22	3	y	0.76	32	10	32	10	y	1.00	16	0	16	0	n	0.90	37	4	37	4	y	ENSMUSG00000047036.9	Zfp445	chr9	protein_coding	zinc finger protein 445
known_NIR_19715	chr9	122777173	122779870	-	122777173;122778134	122777990;122779870	ES	ENSMUST00000035154.4	known	0.05	4	77.5	4	99;56	y	0.13	9	62.5	9	63;62	y	0.03	3	86.0	3	95;77	y	0.06	4	61.5	4	74;49	y	0.09	7	67.0	7	75;59	y	0.05	2	37.0	2	48;26	y	0.04	4	105.0	4	104;106	y	0.10	6	53.5	6	48;59	y	0.09	4	41.5	4	49;34	y	0.08	6	72.0	6	83;61	y	0.03	2	59.0	2	69;49	y	0.10	10	86.0	10	100;72	y	ENSMUSG00000032551.8	1110059G10Rik	chr9	protein_coding	RIKEN cDNA 1110059G10 gene
known_NIR_19716	chr9	122851377	122852483	+	122851377	122851904	A3SS	ENSMUST00000084733.7	known	0.03	1	38	1	38	n	0.00	0	28	0	28	n	0.02	1	43	1	43	n	0.02	1	48	1	48	n	0.00	0	46	0	46	n	0.00	0	23	0	23	n	0.00	0	48	0	48	n	0.07	2	25	2	25	y	0.00	0	36	0	36	n	0.04	3	65	3	65	y	0.06	2	33	2	33	y	0.00	0	62	0	62	n	ENSMUSG00000066233.7	Tmem42	chr9	protein_coding	transmembrane protein 42
known_NIR_19717	chr9	122907386	122909416	-	122899683	122909416	A3SS	ENSMUST00000140497.8	known	0.72	46	18	46	18	y	0.80	41	10	41	10	y	0.81	71	17	71	17	y	0.71	54	22	54	22	y	0.81	59	14	59	14	y	0.80	41	10	41	10	y	0.71	60	24	60	24	y	0.79	45	12	45	12	y	0.83	45	9	45	9	y	0.75	67	22	67	22	y	0.74	35	12	35	12	y	0.77	44	13	44	13	y	ENSMUSG00000025786.18	Zdhhc3	chr9	protein_coding	zinc finger, DHHC domain containing 3
known_NIR_19718	chr9	122913375	122927988	-	122913375;122918221	122918097;122927988	ES	ENSMUST00000026892.15	known	0.00	0	30.5	0	57;4	n	0.00	0	26.5	0	50;3	n	0.03	1	37.0	1	72;2	n	0.05	2	36.5	2	65;8	y	0.00	0	45.0	0	78;12	n	0.00	0	25.0	0	49;1	n	0.00	0	31.5	0	60;3	n	0.00	0	20.5	0	38;3	n	0.04	1	23.0	1	43;3	n	0.00	0	38.0	0	73;3	n	0.00	0	28.5	0	54;3	n	0.00	0	29.0	0	57;1	n	ENSMUSG00000025786.18	Zdhhc3	chr9	protein_coding	zinc finger, DHHC domain containing 3
known_NIR_19719	chr9	122913375	122929328	-	122913375	122918097	A5SS&ES	ENSMUST00000140497.8	known	0.00	0	57	0	57	n	0.02	1	50	1	50	n	0.05	4	72	4	72	y	0.00	0	65	0	65	n	0.01	1	78	1	78	n	0.00	0	49	0	49	n	0.00	0	60	0	60	n	0.12	5	38	5	38	y	0.00	0	43	0	43	n	0.00	0	73	0	73	n	0.00	0	54	0	54	n	0.00	0	57	0	57	n	ENSMUSG00000025786.18	Zdhhc3	chr9	protein_coding	zinc finger, DHHC domain containing 3
known_NIR_19720	chr9	122913375	122929328	-	122913375;122918221	122918097;122929328	ES	ENSMUST00000238520.2	known	0.00	0	50.5	0	57;44	n	0.02	1	41.5	1	50;33	n	0.05	4	74.0	4	72;76	y	0.00	0	53.0	0	65;41	n	0.01	1	71.0	1	78;64	n	0.00	0	47.5	0	49;46	n	0.00	0	53.5	0	60;47	n	0.10	5	45.5	5	38;53	y	0.00	0	34.0	0	43;25	n	0.00	0	67.0	0	73;61	n	0.00	0	39.0	0	54;24	n	0.00	0	48.0	0	57;39	n	ENSMUSG00000025786.18	Zdhhc3	chr9	protein_coding	zinc finger, DHHC domain containing 3
known_NIR_19721	chr9	122913375;122928039	122927988;122929328	-	122913375;122918221	122918097;122929328	MXE	ENSMUST00000238520.2	known	0.04	2.0	50.5	0;4	57;44	n	0.02	1.0	41.5	0;2	50;33	n	0.04	3.0	74.0	1;5	72;76	n	0.09	5.5	53.0	2;9	65;41	y	0.11	9.0	71.0	0;18	78;64	n	0.04	2.0	47.5	0;4	49;46	n	0.05	3.0	53.5	0;6	60;47	n	0.01	0.5	45.5	0;1	38;53	n	0.01	0.5	34.0	1;0	43;25	n	0.04	3.0	67.0	0;6	73;61	n	0.00	0.0	39.0	0;0	54;24	n	0.06	3.0	48.0	0;6	57;39	n	ENSMUSG00000025786.18	Zdhhc3	chr9	protein_coding	zinc finger, DHHC domain containing 3
known_NIR_19722	chr9	122913375;122928039	122927988;122929328	-	122913375;122920197	122918097;122929328	MXE	ENSMUST00000138622.8	known	0.07	2.0	28.5	0;4	57;0	n	0.04	1.0	27.5	0;2	50;5	n	0.08	3.0	36.0	1;5	72;0	n	0.14	5.5	33.5	2;9	65;2	y	0.18	9.0	40.5	0;18	78;3	n	0.07	2.0	25.5	0;4	49;2	n	0.09	3.0	30.0	0;6	60;0	n	0.03	0.5	19.0	0;1	38;0	n	0.02	0.5	21.5	1;0	43;0	n	0.08	3.0	36.5	0;6	73;0	n	0.00	0.0	27.0	0;0	54;0	n	0.10	3.0	28.5	0;6	57;0	n	ENSMUSG00000025786.18	Zdhhc3	chr9	protein_coding	zinc finger, DHHC domain containing 3
known_NIR_19723	chr9	122918221	122920042	-	122918221	122927988	A5SS	ENSMUST00000129862.2	known	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.50	2	2	2	2	n	0.20	2	8	2	8	y	0.25	4	12	4	12	y	0.67	2	1	2	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.67	2	1	2	1	n	ENSMUSG00000025786.18	Zdhhc3	chr9	protein_coding	zinc finger, DHHC domain containing 3
known_NIR_19724	chr9	122918221	122929324	-	122918221	122927988	A5SS&ES	ENSMUST00000026892.15	known	0.33	2	4	2	4	n	0.40	2	3	2	3	n	0.33	1	2	1	2	n	0.00	0	8	0	8	n	0.25	4	12	4	12	y	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.40	2	3	2	3	n	0.25	1	3	1	3	n	0.50	3	3	3	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000025786.18	Zdhhc3	chr9	protein_coding	zinc finger, DHHC domain containing 3
known_NIR_19725	chr9	122918221	122929328	-	122918221	122927988	A5SS&ES	ENSMUST00000129862.2	known	0.92	44	4	44	4	y	0.92	33	3	33	3	y	0.97	76	2	76	2	y	0.84	41	8	41	8	y	0.84	64	12	64	12	y	0.98	46	1	46	1	n	0.94	47	3	47	3	y	0.95	53	3	53	3	y	0.89	25	3	25	3	y	0.95	61	3	61	3	y	0.89	24	3	24	3	y	0.97	39	1	39	1	n	ENSMUSG00000025786.18	Zdhhc3	chr9	protein_coding	zinc finger, DHHC domain containing 3
known_NIR_19726	chr9	122918221	122929328	-	122918221	122929324	A5SS	ENSMUST00000140497.8	known	0.96	44	2	44	2	y	0.94	33	2	33	2	y	0.99	76	1	76	1	n	1.00	41	0	41	0	n	0.94	64	4	64	4	y	0.98	46	1	46	1	n	1.00	47	0	47	0	n	0.96	53	2	53	2	y	0.96	25	1	25	1	n	0.95	61	3	61	3	y	1.00	24	0	24	0	n	1.00	39	0	39	0	n	ENSMUSG00000025786.18	Zdhhc3	chr9	protein_coding	zinc finger, DHHC domain containing 3
known_NIR_19727	chr9	122918221;122920197	122920042;122929328	-	122918221	122929328	cassetteExon	ENSMUST00000238520.2	known	0.00	0.0	44	0;0	44	n	0.08	3.0	33	1;5	33	n	0.01	1.0	76	2;0	76	n	0.05	2.0	41	2;2	41	y	0.05	3.5	64	4;3	64	y	0.04	2.0	46	2;2	46	y	0.00	0.0	47	0;0	47	n	0.00	0.0	53	0;0	53	n	0.00	0.0	25	0;0	25	n	0.00	0.0	61	0;0	61	n	0.00	0.0	24	0;0	24	n	0.03	1.0	39	2;0	39	n	ENSMUSG00000025786.18	Zdhhc3	chr9	protein_coding	zinc finger, DHHC domain containing 3
known_NIR_19728	chr9	122918221;122920197	122920042;122929328	-	122918221;122928039	122927988;122929328	MXE	ENSMUST00000026892.15	known	0.00	0.0	4.0	0;0	4;4	n	0.55	3.0	2.5	1;5	3;2	n	0.22	1.0	3.5	2;0	2;5	n	0.19	2.0	8.5	2;2	8;9	y	0.19	3.5	15.0	4;3	12;18	y	0.44	2.0	2.5	2;2	1;4	n	0.00	0.0	4.5	0;0	3;6	n	0.00	0.0	2.0	0;0	3;1	n	0.00	0.0	1.5	0;0	3;0	n	0.00	0.0	4.5	0;0	3;6	n	0.00	0.0	1.5	0;0	3;0	n	0.22	1.0	3.5	2;0	1;6	n	ENSMUSG00000025786.18	Zdhhc3	chr9	protein_coding	zinc finger, DHHC domain containing 3
known_NIR_19729	chr9	122918221;122928039	122927988;122929328	-	122918221	122929328	cassetteExon	ENSMUST00000238520.2	known	0.08	4.0	44	4;4	44	y	0.07	2.5	33	3;2	33	y	0.04	3.5	76	2;5	76	y	0.17	8.5	41	8;9	41	y	0.19	15.0	64	12;18	64	y	0.05	2.5	46	1;4	46	n	0.09	4.5	47	3;6	47	y	0.04	2.0	53	3;1	53	n	0.06	1.5	25	3;0	25	n	0.07	4.5	61	3;6	61	y	0.06	1.5	24	3;0	24	n	0.08	3.5	39	1;6	39	n	ENSMUSG00000025786.18	Zdhhc3	chr9	protein_coding	zinc finger, DHHC domain containing 3
known_NIR_19730	chr9	122920197	122929328	-	122928039	122929328	A3SS&ES	ENSMUST00000152396.8	known	0.00	0	4	0	4	n	0.71	5	2	5	2	n	0.00	0	5	0	5	n	0.18	2	9	2	9	y	0.14	3	18	3	18	y	0.33	2	4	2	4	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	6	0	6	n	ENSMUSG00000025786.18	Zdhhc3	chr9	protein_coding	zinc finger, DHHC domain containing 3
known_NIR_19731	chr9	122929657	122942061	-	122929657	122941499	5pMXE	ENSMUST00000130717.2	known	1.00	37	0	37	0	n	1.00	35	0	35	0	n	0.97	60	2	60	2	y	0.98	41	1	41	1	n	0.97	59	2	59	2	y	1.00	40	0	40	0	n	1.00	45	0	45	0	n	1.00	40	0	40	0	n	1.00	31	0	31	0	n	0.94	48	3	48	3	y	0.95	39	2	39	2	y	1.00	20	0	20	0	n	ENSMUSG00000025786.18	Zdhhc3	chr9	protein_coding	zinc finger, DHHC domain containing 3
known_NIR_19732	chr9	122942387	122947960	+	122942387	122947956	A3SS	ENSMUST00000026891.5	known	0.00	0	79	0	79	n	0.00	0	79	0	79	n	0.05	4	72	4	72	y	0.04	4	101	4	101	y	0.01	1	98	1	98	n	0.00	0	44	0	44	n	0.00	0	95	0	95	n	0.06	3	49	3	49	y	0.00	0	78	0	78	n	0.00	0	105	0	105	n	0.00	0	82	0	82	n	0.00	0	95	0	95	n	ENSMUSG00000025785.6	Exosc7	chr9	protein_coding	exosome component 7
known_NIR_19733	chr9	123339249	123339573	+	123329297	123339573	A5SS	ENSMUST00000026269.4	known	0.00	0	28	0	28	n	0.00	0	26	0	26	n	0.00	0	35	0	35	n	0.00	0	43	0	43	n	0.00	0	45	0	45	n	0.00	0	18	0	18	n	0.00	0	43	0	43	n	0.00	0	22	0	22	n	0.00	0	34	0	34	n	0.00	0	48	0	48	n	0.07	2	28	2	28	y	0.00	0	49	0	49	n	ENSMUSG00000025239.4	Limd1	chr9	protein_coding	LIM domains containing 1
known_NIR_19734	chr9	123358986	123376049	+	123358986;123371506	123371409;123376049	ES	ENSMUST00000026270.9	known	0.00	0	27.0	0	23;31	n	0.00	0	20.5	0	14;27	n	0.00	0	55.0	0	48;62	n	0.00	0	64.0	0	56;72	n	0.00	0	68.0	0	55;81	n	0.04	2	45.5	2	37;54	y	0.00	0	54.0	0	43;65	n	0.03	1	33.5	1	17;50	n	0.07	2	28.0	2	20;36	y	0.00	0	56.5	0	50;63	n	0.00	0	29.5	0	25;34	n	0.02	1	63.0	1	42;84	n	ENSMUSG00000025240.11	Sacm1l	chr9	protein_coding	SAC1 suppressor of actin mutations 1-like (yeast)
known_NIR_19735	chr9	123541689	123546591	-	123544489	123546591	3pMXE	ENSMUST00000165799.2	known	0.20	2	8	2	8	y	0.00	0	6	0	6	n	0.12	3	23	3	23	y	0.00	0	17	0	17	n	0.15	4	22	4	22	y	0.14	1	6	1	6	n	0.10	2	19	2	19	y	0.31	4	9	4	9	y	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.08	1	12	1	12	n	0.15	2	11	2	11	y	ENSMUSG00000025245.15	Lztfl1	chr9	protein_coding	leucine zipper transcription factor-like 1
known_NIR_19736	chr9	123541689;123544489	123544365;123546591	-	123541689	123546591	cassetteExon	ENSMUST00000165754.8	known	0.85	11.5	2	15;8	2	y	1.00	12.0	0	18;6	0	n	0.91	31.5	3	40;23	3	y	1.00	22.5	0	28;17	0	n	0.87	26.0	4	30;22	4	y	0.93	12.5	1	19;6	1	n	0.93	27.5	2	36;19	2	y	0.79	15.5	4	22;9	4	y	1.00	10.0	0	14;6	0	n	1.00	32.0	0	49;15	0	n	0.94	14.5	1	17;12	1	n	0.89	17.0	2	23;11	2	y	ENSMUSG00000025245.15	Lztfl1	chr9	protein_coding	leucine zipper transcription factor-like 1
known_NIR_19737	chr9	123544485	123546591	-	123544489	123546591	A3SS	ENSMUST00000166097.8	known	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.04	1	23	1	23	n	0.11	2	17	2	17	y	0.04	1	22	1	22	n	0.00	0	6	0	6	n	0.05	1	19	1	19	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.08	1	12	1	12	n	0.00	0	11	0	11	n	ENSMUSG00000025245.15	Lztfl1	chr9	protein_coding	leucine zipper transcription factor-like 1
known_NIR_19738	chr9	123672673	123673568	-	123672673	123680846	A5SS	ENSMUST00000167595.9	known	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	15	0	15	n	0.00	0	20	0	20	n	0.00	0	40	0	40	n	0.00	0	10	0	10	n	0.25	10	30	10	30	y	0.00	0	21	0	21	n	0.00	0	14	0	14	n	0.00	0	29	0	29	n	0.00	0	19	0	19	n	0.00	0	23	0	23	n	ENSMUSG00000025241.17	Fyco1	chr9	protein_coding	FYVE and coiled-coil domain containing 1
known_NIR_19739	chr9	124058114	124067286	-	124058114	124074306	A5SS	ENSMUST00000189915.7	known	0.00	0	16	0	16	n	0.00	0	26	0	26	n	0.10	3	27	3	27	y	0.09	2	21	2	21	y	0.03	1	31	1	31	n	0.00	0	27	0	27	n	0.00	0	39	0	39	n	0.03	1	29	1	29	n	0.08	2	22	2	22	y	0.00	0	22	0	22	n	0.00	0	17	0	17	n	0.00	0	17	0	17	n	ENSMUSG00000074829.11	2010315B03Rik	chr9	protein_coding	RIKEN cDNA 2010315B03 gene
known_NIR_19740	chr9	124058114	124075190	-	124058114	124074306	5pMXE	ENSMUST00000189915.7	known	0.36	9	16	9	16	y	0.00	0	26	0	26	n	0.07	2	27	2	27	y	0.16	4	21	4	21	y	0.24	10	31	10	31	y	0.07	2	27	2	27	y	0.09	4	39	4	39	y	0.15	5	29	5	29	y	0.19	5	22	5	22	y	0.19	5	22	5	22	y	0.32	8	17	8	17	y	0.29	7	17	7	17	y	ENSMUSG00000074829.11	2010315B03Rik	chr9	protein_coding	RIKEN cDNA 2010315B03 gene
known_NIR_19741	chr9	124058114;124074380	124074306;124075190	-	124058114	124075190	cassetteExon	ENSMUST00000177714.8	known	0.58	12.5	9	16;9	9	y	1.00	15.5	0	26;5	0	n	0.89	15.5	2	27;4	2	y	0.80	16.0	4	21;11	4	y	0.68	21.5	10	31;12	10	y	0.90	19.0	2	27;11	2	y	0.85	22.5	4	39;6	4	y	0.76	16.0	5	29;3	5	y	0.74	14.0	5	22;6	5	y	0.76	16.0	5	22;10	5	y	0.62	13.0	8	17;9	8	y	0.60	10.5	7	17;4	7	y	ENSMUSG00000074829.11	2010315B03Rik	chr9	protein_coding	RIKEN cDNA 2010315B03 gene
known_NIR_19742	chr9	124058114;124074380	124074306;124075190	-	124058114;124067348	124067286;124075190	MXE	ENSMUST00000071300.13	known	0.96	12.5	0.5	16;9	0;1	n	0.97	15.5	0.5	26;5	0;1	n	0.86	15.5	2.5	27;4	3;2	y	0.89	16.0	2.0	21;11	2;2	y	0.98	21.5	0.5	31;12	1;0	n	1.00	19.0	0.0	27;11	0;0	n	0.98	22.5	0.5	39;6	0;1	n	0.91	16.0	1.5	29;3	1;2	n	0.93	14.0	1.0	22;6	2;0	n	0.97	16.0	0.5	22;10	0;1	n	1.00	13.0	0.0	17;9	0;0	n	1.00	10.5	0.0	17;4	0;0	n	ENSMUSG00000074829.11	2010315B03Rik	chr9	protein_coding	RIKEN cDNA 2010315B03 gene
known_NIR_19743	chr9	124064353	124067286	-	124058114	124067286	A3SS	ENSMUST00000071300.13	known	1.00	5	0	5	0	n	1.00	3	0	3	0	n	0.81	13	3	13	3	y	0.83	10	2	10	2	y	0.86	6	1	6	1	n	1.00	6	0	6	0	n	1.00	2	0	2	0	n	0.00	0	1	0	1	n	0.60	3	2	3	2	n	1.00	6	0	6	0	n	1.00	6	0	6	0	n	1.00	3	0	3	0	n	ENSMUSG00000074829.11	2010315B03Rik	chr9	protein_coding	RIKEN cDNA 2010315B03 gene
known_NIR_19744	chr9	124074380	124075190	-	124067348	124075190	A3SS	ENSMUST00000186041.2	known	0.90	9	1	9	1	n	0.83	5	1	5	1	n	0.67	4	2	4	2	n	0.85	11	2	11	2	y	1.00	12	0	12	0	n	1.00	11	0	11	0	n	0.86	6	1	6	1	n	0.60	3	2	3	2	n	1.00	6	0	6	0	n	0.91	10	1	10	1	n	1.00	9	0	9	0	n	1.00	4	0	4	0	n	ENSMUSG00000074829.11	2010315B03Rik	chr9	protein_coding	RIKEN cDNA 2010315B03 gene
known_NIR_19745	chr9	124196747	124197153	+	124196069	124197153	A5SS	ENSMUST00000239563.2	known	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.22	2	7	2	7	n	0.17	1	5	1	5	n	0.33	4	8	4	8	y	0.38	3	5	3	5	n	0.69	11	5	11	5	y	0.75	3	1	3	1	n	0.56	5	4	5	4	n	0.59	10	7	10	7	y	0.50	2	2	2	2	n	0.60	3	2	3	2	n	ENSMUSG00000093803.6	Ppp2r3d	chr9	protein_coding	protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta
known_NIR_19746	chr9	124201025	124201277	+	124201056	124201277	A5SS	ENSMUST00000239563.2	known	0.08	3	34	3	34	y	0.08	4	47	4	47	y	0.07	3	42	3	42	y	0.06	3	45	3	45	y	0.11	6	48	6	48	y	0.09	3	31	3	31	y	0.06	3	44	3	44	y	0.10	3	26	3	26	y	0.00	0	35	0	35	n	0.02	1	53	1	53	n	0.12	3	23	3	23	y	0.00	0	34	0	34	n	ENSMUSG00000093803.6	Ppp2r3d	chr9	protein_coding	protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta
known_NIR_19747	chr9	13246676;13248967	13248884;13251696	+	13246676	13251696	cassetteExon	ENSMUST00000217444.4	known	0.33	3.0	6	2;4	6	y	0.00	0.0	2	0;0	2	n	0.22	2.0	7	0;4	7	n	0.00	0.0	2	0;0	2	n	1.00	1.5	0	2;1	0	n	0.33	0.5	1	0;1	1	n	1.00	0.5	0	1;0	0	n	0.00	0.0	3	0;0	3	n	0.33	0.5	1	1;0	1	n	0.20	0.5	2	0;1	2	n	0.25	2.0	6	2;2	6	y	0.56	2.5	2	1;4	2	n	ENSMUSG00000079084.13	Ccdc82	chr9	protein_coding	coiled-coil domain containing 82
known_NIR_19748	chr9	13660696;13671784	13671714;13693573	+	13660696	13693573	cassetteExon	ENSMUST00000034396.14	known	0.46	8.5	10	6;11	10	y	0.53	4.5	4	3;6	4	y	0.40	10.5	16	6;15	16	y	0.33	9.5	19	11;8	19	y	0.25	8.0	24	8;8	24	y	0.17	3.5	17	2;5	17	y	0.29	7.0	17	9;5	17	y	0.28	5.0	13	2;8	13	y	0.30	6.0	14	5;7	14	y	0.27	8.5	23	7;10	23	y	0.50	7.0	7	4;10	7	y	0.48	21.5	23	18;25	23	y	ENSMUSG00000031918.17	Mtmr2	chr9	protein_coding	myotubularin related protein 2
known_NIR_19749	chr9	13693678	13697148	+	13693678	13694902	3pMXE	ENSMUST00000136735.8	known	0.60	15	10	15	10	y	0.60	9	6	9	6	y	0.67	22	11	22	11	y	0.62	35	21	35	21	y	0.51	22	21	22	21	y	0.52	15	14	15	14	y	0.60	26	17	26	17	y	0.57	20	15	20	15	y	0.62	13	8	13	8	y	0.75	30	10	30	10	y	0.81	21	5	21	5	y	0.67	34	17	34	17	y	ENSMUSG00000031918.17	Mtmr2	chr9	protein_coding	myotubularin related protein 2
known_NIR_19750	chr9	13693678;13695006	13694902;13697148	+	13693678	13697148	cassetteExon	ENSMUST00000034396.14	known	0.48	14.0	15	10;18	15	y	0.49	8.5	9	6;11	9	y	0.38	13.5	22	11;16	22	y	0.38	21.5	35	21;22	35	y	0.51	23.0	22	21;25	22	y	0.52	16.5	15	14;19	15	y	0.35	14.0	26	17;11	26	y	0.33	10.0	20	15;5	20	y	0.46	11.0	13	8;14	13	y	0.29	12.0	30	10;14	30	y	0.33	10.5	21	5;16	21	y	0.35	18.0	34	17;19	34	y	ENSMUSG00000031918.17	Mtmr2	chr9	protein_coding	myotubularin related protein 2
known_NIR_19751	chr9	13722158	13724706	-	13722158;13724006	13723929;13724706	ES	ENSMUST00000034398.12	known	0.11	2	17.0	2	21;13	y	0.07	1	13.0	1	9;17	n	0.23	7	23.5	7	25;22	y	0.19	3	13.0	3	14;12	y	0.09	2	19.5	2	19;20	y	0.11	1	8.0	1	9;7	n	0.00	0	20.5	0	16;25	n	0.18	2	9.0	2	11;7	y	0.17	2	10.0	2	15;5	y	0.11	3	25.0	3	31;19	y	0.05	1	18.5	1	20;17	n	0.13	3	20.0	3	17;23	y	ENSMUSG00000031922.13	Cep57	chr9	protein_coding	centrosomal protein 57
known_NIR_19752	chr9	13732979	13737838	-	13732979	13738152	A5SS	ENSMUST00000142494.8	known	0.00	0	9	0	9	n	0.20	1	4	1	4	n	0.05	1	19	1	19	n	0.00	0	16	0	16	n	0.00	0	10	0	10	n	0.10	1	9	1	9	n	0.10	2	18	2	18	y	0.00	0	5	0	5	n	0.21	3	11	3	11	y	0.00	0	19	0	19	n	0.17	1	5	1	5	n	0.05	1	21	1	21	n	ENSMUSG00000031922.13	Cep57	chr9	protein_coding	centrosomal protein 57
known_NIR_19753	chr9	13747479;13748012	13747955;13748133	+	13747479	13748133	cassetteExon	ENSMUST00000059579.12	known	0.57	6.5	5	8;5	5	y	0.25	1.0	3	2;0	3	n	0.02	0.5	23	0;1	23	n	0.13	1.5	10	2;1	10	n	0.40	8.0	12	7;9	12	y	0.14	1.0	6	2;0	6	n	0.07	0.5	7	1;0	7	n	0.33	2.5	5	4;1	5	n	0.54	3.5	3	4;3	3	y	0.38	7.5	12	7;8	12	y	0.20	0.5	2	1;0	2	n	0.23	4.5	15	5;4	15	y	ENSMUSG00000037808.14	Fam76b	chr9	protein_coding	family with sequence similarity 76, member B
known_NIR_19754	chr9	14412039	14413212	+	14412077	14413212	A5SS	ENSMUST00000004200.9	known	0.07	17	212	17	212	y	0.06	12	205	12	205	y	0.06	14	229	14	229	y	0.08	22	239	22	239	y	0.08	20	243	20	243	y	0.09	13	124	13	124	y	0.05	14	257	14	257	y	0.13	17	109	17	109	y	0.09	17	170	17	170	y	0.07	20	265	20	265	y	0.05	11	202	11	202	y	0.07	18	253	18	253	y	ENSMUSG00000004096.10	Cwc15	chr9	protein_coding	CWC15 spliceosome-associated protein
known_NIR_19755	chr9	14507896	14545198	-	14507896	14526030	5pMXE	ENSMUST00000013220.8	known	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.83	10	2	10	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000013076.18	Amotl1	chr9	protein_coding	angiomotin-like 1
known_NIR_19756	chr9	14694258	14695536	-	14694258	14695757	A5SS	ENSMUST00000216037.2	known	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.45	5	6	5	6	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000031931.5	Ankrd49	chr9	protein_coding	ankyrin repeat domain 49
known_NIR_19757	chr9	14696103	14696727	+	14696053	14696727	A5SS	ENSMUST00000034405.11	known	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.33	4	8	4	8	y	0.00	0	2	0	2	n	0.18	2	9	2	9	y	0.00	0	2	0	2	n	0.33	2	4	2	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.75	3	1	3	1	n	-	-	-	-	-	-	0.50	3	3	3	3	n	ENSMUSG00000031928.16	Mre11a	chr9	protein_coding	MRE11A homolog A, double strand break repair nuclease
known_NIR_19758	chr9	15176765	15181639	-	15176765;15178847	15178710;15181639	ES	ENSMUST00000034411.10	known	0.17	7	34.5	7	44;25	y	0.25	9	27.5	9	36;19	y	0.04	2	52.0	2	70;34	y	0.12	4	30.5	4	36;25	y	0.09	4	41.0	4	63;19	y	0.09	2	20.0	2	24;16	y	0.17	6	29.5	6	35;24	y	0.20	5	20.0	5	17;23	y	0.00	0	24.0	0	30;18	n	0.08	4	45.5	4	55;36	y	0.03	1	30.0	1	37;23	n	0.11	5	42.0	5	48;36	y	ENSMUSG00000031935.10	Med17	chr9	protein_coding	mediator complex subunit 17
known_NIR_19759	chr9	15206055	15212663	-	15206055;15209237	15209139;15212663	ES	ENSMUST00000180339.8	known	0.01	2	183.0	2	176;190	y	0.02	2	118.5	2	96;141	y	0.00	0	129.0	0	126;132	n	0.02	7	310.5	7	282;339	y	0.02	6	257.0	6	221;293	y	0.01	1	72.5	1	67;78	n	0.02	6	240.5	6	205;276	y	0.01	1	104.5	1	94;115	n	0.01	3	217.0	3	186;248	y	0.03	10	358.5	10	326;391	y	0.04	9	220.0	9	221;219	y	0.00	0	217.0	0	199;235	n	ENSMUSG00000031938.16	4931406C07Rik	chr9	protein_coding	RIKEN cDNA 4931406C07 gene
known_NIR_19760	chr9	15206055	15212663	-	15209237	15212663	3pMXE	ENSMUST00000213317.2	known	0.01	2	190	2	190	y	0.01	2	141	2	141	y	0.00	0	132	0	132	n	0.02	7	339	7	339	y	0.02	6	293	6	293	y	0.01	1	78	1	78	n	0.02	6	276	6	276	y	0.01	1	115	1	115	n	0.01	3	248	3	248	y	0.02	10	391	10	391	y	0.04	9	219	9	219	y	0.00	0	235	0	235	n	ENSMUSG00000031938.16	4931406C07Rik	chr9	protein_coding	RIKEN cDNA 4931406C07 gene
known_NIR_19761	chr9	15217579	15219024	+	15217579	15218169	A3SS	ENSMUST00000214054.2	known	1.00	6	0	6	0	n	-	-	-	-	-	-	0.85	17	3	17	3	y	1.00	13	0	13	0	n	0.88	7	1	7	1	n	1.00	4	0	4	0	n	0.83	5	1	5	1	n	0.00	0	2	0	2	n	1.00	2	0	2	0	n	1.00	10	0	10	0	n	-	-	-	-	-	-	0.82	9	2	9	2	y	ENSMUSG00000031939.17	Taf1d	chr9	protein_coding	TATA-box binding protein associated factor, RNA polymerase I, D
known_NIR_19762	chr9	15217579;15218286	15218169;15219024	+	15217579	15219024	cassetteExon	ENSMUST00000034415.6	known	0.29	2.5	6	0;5	6	n	1.00	0.5	0	0;1	0	n	0.24	5.5	17	3;8	17	y	0.07	1.0	13	0;2	13	n	0.12	1.0	7	1;1	7	n	0.38	2.5	4	0;5	4	n	0.17	1.0	5	1;1	5	n	1.00	2.5	0	2;3	0	n	0.00	0.0	2	0;0	2	n	0.05	0.5	10	0;1	10	n	1.00	1.5	0	0;3	0	n	0.33	4.5	9	2;7	9	y	ENSMUSG00000031939.17	Taf1d	chr9	protein_coding	TATA-box binding protein associated factor, RNA polymerase I, D
known_NIR_19763	chr9	15222991	15223114	+	15222991	15224070	A3SS	ENSMUST00000214054.2	known	0.09	2	20	2	20	y	0.12	2	15	2	15	y	0.09	4	39	4	39	y	0.00	0	21	0	21	n	0.04	1	27	1	27	n	0.00	0	19	0	19	n	0.00	0	31	0	31	n	0.00	0	15	0	15	n	0.00	0	18	0	18	n	0.05	1	18	1	18	n	0.00	0	28	0	28	n	0.00	0	20	0	20	n	ENSMUSG00000031939.17	Taf1d	chr9	protein_coding	TATA-box binding protein associated factor, RNA polymerase I, D
known_NIR_19764	chr9	15222991	15224070	+	15222991	15223205	3pMXE	ENSMUST00000034415.6	known	0.83	20	4	20	4	y	0.88	15	2	15	2	y	0.95	39	2	39	2	y	0.91	21	2	21	2	y	0.96	27	1	27	1	n	1.00	19	0	19	0	n	1.00	31	0	31	0	n	1.00	15	0	15	0	n	0.95	18	1	18	1	n	0.86	18	3	18	3	y	0.74	28	10	28	10	y	0.77	20	6	20	6	y	ENSMUSG00000031939.17	Taf1d	chr9	protein_coding	TATA-box binding protein associated factor, RNA polymerase I, D
known_NIR_19765	chr9	15226772	15228185	+	15226736	15228185	A5SS	ENSMUST00000214054.2	known	0.00	0	5	0	5	n	0.19	4	17	4	17	y	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.11	2	17	2	17	y	0.09	1	10	1	10	n	0.00	0	11	0	11	n	0.06	1	16	1	16	n	ENSMUSG00000031939.17	Taf1d	chr9	protein_coding	TATA-box binding protein associated factor, RNA polymerase I, D
known_NIR_19766	chr9	15228824	15228970	-	15228889	15228970	A3SS	ENSMUST00000160946.8	known	0.00	0	9	0	9	n	0.13	2	13	2	13	y	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	ENSMUSG00000046111.18	Cep295	chr9	protein_coding	centrosomal protein 295
known_NIR_19767	chr9	15235009	15235445	-	15235006	15235445	A3SS	ENSMUST00000160946.8	known	0.55	6	5	6	5	y	0.40	4	6	4	6	y	0.32	6	13	6	13	y	0.00	0	4	0	4	n	0.30	3	7	3	7	y	0.44	4	5	4	5	n	0.36	4	7	4	7	y	0.50	7	7	7	7	y	0.00	0	3	0	3	n	0.67	6	3	6	3	n	0.36	4	7	4	7	y	0.31	4	9	4	9	y	ENSMUSG00000046111.18	Cep295	chr9	protein_coding	centrosomal protein 295
known_NIR_19768	chr9	15235587	15237371	-	15235587;15237042	15236803;15237371	ES	ENSMUST00000160946.8	known	0.57	2	1.5	2	1;2	n	0.70	8	3.5	8	3;4	y	0.47	7	8.0	7	9;7	y	0.50	1	1.0	1	1;1	n	0.44	6	7.5	6	3;12	y	0.00	0	2.5	0	0;5	n	0.14	1	6.0	1	3;9	n	0.00	0	3.5	0	4;3	n	0.33	3	6.0	3	5;7	y	0.67	6	3.0	6	3;3	y	0.00	0	1.0	0	0;2	n	0.14	1	6.0	1	6;6	n	ENSMUSG00000046111.18	Cep295	chr9	protein_coding	centrosomal protein 295
known_NIR_19769	chr9	15235587	15237371	-	15237042	15237371	3pMXE	ENSMUST00000162264.2	known	0.50	2	2	2	2	n	0.67	8	4	8	4	y	0.50	7	7	7	7	y	0.50	1	1	1	1	n	0.33	6	12	6	12	y	0.00	0	5	0	5	n	0.10	1	9	1	9	n	0.00	0	3	0	3	n	0.30	3	7	3	7	y	0.67	6	3	6	3	n	0.00	0	2	0	2	n	0.14	1	6	1	6	n	ENSMUSG00000046111.18	Cep295	chr9	protein_coding	centrosomal protein 295
known_NIR_19770	chr9	15239247	15242050	-	15239247;15241944	15241801;15242050	ES	ENSMUST00000160946.8	known	0.29	2	5.0	2	2;8	y	0.00	0	1.5	0	0;3	n	0.56	5	4.0	5	2;6	y	0.46	3	3.5	3	5;2	y	0.20	1	4.0	1	5;3	n	0.00	0	0.5	0	1;0	n	0.44	2	2.5	2	1;4	n	0.25	1	3.0	1	0;6	n	0.57	2	1.5	2	1;2	n	0.36	2	3.5	2	4;3	n	0.33	1	2.0	1	3;1	n	0.00	0	3.0	0	1;5	n	ENSMUSG00000046111.18	Cep295	chr9	protein_coding	centrosomal protein 295
known_NIR_19771	chr9	15416937	15436924	+	15404925	15436924	A5SS	ENSMUST00000215907.2	known	0.05	1	21	1	21	n	0.03	1	39	1	39	n	0.09	4	42	4	42	y	0.06	2	30	2	30	y	0.04	2	47	2	47	y	0.00	0	29	0	29	n	0.00	0	42	0	42	n	0.00	0	26	0	26	n	0.00	0	16	0	16	n	0.03	1	34	1	34	n	0.00	0	32	0	32	n	0.00	0	28	0	28	n	ENSMUSG00000058173.13	Smco4	chr9	protein_coding	single-pass membrane protein with coiled-coil domains 4
known_NIR_19772	chr9	15432175	15436924	+	15404925	15436924	A5SS	ENSMUST00000215907.2	known	0.00	0	21	0	21	n	0.05	2	39	2	39	y	0.05	2	42	2	42	y	0.00	0	30	0	30	n	0.00	0	47	0	47	n	0.00	0	29	0	29	n	0.00	0	42	0	42	n	0.00	0	26	0	26	n	0.00	0	16	0	16	n	0.00	0	34	0	34	n	0.00	0	32	0	32	n	0.00	0	28	0	28	n	ENSMUSG00000058173.13	Smco4	chr9	protein_coding	single-pass membrane protein with coiled-coil domains 4
known_NIR_19773	chr9	15648337	15649370	+	15648324	15649370	A5SS	ENSMUST00000115588.8	known	0.00	0	3	0	3	n	1.00	5	0	5	0	n	0.92	23	2	23	2	y	1.00	5	0	5	0	n	1.00	6	0	6	0	n	0.85	11	2	11	2	y	1.00	8	0	8	0	n	0.82	14	3	14	3	y	0.83	5	1	5	1	n	1.00	11	0	11	0	n	1.00	2	0	2	0	n	1.00	7	0	7	0	n	ENSMUSG00000043885.15	Slc36a4	chr9	protein_coding	solute carrier family 36 (proton/amino acid symporter), member 4
known_NIR_19774	chr9	18216647	18220046	+	18216647	18219518	3pMXE	ENSMUST00000215421.2	known	1.00	116	0	116	0	n	0.95	59	3	59	3	y	0.93	62	5	62	5	y	0.99	123	1	123	1	n	0.99	119	1	119	1	n	0.98	42	1	42	1	n	0.99	104	1	104	1	n	0.97	59	2	59	2	y	0.98	48	1	48	1	n	0.99	95	1	95	1	n	0.97	83	3	83	3	y	1.00	75	0	75	0	n	ENSMUSG00000001774.9	Chordc1	chr9	protein_coding	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1
known_NIR_19775	chr9	18216647;18219580	18219518;18220046	+	18216647	18220046	cassetteExon	ENSMUST00000001825.9	known	0.01	1.5	116	0;3	116	n	0.04	2.5	59	3;2	59	y	0.06	4.0	62	5;3	62	y	0.02	2.0	123	1;3	123	n	0.01	1.0	119	1;1	119	n	0.01	0.5	42	1;0	42	n	0.02	2.5	104	1;4	104	n	0.02	1.0	59	2;0	59	n	0.04	2.0	48	1;3	48	n	0.01	0.5	95	1;0	95	n	0.03	2.5	83	3;2	83	y	0.00	0.0	75	0;0	75	n	ENSMUSG00000001774.9	Chordc1	chr9	protein_coding	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1
known_NIR_19776	chr9	19537291	19540393	+	19533581	19540393	A5SS	ENSMUST00000213725.2	known	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.25	3	9	3	9	y	0.00	0	9	0	9	n	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	ENSMUSG00000057551.11	Zfp317	chr9	protein_coding	zinc finger protein 317
known_NIR_19777	chr9	20349733	20350818	-	20349956	20350818	A3SS	ENSMUST00000159569.9	known	0.14	2	12	2	12	y	0.14	1	6	1	6	n	0.27	3	8	3	8	y	0.00	0	18	0	18	n	0.06	1	16	1	16	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.29	4	10	4	10	y	ENSMUSG00000063108.16	Zfp26	chr9	protein_coding	zinc finger protein 26
known_NIR_19778	chr9	20382541	20382995	-	20382544	20382995	A3SS	ENSMUST00000168095.8	known	0.25	3	9	3	9	y	0.23	3	10	3	10	y	0.36	5	9	5	9	y	0.17	2	10	2	10	y	0.27	6	16	6	16	y	0.00	0	6	0	6	n	0.19	5	22	5	22	y	0.67	4	2	4	2	n	0.43	3	4	3	4	n	0.23	3	10	3	10	y	0.40	4	6	4	6	y	0.11	1	8	1	8	n	ENSMUSG00000059475.14	Zfp426	chr9	protein_coding	zinc finger protein 426
known_NIR_19779	chr9	20384404	20386203	-	20384404	20386207	A5SS	ENSMUST00000168095.8	known	0.87	13	2	13	2	y	1.00	6	0	6	0	n	0.93	13	1	13	1	n	1.00	9	0	9	0	n	1.00	18	0	18	0	n	1.00	10	0	10	0	n	1.00	14	0	14	0	n	1.00	20	0	20	0	n	1.00	6	0	6	0	n	0.90	9	1	9	1	n	1.00	6	0	6	0	n	0.94	15	1	15	1	n	ENSMUSG00000059475.14	Zfp426	chr9	protein_coding	zinc finger protein 426
known_NIR_19780	chr9	20384404	20387692	-	20384404	20386203	A5SS&ES	ENSMUST00000167457.8	known	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.24	4	13	4	13	y	0.10	1	9	1	9	n	0.18	4	18	4	18	y	0.00	0	10	0	10	n	0.12	2	14	2	14	y	0.00	0	20	0	20	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.25	2	6	2	6	n	0.00	0	15	0	15	n	ENSMUSG00000059475.14	Zfp426	chr9	protein_coding	zinc finger protein 426
known_NIR_19781	chr9	20384404	20387692	-	20384404;20386329	20386203;20387692	ES	ENSMUST00000115562.9	known	0.00	0	10.5	0	13;8	n	0.00	0	8.0	0	6;10	n	0.20	4	16.5	4	13;20	y	0.11	1	8.5	1	9;8	n	0.19	4	17.0	4	18;16	y	0.00	0	8.5	0	10;7	n	0.15	2	11.5	2	14;9	y	0.00	0	12.5	0	20;5	n	0.00	0	5.0	0	6;4	n	0.00	0	12.5	0	9;16	n	0.31	2	4.5	2	6;3	y	0.00	0	14.5	0	15;14	n	ENSMUSG00000059475.14	Zfp426	chr9	protein_coding	zinc finger protein 426
known_NIR_19782	chr9	20384404	20387692	-	20386329	20387692	3pMXE	ENSMUST00000169269.8	known	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.17	4	20	4	20	y	0.11	1	8	1	8	n	0.20	4	16	4	16	y	0.00	0	7	0	7	n	0.18	2	9	2	9	y	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	16	0	16	n	0.40	2	3	2	3	n	0.00	0	14	0	14	n	ENSMUSG00000059475.14	Zfp426	chr9	protein_coding	zinc finger protein 426
known_NIR_19783	chr9	20389550	20403682	-	20397733	20403682	A3SS&ES	ENSMUST00000169558.8	known	1.00	1	0	1	0	n	0.00	0	8	0	8	n	0.38	3	5	3	5	n	0.30	3	7	3	7	y	0.41	7	10	7	10	y	0.00	0	9	0	9	n	0.50	2	2	2	2	n	0.33	2	4	2	4	n	0.00	0	8	0	8	n	0.20	2	8	2	8	y	0.00	0	3	0	3	n	0.33	1	2	1	2	n	ENSMUSG00000059475.14	Zfp426	chr9	protein_coding	zinc finger protein 426
known_NIR_19784	chr9	20389550;20397733	20397626;20403682	-	20389550	20403682	cassetteExon	ENSMUST00000115562.9	known	0.33	0.5	1	1;0	1	n	1.00	5.5	0	3;8	0	n	0.60	4.5	3	4;5	3	y	0.62	5.0	3	3;7	3	y	0.63	12.0	7	14;10	7	y	1.00	9.5	0	10;9	0	n	0.71	5.0	2	8;2	2	y	0.60	3.0	2	2;4	2	n	1.00	8.0	0	8;8	0	n	0.79	7.5	2	7;8	2	y	1.00	2.5	0	2;3	0	n	0.83	5.0	1	8;2	1	n	ENSMUSG00000059475.14	Zfp426	chr9	protein_coding	zinc finger protein 426
known_NIR_19785	chr9	20417361	20419315	-	20417361;20418178	20418024;20419315	ES	ENSMUST00000174462.8	known	0.00	0	9.5	0	8;11	n	0.00	0	5.0	0	7;3	n	0.00	0	10.0	0	12;8	n	0.12	2	14.5	2	15;14	y	0.00	0	15.5	0	15;16	n	0.00	0	8.5	0	9;8	n	0.22	3	10.5	3	12;9	y	0.07	1	13.0	1	16;10	n	0.00	0	6.0	0	9;3	n	0.15	2	11.0	2	6;16	y	0.00	0	7.5	0	5;10	n	0.17	2	10.0	2	11;9	y	ENSMUSG00000060510.15	Zfp266	chr9	protein_coding	zinc finger protein 266
known_NIR_19786	chr9	20417361	20419315	-	20418178	20419315	3pMXE	ENSMUST00000217488.2	known	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.12	2	14	2	14	y	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.25	3	9	3	9	y	0.09	1	10	1	10	n	0.00	0	3	0	3	n	0.11	2	16	2	16	y	0.00	0	10	0	10	n	0.18	2	9	2	9	y	ENSMUSG00000060510.15	Zfp266	chr9	protein_coding	zinc finger protein 266
known_NIR_19787	chr9	20419481	20432640	-	20419481	20432316	A5SS&ES	ENSMUST00000068296.8	known	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.20	3	12	3	12	y	0.11	1	8	1	8	n	0.00	0	8	0	8	n	0.50	4	4	4	4	n	0.23	3	10	3	10	y	0.08	1	11	1	11	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.14	1	6	1	6	n	ENSMUSG00000060510.15	Zfp266	chr9	protein_coding	zinc finger protein 266
known_NIR_19788	chr9	20419481	20432640	-	20419481;20432415	20432316;20432640	ES	ENSMUST00000174462.8	known	0.00	0	3.0	0	4;2	n	0.00	0	4.0	0	7;1	n	0.29	3	7.5	3	12;3	y	0.15	1	5.5	1	8;3	n	0.00	0	6.0	0	8;4	n	0.67	4	2.0	4	4;0	n	0.33	3	6.0	3	10;2	y	0.13	1	6.5	1	11;2	n	0.00	0	4.0	0	6;2	n	0.00	0	5.0	0	5;5	n	0.00	0	3.5	0	6;1	n	0.14	1	6.0	1	6;6	n	ENSMUSG00000060510.15	Zfp266	chr9	protein_coding	zinc finger protein 266
known_NIR_19789	chr9	20499931;20500854	20500753;20502109	+	20499931	20502109	cassetteExon	ENSMUST00000115557.10	known	0.33	1.0	2	1;1	2	n	0.30	3.0	7	2;4	7	y	0.27	1.5	4	2;1	4	n	0.56	2.5	2	2;3	2	n	0.17	1.0	5	0;2	5	n	0.14	0.5	3	1;0	3	n	0.17	1.0	5	2;0	5	n	0.43	1.5	2	1;2	2	n	0.50	2.0	2	2;2	2	n	0.38	5.0	8	5;5	8	y	0.60	1.5	1	1;2	1	n	0.09	0.5	5	1;0	5	n	ENSMUSG00000058192.17	Zfp846	chr9	protein_coding	zinc finger protein 846
known_NIR_19790	chr9	20550494	20553320	-	20529706	20553320	A3SS	ENSMUST00000155301.8	known	1.00	5	0	5	0	n	1.00	9	0	9	0	n	0.60	3	2	3	2	n	1.00	12	0	12	0	n	1.00	11	0	11	0	n	1.00	1	0	1	0	n	0.86	12	2	12	2	y	1.00	3	0	3	0	n	1.00	5	0	5	0	n	1.00	6	0	6	0	n	1.00	12	0	12	0	n	1.00	6	0	6	0	n	ENSMUSG00000066892.15	Fbxl12	chr9	protein_coding	F-box and leucine-rich repeat protein 12
known_NIR_19791	chr9	20553392	20555491	-	20553392	20553500	5pMXE	ENSMUST00000155301.8	known	0.25	2	6	2	6	n	0.78	7	2	7	2	n	0.33	2	4	2	4	n	0.67	10	5	10	5	y	0.39	7	11	7	11	y	0.56	5	4	5	4	n	0.77	10	3	10	3	y	0.33	2	4	2	4	n	0.23	3	10	3	10	y	0.36	4	7	4	7	y	0.11	2	16	2	16	y	0.14	1	6	1	6	n	ENSMUSG00000066892.15	Fbxl12	chr9	protein_coding	F-box and leucine-rich repeat protein 12
known_NIR_19792	chr9	20556272	20556489	+	20556189	20556489	A5SS	ENSMUST00000154429.9	known	0.02	11	715	11	715	y	0.02	14	742	14	742	y	0.02	16	796	16	796	y	0.02	13	709	13	709	y	0.02	17	929	17	929	y	0.03	14	483	14	483	y	0.02	20	966	20	966	y	0.02	9	512	9	512	y	0.02	16	719	16	719	y	0.02	21	962	21	962	y	0.02	17	751	17	751	y	0.02	13	758	13	758	y	ENSMUSG00000084786.10	Ubl5	chr9	protein_coding	ubiquitin-like 5
known_NIR_19793	chr9	20556785	20556898	+	20556785	20556918	A3SS	ENSMUST00000154429.9	known	0.00	2	605	2	605	y	0.00	1	655	1	655	n	0.01	4	586	4	586	y	0.01	3	500	3	500	y	0.01	5	725	5	725	y	0.01	3	331	3	331	y	0.00	4	823	4	823	y	0.00	0	364	0	364	n	0.01	3	487	3	487	y	0.00	3	750	3	750	y	0.00	1	681	1	681	n	0.00	0	657	0	657	n	ENSMUSG00000084786.10	Ubl5	chr9	protein_coding	ubiquitin-like 5
known_NIR_19794	chr9	20556789	20556918	+	20556785	20556918	A5SS	ENSMUST00000154429.9	known	0.00	1	605	1	605	n	0.00	2	655	2	655	y	0.00	1	586	1	586	n	0.00	0	500	0	500	n	0.00	2	725	2	725	y	0.00	0	331	0	331	n	0.00	0	823	0	823	n	0.00	0	364	0	364	n	0.00	1	487	1	487	n	0.00	0	750	0	750	n	0.00	0	681	0	681	n	0.00	0	657	0	657	n	ENSMUSG00000084786.10	Ubl5	chr9	protein_coding	ubiquitin-like 5
known_NIR_19795	chr9	20780949	20781058	+	20780949	20782493	A3SS	ENSMUST00000043911.8	known	0.31	24	54	24	54	y	0.20	14	56	14	56	y	0.36	54	98	54	98	y	0.32	26	56	26	56	y	0.25	44	129	44	129	y	0.28	13	34	13	34	y	0.20	23	90	23	90	y	0.35	33	60	33	60	y	0.29	23	57	23	57	y	0.21	21	80	21	80	y	0.41	36	52	36	52	y	0.36	44	77	44	77	y	ENSMUSG00000038884.15	Shfl	chr9	protein_coding	shiftless antiviral inhibitor of ribosomal frameshifting
known_NIR_19796	chr9	20918240	20918560	+	20918240	20918730	A3SS	ENSMUST00000003386.7	known	0.01	1	108	1	108	n	0.00	0	117	0	117	n	0.01	1	106	1	106	n	0.01	1	105	1	105	n	0.00	0	137	0	137	n	0.00	0	63	0	63	n	0.00	0	135	0	135	n	0.01	1	88	1	88	n	0.00	0	101	0	101	n	0.00	0	135	0	135	n	0.02	3	125	3	125	y	0.01	1	105	1	105	n	ENSMUSG00000003299.11	Mrpl4	chr9	protein_coding	mitochondrial ribosomal protein L4
known_NIR_19797	chr9	20918240	20918624	+	20918240	20918660	A3SS	ENSMUST00000216824.2	known	0.25	2	6	2	6	n	0.00	0	3	0	3	n	0.60	3	2	3	2	n	0.00	0	4	0	4	n	0.10	1	9	1	9	n	0.00	0	8	0	8	n	0.30	3	7	3	7	y	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.00	0	5	0	5	n	0.38	3	5	3	5	n	ENSMUSG00000003299.11	Mrpl4	chr9	protein_coding	mitochondrial ribosomal protein L4
known_NIR_19798	chr9	20918240	20918624	+	20918240	20918730	A3SS	ENSMUST00000003386.7	known	0.02	2	108	2	108	y	0.00	0	117	0	117	n	0.03	3	106	3	106	y	0.00	0	105	0	105	n	0.01	1	137	1	137	n	0.00	0	63	0	63	n	0.02	3	135	3	135	y	0.00	0	88	0	88	n	0.00	0	101	0	101	n	0.01	1	135	1	135	n	0.00	0	125	0	125	n	0.03	3	105	3	105	y	ENSMUSG00000003299.11	Mrpl4	chr9	protein_coding	mitochondrial ribosomal protein L4
known_NIR_19799	chr9	20918240	20918660	+	20918240	20918730	A3SS	ENSMUST00000003386.7	known	0.05	6	108	6	108	y	0.03	3	117	3	117	y	0.02	2	106	2	106	y	0.04	4	105	4	105	y	0.06	9	137	9	137	y	0.11	8	63	8	63	y	0.05	7	135	7	135	y	0.10	10	88	10	88	y	0.04	4	101	4	101	y	0.05	7	135	7	135	y	0.04	5	125	5	125	y	0.05	5	105	5	105	y	ENSMUSG00000003299.11	Mrpl4	chr9	protein_coding	mitochondrial ribosomal protein L4
known_NIR_19800	chr9	20984614	20984685	-	20984614	20986587	A5SS	ENSMUST00000217359.2	known	1.00	88	0	88	0	n	0.96	71	3	71	3	y	0.97	65	2	65	2	y	1.00	62	0	62	0	n	0.99	90	1	90	1	n	1.00	43	0	43	0	n	0.99	71	1	71	1	n	0.97	38	1	38	1	n	1.00	48	0	48	0	n	1.00	71	0	71	0	n	1.00	70	0	70	0	n	1.00	64	0	64	0	n	ENSMUSG00000111497.2	Gm38431	chr9	protein_coding	predicted gene, 38431
known_NIR_19801	chr9	20991464	20992001	-	20991467	20992001	A3SS	ENSMUST00000217359.2	known	0.07	2	27	2	27	y	0.09	2	21	2	21	y	0.07	3	38	3	38	y	0.29	6	15	6	15	y	0.07	3	37	3	37	y	0.08	1	12	1	12	n	0.00	0	38	0	38	n	0.11	2	17	2	17	y	0.05	1	19	1	19	n	0.05	1	20	1	20	n	0.07	2	25	2	25	y	0.10	3	28	3	28	y	ENSMUSG00000111497.2	Gm38431	chr9	protein_coding	predicted gene, 38431
known_NIR_19802	chr9	21025616;21026575	21026488;21026668	-	21025616	21026668	cassetteExon	ENSMUST00000213717.2	known	1.00	21.0	0	19;23	0	n	1.00	15.5	0	16;15	0	n	0.91	30.5	3	27;34	3	y	1.00	24.5	0	32;17	0	n	1.00	27.5	0	30;25	0	n	1.00	17.5	0	15;20	0	n	1.00	25.0	0	24;26	0	n	1.00	22.0	0	22;22	0	n	1.00	16.0	0	19;13	0	n	1.00	18.0	0	22;14	0	n	1.00	27.0	0	25;29	0	n	1.00	20.5	0	16;25	0	n	ENSMUSG00000032175.12	Tyk2	chr9	protein_coding	tyrosine kinase 2
known_NIR_19803	chr9	21053973	21054243	-	21053826	21054243	A3SS	ENSMUST00000019615.11	known	0.03	8	290	8	290	y	0.02	6	250	6	250	y	0.03	11	305	11	305	y	0.03	10	342	10	342	y	0.02	8	383	8	383	y	0.08	11	129	11	129	y	0.03	12	354	12	354	y	0.02	3	181	3	181	y	0.04	10	235	10	235	y	0.02	7	394	7	394	y	0.04	15	319	15	319	y	0.02	9	356	9	356	y	ENSMUSG00000019471.11	Cdc37	chr9	protein_coding	cell division cycle 37
known_NIR_19804	chr9	21149052	21150089	-	21149052	21150372	A5SS	ENSMUST00000194542.6	known	0.46	12	14	12	14	y	0.45	9	11	9	11	y	0.40	19	28	19	28	y	0.24	10	31	10	31	y	0.25	12	36	12	36	y	0.67	12	6	12	6	y	0.46	17	20	17	20	y	0.33	8	16	8	16	y	0.38	9	15	9	15	y	0.35	16	30	16	30	y	0.35	7	13	7	13	y	0.38	16	26	16	26	y	ENSMUSG00000003308.16	Keap1	chr9	protein_coding	kelch-like ECH-associated protein 1
known_NIR_19805	chr9	21149052	21150204	-	21149052	21150089	A5SS	ENSMUST00000049567.10	known	0.20	3	12	3	12	y	0.36	5	9	5	9	y	0.34	10	19	10	19	y	0.17	2	10	2	10	y	0.25	4	12	4	12	y	0.37	7	12	7	12	y	0.00	0	17	0	17	n	0.20	2	8	2	8	y	0.18	2	9	2	9	y	0.06	1	16	1	16	n	0.42	5	7	5	7	y	0.16	3	16	3	16	y	ENSMUSG00000003308.16	Keap1	chr9	protein_coding	kelch-like ECH-associated protein 1
known_NIR_19806	chr9	21149052	21150204	-	21149052	21150372	A5SS	ENSMUST00000194542.6	known	0.18	3	14	3	14	y	0.31	5	11	5	11	y	0.26	10	28	10	28	y	0.06	2	31	2	31	y	0.10	4	36	4	36	y	0.54	7	6	7	6	y	0.00	0	20	0	20	n	0.11	2	16	2	16	y	0.12	2	15	2	15	y	0.03	1	30	1	30	n	0.28	5	13	5	13	y	0.10	3	26	3	26	y	ENSMUSG00000003308.16	Keap1	chr9	protein_coding	kelch-like ECH-associated protein 1
known_NIR_19807	chr9	21177013	21177889	+	21177013	21178035	A3SS	ENSMUST00000065005.5	known	0.03	2	74	2	74	y	0.00	0	94	0	94	n	0.01	1	86	1	86	n	0.04	3	79	3	79	y	0.02	3	120	3	120	y	0.00	0	37	0	37	n	0.00	0	119	0	119	n	0.00	0	59	0	59	n	0.03	2	57	2	57	y	0.03	3	117	3	117	y	0.02	2	86	2	86	y	0.06	5	72	5	72	y	ENSMUSG00000002820.7	Atg4d	chr9	protein_coding	autophagy related 4D, cysteine peptidase
known_NIR_19808	chr9	21263847;21264424	21264297;21264978	+	21263847	21264978	cassetteExon	ENSMUST00000217461.2	known	0.07	1.0	13	2;0	13	n	0.00	0.0	14	0;0	14	n	0.04	1.0	22	2;0	22	n	0.12	1.0	7	2;0	7	n	0.03	0.5	19	0;1	19	n	0.00	0.0	14	0;0	14	n	0.35	8.5	16	12;5	16	y	0.09	0.5	5	1;0	5	n	0.00	0.0	6	0;0	6	n	0.00	0.0	5	0;0	5	n	0.00	0.0	11	0;0	11	n	0.00	0.0	10	0;0	10	n	ENSMUSG00000057193.9	Slc44a2	chr9	protein_coding	solute carrier family 44, member 2
known_NIR_19809	chr9	21263847;21264468	21264297;21264978	+	21263847	21264978	cassetteExon	ENSMUST00000217461.2	known	0.10	1.5	13	2;1	13	n	0.00	0.0	14	0;0	14	n	0.06	1.5	22	2;1	22	n	0.18	1.5	7	2;1	7	n	0.00	0.0	19	0;0	19	n	0.03	0.5	14	0;1	14	n	0.30	7.0	16	12;2	16	y	0.17	1.0	5	1;1	5	n	0.00	0.0	6	0;0	6	n	0.00	0.0	5	0;0	5	n	0.00	0.0	11	0;0	11	n	0.00	0.0	10	0;0	10	n	ENSMUSG00000057193.9	Slc44a2	chr9	protein_coding	solute carrier family 44, member 2
known_NIR_19810	chr9	21299093	21299805	+	21299093	21299408	A3SS&ES	ENSMUST00000213518.2	known	-	-	-	-	-	-	0.00	0	5	0	5	n	0.30	3	7	3	7	y	0.50	4	4	4	4	n	0.08	1	11	1	11	n	0.27	3	8	3	8	y	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.10	1	9	1	9	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	17	0	17	n	ENSMUSG00000032178.15	Ilf3	chr9	protein_coding	interleukin enhancer binding factor 3
known_NIR_19811	chr9	21299093	21299805	+	21299093	21299820	A3SS	ENSMUST00000067646.12	known	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.33	3	6	3	6	n	0.33	4	8	4	8	y	0.11	1	8	1	8	n	0.75	3	1	3	1	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.11	1	8	1	8	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	ENSMUSG00000032178.15	Ilf3	chr9	protein_coding	interleukin enhancer binding factor 3
known_NIR_19812	chr9	21299093;21299446	21299408;21299820	+	21299093	21299820	cassetteExon	ENSMUST00000067646.12	known	0.24	2.5	8	0;5	8	n	0.85	5.5	1	5;6	1	n	0.61	9.5	6	7;12	6	y	0.41	5.5	8	4;7	8	y	0.62	13.0	8	11;15	8	y	0.90	9.0	1	8;10	1	n	0.53	8.0	7	6;10	7	y	0.64	7.0	4	8;6	4	y	0.52	8.5	8	9;8	8	y	0.47	8.0	9	7;9	9	y	0.52	7.5	7	6;9	7	y	0.54	15.5	13	17;14	13	y	ENSMUSG00000032178.15	Ilf3	chr9	protein_coding	interleukin enhancer binding factor 3
known_NIR_19813	chr9	21311309	21314432	+	21311309	21311748	3pMXE	ENSMUST00000214217.2	known	0.54	7	6	7	6	y	0.61	11	7	11	7	y	0.52	13	12	13	12	y	0.93	14	1	14	1	n	0.65	11	6	11	6	y	0.38	3	5	3	5	n	0.62	15	9	15	9	y	0.80	4	1	4	1	n	0.78	7	2	7	2	n	0.62	10	6	10	6	y	0.75	9	3	9	3	y	0.68	17	8	17	8	y	ENSMUSG00000032178.15	Ilf3	chr9	protein_coding	interleukin enhancer binding factor 3
known_NIR_19814	chr9	21315478	21315992	+	21315487	21315992	A5SS	ENSMUST00000067646.12	known	0.03	1	33	1	33	n	0.05	1	21	1	21	n	0.00	0	32	0	32	n	0.00	0	24	0	24	n	0.00	0	56	0	56	n	0.05	1	18	1	18	n	0.00	0	37	0	37	n	0.11	2	16	2	16	y	0.00	0	24	0	24	n	0.07	3	40	3	40	y	0.03	1	32	1	32	n	0.00	0	50	0	50	n	ENSMUSG00000032178.15	Ilf3	chr9	protein_coding	interleukin enhancer binding factor 3
known_NIR_19815	chr9	21323241	21323529	+	21323393	21323529	A5SS	ENSMUST00000002902.8	known	0.40	2	3	2	3	n	0.00	0	14	0	14	n	0.22	6	21	6	21	y	0.20	1	4	1	4	n	0.14	1	6	1	6	n	0.15	2	11	2	11	y	0.00	0	5	0	5	n	0.14	1	6	1	6	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.20	1	4	1	4	n	0.00	0	7	0	7	n	ENSMUSG00000002825.9	Qtrt1	chr9	protein_coding	queuine tRNA-ribosyltransferase catalytic subunit 1
known_NIR_19816	chr9	21328693	21329580	+	21328683	21329580	A5SS	ENSMUST00000002902.8	known	0.08	1	11	1	11	n	0.17	1	5	1	5	n	0.13	2	13	2	13	y	0.00	0	7	0	7	n	0.13	2	13	2	13	y	0.00	0	5	0	5	n	0.21	4	15	4	15	y	0.09	1	10	1	10	n	0.09	1	10	1	10	n	0.00	0	7	0	7	n	0.08	1	12	1	12	n	0.22	2	7	2	7	n	ENSMUSG00000002825.9	Qtrt1	chr9	protein_coding	queuine tRNA-ribosyltransferase catalytic subunit 1
known_NIR_19817	chr9	21329416	21329580	+	21328683	21329580	A5SS	ENSMUST00000002902.8	known	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.13	2	13	2	13	y	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.29	2	5	2	5	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	ENSMUSG00000002825.9	Qtrt1	chr9	protein_coding	queuine tRNA-ribosyltransferase catalytic subunit 1
known_NIR_19818	chr9	21389644;21391841	21391703;21392629	+	21389644;21390333	21390195;21392629	MXE	ENSMUST00000165766.9	known	0.36	24.0	43.0	19;29	24;62	y	0.40	22.5	34.0	15;30	27;41	y	0.54	59.0	50.5	40;78	41;60	y	0.44	32.0	41.0	24;40	29;53	y	0.34	35.5	69.0	34;37	58;80	y	0.54	28.5	24.5	23;34	18;31	y	0.30	24.0	56.0	25;23	44;68	y	0.34	16.5	31.5	9;24	26;37	y	0.28	14.0	36.0	10;18	23;49	y	0.39	29.0	45.0	20;38	31;59	y	0.44	29.5	37.5	21;38	32;43	y	0.43	35.5	47.5	27;44	33;62	y	ENSMUSG00000033335.18	Dnm2	chr9	protein_coding	dynamin 2
known_NIR_19819	chr9	21390333	21392629	+	21391841	21392629	5pMXE	ENSMUST00000172763.8	known	0.68	62	29	62	29	y	0.58	41	30	41	30	y	0.43	60	78	60	78	y	0.57	53	40	53	40	y	0.68	80	37	80	37	y	0.48	31	34	31	34	y	0.75	68	23	68	23	y	0.61	37	24	37	24	y	0.73	49	18	49	18	y	0.61	59	38	59	38	y	0.53	43	38	43	38	y	0.58	62	44	62	44	y	ENSMUSG00000033335.18	Dnm2	chr9	protein_coding	dynamin 2
known_NIR_19820	chr9	21401090	21405800	+	21401090;21401965	21401954;21405800	ES	ENSMUST00000165766.9	known	0.36	25	44.0	25	42;46	y	0.26	18	51.0	18	50;52	y	0.27	20	55.0	20	51;59	y	0.32	26	55.5	26	54;57	y	0.27	27	72.0	27	67;77	y	0.26	12	35.0	12	32;38	y	0.29	22	53.0	22	47;59	y	0.31	12	27.0	12	22;32	y	0.35	26	49.0	26	47;51	y	0.39	32	50.0	32	46;54	y	0.32	23	49.5	23	43;56	y	0.29	24	59.5	24	57;62	y	ENSMUSG00000033335.18	Dnm2	chr9	protein_coding	dynamin 2
known_NIR_19821	chr9	21417011	21417629	+	21417011	21417632	A3SS	ENSMUST00000173397.8	known	0.54	40	34	40	34	y	0.63	66	38	66	38	y	0.59	62	43	62	43	y	0.64	39	22	39	22	y	0.60	57	38	57	38	y	0.52	27	25	27	25	y	0.53	52	47	52	47	y	0.65	33	18	33	18	y	0.59	39	27	39	27	y	0.51	51	49	51	49	y	0.54	41	35	41	35	y	0.65	63	34	63	34	y	ENSMUSG00000033335.18	Dnm2	chr9	protein_coding	dynamin 2
known_NIR_19822	chr9	21417011	21417629	+	21417011	21418719	A3SS	ENSMUST00000165766.9	known	0.83	40	8	40	8	y	0.75	66	22	66	22	y	0.65	62	33	62	33	y	0.66	39	20	39	20	y	0.76	57	18	57	18	y	0.77	27	8	27	8	y	0.68	52	25	52	25	y	0.87	33	5	33	5	y	0.70	39	17	39	17	y	0.71	51	21	51	21	y	0.61	41	26	41	26	y	0.81	63	15	63	15	y	ENSMUSG00000033335.18	Dnm2	chr9	protein_coding	dynamin 2
known_NIR_19823	chr9	21417011	21417632	+	21417011	21418719	A3SS	ENSMUST00000165766.9	known	0.81	34	8	34	8	y	0.63	38	22	38	22	y	0.57	43	33	43	33	y	0.52	22	20	22	20	y	0.68	38	18	38	18	y	0.76	25	8	25	8	y	0.65	47	25	47	25	y	0.78	18	5	18	5	y	0.61	27	17	27	17	y	0.70	49	21	49	21	y	0.57	35	26	35	26	y	0.69	34	15	34	15	y	ENSMUSG00000033335.18	Dnm2	chr9	protein_coding	dynamin 2
known_NIR_19824	chr9	21420410	21420585	-	21420410	21420550	A5SS	ENSMUST00000034698.9	known	0.07	5	67	5	67	y	0.04	2	50	2	50	y	0.00	0	41	0	41	n	0.02	1	62	1	62	n	0.00	0	105	0	105	n	0.00	0	22	0	22	n	0.09	9	93	9	93	y	0.00	0	44	0	44	n	0.02	1	54	1	54	n	0.06	4	58	4	58	y	0.03	2	78	2	78	y	0.00	0	103	0	103	n	ENSMUSG00000032180.12	Tmed1	chr9	protein_coding	transmembrane p24 trafficking protein 1
known_NIR_19825	chr9	21440379	21450383	+	21440379;21447293	21447204;21450383	ES	ENSMUST00000086361.12	known	0.07	1	12.5	1	10;15	n	0.13	2	13.0	2	9;17	y	0.09	1	10.5	1	10;11	n	0.18	2	9.0	2	7;11	y	0.20	4	16.5	4	19;14	y	0.09	1	10.0	1	10;10	n	0.15	3	16.5	3	18;15	y	0.15	1	5.5	1	9;2	n	0.13	1	6.5	1	9;4	n	0.17	2	10.0	2	8;12	y	0.27	2	5.5	2	5;6	y	0.00	0	8.5	0	9;8	n	ENSMUSG00000057191.14	AB124611	chr9	protein_coding	cDNA sequence AB124611
known_NIR_19826	chr9	21498881	21499345	+	21498881	21499147	A3SS	ENSMUST00000115394.8	known	0.12	6	42	6	42	y	0.19	4	17	4	17	y	0.23	7	23	7	23	y	0.33	13	27	13	27	y	0.36	17	30	17	30	y	0.06	2	30	2	30	y	0.19	9	38	9	38	y	0.23	5	17	5	17	y	0.21	7	27	7	27	y	0.10	4	37	4	37	y	0.12	5	35	5	35	y	0.28	13	33	13	33	y	ENSMUSG00000032185.16	Carm1	chr9	protein_coding	coactivator-associated arginine methyltransferase 1
known_NIR_19827	chr9	21498881	21499345	+	21498881;21499215	21499147;21499345	ES	ENSMUST00000034703.15	known	0.14	6	37.0	6	42;32	y	0.17	4	19.0	4	17;21	y	0.23	7	23.5	7	23;24	y	0.32	13	28.0	13	27;29	y	0.32	17	36.0	17	30;42	y	0.07	2	28.5	2	30;27	y	0.20	9	37.0	9	38;36	y	0.23	5	16.5	5	17;16	y	0.21	7	27.0	7	27;27	y	0.10	4	38.0	4	37;39	y	0.13	5	34.5	5	35;34	y	0.30	13	30.0	13	33;27	y	ENSMUSG00000032185.16	Carm1	chr9	protein_coding	coactivator-associated arginine methyltransferase 1
known_NIR_19828	chr9	21498881	21499345	+	21499215	21499345	A5SS	ENSMUST00000130100.2	known	0.16	6	32	6	32	y	0.16	4	21	4	21	y	0.23	7	24	7	24	y	0.31	13	29	13	29	y	0.29	17	42	17	42	y	0.07	2	27	2	27	y	0.20	9	36	9	36	y	0.24	5	16	5	16	y	0.21	7	27	7	27	y	0.09	4	39	4	39	y	0.13	5	34	5	34	y	0.33	13	27	13	27	y	ENSMUSG00000032185.16	Carm1	chr9	protein_coding	coactivator-associated arginine methyltransferase 1
known_NIR_19829	chr9	21498881	21503392	+	21498881	21499147	3pMXE	ENSMUST00000115394.8	known	0.00	0	42	0	42	n	0.00	0	17	0	17	n	0.00	0	23	0	23	n	0.00	0	27	0	27	n	0.00	0	30	0	30	n	0.00	0	30	0	30	n	0.00	0	38	0	38	n	0.11	2	17	2	17	y	0.00	0	27	0	27	n	0.00	0	37	0	37	n	0.00	0	35	0	35	n	0.03	1	33	1	33	n	ENSMUSG00000032185.16	Carm1	chr9	protein_coding	coactivator-associated arginine methyltransferase 1
known_NIR_19830	chr9	21503514	21504023	-	21503514	21503824	A5SS&ES	ENSMUST00000078572.9	known	0.03	2	68	2	68	y	0.12	7	52	7	52	y	0.03	5	140	5	140	y	0.09	5	52	5	52	y	0.04	4	98	4	98	y	0.09	7	74	7	74	y	0.02	2	86	2	86	y	0.07	6	83	6	83	y	0.12	6	45	6	45	y	0.03	2	77	2	77	y	0.02	1	63	1	63	n	0.06	4	63	4	63	y	ENSMUSG00000032182.16	Yipf2	chr9	protein_coding	Yip1 domain family, member 2
known_NIR_19831	chr9	21503514	21504023	-	21503514;21503884	21503824;21504023	ES	ENSMUST00000180365.9	known	0.05	2	38.5	2	68;9	y	0.18	7	31.0	7	52;10	y	0.06	5	76.5	5	140;13	y	0.13	5	33.5	5	52;15	y	0.06	4	62.0	4	98;26	y	0.15	7	41.0	7	74;8	y	0.04	2	48.0	2	86;10	y	0.11	6	48.0	6	83;13	y	0.19	6	25.0	6	45;5	y	0.04	2	46.5	2	77;16	y	0.03	1	38.0	1	63;13	n	0.09	4	40.0	4	63;17	y	ENSMUSG00000032182.16	Yipf2	chr9	protein_coding	Yip1 domain family, member 2
known_NIR_19832	chr9	21503884	21504023	-	21503884	21504033	A5SS	ENSMUST00000078572.9	known	0.53	9	8	9	8	y	0.67	10	5	10	5	y	0.42	13	18	13	18	y	0.68	15	7	15	7	y	0.58	26	19	26	19	y	0.40	8	12	8	12	y	0.43	10	13	10	13	y	0.48	13	14	13	14	y	0.56	5	4	5	4	n	0.57	16	12	16	12	y	0.50	13	13	13	13	y	0.65	17	9	17	9	y	ENSMUSG00000032182.16	Yipf2	chr9	protein_coding	Yip1 domain family, member 2
known_NIR_19833	chr9	21588973;21589347	21589249;21589612	+	21588973	21589612	cassetteExon	ENSMUST00000034707.15	known	0.02	1.5	66	3;0	66	n	0.00	0.0	87	0;0	87	n	0.03	2.0	73	0;4	73	n	0.03	2.5	70	4;1	70	n	0.03	3.0	85	3;3	85	y	0.03	1.0	34	2;0	34	n	0.03	3.0	88	5;1	88	n	0.05	1.5	31	0;3	31	n	0.09	3.5	35	4;3	35	y	0.05	4.5	78	6;3	78	y	0.04	3.0	67	3;3	67	y	0.05	4.0	71	6;2	71	y	ENSMUSG00000032187.17	Smarca4	chr9	protein_coding	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
known_NIR_19834	chr9	21590443	21597309	+	21590443	21597318	A3SS	ENSMUST00000034707.15	known	0.41	37	53	37	53	y	0.52	34	32	34	32	y	0.39	27	42	27	42	y	0.48	45	49	45	49	y	0.32	31	65	31	65	y	0.44	19	24	19	24	y	0.43	38	51	38	51	y	0.37	13	22	13	22	y	0.44	30	38	30	38	y	0.43	41	55	41	55	y	0.32	29	63	29	63	y	0.48	41	44	41	44	y	ENSMUSG00000032187.17	Smarca4	chr9	protein_coding	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
known_NIR_19835	chr9	21597571	21611099	+	21597571	21611096	A3SS	ENSMUST00000034707.15	known	0.35	34	64	34	64	y	0.25	20	61	20	61	y	0.21	14	54	14	54	y	0.42	36	50	36	50	y	0.28	31	81	31	81	y	0.35	12	22	12	22	y	0.29	28	70	28	70	y	0.33	17	34	17	34	y	0.23	19	64	19	64	y	0.29	28	70	28	70	y	0.33	27	54	27	54	y	0.33	28	56	28	56	y	ENSMUSG00000032187.17	Smarca4	chr9	protein_coding	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
known_NIR_19836	chr9	21655359	21657028	+	21655359;21655681	21655526;21657028	ES	ENSMUST00000034713.9	known	0.00	0	211.0	0	181;241	n	0.00	0	139.5	0	121;158	n	0.03	5	179.5	5	164;195	y	0.00	0	217.0	0	195;239	n	0.00	0	346.5	0	313;380	n	0.00	0	129.0	0	115;143	n	0.01	2	235.0	2	231;239	y	0.00	0	145.0	0	144;146	n	0.00	0	203.0	0	181;225	n	0.00	0	273.5	0	234;313	n	0.00	0	239.5	0	214;265	n	0.00	0	262.0	0	248;276	n	ENSMUSG00000032193.10	Ldlr	chr9	protein_coding	low density lipoprotein receptor
known_NIR_19837	chr9	21667591	21668586	-	21667591;21668489	21668413;21668586	ES	ENSMUST00000098942.6	known	0.00	0	24.5	0	22;27	n	0.00	0	24.0	0	20;28	n	0.80	2	0.5	2	0;1	n	0.09	2	20.5	2	12;29	y	0.10	3	26.5	3	24;29	y	0.00	0	1.0	0	1;1	n	0.00	0	24.5	0	22;27	n	0.00	0	4.0	0	4;4	n	0.09	3	30.0	3	39;21	y	0.07	3	40.0	3	38;42	y	0.09	4	39.0	4	40;38	y	0.00	0	51.0	0	50;52	n	ENSMUSG00000074476.7	Spc24	chr9	protein_coding	SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)
known_NIR_19838	chr9	21667591	21668586	-	21668489	21668586	3pMXE	ENSMUST00000214149.2	known	0.00	0	27	0	27	n	0.00	0	28	0	28	n	0.67	2	1	2	1	n	0.06	2	29	2	29	y	0.09	3	29	3	29	y	0.00	0	1	0	1	n	0.00	0	27	0	27	n	0.00	0	4	0	4	n	0.12	3	21	3	21	y	0.07	3	42	3	42	y	0.10	4	38	4	38	y	0.00	0	52	0	52	n	ENSMUSG00000074476.7	Spc24	chr9	protein_coding	SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)
known_NIR_19839	chr9	21669125	21671548	-	21669125	21671415	A5SS	ENSMUST00000098942.6	known	0.04	1	25	1	25	n	0.00	0	21	0	21	n	0.00	0	3	0	3	n	0.00	0	25	0	25	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	25	0	25	n	0.12	1	7	1	7	n	0.07	2	26	2	26	y	0.00	0	45	0	45	n	0.04	2	48	2	48	y	0.03	1	37	1	37	n	ENSMUSG00000074476.7	Spc24	chr9	protein_coding	SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)
known_NIR_19840	chr9	21714199	21715218	-	21714199	21714289	A5SS&ES	ENSMUST00000217336.2	known	0.15	4	23	4	23	y	0.00	0	17	0	17	n	0.11	3	25	3	25	y	0.06	1	17	1	17	n	0.00	0	50	0	50	n	0.00	0	15	0	15	n	0.15	5	28	5	28	y	0.10	3	27	3	27	y	0.06	2	32	2	32	y	0.07	2	26	2	26	y	0.09	3	32	3	32	y	0.17	6	30	6	30	y	ENSMUSG00000032198.10	Dock6	chr9	protein_coding	dedicator of cytokinesis 6
known_NIR_19841	chr9	21734856	21735693	-	21733144	21735693	A3SS	ENSMUST00000217336.2	known	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	18	0	18	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	17	0	17	n	0.20	2	8	2	8	y	0.00	0	9	0	9	n	0.00	0	11	0	11	n	ENSMUSG00000032198.10	Dock6	chr9	protein_coding	dedicator of cytokinesis 6
known_NIR_19842	chr9	21736826	21740770	-	21736826;21737171	21737079;21740770	ES	ENSMUST00000217336.2	known	0.46	3	3.5	3	5;2	y	0.00	0	1.0	0	0;2	n	0.55	3	2.5	3	4;1	n	0.75	9	3.0	9	6;0	n	0.53	8	7.0	8	13;1	n	0.00	0	1.5	0	1;2	n	0.65	10	5.5	10	10;1	n	0.52	7	6.5	7	12;1	n	0.40	1	1.5	1	2;1	n	0.24	2	6.5	2	10;3	y	0.47	4	4.5	4	7;2	y	0.44	4	5.0	4	10;0	n	ENSMUSG00000032198.10	Dock6	chr9	protein_coding	dedicator of cytokinesis 6
known_NIR_19843	chr9	21736826;21737171	21737079;21741510	-	21736826;21740874	21740770;21741510	MXE	ENSMUST00000034728.9	known	0.50	4.0	4.0	5;3	3;5	y	0.75	1.5	0.5	0;3	0;1	n	0.57	4.0	3.0	4;4	3;3	y	0.37	3.5	6.0	6;1	9;3	n	0.59	10.0	7.0	13;7	8;6	y	0.44	2.0	2.5	1;3	0;5	n	0.62	8.0	5.0	10;6	10;0	n	0.70	10.5	4.5	12;9	7;2	y	0.60	3.0	2.0	2;4	1;3	n	0.74	10.0	3.5	10;10	2;5	y	0.47	4.0	4.5	7;1	4;5	n	0.76	11.0	3.5	10;12	4;3	y	ENSMUSG00000032198.10	Dock6	chr9	protein_coding	dedicator of cytokinesis 6
known_NIR_19844	chr9	21737171	21741510	-	21737171;21740874	21740770;21741510	ES	ENSMUST00000217336.2	known	0.46	3	3.5	3	2;5	y	0.67	3	1.5	3	2;1	n	0.67	4	2.0	4	1;3	n	0.40	1	1.5	1	0;3	n	0.67	7	3.5	7	1;6	n	0.46	3	3.5	3	2;5	y	0.92	6	0.5	6	1;0	n	0.86	9	1.5	9	1;2	n	0.67	4	2.0	4	1;3	n	0.71	10	4.0	10	3;5	y	0.22	1	3.5	1	2;5	n	0.89	12	1.5	12	0;3	n	ENSMUSG00000032198.10	Dock6	chr9	protein_coding	dedicator of cytokinesis 6
known_NIR_19845	chr9	21827239;21827860	21827713;21829318	-	21827239	21829318	cassetteExon	ENSMUST00000115351.10	known	0.00	0.0	18	0;0	18	n	0.05	0.5	10	0;1	10	n	0.04	1.5	35	0;3	35	n	0.08	1.0	11	1;1	11	n	0.00	0.0	36	0;0	36	n	0.09	4.0	43	3;5	43	y	0.00	0.0	22	0;0	22	n	0.00	0.0	32	0;0	32	n	0.00	0.0	13	0;0	13	n	0.00	0.0	23	0;0	23	n	0.00	0.0	16	0;0	16	n	0.00	0.0	18	0;0	18	n	ENSMUSG00000019066.14	Rab3d	chr9	protein_coding	RAB3D, member RAS oncogene family
known_NIR_19846	chr9	21827362	21829318	-	21827239	21829318	A3SS	ENSMUST00000115351.10	known	0.00	0	18	0	18	n	0.00	0	10	0	10	n	0.05	2	35	2	35	y	0.00	0	11	0	11	n	0.05	2	36	2	36	y	0.02	1	43	1	43	n	0.00	0	22	0	22	n	0.00	0	32	0	32	n	0.00	0	13	0	13	n	0.00	0	23	0	23	n	0.11	2	16	2	16	y	0.00	0	18	0	18	n	ENSMUSG00000019066.14	Rab3d	chr9	protein_coding	RAB3D, member RAS oncogene family
known_NIR_19847	chr9	21837653	21837971	-	21837653	21838477	A5SS	ENSMUST00000213698.2	known	0.30	12	28	12	28	y	0.41	25	36	25	36	y	0.40	17	26	17	26	y	0.45	21	26	21	26	y	0.44	36	45	36	45	y	0.36	10	18	10	18	y	0.46	26	30	26	30	y	0.23	8	27	8	27	y	0.39	20	31	20	31	y	0.44	28	35	28	35	y	0.46	34	40	34	40	y	0.49	25	26	25	26	y	ENSMUSG00000040883.19	Tmem205	chr9	protein_coding	transmembrane protein 205
known_NIR_19848	chr9	21837653	21837971	-	21837653	21838583	A5SS	ENSMUST00000238930.2	known	0.03	12	403	12	403	y	0.05	25	447	25	447	y	0.04	17	435	17	435	y	0.05	21	394	21	394	y	0.06	36	542	36	542	y	0.03	10	307	10	307	y	0.05	26	498	26	498	y	0.03	8	308	8	308	y	0.05	20	409	20	409	y	0.04	28	650	28	650	y	0.05	34	592	34	592	y	0.05	25	507	25	507	y	ENSMUSG00000040883.19	Tmem205	chr9	protein_coding	transmembrane protein 205
known_NIR_19849	chr9	21837653	21837971	-	21837653	21838588	A5SS	ENSMUST00000046831.11	known	0.01	12	1369	12	1369	y	0.02	25	1633	25	1633	y	0.02	17	993	17	993	y	0.01	21	1429	21	1429	y	0.02	36	1824	36	1824	y	0.01	10	772	10	772	y	0.01	26	1810	26	1810	y	0.01	8	880	8	880	y	0.01	20	1377	20	1377	y	0.02	28	1814	28	1814	y	0.02	34	1755	34	1755	y	0.02	25	1305	25	1305	y	ENSMUSG00000040883.19	Tmem205	chr9	protein_coding	transmembrane protein 205
known_NIR_19850	chr9	21837653	21838477	-	21837653	21838583	A5SS	ENSMUST00000238930.2	known	0.06	28	403	28	403	y	0.07	36	447	36	447	y	0.06	26	435	26	435	y	0.06	26	394	26	394	y	0.08	45	542	45	542	y	0.06	18	307	18	307	y	0.06	30	498	30	498	y	0.08	27	308	27	308	y	0.07	31	409	31	409	y	0.05	35	650	35	650	y	0.06	40	592	40	592	y	0.05	26	507	26	507	y	ENSMUSG00000040883.19	Tmem205	chr9	protein_coding	transmembrane protein 205
known_NIR_19851	chr9	21837653	21838477	-	21837653	21838588	A5SS	ENSMUST00000046831.11	known	0.02	28	1369	28	1369	y	0.02	36	1633	36	1633	y	0.03	26	993	26	993	y	0.02	26	1429	26	1429	y	0.02	45	1824	45	1824	y	0.02	18	772	18	772	y	0.02	30	1810	30	1810	y	0.03	27	880	27	880	y	0.02	31	1377	31	1377	y	0.02	35	1814	35	1814	y	0.02	40	1755	40	1755	y	0.02	26	1305	26	1305	y	ENSMUSG00000040883.19	Tmem205	chr9	protein_coding	transmembrane protein 205
known_NIR_19852	chr9	21837653	21838583	-	21837653	21838588	A5SS	ENSMUST00000046831.11	known	0.23	403	1369	403	1369	y	0.21	447	1633	447	1633	y	0.30	435	993	435	993	y	0.22	394	1429	394	1429	y	0.23	542	1824	542	1824	y	0.28	307	772	307	772	y	0.22	498	1810	498	1810	y	0.26	308	880	308	880	y	0.23	409	1377	409	1377	y	0.26	650	1814	650	1814	y	0.25	592	1755	592	1755	y	0.28	507	1305	507	1305	y	ENSMUSG00000040883.19	Tmem205	chr9	protein_coding	transmembrane protein 205
known_NIR_19853	chr9	21839038	21840389	+	21839024	21840389	A5SS	ENSMUST00000006403.7	known	0.31	5	11	5	11	y	0.25	4	12	4	12	y	0.11	2	17	2	17	y	0.25	6	18	6	18	y	0.07	3	43	3	43	y	0.00	0	15	0	15	n	0.24	9	29	9	29	y	0.18	3	14	3	14	y	0.00	0	20	0	20	n	0.20	7	28	7	28	y	0.04	1	22	1	22	n	0.00	0	21	0	21	n	ENSMUSG00000006241.17	Ccdc159	chr9	protein_coding	coiled-coil domain containing 159
known_NIR_19854	chr9	21844286	21844992	+	21844286;21844909	21844842;21844992	ES	ENSMUST00000006403.7	known	0.00	0	36.5	0	40;33	n	0.09	3	29.5	3	28;31	y	0.00	0	23.0	0	21;25	n	0.03	1	28.5	1	30;27	n	0.00	0	29.0	0	30;28	n	0.00	0	17.0	0	17;17	n	0.00	0	40.5	0	40;41	n	0.09	2	21.0	2	21;21	y	0.00	0	31.5	0	25;38	n	0.00	0	33.5	0	30;37	n	0.00	0	30.0	0	27;33	n	0.00	0	26.5	0	29;24	n	ENSMUSG00000006241.17	Ccdc159	chr9	protein_coding	coiled-coil domain containing 159
known_NIR_19855	chr9	21850674	21852056	+	21850674	21851981	A3SS	ENSMUST00000046371.13	known	0.06	1	17	1	17	n	0.08	1	11	1	11	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.16	5	26	5	26	y	0.12	2	14	2	14	y	0.00	0	18	0	18	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.18	3	14	3	14	y	0.13	2	13	2	13	y	0.00	0	13	0	13	n	ENSMUSG00000040563.14	Plppr2	chr9	protein_coding	phospholipid phosphatase related 2
known_NIR_19856	chr9	21858348	21858677	+	21858364	21858677	A5SS	ENSMUST00000046371.13	known	0.23	3	10	3	10	y	0.27	3	8	3	8	y	0.62	8	5	8	5	y	0.60	9	6	9	6	y	0.68	19	9	19	9	y	0.13	2	13	2	13	y	0.29	6	15	6	15	y	0.38	8	13	8	13	y	0.59	10	7	10	7	y	0.69	11	5	11	5	y	0.50	8	8	8	8	y	0.47	8	9	8	9	y	ENSMUSG00000040563.14	Plppr2	chr9	protein_coding	phospholipid phosphatase related 2
known_NIR_19857	chr9	21899195	21899342	-	21899200	21899342	A3SS	ENSMUST00000214026.2	known	0.17	7	34	7	34	y	0.22	8	29	8	29	y	0.00	0	14	0	14	n	0.04	2	44	2	44	y	0.18	9	42	9	42	y	0.17	3	15	3	15	y	0.11	5	42	5	42	y	0.21	4	15	4	15	y	0.11	4	32	4	32	y	0.12	4	29	4	29	y	0.11	3	24	3	24	y	0.09	3	32	3	32	y	ENSMUSG00000040146.10	Rgl3	chr9	protein_coding	ral guanine nucleotide dissociation stimulator-like 3
known_NIR_19858	chr9	21899200	21900145	-	21899200;21899571	21899342;21900145	ES	ENSMUST00000214026.2	known	0.00	0	36.5	0	34;39	n	0.11	4	31.0	4	29;33	y	0.00	0	20.0	0	14;26	n	0.04	2	43.5	2	44;43	y	0.02	1	49.0	1	42;56	n	0.00	0	19.0	0	15;23	n	0.06	2	33.0	2	42;24	y	0.00	0	18.0	0	15;21	n	0.00	0	33.0	0	32;34	n	0.00	0	38.5	0	29;48	n	0.13	4	27.0	4	24;30	y	0.09	3	31.0	3	32;30	y	ENSMUSG00000040146.10	Rgl3	chr9	protein_coding	ral guanine nucleotide dissociation stimulator-like 3
known_NIR_19859	chr9	21899200	21900145	-	21899571	21900145	A3SS&ES	ENSMUST00000214713.2	known	0.00	0	39	0	39	n	0.11	4	33	4	33	y	0.00	0	26	0	26	n	0.04	2	43	2	43	y	0.02	1	56	1	56	n	0.00	0	23	0	23	n	0.08	2	24	2	24	y	0.00	0	21	0	21	n	0.00	0	34	0	34	n	0.00	0	48	0	48	n	0.12	4	30	4	30	y	0.09	3	30	3	30	y	ENSMUSG00000040146.10	Rgl3	chr9	protein_coding	ral guanine nucleotide dissociation stimulator-like 3
known_NIR_19860	chr9	21914384	21914695	+	21914388	21914695	A5SS	ENSMUST00000216344.2	known	0.86	137	23	137	23	y	0.76	97	30	97	30	y	0.82	225	49	225	49	y	0.76	142	46	142	46	y	0.76	188	59	188	59	y	0.80	131	33	131	33	y	0.83	229	46	229	46	y	0.77	163	48	163	48	y	0.71	102	42	102	42	y	0.75	158	54	158	54	y	0.78	144	40	144	40	y	0.78	162	45	162	45	y	ENSMUSG00000003402.15	Prkcsh	chr9	protein_coding	protein kinase C substrate 80K-H
known_NIR_19861	chr9	21922892	21922970	+	21922871	21922970	A5SS	ENSMUST00000216344.2	known	0.57	86	64	86	64	y	0.63	63	37	63	37	y	0.58	122	88	122	88	y	0.59	77	54	77	54	y	0.47	85	94	85	94	y	0.59	69	47	69	47	y	0.63	115	68	115	68	y	0.59	76	52	76	52	y	0.66	72	37	72	37	y	0.59	90	62	90	62	y	0.58	83	60	83	60	y	0.55	82	67	82	67	y	ENSMUSG00000003402.15	Prkcsh	chr9	protein_coding	protein kinase C substrate 80K-H
known_NIR_19862	chr9	21968998	21969100	-	21968974	21969100	A3SS	ENSMUST00000043922.7	known	0.50	6	6	6	6	y	0.31	4	9	4	9	y	0.62	23	14	23	14	y	0.44	4	5	4	5	n	0.25	3	9	3	9	y	0.33	4	8	4	8	y	0.37	7	12	7	12	y	0.19	3	13	3	13	y	0.33	3	6	3	6	n	0.63	12	7	12	7	y	0.38	3	5	3	5	n	0.43	3	4	3	4	n	ENSMUSG00000038895.17	Zfp653	chr9	protein_coding	zinc finger protein 653
known_NIR_19863	chr9	21989561	21996645	-	21989561	21995319	A5SS&ES	ENSMUST00000180180.8	known	0.02	2	85	2	85	y	0.01	1	67	1	67	n	0.00	0	68	0	68	n	0.00	0	137	0	137	n	0.02	2	92	2	92	y	0.00	0	34	0	34	n	0.00	0	97	0	97	n	0.04	2	46	2	46	y	0.01	1	90	1	90	n	0.01	1	119	1	119	n	0.02	2	96	2	96	y	0.03	3	93	3	93	y	ENSMUSG00000066839.13	Ecsit	chr9	protein_coding	ECSIT signalling integrator
known_NIR_19864	chr9	21989561;21995504	21995319;21996645	-	21989561	21996645	cassetteExon	ENSMUST00000179422.8	known	0.96	51.0	2	85;17	2	y	0.98	45.0	1	67;23	1	n	1.00	45.5	0	68;23	0	n	1.00	83.5	0	137;30	0	n	0.97	61.5	2	92;31	2	y	1.00	24.5	0	34;15	0	n	1.00	65.5	0	97;34	0	n	0.93	28.5	2	46;11	2	y	0.98	55.5	1	90;21	1	n	0.99	80.5	1	119;42	1	n	0.97	64.5	2	96;33	2	y	0.95	61.5	3	93;30	3	y	ENSMUSG00000066839.13	Ecsit	chr9	protein_coding	ECSIT signalling integrator
known_NIR_19865	chr9	21995504	21996653	-	21995504	21996645	A5SS	ENSMUST00000098937.10	known	0.65	32	17	32	17	y	0.41	16	23	16	23	y	0.55	28	23	28	23	y	0.42	22	30	22	30	y	0.47	28	31	28	31	y	0.58	21	15	21	15	y	0.44	27	34	27	34	y	0.58	15	11	15	11	y	0.53	24	21	24	21	y	0.40	28	42	28	42	y	0.49	32	33	32	33	y	0.38	18	30	18	30	y	ENSMUSG00000066839.13	Ecsit	chr9	protein_coding	ECSIT signalling integrator
known_NIR_19866	chr9	22025239	22027951	-	22025239	22028233	A5SS	ENSMUST00000214394.2	known	0.17	1	5	1	5	n	1.00	1	0	1	0	n	0.23	3	10	3	10	y	0.67	2	1	2	1	n	0.17	1	5	1	5	n	0.43	3	4	3	4	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	4	2	4	2	n	0.22	2	7	2	7	n	0.14	1	6	1	6	n	ENSMUSG00000013822.8	Elof1	chr9	protein_coding	ELF1 homolog, elongation factor 1
known_NIR_19867	chr9	22025239	22027951	-	22025239	22028406	A5SS	ENSMUST00000013966.8	known	0.01	1	85	1	85	n	0.01	1	83	1	83	n	0.03	3	95	3	95	y	0.02	2	81	2	81	y	0.01	1	122	1	122	n	0.06	3	48	3	48	y	0.00	0	117	0	117	n	0.00	0	48	0	48	n	0.00	0	81	0	81	n	0.03	4	117	4	117	y	0.02	2	115	2	115	y	0.01	1	100	1	100	n	ENSMUSG00000013822.8	Elof1	chr9	protein_coding	ELF1 homolog, elongation factor 1
known_NIR_19868	chr9	22025239	22028233	-	22025239	22028406	A5SS	ENSMUST00000013966.8	known	0.06	5	85	5	85	y	0.00	0	83	0	83	n	0.10	10	95	10	95	y	0.01	1	81	1	81	n	0.04	5	122	5	122	y	0.08	4	48	4	48	y	0.03	4	117	4	117	y	0.00	0	48	0	48	n	0.02	2	81	2	81	y	0.02	2	117	2	117	y	0.06	7	115	7	115	y	0.06	6	100	6	100	y	ENSMUSG00000013822.8	Elof1	chr9	protein_coding	ELF1 homolog, elongation factor 1
known_NIR_19869	chr9	22041425	22042797	-	22041425	22041819	5pMXE	ENSMUST00000115315.3	known	0.00	0	13	0	13	n	0.25	3	9	3	9	y	0.00	0	50	0	50	n	0.08	1	11	1	11	n	0.07	3	42	3	42	y	0.00	0	27	0	27	n	0.00	0	37	0	37	n	0.00	0	27	0	27	n	0.00	0	3	0	3	n	0.08	1	12	1	12	n	0.00	0	19	0	19	n	0.00	0	7	0	7	n	ENSMUSG00000001348.16	Acp5	chr9	protein_coding	acid phosphatase 5, tartrate resistant
known_NIR_19870	chr9	22041425	22042797	-	22041425	22043033	A5SS	ENSMUST00000069330.14	known	0.00	0	199	0	199	n	0.02	3	180	3	180	y	0.00	0	81	0	81	n	0.00	1	227	1	227	n	0.01	3	201	3	201	y	0.00	0	65	0	65	n	0.00	0	167	0	167	n	0.00	0	91	0	91	n	0.00	0	209	0	209	n	0.00	1	296	1	296	n	0.00	0	218	0	218	n	0.00	0	238	0	238	n	ENSMUSG00000001348.16	Acp5	chr9	protein_coding	acid phosphatase 5, tartrate resistant
known_NIR_19871	chr9	22041425	22043033	-	22041425	22041819	5pMXE	ENSMUST00000115315.3	known	0.94	199	13	199	13	y	0.95	180	9	180	9	y	0.62	81	50	81	50	y	0.95	227	11	227	11	y	0.83	201	42	201	42	y	0.71	65	27	65	27	y	0.82	167	37	167	37	y	0.77	91	27	91	27	y	0.99	209	3	209	3	y	0.96	296	12	296	12	y	0.92	218	19	218	19	y	0.97	238	7	238	7	y	ENSMUSG00000001348.16	Acp5	chr9	protein_coding	acid phosphatase 5, tartrate resistant
known_NIR_19872	chr9	22041425;22041904	22041819;22043033	-	22041425	22043033	cassetteExon	ENSMUST00000069330.14	known	0.04	8.0	199	13;3	199	y	0.03	5.0	180	9;1	180	n	0.25	27.0	81	50;4	81	y	0.04	10.0	227	11;9	227	y	0.10	23.0	201	42;4	201	y	0.18	14.0	65	27;1	65	n	0.11	21.5	167	37;6	167	y	0.13	14.0	91	27;1	91	n	0.01	3.0	209	3;3	209	y	0.03	10.0	296	12;8	296	y	0.05	12.5	218	19;6	218	y	0.02	6.0	238	7;5	238	y	ENSMUSG00000001348.16	Acp5	chr9	protein_coding	acid phosphatase 5, tartrate resistant
known_NIR_19873	chr9	22068323	22069028	+	22068209	22069028	A5SS	ENSMUST00000123680.2	known	0.12	11	79	11	79	y	0.21	21	78	21	78	y	0.10	9	84	9	84	y	0.16	15	77	15	77	y	0.11	16	129	16	129	y	0.16	9	46	9	46	y	0.20	25	101	25	101	y	0.10	6	53	6	53	y	0.15	15	85	15	85	y	0.07	8	104	8	104	y	0.19	20	85	20	85	y	0.17	22	105	22	105	y	ENSMUSG00000010607.9	Pigyl	chr9	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class Y-like
known_NIR_19874	chr9	22137366	22146316	+	22137128	22146316	A5SS	ENSMUST00000215902.2	known	0.00	0	96	0	96	n	0.00	0	51	0	51	n	0.00	0	97	0	97	n	0.00	0	102	0	102	n	0.01	1	122	1	122	n	0.02	1	65	1	65	n	0.04	3	81	3	81	y	0.00	0	87	0	87	n	0.04	2	49	2	49	y	0.00	0	95	0	95	n	0.00	0	54	0	54	n	0.01	1	101	1	101	n	ENSMUSG00000057982.9	Zfp809	chr9	protein_coding	zinc finger protein 809
known_NIR_19875	chr9	22146442	22147324	+	22146442	22149838	A3SS	ENSMUST00000215902.2	known	1.00	13	0	13	0	n	0.86	18	3	18	3	y	1.00	23	0	23	0	n	0.96	23	1	23	1	n	1.00	35	0	35	0	n	1.00	20	0	20	0	n	1.00	18	0	18	0	n	1.00	15	0	15	0	n	1.00	14	0	14	0	n	1.00	27	0	27	0	n	1.00	16	0	16	0	n	0.95	18	1	18	1	n	ENSMUSG00000057982.9	Zfp809	chr9	protein_coding	zinc finger protein 809
known_NIR_19876	chr9	22146442	22147498	+	22146442	22147324	A3SS	ENSMUST00000213371.2	known	0.76	41	13	41	13	y	0.54	21	18	21	18	y	0.72	59	23	59	23	y	0.70	54	23	54	23	y	0.64	61	35	61	35	y	0.66	39	20	39	20	y	0.72	47	18	47	18	y	0.74	43	15	43	15	y	0.71	35	14	35	14	y	0.66	52	27	52	27	y	0.71	39	16	39	16	y	0.76	58	18	58	18	y	ENSMUSG00000057982.9	Zfp809	chr9	protein_coding	zinc finger protein 809
known_NIR_19877	chr9	22146442	22147498	+	22146442	22149838	A3SS	ENSMUST00000215902.2	known	1.00	41	0	41	0	n	0.88	21	3	21	3	y	1.00	59	0	59	0	n	0.98	54	1	54	1	n	1.00	61	0	61	0	n	1.00	39	0	39	0	n	1.00	47	0	47	0	n	1.00	43	0	43	0	n	1.00	35	0	35	0	n	1.00	52	0	52	0	n	1.00	39	0	39	0	n	0.98	58	1	58	1	n	ENSMUSG00000057982.9	Zfp809	chr9	protein_coding	zinc finger protein 809
known_NIR_19878	chr9	22149080	22149838	+	22146442	22149838	A5SS	ENSMUST00000215902.2	known	1.00	69	0	69	0	n	0.95	52	3	52	3	y	1.00	114	0	114	0	n	0.99	85	1	85	1	n	1.00	132	0	132	0	n	1.00	53	0	53	0	n	1.00	79	0	79	0	n	1.00	60	0	60	0	n	1.00	68	0	68	0	n	1.00	99	0	99	0	n	1.00	60	0	60	0	n	0.99	116	1	116	1	n	ENSMUSG00000057982.9	Zfp809	chr9	protein_coding	zinc finger protein 809
known_NIR_19879	chr9	22190576	22194464	-	22190576;22191855	22191749;22194464	ES	ENSMUST00000086278.7	known	0.00	0	8.0	0	11;5	n	0.00	0	12.0	0	14;10	n	0.15	5	27.5	5	35;20	y	0.10	1	9.0	1	7;11	n	0.08	2	22.0	2	30;14	y	0.10	2	19.0	2	17;21	y	0.10	1	9.0	1	12;6	n	0.00	0	17.0	0	15;19	n	0.00	0	11.0	0	14;8	n	0.11	1	8.0	1	7;9	n	0.00	0	5.0	0	1;9	n	0.00	0	4.5	0	5;4	n	ENSMUSG00000066829.8	Zfp810	chr9	protein_coding	zinc finger protein 810
known_NIR_19880	chr9	22216898	22217821	-	22216898	22218845	A5SS	ENSMUST00000086278.7	known	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.22	5	18	5	18	y	0.17	1	5	1	5	n	0.14	1	6	1	6	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.60	6	4	6	4	y	0.25	2	6	2	6	n	0.08	1	12	1	12	n	0.29	2	5	2	5	n	0.10	1	9	1	9	n	ENSMUSG00000066829.8	Zfp810	chr9	protein_coding	zinc finger protein 810
known_NIR_19881	chr9	22360150	22361098	-	22323241	22361098	A3SS	ENSMUST00000215715.2	known	1.00	285	0	285	0	n	1.00	367	0	367	0	n	0.99	436	3	436	3	y	1.00	314	0	314	0	n	1.00	446	0	446	0	n	1.00	191	0	191	0	n	1.00	404	1	404	1	n	1.00	258	0	258	0	n	1.00	253	0	253	0	n	1.00	371	0	371	0	n	1.00	311	0	311	0	n	1.00	270	0	270	0	n	ENSMUSG00000032239.11	Rp9	chr9	protein_coding	retinitis pigmentosa 9 (human)
known_NIR_19882	chr9	22387351	22402114	+	22387921	22402114	A5SS&ES	ENSMUST00000128812.8	known	0.56	5	4	5	4	n	0.55	6	5	6	5	y	0.50	12	12	12	12	y	0.25	3	9	3	9	y	0.50	2	2	2	2	n	0.43	3	4	3	4	n	0.42	5	7	5	7	y	0.69	9	4	9	4	y	0.50	1	1	1	1	n	0.80	4	1	4	1	n	0.60	3	2	3	2	n	0.33	1	2	1	2	n	ENSMUSG00000035919.17	Bbs9	chr9	protein_coding	Bardet-Biedl syndrome 9 (human)
known_NIR_19883	chr9	22387351;22387921	22387866;22402114	+	22387351	22402114	cassetteExon	ENSMUST00000039798.16	known	0.41	3.5	5	3;4	5	y	0.45	5.0	6	5;5	6	y	0.45	10.0	12	8;12	12	y	0.71	7.5	3	6;9	3	y	0.56	2.5	2	3;2	2	n	0.50	3.0	3	2;4	3	n	0.50	5.0	5	3;7	5	y	0.38	5.5	9	7;4	9	y	0.50	1.0	1	1;1	1	n	0.20	1.0	4	1;1	4	n	0.40	2.0	3	2;2	3	n	0.71	2.5	1	3;2	1	n	ENSMUSG00000035919.17	Bbs9	chr9	protein_coding	Bardet-Biedl syndrome 9 (human)
known_NIR_19884	chr9	22387486	22387866	+	22387351	22387866	A5SS	ENSMUST00000150395.8	known	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.20	2	8	2	8	y	0.25	2	6	2	6	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000035919.17	Bbs9	chr9	protein_coding	Bardet-Biedl syndrome 9 (human)
known_NIR_19885	chr9	22387486	22402114	+	22387351	22402114	A5SS	ENSMUST00000039798.16	known	0.00	0	5	0	5	n	0.14	1	6	1	6	n	0.08	1	12	1	12	n	0.40	2	3	2	3	n	0.71	5	2	5	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.40	6	9	6	9	y	0.50	1	1	1	1	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.67	2	1	2	1	n	ENSMUSG00000035919.17	Bbs9	chr9	protein_coding	Bardet-Biedl syndrome 9 (human)
known_NIR_19886	chr9	22387486	22402114	+	22387921	22402114	A5SS&ES	ENSMUST00000150395.8	known	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.08	1	12	1	12	n	0.18	2	9	2	9	y	0.71	5	2	5	2	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.60	6	4	6	4	y	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.50	2	2	2	2	n	ENSMUSG00000035919.17	Bbs9	chr9	protein_coding	Bardet-Biedl syndrome 9 (human)
known_NIR_19887	chr9	22387486;22387921	22387866;22402114	+	22387486	22402114	cassetteExon	ENSMUST00000147712.8	known	1.00	2.5	0	1;4	0	n	0.71	2.5	1	0;5	1	n	0.88	7.0	1	2;12	1	n	0.73	5.5	2	2;9	2	y	0.17	1.0	5	0;2	5	n	1.00	2.0	0	0;4	0	n	1.00	4.0	0	1;7	0	n	0.25	2.0	6	0;4	6	n	0.33	0.5	1	0;1	1	n	1.00	0.5	0	0;1	0	n	0.50	1.0	1	0;2	1	n	0.33	1.0	2	0;2	2	n	ENSMUSG00000035919.17	Bbs9	chr9	protein_coding	Bardet-Biedl syndrome 9 (human)
known_NIR_19888	chr9	24386749	24393225	-	24386749;24389123	24388945;24393225	ES	ENSMUST00000115277.9	known	0.99	42	0.5	42	0;1	n	1.00	17	0.0	17	0;0	n	0.99	299	2.5	299	3;2	y	1.00	55	0.0	55	0;0	n	0.99	108	1.0	108	0;2	n	0.99	143	1.0	143	2;0	n	0.99	82	0.5	82	1;0	n	0.99	106	1.0	106	0;2	n	1.00	26	0.0	26	0;0	n	0.99	76	0.5	76	0;1	n	0.97	17	0.5	17	1;0	n	0.97	45	1.5	45	1;2	n	ENSMUSG00000043067.16	Dpy19l1	chr9	protein_coding	dpy-19-like 1 (C. elegans)
known_NIR_19889	chr9	25176792	25186591	+	25176792	25188840	A3SS	ENSMUST00000115272.9	known	0.00	0	59	0	59	n	0.00	0	39	0	39	n	0.02	2	109	2	109	y	0.00	0	86	0	86	n	0.00	0	101	0	101	n	0.06	3	50	3	50	y	0.00	0	99	0	99	n	0.00	0	66	0	66	n	0.00	0	61	0	61	n	0.00	0	77	0	77	n	0.02	1	57	1	57	n	0.03	3	95	3	95	y	ENSMUSG00000001833.18	Septin7	chr9	protein_coding	septin 7
known_NIR_19890	chr9	25199614	25200874	+	25199614	25204981	A3SS	ENSMUST00000115272.9	known	0.00	0	74	0	74	n	0.00	0	53	0	53	n	0.02	2	131	2	131	y	0.00	0	98	0	98	n	0.01	1	128	1	128	n	0.00	0	58	0	58	n	0.00	0	100	0	100	n	0.00	0	53	0	53	n	0.00	0	78	0	78	n	0.00	0	83	0	83	n	0.00	0	85	0	85	n	0.00	0	100	0	100	n	ENSMUSG00000001833.18	Septin7	chr9	protein_coding	septin 7
known_NIR_19891	chr9	26903584	26910690	-	26903556	26910690	A3SS	ENSMUST00000120367.8	known	0.08	7	83	7	83	y	0.11	11	90	11	90	y	0.14	9	57	9	57	y	0.13	18	120	18	120	y	0.12	18	137	18	137	y	0.02	1	51	1	51	n	0.15	18	106	18	106	y	0.12	10	74	10	74	y	0.16	18	98	18	98	y	0.16	37	189	37	189	y	0.16	19	101	19	101	y	0.12	20	149	20	149	y	ENSMUSG00000031969.17	Acad8	chr9	protein_coding	acyl-Coenzyme A dehydrogenase family, member 8
known_NIR_19892	chr9	26915074	26916442	+	26915060	26916442	A5SS	ENSMUST00000214910.2	known	0.86	55	9	55	9	y	0.88	68	9	68	9	y	0.95	58	3	58	3	y	0.97	60	2	60	2	y	0.92	72	6	72	6	y	0.88	30	4	30	4	y	0.80	53	13	53	13	y	0.90	35	4	35	4	y	0.90	54	6	54	6	y	1.00	70	0	70	0	n	0.95	63	3	63	3	y	0.84	76	14	76	14	y	ENSMUSG00000035443.11	Thyn1	chr9	protein_coding	thymocyte nuclear protein 1
known_NIR_19893	chr9	26917743;26918247	26918097;26918454	+	26917743	26918454	cassetteExon	ENSMUST00000213770.2	known	0.77	59.5	18	56;63	18	y	0.67	62.0	31	58;66	31	y	0.69	36.0	16	41;31	16	y	0.77	44.0	13	37;51	13	y	0.78	60.5	17	67;54	17	y	0.67	20.5	10	25;16	10	y	0.75	56.5	19	65;48	19	y	0.83	25.0	5	27;23	5	y	0.67	34.5	17	29;40	17	y	0.74	69.0	24	74;64	24	y	0.74	67.0	23	69;65	23	y	0.75	56.5	19	62;51	19	y	ENSMUSG00000035443.11	Thyn1	chr9	protein_coding	thymocyte nuclear protein 1
known_NIR_19894	chr9	26918247	26918457	+	26918247	26918454	A3SS	ENSMUST00000213683.2	known	0.00	0	63	0	63	n	0.00	0	66	0	66	n	0.00	0	31	0	31	n	0.04	2	51	2	51	y	0.00	0	54	0	54	n	0.06	1	16	1	16	n	0.00	0	48	0	48	n	0.08	2	23	2	23	y	0.11	5	40	5	40	y	0.00	0	64	0	64	n	0.00	0	65	0	65	n	0.00	0	51	0	51	n	ENSMUSG00000035443.11	Thyn1	chr9	protein_coding	thymocyte nuclear protein 1
known_NIR_19895	chr9	26941795	26948281	+	26942126	26948281	5pMXE	ENSMUST00000216677.2	known	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.09	1	10	1	10	n	0.00	0	5	0	5	n	0.20	2	8	2	8	y	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	ENSMUSG00000035024.17	Ncapd3	chr9	protein_coding	non-SMC condensin II complex, subunit D3
known_NIR_19896	chr9	26985760	26993702	+	26984098	26993702	A5SS	ENSMUST00000073127.14	known	0.68	13	6	13	6	y	0.67	6	3	6	3	n	0.70	7	3	7	3	y	0.68	13	6	13	6	y	0.53	10	9	10	9	y	0.50	3	3	3	3	n	0.72	21	8	21	8	y	0.54	7	6	7	6	y	0.94	15	1	15	1	n	0.82	14	3	14	3	y	0.80	12	3	12	3	y	0.68	17	8	17	8	y	ENSMUSG00000035024.17	Ncapd3	chr9	protein_coding	non-SMC condensin II complex, subunit D3
known_NIR_19897	chr9	30351521	30374516	+	30351521;30373711	30373527;30374516	ES	ENSMUST00000164099.3	known	0.14	6	37.0	6	43;31	y	0.07	2	28.0	2	24;32	y	0.22	10	36.5	10	44;29	y	0.05	2	35.5	2	30;41	y	0.16	9	49.0	9	49;49	y	0.18	5	23.5	5	29;18	y	0.17	9	45.0	9	45;45	y	0.05	1	19.0	1	23;15	n	0.12	3	22.0	3	17;27	y	0.23	12	40.5	12	42;39	y	0.30	10	23.5	10	28;19	y	0.15	5	28.5	5	32;25	y	ENSMUSG00000031993.8	Snx19	chr9	protein_coding	sorting nexin 19
known_NIR_19898	chr9	30973421	30975475	+	30973421	30975529	A3SS	ENSMUST00000216649.2	known	0.95	35	2	35	2	y	1.00	25	0	25	0	n	0.92	22	2	22	2	y	0.87	26	4	26	4	y	0.89	48	6	48	6	y	0.94	34	2	34	2	y	0.83	35	7	35	7	y	0.80	8	2	8	2	y	0.88	21	3	21	3	y	0.88	50	7	50	7	y	0.79	22	6	22	6	y	0.94	44	3	44	3	y	ENSMUSG00000047412.17	Zbtb44	chr9	protein_coding	zinc finger and BTB domain containing 44
known_NIR_19899	chr9	30978255	30980041	+	30978038	30980041	A5SS	ENSMUST00000216649.2	known	0.33	12	24	12	24	y	0.37	11	19	11	19	y	0.28	15	39	15	39	y	0.30	13	30	13	30	y	0.24	17	54	17	54	y	0.27	6	16	6	16	y	0.38	18	29	18	29	y	0.26	9	25	9	25	y	0.38	13	21	13	21	y	0.25	19	57	19	57	y	0.25	9	27	9	27	y	0.21	13	50	13	50	y	ENSMUSG00000047412.17	Zbtb44	chr9	protein_coding	zinc finger and BTB domain containing 44
known_NIR_19900	chr9	31064795	31068991	-	31064795	31067486	5pMXE	ENSMUST00000214396.2	known	0.96	392	17	392	17	y	0.95	305	15	305	15	y	0.93	199	14	199	14	y	0.97	458	16	458	16	y	0.94	497	33	497	33	y	0.97	150	4	150	4	y	0.96	463	17	463	17	y	0.96	237	9	237	9	y	0.96	370	15	370	15	y	0.95	596	30	596	30	y	0.96	348	15	348	15	y	0.96	490	21	490	21	y	ENSMUSG00000031996.18	Aplp2	chr9	protein_coding	amyloid beta (A4) precursor-like protein 2
known_NIR_19901	chr9	31064795	31068991	-	31067521	31068991	3pMXE	ENSMUST00000213254.2	known	0.96	392	18	392	18	y	0.97	305	11	305	11	y	0.95	199	10	199	10	y	0.96	458	21	458	21	y	0.94	497	30	497	30	y	0.96	150	6	150	6	y	0.96	463	18	463	18	y	0.96	237	9	237	9	y	0.94	370	22	370	22	y	0.95	596	31	596	31	y	0.96	348	15	348	15	y	0.95	490	24	490	24	y	ENSMUSG00000031996.18	Aplp2	chr9	protein_coding	amyloid beta (A4) precursor-like protein 2
known_NIR_19902	chr9	31064795;31067521	31067486;31068991	-	31064795	31068991	cassetteExon	ENSMUST00000217641.2	known	0.04	17.5	392	17;18	392	y	0.04	13.0	305	15;11	305	y	0.06	12.0	199	14;10	199	y	0.04	18.5	458	16;21	458	y	0.06	31.5	497	33;30	497	y	0.03	5.0	150	4;6	150	y	0.04	17.5	463	17;18	463	y	0.04	9.0	237	9;9	237	y	0.05	18.5	370	15;22	370	y	0.05	30.5	596	30;31	596	y	0.04	15.0	348	15;15	348	y	0.04	22.5	490	21;24	490	y	ENSMUSG00000031996.18	Aplp2	chr9	protein_coding	amyloid beta (A4) precursor-like protein 2
known_NIR_19903	chr9	31075969	31080004	-	31075969	31078857	5pMXE	ENSMUST00000217516.2	known	0.15	45	258	45	258	y	0.19	46	198	46	198	y	0.23	55	184	55	184	y	0.17	70	353	70	353	y	0.22	105	365	105	365	y	0.20	31	121	31	121	y	0.17	69	340	69	340	y	0.15	32	182	32	182	y	0.19	51	215	51	215	y	0.12	60	437	60	437	y	0.15	53	306	53	306	y	0.15	64	365	64	365	y	ENSMUSG00000031996.18	Aplp2	chr9	protein_coding	amyloid beta (A4) precursor-like protein 2
known_NIR_19904	chr9	31075969;31079024	31078857;31080004	-	31075969	31080004	cassetteExon	ENSMUST00000217641.2	known	0.84	234.5	45	258;211	45	y	0.80	181.5	46	198;165	46	y	0.74	153.0	55	184;122	55	y	0.83	342.0	70	353;331	70	y	0.76	337.0	105	365;309	105	y	0.77	106.5	31	121;92	31	y	0.81	301.5	69	340;263	69	y	0.83	161.5	32	182;141	32	y	0.80	206.5	51	215;198	51	y	0.87	405.0	60	437;373	60	y	0.83	260.0	53	306;214	53	y	0.85	352.5	64	365;340	64	y	ENSMUSG00000031996.18	Aplp2	chr9	protein_coding	amyloid beta (A4) precursor-like protein 2
known_NIR_19905	chr9	32063309;32064005	32063964;32064336	+	32063309	32064336	cassetteExon	ENSMUST00000174641.8	known	0.08	0.5	6	1;0	6	n	0.50	1.0	1	1;1	1	n	0.00	0.0	3	0;0	3	n	0.00	0.0	1	0;0	1	n	0.15	2.0	11	2;2	11	y	-	-	-	-	-	-	0.14	0.5	3	0;1	3	n	0.20	2.0	8	0;4	8	n	0.00	0.0	4	0;0	4	n	0.00	0.0	4	0;0	4	n	-	-	-	-	-	-	0.00	0.0	5	0;0	5	n	ENSMUSG00000041444.15	Arhgap32	chr9	protein_coding	Rho GTPase activating protein 32
known_NIR_19906	chr9	3335594	3343015	+	3338591	3343015	A5SS&ES	ENSMUST00000212294.2	known	0.00	0	4	0	4	n	-	-	-	-	-	-	0.50	2	2	2	2	n	0.00	0	1	0	1	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.20	3	12	3	12	y	0.00	0	7	0	7	n	0.00	0	12	0	12	n	ENSMUSG00000025899.15	Alkbh8	chr9	protein_coding	alkB homolog 8, tRNA methyltransferase
known_NIR_19907	chr9	3335748	3338456	+	3335594	3338456	A5SS	ENSMUST00000211884.2	known	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.71	5	2	5	2	n	1.00	1	0	1	0	n	0.67	2	1	2	1	n	0.29	2	5	2	5	n	0.56	5	4	5	4	n	1.00	2	0	2	0	n	0.00	0	2	0	2	n	0.83	5	1	5	1	n	0.50	2	2	2	2	n	0.38	5	8	5	8	y	ENSMUSG00000025899.15	Alkbh8	chr9	protein_coding	alkB homolog 8, tRNA methyltransferase
known_NIR_19908	chr9	3379336	3382694	+	3369914	3382694	A5SS	ENSMUST00000212294.2	known	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.00	0	16	0	16	n	0.00	0	3	0	3	n	0.06	1	16	1	16	n	0.25	2	6	2	6	n	0.05	1	19	1	19	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.20	3	12	3	12	y	0.12	1	7	1	7	n	0.00	0	8	0	8	n	ENSMUSG00000025899.15	Alkbh8	chr9	protein_coding	alkB homolog 8, tRNA methyltransferase
known_NIR_19909	chr9	34966945	35010195	-	34966945	35027994	A5SS	ENSMUST00000034537.8	known	0.01	2	145	2	145	y	0.00	0	96	0	96	n	0.00	0	119	0	119	n	0.00	0	89	0	89	n	0.00	0	252	0	252	n	0.00	0	78	0	78	n	0.01	1	178	1	178	n	0.01	1	83	1	83	n	0.02	3	122	3	122	y	0.02	4	180	4	180	y	0.03	3	102	3	102	y	0.01	2	134	2	134	y	ENSMUSG00000032038.8	St3gal4	chr9	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 4
known_NIR_19910	chr9	34966945	35010195	-	34966945	35030299	A5SS	ENSMUST00000213526.2	known	0.04	2	45	2	45	y	0.00	0	70	0	70	n	0.00	0	61	0	61	n	0.00	0	66	0	66	n	0.00	0	105	0	105	n	0.00	0	78	0	78	n	0.01	1	80	1	80	n	0.02	1	63	1	63	n	0.04	3	67	3	67	y	0.06	4	60	4	60	y	0.10	3	27	3	27	y	0.04	2	45	2	45	y	ENSMUSG00000032038.8	St3gal4	chr9	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 4
known_NIR_19911	chr9	34966945	35017871	-	34966945	35027994	A5SS	ENSMUST00000034537.8	known	0.01	1	145	1	145	n	0.02	2	96	2	96	y	0.00	0	119	0	119	n	0.02	2	89	2	89	y	0.01	3	252	3	252	y	0.00	0	78	0	78	n	0.03	5	178	5	178	y	0.01	1	83	1	83	n	0.02	2	122	2	122	y	0.01	2	180	2	180	y	0.00	0	102	0	102	n	0.00	0	134	0	134	n	ENSMUSG00000032038.8	St3gal4	chr9	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 4
known_NIR_19912	chr9	34966945	35017871	-	34966945	35030299	A5SS	ENSMUST00000213526.2	known	0.02	1	45	1	45	n	0.03	2	70	2	70	y	0.00	0	61	0	61	n	0.03	2	66	2	66	y	0.03	3	105	3	105	y	0.00	0	78	0	78	n	0.06	5	80	5	80	y	0.02	1	63	1	63	n	0.03	2	67	2	67	y	0.03	2	60	2	60	y	0.00	0	27	0	27	n	0.00	0	45	0	45	n	ENSMUSG00000032038.8	St3gal4	chr9	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 4
known_NIR_19913	chr9	34966945	35030299	-	34966945	35027994	5pMXE	ENSMUST00000034537.8	known	0.24	45	145	45	145	y	0.42	70	96	70	96	y	0.34	61	119	61	119	y	0.43	66	89	66	89	y	0.29	105	252	105	252	y	0.50	78	78	78	78	y	0.31	80	178	80	178	y	0.43	63	83	63	83	y	0.35	67	122	67	122	y	0.25	60	180	60	180	y	0.21	27	102	27	102	y	0.25	45	134	45	134	y	ENSMUSG00000032038.8	St3gal4	chr9	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 4
known_NIR_19914	chr9	35029642	35037512	+	35029642	35034897	A3SS&ES	ENSMUST00000093873.9	known	0.00	0	46	0	46	n	0.00	0	30	0	30	n	0.00	0	22	0	22	n	0.06	2	33	2	33	y	0.00	0	47	0	47	n	0.00	0	20	0	20	n	0.00	0	48	0	48	n	0.00	0	20	0	20	n	0.00	0	53	0	53	n	0.00	0	36	0	36	n	0.00	0	50	0	50	n	0.00	0	32	0	32	n	ENSMUSG00000070315.13	4930581F22Rik	chr9	lncRNA	RIKEN cDNA 4930581F22 gene
known_NIR_19915	chr9	35034990	35037508	+	35034990	35040075	A3SS	ENSMUST00000093873.9	known	1.00	39	0	39	0	n	1.00	34	0	34	0	n	1.00	20	0	20	0	n	1.00	27	0	27	0	n	1.00	48	0	48	0	n	1.00	24	0	24	0	n	1.00	36	0	36	0	n	1.00	15	0	15	0	n	0.94	33	2	33	2	y	1.00	34	0	34	0	n	1.00	19	0	19	0	n	1.00	42	0	42	0	n	ENSMUSG00000070315.13	4930581F22Rik	chr9	lncRNA	RIKEN cDNA 4930581F22 gene
known_NIR_19916	chr9	35102992	35110507	-	35102992	35110517	A5SS	ENSMUST00000175765.8	known	0.78	29	8	29	8	y	0.42	5	7	5	7	y	0.62	20	12	20	12	y	0.52	17	16	17	16	y	0.45	22	27	22	27	y	0.35	12	22	12	22	y	0.50	19	19	19	19	y	0.53	10	9	10	9	y	0.63	22	13	22	13	y	0.67	20	10	20	10	y	0.55	11	9	11	9	y	0.45	20	24	20	24	y	ENSMUSG00000032041.16	Tirap	chr9	protein_coding	toll-interleukin 1 receptor (TIR) domain-containing adaptor protein
known_NIR_19917	chr9	35110615	35111157	-	35110615	35111153	A5SS	ENSMUST00000176531.8	known	0.20	4	16	4	16	y	0.00	0	11	0	11	n	0.00	0	23	0	23	n	0.03	1	30	1	30	n	0.12	5	35	5	35	y	0.21	4	15	4	15	y	0.11	2	17	2	17	y	0.00	0	16	0	16	n	0.00	0	14	0	14	n	0.15	3	17	3	17	y	0.00	0	10	0	10	n	0.07	2	26	2	26	y	ENSMUSG00000032041.16	Tirap	chr9	protein_coding	toll-interleukin 1 receptor (TIR) domain-containing adaptor protein
known_NIR_19918	chr9	35116437	35116601	-	35116419	35116601	A3SS	ENSMUST00000154691.8	known	0.03	2	78	2	78	y	0.00	0	80	0	80	n	0.00	0	115	0	115	n	0.03	2	77	2	77	y	0.02	3	137	3	137	y	0.03	2	74	2	74	y	0.02	2	104	2	104	y	0.00	0	68	0	68	n	0.03	2	62	2	62	y	0.03	3	115	3	115	y	0.01	1	78	1	78	n	0.01	1	89	1	89	n	ENSMUSG00000039048.16	Foxred1	chr9	protein_coding	FAD-dependent oxidoreductase domain containing 1
known_NIR_19919	chr9	35119278	35120334	-	35117595	35120334	A3SS	ENSMUST00000142595.8	known	1.00	5	0	5	0	n	0.80	4	1	4	1	n	0.90	26	3	26	3	y	1.00	4	0	4	0	n	0.79	15	4	15	4	y	0.75	6	2	6	2	n	1.00	15	0	15	0	n	0.88	14	2	14	2	y	1.00	3	0	3	0	n	1.00	10	0	10	0	n	0.67	6	3	6	3	n	1.00	18	0	18	0	n	ENSMUSG00000039048.16	Foxred1	chr9	protein_coding	FAD-dependent oxidoreductase domain containing 1
known_NIR_19920	chr9	35119278	35120334	-	35119282	35120334	A3SS	ENSMUST00000154691.8	known	0.07	5	66	5	66	y	0.05	4	74	4	74	y	0.17	26	131	26	131	y	0.05	4	81	4	81	y	0.12	15	114	15	114	y	0.08	6	72	6	72	y	0.12	15	109	15	109	y	0.18	14	62	14	62	y	0.05	3	54	3	54	y	0.09	10	107	10	107	y	0.06	6	88	6	88	y	0.17	18	91	18	91	y	ENSMUSG00000039048.16	Foxred1	chr9	protein_coding	FAD-dependent oxidoreductase domain containing 1
known_NIR_19921	chr9	35119282	35120334	-	35117595	35120334	A3SS	ENSMUST00000142595.8	known	1.00	66	0	66	0	n	0.99	74	1	74	1	n	0.98	131	3	131	3	y	1.00	81	0	81	0	n	0.97	114	4	114	4	y	0.97	72	2	72	2	y	1.00	109	0	109	0	n	0.97	62	2	62	2	y	1.00	54	0	54	0	n	1.00	107	0	107	0	n	0.97	88	3	88	3	y	1.00	91	0	91	0	n	ENSMUSG00000039048.16	Foxred1	chr9	protein_coding	FAD-dependent oxidoreductase domain containing 1
known_NIR_19922	chr9	35120825	35121236	-	35120825	35121241	A5SS	ENSMUST00000043805.15	known	0.00	0	57	0	57	n	0.00	0	70	0	70	n	0.01	1	125	1	125	n	0.05	4	69	4	69	y	0.07	6	84	6	84	y	0.01	1	80	1	80	n	0.00	0	90	0	90	n	0.03	2	60	2	60	y	0.02	1	52	1	52	n	0.03	3	104	3	104	y	0.00	0	55	0	55	n	0.05	4	71	4	71	y	ENSMUSG00000039048.16	Foxred1	chr9	protein_coding	FAD-dependent oxidoreductase domain containing 1
known_NIR_19923	chr9	35120825	35121241	-	35120803	35121241	A3SS	ENSMUST00000154691.8	known	0.88	57	8	57	8	y	0.97	70	2	70	2	y	0.98	125	3	125	3	y	0.93	69	5	69	5	y	0.93	84	6	84	6	y	0.94	80	5	80	5	y	0.91	90	9	90	9	y	0.91	60	6	60	6	y	0.96	52	2	52	2	y	0.96	104	4	104	4	y	0.92	55	5	55	5	y	1.00	71	0	71	0	n	ENSMUSG00000039048.16	Foxred1	chr9	protein_coding	FAD-dependent oxidoreductase domain containing 1
known_NIR_19924	chr9	35121461	35122103	-	35121461	35122041	A5SS	ENSMUST00000154691.8	known	1.00	37	0	37	0	n	1.00	26	0	26	0	n	1.00	84	0	84	0	n	1.00	51	0	51	0	n	0.93	69	5	69	5	y	0.96	46	2	46	2	y	1.00	48	0	48	0	n	0.97	60	2	60	2	y	0.93	40	3	40	3	y	0.99	73	1	73	1	n	1.00	41	0	41	0	n	1.00	51	0	51	0	n	ENSMUSG00000039048.16	Foxred1	chr9	protein_coding	FAD-dependent oxidoreductase domain containing 1
known_NIR_19925	chr9	35127109	35159036	+	35127109	35127234	3pMXE	ENSMUST00000034541.12	known	0.00	0	461	0	461	n	0.00	0	505	0	505	n	0.00	0	1029	0	1029	n	0.00	0	466	0	466	n	0.00	0	727	0	727	n	0.00	1	535	1	535	n	0.00	0	630	0	630	n	0.00	0	454	0	454	n	0.00	0	358	0	358	n	0.00	2	633	2	633	y	0.00	0	518	0	518	n	0.00	0	499	0	499	n	ENSMUSG00000032042.12	Srpr	chr9	protein_coding	signal recognition particle receptor ('docking protein')
known_NIR_19926	chr9	35132900	35134910	-	35132961	35134910	A3SS	ENSMUST00000063782.12	known	0.00	0	11	0	11	n	0.00	0	21	0	21	n	0.00	0	25	0	25	n	0.00	0	15	0	15	n	0.00	0	26	0	26	n	0.00	0	12	0	12	n	0.00	0	19	0	19	n	0.00	0	7	0	7	n	0.14	2	12	2	12	y	0.04	1	23	1	23	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	ENSMUSG00000050471.18	Fam118b	chr9	protein_coding	family with sequence similarity 118, member B
known_NIR_19927	chr9	35135038;35138687	35138460;35146527	-	35135038	35146527	cassetteExon	ENSMUST00000063782.12	known	0.94	15.5	1	12;19	1	n	0.90	9.0	1	12;6	1	n	1.00	26.5	0	26;27	0	n	0.86	12.0	2	16;8	2	y	0.89	23.5	3	26;21	3	y	0.80	8.0	2	8;8	2	y	1.00	14.0	0	13;15	0	n	1.00	13.5	0	12;15	0	n	0.90	9.5	1	4;15	1	n	0.94	16.0	1	24;8	1	n	0.79	7.5	2	8;7	2	y	1.00	12.0	0	18;6	0	n	ENSMUSG00000050471.18	Fam118b	chr9	protein_coding	family with sequence similarity 118, member B
known_NIR_19928	chr9	35146779	35179019	-	35146779;35156002	35155910;35179019	ES	ENSMUST00000063782.12	known	0.09	1	10.5	1	8;13	n	0.09	1	10.0	1	9;11	n	0.12	3	23.0	3	27;19	y	0.10	1	9.5	1	12;7	n	0.07	1	12.5	1	15;10	n	0.00	0	8.5	0	12;5	n	0.17	2	10.0	2	15;5	y	0.14	1	6.0	1	8;4	n	0.00	0	8.5	0	9;8	n	0.36	2	3.5	2	5;2	n	0.00	0	7.5	0	9;6	n	0.00	0	8.5	0	13;4	n	ENSMUSG00000050471.18	Fam118b	chr9	protein_coding	family with sequence similarity 118, member B
known_NIR_19929	chr9	36670163	36674633	-	36670163	36670499	5pMXE	ENSMUST00000143881.2	known	0.00	0	144	0	144	n	0.02	2	84	2	84	y	0.00	2	439	2	439	y	0.01	2	181	2	181	y	0.01	3	336	3	336	y	0.00	0	285	0	285	n	0.01	1	174	1	174	n	0.00	0	287	0	287	n	0.00	0	101	0	101	n	0.02	3	195	3	195	y	0.03	4	124	4	124	y	0.02	3	185	3	185	y	ENSMUSG00000032116.19	Stt3a	chr9	protein_coding	STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)
known_NIR_19930	chr9	36670163	36674633	-	36670163;36670620	36670499;36674633	ES	ENSMUST00000120381.9	known	0.00	0	119.0	0	144;94	n	0.02	2	79.0	2	84;74	y	0.01	2	381.5	2	439;324	y	0.01	2	160.0	2	181;139	y	0.01	3	295.5	3	336;255	y	0.00	0	237.5	0	285;190	n	0.01	1	143.0	1	174;112	n	0.00	0	247.5	0	287;208	n	0.00	0	99.5	0	101;98	n	0.02	3	180.5	3	195;166	y	0.04	4	108.0	4	124;92	y	0.02	3	157.0	3	185;129	y	ENSMUSG00000032116.19	Stt3a	chr9	protein_coding	STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)
known_NIR_19931	chr9	36670163	36674633	-	36670620	36674633	3pMXE	ENSMUST00000133060.3	known	0.00	0	94	0	94	n	0.03	2	74	2	74	y	0.01	2	324	2	324	y	0.01	2	139	2	139	y	0.01	3	255	3	255	y	0.00	0	190	0	190	n	0.01	1	112	1	112	n	0.00	0	208	0	208	n	0.00	0	98	0	98	n	0.02	3	166	3	166	y	0.04	4	92	4	92	y	0.02	3	129	3	129	y	ENSMUSG00000032116.19	Stt3a	chr9	protein_coding	STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)
known_NIR_19932	chr9	36676476	36678359	-	36676476	36678846	A5SS	ENSMUST00000120381.9	known	0.03	3	88	3	88	y	0.08	6	65	6	65	y	0.05	16	278	16	278	y	0.02	3	126	3	126	y	0.04	9	201	9	201	y	0.01	2	146	2	146	y	0.02	2	111	2	111	y	0.03	6	175	6	175	y	0.01	1	88	1	88	n	0.03	4	114	4	114	y	0.03	3	88	3	88	y	0.04	6	133	6	133	y	ENSMUSG00000032116.19	Stt3a	chr9	protein_coding	STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)
known_NIR_19933	chr9	36699549	36704536	-	36699549;36701221	36701076;36704536	ES	ENSMUST00000239021.2	known	0.00	0	368.5	0	421;316	n	0.00	0	331.0	0	378;284	n	0.00	0	318.0	0	366;270	n	0.00	2	460.5	2	516;405	y	0.00	0	685.0	0	759;611	n	0.00	1	269.0	1	289;249	n	0.00	0	626.5	0	703;550	n	0.00	1	372.5	1	406;339	n	0.00	0	326.0	0	370;282	n	0.00	3	646.0	3	695;597	y	0.00	0	325.0	0	374;276	n	0.00	1	479.5	1	564;395	n	ENSMUSG00000062762.18	Ei24	chr9	protein_coding	etoposide induced 2.4 mRNA
known_NIR_19934	chr9	36704645	36708255	-	36704645	36708300	A5SS	ENSMUST00000239021.2	known	0.11	4	33	4	33	y	0.08	1	12	1	12	n	0.06	1	16	1	16	n	0.06	1	17	1	17	n	0.10	4	35	4	35	y	0.33	2	4	2	4	n	0.03	1	32	1	32	n	0.07	1	14	1	14	n	0.17	2	10	2	10	y	0.12	4	29	4	29	y	0.00	0	15	0	15	n	0.11	2	17	2	17	y	ENSMUSG00000062762.18	Ei24	chr9	protein_coding	etoposide induced 2.4 mRNA
known_NIR_19935	chr9	36704645	36708255	-	36704645	36708509	A5SS	ENSMUST00000238932.2	known	0.02	4	179	4	179	y	0.01	1	133	1	133	n	0.01	1	143	1	143	n	0.00	1	216	1	216	n	0.01	4	346	4	346	y	0.02	2	127	2	127	y	0.00	1	253	1	253	n	0.01	1	169	1	169	n	0.01	2	145	2	145	y	0.01	4	283	4	283	y	0.00	0	154	0	154	n	0.01	2	262	2	262	y	ENSMUSG00000062762.18	Ei24	chr9	protein_coding	etoposide induced 2.4 mRNA
known_NIR_19936	chr9	36704645	36708509	-	36704645	36708300	5pMXE	ENSMUST00000239021.2	known	0.84	179	33	179	33	y	0.92	133	12	133	12	y	0.90	143	16	143	16	y	0.93	216	17	216	17	y	0.91	346	35	346	35	y	0.97	127	4	127	4	y	0.89	253	32	253	32	y	0.92	169	14	169	14	y	0.94	145	10	145	10	y	0.91	283	29	283	29	y	0.91	154	15	154	15	y	0.94	262	17	262	17	y	ENSMUSG00000062762.18	Ei24	chr9	protein_coding	etoposide induced 2.4 mRNA
known_NIR_19937	chr9	37321785	37321996	+	37321785	37321975	A3SS	ENSMUST00000156972.3	known	0.46	6	7	6	7	y	0.22	2	7	2	7	n	0.10	1	9	1	9	n	1.00	6	0	6	0	n	0.47	7	8	7	8	y	0.42	5	7	5	7	y	0.38	6	10	6	10	y	0.00	0	2	0	2	n	0.38	3	5	3	5	n	0.25	2	6	2	6	n	0.80	4	1	4	1	n	0.67	8	4	8	4	y	ENSMUSG00000032125.22	Robo4	chr9	protein_coding	roundabout guidance receptor 4
known_NIR_19938	chr9	37401129	37424910	+	37401129	37402680	3pMXE	ENSMUST00000211224.2	known	1.00	3	0	3	0	n	1.00	3	0	3	0	n	1.00	4	0	4	0	n	1.00	4	0	4	0	n	1.00	9	0	9	0	n	1.00	2	0	2	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	n	1.00	2	0	2	0	n	1.00	4	0	4	0	n	1.00	5	0	5	0	n	0.80	8	2	8	2	y	ENSMUSG00000042138.10	Msantd2	chr9	protein_coding	Myb/SANT-like DNA-binding domain containing 2
known_NIR_19939	chr9	37401129	37424910	+	37401129	37428513	A3SS	ENSMUST00000239459.2	known	1.00	3	0	3	0	n	1.00	3	0	3	0	n	1.00	4	0	4	0	n	1.00	4	0	4	0	n	0.82	9	2	9	2	y	1.00	2	0	2	0	n	0.50	1	1	1	1	n	1.00	3	0	3	0	n	1.00	2	0	2	0	n	0.80	4	1	4	1	n	0.83	5	1	5	1	n	1.00	8	0	8	0	n	ENSMUSG00000042138.10	Msantd2	chr9	protein_coding	Myb/SANT-like DNA-binding domain containing 2
known_NIR_19940	chr9	37401129	37424910	+	37401129;37402865	37402752;37424910	ES	ENSMUST00000209391.2	known	0.55	3	2.5	3	1;4	n	0.67	3	1.5	3	2;1	n	0.89	4	0.5	4	0;1	n	0.62	4	2.5	4	0;5	n	0.78	9	2.5	9	3;2	y	0.80	2	0.5	2	1;0	n	1.00	1	0.0	1	0;0	n	1.00	3	0.0	3	0;0	n	0.50	2	2.0	2	2;2	n	0.57	4	3.0	4	1;5	n	0.83	5	1.0	5	0;2	n	0.59	8	5.5	8	3;8	y	ENSMUSG00000042138.10	Msantd2	chr9	protein_coding	Myb/SANT-like DNA-binding domain containing 2
known_NIR_19941	chr9	37401129;37402865	37402680;37424910	+	37401129	37424910	cassetteExon	ENSMUST00000211792.2	known	0.40	2.0	3	0;4	3	n	0.14	0.5	3	0;1	3	n	0.11	0.5	4	0;1	4	n	0.38	2.5	4	0;5	4	n	0.10	1.0	9	0;2	9	n	0.00	0.0	2	0;0	2	n	0.00	0.0	1	0;0	1	n	0.00	0.0	3	0;0	3	n	0.33	1.0	2	0;2	2	n	0.38	2.5	4	0;5	4	n	0.17	1.0	5	0;2	5	n	0.38	5.0	8	2;8	8	y	ENSMUSG00000042138.10	Msantd2	chr9	protein_coding	Myb/SANT-like DNA-binding domain containing 2
known_NIR_19942	chr9	37442529	37442784	+	37439586	37442784	A5SS	ENSMUST00000002011.14	known	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	39	0	39	n	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.08	2	22	2	22	y	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	17	0	17	n	ENSMUSG00000001946.15	Esam	chr9	protein_coding	endothelial cell-specific adhesion molecule
known_NIR_19943	chr9	38629683	38633669	+	38629683;38630629	38630554;38633669	ES	ENSMUST00000001544.12	known	0.15	3	17.5	3	17;18	y	0.44	11	14.0	11	9;19	y	0.29	10	25.0	10	29;21	y	0.31	9	20.5	9	19;22	y	0.17	9	45.5	9	43;48	y	0.05	1	19.5	1	18;21	n	0.27	10	26.5	10	24;29	y	0.07	2	26.5	2	23;30	y	0.17	4	19.0	4	18;20	y	0.08	3	32.5	3	28;37	y	0.11	2	17.0	2	19;15	y	0.14	6	37.0	6	33;41	y	ENSMUSG00000023186.15	Vwa5a	chr9	protein_coding	von Willebrand factor A domain containing 5A
known_NIR_19944	chr9	38629683	38633669	+	38630629	38633669	5pMXE	ENSMUST00000129598.2	known	0.14	3	18	3	18	y	0.37	11	19	11	19	y	0.32	10	21	10	21	y	0.29	9	22	9	22	y	0.16	9	48	9	48	y	0.05	1	21	1	21	n	0.26	10	29	10	29	y	0.06	2	30	2	30	y	0.17	4	20	4	20	y	0.07	3	37	3	37	y	0.12	2	15	2	15	y	0.13	6	41	6	41	y	ENSMUSG00000023186.15	Vwa5a	chr9	protein_coding	von Willebrand factor A domain containing 5A
known_NIR_19945	chr9	38650016	38652394	+	38649912	38652394	A5SS	ENSMUST00000001544.12	known	0.00	0	63	0	63	n	0.04	3	74	3	74	y	0.00	0	38	0	38	n	0.00	0	69	0	69	n	0.00	0	92	0	92	n	0.00	0	20	0	20	n	0.00	0	86	0	86	n	0.00	0	36	0	36	n	0.02	1	45	1	45	n	0.00	0	83	0	83	n	0.00	0	56	0	56	n	0.00	0	73	0	73	n	ENSMUSG00000023186.15	Vwa5a	chr9	protein_coding	von Willebrand factor A domain containing 5A
known_NIR_19946	chr9	40712644	40713285	+	40712644	40713214	A3SS	ENSMUST00000015800.16	known	0.01	8	1501	8	1501	y	0.01	14	1045	14	1045	y	0.01	12	973	12	973	y	0.00	0	2013	0	2013	n	0.00	0	1962	0	1962	n	0.00	0	661	0	661	n	0.02	35	1698	35	1698	y	0.02	12	646	12	646	y	0.01	10	987	10	987	y	0.01	17	1397	17	1397	y	0.01	12	1110	12	1110	y	0.01	16	1477	16	1477	y	ENSMUSG00000015656.18	Hspa8	chr9	protein_coding	heat shock protein 8
known_NIR_19947	chr9	40712916	40713214	+	40712644	40713214	A5SS	ENSMUST00000015800.16	known	0.00	2	1501	2	1501	y	0.00	0	1045	0	1045	n	0.00	2	973	2	973	y	0.00	0	2013	0	2013	n	0.00	0	1962	0	1962	n	0.00	0	661	0	661	n	0.00	1	1698	1	1698	n	0.00	1	646	1	646	n	0.00	0	987	0	987	n	0.00	0	1397	0	1397	n	0.00	0	1110	0	1110	n	0.00	0	1477	0	1477	n	ENSMUSG00000015656.18	Hspa8	chr9	protein_coding	heat shock protein 8
known_NIR_19948	chr9	40713919	40714092	+	40713919	40714035	A3SS	ENSMUST00000015800.16	known	0.01	22	3360	22	3360	y	0.00	0	2574	0	2574	n	0.00	0	2041	0	2041	n	0.00	0	4154	0	4154	n	0.00	21	4236	21	4236	y	0.00	6	1359	6	1359	y	0.01	22	3663	22	3663	y	0.01	10	1413	10	1413	y	0.00	0	2373	0	2373	n	0.00	0	2991	0	2991	n	0.00	0	2380	0	2380	n	0.00	0	3452	0	3452	n	ENSMUSG00000015656.18	Hspa8	chr9	protein_coding	heat shock protein 8
known_NIR_19949	chr9	40715991	40721239	+	40715991	40716228	3pMXE	ENSMUST00000015800.16	known	0.00	0	7026	0	7026	n	0.00	0	6998	0	6998	n	0.00	0	3201	0	3201	n	0.00	0	5985	0	5985	n	0.00	3	6500	3	6500	y	0.00	0	2147	0	2147	n	0.00	0	7450	0	7450	n	0.00	0	2145	0	2145	n	0.00	0	4098	0	4098	n	0.00	0	5212	0	5212	n	0.00	0	4435	0	4435	n	0.00	0	5243	0	5243	n	ENSMUSG00000015656.18	Hspa8	chr9	protein_coding	heat shock protein 8
known_NIR_19950	chr9	42171195	42175502	-	42171195;42173427	42173347;42175502	ES	ENSMUST00000052725.15	known	0.00	0	253.0	0	305;201	n	0.00	0	134.0	0	177;91	n	0.00	0	356.0	0	434;278	n	0.00	1	339.5	1	437;242	n	0.00	0	499.5	0	637;362	n	0.01	2	240.0	2	315;165	y	0.00	1	354.5	1	437;272	n	0.00	1	246.5	1	295;198	n	0.00	0	398.0	0	532;264	n	0.00	0	590.5	0	774;407	n	0.00	0	421.0	0	548;294	n	0.00	0	589.5	0	761;418	n	ENSMUSG00000032018.15	Sc5d	chr9	protein_coding	sterol-C5-desaturase
known_NIR_19951	chr9	42173427	42175418	-	42173427	42175502	A5SS	ENSMUST00000052725.15	known	0.09	21	201	21	201	y	0.09	9	91	9	91	y	0.05	14	278	14	278	y	0.11	31	242	31	242	y	0.11	44	362	44	362	y	0.04	7	165	7	165	y	0.12	37	272	37	272	y	0.04	8	198	8	198	y	0.16	52	264	52	264	y	0.13	61	407	61	407	y	0.17	59	294	59	294	y	0.13	62	418	62	418	y	ENSMUSG00000032018.15	Sc5d	chr9	protein_coding	sterol-C5-desaturase
known_NIR_19952	chr9	42363058	42383362	-	42363058	42368854	5pMXE	ENSMUST00000125995.8	known	0.62	5	3	5	3	n	0.82	9	2	9	2	y	0.93	25	2	25	2	y	0.62	24	15	24	15	y	0.89	32	4	32	4	y	0.82	9	2	9	2	y	0.76	13	4	13	4	y	0.62	5	3	5	3	n	0.79	15	4	15	4	y	0.80	28	7	28	7	y	0.76	13	4	13	4	y	0.77	23	7	23	7	y	ENSMUSG00000037287.16	Tbcel	chr9	protein_coding	tubulin folding cofactor E-like
known_NIR_19953	chr9	42919404	42921475	-	42919407	42921475	A3SS	ENSMUST00000165665.9	known	0.21	6	22	6	22	y	0.64	7	4	7	4	y	0.46	37	44	37	44	y	0.42	25	35	25	35	y	0.38	29	48	29	48	y	0.53	19	17	19	17	y	0.32	17	36	17	36	y	0.48	22	24	22	24	y	0.19	6	26	6	26	y	0.34	22	43	22	43	y	0.50	14	14	14	14	y	0.31	18	40	18	40	y	ENSMUSG00000059495.15	Arhgef12	chr9	protein_coding	Rho guanine nucleotide exchange factor (GEF) 12
known_NIR_19954	chr9	42932079	42934107	-	42932079	42934111	A5SS	ENSMUST00000165665.9	known	0.18	3	14	3	14	y	0.07	1	13	1	13	n	0.03	2	71	2	71	y	0.05	2	37	2	37	y	0.10	6	52	6	52	y	0.24	9	28	9	28	y	0.06	2	29	2	29	y	0.05	2	39	2	39	y	0.08	2	24	2	24	y	0.08	4	45	4	45	y	0.10	3	27	3	27	y	0.09	4	43	4	43	y	ENSMUSG00000059495.15	Arhgef12	chr9	protein_coding	Rho guanine nucleotide exchange factor (GEF) 12
known_NIR_19955	chr9	42938591	42953887	-	42938591;42951892	42951836;42953887	ES	ENSMUST00000165665.9	known	0.61	24	15.5	24	14;17	y	0.52	14	13.0	14	12;14	y	0.56	44	34.0	44	39;29	y	0.55	36	29.0	36	30;28	y	0.58	49	36.0	49	39;33	y	0.60	23	15.5	23	16;15	y	0.60	53	35.0	53	33;37	y	0.63	36	21.5	36	20;23	y	0.47	23	25.5	23	26;25	y	0.51	48	46.5	48	47;46	y	0.49	23	23.5	23	30;17	y	0.49	39	40.0	39	37;43	y	ENSMUSG00000059495.15	Arhgef12	chr9	protein_coding	Rho guanine nucleotide exchange factor (GEF) 12
known_NIR_19956	chr9	42955583	43018459	-	42955583	43016474	5pMXE	ENSMUST00000165665.9	known	0.00	0	38	0	38	n	0.00	0	31	0	31	n	0.00	0	74	0	74	n	0.00	0	67	0	67	n	0.02	2	92	2	92	y	0.00	0	33	0	33	n	0.00	0	84	0	84	n	0.00	0	57	0	57	n	0.00	0	44	0	44	n	0.00	0	69	0	69	n	0.00	0	32	0	32	n	0.00	0	63	0	63	n	ENSMUSG00000059495.15	Arhgef12	chr9	protein_coding	Rho guanine nucleotide exchange factor (GEF) 12
known_NIR_19957	chr9	4302631	4308694	-	4302631;4303215	4303094;4308694	ES	ENSMUST00000051589.9	known	0.03	3	101.0	3	121;81	y	0.06	5	77.5	5	96;59	y	0.02	2	103.5	2	120;87	y	0.07	6	78.5	6	87;70	y	0.03	4	116.5	4	122;111	y	0.04	3	67.0	3	68;66	y	0.01	2	140.0	2	169;111	y	0.03	2	62.5	2	78;47	y	0.01	1	92.5	1	108;77	n	0.02	3	135.0	3	180;90	y	0.02	2	108.5	2	136;81	y	0.03	4	126.0	4	147;105	y	ENSMUSG00000025894.12	Aasdhppt	chr9	protein_coding	aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase
known_NIR_19958	chr9	4308919	4309288	-	4308919	4309254	A5SS	ENSMUST00000051589.9	known	0.15	12	66	12	66	y	0.08	4	46	4	46	y	0.15	16	89	16	89	y	0.13	10	68	10	68	y	0.19	16	69	16	69	y	0.21	8	30	8	30	y	0.20	24	98	24	98	y	0.14	7	42	7	42	y	0.12	8	61	8	61	y	0.13	12	80	12	80	y	0.12	8	61	8	61	y	0.09	7	67	7	67	y	ENSMUSG00000025894.12	Aasdhppt	chr9	protein_coding	aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase
known_NIR_19959	chr9	4309934;4313806	4313702;4316827	+	4309934	4316827	cassetteExon	ENSMUST00000049648.9	known	0.63	12.0	7	7;17	7	y	0.57	6.5	5	3;10	5	y	0.62	6.5	4	2;11	4	y	0.81	13.0	3	4;22	3	y	0.76	12.5	4	4;21	4	y	1.00	3.5	0	2;5	0	n	0.87	13.5	2	5;22	2	y	0.76	6.5	2	5;8	2	y	0.65	15.0	8	4;26	8	y	0.89	16.0	2	6;26	2	y	0.60	7.5	5	0;15	5	n	0.62	15.0	9	15;15	9	y	ENSMUSG00000025893.9	Kbtbd3	chr9	protein_coding	kelch repeat and BTB (POZ) domain containing 3
known_NIR_19960	chr9	43134136	43135173	-	43134136	43135194	A5SS	ENSMUST00000034512.7	known	0.01	14	1022	14	1022	y	0.01	8	997	8	997	y	0.01	11	822	11	822	y	0.01	6	1184	6	1184	y	0.01	11	1272	11	1272	y	0.02	7	429	7	429	y	0.01	18	1221	18	1221	y	0.01	8	528	8	528	y	0.01	9	1087	9	1087	y	0.01	12	1542	12	1542	y	0.01	14	1203	14	1203	y	0.01	6	1173	6	1173	y	ENSMUSG00000032014.7	Oaf	chr9	protein_coding	out at first homolog
known_NIR_19961	chr9	43996632	44000429	+	43987519	44000429	A5SS	ENSMUST00000034508.14	known	1.00	49	0	49	0	n	1.00	51	0	51	0	n	0.00	0	6	0	6	n	0.94	59	4	59	4	y	0.60	9	6	9	6	y	0.50	3	3	3	3	n	0.81	26	6	26	6	y	0.00	0	2	0	2	n	0.87	13	2	13	2	y	0.89	56	7	56	7	y	0.89	34	4	34	4	y	0.94	16	1	16	1	n	ENSMUSG00000032010.16	Usp2	chr9	protein_coding	ubiquitin specific peptidase 2
known_NIR_19962	chr9	43998562	44000429	+	43996632	44000429	A5SS	ENSMUST00000065461.9	known	0.00	0	49	0	49	n	0.02	1	51	1	51	n	-	-	-	-	-	-	0.03	2	59	2	59	y	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.04	1	26	1	26	n	-	-	-	-	-	-	0.00	0	13	0	13	n	0.00	0	56	0	56	n	0.00	0	34	0	34	n	0.06	1	16	1	16	n	ENSMUSG00000032010.16	Usp2	chr9	protein_coding	ubiquitin specific peptidase 2
known_NIR_19963	chr9	44052289	44053081	+	44052289;44052689	44052572;44053081	ES	ENSMUST00000034650.15	known	0.00	0	3.5	0	6;1	n	0.19	2	8.5	2	5;12	y	0.20	3	12.0	3	10;14	y	0.00	0	3.0	0	4;2	n	0.10	1	9.0	1	6;12	n	0.07	1	13.0	1	6;20	n	0.11	1	8.5	1	10;7	n	0.11	1	8.0	1	8;8	n	0.17	1	5.0	1	2;8	n	0.13	1	6.5	1	3;10	n	0.31	2	4.5	2	5;4	y	0.07	1	12.5	1	13;12	n	ENSMUSG00000032135.16	Mcam	chr9	protein_coding	melanoma cell adhesion molecule
known_NIR_19964	chr9	44177162	44179277	-	44177154	44179277	A3SS	ENSMUST00000169651.3	known	1.00	9	0	9	0	n	-	-	-	-	-	-	1.00	5	0	5	0	n	1.00	15	0	15	0	n	1.00	12	0	12	0	n	1.00	8	0	8	0	n	1.00	5	0	5	0	n	1.00	5	0	5	0	n	1.00	1	0	1	0	n	1.00	10	0	10	0	n	1.00	9	0	9	0	n	0.80	8	2	8	2	y	ENSMUSG00000032109.16	Nlrx1	chr9	protein_coding	NLR family member X1
known_NIR_19965	chr9	44209708	44209869	-	44209708	44210170	A5SS	ENSMUST00000216508.2	known	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.15	3	17	3	17	y	0.00	0	3	0	3	n	0.24	4	13	4	13	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.33	2	4	2	4	n	0.00	0	3	0	3	n	0.25	2	6	2	6	n	0.00	0	7	0	7	n	0.22	2	7	2	7	n	ENSMUSG00000032119.6	Hinfp	chr9	protein_coding	histone H4 transcription factor
known_NIR_19966	chr9	44225311	44225452	-	44225308	44225452	A3SS	ENSMUST00000065080.10	known	0.17	18	88	18	88	y	0.15	13	73	13	73	y	0.21	16	61	16	61	y	0.15	18	99	18	99	y	0.20	18	71	18	71	y	0.11	5	42	5	42	y	0.23	20	66	20	66	y	0.09	4	43	4	43	y	0.17	11	52	11	52	y	0.19	18	77	18	77	y	0.14	10	62	10	62	y	0.20	17	69	17	69	y	ENSMUSG00000032120.12	C2cd2l	chr9	protein_coding	C2 calcium-dependent domain containing 2-like
known_NIR_19967	chr9	44238116	44238443	+	44237492	44238443	A5SS	ENSMUST00000215248.2	known	0.43	3	4	3	4	n	0.00	0	1	0	1	n	1.00	3	0	3	0	n	0.56	5	4	5	4	n	1.00	6	0	6	0	n	1.00	2	0	2	0	n	0.42	5	7	5	7	y	1.00	2	0	2	0	n	0.38	3	5	3	5	n	0.70	7	3	7	3	y	0.25	1	3	1	3	n	0.17	1	5	1	5	n	ENSMUSG00000032123.6	Dpagt1	chr9	protein_coding	dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)
known_NIR_19968	chr9	44238502	44239250	+	44238502;44238969	44238849;44239250	ES	ENSMUST00000215248.2	known	0.05	3	55.0	3	58;52	y	0.12	7	51.5	7	55;48	y	0.01	2	165.5	2	172;159	y	0.09	7	68.0	7	68;68	y	0.04	5	129.0	5	146;112	y	0.01	1	97.0	1	97;97	n	0.11	10	78.0	10	84;72	y	0.00	0	108.0	0	119;97	n	0.03	2	58.0	2	69;47	y	0.05	5	104.0	5	110;98	y	0.03	2	68.0	2	63;73	y	0.07	8	100.0	8	106;94	y	ENSMUSG00000032123.6	Dpagt1	chr9	protein_coding	dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)
known_NIR_19969	chr9	44267147	44267592	-	44267147	44267525	A5SS	ENSMUST00000034644.10	known	0.17	6	30	6	30	y	0.35	7	13	7	13	y	0.03	2	60	2	60	y	0.05	2	39	2	39	y	0.12	6	44	6	44	y	0.11	3	25	3	25	y	0.14	6	36	6	36	y	0.12	3	22	3	22	y	0.24	6	19	6	19	y	0.20	11	45	11	45	y	0.09	4	40	4	40	y	0.16	8	42	8	42	y	ENSMUSG00000032127.10	Vps11	chr9	protein_coding	VPS11, CORVET/HOPS core subunit
known_NIR_19970	chr9	44290973	44291810	+	44290892	44291810	A5SS	ENSMUST00000066601.13	known	0.36	10	18	10	18	y	0.26	5	14	5	14	y	0.21	19	72	19	72	y	0.29	13	32	13	32	y	0.30	21	49	21	49	y	0.22	13	46	13	46	y	0.42	18	25	18	25	y	0.35	18	33	18	33	y	0.16	4	21	4	21	y	0.36	8	14	8	14	y	0.21	6	22	6	22	y	0.29	10	25	10	25	y	ENSMUSG00000032115.15	Hyou1	chr9	protein_coding	hypoxia up-regulated 1
known_NIR_19971	chr9	44290973	44291810	+	44291038	44291810	A5SS	ENSMUST00000161318.8	known	0.33	10	20	10	20	y	0.26	5	14	5	14	y	0.21	19	70	19	70	y	0.39	13	20	13	20	y	0.27	21	57	21	57	y	0.18	13	60	13	60	y	0.43	18	24	18	24	y	0.23	18	59	18	59	y	0.13	4	26	4	26	y	0.24	8	26	8	26	y	0.23	6	20	6	20	y	0.33	10	20	10	20	y	ENSMUSG00000032115.15	Hyou1	chr9	protein_coding	hypoxia up-regulated 1
known_NIR_19972	chr9	44291038	44291810	+	44290892	44291810	A5SS	ENSMUST00000066601.13	known	0.53	20	18	20	18	y	0.50	14	14	14	14	y	0.49	70	72	70	72	y	0.38	20	32	20	32	y	0.54	57	49	57	49	y	0.57	60	46	60	46	y	0.49	24	25	24	25	y	0.64	59	33	59	33	y	0.55	26	21	26	21	y	0.65	26	14	26	14	y	0.48	20	22	20	22	y	0.44	20	25	20	25	y	ENSMUSG00000032115.15	Hyou1	chr9	protein_coding	hypoxia up-regulated 1
known_NIR_19973	chr9	44291234	44291810	+	44290892	44291810	A5SS	ENSMUST00000066601.13	known	0.70	43	18	43	18	y	0.75	43	14	43	14	y	0.75	220	72	220	72	y	0.68	69	32	69	32	y	0.77	168	49	168	49	y	0.73	125	46	125	46	y	0.68	54	25	54	25	y	0.81	145	33	145	33	y	0.71	51	21	51	21	y	0.77	46	14	46	14	y	0.73	59	22	59	22	y	0.70	58	25	58	25	y	ENSMUSG00000032115.15	Hyou1	chr9	protein_coding	hypoxia up-regulated 1
known_NIR_19974	chr9	44291234	44291810	+	44290973	44291810	A5SS	ENSMUST00000217019.2	known	0.81	43	10	43	10	y	0.90	43	5	43	5	y	0.92	220	19	220	19	y	0.84	69	13	69	13	y	0.89	168	21	168	21	y	0.91	125	13	125	13	y	0.75	54	18	54	18	y	0.89	145	18	145	18	y	0.93	51	4	51	4	y	0.85	46	8	46	8	y	0.91	59	6	59	6	y	0.85	58	10	58	10	y	ENSMUSG00000032115.15	Hyou1	chr9	protein_coding	hypoxia up-regulated 1
known_NIR_19975	chr9	44291234	44291810	+	44291038	44291810	A5SS	ENSMUST00000161318.8	known	0.68	43	20	43	20	y	0.75	43	14	43	14	y	0.76	220	70	220	70	y	0.78	69	20	69	20	y	0.75	168	57	168	57	y	0.68	125	60	125	60	y	0.69	54	24	54	24	y	0.71	145	59	145	59	y	0.66	51	26	51	26	y	0.64	46	26	46	26	y	0.75	59	20	59	20	y	0.74	58	20	58	20	y	ENSMUSG00000032115.15	Hyou1	chr9	protein_coding	hypoxia up-regulated 1
known_NIR_19976	chr9	44296568	44296864	+	44296602	44296864	A5SS	ENSMUST00000066601.13	known	0.04	9	244	9	244	y	0.07	18	230	18	230	y	0.04	31	764	31	764	y	0.00	0	280	0	280	n	0.04	24	538	24	538	y	0.04	22	537	22	537	y	0.03	8	270	8	270	y	0.03	17	473	17	473	y	0.06	12	198	12	198	y	0.03	7	245	7	245	y	0.04	7	183	7	183	y	0.00	0	236	0	236	n	ENSMUSG00000032115.15	Hyou1	chr9	protein_coding	hypoxia up-regulated 1
known_NIR_19977	chr9	44308743	44309565	+	44308770	44309565	A5SS	ENSMUST00000215121.2	known	0.20	3	12	3	12	y	0.33	2	4	2	4	n	0.29	4	10	4	10	y	0.31	5	11	5	11	y	0.32	8	17	8	17	y	0.18	2	9	2	9	y	0.17	3	15	3	15	y	0.33	3	6	3	6	n	0.27	3	8	3	8	y	0.11	3	24	3	24	y	0.15	2	11	2	11	y	0.44	8	10	8	10	y	ENSMUSG00000032114.10	Slc37a4	chr9	protein_coding	solute carrier family 37 (glucose-6-phosphate transporter), member 4
known_NIR_19978	chr9	44309918	44310515	+	44309918	44310546	A3SS	ENSMUST00000215420.2	known	0.01	2	250	2	250	y	0.02	5	213	5	213	y	0.07	7	92	7	92	y	0.01	3	310	3	310	y	0.01	3	312	3	312	y	0.02	2	86	2	86	y	0.02	4	246	4	246	y	0.03	5	146	5	146	y	0.03	5	188	5	188	y	0.02	5	255	5	255	y	0.01	2	201	2	201	y	0.03	7	209	7	209	y	ENSMUSG00000032114.10	Slc37a4	chr9	protein_coding	solute carrier family 37 (glucose-6-phosphate transporter), member 4
known_NIR_19979	chr9	44312831;44313066	44313004;44313370	+	44312831	44313370	cassetteExon	ENSMUST00000215420.2	known	0.00	1.0	394	2;0	394	n	0.01	2.5	385	4;1	385	n	0.00	0.0	134	0;0	134	n	0.00	1.0	483	2;0	483	n	0.01	2.0	381	3;1	381	n	0.00	0.0	142	0;0	142	n	0.02	6.5	409	9;4	409	y	0.00	0.0	176	0;0	176	n	0.00	0.5	270	0;1	270	n	0.00	1.5	390	3;0	390	n	0.01	2.5	301	4;1	301	n	0.01	2.5	314	5;0	314	n	ENSMUSG00000032114.10	Slc37a4	chr9	protein_coding	solute carrier family 37 (glucose-6-phosphate transporter), member 4
known_NIR_19980	chr9	44315757	44318101	-	44315757;44316643	44316540;44318101	ES	ENSMUST00000213747.2	known	0.05	5	104.0	5	101;107	y	0.03	3	97.5	3	110;85	y	0.01	2	166.0	2	145;187	y	0.03	3	86.0	3	85;87	y	0.02	3	121.0	3	121;121	y	0.04	3	78.0	3	70;86	y	0.01	2	136.0	2	136;136	y	0.04	3	66.0	3	68;64	y	0.01	1	91.5	1	97;86	n	0.00	0	142.5	0	145;140	n	0.01	1	104.0	1	104;104	n	0.03	4	115.5	4	103;128	y	ENSMUSG00000032112.11	Trappc4	chr9	protein_coding	trafficking protein particle complex 4
known_NIR_19981	chr9	44315757	44318101	-	44316643	44318101	3pMXE	ENSMUST00000215072.2	known	0.04	5	107	5	107	y	0.03	3	85	3	85	y	0.01	2	187	2	187	y	0.03	3	87	3	87	y	0.02	3	121	3	121	y	0.03	3	86	3	86	y	0.01	2	136	2	136	y	0.04	3	64	3	64	y	0.01	1	86	1	86	n	0.00	0	140	0	140	n	0.01	1	104	1	104	n	0.03	4	128	4	128	y	ENSMUSG00000032112.11	Trappc4	chr9	protein_coding	trafficking protein particle complex 4
known_NIR_19982	chr9	44324340	44324434	-	44324319	44324434	A3SS	ENSMUST00000053286.9	known	0.05	2	35	2	35	y	0.25	11	33	11	33	y	0.30	7	16	7	16	y	0.06	2	29	2	29	y	0.20	10	40	10	40	y	0.00	0	12	0	12	n	0.10	3	27	3	27	y	0.25	5	15	5	15	y	0.05	1	20	1	20	n	0.13	5	33	5	33	y	0.00	0	17	0	17	n	0.09	4	40	4	40	y	ENSMUSG00000043923.9	Ccdc84	chr9	protein_coding	coiled-coil domain containing 84
known_NIR_19983	chr9	44324363	44324434	-	44324319	44324434	A3SS	ENSMUST00000053286.9	known	0.03	1	35	1	35	n	0.03	1	33	1	33	n	0.20	4	16	4	16	y	0.00	0	29	0	29	n	0.05	2	40	2	40	y	0.00	0	12	0	12	n	0.00	0	27	0	27	n	0.00	0	15	0	15	n	0.00	0	20	0	20	n	0.00	0	33	0	33	n	0.00	0	17	0	17	n	0.00	0	40	0	40	n	ENSMUSG00000043923.9	Ccdc84	chr9	protein_coding	coiled-coil domain containing 84
known_NIR_19984	chr9	44324363	44324434	-	44324340	44324434	A3SS	ENSMUST00000214494.2	known	0.33	1	2	1	2	n	0.08	1	11	1	11	n	0.36	4	7	4	7	y	0.00	0	2	0	2	n	0.17	2	10	2	10	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000043923.9	Ccdc84	chr9	protein_coding	coiled-coil domain containing 84
known_NIR_19985	chr9	44324498	44324740	-	44324498	44324768	A5SS	ENSMUST00000053286.9	known	0.48	13	14	13	14	y	0.26	7	20	7	20	y	0.65	17	9	17	9	y	0.30	6	14	6	14	y	0.53	20	18	20	18	y	0.57	4	3	4	3	n	0.30	9	21	9	21	y	0.50	13	13	13	13	y	0.43	6	8	6	8	y	0.22	6	21	6	21	y	0.54	7	6	7	6	y	0.31	11	24	11	24	y	ENSMUSG00000043923.9	Ccdc84	chr9	protein_coding	coiled-coil domain containing 84
known_NIR_19986	chr9	44394783	44400952	+	44394783	44412042	A3SS	ENSMUST00000220303.2	known	0.70	7	3	7	3	y	1.00	9	0	9	0	n	0.71	22	9	22	9	y	0.87	13	2	13	2	y	0.91	32	3	32	3	y	0.77	10	3	10	3	y	1.00	14	0	14	0	n	0.67	12	6	12	6	y	1.00	8	0	8	0	n	0.88	21	3	21	3	y	1.00	13	0	13	0	n	0.88	15	2	15	2	y	ENSMUSG00000063382.7	Bcl9l	chr9	protein_coding	B cell CLL/lymphoma 9-like
known_NIR_19987	chr9	44398583	44400952	+	44394783	44400952	A5SS	ENSMUST00000217898.2	known	0.12	1	7	1	7	n	0.00	0	9	0	9	n	0.00	0	22	0	22	n	0.07	1	13	1	13	n	0.06	2	32	2	32	y	0.09	1	10	1	10	n	0.07	1	14	1	14	n	0.25	4	12	4	12	y	0.00	0	8	0	8	n	0.16	4	21	4	21	y	0.00	0	13	0	13	n	0.00	0	15	0	15	n	ENSMUSG00000063382.7	Bcl9l	chr9	protein_coding	B cell CLL/lymphoma 9-like
known_NIR_19988	chr9	44410846	44412042	+	44394783	44412042	A5SS	ENSMUST00000220303.2	known	0.86	19	3	19	3	y	1.00	10	0	10	0	n	0.64	16	9	16	9	y	0.89	17	2	17	2	y	0.92	35	3	35	3	y	0.86	19	3	19	3	y	1.00	21	0	21	0	n	0.83	29	6	29	6	y	1.00	14	0	14	0	n	0.90	28	3	28	3	y	1.00	20	0	20	0	n	0.83	10	2	10	2	y	ENSMUSG00000063382.7	Bcl9l	chr9	protein_coding	B cell CLL/lymphoma 9-like
known_NIR_19989	chr9	44516249	44518420	+	44516281	44518420	A5SS	ENSMUST00000170489.2	known	0.56	5	4	5	4	n	0.64	9	5	9	5	y	0.71	15	6	15	6	y	0.88	15	2	15	2	y	0.76	28	9	28	9	y	0.67	14	7	14	7	y	0.85	11	2	11	2	y	0.81	30	7	30	7	y	0.81	13	3	13	3	y	0.76	16	5	16	5	y	0.61	11	7	11	7	y	0.69	22	10	22	10	y	ENSMUSG00000032097.11	Ddx6	chr9	protein_coding	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
known_NIR_19990	chr9	44582570	44583337	-	44582570	44583439	A5SS	ENSMUST00000213859.2	known	0.03	1	39	1	39	n	0.00	0	30	0	30	n	0.12	8	56	8	56	y	0.03	1	39	1	39	n	0.01	1	116	1	116	n	0.04	3	75	3	75	y	0.03	1	37	1	37	n	0.07	7	89	7	89	y	0.05	1	20	1	20	n	0.03	1	29	1	29	n	0.00	0	54	0	54	n	0.18	4	18	4	18	y	ENSMUSG00000110755.2	BC049987	chr9	lncRNA	cDNA sequence BC049987
known_NIR_19991	chr9	44592890	44594166	+	44592890;44594029	44593929;44594166	ES	ENSMUST00000034609.11	known	0.15	1	5.5	1	7;4	n	0.00	0	4.0	0	6;2	n	0.08	1	11.0	1	10;12	n	0.23	4	13.5	4	15;12	y	0.22	3	10.5	3	8;13	y	0.14	3	18.5	3	16;21	y	0.21	3	11.0	3	4;18	y	0.19	2	8.5	2	11;6	y	0.00	0	4.0	0	0;8	n	0.32	3	6.5	3	9;4	y	0.20	1	4.0	1	5;3	n	0.25	3	9.0	3	8;10	y	ENSMUSG00000032098.14	Treh	chr9	protein_coding	trehalase (brush-border membrane glycoprotein)
known_NIR_19992	chr9	44607480	44609016	-	44607480	44609049	A5SS	ENSMUST00000147495.8	known	0.00	0	5	0	5	n	0.67	2	1	2	1	n	0.60	3	2	3	2	n	0.00	0	5	0	5	n	0.00	0	15	0	15	n	0.25	1	3	1	3	n	0.29	2	5	2	5	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.00	0	7	0	7	n	0.18	2	9	2	9	y	ENSMUSG00000048537.17	Phldb1	chr9	protein_coding	pleckstrin homology like domain, family B, member 1
known_NIR_19993	chr9	44684584	44684985	+	44684470	44684985	A5SS	ENSMUST00000154090.8	known	0.01	1	75	1	75	n	0.02	1	60	1	60	n	0.02	1	60	1	60	n	0.02	1	61	1	61	n	0.01	1	71	1	71	n	0.00	0	51	0	51	n	0.00	0	78	0	78	n	0.00	0	48	0	48	n	0.00	0	54	0	54	n	0.05	6	105	6	105	y	0.00	0	64	0	64	n	0.00	0	84	0	84	n	ENSMUSG00000002031.14	Ift46	chr9	protein_coding	intraflagellar transport 46
known_NIR_19994	chr9	44685081	44689859	+	44685081	44685480	3pMXE	ENSMUST00000124534.8	known	0.96	76	3	76	3	y	1.00	57	0	57	0	n	0.94	91	6	91	6	y	0.96	79	3	79	3	y	0.98	102	2	102	2	y	0.98	58	1	58	1	n	0.98	91	2	91	2	y	0.96	50	2	50	2	y	0.97	66	2	66	2	y	0.98	130	3	130	3	y	1.00	81	0	81	0	n	0.97	117	3	117	3	y	ENSMUSG00000002031.14	Ift46	chr9	protein_coding	intraflagellar transport 46
known_NIR_19995	chr9	44685081	44689859	+	44687734	44689859	5pMXE	ENSMUST00000118186.2	known	1.00	76	0	76	0	n	1.00	57	0	57	0	n	0.96	91	4	91	4	y	0.98	79	2	79	2	y	1.00	102	0	102	0	n	0.98	58	1	58	1	n	0.96	91	4	91	4	y	1.00	50	0	50	0	n	1.00	66	0	66	0	n	0.98	130	3	130	3	y	1.00	81	0	81	0	n	1.00	117	0	117	0	n	ENSMUSG00000002031.14	Ift46	chr9	protein_coding	intraflagellar transport 46
known_NIR_19996	chr9	44685081	44689891	+	44685081	44689859	A3SS	ENSMUST00000154090.8	known	0.00	0	76	0	76	n	0.02	1	57	1	57	n	0.01	1	91	1	91	n	0.00	0	79	0	79	n	0.00	0	102	0	102	n	0.03	2	58	2	58	y	0.01	1	91	1	91	n	0.00	0	50	0	50	n	0.00	0	66	0	66	n	0.00	0	130	0	130	n	0.00	0	81	0	81	n	0.00	0	117	0	117	n	ENSMUSG00000002031.14	Ift46	chr9	protein_coding	intraflagellar transport 46
known_NIR_19997	chr9	44685081;44685528	44685480;44689859	+	44685081	44689859	cassetteExon	ENSMUST00000154090.8	known	0.03	2.5	76	3;2	76	y	0.03	1.5	57	0;3	57	n	0.03	3.0	91	6;0	91	n	0.04	3.0	79	3;3	79	y	0.02	2.0	102	2;2	102	y	0.02	1.0	58	1;1	58	n	0.01	1.0	91	2;0	91	n	0.04	2.0	50	2;2	50	y	0.05	3.5	66	2;5	66	y	0.02	2.0	130	3;1	130	n	0.01	1.0	81	0;2	81	n	0.02	2.0	117	3;1	117	n	ENSMUSG00000002031.14	Ift46	chr9	protein_coding	intraflagellar transport 46
known_NIR_19998	chr9	44698201	44698456	+	44698201	44700864	A3SS	ENSMUST00000002099.11	known	0.00	0	83	0	83	n	0.00	0	113	0	113	n	0.00	0	107	0	107	n	0.01	1	110	1	110	n	0.00	0	102	0	102	n	0.00	0	54	0	54	n	0.01	2	140	2	140	y	0.00	0	62	0	62	n	0.00	0	72	0	72	n	0.01	1	130	1	130	n	0.00	0	103	0	103	n	0.00	0	141	0	141	n	ENSMUSG00000002031.14	Ift46	chr9	protein_coding	intraflagellar transport 46
known_NIR_19999	chr9	44707009	44707621	-	44707009;44707424	44707293;44707621	ES	ENSMUST00000213203.2	known	0.03	2	73.0	2	86;60	y	0.02	1	50.5	1	54;47	n	0.10	1	9.5	1	11;8	n	0.04	4	86.0	4	103;69	y	0.12	10	76.0	10	82;70	y	0.19	2	8.5	2	11;6	y	0.07	4	52.5	4	62;43	y	0.08	3	34.5	3	38;31	y	0.05	3	52.0	3	64;40	y	0.07	8	108.0	8	132;84	y	0.03	2	68.5	2	79;58	y	0.02	2	101.0	2	128;74	y	ENSMUSG00000002032.18	Tmem25	chr9	protein_coding	transmembrane protein 25
known_NIR_20000	chr9	44709760	44709961	-	44709729	44709961	A3SS	ENSMUST00000213203.2	known	0.16	9	49	9	49	y	0.14	6	37	6	37	y	0.00	0	7	0	7	n	0.15	11	61	11	61	y	0.14	8	50	8	50	y	0.50	7	7	7	7	y	0.09	4	39	4	39	y	0.09	3	29	3	29	y	0.18	9	41	9	41	y	0.14	13	77	13	77	y	0.06	3	44	3	44	y	0.14	9	55	9	55	y	ENSMUSG00000002032.18	Tmem25	chr9	protein_coding	transmembrane protein 25
known_NIR_20001	chr9	44710054	44710379	-	44710054	44710478	A5SS	ENSMUST00000002100.8	known	0.20	1	4	1	4	n	-	-	-	-	-	-	0.67	2	1	2	1	n	0.00	0	5	0	5	n	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	4	0	4	0	n	0.00	0	1	0	1	n	1.00	2	0	2	0	n	0.50	5	5	5	5	y	0.40	2	3	2	3	n	1.00	3	0	3	0	n	ENSMUSG00000002032.18	Tmem25	chr9	protein_coding	transmembrane protein 25
known_NIR_20002	chr9	44824764	44831908	-	44824764	44825949	5pMXE	ENSMUST00000213999.2	known	0.01	20	1896	20	1896	y	0.01	26	2043	26	2043	y	0.01	28	1898	28	1898	y	0.01	17	1785	17	1785	y	0.01	31	2195	31	2195	y	0.01	16	1060	16	1060	y	0.01	36	2546	36	2546	y	0.01	16	1098	16	1098	y	0.01	16	1797	16	1797	y	0.01	33	2612	33	2612	y	0.02	34	2184	34	2184	y	0.01	32	2302	32	2302	y	ENSMUSG00000038717.10	Atp5l	chr9	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G
known_NIR_20003	chr9	44824764	44831908	-	44824764;44826109	44825949;44831908	ES	ENSMUST00000043675.9	known	0.01	20	1623.0	20	1896;1350	y	0.01	26	1741.5	26	2043;1440	y	0.02	28	1631.0	28	1898;1364	y	0.01	17	1505.5	17	1785;1226	y	0.02	31	1883.5	31	2195;1572	y	0.02	16	951.0	16	1060;842	y	0.02	36	2234.0	36	2546;1922	y	0.02	16	1011.0	16	1098;924	y	0.01	16	1573.5	16	1797;1350	y	0.01	33	2304.0	33	2612;1996	y	0.02	34	1917.0	34	2184;1650	y	0.02	32	1994.5	32	2302;1687	y	ENSMUSG00000038717.10	Atp5l	chr9	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G
known_NIR_20004	chr9	44852584	44856103	-	44852584;44854168	44853864;44856103	ES	ENSMUST00000117506.9	known	0.00	0	49.5	0	47;52	n	0.00	0	34.0	0	38;30	n	0.02	2	84.0	2	91;77	y	0.01	1	86.5	1	96;77	n	0.00	0	93.5	0	108;79	n	0.00	0	54.5	0	49;60	n	0.01	1	78.5	1	75;82	n	0.00	0	60.0	0	62;58	n	0.00	0	49.0	0	45;53	n	0.00	0	78.5	0	88;69	n	0.00	0	45.5	0	43;48	n	0.01	1	74.5	1	78;71	n	ENSMUSG00000059890.17	Ube4a	chr9	protein_coding	ubiquitination factor E4A
known_NIR_20005	chr9	44864470	44871277	-	44864413	44871277	A3SS	ENSMUST00000117506.9	known	0.75	40	13	40	13	y	0.91	21	2	21	2	y	0.82	59	13	59	13	y	0.90	84	9	84	9	y	0.77	70	21	70	21	y	0.83	35	7	35	7	y	0.70	44	19	44	19	y	0.77	40	12	40	12	y	0.81	35	8	35	8	y	0.76	55	17	55	17	y	0.88	28	4	28	4	y	0.78	47	13	47	13	y	ENSMUSG00000059890.17	Ube4a	chr9	protein_coding	ubiquitination factor E4A
known_NIR_20006	chr9	44864470	44871277	-	44868023	44871277	3pMXE	ENSMUST00000155400.3	known	0.87	40	6	40	6	y	0.95	21	1	21	1	n	1.00	59	0	59	0	n	0.98	84	2	84	2	y	0.99	70	1	70	1	n	0.95	35	2	35	2	y	1.00	44	0	44	0	n	1.00	40	0	40	0	n	0.97	35	1	35	1	n	0.95	55	3	55	3	y	0.93	28	2	28	2	y	1.00	47	0	47	0	n	ENSMUSG00000059890.17	Ube4a	chr9	protein_coding	ubiquitination factor E4A
known_NIR_20007	chr9	44864470;44868023	44867840;44871277	-	44864470	44871277	cassetteExon	ENSMUST00000117549.8	known	0.07	3.0	40	0;6	40	n	0.02	0.5	21	0;1	21	n	0.02	1.5	59	3;0	59	n	0.02	1.5	84	1;2	84	n	0.01	0.5	70	0;1	70	n	0.03	1.0	35	0;2	35	n	0.00	0.0	44	0;0	44	n	0.00	0.0	40	0;0	40	n	0.01	0.5	35	0;1	35	n	0.04	2.0	55	1;3	55	n	0.07	2.0	28	2;2	28	y	0.00	0.0	47	0;0	47	n	ENSMUSG00000059890.17	Ube4a	chr9	protein_coding	ubiquitination factor E4A
known_NIR_20008	chr9	44868023	44871277	-	44864413	44871277	A3SS	ENSMUST00000117506.9	known	0.32	6	13	6	13	y	0.33	1	2	1	2	n	0.00	0	13	0	13	n	0.18	2	9	2	9	y	0.05	1	21	1	21	n	0.22	2	7	2	7	n	0.00	0	19	0	19	n	0.00	0	12	0	12	n	0.11	1	8	1	8	n	0.15	3	17	3	17	y	0.33	2	4	2	4	n	0.00	0	13	0	13	n	ENSMUSG00000059890.17	Ube4a	chr9	protein_coding	ubiquitination factor E4A
known_NIR_20009	chr9	44871425	44874635	-	44871437	44874635	A3SS	ENSMUST00000117506.9	known	0.05	3	52	3	52	y	0.05	2	38	2	38	y	0.03	2	69	2	69	y	0.02	2	79	2	79	y	0.01	1	80	1	80	n	0.07	3	37	3	37	y	0.06	3	46	3	46	y	0.00	0	76	0	76	n	0.00	0	40	0	40	n	0.05	4	70	4	70	y	0.03	1	31	1	31	n	0.08	5	61	5	61	y	ENSMUSG00000059890.17	Ube4a	chr9	protein_coding	ubiquitination factor E4A
known_NIR_20010	chr9	44871437	44874662	-	44871437	44874635	A5SS	ENSMUST00000117506.9	known	0.00	0	52	0	52	n	0.00	0	38	0	38	n	0.00	0	69	0	69	n	0.00	0	79	0	79	n	0.02	2	80	2	80	y	0.00	0	37	0	37	n	0.08	4	46	4	46	y	0.00	0	76	0	76	n	0.02	1	40	1	40	n	0.03	2	70	2	70	y	0.00	0	31	0	31	n	0.02	1	61	1	61	n	ENSMUSG00000059890.17	Ube4a	chr9	protein_coding	ubiquitination factor E4A
known_NIR_20011	chr9	44871437	44876783	-	44871437	44874635	A5SS&ES	ENSMUST00000213890.2	known	0.09	5	52	5	52	y	0.00	0	38	0	38	n	0.07	5	69	5	69	y	0.02	2	79	2	79	y	0.10	9	80	9	80	y	0.07	3	37	3	37	y	0.02	1	46	1	46	n	0.04	3	76	3	76	y	0.00	0	40	0	40	n	0.03	2	70	2	70	y	0.00	0	31	0	31	n	0.08	5	61	5	61	y	ENSMUSG00000059890.17	Ube4a	chr9	protein_coding	ubiquitination factor E4A
known_NIR_20012	chr9	44871437	44876783	-	44871437;44874730	44874635;44876783	ES	ENSMUST00000117506.9	known	0.12	5	36.5	5	52;21	y	0.00	0	25.5	0	38;13	n	0.09	5	52.5	5	69;36	y	0.03	2	57.5	2	79;36	y	0.13	9	59.5	9	80;39	y	0.09	3	30.5	3	37;24	y	0.03	1	35.5	1	46;25	n	0.05	3	61.0	3	76;46	y	0.00	0	31.5	0	40;23	n	0.04	2	53.0	2	70;36	y	0.00	0	21.5	0	31;12	n	0.10	5	46.0	5	61;31	y	ENSMUSG00000059890.17	Ube4a	chr9	protein_coding	ubiquitination factor E4A
known_NIR_20013	chr9	44871437	44876783	-	44874730	44876783	A3SS&ES	ENSMUST00000125642.8	known	0.19	5	21	5	21	y	0.00	0	13	0	13	n	0.12	5	36	5	36	y	0.05	2	36	2	36	y	0.19	9	39	9	39	y	0.11	3	24	3	24	y	0.04	1	25	1	25	n	0.06	3	46	3	46	y	0.00	0	23	0	23	n	0.05	2	36	2	36	y	0.00	0	12	0	12	n	0.14	5	31	5	31	y	ENSMUSG00000059890.17	Ube4a	chr9	protein_coding	ubiquitination factor E4A
known_NIR_20014	chr9	44871437;44874730	44874662;44876783	-	44871437	44876783	cassetteExon	ENSMUST00000117549.8	known	0.68	10.5	5	0;21	5	n	1.00	6.5	0	0;13	0	n	0.78	18.0	5	0;36	5	n	0.90	18.0	2	0;36	2	n	0.69	20.5	9	2;39	9	y	0.80	12.0	3	0;24	3	n	0.94	14.5	1	4;25	1	n	0.88	23.0	3	0;46	3	n	1.00	12.0	0	1;23	0	n	0.90	19.0	2	2;36	2	y	1.00	6.0	0	0;12	0	n	0.76	16.0	5	1;31	5	n	ENSMUSG00000059890.17	Ube4a	chr9	protein_coding	ubiquitination factor E4A
known_NIR_20015	chr9	44874730	44876771	-	44874730	44876783	A5SS	ENSMUST00000117506.9	known	0.12	3	21	3	21	y	0.13	2	13	2	13	y	0.05	2	36	2	36	y	0.10	4	36	4	36	y	0.05	2	39	2	39	y	0.04	1	24	1	24	n	0.07	2	25	2	25	y	0.06	3	46	3	46	y	0.15	4	23	4	23	y	0.05	2	36	2	36	y	0.20	3	12	3	12	y	0.09	3	31	3	31	y	ENSMUSG00000059890.17	Ube4a	chr9	protein_coding	ubiquitination factor E4A
known_NIR_20016	chr9	44951880	44953336	+	44951880	44954998	A3SS	ENSMUST00000217097.2	known	0.30	3	7	3	7	y	0.56	5	4	5	4	n	0.57	8	6	8	6	y	0.53	9	8	9	8	y	0.57	17	13	17	13	y	0.31	4	9	4	9	y	0.18	3	14	3	14	y	0.56	15	12	15	12	y	0.17	1	5	1	5	n	0.44	16	20	16	20	y	0.45	9	11	9	11	y	0.08	1	12	1	12	n	ENSMUSG00000032092.6	Mpzl2	chr9	protein_coding	myelin protein zero-like 2
known_NIR_20017	chr9	44954092	44954998	+	44951880	44954998	A5SS	ENSMUST00000217097.2	known	0.90	65	7	65	7	y	0.94	58	4	58	4	y	0.90	53	6	53	6	y	0.95	139	8	139	8	y	0.89	102	13	102	13	y	0.80	37	9	37	9	y	0.85	81	14	81	14	y	0.85	68	12	68	12	y	0.90	46	5	46	5	y	0.82	91	20	91	20	y	0.85	64	11	64	11	y	0.82	56	12	56	12	y	ENSMUSG00000032092.6	Mpzl2	chr9	protein_coding	myelin protein zero-like 2
known_NIR_20018	chr9	45301345	45301935	+	45301345	45301932	A3SS	ENSMUST00000085939.8	known	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.53	9	8	9	8	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000066705.8	Fxyd6	chr9	protein_coding	FXYD domain-containing ion transport regulator 6
known_NIR_20019	chr9	45686202	45686490	-	45686205	45686490	A3SS	ENSMUST00000117194.8	known	0.00	0	15	0	15	n	0.00	0	21	0	21	n	0.05	1	18	1	18	n	0.06	1	16	1	16	n	0.00	0	24	0	24	n	0.00	0	13	0	13	n	0.03	1	28	1	28	n	0.00	0	19	0	19	n	0.22	2	7	2	7	n	0.08	2	23	2	23	y	0.00	0	9	0	9	n	0.04	1	27	1	27	n	ENSMUSG00000043987.19	Cep164	chr9	protein_coding	centrosomal protein 164
known_NIR_20020	chr9	45691134	45693250	-	45691134	45698724	A5SS	ENSMUST00000217554.2	known	0.38	5	8	5	8	y	0.29	2	5	2	5	n	0.43	6	8	6	8	y	0.75	6	2	6	2	n	0.75	9	3	9	3	y	0.00	0	6	0	6	n	0.27	3	8	3	8	y	0.50	6	6	6	6	y	0.62	5	3	5	3	n	0.53	9	8	9	8	y	0.38	6	10	6	10	y	0.50	8	8	8	8	y	ENSMUSG00000043987.19	Cep164	chr9	protein_coding	centrosomal protein 164
known_NIR_20021	chr9	45691134	45698724	-	45691134;45697219	45697076;45698724	ES	ENSMUST00000117194.8	known	0.76	8	2.5	8	1;4	n	0.67	5	2.5	5	2;3	y	0.64	8	4.5	8	4;5	y	0.24	2	6.5	2	7;6	y	0.23	3	10.0	3	6;14	y	0.67	6	3.0	6	2;4	y	0.59	8	5.5	8	4;7	y	0.60	6	4.0	6	3;5	y	0.50	3	3.0	3	2;4	n	0.53	8	7.0	8	4;10	y	0.71	10	4.0	10	4;4	y	0.84	8	1.5	8	0;3	n	ENSMUSG00000043987.19	Cep164	chr9	protein_coding	centrosomal protein 164
known_NIR_20022	chr9	45691134;45693546	45693250;45697076	-	45691134	45697076	cassetteExon	ENSMUST00000117194.8	known	0.71	2.5	1	5;0	1	n	0.56	2.5	2	2;3	2	n	0.47	3.5	4	6;1	4	n	0.36	4.0	7	6;2	7	y	0.50	6.0	6	9;3	6	y	0.00	0.0	2	0;0	2	n	0.33	2.0	4	3;1	4	n	0.57	4.0	3	6;2	3	y	0.69	4.5	2	5;4	2	y	0.60	6.0	4	9;3	4	y	0.50	4.0	4	6;2	4	y	1.00	4.5	0	8;1	0	n	ENSMUSG00000043987.19	Cep164	chr9	protein_coding	centrosomal protein 164
known_NIR_20023	chr9	45693546	45697076	-	45693546;45696327	45696181;45697076	ES	ENSMUST00000213154.2	known	0.00	0	3.5	0	4;3	n	0.75	3	1.0	3	2;0	n	0.40	1	1.5	1	2;1	n	0.33	2	4.0	2	6;2	y	0.30	3	7.0	3	7;7	y	-	-	-	-	-	-	0.29	1	2.5	1	1;4	n	0.44	2	2.5	2	2;3	n	0.67	4	2.0	4	1;3	n	0.86	3	0.5	3	0;1	n	0.57	2	1.5	2	2;1	n	0.22	1	3.5	1	6;1	n	ENSMUSG00000043987.19	Cep164	chr9	protein_coding	centrosomal protein 164
known_NIR_20024	chr9	45696327	45697076	-	45691134	45697076	A3SS	ENSMUST00000117194.8	known	0.75	3	1	3	1	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.22	2	7	2	7	n	0.54	7	6	7	6	y	0.00	0	2	0	2	n	0.50	4	4	4	4	n	0.50	3	3	3	3	n	0.60	3	2	3	2	n	0.20	1	4	1	4	n	0.20	1	4	1	4	n	1.00	1	0	1	0	n	ENSMUSG00000043987.19	Cep164	chr9	protein_coding	centrosomal protein 164
known_NIR_20025	chr9	45718942	45721002	-	45714626	45721002	A3SS	ENSMUST00000117194.8	known	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.27	3	8	3	8	y	0.00	0	9	0	9	n	0.18	3	14	3	14	y	0.00	0	3	0	3	n	0.17	3	15	3	15	y	0.50	1	1	1	1	n	0.17	1	5	1	5	n	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.20	1	4	1	4	n	ENSMUSG00000043987.19	Cep164	chr9	protein_coding	centrosomal protein 164
known_NIR_20026	chr9	45735062;45738106	45738024;45739800	-	45735062	45739800	cassetteExon	ENSMUST00000117194.8	known	0.00	0.0	3	0;0	3	n	0.00	0.0	3	0;0	3	n	0.08	1.0	11	1;1	11	n	0.16	1.5	8	1;2	8	n	0.11	1.5	12	0;3	12	n	0.00	0.0	8	0;0	8	n	0.24	2.5	8	2;3	8	y	0.11	0.5	4	0;1	4	n	0.50	1.0	1	0;2	1	n	0.14	2.0	12	4;0	12	n	0.12	1.0	7	1;1	7	n	0.09	1.0	10	2;0	10	n	ENSMUSG00000043987.19	Cep164	chr9	protein_coding	centrosomal protein 164
known_NIR_20027	chr9	45751340	45764186	+	45750586	45764186	A5SS	ENSMUST00000078111.11	known	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.08	1	12	1	12	n	0.00	0	25	0	25	n	0.00	0	39	0	39	n	0.10	2	18	2	18	y	0.00	0	29	0	29	n	0.00	0	22	0	22	n	0.00	0	14	0	14	n	0.00	0	20	0	20	n	0.00	0	19	0	19	n	0.00	0	18	0	18	n	ENSMUSG00000032086.13	Bace1	chr9	protein_coding	beta-site APP cleaving enzyme 1
known_NIR_20028	chr9	45765953	45767386	+	45766141	45767386	A5SS	ENSMUST00000078111.11	known	0.11	1	8	1	8	n	0.06	1	16	1	16	n	0.15	3	17	3	17	y	0.12	3	23	3	23	y	0.06	2	33	2	33	y	0.30	6	14	6	14	y	0.10	2	19	2	19	y	0.08	2	24	2	24	y	0.08	1	11	1	11	n	0.12	4	29	4	29	y	0.30	3	7	3	7	y	0.07	2	26	2	26	y	ENSMUSG00000032086.13	Bace1	chr9	protein_coding	beta-site APP cleaving enzyme 1
known_NIR_20029	chr9	45766141	45767461	+	45766141	45767386	A3SS	ENSMUST00000078111.11	known	0.00	0	8	0	8	n	0.00	0	16	0	16	n	0.11	2	17	2	17	y	0.04	1	23	1	23	n	0.06	2	33	2	33	y	0.00	0	14	0	14	n	0.00	0	19	0	19	n	0.00	0	24	0	24	n	0.00	0	11	0	11	n	0.03	1	29	1	29	n	0.00	0	7	0	7	n	0.07	2	26	2	26	y	ENSMUSG00000032086.13	Bace1	chr9	protein_coding	beta-site APP cleaving enzyme 1
known_NIR_20030	chr9	45777959	45778798	-	45777959;45778349	45778245;45778798	ES	ENSMUST00000161203.8	known	0.79	38	10.0	38	13;7	y	0.68	26	12.0	26	12;12	y	0.61	19	12.0	19	6;18	y	0.66	25	13.0	25	15;11	y	0.60	28	19.0	28	19;19	y	0.77	17	5.0	17	8;2	y	0.65	32	17.0	32	18;16	y	0.76	24	7.5	24	7;8	y	0.62	13	8.0	13	15;1	n	0.82	46	10.0	46	11;9	y	0.82	27	6.0	27	8;4	y	0.80	51	13.0	51	9;17	y	ENSMUSG00000042790.17	Rnf214	chr9	protein_coding	ring finger protein 214
known_NIR_20031	chr9	45809789	45811044	-	45809789	45811509	A5SS	ENSMUST00000161203.8	known	0.94	17	1	17	1	n	0.96	25	1	25	1	n	1.00	22	0	22	0	n	0.81	34	8	34	8	y	0.86	51	8	51	8	y	0.89	24	3	24	3	y	0.89	32	4	32	4	y	0.94	32	2	32	2	y	0.92	24	2	24	2	y	0.72	21	8	21	8	y	0.67	12	6	12	6	y	0.88	29	4	29	4	y	ENSMUSG00000042790.17	Rnf214	chr9	protein_coding	ring finger protein 214
known_NIR_20032	chr9	45809789	45816104	-	45809789	45811044	A5SS&ES	ENSMUST00000162699.8	known	0.23	5	17	5	17	y	0.11	3	25	3	25	y	0.21	6	22	6	22	y	0.23	10	34	10	34	y	0.07	4	51	4	51	y	0.11	3	24	3	24	y	0.20	8	32	8	32	y	0.18	7	32	7	32	y	0.17	5	24	5	24	y	0.25	7	21	7	21	y	0.37	7	12	7	12	y	0.29	12	29	12	29	y	ENSMUSG00000042790.17	Rnf214	chr9	protein_coding	ring finger protein 214
known_NIR_20033	chr9	45809789	45816104	-	45809789	45811509	A5SS&ES	ENSMUST00000160811.3	known	0.83	5	1	5	1	n	0.75	3	1	3	1	n	1.00	6	0	6	0	n	0.56	10	8	10	8	y	0.33	4	8	4	8	y	0.50	3	3	3	3	n	0.67	8	4	8	4	y	0.78	7	2	7	2	n	0.71	5	2	5	2	n	0.47	7	8	7	8	y	0.54	7	6	7	6	y	0.75	12	4	12	4	y	ENSMUSG00000042790.17	Rnf214	chr9	protein_coding	ring finger protein 214
known_NIR_20034	chr9	45809789	45816104	-	45809789;45811554	45811044;45816104	ES	ENSMUST00000058720.13	known	0.20	5	20.5	5	17;24	y	0.16	3	15.5	3	25;6	y	0.24	6	18.5	6	22;15	y	0.25	10	30.5	10	34;27	y	0.09	4	41.0	4	51;31	y	0.14	3	18.5	3	24;13	y	0.21	8	30.5	8	32;29	y	0.22	7	24.5	7	32;17	y	0.20	5	20.5	5	24;17	y	0.25	7	20.5	7	21;20	y	0.35	7	13.0	7	12;14	y	0.29	12	30.0	12	29;31	y	ENSMUSG00000042790.17	Rnf214	chr9	protein_coding	ring finger protein 214
known_NIR_20035	chr9	45809789	45816104	-	45809789;45811554	45811509;45816104	ES	ENSMUST00000161203.8	known	0.29	5	12.5	5	1;24	n	0.46	3	3.5	3	1;6	n	0.44	6	7.5	6	0;15	n	0.36	10	17.5	10	8;27	y	0.17	4	19.5	4	8;31	y	0.27	3	8.0	3	3;13	y	0.33	8	16.5	8	4;29	y	0.42	7	9.5	7	2;17	y	0.34	5	9.5	5	2;17	y	0.33	7	14.0	7	8;20	y	0.41	7	10.0	7	6;14	y	0.41	12	17.5	12	4;31	y	ENSMUSG00000042790.17	Rnf214	chr9	protein_coding	ring finger protein 214
known_NIR_20036	chr9	45816217	45817650	-	45816217	45818036	A5SS	ENSMUST00000161203.8	known	0.14	1	6	1	6	n	0.33	3	6	3	6	n	0.55	6	5	6	5	y	0.56	5	4	5	4	n	0.47	7	8	7	8	y	0.43	3	4	3	4	n	0.22	2	7	2	7	n	0.29	2	5	2	5	n	0.71	5	2	5	2	n	0.47	7	8	7	8	y	0.25	2	6	2	6	n	0.25	3	9	3	9	y	ENSMUSG00000042790.17	Rnf214	chr9	protein_coding	ring finger protein 214
known_NIR_20037	chr9	45818601	45819826	+	45818337	45819826	A5SS	ENSMUST00000039059.8	known	0.41	7	10	7	10	y	0.30	3	7	3	7	y	0.29	5	12	5	12	y	0.15	3	17	3	17	y	0.34	13	25	13	25	y	0.28	5	13	5	13	y	0.14	4	25	4	25	y	0.00	0	12	0	12	n	0.07	1	13	1	13	n	0.13	4	27	4	27	y	0.25	2	6	2	6	n	0.31	4	9	4	9	y	ENSMUSG00000035382.10	Pcsk7	chr9	protein_coding	proprotein convertase subtilisin/kexin type 7
known_NIR_20038	chr9	45821821	45822382	+	45821807	45822382	A5SS	ENSMUST00000039059.8	known	0.00	0	54	0	54	n	0.02	1	47	1	47	n	0.00	0	41	0	41	n	0.00	0	41	0	41	n	0.00	0	48	0	48	n	0.00	0	35	0	35	n	0.05	2	36	2	36	y	0.00	0	36	0	36	n	0.03	1	29	1	29	n	0.04	2	49	2	49	y	0.00	0	46	0	46	n	0.02	1	49	1	49	n	ENSMUSG00000035382.10	Pcsk7	chr9	protein_coding	proprotein convertase subtilisin/kexin type 7
known_NIR_20039	chr9	45829927	45830060	+	45827386	45830060	A5SS	ENSMUST00000039059.8	known	0.00	0	28	0	28	n	0.04	2	54	2	54	y	0.02	1	52	1	52	n	0.02	1	59	1	59	n	0.01	1	72	1	72	n	0.06	2	34	2	34	y	0.00	0	65	0	65	n	0.03	1	30	1	30	n	0.04	2	52	2	52	y	0.03	2	62	2	62	y	0.04	2	46	2	46	y	0.04	2	55	2	55	y	ENSMUSG00000035382.10	Pcsk7	chr9	protein_coding	proprotein convertase subtilisin/kexin type 7
known_NIR_20040	chr9	45831192	45837216	+	45831192	45837209	A3SS	ENSMUST00000039059.8	known	0.05	2	36	2	36	y	0.00	0	48	0	48	n	0.02	1	48	1	48	n	0.00	0	48	0	48	n	0.00	0	61	0	61	n	0.14	3	19	3	19	y	0.00	0	66	0	66	n	0.00	0	29	0	29	n	0.00	0	45	0	45	n	0.02	1	51	1	51	n	0.05	2	40	2	40	y	0.04	2	53	2	53	y	ENSMUSG00000035382.10	Pcsk7	chr9	protein_coding	proprotein convertase subtilisin/kexin type 7
known_NIR_20041	chr9	45838126;45838416	45838335;45838873	+	45838126	45838873	cassetteExon	ENSMUST00000039059.8	known	0.12	5.5	41	6;5	41	y	0.15	7.5	43	7;8	43	y	0.06	3.0	45	3;3	45	y	0.11	6.0	50	5;7	50	y	0.11	8.5	71	8;9	71	y	0.10	2.5	23	2;3	23	y	0.10	5.0	47	6;4	47	y	0.11	3.0	25	3;3	25	y	0.08	3.5	40	2;5	40	y	0.06	4.0	68	4;4	68	y	0.23	10.5	35	11;10	35	y	0.21	12.0	46	6;18	46	y	ENSMUSG00000035382.10	Pcsk7	chr9	protein_coding	proprotein convertase subtilisin/kexin type 7
known_NIR_20042	chr9	45850805	45852599	-	45850818	45852599	A3SS	ENSMUST00000038488.17	known	0.03	9	265	9	265	y	0.05	12	244	12	244	y	0.06	20	339	20	339	y	0.07	19	265	19	265	y	0.03	10	365	10	365	y	0.06	13	190	13	190	y	0.06	18	270	18	270	y	0.05	11	211	11	211	y	0.03	6	177	6	177	y	0.06	19	302	19	302	y	0.06	14	228	14	228	y	0.04	10	245	10	245	y	ENSMUSG00000034908.17	Sidt2	chr9	protein_coding	SID1 transmembrane family, member 2
known_NIR_20043	chr9	45857064	45858043	-	45857082	45858043	A3SS	ENSMUST00000038488.17	known	0.00	0	22	0	22	n	0.00	0	19	0	19	n	0.05	2	37	2	37	y	0.12	3	21	3	21	y	0.00	0	30	0	30	n	0.06	1	17	1	17	n	0.18	6	27	6	27	y	0.00	0	14	0	14	n	0.06	1	17	1	17	n	0.15	4	23	4	23	y	0.00	0	14	0	14	n	0.16	4	21	4	21	y	ENSMUSG00000034908.17	Sidt2	chr9	protein_coding	SID1 transmembrane family, member 2
known_NIR_20044	chr9	45857064	45858043	-	45857866	45858043	A3SS&ES	ENSMUST00000114573.9	known	0.00	0	107	0	107	n	0.00	0	95	0	95	n	0.01	2	162	2	162	y	0.02	3	189	3	189	y	0.00	0	202	0	202	n	0.01	1	102	1	102	n	0.03	6	169	6	169	y	0.00	0	116	0	116	n	0.01	1	94	1	94	n	0.02	4	189	4	189	y	0.00	0	126	0	126	n	0.03	4	139	4	139	y	ENSMUSG00000034908.17	Sidt2	chr9	protein_coding	SID1 transmembrane family, member 2
known_NIR_20045	chr9	45857082;45857866	45857804;45858043	-	45857082	45858043	cassetteExon	ENSMUST00000038488.17	known	0.82	102.5	22	98;107	22	y	0.83	94.0	19	93;95	19	y	0.82	170.0	37	178;162	37	y	0.90	190.0	21	191;189	21	y	0.88	213.5	30	225;202	30	y	0.87	114.5	17	127;102	17	y	0.87	174.5	27	180;169	27	y	0.89	116.0	14	116;116	14	y	0.85	98.0	17	102;94	17	y	0.89	177.0	23	165;189	23	y	0.89	119.0	14	112;126	14	y	0.88	150.5	21	162;139	21	y	ENSMUSG00000034908.17	Sidt2	chr9	protein_coding	SID1 transmembrane family, member 2
known_NIR_20046	chr9	45858353	45858839	-	45858353	45858927	A5SS	ENSMUST00000160670.8	known	0.12	3	23	3	23	y	0.16	3	16	3	16	y	0.15	6	33	6	33	y	0.14	4	24	4	24	y	0.13	8	52	8	52	y	0.12	3	21	3	21	y	0.33	13	26	13	26	y	0.17	3	15	3	15	y	0.21	5	19	5	19	y	0.29	6	15	6	15	y	0.12	3	21	3	21	y	0.22	5	18	5	18	y	ENSMUSG00000034908.17	Sidt2	chr9	protein_coding	SID1 transmembrane family, member 2
known_NIR_20047	chr9	45858353	45859134	-	45858353	45858927	5pMXE	ENSMUST00000160670.8	known	0.85	129	23	129	23	y	0.86	101	16	101	16	y	0.84	178	33	178	33	y	0.87	154	24	154	24	y	0.81	219	52	219	52	y	0.84	109	21	109	21	y	0.85	147	26	147	26	y	0.88	108	15	108	15	y	0.82	88	19	88	19	y	0.93	188	15	188	15	y	0.86	130	21	130	21	y	0.90	159	18	159	18	y	ENSMUSG00000034908.17	Sidt2	chr9	protein_coding	SID1 transmembrane family, member 2
known_NIR_20048	chr9	45858353;45858850	45858839;45859134	-	45858353	45859134	cassetteExon	ENSMUST00000038488.17	known	0.02	3.0	129	3;3	129	y	0.02	2.5	101	3;2	101	y	0.04	6.5	178	6;7	178	y	0.02	3.5	154	4;3	154	y	0.04	8.0	219	8;8	219	y	0.03	3.5	109	3;4	109	y	0.08	12.5	147	13;12	147	y	0.03	3.0	108	3;3	108	y	0.04	4.0	88	5;3	88	y	0.03	6.0	188	6;6	188	y	0.03	3.5	130	3;4	130	y	0.03	4.5	159	5;4	159	y	ENSMUSG00000034908.17	Sidt2	chr9	protein_coding	SID1 transmembrane family, member 2
known_NIR_20049	chr9	45858353;45858850	45858839;45859134	-	45858353;45858995	45858927;45859134	MXE	ENSMUST00000160138.8	known	0.12	3.0	21.0	3;3	23;19	y	0.16	2.5	13.5	3;2	16;11	y	0.18	6.5	29.5	6;7	33;26	y	0.14	3.5	22.0	4;3	24;20	y	0.16	8.0	43.0	8;8	52;34	y	0.14	3.5	21.5	3;4	21;22	y	0.31	12.5	27.5	13;12	26;29	y	0.16	3.0	15.5	3;3	15;16	y	0.16	4.0	21.5	5;3	19;24	y	0.28	6.0	15.5	6;6	15;16	y	0.16	3.5	19.0	3;4	21;17	y	0.20	4.5	18.5	5;4	18;19	y	ENSMUSG00000034908.17	Sidt2	chr9	protein_coding	SID1 transmembrane family, member 2
known_NIR_20050	chr9	45858353;45858995	45858839;45859134	-	45858353	45859134	cassetteExon	ENSMUST00000038488.17	known	0.08	11.0	129	3;19	129	y	0.06	7.0	101	3;11	101	y	0.08	16.0	178	6;26	178	y	0.07	12.0	154	4;20	154	y	0.09	21.0	219	8;34	219	y	0.10	12.5	109	3;22	109	y	0.12	21.0	147	13;29	147	y	0.08	9.5	108	3;16	108	y	0.14	14.5	88	5;24	88	y	0.06	11.0	188	6;16	188	y	0.07	10.0	130	3;17	130	y	0.07	12.0	159	5;19	159	y	ENSMUSG00000034908.17	Sidt2	chr9	protein_coding	SID1 transmembrane family, member 2
known_NIR_20051	chr9	45858353;45858995	45858927;45859134	-	45858353	45859134	cassetteExon	ENSMUST00000038488.17	known	0.14	21.0	129	23;19	129	y	0.12	13.5	101	16;11	101	y	0.14	29.5	178	33;26	178	y	0.12	22.0	154	24;20	154	y	0.16	43.0	219	52;34	219	y	0.16	21.5	109	21;22	109	y	0.16	27.5	147	26;29	147	y	0.13	15.5	108	15;16	108	y	0.20	21.5	88	19;24	88	y	0.08	15.5	188	15;16	188	y	0.13	19.0	130	21;17	130	y	0.10	18.5	159	18;19	159	y	ENSMUSG00000034908.17	Sidt2	chr9	protein_coding	SID1 transmembrane family, member 2
known_NIR_20052	chr9	45890021	45896003	-	45890027	45896003	A3SS	ENSMUST00000172450.3	known	0.00	0	37	0	37	n	0.00	0	17	0	17	n	0.00	0	70	0	70	n	0.00	0	51	0	51	n	0.00	0	60	0	60	n	0.00	0	37	0	37	n	0.00	0	41	0	41	n	0.05	2	37	2	37	y	0.00	0	26	0	26	n	0.00	0	45	0	45	n	0.00	0	26	0	26	n	0.03	1	37	1	37	n	ENSMUSG00000003131.8	Pafah1b2	chr9	protein_coding	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2
known_NIR_20053	chr9	45890027	45896600	-	45890027	45896003	5pMXE	ENSMUST00000172450.3	known	0.03	1	37	1	37	n	0.23	5	17	5	17	y	0.05	4	70	4	70	y	0.04	2	51	2	51	y	0.02	1	60	1	60	n	0.07	3	37	3	37	y	0.02	1	41	1	41	n	0.00	0	37	0	37	n	0.07	2	26	2	26	y	0.06	3	45	3	45	y	0.04	1	26	1	26	n	0.07	3	37	3	37	y	ENSMUSG00000003131.8	Pafah1b2	chr9	protein_coding	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2
known_NIR_20054	chr9	45890027	45923821	-	45890027	45896003	5pMXE	ENSMUST00000172450.3	known	0.00	0	37	0	37	n	0.00	0	17	0	17	n	0.00	0	70	0	70	n	0.00	0	51	0	51	n	0.00	0	60	0	60	n	0.00	0	37	0	37	n	0.00	0	41	0	41	n	0.00	0	37	0	37	n	0.00	0	26	0	26	n	0.02	1	45	1	45	n	0.00	0	26	0	26	n	0.05	2	37	2	37	y	ENSMUSG00000003131.8	Pafah1b2	chr9	protein_coding	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2
known_NIR_20055	chr9	46145838	46146557	-	46145838	46145957	A5SS&ES	ENSMUST00000121916.8	known	0.02	178	9141	178	9141	y	0.02	200	10620	200	10620	y	0.01	121	8339	121	8339	y	0.02	232	11267	232	11267	y	0.01	127	11309	127	11309	y	0.01	42	4861	42	4861	y	0.01	111	10626	111	10626	y	0.01	65	5401	65	5401	y	0.01	162	11540	162	11540	y	0.02	235	15252	235	15252	y	0.01	183	14723	183	14723	y	0.01	189	15504	189	15504	y	ENSMUSG00000032081.11	Apoc3	chr9	protein_coding	apolipoprotein C-III
known_NIR_20056	chr9	46145838	46146557	-	46145838;46146024	46145957;46146557	ES	ENSMUST00000034586.9	known	0.03	178	6788.5	178	9141;4436	y	0.02	200	7825.0	200	10620;5030	y	0.02	121	6242.0	121	8339;4145	y	0.03	232	8524.0	232	11267;5781	y	0.01	127	8556.0	127	11309;5803	y	0.01	42	3644.0	42	4861;2427	y	0.01	111	7995.0	111	10626;5364	y	0.02	65	4050.0	65	5401;2699	y	0.02	162	8750.0	162	11540;5960	y	0.02	235	11435.5	235	15252;7619	y	0.02	183	11081.0	183	14723;7439	y	0.02	189	11547.5	189	15504;7591	y	ENSMUSG00000032081.11	Apoc3	chr9	protein_coding	apolipoprotein C-III
known_NIR_20057	chr9	46146024	46146557	-	46146024	46146453	A5SS	ENSMUST00000121916.8	known	0.94	4436	307	4436	307	y	0.94	5030	330	5030	330	y	0.95	4145	197	4145	197	y	0.93	5781	413	5781	413	y	0.95	5803	322	5803	322	y	0.94	2427	143	2427	143	y	0.94	5364	332	5364	332	y	0.95	2699	137	2699	137	y	0.93	5960	419	5960	419	y	0.93	7619	532	7619	532	y	0.94	7439	475	7439	475	y	0.94	7591	467	7591	467	y	ENSMUSG00000032081.11	Apoc3	chr9	protein_coding	apolipoprotein C-III
known_NIR_20058	chr9	46146024	46146617	-	46146024	46146453	5pMXE	ENSMUST00000121916.8	known	0.01	2	307	2	307	y	0.01	3	330	3	330	y	0.02	5	197	5	197	y	0.00	2	413	2	413	y	0.00	0	322	0	322	n	0.00	0	143	0	143	n	0.01	3	332	3	332	y	0.01	1	137	1	137	n	0.00	1	419	1	419	n	0.00	1	532	1	532	n	0.00	1	475	1	475	n	0.00	1	467	1	467	n	ENSMUSG00000032081.11	Apoc3	chr9	protein_coding	apolipoprotein C-III
known_NIR_20059	chr9	46146024	46146617	-	46146024	46146557	5pMXE	ENSMUST00000034586.9	known	0.00	2	4436	2	4436	y	0.00	3	5030	3	5030	y	0.00	5	4145	5	4145	y	0.00	2	5781	2	5781	y	0.00	0	5803	0	5803	n	0.00	0	2427	0	2427	n	0.00	3	5364	3	5364	y	0.00	1	2699	1	2699	n	0.00	1	5960	1	5960	n	0.00	1	7619	1	7619	n	0.00	1	7439	1	7439	n	0.00	1	7591	1	7591	n	ENSMUSG00000032081.11	Apoc3	chr9	protein_coding	apolipoprotein C-III
known_NIR_20060	chr9	46146024	46146617	-	46146024	46146820	A5SS	ENSMUST00000118649.8	known	0.10	2	19	2	19	y	0.14	3	18	3	18	y	0.14	5	31	5	31	y	0.06	2	29	2	29	y	0.00	0	14	0	14	n	0.00	0	14	0	14	n	0.13	3	20	3	20	y	0.08	1	11	1	11	n	0.03	1	32	1	32	n	0.03	1	39	1	39	n	0.04	1	27	1	27	n	0.02	1	46	1	46	n	ENSMUSG00000032081.11	Apoc3	chr9	protein_coding	apolipoprotein C-III
known_NIR_20061	chr9	46146024	46146820	-	46146024	46146453	5pMXE	ENSMUST00000121916.8	known	0.06	19	307	19	307	y	0.05	18	330	18	330	y	0.14	31	197	31	197	y	0.07	29	413	29	413	y	0.04	14	322	14	322	y	0.09	14	143	14	143	y	0.06	20	332	20	332	y	0.07	11	137	11	137	y	0.07	32	419	32	419	y	0.07	39	532	39	532	y	0.05	27	475	27	475	y	0.09	46	467	46	467	y	ENSMUSG00000032081.11	Apoc3	chr9	protein_coding	apolipoprotein C-III
known_NIR_20062	chr9	46146024	46146820	-	46146024	46146557	5pMXE	ENSMUST00000034586.9	known	0.00	19	4436	19	4436	y	0.00	18	5030	18	5030	y	0.01	31	4145	31	4145	y	0.00	29	5781	29	5781	y	0.00	14	5803	14	5803	y	0.01	14	2427	14	2427	y	0.00	20	5364	20	5364	y	0.00	11	2699	11	2699	y	0.01	32	5960	32	5960	y	0.01	39	7619	39	7619	y	0.00	27	7439	27	7439	y	0.01	46	7591	46	7591	y	ENSMUSG00000032081.11	Apoc3	chr9	protein_coding	apolipoprotein C-III
known_NIR_20063	chr9	46202708	46202998	+	46202708	46202993	A3SS	ENSMUST00000138498.2	known	0.17	4	20	4	20	y	0.00	0	42	0	42	n	0.09	4	41	4	41	y	0.10	2	19	2	19	y	0.07	2	25	2	25	y	0.08	2	22	2	22	y	0.00	0	34	0	34	n	0.05	1	18	1	18	n	0.16	3	16	3	16	y	0.08	3	35	3	35	y	0.00	0	15	0	15	n	0.12	6	44	6	44	y	ENSMUSG00000032077.6	Bud13	chr9	protein_coding	BUD13 homolog
known_NIR_20064	chr9	47725243	47759465	+	47725243	47730032	3pMXE	ENSMUST00000124073.8	known	0.00	0	18	0	18	n	0.04	1	25	1	25	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	26	0	26	n	0.14	1	6	1	6	n	0.12	3	21	3	21	y	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.11	3	25	3	25	y	0.21	7	27	7	27	y	0.14	5	32	5	32	y	ENSMUSG00000032076.21	Cadm1	chr9	protein_coding	cell adhesion molecule 1
known_NIR_20065	chr9	47725243;47730115	47730032;47759465	+	47725243	47759465	cassetteExon	ENSMUST00000143026.9	known	1.00	16.0	0	18;14	0	n	0.95	18.0	1	25;11	1	n	1.00	12.0	0	15;9	0	n	1.00	12.0	0	10;14	0	n	1.00	23.0	0	26;20	0	n	0.88	7.0	1	6;8	1	n	0.90	26.5	3	21;32	3	y	1.00	17.5	0	18;17	0	n	1.00	17.5	0	13;22	0	n	0.88	22.0	3	25;19	3	y	0.78	24.5	7	27;22	7	y	0.84	25.5	5	32;19	5	y	ENSMUSG00000032076.21	Cadm1	chr9	protein_coding	cell adhesion molecule 1
known_NIR_20066	chr9	47730115	47759465	+	47730115;47740707	47740675;47759465	ES	ENSMUST00000085909.9	known	0.85	14	2.5	14	2;3	y	0.96	11	0.5	11	1;0	n	0.90	9	1.0	9	1;1	n	0.88	14	2.0	14	2;2	y	1.00	20	0.0	20	0;0	n	1.00	8	0.0	8	0;0	n	0.94	32	2.0	32	2;2	y	0.89	17	2.0	17	2;2	y	0.98	22	0.5	22	0;1	n	0.97	19	0.5	19	0;1	n	0.98	22	0.5	22	0;1	n	0.95	19	1.0	19	1;1	n	ENSMUSG00000032076.21	Cadm1	chr9	protein_coding	cell adhesion molecule 1
known_NIR_20067	chr9	48234402	48237391	-	48234402	48250814	A5SS	ENSMUST00000135457.8	known	0.87	39	6	39	6	y	0.85	35	6	35	6	y	1.00	8	0	8	0	n	0.81	22	5	22	5	y	0.88	81	11	81	11	y	0.83	10	2	10	2	y	0.86	59	10	59	10	y	0.76	25	8	25	8	y	0.80	20	5	20	5	y	0.88	49	7	49	7	y	0.71	15	6	15	6	y	0.93	13	1	13	1	n	ENSMUSG00000032028.16	Nxpe2	chr9	protein_coding	neurexophilin and PC-esterase domain family, member 2
known_NIR_20068	chr9	48234402	48250814	-	48234402;48238121	48237391;48250814	ES	ENSMUST00000034527.14	known	0.13	6	39.0	6	39;39	y	0.18	6	26.5	6	35;18	y	0.00	0	6.5	0	8;5	n	0.12	5	36.0	5	22;50	y	0.12	11	79.0	11	81;77	y	0.14	2	12.5	2	10;15	y	0.13	10	66.0	10	59;73	y	0.26	8	22.5	8	25;20	y	0.15	5	28.5	5	20;37	y	0.12	7	53.5	7	49;58	y	0.31	6	13.5	6	15;12	y	0.09	1	10.5	1	13;8	n	ENSMUSG00000032028.16	Nxpe2	chr9	protein_coding	neurexophilin and PC-esterase domain family, member 2
known_NIR_20069	chr9	48238121	48250814	-	48234402	48250814	A3SS	ENSMUST00000135457.8	known	0.87	39	6	39	6	y	0.75	18	6	18	6	y	1.00	5	0	5	0	n	0.91	50	5	50	5	y	0.88	77	11	77	11	y	0.88	15	2	15	2	y	0.88	73	10	73	10	y	0.71	20	8	20	8	y	0.88	37	5	37	5	y	0.89	58	7	58	7	y	0.67	12	6	12	6	y	0.89	8	1	8	1	n	ENSMUSG00000032028.16	Nxpe2	chr9	protein_coding	neurexophilin and PC-esterase domain family, member 2
known_NIR_20070	chr9	48243081	48250814	-	48234402	48250814	A3SS	ENSMUST00000135457.8	known	0.00	0	6	0	6	n	0.00	0	6	0	6	n	1.00	8	0	8	0	n	0.17	1	5	1	5	n	0.42	8	11	8	11	y	0.71	5	2	5	2	n	0.29	4	10	4	10	y	0.33	4	8	4	8	y	0.38	3	5	3	5	n	0.46	6	7	6	7	y	0.25	2	6	2	6	n	0.00	0	1	0	1	n	ENSMUSG00000032028.16	Nxpe2	chr9	protein_coding	neurexophilin and PC-esterase domain family, member 2
known_NIR_20071	chr9	48243081	48250814	-	48238121	48250814	A3SS	ENSMUST00000034527.14	known	0.00	0	39	0	39	n	0.00	0	18	0	18	n	0.62	8	5	8	5	y	0.02	1	50	1	50	n	0.09	8	77	8	77	y	0.25	5	15	5	15	y	0.05	4	73	4	73	y	0.17	4	20	4	20	y	0.07	3	37	3	37	y	0.09	6	58	6	58	y	0.14	2	12	2	12	y	0.00	0	8	0	8	n	ENSMUSG00000032028.16	Nxpe2	chr9	protein_coding	neurexophilin and PC-esterase domain family, member 2
known_NIR_20072	chr9	48250922	48264664	-	48250922	48251872	5pMXE	ENSMUST00000034527.14	known	0.00	0	44	0	44	n	0.00	0	24	0	24	n	0.00	0	12	0	12	n	0.00	0	62	0	62	n	0.00	0	104	0	104	n	0.00	0	26	0	26	n	0.01	1	78	1	78	n	0.00	0	33	0	33	n	0.00	0	36	0	36	n	0.03	2	77	2	77	y	0.00	0	24	0	24	n	0.00	0	12	0	12	n	ENSMUSG00000032028.16	Nxpe2	chr9	protein_coding	neurexophilin and PC-esterase domain family, member 2
known_NIR_20073	chr9	48384921	48385702	-	48384440	48385702	A3SS	ENSMUST00000034524.5	known	0.00	1	359	1	359	n	0.01	3	389	3	389	y	0.01	4	586	4	586	y	0.01	5	416	5	416	y	0.00	2	441	2	441	y	0.00	0	342	0	342	n	0.00	1	463	1	463	n	0.00	0	292	0	292	n	0.00	2	399	2	399	y	0.01	3	498	3	498	y	0.00	2	521	2	521	y	0.00	2	418	2	418	y	ENSMUSG00000032026.8	Rexo2	chr9	protein_coding	RNA exonuclease 2
known_NIR_20074	chr9	48385670	48386420	-	48385670;48385813	48385761;48386420	ES	ENSMUST00000217037.2	known	0.01	3	216.0	3	3;429	y	0.01	3	233.0	3	0;466	n	0.01	2	309.5	2	9;610	y	0.00	0	234.0	0	3;465	n	0.01	3	254.5	3	3;506	y	0.00	0	199.5	0	4;395	n	0.01	3	245.5	3	4;487	y	0.00	0	160.0	0	4;316	n	0.02	3	186.0	3	2;370	y	0.01	2	281.5	2	0;563	n	0.00	1	256.5	1	2;511	n	0.00	0	205.0	0	0;410	n	ENSMUSG00000032026.8	Rexo2	chr9	protein_coding	RNA exonuclease 2
known_NIR_20075	chr9	48385670	48386420	-	48385813	48386420	A3SS&ES	ENSMUST00000034524.5	known	0.01	3	429	3	429	y	0.01	3	466	3	466	y	0.00	2	610	2	610	y	0.00	0	465	0	465	n	0.01	3	506	3	506	y	0.00	0	395	0	395	n	0.01	3	487	3	487	y	0.00	0	316	0	316	n	0.01	3	370	3	370	y	0.00	2	563	2	563	y	0.00	1	511	1	511	n	0.00	0	410	0	410	n	ENSMUSG00000032026.8	Rexo2	chr9	protein_coding	RNA exonuclease 2
known_NIR_20076	chr9	48385670	48386420	-	48386199	48386420	A3SS	ENSMUST00000213508.2	known	1.00	3	0	3	0	n	0.25	3	9	3	9	y	0.11	2	17	2	17	y	0.00	0	2	0	2	n	0.21	3	11	3	11	y	-	-	-	-	-	-	0.19	3	13	3	13	y	0.00	0	4	0	4	n	1.00	3	0	3	0	n	1.00	2	0	2	0	n	0.08	1	11	1	11	n	0.00	0	9	0	9	n	ENSMUSG00000032026.8	Rexo2	chr9	protein_coding	RNA exonuclease 2
known_NIR_20077	chr9	48385670;48386199	48385761;48386420	-	48385670	48386420	cassetteExon	ENSMUST00000216470.2	known	0.33	1.5	3	3;0	3	n	0.60	4.5	3	0;9	3	n	0.87	13.0	2	9;17	2	y	1.00	2.5	0	3;2	0	n	0.70	7.0	3	3;11	3	y	1.00	2.0	0	4;0	0	n	0.74	8.5	3	4;13	3	y	1.00	4.0	0	4;4	0	n	0.25	1.0	3	2;0	3	n	0.00	0.0	2	0;0	2	n	0.87	6.5	1	2;11	1	n	1.00	4.5	0	0;9	0	n	ENSMUSG00000032026.8	Rexo2	chr9	protein_coding	RNA exonuclease 2
known_NIR_20078	chr9	48386199	48386420	-	48385813	48386420	A3SS	ENSMUST00000034524.5	known	0.00	0	429	0	429	n	0.02	9	466	9	466	y	0.03	17	610	17	610	y	0.00	2	465	2	465	y	0.02	11	506	11	506	y	0.00	0	395	0	395	n	0.03	13	487	13	487	y	0.01	4	316	4	316	y	0.00	0	370	0	370	n	0.00	0	563	0	563	n	0.02	11	511	11	511	y	0.02	9	410	9	410	y	ENSMUSG00000032026.8	Rexo2	chr9	protein_coding	RNA exonuclease 2
known_NIR_20079	chr9	48386497	48391707	-	48386497;48390693	48390610;48391707	ES	ENSMUST00000034524.5	known	0.01	3	359.5	3	383;336	y	0.01	2	360.5	2	419;302	y	0.01	5	576.5	5	638;515	y	0.01	3	418.0	3	474;362	y	0.01	4	496.0	4	528;464	y	0.00	1	375.0	1	389;361	n	0.01	4	456.0	4	513;399	y	0.00	1	298.5	1	329;268	n	0.01	4	332.0	4	354;310	y	0.01	3	512.0	3	577;447	y	0.00	0	485.5	0	538;433	n	0.00	0	411.5	0	472;351	n	ENSMUSG00000032026.8	Rexo2	chr9	protein_coding	RNA exonuclease 2
known_NIR_20080	chr9	48405481;48405687	48405583;48406455	-	48405481	48406455	cassetteExon	ENSMUST00000213276.2	known	0.23	18.5	61	20;17	61	y	0.20	12.5	51	18;7	51	y	0.17	22.5	108	22;23	108	y	0.11	12.0	93	15;9	93	y	0.26	27.0	78	31;23	78	y	0.21	15.0	56	14;16	56	y	0.26	23.5	68	24;23	68	y	0.24	16.0	50	21;11	50	y	0.25	19.0	57	19;19	57	y	0.19	17.5	74	22;13	74	y	0.14	10.5	67	15;6	67	y	0.16	14.5	74	19;10	74	y	ENSMUSG00000042396.11	Rbm7	chr9	protein_coding	RNA binding motif protein 7
known_NIR_20081	chr9	48744399	48747354	-	48744399	48747088	5pMXE	ENSMUST00000093852.5	known	0.73	16	6	16	6	y	0.50	4	4	4	4	n	0.75	12	4	12	4	y	0.50	6	6	6	6	y	0.24	4	13	4	13	y	0.11	1	8	1	8	n	0.50	11	11	11	11	y	0.20	3	12	3	12	y	0.40	2	3	2	3	n	0.00	0	2	0	2	n	0.50	2	2	2	2	n	0.44	4	5	4	5	n	ENSMUSG00000066687.6	Zbtb16	chr9	protein_coding	zinc finger and BTB domain containing 16
known_NIR_20082	chr9	48943653	48943809	+	48943653	48946893	A3SS	ENSMUST00000213874.2	known	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.68	17	8	17	8	y	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.00	0	19	0	19	n	0.00	0	21	0	21	n	ENSMUSG00000032267.9	Usp28	chr9	protein_coding	ubiquitin specific peptidase 28
known_NIR_20083	chr9	48944972	48946893	+	48943653	48946893	A5SS	ENSMUST00000213874.2	known	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.38	5	8	5	8	y	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.00	0	19	0	19	n	0.00	0	21	0	21	n	ENSMUSG00000032267.9	Usp28	chr9	protein_coding	ubiquitin specific peptidase 28
known_NIR_20084	chr9	50436079	50436453	-	50436079	50436562	A5SS	ENSMUST00000034570.7	known	0.00	0	50	0	50	n	0.00	0	82	0	82	n	0.02	1	48	1	48	n	0.02	1	60	1	60	n	0.05	4	74	4	74	y	0.00	0	22	0	22	n	0.05	5	88	5	88	y	0.00	0	21	0	21	n	0.03	3	84	3	84	y	0.00	0	113	0	113	n	0.01	1	79	1	79	n	0.00	0	94	0	94	n	ENSMUSG00000032067.7	Pts	chr9	protein_coding	6-pyruvoyl-tetrahydropterin synthase
known_NIR_20085	chr9	50436264	50436562	-	50436079	50436562	A3SS	ENSMUST00000034570.7	known	0.07	4	50	4	50	y	0.06	5	82	5	82	y	0.02	1	48	1	48	n	0.08	5	60	5	60	y	0.13	11	74	11	74	y	0.04	1	22	1	22	n	0.12	12	88	12	88	y	0.05	1	21	1	21	n	0.01	1	84	1	84	n	0.09	11	113	11	113	y	0.12	11	79	11	79	y	0.09	9	94	9	94	y	ENSMUSG00000032067.7	Pts	chr9	protein_coding	6-pyruvoyl-tetrahydropterin synthase
known_NIR_20086	chr9	50438249	50439857	-	50438249	50439446	A5SS	ENSMUST00000216201.2	known	0.71	39	16	39	16	y	0.76	48	15	48	15	y	0.88	49	7	49	7	y	0.75	53	18	53	18	y	0.76	62	20	62	20	y	0.78	32	9	32	9	y	0.59	48	33	48	33	y	0.65	20	11	20	11	y	0.73	33	12	33	12	y	0.69	85	39	85	39	y	0.79	54	14	54	14	y	0.64	52	29	52	29	y	ENSMUSG00000032067.7	Pts	chr9	protein_coding	6-pyruvoyl-tetrahydropterin synthase
known_NIR_20087	chr9	50438249;50439532	50439446;50439857	-	50438249	50439857	cassetteExon	ENSMUST00000034570.7	known	0.28	15.0	39	16;14	39	y	0.22	13.5	48	15;12	48	y	0.11	6.0	49	7;5	49	y	0.21	14.0	53	18;10	53	y	0.22	17.5	62	20;15	62	y	0.17	6.5	32	9;4	32	y	0.36	26.5	48	33;20	48	y	0.38	12.0	20	11;13	20	y	0.25	11.0	33	12;10	33	y	0.29	34.0	85	39;29	85	y	0.19	12.5	54	14;11	54	y	0.31	23.5	52	29;18	52	y	ENSMUSG00000032067.7	Pts	chr9	protein_coding	6-pyruvoyl-tetrahydropterin synthase
known_NIR_20088	chr9	50438316	50439857	-	50438249	50439857	A3SS	ENSMUST00000034570.7	known	0.00	0	39	0	39	n	0.06	3	48	3	48	y	0.00	0	49	0	49	n	0.07	4	53	4	53	y	0.03	2	62	2	62	y	0.00	0	32	0	32	n	0.02	1	48	1	48	n	0.00	0	20	0	20	n	0.00	0	33	0	33	n	0.04	4	85	4	85	y	0.02	1	54	1	54	n	0.05	3	52	3	52	y	ENSMUSG00000032067.7	Pts	chr9	protein_coding	6-pyruvoyl-tetrahydropterin synthase
known_NIR_20089	chr9	50439532	50439857	-	50438316	50439857	A3SS	ENSMUST00000214873.2	known	1.00	14	0	14	0	n	0.80	12	3	12	3	y	1.00	5	0	5	0	n	0.71	10	4	10	4	y	0.88	15	2	15	2	y	1.00	4	0	4	0	n	0.95	20	1	20	1	n	1.00	13	0	13	0	n	1.00	10	0	10	0	n	0.88	29	4	29	4	y	0.92	11	1	11	1	n	0.86	18	3	18	3	y	ENSMUSG00000032067.7	Pts	chr9	protein_coding	6-pyruvoyl-tetrahydropterin synthase
known_NIR_20090	chr9	50489192;50490720	50490587;50492790	+	50489192	50492790	cassetteExon	ENSMUST00000213916.2	known	1.00	47.0	0	50;44	0	n	1.00	51.5	0	49;54	0	n	1.00	43.0	0	42;44	0	n	1.00	60.5	0	66;55	0	n	0.98	62.0	1	63;61	1	n	1.00	21.0	0	27;15	0	n	1.00	72.0	0	70;74	0	n	1.00	31.0	0	34;28	0	n	0.97	57.0	2	49;65	2	y	0.98	91.0	2	88;94	2	y	1.00	74.5	0	69;80	0	n	1.00	106.0	0	108;104	0	n	ENSMUSG00000039217.14	Il18	chr9	protein_coding	interleukin 18
known_NIR_20091	chr9	50526859	50528528	-	50526859	50527958	A5SS	ENSMUST00000145139.8	known	0.47	8	9	8	9	y	0.43	3	4	3	4	n	0.56	9	7	9	7	y	0.36	4	7	4	7	y	0.00	0	9	0	9	n	0.43	3	4	3	4	n	0.45	9	11	9	11	y	0.00	0	4	0	4	n	0.33	3	6	3	6	n	0.00	0	10	0	10	n	0.38	3	5	3	5	n	0.19	3	13	3	13	y	ENSMUSG00000059820.15	Nkapd1	chr9	protein_coding	NKAP domain containing 1
known_NIR_20092	chr9	50526859;50527984	50527958;50528528	-	50526859	50528528	cassetteExon	ENSMUST00000131351.8	known	0.36	4.5	8	9;0	8	n	0.40	2.0	3	4;0	3	n	0.28	3.5	9	7;0	9	n	0.53	4.5	4	7;2	4	y	1.00	4.5	0	9;0	0	n	0.40	2.0	3	4;0	3	n	0.38	5.5	9	11;0	9	n	1.00	2.0	0	4;0	0	n	0.50	3.0	3	6;0	3	n	1.00	6.0	0	10;2	0	n	0.45	2.5	3	5;0	3	n	0.73	8.0	3	13;3	3	y	ENSMUSG00000059820.15	Nkapd1	chr9	protein_coding	NKAP domain containing 1
known_NIR_20093	chr9	50588281	50592787	-	50580855	50592787	A3SS	ENSMUST00000034566.15	known	0.18	2	9	2	9	y	0.15	2	11	2	11	y	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.10	1	9	1	9	n	0.00	0	5	0	5	n	0.07	1	14	1	14	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.06	1	15	1	15	n	0.10	2	19	2	19	y	ENSMUSG00000032064.18	Dixdc1	chr9	protein_coding	DIX domain containing 1
known_NIR_20094	chr9	50675590	50676065	-	50675590	50675996	A5SS	ENSMUST00000042468.9	known	0.08	10	120	10	120	y	0.09	13	136	13	136	y	0.07	7	90	7	90	y	0.12	12	91	12	91	y	0.11	19	159	19	159	y	0.15	15	83	15	83	y	0.10	18	165	18	165	y	0.11	12	96	12	96	y	0.05	5	91	5	91	y	0.08	14	155	14	155	y	0.07	10	137	10	137	y	0.07	10	139	10	139	y	ENSMUSG00000037971.11	1110032A03Rik	chr9	protein_coding	RIKEN cDNA 1110032A03 gene
known_NIR_20095	chr9	50675590	50679158	-	50675590;50676226	50675996;50679158	ES	ENSMUST00000042468.9	known	0.01	1	117.5	1	120;115	n	0.02	3	140.5	3	136;145	y	0.08	8	93.0	8	90;96	y	0.00	0	112.0	0	91;133	n	0.00	0	166.0	0	159;173	n	0.00	0	94.0	0	83;105	n	0.00	0	183.5	0	165;202	n	0.01	1	99.0	1	96;102	n	0.00	0	101.5	0	91;112	n	0.02	4	168.0	4	155;181	y	0.02	3	138.5	3	137;140	y	0.03	4	138.5	4	139;138	y	ENSMUSG00000037971.11	1110032A03Rik	chr9	protein_coding	RIKEN cDNA 1110032A03 gene
known_NIR_20096	chr9	50675590;50676226	50676065;50679158	-	50675590	50679158	cassetteExon	ENSMUST00000177546.8	known	0.98	62.5	1	10;115	1	n	0.96	79.0	3	13;145	3	y	0.87	51.5	8	7;96	8	y	1.00	72.5	0	12;133	0	n	1.00	96.0	0	19;173	0	n	1.00	60.0	0	15;105	0	n	1.00	110.0	0	18;202	0	n	0.98	57.0	1	12;102	1	n	1.00	58.5	0	5;112	0	n	0.96	97.5	4	14;181	4	y	0.96	75.0	3	10;140	3	y	0.95	74.0	4	10;138	4	y	ENSMUSG00000037971.11	1110032A03Rik	chr9	protein_coding	RIKEN cDNA 1110032A03 gene
known_NIR_20097	chr9	50675590;50676466	50675996;50679158	-	50675590	50679158	cassetteExon	ENSMUST00000177546.8	known	0.98	60.5	1	120;1	1	n	0.96	68.0	3	136;0	3	n	0.85	47.0	8	90;4	8	y	1.00	47.5	0	91;4	0	n	1.00	81.0	0	159;3	0	n	1.00	41.5	0	83;0	0	n	1.00	83.5	0	165;2	0	n	0.98	48.5	1	96;1	1	n	1.00	45.5	0	91;0	0	n	0.95	79.0	4	155;3	4	y	0.96	70.0	3	137;3	3	y	0.95	70.5	4	139;2	4	y	ENSMUSG00000037971.11	1110032A03Rik	chr9	protein_coding	RIKEN cDNA 1110032A03 gene
known_NIR_20098	chr9	50675590;50676466	50676065;50679158	-	50675590	50679158	cassetteExon	ENSMUST00000177546.8	known	0.85	5.5	1	10;1	1	n	0.68	6.5	3	13;0	3	n	0.41	5.5	8	7;4	8	y	1.00	8.0	0	12;4	0	n	1.00	11.0	0	19;3	0	n	1.00	7.5	0	15;0	0	n	1.00	10.0	0	18;2	0	n	0.87	6.5	1	12;1	1	n	1.00	2.5	0	5;0	0	n	0.68	8.5	4	14;3	4	y	0.68	6.5	3	10;3	3	y	0.60	6.0	4	10;2	4	y	ENSMUSG00000037971.11	1110032A03Rik	chr9	protein_coding	RIKEN cDNA 1110032A03 gene
known_NIR_20099	chr9	50676226	50679002	-	50676226	50679158	A5SS	ENSMUST00000042468.9	known	0.02	2	115	2	115	y	0.01	2	145	2	145	y	0.02	2	96	2	96	y	0.02	3	133	3	133	y	0.02	3	173	3	173	y	0.02	2	105	2	105	y	0.00	0	202	0	202	n	0.02	2	102	2	102	y	0.03	4	112	4	112	y	0.03	5	181	5	181	y	0.03	4	140	4	140	y	0.01	2	138	2	138	y	ENSMUSG00000037971.11	1110032A03Rik	chr9	protein_coding	RIKEN cDNA 1110032A03 gene
known_NIR_20100	chr9	50676226	50682101	-	50676226	50679158	5pMXE	ENSMUST00000042468.9	known	0.01	1	115	1	115	n	0.01	2	145	2	145	y	0.00	0	96	0	96	n	0.00	0	133	0	133	n	0.00	0	173	0	173	n	0.00	0	105	0	105	n	0.00	1	202	1	202	n	0.00	0	102	0	102	n	0.00	0	112	0	112	n	0.00	0	181	0	181	n	0.00	0	140	0	140	n	0.00	0	138	0	138	n	ENSMUSG00000037971.11	1110032A03Rik	chr9	protein_coding	RIKEN cDNA 1110032A03 gene
known_NIR_20101	chr9	50687283	50687844	+	50686818	50687844	A5SS	ENSMUST00000034561.11	known	0.00	0	31	0	31	n	0.08	1	12	1	12	n	0.02	1	45	1	45	n	0.04	1	24	1	24	n	0.04	1	23	1	23	n	0.00	0	26	0	26	n	0.11	2	16	2	16	y	0.00	0	25	0	25	n	0.00	0	16	0	16	n	0.04	1	23	1	23	n	0.13	4	26	4	26	y	0.00	0	25	0	25	n	ENSMUSG00000032059.14	Alg9	chr9	protein_coding	asparagine-linked glycosylation 9 (alpha 1,2 mannosyltransferase)
known_NIR_20102	chr9	50690404	50699453	+	50690404	50694558	3pMXE	ENSMUST00000162363.8	known	0.08	2	23	2	23	y	0.18	4	18	4	18	y	0.10	5	43	5	43	y	0.04	1	23	1	23	n	0.10	4	37	4	37	y	0.14	4	25	4	25	y	0.14	4	25	4	25	y	0.06	2	29	2	29	y	0.04	1	25	1	25	n	0.14	5	30	5	30	y	0.00	0	19	0	19	n	0.08	2	24	2	24	y	ENSMUSG00000032059.14	Alg9	chr9	protein_coding	asparagine-linked glycosylation 9 (alpha 1,2 mannosyltransferase)
known_NIR_20103	chr9	50690404	50699453	+	50690404;50694628	50694558;50699453	ES	ENSMUST00000034561.11	known	0.08	2	23.0	2	23;23	y	0.17	4	19.0	4	18;20	y	0.10	5	46.5	5	43;50	y	0.04	1	26.5	1	23;30	n	0.10	4	35.5	4	37;34	y	0.14	4	25.5	4	25;26	y	0.14	4	25.5	4	25;26	y	0.08	2	24.0	2	29;19	y	0.04	1	24.5	1	25;24	n	0.14	5	29.5	5	30;29	y	0.00	0	16.5	0	19;14	n	0.08	2	23.0	2	24;22	y	ENSMUSG00000032059.14	Alg9	chr9	protein_coding	asparagine-linked glycosylation 9 (alpha 1,2 mannosyltransferase)
known_NIR_20104	chr9	50720106	50754034	+	50720106;50734015	50733885;50754034	ES	ENSMUST00000034561.11	known	0.00	0	60.0	0	53;67	n	0.01	1	70.0	1	71;69	n	0.07	6	75.5	6	77;74	y	0.02	1	52.0	1	53;51	n	0.13	11	76.5	11	95;58	y	0.00	0	54.5	0	61;48	n	0.06	4	60.0	4	71;49	y	0.02	1	42.0	1	41;43	n	0.00	0	43.5	0	46;41	n	0.00	0	75.5	0	93;58	n	0.06	4	67.5	4	78;57	y	0.02	1	47.0	1	49;45	n	ENSMUSG00000032059.14	Alg9	chr9	protein_coding	asparagine-linked glycosylation 9 (alpha 1,2 mannosyltransferase)
known_NIR_20105	chr9	50746977	50754034	+	50734015	50754034	A5SS	ENSMUST00000034561.11	known	0.00	0	67	0	67	n	0.04	3	69	3	69	y	0.00	0	74	0	74	n	0.00	0	51	0	51	n	0.02	1	58	1	58	n	0.00	0	48	0	48	n	0.00	0	49	0	49	n	0.00	0	43	0	43	n	0.02	1	41	1	41	n	0.00	0	58	0	58	n	0.00	0	57	0	57	n	0.02	1	45	1	45	n	ENSMUSG00000032059.14	Alg9	chr9	protein_coding	asparagine-linked glycosylation 9 (alpha 1,2 mannosyltransferase)
known_NIR_20106	chr9	50768398	50769136	+	50756706	50769136	A5SS	ENSMUST00000174555.2	known	1.00	6	0	6	0	n	0.90	9	1	9	1	n	0.95	19	1	19	1	n	0.65	17	9	17	9	y	0.91	20	2	20	2	y	0.78	7	2	7	2	n	0.83	10	2	10	2	y	0.78	18	5	18	5	y	0.50	5	5	5	5	y	0.68	15	7	15	7	y	1.00	10	0	10	0	n	1.00	14	0	14	0	n	ENSMUSG00000032058.15	Ppp2r1b	chr9	protein_coding	protein phosphatase 2, regulatory subunit A, beta
known_NIR_20107	chr9	50790601	50791139	+	50790601	50794774	A3SS	ENSMUST00000174628.8	known	1.00	63	0	63	0	n	1.00	32	0	32	0	n	0.98	43	1	43	1	n	1.00	46	0	46	0	n	1.00	69	0	69	0	n	1.00	40	0	40	0	n	0.98	55	1	55	1	n	1.00	36	0	36	0	n	0.98	41	1	41	1	n	0.97	68	2	68	2	y	1.00	52	0	52	0	n	0.92	35	3	35	3	y	ENSMUSG00000032058.15	Ppp2r1b	chr9	protein_coding	protein phosphatase 2, regulatory subunit A, beta
known_NIR_20108	chr9	50804689	50806644	-	50805381	50806644	A3SS	ENSMUST00000176663.8	known	0.29	4	10	4	10	y	0.56	5	4	5	4	n	0.06	1	15	1	15	n	0.27	4	11	4	11	y	0.00	0	13	0	13	n	0.13	2	13	2	13	y	0.17	2	10	2	10	y	0.18	3	14	3	14	y	0.50	6	6	6	6	y	0.11	2	17	2	17	y	0.00	0	11	0	11	n	0.07	1	14	1	14	n	ENSMUSG00000037112.17	Sik2	chr9	protein_coding	salt inducible kinase 2
known_NIR_20109	chr9	51854949	51859877	-	51858497	51859877	3pMXE	ENSMUST00000214013.2	known	0.99	503	5	503	5	y	0.98	499	10	499	10	y	0.96	204	9	204	9	y	0.98	522	10	522	10	y	0.99	440	5	440	5	y	0.97	140	4	140	4	y	0.98	509	12	509	12	y	0.97	174	6	174	6	y	0.98	574	12	574	12	y	0.98	802	13	802	13	y	0.98	750	17	750	17	y	0.98	743	16	743	16	y	ENSMUSG00000032051.10	Fdx1	chr9	protein_coding	ferredoxin 1
known_NIR_20110	chr9	51854949;51858497	51858315;51859877	-	51854949	51859877	cassetteExon	ENSMUST00000034552.8	known	0.01	3.0	503	1;5	503	n	0.01	6.0	499	2;10	499	y	0.03	5.5	204	2;9	204	y	0.01	6.0	522	2;10	522	y	0.01	3.0	440	1;5	440	n	0.03	4.0	140	4;4	140	y	0.02	8.5	509	5;12	509	y	0.02	3.5	174	1;6	174	n	0.01	6.0	574	0;12	574	n	0.01	9.5	802	6;13	802	y	0.02	11.5	750	6;17	750	y	0.01	10.5	743	5;16	743	y	ENSMUSG00000032051.10	Fdx1	chr9	protein_coding	ferredoxin 1
known_NIR_20111	chr9	51984584	51986285	+	51984584	51992319	A3SS	ENSMUST00000163153.9	known	0.00	0	252	0	252	n	0.02	4	173	4	173	y	0.00	0	204	0	204	n	0.01	2	384	2	384	y	0.01	3	298	3	298	y	0.00	0	141	0	141	n	0.00	0	297	0	297	n	0.00	0	175	0	175	n	0.00	0	305	0	305	n	0.00	0	479	0	479	n	0.00	0	246	0	246	n	0.00	0	405	0	405	n	ENSMUSG00000032050.19	Rdx	chr9	protein_coding	radixin
known_NIR_20112	chr9	5321512	5323625	+	5321512;5322917	5322820;5323625	ES	ENSMUST00000162846.8	known	0.67	1	0.5	1	1;0	n	0.00	0	4.0	0	5;3	n	0.00	0	12.5	0	14;11	n	0.00	0	0.5	0	1;0	n	0.29	2	5.0	2	4;6	y	0.00	0	4.0	0	7;1	n	0.00	0	8.0	0	8;8	n	-	-	-	-	-	-	0.25	1	3.0	1	4;2	n	0.00	0	4.5	0	7;2	n	0.00	0	1.5	0	2;1	n	0.25	2	6.0	2	9;3	y	ENSMUSG00000033538.14	Casp4	chr9	protein_coding	caspase 4, apoptosis-related cysteine peptidase
known_NIR_20113	chr9	53566671;53569485	53569258;53569871	-	53566671	53569871	cassetteExon	ENSMUST00000166367.8	known	0.00	0.0	15	0;0	15	n	0.00	0.0	5	0;0	5	n	0.05	2.0	36	2;2	36	y	0.00	0.0	12	0;0	12	n	0.00	0.0	11	0;0	11	n	0.00	0.0	10	0;0	10	n	0.00	0.0	20	0;0	20	n	0.00	0.0	13	0;0	13	n	0.00	0.0	12	0;0	12	n	0.04	1.0	22	0;2	22	n	0.20	1.5	6	2;1	6	n	0.00	0.0	20	0;0	20	n	ENSMUSG00000032030.17	Cul5	chr9	protein_coding	cullin 5
known_NIR_20114	chr9	54303651	54305331	-	54303654	54305331	A3SS	ENSMUST00000118163.8	known	0.30	3	7	3	7	y	0.33	1	2	1	2	n	0.35	11	20	11	20	y	0.33	6	12	6	12	y	0.15	4	22	4	22	y	0.17	1	5	1	5	n	0.20	2	8	2	8	y	0.14	1	6	1	6	n	0.44	7	9	7	9	y	0.14	3	19	3	19	y	0.46	6	7	6	7	y	0.38	6	10	6	10	y	ENSMUSG00000041268.18	Dmxl2	chr9	protein_coding	Dmx-like 2
known_NIR_20115	chr9	54637940	54638671	-	54637945	54638671	A3SS	ENSMUST00000118771.8	known	0.08	11	122	11	122	y	0.09	11	115	11	115	y	0.11	16	129	16	129	y	0.03	6	202	6	202	y	0.05	12	220	12	220	y	0.04	4	101	4	101	y	0.07	14	185	14	185	y	0.06	6	98	6	98	y	0.04	6	143	6	143	y	0.08	18	201	18	201	y	0.06	10	148	10	148	y	0.06	16	242	16	242	y	ENSMUSG00000061559.16	Wdr61	chr9	protein_coding	WD repeat domain 61
known_NIR_20116	chr9	54638721	54641759	-	54638721	54641653	A5SS	ENSMUST00000118771.8	known	0.68	54	26	54	26	y	0.58	44	32	44	32	y	0.75	54	18	54	18	y	0.68	77	36	77	36	y	0.69	98	44	98	44	y	0.70	46	20	46	20	y	0.73	83	30	83	30	y	0.73	37	14	37	14	y	0.62	61	37	61	37	y	0.56	81	64	81	64	y	0.79	76	20	76	20	y	0.80	114	28	114	28	y	ENSMUSG00000061559.16	Wdr61	chr9	protein_coding	WD repeat domain 61
known_NIR_20117	chr9	54807856;54810523	54810464;54811175	+	54807856	54811175	cassetteExon	ENSMUST00000034843.9	known	0.00	0.0	52	0;0	52	n	0.00	0.0	47	0;0	47	n	0.00	0.0	114	0;0	114	n	0.00	0.0	104	0;0	104	n	0.00	0.0	111	0;0	111	n	0.00	0.0	57	0;0	57	n	0.00	0.0	99	0;0	99	n	0.00	0.0	53	0;0	53	n	0.00	0.0	71	0;0	71	n	0.02	2.5	105	2;3	105	y	0.00	0.0	73	0;0	73	n	0.00	0.0	153	0;0	153	n	ENSMUSG00000032293.9	Ireb2	chr9	protein_coding	iron responsive element binding protein 2
known_NIR_20118	chr9	54825142	54825531	+	54825142	54827758	A3SS	ENSMUST00000039742.8	known	0.06	2	31	2	31	y	0.00	0	22	0	22	n	0.00	0	10	0	10	n	0.06	3	47	3	47	y	0.00	0	50	0	50	n	0.00	0	7	0	7	n	0.10	3	28	3	28	y	0.00	0	27	0	27	n	0.04	1	24	1	24	n	0.07	4	51	4	51	y	0.00	0	31	0	31	n	0.02	1	47	1	47	n	ENSMUSG00000035878.14	Hykk	chr9	protein_coding	hydroxylysine kinase 1
known_NIR_20119	chr9	54829618	54837979	+	54829618	54844423	A3SS	ENSMUST00000039742.8	known	0.04	2	55	2	55	y	0.00	0	26	0	26	n	0.14	1	6	1	6	n	0.03	2	75	2	75	y	0.03	2	62	2	62	y	0.08	2	23	2	23	y	0.05	2	40	2	40	y	0.00	0	34	0	34	n	0.09	4	41	4	41	y	0.00	0	63	0	63	n	0.09	4	42	4	42	y	0.02	1	61	1	61	n	ENSMUSG00000035878.14	Hykk	chr9	protein_coding	hydroxylysine kinase 1
known_NIR_20120	chr9	54858187	54859366	+	54858712	54859366	5pMXE	ENSMUST00000171900.2	known	0.95	475	23	475	23	y	0.94	348	22	348	22	y	0.92	530	44	530	44	y	0.95	523	25	523	25	y	0.96	476	20	476	20	y	0.96	246	11	246	11	y	0.93	435	32	435	32	y	0.93	227	18	227	18	y	0.95	420	20	420	20	y	0.92	508	43	508	43	y	0.96	411	17	411	17	y	0.94	538	32	538	32	y	ENSMUSG00000032301.14	Psma4	chr9	protein_coding	proteasome subunit alpha 4
known_NIR_20121	chr9	54858187;54858712	54858628;54859366	+	54858187	54859366	cassetteExon	ENSMUST00000034848.14	known	0.03	14.5	475	6;23	475	y	0.03	12.5	348	3;22	348	y	0.06	36.5	530	29;44	530	y	0.03	13.5	523	2;25	523	y	0.03	15.0	476	10;20	476	y	0.04	9.5	246	8;11	246	y	0.05	20.5	435	9;32	435	y	0.04	10.0	227	2;18	227	y	0.03	11.5	420	3;20	420	y	0.04	23.0	508	3;43	508	y	0.03	11.5	411	6;17	411	y	0.03	19.5	538	7;32	538	y	ENSMUSG00000032301.14	Psma4	chr9	protein_coding	proteasome subunit alpha 4
known_NIR_20122	chr9	54859392	54859963	+	54859392;54859667	54859625;54859963	ES	ENSMUST00000034848.14	known	0.00	2	499.5	2	493;506	y	0.00	1	403.0	1	377;429	n	0.00	0	571.5	0	576;567	n	0.00	0	570.0	0	543;597	n	0.00	0	562.5	0	526;599	n	0.00	0	251.5	0	247;256	n	0.00	0	520.0	0	500;540	n	0.00	0	258.0	0	254;262	n	0.00	0	450.5	0	437;464	n	0.00	0	595.5	0	580;611	n	0.00	0	449.5	0	437;462	n	0.00	0	586.0	0	589;583	n	ENSMUSG00000032301.14	Psma4	chr9	protein_coding	proteasome subunit alpha 4
known_NIR_20123	chr9	54859392	54859963	+	54859667	54859963	A5SS	ENSMUST00000171578.8	known	0.00	2	506	2	506	y	0.00	1	429	1	429	n	0.00	0	567	0	567	n	0.00	0	597	0	597	n	0.00	0	599	0	599	n	0.00	0	256	0	256	n	0.00	0	540	0	540	n	0.00	0	262	0	262	n	0.00	0	464	0	464	n	0.00	0	611	0	611	n	0.00	0	462	0	462	n	0.00	0	583	0	583	n	ENSMUSG00000032301.14	Psma4	chr9	protein_coding	proteasome subunit alpha 4
known_NIR_20124	chr9	55057685	55070252	+	55057110	55070252	A5SS	ENSMUST00000059555.15	known	0.04	1	25	1	25	n	0.00	0	19	0	19	n	0.00	0	30	0	30	n	0.24	7	22	7	22	y	0.14	5	30	5	30	y	0.11	2	17	2	17	y	0.02	1	40	1	40	n	0.07	2	27	2	27	y	0.00	0	21	0	21	n	0.04	1	26	1	26	n	0.10	3	28	3	28	y	0.08	3	33	3	33	y	ENSMUSG00000032307.17	Ube2q2	chr9	protein_coding	ubiquitin-conjugating enzyme E2Q family member 2
known_NIR_20125	chr9	55070353	55083475	+	55070353;55075591	55075487;55083475	ES	ENSMUST00000059555.15	known	0.03	1	33.5	1	32;35	n	0.00	0	25.5	0	31;20	n	0.05	4	70.0	4	71;69	y	0.06	3	50.0	3	44;56	y	0.03	2	64.5	2	52;77	y	0.03	1	30.0	1	29;31	n	0.08	4	47.5	4	43;52	y	0.07	2	25.5	2	26;25	y	0.03	1	36.5	1	27;46	n	0.00	0	64.5	0	51;78	n	0.06	2	31.5	2	38;25	y	0.00	0	55.5	0	47;64	n	ENSMUSG00000032307.17	Ube2q2	chr9	protein_coding	ubiquitin-conjugating enzyme E2Q family member 2
known_NIR_20126	chr9	55121065	55121193	+	55116775	55121193	A5SS	ENSMUST00000034859.15	known	0.05	4	81	4	81	y	0.14	6	38	6	38	y	0.05	4	78	4	78	y	0.08	9	106	9	106	y	0.04	6	137	6	137	y	0.03	2	69	2	69	y	0.02	2	99	2	99	y	0.06	4	67	4	67	y	0.04	3	81	3	81	y	0.04	6	163	6	163	y	0.07	6	77	6	77	y	0.03	3	112	3	112	y	ENSMUSG00000032309.16	Fbxo22	chr9	protein_coding	F-box protein 22
known_NIR_20127	chr9	55122282	55125718	+	55122282	55125599	A3SS	ENSMUST00000034859.15	known	0.00	0	125	0	125	n	0.02	3	132	3	132	y	0.01	1	146	1	146	n	0.00	0	163	0	163	n	0.00	1	245	1	245	n	0.00	0	89	0	89	n	0.01	2	154	2	154	y	0.00	0	104	0	104	n	0.00	0	137	0	137	n	0.00	0	204	0	204	n	0.01	1	115	1	115	n	0.00	0	169	0	169	n	ENSMUSG00000032309.16	Fbxo22	chr9	protein_coding	F-box protein 22
known_NIR_20128	chr9	55132876	55133900	-	55128692	55133900	A3SS	ENSMUST00000139261.8	known	0.08	5	55	5	55	y	0.05	3	53	3	53	y	0.16	57	307	57	307	y	0.19	14	58	14	58	y	0.13	8	55	8	55	y	0.19	40	169	40	169	y	0.12	12	88	12	88	y	0.18	20	91	20	91	y	0.08	2	22	2	22	y	0.17	9	45	9	45	y	0.18	3	14	3	14	y	0.06	2	34	2	34	y	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
known_NIR_20129	chr9	55134000	55135137	-	55134038	55135137	A3SS	ENSMUST00000139261.8	known	0.35	21	39	21	39	y	0.14	7	43	7	43	y	0.23	82	276	82	276	y	0.12	8	58	8	58	y	0.23	23	77	23	77	y	0.24	56	178	56	178	y	0.23	26	85	26	85	y	0.22	23	83	23	83	y	0.27	4	11	4	11	y	0.29	16	39	16	39	y	0.24	7	22	7	22	y	0.22	14	51	14	51	y	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
known_NIR_20130	chr9	55143803;55146778	55146716;55149345	-	55143803	55149345	cassetteExon	ENSMUST00000139261.8	known	0.00	0.0	63	0;0	63	n	0.00	0.0	46	0;0	46	n	0.01	2.0	247	2;2	247	y	0.04	2.0	53	3;1	53	n	0.00	0.0	72	0;0	72	n	0.00	0.0	171	0;0	171	n	0.01	0.5	77	0;1	77	n	0.00	0.0	96	0;0	96	n	0.00	0.0	25	0;0	25	n	0.00	0.0	41	0;0	41	n	0.00	0.0	22	0;0	22	n	0.04	1.5	41	0;3	41	n	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
known_NIR_20131	chr9	55149491	55149664	-	55149491	55156380	A5SS	ENSMUST00000139261.8	known	0.09	2	20	2	20	y	0.00	0	24	0	24	n	0.07	6	76	6	76	y	0.15	3	17	3	17	y	0.00	0	37	0	37	n	0.00	0	75	0	75	n	0.05	2	36	2	36	y	0.03	1	36	1	36	n	0.00	0	7	0	7	n	0.20	2	8	2	8	y	0.00	0	5	0	5	n	0.00	0	14	0	14	n	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
known_NIR_20132	chr9	55149491	55149664	-	55149491	55188174	A5SS	ENSMUST00000164721.8	known	0.40	2	3	2	3	n	0.00	0	10	0	10	n	0.13	6	41	6	41	y	0.30	3	7	3	7	y	0.00	0	4	0	4	n	0.00	0	22	0	22	n	0.14	2	12	2	12	y	0.07	1	14	1	14	n	0.00	0	2	0	2	n	0.29	2	5	2	5	n	-	-	-	-	-	-	0.00	0	11	0	11	n	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
known_NIR_20133	chr9	55149491	55188174	-	55149491	55156380	A5SS&ES	ENSMUST00000126368.8	known	0.13	3	20	3	20	y	0.29	10	24	10	24	y	0.35	41	76	41	76	y	0.29	7	17	7	17	y	0.10	4	37	4	37	y	0.23	22	75	22	75	y	0.25	12	36	12	36	y	0.28	14	36	14	36	y	0.22	2	7	2	7	n	0.38	5	8	5	8	y	0.00	0	5	0	5	n	0.44	11	14	11	14	y	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
known_NIR_20134	chr9	55149491;55156453	55156380;55188174	-	55149491	55188174	cassetteExon	ENSMUST00000164721.8	known	0.81	12.5	3	20;5	3	y	0.61	15.5	10	24;7	10	y	0.54	49.0	41	76;22	41	y	0.60	10.5	7	17;4	7	y	0.84	21.0	4	37;5	4	y	0.67	44.5	22	75;14	22	y	0.65	22.5	12	36;9	12	y	0.63	24.0	14	36;12	14	y	0.69	4.5	2	7;2	2	y	0.62	8.0	5	8;8	5	y	1.00	3.0	0	5;1	0	n	0.41	7.5	11	14;1	11	n	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
known_NIR_20135	chr9	55149491;55188267	55188174;55189835	-	55149491;55156453	55156380;55189835	MXE	ENSMUST00000139261.8	known	0.25	5.5	16.5	3;8	20;13	y	0.31	8.0	17.5	10;6	24;11	y	0.47	51.0	58.0	41;61	76;40	y	0.38	8.5	14.0	7;10	17;11	y	0.22	7.5	26.5	4;11	37;16	y	0.37	31.0	52.0	22;40	75;29	y	0.39	15.5	24.5	12;19	36;13	y	0.35	14.5	27.5	14;15	36;19	y	0.33	2.5	5.0	2;3	7;3	y	0.59	8.0	5.5	5;11	8;3	y	0.33	1.5	3.0	0;3	5;1	n	0.43	6.0	8.0	11;1	14;2	n	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
known_NIR_20136	chr9	55156453	55165761	-	55156453	55188174	A5SS	ENSMUST00000137675.8	known	0.38	3	5	3	5	n	0.00	0	7	0	7	n	0.51	23	22	23	22	y	0.00	0	4	0	4	n	0.67	10	5	10	5	y	0.58	19	14	19	14	y	0.25	3	9	3	9	y	0.43	9	12	9	12	y	0.50	2	2	2	2	n	0.20	2	8	2	8	y	0.00	0	1	0	1	n	0.67	2	1	2	1	n	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
known_NIR_20137	chr9	55156453	55189835	-	55156453	55188174	A5SS&ES	ENSMUST00000137675.8	known	0.72	13	5	13	5	y	0.61	11	7	11	7	y	0.65	40	22	40	22	y	0.73	11	4	11	4	y	0.76	16	5	16	5	y	0.67	29	14	29	14	y	0.59	13	9	13	9	y	0.61	19	12	19	12	y	0.60	3	2	3	2	n	0.27	3	8	3	8	y	0.50	1	1	1	1	n	0.67	2	1	2	1	n	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
known_NIR_20138	chr9	55156453;55165908	55165761;55189835	-	55156453	55189835	cassetteExon	ENSMUST00000139261.8	known	0.10	1.5	13	3;0	13	n	0.00	0.0	11	0;0	11	n	0.30	17.0	40	23;11	40	y	0.00	0.0	11	0;0	11	n	0.24	5.0	16	10;0	16	n	0.28	11.0	29	19;3	29	y	0.10	1.5	13	3;0	13	n	0.19	4.5	19	9;0	19	n	0.33	1.5	3	2;1	3	n	0.25	1.0	3	2;0	3	n	0.00	0.0	1	0;0	1	n	0.33	1.0	2	2;0	2	n	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
known_NIR_20139	chr9	55156453;55188267	55188174;55189835	-	55156453	55189835	cassetteExon	ENSMUST00000139261.8	known	0.33	6.5	13	5;8	13	y	0.37	6.5	11	7;6	11	y	0.51	41.5	40	22;61	40	y	0.39	7.0	11	4;10	11	y	0.33	8.0	16	5;11	16	y	0.48	27.0	29	14;40	29	y	0.52	14.0	13	9;19	13	y	0.42	13.5	19	12;15	19	y	0.45	2.5	3	2;3	3	n	0.76	9.5	3	8;11	3	y	0.67	2.0	1	1;3	1	n	0.33	1.0	2	1;1	2	n	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
known_NIR_20140	chr9	55156453;55188267	55188174;55189835	-	55156453;55165908	55165761;55189835	MXE	ENSMUST00000128020.2	known	0.81	6.5	1.5	5;8	3;0	n	1.00	6.5	0.0	7;6	0;0	n	0.71	41.5	17.0	22;61	23;11	y	1.00	7.0	0.0	4;10	0;0	n	0.62	8.0	5.0	5;11	10;0	n	0.71	27.0	11.0	14;40	19;3	y	0.90	14.0	1.5	9;19	3;0	n	0.75	13.5	4.5	12;15	9;0	n	0.62	2.5	1.5	2;3	2;1	n	0.90	9.5	1.0	8;11	2;0	n	1.00	2.0	0.0	1;3	0;0	n	0.50	1.0	1.0	1;1	2;0	n	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
known_NIR_20141	chr9	55165908	55166656	-	55165908	55189835	A5SS	ENSMUST00000128020.2	known	1.00	2	0	2	0	n	1.00	3	0	3	0	n	0.62	18	11	18	11	y	-	-	-	-	-	-	-	-	-	-	-	-	0.88	21	3	21	3	y	1.00	7	0	7	0	n	1.00	8	0	8	0	n	0.67	2	1	2	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	n	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
known_NIR_20142	chr9	55165908	55189835	-	55188267	55189835	A3SS&ES	ENSMUST00000164721.8	known	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.15	11	61	11	61	y	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.07	3	40	3	40	y	0.00	0	19	0	19	n	0.00	0	15	0	15	n	0.25	1	3	1	3	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
known_NIR_20143	chr9	55166764	55188174	-	55149491	55188174	A3SS	ENSMUST00000164721.8	known	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.15	7	41	7	41	y	0.30	3	7	3	7	y	0.00	0	4	0	4	n	0.04	1	22	1	22	n	0.20	3	12	3	12	y	0.18	3	14	3	14	y	0.00	0	2	0	2	n	0.17	1	5	1	5	n	-	-	-	-	-	-	0.15	2	11	2	11	y	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
known_NIR_20144	chr9	55166764	55188174	-	55156453	55188174	A3SS	ENSMUST00000137675.8	known	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.24	7	22	7	22	y	0.43	3	4	3	4	n	0.00	0	5	0	5	n	0.07	1	14	1	14	n	0.25	3	9	3	9	y	0.20	3	12	3	12	y	0.00	0	2	0	2	n	0.11	1	8	1	8	n	0.00	0	1	0	1	n	0.67	2	1	2	1	n	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
known_NIR_20145	chr9	55188267	55189825	-	55188267	55189835	A5SS	ENSMUST00000164721.8	known	0.00	0	8	0	8	n	0.33	3	6	3	6	n	0.20	15	61	15	61	y	0.33	5	10	5	10	y	0.08	1	11	1	11	n	0.22	11	40	11	40	y	0.05	1	19	1	19	n	0.21	4	15	4	15	y	0.00	0	3	0	3	n	0.21	3	11	3	11	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
known_NIR_20146	chr9	55189900	55226877	-	55189900	55190781	5pMXE	ENSMUST00000139261.8	known	0.00	0	48	0	48	n	0.00	0	29	0	29	n	0.00	0	214	0	214	n	0.00	0	30	0	30	n	0.00	0	48	0	48	n	0.00	0	117	0	117	n	0.00	0	74	0	74	n	0.00	0	58	0	58	n	0.00	0	21	0	21	n	0.00	0	16	0	16	n	0.08	1	12	1	12	n	0.07	2	28	2	28	y	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
known_NIR_20147	chr9	55381939	55389557	-	55372143	55389557	A3SS	ENSMUST00000034866.9	known	0.04	48	1111	48	1111	y	0.05	57	1131	57	1131	y	0.05	37	746	37	746	y	0.04	44	1086	44	1086	y	0.04	54	1244	54	1244	y	0.04	16	437	16	437	y	0.00	0	1482	0	1482	n	0.03	15	533	15	533	y	0.00	0	1111	0	1111	n	0.04	65	1671	65	1671	y	0.03	47	1398	47	1398	y	0.04	70	1516	70	1516	y	ENSMUSG00000032314.15	Etfa	chr9	protein_coding	electron transferring flavoprotein, alpha polypeptide
known_NIR_20148	chr9	55407448	55418931	-	55407448	55408276	A5SS&ES	ENSMUST00000153186.8	known	1.00	11	0	11	0	n	0.60	6	4	6	4	y	0.60	6	4	6	4	y	0.88	7	1	7	1	n	0.52	13	12	13	12	y	0.83	5	1	5	1	n	0.54	13	11	13	11	y	0.82	9	2	9	2	y	0.67	4	2	4	2	n	0.50	10	10	10	10	y	0.78	14	4	14	4	y	0.58	11	8	11	8	y	ENSMUSG00000032314.15	Etfa	chr9	protein_coding	electron transferring flavoprotein, alpha polypeptide
known_NIR_20149	chr9	55407448	55418931	-	55407448	55419315	A5SS	ENSMUST00000034866.9	known	0.02	11	500	11	500	y	0.01	6	471	6	471	y	0.02	6	388	6	388	y	0.01	7	663	7	663	y	0.02	13	737	13	737	y	0.02	5	292	5	292	y	0.02	13	731	13	731	y	0.02	9	366	9	366	y	0.01	4	538	4	538	y	0.01	10	956	10	956	y	0.02	14	619	14	619	y	0.01	11	830	11	830	y	ENSMUSG00000032314.15	Etfa	chr9	protein_coding	electron transferring flavoprotein, alpha polypeptide
known_NIR_20150	chr9	55407448;55408430	55408276;55419315	-	55407448	55419315	cassetteExon	ENSMUST00000034866.9	known	0.00	0.5	500	0;1	500	n	0.01	3.0	471	4;2	471	y	0.01	3.0	388	4;2	388	y	0.00	2.0	663	1;3	663	n	0.01	9.0	737	12;6	737	y	0.01	2.0	292	1;3	292	n	0.01	7.5	731	11;4	731	y	0.00	1.5	366	2;1	366	n	0.01	3.0	538	2;4	538	y	0.01	8.0	956	10;6	956	y	0.01	4.5	619	4;5	619	y	0.01	5.5	830	8;3	830	y	ENSMUSG00000032314.15	Etfa	chr9	protein_coding	electron transferring flavoprotein, alpha polypeptide
known_NIR_20151	chr9	55949964	55960191	+	55949964;55952612	55952416;55960191	ES	ENSMUST00000147842.2	known	0.05	1	18.5	1	17;20	n	0.00	0	12.5	0	11;14	n	0.05	3	53.0	3	52;54	y	0.00	0	26.5	0	32;21	n	0.00	0	31.0	0	38;24	n	0.00	0	22.0	0	24;20	n	0.00	0	36.0	0	37;35	n	0.08	2	24.5	2	26;23	y	0.00	0	21.0	0	24;18	n	0.03	1	31.0	1	33;29	n	0.07	1	14.0	1	13;15	n	0.00	0	29.0	0	40;18	n	ENSMUSG00000032320.8	Rcn2	chr9	protein_coding	reticulocalbin 2
known_NIR_20152	chr9	56902940	56903766	+	56902940	56927188	A3SS	ENSMUST00000034832.8	known	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.00	0	20	0	20	n	0.00	0	12	0	12	n	0.06	1	16	1	16	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.13	2	13	2	13	y	ENSMUSG00000032290.8	Ptpn9	chr9	protein_coding	protein tyrosine phosphatase, non-receptor type 9
known_NIR_20153	chr9	56983914	56993865	+	56983914;56988486	56988379;56993865	ES	ENSMUST00000168678.8	known	0.25	2	6.0	2	4;8	y	0.29	2	5.0	2	5;5	y	0.21	2	7.5	2	3;12	y	0.00	0	8.5	0	5;12	n	0.32	5	10.5	5	7;14	y	0.00	0	5.5	0	2;9	n	0.48	6	6.5	6	2;11	y	0.45	7	8.5	7	2;15	y	0.00	0	8.0	0	3;13	n	0.24	2	6.5	2	3;10	y	0.40	1	1.5	1	2;1	n	0.31	2	4.5	2	3;6	y	ENSMUSG00000042557.15	Sin3a	chr9	protein_coding	transcriptional regulator, SIN3A (yeast)
known_NIR_20154	chr9	56983914	56993865	+	56988486	56993865	A5SS&ES	ENSMUST00000167715.8	known	0.20	2	8	2	8	y	0.29	2	5	2	5	n	0.14	2	12	2	12	y	0.00	0	12	0	12	n	0.26	5	14	5	14	y	0.00	0	9	0	9	n	0.35	6	11	6	11	y	0.32	7	15	7	15	y	0.00	0	13	0	13	n	0.17	2	10	2	10	y	0.50	1	1	1	1	n	0.25	2	6	2	6	n	ENSMUSG00000042557.15	Sin3a	chr9	protein_coding	transcriptional regulator, SIN3A (yeast)
known_NIR_20155	chr9	56988486	56993865	+	56979347	56993865	A5SS	ENSMUST00000169879.8	known	1.00	8	0	8	0	n	1.00	5	0	5	0	n	1.00	12	0	12	0	n	0.75	12	4	12	4	y	0.93	14	1	14	1	n	0.90	9	1	9	1	n	1.00	11	0	11	0	n	1.00	15	0	15	0	n	0.87	13	2	13	2	y	0.77	10	3	10	3	y	1.00	1	0	1	0	n	1.00	6	0	6	0	n	ENSMUSG00000042557.15	Sin3a	chr9	protein_coding	transcriptional regulator, SIN3A (yeast)
known_NIR_20156	chr9	57025455	57026377	+	57025446	57026377	A5SS	ENSMUST00000167715.8	known	0.12	4	30	4	30	y	0.03	1	28	1	28	n	0.04	2	53	2	53	y	0.02	1	41	1	41	n	0.08	5	54	5	54	y	0.10	4	37	4	37	y	0.05	2	39	2	39	y	0.09	3	31	3	31	y	0.09	3	29	3	29	y	0.05	2	41	2	41	y	0.07	2	25	2	25	y	0.02	1	52	1	52	n	ENSMUSG00000042557.15	Sin3a	chr9	protein_coding	transcriptional regulator, SIN3A (yeast)
known_NIR_20157	chr9	57038542	57038816	+	57038565	57038816	A5SS	ENSMUST00000160147.8	known	0.00	0	11	0	11	n	0.06	1	15	1	15	n	0.03	1	28	1	28	n	0.04	1	25	1	25	n	0.00	0	36	0	36	n	0.05	1	20	1	20	n	0.00	0	30	0	30	n	0.00	0	11	0	11	n	0.00	0	18	0	18	n	0.07	2	26	2	26	y	0.00	0	15	0	15	n	0.00	0	19	0	19	n	ENSMUSG00000032295.16	Man2c1	chr9	protein_coding	mannosidase, alpha, class 2C, member 1
known_NIR_20158	chr9	57040876	57042374	+	57040876	57041417	3pMXE	ENSMUST00000161393.8	known	1.00	21	0	21	0	n	1.00	16	0	16	0	n	0.91	30	3	30	3	y	1.00	31	0	31	0	n	1.00	29	0	29	0	n	0.92	11	1	11	1	n	1.00	17	0	17	0	n	1.00	14	0	14	0	n	1.00	19	0	19	0	n	1.00	31	0	31	0	n	0.93	27	2	27	2	y	0.96	24	1	24	1	n	ENSMUSG00000032295.16	Man2c1	chr9	protein_coding	mannosidase, alpha, class 2C, member 1
known_NIR_20159	chr9	57042918	57043977	+	57042918	57043524	A3SS	ENSMUST00000161338.2	known	0.86	19	3	19	3	y	0.89	25	3	25	3	y	1.00	21	0	21	0	n	1.00	33	0	33	0	n	1.00	33	0	33	0	n	1.00	27	0	27	0	n	1.00	28	0	28	0	n	1.00	18	0	18	0	n	0.80	16	4	16	4	y	1.00	51	0	51	0	n	0.87	27	4	27	4	y	0.97	33	1	33	1	n	ENSMUSG00000032295.16	Man2c1	chr9	protein_coding	mannosidase, alpha, class 2C, member 1
known_NIR_20160	chr9	57042918;57043609	57043487;57043977	+	57042918	57043977	cassetteExon	ENSMUST00000160147.8	known	0.05	1.0	19	1;1	19	n	0.00	0.0	25	0;0	25	n	0.02	0.5	21	0;1	21	n	0.08	3.0	33	2;4	33	y	0.06	2.0	33	2;2	33	y	0.04	1.0	27	0;2	27	n	0.07	2.0	28	4;0	28	n	0.08	1.5	18	2;1	18	n	0.22	4.5	16	2;7	16	y	0.02	1.0	51	0;2	51	n	0.02	0.5	27	0;1	27	n	0.01	0.5	33	1;0	33	n	ENSMUSG00000032295.16	Man2c1	chr9	protein_coding	mannosidase, alpha, class 2C, member 1
known_NIR_20161	chr9	57042918;57043609	57043524;57043977	+	57042918	57043977	cassetteExon	ENSMUST00000160147.8	known	0.10	2.0	19	3;1	19	n	0.06	1.5	25	3;0	25	n	0.02	0.5	21	0;1	21	n	0.06	2.0	33	0;4	33	n	0.03	1.0	33	0;2	33	n	0.04	1.0	27	0;2	27	n	0.00	0.0	28	0;0	28	n	0.03	0.5	18	0;1	18	n	0.26	5.5	16	4;7	16	y	0.02	1.0	51	0;2	51	n	0.08	2.5	27	4;1	27	n	0.01	0.5	33	1;0	33	n	ENSMUSG00000032295.16	Man2c1	chr9	protein_coding	mannosidase, alpha, class 2C, member 1
known_NIR_20162	chr9	57045804	57046138	+	57045804	57046132	A3SS	ENSMUST00000160147.8	known	0.00	0	48	0	48	n	0.07	3	38	3	38	y	0.00	0	52	0	52	n	0.00	0	51	0	51	n	0.01	1	66	1	66	n	0.00	0	36	0	36	n	0.00	0	58	0	58	n	0.00	0	34	0	34	n	0.00	0	48	0	48	n	0.00	0	44	0	44	n	0.00	0	41	0	41	n	0.00	0	53	0	53	n	ENSMUSG00000032295.16	Man2c1	chr9	protein_coding	mannosidase, alpha, class 2C, member 1
known_NIR_20163	chr9	57045804	57046353	+	57045804;57046253	57046132;57046353	ES	ENSMUST00000160147.8	known	0.03	1	38.5	1	48;29	n	0.08	3	33.0	3	38;28	y	0.05	2	42.0	2	52;32	y	0.03	1	35.5	1	51;20	n	0.00	0	59.0	0	66;52	n	0.03	1	30.0	1	36;24	n	0.04	2	48.0	2	58;38	y	0.00	0	28.5	0	34;23	n	0.02	1	40.0	1	48;32	n	0.07	3	42.5	3	44;41	y	0.00	0	39.5	0	41;38	n	0.00	0	49.5	0	53;46	n	ENSMUSG00000032295.16	Man2c1	chr9	protein_coding	mannosidase, alpha, class 2C, member 1
known_NIR_20164	chr9	57045804	57046353	+	57045804;57046253	57046138;57046353	ES	ENSMUST00000034836.16	known	0.06	1	14.5	1	0;29	n	0.16	3	15.5	3	3;28	y	0.11	2	16.0	2	0;32	n	0.09	1	10.0	1	0;20	n	0.00	0	26.5	0	1;52	n	0.08	1	12.0	1	0;24	n	0.10	2	19.0	2	0;38	n	0.00	0	11.5	0	0;23	n	0.06	1	16.0	1	0;32	n	0.13	3	20.5	3	0;41	n	0.00	0	19.0	0	0;38	n	0.00	0	23.0	0	0;46	n	ENSMUSG00000032295.16	Man2c1	chr9	protein_coding	mannosidase, alpha, class 2C, member 1
known_NIR_20165	chr9	57045804	57046353	+	57046253	57046353	5pMXE	ENSMUST00000159402.2	known	0.03	1	29	1	29	n	0.10	3	28	3	28	y	0.06	2	32	2	32	y	0.05	1	20	1	20	n	0.00	0	52	0	52	n	0.04	1	24	1	24	n	0.05	2	38	2	38	y	0.00	0	23	0	23	n	0.03	1	32	1	32	n	0.07	3	41	3	41	y	0.00	0	38	0	38	n	0.00	0	46	0	46	n	ENSMUSG00000032295.16	Man2c1	chr9	protein_coding	mannosidase, alpha, class 2C, member 1
known_NIR_20166	chr9	57046685	57046972	+	57046685	57046895	A3SS	ENSMUST00000160147.8	known	0.03	1	38	1	38	n	0.03	1	33	1	33	n	0.00	0	25	0	25	n	0.03	1	33	1	33	n	0.00	0	53	0	53	n	0.05	1	20	1	20	n	0.00	0	32	0	32	n	0.00	0	23	0	23	n	0.00	0	34	0	34	n	0.02	1	45	1	45	n	0.03	1	37	1	37	n	0.05	2	38	2	38	y	ENSMUSG00000032295.16	Man2c1	chr9	protein_coding	mannosidase, alpha, class 2C, member 1
known_NIR_20167	chr9	57046992	57047483	+	57046992	57047154	3pMXE	ENSMUST00000159402.2	known	0.00	0	34	0	34	n	0.00	0	22	0	22	n	0.00	0	33	0	33	n	0.00	0	16	0	16	n	0.00	0	57	0	57	n	0.00	0	17	0	17	n	0.00	0	42	0	42	n	0.05	1	21	1	21	n	0.00	0	36	0	36	n	0.06	3	50	3	50	y	0.03	1	31	1	31	n	0.00	0	41	0	41	n	ENSMUSG00000032295.16	Man2c1	chr9	protein_coding	mannosidase, alpha, class 2C, member 1
known_NIR_20168	chr9	57046992	57047483	+	57046992;57047248	57047154;57047483	ES	ENSMUST00000160147.8	known	0.00	0	44.5	0	34;55	n	0.00	0	32.5	0	22;43	n	0.00	0	39.0	0	33;45	n	0.00	0	25.0	0	16;34	n	0.00	0	70.5	0	57;84	n	0.00	0	25.5	0	17;34	n	0.00	0	52.5	0	42;63	n	0.03	1	32.0	1	21;43	n	0.00	0	36.0	0	36;36	n	0.05	3	54.0	3	50;58	y	0.02	1	45.0	1	31;59	n	0.00	0	53.0	0	41;65	n	ENSMUSG00000032295.16	Man2c1	chr9	protein_coding	mannosidase, alpha, class 2C, member 1
known_NIR_20169	chr9	57046992	57047483	+	57047248	57047483	A5SS	ENSMUST00000159843.8	known	0.00	0	55	0	55	n	0.00	0	43	0	43	n	0.00	0	45	0	45	n	0.00	0	34	0	34	n	0.00	0	84	0	84	n	0.00	0	34	0	34	n	0.00	0	63	0	63	n	0.02	1	43	1	43	n	0.00	0	36	0	36	n	0.05	3	58	3	58	y	0.02	1	59	1	59	n	0.00	0	65	0	65	n	ENSMUSG00000032295.16	Man2c1	chr9	protein_coding	mannosidase, alpha, class 2C, member 1
known_NIR_20170	chr9	57063295	57063456	-	57063266	57063456	A3SS	ENSMUST00000214072.2	known	0.07	11	138	11	138	y	0.05	7	143	7	143	y	0.07	9	114	9	114	y	0.04	6	162	6	162	y	0.04	6	141	6	141	y	0.04	4	100	4	100	y	0.04	7	150	7	150	y	0.02	2	86	2	86	y	0.05	6	119	6	119	y	0.03	5	178	5	178	y	0.02	4	168	4	168	y	0.02	3	131	3	131	y	ENSMUSG00000032299.11	Commd4	chr9	protein_coding	COMM domain containing 4
known_NIR_20171	chr9	57063348	57063456	-	57063266	57063456	A3SS	ENSMUST00000214072.2	known	0.00	0	138	0	138	n	0.00	0	143	0	143	n	0.00	0	114	0	114	n	0.00	0	162	0	162	n	0.00	0	141	0	141	n	0.00	0	100	0	100	n	0.00	0	150	0	150	n	0.00	0	86	0	86	n	0.01	1	119	1	119	n	0.02	3	178	3	178	y	0.00	0	168	0	168	n	0.00	0	131	0	131	n	ENSMUSG00000032299.11	Commd4	chr9	protein_coding	COMM domain containing 4
known_NIR_20172	chr9	57063839	57064034	-	57063839	57064059	A5SS	ENSMUST00000215500.2	known	0.01	1	92	1	92	n	0.00	0	105	0	105	n	0.00	0	96	0	96	n	0.00	0	100	0	100	n	0.00	0	114	0	114	n	0.04	3	73	3	73	y	0.01	2	140	2	140	y	0.02	1	64	1	64	n	0.00	0	100	0	100	n	0.02	2	128	2	128	y	0.01	1	88	1	88	n	0.02	2	116	2	116	y	ENSMUSG00000032299.11	Commd4	chr9	protein_coding	COMM domain containing 4
known_NIR_20173	chr9	57063839	57064351	-	57063839	57064059	5pMXE	ENSMUST00000215500.2	known	0.00	0	92	0	92	n	0.00	0	105	0	105	n	0.00	0	96	0	96	n	0.00	0	100	0	100	n	0.01	1	114	1	114	n	0.00	0	73	0	73	n	0.01	2	140	2	140	y	0.02	1	64	1	64	n	0.00	0	100	0	100	n	0.02	2	128	2	128	y	0.00	0	88	0	88	n	0.00	0	116	0	116	n	ENSMUSG00000032299.11	Commd4	chr9	protein_coding	COMM domain containing 4
known_NIR_20174	chr9	57063839	57064351	-	57063839;57064124	57064059;57064351	ES	ENSMUST00000214072.2	known	0.00	0	109.0	0	92;126	n	0.00	0	120.0	0	105;135	n	0.00	0	106.0	0	96;116	n	0.00	0	113.0	0	100;126	n	0.01	1	127.5	1	114;141	n	0.00	0	74.0	0	73;75	n	0.01	2	154.0	2	140;168	y	0.01	1	77.0	1	64;90	n	0.00	0	109.0	0	100;118	n	0.01	2	149.5	2	128;171	y	0.00	0	98.0	0	88;108	n	0.00	0	123.0	0	116;130	n	ENSMUSG00000032299.11	Commd4	chr9	protein_coding	COMM domain containing 4
known_NIR_20175	chr9	57063839;57064124	57064034;57064351	-	57063839	57064351	cassetteExon	ENSMUST00000214097.2	known	1.00	63.5	0	1;126	0	n	1.00	67.5	0	0;135	0	n	1.00	58.0	0	0;116	0	n	1.00	63.0	0	0;126	0	n	0.99	70.5	1	0;141	1	n	1.00	39.0	0	3;75	0	n	0.98	85.0	2	2;168	2	y	0.98	45.5	1	1;90	1	n	1.00	59.0	0	0;118	0	n	0.98	86.5	2	2;171	2	y	1.00	54.5	0	1;108	0	n	1.00	66.0	0	2;130	0	n	ENSMUSG00000032299.11	Commd4	chr9	protein_coding	COMM domain containing 4
known_NIR_20176	chr9	57161612	57163669	-	57161612	57169712	A5SS	ENSMUST00000214583.2	known	1.00	13	0	13	0	n	0.82	14	3	14	3	y	0.86	50	8	50	8	y	0.94	15	1	15	1	n	0.88	23	3	23	3	y	0.85	11	2	11	2	y	0.78	14	4	14	4	y	0.78	7	2	7	2	n	0.81	13	3	13	3	y	1.00	11	0	11	0	n	0.93	13	1	13	1	n	1.00	16	0	16	0	n	ENSMUSG00000032300.8	1700017B05Rik	chr9	protein_coding	RIKEN cDNA 1700017B05 gene
known_NIR_20177	chr9	57161612	57169712	-	57161612;57166423	57163669;57169712	ES	ENSMUST00000034846.7	known	0.00	0	10.0	0	13;7	n	0.27	3	8.0	3	14;2	y	0.18	8	35.5	8	50;21	y	0.08	1	12.0	1	15;9	n	0.17	3	15.0	3	23;7	y	0.21	2	7.5	2	11;4	y	0.28	4	10.5	4	14;7	y	0.20	2	8.0	2	7;9	y	0.27	3	8.0	3	13;3	y	0.00	0	8.5	0	11;6	n	0.12	1	7.0	1	13;1	n	0.00	0	14.5	0	16;13	n	ENSMUSG00000032300.8	1700017B05Rik	chr9	protein_coding	RIKEN cDNA 1700017B05 gene
known_NIR_20178	chr9	57161612	57169712	-	57166423	57169712	3pMXE	ENSMUST00000213199.2	known	0.00	0	7	0	7	n	0.60	3	2	3	2	n	0.28	8	21	8	21	y	0.10	1	9	1	9	n	0.30	3	7	3	7	y	0.33	2	4	2	4	n	0.36	4	7	4	7	y	0.18	2	9	2	9	y	0.50	3	3	3	3	n	0.00	0	6	0	6	n	0.50	1	1	1	1	n	0.00	0	13	0	13	n	ENSMUSG00000032300.8	1700017B05Rik	chr9	protein_coding	RIKEN cDNA 1700017B05 gene
known_NIR_20179	chr9	57166423	57168504	-	57166423	57169712	A5SS	ENSMUST00000034846.7	known	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.12	3	21	3	21	y	0.00	0	9	0	9	n	0.30	3	7	3	7	y	0.00	0	4	0	4	n	0.36	4	7	4	7	y	0.00	0	9	0	9	n	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	13	0	13	n	ENSMUSG00000032300.8	1700017B05Rik	chr9	protein_coding	RIKEN cDNA 1700017B05 gene
known_NIR_20180	chr9	57322009	57342186	-	57328504	57342186	A3SS&ES	ENSMUST00000215961.2	known	0.02	1	41	1	41	n	0.00	0	26	0	26	n	0.00	0	27	0	27	n	0.00	0	52	0	52	n	0.00	0	61	0	61	n	0.00	0	26	0	26	n	0.00	0	52	0	52	n	0.00	0	27	0	27	n	0.00	0	29	0	29	n	0.00	0	51	0	51	n	0.04	2	48	2	48	y	0.00	0	27	0	27	n	ENSMUSG00000063849.7	Ppcdc	chr9	protein_coding	phosphopantothenoylcysteine decarboxylase
known_NIR_20181	chr9	57322537	57342186	-	57328504	57342186	A3SS&ES	ENSMUST00000215961.2	known	0.00	0	41	0	41	n	0.07	2	26	2	26	y	0.04	1	27	1	27	n	0.00	0	52	0	52	n	0.00	0	61	0	61	n	0.00	0	26	0	26	n	0.02	1	52	1	52	n	0.16	5	27	5	27	y	0.03	1	29	1	29	n	0.06	3	51	3	51	y	0.00	0	48	0	48	n	0.13	4	27	4	27	y	ENSMUSG00000063849.7	Ppcdc	chr9	protein_coding	phosphopantothenoylcysteine decarboxylase
known_NIR_20182	chr9	57322755	57327446	-	57322537	57327446	A3SS	ENSMUST00000085709.6	known	0.50	11	11	11	11	y	0.53	16	14	16	14	y	0.70	28	12	28	12	y	0.44	16	20	16	20	y	0.72	38	15	38	15	y	0.76	13	4	13	4	y	0.54	25	21	25	21	y	0.77	24	7	24	7	y	0.64	23	13	23	13	y	0.58	26	19	26	19	y	0.58	25	18	25	18	y	0.68	30	14	30	14	y	ENSMUSG00000063849.7	Ppcdc	chr9	protein_coding	phosphopantothenoylcysteine decarboxylase
known_NIR_20183	chr9	57344765;57346645	57346397;57347353	-	57344765	57347353	cassetteExon	ENSMUST00000214144.2	known	0.77	10.0	3	16;4	3	y	0.11	1.5	12	3;0	12	n	0.45	9.0	11	14;4	11	y	0.35	6.5	12	10;3	12	y	0.53	9.0	8	13;5	8	y	0.75	6.0	2	12;0	2	n	0.52	11.0	10	14;8	10	y	0.45	5.0	6	10;0	6	n	0.60	6.0	4	10;2	4	y	0.45	9.0	11	16;2	11	y	0.56	11.5	9	16;7	9	y	0.44	8.5	11	14;3	11	y	ENSMUSG00000063849.7	Ppcdc	chr9	protein_coding	phosphopantothenoylcysteine decarboxylase
known_NIR_20184	chr9	57353456	57358639	-	57353456	57354360	5pMXE	ENSMUST00000215208.2	known	0.06	2	33	2	33	y	0.04	1	25	1	25	n	0.09	3	30	3	30	y	0.03	1	36	1	36	n	0.13	6	39	6	39	y	0.03	1	35	1	35	n	0.00	0	41	0	41	n	0.04	1	25	1	25	n	0.00	0	36	0	36	n	0.03	1	36	1	36	n	0.00	0	28	0	28	n	0.00	0	29	0	29	n	ENSMUSG00000040722.8	Scamp5	chr9	protein_coding	secretory carrier membrane protein 5
known_NIR_20185	chr9	57353456	57358639	-	57353456;57354516	57354360;57358639	ES	ENSMUST00000046587.8	known	0.07	2	25.0	2	33;17	y	0.04	1	22.0	1	25;19	n	0.08	3	35.0	3	30;40	y	0.03	1	31.0	1	36;26	n	0.15	6	35.0	6	39;31	y	0.03	1	35.0	1	35;35	n	0.00	0	33.5	0	41;26	n	0.04	1	23.0	1	25;21	n	0.00	0	26.5	0	36;17	n	0.03	1	28.0	1	36;20	n	0.00	0	21.0	0	28;14	n	0.00	0	27.5	0	29;26	n	ENSMUSG00000040722.8	Scamp5	chr9	protein_coding	secretory carrier membrane protein 5
known_NIR_20186	chr9	57359317	57375099	-	57359317	57375216	A5SS	ENSMUST00000046587.8	known	0.50	9	9	9	9	y	0.27	3	8	3	8	y	0.45	10	12	10	12	y	0.09	2	20	2	20	y	0.33	9	18	9	18	y	0.18	3	14	3	14	y	0.35	6	11	6	11	y	0.17	3	15	3	15	y	0.12	2	15	2	15	y	0.18	3	14	3	14	y	0.50	9	9	9	9	y	0.38	5	8	5	8	y	ENSMUSG00000040722.8	Scamp5	chr9	protein_coding	secretory carrier membrane protein 5
known_NIR_20187	chr9	57446171;57446577	57446529;57447938	+	57446171	57447938	cassetteExon	ENSMUST00000093833.6	known	0.74	8.5	3	9;8	3	y	0.33	2.5	5	2;3	5	y	0.53	4.5	4	4;5	4	y	0.64	7.0	4	7;7	4	y	0.49	12.5	13	13;12	13	y	0.50	4.0	4	5;3	4	y	0.89	8.5	1	6;11	1	n	0.79	7.5	2	8;7	2	y	0.56	5.0	4	5;5	4	y	0.44	8.0	10	8;8	10	y	0.52	8.5	8	9;8	8	y	0.65	13.0	7	15;11	7	y	ENSMUSG00000032305.16	Fam219b	chr9	protein_coding	family with sequence similarity 219, member B
known_NIR_20188	chr9	57497747	57498021	+	57497747	57497944	A3SS	ENSMUST00000053230.7	known	0.00	0	8	0	8	n	0.08	1	12	1	12	n	0.07	2	28	2	28	y	0.22	4	14	4	14	y	0.00	0	27	0	27	n	0.20	1	4	1	4	n	0.12	2	14	2	14	y	0.04	1	24	1	24	n	0.00	0	13	0	13	n	0.00	0	19	0	19	n	0.11	1	8	1	8	n	0.12	2	14	2	14	y	ENSMUSG00000032308.10	Ulk3	chr9	protein_coding	unc-51-like kinase 3
known_NIR_20189	chr9	57538726	57552278	-	57538726	57541278	5pMXE	ENSMUST00000217314.2	known	0.84	99	19	99	19	y	0.70	71	30	71	30	y	0.86	83	13	83	13	y	0.91	112	11	112	11	y	0.84	137	27	137	27	y	0.83	44	9	44	9	y	0.83	115	23	115	23	y	0.78	73	21	73	21	y	0.73	76	28	76	28	y	0.90	146	16	146	16	y	0.79	81	22	81	22	y	0.80	98	25	98	25	y	ENSMUSG00000032312.8	Csk	chr9	protein_coding	c-src tyrosine kinase
known_NIR_20190	chr9	57538726;57541328	57541278;57552278	-	57538726	57552278	cassetteExon	ENSMUST00000034863.8	known	0.14	16.5	99	19;14	99	y	0.26	24.5	71	30;19	71	y	0.12	11.5	83	13;10	83	y	0.09	11.5	112	11;12	112	y	0.13	21.0	137	27;15	137	y	0.12	6.0	44	9;3	44	y	0.15	20.0	115	23;17	115	y	0.19	17.0	73	21;13	73	y	0.24	23.5	76	28;19	76	y	0.11	17.5	146	16;19	146	y	0.20	20.0	81	22;18	81	y	0.17	20.0	98	25;15	98	y	ENSMUSG00000032312.8	Csk	chr9	protein_coding	c-src tyrosine kinase
known_NIR_20191	chr9	57620844	57634469	+	57620844	57623231	3pMXE	ENSMUST00000142807.2	known	0.33	9	18	9	18	y	0.15	2	11	2	11	y	0.33	10	20	10	20	y	0.15	4	22	4	22	y	0.20	5	20	5	20	y	0.19	3	13	3	13	y	0.42	8	11	8	11	y	0.25	1	3	1	3	n	0.14	2	12	2	12	y	0.23	6	20	6	20	y	0.40	8	12	8	12	y	0.22	7	25	7	25	y	ENSMUSG00000038957.14	Edc3	chr9	protein_coding	enhancer of mRNA decapping 3
known_NIR_20192	chr9	57620844	57634469	+	57620844;57623550	57623231;57634469	ES	ENSMUST00000043990.14	known	0.38	9	15.0	9	18;12	y	0.12	2	14.0	2	11;17	y	0.31	10	22.0	10	20;24	y	0.15	4	23.0	4	22;24	y	0.20	5	20.5	5	20;21	y	0.17	3	15.0	3	13;17	y	0.35	8	15.0	8	11;19	y	0.11	1	8.5	1	3;14	n	0.13	2	13.5	2	12;15	y	0.21	6	23.0	6	20;26	y	0.33	8	16.0	8	12;20	y	0.21	7	27.0	7	25;29	y	ENSMUSG00000038957.14	Edc3	chr9	protein_coding	enhancer of mRNA decapping 3
known_NIR_20193	chr9	57665633	57668107	-	57665633	57665910	A5SS	ENSMUST00000216095.2	known	0.00	0	76	0	76	n	0.15	13	73	13	73	y	0.00	0	62	0	62	n	0.06	5	85	5	85	y	0.06	7	115	7	115	y	0.00	0	41	0	41	n	0.11	13	110	13	110	y	0.06	3	50	3	50	y	0.07	4	57	4	57	y	0.07	7	90	7	90	y	0.01	1	80	1	80	n	0.07	6	82	6	82	y	ENSMUSG00000032316.9	Clk3	chr9	protein_coding	CDC-like kinase 3
known_NIR_20194	chr9	57665633	57668107	-	57665633;57666006	57665910;57668107	ES	ENSMUST00000065330.8	known	0.00	0	58.5	0	76;41	n	0.17	13	62.0	13	73;51	y	0.00	0	58.5	0	62;55	n	0.07	5	67.0	5	85;49	y	0.07	7	97.0	7	115;79	y	0.00	0	42.0	0	41;43	n	0.12	13	91.5	13	110;73	y	0.07	3	42.5	3	50;35	y	0.08	4	44.5	4	57;32	y	0.10	7	66.0	7	90;42	y	0.01	1	66.0	1	80;52	n	0.09	6	62.0	6	82;42	y	ENSMUSG00000032316.9	Clk3	chr9	protein_coding	CDC-like kinase 3
known_NIR_20195	chr9	57669150	57671761	-	57669150	57672357	A5SS	ENSMUST00000216095.2	known	0.00	0	24	0	24	n	0.04	1	23	1	23	n	0.00	0	33	0	33	n	0.00	0	40	0	40	n	0.00	0	42	0	42	n	0.00	0	24	0	24	n	0.00	0	21	0	21	n	0.00	0	14	0	14	n	0.00	0	19	0	19	n	0.05	2	35	2	35	y	0.00	0	25	0	25	n	0.00	0	36	0	36	n	ENSMUSG00000032316.9	Clk3	chr9	protein_coding	CDC-like kinase 3
known_NIR_20196	chr9	57818342	57819921	+	57818290	57819921	A5SS	ENSMUST00000216925.2	known	0.92	47	4	47	4	y	0.82	18	4	18	4	y	0.89	24	3	24	3	y	0.86	43	7	43	7	y	0.93	53	4	53	4	y	0.93	26	2	26	2	y	0.94	50	3	50	3	y	0.89	25	3	25	3	y	0.81	30	7	30	7	y	0.94	59	4	59	4	y	0.86	37	6	37	6	y	0.78	35	10	35	10	y	ENSMUSG00000055720.11	Ubl7	chr9	protein_coding	ubiquitin-like 7 (bone marrow stromal cell-derived)
known_NIR_20197	chr9	57818342	57819921	+	57819108	57819921	A5SS&ES	ENSMUST00000214086.2	known	0.82	47	10	47	10	y	0.75	18	6	18	6	y	0.75	24	8	24	8	y	0.81	43	10	43	10	y	0.88	53	7	53	7	y	0.76	26	8	26	8	y	0.85	50	9	50	9	y	0.83	25	5	25	5	y	0.88	30	4	30	4	y	0.89	59	7	59	7	y	0.79	37	10	37	10	y	0.78	35	10	35	10	y	ENSMUSG00000055720.11	Ubl7	chr9	protein_coding	ubiquitin-like 7 (bone marrow stromal cell-derived)
known_NIR_20198	chr9	57818342;57819108	57819000;57819921	+	57818342	57819921	cassetteExon	ENSMUST00000163329.2	known	0.10	5.5	47	1;10	47	n	0.23	5.5	18	5;6	18	y	0.21	6.5	24	5;8	24	y	0.15	7.5	43	5;10	43	y	0.10	6.0	53	5;7	53	y	0.15	4.5	26	1;8	26	n	0.13	7.5	50	6;9	50	y	0.12	3.5	25	2;5	25	y	0.10	3.5	30	3;4	30	y	0.09	6.0	59	5;7	59	y	0.16	7.0	37	4;10	37	y	0.23	10.5	35	11;10	35	y	ENSMUSG00000055720.11	Ubl7	chr9	protein_coding	ubiquitin-like 7 (bone marrow stromal cell-derived)
known_NIR_20199	chr9	57818454	57819921	+	57818290	57819921	A5SS	ENSMUST00000216925.2	known	0.60	6	4	6	4	y	0.56	5	4	5	4	n	0.40	2	3	2	3	n	0.30	3	7	3	7	y	0.56	5	4	5	4	n	0.67	4	2	4	2	n	0.67	6	3	6	3	n	0.40	2	3	2	3	n	0.36	4	7	4	7	y	0.64	7	4	7	4	y	0.25	2	6	2	6	n	0.09	1	10	1	10	n	ENSMUSG00000055720.11	Ubl7	chr9	protein_coding	ubiquitin-like 7 (bone marrow stromal cell-derived)
known_NIR_20200	chr9	57818454	57819921	+	57818342	57819921	A5SS	ENSMUST00000163329.2	known	0.11	6	47	6	47	y	0.22	5	18	5	18	y	0.08	2	24	2	24	y	0.07	3	43	3	43	y	0.09	5	53	5	53	y	0.13	4	26	4	26	y	0.11	6	50	6	50	y	0.07	2	25	2	25	y	0.12	4	30	4	30	y	0.11	7	59	7	59	y	0.05	2	37	2	37	y	0.03	1	35	1	35	n	ENSMUSG00000055720.11	Ubl7	chr9	protein_coding	ubiquitin-like 7 (bone marrow stromal cell-derived)
known_NIR_20201	chr9	57818454	57819921	+	57819108	57819921	A5SS&ES	ENSMUST00000217132.2	known	0.38	6	10	6	10	y	0.45	5	6	5	6	y	0.20	2	8	2	8	y	0.23	3	10	3	10	y	0.42	5	7	5	7	y	0.33	4	8	4	8	y	0.40	6	9	6	9	y	0.29	2	5	2	5	n	0.50	4	4	4	4	n	0.50	7	7	7	7	y	0.17	2	10	2	10	y	0.09	1	10	1	10	n	ENSMUSG00000055720.11	Ubl7	chr9	protein_coding	ubiquitin-like 7 (bone marrow stromal cell-derived)
known_NIR_20202	chr9	57818454;57819108	57819000;57819921	+	57818454	57819921	cassetteExon	ENSMUST00000216841.2	known	0.45	5.0	6	0;10	6	n	0.38	3.0	5	0;6	5	n	0.67	4.0	2	0;8	2	n	0.62	5.0	3	0;10	3	n	0.41	3.5	5	0;7	5	n	0.50	4.0	4	0;8	4	n	0.43	4.5	6	0;9	6	n	0.67	4.0	2	3;5	2	y	0.33	2.0	4	0;4	4	n	0.33	3.5	7	0;7	7	n	0.71	5.0	2	0;10	2	n	0.83	5.0	1	0;10	1	n	ENSMUSG00000055720.11	Ubl7	chr9	protein_coding	ubiquitin-like 7 (bone marrow stromal cell-derived)
known_NIR_20203	chr9	57818565	57819921	+	57818342	57819921	A5SS	ENSMUST00000163329.2	known	0.00	0	47	0	47	n	0.00	0	18	0	18	n	0.08	2	24	2	24	y	0.00	0	43	0	43	n	0.00	0	53	0	53	n	0.00	0	26	0	26	n	0.00	0	50	0	50	n	0.00	0	25	0	25	n	0.00	0	30	0	30	n	0.00	0	59	0	59	n	0.03	1	37	1	37	n	0.03	1	35	1	35	n	ENSMUSG00000055720.11	Ubl7	chr9	protein_coding	ubiquitin-like 7 (bone marrow stromal cell-derived)
known_NIR_20204	chr9	57818565	57819921	+	57819108	57819921	A5SS&ES	ENSMUST00000217132.2	known	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.20	2	8	2	8	y	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.09	1	10	1	10	n	0.09	1	10	1	10	n	ENSMUSG00000055720.11	Ubl7	chr9	protein_coding	ubiquitin-like 7 (bone marrow stromal cell-derived)
known_NIR_20205	chr9	57819108	57819921	+	57818290	57819921	A5SS	ENSMUST00000216925.2	known	0.71	10	4	10	4	y	0.60	6	4	6	4	y	0.73	8	3	8	3	y	0.59	10	7	10	7	y	0.64	7	4	7	4	y	0.80	8	2	8	2	y	0.75	9	3	9	3	y	0.62	5	3	5	3	n	0.36	4	7	4	7	y	0.64	7	4	7	4	y	0.62	10	6	10	6	y	0.50	10	10	10	10	y	ENSMUSG00000055720.11	Ubl7	chr9	protein_coding	ubiquitin-like 7 (bone marrow stromal cell-derived)
known_NIR_20206	chr9	57820214	57821837	+	57820133	57821837	A5SS	ENSMUST00000216925.2	known	0.00	0	122	0	122	n	0.00	0	121	0	121	n	0.02	2	101	2	101	y	0.00	0	156	0	156	n	0.00	0	171	0	171	n	0.00	0	80	0	80	n	0.00	0	152	0	152	n	0.00	0	77	0	77	n	0.00	0	106	0	106	n	0.01	1	142	1	142	n	0.00	0	98	0	98	n	0.00	0	137	0	137	n	ENSMUSG00000055720.11	Ubl7	chr9	protein_coding	ubiquitin-like 7 (bone marrow stromal cell-derived)
known_NIR_20207	chr9	57827406	57827668	+	57827406	57827787	A3SS	ENSMUST00000216925.2	known	0.02	3	125	3	125	y	0.04	5	116	5	116	y	0.05	5	105	5	105	y	0.00	0	156	0	156	n	0.01	1	150	1	150	n	0.00	0	64	0	64	n	0.01	1	131	1	131	n	0.00	0	68	0	68	n	0.01	1	114	1	114	n	0.01	2	168	2	168	y	0.01	2	146	2	146	y	0.00	0	131	0	131	n	ENSMUSG00000055720.11	Ubl7	chr9	protein_coding	ubiquitin-like 7 (bone marrow stromal cell-derived)
known_NIR_20208	chr9	58127847	58128998	-	58127852	58128998	A3SS	ENSMUST00000085673.11	known	0.00	0	17	0	17	n	0.00	0	8	0	8	n	0.06	1	17	1	17	n	0.03	1	28	1	28	n	0.11	2	17	2	17	y	0.00	0	12	0	12	n	0.15	2	11	2	11	y	0.00	0	12	0	12	n	0.06	1	16	1	16	n	0.07	1	13	1	13	n	0.05	1	18	1	18	n	0.00	0	15	0	15	n	ENSMUSG00000036986.17	Pml	chr9	protein_coding	promyelocytic leukemia
known_NIR_20209	chr9	58127852	58136638	-	58127852;58129148	58128998;58136638	ES	ENSMUST00000085673.11	known	0.18	5	22.5	5	17;28	y	0.07	1	12.5	1	8;17	n	0.12	2	15.0	2	17;13	y	0.16	5	27.0	5	28;26	y	0.30	10	23.0	10	17;29	y	0.07	1	14.0	1	12;16	n	0.12	2	14.0	2	11;17	y	0.00	0	16.5	0	12;21	n	0.10	2	18.5	2	16;21	y	0.18	5	23.5	5	13;34	y	0.00	0	25.0	0	18;32	n	0.20	5	19.5	5	15;24	y	ENSMUSG00000036986.17	Pml	chr9	protein_coding	promyelocytic leukemia
known_NIR_20210	chr9	58127852	58136638	-	58129148	58136638	A3SS&ES	ENSMUST00000135310.8	known	0.15	5	28	5	28	y	0.06	1	17	1	17	n	0.13	2	13	2	13	y	0.16	5	26	5	26	y	0.26	10	29	10	29	y	0.06	1	16	1	16	n	0.11	2	17	2	17	y	0.00	0	21	0	21	n	0.09	2	21	2	21	y	0.13	5	34	5	34	y	0.00	0	32	0	32	n	0.17	5	24	5	24	y	ENSMUSG00000036986.17	Pml	chr9	protein_coding	promyelocytic leukemia
known_NIR_20211	chr9	58137369	58140436	-	58137369;58137911	58137774;58140436	ES	ENSMUST00000085673.11	known	0.07	2	27.5	2	28;27	y	0.45	9	11.0	9	9;13	y	0.60	12	8.0	12	9;7	y	0.26	9	26.0	9	32;20	y	0.47	20	22.5	20	24;21	y	0.40	5	7.5	5	3;12	y	0.45	9	11.0	9	11;11	y	0.32	7	15.0	7	9;21	y	0.53	9	8.0	9	10;6	y	0.42	14	19.0	14	20;18	y	0.38	8	13.0	8	13;13	y	0.53	13	11.5	13	9;14	y	ENSMUSG00000036986.17	Pml	chr9	protein_coding	promyelocytic leukemia
known_NIR_20212	chr9	58137369	58140436	-	58137911	58140436	3pMXE	ENSMUST00000138775.2	known	0.07	2	27	2	27	y	0.41	9	13	9	13	y	0.63	12	7	12	7	y	0.31	9	20	9	20	y	0.49	20	21	20	21	y	0.29	5	12	5	12	y	0.45	9	11	9	11	y	0.25	7	21	7	21	y	0.60	9	6	9	6	y	0.44	14	18	14	18	y	0.38	8	13	8	13	y	0.48	13	14	13	14	y	ENSMUSG00000036986.17	Pml	chr9	protein_coding	promyelocytic leukemia
known_NIR_20213	chr9	58154721	58156944	-	58154721	58156824	A5SS	ENSMUST00000085673.11	known	0.08	1	12	1	12	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.02	1	43	1	43	n	0.00	0	32	0	32	n	0.00	0	4	0	4	n	0.00	0	23	0	23	n	0.00	0	7	0	7	n	0.00	0	23	0	23	n	0.08	2	24	2	24	y	0.00	0	14	0	14	n	0.00	0	23	0	23	n	ENSMUSG00000036986.17	Pml	chr9	protein_coding	promyelocytic leukemia
known_NIR_20214	chr9	58162323	58163923	+	58162323	58162817	3pMXE	ENSMUST00000215488.2	known	0.43	3	4	3	4	n	0.67	4	2	4	2	n	0.50	2	2	2	2	n	1.00	1	0	1	0	n	0.71	5	2	5	2	n	1.00	6	0	6	0	n	0.57	8	6	8	6	y	0.67	2	1	2	1	n	1.00	1	0	1	0	n	0.57	4	3	4	3	n	0.29	2	5	2	5	n	0.89	8	1	8	1	n	ENSMUSG00000032333.7	Stoml1	chr9	protein_coding	stomatin-like 1
known_NIR_20215	chr9	58162323;58163096	58162817;58163923	+	58162323	58163923	cassetteExon	ENSMUST00000034883.7	known	0.45	2.5	3	4;1	3	n	0.43	3.0	4	2;4	4	y	0.69	4.5	2	2;7	2	y	0.78	3.5	1	0;7	1	n	0.58	7.0	5	2;12	5	y	0.29	2.5	6	0;5	6	n	0.38	5.0	8	6;4	8	y	0.50	2.0	2	1;3	2	n	0.00	0.0	1	0;0	1	n	0.47	3.5	4	3;4	4	y	0.69	4.5	2	5;4	2	y	0.24	2.5	8	1;4	8	n	ENSMUSG00000032333.7	Stoml1	chr9	protein_coding	stomatin-like 1
known_NIR_20216	chr9	58489809	58530970	+	58489809	58547952	A3SS	ENSMUST00000177064.8	known	1.00	94	0	94	0	n	1.00	75	0	75	0	n	0.99	158	1	158	1	n	1.00	145	0	145	0	n	1.00	155	0	155	0	n	1.00	96	0	96	0	n	1.00	158	0	158	0	n	1.00	90	0	90	0	n	1.00	80	0	80	0	n	0.97	123	4	123	4	y	1.00	100	0	100	0	n	1.00	150	0	150	0	n	ENSMUSG00000032336.18	Nptn	chr9	protein_coding	neuroplastin
known_NIR_20217	chr9	58489809	58530970	+	58489809;58526293	58525946;58530970	ES	ENSMUST00000177292.8	known	0.98	94	1.5	94	2;1	n	0.98	75	1.5	75	1;2	n	0.98	158	3.5	158	3;4	y	0.99	145	1.5	145	3;0	n	0.99	155	2.0	155	0;4	n	1.00	96	0.0	96	0;0	n	0.99	158	1.5	158	2;1	n	0.99	90	0.5	90	0;1	n	1.00	80	0.0	80	0;0	n	0.99	123	1.5	123	3;0	n	0.98	100	2.5	100	3;2	y	0.99	150	2.0	150	0;4	n	ENSMUSG00000032336.18	Nptn	chr9	protein_coding	neuroplastin
known_NIR_20218	chr9	58489809	58535117	+	58489809;58531138	58530970;58535117	ES	ENSMUST00000085651.12	known	0.00	0	90.0	0	94;86	n	0.00	0	76.0	0	75;77	n	0.00	0	161.5	0	158;165	n	0.00	0	129.5	0	145;114	n	0.00	0	143.0	0	155;131	n	0.01	1	87.0	1	96;78	n	0.01	2	155.0	2	158;152	y	0.00	0	94.5	0	90;99	n	0.00	0	80.0	0	80;80	n	0.00	0	135.0	0	123;147	n	0.00	0	96.0	0	100;92	n	0.00	0	148.0	0	150;146	n	ENSMUSG00000032336.18	Nptn	chr9	protein_coding	neuroplastin
known_NIR_20219	chr9	58535211	58550812	+	58535211	58547952	3pMXE	ENSMUST00000177380.8	known	0.01	1	111	1	111	n	0.01	1	94	1	94	n	0.00	0	187	0	187	n	0.00	0	124	0	124	n	0.01	1	139	1	139	n	0.00	0	82	0	82	n	0.00	0	139	0	139	n	0.02	2	89	2	89	y	0.00	0	86	0	86	n	0.00	0	167	0	167	n	0.00	0	131	0	131	n	0.00	0	151	0	151	n	ENSMUSG00000032336.18	Nptn	chr9	protein_coding	neuroplastin
known_NIR_20220	chr9	58535211	58550812	+	58535211;58548085	58547952;58550812	ES	ENSMUST00000177292.8	known	0.01	1	110.0	1	111;109	n	0.01	1	106.0	1	94;118	n	0.00	0	203.5	0	187;220	n	0.00	0	131.0	0	124;138	n	0.01	1	171.5	1	139;204	n	0.00	0	91.5	0	82;101	n	0.00	0	154.0	0	139;169	n	0.02	2	88.0	2	89;87	y	0.00	0	87.5	0	86;89	n	0.00	0	177.0	0	167;187	n	0.00	0	138.0	0	131;145	n	0.00	0	160.0	0	151;169	n	ENSMUSG00000032336.18	Nptn	chr9	protein_coding	neuroplastin
known_NIR_20221	chr9	58550967	58557780	+	58551085	58557780	A5SS	ENSMUST00000177292.8	known	0.05	4	73	4	73	y	0.03	2	77	2	77	y	0.06	8	130	8	130	y	0.04	4	98	4	98	y	0.07	8	104	8	104	y	0.00	0	62	0	62	n	0.03	4	139	4	139	y	0.00	0	76	0	76	n	0.05	3	56	3	56	y	0.04	4	95	4	95	y	0.04	4	101	4	101	y	0.03	3	104	3	104	y	ENSMUSG00000032336.18	Nptn	chr9	protein_coding	neuroplastin
known_NIR_20222	chr9	58806516	58810197	-	58806516;58809398	58809366;58810197	ES	ENSMUST00000068664.7	known	1.00	7	0.0	7	0;0	n	1.00	23	0.0	23	0;0	n	0.81	11	2.5	11	2;3	y	1.00	22	0.0	22	0;0	n	0.98	29	0.5	29	1;0	n	1.00	8	0.0	8	0;0	n	0.98	25	0.5	25	0;1	n	1.00	12	0.0	12	0;0	n	0.80	4	1.0	4	1;1	n	1.00	26	0.0	26	0;0	n	1.00	15	0.0	15	0;0	n	1.00	24	0.0	24	0;0	n	ENSMUSG00000032340.9	Neo1	chr9	protein_coding	neogenin
known_NIR_20223	chr9	58814329	58815687	-	58814377	58815687	A3SS	ENSMUST00000068664.7	known	0.82	9	2	9	2	y	0.91	10	1	10	1	n	0.92	12	1	12	1	n	0.92	12	1	12	1	n	0.93	25	2	25	2	y	0.86	6	1	6	1	n	1.00	16	0	16	0	n	0.54	7	6	7	6	y	0.86	6	1	6	1	n	0.88	14	2	14	2	y	1.00	8	0	8	0	n	0.86	12	2	12	2	y	ENSMUSG00000032340.9	Neo1	chr9	protein_coding	neogenin
known_NIR_20224	chr9	58838398	58863242	-	58838458	58863242	A3SS	ENSMUST00000068664.7	known	0.43	3	4	3	4	n	0.50	2	2	2	2	n	0.61	11	7	11	7	y	0.43	6	8	6	8	y	0.48	11	12	11	12	y	0.56	5	4	5	4	n	0.30	3	7	3	7	y	0.57	4	3	4	3	n	0.00	0	6	0	6	n	0.39	7	11	7	11	y	0.33	3	6	3	6	n	0.17	3	15	3	15	y	ENSMUSG00000032340.9	Neo1	chr9	protein_coding	neogenin
known_NIR_20225	chr9	59221134	59222017	+	59221134	59222014	A3SS	ENSMUST00000217570.2	known	0.41	17	24	17	24	y	0.57	23	17	23	17	y	0.58	37	27	37	27	y	0.51	27	26	27	26	y	0.41	36	51	36	51	y	0.54	19	16	19	16	y	0.36	21	37	21	37	y	0.45	10	12	10	12	y	0.56	24	19	24	19	y	0.58	34	25	34	25	y	0.47	17	19	17	19	y	0.53	19	17	19	17	y	ENSMUSG00000025236.12	Adpgk	chr9	protein_coding	ADP-dependent glucokinase
known_NIR_20226	chr9	59221134	59225217	+	59221134	59222014	3pMXE	ENSMUST00000217570.2	known	0.00	0	24	0	24	n	0.00	0	17	0	17	n	0.00	0	27	0	27	n	0.00	0	26	0	26	n	0.04	2	51	2	51	y	0.00	0	16	0	16	n	0.00	0	37	0	37	n	0.00	0	12	0	12	n	0.00	0	19	0	19	n	0.00	0	25	0	25	n	0.00	0	19	0	19	n	0.00	0	17	0	17	n	ENSMUSG00000025236.12	Adpgk	chr9	protein_coding	ADP-dependent glucokinase
known_NIR_20227	chr9	59221134	59225217	+	59221134	59222017	3pMXE	ENSMUST00000026266.9	known	0.00	0	17	0	17	n	0.00	0	23	0	23	n	0.00	0	37	0	37	n	0.00	0	27	0	27	n	0.05	2	36	2	36	y	0.00	0	19	0	19	n	0.00	0	21	0	21	n	0.00	0	10	0	10	n	0.00	0	24	0	24	n	0.00	0	34	0	34	n	0.00	0	17	0	17	n	0.00	0	19	0	19	n	ENSMUSG00000025236.12	Adpgk	chr9	protein_coding	ADP-dependent glucokinase
known_NIR_20228	chr9	59303894	59313008	-	59303894;59310708	59310651;59313008	ES	ENSMUST00000171975.8	known	0.00	0	48.0	0	46;50	n	0.12	3	22.0	3	25;19	y	0.00	0	70.5	0	64;77	n	0.00	0	75.0	0	86;64	n	0.02	2	97.5	2	91;104	y	0.00	0	44.5	0	51;38	n	0.00	0	91.0	0	84;98	n	0.00	0	40.5	0	33;48	n	0.00	0	51.0	0	51;51	n	0.01	1	89.5	1	87;92	n	0.00	0	58.0	0	66;50	n	0.00	0	75.0	0	82;68	n	ENSMUSG00000025234.12	Arih1	chr9	protein_coding	ariadne RBR E3 ubiquitin protein ligase 1
known_NIR_20229	chr9	59524691	59529632	+	59524691;59525990	59525751;59529632	ES	ENSMUST00000026267.16	known	0.10	1	9.5	1	1;18	n	0.11	1	8.5	1	3;14	n	0.00	0	9.5	0	5;14	n	0.25	2	6.0	2	2;10	y	0.00	0	10.0	0	3;17	n	0.43	3	4.0	3	3;5	y	0.07	1	14.0	1	3;25	n	0.00	0	8.0	0	1;15	n	0.00	0	7.0	0	1;13	n	0.00	0	13.0	0	3;23	n	0.11	2	16.0	2	1;31	n	0.05	1	19.0	1	3;35	n	ENSMUSG00000025237.17	Parp6	chr9	protein_coding	poly (ADP-ribose) polymerase family, member 6
known_NIR_20230	chr9	59524691	59529632	+	59525990	59529632	5pMXE	ENSMUST00000167091.3	known	0.05	1	18	1	18	n	0.07	1	14	1	14	n	0.00	0	14	0	14	n	0.17	2	10	2	10	y	0.00	0	17	0	17	n	0.38	3	5	3	5	n	0.04	1	25	1	25	n	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.00	0	23	0	23	n	0.06	2	31	2	31	y	0.03	1	35	1	35	n	ENSMUSG00000025237.17	Parp6	chr9	protein_coding	poly (ADP-ribose) polymerase family, member 6
known_NIR_20231	chr9	59538052	59538623	+	59538112	59538623	A5SS	ENSMUST00000026267.16	known	0.11	2	17	2	17	y	0.20	4	16	4	16	y	0.12	2	14	2	14	y	0.30	6	14	6	14	y	0.09	3	29	3	29	y	0.40	2	3	2	3	n	0.14	4	25	4	25	y	0.40	2	3	2	3	n	0.24	5	16	5	16	y	0.36	10	18	10	18	y	0.33	7	14	7	14	y	0.28	10	26	10	26	y	ENSMUSG00000025237.17	Parp6	chr9	protein_coding	poly (ADP-ribose) polymerase family, member 6
known_NIR_20232	chr9	59547432	59556113	+	59547432;59548379	59548307;59556113	ES	ENSMUST00000216351.2	known	0.09	2	19.5	2	21;18	y	0.23	4	13.5	4	14;13	y	0.49	9	9.5	9	8;11	y	0.29	8	19.5	8	24;15	y	0.18	5	23.5	5	27;20	y	0.35	4	7.5	4	6;9	y	0.25	9	27.5	9	33;22	y	0.00	0	5.5	0	6;5	n	0.36	7	12.5	7	15;10	y	0.19	7	29.5	7	37;22	y	0.26	6	17.5	6	23;12	y	0.24	5	16.0	5	24;8	y	ENSMUSG00000025237.17	Parp6	chr9	protein_coding	poly (ADP-ribose) polymerase family, member 6
known_NIR_20233	chr9	59547432	59556113	+	59547432;59549093	59548307;59556113	ES	ENSMUST00000216482.2	known	0.16	2	10.5	2	21;0	n	0.29	4	10.0	4	14;6	y	0.67	9	4.5	9	8;1	n	0.40	8	12.0	8	24;0	n	0.23	5	16.5	5	27;6	y	0.47	4	4.5	4	6;3	y	0.33	9	18.0	9	33;3	y	0.00	0	3.0	0	6;0	n	0.44	7	9.0	7	15;3	y	0.26	7	20.0	7	37;3	y	0.28	6	15.5	6	23;8	y	0.25	5	15.0	5	24;6	y	ENSMUSG00000025237.17	Parp6	chr9	protein_coding	poly (ADP-ribose) polymerase family, member 6
known_NIR_20234	chr9	59548379	59556113	+	59548379;59549093	59549024;59556113	ES	ENSMUST00000026267.16	known	1.00	18	0.0	18	0;0	n	0.76	13	4.0	13	2;6	y	0.88	11	1.5	11	2;1	n	0.97	15	0.5	15	1;0	n	0.82	20	4.5	20	3;6	y	0.75	9	3.0	9	3;3	y	0.92	22	2.0	22	1;3	n	1.00	5	0.0	5	0;0	n	0.71	10	4.0	10	5;3	y	0.85	22	4.0	22	5;3	y	0.71	12	5.0	12	2;8	y	0.67	8	4.0	8	2;6	y	ENSMUSG00000025237.17	Parp6	chr9	protein_coding	poly (ADP-ribose) polymerase family, member 6
known_NIR_20235	chr9	59548379	59556113	+	59549093	59556113	A5SS	ENSMUST00000216482.2	known	1.00	18	0	18	0	n	0.68	13	6	13	6	y	0.92	11	1	11	1	n	1.00	15	0	15	0	n	0.77	20	6	20	6	y	0.75	9	3	9	3	y	0.88	22	3	22	3	y	1.00	5	0	5	0	n	0.77	10	3	10	3	y	0.88	22	3	22	3	y	0.60	12	8	12	8	y	0.57	8	6	8	6	y	ENSMUSG00000025237.17	Parp6	chr9	protein_coding	poly (ADP-ribose) polymerase family, member 6
known_NIR_20236	chr9	59549093	59556113	+	59547432	59556113	A5SS	ENSMUST00000167091.3	known	0.00	0	2	0	2	n	0.60	6	4	6	4	y	0.10	1	9	1	9	n	0.00	0	8	0	8	n	0.55	6	5	6	5	y	0.43	3	4	3	4	n	0.25	3	9	3	9	y	-	-	-	-	-	-	0.30	3	7	3	7	y	0.30	3	7	3	7	y	0.57	8	6	8	6	y	0.55	6	5	6	5	y	ENSMUSG00000025237.17	Parp6	chr9	protein_coding	poly (ADP-ribose) polymerase family, member 6
known_NIR_20237	chr9	59579356	59582851	+	59579356	59582312	3pMXE	ENSMUST00000213220.2	known	1.00	29	0	29	0	n	0.92	24	2	24	2	y	0.74	55	19	55	19	y	0.90	9	1	9	1	n	0.92	44	4	44	4	y	1.00	19	0	19	0	n	0.29	42	105	42	105	y	1.00	14	0	14	0	n	0.91	10	1	10	1	n	1.00	15	0	15	0	n	0.76	25	8	25	8	y	0.76	13	4	13	4	y	ENSMUSG00000032294.18	Pkm	chr9	protein_coding	pyruvate kinase, muscle
known_NIR_20238	chr9	59579356;59582478	59582312;59585327	+	59579356;59583017	59582851;59585327	MXE	ENSMUST00000034834.16	known	0.05	1.5	28.5	0;3	29;28	n	0.14	3.5	21.5	2;5	24;19	y	0.17	11.5	55.0	19;4	55;55	y	0.09	1.0	10.0	1;1	9;11	n	0.11	5.0	40.5	4;6	44;37	y	0.05	1.0	19.0	0;2	19;19	n	0.71	116.5	46.5	105;128	42;51	y	0.00	0.0	11.5	0;0	14;9	n	0.19	3.0	12.5	1;5	10;15	n	0.08	1.5	17.0	0;3	15;19	n	0.23	6.5	21.5	8;5	25;18	y	0.16	2.5	13.0	4;1	13;13	n	ENSMUSG00000032294.18	Pkm	chr9	protein_coding	pyruvate kinase, muscle
known_NIR_20239	chr9	59817990	59829006	+	59817990	59819820	3pMXE	ENSMUST00000127933.2	known	1.00	6	0	6	0	n	1.00	2	0	2	0	n	1.00	6	0	6	0	n	1.00	2	0	2	0	n	1.00	3	0	3	0	n	1.00	3	0	3	0	n	1.00	3	0	3	0	n	0.60	6	4	6	4	y	-	-	-	-	-	-	1.00	2	0	2	0	n	-	-	-	-	-	-	1.00	4	0	4	0	n	ENSMUSG00000039585.16	Myo9a	chr9	protein_coding	myosin IXa
known_NIR_20240	chr9	60761785	60763480	+	60761779	60763480	A5SS	ENSMUST00000214354.2	known	0.50	5	5	5	5	y	1.00	4	0	4	0	n	0.71	5	2	5	2	n	0.58	7	5	7	5	y	0.00	0	7	0	7	n	0.38	3	5	3	5	n	0.56	14	11	14	11	y	1.00	11	0	11	0	n	0.42	5	7	5	7	y	0.59	10	7	10	7	y	0.40	2	3	2	3	n	0.56	5	4	5	4	n	ENSMUSG00000034485.11	Uaca	chr9	protein_coding	uveal autoantigen with coiled-coil domains and ankyrin repeats
known_NIR_20241	chr9	61301964	61309135	+	61301994	61309135	A5SS	ENSMUST00000178113.8	known	0.67	2	1	2	1	n	0.69	11	5	11	5	y	0.68	21	10	21	10	y	1.00	19	0	19	0	n	0.84	21	4	21	4	y	0.62	8	5	8	5	y	0.58	7	5	7	5	y	0.77	10	3	10	3	y	0.79	11	3	11	3	y	0.86	18	3	18	3	y	0.79	11	3	11	3	y	0.67	8	4	8	4	y	ENSMUSG00000032280.17	Tle3	chr9	protein_coding	transducin-like enhancer of split 3
known_NIR_20242	chr9	61301964	61309138	+	61301964	61309135	A3SS	ENSMUST00000159386.8	known	0.60	3	2	3	2	n	0.21	3	11	3	11	y	0.12	3	21	3	21	y	0.21	5	19	5	19	y	0.28	8	21	8	21	y	0.00	0	8	0	8	n	0.22	2	7	2	7	n	0.17	2	10	2	10	y	0.21	3	11	3	11	y	0.28	7	18	7	18	y	0.08	1	11	1	11	n	0.43	6	8	6	8	y	ENSMUSG00000032280.17	Tle3	chr9	protein_coding	transducin-like enhancer of split 3
known_NIR_20243	chr9	61309339	61314636	+	61309339;61310750	61310734;61314636	ES	ENSMUST00000159386.8	known	0.00	0	13.5	0	14;13	n	0.00	0	15.5	0	13;18	n	0.05	2	34.5	2	38;31	y	0.00	0	14.5	0	17;12	n	0.00	0	44.0	0	46;42	n	0.00	0	14.0	0	10;18	n	0.00	0	44.5	0	47;42	n	0.00	0	19.0	0	19;19	n	0.00	0	21.0	0	19;23	n	0.00	0	53.5	0	57;50	n	0.00	0	14.5	0	13;16	n	0.00	0	22.5	0	22;23	n	ENSMUSG00000032280.17	Tle3	chr9	protein_coding	transducin-like enhancer of split 3
known_NIR_20244	chr9	61316689	61317218	+	61316698	61317218	A5SS	ENSMUST00000178113.8	known	0.78	18	5	18	5	y	0.80	4	1	4	1	n	0.87	53	8	53	8	y	0.57	20	15	20	15	y	0.84	42	8	42	8	y	0.80	20	5	20	5	y	0.60	24	16	24	16	y	0.70	21	9	21	9	y	0.76	28	9	28	9	y	0.78	43	12	43	12	y	0.77	27	8	27	8	y	0.90	18	2	18	2	y	ENSMUSG00000032280.17	Tle3	chr9	protein_coding	transducin-like enhancer of split 3
known_NIR_20245	chr9	61317402	61318545	+	61317417	61318545	A5SS	ENSMUST00000178113.8	known	0.43	6	8	6	8	y	0.13	2	13	2	13	y	0.43	18	24	18	24	y	0.19	6	25	6	25	y	0.38	15	25	15	25	y	0.27	4	11	4	11	y	0.25	8	24	8	24	y	0.08	1	12	1	12	n	0.33	7	14	7	14	y	0.31	16	35	16	35	y	0.21	4	15	4	15	y	0.19	3	13	3	13	y	ENSMUSG00000032280.17	Tle3	chr9	protein_coding	transducin-like enhancer of split 3
known_NIR_20246	chr9	61989307	61995711	-	61977895	61995711	A3SS	ENSMUST00000185675.7	known	0.00	0	11	0	11	n	0.12	2	15	2	15	y	0.10	3	27	3	27	y	0.09	3	29	3	29	y	0.05	1	21	1	21	n	0.00	0	13	0	13	n	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	21	0	21	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	ENSMUSG00000032252.15	Glce	chr9	protein_coding	glucuronyl C5-epimerase
known_NIR_20247	chr9	62248836	62279002	+	62248633	62279002	A5SS	ENSMUST00000138226.8	known	1.00	185	0	185	0	n	1.00	199	0	199	0	n	1.00	140	0	140	0	n	1.00	208	0	208	0	n	1.00	237	0	237	0	n	1.00	103	0	103	0	n	1.00	220	0	220	0	n	1.00	116	0	116	0	n	1.00	177	0	177	0	n	0.98	227	4	227	4	y	0.99	211	2	211	2	y	1.00	247	1	247	1	n	ENSMUSG00000032249.15	Anp32a	chr9	protein_coding	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
known_NIR_20248	chr9	62249292	62279002	+	62248836	62279002	A5SS	ENSMUST00000085519.13	known	0.01	1	185	1	185	n	0.00	0	199	0	199	n	0.00	0	140	0	140	n	0.01	3	208	3	208	y	0.00	1	237	1	237	n	0.00	0	103	0	103	n	0.00	0	220	0	220	n	0.02	2	116	2	116	y	0.00	0	177	0	177	n	0.00	0	227	0	227	n	0.00	1	211	1	211	n	0.01	2	247	2	247	y	ENSMUSG00000032249.15	Anp32a	chr9	protein_coding	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
known_NIR_20249	chr9	62249533	62279002	+	62248633	62279002	A5SS	ENSMUST00000138226.8	known	1.00	16	0	16	0	n	1.00	14	0	14	0	n	1.00	9	0	9	0	n	1.00	18	0	18	0	n	1.00	26	0	26	0	n	1.00	5	0	5	0	n	1.00	9	0	9	0	n	1.00	3	0	3	0	n	1.00	12	0	12	0	n	0.79	15	4	15	4	y	0.82	9	2	9	2	y	0.95	18	1	18	1	n	ENSMUSG00000032249.15	Anp32a	chr9	protein_coding	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
known_NIR_20250	chr9	62249533	62279002	+	62248836	62279002	A5SS	ENSMUST00000085519.13	known	0.08	16	185	16	185	y	0.07	14	199	14	199	y	0.06	9	140	9	140	y	0.08	18	208	18	208	y	0.10	26	237	26	237	y	0.05	5	103	5	103	y	0.04	9	220	9	220	y	0.03	3	116	3	116	y	0.06	12	177	12	177	y	0.06	15	227	15	227	y	0.04	9	211	9	211	y	0.07	18	247	18	247	y	ENSMUSG00000032249.15	Anp32a	chr9	protein_coding	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
known_NIR_20251	chr9	62249533	62279002	+	62249292	62279002	A5SS	ENSMUST00000128636.8	known	0.94	16	1	16	1	n	1.00	14	0	14	0	n	1.00	9	0	9	0	n	0.86	18	3	18	3	y	0.96	26	1	26	1	n	1.00	5	0	5	0	n	1.00	9	0	9	0	n	0.60	3	2	3	2	n	1.00	12	0	12	0	n	1.00	15	0	15	0	n	0.90	9	1	9	1	n	0.90	18	2	18	2	y	ENSMUSG00000032249.15	Anp32a	chr9	protein_coding	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
known_NIR_20252	chr9	62249785	62279002	+	62248633	62279002	A5SS	ENSMUST00000138226.8	known	1.00	9	0	9	0	n	1.00	4	0	4	0	n	1.00	10	0	10	0	n	1.00	8	0	8	0	n	1.00	7	0	7	0	n	1.00	1	0	1	0	n	1.00	9	0	9	0	n	1.00	4	0	4	0	n	1.00	4	0	4	0	n	0.69	9	4	9	4	y	0.75	6	2	6	2	n	0.86	6	1	6	1	n	ENSMUSG00000032249.15	Anp32a	chr9	protein_coding	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
known_NIR_20253	chr9	62249785	62279002	+	62248836	62279002	A5SS	ENSMUST00000085519.13	known	0.05	9	185	9	185	y	0.02	4	199	4	199	y	0.07	10	140	10	140	y	0.04	8	208	8	208	y	0.03	7	237	7	237	y	0.01	1	103	1	103	n	0.04	9	220	9	220	y	0.03	4	116	4	116	y	0.02	4	177	4	177	y	0.04	9	227	9	227	y	0.03	6	211	6	211	y	0.02	6	247	6	247	y	ENSMUSG00000032249.15	Anp32a	chr9	protein_coding	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
known_NIR_20254	chr9	62249785	62279002	+	62249292	62279002	A5SS	ENSMUST00000128636.8	known	0.90	9	1	9	1	n	1.00	4	0	4	0	n	1.00	10	0	10	0	n	0.73	8	3	8	3	y	0.88	7	1	7	1	n	1.00	1	0	1	0	n	1.00	9	0	9	0	n	0.67	4	2	4	2	n	1.00	4	0	4	0	n	1.00	9	0	9	0	n	0.86	6	1	6	1	n	0.75	6	2	6	2	n	ENSMUSG00000032249.15	Anp32a	chr9	protein_coding	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
known_NIR_20255	chr9	62249785	62279002	+	62249533	62279002	A5SS	ENSMUST00000135395.8	known	0.36	9	16	9	16	y	0.22	4	14	4	14	y	0.53	10	9	10	9	y	0.31	8	18	8	18	y	0.21	7	26	7	26	y	0.17	1	5	1	5	n	0.50	9	9	9	9	y	0.57	4	3	4	3	n	0.25	4	12	4	12	y	0.38	9	15	9	15	y	0.40	6	9	6	9	y	0.25	6	18	6	18	y	ENSMUSG00000032249.15	Anp32a	chr9	protein_coding	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
known_NIR_20256	chr9	62252169	62279002	+	62248633	62279002	A5SS	ENSMUST00000138226.8	known	1.00	4	0	4	0	n	1.00	2	0	2	0	n	-	-	-	-	-	-	1.00	4	0	4	0	n	1.00	12	0	12	0	n	1.00	2	0	2	0	n	1.00	7	0	7	0	n	-	-	-	-	-	-	1.00	14	0	14	0	n	0.73	11	4	11	4	y	0.86	12	2	12	2	y	0.80	4	1	4	1	n	ENSMUSG00000032249.15	Anp32a	chr9	protein_coding	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
known_NIR_20257	chr9	62252169	62279002	+	62248836	62279002	A5SS	ENSMUST00000085519.13	known	0.02	4	185	4	185	y	0.01	2	199	2	199	y	0.00	0	140	0	140	n	0.02	4	208	4	208	y	0.05	12	237	12	237	y	0.02	2	103	2	103	y	0.03	7	220	7	220	y	0.00	0	116	0	116	n	0.07	14	177	14	177	y	0.05	11	227	11	227	y	0.05	12	211	12	211	y	0.02	4	247	4	247	y	ENSMUSG00000032249.15	Anp32a	chr9	protein_coding	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
known_NIR_20258	chr9	62252169	62279002	+	62249533	62279002	A5SS	ENSMUST00000135395.8	known	0.20	4	16	4	16	y	0.12	2	14	2	14	y	0.00	0	9	0	9	n	0.18	4	18	4	18	y	0.32	12	26	12	26	y	0.29	2	5	2	5	n	0.44	7	9	7	9	y	0.00	0	3	0	3	n	0.54	14	12	14	12	y	0.42	11	15	11	15	y	0.57	12	9	12	9	y	0.18	4	18	4	18	y	ENSMUSG00000032249.15	Anp32a	chr9	protein_coding	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
known_NIR_20259	chr9	62252169	62279002	+	62249785	62279002	A5SS	ENSMUST00000156461.2	known	0.31	4	9	4	9	y	0.33	2	4	2	4	n	0.00	0	10	0	10	n	0.33	4	8	4	8	y	0.63	12	7	12	7	y	0.67	2	1	2	1	n	0.44	7	9	7	9	y	0.00	0	4	0	4	n	0.78	14	4	14	4	y	0.55	11	9	11	9	y	0.67	12	6	12	6	y	0.40	4	6	4	6	y	ENSMUSG00000032249.15	Anp32a	chr9	protein_coding	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
known_NIR_20260	chr9	62778736	62782741	+	62778736	62782759	A3SS	ENSMUST00000213643.2	known	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.17	2	10	2	10	y	0.11	1	8	1	8	n	0.20	1	4	1	4	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000032246.15	Calml4	chr9	protein_coding	calmodulin-like 4
known_NIR_20261	chr9	62788545	62792054	-	62789543	62792054	A3SS	ENSMUST00000098651.6	known	0.08	2	24	2	24	y	0.03	1	35	1	35	n	0.04	1	24	1	24	n	0.19	6	26	6	26	y	0.10	4	36	4	36	y	0.00	0	16	0	16	n	0.15	5	29	5	29	y	0.38	6	10	6	10	y	0.06	1	16	1	16	n	0.03	1	35	1	35	n	0.09	2	20	2	20	y	0.03	1	35	1	35	n	ENSMUSG00000032405.11	Pias1	chr9	protein_coding	protein inhibitor of activated STAT 1
known_NIR_20262	chr9	63247715	63250669	-	63246403	63250669	A3SS	ENSMUST00000034920.11	known	0.02	1	49	1	49	n	0.03	1	38	1	38	n	0.09	4	41	4	41	y	0.04	2	47	2	47	y	0.08	5	54	5	54	y	0.00	0	19	0	19	n	0.02	1	40	1	40	n	0.04	1	25	1	25	n	0.03	1	39	1	39	n	0.07	5	68	5	68	y	0.00	0	32	0	32	n	0.03	2	61	2	61	y	ENSMUSG00000058444.9	Map2k5	chr9	protein_coding	mitogen-activated protein kinase kinase 5
known_NIR_20263	chr9	63301957	63305826	-	63301957	63306158	A5SS	ENSMUST00000168665.3	known	0.00	0	65	0	65	n	0.00	0	84	0	84	n	0.00	0	48	0	48	n	0.00	0	77	0	77	n	0.01	1	93	1	93	n	0.00	0	61	0	61	n	0.00	0	104	0	104	n	0.00	0	39	0	39	n	0.01	1	77	1	77	n	0.01	2	137	2	137	y	0.00	0	110	0	110	n	0.01	1	110	1	110	n	ENSMUSG00000032403.9	2300009A05Rik	chr9	protein_coding	RIKEN cDNA 2300009A05 gene
known_NIR_20264	chr9	63301957	63306158	-	63301957	63305794	5pMXE	ENSMUST00000186165.2	known	1.00	65	0	65	0	n	0.99	84	1	84	1	n	0.96	48	2	48	2	y	0.99	77	1	77	1	n	0.98	93	2	93	2	y	0.97	61	2	61	2	y	1.00	104	0	104	0	n	1.00	39	0	39	0	n	0.99	77	1	77	1	n	1.00	137	0	137	0	n	1.00	110	0	110	0	n	1.00	110	0	110	0	n	ENSMUSG00000032403.9	2300009A05Rik	chr9	protein_coding	RIKEN cDNA 2300009A05 gene
known_NIR_20265	chr9	63526513	63543666	+	63526513;63542669	63542587;63543666	ES	ENSMUST00000041551.9	known	0.06	2	33.0	2	39;27	y	0.04	1	26.0	1	32;20	n	0.00	0	24.5	0	34;15	n	0.00	0	36.0	0	46;26	n	0.00	0	39.0	0	45;33	n	0.00	0	17.5	0	19;16	n	0.00	0	45.0	0	44;46	n	0.00	0	16.0	0	17;15	n	0.02	1	41.5	1	47;36	n	0.02	1	58.5	1	76;41	n	0.00	0	32.0	0	38;26	n	0.00	0	49.5	0	49;50	n	ENSMUSG00000037257.9	Aagab	chr9	protein_coding	alpha- and gamma-adaptin binding protein
known_NIR_20266	chr9	64188929	64195396	+	64188929	64195390	A3SS	ENSMUST00000215031.2	known	1.00	3	0	3	0	n	0.00	0	1	0	1	n	0.62	5	3	5	3	n	0.40	4	6	4	6	y	0.40	2	3	2	3	n	0.67	2	1	2	1	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.33	1	2	1	2	n	0.30	3	7	3	7	y	0.57	4	3	4	3	n	0.40	2	3	2	3	n	ENSMUSG00000032397.8	Tipin	chr9	protein_coding	timeless interacting protein
known_NIR_20267	chr9	64246914	64247830	-	64246914	64248275	A5SS	ENSMUST00000168844.9	known	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.18	3	14	3	14	y	0.00	0	21	0	21	n	0.00	0	19	0	19	n	0.00	0	12	0	12	n	0.12	2	14	2	14	y	0.00	0	7	0	7	n	0.00	0	17	0	17	n	0.00	0	22	0	22	n	0.00	0	15	0	15	n	0.00	0	15	0	15	n	ENSMUSG00000032396.18	Dis3l	chr9	protein_coding	DIS3 like exosome 3'-5' exoribonuclease
known_NIR_20268	chr9	64632864	64644866	-	64632864	64633906	5pMXE	ENSMUST00000168366.2	known	0.03	8	231	8	231	y	0.02	6	319	6	319	y	0.02	6	375	6	375	y	0.02	5	265	5	265	y	0.05	20	384	20	384	y	0.04	8	184	8	184	y	0.03	11	391	11	391	y	0.01	2	174	2	174	y	0.05	14	247	14	247	y	0.02	7	390	7	390	y	0.01	3	289	3	289	y	0.01	5	355	5	355	y	ENSMUSG00000004771.13	Rab11a	chr9	protein_coding	RAB11A, member RAS oncogene family
known_NIR_20269	chr9	64632864;64634099	64633906;64644866	-	64632864	64644866	cassetteExon	ENSMUST00000167569.8	known	0.94	118.0	8	231;5	8	y	0.96	163.0	6	319;7	6	y	0.97	188.0	6	375;1	6	n	0.96	133.5	5	265;2	5	y	0.91	194.0	20	384;4	20	y	0.92	93.0	8	184;2	8	y	0.95	197.0	11	391;3	11	y	0.98	87.5	2	174;1	2	n	0.90	124.5	14	247;2	14	y	0.97	196.5	7	390;3	7	y	0.98	146.0	3	289;3	3	y	0.97	181.0	5	355;7	5	y	ENSMUSG00000004771.13	Rab11a	chr9	protein_coding	RAB11A, member RAS oncogene family
known_NIR_20270	chr9	64634099	64644866	-	64634099;64635711	64635516;64644866	ES	ENSMUST00000172298.8	known	0.03	5	189.5	5	204;175	y	0.04	7	167.0	7	189;145	y	0.00	1	260.5	1	276;245	n	0.01	2	202.5	2	221;184	y	0.01	4	288.0	4	297;279	y	0.01	2	141.5	2	143;140	y	0.01	3	245.0	3	259;231	y	0.01	1	135.5	1	136;135	n	0.01	2	150.5	2	159;142	y	0.01	3	244.0	3	240;248	y	0.02	3	165.0	3	187;143	y	0.03	7	266.0	7	295;237	y	ENSMUSG00000004771.13	Rab11a	chr9	protein_coding	RAB11A, member RAS oncogene family
known_NIR_20271	chr9	64635711	64644866	-	64632864	64644866	A3SS	ENSMUST00000167569.8	known	0.96	175	8	175	8	y	0.96	145	6	145	6	y	0.98	245	6	245	6	y	0.97	184	5	184	5	y	0.93	279	20	279	20	y	0.95	140	8	140	8	y	0.95	231	11	231	11	y	0.99	135	2	135	2	y	0.91	142	14	142	14	y	0.97	248	7	248	7	y	0.98	143	3	143	3	y	0.98	237	5	237	5	y	ENSMUSG00000004771.13	Rab11a	chr9	protein_coding	RAB11A, member RAS oncogene family
known_NIR_20272	chr9	64742634	64746095	+	64742634;64743363	64743236;64746095	ES	ENSMUST00000038890.6	known	0.24	3	9.5	3	6;13	y	0.00	0	2.5	0	1;4	n	0.11	2	16.0	2	10;22	y	0.07	1	14.0	1	16;12	n	0.00	0	19.5	0	20;19	n	0.00	0	8.0	0	7;9	n	0.00	0	6.0	0	6;6	n	0.00	0	11.0	0	13;9	n	0.09	1	10.5	1	11;10	n	0.06	1	15.5	1	15;16	n	0.00	0	4.5	0	6;3	n	0.16	2	10.5	2	10;11	y	ENSMUSG00000053641.10	Dennd4a	chr9	protein_coding	DENN/MADD domain containing 4A
known_NIR_20273	chr9	64742634;64742868	64742790;64743236	+	64742634	64743236	cassetteExon	ENSMUST00000038890.6	known	0.08	0.5	6	0;1	6	n	0.00	0.0	1	0;0	1	n	0.23	3.0	10	3;3	10	y	0.00	0.0	16	0;0	16	n	0.00	0.0	20	0;0	20	n	0.12	1.0	7	0;2	7	n	0.08	0.5	6	1;0	6	n	0.00	0.0	13	0;0	13	n	0.00	0.0	11	0;0	11	n	0.00	0.0	15	0;0	15	n	0.14	1.0	6	1;1	6	n	0.00	0.0	10	0;0	10	n	ENSMUSG00000053641.10	Dennd4a	chr9	protein_coding	DENN/MADD domain containing 4A
known_NIR_20274	chr9	64868539	64868976	+	64868220	64868976	A5SS	ENSMUST00000170517.9	known	0.00	0	5	0	5	n	0.33	2	4	2	4	n	0.25	5	15	5	15	y	0.13	2	13	2	13	y	0.22	2	7	2	7	n	0.00	0	7	0	7	n	0.33	3	6	3	6	n	0.25	1	3	1	3	n	0.17	1	5	1	5	n	0.24	4	13	4	13	y	0.22	2	7	2	7	n	0.09	1	10	1	10	n	ENSMUSG00000034263.14	Ints14	chr9	protein_coding	integrator complex subunit 14
known_NIR_20275	chr9	64940208	64942157	+	64939905	64942157	A5SS	ENSMUST00000034960.14	known	0.00	0	20	0	20	n	0.16	3	16	3	16	y	0.06	3	45	3	45	y	0.06	2	34	2	34	y	0.05	2	42	2	42	y	0.04	1	23	1	23	n	0.15	6	34	6	34	y	0.00	0	21	0	21	n	0.00	0	19	0	19	n	0.07	3	37	3	37	y	0.06	1	17	1	17	n	0.12	4	28	4	28	y	ENSMUSG00000032393.16	Dpp8	chr9	protein_coding	dipeptidylpeptidase 8
known_NIR_20276	chr9	64960455	64961701	+	64960455;64961112	64961051;64961701	ES	ENSMUST00000034960.14	known	0.00	0	43.5	0	45;42	n	0.00	0	40.0	0	34;46	n	0.00	0	87.5	0	96;79	n	0.00	0	54.0	0	51;57	n	0.02	2	99.5	2	101;98	y	0.00	0	23.5	0	26;21	n	0.00	0	67.5	0	65;70	n	0.00	0	44.0	0	51;37	n	0.00	0	31.5	0	34;29	n	0.00	0	68.5	0	69;68	n	0.00	0	32.5	0	35;30	n	0.00	0	56.5	0	51;62	n	ENSMUSG00000032393.16	Dpp8	chr9	protein_coding	dipeptidylpeptidase 8
known_NIR_20277	chr9	64982410	64983018	+	64981867	64983018	A5SS	ENSMUST00000034960.14	known	0.00	0	36	0	36	n	0.06	2	30	2	30	y	0.04	3	67	3	67	y	0.03	2	57	2	57	y	0.04	2	50	2	50	y	0.00	0	37	0	37	n	0.07	5	66	5	66	y	0.05	2	39	2	39	y	0.02	1	52	1	52	n	0.08	6	73	6	73	y	0.06	3	45	3	45	y	0.11	7	59	7	59	y	ENSMUSG00000032393.16	Dpp8	chr9	protein_coding	dipeptidylpeptidase 8
known_NIR_20278	chr9	64985387	64988013	+	64985387;64986067	64985956;64988013	ES	ENSMUST00000034960.14	known	0.00	0	69.0	0	73;65	n	0.00	0	56.5	0	53;60	n	0.00	0	100.5	0	100;101	n	0.00	0	63.0	0	60;66	n	0.03	3	105.0	3	98;112	y	0.00	0	59.0	0	65;53	n	0.00	0	120.0	0	117;123	n	0.00	0	50.5	0	43;58	n	0.00	0	53.0	0	52;54	n	0.01	1	93.5	1	87;100	n	0.00	0	66.0	0	71;61	n	0.02	2	82.5	2	90;75	y	ENSMUSG00000032393.16	Dpp8	chr9	protein_coding	dipeptidylpeptidase 8
known_NIR_20279	chr9	65032704	65034037	+	65032704	65034040	A3SS	ENSMUST00000213533.2	known	-	-	-	-	-	-	-	-	-	-	-	-	0.27	3	8	3	8	y	0.00	0	3	0	3	n	0.45	5	6	5	6	y	0.60	6	4	6	4	y	0.62	8	5	8	5	y	0.50	5	5	5	5	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032816.16	Igdcc4	chr9	protein_coding	immunoglobulin superfamily, DCC subclass, member 4
known_NIR_20280	chr9	65141122;65143223	65143119;65143923	+	65141122	65143923	cassetteExon	ENSMUST00000216702.2	known	0.02	1.0	48	0;2	48	n	0.00	0.0	29	0;0	29	n	0.06	2.5	36	0;5	36	n	0.07	3.0	40	2;4	40	y	0.07	3.5	50	4;3	50	y	0.05	1.0	18	0;2	18	n	0.09	2.5	24	2;3	24	y	0.14	5.0	31	4;6	31	y	0.01	0.5	38	0;1	38	n	0.06	4.5	65	3;6	65	y	0.07	2.5	33	1;4	33	n	0.08	4.0	48	3;5	48	y	ENSMUSG00000032392.12	Parp16	chr9	protein_coding	poly (ADP-ribose) polymerase family, member 16
known_NIR_20281	chr9	65217593	65223926	+	65217593;65219421	65219380;65223926	ES	ENSMUST00000015501.11	known	0.26	26	74.0	26	69;79	y	0.31	35	76.5	35	71;82	y	0.11	34	269.5	34	239;300	y	0.23	35	118.5	35	106;131	y	0.20	67	266.5	67	235;298	y	0.17	42	198.0	42	164;232	y	0.18	49	228.0	49	210;246	y	0.20	41	165.5	41	140;191	y	0.18	28	128.5	28	115;142	y	0.18	30	134.5	30	110;159	y	0.18	25	114.5	25	103;126	y	0.18	32	144.0	32	130;158	y	ENSMUSG00000015357.11	Clpx	chr9	protein_coding	caseinolytic mitochondrial matrix peptidase chaperone subunit
known_NIR_20282	chr9	65538520	65556631	+	65538179	65556631	A5SS	ENSMUST00000169003.8	known	0.23	16	55	16	55	y	0.26	14	40	14	40	y	0.11	6	47	6	47	y	0.15	10	58	10	58	y	0.21	19	71	19	71	y	0.28	9	23	9	23	y	0.24	21	65	21	65	y	0.15	6	35	6	35	y	0.26	14	40	14	40	y	0.17	18	87	18	87	y	0.22	16	57	16	57	y	0.19	18	78	18	78	y	ENSMUSG00000032387.16	Rbpms2	chr9	protein_coding	RNA binding protein with multiple splicing 2
known_NIR_20283	chr9	65538520	65556631	+	65538636	65556631	A5SS	ENSMUST00000213927.2	known	0.76	16	5	16	5	y	0.78	14	4	14	4	y	1.00	6	0	6	0	n	0.77	10	3	10	3	y	0.70	19	8	19	8	y	0.90	9	1	9	1	n	0.84	21	4	21	4	y	0.67	6	3	6	3	n	0.70	14	6	14	6	y	0.86	18	3	18	3	y	0.76	16	5	16	5	y	0.82	18	4	18	4	y	ENSMUSG00000032387.16	Rbpms2	chr9	protein_coding	RNA binding protein with multiple splicing 2
known_NIR_20284	chr9	65538636	65556631	+	65538179	65556631	A5SS	ENSMUST00000169003.8	known	0.08	5	55	5	55	y	0.09	4	40	4	40	y	0.00	0	47	0	47	n	0.05	3	58	3	58	y	0.10	8	71	8	71	y	0.04	1	23	1	23	n	0.06	4	65	4	65	y	0.08	3	35	3	35	y	0.13	6	40	6	40	y	0.03	3	87	3	87	y	0.08	5	57	5	57	y	0.05	4	78	4	78	y	ENSMUSG00000032387.16	Rbpms2	chr9	protein_coding	RNA binding protein with multiple splicing 2
known_NIR_20285	chr9	65557287	65558215	+	65557287;65557906	65557844;65558215	ES	ENSMUST00000169003.8	known	0.01	1	97.0	1	100;94	n	0.00	0	108.0	0	110;106	n	0.00	0	78.5	0	71;86	n	0.02	2	102.0	2	113;91	y	0.00	0	151.5	0	145;158	n	0.00	0	46.5	0	44;49	n	0.00	0	129.5	0	124;135	n	0.00	0	60.5	0	64;57	n	0.00	0	91.0	0	86;96	n	0.01	1	173.5	1	171;176	n	0.01	2	142.5	2	152;133	y	0.01	1	141.5	1	153;130	n	ENSMUSG00000032387.16	Rbpms2	chr9	protein_coding	RNA binding protein with multiple splicing 2
known_NIR_20286	chr9	65558365	65558829	+	65558365	65558943	A3SS	ENSMUST00000169003.8	known	0.99	108	1	108	1	n	1.00	96	0	96	0	n	1.00	82	0	82	0	n	1.00	87	0	87	0	n	0.99	154	2	154	2	y	1.00	44	0	44	0	n	0.99	126	1	126	1	n	1.00	73	0	73	0	n	0.97	71	2	71	2	y	0.99	159	2	159	2	y	1.00	130	0	130	0	n	0.96	126	5	126	5	y	ENSMUSG00000032387.16	Rbpms2	chr9	protein_coding	RNA binding protein with multiple splicing 2
known_NIR_20287	chr9	65595255	65595629	+	65595255	65596103	A3SS	ENSMUST00000128928.8	known	0.00	0	73	0	73	n	0.03	2	58	2	58	y	0.00	0	88	0	88	n	0.00	0	66	0	66	n	0.00	0	100	0	100	n	0.03	2	69	2	69	y	0.01	1	108	1	108	n	0.00	0	47	0	47	n	0.05	4	71	4	71	y	0.00	0	104	0	104	n	0.03	3	88	3	88	y	0.00	0	76	0	76	n	ENSMUSG00000040652.17	Oaz2	chr9	protein_coding	ornithine decarboxylase antizyme 2
known_NIR_20288	chr9	65740730	65758649	-	65746319	65758649	3pMXE	ENSMUST00000132380.2	known	0.08	8	90	8	90	y	0.08	7	78	7	78	y	0.10	11	102	11	102	y	0.08	9	98	9	98	y	0.11	17	142	17	142	y	0.10	9	79	9	79	y	0.14	21	126	21	126	y	0.10	7	63	7	63	y	0.19	20	85	20	85	y	0.09	12	124	12	124	y	0.10	11	99	11	99	y	0.08	12	134	12	134	y	ENSMUSG00000032386.16	Trip4	chr9	protein_coding	thyroid hormone receptor interactor 4
known_NIR_20289	chr9	65740730;65746319	65746217;65758649	-	65740730	65758649	cassetteExon	ENSMUST00000179395.8	known	0.92	88.0	8	86;90	8	y	0.91	68.0	7	58;78	7	y	0.90	95.0	11	88;102	11	y	0.93	111.5	9	125;98	9	y	0.89	141.5	17	141;142	17	y	0.89	74.5	9	70;79	9	y	0.84	114.0	21	102;126	21	y	0.91	69.5	7	76;63	7	y	0.82	93.5	20	102;85	20	y	0.92	132.5	12	141;124	12	y	0.90	102.5	11	106;99	11	y	0.92	139.0	12	144;134	12	y	ENSMUSG00000032386.16	Trip4	chr9	protein_coding	thyroid hormone receptor interactor 4
known_NIR_20290	chr9	66016910	66033725	-	66016910	66031889	5pMXE	ENSMUST00000034946.15	known	0.00	0	22	0	22	n	0.06	1	15	1	15	n	0.00	0	35	0	35	n	0.05	1	21	1	21	n	0.10	2	19	2	19	y	0.00	0	10	0	10	n	0.00	0	22	0	22	n	0.00	0	16	0	16	n	0.00	0	16	0	16	n	0.00	0	21	0	21	n	0.05	1	21	1	21	n	0.00	0	21	0	21	n	ENSMUSG00000032382.15	Snx1	chr9	protein_coding	sorting nexin 1
known_NIR_20291	chr9	66162658	66163990	+	66162658	66175961	A3SS	ENSMUST00000034944.9	known	0.00	0	18	0	18	n	0.00	0	37	0	37	n	0.00	0	13	0	13	n	0.00	0	19	0	19	n	0.00	0	29	0	29	n	0.00	0	6	0	6	n	0.08	2	24	2	24	y	0.00	0	15	0	15	n	0.00	0	23	0	23	n	0.00	0	25	0	25	n	0.00	0	36	0	36	n	0.00	0	28	0	28	n	ENSMUSG00000032380.10	Dapk2	chr9	protein_coding	death-associated protein kinase 2
known_NIR_20292	chr9	66369181	66370111	+	66369202	66370111	A5SS	ENSMUST00000042824.13	known	1.00	8	0	8	0	n	0.33	4	8	4	8	y	0.27	6	16	6	16	y	0.64	9	5	9	5	y	0.76	19	6	19	6	y	0.43	6	8	6	8	y	0.82	18	4	18	4	y	0.43	6	8	6	8	y	0.86	12	2	12	2	y	0.44	7	9	7	9	y	0.67	8	4	8	4	y	0.68	13	6	13	6	y	ENSMUSG00000038664.17	Herc1	chr9	protein_coding	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1
known_NIR_20293	chr9	66455237	66469836	-	66455237	66500066	A5SS	ENSMUST00000139547.8	known	0.97	30	1	30	1	n	1.00	20	0	20	0	n	0.96	54	2	54	2	y	0.93	50	4	50	4	y	1.00	62	0	62	0	n	1.00	22	0	22	0	n	0.95	40	2	40	2	y	0.84	26	5	26	5	y	1.00	37	0	37	0	n	1.00	60	0	60	0	n	0.98	47	1	47	1	n	0.96	64	3	64	3	y	ENSMUSG00000032376.13	Usp3	chr9	protein_coding	ubiquitin specific peptidase 3
known_NIR_20294	chr9	66853794	66854113	+	66853462	66854113	A5SS	ENSMUST00000040917.14	known	0.00	0	920	0	920	n	0.00	1	899	1	899	n	0.00	0	931	0	931	n	0.00	0	874	0	874	n	0.00	3	996	3	996	y	0.00	0	494	0	494	n	0.00	3	1010	3	1010	y	0.00	0	520	0	520	n	0.00	1	834	1	834	n	0.00	0	1232	0	1232	n	0.00	2	1091	2	1091	y	0.00	0	1049	0	1049	n	ENSMUSG00000036781.14	Rps27l	chr9	protein_coding	ribosomal protein S27-like
known_NIR_20295	chr9	66854979	66855923	+	66854979	66855921	A3SS	ENSMUST00000127896.8	known	0.05	2	36	2	36	y	0.06	2	30	2	30	y	0.03	1	35	1	35	n	0.00	0	33	0	33	n	0.05	2	36	2	36	y	0.00	0	14	0	14	n	0.00	0	27	0	27	n	0.00	0	13	0	13	n	0.00	0	28	0	28	n	0.00	0	32	0	32	n	0.00	0	33	0	33	n	0.00	0	31	0	31	n	ENSMUSG00000036781.14	Rps27l	chr9	protein_coding	ribosomal protein S27-like
known_NIR_20296	chr9	66854979	66855925	+	66854979	66855921	A3SS	ENSMUST00000127896.8	known	0.00	0	36	0	36	n	0.00	0	30	0	30	n	0.00	0	35	0	35	n	0.00	0	33	0	33	n	0.00	0	36	0	36	n	0.00	0	14	0	14	n	0.07	2	27	2	27	y	0.00	0	13	0	13	n	0.00	0	28	0	28	n	0.00	0	32	0	32	n	0.00	0	33	0	33	n	0.00	0	31	0	31	n	ENSMUSG00000036781.14	Rps27l	chr9	protein_coding	ribosomal protein S27-like
known_NIR_20297	chr9	66854979	66856611	+	66855999	66856611	5pMXE	ENSMUST00000123931.2	known	0.99	1775	23	1775	23	y	0.98	1934	35	1934	35	y	0.98	1634	39	1634	39	y	0.98	1552	34	1552	34	y	0.98	1821	32	1821	32	y	0.98	980	18	980	18	y	0.98	2067	41	2067	41	y	0.99	946	9	946	9	y	0.98	1665	26	1665	26	y	0.98	2424	46	2424	46	y	0.99	2154	28	2154	28	y	0.98	2054	33	2054	33	y	ENSMUSG00000036781.14	Rps27l	chr9	protein_coding	ribosomal protein S27-like
known_NIR_20298	chr9	66854979;66855999	66855921;66856611	+	66854979	66856611	cassetteExon	ENSMUST00000040917.14	known	0.02	29.5	1775	36;23	1775	y	0.02	32.5	1934	30;35	1934	y	0.02	37.0	1634	35;39	1634	y	0.02	33.5	1552	33;34	1552	y	0.02	34.0	1821	36;32	1821	y	0.02	16.0	980	14;18	980	y	0.02	34.0	2067	27;41	2067	y	0.01	11.0	946	13;9	946	y	0.02	27.0	1665	28;26	1665	y	0.02	39.0	2424	32;46	2424	y	0.01	30.5	2154	33;28	2154	y	0.02	32.0	2054	31;33	2054	y	ENSMUSG00000036781.14	Rps27l	chr9	protein_coding	ribosomal protein S27-like
known_NIR_20299	chr9	66854979;66855999	66855923;66856611	+	66854979	66856611	cassetteExon	ENSMUST00000040917.14	known	0.01	12.5	1775	2;23	1775	y	0.01	18.5	1934	2;35	1934	y	0.01	20.0	1634	1;39	1634	n	0.01	17.0	1552	0;34	1552	n	0.01	17.0	1821	2;32	1821	y	0.01	9.0	980	0;18	980	n	0.01	20.5	2067	0;41	2067	n	0.00	4.5	946	0;9	946	n	0.01	13.0	1665	0;26	1665	n	0.01	23.0	2424	0;46	2424	n	0.01	14.0	2154	0;28	2154	n	0.01	16.5	2054	0;33	2054	n	ENSMUSG00000036781.14	Rps27l	chr9	protein_coding	ribosomal protein S27-like
known_NIR_20300	chr9	66854979;66855999	66855925;66856611	+	66854979	66856611	cassetteExon	ENSMUST00000040917.14	known	0.01	11.5	1775	0;23	1775	n	0.01	17.5	1934	0;35	1934	n	0.01	19.5	1634	0;39	1634	n	0.01	17.0	1552	0;34	1552	n	0.01	16.0	1821	0;32	1821	n	0.01	9.0	980	0;18	980	n	0.01	21.5	2067	2;41	2067	y	0.00	4.5	946	0;9	946	n	0.01	13.0	1665	0;26	1665	n	0.01	23.0	2424	0;46	2424	n	0.01	14.0	2154	0;28	2154	n	0.01	16.5	2054	0;33	2054	n	ENSMUSG00000036781.14	Rps27l	chr9	protein_coding	ribosomal protein S27-like
known_NIR_20301	chr9	66863482;66875126	66874961;66877864	-	66863482	66877864	cassetteExon	ENSMUST00000215172.2	known	1.00	129.5	0	149;110	0	n	1.00	103.0	0	130;76	0	n	0.99	84.5	1	97;72	1	n	1.00	132.0	0	139;125	0	n	0.99	163.5	1	195;132	1	n	1.00	45.0	0	46;44	0	n	0.99	128.0	1	140;116	1	n	1.00	64.0	0	80;48	0	n	1.00	122.0	0	130;114	0	n	0.99	171.5	2	174;169	2	y	0.98	124.5	2	140;109	2	y	0.99	143.0	1	143;143	1	n	ENSMUSG00000032370.9	Lactb	chr9	protein_coding	lactamase, beta
known_NIR_20302	chr9	66935449	66938311	-	66930723	66938311	A3SS	ENSMUST00000113696.8	known	0.03	3	93	3	93	y	0.01	1	90	1	90	n	0.01	3	276	3	276	y	0.00	0	101	0	101	n	0.00	0	143	0	143	n	0.00	0	101	0	101	n	0.03	4	127	4	127	y	0.00	0	106	0	106	n	0.00	0	89	0	89	n	0.00	0	78	0	78	n	0.04	3	71	3	71	y	0.00	0	80	0	80	n	ENSMUSG00000032366.16	Tpm1	chr9	protein_coding	tropomyosin 1, alpha
known_NIR_20303	chr9	66935449	66938311	-	66935449;66937024	66936946;66938311	ES	ENSMUST00000113685.10	known	0.43	3	4.0	3	4;4	y	1.00	1	0.0	1	0;0	n	0.67	3	1.5	3	0;3	n	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	0.00	0	2.5	0	2;3	n	0.01	4	546.0	4	508;584	y	0.00	0	2.0	0	2;2	n	0.00	0	1.5	0	1;2	n	0.00	0	1.0	0	2;0	n	0.60	3	2.0	3	1;3	n	-	-	-	-	-	-	ENSMUSG00000032366.16	Tpm1	chr9	protein_coding	tropomyosin 1, alpha
known_NIR_20304	chr9	66935449	66938311	-	66937024	66938311	3pMXE	ENSMUST00000030185.5	known	0.43	3	4	3	4	n	1.00	1	0	1	0	n	0.50	3	3	3	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.01	4	584	4	584	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	3	3	3	3	n	-	-	-	-	-	-	ENSMUSG00000032366.16	Tpm1	chr9	protein_coding	tropomyosin 1, alpha
known_NIR_20305	chr9	66937024	66938311	-	66930723	66938311	A3SS	ENSMUST00000113696.8	known	0.04	4	93	4	93	y	0.00	0	90	0	90	n	0.01	3	276	3	276	y	0.00	0	101	0	101	n	0.00	0	143	0	143	n	0.03	3	101	3	101	y	0.82	584	127	584	127	y	0.02	2	106	2	106	y	0.02	2	89	2	89	y	0.00	0	78	0	78	n	0.04	3	71	3	71	y	0.00	0	80	0	80	n	ENSMUSG00000032366.16	Tpm1	chr9	protein_coding	tropomyosin 1, alpha
known_NIR_20306	chr9	66938796	66940076	-	66938796;66939308	66939233;66940076	ES	ENSMUST00000113705.8	known	0.00	0	23.0	0	31;15	n	0.24	4	12.5	4	11;14	y	0.16	8	41.0	8	46;36	y	0.04	1	23.5	1	23;24	n	0.07	3	42.0	3	48;36	y	0.08	2	22.0	2	24;20	y	0.00	3	902.0	3	966;838	y	0.24	5	16.0	5	18;14	y	0.00	0	22.5	0	26;19	n	0.07	2	27.5	2	31;24	y	0.10	2	19.0	2	23;15	y	0.06	1	17.0	1	20;14	n	ENSMUSG00000032366.16	Tpm1	chr9	protein_coding	tropomyosin 1, alpha
known_NIR_20307	chr9	66938796	66940076	-	66938796;66939823	66939748;66940076	ES	ENSMUST00000113696.8	known	0.00	0	73.0	0	76;70	n	0.05	4	84.0	4	92;76	y	0.03	8	229.0	8	249;209	y	0.01	1	84.5	1	95;74	n	0.02	3	156.5	3	156;157	y	0.02	2	82.5	2	83;82	y	0.02	3	122.5	3	150;95	y	0.05	5	87.0	5	96;78	y	0.00	0	68.0	0	72;64	n	0.03	2	72.5	2	70;75	y	0.03	2	69.0	2	76;62	y	0.01	1	79.5	1	97;62	n	ENSMUSG00000032366.16	Tpm1	chr9	protein_coding	tropomyosin 1, alpha
known_NIR_20308	chr9	66938796;66939308	66939233;66940076	-	66938796;66939823	66939748;66940076	MXE	ENSMUST00000113696.8	known	0.24	23.0	73.0	31;15	76;70	y	0.13	12.5	84.0	11;14	92;76	y	0.15	41.0	229.0	46;36	249;209	y	0.22	23.5	84.5	23;24	95;74	y	0.21	42.0	156.5	48;36	156;157	y	0.21	22.0	82.5	24;20	83;82	y	0.88	902.0	122.5	966;838	150;95	y	0.16	16.0	87.0	18;14	96;78	y	0.25	22.5	68.0	26;19	72;64	y	0.28	27.5	72.5	31;24	70;75	y	0.22	19.0	69.0	23;15	76;62	y	0.18	17.0	79.5	20;14	97;62	y	ENSMUSG00000032366.16	Tpm1	chr9	protein_coding	tropomyosin 1, alpha
known_NIR_20309	chr9	66943410	66955068	-	66943410	66950860	5pMXE	ENSMUST00000113696.8	known	0.00	0	87	0	87	n	0.00	0	60	0	60	n	0.00	0	211	0	211	n	0.00	0	83	0	83	n	0.03	4	150	4	150	y	0.03	3	86	3	86	y	0.89	875	103	875	103	y	0.00	0	75	0	75	n	0.00	0	66	0	66	n	0.01	1	84	1	84	n	0.00	0	64	0	64	n	0.00	0	59	0	59	n	ENSMUSG00000032366.16	Tpm1	chr9	protein_coding	tropomyosin 1, alpha
known_NIR_20310	chr9	66943410	66955406	-	66943410	66950860	5pMXE	ENSMUST00000113696.8	known	0.01	1	87	1	87	n	0.02	1	60	1	60	n	0.01	2	211	2	211	y	0.01	1	83	1	83	n	0.04	6	150	6	150	y	0.02	2	86	2	86	y	0.10	11	103	11	103	y	0.00	0	75	0	75	n	0.00	0	66	0	66	n	0.00	0	84	0	84	n	0.00	0	64	0	64	n	0.00	0	59	0	59	n	ENSMUSG00000032366.16	Tpm1	chr9	protein_coding	tropomyosin 1, alpha
known_NIR_20311	chr9	66943410;66955193	66955068;66956301	-	66943410;66955531	66955406;66956301	MXE	ENSMUST00000113705.8	known	0.00	0.0	1.5	0;0	1;2	n	0.00	0.0	1.5	0;0	1;2	n	0.40	1.0	1.5	0;2	2;1	n	0.00	0.0	1.0	0;0	1;1	n	0.39	3.5	5.5	4;3	6;5	y	0.62	2.5	1.5	3;2	2;1	n	0.98	790.5	17.5	875;706	11;24	y	-	-	-	-	-	-	0.00	0.0	2.0	0;0	0;4	n	1.00	1.0	0.0	1;1	0;0	n	1.00	0.5	0.0	0;1	0;0	n	0.00	0.0	0.5	0;0	0;1	n	ENSMUSG00000032366.16	Tpm1	chr9	protein_coding	tropomyosin 1, alpha
known_NIR_20312	chr9	69307863	69314547	+	69307863	69314399	A3SS	ENSMUST00000034761.15	known	0.27	3	8	3	8	y	0.50	1	1	1	1	n	0.40	2	3	2	3	n	0.00	0	5	0	5	n	0.40	4	6	4	6	y	0.25	2	6	2	6	n	0.17	1	5	1	5	n	0.15	2	11	2	11	y	0.00	0	6	0	6	n	0.27	3	8	3	8	y	0.29	2	5	2	5	n	0.44	4	5	4	5	n	ENSMUSG00000032235.16	Ice2	chr9	protein_coding	interactor of little elongation complex ELL subunit 2
known_NIR_20313	chr9	69904539	69906376	+	69905588	69906376	5pMXE	ENSMUST00000133307.2	known	0.82	73	16	73	16	y	0.83	43	9	43	9	y	0.80	102	26	102	26	y	0.88	73	10	73	10	y	0.86	112	18	112	18	y	0.78	47	13	47	13	y	0.84	82	16	82	16	y	0.86	83	13	83	13	y	0.79	46	12	46	12	y	0.88	66	9	66	9	y	0.91	53	5	53	5	y	0.90	86	10	86	10	y	ENSMUSG00000011958.18	Bnip2	chr9	protein_coding	BCL2/adenovirus E1B interacting protein 2
known_NIR_20314	chr9	69904539;69905588	69905530;69906376	+	69904539	69906376	cassetteExon	ENSMUST00000034754.12	known	0.17	14.5	73	13;16	73	y	0.21	11.5	43	14;9	43	y	0.18	22.5	102	19;26	102	y	0.13	11.0	73	12;10	73	y	0.16	21.0	112	24;18	112	y	0.22	13.0	47	13;13	47	y	0.16	16.0	82	16;16	82	y	0.11	10.0	83	7;13	83	y	0.23	13.5	46	15;12	46	y	0.15	12.0	66	15;9	66	y	0.13	8.0	53	11;5	53	y	0.14	14.0	86	18;10	86	y	ENSMUSG00000011958.18	Bnip2	chr9	protein_coding	BCL2/adenovirus E1B interacting protein 2
known_NIR_20315	chr9	69904539;69905615	69905530;69906376	+	69904539	69906376	cassetteExon	ENSMUST00000034754.12	known	0.10	8.0	73	13;3	73	y	0.17	9.0	43	14;4	43	y	0.12	13.5	102	19;8	102	y	0.11	9.0	73	12;6	73	y	0.13	17.0	112	24;10	112	y	0.17	9.5	47	13;6	47	y	0.12	11.5	82	16;7	82	y	0.05	4.0	83	7;1	83	n	0.19	10.5	46	15;6	46	y	0.13	10.0	66	15;5	66	y	0.09	5.5	53	11;0	53	n	0.13	12.5	86	18;7	86	y	ENSMUSG00000011958.18	Bnip2	chr9	protein_coding	BCL2/adenovirus E1B interacting protein 2
known_NIR_20316	chr9	69905588	69906376	+	69905615	69906376	A5SS	ENSMUST00000154772.8	known	0.84	16	3	16	3	y	0.69	9	4	9	4	y	0.76	26	8	26	8	y	0.62	10	6	10	6	y	0.64	18	10	18	10	y	0.68	13	6	13	6	y	0.70	16	7	16	7	y	0.93	13	1	13	1	n	0.67	12	6	12	6	y	0.64	9	5	9	5	y	1.00	5	0	5	0	n	0.59	10	7	10	7	y	ENSMUSG00000011958.18	Bnip2	chr9	protein_coding	BCL2/adenovirus E1B interacting protein 2
known_NIR_20317	chr9	69910949	69914346	+	69910949	69911588	3pMXE	ENSMUST00000137472.2	known	0.86	132	22	132	22	y	0.87	111	17	111	17	y	0.84	197	38	197	38	y	0.87	136	21	136	21	y	0.76	166	52	166	52	y	0.85	94	17	94	17	y	0.80	182	45	182	45	y	0.78	121	35	121	35	y	0.83	86	18	86	18	y	0.76	125	39	125	39	y	0.79	83	22	83	22	y	0.80	139	35	139	35	y	ENSMUSG00000011958.18	Bnip2	chr9	protein_coding	BCL2/adenovirus E1B interacting protein 2
known_NIR_20318	chr9	69910949	69914346	+	69910949;69911623	69911588;69914346	ES	ENSMUST00000034754.12	known	0.83	132	27.5	132	22;33	y	0.85	111	19.0	111	17;21	y	0.82	197	42.5	197	38;47	y	0.87	136	19.5	136	21;18	y	0.74	166	59.0	166	52;66	y	0.85	94	16.5	94	17;16	y	0.79	182	48.0	182	45;51	y	0.79	121	32.5	121	35;30	y	0.85	86	15.0	86	18;12	y	0.76	125	38.5	125	39;38	y	0.79	83	22.5	83	22;23	y	0.81	139	32.0	139	35;29	y	ENSMUSG00000011958.18	Bnip2	chr9	protein_coding	BCL2/adenovirus E1B interacting protein 2
known_NIR_20319	chr9	69919943;69922297	69922205;69922574	+	69919943	69922574	cassetteExon	ENSMUST00000118198.8	known	0.00	0.0	176	0;0	176	n	0.03	5.0	184	2;8	184	y	0.05	21.5	405	7;36	405	y	0.01	3.0	220	0;6	220	n	0.02	5.5	273	3;8	273	y	0.03	8.0	233	4;12	233	y	0.02	5.0	274	1;9	274	n	0.04	10.5	240	3;18	240	y	0.01	1.5	132	0;3	132	n	0.01	3.0	217	0;6	217	n	0.01	2.0	145	0;4	145	n	0.02	3.5	157	2;5	157	y	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
known_NIR_20320	chr9	69920234	69922574	+	69919943	69922574	A5SS	ENSMUST00000118198.8	known	0.00	0	176	0	176	n	0.00	0	184	0	184	n	0.03	12	405	12	405	y	0.01	3	220	3	220	y	0.00	1	273	1	273	n	0.01	2	233	2	233	y	0.01	2	274	2	274	y	0.04	9	240	9	240	y	0.00	0	132	0	132	n	0.00	0	217	0	217	n	0.01	1	145	1	145	n	0.00	0	157	0	157	n	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
known_NIR_20321	chr9	69921773	69922574	+	69920234	69922574	A5SS	ENSMUST00000119413.8	known	-	-	-	-	-	-	1.00	1	0	1	0	n	0.33	6	12	6	12	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.10	1	9	1	9	n	1.00	1	0	1	0	n	1.00	3	0	3	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
known_NIR_20322	chr9	69922297	69922574	+	69920234	69922574	A5SS	ENSMUST00000119413.8	known	-	-	-	-	-	-	1.00	8	0	8	0	n	0.75	36	12	36	12	y	0.67	6	3	6	3	n	0.89	8	1	8	1	n	0.86	12	2	12	2	y	0.82	9	2	9	2	y	0.67	18	9	18	9	y	1.00	3	0	3	0	n	1.00	6	0	6	0	n	0.80	4	1	4	1	n	1.00	5	0	5	0	n	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
known_NIR_20323	chr9	69922692	69924101	+	69923219	69924101	5pMXE	ENSMUST00000148239.8	known	0.84	208	40	208	40	y	0.84	216	40	216	40	y	0.96	577	23	577	23	y	0.82	223	48	223	48	y	0.93	328	24	328	24	y	0.95	287	14	287	14	y	0.93	336	26	336	26	y	0.94	291	18	291	18	y	0.88	136	18	136	18	y	0.92	216	20	216	20	y	0.92	164	15	164	15	y	0.91	211	22	211	22	y	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
known_NIR_20324	chr9	69922692;69923219	69923050;69924101	+	69922692	69924101	cassetteExon	ENSMUST00000118198.8	known	0.12	29.0	208	18;40	208	y	0.12	30.5	216	21;40	216	y	0.04	22.0	577	21;23	577	y	0.14	37.0	223	26;48	223	y	0.07	26.0	328	28;24	328	y	0.03	10.0	287	6;14	287	y	0.07	27.0	336	28;26	336	y	0.04	13.0	291	8;18	291	y	0.11	16.0	136	14;18	136	y	0.07	16.0	216	12;20	216	y	0.09	15.5	164	16;15	164	y	0.08	19.0	211	16;22	211	y	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
known_NIR_20325	chr9	69924205	69924355	+	69924205	69929719	A3SS	ENSMUST00000119905.8	known	0.65	13	7	13	7	y	0.89	24	3	24	3	y	0.58	18	13	18	13	y	0.86	24	4	24	4	y	0.70	7	3	7	3	y	0.55	6	5	6	5	y	0.62	10	6	10	6	y	0.22	2	7	2	7	n	1.00	6	0	6	0	n	0.94	15	1	15	1	n	0.80	12	3	12	3	y	0.80	12	3	12	3	y	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
known_NIR_20326	chr9	69924205	69925962	+	69924205	69929719	A3SS	ENSMUST00000119905.8	known	0.71	17	7	17	7	y	0.81	13	3	13	3	y	0.41	9	13	9	13	y	0.73	11	4	11	4	y	0.73	8	3	8	3	y	0.62	8	5	8	5	y	0.70	14	6	14	6	y	0.56	9	7	9	7	y	1.00	7	0	7	0	n	0.92	11	1	11	1	n	0.75	9	3	9	3	y	0.62	5	3	5	3	n	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
known_NIR_20327	chr9	69924205	69925962	+	69924473	69925962	A5SS	ENSMUST00000145816.2	known	0.74	17	6	17	6	y	0.59	13	9	13	9	y	0.60	9	6	9	6	y	0.73	11	4	11	4	y	0.73	8	3	8	3	y	1.00	8	0	8	0	n	0.88	14	2	14	2	y	0.69	9	4	9	4	y	1.00	7	0	7	0	n	0.79	11	3	11	3	y	0.69	9	4	9	4	y	0.56	5	4	5	4	n	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
known_NIR_20328	chr9	69924205	69926671	+	69924473	69926671	A5SS	ENSMUST00000131078.8	known	0.88	220	31	220	31	y	0.76	257	82	257	82	y	0.91	673	64	673	64	y	0.79	240	62	240	62	y	0.86	353	58	353	58	y	0.91	309	32	309	32	y	0.84	348	64	348	64	y	0.90	311	35	311	35	y	0.91	180	17	180	17	y	0.85	245	43	245	43	y	0.91	197	20	197	20	y	0.82	225	48	225	48	y	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
known_NIR_20329	chr9	69924205	69926671	+	69926100	69926671	A5SS&ES	ENSMUST00000145816.2	known	0.87	220	33	220	33	y	0.87	257	38	257	38	y	0.96	673	30	673	30	y	0.88	240	34	240	34	y	0.90	353	38	353	38	y	0.93	309	23	309	23	y	0.89	348	43	348	43	y	0.95	311	17	311	17	y	0.92	180	16	180	16	y	0.93	245	18	245	18	y	0.89	197	25	197	25	y	0.92	225	20	225	20	y	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
known_NIR_20330	chr9	69924205	69929719	+	69924205	69926671	3pMXE	ENSMUST00000140305.8	known	0.03	7	220	7	220	y	0.01	3	257	3	257	y	0.02	13	673	13	673	y	0.02	4	240	4	240	y	0.01	3	353	3	353	y	0.02	5	309	5	309	y	0.02	6	348	6	348	y	0.02	7	311	7	311	y	0.00	0	180	0	180	n	0.00	1	245	1	245	n	0.01	3	197	3	197	y	0.01	3	225	3	225	y	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
known_NIR_20331	chr9	69924205	69929719	+	69924205;69926797	69926671;69929719	ES	ENSMUST00000118198.8	known	0.02	7	298.0	7	220;376	y	0.01	3	396.0	3	257;535	y	0.02	13	830.5	13	673;988	y	0.01	4	320.0	4	240;400	y	0.01	3	479.0	3	353;605	y	0.01	5	424.0	5	309;539	y	0.01	6	484.5	6	348;621	y	0.02	7	400.0	7	311;489	y	0.00	0	239.0	0	180;298	n	0.00	1	326.5	1	245;408	n	0.01	3	286.0	3	197;375	y	0.01	3	332.5	3	225;440	y	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
known_NIR_20332	chr9	69924205	69929719	+	69926797	69929719	A5SS&ES	ENSMUST00000131078.8	known	0.02	7	376	7	376	y	0.01	3	535	3	535	y	0.01	13	988	13	988	y	0.01	4	400	4	400	y	0.00	3	605	3	605	y	0.01	5	539	5	539	y	0.01	6	621	6	621	y	0.01	7	489	7	489	y	0.00	0	298	0	298	n	0.00	1	408	1	408	n	0.01	3	375	3	375	y	0.01	3	440	3	440	y	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
known_NIR_20333	chr9	69924205;69924473	69924355;69925962	+	69924205	69925962	cassetteExon	ENSMUST00000116552.8	known	0.36	9.5	17	13;6	17	y	0.56	16.5	13	24;9	13	y	0.57	12.0	9	18;6	9	y	0.56	14.0	11	24;4	11	y	0.38	5.0	8	7;3	8	y	0.27	3.0	8	6;0	8	n	0.30	6.0	14	10;2	14	y	0.25	3.0	9	2;4	9	y	0.30	3.0	7	6;0	7	n	0.45	9.0	11	15;3	11	y	0.47	8.0	9	12;4	9	y	0.62	8.0	5	12;4	5	y	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
known_NIR_20334	chr9	69924205;69924473	69924355;69926671	+	69924205	69926671	cassetteExon	ENSMUST00000118198.8	known	0.09	22.0	220	13;31	220	y	0.17	53.0	257	24;82	257	y	0.06	41.0	673	18;64	673	y	0.15	43.0	240	24;62	240	y	0.08	32.5	353	7;58	353	y	0.06	19.0	309	6;32	309	y	0.10	37.0	348	10;64	348	y	0.06	18.5	311	2;35	311	y	0.06	11.5	180	6;17	180	y	0.11	29.0	245	15;43	245	y	0.08	16.0	197	12;20	197	y	0.12	30.0	225	12;48	225	y	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
known_NIR_20335	chr9	69924205;69924473	69924355;69926671	+	69924205;69926100	69925962;69926671	MXE	ENSMUST00000116552.8	known	0.47	22.0	25.0	13;31	17;33	y	0.68	53.0	25.5	24;82	13;38	y	0.68	41.0	19.5	18;64	9;30	y	0.66	43.0	22.5	24;62	11;34	y	0.59	32.5	23.0	7;58	8;38	y	0.55	19.0	15.5	6;32	8;23	y	0.56	37.0	28.5	10;64	14;43	y	0.59	18.5	13.0	2;35	9;17	y	0.50	11.5	11.5	6;17	7;16	y	0.67	29.0	14.5	15;43	11;18	y	0.48	16.0	17.0	12;20	9;25	y	0.71	30.0	12.5	12;48	5;20	y	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
known_NIR_20336	chr9	69924205;69926100	69925962;69926671	+	69924205	69926671	cassetteExon	ENSMUST00000118198.8	known	0.10	25.0	220	17;33	220	y	0.09	25.5	257	13;38	257	y	0.03	19.5	673	9;30	673	y	0.09	22.5	240	11;34	240	y	0.06	23.0	353	8;38	353	y	0.05	15.5	309	8;23	309	y	0.08	28.5	348	14;43	348	y	0.04	13.0	311	9;17	311	y	0.06	11.5	180	7;16	180	y	0.06	14.5	245	11;18	245	y	0.08	17.0	197	9;25	197	y	0.05	12.5	225	5;20	225	y	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
known_NIR_20337	chr9	69924473;69926100	69925962;69926671	+	69924473	69926671	cassetteExon	ENSMUST00000131078.8	known	0.39	19.5	31	6;33	31	y	0.22	23.5	82	9;38	82	y	0.22	18.0	64	6;30	64	y	0.23	19.0	62	4;34	62	y	0.26	20.5	58	3;38	58	y	0.26	11.5	32	0;23	32	n	0.26	22.5	64	2;43	64	y	0.23	10.5	35	4;17	35	y	0.32	8.0	17	0;16	17	n	0.20	10.5	43	3;18	43	y	0.42	14.5	20	4;25	20	y	0.20	12.0	48	4;20	48	y	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
known_NIR_20338	chr9	70336961	70338213	-	70336937	70338213	A3SS	ENSMUST00000213208.2	known	0.41	13	19	13	19	y	0.28	7	18	7	18	y	0.36	13	23	13	23	y	0.28	8	21	8	21	y	0.30	13	31	13	31	y	0.18	3	14	3	14	y	0.30	6	14	6	14	y	0.33	9	18	9	18	y	0.34	10	19	10	19	y	0.32	13	28	13	28	y	0.23	7	23	7	23	y	0.17	7	34	7	34	y	ENSMUSG00000032217.14	Rnf111	chr9	protein_coding	ring finger 111
known_NIR_20339	chr9	70357820	70360783	-	70357823	70360783	A3SS	ENSMUST00000213208.2	known	0.38	6	10	6	10	y	0.58	7	5	7	5	y	0.52	11	10	11	10	y	0.44	14	18	14	18	y	0.47	14	16	14	16	y	0.26	5	14	5	14	y	0.48	10	11	10	11	y	0.36	4	7	4	7	y	0.30	6	14	6	14	y	0.48	14	15	14	15	y	0.61	11	7	11	7	y	0.30	8	19	8	19	y	ENSMUSG00000032217.14	Rnf111	chr9	protein_coding	ring finger 111
known_NIR_20340	chr9	70383950	70410741	-	70383950	70410222	5pMXE	ENSMUST00000213647.2	known	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	21	0	21	n	0.00	0	18	0	18	n	0.18	4	18	4	18	y	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.09	1	10	1	10	n	0.15	2	11	2	11	y	0.43	9	12	9	12	y	0.00	0	8	0	8	n	0.10	2	18	2	18	y	ENSMUSG00000032217.14	Rnf111	chr9	protein_coding	ring finger 111
known_NIR_20341	chr9	70383950	70410741	-	70383950;70410284	70410222;70410741	ES	ENSMUST00000034739.12	known	0.00	0	6.5	0	7;6	n	0.00	0	4.0	0	6;2	n	0.00	0	15.5	0	21;10	n	0.00	0	14.0	0	18;10	n	0.21	4	15.5	4	18;13	y	0.00	0	8.0	0	10;6	n	0.00	0	4.0	0	7;1	n	0.15	1	5.5	1	10;1	n	0.22	2	7.0	2	11;3	y	0.47	9	10.0	9	12;8	y	0.00	0	5.0	0	8;2	n	0.15	2	11.0	2	18;4	y	ENSMUSG00000032217.14	Rnf111	chr9	protein_coding	ring finger 111
known_NIR_20342	chr9	70410284	70410741	-	70410284	70410514	5pMXE	ENSMUST00000215848.2	known	1.00	6	0	6	0	n	0.67	2	1	2	1	n	0.83	10	2	10	2	y	0.83	10	2	10	2	y	1.00	13	0	13	0	n	1.00	6	0	6	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.43	3	4	3	4	n	1.00	8	0	8	0	n	1.00	2	0	2	0	n	1.00	4	0	4	0	n	ENSMUSG00000032217.14	Rnf111	chr9	protein_coding	ring finger 111
known_NIR_20343	chr9	70466383	70469058	+	70466383	70479431	A3SS	ENSMUST00000213808.2	known	1.00	23	0	23	0	n	1.00	27	0	27	0	n	1.00	52	0	52	0	n	1.00	30	0	30	0	n	1.00	57	0	57	0	n	0.95	20	1	20	1	n	0.96	51	2	51	2	y	1.00	28	0	28	0	n	1.00	33	0	33	0	n	0.98	48	1	48	1	n	1.00	30	0	30	0	n	1.00	55	0	55	0	n	ENSMUSG00000032212.11	Sltm	chr9	protein_coding	SAFB-like, transcription modulator
known_NIR_20344	chr9	70470143	70479431	+	70466383	70479431	A5SS	ENSMUST00000213808.2	known	1.00	26	0	26	0	n	1.00	25	0	25	0	n	1.00	39	0	39	0	n	1.00	42	0	42	0	n	1.00	46	0	46	0	n	0.95	18	1	18	1	n	0.95	37	2	37	2	y	1.00	22	0	22	0	n	1.00	23	0	23	0	n	0.97	35	1	35	1	n	1.00	15	0	15	0	n	1.00	30	0	30	0	n	ENSMUSG00000032212.11	Sltm	chr9	protein_coding	SAFB-like, transcription modulator
known_NIR_20345	chr9	70479458	70480739	+	70479458	70480793	A3SS	ENSMUST00000216816.2	known	0.63	17	10	17	10	y	0.67	10	5	10	5	y	0.69	24	11	24	11	y	0.56	18	14	18	14	y	0.74	20	7	20	7	y	0.50	10	10	10	10	y	0.56	19	15	19	15	y	0.79	15	4	15	4	y	0.56	10	8	10	8	y	0.68	21	10	21	10	y	0.59	10	7	10	7	y	0.54	13	11	13	11	y	ENSMUSG00000032212.11	Sltm	chr9	protein_coding	SAFB-like, transcription modulator
known_NIR_20346	chr9	70487337	70487414	+	70487337	70487449	A3SS	ENSMUST00000216816.2	known	0.02	1	41	1	41	n	0.00	0	34	0	34	n	0.02	1	63	1	63	n	0.02	1	52	1	52	n	0.07	4	56	4	56	y	0.00	0	23	0	23	n	0.02	1	47	1	47	n	0.00	0	35	0	35	n	0.00	0	33	0	33	n	0.00	0	55	0	55	n	0.00	0	34	0	34	n	0.03	2	75	2	75	y	ENSMUSG00000032212.11	Sltm	chr9	protein_coding	SAFB-like, transcription modulator
known_NIR_20347	chr9	70488746	70492035	+	70488746;70491394	70491214;70492035	ES	ENSMUST00000216816.2	known	0.00	0	52.0	0	66;38	n	0.11	5	41.5	5	48;35	y	0.09	7	67.5	7	63;72	y	0.00	0	50.5	0	52;49	n	0.06	4	64.5	4	76;53	y	0.00	0	27.0	0	26;28	n	0.07	5	63.0	5	72;54	y	0.00	0	34.0	0	44;24	n	0.02	1	47.5	1	56;39	n	0.07	4	50.5	4	48;53	y	0.04	2	47.0	2	52;42	y	0.06	3	50.5	3	56;45	y	ENSMUSG00000032212.11	Sltm	chr9	protein_coding	SAFB-like, transcription modulator
known_NIR_20348	chr9	70512568	70514740	-	70512571	70514740	A3SS	ENSMUST00000049031.6	known	1.00	2	0	2	0	n	-	-	-	-	-	-	0.22	4	14	4	14	y	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.20	1	4	1	4	n	0.11	2	17	2	17	y	0.00	0	8	0	8	n	0.00	0	14	0	14	n	ENSMUSG00000042444.11	Mindy2	chr9	protein_coding	MINDY lysine 48 deubiquitinase 2
known_NIR_20349	chr9	70728180	70730655	-	70727824	70730655	A3SS	ENSMUST00000034731.10	known	0.22	35	126	35	126	y	0.20	31	122	31	122	y	0.22	11	40	11	40	y	0.19	40	167	40	167	y	0.17	22	108	22	108	y	0.37	7	12	7	12	y	0.20	30	119	30	119	y	0.33	9	18	9	18	y	0.25	58	175	58	175	y	0.28	101	263	101	263	y	0.20	57	222	57	222	y	0.21	51	192	51	192	y	ENSMUSG00000032207.11	Lipc	chr9	protein_coding	lipase, hepatic
known_NIR_20350	chr9	71030290;71034112	71033963;71037703	-	71030290	71037703	cassetteExon	ENSMUST00000074465.9	known	0.01	3.5	696	0;7	696	n	0.01	4.0	622	2;6	622	y	0.01	3.0	359	3;3	359	y	0.01	6.5	904	3;10	904	y	0.01	8.0	1122	0;16	1122	n	0.00	0.0	220	0;0	220	n	0.00	3.0	1021	2;4	1021	y	0.01	2.5	372	1;4	372	n	0.01	4.5	653	0;9	653	n	0.01	11.5	1229	6;17	1229	y	0.00	2.0	687	0;4	687	n	0.00	2.5	871	1;4	871	n	ENSMUSG00000032204.14	Aqp9	chr9	protein_coding	aquaporin 9
known_NIR_20351	chr9	71045496	71069599	-	71045496	71070255	A5SS	ENSMUST00000074465.9	known	0.00	0	632	0	632	n	0.00	0	535	0	535	n	0.00	0	339	0	339	n	0.00	2	993	2	993	y	0.00	0	1065	0	1065	n	0.00	0	216	0	216	n	0.00	0	923	0	923	n	0.00	0	386	0	386	n	0.00	0	638	0	638	n	0.00	1	1109	1	1109	n	0.00	0	610	0	610	n	0.00	1	803	1	803	n	ENSMUSG00000032204.14	Aqp9	chr9	protein_coding	aquaporin 9
known_NIR_20352	chr9	71391087	71392017	-	71391087	71392966	A5SS	ENSMUST00000034720.12	known	0.04	5	122	5	122	y	0.02	2	102	2	102	y	0.01	2	147	2	147	y	0.02	4	169	4	169	y	0.04	8	214	8	214	y	0.07	4	57	4	57	y	0.04	7	192	7	192	y	0.08	7	86	7	86	y	0.01	1	143	1	143	n	0.10	20	183	20	183	y	0.02	4	172	4	172	y	0.02	3	164	3	164	y	ENSMUSG00000032199.14	Polr2m	chr9	protein_coding	polymerase (RNA) II (DNA directed) polypeptide M
known_NIR_20353	chr9	71563534;71612642	71612430;71622605	-	71563534	71622605	cassetteExon	ENSMUST00000121322.8	known	1.00	62.5	0	70;55	0	n	1.00	52.0	0	59;45	0	n	1.00	97.0	0	101;93	0	n	1.00	86.5	0	85;88	0	n	0.98	128.5	2	137;120	2	y	1.00	52.0	0	46;58	0	n	1.00	86.5	0	100;73	0	n	1.00	85.5	0	75;96	0	n	0.98	59.0	1	63;55	1	n	1.00	109.0	0	123;95	0	n	1.00	59.0	0	65;53	0	n	1.00	76.0	0	88;64	0	n	ENSMUSG00000032232.15	Cgnl1	chr9	protein_coding	cingulin-like 1
known_NIR_20354	chr9	71633364	71678314	-	71633364	71678791	A5SS	ENSMUST00000121322.8	known	0.00	0	18	0	18	n	0.25	2	6	2	6	n	0.10	3	26	3	26	y	0.11	4	31	4	31	y	0.00	0	43	0	43	n	0.08	2	23	2	23	y	0.14	3	18	3	18	y	0.00	0	13	0	13	n	0.00	0	29	0	29	n	0.03	1	33	1	33	n	0.00	0	18	0	18	n	0.17	2	10	2	10	y	ENSMUSG00000032232.15	Cgnl1	chr9	protein_coding	cingulin-like 1
known_NIR_20355	chr9	71775560	71777356	-	71775560;71776352	71776281;71777356	ES	ENSMUST00000183404.8	known	0.63	6	3.5	6	2;5	y	0.70	14	6.0	14	3;9	y	0.85	26	4.5	26	5;4	y	0.70	7	3.0	7	1;5	n	0.53	15	13.5	15	12;15	y	0.80	18	4.5	18	5;4	y	0.48	10	11.0	10	14;8	y	0.61	10	6.5	10	4;9	y	0.71	6	2.5	6	0;5	n	0.67	19	9.5	19	5;14	y	0.62	10	6.0	10	4;8	y	0.65	15	8.0	15	9;7	y	ENSMUSG00000032228.17	Tcf12	chr9	protein_coding	transcription factor 12
known_NIR_20356	chr9	71851300	72016958	-	71851300	71907698	5pMXE	ENSMUST00000183647.8	known	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	31	0	31	n	0.00	0	15	0	15	n	0.00	0	29	0	29	n	0.00	0	13	0	13	n	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.09	2	20	2	20	y	0.00	0	12	0	12	n	0.00	0	17	0	17	n	ENSMUSG00000032228.17	Tcf12	chr9	protein_coding	transcription factor 12
known_NIR_20357	chr9	71851300	72016958	-	71922993	72016958	A3SS&ES	ENSMUST00000183492.8	known	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	30	0	30	n	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.00	0	20	0	20	n	0.00	0	19	0	19	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.12	2	14	2	14	y	0.00	0	18	0	18	n	0.00	0	20	0	20	n	ENSMUSG00000032228.17	Tcf12	chr9	protein_coding	transcription factor 12
known_NIR_20358	chr9	71907800	72016958	-	71907800;71922993	71922920;72016958	ES	ENSMUST00000183404.8	known	0.38	4	6.5	4	5;8	y	0.19	2	8.5	2	9;8	y	0.06	2	32.5	2	35;30	y	0.12	2	14.0	2	13;15	y	0.16	3	15.5	3	18;13	y	0.00	0	17.0	0	14;20	n	0.00	0	15.5	0	12;19	n	0.07	1	12.5	1	13;12	n	0.00	0	17.5	0	19;16	n	0.07	1	13.5	1	13;14	n	0.00	0	20.0	0	22;18	n	0.00	0	18.0	0	16;20	n	ENSMUSG00000032228.17	Tcf12	chr9	protein_coding	transcription factor 12
known_NIR_20359	chr9	71907800	72016958	-	71922993	72016958	A3SS&ES	ENSMUST00000183492.8	known	0.33	4	8	4	8	y	0.20	2	8	2	8	y	0.06	2	30	2	30	y	0.12	2	15	2	15	y	0.19	3	13	3	13	y	0.00	0	20	0	20	n	0.00	0	19	0	19	n	0.08	1	12	1	12	n	0.00	0	16	0	16	n	0.07	1	14	1	14	n	0.00	0	18	0	18	n	0.00	0	20	0	20	n	ENSMUSG00000032228.17	Tcf12	chr9	protein_coding	transcription factor 12
known_NIR_20360	chr9	71907800;71914044	71913983;71922920	-	71907800	71922920	cassetteExon	ENSMUST00000183404.8	known	0.33	2.5	5	2;3	5	y	0.14	1.5	9	1;2	9	n	0.14	5.5	35	4;7	35	y	0.10	1.5	13	0;3	13	n	0.23	5.5	18	5;6	18	y	0.10	1.5	14	1;2	14	n	0.23	3.5	12	3;4	12	y	0.21	3.5	13	4;3	13	y	0.17	4.0	19	3;5	19	y	0.19	3.0	13	4;2	13	y	0.20	5.5	22	7;4	22	y	0.30	7.0	16	7;7	16	y	ENSMUSG00000032228.17	Tcf12	chr9	protein_coding	transcription factor 12
known_NIR_20361	chr9	7203555	7206720	+	7203555	7205298	3pMXE	ENSMUST00000216770.2	known	0.00	0	126	0	126	n	0.01	1	132	1	132	n	0.02	4	194	4	194	y	0.00	0	130	0	130	n	0.01	2	174	2	174	y	0.00	0	64	0	64	n	0.02	3	187	3	187	y	0.01	1	82	1	82	n	0.02	2	123	2	123	y	0.05	7	137	7	137	y	0.01	2	158	2	158	y	0.01	1	168	1	168	n	ENSMUSG00000032002.11	Dcun1d5	chr9	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)
known_NIR_20362	chr9	7203555	7206720	+	7203555;7205400	7205298;7206720	ES	ENSMUST00000215683.2	known	0.00	0	114.0	0	126;102	n	0.01	1	129.5	1	132;127	n	0.02	4	164.5	4	194;135	y	0.00	0	110.5	0	130;91	n	0.01	2	159.5	2	174;145	y	0.00	0	68.0	0	64;72	n	0.02	3	156.0	3	187;125	y	0.02	1	63.0	1	82;44	n	0.02	2	101.0	2	123;79	y	0.05	7	127.5	7	137;118	y	0.01	2	141.0	2	158;124	y	0.01	1	152.0	1	168;136	n	ENSMUSG00000032002.11	Dcun1d5	chr9	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)
known_NIR_20363	chr9	7205400	7206073	+	7205400	7206720	A3SS	ENSMUST00000215683.2	known	0.15	18	102	18	102	y	0.14	20	127	20	127	y	0.19	31	135	31	135	y	0.16	17	91	17	91	y	0.09	15	145	15	145	y	0.08	6	72	6	72	y	0.14	21	125	21	125	y	0.12	6	44	6	44	y	0.20	20	79	20	79	y	0.16	23	118	23	118	y	0.13	19	124	19	124	y	0.12	19	136	19	136	y	ENSMUSG00000032002.11	Dcun1d5	chr9	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)
known_NIR_20364	chr9	72220042;72226123	72226006;72226374	+	72220042	72226374	cassetteExon	ENSMUST00000184036.8	known	0.18	1.5	7	3;0	7	n	0.18	1.5	7	0;3	7	n	0.03	0.5	17	1;0	17	n	0.20	2.5	10	1;4	10	n	0.15	2.0	11	2;2	11	y	-	-	-	-	-	-	0.04	0.5	11	0;1	11	n	0.29	2.0	5	1;3	5	n	0.00	0.0	6	0;0	6	n	0.00	0.0	6	0;0	6	n	0.06	0.5	8	1;0	8	n	0.07	1.0	13	2;0	13	n	ENSMUSG00000038535.18	Zfp280d	chr9	protein_coding	zinc finger protein 280D
known_NIR_20365	chr9	72246330	72246898	+	72246330	72258807	A3SS	ENSMUST00000184036.8	known	0.20	2	8	2	8	y	0.22	2	7	2	7	n	0.31	5	11	5	11	y	0.25	2	6	2	6	n	0.38	5	8	5	8	y	0.67	2	1	2	1	n	0.38	5	8	5	8	y	0.25	2	6	2	6	n	0.21	3	11	3	11	y	0.12	1	7	1	7	n	0.15	2	11	2	11	y	0.50	6	6	6	6	y	ENSMUSG00000038535.18	Zfp280d	chr9	protein_coding	zinc finger protein 280D
known_NIR_20366	chr9	72246330	72267568	+	72246330	72246898	3pMXE	ENSMUST00000184517.8	known	0.50	2	2	2	2	n	0.71	5	2	5	2	n	0.55	6	5	6	5	y	0.00	0	2	0	2	n	0.38	3	5	3	5	n	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.50	2	2	2	2	n	0.50	3	3	3	3	n	0.83	5	1	5	1	n	0.00	0	2	0	2	n	0.25	2	6	2	6	n	ENSMUSG00000038535.18	Zfp280d	chr9	protein_coding	zinc finger protein 280D
known_NIR_20367	chr9	72246330	72267568	+	72246330	72258807	A3SS&ES	ENSMUST00000184019.8	known	0.20	2	8	2	8	y	0.42	5	7	5	7	y	0.35	6	11	6	11	y	0.00	0	6	0	6	n	0.27	3	8	3	8	y	0.50	1	1	1	1	n	0.00	0	8	0	8	n	0.25	2	6	2	6	n	0.21	3	11	3	11	y	0.42	5	7	5	7	y	0.00	0	11	0	11	n	0.25	2	6	2	6	n	ENSMUSG00000038535.18	Zfp280d	chr9	protein_coding	zinc finger protein 280D
known_NIR_20368	chr9	72246330	72267568	+	72246330;72258852	72258807;72267568	ES	ENSMUST00000184036.8	known	0.20	2	8.0	2	8;8	y	0.40	5	7.5	5	7;8	y	0.32	6	13.0	6	11;15	y	0.00	0	5.5	0	6;5	n	0.23	3	10.0	3	8;12	y	0.33	1	2.0	1	1;3	n	0.00	0	10.5	0	8;13	n	0.27	2	5.5	2	6;5	y	0.26	3	8.5	3	11;6	y	0.42	5	7.0	5	7;7	y	0.00	0	14.5	0	11;18	n	0.17	2	10.0	2	6;14	y	ENSMUSG00000038535.18	Zfp280d	chr9	protein_coding	zinc finger protein 280D
known_NIR_20369	chr9	72646810	72647450	+	72646810	72649935	A3SS	ENSMUST00000184020.8	known	1.00	202	0	202	0	n	1.00	174	0	174	0	n	1.00	933	0	933	0	n	1.00	309	1	309	1	n	1.00	385	0	385	0	n	1.00	426	0	426	0	n	1.00	357	0	357	0	n	1.00	365	0	365	0	n	1.00	225	0	225	0	n	0.99	321	2	321	2	y	1.00	197	0	197	0	n	1.00	352	0	352	0	n	ENSMUSG00000032216.16	Nedd4	chr9	protein_coding	neural precursor cell expressed, developmentally down-regulated 4
known_NIR_20370	chr9	72648969	72649935	+	72646810	72649935	A5SS	ENSMUST00000184020.8	known	1.00	160	0	160	0	n	1.00	159	0	159	0	n	1.00	732	0	732	0	n	1.00	258	1	258	1	n	1.00	320	0	320	0	n	1.00	407	0	407	0	n	1.00	277	0	277	0	n	1.00	300	0	300	0	n	1.00	176	0	176	0	n	0.99	302	2	302	2	y	1.00	208	0	208	0	n	1.00	328	0	328	0	n	ENSMUSG00000032216.16	Nedd4	chr9	protein_coding	neural precursor cell expressed, developmentally down-regulated 4
known_NIR_20371	chr9	72892955;72899888	72899776;72904684	+	72892955	72904684	cassetteExon	ENSMUST00000037977.15	known	0.02	1.0	52	0;2	52	n	0.00	0.0	29	0;0	29	n	0.00	0.0	73	0;0	73	n	0.00	0.0	80	0;0	80	n	0.01	1.0	126	1;1	126	n	0.00	0.0	51	0;0	51	n	0.02	1.5	89	2;1	89	n	0.00	0.0	77	0;0	77	n	0.00	0.0	39	0;0	39	n	0.00	0.0	98	0;0	98	n	0.01	0.5	38	0;1	38	n	0.04	3.0	71	4;2	71	y	ENSMUSG00000034563.17	Ccpg1	chr9	protein_coding	cell cycle progression 1
known_NIR_20372	chr9	72909157	72912937	+	72909157	72912923	A3SS	ENSMUST00000149692.2	known	0.02	2	87	2	87	y	0.02	2	92	2	92	y	0.01	1	125	1	125	n	0.00	0	106	0	106	n	0.00	0	143	0	143	n	0.00	0	87	0	87	n	0.01	2	134	2	134	y	0.00	0	110	0	110	n	0.01	1	93	1	93	n	0.01	2	148	2	148	y	0.00	0	107	0	107	n	0.02	2	103	2	103	y	ENSMUSG00000089865.3	Gm44503	chr9	protein_coding	predicted readthrough transcript (NMD candidate), 44503
known_NIR_20373	chr9	72920274	72922614	+	72920608	72922614	A5SS	ENSMUST00000149692.2	known	0.29	30	75	30	75	y	0.39	43	67	43	67	y	0.27	22	60	22	60	y	0.37	35	59	35	59	y	0.34	45	88	45	88	y	0.32	22	46	22	46	y	0.27	43	115	43	115	y	0.32	23	50	23	50	y	0.26	25	70	25	70	y	0.28	36	92	36	92	y	0.30	38	87	38	87	y	0.29	30	74	30	74	y	ENSMUSG00000089865.3	Gm44503	chr9	protein_coding	predicted readthrough transcript (NMD candidate), 44503
known_NIR_20374	chr9	72922332	72923431	-	72922473	72923431	A3SS	ENSMUST00000184035.8	known	0.67	2	1	2	1	n	0.89	8	1	8	1	n	1.00	6	0	6	0	n	0.00	0	1	0	1	n	0.60	6	4	6	4	y	1.00	8	0	8	0	n	1.00	3	0	3	0	n	1.00	6	0	6	0	n	1.00	2	0	2	0	n	0.80	8	2	8	2	y	0.67	4	2	4	2	n	0.75	6	2	6	2	n	ENSMUSG00000079469.11	Pigb	chr9	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class B
known_NIR_20375	chr9	74756493	74758082	+	74756493	74758043	A3SS	ENSMUST00000160979.9	known	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.12	1	7	1	7	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.12	1	7	1	7	n	0.00	0	3	0	3	n	0.08	1	12	1	12	n	0.33	4	8	4	8	y	0.00	0	6	0	6	n	0.00	0	7	0	7	n	ENSMUSG00000066477.14	Gm16551	chr9	lncRNA	predicted gene 16551
known_NIR_20376	chr9	74756493	74758082	+	74756493	74767164	A3SS	ENSMUST00000161862.8	known	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.14	1	6	1	6	n	0.00	0	1	0	1	n	0.14	1	6	1	6	n	0.40	4	6	4	6	y	0.00	0	7	0	7	n	0.00	0	3	0	3	n	ENSMUSG00000066477.14	Gm16551	chr9	lncRNA	predicted gene 16551
known_NIR_20377	chr9	74756493	74767164	+	74756493	74758043	3pMXE	ENSMUST00000160979.9	known	0.25	2	6	2	6	n	0.57	4	3	4	3	n	0.30	3	7	3	7	y	0.50	8	8	8	8	y	0.40	4	6	4	6	y	0.50	1	1	1	1	n	0.46	6	7	6	7	y	0.25	1	3	1	3	n	0.33	6	12	6	12	y	0.43	6	8	6	8	y	0.54	7	6	7	6	y	0.30	3	7	3	7	y	ENSMUSG00000066477.14	Gm16551	chr9	lncRNA	predicted gene 16551
known_NIR_20378	chr9	74773921	74796588	+	74770683	74796588	A5SS	ENSMUST00000056006.11	known	0.20	3	12	3	12	y	0.00	0	7	0	7	n	0.30	13	31	13	31	y	0.18	2	9	2	9	y	0.24	12	39	12	39	y	0.00	0	10	0	10	n	0.16	5	27	5	27	y	0.15	4	22	4	22	y	0.00	0	5	0	5	n	0.28	5	13	5	13	y	0.27	4	11	4	11	y	0.19	17	72	17	72	y	ENSMUSG00000043013.11	Onecut1	chr9	protein_coding	one cut domain, family member 1
known_NIR_20379	chr9	74860341	74860996	+	74860290	74860996	A5SS	ENSMUST00000216809.2	known	0.34	13	25	13	25	y	0.46	13	15	13	15	y	0.46	6	7	6	7	y	0.60	24	16	24	16	y	0.62	18	11	18	11	y	0.55	6	5	6	5	y	0.66	19	10	19	10	y	0.60	6	4	6	4	y	0.78	25	7	25	7	y	0.63	19	11	19	11	y	0.59	17	12	17	12	y	0.68	17	8	17	8	y	ENSMUSG00000034858.17	Fam214a	chr9	protein_coding	family with sequence similarity 214, member A
known_NIR_20380	chr9	74860560	74860996	+	74860290	74860996	A5SS	ENSMUST00000216809.2	known	0.47	22	25	22	25	y	0.50	15	15	15	15	y	0.75	21	7	21	7	y	0.64	29	16	29	16	y	0.75	33	11	33	11	y	0.71	12	5	12	5	y	0.70	23	10	23	10	y	0.78	14	4	14	4	y	0.75	21	7	21	7	y	0.78	40	11	40	11	y	0.56	15	12	15	12	y	0.80	32	8	32	8	y	ENSMUSG00000034858.17	Fam214a	chr9	protein_coding	family with sequence similarity 214, member A
known_NIR_20381	chr9	74860560	74860996	+	74860341	74860996	A5SS	ENSMUST00000215370.2	known	0.63	22	13	22	13	y	0.54	15	13	15	13	y	0.78	21	6	21	6	y	0.55	29	24	29	24	y	0.65	33	18	33	18	y	0.67	12	6	12	6	y	0.55	23	19	23	19	y	0.70	14	6	14	6	y	0.46	21	25	21	25	y	0.68	40	19	40	19	y	0.47	15	17	15	17	y	0.65	32	17	32	17	y	ENSMUSG00000034858.17	Fam214a	chr9	protein_coding	family with sequence similarity 214, member A
known_NIR_20382	chr9	74861112	74911547	+	74861112	74861191	3pMXE	ENSMUST00000216809.2	known	0.65	51	27	51	27	y	0.61	43	27	43	27	y	0.72	34	13	34	13	y	0.72	89	34	89	34	y	0.54	58	49	58	49	y	0.62	16	10	16	10	y	0.70	60	26	60	26	y	0.76	32	10	32	10	y	0.67	55	27	55	27	y	0.69	67	30	67	30	y	0.77	76	23	76	23	y	0.53	36	32	36	32	y	ENSMUSG00000034858.17	Fam214a	chr9	protein_coding	family with sequence similarity 214, member A
known_NIR_20383	chr9	74931028	74932933	+	74930935	74932933	A5SS	ENSMUST00000215370.2	known	0.05	5	106	5	106	y	0.09	9	90	9	90	y	0.02	1	49	1	49	n	0.10	10	90	10	90	y	0.01	1	87	1	87	n	0.00	0	16	0	16	n	0.08	10	120	10	120	y	0.00	0	43	0	43	n	0.08	8	97	8	97	y	0.12	17	119	17	119	y	0.06	7	108	7	108	y	0.24	18	58	18	58	y	ENSMUSG00000034858.17	Fam214a	chr9	protein_coding	family with sequence similarity 214, member A
known_NIR_20384	chr9	74945005	74945189	+	74945001	74945189	A5SS	ENSMUST00000168166.8	known	0.08	9	104	9	104	y	0.08	9	103	9	103	y	0.07	12	152	12	152	y	0.05	5	99	5	99	y	0.06	10	145	10	145	y	0.06	4	64	4	64	y	0.10	14	130	14	130	y	0.08	6	66	6	66	y	0.00	0	112	0	112	n	0.09	11	115	11	115	y	0.08	11	124	11	124	y	0.08	11	120	11	120	y	ENSMUSG00000007656.14	Arpp19	chr9	protein_coding	cAMP-regulated phosphoprotein 19
known_NIR_20385	chr9	74945243	74950495	+	74945243	74963917	A3SS	ENSMUST00000169188.2	known	0.33	2	4	2	4	n	0.20	2	8	2	8	y	0.25	2	6	2	6	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.12	1	7	1	7	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	ENSMUSG00000007656.14	Arpp19	chr9	protein_coding	cAMP-regulated phosphoprotein 19
known_NIR_20386	chr9	74945243	74963917	+	74945243;74959637	74959515;74963917	ES	ENSMUST00000168166.8	known	0.01	4	407.5	4	372;443	y	0.02	8	401.0	8	362;440	y	0.01	6	472.0	6	472;472	y	0.01	2	347.5	2	345;350	y	0.01	5	466.5	5	450;483	y	0.03	8	248.5	8	218;279	y	0.01	7	497.5	7	495;500	y	0.00	0	234.0	0	235;233	n	0.01	2	354.0	2	362;346	y	0.01	7	502.0	7	493;511	y	0.01	3	465.0	3	426;504	y	0.02	12	475.5	12	413;538	y	ENSMUSG00000007656.14	Arpp19	chr9	protein_coding	cAMP-regulated phosphoprotein 19
known_NIR_20387	chr9	74945243	74963917	+	74959637	74963917	A5SS&ES	ENSMUST00000168301.2	known	0.01	4	443	4	443	y	0.02	8	440	8	440	y	0.01	6	472	6	472	y	0.01	2	350	2	350	y	0.01	5	483	5	483	y	0.03	8	279	8	279	y	0.01	7	500	7	500	y	0.00	0	233	0	233	n	0.01	2	346	2	346	y	0.01	7	511	7	511	y	0.01	3	504	3	504	y	0.02	12	538	12	538	y	ENSMUSG00000007656.14	Arpp19	chr9	protein_coding	cAMP-regulated phosphoprotein 19
known_NIR_20388	chr9	74945243;74950580	74950495;74959515	+	74945243	74959515	cassetteExon	ENSMUST00000168166.8	known	0.01	2.0	372	2;2	372	y	0.01	2.0	362	2;2	362	y	0.00	1.5	472	2;1	472	n	0.00	0.0	345	0;0	345	n	0.01	3.0	450	0;6	450	n	0.00	0.0	218	0;0	218	n	0.00	1.5	495	1;2	495	n	0.01	1.5	235	1;2	235	n	0.00	1.0	362	0;2	362	n	0.00	1.5	493	0;3	493	n	0.00	1.0	426	0;2	426	n	0.01	4.5	413	0;9	413	n	ENSMUSG00000007656.14	Arpp19	chr9	protein_coding	cAMP-regulated phosphoprotein 19
known_NIR_20389	chr9	75306033	75317137	-	75306033	75317145	A5SS	ENSMUST00000049355.11	known	0.11	2	17	2	17	y	0.00	0	8	0	8	n	0.02	1	63	1	63	n	0.10	2	19	2	19	y	0.00	0	19	0	19	n	0.04	1	23	1	23	n	0.04	1	22	1	22	n	0.05	1	20	1	20	n	0.13	2	13	2	13	y	0.05	1	18	1	18	n	0.12	2	14	2	14	y	0.14	4	24	4	24	y	ENSMUSG00000042688.17	Mapk6	chr9	protein_coding	mitogen-activated protein kinase 6
known_NIR_20390	chr9	75306033	75317145	-	75306033	75316484	5pMXE	ENSMUST00000168937.8	known	0.85	17	3	17	3	y	0.67	8	4	8	4	y	0.76	63	20	63	20	y	0.79	19	5	19	5	y	0.68	19	9	19	9	y	0.85	23	4	23	4	y	1.00	22	0	22	0	n	0.83	20	4	20	4	y	0.87	13	2	13	2	y	0.75	18	6	18	6	y	1.00	14	0	14	0	n	0.92	24	2	24	2	y	ENSMUSG00000042688.17	Mapk6	chr9	protein_coding	mitogen-activated protein kinase 6
known_NIR_20391	chr9	77009675;77045838	77045632;77072047	-	77009675	77072047	cassetteExon	ENSMUST00000185144.8	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	4.0	4	3;5	4	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032355.17	Mlip	chr9	protein_coding	muscular LMNA-interacting protein
known_NIR_20392	chr9	77673581	77682361	+	77662241	77682361	A5SS	ENSMUST00000034905.9	known	0.00	0	109	0	109	n	0.01	1	71	1	71	n	0.00	0	231	0	231	n	0.00	0	209	0	209	n	0.00	0	219	0	219	n	0.00	0	92	0	92	n	0.00	0	151	0	151	n	0.00	0	111	0	111	n	0.00	0	151	0	151	n	0.02	6	328	6	328	y	0.00	0	171	0	171	n	0.00	0	307	0	307	n	ENSMUSG00000032350.10	Gclc	chr9	protein_coding	glutamate-cysteine ligase, catalytic subunit
known_NIR_20393	chr9	77673587	77682361	+	77662241	77682361	A5SS	ENSMUST00000034905.9	known	0.00	0	109	0	109	n	0.00	0	71	0	71	n	0.00	0	231	0	231	n	0.00	0	209	0	209	n	0.00	0	219	0	219	n	0.00	0	92	0	92	n	0.00	0	151	0	151	n	0.00	0	111	0	111	n	0.00	0	151	0	151	n	0.01	3	328	3	328	y	0.00	0	171	0	171	n	0.00	0	307	0	307	n	ENSMUSG00000032350.10	Gclc	chr9	protein_coding	glutamate-cysteine ligase, catalytic subunit
known_NIR_20394	chr9	7768341;7785327	7785212;7790843	+	7768341	7790843	cassetteExon	ENSMUST00000052865.16	known	0.00	0.0	35	0;0	35	n	0.00	0.0	35	0;0	35	n	0.01	0.5	54	1;0	54	n	0.05	2.5	50	3;2	50	y	0.03	2.0	61	2;2	61	y	0.04	1.5	39	3;0	39	n	0.07	3.5	47	4;3	47	y	0.03	1.5	46	2;1	46	n	0.03	1.0	29	1;1	29	n	0.02	1.0	56	2;0	56	n	0.01	0.5	35	1;0	35	n	0.06	3.5	52	4;3	52	y	ENSMUSG00000050912.16	Tmem123	chr9	protein_coding	transmembrane protein 123
known_NIR_20395	chr9	7768341;7785327	7785212;7790843	+	7768341;7789386	7789301;7790843	MXE	ENSMUST00000136904.8	known	0.00	0.0	2.0	0;0	2;2	n	0.00	0.0	0.5	0;0	1;0	n	0.20	0.5	2.0	1;0	1;3	n	0.56	2.5	2.0	3;2	2;2	n	0.44	2.0	2.5	2;2	1;4	n	0.50	1.5	1.5	3;0	1;2	n	0.47	3.5	4.0	4;3	2;6	y	0.60	1.5	1.0	2;1	0;2	n	0.33	1.0	2.0	1;1	2;2	n	0.25	1.0	3.0	2;0	1;5	n	1.00	0.5	0.0	1;0	0;0	n	0.78	3.5	1.0	4;3	1;1	n	ENSMUSG00000050912.16	Tmem123	chr9	protein_coding	transmembrane protein 123
known_NIR_20396	chr9	7768341;7789386	7789301;7790843	+	7768341	7790843	cassetteExon	ENSMUST00000052865.16	known	0.05	2.0	35	2;2	35	y	0.01	0.5	35	1;0	35	n	0.04	2.0	54	1;3	54	n	0.04	2.0	50	2;2	50	y	0.04	2.5	61	1;4	61	n	0.04	1.5	39	1;2	39	n	0.08	4.0	47	2;6	47	y	0.02	1.0	46	0;2	46	n	0.06	2.0	29	2;2	29	y	0.05	3.0	56	1;5	56	n	0.00	0.0	35	0;0	35	n	0.02	1.0	52	1;1	52	n	ENSMUSG00000050912.16	Tmem123	chr9	protein_coding	transmembrane protein 123
known_NIR_20397	chr9	77829303	77864423	+	77824808	77864423	A5SS	ENSMUST00000034904.14	known	0.01	1	165	1	165	n	0.03	3	108	3	108	y	0.01	3	197	3	197	y	0.01	2	278	2	278	y	0.01	2	203	2	203	y	0.03	3	90	3	90	y	0.01	3	219	3	219	y	0.03	3	102	3	102	y	0.01	1	177	1	177	n	0.00	0	312	0	312	n	0.00	0	158	0	158	n	0.00	0	306	0	306	n	ENSMUSG00000032349.14	Elovl5	chr9	protein_coding	ELOVL family member 5, elongation of long chain fatty acids (yeast)
known_NIR_20398	chr9	78008968	78015573	-	78008968	78011553	A5SS&ES	ENSMUST00000001402.14	known	0.01	2	158	2	158	y	0.00	0	133	0	133	n	0.01	2	135	2	135	y	0.00	0	171	0	171	n	0.02	5	231	5	231	y	0.00	0	96	0	96	n	0.01	2	211	2	211	y	0.03	4	119	4	119	y	0.02	2	131	2	131	y	0.00	0	244	0	244	n	0.00	0	146	0	146	n	0.00	0	226	0	226	n	ENSMUSG00000001366.15	Fbxo9	chr9	protein_coding	f-box protein 9
known_NIR_20399	chr9	78008968	78015573	-	78008968;78011636	78011553;78015573	ES	ENSMUST00000085311.13	known	0.01	2	143.0	2	158;128	y	0.00	0	100.0	0	133;67	n	0.02	2	111.5	2	135;88	y	0.00	0	153.0	0	171;135	n	0.02	5	203.0	5	231;175	y	0.00	0	94.0	0	96;92	n	0.01	2	175.0	2	211;139	y	0.04	4	108.0	4	119;97	y	0.02	2	106.5	2	131;82	y	0.00	0	193.0	0	244;142	n	0.00	0	121.5	0	146;97	n	0.00	0	190.5	0	226;155	n	ENSMUSG00000001366.15	Fbxo9	chr9	protein_coding	f-box protein 9
known_NIR_20400	chr9	78011636	78016284	-	78011636	78015573	5pMXE	ENSMUST00000085311.13	known	0.00	0	128	0	128	n	0.00	0	67	0	67	n	0.00	0	88	0	88	n	0.01	1	135	1	135	n	0.01	1	175	1	175	n	0.00	0	92	0	92	n	0.00	0	139	0	139	n	0.00	0	97	0	97	n	0.00	0	82	0	82	n	0.01	2	142	2	142	y	0.01	1	97	1	97	n	0.01	2	155	2	155	y	ENSMUSG00000001366.15	Fbxo9	chr9	protein_coding	f-box protein 9
known_NIR_20401	chr9	78016763	78017255	+	78016763	78038577	A3SS	ENSMUST00000118869.8	known	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.14	4	24	4	24	y	0.21	3	11	3	11	y	0.05	1	21	1	21	n	0.15	4	22	4	22	y	0.12	2	15	2	15	y	0.10	3	26	3	26	y	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.33	1	2	1	2	n	0.15	2	11	2	11	y	ENSMUSG00000009828.16	Cilk1	chr9	protein_coding	ciliogenesis associated kinase 1
known_NIR_20402	chr9	78020737	78038577	+	78016763	78038577	A5SS	ENSMUST00000118869.8	known	0.18	2	9	2	9	y	0.00	0	9	0	9	n	0.00	0	24	0	24	n	0.08	1	11	1	11	n	0.16	4	21	4	21	y	0.15	4	22	4	22	y	0.25	5	15	5	15	y	0.00	0	26	0	26	n	0.12	2	15	2	15	y	0.17	2	10	2	10	y	0.50	2	2	2	2	n	0.15	2	11	2	11	y	ENSMUSG00000009828.16	Cilk1	chr9	protein_coding	ciliogenesis associated kinase 1
known_NIR_20403	chr9	78249220	78254371	-	78249220	78249769	A5SS&ES	ENSMUST00000125479.8	known	0.17	1	5	1	5	n	0.67	6	3	6	3	n	-	-	-	-	-	-	0.22	2	7	2	7	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.50	4	4	4	4	n	-	-	-	-	-	-	0.16	3	16	3	16	y	0.32	11	23	11	23	y	0.36	10	18	10	18	y	0.38	26	43	26	43	y	ENSMUSG00000057933.11	Gsta2	chr9	protein_coding	glutathione S-transferase, alpha 2 (Yc2)
known_NIR_20404	chr9	78249220;78249879	78249769;78254371	-	78249220	78254371	cassetteExon	ENSMUST00000034902.12	known	0.71	2.5	1	5;0	1	n	0.33	3.0	6	3;3	6	y	-	-	-	-	-	-	0.64	3.5	2	7;0	2	n	0.50	1.0	1	1;1	1	n	-	-	-	-	-	-	0.33	2.0	4	4;0	4	n	-	-	-	-	-	-	0.81	12.5	3	16;9	3	y	0.57	14.5	11	23;6	11	y	0.51	10.5	10	18;3	10	y	0.59	37.0	26	43;31	26	y	ENSMUSG00000057933.11	Gsta2	chr9	protein_coding	glutathione S-transferase, alpha 2 (Yc2)
known_NIR_20405	chr9	78249879	78254371	-	78249879	78262941	A5SS	ENSMUST00000125479.8	known	-	-	-	-	-	-	1.00	3	0	3	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.69	9	4	9	4	y	0.60	6	4	6	4	y	0.50	3	3	3	3	n	0.86	31	5	31	5	y	ENSMUSG00000057933.11	Gsta2	chr9	protein_coding	glutathione S-transferase, alpha 2 (Yc2)
known_NIR_20406	chr9	7835380	7836696	-	7835380	7836991	A5SS	ENSMUST00000190341.7	known	0.86	6	1	6	1	n	1.00	5	0	5	0	n	0.64	7	4	7	4	y	0.67	6	3	6	3	n	0.67	12	6	12	6	y	0.67	6	3	6	3	n	0.86	19	3	19	3	y	0.55	6	5	6	5	y	0.50	6	6	6	6	y	0.53	8	7	8	7	y	0.58	11	8	11	8	y	0.82	9	2	9	2	y	ENSMUSG00000057367.13	Birc2	chr9	protein_coding	baculoviral IAP repeat-containing 2
known_NIR_20407	chr9	78357117	78364492	+	78357117;78360335	78360046;78364492	ES	ENSMUST00000034896.13	known	0.00	0	35.0	0	29;41	n	0.00	0	22.5	0	10;35	n	0.00	0	32.0	0	34;30	n	0.00	0	43.0	0	23;63	n	0.00	0	32.0	0	23;41	n	0.10	2	18.0	2	21;15	y	0.03	1	35.0	1	27;43	n	0.04	1	26.0	1	24;28	n	0.03	1	31.5	1	34;29	n	0.00	0	54.0	0	37;71	n	0.00	0	39.5	0	25;54	n	0.05	3	52.5	3	31;74	y	ENSMUSG00000032342.14	Mto1	chr9	protein_coding	mitochondrial tRNA translation optimization 1
known_NIR_20408	chr9	78387970	78396356	-	78387970	78388921	5pMXE	ENSMUST00000042235.15	known	0.00	6	4292	6	4292	y	0.00	2	3880	2	3880	y	0.00	0	6231	0	6231	n	0.00	5	6280	5	6280	y	0.00	3	7159	3	7159	y	0.00	5	3336	5	3336	y	0.00	1	6504	1	6504	n	0.00	4	3665	4	3665	y	0.00	6	4588	6	4588	y	0.00	4	6979	4	6979	y	0.00	0	5428	0	5428	n	0.00	2	7427	2	7427	y	ENSMUSG00000037742.15	Eef1a1	chr9	protein_coding	eukaryotic translation elongation factor 1 alpha 1
known_NIR_20409	chr9	78477226	78478304	-	78468088	78478304	A3SS	ENSMUST00000052441.12	known	0.03	1	31	1	31	n	0.00	0	18	0	18	n	0.19	9	38	9	38	y	0.08	3	33	3	33	y	0.04	2	46	2	46	y	0.10	3	26	3	26	y	0.05	2	35	2	35	y	0.12	4	30	4	30	y	0.05	1	21	1	21	n	0.01	1	73	1	73	n	0.14	4	25	4	25	y	0.05	2	38	2	38	y	ENSMUSG00000049624.15	Slc17a5	chr9	protein_coding	solute carrier family 17 (anion/sugar transporter), member 5
known_NIR_20410	chr9	78482035	78484312	-	78482019	78484312	A3SS	ENSMUST00000052441.12	known	0.00	0	37	0	37	n	0.04	1	27	1	27	n	0.05	3	57	3	57	y	0.06	3	46	3	46	y	0.05	4	70	4	70	y	0.03	1	30	1	30	n	0.05	3	62	3	62	y	0.12	5	36	5	36	y	0.03	1	30	1	30	n	0.02	1	51	1	51	n	0.00	0	32	0	32	n	0.04	2	46	2	46	y	ENSMUSG00000049624.15	Slc17a5	chr9	protein_coding	solute carrier family 17 (anion/sugar transporter), member 5
known_NIR_20411	chr9	78484467	78485793	-	78484545	78485793	A3SS	ENSMUST00000052441.12	known	0.16	3	16	3	16	y	0.00	0	27	0	27	n	0.00	0	38	0	38	n	0.00	0	53	0	53	n	0.00	0	59	0	59	n	0.00	0	31	0	31	n	0.00	0	42	0	42	n	0.00	0	37	0	37	n	0.00	0	25	0	25	n	0.00	0	59	0	59	n	0.00	0	29	0	29	n	0.00	0	30	0	30	n	ENSMUSG00000049624.15	Slc17a5	chr9	protein_coding	solute carrier family 17 (anion/sugar transporter), member 5
known_NIR_20412	chr9	7861408	7872991	-	7861408	7872824	A5SS	ENSMUST00000013949.15	known	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.21	4	15	4	15	y	0.17	1	5	1	5	n	0.00	0	18	0	18	n	0.00	0	3	0	3	n	0.11	1	8	1	8	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	ENSMUSG00000032000.18	Birc3	chr9	protein_coding	baculoviral IAP repeat-containing 3
known_NIR_20413	chr9	7938539;7950540	7950493;7952954	-	7938539	7952954	cassetteExon	ENSMUST00000086580.12	known	0.64	39.0	22	52;26	22	y	0.58	23.5	17	25;22	17	y	0.41	51.5	75	47;56	75	y	0.50	43.5	44	44;43	44	y	0.55	76.0	62	81;71	62	y	0.44	27.5	35	30;25	35	y	0.52	51.0	48	45;57	48	y	0.57	45.0	34	49;41	34	y	0.71	45.0	18	44;46	18	y	0.67	68.0	34	68;68	34	y	0.58	44.0	32	46;42	32	y	0.65	65.5	36	66;65	36	y	ENSMUSG00000053110.14	Yap1	chr9	protein_coding	yes-associated protein 1
known_NIR_20414	chr9	7953135	7962284	-	7953135	7962290	A5SS	ENSMUST00000086580.12	known	0.06	3	51	3	51	y	0.00	0	50	0	50	n	0.04	4	97	4	97	y	0.07	7	92	7	92	y	0.12	13	97	13	97	y	0.03	2	56	2	56	y	0.04	4	88	4	88	y	0.04	2	55	2	55	y	0.03	1	35	1	35	n	0.05	5	88	5	88	y	0.13	7	46	7	46	y	0.05	3	57	3	57	y	ENSMUSG00000053110.14	Yap1	chr9	protein_coding	yes-associated protein 1
known_NIR_20415	chr9	79665861	79666432	-	79665861	79666922	A5SS	ENSMUST00000034881.8	known	0.01	9	1168	9	1168	y	0.00	5	1140	5	1140	y	0.02	23	1211	23	1211	y	0.00	5	1102	5	1102	y	0.00	2	1278	2	1278	y	0.00	3	721	3	721	y	0.01	8	1471	8	1471	y	0.00	2	656	2	656	y	0.01	13	1063	13	1063	y	0.01	16	1513	16	1513	y	0.02	19	1237	19	1237	y	0.02	24	1440	24	1440	y	ENSMUSG00000032330.8	Cox7a2	chr9	protein_coding	cytochrome c oxidase subunit 7A2
known_NIR_20416	chr9	79684613	79700256	-	79684613;79687930	79687823;79700256	ES	ENSMUST00000034878.12	known	0.00	0	206.5	0	238;175	n	0.00	0	150.0	0	183;117	n	0.01	3	400.0	3	440;360	y	0.00	0	318.0	0	328;308	n	0.00	0	396.5	0	454;339	n	0.00	0	192.5	0	214;171	n	0.00	0	305.5	0	310;301	n	0.00	0	213.5	0	235;192	n	0.00	0	216.5	0	247;186	n	0.00	0	352.5	0	401;304	n	0.01	2	241.5	2	265;218	y	0.00	0	391.5	0	450;333	n	ENSMUSG00000032328.13	Tmem30a	chr9	protein_coding	transmembrane protein 30A
known_NIR_20417	chr9	79974854	79994712	+	79974854	80010976	A3SS	ENSMUST00000164859.8	known	1.00	18	0	18	0	n	1.00	4	0	4	0	n	0.96	27	1	27	1	n	1.00	17	0	17	0	n	0.97	29	1	29	1	n	0.80	12	3	12	3	y	1.00	20	0	20	0	n	1.00	15	0	15	0	n	1.00	9	0	9	0	n	1.00	18	0	18	0	n	1.00	8	0	8	0	n	1.00	21	0	21	0	n	ENSMUSG00000034252.15	Senp6	chr9	protein_coding	SUMO/sentrin specific peptidase 6
known_NIR_20418	chr9	79974854;79994805	79994712;79999549	+	79974854	79999549	cassetteExon	ENSMUST00000176640.8	known	0.81	12.5	3	18;7	3	y	0.38	2.5	4	4;1	4	n	0.60	18.0	12	27;9	12	y	0.32	8.5	18	17;0	18	n	0.55	18.5	15	29;8	15	y	0.62	10.0	6	12;8	6	y	0.64	10.5	6	20;1	6	n	0.55	8.5	7	15;2	7	y	0.44	5.5	7	9;2	7	y	0.45	10.5	13	18;3	13	y	0.42	6.5	9	8;5	9	y	0.43	12.0	16	21;3	16	y	ENSMUSG00000034252.15	Senp6	chr9	protein_coding	SUMO/sentrin specific peptidase 6
known_NIR_20419	chr9	79994805	79999549	+	79994805;79997188	79997131;79999549	ES	ENSMUST00000175673.2	known	0.20	7	27.5	7	27;28	y	0.08	1	11.0	1	11;11	n	0.20	9	37.0	9	35;39	y	0.00	0	33.5	0	31;36	n	0.17	8	39.5	8	33;46	y	0.23	8	26.5	8	25;28	y	0.03	1	29.0	1	30;28	n	0.08	2	22.0	2	22;22	y	0.11	2	17.0	2	12;22	y	0.07	3	37.5	3	40;35	y	0.23	5	17.0	5	11;23	y	0.07	3	39.0	3	37;41	y	ENSMUSG00000034252.15	Senp6	chr9	protein_coding	SUMO/sentrin specific peptidase 6
known_NIR_20420	chr9	79997188	79999549	+	79974854	79999549	A5SS	ENSMUST00000176640.8	known	0.90	28	3	28	3	y	0.73	11	4	11	4	y	0.76	39	12	39	12	y	0.67	36	18	36	18	y	0.75	46	15	46	15	y	0.82	28	6	28	6	y	0.82	28	6	28	6	y	0.76	22	7	22	7	y	0.76	22	7	22	7	y	0.73	35	13	35	13	y	0.72	23	9	23	9	y	0.72	41	16	41	16	y	ENSMUSG00000034252.15	Senp6	chr9	protein_coding	SUMO/sentrin specific peptidase 6
known_NIR_20421	chr9	80000923	80010976	+	79974854	80010976	A5SS	ENSMUST00000164859.8	known	1.00	13	0	13	0	n	1.00	8	0	8	0	n	0.96	26	1	26	1	n	1.00	13	0	13	0	n	0.95	19	1	19	1	n	0.84	16	3	16	3	y	1.00	13	0	13	0	n	1.00	20	0	20	0	n	1.00	12	0	12	0	n	1.00	24	0	24	0	n	1.00	4	0	4	0	n	1.00	19	0	19	0	n	ENSMUSG00000034252.15	Senp6	chr9	protein_coding	SUMO/sentrin specific peptidase 6
known_NIR_20422	chr9	80000923;80006188	80006168;80010976	+	80000923	80010976	cassetteExon	ENSMUST00000037484.15	known	0.60	19.5	13	19;20	13	y	0.60	12.0	8	10;14	8	y	0.58	36.5	26	37;36	26	y	0.70	30.5	13	28;33	13	y	0.67	39.0	19	42;36	19	y	0.51	16.5	16	15;18	16	y	0.72	33.0	13	35;31	13	y	0.53	23.0	20	22;24	20	y	0.68	25.5	12	24;27	12	y	0.63	40.5	24	38;43	24	y	0.82	18.0	4	20;16	4	y	0.64	34.5	19	34;35	19	y	ENSMUSG00000034252.15	Senp6	chr9	protein_coding	SUMO/sentrin specific peptidase 6
known_NIR_20423	chr9	80006188	80010976	+	79974854	80010976	A5SS	ENSMUST00000164859.8	known	1.00	20	0	20	0	n	1.00	14	0	14	0	n	0.97	36	1	36	1	n	1.00	33	0	33	0	n	0.97	36	1	36	1	n	0.86	18	3	18	3	y	1.00	31	0	31	0	n	1.00	24	0	24	0	n	1.00	27	0	27	0	n	1.00	43	0	43	0	n	1.00	16	0	16	0	n	1.00	35	0	35	0	n	ENSMUSG00000034252.15	Senp6	chr9	protein_coding	SUMO/sentrin specific peptidase 6
known_NIR_20424	chr9	80011046	80018593	+	80011046	80023814	A3SS	ENSMUST00000176360.8	known	0.90	18	2	18	2	y	1.00	22	0	22	0	n	0.97	34	1	34	1	n	0.96	22	1	22	1	n	1.00	43	0	43	0	n	1.00	25	0	25	0	n	1.00	27	0	27	0	n	1.00	22	0	22	0	n	0.96	22	1	22	1	n	1.00	41	0	41	0	n	1.00	17	0	17	0	n	0.98	56	1	56	1	n	ENSMUSG00000034252.15	Senp6	chr9	protein_coding	SUMO/sentrin specific peptidase 6
known_NIR_20425	chr9	8001708	8003452	-	8001708	8004116	A5SS	ENSMUST00000086580.12	known	0.00	0	52	0	52	n	0.00	0	37	0	37	n	0.03	3	117	3	117	y	0.01	1	76	1	76	n	0.00	0	102	0	102	n	0.00	0	70	0	70	n	0.00	0	71	0	71	n	0.00	0	86	0	86	n	0.03	1	36	1	36	n	0.00	0	82	0	82	n	0.00	0	45	0	45	n	0.00	0	60	0	60	n	ENSMUSG00000053110.14	Yap1	chr9	protein_coding	yes-associated protein 1
known_NIR_20426	chr9	8001708	8003649	-	8001708	8004116	A5SS	ENSMUST00000086580.12	known	0.00	0	52	0	52	n	0.00	0	37	0	37	n	0.00	0	117	0	117	n	0.00	0	76	0	76	n	0.00	0	102	0	102	n	0.00	0	70	0	70	n	0.03	2	71	2	71	y	0.00	0	86	0	86	n	0.00	0	36	0	36	n	0.00	0	82	0	82	n	0.00	0	45	0	45	n	0.02	1	60	1	60	n	ENSMUSG00000053110.14	Yap1	chr9	protein_coding	yes-associated protein 1
known_NIR_20427	chr9	80021396	80023814	+	80011046	80023814	A5SS	ENSMUST00000176360.8	known	0.95	36	2	36	2	y	1.00	30	0	30	0	n	0.99	69	1	69	1	n	0.98	45	1	45	1	n	1.00	81	0	81	0	n	1.00	34	0	34	0	n	1.00	48	0	48	0	n	1.00	54	0	54	0	n	0.98	46	1	46	1	n	1.00	50	0	50	0	n	1.00	43	0	43	0	n	0.98	64	1	64	1	n	ENSMUSG00000034252.15	Senp6	chr9	protein_coding	SUMO/sentrin specific peptidase 6
known_NIR_20428	chr9	80038140	80043740	+	80038140;80040263	80040171;80043740	ES	ENSMUST00000037484.15	known	0.00	0	69.0	0	65;73	n	0.01	1	83.5	1	89;78	n	0.00	0	128.0	0	114;142	n	0.00	0	77.0	0	81;73	n	0.00	0	100.0	0	97;103	n	0.00	0	50.5	0	52;49	n	0.02	2	95.5	2	103;88	y	0.00	0	57.0	0	68;46	n	0.01	1	72.0	1	81;63	n	0.00	0	111.0	0	105;117	n	0.00	0	78.5	0	82;75	n	0.00	0	98.5	0	97;100	n	ENSMUSG00000034252.15	Senp6	chr9	protein_coding	SUMO/sentrin specific peptidase 6
known_NIR_20429	chr9	80199799	80200809	+	80199799	80206428	A3SS	ENSMUST00000035889.15	known	1.00	52	0	52	0	n	0.95	19	1	19	1	n	0.88	28	4	28	4	y	0.98	55	1	55	1	n	0.92	48	4	48	4	y	0.92	24	2	24	2	y	0.98	52	1	52	1	n	0.95	21	1	21	1	n	0.96	25	1	25	1	n	0.91	50	5	50	5	y	0.95	37	2	37	2	y	1.00	49	0	49	0	n	ENSMUSG00000033577.19	Myo6	chr9	protein_coding	myosin VI
known_NIR_20430	chr9	80207948	80214242	+	80207948;80210581	80210555;80214242	ES	ENSMUST00000035889.15	known	0.96	37	1.5	37	1;2	n	1.00	38	0.0	38	0;0	n	0.92	46	4.0	46	3;5	y	1.00	52	0.0	52	0;0	n	1.00	68	0.0	68	0;0	n	1.00	35	0.0	35	0;0	n	1.00	46	0.0	46	0;0	n	1.00	37	0.0	37	0;0	n	1.00	57	0.0	57	0;0	n	1.00	47	0.0	47	0;0	n	1.00	50	0.0	50	0;0	n	0.95	42	2.0	42	3;1	n	ENSMUSG00000033577.19	Myo6	chr9	protein_coding	myosin VI
known_NIR_20431	chr9	83123229	83135676	-	83123229;83132161	83132027;83135676	ES	ENSMUST00000184605.8	known	0.07	15	185.5	15	183;188	y	0.10	25	225.0	25	214;236	y	0.08	17	185.5	17	186;185	y	0.10	22	200.0	22	173;227	y	0.04	11	266.5	11	234;299	y	0.08	7	80.0	7	82;78	y	0.11	30	244.5	30	229;260	y	0.07	9	113.5	9	109;118	y	0.09	14	137.5	14	139;136	y	0.09	25	269.0	25	255;283	y	0.09	15	156.0	15	153;159	y	0.10	28	241.0	28	227;255	y	ENSMUSG00000098747.8	Gm27216	chr9	lncRNA	predicted gene 27216
known_NIR_20432	chr9	83830968	83834577	+	83807412	83834577	A5SS	ENSMUST00000190637.7	known	0.37	50	86	50	86	y	0.40	44	67	44	67	y	0.32	57	122	57	122	y	0.31	52	116	52	116	y	0.39	74	118	74	118	y	0.37	59	100	59	100	y	0.26	57	161	57	161	y	0.26	34	95	34	95	y	0.26	40	115	40	115	y	0.22	50	182	50	182	y	0.25	40	117	40	117	y	0.21	45	173	45	173	y	ENSMUSG00000032263.15	Bckdhb	chr9	protein_coding	branched chain ketoacid dehydrogenase E1, beta polypeptide
known_NIR_20433	chr9	85208858	85209096	-	85208858	85209041	A5SS	ENSMUST00000034802.15	known	1.00	3	0	3	0	n	0.75	3	1	3	1	n	0.70	7	3	7	3	y	0.75	3	1	3	1	n	0.50	4	4	4	4	n	1.00	5	0	5	0	n	1.00	3	0	3	0	n	1.00	4	0	4	0	n	0.57	4	3	4	3	n	0.67	2	1	2	1	n	1.00	1	0	1	0	n	0.25	1	3	1	3	n	ENSMUSG00000032265.15	Tent5a	chr9	protein_coding	terminal nucleotidyltransferase 5A
known_NIR_20434	chr9	85601997	85602797	-	85602002	85602797	A3SS	ENSMUST00000039213.15	known	0.01	1	68	1	68	n	0.00	0	44	0	44	n	0.03	7	205	7	205	y	0.00	0	103	0	103	n	0.00	0	170	0	170	n	0.01	1	120	1	120	n	0.03	3	107	3	107	y	0.03	3	94	3	94	y	0.00	0	54	0	54	n	0.00	0	113	0	113	n	0.00	0	56	0	56	n	0.02	2	116	2	116	y	ENSMUSG00000035941.16	Ibtk	chr9	protein_coding	inhibitor of Bruton agammaglobulinemia tyrosine kinase
known_NIR_20435	chr9	85603399	85606100	-	85603399;85604505	85604328;85606100	ES	ENSMUST00000039213.15	known	0.08	4	47.0	4	53;41	y	0.00	0	40.0	0	48;32	n	0.00	0	144.5	0	158;131	n	0.00	0	88.5	0	103;74	n	0.04	5	137.5	5	143;132	y	0.00	0	77.5	0	86;69	n	0.00	0	75.0	0	82;68	n	0.02	2	80.5	2	106;55	y	0.06	3	47.5	3	53;42	y	0.00	0	88.5	0	92;85	n	0.00	0	45.5	0	47;44	n	0.00	0	81.5	0	89;74	n	ENSMUSG00000035941.16	Ibtk	chr9	protein_coding	inhibitor of Bruton agammaglobulinemia tyrosine kinase
known_NIR_20436	chr9	86189929	86304894	-	86189929;86254532	86254394;86304894	ES	ENSMUST00000034986.14	known	0.00	0	8.0	0	7;9	n	0.00	0	7.0	0	7;7	n	0.00	0	1.0	0	0;2	n	0.15	2	11.5	2	9;14	y	0.00	0	12.5	0	12;13	n	0.00	0	4.0	0	5;3	n	0.00	0	9.0	0	9;9	n	0.00	0	1.5	0	2;1	n	0.00	0	5.5	0	6;5	n	0.00	0	8.0	0	8;8	n	0.00	0	12.0	0	11;13	n	0.00	0	13.0	0	17;9	n	ENSMUSG00000032415.15	Ube2cbp	chr9	protein_coding	ubiquitin-conjugating enzyme E2C binding protein
known_NIR_20437	chr9	86389790	86394611	+	86389790	86394614	A3SS	ENSMUST00000190957.7	known	1.00	3	0	3	0	n	-	-	-	-	-	-	0.87	13	2	13	2	y	1.00	3	0	3	0	n	0.50	6	6	6	6	y	0.80	8	2	8	2	y	-	-	-	-	-	-	1.00	4	0	4	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	3	3	3	3	n	ENSMUSG00000034973.17	Dop1a	chr9	protein_coding	DOP1 leucine zipper like protein A
known_NIR_20438	chr9	86427446	86430854	+	86427446;86430359	86430223;86430854	ES	ENSMUST00000190957.7	known	0.00	0	20.5	0	26;15	n	0.00	0	22.0	0	22;22	n	0.00	0	47.5	0	45;50	n	0.00	0	19.5	0	17;22	n	0.05	2	36.0	2	35;37	y	0.00	0	12.0	0	14;10	n	0.06	2	32.5	2	35;30	y	0.00	0	24.5	0	27;22	n	0.04	1	25.0	1	26;24	n	0.04	1	24.0	1	29;19	n	0.12	3	22.0	3	24;20	y	0.16	6	31.5	6	26;37	y	ENSMUSG00000034973.17	Dop1a	chr9	protein_coding	DOP1 leucine zipper like protein A
known_NIR_20439	chr9	86941504	86948740	+	86941504	86948702	A3SS	ENSMUST00000168529.9	known	0.03	2	70	2	70	y	0.00	0	100	0	100	n	0.00	0	89	0	89	n	0.00	0	91	0	91	n	0.04	4	95	4	95	y	0.07	5	63	5	63	y	0.00	0	130	0	130	n	0.00	0	48	0	48	n	0.01	1	85	1	85	n	0.02	2	116	2	116	y	0.00	0	99	0	99	n	0.03	3	102	3	102	y	ENSMUSG00000032872.17	Cyb5r4	chr9	protein_coding	cytochrome b5 reductase 4
known_NIR_20440	chr9	88280424;88282802	88282776;88283973	-	88280424	88283973	cassetteExon	ENSMUST00000239462.2	known	0.04	1.5	40	2;1	40	n	0.12	2.5	19	2;3	19	y	0.00	0.0	36	0;0	36	n	0.00	0.0	41	0;0	41	n	0.04	2.0	55	2;2	55	y	0.00	0.0	24	0;0	24	n	0.09	4.0	42	3;5	42	y	0.08	2.5	27	4;1	27	n	0.10	3.0	28	3;3	28	y	0.00	0.0	70	0;0	70	n	0.00	0.0	31	0;0	31	n	0.02	1.0	44	0;2	44	n	ENSMUSG00000032422.19	Snx14	chr9	protein_coding	sorting nexin 14
known_NIR_20441	chr9	88305071	88336256	-	88305071	88320721	5pMXE	ENSMUST00000239462.2	known	0.00	0	7	0	7	n	0.17	1	5	1	5	n	0.04	1	24	1	24	n	0.00	0	19	0	19	n	0.07	3	40	3	40	y	0.06	1	15	1	15	n	0.00	0	18	0	18	n	0.05	1	21	1	21	n	0.00	0	7	0	7	n	0.00	0	18	0	18	n	0.00	0	10	0	10	n	0.03	1	37	1	37	n	ENSMUSG00000032422.19	Snx14	chr9	protein_coding	sorting nexin 14
known_NIR_20442	chr9	88336348	88338416	-	88336345	88338416	A3SS	ENSMUST00000173131.8	known	0.78	47	13	47	13	y	0.73	30	11	30	11	y	0.86	74	12	74	12	y	0.84	47	9	47	9	y	0.74	64	22	64	22	y	0.90	46	5	46	5	y	0.81	60	14	60	14	y	0.73	33	12	33	12	y	0.90	44	5	44	5	y	0.87	59	9	59	9	y	0.83	40	8	40	8	y	0.83	45	9	45	9	y	ENSMUSG00000092541.8	Gm20537	chr9	protein_coding	predicted gene 20537
known_NIR_20443	chr9	88361965	88364109	-	88361965	88362659	5pMXE	ENSMUST00000174688.8	known	0.03	1	33	1	33	n	0.11	2	17	2	17	y	0.03	3	96	3	96	y	0.05	3	58	3	58	y	0.08	5	56	5	56	y	0.00	0	48	0	48	n	0.03	2	61	2	61	y	0.06	2	32	2	32	y	0.03	1	29	1	29	n	0.05	2	35	2	35	y	0.03	1	33	1	33	n	0.02	1	46	1	46	n	ENSMUSG00000032423.13	Syncrip	chr9	protein_coding	synaptotagmin binding, cytoplasmic RNA interacting protein
known_NIR_20444	chr9	88361965	88364109	-	88361965;88362818	88362659;88364109	ES	ENSMUST00000069221.12	known	0.03	1	34.0	1	33;35	n	0.09	2	20.5	2	17;24	y	0.03	3	94.0	3	96;92	y	0.05	3	53.5	3	58;49	y	0.07	5	65.0	5	56;74	y	0.00	0	47.0	0	48;46	n	0.03	2	59.5	2	61;58	y	0.05	2	38.0	2	32;44	y	0.04	1	27.5	1	29;26	n	0.04	2	46.5	2	35;58	y	0.04	1	26.5	1	33;20	n	0.02	1	49.5	1	46;53	n	ENSMUSG00000032423.13	Syncrip	chr9	protein_coding	synaptotagmin binding, cytoplasmic RNA interacting protein
known_NIR_20445	chr9	88404028	88404537	-	88404028	88404360	A5SS	ENSMUST00000239184.2	known	0.14	2	12	2	12	y	0.00	0	6	0	6	n	0.04	1	26	1	26	n	0.00	0	4	0	4	n	0.00	0	17	0	17	n	0.20	2	8	2	8	y	0.00	0	13	0	13	n	0.00	0	16	0	16	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	ENSMUSG00000097195.11	Snhg5	chr9	lncRNA	small nucleolar RNA host gene 5
known_NIR_20446	chr9	88404028	88404537	-	88404028;88404434	88404360;88404537	ES	ENSMUST00000239357.2	known	0.11	2	16.5	2	12;21	y	0.00	0	12.5	0	6;19	n	0.03	1	28.5	1	26;31	n	0.00	0	8.5	0	4;13	n	0.00	0	17.0	0	17;17	n	0.19	2	8.5	2	8;9	y	0.00	0	17.5	0	13;22	n	0.00	0	11.0	0	16;6	n	0.00	0	6.0	0	3;9	n	0.00	0	14.0	0	9;19	n	0.00	0	15.0	0	8;22	n	0.00	0	12.5	0	9;16	n	ENSMUSG00000097195.11	Snhg5	chr9	lncRNA	small nucleolar RNA host gene 5
known_NIR_20447	chr9	88404028	88404537	-	88404434	88404537	A3SS	ENSMUST00000239227.2	known	0.09	2	21	2	21	y	0.00	0	19	0	19	n	0.03	1	31	1	31	n	0.00	0	13	0	13	n	0.00	0	17	0	17	n	0.18	2	9	2	9	y	0.00	0	22	0	22	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	19	0	19	n	0.00	0	22	0	22	n	0.00	0	16	0	16	n	ENSMUSG00000097195.11	Snhg5	chr9	lncRNA	small nucleolar RNA host gene 5
known_NIR_20448	chr9	88430561	88434715	+	88430561	88434769	A3SS	ENSMUST00000162827.8	known	0.00	0	6	0	6	n	0.22	2	7	2	7	n	0.12	1	7	1	7	n	0.33	2	4	2	4	n	0.14	2	12	2	12	y	0.17	1	5	1	5	n	0.40	4	6	4	6	y	0.22	2	7	2	7	n	0.25	6	18	6	18	y	0.27	3	8	3	8	y	0.00	0	2	0	2	n	0.38	6	10	6	10	y	ENSMUSG00000032425.16	Zfp949	chr9	protein_coding	zinc finger protein 949
known_NIR_20449	chr9	88430561	88436429	+	88430561;88434914	88434715;88436429	ES	ENSMUST00000161232.2	known	0.00	0	8.5	0	0;17	n	0.00	0	3.5	0	2;5	n	0.12	2	14.5	2	1;28	n	0.00	0	9.0	0	2;16	n	0.16	2	10.5	2	2;19	y	0.00	0	4.5	0	1;8	n	0.00	0	9.0	0	4;14	n	0.00	0	3.0	0	2;4	n	0.10	1	9.5	1	6;13	n	0.19	2	8.5	2	3;14	y	0.00	0	8.5	0	0;17	n	0.00	0	11.0	0	6;16	n	ENSMUSG00000032425.16	Zfp949	chr9	protein_coding	zinc finger protein 949
known_NIR_20450	chr9	88430561	88436429	+	88430561;88434914	88434769;88436429	ES	ENSMUST00000162827.8	known	0.00	0	11.5	0	6;17	n	0.00	0	6.0	0	7;5	n	0.10	2	17.5	2	7;28	y	0.00	0	10.0	0	4;16	n	0.11	2	15.5	2	12;19	y	0.00	0	6.5	0	5;8	n	0.00	0	10.0	0	6;14	n	0.00	0	5.5	0	7;4	n	0.06	1	15.5	1	18;13	n	0.15	2	11.0	2	8;14	y	0.00	0	9.5	0	2;17	n	0.00	0	13.0	0	10;16	n	ENSMUSG00000032425.16	Zfp949	chr9	protein_coding	zinc finger protein 949
known_NIR_20451	chr9	88430561	88436429	+	88434914	88436429	A5SS&ES	ENSMUST00000160652.8	known	0.00	0	17	0	17	n	0.00	0	5	0	5	n	0.07	2	28	2	28	y	0.00	0	16	0	16	n	0.10	2	19	2	19	y	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.00	0	4	0	4	n	0.07	1	13	1	13	n	0.12	2	14	2	14	y	0.00	0	17	0	17	n	0.00	0	16	0	16	n	ENSMUSG00000032425.16	Zfp949	chr9	protein_coding	zinc finger protein 949
known_NIR_20452	chr9	88586189	88597541	-	88571038	88597541	A3SS	ENSMUST00000113110.5	known	0.04	2	48	2	48	y	0.09	6	62	6	62	y	0.11	12	99	12	99	y	0.02	1	62	1	62	n	0.06	6	89	6	89	y	0.12	6	42	6	42	y	0.03	3	88	3	88	y	0.15	7	40	7	40	y	0.00	0	55	0	55	n	0.04	3	72	3	72	y	0.06	4	63	4	63	y	0.13	10	65	10	65	y	ENSMUSG00000079427.11	Mthfsl	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase-like
known_NIR_20453	chr9	88586189	88597541	-	88586189	88601542	A5SS	ENSMUST00000190027.2	known	1.00	2	0	2	0	n	1.00	6	0	6	0	n	0.80	12	3	12	3	y	1.00	1	0	1	0	n	0.86	6	1	6	1	n	1.00	6	0	6	0	n	1.00	3	0	3	0	n	0.78	7	2	7	2	n	-	-	-	-	-	-	1.00	3	0	3	0	n	1.00	4	0	4	0	n	1.00	10	0	10	0	n	ENSMUSG00000079427.11	Mthfsl	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase-like
known_NIR_20454	chr9	88597802	88598547	-	88597802	88601712	A5SS	ENSMUST00000113110.5	known	0.00	0	91	0	91	n	0.00	0	91	0	91	n	0.02	2	121	2	121	y	0.00	0	94	0	94	n	0.00	0	117	0	117	n	0.00	0	59	0	59	n	0.02	2	125	2	125	y	0.00	0	78	0	78	n	0.00	0	73	0	73	n	0.00	0	115	0	115	n	0.00	0	80	0	80	n	0.00	0	122	0	122	n	ENSMUSG00000079427.11	Mthfsl	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase-like
known_NIR_20455	chr9	88739636	88739867	-	88726319	88739867	A3SS	ENSMUST00000180712.8	known	1.00	6	0	6	0	n	0.50	2	2	2	2	n	0.78	7	2	7	2	n	0.80	8	2	8	2	y	0.90	9	1	9	1	n	0.67	2	1	2	1	n	1.00	7	0	7	0	n	1.00	1	0	1	0	n	1.00	6	0	6	0	n	1.00	6	0	6	0	n	1.00	4	0	4	0	n	1.00	6	0	6	0	n	ENSMUSG00000097177.9	9330159M07Rik	chr9	lncRNA	RIKEN cDNA 9330159M07 gene
known_NIR_20456	chr9	89093364	89097262	+	89092874	89097262	A5SS	ENSMUST00000127438.8	known	1.00	68	0	68	0	n	1.00	64	0	64	0	n	1.00	49	0	49	0	n	1.00	101	0	101	0	n	0.98	79	2	79	2	y	1.00	30	0	30	0	n	1.00	69	0	69	0	n	1.00	53	0	53	0	n	1.00	52	0	52	0	n	1.00	91	0	91	0	n	1.00	96	0	96	0	n	1.00	102	0	102	0	n	ENSMUSG00000066442.18	Mthfs	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase
known_NIR_20457	chr9	89093534	89097262	+	89092874	89097262	A5SS	ENSMUST00000127438.8	known	1.00	35	0	35	0	n	1.00	35	0	35	0	n	1.00	48	0	48	0	n	1.00	41	0	41	0	n	0.97	62	2	62	2	y	1.00	17	0	17	0	n	1.00	57	0	57	0	n	1.00	29	0	29	0	n	1.00	38	0	38	0	n	1.00	47	0	47	0	n	1.00	33	0	33	0	n	1.00	32	0	32	0	n	ENSMUSG00000066442.18	Mthfs	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase
known_NIR_20458	chr9	89093534	89097262	+	89093364	89097262	A5SS	ENSMUST00000118870.8	known	0.34	35	68	35	68	y	0.35	35	64	35	64	y	0.49	48	49	48	49	y	0.29	41	101	41	101	y	0.44	62	79	62	79	y	0.36	17	30	17	30	y	0.45	57	69	57	69	y	0.35	29	53	29	53	y	0.42	38	52	38	52	y	0.34	47	91	47	91	y	0.26	33	96	33	96	y	0.24	32	102	32	102	y	ENSMUSG00000066442.18	Mthfs	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase
known_NIR_20459	chr9	89095309	89097262	+	89093364	89097262	A5SS	ENSMUST00000118870.8	known	0.01	1	68	1	68	n	0.04	3	64	3	64	y	0.02	1	49	1	49	n	0.04	4	101	4	101	y	0.00	0	79	0	79	n	0.03	1	30	1	30	n	0.03	2	69	2	69	y	0.04	2	53	2	53	y	0.10	6	52	6	52	y	0.08	8	91	8	91	y	0.04	4	96	4	96	y	0.04	4	102	4	102	y	ENSMUSG00000066442.18	Mthfs	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase
known_NIR_20460	chr9	89095309	89097262	+	89093534	89097262	A5SS	ENSMUST00000118887.8	known	0.03	1	35	1	35	n	0.08	3	35	3	35	y	0.02	1	48	1	48	n	0.09	4	41	4	41	y	0.00	0	62	0	62	n	0.06	1	17	1	17	n	0.03	2	57	2	57	y	0.06	2	29	2	29	y	0.14	6	38	6	38	y	0.15	8	47	8	47	y	0.11	4	33	4	33	y	0.11	4	32	4	32	y	ENSMUSG00000066442.18	Mthfs	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase
known_NIR_20461	chr9	89095309	89097262	+	89096534	89097262	A5SS&ES	ENSMUST00000117314.8	known	1.00	1	0	1	0	n	1.00	3	0	3	0	n	0.50	1	1	1	1	n	1.00	4	0	4	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	n	1.00	2	0	2	0	n	1.00	6	0	6	0	n	0.80	8	2	8	2	y	0.80	4	1	4	1	n	1.00	4	0	4	0	n	ENSMUSG00000066442.18	Mthfs	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase
known_NIR_20462	chr9	89096534	89097262	+	89093364	89097262	A5SS	ENSMUST00000118870.8	known	0.00	0	68	0	68	n	0.00	0	64	0	64	n	0.02	1	49	1	49	n	0.00	0	101	0	101	n	0.00	0	79	0	79	n	0.00	0	30	0	30	n	0.00	0	69	0	69	n	0.00	0	53	0	53	n	0.00	0	52	0	52	n	0.02	2	91	2	91	y	0.01	1	96	1	96	n	0.00	0	102	0	102	n	ENSMUSG00000066442.18	Mthfs	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase
known_NIR_20463	chr9	89097523	89117725	+	89097523	89121895	A3SS	ENSMUST00000085256.8	known	0.00	0	45	0	45	n	0.02	1	46	1	46	n	0.00	0	36	0	36	n	0.00	0	58	0	58	n	0.00	0	85	0	85	n	0.11	2	17	2	17	y	0.00	0	76	0	76	n	0.00	0	23	0	23	n	0.02	1	60	1	60	n	0.00	0	80	0	80	n	0.00	0	66	0	66	n	0.00	0	72	0	72	n	ENSMUSG00000066442.18	Mthfs	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase
known_NIR_20464	chr9	89097523	89121895	+	89097523	89108224	3pMXE	ENSMUST00000118870.8	known	0.98	45	1	45	1	n	0.96	46	2	46	2	y	0.95	36	2	36	2	y	1.00	58	0	58	0	n	0.97	85	3	85	3	y	1.00	17	0	17	0	n	0.99	76	1	76	1	n	1.00	23	0	23	0	n	0.98	60	1	60	1	n	0.99	80	1	80	1	n	0.96	66	3	66	3	y	0.97	72	2	72	2	y	ENSMUSG00000066442.18	Mthfs	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase
known_NIR_20465	chr9	89097523	89121895	+	89097523;89108440	89108224;89121895	ES	ENSMUST00000127438.8	known	0.91	45	4.5	45	1;8	n	0.98	46	1.0	46	2;0	n	0.90	36	4.0	36	2;6	y	1.00	58	0.0	58	0;0	n	0.97	85	3.0	85	3;3	y	0.89	17	2.0	17	0;4	n	0.97	76	2.0	76	1;3	n	0.87	23	3.5	23	0;7	n	0.97	60	2.0	60	1;3	n	0.97	80	2.5	80	1;4	n	0.96	66	2.5	66	3;2	y	0.97	72	2.5	72	2;3	y	ENSMUSG00000066442.18	Mthfs	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase
known_NIR_20466	chr9	89100570	89121895	+	89097523	89121895	A5SS	ENSMUST00000085256.8	known	0.02	1	45	1	45	n	0.10	5	46	5	46	y	0.12	5	36	5	36	y	0.05	3	58	3	58	y	0.11	10	85	10	85	y	0.23	5	17	5	17	y	0.08	7	76	7	76	y	0.12	3	23	3	23	y	0.12	8	60	8	60	y	0.11	10	80	10	80	y	0.17	14	66	14	66	y	0.09	7	72	7	72	y	ENSMUSG00000066442.18	Mthfs	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase
known_NIR_20467	chr9	89100570	89121895	+	89108440	89121895	A5SS&ES	ENSMUST00000127438.8	known	0.11	1	8	1	8	n	1.00	5	0	5	0	n	0.45	5	6	5	6	y	1.00	3	0	3	0	n	0.77	10	3	10	3	y	0.56	5	4	5	4	n	0.70	7	3	7	3	y	0.30	3	7	3	7	y	0.73	8	3	8	3	y	0.71	10	4	10	4	y	0.88	14	2	14	2	y	0.70	7	3	7	3	y	ENSMUSG00000066442.18	Mthfs	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase
known_NIR_20468	chr9	89942563	89943448	+	89942563	89943555	A3SS	ENSMUST00000187437.2	known	0.33	3	6	3	6	n	0.33	1	2	1	2	n	0.60	3	2	3	2	n	0.00	0	11	0	11	n	0.67	10	5	10	5	y	0.00	0	2	0	2	n	0.08	1	12	1	12	n	0.12	1	7	1	7	n	0.32	6	13	6	13	y	0.22	2	7	2	7	n	0.25	2	6	2	6	n	0.29	5	12	5	12	y	ENSMUSG00000032359.15	Ctsh	chr9	protein_coding	cathepsin H
known_NIR_20469	chr9	89942563	89943555	+	89942563	89943572	A3SS	ENSMUST00000132718.8	known	0.01	6	968	6	968	y	0.00	2	805	2	805	y	0.00	2	740	2	740	y	0.01	11	1019	11	1019	y	0.00	5	1259	5	1259	y	0.00	2	493	2	493	y	0.01	12	1049	12	1049	y	0.01	7	616	7	616	y	0.02	13	739	13	739	y	0.01	7	1225	7	1225	y	0.01	6	803	6	803	y	0.01	12	1016	12	1016	y	ENSMUSG00000032359.15	Ctsh	chr9	protein_coding	cathepsin H
known_NIR_20470	chr9	89942563	89944770	+	89942563	89943555	3pMXE	ENSMUST00000187437.2	known	0.60	9	6	9	6	y	0.88	15	2	15	2	y	0.78	7	2	7	2	n	0.56	14	11	14	11	y	0.69	11	5	11	5	y	0.78	7	2	7	2	n	0.43	9	12	9	12	y	0.53	8	7	8	7	y	0.35	7	13	7	13	y	0.63	12	7	12	7	y	0.70	14	6	14	6	y	0.52	13	12	13	12	y	ENSMUSG00000032359.15	Ctsh	chr9	protein_coding	cathepsin H
known_NIR_20471	chr9	89942563	89944770	+	89942563;89943529	89943448;89944770	ES	ENSMUST00000143172.8	known	0.82	9	2.0	9	3;1	n	0.94	15	1.0	15	1;1	n	0.70	7	3.0	7	3;3	y	0.93	14	1.0	14	0;2	n	0.61	11	7.0	11	10;4	y	1.00	7	0.0	7	0;0	n	0.86	9	1.5	9	1;2	n	0.84	8	1.5	8	1;2	n	0.47	7	8.0	7	6;10	y	0.92	12	1.0	12	2;0	n	0.82	14	3.0	14	2;4	y	0.76	13	4.0	13	5;3	y	ENSMUSG00000032359.15	Ctsh	chr9	protein_coding	cathepsin H
known_NIR_20472	chr9	89942563	89944770	+	89942563;89943677	89943572;89944770	ES	ENSMUST00000132718.8	known	0.01	9	934.0	9	968;900	y	0.02	15	820.5	15	805;836	y	0.01	7	740.5	7	740;741	y	0.01	14	998.5	14	1019;978	y	0.01	11	1265.5	11	1259;1272	y	0.01	7	466.0	7	493;439	y	0.01	9	1083.0	9	1049;1117	y	0.01	8	610.5	8	616;605	y	0.01	7	776.0	7	739;813	y	0.01	12	1241.5	12	1225;1258	y	0.02	14	833.5	14	803;864	y	0.01	13	1036.5	13	1016;1057	y	ENSMUSG00000032359.15	Ctsh	chr9	protein_coding	cathepsin H
known_NIR_20473	chr9	89942563;89943529	89943448;89944770	+	89942563;89943677	89943572;89944770	MXE	ENSMUST00000132718.8	known	0.00	2.0	934.0	3;1	968;900	n	0.00	1.0	820.5	1;1	805;836	n	0.00	3.0	740.5	3;3	740;741	y	0.00	1.0	998.5	0;2	1019;978	n	0.01	7.0	1265.5	10;4	1259;1272	y	0.00	0.0	466.0	0;0	493;439	n	0.00	1.5	1083.0	1;2	1049;1117	n	0.00	1.5	610.5	1;2	616;605	n	0.01	8.0	776.0	6;10	739;813	y	0.00	1.0	1241.5	2;0	1225;1258	n	0.00	3.0	833.5	2;4	803;864	y	0.00	4.0	1036.5	5;3	1016;1057	y	ENSMUSG00000032359.15	Ctsh	chr9	protein_coding	cathepsin H
known_NIR_20474	chr9	89942563;89943677	89943448;89944770	+	89942563	89944770	cassetteExon	ENSMUST00000123320.8	known	0.98	451.5	9	3;900	9	y	0.97	418.5	15	1;836	15	n	0.98	372.0	7	3;741	7	y	0.97	489.0	14	0;978	14	n	0.98	641.0	11	10;1272	11	y	0.97	219.5	7	0;439	7	n	0.98	559.0	9	1;1117	9	n	0.97	303.0	8	1;605	8	n	0.98	409.5	7	6;813	7	y	0.98	630.0	12	2;1258	12	y	0.97	433.0	14	2;864	14	y	0.98	531.0	13	5;1057	13	y	ENSMUSG00000032359.15	Ctsh	chr9	protein_coding	cathepsin H
known_NIR_20475	chr9	89942563;89943677	89943555;89944770	+	89942563	89944770	cassetteExon	ENSMUST00000123320.8	known	0.98	453.0	9	6;900	9	y	0.97	419.0	15	2;836	15	y	0.98	371.5	7	2;741	7	y	0.97	494.5	14	11;978	14	y	0.98	638.5	11	5;1272	11	y	0.97	220.5	7	2;439	7	y	0.98	564.5	9	12;1117	9	y	0.97	306.0	8	7;605	8	y	0.98	413.0	7	13;813	7	y	0.98	632.5	12	7;1258	12	y	0.97	435.0	14	6;864	14	y	0.98	534.5	13	12;1057	13	y	ENSMUSG00000032359.15	Ctsh	chr9	protein_coding	cathepsin H
known_NIR_20476	chr9	89942563;89943677	89943555;89944770	+	89942563;89943529	89943448;89944770	MXE	ENSMUST00000143172.8	known	1.00	453.0	2.0	6;900	3;1	n	1.00	419.0	1.0	2;836	1;1	n	0.99	371.5	3.0	2;741	3;3	y	1.00	494.5	1.0	11;978	0;2	n	0.99	638.5	7.0	5;1272	10;4	y	1.00	220.5	0.0	2;439	0;0	n	1.00	564.5	1.5	12;1117	1;2	n	1.00	306.0	1.5	7;605	1;2	n	0.98	413.0	8.0	13;813	6;10	y	1.00	632.5	1.0	7;1258	2;0	n	0.99	435.0	3.0	6;864	2;4	y	0.99	534.5	4.0	12;1057	5;3	y	ENSMUSG00000032359.15	Ctsh	chr9	protein_coding	cathepsin H
known_NIR_20477	chr9	89944840	89946560	+	89944840	89946206	3pMXE	ENSMUST00000143172.8	known	0.00	0	799	0	799	n	0.00	2	763	2	763	y	0.00	0	646	0	646	n	0.00	2	878	2	878	y	0.00	1	1181	1	1181	n	0.00	1	429	1	429	n	0.00	3	1067	3	1067	y	0.00	0	507	0	507	n	0.00	2	735	2	735	y	0.00	3	1168	3	1168	y	0.00	0	786	0	786	n	0.00	0	952	0	952	n	ENSMUSG00000032359.15	Ctsh	chr9	protein_coding	cathepsin H
known_NIR_20478	chr9	89944840	89946560	+	89944840;89946310	89946206;89946560	ES	ENSMUST00000132718.8	known	0.00	0	801.0	0	799;803	n	0.00	2	764.5	2	763;766	y	0.00	0	667.5	0	646;689	n	0.00	2	855.0	2	878;832	y	0.00	1	1158.5	1	1181;1136	n	0.00	1	432.0	1	429;435	n	0.00	3	1057.0	3	1067;1047	y	0.00	0	534.0	0	507;561	n	0.00	2	746.5	2	735;758	y	0.00	3	1181.0	3	1168;1194	y	0.00	0	794.0	0	786;802	n	0.00	0	975.5	0	952;999	n	ENSMUSG00000032359.15	Ctsh	chr9	protein_coding	cathepsin H
known_NIR_20479	chr9	89950526;89951033	89950963;89953872	+	89950526	89953872	cassetteExon	ENSMUST00000034915.15	known	0.00	2.0	878	2;2	878	y	0.00	3.5	894	6;1	894	n	0.00	3.0	700	1;5	700	n	0.00	4.0	860	5;3	860	y	0.00	6.0	1197	5;7	1197	y	0.00	1.5	461	0;3	461	n	0.01	7.5	1264	9;6	1264	y	0.01	5.0	605	1;9	605	n	0.01	4.5	816	2;7	816	y	0.00	1.5	1347	1;2	1347	n	0.00	2.0	957	2;2	957	y	0.00	4.0	1064	3;5	1064	y	ENSMUSG00000032359.15	Ctsh	chr9	protein_coding	cathepsin H
known_NIR_20480	chr9	89979942	89984353	-	89979942;89982576	89982496;89984353	ES	ENSMUST00000085248.12	known	0.00	1	757.0	1	845;669	n	0.00	0	673.0	0	771;575	n	0.00	0	1034.5	0	1181;888	n	0.00	0	923.5	0	1057;790	n	0.00	1	1029.5	1	1160;899	n	0.00	1	523.5	1	593;454	n	0.00	3	967.0	3	1107;827	y	0.00	0	571.0	0	658;484	n	0.00	0	681.5	0	753;610	n	0.00	2	1050.0	2	1214;886	y	0.00	0	774.5	0	897;652	n	0.00	1	1010.0	1	1178;842	n	ENSMUSG00000062270.15	Morf4l1	chr9	protein_coding	mortality factor 4 like 1
known_NIR_20481	chr9	89979942	89984353	-	89982576	89984353	A3SS	ENSMUST00000190377.7	known	0.00	1	669	1	669	n	0.00	0	575	0	575	n	0.00	0	888	0	888	n	0.00	0	790	0	790	n	0.00	1	899	1	899	n	0.00	1	454	1	454	n	0.00	3	827	3	827	y	0.00	0	484	0	484	n	0.00	0	610	0	610	n	0.00	2	886	2	886	y	0.00	0	652	0	652	n	0.00	1	842	1	842	n	ENSMUSG00000062270.15	Morf4l1	chr9	protein_coding	mortality factor 4 like 1
known_NIR_20482	chr9	89984439	89985708	-	89984439	89996589	A5SS	ENSMUST00000190345.2	known	0.94	33	2	33	2	y	1.00	20	0	20	0	n	1.00	63	0	63	0	n	0.96	23	1	23	1	n	0.95	36	2	36	2	y	0.95	39	2	39	2	y	0.97	37	1	37	1	n	1.00	30	0	30	0	n	0.97	30	1	30	1	n	0.94	29	2	29	2	y	1.00	31	0	31	0	n	1.00	39	0	39	0	n	ENSMUSG00000062270.15	Morf4l1	chr9	protein_coding	mortality factor 4 like 1
known_NIR_20483	chr9	89984439	89989288	-	89984439	89996589	A5SS	ENSMUST00000190345.2	known	1.00	550	2	550	2	y	1.00	503	0	503	0	n	1.00	842	0	842	0	n	1.00	695	1	695	1	n	1.00	754	2	754	2	y	0.99	361	2	361	2	y	1.00	712	1	712	1	n	1.00	454	0	454	0	n	1.00	498	1	498	1	n	1.00	744	2	744	2	y	1.00	576	0	576	0	n	1.00	800	0	800	0	n	ENSMUSG00000062270.15	Morf4l1	chr9	protein_coding	mortality factor 4 like 1
known_NIR_20484	chr9	89984439	89989288	-	89984439;89985824	89985708;89989288	ES	ENSMUST00000085248.12	known	0.95	550	29.0	550	33;25	y	0.97	503	16.0	503	20;12	y	0.94	842	50.5	842	63;38	y	0.97	695	24.5	695	23;26	y	0.96	754	30.5	754	36;25	y	0.92	361	31.0	361	39;23	y	0.95	712	35.0	712	37;33	y	0.94	454	26.5	454	30;23	y	0.95	498	26.0	498	30;22	y	0.96	744	29.5	744	29;30	y	0.96	576	26.5	576	31;22	y	0.96	800	34.0	800	39;29	y	ENSMUSG00000062270.15	Morf4l1	chr9	protein_coding	mortality factor 4 like 1
known_NIR_20485	chr9	89984439;89985821	89985708;89989288	-	89984439	89989288	cassetteExon	ENSMUST00000169860.8	known	0.03	17.0	550	33;1	550	n	0.02	11.5	503	20;3	503	y	0.04	33.0	842	63;3	842	y	0.02	13.0	695	23;3	695	y	0.02	18.0	754	36;0	754	n	0.05	21.0	361	39;3	361	y	0.03	22.0	712	37;7	712	y	0.04	16.5	454	30;3	454	y	0.03	15.0	498	30;0	498	n	0.02	16.0	744	29;3	744	y	0.03	15.5	576	31;0	576	n	0.02	19.5	800	39;0	800	n	ENSMUSG00000062270.15	Morf4l1	chr9	protein_coding	mortality factor 4 like 1
known_NIR_20486	chr9	89985821	89989288	-	89985824	89989288	A3SS	ENSMUST00000085248.12	known	0.04	1	25	1	25	n	0.20	3	12	3	12	y	0.07	3	38	3	38	y	0.10	3	26	3	26	y	0.00	0	25	0	25	n	0.12	3	23	3	23	y	0.17	7	33	7	33	y	0.12	3	23	3	23	y	0.00	0	22	0	22	n	0.09	3	30	3	30	y	0.00	0	22	0	22	n	0.00	0	29	0	29	n	ENSMUSG00000062270.15	Morf4l1	chr9	protein_coding	mortality factor 4 like 1
known_NIR_20487	chr9	89992225	89996267	-	89992225	89996589	A5SS	ENSMUST00000085248.12	known	0.01	4	284	4	284	y	0.00	1	221	1	221	n	0.01	5	456	5	456	y	0.00	1	408	1	408	n	0.01	2	389	2	389	y	0.00	0	196	0	196	n	0.01	4	410	4	410	y	0.00	1	260	1	260	n	0.02	5	276	5	276	y	0.01	3	384	3	384	y	0.01	3	303	3	303	y	0.01	3	363	3	363	y	ENSMUSG00000062270.15	Morf4l1	chr9	protein_coding	mortality factor 4 like 1
known_NIR_20488	chr9	89992225	89996589	-	89984439	89996589	A3SS	ENSMUST00000190345.2	known	0.99	284	2	284	2	y	1.00	221	0	221	0	n	1.00	456	0	456	0	n	1.00	408	1	408	1	n	0.99	389	2	389	2	y	0.99	196	2	196	2	y	1.00	410	1	410	1	n	1.00	260	0	260	0	n	1.00	276	1	276	1	n	0.99	384	2	384	2	y	1.00	303	0	303	0	n	1.00	363	0	363	0	n	ENSMUSG00000062270.15	Morf4l1	chr9	protein_coding	mortality factor 4 like 1
known_NIR_20489	chr9	90074647	90075078	+	90074647	90074952	A3SS	ENSMUST00000113059.8	known	0.33	1	2	1	2	n	0.67	2	1	2	1	n	1.00	2	0	2	0	n	0.83	5	1	5	1	n	0.00	0	4	0	4	n	1.00	2	0	2	0	n	0.60	3	2	3	2	n	0.33	1	2	1	2	n	0.60	3	2	3	2	n	0.64	7	4	7	4	y	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000032363.16	Adamts7	chr9	protein_coding	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7
known_NIR_20490	chr9	9059160;9075011	9074910;9115691	-	9059160	9115691	cassetteExon	ENSMUST00000093893.12	known	0.97	31.0	1	29;33	1	n	1.00	16.0	0	17;15	0	n	1.00	32.0	0	31;33	0	n	1.00	48.0	0	50;46	0	n	0.97	62.0	2	45;79	2	y	1.00	22.5	0	23;22	0	n	1.00	39.5	0	38;41	0	n	0.96	27.0	1	29;25	1	n	0.98	43.5	1	37;50	1	n	0.96	50.0	2	51;49	2	y	1.00	46.5	0	48;45	0	n	1.00	61.0	0	64;58	0	n	ENSMUSG00000050730.18	Arhgap42	chr9	protein_coding	Rho GTPase activating protein 42
known_NIR_20491	chr9	9148255	9155304	-	9115762	9155304	A3SS	ENSMUST00000093893.12	known	0.09	3	29	3	29	y	0.33	8	16	8	16	y	0.26	6	17	6	17	y	0.09	4	42	4	42	y	0.02	2	81	2	81	y	0.15	4	22	4	22	y	0.15	7	41	7	41	y	0.19	7	30	7	30	y	0.08	4	44	4	44	y	0.05	3	58	3	58	y	0.12	5	37	5	37	y	0.09	7	71	7	71	y	ENSMUSG00000050730.18	Arhgap42	chr9	protein_coding	Rho GTPase activating protein 42
known_NIR_20492	chr9	92132477	92140101	+	92132413	92140101	A5SS	ENSMUST00000093801.10	known	0.00	0	24	0	24	n	0.07	2	27	2	27	y	0.00	0	162	0	162	n	0.00	0	45	0	45	n	0.00	0	36	0	36	n	0.00	0	65	0	65	n	0.00	0	39	0	39	n	0.00	0	56	0	56	n	0.00	0	29	0	29	n	0.00	0	41	0	41	n	0.04	1	24	1	24	n	0.05	1	18	1	18	n	ENSMUSG00000032369.14	Plscr1	chr9	protein_coding	phospholipid scramblase 1
known_NIR_20493	chr9	92158066	92163294	+	92158066	92164165	A3SS	ENSMUST00000034932.14	known	0.00	0	55	0	55	n	0.07	2	27	2	27	y	0.00	0	11	0	11	n	0.08	7	76	7	76	y	0.04	3	73	3	73	y	0.00	0	7	0	7	n	0.11	7	54	7	54	y	0.19	4	17	4	17	y	0.17	7	35	7	35	y	0.17	15	71	15	71	y	0.08	4	47	4	47	y	0.05	2	40	2	40	y	ENSMUSG00000032372.15	Plscr2	chr9	protein_coding	phospholipid scramblase 2
known_NIR_20494	chr9	92158066	92164165	+	92158066;92163836	92163294;92164165	ES	ENSMUST00000126911.2	known	1.00	55	0.0	55	0;0	n	0.87	27	4.0	27	2;6	y	1.00	11	0.0	11	0;0	n	0.94	76	5.0	76	7;3	y	0.92	73	6.0	73	3;9	y	1.00	7	0.0	7	0;0	n	0.88	54	7.5	54	7;8	y	0.81	17	4.0	17	4;4	y	0.86	35	5.5	35	7;4	y	0.85	71	13.0	71	15;11	y	0.93	47	3.5	47	4;3	y	0.98	40	1.0	40	2;0	n	ENSMUSG00000032372.15	Plscr2	chr9	protein_coding	phospholipid scramblase 2
known_NIR_20495	chr9	92163836	92164165	+	92158066	92164165	A5SS	ENSMUST00000034932.14	known	0.00	0	55	0	55	n	0.18	6	27	6	27	y	0.00	0	11	0	11	n	0.04	3	76	3	76	y	0.11	9	73	9	73	y	0.00	0	7	0	7	n	0.13	8	54	8	54	y	0.19	4	17	4	17	y	0.10	4	35	4	35	y	0.13	11	71	11	71	y	0.06	3	47	3	47	y	0.00	0	40	0	40	n	ENSMUSG00000032372.15	Plscr2	chr9	protein_coding	phospholipid scramblase 2
known_NIR_20496	chr9	95367718	95371753	-	95367718;95370842	95370799;95371753	ES	ENSMUST00000079659.12	known	0.12	2	15.0	2	14;16	y	0.21	2	7.5	2	6;9	y	0.06	1	16.0	1	17;15	n	0.03	1	28.5	1	29;28	n	0.00	0	21.5	0	18;25	n	0.00	0	10.5	0	9;12	n	0.12	3	22.0	3	24;20	y	0.00	0	16.0	0	18;14	n	0.00	0	15.0	0	17;13	n	0.12	2	14.5	2	14;15	y	0.15	2	11.0	2	12;10	y	0.00	0	21.0	0	23;19	n	ENSMUSG00000032407.15	U2surp	chr9	protein_coding	U2 snRNP-associated SURP domain containing
known_NIR_20497	chr9	95373226	95373321	-	95373226	95373318	A5SS	ENSMUST00000079659.12	known	0.61	14	9	14	9	y	0.62	5	3	5	3	n	0.81	25	6	25	6	y	0.38	10	16	10	16	y	0.77	17	5	17	5	y	0.65	11	6	11	6	y	0.56	9	7	9	7	y	0.47	8	9	8	9	y	0.54	7	6	7	6	y	0.56	10	8	10	8	y	0.75	15	5	15	5	y	0.58	14	10	14	10	y	ENSMUSG00000032407.15	U2surp	chr9	protein_coding	U2 snRNP-associated SURP domain containing
known_NIR_20498	chr9	95377986	95384593	-	95377986;95382872	95382741;95384593	ES	ENSMUST00000079659.12	known	0.17	2	10.0	2	9;11	y	0.19	3	13.0	3	15;11	y	0.14	4	24.0	4	21;27	y	0.07	2	25.0	2	24;26	y	0.27	7	19.0	7	13;25	y	0.08	1	11.5	1	14;9	n	0.27	10	27.0	10	26;28	y	0.00	0	13.5	0	12;15	n	0.11	2	17.0	2	14;20	y	0.04	1	21.5	1	23;20	n	0.15	2	11.5	2	14;9	y	0.24	4	12.5	4	16;9	y	ENSMUSG00000032407.15	U2surp	chr9	protein_coding	U2 snRNP-associated SURP domain containing
known_NIR_20499	chr9	95921897	95927539	+	95921909	95927539	A5SS	ENSMUST00000034981.14	known	0.60	3	2	3	2	n	0.78	7	2	7	2	n	0.88	15	2	15	2	y	0.80	4	1	4	1	n	0.56	9	7	9	7	y	0.73	8	3	8	3	y	0.50	2	2	2	2	n	0.56	5	4	5	4	n	0.50	2	2	2	2	n	0.58	7	5	7	5	y	0.57	4	3	4	3	n	0.50	6	6	6	6	y	ENSMUSG00000032410.14	Xrn1	chr9	protein_coding	5'-3' exoribonuclease 1
known_NIR_20500	chr9	96084241	96114735	+	96084241	96105147	A3SS&ES	ENSMUST00000165120.9	known	0.00	0	10	0	10	n	0.08	1	12	1	12	n	0.00	0	9	0	9	n	0.08	1	11	1	11	n	0.15	2	11	2	11	y	0.00	0	5	0	5	n	0.06	1	16	1	16	n	0.12	1	7	1	7	n	0.00	0	3	0	3	n	0.08	1	12	1	12	n	0.00	0	9	0	9	n	0.12	3	22	3	22	y	ENSMUSG00000032411.16	Tfdp2	chr9	protein_coding	transcription factor Dp 2
known_NIR_20501	chr9	96084241;96105251	96105147;96114735	+	96084241	96114735	cassetteExon	ENSMUST00000188008.7	known	1.00	10.5	0	10;11	0	n	0.88	7.5	1	12;3	1	n	1.00	9.0	0	9;9	0	n	0.92	12.0	1	11;13	1	n	0.85	11.0	2	11;11	2	y	1.00	5.5	0	5;6	0	n	0.95	17.5	1	16;19	1	n	0.89	8.5	1	7;10	1	n	1.00	6.0	0	3;9	0	n	0.90	9.0	1	12;6	1	n	1.00	8.5	0	9;8	0	n	0.86	19.0	3	22;16	3	y	ENSMUSG00000032411.16	Tfdp2	chr9	protein_coding	transcription factor Dp 2
known_NIR_20502	chr9	96084241;96105251	96105147;96155892	+	96084241;96129141	96114735;96155892	MXE	ENSMUST00000185644.7	known	1.00	6.0	0.0	10;2	0;0	n	0.86	6.0	1.0	12;0	1;1	n	0.88	7.0	1.0	9;5	0;2	n	0.93	6.5	0.5	11;2	1;0	n	0.76	6.5	2.0	11;2	2;2	y	1.00	2.5	0.0	5;0	0;0	n	0.92	11.0	1.0	16;6	1;1	n	0.80	4.0	1.0	7;1	1;1	n	1.00	2.0	0.0	3;1	0;0	n	0.70	7.0	3.0	12;2	1;5	n	0.90	4.5	0.5	9;0	0;1	n	0.73	11.0	4.0	22;0	3;5	n	ENSMUSG00000032411.16	Tfdp2	chr9	protein_coding	transcription factor Dp 2
known_NIR_20503	chr9	96084241;96114801	96114735;96155892	+	96084241;96105251	96105147;96155892	MXE	ENSMUST00000034982.16	known	0.14	1.0	6.0	0;2	10;2	n	0.33	3.0	6.0	1;5	12;0	n	0.22	2.0	7.0	0;4	9;5	n	0.43	5.0	6.5	1;9	11;2	n	0.54	7.5	6.5	2;13	11;2	y	0.38	1.5	2.5	0;3	5;0	n	0.42	8.0	11.0	1;15	16;6	n	0.27	1.5	4.0	1;2	7;1	n	0.60	3.0	2.0	0;6	3;1	n	0.30	3.0	7.0	1;5	12;2	n	0.53	5.0	4.5	0;10	9;0	n	0.46	9.5	11.0	3;16	22;0	n	ENSMUSG00000032411.16	Tfdp2	chr9	protein_coding	transcription factor Dp 2
known_NIR_20504	chr9	96084241;96114801	96114735;96155892	+	96084241;96129141	96105147;96155892	MXE	ENSMUST00000188829.7	known	0.17	1.0	5.0	0;2	10;0	n	0.32	3.0	6.5	1;5	12;1	n	0.27	2.0	5.5	0;4	9;2	n	0.48	5.0	5.5	1;9	11;0	n	0.54	7.5	6.5	2;13	11;2	y	0.38	1.5	2.5	0;3	5;0	n	0.48	8.0	8.5	1;15	16;1	n	0.27	1.5	4.0	1;2	7;1	n	0.67	3.0	1.5	0;6	3;0	n	0.26	3.0	8.5	1;5	12;5	n	0.50	5.0	5.0	0;10	9;1	n	0.41	9.5	13.5	3;16	22;5	y	ENSMUSG00000032411.16	Tfdp2	chr9	protein_coding	transcription factor Dp 2
known_NIR_20505	chr9	96105251;96114801	96114735;96155892	+	96105251	96155892	cassetteExon	ENSMUST00000034982.16	known	0.76	6.5	2	11;2	2	y	1.00	4.0	0	3;5	0	n	0.57	6.5	5	9;4	5	y	0.85	11.0	2	13;9	2	y	0.86	12.0	2	11;13	2	y	1.00	4.5	0	6;3	0	n	0.74	17.0	6	19;15	6	y	0.86	6.0	1	10;2	1	n	0.88	7.5	1	9;6	1	n	0.73	5.5	2	6;5	2	y	1.00	9.0	0	8;10	0	n	1.00	16.0	0	16;16	0	n	ENSMUSG00000032411.16	Tfdp2	chr9	protein_coding	transcription factor Dp 2
known_NIR_20506	chr9	96114801	96155892	+	96114801	96129103	3pMXE	ENSMUST00000190709.7	known	1.00	2	0	2	0	n	1.00	5	0	5	0	n	0.67	4	2	4	2	n	1.00	9	0	9	0	n	0.93	13	1	13	1	n	1.00	3	0	3	0	n	0.88	15	2	15	2	y	0.50	2	2	2	2	n	0.86	6	1	6	1	n	0.45	5	6	5	6	y	0.91	10	1	10	1	n	0.73	16	6	16	6	y	ENSMUSG00000032411.16	Tfdp2	chr9	protein_coding	transcription factor Dp 2
known_NIR_20507	chr9	96114801;96129141	96129103;96155892	+	96114801	96155892	cassetteExon	ENSMUST00000188008.7	known	0.00	0.0	2	0;0	2	n	0.09	0.5	5	0;1	5	n	0.33	2.0	4	2;2	4	n	0.00	0.0	9	0;0	9	n	0.10	1.5	13	1;2	13	n	0.00	0.0	3	0;0	3	n	0.09	1.5	15	2;1	15	n	0.43	1.5	2	2;1	2	n	0.08	0.5	6	1;0	6	n	0.52	5.5	5	6;5	5	y	0.09	1.0	10	1;1	10	n	0.26	5.5	16	6;5	16	y	ENSMUSG00000032411.16	Tfdp2	chr9	protein_coding	transcription factor Dp 2
known_NIR_20508	chr9	96169775	96177018	+	96169775;96172680	96172633;96177018	ES	ENSMUST00000034982.16	known	0.55	9	7.5	9	9;6	y	0.43	5	6.5	5	7;6	y	0.47	8	9.0	8	10;8	y	0.42	8	11.0	8	14;8	y	0.27	5	13.5	5	12;15	y	0.22	1	3.5	1	4;3	n	0.34	9	17.5	9	16;19	y	0.57	8	6.0	8	6;6	y	0.41	7	10.0	7	8;12	y	0.37	11	19.0	11	25;13	y	0.43	9	12.0	9	8;16	y	0.50	23	23.0	23	25;21	y	ENSMUSG00000032411.16	Tfdp2	chr9	protein_coding	transcription factor Dp 2
known_NIR_20509	chr9	96177180	96179677	+	96177180	96179680	A3SS	ENSMUST00000165120.9	known	0.42	5	7	5	7	y	0.33	5	10	5	10	y	0.17	4	20	4	20	y	0.08	1	12	1	12	n	0.25	3	9	3	9	y	0.22	2	7	2	7	n	0.20	3	12	3	12	y	0.42	5	7	5	7	y	0.13	2	13	2	13	y	0.26	7	20	7	20	y	0.45	10	12	10	12	y	0.23	8	27	8	27	y	ENSMUSG00000032411.16	Tfdp2	chr9	protein_coding	transcription factor Dp 2
known_NIR_20510	chr9	96356058	96360468	-	96356058	96360461	A5SS	ENSMUST00000057500.6	known	0.00	0	192	0	192	n	0.00	0	141	0	141	n	0.00	0	221	0	221	n	0.00	0	159	0	159	n	0.00	0	218	0	218	n	0.00	0	111	0	111	n	0.00	0	191	0	191	n	0.00	0	152	0	152	n	0.00	0	133	0	133	n	0.00	0	234	0	234	n	0.00	0	187	0	187	n	0.01	2	165	2	165	y	ENSMUSG00000051234.7	Rnf7	chr9	protein_coding	ring finger protein 7
known_NIR_20511	chr9	96826757	96866059	-	96826757	96877628	A5SS	ENSMUST00000055433.5	known	1.00	1	0	1	0	n	0.40	2	3	2	3	n	-	-	-	-	-	-	1.00	6	0	6	0	n	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	4	2	4	2	n	0.50	1	1	1	1	n	0.70	7	3	7	3	y	0.75	6	2	6	2	n	ENSMUSG00000046997.6	Spsb4	chr9	protein_coding	splA/ryanodine receptor domain and SOCS box containing 4
known_NIR_20512	chr9	98285666	98302180	+	98285666	98292130	3pMXE	ENSMUST00000112935.8	known	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	25	0	25	n	0.06	1	15	1	15	n	0.18	4	18	4	18	y	0.20	1	4	1	4	n	0.14	3	19	3	19	y	0.00	0	25	0	25	n	0.00	0	16	0	16	n	0.03	1	28	1	28	n	0.04	1	22	1	22	n	0.00	0	21	0	21	n	ENSMUSG00000032456.14	Nmnat3	chr9	protein_coding	nicotinamide nucleotide adenylyltransferase 3
known_NIR_20513	chr9	99145002	99157631	+	99145002	99145682	3pMXE	ENSMUST00000185799.7	known	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.36	4	7	4	7	y	0.43	3	4	3	4	n	-	-	-	-	-	-	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.30	3	7	3	7	y	0.25	3	9	3	9	y	0.29	2	5	2	5	n	0.00	0	7	0	7	n	ENSMUSG00000056267.15	Cep70	chr9	protein_coding	centrosomal protein 70
known_NIR_20514	chr9	99145002	99157631	+	99145002;99145862	99145682;99157631	ES	ENSMUST00000093795.10	known	0.00	0	3.0	0	5;1	n	0.00	0	2.5	0	4;1	n	0.00	0	4.0	0	7;1	n	0.53	4	3.5	4	7;0	n	0.46	3	3.5	3	4;3	y	0.00	0	0.5	0	0;1	n	0.18	1	4.5	1	4;5	n	0.00	0	2.5	0	2;3	n	0.38	3	5.0	3	7;3	y	0.27	3	8.0	3	9;7	y	0.40	2	3.0	2	5;1	n	0.00	0	5.0	0	7;3	n	ENSMUSG00000056267.15	Cep70	chr9	protein_coding	centrosomal protein 70
known_NIR_20515	chr9	99419812	99450655	-	99419812;99433672	99433596;99450655	ES	ENSMUST00000035043.12	known	0.08	1	11.5	1	14;9	n	0.22	1	3.5	1	6;1	n	0.27	4	11.0	4	11;11	y	0.12	3	21.5	3	23;20	y	0.25	5	15.0	5	24;6	y	0.20	4	16.5	4	16;17	y	0.14	3	19.0	3	17;21	y	0.17	3	15.0	3	14;16	y	0.00	0	11.5	0	12;11	n	0.31	8	18.0	8	19;17	y	0.10	1	9.0	1	9;9	n	0.15	2	11.0	2	10;12	y	ENSMUSG00000032468.12	Armc8	chr9	protein_coding	armadillo repeat containing 8
known_NIR_20516	chr9	99419812	99450655	-	99433672	99450655	3pMXE	ENSMUST00000191370.2	known	0.10	1	9	1	9	n	0.50	1	1	1	1	n	0.27	4	11	4	11	y	0.13	3	20	3	20	y	0.45	5	6	5	6	y	0.19	4	17	4	17	y	0.12	3	21	3	21	y	0.16	3	16	3	16	y	0.00	0	11	0	11	n	0.32	8	17	8	17	y	0.10	1	9	1	9	n	0.14	2	12	2	12	y	ENSMUSG00000032468.12	Armc8	chr9	protein_coding	armadillo repeat containing 8
known_NIR_20517	chr9	99458753	99461410	+	99458753;99460574	99460494;99461410	ES	ENSMUST00000066650.12	known	0.00	0	15.5	0	9;22	n	0.00	0	9.5	0	8;11	n	0.20	2	8.0	2	4;12	y	0.05	1	18.5	1	16;21	n	0.00	0	18.5	0	19;18	n	0.17	2	9.5	2	8;11	y	0.00	0	20.0	0	13;27	n	0.00	0	8.0	0	7;9	n	0.00	0	15.5	0	10;21	n	0.17	4	19.5	4	17;22	y	0.00	0	12.0	0	11;13	n	0.00	0	12.5	0	8;17	n	ENSMUSG00000032469.13	Dbr1	chr9	protein_coding	debranching RNA lariats 1
known_NIR_20518	chr9	99464155	99464444	+	99464155	99464370	A3SS	ENSMUST00000066650.12	known	0.00	0	13	0	13	n	0.00	0	24	0	24	n	0.00	0	27	0	27	n	0.00	0	19	0	19	n	0.06	2	34	2	34	y	0.00	0	13	0	13	n	0.05	1	21	1	21	n	0.00	0	10	0	10	n	0.00	0	27	0	27	n	0.02	1	41	1	41	n	0.00	0	21	0	21	n	0.00	0	25	0	25	n	ENSMUSG00000032469.13	Dbr1	chr9	protein_coding	debranching RNA lariats 1
known_NIR_20519	chrX	100298879	100299719	+	100298879	100301783	A3SS	ENSMUST00000062000.6	known	0.00	0	41	0	41	n	0.00	0	38	0	38	n	0.04	1	24	1	24	n	0.05	2	42	2	42	y	0.00	0	73	0	73	n	0.00	0	11	0	11	n	0.00	0	67	0	67	n	0.15	4	23	4	23	y	0.00	0	42	0	42	n	0.02	1	55	1	55	n	0.00	0	55	0	55	n	0.00	0	61	0	61	n	ENSMUSG00000042903.9	Foxo4	chrX	protein_coding	forkhead box O4
known_NIR_20520	chrX	100337227	100337399	+	100337236	100337399	A5SS	ENSMUST00000117706.8	known	0.24	5	16	5	16	y	0.37	7	12	7	12	y	0.42	14	19	14	19	y	0.37	10	17	10	17	y	0.38	9	15	9	15	y	0.19	3	13	3	13	y	0.36	9	16	9	16	y	0.29	5	12	5	12	y	0.33	4	8	4	8	y	0.46	12	14	12	14	y	0.46	13	15	13	15	y	0.39	12	19	12	19	y	ENSMUSG00000079487.12	Med12	chrX	protein_coding	mediator complex subunit 12
known_NIR_20521	chrX	100420965	100427758	+	100420018	100427758	A5SS	ENSMUST00000119080.8	known	1.00	972	2	972	2	y	1.00	762	2	762	2	y	1.00	762	0	762	0	n	1.00	1112	2	1112	2	y	1.00	1548	2	1548	2	y	1.00	492	0	492	0	n	1.00	1325	2	1325	2	y	1.00	654	1	654	1	n	1.00	1129	1	1129	1	n	1.00	1516	0	1516	0	n	1.00	1219	3	1219	3	y	1.00	1600	0	1600	0	n	ENSMUSG00000047797.15	Gjb1	chrX	protein_coding	gap junction protein, beta 1
known_NIR_20522	chrX	100427448	100427758	+	100420018	100427758	A5SS	ENSMUST00000119080.8	known	0.75	6	2	6	2	n	0.75	6	2	6	2	n	1.00	8	0	8	0	n	0.83	10	2	10	2	y	0.71	5	2	5	2	n	-	-	-	-	-	-	0.88	15	2	15	2	y	0.86	6	1	6	1	n	0.93	13	1	13	1	n	1.00	20	0	20	0	n	0.67	6	3	6	3	n	1.00	9	0	9	0	n	ENSMUSG00000047797.15	Gjb1	chrX	protein_coding	gap junction protein, beta 1
known_NIR_20523	chrX	100427448	100427758	+	100420965	100427758	A5SS	ENSMUST00000052130.14	known	0.01	6	972	6	972	y	0.01	6	762	6	762	y	0.01	8	762	8	762	y	0.01	10	1112	10	1112	y	0.00	5	1548	5	1548	y	0.00	0	492	0	492	n	0.01	15	1325	15	1325	y	0.01	6	654	6	654	y	0.01	13	1129	13	1129	y	0.01	20	1516	20	1516	y	0.00	6	1219	6	1219	y	0.01	9	1600	9	1600	y	ENSMUSG00000047797.15	Gjb1	chrX	protein_coding	gap junction protein, beta 1
known_NIR_20524	chrX	100449625;100451065	100450811;100452083	-	100449625	100452083	cassetteExon	ENSMUST00000117901.8	known	1.00	11.5	0	13;10	0	n	1.00	8.0	0	5;11	0	n	1.00	7.5	0	5;10	0	n	1.00	13.5	0	12;15	0	n	0.92	22.0	2	17;27	2	y	1.00	12.5	0	13;12	0	n	1.00	12.5	0	11;14	0	n	1.00	7.0	0	5;9	0	n	1.00	10.5	0	12;9	0	n	0.95	17.5	1	17;18	1	n	1.00	9.0	0	9;9	0	n	0.95	21.0	1	24;18	1	n	ENSMUSG00000031310.17	Zmym3	chrX	protein_coding	zinc finger, MYM-type 3
known_NIR_20525	chrX	100452911	100453218	-	100452911	100453239	A5SS	ENSMUST00000117901.8	known	0.91	10	1	10	1	n	0.73	11	4	11	4	y	1.00	22	0	22	0	n	0.93	13	1	13	1	n	0.85	22	4	22	4	y	1.00	9	0	9	0	n	0.79	19	5	19	5	y	0.91	10	1	10	1	n	1.00	19	0	19	0	n	1.00	22	0	22	0	n	1.00	10	0	10	0	n	0.88	15	2	15	2	y	ENSMUSG00000031310.17	Zmym3	chrX	protein_coding	zinc finger, MYM-type 3
known_NIR_20526	chrX	100459544	100460515	-	100459544;100460067	100459773;100460515	ES	ENSMUST00000117901.8	known	0.29	3	7.5	3	7;8	y	0.24	2	6.5	2	6;7	y	0.08	2	22.5	2	33;12	y	0.05	1	19.5	1	15;24	n	0.15	3	16.5	3	22;11	y	0.18	1	4.5	1	6;3	n	0.06	1	16.0	1	18;14	n	0.20	2	8.0	2	6;10	y	0.31	5	11.0	5	17;5	y	0.00	0	15.5	0	17;14	n	0.17	2	10.0	2	6;14	y	0.32	7	15.0	7	12;18	y	ENSMUSG00000031310.17	Zmym3	chrX	protein_coding	zinc finger, MYM-type 3
known_NIR_20527	chrX	100459544	100460515	-	100460067	100460515	3pMXE	ENSMUST00000147017.8	known	0.27	3	8	3	8	y	0.22	2	7	2	7	n	0.14	2	12	2	12	y	0.04	1	24	1	24	n	0.21	3	11	3	11	y	0.25	1	3	1	3	n	0.07	1	14	1	14	n	0.17	2	10	2	10	y	0.50	5	5	5	5	y	0.00	0	14	0	14	n	0.12	2	14	2	14	y	0.28	7	18	7	18	y	ENSMUSG00000031310.17	Zmym3	chrX	protein_coding	zinc finger, MYM-type 3
known_NIR_20528	chrX	100460581	100460893	-	100460587	100460893	A3SS	ENSMUST00000117901.8	known	0.56	9	7	9	7	y	0.11	1	8	1	8	n	0.60	6	4	6	4	y	0.43	6	8	6	8	y	0.35	7	13	7	13	y	0.45	5	6	5	6	y	0.27	3	8	3	8	y	0.20	2	8	2	8	y	0.42	5	7	5	7	y	0.44	7	9	7	9	y	0.43	9	12	9	12	y	0.31	5	11	5	11	y	ENSMUSG00000031310.17	Zmym3	chrX	protein_coding	zinc finger, MYM-type 3
known_NIR_20529	chrX	100460936	100462401	-	100460936	100461879	A5SS	ENSMUST00000117901.8	known	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	20	0	20	n	0.00	0	11	0	11	n	0.17	1	5	1	5	n	0.12	1	7	1	7	n	0.31	4	9	4	9	y	0.36	5	9	5	9	y	0.05	1	18	1	18	n	0.00	0	13	0	13	n	ENSMUSG00000031310.17	Zmym3	chrX	protein_coding	zinc finger, MYM-type 3
known_NIR_20530	chrX	100460936	100463304	-	100460936	100461879	A5SS&ES	ENSMUST00000120107.8	known	0.12	1	7	1	7	n	0.20	1	4	1	4	n	0.00	0	9	0	9	n	0.15	2	11	2	11	y	0.00	0	20	0	20	n	0.08	1	11	1	11	n	0.17	1	5	1	5	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.10	1	9	1	9	n	0.05	1	18	1	18	n	0.07	1	13	1	13	n	ENSMUSG00000031310.17	Zmym3	chrX	protein_coding	zinc finger, MYM-type 3
known_NIR_20531	chrX	100460936	100463304	-	100460936;100462558	100461879;100463304	ES	ENSMUST00000117901.8	known	0.15	1	5.5	1	7;4	n	0.20	1	4.0	1	4;4	n	0.00	0	11.5	0	9;14	n	0.17	2	9.5	2	11;8	y	0.00	0	20.5	0	20;21	n	0.12	1	7.5	1	11;4	n	0.13	1	6.5	1	5;8	n	0.00	0	9.0	0	7;11	n	0.00	0	8.5	0	9;8	n	0.08	1	12.0	1	9;15	n	0.08	1	12.0	1	18;6	n	0.07	1	12.5	1	13;12	n	ENSMUSG00000031310.17	Zmym3	chrX	protein_coding	zinc finger, MYM-type 3
known_NIR_20532	chrX	100473368	100474102	+	100473368	100474099	A3SS	ENSMUST00000033673.7	known	0.05	6	123	6	123	y	0.08	6	69	6	69	y	0.09	13	128	13	128	y	0.10	14	121	14	121	y	0.05	8	149	8	149	y	0.11	7	55	7	55	y	0.09	10	106	10	106	y	0.08	6	73	6	73	y	0.08	8	92	8	92	y	0.12	18	138	18	138	y	0.07	7	99	7	99	y	0.07	11	156	11	156	y	ENSMUSG00000031311.18	Nono	chrX	protein_coding	non-POU-domain-containing, octamer binding protein
known_NIR_20533	chrX	100488423	100488901	+	100488396	100488901	A5SS	ENSMUST00000033673.7	known	0.02	4	186	4	186	y	0.03	5	183	5	183	y	0.02	5	201	5	201	y	0.00	1	227	1	227	n	0.03	6	223	6	223	y	0.02	2	111	2	111	y	0.03	9	254	9	254	y	0.02	2	114	2	114	y	0.01	1	173	1	173	n	0.03	8	283	8	283	y	0.01	2	235	2	235	y	0.01	3	241	3	241	y	ENSMUSG00000031311.18	Nono	chrX	protein_coding	non-POU-domain-containing, octamer binding protein
known_NIR_20534	chrX	100683928	100686582	+	100683928	100686612	A3SS	ENSMUST00000119299.8	known	0.49	21	22	21	22	y	0.58	11	8	11	8	y	0.67	30	15	30	15	y	0.67	51	25	51	25	y	0.69	58	26	58	26	y	0.70	19	8	19	8	y	0.81	42	10	42	10	y	0.64	30	17	30	17	y	0.59	29	20	29	20	y	0.70	40	17	40	17	y	0.65	28	15	28	15	y	0.58	38	28	38	28	y	ENSMUSG00000034160.14	Ogt	chrX	protein_coding	O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)
known_NIR_20535	chrX	100695814	100697582	+	100695814	100699230	A3SS	ENSMUST00000119299.8	known	0.38	3	5	3	5	n	0.00	0	8	0	8	n	0.12	1	7	1	7	n	0.20	3	12	3	12	y	0.12	3	22	3	22	y	0.00	0	12	0	12	n	0.06	1	15	1	15	n	0.00	0	12	0	12	n	0.11	1	8	1	8	n	0.08	1	11	1	11	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	ENSMUSG00000034160.14	Ogt	chrX	protein_coding	O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)
known_NIR_20536	chrX	101163336	101165274	+	101163170	101165274	A5SS	ENSMUST00000113627.4	known	0.01	1	124	1	124	n	0.00	0	164	0	164	n	0.00	0	123	0	123	n	0.01	2	141	2	141	y	0.00	0	162	0	162	n	0.00	0	70	0	70	n	0.00	0	155	0	155	n	0.00	0	106	0	106	n	0.00	0	146	0	146	n	0.00	0	220	0	220	n	0.00	0	174	0	174	n	0.01	1	166	1	166	n	ENSMUSG00000079480.4	Pin4	chrX	protein_coding	protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)
known_NIR_20537	chrX	101452571	101471721	-	101449315	101471721	A3SS	ENSMUST00000087916.11	known	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	19	0	19	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	18	0	18	n	0.12	3	21	3	21	y	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	19	0	19	n	ENSMUSG00000067567.13	Hdac8	chrX	protein_coding	histone deacetylase 8
known_NIR_20538	chrX	10178769	10181182	+	10178769	10186082	A3SS	ENSMUST00000049910.13	known	0.01	10	1393	10	1393	y	0.01	7	1365	7	1365	y	0.00	0	215	0	215	n	0.01	18	1574	18	1574	y	0.02	27	1243	27	1243	y	0.03	3	114	3	114	y	0.01	16	1367	16	1367	y	0.01	3	299	3	299	y	0.01	15	1631	15	1631	y	0.01	21	2116	21	2116	y	0.01	12	1957	12	1957	y	0.01	16	2268	16	2268	y	ENSMUSG00000031173.14	Otc	chrX	protein_coding	ornithine transcarbamylase
known_NIR_20539	chrX	102537553	102540044	+	102537306	102540044	A5SS	ENSMUST00000181020.9	known	0.00	0	9	0	9	n	0.07	1	14	1	14	n	0.25	4	12	4	12	y	0.00	0	8	0	8	n	0.29	7	17	7	17	y	0.17	1	5	1	5	n	0.11	2	17	2	17	y	0.15	2	11	2	11	y	0.08	2	23	2	23	y	0.10	2	18	2	18	y	0.29	4	10	4	10	y	0.19	3	13	3	13	y	ENSMUSG00000097571.10	Jpx	chrX	lncRNA	Jpx transcript, Xist activator (non-protein coding)
known_NIR_20540	chrX	102540136	102568473	+	102540136	102546466	3pMXE	ENSMUST00000181020.9	known	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.50	5	5	5	5	y	0.00	0	8	0	8	n	0.00	0	17	0	17	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.25	2	6	2	6	n	0.20	1	4	1	4	n	0.20	1	4	1	4	n	0.75	3	1	3	1	n	ENSMUSG00000097571.10	Jpx	chrX	lncRNA	Jpx transcript, Xist activator (non-protein coding)
known_NIR_20541	chrX	103022940	103024679	-	103022940	103024669	A5SS	ENSMUST00000121153.8	known	0.00	0	2	0	2	n	0.44	4	5	4	5	n	0.73	8	3	8	3	y	0.62	5	3	5	3	n	0.33	4	8	4	8	y	0.80	8	2	8	2	y	0.73	8	3	8	3	y	0.50	3	3	3	3	n	0.25	1	3	1	3	n	0.71	5	2	5	2	n	0.50	3	3	3	3	n	0.62	5	3	5	3	n	ENSMUSG00000056537.12	Rlim	chrX	protein_coding	ring finger protein, LIM domain interacting
known_NIR_20542	chrX	104087717	104091515	-	104083418	104091515	A3SS	ENSMUST00000127533.8	known	1.00	7	0	7	0	n	1.00	10	0	10	0	n	1.00	9	0	9	0	n	1.00	5	0	5	0	n	1.00	14	0	14	0	n	1.00	4	0	4	0	n	1.00	14	0	14	0	n	1.00	4	0	4	0	n	0.80	4	1	4	1	n	0.88	14	2	14	2	y	1.00	13	0	13	0	n	0.86	6	1	6	1	n	ENSMUSG00000087174.8	5530601H04Rik	chrX	lncRNA	RIKEN cDNA 5530601H04 gene
known_NIR_20543	chrX	104087717	104110365	-	104091616	104110365	A3SS&ES	ENSMUST00000127533.8	known	0.17	3	15	3	15	y	0.09	1	10	1	10	n	0.62	8	5	8	5	y	0.05	1	20	1	20	n	0.07	1	14	1	14	n	0.14	1	6	1	6	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.26	5	14	5	14	y	0.21	3	11	3	11	y	0.23	3	10	3	10	y	ENSMUSG00000087174.8	5530601H04Rik	chrX	lncRNA	RIKEN cDNA 5530601H04 gene
known_NIR_20544	chrX	104087717;104091616	104091515;104110365	-	104087717	104110365	cassetteExon	ENSMUST00000156974.8	known	0.79	11.0	3	7;15	3	y	0.91	10.0	1	10;10	1	n	0.47	7.0	8	9;5	8	y	0.93	12.5	1	5;20	1	n	0.93	14.0	1	14;14	1	n	0.83	5.0	1	4;6	1	n	1.00	13.0	0	14;12	0	n	1.00	3.0	0	4;2	0	n	0.78	3.5	1	4;3	1	n	0.74	14.0	5	14;14	5	y	0.80	12.0	3	13;11	3	y	0.73	8.0	3	6;10	3	y	ENSMUSG00000087174.8	5530601H04Rik	chrX	lncRNA	RIKEN cDNA 5530601H04 gene
known_NIR_20545	chrX	104110483	104112177	-	104110483	104112070	A5SS	ENSMUST00000127533.8	known	0.00	0	19	0	19	n	0.15	3	17	3	17	y	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.12	2	15	2	15	y	0.14	1	6	1	6	n	0.05	1	18	1	18	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.04	1	25	1	25	n	0.00	0	12	0	12	n	0.00	0	21	0	21	n	ENSMUSG00000087174.8	5530601H04Rik	chrX	lncRNA	RIKEN cDNA 5530601H04 gene
known_NIR_20546	chrX	104113281	104113671	-	104113281	104113606	A5SS	ENSMUST00000127533.8	known	0.25	2	6	2	6	n	0.13	2	13	2	13	y	0.71	5	2	5	2	n	0.06	1	15	1	15	n	0.00	0	16	0	16	n	0.00	0	2	0	2	n	0.11	1	8	1	8	n	0.22	2	7	2	7	n	0.00	0	8	0	8	n	0.07	1	14	1	14	n	0.14	1	6	1	6	n	0.00	0	7	0	7	n	ENSMUSG00000087174.8	5530601H04Rik	chrX	lncRNA	RIKEN cDNA 5530601H04 gene
known_NIR_20547	chrX	104126411	104159920	+	104126411	104126622	3pMXE	ENSMUST00000033577.11	known	0.17	7	34	7	34	y	0.31	12	27	12	27	y	0.22	16	58	16	58	y	0.27	9	24	9	24	y	0.31	17	37	17	37	y	0.39	14	22	14	22	y	0.16	8	41	8	41	y	0.28	9	23	9	23	y	0.21	7	27	7	27	y	0.24	9	29	9	29	y	0.22	8	28	8	28	y	0.19	5	21	5	21	y	ENSMUSG00000031226.14	Pbdc1	chrX	protein_coding	polysaccharide biosynthesis domain containing 1
known_NIR_20548	chrX	104869860	104873197	-	104869860	104874454	A5SS	ENSMUST00000113573.8	known	0.00	0	19	0	19	n	0.00	0	9	0	9	n	0.00	0	24	0	24	n	0.00	0	29	0	29	n	0.00	0	29	0	29	n	0.06	1	17	1	17	n	0.04	1	25	1	25	n	0.04	1	26	1	26	n	0.17	4	20	4	20	y	0.00	0	34	0	34	n	0.09	2	20	2	20	y	0.12	4	28	4	28	y	ENSMUSG00000031229.17	Atrx	chrX	protein_coding	ATRX, chromatin remodeler
known_NIR_20549	chrX	104876197	104879916	-	104876183	104879916	A3SS	ENSMUST00000113573.8	known	0.06	1	15	1	15	n	0.00	0	18	0	18	n	0.00	0	22	0	22	n	0.00	0	17	0	17	n	0.00	0	29	0	29	n	0.00	0	14	0	14	n	0.00	0	27	0	27	n	0.00	0	25	0	25	n	0.00	0	17	0	17	n	0.00	0	19	0	19	n	0.00	0	12	0	12	n	0.06	2	29	2	29	y	ENSMUSG00000031229.17	Atrx	chrX	protein_coding	ATRX, chromatin remodeler
known_NIR_20550	chrX	104923621	104927913	-	104923624	104927913	A3SS	ENSMUST00000113573.8	known	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	1.00	2	0	2	0	n	0.20	1	4	1	4	n	0.25	1	3	1	3	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.60	3	2	3	2	n	0.20	2	8	2	8	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000031229.17	Atrx	chrX	protein_coding	ATRX, chromatin remodeler
known_NIR_20551	chrX	104923621	104931321	-	104928026	104931321	A3SS&ES	ENSMUST00000113573.8	known	0.60	3	2	3	2	n	-	-	-	-	-	-	0.12	2	14	2	14	y	0.00	0	6	0	6	n	0.42	5	7	5	7	y	0.33	2	4	2	4	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	ENSMUSG00000031229.17	Atrx	chrX	protein_coding	ATRX, chromatin remodeler
known_NIR_20552	chrX	104923624	104931321	-	104923621	104931321	A3SS	ENSMUST00000128968.8	known	0.25	1	3	1	3	n	1.00	3	0	3	0	n	0.50	2	2	2	2	n	-	-	-	-	-	-	0.62	8	5	8	5	y	0.00	0	2	0	2	n	1.00	2	0	2	0	n	1.00	3	0	3	0	n	0.88	7	1	7	1	n	1.00	4	0	4	0	n	1.00	3	0	3	0	n	1.00	5	0	5	0	n	ENSMUSG00000031229.17	Atrx	chrX	protein_coding	ATRX, chromatin remodeler
known_NIR_20553	chrX	104923624	104931321	-	104923624;104928026	104927913;104931321	ES	ENSMUST00000113573.8	known	0.33	1	2.0	1	2;2	n	0.67	3	1.5	3	3;0	n	0.14	2	12.5	2	11;14	y	0.00	0	3.0	0	0;6	n	0.59	8	5.5	8	4;7	y	0.00	0	3.5	0	3;4	n	0.24	2	6.5	2	8;5	y	0.26	3	8.5	3	11;6	y	0.74	7	2.5	7	2;3	y	0.40	4	6.0	4	8;4	y	0.60	3	2.0	3	2;2	n	0.56	5	4.0	5	2;6	y	ENSMUSG00000031229.17	Atrx	chrX	protein_coding	ATRX, chromatin remodeler
known_NIR_20554	chrX	104923624	104931321	-	104928026	104931321	A3SS&ES	ENSMUST00000154866.8	known	0.33	1	2	1	2	n	1.00	3	0	3	0	n	0.12	2	14	2	14	y	0.00	0	6	0	6	n	0.53	8	7	8	7	y	0.00	0	4	0	4	n	0.29	2	5	2	5	n	0.33	3	6	3	6	n	0.70	7	3	7	3	y	0.50	4	4	4	4	n	0.60	3	2	3	2	n	0.45	5	6	5	6	y	ENSMUSG00000031229.17	Atrx	chrX	protein_coding	ATRX, chromatin remodeler
known_NIR_20555	chrX	105020365	105023012	-	105017881	105023012	A3SS	ENSMUST00000238718.2	known	0.00	0	112	0	112	n	0.00	0	75	0	75	n	0.01	2	157	2	157	y	0.00	0	109	0	109	n	0.00	0	212	0	212	n	0.00	0	110	0	110	n	0.00	0	141	0	141	n	0.00	0	120	0	120	n	0.00	0	80	0	80	n	0.00	0	142	0	142	n	0.00	0	122	0	122	n	0.00	0	143	0	143	n	ENSMUSG00000031232.18	Magt1	chrX	protein_coding	magnesium transporter 1
known_NIR_20556	chrX	105059476	105059711	+	105059476	105063185	A3SS	ENSMUST00000033582.5	known	0.00	0	1474	0	1474	n	0.00	0	1540	0	1540	n	0.01	10	1441	10	1441	y	0.00	1	1557	1	1557	n	0.00	0	1690	0	1690	n	0.01	5	896	5	896	y	0.00	4	1883	4	1883	y	0.00	1	867	1	867	n	0.00	0	1551	0	1551	n	0.00	5	2213	5	2213	y	0.00	5	1979	5	1979	y	0.00	0	2146	0	2146	n	ENSMUSG00000031231.5	Cox7b	chrX	protein_coding	cytochrome c oxidase subunit 7B
known_NIR_20557	chrX	10583739	10584226	+	10583943	10584226	A5SS	ENSMUST00000008179.7	known	0.00	0	92	0	92	n	0.00	0	39	0	39	n	0.00	0	27	0	27	n	0.00	0	113	0	113	n	0.00	0	80	0	80	n	0.00	0	6	0	6	n	0.00	0	83	0	83	n	0.00	0	32	0	32	n	0.00	0	86	0	86	n	0.02	2	130	2	130	y	0.00	0	122	0	122	n	0.00	0	133	0	133	n	ENSMUSG00000008035.13	Mid1ip1	chrX	protein_coding	Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))
known_NIR_20558	chrX	10583943	10584226	+	10581306	10584226	A5SS	ENSMUST00000144356.8	known	0.99	92	1	92	1	n	0.97	39	1	39	1	n	1.00	27	0	27	0	n	0.98	113	2	113	2	y	0.96	80	3	80	3	y	0.75	6	2	6	2	n	0.97	83	3	83	3	y	1.00	32	0	32	0	n	1.00	86	0	86	0	n	0.99	130	1	130	1	n	0.99	122	1	122	1	n	1.00	133	0	133	0	n	ENSMUSG00000008035.13	Mid1ip1	chrX	protein_coding	Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))
known_NIR_20559	chrX	10583943	10584226	+	10583943	10584223	A3SS	ENSMUST00000115524.8	known	0.81	92	21	92	21	y	0.87	39	6	39	6	y	0.84	27	5	27	5	y	0.79	113	30	113	30	y	0.70	80	34	80	34	y	0.60	6	4	6	4	y	0.81	83	19	83	19	y	0.78	32	9	32	9	y	0.73	86	32	86	32	y	0.72	130	50	130	50	y	0.73	122	44	122	44	y	0.78	133	38	133	38	y	ENSMUSG00000008035.13	Mid1ip1	chrX	protein_coding	Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))
known_NIR_20560	chrX	107878379	107879835	+	107878379	107879872	A3SS	ENSMUST00000131640.8	known	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.11	1	8	1	8	n	0.27	3	8	3	8	y	0.33	2	4	2	4	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.12	2	14	2	14	y	0.00	0	5	0	5	n	0.00	0	12	0	12	n	ENSMUSG00000086629.9	2810403D21Rik	chrX	lncRNA	RIKEN cDNA 2810403D21 gene
known_NIR_20561	chrX	107878379	107879872	+	107878291	107879872	A5SS	ENSMUST00000153212.8	known	1.00	4	0	4	0	n	1.00	6	0	6	0	n	0.76	16	5	16	5	y	0.89	8	1	8	1	n	0.89	8	1	8	1	n	0.80	4	1	4	1	n	0.91	10	1	10	1	n	1.00	2	0	2	0	n	0.40	2	3	2	3	n	0.88	14	2	14	2	y	1.00	5	0	5	0	n	0.80	12	3	12	3	y	ENSMUSG00000086629.9	2810403D21Rik	chrX	lncRNA	RIKEN cDNA 2810403D21 gene
known_NIR_20562	chrX	107878610	107879872	+	107878379	107879872	A5SS	ENSMUST00000131640.8	known	0.33	2	4	2	4	n	0.00	0	6	0	6	n	0.20	4	16	4	16	y	0.00	0	8	0	8	n	0.11	1	8	1	8	n	0.43	3	4	3	4	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.50	2	2	2	2	n	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.33	6	12	6	12	y	ENSMUSG00000086629.9	2810403D21Rik	chrX	lncRNA	RIKEN cDNA 2810403D21 gene
known_NIR_20563	chrX	107879961	107899486	+	107879961	107915078	A3SS	ENSMUST00000144421.8	known	0.75	3	1	3	1	n	0.50	1	1	1	1	n	0.45	5	6	5	6	y	0.29	2	5	2	5	n	0.43	3	4	3	4	n	0.80	4	1	4	1	n	0.00	0	4	0	4	n	0.75	3	1	3	1	n	0.00	0	3	0	3	n	0.40	2	3	2	3	n	0.00	0	1	0	1	n	0.50	5	5	5	5	y	ENSMUSG00000086629.9	2810403D21Rik	chrX	lncRNA	RIKEN cDNA 2810403D21 gene
known_NIR_20564	chrX	107879961	107899486	+	107879961	107929951	A3SS	ENSMUST00000131640.8	known	0.60	3	2	3	2	n	0.25	1	3	1	3	n	0.50	5	5	5	5	y	0.67	2	1	2	1	n	0.33	3	6	3	6	n	0.80	4	1	4	1	n	0.00	0	7	0	7	n	0.75	3	1	3	1	n	0.00	0	3	0	3	n	0.33	2	4	2	4	n	0.00	0	1	0	1	n	0.71	5	2	5	2	n	ENSMUSG00000086629.9	2810403D21Rik	chrX	lncRNA	RIKEN cDNA 2810403D21 gene
known_NIR_20565	chrX	107879961	107917874	+	107879961	107945070	A3SS	ENSMUST00000207966.2	known	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.30	3	7	3	7	y	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000086629.9	2810403D21Rik	chrX	lncRNA	RIKEN cDNA 2810403D21 gene
known_NIR_20566	chrX	107879961	107929951	+	107879961	107915078	A3SS&ES	ENSMUST00000123040.8	known	0.67	2	1	2	1	n	0.75	3	1	3	1	n	0.45	5	6	5	6	y	0.17	1	5	1	5	n	0.60	6	4	6	4	y	0.50	1	1	1	1	n	0.64	7	4	7	4	y	0.50	1	1	1	1	n	0.50	3	3	3	3	n	0.57	4	3	4	3	n	0.50	1	1	1	1	n	0.29	2	5	2	5	n	ENSMUSG00000086629.9	2810403D21Rik	chrX	lncRNA	RIKEN cDNA 2810403D21 gene
known_NIR_20567	chrX	107879961	107929951	+	107879961	107945070	A3SS	ENSMUST00000207966.2	known	0.33	2	4	2	4	n	0.43	3	4	3	4	n	0.56	5	4	5	4	n	1.00	1	0	1	0	n	1.00	6	0	6	0	n	1.00	1	0	1	0	n	0.88	7	1	7	1	n	0.33	1	2	1	2	n	0.75	3	1	3	1	n	0.36	4	7	4	7	y	1.00	1	0	1	0	n	0.50	2	2	2	2	n	ENSMUSG00000086629.9	2810403D21Rik	chrX	lncRNA	RIKEN cDNA 2810403D21 gene
known_NIR_20568	chrX	107879961	107929951	+	107879961;107915204	107915078;107929951	ES	ENSMUST00000144421.8	known	0.31	2	4.5	2	1;8	n	0.86	3	0.5	3	1;0	n	0.45	5	6.0	5	6;6	y	0.18	1	4.5	1	5;4	n	0.71	6	2.5	6	4;1	n	0.33	1	2.0	1	1;3	n	0.74	7	2.5	7	4;1	n	0.33	1	2.0	1	1;3	n	0.43	3	4.0	3	3;5	y	0.73	4	1.5	4	3;0	n	0.67	1	0.5	1	1;0	n	0.40	2	3.0	2	5;1	n	ENSMUSG00000086629.9	2810403D21Rik	chrX	lncRNA	RIKEN cDNA 2810403D21 gene
known_NIR_20569	chrX	107879961;107915204	107915078;107929951	+	107879961;107901978	107899486;107929951	MXE	ENSMUST00000153212.8	known	0.75	4.5	1.5	1;8	3;0	n	0.50	0.5	0.5	1;0	1;0	n	0.57	6.0	4.5	6;6	5;4	y	0.82	4.5	1.0	5;4	2;0	n	0.62	2.5	1.5	4;1	3;0	n	0.36	2.0	3.5	1;3	4;3	n	0.83	2.5	0.5	4;1	0;1	n	0.40	2.0	3.0	1;3	3;3	n	0.89	4.0	0.5	3;5	0;1	n	0.60	1.5	1.0	3;0	2;0	n	1.00	0.5	0.0	1;0	0;0	n	0.50	3.0	3.0	5;1	5;1	n	ENSMUSG00000086629.9	2810403D21Rik	chrX	lncRNA	RIKEN cDNA 2810403D21 gene
known_NIR_20570	chrX	107879961;107915204	107915078;107945070	+	107879961	107945070	cassetteExon	ENSMUST00000207966.2	known	0.11	0.5	4	1;0	4	n	0.11	0.5	4	1;0	4	n	0.43	3.0	4	6;0	4	n	1.00	3.0	0	5;1	0	n	1.00	2.0	0	4;0	0	n	1.00	0.5	0	1;0	0	n	0.75	3.0	1	4;2	1	n	0.20	0.5	2	1;0	2	n	0.67	2.0	1	3;1	1	n	0.26	2.5	7	3;2	7	y	1.00	0.5	0	1;0	0	n	0.56	2.5	2	5;0	2	n	ENSMUSG00000086629.9	2810403D21Rik	chrX	lncRNA	RIKEN cDNA 2810403D21 gene
known_NIR_20571	chrX	107901978	107929951	+	107915204	107929951	A5SS&ES	ENSMUST00000144421.8	known	0.00	0	8	0	8	n	-	-	-	-	-	-	0.40	4	6	4	6	y	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.50	3	3	3	3	n	0.50	1	1	1	1	n	0.50	3	3	3	3	n	0.17	1	5	1	5	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000086629.9	2810403D21Rik	chrX	lncRNA	RIKEN cDNA 2810403D21 gene
known_NIR_20572	chrX	107915204	107917874	+	107915204	107929951	A3SS	ENSMUST00000144421.8	known	0.11	1	8	1	8	n	1.00	3	0	3	0	n	0.50	6	6	6	6	y	0.43	3	4	3	4	n	0.90	9	1	9	1	n	0.67	6	3	6	3	n	0.80	4	1	4	1	n	0.40	2	3	2	3	n	0.17	1	5	1	5	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000086629.9	2810403D21Rik	chrX	lncRNA	RIKEN cDNA 2810403D21 gene
known_NIR_20573	chrX	108173016	108193521	+	108139243	108193521	A5SS	ENSMUST00000033598.9	known	0.03	4	155	4	155	y	0.00	0	131	0	131	n	0.00	1	260	1	260	n	0.00	0	224	0	224	n	0.00	0	292	0	292	n	0.00	0	162	0	162	n	0.00	0	291	0	291	n	0.00	0	223	0	223	n	0.01	1	146	1	146	n	0.02	4	254	4	254	y	0.00	0	152	0	152	n	0.01	3	197	3	197	y	ENSMUSG00000031246.15	Sh3bgrl	chrX	protein_coding	SH3-binding domain glutamic acid-rich protein like
known_NIR_20574	chrX	111263949	111274159	+	111263949;111273967	111273854;111274159	ES	ENSMUST00000026599.10	known	0.00	0	104.0	0	102;106	n	0.02	2	95.0	2	95;95	y	0.02	2	94.5	2	91;98	y	0.02	2	92.0	2	96;88	y	0.02	3	122.0	3	131;113	y	0.00	0	52.5	0	50;55	n	0.02	2	121.5	2	117;126	y	0.05	3	55.5	3	47;64	y	0.00	0	83.5	0	81;86	n	0.04	5	132.0	5	131;133	y	0.00	0	107.5	0	108;107	n	0.05	6	112.0	6	109;115	y	ENSMUSG00000025525.13	Apool	chrX	protein_coding	apolipoprotein O-like
known_NIR_20575	chrX	112026123	112050411	-	112049157	112050411	A3SS&ES	ENSMUST00000026607.15	known	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.00	0	28	0	28	n	0.30	3	7	3	7	y	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.00	0	16	0	16	n	ENSMUSG00000025531.15	Chm	chrX	protein_coding	choroidermia (RAB escort protein 1)
known_NIR_20576	chrX	11914784	11915234	-	11914886	11915234	A3SS	ENSMUST00000115513.9	known	0.83	5	1	5	1	n	0.63	12	7	12	7	y	0.53	19	17	19	17	y	0.67	6	3	6	3	n	0.57	13	10	13	10	y	0.45	5	6	5	6	y	0.75	12	4	12	4	y	0.39	7	11	7	11	y	0.65	11	6	11	6	y	0.80	20	5	20	5	y	0.58	11	8	11	8	y	0.63	12	7	12	7	y	ENSMUSG00000040363.16	Bcor	chrX	protein_coding	BCL6 interacting corepressor
known_NIR_20577	chrX	11921394	11922583	-	11921394;11921931	11921878;11922583	ES	ENSMUST00000115513.9	known	0.75	3	1.0	3	0;2	n	0.00	0	5.5	0	6;5	n	0.46	11	13.0	11	12;14	y	0.29	3	7.5	3	5;10	y	0.40	7	10.5	7	6;15	y	0.00	0	4.0	0	7;1	n	0.56	10	8.0	10	9;7	y	0.12	1	7.5	1	5;10	n	0.50	4	4.0	4	3;5	y	0.57	6	4.5	6	6;3	y	0.12	1	7.5	1	8;7	n	0.95	9	0.5	9	1;0	n	ENSMUSG00000040363.16	Bcor	chrX	protein_coding	BCL6 interacting corepressor
known_NIR_20578	chrX	12553440	12559824	-	12553440;12555699	12555568;12559824	ES	ENSMUST00000096495.11	known	0.11	1	8.5	1	13;4	n	0.50	2	2.0	2	3;1	n	0.42	8	11.0	8	10;12	y	0.27	3	8.0	3	6;10	y	0.00	0	5.5	0	3;8	n	0.00	0	4.5	0	7;2	n	0.70	7	3.0	7	2;4	y	0.62	4	2.5	4	0;5	n	0.88	7	1.0	7	2;0	n	0.29	3	7.5	3	7;8	y	0.43	5	6.5	5	6;7	y	0.00	0	7.5	0	8;7	n	ENSMUSG00000064127.14	Med14	chrX	protein_coding	mediator complex subunit 14
known_NIR_20579	chrX	12575479	12579822	-	12572931	12579822	A3SS	ENSMUST00000096495.11	known	0.43	3	4	3	4	n	0.00	0	9	0	9	n	0.20	2	8	2	8	y	0.12	1	7	1	7	n	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.09	1	10	1	10	n	0.14	1	6	1	6	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.09	1	10	1	10	n	0.00	0	10	0	10	n	ENSMUSG00000064127.14	Med14	chrX	protein_coding	mediator complex subunit 14
known_NIR_20580	chrX	128650865;128702176	128702144;128704762	+	128650865	128704762	cassetteExon	ENSMUST00000127577.8	known	1.00	1.0	0	1;1	0	n	0.00	0.0	2	0;0	2	n	0.73	5.5	2	6;5	2	y	0.76	6.5	2	6;7	2	y	0.60	3.0	2	3;3	2	n	1.00	7.5	0	7;8	0	n	0.67	2.0	1	2;2	1	n	0.88	7.5	1	8;7	1	n	0.71	2.5	1	2;3	1	n	0.53	4.5	4	4;5	4	y	0.78	3.5	1	2;5	1	n	0.67	2.0	1	3;1	1	n	ENSMUSG00000034480.19	Diaph2	chrX	protein_coding	diaphanous related formin 2
known_NIR_20581	chrX	128722092	128803649	+	128722092;128726696	128726676;128803649	ES	ENSMUST00000127577.8	known	0.00	0	2.0	0	2;2	n	0.00	0	3.0	0	3;3	n	0.42	5	7.0	5	6;8	y	0.86	6	1.0	6	0;2	n	0.00	0	1.0	0	1;1	n	0.00	0	3.0	0	3;3	n	0.00	0	1.5	0	0;3	n	0.22	1	3.5	1	4;3	n	0.00	0	2.0	0	3;1	n	0.46	3	3.5	3	3;4	y	0.50	1	1.0	1	1;1	n	0.00	0	3.0	0	2;4	n	ENSMUSG00000034480.19	Diaph2	chrX	protein_coding	diaphanous related formin 2
known_NIR_20582	chrX	128873358	128942397	+	128873358	128948074	A3SS	ENSMUST00000127577.8	known	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.16	3	16	3	16	y	0.00	0	4	0	4	n	0.18	3	14	3	14	y	0.17	1	5	1	5	n	0.17	2	10	2	10	y	0.27	3	8	3	8	y	0.00	0	6	0	6	n	0.18	2	9	2	9	y	0.20	2	8	2	8	y	0.30	3	7	3	7	y	ENSMUSG00000034480.19	Diaph2	chrX	protein_coding	diaphanous related formin 2
known_NIR_20583	chrX	12980883	12982848	+	12980883	12982863	A3SS	ENSMUST00000169594.9	known	0.79	11	3	11	3	y	1.00	3	0	3	0	n	0.40	22	33	22	33	y	0.67	18	9	18	9	y	0.41	16	23	16	23	y	0.38	14	23	14	23	y	0.50	16	16	16	16	y	0.44	15	19	15	19	y	0.64	7	4	7	4	y	0.57	12	9	12	9	y	0.56	5	4	5	4	n	0.38	14	23	14	23	y	ENSMUSG00000031010.18	Usp9x	chrX	protein_coding	ubiquitin specific peptidase 9, X chromosome
known_NIR_20584	chrX	13031771	13032871	+	13031723	13032871	A5SS	ENSMUST00000089302.11	known	0.05	7	147	7	147	y	0.03	4	112	4	112	y	0.02	4	218	4	218	y	0.03	4	123	4	123	y	0.04	7	190	7	190	y	0.04	6	130	6	130	y	0.02	3	192	3	192	y	0.05	7	130	7	130	y	0.01	1	116	1	116	n	0.04	8	186	8	186	y	0.01	2	145	2	145	y	0.03	5	195	5	195	y	ENSMUSG00000031010.18	Usp9x	chrX	protein_coding	ubiquitin specific peptidase 9, X chromosome
known_NIR_20585	chrX	132970656	132973885	+	132970656	132973164	A3SS&ES	ENSMUST00000156778.8	known	1.00	5	0	5	0	n	1.00	4	0	4	0	n	1.00	18	0	18	0	n	1.00	10	0	10	0	n	1.00	11	0	11	0	n	1.00	11	0	11	0	n	0.86	12	2	12	2	y	1.00	8	0	8	0	n	1.00	12	0	12	0	n	1.00	9	0	9	0	n	1.00	15	0	15	0	n	1.00	11	0	11	0	n	ENSMUSG00000031256.12	Cstf2	chrX	protein_coding	cleavage stimulation factor, 3' pre-RNA subunit 2
known_NIR_20586	chrX	132970656	132973885	+	132970656	132973963	A3SS	ENSMUST00000113287.8	known	1.00	5	0	5	0	n	0.80	4	1	4	1	n	0.95	18	1	18	1	n	1.00	10	0	10	0	n	0.92	11	1	11	1	n	0.85	11	2	11	2	y	0.92	12	1	12	1	n	0.73	8	3	8	3	y	1.00	12	0	12	0	n	1.00	9	0	9	0	n	0.88	15	2	15	2	y	0.92	11	1	11	1	n	ENSMUSG00000031256.12	Cstf2	chrX	protein_coding	cleavage stimulation factor, 3' pre-RNA subunit 2
known_NIR_20587	chrX	133163633	133167010	-	133163633;133164610	133164476;133167010	ES	ENSMUST00000128115.8	known	0.03	1	35.0	1	40;30	n	0.10	2	19.0	2	18;20	y	0.07	2	26.5	2	30;23	y	0.06	2	33.0	2	38;28	y	0.09	4	39.5	4	42;37	y	0.12	3	21.0	3	28;14	y	0.09	5	50.5	5	49;52	y	0.00	0	16.5	0	19;14	n	0.00	0	36.5	0	39;34	n	0.02	1	59.0	1	66;52	n	0.08	3	34.0	3	38;30	y	0.07	3	42.5	3	47;38	y	ENSMUSG00000067369.13	Trmt2b	chrX	protein_coding	TRM2 tRNA methyltransferase 2B
known_NIR_20588	chrX	133168310;133171334	133171259;133177595	-	133168310	133177595	cassetteExon	ENSMUST00000128115.8	known	0.17	3.5	17	5;2	17	y	0.24	2.5	8	3;2	8	y	0.12	3.0	23	1;5	23	n	0.12	5.5	39	7;4	39	y	0.07	3.0	43	3;3	43	y	0.03	0.5	17	0;1	17	n	0.07	3.0	41	2;4	41	y	0.17	4.0	20	5;3	20	y	0.14	5.0	30	5;5	30	y	0.06	3.0	51	3;3	51	y	0.27	5.5	15	10;1	15	n	0.08	4.5	49	4;5	49	y	ENSMUSG00000067369.13	Trmt2b	chrX	protein_coding	TRM2 tRNA methyltransferase 2B
known_NIR_20589	chrX	133486932	133487261	+	133486932	133487260	A3SS	ENSMUST00000113211.8	known	0.00	2	1543	2	1543	y	0.00	0	1778	0	1778	n	0.00	0	2163	0	2163	n	0.00	0	1285	0	1285	n	0.00	0	1926	0	1926	n	0.00	0	1143	0	1143	n	0.00	0	2334	0	2334	n	0.00	1	1169	1	1169	n	0.00	0	1251	0	1251	n	0.00	0	1869	0	1869	n	0.00	0	1672	0	1672	n	0.00	0	1652	0	1652	n	ENSMUSG00000079435.10	Rpl36a	chrX	protein_coding	ribosomal protein L36A
known_NIR_20590	chrX	133503511	133505604	+	133503511	133503667	A3SS	ENSMUST00000113202.8	known	0.65	50	27	50	27	y	0.73	54	20	54	20	y	0.74	113	40	113	40	y	0.46	53	61	53	61	y	0.66	75	39	75	39	y	0.67	35	17	35	17	y	0.69	59	27	59	27	y	0.75	51	17	51	17	y	0.63	48	28	48	28	y	0.70	71	30	71	30	y	0.55	34	28	34	28	y	0.57	60	45	60	45	y	ENSMUSG00000045427.14	Hnrnph2	chrX	protein_coding	heterogeneous nuclear ribonucleoprotein H2
known_NIR_20591	chrX	133503511;133503711	133503667;133505604	+	133503511	133505604	cassetteExon	ENSMUST00000074950.11	known	0.33	24.5	50	27;22	50	y	0.24	17.0	54	20;14	54	y	0.25	38.5	113	40;37	113	y	0.50	53.0	53	61;45	53	y	0.38	45.5	75	39;52	75	y	0.30	15.0	35	17;13	35	y	0.33	28.5	59	27;30	59	y	0.26	18.0	51	17;19	51	y	0.32	23.0	48	28;18	48	y	0.31	32.0	71	30;34	71	y	0.45	27.5	34	28;27	34	y	0.41	42.5	60	45;40	60	y	ENSMUSG00000045427.14	Hnrnph2	chrX	protein_coding	heterogeneous nuclear ribonucleoprotein H2
known_NIR_20592	chrX	133657479	133657985	+	133657479	133658013	A3SS	ENSMUST00000081834.10	known	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.02	2	80	2	80	y	0.03	1	30	1	30	n	0.07	2	28	2	28	y	0.00	0	39	0	39	n	0.00	0	23	0	23	n	0.11	4	32	4	32	y	0.08	1	11	1	11	n	0.00	0	25	0	25	n	0.00	0	21	0	21	n	0.00	0	19	0	19	n	ENSMUSG00000049047.12	Armcx3	chrX	protein_coding	armadillo repeat containing, X-linked 3
known_NIR_20593	chrX	13415600	13418612	-	13415600;13417221	13417186;13418612	ES	ENSMUST00000115438.10	known	0.61	7	4.5	7	9;0	n	0.67	3	1.5	3	2;1	n	0.89	17	2.0	17	4;0	n	0.75	12	4.0	12	7;1	n	0.71	11	4.5	11	6;3	y	0.43	3	4.0	3	6;2	y	0.61	11	7.0	11	11;3	y	0.52	6	5.5	6	7;4	y	0.53	5	4.5	5	9;0	n	0.50	8	8.0	8	13;3	y	0.56	7	5.5	7	8;3	y	0.50	6	6.0	6	9;3	y	ENSMUSG00000031012.18	Cask	chrX	protein_coding	calcium/calmodulin-dependent serine protein kinase (MAGUK family)
known_NIR_20594	chrX	13415600	13421117	-	13415600;13417221	13417186;13421117	ES	ENSMUST00000156096.8	known	0.44	6	7.5	6	9;6	y	0.67	4	2.0	4	2;2	n	0.62	5	3.0	5	4;2	y	0.48	6	6.5	6	7;6	y	0.65	11	6.0	11	6;6	y	0.44	4	5.0	4	6;4	y	0.39	6	9.5	6	11;8	y	0.54	7	6.0	7	7;5	y	0.48	8	8.5	8	9;8	y	0.58	15	11.0	15	13;9	y	0.64	14	8.0	14	8;8	y	0.52	8	7.5	8	9;6	y	ENSMUSG00000031012.18	Cask	chrX	protein_coding	calcium/calmodulin-dependent serine protein kinase (MAGUK family)
known_NIR_20595	chrX	13415600	13421117	-	13415600;13418680	13418612;13421117	ES	ENSMUST00000033321.11	known	0.44	6	7.5	6	7;8	y	0.57	4	3.0	4	3;3	y	0.19	5	21.5	5	17;26	y	0.29	6	14.5	6	12;17	y	0.44	11	14.0	11	11;17	y	0.47	4	4.5	4	3;6	y	0.33	6	12.0	6	11;13	y	0.56	7	5.5	7	6;5	y	0.57	8	6.0	8	5;7	y	0.61	15	9.5	15	8;11	y	0.60	14	9.5	14	7;12	y	0.48	8	8.5	8	6;11	y	ENSMUSG00000031012.18	Cask	chrX	protein_coding	calcium/calmodulin-dependent serine protein kinase (MAGUK family)
known_NIR_20596	chrX	13415600;13418680	13418612;13421117	-	13415600;13417221	13417186;13421117	MXE	ENSMUST00000156096.8	known	0.50	7.5	7.5	7;8	9;6	y	0.60	3.0	2.0	3;3	2;2	y	0.88	21.5	3.0	17;26	4;2	y	0.69	14.5	6.5	12;17	7;6	y	0.70	14.0	6.0	11;17	6;6	y	0.47	4.5	5.0	3;6	6;4	y	0.56	12.0	9.5	11;13	11;8	y	0.48	5.5	6.0	6;5	7;5	y	0.41	6.0	8.5	5;7	9;8	y	0.46	9.5	11.0	8;11	13;9	y	0.54	9.5	8.0	7;12	8;8	y	0.53	8.5	7.5	6;11	9;6	y	ENSMUSG00000031012.18	Cask	chrX	protein_coding	calcium/calmodulin-dependent serine protein kinase (MAGUK family)
known_NIR_20597	chrX	13417221;13418680	13418612;13421117	-	13417221	13421117	cassetteExon	ENSMUST00000156096.8	known	0.40	4.0	6	0;8	6	n	0.50	2.0	2	1;3	2	n	0.87	13.0	2	0;26	2	n	0.60	9.0	6	1;17	6	n	0.62	10.0	6	3;17	6	y	0.50	4.0	4	2;6	4	y	0.50	8.0	8	3;13	8	y	0.47	4.5	5	4;5	5	y	0.30	3.5	8	0;7	8	n	0.44	7.0	9	3;11	9	y	0.48	7.5	8	3;12	8	y	0.54	7.0	6	3;11	6	y	ENSMUSG00000031012.18	Cask	chrX	protein_coding	calcium/calmodulin-dependent serine protein kinase (MAGUK family)
known_NIR_20598	chrX	134643727	134645248	+	134643727;134644363	134644312;134645248	ES	ENSMUST00000096321.3	known	0.27	2	5.5	2	5;6	y	0.15	1	5.5	1	6;5	n	0.11	2	16.5	2	16;17	y	0.00	0	7.0	0	7;7	n	0.33	4	8.0	4	8;8	y	0.18	2	9.0	2	9;9	y	0.18	4	18.5	4	20;17	y	0.00	0	8.5	0	8;9	n	0.27	3	8.0	3	11;5	y	0.24	3	9.5	3	12;7	y	0.29	4	10.0	4	10;10	y	0.26	5	14.0	5	10;18	y	ENSMUSG00000072969.3	Armcx5	chrX	protein_coding	armadillo repeat containing, X-linked 5
known_NIR_20599	chrX	134643727;134644271	134644191;134645248	+	134643727	134645248	cassetteExon	ENSMUST00000113144.8	known	0.67	4.0	2	2;6	2	y	0.60	1.5	1	1;2	1	n	0.50	2.0	2	0;4	2	n	1.00	1.5	0	1;2	0	n	0.53	4.5	4	3;6	4	y	0.33	1.0	2	0;2	2	n	0.62	6.5	4	3;10	4	y	-	-	-	-	-	-	0.25	1.0	3	0;2	3	n	0.14	0.5	3	0;1	3	n	0.33	2.0	4	4;0	4	n	0.29	2.0	5	4;0	5	n	ENSMUSG00000043384.16	Gprasp1	chrX	protein_coding	G protein-coupled receptor associated sorting protein 1
known_NIR_20600	chrX	134643727;134644271	134644191;134645248	+	134643727;134644363	134644312;134645248	MXE	ENSMUST00000096321.3	known	0.42	4.0	5.5	2;6	5;6	y	0.21	1.5	5.5	1;2	6;5	n	0.11	2.0	16.5	0;4	16;17	n	0.18	1.5	7.0	1;2	7;7	n	0.36	4.5	8.0	3;6	8;8	y	0.10	1.0	9.0	0;2	9;9	n	0.26	6.5	18.5	3;10	20;17	y	0.00	0.0	8.5	0;0	8;9	n	0.11	1.0	8.0	0;2	11;5	n	0.05	0.5	9.5	0;1	12;7	n	0.17	2.0	10.0	4;0	10;10	n	0.12	2.0	14.0	4;0	10;18	n	ENSMUSG00000072969.3	Armcx5	chrX	protein_coding	armadillo repeat containing, X-linked 5
known_NIR_20601	chrX	134643727;134644363	134644191;134645248	+	134643727	134645248	cassetteExon	ENSMUST00000113144.8	known	0.67	4.0	2	2;6	2	y	0.75	3.0	1	1;5	1	n	0.81	8.5	2	0;17	2	n	1.00	4.0	0	1;7	0	n	0.58	5.5	4	3;8	4	y	0.69	4.5	2	0;9	2	n	0.71	10.0	4	3;17	4	y	1.00	4.5	0	0;9	0	n	0.45	2.5	3	0;5	3	n	0.54	3.5	3	0;7	3	n	0.64	7.0	4	4;10	4	y	0.69	11.0	5	4;18	5	y	ENSMUSG00000043384.16	Gprasp1	chrX	protein_coding	G protein-coupled receptor associated sorting protein 1
known_NIR_20602	chrX	134645324	134649405	+	134645324	134645668	3pMXE	ENSMUST00000096321.3	known	0.88	14	2	14	2	y	0.60	6	4	6	4	y	1.00	19	0	19	0	n	0.86	19	3	19	3	y	0.50	6	6	6	6	y	1.00	11	0	11	0	n	0.73	22	8	22	8	y	0.58	11	8	11	8	y	0.79	11	3	11	3	y	0.90	19	2	19	2	y	0.86	6	1	6	1	n	0.95	20	1	20	1	n	ENSMUSG00000072969.3	Armcx5	chrX	protein_coding	armadillo repeat containing, X-linked 5
known_NIR_20603	chrX	134652766	134696891	+	134652766	134662478	3pMXE	ENSMUST00000149595.8	known	0.00	0	22	0	22	n	0.00	0	6	0	6	n	0.00	0	21	0	21	n	0.07	1	13	1	13	n	0.08	1	12	1	12	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.00	0	17	0	17	n	0.00	0	7	0	7	n	0.12	2	14	2	14	y	0.00	0	10	0	10	n	0.00	0	17	0	17	n	ENSMUSG00000043384.16	Gprasp1	chrX	protein_coding	G protein-coupled receptor associated sorting protein 1
known_NIR_20604	chrX	134652766	134698302	+	134652766	134662478	3pMXE	ENSMUST00000149595.8	known	0.00	0	22	0	22	n	0.00	0	6	0	6	n	0.09	2	21	2	21	y	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.12	2	15	2	15	y	0.00	0	17	0	17	n	0.00	0	7	0	7	n	0.07	1	14	1	14	n	0.00	0	10	0	10	n	0.00	0	17	0	17	n	ENSMUSG00000043384.16	Gprasp1	chrX	protein_coding	G protein-coupled receptor associated sorting protein 1
known_NIR_20605	chrX	135071798	135072385	-	135071798	135072169	A5SS	ENSMUST00000136533.2	known	0.99	68	1	68	1	n	1.00	86	0	86	0	n	0.99	138	2	138	2	y	1.00	59	0	59	0	n	1.00	88	0	88	0	n	0.99	69	1	69	1	n	1.00	90	0	90	0	n	1.00	83	0	83	0	n	1.00	59	0	59	0	n	0.98	82	2	82	2	y	1.00	85	0	85	0	n	1.00	70	0	70	0	n	ENSMUSG00000051579.11	Tceal8	chrX	protein_coding	transcription elongation factor A (SII)-like 8
known_NIR_20606	chrX	135171631	135172058	+	135171631	135172012	A3SS	ENSMUST00000053540.11	known	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.50	5	5	5	5	y	-	-	-	-	-	-	0.50	3	3	3	3	n	0.50	3	3	3	3	n	0.20	1	4	1	4	n	-	-	-	-	-	-	0.67	2	1	2	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	ENSMUSG00000046432.13	Bex3	chrX	protein_coding	brain expressed X-linked 3
known_NIR_20607	chrX	135635250	135640554	-	135635250;135636371	135636295;135640554	ES	ENSMUST00000033797.13	known	0.01	3	246.0	3	290;202	y	0.00	0	200.0	0	225;175	n	0.01	5	495.0	5	563;427	y	0.01	3	268.0	3	309;227	y	0.00	0	348.5	0	382;315	n	0.01	4	286.0	4	293;279	y	0.02	4	253.0	4	277;229	y	0.00	1	221.5	1	236;207	n	0.01	2	147.0	2	171;123	y	0.00	0	258.0	0	273;243	n	0.00	1	203.0	1	248;158	n	0.00	0	254.0	0	274;234	n	ENSMUSG00000031422.17	Morf4l2	chrX	protein_coding	mortality factor 4 like 2
known_NIR_20608	chrX	135635250	135640554	-	135636371	135640554	3pMXE	ENSMUST00000137979.2	known	0.01	3	202	3	202	y	0.00	0	175	0	175	n	0.01	5	427	5	427	y	0.01	3	227	3	227	y	0.00	0	315	0	315	n	0.01	4	279	4	279	y	0.02	4	229	4	229	y	0.00	1	207	1	207	n	0.02	2	123	2	123	y	0.00	0	243	0	243	n	0.01	1	158	1	158	n	0.00	0	234	0	234	n	ENSMUSG00000031422.17	Morf4l2	chrX	protein_coding	mortality factor 4 like 2
known_NIR_20609	chrX	135640643	135641959	-	135640643	135641695	5pMXE	ENSMUST00000166930.8	known	1.00	107	0	107	0	n	0.99	75	1	75	1	n	1.00	271	1	271	1	n	1.00	139	0	139	0	n	0.99	178	2	178	2	y	0.98	155	3	155	3	y	0.99	138	1	138	1	n	0.99	132	2	132	2	y	1.00	75	0	75	0	n	0.99	106	1	106	1	n	0.99	97	1	97	1	n	1.00	131	0	131	0	n	ENSMUSG00000031422.17	Morf4l2	chrX	protein_coding	mortality factor 4 like 2
known_NIR_20610	chrX	135640643	135641959	-	135640643	135642142	A5SS	ENSMUST00000033797.13	known	1.00	107	0	107	0	n	1.00	75	0	75	0	n	1.00	271	1	271	1	n	1.00	139	0	139	0	n	0.99	178	1	178	1	n	0.99	155	1	155	1	n	1.00	138	0	138	0	n	0.99	132	1	132	1	n	0.97	75	2	75	2	y	0.96	106	4	106	4	y	1.00	97	0	97	0	n	1.00	131	0	131	0	n	ENSMUSG00000031422.17	Morf4l2	chrX	protein_coding	mortality factor 4 like 2
known_NIR_20611	chrX	135640643	135643573	-	135640643	135641695	5pMXE	ENSMUST00000166930.8	known	1.00	13	0	13	0	n	0.50	1	1	1	1	n	0.75	3	1	3	1	n	1.00	5	0	5	0	n	0.85	11	2	11	2	y	0.57	4	3	4	3	n	0.88	7	1	7	1	n	0.71	5	2	5	2	n	1.00	4	0	4	0	n	0.92	12	1	12	1	n	0.86	6	1	6	1	n	1.00	7	0	7	0	n	ENSMUSG00000031422.17	Morf4l2	chrX	protein_coding	mortality factor 4 like 2
known_NIR_20612	chrX	135640643	135643573	-	135640643	135641959	5pMXE	ENSMUST00000080411.13	known	0.11	13	107	13	107	y	0.01	1	75	1	75	n	0.01	3	271	3	271	y	0.03	5	139	5	139	y	0.06	11	178	11	178	y	0.03	4	155	4	155	y	0.05	7	138	7	138	y	0.04	5	132	5	132	y	0.05	4	75	4	75	y	0.10	12	106	12	106	y	0.06	6	97	6	97	y	0.05	7	131	7	131	y	ENSMUSG00000031422.17	Morf4l2	chrX	protein_coding	mortality factor 4 like 2
known_NIR_20613	chrX	135640643	135643573	-	135640643	135642142	5pMXE	ENSMUST00000033797.13	known	1.00	13	0	13	0	n	1.00	1	0	1	0	n	0.75	3	1	3	1	n	1.00	5	0	5	0	n	0.92	11	1	11	1	n	0.80	4	1	4	1	n	1.00	7	0	7	0	n	0.83	5	1	5	1	n	0.67	4	2	4	2	n	0.75	12	4	12	4	y	1.00	6	0	6	0	n	1.00	7	0	7	0	n	ENSMUSG00000031422.17	Morf4l2	chrX	protein_coding	mortality factor 4 like 2
known_NIR_20614	chrX	135640643;135641868	135641695;135641959	-	135640643	135641959	cassetteExon	ENSMUST00000080411.13	known	0.00	0.0	107	0;0	107	n	0.01	1.0	75	1;1	75	n	0.01	2.0	271	1;3	271	n	0.00	0.0	139	0;0	139	n	0.01	2.0	178	2;2	178	y	0.01	1.5	155	3;0	155	n	0.01	1.0	138	1;1	138	n	0.01	1.0	132	2;0	132	n	0.00	0.0	75	0;0	75	n	0.01	1.5	106	1;2	106	n	0.03	2.5	97	1;4	97	n	0.01	1.5	131	0;3	131	n	ENSMUSG00000031422.17	Morf4l2	chrX	protein_coding	mortality factor 4 like 2
known_NIR_20615	chrX	135648197	135658850	+	135648197;135657369	135657243;135658850	ES	ENSMUST00000146801.8	known	0.29	1	2.5	1	3;2	n	0.67	1	0.5	1	1;0	n	0.00	0	1.0	0	0;2	n	0.40	1	1.5	1	3;0	n	0.50	4	4.0	4	3;5	y	-	-	-	-	-	-	0.80	2	0.5	2	1;0	n	0.40	1	1.5	1	3;0	n	0.18	1	4.5	1	4;5	n	0.62	4	2.5	4	3;2	n	0.80	2	0.5	2	1;0	n	0.00	0	0.5	0	0;1	n	ENSMUSG00000087368.8	BC065397	chrX	lncRNA	cDNA sequence BC065397
known_NIR_20616	chrX	13581010	13652158	-	13581010	13652176	A5SS	ENSMUST00000156096.8	known	0.18	3	14	3	14	y	0.00	0	5	0	5	n	0.05	1	19	1	19	n	0.06	1	16	1	16	n	0.00	0	14	0	14	n	0.13	2	13	2	13	y	0.07	2	26	2	26	y	0.20	2	8	2	8	y	0.00	0	9	0	9	n	0.00	0	26	0	26	n	0.00	0	19	0	19	n	0.00	0	22	0	22	n	ENSMUSG00000031012.18	Cask	chrX	protein_coding	calcium/calmodulin-dependent serine protein kinase (MAGUK family)
known_NIR_20617	chrX	135874988	135876147	-	135857588	135876147	A3SS	ENSMUST00000127404.8	known	0.62	5	3	5	3	n	0.36	4	7	4	7	y	0.67	4	2	4	2	n	0.42	5	7	5	7	y	0.41	7	10	7	10	y	1.00	6	0	6	0	n	0.17	2	10	2	10	y	0.36	4	7	4	7	y	0.50	8	8	8	8	y	0.40	6	9	6	9	y	0.38	3	5	3	5	n	0.43	3	4	3	4	n	ENSMUSG00000072955.15	Tmsb15l	chrX	protein_coding	thymosin beta 15b like
known_NIR_20618	chrX	137984467	137984554	-	137983936	137984554	A3SS	ENSMUST00000060824.4	known	1.00	5	0	5	0	n	0.96	48	2	48	2	y	1.00	159	0	159	0	n	1.00	14	0	14	0	n	1.00	25	0	25	0	n	0.69	9	4	9	4	y	1.00	27	0	27	0	n	1.00	30	0	30	0	n	1.00	11	0	11	0	n	0.94	74	5	74	5	y	0.90	19	2	19	2	y	0.97	28	1	28	1	n	ENSMUSG00000031271.15	Serpina7	chrX	protein_coding	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7
known_NIR_20619	chrX	137984467	137985937	-	137984647	137985937	A3SS&ES	ENSMUST00000060824.4	known	1.00	9	0	9	0	n	0.81	29	7	29	7	y	0.73	90	34	90	34	y	0.92	11	1	11	1	n	0.82	18	4	18	4	y	0.62	5	3	5	3	n	0.91	20	2	20	2	y	0.79	23	6	23	6	y	0.60	6	4	6	4	y	0.67	24	12	24	12	y	0.76	13	4	13	4	y	0.68	15	7	15	7	y	ENSMUSG00000031271.15	Serpina7	chrX	protein_coding	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7
known_NIR_20620	chrX	137984467;137984647	137984554;137985937	-	137984467	137985937	cassetteExon	ENSMUST00000033626.15	known	0.22	2.5	9	5;0	9	n	0.49	27.5	29	48;7	29	y	0.52	96.5	90	159;34	90	y	0.41	7.5	11	14;1	11	n	0.45	14.5	18	25;4	18	y	0.55	6.0	5	9;3	5	y	0.42	14.5	20	27;2	20	y	0.44	18.0	23	30;6	23	y	0.56	7.5	6	11;4	6	y	0.64	43.0	24	74;12	24	y	0.47	11.5	13	19;4	13	y	0.54	17.5	15	28;7	15	y	ENSMUSG00000031271.15	Serpina7	chrX	protein_coding	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7
known_NIR_20621	chrX	137984467;137984650	137984554;137985937	-	137984467	137985937	cassetteExon	ENSMUST00000033626.15	known	0.22	2.5	9	5;0	9	n	0.48	26.5	29	48;5	29	y	0.51	92.0	90	159;25	90	y	0.44	8.5	11	14;3	11	y	0.49	17.5	18	25;10	18	y	0.47	4.5	5	9;0	5	n	0.46	17.0	20	27;7	20	y	0.45	18.5	23	30;7	23	y	0.52	6.5	6	11;2	6	y	0.66	46.0	24	74;18	24	y	0.49	12.5	13	19;6	13	y	0.53	17.0	15	28;6	15	y	ENSMUSG00000031271.15	Serpina7	chrX	protein_coding	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7
known_NIR_20622	chrX	137984650	137985937	-	137984647	137985937	A3SS	ENSMUST00000060824.4	known	-	-	-	-	-	-	0.42	5	7	5	7	y	0.42	25	34	25	34	y	0.75	3	1	3	1	n	0.71	10	4	10	4	y	0.00	0	3	0	3	n	0.78	7	2	7	2	n	0.54	7	6	7	6	y	0.33	2	4	2	4	n	0.60	18	12	18	12	y	0.60	6	4	6	4	y	0.46	6	7	6	7	y	ENSMUSG00000031271.15	Serpina7	chrX	protein_coding	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7
known_NIR_20623	chrX	138512038	138543035	+	138464632	138543035	A5SS	ENSMUST00000113027.8	known	1.00	120	0	120	0	n	1.00	86	0	86	0	n	1.00	90	0	90	0	n	1.00	167	0	167	0	n	1.00	225	0	225	0	n	0.97	67	2	67	2	y	0.99	196	1	196	1	n	1.00	141	0	141	0	n	1.00	125	0	125	0	n	1.00	220	0	220	0	n	1.00	121	0	121	0	n	1.00	179	0	179	0	n	ENSMUSG00000031438.12	Rnf128	chrX	protein_coding	ring finger protein 128
known_NIR_20624	chrX	138566289	138572485	+	138566289	138572484	A3SS	ENSMUST00000113027.8	known	0.00	0	203	0	203	n	0.00	0	177	0	177	n	0.00	0	150	0	150	n	0.00	0	216	0	216	n	0.00	0	273	0	273	n	0.00	0	107	0	107	n	0.00	0	244	0	244	n	0.00	0	125	0	125	n	0.00	0	169	0	169	n	0.00	0	270	0	270	n	0.00	0	213	0	213	n	0.02	5	221	5	221	y	ENSMUSG00000031438.12	Rnf128	chrX	protein_coding	ring finger protein 128
known_NIR_20625	chrX	138723577	138723879	-	138723577	138723917	A5SS	ENSMUST00000136415.9	known	1.00	4	0	4	0	n	1.00	4	0	4	0	n	0.87	13	2	13	2	y	1.00	3	0	3	0	n	0.92	11	1	11	1	n	1.00	11	0	11	0	n	0.60	3	2	3	2	n	0.79	11	3	11	3	y	0.60	3	2	3	2	n	0.50	2	2	2	2	n	1.00	1	0	1	0	n	1.00	2	0	2	0	n	ENSMUSG00000031434.16	Morc4	chrX	protein_coding	microrchidia 4
known_NIR_20626	chrX	139442905	139443595	-	139442905	139443260	5pMXE	ENSMUST00000112995.3	known	1.00	230	0	230	0	n	0.99	265	2	265	2	y	1.00	67	0	67	0	n	1.00	219	0	219	0	n	0.99	159	1	159	1	n	1.00	56	0	56	0	n	0.99	131	1	131	1	n	1.00	56	0	56	0	n	1.00	127	0	127	0	n	1.00	243	1	243	1	n	1.00	86	0	86	0	n	1.00	142	0	142	0	n	ENSMUSG00000031431.14	Tsc22d3	chrX	protein_coding	TSC22 domain family, member 3
known_NIR_20627	chrX	139442905	139498877	-	139442905	139443260	5pMXE	ENSMUST00000112995.3	known	1.00	96	0	96	0	n	0.98	86	2	86	2	y	1.00	45	0	45	0	n	1.00	60	0	60	0	n	0.99	83	1	83	1	n	1.00	27	0	27	0	n	0.99	74	1	74	1	n	1.00	31	0	31	0	n	1.00	33	0	33	0	n	0.98	60	1	60	1	n	1.00	38	0	38	0	n	1.00	48	0	48	0	n	ENSMUSG00000031431.14	Tsc22d3	chrX	protein_coding	TSC22 domain family, member 3
known_NIR_20628	chrX	139442905	139498877	-	139442905	139443595	5pMXE	ENSMUST00000055738.12	known	0.29	96	230	96	230	y	0.25	86	265	86	265	y	0.40	45	67	45	67	y	0.22	60	219	60	219	y	0.34	83	159	83	159	y	0.33	27	56	27	56	y	0.36	74	131	74	131	y	0.36	31	56	31	56	y	0.21	33	127	33	127	y	0.20	60	243	60	243	y	0.31	38	86	38	86	y	0.25	48	142	48	142	y	ENSMUSG00000031431.14	Tsc22d3	chrX	protein_coding	TSC22 domain family, member 3
known_NIR_20629	chrX	139850058	139852975	-	139850058	139852896	A5SS	ENSMUST00000033805.15	known	0.13	7	47	7	47	y	0.05	3	58	3	58	y	0.12	17	123	17	123	y	0.13	11	74	11	74	y	0.16	15	81	15	81	y	0.15	9	53	9	53	y	0.11	8	62	8	62	y	0.10	6	56	6	56	y	0.18	7	31	7	31	y	0.14	12	75	12	75	y	0.09	6	60	6	60	y	0.10	8	76	8	76	y	ENSMUSG00000031429.15	Psmd10	chrX	protein_coding	proteasome (prosome, macropain) 26S subunit, non-ATPase, 10
known_NIR_20630	chrX	139887138	139889029	+	139887138	139888915	3pMXE	ENSMUST00000239543.1	known	0.00	0	10	0	10	n	0.00	0	17	0	17	n	0.00	0	34	0	34	n	0.05	1	21	1	21	n	0.03	1	28	1	28	n	0.00	0	34	0	34	n	0.00	0	29	0	29	n	0.00	0	17	0	17	n	0.00	0	22	0	22	n	0.00	0	27	0	27	n	0.00	0	21	0	21	n	0.09	2	20	2	20	y	ENSMUSG00000079418.6	Atg4a	chrX	protein_coding	autophagy related 4A, cysteine peptidase
known_NIR_20631	chrX	139887138	139890907	+	139887138	139888915	3pMXE	ENSMUST00000239543.1	known	0.17	2	10	2	10	y	0.29	7	17	7	17	y	0.06	2	34	2	34	y	0.00	0	21	0	21	n	0.12	4	28	4	28	y	0.00	0	34	0	34	n	0.26	10	29	10	29	y	0.06	1	17	1	17	n	0.15	4	22	4	22	y	0.07	2	27	2	27	y	0.16	4	21	4	21	y	0.05	1	20	1	20	n	ENSMUSG00000079418.6	Atg4a	chrX	protein_coding	autophagy related 4A, cysteine peptidase
known_NIR_20632	chrX	139887138	139890907	+	139887138;139888986	139888915;139890907	ES	ENSMUST00000112971.2	known	0.12	2	14.5	2	10;19	y	0.30	7	16.0	7	17;15	y	0.05	2	37.5	2	34;41	y	0.00	0	21.5	0	21;22	n	0.12	4	28.0	4	28;28	y	0.00	0	37.0	0	34;40	n	0.26	10	29.0	10	29;29	y	0.05	1	19.0	1	17;21	n	0.17	4	20.0	4	22;18	y	0.07	2	26.5	2	27;26	y	0.16	4	20.5	4	21;20	y	0.05	1	17.5	1	20;15	n	ENSMUSG00000079418.6	Atg4a	chrX	protein_coding	autophagy related 4A, cysteine peptidase
known_NIR_20633	chrX	139887138;139889114	139889029;139890907	+	139887138;139888986	139888915;139890907	MXE	ENSMUST00000112971.2	known	0.00	0.0	14.5	0;0	10;19	n	0.00	0.0	16.0	0;0	17;15	n	0.00	0.0	37.5	0;0	34;41	n	0.02	0.5	21.5	1;0	21;22	n	0.03	1.0	28.0	1;1	28;28	n	0.00	0.0	37.0	0;0	34;40	n	0.00	0.0	29.0	0;0	29;29	n	0.00	0.0	19.0	0;0	17;21	n	0.00	0.0	20.0	0;0	22;18	n	0.00	0.0	26.5	0;0	27;26	n	0.00	0.0	20.5	0;0	21;20	n	0.10	2.0	17.5	2;2	20;15	y	ENSMUSG00000079418.6	Atg4a	chrX	protein_coding	autophagy related 4A, cysteine peptidase
known_NIR_20634	chrX	141011957	141012520	+	141011377	141012520	A5SS	ENSMUST00000112916.9	known	0.03	1	38	1	38	n	0.00	0	30	0	30	n	0.00	0	49	0	49	n	0.00	0	47	0	47	n	0.00	0	39	0	39	n	0.00	0	21	0	21	n	0.00	0	52	0	52	n	0.00	0	26	0	26	n	0.00	0	41	0	41	n	0.08	5	57	5	57	y	0.04	2	45	2	45	y	0.00	0	63	0	63	n	ENSMUSG00000042271.14	Nxt2	chrX	protein_coding	nuclear transport factor 2-like export factor 2
known_NIR_20635	chrX	141134611	141143383	-	141134614	141143383	A3SS	ENSMUST00000112904.8	known	0.22	4	14	4	14	y	0.29	2	5	2	5	n	0.28	12	31	12	31	y	0.20	6	24	6	24	y	0.26	12	34	12	34	y	0.23	7	23	7	23	y	0.37	7	12	7	12	y	0.33	7	14	7	14	y	0.32	6	13	6	13	y	0.31	8	18	8	18	y	0.25	6	18	6	18	y	0.29	14	34	14	34	y	ENSMUSG00000031278.13	Acsl4	chrX	protein_coding	acyl-CoA synthetase long-chain family member 4
known_NIR_20636	chrX	141464552	141535036	+	141464552;141465945	141465287;141535036	ES	ENSMUST00000087333.9	known	0.57	2	1.5	2	0;3	n	0.44	2	2.5	2	2;3	n	0.14	1	6.0	1	1;11	n	0.55	3	2.5	3	0;5	n	0.70	8	3.5	8	1;6	n	0.00	0	3.5	0	1;6	n	0.62	4	2.5	4	2;3	n	0.46	3	3.5	3	3;4	y	0.44	2	2.5	2	0;5	n	0.00	0	4.5	0	2;7	n	0.47	4	4.5	4	3;6	y	0.59	5	3.5	5	1;6	n	ENSMUSG00000047045.18	Tmem164	chrX	protein_coding	transmembrane protein 164
known_NIR_20637	chrX	141464552	141553963	+	141464552;141535085	141535036;141553963	ES	ENSMUST00000112889.8	known	0.00	0	3.5	0	2;5	n	0.00	0	4.5	0	2;7	n	0.00	0	5.0	0	1;9	n	0.00	0	5.5	0	3;8	n	0.00	0	13.0	0	8;18	n	0.00	0	2.5	0	0;5	n	0.00	0	7.5	0	4;11	n	0.22	2	7.0	2	3;11	y	0.00	0	8.5	0	2;15	n	0.20	1	4.0	1	0;8	n	0.00	0	6.5	0	4;9	n	0.17	2	10.0	2	5;15	y	ENSMUSG00000047045.18	Tmem164	chrX	protein_coding	transmembrane protein 164
known_NIR_20638	chrX	141465945	141535036	+	141464552	141535036	A5SS	ENSMUST00000112889.8	known	0.60	3	2	3	2	n	0.60	3	2	3	2	n	0.92	11	1	11	1	n	0.62	5	3	5	3	n	0.43	6	8	6	8	y	1.00	6	0	6	0	n	0.43	3	4	3	4	n	0.57	4	3	4	3	n	0.71	5	2	5	2	n	1.00	7	0	7	0	n	0.60	6	4	6	4	y	0.55	6	5	6	5	y	ENSMUSG00000047045.18	Tmem164	chrX	protein_coding	transmembrane protein 164
known_NIR_20639	chrX	141615597	141624579	+	141615597	141617181	3pMXE	ENSMUST00000101198.9	known	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.07	1	13	1	13	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.18	2	9	2	9	y	0.00	0	7	0	7	n	0.00	0	16	0	16	n	ENSMUSG00000047045.18	Tmem164	chrX	protein_coding	transmembrane protein 164
known_NIR_20640	chrX	143101117	143102999	+	143101117	143102895	A3SS	ENSMUST00000070801.11	known	0.00	0	13	0	13	n	0.30	3	7	3	7	y	0.14	3	18	3	18	y	0.38	3	5	3	5	n	0.22	5	18	5	18	y	0.38	3	5	3	5	n	0.07	1	14	1	14	n	0.05	1	18	1	18	n	0.09	1	10	1	10	n	0.05	1	18	1	18	n	0.25	2	6	2	6	n	0.50	12	12	12	12	y	ENSMUSG00000041718.17	Alg13	chrX	protein_coding	asparagine-linked glycosylation 13
known_NIR_20641	chrX	143105146	143119108	+	143105146	143107012	3pMXE	ENSMUST00000070801.11	known	0.00	0	8	0	8	n	0.09	1	10	1	10	n	0.00	0	22	0	22	n	0.00	0	14	0	14	n	0.00	0	15	0	15	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.60	3	2	3	2	n	0.18	2	9	2	9	y	0.38	5	8	5	8	y	0.00	0	9	0	9	n	0.11	2	16	2	16	y	ENSMUSG00000041718.17	Alg13	chrX	protein_coding	asparagine-linked glycosylation 13
known_NIR_20642	chrX	143136624	143139792	+	143136624;143138648	143138580;143139792	ES	ENSMUST00000238864.2	known	0.00	0	5.0	0	5;5	n	0.33	1	2.0	1	2;2	n	0.18	1	4.5	1	4;5	n	0.29	1	2.5	1	2;3	n	0.33	3	6.0	3	5;7	y	0.38	3	5.0	3	4;6	y	0.27	3	8.0	3	6;10	y	0.60	3	2.0	3	2;2	n	0.13	1	6.5	1	3;10	n	0.50	3	3.0	3	3;3	n	0.00	0	1.5	0	2;1	n	0.31	2	4.5	2	3;6	y	ENSMUSG00000041718.17	Alg13	chrX	protein_coding	asparagine-linked glycosylation 13
known_NIR_20643	chrX	149203437	149218366	-	149203437	149241958	A5SS	ENSMUST00000173996.8	known	0.00	0	32	0	32	n	0.00	0	18	0	18	n	0.00	0	25	0	25	n	0.00	0	28	0	28	n	0.00	0	43	0	43	n	0.00	0	16	0	16	n	0.06	2	29	2	29	y	0.00	0	20	0	20	n	0.00	0	25	0	25	n	0.00	0	34	0	34	n	0.00	0	25	0	25	n	0.00	0	43	0	43	n	ENSMUSG00000041353.13	Tmem29	chrX	protein_coding	transmembrane protein 29
known_NIR_20644	chrX	149203437	149218366	-	149203437	149242068	A5SS	ENSMUST00000151067.8	known	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	19	0	19	n	0.00	0	23	0	23	n	0.00	0	6	0	6	n	0.12	2	15	2	15	y	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.00	0	25	0	25	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	ENSMUSG00000041353.13	Tmem29	chrX	protein_coding	transmembrane protein 29
known_NIR_20645	chrX	149203437	149223763	-	149203437	149241958	A5SS	ENSMUST00000173996.8	known	0.00	0	32	0	32	n	0.00	0	18	0	18	n	0.11	3	25	3	25	y	0.00	0	28	0	28	n	0.07	3	43	3	43	y	0.38	10	16	10	16	y	0.03	1	29	1	29	n	0.20	5	20	5	20	y	0.00	0	25	0	25	n	0.00	0	34	0	34	n	0.00	0	25	0	25	n	0.09	4	43	4	43	y	ENSMUSG00000041353.13	Tmem29	chrX	protein_coding	transmembrane protein 29
known_NIR_20646	chrX	149203437	149242068	-	149203437	149223763	5pMXE	ENSMUST00000163233.2	known	1.00	6	0	6	0	n	1.00	10	0	10	0	n	0.83	15	3	15	3	y	1.00	19	0	19	0	n	0.88	23	3	23	3	y	0.38	6	10	6	10	y	0.94	15	1	15	1	n	0.76	16	5	16	5	y	1.00	13	0	13	0	n	1.00	25	0	25	0	n	1.00	9	0	9	0	n	0.78	14	4	14	4	y	ENSMUSG00000041353.13	Tmem29	chrX	protein_coding	transmembrane protein 29
known_NIR_20647	chrX	149203437	149242068	-	149203437	149241958	A5SS	ENSMUST00000173996.8	known	0.16	6	32	6	32	y	0.36	10	18	10	18	y	0.38	15	25	15	25	y	0.40	19	28	19	28	y	0.35	23	43	23	43	y	0.27	6	16	6	16	y	0.34	15	29	15	29	y	0.44	16	20	16	20	y	0.34	13	25	13	25	y	0.42	25	34	25	34	y	0.26	9	25	9	25	y	0.25	14	43	14	43	y	ENSMUSG00000041353.13	Tmem29	chrX	protein_coding	transmembrane protein 29
known_NIR_20648	chrX	149335340	149336000	+	149335340	149335955	A3SS	ENSMUST00000066337.13	known	0.09	13	133	13	133	y	0.10	12	114	12	114	y	0.12	9	69	9	69	y	0.08	20	246	20	246	y	0.12	21	159	21	159	y	0.13	6	39	6	39	y	0.07	13	175	13	175	y	0.10	9	78	9	78	y	0.12	19	145	19	145	y	0.12	33	241	33	241	y	0.15	30	165	30	165	y	0.13	37	255	37	255	y	ENSMUSG00000025270.14	Alas2	chrX	protein_coding	aminolevulinic acid synthase 2, erythroid
known_NIR_20649	chrX	149355678	149367461	-	149305206	149367461	A3SS	ENSMUST00000112725.8	known	0.91	21	2	21	2	y	1.00	18	0	18	0	n	0.79	11	3	11	3	y	0.88	14	2	14	2	y	0.89	24	3	24	3	y	0.94	17	1	17	1	n	1.00	14	0	14	0	n	0.82	14	3	14	3	y	0.80	8	2	8	2	y	0.86	19	3	19	3	y	0.93	13	1	13	1	n	0.74	26	9	26	9	y	ENSMUSG00000025269.17	Apex2	chrX	protein_coding	apurinic/apyrimidinic endonuclease 2
known_NIR_20650	chrX	149369062	149370039	-	149369041	149370039	A3SS	ENSMUST00000112725.8	known	0.05	1	20	1	20	n	0.00	0	15	0	15	n	0.05	1	19	1	19	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.00	0	25	0	25	n	0.00	0	18	0	18	n	0.14	2	12	2	12	y	0.08	1	11	1	11	n	0.00	0	11	0	11	n	0.00	0	22	0	22	n	ENSMUSG00000025269.17	Apex2	chrX	protein_coding	apurinic/apyrimidinic endonuclease 2
known_NIR_20651	chrX	149377770	149391582	+	149373080	149391582	A5SS	ENSMUST00000153221.8	known	0.89	67	8	67	8	y	0.97	29	1	29	1	n	0.88	14	2	14	2	y	0.90	61	7	61	7	y	0.95	126	7	126	7	y	0.96	55	2	55	2	y	0.90	79	9	79	9	y	0.96	64	3	64	3	y	0.95	57	3	57	3	y	0.94	48	3	48	3	y	0.97	36	1	36	1	n	0.84	49	9	49	9	y	ENSMUSG00000025271.14	Pfkfb1	chrX	protein_coding	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1
known_NIR_20652	chrX	149405199	149407143	+	149405199	149408153	A3SS	ENSMUST00000153221.8	known	0.01	1	78	1	78	n	0.05	2	38	2	38	y	0.03	1	35	1	35	n	0.03	3	88	3	88	y	0.02	4	181	4	181	y	0.09	7	72	7	72	y	0.02	2	93	2	93	y	0.02	2	86	2	86	y	0.03	2	56	2	56	y	0.02	2	83	2	83	y	0.00	0	57	0	57	n	0.01	1	74	1	74	n	ENSMUSG00000025271.14	Pfkfb1	chrX	protein_coding	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1
known_NIR_20653	chrX	149417623;149419058	149418939;149422577	+	149417623	149422577	cassetteExon	ENSMUST00000080884.11	known	0.01	2.0	136	3;1	136	n	0.01	1.0	103	0;2	103	n	0.00	0.0	47	0;0	47	n	0.01	1.5	111	2;1	111	n	0.01	3.0	255	3;3	255	y	0.00	0.0	121	0;0	121	n	0.02	3.0	171	2;4	171	y	0.01	1.5	124	0;3	124	n	0.02	1.5	96	1;2	96	n	0.01	0.5	93	1;0	93	n	0.01	1.5	129	2;1	129	n	0.01	1.0	100	0;2	100	n	ENSMUSG00000025271.14	Pfkfb1	chrX	protein_coding	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1
known_NIR_20654	chrX	149797146	149800197	-	149797085	149800197	A3SS	ENSMUST00000112691.9	known	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	15	0	15	n	0.05	1	18	1	18	n	0.15	2	11	2	11	y	0.33	1	2	1	2	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.08	1	12	1	12	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	ENSMUSG00000025266.12	Gnl3l	chrX	protein_coding	guanine nucleotide binding protein-like 3 (nucleolar)-like
known_NIR_20655	chrX	149873410	149873592	-	149873410	149873601	A5SS	ENSMUST00000112683.9	known	0.32	8	17	8	17	y	0.38	14	23	14	23	y	0.12	4	28	4	28	y	0.27	10	27	10	27	y	0.34	14	27	14	27	y	0.18	3	14	3	14	y	0.28	10	26	10	26	y	0.17	3	15	3	15	y	0.40	16	24	16	24	y	0.15	7	41	7	41	y	0.29	12	30	12	30	y	0.33	15	31	15	31	y	ENSMUSG00000025264.13	Tsr2	chrX	protein_coding	TSR2 20S rRNA accumulation
known_NIR_20656	chrX	149874763	149879425	-	149874763;149879251	149879161;149879425	ES	ENSMUST00000112683.9	known	0.20	6	24.5	6	26;23	y	0.00	0	25.0	0	26;24	n	0.19	6	25.0	6	22;28	y	0.00	0	25.5	0	27;24	n	0.06	2	30.5	2	27;34	y	0.00	0	16.0	0	17;15	n	0.00	0	26.5	0	29;24	n	0.09	2	20.5	2	20;21	y	0.00	0	20.0	0	26;14	n	0.07	2	25.0	2	26;24	y	0.00	0	21.5	0	30;13	n	0.13	3	20.5	3	24;17	y	ENSMUSG00000025264.13	Tsr2	chrX	protein_coding	TSR2 20S rRNA accumulation
known_NIR_20657	chrX	149874763	149879425	-	149879251	149879425	A3SS&ES	ENSMUST00000166689.2	known	0.21	6	23	6	23	y	0.00	0	24	0	24	n	0.18	6	28	6	28	y	0.00	0	24	0	24	n	0.06	2	34	2	34	y	0.00	0	15	0	15	n	0.00	0	24	0	24	n	0.09	2	21	2	21	y	0.00	0	14	0	14	n	0.08	2	24	2	24	y	0.00	0	13	0	13	n	0.15	3	17	3	17	y	ENSMUSG00000025264.13	Tsr2	chrX	protein_coding	TSR2 20S rRNA accumulation
known_NIR_20658	chrX	150353427;150355664	150355362;150356409	+	150353427	150356409	cassetteExon	ENSMUST00000112662.9	known	0.41	5.5	8	3;8	8	y	1.00	4.0	0	2;6	0	n	0.60	10.5	7	8;13	7	y	0.73	5.5	2	4;7	2	y	0.40	8.0	12	8;8	12	y	0.75	6.0	2	6;6	2	y	0.72	10.5	4	5;16	4	y	0.75	6.0	2	5;7	2	y	0.40	2.0	3	2;2	3	n	0.55	6.0	5	9;3	5	y	0.56	5.0	4	1;9	4	n	0.59	10.0	7	10;10	7	y	ENSMUSG00000041229.16	Phf8	chrX	protein_coding	PHD finger protein 8
known_NIR_20659	chrX	150586565	150586752	+	150586565	150589716	A3SS	ENSMUST00000153687.8	known	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.40	2	3	2	3	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.35	6	11	6	11	y	0.00	0	1	0	1	n	0.25	3	9	3	9	y	ENSMUSG00000025261.19	Huwe1	chrX	protein_coding	HECT, UBA and WWE domain containing 1
known_NIR_20660	chrX	150586565	150587442	+	150586565	150589716	A3SS	ENSMUST00000153687.8	known	0.33	2	4	2	4	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.12	2	14	2	14	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.15	2	11	2	11	y	0.00	0	1	0	1	n	0.00	0	9	0	9	n	ENSMUSG00000025261.19	Huwe1	chrX	protein_coding	HECT, UBA and WWE domain containing 1
known_NIR_20661	chrX	150586565	150587442	+	150586565;150586798	150586752;150587442	ES	ENSMUST00000139386.2	known	0.80	2	0.5	2	0;1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0.0	2	0;0	n	0.00	0	1.0	0	2;0	n	-	-	-	-	-	-	0.00	0	0.5	0	0;1	n	0.67	1	0.5	1	1;0	n	0.33	2	4.0	2	6;2	y	-	-	-	-	-	-	0.00	0	3.5	0	3;4	n	ENSMUSG00000025261.19	Huwe1	chrX	protein_coding	HECT, UBA and WWE domain containing 1
known_NIR_20662	chrX	150586565;150589403	150589268;150589716	+	150586565	150589716	cassetteExon	ENSMUST00000153687.8	known	0.53	4.5	4	2;7	4	y	0.25	1.0	3	0;2	3	n	0.37	7.0	12	2;12	12	y	0.35	6.5	12	2;11	12	y	0.26	5.0	14	3;7	14	y	0.33	1.5	3	0;3	3	n	0.59	8.5	6	0;17	6	n	0.33	1.5	3	0;3	3	n	0.33	1.5	3	0;3	3	n	0.42	8.0	11	3;13	11	y	0.75	3.0	1	4;2	1	n	0.38	5.5	9	1;10	9	n	ENSMUSG00000025261.19	Huwe1	chrX	protein_coding	HECT, UBA and WWE domain containing 1
known_NIR_20663	chrX	150618288	150623052	+	150618288;150619325	150619218;150623052	ES	ENSMUST00000153687.8	known	0.71	6	2.5	6	2;3	y	0.86	6	1.0	6	1;1	n	0.90	28	3.0	28	3;3	y	0.86	15	2.5	15	2;3	y	0.84	27	5.0	27	6;4	y	0.77	5	1.5	5	1;2	n	0.91	15	1.5	15	0;3	n	0.88	11	1.5	11	2;1	n	0.82	9	2.0	9	4;0	n	0.83	15	3.0	15	0;6	n	0.76	8	2.5	8	2;3	y	0.84	21	4.0	21	3;5	y	ENSMUSG00000025261.19	Huwe1	chrX	protein_coding	HECT, UBA and WWE domain containing 1
known_NIR_20664	chrX	150640909;150642684	150642451;150643163	+	150640909	150643163	cassetteExon	ENSMUST00000153687.8	known	0.75	12.0	4	16;8	4	y	0.56	5.0	4	5;5	4	y	0.66	19.5	10	25;14	10	y	0.96	22.0	1	26;18	1	n	1.00	22.0	0	25;19	0	n	1.00	10.0	0	17;3	0	n	0.94	16.0	1	11;21	1	n	0.93	13.5	1	13;14	1	n	1.00	9.5	0	13;6	0	n	0.81	17.5	4	19;16	4	y	0.82	9.0	2	14;4	2	y	0.71	15.0	6	16;14	6	y	ENSMUSG00000025261.19	Huwe1	chrX	protein_coding	HECT, UBA and WWE domain containing 1
known_NIR_20665	chrX	150962086	150976862	+	150962086	150963993	A3SS&ES	ENSMUST00000096275.5	known	0.22	2	7	2	7	n	0.58	7	5	7	5	y	0.40	6	9	6	9	y	0.29	5	12	5	12	y	0.25	4	12	4	12	y	0.25	2	6	2	6	n	0.17	3	15	3	15	y	0.67	4	2	4	2	n	0.40	4	6	4	6	y	0.43	6	8	6	8	y	0.29	2	5	2	5	n	0.86	6	1	6	1	n	ENSMUSG00000041115.17	Iqsec2	chrX	protein_coding	IQ motif and Sec7 domain 2
known_NIR_20666	chrX	150962086	150976862	+	150962086;150964088	150963993;150976862	ES	ENSMUST00000146835.8	known	0.19	2	8.5	2	7;10	y	0.48	7	7.5	7	5;10	y	0.44	6	7.5	6	9;6	y	0.34	5	9.5	5	12;7	y	0.21	4	15.5	4	12;19	y	0.29	2	5.0	2	6;4	y	0.15	3	17.5	3	15;20	y	0.67	4	2.0	4	2;2	n	0.53	4	3.5	4	6;1	n	0.43	6	8.0	6	8;8	y	0.24	2	6.5	2	5;8	y	0.71	6	2.5	6	1;4	n	ENSMUSG00000041115.17	Iqsec2	chrX	protein_coding	IQ motif and Sec7 domain 2
known_NIR_20667	chrX	150962086;150964088	150963993;150985904	+	150962086	150985904	cassetteExon	ENSMUST00000153356.2	known	0.54	3.5	3	7;0	3	n	1.00	2.5	0	5;0	0	n	0.73	5.5	2	9;2	2	y	0.75	6.0	2	12;0	2	n	0.76	6.5	2	12;1	2	n	1.00	3.0	0	6;0	0	n	0.79	7.5	2	15;0	2	n	1.00	1.0	0	2;0	0	n	1.00	3.0	0	6;0	0	n	0.67	4.0	2	8;0	2	n	1.00	2.5	0	5;0	0	n	1.00	0.5	0	1;0	0	n	ENSMUSG00000041115.17	Iqsec2	chrX	protein_coding	IQ motif and Sec7 domain 2
known_NIR_20668	chrX	151020706	151023022	+	151020706;151022748	151022626;151023022	ES	ENSMUST00000112584.8	known	0.11	3	23.5	3	24;23	y	0.00	0	21.0	0	20;22	n	0.06	4	61.0	4	68;54	y	0.00	0	32.0	0	32;32	n	0.03	2	56.0	2	64;48	y	0.11	5	39.0	5	29;49	y	0.00	0	41.5	0	50;33	n	0.02	1	45.5	1	40;51	n	0.00	0	32.0	0	39;25	n	0.02	1	46.5	1	43;50	n	0.06	2	29.5	2	28;31	y	0.02	1	40.5	1	43;38	n	ENSMUSG00000025332.15	Kdm5c	chrX	protein_coding	lysine (K)-specific demethylase 5C
known_NIR_20669	chrX	151053527	151054008	+	151053527;151053827	151053690;151054008	ES	ENSMUST00000112584.8	known	0.00	0	76.0	0	75;77	n	0.02	1	64.5	1	56;73	n	0.05	6	124.0	6	119;129	y	0.01	1	91.5	1	97;86	n	0.05	6	119.0	6	104;134	y	0.04	3	73.0	3	55;91	y	0.00	0	110.0	0	88;132	n	0.01	1	76.0	1	73;79	n	0.01	1	72.0	1	68;76	n	0.00	0	81.5	0	69;94	n	0.00	0	82.5	0	71;94	n	0.01	1	92.0	1	83;101	n	ENSMUSG00000025332.15	Kdm5c	chrX	protein_coding	lysine (K)-specific demethylase 5C
known_NIR_20670	chrX	151054925	151055071	+	151054934	151055071	A5SS	ENSMUST00000112584.8	known	0.60	63	42	63	42	y	0.72	51	20	51	20	y	0.61	79	50	79	50	y	0.69	61	28	61	28	y	0.67	77	38	77	38	y	0.77	47	14	47	14	y	0.69	88	39	88	39	y	0.77	55	16	55	16	y	0.80	52	13	52	13	y	0.76	85	27	85	27	y	0.73	64	24	64	24	y	0.66	77	39	77	39	y	ENSMUSG00000025332.15	Kdm5c	chrX	protein_coding	lysine (K)-specific demethylase 5C
known_NIR_20671	chrX	151122391	151122629	-	151122388	151122629	A3SS	ENSMUST00000149685.8	known	0.11	2	17	2	17	y	0.16	3	16	3	16	y	0.34	22	43	22	43	y	0.19	3	13	3	13	y	0.22	7	25	7	25	y	0.23	7	23	7	23	y	0.09	2	21	2	21	y	0.40	14	21	14	21	y	0.11	2	16	2	16	y	0.38	6	10	6	10	y	0.36	5	9	5	9	y	0.30	6	14	6	14	y	ENSMUSG00000041096.14	Tspyl2	chrX	protein_coding	TSPY-like 2
known_NIR_20672	chrX	151123389	151124536	-	151123376	151124536	A3SS	ENSMUST00000149685.8	known	0.62	16	10	16	10	y	0.71	20	8	20	8	y	0.62	38	23	38	23	y	0.57	4	3	4	3	n	0.66	19	10	19	10	y	0.35	14	26	14	26	y	0.50	6	6	6	6	y	0.54	14	12	14	12	y	0.72	13	5	13	5	y	0.33	4	8	4	8	y	0.67	6	3	6	3	n	0.43	9	12	9	12	y	ENSMUSG00000041096.14	Tspyl2	chrX	protein_coding	TSPY-like 2
known_NIR_20673	chrX	151406313	151440420	-	151406331	151440420	A3SS	ENSMUST00000101141.9	known	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.14	1	6	1	6	n	0.12	1	7	1	7	n	0.06	1	15	1	15	n	0.50	2	2	2	2	n	0.00	0	10	0	10	n	0.18	2	9	2	9	y	0.23	3	10	3	10	y	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	ENSMUSG00000045180.14	Shroom2	chrX	protein_coding	shroom family member 2
known_NIR_20674	chrX	152508837	152524036	+	152508837	152511858	3pMXE	ENSMUST00000149514.8	known	0.08	1	12	1	12	n	0.10	1	9	1	9	n	0.06	1	15	1	15	n	0.50	3	3	3	3	n	0.18	3	14	3	14	y	0.11	1	8	1	8	n	0.03	1	30	1	30	n	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.11	2	17	2	17	y	0.00	0	9	0	9	n	0.13	2	13	2	13	y	ENSMUSG00000086316.9	Nbdy	chrX	protein_coding	negative regulator of P-body association
known_NIR_20675	chrX	152508837	152524036	+	152508837;152511935	152511858;152524036	ES	ENSMUST00000140575.8	known	0.08	1	11.5	1	12;11	n	0.07	1	14.0	1	9;19	n	0.07	1	12.5	1	15;10	n	0.35	3	5.5	3	3;8	y	0.18	3	14.0	3	14;14	y	0.11	1	8.5	1	8;9	n	0.03	1	30.0	1	30;30	n	0.00	0	3.0	0	4;2	n	0.25	1	3.0	1	2;4	n	0.13	2	13.0	2	17;9	y	0.00	0	9.0	0	9;9	n	0.15	2	11.0	2	13;9	y	ENSMUSG00000086316.9	Nbdy	chrX	protein_coding	negative regulator of P-body association
known_NIR_20676	chrX	153996954	153997029	-	153996933	153997029	A3SS	ENSMUST00000026318.15	known	0.02	5	226	5	226	y	0.00	0	233	0	233	n	0.03	10	341	10	341	y	0.02	4	209	4	209	y	0.00	1	258	1	258	n	0.02	2	88	2	88	y	0.03	8	279	8	279	y	0.01	1	94	1	94	n	0.02	4	200	4	200	y	0.03	9	255	9	255	y	0.00	1	240	1	240	n	0.01	2	373	2	373	y	ENSMUSG00000025283.16	Sat1	chrX	protein_coding	spermidine/spermine N1-acetyl transferase 1
known_NIR_20677	chrX	153997130;153998226	153998117;153998597	-	153997130	153998597	cassetteExon	ENSMUST00000026318.15	known	0.04	8.0	193	12;4	193	y	0.02	4.0	180	3;5	180	y	0.02	6.0	320	10;2	320	y	0.03	4.5	144	4;5	144	y	0.01	2.5	205	4;1	205	n	0.02	1.5	94	1;2	94	n	0.03	6.0	206	8;4	206	y	0.04	3.5	82	5;2	82	y	0.01	2.0	159	0;4	159	n	0.01	3.5	251	3;4	251	y	0.03	5.5	172	3;8	172	y	0.01	2.5	315	2;3	315	y	ENSMUSG00000025283.16	Sat1	chrX	protein_coding	spermidine/spermine N1-acetyl transferase 1
known_NIR_20678	chrX	154045670	154052655	+	154045670	154046364	3pMXE	ENSMUST00000134662.2	known	1.00	7	0	7	0	n	1.00	6	0	6	0	n	1.00	15	0	15	0	n	1.00	15	0	15	0	n	1.00	8	0	8	0	n	1.00	3	0	3	0	n	0.88	14	2	14	2	y	0.89	8	1	8	1	n	1.00	3	0	3	0	n	1.00	10	0	10	0	n	1.00	8	0	8	0	n	1.00	7	0	7	0	n	ENSMUSG00000025287.16	Acot9	chrX	protein_coding	acyl-CoA thioesterase 9
known_NIR_20679	chrX	154120450	154121109	-	154117951	154121109	A3SS	ENSMUST00000026328.11	known	0.01	4	459	4	459	y	0.00	0	468	0	468	n	0.01	8	582	8	582	y	0.00	2	477	2	477	y	0.00	2	683	2	683	y	0.01	3	372	3	372	y	0.00	2	587	2	587	y	0.00	0	379	0	379	n	0.01	3	407	3	407	y	0.00	3	605	3	605	y	0.00	0	470	0	470	n	0.01	3	584	3	584	y	ENSMUSG00000025289.16	Prdx4	chrX	protein_coding	peroxiredoxin 4
known_NIR_20680	chrX	156352094	156355855	-	156344497	156355855	A3SS	ENSMUST00000058098.15	known	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.11	2	17	2	17	y	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.13	2	13	2	13	y	0.06	1	15	1	15	n	0.20	3	12	3	12	y	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.04	1	22	1	22	n	ENSMUSG00000046873.19	Mbtps2	chrX	protein_coding	membrane-bound transcription factor peptidase, site 2
known_NIR_20681	chrX	156374551	156381492	-	156374551;156376869	156376721;156381492	ES	ENSMUST00000058098.15	known	0.20	1	4.0	1	2;6	n	0.00	0	1.0	0	1;1	n	0.11	2	15.5	2	18;13	y	0.00	0	9.5	0	12;7	n	0.07	1	14.0	1	17;11	n	0.25	2	6.0	2	6;6	y	0.25	3	9.0	3	10;8	y	0.00	0	3.0	0	3;3	n	0.40	1	1.5	1	2;1	n	0.31	2	4.5	2	5;4	y	0.00	0	6.5	0	7;6	n	0.17	1	5.0	1	7;3	n	ENSMUSG00000046873.19	Mbtps2	chrX	protein_coding	membrane-bound transcription factor peptidase, site 2
known_NIR_20682	chrX	156504075	156535168	+	156504075;156534625	156534591;156535168	ES	ENSMUST00000038007.10	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.06	3	51.5	3	55;48	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041476.13	Smpx	chrX	protein_coding	small muscle protein, X-linked
known_NIR_20683	chrX	158039184	158068262	+	158062199	158068262	A5SS&ES	ENSMUST00000112493.8	known	0.00	0	3	0	3	n	0.40	2	3	2	3	n	0.40	6	9	6	9	y	0.00	0	3	0	3	n	0.56	5	4	5	4	n	0.50	2	2	2	2	n	0.56	5	4	5	4	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.50	2	2	2	2	n	0.00	0	2	0	2	n	0.25	2	6	2	6	n	ENSMUSG00000031309.16	Rps6ka3	chrX	protein_coding	ribosomal protein S6 kinase polypeptide 3
known_NIR_20684	chrX	158039184;158062199	158062163;158068262	+	158039184	158068262	cassetteExon	ENSMUST00000033671.13	known	1.00	1.5	0	0;3	0	n	0.43	1.5	2	0;3	2	n	0.43	4.5	6	0;9	6	n	1.00	1.5	0	0;3	0	n	0.29	2.0	5	0;4	5	n	0.33	1.0	2	0;2	2	n	0.38	3.0	5	2;4	5	y	0.00	0.0	1	0;0	1	n	1.00	0.5	0	0;1	0	n	0.33	1.0	2	0;2	2	n	1.00	1.0	0	0;2	0	n	0.60	3.0	2	0;6	2	n	ENSMUSG00000031309.16	Rps6ka3	chrX	protein_coding	ribosomal protein S6 kinase polypeptide 3
known_NIR_20685	chrX	158920248	158921252	-	158916228	158921252	A3SS	ENSMUST00000033662.9	known	0.00	0	82	0	82	n	0.00	0	41	0	41	n	0.02	2	107	2	107	y	0.00	0	114	0	114	n	0.00	0	109	0	109	n	0.00	0	62	0	62	n	0.00	0	158	0	158	n	0.00	0	59	0	59	n	0.00	0	89	0	89	n	0.00	0	100	0	100	n	0.00	0	93	0	93	n	0.00	0	104	0	104	n	ENSMUSG00000031299.11	Pdha1	chrX	protein_coding	pyruvate dehydrogenase E1 alpha 1
known_NIR_20686	chrX	159369950	159371961	+	159369945	159371961	A5SS	ENSMUST00000112377.8	known	0.09	5	49	5	49	y	0.01	1	68	1	68	n	0.25	5	15	5	15	y	0.00	0	40	0	40	n	0.03	3	92	3	92	y	0.00	0	29	0	29	n	0.03	2	76	2	76	y	0.07	3	39	3	39	y	0.00	0	62	0	62	n	0.04	4	101	4	101	y	0.03	2	69	2	69	y	0.07	5	69	5	69	y	ENSMUSG00000031295.14	Phka2	chrX	protein_coding	phosphorylase kinase alpha 2
known_NIR_20687	chrX	159372014	159373162	+	159372014	159373164	A3SS	ENSMUST00000112377.8	known	0.00	0	63	0	63	n	0.00	0	60	0	60	n	0.00	0	22	0	22	n	0.00	0	49	0	49	n	0.00	0	105	0	105	n	0.00	0	19	0	19	n	0.00	0	84	0	84	n	0.00	0	35	0	35	n	0.00	0	64	0	64	n	0.04	4	92	4	92	y	0.00	0	69	0	69	n	0.00	0	73	0	73	n	ENSMUSG00000031295.14	Phka2	chrX	protein_coding	phosphorylase kinase alpha 2
known_NIR_20688	chrX	159373364	159381464	+	159373364	159373935	3pMXE	ENSMUST00000112377.8	known	0.03	1	34	1	34	n	0.00	0	56	0	56	n	0.00	0	23	0	23	n	0.02	1	45	1	45	n	0.00	0	71	0	71	n	0.00	0	22	0	22	n	0.02	1	61	1	61	n	0.00	0	27	0	27	n	0.04	2	46	2	46	y	0.00	0	78	0	78	n	0.02	1	59	1	59	n	0.02	1	49	1	49	n	ENSMUSG00000031295.14	Phka2	chrX	protein_coding	phosphorylase kinase alpha 2
known_NIR_20689	chrX	160500858	160560525	+	160500263	160560525	A5SS	ENSMUST00000112338.2	known	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	1.00	1	0	1	0	n	0.44	4	5	4	5	n	1.00	3	0	3	0	n	-	-	-	-	-	-	0.40	2	3	2	3	n	1.00	3	0	3	0	n	0.36	4	7	4	7	y	ENSMUSG00000043518.8	Rai2	chrX	protein_coding	retinoic acid induced 2
known_NIR_20690	chrX	161297347	161301325	-	161297344	161301325	A3SS	ENSMUST00000154424.8	known	0.83	5	1	5	1	n	0.88	7	1	7	1	n	0.95	20	1	20	1	n	0.83	20	4	20	4	y	0.71	20	8	20	8	y	0.73	11	4	11	4	y	0.96	23	1	23	1	n	0.71	10	4	10	4	y	0.94	16	1	16	1	n	0.83	19	4	19	4	y	1.00	8	0	8	0	n	0.73	11	4	11	4	y	ENSMUSG00000040855.16	Reps2	chrX	protein_coding	RALBP1 associated Eps domain containing protein 2
known_NIR_20691	chrX	161335665	161337793	-	161335662	161337793	A3SS	ENSMUST00000154424.8	known	0.25	2	6	2	6	n	0.40	2	3	2	3	n	0.21	8	31	8	31	y	0.20	3	12	3	12	y	0.24	7	22	7	22	y	0.07	1	14	1	14	n	0.11	3	24	3	24	y	0.22	5	18	5	18	y	0.20	2	8	2	8	y	0.12	3	23	3	23	y	0.25	4	12	4	12	y	0.14	2	12	2	12	y	ENSMUSG00000040855.16	Reps2	chrX	protein_coding	RALBP1 associated Eps domain containing protein 2
known_NIR_20692	chrX	161348347	161348559	-	161348347	161426270	A5SS	ENSMUST00000101102.2	known	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	18	0	18	n	0.07	1	13	1	13	n	0.06	1	16	1	16	n	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.07	1	13	1	13	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.17	1	5	1	5	n	0.12	2	15	2	15	y	ENSMUSG00000040855.16	Reps2	chrX	protein_coding	RALBP1 associated Eps domain containing protein 2
known_NIR_20693	chrX	161544159	161544571	+	161543703	161544571	A5SS	ENSMUST00000033720.12	known	0.02	2	88	2	88	y	0.00	0	62	0	62	n	0.01	1	149	1	149	n	0.03	3	105	3	105	y	0.01	1	117	1	117	n	0.02	1	52	1	52	n	0.01	1	79	1	79	n	0.03	2	68	2	68	y	0.00	0	61	0	61	n	0.01	1	137	1	137	n	0.01	1	76	1	76	n	0.00	0	122	0	122	n	ENSMUSG00000031353.14	Rbbp7	chrX	protein_coding	retinoblastoma binding protein 7, chromatin remodeling factor
known_NIR_20694	chrX	161551993	161552787	+	161551993	161552760	A3SS	ENSMUST00000033720.12	known	0.01	1	104	1	104	n	0.03	2	76	2	76	y	0.01	2	164	2	164	y	0.00	0	150	0	150	n	0.01	2	134	2	134	y	0.05	5	93	5	93	y	0.03	4	138	4	138	y	0.02	2	90	2	90	y	0.02	2	113	2	113	y	0.03	4	143	4	143	y	0.01	1	122	1	122	n	0.00	0	160	0	160	n	ENSMUSG00000031353.14	Rbbp7	chrX	protein_coding	retinoblastoma binding protein 7, chromatin remodeling factor
known_NIR_20695	chrX	161684910	161686430	+	161684743	161686430	A5SS	ENSMUST00000033727.14	known	0.33	1	2	1	2	n	0.20	1	4	1	4	n	0.50	4	4	4	4	n	0.17	2	10	2	10	y	0.58	7	5	7	5	y	1.00	3	0	3	0	n	0.30	3	7	3	7	y	0.50	2	2	2	2	n	1.00	1	0	1	0	n	0.00	0	8	0	8	n	0.80	4	1	4	1	n	0.60	3	2	3	2	n	ENSMUSG00000031360.15	Ctps2	chrX	protein_coding	cytidine 5'-triphosphate synthase 2
known_NIR_20696	chrX	161685376	161686430	+	161684743	161686430	A5SS	ENSMUST00000033727.14	known	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.12	1	7	1	7	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.33	4	8	4	8	y	0.50	1	1	1	1	n	0.00	0	2	0	2	n	ENSMUSG00000031360.15	Ctps2	chrX	protein_coding	cytidine 5'-triphosphate synthase 2
known_NIR_20697	chrX	161693175	161704195	+	161693175;161696304	161696204;161704195	ES	ENSMUST00000101095.9	known	0.17	1	5.0	1	6;4	n	0.00	0	5.5	0	3;8	n	0.00	0	21.0	0	24;18	n	0.00	0	18.5	0	18;19	n	0.00	0	17.0	0	23;11	n	0.00	0	7.0	0	5;9	n	0.00	0	29.5	0	21;38	n	0.00	0	11.5	0	12;11	n	0.00	0	17.5	0	14;21	n	0.00	0	17.0	0	18;16	n	0.00	0	8.0	0	9;7	n	0.07	2	27.5	2	29;26	y	ENSMUSG00000031360.15	Ctps2	chrX	protein_coding	cytidine 5'-triphosphate synthase 2
known_NIR_20698	chrX	162700839;162703996	162703902;162715129	+	162700839	162715129	cassetteExon	ENSMUST00000033734.14	known	0.00	0.0	3	0;0	3	n	0.00	0.0	5	0;0	5	n	0.00	0.0	5	0;0	5	n	0.00	0.0	4	0;0	4	n	0.00	0.0	3	0;0	3	n	0.00	0.0	3	0;0	3	n	0.46	6.0	7	4;8	7	y	0.00	0.0	6	0;0	6	n	0.00	0.0	2	0;0	2	n	-	-	-	-	-	-	0.00	0.0	6	0;0	6	n	0.00	0.0	3	0;0	3	n	ENSMUSG00000031367.16	Ap1s2	chrX	protein_coding	adaptor-related protein complex 1, sigma 2 subunit
known_NIR_20699	chrX	162741415	162741584	-	162741415	162741523	5pMXE	ENSMUST00000147928.8	known	1.00	2	0	2	0	n	0.75	3	1	3	1	n	0.70	7	3	7	3	y	0.50	2	2	2	2	n	0.67	4	2	4	2	n	-	-	-	-	-	-	0.67	2	1	2	1	n	0.75	3	1	3	1	n	1.00	5	0	5	0	n	1.00	4	0	4	0	n	0.38	3	5	3	5	n	0.83	5	1	5	1	n	ENSMUSG00000031370.13	Zrsr2	chrX	protein_coding	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2
known_NIR_20700	chrX	163205660	163210928	+	163206359	163210928	A5SS	ENSMUST00000033754.15	known	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.00	0	22	0	22	n	0.00	0	6	0	6	n	0.36	5	9	5	9	y	0.14	1	6	1	6	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.22	2	7	2	7	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.09	1	10	1	10	n	ENSMUSG00000031381.17	Piga	chrX	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class A
known_NIR_20701	chrX	163206359	163210928	+	163205982	163210928	A5SS	ENSMUST00000112257.10	known	0.33	3	6	3	6	n	1.00	1	0	1	0	n	0.71	22	9	22	9	y	1.00	6	0	6	0	n	0.69	9	4	9	4	y	0.75	6	2	6	2	n	0.92	11	1	11	1	n	0.80	12	3	12	3	y	1.00	7	0	7	0	n	1.00	4	0	4	0	n	0.83	5	1	5	1	n	0.77	10	3	10	3	y	ENSMUSG00000031381.17	Piga	chrX	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class A
known_NIR_20702	chrX	163206668	163210928	+	163205982	163210928	A5SS	ENSMUST00000112257.10	known	0.00	0	6	0	6	n	1.00	1	0	1	0	n	0.18	2	9	2	9	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000031381.17	Piga	chrX	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class A
known_NIR_20703	chrX	163206668	163210928	+	163206359	163210928	A5SS	ENSMUST00000033754.15	known	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.08	2	22	2	22	y	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.08	1	12	1	12	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	ENSMUSG00000031381.17	Piga	chrX	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class A
known_NIR_20704	chrX	163220221	163228725	+	163221215	163228725	5pMXE	ENSMUST00000033755.6	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.40	8	12	8	12	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031382.15	Asb11	chrX	protein_coding	ankyrin repeat and SOCS box-containing 11
known_NIR_20705	chrX	163720299	163722639	-	163720080	163722639	A3SS	ENSMUST00000112248.9	known	0.22	11	40	11	40	y	0.23	6	20	6	20	y	0.25	8	24	8	24	y	0.07	2	28	2	28	y	0.21	12	44	12	44	y	0.19	4	17	4	17	y	0.30	12	28	12	28	y	0.25	9	27	9	27	y	0.28	8	21	8	21	y	0.11	6	50	6	50	y	0.17	8	38	8	38	y	0.12	6	46	6	46	y	ENSMUSG00000061778.11	Mospd2	chrX	protein_coding	motile sperm domain containing 2
known_NIR_20706	chrX	163721688	163722639	-	163720080	163722639	A3SS	ENSMUST00000112248.9	known	0.20	10	40	10	40	y	0.35	11	20	11	20	y	0.49	23	24	23	24	y	0.42	20	28	20	28	y	0.40	29	44	29	44	y	0.54	20	17	20	17	y	0.56	36	28	36	28	y	0.33	13	27	13	27	y	0.38	13	21	13	21	y	0.28	19	50	19	50	y	0.21	10	38	10	38	y	0.31	21	46	21	46	y	ENSMUSG00000061778.11	Mospd2	chrX	protein_coding	motile sperm domain containing 2
known_NIR_20707	chrX	163721688	163722639	-	163720299	163722639	A3SS	ENSMUST00000112247.9	known	0.48	10	11	10	11	y	0.65	11	6	11	6	y	0.74	23	8	23	8	y	0.91	20	2	20	2	y	0.71	29	12	29	12	y	0.83	20	4	20	4	y	0.75	36	12	36	12	y	0.59	13	9	13	9	y	0.62	13	8	13	8	y	0.76	19	6	19	6	y	0.56	10	8	10	8	y	0.78	21	6	21	6	y	ENSMUSG00000061778.11	Mospd2	chrX	protein_coding	motile sperm domain containing 2
known_NIR_20708	chrX	165232899	165235133	+	165233710	165235133	A5SS&ES	ENSMUST00000116495.8	known	0.00	0	27	0	27	n	0.00	0	15	0	15	n	0.03	1	39	1	39	n	0.04	1	23	1	23	n	0.00	0	28	0	28	n	0.00	0	14	0	14	n	0.00	0	31	0	31	n	0.00	0	24	0	24	n	0.00	0	23	0	23	n	0.00	0	27	0	27	n	0.12	3	23	3	23	y	0.08	2	22	2	22	y	ENSMUSG00000079317.11	Trappc2	chrX	protein_coding	trafficking protein particle complex 2
known_NIR_20709	chrX	165245338;165248118	165248090;165262536	-	165245338	165262536	cassetteExon	ENSMUST00000112091.9	known	0.01	1.5	108	2;1	108	n	0.01	0.5	67	1;0	67	n	0.03	4.0	141	5;3	141	y	0.01	1.5	138	2;1	138	n	0.02	2.5	145	3;2	145	y	0.00	0.0	115	0;0	115	n	0.01	1.0	166	1;1	166	n	0.00	0.5	102	1;0	102	n	0.02	2.5	128	3;2	128	y	0.00	0.5	150	1;0	150	n	0.02	2.0	107	2;2	107	y	0.01	1.0	189	1;1	189	n	ENSMUSG00000079316.11	Rab9	chrX	protein_coding	RAB9, member RAS oncogene family
known_NIR_20710	chrX	165991047	165992004	-	165991047	165992102	A5SS	ENSMUST00000112172.4	known	0.00	3	848	3	848	y	0.00	0	747	0	747	n	0.00	0	769	0	769	n	0.00	0	430	0	430	n	0.00	4	1064	4	1064	y	0.01	2	338	2	338	y	0.00	1	1006	1	1006	n	0.00	0	397	0	397	n	0.00	0	389	0	389	n	0.00	0	514	0	514	n	0.00	2	563	2	563	y	0.00	0	509	0	509	n	ENSMUSG00000049775.17	Tmsb4x	chrX	protein_coding	thymosin, beta 4, X chromosome
known_NIR_20711	chrX	16637258	16673774	-	16637258	16683469	A5SS	ENSMUST00000040820.13	known	0.00	0	110	0	110	n	0.00	0	97	0	97	n	0.02	1	47	1	47	n	0.01	2	249	2	249	y	0.02	3	159	3	159	y	0.12	4	29	4	29	y	0.01	1	132	1	132	n	0.03	2	69	2	69	y	0.00	0	141	0	141	n	0.02	4	217	4	217	y	0.01	1	162	1	162	n	0.02	4	232	4	232	y	ENSMUSG00000040147.15	Maob	chrX	protein_coding	monoamine oxidase B
known_NIR_20712	chrX	16681685	16683469	-	16637258	16683469	A3SS	ENSMUST00000040820.13	known	0.03	3	110	3	110	y	0.00	0	97	0	97	n	0.02	1	47	1	47	n	0.01	2	249	2	249	y	0.00	0	159	0	159	n	0.00	0	29	0	29	n	0.01	1	132	1	132	n	0.00	0	69	0	69	n	0.00	0	141	0	141	n	0.00	1	217	1	217	n	0.00	0	162	0	162	n	0.00	0	232	0	232	n	ENSMUSG00000040147.15	Maob	chrX	protein_coding	monoamine oxidase B
known_NIR_20713	chrX	167454886	167456724	-	167454886	167455259	5pMXE	ENSMUST00000129860.2	known	0.79	44	12	44	12	y	0.71	29	12	29	12	y	0.81	54	13	54	13	y	0.80	52	13	52	13	y	0.72	62	24	62	24	y	0.78	31	9	31	9	y	0.89	62	8	62	8	y	0.80	36	9	36	9	y	0.69	25	11	25	11	y	0.83	60	12	60	12	y	0.84	37	7	37	7	y	0.69	50	22	50	22	y	ENSMUSG00000031358.18	Msl3	chrX	protein_coding	MSL complex subunit 3
known_NIR_20714	chrX	167454886	167456724	-	167454886;167455341	167455259;167456724	ES	ENSMUST00000033725.16	known	0.86	44	7.0	44	12;2	y	0.74	29	10.0	29	12;8	y	0.83	54	11.0	54	13;9	y	0.83	52	11.0	52	13;9	y	0.77	62	19.0	62	24;14	y	0.85	31	5.5	31	9;2	y	0.85	62	11.0	62	8;14	y	0.82	36	8.0	36	9;7	y	0.75	25	8.5	25	11;6	y	0.84	60	11.5	60	12;11	y	0.85	37	6.5	37	7;6	y	0.79	50	13.5	50	22;5	y	ENSMUSG00000031358.18	Msl3	chrX	protein_coding	MSL complex subunit 3
known_NIR_20715	chrX	168102586	168102972	-	168102586	168103111	A5SS	ENSMUST00000033717.9	known	0.41	7	10	7	10	y	0.33	2	4	2	4	n	0.59	22	15	22	15	y	0.39	7	11	7	11	y	0.65	11	6	11	6	y	0.38	3	5	3	5	n	0.60	6	4	6	4	y	0.54	7	6	7	6	y	0.62	8	5	8	5	y	0.69	11	5	11	5	y	0.69	9	4	9	4	y	0.47	7	8	7	8	y	ENSMUSG00000031352.11	Hccs	chrX	protein_coding	holocytochrome c synthetase
known_NIR_20716	chrX	168102586	168102972	-	168102586	168103171	A5SS	ENSMUST00000154638.9	known	1.00	7	0	7	0	n	0.67	2	1	2	1	n	0.92	22	2	22	2	y	1.00	7	0	7	0	n	0.85	11	2	11	2	y	0.60	3	2	3	2	n	1.00	6	0	6	0	n	1.00	7	0	7	0	n	0.89	8	1	8	1	n	0.85	11	2	11	2	y	1.00	9	0	9	0	n	0.88	7	1	7	1	n	ENSMUSG00000031352.11	Hccs	chrX	protein_coding	holocytochrome c synthetase
known_NIR_20717	chrX	168102586	168103111	-	168102586	168103171	A5SS	ENSMUST00000154638.9	known	1.00	10	0	10	0	n	0.80	4	1	4	1	n	0.88	15	2	15	2	y	1.00	11	0	11	0	n	0.75	6	2	6	2	n	0.71	5	2	5	2	n	1.00	4	0	4	0	n	1.00	6	0	6	0	n	0.83	5	1	5	1	n	0.71	5	2	5	2	n	1.00	4	0	4	0	n	0.89	8	1	8	1	n	ENSMUSG00000031352.11	Hccs	chrX	protein_coding	holocytochrome c synthetase
known_NIR_20718	chrX	168710551	168749059	+	168710665	168749059	A5SS	ENSMUST00000112104.8	known	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.17	4	20	4	20	y	0.00	0	2	0	2	n	0.17	2	10	2	10	y	0.43	6	8	6	8	y	0.00	0	10	0	10	n	0.23	3	10	3	10	y	0.00	0	1	0	1	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.25	1	3	1	3	n	ENSMUSG00000035299.17	Mid1	chrX	protein_coding	midline 1
known_NIR_20719	chrX	168768138	168768932	+	168768138	168768893	A3SS	ENSMUST00000112107.8	known	0.67	2	1	2	1	n	0.88	14	2	14	2	y	0.77	23	7	23	7	y	0.88	7	1	7	1	n	0.89	17	2	17	2	y	0.82	14	3	14	3	y	0.91	20	2	20	2	y	0.83	10	2	10	2	y	1.00	2	0	2	0	n	0.40	2	3	2	3	n	-	-	-	-	-	-	1.00	4	0	4	0	n	ENSMUSG00000035299.17	Mid1	chrX	protein_coding	midline 1
known_NIR_20720	chrX	17424250	17434272	-	17424250;17425048	17424920;17434272	ES	ENSMUST00000026016.13	known	0.00	0	35.0	0	43;27	n	0.00	0	31.0	0	31;31	n	0.00	0	58.0	0	58;58	n	0.00	0	30.0	0	22;38	n	0.03	2	60.5	2	52;69	y	0.03	1	33.0	1	33;33	n	0.02	1	47.0	1	40;54	n	0.00	0	29.0	0	28;30	n	0.00	0	35.5	0	34;37	n	0.00	0	36.5	0	32;41	n	0.00	0	34.0	0	31;37	n	0.00	0	39.0	0	36;42	n	ENSMUSG00000025040.14	Fundc1	chrX	protein_coding	FUN14 domain containing 1
known_NIR_20721	chrX	18112655	18114509	+	18112655;18113348	18113214;18114509	ES	ENSMUST00000044484.13	known	0.00	0	1.5	0	2;1	n	0.29	1	2.5	1	4;1	n	0.00	0	7.5	0	11;4	n	0.00	0	5.5	0	6;5	n	0.10	1	9.0	1	13;5	n	0.00	0	2.5	0	4;1	n	0.24	2	6.5	2	3;10	y	0.13	1	6.5	1	6;7	n	0.25	1	3.0	1	3;3	n	0.00	0	3.5	0	2;5	n	0.00	0	4.0	0	5;3	n	0.13	1	6.5	1	7;6	n	ENSMUSG00000037369.18	Kdm6a	chrX	protein_coding	lysine (K)-specific demethylase 6A
known_NIR_20722	chrX	18112655;18113348	18113214;18113806	+	18112655	18113806	cassetteExon	ENSMUST00000224255.2	known	1.00	1.5	0	2;1	0	n	0.67	2.0	1	4;0	1	n	0.70	7.0	3	11;3	3	y	1.00	3.0	0	6;0	0	n	0.71	7.5	3	13;2	3	y	0.56	2.5	2	4;1	2	n	0.38	2.5	4	3;2	4	n	0.82	4.5	1	6;3	1	n	0.40	2.0	3	3;1	3	n	0.78	3.5	1	2;5	1	n	1.00	2.5	0	5;0	0	n	0.83	5.0	1	7;3	1	n	ENSMUSG00000037369.18	Kdm6a	chrX	protein_coding	lysine (K)-specific demethylase 6A
known_NIR_20723	chrX	18112655;18113961	18113806;18114509	+	18112655;18113348	18113214;18114509	MXE	ENSMUST00000044484.13	known	0.40	1.0	1.5	0;2	2;1	n	0.50	2.5	2.5	1;4	4;1	n	0.35	4.0	7.5	3;5	11;4	y	0.31	2.5	5.5	0;5	6;5	n	0.33	4.5	9.0	3;6	13;5	y	0.62	4.0	2.5	2;6	4;1	n	0.35	3.5	6.5	4;3	3;10	y	0.32	3.0	6.5	1;5	6;7	n	0.60	4.5	3.0	3;6	3;3	y	0.42	2.5	3.5	1;4	2;5	n	0.33	2.0	4.0	0;4	5;3	n	0.19	1.5	6.5	1;2	7;6	n	ENSMUSG00000037369.18	Kdm6a	chrX	protein_coding	lysine (K)-specific demethylase 6A
known_NIR_20724	chrX	18113348	18114509	+	18113961	18114509	5pMXE	ENSMUST00000226046.2	known	0.33	1	2	1	2	n	0.20	1	4	1	4	n	0.44	4	5	4	5	n	0.50	5	5	5	5	y	0.45	5	6	5	6	y	0.14	1	6	1	6	n	0.77	10	3	10	3	y	0.58	7	5	7	5	y	0.33	3	6	3	6	n	0.56	5	4	5	4	n	0.43	3	4	3	4	n	0.75	6	2	6	2	n	ENSMUSG00000037369.18	Kdm6a	chrX	protein_coding	lysine (K)-specific demethylase 6A
known_NIR_20725	chrX	18113348;18113961	18113806;18114509	+	18113348	18114509	cassetteExon	ENSMUST00000044484.13	known	0.60	1.5	1	1;2	1	n	0.67	2.0	1	0;4	1	n	0.50	4.0	4	3;5	4	y	0.33	2.5	5	0;5	5	n	0.44	4.0	5	2;6	5	y	0.78	3.5	1	1;6	1	n	0.20	2.5	10	2;3	10	y	0.36	4.0	7	3;5	7	y	0.54	3.5	3	1;6	3	n	0.47	4.5	5	5;4	5	y	0.40	2.0	3	0;4	3	n	0.29	2.5	6	3;2	6	y	ENSMUSG00000037369.18	Kdm6a	chrX	protein_coding	lysine (K)-specific demethylase 6A
known_NIR_20726	chrX	18143802	18144865	+	18143785	18144865	A5SS	ENSMUST00000044484.13	known	0.02	1	42	1	42	n	0.05	2	35	2	35	y	0.06	3	50	3	50	y	0.08	2	24	2	24	y	0.17	5	25	5	25	y	0.08	3	34	3	34	y	0.00	0	40	0	40	n	0.23	5	17	5	17	y	0.00	0	21	0	21	n	0.06	2	32	2	32	y	0.10	3	28	3	28	y	0.06	3	44	3	44	y	ENSMUSG00000037369.18	Kdm6a	chrX	protein_coding	lysine (K)-specific demethylase 6A
known_NIR_20727	chrX	20263545	20269454	+	20263545	20263891	3pMXE	ENSMUST00000033372.13	known	0.17	2	10	2	10	y	0.00	0	12	0	12	n	0.00	0	35	0	35	n	0.00	0	20	0	20	n	0.00	0	33	0	33	n	0.00	0	15	0	15	n	0.00	0	20	0	20	n	0.00	0	21	0	21	n	0.00	0	16	0	16	n	0.00	0	23	0	23	n	0.00	0	11	0	11	n	0.00	0	21	0	21	n	ENSMUSG00000060090.17	Rp2	chrX	protein_coding	retinitis pigmentosa 2 homolog
known_NIR_20728	chrX	20484290	20486213	+	20484321	20486213	A5SS	ENSMUST00000115375.8	known	1.00	23	0	23	0	n	1.00	19	0	19	0	n	1.00	21	0	21	0	n	1.00	31	0	31	0	n	1.00	43	0	43	0	n	1.00	17	0	17	0	n	1.00	24	0	24	0	n	0.92	24	2	24	2	y	1.00	19	0	19	0	n	1.00	36	0	36	0	n	1.00	21	0	21	0	n	1.00	27	0	27	0	n	ENSMUSG00000031060.17	Rbm10	chrX	protein_coding	RNA binding motif protein 10
known_NIR_20729	chrX	20502153	20505672	+	20502153;20503895	20503665;20505672	ES	ENSMUST00000115375.8	known	0.90	22	2.5	22	2;3	y	0.82	18	4.0	18	0;8	n	0.87	23	3.5	23	3;4	y	0.68	17	8.0	17	8;8	y	0.81	29	7.0	29	5;9	y	0.55	11	9.0	11	9;9	y	0.78	19	5.5	19	7;4	y	0.67	20	10.0	20	12;8	y	0.76	13	4.0	13	7;1	n	0.70	21	9.0	21	7;11	y	0.67	9	4.5	9	4;5	y	0.73	18	6.5	18	5;8	y	ENSMUSG00000031060.17	Rbm10	chrX	protein_coding	RNA binding motif protein 10
known_NIR_20730	chrX	20511836	20512008	+	20511833	20512008	A5SS	ENSMUST00000115375.8	known	0.35	11	20	11	20	y	0.44	15	19	15	19	y	0.53	18	16	18	16	y	0.51	20	19	20	19	y	0.38	20	33	20	33	y	0.69	11	5	11	5	y	0.44	20	25	20	25	y	0.18	4	18	4	18	y	0.32	7	15	7	15	y	0.38	15	24	15	24	y	0.50	10	10	10	10	y	0.41	14	20	14	20	y	ENSMUSG00000031060.17	Rbm10	chrX	protein_coding	RNA binding motif protein 10
known_NIR_20731	chrX	20529364	20534688	+	20524765	20534688	A5SS	ENSMUST00000089217.11	known	0.90	118	13	118	13	y	0.92	70	6	70	6	y	0.92	182	16	182	16	y	0.93	143	10	143	10	y	0.95	169	9	169	9	y	0.92	107	9	107	9	y	0.95	132	7	132	7	y	0.92	115	10	115	10	y	0.94	92	6	92	6	y	0.96	173	8	173	8	y	0.85	84	15	84	15	y	0.92	144	12	144	12	y	ENSMUSG00000001924.16	Uba1	chrX	protein_coding	ubiquitin-like modifier activating enzyme 1
known_NIR_20732	chrX	20529364	20534688	+	20525535	20534688	A5SS	ENSMUST00000152235.8	known	0.98	118	2	118	2	y	1.00	70	0	70	0	n	0.94	182	11	182	11	y	0.96	143	6	143	6	y	0.98	169	3	169	3	y	0.93	107	8	107	8	y	0.96	132	6	132	6	y	0.96	115	5	115	5	y	1.00	92	0	92	0	n	0.98	173	3	173	3	y	0.97	84	3	84	3	y	0.98	144	3	144	3	y	ENSMUSG00000001924.16	Uba1	chrX	protein_coding	ubiquitin-like modifier activating enzyme 1
known_NIR_20733	chrX	20555045	20559563	+	20554600	20559563	A5SS	ENSMUST00000115364.8	known	1.00	26	0	26	0	n	0.87	13	2	13	2	y	0.89	33	4	33	4	y	1.00	25	0	25	0	n	0.95	39	2	39	2	y	0.91	30	3	30	3	y	0.85	22	4	22	4	y	1.00	20	0	20	0	n	1.00	23	0	23	0	n	0.93	14	1	14	1	n	0.95	20	1	20	1	n	0.97	29	1	29	1	n	ENSMUSG00000031065.15	Cdk16	chrX	protein_coding	cyclin-dependent kinase 16
known_NIR_20734	chrX	20559770	20560277	+	20559770	20560146	A3SS	ENSMUST00000115364.8	known	0.97	62	2	62	2	y	0.95	39	2	39	2	y	0.96	78	3	78	3	y	0.95	58	3	58	3	y	0.93	70	5	70	5	y	0.93	39	3	39	3	y	0.98	98	2	98	2	y	1.00	62	0	62	0	n	1.00	40	0	40	0	n	0.96	54	2	54	2	y	0.98	43	1	43	1	n	0.97	36	1	36	1	n	ENSMUSG00000031065.15	Cdk16	chrX	protein_coding	cyclin-dependent kinase 16
known_NIR_20735	chrX	20564767	20565469	+	20564767	20564848	A3SS	ENSMUST00000115364.8	known	0.04	3	67	3	67	y	0.00	0	70	0	70	n	0.00	0	102	0	102	n	0.00	0	65	0	65	n	0.04	4	95	4	95	y	0.06	4	63	4	63	y	0.03	4	124	4	124	y	0.00	0	41	0	41	n	0.05	3	57	3	57	y	0.07	6	74	6	74	y	0.05	4	76	4	76	y	0.06	4	59	4	59	y	ENSMUSG00000031065.15	Cdk16	chrX	protein_coding	cyclin-dependent kinase 16
known_NIR_20736	chrX	20714858;20715395	20715351;20716166	+	20714858	20716166	cassetteExon	ENSMUST00000001155.11	known	0.05	2.0	41	0;4	41	n	0.00	0.0	37	0;0	37	n	0.06	4.5	75	0;9	75	n	0.00	0.0	59	0;0	59	n	0.04	3.0	71	0;6	71	n	0.00	0.0	47	0;0	47	n	0.02	1.5	89	0;3	89	n	0.00	0.0	51	0;0	51	n	0.12	6.5	48	2;11	48	y	0.04	2.5	65	0;5	65	n	0.00	0.0	46	0;0	46	n	0.00	0.0	59	0;0	59	n	ENSMUSG00000001127.13	Araf	chrX	protein_coding	Araf proto-oncogene, serine/threonine kinase
known_NIR_20737	chrX	20720354	20720501	+	20720354	20723851	A3SS	ENSMUST00000001155.11	known	0.00	0	119	0	119	n	0.00	0	105	0	105	n	0.00	0	146	0	146	n	0.00	0	125	0	125	n	0.00	0	154	0	154	n	0.00	0	82	0	82	n	0.00	0	147	0	147	n	0.00	0	86	0	86	n	0.00	0	68	0	68	n	0.01	2	144	2	144	y	0.00	0	112	0	112	n	0.00	0	98	0	98	n	ENSMUSG00000001127.13	Araf	chrX	protein_coding	Araf proto-oncogene, serine/threonine kinase
known_NIR_20738	chrX	20720354	20723851	+	20720354;20723761	20723650;20723851	ES	ENSMUST00000136451.8	known	0.97	119	4.0	119	0;8	n	1.00	105	0.5	105	0;1	n	0.97	146	4.5	146	2;7	y	0.98	125	2.0	125	0;4	n	0.98	154	3.5	154	0;7	n	0.97	82	2.5	82	0;5	n	0.98	147	2.5	147	0;5	n	0.98	86	1.5	86	0;3	n	0.95	68	3.5	68	0;7	n	0.98	144	3.0	144	0;6	n	0.97	112	3.5	112	0;7	n	0.99	98	0.5	98	0;1	n	ENSMUSG00000001127.13	Araf	chrX	protein_coding	Araf proto-oncogene, serine/threonine kinase
known_NIR_20739	chrX	20724751	20725005	+	20724751	20724981	A3SS	ENSMUST00000136451.8	known	0.01	2	171	2	171	y	0.03	6	170	6	170	y	0.02	4	228	4	228	y	0.01	2	142	2	142	y	0.01	2	216	2	216	y	0.05	6	111	6	111	y	0.04	9	225	9	225	y	0.04	5	107	5	107	y	0.01	2	147	2	147	y	0.00	0	183	0	183	n	0.02	3	176	3	176	y	0.04	7	173	7	173	y	ENSMUSG00000001127.13	Araf	chrX	protein_coding	Araf proto-oncogene, serine/threonine kinase
known_NIR_20740	chrX	20736563	20737270	+	20736563	20737273	A3SS	ENSMUST00000115342.10	known	0.50	3	3	3	3	n	1.00	2	0	2	0	n	0.31	29	66	29	66	y	-	-	-	-	-	-	0.00	0	9	0	9	n	0.26	5	14	5	14	y	0.33	13	26	13	26	y	0.46	6	7	6	7	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000001131.12	Timp1	chrX	protein_coding	tissue inhibitor of metalloproteinase 1
known_NIR_20741	chrX	20791998	20793420	-	20791998	20793520	A5SS	ENSMUST00000001156.8	known	0.02	2	131	2	131	y	0.02	4	187	4	187	y	0.02	2	83	2	83	y	0.00	0	85	0	85	n	0.00	0	156	0	156	n	0.00	0	54	0	54	n	0.02	2	130	2	130	y	0.00	0	72	0	72	n	0.03	2	73	2	73	y	0.00	0	55	0	55	n	0.04	4	101	4	101	y	0.00	0	61	0	61	n	ENSMUSG00000001128.8	Cfp	chrX	protein_coding	complement factor properdin
known_NIR_20742	chrX	20826258	20827874	-	20826258	20827919	A5SS	ENSMUST00000129899.8	known	0.03	3	110	3	110	y	0.03	4	131	4	131	y	0.05	9	163	9	163	y	0.04	6	135	6	135	y	0.03	5	172	5	172	y	0.03	3	101	3	101	y	0.04	6	154	6	154	y	0.02	2	102	2	102	y	0.07	7	94	7	94	y	0.05	9	167	9	167	y	0.09	11	114	11	114	y	0.07	11	143	11	143	y	ENSMUSG00000001134.10	Uxt	chrX	protein_coding	ubiquitously expressed prefoldin like chaperone
known_NIR_20743	chrX	20851704	20852229	+	20851704	20852218	A3SS	ENSMUST00000123462.8	known	1.00	4	0	4	0	n	0.17	1	5	1	5	n	1.00	4	0	4	0	n	0.32	6	13	6	13	y	0.25	3	9	3	9	y	-	-	-	-	-	-	0.43	3	4	3	4	n	0.33	1	2	1	2	n	0.56	5	4	5	4	n	0.50	3	3	3	3	n	0.82	9	2	9	2	y	0.29	2	5	2	5	n	ENSMUSG00000086877.8	A230072C01Rik	chrX	lncRNA	RIKEN cDNA A230072C01 gene
known_NIR_20744	chrX	23127812;23160519	23160454;23181369	-	23127812	23181369	cassetteExon	ENSMUST00000115313.8	known	1.00	0.5	0	0;1	0	n	1.00	0.5	0	0;1	0	n	0.33	1.0	2	1;1	2	n	1.00	1.5	0	1;2	0	n	0.00	0.0	4	0;0	4	n	0.00	0.0	1	0;0	1	n	0.56	2.5	2	1;4	2	n	0.33	0.5	1	1;0	1	n	0.00	0.0	3	0;0	3	n	0.50	1.0	1	1;1	1	n	0.33	2.5	5	2;3	5	y	0.33	1.0	2	0;2	2	n	ENSMUSG00000036782.14	Klhl13	chrX	protein_coding	kelch-like 13
known_NIR_20745	chrX	35882386	35887221	-	35882386	35900126	A5SS	ENSMUST00000133980.2	known	1.00	3	0	3	0	n	-	-	-	-	-	-	0.67	8	4	8	4	y	-	-	-	-	-	-	0.80	8	2	8	2	y	0.33	1	2	1	2	n	1.00	2	0	2	0	n	1.00	2	0	2	0	n	0.67	4	2	4	2	n	1.00	1	0	1	0	n	1.00	5	0	5	0	n	1.00	5	0	5	0	n	ENSMUSG00000059708.13	Akap17b	chrX	protein_coding	A kinase (PRKA) anchor protein 17B
known_NIR_20746	chrX	35882386	35900126	-	35882386;35887989	35887221;35900126	ES	ENSMUST00000051906.13	known	0.00	0	2.0	0	3;1	n	0.00	0	0.5	0	0;1	n	0.50	4	4.0	4	8;0	n	0.00	0	1.5	0	0;3	n	0.33	2	4.0	2	8;0	n	0.80	2	0.5	2	1;0	n	0.00	0	2.5	0	2;3	n	0.00	0	1.0	0	2;0	n	0.31	2	4.5	2	4;5	y	0.00	0	0.5	0	1;0	n	0.00	0	3.0	0	5;1	n	0.00	0	4.0	0	5;3	n	ENSMUSG00000059708.13	Akap17b	chrX	protein_coding	A kinase (PRKA) anchor protein 17B
known_NIR_20747	chrX	36114815	36116292	-	36087822	36116292	A3SS	ENSMUST00000115249.10	known	0.98	56	1	56	1	n	1.00	32	0	32	0	n	1.00	45	0	45	0	n	1.00	73	0	73	0	n	1.00	61	0	61	0	n	1.00	27	0	27	0	n	1.00	58	0	58	0	n	0.96	45	2	45	2	y	1.00	51	0	51	0	n	1.00	80	0	80	0	n	1.00	48	0	48	0	n	1.00	43	0	43	0	n	ENSMUSG00000006423.16	C330007P06Rik	chrX	protein_coding	RIKEN cDNA C330007P06 gene
known_NIR_20748	chrX	36114815	36116292	-	36104270	36116292	A3SS	ENSMUST00000127966.8	known	1.00	56	0	56	0	n	1.00	32	0	32	0	n	0.94	45	3	45	3	y	1.00	73	0	73	0	n	1.00	61	0	61	0	n	0.96	27	1	27	1	n	1.00	58	0	58	0	n	1.00	45	0	45	0	n	1.00	51	0	51	0	n	1.00	80	0	80	0	n	1.00	48	0	48	0	n	1.00	43	0	43	0	n	ENSMUSG00000006423.16	C330007P06Rik	chrX	protein_coding	RIKEN cDNA C330007P06 gene
known_NIR_20749	chrX	36138182	36138371	+	36138182	36138364	A3SS	ENSMUST00000016452.11	known	0.00	0	88	0	88	n	0.03	3	90	3	90	y	0.00	0	104	0	104	n	0.01	1	114	1	114	n	0.00	0	125	0	125	n	0.00	0	77	0	77	n	0.00	0	107	0	107	n	0.01	1	74	1	74	n	0.01	1	83	1	83	n	0.01	1	163	1	163	n	0.00	0	102	0	102	n	0.00	0	129	0	129	n	ENSMUSG00000016308.13	Ube2a	chrX	protein_coding	ubiquitin-conjugating enzyme E2A
known_NIR_20750	chrX	36145399	36146261	+	36145399	36146252	A3SS	ENSMUST00000016452.11	known	0.00	0	134	0	134	n	0.00	0	149	0	149	n	0.00	0	157	0	157	n	0.00	0	112	0	112	n	0.01	2	167	2	167	y	0.03	3	88	3	88	y	0.00	0	195	0	195	n	0.00	0	77	0	77	n	0.00	0	142	0	142	n	0.02	3	180	3	180	y	0.00	0	139	0	139	n	0.03	5	168	5	168	y	ENSMUSG00000016308.13	Ube2a	chrX	protein_coding	ubiquitin-conjugating enzyme E2A
known_NIR_20751	chrX	36360671	36363160	-	36362757	36363160	3pMXE	ENSMUST00000133481.2	known	0.95	19	1	19	1	n	0.85	11	2	11	2	y	0.64	16	9	16	9	y	0.65	13	7	13	7	y	0.58	15	11	15	11	y	0.62	8	5	8	5	y	0.74	23	8	23	8	y	0.57	4	3	4	3	n	0.80	16	4	16	4	y	0.89	33	4	33	4	y	0.62	15	9	15	9	y	0.90	19	2	19	2	y	ENSMUSG00000036572.17	Upf3b	chrX	protein_coding	UPF3 regulator of nonsense transcripts homolog B (yeast)
known_NIR_20752	chrX	36360671;36362757	36362719;36363160	-	36360671	36363160	cassetteExon	ENSMUST00000076265.13	known	0.10	2.0	19	3;1	19	n	0.15	2.0	11	2;2	11	y	0.37	9.5	16	10;9	16	y	0.28	5.0	13	3;7	13	y	0.42	11.0	15	11;11	15	y	0.36	4.5	8	4;5	8	y	0.28	9.0	23	10;8	23	y	0.27	1.5	4	0;3	4	n	0.16	3.0	16	2;4	16	y	0.15	6.0	33	8;4	33	y	0.30	6.5	15	4;9	15	y	0.12	2.5	19	3;2	19	y	ENSMUSG00000036572.17	Upf3b	chrX	protein_coding	UPF3 regulator of nonsense transcripts homolog B (yeast)
known_NIR_20753	chrX	37278785	37281092	+	37278959	37281092	A5SS	ENSMUST00000049740.3	known	0.57	4	3	4	3	n	0.60	3	2	3	2	n	0.12	2	14	2	14	y	0.05	1	19	1	19	n	0.24	4	13	4	13	y	0.55	6	5	6	5	y	0.11	1	8	1	8	n	0.22	2	7	2	7	n	0.00	0	9	0	9	n	0.17	2	10	2	10	y	0.50	1	1	1	1	n	0.18	4	18	4	18	y	ENSMUSG00000048047.4	Zbtb33	chrX	protein_coding	zinc finger and BTB domain containing 33
known_NIR_20754	chrX	37494448	37513144	-	37491158	37513144	A3SS	ENSMUST00000074913.12	known	0.99	1118	12	1118	12	y	0.99	1074	14	1074	14	y	0.99	765	8	765	8	y	0.99	1138	14	1138	14	y	0.99	1339	11	1339	11	y	0.99	530	7	530	7	y	0.98	1425	22	1425	22	y	0.98	565	11	565	11	y	0.98	983	16	983	16	y	0.99	1500	13	1500	13	y	0.99	1130	15	1130	15	y	0.98	1293	21	1293	21	y	ENSMUSG00000016534.16	Lamp2	chrX	protein_coding	lysosomal-associated membrane protein 2
known_NIR_20755	chrX	37510728	37513144	-	37491158	37513144	A3SS	ENSMUST00000074913.12	known	0.97	447	12	447	12	y	0.96	383	14	383	14	y	0.98	476	8	476	8	y	0.98	570	14	570	14	y	0.99	828	11	828	11	y	0.98	302	7	302	7	y	0.97	649	22	649	22	y	0.97	405	11	405	11	y	0.97	442	16	442	16	y	0.98	684	13	684	13	y	0.96	346	15	346	15	y	0.97	623	21	623	21	y	ENSMUSG00000016534.16	Lamp2	chrX	protein_coding	lysosomal-associated membrane protein 2
known_NIR_20756	chrX	37510728	37513144	-	37494448	37513144	A3SS	ENSMUST00000016678.14	known	0.29	447	1118	447	1118	y	0.26	383	1074	383	1074	y	0.38	476	765	476	765	y	0.33	570	1138	570	1138	y	0.38	828	1339	828	1339	y	0.36	302	530	302	530	y	0.31	649	1425	649	1425	y	0.42	405	565	405	565	y	0.31	442	983	442	983	y	0.31	684	1500	684	1500	y	0.23	346	1130	346	1130	y	0.33	623	1293	623	1293	y	ENSMUSG00000016534.16	Lamp2	chrX	protein_coding	lysosomal-associated membrane protein 2
known_NIR_20757	chrX	37544233	37545126	-	37531017	37545126	A3SS	ENSMUST00000074913.12	known	0.00	0	811	0	811	n	0.00	1	457	1	457	n	0.00	0	753	0	753	n	0.01	6	912	6	912	y	0.00	0	1119	0	1119	n	0.00	0	502	0	502	n	0.00	2	866	2	866	y	0.00	2	600	2	600	y	0.00	1	707	1	707	n	0.00	2	978	2	978	y	0.00	2	609	2	609	y	0.00	0	1060	0	1060	n	ENSMUSG00000016534.16	Lamp2	chrX	protein_coding	lysosomal-associated membrane protein 2
known_NIR_20758	chrX	37689655;37690958	37690806;37691453	+	37689655	37691453	cassetteExon	ENSMUST00000140204.8	known	1.00	143.0	0	137;149	0	n	0.98	103.5	2	102;105	2	y	0.98	122.0	3	107;137	3	y	0.98	125.0	3	134;116	3	y	0.95	142.0	7	140;144	7	y	0.95	61.5	3	64;59	3	y	1.00	152.5	0	161;144	0	n	0.98	79.0	2	83;75	2	y	0.95	120.5	6	133;108	6	y	0.99	149.5	2	160;139	2	y	0.98	126.5	3	115;138	3	y	0.99	166.0	1	167;165	1	n	ENSMUSG00000000355.14	Mcts1	chrX	protein_coding	malignant T cell amplified sequence 1
known_NIR_20759	chrX	37690274	37690806	+	37689655	37690806	A5SS	ENSMUST00000000365.3	known	0.03	4	137	4	137	y	0.06	6	102	6	102	y	0.06	7	107	7	107	y	0.09	14	134	14	134	y	0.04	6	140	6	140	y	0.10	7	64	7	64	y	0.04	7	161	7	161	y	0.08	7	83	7	83	y	0.06	9	133	9	133	y	0.02	3	160	3	160	y	0.09	11	115	11	115	y	0.11	20	167	20	167	y	ENSMUSG00000000355.14	Mcts1	chrX	protein_coding	malignant T cell amplified sequence 1
known_NIR_20760	chrX	37698854	37700632	+	37697745	37700632	A5SS	ENSMUST00000133128.8	known	0.29	2	5	2	5	n	0.23	3	10	3	10	y	0.00	0	15	0	15	n	0.40	4	6	4	6	y	0.21	3	11	3	11	y	0.40	2	3	2	3	n	0.31	5	11	5	11	y	0.18	2	9	2	9	y	0.11	1	8	1	8	n	0.20	3	12	3	12	y	0.25	3	9	3	9	y	0.23	3	10	3	10	y	ENSMUSG00000000355.14	Mcts1	chrX	protein_coding	malignant T cell amplified sequence 1
known_NIR_20761	chrX	40891863	40892333	-	40891869	40892333	A3SS	ENSMUST00000124458.8	known	0.00	0	16	0	16	n	0.00	0	24	0	24	n	0.03	1	29	1	29	n	0.00	0	32	0	32	n	0.05	1	20	1	20	n	0.00	0	18	0	18	n	0.04	1	25	1	25	n	0.00	0	12	0	12	n	0.04	1	25	1	25	n	0.08	2	23	2	23	y	0.00	0	14	0	14	n	0.00	0	27	0	27	n	ENSMUSG00000037475.16	Thoc2	chrX	protein_coding	THO complex 2
known_NIR_20762	chrX	40901371	40902107	-	40901371	40902827	A5SS	ENSMUST00000047037.15	known	0.16	3	16	3	16	y	0.00	0	15	0	15	n	0.00	0	15	0	15	n	0.21	5	19	5	19	y	0.31	4	9	4	9	y	0.00	0	12	0	12	n	0.09	1	10	1	10	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.25	3	9	3	9	y	0.14	2	12	2	12	y	0.04	1	26	1	26	n	ENSMUSG00000037475.16	Thoc2	chrX	protein_coding	THO complex 2
known_NIR_20763	chrX	40901371	40902827	-	40901452	40902827	A3SS	ENSMUST00000124458.8	known	0.80	16	4	16	4	y	0.88	15	2	15	2	y	0.94	15	1	15	1	n	0.86	19	3	19	3	y	0.90	9	1	9	1	n	1.00	12	0	12	0	n	0.77	10	3	10	3	y	0.69	11	5	11	5	y	0.93	13	1	13	1	n	0.75	9	3	9	3	y	1.00	12	0	12	0	n	0.87	26	4	26	4	y	ENSMUSG00000037475.16	Thoc2	chrX	protein_coding	THO complex 2
known_NIR_20764	chrX	41148909	41155558	+	41148728	41155558	A5SS	ENSMUST00000141316.8	known	0.50	2	2	2	2	n	1.00	4	0	4	0	n	1.00	4	0	4	0	n	0.77	10	3	10	3	y	1.00	10	0	10	0	n	1.00	2	0	2	0	n	0.67	4	2	4	2	n	1.00	7	0	7	0	n	1.00	7	0	7	0	n	0.67	6	3	6	3	n	1.00	6	0	6	0	n	0.80	4	1	4	1	n	ENSMUSG00000025860.16	Xiap	chrX	protein_coding	X-linked inhibitor of apoptosis
known_NIR_20765	chrX	41149364	41155558	+	41148728	41155558	A5SS	ENSMUST00000141316.8	known	0.87	13	2	13	2	y	1.00	7	0	7	0	n	1.00	14	0	14	0	n	0.80	12	3	12	3	y	1.00	21	0	21	0	n	1.00	7	0	7	0	n	0.82	9	2	9	2	y	1.00	5	0	5	0	n	1.00	9	0	9	0	n	0.86	18	3	18	3	y	1.00	5	0	5	0	n	0.88	7	1	7	1	n	ENSMUSG00000025860.16	Xiap	chrX	protein_coding	X-linked inhibitor of apoptosis
known_NIR_20766	chrX	41149364	41155558	+	41148909	41155558	A5SS	ENSMUST00000225851.2	known	0.87	13	2	13	2	y	0.64	7	4	7	4	y	0.78	14	4	14	4	y	0.55	12	10	12	10	y	0.68	21	10	21	10	y	0.78	7	2	7	2	n	0.69	9	4	9	4	y	0.42	5	7	5	7	y	0.56	9	7	9	7	y	0.75	18	6	18	6	y	0.45	5	6	5	6	y	0.64	7	4	7	4	y	ENSMUSG00000025860.16	Xiap	chrX	protein_coding	X-linked inhibitor of apoptosis
known_NIR_20767	chrX	41156933	41157234	+	41155679	41157234	A5SS	ENSMUST00000141316.8	known	0.23	5	17	5	17	y	0.12	1	7	1	7	n	0.27	7	19	7	19	y	0.24	5	16	5	16	y	0.12	4	30	4	30	y	0.10	2	19	2	19	y	0.17	5	24	5	24	y	0.40	10	15	10	15	y	0.11	2	17	2	17	y	0.13	4	26	4	26	y	0.07	1	13	1	13	n	0.14	2	12	2	12	y	ENSMUSG00000025860.16	Xiap	chrX	protein_coding	X-linked inhibitor of apoptosis
known_NIR_20768	chrX	41157359	41183244	+	41157359	41160119	3pMXE	ENSMUST00000141316.8	known	0.46	12	14	12	14	y	0.87	13	2	13	2	y	0.72	29	11	29	11	y	0.84	36	7	36	7	y	0.79	41	11	41	11	y	0.92	22	2	22	2	y	0.73	30	11	30	11	y	0.80	20	5	20	5	y	0.57	16	12	16	12	y	0.78	31	9	31	9	y	0.48	12	13	12	13	y	0.62	25	15	25	15	y	ENSMUSG00000025860.16	Xiap	chrX	protein_coding	X-linked inhibitor of apoptosis
known_NIR_20769	chrX	41157359	41183244	+	41160380	41183244	5pMXE	ENSMUST00000055483.10	known	1.00	12	0	12	0	n	1.00	13	0	13	0	n	1.00	29	0	29	0	n	0.84	36	7	36	7	y	1.00	41	0	41	0	n	0.96	22	1	22	1	n	0.86	30	5	30	5	y	0.80	20	5	20	5	y	0.76	16	5	16	5	y	0.89	31	4	31	4	y	0.92	12	1	12	1	n	1.00	25	0	25	0	n	ENSMUSG00000025860.16	Xiap	chrX	protein_coding	X-linked inhibitor of apoptosis
known_NIR_20770	chrX	41157359	41183249	+	41157359	41160119	3pMXE	ENSMUST00000141316.8	known	0.18	3	14	3	14	y	0.00	0	2	0	2	n	0.27	4	11	4	11	y	0.00	0	7	0	7	n	0.15	2	11	2	11	y	0.60	3	2	3	2	n	0.15	2	11	2	11	y	0.38	3	5	3	5	n	0.00	0	12	0	12	n	0.25	3	9	3	9	y	0.24	4	13	4	13	y	0.29	6	15	6	15	y	ENSMUSG00000025860.16	Xiap	chrX	protein_coding	X-linked inhibitor of apoptosis
known_NIR_20771	chrX	41157359	41183249	+	41157359	41183244	A3SS	ENSMUST00000224454.2	known	0.20	3	12	3	12	y	0.00	0	13	0	13	n	0.12	4	29	4	29	y	0.00	0	36	0	36	n	0.05	2	41	2	41	y	0.12	3	22	3	22	y	0.06	2	30	2	30	y	0.13	3	20	3	20	y	0.00	0	16	0	16	n	0.09	3	31	3	31	y	0.25	4	12	4	12	y	0.19	6	25	6	25	y	ENSMUSG00000025860.16	Xiap	chrX	protein_coding	X-linked inhibitor of apoptosis
known_NIR_20772	chrX	41157359;41160380	41160119;41183244	+	41157359	41183244	cassetteExon	ENSMUST00000224454.2	known	0.37	7.0	12	14;0	12	n	0.07	1.0	13	2;0	13	n	0.16	5.5	29	11;0	29	n	0.16	7.0	36	7;7	36	y	0.12	5.5	41	11;0	41	n	0.06	1.5	22	2;1	22	n	0.21	8.0	30	11;5	30	y	0.20	5.0	20	5;5	20	y	0.35	8.5	16	12;5	16	y	0.17	6.5	31	9;4	31	y	0.37	7.0	12	13;1	12	n	0.23	7.5	25	15;0	25	n	ENSMUSG00000025860.16	Xiap	chrX	protein_coding	X-linked inhibitor of apoptosis
known_NIR_20773	chrX	41157749	41183244	+	41157359	41183244	A5SS	ENSMUST00000224454.2	known	0.37	7	12	7	12	y	0.13	2	13	2	13	y	0.28	11	29	11	29	y	0.05	2	36	2	36	y	0.16	8	41	8	41	y	0.12	3	22	3	22	y	0.21	8	30	8	30	y	0.17	4	20	4	20	y	0.20	4	16	4	16	y	0.11	4	31	4	31	y	0.33	6	12	6	12	y	0.32	12	25	12	25	y	ENSMUSG00000025860.16	Xiap	chrX	protein_coding	X-linked inhibitor of apoptosis
known_NIR_20774	chrX	41157749	41183244	+	41157749	41185490	A3SS	ENSMUST00000145065.2	known	1.00	7	0	7	0	n	1.00	2	0	2	0	n	1.00	11	0	11	0	n	1.00	2	0	2	0	n	0.89	8	1	8	1	n	1.00	3	0	3	0	n	1.00	8	0	8	0	n	1.00	4	0	4	0	n	1.00	4	0	4	0	n	1.00	4	0	4	0	n	1.00	6	0	6	0	n	0.86	12	2	12	2	y	ENSMUSG00000025860.16	Xiap	chrX	protein_coding	X-linked inhibitor of apoptosis
known_NIR_20775	chrX	41157749	41185490	+	41157749;41184149	41183244;41185490	ES	ENSMUST00000115095.9	known	0.00	0	27.0	0	7;47	n	0.00	0	15.5	0	2;29	n	0.00	0	50.0	0	11;89	n	0.00	0	41.0	0	2;80	n	0.02	1	60.5	1	8;113	n	0.00	0	24.0	0	3;45	n	0.00	0	41.5	0	8;75	n	0.00	0	36.5	0	4;69	n	0.00	0	34.5	0	4;65	n	0.00	0	43.5	0	4;83	n	0.00	0	24.0	0	6;42	n	0.04	2	44.5	2	12;77	y	ENSMUSG00000025860.16	Xiap	chrX	protein_coding	X-linked inhibitor of apoptosis
known_NIR_20776	chrX	41157749	41185490	+	41184149	41185490	A5SS&ES	ENSMUST00000115094.8	known	0.00	0	47	0	47	n	0.00	0	29	0	29	n	0.00	0	89	0	89	n	0.00	0	80	0	80	n	0.01	1	113	1	113	n	0.00	0	45	0	45	n	0.00	0	75	0	75	n	0.00	0	69	0	69	n	0.00	0	65	0	65	n	0.00	0	83	0	83	n	0.00	0	42	0	42	n	0.03	2	77	2	77	y	ENSMUSG00000025860.16	Xiap	chrX	protein_coding	X-linked inhibitor of apoptosis
known_NIR_20777	chrX	41160380	41183244	+	41157749	41183244	A5SS	ENSMUST00000115095.9	known	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.78	7	2	7	2	n	0.00	0	8	0	8	n	0.25	1	3	1	3	n	0.38	5	8	5	8	y	0.56	5	4	5	4	n	0.56	5	4	5	4	n	0.50	4	4	4	4	n	0.14	1	6	1	6	n	0.00	0	12	0	12	n	ENSMUSG00000025860.16	Xiap	chrX	protein_coding	X-linked inhibitor of apoptosis
known_NIR_20778	chrX	41160380	41183244	+	41160380	41161351	3pMXE	ENSMUST00000146874.3	known	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.78	7	2	7	2	n	0.00	0	7	0	7	n	1.00	1	0	1	0	n	0.33	5	10	5	10	y	0.83	5	1	5	1	n	0.50	5	5	5	5	y	0.44	4	5	4	5	n	0.12	1	7	1	7	n	0.00	0	3	0	3	n	ENSMUSG00000025860.16	Xiap	chrX	protein_coding	X-linked inhibitor of apoptosis
known_NIR_20779	chrX	41239168	41290732	+	41238562	41290732	A5SS	ENSMUST00000115073.9	known	0.20	2	8	2	8	y	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.11	1	8	1	8	n	0.00	0	1	0	1	n	0.22	2	7	2	7	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.25	2	6	2	6	n	0.09	1	10	1	10	n	0.00	0	3	0	3	n	ENSMUSG00000025862.15	Stag2	chrX	protein_coding	stromal antigen 2
known_NIR_20780	chrX	41239711	41290732	+	41238562	41290732	A5SS	ENSMUST00000115073.9	known	0.58	11	8	11	8	y	0.30	3	7	3	7	y	0.73	11	4	11	4	y	0.69	27	12	27	12	y	0.67	16	8	16	8	y	0.89	8	1	8	1	n	0.65	13	7	13	7	y	0.44	7	9	7	9	y	0.47	7	8	7	8	y	0.71	15	6	15	6	y	0.38	6	10	6	10	y	0.82	14	3	14	3	y	ENSMUSG00000025862.15	Stag2	chrX	protein_coding	stromal antigen 2
known_NIR_20781	chrX	41239711	41290732	+	41238638	41290732	A5SS	ENSMUST00000127618.8	known	0.92	11	1	11	1	n	1.00	3	0	3	0	n	1.00	11	0	11	0	n	1.00	27	0	27	0	n	0.94	16	1	16	1	n	1.00	8	0	8	0	n	0.87	13	2	13	2	y	1.00	7	0	7	0	n	1.00	7	0	7	0	n	1.00	15	0	15	0	n	1.00	6	0	6	0	n	0.88	14	2	14	2	y	ENSMUSG00000025862.15	Stag2	chrX	protein_coding	stromal antigen 2
known_NIR_20782	chrX	41239711	41290732	+	41239168	41290732	A5SS	ENSMUST00000141414.2	known	0.85	11	2	11	2	y	1.00	3	0	3	0	n	1.00	11	0	11	0	n	1.00	27	0	27	0	n	0.94	16	1	16	1	n	1.00	8	0	8	0	n	0.87	13	2	13	2	y	1.00	7	0	7	0	n	1.00	7	0	7	0	n	0.88	15	2	15	2	y	0.86	6	1	6	1	n	1.00	14	0	14	0	n	ENSMUSG00000025862.15	Stag2	chrX	protein_coding	stromal antigen 2
known_NIR_20783	chrX	41241297	41290732	+	41238562	41290732	A5SS	ENSMUST00000115073.9	known	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.08	1	12	1	12	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.25	2	6	2	6	n	0.17	2	10	2	10	y	0.25	1	3	1	3	n	ENSMUSG00000025862.15	Stag2	chrX	protein_coding	stromal antigen 2
known_NIR_20784	chrX	41241297	41290732	+	41239711	41290732	A5SS	ENSMUST00000069619.14	known	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.04	1	27	1	27	n	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.12	2	15	2	15	y	0.25	2	6	2	6	n	0.07	1	14	1	14	n	ENSMUSG00000025862.15	Stag2	chrX	protein_coding	stromal antigen 2
known_NIR_20785	chrX	41355152	41358258	+	41355152;41355353	41355243;41358258	ES	ENSMUST00000115073.9	known	0.76	41	13.0	41	12;14	y	0.76	44	14.0	44	18;10	y	0.81	66	15.0	66	17;13	y	0.86	89	14.0	89	13;15	y	0.72	71	27.0	71	28;26	y	0.87	26	4.0	26	4;4	y	0.75	75	25.0	75	23;27	y	0.81	29	7.0	29	9;5	y	0.72	52	20.5	52	23;18	y	0.69	78	34.5	78	28;41	y	0.67	48	24.0	48	24;24	y	0.84	81	15.5	81	19;12	y	ENSMUSG00000025862.15	Stag2	chrX	protein_coding	stromal antigen 2
known_NIR_20786	chrX	43877170	43877290	-	43877170	43877268	A5SS	ENSMUST00000115056.2	known	0.33	1	2	1	2	n	1.00	7	0	7	0	n	0.50	1	1	1	1	n	0.88	7	1	7	1	n	0.50	2	2	2	2	n	1.00	3	0	3	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	4	0	4	0	n	0.83	5	1	5	1	n	0.73	8	3	8	3	y	0.57	4	3	4	3	n	ENSMUSG00000045284.10	Dcaf12l1	chrX	protein_coding	DDB1 and CUL4 associated factor 12-like 1
known_NIR_20787	chrX	47291212	47295545	-	47283597	47295545	A3SS	ENSMUST00000037960.11	known	0.03	4	155	4	155	y	0.02	3	126	3	126	y	0.02	4	171	4	171	y	0.00	0	194	0	194	n	0.02	4	242	4	242	y	0.01	1	126	1	126	n	0.00	1	215	1	215	n	0.02	3	159	3	159	y	0.01	2	135	2	135	y	0.00	0	262	0	262	n	0.02	3	180	3	180	y	0.01	2	227	2	227	y	ENSMUSG00000036985.13	Zdhhc9	chrX	protein_coding	zinc finger, DHHC domain containing 9
known_NIR_20788	chrX	47295834	47297000	-	47295834	47297357	A5SS	ENSMUST00000037960.11	known	0.00	0	107	0	107	n	0.00	0	97	0	97	n	0.00	0	98	0	98	n	0.01	2	173	2	173	y	0.00	0	188	0	188	n	0.00	0	104	0	104	n	0.00	0	168	0	168	n	0.01	2	137	2	137	y	0.03	3	117	3	117	y	0.00	0	216	0	216	n	0.00	0	100	0	100	n	0.01	1	175	1	175	n	ENSMUSG00000036985.13	Zdhhc9	chrX	protein_coding	zinc finger, DHHC domain containing 9
known_NIR_20789	chrX	47295834	47297715	-	47295834	47297357	5pMXE	ENSMUST00000037960.11	known	0.03	3	107	3	107	y	0.02	2	97	2	97	y	0.00	0	98	0	98	n	0.02	3	173	3	173	y	0.03	5	188	5	188	y	0.05	5	104	5	104	y	0.01	1	168	1	168	n	0.00	0	137	0	137	n	0.00	0	117	0	117	n	0.00	1	216	1	216	n	0.02	2	100	2	100	y	0.02	3	175	3	175	y	ENSMUSG00000036985.13	Zdhhc9	chrX	protein_coding	zinc finger, DHHC domain containing 9
known_NIR_20790	chrX	47295834;47296796	47296400;47297357	-	47295834	47297357	cassetteExon	ENSMUST00000037960.11	known	0.00	0.0	107	0;0	107	n	0.01	0.5	97	1;0	97	n	0.00	0.0	98	0;0	98	n	0.01	1.0	173	0;2	173	n	0.01	1.5	188	1;2	188	n	0.00	0.5	104	0;1	104	n	0.01	1.0	168	2;0	168	n	0.00	0.5	137	1;0	137	n	0.01	1.0	117	0;2	117	n	0.01	2.0	216	2;2	216	y	0.01	1.0	100	2;0	100	n	0.01	2.0	175	1;3	175	n	ENSMUSG00000036985.13	Zdhhc9	chrX	protein_coding	zinc finger, DHHC domain containing 9
known_NIR_20791	chrX	47352509	47355292	+	47352509	47361677	A3SS	ENSMUST00000080713.5	known	0.00	0	18	0	18	n	0.00	0	11	0	11	n	0.04	1	25	1	25	n	0.00	0	12	0	12	n	0.00	0	32	0	32	n	0.00	0	12	0	12	n	0.00	0	18	0	18	n	0.14	2	12	2	12	y	0.00	0	13	0	13	n	0.00	0	22	0	22	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	ENSMUSG00000063785.13	Utp14a	chrX	protein_coding	UTP14A small subunit processome component
known_NIR_20792	chrX	47432766	47450410	+	47431757	47450410	A5SS	ENSMUST00000136348.8	known	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.40	2	3	2	3	n	0.00	0	8	0	8	n	0.17	2	10	2	10	y	1.00	1	0	1	0	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	ENSMUSG00000036959.16	Bcorl1	chrX	protein_coding	BCL6 co-repressor-like 1
known_NIR_20793	chrX	47632318	47636142	-	47632318;47632580	47632462;47636142	ES	ENSMUST00000076635.13	known	0.20	1	4.0	1	6;2	n	0.00	0	6.5	0	8;5	n	0.19	3	12.5	3	18;7	y	0.14	1	6.0	1	7;5	n	0.00	0	7.0	0	9;5	n	0.29	2	5.0	2	6;4	y	0.17	2	9.5	2	14;5	y	0.25	2	6.0	2	4;8	y	0.00	0	8.0	0	8;8	n	0.18	2	9.0	2	12;6	y	0.00	0	10.5	0	15;6	n	0.11	1	8.5	1	12;5	n	ENSMUSG00000036916.14	Zfp280c	chrX	protein_coding	zinc finger protein 280C
known_NIR_20794	chrX	47667406	47677580	-	47667433	47677580	A3SS	ENSMUST00000076635.13	known	0.67	2	1	2	1	n	1.00	1	0	1	0	n	0.29	2	5	2	5	n	0.62	5	3	5	3	n	0.71	5	2	5	2	n	0.67	2	1	2	1	n	0.50	3	3	3	3	n	0.56	5	4	5	4	n	1.00	2	0	2	0	n	0.83	5	1	5	1	n	1.00	6	0	6	0	n	0.60	6	4	6	4	y	ENSMUSG00000036916.14	Zfp280c	chrX	protein_coding	zinc finger protein 280C
known_NIR_20795	chrX	47717060	47718129	+	47712705	47718129	A5SS	ENSMUST00000153047.8	known	0.40	2	3	2	3	n	0.00	0	2	0	2	n	0.69	11	5	11	5	y	0.40	2	3	2	3	n	0.17	1	5	1	5	n	0.50	3	3	3	3	n	0.56	5	4	5	4	n	0.50	1	1	1	1	n	0.43	3	4	3	4	n	0.43	3	4	3	4	n	0.75	3	1	3	1	n	-	-	-	-	-	-	ENSMUSG00000031105.17	Slc25a14	chrX	protein_coding	solute carrier family 25 (mitochondrial carrier, brain), member 14
known_NIR_20796	chrX	48100511	48102374	-	48100511;48102057	48102010;48102374	ES	ENSMUST00000167659.8	known	0.52	16	14.5	16	14;15	y	0.70	20	8.5	20	7;10	y	0.33	6	12.0	6	11;13	y	0.51	20	19.0	20	17;21	y	0.51	19	18.0	19	13;23	y	0.61	10	6.5	10	8;5	y	0.55	20	16.5	20	18;15	y	0.55	9	7.5	9	9;6	y	0.43	10	13.0	10	13;13	y	0.46	21	25.0	21	25;25	y	0.50	16	16.0	16	17;15	y	0.52	14	13.0	14	13;13	y	ENSMUSG00000031109.17	Enox2	chrX	protein_coding	ecto-NOX disulfide-thiol exchanger 2
known_NIR_20797	chrX	48107771	48112004	-	48107771	48111971	A5SS	ENSMUST00000167659.8	known	0.06	1	15	1	15	n	0.06	1	16	1	16	n	0.20	3	12	3	12	y	0.00	0	11	0	11	n	0.12	3	21	3	21	y	0.12	1	7	1	7	n	0.09	3	32	3	32	y	0.00	0	11	0	11	n	0.21	4	15	4	15	y	0.00	0	32	0	32	n	0.08	2	23	2	23	y	0.04	1	22	1	22	n	ENSMUSG00000031109.17	Enox2	chrX	protein_coding	ecto-NOX disulfide-thiol exchanger 2
known_NIR_20798	chrX	48169628	48375722	-	48169628	48257518	A5SS&ES	ENSMUST00000114914.8	known	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.40	2	3	2	3	n	0.25	3	9	3	9	y	0.21	3	11	3	11	y	0.08	1	12	1	12	n	0.08	1	12	1	12	n	0.00	0	12	0	12	n	0.06	1	16	1	16	n	0.19	3	13	3	13	y	0.00	0	9	0	9	n	0.20	3	12	3	12	y	ENSMUSG00000031109.17	Enox2	chrX	protein_coding	ecto-NOX disulfide-thiol exchanger 2
known_NIR_20799	chrX	48169628	48375722	-	48169628;48257661	48257518;48375722	ES	ENSMUST00000114918.9	known	0.00	0	6.5	0	6;7	n	0.00	0	4.0	0	5;3	n	0.33	2	4.0	2	3;5	y	0.30	3	7.0	3	9;5	y	0.22	3	10.5	3	11;10	y	0.10	1	9.0	1	12;6	n	0.10	1	9.0	1	12;6	n	0.00	0	7.5	0	12;3	n	0.08	1	11.5	1	16;7	n	0.16	3	15.5	3	13;18	y	0.00	0	7.5	0	9;6	n	0.25	3	9.0	3	12;6	y	ENSMUSG00000031109.17	Enox2	chrX	protein_coding	ecto-NOX disulfide-thiol exchanger 2
known_NIR_20800	chrX	48257661	48375722	-	48257661	48375733	A5SS	ENSMUST00000114914.8	known	0.88	7	1	7	1	n	1.00	3	0	3	0	n	0.56	5	4	5	4	n	0.62	5	3	5	3	n	0.56	10	8	10	8	y	0.86	6	1	6	1	n	0.75	6	2	6	2	n	1.00	3	0	3	0	n	0.88	7	1	7	1	n	0.60	18	12	18	12	y	0.67	6	3	6	3	n	1.00	6	0	6	0	n	ENSMUSG00000031109.17	Enox2	chrX	protein_coding	ecto-NOX disulfide-thiol exchanger 2
known_NIR_20801	chrX	49647261	49649454	-	49647261	49649686	A5SS	ENSMUST00000205059.3	known	0.04	1	26	1	26	n	0.00	0	20	0	20	n	0.00	0	10	0	10	n	0.14	2	12	2	12	y	0.05	1	20	1	20	n	0.00	0	4	0	4	n	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.08	2	22	2	22	y	0.08	1	12	1	12	n	0.00	0	15	0	15	n	0.00	0	24	0	24	n	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
known_NIR_20802	chrX	49647261	49649686	-	49647261	49653690	A5SS	ENSMUST00000124842.8	known	1.00	26	0	26	0	n	0.83	20	4	20	4	y	0.77	10	3	10	3	y	0.92	12	1	12	1	n	0.80	20	5	20	5	y	0.44	4	5	4	5	n	1.00	15	0	15	0	n	0.93	13	1	13	1	n	1.00	22	0	22	0	n	0.80	12	3	12	3	y	0.79	15	4	15	4	y	0.86	24	4	24	4	y	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
known_NIR_20803	chrX	49647261	49651557	-	49647261	49649454	5pMXE	ENSMUST00000203672.2	known	0.83	5	1	5	1	n	1.00	9	0	9	0	n	1.00	5	0	5	0	n	0.83	10	2	10	2	y	0.91	10	1	10	1	n	1.00	8	0	8	0	n	1.00	9	0	9	0	n	1.00	8	0	8	0	n	0.83	10	2	10	2	y	0.83	5	1	5	1	n	1.00	6	0	6	0	n	1.00	5	0	5	0	n	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
known_NIR_20804	chrX	49647261	49651557	-	49647261;49649883	49649686;49651557	ES	ENSMUST00000205059.3	known	0.18	5	23.0	5	26;20	y	0.39	9	14.0	9	20;8	y	0.34	5	9.5	5	10;9	y	0.39	10	15.5	10	12;19	y	0.32	10	21.0	10	20;22	y	0.64	8	4.5	8	4;5	y	0.37	9	15.5	9	15;16	y	0.36	8	14.5	8	13;16	y	0.34	10	19.0	10	22;16	y	0.28	5	13.0	5	12;14	y	0.29	6	14.5	6	15;14	y	0.18	5	23.5	5	24;23	y	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
known_NIR_20805	chrX	49647261	49651557	-	49649883	49651557	3pMXE	ENSMUST00000204974.3	known	0.20	5	20	5	20	y	0.53	9	8	9	8	y	0.36	5	9	5	9	y	0.34	10	19	10	19	y	0.31	10	22	10	22	y	0.62	8	5	8	5	y	0.36	9	16	9	16	y	0.33	8	16	8	16	y	0.38	10	16	10	16	y	0.26	5	14	5	14	y	0.30	6	14	6	14	y	0.18	5	23	5	23	y	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
known_NIR_20806	chrX	49647261	49653690	-	49647261	49651557	5pMXE	ENSMUST00000204729.2	known	0.00	0	5	0	5	n	0.31	4	9	4	9	y	0.38	3	5	3	5	n	0.09	1	10	1	10	n	0.33	5	10	5	10	y	0.38	5	8	5	8	y	0.00	0	9	0	9	n	0.11	1	8	1	8	n	0.00	0	10	0	10	n	0.38	3	5	3	5	n	0.40	4	6	4	6	y	0.44	4	5	4	5	n	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
known_NIR_20807	chrX	49647261;49649883	49649454;49651557	-	49647261	49651557	cassetteExon	ENSMUST00000204729.2	known	0.68	10.5	5	1;20	5	n	0.31	4.0	9	0;8	9	n	0.47	4.5	5	0;9	5	n	0.51	10.5	10	2;19	10	y	0.53	11.5	10	1;22	10	n	0.24	2.5	8	0;5	8	n	0.47	8.0	9	0;16	9	n	0.50	8.0	8	0;16	8	n	0.47	9.0	10	2;16	10	y	0.60	7.5	5	1;14	5	n	0.54	7.0	6	0;14	6	n	0.70	11.5	5	0;23	5	n	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
known_NIR_20808	chrX	49647261;49651831	49651557;49653690	-	49647261	49653690	cassetteExon	ENSMUST00000124842.8	known	1.00	12.5	0	5;20	0	n	0.75	12.0	4	9;15	4	y	0.65	5.5	3	5;6	3	y	0.94	16.0	1	10;22	1	n	0.75	15.0	5	10;20	5	y	0.73	13.5	5	8;19	5	y	1.00	10.0	0	9;11	0	n	0.90	9.0	1	8;10	1	n	1.00	13.5	0	10;17	0	n	0.68	6.5	3	5;8	3	y	0.74	11.5	4	6;17	4	y	0.79	15.5	4	5;26	4	y	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
known_NIR_20809	chrX	49653844	49656417	-	49653844	49704238	A5SS	ENSMUST00000124842.8	known	0.98	58	1	58	1	n	1.00	41	0	41	0	n	0.98	48	1	48	1	n	1.00	32	0	32	0	n	0.94	97	6	97	6	y	1.00	39	0	39	0	n	1.00	60	0	60	0	n	1.00	45	0	45	0	n	1.00	55	0	55	0	n	0.98	55	1	55	1	n	1.00	46	0	46	0	n	1.00	56	0	56	0	n	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
known_NIR_20810	chrX	49659168	49662101	-	49659168;49662018	49661892;49662101	ES	ENSMUST00000204974.3	known	0.42	7	9.5	7	16;3	y	0.48	10	11.0	10	14;8	y	0.44	13	16.5	13	31;2	y	0.36	10	17.5	10	31;4	y	0.38	12	20.0	12	35;5	y	0.65	11	6.0	11	9;3	y	0.32	7	15.0	7	29;1	n	0.25	5	15.0	5	25;5	y	0.19	3	13.0	3	24;2	y	0.36	9	16.0	9	29;3	y	0.16	3	16.0	3	26;6	y	0.33	10	20.0	10	35;5	y	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
known_NIR_20811	chrX	49666901	49669458	-	49666901	49669690	A5SS	ENSMUST00000204974.3	known	0.85	29	5	29	5	y	0.76	29	9	29	9	y	0.77	23	7	23	7	y	0.73	19	7	19	7	y	0.64	27	15	27	15	y	0.74	20	7	20	7	y	0.68	19	9	19	9	y	0.69	11	5	11	5	y	0.81	22	5	22	5	y	0.68	19	9	19	9	y	0.80	24	6	24	6	y	0.80	28	7	28	7	y	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
known_NIR_20812	chrX	49701727	49704238	-	49653844	49704238	A3SS	ENSMUST00000124842.8	known	0.97	39	1	39	1	n	1.00	23	0	23	0	n	0.97	37	1	37	1	n	1.00	27	0	27	0	n	0.88	42	6	42	6	y	1.00	16	0	16	0	n	1.00	36	0	36	0	n	1.00	31	0	31	0	n	1.00	25	0	25	0	n	0.97	36	1	36	1	n	1.00	23	0	23	0	n	1.00	20	0	20	0	n	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
known_NIR_20813	chrX	49704392;49709681	49709552;49715314	-	49704392	49715314	cassetteExon	ENSMUST00000124842.8	known	0.18	7.0	31	8;6	31	y	0.13	4.0	27	4;4	27	y	0.38	8.5	14	7;10	14	y	0.22	6.5	23	11;2	23	y	0.26	10.0	29	11;9	29	y	0.16	5.5	29	5;6	29	y	0.24	8.5	27	7;10	27	y	0.15	6.0	33	8;4	33	y	0.13	3.5	24	7;0	24	n	0.26	11.0	32	9;13	32	y	0.20	7.5	30	8;7	30	y	0.24	11.0	35	14;8	35	y	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
known_NIR_20814	chrX	49715386;49716127	49716084;49719768	-	49715386	49719768	cassetteExon	ENSMUST00000124842.8	known	0.84	26.0	5	36;16	5	y	0.81	21.5	5	35;8	5	y	0.83	19.0	4	29;9	4	y	0.73	29.5	11	45;14	11	y	0.93	27.5	2	43;12	2	y	0.76	19.0	6	31;7	6	y	0.79	34.0	9	52;16	9	y	0.85	28.0	5	47;9	5	y	0.69	22.0	10	36;8	10	y	0.65	26.0	14	43;9	14	y	0.82	28.0	6	44;12	6	y	0.90	28.5	3	45;12	3	y	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
known_NIR_20815	chrX	49715386;49716186	49716084;49719768	-	49715386	49719768	cassetteExon	ENSMUST00000124842.8	known	0.88	36.5	5	36;37	5	y	0.84	26.0	5	35;17	5	y	0.86	24.0	4	29;19	4	y	0.77	36.0	11	45;27	11	y	0.95	38.0	2	43;33	2	y	0.80	24.0	6	31;17	6	y	0.82	40.5	9	52;29	9	y	0.86	31.0	5	47;15	5	y	0.75	29.5	10	36;23	10	y	0.73	37.0	14	43;31	14	y	0.85	34.0	6	44;24	6	y	0.92	36.5	3	45;28	3	y	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
known_NIR_20816	chrX	49716186	49719768	-	49716127	49719768	A3SS	ENSMUST00000143999.8	known	0.70	37	16	37	16	y	0.68	17	8	17	8	y	0.68	19	9	19	9	y	0.66	27	14	27	14	y	0.73	33	12	33	12	y	0.71	17	7	17	7	y	0.64	29	16	29	16	y	0.62	15	9	15	9	y	0.74	23	8	23	8	y	0.78	31	9	31	9	y	0.67	24	12	24	12	y	0.70	28	12	28	12	y	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
known_NIR_20817	chrX	55825154	55833349	+	55799751	55833349	A5SS	ENSMUST00000023854.10	known	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.97	184	5	184	5	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000023092.17	Fhl1	chrX	protein_coding	four and a half LIM domains 1
known_NIR_20818	chrX	55833196	55833349	+	55825154	55833349	A5SS	ENSMUST00000114772.9	known	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.02	4	184	4	184	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023092.17	Fhl1	chrX	protein_coding	four and a half LIM domains 1
known_NIR_20819	chrX	55836010;55836798	55836599;55837204	+	55836010	55837204	cassetteExon	ENSMUST00000023854.10	known	0.00	0.0	1	0;0	1	n	0.00	0.0	1	0;0	1	n	0.16	1.5	8	3;0	8	n	0.00	0.0	2	0;0	2	n	0.05	0.5	9	0;1	9	n	0.00	0.0	5	0;0	5	n	0.05	6.0	126	7;5	126	y	0.00	0.0	3	0;0	3	n	-	-	-	-	-	-	0.00	0.0	2	0;0	2	n	-	-	-	-	-	-	0.00	0.0	1	0;0	1	n	ENSMUSG00000023092.17	Fhl1	chrX	protein_coding	four and a half LIM domains 1
known_NIR_20820	chrX	56102014	56104246	+	56102014	56102251	3pMXE	ENSMUST00000114751.9	known	1.00	34	0	34	0	n	0.91	30	3	30	3	y	0.91	52	5	52	5	y	1.00	51	0	51	0	n	0.89	50	6	50	6	y	1.00	19	0	19	0	n	0.87	34	5	34	5	y	0.85	23	4	23	4	y	0.93	42	3	42	3	y	0.93	42	3	42	3	y	0.80	35	9	35	9	y	0.95	52	3	52	3	y	ENSMUSG00000067873.12	Htatsf1	chrX	protein_coding	HIV TAT specific factor 1
known_NIR_20821	chrX	56432753	56433421	-	56430581	56433421	A3SS	ENSMUST00000140384.8	known	0.46	16	19	16	19	y	0.59	17	12	17	12	y	0.70	21	9	21	9	y	0.41	13	19	13	19	y	0.40	12	18	12	18	y	0.41	11	16	11	16	y	0.57	16	12	16	12	y	0.68	21	10	21	10	y	0.39	12	19	12	19	y	0.65	26	14	26	14	y	0.56	18	14	18	14	y	0.53	21	19	21	19	y	ENSMUSG00000031134.17	Rbmx	chrX	protein_coding	RNA binding motif protein, X chromosome
known_NIR_20822	chrX	56437061	56438212	-	56437058	56438212	A3SS	ENSMUST00000140384.8	known	0.06	1	17	1	17	n	0.40	6	9	6	9	y	0.09	3	31	3	31	y	0.28	8	21	8	21	y	0.13	3	20	3	20	y	0.36	9	16	9	16	y	0.10	3	27	3	27	y	0.03	1	31	1	31	n	0.04	1	26	1	26	n	0.18	5	23	5	23	y	0.05	1	21	1	21	n	0.12	4	28	4	28	y	ENSMUSG00000031134.17	Rbmx	chrX	protein_coding	RNA binding motif protein, X chromosome
known_NIR_20823	chrX	59271153	59281917	-	59271153;59274612	59274508;59281917	ES	ENSMUST00000154051.8	known	0.30	81	188.0	81	227;149	y	0.35	80	151.5	80	161;142	y	0.09	16	170.5	16	184;157	y	0.29	91	228.0	91	239;217	y	0.20	90	364.5	90	401;328	y	0.12	17	121.0	17	124;118	y	0.17	59	279.5	59	314;245	y	0.18	37	167.5	37	188;147	y	0.21	60	221.0	60	229;213	y	0.28	115	293.5	115	328;259	y	0.23	48	165.0	48	163;167	y	0.25	92	282.5	92	317;248	y	ENSMUSG00000062949.14	Atp11c	chrX	protein_coding	ATPase, class VI, type 11C
known_NIR_20824	chrX	59337743	59340549	-	59337743;59339017	59338967;59340549	ES	ENSMUST00000154051.8	known	0.02	1	47.5	1	42;53	n	0.00	0	29.5	0	31;28	n	0.12	6	46.0	6	42;50	y	0.01	1	80.0	1	81;79	n	0.15	18	98.5	18	97;100	y	0.12	4	28.5	4	23;34	y	0.07	6	78.5	6	67;90	y	0.11	6	49.0	6	47;51	y	0.13	8	53.0	8	53;53	y	0.05	5	88.0	5	76;100	y	0.04	2	46.5	2	52;41	y	0.04	3	68.0	3	62;74	y	ENSMUSG00000062949.14	Atp11c	chrX	protein_coding	ATPase, class VI, type 11C
known_NIR_20825	chrX	67748986	67751648	+	67748986;67749529	67749467;67751648	ES	ENSMUST00000088546.12	known	0.88	19	2.5	19	3;2	y	0.72	14	5.5	14	5;6	y	0.74	27	9.5	27	9;10	y	0.69	20	9.0	20	7;11	y	0.81	37	8.5	37	9;8	y	0.64	8	4.5	8	2;7	y	0.73	15	5.5	15	7;4	y	0.65	12	6.5	12	6;7	y	0.84	21	4.0	21	3;5	y	0.81	21	5.0	21	4;6	y	0.79	13	3.5	13	5;2	y	0.81	28	6.5	28	6;7	y	ENSMUSG00000000838.18	Fmr1	chrX	protein_coding	FMRP translational regulator 1
known_NIR_20826	chrX	67754385	67755912	+	67754385	67755837	A3SS	ENSMUST00000088546.12	known	0.21	3	11	3	11	y	0.50	3	3	3	3	n	0.36	8	14	8	14	y	0.21	3	11	3	11	y	0.29	4	10	4	10	y	0.33	3	6	3	6	n	0.38	9	15	9	15	y	0.44	7	9	7	9	y	0.07	1	13	1	13	n	0.36	10	18	10	18	y	0.18	3	14	3	14	y	0.39	11	17	11	17	y	ENSMUSG00000000838.18	Fmr1	chrX	protein_coding	FMRP translational regulator 1
known_NIR_20827	chrX	67805837	67815651	+	67805837;67807615	67807538;67815651	ES	ENSMUST00000069731.12	known	0.29	2	5.0	2	6;4	y	1.00	2	0.0	2	0;0	n	-	-	-	-	-	-	0.44	2	2.5	2	2;3	n	0.37	5	8.5	5	8;9	y	0.00	0	1.5	0	2;1	n	0.35	3	5.5	3	6;5	y	-	-	-	-	-	-	0.67	1	0.5	1	1;0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000062170.13	Fmr1nb	chrX	protein_coding	Fmr1 neighbor
known_NIR_20828	chrX	69506627;69508692	69508609;69510760	-	69506627	69510760	cassetteExon	ENSMUST00000101506.10	known	0.87	19.5	3	24;15	3	y	1.00	28.0	0	29;27	0	n	0.94	87.0	6	97;77	6	y	0.94	31.0	2	26;36	2	y	0.96	52.5	2	55;50	2	y	1.00	49.5	0	50;49	0	n	0.94	46.5	3	52;41	3	y	1.00	35.0	0	34;36	0	n	0.90	27.5	3	35;20	3	y	0.91	41.0	4	40;42	4	y	0.74	25.5	9	23;28	9	y	0.86	37.5	6	38;37	6	y	ENSMUSG00000073139.10	Tmem185a	chrX	protein_coding	transmembrane protein 185A
known_NIR_20829	chrX	69510809	69513724	-	69510967	69513724	A3SS	ENSMUST00000101506.10	known	0.03	1	29	1	29	n	0.09	3	29	3	29	y	0.12	11	80	11	80	y	0.07	3	37	3	37	y	0.17	8	40	8	40	y	0.04	2	44	2	44	y	0.13	6	39	6	39	y	0.08	4	45	4	45	y	0.09	2	21	2	21	y	0.07	4	51	4	51	y	0.14	5	32	5	32	y	0.02	1	45	1	45	n	ENSMUSG00000073139.10	Tmem185a	chrX	protein_coding	transmembrane protein 185A
known_NIR_20830	chrX	69510962	69513724	-	69510809	69513724	A3SS	ENSMUST00000154400.8	known	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.27	4	11	4	11	y	0.50	3	3	3	3	n	0.27	3	8	3	8	y	0.00	0	2	0	2	n	0.45	5	6	5	6	y	0.20	1	4	1	4	n	0.50	2	2	2	2	n	0.50	4	4	4	4	n	0.38	3	5	3	5	n	0.75	3	1	3	1	n	ENSMUSG00000073139.10	Tmem185a	chrX	protein_coding	transmembrane protein 185A
known_NIR_20831	chrX	69510962	69513724	-	69510967	69513724	A3SS	ENSMUST00000101506.10	known	0.00	0	29	0	29	n	0.00	0	29	0	29	n	0.05	4	80	4	80	y	0.07	3	37	3	37	y	0.07	3	40	3	40	y	0.00	0	44	0	44	n	0.11	5	39	5	39	y	0.02	1	45	1	45	n	0.09	2	21	2	21	y	0.07	4	51	4	51	y	0.09	3	32	3	32	y	0.06	3	45	3	45	y	ENSMUSG00000073139.10	Tmem185a	chrX	protein_coding	transmembrane protein 185A
known_NIR_20832	chrX	70413510	70426806	+	70413510;70420516	70420493;70426806	ES	ENSMUST00000146213.8	known	0.91	15	1.5	15	1;2	n	0.85	11	2.0	11	3;1	n	0.93	27	2.0	27	1;3	n	0.83	17	3.5	17	2;5	y	0.74	28	10.0	28	9;11	y	0.74	10	3.5	10	3;4	y	0.68	15	7.0	15	8;6	y	0.87	17	2.5	17	4;1	n	0.73	8	3.0	8	2;4	y	0.79	23	6.0	23	5;7	y	0.82	9	2.0	9	2;2	y	0.88	19	2.5	19	2;3	y	ENSMUSG00000015214.15	Mtmr1	chrX	protein_coding	myotubularin related protein 1
known_NIR_20833	chrX	70420516;70421236	70421210;70426806	+	70420516	70426806	cassetteExon	ENSMUST00000146213.8	known	0.00	0.0	2	0;0	2	n	0.00	0.0	1	0;0	1	n	0.00	0.0	3	0;0	3	n	0.00	0.0	5	0;0	5	n	0.00	0.0	11	0;0	11	n	0.00	0.0	4	0;0	4	n	0.29	2.5	6	3;2	6	y	0.00	0.0	1	0;0	1	n	0.00	0.0	4	0;0	4	n	0.00	0.0	7	0;0	7	n	0.00	0.0	2	0;0	2	n	0.00	0.0	3	0;0	3	n	ENSMUSG00000015214.15	Mtmr1	chrX	protein_coding	myotubularin related protein 1
known_NIR_20834	chrX	70420516;70422670	70422620;70426806	+	70420516	70426806	cassetteExon	ENSMUST00000146213.8	known	0.00	0.0	2	0;0	2	n	0.00	0.0	1	0;0	1	n	0.00	0.0	3	0;0	3	n	0.00	0.0	5	0;0	5	n	0.00	0.0	11	0;0	11	n	0.00	0.0	4	0;0	4	n	0.08	0.5	6	0;1	6	n	0.00	0.0	1	0;0	1	n	0.20	1.0	4	0;2	4	n	0.30	3.0	7	4;2	7	y	0.00	0.0	2	0;0	2	n	0.00	0.0	3	0;0	3	n	ENSMUSG00000015214.15	Mtmr1	chrX	protein_coding	myotubularin related protein 1
known_NIR_20835	chrX	70421236	70426806	+	70413510	70426806	A5SS	ENSMUST00000114601.8	known	0.00	0	15	0	15	n	0.00	0	11	0	11	n	0.00	0	27	0	27	n	0.00	0	17	0	17	n	0.00	0	28	0	28	n	0.00	0	10	0	10	n	0.12	2	15	2	15	y	0.00	0	17	0	17	n	0.00	0	8	0	8	n	0.00	0	23	0	23	n	0.00	0	9	0	9	n	0.00	0	19	0	19	n	ENSMUSG00000015214.15	Mtmr1	chrX	protein_coding	myotubularin related protein 1
known_NIR_20836	chrX	70484751;70493613	70493545;70494217	-	70484751	70494217	cassetteExon	ENSMUST00000080035.11	known	0.69	20.0	9	23;17	9	y	0.86	24.0	4	29;19	4	y	0.90	37.0	4	38;36	4	y	0.76	28.5	9	36;21	9	y	0.76	52.5	17	52;53	17	y	0.78	17.5	5	21;14	5	y	0.79	41.5	11	43;40	11	y	0.83	25.0	5	30;20	5	y	0.74	29.0	10	33;25	10	y	0.70	37.0	16	37;37	16	y	0.80	24.0	6	17;31	6	y	0.69	46.5	21	52;41	21	y	ENSMUSG00000035776.15	Cd99l2	chrX	protein_coding	CD99 antigen-like 2
known_NIR_20837	chrX	70484751;70493613	70493545;70536128	-	70484751;70494279	70494217;70536128	MXE	ENSMUST00000080035.11	known	0.39	11.5	18.0	23;0	9;27	n	0.52	14.5	13.5	29;0	4;23	n	0.49	19.0	19.5	38;0	4;35	n	0.47	18.0	20.5	36;0	9;32	n	0.40	26.0	38.5	52;0	17;60	n	0.51	10.5	10.0	21;0	5;15	n	0.40	22.5	34.0	43;2	11;57	y	0.45	15.0	18.5	30;0	5;32	n	0.46	16.5	19.0	33;0	10;28	n	0.38	18.5	30.5	37;0	16;45	n	0.29	8.5	21.0	17;0	6;36	n	0.40	26.0	39.5	52;0	21;58	n	ENSMUSG00000035776.15	Cd99l2	chrX	protein_coding	CD99 antigen-like 2
known_NIR_20838	chrX	70493613	70536128	-	70493613;70494279	70494217;70536128	ES	ENSMUST00000037391.12	known	0.00	0	22.0	0	17;27	n	0.00	0	21.0	0	19;23	n	0.00	0	35.5	0	36;35	n	0.00	0	26.5	0	21;32	n	0.00	0	56.5	0	53;60	n	0.00	0	14.5	0	14;15	n	0.04	2	48.5	2	40;57	y	0.00	0	26.0	0	20;32	n	0.00	0	26.5	0	25;28	n	0.00	0	41.0	0	37;45	n	0.00	0	33.5	0	31;36	n	0.00	0	49.5	0	41;58	n	ENSMUSG00000035776.15	Cd99l2	chrX	protein_coding	CD99 antigen-like 2
known_NIR_20839	chrX	70493613	70536128	-	70494279	70536128	A3SS&ES	ENSMUST00000114586.9	known	0.00	0	27	0	27	n	0.00	0	23	0	23	n	0.00	0	35	0	35	n	0.00	0	32	0	32	n	0.00	0	60	0	60	n	0.00	0	15	0	15	n	0.03	2	57	2	57	y	0.00	0	32	0	32	n	0.00	0	28	0	28	n	0.00	0	45	0	45	n	0.00	0	36	0	36	n	0.00	0	58	0	58	n	ENSMUSG00000035776.15	Cd99l2	chrX	protein_coding	CD99 antigen-like 2
known_NIR_20840	chrX	70599614	70601663	+	70599614	70601659	A3SS	ENSMUST00000072699.13	known	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.31	4	9	4	9	y	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	ENSMUSG00000015217.12	Hmgb3	chrX	protein_coding	high mobility group box 3
known_NIR_20841	chrX	70599796	70601659	+	70599614	70601659	A5SS	ENSMUST00000072699.13	known	0.67	10	5	10	5	y	0.71	5	2	5	2	n	0.43	10	13	10	13	y	0.75	9	3	9	3	y	0.61	11	7	11	7	y	0.75	9	3	9	3	y	0.50	9	9	9	9	y	0.73	11	4	11	4	y	0.61	11	7	11	7	y	0.74	17	6	17	6	y	0.58	7	5	7	5	y	0.46	6	7	6	7	y	ENSMUSG00000015217.12	Hmgb3	chrX	protein_coding	high mobility group box 3
known_NIR_20842	chrX	70599843	70601659	+	70599614	70601659	A5SS	ENSMUST00000072699.13	known	0.00	0	5	0	5	n	0.50	2	2	2	2	n	0.07	1	13	1	13	n	0.00	0	3	0	3	n	0.22	2	7	2	7	n	0.25	1	3	1	3	n	0.18	2	9	2	9	y	0.20	1	4	1	4	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.17	1	5	1	5	n	0.00	0	7	0	7	n	ENSMUSG00000015217.12	Hmgb3	chrX	protein_coding	high mobility group box 3
known_NIR_20843	chrX	70599843	70601659	+	70599796	70601659	A5SS	ENSMUST00000114582.9	known	0.00	0	10	0	10	n	0.29	2	5	2	5	n	0.09	1	10	1	10	n	0.00	0	9	0	9	n	0.15	2	11	2	11	y	0.10	1	9	1	9	n	0.18	2	9	2	9	y	0.08	1	11	1	11	n	0.00	0	11	0	11	n	0.00	0	17	0	17	n	0.12	1	7	1	7	n	0.00	0	6	0	6	n	ENSMUSG00000015217.12	Hmgb3	chrX	protein_coding	high mobility group box 3
known_NIR_20844	chrX	70600714	70601659	+	70599614	70601659	A5SS	ENSMUST00000072699.13	known	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.07	1	13	1	13	n	0.00	0	3	0	3	n	0.42	5	7	5	7	y	0.40	2	3	2	3	n	0.25	3	9	3	9	y	0.43	3	4	3	4	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.17	1	5	1	5	n	0.00	0	7	0	7	n	ENSMUSG00000015217.12	Hmgb3	chrX	protein_coding	high mobility group box 3
known_NIR_20845	chrX	70600714	70601659	+	70599796	70601659	A5SS	ENSMUST00000114582.9	known	0.09	1	10	1	10	n	0.00	0	5	0	5	n	0.09	1	10	1	10	n	0.00	0	9	0	9	n	0.31	5	11	5	11	y	0.18	2	9	2	9	y	0.25	3	9	3	9	y	0.21	3	11	3	11	y	0.00	0	11	0	11	n	0.00	0	17	0	17	n	0.12	1	7	1	7	n	0.00	0	6	0	6	n	ENSMUSG00000015217.12	Hmgb3	chrX	protein_coding	high mobility group box 3
known_NIR_20846	chrX	70860546	70863674	+	70860305	70863674	A5SS	ENSMUST00000114577.8	known	1.00	88	0	88	0	n	0.98	57	1	57	1	n	0.99	96	1	96	1	n	1.00	90	0	90	0	n	0.99	116	1	116	1	n	1.00	56	0	56	0	n	0.99	96	1	96	1	n	0.99	68	1	68	1	n	1.00	59	0	59	0	n	1.00	92	0	92	0	n	0.98	82	2	82	2	y	1.00	73	0	73	0	n	ENSMUSG00000073131.13	Vma21	chrX	protein_coding	VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)
known_NIR_20847	chrX	70860546;70861313	70861249;70863674	+	70860546	70863674	cassetteExon	ENSMUST00000114576.9	known	0.00	0.0	88	0;0	88	n	0.00	0.0	57	0;0	57	n	0.00	0.0	96	0;0	96	n	0.00	0.0	90	0;0	90	n	0.00	0.0	116	0;0	116	n	0.00	0.0	56	0;0	56	n	0.00	0.0	96	0;0	96	n	0.00	0.0	68	0;0	68	n	0.00	0.0	59	0;0	59	n	0.01	0.5	92	0;1	92	n	0.04	3.0	82	4;2	82	y	0.00	0.0	73	0;0	73	n	ENSMUSG00000073131.13	Vma21	chrX	protein_coding	VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)
known_NIR_20848	chrX	71960452	71961649	-	71960452	71961920	A5SS	ENSMUST00000114551.10	known	0.00	0	30	0	30	n	0.00	0	16	0	16	n	0.00	0	30	0	30	n	0.00	0	23	0	23	n	0.04	2	43	2	43	y	0.00	0	12	0	12	n	0.05	2	38	2	38	y	0.05	1	21	1	21	n	0.00	0	37	0	37	n	0.02	1	64	1	64	n	0.00	0	37	0	37	n	0.00	0	47	0	47	n	ENSMUSG00000031347.13	Cetn2	chrX	protein_coding	centrin 2
known_NIR_20849	chrX	72138688	72140439	-	72138688	72140587	A5SS	ENSMUST00000114524.9	known	0.00	0	2	0	2	n	0.25	2	6	2	6	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.56	5	4	5	4	n	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.33	1	2	1	2	n	0.14	1	6	1	6	n	0.40	4	6	4	6	y	0.03	1	28	1	28	n	0.00	0	3	0	3	n	ENSMUSG00000057836.13	Xlr3a	chrX	protein_coding	X-linked lymphocyte-regulated 3A
known_NIR_20850	chrX	72388518;72394966	72394875;72395415	+	72388518	72395415	cassetteExon	ENSMUST00000114499.8	known	0.29	2.0	5	1;3	5	n	0.71	2.5	1	4;1	1	n	0.50	2.0	2	2;2	2	n	0.50	4.0	4	5;3	4	y	0.46	6.0	7	8;4	7	y	1.00	2.5	0	3;2	0	n	0.73	5.5	2	5;6	2	y	1.00	2.5	0	3;2	0	n	0.40	2.0	3	2;2	3	n	0.43	3.0	4	4;2	4	y	0.75	3.0	1	2;4	1	n	0.54	3.5	3	4;3	3	y	ENSMUSG00000031365.14	Zfp275	chrX	protein_coding	zinc finger protein 275
known_NIR_20851	chrX	72490743	72491566	-	72490743	72496605	A5SS	ENSMUST00000077243.5	known	0.60	12	8	12	8	y	0.85	22	4	22	4	y	0.79	31	8	31	8	y	0.81	17	4	17	4	y	0.91	31	3	31	3	y	0.93	28	2	28	2	y	0.89	41	5	41	5	y	0.57	8	6	8	6	y	0.77	24	7	24	7	y	0.73	40	15	40	15	y	0.76	28	9	28	9	y	0.82	40	9	40	9	y	ENSMUSG00000031371.15	Haus7	chrX	protein_coding	HAUS augmin-like complex, subunit 7
known_NIR_20852	chrX	72492508	72496605	-	72490743	72496605	A3SS	ENSMUST00000077243.5	known	0.78	29	8	29	8	y	0.82	18	4	18	4	y	0.76	25	8	25	8	y	0.83	20	4	20	4	y	0.93	40	3	40	3	y	0.94	34	2	34	2	y	0.90	43	5	43	5	y	0.70	14	6	14	6	y	0.81	30	7	30	7	y	0.80	59	15	59	15	y	0.80	35	9	35	9	y	0.85	51	9	51	9	y	ENSMUSG00000031371.15	Haus7	chrX	protein_coding	HAUS augmin-like complex, subunit 7
known_NIR_20853	chrX	72527368	72534385	+	72527368;72533537	72533474;72534385	ES	ENSMUST00000133394.8	known	0.98	24	0.5	24	1;0	n	1.00	9	0.0	9	0;0	n	0.95	81	4.5	81	5;4	y	1.00	37	0.0	37	0;0	n	0.97	70	2.0	70	1;3	n	1.00	45	0.0	45	0;0	n	0.99	73	0.5	73	0;1	n	0.90	27	3.0	27	4;2	y	1.00	20	0.0	20	0;0	n	0.98	29	0.5	29	1;0	n	0.97	31	1.0	31	1;1	n	0.99	46	0.5	46	1;0	n	ENSMUSG00000031375.18	Bgn	chrX	protein_coding	biglycan
known_NIR_20854	chrX	72825709	72826281	-	72825709	72825904	5pMXE	ENSMUST00000145341.2	known	0.34	37	72	37	72	y	0.29	29	71	29	71	y	0.26	30	86	30	86	y	0.30	49	112	49	112	y	0.24	44	141	44	141	y	0.26	23	65	23	65	y	0.16	37	192	37	192	y	0.31	24	53	24	53	y	0.26	32	93	32	93	y	0.20	43	175	43	175	y	0.15	22	123	22	123	y	0.18	34	154	34	154	y	ENSMUSG00000002010.18	Idh3g	chrX	protein_coding	isocitrate dehydrogenase 3 (NAD+), gamma
known_NIR_20855	chrX	72825709	72826281	-	72825709;72825915	72825904;72826281	ES	ENSMUST00000052761.9	known	0.32	37	77.0	37	72;82	y	0.28	29	74.5	29	71;78	y	0.25	30	89.5	30	86;93	y	0.31	49	108.5	49	112;105	y	0.25	44	133.5	44	141;126	y	0.26	23	64.5	23	65;64	y	0.16	37	190.0	37	192;188	y	0.32	24	52.0	24	53;51	y	0.26	32	90.5	32	93;88	y	0.20	43	168.5	43	175;162	y	0.15	22	120.5	22	123;118	y	0.18	34	158.5	34	154;163	y	ENSMUSG00000002010.18	Idh3g	chrX	protein_coding	isocitrate dehydrogenase 3 (NAD+), gamma
known_NIR_20856	chrX	72826322	72830134	-	72826322	72830381	A5SS	ENSMUST00000052761.9	known	0.08	13	141	13	141	y	0.09	12	120	12	120	y	0.05	7	137	7	137	y	0.08	14	153	14	153	y	0.06	12	179	12	179	y	0.11	13	101	13	101	y	0.06	15	244	15	244	y	0.10	9	81	9	81	y	0.06	9	136	9	136	y	0.07	16	219	16	219	y	0.08	14	155	14	155	y	0.04	10	216	10	216	y	ENSMUSG00000002010.18	Idh3g	chrX	protein_coding	isocitrate dehydrogenase 3 (NAD+), gamma
known_NIR_20857	chrX	72830912	72832444	+	72830912	72832441	A3SS	ENSMUST00000166518.8	known	0.29	333	801	333	801	y	0.31	363	792	363	792	y	0.28	634	1661	634	1661	y	0.30	309	732	309	732	y	0.29	582	1416	582	1416	y	0.27	434	1162	434	1162	y	0.29	525	1294	525	1294	y	0.29	444	1080	444	1080	y	0.29	280	683	280	683	y	0.30	404	948	404	948	y	0.28	336	860	336	860	y	0.31	355	801	355	801	y	ENSMUSG00000002014.13	Ssr4	chrX	protein_coding	signal sequence receptor, delta
known_NIR_20858	chrX	72939653	72939991	-	72939653	72940000	A5SS	ENSMUST00000114405.8	known	0.00	0	24	0	24	n	0.00	0	17	0	17	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.13	4	27	4	27	y	0.00	0	7	0	7	n	0.00	0	19	0	19	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.07	1	14	1	14	n	0.07	1	13	1	13	n	0.00	0	16	0	16	n	ENSMUSG00000031389.18	Arhgap4	chrX	protein_coding	Rho GTPase activating protein 4
known_NIR_20859	chrX	72949469	72950035	-	72949469;72949825	72949763;72950035	ES	ENSMUST00000064376.13	known	0.00	0	9.5	0	8;11	n	0.50	4	4.0	4	3;5	y	0.40	1	1.5	1	3;0	n	0.00	0	6.0	0	9;3	n	0.00	0	7.5	0	6;9	n	0.50	2	2.0	2	2;2	n	0.00	0	6.0	0	4;8	n	0.43	3	4.0	3	4;4	y	0.00	0	10.0	0	11;9	n	0.40	3	4.5	3	4;5	y	0.00	0	6.0	0	4;8	n	0.15	1	5.5	1	3;8	n	ENSMUSG00000031389.18	Arhgap4	chrX	protein_coding	Rho GTPase activating protein 4
known_NIR_20860	chrX	72950494	72954769	-	72950482	72954769	A3SS	ENSMUST00000114405.8	known	0.00	0	1	0	1	n	0.11	1	8	1	8	n	0.18	2	9	2	9	y	0.33	1	2	1	2	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	ENSMUSG00000031389.18	Arhgap4	chrX	protein_coding	Rho GTPase activating protein 4
known_NIR_20861	chrX	72960801	72961449	-	72960796	72961449	A3SS	ENSMUST00000139105.8	known	1.00	20	0	20	0	n	1.00	28	0	28	0	n	0.75	18	6	18	6	y	1.00	20	0	20	0	n	1.00	22	0	22	0	n	1.00	8	0	8	0	n	1.00	30	0	30	0	n	1.00	14	0	14	0	n	1.00	19	0	19	0	n	1.00	32	0	32	0	n	1.00	38	0	38	0	n	1.00	27	0	27	0	n	ENSMUSG00000031388.15	Naa10	chrX	protein_coding	N(alpha)-acetyltransferase 10, NatA catalytic subunit
known_NIR_20862	chrX	72960888	72961449	-	72960801	72961449	A3SS	ENSMUST00000033763.15	known	0.44	16	20	16	20	y	0.24	9	28	9	28	y	0.10	2	18	2	18	y	0.20	5	20	5	20	y	0.39	14	22	14	22	y	0.20	2	8	2	8	y	0.46	26	30	26	30	y	0.26	5	14	5	14	y	0.34	10	19	10	19	y	0.48	29	32	29	32	y	0.36	21	38	21	38	y	0.40	18	27	18	27	y	ENSMUSG00000031388.15	Naa10	chrX	protein_coding	N(alpha)-acetyltransferase 10, NatA catalytic subunit
known_NIR_20863	chrX	72960888	72961449	-	72960892	72961449	A3SS	ENSMUST00000114389.10	known	0.13	16	107	16	107	y	0.07	9	121	9	121	y	0.02	2	93	2	93	y	0.05	5	103	5	103	y	0.10	14	123	14	123	y	0.03	2	65	2	65	y	0.15	26	142	26	142	y	0.10	5	47	5	47	y	0.09	10	100	10	100	y	0.15	29	160	29	160	y	0.12	21	159	21	159	y	0.13	18	117	18	117	y	ENSMUSG00000031388.15	Naa10	chrX	protein_coding	N(alpha)-acetyltransferase 10, NatA catalytic subunit
known_NIR_20864	chrX	72960892	72961449	-	72960796	72961449	A3SS	ENSMUST00000139105.8	known	1.00	107	0	107	0	n	1.00	121	0	121	0	n	0.94	93	6	93	6	y	1.00	103	0	103	0	n	1.00	123	0	123	0	n	1.00	65	0	65	0	n	1.00	142	0	142	0	n	1.00	47	0	47	0	n	1.00	100	0	100	0	n	1.00	160	0	160	0	n	1.00	159	0	159	0	n	1.00	117	0	117	0	n	ENSMUSG00000031388.15	Naa10	chrX	protein_coding	N(alpha)-acetyltransferase 10, NatA catalytic subunit
known_NIR_20865	chrX	72960892	72961449	-	72960801	72961449	A3SS	ENSMUST00000033763.15	known	0.84	107	20	107	20	y	0.81	121	28	121	28	y	0.84	93	18	93	18	y	0.84	103	20	103	20	y	0.85	123	22	123	22	y	0.89	65	8	65	8	y	0.83	142	30	142	30	y	0.77	47	14	47	14	y	0.84	100	19	100	19	y	0.83	160	32	160	32	y	0.81	159	38	159	38	y	0.81	117	27	117	27	y	ENSMUSG00000031388.15	Naa10	chrX	protein_coding	N(alpha)-acetyltransferase 10, NatA catalytic subunit
known_NIR_20866	chrX	72961533	72963360	-	72961533;72963146	72963108;72963360	ES	ENSMUST00000139105.8	known	0.00	0	87.5	0	171;4	n	0.00	0	91.0	0	180;2	n	0.01	1	86.5	1	164;9	n	0.00	0	83.5	0	165;2	n	0.00	0	98.0	0	193;3	n	0.00	0	40.5	0	79;2	n	0.00	0	103.5	0	205;2	n	0.00	0	52.0	0	103;1	n	0.01	1	85.5	1	167;4	n	0.00	0	119.5	0	235;4	n	0.02	2	128.5	2	252;5	y	0.02	2	108.5	2	215;2	y	ENSMUSG00000031388.15	Naa10	chrX	protein_coding	N(alpha)-acetyltransferase 10, NatA catalytic subunit
known_NIR_20867	chrX	72961533	72963360	-	72961533;72963152	72963108;72963360	ES	ENSMUST00000033763.15	known	0.00	0	179.5	0	171;188	n	0.00	0	171.0	0	180;162	n	0.01	1	163.0	1	164;162	n	0.00	0	161.0	0	165;157	n	0.00	0	183.5	0	193;174	n	0.00	0	78.0	0	79;77	n	0.00	0	201.5	0	205;198	n	0.00	0	104.0	0	103;105	n	0.01	1	161.5	1	167;156	n	0.00	0	230.5	0	235;226	n	0.01	2	242.0	2	252;232	y	0.01	2	220.0	2	215;225	y	ENSMUSG00000031388.15	Naa10	chrX	protein_coding	N(alpha)-acetyltransferase 10, NatA catalytic subunit
known_NIR_20868	chrX	72961533	72963360	-	72963152	72963360	A3SS&ES	ENSMUST00000128329.2	known	0.00	0	188	0	188	n	0.00	0	162	0	162	n	0.01	1	162	1	162	n	0.00	0	157	0	157	n	0.00	0	174	0	174	n	0.00	0	77	0	77	n	0.00	0	198	0	198	n	0.00	0	105	0	105	n	0.01	1	156	1	156	n	0.00	0	226	0	226	n	0.01	2	232	2	232	y	0.01	2	225	2	225	y	ENSMUSG00000031389.18	Arhgap4	chrX	protein_coding	Rho GTPase activating protein 4
known_NIR_20869	chrX	72961558	72963108	-	72961533	72963108	A3SS	ENSMUST00000139105.8	known	0.01	1	171	1	171	n	0.00	0	180	0	180	n	0.00	0	164	0	164	n	0.01	2	165	2	165	y	0.00	0	193	0	193	n	0.00	0	79	0	79	n	0.01	2	205	2	205	y	0.00	0	103	0	103	n	0.00	0	167	0	167	n	0.00	0	235	0	235	n	0.00	0	252	0	252	n	0.00	0	215	0	215	n	ENSMUSG00000031388.15	Naa10	chrX	protein_coding	N(alpha)-acetyltransferase 10, NatA catalytic subunit
known_NIR_20870	chrX	72963146	72963360	-	72963152	72963360	A3SS	ENSMUST00000128329.2	known	0.02	4	188	4	188	y	0.01	2	162	2	162	y	0.05	9	162	9	162	y	0.01	2	157	2	157	y	0.02	3	174	3	174	y	0.03	2	77	2	77	y	0.01	2	198	2	198	y	0.01	1	105	1	105	n	0.03	4	156	4	156	y	0.02	4	226	4	226	y	0.02	5	232	5	232	y	0.01	2	225	2	225	y	ENSMUSG00000031389.18	Arhgap4	chrX	protein_coding	Rho GTPase activating protein 4
known_NIR_20871	chrX	72973686	72973793	-	72973686	72973835	A5SS	ENSMUST00000114379.8	known	0.83	5	1	5	1	n	1.00	9	0	9	0	n	1.00	5	0	5	0	n	-	-	-	-	-	-	0.75	6	2	6	2	n	1.00	3	0	3	0	n	0.79	11	3	11	3	y	-	-	-	-	-	-	1.00	5	0	5	0	n	1.00	4	0	4	0	n	1.00	8	0	8	0	n	0.82	9	2	9	2	y	ENSMUSG00000031387.15	Renbp	chrX	protein_coding	renin binding protein
known_NIR_20872	chrX	72991123	72991448	-	72991120	72991448	A3SS	ENSMUST00000033761.13	known	0.27	6	16	6	16	y	0.13	2	13	2	13	y	0.31	12	27	12	27	y	0.16	8	41	8	41	y	0.19	9	38	9	38	y	0.42	11	15	11	15	y	0.09	3	29	3	29	y	0.18	5	23	5	23	y	0.17	4	19	4	19	y	0.18	7	32	7	32	y	0.41	12	17	12	17	y	0.34	16	31	16	31	y	ENSMUSG00000031386.15	Hcfc1	chrX	protein_coding	host cell factor C1
known_NIR_20873	chrX	72992024	72992508	-	72991892	72992508	A3SS	ENSMUST00000033761.13	known	0.35	7	13	7	13	y	0.14	2	12	2	12	y	0.55	24	20	24	20	y	0.13	4	27	4	27	y	0.46	25	29	25	29	y	0.35	7	13	7	13	y	0.15	4	22	4	22	y	0.35	7	13	7	13	y	0.32	12	26	12	26	y	0.36	15	27	15	27	y	0.42	11	15	11	15	y	0.24	9	28	9	28	y	ENSMUSG00000031386.15	Hcfc1	chrX	protein_coding	host cell factor C1
known_NIR_20874	chrX	73057731	73060154	-	73057731;73059107	73059012;73060154	ES	ENSMUST00000068286.12	known	0.01	1	79.5	1	0;159	n	0.05	3	61.5	3	6;117	y	0.02	2	129.5	2	0;259	n	0.00	0	78.0	0	4;152	n	0.00	0	125.0	0	6;244	n	0.03	2	62.5	2	1;124	n	0.02	2	94.5	2	3;186	y	0.04	3	73.0	3	3;143	y	0.05	3	57.5	3	4;111	y	0.04	4	92.0	4	4;180	y	0.05	4	74.5	4	7;142	y	0.00	0	100.0	0	10;190	n	ENSMUSG00000031392.19	Irak1	chrX	protein_coding	interleukin-1 receptor-associated kinase 1
known_NIR_20875	chrX	73057731	73060154	-	73059107	73060154	A3SS	ENSMUST00000114354.10	known	0.01	1	159	1	159	n	0.03	3	117	3	117	y	0.01	2	259	2	259	y	0.00	0	152	0	152	n	0.00	0	244	0	244	n	0.02	2	124	2	124	y	0.01	2	186	2	186	y	0.02	3	143	3	143	y	0.03	3	111	3	111	y	0.02	4	180	4	180	y	0.03	4	142	4	142	y	0.00	0	190	0	190	n	ENSMUSG00000031392.19	Irak1	chrX	protein_coding	interleukin-1 receptor-associated kinase 1
known_NIR_20876	chrX	73060303	73061736	-	73060303;73061036	73060736;73061736	ES	ENSMUST00000149871.8	known	0.06	5	84.5	5	157;12	y	0.14	10	61.0	10	111;11	y	0.11	13	106.5	13	206;7	y	0.08	7	77.0	7	152;2	y	0.04	5	133.0	5	249;17	y	0.10	10	88.0	10	164;12	y	0.06	6	91.5	6	170;13	y	0.07	6	74.0	6	143;5	y	0.03	2	70.0	2	129;11	y	0.10	11	101.0	11	191;11	y	0.06	5	81.0	5	154;8	y	0.05	5	99.0	5	192;6	y	ENSMUSG00000031392.19	Irak1	chrX	protein_coding	interleukin-1 receptor-associated kinase 1
known_NIR_20877	chrX	73060303	73061736	-	73060303;73061117	73060736;73061736	ES	ENSMUST00000114354.10	known	0.04	5	115.5	5	157;74	y	0.11	10	82.0	10	111;53	y	0.07	13	168.5	13	206;131	y	0.05	7	128.0	7	152;104	y	0.03	5	183.0	5	249;117	y	0.08	10	122.5	10	164;81	y	0.04	6	134.0	6	170;98	y	0.05	6	115.5	6	143;88	y	0.02	2	100.5	2	129;72	y	0.07	11	148.0	11	191;105	y	0.04	5	116.5	5	154;79	y	0.03	5	147.0	5	192;102	y	ENSMUSG00000031392.19	Irak1	chrX	protein_coding	interleukin-1 receptor-associated kinase 1
known_NIR_20878	chrX	73060303	73061736	-	73061117	73061736	3pMXE	ENSMUST00000126583.3	known	0.06	5	74	5	74	y	0.16	10	53	10	53	y	0.09	13	131	13	131	y	0.06	7	104	7	104	y	0.04	5	117	5	117	y	0.11	10	81	10	81	y	0.06	6	98	6	98	y	0.06	6	88	6	88	y	0.03	2	72	2	72	y	0.09	11	105	11	105	y	0.06	5	79	5	79	y	0.05	5	102	5	102	y	ENSMUSG00000031392.19	Irak1	chrX	protein_coding	interleukin-1 receptor-associated kinase 1
known_NIR_20879	chrX	73061036	73061736	-	73061117	73061736	A3SS	ENSMUST00000114354.10	known	0.14	12	74	12	74	y	0.17	11	53	11	53	y	0.05	7	131	7	131	y	0.02	2	104	2	104	y	0.13	17	117	17	117	y	0.13	12	81	12	81	y	0.12	13	98	13	98	y	0.05	5	88	5	88	y	0.13	11	72	11	72	y	0.09	11	105	11	105	y	0.09	8	79	8	79	y	0.06	6	102	6	102	y	ENSMUSG00000031392.19	Irak1	chrX	protein_coding	interleukin-1 receptor-associated kinase 1
known_NIR_20880	chrX	73061117;73061623	73061507;73061736	-	73061117	73061736	cassetteExon	ENSMUST00000114354.10	known	0.14	12.5	74	11;14	74	y	0.09	5.5	53	5;6	53	y	0.11	16.0	131	18;14	131	y	0.11	12.5	104	8;17	104	y	0.09	11.0	117	11;11	117	y	0.10	9.0	81	7;11	81	y	0.17	19.5	98	17;22	98	y	0.17	18.5	88	17;20	88	y	0.08	6.0	72	2;10	72	y	0.16	19.5	105	15;24	105	y	0.12	11.0	79	14;8	79	y	0.09	10.0	102	9;11	102	y	ENSMUSG00000031392.19	Irak1	chrX	protein_coding	interleukin-1 receptor-associated kinase 1
known_NIR_20881	chrX	73061623	73061736	-	73060303	73061736	A3SS	ENSMUST00000128436.8	known	0.74	14	5	14	5	y	0.38	6	10	6	10	y	0.52	14	13	14	13	y	0.71	17	7	17	7	y	0.69	11	5	11	5	y	0.52	11	10	11	10	y	0.79	22	6	22	6	y	0.77	20	6	20	6	y	0.83	10	2	10	2	y	0.69	24	11	24	11	y	0.62	8	5	8	5	y	0.69	11	5	11	5	y	ENSMUSG00000031392.19	Irak1	chrX	protein_coding	interleukin-1 receptor-associated kinase 1
known_NIR_20882	chrX	73061623	73061736	-	73061036	73061736	A3SS	ENSMUST00000149871.8	known	0.54	14	12	14	12	y	0.35	6	11	6	11	y	0.67	14	7	14	7	y	0.89	17	2	17	2	y	0.39	11	17	11	17	y	0.48	11	12	11	12	y	0.63	22	13	22	13	y	0.80	20	5	20	5	y	0.48	10	11	10	11	y	0.69	24	11	24	11	y	0.50	8	8	8	8	y	0.65	11	6	11	6	y	ENSMUSG00000031392.19	Irak1	chrX	protein_coding	interleukin-1 receptor-associated kinase 1
known_NIR_20883	chrX	73064667	73065791	-	73064667;73065569	73065455;73065791	ES	ENSMUST00000114354.10	known	0.03	3	96.5	3	96;97	y	0.01	1	77.5	1	79;76	n	0.03	8	227.0	8	236;218	y	0.01	1	146.0	1	168;124	n	0.02	4	224.0	4	237;211	y	0.00	0	119.5	0	133;106	n	0.01	1	180.0	1	195;165	n	0.01	1	127.0	1	138;116	n	0.02	2	109.5	2	130;89	y	0.00	0	181.5	0	187;176	n	0.01	1	107.5	1	107;108	n	0.01	1	170.0	1	183;157	n	ENSMUSG00000031392.19	Irak1	chrX	protein_coding	interleukin-1 receptor-associated kinase 1
known_NIR_20884	chrX	73065987	73066079	-	73065855	73066079	A3SS	ENSMUST00000114354.10	known	0.06	6	89	6	89	y	0.01	1	71	1	71	n	0.03	7	248	7	248	y	0.03	4	113	4	113	y	0.04	8	191	8	191	y	0.03	4	122	4	122	y	0.06	9	134	9	134	y	0.06	8	117	8	117	y	0.02	1	63	1	63	n	0.03	6	175	6	175	y	0.03	4	114	4	114	y	0.01	2	152	2	152	y	ENSMUSG00000031392.19	Irak1	chrX	protein_coding	interleukin-1 receptor-associated kinase 1
known_NIR_20885	chrX	73066267	73066455	-	73066270	73066455	A3SS	ENSMUST00000114354.10	known	0.34	26	51	26	51	y	0.29	22	53	22	53	y	0.30	65	154	65	154	y	0.23	27	88	27	88	y	0.30	48	112	48	112	y	0.35	38	72	38	72	y	0.34	50	98	50	98	y	0.35	42	79	42	79	y	0.31	23	52	23	52	y	0.29	47	116	47	116	y	0.23	23	75	23	75	y	0.35	50	94	50	94	y	ENSMUSG00000031392.19	Irak1	chrX	protein_coding	interleukin-1 receptor-associated kinase 1
known_NIR_20886	chrX	73066803	73066972	-	73066671	73066972	A3SS	ENSMUST00000149809.8	known	0.96	65	3	65	3	y	1.00	62	0	62	0	n	0.95	128	7	128	7	y	1.00	81	0	81	0	n	1.00	118	0	118	0	n	0.94	103	6	103	6	y	0.98	95	2	95	2	y	0.99	76	1	76	1	n	0.94	44	3	44	3	y	0.99	91	1	91	1	n	0.97	64	2	64	2	y	1.00	97	0	97	0	n	ENSMUSG00000031392.19	Irak1	chrX	protein_coding	interleukin-1 receptor-associated kinase 1
known_NIR_20887	chrX	73080938	73129116	-	73080938	73123515	A5SS&ES	ENSMUST00000170481.9	known	0.18	3	14	3	14	y	0.14	2	12	2	12	y	0.25	8	24	8	24	y	0.31	5	11	5	11	y	0.21	6	22	6	22	y	0.23	3	10	3	10	y	0.20	6	24	6	24	y	0.26	5	14	5	14	y	0.16	4	21	4	21	y	0.50	9	9	9	9	y	0.13	2	13	2	13	y	0.18	3	14	3	14	y	ENSMUSG00000031393.17	Mecp2	chrX	protein_coding	methyl CpG binding protein 2
known_NIR_20888	chrX	73080938	73129116	-	73080938;73123638	73123515;73129116	ES	ENSMUST00000100750.10	known	0.26	3	8.5	3	14;3	y	0.18	2	9.0	2	12;6	y	0.31	8	17.5	8	24;11	y	0.31	5	11.0	5	11;11	y	0.26	6	17.5	6	22;13	y	0.25	3	9.0	3	10;8	y	0.24	6	19.5	6	24;15	y	0.33	5	10.0	5	14;6	y	0.22	4	14.0	4	21;7	y	0.45	9	11.0	9	9;13	y	0.16	2	10.5	2	13;8	y	0.21	3	11.5	3	14;9	y	ENSMUSG00000031393.17	Mecp2	chrX	protein_coding	methyl CpG binding protein 2
known_NIR_20889	chrX	73269940	73270023	-	73269940	73270467	A5SS	ENSMUST00000144429.8	known	0.00	0	7	0	7	n	0.00	0	20	0	20	n	0.00	0	39	0	39	n	0.00	0	5	0	5	n	0.00	0	34	0	34	n	0.00	0	17	0	17	n	0.08	2	23	2	23	y	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	20	0	20	n	ENSMUSG00000031328.17	Flna	chrX	protein_coding	filamin, alpha
known_NIR_20890	chrX	73274359	73276755	-	73274359;73276596	73276573;73276755	ES	ENSMUST00000144429.8	known	0.59	5	3.5	5	3;4	y	0.83	5	1.0	5	1;1	n	0.86	15	2.5	15	3;2	y	0.62	4	2.5	4	2;3	n	0.71	11	4.5	11	4;5	y	0.89	4	0.5	4	0;1	n	0.75	21	7.0	21	7;7	y	1.00	7	0.0	7	0;0	n	1.00	6	0.0	6	0;0	n	1.00	3	0.0	3	0;0	n	0.67	6	3.0	6	4;2	y	0.86	6	1.0	6	2;0	n	ENSMUSG00000031328.17	Flna	chrX	protein_coding	filamin, alpha
known_NIR_20891	chrX	73276868	73278962	-	73278878	73278962	A3SS&ES	ENSMUST00000144429.8	known	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.20	2	8	2	8	y	0.00	0	5	0	5	n	0.00	0	19	0	19	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000031328.17	Flna	chrX	protein_coding	filamin, alpha
known_NIR_20892	chrX	73299482;73300530	73300484;73304388	+	73299482	73304388	cassetteExon	ENSMUST00000119197.8	known	0.97	28.5	1	56;1	1	n	1.00	30.5	0	56;5	0	n	0.94	49.0	3	90;8	3	y	1.00	37.0	0	65;9	0	n	1.00	37.5	0	70;5	0	n	1.00	20.5	0	38;3	0	n	1.00	43.0	0	81;5	0	n	1.00	22.5	0	43;2	0	n	0.93	25.5	2	44;7	2	y	0.97	33.0	1	61;5	1	n	1.00	33.0	0	56;10	0	n	1.00	28.5	0	52;5	0	n	ENSMUSG00000001964.15	Emd	chrX	protein_coding	emerin
known_NIR_20893	chrX	73300530	73304388	+	73300530	73300613	3pMXE	ENSMUST00000002029.13	known	0.02	1	56	1	56	n	0.07	5	64	5	64	y	0.09	8	84	8	84	y	0.12	9	66	9	66	y	0.06	5	79	5	79	y	0.06	3	45	3	45	y	0.05	5	86	5	86	y	0.04	2	45	2	45	y	0.17	7	35	7	35	y	0.06	5	73	5	73	y	0.13	10	65	10	65	y	0.08	5	55	5	55	y	ENSMUSG00000001964.15	Emd	chrX	protein_coding	emerin
known_NIR_20894	chrX	73314484	73314585	+	73314480	73314585	A5SS	ENSMUST00000008826.14	known	0.00	0	242	0	242	n	0.00	0	224	0	224	n	0.00	0	333	0	333	n	0.00	0	246	0	246	n	0.02	7	297	7	297	y	0.01	1	189	1	189	n	0.00	0	360	0	360	n	0.00	0	189	0	189	n	0.00	0	200	0	200	n	0.01	3	304	3	304	y	0.00	1	292	1	292	n	0.00	0	278	0	278	n	ENSMUSG00000008682.14	Rpl10	chrX	protein_coding	ribosomal protein L10
known_NIR_20895	chrX	73314630	73314967	+	73314630	73315266	A3SS	ENSMUST00000008826.14	known	0.00	1	3325	1	3325	n	0.00	3	3303	3	3303	y	0.00	2	4882	2	4882	y	0.00	4	3409	4	3409	y	0.00	3	4027	3	4027	y	0.00	0	2322	0	2322	n	0.00	7	4274	7	4274	y	0.00	4	2511	4	2511	y	0.00	2	2936	2	2936	y	0.00	2	4062	2	4062	y	0.00	4	3508	4	3508	y	0.00	0	4065	0	4065	n	ENSMUSG00000008682.14	Rpl10	chrX	protein_coding	ribosomal protein L10
known_NIR_20896	chrX	73315923	73316521	+	73315923	73316278	3pMXE	ENSMUST00000149171.8	known	0.00	9	4120	9	4120	y	0.00	5	4159	5	4159	y	0.00	18	5344	18	5344	y	0.00	9	3374	9	3374	y	0.00	10	4970	10	4970	y	0.00	1	2814	1	2814	n	0.00	8	4889	8	4889	y	0.00	12	2786	12	2786	y	0.00	7	3436	7	3436	y	0.00	7	5047	7	5047	y	0.00	9	4445	9	4445	y	0.00	10	4859	10	4859	y	ENSMUSG00000008682.14	Rpl10	chrX	protein_coding	ribosomal protein L10
known_NIR_20897	chrX	73315923	73316521	+	73315923;73316440	73316278;73316521	ES	ENSMUST00000008826.14	known	0.00	9	4206.0	9	4120;4292	y	0.00	5	4395.0	5	4159;4631	y	0.00	18	5476.5	18	5344;5609	y	0.00	9	3407.5	9	3374;3441	y	0.00	10	5138.0	10	4970;5306	y	0.00	1	2848.0	1	2814;2882	n	0.00	8	5096.5	8	4889;5304	y	0.00	12	2799.0	12	2786;2812	y	0.00	7	3431.0	7	3436;3426	y	0.00	7	5128.0	7	5047;5209	y	0.00	9	4654.5	9	4445;4864	y	0.00	10	4938.0	10	4859;5017	y	ENSMUSG00000008682.14	Rpl10	chrX	protein_coding	ribosomal protein L10
known_NIR_20898	chrX	73325651	73326324	+	73325646	73326324	A5SS	ENSMUST00000146260.2	known	0.00	0	14	0	14	n	0.13	2	13	2	13	y	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.18	4	18	4	18	y	0.29	2	5	2	5	n	0.00	0	8	0	8	n	0.11	1	8	1	8	n	0.00	0	7	0	7	n	0.30	3	7	3	7	y	0.06	1	15	1	15	n	0.35	6	11	6	11	y	ENSMUSG00000009995.18	Taz	chrX	protein_coding	tafazzin
known_NIR_20899	chrX	73327623	73331628	+	73327623	73331625	A3SS	ENSMUST00000069722.13	known	0.00	0	94	0	94	n	0.07	6	78	6	78	y	0.02	1	65	1	65	n	0.03	3	98	3	98	y	0.04	4	101	4	101	y	0.06	3	50	3	50	y	0.04	6	131	6	131	y	0.00	0	62	0	62	n	0.04	3	70	3	70	y	0.00	0	114	0	114	n	0.06	6	97	6	97	y	0.04	4	101	4	101	y	ENSMUSG00000009995.18	Taz	chrX	protein_coding	tafazzin
known_NIR_20900	chrX	73327623	73331784	+	73327623	73331625	3pMXE	ENSMUST00000156880.8	known	0.00	0	94	0	94	n	0.01	1	78	1	78	n	0.03	2	65	2	65	y	0.00	0	98	0	98	n	0.01	1	101	1	101	n	0.02	1	50	1	50	n	0.00	0	131	0	131	n	0.00	0	62	0	62	n	0.00	0	70	0	70	n	0.00	0	114	0	114	n	0.02	2	97	2	97	y	0.02	2	101	2	101	y	ENSMUSG00000009995.18	Taz	chrX	protein_coding	tafazzin
known_NIR_20901	chrX	73327623	73331784	+	73327623;73331705	73331625;73331784	ES	ENSMUST00000069722.13	known	0.00	0	89.0	0	94;84	n	0.01	1	85.0	1	78;92	n	0.03	2	63.5	2	65;62	y	0.00	0	91.0	0	98;84	n	0.01	1	99.5	1	101;98	n	0.02	1	48.0	1	50;46	n	0.00	0	127.5	0	131;124	n	0.00	0	63.0	0	62;64	n	0.00	0	71.0	0	70;72	n	0.00	0	102.0	0	114;90	n	0.02	2	101.0	2	97;105	y	0.02	2	104.0	2	101;107	y	ENSMUSG00000009995.18	Taz	chrX	protein_coding	tafazzin
known_NIR_20902	chrX	73327623	73331784	+	73331705	73331784	5pMXE	ENSMUST00000153459.2	known	0.00	0	84	0	84	n	0.01	1	92	1	92	n	0.03	2	62	2	62	y	0.00	0	84	0	84	n	0.01	1	98	1	98	n	0.02	1	46	1	46	n	0.00	0	124	0	124	n	0.00	0	64	0	64	n	0.00	0	72	0	72	n	0.00	0	90	0	90	n	0.02	2	105	2	105	y	0.02	2	107	2	107	y	ENSMUSG00000009995.18	Taz	chrX	protein_coding	tafazzin
known_NIR_20903	chrX	73327623;73331705	73331628;73331784	+	73327623	73331784	cassetteExon	ENSMUST00000132437.8	known	1.00	42.0	0	0;84	0	n	0.98	49.0	1	6;92	1	n	0.94	31.5	2	1;62	2	n	1.00	43.5	0	3;84	0	n	0.98	51.0	1	4;98	1	n	0.96	24.5	1	3;46	1	n	1.00	65.0	0	6;124	0	n	1.00	32.0	0	0;64	0	n	1.00	37.5	0	3;72	0	n	1.00	45.0	0	0;90	0	n	0.97	55.5	2	6;105	2	y	0.97	55.5	2	4;107	2	y	ENSMUSG00000009995.18	Taz	chrX	protein_coding	tafazzin
known_NIR_20904	chrX	73331705	73332057	+	73331705	73331784	A3SS	ENSMUST00000134936.9	known	0.00	0	84	0	84	n	0.00	0	92	0	92	n	0.00	0	62	0	62	n	0.00	0	84	0	84	n	0.02	2	98	2	98	y	0.00	0	46	0	46	n	0.00	0	124	0	124	n	0.00	0	64	0	64	n	0.00	0	72	0	72	n	0.00	0	90	0	90	n	0.00	0	105	0	105	n	0.00	0	107	0	107	n	ENSMUSG00000009995.18	Taz	chrX	protein_coding	tafazzin
known_NIR_20905	chrX	73331705	73332057	+	73331705;73331825	73331784;73332057	ES	ENSMUST00000069722.13	known	0.00	0	69.5	0	84;55	n	0.00	0	76.0	0	92;60	n	0.00	0	54.0	0	62;46	n	0.00	0	66.5	0	84;49	n	0.02	2	86.0	2	98;74	y	0.00	0	40.0	0	46;34	n	0.00	0	109.5	0	124;95	n	0.00	0	56.5	0	64;49	n	0.00	0	59.5	0	72;47	n	0.00	0	81.5	0	90;73	n	0.00	0	89.5	0	105;74	n	0.00	0	83.5	0	107;60	n	ENSMUSG00000009995.18	Taz	chrX	protein_coding	tafazzin
known_NIR_20906	chrX	73331825	73332054	+	73331825	73332057	A3SS	ENSMUST00000069722.13	known	0.14	9	55	9	55	y	0.15	11	60	11	60	y	0.15	8	46	8	46	y	0.16	9	49	9	49	y	0.14	12	74	12	74	y	0.23	10	34	10	34	y	0.17	19	95	19	95	y	0.02	1	49	1	49	n	0.22	13	47	13	47	y	0.11	9	73	9	73	y	0.11	9	74	9	74	y	0.17	12	60	12	60	y	ENSMUSG00000009995.18	Taz	chrX	protein_coding	tafazzin
known_NIR_20907	chrX	73332119	73332711	+	73332119	73332268	3pMXE	ENSMUST00000134936.9	known	0.66	42	22	42	22	y	0.59	32	22	32	22	y	0.38	15	25	15	25	y	0.62	38	23	38	23	y	0.56	45	35	45	35	y	0.50	14	14	14	14	y	0.52	51	47	51	47	y	0.53	25	22	25	22	y	0.75	38	13	38	13	y	0.58	37	27	37	27	y	0.76	50	16	50	16	y	0.65	46	25	46	25	y	ENSMUSG00000009995.18	Taz	chrX	protein_coding	tafazzin
known_NIR_20908	chrX	73332119	73332711	+	73332119;73332320	73332268;73332711	ES	ENSMUST00000069722.13	known	0.67	42	20.5	42	22;19	y	0.60	32	21.0	32	22;20	y	0.39	15	23.0	15	25;21	y	0.63	38	22.5	38	23;22	y	0.58	45	32.0	45	35;29	y	0.55	14	11.5	14	14;9	y	0.51	51	49.5	51	47;52	y	0.55	25	20.5	25	22;19	y	0.70	38	16.5	38	13;20	y	0.56	37	28.5	37	27;30	y	0.73	50	18.5	50	16;21	y	0.67	46	23.0	46	25;21	y	ENSMUSG00000009995.18	Taz	chrX	protein_coding	tafazzin
known_NIR_20909	chrX	73332119	73332711	+	73332625	73332711	A5SS	ENSMUST00000156212.8	known	0.91	42	4	42	4	y	0.86	32	5	32	5	y	0.88	15	2	15	2	y	0.83	38	8	38	8	y	0.76	45	14	45	14	y	0.74	14	5	14	5	y	0.69	51	23	51	23	y	0.81	25	6	25	6	y	0.72	38	15	38	15	y	0.73	37	14	37	14	y	0.74	50	18	50	18	y	0.71	46	19	46	19	y	ENSMUSG00000009995.18	Taz	chrX	protein_coding	tafazzin
known_NIR_20910	chrX	73332119;73332625	73332268;73332711	+	73332119	73332711	cassetteExon	ENSMUST00000124200.8	known	0.24	13.0	42	22;4	42	y	0.30	13.5	32	22;5	32	y	0.47	13.5	15	25;2	15	y	0.29	15.5	38	23;8	38	y	0.35	24.5	45	35;14	45	y	0.40	9.5	14	14;5	14	y	0.41	35.0	51	47;23	51	y	0.36	14.0	25	22;6	25	y	0.27	14.0	38	13;15	38	y	0.36	20.5	37	27;14	37	y	0.25	17.0	50	16;18	50	y	0.32	22.0	46	25;19	46	y	ENSMUSG00000009995.18	Taz	chrX	protein_coding	tafazzin
known_NIR_20911	chrX	73332320	73332711	+	73332625	73332711	A5SS	ENSMUST00000156212.8	known	0.83	19	4	19	4	y	0.80	20	5	20	5	y	0.91	21	2	21	2	y	0.73	22	8	22	8	y	0.67	29	14	29	14	y	0.64	9	5	9	5	y	0.69	52	23	52	23	y	0.76	19	6	19	6	y	0.57	20	15	20	15	y	0.68	30	14	30	14	y	0.54	21	18	21	18	y	0.53	21	19	21	19	y	ENSMUSG00000009995.18	Taz	chrX	protein_coding	tafazzin
known_NIR_20912	chrX	73332320;73332625	73332535;73332711	+	73332320	73332711	cassetteExon	ENSMUST00000069722.13	known	0.10	2.0	19	0;4	19	n	0.11	2.5	20	0;5	20	n	0.05	1.0	21	0;2	21	n	0.15	4.0	22	0;8	22	n	0.19	7.0	29	0;14	29	n	0.22	2.5	9	0;5	9	n	0.18	11.5	52	0;23	52	n	0.14	3.0	19	0;6	19	n	0.29	8.0	20	1;15	20	n	0.19	7.0	30	0;14	30	n	0.30	9.0	21	0;18	21	n	0.33	10.5	21	2;19	21	y	ENSMUSG00000009995.18	Taz	chrX	protein_coding	tafazzin
known_NIR_20913	chrX	73332320;73332625	73332590;73332711	+	73332320	73332711	cassetteExon	ENSMUST00000069722.13	known	0.10	2.0	19	0;4	19	n	0.11	2.5	20	0;5	20	n	0.05	1.0	21	0;2	21	n	0.19	5.0	22	2;8	22	y	0.23	8.5	29	3;14	29	y	0.22	2.5	9	0;5	9	n	0.21	14.0	52	5;23	52	y	0.16	3.5	19	1;6	19	n	0.29	8.0	20	1;15	20	n	0.19	7.0	30	0;14	30	n	0.30	9.0	21	0;18	21	n	0.32	10.0	21	1;19	21	n	ENSMUSG00000009995.18	Taz	chrX	protein_coding	tafazzin
known_NIR_20914	chrX	73341355;73342388	73342326;73343856	+	73341355	73343856	cassetteExon	ENSMUST00000019231.12	known	0.00	0.5	103	0;1	103	n	0.02	1.5	80	1;2	80	n	0.00	0.0	156	0;0	156	n	0.00	0.5	132	0;1	132	n	0.00	0.0	182	0;0	182	n	0.00	0.0	86	0;0	86	n	0.00	0.5	148	1;0	148	n	0.01	0.5	86	1;0	86	n	0.00	0.0	124	0;0	124	n	0.02	2.5	147	2;3	147	y	0.00	0.5	105	0;1	105	n	0.00	0.5	149	1;0	149	n	ENSMUSG00000019087.14	Atp6ap1	chrX	protein_coding	ATPase, H+ transporting, lysosomal accessory protein 1
known_NIR_20915	chrX	73344294	73345968	+	73345627	73345968	A5SS&ES	ENSMUST00000019231.12	known	0.00	0	119	0	119	n	0.00	0	99	0	99	n	0.00	0	192	0	192	n	0.00	0	144	0	144	n	0.00	0	186	0	186	n	0.00	0	80	0	80	n	0.00	0	187	0	187	n	0.00	0	99	0	99	n	0.00	0	84	0	84	n	0.00	0	202	0	202	n	0.06	8	118	8	118	y	0.00	0	154	0	154	n	ENSMUSG00000019087.14	Atp6ap1	chrX	protein_coding	ATPase, H+ transporting, lysosomal accessory protein 1
known_NIR_20916	chrX	73344964	73345542	+	73344970	73345542	A5SS	ENSMUST00000019231.12	known	0.05	6	126	6	126	y	0.01	1	90	1	90	n	0.01	1	185	1	185	n	0.02	4	158	4	158	y	0.02	3	190	3	190	y	0.00	0	85	0	85	n	0.02	3	177	3	177	y	0.02	2	105	2	105	y	0.00	0	111	0	111	n	0.03	5	164	5	164	y	0.01	1	146	1	146	n	0.02	4	186	4	186	y	ENSMUSG00000019087.14	Atp6ap1	chrX	protein_coding	ATPase, H+ transporting, lysosomal accessory protein 1
known_NIR_20917	chrX	73347192	73347337	+	73347192	73347403	A3SS	ENSMUST00000019231.12	known	0.00	0	238	0	238	n	0.00	0	233	0	233	n	0.00	0	281	0	281	n	0.01	1	188	1	188	n	0.00	0	298	0	298	n	0.00	0	117	0	117	n	0.00	0	238	0	238	n	0.00	0	143	0	143	n	0.01	1	159	1	159	n	0.00	0	252	0	252	n	0.00	0	219	0	219	n	0.01	2	214	2	214	y	ENSMUSG00000019087.14	Atp6ap1	chrX	protein_coding	ATPase, H+ transporting, lysosomal accessory protein 1
known_NIR_20918	chrX	73396104	73396451	-	73396104	73396480	A5SS	ENSMUST00000015433.4	known	0.05	6	109	6	109	y	0.04	4	107	4	107	y	0.04	4	91	4	91	y	0.01	1	96	1	96	n	0.01	2	137	2	137	y	0.13	6	40	6	40	y	0.07	8	110	8	110	y	0.02	1	63	1	63	n	0.09	11	106	11	106	y	0.05	7	135	7	135	y	0.04	5	108	5	108	y	0.06	8	120	8	120	y	ENSMUSG00000015289.5	Lage3	chrX	protein_coding	L antigen family, member 3
known_NIR_20919	chrX	73411515	73412022	-	73411515;73411864	73411759;73412022	ES	ENSMUST00000155676.8	known	0.02	3	153.0	3	162;144	y	0.01	1	139.5	1	149;130	n	0.02	5	255.5	5	281;230	y	0.03	4	145.5	4	156;135	y	0.05	10	182.0	10	186;178	y	0.01	1	119.0	1	126;112	n	0.01	1	190.0	1	211;169	n	0.02	2	117.5	2	119;116	y	0.01	1	126.5	1	143;110	n	0.02	5	204.5	5	220;189	y	0.02	3	170.0	3	189;151	y	0.01	1	158.5	1	163;154	n	ENSMUSG00000015290.16	Ubl4a	chrX	protein_coding	ubiquitin-like 4A
known_NIR_20920	chrX	73411515	73412022	-	73411864	73412022	A3SS&ES	ENSMUST00000015434.15	known	0.02	3	144	3	144	y	0.01	1	130	1	130	n	0.02	5	230	5	230	y	0.03	4	135	4	135	y	0.05	10	178	10	178	y	0.01	1	112	1	112	n	0.01	1	169	1	169	n	0.02	2	116	2	116	y	0.01	1	110	1	110	n	0.03	5	189	5	189	y	0.02	3	151	3	151	y	0.01	1	154	1	154	n	ENSMUSG00000015290.16	Ubl4a	chrX	protein_coding	ubiquitin-like 4A
known_NIR_20921	chrX	73411577	73411759	-	73411515	73411759	A3SS	ENSMUST00000155676.8	known	0.00	0	162	0	162	n	0.01	2	149	2	149	y	0.00	0	281	0	281	n	0.00	0	156	0	156	n	0.00	0	186	0	186	n	0.00	0	126	0	126	n	0.00	0	211	0	211	n	0.02	2	119	2	119	y	0.00	0	143	0	143	n	0.00	0	220	0	220	n	0.00	0	189	0	189	n	0.00	0	163	0	163	n	ENSMUSG00000015290.16	Ubl4a	chrX	protein_coding	ubiquitin-like 4A
known_NIR_20922	chrX	73414617	73416797	-	73414617	73416220	A5SS&ES	ENSMUST00000114146.8	known	0.00	0	4	0	4	n	0.25	3	9	3	9	y	0.22	5	18	5	18	y	0.06	1	17	1	17	n	0.10	2	18	2	18	y	0.00	0	7	0	7	n	0.16	3	16	3	16	y	0.10	1	9	1	9	n	0.30	3	7	3	7	y	0.00	0	9	0	9	n	0.08	1	12	1	12	n	0.00	0	12	0	12	n	ENSMUSG00000032806.14	Slc10a3	chrX	protein_coding	solute carrier family 10 (sodium/bile acid cotransporter family), member 3
known_NIR_20923	chrX	73414617	73416797	-	73414617;73416288	73416220;73416797	ES	ENSMUST00000178691.2	known	0.00	0	5.5	0	4;7	n	0.27	3	8.0	3	9;7	y	0.24	5	16.0	5	18;14	y	0.06	1	15.5	1	17;14	n	0.11	2	16.0	2	18;14	y	0.00	0	5.5	0	7;4	n	0.15	3	17.0	3	16;18	y	0.14	1	6.0	1	9;3	n	0.35	3	5.5	3	7;4	y	0.00	0	8.0	0	9;7	n	0.08	1	12.0	1	12;12	n	0.00	0	15.0	0	12;18	n	ENSMUSG00000015290.16	Ubl4a	chrX	protein_coding	ubiquitin-like 4A
known_NIR_20924	chrX	73431412	73434080	-	73431357	73434080	A3SS	ENSMUST00000114143.10	known	0.00	0	51	0	51	n	0.00	0	51	0	51	n	0.05	3	63	3	63	y	0.04	2	43	2	43	y	0.00	0	81	0	81	n	0.00	0	59	0	59	n	0.00	0	58	0	58	n	0.00	0	49	0	49	n	0.02	1	51	1	51	n	0.00	0	67	0	67	n	0.00	0	52	0	52	n	0.00	0	55	0	55	n	ENSMUSG00000031399.16	Fam3a	chrX	protein_coding	family with sequence similarity 3, member A
known_NIR_20925	chrX	73437011	73476411	+	73437011;73471480	73471368;73476411	ES	ENSMUST00000144947.8	known	0.00	0	19.0	0	2;36	n	0.09	1	10.5	1	0;21	n	0.00	0	46.5	0	4;89	n	0.00	0	33.5	0	4;63	n	0.00	0	45.0	0	4;86	n	0.03	1	31.0	1	1;61	n	0.07	2	26.5	2	2;51	y	0.00	0	24.0	0	5;43	n	0.13	3	20.5	3	1;40	n	0.00	0	29.0	0	3;55	n	0.08	1	12.0	1	0;24	n	0.04	1	26.0	1	8;44	n	ENSMUSG00000004221.17	Ikbkg	chrX	protein_coding	inhibitor of kappaB kinase gamma
known_NIR_20926	chrX	73437011;73471508	73471368;73476411	+	73437011	73476411	cassetteExon	ENSMUST00000164101.8	known	1.00	2.0	0	2;2	0	n	0.80	4.0	1	0;8	1	n	1.00	13.5	0	4;23	0	n	1.00	5.0	0	4;6	0	n	1.00	14.5	0	4;25	0	n	0.87	6.5	1	1;12	1	n	0.84	10.5	2	2;19	2	y	1.00	5.5	0	5;6	0	n	0.62	5.0	3	1;9	3	n	1.00	7.5	0	3;12	0	n	0.82	4.5	1	0;9	1	n	0.90	9.5	1	8;11	1	n	ENSMUSG00000004221.17	Ikbkg	chrX	protein_coding	inhibitor of kappaB kinase gamma
known_NIR_20927	chrX	73468316	73471368	+	73437011	73471368	A5SS	ENSMUST00000144947.8	known	0.89	16	2	16	2	y	1.00	8	0	8	0	n	0.94	60	4	60	4	y	0.86	25	4	25	4	y	0.92	48	4	48	4	y	0.94	15	1	15	1	n	0.94	30	2	30	2	y	0.86	31	5	31	5	y	0.92	12	1	12	1	n	0.93	38	3	38	3	y	1.00	17	0	17	0	n	0.78	28	8	28	8	y	ENSMUSG00000004221.17	Ikbkg	chrX	protein_coding	inhibitor of kappaB kinase gamma
known_NIR_20928	chrX	73468316	73471368	+	73468321	73471368	A5SS	ENSMUST00000114128.8	known	0.52	16	15	16	15	y	0.38	8	13	8	13	y	0.45	60	72	60	72	y	0.39	25	39	25	39	y	0.45	48	58	48	58	y	0.29	15	36	15	36	y	0.51	30	29	30	29	y	0.63	31	18	31	18	y	0.33	12	24	12	24	y	0.48	38	41	38	41	y	0.40	17	25	17	25	y	0.42	28	38	28	38	y	ENSMUSG00000004221.17	Ikbkg	chrX	protein_coding	inhibitor of kappaB kinase gamma
known_NIR_20929	chrX	73468321	73471368	+	73437011	73471368	A5SS	ENSMUST00000144947.8	known	0.88	15	2	15	2	y	1.00	13	0	13	0	n	0.95	72	4	72	4	y	0.91	39	4	39	4	y	0.94	58	4	58	4	y	0.97	36	1	36	1	n	0.94	29	2	29	2	y	0.78	18	5	18	5	y	0.96	24	1	24	1	n	0.93	41	3	41	3	y	1.00	25	0	25	0	n	0.83	38	8	38	8	y	ENSMUSG00000004221.17	Ikbkg	chrX	protein_coding	inhibitor of kappaB kinase gamma
known_NIR_20930	chrX	73471508	73476411	+	73471480	73476411	A5SS	ENSMUST00000144947.8	known	0.05	2	36	2	36	y	0.28	8	21	8	21	y	0.21	23	89	23	89	y	0.09	6	63	6	63	y	0.23	25	86	25	86	y	0.16	12	61	12	61	y	0.27	19	51	19	51	y	0.12	6	43	6	43	y	0.18	9	40	9	40	y	0.18	12	55	12	55	y	0.27	9	24	9	24	y	0.20	11	44	11	44	y	ENSMUSG00000004221.17	Ikbkg	chrX	protein_coding	inhibitor of kappaB kinase gamma
known_NIR_20931	chrX	73471813	73476411	+	73471480	73476411	A5SS	ENSMUST00000144947.8	known	0.03	1	36	1	36	n	0.00	0	21	0	21	n	0.04	4	89	4	89	y	0.06	4	63	4	63	y	0.02	2	86	2	86	y	0.09	6	61	6	61	y	0.02	1	51	1	51	n	0.02	1	43	1	43	n	0.05	2	40	2	40	y	0.00	0	55	0	55	n	0.08	2	24	2	24	y	0.08	4	44	4	44	y	ENSMUSG00000004221.17	Ikbkg	chrX	protein_coding	inhibitor of kappaB kinase gamma
known_NIR_20932	chrX	73471813	73476411	+	73471508	73476411	A5SS	ENSMUST00000004330.10	known	0.33	1	2	1	2	n	0.00	0	8	0	8	n	0.15	4	23	4	23	y	0.40	4	6	4	6	y	0.07	2	25	2	25	y	0.33	6	12	6	12	y	0.05	1	19	1	19	n	0.14	1	6	1	6	n	0.18	2	9	2	9	y	0.00	0	12	0	12	n	0.18	2	9	2	9	y	0.27	4	11	4	11	y	ENSMUSG00000004221.17	Ikbkg	chrX	protein_coding	inhibitor of kappaB kinase gamma
known_NIR_20933	chrX	73473427	73476411	+	73471480	73476411	A5SS	ENSMUST00000144947.8	known	0.03	1	36	1	36	n	0.12	3	21	3	21	y	0.05	5	89	5	89	y	0.05	3	63	3	63	y	0.03	3	86	3	86	y	0.05	3	61	3	61	y	0.12	7	51	7	51	y	0.07	3	43	3	43	y	0.02	1	40	1	40	n	0.10	6	55	6	55	y	0.08	2	24	2	24	y	0.06	3	44	3	44	y	ENSMUSG00000004221.17	Ikbkg	chrX	protein_coding	inhibitor of kappaB kinase gamma
known_NIR_20934	chrX	73473427	73476411	+	73471508	73476411	A5SS	ENSMUST00000004330.10	known	0.33	1	2	1	2	n	0.27	3	8	3	8	y	0.18	5	23	5	23	y	0.33	3	6	3	6	n	0.11	3	25	3	25	y	0.20	3	12	3	12	y	0.27	7	19	7	19	y	0.33	3	6	3	6	n	0.10	1	9	1	9	n	0.33	6	12	6	12	y	0.18	2	9	2	9	y	0.21	3	11	3	11	y	ENSMUSG00000004221.17	Ikbkg	chrX	protein_coding	inhibitor of kappaB kinase gamma
known_NIR_20935	chrX	73477620	73480773	+	73477620	73480770	A3SS	ENSMUST00000164101.8	known	0.21	21	77	21	77	y	0.13	9	59	9	59	y	0.24	49	157	49	157	y	0.18	23	104	23	104	y	0.20	37	151	37	151	y	0.22	23	82	23	82	y	0.19	23	96	23	96	y	0.28	20	51	20	51	y	0.11	9	72	9	72	y	0.22	30	105	30	105	y	0.24	23	74	23	74	y	0.26	29	84	29	84	y	ENSMUSG00000004221.17	Ikbkg	chrX	protein_coding	inhibitor of kappaB kinase gamma
known_NIR_20936	chrX	74139733	74140440	+	74140320	74140440	A5SS	ENSMUST00000135389.8	known	1.00	4	0	4	0	n	1.00	3	0	3	0	n	0.64	7	4	7	4	y	0.73	11	4	11	4	y	0.77	10	3	10	3	y	0.78	7	2	7	2	n	0.83	10	2	10	2	y	0.67	4	2	4	2	n	0.82	9	2	9	2	y	0.70	16	7	16	7	y	0.75	9	3	9	3	y	0.79	19	5	19	5	y	ENSMUSG00000031403.15	Dkc1	chrX	protein_coding	dyskeratosis congenita 1, dyskerin
known_NIR_20937	chrX	74139733;74140320	74140239;74140440	+	74139733	74140440	cassetteExon	ENSMUST00000033776.15	known	0.00	0.0	4	0;0	4	n	0.00	0.0	3	0;0	3	n	0.22	2.0	7	0;4	7	n	0.21	3.0	11	2;4	11	y	0.13	1.5	10	0;3	10	n	0.12	1.0	7	0;2	7	n	0.09	1.0	10	0;2	10	n	0.27	1.5	4	1;2	4	n	0.10	1.0	9	0;2	9	n	0.22	4.5	16	2;7	16	y	0.22	2.5	9	2;3	9	y	0.14	3.0	19	1;5	19	n	ENSMUSG00000031403.15	Dkc1	chrX	protein_coding	dyskeratosis congenita 1, dyskerin
known_NIR_20938	chrX	74455392	74459621	-	74453219	74459621	A3SS	ENSMUST00000033543.14	known	0.07	1	14	1	14	n	0.05	1	21	1	21	n	0.20	3	12	3	12	y	0.03	1	28	1	28	n	0.08	3	34	3	34	y	0.00	0	5	0	5	n	0.00	0	36	0	36	n	0.20	2	8	2	8	y	0.05	1	20	1	20	n	0.03	1	34	1	34	n	0.11	3	25	3	25	y	0.10	3	26	3	26	y	ENSMUSG00000090110.9	Cmc4	chrX	protein_coding	C-x(9)-C motif containing 4
known_NIR_20939	chrX	74566964	74574691	+	74566964	74567442	3pMXE	ENSMUST00000114070.10	known	0.94	33	2	33	2	y	1.00	40	0	40	0	n	0.95	40	2	40	2	y	0.97	36	1	36	1	n	1.00	48	0	48	0	n	1.00	31	0	31	0	n	1.00	52	0	52	0	n	1.00	27	0	27	0	n	1.00	20	0	20	0	n	1.00	59	0	59	0	n	1.00	31	0	31	0	n	1.00	45	0	45	0	n	ENSMUSG00000031197.12	Vbp1	chrX	protein_coding	von Hippel-Lindau binding protein 1
known_NIR_20940	chrX	74870559	74886689	-	74870559	74918654	A5SS	ENSMUST00000114059.10	known	0.00	0	41	0	41	n	0.00	0	45	0	45	n	0.00	0	97	0	97	n	0.00	0	66	0	66	n	0.00	0	96	0	96	n	0.00	0	62	0	62	n	0.00	0	46	0	46	n	0.00	0	58	0	58	n	0.00	0	61	0	61	n	0.00	0	87	0	87	n	0.00	0	42	0	42	n	0.02	2	82	2	82	y	ENSMUSG00000016382.16	Pls3	chrX	protein_coding	plastin 3 (T-isoform)
known_NIR_20941	chrX	74870559	74918654	-	74870559	74917944	5pMXE	ENSMUST00000033547.14	known	1.00	41	0	41	0	n	0.96	45	2	45	2	y	0.92	97	8	97	8	y	0.93	66	5	66	5	y	0.91	96	9	96	9	y	0.95	62	3	62	3	y	0.96	46	2	46	2	y	0.89	58	7	58	7	y	0.95	61	3	61	3	y	0.92	87	8	87	8	y	0.95	42	2	42	2	y	0.92	82	7	82	7	y	ENSMUSG00000016382.16	Pls3	chrX	protein_coding	plastin 3 (T-isoform)
known_NIR_20942	chrX	74870559;74917985	74917944;74918654	-	74870559	74918654	cassetteExon	ENSMUST00000114059.10	known	0.00	0.0	41	0;0	41	n	0.02	1.0	45	2;0	45	n	0.04	4.5	97	8;1	97	n	0.04	2.5	66	5;0	66	n	0.04	4.5	96	9;0	96	n	0.02	1.5	62	3;0	62	n	0.02	1.0	46	2;0	46	n	0.06	3.5	58	7;0	58	n	0.02	1.5	61	3;0	61	n	0.04	4.0	87	8;0	87	n	0.02	1.0	42	2;0	42	n	0.05	4.5	82	7;2	82	y	ENSMUSG00000016382.16	Pls3	chrX	protein_coding	plastin 3 (T-isoform)
known_NIR_20943	chrX	7588515	7590088	+	7588617	7590088	A5SS	ENSMUST00000043045.10	known	0.05	3	56	3	56	y	0.02	1	60	1	60	n	0.01	1	72	1	72	n	0.00	0	58	0	58	n	0.00	0	82	0	82	n	0.00	0	33	0	33	n	0.02	2	84	2	84	y	0.06	2	32	2	32	y	0.02	1	52	1	52	n	0.00	0	101	0	101	n	0.02	1	64	1	64	n	0.00	0	60	0	60	n	ENSMUSG00000039382.13	Wdr45	chrX	protein_coding	WD repeat domain 45
known_NIR_20944	chrX	7588617	7590088	+	7588469	7590088	A5SS	ENSMUST00000156000.8	known	1.00	56	0	56	0	n	1.00	60	0	60	0	n	0.99	72	1	72	1	n	1.00	58	0	58	0	n	0.96	82	3	82	3	y	1.00	33	0	33	0	n	1.00	84	0	84	0	n	1.00	32	0	32	0	n	1.00	52	0	52	0	n	1.00	101	0	101	0	n	1.00	64	0	64	0	n	1.00	60	0	60	0	n	ENSMUSG00000039382.13	Wdr45	chrX	protein_coding	WD repeat domain 45
known_NIR_20945	chrX	7588617	7590092	+	7588617	7589554	A3SS&ES	ENSMUST00000144148.4	known	1.00	12	0	12	0	n	0.60	3	2	3	2	n	0.79	15	4	15	4	y	0.87	13	2	13	2	y	1.00	10	0	10	0	n	0.71	5	2	5	2	n	0.83	19	4	19	4	y	0.80	4	1	4	1	n	0.86	6	1	6	1	n	1.00	21	0	21	0	n	0.90	9	1	9	1	n	0.93	14	1	14	1	n	ENSMUSG00000039382.13	Wdr45	chrX	protein_coding	WD repeat domain 45
known_NIR_20946	chrX	7588617	7590092	+	7588617	7589804	A3SS&ES	ENSMUST00000131077.9	known	1.00	12	0	12	0	n	1.00	3	0	3	0	n	1.00	15	0	15	0	n	0.87	13	2	13	2	y	0.91	10	1	10	1	n	1.00	5	0	5	0	n	1.00	19	0	19	0	n	1.00	4	0	4	0	n	1.00	6	0	6	0	n	1.00	21	0	21	0	n	1.00	9	0	9	0	n	0.93	14	1	14	1	n	ENSMUSG00000039382.13	Wdr45	chrX	protein_coding	WD repeat domain 45
known_NIR_20947	chrX	7588617	7590092	+	7588617	7590088	A3SS	ENSMUST00000043045.10	known	0.18	12	56	12	56	y	0.05	3	60	3	60	y	0.17	15	72	15	72	y	0.18	13	58	13	58	y	0.11	10	82	10	82	y	0.13	5	33	5	33	y	0.18	19	84	19	84	y	0.11	4	32	4	32	y	0.10	6	52	6	52	y	0.17	21	101	21	101	y	0.12	9	64	9	64	y	0.19	14	60	14	60	y	ENSMUSG00000039382.13	Wdr45	chrX	protein_coding	WD repeat domain 45
known_NIR_20948	chrX	7588617	7590092	+	7589992	7590092	5pMXE	ENSMUST00000155914.2	known	0.86	12	2	12	2	y	1.00	3	0	3	0	n	1.00	15	0	15	0	n	1.00	13	0	13	0	n	1.00	10	0	10	0	n	1.00	5	0	5	0	n	1.00	19	0	19	0	n	1.00	4	0	4	0	n	1.00	6	0	6	0	n	1.00	21	0	21	0	n	1.00	9	0	9	0	n	1.00	14	0	14	0	n	ENSMUSG00000039382.13	Wdr45	chrX	protein_coding	WD repeat domain 45
known_NIR_20949	chrX	7588617;7589992	7589554;7590088	+	7588617	7590088	cassetteExon	ENSMUST00000043045.10	known	0.03	2.0	56	0;4	56	n	0.02	1.5	60	2;1	60	n	0.08	6.0	72	4;8	72	y	0.05	3.0	58	2;4	58	y	0.05	4.5	82	0;9	82	n	0.06	2.0	33	2;2	33	y	0.04	3.5	84	4;3	84	y	0.10	3.5	32	1;6	32	n	0.05	3.0	52	1;5	52	n	0.03	3.0	101	0;6	101	n	0.06	4.0	64	1;7	64	n	0.02	1.5	60	1;2	60	n	ENSMUSG00000039382.13	Wdr45	chrX	protein_coding	WD repeat domain 45
known_NIR_20950	chrX	7588617;7589992	7589804;7590088	+	7588617	7590088	cassetteExon	ENSMUST00000043045.10	known	0.03	2.0	56	0;4	56	n	0.01	0.5	60	0;1	60	n	0.05	4.0	72	0;8	72	n	0.05	3.0	58	2;4	58	y	0.06	5.0	82	1;9	82	n	0.03	1.0	33	0;2	33	n	0.02	1.5	84	0;3	84	n	0.09	3.0	32	0;6	32	n	0.05	2.5	52	0;5	52	n	0.03	3.0	101	0;6	101	n	0.05	3.5	64	0;7	64	n	0.02	1.5	60	1;2	60	n	ENSMUSG00000039382.13	Wdr45	chrX	protein_coding	WD repeat domain 45
known_NIR_20951	chrX	7589596	7590088	+	7589992	7590088	A5SS&ES	ENSMUST00000144148.4	known	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.18	2	9	2	9	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.50	2	2	2	2	n	ENSMUSG00000039382.13	Wdr45	chrX	protein_coding	WD repeat domain 45
known_NIR_20952	chrX	7589992	7590088	+	7588469	7590088	A5SS	ENSMUST00000156000.8	known	1.00	4	0	4	0	n	1.00	1	0	1	0	n	0.89	8	1	8	1	n	1.00	4	0	4	0	n	0.75	9	3	9	3	y	1.00	2	0	2	0	n	1.00	3	0	3	0	n	1.00	6	0	6	0	n	1.00	5	0	5	0	n	1.00	6	0	6	0	n	1.00	7	0	7	0	n	1.00	2	0	2	0	n	ENSMUSG00000039382.13	Wdr45	chrX	protein_coding	WD repeat domain 45
known_NIR_20953	chrX	7590530	7591979	+	7590530	7592170	A3SS	ENSMUST00000156000.8	known	0.01	1	77	1	77	n	0.00	0	59	0	59	n	0.00	0	102	0	102	n	0.00	0	105	0	105	n	0.03	4	138	4	138	y	0.00	0	64	0	64	n	0.00	0	116	0	116	n	0.04	2	52	2	52	y	0.00	0	80	0	80	n	0.02	3	133	3	133	y	0.00	0	105	0	105	n	0.01	1	143	1	143	n	ENSMUSG00000039382.13	Wdr45	chrX	protein_coding	WD repeat domain 45
known_NIR_20954	chrX	7592275	7592488	+	7592275	7592437	A3SS	ENSMUST00000156000.8	known	0.00	0	110	0	110	n	0.01	1	102	1	102	n	0.00	0	122	0	122	n	0.00	0	151	0	151	n	0.01	1	158	1	158	n	0.00	0	69	0	69	n	0.00	0	159	0	159	n	0.00	0	88	0	88	n	0.00	0	84	0	84	n	0.01	2	174	2	174	y	0.00	0	155	0	155	n	0.00	0	175	0	175	n	ENSMUSG00000039382.13	Wdr45	chrX	protein_coding	WD repeat domain 45
known_NIR_20955	chrX	7592555	7592925	+	7592531	7592925	A5SS	ENSMUST00000208553.2	known	0.00	0	117	0	117	n	0.00	0	108	0	108	n	0.01	1	106	1	106	n	0.00	0	105	0	105	n	0.01	1	135	1	135	n	0.00	0	74	0	74	n	0.00	0	142	0	142	n	0.03	2	64	2	64	y	0.00	0	120	0	120	n	0.01	2	183	2	183	y	0.01	1	126	1	126	n	0.00	0	156	0	156	n	ENSMUSG00000039382.13	Wdr45	chrX	protein_coding	WD repeat domain 45
known_NIR_20956	chrX	7593004	7593207	+	7593004	7593117	3pMXE	ENSMUST00000208553.2	known	0.00	0	140	0	140	n	0.00	0	102	0	102	n	0.00	0	129	0	129	n	0.00	0	115	0	115	n	0.03	5	145	5	145	y	0.00	0	85	0	85	n	0.00	0	153	0	153	n	0.00	0	82	0	82	n	0.02	2	122	2	122	y	0.00	0	183	0	183	n	0.00	0	129	0	129	n	0.00	0	184	0	184	n	ENSMUSG00000039382.13	Wdr45	chrX	protein_coding	WD repeat domain 45
known_NIR_20957	chrX	7593325	7593421	+	7593325	7593409	A3SS	ENSMUST00000043045.10	known	0.00	0	164	0	164	n	0.00	0	148	0	148	n	0.00	0	144	0	144	n	0.02	3	165	3	165	y	0.00	0	174	0	174	n	0.00	0	85	0	85	n	0.00	0	182	0	182	n	0.00	0	88	0	88	n	0.00	0	130	0	130	n	0.00	0	234	0	234	n	0.00	0	172	0	172	n	0.00	0	194	0	194	n	ENSMUSG00000039382.13	Wdr45	chrX	protein_coding	WD repeat domain 45
known_NIR_20958	chrX	7593325	7593451	+	7593325	7593409	A3SS	ENSMUST00000043045.10	known	0.03	5	164	5	164	y	0.01	1	148	1	148	n	0.03	4	144	4	144	y	0.01	2	165	2	165	y	0.03	6	174	6	174	y	0.00	0	85	0	85	n	0.04	7	182	7	182	y	0.02	2	88	2	88	y	0.06	8	130	8	130	y	0.00	0	234	0	234	n	0.01	2	172	2	172	y	0.04	8	194	8	194	y	ENSMUSG00000039382.13	Wdr45	chrX	protein_coding	WD repeat domain 45
known_NIR_20959	chrX	7593731	7595955	+	7593731	7593989	3pMXE	ENSMUST00000043045.10	known	0.00	0	159	0	159	n	0.01	1	160	1	160	n	0.00	0	149	0	149	n	0.02	2	129	2	129	y	0.00	0	170	0	170	n	0.00	0	90	0	90	n	0.00	0	210	0	210	n	0.00	0	82	0	82	n	0.00	0	130	0	130	n	0.00	0	198	0	198	n	0.01	1	179	1	179	n	0.01	2	185	2	185	y	ENSMUSG00000039382.13	Wdr45	chrX	protein_coding	WD repeat domain 45
known_NIR_20960	chrX	7595001	7595955	+	7593731	7595955	A5SS	ENSMUST00000207461.2	known	1.00	6	0	6	0	n	0.75	3	1	3	1	n	1.00	12	0	12	0	n	0.85	11	2	11	2	y	1.00	25	0	25	0	n	1.00	9	0	9	0	n	1.00	21	0	21	0	n	1.00	12	0	12	0	n	1.00	9	0	9	0	n	1.00	18	0	18	0	n	0.95	19	1	19	1	n	0.90	18	2	18	2	y	ENSMUSG00000109493.2	Gm45208	chrX	protein_coding	predicted gene 45208
known_NIR_20961	chrX	7604762	7607451	-	7604762	7606382	5pMXE	ENSMUST00000128011.8	known	-	-	-	-	-	-	1.00	1	0	1	0	n	0.77	10	3	10	3	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031150.14	Ccdc120	chrX	protein_coding	coiled-coil domain containing 120
known_NIR_20962	chrX	7604762	7607451	-	7604762	7606394	5pMXE	ENSMUST00000156787.2	known	-	-	-	-	-	-	1.00	1	0	1	0	n	0.83	10	2	10	2	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031150.14	Ccdc120	chrX	protein_coding	coiled-coil domain containing 120
known_NIR_20963	chrX	7604762	7607451	-	7604762	7606588	A5SS&ES	ENSMUST00000139499.2	known	-	-	-	-	-	-	1.00	1	0	1	0	n	0.83	10	2	10	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.80	4	1	4	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000031150.14	Ccdc120	chrX	protein_coding	coiled-coil domain containing 120
known_NIR_20964	chrX	7604762;7606644	7606382;7607451	-	7604762	7607451	cassetteExon	ENSMUST00000033490.13	known	-	-	-	-	-	-	0.00	0.0	1	0;0	1	n	0.20	2.5	10	3;2	10	y	-	-	-	-	-	-	1.00	1.5	0	0;3	0	n	0.00	0.0	4	0;0	4	n	-	-	-	-	-	-	0.00	0.0	1	0;0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	0.5	0	0;1	0	n	ENSMUSG00000031150.14	Ccdc120	chrX	protein_coding	coiled-coil domain containing 120
known_NIR_20965	chrX	7604762;7606644	7606394;7607451	-	7604762	7607451	cassetteExon	ENSMUST00000033490.13	known	-	-	-	-	-	-	0.00	0.0	1	0;0	1	n	0.17	2.0	10	2;2	10	y	-	-	-	-	-	-	1.00	1.5	0	0;3	0	n	0.00	0.0	4	0;0	4	n	-	-	-	-	-	-	0.00	0.0	1	0;0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	0.5	0	0;1	0	n	ENSMUSG00000031150.14	Ccdc120	chrX	protein_coding	coiled-coil domain containing 120
known_NIR_20966	chrX	7604762;7606644	7606588;7607451	-	7604762	7607451	cassetteExon	ENSMUST00000033490.13	known	-	-	-	-	-	-	0.00	0.0	1	0;0	1	n	0.17	2.0	10	2;2	10	y	-	-	-	-	-	-	1.00	2.5	0	2;3	0	n	0.11	0.5	4	1;0	4	n	-	-	-	-	-	-	0.33	0.5	1	1;0	1	n	-	-	-	-	-	-	1.00	0.5	0	1;0	0	n	-	-	-	-	-	-	1.00	1.0	0	1;1	0	n	ENSMUSG00000031150.14	Ccdc120	chrX	protein_coding	coiled-coil domain containing 120
known_NIR_20967	chrX	7604762;7606648	7606382;7607451	-	7604762	7607451	cassetteExon	ENSMUST00000033490.13	known	-	-	-	-	-	-	0.00	0.0	1	0;0	1	n	0.20	2.5	10	3;2	10	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0.0	4	0;0	4	n	-	-	-	-	-	-	0.00	0.0	1	0;0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1.0	0	0;2	0	n	ENSMUSG00000031150.14	Ccdc120	chrX	protein_coding	coiled-coil domain containing 120
known_NIR_20968	chrX	7604762;7606648	7606394;7607451	-	7604762	7607451	cassetteExon	ENSMUST00000033490.13	known	-	-	-	-	-	-	0.00	0.0	1	0;0	1	n	0.17	2.0	10	2;2	10	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0.0	4	0;0	4	n	-	-	-	-	-	-	0.00	0.0	1	0;0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1.0	0	0;2	0	n	ENSMUSG00000031150.14	Ccdc120	chrX	protein_coding	coiled-coil domain containing 120
known_NIR_20969	chrX	7604762;7606648	7606588;7607451	-	7604762	7607451	cassetteExon	ENSMUST00000033490.13	known	-	-	-	-	-	-	0.00	0.0	1	0;0	1	n	0.17	2.0	10	2;2	10	y	-	-	-	-	-	-	1.00	1.0	0	2;0	0	n	0.11	0.5	4	1;0	4	n	-	-	-	-	-	-	0.33	0.5	1	1;0	1	n	-	-	-	-	-	-	1.00	0.5	0	1;0	0	n	-	-	-	-	-	-	1.00	1.5	0	1;2	0	n	ENSMUSG00000031150.14	Ccdc120	chrX	protein_coding	coiled-coil domain containing 120
known_NIR_20970	chrX	7629299	7631746	+	7628869	7631746	A5SS	ENSMUST00000144715.2	known	1.00	24	0	24	0	n	1.00	13	0	13	0	n	0.99	72	1	72	1	n	1.00	13	0	13	0	n	1.00	39	0	39	0	n	1.00	22	0	22	0	n	1.00	28	0	28	0	n	1.00	25	0	25	0	n	1.00	23	0	23	0	n	0.94	32	2	32	2	y	1.00	14	0	14	0	n	1.00	25	0	25	0	n	ENSMUSG00000000134.18	Tfe3	chrX	protein_coding	transcription factor E3
known_NIR_20971	chrX	7629452	7631746	+	7629299	7631746	A5SS	ENSMUST00000077680.10	known	0.00	0	24	0	24	n	0.00	0	13	0	13	n	0.04	3	72	3	72	y	0.19	3	13	3	13	y	0.03	1	39	1	39	n	0.00	0	22	0	22	n	0.00	0	28	0	28	n	0.00	0	25	0	25	n	0.00	0	23	0	23	n	0.00	0	32	0	32	n	0.00	0	14	0	14	n	0.00	0	25	0	25	n	ENSMUSG00000000134.18	Tfe3	chrX	protein_coding	transcription factor E3
known_NIR_20972	chrX	7630237	7631746	+	7629299	7631746	A5SS	ENSMUST00000077680.10	known	0.00	0	24	0	24	n	0.00	0	13	0	13	n	0.04	3	72	3	72	y	0.00	0	13	0	13	n	0.00	0	39	0	39	n	0.00	0	22	0	22	n	0.00	0	28	0	28	n	0.00	0	25	0	25	n	0.08	2	23	2	23	y	0.00	0	32	0	32	n	0.00	0	14	0	14	n	0.00	0	25	0	25	n	ENSMUSG00000000134.18	Tfe3	chrX	protein_coding	transcription factor E3
known_NIR_20973	chrX	7630399	7631746	+	7629299	7631746	A5SS	ENSMUST00000077680.10	known	0.00	0	24	0	24	n	0.00	0	13	0	13	n	0.03	2	72	2	72	y	0.00	0	13	0	13	n	0.00	0	39	0	39	n	0.00	0	22	0	22	n	0.00	0	28	0	28	n	0.00	0	25	0	25	n	0.00	0	23	0	23	n	0.00	0	32	0	32	n	0.00	0	14	0	14	n	0.00	0	25	0	25	n	ENSMUSG00000000134.18	Tfe3	chrX	protein_coding	transcription factor E3
known_NIR_20974	chrX	7631859	7632813	+	7631859	7632794	A3SS	ENSMUST00000132209.8	known	0.10	2	19	2	19	y	0.08	1	11	1	11	n	0.20	16	64	16	64	y	0.21	4	15	4	15	y	0.11	6	48	6	48	y	0.19	6	26	6	26	y	0.17	4	20	4	20	y	0.27	6	16	6	16	y	0.29	6	15	6	15	y	0.21	7	27	7	27	y	0.04	1	26	1	26	n	0.12	5	35	5	35	y	ENSMUSG00000000134.18	Tfe3	chrX	protein_coding	transcription factor E3
known_NIR_20975	chrX	7631859	7632859	+	7631859	7632794	A3SS	ENSMUST00000132209.8	known	0.00	0	19	0	19	n	0.00	0	11	0	11	n	0.00	0	64	0	64	n	0.00	0	15	0	15	n	0.00	0	48	0	48	n	0.00	0	26	0	26	n	0.00	0	20	0	20	n	0.00	0	16	0	16	n	0.00	0	15	0	15	n	0.00	0	27	0	27	n	0.00	0	26	0	26	n	0.08	3	35	3	35	y	ENSMUSG00000000134.18	Tfe3	chrX	protein_coding	transcription factor E3
known_NIR_20976	chrX	7633923	7635669	+	7633923;7634236	7634132;7635669	ES	ENSMUST00000077680.10	known	0.15	6	34.0	6	30;38	y	0.04	1	22.0	1	15;29	n	0.14	14	88.0	14	84;92	y	0.03	1	35.5	1	33;38	n	0.13	9	59.5	9	47;72	y	0.18	8	35.5	8	32;39	y	0.13	6	40.5	6	40;41	y	0.16	7	37.5	7	36;39	y	0.08	2	22.5	2	24;21	y	0.12	5	36.0	5	35;37	y	0.14	4	24.5	4	21;28	y	0.12	6	44.5	6	42;47	y	ENSMUSG00000000134.18	Tfe3	chrX	protein_coding	transcription factor E3
known_NIR_20977	chrX	76554875;76628465	76628400;76677152	+	76554875	76677152	cassetteExon	ENSMUST00000088217.12	known	0.00	0.0	8	0;0	8	n	0.00	0.0	7	0;0	7	n	0.10	2.0	18	1;3	18	n	0.14	2.5	15	1;4	15	n	0.14	4.0	25	3;5	25	y	0.09	1.0	10	0;2	10	n	0.19	4.5	19	3;6	19	y	0.09	1.0	10	0;2	10	n	0.03	0.5	16	1;0	16	n	0.10	2.0	18	1;3	18	n	0.00	0.0	19	0;0	19	n	0.09	2.5	24	2;3	24	y	ENSMUSG00000025246.14	Tbl1x	chrX	protein_coding	transducin (beta)-like 1 X-linked
known_NIR_20978	chrX	7658576	7660499	+	7658576	7665529	A3SS	ENSMUST00000136930.8	known	1.00	34	0	34	0	n	1.00	30	0	30	0	n	0.98	52	1	52	1	n	0.97	35	1	35	1	n	0.97	61	2	61	2	y	0.98	40	1	40	1	n	0.98	44	1	44	1	n	1.00	36	0	36	0	n	1.00	42	0	42	0	n	1.00	40	0	40	0	n	1.00	37	0	37	0	n	1.00	48	0	48	0	n	ENSMUSG00000031153.17	Gripap1	chrX	protein_coding	GRIP1 associated protein 1
known_NIR_20979	chrX	7661338	7665529	+	7658576	7665529	A5SS	ENSMUST00000136930.8	known	1.00	61	0	61	0	n	1.00	59	0	59	0	n	0.98	57	1	57	1	n	0.98	58	1	58	1	n	0.98	94	2	94	2	y	0.98	47	1	47	1	n	0.98	55	1	55	1	n	1.00	39	0	39	0	n	1.00	59	0	59	0	n	1.00	41	0	41	0	n	1.00	54	0	54	0	n	1.00	60	0	60	0	n	ENSMUSG00000031153.17	Gripap1	chrX	protein_coding	GRIP1 associated protein 1
known_NIR_20980	chrX	7666580	7667416	+	7666580;7666822	7666775;7667416	ES	ENSMUST00000065932.14	known	0.11	3	25.0	3	21;29	y	0.22	5	17.5	5	17;18	y	0.14	7	42.5	7	43;42	y	0.05	2	38.5	2	34;43	y	0.07	4	56.5	4	54;59	y	0.13	4	27.5	4	27;28	y	0.13	4	26.0	4	28;24	y	0.13	3	20.5	3	21;20	y	0.28	8	20.5	8	17;24	y	0.12	3	22.5	3	21;24	y	0.08	2	22.5	2	19;26	y	0.04	2	52.0	2	49;55	y	ENSMUSG00000031153.17	Gripap1	chrX	protein_coding	GRIP1 associated protein 1
known_NIR_20981	chrX	7669639;7669925	7669833;7670599	+	7669639	7670599	cassetteExon	ENSMUST00000065932.14	known	0.12	6.0	45	4;8	45	y	0.05	2.0	35	1;3	35	n	0.14	9.5	57	5;14	57	y	0.09	4.5	44	3;6	44	y	0.09	6.0	64	5;7	64	y	0.12	4.5	32	6;3	32	y	0.10	4.5	41	4;5	41	y	0.12	3.0	21	2;4	21	y	0.12	4.5	34	4;5	34	y	0.11	5.5	43	4;7	43	y	0.10	4.5	40	5;4	40	y	0.20	9.0	35	7;11	35	y	ENSMUSG00000031153.17	Gripap1	chrX	protein_coding	GRIP1 associated protein 1
known_NIR_20982	chrX	7734077	7734162	+	7734062	7734162	A5SS	ENSMUST00000033494.16	known	0.04	2	54	2	54	y	0.00	0	54	0	54	n	0.00	0	97	0	97	n	0.00	0	55	0	55	n	0.00	0	92	0	92	n	0.00	0	46	0	46	n	0.00	0	71	0	71	n	0.00	0	35	0	35	n	0.00	0	49	0	49	n	0.00	0	91	0	91	n	0.00	0	61	0	61	n	0.00	0	85	0	85	n	ENSMUSG00000031154.16	Otud5	chrX	protein_coding	OTU domain containing 5
known_NIR_20983	chrX	7740192	7740469	+	7740192	7740472	A3SS	ENSMUST00000033494.16	known	0.19	13	55	13	55	y	0.21	15	57	15	57	y	0.22	19	67	19	67	y	0.21	13	49	13	49	y	0.28	23	60	23	60	y	0.31	20	44	20	44	y	0.25	27	82	27	82	y	0.26	13	37	13	37	y	0.29	18	44	18	44	y	0.20	21	86	21	86	y	0.29	21	51	21	51	y	0.25	22	67	22	67	y	ENSMUSG00000031154.16	Otud5	chrX	protein_coding	OTU domain containing 5
known_NIR_20984	chrX	7756002	7758969	+	7756002	7758379	A3SS	ENSMUST00000115660.12	known	0.00	0	35	0	35	n	0.00	0	30	0	30	n	0.00	0	42	0	42	n	0.00	0	42	0	42	n	0.00	0	49	0	49	n	0.00	0	26	0	26	n	0.00	0	44	0	44	n	0.00	0	28	0	28	n	0.00	0	20	0	20	n	0.00	0	32	0	32	n	0.14	4	24	4	24	y	0.00	0	45	0	45	n	ENSMUSG00000031156.19	Slc35a2	chrX	protein_coding	solute carrier family 35 (UDP-galactose transporter), member A2
known_NIR_20985	chrX	7756002	7760430	+	7756002	7758379	A3SS	ENSMUST00000115660.12	known	0.00	0	35	0	35	n	0.00	0	30	0	30	n	0.07	3	42	3	42	y	0.00	0	42	0	42	n	0.02	1	49	1	49	n	0.00	0	26	0	26	n	0.02	1	44	1	44	n	0.00	0	28	0	28	n	0.00	0	20	0	20	n	0.00	0	32	0	32	n	0.04	1	24	1	24	n	0.00	0	45	0	45	n	ENSMUSG00000031156.19	Slc35a2	chrX	protein_coding	solute carrier family 35 (UDP-galactose transporter), member A2
known_NIR_20986	chrX	7756002	7760430	+	7756002;7759106	7758379;7760430	ES	ENSMUST00000115663.10	known	0.00	0	20.5	0	35;6	n	0.00	0	19.5	0	30;9	n	0.11	3	24.0	3	42;6	y	0.00	0	25.0	0	42;8	n	0.03	1	29.0	1	49;9	n	0.00	0	15.5	0	26;5	n	0.04	1	26.0	1	44;8	n	0.00	0	16.0	0	28;4	n	0.00	0	14.0	0	20;8	n	0.00	0	20.0	0	32;8	n	0.06	1	17.0	1	24;10	n	0.00	0	26.0	0	45;7	n	ENSMUSG00000031156.19	Slc35a2	chrX	protein_coding	solute carrier family 35 (UDP-galactose transporter), member A2
known_NIR_20987	chrX	7756002	7760430	+	7756002;7759654	7758379;7760430	ES	ENSMUST00000155967.3	known	0.00	0	19.5	0	35;4	n	0.00	0	15.0	0	30;0	n	0.11	3	23.5	3	42;5	y	0.00	0	22.0	0	42;2	n	0.04	1	27.5	1	49;6	n	0.00	0	13.5	0	26;1	n	0.04	1	24.5	1	44;5	n	0.00	0	16.5	0	28;5	n	0.00	0	10.5	0	20;1	n	0.00	0	16.0	0	32;0	n	0.06	1	15.5	1	24;7	n	0.00	0	23.5	0	45;2	n	ENSMUSG00000031156.19	Slc35a2	chrX	protein_coding	solute carrier family 35 (UDP-galactose transporter), member A2
known_NIR_20988	chrX	7759654	7760430	+	7759106	7760430	A5SS	ENSMUST00000115663.10	known	0.40	4	6	4	6	y	0.00	0	9	0	9	n	0.45	5	6	5	6	y	0.20	2	8	2	8	y	0.40	6	9	6	9	y	0.17	1	5	1	5	n	0.38	5	8	5	8	y	0.56	5	4	5	4	n	0.11	1	8	1	8	n	0.00	0	8	0	8	n	0.41	7	10	7	10	y	0.22	2	7	2	7	n	ENSMUSG00000031156.19	Slc35a2	chrX	protein_coding	solute carrier family 35 (UDP-galactose transporter), member A2
known_NIR_20989	chrX	7764875	7765010	-	7764875	7765408	A5SS	ENSMUST00000033497.9	known	0.40	37	56	37	56	y	0.23	19	65	19	65	y	0.29	26	64	26	64	y	0.40	25	38	25	38	y	0.36	37	66	37	66	y	0.45	21	26	21	26	y	0.38	22	36	22	36	y	0.32	18	38	18	38	y	0.32	23	48	23	48	y	0.44	34	44	34	44	y	0.33	23	47	23	47	y	0.35	28	53	28	53	y	ENSMUSG00000031157.11	Pqbp1	chrX	protein_coding	polyglutamine binding protein 1
known_NIR_20990	chrX	7764875	7765019	-	7764875	7765010	A5SS	ENSMUST00000115655.8	known	0.05	2	37	2	37	y	0.17	4	19	4	19	y	0.10	3	26	3	26	y	0.24	8	25	8	25	y	0.05	2	37	2	37	y	0.05	1	21	1	21	n	0.08	2	22	2	22	y	0.14	3	18	3	18	y	0.15	4	23	4	23	y	0.08	3	34	3	34	y	0.04	1	23	1	23	n	0.07	2	28	2	28	y	ENSMUSG00000031157.11	Pqbp1	chrX	protein_coding	polyglutamine binding protein 1
known_NIR_20991	chrX	7764875	7765019	-	7764875	7765408	A5SS	ENSMUST00000033497.9	known	0.03	2	56	2	56	y	0.06	4	65	4	65	y	0.04	3	64	3	64	y	0.17	8	38	8	38	y	0.03	2	66	2	66	y	0.04	1	26	1	26	n	0.05	2	36	2	36	y	0.07	3	38	3	38	y	0.08	4	48	4	48	y	0.06	3	44	3	44	y	0.02	1	47	1	47	n	0.04	2	53	2	53	y	ENSMUSG00000031157.11	Pqbp1	chrX	protein_coding	polyglutamine binding protein 1
known_NIR_20992	chrX	7766004	7767200	+	7765708	7767200	A5SS	ENSMUST00000033498.10	known	0.00	0	146	0	146	n	0.00	0	148	0	148	n	0.01	2	185	2	185	y	0.00	0	119	0	119	n	0.01	3	210	3	210	y	0.02	2	120	2	120	y	0.01	1	165	1	165	n	0.02	2	126	2	126	y	0.00	0	105	0	105	n	0.01	1	190	1	190	n	0.01	1	178	1	178	n	0.00	0	169	0	169	n	ENSMUSG00000031158.12	Timm17b	chrX	protein_coding	translocase of inner mitochondrial membrane 17b
known_NIR_20993	chrX	7813267	7813364	-	7813270	7813364	A3SS	ENSMUST00000115642.8	known	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.20	3	12	3	12	y	0.00	0	28	0	28	n	0.00	0	36	0	36	n	0.07	1	13	1	13	n	0.21	3	11	3	11	y	0.00	0	14	0	14	n	0.00	0	21	0	21	n	0.00	0	17	0	17	n	0.00	0	12	0	12	n	0.00	0	19	0	19	n	ENSMUSG00000031161.16	Hdac6	chrX	protein_coding	histone deacetylase 6
known_NIR_20994	chrX	7813483	7813814	-	7813483	7813889	A5SS	ENSMUST00000115642.8	known	0.30	3	7	3	7	y	0.50	1	1	1	1	n	0.31	4	9	4	9	y	0.47	7	8	7	8	y	0.37	7	12	7	12	y	0.22	2	7	2	7	n	0.56	9	7	9	7	y	0.00	0	9	0	9	n	0.36	4	7	4	7	y	0.67	12	6	12	6	y	0.60	3	2	3	2	n	0.40	4	6	4	6	y	ENSMUSG00000031161.16	Hdac6	chrX	protein_coding	histone deacetylase 6
known_NIR_20995	chrX	7938707	7940355	-	7938707	7940783	A5SS	ENSMUST00000115638.10	known	0.29	4	10	4	10	y	0.33	2	4	2	4	n	0.50	1	1	1	1	n	0.00	0	4	0	4	n	0.50	2	2	2	2	n	-	-	-	-	-	-	0.40	2	3	2	3	n	0.33	1	2	1	2	n	0.40	2	3	2	3	n	0.22	2	7	2	7	n	0.25	1	3	1	3	n	0.29	2	5	2	5	n	ENSMUSG00000039231.19	Suv39h1	chrX	protein_coding	suppressor of variegation 3-9 1
known_NIR_20996	chrX	7997830	7998526	-	7997864	7998526	A3SS	ENSMUST00000033506.13	known	0.00	0	14	0	14	n	0.40	2	3	2	3	n	0.00	0	17	0	17	n	0.19	4	17	4	17	y	0.05	1	21	1	21	n	0.20	1	4	1	4	n	0.15	4	23	4	23	y	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	20	0	20	n	0.00	0	8	0	8	n	0.06	1	17	1	17	n	ENSMUSG00000031166.14	Wdr13	chrX	protein_coding	WD repeat domain 13
known_NIR_20997	chrX	7998116	7998526	-	7997830	7998526	A3SS	ENSMUST00000133292.8	known	1.00	4	0	4	0	n	0.75	6	2	6	2	n	1.00	11	0	11	0	n	0.60	6	4	6	4	y	0.92	11	1	11	1	n	0.96	22	1	22	1	n	0.76	13	4	13	4	y	1.00	11	0	11	0	n	1.00	6	0	6	0	n	1.00	5	0	5	0	n	1.00	7	0	7	0	n	0.92	11	1	11	1	n	ENSMUSG00000031166.14	Wdr13	chrX	protein_coding	WD repeat domain 13
known_NIR_20998	chrX	7998116	7998526	-	7997864	7998526	A3SS	ENSMUST00000033506.13	known	0.22	4	14	4	14	y	0.67	6	3	6	3	n	0.39	11	17	11	17	y	0.26	6	17	6	17	y	0.34	11	21	11	21	y	0.85	22	4	22	4	y	0.36	13	23	13	23	y	0.48	11	12	11	12	y	0.33	6	12	6	12	y	0.20	5	20	5	20	y	0.47	7	8	7	8	y	0.39	11	17	11	17	y	ENSMUSG00000031166.14	Wdr13	chrX	protein_coding	WD repeat domain 13
known_NIR_20999	chrX	8007447	8009486	-	8007447	8009066	5pMXE	ENSMUST00000155599.2	known	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	16	0	16	n	0.25	1	3	1	3	n	0.20	2	8	2	8	y	-	-	-	-	-	-	0.14	1	6	1	6	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.21	3	11	3	11	y	ENSMUSG00000031167.17	Rbm3	chrX	protein_coding	RNA binding motif (RNP1, RRM) protein 3
known_NIR_21000	chrX	8007447	8009486	-	8009194	8009486	3pMXE	ENSMUST00000115615.9	known	0.00	0	43	0	43	n	0.00	0	38	0	38	n	0.00	0	223	0	223	n	0.04	1	22	1	22	n	0.03	2	72	2	72	y	0.00	0	118	0	118	n	0.02	1	60	1	60	n	0.00	0	74	0	74	n	0.00	0	32	0	32	n	0.00	0	51	0	51	n	0.00	0	37	0	37	n	0.04	3	67	3	67	y	ENSMUSG00000031167.17	Rbm3	chrX	protein_coding	RNA binding motif (RNP1, RRM) protein 3
known_NIR_21001	chrX	8007447	8009490	-	8007447	8009066	5pMXE	ENSMUST00000155599.2	known	0.62	5	3	5	3	n	1.00	2	0	2	0	n	0.00	0	16	0	16	n	0.40	2	3	2	3	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.33	3	6	3	6	n	0.00	0	8	0	8	n	1.00	3	0	3	0	n	0.33	3	6	3	6	n	0.40	2	3	2	3	n	0.35	6	11	6	11	y	ENSMUSG00000031167.17	Rbm3	chrX	protein_coding	RNA binding motif (RNP1, RRM) protein 3
known_NIR_21002	chrX	8007447	8009490	-	8009194	8009490	3pMXE	ENSMUST00000115621.9	known	0.03	5	142	5	142	y	0.01	2	171	2	171	y	0.00	0	766	0	766	n	0.02	2	108	2	108	y	0.00	0	278	0	278	n	0.00	0	482	0	482	n	0.01	3	208	3	208	y	0.00	0	251	0	251	n	0.03	3	105	3	105	y	0.02	3	157	3	157	y	0.01	2	151	2	151	y	0.03	6	167	6	167	y	ENSMUSG00000031167.17	Rbm3	chrX	protein_coding	RNA binding motif (RNP1, RRM) protein 3
known_NIR_21003	chrX	8007447;8009194	8009066;8009486	-	8007447	8009486	cassetteExon	ENSMUST00000115619.8	known	1.00	23.0	0	3;43	0	n	1.00	19.0	0	0;38	0	n	1.00	119.5	0	16;223	0	n	0.93	12.5	1	3;22	1	n	0.95	40.0	2	8;72	2	y	1.00	59.0	0	0;118	0	n	0.97	33.0	1	6;60	1	n	1.00	41.0	0	8;74	0	n	1.00	16.0	0	0;32	0	n	1.00	28.5	0	6;51	0	n	1.00	20.0	0	3;37	0	n	0.93	39.0	3	11;67	3	y	ENSMUSG00000031167.17	Rbm3	chrX	protein_coding	RNA binding motif (RNP1, RRM) protein 3
known_NIR_21004	chrX	8007447;8009194	8009066;8009490	-	8007447	8009490	cassetteExon	ENSMUST00000040010.10	known	0.94	72.5	5	3;142	5	y	0.98	85.5	2	0;171	2	n	1.00	391.0	0	16;766	0	n	0.97	55.5	2	3;108	2	y	1.00	143.0	0	8;278	0	n	1.00	241.0	0	0;482	0	n	0.97	107.0	3	6;208	3	y	1.00	129.5	0	8;251	0	n	0.95	52.5	3	0;105	3	n	0.96	81.5	3	6;157	3	y	0.97	77.0	2	3;151	2	y	0.94	89.0	6	11;167	6	y	ENSMUSG00000031167.17	Rbm3	chrX	protein_coding	RNA binding motif (RNP1, RRM) protein 3
known_NIR_21005	chrX	8009194	8009486	-	8009194	8009490	A5SS	ENSMUST00000115621.9	known	0.23	43	142	43	142	y	0.18	38	171	38	171	y	0.23	223	766	223	766	y	0.17	22	108	22	108	y	0.21	72	278	72	278	y	0.20	118	482	118	482	y	0.22	60	208	60	208	y	0.23	74	251	74	251	y	0.23	32	105	32	105	y	0.25	51	157	51	157	y	0.20	37	151	37	151	y	0.29	67	167	67	167	y	ENSMUSG00000031167.17	Rbm3	chrX	protein_coding	RNA binding motif (RNP1, RRM) protein 3
known_NIR_21006	chrX	8009568	8009897	-	8009571	8009897	A3SS	ENSMUST00000040010.10	known	0.54	93	79	93	79	y	0.46	96	111	96	111	y	0.52	574	525	574	525	y	0.50	67	68	67	68	y	0.54	203	172	203	172	y	0.55	326	271	326	271	y	0.49	144	150	144	150	y	0.52	187	171	187	171	y	0.47	85	95	85	95	y	0.49	117	123	117	123	y	0.57	114	87	114	87	y	0.56	112	87	112	87	y	ENSMUSG00000031167.17	Rbm3	chrX	protein_coding	RNA binding motif (RNP1, RRM) protein 3
known_NIR_21007	chrX	8010186;8010684	8010414;8010812	-	8010186	8010812	cassetteExon	ENSMUST00000040010.10	known	0.10	10.5	100	4;17	100	y	0.07	11.5	145	5;18	145	y	0.01	6.0	946	2;10	946	y	0.05	5.0	105	2;8	105	y	0.03	9.0	272	9;9	272	y	0.01	3.0	467	1;5	467	n	0.03	6.5	214	3;10	214	y	0.02	5.0	253	2;8	253	y	0.10	13.5	119	9;18	119	y	0.09	15.0	150	12;18	150	y	0.03	6.0	167	2;10	167	y	0.03	6.0	176	0;12	176	n	ENSMUSG00000031167.17	Rbm3	chrX	protein_coding	RNA binding motif (RNP1, RRM) protein 3
known_NIR_21008	chrX	8023017	8040440	-	8023017;8039131	8038977;8040440	ES	ENSMUST00000239441.2	known	0.00	0	8.0	0	2;14	n	0.00	0	5.0	0	7;3	n	0.00	0	15.5	0	19;12	n	0.00	0	6.5	0	7;6	n	0.11	1	8.5	1	6;11	n	0.00	0	6.0	0	7;5	n	0.00	0	11.0	0	11;11	n	0.25	1	3.0	1	3;3	n	0.00	0	7.5	0	5;10	n	0.08	1	11.5	1	13;10	n	0.20	2	8.0	2	7;9	y	0.00	0	3.5	0	4;3	n	ENSMUSG00000039201.11	Tbc1d25	chrX	protein_coding	TBC1 domain family, member 25
known_NIR_21009	chrX	8056675	8059536	-	8056675	8059040	A5SS	ENSMUST00000033509.15	known	0.02	12	533	12	533	y	0.02	8	460	8	460	y	0.00	0	424	0	424	n	0.01	8	659	8	659	y	0.01	6	773	6	773	y	0.01	4	302	4	302	y	0.01	5	627	5	627	y	0.01	4	381	4	381	y	0.01	6	567	6	567	y	0.01	12	818	12	818	y	0.00	3	599	3	599	y	0.01	11	745	11	745	y	ENSMUSG00000031168.15	Ebp	chrX	protein_coding	phenylalkylamine Ca2+ antagonist (emopamil) binding protein
known_NIR_21010	chrX	8067808	8069398	-	8067808;8069282	8069265;8069398	ES	ENSMUST00000082320.12	known	1.00	8	0.0	8	0;0	n	0.80	4	1.0	4	1;1	n	0.85	11	2.0	11	2;2	y	0.46	3	3.5	3	4;3	y	0.91	10	1.0	10	1;1	n	1.00	5	0.0	5	0;0	n	0.70	8	3.5	8	2;5	y	0.98	20	0.5	20	0;1	n	0.79	13	3.5	13	4;3	y	0.69	10	4.5	10	6;3	y	0.46	3	3.5	3	3;4	y	0.70	13	5.5	13	5;6	y	ENSMUSG00000031169.14	Porcn	chrX	protein_coding	porcupine O-acyltransferase
known_NIR_21011	chrX	8067808;8069789	8069398;8070031	-	8067808	8070031	cassetteExon	ENSMUST00000154695.8	known	1.00	7.5	0	8;7	0	n	1.00	6.5	0	4;9	0	n	1.00	6.5	0	11;2	0	n	1.00	3.0	0	3;3	0	n	1.00	5.0	0	10;0	0	n	1.00	4.0	0	5;3	0	n	1.00	7.5	0	8;7	0	n	1.00	12.0	0	20;4	0	n	1.00	8.0	0	13;3	0	n	1.00	11.5	0	10;13	0	n	1.00	3.0	0	3;3	0	n	0.83	9.5	2	13;6	2	y	ENSMUSG00000031169.14	Porcn	chrX	protein_coding	porcupine O-acyltransferase
known_NIR_21012	chrX	8070074	8071804	-	8070074;8070627	8070435;8071804	ES	ENSMUST00000082320.12	known	0.13	1	6.5	1	6;7	n	0.00	0	8.0	0	7;9	n	0.29	2	5.0	2	2;8	y	0.00	0	4.0	0	4;4	n	0.00	0	5.0	0	2;8	n	0.00	0	3.0	0	3;3	n	0.00	0	8.0	0	10;6	n	0.00	0	5.0	0	3;7	n	0.10	1	9.5	1	7;12	n	0.00	0	12.0	0	12;12	n	0.00	0	5.0	0	5;5	n	0.00	0	13.5	0	16;11	n	ENSMUSG00000031169.14	Porcn	chrX	protein_coding	porcupine O-acyltransferase
known_NIR_21013	chrX	8070556	8071804	-	8070627	8071804	A3SS	ENSMUST00000082320.12	known	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.42	5	7	5	7	y	0.00	0	12	0	12	n	0.14	2	12	2	12	y	0.17	1	5	1	5	n	0.00	0	11	0	11	n	ENSMUSG00000031169.14	Porcn	chrX	protein_coding	porcupine O-acyltransferase
known_NIR_21014	chrX	8111669	8111791	-	8111711	8111791	A3SS	ENSMUST00000033513.10	known	0.00	0	38	0	38	n	0.00	0	38	0	38	n	0.00	0	39	0	39	n	0.03	1	37	1	37	n	0.00	0	49	0	49	n	0.00	0	14	0	14	n	0.00	0	32	0	32	n	0.00	0	34	0	34	n	0.00	0	38	0	38	n	0.00	0	39	0	39	n	0.00	0	36	0	36	n	0.04	2	46	2	46	y	ENSMUSG00000031171.12	Ftsj1	chrX	protein_coding	FtsJ RNA methyltransferase homolog 1 (E. coli)
known_NIR_21015	chrX	8111888	8112575	-	8111894	8112575	A3SS	ENSMUST00000033513.10	known	0.91	32	3	32	3	y	0.85	28	5	28	5	y	0.90	45	5	45	5	y	0.80	43	11	43	11	y	0.81	48	11	48	11	y	0.85	29	5	29	5	y	0.82	36	8	36	8	y	0.82	23	5	23	5	y	0.61	23	15	23	15	y	0.91	43	4	43	4	y	0.83	30	6	30	6	y	0.89	54	7	54	7	y	ENSMUSG00000031171.12	Ftsj1	chrX	protein_coding	FtsJ RNA methyltransferase homolog 1 (E. coli)
known_NIR_21016	chrX	84092065	84097577	+	84018371	84097577	A5SS	ENSMUST00000114000.8	known	1.00	9	0	9	0	n	1.00	6	0	6	0	n	1.00	8	0	8	0	n	1.00	12	0	12	0	n	1.00	25	0	25	0	n	1.00	14	0	14	0	n	0.83	19	4	19	4	y	1.00	23	0	23	0	n	1.00	8	0	8	0	n	1.00	14	0	14	0	n	1.00	10	0	10	0	n	1.00	16	0	16	0	n	ENSMUSG00000045103.20	Dmd	chrX	protein_coding	dystrophin, muscular dystrophy
known_NIR_21017	chrX	84234308	84246077	+	84234308;84241141	84241110;84246077	ES	ENSMUST00000114000.8	known	0.81	34	8.0	34	10;6	y	0.79	11	3.0	11	2;4	y	0.57	15	11.5	15	14;9	y	0.83	31	6.5	31	4;9	y	0.64	35	20.0	35	17;23	y	0.82	35	7.5	35	8;7	y	0.60	17	11.5	17	6;17	y	0.87	26	4.0	26	6;2	y	0.74	14	5.0	14	5;5	y	0.78	28	8.0	28	9;7	y	0.78	14	4.0	14	3;5	y	0.79	36	9.5	36	8;11	y	ENSMUSG00000045103.20	Dmd	chrX	protein_coding	dystrophin, muscular dystrophy
known_NIR_21018	chrX	84748002;84749930	84749844;84754657	-	84748002	84754657	cassetteExon	ENSMUST00000142152.2	known	0.01	1.5	138	0;3	138	n	0.02	2.0	121	3;1	121	n	0.04	9.0	235	9;9	235	y	0.04	7.0	166	5;9	166	y	0.02	5.0	311	7;3	311	y	0.00	0.5	101	1;0	101	n	0.02	4.5	263	6;3	263	y	0.00	0.5	127	1;0	127	n	0.03	5.5	153	4;7	153	y	0.01	3.5	258	4;3	258	y	0.01	1.5	177	1;2	177	n	0.01	2.5	218	2;3	218	y	ENSMUSG00000025059.17	Gk	chrX	protein_coding	glycerol kinase
known_NIR_21019	chrX	84750791	84754657	-	84748002	84754657	A3SS	ENSMUST00000142152.2	known	0.01	2	138	2	138	y	0.01	1	121	1	121	n	0.00	0	235	0	235	n	0.01	1	166	1	166	n	0.00	0	311	0	311	n	0.00	0	101	0	101	n	0.00	1	263	1	263	n	0.00	0	127	0	127	n	0.00	0	153	0	153	n	0.03	8	258	8	258	y	0.02	4	177	4	177	y	0.00	0	218	0	218	n	ENSMUSG00000025059.17	Gk	chrX	protein_coding	glycerol kinase
known_NIR_21020	chrX	84750791	84754657	-	84749930	84754657	A3SS	ENSMUST00000156390.8	known	0.40	2	3	2	3	n	0.50	1	1	1	1	n	0.00	0	9	0	9	n	0.10	1	9	1	9	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.73	8	3	8	3	y	0.67	4	2	4	2	n	0.00	0	3	0	3	n	ENSMUSG00000025059.17	Gk	chrX	protein_coding	glycerol kinase
known_NIR_21021	chrX	84780955;84782845	84782828;84783901	-	84780955	84783901	cassetteExon	ENSMUST00000142152.2	known	0.06	6.5	103	6;7	103	y	0.07	4.5	63	4;5	63	y	0.08	15.0	173	14;16	173	y	0.06	9.0	151	8;10	151	y	0.12	27.0	200	27;27	200	y	0.11	8.0	64	7;9	64	y	0.13	24.5	169	23;26	169	y	0.08	7.0	84	7;7	84	y	0.05	6.0	111	6;6	111	y	0.04	6.5	156	6;7	156	y	0.10	12.0	104	9;15	104	y	0.03	4.5	152	6;3	152	y	ENSMUSG00000025059.17	Gk	chrX	protein_coding	glycerol kinase
known_NIR_21022	chrX	84789907	84797938	-	84789907;84793301	84793218;84797938	ES	ENSMUST00000142152.2	known	0.72	58	22.0	58	20;24	y	0.76	43	13.5	43	13;14	y	0.74	125	43.5	125	54;33	y	0.74	103	35.5	103	30;41	y	0.83	208	44.0	208	37;51	y	0.83	72	15.0	72	18;12	y	0.77	127	38.5	127	40;37	y	0.81	97	23.0	97	20;26	y	0.70	56	24.0	56	25;23	y	0.70	125	53.0	125	53;53	y	0.81	81	19.0	81	20;18	y	0.64	91	51.0	91	53;49	y	ENSMUSG00000025059.17	Gk	chrX	protein_coding	glycerol kinase
known_NIR_21023	chrX	93145986	93166338	-	93145986	93157802	A5SS&ES	ENSMUST00000088102.12	known	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.20	2	8	2	8	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	ENSMUSG00000079509.11	Zfx	chrX	protein_coding	zinc finger protein X-linked
known_NIR_21024	chrX	93145986	93166674	-	93145986	93157802	A5SS&ES	ENSMUST00000135661.2	known	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.40	4	6	4	6	y	0.14	1	6	1	6	n	0.18	2	9	2	9	y	0.22	2	7	2	7	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.10	1	9	1	9	n	ENSMUSG00000079509.11	Zfx	chrX	protein_coding	zinc finger protein X-linked
known_NIR_21025	chrX	93145986	93166674	-	93145986;93157869	93157802;93166674	ES	ENSMUST00000088102.12	known	0.40	1	1.5	1	3;0	n	0.00	0	2.0	0	3;1	n	0.50	4	4.0	4	6;2	y	0.22	1	3.5	1	6;1	n	0.20	2	8.0	2	9;7	y	0.25	2	6.0	2	7;5	y	0.00	0	2.0	0	2;2	n	0.00	0	6.5	0	8;5	n	0.00	0	1.0	0	2;0	n	0.00	0	2.5	0	2;3	n	0.00	0	4.0	0	5;3	n	0.14	1	6.0	1	9;3	n	ENSMUSG00000079509.11	Zfx	chrX	protein_coding	zinc finger protein X-linked
known_NIR_21026	chrX	93255388	93256377	-	93255388	93256171	5pMXE	ENSMUST00000050328.15	known	0.00	0	80	0	80	n	0.00	0	45	0	45	n	0.00	0	136	0	136	n	0.01	1	143	1	143	n	0.00	0	135	0	135	n	0.00	0	65	0	65	n	0.02	2	125	2	125	y	0.00	0	80	0	80	n	0.00	0	81	0	81	n	0.00	0	161	0	161	n	0.00	0	86	0	86	n	0.01	1	104	1	104	n	ENSMUSG00000035150.16	Eif2s3x	chrX	protein_coding	eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked
known_NIR_21027	chrX	93279026	93296021	+	93279026;93285601	93285551;93296021	ES	ENSMUST00000153900.8	known	0.00	0	2.5	0	3;2	n	0.00	0	0.5	0	0;1	n	0.15	1	5.5	1	6;5	n	0.29	2	5.0	2	5;5	y	0.00	0	5.5	0	4;7	n	0.00	0	2.0	0	1;3	n	0.00	0	5.5	0	5;6	n	1.00	1	0.0	1	0;0	n	0.00	0	2.5	0	2;3	n	0.00	0	3.0	0	4;2	n	0.00	0	5.5	0	6;5	n	0.00	0	7.5	0	7;8	n	ENSMUSG00000043929.17	Klhl15	chrX	protein_coding	kelch-like 15
known_NIR_21028	chrX	93296732	93315962	+	93296732	93297546	3pMXE	ENSMUST00000113908.8	known	1.00	2	0	2	0	n	0.14	1	6	1	6	n	0.38	5	8	5	8	y	0.00	0	5	0	5	n	0.33	3	6	3	6	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.17	1	5	1	5	n	0.00	0	6	0	6	n	0.33	1	2	1	2	n	ENSMUSG00000043929.17	Klhl15	chrX	protein_coding	kelch-like 15
known_NIR_21029	chrX	93410932	93423532	+	93410768	93423532	A5SS	ENSMUST00000113898.8	known	0.05	1	21	1	21	n	0.28	5	13	5	13	y	0.06	2	29	2	29	y	0.08	3	35	3	35	y	0.07	3	38	3	38	y	0.00	0	16	0	16	n	0.02	1	41	1	41	n	0.07	1	14	1	14	n	0.07	2	25	2	25	y	0.16	4	21	4	21	y	0.17	5	24	5	24	y	0.27	8	22	8	22	y	ENSMUSG00000079508.9	Apoo	chrX	protein_coding	apolipoprotein O
known_NIR_21030	chrX	93411091	93423532	+	93410768	93423532	A5SS	ENSMUST00000113898.8	known	0.00	0	21	0	21	n	0.07	1	13	1	13	n	0.00	0	29	0	29	n	0.00	0	35	0	35	n	0.00	0	38	0	38	n	0.00	0	16	0	16	n	0.00	0	41	0	41	n	0.00	0	14	0	14	n	0.04	1	25	1	25	n	0.09	2	21	2	21	y	0.04	1	24	1	24	n	0.08	2	22	2	22	y	ENSMUSG00000079508.9	Apoo	chrX	protein_coding	apolipoprotein O
known_NIR_21031	chrX	93411091	93423532	+	93410932	93423532	A5SS	ENSMUST00000113896.8	known	0.00	0	1	0	1	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.33	2	4	2	4	n	0.17	1	5	1	5	n	0.20	2	8	2	8	y	ENSMUSG00000079508.9	Apoo	chrX	protein_coding	apolipoprotein O
known_NIR_21032	chrX	94990679;94991054	94991004;94991376	-	94990679	94991376	cassetteExon	ENSMUST00000079987.13	known	0.00	0.0	61	0;0	61	n	0.00	0.0	42	0;0	42	n	0.00	0.0	55	0;0	55	n	0.00	0.0	70	0;0	70	n	0.00	0.0	62	0;0	62	n	0.04	1.5	38	1;2	38	n	0.08	4.5	51	6;3	51	y	0.00	0.0	35	0;0	35	n	0.00	0.0	54	0;0	54	n	0.01	0.5	73	0;1	73	n	0.00	0.0	42	0;0	42	n	0.02	1.0	59	2;0	59	n	ENSMUSG00000057421.13	Las1l	chrX	protein_coding	LAS1-like (S. cerevisiae)
known_NIR_21033	chrX	95312790	95313162	-	95312738	95313162	A3SS	ENSMUST00000050707.3	known	0.00	0	102	0	102	n	0.00	0	82	0	82	n	0.00	0	49	0	49	n	0.00	0	44	0	44	n	0.01	1	123	1	123	n	0.00	0	34	0	34	n	0.00	0	80	0	80	n	0.00	0	49	0	49	n	0.00	0	51	0	51	n	0.03	2	56	2	56	y	0.02	2	88	2	88	y	0.00	0	46	0	46	n	ENSMUSG00000044206.4	Vsig4	chrX	protein_coding	V-set and immunoglobulin domain containing 4
known_NIR_21034	chrX	95313218	95334359	-	95313218	95334096	A5SS	ENSMUST00000050707.3	known	0.05	5	100	5	100	y	0.06	4	66	4	66	y	0.06	2	33	2	33	y	0.06	3	47	3	47	y	0.06	7	104	7	104	y	0.08	2	22	2	22	y	0.03	2	75	2	75	y	0.05	2	42	2	42	y	0.06	3	48	3	48	y	0.02	1	48	1	48	n	0.11	8	64	8	64	y	0.08	4	44	4	44	y	ENSMUSG00000044206.4	Vsig4	chrX	protein_coding	V-set and immunoglobulin domain containing 4
known_NIR_21035	chrX	98181930	98188898	+	98180619	98188898	A5SS	ENSMUST00000052839.7	known	0.00	0	21	0	21	n	0.06	1	15	1	15	n	0.00	0	35	0	35	n	0.00	0	26	0	26	n	0.00	0	36	0	36	n	0.00	0	22	0	22	n	0.00	0	34	0	34	n	0.00	0	11	0	11	n	0.12	2	15	2	15	y	0.00	0	32	0	32	n	0.00	0	25	0	25	n	0.00	0	14	0	14	n	ENSMUSG00000031217.9	Efnb1	chrX	protein_coding	ephrin B1
known_NIR_21036	chrX	98511179	98511729	-	98511188	98511729	A3SS	ENSMUST00000113790.8	known	0.00	0	31	0	31	n	0.03	1	38	1	38	n	0.00	0	30	0	30	n	0.06	4	58	4	58	y	0.07	4	54	4	54	y	0.17	2	10	2	10	y	0.13	5	34	5	34	y	0.09	2	20	2	20	y	0.08	3	35	3	35	y	0.09	4	41	4	41	y	0.17	8	38	8	38	y	0.15	8	45	8	45	y	ENSMUSG00000034403.17	Pja1	chrX	protein_coding	praja ring finger ubiquitin ligase 1
known_NIR_21037	chrX	98512206	98514223	-	98511920	98514223	A3SS	ENSMUST00000113792.2	known	0.09	9	95	9	95	y	0.06	5	85	5	85	y	0.10	11	97	11	97	y	0.05	9	182	9	182	y	0.06	9	150	9	150	y	0.08	4	46	4	46	y	0.04	6	136	6	136	y	0.13	9	62	9	62	y	0.08	8	97	8	97	y	0.06	9	134	9	134	y	0.05	7	131	7	131	y	0.04	5	109	5	109	y	ENSMUSG00000034403.17	Pja1	chrX	protein_coding	praja ring finger ubiquitin ligase 1
known_NIR_21038	chrX	99668993	99669422	-	99668993	99669492	A5SS	ENSMUST00000015812.12	known	0.43	26	34	26	34	y	0.29	16	39	16	39	y	0.43	35	46	35	46	y	0.56	39	31	39	31	y	0.50	37	37	37	37	y	0.46	23	27	23	27	y	0.38	26	43	26	43	y	0.47	21	24	21	24	y	0.45	25	31	25	31	y	0.34	20	39	20	39	y	0.37	23	39	23	39	y	0.25	18	53	18	53	y	ENSMUSG00000015668.14	Pdzd11	chrX	protein_coding	PDZ domain containing 11
known_NIR_21039	chrX	99820978	99840292	+	99820087	99840292	A5SS	ENSMUST00000000901.13	known	1.00	12	0	12	0	n	0.85	11	2	11	2	y	0.73	8	3	8	3	y	1.00	17	0	17	0	n	0.95	19	1	19	1	n	0.89	8	1	8	1	n	0.95	19	1	19	1	n	1.00	19	0	19	0	n	0.88	7	1	7	1	n	0.87	26	4	26	4	y	0.92	11	1	11	1	n	1.00	19	0	19	0	n	ENSMUSG00000000881.13	Dlg3	chrX	protein_coding	discs large MAGUK scaffold protein 3
known_NIR_21040	chrY	1012169	1014634	+	1012169;1013473	1013379;1014634	ES	ENSMUST00000091197.4	known	0.06	6	95.5	6	103;88	y	0.00	0	100.0	0	97;103	n	0.04	6	151.0	6	157;145	y	0.07	9	128.0	9	130;126	y	0.04	6	150.5	6	153;148	y	0.05	3	52.5	3	48;57	y	0.04	6	134.5	6	147;122	y	0.01	1	86.5	1	87;86	n	0.05	5	94.0	5	109;79	y	0.04	6	146.0	6	144;148	y	0.05	4	76.5	4	73;80	y	0.06	9	137.5	9	143;132	y	ENSMUSG00000069049.12	Eif2s3y	chrY	protein_coding	eukaryotic translation initiation factor 2, subunit 3, structural gene Y-linked
known_NIR_21041	chrY	1158634	1168090	-	1161230	1168090	3pMXE	ENSMUST00000133976.2	known	1.00	15	0	15	0	n	0.64	7	4	7	4	y	1.00	10	0	10	0	n	1.00	14	0	14	0	n	0.89	17	2	17	2	y	0.86	6	1	6	1	n	1.00	14	0	14	0	n	1.00	10	0	10	0	n	1.00	2	0	2	0	n	1.00	10	0	10	0	n	0.83	10	2	10	2	y	1.00	10	0	10	0	n	ENSMUSG00000068457.15	Uty	chrY	protein_coding	ubiquitously transcribed tetratricopeptide repeat containing, Y-linked
known_NIR_21042	chrY	1158634;1161230	1161175;1168090	-	1158634	1168090	cassetteExon	ENSMUST00000143286.8	known	0.00	0.0	15	0;0	15	n	0.33	3.5	7	3;4	7	y	0.13	1.5	10	3;0	10	n	0.00	0.0	14	0;0	14	n	0.06	1.0	17	0;2	17	n	0.25	2.0	6	3;1	6	n	0.12	2.0	14	4;0	14	n	0.00	0.0	10	0;0	10	n	0.33	1.0	2	2;0	2	n	0.00	0.0	10	0;0	10	n	0.09	1.0	10	0;2	10	n	0.05	0.5	10	1;0	10	n	ENSMUSG00000068457.15	Uty	chrY	protein_coding	ubiquitously transcribed tetratricopeptide repeat containing, Y-linked
known_NIR_21043	chrY	1168185	1169965	-	1168185	1169123	5pMXE	ENSMUST00000133976.2	known	0.00	0	14	0	14	n	0.22	2	7	2	7	n	0.41	7	10	7	10	y	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.25	1	3	1	3	n	0.00	0	13	0	13	n	0.12	1	7	1	7	n	0.07	1	13	1	13	n	0.16	3	16	3	16	y	0.25	2	6	2	6	n	0.14	2	12	2	12	y	ENSMUSG00000068457.15	Uty	chrY	protein_coding	ubiquitously transcribed tetratricopeptide repeat containing, Y-linked
known_NIR_21044	chrY	1168185;1169257	1169123;1169965	-	1168185	1169965	cassetteExon	ENSMUST00000143286.8	known	1.00	10.0	0	14;6	0	n	0.76	6.5	2	7;6	2	y	0.65	13.0	7	10;16	7	y	1.00	11.0	0	9;13	0	n	1.00	10.0	0	11;9	0	n	0.71	2.5	1	3;2	1	n	1.00	10.0	0	13;7	0	n	0.88	7.0	1	7;7	1	n	0.90	9.5	1	13;6	1	n	0.85	16.5	3	16;17	3	y	0.67	4.0	2	6;2	2	y	0.83	9.5	2	12;7	2	y	ENSMUSG00000068457.15	Uty	chrY	protein_coding	ubiquitously transcribed tetratricopeptide repeat containing, Y-linked
known_NIR_21045	chrY	1199513	1239711	-	1199513;1224546	1224497;1239711	ES	ENSMUST00000069309.14	known	0.33	2	4.0	2	2;6	y	0.00	0	1.5	0	3;0	n	0.00	0	9.0	0	9;9	n	0.00	0	6.0	0	7;5	n	0.00	0	10.0	0	12;8	n	0.00	0	4.5	0	6;3	n	0.00	0	9.5	0	8;11	n	0.12	1	7.5	1	7;8	n	0.00	0	7.0	0	8;6	n	0.00	0	12.0	0	11;13	n	0.00	0	1.5	0	2;1	n	0.00	0	8.5	0	10;7	n	ENSMUSG00000068457.15	Uty	chrY	protein_coding	ubiquitously transcribed tetratricopeptide repeat containing, Y-linked
known_NIR_21046	chrY	1245216	1245407	-	1245219	1245407	A3SS	ENSMUST00000143286.8	known	-	-	-	-	-	-	0.00	0	1	0	1	n	0.12	2	14	2	14	y	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.10	1	9	1	9	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.12	1	7	1	7	n	0.00	0	4	0	4	n	0.22	2	7	2	7	n	ENSMUSG00000068457.15	Uty	chrY	protein_coding	ubiquitously transcribed tetratricopeptide repeat containing, Y-linked
known_NIR_21047	chrY	1282968	1284322	-	1282948	1284322	A3SS	ENSMUST00000091190.12	known	0.00	0	35	0	35	n	0.00	0	21	0	21	n	0.00	0	57	0	57	n	0.00	0	59	0	59	n	0.01	1	78	1	78	n	0.00	0	39	0	39	n	0.00	0	37	0	37	n	0.00	0	43	0	43	n	0.05	2	42	2	42	y	0.00	0	59	0	59	n	0.05	1	19	1	19	n	0.01	1	70	1	70	n	ENSMUSG00000069045.12	Ddx3y	chrY	protein_coding	DEAD box helicase 3, Y-linked
known_NIR_21048	chrY	90797248	90804594	+	90797248	90804565	A3SS	ENSMUST00000179483.9	known	0.12	6	43	6	43	y	0.20	7	28	7	28	y	0.10	4	36	4	36	y	0.10	2	19	2	19	y	0.17	15	71	15	71	y	0.17	7	34	7	34	y	0.07	5	67	5	67	y	0.00	0	7	0	7	n	0.13	6	39	6	39	y	0.11	5	42	5	42	y	0.13	5	33	5	33	y	0.10	6	53	6	53	y	ENSMUSG00000096768.9	Gm47283	chrY	lncRNA	predicted gene, 47283
known_NIR_21049	chrY	90804949	90827618	+	90804686	90827618	A5SS	ENSMUST00000179483.9	known	0.44	146	186	146	186	y	0.35	60	113	60	113	y	0.40	117	176	117	176	y	0.35	28	53	28	53	y	0.45	276	344	276	344	y	0.39	119	187	119	187	y	0.28	140	359	140	359	y	0.40	21	32	21	32	y	0.40	93	137	93	137	y	0.49	161	167	161	167	y	0.53	136	123	136	123	y	0.33	132	269	132	269	y	ENSMUSG00000096768.9	Gm47283	chrY	lncRNA	predicted gene, 47283
known_NIR_21050	chrY	910586	910657	+	910586	910686	A3SS	ENSMUST00000189069.7	known	0.14	1	6	1	6	n	0.50	2	2	2	2	n	0.30	3	7	3	7	y	0.12	2	14	2	14	y	0.08	1	11	1	11	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.14	1	6	1	6	n	0.25	2	6	2	6	n	0.06	1	15	1	15	n	0.09	1	10	1	10	n	0.07	1	14	1	14	n	ENSMUSG00000056673.15	Kdm5d	chrY	protein_coding	lysine (K)-specific demethylase 5D
known_NIR_21051	chrY	927439	927603	+	927439	927710	A3SS	ENSMUST00000055032.14	known	0.33	5	10	5	10	y	0.56	5	4	5	4	n	0.53	8	7	8	7	y	0.33	8	16	8	16	y	0.38	11	18	11	18	y	0.50	6	6	6	6	y	0.00	0	18	0	18	n	0.22	2	7	2	7	n	0.60	3	2	3	2	n	0.06	1	16	1	16	n	0.29	5	12	5	12	y	0.19	5	21	5	21	y	ENSMUSG00000056673.15	Kdm5d	chrY	protein_coding	lysine (K)-specific demethylase 5D
novel_NIR_1	chr1	10033760	10037324	-	10033746	10037324	A3SS	ENSMUST00000185184.2	novel	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.25	2	6	2	6	y	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	26	0	26	n	ENSMUSG00000099032.3	Tcf24	chr1	protein_coding	transcription factor 24
novel_NIR_2	chr1	105284630	105289314	+	105284682	105289314	A5SS	ENSMUST00000189938.2	novel	0.83	15	3	15	3	y	0.72	13	5	13	5	y	1.00	4	0	4	0	y	0.53	9	8	9	8	y	0.65	11	6	11	6	y	0.60	3	2	3	2	y	0.57	13	10	13	10	y	0.56	5	4	5	4	y	0.42	5	7	5	7	y	0.72	29	11	29	11	y	0.67	10	5	10	5	y	0.64	7	4	7	4	y	ENSMUSG00000097482.3	Gm17634	chr1	lncRNA	predicted gene, 17634
novel_NIR_3	chr1	105284630	105289314	+	105284974	105289314	A5SS	ENSMUST00000181383.3	novel	0.83	15	3	15	3	y	0.54	13	11	13	11	y	0.67	4	2	4	2	y	0.90	9	1	9	1	y	0.73	11	4	11	4	y	0.50	3	3	3	3	y	0.52	13	12	13	12	y	0.83	5	1	5	1	y	0.56	5	4	5	4	y	0.71	29	12	29	12	y	0.67	10	5	10	5	y	0.78	7	2	7	2	y	ENSMUSG00000097482.3	Gm17634	chr1	lncRNA	predicted gene, 17634
novel_NIR_4	chr1	105284682	105285266	+	105284682	105289314	A3SS	ENSMUST00000189938.2	novel	0.00	0	3	0	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.15	2	11	2	11	y	0.00	0	5	0	5	n	0.00	0	4	0	4	n	ENSMUSG00000097482.3	Gm17634	chr1	lncRNA	predicted gene, 17634
novel_NIR_5	chr1	105285316	105289314	+	105284682	105289314	A5SS	ENSMUST00000189938.2	novel	0.00	0	3	0	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.29	2	5	2	5	y	0.00	0	4	0	4	n	ENSMUSG00000097482.3	Gm17634	chr1	lncRNA	predicted gene, 17634
novel_NIR_6	chr1	105285316	105289314	+	105284974	105289314	A5SS	ENSMUST00000181383.3	novel	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.29	2	5	2	5	y	0.00	0	2	0	2	n	ENSMUSG00000097482.3	Gm17634	chr1	lncRNA	predicted gene, 17634
novel_NIR_7	chr1	105493975	105494542	-	105493975	105494229	A5SS	ENSMUST00000190945.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000056536.15	Pign	chr1	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class N
novel_NIR_8	chr1	105493975	105494542	-	105493975	105496501	A5SS	ENSMUST00000190139.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000056536.15	Pign	chr1	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class N
novel_NIR_9	chr1	105493975	105494542	-	105493975	105507647	A5SS	ENSMUST00000070699.15	novel	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.27	3	8	3	8	y	0.17	1	5	1	5	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.07	1	14	1	14	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	ENSMUSG00000056536.15	Pign	chr1	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class N
novel_NIR_10	chr1	105493975	105512714	-	105493975	105494229	5pMXE	ENSMUST00000190945.7	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000056536.15	Pign	chr1	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class N
novel_NIR_11	chr1	105493975	105512714	-	105493975	105496501	5pMXE	ENSMUST00000190139.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000056536.15	Pign	chr1	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class N
novel_NIR_12	chr1	105493975	105512714	-	105493975;105507755	105507647;105512714	ES	ENSMUST00000070699.15	novel	0.00	0	6.5	0	7;6	n	0.22	1	3.5	1	3;4	n	0.00	0	10.0	0	8;12	n	0.00	0	6.5	0	5;8	n	0.00	0	7.0	0	6;8	n	0.00	0	9.0	0	11;7	n	0.15	2	11.5	2	14;9	y	0.00	0	8.5	0	10;7	n	0.00	0	4.0	0	3;5	n	0.00	0	8.5	0	11;6	n	0.00	0	3.0	0	4;2	n	0.00	0	2.5	0	4;1	n	ENSMUSG00000056536.15	Pign	chr1	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class N
novel_NIR_13	chr1	105519486	105525398	-	105519486	105525393	A5SS	ENSMUST00000070699.15	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.25	1	3	1	3	n	0.20	2	8	2	8	y	ENSMUSG00000056536.15	Pign	chr1	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class N
novel_NIR_14	chr1	105607056	105614674	+	105605977	105614674	A5SS	ENSMUST00000186807.7	novel	0.29	2	5	2	5	y	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	ENSMUSG00000026319.14	Relch	chr1	protein_coding	RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing
novel_NIR_15	chr1	105607056	105614674	+	105608820	105614674	A5SS&ES	ENSMUST00000189091.7	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026319.14	Relch	chr1	protein_coding	RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing
novel_NIR_16	chr1	105644574	105644893	+	105644574	105646500	A3SS	ENSMUST00000186807.7	novel	0.20	2	8	2	8	y	0.00	0	7	0	7	n	0.00	0	16	0	16	n	0.00	0	19	0	19	n	0.00	0	24	0	24	n	0.00	0	3	0	3	n	0.00	0	21	0	21	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	20	0	20	n	0.07	1	13	1	13	n	0.00	0	30	0	30	n	ENSMUSG00000026319.14	Relch	chr1	protein_coding	RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing
novel_NIR_17	chr1	105655713	105658935	+	105655713	105658926	A3SS	ENSMUST00000186807.7	novel	0.43	3	4	3	4	y	0.20	1	4	1	4	n	0.26	5	14	5	14	y	0.12	1	7	1	7	n	0.39	9	14	9	14	y	0.00	0	8	0	8	n	0.10	2	19	2	19	n	0.44	4	5	4	5	y	0.22	2	7	2	7	y	0.31	5	11	5	11	y	0.36	5	9	5	9	y	0.15	2	11	2	11	y	ENSMUSG00000026319.14	Relch	chr1	protein_coding	RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing
novel_NIR_18	chr1	105655713	105658938	+	105655713	105658926	A3SS	ENSMUST00000186807.7	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.22	2	7	2	7	y	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	19	0	19	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	ENSMUSG00000026319.14	Relch	chr1	protein_coding	RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing
novel_NIR_19	chr1	105741519	105745399	+	105741519	105745394	A3SS	ENSMUST00000027559.9	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026321.9	Tnfrsf11a	chr1	protein_coding	tumor necrosis factor receptor superfamily, member 11a, NFKB activator
novel_NIR_20	chr1	105916833	105917643	-	105916833	105917902	A5SS	ENSMUST00000185535.2	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.75	3	1	3	1	y	0.00	0	6	0	6	n	ENSMUSG00000099843.2	Gm7160	chr1	lncRNA	predicted gene 7160
novel_NIR_21	chr1	105943823	105944361	+	105943823	105944317	A3SS	ENSMUST00000131830.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038866.16	Zcchc2	chr1	protein_coding	zinc finger, CCHC domain containing 2
novel_NIR_22	chr1	105943823	105944361	+	105943823	105945949	A3SS	ENSMUST00000118196.8	novel	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.15	2	11	2	11	y	0.00	0	24	0	24	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	14	0	14	n	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.00	0	17	0	17	n	ENSMUSG00000038866.16	Zcchc2	chr1	protein_coding	zinc finger, CCHC domain containing 2
novel_NIR_23	chr1	105943823	105944361	+	105943823	105947578	A3SS	ENSMUST00000186983.7	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	ENSMUSG00000038866.16	Zcchc2	chr1	protein_coding	zinc finger, CCHC domain containing 2
novel_NIR_24	chr1	106676668	106680942	-	106675566	106680942	A3SS	ENSMUST00000010049.6	novel	0.00	0	23	0	23	n	0.09	3	29	3	29	n	0.20	8	33	8	33	y	0.00	0	36	0	36	n	0.00	0	47	0	47	n	0.00	0	15	0	15	n	0.04	3	64	3	64	n	0.09	2	20	2	20	n	0.00	0	30	0	30	n	0.05	2	39	2	39	n	0.03	1	31	1	31	n	0.00	0	42	0	42	n	ENSMUSG00000009905.6	Kdsr	chr1	protein_coding	3-ketodihydrosphingosine reductase
novel_NIR_25	chr1	106862294	106866677	+	106862294	106874259	A3SS	ENSMUST00000081277.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000059956.15	Serpinb12	chr1	protein_coding	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 12
novel_NIR_26	chr1	118237596	118238791	-	118237596	118238963	A5SS	ENSMUST00000189768.7	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000026374.15	Tsn	chr1	protein_coding	translin
novel_NIR_27	chr1	119570388	119575819	-	119570388	119576084	A5SS	ENSMUST00000187194.2	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.14	1	6	1	6	n	0.00	0	1	0	1	n	0.22	2	7	2	7	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.50	2	2	2	2	y	0.00	0	7	0	7	n	0.00	0	6	0	6	n	ENSMUSG00000026383.15	Epb41l5	chr1	protein_coding	erythrocyte membrane protein band 4.1 like 5
novel_NIR_28	chr1	119838884	119840684	-	119838884	119840863	A5SS	ENSMUST00000037906.6	novel	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.30	3	7	3	7	y	0.09	1	10	1	10	n	0.14	2	12	2	12	n	0.12	1	7	1	7	n	0.00	0	9	0	9	n	0.12	1	7	1	7	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	ENSMUSG00000036975.6	Tmem177	chr1	protein_coding	transmembrane protein 177
novel_NIR_29	chr1	119838884	119840783	-	119838884	119840863	A5SS	ENSMUST00000037906.6	novel	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.12	1	7	1	7	n	0.00	0	9	0	9	n	0.22	2	7	2	7	y	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	ENSMUSG00000036975.6	Tmem177	chr1	protein_coding	transmembrane protein 177
novel_NIR_30	chr1	120044178	120046796	-	120044178	120047519	A5SS	ENSMUST00000132118.2	novel	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	15	0	15	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.12	1	7	1	7	n	ENSMUSG00000026385.17	Dbi	chr1	protein_coding	diazepam binding inhibitor
novel_NIR_31	chr1	120044178	120047209	-	120044178	120047519	A5SS	ENSMUST00000132118.2	novel	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.06	1	15	1	15	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.12	1	7	1	7	n	ENSMUSG00000026385.17	Dbi	chr1	protein_coding	diazepam binding inhibitor
novel_NIR_32	chr1	120047742	120048008	-	120047742	120048492	A5SS	ENSMUST00000151708.3	novel	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.29	2	5	2	5	y	0.43	3	4	3	4	y	0.11	1	8	1	8	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	ENSMUSG00000026385.17	Dbi	chr1	protein_coding	diazepam binding inhibitor
novel_NIR_33	chr1	120047742	120048285	-	120047742	120048492	A5SS	ENSMUST00000151708.3	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.33	2	4	2	4	y	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.40	2	3	2	3	y	ENSMUSG00000026385.17	Dbi	chr1	protein_coding	diazepam binding inhibitor
novel_NIR_34	chr1	120047742	120048686	-	120047742	120047851	5pMXE	ENSMUST00000128408.8	novel	0.04	2	52	2	52	n	0.09	11	105	11	105	n	0.11	16	133	16	133	n	0.13	11	74	11	74	n	0.10	12	105	12	105	n	0.17	8	40	8	40	y	0.07	9	124	9	124	n	0.04	3	77	3	77	n	0.16	12	62	12	62	y	0.15	17	95	17	95	y	0.15	17	97	17	97	y	0.11	10	82	10	82	n	ENSMUSG00000026385.17	Dbi	chr1	protein_coding	diazepam binding inhibitor
novel_NIR_35	chr1	120047742	120048686	-	120047742	120048492	5pMXE	ENSMUST00000151708.3	novel	0.40	2	3	2	3	y	0.79	11	3	11	3	y	0.76	16	5	16	5	y	0.73	11	4	11	4	y	0.60	12	8	12	8	y	0.50	8	8	8	8	y	0.50	9	9	9	9	y	0.43	3	4	3	4	y	0.63	12	7	12	7	y	0.61	17	11	17	11	y	0.65	17	9	17	9	y	0.77	10	3	10	3	y	ENSMUSG00000026385.17	Dbi	chr1	protein_coding	diazepam binding inhibitor
novel_NIR_36	chr1	121240054	121247358	-	121233676	121247358	A3SS	ENSMUST00000160688.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	ENSMUSG00000003721.15	Insig2	chr1	protein_coding	insulin induced gene 2
novel_NIR_37	chr1	121240054	121247358	-	121240054	121255420	A5SS	ENSMUST00000186915.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	n	0.33	1	2	1	2	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	n	1.00	4	0	4	0	n	-	-	-	-	-	-	0.83	5	1	5	1	y	0.00	0	1	0	1	n	ENSMUSG00000003721.15	Insig2	chr1	protein_coding	insulin induced gene 2
novel_NIR_38	chr1	121240054	121260221	-	121240054	121255420	5pMXE	ENSMUST00000186915.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000003721.15	Insig2	chr1	protein_coding	insulin induced gene 2
novel_NIR_39	chr1	121240054;121247634	121247358;121255420	-	121240054	121255420	cassetteExon	ENSMUST00000186915.2	novel	-	-	-	-	-	-	1.00	1.0	0	0;2	0	n	1.00	1.5	0	2;1	0	n	0.33	1.0	2	1;1	2	n	1.00	1.0	0	2;0	0	n	1.00	0.5	0	1;0	0	n	1.00	3.5	0	1;6	0	n	1.00	3.5	0	3;4	0	y	1.00	3.0	0	4;2	0	y	1.00	0.5	0	0;1	0	n	0.71	2.5	1	5;0	1	n	0.50	1.0	1	0;2	1	n	ENSMUSG00000003721.15	Insig2	chr1	protein_coding	insulin induced gene 2
novel_NIR_40	chr1	121245275	121247326	-	121234692	121247326	A3SS	ENSMUST00000162582.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000003721.15	Insig2	chr1	protein_coding	insulin induced gene 2
novel_NIR_41	chr1	121246724	121247326	-	121234692	121247326	A3SS	ENSMUST00000162582.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000003721.15	Insig2	chr1	protein_coding	insulin induced gene 2
novel_NIR_42	chr1	121247634	121255420	-	121240054	121255420	A3SS	ENSMUST00000186915.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	n	1.00	4	0	4	0	n	1.00	2	0	2	0	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	ENSMUSG00000003721.15	Insig2	chr1	protein_coding	insulin induced gene 2
novel_NIR_43	chr1	121247634	121255420	-	121247634	121250868	5pMXE	ENSMUST00000162790.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000003721.15	Insig2	chr1	protein_coding	insulin induced gene 2
novel_NIR_44	chr1	121247634	121255420	-	121247634	121255250	5pMXE	ENSMUST00000159085.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000003721.15	Insig2	chr1	protein_coding	insulin induced gene 2
novel_NIR_45	chr1	121247634	121255420	-	121247634	121255295	5pMXE	ENSMUST00000159125.2	novel	-	-	-	-	-	-	0.33	2	4	2	4	y	0.10	1	9	1	9	n	0.20	1	4	1	4	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.46	6	7	6	7	y	0.40	4	6	4	6	y	0.29	2	5	2	5	y	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.29	2	5	2	5	y	ENSMUSG00000003721.15	Insig2	chr1	protein_coding	insulin induced gene 2
novel_NIR_46	chr1	121247634	121255420	-	121247634	121260221	A5SS	ENSMUST00000161068.2	novel	0.00	0	11	0	11	n	0.29	2	5	2	5	y	0.02	1	44	1	44	n	0.05	1	18	1	18	n	0.00	0	28	0	28	n	0.00	0	77	0	77	n	0.10	6	55	6	55	n	0.12	4	28	4	28	n	0.14	2	12	2	12	n	0.07	1	13	1	13	n	0.00	0	26	0	26	n	0.14	2	12	2	12	n	ENSMUSG00000003721.15	Insig2	chr1	protein_coding	insulin induced gene 2
novel_NIR_47	chr1	121247634	121255420	-	121247701	121255420	A3SS	ENSMUST00000003818.14	novel	0.00	0	12	0	12	n	0.29	2	5	2	5	y	0.02	1	43	1	43	n	0.03	1	33	1	33	n	0.00	0	38	0	38	n	0.00	0	17	0	17	n	0.11	6	47	6	47	n	0.14	4	25	4	25	n	0.08	2	24	2	24	n	0.02	1	51	1	51	n	0.00	0	33	0	33	n	0.05	2	37	2	37	n	ENSMUSG00000003721.15	Insig2	chr1	protein_coding	insulin induced gene 2
novel_NIR_48	chr1	121247701	121259630	-	121247701	121255295	5pMXE	ENSMUST00000161818.2	novel	0.00	0	7	0	7	n	0.12	1	7	1	7	n	0.00	0	31	0	31	n	0.08	1	12	1	12	n	0.07	1	14	1	14	n	0.25	3	9	3	9	y	0.00	0	23	0	23	n	0.06	1	15	1	15	n	0.00	0	11	0	11	n	0.00	0	20	0	20	n	0.00	0	15	0	15	n	0.00	0	18	0	18	n	ENSMUSG00000003721.15	Insig2	chr1	protein_coding	insulin induced gene 2
novel_NIR_49	chr1	121247701	121259630	-	121247701	121255420	5pMXE	ENSMUST00000003818.14	novel	0.00	0	12	0	12	n	0.17	1	5	1	5	n	0.00	0	43	0	43	n	0.03	1	33	1	33	n	0.03	1	38	1	38	n	0.15	3	17	3	17	y	0.00	0	47	0	47	n	0.04	1	25	1	25	n	0.00	0	24	0	24	n	0.00	0	51	0	51	n	0.00	0	33	0	33	n	0.00	0	37	0	37	n	ENSMUSG00000003721.15	Insig2	chr1	protein_coding	insulin induced gene 2
novel_NIR_50	chr1	121247701	121259630	-	121247701	121255450	5pMXE	ENSMUST00000160968.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000003721.15	Insig2	chr1	protein_coding	insulin induced gene 2
novel_NIR_51	chr1	121376009	121377240	+	121376009	121377085	A3SS	ENSMUST00000155673.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026339.19	Ccdc93	chr1	protein_coding	coiled-coil domain containing 93
novel_NIR_52	chr1	121376009	121377240	+	121376009	121383800	A3SS	ENSMUST00000036025.16	novel	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.17	2	10	2	10	y	0.00	0	2	0	2	n	0.00	0	15	0	15	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	ENSMUSG00000026339.19	Ccdc93	chr1	protein_coding	coiled-coil domain containing 93
novel_NIR_53	chr1	121493897	121494262	-	121493897	121495297	A5SS	ENSMUST00000131471.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.15	2	11	2	11	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000001674.12	Ddx18	chr1	protein_coding	DEAD box helicase 18
novel_NIR_54	chr1	125489717	125490012	+	125488554	125490012	A5SS	ENSMUST00000190037.7	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	17	0	17	n	0.00	0	11	0	11	n	0.20	2	8	2	8	y	0.00	0	8	0	8	n	0.10	1	9	1	9	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.25	1	3	1	3	n	0.00	0	4	0	4	n	ENSMUSG00000026342.11	Slc35f5	chr1	protein_coding	solute carrier family 35, member F5
novel_NIR_55	chr1	125515192	125517554	+	125515192	125517576	A3SS	ENSMUST00000189443.2	novel	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.44	4	5	4	5	y	0.00	0	8	0	8	n	0.00	0	9	0	9	n	ENSMUSG00000026342.11	Slc35f5	chr1	protein_coding	solute carrier family 35, member F5
novel_NIR_56	chr1	125515192	125517654	+	125515192	125517576	A3SS	ENSMUST00000189443.2	novel	0.20	2	8	2	8	y	0.00	0	5	0	5	n	0.17	2	10	2	10	y	0.10	1	9	1	9	n	0.25	2	6	2	6	y	0.14	1	6	1	6	n	0.00	0	12	0	12	n	0.22	2	7	2	7	y	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	ENSMUSG00000026342.11	Slc35f5	chr1	protein_coding	solute carrier family 35, member F5
novel_NIR_57	chr1	127596507	127658192	-	127596507	127605168	5pMXE	ENSMUST00000027585.14	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026347.14	Tmem163	chr1	protein_coding	transmembrane protein 163
novel_NIR_58	chr1	127596507	127660152	-	127596507	127605168	5pMXE	ENSMUST00000027585.14	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026347.14	Tmem163	chr1	protein_coding	transmembrane protein 163
novel_NIR_59	chr1	127681618	127687396	+	127681618;127685836	127685741;127687396	ES	ENSMUST00000038006.8	novel	0.00	0	21.5	0	18;25	n	0.00	0	13.5	0	10;17	n	0.00	0	7.5	0	9;6	n	0.03	1	28.0	1	31;25	n	0.00	0	26.0	0	29;23	n	0.05	1	18.0	1	13;23	n	0.00	0	14.0	0	15;13	n	0.00	0	9.5	0	9;10	n	0.14	4	24.0	4	24;24	n	0.22	5	17.5	5	14;21	y	0.00	0	17.0	0	14;20	n	0.13	12	77.0	12	70;84	n	ENSMUSG00000026348.8	Acmsd	chr1	protein_coding	amino carboxymuconate semialdehyde decarboxylase
novel_NIR_60	chr1	127681618	127687396	+	127684607	127687396	5pMXE	ENSMUST00000186537.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	12	0	12	0	y	ENSMUSG00000026348.8	Acmsd	chr1	protein_coding	amino carboxymuconate semialdehyde decarboxylase
novel_NIR_61	chr1	127681685	127683522	-	127681685	127701665	A5SS	ENSMUST00000185310.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000102014.2	2900009J06Rik	chr1	lncRNA	RIKEN cDNA 2900009J06 gene
novel_NIR_62	chr1	127681690	127683522	-	127681690	127701665	A5SS	ENSMUST00000188163.2	novel	1.00	6	0	6	0	y	1.00	3	0	3	0	y	1.00	8	0	8	0	y	0.80	8	2	8	2	y	0.00	0	4	0	4	n	1.00	2	0	2	0	y	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.83	5	1	5	1	y	0.50	2	2	2	2	y	0.33	1	2	1	2	n	0.87	13	2	13	2	y	ENSMUSG00000102014.2	2900009J06Rik	chr1	lncRNA	RIKEN cDNA 2900009J06 gene
novel_NIR_63	chr1	127725463	127725578	+	127725456	127725578	A5SS	ENSMUST00000153359.2	novel	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.60	3	2	3	2	y	0.17	1	5	1	5	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.25	1	3	1	3	n	ENSMUSG00000026349.15	Ccnt2	chr1	protein_coding	cyclin T2
novel_NIR_64	chr1	127796717	127796908	+	127796717	127801817	A3SS	ENSMUST00000037649.6	novel	0.00	0	11	0	11	n	0.17	2	10	2	10	y	0.00	0	41	0	41	n	0.00	0	27	0	27	n	0.00	0	30	0	30	n	0.18	2	9	2	9	y	0.00	0	22	0	22	n	0.00	0	20	0	20	n	0.00	0	21	0	21	n	0.00	0	30	0	30	n	0.00	0	19	0	19	n	0.04	1	25	1	25	n	ENSMUSG00000036104.13	Rab3gap1	chr1	protein_coding	RAB3 GTPase activating protein subunit 1
novel_NIR_65	chr1	127804309	127816893	+	127804309	127809738	3pMXE	ENSMUST00000186865.7	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036104.13	Rab3gap1	chr1	protein_coding	RAB3 GTPase activating protein subunit 1
novel_NIR_66	chr1	128102969	128104561	+	128102969	128106620	A3SS	ENSMUST00000191016.7	novel	0.16	4	21	4	21	y	0.29	4	10	4	10	y	0.00	0	23	0	23	n	0.38	6	10	6	10	y	0.00	0	30	0	30	n	0.31	4	9	4	9	y	0.05	1	19	1	19	n	0.05	1	18	1	18	n	0.00	0	12	0	12	n	0.00	0	18	0	18	n	0.11	1	8	1	8	n	0.00	0	24	0	24	n	ENSMUSG00000056211.14	R3hdm1	chr1	protein_coding	R3H domain containing 1
novel_NIR_67	chr1	128109901	128112137	+	128109949	128112137	A5SS	ENSMUST00000187900.7	novel	0.67	8	4	8	4	y	0.09	1	10	1	10	n	0.67	8	4	8	4	y	0.26	5	14	5	14	y	0.47	9	10	9	10	y	0.88	7	1	7	1	y	0.22	6	21	6	21	y	0.00	0	3	0	3	n	0.43	3	4	3	4	y	0.56	9	7	9	7	y	0.00	0	10	0	10	n	0.47	7	8	7	8	y	ENSMUSG00000056211.14	R3hdm1	chr1	protein_coding	R3H domain containing 1
novel_NIR_68	chr1	128109901	128114495	+	128109949	128114495	A5SS	ENSMUST00000185853.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.83	5	1	5	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	ENSMUSG00000056211.14	R3hdm1	chr1	protein_coding	R3H domain containing 1
novel_NIR_69	chr1	128109901	128114495	+	128112391	128114495	A5SS&ES	ENSMUST00000187900.7	novel	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	17	0	17	n	0.28	5	13	5	13	y	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	19	0	19	n	0.00	0	19	0	19	n	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.15	2	11	2	11	y	0.00	0	13	0	13	n	ENSMUSG00000056211.14	R3hdm1	chr1	protein_coding	R3H domain containing 1
novel_NIR_70	chr1	128172278	128179940	+	128171857	128179940	A5SS	ENSMUST00000190736.7	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026353.10	Ubxn4	chr1	protein_coding	UBX domain protein 4
novel_NIR_71	chr1	128187274	128188568	+	128187274	128188571	A3SS	ENSMUST00000027592.6	novel	0.09	20	196	20	196	n	0.12	24	177	24	177	n	0.15	61	346	61	346	y	0.11	33	277	33	277	n	0.12	44	320	44	320	n	0.11	25	195	25	195	n	0.13	38	248	38	248	n	0.13	31	216	31	216	n	0.08	16	193	16	193	n	0.07	14	201	14	201	n	0.08	19	212	19	212	n	0.11	24	196	24	196	n	ENSMUSG00000026353.10	Ubxn4	chr1	protein_coding	UBX domain protein 4
novel_NIR_72	chr1	128283396	128291917	-	128283396	128287196	5pMXE	ENSMUST00000027601.11	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	12	0	12	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000026355.12	Mcm6	chr1	protein_coding	minichromosome maintenance complex component 6
novel_NIR_73	chr1	130566970	130568066	-	130566970	130570710	A5SS	ENSMUST00000171642.8	novel	0.14	14	85	14	85	n	0.17	16	80	16	80	y	0.16	43	230	43	230	y	0.10	10	87	10	87	n	0.10	24	225	24	225	n	0.16	28	142	28	142	y	0.13	24	163	24	163	n	0.11	16	129	16	129	n	0.09	6	62	6	62	n	0.07	7	99	7	99	n	0.03	2	64	2	64	n	0.12	10	73	10	73	n	ENSMUSG00000026405.15	C4bp	chr1	protein_coding	complement component 4 binding protein
novel_NIR_74	chr1	130585320	130589185	-	130585216	130589185	A3SS	ENSMUST00000137276.3	novel	0.29	16	39	16	39	y	0.39	21	33	21	33	y	0.39	67	105	67	105	y	0.20	17	70	17	70	y	0.22	32	114	32	114	y	0.40	35	52	35	52	y	0.26	25	72	25	72	y	0.19	19	83	19	83	y	0.11	5	42	5	42	n	0.43	27	36	27	36	y	0.31	16	35	16	35	y	0.31	24	54	24	54	y	ENSMUSG00000026405.15	C4bp	chr1	protein_coding	complement component 4 binding protein
novel_NIR_75	chr1	130598810	130601962	-	130598810	130609886	A5SS	ENSMUST00000189393.2	novel	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	23	0	23	0	y	1.00	1	0	1	0	n	1.00	8	0	8	0	y	1.00	18	0	18	0	y	1.00	8	0	8	0	y	1.00	14	0	14	0	y	1.00	1	0	1	0	n	1.00	7	0	7	0	y	1.00	1	0	1	0	n	1.00	5	0	5	0	y	ENSMUSG00000100257.2	C4bp-ps1	chr1	unprocessed_pseudogene	complement component 4 binding protein, pseudogene 1
novel_NIR_76	chr1	130598810	130601962	-	130598810;130600453	130600321;130601962	ES	ENSMUST00000188520.2	novel	1.00	5	0.0	5	0;0	y	1.00	3	0.0	3	0;0	y	1.00	23	0.0	23	0;0	y	1.00	1	0.0	1	0;0	n	1.00	8	0.0	8	0;0	y	1.00	18	0.0	18	0;0	y	1.00	8	0.0	8	0;0	y	1.00	14	0.0	14	0;0	y	1.00	1	0.0	1	0;0	n	1.00	7	0.0	7	0;0	y	1.00	1	0.0	1	0;0	n	1.00	5	0.0	5	0;0	y	ENSMUSG00000101904.2	Gm29427	chr1	protein_coding	predicted gene 29427
novel_NIR_77	chr1	130598810	130605420	-	130598810	130609886	A5SS	ENSMUST00000189393.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000100257.2	C4bp-ps1	chr1	unprocessed_pseudogene	complement component 4 binding protein, pseudogene 1
novel_NIR_78	chr1	130598810	130605576	-	130598810	130609886	A5SS	ENSMUST00000189393.2	novel	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000100257.2	C4bp-ps1	chr1	unprocessed_pseudogene	complement component 4 binding protein, pseudogene 1
novel_NIR_79	chr1	130602045	130605576	-	130602045;130605457	130605420;130605576	ES	ENSMUST00000188520.2	novel	0.00	0	6.5	0	8;5	n	0.00	0	2.5	0	2;3	n	0.22	3	10.5	3	16;5	y	-	-	-	-	-	-	0.00	0	4.0	0	6;2	n	0.50	6	6.0	6	8;4	y	0.00	0	2.0	0	1;3	n	0.00	0	6.5	0	6;7	n	0.00	0	1.5	0	3;0	n	0.00	0	1.5	0	1;2	n	0.00	0	1.0	0	2;0	n	0.00	0	1.0	0	2;0	n	ENSMUSG00000101904.2	Gm29427	chr1	protein_coding	predicted gene 29427
novel_NIR_80	chr1	130605476	130605576	-	130605457	130605576	A3SS	ENSMUST00000188520.2	novel	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.71	12	5	12	5	y	-	-	-	-	-	-	0.71	5	2	5	2	y	0.20	1	4	1	4	n	0.40	2	3	2	3	y	0.46	6	7	6	7	y	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000101904.2	Gm29427	chr1	protein_coding	predicted gene 29427
novel_NIR_81	chr1	130605647	130606266	-	130605647	130626416	A5SS	ENSMUST00000188520.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000101904.2	Gm29427	chr1	protein_coding	predicted gene 29427
novel_NIR_82	chr1	130605647	130607663	-	130605647	130626416	A5SS	ENSMUST00000188520.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	18	0	18	0	y	0.33	1	2	1	2	n	1.00	5	0	5	0	y	0.50	1	1	1	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000101904.2	Gm29427	chr1	protein_coding	predicted gene 29427
novel_NIR_83	chr1	130610715	130611637	-	130610715	130611639	A5SS	ENSMUST00000189393.2	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000100257.2	C4bp-ps1	chr1	unprocessed_pseudogene	complement component 4 binding protein, pseudogene 1
novel_NIR_84	chr1	130624528	130624754	-	130618885	130624754	A3SS	ENSMUST00000066863.13	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.20	2	8	2	8	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000026409.15	Pfkfb2	chr1	protein_coding	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
novel_NIR_85	chr1	130630175	130633152	-	130630175	130634163	A5SS	ENSMUST00000191301.2	novel	0.40	2	3	2	3	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000026409.15	Pfkfb2	chr1	protein_coding	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
novel_NIR_86	chr1	130635938	130643458	-	130635938	130642193	5pMXE	ENSMUST00000186867.7	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.44	4	5	4	5	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000026409.15	Pfkfb2	chr1	protein_coding	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
novel_NIR_87	chr1	130642313	130642410	-	130642313	130643458	A5SS	ENSMUST00000188520.2	novel	0.03	1	28	1	28	n	0.00	0	17	0	17	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.03	1	31	1	31	n	0.00	0	29	0	29	n	0.10	2	18	2	18	n	0.40	6	9	6	9	y	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	ENSMUSG00000101904.2	Gm29427	chr1	protein_coding	predicted gene 29427
novel_NIR_88	chr1	130642313	130642410	-	130642313	130644481	A5SS	ENSMUST00000186777.2	novel	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.12	1	7	1	7	n	0.00	0	3	0	3	n	0.33	2	4	2	4	y	1.00	6	0	6	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000026409.15	Pfkfb2	chr1	protein_coding	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
novel_NIR_89	chr1	130642313	130642410	-	130642313	130646559	A5SS	ENSMUST00000189534.7	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.75	6	2	6	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026409.15	Pfkfb2	chr1	protein_coding	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
novel_NIR_90	chr1	130642313	130643114	-	130642313	130643458	A5SS	ENSMUST00000188520.2	novel	0.07	2	28	2	28	n	0.06	1	17	1	17	n	0.00	0	12	0	12	n	0.07	1	14	1	14	n	0.00	0	31	0	31	n	0.17	6	29	6	29	y	0.00	0	18	0	18	n	0.10	1	9	1	9	n	0.25	2	6	2	6	y	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	ENSMUSG00000101904.2	Gm29427	chr1	protein_coding	predicted gene 29427
novel_NIR_91	chr1	130642313	130643114	-	130642313	130644481	A5SS	ENSMUST00000186777.2	novel	0.40	2	3	2	3	y	1.00	1	0	1	0	n	0.00	0	4	0	4	n	0.50	1	1	1	1	n	0.00	0	7	0	7	n	0.67	6	3	6	3	y	0.00	0	4	0	4	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000026409.15	Pfkfb2	chr1	protein_coding	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
novel_NIR_92	chr1	130642313	130643114	-	130642313	130646559	A5SS	ENSMUST00000189534.7	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.86	6	1	6	1	y	0.00	0	1	0	1	n	0.33	1	2	1	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026409.15	Pfkfb2	chr1	protein_coding	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
novel_NIR_93	chr1	130642313	130643619	-	130642313	130643458	5pMXE	ENSMUST00000188520.2	novel	0.00	0	28	0	28	n	0.19	4	17	4	17	y	0.25	4	12	4	12	y	0.00	0	14	0	14	n	0.21	8	31	8	31	y	0.06	2	29	2	29	n	0.00	0	18	0	18	n	0.25	3	9	3	9	y	0.14	1	6	1	6	n	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.07	1	13	1	13	n	ENSMUSG00000101904.2	Gm29427	chr1	protein_coding	predicted gene 29427
novel_NIR_94	chr1	130642313	130643619	-	130642313	130644481	A5SS	ENSMUST00000186777.2	novel	0.00	0	3	0	3	n	1.00	4	0	4	0	y	0.50	4	4	4	4	y	0.00	0	1	0	1	n	0.53	8	7	8	7	y	0.40	2	3	2	3	y	0.00	0	4	0	4	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000026409.15	Pfkfb2	chr1	protein_coding	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
novel_NIR_95	chr1	130642313	130643619	-	130642313	130646559	A5SS	ENSMUST00000189534.7	novel	-	-	-	-	-	-	1.00	4	0	4	0	y	0.57	4	3	4	3	y	-	-	-	-	-	-	1.00	8	0	8	0	y	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.60	3	2	3	2	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000026409.15	Pfkfb2	chr1	protein_coding	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
novel_NIR_96	chr1	130642313	130644272	-	130642313	130643458	5pMXE	ENSMUST00000188520.2	novel	0.00	0	28	0	28	n	0.00	0	17	0	17	n	0.25	4	12	4	12	y	0.00	0	14	0	14	n	0.11	4	31	4	31	n	0.00	0	29	0	29	n	0.00	0	18	0	18	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.06	1	15	1	15	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	ENSMUSG00000101904.2	Gm29427	chr1	protein_coding	predicted gene 29427
novel_NIR_97	chr1	130642313	130644272	-	130642313	130644481	A5SS	ENSMUST00000186777.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.50	4	4	4	4	y	0.00	0	1	0	1	n	0.36	4	7	4	7	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000026409.15	Pfkfb2	chr1	protein_coding	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
novel_NIR_98	chr1	130642313	130644272	-	130642313	130646559	A5SS	ENSMUST00000189534.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.57	4	3	4	3	y	-	-	-	-	-	-	1.00	4	0	4	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026409.15	Pfkfb2	chr1	protein_coding	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
novel_NIR_99	chr1	130642313	130645380	-	130642313	130643458	5pMXE	ENSMUST00000188520.2	novel	0.03	1	28	1	28	n	0.00	0	17	0	17	n	0.08	1	12	1	12	n	0.00	0	14	0	14	n	0.00	0	31	0	31	n	0.06	2	29	2	29	n	0.10	2	18	2	18	n	0.18	2	9	2	9	y	0.25	2	6	2	6	y	0.00	0	15	0	15	n	0.17	1	5	1	5	n	0.00	0	13	0	13	n	ENSMUSG00000101904.2	Gm29427	chr1	protein_coding	predicted gene 29427
novel_NIR_100	chr1	130642313	130645380	-	130642313	130644481	5pMXE	ENSMUST00000186777.2	novel	0.25	1	3	1	3	n	-	-	-	-	-	-	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.40	2	3	2	3	y	0.33	2	4	2	4	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	ENSMUSG00000026409.15	Pfkfb2	chr1	protein_coding	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
novel_NIR_101	chr1	130642313	130645380	-	130642313	130646559	A5SS	ENSMUST00000189534.7	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.67	2	1	2	1	y	0.50	2	2	2	2	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000026409.15	Pfkfb2	chr1	protein_coding	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
novel_NIR_102	chr1	130642313	130646188	-	130642313	130644481	5pMXE	ENSMUST00000186777.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.33	2	4	2	4	y	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000026409.15	Pfkfb2	chr1	protein_coding	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
novel_NIR_103	chr1	130642313	130656938	-	130642313	130643458	5pMXE	ENSMUST00000188520.2	novel	0.00	0	28	0	28	n	0.00	0	17	0	17	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	31	0	31	n	0.09	3	29	3	29	n	0.00	0	18	0	18	n	0.18	2	9	2	9	y	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	ENSMUSG00000101904.2	Gm29427	chr1	protein_coding	predicted gene 29427
novel_NIR_104	chr1	130642313	130656938	-	130642313	130644481	5pMXE	ENSMUST00000186777.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.50	3	3	3	3	y	0.00	0	4	0	4	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000026409.15	Pfkfb2	chr1	protein_coding	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
novel_NIR_105	chr1	130642313	130656938	-	130642313;130646712	130646559;130656938	ES	ENSMUST00000189534.7	novel	0.00	0	2.0	0	0;4	n	0.00	0	1.0	0	0;2	n	0.00	0	11.5	0	3;20	n	0.00	0	1.5	0	0;3	n	0.00	0	3.0	0	0;6	n	0.46	3	3.5	3	1;6	y	0.00	0	3.0	0	1;5	n	0.31	2	4.5	2	2;7	y	0.00	0	1.0	0	0;2	n	-	-	-	-	-	-	0.00	0	1.5	0	0;3	n	-	-	-	-	-	-	ENSMUSG00000026409.15	Pfkfb2	chr1	protein_coding	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
novel_NIR_106	chr1	130642313;130646281	130646188;130646559	-	130642313	130646559	cassetteExon	ENSMUST00000189534.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2.0	3	2;2	3	y	-	-	-	-	-	-	1.00	0.5	0	0;1	0	n	0.00	0.0	1	0;0	1	n	0.00	0.0	1	0;0	1	n	0.00	0.0	2	0;0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026409.15	Pfkfb2	chr1	protein_coding	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
novel_NIR_107	chr1	130667975	130672922	-	130667975	130668717	5pMXE	ENSMUST00000188068.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000099556.2	Gm28857	chr1	lncRNA	predicted gene 28857
novel_NIR_108	chr1	130667975	130691163	-	130667975	130668717	5pMXE	ENSMUST00000188068.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	7	0	7	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000099556.2	Gm28857	chr1	lncRNA	predicted gene 28857
novel_NIR_109	chr1	130667975	130691249	-	130667975	130668717	5pMXE	ENSMUST00000188068.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	12	0	12	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	14	0	14	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000099556.2	Gm28857	chr1	lncRNA	predicted gene 28857
novel_NIR_110	chr1	130756577	130762110	+	130754718	130762110	A5SS	ENSMUST00000133792.8	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.00	0	5	0	5	n	ENSMUSG00000026417.14	Pigr	chr1	protein_coding	polymeric immunoglobulin receptor
novel_NIR_111	chr1	130756577	130762110	+	130756828	130762110	5pMXE	ENSMUST00000137782.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	ENSMUSG00000026417.14	Pigr	chr1	protein_coding	polymeric immunoglobulin receptor
novel_NIR_112	chr1	130986499	130990245	-	130986499	131000077	A5SS	ENSMUST00000188459.4	novel	1.00	10	0	10	0	n	0.50	1	1	1	1	n	0.55	11	9	11	9	n	0.64	7	4	7	4	n	0.71	12	5	12	5	n	0.29	2	5	2	5	n	0.33	3	6	3	6	y	0.60	3	2	3	2	n	0.00	0	5	0	5	n	0.44	4	5	4	5	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000016528.11	Mapkapk2	chr1	protein_coding	MAP kinase-activated protein kinase 2
novel_NIR_113	chr1	130986499	130994741	-	130986499	131000077	A5SS	ENSMUST00000188459.4	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.33	2	4	2	4	y	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.50	2	2	2	2	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	ENSMUSG00000016528.11	Mapkapk2	chr1	protein_coding	MAP kinase-activated protein kinase 2
novel_NIR_114	chr1	130986499	130996745	-	130986499	131000077	A5SS	ENSMUST00000188459.4	novel	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000016528.11	Mapkapk2	chr1	protein_coding	MAP kinase-activated protein kinase 2
novel_NIR_115	chr1	130986499	131019136	-	130986499	131000077	5pMXE	ENSMUST00000188459.4	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.36	5	9	5	9	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000016528.11	Mapkapk2	chr1	protein_coding	MAP kinase-activated protein kinase 2
novel_NIR_116	chr1	130986499	131021556	-	130986499	131000077	5pMXE	ENSMUST00000188459.4	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.14	1	6	1	6	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	ENSMUSG00000016528.11	Mapkapk2	chr1	protein_coding	MAP kinase-activated protein kinase 2
novel_NIR_117	chr1	130986499;130990278	130990245;131000077	-	130986499	131000077	cassetteExon	ENSMUST00000188459.4	novel	1.00	8.5	0	10;7	0	y	0.60	1.5	1	1;2	1	n	0.53	10.0	9	11;9	9	y	0.50	4.0	4	7;1	4	n	0.66	9.5	5	12;7	5	y	0.33	2.5	5	2;3	5	y	0.20	1.5	6	3;0	6	n	0.64	3.5	2	3;4	2	y	0.00	0.0	5	0;0	5	n	0.33	2.5	5	4;1	5	n	0.00	0.0	1	0;0	1	n	0.00	0.0	3	0;0	3	n	ENSMUSG00000016528.11	Mapkapk2	chr1	protein_coding	MAP kinase-activated protein kinase 2
novel_NIR_118	chr1	131060619	131063997	-	131057982	131063997	A3SS	ENSMUST00000016670.9	novel	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	ENSMUSG00000016526.9	Dyrk3	chr1	protein_coding	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3
novel_NIR_119	chr1	131086036	131088137	+	131086036	131088200	A3SS	ENSMUST00000149119.8	novel	0.50	3	3	3	3	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.25	1	3	1	3	n	-	-	-	-	-	-	ENSMUSG00000026427.17	Eif2d	chr1	protein_coding	eukaryotic translation initiation factor 2D
novel_NIR_120	chr1	131098848	131106370	+	131098848	131099658	3pMXE	ENSMUST00000112446.9	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026427.17	Eif2d	chr1	protein_coding	eukaryotic translation initiation factor 2D
novel_NIR_121	chr1	131098848	131106370	+	131098848	131110505	A3SS	ENSMUST00000131855.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026427.17	Eif2d	chr1	protein_coding	eukaryotic translation initiation factor 2D
novel_NIR_122	chr1	131193687	131194230	-	131193687	131197538	A5SS	ENSMUST00000062108.10	novel	0.13	6	39	6	39	n	0.31	8	18	8	18	y	0.01	2	146	2	146	n	0.28	11	29	11	29	y	0.04	3	69	3	69	n	0.05	5	92	5	92	n	0.03	2	57	2	57	n	0.05	5	101	5	101	n	0.13	5	34	5	34	n	0.02	1	40	1	40	n	0.03	1	32	1	32	n	0.00	0	45	0	45	n	ENSMUSG00000042349.14	Ikbke	chr1	protein_coding	inhibitor of kappaB kinase epsilon
novel_NIR_123	chr1	131204315	131204562	-	131204315	131204631	A5SS	ENSMUST00000161764.8	novel	0.21	3	11	3	11	y	0.00	0	5	0	5	n	0.00	0	19	0	19	n	0.00	0	6	0	6	n	0.00	0	19	0	19	n	0.07	2	28	2	28	n	0.00	0	13	0	13	n	0.05	1	19	1	19	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	ENSMUSG00000042349.14	Ikbke	chr1	protein_coding	inhibitor of kappaB kinase epsilon
novel_NIR_124	chr1	131204315	131204562	-	131204315	131206436	A5SS	ENSMUST00000062108.10	novel	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.00	0	6	0	6	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000042349.14	Ikbke	chr1	protein_coding	inhibitor of kappaB kinase epsilon
novel_NIR_125	chr1	131453331	131454081	-	131453331	131454971	A5SS	ENSMUST00000097588.9	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.33	2	4	2	4	y	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.33	3	6	3	6	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000026425.16	Srgap2	chr1	protein_coding	SLIT-ROBO Rho GTPase activating protein 2
novel_NIR_126	chr1	131453331	131454569	-	131453331	131454971	A5SS	ENSMUST00000097588.9	novel	0.00	0	3	0	3	n	0.67	2	1	2	1	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000026425.16	Srgap2	chr1	protein_coding	SLIT-ROBO Rho GTPase activating protein 2
novel_NIR_127	chr1	131453331	131455846	-	131453331	131454971	5pMXE	ENSMUST00000097588.9	novel	0.00	0	3	0	3	n	0.67	2	1	2	1	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000026425.16	Srgap2	chr1	protein_coding	SLIT-ROBO Rho GTPase activating protein 2
novel_NIR_128	chr1	131743773	131748440	+	131743849	131748440	A5SS	ENSMUST00000048660.12	novel	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.17	1	5	1	5	n	ENSMUSG00000042251.13	Pm20d1	chr1	protein_coding	peptidase M20 domain containing 1
novel_NIR_129	chr1	131743849	131745305	+	131743849	131743993	3pMXE	ENSMUST00000152989.2	novel	0.25	1	3	1	3	n	0.09	1	10	1	10	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.15	2	11	2	11	y	0.33	4	8	4	8	y	ENSMUSG00000042251.13	Pm20d1	chr1	protein_coding	peptidase M20 domain containing 1
novel_NIR_130	chr1	131743849	131745305	+	131743849	131748440	A3SS	ENSMUST00000048660.12	novel	0.20	1	4	1	4	n	0.10	1	9	1	9	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	10	0	10	n	0.25	2	6	2	6	y	0.44	4	5	4	5	y	ENSMUSG00000042251.13	Pm20d1	chr1	protein_coding	peptidase M20 domain containing 1
novel_NIR_131	chr1	131743865	131743993	+	131743849	131743993	A5SS	ENSMUST00000152989.2	novel	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.38	5	8	5	8	y	ENSMUSG00000042251.13	Pm20d1	chr1	protein_coding	peptidase M20 domain containing 1
novel_NIR_132	chr1	131855954	131857305	+	131855954	131857354	A3SS	ENSMUST00000189946.7	novel	0.05	1	21	1	21	n	0.00	0	24	0	24	n	0.00	0	34	0	34	n	0.00	0	21	0	21	n	0.04	2	45	2	45	n	0.00	0	26	0	26	n	0.00	0	39	0	39	n	0.00	0	17	0	17	n	0.19	3	13	3	13	y	0.03	1	29	1	29	n	0.00	0	17	0	17	n	0.00	0	24	0	24	n	ENSMUSG00000026434.13	Nucks1	chr1	protein_coding	nuclear casein kinase and cyclin-dependent kinase substrate 1
novel_NIR_133	chr1	131897691	131904456	+	131890790	131904456	A5SS	ENSMUST00000191034.2	novel	0.12	1	7	1	7	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.33	2	4	2	4	y	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	ENSMUSG00000100037.2	Gm29103	chr1	lncRNA	predicted gene 29103
novel_NIR_134	chr1	131898788	131904456	+	131890790	131904456	A5SS	ENSMUST00000191034.2	novel	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.50	3	3	3	3	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	ENSMUSG00000100037.2	Gm29103	chr1	lncRNA	predicted gene 29103
novel_NIR_135	chr1	131936157	131940764	+	131935678	131940764	A5SS	ENSMUST00000027696.10	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.40	2	3	2	3	y	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000026436.16	Elk4	chr1	protein_coding	ELK4, member of ETS oncogene family
novel_NIR_136	chr1	131936157	131940764	+	131935925	131940764	A5SS	ENSMUST00000124579.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000026436.16	Elk4	chr1	protein_coding	ELK4, member of ETS oncogene family
novel_NIR_137	chr1	131951576	131954580	+	131951576	131959302	A3SS	ENSMUST00000147218.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.67	4	2	4	2	y	-	-	-	-	-	-	ENSMUSG00000026436.16	Elk4	chr1	protein_coding	ELK4, member of ETS oncogene family
novel_NIR_138	chr1	131987008	131995401	-	131985705	131995401	A3SS	ENSMUST00000146267.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000059149.18	Mfsd4a	chr1	protein_coding	major facilitator superfamily domain containing 4A
novel_NIR_139	chr1	131987008	131995401	-	131987096	131995401	A3SS	ENSMUST00000126927.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	2	4	2	4	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000059149.18	Mfsd4a	chr1	protein_coding	major facilitator superfamily domain containing 4A
novel_NIR_140	chr1	132380732	132380825	+	132377713	132380825	A5SS	ENSMUST00000045110.14	novel	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.08	1	11	1	11	n	0.00	0	11	0	11	n	0.20	2	8	2	8	y	0.05	1	19	1	19	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.10	1	9	1	9	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	ENSMUSG00000042046.16	Dstyk	chr1	protein_coding	dual serine/threonine and tyrosine protein kinase
novel_NIR_141	chr1	132424013	132424596	+	132424013	132424537	A3SS	ENSMUST00000190825.7	novel	0.00	0	26	0	26	n	0.11	3	24	3	24	n	0.00	0	36	0	36	n	0.10	2	19	2	19	n	0.11	4	33	4	33	n	0.00	0	17	0	17	n	0.00	0	28	0	28	n	0.20	4	16	4	16	y	0.00	0	28	0	28	n	0.05	2	35	2	35	n	0.00	0	29	0	29	n	0.00	0	37	0	37	n	ENSMUSG00000026439.15	Rbbp5	chr1	protein_coding	retinoblastoma binding protein 5, histone lysine methyltransferase complex subunit
novel_NIR_142	chr1	132570596	132574987	-	132570596	132593217	A5SS	ENSMUST00000094569.11	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	6	0	6	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000026442.15	Nfasc	chr1	protein_coding	neurofascin
novel_NIR_143	chr1	132570596	132574987	-	132570596	132669409	A5SS	ENSMUST00000188307.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	6	0	6	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000026442.15	Nfasc	chr1	protein_coding	neurofascin
novel_NIR_144	chr1	132922321;132924573	132924492;132929021	-	132922321;132924447	132924301;132929021	MXE	ENSMUST00000186617.7	novel	0.14	2.5	15.0	0;5	19;11	n	0.07	1.5	20.5	0;3	20;21	n	0.07	3.0	40.5	2;4	41;40	n	0.01	0.5	35.0	1;0	27;43	n	0.22	11.0	38.5	12;10	34;43	y	0.00	0.0	20.5	0;0	18;23	n	0.03	1.0	33.0	0;2	35;31	n	0.07	2.0	28.0	0;4	22;34	n	0.00	0.0	26.5	0;0	24;29	n	0.01	0.5	35.0	0;1	37;33	n	0.05	1.0	17.5	2;0	18;17	n	0.06	2.5	37.0	5;0	37;37	n	ENSMUSG00000054387.14	Mdm4	chr1	protein_coding	transformed mouse 3T3 cell double minute 4
novel_NIR_145	chr1	132924573	132929021	-	132924447	132929021	A3SS	ENSMUST00000186617.7	novel	0.31	5	11	5	11	y	0.12	3	21	3	21	n	0.09	4	40	4	40	n	0.00	0	43	0	43	n	0.19	10	43	10	43	n	0.00	0	23	0	23	n	0.06	2	31	2	31	n	0.11	4	34	4	34	n	0.00	0	29	0	29	n	0.03	1	33	1	33	n	0.00	0	17	0	17	n	0.00	0	37	0	37	n	ENSMUSG00000054387.14	Mdm4	chr1	protein_coding	transformed mouse 3T3 cell double minute 4
novel_NIR_146	chr1	132924573	132929021	-	132924447	132929021	A3SS	ENSMUST00000189596.2	novel	0.31	5	11	5	11	n	0.12	3	21	3	21	n	0.09	4	40	4	40	n	0.00	0	43	0	43	n	0.19	10	43	10	43	y	0.00	0	23	0	23	n	0.06	2	31	2	31	n	0.11	4	34	4	34	n	0.00	0	29	0	29	n	0.03	1	33	1	33	n	0.00	0	17	0	17	n	0.00	0	37	0	37	n	ENSMUSG00000054387.14	Mdm4	chr1	protein_coding	transformed mouse 3T3 cell double minute 4
novel_NIR_147	chr1	132931628	132931705	-	132931628	132932392	A5SS	ENSMUST00000186617.7	novel	0.00	0	7	0	7	n	0.29	2	5	2	5	y	0.30	3	7	3	7	y	0.00	0	2	0	2	n	0.05	1	18	1	18	n	0.10	1	9	1	9	n	0.07	1	14	1	14	n	0.11	2	17	2	17	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	ENSMUSG00000054387.14	Mdm4	chr1	protein_coding	transformed mouse 3T3 cell double minute 4
novel_NIR_148	chr1	132931628	132931705	-	132931628	132936875	A5SS	ENSMUST00000191212.7	novel	0.00	0	5	0	5	n	0.50	2	2	2	2	y	0.60	3	2	3	2	y	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.50	1	1	1	1	n	0.20	1	4	1	4	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000054387.14	Mdm4	chr1	protein_coding	transformed mouse 3T3 cell double minute 4
novel_NIR_149	chr1	132931628	132936721	-	132931628	132932392	A5SS&ES	ENSMUST00000186617.7	novel	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.12	1	7	1	7	n	0.50	2	2	2	2	y	0.00	0	18	0	18	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.20	2	8	2	8	y	ENSMUSG00000054387.14	Mdm4	chr1	protein_coding	transformed mouse 3T3 cell double minute 4
novel_NIR_150	chr1	132931628	132936721	-	132931628	132936875	A5SS	ENSMUST00000191212.7	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.50	2	2	2	2	y	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	ENSMUSG00000054387.14	Mdm4	chr1	protein_coding	transformed mouse 3T3 cell double minute 4
novel_NIR_151	chr1	13294937	13327107	-	13294937	13356193	A5SS	ENSMUST00000081713.11	novel	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.13	2	13	2	13	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.11	1	8	1	8	n	0.27	3	8	3	8	y	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.14	1	6	1	6	n	0.08	1	12	1	12	n	ENSMUSG00000005886.15	Ncoa2	chr1	protein_coding	nuclear receptor coactivator 2
novel_NIR_152	chr1	13294937	13327107	-	13294937	13369887	A5SS	ENSMUST00000145280.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000005886.15	Ncoa2	chr1	protein_coding	nuclear receptor coactivator 2
novel_NIR_153	chr1	13294937	13444162	-	13294937	13369887	5pMXE	ENSMUST00000145280.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000005886.15	Ncoa2	chr1	protein_coding	nuclear receptor coactivator 2
novel_NIR_154	chr1	13294937	13444162	-	13294937;13356249	13356193;13444162	ES	ENSMUST00000068304.13	novel	0.20	2	8.0	2	8;8	y	0.00	0	7.5	0	7;8	n	0.00	0	11.0	0	13;9	n	0.00	0	10.5	0	11;10	n	0.00	0	13.5	0	14;13	n	0.00	0	8.0	0	9;7	n	0.14	1	6.0	1	8;4	n	0.00	0	8.0	0	8;8	n	0.00	0	5.5	0	4;7	n	0.00	0	10.0	0	11;9	n	0.00	0	5.0	0	6;4	n	0.10	1	9.5	1	12;7	n	ENSMUSG00000005886.15	Ncoa2	chr1	protein_coding	nuclear receptor coactivator 2
novel_NIR_155	chr1	133027452	133028543	+	133027452	133028463	A3SS	ENSMUST00000077730.7	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.80	4	1	4	1	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	ENSMUSG00000026447.18	Pik3c2b	chr1	protein_coding	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta
novel_NIR_156	chr1	133031353	133031539	+	133031172	133031539	A5SS	ENSMUST00000077730.7	novel	1.00	3	0	3	0	y	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.33	1	2	1	2	n	0.43	3	4	3	4	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.60	3	2	3	2	y	1.00	3	0	3	0	y	ENSMUSG00000026447.18	Pik3c2b	chr1	protein_coding	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta
novel_NIR_157	chr1	133062245	133064401	+	133059648	133064401	A5SS	ENSMUST00000122956.2	novel	0.00	0	9	0	9	n	0.06	1	17	1	17	n	0.00	0	19	0	19	n	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	25	0	25	n	0.00	0	18	0	18	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.29	2	5	2	5	y	0.00	0	11	0	11	n	ENSMUSG00000046062.6	Ppp1r15b	chr1	protein_coding	protein phosphatase 1, regulatory subunit 15B
novel_NIR_158	chr1	133169163	133186747	+	133101544	133186747	A5SS	ENSMUST00000212252.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041757.18	Plekha6	chr1	protein_coding	pleckstrin homology domain containing, family A member 6
novel_NIR_159	chr1	133169163	133186747	+	133109338	133186747	A5SS	ENSMUST00000187285.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041757.18	Plekha6	chr1	protein_coding	pleckstrin homology domain containing, family A member 6
novel_NIR_160	chr1	133169163	133186747	+	133173880	133186747	5pMXE	ENSMUST00000105082.9	novel	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	24	0	24	n	0.00	0	1	0	1	n	0.27	3	8	3	8	y	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.23	5	17	5	17	y	0.00	0	9	0	9	n	0.00	0	24	0	24	n	ENSMUSG00000041757.18	Plekha6	chr1	protein_coding	pleckstrin homology domain containing, family A member 6
novel_NIR_161	chr1	133169163	133186747	+	133184776	133186747	5pMXE	ENSMUST00000239123.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000041757.18	Plekha6	chr1	protein_coding	pleckstrin homology domain containing, family A member 6
novel_NIR_162	chr1	133202112	133202316	+	133202112	133202531	A3SS	ENSMUST00000038295.15	novel	0.07	1	13	1	13	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.07	1	14	1	14	n	0.00	0	9	0	9	n	0.50	2	2	2	2	y	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.27	3	8	3	8	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000041757.18	Plekha6	chr1	protein_coding	pleckstrin homology domain containing, family A member 6
novel_NIR_163	chr1	133202112	133202316	+	133202112	133208077	A3SS	ENSMUST00000187285.7	novel	0.05	1	19	1	19	n	0.12	1	7	1	7	n	0.00	0	11	0	11	n	0.05	1	19	1	19	n	0.00	0	22	0	22	n	0.20	2	8	2	8	y	0.00	0	20	0	20	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.12	3	21	3	21	n	0.00	0	17	0	17	n	0.00	0	16	0	16	n	ENSMUSG00000041757.18	Plekha6	chr1	protein_coding	pleckstrin homology domain containing, family A member 6
novel_NIR_164	chr1	133202112	133202316	+	133202112	133209521	A3SS	ENSMUST00000189598.2	novel	0.33	1	2	1	2	n	0.50	1	1	1	1	n	0.00	0	5	0	5	n	0.11	1	8	1	8	n	0.00	0	13	0	13	n	0.40	2	3	2	3	y	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.21	3	11	3	11	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	ENSMUSG00000041757.18	Plekha6	chr1	protein_coding	pleckstrin homology domain containing, family A member 6
novel_NIR_165	chr1	133203603	133204243	+	133203603	133207111	A3SS	ENSMUST00000038295.15	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041757.18	Plekha6	chr1	protein_coding	pleckstrin homology domain containing, family A member 6
novel_NIR_166	chr1	133203603	133204243	+	133203603	133208077	A3SS	ENSMUST00000187299.2	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	4	2	4	2	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000041757.18	Plekha6	chr1	protein_coding	pleckstrin homology domain containing, family A member 6
novel_NIR_167	chr1	133237649	133239973	+	133237649	133254873	A3SS	ENSMUST00000193888.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000115958.2	Gm28040	chr1	protein_coding	predicted gene, 28040
novel_NIR_168	chr1	133237649	133239973	+	133237649	133254948	A3SS	ENSMUST00000194044.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000115958.2	Gm28040	chr1	protein_coding	predicted gene, 28040
novel_NIR_169	chr1	133237649	133246840	+	133237649	133254873	A3SS	ENSMUST00000193888.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000115958.2	Gm28040	chr1	protein_coding	predicted gene, 28040
novel_NIR_170	chr1	133237649	133246840	+	133237649	133254948	A3SS	ENSMUST00000194044.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000115958.2	Gm28040	chr1	protein_coding	predicted gene, 28040
novel_NIR_171	chr1	133238422	133247019	+	133237703	133247019	A5SS	ENSMUST00000192465.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000103421.2	Golt1a	chr1	protein_coding	golgi transport 1A
novel_NIR_172	chr1	133248792	133249337	+	133248792	133254948	A3SS	ENSMUST00000184603.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000098306.10	Gm28040	chr1	protein_coding	predicted gene, 28040
novel_NIR_173	chr1	133256976	133257094	+	133255078	133257094	A5SS	ENSMUST00000193888.6	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000115958.2	Gm28040	chr1	protein_coding	predicted gene, 28040
novel_NIR_174	chr1	133296290	133296488	+	133295098	133296488	A5SS	ENSMUST00000131450.2	novel	0.00	0	1	0	1	n	0.17	1	5	1	5	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000070644.14	Etnk2	chr1	protein_coding	ethanolamine kinase 2
novel_NIR_175	chr1	133321009	133344660	-	133321009	133351614	A5SS	ENSMUST00000153799.8	novel	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.30	3	7	3	7	y	0.00	0	20	0	20	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	ENSMUSG00000070643.12	Sox13	chr1	protein_coding	SRY (sex determining region Y)-box 13
novel_NIR_176	chr1	133534317	133537929	-	133534317	133537646	5pMXE	ENSMUST00000171264.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000090553.9	Snrpe	chr1	protein_coding	small nuclear ribonucleoprotein E
novel_NIR_177	chr1	13356249	13443815	-	13356249	13369887	A5SS&ES	ENSMUST00000143603.8	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.14	1	6	1	6	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.33	1	2	1	2	n	0.50	2	2	2	2	y	ENSMUSG00000005886.15	Ncoa2	chr1	protein_coding	nuclear receptor coactivator 2
novel_NIR_178	chr1	13356249	13443815	-	13356249	13442407	5pMXE	ENSMUST00000081713.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000005886.15	Ncoa2	chr1	protein_coding	nuclear receptor coactivator 2
novel_NIR_179	chr1	13356249	13443815	-	13356249	13444162	A5SS	ENSMUST00000068304.13	novel	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.20	1	4	1	4	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.10	1	9	1	9	n	0.20	1	4	1	4	n	0.22	2	7	2	7	y	ENSMUSG00000005886.15	Ncoa2	chr1	protein_coding	nuclear receptor coactivator 2
novel_NIR_180	chr1	133565194	133566271	-	133565197	133566271	A3SS	ENSMUST00000191896.6	novel	0.16	18	92	18	92	y	0.12	10	73	10	73	n	0.13	18	120	18	120	n	0.14	15	89	15	89	n	0.07	10	134	10	134	n	0.14	8	49	8	49	n	0.09	12	121	12	121	n	0.10	9	81	9	81	n	0.10	11	96	11	96	n	0.10	14	120	14	120	n	0.09	8	82	8	82	n	0.07	9	113	9	113	n	ENSMUSG00000102976.7	Zc3h11a	chr1	protein_coding	zinc finger CCCH type containing 11A
novel_NIR_181	chr1	133581770	133583072	-	133581770	133583083	A5SS	ENSMUST00000191896.6	novel	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.11	1	8	1	8	n	0.22	2	7	2	7	y	0.50	2	2	2	2	y	0.00	0	6	0	6	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	ENSMUSG00000102976.7	Zc3h11a	chr1	protein_coding	zinc finger CCCH type containing 11A
novel_NIR_182	chr1	133581770	133583072	-	133581770	133588975	A5SS	ENSMUST00000191705.6	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.17	2	10	2	10	y	0.33	1	2	1	2	n	0.33	2	4	2	4	y	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000102976.7	Zc3h11a	chr1	protein_coding	zinc finger CCCH type containing 11A
novel_NIR_183	chr1	133581770	133583072	-	133581770	133588994	A5SS	ENSMUST00000193504.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.33	1	2	1	2	n	0.67	2	1	2	1	y	1.00	2	0	2	0	y	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000102976.7	Zc3h11a	chr1	protein_coding	zinc finger CCCH type containing 11A
novel_NIR_184	chr1	133581770	133588208	-	133581770	133583083	A5SS&ES	ENSMUST00000191896.6	novel	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.29	2	5	2	5	y	ENSMUSG00000102976.7	Zc3h11a	chr1	protein_coding	zinc finger CCCH type containing 11A
novel_NIR_185	chr1	133581770	133588208	-	133581770	133588975	A5SS	ENSMUST00000191705.6	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.33	2	4	2	4	y	ENSMUSG00000102976.7	Zc3h11a	chr1	protein_coding	zinc finger CCCH type containing 11A
novel_NIR_186	chr1	133581770	133588208	-	133581770	133588994	A5SS	ENSMUST00000193504.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000102976.7	Zc3h11a	chr1	protein_coding	zinc finger CCCH type containing 11A
novel_NIR_187	chr1	133583136	133588208	-	133583136	133585127	A5SS&ES	ENSMUST00000195424.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.50	1	1	1	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000102976.7	Zc3h11a	chr1	protein_coding	zinc finger CCCH type containing 11A
novel_NIR_188	chr1	133583136	133588208	-	133583136	133588314	A5SS	ENSMUST00000191932.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000102976.7	Zc3h11a	chr1	protein_coding	zinc finger CCCH type containing 11A
novel_NIR_189	chr1	133583136	133588208	-	133583136	133588975	A5SS	ENSMUST00000191896.6	novel	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.17	3	15	3	15	y	0.14	1	6	1	6	n	0.00	0	17	0	17	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	17	0	17	n	0.00	0	11	0	11	n	0.00	0	18	0	18	n	ENSMUSG00000102976.7	Zc3h11a	chr1	protein_coding	zinc finger CCCH type containing 11A
novel_NIR_190	chr1	133583136	133588208	-	133583136	133588994	A5SS	ENSMUST00000192107.6	novel	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	1.00	3	0	3	0	y	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000102976.7	Zc3h11a	chr1	protein_coding	zinc finger CCCH type containing 11A
novel_NIR_191	chr1	133585462	133588975	-	133575267	133588975	A3SS	ENSMUST00000194668.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000102976.7	Zc3h11a	chr1	protein_coding	zinc finger CCCH type containing 11A
novel_NIR_192	chr1	133585462	133588975	-	133581770	133588975	A3SS	ENSMUST00000191705.6	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000102976.7	Zc3h11a	chr1	protein_coding	zinc finger CCCH type containing 11A
novel_NIR_193	chr1	133585462	133588975	-	133582176	133588975	A3SS	ENSMUST00000195067.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000102976.7	Zc3h11a	chr1	protein_coding	zinc finger CCCH type containing 11A
novel_NIR_194	chr1	13369946	13443815	-	13369946	13444162	A5SS	ENSMUST00000143603.8	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.30	3	7	3	7	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000005886.15	Ncoa2	chr1	protein_coding	nuclear receptor coactivator 2
novel_NIR_195	chr1	133841567	133842205	+	133841567	133842211	A3SS	ENSMUST00000160564.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000090208.2	Gm15851	chr1	lncRNA	predicted gene 15851
novel_NIR_196	chr1	133842786	133849003	-	133842786	133848993	A5SS	ENSMUST00000127583.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041577.6	Prelp	chr1	protein_coding	proline arginine-rich end leucine-rich repeat
novel_NIR_197	chr1	134110124	134110518	+	134110013	134110518	A5SS	ENSMUST00000156873.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000064246.11	Chil1	chr1	protein_coding	chitinase-like 1
novel_NIR_198	chr1	134110547	134110971	+	134110547	134110976	A3SS	ENSMUST00000133701.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	9	0	9	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.83	5	1	5	1	y	1.00	1	0	1	0	n	1.00	12	0	12	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000064246.11	Chil1	chr1	protein_coding	chitinase-like 1
novel_NIR_199	chr1	134110547	134110971	+	134110547	134111222	A3SS	ENSMUST00000132873.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	9	0	9	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	1	0	1	0	n	0.92	12	1	12	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000064246.11	Chil1	chr1	protein_coding	chitinase-like 1
novel_NIR_200	chr1	134162150	134162401	-	134162150	134162966	A5SS	ENSMUST00000086465.6	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.14	1	6	1	6	n	-	-	-	-	-	-	0.40	2	3	2	3	n	0.20	1	4	1	4	n	0.58	7	5	7	5	y	0.57	8	6	8	6	y	0.50	1	1	1	1	n	0.87	13	2	13	2	y	0.50	1	1	1	1	n	0.67	6	3	6	3	n	ENSMUSG00000042429.9	Adora1	chr1	protein_coding	adenosine A1 receptor
novel_NIR_201	chr1	134162150	134162700	-	134162150	134162966	A5SS	ENSMUST00000086465.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.40	4	6	4	6	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000042429.9	Adora1	chr1	protein_coding	adenosine A1 receptor
novel_NIR_202	chr1	134162150	134162877	-	134162150	134162966	A5SS	ENSMUST00000086465.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.25	2	6	2	6	y	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.25	2	6	2	6	y	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	ENSMUSG00000042429.9	Adora1	chr1	protein_coding	adenosine A1 receptor
novel_NIR_203	chr1	134162184	134162700	-	134162184	134162966	A5SS	ENSMUST00000187631.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.12	1	7	1	7	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000042429.9	Adora1	chr1	protein_coding	adenosine A1 receptor
novel_NIR_204	chr1	134280173;134280494	134280432;134280713	-	134280173	134280713	cassetteExon	ENSMUST00000191237.7	novel	0.03	0.5	15	1;0	15	n	0.17	2.5	12	2;3	12	y	0.00	0.0	30	0;0	30	n	0.00	0.0	32	0;0	32	n	0.00	0.0	43	0;0	43	n	0.00	0.0	14	0;0	14	n	0.04	1.0	22	2;0	22	n	0.00	0.0	23	0;0	23	n	0.00	0.0	25	0;0	25	n	0.00	0.0	30	0;0	30	n	0.00	0.0	27	0;0	27	n	0.07	2.0	26	4;0	26	n	ENSMUSG00000042305.13	Tmem183a	chr1	protein_coding	transmembrane protein 183A
novel_NIR_205	chr1	134280872	134282399	-	134280875	134282399	A3SS	ENSMUST00000191237.7	novel	0.12	4	28	4	28	n	0.00	0	15	0	15	n	0.07	2	25	2	25	n	0.14	2	12	2	12	n	0.14	5	30	5	30	n	0.00	0	11	0	11	n	0.19	4	17	4	17	y	0.08	1	11	1	11	n	0.27	8	22	8	22	y	0.10	3	28	3	28	n	0.21	3	11	3	11	y	0.17	8	40	8	40	y	ENSMUSG00000042305.13	Tmem183a	chr1	protein_coding	transmembrane protein 183A
novel_NIR_206	chr1	134334200	134334341	+	134334200	134334784	A3SS	ENSMUST00000172795.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000026456.19	Cyb5r1	chr1	protein_coding	cytochrome b5 reductase 1
novel_NIR_207	chr1	134343323	134343658	+	134343323	134343431	A3SS	ENSMUST00000156433.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000026457.15	Adipor1	chr1	protein_coding	adiponectin receptor 1
novel_NIR_208	chr1	134509731	134512892	+	134488280	134512892	A5SS	ENSMUST00000047714.14	novel	0.38	3	5	3	5	y	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	ENSMUSG00000042207.18	Kdm5b	chr1	protein_coding	lysine (K)-specific demethylase 5B
novel_NIR_209	chr1	134765779	134770095	-	134765779	134770381	A5SS	ENSMUST00000045665.13	novel	0.67	2	1	2	1	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	14	0	14	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	ENSMUSG00000073557.13	Ppp1r12b	chr1	protein_coding	protein phosphatase 1, regulatory subunit 12B
novel_NIR_210	chr1	135079248	135080209	+	135075465	135080209	A5SS	ENSMUST00000125774.2	novel	1.00	1	0	1	0	n	0.33	1	2	1	2	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	ENSMUSG00000026426.11	Arl8a	chr1	protein_coding	ADP-ribosylation factor-like 8A
novel_NIR_211	chr1	135237608	135241321	-	135237608	135238612	5pMXE	ENSMUST00000125454.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000062580.10	Timm17a	chr1	protein_coding	translocase of inner mitochondrial membrane 17a
novel_NIR_212	chr1	135237608	135241321	-	135237608	135241293	A5SS	ENSMUST00000134088.3	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	2	0	2	0	y	ENSMUSG00000062580.10	Timm17a	chr1	protein_coding	translocase of inner mitochondrial membrane 17a
novel_NIR_213	chr1	135348091	135354662	-	135348091	135353662	A5SS&ES	ENSMUST00000159173.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041879.14	Ipo9	chr1	protein_coding	importin 9
novel_NIR_214	chr1	135348091	135354662	-	135348091	135354669	A5SS	ENSMUST00000161189.8	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000041879.14	Ipo9	chr1	protein_coding	importin 9
novel_NIR_215	chr1	135348091	135354662	-	135348091	135358006	A5SS	ENSMUST00000041023.14	novel	0.00	0	13	0	13	n	0.00	0	1	0	1	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.22	2	7	2	7	y	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	ENSMUSG00000041879.14	Ipo9	chr1	protein_coding	importin 9
novel_NIR_216	chr1	135746754	135753363	+	135746754	135753493	A3SS	ENSMUST00000038760.10	novel	0.00	0	1	0	1	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	16	0	16	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.33	2	4	2	4	y	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	ENSMUSG00000041782.15	Lad1	chr1	protein_coding	ladinin
novel_NIR_217	chr1	136032361	136033186	+	136029300	136033186	A5SS	ENSMUST00000112068.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026407.18	Cacna1s	chr1	protein_coding	calcium channel, voltage-dependent, L type, alpha 1S subunit
novel_NIR_218	chr1	136092869	136096925	+	136092869;136094938	136094900;136096925	ES	ENSMUST00000075164.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	0.83	5	1.0	5	1;1	y	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	0.00	0	0.5	0	1;0	n	ENSMUSG00000041642.19	Kif21b	chr1	protein_coding	kinesin family member 21B
novel_NIR_219	chr1	136252734	136271510	-	136252734	136273037	A5SS	ENSMUST00000048309.12	novel	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.15	2	11	2	11	y	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000041570.15	Camsap2	chr1	protein_coding	calmodulin regulated spectrin-associated protein family, member 2
novel_NIR_220	chr1	136361603	136367491	+	136361603;136362372	136362244;136367491	ES	ENSMUST00000027655.8	novel	0.00	0	9.5	0	8;11	n	0.00	0	11.5	0	11;12	n	0.18	2	9.0	2	6;12	y	0.06	1	15.5	1	16;15	n	0.00	0	9.0	0	10;8	n	0.00	0	8.0	0	10;6	n	0.00	0	17.0	0	18;16	n	0.00	0	4.5	0	5;4	n	0.00	0	2.5	0	0;5	n	0.07	1	13.5	1	20;7	n	0.00	0	9.0	0	4;14	n	0.00	0	5.5	0	9;2	n	ENSMUSG00000026404.13	Ddx59	chr1	protein_coding	DEAD box helicase 59
novel_NIR_221	chr1	136362359	136367491	+	136362372	136367491	A5SS	ENSMUST00000027655.8	novel	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.06	1	16	1	16	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.30	3	7	3	7	y	0.00	0	14	0	14	n	0.33	1	2	1	2	n	ENSMUSG00000026404.13	Ddx59	chr1	protein_coding	DEAD box helicase 59
novel_NIR_222	chr1	13650032	13651247	-	13649790	13651247	A3SS	ENSMUST00000188377.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	20	0	20	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.92	11	1	11	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025935.11	Tram1	chr1	protein_coding	translocating chain-associating membrane protein 1
novel_NIR_223	chr1	136597452	136600866	+	136598670	136600866	5pMXE	ENSMUST00000180495.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.60	3	2	3	2	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000097113.8	Gm19705	chr1	lncRNA	predicted gene, 19705
novel_NIR_224	chr1	136603021	136603986	+	136603021	136609207	A3SS	ENSMUST00000180495.8	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000097113.8	Gm19705	chr1	lncRNA	predicted gene, 19705
novel_NIR_225	chr1	136604999	136609207	+	136603021	136609207	A5SS	ENSMUST00000180495.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000097113.8	Gm19705	chr1	lncRNA	predicted gene, 19705
novel_NIR_226	chr1	136604999	136609207	+	136605004	136609207	A5SS	ENSMUST00000181491.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.70	7	3	7	3	y	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000097113.8	Gm19705	chr1	lncRNA	predicted gene, 19705
novel_NIR_227	chr1	136609300	136611077	+	136609300	136610240	3pMXE	ENSMUST00000181491.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000097113.8	Gm19705	chr1	lncRNA	predicted gene, 19705
novel_NIR_228	chr1	136609300	136611077	+	136609300	136616482	A3SS	ENSMUST00000180495.8	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.75	3	1	3	1	y	ENSMUSG00000097113.8	Gm19705	chr1	lncRNA	predicted gene, 19705
novel_NIR_229	chr1	136616548;136617934	136617885;136618275	+	136616548	136618275	cassetteExon	ENSMUST00000181524.8	novel	0.38	3.0	5	2;4	5	y	0.33	2.0	4	0;4	4	n	0.71	20.0	8	20;20	8	y	0.47	3.5	4	3;4	4	y	0.43	9.0	12	11;7	12	y	0.65	11.0	6	12;10	6	y	0.44	8.0	10	9;7	10	y	0.07	0.5	7	1;0	7	n	1.00	1.0	0	0;2	0	n	0.57	4.0	3	5;3	3	y	0.56	2.5	2	3;2	2	y	0.88	7.5	1	9;6	1	y	ENSMUSG00000097113.8	Gm19705	chr1	lncRNA	predicted gene, 19705
novel_NIR_230	chr1	136617934	136618275	+	136616548	136618275	A5SS	ENSMUST00000181524.8	novel	0.44	4	5	4	5	n	0.50	4	4	4	4	y	0.71	20	8	20	8	n	0.50	4	4	4	4	n	0.37	7	12	7	12	n	0.62	10	6	10	6	n	0.41	7	10	7	10	n	0.00	0	7	0	7	n	1.00	2	0	2	0	y	0.50	3	3	3	3	n	0.50	2	2	2	2	n	0.86	6	1	6	1	n	ENSMUSG00000097113.8	Gm19705	chr1	lncRNA	predicted gene, 19705
novel_NIR_231	chr1	136621134	136633277	+	136624133	136633277	5pMXE	ENSMUST00000181274.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000097448.2	Platr22	chr1	lncRNA	pluripotency associated transcript 22
novel_NIR_232	chr1	136624129	136633277	+	136624133	136633277	A5SS	ENSMUST00000181274.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	12	0	12	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000097448.2	Platr22	chr1	lncRNA	pluripotency associated transcript 22
novel_NIR_233	chr1	136652416	136652526	+	136652416	136652530	A3SS	ENSMUST00000181274.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000097448.2	Platr22	chr1	lncRNA	pluripotency associated transcript 22
novel_NIR_234	chr1	136876597	136877123	-	136876597	136876697	5pMXE	ENSMUST00000195428.2	novel	1.00	3	0	3	0	y	0.75	3	1	3	1	y	0.00	0	2	0	2	n	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	5	0	5	0	y	ENSMUSG00000026398.15	Nr5a2	chr1	protein_coding	nuclear receptor subfamily 5, group A, member 2
novel_NIR_235	chr1	136876597	136877123	-	136876597	136879840	A5SS	ENSMUST00000027649.14	novel	0.43	3	4	3	4	y	0.19	3	13	3	13	y	0.00	0	18	0	18	n	0.12	3	21	3	21	n	0.07	2	28	2	28	n	0.00	0	13	0	13	n	0.17	4	20	4	20	y	0.04	1	24	1	24	n	0.00	0	17	0	17	n	0.15	6	35	6	35	y	0.05	1	19	1	19	n	0.20	5	20	5	20	y	ENSMUSG00000026398.15	Nr5a2	chr1	protein_coding	nuclear receptor subfamily 5, group A, member 2
novel_NIR_236	chr1	136876597	136877123	-	136876597	136887965	A5SS	ENSMUST00000192357.6	novel	0.75	3	1	3	1	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.80	4	1	4	1	y	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.67	6	3	6	3	y	1.00	1	0	1	0	n	0.62	5	3	5	3	y	ENSMUSG00000026398.15	Nr5a2	chr1	protein_coding	nuclear receptor subfamily 5, group A, member 2
novel_NIR_237	chr1	136876622	136887965	-	136876597	136887965	A3SS	ENSMUST00000192357.6	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	3	3	3	3	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000026398.15	Nr5a2	chr1	protein_coding	nuclear receptor subfamily 5, group A, member 2
novel_NIR_238	chr1	136881327	136887965	-	136876597	136887965	A3SS	ENSMUST00000192357.6	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	ENSMUSG00000026398.15	Nr5a2	chr1	protein_coding	nuclear receptor subfamily 5, group A, member 2
novel_NIR_239	chr1	13739339	13742350	+	13739091	13742350	A5SS	ENSMUST00000088542.4	novel	0.29	8	20	8	20	y	0.26	6	17	6	17	y	0.14	4	25	4	25	n	0.18	6	27	6	27	y	0.06	3	51	3	51	n	0.12	2	14	2	14	n	0.06	2	31	2	31	n	0.20	3	12	3	12	y	0.04	1	27	1	27	n	0.14	7	43	7	43	n	0.10	3	26	3	26	n	0.04	2	47	2	47	n	ENSMUSG00000067813.4	Xkr9	chr1	protein_coding	X-linked Kx blood group related 9
novel_NIR_240	chr1	137996168	137998875	-	137996172	137998875	A3SS	ENSMUST00000112036.5	novel	0.00	0	15	0	15	n	0.00	0	17	0	17	n	0.00	0	17	0	17	n	0.09	1	10	1	10	n	0.00	0	15	0	15	n	0.20	2	8	2	8	y	0.00	0	17	0	17	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	16	0	16	n	0.00	0	15	0	15	n	ENSMUSG00000026395.17	Ptprc	chr1	protein_coding	protein tyrosine phosphatase, receptor type, C
novel_NIR_241	chr1	138414848	138426126	-	138414848	138443363	A5SS	ENSMUST00000027642.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.60	3	2	3	2	y	ENSMUSG00000026393.11	Nek7	chr1	protein_coding	NIMA (never in mitosis gene a)-related expressed kinase 7
novel_NIR_242	chr1	138489523	138534562	-	138489523	138547642	A5SS	ENSMUST00000187407.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026393.11	Nek7	chr1	protein_coding	NIMA (never in mitosis gene a)-related expressed kinase 7
novel_NIR_243	chr1	138781410	138782458	-	138781410	138783812	A5SS	ENSMUST00000193374.2	novel	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000079283.3	2310009B15Rik	chr1	protein_coding	RIKEN cDNA 2310009B15 gene
novel_NIR_244	chr1	138781410	138784038	-	138781410	138783812	A5SS	ENSMUST00000193374.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	4	2	4	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	ENSMUSG00000079283.3	2310009B15Rik	chr1	protein_coding	RIKEN cDNA 2310009B15 gene
novel_NIR_245	chr1	138781410	138784066	-	138781410	138783812	A5SS	ENSMUST00000193374.2	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000079283.3	2310009B15Rik	chr1	protein_coding	RIKEN cDNA 2310009B15 gene
novel_NIR_246	chr1	139350333	139350772	+	139350064	139350772	A5SS	ENSMUST00000200243.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.29	2	5	2	5	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.10	1	9	1	9	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000033964.13	Zbtb41	chr1	protein_coding	zinc finger and BTB domain containing 41
novel_NIR_247	chr1	139350333	139350772	+	139350161	139350772	A5SS	ENSMUST00000039867.10	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000033964.13	Zbtb41	chr1	protein_coding	zinc finger and BTB domain containing 41
novel_NIR_248	chr1	139445092	139450083	+	139445092	139445490	3pMXE	ENSMUST00000141842.2	novel	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.00	0	8	0	8	n	ENSMUSG00000026368.7	F13b	chr1	protein_coding	coagulation factor XIII, beta subunit
novel_NIR_249	chr1	139503281	139521492	-	139512690	139521492	3pMXE	ENSMUST00000170441.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000090623.4	Cfhr3	chr1	unprocessed_pseudogene	complement factor H-related 3
novel_NIR_250	chr1	139503283	139521492	-	139512690	139521492	3pMXE	ENSMUST00000170441.4	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	9	0	9	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000090623.4	Cfhr3	chr1	unprocessed_pseudogene	complement factor H-related 3
novel_NIR_251	chr1	139510064	139521492	-	139512690	139521492	3pMXE	ENSMUST00000170441.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000090623.4	Cfhr3	chr1	unprocessed_pseudogene	complement factor H-related 3
novel_NIR_252	chr1	139512711	139521492	-	139512690	139521492	A3SS	ENSMUST00000170441.4	novel	1.00	47	0	47	0	y	1.00	43	0	43	0	y	1.00	42	0	42	0	y	1.00	67	0	67	0	y	1.00	57	0	57	0	y	1.00	19	0	19	0	y	1.00	65	0	65	0	y	1.00	34	0	34	0	y	1.00	50	0	50	0	y	1.00	96	0	96	0	y	1.00	59	0	59	0	y	1.00	67	0	67	0	y	ENSMUSG00000090623.4	Cfhr3	chr1	unprocessed_pseudogene	complement factor H-related 3
novel_NIR_253	chr1	139512911	139521492	-	139512690	139521492	A3SS	ENSMUST00000170441.4	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000090623.4	Cfhr3	chr1	unprocessed_pseudogene	complement factor H-related 3
novel_NIR_254	chr1	139514926	139521492	-	139512690	139521492	A3SS	ENSMUST00000170441.4	novel	1.00	1	0	1	0	n	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000090623.4	Cfhr3	chr1	unprocessed_pseudogene	complement factor H-related 3
novel_NIR_255	chr1	139521674	139525294	-	139521674	139535978	A5SS	ENSMUST00000170441.4	novel	1.00	56	0	56	0	y	1.00	53	0	53	0	y	1.00	42	0	42	0	y	1.00	69	0	69	0	y	1.00	65	0	65	0	y	1.00	11	0	11	0	y	1.00	47	0	47	0	y	1.00	49	0	49	0	y	1.00	66	0	66	0	y	1.00	54	0	54	0	y	1.00	68	0	68	0	y	1.00	69	0	69	0	y	ENSMUSG00000090623.4	Cfhr3	chr1	unprocessed_pseudogene	complement factor H-related 3
novel_NIR_256	chr1	139521674	139549793	-	139521674	139535978	A5SS&ES	ENSMUST00000170441.4	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	11	0	11	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	ENSMUSG00000090623.4	Cfhr3	chr1	unprocessed_pseudogene	complement factor H-related 3
novel_NIR_257	chr1	139549969	139550342	-	139549969	139550314	A5SS	ENSMUST00000170441.4	novel	1.00	23	0	23	0	y	1.00	19	0	19	0	y	1.00	16	0	16	0	y	1.00	30	0	30	0	y	1.00	32	0	32	0	y	1.00	12	0	12	0	y	1.00	27	0	27	0	y	1.00	13	0	13	0	y	1.00	28	0	28	0	y	1.00	36	0	36	0	y	1.00	16	0	16	0	y	1.00	19	0	19	0	y	ENSMUSG00000090623.4	Cfhr3	chr1	unprocessed_pseudogene	complement factor H-related 3
novel_NIR_258	chr1	139549969	139550368	-	139549969	139550314	A5SS	ENSMUST00000170441.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000090623.4	Cfhr3	chr1	unprocessed_pseudogene	complement factor H-related 3
novel_NIR_259	chr1	139549969	139555874	-	139549969	139550314	A5SS&ES	ENSMUST00000170441.4	novel	1.00	14	0	14	0	y	1.00	9	0	9	0	y	1.00	13	0	13	0	y	1.00	14	0	14	0	y	1.00	9	0	9	0	y	1.00	5	0	5	0	y	1.00	22	0	22	0	y	1.00	7	0	7	0	y	1.00	12	0	12	0	y	1.00	16	0	16	0	y	1.00	21	0	21	0	y	1.00	18	0	18	0	y	ENSMUSG00000090623.4	Cfhr3	chr1	unprocessed_pseudogene	complement factor H-related 3
novel_NIR_260	chr1	139550536	139554884	-	139550536	139588576	A5SS	ENSMUST00000170441.4	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000090623.4	Cfhr3	chr1	unprocessed_pseudogene	complement factor H-related 3
novel_NIR_261	chr1	139550536	139555874	-	139550536	139588576	A5SS	ENSMUST00000170441.4	novel	1.00	29	0	29	0	y	1.00	21	0	21	0	y	1.00	18	0	18	0	y	1.00	39	0	39	0	y	1.00	32	0	32	0	y	1.00	12	0	12	0	y	1.00	47	0	47	0	y	1.00	27	0	27	0	y	1.00	35	0	35	0	y	1.00	41	0	41	0	y	1.00	31	0	31	0	y	1.00	42	0	42	0	y	ENSMUSG00000090623.4	Cfhr3	chr1	unprocessed_pseudogene	complement factor H-related 3
novel_NIR_262	chr1	139660214	139660824	-	139660214	139661149	A5SS	ENSMUST00000027612.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.73	11	4	11	4	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000070594.11	Cfhr4	chr1	protein_coding	complement factor H-related 4
novel_NIR_263	chr1	139732118	139741172	-	139732118;139733215	139733106;139741172	ES	ENSMUST00000194186.6	novel	0.58	7	5.0	7	4;6	y	0.37	5	8.5	5	6;11	y	0.67	1	0.5	1	1;0	n	0.40	5	7.5	5	9;6	y	0.78	9	2.5	9	2;3	y	0.00	0	1.0	0	0;2	n	0.46	12	14.0	12	16;12	y	0.67	1	0.5	1	0;1	n	0.64	7	4.0	7	5;3	y	0.38	9	15.0	9	19;11	y	0.44	8	10.0	8	8;12	y	0.78	19	5.5	19	6;5	y	ENSMUSG00000033898.18	Cfhr2	chr1	protein_coding	complement factor H-related 2
novel_NIR_264	chr1	139750104	139786293	-	139750104;139773083	139772910;139786293	ES	ENSMUST00000239380.2	novel	0.12	18	134.5	18	0;269	n	0.15	17	93.0	17	1;185	y	0.14	18	114.5	18	0;229	n	0.11	22	184.5	22	2;367	n	0.13	35	236.0	35	2;470	n	0.13	11	71.0	11	2;140	n	0.16	35	186.5	35	1;372	y	0.11	13	107.0	13	0;214	n	0.08	13	144.0	13	1;287	n	0.14	31	198.0	31	3;393	n	0.13	19	130.5	19	2;259	n	0.19	51	222.5	51	0;445	y	ENSMUSG00000033898.18	Cfhr2	chr1	protein_coding	complement factor H-related 2
novel_NIR_265	chr1	139758975	139772910	-	139750104	139772910	A3SS	ENSMUST00000239380.2	novel	1.00	24	0	24	0	n	0.93	13	1	13	1	n	1.00	20	0	20	0	n	0.93	25	2	25	2	n	0.95	39	2	39	2	n	0.86	12	2	12	2	n	0.96	25	1	25	1	n	1.00	14	0	14	0	y	0.96	27	1	27	1	n	0.90	26	3	26	3	n	0.95	35	2	35	2	n	1.00	29	0	29	0	n	ENSMUSG00000033898.18	Cfhr2	chr1	protein_coding	complement factor H-related 2
novel_NIR_266	chr1	139793912	139806203	-	139793912	139804743	A5SS&ES	ENSMUST00000134229.3	novel	1.00	57	0	57	0	y	1.00	59	0	59	0	y	1.00	41	0	41	0	y	1.00	50	0	50	0	y	1.00	92	0	92	0	y	1.00	33	0	33	0	y	1.00	58	0	58	0	y	1.00	48	0	48	0	y	1.00	48	0	48	0	y	1.00	66	0	66	0	y	1.00	58	0	58	0	y	1.00	56	0	56	0	y	ENSMUSG00000089991.3	Gm16332	chr1	unprocessed_pseudogene	predicted gene 16332
novel_NIR_267	chr1	139793912	139831110	-	139793912	139804743	A5SS&ES	ENSMUST00000134229.3	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	6	0	6	0	y	1.00	1	0	1	0	n	ENSMUSG00000089991.3	Gm16332	chr1	unprocessed_pseudogene	predicted gene 16332
novel_NIR_268	chr1	139793912	139842275	-	139793912	139804743	A5SS&ES	ENSMUST00000134229.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	3	0	3	0	y	ENSMUSG00000089991.3	Gm16332	chr1	unprocessed_pseudogene	predicted gene 16332
novel_NIR_269	chr1	139806350	139809023	-	139806375	139809023	A3SS	ENSMUST00000134229.3	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	5	0	5	0	y	1.00	2	0	2	0	y	0.33	1	2	1	2	n	ENSMUSG00000089991.3	Gm16332	chr1	unprocessed_pseudogene	predicted gene 16332
novel_NIR_270	chr1	139806379	139809023	-	139806375	139809023	A3SS	ENSMUST00000134229.3	novel	1.00	54	0	54	0	y	1.00	43	0	43	0	y	1.00	29	0	29	0	y	1.00	40	0	40	0	y	1.00	62	0	62	0	y	1.00	19	0	19	0	y	1.00	47	0	47	0	y	1.00	27	0	27	0	y	1.00	42	0	42	0	y	1.00	47	0	47	0	y	1.00	36	0	36	0	y	0.97	64	2	64	2	y	ENSMUSG00000089991.3	Gm16332	chr1	unprocessed_pseudogene	predicted gene 16332
novel_NIR_271	chr1	139807248	139809023	-	139806375	139809023	A3SS	ENSMUST00000134229.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000089991.3	Gm16332	chr1	unprocessed_pseudogene	predicted gene 16332
novel_NIR_272	chr1	139809199	139810665	-	139809199	139810657	A5SS	ENSMUST00000134229.3	novel	1.00	56	0	56	0	y	1.00	39	0	39	0	y	1.00	44	0	44	0	y	1.00	40	0	40	0	y	1.00	77	0	77	0	y	1.00	39	0	39	0	y	1.00	59	0	59	0	y	1.00	53	0	53	0	y	1.00	66	0	66	0	y	1.00	53	0	53	0	y	1.00	58	0	58	0	y	1.00	75	0	75	0	y	ENSMUSG00000089991.3	Gm16332	chr1	unprocessed_pseudogene	predicted gene 16332
novel_NIR_273	chr1	139811113	139868193	-	139867465	139868193	3pMXE	ENSMUST00000126680.2	novel	0.83	5	1	5	1	y	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	5	0	5	0	y	0.00	0	2	0	2	n	0.89	8	1	8	1	y	-	-	-	-	-	-	0.67	2	1	2	1	y	0.88	7	1	7	1	y	0.75	6	2	6	2	y	ENSMUSG00000085867.2	Gm5834	chr1	unprocessed_pseudogene	predicted pseudogene 5834
novel_NIR_274	chr1	139842451	139842827	-	139842451	139842823	A5SS	ENSMUST00000134229.3	novel	0.06	1	17	1	17	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	17	0	17	n	0.39	11	17	11	17	y	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.00	0	23	0	23	n	0.00	0	19	0	19	n	0.00	0	10	0	10	n	0.57	12	9	12	9	y	ENSMUSG00000089991.3	Gm16332	chr1	unprocessed_pseudogene	predicted gene 16332
novel_NIR_275	chr1	139852681	139858465	-	139851914	139858465	A3SS	ENSMUST00000134229.3	novel	1.00	7	0	7	0	y	1.00	8	0	8	0	y	1.00	11	0	11	0	y	1.00	10	0	10	0	y	0.85	17	3	17	3	y	0.79	11	3	11	3	y	1.00	5	0	5	0	y	0.73	8	3	8	3	y	1.00	8	0	8	0	y	1.00	6	0	6	0	y	1.00	5	0	5	0	y	1.00	11	0	11	0	y	ENSMUSG00000089991.3	Gm16332	chr1	unprocessed_pseudogene	predicted gene 16332
novel_NIR_276	chr1	139857409	139858465	-	139851914	139858465	A3SS	ENSMUST00000134229.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000089991.3	Gm16332	chr1	unprocessed_pseudogene	predicted gene 16332
novel_NIR_277	chr1	139864191	139868193	-	139867465	139868193	3pMXE	ENSMUST00000126680.2	novel	0.97	39	1	39	1	y	1.00	15	0	15	0	y	0.98	49	1	49	1	y	1.00	48	0	48	0	y	0.98	58	1	58	1	y	1.00	40	0	40	0	y	0.95	38	2	38	2	y	0.98	54	1	54	1	y	1.00	39	0	39	0	y	0.98	52	1	52	1	y	0.96	23	1	23	1	y	0.96	43	2	43	2	y	ENSMUSG00000085867.2	Gm5834	chr1	unprocessed_pseudogene	predicted pseudogene 5834
novel_NIR_278	chr1	139867462	139868193	-	139867465	139868193	A3SS	ENSMUST00000126680.2	novel	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.71	5	2	5	2	y	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.50	2	2	2	2	y	ENSMUSG00000085867.2	Gm5834	chr1	unprocessed_pseudogene	predicted pseudogene 5834
novel_NIR_279	chr1	139868366;139920011	139919844;139921208	-	139868366;139888830	139887358;139921208	MXE	ENSMUST00000126680.2	novel	0.00	0.0	4.0	0;0	8;0	n	0.00	0.0	7.5	0;0	15;0	n	0.00	0.0	12.5	0;0	20;5	n	0.00	0.0	15.0	0;0	26;4	n	0.00	0.0	14.0	0;0	28;0	n	0.00	0.0	9.5	0;0	19;0	n	0.00	0.0	4.0	0;0	8;0	n	0.31	4.5	10.0	0;9	20;0	n	0.32	4.0	8.5	4;4	17;0	y	0.00	0.0	8.0	0;0	16;0	n	0.00	0.0	10.0	0;0	15;5	n	0.03	0.5	14.5	0;1	29;0	n	ENSMUSG00000085867.2	Gm5834	chr1	unprocessed_pseudogene	predicted pseudogene 5834
novel_NIR_280	chr1	139888830	139889132	-	139888830	139921208	A5SS	ENSMUST00000126680.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	5	0	5	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	0.00	0	5	0	5	n	-	-	-	-	-	-	ENSMUSG00000085867.2	Gm5834	chr1	unprocessed_pseudogene	predicted pseudogene 5834
novel_NIR_281	chr1	139888830	139919844	-	139888830	139921208	A5SS	ENSMUST00000126680.2	novel	1.00	19	0	19	0	y	1.00	9	0	9	0	y	0.84	26	5	26	5	y	0.87	27	4	27	4	y	1.00	42	0	42	0	y	1.00	2	0	2	0	y	1.00	25	0	25	0	y	1.00	6	0	6	0	n	1.00	26	0	26	0	n	1.00	25	0	25	0	y	0.77	17	5	17	5	y	1.00	30	0	30	0	n	ENSMUSG00000085867.2	Gm5834	chr1	unprocessed_pseudogene	predicted pseudogene 5834
novel_NIR_282	chr1	139888830;139920011	139919844;139921208	-	139888830	139921208	cassetteExon	ENSMUST00000126680.2	novel	1.00	9.5	0	19;0	0	n	1.00	4.5	0	9;0	0	n	0.72	13.0	5	26;0	5	n	0.77	13.5	4	27;0	4	n	1.00	21.0	0	42;0	0	n	1.00	1.0	0	2;0	0	n	1.00	12.5	0	25;0	0	n	1.00	7.5	0	6;9	0	y	1.00	15.0	0	26;4	0	y	1.00	12.5	0	25;0	0	n	0.63	8.5	5	17;0	5	n	1.00	15.5	0	30;1	0	n	ENSMUSG00000085867.2	Gm5834	chr1	unprocessed_pseudogene	predicted pseudogene 5834
novel_NIR_283	chr1	140016578	140026106	-	140016578	140028546	A5SS	ENSMUST00000192919.6	novel	0.32	20	42	20	42	y	0.35	23	43	23	43	y	0.40	27	40	27	40	y	0.41	18	26	18	26	y	0.26	22	62	22	62	y	0.36	13	23	13	23	y	0.37	21	36	21	36	y	0.29	15	36	15	36	y	0.34	14	27	14	27	y	0.36	20	35	20	35	y	0.42	17	23	17	23	y	0.27	13	35	13	35	y	ENSMUSG00000026365.16	Cfh	chr1	protein_coding	complement component factor h
novel_NIR_284	chr1	140016578	140026702	-	140016578	140028546	A5SS	ENSMUST00000192919.6	novel	0.19	10	42	10	42	n	0.30	18	43	18	43	n	0.26	14	40	14	40	y	0.13	4	26	4	26	n	0.35	33	62	33	62	y	0.34	12	23	12	23	y	0.35	19	36	19	36	y	0.29	15	36	15	36	y	0.40	18	27	18	27	n	0.38	21	35	21	35	y	0.42	17	23	17	23	y	0.29	14	35	14	35	n	ENSMUSG00000026365.16	Cfh	chr1	protein_coding	complement component factor h
novel_NIR_285	chr1	140016578;140026739	140026702;140028546	-	140016578	140028546	cassetteExon	ENSMUST00000192919.6	novel	0.11	5.0	42	10;0	42	n	0.57	58.0	43	18;98	43	y	0.15	7.0	40	14;0	40	n	0.07	2.0	26	4;0	26	n	0.21	16.5	62	33;0	62	n	0.21	6.0	23	12;0	23	n	0.21	9.5	36	19;0	36	n	0.17	7.5	36	15;0	36	n	0.25	9.0	27	18;0	27	n	0.23	10.5	35	21;0	35	n	0.27	8.5	23	17;0	23	n	0.17	7.0	35	14;0	35	n	ENSMUSG00000026365.16	Cfh	chr1	protein_coding	complement component factor h
novel_NIR_286	chr1	140016578;140071790	140071669;140075393	-	140016578;140064628	140028546;140075393	MXE	ENSMUST00000192919.6	novel	0.05	1.0	21.0	2;0	42;0	n	0.28	8.5	22.0	4;13	43;1	y	0.00	0.0	20.0	0;0	40;0	n	0.07	1.0	13.0	2;0	26;0	n	0.03	1.0	31.0	2;0	62;0	n	0.00	0.0	11.5	0;0	23;0	n	0.00	0.0	18.0	0;0	36;0	n	0.10	2.0	18.0	4;0	36;0	n	0.00	0.0	13.5	0;0	27;0	n	0.08	1.5	17.5	3;0	35;0	n	0.04	0.5	11.5	1;0	23;0	n	0.03	0.5	18.0	1;0	35;1	n	ENSMUSG00000026365.16	Cfh	chr1	protein_coding	complement component factor h
novel_NIR_287	chr1	140026160	140026608	-	140016626	140026608	A3SS	ENSMUST00000123238.2	novel	0.92	23	2	23	2	y	1.00	19	0	19	0	y	1.00	19	0	19	0	y	0.93	14	1	14	1	y	0.70	21	9	21	9	y	1.00	10	0	10	0	y	0.89	16	2	16	2	y	1.00	9	0	9	0	y	1.00	13	0	13	0	y	0.89	24	3	24	3	y	0.87	13	2	13	2	y	0.79	19	5	19	5	y	ENSMUSG00000026365.16	Cfh	chr1	protein_coding	complement component factor h
novel_NIR_288	chr1	140028225	140028546	-	140016578	140028546	A3SS	ENSMUST00000192919.6	novel	0.50	42	42	42	42	y	0.55	52	43	52	43	y	0.65	75	40	75	40	y	0.38	16	26	16	26	y	0.57	81	62	81	62	y	0.60	35	23	35	23	y	0.61	56	36	56	36	y	0.53	40	36	40	36	y	0.60	41	27	41	27	y	0.68	73	35	73	35	y	0.68	48	23	48	23	n	0.54	41	35	41	35	y	ENSMUSG00000026365.16	Cfh	chr1	protein_coding	complement component factor h
novel_NIR_289	chr1	140028722	140029461	-	140028722	140063885	A5SS	ENSMUST00000192880.6	novel	1.00	13	0	13	0	y	0.91	10	1	10	1	y	1.00	16	0	16	0	y	0.93	26	2	26	2	y	1.00	29	0	29	0	y	1.00	5	0	5	0	y	1.00	13	0	13	0	y	1.00	13	0	13	0	y	1.00	5	0	5	0	y	0.90	18	2	18	2	y	1.00	13	0	13	0	y	0.95	18	1	18	1	y	ENSMUSG00000026365.16	Cfh	chr1	protein_coding	complement component factor h
novel_NIR_290	chr1	140030215	140030446	-	140029496	140030446	A3SS	ENSMUST00000192919.6	novel	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.80	4	1	4	1	y	ENSMUSG00000026365.16	Cfh	chr1	protein_coding	complement component factor h
novel_NIR_291	chr1	140030226	140030446	-	140029496	140030446	A3SS	ENSMUST00000192919.6	novel	0.60	6	4	6	4	y	0.45	5	6	5	6	y	0.67	10	5	10	5	n	0.00	0	4	0	4	n	0.57	8	6	8	6	y	0.67	6	3	6	3	y	0.54	7	6	7	6	n	0.60	9	6	9	6	y	0.14	1	6	1	6	n	0.59	13	9	13	9	y	1.00	1	0	1	0	n	0.89	8	1	8	1	y	ENSMUSG00000026365.16	Cfh	chr1	protein_coding	complement component factor h
novel_NIR_292	chr1	140030264	140030446	-	140029496	140030446	A3SS	ENSMUST00000192919.6	novel	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.94	85	5	85	5	n	0.00	0	4	0	4	n	0.97	185	6	185	6	y	0.94	48	3	48	3	y	0.25	2	6	2	6	n	0.95	109	6	109	6	y	0.00	0	6	0	6	n	0.87	62	9	62	9	y	-	-	-	-	-	-	0.99	106	1	106	1	y	ENSMUSG00000026365.16	Cfh	chr1	protein_coding	complement component factor h
novel_NIR_293	chr1	140036678	140046325	-	140036681	140046325	A3SS	ENSMUST00000111977.8	novel	0.29	5	12	5	12	y	0.31	5	11	5	11	y	0.18	7	31	7	31	y	0.43	15	20	15	20	y	0.00	0	41	0	41	n	0.00	0	17	0	17	n	0.28	10	26	10	26	y	0.09	2	21	2	21	n	0.17	4	20	4	20	y	0.15	7	41	7	41	y	0.00	0	9	0	9	n	0.22	8	28	8	28	y	ENSMUSG00000026365.16	Cfh	chr1	protein_coding	complement component factor h
novel_NIR_294	chr1	140036681	140040171	-	140036678	140040171	A3SS	ENSMUST00000111976.9	novel	0.24	332	1050	332	1050	y	0.41	373	538	373	538	y	0.39	721	1112	721	1112	y	0.32	413	880	413	880	y	0.33	808	1621	808	1621	y	0.33	345	706	345	706	y	0.35	941	1784	941	1784	y	0.32	685	1480	685	1480	y	0.30	363	835	363	835	y	0.33	487	1001	487	1001	y	0.28	307	773	307	773	y	0.25	392	1199	392	1199	y	ENSMUSG00000026365.16	Cfh	chr1	protein_coding	complement component factor h
novel_NIR_295	chr1	140036681	140040171	-	140036681	140046325	A5SS	ENSMUST00000111977.8	novel	0.97	332	12	332	12	y	0.97	373	11	373	11	y	0.96	721	31	721	31	y	0.95	413	20	413	20	y	0.95	808	41	808	41	y	0.95	345	17	345	17	y	0.97	941	26	941	26	y	0.97	685	21	685	21	y	0.95	363	20	363	20	y	0.92	487	41	487	41	y	0.97	307	9	307	9	y	0.93	392	28	392	28	y	ENSMUSG00000026365.16	Cfh	chr1	protein_coding	complement component factor h
novel_NIR_296	chr1	140059614	140063885	-	140028722	140063885	A3SS	ENSMUST00000192880.6	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000026365.16	Cfh	chr1	protein_coding	complement component factor h
novel_NIR_297	chr1	140064628	140071675	-	140064628	140075393	A5SS	ENSMUST00000192919.6	novel	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000026365.16	Cfh	chr1	protein_coding	complement component factor h
novel_NIR_298	chr1	140304174	140304821	+	140304174	140310739	A3SS	ENSMUST00000120709.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000052726.17	Kcnt2	chr1	protein_coding	potassium channel, subfamily T, member 2
novel_NIR_299	chr1	140309420	140310739	+	140304174	140310739	A5SS	ENSMUST00000120709.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.86	6	1	6	1	y	1.00	3	0	3	0	y	0.89	8	1	8	1	y	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	8	0	8	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	1	0	1	0	n	ENSMUSG00000052726.17	Kcnt2	chr1	protein_coding	potassium channel, subfamily T, member 2
novel_NIR_300	chr1	140309445	140310739	+	140304174	140310739	A5SS	ENSMUST00000120709.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000052726.17	Kcnt2	chr1	protein_coding	potassium channel, subfamily T, member 2
novel_NIR_301	chr1	140310527	140310739	+	140304174	140310739	A5SS	ENSMUST00000120709.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.80	4	1	4	1	y	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000052726.17	Kcnt2	chr1	protein_coding	potassium channel, subfamily T, member 2
novel_NIR_302	chr1	140310833;140311072	140310998;140352931	+	140310833	140352931	cassetteExon	ENSMUST00000120709.8	novel	0.33	1.0	2	0;2	2	n	0.33	0.5	1	0;1	1	n	0.28	3.5	9	4;3	9	y	1.00	0.5	0	1;0	0	n	0.40	2.0	3	2;2	3	y	0.12	1.0	7	0;2	7	n	0.00	0.0	1	0;0	1	n	0.20	0.5	2	0;1	2	n	0.33	0.5	1	1;0	1	n	0.00	0.0	1	0;0	1	n	0.33	0.5	1	0;1	1	n	0.33	1.0	2	1;1	2	n	ENSMUSG00000052726.17	Kcnt2	chr1	protein_coding	potassium channel, subfamily T, member 2
novel_NIR_303	chr1	140311072	140352931	+	140310833	140352931	A5SS	ENSMUST00000120709.8	novel	0.50	2	2	2	2	y	0.50	1	1	1	1	n	0.25	3	9	3	9	n	-	-	-	-	-	-	0.40	2	3	2	3	n	0.22	2	7	2	7	y	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.33	1	2	1	2	n	ENSMUSG00000052726.17	Kcnt2	chr1	protein_coding	potassium channel, subfamily T, member 2
novel_NIR_304	chr1	140317382	140352931	+	140310833	140352931	A5SS	ENSMUST00000120709.8	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.18	2	9	2	9	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000052726.17	Kcnt2	chr1	protein_coding	potassium channel, subfamily T, member 2
novel_NIR_305	chr1	140477237	140480698	+	140446709	140480698	A5SS	ENSMUST00000193606.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000052726.17	Kcnt2	chr1	protein_coding	potassium channel, subfamily T, member 2
novel_NIR_306	chr1	140477237	140480698	+	140461733	140480698	A5SS	ENSMUST00000120709.8	novel	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.17	1	5	1	5	n	0.20	2	8	2	8	y	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000052726.17	Kcnt2	chr1	protein_coding	potassium channel, subfamily T, member 2
novel_NIR_307	chr1	140498221	140501368	+	140498221	140501333	A3SS	ENSMUST00000120709.8	novel	0.27	3	8	3	8	y	0.17	1	5	1	5	n	0.00	0	17	0	17	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.38	3	5	3	5	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	ENSMUSG00000052726.17	Kcnt2	chr1	protein_coding	potassium channel, subfamily T, member 2
novel_NIR_308	chr1	143619461	143620785	+	143617492	143620785	A5SS	ENSMUST00000050491.11	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.60	3	2	3	2	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	ENSMUSG00000018196.19	Glrx2	chr1	protein_coding	glutaredoxin 2 (thioltransferase)
novel_NIR_309	chr1	143620961	143622254	+	143620961	143621616	A3SS&ES	ENSMUST00000185367.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000018196.19	Glrx2	chr1	protein_coding	glutaredoxin 2 (thioltransferase)
novel_NIR_310	chr1	143677971	143681242	+	143677971	143678666	A3SS&ES	ENSMUST00000185539.2	novel	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	6	0	6	n	ENSMUSG00000018189.13	Uchl5	chr1	protein_coding	ubiquitin carboxyl-terminal esterase L5
novel_NIR_311	chr1	150251375	150254892	-	150251375	150257250	A5SS	ENSMUST00000097546.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000006010.15	Odr4	chr1	protein_coding	odr4 GPCR localization factor homolog
novel_NIR_312	chr1	150295748	150297387	+	150295754	150297387	A5SS	ENSMUST00000124973.9	novel	0.00	0	19	0	19	n	0.00	0	16	0	16	n	0.06	4	60	4	60	n	0.00	0	28	0	28	n	0.00	0	42	0	42	n	0.00	0	22	0	22	n	0.00	0	34	0	34	n	0.03	1	31	1	31	n	0.04	1	24	1	24	n	0.17	9	43	9	43	y	0.00	0	24	0	24	n	0.00	0	27	0	27	n	ENSMUSG00000006005.19	Tpr	chr1	protein_coding	translocated promoter region, nuclear basket protein
novel_NIR_313	chr1	150332088	150333900	-	150332088	150336403	A5SS	ENSMUST00000006171.16	novel	0.17	24	120	24	120	y	0.15	24	139	24	139	y	0.19	29	125	29	125	y	0.14	31	183	31	183	n	0.25	63	187	63	187	y	0.26	15	43	15	43	y	0.15	21	116	21	116	y	0.11	14	115	14	115	n	0.16	17	89	17	89	n	0.13	25	167	25	167	n	0.22	18	64	18	64	y	0.15	18	101	18	101	y	ENSMUSG00000006014.17	Prg4	chr1	protein_coding	proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)
novel_NIR_314	chr1	150332088	150333900	-	150332088;150333358	150333239;150333900	ES	ENSMUST00000164600.8	novel	1.00	24	0.0	24	0;0	y	1.00	24	0.0	24	0;0	y	0.94	29	2.0	29	1;3	y	0.94	31	2.0	31	4;0	y	1.00	63	0.0	63	0;0	y	1.00	15	0.0	15	0;0	y	0.91	21	2.0	21	3;1	y	1.00	14	0.0	14	0;0	y	0.94	17	1.0	17	0;2	y	0.96	25	1.0	25	0;2	y	0.95	18	1.0	18	0;2	y	0.92	18	1.5	18	3;0	y	ENSMUSG00000006014.17	Prg4	chr1	protein_coding	proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)
novel_NIR_315	chr1	150336522	150339950	-	150336522	150341249	A5SS	ENSMUST00000111902.9	novel	0.00	0	9	0	9	n	0.00	0	27	0	27	n	0.00	0	15	0	15	n	0.00	0	37	0	37	n	0.00	0	25	0	25	n	0.00	0	11	0	11	n	0.00	0	26	0	26	n	0.00	0	17	0	17	n	0.00	0	17	0	17	n	0.00	0	23	0	23	n	0.15	2	11	2	11	y	0.04	1	23	1	23	n	ENSMUSG00000006014.17	Prg4	chr1	protein_coding	proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)
novel_NIR_316	chr1	150341343	150341900	-	150341347	150341900	A3SS	ENSMUST00000162367.8	novel	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.00	0	17	0	17	n	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.23	3	10	3	10	y	ENSMUSG00000006014.17	Prg4	chr1	protein_coding	proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)
novel_NIR_317	chr1	151014385	151014644	+	151014385	151014655	A3SS	ENSMUST00000188305.2	novel	0.57	12	9	12	9	y	0.91	10	1	10	1	y	-	-	-	-	-	-	0.90	36	4	36	4	y	0.76	22	7	22	7	y	1.00	2	0	2	0	y	0.88	15	2	15	2	y	-	-	-	-	-	-	0.85	28	5	28	5	y	0.70	31	13	31	13	y	0.75	12	4	12	4	y	0.86	18	3	18	3	y	ENSMUSG00000102095.2	C730036E19Rik	chr1	lncRNA	RIKEN cDNA C730036E19 gene
novel_NIR_318	chr1	151014895	151015453	+	151014780	151015453	A5SS	ENSMUST00000188305.2	novel	0.05	3	53	3	53	n	0.15	7	39	7	39	y	0.00	0	1	0	1	n	0.07	5	69	5	69	n	0.07	4	57	4	57	n	0.00	0	5	0	5	n	0.03	2	56	2	56	n	0.00	0	9	0	9	n	0.07	4	51	4	51	n	0.03	3	92	3	92	n	0.05	2	36	2	36	n	0.10	3	27	3	27	n	ENSMUSG00000102095.2	C730036E19Rik	chr1	lncRNA	RIKEN cDNA C730036E19 gene
novel_NIR_319	chr1	151015504	151016046	+	151015504	151017278	A3SS	ENSMUST00000188305.2	novel	0.00	0	46	0	46	n	0.05	3	61	3	61	n	-	-	-	-	-	-	0.07	5	64	5	64	n	0.07	4	50	4	50	n	0.00	0	2	0	2	n	0.02	1	40	1	40	n	0.00	0	8	0	8	n	0.18	10	47	10	47	y	0.04	4	86	4	86	n	0.02	1	43	1	43	n	0.08	3	33	3	33	n	ENSMUSG00000102095.2	C730036E19Rik	chr1	lncRNA	RIKEN cDNA C730036E19 gene
novel_NIR_320	chr1	151231027	151231880	+	151229844	151231880	A5SS	ENSMUST00000097543.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	ENSMUSG00000023150.15	Ivns1abp	chr1	protein_coding	influenza virus NS1A binding protein
novel_NIR_321	chr1	151231034	151231880	+	151229844	151231880	A5SS	ENSMUST00000097543.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000023150.15	Ivns1abp	chr1	protein_coding	influenza virus NS1A binding protein
novel_NIR_322	chr1	151231062	151231880	+	151229844	151231880	A5SS	ENSMUST00000097543.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	12	0	12	0	y	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.75	3	1	3	1	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	5	0	5	0	y	0.00	0	3	0	3	n	ENSMUSG00000023150.15	Ivns1abp	chr1	protein_coding	influenza virus NS1A binding protein
novel_NIR_323	chr1	151279647	151281156	-	151279647	151281167	A5SS	ENSMUST00000064771.12	novel	0.00	0	22	0	22	n	0.00	0	19	0	19	n	0.00	0	28	0	28	n	0.00	0	30	0	30	n	0.03	1	32	1	32	n	0.07	1	14	1	14	n	0.00	0	24	0	24	n	0.22	2	7	2	7	y	0.00	0	17	0	17	n	0.00	0	21	0	21	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	ENSMUSG00000052748.15	Swt1	chr1	protein_coding	SWT1 RNA endoribonuclease homolog (S. cerevisiae)
novel_NIR_324	chr1	151319077	151320691	+	151319077	151323977	A3SS	ENSMUST00000189655.2	novel	-	-	-	-	-	-	0.67	2	1	2	1	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.60	3	2	3	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	1	0	1	0	n	ENSMUSG00000053286.12	Trmt1l	chr1	protein_coding	tRNA methyltransferase 1 like
novel_NIR_325	chr1	151625979	151630466	-	151625979	151630669	A5SS	ENSMUST00000186444.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.80	4	1	4	1	y	0.50	1	1	1	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	1	2	1	2	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	ENSMUSG00000100594.2	2810414N06Rik	chr1	lncRNA	RIKEN cDNA 2810414N06 gene
novel_NIR_326	chr1	151625979	151630594	-	151625979	151630669	A5SS	ENSMUST00000186444.2	novel	1.00	5	0	5	0	y	1.00	8	0	8	0	y	1.00	7	0	7	0	y	0.75	3	1	3	1	y	0.89	8	1	8	1	y	0.86	6	1	6	1	y	0.50	3	3	3	3	y	1.00	12	0	12	0	y	0.80	4	1	4	1	y	0.88	14	2	14	2	y	1.00	5	0	5	0	y	0.80	4	1	4	1	y	ENSMUSG00000100594.2	2810414N06Rik	chr1	lncRNA	RIKEN cDNA 2810414N06 gene
novel_NIR_327	chr1	152736272	152736514	-	152736272	152737432	A5SS	ENSMUST00000073441.13	novel	0.06	1	16	1	16	n	0.00	0	9	0	9	n	0.05	1	21	1	21	n	0.06	2	33	2	33	n	0.06	2	30	2	30	n	0.00	0	11	0	11	n	0.07	1	13	1	13	n	0.00	0	14	0	14	n	0.07	1	14	1	14	n	0.10	3	28	3	28	n	0.20	3	12	3	12	y	0.05	1	21	1	21	n	ENSMUSG00000042772.16	Smg7	chr1	protein_coding	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)
novel_NIR_328	chr1	152753928	152778260	-	152746542	152778260	A3SS	ENSMUST00000073441.13	novel	0.07	1	13	1	13	n	0.00	0	4	0	4	n	0.05	1	18	1	18	n	0.10	1	9	1	9	n	0.21	5	19	5	19	y	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.14	1	6	1	6	n	0.08	1	11	1	11	n	0.18	2	9	2	9	y	0.33	4	8	4	8	y	0.12	2	15	2	15	n	ENSMUSG00000042772.16	Smg7	chr1	protein_coding	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)
novel_NIR_329	chr1	153352308	153353807	-	153352308	153353787	A5SS	ENSMUST00000190544.7	novel	0.00	0	4	0	4	n	0.38	3	5	3	5	y	0.60	3	2	3	2	y	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.18	2	9	2	9	y	0.00	0	2	0	2	n	ENSMUSG00000042699.12	Dhx9	chr1	protein_coding	DEAH (Asp-Glu-Ala-His) box polypeptide 9
novel_NIR_330	chr1	153773840	153775739	-	153746122	153775739	A3SS	ENSMUST00000123490.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045968.8	Teddm2	chr1	protein_coding	transmembrane epididymal family member 2
novel_NIR_331	chr1	153779812	153780283	+	153779666	153780283	A5SS	ENSMUST00000153134.3	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026473.17	Glul	chr1	protein_coding	glutamate-ammonia ligase (glutamine synthetase)
novel_NIR_332	chr1	154956529	154959223	-	154956529	154956938	5pMXE	ENSMUST00000181160.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000096950.3	Gm9530	chr1	lncRNA	predicted gene 9530
novel_NIR_333	chr1	155073181	155080958	+	155073181	155073883	3pMXE	ENSMUST00000195302.6	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	1.00	3	0	3	0	y	0.33	1	2	1	2	n	1.00	4	0	4	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000026470.15	Stx6	chr1	protein_coding	syntaxin 6
novel_NIR_334	chr1	155073181	155080958	+	155073181	155077686	A3SS	ENSMUST00000027743.13	novel	0.00	0	7	0	7	n	0.00	0	16	0	16	n	0.03	1	30	1	30	n	0.07	2	25	2	25	n	0.00	0	34	0	34	n	0.14	3	18	3	18	n	0.05	1	18	1	18	n	0.27	4	11	4	11	y	0.21	4	15	4	15	y	0.04	1	23	1	23	n	0.10	1	9	1	9	n	0.00	0	10	0	10	n	ENSMUSG00000026470.15	Stx6	chr1	protein_coding	syntaxin 6
novel_NIR_335	chr1	155073181	155080958	+	155073181	155082968	A3SS	ENSMUST00000192690.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000026470.15	Stx6	chr1	protein_coding	syntaxin 6
novel_NIR_336	chr1	155073181	155082831	+	155073181	155073883	3pMXE	ENSMUST00000195302.6	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000026470.15	Stx6	chr1	protein_coding	syntaxin 6
novel_NIR_337	chr1	155073181	155082831	+	155073181	155082968	A3SS	ENSMUST00000192690.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026470.15	Stx6	chr1	protein_coding	syntaxin 6
novel_NIR_338	chr1	155073181	155083057	+	155073181	155073883	3pMXE	ENSMUST00000195302.6	novel	0.43	3	4	3	4	y	0.00	0	1	0	1	n	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	3	0	3	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000026470.15	Stx6	chr1	protein_coding	syntaxin 6
novel_NIR_339	chr1	155073181	155083057	+	155073181	155077686	3pMXE	ENSMUST00000027743.13	novel	0.30	3	7	3	7	y	0.00	0	16	0	16	n	0.06	2	30	2	30	n	0.00	0	25	0	25	n	0.00	0	34	0	34	n	0.14	3	18	3	18	n	0.00	0	18	0	18	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	23	0	23	n	0.10	1	9	1	9	n	0.00	0	10	0	10	n	ENSMUSG00000026470.15	Stx6	chr1	protein_coding	syntaxin 6
novel_NIR_340	chr1	155073181	155083057	+	155073181	155082968	A3SS	ENSMUST00000192690.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000026470.15	Stx6	chr1	protein_coding	syntaxin 6
novel_NIR_341	chr1	155383975	155402772	-	155397583	155402772	3pMXE	ENSMUST00000097531.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000073535.6	Gm5532	chr1	lncRNA	predicted gene 5532
novel_NIR_342	chr1	155383975	155402772	-	155401180	155402772	3pMXE	ENSMUST00000194133.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000073535.6	Gm5532	chr1	lncRNA	predicted gene 5532
novel_NIR_343	chr1	155443427	155446848	+	155443427	155463186	A3SS	ENSMUST00000097529.5	novel	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.33	2	4	2	4	y	0.20	1	4	1	4	n	0.07	1	14	1	14	n	ENSMUSG00000033701.14	Acbd6	chr1	protein_coding	acyl-Coenzyme A binding domain containing 6
novel_NIR_344	chr1	155443427	155446852	+	155443427	155463186	A3SS	ENSMUST00000097529.5	novel	0.56	5	4	5	4	y	0.55	6	5	6	5	y	0.30	3	7	3	7	y	0.25	1	3	1	3	n	0.50	4	4	4	4	y	0.43	3	4	3	4	y	0.24	4	13	4	13	y	0.50	3	3	3	3	y	0.50	4	4	4	4	y	0.78	14	4	14	4	y	0.00	0	4	0	4	n	0.12	2	14	2	14	n	ENSMUSG00000033701.14	Acbd6	chr1	protein_coding	acyl-Coenzyme A binding domain containing 6
novel_NIR_345	chr1	155443427	155446852	+	155443427	155477200	A3SS	ENSMUST00000035560.9	novel	0.15	5	28	5	28	y	0.15	6	34	6	34	y	0.07	3	41	3	41	n	0.03	1	38	1	38	n	0.10	4	37	4	37	n	0.14	3	18	3	18	n	0.06	4	58	4	58	n	0.17	3	15	3	15	y	0.10	4	38	4	38	n	0.29	14	34	14	34	y	0.00	0	46	0	46	n	0.05	2	41	2	41	n	ENSMUSG00000033701.14	Acbd6	chr1	protein_coding	acyl-Coenzyme A binding domain containing 6
novel_NIR_346	chr1	155654597	155655596	-	155654597	155655185	A5SS	ENSMUST00000111764.8	novel	0.67	4	2	4	2	y	0.00	0	6	0	6	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.75	3	1	3	1	y	0.00	0	2	0	2	n	0.67	4	2	4	2	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.25	1	3	1	3	n	0.45	5	6	5	6	y	1.00	4	0	4	0	y	ENSMUSG00000033684.15	Qsox1	chr1	protein_coding	quiescin Q6 sulfhydryl oxidase 1
novel_NIR_347	chr1	155836936	155838221	-	155835577	155838221	A3SS	ENSMUST00000124495.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033671.19	Cep350	chr1	protein_coding	centrosomal protein 350
novel_NIR_348	chr1	155836936	155838221	-	155836933	155838221	A3SS	ENSMUST00000138762.8	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.29	2	5	2	5	y	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	ENSMUSG00000033671.19	Cep350	chr1	protein_coding	centrosomal protein 350
novel_NIR_349	chr1	155897479	155898046	-	155883455	155898046	A3SS	ENSMUST00000027738.14	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026466.17	Tor1aip1	chr1	protein_coding	torsin A interacting protein 1
novel_NIR_350	chr1	155897479	155898046	-	155894276	155898046	A3SS	ENSMUST00000130995.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026466.17	Tor1aip1	chr1	protein_coding	torsin A interacting protein 1
novel_NIR_351	chr1	155897479	155898046	-	155895769	155898046	A3SS	ENSMUST00000136331.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026466.17	Tor1aip1	chr1	protein_coding	torsin A interacting protein 1
novel_NIR_352	chr1	155907219	155907391	-	155907219	155908652	A5SS	ENSMUST00000136397.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026466.17	Tor1aip1	chr1	protein_coding	torsin A interacting protein 1
novel_NIR_353	chr1	155911666	155935157	+	155911837	155935157	A5SS	ENSMUST00000133152.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	ENSMUSG00000050565.17	Tor1aip2	chr1	protein_coding	torsin A interacting protein 2
novel_NIR_354	chr1	155911837	155916821	+	155911666	155916821	A5SS	ENSMUST00000111754.9	novel	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.69	9	4	9	4	y	0.00	0	11	0	11	n	0.58	7	5	7	5	y	0.38	3	5	3	5	y	0.56	5	4	5	4	y	0.30	3	7	3	7	y	0.00	0	6	0	6	n	0.38	3	5	3	5	y	0.38	3	5	3	5	y	0.00	0	6	0	6	n	ENSMUSG00000050565.17	Tor1aip2	chr1	protein_coding	torsin A interacting protein 2
novel_NIR_355	chr1	155911837	155916821	+	155911837	155935157	A3SS	ENSMUST00000133152.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	9	0	9	0	n	-	-	-	-	-	-	1.00	7	0	7	0	n	1.00	3	0	3	0	n	1.00	5	0	5	0	n	0.75	3	1	3	1	y	-	-	-	-	-	-	0.75	3	1	3	1	y	1.00	3	0	3	0	y	0.00	0	1	0	1	n	ENSMUSG00000050565.17	Tor1aip2	chr1	protein_coding	torsin A interacting protein 2
novel_NIR_356	chr1	155911837	155916821	+	155911854	155916821	A5SS	ENSMUST00000111757.10	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.90	9	1	9	1	y	-	-	-	-	-	-	1.00	7	0	7	0	y	1.00	3	0	3	0	y	1.00	5	0	5	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	0.60	3	2	3	2	y	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000050565.17	Tor1aip2	chr1	protein_coding	torsin A interacting protein 2
novel_NIR_357	chr1	155911837	155916821	+	155912300	155916821	5pMXE	ENSMUST00000128941.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	9	0	9	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	1.00	3	0	3	0	y	1.00	5	0	5	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000050565.17	Tor1aip2	chr1	protein_coding	torsin A interacting protein 2
novel_NIR_358	chr1	155911837	155916821	+	155916748	155916821	5pMXE	ENSMUST00000097526.3	novel	0.11	2	17	2	17	n	0.00	0	16	0	16	n	0.18	9	42	9	42	y	0.00	0	45	0	45	n	0.10	7	64	7	64	n	0.09	3	31	3	31	n	0.08	5	55	5	55	n	0.15	3	17	3	17	y	0.00	0	28	0	28	n	0.08	3	35	3	35	n	0.09	3	32	3	32	n	0.00	0	45	0	45	n	ENSMUSG00000050565.17	Tor1aip2	chr1	protein_coding	torsin A interacting protein 2
novel_NIR_359	chr1	155911837	155927040	+	155911837	155935157	A3SS	ENSMUST00000133152.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000050565.17	Tor1aip2	chr1	protein_coding	torsin A interacting protein 2
novel_NIR_360	chr1	155911837;155916880	155916821;155935157	+	155911837	155935157	cassetteExon	ENSMUST00000133152.2	novel	1.00	1.0	0	2;0	0	n	-	-	-	-	-	-	1.00	6.5	0	9;4	0	y	-	-	-	-	-	-	1.00	4.0	0	7;1	0	n	1.00	4.5	0	3;6	0	y	1.00	3.0	0	5;1	0	n	0.60	1.5	1	3;0	1	n	-	-	-	-	-	-	0.60	1.5	1	3;0	1	n	1.00	1.5	0	3;0	0	n	0.00	0.0	1	0;0	1	n	ENSMUSG00000050565.17	Tor1aip2	chr1	protein_coding	torsin A interacting protein 2
novel_NIR_361	chr1	155916748	155927025	+	155916748	155935157	A3SS	ENSMUST00000060404.5	novel	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.00	0	19	0	19	n	0.00	0	16	0	16	n	0.00	0	5	0	5	n	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.20	2	8	2	8	y	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	ENSMUSG00000050565.17	Tor1aip2	chr1	protein_coding	torsin A interacting protein 2
novel_NIR_362	chr1	155916880	155935157	+	155916748	155935157	A5SS	ENSMUST00000060404.5	novel	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.24	4	13	4	13	y	0.00	0	19	0	19	n	0.06	1	16	1	16	n	0.55	6	5	6	5	y	0.06	1	15	1	15	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	ENSMUSG00000050565.17	Tor1aip2	chr1	protein_coding	torsin A interacting protein 2
novel_NIR_363	chr1	155916880	155935157	+	155916880	155927040	3pMXE	ENSMUST00000111754.9	novel	0.00	0	42	0	42	n	0.00	0	28	0	28	n	0.05	4	72	4	72	n	0.00	0	67	0	67	n	0.01	1	85	1	85	n	0.15	6	35	6	35	y	0.01	1	72	1	72	n	0.00	0	37	0	37	n	0.00	0	38	0	38	n	0.00	0	65	0	65	n	0.00	0	42	0	42	n	0.00	0	86	0	86	n	ENSMUSG00000050565.17	Tor1aip2	chr1	protein_coding	torsin A interacting protein 2
novel_NIR_364	chr1	155935333	155937384	+	155935333	155937334	A3SS	ENSMUST00000111757.10	novel	0.07	4	52	4	52	n	0.03	1	31	1	31	n	0.06	7	120	7	120	n	0.07	7	90	7	90	n	0.02	2	100	2	100	n	0.09	7	70	7	70	n	0.10	8	69	8	69	n	0.13	9	62	9	62	n	0.08	5	56	5	56	n	0.16	17	89	17	89	y	0.08	5	61	5	61	n	0.11	11	92	11	92	n	ENSMUSG00000050565.17	Tor1aip2	chr1	protein_coding	torsin A interacting protein 2
novel_NIR_365	chr1	156468182	156468566	+	156468182	156468563	A3SS	ENSMUST00000166172.9	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	8	8	8	8	y	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.33	1	2	1	2	n	0.67	2	1	2	1	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.20	1	4	1	4	n	ENSMUSG00000026596.14	Abl2	chr1	protein_coding	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)
novel_NIR_366	chr1	156484166	156486253	-	156484166	156485935	5pMXE	ENSMUST00000154353.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000060519.12	Tor3a	chr1	protein_coding	torsin family 3, member A
novel_NIR_367	chr1	156484166	156486253	-	156484166	156494169	A5SS	ENSMUST00000156861.8	novel	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	24	0	24	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.20	3	12	3	12	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	ENSMUSG00000060519.12	Tor3a	chr1	protein_coding	torsin family 3, member A
novel_NIR_368	chr1	156494347	156496960	-	156494347	156496684	A5SS&ES	ENSMUST00000150557.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000060519.12	Tor3a	chr1	protein_coding	torsin family 3, member A
novel_NIR_369	chr1	156494347	156496960	-	156494347	156496941	A5SS	ENSMUST00000156861.8	novel	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	42	0	42	n	0.00	0	7	0	7	n	0.04	1	22	1	22	n	0.00	0	16	0	16	n	0.00	0	21	0	21	n	0.00	0	7	0	7	n	0.20	1	4	1	4	n	0.15	2	11	2	11	y	0.00	0	11	0	11	n	0.00	0	9	0	9	n	ENSMUSG00000060519.12	Tor3a	chr1	protein_coding	torsin family 3, member A
novel_NIR_370	chr1	156494347	156496960	-	156494347	156501100	A5SS	ENSMUST00000190607.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000060519.12	Tor3a	chr1	protein_coding	torsin family 3, member A
novel_NIR_371	chr1	156725691	156728156	-	156720582	156728156	A3SS	ENSMUST00000192343.6	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.22	2	7	2	7	y	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.40	2	3	2	3	n	0.00	0	1	0	1	n	ENSMUSG00000026594.15	Ralgps2	chr1	protein_coding	Ral GEF with PH domain and SH3 binding motif 2
novel_NIR_372	chr1	156735348	156766800	-	156735348	156766300	5pMXE	ENSMUST00000189648.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000026594.15	Ralgps2	chr1	protein_coding	Ral GEF with PH domain and SH3 binding motif 2
novel_NIR_373	chr1	156735348	156766800	-	156735348	156766502	5pMXE	ENSMUST00000190762.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000026594.15	Ralgps2	chr1	protein_coding	Ral GEF with PH domain and SH3 binding motif 2
novel_NIR_374	chr1	156735348	156766800	-	156735348	156766922	A5SS	ENSMUST00000171292.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000026594.15	Ralgps2	chr1	protein_coding	Ral GEF with PH domain and SH3 binding motif 2
novel_NIR_375	chr1	156735348	156767347	-	156735348	156766300	5pMXE	ENSMUST00000189648.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000026594.15	Ralgps2	chr1	protein_coding	Ral GEF with PH domain and SH3 binding motif 2
novel_NIR_376	chr1	156735348	156767347	-	156735348	156766502	5pMXE	ENSMUST00000190762.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000026594.15	Ralgps2	chr1	protein_coding	Ral GEF with PH domain and SH3 binding motif 2
novel_NIR_377	chr1	156735348	156767347	-	156735348	156766922	5pMXE	ENSMUST00000171292.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000026594.15	Ralgps2	chr1	protein_coding	Ral GEF with PH domain and SH3 binding motif 2
novel_NIR_378	chr1	156735348	156767347	-	156735348	156767059	5pMXE	ENSMUST00000172057.8	novel	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.06	1	15	1	15	n	0.00	0	11	0	11	n	0.11	1	8	1	8	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.00	0	23	0	23	n	0.00	0	7	0	7	n	0.25	2	6	2	6	y	ENSMUSG00000026594.15	Ralgps2	chr1	protein_coding	Ral GEF with PH domain and SH3 binding motif 2
novel_NIR_379	chr1	156926976	156927650	-	156926973	156927650	A3SS	ENSMUST00000187546.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026592.14	Tex35	chr1	protein_coding	testis expressed 35
novel_NIR_380	chr1	156926976	156927650	-	156926976;156927317	156927274;156927650	ES	ENSMUST00000118207.8	novel	-	-	-	-	-	-	0.00	0	1.0	0	0;2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0.0	3	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026592.14	Tex35	chr1	protein_coding	testis expressed 35
novel_NIR_381	chr1	156926976	156927650	-	156927317	156927650	A3SS&ES	ENSMUST00000027884.13	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026592.14	Tex35	chr1	protein_coding	testis expressed 35
novel_NIR_382	chr1	157293391	157294119	+	157293391	157316013	A3SS	ENSMUST00000119891.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	ENSMUSG00000033488.12	Cryzl2	chr1	protein_coding	crystallin zeta like 2
novel_NIR_383	chr1	157294817	157299758	+	157294817	157316013	A3SS	ENSMUST00000193791.6	novel	0.00	0	8	0	8	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.06	1	15	1	15	n	0.00	0	6	0	6	n	0.18	2	9	2	9	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	ENSMUSG00000033488.12	Cryzl2	chr1	protein_coding	crystallin zeta like 2
novel_NIR_384	chr1	157319291	157319478	+	157319182	157319478	A5SS	ENSMUST00000194220.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000033488.12	Cryzl2	chr1	protein_coding	crystallin zeta like 2
novel_NIR_385	chr1	157352423	157353042	+	157352423	157356734	A3SS	ENSMUST00000086130.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000026589.15	Sec16b	chr1	protein_coding	SEC16 homolog B (S. cerevisiae)
novel_NIR_386	chr1	157354025	157356734	+	157352423	157356734	A5SS	ENSMUST00000086130.9	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.67	4	2	4	2	y	0.50	2	2	2	2	y	0.20	1	4	1	4	n	0.60	3	2	3	2	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000026589.15	Sec16b	chr1	protein_coding	SEC16 homolog B (S. cerevisiae)
novel_NIR_387	chr1	157354251	157356734	+	157352423	157356734	A5SS	ENSMUST00000086130.9	novel	1.00	5	0	5	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	0.75	6	2	6	2	y	0.71	5	2	5	2	y	0.00	0	4	0	4	n	0.50	2	2	2	2	n	0.50	3	3	3	3	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.50	1	1	1	1	n	1.00	6	0	6	0	y	ENSMUSG00000026589.15	Sec16b	chr1	protein_coding	SEC16 homolog B (S. cerevisiae)
novel_NIR_388	chr1	157358962	157359616	+	157358962	157359623	A3SS	ENSMUST00000086130.9	novel	0.20	12	48	12	48	y	0.14	5	31	5	31	n	0.05	2	41	2	41	n	0.05	4	71	4	71	n	0.16	15	80	15	80	y	0.21	7	26	7	26	y	0.20	16	65	16	65	y	0.09	5	48	5	48	n	0.04	2	48	2	48	n	0.16	13	69	13	69	y	0.19	10	42	10	42	y	0.05	3	60	3	60	n	ENSMUSG00000026589.15	Sec16b	chr1	protein_coding	SEC16 homolog B (S. cerevisiae)
novel_NIR_389	chr1	159872323	159902601	+	159872323;159898373	159898270;159902601	ES	ENSMUST00000163892.8	novel	0.00	0	6.5	0	8;5	n	0.00	0	7.5	0	5;10	n	0.00	0	3.5	0	5;2	n	0.00	0	15.5	0	10;21	n	0.15	2	11.0	2	7;15	y	0.00	0	3.5	0	2;5	n	0.00	0	13.5	0	15;12	n	0.18	1	4.5	1	7;2	n	0.00	0	7.5	0	7;8	n	0.00	0	12.0	0	9;15	n	0.18	3	13.5	3	14;13	y	0.08	1	11.0	1	12;10	n	ENSMUSG00000090394.9	4930523C07Rik	chr1	protein_coding	RIKEN cDNA 4930523C07 gene
novel_NIR_390	chr1	160022881	160024520	+	160022881	160024491	A3SS	ENSMUST00000078878.14	novel	-	-	-	-	-	-	1.00	16	0	16	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	18	0	18	0	y	1.00	5	0	5	0	y	1.00	9	0	9	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	16	0	16	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000058267.14	Mrps14	chr1	protein_coding	mitochondrial ribosomal protein S14
novel_NIR_391	chr1	160023017	160024516	+	160023115	160024516	A5SS	ENSMUST00000097193.3	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.06	1	15	1	15	n	0.50	6	6	6	6	y	0.38	3	5	3	5	y	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.11	1	8	1	8	n	0.14	1	6	1	6	n	ENSMUSG00000058267.14	Mrps14	chr1	protein_coding	mitochondrial ribosomal protein S14
novel_NIR_392	chr1	160023115	160024520	+	160023115	160024516	A3SS	ENSMUST00000097193.3	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	15	0	15	n	0.25	2	6	2	6	y	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.14	1	6	1	6	n	0.08	1	12	1	12	n	0.11	1	8	1	8	n	0.00	0	6	0	6	n	ENSMUSG00000058267.14	Mrps14	chr1	protein_coding	mitochondrial ribosomal protein S14
novel_NIR_393	chr1	160024212	160024516	+	160023115	160024516	A5SS	ENSMUST00000097193.3	novel	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.25	2	6	2	6	y	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	ENSMUSG00000058267.14	Mrps14	chr1	protein_coding	mitochondrial ribosomal protein S14
novel_NIR_394	chr1	160063418	160064196	-	160059437	160064196	A3SS	ENSMUST00000028052.12	novel	0.16	4	21	4	21	y	0.00	0	14	0	14	n	0.00	0	37	0	37	n	0.00	0	25	0	25	n	0.00	0	35	0	35	n	0.00	0	22	0	22	n	0.00	0	25	0	25	n	0.00	0	25	0	25	n	0.00	0	16	0	16	n	0.00	0	47	0	47	n	0.00	0	30	0	30	n	0.00	0	44	0	44	n	ENSMUSG00000026721.17	Rabgap1l	chr1	protein_coding	RAB GTPase activating protein 1-like
novel_NIR_395	chr1	160559439	160561099	-	160551759	160561099	A3SS	ENSMUST00000028049.13	novel	0.00	0	8	0	8	n	0.40	4	6	4	6	y	0.00	0	12	0	12	n	0.00	0	20	0	20	n	0.00	0	26	0	26	n	0.00	0	14	0	14	n	0.00	0	18	0	18	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.04	1	23	1	23	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	ENSMUSG00000026721.17	Rabgap1l	chr1	protein_coding	RAB GTPase activating protein 1-like
novel_NIR_396	chr1	160626827	160627775	+	160626827	160628106	A3SS	ENSMUST00000195784.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000102852.2	Gm37083	chr1	lncRNA	predicted gene, 37083
novel_NIR_397	chr1	160806179	160815011	+	160812420	160815011	5pMXE	ENSMUST00000194592.2	novel	0.00	0	4	0	4	n	0.20	2	8	2	8	y	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	16	0	16	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	18	0	18	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	ENSMUSG00000026715.13	Serpinc1	chr1	protein_coding	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
novel_NIR_398	chr1	160806285	160808812	+	160806285	160815102	A3SS	ENSMUST00000195760.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.12	1	7	1	7	n	0.67	2	1	2	1	y	1.00	1	0	1	0	n	ENSMUSG00000026715.13	Serpinc1	chr1	protein_coding	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
novel_NIR_399	chr1	160806285	160813951	+	160806285	160815102	A3SS	ENSMUST00000195760.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000026715.13	Serpinc1	chr1	protein_coding	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
novel_NIR_400	chr1	160806285	160815044	+	160806285	160812367	A3SS&ES	ENSMUST00000191936.2	novel	0.25	3	9	3	9	y	0.00	0	9	0	9	n	0.33	2	4	2	4	y	0.35	8	15	8	15	y	0.25	7	21	7	21	n	0.00	0	2	0	2	n	0.29	6	15	6	15	y	-	-	-	-	-	-	0.31	4	9	4	9	y	0.16	5	26	5	26	y	0.18	3	14	3	14	y	0.23	6	20	6	20	y	ENSMUSG00000026715.13	Serpinc1	chr1	protein_coding	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
novel_NIR_401	chr1	160806285	160815044	+	160806285	160815011	A3SS	ENSMUST00000064725.11	novel	0.19	3	13	3	13	y	0.00	0	15	0	15	n	0.13	2	13	2	13	n	0.19	8	35	8	35	y	0.16	7	36	7	36	y	0.00	0	15	0	15	n	0.18	6	27	6	27	y	0.00	0	10	0	10	n	0.09	4	40	4	40	n	0.07	5	64	5	64	n	0.09	3	31	3	31	n	0.12	6	43	6	43	n	ENSMUSG00000026715.13	Serpinc1	chr1	protein_coding	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
novel_NIR_402	chr1	160806285	160815044	+	160806285	160815102	A3SS	ENSMUST00000195760.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	0.67	2	1	2	1	y	1.00	8	0	8	0	y	1.00	7	0	7	0	y	0.00	0	1	0	1	n	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	0.42	5	7	5	7	y	0.75	3	1	3	1	y	1.00	6	0	6	0	y	ENSMUSG00000026715.13	Serpinc1	chr1	protein_coding	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
novel_NIR_403	chr1	160806285	160815044	+	160806285	160816949	A3SS	ENSMUST00000195438.6	novel	0.27	3	8	3	8	y	0.00	0	16	0	16	n	0.18	2	9	2	9	y	0.26	8	23	8	23	y	0.29	7	17	7	17	n	0.00	0	8	0	8	n	0.19	6	26	6	26	y	0.00	0	7	0	7	n	0.17	4	19	4	19	y	0.26	5	14	5	14	y	0.20	3	12	3	12	y	0.29	6	15	6	15	y	ENSMUSG00000026715.13	Serpinc1	chr1	protein_coding	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
novel_NIR_404	chr1	160812420	160815044	+	160812420	160815011	A3SS	ENSMUST00000194592.2	novel	0.00	0	4	0	4	n	0.20	2	8	2	8	y	0.33	2	4	2	4	y	0.00	0	12	0	12	n	0.00	0	8	0	8	n	1.00	2	0	2	0	y	0.06	1	16	1	16	n	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.10	2	18	2	18	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	ENSMUSG00000026715.13	Serpinc1	chr1	protein_coding	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
novel_NIR_405	chr1	160812420	160815044	+	160812420	160816949	A3SS	ENSMUST00000191936.2	novel	0.00	0	14	0	14	n	0.18	2	9	2	9	y	0.22	2	7	2	7	y	0.00	0	14	0	14	n	0.00	0	19	0	19	n	1.00	2	0	2	0	y	0.06	1	15	1	15	n	0.00	0	2	0	2	n	0.07	1	13	1	13	n	0.12	2	15	2	15	n	0.00	0	18	0	18	n	0.00	0	5	0	5	n	ENSMUSG00000026715.13	Serpinc1	chr1	protein_coding	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
novel_NIR_406	chr1	160812420	160817091	+	160812420	160815011	A3SS&ES	ENSMUST00000194592.2	novel	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.77	27	8	27	8	y	-	-	-	-	-	-	0.00	0	16	0	16	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	18	0	18	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	ENSMUSG00000026715.13	Serpinc1	chr1	protein_coding	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
novel_NIR_407	chr1	160812420	160817091	+	160812420	160816949	A3SS	ENSMUST00000191936.2	novel	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.59	27	19	27	19	y	-	-	-	-	-	-	0.00	0	15	0	15	n	0.00	0	2	0	2	n	0.00	0	13	0	13	n	0.00	0	15	0	15	n	0.00	0	18	0	18	n	0.00	0	5	0	5	n	ENSMUSG00000026715.13	Serpinc1	chr1	protein_coding	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
novel_NIR_408	chr1	160821181	160822891	+	160821185	160822891	A5SS	ENSMUST00000195438.6	novel	1.00	112	0	112	0	y	1.00	105	0	105	0	y	1.00	108	0	108	0	y	1.00	141	0	141	0	y	1.00	188	0	188	0	y	1.00	60	0	60	0	y	1.00	132	0	132	0	y	1.00	88	0	88	0	y	1.00	115	0	115	0	y	1.00	175	0	175	0	y	0.97	114	3	114	3	y	1.00	158	0	158	0	y	ENSMUSG00000026715.13	Serpinc1	chr1	protein_coding	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
novel_NIR_409	chr1	160859274	160859375	-	160847976	160859375	A3SS	ENSMUST00000171748.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.50	3	3	3	3	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	ENSMUSG00000043467.20	Zbtb37	chr1	protein_coding	zinc finger and BTB domain containing 37
novel_NIR_410	chr1	160859274	160859375	-	160857311	160859375	A3SS	ENSMUST00000162226.9	novel	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.50	3	3	3	3	y	0.38	3	5	3	5	y	0.11	1	8	1	8	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.29	2	5	2	5	y	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.14	1	6	1	6	n	0.38	3	5	3	5	y	ENSMUSG00000043467.20	Zbtb37	chr1	protein_coding	zinc finger and BTB domain containing 37
novel_NIR_411	chr1	160862885	160863322	+	160862027	160863322	A5SS	ENSMUST00000160152.8	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.38	3	5	3	5	y	0.00	0	4	0	4	n	0.00	0	1	0	1	n	ENSMUSG00000053332.14	Gas5	chr1	lncRNA	growth arrest specific 5
novel_NIR_412	chr1	160862885	160863322	+	160862289	160863322	A5SS	ENSMUST00000161005.8	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.38	3	5	3	5	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000053332.14	Gas5	chr1	lncRNA	growth arrest specific 5
novel_NIR_413	chr1	160864422	160865565	+	160864422	160865795	A3SS	ENSMUST00000161005.8	novel	0.20	1	4	1	4	n	0.50	4	4	4	4	y	0.00	0	4	0	4	n	0.67	2	1	2	1	y	0.29	2	5	2	5	y	-	-	-	-	-	-	0.20	1	4	1	4	n	0.00	0	3	0	3	n	1.00	3	0	3	0	y	0.50	3	3	3	3	n	0.29	2	5	2	5	n	-	-	-	-	-	-	ENSMUSG00000053332.14	Gas5	chr1	lncRNA	growth arrest specific 5
novel_NIR_414	chr1	160864422;160865611	160865565;160865795	+	160864422	160865795	cassetteExon	ENSMUST00000161005.8	novel	0.11	0.5	4	1;0	4	n	0.33	2.0	4	4;0	4	n	0.00	0.0	4	0;0	4	n	0.50	1.0	1	2;0	1	n	0.17	1.0	5	2;0	5	n	-	-	-	-	-	-	0.11	0.5	4	1;0	4	n	0.00	0.0	3	0;0	3	n	1.00	1.5	0	3;0	0	n	0.33	1.5	3	3;0	3	n	0.29	2.0	5	2;2	5	y	-	-	-	-	-	-	ENSMUSG00000053332.14	Gas5	chr1	lncRNA	growth arrest specific 5
novel_NIR_415	chr1	160864894	160865075	+	160864422	160865075	A5SS	ENSMUST00000159119.8	novel	-	-	-	-	-	-	0.25	1	3	1	3	n	0.33	1	2	1	2	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000053332.14	Gas5	chr1	lncRNA	growth arrest specific 5
novel_NIR_416	chr1	160896749	160897490	-	160896749	160898113	A5SS	ENSMUST00000159922.3	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000026709.11	Dars2	chr1	protein_coding	aspartyl-tRNA synthetase 2 (mitochondrial)
novel_NIR_417	chr1	160902500	160905803	+	160902500	160905799	A3SS	ENSMUST00000028035.14	novel	0.00	0	11	0	11	n	0.22	2	7	2	7	y	0.00	0	8	0	8	n	0.00	0	18	0	18	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	ENSMUSG00000026708.17	Cenpl	chr1	protein_coding	centromere protein L
novel_NIR_418	chr1	160902500	160905803	+	160902500	160905899	A3SS	ENSMUST00000192150.6	novel	0.00	0	5	0	5	n	0.20	2	8	2	8	y	0.00	0	2	0	2	n	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	15	0	15	n	0.00	0	7	0	7	n	ENSMUSG00000026708.17	Cenpl	chr1	protein_coding	centromere protein L
novel_NIR_419	chr1	160902500	160905909	+	160902500	160905799	A3SS	ENSMUST00000028035.14	novel	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	18	0	18	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.15	2	11	2	11	y	0.06	1	16	1	16	n	0.00	0	9	0	9	n	0.08	1	11	1	11	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	ENSMUSG00000026708.17	Cenpl	chr1	protein_coding	centromere protein L
novel_NIR_420	chr1	160902500	160905909	+	160902500	160905899	A3SS	ENSMUST00000192150.6	novel	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.00	0	3	0	3	n	0.25	2	6	2	6	y	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.20	1	4	1	4	n	0.00	0	15	0	15	n	0.00	0	7	0	7	n	ENSMUSG00000026708.17	Cenpl	chr1	protein_coding	centromere protein L
novel_NIR_421	chr1	160916747	160917484	-	160916694	160917484	A3SS	ENSMUST00000117467.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000026705.17	Klhl20	chr1	protein_coding	kelch-like 20
novel_NIR_422	chr1	160916747	160917484	-	160916767	160917484	A3SS	ENSMUST00000195584.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000026705.17	Klhl20	chr1	protein_coding	kelch-like 20
novel_NIR_423	chr1	161071912	161076929	-	161071912	161078327	A5SS	ENSMUST00000156318.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000026701.16	Prdx6	chr1	protein_coding	peroxiredoxin 6
novel_NIR_424	chr1	161071912	161078015	-	161071912	161078327	A5SS	ENSMUST00000156318.8	novel	0.83	5	1	5	1	y	0.00	0	1	0	1	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.77	10	3	10	3	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	6	0	6	0	y	1.00	6	0	6	0	y	0.83	5	1	5	1	y	ENSMUSG00000026701.16	Prdx6	chr1	protein_coding	peroxiredoxin 6
novel_NIR_425	chr1	161071912	161078015	-	161071912	161078592	A5SS	ENSMUST00000192639.6	novel	0.12	5	38	5	38	n	0.00	0	35	0	35	n	0.06	2	30	2	30	n	0.09	3	31	3	31	n	0.06	3	44	3	44	n	0.04	1	24	1	24	n	0.17	10	50	10	50	y	0.00	0	18	0	18	n	0.05	2	35	2	35	n	0.15	6	34	6	34	y	0.11	6	48	6	48	n	0.12	5	35	5	35	n	ENSMUSG00000026701.16	Prdx6	chr1	protein_coding	peroxiredoxin 6
novel_NIR_426	chr1	161071912	161078564	-	161071912	161078327	A5SS	ENSMUST00000156318.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000026701.16	Prdx6	chr1	protein_coding	peroxiredoxin 6
novel_NIR_427	chr1	161071912	161078564	-	161077930	161078564	3pMXE	ENSMUST00000130867.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026701.16	Prdx6	chr1	protein_coding	peroxiredoxin 6
novel_NIR_428	chr1	161074983	161075811	-	161074983	161078327	A5SS	ENSMUST00000155135.2	novel	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.18	2	9	2	9	y	0.00	0	5	0	5	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	7	0	7	n	ENSMUSG00000026701.16	Prdx6	chr1	protein_coding	peroxiredoxin 6
novel_NIR_429	chr1	161074983	161075811	-	161074983	161078564	A5SS	ENSMUST00000156678.8	novel	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.17	2	10	2	10	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	ENSMUSG00000026701.16	Prdx6	chr1	protein_coding	peroxiredoxin 6
novel_NIR_430	chr1	161077039	161078327	-	161071912	161078327	A3SS	ENSMUST00000156318.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	6	0	6	0	y	-	-	-	-	-	-	0.50	3	3	3	3	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000026701.16	Prdx6	chr1	protein_coding	peroxiredoxin 6
novel_NIR_431	chr1	161077039	161078327	-	161074983	161078327	A3SS	ENSMUST00000155135.2	novel	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.43	6	8	6	8	y	0.00	0	2	0	2	n	0.25	3	9	3	9	y	0.00	0	5	0	5	n	0.25	1	3	1	3	n	1.00	1	0	1	0	n	0.00	0	9	0	9	n	0.12	1	7	1	7	n	ENSMUSG00000026701.16	Prdx6	chr1	protein_coding	peroxiredoxin 6
novel_NIR_432	chr1	161077039	161078564	-	161074983	161078564	A3SS	ENSMUST00000156678.8	novel	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.25	2	6	2	6	y	0.00	0	3	0	3	n	0.00	0	11	0	11	n	ENSMUSG00000026701.16	Prdx6	chr1	protein_coding	peroxiredoxin 6
novel_NIR_433	chr1	161077039	161078564	-	161077930	161078564	3pMXE	ENSMUST00000130867.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026701.16	Prdx6	chr1	protein_coding	peroxiredoxin 6
novel_NIR_434	chr1	161672927	161676211	-	161672927;161674879	161674774;161676211	ES	ENSMUST00000192570.2	novel	0.19	2	8.5	2	7;10	y	0.00	0	10.0	0	6;14	n	0.02	1	42.5	1	43;42	n	0.00	0	13.5	0	16;11	n	0.11	2	16.0	2	16;16	n	0.00	0	22.0	0	24;20	n	0.00	0	12.5	0	14;11	n	0.00	0	21.0	0	22;20	n	0.00	0	6.5	0	5;8	n	0.00	0	14.0	0	14;14	n	0.00	0	7.5	0	9;6	n	0.00	0	14.5	0	13;16	n	ENSMUSG00000040297.13	Suco	chr1	protein_coding	SUN domain containing ossification factor
novel_NIR_435	chr1	161796848	161797943	+	161796848	161797796	A3SS	ENSMUST00000028021.7	novel	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.17	2	10	2	10	y	0.00	0	15	0	15	n	0.50	3	3	3	3	y	0.00	0	13	0	13	n	ENSMUSG00000026698.9	Pigc	chr1	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class C
novel_NIR_436	chr1	161796848	161797943	+	161796848	161853113	A3SS	ENSMUST00000161826.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000103393.2	Gm38304	chr1	lncRNA	predicted gene, 38304
novel_NIR_437	chr1	162422263	162424618	+	162420246	162424618	A5SS	ENSMUST00000132158.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000026696.16	Vamp4	chr1	protein_coding	vesicle-associated membrane protein 4
novel_NIR_438	chr1	162542412	162542961	-	162541956	162542961	A3SS	ENSMUST00000182149.8	novel	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	17	0	17	n	0.22	2	7	2	7	y	0.00	0	18	0	18	n	0.00	0	18	0	18	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.00	0	18	0	18	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	ENSMUSG00000040225.16	Prrc2c	chr1	protein_coding	proline-rich coiled-coil 2C
novel_NIR_439	chr1	162550115	162550679	-	162549108	162550679	A3SS	ENSMUST00000182149.8	novel	0.00	0	8	0	8	n	0.40	2	3	2	3	y	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	22	0	22	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	ENSMUSG00000040225.16	Prrc2c	chr1	protein_coding	proline-rich coiled-coil 2C
novel_NIR_440	chr1	162640218	162641145	-	162640222	162641145	A3SS	ENSMUST00000111525.8	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.67	2	1	2	1	y	0.00	0	5	0	5	n	0.00	0	1	0	1	n	ENSMUSG00000026692.13	Fmo4	chr1	protein_coding	flavin containing monooxygenase 4
novel_NIR_441	chr1	16301315	16381179	-	16301315	16415928	A5SS	ENSMUST00000162751.8	novel	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000025920.20	Stau2	chr1	protein_coding	staufen double-stranded RNA binding protein 2
novel_NIR_442	chr1	163772504	163773735	+	163772504	163773772	A3SS	ENSMUST00000161908.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.75	3	1	3	1	y	ENSMUSG00000026584.15	Scyl3	chr1	protein_coding	SCY1-like 3 (S. cerevisiae)
novel_NIR_443	chr1	163781285	163781718	-	163773994	163781718	A3SS	ENSMUST00000097493.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000041406.15	BC055324	chr1	protein_coding	cDNA sequence BC055324
novel_NIR_444	chr1	163971601	163973727	-	163971654	163973727	A3SS	ENSMUST00000161943.2	novel	0.00	0	2	0	2	n	0.86	6	1	6	1	y	1.00	1	0	1	0	n	0.75	3	1	3	1	y	0.83	5	1	5	1	y	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.60	3	2	3	2	y	0.67	2	1	2	1	y	1.00	5	0	5	0	y	0.67	2	1	2	1	y	0.67	4	2	4	2	y	ENSMUSG00000090081.2	Gm16587	chr1	lncRNA	predicted gene 16587
novel_NIR_445	chr1	163976701	163977007	-	163976701	163976889	A5SS	ENSMUST00000133341.3	novel	0.21	10	37	10	37	y	0.09	5	51	5	51	n	0.02	1	44	1	44	n	0.00	0	50	0	50	n	0.08	5	61	5	61	n	0.08	3	36	3	36	n	0.05	4	70	4	70	n	0.09	5	51	5	51	n	0.08	5	55	5	55	n	0.06	6	97	6	97	n	0.04	3	64	3	64	n	0.05	4	78	4	78	n	ENSMUSG00000086593.3	Gm16548	chr1	lncRNA	predicted gene 16548
novel_NIR_446	chr1	163977213	163978973	-	163977213	163979428	A5SS	ENSMUST00000133341.3	novel	0.17	7	33	7	33	y	0.05	2	37	2	37	n	0.03	1	38	1	38	n	0.20	7	28	7	28	y	0.30	16	37	16	37	y	0.16	3	16	3	16	y	0.11	5	41	5	41	n	0.09	3	29	3	29	n	0.12	4	30	4	30	n	0.11	4	32	4	32	n	0.13	6	41	6	41	n	0.35	18	34	18	34	y	ENSMUSG00000086593.3	Gm16548	chr1	lncRNA	predicted gene 16548
novel_NIR_447	chr1	163977213	163979008	-	163977213	163979428	A5SS	ENSMUST00000133341.3	novel	0.21	9	33	9	33	y	0.20	9	37	9	37	y	0.00	0	38	0	38	n	0.26	10	28	10	28	y	0.31	17	37	17	37	y	0.27	6	16	6	16	y	0.21	11	41	11	41	y	0.33	14	29	14	29	y	0.44	24	30	24	30	y	0.42	23	32	23	32	y	0.32	19	41	19	41	y	0.42	25	34	25	34	y	ENSMUSG00000086593.3	Gm16548	chr1	lncRNA	predicted gene 16548
novel_NIR_448	chr1	164077025	164080233	+	164077025	164088361	A3SS	ENSMUST00000169394.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000040918.13	Slc19a2	chr1	protein_coding	solute carrier family 19 (thiamine transporter), member 2
novel_NIR_449	chr1	164077025	164081747	+	164077025	164088361	A3SS	ENSMUST00000169394.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000040918.13	Slc19a2	chr1	protein_coding	solute carrier family 19 (thiamine transporter), member 2
novel_NIR_450	chr1	164077025	164084389	+	164077025	164088361	A3SS	ENSMUST00000169394.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.86	6	1	6	1	y	ENSMUSG00000040918.13	Slc19a2	chr1	protein_coding	solute carrier family 19 (thiamine transporter), member 2
novel_NIR_451	chr1	164130289	164130526	-	164130289	164131417	A5SS	ENSMUST00000124007.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	0.80	4	1	4	1	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026577.14	Blzf1	chr1	protein_coding	basic leucine zipper nuclear factor 1
novel_NIR_452	chr1	164130289	164130526	-	164130289	164131473	A5SS	ENSMUST00000027866.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	2	1	2	1	y	1.00	3	0	3	0	y	0.00	0	2	0	2	n	1.00	4	0	4	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026577.14	Blzf1	chr1	protein_coding	basic leucine zipper nuclear factor 1
novel_NIR_453	chr1	164130289	164130526	-	164130289	164134008	A5SS	ENSMUST00000120447.8	novel	0.00	0	22	0	22	n	0.00	0	6	0	6	n	0.00	0	40	0	40	n	0.09	2	20	2	20	n	0.10	3	27	3	27	n	0.00	0	22	0	22	n	0.18	4	18	4	18	y	0.00	0	19	0	19	n	0.00	0	15	0	15	n	0.00	0	17	0	17	n	0.00	0	19	0	19	n	0.00	0	15	0	15	n	ENSMUSG00000026577.14	Blzf1	chr1	protein_coding	basic leucine zipper nuclear factor 1
novel_NIR_454	chr1	164152116	164155862	+	164140507	164155862	A5SS	ENSMUST00000193808.6	novel	0.20	4	16	4	16	y	0.44	7	9	7	9	y	0.59	20	14	20	14	y	0.00	0	14	0	14	n	0.08	2	22	2	22	n	0.32	7	15	7	15	y	0.38	8	13	8	13	y	0.36	4	7	4	7	y	0.00	0	9	0	9	n	0.25	4	12	4	12	y	0.36	5	9	5	9	y	0.06	1	15	1	15	n	ENSMUSG00000026575.16	Nme7	chr1	protein_coding	NME/NM23 family member 7
novel_NIR_455	chr1	164175448	164199375	+	164175448	164175728	3pMXE	ENSMUST00000195474.6	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026575.16	Nme7	chr1	protein_coding	NME/NM23 family member 7
novel_NIR_456	chr1	164290406	164291244	+	164290406	164291257	A3SS	ENSMUST00000191839.2	novel	0.50	3	3	3	3	y	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.40	2	3	2	3	y	0.33	3	6	3	6	y	1.00	1	0	1	0	n	0.17	1	5	1	5	n	-	-	-	-	-	-	0.17	1	5	1	5	n	0.12	1	7	1	7	n	0.00	0	8	0	8	n	0.38	3	5	3	5	y	ENSMUSG00000104011.2	Gm32391	chr1	lncRNA	predicted gene, 32391
novel_NIR_457	chr1	164713303	164726968	-	164667199	164726968	A3SS	ENSMUST00000193955.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000103659.2	Gm32569	chr1	lncRNA	predicted gene, 32569
novel_NIR_458	chr1	165179645	165198692	-	165195074	165198692	3pMXE	ENSMUST00000195686.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.38	3	5	3	5	y	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	ENSMUSG00000026571.13	Dcaf6	chr1	protein_coding	DDB1 and CUL4 associated factor 6
novel_NIR_459	chr1	165227437	165247680	-	165227437;165239168	165239033;165247680	ES	ENSMUST00000027856.13	novel	0.04	1	23.5	1	25;22	n	0.10	3	27.0	3	25;29	n	0.05	2	40.0	2	41;39	n	0.18	8	36.5	8	40;33	y	0.03	2	62.5	2	66;59	n	0.00	0	25.5	0	32;19	n	0.09	5	52.5	5	50;55	n	0.03	1	38.0	1	44;32	n	0.11	4	33.5	4	34;33	n	0.03	2	62.0	2	72;52	n	0.00	0	42.0	0	41;43	n	0.00	0	56.5	0	49;64	n	ENSMUSG00000026571.13	Dcaf6	chr1	protein_coding	DDB1 and CUL4 associated factor 6
novel_NIR_460	chr1	165289080	165305790	+	165289080	165305760	A3SS	ENSMUST00000193575.2	novel	1.00	3	0	3	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	0.80	4	1	4	1	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	ENSMUSG00000026568.7	Mpc2	chr1	protein_coding	mitochondrial pyruvate carrier 2
novel_NIR_461	chr1	165302563	165308472	+	165305874	165308472	A5SS&ES	ENSMUST00000193575.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026568.7	Mpc2	chr1	protein_coding	mitochondrial pyruvate carrier 2
novel_NIR_462	chr1	165305874	165307117	+	165305874	165308472	A3SS	ENSMUST00000193575.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026568.7	Mpc2	chr1	protein_coding	mitochondrial pyruvate carrier 2
novel_NIR_463	chr1	165429418	165432179	-	165421246	165432179	A3SS	ENSMUST00000068705.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000026566.16	Mpzl1	chr1	protein_coding	myelin protein zero-like 1
novel_NIR_464	chr1	165429418	165432179	-	165429424	165432179	A3SS	ENSMUST00000111435.9	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000026566.16	Mpzl1	chr1	protein_coding	myelin protein zero-like 1
novel_NIR_465	chr1	165429418	165432179	-	165429433	165432179	A3SS	ENSMUST00000193023.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026566.16	Mpzl1	chr1	protein_coding	myelin protein zero-like 1
novel_NIR_466	chr1	165596014	165597382	+	165592323	165597382	A5SS	ENSMUST00000140769.2	novel	0.29	2	5	2	5	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	0.54	7	6	7	6	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.50	7	7	7	7	y	0.00	0	3	0	3	n	0.60	6	4	6	4	y	ENSMUSG00000040713.13	Creg1	chr1	protein_coding	cellular repressor of E1A-stimulated genes 1
novel_NIR_467	chr1	165596014	165597382	+	165597089	165597382	5pMXE	ENSMUST00000040298.5	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.78	7	2	7	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.88	7	1	7	1	y	0.00	0	3	0	3	n	0.86	6	1	6	1	y	ENSMUSG00000040713.13	Creg1	chr1	protein_coding	cellular repressor of E1A-stimulated genes 1
novel_NIR_468	chr1	16576006	16579566	-	16510682	16579566	A3SS	ENSMUST00000151888.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025920.20	Stau2	chr1	protein_coding	staufen double-stranded RNA binding protein 2
novel_NIR_469	chr1	16576006	16579566	-	16533418	16579566	A3SS	ENSMUST00000162627.8	novel	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	ENSMUSG00000025920.20	Stau2	chr1	protein_coding	staufen double-stranded RNA binding protein 2
novel_NIR_470	chr1	16576006	16579566	-	16556374	16579566	A3SS	ENSMUST00000162751.8	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.67	2	1	2	1	y	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	ENSMUSG00000025920.20	Stau2	chr1	protein_coding	staufen double-stranded RNA binding protein 2
novel_NIR_471	chr1	16576006	16579566	-	16558193	16579566	A3SS	ENSMUST00000149320.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025920.20	Stau2	chr1	protein_coding	staufen double-stranded RNA binding protein 2
novel_NIR_472	chr1	166098187	166099779	+	166098187	166118985	A3SS	ENSMUST00000111416.7	novel	0.40	4	6	4	6	y	0.22	5	18	5	18	y	0.35	6	11	6	11	y	0.00	0	20	0	20	n	0.14	4	25	4	25	n	0.08	1	11	1	11	n	0.33	8	16	8	16	y	0.04	1	23	1	23	n	0.36	5	9	5	9	y	0.21	7	27	7	27	y	0.00	0	7	0	7	n	0.08	1	12	1	12	n	ENSMUSG00000040612.14	Ildr2	chr1	protein_coding	immunoglobulin-like domain containing receptor 2
novel_NIR_473	chr1	166098187	166099779	+	166098187	166122160	A3SS	ENSMUST00000192638.6	novel	0.33	4	8	4	8	y	0.38	5	8	5	8	y	0.25	6	18	6	18	y	0.00	0	20	0	20	n	0.14	4	24	4	24	n	0.07	1	14	1	14	n	0.32	8	17	8	17	y	0.04	1	25	1	25	n	0.31	5	11	5	11	y	0.37	7	12	7	12	y	0.00	0	11	0	11	n	0.09	1	10	1	10	n	ENSMUSG00000040612.14	Ildr2	chr1	protein_coding	immunoglobulin-like domain containing receptor 2
novel_NIR_474	chr1	166098187	166099779	+	166098187	166131071	A3SS	ENSMUST00000192732.6	novel	0.50	4	4	4	4	y	0.42	5	7	5	7	y	0.60	6	4	6	4	y	0.00	0	3	0	3	n	0.31	4	9	4	9	y	0.14	1	6	1	6	n	0.67	8	4	8	4	y	0.11	1	8	1	8	n	0.71	5	2	5	2	y	0.44	7	9	7	9	y	0.00	0	4	0	4	n	0.17	1	5	1	5	n	ENSMUSG00000040612.14	Ildr2	chr1	protein_coding	immunoglobulin-like domain containing receptor 2
novel_NIR_475	chr1	166098187	166099779	+	166098187	166138329	A3SS	ENSMUST00000192426.6	novel	1.00	4	0	4	0	y	0.83	5	1	5	1	y	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	8	0	8	0	y	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000040612.14	Ildr2	chr1	protein_coding	immunoglobulin-like domain containing receptor 2
novel_NIR_476	chr1	166098187	166114260	+	166098187	166122160	A3SS	ENSMUST00000192638.6	novel	0.11	1	8	1	8	n	0.00	0	8	0	8	n	0.00	0	18	0	18	n	0.00	0	20	0	20	n	0.04	1	24	1	24	n	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.00	0	25	0	25	n	0.00	0	11	0	11	n	0.08	1	12	1	12	n	0.00	0	11	0	11	n	0.17	2	10	2	10	y	ENSMUSG00000040612.14	Ildr2	chr1	protein_coding	immunoglobulin-like domain containing receptor 2
novel_NIR_477	chr1	166098187	166114260	+	166098187	166131071	A3SS	ENSMUST00000192732.6	novel	0.20	1	4	1	4	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.10	1	9	1	9	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.10	1	9	1	9	n	0.00	0	4	0	4	n	0.29	2	5	2	5	y	ENSMUSG00000040612.14	Ildr2	chr1	protein_coding	immunoglobulin-like domain containing receptor 2
novel_NIR_478	chr1	166098187	166114260	+	166098187	166138329	A3SS	ENSMUST00000192426.6	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000040612.14	Ildr2	chr1	protein_coding	immunoglobulin-like domain containing receptor 2
novel_NIR_479	chr1	166098187	166123321	+	166098187	166131071	A3SS	ENSMUST00000192732.6	novel	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.11	1	8	1	8	n	0.00	0	2	0	2	n	0.18	2	9	2	9	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	ENSMUSG00000040612.14	Ildr2	chr1	protein_coding	immunoglobulin-like domain containing receptor 2
novel_NIR_480	chr1	166098187	166123321	+	166098187	166138329	A3SS	ENSMUST00000192426.6	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040612.14	Ildr2	chr1	protein_coding	immunoglobulin-like domain containing receptor 2
novel_NIR_481	chr1	166119041	166122162	+	166119041	166131071	A3SS	ENSMUST00000193860.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040612.14	Ildr2	chr1	protein_coding	immunoglobulin-like domain containing receptor 2
novel_NIR_482	chr1	167065217	167098627	-	167065217	167070662	5pMXE	ENSMUST00000027839.14	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	9	0	9	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026558.14	Uck2	chr1	protein_coding	uridine-cytidine kinase 2
novel_NIR_483	chr1	167065217	167098627	-	167065217	167092270	A5SS&ES	ENSMUST00000193579.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	9	0	9	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026558.14	Uck2	chr1	protein_coding	uridine-cytidine kinase 2
novel_NIR_484	chr1	167065217	167098627	-	167065217	167107693	A5SS	ENSMUST00000191745.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	9	0	9	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026558.14	Uck2	chr1	protein_coding	uridine-cytidine kinase 2
novel_NIR_485	chr1	167065217	167098627	-	167065217	167112109	A5SS	ENSMUST00000192269.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	9	0	9	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026558.14	Uck2	chr1	protein_coding	uridine-cytidine kinase 2
novel_NIR_486	chr1	167065217	167099231	-	167065217	167070662	5pMXE	ENSMUST00000027839.14	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026558.14	Uck2	chr1	protein_coding	uridine-cytidine kinase 2
novel_NIR_487	chr1	167065217	167099231	-	167065217	167092270	A5SS&ES	ENSMUST00000193579.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026558.14	Uck2	chr1	protein_coding	uridine-cytidine kinase 2
novel_NIR_488	chr1	167065217	167099231	-	167065217	167107693	A5SS	ENSMUST00000191745.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026558.14	Uck2	chr1	protein_coding	uridine-cytidine kinase 2
novel_NIR_489	chr1	167065217	167099231	-	167065217	167112109	A5SS	ENSMUST00000192269.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026558.14	Uck2	chr1	protein_coding	uridine-cytidine kinase 2
novel_NIR_490	chr1	16713702	16718179	-	16717277	16718179	3pMXE	ENSMUST00000188987.7	novel	0.44	4	5	4	5	y	0.84	16	3	16	3	y	0.43	10	13	10	13	y	0.62	5	3	5	3	y	0.75	3	1	3	1	y	0.00	0	3	0	3	n	0.36	4	7	4	7	y	0.60	3	2	3	2	y	0.89	8	1	8	1	y	0.67	8	4	8	4	y	0.71	10	4	10	4	y	0.88	14	2	14	2	y	ENSMUSG00000079658.10	Eloc	chr1	protein_coding	elongin C
novel_NIR_491	chr1	16716053	16717013	-	16716053	16717212	A5SS	ENSMUST00000187910.7	novel	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000079658.10	Eloc	chr1	protein_coding	elongin C
novel_NIR_492	chr1	167180234	167181999	+	167180234	167181486	A3SS&ES	ENSMUST00000194843.6	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026687.15	Aldh9a1	chr1	protein_coding	aldehyde dehydrogenase 9, subfamily A1
novel_NIR_493	chr1	16718231	16719984	-	16718231	16726520	A5SS	ENSMUST00000185771.7	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.40	2	3	2	3	y	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.00	0	7	0	7	n	ENSMUSG00000079658.10	Eloc	chr1	protein_coding	elongin C
novel_NIR_494	chr1	16718231	16719984	-	16718231	16727136	A5SS	ENSMUST00000186948.7	novel	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.22	2	7	2	7	y	0.06	1	17	1	17	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	19	0	19	n	0.12	1	7	1	7	n	0.00	0	19	0	19	n	ENSMUSG00000079658.10	Eloc	chr1	protein_coding	elongin C
novel_NIR_495	chr1	16718231	16726606	-	16718231	16726520	A5SS	ENSMUST00000185771.7	novel	0.75	3	1	3	1	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.40	2	3	2	3	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.50	2	2	2	2	y	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	ENSMUSG00000079658.10	Eloc	chr1	protein_coding	elongin C
novel_NIR_496	chr1	16718231	16726606	-	16718231	16727136	A5SS	ENSMUST00000186948.7	novel	0.33	3	6	3	6	y	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.22	2	7	2	7	y	0.00	0	17	0	17	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.15	2	11	2	11	y	0.00	0	11	0	11	n	0.00	0	19	0	19	n	0.00	0	7	0	7	n	0.00	0	19	0	19	n	ENSMUSG00000079658.10	Eloc	chr1	protein_coding	elongin C
novel_NIR_497	chr1	16718231	16726840	-	16718231	16726520	A5SS&ES	ENSMUST00000185771.7	novel	0.67	2	1	2	1	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.40	2	3	2	3	y	0.00	0	4	0	4	n	0.50	3	3	3	3	y	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.00	0	7	0	7	n	ENSMUSG00000079658.10	Eloc	chr1	protein_coding	elongin C
novel_NIR_498	chr1	16718231	16726840	-	16718231	16727136	A5SS	ENSMUST00000186948.7	novel	0.25	2	6	2	6	y	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.22	2	7	2	7	y	0.00	0	17	0	17	n	0.27	3	8	3	8	y	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	19	0	19	n	0.12	1	7	1	7	n	0.00	0	19	0	19	n	ENSMUSG00000079658.10	Eloc	chr1	protein_coding	elongin C
novel_NIR_499	chr1	16718231	16727086	-	16718231	16726520	A5SS&ES	ENSMUST00000185771.7	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.38	3	5	3	5	y	0.00	0	3	0	3	n	0.00	0	7	0	7	n	ENSMUSG00000079658.10	Eloc	chr1	protein_coding	elongin C
novel_NIR_500	chr1	16736091	16737892	+	16735596	16737892	A5SS	ENSMUST00000177532.2	novel	1.00	5	0	5	0	y	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	7	0	7	0	y	0.40	2	3	2	3	y	-	-	-	-	-	-	ENSMUSG00000025940.7	Tmem70	chr1	protein_coding	transmembrane protein 70
novel_NIR_501	chr1	167452641	167452844	+	167452641	167454861	A3SS	ENSMUST00000015987.10	novel	0.45	5	6	5	6	y	0.10	2	18	2	18	n	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.33	3	6	3	6	y	0.67	2	1	2	1	y	0.08	1	12	1	12	n	0.08	1	11	1	11	n	0.08	1	11	1	11	n	0.13	4	27	4	27	n	0.00	0	11	0	11	n	0.20	2	8	2	8	y	ENSMUSG00000015843.11	Rxrg	chr1	protein_coding	retinoid X receptor gamma
novel_NIR_502	chr1	16758427	16758561	+	16758393	16758561	A5SS	ENSMUST00000191260.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025779.11	Ly96	chr1	protein_coding	lymphocyte antigen 96
novel_NIR_503	chr1	16761997	16771059	+	16761997	16771073	A3SS	ENSMUST00000190366.2	novel	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025779.11	Ly96	chr1	protein_coding	lymphocyte antigen 96
novel_NIR_504	chr1	169797144	169799351	+	169797144;169798371	169798019;169799351	ES	ENSMUST00000180638.3	novel	0.00	0	5.0	0	6;4	n	0.29	1	2.5	1	3;2	n	0.11	1	8.0	1	9;7	n	0.38	3	5.0	3	3;7	y	0.18	2	9.0	2	10;8	y	0.00	0	15.5	0	19;12	n	0.24	4	13.0	4	13;13	y	0.19	2	8.5	2	7;10	y	0.13	1	6.5	1	9;4	n	0.41	7	10.0	7	13;7	y	0.10	1	9.0	1	9;9	n	0.14	1	6.0	1	11;1	n	ENSMUSG00000097503.3	3110045C21Rik	chr1	lncRNA	RIKEN cDNA 3110045C21 gene
novel_NIR_505	chr1	169797144	169799351	+	169797144;169798371	169798039;169799351	ES	ENSMUST00000193930.2	novel	0.00	0	2.0	0	0;4	n	0.50	1	1.0	1	0;2	n	0.20	1	4.0	1	1;7	n	0.46	3	3.5	3	0;7	y	0.33	2	4.0	2	0;8	y	0.00	0	6.5	0	1;12	n	0.36	4	7.0	4	1;13	y	0.29	2	5.0	2	0;10	y	0.33	1	2.0	1	0;4	n	0.67	7	3.5	7	0;7	y	0.18	1	4.5	1	0;9	n	0.67	1	0.5	1	0;1	n	ENSMUSG00000097503.3	3110045C21Rik	chr1	lncRNA	RIKEN cDNA 3110045C21 gene
novel_NIR_506	chr1	169986495	169994195	-	169989009	169994195	3pMXE	ENSMUST00000191797.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000026670.16	Uap1	chr1	protein_coding	UDP-N-acetylglucosamine pyrophosphorylase 1
novel_NIR_507	chr1	170027582	170032581	-	170027582	170034683	A5SS	ENSMUST00000123399.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.67	2	1	2	1	y	0.00	0	4	0	4	n	ENSMUSG00000026667.15	Uhmk1	chr1	protein_coding	U2AF homology motif (UHM) kinase 1
novel_NIR_508	chr1	170615026	170616177	-	170615029	170616177	A3SS	ENSMUST00000027974.7	novel	0.18	10	47	10	47	y	0.06	2	31	2	31	n	0.15	17	94	17	94	y	0.13	9	60	9	60	n	0.25	28	86	28	86	y	0.13	7	46	7	46	n	0.14	12	73	12	73	n	0.17	8	40	8	40	y	0.00	0	32	0	32	n	0.22	17	61	17	61	y	0.15	8	44	8	44	y	0.15	12	70	12	70	y	ENSMUSG00000026663.7	Atf6	chr1	protein_coding	activating transcription factor 6
novel_NIR_509	chr1	17067113	17067688	-	17047792	17067688	A3SS	ENSMUST00000186024.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000042686.6	Jph1	chr1	protein_coding	junctophilin 1
novel_NIR_510	chr1	17067264	17067688	-	17047792	17067688	A3SS	ENSMUST00000186024.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000042686.6	Jph1	chr1	protein_coding	junctophilin 1
novel_NIR_511	chr1	170707311	170707699	-	170702139	170707699	A3SS	ENSMUST00000171447.8	novel	1.00	9	0	9	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	1	0	1	0	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026659.14	Dusp12	chr1	protein_coding	dual specificity phosphatase 12
novel_NIR_512	chr1	170707795	170708161	-	170707795	170708484	A5SS	ENSMUST00000170420.8	novel	0.33	4	8	4	8	y	0.43	3	4	3	4	y	0.50	3	3	3	3	y	0.29	2	5	2	5	y	0.14	2	12	2	12	n	0.50	2	2	2	2	y	0.33	3	6	3	6	y	0.20	2	8	2	8	y	0.25	1	3	1	3	n	0.29	4	10	4	10	y	0.20	2	8	2	8	y	0.27	3	8	3	8	y	ENSMUSG00000026659.14	Dusp12	chr1	protein_coding	dual specificity phosphatase 12
novel_NIR_513	chr1	170707795	170712636	-	170707795;170708597	170708484;170712636	ES	ENSMUST00000046476.13	novel	0.06	1	17.0	1	8;26	n	0.00	0	16.0	0	4;28	n	0.00	0	15.5	0	3;28	n	0.00	0	17.0	0	5;29	n	0.04	1	26.0	1	12;40	n	0.17	2	9.5	2	2;17	y	0.00	0	20.0	0	6;34	n	0.00	0	18.5	0	8;29	n	0.00	0	15.0	0	3;27	n	0.00	0	19.0	0	10;28	n	0.00	0	15.0	0	8;22	n	0.00	0	21.0	0	8;34	n	ENSMUSG00000026659.14	Dusp12	chr1	protein_coding	dual specificity phosphatase 12
novel_NIR_514	chr1	170707795	170712636	-	170707795;170708610	170708484;170712636	ES	ENSMUST00000170420.8	novel	0.08	1	11.5	1	8;15	n	0.00	0	8.0	0	4;12	n	0.00	0	5.5	0	3;8	n	0.00	0	9.5	0	5;14	n	0.05	1	17.5	1	12;23	n	0.24	2	6.5	2	2;11	y	0.00	0	12.0	0	6;18	n	0.00	0	12.0	0	8;16	n	0.00	0	9.0	0	3;15	n	0.00	0	11.0	0	10;12	n	0.00	0	10.0	0	8;12	n	0.00	0	20.0	0	8;32	n	ENSMUSG00000026659.14	Dusp12	chr1	protein_coding	dual specificity phosphatase 12
novel_NIR_515	chr1	170707795	170712636	-	170708610	170712636	A3SS	ENSMUST00000163252.8	novel	0.06	1	15	1	15	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.04	1	23	1	23	n	0.15	2	11	2	11	y	0.00	0	18	0	18	n	0.00	0	16	0	16	n	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	32	0	32	n	ENSMUSG00000026659.14	Dusp12	chr1	protein_coding	dual specificity phosphatase 12
novel_NIR_516	chr1	170708597	170711727	-	170708597	170712477	A5SS	ENSMUST00000172042.2	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	2	4	2	4	y	0.00	0	6	0	6	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	4	2	4	2	y	0.14	1	6	1	6	n	0.00	0	3	0	3	n	ENSMUSG00000026659.14	Dusp12	chr1	protein_coding	dual specificity phosphatase 12
novel_NIR_517	chr1	170708610	170712477	-	170708597	170712477	A3SS	ENSMUST00000172042.2	novel	0.80	4	1	4	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.43	3	4	3	4	y	0.40	4	6	4	6	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.33	3	6	3	6	y	0.40	2	3	2	3	y	ENSMUSG00000026659.14	Dusp12	chr1	protein_coding	dual specificity phosphatase 12
novel_NIR_518	chr1	170708610	170712477	-	170708610	170712636	A5SS	ENSMUST00000170420.8	novel	0.21	4	15	4	15	y	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.18	3	14	3	14	y	0.15	4	23	4	23	y	0.08	1	11	1	11	n	0.10	2	18	2	18	n	0.16	3	16	3	16	y	0.00	0	15	0	15	n	0.14	2	12	2	12	n	0.20	3	12	3	12	y	0.06	2	32	2	32	n	ENSMUSG00000026659.14	Dusp12	chr1	protein_coding	dual specificity phosphatase 12
novel_NIR_519	chr1	170803914	170804206	-	170803914	170804006	5pMXE	ENSMUST00000159969.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000026656.16	Fcgr2b	chr1	protein_coding	Fc receptor, IgG, low affinity IIb
novel_NIR_520	chr1	170807451	170811303	+	170809630	170811303	5pMXE	ENSMUST00000194503.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000104340.2	Gm10522	chr1	lncRNA	predicted gene 10522
novel_NIR_521	chr1	170941774	170952603	+	170941665	170952603	A5SS	ENSMUST00000129651.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.75	3	1	3	1	y	0.00	0	1	0	1	n	0.33	2	4	2	4	y	0.33	2	4	2	4	y	0.17	1	5	1	5	n	ENSMUSG00000026649.15	Cfap126	chr1	protein_coding	cilia and flagella associated protein 126
novel_NIR_522	chr1	170941774	170952603	+	170950762	170952603	A5SS&ES	ENSMUST00000151340.8	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.60	3	2	3	2	y	0.00	0	10	0	10	n	0.40	2	3	2	3	y	0.40	2	3	2	3	y	0.50	1	1	1	1	n	ENSMUSG00000026649.15	Cfap126	chr1	protein_coding	cilia and flagella associated protein 126
novel_NIR_523	chr1	170973381	170977672	-	170973381	170978049	A5SS	ENSMUST00000155798.2	novel	0.10	1	9	1	9	n	0.00	0	12	0	12	n	0.33	2	4	2	4	y	0.08	1	12	1	12	n	0.00	0	14	0	14	n	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.17	1	5	1	5	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.17	1	5	1	5	n	ENSMUSG00000058076.13	Sdhc	chr1	protein_coding	succinate dehydrogenase complex, subunit C, integral membrane protein
novel_NIR_524	chr1	170979967	170983122	+	170979505	170983122	A5SS	ENSMUST00000070758.10	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000056569.12	Mpz	chr1	protein_coding	myelin protein zero
novel_NIR_525	chr1	171041742	171041915	+	171041742	171043948	A3SS	ENSMUST00000155126.8	novel	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	20	0	20	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.28	5	13	5	13	y	0.57	4	3	4	3	y	0.00	0	7	0	7	n	ENSMUSG00000005677.15	Nr1i3	chr1	protein_coding	nuclear receptor subfamily 1, group I, member 3
novel_NIR_526	chr1	171041742	171042513	+	171041742	171043948	A3SS	ENSMUST00000155126.8	novel	0.29	2	5	2	5	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.05	1	20	1	20	n	0.00	0	7	0	7	n	0.08	1	11	1	11	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.25	1	3	1	3	n	0.00	0	7	0	7	n	ENSMUSG00000005677.15	Nr1i3	chr1	protein_coding	nuclear receptor subfamily 1, group I, member 3
novel_NIR_527	chr1	171044813	171044886	+	171044790	171044886	A5SS	ENSMUST00000111328.8	novel	0.00	0	38	0	38	n	0.00	0	30	0	30	n	0.00	0	13	0	13	n	0.00	0	35	0	35	n	0.00	0	57	0	57	n	0.13	2	13	2	13	n	0.09	7	72	7	72	n	0.00	0	37	0	37	n	0.00	0	40	0	40	n	0.00	0	67	0	67	n	0.15	9	52	9	52	y	0.00	0	26	0	26	n	ENSMUSG00000005677.15	Nr1i3	chr1	protein_coding	nuclear receptor subfamily 1, group I, member 3
novel_NIR_528	chr1	171044999	171045199	+	171044999	171046158	A3SS	ENSMUST00000075469.12	novel	0.26	23	64	23	64	y	0.19	14	61	14	61	n	0.23	7	23	7	23	n	0.39	37	59	37	59	n	0.26	37	107	37	107	n	0.18	4	18	4	18	y	0.25	40	123	40	123	n	0.29	12	29	12	29	n	0.21	14	52	14	52	n	0.33	52	108	52	108	n	0.26	37	103	37	103	n	0.35	17	31	17	31	n	ENSMUSG00000005677.15	Nr1i3	chr1	protein_coding	nuclear receptor subfamily 1, group I, member 3
novel_NIR_529	chr1	171044999;171045299	171045199;171046158	+	171044999	171046158	cassetteExon	ENSMUST00000075469.12	novel	0.15	11.5	64	23;0	64	n	0.10	7.0	61	14;0	61	n	0.13	3.5	23	7;0	23	n	0.24	18.5	59	37;0	59	n	0.15	18.5	107	37;0	107	n	0.10	2.0	18	4;0	18	n	0.15	21.0	123	40;2	123	y	0.17	6.0	29	12;0	29	n	0.12	7.0	52	14;0	52	n	0.19	26.0	108	52;0	108	n	0.15	18.5	103	37;0	103	n	0.22	8.5	31	17;0	31	n	ENSMUSG00000005677.15	Nr1i3	chr1	protein_coding	nuclear receptor subfamily 1, group I, member 3
novel_NIR_530	chr1	171044999;171045342	171045199;171046158	+	171044999	171046158	cassetteExon	ENSMUST00000075469.12	novel	0.15	11.5	64	23;0	64	n	0.10	7.0	61	14;0	61	n	0.13	3.5	23	7;0	23	n	0.24	18.5	59	37;0	59	n	0.16	20.0	107	37;3	107	y	0.10	2.0	18	4;0	18	n	0.14	20.0	123	40;0	123	n	0.17	6.0	29	12;0	29	n	0.12	7.0	52	14;0	52	n	0.19	26.0	108	52;0	108	n	0.15	18.5	103	37;0	103	n	0.22	8.5	31	17;0	31	n	ENSMUSG00000005677.15	Nr1i3	chr1	protein_coding	nuclear receptor subfamily 1, group I, member 3
novel_NIR_531	chr1	171044999;171045413	171045199;171046158	+	171044999	171046158	cassetteExon	ENSMUST00000075469.12	novel	0.15	11.5	64	23;0	64	n	0.12	8.5	61	14;3	61	n	0.16	4.5	23	7;2	23	y	0.25	20.0	59	37;3	59	y	0.15	18.5	107	37;0	107	n	0.10	2.0	18	4;0	18	n	0.16	24.0	123	40;8	123	y	0.21	7.5	29	12;3	29	y	0.13	7.5	52	14;1	52	n	0.22	30.0	108	52;8	108	y	0.16	19.5	103	37;2	103	y	0.26	11.0	31	17;5	31	y	ENSMUSG00000005677.15	Nr1i3	chr1	protein_coding	nuclear receptor subfamily 1, group I, member 3
novel_NIR_532	chr1	171047966	171048116	-	171047992	171048116	A3SS	ENSMUST00000005817.9	novel	0.00	0	66	0	66	n	0.02	1	57	1	57	n	0.02	1	56	1	56	n	0.00	0	58	0	58	n	0.14	8	49	8	49	n	0.00	0	52	0	52	n	0.00	0	78	0	78	n	0.00	0	42	0	42	n	0.04	2	50	2	50	n	0.00	0	73	0	73	n	0.20	13	53	13	53	y	0.01	1	81	1	81	n	ENSMUSG00000005674.10	Tomm40l	chr1	protein_coding	translocase of outer mitochondrial membrane 40-like
novel_NIR_533	chr1	171048221	171048319	-	171048221	171048737	A5SS	ENSMUST00000111326.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000005674.10	Tomm40l	chr1	protein_coding	translocase of outer mitochondrial membrane 40-like
novel_NIR_534	chr1	171048221	171048319	-	171048221	171049473	A5SS	ENSMUST00000143405.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000005674.10	Tomm40l	chr1	protein_coding	translocase of outer mitochondrial membrane 40-like
novel_NIR_535	chr1	171066963	171068005	-	171066963	171067597	5pMXE	ENSMUST00000131286.3	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.75	3	1	3	1	y	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	ENSMUSG00000013593.13	Ndufs2	chr1	protein_coding	NADH:ubiquinone oxidoreductase core subunit S2
novel_NIR_536	chr1	171066963	171068508	-	171066963	171067597	5pMXE	ENSMUST00000131286.3	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.78	7	2	7	2	y	ENSMUSG00000013593.13	Ndufs2	chr1	protein_coding	NADH:ubiquinone oxidoreductase core subunit S2
novel_NIR_537	chr1	171066963;171067152	171067061;171067597	-	171066963	171067597	cassetteExon	ENSMUST00000131286.3	novel	-	-	-	-	-	-	1.00	0.5	0	1;0	0	n	0.76	6.5	2	7;6	2	y	1.00	0.5	0	0;1	0	n	0.67	2.0	1	2;2	1	y	0.80	4.0	1	7;1	1	n	0.56	9.0	7	16;2	7	y	0.78	3.5	1	7;0	1	n	-	-	-	-	-	-	0.00	0.0	1	0;0	1	n	-	-	-	-	-	-	0.00	0.0	2	0;0	2	n	ENSMUSG00000013593.13	Ndufs2	chr1	protein_coding	NADH:ubiquinone oxidoreductase core subunit S2
novel_NIR_538	chr1	171098943	171099300	+	171098943	171099277	A3SS	ENSMUST00000064272.10	novel	0.06	1	17	1	17	n	0.00	0	11	0	11	n	0.00	0	22	0	22	n	0.00	0	14	0	14	n	0.00	0	27	0	27	n	0.00	0	10	0	10	n	0.00	0	38	0	38	n	0.33	3	6	3	6	y	0.00	0	16	0	16	n	0.00	0	34	0	34	n	0.00	0	13	0	13	n	0.06	1	17	1	17	n	ENSMUSG00000052423.16	B4galt3	chr1	protein_coding	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3
novel_NIR_539	chr1	171098943	171099300	+	171098943	171099398	A3SS	ENSMUST00000151863.8	novel	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.75	3	1	3	1	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	ENSMUSG00000052423.16	B4galt3	chr1	protein_coding	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3
novel_NIR_540	chr1	171098943	171099300	+	171098943	171099480	A3SS	ENSMUST00000126699.4	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000052423.16	B4galt3	chr1	protein_coding	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3
novel_NIR_541	chr1	171107834	171107962	-	171107829	171107962	A3SS	ENSMUST00000073120.11	novel	0.21	4	15	4	15	y	0.00	0	15	0	15	n	0.00	0	30	0	30	n	0.00	0	30	0	30	n	0.00	0	28	0	28	n	0.00	0	25	0	25	n	0.04	1	25	1	25	n	0.00	0	25	0	25	n	0.09	2	21	2	21	n	0.00	0	45	0	45	n	0.06	2	31	2	31	n	0.03	1	30	1	30	n	ENSMUSG00000062729.13	Ppox	chr1	protein_coding	protoporphyrinogen oxidase
novel_NIR_542	chr1	171107834	171107962	-	171107862	171107962	A3SS	ENSMUST00000192956.3	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000062729.13	Ppox	chr1	protein_coding	protoporphyrinogen oxidase
novel_NIR_543	chr1	171107845	171107962	-	171107829	171107962	A3SS	ENSMUST00000073120.11	novel	0.06	1	15	1	15	n	0.00	0	15	0	15	n	0.12	4	30	4	30	n	0.09	3	30	3	30	n	0.07	2	28	2	28	n	0.00	0	25	0	25	n	0.00	0	25	0	25	n	0.00	0	25	0	25	n	0.00	0	21	0	21	n	0.10	5	45	5	45	n	0.16	6	31	6	31	y	0.00	0	30	0	30	n	ENSMUSG00000062729.13	Ppox	chr1	protein_coding	protoporphyrinogen oxidase
novel_NIR_544	chr1	171107845	171107962	-	171107862	171107962	A3SS	ENSMUST00000192956.3	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	0.75	3	1	3	1	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.83	5	1	5	1	y	1.00	6	0	6	0	y	-	-	-	-	-	-	ENSMUSG00000062729.13	Ppox	chr1	protein_coding	protoporphyrinogen oxidase
novel_NIR_545	chr1	171157094	171158825	+	171157094	171158802	A3SS	ENSMUST00000111299.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000013973.13	Dedd	chr1	protein_coding	death effector domain-containing
novel_NIR_546	chr1	171170332	171171006	-	171166205	171171006	A3SS	ENSMUST00000111296.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000013997.11	Nit1	chr1	protein_coding	nitrilase 1
novel_NIR_547	chr1	171170332	171171006	-	171168691	171171006	A3SS	ENSMUST00000146428.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000013997.11	Nit1	chr1	protein_coding	nitrilase 1
novel_NIR_548	chr1	171172550	171173136	-	171172880	171173136	A3SS&ES	ENSMUST00000148339.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.80	4	1	4	1	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000013997.11	Nit1	chr1	protein_coding	nitrilase 1
novel_NIR_549	chr1	171172568	171172780	-	171172568	171172759	A5SS	ENSMUST00000156856.8	novel	0.00	0	20	0	20	n	0.00	0	15	0	15	n	0.00	0	22	0	22	n	0.00	0	14	0	14	n	0.00	0	28	0	28	n	0.00	0	10	0	10	n	0.00	0	31	0	31	n	0.18	2	9	2	9	y	0.00	0	24	0	24	n	0.07	3	37	3	37	n	0.00	0	11	0	11	n	0.09	3	30	3	30	n	ENSMUSG00000013997.11	Nit1	chr1	protein_coding	nitrilase 1
novel_NIR_550	chr1	171172577	171184098	+	171173354	171184098	5pMXE	ENSMUST00000135941.8	novel	0.32	36	78	36	78	y	0.29	24	58	24	58	y	0.25	20	61	20	61	y	0.41	41	60	41	60	y	0.25	34	104	34	104	y	0.28	19	50	19	50	y	0.29	40	96	40	96	y	0.27	15	41	15	41	y	0.27	26	72	26	72	y	0.31	34	75	34	75	y	0.33	43	86	43	86	y	0.34	35	67	35	67	y	ENSMUSG00000006412.11	Pfdn2	chr1	protein_coding	prefoldin 2
novel_NIR_551	chr1	171172612	171184098	+	171173354	171184098	5pMXE	ENSMUST00000135941.8	novel	0.34	41	78	41	78	y	0.43	44	58	44	58	y	0.26	21	61	21	61	y	0.45	50	60	50	60	y	0.32	49	104	49	104	y	0.34	26	50	26	50	y	0.31	44	96	44	96	y	0.39	26	41	26	41	y	0.30	31	72	31	72	y	0.44	60	75	60	75	y	0.36	48	86	48	86	y	0.40	44	67	44	67	y	ENSMUSG00000006412.11	Pfdn2	chr1	protein_coding	prefoldin 2
novel_NIR_552	chr1	171184396	171185424	+	171184396	171185356	A3SS	ENSMUST00000006579.5	novel	1.00	13	0	13	0	y	-	-	-	-	-	-	0.71	5	2	5	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.75	3	1	3	1	y	1.00	11	0	11	0	y	1.00	5	0	5	0	y	0.87	13	2	13	2	y	-	-	-	-	-	-	ENSMUSG00000006412.11	Pfdn2	chr1	protein_coding	prefoldin 2
novel_NIR_553	chr1	171225145	171228128	+	171225145	171228124	A3SS	ENSMUST00000056449.9	novel	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	ENSMUSG00000048865.17	Arhgap30	chr1	protein_coding	Rho GTPase activating protein 30
novel_NIR_554	chr1	171231523	171231605	+	171231523	171231602	A3SS	ENSMUST00000056449.9	novel	0.00	0	6	0	6	n	0.25	2	6	2	6	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	ENSMUSG00000048865.17	Arhgap30	chr1	protein_coding	Rho GTPase activating protein 30
novel_NIR_555	chr1	171239430	171241941	+	171239008	171241941	A5SS	ENSMUST00000159207.8	novel	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.50	2	2	2	2	y	ENSMUSG00000026641.14	Usf1	chr1	protein_coding	upstream transcription factor 1
novel_NIR_556	chr1	171239430	171241941	+	171239430	171242005	A3SS	ENSMUST00000167546.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	ENSMUSG00000026641.14	Usf1	chr1	protein_coding	upstream transcription factor 1
novel_NIR_557	chr1	171679702	171699388	+	171679702	171700264	A3SS	ENSMUST00000155802.9	novel	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.22	2	7	2	7	y	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	ENSMUSG00000038147.15	Cd84	chr1	protein_coding	CD84 antigen
novel_NIR_558	chr1	171696075	171700264	+	171668270	171700264	A5SS	ENSMUST00000128189.3	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038147.15	Cd84	chr1	protein_coding	CD84 antigen
novel_NIR_559	chr1	171696075	171700264	+	171679702	171700264	A5SS	ENSMUST00000155802.9	novel	0.33	1	2	1	2	n	-	-	-	-	-	-	0.10	1	9	1	9	n	0.33	1	2	1	2	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.36	4	7	4	7	y	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	ENSMUSG00000038147.15	Cd84	chr1	protein_coding	CD84 antigen
novel_NIR_560	chr1	171931830	171932753	+	171932119	171932753	A5SS&ES	ENSMUST00000152403.2	novel	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026553.18	Copa	chr1	protein_coding	coatomer protein complex subunit alpha
novel_NIR_561	chr1	171954415	171956167	+	171954415	171957469	A3SS	ENSMUST00000111252.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000003464.14	Pex19	chr1	protein_coding	peroxisomal biogenesis factor 19
novel_NIR_562	chr1	171961611	171961826	+	171961611	171961754	A3SS	ENSMUST00000133081.2	novel	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	4	0	4	0	y	0.40	2	3	2	3	y	1.00	6	0	6	0	y	1.00	6	0	6	0	y	1.00	11	0	11	0	y	1.00	9	0	9	0	y	1.00	14	0	14	0	y	0.91	10	1	10	1	y	1.00	4	0	4	0	y	0.00	0	2	0	2	n	ENSMUSG00000003464.14	Pex19	chr1	protein_coding	peroxisomal biogenesis factor 19
novel_NIR_563	chr1	172021468	172022363	+	172021468	172024450	A3SS	ENSMUST00000191891.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000026554.16	Dcaf8	chr1	protein_coding	DDB1 and CUL4 associated factor 8
novel_NIR_564	chr1	172021468	172028070	+	172021468	172024450	3pMXE	ENSMUST00000191891.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026554.16	Dcaf8	chr1	protein_coding	DDB1 and CUL4 associated factor 8
novel_NIR_565	chr1	172028184	172034164	-	172032031	172034164	A3SS&ES	ENSMUST00000155109.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000013698.13	Pea15a	chr1	protein_coding	phosphoprotein enriched in astrocytes 15A
novel_NIR_566	chr1	172305045	172305737	+	172305045	172305627	A3SS	ENSMUST00000027830.5	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	17	0	17	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.17	2	10	2	10	y	0.00	0	12	0	12	n	0.00	0	9	0	9	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	2	0	2	n	ENSMUSG00000026548.5	Slamf9	chr1	protein_coding	SLAM family member 9
novel_NIR_567	chr1	172525767	172526013	+	172525767	172658850	A3SS	ENSMUST00000194251.2	novel	1.00	73	0	73	0	y	1.00	59	0	59	0	y	1.00	109	0	109	0	y	0.97	62	2	62	2	y	1.00	91	0	91	0	y	0.94	34	2	34	2	y	1.00	75	0	75	0	y	1.00	35	0	35	0	y	1.00	39	0	39	0	y	1.00	59	0	59	0	y	1.00	28	0	28	0	y	1.00	52	0	52	0	y	ENSMUSG00000037942.6	Crp	chr1	protein_coding	C-reactive protein, pentraxin-related
novel_NIR_568	chr1	172525767	172558973	+	172525767	172658850	A3SS	ENSMUST00000194251.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037942.6	Crp	chr1	protein_coding	C-reactive protein, pentraxin-related
novel_NIR_569	chr1	172525767	172602517	+	172525767	172658850	A3SS	ENSMUST00000194251.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000037942.6	Crp	chr1	protein_coding	C-reactive protein, pentraxin-related
novel_NIR_570	chr1	172525767	172604054	+	172525767	172658850	A3SS	ENSMUST00000194251.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	n	ENSMUSG00000037942.6	Crp	chr1	protein_coding	C-reactive protein, pentraxin-related
novel_NIR_571	chr1	172525767	172627828	+	172525767	172658850	A3SS	ENSMUST00000194251.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037942.6	Crp	chr1	protein_coding	C-reactive protein, pentraxin-related
novel_NIR_572	chr1	172525767	172682279	+	172525767	172658850	3pMXE	ENSMUST00000194251.2	novel	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	5	0	5	0	y	0.60	3	2	3	2	y	1.00	6	0	6	0	y	0.71	5	2	5	2	y	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	10	0	10	0	y	1.00	5	0	5	0	y	1.00	3	0	3	0	y	ENSMUSG00000037942.6	Crp	chr1	protein_coding	C-reactive protein, pentraxin-related
novel_NIR_573	chr1	172757680	172779440	+	172778083	172779440	5pMXE	ENSMUST00000215254.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037924.7	Olfr16	chr1	protein_coding	olfactory receptor 16
novel_NIR_574	chr1	172774311	172779440	+	172778083	172779440	5pMXE	ENSMUST00000215254.2	novel	1.00	16	0	16	0	y	1.00	19	0	19	0	y	1.00	110	0	110	0	y	1.00	8	0	8	0	y	1.00	36	0	36	0	y	1.00	91	0	91	0	y	1.00	27	0	27	0	y	1.00	52	0	52	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	9	0	9	0	y	ENSMUSG00000037924.7	Olfr16	chr1	protein_coding	olfactory receptor 16
novel_NIR_575	chr1	172779788	172786339	+	172779788	172783692	3pMXE	ENSMUST00000215254.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	10	0	10	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	8	0	8	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000037924.7	Olfr16	chr1	protein_coding	olfactory receptor 16
novel_NIR_576	chr1	172779788	172787173	+	172779788	172783692	3pMXE	ENSMUST00000215254.2	novel	1.00	6	0	6	0	y	1.00	10	0	10	0	y	1.00	88	0	88	0	y	1.00	3	0	3	0	y	1.00	41	0	41	0	y	1.00	67	0	67	0	y	1.00	19	0	19	0	y	1.00	49	0	49	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.75	3	1	3	1	y	ENSMUSG00000037924.7	Olfr16	chr1	protein_coding	olfactory receptor 16
novel_NIR_577	chr1	172779788	172823544	+	172779788	172783692	3pMXE	ENSMUST00000215254.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000037924.7	Olfr16	chr1	protein_coding	olfactory receptor 16
novel_NIR_578	chr1	173314458	173316487	-	173314458	173318553	A5SS	ENSMUST00000160565.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037849.9	Ifi206	chr1	protein_coding	interferon activated gene 206
novel_NIR_579	chr1	173418026	173422587	-	173418026;173421610	173421504;173422587	ES	ENSMUST00000150649.9	novel	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	0.67	1	0.5	1	0;1	n	1.00	2	0.0	2	0;0	y	0.00	0	1.0	0	1;1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	0.00	0	1.5	0	2;1	n	0.00	0	0.5	0	1;0	n	ENSMUSG00000073491.12	Ifi213	chr1	protein_coding	interferon activated gene 213
novel_NIR_580	chr1	173418026	173422587	-	173421610	173422587	3pMXE	ENSMUST00000097462.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000073491.12	Ifi213	chr1	protein_coding	interferon activated gene 213
novel_NIR_581	chr1	173560008	173562007	-	173560008	173562662	A5SS	ENSMUST00000042610.15	novel	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.33	3	6	3	6	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000073490.12	Ifi207	chr1	protein_coding	interferon activated gene 207
novel_NIR_582	chr1	173560008	173562007	-	173560008	173562683	A5SS	ENSMUST00000127730.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000073490.12	Ifi207	chr1	protein_coding	interferon activated gene 207
novel_NIR_583	chr1	173608761	173609802	-	173608761	173609813	A5SS	ENSMUST00000155076.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000090222.3	Ifi203-ps	chr1	unprocessed_pseudogene	interferon activated gene 203, pseudogene
novel_NIR_584	chr1	173733888	173735163	-	173733894	173735163	A3SS	ENSMUST00000009340.10	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026536.10	Ifi211	chr1	protein_coding	interferon activated gene 211
novel_NIR_585	chr1	173754788	173755805	-	173754788	173755841	A5SS	ENSMUST00000129829.8	novel	0.80	4	1	4	1	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	ENSMUSG00000039997.17	Ifi203	chr1	protein_coding	interferon activated gene 203
novel_NIR_586	chr1	173754788	173755805	-	173754788	173761349	A5SS	ENSMUST00000042228.15	novel	1.00	4	0	4	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000039997.17	Ifi203	chr1	protein_coding	interferon activated gene 203
novel_NIR_587	chr1	173754788	173755805	-	173754788	173762576	A5SS	ENSMUST00000081216.12	novel	0.44	4	5	4	5	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	5	0	5	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	ENSMUSG00000039997.17	Ifi203	chr1	protein_coding	interferon activated gene 203
novel_NIR_588	chr1	174594587	174618824	+	174571872	174618824	A5SS	ENSMUST00000030039.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	2	2	2	2	y	-	-	-	-	-	-	ENSMUSG00000028354.14	Fmn2	chr1	protein_coding	formin 2
novel_NIR_589	chr1	174599885	174618824	+	174571872	174618824	A5SS	ENSMUST00000030039.13	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000028354.14	Fmn2	chr1	protein_coding	formin 2
novel_NIR_590	chr1	174664848	174683220	-	174664848	174749139	A5SS	ENSMUST00000055294.4	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	17	0	17	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.21	6	22	6	22	y	ENSMUSG00000050069.4	Grem2	chr1	protein_coding	gremlin 2, DAN family BMP antagonist
novel_NIR_591	chr1	174664848	174700000	-	174664848	174749139	A5SS	ENSMUST00000055294.4	novel	0.40	2	3	2	3	n	0.00	0	3	0	3	n	0.19	4	17	4	17	n	0.00	0	11	0	11	n	0.23	3	10	3	10	n	0.00	0	5	0	5	n	0.40	2	3	2	3	n	0.25	2	6	2	6	n	0.13	2	13	2	13	n	0.20	2	8	2	8	y	0.00	0	5	0	5	n	0.04	1	22	1	22	n	ENSMUSG00000050069.4	Grem2	chr1	protein_coding	gremlin 2, DAN family BMP antagonist
novel_NIR_592	chr1	174664848;174700045	174700000;174749139	-	174664848	174749139	cassetteExon	ENSMUST00000055294.4	novel	0.40	2.0	3	2;2	3	y	0.00	0.0	3	0;0	3	n	0.19	4.0	17	4;4	17	y	0.00	0.0	11	0;0	11	n	0.35	5.5	10	3;8	10	y	0.00	0.0	5	0;0	5	n	0.40	2.0	3	2;2	3	y	0.25	2.0	6	2;2	6	y	0.07	1.0	13	2;0	13	n	0.11	1.0	8	2;0	8	n	0.00	0.0	5	0;0	5	n	0.10	2.5	22	1;4	22	n	ENSMUSG00000050069.4	Grem2	chr1	protein_coding	gremlin 2, DAN family BMP antagonist
novel_NIR_593	chr1	175447519	175453017	-	175450242	175453017	A3SS&ES	ENSMUST00000154956.3	novel	0.33	2	4	2	4	y	1.00	2	0	2	0	y	1.00	7	0	7	0	y	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.67	6	3	6	3	y	0.67	2	1	2	1	y	0.80	4	1	4	1	y	0.50	3	3	3	3	y	0.50	5	5	5	5	y	1.00	6	0	6	0	y	1.00	1	0	1	0	n	ENSMUSG00000026526.15	Fh1	chr1	protein_coding	fumarate hydratase 1
novel_NIR_594	chr1	175447540	175453017	-	175450242	175453017	A3SS&ES	ENSMUST00000154956.3	novel	0.76	13	4	13	4	y	1.00	17	0	17	0	y	1.00	20	0	20	0	y	1.00	15	0	15	0	y	0.80	12	3	12	3	y	0.62	5	3	5	3	y	0.94	15	1	15	1	y	0.89	8	1	8	1	y	0.77	10	3	10	3	y	0.64	9	5	9	5	y	1.00	6	0	6	0	y	1.00	16	0	16	0	y	ENSMUSG00000026526.15	Fh1	chr1	protein_coding	fumarate hydratase 1
novel_NIR_595	chr1	175476883	175477131	+	175476883	175478169	A3SS	ENSMUST00000140474.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	0.80	4	1	4	1	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.75	3	1	3	1	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.25	1	3	1	3	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000039783.16	Kmo	chr1	protein_coding	kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)
novel_NIR_596	chr1	175479274	175481133	+	175479274	175482635	A3SS	ENSMUST00000140474.8	novel	0.00	0	4	0	4	n	0.75	3	1	3	1	y	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000039783.16	Kmo	chr1	protein_coding	kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)
novel_NIR_597	chr1	175485987	175486079	+	175484369	175486079	A5SS	ENSMUST00000097458.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039783.16	Kmo	chr1	protein_coding	kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)
novel_NIR_598	chr1	176586083	176596799	-	176586083;176589066	176588917;176596799	ES	ENSMUST00000057037.13	novel	0.00	0	2.5	0	4;1	n	1.00	1	0.0	1	0;0	n	0.42	4	5.5	4	8;3	y	0.00	0	2.0	0	4;0	n	0.00	0	4.5	0	6;3	n	0.60	3	2.0	3	1;3	y	0.25	1	3.0	1	2;4	n	0.00	0	4.5	0	5;4	n	0.00	0	2.5	0	2;3	n	0.29	1	2.5	1	5;0	n	0.00	0	1.0	0	2;0	n	0.00	0	1.0	0	2;0	n	ENSMUSG00000057335.12	Cep170	chr1	protein_coding	centrosomal protein 170
novel_NIR_599	chr1	176586083	176597279	-	176586083	176588917	A5SS&ES	ENSMUST00000195433.6	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.17	1	5	1	5	n	0.50	2	2	2	2	y	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.33	1	2	1	2	n	ENSMUSG00000057335.12	Cep170	chr1	protein_coding	centrosomal protein 170
novel_NIR_600	chr1	176589066	176597279	-	176589066	176596799	A5SS	ENSMUST00000195433.6	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.57	4	3	4	3	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000057335.12	Cep170	chr1	protein_coding	centrosomal protein 170
novel_NIR_601	chr1	176589066	176597279	-	176589066;176597092	176596799;176597279	ES	ENSMUST00000057037.13	novel	0.00	0	1.0	0	1;1	n	0.00	0	0.5	0	0;1	n	0.57	4	3.0	4	3;3	y	0.00	0	1.5	0	0;3	n	0.00	0	2.5	0	3;2	n	0.22	1	3.5	1	3;4	n	0.00	0	2.5	0	4;1	n	0.00	0	4.0	0	4;4	n	0.29	1	2.5	1	3;2	n	0.33	1	2.0	1	0;4	n	1.00	1	0.0	1	0;0	n	0.29	1	2.5	1	0;5	n	ENSMUSG00000057335.12	Cep170	chr1	protein_coding	centrosomal protein 170
novel_NIR_602	chr1	176642621	176652305	+	176642621	176652318	A3SS	ENSMUST00000150429.8	novel	0.00	0	5	0	5	n	-	-	-	-	-	-	0.39	7	11	7	11	y	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.23	3	10	3	10	y	0.00	0	16	0	16	n	0.14	1	6	1	6	n	0.00	0	17	0	17	n	0.11	2	16	2	16	n	0.00	0	7	0	7	n	0.20	4	16	4	16	y	ENSMUSG00000026504.18	Sdccag8	chr1	protein_coding	serologically defined colon cancer antigen 8
novel_NIR_603	chr1	177270161	177271551	+	177270161	177270790	A3SS&ES	ENSMUST00000195549.6	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000063659.12	Zbtb18	chr1	protein_coding	zinc finger and BTB domain containing 18
novel_NIR_604	chr1	177270161	177271551	+	177270161;177270907	177270790;177271551	ES	ENSMUST00000194319.2	novel	-	-	-	-	-	-	0.50	1	1.0	1	0;2	n	0.67	2	1.0	2	1;1	y	-	-	-	-	-	-	0.67	1	0.5	1	0;1	n	-	-	-	-	-	-	0.50	1	1.0	1	0;2	n	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	1.00	1	0.0	1	0;0	n	0.00	0	1.0	0	0;2	n	-	-	-	-	-	-	ENSMUSG00000063659.12	Zbtb18	chr1	protein_coding	zinc finger and BTB domain containing 18
novel_NIR_605	chr1	177271658	177272305	+	177270907	177272305	A5SS	ENSMUST00000192699.2	novel	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.67	2	1	2	1	y	ENSMUSG00000063659.12	Zbtb18	chr1	protein_coding	zinc finger and BTB domain containing 18
novel_NIR_606	chr1	177271658	177272305	+	177271658	177274655	A3SS	ENSMUST00000194319.2	novel	1.00	4	0	4	0	y	0.14	1	6	1	6	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.50	3	3	3	3	y	0.14	1	6	1	6	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.33	1	2	1	2	n	0.40	2	3	2	3	y	ENSMUSG00000063659.12	Zbtb18	chr1	protein_coding	zinc finger and BTB domain containing 18
novel_NIR_607	chr1	178248326	178264967	+	178233698	178264967	A5SS	ENSMUST00000027775.9	novel	0.00	0	2	0	2	n	0.50	3	3	3	3	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.12	1	7	1	7	n	0.00	0	10	0	10	n	0.46	6	7	6	7	y	ENSMUSG00000026495.9	Efcab2	chr1	protein_coding	EF-hand calcium binding domain 2
novel_NIR_608	chr1	178248326	178264967	+	178261881	178264967	A5SS&ES	ENSMUST00000194861.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	6	0	6	0	y	ENSMUSG00000026495.9	Efcab2	chr1	protein_coding	EF-hand calcium binding domain 2
novel_NIR_609	chr1	179356919	179357095	-	179356919	179361198	A5SS	ENSMUST00000150778.2	novel	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000026492.12	Tfb2m	chr1	protein_coding	transcription factor B2, mitochondrial
novel_NIR_610	chr1	179370022	179370603	-	179370022	179370490	A5SS	ENSMUST00000129009.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.67	2	1	2	1	y	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026492.12	Tfb2m	chr1	protein_coding	transcription factor B2, mitochondrial
novel_NIR_611	chr1	179370022	179370603	-	179370022	179373387	A5SS	ENSMUST00000129982.8	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000026492.12	Tfb2m	chr1	protein_coding	transcription factor B2, mitochondrial
novel_NIR_612	chr1	179590460	179591035	-	179590527	179591035	A3SS	ENSMUST00000027768.14	novel	0.00	0	20	0	20	n	0.15	2	11	2	11	y	0.00	0	36	0	36	n	0.00	0	29	0	29	n	0.00	0	48	0	48	n	0.00	0	30	0	30	n	0.00	0	30	0	30	n	0.00	0	24	0	24	n	0.00	0	39	0	39	n	0.00	0	40	0	40	n	0.00	0	16	0	16	n	0.00	0	29	0	29	n	ENSMUSG00000026491.14	Ahctf1	chr1	protein_coding	AT hook containing transcription factor 1
novel_NIR_613	chr1	179626847	179630918	-	179626903	179630918	A3SS	ENSMUST00000027768.14	novel	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.27	3	8	3	8	y	0.00	0	5	0	5	n	0.00	0	15	0	15	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	ENSMUSG00000026491.14	Ahctf1	chr1	protein_coding	AT hook containing transcription factor 1
novel_NIR_614	chr1	179798519	179826927	+	179788852	179826927	A5SS	ENSMUST00000097453.9	novel	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.06	1	16	1	16	n	0.00	0	9	0	9	n	0.20	3	12	3	12	y	0.00	0	11	0	11	n	0.00	0	17	0	17	n	0.00	0	17	0	17	n	0.00	0	6	0	6	n	0.12	2	15	2	15	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	ENSMUSG00000026490.19	Cdc42bpa	chr1	protein_coding	CDC42 binding protein kinase alpha
novel_NIR_615	chr1	179798519	179826927	+	179803559	179826927	5pMXE	ENSMUST00000143350.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026490.19	Cdc42bpa	chr1	protein_coding	CDC42 binding protein kinase alpha
novel_NIR_616	chr1	179847265	179859070	+	179852367	179859070	A5SS&ES	ENSMUST00000134959.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026490.19	Cdc42bpa	chr1	protein_coding	CDC42 binding protein kinase alpha
novel_NIR_617	chr1	179939018	179939310	+	179936843	179939310	A5SS	ENSMUST00000134959.8	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026490.19	Cdc42bpa	chr1	protein_coding	CDC42 binding protein kinase alpha
novel_NIR_618	chr1	179939018	179939310	+	179938934	179939310	A5SS	ENSMUST00000097453.9	novel	0.05	1	18	1	18	n	0.14	1	6	1	6	n	0.00	0	34	0	34	n	0.06	2	29	2	29	n	0.00	0	57	0	57	n	0.00	0	15	0	15	n	0.06	1	16	1	16	n	0.00	0	23	0	23	n	0.20	2	8	2	8	y	0.00	0	20	0	20	n	0.00	0	16	0	16	n	0.00	0	25	0	25	n	ENSMUSG00000026490.19	Cdc42bpa	chr1	protein_coding	CDC42 binding protein kinase alpha
novel_NIR_619	chr1	180009812	180012027	-	180009812	180010028	5pMXE	ENSMUST00000162725.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000026489.14	Coq8a	chr1	protein_coding	coenzyme Q8A
novel_NIR_620	chr1	180009812	180012027	-	180009812	180013466	A5SS	ENSMUST00000161746.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000026489.14	Coq8a	chr1	protein_coding	coenzyme Q8A
novel_NIR_621	chr1	180009812	180012027	-	180009812	180021001	A5SS	ENSMUST00000170472.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.60	3	2	3	2	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	22	0	22	n	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	2	0	2	0	y	ENSMUSG00000026489.14	Coq8a	chr1	protein_coding	coenzyme Q8A
novel_NIR_622	chr1	180009812	180012027	-	180009812	180021168	A5SS	ENSMUST00000159914.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000026489.14	Coq8a	chr1	protein_coding	coenzyme Q8A
novel_NIR_623	chr1	180009812	180012027	-	180009812	180023533	A5SS	ENSMUST00000161814.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000026489.14	Coq8a	chr1	protein_coding	coenzyme Q8A
novel_NIR_624	chr1	180009812	180012027	-	180009812	180027052	A5SS	ENSMUST00000161743.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000026489.14	Coq8a	chr1	protein_coding	coenzyme Q8A
novel_NIR_625	chr1	180009812	180019629	-	180009812	180010028	5pMXE	ENSMUST00000162725.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000026489.14	Coq8a	chr1	protein_coding	coenzyme Q8A
novel_NIR_626	chr1	180009812	180019629	-	180009812	180013466	A5SS&ES	ENSMUST00000161746.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000026489.14	Coq8a	chr1	protein_coding	coenzyme Q8A
novel_NIR_627	chr1	180009812	180019629	-	180009812	180021001	A5SS	ENSMUST00000170472.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.19	5	22	5	22	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.25	1	3	1	3	n	1.00	1	0	1	0	n	ENSMUSG00000026489.14	Coq8a	chr1	protein_coding	coenzyme Q8A
novel_NIR_628	chr1	180009812	180019629	-	180009812	180023533	A5SS	ENSMUST00000161814.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000026489.14	Coq8a	chr1	protein_coding	coenzyme Q8A
novel_NIR_629	chr1	180009812	180019629	-	180009812	180027052	A5SS	ENSMUST00000161743.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000026489.14	Coq8a	chr1	protein_coding	coenzyme Q8A
novel_NIR_630	chr1	180057049	180057535	-	180057049	180057407	A5SS&ES	ENSMUST00000111104.2	novel	0.00	0	22	0	22	n	0.26	7	20	7	20	y	0.00	0	11	0	11	n	0.13	2	13	2	13	n	0.28	8	21	8	21	y	0.14	2	12	2	12	n	0.12	4	30	4	30	n	0.43	6	8	6	8	y	0.45	13	16	13	16	y	0.33	16	33	16	33	y	0.00	0	22	0	22	n	0.18	7	31	7	31	y	ENSMUSG00000010609.16	Psen2	chr1	protein_coding	presenilin 2
novel_NIR_631	chr1	180085238	180085362	+	180085238	180102354	A3SS	ENSMUST00000192164.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	ENSMUSG00000102923.2	Gm31728	chr1	lncRNA	predicted gene, 31728
novel_NIR_632	chr1	180085238	180091307	+	180085238	180102354	A3SS	ENSMUST00000192164.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000102923.2	Gm31728	chr1	lncRNA	predicted gene, 31728
novel_NIR_633	chr1	180085238	180092618	+	180085238	180102354	A3SS	ENSMUST00000192164.2	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	3	0	3	0	y	ENSMUSG00000102923.2	Gm31728	chr1	lncRNA	predicted gene, 31728
novel_NIR_634	chr1	180195858	180240239	+	180161795	180240239	A5SS	ENSMUST00000070181.7	novel	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.29	2	5	2	5	y	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	ENSMUSG00000038855.11	Itpkb	chr1	protein_coding	inositol 1,4,5-trisphosphate 3-kinase B
novel_NIR_635	chr1	180631196	180637682	-	180630767	180637682	A3SS	ENSMUST00000081026.11	novel	-	-	-	-	-	-	0.00	0	34	0	34	n	0.00	0	41	0	41	n	0.00	0	32	0	32	n	0.00	0	57	0	57	n	-	-	-	-	-	-	0.00	0	53	0	53	n	0.00	0	24	0	24	n	1.00	4	0	4	0	y	0.03	2	71	2	71	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000060743.13	H3f3a	chr1	protein_coding	H3.3 histone A
novel_NIR_636	chr1	180788423	180788651	+	180788423	180788613	A3SS	ENSMUST00000027800.15	novel	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.00	0	19	0	19	n	0.00	0	25	0	25	n	0.00	0	41	0	41	n	0.25	2	6	2	6	y	0.00	0	37	0	37	n	0.00	0	9	0	9	n	0.00	0	18	0	18	n	0.00	0	20	0	20	n	0.00	0	14	0	14	n	0.02	1	41	1	41	n	ENSMUSG00000026519.17	Tmem63a	chr1	protein_coding	transmembrane protein 63a
novel_NIR_637	chr1	180829551	180841529	-	180829551	180848333	A5SS	ENSMUST00000147585.2	novel	0.70	7	3	7	3	y	0.33	1	2	1	2	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.50	3	3	3	3	y	0.00	0	1	0	1	n	0.50	4	4	4	4	y	-	-	-	-	-	-	0.20	1	4	1	4	n	0.31	5	11	5	11	y	0.00	0	6	0	6	n	0.73	8	3	8	3	n	ENSMUSG00000038776.14	Ephx1	chr1	protein_coding	epoxide hydrolase 1, microsomal
novel_NIR_638	chr1	180829551	180844960	-	180829551	180848333	A5SS	ENSMUST00000147585.2	novel	0.50	3	3	3	3	y	0.33	1	2	1	2	n	1.00	2	0	2	0	y	0.40	2	3	2	3	y	0.50	3	3	3	3	y	0.00	0	1	0	1	n	0.20	1	4	1	4	n	-	-	-	-	-	-	0.56	5	4	5	4	y	0.48	10	11	10	11	y	0.45	5	6	5	6	y	0.67	6	3	6	3	y	ENSMUSG00000038776.14	Ephx1	chr1	protein_coding	epoxide hydrolase 1, microsomal
novel_NIR_639	chr1	180829551	180848342	-	180829551	180848333	A5SS	ENSMUST00000147585.2	novel	0.00	0	3	0	3	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	ENSMUSG00000038776.14	Ephx1	chr1	protein_coding	epoxide hydrolase 1, microsomal
novel_NIR_640	chr1	180863375	180882322	+	180878965	180882322	5pMXE	ENSMUST00000036819.7	novel	1.00	9	0	9	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	8	0	8	0	y	1.00	12	0	12	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	9	0	9	0	y	1.00	19	0	19	0	y	1.00	14	0	14	0	y	1.00	20	0	20	0	y	ENSMUSG00000038768.9	9130409I23Rik	chr1	protein_coding	RIKEN cDNA 9130409I23 gene
novel_NIR_641	chr1	180962625	180964438	-	180962629	180964438	A3SS	ENSMUST00000027797.9	novel	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.00	0	20	0	20	n	0.00	0	21	0	21	n	0.00	0	31	0	31	n	0.10	1	9	1	9	n	0.00	0	16	0	16	n	0.00	0	16	0	16	n	0.17	4	20	4	20	y	0.10	3	26	3	26	n	0.00	0	26	0	26	n	0.03	1	32	1	32	n	ENSMUSG00000026516.9	Nvl	chr1	protein_coding	nuclear VCP-like
novel_NIR_642	chr1	180966866	180969891	-	180966871	180969891	A3SS	ENSMUST00000027797.9	novel	0.18	2	9	2	9	y	0.14	1	6	1	6	n	0.05	1	18	1	18	n	0.04	1	22	1	22	n	0.02	1	40	1	40	n	0.00	0	5	0	5	n	0.08	1	11	1	11	n	0.00	0	10	0	10	n	0.00	0	17	0	17	n	0.00	0	23	0	23	n	0.00	0	14	0	14	n	0.00	0	20	0	20	n	ENSMUSG00000026516.9	Nvl	chr1	protein_coding	nuclear VCP-like
novel_NIR_643	chr1	180966871	180969883	-	180966871	180969891	A5SS	ENSMUST00000027797.9	novel	0.00	0	9	0	9	n	0.14	1	6	1	6	n	0.05	1	18	1	18	n	0.04	1	22	1	22	n	0.02	1	40	1	40	n	0.00	0	5	0	5	n	0.15	2	11	2	11	y	0.00	0	10	0	10	n	0.00	0	17	0	17	n	0.00	0	23	0	23	n	0.00	0	14	0	14	n	0.09	2	20	2	20	n	ENSMUSG00000026516.9	Nvl	chr1	protein_coding	nuclear VCP-like
novel_NIR_644	chr1	180972466	180973706	+	180972466	180983424	A3SS	ENSMUST00000193907.6	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	2	4	2	4	y	ENSMUSG00000062169.14	Cnih4	chr1	protein_coding	cornichon family AMPA receptor auxiliary protein 4
novel_NIR_645	chr1	181005396	181006071	-	181005396	181008031	A5SS	ENSMUST00000159673.8	novel	0.82	9	2	9	2	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000038733.15	Wdr26	chr1	protein_coding	WD repeat domain 26
novel_NIR_646	chr1	181956553	181958901	+	181952540	181958901	A5SS	ENSMUST00000111018.2	novel	0.00	0	21	0	21	n	0.00	0	16	0	16	n	0.08	3	35	3	35	n	0.00	0	7	0	7	n	0.26	9	26	9	26	y	0.00	0	22	0	22	n	0.08	2	23	2	23	n	0.00	0	20	0	20	n	0.19	4	17	4	17	y	0.06	1	17	1	17	n	0.00	0	25	0	25	n	0.00	0	19	0	19	n	ENSMUSG00000026511.8	Srp9	chr1	protein_coding	signal recognition particle 9
novel_NIR_647	chr1	182107283	182118345	-	182107283	182109726	5pMXE	ENSMUST00000133052.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	ENSMUSG00000038633.6	Degs1	chr1	protein_coding	delta(4)-desaturase, sphingolipid 1
novel_NIR_648	chr1	182120658	182125474	+	182115795	182125474	A5SS	ENSMUST00000189594.2	novel	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000100147.3	1700047M11Rik	chr1	lncRNA	RIKEN cDNA 1700047M11 gene
novel_NIR_649	chr1	182306178	182306530	-	182306178	182307271	A5SS	ENSMUST00000068505.10	novel	0.32	23	48	23	48	y	0.30	18	43	18	43	y	0.11	11	88	11	88	n	0.15	12	70	12	70	y	0.25	29	86	29	86	y	0.08	5	54	5	54	n	0.21	32	122	32	122	y	0.27	19	51	19	51	y	0.23	15	49	15	49	y	0.20	26	104	26	104	y	0.40	41	62	41	62	y	0.40	29	44	29	44	y	ENSMUSG00000026509.16	Capn2	chr1	protein_coding	calpain 2
novel_NIR_650	chr1	182412088	182424512	+	182399567	182424512	A5SS	ENSMUST00000168514.7	novel	1.00	8	0	8	0	y	0.00	0	3	0	3	n	0.82	32	7	32	7	y	0.46	13	15	13	15	y	0.72	41	16	41	16	y	0.79	56	15	56	15	y	0.86	38	6	38	6	y	0.65	40	22	40	22	y	0.91	10	1	10	1	y	0.80	8	2	8	2	y	1.00	9	0	9	0	y	-	-	-	-	-	-	ENSMUSG00000038599.15	Capn8	chr1	protein_coding	calpain 8
novel_NIR_651	chr1	182415662	182424512	+	182399567	182424512	A5SS	ENSMUST00000168514.7	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.22	2	7	2	7	y	0.00	0	15	0	15	n	0.00	0	16	0	16	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	22	0	22	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038599.15	Capn8	chr1	protein_coding	calpain 8
novel_NIR_652	chr1	182453202	182455101	+	182451548	182455101	A5SS	ENSMUST00000048941.14	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.05	1	21	1	21	n	0.00	0	1	0	1	n	0.07	1	13	1	13	n	0.15	2	11	2	11	y	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038599.15	Capn8	chr1	protein_coding	calpain 8
novel_NIR_653	chr1	182454085	182455101	+	182451548	182455101	A5SS	ENSMUST00000048941.14	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	21	0	21	n	0.00	0	1	0	1	n	0.07	1	13	1	13	n	0.08	1	11	1	11	n	0.29	2	5	2	5	y	0.00	0	14	0	14	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038599.15	Capn8	chr1	protein_coding	calpain 8
novel_NIR_654	chr1	182782776	182785511	+	182782447	182785511	A5SS	ENSMUST00000193539.6	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	ENSMUSG00000079164.11	Tlr5	chr1	protein_coding	toll-like receptor 5
novel_NIR_655	chr1	182791787	182796579	+	182782447	182796579	A5SS	ENSMUST00000193687.7	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.57	4	3	4	3	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000079164.11	Tlr5	chr1	protein_coding	toll-like receptor 5
novel_NIR_656	chr1	182791787	182796579	+	182785634	182796579	A5SS	ENSMUST00000193539.6	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.36	4	7	4	7	y	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000079164.11	Tlr5	chr1	protein_coding	toll-like receptor 5
novel_NIR_657	chr1	182955187	182957131	-	182955187	182984516	A5SS	ENSMUST00000003035.12	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030768.13	Disp1	chr1	protein_coding	dispatched RND transporter family member 1
novel_NIR_658	chr1	182955187	182957131	-	182955187	183002887	A5SS	ENSMUST00000195372.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030768.13	Disp1	chr1	protein_coding	dispatched RND transporter family member 1
novel_NIR_659	chr1	183074209	183075898	-	183073567	183075898	A3SS	ENSMUST00000194327.6	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000046836.14	Brox	chr1	protein_coding	BRO1 domain and CAAX motif containing
novel_NIR_660	chr1	183074209	183075898	-	183074145	183075898	A3SS	ENSMUST00000057062.12	novel	0.00	0	26	0	26	n	0.11	1	8	1	8	n	0.00	0	24	0	24	n	0.00	0	12	0	12	n	0.00	0	23	0	23	n	0.00	0	9	0	9	n	0.00	0	16	0	16	n	0.00	0	19	0	19	n	0.00	0	15	0	15	n	0.00	0	22	0	22	n	0.17	2	10	2	10	y	0.00	0	29	0	29	n	ENSMUSG00000046836.14	Brox	chr1	protein_coding	BRO1 domain and CAAX motif containing
novel_NIR_661	chr1	183074209	183075898	-	183074189	183075898	A3SS	ENSMUST00000195054.6	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000046836.14	Brox	chr1	protein_coding	BRO1 domain and CAAX motif containing
novel_NIR_662	chr1	183170430	183172261	+	183170498	183172261	A5SS	ENSMUST00000192076.3	novel	0.67	8	4	8	4	y	0.55	6	5	6	5	y	0.45	13	16	13	16	y	0.75	3	1	3	1	y	0.71	10	4	10	4	y	0.40	4	6	4	6	y	0.13	2	13	2	13	n	0.30	3	7	3	7	y	0.50	4	4	4	4	y	0.73	8	3	8	3	y	0.89	8	1	8	1	y	0.50	3	3	3	3	y	ENSMUSG00000072258.12	Taf1a	chr1	protein_coding	TATA-box binding protein associated factor, RNA polymerase I, A
novel_NIR_663	chr1	183189543	183190054	+	183189582	183190054	A5SS	ENSMUST00000192076.3	novel	0.09	2	21	2	21	n	0.07	1	14	1	14	n	0.40	8	12	8	12	y	0.00	0	9	0	9	n	0.15	5	28	5	28	y	0.20	1	4	1	4	n	0.00	0	19	0	19	n	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.00	0	23	0	23	n	0.00	0	17	0	17	n	0.11	2	16	2	16	n	ENSMUSG00000072258.12	Taf1a	chr1	protein_coding	TATA-box binding protein associated factor, RNA polymerase I, A
novel_NIR_664	chr1	184539385	184539918	-	184539385	184540977	A5SS	ENSMUST00000189492.2	novel	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	2	0	2	n	ENSMUSG00000026621.14	Mtarc1	chr1	protein_coding	mitochondrial amidoxime reducing component 1
novel_NIR_665	chr1	184539385	184540791	-	184539385	184540977	A5SS	ENSMUST00000189492.2	novel	1.00	1	0	1	0	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000026621.14	Mtarc1	chr1	protein_coding	mitochondrial amidoxime reducing component 1
novel_NIR_666	chr1	184539385	184543099	-	184539385	184540977	5pMXE	ENSMUST00000189492.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	11	0	11	0	y	-	-	-	-	-	-	0.80	4	1	4	1	y	1.00	14	0	14	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000026621.14	Mtarc1	chr1	protein_coding	mitochondrial amidoxime reducing component 1
novel_NIR_667	chr1	184554603	184554693	-	184554603	184564773	A5SS	ENSMUST00000159293.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000073481.10	Mtarc2	chr1	protein_coding	mitochondrial amidoxime reducing component 2
novel_NIR_668	chr1	184554747	184554932	-	184554747	184559305	A5SS	ENSMUST00000162261.8	novel	0.57	12	9	12	9	y	0.65	20	11	20	11	y	1.00	15	0	15	0	y	0.42	11	15	11	15	y	0.58	11	8	11	8	y	0.42	5	7	5	7	y	0.00	0	9	0	9	n	0.47	9	10	9	10	y	0.14	2	12	2	12	n	0.17	5	25	5	25	y	0.33	6	12	6	12	y	0.35	11	20	11	20	y	ENSMUSG00000073481.10	Mtarc2	chr1	protein_coding	mitochondrial amidoxime reducing component 2
novel_NIR_669	chr1	184554747	184554932	-	184554747	184559385	A5SS	ENSMUST00000162866.7	novel	0.63	12	7	12	7	y	0.69	20	9	20	9	y	0.68	15	7	15	7	y	0.69	11	5	11	5	y	0.52	11	10	11	10	y	0.62	5	3	5	3	y	0.00	0	7	0	7	n	0.75	9	3	9	3	y	0.17	2	10	2	10	y	0.26	5	14	5	14	y	0.43	6	8	6	8	y	0.46	11	13	11	13	y	ENSMUSG00000073481.10	Mtarc2	chr1	protein_coding	mitochondrial amidoxime reducing component 2
novel_NIR_670	chr1	184554747	184554932	-	184554747	184559595	A5SS	ENSMUST00000161359.8	novel	1.00	12	0	12	0	y	0.91	20	2	20	2	y	0.94	15	1	15	1	y	0.85	11	2	11	2	y	1.00	11	0	11	0	y	0.83	5	1	5	1	y	0.00	0	2	0	2	n	1.00	9	0	9	0	y	0.22	2	7	2	7	y	0.62	5	3	5	3	n	0.75	6	2	6	2	y	1.00	11	0	11	0	y	ENSMUSG00000073481.10	Mtarc2	chr1	protein_coding	mitochondrial amidoxime reducing component 2
novel_NIR_671	chr1	184554747	184555878	-	184554747	184559595	A5SS	ENSMUST00000161359.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000073481.10	Mtarc2	chr1	protein_coding	mitochondrial amidoxime reducing component 2
novel_NIR_672	chr1	184554747	184556695	-	184554747	184559305	A5SS	ENSMUST00000162261.8	novel	0.25	3	9	3	9	y	0.15	2	11	2	11	y	1.00	6	0	6	0	y	0.25	5	15	5	15	y	0.43	6	8	6	8	y	0.42	5	7	5	7	y	0.31	4	9	4	9	y	0.00	0	10	0	10	n	0.08	1	12	1	12	n	0.07	2	25	2	25	n	0.43	9	12	9	12	y	0.09	2	20	2	20	n	ENSMUSG00000073481.10	Mtarc2	chr1	protein_coding	mitochondrial amidoxime reducing component 2
novel_NIR_673	chr1	184554747	184556695	-	184554747	184559385	A5SS	ENSMUST00000162866.7	novel	0.30	3	7	3	7	y	0.18	2	9	2	9	y	0.46	6	7	6	7	y	0.50	5	5	5	5	y	0.38	6	10	6	10	y	0.62	5	3	5	3	y	0.36	4	7	4	7	y	0.00	0	3	0	3	n	0.09	1	10	1	10	n	0.12	2	14	2	14	n	0.53	9	8	9	8	y	0.13	2	13	2	13	n	ENSMUSG00000073481.10	Mtarc2	chr1	protein_coding	mitochondrial amidoxime reducing component 2
novel_NIR_674	chr1	184554747	184556695	-	184554747	184559595	A5SS	ENSMUST00000161359.8	novel	1.00	3	0	3	0	y	0.50	2	2	2	2	y	0.86	6	1	6	1	y	0.71	5	2	5	2	y	1.00	6	0	6	0	y	0.83	5	1	5	1	y	0.67	4	2	4	2	y	-	-	-	-	-	-	0.12	1	7	1	7	n	0.40	2	3	2	3	y	0.82	9	2	9	2	y	1.00	2	0	2	0	y	ENSMUSG00000073481.10	Mtarc2	chr1	protein_coding	mitochondrial amidoxime reducing component 2
novel_NIR_675	chr1	184966382	184967501	+	184966399	184967501	A5SS	ENSMUST00000194740.6	novel	0.08	1	11	1	11	n	0.00	0	9	0	9	n	0.10	2	18	2	18	n	0.20	2	8	2	8	y	0.00	0	21	0	21	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.17	1	5	1	5	n	0.00	0	19	0	19	n	ENSMUSG00000039318.13	Rab3gap2	chr1	protein_coding	RAB3 GTPase activating protein subunit 2
novel_NIR_676	chr1	184966403	184967501	+	184966399	184967501	A5SS	ENSMUST00000194740.6	novel	0.15	2	11	2	11	y	0.00	0	9	0	9	n	0.05	1	18	1	18	n	0.00	0	8	0	8	n	0.00	0	21	0	21	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	19	0	19	n	ENSMUSG00000039318.13	Rab3gap2	chr1	protein_coding	RAB3 GTPase activating protein subunit 2
novel_NIR_677	chr1	185061545	185070303	+	185064518	185070303	5pMXE	ENSMUST00000151769.2	novel	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.50	3	3	3	3	y	0.50	3	3	3	3	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.30	3	7	3	7	y	0.00	0	5	0	5	n	0.22	2	7	2	7	y	ENSMUSG00000026617.17	Bpnt1	chr1	protein_coding	3'(2'), 5'-bisphosphate nucleotidase 1
novel_NIR_678	chr1	185064518	185073420	+	185064460	185073420	A5SS	ENSMUST00000110965.2	novel	0.00	0	5	0	5	n	0.27	3	8	3	8	y	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.07	1	13	1	13	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.10	1	9	1	9	n	0.00	0	8	0	8	n	ENSMUSG00000026617.17	Bpnt1	chr1	protein_coding	3'(2'), 5'-bisphosphate nucleotidase 1
novel_NIR_679	chr1	185081032	185084383	+	185081032	185082034	A3SS&ES	ENSMUST00000210277.2	novel	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.29	4	10	4	10	y	0.00	0	3	0	3	n	0.00	0	15	0	15	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	ENSMUSG00000026617.17	Bpnt1	chr1	protein_coding	3'(2'), 5'-bisphosphate nucleotidase 1
novel_NIR_680	chr1	185188403	185188549	+	185187876	185188549	A5SS	ENSMUST00000061093.7	novel	0.04	1	26	1	26	n	0.00	0	13	0	13	n	0.10	6	57	6	57	n	0.06	2	29	2	29	n	0.06	3	46	3	46	n	0.04	1	22	1	22	n	0.12	6	46	6	46	n	0.04	1	27	1	27	n	0.00	0	33	0	33	n	0.00	0	32	0	32	n	0.09	3	29	3	29	n	0.15	5	29	5	29	y	ENSMUSG00000026614.8	Slc30a10	chr1	protein_coding	solute carrier family 30, member 10
novel_NIR_681	chr1	189855605	189879149	-	189855602	189879149	A3SS	ENSMUST00000175916.8	novel	0.07	4	54	4	54	n	0.08	3	34	3	34	n	0.06	9	139	9	139	n	0.03	3	109	3	109	n	0.04	6	135	6	135	n	0.16	17	87	17	87	y	0.07	8	114	8	114	n	0.06	6	99	6	99	n	0.08	6	73	6	73	n	0.10	13	115	13	115	n	0.08	6	67	6	67	n	0.06	5	83	5	83	n	ENSMUSG00000010175.14	Prox1	chr1	protein_coding	prospero homeobox 1
novel_NIR_682	chr1	189894510	189895743	-	189894510	189901360	A5SS	ENSMUST00000010319.14	novel	0.00	0	6	0	6	n	0.50	2	2	2	2	y	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	22	0	22	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	ENSMUSG00000010175.14	Prox1	chr1	protein_coding	prospero homeobox 1
novel_NIR_683	chr1	189894510	189895743	-	189894510	189902225	A5SS	ENSMUST00000177288.4	novel	0.00	0	7	0	7	n	1.00	2	0	2	0	y	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	ENSMUSG00000010175.14	Prox1	chr1	protein_coding	prospero homeobox 1
novel_NIR_684	chr1	189894510	189896625	-	189894510	189901360	A5SS	ENSMUST00000010319.14	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	22	0	22	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.22	2	7	2	7	y	ENSMUSG00000010175.14	Prox1	chr1	protein_coding	prospero homeobox 1
novel_NIR_685	chr1	189894510	189896625	-	189894510	189902225	A5SS	ENSMUST00000177288.4	novel	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.33	2	4	2	4	y	ENSMUSG00000010175.14	Prox1	chr1	protein_coding	prospero homeobox 1
novel_NIR_686	chr1	189894510	189899820	-	189894510	189901360	A5SS	ENSMUST00000010319.14	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.08	1	12	1	12	n	0.19	5	22	5	22	y	0.17	1	5	1	5	n	0.00	0	11	0	11	n	0.23	3	10	3	10	y	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.12	1	7	1	7	n	ENSMUSG00000010175.14	Prox1	chr1	protein_coding	prospero homeobox 1
novel_NIR_687	chr1	189894510	189899820	-	189894510	189902225	A5SS	ENSMUST00000177288.4	novel	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	11	0	11	n	0.10	1	9	1	9	n	0.62	5	3	5	3	y	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.25	3	9	3	9	y	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.20	1	4	1	4	n	ENSMUSG00000010175.14	Prox1	chr1	protein_coding	prospero homeobox 1
novel_NIR_688	chr1	189894510	189900703	-	189894510	189902225	A5SS	ENSMUST00000177288.4	novel	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.40	2	3	2	3	y	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	ENSMUSG00000010175.14	Prox1	chr1	protein_coding	prospero homeobox 1
novel_NIR_689	chr1	189894510	189904511	-	189894510	189901360	5pMXE	ENSMUST00000010319.14	novel	0.25	2	6	2	6	y	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.04	1	22	1	22	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.17	2	10	2	10	y	0.33	2	4	2	4	y	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	ENSMUSG00000010175.14	Prox1	chr1	protein_coding	prospero homeobox 1
novel_NIR_690	chr1	189894510	189904511	-	189894510	189902225	5pMXE	ENSMUST00000177288.4	novel	0.22	2	7	2	7	y	-	-	-	-	-	-	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.18	2	9	2	9	y	0.25	2	6	2	6	y	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	ENSMUSG00000010175.14	Prox1	chr1	protein_coding	prospero homeobox 1
novel_NIR_691	chr1	189894510	189905901	-	189894510	189901360	5pMXE	ENSMUST00000010319.14	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	22	0	22	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.22	2	7	2	7	y	ENSMUSG00000010175.14	Prox1	chr1	protein_coding	prospero homeobox 1
novel_NIR_692	chr1	189894510	189905901	-	189894510	189902225	5pMXE	ENSMUST00000177288.4	novel	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.33	2	4	2	4	y	ENSMUSG00000010175.14	Prox1	chr1	protein_coding	prospero homeobox 1
novel_NIR_693	chr1	189894510	189906655	-	189894510	189901360	5pMXE	ENSMUST00000010319.14	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.08	1	12	1	12	n	0.04	1	22	1	22	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.11	1	8	1	8	n	0.50	1	1	1	1	n	0.22	2	7	2	7	y	ENSMUSG00000010175.14	Prox1	chr1	protein_coding	prospero homeobox 1
novel_NIR_694	chr1	189894510	189906655	-	189894510	189902225	5pMXE	ENSMUST00000177288.4	novel	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	11	0	11	n	0.10	1	9	1	9	n	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.11	1	8	1	8	n	0.14	1	6	1	6	n	0.33	2	4	2	4	y	ENSMUSG00000010175.14	Prox1	chr1	protein_coding	prospero homeobox 1
novel_NIR_695	chr1	189896000	189902225	-	189894510	189902225	A3SS	ENSMUST00000177288.4	novel	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.25	2	6	2	6	y	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	ENSMUSG00000010175.14	Prox1	chr1	protein_coding	prospero homeobox 1
novel_NIR_696	chr1	189902625	189911651	+	189902625	189948779	A3SS	ENSMUST00000110279.4	novel	0.11	3	24	3	24	n	0.15	5	28	5	28	n	0.13	8	53	8	53	n	0.27	9	24	9	24	y	0.31	15	34	15	34	y	0.21	6	23	6	23	y	0.00	0	30	0	30	n	0.22	6	21	6	21	y	0.21	6	23	6	23	y	0.07	3	41	3	41	n	0.07	3	37	3	37	n	0.15	4	23	4	23	y	ENSMUSG00000079045.4	Prox1os	chr1	lncRNA	prospero homeobox 1, opposite strand
novel_NIR_697	chr1	189902625;189930372	189930293;189948779	+	189902625	189948779	cassetteExon	ENSMUST00000110279.4	novel	0.46	20.5	24	19;22	24	y	0.33	13.5	28	15;12	28	y	0.37	30.5	53	32;29	53	y	0.41	17.0	24	22;12	24	y	0.46	29.0	34	37;21	34	y	0.45	19.0	23	14;24	23	y	0.44	24.0	30	20;28	30	y	0.45	17.5	21	18;17	21	y	0.45	18.5	23	20;17	23	y	0.46	34.5	41	30;39	41	y	0.47	32.5	37	35;30	37	y	0.26	8.0	23	7;9	23	y	ENSMUSG00000079045.4	Prox1os	chr1	lncRNA	prospero homeobox 1, opposite strand
novel_NIR_698	chr1	189904320	189948779	+	189902625	189948779	A5SS	ENSMUST00000110279.4	novel	0.00	0	24	0	24	n	0.00	0	28	0	28	n	0.00	0	53	0	53	n	0.00	0	24	0	24	n	0.00	0	34	0	34	n	0.00	0	23	0	23	n	0.06	2	30	2	30	n	0.00	0	21	0	21	n	0.15	4	23	4	23	y	0.05	2	41	2	41	n	0.05	2	37	2	37	n	0.00	0	23	0	23	n	ENSMUSG00000079045.4	Prox1os	chr1	lncRNA	prospero homeobox 1, opposite strand
novel_NIR_699	chr1	190505900	190515761	-	190505900;190514827	190514732;190515761	ES	ENSMUST00000160889.8	novel	0.00	0	13.5	0	16;11	n	0.00	0	10.0	0	8;12	n	0.22	3	10.5	3	6;15	y	0.00	0	13.5	0	13;14	n	0.00	0	10.0	0	7;13	n	0.10	1	9.5	1	8;11	n	0.00	0	16.0	0	15;17	n	0.00	0	10.0	0	10;10	n	0.00	0	16.0	0	15;17	n	0.00	0	17.0	0	22;12	n	0.00	0	16.0	0	13;19	n	0.00	0	24.0	0	15;33	n	ENSMUSG00000089872.11	Rps6kc1	chr1	protein_coding	ribosomal protein S6 kinase polypeptide 1
novel_NIR_700	chr1	190615599	190617531	-	190604148	190617531	A3SS	ENSMUST00000159624.8	novel	0.00	0	12	0	12	n	0.14	2	12	2	12	n	0.00	0	19	0	19	n	0.09	1	10	1	10	n	0.05	1	18	1	18	n	0.00	0	7	0	7	n	0.06	1	15	1	15	n	0.29	2	5	2	5	y	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.21	3	11	3	11	y	0.19	3	13	3	13	y	ENSMUSG00000089872.11	Rps6kc1	chr1	protein_coding	ribosomal protein S6 kinase polypeptide 1
novel_NIR_701	chr1	190637315	190638701	-	190637315	190643753	A5SS	ENSMUST00000159624.8	novel	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.06	1	17	1	17	n	0.20	2	8	2	8	y	0.00	0	15	0	15	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.50	1	1	1	1	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	15	0	15	n	ENSMUSG00000089872.11	Rps6kc1	chr1	protein_coding	ribosomal protein S6 kinase polypeptide 1
novel_NIR_702	chr1	190661443	190665064	+	190658931	190665064	A5SS	ENSMUST00000027947.13	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	14	0	14	0	y	1.00	1	0	1	0	n	1.00	8	0	8	0	y	1.00	5	0	5	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	10	0	10	0	y	ENSMUSG00000026634.17	Angel2	chr1	protein_coding	angel homolog 2
novel_NIR_703	chr1	190661443	190665064	+	190660914	190665064	A5SS	ENSMUST00000110899.7	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	14	0	14	0	y	1.00	1	0	1	0	n	1.00	8	0	8	0	y	1.00	5	0	5	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	10	0	10	0	y	ENSMUSG00000026634.17	Angel2	chr1	protein_coding	angel homolog 2
novel_NIR_704	chr1	190661443	190665064	+	190660955	190665064	A5SS	ENSMUST00000137608.8	novel	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.31	4	9	4	9	y	0.43	3	4	3	4	y	0.67	14	7	14	7	y	0.50	1	1	1	1	n	0.33	8	16	8	16	y	0.83	5	1	5	1	y	0.33	3	6	3	6	y	0.00	0	4	0	4	n	0.29	2	5	2	5	y	0.77	10	3	10	3	y	ENSMUSG00000026634.17	Angel2	chr1	protein_coding	angel homolog 2
novel_NIR_705	chr1	190661443	190665064	+	190661101	190665064	A5SS	ENSMUST00000135364.7	novel	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.80	4	1	4	1	y	0.43	3	4	3	4	y	0.82	14	3	14	3	y	0.33	1	2	1	2	n	0.73	8	3	8	3	y	0.62	5	3	5	3	y	0.75	3	1	3	1	y	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.50	10	10	10	10	y	ENSMUSG00000026634.17	Angel2	chr1	protein_coding	angel homolog 2
novel_NIR_706	chr1	190661443	190665064	+	190661296	190665064	A5SS	ENSMUST00000134187.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.80	4	1	4	1	y	0.75	3	1	3	1	y	1.00	14	0	14	0	y	0.50	1	1	1	1	n	1.00	8	0	8	0	y	0.83	5	1	5	1	y	0.50	3	3	3	3	y	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.91	10	1	10	1	y	ENSMUSG00000026634.17	Angel2	chr1	protein_coding	angel homolog 2
novel_NIR_707	chr1	190747695	190752633	-	190747695	190757574	A5SS	ENSMUST00000192666.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000066595.10	Flvcr1	chr1	protein_coding	feline leukemia virus subgroup C cellular receptor 1
novel_NIR_708	chr1	190752759	190753273	-	190747695	190753273	A3SS	ENSMUST00000085635.6	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000066595.10	Flvcr1	chr1	protein_coding	feline leukemia virus subgroup C cellular receptor 1
novel_NIR_709	chr1	190785208	190787053	-	190781559	190787053	A3SS	ENSMUST00000085633.12	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	0.50	1	1	1	1	n	ENSMUSG00000026632.18	Tatdn3	chr1	protein_coding	TatD DNase domain containing 3
novel_NIR_710	chr1	190785208	190787053	-	190785169	190787053	A3SS	ENSMUST00000110893.10	novel	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.18	2	9	2	9	y	0.05	1	18	1	18	n	0.00	0	6	0	6	n	0.00	0	21	0	21	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	21	0	21	n	0.14	1	6	1	6	n	0.04	1	22	1	22	n	ENSMUSG00000026632.18	Tatdn3	chr1	protein_coding	TatD DNase domain containing 3
novel_NIR_711	chr1	191091265	191094446	-	191091276	191094446	A3SS	ENSMUST00000191925.2	novel	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	6	0	6	0	y	1.00	2	0	2	0	y	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.91	20	2	20	2	y	0.83	5	1	5	1	y	1.00	7	0	7	0	y	ENSMUSG00000026626.12	Ppp2r5a	chr1	protein_coding	protein phosphatase 2, regulatory subunit B', alpha
novel_NIR_712	chr1	191104863	191127971	-	191104863	191117491	5pMXE	ENSMUST00000195605.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000026626.12	Ppp2r5a	chr1	protein_coding	protein phosphatase 2, regulatory subunit B', alpha
novel_NIR_713	chr1	191104863	191127971	-	191104863	191131150	A5SS	ENSMUST00000195859.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000026626.12	Ppp2r5a	chr1	protein_coding	protein phosphatase 2, regulatory subunit B', alpha
novel_NIR_714	chr1	191561629	191563270	+	191561629	191561997	3pMXE	ENSMUST00000136733.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000026622.16	Nek2	chr1	protein_coding	NIMA (never in mitosis gene a)-related expressed kinase 2
novel_NIR_715	chr1	191561629	191563270	+	191561629	191563249	A3SS	ENSMUST00000027931.8	novel	0.00	0	5	0	5	n	1.00	1	0	1	0	n	0.25	2	6	2	6	y	0.20	1	4	1	4	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	1.00	2	0	2	0	y	0.33	2	4	2	4	y	0.00	0	4	0	4	n	0.50	1	1	1	1	n	ENSMUSG00000026622.16	Nek2	chr1	protein_coding	NIMA (never in mitosis gene a)-related expressed kinase 2
novel_NIR_716	chr1	191688872	191715211	+	191709670	191715211	5pMXE	ENSMUST00000180463.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000049353.18	Rd3	chr1	protein_coding	retinal degeneration 3
novel_NIR_717	chr1	191688872	191715211	+	191710758	191715211	5pMXE	ENSMUST00000175680.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000049353.18	Rd3	chr1	protein_coding	retinal degeneration 3
novel_NIR_718	chr1	191741629	191742418	-	191741629	191742390	A5SS	ENSMUST00000195815.3	novel	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	17	0	17	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.20	2	8	2	8	y	0.30	3	7	3	7	y	ENSMUSG00000026637.15	Traf5	chr1	protein_coding	TNF receptor-associated factor 5
novel_NIR_719	chr1	191786167	191786401	-	191786167	191792944	A5SS	ENSMUST00000192866.6	novel	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.33	1	2	1	2	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	ENSMUSG00000037395.17	Rcor3	chr1	protein_coding	REST corepressor 3
novel_NIR_720	chr1	191786167	191786401	-	191786167	191800569	A5SS	ENSMUST00000192222.6	novel	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.00	0	4	0	4	n	ENSMUSG00000037395.17	Rcor3	chr1	protein_coding	REST corepressor 3
novel_NIR_721	chr1	191808660	191810166	-	191808667	191810166	A3SS	ENSMUST00000110849.10	novel	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.17	2	10	2	10	y	0.00	0	1	0	1	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	15	0	15	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	ENSMUSG00000037395.17	Rcor3	chr1	protein_coding	REST corepressor 3
novel_NIR_722	chr1	191821822	191829514	+	191828836	191829514	A5SS&ES	ENSMUST00000180598.3	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	ENSMUSG00000097316.3	Gm10516	chr1	lncRNA	predicted gene 10516
novel_NIR_723	chr1	191822703	191828734	+	191821361	191828734	A5SS	ENSMUST00000180598.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	ENSMUSG00000097316.3	Gm10516	chr1	lncRNA	predicted gene 10516
novel_NIR_724	chr1	191822824	191829514	+	191828836	191829514	A5SS&ES	ENSMUST00000180598.3	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	3	3	3	3	y	0.60	3	2	3	2	y	0.00	0	2	0	2	n	ENSMUSG00000097316.3	Gm10516	chr1	lncRNA	predicted gene 10516
novel_NIR_725	chr1	191828836	191829511	+	191821814	191829511	A5SS	ENSMUST00000195083.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000097316.3	Gm10516	chr1	lncRNA	predicted gene 10516
novel_NIR_726	chr1	191828836	191829511	+	191828836	191829514	A3SS	ENSMUST00000180598.3	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000097316.3	Gm10516	chr1	lncRNA	predicted gene 10516
novel_NIR_727	chr1	192839088	192839524	+	192835607	192839524	A5SS	ENSMUST00000076521.7	novel	0.00	0	19	0	19	n	0.00	0	16	0	16	n	0.00	0	45	0	45	n	0.00	0	36	0	36	n	0.00	0	38	0	38	n	0.19	3	13	3	13	y	0.00	0	18	0	18	n	0.00	0	23	0	23	n	0.00	0	12	0	12	n	0.00	0	40	0	40	n	0.04	1	23	1	23	n	0.06	1	15	1	15	n	ENSMUSG00000026638.16	Irf6	chr1	protein_coding	interferon regulatory factor 6
novel_NIR_728	chr1	192904536	192922539	-	192911979	192922539	3pMXE	ENSMUST00000161406.2	novel	0.05	1	18	1	18	n	0.00	0	23	0	23	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.06	1	16	1	16	n	1.00	1	0	1	0	n	0.04	1	25	1	25	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.11	5	41	5	41	n	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000016194.15	Hsd11b1	chr1	protein_coding	hydroxysteroid 11-beta dehydrogenase 1
novel_NIR_729	chr1	192904536	192922539	-	192920905	192922539	3pMXE	ENSMUST00000162842.3	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.29	2	5	2	5	y	0.12	1	7	1	7	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.71	5	2	5	2	y	0.60	3	2	3	2	y	0.00	0	2	0	2	n	ENSMUSG00000016194.15	Hsd11b1	chr1	protein_coding	hydroxysteroid 11-beta dehydrogenase 1
novel_NIR_730	chr1	192920134	192922539	-	192911979	192922539	A3SS	ENSMUST00000161406.2	novel	0.05	1	18	1	18	n	0.04	1	23	1	23	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.06	1	16	1	16	n	-	-	-	-	-	-	0.00	0	25	0	25	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	41	0	41	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000016194.15	Hsd11b1	chr1	protein_coding	hydroxysteroid 11-beta dehydrogenase 1
novel_NIR_731	chr1	192920134	192922539	-	192920905	192922539	3pMXE	ENSMUST00000162842.3	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.29	2	5	2	5	y	0.12	1	7	1	7	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000016194.15	Hsd11b1	chr1	protein_coding	hydroxysteroid 11-beta dehydrogenase 1
novel_NIR_732	chr1	192924618	192946256	-	192924596	192946256	A3SS	ENSMUST00000161737.8	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	12	0	12	n	-	-	-	-	-	-	0.22	2	7	2	7	y	1.00	2	0	2	0	y	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	ENSMUSG00000016194.15	Hsd11b1	chr1	protein_coding	hydroxysteroid 11-beta dehydrogenase 1
novel_NIR_733	chr1	194768588	194770995	-	194768588	194774407	A5SS	ENSMUST00000162650.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	3	0	3	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000016493.14	Cd46	chr1	protein_coding	CD46 antigen, complement regulatory protein
novel_NIR_734	chr1	194812317	194813673	-	194812317	194813368	5pMXE	ENSMUST00000194111.6	novel	0.33	1	2	1	2	n	0.29	2	5	2	5	y	0.33	2	4	2	4	y	0.25	1	3	1	3	n	0.38	3	5	3	5	y	0.00	0	2	0	2	n	0.29	2	5	2	5	y	0.20	1	4	1	4	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.50	5	5	5	5	y	0.50	3	3	3	3	y	ENSMUSG00000016481.16	Cr1l	chr1	protein_coding	complement component (3b/4b) receptor 1-like
novel_NIR_735	chr1	194812317	194813673	-	194812317	194813396	5pMXE	ENSMUST00000193829.2	novel	0.50	1	1	1	1	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	0.33	1	2	1	2	n	0.43	3	4	3	4	y	-	-	-	-	-	-	1.00	2	0	2	0	y	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.83	5	1	5	1	y	0.50	3	3	3	3	y	ENSMUSG00000016481.16	Cr1l	chr1	protein_coding	complement component (3b/4b) receptor 1-like
novel_NIR_736	chr1	194812317	194813768	-	194812317	194813368	5pMXE	ENSMUST00000194111.6	novel	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.50	5	5	5	5	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.10	1	9	1	9	n	0.00	0	5	0	5	n	0.25	1	3	1	3	n	ENSMUSG00000016481.16	Cr1l	chr1	protein_coding	complement component (3b/4b) receptor 1-like
novel_NIR_737	chr1	194812317	194813768	-	194812317	194813396	5pMXE	ENSMUST00000193829.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	1.00	5	0	5	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	ENSMUSG00000016481.16	Cr1l	chr1	protein_coding	complement component (3b/4b) receptor 1-like
novel_NIR_738	chr1	194812317	194813768	-	194812317	194813810	A5SS	ENSMUST00000191775.2	novel	0.00	0	16	0	16	n	0.00	0	20	0	20	n	0.00	0	25	0	25	n	0.00	0	30	0	30	n	0.00	0	31	0	31	n	0.00	0	19	0	19	n	0.20	5	20	5	20	y	0.00	0	20	0	20	n	0.00	0	30	0	30	n	0.04	1	24	1	24	n	0.00	0	32	0	32	n	0.03	1	28	1	28	n	ENSMUSG00000016481.16	Cr1l	chr1	protein_coding	complement component (3b/4b) receptor 1-like
novel_NIR_739	chr1	20128934	20140595	-	20128934	20140602	A5SS	ENSMUST00000088448.12	novel	0.00	0	5	0	5	n	0.38	3	5	3	5	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.17	1	5	1	5	n	ENSMUSG00000043760.17	Pkhd1	chr1	protein_coding	polycystic kidney and hepatic disease 1
novel_NIR_740	chr1	20188171	20202149	-	20188171	20268242	A5SS	ENSMUST00000088448.12	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.33	2	4	2	4	y	0.00	0	1	0	1	n	0.75	6	2	6	2	y	1.00	2	0	2	0	y	0.67	4	2	4	2	y	1.00	7	0	7	0	y	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000043760.17	Pkhd1	chr1	protein_coding	polycystic kidney and hepatic disease 1
novel_NIR_741	chr1	20522821	20573166	-	20520601	20573166	A3SS	ENSMUST00000088448.12	novel	0.50	3	3	3	3	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000043760.17	Pkhd1	chr1	protein_coding	polycystic kidney and hepatic disease 1
novel_NIR_742	chr1	21320082	21320873	+	21320082	21324908	A3SS	ENSMUST00000124990.3	novel	0.03	9	265	9	265	n	0.03	5	143	5	143	n	0.11	2	17	2	17	n	0.02	4	233	4	233	n	0.04	7	189	7	189	n	0.00	0	19	0	19	n	0.05	14	246	14	246	n	0.15	6	33	6	33	y	0.05	13	238	13	238	n	0.04	18	464	18	464	n	0.03	11	311	11	311	n	0.03	8	285	8	285	n	ENSMUSG00000025934.16	Gsta3	chr1	protein_coding	glutathione S-transferase, alpha 3
novel_NIR_743	chr1	21320082	21329079	+	21320082	21324908	A3SS&ES	ENSMUST00000124990.3	novel	0.00	0	265	0	265	n	0.00	0	143	0	143	n	0.00	0	17	0	17	n	0.15	42	233	42	233	y	0.00	0	189	0	189	n	0.00	0	19	0	19	n	0.00	0	246	0	246	n	0.00	0	33	0	33	n	0.00	0	238	0	238	n	0.00	0	464	0	464	n	0.00	0	311	0	311	n	0.00	0	285	0	285	n	ENSMUSG00000025934.16	Gsta3	chr1	protein_coding	glutathione S-transferase, alpha 3
novel_NIR_744	chr1	23417888	23418053	-	23417885	23418053	A3SS	ENSMUST00000027343.6	novel	0.14	4	24	4	24	n	0.43	12	16	12	16	y	0.32	8	17	8	17	y	0.35	16	30	16	30	y	0.30	10	23	10	23	y	0.27	7	19	7	19	y	0.17	5	24	5	24	y	0.33	4	8	4	8	y	0.23	7	24	7	24	y	0.39	18	28	18	28	y	0.17	5	25	5	25	y	0.44	25	32	25	32	y	ENSMUSG00000026158.12	Ogfrl1	chr1	protein_coding	opioid growth factor receptor-like 1
novel_NIR_745	chr1	24069021	24071744	-	24069021;24069977	24069823;24071744	ES	ENSMUST00000188712.7	novel	0.00	0	9.5	0	14;5	n	0.12	1	7.5	1	11;4	n	0.09	4	42.5	4	36;49	n	0.05	1	20.0	1	25;15	n	0.04	1	26.5	1	27;26	n	0.00	0	16.5	0	18;15	n	0.00	0	20.5	0	18;23	n	0.00	0	24.0	0	27;21	n	0.00	0	10.5	0	12;9	n	0.22	4	14.0	4	11;17	y	0.00	0	10.0	0	11;9	n	0.11	3	24.5	3	28;21	n	ENSMUSG00000026153.16	Fam135a	chr1	protein_coding	family with sequence similarity 135, member A
novel_NIR_746	chr1	24069021	24071744	-	24069977	24071744	A3SS&ES	ENSMUST00000027337.15	novel	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.08	4	49	4	49	n	0.06	1	15	1	15	n	0.04	1	26	1	26	n	0.00	0	15	0	15	n	0.00	0	23	0	23	n	0.00	0	21	0	21	n	0.00	0	9	0	9	n	0.19	4	17	4	17	y	0.00	0	9	0	9	n	0.12	3	21	3	21	n	ENSMUSG00000026153.16	Fam135a	chr1	protein_coding	family with sequence similarity 135, member A
novel_NIR_747	chr1	24069609	24071744	-	24069609;24069977	24069823;24071744	ES	ENSMUST00000027337.15	novel	0.62	4	2.5	4	0;5	y	0.00	0	2.0	0	0;4	n	0.04	1	26.5	1	4;49	n	0.11	1	8.0	1	1;15	n	0.12	2	14.0	2	2;26	n	0.00	0	9.0	0	3;15	n	0.00	0	11.5	0	0;23	n	0.08	1	11.0	1	1;21	n	0.00	0	6.5	0	4;9	n	0.00	0	10.0	0	3;17	n	0.00	0	6.5	0	4;9	n	0.07	1	12.5	1	4;21	n	ENSMUSG00000026153.16	Fam135a	chr1	protein_coding	family with sequence similarity 135, member A
novel_NIR_748	chr1	24069609	24071744	-	24069977	24071744	A3SS&ES	ENSMUST00000188712.7	novel	0.44	4	5	4	5	y	0.00	0	4	0	4	n	0.02	1	49	1	49	n	0.06	1	15	1	15	n	0.07	2	26	2	26	n	0.00	0	15	0	15	n	0.00	0	23	0	23	n	0.05	1	21	1	21	n	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.05	1	21	1	21	n	ENSMUSG00000026153.16	Fam135a	chr1	protein_coding	family with sequence similarity 135, member A
novel_NIR_749	chr1	24071817	24082030	-	24071817	24083195	A5SS	ENSMUST00000188712.7	novel	0.17	2	10	2	10	y	0.00	0	7	0	7	n	0.00	0	44	0	44	n	0.08	1	11	1	11	n	0.12	3	22	3	22	n	0.00	0	18	0	18	n	0.00	0	14	0	14	n	0.00	0	19	0	19	n	0.00	0	13	0	13	n	0.00	0	22	0	22	n	0.00	0	14	0	14	n	0.03	1	29	1	29	n	ENSMUSG00000026153.16	Fam135a	chr1	protein_coding	family with sequence similarity 135, member A
novel_NIR_750	chr1	24082105	24083195	-	24071817	24083195	A3SS	ENSMUST00000188712.7	novel	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	44	0	44	n	0.15	2	11	2	11	n	0.00	0	22	0	22	n	0.05	1	18	1	18	n	0.18	3	14	3	14	y	0.05	1	19	1	19	n	0.13	2	13	2	13	n	0.00	0	22	0	22	n	0.00	0	14	0	14	n	0.00	0	29	0	29	n	ENSMUSG00000026153.16	Fam135a	chr1	protein_coding	family with sequence similarity 135, member A
novel_NIR_751	chr1	24097855	24106980	-	24096586	24106980	A3SS	ENSMUST00000188712.7	novel	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	34	0	34	n	0.00	0	16	0	16	n	0.00	0	36	0	36	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.29	2	5	2	5	y	0.00	0	19	0	19	n	0.00	0	6	0	6	n	0.00	0	19	0	19	n	ENSMUSG00000026153.16	Fam135a	chr1	protein_coding	family with sequence similarity 135, member A
novel_NIR_752	chr1	24097952	24106980	-	24096586	24106980	A3SS	ENSMUST00000188712.7	novel	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.03	1	34	1	34	n	0.00	0	16	0	16	n	0.00	0	36	0	36	n	0.25	2	6	2	6	y	0.07	1	13	1	13	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	19	0	19	n	0.00	0	6	0	6	n	0.00	0	19	0	19	n	ENSMUSG00000026153.16	Fam135a	chr1	protein_coding	family with sequence similarity 135, member A
novel_NIR_753	chr1	24107059	24139142	-	24125692	24139142	A3SS&ES	ENSMUST00000187752.7	novel	0.14	1	6	1	6	n	-	-	-	-	-	-	0.00	0	22	0	22	n	0.25	3	9	3	9	y	0.12	3	23	3	23	n	0.10	1	9	1	9	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.08	1	11	1	11	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	ENSMUSG00000026153.16	Fam135a	chr1	protein_coding	family with sequence similarity 135, member A
novel_NIR_754	chr1	30845023	30845326	-	30845023	30845250	A5SS	ENSMUST00000186733.7	novel	0.00	0	25	0	25	n	0.00	0	23	0	23	n	0.00	0	61	0	61	n	0.19	8	35	8	35	y	0.00	0	54	0	54	n	0.00	0	30	0	30	n	0.00	0	56	0	56	n	0.00	0	35	0	35	n	0.00	0	40	0	40	n	0.00	0	55	0	55	n	0.00	0	27	0	27	n	0.00	0	48	0	48	n	ENSMUSG00000048874.16	Phf3	chr1	protein_coding	PHD finger protein 3
novel_NIR_755	chr1	30870640	30912659	-	30863600	30912659	A3SS	ENSMUST00000186105.7	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.25	1	3	1	3	n	-	-	-	-	-	-	0.20	1	4	1	4	n	ENSMUSG00000048874.16	Phf3	chr1	protein_coding	PHD finger protein 3
novel_NIR_756	chr1	30870640	30912659	-	30870640;30902336	30902068;30912659	ES	ENSMUST00000188780.2	novel	0.00	0	4.5	0	1;8	n	0.00	0	2.5	0	1;4	n	0.10	1	9.5	1	4;15	n	0.00	0	3.5	0	2;5	n	0.00	0	6.0	0	2;10	n	0.29	1	2.5	1	3;2	n	0.22	1	3.5	1	3;4	n	0.00	0	6.0	0	3;9	n	0.50	2	2.0	2	0;4	y	0.22	1	3.5	1	1;6	n	0.00	0	4.0	0	2;6	n	0.09	1	10.5	1	8;13	n	ENSMUSG00000048874.16	Phf3	chr1	protein_coding	PHD finger protein 3
novel_NIR_757	chr1	30870640	30912659	-	30902336	30912659	A3SS&ES	ENSMUST00000191064.7	novel	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.06	1	15	1	15	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.33	1	2	1	2	n	0.20	1	4	1	4	n	0.00	0	9	0	9	n	0.33	2	4	2	4	y	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.07	1	13	1	13	n	ENSMUSG00000048874.16	Phf3	chr1	protein_coding	PHD finger protein 3
novel_NIR_758	chr1	30876347	30912659	-	30863600	30912659	A3SS	ENSMUST00000186105.7	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	6	0	6	0	y	0.50	1	1	1	1	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.80	4	1	4	1	y	0.00	0	1	0	1	n	0.60	3	2	3	2	y	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000048874.16	Phf3	chr1	protein_coding	PHD finger protein 3
novel_NIR_759	chr1	30876347	30912659	-	30876347	30902068	5pMXE	ENSMUST00000088310.10	novel	0.50	1	1	1	1	n	0.00	0	7	0	7	n	0.29	6	15	6	15	y	0.09	1	10	1	10	n	0.06	1	17	1	17	n	0.00	0	13	0	13	n	0.24	4	13	4	13	y	0.00	0	13	0	13	n	0.21	3	11	3	11	y	0.04	1	27	1	27	n	0.00	0	9	0	9	n	0.00	0	20	0	20	n	ENSMUSG00000048874.16	Phf3	chr1	protein_coding	PHD finger protein 3
novel_NIR_760	chr1	30876347	30912659	-	30876347;30902336	30902068;30912659	ES	ENSMUST00000186733.7	novel	0.18	1	4.5	1	1;8	n	0.00	0	5.5	0	7;4	n	0.29	6	15.0	6	15;15	y	0.12	1	7.5	1	10;5	n	0.07	1	13.5	1	17;10	n	0.00	0	7.5	0	13;2	n	0.32	4	8.5	4	13;4	y	0.00	0	11.0	0	13;9	n	0.29	3	7.5	3	11;4	y	0.06	1	16.5	1	27;6	n	0.00	0	7.5	0	9;6	n	0.00	0	16.5	0	20;13	n	ENSMUSG00000048874.16	Phf3	chr1	protein_coding	PHD finger protein 3
novel_NIR_761	chr1	30876347	30912659	-	30902336	30912659	A3SS&ES	ENSMUST00000188780.2	novel	0.11	1	8	1	8	n	0.00	0	4	0	4	n	0.29	6	15	6	15	y	0.17	1	5	1	5	n	0.09	1	10	1	10	n	0.00	0	2	0	2	n	0.50	4	4	4	4	y	0.00	0	9	0	9	n	0.43	3	4	3	4	y	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	ENSMUSG00000048874.16	Phf3	chr1	protein_coding	PHD finger protein 3
novel_NIR_762	chr1	30985717	30988078	-	30985717	30988630	A5SS	ENSMUST00000076587.6	novel	0.00	0	22	0	22	n	0.00	0	14	0	14	n	0.09	6	59	6	59	n	0.00	0	38	0	38	n	0.00	0	34	0	34	n	0.00	0	28	0	28	n	0.00	0	31	0	31	n	0.21	6	23	6	23	y	0.00	0	17	0	17	n	0.00	0	34	0	34	n	0.00	0	14	0	14	n	0.00	0	28	0	28	n	ENSMUSG00000117310.3	Ptp4a1	chr1	protein_coding	protein tyrosine phosphatase 4a1
novel_NIR_763	chr1	30985717	30988078	-	30985720	30988078	A3SS	ENSMUST00000232841.2	novel	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.33	6	12	6	12	y	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.46	6	7	6	7	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000026064.17	Ptp4a1	chr1	protein_coding	protein tyrosine phosphatase 4a1
novel_NIR_764	chr1	31060044	31083892	-	31060044	31086666	A5SS	ENSMUST00000233331.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000086727.9	4931428L18Rik	chr1	protein_coding	RIKEN cDNA 4931428L18 gene
novel_NIR_765	chr1	31060044	31083892	-	31060044	31101116	A5SS	ENSMUST00000187892.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000086727.9	4931428L18Rik	chr1	protein_coding	RIKEN cDNA 4931428L18 gene
novel_NIR_766	chr1	31082175	31082443	+	31082175	31082380	A3SS	ENSMUST00000191364.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000100237.2	Gm28644	chr1	lncRNA	predicted gene 28644
novel_NIR_767	chr1	33764100	33771311	+	33764100	33773783	A3SS	ENSMUST00000088287.10	novel	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.25	2	6	2	6	y	ENSMUSG00000004768.15	Rab23	chr1	protein_coding	RAB23, member RAS oncogene family
novel_NIR_768	chr1	33821762	33822122	-	33821275	33822122	A3SS	ENSMUST00000139143.8	novel	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	23	0	23	n	0.08	1	11	1	11	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.25	2	6	2	6	y	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	ENSMUSG00000042197.14	Zfp451	chr1	protein_coding	zinc finger protein 451
novel_NIR_769	chr1	33849725	33852808	-	33844500	33852808	A3SS	ENSMUST00000139143.8	novel	0.38	3	5	3	5	y	0.00	0	9	0	9	n	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	16	0	16	n	ENSMUSG00000042197.14	Zfp451	chr1	protein_coding	zinc finger protein 451
novel_NIR_770	chr1	34519840	34521794	-	34519840	34523869	A5SS	ENSMUST00000188292.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000101223.7	4930568A12Rik	chr1	lncRNA	RIKEN cDNA 4930568A12 gene
novel_NIR_771	chr1	34519840	34521794	-	34520194	34521794	3pMXE	ENSMUST00000186117.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000101223.7	4930568A12Rik	chr1	lncRNA	RIKEN cDNA 4930568A12 gene
novel_NIR_772	chr1	34858846	34858948	-	34858871	34858948	A3SS	ENSMUST00000170092.8	novel	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.15	2	11	2	11	y	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	ENSMUSG00000037503.13	Fam168b	chr1	protein_coding	family with sequence similarity 168, member B
novel_NIR_773	chr1	36407115	36407571	-	36407115	36408086	A5SS	ENSMUST00000188957.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000010453.13	Kansl3	chr1	protein_coding	KAT8 regulatory NSL complex subunit 3
novel_NIR_774	chr1	36407115	36407880	-	36407115	36408086	A5SS	ENSMUST00000188957.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000010453.13	Kansl3	chr1	protein_coding	KAT8 regulatory NSL complex subunit 3
novel_NIR_775	chr1	36407115	36407880	-	36407115	36408186	A5SS	ENSMUST00000010597.10	novel	0.00	0	17	0	17	n	0.15	2	11	2	11	y	0.00	0	16	0	16	n	0.00	0	17	0	17	n	0.00	0	16	0	16	n	0.00	0	5	0	5	n	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.06	1	16	1	16	n	0.05	1	20	1	20	n	0.00	0	15	0	15	n	0.00	0	19	0	19	n	ENSMUSG00000010453.13	Kansl3	chr1	protein_coding	KAT8 regulatory NSL complex subunit 3
novel_NIR_776	chr1	36462810	36463919	-	36459116	36463919	A3SS	ENSMUST00000192969.6	novel	0.36	5	9	5	9	y	0.00	0	5	0	5	n	0.50	3	3	3	3	y	1.00	1	0	1	0	n	0.55	6	5	6	5	y	-	-	-	-	-	-	0.14	1	6	1	6	n	-	-	-	-	-	-	0.69	9	4	9	4	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.15	2	11	2	11	y	ENSMUSG00000001143.14	Lman2l	chr1	protein_coding	lectin, mannose-binding 2-like
novel_NIR_777	chr1	36462810	36463919	-	36463584	36463919	A3SS	ENSMUST00000125304.8	novel	0.14	5	31	5	31	n	0.00	0	27	0	27	n	0.10	3	28	3	28	n	0.03	1	30	1	30	n	0.10	6	57	6	57	n	0.00	0	20	0	20	n	0.02	1	53	1	53	n	0.00	0	20	0	20	n	0.31	9	20	9	20	y	0.00	0	51	0	51	n	0.00	0	41	0	41	n	0.04	2	50	2	50	n	ENSMUSG00000001143.14	Lman2l	chr1	protein_coding	lectin, mannose-binding 2-like
novel_NIR_778	chr1	36539062	36544779	+	36539062	36544682	A3SS	ENSMUST00000153128.2	novel	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.22	2	7	2	7	y	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000037408.11	Cnnm4	chr1	protein_coding	cyclin M4
novel_NIR_779	chr1	36558176	36559162	+	36558176	36559159	A3SS	ENSMUST00000001166.14	novel	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.09	2	20	2	20	n	0.12	3	22	3	22	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.08	1	12	1	12	n	0.32	7	15	7	15	y	0.18	3	14	3	14	y	0.24	4	13	4	13	y	0.04	1	22	1	22	n	ENSMUSG00000001138.14	Cnnm3	chr1	protein_coding	cyclin M3
novel_NIR_780	chr1	36559308	36559497	+	36559308	36559600	A3SS	ENSMUST00000001166.14	novel	0.00	0	9	0	9	n	0.12	1	7	1	7	n	0.08	1	11	1	11	n	0.00	0	20	0	20	n	0.00	0	19	0	19	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.00	0	25	0	25	n	0.21	3	11	3	11	y	0.00	0	8	0	8	n	0.11	2	17	2	17	n	ENSMUSG00000001138.14	Cnnm3	chr1	protein_coding	cyclin M3
novel_NIR_781	chr1	36571110	36571193	-	36570902	36571193	A3SS	ENSMUST00000194853.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.17	2	10	2	10	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000067653.13	Ankrd23	chr1	protein_coding	ankyrin repeat domain 23
novel_NIR_782	chr1	36573518	36574665	-	36573518	36575578	A5SS	ENSMUST00000193083.6	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.60	9	6	9	6	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	15	0	15	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	ENSMUSG00000067653.13	Ankrd23	chr1	protein_coding	ankyrin repeat domain 23
novel_NIR_783	chr1	36573518	36574665	-	36573518	36578438	A5SS	ENSMUST00000207088.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.90	9	1	9	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000109510.2	Gm42417	chr1	protein_coding	predicted gene, 42417
novel_NIR_784	chr1	36581946	36586001	-	36581946	36585991	A5SS	ENSMUST00000207843.2	novel	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.33	4	8	4	8	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.17	1	5	1	5	n	ENSMUSG00000079610.10	Ankrd39	chr1	protein_coding	ankyrin repeat domain 39
novel_NIR_785	chr1	36581946	36586001	-	36581946	36586167	A5SS	ENSMUST00000001172.12	novel	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.44	4	5	4	5	y	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.17	1	5	1	5	n	0.12	1	7	1	7	n	ENSMUSG00000079610.10	Ankrd39	chr1	protein_coding	ankyrin repeat domain 39
novel_NIR_786	chr1	36595161	36595578	-	36595161	36595884	A5SS	ENSMUST00000191642.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026121.14	Sema4c	chr1	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C
novel_NIR_787	chr1	36595161	36595578	-	36595161	36596441	A5SS	ENSMUST00000195620.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026121.14	Sema4c	chr1	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C
novel_NIR_788	chr1	36595161	36595578	-	36595161	36597097	A5SS	ENSMUST00000191677.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.46	6	7	6	7	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026121.14	Sema4c	chr1	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C
novel_NIR_789	chr1	36730770	36730887	+	36730770	36731339	A3SS	ENSMUST00000193235.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.38	3	5	3	5	y	1.00	5	0	5	0	y	1.00	3	0	3	0	y	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000061518.12	Cox5b	chr1	protein_coding	cytochrome c oxidase subunit 5B
novel_NIR_790	chr1	36730770	36731273	+	36730770	36731339	A3SS	ENSMUST00000193235.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	5	0	5	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	2	0	2	0	y	0.00	0	5	0	5	n	ENSMUSG00000061518.12	Cox5b	chr1	protein_coding	cytochrome c oxidase subunit 5B
novel_NIR_791	chr1	36741681	36745626	-	36741681	36748887	A5SS	ENSMUST00000162684.3	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.20	1	4	1	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037351.10	Actr1b	chr1	protein_coding	ARP1 actin-related protein 1B, centractin beta
novel_NIR_792	chr1	36833276	36833885	-	36833279	36833885	A3SS	ENSMUST00000027290.12	novel	0.29	11	27	11	27	y	0.19	6	25	6	25	y	0.21	10	37	10	37	y	0.10	5	46	5	46	n	0.34	15	29	15	29	y	0.15	5	28	5	28	y	0.21	14	52	14	52	y	0.09	3	29	3	29	n	0.24	10	31	10	31	y	0.28	10	26	10	26	y	0.43	12	16	12	16	y	0.08	3	36	3	36	n	ENSMUSG00000026116.12	Tmem131	chr1	protein_coding	transmembrane protein 131
novel_NIR_793	chr1	36862234	36863038	-	36862234	36863486	A5SS	ENSMUST00000186486.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026116.12	Tmem131	chr1	protein_coding	transmembrane protein 131
novel_NIR_794	chr1	37065726	37074706	+	37065726	37074789	A3SS	ENSMUST00000117172.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000050122.20	Vwa3b	chr1	protein_coding	von Willebrand factor A domain containing 3B
novel_NIR_795	chr1	37065726	37074718	+	37065726	37074789	A3SS	ENSMUST00000117172.9	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.75	3	1	3	1	y	1.00	2	0	2	0	y	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.50	4	4	4	4	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	1	2	1	2	n	ENSMUSG00000050122.20	Vwa3b	chr1	protein_coding	von Willebrand factor A domain containing 3B
novel_NIR_796	chr1	37065726	37074718	+	37068509	37074718	5pMXE	ENSMUST00000124404.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000050122.20	Vwa3b	chr1	protein_coding	von Willebrand factor A domain containing 3B
novel_NIR_797	chr1	37090960	37102515	+	37090960;37099580	37099411;37102515	ES	ENSMUST00000117172.9	novel	0.00	0	5.5	0	5;6	n	0.00	0	5.5	0	1;10	n	0.00	0	6.0	0	3;9	n	0.00	0	3.5	0	3;4	n	0.00	0	8.0	0	7;9	n	0.00	0	6.0	0	7;5	n	0.20	2	8.0	2	9;7	y	0.00	0	13.0	0	14;12	n	0.00	0	3.0	0	1;5	n	0.00	0	7.5	0	9;6	n	0.40	1	1.5	1	3;0	n	0.00	0	3.0	0	2;4	n	ENSMUSG00000050122.20	Vwa3b	chr1	protein_coding	von Willebrand factor A domain containing 3B
novel_NIR_798	chr1	37410887	37411377	+	37410887	37411392	A3SS	ENSMUST00000027287.11	novel	0.20	2	8	2	8	y	0.00	0	1	0	1	n	0.00	0	30	0	30	n	0.00	0	11	0	11	n	0.00	0	32	0	32	n	0.00	0	11	0	11	n	0.00	0	26	0	26	n	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.00	0	18	0	18	n	0.00	0	7	0	7	n	0.00	0	19	0	19	n	ENSMUSG00000026113.18	Inpp4a	chr1	protein_coding	inositol polyphosphate-4-phosphatase, type I
novel_NIR_799	chr1	37410887	37411397	+	37410887	37411392	A3SS	ENSMUST00000027287.11	novel	0.20	2	8	2	8	y	0.00	0	1	0	1	n	0.00	0	30	0	30	n	0.00	0	11	0	11	n	0.00	0	32	0	32	n	0.00	0	11	0	11	n	0.00	0	26	0	26	n	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.00	0	18	0	18	n	0.00	0	7	0	7	n	0.00	0	19	0	19	n	ENSMUSG00000026113.18	Inpp4a	chr1	protein_coding	inositol polyphosphate-4-phosphatase, type I
novel_NIR_800	chr1	37419258	37426779	+	37419141	37426779	A5SS	ENSMUST00000058307.15	novel	0.40	2	3	2	3	y	0.00	0	5	0	5	n	0.18	2	9	2	9	y	0.50	3	3	3	3	y	0.36	4	7	4	7	y	0.27	3	8	3	8	y	0.41	7	10	7	10	y	0.12	1	7	1	7	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.78	7	2	7	2	y	0.50	9	9	9	9	y	ENSMUSG00000026113.18	Inpp4a	chr1	protein_coding	inositol polyphosphate-4-phosphatase, type I
novel_NIR_801	chr1	37419258	37426779	+	37419258;37422452	37422420;37426779	ES	ENSMUST00000132401.8	novel	0.40	2	3.0	2	2;4	y	-	-	-	-	-	-	0.14	2	12.0	2	6;18	n	0.46	3	3.5	3	1;6	y	0.38	4	6.5	4	2;11	y	0.60	3	2.0	3	0;4	y	0.74	7	2.5	7	0;5	y	0.22	1	3.5	1	0;7	n	0.00	0	1.0	0	0;2	n	0.00	0	4.0	0	2;6	n	1.00	7	0.0	7	0;0	y	0.69	9	4.0	9	0;8	y	ENSMUSG00000026113.18	Inpp4a	chr1	protein_coding	inositol polyphosphate-4-phosphatase, type I
novel_NIR_802	chr1	37419258	37426779	+	37422452	37426779	A5SS&ES	ENSMUST00000027287.11	novel	0.33	2	4	2	4	y	-	-	-	-	-	-	0.10	2	18	2	18	n	0.33	3	6	3	6	y	0.27	4	11	4	11	y	0.43	3	4	3	4	y	0.58	7	5	7	5	y	0.12	1	7	1	7	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	1.00	7	0	7	0	y	0.53	9	8	9	8	y	ENSMUSG00000026113.18	Inpp4a	chr1	protein_coding	inositol polyphosphate-4-phosphatase, type I
novel_NIR_803	chr1	37438001	37449351	+	37438001	37442530	3pMXE	ENSMUST00000132615.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026113.18	Inpp4a	chr1	protein_coding	inositol polyphosphate-4-phosphatase, type I
novel_NIR_804	chr1	37438001	37449371	+	37438001	37442530	3pMXE	ENSMUST00000132615.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.60	3	2	3	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026113.18	Inpp4a	chr1	protein_coding	inositol polyphosphate-4-phosphatase, type I
novel_NIR_805	chr1	37503615	37513193	-	37503615	37505618	A5SS&ES	ENSMUST00000042161.15	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.25	2	6	2	6	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000026110.16	Mgat4a	chr1	protein_coding	mannoside acetylglucosaminyltransferase 4, isoenzyme A
novel_NIR_806	chr1	37840986	37850053	-	37840986	37843710	A5SS&ES	ENSMUST00000239367.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000060771.16	Tsga10	chr1	protein_coding	testis specific 10
novel_NIR_807	chr1	37879719	37880266	-	37879738	37880266	A3SS	ENSMUST00000041815.15	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.43	3	4	3	4	y	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000060771.16	Tsga10	chr1	protein_coding	testis specific 10
novel_NIR_808	chr1	37911494	37913945	+	37911112	37913945	A5SS	ENSMUST00000128085.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000037216.6	Lipt1	chr1	protein_coding	lipoyltransferase 1
novel_NIR_809	chr1	37911494	37913945	+	37911406	37913945	A5SS	ENSMUST00000041621.5	novel	0.25	2	6	2	6	y	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.08	1	12	1	12	n	0.00	0	5	0	5	n	ENSMUSG00000037216.6	Lipt1	chr1	protein_coding	lipoyltransferase 1
novel_NIR_810	chr1	37911494	37913945	+	37911669	37913945	A5SS	ENSMUST00000142670.2	novel	0.22	2	7	2	7	y	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	17	0	17	n	0.09	1	10	1	10	n	0.00	0	14	0	14	n	ENSMUSG00000037216.6	Lipt1	chr1	protein_coding	lipoyltransferase 1
novel_NIR_811	chr1	37911494	37913945	+	37911726	37913945	5pMXE	ENSMUST00000144440.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000037216.6	Lipt1	chr1	protein_coding	lipoyltransferase 1
novel_NIR_812	chr1	37911931	37913945	+	37911112	37913945	A5SS	ENSMUST00000128085.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037216.6	Lipt1	chr1	protein_coding	lipoyltransferase 1
novel_NIR_813	chr1	37911931	37913945	+	37911406	37913945	A5SS	ENSMUST00000041621.5	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.25	2	6	2	6	y	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	ENSMUSG00000037216.6	Lipt1	chr1	protein_coding	lipoyltransferase 1
novel_NIR_814	chr1	37911931	37913945	+	37911669	37913945	A5SS	ENSMUST00000142670.2	novel	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.25	2	6	2	6	y	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	ENSMUSG00000037216.6	Lipt1	chr1	protein_coding	lipoyltransferase 1
novel_NIR_815	chr1	37911931	37913945	+	37911726	37913945	A5SS	ENSMUST00000144440.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037216.6	Lipt1	chr1	protein_coding	lipoyltransferase 1
novel_NIR_816	chr1	37920129	37920816	-	37920129	37920780	A5SS	ENSMUST00000139725.8	novel	0.04	1	26	1	26	n	0.05	1	21	1	21	n	0.03	1	28	1	28	n	0.00	0	18	0	18	n	0.04	1	26	1	26	n	0.00	0	12	0	12	n	0.00	0	29	0	29	n	0.00	0	15	0	15	n	0.17	4	20	4	20	y	0.08	3	33	3	33	n	0.00	0	13	0	13	n	0.11	3	24	3	24	n	ENSMUSG00000026088.16	Mitd1	chr1	protein_coding	MIT, microtubule interacting and transport, domain containing 1
novel_NIR_817	chr1	38113524	38113999	-	38113524	38113980	A5SS	ENSMUST00000194815.6	novel	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	ENSMUSG00000026082.12	Rev1	chr1	protein_coding	REV1, DNA directed polymerase
novel_NIR_818	chr1	38113524	38113999	-	38113524	38118371	A5SS	ENSMUST00000027251.12	novel	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.15	2	11	2	11	y	ENSMUSG00000026082.12	Rev1	chr1	protein_coding	REV1, DNA directed polymerase
novel_NIR_819	chr1	38113524	38114158	-	38113524	38113980	A5SS&ES	ENSMUST00000194815.6	novel	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000026082.12	Rev1	chr1	protein_coding	REV1, DNA directed polymerase
novel_NIR_820	chr1	38113524	38114158	-	38113524	38118371	A5SS	ENSMUST00000027251.12	novel	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.20	2	8	2	8	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.08	1	12	1	12	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	ENSMUSG00000026082.12	Rev1	chr1	protein_coding	REV1, DNA directed polymerase
novel_NIR_821	chr1	39409220	39410018	+	39409220	39410090	A3SS	ENSMUST00000195123.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000073702.12	Rpl31	chr1	protein_coding	ribosomal protein L31
novel_NIR_822	chr1	39604413	39610939	-	39604413	39616236	A5SS	ENSMUST00000195705.2	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.50	2	2	2	2	y	0.57	4	3	4	3	y	0.64	7	4	7	4	y	0.00	0	3	0	3	n	0.75	3	1	3	1	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.40	2	3	2	3	y	0.25	1	3	1	3	n	1.00	6	0	6	0	y	ENSMUSG00000048234.14	Rnf149	chr1	protein_coding	ring finger protein 149
novel_NIR_823	chr1	39604413	39610939	-	39604413	39616413	A5SS	ENSMUST00000195136.2	novel	0.60	3	2	3	2	y	1.00	1	0	1	0	n	0.40	2	3	2	3	y	1.00	4	0	4	0	y	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.75	6	2	6	2	y	ENSMUSG00000048234.14	Rnf149	chr1	protein_coding	ring finger protein 149
novel_NIR_824	chr1	39604413	39615789	-	39604413	39616236	A5SS	ENSMUST00000195705.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.25	1	3	1	3	n	0.25	1	3	1	3	n	1.00	1	0	1	0	n	ENSMUSG00000048234.14	Rnf149	chr1	protein_coding	ring finger protein 149
novel_NIR_825	chr1	39604413	39615789	-	39604413	39616413	A5SS	ENSMUST00000195136.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	ENSMUSG00000048234.14	Rnf149	chr1	protein_coding	ring finger protein 149
novel_NIR_826	chr1	39604413	39623680	-	39604413	39616236	5pMXE	ENSMUST00000195705.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.50	3	3	3	3	y	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000048234.14	Rnf149	chr1	protein_coding	ring finger protein 149
novel_NIR_827	chr1	39604413	39623680	-	39604413	39616413	5pMXE	ENSMUST00000195136.2	novel	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000048234.14	Rnf149	chr1	protein_coding	ring finger protein 149
novel_NIR_828	chr1	39604413	39630561	-	39604413	39616236	5pMXE	ENSMUST00000195705.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.50	3	3	3	3	y	0.00	0	4	0	4	n	0.50	3	3	3	3	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.40	2	3	2	3	y	0.00	0	3	0	3	n	1.00	2	0	2	0	y	ENSMUSG00000048234.14	Rnf149	chr1	protein_coding	ring finger protein 149
novel_NIR_829	chr1	39604413	39630561	-	39604413	39616413	5pMXE	ENSMUST00000195136.2	novel	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.50	2	2	2	2	y	ENSMUSG00000048234.14	Rnf149	chr1	protein_coding	ring finger protein 149
novel_NIR_830	chr1	40154799	40157115	+	40154358	40157115	A5SS	ENSMUST00000027243.13	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.17	1	5	1	5	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.45	5	6	5	6	y	0.40	2	3	2	3	y	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000026073.14	Il1r2	chr1	protein_coding	interleukin 1 receptor, type II
novel_NIR_831	chr1	40156030	40157115	+	40154358	40157115	A5SS	ENSMUST00000027243.13	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.29	2	5	2	5	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026073.14	Il1r2	chr1	protein_coding	interleukin 1 receptor, type II
novel_NIR_832	chr1	40264318	40321393	+	40264466	40321393	A5SS	ENSMUST00000027241.11	novel	0.35	7	13	7	13	y	0.24	6	19	6	19	y	0.17	36	173	36	173	y	0.26	11	32	11	32	y	0.11	7	58	7	58	n	0.26	24	69	24	69	y	0.28	20	51	20	51	y	0.25	20	60	20	60	y	0.41	9	13	9	13	y	0.20	8	33	8	33	y	0.27	6	16	6	16	y	0.57	16	12	16	12	y	ENSMUSG00000026072.13	Il1r1	chr1	protein_coding	interleukin 1 receptor, type I
novel_NIR_833	chr1	40264318	40321393	+	40306041	40321393	5pMXE	ENSMUST00000114795.3	novel	1.00	7	0	7	0	y	1.00	6	0	6	0	y	1.00	36	0	36	0	y	1.00	11	0	11	0	y	0.64	7	4	7	4	y	1.00	24	0	24	0	y	1.00	20	0	20	0	y	1.00	20	0	20	0	y	1.00	9	0	9	0	y	1.00	8	0	8	0	y	1.00	6	0	6	0	y	0.89	16	2	16	2	y	ENSMUSG00000026072.13	Il1r1	chr1	protein_coding	interleukin 1 receptor, type I
novel_NIR_834	chr1	40264466	40315258	+	40264466	40321393	A3SS	ENSMUST00000027241.11	novel	0.28	5	13	5	13	n	0.42	14	19	14	19	y	0.35	92	173	92	173	n	0.43	24	32	24	32	n	0.33	29	58	29	58	n	0.33	34	69	34	69	n	0.54	59	51	59	51	y	0.45	50	60	50	60	y	0.43	10	13	10	13	n	0.17	7	33	7	33	y	0.06	1	16	1	16	n	0.57	16	12	16	12	y	ENSMUSG00000026072.13	Il1r1	chr1	protein_coding	interleukin 1 receptor, type I
novel_NIR_835	chr1	40264466	40315262	+	40264466	40321393	A3SS	ENSMUST00000027241.11	novel	0.13	2	13	2	13	n	0.00	0	19	0	19	n	0.02	4	173	4	173	n	0.00	0	32	0	32	n	0.08	5	58	5	58	n	0.01	1	69	1	69	n	0.02	1	51	1	51	n	0.06	4	60	4	60	n	0.13	2	13	2	13	n	0.00	0	33	0	33	n	0.06	1	16	1	16	n	0.20	3	12	3	12	y	ENSMUSG00000026072.13	Il1r1	chr1	protein_coding	interleukin 1 receptor, type I
novel_NIR_836	chr1	40264466;40315337	40315258;40321393	+	40264466	40321393	cassetteExon	ENSMUST00000027241.11	novel	0.19	3.0	13	5;1	13	n	0.27	7.0	19	14;0	19	n	0.25	56.5	173	92;21	173	y	0.30	13.5	32	24;3	32	y	0.24	18.5	58	29;8	58	y	0.20	17.5	69	34;1	69	n	0.37	29.5	51	59;0	51	n	0.29	25.0	60	50;0	60	n	0.38	8.0	13	10;6	13	y	0.10	3.5	33	7;0	33	n	0.03	0.5	16	1;0	16	n	0.40	8.0	12	16;0	12	n	ENSMUSG00000026072.13	Il1r1	chr1	protein_coding	interleukin 1 receptor, type I
novel_NIR_837	chr1	40264466;40315337	40315262;40321393	+	40264466	40321393	cassetteExon	ENSMUST00000027241.11	novel	0.10	1.5	13	2;1	13	n	0.00	0.0	19	0;0	19	n	0.07	12.5	173	4;21	173	n	0.04	1.5	32	0;3	32	n	0.10	6.5	58	5;8	58	n	0.01	1.0	69	1;1	69	n	0.01	0.5	51	1;0	51	n	0.03	2.0	60	4;0	60	n	0.24	4.0	13	2;6	13	y	0.00	0.0	33	0;0	33	n	0.03	0.5	16	1;0	16	n	0.11	1.5	12	3;0	12	n	ENSMUSG00000026072.13	Il1r1	chr1	protein_coding	interleukin 1 receptor, type I
novel_NIR_838	chr1	40286665	40321393	+	40306041	40321393	5pMXE	ENSMUST00000114795.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000026072.13	Il1r1	chr1	protein_coding	interleukin 1 receptor, type I
novel_NIR_839	chr1	40306041	40315258	+	40306041	40321393	A3SS	ENSMUST00000114795.3	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.20	1	4	1	4	n	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	ENSMUSG00000026072.13	Il1r1	chr1	protein_coding	interleukin 1 receptor, type I
novel_NIR_840	chr1	40306041	40315258	+	40306041;40306647	40306537;40315258	ES	ENSMUST00000195402.2	novel	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	1.00	1	0.0	1	0;0	n	1.00	4	0.0	4	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	ENSMUSG00000026072.13	Il1r1	chr1	protein_coding	interleukin 1 receptor, type I
novel_NIR_841	chr1	40311081	40315258	+	40306647	40315258	A5SS	ENSMUST00000195402.2	novel	1.00	1	0	1	0	n	1.00	8	0	8	0	y	1.00	4	0	4	0	y	1.00	9	0	9	0	y	1.00	1	0	1	0	n	1.00	7	0	7	0	y	1.00	3	0	3	0	n	1.00	12	0	12	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000026072.13	Il1r1	chr1	protein_coding	interleukin 1 receptor, type I
novel_NIR_842	chr1	40311081	40321393	+	40306041	40321393	A5SS	ENSMUST00000114795.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.33	2	4	2	4	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000026072.13	Il1r1	chr1	protein_coding	interleukin 1 receptor, type I
novel_NIR_843	chr1	40315337	40321393	+	40306041	40321393	A5SS	ENSMUST00000114795.3	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	21	0	21	0	y	1.00	3	0	3	0	y	0.67	8	4	8	4	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000026072.13	Il1r1	chr1	protein_coding	interleukin 1 receptor, type I
novel_NIR_844	chr1	40315337	40321393	+	40315337	40316282	3pMXE	ENSMUST00000195402.2	novel	0.06	1	16	1	16	n	0.00	0	30	0	30	n	0.15	21	121	21	121	y	0.08	3	35	3	35	n	0.11	8	66	8	66	n	0.01	1	78	1	78	n	0.00	0	76	0	76	n	0.00	0	67	0	67	n	0.27	6	16	6	16	y	0.00	0	22	0	22	n	0.00	0	6	0	6	n	0.00	0	22	0	22	n	ENSMUSG00000026072.13	Il1r1	chr1	protein_coding	interleukin 1 receptor, type I
novel_NIR_845	chr1	40316491	40321393	+	40264466	40321393	A5SS	ENSMUST00000027241.11	novel	0.64	23	13	23	13	y	0.65	36	19	36	19	y	0.47	152	173	152	173	y	0.50	32	32	32	32	y	0.58	80	58	80	58	y	0.57	93	69	93	69	y	0.58	71	51	71	51	y	0.61	95	60	95	60	y	0.66	25	13	25	13	y	0.41	23	33	23	33	y	0.41	11	16	11	16	y	0.68	26	12	26	12	y	ENSMUSG00000026072.13	Il1r1	chr1	protein_coding	interleukin 1 receptor, type I
novel_NIR_846	chr1	40316491	40321393	+	40306041	40321393	A5SS	ENSMUST00000114795.3	novel	1.00	23	0	23	0	y	1.00	36	0	36	0	y	1.00	152	0	152	0	y	1.00	32	0	32	0	y	0.95	80	4	80	4	y	1.00	93	0	93	0	y	1.00	71	0	71	0	y	1.00	95	0	95	0	y	1.00	25	0	25	0	y	1.00	23	0	23	0	y	1.00	11	0	11	0	y	0.93	26	2	26	2	y	ENSMUSG00000026072.13	Il1r1	chr1	protein_coding	interleukin 1 receptor, type I
novel_NIR_847	chr1	42935328	42937408	+	42935328	42937401	A3SS	ENSMUST00000185376.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000060679.15	Mrps9	chr1	protein_coding	mitochondrial ribosomal protein S9
novel_NIR_848	chr1	42938709	42938863	+	42938709	42940234	A3SS	ENSMUST00000185523.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000060679.15	Mrps9	chr1	protein_coding	mitochondrial ribosomal protein S9
novel_NIR_849	chr1	42938709	42942422	+	42938709	42940234	3pMXE	ENSMUST00000185523.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000060679.15	Mrps9	chr1	protein_coding	mitochondrial ribosomal protein S9
novel_NIR_850	chr1	42938709	42942457	+	42938709	42940234	3pMXE	ENSMUST00000185523.7	novel	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000060679.15	Mrps9	chr1	protein_coding	mitochondrial ribosomal protein S9
novel_NIR_851	chr1	42938709	42944565	+	42938709	42940234	3pMXE	ENSMUST00000185523.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000060679.15	Mrps9	chr1	protein_coding	mitochondrial ribosomal protein S9
novel_NIR_852	chr1	43110815	43114688	-	43110815	43131541	A5SS	ENSMUST00000188728.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000070939.10	Tgfbrap1	chr1	protein_coding	transforming growth factor, beta receptor associated protein 1
novel_NIR_853	chr1	43110815	43114688	-	43110815	43136012	A5SS	ENSMUST00000190427.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000070939.10	Tgfbrap1	chr1	protein_coding	transforming growth factor, beta receptor associated protein 1
novel_NIR_854	chr1	43115112	43116087	-	43115112	43134525	A5SS	ENSMUST00000189010.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000070939.10	Tgfbrap1	chr1	protein_coding	transforming growth factor, beta receptor associated protein 1
novel_NIR_855	chr1	43115112	43116087	-	43115112	43136012	A5SS	ENSMUST00000095014.8	novel	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000070939.10	Tgfbrap1	chr1	protein_coding	transforming growth factor, beta receptor associated protein 1
novel_NIR_856	chr1	43115112	43118887	-	43115112	43131541	A5SS	ENSMUST00000186694.7	novel	0.00	0	13	0	13	n	0.06	1	16	1	16	n	0.09	2	20	2	20	n	0.11	2	17	2	17	n	0.00	0	26	0	26	n	0.20	3	12	3	12	y	0.11	1	8	1	8	n	0.07	1	13	1	13	n	0.00	0	9	0	9	n	0.00	0	26	0	26	n	0.06	1	17	1	17	n	0.19	3	13	3	13	y	ENSMUSG00000070939.10	Tgfbrap1	chr1	protein_coding	transforming growth factor, beta receptor associated protein 1
novel_NIR_857	chr1	43115112	43118887	-	43115112	43134525	A5SS	ENSMUST00000189010.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	n	ENSMUSG00000070939.10	Tgfbrap1	chr1	protein_coding	transforming growth factor, beta receptor associated protein 1
novel_NIR_858	chr1	43115112	43118887	-	43115112	43136012	A5SS	ENSMUST00000095014.8	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.50	2	2	2	2	y	0.29	2	5	2	5	y	0.00	0	2	0	2	n	0.75	3	1	3	1	y	0.20	1	4	1	4	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.75	3	1	3	1	n	ENSMUSG00000070939.10	Tgfbrap1	chr1	protein_coding	transforming growth factor, beta receptor associated protein 1
novel_NIR_859	chr1	43115112	43131429	-	43115112	43131541	A5SS	ENSMUST00000186694.7	novel	0.00	0	13	0	13	n	0.16	3	16	3	16	y	0.00	0	20	0	20	n	0.00	0	17	0	17	n	0.00	0	26	0	26	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.07	1	13	1	13	n	0.00	0	9	0	9	n	0.00	0	26	0	26	n	0.00	0	17	0	17	n	0.00	0	13	0	13	n	ENSMUSG00000070939.10	Tgfbrap1	chr1	protein_coding	transforming growth factor, beta receptor associated protein 1
novel_NIR_860	chr1	43115112	43131429	-	43115112	43134525	A5SS	ENSMUST00000189010.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000070939.10	Tgfbrap1	chr1	protein_coding	transforming growth factor, beta receptor associated protein 1
novel_NIR_861	chr1	43115112	43131429	-	43115112	43136012	A5SS	ENSMUST00000095014.8	novel	0.00	0	1	0	1	n	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000070939.10	Tgfbrap1	chr1	protein_coding	transforming growth factor, beta receptor associated protein 1
novel_NIR_862	chr1	43118986	43131541	-	43110815	43131541	A3SS	ENSMUST00000188728.2	novel	0.75	3	1	3	1	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000070939.10	Tgfbrap1	chr1	protein_coding	transforming growth factor, beta receptor associated protein 1
novel_NIR_863	chr1	43118986	43131541	-	43115112	43131541	A3SS	ENSMUST00000186694.7	novel	0.19	3	13	3	13	y	0.00	0	16	0	16	n	0.09	2	20	2	20	n	0.00	0	17	0	17	n	0.07	2	26	2	26	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.04	1	26	1	26	n	0.06	1	17	1	17	n	0.00	0	13	0	13	n	ENSMUSG00000070939.10	Tgfbrap1	chr1	protein_coding	transforming growth factor, beta receptor associated protein 1
novel_NIR_864	chr1	43128055	43131541	-	43110815	43131541	A3SS	ENSMUST00000188728.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000070939.10	Tgfbrap1	chr1	protein_coding	transforming growth factor, beta receptor associated protein 1
novel_NIR_865	chr1	44010892	44011755	+	44010892	44011716	A3SS	ENSMUST00000188302.7	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041763.15	Tpp2	chr1	protein_coding	tripeptidyl peptidase II
novel_NIR_866	chr1	44149243	44149665	-	44149243	44151805	A5SS	ENSMUST00000027213.14	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000026047.14	Poglut2	chr1	protein_coding	protein O-glucosyltransferase 2
novel_NIR_867	chr1	44158685	44159334	+	44158335	44159334	A5SS	ENSMUST00000138521.8	novel	0.00	0	2	0	2	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	0.40	2	3	2	3	y	0.75	3	1	3	1	y	0.25	1	3	1	3	n	0.50	3	3	3	3	y	0.50	3	3	3	3	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000041684.12	Bivm	chr1	protein_coding	basic, immunoglobulin-like variable motif containing
novel_NIR_868	chr1	44158685	44159334	+	44158355	44159334	A5SS	ENSMUST00000155917.8	novel	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.67	2	1	2	1	y	0.67	2	1	2	1	y	0.75	3	1	3	1	y	0.50	1	1	1	1	n	0.75	3	1	3	1	y	0.60	3	2	3	2	y	0.40	2	3	2	3	y	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000041684.12	Bivm	chr1	protein_coding	basic, immunoglobulin-like variable motif containing
novel_NIR_869	chr1	44158685	44159334	+	44158530	44159334	A5SS	ENSMUST00000035991.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.50	2	2	2	2	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041684.12	Bivm	chr1	protein_coding	basic, immunoglobulin-like variable motif containing
novel_NIR_870	chr1	44158685	44159334	+	44158889	44159334	A5SS	ENSMUST00000186280.2	novel	-	-	-	-	-	-	0.50	2	2	2	2	y	1.00	2	0	2	0	y	0.67	2	1	2	1	y	0.38	3	5	3	5	y	0.50	1	1	1	1	n	0.60	3	2	3	2	y	0.75	3	1	3	1	y	0.67	2	1	2	1	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000041684.12	Bivm	chr1	protein_coding	basic, immunoglobulin-like variable motif containing
novel_NIR_871	chr1	44159434	44165526	+	44159434	44165426	A3SS	ENSMUST00000155917.8	novel	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.22	2	7	2	7	y	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.00	0	14	0	14	n	ENSMUSG00000041684.12	Bivm	chr1	protein_coding	basic, immunoglobulin-like variable motif containing
novel_NIR_872	chr1	44159434	44165526	+	44159434	44165503	A3SS	ENSMUST00000129068.2	novel	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000041684.12	Bivm	chr1	protein_coding	basic, immunoglobulin-like variable motif containing
novel_NIR_873	chr1	44176276	44177736	+	44176276	44177733	A3SS	ENSMUST00000035991.8	novel	0.15	2	11	2	11	y	0.00	0	18	0	18	n	0.17	4	20	4	20	y	0.04	1	25	1	25	n	0.00	0	26	0	26	n	0.14	1	6	1	6	n	0.10	2	19	2	19	n	0.00	0	8	0	8	n	0.00	0	30	0	30	n	0.08	2	24	2	24	n	0.12	2	15	2	15	n	0.04	1	25	1	25	n	ENSMUSG00000041684.12	Bivm	chr1	protein_coding	basic, immunoglobulin-like variable motif containing
novel_NIR_874	chr1	45852465	45853705	+	45852465	45853701	A3SS	ENSMUST00000027139.15	novel	0.00	0	25	0	25	n	0.11	2	16	2	16	n	0.00	0	23	0	23	n	0.00	0	21	0	21	n	0.00	0	22	0	22	n	0.23	3	10	3	10	y	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	23	0	23	n	0.00	0	18	0	18	n	0.00	0	29	0	29	n	ENSMUSG00000025995.17	Wdr75	chr1	protein_coding	WD repeat domain 75
novel_NIR_875	chr1	46875311	46880908	-	46875311	46892631	A5SS	ENSMUST00000027131.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	8	0	8	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000025986.7	Slc39a10	chr1	protein_coding	solute carrier family 39 (zinc transporter), member 10
novel_NIR_876	chr1	46875311	46880908	-	46875311	46927148	A5SS	ENSMUST00000185520.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025986.7	Slc39a10	chr1	protein_coding	solute carrier family 39 (zinc transporter), member 10
novel_NIR_877	chr1	46875311	46880908	-	46875311	46931960	A5SS	ENSMUST00000186852.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025986.7	Slc39a10	chr1	protein_coding	solute carrier family 39 (zinc transporter), member 10
novel_NIR_878	chr1	4844739	4846633	-	4844739	4847748	A5SS	ENSMUST00000130201.8	novel	0.60	40	27	40	27	y	0.29	12	30	12	30	y	0.45	10	12	10	12	y	0.55	36	29	36	29	y	0.39	22	35	22	35	y	0.57	13	10	13	10	y	0.42	26	36	26	36	y	0.57	17	13	17	13	y	0.47	22	25	22	25	y	0.50	25	25	25	25	y	0.51	39	37	39	37	y	0.54	37	32	37	32	y	ENSMUSG00000033845.14	Mrpl15	chr1	protein_coding	mitochondrial ribosomal protein L15
novel_NIR_879	chr1	4852283	4852791	-	4852524	4852791	A3SS	ENSMUST00000146665.3	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.57	4	3	4	3	y	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	ENSMUSG00000033845.14	Mrpl15	chr1	protein_coding	mitochondrial ribosomal protein L15
novel_NIR_880	chr1	4877909	4878678	+	4878588	4878678	5pMXE	ENSMUST00000131119.2	novel	0.67	2	1	2	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000025903.15	Lypla1	chr1	protein_coding	lysophospholipase 1
novel_NIR_881	chr1	4879170	4898807	+	4878205	4898807	A5SS	ENSMUST00000155020.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	ENSMUSG00000104217.2	Gm37988	chr1	protein_coding	predicted gene, 37988
novel_NIR_882	chr1	4907297	4907825	+	4907297	4911179	A3SS	ENSMUST00000115529.8	novel	0.00	0	19	0	19	n	0.18	2	9	2	9	y	0.04	1	22	1	22	n	0.04	1	27	1	27	n	0.10	2	19	2	19	n	0.11	1	8	1	8	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	27	0	27	n	0.07	1	14	1	14	n	0.11	2	17	2	17	n	ENSMUSG00000025903.15	Lypla1	chr1	protein_coding	lysophospholipase 1
novel_NIR_883	chr1	4909714	4911179	+	4907297	4911179	A5SS	ENSMUST00000115529.8	novel	0.00	0	19	0	19	n	0.18	2	9	2	9	y	0.00	0	22	0	22	n	0.00	0	27	0	27	n	0.00	0	19	0	19	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	27	0	27	n	0.00	0	14	0	14	n	0.00	0	17	0	17	n	ENSMUSG00000025903.15	Lypla1	chr1	protein_coding	lysophospholipase 1
novel_NIR_884	chr1	4911355	4915204	+	4911355	4917007	A3SS	ENSMUST00000134384.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000025903.15	Lypla1	chr1	protein_coding	lysophospholipase 1
novel_NIR_885	chr1	4911355	4915204	+	4911355	4937693	A3SS	ENSMUST00000155020.2	novel	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000104217.2	Gm37988	chr1	protein_coding	predicted gene, 37988
novel_NIR_886	chr1	4911355	4918363	+	4911355	4937693	A3SS	ENSMUST00000155020.2	novel	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.50	3	3	3	3	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000104217.2	Gm37988	chr1	protein_coding	predicted gene, 37988
novel_NIR_887	chr1	4911355	4918363	+	4911355;4917106	4917007;4918363	ES	ENSMUST00000134384.8	novel	-	-	-	-	-	-	0.67	2	1.0	2	0;2	y	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	1.00	2	0.0	2	0;0	y	0.75	3	1.0	3	1;1	y	0.00	0	0.5	0	0;1	n	-	-	-	-	-	-	0.00	0	0.5	0	0;1	n	0.00	0	1.0	0	1;1	n	0.00	0	1.5	0	0;3	n	ENSMUSG00000025903.15	Lypla1	chr1	protein_coding	lysophospholipase 1
novel_NIR_888	chr1	4916117	4917007	+	4911355	4917007	A5SS	ENSMUST00000134384.8	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000025903.15	Lypla1	chr1	protein_coding	lysophospholipase 1
novel_NIR_889	chr1	51516775	51517163	-	51516775	51516881	A5SS	ENSMUST00000189542.7	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026107.12	Nabp1	chr1	protein_coding	nucleic acid binding protein 1
novel_NIR_890	chr1	51516775	51517163	-	51516775	51517460	A5SS	ENSMUST00000185534.2	novel	0.14	1	6	1	6	n	0.00	0	8	0	8	n	0.05	1	18	1	18	n	0.30	3	7	3	7	y	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	ENSMUSG00000026107.12	Nabp1	chr1	protein_coding	nucleic acid binding protein 1
novel_NIR_891	chr1	51516775	51517163	-	51516775	51517527	A5SS	ENSMUST00000188051.7	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026107.12	Nabp1	chr1	protein_coding	nucleic acid binding protein 1
novel_NIR_892	chr1	51516775	51517163	-	51516775	51517531	A5SS	ENSMUST00000188204.7	novel	0.50	1	1	1	1	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000026107.12	Nabp1	chr1	protein_coding	nucleic acid binding protein 1
novel_NIR_893	chr1	51516775	51517447	-	51516775	51516881	A5SS	ENSMUST00000189542.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026107.12	Nabp1	chr1	protein_coding	nucleic acid binding protein 1
novel_NIR_894	chr1	51516775	51517447	-	51516775	51517527	A5SS	ENSMUST00000188051.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026107.12	Nabp1	chr1	protein_coding	nucleic acid binding protein 1
novel_NIR_895	chr1	51516775	51517447	-	51516775	51517531	A5SS	ENSMUST00000188204.7	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000026107.12	Nabp1	chr1	protein_coding	nucleic acid binding protein 1
novel_NIR_896	chr1	5154803	5159232	+	5153501	5159232	A5SS	ENSMUST00000192029.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000033793.13	Atp6v1h	chr1	protein_coding	ATPase, H+ transporting, lysosomal V1 subunit H
novel_NIR_897	chr1	5185576	5187613	+	5168356	5187613	A5SS	ENSMUST00000192698.3	novel	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	10	0	10	n	0.33	1	2	1	2	n	0.14	1	6	1	6	n	0.00	0	8	0	8	n	1.00	3	0	3	0	y	0.00	0	13	0	13	n	ENSMUSG00000033793.13	Atp6v1h	chr1	protein_coding	ATPase, H+ transporting, lysosomal V1 subunit H
novel_NIR_898	chr1	51873702	51887159	-	51873702	51889474	A5SS	ENSMUST00000123299.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000018417.15	Myo1b	chr1	protein_coding	myosin IB
novel_NIR_899	chr1	51922385	51935326	-	51922385	51946290	A5SS	ENSMUST00000114541.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000018417.15	Myo1b	chr1	protein_coding	myosin IB
novel_NIR_900	chr1	51922385	51935326	-	51922385	51950411	A5SS	ENSMUST00000126657.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.50	1	1	1	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	ENSMUSG00000018417.15	Myo1b	chr1	protein_coding	myosin IB
novel_NIR_901	chr1	5203485	5206053	+	5203485	5213973	A3SS	ENSMUST00000192847.6	novel	-	-	-	-	-	-	1.00	11	0	11	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	8	0	8	0	y	-	-	-	-	-	-	ENSMUSG00000033793.13	Atp6v1h	chr1	protein_coding	ATPase, H+ transporting, lysosomal V1 subunit H
novel_NIR_902	chr1	52239810	52246460	-	52239046	52246460	A3SS	ENSMUST00000114513.9	novel	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.50	3	3	3	3	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000026103.15	Gls	chr1	protein_coding	glutaminase
novel_NIR_903	chr1	52239810	52246460	-	52239810;52243675	52243505;52246460	ES	ENSMUST00000139273.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	0.5	0	0;1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1.0	0	0;2	n	0.00	0	0.5	0	0;1	n	1.00	3	0.0	3	0;0	y	-	-	-	-	-	-	0.00	0	1.0	0	0;2	n	-	-	-	-	-	-	ENSMUSG00000026103.15	Gls	chr1	protein_coding	glutaminase
novel_NIR_904	chr1	52239810	52246460	-	52243675	52246460	3pMXE	ENSMUST00000147825.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000026103.15	Gls	chr1	protein_coding	glutaminase
novel_NIR_905	chr1	52529914	52539365	-	52529914	52539009	A5SS&ES	ENSMUST00000186764.7	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000002881.15	Nab1	chr1	protein_coding	Ngfi-A binding protein 1
novel_NIR_906	chr1	52529914	52539365	-	52529914	52539369	A5SS	ENSMUST00000069792.14	novel	0.16	3	16	3	16	y	0.04	1	24	1	24	n	0.01	1	81	1	81	n	0.02	1	44	1	44	n	0.04	2	48	2	48	n	0.03	1	31	1	31	n	0.03	1	28	1	28	n	0.00	0	20	0	20	n	0.05	1	20	1	20	n	0.03	1	34	1	34	n	0.00	0	28	0	28	n	0.00	0	45	0	45	n	ENSMUSG00000002881.15	Nab1	chr1	protein_coding	Ngfi-A binding protein 1
novel_NIR_907	chr1	53255506	53306987	-	53255506;53295951	53295788;53306987	ES	ENSMUST00000027267.14	novel	0.00	0	6.0	0	7;5	n	0.00	0	3.5	0	3;4	n	0.00	0	3.5	0	3;4	n	0.00	0	7.0	0	9;5	n	0.14	2	12.5	2	14;11	n	0.00	0	4.0	0	3;5	n	0.00	0	4.0	0	6;2	n	0.27	2	5.5	2	7;4	y	0.00	0	8.5	0	12;5	n	0.09	1	10.5	1	16;5	n	0.00	0	4.0	0	2;6	n	0.09	1	10.5	1	14;7	n	ENSMUSG00000026098.14	Pms1	chr1	protein_coding	PMS1 homolog 1, mismatch repair system component
novel_NIR_908	chr1	53255506	53306987	-	53304587	53306987	3pMXE	ENSMUST00000142922.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000026098.14	Pms1	chr1	protein_coding	PMS1 homolog 1, mismatch repair system component
novel_NIR_909	chr1	53321251	53332276	-	53321251	53329538	A5SS&ES	ENSMUST00000135246.8	novel	0.67	2	1	2	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000026098.14	Pms1	chr1	protein_coding	PMS1 homolog 1, mismatch repair system component
novel_NIR_910	chr1	53321251	53332276	-	53321251	53335891	A5SS	ENSMUST00000128337.8	novel	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000026098.14	Pms1	chr1	protein_coding	PMS1 homolog 1, mismatch repair system component
novel_NIR_911	chr1	53321251	53332276	-	53321251	53335978	A5SS	ENSMUST00000126590.2	novel	0.33	2	4	2	4	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000026098.14	Pms1	chr1	protein_coding	PMS1 homolog 1, mismatch repair system component
novel_NIR_912	chr1	53321251	53332276	-	53321251	53336045	A5SS	ENSMUST00000027267.14	novel	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000026098.14	Pms1	chr1	protein_coding	PMS1 homolog 1, mismatch repair system component
novel_NIR_913	chr1	53344765	53352914	+	53344765	53354019	A3SS	ENSMUST00000190734.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000100679.2	Gm28778	chr1	protein_coding	predicted gene 28778
novel_NIR_914	chr1	53344765	53354015	+	53344765	53354019	A3SS	ENSMUST00000190734.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000100679.2	Gm28778	chr1	protein_coding	predicted gene 28778
novel_NIR_915	chr1	53353017	53354019	+	53344765	53354019	A5SS	ENSMUST00000190734.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000100679.2	Gm28778	chr1	protein_coding	predicted gene 28778
novel_NIR_916	chr1	53354258	53359102	+	53354258	53355640	3pMXE	ENSMUST00000135786.8	novel	0.33	1	2	1	2	n	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.50	2	2	2	2	y	ENSMUSG00000026096.15	Osgepl1	chr1	protein_coding	O-sialoglycoprotein endopeptidase-like 1
novel_NIR_917	chr1	53384088	53385739	-	53369567	53385739	A3SS	ENSMUST00000144660.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	12	0	12	0	y	1.00	12	0	12	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	4	0	4	0	y	0.83	5	1	5	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000099913.2	Gm28551	chr1	protein_coding	predicted gene 28551
novel_NIR_918	chr1	53390092	53391694	-	53390092	53391401	A5SS&ES	ENSMUST00000147021.9	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026095.16	Asnsd1	chr1	protein_coding	asparagine synthetase domain containing 1
novel_NIR_919	chr1	53990080	54017354	-	53990080	54079360	A5SS	ENSMUST00000120904.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000042807.16	Hecw2	chr1	protein_coding	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2
novel_NIR_920	chr1	55126100	55126506	-	55126100	55127304	A5SS	ENSMUST00000144077.3	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000025980.15	Hspd1	chr1	protein_coding	heat shock protein 1 (chaperonin)
novel_NIR_921	chr1	55175898	55181421	+	55175898	55187478	A3SS	ENSMUST00000161122.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000025979.14	Mob4	chr1	protein_coding	MOB family member 4, phocein
novel_NIR_922	chr1	55175898	55181421	+	55175898	55187707	A3SS	ENSMUST00000027122.14	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000025979.14	Mob4	chr1	protein_coding	MOB family member 4, phocein
novel_NIR_923	chr1	55181528	55184283	+	55170518	55184283	A5SS	ENSMUST00000159311.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.80	4	1	4	1	y	ENSMUSG00000025979.14	Mob4	chr1	protein_coding	MOB family member 4, phocein
novel_NIR_924	chr1	55182579	55224109	-	55211241	55224109	3pMXE	ENSMUST00000027121.15	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	2	4	2	4	y	0.00	0	1	0	1	n	ENSMUSG00000025978.15	Rftn2	chr1	protein_coding	raftlin family member 2
novel_NIR_925	chr1	57418971	57419233	+	57418971	57419201	A3SS	ENSMUST00000185952.2	novel	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	-	-	-	-	-	-	ENSMUSG00000038323.4	1700066M21Rik	chr1	protein_coding	RIKEN cDNA 1700066M21 gene
novel_NIR_926	chr1	57418971	57421902	+	57418971	57419201	3pMXE	ENSMUST00000185952.2	novel	0.09	1	10	1	10	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.46	6	7	6	7	y	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.14	2	12	2	12	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.11	1	8	1	8	n	-	-	-	-	-	-	ENSMUSG00000038323.4	1700066M21Rik	chr1	protein_coding	RIKEN cDNA 1700066M21 gene
novel_NIR_927	chr1	57419387	57421902	+	57417105	57421902	A5SS	ENSMUST00000042734.3	novel	0.33	11	22	11	22	y	0.44	12	15	12	15	y	0.42	13	18	13	18	y	0.28	15	38	15	38	y	0.39	17	27	17	27	y	0.42	8	11	8	11	y	0.47	19	21	19	21	y	0.44	7	9	7	9	y	0.28	9	23	9	23	y	0.49	28	29	28	29	y	0.60	18	12	18	12	y	0.62	26	16	26	16	y	ENSMUSG00000038323.4	1700066M21Rik	chr1	protein_coding	RIKEN cDNA 1700066M21 gene
novel_NIR_928	chr1	58069217	58069373	+	58069217	58080595	A3SS	ENSMUST00000001027.7	novel	0.04	1	22	1	22	n	0.44	4	5	4	5	y	0.25	5	15	5	15	y	0.00	0	28	0	28	n	0.00	0	36	0	36	n	0.00	0	27	0	27	n	0.02	1	45	1	45	n	0.00	0	20	0	20	n	0.06	3	44	3	44	n	0.02	1	48	1	48	n	0.04	1	26	1	26	n	0.11	3	24	3	24	n	ENSMUSG00000063558.5	Aox1	chr1	protein_coding	aldehyde oxidase 1
novel_NIR_929	chr1	58069217	58069385	+	58069217	58080595	A3SS	ENSMUST00000001027.7	novel	0.35	12	22	12	22	y	0.58	7	5	7	5	y	0.38	9	15	9	15	y	0.15	5	28	5	28	y	0.12	5	36	5	36	n	0.23	8	27	8	27	y	0.10	5	45	5	45	n	0.13	3	20	3	20	n	0.06	3	44	3	44	n	0.14	8	48	8	48	n	0.07	2	26	2	26	n	0.23	7	24	7	24	y	ENSMUSG00000063558.5	Aox1	chr1	protein_coding	aldehyde oxidase 1
novel_NIR_930	chr1	58098349	58098538	+	58098345	58098538	A5SS	ENSMUST00000001027.7	novel	0.00	0	36	0	36	n	0.00	0	12	0	12	n	0.29	4	10	4	10	y	0.00	0	41	0	41	n	0.07	3	42	3	42	n	0.11	1	8	1	8	n	0.03	1	38	1	38	n	0.00	0	13	0	13	n	0.05	2	42	2	42	n	0.06	4	61	4	61	n	0.05	2	42	2	42	n	0.02	1	41	1	41	n	ENSMUSG00000063558.5	Aox1	chr1	protein_coding	aldehyde oxidase 1
novel_NIR_931	chr1	58109322;58111393	58111193;58112337	+	58109322	58112337	cassetteExon	ENSMUST00000001027.7	novel	0.04	2.5	64	5;0	64	n	0.03	1.0	30	2;0	30	n	0.19	4.5	19	7;2	19	y	0.01	1.0	95	2;0	95	n	0.03	2.5	97	5;0	97	n	0.17	4.5	22	7;2	22	y	0.00	0.0	98	0;0	98	n	0.00	0.0	21	0;0	21	n	0.02	2.0	92	4;0	92	n	0.02	3.5	143	7;0	143	n	0.00	0.5	103	1;0	103	n	0.05	4.0	80	8;0	80	n	ENSMUSG00000063558.5	Aox1	chr1	protein_coding	aldehyde oxidase 1
novel_NIR_932	chr1	58154575	58157757	+	58154087	58157757	A5SS	ENSMUST00000040999.14	novel	0.18	41	183	41	183	y	0.10	9	84	9	84	n	0.43	6	8	6	8	y	0.10	39	355	39	355	n	0.15	73	411	73	411	y	0.00	0	10	0	10	n	0.18	53	236	53	236	y	0.16	9	46	9	46	n	0.10	40	365	40	365	n	0.15	83	474	83	474	y	0.12	46	342	46	342	n	0.11	50	394	50	394	n	ENSMUSG00000064294.13	Aox3	chr1	protein_coding	aldehyde oxidase 3
novel_NIR_933	chr1	58154575	58158640	+	58158212	58158640	A5SS&ES	ENSMUST00000159014.2	novel	0.20	1	4	1	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.07	1	13	1	13	n	0.00	0	15	0	15	n	0.00	0	1	0	1	n	0.20	2	8	2	8	y	0.00	0	1	0	1	n	0.50	6	6	6	6	y	0.16	3	16	3	16	y	0.52	11	10	11	10	n	0.19	3	13	3	13	y	ENSMUSG00000064294.13	Aox3	chr1	protein_coding	aldehyde oxidase 3
novel_NIR_934	chr1	58459367	58460242	-	58458892	58460242	A3SS	ENSMUST00000148330.8	novel	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.67	2	1	2	1	y	0.00	0	5	0	5	n	0.00	0	8	0	8	n	ENSMUSG00000026034.18	Clk1	chr1	protein_coding	CDC-like kinase 1
novel_NIR_935	chr1	58503879	58505154	-	58503449	58505154	A3SS	ENSMUST00000027198.12	novel	0.17	2	10	2	10	y	0.00	0	11	0	11	n	0.00	0	24	0	24	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	17	0	17	n	0.00	0	7	0	7	n	0.00	0	17	0	17	n	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	ENSMUSG00000026037.15	Orc2	chr1	protein_coding	origin recognition complex, subunit 2
novel_NIR_936	chr1	58752816	58761488	+	58752816	58753276	3pMXE	ENSMUST00000156870.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000026031.16	Cflar	chr1	protein_coding	CASP8 and FADD-like apoptosis regulator
novel_NIR_937	chr1	58752816	58761488	+	58752818	58761488	A5SS	ENSMUST00000123553.2	novel	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.22	2	7	2	7	y	0.00	0	6	0	6	n	ENSMUSG00000026031.16	Cflar	chr1	protein_coding	CASP8 and FADD-like apoptosis regulator
novel_NIR_938	chr1	58752818	58753276	+	58752816	58753276	A5SS	ENSMUST00000156870.2	novel	1.00	2	0	2	0	y	1.00	3	0	3	0	y	0.91	10	1	10	1	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	7	0	7	0	y	1.00	4	0	4	0	y	1.00	7	0	7	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	ENSMUSG00000026031.16	Cflar	chr1	protein_coding	CASP8 and FADD-like apoptosis regulator
novel_NIR_939	chr1	58752818	58753276	+	58752818	58756419	A3SS	ENSMUST00000097723.3	novel	0.67	2	1	2	1	y	0.75	3	1	3	1	y	0.71	10	4	10	4	y	0.80	4	1	4	1	y	0.14	1	6	1	6	n	0.71	5	2	5	2	y	1.00	7	0	7	0	y	0.67	4	2	4	2	y	0.64	7	4	7	4	y	0.30	3	7	3	7	y	0.38	3	5	3	5	y	0.33	2	4	2	4	y	ENSMUSG00000026031.16	Cflar	chr1	protein_coding	CASP8 and FADD-like apoptosis regulator
novel_NIR_940	chr1	58752818	58753276	+	58752818	58761488	A3SS	ENSMUST00000123553.2	novel	0.29	2	5	2	5	y	0.30	3	7	3	7	y	0.56	10	8	10	8	y	0.44	4	5	4	5	y	0.08	1	11	1	11	n	0.50	5	5	5	5	y	0.47	7	8	7	8	y	0.40	4	6	4	6	y	0.54	7	6	7	6	y	0.33	3	6	3	6	y	0.30	3	7	3	7	y	0.25	2	6	2	6	y	ENSMUSG00000026031.16	Cflar	chr1	protein_coding	CASP8 and FADD-like apoptosis regulator
novel_NIR_941	chr1	58752818	58753276	+	58752818	58765465	A3SS	ENSMUST00000140940.8	novel	0.04	2	43	2	43	n	0.08	3	34	3	34	n	0.15	10	56	10	56	y	0.07	4	56	4	56	n	0.01	1	79	1	79	n	0.10	5	44	5	44	n	0.12	7	49	7	49	n	0.07	4	55	4	55	n	0.13	7	46	7	46	n	0.05	3	53	3	53	n	0.11	3	25	3	25	n	0.04	2	49	2	49	n	ENSMUSG00000026031.16	Cflar	chr1	protein_coding	CASP8 and FADD-like apoptosis regulator
novel_NIR_942	chr1	58752818	58761509	+	58752818	58756419	3pMXE	ENSMUST00000097723.3	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	ENSMUSG00000026031.16	Cflar	chr1	protein_coding	CASP8 and FADD-like apoptosis regulator
novel_NIR_943	chr1	58752818	58761509	+	58752818	58761488	A3SS	ENSMUST00000123553.2	novel	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.25	2	6	2	6	y	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.12	1	7	1	7	n	0.00	0	6	0	6	n	ENSMUSG00000026031.16	Cflar	chr1	protein_coding	CASP8 and FADD-like apoptosis regulator
novel_NIR_944	chr1	58752818	58765384	+	58752818	58756419	3pMXE	ENSMUST00000097723.3	novel	0.00	0	1	0	1	n	0.75	3	1	3	1	y	0.43	3	4	3	4	y	0.00	0	1	0	1	n	0.14	1	6	1	6	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	ENSMUSG00000026031.16	Cflar	chr1	protein_coding	CASP8 and FADD-like apoptosis regulator
novel_NIR_945	chr1	58752818	58765384	+	58752818	58761488	3pMXE	ENSMUST00000123553.2	novel	0.00	0	5	0	5	n	0.30	3	7	3	7	y	0.27	3	8	3	8	y	0.00	0	5	0	5	n	0.08	1	11	1	11	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.14	1	6	1	6	n	0.12	1	7	1	7	n	0.00	0	6	0	6	n	ENSMUSG00000026031.16	Cflar	chr1	protein_coding	CASP8 and FADD-like apoptosis regulator
novel_NIR_946	chr1	58752818	58765541	+	58752818	58756419	3pMXE	ENSMUST00000097723.3	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.67	2	1	2	1	y	0.00	0	6	0	6	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.33	2	4	2	4	y	ENSMUSG00000026031.16	Cflar	chr1	protein_coding	CASP8 and FADD-like apoptosis regulator
novel_NIR_947	chr1	58752818	58765541	+	58752818	58761488	3pMXE	ENSMUST00000123553.2	novel	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.11	1	8	1	8	n	0.29	2	5	2	5	y	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.25	2	6	2	6	y	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.25	2	6	2	6	y	ENSMUSG00000026031.16	Cflar	chr1	protein_coding	CASP8 and FADD-like apoptosis regulator
novel_NIR_948	chr1	58756136	58756419	+	58752818	58756419	A5SS	ENSMUST00000097723.3	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.69	9	4	9	4	y	0.75	3	1	3	1	y	0.33	3	6	3	6	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.17	1	5	1	5	n	0.43	3	4	3	4	y	ENSMUSG00000026031.16	Cflar	chr1	protein_coding	CASP8 and FADD-like apoptosis regulator
novel_NIR_949	chr1	58837855	58863074	+	58841852	58863074	5pMXE	ENSMUST00000165549.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000026029.15	Casp8	chr1	protein_coding	caspase 8
novel_NIR_950	chr1	58837855	58863074	+	58843273	58863074	A5SS&ES	ENSMUST00000191201.7	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.50	2	2	2	2	y	1.00	2	0	2	0	y	0.00	0	2	0	2	n	ENSMUSG00000026029.15	Casp8	chr1	protein_coding	caspase 8
novel_NIR_951	chr1	58945970	58947688	-	58945970	58947682	A5SS	ENSMUST00000027186.12	novel	0.00	0	25	0	25	n	0.07	1	13	1	13	n	0.08	3	33	3	33	n	0.00	0	20	0	20	n	0.07	2	26	2	26	n	0.00	0	16	0	16	n	0.09	4	42	4	42	n	0.00	0	14	0	14	n	0.17	4	19	4	19	y	0.06	2	30	2	30	n	0.10	1	9	1	9	n	0.10	2	19	2	19	n	ENSMUSG00000026028.13	Trak2	chr1	protein_coding	trafficking protein, kinesin binding 2
novel_NIR_952	chr1	59030295	59031366	+	59030295	59031810	A3SS	ENSMUST00000123301.8	novel	0.33	4	8	4	8	y	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	19	0	19	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	18	0	18	n	0.00	0	9	0	9	n	0.06	1	17	1	17	n	0.00	0	22	0	22	n	0.00	0	7	0	7	n	0.00	0	18	0	18	n	ENSMUSG00000026027.14	Stradb	chr1	protein_coding	STE20-related kinase adaptor beta
novel_NIR_953	chr1	59155088	59158862	-	59155088	59156001	A5SS&ES	ENSMUST00000186794.7	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038079.15	Tmem237	chr1	protein_coding	transmembrane protein 237
novel_NIR_954	chr1	59155088	59158862	-	59155088	59156490	A5SS&ES	ENSMUST00000094917.10	novel	0.22	2	7	2	7	y	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000038079.15	Tmem237	chr1	protein_coding	transmembrane protein 237
novel_NIR_955	chr1	59684329	59694617	-	59658768	59694617	A3SS	ENSMUST00000191158.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000026021.16	Sumo1	chr1	protein_coding	small ubiquitin-like modifier 1
novel_NIR_956	chr1	59684329	59694617	-	59681648	59694617	A3SS	ENSMUST00000185265.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000026021.16	Sumo1	chr1	protein_coding	small ubiquitin-like modifier 1
novel_NIR_957	chr1	59692027	59694617	-	59658768	59694617	A3SS	ENSMUST00000191158.7	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000026021.16	Sumo1	chr1	protein_coding	small ubiquitin-like modifier 1
novel_NIR_958	chr1	59692027	59694617	-	59681648	59694617	A3SS	ENSMUST00000185265.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000026021.16	Sumo1	chr1	protein_coding	small ubiquitin-like modifier 1
novel_NIR_959	chr1	59742106	59743229	+	59742106	59742295	A3SS&ES	ENSMUST00000189919.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	ENSMUSG00000026020.10	Nop58	chr1	protein_coding	NOP58 ribonucleoprotein
novel_NIR_960	chr1	59907774	59909397	+	59907774	59909394	A3SS	ENSMUST00000087435.7	novel	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.21	4	15	4	15	y	0.11	2	16	2	16	n	0.19	3	13	3	13	y	0.00	0	10	0	10	n	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.13	2	13	2	13	n	0.00	0	7	0	7	n	0.23	3	10	3	10	y	ENSMUSG00000067336.7	Bmpr2	chr1	protein_coding	bone morphogenetic protein receptor, type II (serine/threonine kinase)
novel_NIR_961	chr1	60136886	60137206	-	60136886	60137149	A5SS	ENSMUST00000143342.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	3	0	3	0	y	ENSMUSG00000026019.16	Wdr12	chr1	protein_coding	WD repeat domain 12
novel_NIR_962	chr1	60136886	60137206	-	60136886	60137204	A5SS	ENSMUST00000122038.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000026019.16	Wdr12	chr1	protein_coding	WD repeat domain 12
novel_NIR_963	chr1	60136886	60137206	-	60136886	60137302	A5SS	ENSMUST00000117438.8	novel	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.27	3	8	3	8	y	ENSMUSG00000026019.16	Wdr12	chr1	protein_coding	WD repeat domain 12
novel_NIR_964	chr1	60144586	60148486	+	60144586	60147242	A3SS&ES	ENSMUST00000187978.7	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.43	3	4	3	4	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000026017.14	Carf	chr1	protein_coding	calcium response factor
novel_NIR_965	chr1	60144586	60148486	+	60144593	60148486	A5SS	ENSMUST00000124986.8	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000026017.14	Carf	chr1	protein_coding	calcium response factor
novel_NIR_966	chr1	60144586	60148486	+	60147359	60148486	A5SS&ES	ENSMUST00000130075.8	novel	0.33	1	2	1	2	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.33	2	4	2	4	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.00	0	9	0	9	n	ENSMUSG00000026017.14	Carf	chr1	protein_coding	calcium response factor
novel_NIR_967	chr1	60220206	60220622	+	60219844	60220622	A5SS	ENSMUST00000160834.8	novel	-	-	-	-	-	-	0.33	1	2	1	2	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000073664.12	Nbeal1	chr1	protein_coding	neurobeachin like 1
novel_NIR_968	chr1	60311416	60317072	+	60311416;60316410	60316284;60317072	ES	ENSMUST00000160834.8	novel	0.00	0	2.0	0	2;2	n	0.00	0	0.5	0	1;0	n	0.29	2	5.0	2	2;8	y	0.00	0	5.0	0	3;7	n	0.00	0	3.0	0	2;4	n	0.00	0	5.0	0	7;3	n	0.00	0	3.5	0	2;5	n	0.00	0	3.0	0	1;5	n	-	-	-	-	-	-	0.00	0	5.0	0	2;8	n	-	-	-	-	-	-	0.00	0	4.5	0	1;8	n	ENSMUSG00000073664.12	Nbeal1	chr1	protein_coding	neurobeachin like 1
novel_NIR_969	chr1	60486565	60487240	+	60486565	60487237	A3SS	ENSMUST00000052332.15	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000026782.16	Abi2	chr1	protein_coding	abl interactor 2
novel_NIR_970	chr1	60490296	60532697	-	60529480	60532697	3pMXE	ENSMUST00000140485.8	novel	0.33	8	16	8	16	y	0.42	8	11	8	11	y	0.05	5	91	5	91	n	0.40	8	12	8	12	y	0.14	6	38	6	38	n	0.03	1	38	1	38	n	0.00	0	15	0	15	n	0.26	9	25	9	25	y	0.36	5	9	5	9	y	0.25	8	24	8	24	y	0.44	7	9	7	9	y	0.26	8	23	8	23	y	ENSMUSG00000026014.16	Raph1	chr1	protein_coding	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
novel_NIR_971	chr1	60490296	60532697	-	60530103	60532697	3pMXE	ENSMUST00000090293.11	novel	1.00	8	0	8	0	y	0.80	8	2	8	2	y	0.71	5	2	5	2	y	0.89	8	1	8	1	y	1.00	6	0	6	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	9	0	9	0	y	1.00	5	0	5	0	y	1.00	8	0	8	0	y	1.00	7	0	7	0	y	1.00	8	0	8	0	y	ENSMUSG00000026014.16	Raph1	chr1	protein_coding	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
novel_NIR_972	chr1	60511025	60532697	-	60529480	60532697	3pMXE	ENSMUST00000140485.8	novel	0.06	1	16	1	16	n	0.00	0	11	0	11	n	0.00	0	91	0	91	n	0.08	1	12	1	12	n	0.07	3	38	3	38	n	0.00	0	38	0	38	n	0.12	2	15	2	15	n	0.00	0	25	0	25	n	0.18	2	9	2	9	y	0.08	2	24	2	24	n	0.18	2	9	2	9	y	0.15	4	23	4	23	y	ENSMUSG00000026014.16	Raph1	chr1	protein_coding	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
novel_NIR_973	chr1	60511025	60532697	-	60530103	60532697	3pMXE	ENSMUST00000090293.11	novel	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	ENSMUSG00000026014.16	Raph1	chr1	protein_coding	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
novel_NIR_974	chr1	60522499	60527359	-	60522499	60532697	A5SS	ENSMUST00000182085.8	novel	0.02	3	128	3	128	n	0.06	11	178	11	178	n	0.16	23	121	23	121	y	0.17	18	90	18	90	y	0.04	7	158	7	158	n	0.04	7	152	7	152	n	0.07	10	125	10	125	n	0.07	9	128	9	128	n	0.05	3	59	3	59	n	0.11	10	79	10	79	n	0.07	4	54	4	54	n	0.10	9	80	9	80	n	ENSMUSG00000026014.16	Raph1	chr1	protein_coding	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
novel_NIR_975	chr1	60542754	60558139	-	60542754;60549650	60549576;60558139	ES	ENSMUST00000027168.12	novel	0.64	8	4.5	8	6;3	y	0.72	9	3.5	9	6;1	y	0.32	9	19.5	9	27;12	y	0.73	4	1.5	4	3;0	y	0.69	12	5.5	12	7;4	y	0.46	12	14.0	12	24;4	y	0.46	3	3.5	3	6;1	y	0.25	2	6.0	2	10;2	y	0.60	3	2.0	3	3;1	y	0.50	7	7.0	7	9;5	y	0.00	0	1.5	0	3;0	n	0.50	4	4.0	4	8;0	y	ENSMUSG00000026014.16	Raph1	chr1	protein_coding	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
novel_NIR_976	chr1	60542754	60564265	-	60542754	60549576	A5SS&ES	ENSMUST00000027168.12	novel	0.25	2	6	2	6	y	0.14	1	6	1	6	n	0.00	0	27	0	27	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	24	0	24	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	ENSMUSG00000026014.16	Raph1	chr1	protein_coding	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
novel_NIR_977	chr1	60549650	60564751	-	60549650;60558219	60558139;60564751	ES	ENSMUST00000027168.12	novel	0.12	1	7.5	1	3;12	n	0.43	3	4.0	3	1;7	y	0.46	11	13.0	11	12;14	y	0.00	0	3.5	0	0;7	n	0.00	0	9.5	0	4;15	n	0.43	6	8.0	6	4;12	y	0.40	3	4.5	3	1;8	y	0.00	0	5.5	0	2;9	n	0.00	0	4.0	0	1;7	n	0.00	0	4.0	0	5;3	n	0.00	0	0.5	0	0;1	n	0.00	0	3.5	0	0;7	n	ENSMUSG00000026014.16	Raph1	chr1	protein_coding	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
novel_NIR_978	chr1	60572565	60606185	-	60572565	60606213	A5SS	ENSMUST00000142258.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026014.16	Raph1	chr1	protein_coding	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
novel_NIR_979	chr1	60690352	60802138	+	60785687	60802138	5pMXE	ENSMUST00000027165.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026012.3	Cd28	chr1	protein_coding	CD28 antigen
novel_NIR_980	chr1	60759736	60782795	+	60759736	60802138	A3SS	ENSMUST00000132833.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026012.3	Cd28	chr1	protein_coding	CD28 antigen
novel_NIR_981	chr1	60782932	60802138	+	60759736	60802138	A5SS	ENSMUST00000132833.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026012.3	Cd28	chr1	protein_coding	CD28 antigen
novel_NIR_982	chr1	60782932	60802138	+	60785687	60802138	5pMXE	ENSMUST00000027165.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026012.3	Cd28	chr1	protein_coding	CD28 antigen
novel_NIR_983	chr1	62115653	62193092	+	62115653	62117285	3pMXE	ENSMUST00000138768.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000052062.15	Pard3b	chr1	protein_coding	par-3 family cell polarity regulator beta
novel_NIR_984	chr1	62115653	62193092	+	62115653;62184094	62184006;62193092	ES	ENSMUST00000075374.10	novel	0.67	2	1.0	2	0;2	y	0.00	0	2.0	0	2;2	n	0.00	0	1.0	0	0;2	n	0.00	0	2.0	0	3;1	n	0.00	0	6.0	0	3;9	n	0.00	0	3.5	0	3;4	n	0.00	0	2.5	0	3;2	n	0.29	1	2.5	1	3;2	n	0.00	0	1.5	0	0;3	n	0.00	0	4.5	0	2;7	n	0.00	0	1.0	0	0;2	n	0.00	0	3.5	0	0;7	n	ENSMUSG00000052062.15	Pard3b	chr1	protein_coding	par-3 family cell polarity regulator beta
novel_NIR_985	chr1	62496575	62505352	-	62496575	62538251	A5SS	ENSMUST00000147177.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000085400.2	Pard3bos3	chr1	lncRNA	par-3 family cell polarity regulator beta, opposite strand 3
novel_NIR_986	chr1	62505476	62538251	-	62496575	62538251	A3SS	ENSMUST00000147177.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	0.00	0	2	0	2	n	ENSMUSG00000085400.2	Pard3bos3	chr1	lncRNA	par-3 family cell polarity regulator beta, opposite strand 3
novel_NIR_987	chr1	6293926	6298164	+	6276494	6298164	A5SS	ENSMUST00000160871.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000025907.15	Rb1cc1	chr1	protein_coding	RB1-inducible coiled-coil 1
novel_NIR_988	chr1	6293926	6298164	+	6285476	6298164	A5SS	ENSMUST00000160062.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000025907.15	Rb1cc1	chr1	protein_coding	RB1-inducible coiled-coil 1
novel_NIR_989	chr1	6293926	6298164	+	6293969	6298164	A5SS	ENSMUST00000159906.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000025907.15	Rb1cc1	chr1	protein_coding	RB1-inducible coiled-coil 1
novel_NIR_990	chr1	6298273	6304185	+	6298273	6300183	3pMXE	ENSMUST00000162210.8	novel	0.17	2	10	2	10	y	0.00	0	2	0	2	n	0.08	2	22	2	22	n	0.05	1	21	1	21	n	0.00	0	15	0	15	n	0.00	0	14	0	14	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.07	1	13	1	13	n	0.00	0	12	0	12	n	0.13	2	13	2	13	n	ENSMUSG00000025907.15	Rb1cc1	chr1	protein_coding	RB1-inducible coiled-coil 1
novel_NIR_991	chr1	6298273	6304185	+	6298273;6300297	6300183;6304185	ES	ENSMUST00000159906.8	novel	0.19	2	8.5	2	10;7	y	0.00	0	3.0	0	2;4	n	0.08	2	24.0	2	22;26	n	0.04	1	23.0	1	21;25	n	0.00	0	19.5	0	15;24	n	0.00	0	17.0	0	14;20	n	0.00	0	14.5	0	14;15	n	0.00	0	14.0	0	8;20	n	0.00	0	8.0	0	8;8	n	0.06	1	16.0	1	13;19	n	0.00	0	13.0	0	12;14	n	0.11	2	16.5	2	13;20	n	ENSMUSG00000025907.15	Rb1cc1	chr1	protein_coding	RB1-inducible coiled-coil 1
novel_NIR_992	chr1	63144918	63149868	-	63144918	63153370	A5SS	ENSMUST00000165066.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040865.16	Ino80d	chr1	protein_coding	INO80 complex subunit D
novel_NIR_993	chr1	63154119	63154242	+	63154119	63183278	A3SS	ENSMUST00000188602.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000084799.8	Ino80dos	chr1	lncRNA	INO80 complex subunit D, opposite strand
novel_NIR_994	chr1	63195491	63196281	-	63195491	63215634	A5SS	ENSMUST00000185847.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	5	0	5	0	y	ENSMUSG00000025968.17	Ndufs1	chr1	protein_coding	NADH:ubiquinone oxidoreductase core subunit S1
novel_NIR_995	chr1	63204019	63205450	-	63204019	63208388	A5SS	ENSMUST00000188370.7	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000025968.17	Ndufs1	chr1	protein_coding	NADH:ubiquinone oxidoreductase core subunit S1
novel_NIR_996	chr1	63211416	63214534	-	63211416	63215745	A5SS	ENSMUST00000185827.7	novel	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.00	0	18	0	18	n	0.00	0	8	0	8	n	0.00	0	16	0	16	n	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.20	2	8	2	8	y	ENSMUSG00000025968.17	Ndufs1	chr1	protein_coding	NADH:ubiquinone oxidoreductase core subunit S1
novel_NIR_997	chr1	63211416	63214796	-	63210073	63214796	A3SS	ENSMUST00000185732.7	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.50	2	2	2	2	y	0.60	3	2	3	2	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	7	0	7	0	y	0.50	2	2	2	2	y	0.67	2	1	2	1	y	0.50	1	1	1	1	n	ENSMUSG00000025968.17	Ndufs1	chr1	protein_coding	NADH:ubiquinone oxidoreductase core subunit S1
novel_NIR_998	chr1	63211416	63214796	-	63211416	63215587	A5SS	ENSMUST00000189664.2	novel	0.00	0	7	0	7	n	0.12	1	7	1	7	n	0.15	2	11	2	11	y	0.30	3	7	3	7	y	0.15	3	17	3	17	y	0.25	2	6	2	6	y	0.18	2	9	2	9	y	0.00	0	13	0	13	n	0.47	7	8	7	8	y	0.15	2	11	2	11	y	0.18	2	9	2	9	y	0.07	1	13	1	13	n	ENSMUSG00000025968.17	Ndufs1	chr1	protein_coding	NADH:ubiquinone oxidoreductase core subunit S1
novel_NIR_999	chr1	63211416	63214796	-	63211416	63215745	A5SS	ENSMUST00000185827.7	novel	0.00	0	5	0	5	n	0.11	1	8	1	8	n	0.15	2	11	2	11	y	0.23	3	10	3	10	n	0.16	3	16	3	16	y	0.15	2	11	2	11	y	0.10	2	18	2	18	n	0.00	0	8	0	8	n	0.30	7	16	7	16	y	0.12	2	14	2	14	n	0.29	2	5	2	5	y	0.11	1	8	1	8	n	ENSMUSG00000025968.17	Ndufs1	chr1	protein_coding	NADH:ubiquinone oxidoreductase core subunit S1
novel_NIR_1000	chr1	63211416;63214847	63214796;63215745	-	63211416	63215745	cassetteExon	ENSMUST00000185827.7	novel	0.00	0.0	5	0;0	5	n	0.06	0.5	8	1;0	8	n	0.08	1.0	11	2;0	11	n	0.26	3.5	10	3;4	10	y	0.09	1.5	16	3;0	16	n	0.08	1.0	11	2;0	11	n	0.05	1.0	18	2;0	18	n	0.00	0.0	8	0;0	8	n	0.18	3.5	16	7;0	16	n	0.07	1.0	14	2;0	14	n	0.17	1.0	5	2;0	5	n	0.06	0.5	8	1;0	8	n	ENSMUSG00000025968.17	Ndufs1	chr1	protein_coding	NADH:ubiquinone oxidoreductase core subunit S1
novel_NIR_1001	chr1	63214847	63215745	-	63214847	63215587	A5SS	ENSMUST00000185732.7	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025968.17	Ndufs1	chr1	protein_coding	NADH:ubiquinone oxidoreductase core subunit S1
novel_NIR_1002	chr1	63215490	63215587	-	63211416	63215587	A3SS	ENSMUST00000189664.2	novel	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.15	2	11	2	11	y	0.30	3	7	3	7	y	0.06	1	17	1	17	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.10	1	9	1	9	n	0.00	0	13	0	13	n	ENSMUSG00000025968.17	Ndufs1	chr1	protein_coding	NADH:ubiquinone oxidoreductase core subunit S1
novel_NIR_1003	chr1	63215490	63215587	-	63214847	63215587	A3SS	ENSMUST00000185732.7	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000025968.17	Ndufs1	chr1	protein_coding	NADH:ubiquinone oxidoreductase core subunit S1
novel_NIR_1004	chr1	63215683	63215859	-	63215683	63215924	A5SS	ENSMUST00000185412.7	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000025968.17	Ndufs1	chr1	protein_coding	NADH:ubiquinone oxidoreductase core subunit S1
novel_NIR_1005	chr1	63216409	63216913	+	63216409	63216882	A3SS	ENSMUST00000135877.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	9	0	9	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	4	0	4	0	y	ENSMUSG00000025967.17	Eef1b2	chr1	protein_coding	eukaryotic translation elongation factor 1 beta 2
novel_NIR_1006	chr1	63216450	63216933	+	63216450	63216882	A3SS	ENSMUST00000148553.2	novel	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.90	9	1	9	1	y	0.00	0	4	0	4	n	ENSMUSG00000025967.17	Eef1b2	chr1	protein_coding	eukaryotic translation elongation factor 1 beta 2
novel_NIR_1007	chr1	63216450	63216933	+	63216450	63217026	A3SS	ENSMUST00000142062.8	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	9	0	9	0	y	0.00	0	3	0	3	n	ENSMUSG00000025967.17	Eef1b2	chr1	protein_coding	eukaryotic translation elongation factor 1 beta 2
novel_NIR_1008	chr1	63216450	63216933	+	63216450	63217598	A3SS	ENSMUST00000188524.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.90	9	1	9	1	y	-	-	-	-	-	-	ENSMUSG00000025967.17	Eef1b2	chr1	protein_coding	eukaryotic translation elongation factor 1 beta 2
novel_NIR_1009	chr1	64118493	64161361	-	64118493	64160059	5pMXE	ENSMUST00000114086.8	novel	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000025959.14	Klf7	chr1	protein_coding	Kruppel-like factor 7 (ubiquitous)
novel_NIR_1010	chr1	64118493	64161361	-	64118493;64160298	64160059;64161361	ES	ENSMUST00000135075.2	novel	0.80	2	0.5	2	1;0	y	0.00	0	0.5	0	0;1	n	0.00	0	3.5	0	6;1	n	0.00	0	0.5	0	1;0	n	0.00	0	1.5	0	3;0	n	0.00	0	0.5	0	1;0	n	0.00	0	3.5	0	7;0	n	0.00	0	1.5	0	3;0	n	0.00	0	0.5	0	1;0	n	0.00	0	2.5	0	5;0	n	-	-	-	-	-	-	0.00	0	1.0	0	2;0	n	ENSMUSG00000025959.14	Klf7	chr1	protein_coding	Kruppel-like factor 7 (ubiquitous)
novel_NIR_1011	chr1	64160298	64161154	-	64160298	64160545	5pMXE	ENSMUST00000055001.10	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025959.14	Klf7	chr1	protein_coding	Kruppel-like factor 7 (ubiquitous)
novel_NIR_1012	chr1	64160298	64161154	-	64160298	64161361	A5SS	ENSMUST00000135075.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025959.14	Klf7	chr1	protein_coding	Kruppel-like factor 7 (ubiquitous)
novel_NIR_1013	chr1	64605476	64609328	+	64605476	64609293	A3SS	ENSMUST00000185594.7	novel	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.29	2	5	2	5	y	0.00	0	17	0	17	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	ENSMUSG00000025958.15	Creb1	chr1	protein_coding	cAMP responsive element binding protein 1
novel_NIR_1014	chr1	64609435	64615338	+	64609435;64613414	64613232;64615338	ES	ENSMUST00000185594.7	novel	0.13	2	13.0	2	11;15	n	0.00	0	7.0	0	8;6	n	0.04	1	21.5	1	18;25	n	0.00	0	10.0	0	11;9	n	0.00	0	12.5	0	14;11	n	0.00	0	7.5	0	8;7	n	0.00	0	11.5	0	11;12	n	0.00	0	5.5	0	8;3	n	0.00	0	10.0	0	5;15	n	0.15	2	11.5	2	14;9	y	0.00	0	9.5	0	13;6	n	0.00	0	5.0	0	9;1	n	ENSMUSG00000025958.15	Creb1	chr1	protein_coding	cAMP responsive element binding protein 1
novel_NIR_1015	chr1	64655603	64656091	-	64655603	64656321	A5SS	ENSMUST00000114079.9	novel	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.18	2	9	2	9	y	0.15	2	11	2	11	y	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	ENSMUSG00000025956.11	Mettl21a	chr1	protein_coding	methyltransferase like 21A
novel_NIR_1016	chr1	64741539	64750577	+	64741539;64747637	64747537;64750577	ES	ENSMUST00000114077.8	novel	0.00	0	4.0	0	3;5	n	0.00	0	3.0	0	6;0	n	0.07	1	14.0	1	13;15	n	0.24	3	9.5	3	5;14	y	0.00	0	10.0	0	11;9	n	0.09	1	10.0	1	9;11	n	0.00	0	14.5	0	16;13	n	0.00	0	9.0	0	10;8	n	0.00	0	11.5	0	12;11	n	0.21	2	7.5	2	7;8	y	0.00	0	2.5	0	2;3	n	0.27	3	8.0	3	10;6	y	ENSMUSG00000070871.11	Ccnyl1	chr1	protein_coding	cyclin Y-like 1
novel_NIR_1017	chr1	64747637	64752270	+	64747637	64750577	3pMXE	ENSMUST00000187638.7	novel	0.00	0	5	0	5	n	1.00	2	0	2	0	y	0.00	0	15	0	15	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	ENSMUSG00000070871.11	Ccnyl1	chr1	protein_coding	cyclin Y-like 1
novel_NIR_1018	chr1	64747637	64752270	+	64747637;64750612	64750577;64752270	ES	ENSMUST00000114077.8	novel	0.00	0	4.5	0	5;4	n	0.67	2	1.0	2	0;2	y	0.00	0	13.0	0	15;11	n	0.00	0	12.5	0	14;11	n	0.00	0	12.0	0	9;15	n	0.00	0	9.0	0	11;7	n	0.00	0	12.5	0	13;12	n	0.00	0	8.0	0	8;8	n	0.00	0	9.0	0	11;7	n	0.00	0	12.0	0	8;16	n	0.00	0	2.5	0	3;2	n	0.00	0	8.5	0	6;11	n	ENSMUSG00000070871.11	Ccnyl1	chr1	protein_coding	cyclin Y-like 1
novel_NIR_1019	chr1	64752321	64757290	+	64752321;64753847	64753728;64757290	ES	ENSMUST00000114077.8	novel	0.00	0	8.0	0	8;8	n	0.00	0	9.0	0	10;8	n	0.00	0	14.0	0	15;13	n	0.00	0	10.0	0	8;12	n	0.00	0	21.5	0	21;22	n	0.00	0	7.0	0	4;10	n	0.00	0	13.5	0	12;15	n	0.00	0	9.5	0	9;10	n	0.00	0	4.0	0	2;6	n	0.00	0	11.0	0	15;7	n	0.00	0	4.5	0	2;7	n	0.24	2	6.5	2	8;5	y	ENSMUSG00000070871.11	Ccnyl1	chr1	protein_coding	cyclin Y-like 1
novel_NIR_1020	chr1	65214527	65225368	-	65214527	65214671	5pMXE	ENSMUST00000149310.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000025950.17	Idh1	chr1	protein_coding	isocitrate dehydrogenase 1 (NADP+), soluble
novel_NIR_1021	chr1	65214527	65225368	-	65214527	65218922	A5SS&ES	ENSMUST00000191459.2	novel	0.00	0	4	0	4	n	0.67	2	1	2	1	y	0.75	3	1	3	1	y	0.00	0	8	0	8	n	0.17	2	10	2	10	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.40	2	3	2	3	y	1.00	2	0	2	0	y	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	ENSMUSG00000025950.17	Idh1	chr1	protein_coding	isocitrate dehydrogenase 1 (NADP+), soluble
novel_NIR_1022	chr1	65214527	65225368	-	65214527	65220787	A5SS&ES	ENSMUST00000188876.7	novel	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.50	3	3	3	3	y	0.00	0	5	0	5	n	0.40	2	3	2	3	y	0.33	1	2	1	2	n	0.33	1	2	1	2	n	1.00	2	0	2	0	y	0.33	2	4	2	4	y	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	ENSMUSG00000025950.17	Idh1	chr1	protein_coding	isocitrate dehydrogenase 1 (NADP+), soluble
novel_NIR_1023	chr1	65214527	65225368	-	65214527	65225464	A5SS	ENSMUST00000169032.8	novel	0.00	0	9	0	9	n	0.29	2	5	2	5	y	0.23	3	10	3	10	y	0.00	0	7	0	7	n	0.15	2	11	2	11	y	0.08	1	12	1	12	n	0.14	1	6	1	6	n	0.40	2	3	2	3	y	0.20	2	8	2	8	y	0.00	0	21	0	21	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	ENSMUSG00000025950.17	Idh1	chr1	protein_coding	isocitrate dehydrogenase 1 (NADP+), soluble
novel_NIR_1024	chr1	65214527	65225368	-	65214527;65218974	65218922;65225368	ES	ENSMUST00000186222.7	novel	0.00	0	2.0	0	4;0	n	0.80	2	0.5	2	1;0	y	0.86	3	0.5	3	1;0	y	0.00	0	4.0	0	8;0	n	0.29	2	5.0	2	10;0	y	1.00	1	0.0	1	0;0	n	1.00	1	0.0	1	0;0	n	0.57	2	1.5	2	3;0	y	1.00	2	0.0	2	0;0	y	0.00	0	4.0	0	8;0	n	0.00	0	2.0	0	4;0	n	0.00	0	1.5	0	3;0	n	ENSMUSG00000025950.17	Idh1	chr1	protein_coding	isocitrate dehydrogenase 1 (NADP+), soluble
novel_NIR_1025	chr1	65214527	65225556	-	65214527	65214671	5pMXE	ENSMUST00000149310.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.50	2	2	2	2	y	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000025950.17	Idh1	chr1	protein_coding	isocitrate dehydrogenase 1 (NADP+), soluble
novel_NIR_1026	chr1	65214527	65225556	-	65214527	65218922	A5SS&ES	ENSMUST00000186222.7	novel	0.00	0	4	0	4	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.09	1	10	1	10	n	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	1.00	2	0	2	0	y	0.20	2	8	2	8	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	ENSMUSG00000025950.17	Idh1	chr1	protein_coding	isocitrate dehydrogenase 1 (NADP+), soluble
novel_NIR_1027	chr1	65214527	65225556	-	65214527	65220787	A5SS&ES	ENSMUST00000188876.7	novel	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.33	2	4	2	4	y	0.18	2	9	2	9	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	ENSMUSG00000025950.17	Idh1	chr1	protein_coding	isocitrate dehydrogenase 1 (NADP+), soluble
novel_NIR_1028	chr1	65214527	65225556	-	65214527	65225464	A5SS	ENSMUST00000169032.8	novel	0.00	0	9	0	9	n	0.17	1	5	1	5	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.08	1	11	1	11	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.40	2	3	2	3	y	0.20	2	8	2	8	y	0.09	2	21	2	21	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	ENSMUSG00000025950.17	Idh1	chr1	protein_coding	isocitrate dehydrogenase 1 (NADP+), soluble
novel_NIR_1029	chr1	65218974	65225464	-	65214527	65225464	A3SS	ENSMUST00000169032.8	novel	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.23	3	10	3	10	y	0.22	2	7	2	7	y	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.33	3	6	3	6	y	0.25	1	3	1	3	n	0.00	0	8	0	8	n	0.09	2	21	2	21	n	0.20	1	4	1	4	n	0.00	0	13	0	13	n	ENSMUSG00000025950.17	Idh1	chr1	protein_coding	isocitrate dehydrogenase 1 (NADP+), soluble
novel_NIR_1030	chr1	65218974	65225464	-	65218974	65225368	A5SS	ENSMUST00000186222.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000025950.17	Idh1	chr1	protein_coding	isocitrate dehydrogenase 1 (NADP+), soluble
novel_NIR_1031	chr1	65218974	65225464	-	65218974;65220857	65220787;65225464	ES	ENSMUST00000191459.2	novel	0.00	0	1.5	0	1;2	n	0.00	0	1.0	0	0;2	n	0.75	3	1.0	3	0;2	y	0.50	2	2.0	2	0;4	y	0.00	0	4.0	0	1;7	n	0.00	0	1.0	0	0;2	n	1.00	3	0.0	3	0;0	y	0.40	1	1.5	1	0;3	n	0.00	0	2.0	0	0;4	n	0.29	2	5.0	2	3;7	y	0.25	1	3.0	1	3;3	n	0.00	0	2.5	0	0;5	n	ENSMUSG00000025950.17	Idh1	chr1	protein_coding	isocitrate dehydrogenase 1 (NADP+), soluble
novel_NIR_1032	chr1	65218974	65225464	-	65220857	65225464	A3SS&ES	ENSMUST00000188876.7	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.60	3	2	3	2	y	0.33	2	4	2	4	y	0.00	0	7	0	7	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.22	2	7	2	7	y	0.25	1	3	1	3	n	0.00	0	5	0	5	n	ENSMUSG00000025950.17	Idh1	chr1	protein_coding	isocitrate dehydrogenase 1 (NADP+), soluble
novel_NIR_1033	chr1	65220857	65225368	-	65218974	65225368	A3SS	ENSMUST00000186222.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000025950.17	Idh1	chr1	protein_coding	isocitrate dehydrogenase 1 (NADP+), soluble
novel_NIR_1034	chr1	65220857	65225368	-	65220857	65225464	A5SS	ENSMUST00000188876.7	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.12	1	7	1	7	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.40	2	3	2	3	y	0.00	0	5	0	5	n	ENSMUSG00000025950.17	Idh1	chr1	protein_coding	isocitrate dehydrogenase 1 (NADP+), soluble
novel_NIR_1035	chr1	65302134	65304408	+	65302134;65303589	65303506;65304408	ES	ENSMUST00000081154.14	novel	0.00	0	7.0	0	5;9	n	0.00	0	6.0	0	6;6	n	0.00	0	14.5	0	13;16	n	0.00	0	8.5	0	10;7	n	0.00	0	12.0	0	15;9	n	0.00	0	7.5	0	7;8	n	0.15	2	11.5	2	10;13	y	0.00	0	7.0	0	5;9	n	0.00	0	7.5	0	4;11	n	0.00	0	12.5	0	6;19	n	0.00	0	9.5	0	7;12	n	0.09	2	20.5	2	17;24	n	ENSMUSG00000025949.17	Pikfyve	chr1	protein_coding	phosphoinositide kinase, FYVE type zinc finger containing
novel_NIR_1036	chr1	66765964	66767603	-	66765967	66767603	A3SS	ENSMUST00000129190.8	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.31	4	9	4	9	y	0.40	2	3	2	3	y	1.00	2	0	2	0	y	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.29	2	5	2	5	y	ENSMUSG00000026004.16	Kansl1l	chr1	protein_coding	KAT8 regulatory NSL complex subunit 1-like
novel_NIR_1037	chr1	66773478	66774796	-	66765967	66774796	A3SS	ENSMUST00000068168.10	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.33	2	4	2	4	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	ENSMUSG00000026004.16	Kansl1l	chr1	protein_coding	KAT8 regulatory NSL complex subunit 1-like
novel_NIR_1038	chr1	66773478	66774796	-	66767734	66774796	A3SS	ENSMUST00000129190.8	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.33	2	4	2	4	y	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	ENSMUSG00000026004.16	Kansl1l	chr1	protein_coding	KAT8 regulatory NSL complex subunit 1-like
novel_NIR_1039	chr1	66777372	66812065	-	66777372;66801411	66801207;66812065	ES	ENSMUST00000129190.8	novel	0.00	0	12.5	0	6;19	n	0.00	0	7.0	0	4;10	n	0.00	0	10.0	0	8;12	n	0.08	1	11.5	1	8;15	n	0.00	0	14.5	0	12;17	n	0.00	0	2.5	0	1;4	n	0.05	1	19.0	1	16;22	n	0.21	2	7.5	2	7;8	y	0.00	0	13.0	0	12;14	n	0.00	0	10.0	0	7;13	n	0.00	0	10.0	0	10;10	n	0.00	0	20.5	0	27;14	n	ENSMUSG00000026004.16	Kansl1l	chr1	protein_coding	KAT8 regulatory NSL complex subunit 1-like
novel_NIR_1040	chr1	66801372	66812065	-	66801411	66812065	A3SS	ENSMUST00000129190.8	novel	0.00	0	19	0	19	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.00	0	17	0	17	n	0.00	0	4	0	4	n	0.04	1	22	1	22	n	0.00	0	8	0	8	n	0.12	2	14	2	14	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.18	3	14	3	14	y	ENSMUSG00000026004.16	Kansl1l	chr1	protein_coding	KAT8 regulatory NSL complex subunit 1-like
novel_NIR_1041	chr1	66817267	66818688	-	66817267	66840208	A5SS	ENSMUST00000129190.8	novel	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.00	0	6	0	6	n	0.08	1	12	1	12	n	0.00	0	6	0	6	n	0.22	2	7	2	7	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.42	5	7	5	7	y	0.06	1	17	1	17	n	ENSMUSG00000026004.16	Kansl1l	chr1	protein_coding	KAT8 regulatory NSL complex subunit 1-like
novel_NIR_1042	chr1	66818792	66840208	-	66817267	66840208	A3SS	ENSMUST00000129190.8	novel	0.00	0	4	0	4	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.33	3	6	3	6	y	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.25	2	6	2	6	y	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.11	2	17	2	17	n	ENSMUSG00000026004.16	Kansl1l	chr1	protein_coding	KAT8 regulatory NSL complex subunit 1-like
novel_NIR_1043	chr1	66896713	66901429	-	66896713	66897402	5pMXE	ENSMUST00000139208.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000026003.6	Acadl	chr1	protein_coding	acyl-Coenzyme A dehydrogenase, long-chain
novel_NIR_1044	chr1	71636546	71644129	-	71643088	71644129	A3SS&ES	ENSMUST00000188894.7	novel	0.25	2	6	2	6	y	0.00	0	4	0	4	n	0.00	0	89	0	89	n	0.00	0	2	0	2	n	0.00	0	24	0	24	n	0.00	0	57	0	57	n	0.00	0	12	0	12	n	0.00	0	23	0	23	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000026193.16	Fn1	chr1	protein_coding	fibronectin 1
novel_NIR_1045	chr1	71636608	71636801	-	71636546	71636801	A3SS	ENSMUST00000187627.2	novel	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	58	0	58	n	-	-	-	-	-	-	0.61	14	9	14	9	y	0.00	0	55	0	55	n	0.00	0	41	0	41	n	0.00	0	44	0	44	n	0.00	0	8	0	8	n	0.00	0	27	0	27	n	0.00	0	9	0	9	n	0.00	0	16	0	16	n	ENSMUSG00000026193.16	Fn1	chr1	protein_coding	fibronectin 1
novel_NIR_1046	chr1	71636671	71636801	-	71636546	71636801	A3SS	ENSMUST00000187627.2	novel	0.00	0	12	0	12	n	0.24	4	13	4	13	y	0.36	33	58	33	58	y	1.00	15	0	15	0	y	0.00	0	9	0	9	n	0.00	0	55	0	55	n	0.00	0	41	0	41	n	0.00	0	44	0	44	n	0.00	0	8	0	8	n	0.00	0	27	0	27	n	0.00	0	9	0	9	n	0.00	0	16	0	16	n	ENSMUSG00000026193.16	Fn1	chr1	protein_coding	fibronectin 1
novel_NIR_1047	chr1	71641656	71644125	-	71641656	71642819	A5SS&ES	ENSMUST00000188894.7	novel	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	117	0	117	n	0.00	0	10	0	10	n	0.00	0	30	0	30	n	0.00	0	70	0	70	n	0.00	0	27	0	27	n	0.00	0	41	0	41	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.20	2	8	2	8	y	ENSMUSG00000026193.16	Fn1	chr1	protein_coding	fibronectin 1
novel_NIR_1048	chr1	71688484	71690680	-	71688484	71691991	A5SS	ENSMUST00000186736.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026193.16	Fn1	chr1	protein_coding	fibronectin 1
novel_NIR_1049	chr1	7190823	7217861	+	7159440	7217861	A5SS	ENSMUST00000182114.8	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.91	10	1	10	1	y	0.50	1	1	1	1	n	0.67	4	2	4	2	y	ENSMUSG00000051285.18	Pcmtd1	chr1	protein_coding	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1
novel_NIR_1050	chr1	71927873	71930515	+	71927873	71929851	3pMXE	ENSMUST00000189680.7	novel	0.00	0	5	0	5	n	0.00	0	16	0	16	n	0.19	6	26	6	26	y	0.00	0	18	0	18	n	0.00	0	28	0	28	n	0.00	0	13	0	13	n	0.00	0	22	0	22	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	25	0	25	n	0.00	0	8	0	8	n	0.00	0	24	0	24	n	ENSMUSG00000099707.7	Gm8883	chr1	lncRNA	predicted gene 8883
novel_NIR_1051	chr1	71929609	71929851	+	71927873	71929851	A5SS	ENSMUST00000189680.7	novel	0.50	5	5	5	5	y	0.53	18	16	18	16	y	0.52	28	26	28	26	y	0.28	7	18	7	18	y	0.24	9	28	9	28	y	0.55	16	13	16	13	y	0.29	9	22	9	22	y	0.52	12	11	12	11	y	0.42	11	15	11	15	y	0.26	9	25	9	25	y	0.43	6	8	6	8	y	0.20	6	24	6	24	y	ENSMUSG00000099707.7	Gm8883	chr1	lncRNA	predicted gene 8883
novel_NIR_1052	chr1	71929625	71929851	+	71927873	71929851	A5SS	ENSMUST00000189680.7	novel	0.29	2	5	2	5	y	0.06	1	16	1	16	n	0.19	6	26	6	26	y	0.05	1	18	1	18	n	0.03	1	28	1	28	n	0.00	0	13	0	13	n	0.00	0	22	0	22	n	0.15	2	11	2	11	y	0.00	0	15	0	15	n	0.04	1	25	1	25	n	0.00	0	8	0	8	n	0.00	0	24	0	24	n	ENSMUSG00000099707.7	Gm8883	chr1	lncRNA	predicted gene 8883
novel_NIR_1053	chr1	71936059	71938168	-	71936059	71938017	5pMXE	ENSMUST00000189983.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000101211.2	Gm28818	chr1	lncRNA	predicted gene 28818
novel_NIR_1054	chr1	71936059	71938168	-	71936059	71956129	A5SS	ENSMUST00000187553.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000101211.2	Gm28818	chr1	lncRNA	predicted gene 28818
novel_NIR_1055	chr1	72298592	72306566	-	72306329	72306566	3pMXE	ENSMUST00000097698.5	novel	0.00	0	20	0	20	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.06	1	15	1	15	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.18	2	9	2	9	y	0.00	0	10	0	10	n	0.00	0	10	0	10	n	ENSMUSG00000026189.14	Pecr	chr1	protein_coding	peroxisomal trans-2-enoyl-CoA reductase
novel_NIR_1056	chr1	72314126	72316446	-	72314126;72314961	72314812;72316446	ES	ENSMUST00000134840.8	novel	1.00	11	0.0	11	0;0	y	1.00	9	0.0	9	0;0	y	-	-	-	-	-	-	1.00	11	0.0	11	0;0	y	1.00	15	0.0	15	0;0	y	1.00	5	0.0	5	0;0	y	1.00	8	0.0	8	0;0	y	1.00	5	0.0	5	0;0	y	1.00	11	0.0	11	0;0	y	1.00	6	0.0	6	0;0	y	1.00	12	0.0	12	0;0	y	1.00	13	0.0	13	0;0	y	ENSMUSG00000026189.14	Pecr	chr1	protein_coding	peroxisomal trans-2-enoyl-CoA reductase
novel_NIR_1057	chr1	7233595	7237007	+	7233595	7236533	A3SS&ES	ENSMUST00000183204.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000051285.18	Pcmtd1	chr1	protein_coding	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1
novel_NIR_1058	chr1	72346726	72349598	+	72346726	72349594	A3SS	ENSMUST00000027379.10	novel	0.13	2	13	2	13	n	0.00	0	15	0	15	n	0.11	3	24	3	24	n	0.06	2	33	2	33	n	0.04	1	24	1	24	n	0.00	0	21	0	21	n	0.15	3	17	3	17	y	0.00	0	19	0	19	n	0.00	0	24	0	24	n	0.00	0	29	0	29	n	0.00	0	15	0	15	n	0.00	0	25	0	25	n	ENSMUSG00000026187.10	Xrcc5	chr1	protein_coding	X-ray repair complementing defective repair in Chinese hamster cells 5
novel_NIR_1059	chr1	72667360	72668320	+	72667360	72668534	A3SS	ENSMUST00000047615.15	novel	0.00	0	36	0	36	n	0.00	0	46	0	46	n	0.21	4	15	4	15	y	0.00	0	25	0	25	n	0.00	0	36	0	36	n	0.00	0	12	0	12	n	0.00	0	46	0	46	n	0.07	1	14	1	14	n	0.00	0	27	0	27	n	0.00	0	31	0	31	n	0.00	0	29	0	29	n	0.00	0	34	0	34	n	ENSMUSG00000039354.17	Smarcal1	chr1	protein_coding	SWI/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1
novel_NIR_1060	chr1	72864645	72888245	+	72864633	72888245	A5SS	ENSMUST00000120564.2	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	ENSMUSG00000039323.19	Igfbp2	chr1	protein_coding	insulin-like growth factor binding protein 2
novel_NIR_1061	chr1	72864797	72888245	+	72864633	72888245	A5SS	ENSMUST00000120564.2	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	ENSMUSG00000039323.19	Igfbp2	chr1	protein_coding	insulin-like growth factor binding protein 2
novel_NIR_1062	chr1	72871785	72888245	+	72864633	72888245	A5SS	ENSMUST00000120564.2	novel	0.00	0	3	0	3	n	0.25	1	3	1	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.25	3	9	3	9	y	ENSMUSG00000039323.19	Igfbp2	chr1	protein_coding	insulin-like growth factor binding protein 2
novel_NIR_1063	chr1	72876728	72888245	+	72864633	72888245	A5SS	ENSMUST00000120564.2	novel	0.73	8	3	8	3	y	0.62	5	3	5	3	y	-	-	-	-	-	-	1.00	5	0	5	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.60	3	2	3	2	y	-	-	-	-	-	-	0.53	8	7	8	7	y	0.58	7	5	7	5	y	0.78	7	2	7	2	y	0.00	0	9	0	9	n	ENSMUSG00000039323.19	Igfbp2	chr1	protein_coding	insulin-like growth factor binding protein 2
novel_NIR_1064	chr1	72903239	72909763	-	72903239	72912965	A5SS	ENSMUST00000027377.9	novel	0.07	1	13	1	13	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.29	5	12	5	12	y	0.17	1	5	1	5	n	0.00	0	10	0	10	n	0.09	1	10	1	10	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.26	5	14	5	14	y	0.67	2	1	2	1	y	0.30	3	7	3	7	y	ENSMUSG00000026185.9	Igfbp5	chr1	protein_coding	insulin-like growth factor binding protein 5
novel_NIR_1065	chr1	73967269	73968326	-	73967269	73967620	5pMXE	ENSMUST00000187691.7	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	6	0	6	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	7	0	7	0	y	ENSMUSG00000055322.17	Tns1	chr1	protein_coding	tensin 1
novel_NIR_1066	chr1	73967269	73968326	-	73967269	73969476	A5SS	ENSMUST00000185529.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	0.56	5	4	5	4	y	1.00	2	0	2	0	y	0.83	5	1	5	1	y	0.75	6	2	6	2	y	1.00	1	0	1	0	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.67	2	1	2	1	y	1.00	1	0	1	0	n	0.88	7	1	7	1	y	ENSMUSG00000055322.17	Tns1	chr1	protein_coding	tensin 1
novel_NIR_1067	chr1	73967269	73968326	-	73967269	73969922	A5SS	ENSMUST00000185264.7	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	5	0	5	0	y	0.50	2	2	2	2	y	1.00	5	0	5	0	y	0.86	6	1	6	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.50	2	2	2	2	y	1.00	1	0	1	0	n	0.88	7	1	7	1	y	ENSMUSG00000055322.17	Tns1	chr1	protein_coding	tensin 1
novel_NIR_1068	chr1	73967269	73968326	-	73967269	73975057	A5SS	ENSMUST00000169786.8	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	0.71	5	2	5	2	y	0.50	2	2	2	2	y	1.00	5	0	5	0	y	1.00	6	0	6	0	y	0.10	1	9	1	9	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	7	0	7	0	y	ENSMUSG00000055322.17	Tns1	chr1	protein_coding	tensin 1
novel_NIR_1069	chr1	73967269	73968326	-	73967269	73975491	A5SS	ENSMUST00000185331.7	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	6	0	6	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	7	0	7	0	y	ENSMUSG00000055322.17	Tns1	chr1	protein_coding	tensin 1
novel_NIR_1070	chr1	73967269	73968326	-	73967269	73976384	A5SS	ENSMUST00000187584.7	novel	0.00	0	35	0	35	n	0.09	3	32	3	32	n	0.16	5	27	5	27	y	0.06	2	31	2	31	n	0.07	5	64	5	64	n	0.18	6	27	6	27	y	0.02	1	48	1	48	n	0.00	0	27	0	27	n	0.07	2	28	2	28	n	0.05	2	35	2	35	n	0.05	1	18	1	18	n	0.14	7	44	7	44	n	ENSMUSG00000055322.17	Tns1	chr1	protein_coding	tensin 1
novel_NIR_1071	chr1	73981265;73986134	73986051;73991580	-	73981265	73991580	cassetteExon	ENSMUST00000169786.8	novel	0.04	1.5	40	0;3	40	n	0.00	0.0	21	0;0	21	n	0.00	0.0	28	0;0	28	n	0.02	0.5	25	0;1	25	n	0.01	0.5	51	0;1	51	n	0.00	0.0	16	0;0	16	n	0.27	13.5	36	8;19	36	y	0.02	0.5	24	1;0	24	n	0.02	0.5	30	1;0	30	n	0.00	0.0	34	0;0	34	n	0.00	0.0	14	0;0	14	n	0.00	0.0	19	0;0	19	n	ENSMUSG00000055322.17	Tns1	chr1	protein_coding	tensin 1
novel_NIR_1072	chr1	74042717	74052198	-	74042717	74055304	A5SS	ENSMUST00000169786.8	novel	0.35	6	11	6	11	y	0.00	0	13	0	13	n	0.00	0	17	0	17	n	0.00	0	16	0	16	n	0.00	0	37	0	37	n	0.07	1	13	1	13	n	0.00	0	28	0	28	n	0.00	0	25	0	25	n	0.00	0	8	0	8	n	0.00	0	34	0	34	n	0.00	0	17	0	17	n	0.00	0	20	0	20	n	ENSMUSG00000055322.17	Tns1	chr1	protein_coding	tensin 1
novel_NIR_1073	chr1	74055345	74098813	-	74055345	74055557	5pMXE	ENSMUST00000186381.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000055322.17	Tns1	chr1	protein_coding	tensin 1
novel_NIR_1074	chr1	74055345	74098813	-	74055345	74076018	5pMXE	ENSMUST00000190599.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000055322.17	Tns1	chr1	protein_coding	tensin 1
novel_NIR_1075	chr1	74055345	74098813	-	74055345	74076130	5pMXE	ENSMUST00000187281.7	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000055322.17	Tns1	chr1	protein_coding	tensin 1
novel_NIR_1076	chr1	74105789	74107768	-	74055345	74107768	A3SS	ENSMUST00000169786.8	novel	0.12	1	7	1	7	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.40	2	3	2	3	y	0.00	0	35	0	35	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	ENSMUSG00000055322.17	Tns1	chr1	protein_coding	tensin 1
novel_NIR_1077	chr1	74107805	74107975	-	74107805	74118358	A5SS	ENSMUST00000169786.8	novel	1.00	3	0	3	0	y	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	10	0	10	0	y	1.00	7	0	7	0	y	-	-	-	-	-	-	0.80	8	2	8	2	y	0.56	5	4	5	4	y	-	-	-	-	-	-	0.64	7	4	7	4	y	0.60	3	2	3	2	y	1.00	7	0	7	0	y	ENSMUSG00000055322.17	Tns1	chr1	protein_coding	tensin 1
novel_NIR_1078	chr1	74107805	74108500	-	74107805	74118358	A5SS	ENSMUST00000169786.8	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000055322.17	Tns1	chr1	protein_coding	tensin 1
novel_NIR_1079	chr1	74275710	74275977	+	74275481	74275977	A5SS	ENSMUST00000185733.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000006304.15	Arpc2	chr1	protein_coding	actin related protein 2/3 complex, subunit 2
novel_NIR_1080	chr1	74275933	74275977	+	74275481	74275977	A5SS	ENSMUST00000185733.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000006304.15	Arpc2	chr1	protein_coding	actin related protein 2/3 complex, subunit 2
novel_NIR_1081	chr1	74325169	74326297	+	74325169	74386544	A3SS	ENSMUST00000027370.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000026179.15	Pnkd	chr1	protein_coding	paroxysmal nonkinesiogenic dyskinesia
novel_NIR_1082	chr1	74325169	74326300	+	74325169	74386544	A3SS	ENSMUST00000027370.13	novel	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.83	5	1	5	1	y	-	-	-	-	-	-	0.92	12	1	12	1	y	ENSMUSG00000026179.15	Pnkd	chr1	protein_coding	paroxysmal nonkinesiogenic dyskinesia
novel_NIR_1083	chr1	74432113	74432437	+	74431408	74432437	A5SS	ENSMUST00000152659.2	novel	0.50	1	1	1	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.73	11	4	11	4	y	0.00	0	1	0	1	n	0.70	7	3	7	3	y	0.30	3	7	3	7	y	0.62	10	6	10	6	y	0.67	16	8	16	8	y	0.00	0	4	0	4	n	0.56	5	4	5	4	y	ENSMUSG00000026176.14	Ctdsp1	chr1	protein_coding	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1
novel_NIR_1084	chr1	74480756	74483572	-	74480760	74483572	A3SS	ENSMUST00000044260.11	novel	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.33	2	4	2	4	y	ENSMUSG00000033364.14	Usp37	chr1	protein_coding	ubiquitin specific peptidase 37
novel_NIR_1085	chr1	74618835	74624543	-	74617446	74624543	A3SS	ENSMUST00000066986.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000026135.18	Zfp142	chr1	protein_coding	zinc finger protein 142
novel_NIR_1086	chr1	74618835	74624543	-	74618565	74624543	A3SS	ENSMUST00000127921.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026135.18	Zfp142	chr1	protein_coding	zinc finger protein 142
novel_NIR_1087	chr1	74618835	74624543	-	74618608	74624543	A3SS	ENSMUST00000156613.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026135.18	Zfp142	chr1	protein_coding	zinc finger protein 142
novel_NIR_1088	chr1	74618835	74624543	-	74618777	74624543	A3SS	ENSMUST00000113737.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.40	2	3	2	3	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000026135.18	Zfp142	chr1	protein_coding	zinc finger protein 142
novel_NIR_1089	chr1	74618835	74624543	-	74619086	74624543	A3SS	ENSMUST00000027315.14	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000026135.18	Zfp142	chr1	protein_coding	zinc finger protein 142
novel_NIR_1090	chr1	74701048	74718057	+	74701048	74712003	3pMXE	ENSMUST00000153636.8	novel	0.20	1	4	1	4	n	0.00	0	5	0	5	n	0.07	1	13	1	13	n	0.00	0	14	0	14	n	0.33	4	8	4	8	y	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	ENSMUSG00000033257.15	Ttll4	chr1	protein_coding	tubulin tyrosine ligase-like family, member 4
novel_NIR_1091	chr1	74701048	74718057	+	74701048;74712169	74712003;74718057	ES	ENSMUST00000042125.15	novel	0.15	1	5.5	1	4;7	n	0.00	0	5.5	0	5;6	n	0.07	1	14.0	1	13;15	n	0.00	0	17.0	0	14;20	n	0.21	4	15.5	4	8;23	y	0.00	0	4.0	0	5;3	n	0.00	0	7.5	0	7;8	n	0.00	0	4.0	0	2;6	n	0.00	0	4.5	0	5;4	n	0.00	0	11.0	0	12;10	n	0.00	0	4.0	0	4;4	n	0.00	0	9.5	0	4;15	n	ENSMUSG00000033257.15	Ttll4	chr1	protein_coding	tubulin tyrosine ligase-like family, member 4
novel_NIR_1092	chr1	74701048	74771078	+	74701048	74712003	3pMXE	ENSMUST00000153636.8	novel	0.33	2	4	2	4	y	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	ENSMUSG00000033257.15	Ttll4	chr1	protein_coding	tubulin tyrosine ligase-like family, member 4
novel_NIR_1093	chr1	74701048;74718294	74718057;74719513	+	74701048;74712169	74712003;74719513	MXE	ENSMUST00000129890.8	novel	0.20	0.5	2.0	1;0	4;0	n	0.00	0.0	2.5	0;0	5;0	n	0.07	0.5	6.5	1;0	13;0	n	0.00	0.0	7.5	0;0	14;1	n	0.43	3.0	4.0	4;2	8;0	y	0.00	0.0	2.5	0;0	5;0	n	0.00	0.0	3.5	0;0	7;0	n	0.00	0.0	1.0	0;0	2;0	n	0.00	0.0	2.5	0;0	5;0	n	0.00	0.0	6.0	0;0	12;0	n	0.20	0.5	2.0	0;1	4;0	n	0.00	0.0	2.0	0;0	4;0	n	ENSMUSG00000033257.15	Ttll4	chr1	protein_coding	tubulin tyrosine ligase-like family, member 4
novel_NIR_1094	chr1	74718294	74719513	+	74718090	74719513	A5SS	ENSMUST00000141119.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000033257.15	Ttll4	chr1	protein_coding	tubulin tyrosine ligase-like family, member 4
novel_NIR_1095	chr1	75097396	75101780	-	75097474	75101780	A3SS	ENSMUST00000152855.3	novel	0.00	0	4	0	4	n	0.67	4	2	4	2	y	0.20	1	4	1	4	n	0.60	3	2	3	2	y	0.43	3	4	3	4	y	1.00	3	0	3	0	y	0.20	1	4	1	4	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.43	3	4	3	4	y	0.38	5	8	5	8	y	ENSMUSG00000026162.9	Nhej1	chr1	protein_coding	non-homologous end joining factor 1
novel_NIR_1096	chr1	75097474	75097877	-	75097474	75101780	A5SS	ENSMUST00000152855.3	novel	0.20	1	4	1	4	n	0.33	1	2	1	2	n	0.33	2	4	2	4	n	0.50	2	2	2	2	n	0.00	0	4	0	4	n	1.00	2	0	2	0	n	0.33	2	4	2	4	n	0.25	2	6	2	6	y	1.00	2	0	2	0	n	0.25	1	3	1	3	n	0.33	2	4	2	4	n	0.11	1	8	1	8	n	ENSMUSG00000026162.9	Nhej1	chr1	protein_coding	non-homologous end joining factor 1
novel_NIR_1097	chr1	75097474;75097970	75097877;75101780	-	75097474	75101780	cassetteExon	ENSMUST00000152855.3	novel	0.11	0.5	4	1;0	4	n	0.33	1.0	2	1;1	2	n	0.50	4.0	4	2;6	4	y	0.43	1.5	2	2;1	2	n	0.33	2.0	4	0;4	4	n	1.00	1.5	0	2;1	0	n	0.50	4.0	4	2;6	4	y	0.14	1.0	6	2;0	6	n	1.00	1.5	0	2;1	0	n	0.45	2.5	3	1;4	3	n	0.27	1.5	4	2;1	4	n	0.06	0.5	8	1;0	8	n	ENSMUSG00000026162.9	Nhej1	chr1	protein_coding	non-homologous end joining factor 1
novel_NIR_1098	chr1	75097970	75101780	-	75097474	75101780	A3SS	ENSMUST00000152855.3	novel	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.60	6	4	6	4	n	0.33	1	2	1	2	n	0.50	4	4	4	4	y	1.00	1	0	1	0	n	0.60	6	4	6	4	n	0.00	0	6	0	6	n	1.00	1	0	1	0	n	0.57	4	3	4	3	n	0.20	1	4	1	4	n	0.00	0	8	0	8	n	ENSMUSG00000026162.9	Nhej1	chr1	protein_coding	non-homologous end joining factor 1
novel_NIR_1099	chr1	75120597	75121005	+	75120597	75121036	A3SS	ENSMUST00000188873.7	novel	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.41	7	10	7	10	y	0.00	0	8	0	8	n	0.40	2	3	2	3	y	0.67	10	5	10	5	y	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.56	15	12	15	12	y	0.50	5	5	5	5	y	0.00	0	16	0	16	n	ENSMUSG00000049339.17	Retreg2	chr1	protein_coding	reticulophagy regulator family member 2
novel_NIR_1100	chr1	75161223	75161333	-	75159760	75161333	A3SS	ENSMUST00000187785.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000033124.17	Atg9a	chr1	protein_coding	autophagy related 9A
novel_NIR_1101	chr1	75169266	75170822	+	75169321	75170822	A5SS	ENSMUST00000152233.9	novel	0.00	0	20	0	20	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	23	0	23	n	0.00	0	24	0	24	n	0.10	1	9	1	9	n	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.00	0	21	0	21	n	0.32	7	15	7	15	y	0.19	4	17	4	17	y	ENSMUSG00000026199.18	Ankzf1	chr1	protein_coding	ankyrin repeat and zinc finger domain containing 1
novel_NIR_1102	chr1	75172592	75172725	+	75172592	75172797	A3SS	ENSMUST00000152233.9	novel	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.06	1	15	1	15	n	0.08	1	12	1	12	n	0.00	0	25	0	25	n	0.00	0	13	0	13	n	0.04	1	22	1	22	n	0.08	1	11	1	11	n	0.06	1	16	1	16	n	0.00	0	19	0	19	n	0.05	1	21	1	21	n	0.17	6	29	6	29	y	ENSMUSG00000026199.18	Ankzf1	chr1	protein_coding	ankyrin repeat and zinc finger domain containing 1
novel_NIR_1103	chr1	75185481	75185581	-	75185481	75185700	A5SS	ENSMUST00000155716.8	novel	0.00	0	2	0	2	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.12	1	7	1	7	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	ENSMUSG00000026200.14	Glb1l	chr1	protein_coding	galactosidase, beta 1-like
novel_NIR_1104	chr1	75189377	75189485	+	75189377	75189698	A3SS	ENSMUST00000142052.8	novel	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000026201.13	Stk16	chr1	protein_coding	serine/threonine kinase 16
novel_NIR_1105	chr1	75193590	75193856	-	75193237	75193856	A3SS	ENSMUST00000188593.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000026202.14	Tuba4a	chr1	protein_coding	tubulin, alpha 4A
novel_NIR_1106	chr1	75194078	75195069	-	75194078	75195180	A5SS	ENSMUST00000079464.13	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000026202.14	Tuba4a	chr1	protein_coding	tubulin, alpha 4A
novel_NIR_1107	chr1	75194078	75195069	-	75194078	75195434	A5SS	ENSMUST00000190717.7	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.33	1	2	1	2	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000026202.14	Tuba4a	chr1	protein_coding	tubulin, alpha 4A
novel_NIR_1108	chr1	75194078	75195069	-	75194078	75195473	A5SS	ENSMUST00000189131.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000026202.14	Tuba4a	chr1	protein_coding	tubulin, alpha 4A
novel_NIR_1109	chr1	75194078	75195069	-	75194078	75196070	A5SS	ENSMUST00000186758.7	novel	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.33	1	2	1	2	n	0.33	1	2	1	2	n	1.00	1	0	1	0	n	ENSMUSG00000026202.14	Tuba4a	chr1	protein_coding	tubulin, alpha 4A
novel_NIR_1110	chr1	75194078	75195718	-	75194078	75195180	5pMXE	ENSMUST00000079464.13	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000026202.14	Tuba4a	chr1	protein_coding	tubulin, alpha 4A
novel_NIR_1111	chr1	75194078	75195718	-	75194078	75195434	5pMXE	ENSMUST00000190717.7	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000026202.14	Tuba4a	chr1	protein_coding	tubulin, alpha 4A
novel_NIR_1112	chr1	75194078	75195718	-	75194078	75195473	5pMXE	ENSMUST00000189131.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000026202.14	Tuba4a	chr1	protein_coding	tubulin, alpha 4A
novel_NIR_1113	chr1	75194078	75195718	-	75194078	75196070	A5SS	ENSMUST00000186758.7	novel	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.33	1	2	1	2	n	1.00	1	0	1	0	n	ENSMUSG00000026202.14	Tuba4a	chr1	protein_coding	tubulin, alpha 4A
novel_NIR_1114	chr1	75220305	75221207	+	75220305	75221079	A3SS	ENSMUST00000190445.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000026203.17	Dnajb2	chr1	protein_coding	DnaJ heat shock protein family (Hsp40) member B2
novel_NIR_1115	chr1	75221234	75221286	+	75221234	75221438	A3SS	ENSMUST00000190445.2	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.71	5	2	5	2	y	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	-	-	-	-	-	-	ENSMUSG00000026203.17	Dnajb2	chr1	protein_coding	DnaJ heat shock protein family (Hsp40) member B2
novel_NIR_1116	chr1	75293447	75293870	-	75293447	75293726	A5SS	ENSMUST00000187075.7	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.50	3	3	3	3	y	0.14	1	6	1	6	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.80	4	1	4	1	y	0.00	0	3	0	3	n	0.33	3	6	3	6	y	0.50	2	2	2	2	y	0.00	0	13	0	13	n	ENSMUSG00000026209.16	Dnpep	chr1	protein_coding	aspartyl aminopeptidase
novel_NIR_1117	chr1	75293447	75293870	-	75293447	75293789	A5SS	ENSMUST00000189282.3	novel	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.30	3	7	3	7	y	0.20	1	4	1	4	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.57	4	3	4	3	y	0.00	0	5	0	5	n	0.27	3	8	3	8	y	0.40	2	3	2	3	y	0.00	0	2	0	2	n	ENSMUSG00000026209.16	Dnpep	chr1	protein_coding	aspartyl aminopeptidase
novel_NIR_1118	chr1	75293447	75293870	-	75293447	75293979	A5SS	ENSMUST00000066668.14	novel	0.00	0	15	0	15	n	0.00	0	16	0	16	n	0.15	3	17	3	17	y	0.04	1	24	1	24	n	0.00	0	27	0	27	n	0.00	0	9	0	9	n	0.00	0	27	0	27	n	0.19	4	17	4	17	y	0.00	0	28	0	28	n	0.09	3	29	3	29	n	0.11	2	17	2	17	n	0.00	0	21	0	21	n	ENSMUSG00000026209.16	Dnpep	chr1	protein_coding	aspartyl aminopeptidase
novel_NIR_1119	chr1	75293447	75293870	-	75293447	75294501	A5SS	ENSMUST00000188652.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000026209.16	Dnpep	chr1	protein_coding	aspartyl aminopeptidase
novel_NIR_1120	chr1	75412655	75412798	+	75412655	75412759	A3SS	ENSMUST00000133418.8	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000033021.17	Gmppa	chr1	protein_coding	GDP-mannose pyrophosphorylase A
novel_NIR_1121	chr1	75412655	75412798	+	75412655	75412790	A3SS	ENSMUST00000113584.8	novel	1.00	2	0	2	0	y	0.50	1	1	1	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000033021.17	Gmppa	chr1	protein_coding	GDP-mannose pyrophosphorylase A
novel_NIR_1122	chr1	75412655	75412798	+	75412655	75413428	A3SS	ENSMUST00000143730.8	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000033021.17	Gmppa	chr1	protein_coding	GDP-mannose pyrophosphorylase A
novel_NIR_1123	chr1	75412655	75412798	+	75412655	75413638	A3SS	ENSMUST00000144874.8	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033021.17	Gmppa	chr1	protein_coding	GDP-mannose pyrophosphorylase A
novel_NIR_1124	chr1	75412655	75413382	+	75412655	75412759	A3SS&ES	ENSMUST00000133418.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000033021.17	Gmppa	chr1	protein_coding	GDP-mannose pyrophosphorylase A
novel_NIR_1125	chr1	75412655	75413382	+	75412655	75412790	A3SS&ES	ENSMUST00000113584.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000033021.17	Gmppa	chr1	protein_coding	GDP-mannose pyrophosphorylase A
novel_NIR_1126	chr1	75412655	75413382	+	75412655	75413428	A3SS	ENSMUST00000143730.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.33	1	2	1	2	n	0.40	2	3	2	3	y	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000033021.17	Gmppa	chr1	protein_coding	GDP-mannose pyrophosphorylase A
novel_NIR_1127	chr1	75412655	75413382	+	75412655	75413638	A3SS	ENSMUST00000144874.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033021.17	Gmppa	chr1	protein_coding	GDP-mannose pyrophosphorylase A
novel_NIR_1128	chr1	75412956	75413382	+	75412956	75413428	A3SS	ENSMUST00000133418.8	novel	0.30	3	7	3	7	y	0.38	3	5	3	5	y	0.14	2	12	2	12	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.17	2	10	2	10	y	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.29	2	5	2	5	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000033021.17	Gmppa	chr1	protein_coding	GDP-mannose pyrophosphorylase A
novel_NIR_1129	chr1	75412963	75413422	+	75412837	75413422	A5SS	ENSMUST00000131545.8	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.40	2	3	2	3	y	ENSMUSG00000033021.17	Gmppa	chr1	protein_coding	GDP-mannose pyrophosphorylase A
novel_NIR_1130	chr1	75506260	75506647	+	75506260	75506578	A3SS	ENSMUST00000027414.16	novel	0.00	0	11	0	11	n	0.00	0	1	0	1	n	0.00	0	16	0	16	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.20	2	8	2	8	y	0.00	0	3	0	3	n	0.30	3	7	3	7	y	0.00	0	9	0	9	n	ENSMUSG00000026213.16	Stk11ip	chr1	protein_coding	serine/threonine kinase 11 interacting protein
novel_NIR_1131	chr1	79586919	79590618	-	79586919	79591920	A5SS	ENSMUST00000162342.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000054702.15	Ap1s3	chr1	protein_coding	adaptor-related protein complex AP-1, sigma 3
novel_NIR_1132	chr1	79694919	79702362	-	79692717	79702362	A3SS	ENSMUST00000113512.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000073643.12	Wdfy1	chr1	protein_coding	WD repeat and FYVE domain containing 1
novel_NIR_1133	chr1	79695032	79702475	-	79695032	79696841	A5SS&ES	ENSMUST00000113513.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.75	3	1	3	1	y	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000073643.12	Wdfy1	chr1	protein_coding	WD repeat and FYVE domain containing 1
novel_NIR_1134	chr1	79695032	79702475	-	79695032	79704283	A5SS	ENSMUST00000113514.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000073643.12	Wdfy1	chr1	protein_coding	WD repeat and FYVE domain containing 1
novel_NIR_1135	chr1	79699985	79702362	-	79692717	79702362	A3SS	ENSMUST00000113512.8	novel	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	7	0	7	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	5	0	5	0	y	1.00	4	0	4	0	y	ENSMUSG00000073643.12	Wdfy1	chr1	protein_coding	WD repeat and FYVE domain containing 1
novel_NIR_1136	chr1	79699985	79702362	-	79699985	79711517	A5SS	ENSMUST00000113513.8	novel	0.80	4	1	4	1	y	0.75	3	1	3	1	y	0.70	7	3	7	3	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.67	4	2	4	2	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.75	3	1	3	1	y	1.00	5	0	5	0	y	1.00	4	0	4	0	y	ENSMUSG00000073643.12	Wdfy1	chr1	protein_coding	WD repeat and FYVE domain containing 1
novel_NIR_1137	chr1	80247072	80254131	-	80245004	80254131	A3SS	ENSMUST00000168372.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000004364.15	Cul3	chr1	protein_coding	cullin 3
novel_NIR_1138	chr1	80281910	80286234	-	80281910	80300704	A5SS	ENSMUST00000170897.8	novel	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.11	1	8	1	8	n	0.50	2	2	2	2	y	0.00	0	6	0	6	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.38	3	5	3	5	y	0.00	0	4	0	4	n	0.22	2	7	2	7	y	ENSMUSG00000004364.15	Cul3	chr1	protein_coding	cullin 3
novel_NIR_1139	chr1	80281910	80286234	-	80281910	80317963	A5SS	ENSMUST00000164108.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000004364.15	Cul3	chr1	protein_coding	cullin 3
novel_NIR_1140	chr1	80299653	80300576	-	80299647	80300576	A3SS	ENSMUST00000167293.2	novel	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000004364.15	Cul3	chr1	protein_coding	cullin 3
novel_NIR_1141	chr1	82215325	82262260	-	82215325	82264498	A5SS	ENSMUST00000069799.3	novel	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.05	1	18	1	18	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.27	3	8	3	8	y	0.00	0	12	0	12	n	ENSMUSG00000055980.3	Irs1	chr1	protein_coding	insulin receptor substrate 1
novel_NIR_1142	chr1	82670143	82673355	-	82670139	82673355	A3SS	ENSMUST00000181720.2	novel	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.12	1	7	1	7	n	0.33	2	4	2	4	y	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.12	1	7	1	7	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	ENSMUSG00000097564.3	C430014B12Rik	chr1	lncRNA	RIKEN cDNA C430014B12 gene
novel_NIR_1143	chr1	82676063	82702613	-	82676063	82702508	A5SS	ENSMUST00000181720.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.50	3	3	3	3	y	0.23	3	10	3	10	y	0.00	0	4	0	4	n	0.13	2	13	2	13	n	ENSMUSG00000097564.3	C430014B12Rik	chr1	lncRNA	RIKEN cDNA C430014B12 gene
novel_NIR_1144	chr1	82697905	82702613	-	82697905	82702508	A5SS	ENSMUST00000186858.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	ENSMUSG00000097564.3	C430014B12Rik	chr1	lncRNA	RIKEN cDNA C430014B12 gene
novel_NIR_1145	chr1	82713228	82719656	+	82713228	82714734	A3SS&ES	ENSMUST00000161648.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000026150.15	Mff	chr1	protein_coding	mitochondrial fission factor
novel_NIR_1146	chr1	82713228	82719656	+	82713228	82723245	A3SS	ENSMUST00000160750.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000026150.15	Mff	chr1	protein_coding	mitochondrial fission factor
novel_NIR_1147	chr1	82861082	82863835	+	82861082	82863832	A3SS	ENSMUST00000189220.7	novel	0.21	7	27	7	27	y	0.25	5	15	5	15	y	0.18	14	63	14	63	y	0.21	7	27	7	27	y	0.22	14	49	14	49	y	0.26	11	31	11	31	y	0.13	5	33	5	33	n	0.12	3	23	3	23	n	0.18	5	23	5	23	y	0.26	9	25	9	25	y	0.24	6	19	6	19	y	0.15	5	29	5	29	y	ENSMUSG00000026159.14	Agfg1	chr1	protein_coding	ArfGAP with FG repeats 1
novel_NIR_1148	chr1	83983351	84136953	-	84093751	84136953	3pMXE	ENSMUST00000176822.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045658.17	Pid1	chr1	protein_coding	phosphotyrosine interaction domain containing 1
novel_NIR_1149	chr1	84016228	84058366	-	84016228	84030795	5pMXE	ENSMUST00000175948.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045658.17	Pid1	chr1	protein_coding	phosphotyrosine interaction domain containing 1
novel_NIR_1150	chr1	84016228	84058454	-	84016228	84030795	5pMXE	ENSMUST00000175948.2	novel	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	7	0	7	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	ENSMUSG00000045658.17	Pid1	chr1	protein_coding	phosphotyrosine interaction domain containing 1
novel_NIR_1151	chr1	84016228	84262062	-	84016228	84030795	5pMXE	ENSMUST00000175948.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	11	0	11	0	y	1.00	1	0	1	0	n	1.00	9	0	9	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000045658.17	Pid1	chr1	protein_coding	phosphotyrosine interaction domain containing 1
novel_NIR_1152	chr1	84137099	84153155	-	84137099	84169061	A5SS	ENSMUST00000176822.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	3	3	3	3	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	ENSMUSG00000045658.17	Pid1	chr1	protein_coding	phosphotyrosine interaction domain containing 1
novel_NIR_1153	chr1	84137099	84153155	-	84137099	84313755	A5SS	ENSMUST00000176559.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000045658.17	Pid1	chr1	protein_coding	phosphotyrosine interaction domain containing 1
novel_NIR_1154	chr1	84137099	84153155	-	84137099	84341751	A5SS	ENSMUST00000175996.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000045658.17	Pid1	chr1	protein_coding	phosphotyrosine interaction domain containing 1
novel_NIR_1155	chr1	84137099	84260483	-	84137099	84169061	A5SS&ES	ENSMUST00000176822.2	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.25	1	3	1	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000045658.17	Pid1	chr1	protein_coding	phosphotyrosine interaction domain containing 1
novel_NIR_1156	chr1	84137099	84260483	-	84137099	84313755	A5SS	ENSMUST00000176559.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045658.17	Pid1	chr1	protein_coding	phosphotyrosine interaction domain containing 1
novel_NIR_1157	chr1	84137099	84260483	-	84137099	84341751	A5SS	ENSMUST00000175996.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045658.17	Pid1	chr1	protein_coding	phosphotyrosine interaction domain containing 1
novel_NIR_1158	chr1	84137099	84260536	-	84137099	84169061	A5SS&ES	ENSMUST00000176822.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.25	1	3	1	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.75	3	1	3	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000045658.17	Pid1	chr1	protein_coding	phosphotyrosine interaction domain containing 1
novel_NIR_1159	chr1	84137099	84260536	-	84137099	84313755	A5SS	ENSMUST00000176559.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045658.17	Pid1	chr1	protein_coding	phosphotyrosine interaction domain containing 1
novel_NIR_1160	chr1	84137099	84260536	-	84137099	84341751	A5SS	ENSMUST00000175996.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045658.17	Pid1	chr1	protein_coding	phosphotyrosine interaction domain containing 1
novel_NIR_1161	chr1	84137099	84260670	-	84137099	84169061	A5SS&ES	ENSMUST00000176822.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000045658.17	Pid1	chr1	protein_coding	phosphotyrosine interaction domain containing 1
novel_NIR_1162	chr1	84137099	84260670	-	84137099	84313755	A5SS	ENSMUST00000176559.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045658.17	Pid1	chr1	protein_coding	phosphotyrosine interaction domain containing 1
novel_NIR_1163	chr1	84137099	84260670	-	84137099	84341751	A5SS	ENSMUST00000175996.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045658.17	Pid1	chr1	protein_coding	phosphotyrosine interaction domain containing 1
novel_NIR_1164	chr1	84137099	84261996	-	84137099	84169061	A5SS&ES	ENSMUST00000176822.2	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000045658.17	Pid1	chr1	protein_coding	phosphotyrosine interaction domain containing 1
novel_NIR_1165	chr1	84137099	84261996	-	84137099	84313755	A5SS	ENSMUST00000176559.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045658.17	Pid1	chr1	protein_coding	phosphotyrosine interaction domain containing 1
novel_NIR_1166	chr1	84137099	84261996	-	84137099	84341751	A5SS	ENSMUST00000175996.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045658.17	Pid1	chr1	protein_coding	phosphotyrosine interaction domain containing 1
novel_NIR_1167	chr1	84722472	84722725	-	84722472	84722734	A5SS	ENSMUST00000027421.13	novel	0.06	6	98	6	98	n	0.05	3	56	3	56	n	0.04	7	151	7	151	n	0.07	9	122	9	122	n	0.05	8	156	8	156	n	0.06	6	101	6	101	n	0.11	16	130	16	130	n	0.08	8	90	8	90	n	0.00	0	108	0	108	n	0.01	1	129	1	129	n	0.16	13	70	13	70	y	0.08	11	130	11	130	n	ENSMUSG00000026219.15	Trip12	chr1	protein_coding	thyroid hormone receptor interactor 12
novel_NIR_1168	chr1	84736848	84738481	-	84736848	84738484	A5SS	ENSMUST00000027421.13	novel	0.21	7	26	7	26	y	0.27	4	11	4	11	y	0.19	14	59	14	59	y	0.13	6	39	6	39	n	0.18	14	63	14	63	y	0.18	7	31	7	31	y	0.16	7	38	7	38	y	0.21	8	30	8	30	y	0.15	6	35	6	35	y	0.20	10	40	10	40	y	0.18	6	28	6	28	y	0.06	2	32	2	32	n	ENSMUSG00000026219.15	Trip12	chr1	protein_coding	thyroid hormone receptor interactor 12
novel_NIR_1169	chr1	84763917	84792544	-	84773536	84792544	A3SS&ES	ENSMUST00000185909.7	novel	0.00	0	6	0	6	n	1.00	1	0	1	0	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	17	0	17	n	0.20	2	8	2	8	y	0.08	1	11	1	11	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	ENSMUSG00000026219.15	Trip12	chr1	protein_coding	thyroid hormone receptor interactor 12
novel_NIR_1170	chr1	84792690	84792896	-	84792690	84816332	A5SS	ENSMUST00000187818.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000026219.15	Trip12	chr1	protein_coding	thyroid hormone receptor interactor 12
novel_NIR_1171	chr1	84792690	84792896	-	84792690	84816950	A5SS	ENSMUST00000027421.13	novel	0.10	2	18	2	18	n	0.00	0	1	0	1	n	0.03	1	38	1	38	n	0.00	0	16	0	16	n	0.00	0	27	0	27	n	0.17	3	15	3	15	y	0.00	0	26	0	26	n	0.00	0	17	0	17	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	25	0	25	n	ENSMUSG00000026219.15	Trip12	chr1	protein_coding	thyroid hormone receptor interactor 12
novel_NIR_1172	chr1	84792690	84792896	-	84792690	84817955	A5SS	ENSMUST00000190067.7	novel	0.33	2	4	2	4	y	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.60	3	2	3	2	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000026219.15	Trip12	chr1	protein_coding	thyroid hormone receptor interactor 12
novel_NIR_1173	chr1	84792690	84792896	-	84792690	84818204	A5SS	ENSMUST00000186465.7	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026219.15	Trip12	chr1	protein_coding	thyroid hormone receptor interactor 12
novel_NIR_1174	chr1	84792690	84809558	-	84792690	84816332	A5SS	ENSMUST00000187818.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000026219.15	Trip12	chr1	protein_coding	thyroid hormone receptor interactor 12
novel_NIR_1175	chr1	84792690	84809558	-	84792690	84817955	A5SS	ENSMUST00000190067.7	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.25	2	6	2	6	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000026219.15	Trip12	chr1	protein_coding	thyroid hormone receptor interactor 12
novel_NIR_1176	chr1	84792690	84809558	-	84792690	84818204	A5SS	ENSMUST00000186465.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026219.15	Trip12	chr1	protein_coding	thyroid hormone receptor interactor 12
novel_NIR_1177	chr1	84792690	84811046	-	84792690	84816332	A5SS	ENSMUST00000187818.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000026219.15	Trip12	chr1	protein_coding	thyroid hormone receptor interactor 12
novel_NIR_1178	chr1	84792690	84811046	-	84792690	84817955	A5SS	ENSMUST00000190067.7	novel	0.20	1	4	1	4	n	-	-	-	-	-	-	0.80	4	1	4	1	y	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.33	1	2	1	2	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000026219.15	Trip12	chr1	protein_coding	thyroid hormone receptor interactor 12
novel_NIR_1179	chr1	84792690	84811046	-	84792690	84818204	A5SS	ENSMUST00000186465.7	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026219.15	Trip12	chr1	protein_coding	thyroid hormone receptor interactor 12
novel_NIR_1180	chr1	84811143	84816950	-	84792690	84816950	A3SS	ENSMUST00000027421.13	novel	0.00	0	18	0	18	n	0.00	0	1	0	1	n	0.03	1	38	1	38	n	0.00	0	16	0	16	n	0.04	1	27	1	27	n	0.00	0	15	0	15	n	0.00	0	26	0	26	n	0.00	0	17	0	17	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.27	4	11	4	11	y	0.04	1	25	1	25	n	ENSMUSG00000026219.15	Trip12	chr1	protein_coding	thyroid hormone receptor interactor 12
novel_NIR_1181	chr1	85146976	85549375	+	85146976	85148840	3pMXE	ENSMUST00000160802.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000089716.8	Gm6264	chr1	transcribed_unprocessed_pseudogene	predicted gene 6264
novel_NIR_1182	chr1	85512776	85513936	-	85512773	85513936	A3SS	ENSMUST00000093508.7	novel	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000070034.14	Sp110	chr1	protein_coding	Sp110 nuclear body protein
novel_NIR_1183	chr1	85632779	85634561	+	85632779	85634558	A3SS	ENSMUST00000132641.8	novel	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.29	2	5	2	5	y	0.00	0	2	0	2	n	0.12	1	7	1	7	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.67	2	1	2	1	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	ENSMUSG00000026222.17	Sp100	chr1	protein_coding	nuclear antigen Sp100
novel_NIR_1184	chr1	85634675	85635703	+	85634675;85635019	85634948;85635703	ES	ENSMUST00000132641.8	novel	0.21	2	7.5	2	8;7	y	0.17	1	5.0	1	5;5	n	0.00	0	8.5	0	6;11	n	0.00	0	4.5	0	2;7	n	0.00	0	5.0	0	3;7	n	0.00	0	6.5	0	5;8	n	0.00	0	7.0	0	3;11	n	0.00	0	3.0	0	3;3	n	0.00	0	9.5	0	11;8	n	0.00	0	5.0	0	7;3	n	0.00	0	6.0	0	5;7	n	0.00	0	3.0	0	2;4	n	ENSMUSG00000026222.17	Sp100	chr1	protein_coding	nuclear antigen Sp100
novel_NIR_1185	chr1	85634675	85635703	+	85635019	85635703	A5SS&ES	ENSMUST00000066427.11	novel	0.22	2	7	2	7	y	0.17	1	5	1	5	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	ENSMUSG00000026222.17	Sp100	chr1	protein_coding	nuclear antigen Sp100
novel_NIR_1186	chr1	85721542	85723078	+	85721542	85741433	A3SS	ENSMUST00000126962.3	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036707.17	Cab39	chr1	protein_coding	calcium binding protein 39
novel_NIR_1187	chr1	85721542	85723078	+	85722270	85723078	5pMXE	ENSMUST00000097666.4	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036707.17	Cab39	chr1	protein_coding	calcium binding protein 39
novel_NIR_1188	chr1	85721542	85723082	+	85721542	85741433	A3SS	ENSMUST00000126962.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000036707.17	Cab39	chr1	protein_coding	calcium binding protein 39
novel_NIR_1189	chr1	85721962	85723078	+	85722270	85723078	5pMXE	ENSMUST00000097666.4	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036707.17	Cab39	chr1	protein_coding	calcium binding protein 39
novel_NIR_1190	chr1	85732014	85746078	+	85722270	85746078	A5SS	ENSMUST00000130754.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	5	0	5	0	y	ENSMUSG00000036707.17	Cab39	chr1	protein_coding	calcium binding protein 39
novel_NIR_1191	chr1	85732014	85746078	+	85723194	85746078	A5SS	ENSMUST00000097666.4	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.17	1	5	1	5	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.25	1	3	1	3	n	0.83	5	1	5	1	y	ENSMUSG00000036707.17	Cab39	chr1	protein_coding	calcium binding protein 39
novel_NIR_1192	chr1	85732014	85746078	+	85743830	85746078	A5SS&ES	ENSMUST00000126962.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	5	0	5	0	y	ENSMUSG00000036707.17	Cab39	chr1	protein_coding	calcium binding protein 39
novel_NIR_1193	chr1	85992907	85998305	+	85992728	85998305	A5SS	ENSMUST00000127104.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.20	1	4	1	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000026229.18	Psmd1	chr1	protein_coding	proteasome (prosome, macropain) 26S subunit, non-ATPase, 1
novel_NIR_1194	chr1	86064838	86069813	+	86064838	86082433	A3SS	ENSMUST00000135197.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000094638.2	Gm21972	chr1	protein_coding	predicted gene 21972
novel_NIR_1195	chr1	86104026	86104536	+	86101436	86104536	A5SS	ENSMUST00000123618.8	novel	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.20	2	8	2	8	y	ENSMUSG00000062590.14	Armc9	chr1	protein_coding	armadillo repeat containing 9
novel_NIR_1196	chr1	86454672	86456904	+	86454672	86455571	A3SS&ES	ENSMUST00000188699.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026238.15	Ptma	chr1	protein_coding	prothymosin alpha
novel_NIR_1197	chr1	86454672	86456904	+	86454672	86456497	A3SS&ES	ENSMUST00000186932.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026238.15	Ptma	chr1	protein_coding	prothymosin alpha
novel_NIR_1198	chr1	86457268	86457453	+	86456966	86457453	A5SS	ENSMUST00000186255.7	novel	1.00	2	0	2	0	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000026238.15	Ptma	chr1	protein_coding	prothymosin alpha
novel_NIR_1199	chr1	86526924	86528805	+	86526927	86528805	A5SS	ENSMUST00000121534.8	novel	0.00	0	31	0	31	n	0.00	0	19	0	19	n	0.00	0	21	0	21	n	0.00	0	21	0	21	n	0.11	4	31	4	31	n	0.00	0	12	0	12	n	0.00	0	30	0	30	n	0.00	0	17	0	17	n	0.15	3	17	3	17	y	0.00	0	28	0	28	n	0.00	0	35	0	35	n	0.04	1	25	1	25	n	ENSMUSG00000026240.13	Cops7b	chr1	protein_coding	COP9 signalosome subunit 7B
novel_NIR_1200	chr1	86632509	86672403	+	86631593	86672403	A5SS	ENSMUST00000188121.7	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.20	2	8	2	8	y	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	17	0	17	n	ENSMUSG00000053333.16	Dis3l2	chr1	protein_coding	DIS3 like 3'-5' exoribonuclease 2
novel_NIR_1201	chr1	86688111	86694852	+	86688111	86719138	A3SS	ENSMUST00000168237.8	novel	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.40	2	3	2	3	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000053333.16	Dis3l2	chr1	protein_coding	DIS3 like 3'-5' exoribonuclease 2
novel_NIR_1202	chr1	86688111	86694852	+	86688111	86740234	A3SS	ENSMUST00000190618.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.33	2	4	2	4	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000053333.16	Dis3l2	chr1	protein_coding	DIS3 like 3'-5' exoribonuclease 2
novel_NIR_1203	chr1	86688111	86694852	+	86688111	86748944	A3SS	ENSMUST00000065694.8	novel	0.00	0	17	0	17	n	0.00	0	7	0	7	n	0.06	1	17	1	17	n	0.17	2	10	2	10	y	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.10	1	9	1	9	n	0.00	0	16	0	16	n	0.25	2	6	2	6	n	0.07	1	14	1	14	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	ENSMUSG00000053333.16	Dis3l2	chr1	protein_coding	DIS3 like 3'-5' exoribonuclease 2
novel_NIR_1204	chr1	86688111	86740210	+	86688111	86719138	A3SS&ES	ENSMUST00000168237.8	novel	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000053333.16	Dis3l2	chr1	protein_coding	DIS3 like 3'-5' exoribonuclease 2
novel_NIR_1205	chr1	86688111	86740210	+	86688111	86740234	A3SS	ENSMUST00000190618.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	4	0	4	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000053333.16	Dis3l2	chr1	protein_coding	DIS3 like 3'-5' exoribonuclease 2
novel_NIR_1206	chr1	86688111;86694958	86694852;86748944	+	86688111	86748944	cassetteExon	ENSMUST00000065694.8	novel	0.00	0.0	17	0;0	17	n	0.00	0.0	7	0;0	7	n	0.03	0.5	17	1;0	17	n	0.09	1.0	10	2;0	10	n	0.00	0.0	14	0;0	14	n	0.00	0.0	11	0;0	11	n	0.05	0.5	9	1;0	9	n	0.00	0.0	16	0;0	16	n	0.25	2.0	6	2;2	6	y	0.03	0.5	14	1;0	14	n	0.00	0.0	11	0;0	11	n	0.00	0.0	11	0;0	11	n	ENSMUSG00000053333.16	Dis3l2	chr1	protein_coding	DIS3 like 3'-5' exoribonuclease 2
novel_NIR_1207	chr1	86688111;86694958	86694852;86748944	+	86688111;86719179	86719138;86748944	MXE	ENSMUST00000168237.8	novel	0.00	0.0	4.5	0;0	7;2	n	0.00	0.0	1.0	0;0	1;1	n	0.12	0.5	3.5	1;0	2;5	n	0.67	1.0	0.5	2;0	0;1	n	0.00	0.0	2.5	0;0	2;3	n	0.00	0.0	0.5	0;0	0;1	n	0.20	0.5	2.0	1;0	1;3	n	0.00	0.0	1.5	0;0	2;1	n	0.36	2.0	3.5	2;2	3;4	y	0.25	0.5	1.5	1;0	1;2	n	-	-	-	-	-	-	0.00	0.0	0.5	0;0	0;1	n	ENSMUSG00000053333.16	Dis3l2	chr1	protein_coding	DIS3 like 3'-5' exoribonuclease 2
novel_NIR_1208	chr1	86688111;86694958	86694852;86748944	+	86688111;86740311	86719138;86748944	MXE	ENSMUST00000189044.7	novel	0.00	0.0	3.5	0;0	7;0	n	0.00	0.0	0.5	0;0	1;0	n	0.33	0.5	1.0	1;0	2;0	n	0.40	1.0	1.5	2;0	0;3	n	0.00	0.0	1.0	0;0	2;0	n	-	-	-	-	-	-	0.50	0.5	0.5	1;0	1;0	n	0.00	0.0	1.0	0;0	2;0	n	0.40	2.0	3.0	2;2	3;3	y	0.50	0.5	0.5	1;0	1;0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000053333.16	Dis3l2	chr1	protein_coding	DIS3 like 3'-5' exoribonuclease 2
novel_NIR_1209	chr1	86688111;86694958	86694852;86748944	+	86688111;86740311	86740234;86748944	MXE	ENSMUST00000190618.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	0.5	0.0	1;0	0;0	n	0.40	1.0	1.5	2;0	0;3	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	0.5	0.0	1;0	0;0	n	0.00	0.0	0.5	0;0	1;0	n	0.36	2.0	3.5	2;2	4;3	y	1.00	0.5	0.0	1;0	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000053333.16	Dis3l2	chr1	protein_coding	DIS3 like 3'-5' exoribonuclease 2
novel_NIR_1210	chr1	86948376	86948760	+	86918047	86948760	A5SS	ENSMUST00000168237.8	novel	0.08	3	35	3	35	n	0.20	3	12	3	12	y	0.09	3	30	3	30	n	0.00	0	32	0	32	n	0.04	1	25	1	25	n	0.00	0	10	0	10	n	0.13	4	27	4	27	n	0.00	0	11	0	11	n	0.00	0	17	0	17	n	0.22	10	36	10	36	y	0.14	3	19	3	19	n	0.55	12	10	12	10	y	ENSMUSG00000053333.16	Dis3l2	chr1	protein_coding	DIS3 like 3'-5' exoribonuclease 2
novel_NIR_1211	chr1	87153955	87155630	+	87153955	87160125	A3SS	ENSMUST00000113235.8	novel	0.00	0	4	0	4	n	0.33	2	4	2	4	y	0.40	2	3	2	3	y	0.71	5	2	5	2	y	0.64	7	4	7	4	y	0.25	1	3	1	3	n	0.17	1	5	1	5	n	0.20	1	4	1	4	n	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.50	3	3	3	3	y	0.57	4	3	4	3	y	ENSMUSG00000026254.18	Eif4e2	chr1	protein_coding	eukaryotic translation initiation factor 4E member 2
novel_NIR_1212	chr1	87153955	87155630	+	87153955	87160316	A3SS	ENSMUST00000050876.14	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	7	0	7	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	4	0	4	0	y	ENSMUSG00000026254.18	Eif4e2	chr1	protein_coding	eukaryotic translation initiation factor 4E member 2
novel_NIR_1213	chr1	87153955	87155630	+	87153955	87165568	A3SS	ENSMUST00000076362.12	novel	0.00	0	19	0	19	n	0.09	2	21	2	21	n	0.06	2	34	2	34	n	0.14	5	31	5	31	n	0.18	7	31	7	31	y	0.08	1	12	1	12	n	0.03	1	32	1	32	n	0.08	1	12	1	12	n	0.04	1	22	1	22	n	0.00	0	16	0	16	n	0.09	3	29	3	29	n	0.14	4	25	4	25	n	ENSMUSG00000026254.18	Eif4e2	chr1	protein_coding	eukaryotic translation initiation factor 4E member 2
novel_NIR_1214	chr1	87153955	87159694	+	87153955	87160125	A3SS	ENSMUST00000113235.8	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.40	2	3	2	3	y	ENSMUSG00000026254.18	Eif4e2	chr1	protein_coding	eukaryotic translation initiation factor 4E member 2
novel_NIR_1215	chr1	87153955	87159694	+	87153955	87160316	A3SS	ENSMUST00000050876.14	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000026254.18	Eif4e2	chr1	protein_coding	eukaryotic translation initiation factor 4E member 2
novel_NIR_1216	chr1	87153955	87170226	+	87153955	87160316	3pMXE	ENSMUST00000050876.14	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026254.18	Eif4e2	chr1	protein_coding	eukaryotic translation initiation factor 4E member 2
novel_NIR_1217	chr1	87153955	87170226	+	87153955	87165568	3pMXE	ENSMUST00000076362.12	novel	0.00	0	19	0	19	n	0.00	0	21	0	21	n	0.00	0	34	0	34	n	0.00	0	31	0	31	n	0.00	0	31	0	31	n	0.00	0	12	0	12	n	0.00	0	32	0	32	n	0.00	0	12	0	12	n	0.00	0	22	0	22	n	0.16	3	16	3	16	y	0.00	0	29	0	29	n	0.00	0	25	0	25	n	ENSMUSG00000026254.18	Eif4e2	chr1	protein_coding	eukaryotic translation initiation factor 4E member 2
novel_NIR_1218	chr1	87223036	87225351	+	87217337	87225351	A5SS	ENSMUST00000118687.8	novel	0.50	1	1	1	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000026255.16	Efhd1	chr1	protein_coding	EF hand domain containing 1
novel_NIR_1219	chr1	87254829	87261992	+	87254814	87261992	A5SS	ENSMUST00000174846.8	novel	0.00	0	17	0	17	n	0.15	2	11	2	11	y	0.16	5	26	5	26	y	0.00	0	22	0	22	n	0.00	0	33	0	33	n	0.00	0	12	0	12	n	0.10	3	28	3	28	n	0.12	2	14	2	14	n	0.00	0	15	0	15	n	0.00	0	28	0	28	n	0.38	5	8	5	8	y	0.00	0	19	0	19	n	ENSMUSG00000048000.16	Gigyf2	chr1	protein_coding	GRB10 interacting GYF protein 2
novel_NIR_1220	chr1	87307730	87316860	+	87307730	87316773	A3SS	ENSMUST00000173850.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000048000.16	Gigyf2	chr1	protein_coding	GRB10 interacting GYF protein 2
novel_NIR_1221	chr1	87307730	87316860	+	87307730	87331389	A3SS	ENSMUST00000027475.15	novel	0.00	0	10	0	10	n	0.29	2	5	2	5	y	0.06	2	33	2	33	n	0.06	1	17	1	17	n	0.24	5	16	5	16	y	0.00	0	10	0	10	n	0.06	1	17	1	17	n	0.00	0	26	0	26	n	0.22	2	7	2	7	y	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.05	1	21	1	21	n	ENSMUSG00000048000.16	Gigyf2	chr1	protein_coding	GRB10 interacting GYF protein 2
novel_NIR_1222	chr1	87317698	87331389	+	87301833	87331389	A5SS	ENSMUST00000164992.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000048000.16	Gigyf2	chr1	protein_coding	GRB10 interacting GYF protein 2
novel_NIR_1223	chr1	87317698	87331389	+	87314206	87331389	A5SS	ENSMUST00000174535.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000048000.16	Gigyf2	chr1	protein_coding	GRB10 interacting GYF protein 2
novel_NIR_1224	chr1	87317698	87331389	+	87314352	87331389	A5SS	ENSMUST00000174334.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000048000.16	Gigyf2	chr1	protein_coding	GRB10 interacting GYF protein 2
novel_NIR_1225	chr1	87426684	87430988	-	87417466	87430988	A3SS	ENSMUST00000027477.15	novel	0.00	0	22	0	22	n	0.00	0	27	0	27	n	0.00	0	4	0	4	n	0.00	0	47	0	47	n	0.03	1	37	1	37	n	0.33	2	4	2	4	y	0.00	0	31	0	31	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.00	0	52	0	52	n	0.00	0	32	0	32	n	0.00	0	38	0	38	n	ENSMUSG00000026259.15	Ngef	chr1	protein_coding	neuronal guanine nucleotide exchange factor
novel_NIR_1226	chr1	87431295	87432398	-	87431295	87436967	A5SS	ENSMUST00000027477.15	novel	0.02	1	44	1	44	n	0.03	1	30	1	30	n	0.00	0	1	0	1	n	0.04	2	53	2	53	n	0.17	6	30	6	30	y	0.22	2	7	2	7	y	0.11	4	32	4	32	n	0.00	0	8	0	8	n	0.00	0	42	0	42	n	0.02	1	54	1	54	n	0.08	4	44	4	44	n	0.02	1	55	1	55	n	ENSMUSG00000026259.15	Ngef	chr1	protein_coding	neuronal guanine nucleotide exchange factor
novel_NIR_1227	chr1	87687608	87687773	+	87683807	87687773	A5SS	ENSMUST00000144047.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000026289.16	Atg16l1	chr1	protein_coding	autophagy related 16-like 1 (S. cerevisiae)
novel_NIR_1228	chr1	87829163	87842822	+	87809661	87842822	A5SS	ENSMUST00000027517.14	novel	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	28	0	28	n	0.00	0	22	0	22	n	0.00	0	24	0	24	n	0.25	2	6	2	6	y	0.00	0	23	0	23	n	0.06	1	16	1	16	n	0.00	0	12	0	12	n	0.03	1	28	1	28	n	0.00	0	13	0	13	n	0.00	0	19	0	19	n	ENSMUSG00000070738.11	Dgkd	chr1	protein_coding	diacylglycerol kinase, delta
novel_NIR_1229	chr1	87887615	87890146	-	87887585	87890146	A3SS	ENSMUST00000189409.7	novel	0.15	5	29	5	29	y	0.00	0	36	0	36	n	0.02	1	47	1	47	n	0.05	2	40	2	40	n	0.04	3	70	3	70	n	0.00	0	22	0	22	n	0.16	8	42	8	42	y	0.13	4	27	4	27	n	0.00	0	38	0	38	n	0.04	3	70	3	70	n	0.05	2	42	2	42	n	0.04	2	43	2	43	n	ENSMUSG00000005501.15	Usp40	chr1	protein_coding	ubiquitin specific peptidase 40
novel_NIR_1230	chr1	87895320	87901799	-	87890210	87901799	A3SS	ENSMUST00000040783.11	novel	1.00	8	0	8	0	n	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	4	0	4	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	8	0	8	0	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	ENSMUSG00000005501.15	Usp40	chr1	protein_coding	ubiquitin specific peptidase 40
novel_NIR_1231	chr1	87895320	87901799	-	87895320	87903530	A5SS	ENSMUST00000189409.7	novel	0.62	8	5	8	5	y	0.00	0	3	0	3	n	0.43	6	8	6	8	y	0.50	4	4	4	4	y	1.00	4	0	4	0	y	0.33	1	2	1	2	n	0.50	2	2	2	2	y	0.33	1	2	1	2	n	0.60	3	2	3	2	y	0.62	8	5	8	5	y	0.40	2	3	2	3	y	0.44	4	5	4	5	y	ENSMUSG00000005501.15	Usp40	chr1	protein_coding	ubiquitin specific peptidase 40
novel_NIR_1232	chr1	87895320	87901799	-	87895320;87896171	87896118;87901799	ES	ENSMUST00000187758.7	novel	0.24	8	26.0	8	26;26	y	0.00	0	15.0	0	19;11	n	0.20	6	24.0	6	27;21	y	0.14	4	25.5	4	23;28	n	0.09	4	41.0	4	40;42	n	0.07	1	14.0	1	11;17	n	0.06	2	31.0	2	31;31	n	0.08	1	11.0	1	16;6	n	0.14	3	18.0	3	20;16	n	0.19	8	33.5	8	36;31	y	0.09	2	20.0	2	19;21	n	0.15	4	23.5	4	26;21	y	ENSMUSG00000005501.15	Usp40	chr1	protein_coding	ubiquitin specific peptidase 40
novel_NIR_1233	chr1	87896171	87903530	-	87895320	87903530	A3SS	ENSMUST00000189409.7	novel	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.50	2	2	2	2	y	0.33	1	2	1	2	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.29	2	5	2	5	y	ENSMUSG00000005501.15	Usp40	chr1	protein_coding	ubiquitin specific peptidase 40
novel_NIR_1234	chr1	87896171	87903530	-	87896171;87901856	87901799;87903530	ES	ENSMUST00000187758.7	novel	0.00	0	29.5	0	26;33	n	0.00	0	14.5	0	11;18	n	0.00	0	26.0	0	21;31	n	0.00	0	26.5	0	28;25	n	0.00	0	45.0	0	42;48	n	0.00	0	17.0	0	17;17	n	0.03	1	39.0	1	31;47	n	0.17	2	9.5	2	6;13	y	0.05	1	21.0	1	16;26	n	0.03	1	38.0	1	31;45	n	0.00	0	22.5	0	21;24	n	0.07	2	27.5	2	21;34	n	ENSMUSG00000005501.15	Usp40	chr1	protein_coding	ubiquitin specific peptidase 40
novel_NIR_1235	chr1	87930244	87934947	-	87930244;87932036	87931969;87934947	ES	ENSMUST00000040783.11	novel	0.00	0	15.5	0	18;13	n	0.00	0	10.0	0	10;10	n	0.00	0	14.5	0	18;11	n	0.07	1	14.0	1	17;11	n	0.05	1	19.5	1	18;21	n	0.00	0	11.5	0	14;9	n	0.05	1	19.0	1	12;26	n	0.00	0	19.5	0	15;24	n	0.00	0	16.5	0	14;19	n	0.17	5	24.5	5	27;22	y	0.06	1	15.5	1	15;16	n	0.00	0	11.5	0	6;17	n	ENSMUSG00000005501.15	Usp40	chr1	protein_coding	ubiquitin specific peptidase 40
novel_NIR_1236	chr1	87932036	87932687	-	87932036	87932682	A5SS	ENSMUST00000188332.7	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000005501.15	Usp40	chr1	protein_coding	ubiquitin specific peptidase 40
novel_NIR_1237	chr1	87932036	87932687	-	87932036	87934947	A5SS	ENSMUST00000040783.11	novel	0.19	3	13	3	13	y	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	21	0	21	n	0.00	0	9	0	9	n	0.00	0	26	0	26	n	0.00	0	24	0	24	n	0.05	1	19	1	19	n	0.00	0	22	0	22	n	0.00	0	16	0	16	n	0.00	0	17	0	17	n	ENSMUSG00000005501.15	Usp40	chr1	protein_coding	ubiquitin specific peptidase 40
novel_NIR_1238	chr1	87983386	87998729	+	87983386	87983984	A3SS&ES	ENSMUST00000173325.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	13	0	13	0	y	-	-	-	-	-	-	ENSMUSG00000090165.9	Ugt1a10	chr1	protein_coding	UDP glycosyltransferase 1 family, polypeptide A10
novel_NIR_1239	chr1	87983386	87998729	+	87983386	88142766	A3SS	ENSMUST00000138182.8	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	13	0	13	0	y	0.00	0	1	0	1	n	ENSMUSG00000090165.9	Ugt1a10	chr1	protein_coding	UDP glycosyltransferase 1 family, polypeptide A10
novel_NIR_1240	chr1	88003612	88142766	+	87983386	88142766	A5SS	ENSMUST00000138182.8	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.75	3	1	3	1	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	5	0	5	0	y	1.00	2	0	2	0	y	0.67	2	1	2	1	y	ENSMUSG00000090165.9	Ugt1a10	chr1	protein_coding	UDP glycosyltransferase 1 family, polypeptide A10
novel_NIR_1241	chr1	88003612	88142766	+	87984058	88142766	A5SS	ENSMUST00000113142.10	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.43	3	4	3	4	y	0.67	2	1	2	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.62	5	3	5	3	y	0.33	2	4	2	4	y	0.25	2	6	2	6	y	ENSMUSG00000090165.9	Ugt1a10	chr1	protein_coding	UDP glycosyltransferase 1 family, polypeptide A10
novel_NIR_1242	chr1	88003612	88142766	+	88016443	88142766	5pMXE	ENSMUST00000113139.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	ENSMUSG00000089675.2	Ugt1a8	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A8
novel_NIR_1243	chr1	88003612	88142766	+	88023025	88142766	5pMXE	ENSMUST00000150634.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	0.67	2	1	2	1	y	1.00	2	0	2	0	y	ENSMUSG00000090124.8	Ugt1a7c	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A7C
novel_NIR_1244	chr1	88003612	88142766	+	88023700	88142766	5pMXE	ENSMUST00000058237.14	novel	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.43	3	4	3	4	y	0.25	2	6	2	6	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.31	5	11	5	11	y	0.33	2	4	2	4	y	0.11	2	17	2	17	n	ENSMUSG00000090124.8	Ugt1a7c	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A7C
novel_NIR_1245	chr1	88003612	88142766	+	88094625	88142766	5pMXE	ENSMUST00000097659.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	ENSMUSG00000089943.2	Ugt1a5	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A5
novel_NIR_1246	chr1	88031076	88034663	+	88031100	88034663	A5SS	ENSMUST00000113138.8	novel	0.00	0	21	0	21	n	0.00	0	18	0	18	n	0.00	0	18	0	18	n	0.17	5	25	5	25	y	0.00	0	34	0	34	n	0.00	0	13	0	13	n	0.00	0	40	0	40	n	0.00	0	17	0	17	n	0.00	0	20	0	20	n	0.00	0	38	0	38	n	0.00	0	19	0	19	n	0.00	0	21	0	21	n	ENSMUSG00000090145.8	Ugt1a6b	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A6B
novel_NIR_1247	chr1	88031100	88034766	+	88031100	88066195	A3SS	ENSMUST00000113135.6	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000090124.8	Ugt1a7c	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A7C
novel_NIR_1248	chr1	88031100	88035367	+	88031100	88066195	A3SS	ENSMUST00000113135.6	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000090124.8	Ugt1a7c	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A7C
novel_NIR_1249	chr1	88031100	88035408	+	88031100	88034663	A3SS	ENSMUST00000113138.8	novel	0.28	8	21	8	21	y	0.05	1	18	1	18	n	0.45	15	18	15	18	y	0.29	10	25	10	25	y	0.21	9	34	9	34	y	0.32	6	13	6	13	y	0.23	12	40	12	40	y	0.26	6	17	6	17	y	0.35	11	20	11	20	y	0.22	11	38	11	38	y	0.32	9	19	9	19	y	0.28	8	21	8	21	y	ENSMUSG00000090145.8	Ugt1a6b	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A6B
novel_NIR_1250	chr1	88031100	88035408	+	88031100	88066195	A3SS	ENSMUST00000113135.6	novel	1.00	8	0	8	0	y	1.00	1	0	1	0	n	1.00	15	0	15	0	y	1.00	10	0	10	0	y	1.00	9	0	9	0	y	1.00	6	0	6	0	y	1.00	12	0	12	0	y	1.00	6	0	6	0	y	1.00	11	0	11	0	y	1.00	11	0	11	0	y	1.00	9	0	9	0	y	1.00	8	0	8	0	y	ENSMUSG00000090124.8	Ugt1a7c	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A7C
novel_NIR_1251	chr1	88031100	88035455	+	88031100	88034663	A3SS	ENSMUST00000113138.8	novel	0.19	5	21	5	21	y	0.00	0	18	0	18	n	0.00	0	18	0	18	n	0.00	0	25	0	25	n	0.00	0	34	0	34	n	0.00	0	13	0	13	n	0.00	0	40	0	40	n	0.00	0	17	0	17	n	0.05	1	20	1	20	n	0.14	6	38	6	38	n	0.00	0	19	0	19	n	0.09	2	21	2	21	n	ENSMUSG00000090145.8	Ugt1a6b	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A6B
novel_NIR_1252	chr1	88031100	88035455	+	88031100	88066195	A3SS	ENSMUST00000113135.6	novel	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000090124.8	Ugt1a7c	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A7C
novel_NIR_1253	chr1	88033987	88034663	+	88031100	88034663	A5SS	ENSMUST00000113138.8	novel	0.00	0	21	0	21	n	0.00	0	18	0	18	n	0.05	1	18	1	18	n	0.00	0	25	0	25	n	0.06	2	34	2	34	n	0.00	0	13	0	13	n	0.00	0	40	0	40	n	0.00	0	17	0	17	n	0.20	5	20	5	20	y	0.03	1	38	1	38	n	0.14	3	19	3	19	n	0.05	1	21	1	21	n	ENSMUSG00000090145.8	Ugt1a6b	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A6B
novel_NIR_1254	chr1	88037694	88066195	+	88031100	88066195	A5SS	ENSMUST00000113135.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000090124.8	Ugt1a7c	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A7C
novel_NIR_1255	chr1	88037694	88066195	+	88062657	88066195	5pMXE	ENSMUST00000113134.8	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	ENSMUSG00000054545.18	Ugt1a6a	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A6A
novel_NIR_1256	chr1	88062657	88063799	+	88062657	88066940	A3SS	ENSMUST00000140092.8	novel	0.00	0	16	0	16	n	0.00	0	14	0	14	n	0.17	3	15	3	15	y	0.10	2	19	2	19	n	0.00	0	27	0	27	n	0.00	0	11	0	11	n	0.00	0	21	0	21	n	0.00	0	11	0	11	n	0.04	1	24	1	24	n	0.00	0	26	0	26	n	0.00	0	14	0	14	n	0.12	5	38	5	38	n	ENSMUSG00000054545.18	Ugt1a6a	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A6A
novel_NIR_1257	chr1	88062657;88063870	88063799;88066195	+	88062657	88066195	cassetteExon	ENSMUST00000113134.8	novel	1.00	1.0	0	0;2	0	n	0.20	1.0	4	0;2	4	n	0.75	3.0	1	3;3	1	y	1.00	3.5	0	2;5	0	y	1.00	1.5	0	0;3	0	n	-	-	-	-	-	-	1.00	2.0	0	0;4	0	n	0.43	1.5	2	0;3	2	n	0.14	0.5	3	1;0	3	n	0.85	5.5	1	0;11	1	n	0.50	1.0	1	0;2	1	n	0.71	5.0	2	5;5	2	y	ENSMUSG00000054545.18	Ugt1a6a	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A6A
novel_NIR_1258	chr1	88063870	88066195	+	88031100	88066195	A5SS	ENSMUST00000113135.6	novel	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	5	0	5	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	11	0	11	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	ENSMUSG00000090124.8	Ugt1a7c	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A7C
novel_NIR_1259	chr1	88063870	88066195	+	88062657	88066195	A5SS	ENSMUST00000113134.8	novel	1.00	2	0	2	0	y	0.33	2	4	2	4	y	0.75	3	1	3	1	n	1.00	5	0	5	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	0.60	3	2	3	2	y	0.00	0	3	0	3	n	0.92	11	1	11	1	y	0.67	2	1	2	1	y	0.71	5	2	5	2	n	ENSMUSG00000054545.18	Ugt1a6a	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A6A
novel_NIR_1260	chr1	88065798	88066195	+	88031100	88066195	A5SS	ENSMUST00000113135.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000090124.8	Ugt1a7c	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A7C
novel_NIR_1261	chr1	88066113	88066195	+	88031100	88066195	A5SS	ENSMUST00000113135.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000090124.8	Ugt1a7c	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A7C
novel_NIR_1262	chr1	88066113	88066195	+	88062657	88066195	A5SS	ENSMUST00000113134.8	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	ENSMUSG00000054545.18	Ugt1a6a	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A6A
novel_NIR_1263	chr1	88115241	88142766	+	87983386	88142766	A5SS	ENSMUST00000138182.8	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000090165.9	Ugt1a10	chr1	protein_coding	UDP glycosyltransferase 1 family, polypeptide A10
novel_NIR_1264	chr1	88115241	88142766	+	87984058	88142766	A5SS	ENSMUST00000113142.10	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	ENSMUSG00000090165.9	Ugt1a10	chr1	protein_coding	UDP glycosyltransferase 1 family, polypeptide A10
novel_NIR_1265	chr1	88115241	88142766	+	88016443	88142766	A5SS	ENSMUST00000113139.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000089675.2	Ugt1a8	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A8
novel_NIR_1266	chr1	88115241	88142766	+	88023025	88142766	A5SS	ENSMUST00000150634.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	ENSMUSG00000090124.8	Ugt1a7c	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A7C
novel_NIR_1267	chr1	88115241	88142766	+	88023700	88142766	A5SS	ENSMUST00000058237.14	novel	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.29	2	5	2	5	y	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.06	1	17	1	17	n	ENSMUSG00000090124.8	Ugt1a7c	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A7C
novel_NIR_1268	chr1	88115241	88142766	+	88094625	88142766	A5SS	ENSMUST00000097659.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000089943.2	Ugt1a5	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A5
novel_NIR_1269	chr1	88140651	88142766	+	87983386	88142766	A5SS	ENSMUST00000138182.8	novel	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000090165.9	Ugt1a10	chr1	protein_coding	UDP glycosyltransferase 1 family, polypeptide A10
novel_NIR_1270	chr1	88140651	88142766	+	87984058	88142766	A5SS	ENSMUST00000113142.10	novel	0.00	0	3	0	3	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.33	2	4	2	4	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	ENSMUSG00000090165.9	Ugt1a10	chr1	protein_coding	UDP glycosyltransferase 1 family, polypeptide A10
novel_NIR_1271	chr1	88140651	88142766	+	88016443	88142766	A5SS	ENSMUST00000113139.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000089675.2	Ugt1a8	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A8
novel_NIR_1272	chr1	88140651	88142766	+	88023025	88142766	A5SS	ENSMUST00000150634.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	ENSMUSG00000090124.8	Ugt1a7c	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A7C
novel_NIR_1273	chr1	88140651	88142766	+	88023700	88142766	A5SS	ENSMUST00000058237.14	novel	0.00	0	8	0	8	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.06	1	17	1	17	n	ENSMUSG00000090124.8	Ugt1a7c	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A7C
novel_NIR_1274	chr1	88140651	88142766	+	88094625	88142766	A5SS	ENSMUST00000097659.5	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000089943.2	Ugt1a5	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A5
novel_NIR_1275	chr1	88180943	88182580	+	88180212	88182580	A5SS	ENSMUST00000061013.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000079429.10	Mroh2a	chr1	protein_coding	maestro heat-like repeat family member 2A
novel_NIR_1276	chr1	88180948	88182580	+	88180212	88182580	A5SS	ENSMUST00000061013.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000079429.10	Mroh2a	chr1	protein_coding	maestro heat-like repeat family member 2A
novel_NIR_1277	chr1	88180953	88182580	+	88180212	88182580	A5SS	ENSMUST00000061013.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000079429.10	Mroh2a	chr1	protein_coding	maestro heat-like repeat family member 2A
novel_NIR_1278	chr1	88195748	88195877	-	88195748	88202750	A5SS	ENSMUST00000147393.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000044783.17	Hjurp	chr1	protein_coding	Holliday junction recognition protein
novel_NIR_1279	chr1	88195748	88195877	-	88195748	88202764	A5SS	ENSMUST00000065420.12	novel	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	17	0	17	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.06	1	15	1	15	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	ENSMUSG00000044783.17	Hjurp	chr1	protein_coding	Holliday junction recognition protein
novel_NIR_1280	chr1	88201898	88202764	-	88195748	88202764	A3SS	ENSMUST00000065420.12	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.12	1	7	1	7	n	0.29	4	10	4	10	y	0.00	0	10	0	10	n	0.00	0	17	0	17	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	4	0	4	n	0.31	5	11	5	11	y	ENSMUSG00000044783.17	Hjurp	chr1	protein_coding	Holliday junction recognition protein
novel_NIR_1281	chr1	88201898	88202764	-	88200487	88202764	A3SS	ENSMUST00000054674.15	novel	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	21	0	21	n	0.05	1	20	1	20	n	0.17	4	19	4	19	n	0.00	0	16	0	16	n	0.00	0	27	0	27	n	0.00	0	28	0	28	n	0.00	0	17	0	17	n	0.00	0	29	0	29	n	0.00	0	27	0	27	n	0.25	5	15	5	15	y	ENSMUSG00000044783.17	Hjurp	chr1	protein_coding	Holliday junction recognition protein
novel_NIR_1282	chr1	89482157	89532320	+	89383314	89532320	A5SS	ENSMUST00000027521.15	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.07	1	13	1	13	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.17	1	5	1	5	n	0.25	2	6	2	6	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000055013.17	Agap1	chr1	protein_coding	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
novel_NIR_1283	chr1	89482157	89532320	+	89509375	89532320	5pMXE	ENSMUST00000074945.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.07	1	13	1	13	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000055013.17	Agap1	chr1	protein_coding	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
novel_NIR_1284	chr1	89750524	89751579	+	89717046	89751579	A5SS	ENSMUST00000212924.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000055013.17	Agap1	chr1	protein_coding	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
novel_NIR_1285	chr1	90533234	90533332	+	90533234	90537815	A3SS	ENSMUST00000186152.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034432.12	Cops8	chr1	protein_coding	COP9 signalosome subunit 8
novel_NIR_1286	chr1	90888984	90890327	-	90888984	90895230	A5SS	ENSMUST00000135819.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026304.14	Rab17	chr1	protein_coding	RAB17, member RAS oncogene family
novel_NIR_1287	chr1	90888984	90890327	-	90888984	90896952	A5SS	ENSMUST00000128226.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026304.14	Rab17	chr1	protein_coding	RAB17, member RAS oncogene family
novel_NIR_1288	chr1	90888984	90891868	-	90888984	90895230	A5SS	ENSMUST00000135819.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000026304.14	Rab17	chr1	protein_coding	RAB17, member RAS oncogene family
novel_NIR_1289	chr1	90888984	90891868	-	90888984	90896952	A5SS	ENSMUST00000128226.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000026304.14	Rab17	chr1	protein_coding	RAB17, member RAS oncogene family
novel_NIR_1290	chr1	90888984	90891910	-	90888984	90895230	A5SS	ENSMUST00000135819.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026304.14	Rab17	chr1	protein_coding	RAB17, member RAS oncogene family
novel_NIR_1291	chr1	90888984	90891910	-	90888984	90896952	A5SS	ENSMUST00000128226.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026304.14	Rab17	chr1	protein_coding	RAB17, member RAS oncogene family
novel_NIR_1292	chr1	90896386	90896952	-	90888984	90896952	A3SS	ENSMUST00000128226.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000026304.14	Rab17	chr1	protein_coding	RAB17, member RAS oncogene family
novel_NIR_1293	chr1	90985471	90996285	+	90926615	90996285	A5SS	ENSMUST00000189505.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	0.83	5	1	5	1	y	0.29	2	5	2	5	y	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000026305.16	Lrrfip1	chr1	protein_coding	leucine rich repeat (in FLII) interacting protein 1
novel_NIR_1294	chr1	90996371	91021282	+	90996371;91012727	91012668;91021282	ES	ENSMUST00000186762.7	novel	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	0.80	2	0.5	2	1;0	y	-	-	-	-	-	-	0.67	1	0.5	1	1;0	n	0.00	0	0.5	0	1;0	n	0.00	0	1.5	0	2;1	n	0.00	0	1.5	0	3;0	n	0.00	0	0.5	0	0;1	n	0.00	0	1.0	0	2;0	n	0.00	0	2.0	0	4;0	n	-	-	-	-	-	-	ENSMUSG00000026305.16	Lrrfip1	chr1	protein_coding	leucine rich repeat (in FLII) interacting protein 1
novel_NIR_1295	chr1	90996371	91021282	+	91019389	91021282	A5SS&ES	ENSMUST00000068167.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026305.16	Lrrfip1	chr1	protein_coding	leucine rich repeat (in FLII) interacting protein 1
novel_NIR_1296	chr1	91178622	91181982	+	91178575	91181982	A5SS	ENSMUST00000191533.2	novel	0.33	2	4	2	4	y	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.25	1	3	1	3	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000034343.15	Ube2f	chr1	protein_coding	ubiquitin-conjugating enzyme E2F (putative)
novel_NIR_1297	chr1	91178622	91181982	+	91181549	91181982	A5SS&ES	ENSMUST00000059743.12	novel	0.25	2	6	2	6	y	0.00	0	13	0	13	n	0.15	2	11	2	11	y	0.12	1	7	1	7	n	0.08	1	12	1	12	n	0.00	0	5	0	5	n	0.08	1	12	1	12	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	ENSMUSG00000034343.15	Ube2f	chr1	protein_coding	ubiquitin-conjugating enzyme E2F (putative)
novel_NIR_1298	chr1	91181549	91181985	+	91178159	91181985	A5SS	ENSMUST00000171165.8	novel	0.00	0	20	0	20	n	0.06	1	15	1	15	n	0.00	0	21	0	21	n	0.00	0	27	0	27	n	0.23	5	17	5	17	y	0.00	0	12	0	12	n	0.19	6	25	6	25	y	0.00	0	19	0	19	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.10	2	19	2	19	n	0.05	1	21	1	21	n	ENSMUSG00000034343.15	Ube2f	chr1	protein_coding	ubiquitin-conjugating enzyme E2F (putative)
novel_NIR_1299	chr1	91181549	91181985	+	91181549	91181937	A3SS	ENSMUST00000171112.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	2	1	2	1	y	1.00	1	0	1	0	n	ENSMUSG00000034343.15	Ube2f	chr1	protein_coding	ubiquitin-conjugating enzyme E2F (putative)
novel_NIR_1300	chr1	91181549	91181985	+	91181549	91181982	A3SS	ENSMUST00000059743.12	novel	0.00	0	6	0	6	n	0.07	1	13	1	13	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.29	5	12	5	12	y	0.00	0	5	0	5	n	0.33	6	12	6	12	y	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.33	2	4	2	4	y	0.07	1	13	1	13	n	ENSMUSG00000034343.15	Ube2f	chr1	protein_coding	ubiquitin-conjugating enzyme E2F (putative)
novel_NIR_1301	chr1	91226170	91226787	+	91226170	91227126	A3SS	ENSMUST00000142488.8	novel	0.14	1	6	1	6	n	0.29	2	5	2	5	n	0.62	5	3	5	3	n	0.60	3	2	3	2	y	0.30	3	7	3	7	y	0.43	3	4	3	4	y	0.26	5	14	5	14	y	0.14	1	6	1	6	n	1.00	3	0	3	0	y	0.30	6	14	6	14	y	0.31	4	9	4	9	y	0.38	3	5	3	5	y	ENSMUSG00000026307.13	Scly	chr1	protein_coding	selenocysteine lyase
novel_NIR_1302	chr1	91226170	91226787	+	91226170	91228233	A3SS	ENSMUST00000147523.8	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	5	0	5	0	y	0.50	3	3	3	3	y	0.60	3	2	3	2	y	0.75	3	1	3	1	y	0.83	5	1	5	1	y	1.00	1	0	1	0	n	0.75	3	1	3	1	y	1.00	6	0	6	0	y	1.00	4	0	4	0	y	1.00	3	0	3	0	y	ENSMUSG00000026307.13	Scly	chr1	protein_coding	selenocysteine lyase
novel_NIR_1303	chr1	91226170	91228254	+	91226170	91227126	A3SS&ES	ENSMUST00000142488.8	novel	0.00	0	6	0	6	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.45	5	6	5	6	y	-	-	-	-	-	-	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	ENSMUSG00000026307.13	Scly	chr1	protein_coding	selenocysteine lyase
novel_NIR_1304	chr1	91226170	91228254	+	91226170	91228233	A3SS	ENSMUST00000147523.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	5	0	5	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026307.13	Scly	chr1	protein_coding	selenocysteine lyase
novel_NIR_1305	chr1	91226222	91227126	+	91226170	91227126	A5SS	ENSMUST00000142488.8	novel	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.50	3	3	3	3	y	0.60	3	2	3	2	y	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.12	2	14	2	14	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	ENSMUSG00000026307.13	Scly	chr1	protein_coding	selenocysteine lyase
novel_NIR_1306	chr1	91226222	91227126	+	91226222	91228250	A3SS	ENSMUST00000142802.2	novel	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.27	3	8	3	8	y	0.19	3	13	3	13	y	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.18	2	9	2	9	y	0.00	0	8	0	8	n	0.00	0	14	0	14	n	ENSMUSG00000026307.13	Scly	chr1	protein_coding	selenocysteine lyase
novel_NIR_1307	chr1	91226222	91228254	+	91226222	91228250	A3SS	ENSMUST00000142802.2	novel	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.09	1	10	1	10	n	0.10	1	9	1	9	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.18	2	9	2	9	y	0.00	0	8	0	8	n	0.00	0	14	0	14	n	ENSMUSG00000026307.13	Scly	chr1	protein_coding	selenocysteine lyase
novel_NIR_1308	chr1	91227191	91228254	+	91227191	91228250	A3SS	ENSMUST00000142488.8	novel	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	17	0	17	n	0.00	0	17	0	17	n	0.23	3	10	3	10	y	0.00	0	20	0	20	n	0.00	0	11	0	11	n	0.00	0	23	0	23	n	ENSMUSG00000026307.13	Scly	chr1	protein_coding	selenocysteine lyase
novel_NIR_1309	chr1	91228362	91230004	+	91228362	91230495	A3SS	ENSMUST00000154045.8	novel	0.17	1	5	1	5	n	0.07	1	14	1	14	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.08	1	12	1	12	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.12	1	7	1	7	n	0.50	1	1	1	1	n	0.20	2	8	2	8	y	0.07	1	13	1	13	n	ENSMUSG00000026307.13	Scly	chr1	protein_coding	selenocysteine lyase
novel_NIR_1310	chr1	91233176	91233635	+	91233176	91236015	A3SS	ENSMUST00000124832.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026307.13	Scly	chr1	protein_coding	selenocysteine lyase
novel_NIR_1311	chr1	91233176	91236054	+	91233176	91236015	A3SS	ENSMUST00000124832.8	novel	-	-	-	-	-	-	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026307.13	Scly	chr1	protein_coding	selenocysteine lyase
novel_NIR_1312	chr1	91313068	91318329	-	91304121	91318329	A3SS	ENSMUST00000187306.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000026309.15	Ilkap	chr1	protein_coding	integrin-linked kinase-associated serine/threonine phosphatase 2C
novel_NIR_1313	chr1	91315063	91316073	-	91315063	91316077	A5SS	ENSMUST00000187049.7	novel	0.33	4	8	4	8	y	0.00	0	7	0	7	n	0.08	1	12	1	12	n	0.09	1	10	1	10	n	0.11	2	16	2	16	n	0.17	1	5	1	5	n	0.08	1	12	1	12	n	0.18	2	9	2	9	y	0.00	0	7	0	7	n	0.23	3	10	3	10	y	0.12	2	14	2	14	n	0.09	1	10	1	10	n	ENSMUSG00000026309.15	Ilkap	chr1	protein_coding	integrin-linked kinase-associated serine/threonine phosphatase 2C
novel_NIR_1314	chr1	91318385	91326373	-	91318385;91318919	91318854;91326373	ES	ENSMUST00000187049.7	novel	0.10	6	54.0	6	58;50	n	0.00	0	57.0	0	59;55	n	0.00	0	60.0	0	64;56	n	0.04	2	46.5	2	47;46	n	0.03	2	71.5	2	65;78	n	0.16	7	37.5	7	36;39	y	0.00	0	65.5	0	77;54	n	0.00	0	31.0	0	31;31	n	0.02	1	39.5	1	40;39	n	0.11	8	66.0	8	71;61	n	0.00	0	56.0	0	56;56	n	0.01	1	69.0	1	67;71	n	ENSMUSG00000026309.15	Ilkap	chr1	protein_coding	integrin-linked kinase-associated serine/threonine phosphatase 2C
novel_NIR_1315	chr1	91318385	91326373	-	91318919	91326373	A3SS&ES	ENSMUST00000187678.7	novel	0.11	6	50	6	50	n	0.00	0	55	0	55	n	0.00	0	56	0	56	n	0.04	2	46	2	46	n	0.03	2	78	2	78	n	0.15	7	39	7	39	y	0.00	0	54	0	54	n	0.00	0	31	0	31	n	0.03	1	39	1	39	n	0.12	8	61	8	61	n	0.00	0	56	0	56	n	0.01	1	71	1	71	n	ENSMUSG00000026309.15	Ilkap	chr1	protein_coding	integrin-linked kinase-associated serine/threonine phosphatase 2C
novel_NIR_1316	chr1	91318753	91318854	-	91309616	91318854	A3SS	ENSMUST00000187678.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000026309.15	Ilkap	chr1	protein_coding	integrin-linked kinase-associated serine/threonine phosphatase 2C
novel_NIR_1317	chr1	91348316	91349090	-	91348320	91349090	A3SS	ENSMUST00000069620.10	novel	0.26	12	35	12	35	y	0.00	0	36	0	36	n	0.10	2	19	2	19	n	0.08	3	34	3	34	n	0.09	3	31	3	31	n	0.00	0	2	0	2	n	0.00	0	22	0	22	n	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.00	0	34	0	34	n	0.11	4	32	4	32	n	0.00	0	16	0	16	n	ENSMUSG00000055866.10	Per2	chr1	protein_coding	period circadian clock 2
novel_NIR_1318	chr1	91363049	91363372	-	91362892	91363372	A3SS	ENSMUST00000069620.10	novel	0.03	1	32	1	32	n	0.07	1	13	1	13	n	0.22	2	7	2	7	y	0.11	3	24	3	24	n	0.06	1	15	1	15	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.11	1	8	1	8	n	0.44	4	5	4	5	y	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	5	0	5	n	ENSMUSG00000055866.10	Per2	chr1	protein_coding	period circadian clock 2
novel_NIR_1319	chr1	91368605	91369081	-	91368605	91372307	A5SS	ENSMUST00000069620.10	novel	0.00	0	17	0	17	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	19	0	19	n	0.16	3	16	3	16	y	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	ENSMUSG00000055866.10	Per2	chr1	protein_coding	period circadian clock 2
novel_NIR_1320	chr1	91373344	91373535	-	91373344	91376430	A5SS	ENSMUST00000069620.10	novel	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	21	0	21	n	0.25	2	6	2	6	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	ENSMUSG00000055866.10	Per2	chr1	protein_coding	period circadian clock 2
novel_NIR_1321	chr1	91373344	91373592	-	91373344	91376430	A5SS	ENSMUST00000069620.10	novel	0.07	1	14	1	14	n	0.00	0	12	0	12	n	0.50	7	7	7	7	y	0.00	0	21	0	21	n	0.14	1	6	1	6	n	0.50	3	3	3	3	y	0.14	1	6	1	6	n	0.71	5	2	5	2	y	0.43	3	4	3	4	y	0.25	4	12	4	12	y	0.00	0	8	0	8	n	0.12	2	14	2	14	n	ENSMUSG00000055866.10	Per2	chr1	protein_coding	period circadian clock 2
novel_NIR_1322	chr1	91373344	91373620	-	91373344	91376430	A5SS	ENSMUST00000069620.10	novel	0.07	1	14	1	14	n	0.08	1	12	1	12	n	0.00	0	7	0	7	n	0.00	0	21	0	21	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.14	1	6	1	6	n	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	ENSMUSG00000055866.10	Per2	chr1	protein_coding	period circadian clock 2
novel_NIR_1323	chr1	91376267	91376430	-	91373344	91376430	A3SS	ENSMUST00000069620.10	novel	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.09	2	21	2	21	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.45	5	6	5	6	y	0.00	0	2	0	2	n	0.43	3	4	3	4	y	0.00	0	12	0	12	n	0.11	1	8	1	8	n	0.00	0	14	0	14	n	ENSMUSG00000055866.10	Per2	chr1	protein_coding	period circadian clock 2
novel_NIR_1324	chr1	91376267	91376430	-	91375466	91376430	A3SS	ENSMUST00000185298.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.83	5	1	5	1	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	ENSMUSG00000055866.10	Per2	chr1	protein_coding	period circadian clock 2
novel_NIR_1325	chr1	91909989	91912100	-	91909974	91912100	A3SS	ENSMUST00000097644.9	novel	-	-	-	-	-	-	0.33	1	2	1	2	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	1.00	5	0	5	0	y	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	ENSMUSG00000026313.17	Hdac4	chr1	protein_coding	histone deacetylase 4
novel_NIR_1326	chr1	91915379	91923779	-	91915379;91919336	91919205;91923779	ES	ENSMUST00000097644.9	novel	0.00	0	2.0	0	2;2	n	0.00	0	3.5	0	2;5	n	0.00	0	5.5	0	5;6	n	0.00	0	1.5	0	1;2	n	0.00	0	7.0	0	3;11	n	0.00	0	4.0	0	4;4	n	0.00	0	9.0	0	9;9	n	0.00	0	3.5	0	1;6	n	0.67	2	1.0	2	2;0	y	0.00	0	5.0	0	4;6	n	0.00	0	4.5	0	7;2	n	0.00	0	5.5	0	4;7	n	ENSMUSG00000026313.17	Hdac4	chr1	protein_coding	histone deacetylase 4
novel_NIR_1327	chr1	92759819	92779745	+	92759819	92763095	3pMXE	ENSMUST00000191373.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034220.8	Gpc1	chr1	protein_coding	glypican 1
novel_NIR_1328	chr1	92759819	92779745	+	92759819	92781069	A3SS	ENSMUST00000045970.8	novel	0.00	0	7	0	7	n	0.29	2	5	2	5	y	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	ENSMUSG00000034220.8	Gpc1	chr1	protein_coding	glypican 1
novel_NIR_1329	chr1	92837700	92838144	-	92837700	92838301	A5SS	ENSMUST00000181575.3	novel	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.80	4	1	4	1	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.75	3	1	3	1	y	1.00	1	0	1	0	n	ENSMUSG00000097251.3	5033417F24Rik	chr1	lncRNA	RIKEN cDNA 5033417F24 gene
novel_NIR_1330	chr1	92845848	92846565	+	92845848	92846628	A3SS	ENSMUST00000179127.8	novel	0.18	2	9	2	9	y	0.20	2	8	2	8	y	-	-	-	-	-	-	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.57	4	3	4	3	y	1.00	1	0	1	0	n	0.10	1	9	1	9	n	ENSMUSG00000026269.15	Rnpepl1	chr1	protein_coding	arginyl aminopeptidase (aminopeptidase B)-like 1
novel_NIR_1331	chr1	92845848	92846565	+	92845848	92846660	A3SS	ENSMUST00000178816.8	novel	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	8	0	8	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.36	4	7	4	7	y	0.12	1	7	1	7	n	0.07	1	13	1	13	n	ENSMUSG00000026269.15	Rnpepl1	chr1	protein_coding	arginyl aminopeptidase (aminopeptidase B)-like 1
novel_NIR_1332	chr1	92845848	92846649	+	92845848	92846628	A3SS	ENSMUST00000179127.8	novel	0.00	0	9	0	9	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	9	0	9	n	ENSMUSG00000026269.15	Rnpepl1	chr1	protein_coding	arginyl aminopeptidase (aminopeptidase B)-like 1
novel_NIR_1333	chr1	92845848	92846649	+	92845848	92846660	A3SS	ENSMUST00000178816.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	8	0	8	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	ENSMUSG00000026269.15	Rnpepl1	chr1	protein_coding	arginyl aminopeptidase (aminopeptidase B)-like 1
novel_NIR_1334	chr1	92845848	92846688	+	92845848	92846628	A3SS	ENSMUST00000179127.8	novel	0.00	0	9	0	9	n	0.11	1	8	1	8	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	1.00	1	0	1	0	n	0.00	0	9	0	9	n	ENSMUSG00000026269.15	Rnpepl1	chr1	protein_coding	arginyl aminopeptidase (aminopeptidase B)-like 1
novel_NIR_1335	chr1	92845848	92846688	+	92845848	92846660	A3SS	ENSMUST00000178816.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	8	0	8	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	0.22	2	7	2	7	y	0.12	1	7	1	7	n	0.00	0	13	0	13	n	ENSMUSG00000026269.15	Rnpepl1	chr1	protein_coding	arginyl aminopeptidase (aminopeptidase B)-like 1
novel_NIR_1336	chr1	93187501	93189371	+	93187529	93189371	A5SS	ENSMUST00000062202.14	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	3	0	3	0	y	0.00	0	5	0	5	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.75	3	1	3	1	y	0.40	2	3	2	3	y	ENSMUSG00000047793.14	Sned1	chr1	protein_coding	sushi, nidogen and EGF-like domains 1
novel_NIR_1337	chr1	93202440	93208203	+	93202440;93203192	93203019;93208203	ES	ENSMUST00000062202.14	novel	0.00	0	5.0	0	5;5	n	0.00	0	3.0	0	3;3	n	-	-	-	-	-	-	0.35	3	5.5	3	5;6	y	0.00	0	4.0	0	6;2	n	0.00	0	1.0	0	1;1	n	0.00	0	4.0	0	4;4	n	-	-	-	-	-	-	0.14	1	6.0	1	7;5	n	0.15	1	5.5	1	8;3	n	0.00	0	3.5	0	3;4	n	0.27	2	5.5	2	4;7	y	ENSMUSG00000047793.14	Sned1	chr1	protein_coding	sushi, nidogen and EGF-like domains 1
novel_NIR_1338	chr1	93213816	93214640	+	93213816	93214650	A3SS	ENSMUST00000062202.14	novel	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	13	0	13	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.20	2	8	2	8	y	ENSMUSG00000047793.14	Sned1	chr1	protein_coding	sushi, nidogen and EGF-like domains 1
novel_NIR_1339	chr1	93213816	93214640	+	93213816	93217030	A3SS	ENSMUST00000163688.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000047793.14	Sned1	chr1	protein_coding	sushi, nidogen and EGF-like domains 1
novel_NIR_1340	chr1	93229311	93230440	-	93229306	93230440	A3SS	ENSMUST00000112944.8	novel	0.50	3	3	3	3	y	0.12	1	7	1	7	n	0.83	5	1	5	1	y	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.41	7	10	7	10	y	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.54	7	6	7	6	y	ENSMUSG00000026273.14	Mterf4	chr1	protein_coding	mitochondrial transcription termination factor 4
novel_NIR_1341	chr1	93229503	93230440	-	93229306	93230440	A3SS	ENSMUST00000112944.8	novel	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.45	5	6	5	6	y	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	ENSMUSG00000026273.14	Mterf4	chr1	protein_coding	mitochondrial transcription termination factor 4
novel_NIR_1342	chr1	93229503	93230440	-	93229517	93230440	A3SS	ENSMUST00000027492.14	novel	0.00	0	59	0	59	n	0.00	0	58	0	58	n	0.00	0	53	0	53	n	0.00	0	70	0	70	n	0.00	0	70	0	70	n	0.18	5	23	5	23	y	0.00	0	66	0	66	n	0.00	0	32	0	32	n	0.00	0	62	0	62	n	0.00	0	78	0	78	n	0.00	0	69	0	69	n	0.00	0	70	0	70	n	ENSMUSG00000026273.14	Mterf4	chr1	protein_coding	mitochondrial transcription termination factor 4
novel_NIR_1343	chr1	93368503	93369908	-	93359240	93369908	A3SS	ENSMUST00000190321.7	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	11	0	11	0	y	-	-	-	-	-	-	1.00	8	0	8	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000034088.16	Hdlbp	chr1	protein_coding	high density lipoprotein (HDL) binding protein
novel_NIR_1344	chr1	93368503	93405929	-	93369972	93405929	A3SS&ES	ENSMUST00000188165.2	novel	0.30	3	7	3	7	y	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.24	4	13	4	13	y	0.16	3	16	3	16	y	0.39	7	11	7	11	y	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.27	3	8	3	8	y	0.17	2	10	2	10	y	0.00	0	8	0	8	n	0.25	4	12	4	12	y	ENSMUSG00000034088.16	Hdlbp	chr1	protein_coding	high density lipoprotein (HDL) binding protein
novel_NIR_1345	chr1	93369562	93369908	-	93359240	93369908	A3SS	ENSMUST00000190321.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	2	0	2	0	y	ENSMUSG00000034088.16	Hdlbp	chr1	protein_coding	high density lipoprotein (HDL) binding protein
novel_NIR_1346	chr1	93369972	93370379	-	93369972	93373011	A5SS	ENSMUST00000186787.7	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.50	3	3	3	3	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034088.16	Hdlbp	chr1	protein_coding	high density lipoprotein (HDL) binding protein
novel_NIR_1347	chr1	93369972	93370379	-	93369972	93389066	A5SS	ENSMUST00000189025.7	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.17	1	5	1	5	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000034088.16	Hdlbp	chr1	protein_coding	high density lipoprotein (HDL) binding protein
novel_NIR_1348	chr1	93369972	93370379	-	93369972	93405929	A5SS	ENSMUST00000188165.2	novel	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.07	1	13	1	13	n	0.06	1	16	1	16	n	0.21	3	11	3	11	y	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.17	2	10	2	10	y	0.00	0	8	0	8	n	0.00	0	12	0	12	n	ENSMUSG00000034088.16	Hdlbp	chr1	protein_coding	high density lipoprotein (HDL) binding protein
novel_NIR_1349	chr1	93369972	93372791	-	93369972	93373011	A5SS	ENSMUST00000186787.7	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	1.00	4	0	4	0	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034088.16	Hdlbp	chr1	protein_coding	high density lipoprotein (HDL) binding protein
novel_NIR_1350	chr1	93369972	93372791	-	93369972	93389066	A5SS	ENSMUST00000189025.7	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.44	4	5	4	5	y	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000034088.16	Hdlbp	chr1	protein_coding	high density lipoprotein (HDL) binding protein
novel_NIR_1351	chr1	93369972	93372791	-	93369972	93405929	A5SS	ENSMUST00000188165.2	novel	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.24	4	13	4	13	y	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.10	1	9	1	9	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.09	1	10	1	10	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	ENSMUSG00000034088.16	Hdlbp	chr1	protein_coding	high density lipoprotein (HDL) binding protein
novel_NIR_1352	chr1	93369972	93373283	-	93369972	93373011	5pMXE	ENSMUST00000186787.7	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	-	-	-	-	-	-	0.88	7	1	7	1	y	0.25	1	3	1	3	n	0.50	1	1	1	1	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034088.16	Hdlbp	chr1	protein_coding	high density lipoprotein (HDL) binding protein
novel_NIR_1353	chr1	93369972	93373283	-	93369972	93389066	A5SS	ENSMUST00000189025.7	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	5	0	5	n	1.00	7	0	7	0	y	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000034088.16	Hdlbp	chr1	protein_coding	high density lipoprotein (HDL) binding protein
novel_NIR_1354	chr1	93369972	93373283	-	93369972	93405929	A5SS	ENSMUST00000188165.2	novel	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.09	1	10	1	10	n	0.00	0	13	0	13	n	0.30	7	16	7	16	y	0.08	1	11	1	11	n	0.10	1	9	1	9	n	0.50	2	2	2	2	y	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	ENSMUSG00000034088.16	Hdlbp	chr1	protein_coding	high density lipoprotein (HDL) binding protein
novel_NIR_1355	chr1	93369972	93378601	-	93369972	93373011	5pMXE	ENSMUST00000186787.7	novel	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	1.00	3	0	3	0	y	0.67	2	1	2	1	y	0.25	1	3	1	3	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	1.00	4	0	4	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000034088.16	Hdlbp	chr1	protein_coding	high density lipoprotein (HDL) binding protein
novel_NIR_1356	chr1	93369972	93378601	-	93369972	93389066	A5SS	ENSMUST00000189025.7	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.38	3	5	3	5	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	1.00	4	0	4	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.40	2	3	2	3	y	ENSMUSG00000034088.16	Hdlbp	chr1	protein_coding	high density lipoprotein (HDL) binding protein
novel_NIR_1357	chr1	93369972	93378601	-	93369972	93405929	A5SS	ENSMUST00000188165.2	novel	0.12	1	7	1	7	n	0.00	0	3	0	3	n	0.09	1	10	1	10	n	0.19	3	13	3	13	n	0.11	2	16	2	16	n	0.08	1	11	1	11	n	0.10	1	9	1	9	n	0.00	0	2	0	2	n	0.33	4	8	4	8	y	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.14	2	12	2	12	n	ENSMUSG00000034088.16	Hdlbp	chr1	protein_coding	high density lipoprotein (HDL) binding protein
novel_NIR_1358	chr1	93369972	93378601	-	93369972	93406435	A5SS	ENSMUST00000170883.8	novel	0.03	1	32	1	32	n	0.00	0	20	0	20	n	0.03	1	31	1	31	n	0.05	3	52	3	52	n	0.03	2	68	2	68	n	0.04	1	23	1	23	n	0.02	1	50	1	50	n	0.00	0	25	0	25	n	0.15	4	22	4	22	y	0.00	0	31	0	31	n	0.00	0	45	0	45	n	0.03	2	62	2	62	n	ENSMUSG00000034088.16	Hdlbp	chr1	protein_coding	high density lipoprotein (HDL) binding protein
novel_NIR_1359	chr1	93369972	93402503	-	93369972	93373011	5pMXE	ENSMUST00000186787.7	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034088.16	Hdlbp	chr1	protein_coding	high density lipoprotein (HDL) binding protein
novel_NIR_1360	chr1	93369972	93402503	-	93369972	93389066	A5SS&ES	ENSMUST00000189025.7	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.29	2	5	2	5	y	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000034088.16	Hdlbp	chr1	protein_coding	high density lipoprotein (HDL) binding protein
novel_NIR_1361	chr1	93369972;93378705	93378601;93405929	-	93369972	93405929	cassetteExon	ENSMUST00000188165.2	novel	0.12	1.0	7	1;1	7	n	0.00	0.0	3	0;0	3	n	0.05	0.5	10	1;0	10	n	0.16	2.5	13	3;2	13	y	0.11	2.0	16	2;2	16	n	0.04	0.5	11	1;0	11	n	0.18	2.0	9	1;3	9	n	0.33	1.0	2	0;2	2	n	0.20	2.0	8	4;0	8	n	0.05	0.5	10	0;1	10	n	0.06	0.5	8	0;1	8	n	0.08	1.0	12	2;0	12	n	ENSMUSG00000034088.16	Hdlbp	chr1	protein_coding	high density lipoprotein (HDL) binding protein
novel_NIR_1362	chr1	93378705	93405929	-	93369972	93405929	A3SS	ENSMUST00000188165.2	novel	0.12	1	7	1	7	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.13	2	13	2	13	n	0.11	2	16	2	16	n	0.00	0	11	0	11	n	0.25	3	9	3	9	n	0.50	2	2	2	2	y	0.00	0	8	0	8	n	0.09	1	10	1	10	n	0.11	1	8	1	8	n	0.00	0	12	0	12	n	ENSMUSG00000034088.16	Hdlbp	chr1	protein_coding	high density lipoprotein (HDL) binding protein
novel_NIR_1363	chr1	93389318	93405929	-	93369972	93405929	A3SS	ENSMUST00000188165.2	novel	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.44	7	9	7	9	y	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.11	1	8	1	8	n	0.00	0	12	0	12	n	ENSMUSG00000034088.16	Hdlbp	chr1	protein_coding	high density lipoprotein (HDL) binding protein
novel_NIR_1364	chr1	93621510	93621782	+	93617007	93621782	A5SS	ENSMUST00000027499.13	novel	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	19	0	19	n	0.21	3	11	3	11	y	0.00	0	22	0	22	n	0.00	0	10	0	10	n	0.00	0	21	0	21	n	0.00	0	20	0	20	n	0.27	3	8	3	8	y	0.00	0	20	0	20	n	0.00	0	14	0	14	n	0.00	0	15	0	15	n	ENSMUSG00000026278.15	Bok	chr1	protein_coding	BCL2-related ovarian killer
novel_NIR_1365	chr1	93621510	93621782	+	93621690	93621782	5pMXE	ENSMUST00000185685.2	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.33	3	6	3	6	y	0.00	0	22	0	22	n	0.00	0	18	0	18	n	0.00	0	18	0	18	n	0.00	0	17	0	17	n	0.30	3	7	3	7	y	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	ENSMUSG00000026278.15	Bok	chr1	protein_coding	BCL2-related ovarian killer
novel_NIR_1366	chr1	93633377	93640810	-	93633377	93634956	A5SS&ES	ENSMUST00000187445.2	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000026279.15	Thap4	chr1	protein_coding	THAP domain containing 4
novel_NIR_1367	chr1	93642183	93642620	-	93635136	93642620	A3SS	ENSMUST00000187445.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026279.15	Thap4	chr1	protein_coding	THAP domain containing 4
novel_NIR_1368	chr1	93653038	93682179	-	93653038	93659579	5pMXE	ENSMUST00000189728.7	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000026279.15	Thap4	chr1	protein_coding	THAP domain containing 4
novel_NIR_1369	chr1	93653038	93682179	-	93653038;93678707	93677660;93682179	ES	ENSMUST00000112905.4	novel	0.00	0	15.5	0	0;31	n	0.00	0	10.0	0	0;20	n	0.00	0	23.0	0	0;46	n	0.00	0	16.5	0	0;33	n	0.00	0	18.0	0	0;36	n	0.00	0	9.0	0	0;18	n	0.05	1	20.5	1	0;41	n	0.17	2	10.0	2	0;20	y	0.00	0	8.0	0	0;16	n	0.00	0	25.0	0	0;50	n	0.00	0	7.0	0	0;14	n	0.00	0	12.0	0	0;24	n	ENSMUSG00000026279.15	Thap4	chr1	protein_coding	THAP domain containing 4
novel_NIR_1370	chr1	93694480	93695775	+	93679303	93695775	A5SS	ENSMUST00000149436.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026280.18	Atg4b	chr1	protein_coding	autophagy related 4B, cysteine peptidase
novel_NIR_1371	chr1	93694480	93695775	+	93683178	93695775	A5SS	ENSMUST00000189152.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000026280.18	Atg4b	chr1	protein_coding	autophagy related 4B, cysteine peptidase
novel_NIR_1372	chr1	93726192	93728230	-	93726192	93726498	5pMXE	ENSMUST00000144106.2	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.50	2	2	2	2	y	ENSMUSG00000026281.16	Dtymk	chr1	protein_coding	deoxythymidylate kinase
novel_NIR_1373	chr1	93754362	93755463	+	93754362	93756928	A3SS	ENSMUST00000097633.10	novel	0.00	0	24	0	24	n	0.00	0	8	0	8	n	0.00	0	18	0	18	n	0.02	1	40	1	40	n	0.03	1	38	1	38	n	0.23	3	10	3	10	y	0.03	1	36	1	36	n	0.00	0	22	0	22	n	0.06	2	32	2	32	n	0.00	0	44	0	44	n	0.00	0	22	0	22	n	0.00	0	47	0	47	n	ENSMUSG00000073609.10	D2hgdh	chr1	protein_coding	D-2-hydroxyglutarate dehydrogenase
novel_NIR_1374	chr1	93754593	93755463	+	93754593	93756928	A3SS	ENSMUST00000149397.8	novel	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	4	0	4	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	n	-	-	-	-	-	-	ENSMUSG00000073609.10	D2hgdh	chr1	protein_coding	D-2-hydroxyglutarate dehydrogenase
novel_NIR_1375	chr1	93754593;93755529	93755463;93756928	+	93754593	93756928	cassetteExon	ENSMUST00000149397.8	novel	1.00	2.0	0	4;0	0	n	1.00	0.5	0	1;0	0	n	-	-	-	-	-	-	0.50	1.0	1	0;2	1	n	1.00	3.5	0	4;3	0	y	1.00	0.5	0	1;0	0	n	1.00	0.5	0	0;1	0	n	1.00	1.5	0	3;0	0	n	1.00	0.5	0	1;0	0	n	1.00	1.0	0	2;0	0	n	1.00	1.5	0	2;1	0	n	-	-	-	-	-	-	ENSMUSG00000073609.10	D2hgdh	chr1	protein_coding	D-2-hydroxyglutarate dehydrogenase
novel_NIR_1376	chr1	93755529	93756928	+	93754593	93756928	A5SS	ENSMUST00000149397.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	1.00	3	0	3	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000073609.10	D2hgdh	chr1	protein_coding	D-2-hydroxyglutarate dehydrogenase
novel_NIR_1377	chr1	93757618	93757786	+	93757618	93763009	A3SS	ENSMUST00000186783.2	novel	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.12	1	7	1	7	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000073609.10	D2hgdh	chr1	protein_coding	D-2-hydroxyglutarate dehydrogenase
novel_NIR_1378	chr1	93757618	93757786	+	93757618	93765662	A3SS	ENSMUST00000189154.2	novel	0.33	2	4	2	4	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000073609.10	D2hgdh	chr1	protein_coding	D-2-hydroxyglutarate dehydrogenase
novel_NIR_1379	chr1	93757618	93757786	+	93757618	93766543	A3SS	ENSMUST00000188532.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000073609.10	D2hgdh	chr1	protein_coding	D-2-hydroxyglutarate dehydrogenase
novel_NIR_1380	chr1	93760363	93763009	+	93757618	93763009	A5SS	ENSMUST00000186783.2	novel	0.00	0	3	0	3	n	0.67	4	2	4	2	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.50	3	3	3	3	y	-	-	-	-	-	-	0.00	0	7	0	7	n	0.20	1	4	1	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000073609.10	D2hgdh	chr1	protein_coding	D-2-hydroxyglutarate dehydrogenase
novel_NIR_1381	chr1	93760363	93763009	+	93760511	93763009	A5SS	ENSMUST00000097633.10	novel	0.00	0	32	0	32	n	0.18	4	18	4	18	y	0.00	0	26	0	26	n	0.00	0	53	0	53	n	0.06	3	49	3	49	n	0.00	0	29	0	29	n	0.00	0	57	0	57	n	0.05	1	21	1	21	n	0.00	0	37	0	37	n	0.00	0	65	0	65	n	0.00	0	62	0	62	n	0.00	0	55	0	55	n	ENSMUSG00000073609.10	D2hgdh	chr1	protein_coding	D-2-hydroxyglutarate dehydrogenase
novel_NIR_1382	chr1	93839081	93844234	+	93839081;93841935	93841770;93844234	ES	ENSMUST00000190039.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1.0	0	0;2	n	0.00	0	1.0	0	0;2	n	1.00	2	0.0	2	0;0	y	0.00	0	0.5	0	0;1	n	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	ENSMUSG00000101660.2	Gm18666	chr1	unprocessed_pseudogene	predicted gene, 18666
novel_NIR_1383	chr1	9620872	9621942	+	9620872	9623148	A3SS	ENSMUST00000130927.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	1.00	2	0	2	0	y	ENSMUSG00000025911.15	Adhfe1	chr1	protein_coding	alcohol dehydrogenase, iron containing, 1
novel_NIR_1384	chr1	9646694	9650448	+	9646694	9650445	A3SS	ENSMUST00000190654.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000025911.15	Adhfe1	chr1	protein_coding	alcohol dehydrogenase, iron containing, 1
novel_NIR_1385	chr1	9741921	9742437	-	9740237	9742437	A3SS	ENSMUST00000115468.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025912.17	Mybl1	chr1	protein_coding	myeloblastosis oncogene-like 1
novel_NIR_1386	chr1	9741921	9742437	-	9741983	9742437	A3SS	ENSMUST00000088658.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.75	3	1	3	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000025912.17	Mybl1	chr1	protein_coding	myeloblastosis oncogene-like 1
novel_NIR_1387	chr1	97582414	97585166	-	97582414	97588456	A5SS	ENSMUST00000153115.8	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.18	3	14	3	14	y	-	-	-	-	-	-	0.22	2	7	2	7	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000044768.17	Macir	chr1	protein_coding	macrophage immunometabolism regulator
novel_NIR_1388	chr1	97582414	97585166	-	97582414	97589280	A5SS	ENSMUST00000142234.2	novel	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.30	3	7	3	7	y	0.00	0	5	0	5	n	0.33	2	4	2	4	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	ENSMUSG00000044768.17	Macir	chr1	protein_coding	macrophage immunometabolism regulator
novel_NIR_1389	chr1	97582414	97589013	-	97582414	97588456	A5SS	ENSMUST00000153115.8	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	14	0	14	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.50	2	2	2	2	y	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000044768.17	Macir	chr1	protein_coding	macrophage immunometabolism regulator
novel_NIR_1390	chr1	97582414	97589013	-	97582414	97589280	A5SS	ENSMUST00000142234.2	novel	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.25	2	6	2	6	y	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	ENSMUSG00000044768.17	Macir	chr1	protein_coding	macrophage immunometabolism regulator
novel_NIR_1391	chr1	97644329	97647559	-	97640869	97647559	A3SS	ENSMUST00000042509.13	novel	0.16	5	26	5	26	y	0.21	3	11	3	11	y	0.02	1	54	1	54	n	0.55	12	10	12	10	y	0.30	10	23	10	23	y	0.30	13	31	13	31	y	0.29	10	25	10	25	y	0.29	7	17	7	17	y	0.38	8	13	8	13	y	0.41	11	16	11	16	y	0.32	7	15	7	15	y	0.33	10	20	10	20	y	ENSMUSG00000040648.16	Ppip5k2	chr1	protein_coding	diphosphoinositol pentakisphosphate kinase 2
novel_NIR_1392	chr1	97644329	97647559	-	97644329;97645286	97645167;97647559	ES	ENSMUST00000112845.8	novel	0.12	5	37.0	5	35;39	n	0.20	3	12.0	3	15;9	y	0.02	1	39.5	1	47;32	n	0.29	12	29.0	12	27;31	y	0.17	10	49.5	10	43;56	y	0.29	13	32.5	13	35;30	y	0.24	10	31.0	10	34;28	y	0.19	7	30.0	7	31;29	y	0.30	8	19.0	8	18;20	y	0.29	11	27.5	11	22;33	y	0.39	7	11.0	7	12;10	y	0.26	10	28.5	10	27;30	y	ENSMUSG00000040648.16	Ppip5k2	chr1	protein_coding	diphosphoinositol pentakisphosphate kinase 2
novel_NIR_1393	chr1	97644365	97645167	-	97644329	97645167	A3SS	ENSMUST00000112845.8	novel	0.05	2	35	2	35	n	0.06	1	15	1	15	n	0.02	1	47	1	47	n	0.04	1	27	1	27	n	0.16	8	43	8	43	y	0.08	3	35	3	35	n	0.03	1	34	1	34	n	0.03	1	31	1	31	n	0.00	0	18	0	18	n	0.04	1	22	1	22	n	0.00	0	12	0	12	n	0.00	0	27	0	27	n	ENSMUSG00000040648.16	Ppip5k2	chr1	protein_coding	diphosphoinositol pentakisphosphate kinase 2
novel_NIR_1394	chr1	97668324	97668549	-	97668369	97668549	A3SS	ENSMUST00000042509.13	novel	0.00	0	23	0	23	n	0.00	0	11	0	11	n	0.00	0	63	0	63	n	0.00	0	29	0	29	n	0.00	0	55	0	55	n	0.00	0	52	0	52	n	0.00	0	43	0	43	n	0.00	0	42	0	42	n	0.00	0	19	0	19	n	0.00	0	18	0	18	n	0.10	2	18	2	18	n	0.15	4	22	4	22	y	ENSMUSG00000040648.16	Ppip5k2	chr1	protein_coding	diphosphoinositol pentakisphosphate kinase 2
novel_NIR_1395	chr1	97668667	97668795	-	97668670	97668795	A3SS	ENSMUST00000042509.13	novel	0.23	7	23	7	23	y	0.07	1	13	1	13	n	0.06	5	78	5	78	n	0.21	9	34	9	34	y	0.17	11	52	11	52	y	0.27	15	40	15	40	y	0.11	5	39	5	39	n	0.14	7	42	7	42	n	0.04	1	23	1	23	n	0.11	6	48	6	48	n	0.17	4	20	4	20	y	0.20	8	32	8	32	y	ENSMUSG00000040648.16	Ppip5k2	chr1	protein_coding	diphosphoinositol pentakisphosphate kinase 2
novel_NIR_1396	chr1	97683696	97686894	-	97683696;97684659	97684569;97686894	ES	ENSMUST00000042509.13	novel	0.17	4	19.5	4	20;19	y	0.19	3	12.5	3	13;12	y	0.00	0	75.0	0	73;77	n	0.03	1	34.5	1	36;33	n	0.00	0	67.0	0	73;61	n	0.02	1	41.5	1	32;51	n	0.00	0	35.0	0	31;39	n	0.00	0	45.0	0	44;46	n	0.00	0	21.0	0	20;22	n	0.03	1	33.0	1	30;36	n	0.00	0	10.0	0	9;11	n	0.00	0	36.0	0	44;28	n	ENSMUSG00000040648.16	Ppip5k2	chr1	protein_coding	diphosphoinositol pentakisphosphate kinase 2
novel_NIR_1397	chr1	97689546	97696991	-	97689546	97697580	A5SS	ENSMUST00000042509.13	novel	0.06	1	15	1	15	n	0.25	1	3	1	3	n	0.00	0	64	0	64	n	0.13	4	27	4	27	n	0.18	6	27	6	27	y	0.18	5	23	5	23	y	0.14	4	24	4	24	n	0.00	0	29	0	29	n	0.11	1	8	1	8	n	0.00	0	21	0	21	n	0.00	0	17	0	17	n	0.00	0	23	0	23	n	ENSMUSG00000040648.16	Ppip5k2	chr1	protein_coding	diphosphoinositol pentakisphosphate kinase 2
novel_NIR_1398	chr1	97749713	97753562	-	97749713	97759180	A5SS	ENSMUST00000162681.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.36	5	9	5	9	y	0.29	2	5	2	5	y	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.55	6	5	6	5	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.40	2	3	2	3	y	0.00	0	3	0	3	n	ENSMUSG00000026335.17	Pam	chr1	protein_coding	peptidylglycine alpha-amidating monooxygenase
novel_NIR_1399	chr1	97749713	97753562	-	97750714	97753562	3pMXE	ENSMUST00000160210.2	novel	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.07	5	66	5	66	n	0.10	2	19	2	19	n	0.00	0	37	0	37	n	0.00	0	19	0	19	n	0.15	6	35	6	35	y	0.00	0	16	0	16	n	0.00	0	14	0	14	n	0.00	0	18	0	18	n	0.14	2	12	2	12	n	0.00	0	9	0	9	n	ENSMUSG00000026335.17	Pam	chr1	protein_coding	peptidylglycine alpha-amidating monooxygenase
novel_NIR_1400	chr1	9818870	9822674	+	9818829	9822674	A5SS	ENSMUST00000181821.8	novel	1.00	7	0	7	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	0.89	8	1	8	1	y	1.00	1	0	1	0	n	1.00	6	0	6	0	y	-	-	-	-	-	-	0.89	8	1	8	1	y	0.67	8	4	8	4	y	1.00	1	0	1	0	n	0.75	3	1	3	1	y	ENSMUSG00000097893.9	1700034P13Rik	chr1	lncRNA	RIKEN cDNA 1700034P13 gene
novel_NIR_1401	chr1	9818870	9822674	+	9818870;9820630	9820583;9822674	ES	ENSMUST00000207445.2	novel	1.00	7	0.0	7	0;0	y	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	1.00	7	0.0	7	0;0	y	1.00	8	0.0	8	0;0	y	1.00	1	0.0	1	0;0	n	1.00	6	0.0	6	0;0	y	-	-	-	-	-	-	1.00	8	0.0	8	0;0	y	1.00	8	0.0	8	0;0	y	1.00	1	0.0	1	0;0	n	1.00	3	0.0	3	0;0	y	ENSMUSG00000097893.9	1700034P13Rik	chr1	lncRNA	RIKEN cDNA 1700034P13 gene
novel_NIR_1402	chr1	9818870	9822674	+	9818870;9822153	9822034;9822674	ES	ENSMUST00000189431.2	novel	0.88	7	1.0	7	0;2	y	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	1.00	7	0.0	7	0;0	y	1.00	8	0.0	8	0;0	y	1.00	1	0.0	1	0;0	n	0.92	6	0.5	6	1;0	y	-	-	-	-	-	-	1.00	8	0.0	8	0;0	y	1.00	8	0.0	8	0;0	y	1.00	1	0.0	1	0;0	n	1.00	3	0.0	3	0;0	y	ENSMUSG00000097893.9	1700034P13Rik	chr1	lncRNA	RIKEN cDNA 1700034P13 gene
novel_NIR_1403	chr1	9897344	9908978	+	9897344	9935356	A3SS	ENSMUST00000188782.7	novel	0.09	1	10	1	10	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.17	1	5	1	5	n	0.18	2	9	2	9	y	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.25	1	3	1	3	n	0.00	0	11	0	11	n	ENSMUSG00000025915.15	Sgk3	chr1	protein_coding	serum/glucocorticoid regulated kinase 3
novel_NIR_1404	chr10	10319209	10325711	-	10319209;10321993	10321901;10325711	ES	ENSMUST00000179956.8	novel	0.00	0	1.5	0	2;1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	0.00	0	0.5	0	0;1	n	-	-	-	-	-	-	0.00	0	1.5	0	1;2	n	-	-	-	-	-	-	0.00	0	1.5	0	2;1	n	ENSMUSG00000050994.21	Adgb	chr10	protein_coding	androglobin
novel_NIR_1405	chr10	10426549	10426818	-	10426700	10426818	A3SS	ENSMUST00000220018.3	novel	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.50	2	2	2	2	y	ENSMUSG00000019832.6	Rab32	chr10	protein_coding	RAB32, member RAS oncogene family
novel_NIR_1406	chr10	106763723	106766984	+	106763723;106765006	106764915;106766984	ES	ENSMUST00000029404.17	novel	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000053825.16	Ppfia2	chr10	protein_coding	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
novel_NIR_1407	chr10	107108611	107215941	+	107107803	107215941	A5SS	ENSMUST00000105280.5	novel	0.00	0	2	0	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.25	2	6	2	6	y	0.00	0	6	0	6	n	ENSMUSG00000019906.16	Lin7a	chr10	protein_coding	lin-7 homolog A (C. elegans)
novel_NIR_1408	chr10	107108611	107215941	+	107109125	107215941	A5SS	ENSMUST00000218031.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000019906.16	Lin7a	chr10	protein_coding	lin-7 homolog A (C. elegans)
novel_NIR_1409	chr10	107159864	107215941	+	107107803	107215941	A5SS	ENSMUST00000105280.5	novel	0.00	0	2	0	2	n	0.29	2	5	2	5	y	-	-	-	-	-	-	0.25	2	6	2	6	y	0.33	3	6	3	6	y	-	-	-	-	-	-	0.17	1	5	1	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	6	0	6	n	0.00	0	6	0	6	n	ENSMUSG00000019906.16	Lin7a	chr10	protein_coding	lin-7 homolog A (C. elegans)
novel_NIR_1410	chr10	107159864	107215941	+	107109125	107215941	A5SS	ENSMUST00000218031.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000019906.16	Lin7a	chr10	protein_coding	lin-7 homolog A (C. elegans)
novel_NIR_1411	chr10	108110049	108111619	+	108110049	108120138	A3SS	ENSMUST00000219559.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000019907.11	Ppp1r12a	chr10	protein_coding	protein phosphatase 1, regulatory subunit 12A
novel_NIR_1412	chr10	108526924	108546628	-	108526924	108666967	A5SS	ENSMUST00000105276.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	6	0	6	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	7	0	7	0	y	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	ENSMUSG00000035864.15	Syt1	chr10	protein_coding	synaptotagmin I
novel_NIR_1413	chr10	11036361	11038553	+	11036361;11037971	11037863;11038553	ES	ENSMUST00000159810.8	novel	0.00	0	3.5	0	4;3	n	0.00	0	4.0	0	4;4	n	0.00	0	4.5	0	5;4	n	0.00	0	10.5	0	8;13	n	0.00	0	10.0	0	9;11	n	0.00	0	4.5	0	5;4	n	0.00	0	3.0	0	4;2	n	0.29	2	5.0	2	5;5	y	0.00	0	6.5	0	7;6	n	0.00	0	9.5	0	12;7	n	0.00	0	4.5	0	4;5	n	0.00	0	10.0	0	13;7	n	ENSMUSG00000090112.9	Shprh	chr10	protein_coding	SNF2 histone linker PHD RING helicase
novel_NIR_1414	chr10	11038806	11040093	+	11038806	11040089	A3SS	ENSMUST00000159810.8	novel	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	ENSMUSG00000090112.9	Shprh	chr10	protein_coding	SNF2 histone linker PHD RING helicase
novel_NIR_1415	chr10	11045624	11045723	+	11043656	11045723	A5SS	ENSMUST00000159810.8	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.17	2	10	2	10	y	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	20	0	20	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	ENSMUSG00000090112.9	Shprh	chr10	protein_coding	SNF2 histone linker PHD RING helicase
novel_NIR_1416	chr10	11063769	11065375	+	11063780	11065375	A5SS	ENSMUST00000159553.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000090112.9	Shprh	chr10	protein_coding	SNF2 histone linker PHD RING helicase
novel_NIR_1417	chr10	110763686	110767816	+	110767222	110767816	5pMXE	ENSMUST00000219188.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000020186.8	Csrp2	chr10	protein_coding	cysteine and glycine-rich protein 2
novel_NIR_1418	chr10	111040701	111069423	+	111040701	111060533	A3SS&ES	ENSMUST00000105275.9	novel	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.29	2	5	2	5	y	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.21	3	11	3	11	y	0.00	0	5	0	5	n	0.17	1	5	1	5	n	0.00	0	9	0	9	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	ENSMUSG00000020189.16	Osbpl8	chr10	protein_coding	oxysterol binding protein-like 8
novel_NIR_1419	chr10	111040701	111069423	+	111040701	111069414	A3SS	ENSMUST00000095310.3	novel	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.18	3	14	3	14	y	0.00	0	5	0	5	n	0.12	1	7	1	7	n	0.00	0	7	0	7	n	0.50	1	1	1	1	n	0.00	0	8	0	8	n	ENSMUSG00000020189.16	Osbpl8	chr10	protein_coding	oxysterol binding protein-like 8
novel_NIR_1420	chr10	111431111	111443884	+	111435199	111443884	5pMXE	ENSMUST00000219137.2	novel	0.28	5	13	5	13	y	0.00	0	14	0	14	n	0.00	0	3	0	3	n	0.04	1	27	1	27	n	0.09	2	21	2	21	n	0.00	0	2	0	2	n	0.15	4	22	4	22	y	0.20	1	4	1	4	n	0.07	2	25	2	25	n	0.05	2	38	2	38	n	0.12	4	28	4	28	n	0.24	7	22	7	22	y	ENSMUSG00000112249.2	Gm30262	chr10	lncRNA	predicted gene, 30262
novel_NIR_1421	chr10	111431565	111443884	+	111435199	111443884	5pMXE	ENSMUST00000219137.2	novel	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.25	1	3	1	3	n	0.00	0	27	0	27	n	0.09	2	21	2	21	n	0.33	1	2	1	2	n	0.12	3	22	3	22	n	0.33	2	4	2	4	y	0.07	2	25	2	25	n	0.12	5	38	5	38	n	0.03	1	28	1	28	n	0.04	1	22	1	22	n	ENSMUSG00000112249.2	Gm30262	chr10	lncRNA	predicted gene, 30262
novel_NIR_1422	chr10	111432082	111443884	+	111435199	111443884	5pMXE	ENSMUST00000219137.2	novel	0.00	0	13	0	13	n	0.12	2	14	2	14	n	0.00	0	3	0	3	n	0.04	1	27	1	27	n	0.00	0	21	0	21	n	0.00	0	2	0	2	n	0.19	5	22	5	22	y	0.00	0	4	0	4	n	0.04	1	25	1	25	n	0.00	0	38	0	38	n	0.20	7	28	7	28	y	0.08	2	22	2	22	n	ENSMUSG00000112249.2	Gm30262	chr10	lncRNA	predicted gene, 30262
novel_NIR_1423	chr10	111443988	111444394	+	111443988	111444389	A3SS	ENSMUST00000219137.2	novel	0.00	0	26	0	26	n	0.00	0	24	0	24	n	0.00	0	18	0	18	n	0.00	0	66	0	66	n	0.20	6	24	6	24	y	0.00	0	6	0	6	n	0.00	0	33	0	33	n	0.00	0	16	0	16	n	0.03	1	37	1	37	n	0.00	0	79	0	79	n	0.00	0	60	0	60	n	0.00	0	62	0	62	n	ENSMUSG00000112249.2	Gm30262	chr10	lncRNA	predicted gene, 30262
novel_NIR_1424	chr10	111444612	111447055	+	111444612	111446900	A3SS	ENSMUST00000219137.2	novel	0.00	0	66	0	66	n	0.05	3	63	3	63	n	0.05	5	86	5	86	n	0.09	8	78	8	78	n	0.09	12	122	12	122	n	0.03	2	73	2	73	n	0.06	6	99	6	99	n	0.15	14	80	14	80	y	0.08	4	47	4	47	n	0.02	2	88	2	88	n	0.07	4	57	4	57	n	0.05	4	77	4	77	n	ENSMUSG00000112249.2	Gm30262	chr10	lncRNA	predicted gene, 30262
novel_NIR_1425	chr10	111444612;111446678	111446432;111446900	+	111444612	111446900	cassetteExon	ENSMUST00000219137.2	novel	0.21	18.0	66	17;19	66	y	0.25	21.0	63	23;19	63	y	0.12	12.0	86	11;13	86	n	0.27	29.5	78	27;32	78	y	0.15	21.0	122	22;20	122	y	0.09	7.5	73	10;5	73	n	0.15	17.0	99	14;20	99	y	0.12	10.5	80	18;3	80	n	0.37	28.0	47	20;36	47	y	0.32	41.5	88	42;41	88	y	0.40	38.5	57	40;37	57	y	0.32	36.5	77	33;40	77	y	ENSMUSG00000112249.2	Gm30262	chr10	lncRNA	predicted gene, 30262
novel_NIR_1426	chr10	11157633	11165264	+	11157467	11165264	A5SS	ENSMUST00000070300.5	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000047648.14	Fbxo30	chr10	protein_coding	F-box protein 30
novel_NIR_1427	chr10	114278528	114280584	-	114249221	114280584	A3SS	ENSMUST00000061632.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000050663.9	Trhde	chr10	protein_coding	TRH-degrading enzyme
novel_NIR_1428	chr10	115056313;115056643	115056593;115057488	-	115056313	115057488	cassetteExon	ENSMUST00000020339.10	novel	0.14	8.0	48	8;8	48	n	0.14	5.5	34	8;3	34	n	0.12	12.5	90	16;9	90	n	0.15	13.0	71	11;15	71	y	0.18	18.5	82	16;21	82	y	0.25	13.5	41	8;19	41	y	0.11	8.5	67	9;8	67	n	0.24	15.0	47	17;13	47	y	0.22	8.5	31	8;9	31	y	0.12	7.5	57	11;4	57	n	0.22	8.0	29	10;6	29	y	0.15	14.0	77	9;19	77	y	ENSMUSG00000020130.10	Tbc1d15	chr10	protein_coding	TBC1 domain family, member 15
novel_NIR_1429	chr10	115177244	115178379	-	115175791	115178379	A3SS	ENSMUST00000218731.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	6	0	6	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000069520.7	Tmem19	chr10	protein_coding	transmembrane protein 19
novel_NIR_1430	chr10	115183688	115197714	-	115183688	115184812	5pMXE	ENSMUST00000219821.2	novel	1.00	12	0	12	0	y	-	-	-	-	-	-	0.56	5	4	5	4	y	1.00	3	0	3	0	y	0.93	13	1	13	1	y	0.83	5	1	5	1	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.75	3	1	3	1	y	0.80	8	2	8	2	y	0.80	4	1	4	1	y	ENSMUSG00000069520.7	Tmem19	chr10	protein_coding	transmembrane protein 19
novel_NIR_1431	chr10	115183688	115197812	-	115183688	115184812	5pMXE	ENSMUST00000219821.2	novel	1.00	3	0	3	0	y	1.00	2	0	2	0	y	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.67	2	1	2	1	y	0.33	1	2	1	2	n	0.75	3	1	3	1	y	ENSMUSG00000069520.7	Tmem19	chr10	protein_coding	transmembrane protein 19
novel_NIR_1432	chr10	115197752	115197970	-	115197752	115197865	A5SS	ENSMUST00000219890.2	novel	0.75	3	1	3	1	y	0.00	0	4	0	4	n	1.00	1	0	1	0	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.20	1	4	1	4	n	0.33	1	2	1	2	n	-	-	-	-	-	-	ENSMUSG00000069520.7	Tmem19	chr10	protein_coding	transmembrane protein 19
novel_NIR_1433	chr10	115197752;115198059	115197970;115198292	-	115197752	115198292	cassetteExon	ENSMUST00000217884.2	novel	0.56	2.5	2	3;2	2	y	0.00	0.0	1	0;0	1	n	0.14	0.5	3	1;0	3	n	0.00	0.0	2	0;0	2	n	0.00	0.0	4	0;0	4	n	-	-	-	-	-	-	0.00	0.0	4	0;0	4	n	0.00	0.0	1	0;0	1	n	0.00	0.0	3	0;0	3	n	0.06	0.5	8	1;0	8	n	1.00	0.5	0	1;0	0	n	0.00	0.0	2	0;0	2	n	ENSMUSG00000069520.7	Tmem19	chr10	protein_coding	transmembrane protein 19
novel_NIR_1434	chr10	115197752;115198131	115197970;115198292	-	115197752	115198292	cassetteExon	ENSMUST00000217884.2	novel	0.60	3.0	2	3;3	2	y	0.00	0.0	1	0;0	1	n	0.33	1.5	3	1;2	3	n	0.20	0.5	2	0;1	2	n	0.20	1.0	4	0;2	4	n	-	-	-	-	-	-	0.00	0.0	4	0;0	4	n	0.00	0.0	1	0;0	1	n	0.14	0.5	3	0;1	3	n	0.27	3.0	8	1;5	8	n	1.00	1.0	0	1;1	0	n	0.00	0.0	2	0;0	2	n	ENSMUSG00000069520.7	Tmem19	chr10	protein_coding	transmembrane protein 19
novel_NIR_1435	chr10	115197864	115197953	-	115197864	115197970	A5SS	ENSMUST00000218731.2	novel	0.03	1	30	1	30	n	0.00	0	8	0	8	n	0.00	0	15	0	15	n	0.00	0	36	0	36	n	0.12	3	23	3	23	n	0.25	2	6	2	6	y	0.00	0	52	0	52	n	0.23	3	10	3	10	y	0.04	1	26	1	26	n	0.06	2	31	2	31	n	0.00	0	27	0	27	n	0.00	0	31	0	31	n	ENSMUSG00000069520.7	Tmem19	chr10	protein_coding	transmembrane protein 19
novel_NIR_1436	chr10	115197864	115197953	-	115197864	115198292	A5SS	ENSMUST00000220336.2	novel	0.08	1	11	1	11	n	0.00	0	6	0	6	n	0.00	0	18	0	18	n	0.00	0	6	0	6	n	0.23	3	10	3	10	n	0.29	2	5	2	5	y	0.00	0	14	0	14	n	0.38	3	5	3	5	y	0.11	1	8	1	8	n	0.09	2	21	2	21	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	ENSMUSG00000069520.7	Tmem19	chr10	protein_coding	transmembrane protein 19
novel_NIR_1437	chr10	115197864;115198131	115197953;115198292	-	115197864	115198292	cassetteExon	ENSMUST00000220336.2	novel	0.15	2.0	11	1;3	11	n	0.00	0.0	6	0;0	6	n	0.05	1.0	18	0;2	18	n	0.08	0.5	6	0;1	6	n	0.20	2.5	10	3;2	10	y	0.17	1.0	5	2;0	5	n	0.00	0.0	14	0;0	14	n	0.23	1.5	5	3;0	5	n	0.11	1.0	8	1;1	8	n	0.14	3.5	21	2;5	21	n	0.04	0.5	11	0;1	11	n	0.00	0.0	4	0;0	4	n	ENSMUSG00000069520.7	Tmem19	chr10	protein_coding	transmembrane protein 19
novel_NIR_1438	chr10	115198131	115198292	-	115197752	115198292	A3SS	ENSMUST00000217884.2	novel	0.60	3	2	3	2	n	0.00	0	1	0	1	n	0.40	2	3	2	3	n	0.33	1	2	1	2	n	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.38	5	8	5	8	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	ENSMUSG00000069520.7	Tmem19	chr10	protein_coding	transmembrane protein 19
novel_NIR_1439	chr10	115239225	115240102	+	115239225	115240105	A3SS	ENSMUST00000036044.9	novel	0.05	1	21	1	21	n	0.00	0	9	0	9	n	0.00	0	24	0	24	n	0.31	4	9	4	9	y	0.03	1	36	1	36	n	0.00	0	11	0	11	n	0.15	2	11	2	11	y	0.06	1	17	1	17	n	0.00	0	18	0	18	n	0.04	1	22	1	22	n	0.00	0	23	0	23	n	0.08	3	35	3	35	n	ENSMUSG00000034163.11	Zfc3h1	chr10	protein_coding	zinc finger, C3H1-type containing
novel_NIR_1440	chr10	115248494	115249867	+	115248371	115249867	A5SS	ENSMUST00000036044.9	novel	0.18	4	18	4	18	y	0.00	0	13	0	13	n	0.08	4	49	4	49	n	0.21	7	27	7	27	y	0.11	4	34	4	34	n	0.31	5	11	5	11	y	0.14	4	25	4	25	n	0.07	2	25	2	25	n	0.03	1	30	1	30	n	0.30	10	23	10	23	y	0.17	4	20	4	20	y	0.08	4	45	4	45	n	ENSMUSG00000034163.11	Zfc3h1	chr10	protein_coding	zinc finger, C3H1-type containing
novel_NIR_1441	chr10	115306538	115307872	-	115302532	115307872	A3SS	ENSMUST00000172806.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020140.16	Lgr5	chr10	protein_coding	leucine rich repeat containing G protein coupled receptor 5
novel_NIR_1442	chr10	115306538	115307872	-	115306540	115307872	A3SS	ENSMUST00000020350.15	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	ENSMUSG00000020140.16	Lgr5	chr10	protein_coding	leucine rich repeat containing G protein coupled receptor 5
novel_NIR_1443	chr10	115356582	115394705	-	115356582	115423187	A5SS	ENSMUST00000020350.15	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020140.16	Lgr5	chr10	protein_coding	leucine rich repeat containing G protein coupled receptor 5
novel_NIR_1444	chr10	115416856	115423187	-	115356582	115423187	A3SS	ENSMUST00000020350.15	novel	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020140.16	Lgr5	chr10	protein_coding	leucine rich repeat containing G protein coupled receptor 5
novel_NIR_1445	chr10	116186820	116188611	+	116186820	116189696	A3SS	ENSMUST00000218553.2	novel	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.18	2	9	2	9	y	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.00	0	26	0	26	n	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.07	1	13	1	13	n	ENSMUSG00000020154.11	Ptprb	chr10	protein_coding	protein tyrosine phosphatase, receptor type, B
novel_NIR_1446	chr10	116343093	116353264	-	116343093	116363732	A5SS	ENSMUST00000171944.8	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.40	2	3	2	3	y	ENSMUSG00000020166.16	Cnot2	chr10	protein_coding	CCR4-NOT transcription complex, subunit 2
novel_NIR_1447	chr10	116343093	116353264	-	116343093	116384938	A5SS	ENSMUST00000105265.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000020166.16	Cnot2	chr10	protein_coding	CCR4-NOT transcription complex, subunit 2
novel_NIR_1448	chr10	116385080	116411643	-	116385080	116416386	A5SS	ENSMUST00000218490.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.33	2	4	2	4	y	ENSMUSG00000020166.16	Cnot2	chr10	protein_coding	CCR4-NOT transcription complex, subunit 2
novel_NIR_1449	chr10	116915204	116916927	-	116914851	116916927	A3SS	ENSMUST00000020381.5	novel	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.06	1	16	1	16	n	0.16	3	16	3	16	y	0.00	0	19	0	19	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.06	1	16	1	16	n	0.00	0	3	0	3	n	0.00	0	16	0	16	n	ENSMUSG00000020170.5	Frs2	chr10	protein_coding	fibroblast growth factor receptor substrate 2
novel_NIR_1450	chr10	117246099	117248519	-	117246099	117249631	A5SS	ENSMUST00000220040.2	novel	0.00	0	18	0	18	n	0.11	3	25	3	25	n	0.00	0	1	0	1	n	0.19	5	21	5	21	y	0.28	5	13	5	13	y	1.00	1	0	1	0	n	0.35	7	13	7	13	y	0.20	4	16	4	16	y	0.14	5	31	5	31	n	0.29	18	44	18	44	n	0.21	8	30	8	30	n	0.22	13	45	13	45	y	ENSMUSG00000112796.2	Gm40770	chr10	lncRNA	predicted gene, 40770
novel_NIR_1451	chr10	117246099;117248655	117248519;117249631	-	117246099	117249631	cassetteExon	ENSMUST00000220040.2	novel	0.00	0.0	18	0;0	18	n	0.06	1.5	25	3;0	25	n	0.00	0.0	1	0;0	1	n	0.11	2.5	21	5;0	21	n	0.16	2.5	13	5;0	13	n	1.00	0.5	0	1;0	0	n	0.21	3.5	13	7;0	13	n	0.11	2.0	16	4;0	16	n	0.07	2.5	31	5;0	31	n	0.19	10.0	44	18;2	44	y	0.13	4.5	30	8;1	30	n	0.13	6.5	45	13;0	45	n	ENSMUSG00000112796.2	Gm40770	chr10	lncRNA	predicted gene, 40770
novel_NIR_1452	chr10	117246206	117249631	-	117246099	117249631	A3SS	ENSMUST00000220040.2	novel	0.36	10	18	10	18	y	0.22	7	25	7	25	y	0.00	0	1	0	1	n	0.19	5	21	5	21	y	0.00	0	13	0	13	n	1.00	1	0	1	0	n	0.19	3	13	3	13	y	0.00	0	16	0	16	n	0.23	9	31	9	31	y	0.06	3	44	3	44	n	0.03	1	30	1	30	n	0.06	3	45	3	45	n	ENSMUSG00000112796.2	Gm40770	chr10	lncRNA	predicted gene, 40770
novel_NIR_1453	chr10	118554607	118574321	-	118554607	118554796	5pMXE	ENSMUST00000219645.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000112535.2	Gm47425	chr10	lncRNA	predicted gene, 47425
novel_NIR_1454	chr10	120038100	120038418	+	120038100	120038853	A3SS	ENSMUST00000156247.2	novel	0.67	4	2	4	2	y	0.88	7	1	7	1	y	0.46	11	13	11	13	y	0.60	3	2	3	2	y	0.57	8	6	8	6	y	0.56	5	4	5	4	y	0.44	4	5	4	5	y	0.81	13	3	13	3	y	1.00	3	0	3	0	y	0.50	3	3	3	3	y	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000020225.11	Tmbim4	chr10	protein_coding	transmembrane BAX inhibitor motif containing 4
novel_NIR_1455	chr10	120051554	120052277	+	120051554	120056656	A3SS	ENSMUST00000141206.8	novel	-	-	-	-	-	-	0.50	3	3	3	3	y	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.12	1	7	1	7	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.40	2	3	2	3	y	ENSMUSG00000020225.11	Tmbim4	chr10	protein_coding	transmembrane BAX inhibitor motif containing 4
novel_NIR_1456	chr10	120066974	120067108	+	120066467	120067108	A5SS	ENSMUST00000220107.2	novel	0.60	3	2	3	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000020224.16	Llph	chr10	protein_coding	LLP homolog, long-term synaptic facilitation (Aplysia)
novel_NIR_1457	chr10	121103529;121107371	121107312;121107900	-	121103529	121107900	cassetteExon	ENSMUST00000064107.7	novel	1.00	2.0	0	3;1	0	n	1.00	7.0	0	6;8	0	y	1.00	6.0	0	5;7	0	y	0.73	13.5	5	15;12	5	y	0.87	13.0	2	17;9	2	y	1.00	3.0	0	4;2	0	y	1.00	7.0	0	6;8	0	y	1.00	7.5	0	5;10	0	y	1.00	12.0	0	12;12	0	y	1.00	13.0	0	15;11	0	y	1.00	4.0	0	4;4	0	y	0.88	14.5	2	16;13	2	y	ENSMUSG00000052302.7	Tbc1d30	chr10	protein_coding	TBC1 domain family, member 30
novel_NIR_1458	chr10	121132765	121133039	-	121132765	121137842	A5SS	ENSMUST00000064107.7	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.54	7	6	7	6	y	0.42	5	7	5	7	y	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	0.75	3	1	3	1	y	0.44	4	5	4	5	y	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000052302.7	Tbc1d30	chr10	protein_coding	TBC1 domain family, member 30
novel_NIR_1459	chr10	121132765	121133166	-	121132765	121137842	A5SS	ENSMUST00000064107.7	novel	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.12	1	7	1	7	n	1.00	1	0	1	0	n	0.67	2	1	2	1	y	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.00	0	5	0	5	n	1.00	2	0	2	0	y	0.00	0	5	0	5	n	ENSMUSG00000052302.7	Tbc1d30	chr10	protein_coding	TBC1 domain family, member 30
novel_NIR_1460	chr10	121201575	121207049	+	121206323	121207049	A5SS&ES	ENSMUST00000219851.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.25	1	3	1	3	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.14	1	6	1	6	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000034707.8	Gns	chr10	protein_coding	glucosamine (N-acetyl)-6-sulfatase
novel_NIR_1461	chr10	121253097	121311434	-	121253097	121297815	5pMXE	ENSMUST00000219500.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000025795.9	Rassf3	chr10	protein_coding	Ras association (RalGDS/AF-6) domain family member 3
novel_NIR_1462	chr10	121346530	121355742	+	121346530	121361539	A3SS	ENSMUST00000220364.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.60	3	2	3	2	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000112527.2	Gm35696	chr10	lncRNA	predicted gene, 35696
novel_NIR_1463	chr10	121346530;121355853	121355742;121358702	+	121346530	121358702	cassetteExon	ENSMUST00000218852.2	novel	0.09	0.5	5	1;0	5	n	0.00	0.0	9	0;0	9	n	0.04	1.5	41	3;0	41	n	0.02	0.5	30	0;1	30	n	0.00	0.0	14	0;0	14	n	0.00	0.0	15	0;0	15	n	0.00	0.0	31	0;0	31	n	0.00	0.0	21	0;0	21	n	0.02	0.5	21	1;0	21	n	0.07	2.0	27	1;3	27	n	0.17	4.0	19	3;5	19	y	0.00	0.0	30	0;0	30	n	ENSMUSG00000112527.2	Gm35696	chr10	lncRNA	predicted gene, 35696
novel_NIR_1464	chr10	121346530;121358873	121358673;121361539	+	121346530	121361539	cassetteExon	ENSMUST00000220364.2	novel	1.00	1.5	0	0;3	0	n	-	-	-	-	-	-	0.73	5.5	2	0;11	2	n	0.00	0.0	2	0;0	2	n	1.00	1.5	0	1;2	0	n	1.00	3.5	0	1;6	0	n	1.00	0.5	0	1;0	0	n	1.00	3.0	0	0;6	0	n	1.00	2.0	0	0;4	0	n	1.00	3.0	0	0;6	0	n	1.00	2.5	0	3;2	0	y	1.00	0.5	0	0;1	0	n	ENSMUSG00000112527.2	Gm35696	chr10	lncRNA	predicted gene, 35696
novel_NIR_1465	chr10	121358873	121361539	+	121346530	121361539	A5SS	ENSMUST00000220364.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	0.85	11	2	11	2	y	0.00	0	2	0	2	n	1.00	2	0	2	0	n	1.00	6	0	6	0	n	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	4	0	4	0	y	1.00	6	0	6	0	y	1.00	2	0	2	0	n	1.00	1	0	1	0	n	ENSMUSG00000112527.2	Gm35696	chr10	lncRNA	predicted gene, 35696
novel_NIR_1466	chr10	121432235	121435492	-	121429628	121435492	A3SS	ENSMUST00000219334.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.60	3	2	3	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000034667.9	Xpot	chr10	protein_coding	exportin, tRNA (nuclear export receptor for tRNAs)
novel_NIR_1467	chr10	121458896	121462035	-	121458896	121462010	A5SS	ENSMUST00000039810.8	novel	0.24	9	29	9	29	y	0.06	2	33	2	33	n	0.22	14	49	14	49	y	0.11	8	68	8	68	n	0.19	13	56	13	56	y	0.00	0	23	0	23	n	0.20	11	44	11	44	y	0.26	12	34	12	34	y	0.08	3	33	3	33	n	0.33	19	39	19	39	y	0.42	11	15	11	15	y	0.23	9	30	9	30	y	ENSMUSG00000034667.9	Xpot	chr10	protein_coding	exportin, tRNA (nuclear export receptor for tRNAs)
novel_NIR_1468	chr10	121581521	121582846	+	121581521	121586208	A3SS	ENSMUST00000065600.8	novel	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.08	1	12	1	12	n	0.21	3	11	3	11	y	0.06	1	16	1	16	n	0.00	0	8	0	8	n	0.15	3	17	3	17	y	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.08	1	11	1	11	n	0.00	0	4	0	4	n	ENSMUSG00000053684.9	BC048403	chr10	protein_coding	cDNA sequence BC048403
novel_NIR_1469	chr10	121932132	121932253	-	121931999	121932253	A3SS	ENSMUST00000038772.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	8	0	8	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000034620.18	Rxylt1	chr10	protein_coding	ribitol xylosyltransferase 1
novel_NIR_1470	chr10	121932132	121932253	-	121932132	121932805	A5SS	ENSMUST00000135083.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.80	8	2	8	2	y	0.00	0	2	0	2	n	0.33	1	2	1	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000034620.18	Rxylt1	chr10	protein_coding	ribitol xylosyltransferase 1
novel_NIR_1471	chr10	122223125	122224064	+	122223125	122237154	A3SS	ENSMUST00000218971.2	novel	0.70	7	3	7	3	y	0.50	1	1	1	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.83	5	1	5	1	y	0.00	0	3	0	3	n	0.08	1	11	1	11	n	1.00	3	0	3	0	y	0.17	1	5	1	5	n	0.38	6	10	6	10	y	1.00	5	0	5	0	y	0.67	4	2	4	2	y	ENSMUSG00000112774.2	Gm36041	chr10	lncRNA	predicted gene, 36041
novel_NIR_1472	chr10	122223125	122237293	+	122223125	122237154	A3SS	ENSMUST00000218971.2	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	1.00	4	0	4	0	y	0.00	0	5	0	5	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000112774.2	Gm36041	chr10	lncRNA	predicted gene, 36041
novel_NIR_1473	chr10	122237327	122239631	+	122237327	122240299	A3SS	ENSMUST00000218971.2	novel	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.12	1	7	1	7	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000112774.2	Gm36041	chr10	lncRNA	predicted gene, 36041
novel_NIR_1474	chr10	122240340	122266563	+	122240340	122266655	A3SS	ENSMUST00000218971.2	novel	0.33	1	2	1	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.56	5	4	5	4	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.11	1	8	1	8	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000112774.2	Gm36041	chr10	lncRNA	predicted gene, 36041
novel_NIR_1475	chr10	122266782	122269503	+	122266782;122267230	122267095;122269503	ES	ENSMUST00000218971.2	novel	0.00	0	2.5	0	1;4	n	0.00	0	1.0	0	1;1	n	0.00	0	1.0	0	2;0	n	-	-	-	-	-	-	0.27	2	5.5	2	5;6	y	0.00	0	1.0	0	0;2	n	0.00	0	6.5	0	5;8	n	0.00	0	0.5	0	1;0	n	0.00	0	5.5	0	8;3	n	0.00	0	7.5	0	8;7	n	0.40	1	1.5	1	2;1	n	0.00	0	5.5	0	9;2	n	ENSMUSG00000112774.2	Gm36041	chr10	lncRNA	predicted gene, 36041
novel_NIR_1476	chr10	122866194	122866945	-	122866548	122866945	3pMXE	ENSMUST00000218253.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000034602.16	Mon2	chr10	protein_coding	MON2 homolog, regulator of endosome to Golgi trafficking
novel_NIR_1477	chr10	122888217	122894078	-	122888217	122895093	A5SS	ENSMUST00000073792.11	novel	0.16	3	16	3	16	y	0.00	0	14	0	14	n	0.02	1	52	1	52	n	0.05	1	20	1	20	n	0.04	2	48	2	48	n	0.07	2	27	2	27	n	0.04	1	24	1	24	n	0.00	0	38	0	38	n	0.10	2	19	2	19	n	0.05	2	37	2	37	n	0.00	0	13	0	13	n	0.06	2	33	2	33	n	ENSMUSG00000034602.16	Mon2	chr10	protein_coding	MON2 homolog, regulator of endosome to Golgi trafficking
novel_NIR_1478	chr10	122894815	122895093	-	122888217	122895093	A3SS	ENSMUST00000073792.11	novel	0.20	4	16	4	16	y	0.26	5	14	5	14	y	0.07	4	52	4	52	n	0.17	4	20	4	20	n	0.04	2	48	2	48	n	0.10	3	27	3	27	n	0.04	1	24	1	24	n	0.00	0	38	0	38	n	0.10	2	19	2	19	n	0.21	10	37	10	37	n	0.13	2	13	2	13	n	0.08	3	33	3	33	n	ENSMUSG00000034602.16	Mon2	chr10	protein_coding	MON2 homolog, regulator of endosome to Golgi trafficking
novel_NIR_1479	chr10	122969034	123004132	-	122989032	123004132	3pMXE	ENSMUST00000217985.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020124.11	Usp15	chr10	protein_coding	ubiquitin specific peptidase 15
novel_NIR_1480	chr10	122982843	122986867	-	122982843	122983152	5pMXE	ENSMUST00000219413.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020124.11	Usp15	chr10	protein_coding	ubiquitin specific peptidase 15
novel_NIR_1481	chr10	122982843	122986867	-	122982843	122999498	A5SS	ENSMUST00000020334.9	novel	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.07	2	25	2	25	n	0.00	0	23	0	23	n	0.00	0	24	0	24	n	0.18	2	9	2	9	y	0.03	1	31	1	31	n	0.08	1	12	1	12	n	0.00	0	13	0	13	n	0.00	0	18	0	18	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	ENSMUSG00000020124.11	Usp15	chr10	protein_coding	ubiquitin specific peptidase 15
novel_NIR_1482	chr10	122982843	123004132	-	122982843	122983152	5pMXE	ENSMUST00000219413.2	novel	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000020124.11	Usp15	chr10	protein_coding	ubiquitin specific peptidase 15
novel_NIR_1483	chr10	122982843	123004132	-	122982843;122999559	122999498;123004132	ES	ENSMUST00000020334.9	novel	0.11	2	17.0	2	14;20	n	0.22	3	10.5	3	6;15	y	0.00	0	31.5	0	25;38	n	0.00	0	28.0	0	23;33	n	0.00	0	36.5	0	24;49	n	0.00	0	20.0	0	9;31	n	0.06	2	31.5	2	31;32	n	0.00	0	19.0	0	12;26	n	0.00	0	15.0	0	13;17	n	0.00	0	32.0	0	18;46	n	0.00	0	16.0	0	12;20	n	0.04	1	25.0	1	14;36	n	ENSMUSG00000020124.11	Usp15	chr10	protein_coding	ubiquitin specific peptidase 15
novel_NIR_1484	chr10	122982843	123004132	-	122989032	123004132	3pMXE	ENSMUST00000217985.2	novel	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000020124.11	Usp15	chr10	protein_coding	ubiquitin specific peptidase 15
novel_NIR_1485	chr10	122982843	123004132	-	122999559	123004132	3pMXE	ENSMUST00000219010.2	novel	0.09	2	20	2	20	n	0.17	3	15	3	15	y	0.00	0	38	0	38	n	0.00	0	33	0	33	n	0.00	0	49	0	49	n	0.00	0	31	0	31	n	0.06	2	32	2	32	n	0.00	0	26	0	26	n	0.00	0	17	0	17	n	0.00	0	46	0	46	n	0.00	0	20	0	20	n	0.03	1	36	1	36	n	ENSMUSG00000020124.11	Usp15	chr10	protein_coding	ubiquitin specific peptidase 15
novel_NIR_1486	chr10	12492555	12496935	-	12413957	12496935	A3SS	ENSMUST00000076817.5	novel	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	24	0	24	n	0.00	0	26	0	26	n	0.00	0	32	0	32	n	0.15	2	11	2	11	y	0.00	0	19	0	19	n	0.00	0	30	0	30	n	0.00	0	14	0	14	n	0.00	0	19	0	19	n	0.00	0	10	0	10	n	0.00	0	20	0	20	n	ENSMUSG00000019820.12	Utrn	chr10	protein_coding	utrophin
novel_NIR_1487	chr10	125130713	125164204	-	125130713	125134491	A5SS&ES	ENSMUST00000210780.2	novel	0.33	1	2	1	2	n	0.67	2	1	2	1	y	0.20	1	4	1	4	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	5	0	5	0	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	ENSMUSG00000020102.16	Slc16a7	chr10	protein_coding	solute carrier family 16 (monocarboxylic acid transporters), member 7
novel_NIR_1488	chr10	125137950	125160131	-	125137950	125144583	5pMXE	ENSMUST00000105257.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020102.16	Slc16a7	chr10	protein_coding	solute carrier family 16 (monocarboxylic acid transporters), member 7
novel_NIR_1489	chr10	125137950	125160131	-	125137950	125175008	A5SS	ENSMUST00000210780.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020102.16	Slc16a7	chr10	protein_coding	solute carrier family 16 (monocarboxylic acid transporters), member 7
novel_NIR_1490	chr10	12516788	12518913	-	12516788	12519147	A5SS	ENSMUST00000076817.5	novel	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	29	0	29	n	0.20	2	8	2	8	y	0.00	0	30	0	30	n	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.00	0	19	0	19	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.00	0	17	0	17	n	0.00	0	23	0	23	n	ENSMUSG00000019820.12	Utrn	chr10	protein_coding	utrophin
novel_NIR_1491	chr10	125808336	125816938	+	125808336	125830287	A3SS	ENSMUST00000217813.2	novel	0.00	0	12	0	12	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.17	2	10	2	10	y	0.00	0	8	0	8	n	0.11	1	8	1	8	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	ENSMUSG00000020105.10	Lrig3	chr10	protein_coding	leucine-rich repeats and immunoglobulin-like domains 3
novel_NIR_1492	chr10	126727664	126730094	-	126727592	126730094	A3SS	ENSMUST00000026504.13	novel	0.00	0	17	0	17	n	0.05	1	19	1	19	n	0.14	1	6	1	6	n	0.00	0	25	0	25	n	0.00	0	22	0	22	n	0.57	4	3	4	3	y	0.06	2	31	2	31	n	0.00	0	1	0	1	n	0.00	0	20	0	20	n	0.13	5	33	5	33	n	0.04	1	22	1	22	n	0.00	0	39	0	39	n	ENSMUSG00000025436.13	Atp23	chr10	protein_coding	ATP23 metallopeptidase and ATP synthase assembly factor homolog
novel_NIR_1493	chr10	126866505	126876857	-	126869183	126876857	3pMXE	ENSMUST00000116231.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000080115.4	Eef1akmt3	chr10	protein_coding	EEF1A lysine methyltransferase 3
novel_NIR_1494	chr10	126866505	126876912	-	126866505	126866613	5pMXE	ENSMUST00000152054.8	novel	0.00	0	48	0	48	n	0.00	0	38	0	38	n	0.15	4	23	4	23	y	0.00	0	42	0	42	n	0.00	0	42	0	42	n	0.00	0	28	0	28	n	0.00	0	38	0	38	n	0.00	0	29	0	29	n	0.00	0	32	0	32	n	0.00	0	53	0	53	n	0.00	0	27	0	27	n	0.00	0	37	0	37	n	ENSMUSG00000040521.12	Tsfm	chr10	protein_coding	Ts translation elongation factor, mitochondrial
novel_NIR_1495	chr10	126876968	126877576	-	126876968	126877087	5pMXE	ENSMUST00000116231.4	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.10	1	9	1	9	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.22	2	7	2	7	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000080115.4	Eef1akmt3	chr10	protein_coding	EEF1A lysine methyltransferase 3
novel_NIR_1496	chr10	126877590	126877771	+	126877590	126878929	A3SS	ENSMUST00000152960.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.71	5	2	5	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	3	0	3	0	y	0.50	2	2	2	2	y	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000006732.15	Mettl1	chr10	protein_coding	methyltransferase like 1
novel_NIR_1497	chr10	126905382	126905815	-	126905382	126905676	A5SS	ENSMUST00000218603.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000006736.10	Tspan31	chr10	protein_coding	tetraspanin 31
novel_NIR_1498	chr10	126905382	126906758	-	126905382	126905676	5pMXE	ENSMUST00000218603.2	novel	0.00	0	1	0	1	n	0.82	9	2	9	2	y	-	-	-	-	-	-	1.00	7	0	7	0	y	1.00	5	0	5	0	y	0.00	0	1	0	1	n	0.29	2	5	2	5	y	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	5	0	5	0	y	ENSMUSG00000006736.10	Tspan31	chr10	protein_coding	tetraspanin 31
novel_NIR_1499	chr10	126905382	126915536	-	126905382	126905676	5pMXE	ENSMUST00000218603.2	novel	0.75	3	1	3	1	y	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	9	0	9	0	y	1.00	10	0	10	0	y	0.00	0	1	0	1	n	0.64	9	5	9	5	y	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.60	3	2	3	2	y	1.00	5	0	5	0	y	ENSMUSG00000006736.10	Tspan31	chr10	protein_coding	tetraspanin 31
novel_NIR_1500	chr10	126921529	126921765	+	126921529	126922796	A3SS	ENSMUST00000239120.2	novel	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000025422.11	Agap2	chr10	protein_coding	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2
novel_NIR_1501	chr10	127096003	127098637	-	127084148	127098637	A3SS	ENSMUST00000099172.5	novel	1.00	8	0	8	0	y	1.00	14	0	14	0	y	1.00	13	0	13	0	y	1.00	14	0	14	0	y	1.00	14	0	14	0	y	1.00	8	0	8	0	y	1.00	24	0	24	0	y	1.00	2	0	2	0	y	1.00	9	0	9	0	y	1.00	29	0	29	0	y	1.00	17	0	17	0	y	1.00	18	0	18	0	y	ENSMUSG00000074657.6	Kif5a	chr10	protein_coding	kinesin family member 5A
novel_NIR_1502	chr10	127118178	127118284	-	127118046	127118284	A3SS	ENSMUST00000136169.8	novel	1.00	13	0	13	0	y	1.00	13	0	13	0	y	1.00	11	0	11	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	12	0	12	0	y	1.00	7	0	7	0	y	1.00	7	0	7	0	y	1.00	4	0	4	0	y	1.00	6	0	6	0	y	1.00	3	0	3	0	y	1.00	5	0	5	0	y	ENSMUSG00000025409.15	Mbd6	chr10	protein_coding	methyl-CpG binding domain protein 6
novel_NIR_1503	chr10	127123461	127126432	-	127125820	127126432	3pMXE	ENSMUST00000174141.8	novel	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.29	2	5	2	5	y	0.00	0	1	0	1	n	0.00	0	7	0	7	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	ENSMUSG00000092384.8	Gm4189	chr10	lncRNA	predicted gene 4189
novel_NIR_1504	chr10	127123559	127123672	-	127123559	127124578	A5SS	ENSMUST00000026476.13	novel	0.04	1	26	1	26	n	0.00	0	13	0	13	n	0.03	1	30	1	30	n	0.10	2	18	2	18	n	0.15	5	29	5	29	y	0.17	3	15	3	15	y	0.00	0	25	0	25	n	0.14	2	12	2	12	n	0.00	0	10	0	10	n	0.00	0	29	0	29	n	0.00	0	19	0	19	n	0.03	1	31	1	31	n	ENSMUSG00000025409.15	Mbd6	chr10	protein_coding	methyl-CpG binding domain protein 6
novel_NIR_1505	chr10	127123559	127124219	-	127123559	127124578	A5SS	ENSMUST00000026476.13	novel	0.13	4	26	4	26	n	0.00	0	13	0	13	n	0.19	7	30	7	30	y	0.31	8	18	8	18	y	0.15	5	29	5	29	y	0.12	2	15	2	15	n	0.11	3	25	3	25	n	0.00	0	12	0	12	n	0.23	3	10	3	10	y	0.03	1	29	1	29	n	0.05	1	19	1	19	n	0.00	0	31	0	31	n	ENSMUSG00000025409.15	Mbd6	chr10	protein_coding	methyl-CpG binding domain protein 6
novel_NIR_1506	chr10	127123559	127124224	-	127123559	127124578	A5SS	ENSMUST00000026476.13	novel	0.04	1	26	1	26	n	0.19	3	13	3	13	y	0.23	9	30	9	30	y	0.00	0	18	0	18	n	0.09	3	29	3	29	n	0.21	4	15	4	15	y	0.31	11	25	11	25	y	0.33	6	12	6	12	y	0.17	2	10	2	10	y	0.12	4	29	4	29	n	0.17	4	19	4	19	y	0.16	6	31	6	31	y	ENSMUSG00000025409.15	Mbd6	chr10	protein_coding	methyl-CpG binding domain protein 6
novel_NIR_1507	chr10	127125824	127126432	-	127125820	127126432	A3SS	ENSMUST00000174141.8	novel	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.22	2	7	2	7	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	ENSMUSG00000092384.8	Gm4189	chr10	lncRNA	predicted gene 4189
novel_NIR_1508	chr10	127161499	127161642	+	127161499	127161713	A3SS	ENSMUST00000219511.2	novel	0.50	4	4	4	4	y	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000040345.11	Arhgap9	chr10	protein_coding	Rho GTPase activating protein 9
novel_NIR_1509	chr10	127177187	127177997	-	127177187	127177428	5pMXE	ENSMUST00000026474.5	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025407.8	Gli1	chr10	protein_coding	GLI-Kruppel family member GLI1
novel_NIR_1510	chr10	127204119	127205557	+	127168586	127205557	A5SS	ENSMUST00000219640.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000112426.2	Gm47200	chr10	lncRNA	predicted gene, 47200
novel_NIR_1511	chr10	127205173	127205557	+	127168586	127205557	A5SS	ENSMUST00000219640.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000112426.2	Gm47200	chr10	lncRNA	predicted gene, 47200
novel_NIR_1512	chr10	127205626	127206008	+	127205583	127206008	A5SS	ENSMUST00000219640.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.17	1	5	1	5	n	-	-	-	-	-	-	0.50	2	2	2	2	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.67	4	2	4	2	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000112426.2	Gm47200	chr10	lncRNA	predicted gene, 47200
novel_NIR_1513	chr10	12721940	12737312	-	12641076	12737312	A3SS	ENSMUST00000076817.5	novel	0.25	1	3	1	3	n	0.50	2	2	2	2	y	0.44	4	5	4	5	y	1.00	1	0	1	0	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.13	2	13	2	13	n	0.57	4	3	4	3	y	0.42	5	7	5	7	y	0.25	1	3	1	3	n	0.36	4	7	4	7	y	ENSMUSG00000019820.12	Utrn	chr10	protein_coding	utrophin
novel_NIR_1514	chr10	127226296	127280145	+	127256305	127280145	5pMXE	ENSMUST00000171434.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	ENSMUSG00000025404.16	R3hdm2	chr10	protein_coding	R3H domain containing 2
novel_NIR_1515	chr10	127226296	127280145	+	127257217	127280145	5pMXE	ENSMUST00000168780.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	ENSMUSG00000025404.16	R3hdm2	chr10	protein_coding	R3H domain containing 2
novel_NIR_1516	chr10	127226296	127280145	+	127257235	127280145	5pMXE	ENSMUST00000064793.13	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	ENSMUSG00000025404.16	R3hdm2	chr10	protein_coding	R3H domain containing 2
novel_NIR_1517	chr10	127236062	127279000	+	127236062	127254380	A3SS&ES	ENSMUST00000111628.9	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	5	0	5	0	y	ENSMUSG00000025404.16	R3hdm2	chr10	protein_coding	R3H domain containing 2
novel_NIR_1518	chr10	127295444	127297979	+	127295444	127298075	A3SS	ENSMUST00000165440.8	novel	0.25	2	6	2	6	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.50	3	3	3	3	y	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	9	0	9	n	ENSMUSG00000025404.16	R3hdm2	chr10	protein_coding	R3H domain containing 2
novel_NIR_1519	chr10	127323744	127328184	+	127323744	127328459	A3SS	ENSMUST00000168079.2	novel	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	0.25	2	6	2	6	y	ENSMUSG00000025404.16	R3hdm2	chr10	protein_coding	R3H domain containing 2
novel_NIR_1520	chr10	127323744	127328500	+	127323744	127328459	A3SS	ENSMUST00000168079.2	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.30	3	7	3	7	y	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.67	4	2	4	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.29	2	5	2	5	y	0.45	5	6	5	6	y	ENSMUSG00000025404.16	R3hdm2	chr10	protein_coding	R3H domain containing 2
novel_NIR_1521	chr10	127333128	127333416	+	127333128	127334627	A3SS	ENSMUST00000171426.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025404.16	R3hdm2	chr10	protein_coding	R3H domain containing 2
novel_NIR_1522	chr10	12737449	12744499	-	12737449	12743837	5pMXE	ENSMUST00000219584.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000019820.12	Utrn	chr10	protein_coding	utrophin
novel_NIR_1523	chr10	12737449	12744499	-	12737479	12744499	A3SS	ENSMUST00000218635.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.21	3	11	3	11	y	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.12	1	7	1	7	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000019820.12	Utrn	chr10	protein_coding	utrophin
novel_NIR_1524	chr10	127440905	127441278	-	127436770	127441278	A3SS	ENSMUST00000118455.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000040249.16	Lrp1	chr10	protein_coding	low density lipoprotein receptor-related protein 1
novel_NIR_1525	chr10	127497648	127497992	-	127497648	127498600	A5SS	ENSMUST00000026469.9	novel	0.14	4	25	4	25	n	0.05	1	21	1	21	n	0.03	1	32	1	32	n	0.00	0	21	0	21	n	0.17	9	45	9	45	y	0.25	5	15	5	15	y	0.11	3	25	3	25	n	0.00	0	18	0	18	n	0.26	9	26	9	26	y	0.12	2	14	2	14	n	0.06	2	33	2	33	n	0.05	3	61	3	61	n	ENSMUSG00000025402.13	Nab2	chr10	protein_coding	Ngfi-A binding protein 2
novel_NIR_1526	chr10	127497648	127497992	-	127497648	127499001	A5SS	ENSMUST00000099157.4	novel	0.40	4	6	4	6	y	0.09	1	10	1	10	n	0.06	1	15	1	15	n	0.00	0	10	0	10	n	0.27	9	24	9	24	y	0.83	5	1	5	1	y	0.17	3	15	3	15	y	0.00	0	9	0	9	n	0.43	9	12	9	12	y	0.12	2	14	2	14	n	0.67	2	1	2	1	y	0.15	3	17	3	17	y	ENSMUSG00000025402.13	Nab2	chr10	protein_coding	Ngfi-A binding protein 2
novel_NIR_1527	chr10	127497648	127498156	-	127497648	127498600	A5SS	ENSMUST00000026469.9	novel	0.00	0	25	0	25	n	0.00	0	21	0	21	n	0.00	0	32	0	32	n	0.00	0	21	0	21	n	0.00	0	45	0	45	n	0.00	0	15	0	15	n	0.00	0	25	0	25	n	0.00	0	18	0	18	n	0.00	0	26	0	26	n	0.18	3	14	3	14	y	0.00	0	33	0	33	n	0.00	0	61	0	61	n	ENSMUSG00000025402.13	Nab2	chr10	protein_coding	Ngfi-A binding protein 2
novel_NIR_1528	chr10	127497648	127498156	-	127497648	127499001	A5SS	ENSMUST00000099157.4	novel	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	24	0	24	n	0.00	0	1	0	1	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.18	3	14	3	14	y	0.00	0	1	0	1	n	0.00	0	17	0	17	n	ENSMUSG00000025402.13	Nab2	chr10	protein_coding	Ngfi-A binding protein 2
novel_NIR_1529	chr10	127501007	127502107	-	127501007	127501165	5pMXE	ENSMUST00000128780.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000025402.13	Nab2	chr10	protein_coding	Ngfi-A binding protein 2
novel_NIR_1530	chr10	127503880	127504287	+	127502987	127504287	A5SS	ENSMUST00000133505.2	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000040195.12	Nemp1	chr10	protein_coding	nuclear envelope integral membrane protein 1
novel_NIR_1531	chr10	127503880	127504287	+	127503252	127504287	A5SS	ENSMUST00000124388.2	novel	0.38	3	5	3	5	y	0.05	1	18	1	18	n	0.08	1	11	1	11	n	0.04	1	25	1	25	n	0.00	0	30	0	30	n	0.00	0	16	0	16	n	0.05	2	39	2	39	n	0.00	0	18	0	18	n	0.10	2	19	2	19	n	0.03	1	35	1	35	n	0.05	1	18	1	18	n	0.00	0	25	0	25	n	ENSMUSG00000040195.12	Nemp1	chr10	protein_coding	nuclear envelope integral membrane protein 1
novel_NIR_1532	chr10	127507733	127507991	-	127507733	127508419	A5SS	ENSMUST00000155550.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.50	3	3	3	3	y	1.00	1	0	1	0	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	ENSMUSG00000087163.2	Gm16230	chr10	lncRNA	predicted gene 16230
novel_NIR_1533	chr10	127508056	127508419	-	127507733	127508419	A3SS	ENSMUST00000155550.2	novel	0.50	1	1	1	1	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.80	4	1	4	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000087163.2	Gm16230	chr10	lncRNA	predicted gene 16230
novel_NIR_1534	chr10	127508237	127508419	-	127507733	127508419	A3SS	ENSMUST00000155550.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.50	3	3	3	3	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000087163.2	Gm16230	chr10	lncRNA	predicted gene 16230
novel_NIR_1535	chr10	127508498	127512540	-	127508498;127510851	127510726;127512540	ES	ENSMUST00000155550.2	novel	0.62	4	2.5	4	3;2	y	0.00	0	2.5	0	1;4	n	0.00	0	1.5	0	2;1	n	0.33	1	2.0	1	1;3	n	0.29	2	5.0	2	3;7	y	0.00	0	1.0	0	1;1	n	0.36	4	7.0	4	6;8	y	0.67	2	1.0	2	0;2	y	0.50	1	1.0	1	0;2	n	0.00	0	6.5	0	4;9	n	0.29	1	2.5	1	3;2	n	0.67	3	1.5	3	1;2	y	ENSMUSG00000087163.2	Gm16230	chr10	lncRNA	predicted gene 16230
novel_NIR_1536	chr10	127612666	127660369	+	127612666	127618035	3pMXE	ENSMUST00000136223.2	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.30	3	7	3	7	y	0.00	0	13	0	13	n	0.00	0	2	0	2	n	0.00	0	15	0	15	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	7	0	7	n	-	-	-	-	-	-	ENSMUSG00000056148.9	Rdh9	chr10	protein_coding	retinol dehydrogenase 9
novel_NIR_1537	chr10	127637350	127648655	+	127637135	127648655	A5SS	ENSMUST00000125163.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000069456.5	Rdh16	chr10	protein_coding	retinol dehydrogenase 16
novel_NIR_1538	chr10	127637350	127648655	+	127637379	127648655	A5SS	ENSMUST00000155739.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.22	2	7	2	7	y	0.00	0	5	0	5	n	ENSMUSG00000069456.5	Rdh16	chr10	protein_coding	retinol dehydrogenase 16
novel_NIR_1539	chr10	127637379	127646376	+	127637379	127648655	A3SS	ENSMUST00000155739.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.25	2	6	2	6	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	1.00	2	0	2	0	y	0.25	1	3	1	3	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	ENSMUSG00000069456.5	Rdh16	chr10	protein_coding	retinol dehydrogenase 16
novel_NIR_1540	chr10	127648165	127648655	+	127637135	127648655	A5SS	ENSMUST00000125163.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000069456.5	Rdh16	chr10	protein_coding	retinol dehydrogenase 16
novel_NIR_1541	chr10	127648165	127648655	+	127637379	127648655	A5SS	ENSMUST00000155739.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.30	3	7	3	7	y	0.00	0	5	0	5	n	ENSMUSG00000069456.5	Rdh16	chr10	protein_coding	retinol dehydrogenase 16
novel_NIR_1542	chr10	127648818	127649197	+	127648818	127678981	A3SS	ENSMUST00000125163.2	novel	0.00	0	1	0	1	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000069456.5	Rdh16	chr10	protein_coding	retinol dehydrogenase 16
novel_NIR_1543	chr10	127648818	127650760	+	127648818	127678981	A3SS	ENSMUST00000125163.2	novel	0.80	4	1	4	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000069456.5	Rdh16	chr10	protein_coding	retinol dehydrogenase 16
novel_NIR_1544	chr10	127738432	127739447	+	127739342	127739447	5pMXE	ENSMUST00000149849.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	ENSMUSG00000040127.14	Sdr9c7	chr10	protein_coding	4short chain dehydrogenase/reductase family 9C, member 7
novel_NIR_1545	chr10	127833893	127843352	-	127833893;127836540	127836420;127843352	ES	ENSMUST00000219780.2	novel	0.00	0	22.0	0	17;27	n	0.07	3	38.0	3	21;55	n	0.00	0	2.0	0	3;1	n	0.00	0	25.5	0	24;27	n	0.03	2	60.0	2	43;77	n	0.22	2	7.0	2	6;8	y	0.00	0	52.0	0	45;59	n	0.00	0	28.0	0	24;32	n	0.00	0	44.0	0	27;61	n	0.02	1	53.0	1	31;75	n	0.02	1	55.5	1	41;70	n	0.00	0	72.5	0	51;94	n	ENSMUSG00000025396.8	Hsd17b6	chr10	protein_coding	hydroxysteroid (17-beta) dehydrogenase 6
novel_NIR_1546	chr10	127836540	127843314	-	127836540	127843352	A5SS	ENSMUST00000219707.2	novel	0.16	5	27	5	27	y	0.18	12	55	12	55	y	0.50	1	1	1	1	n	0.31	12	27	12	27	y	0.10	9	77	9	77	n	0.11	1	8	1	8	n	0.11	7	59	7	59	n	0.11	4	32	4	32	n	0.12	8	61	8	61	n	0.15	13	75	13	75	y	0.10	8	70	8	70	n	0.23	28	94	28	94	y	ENSMUSG00000025396.8	Hsd17b6	chr10	protein_coding	hydroxysteroid (17-beta) dehydrogenase 6
novel_NIR_1547	chr10	127836540	127843314	-	127836545	127843314	A3SS	ENSMUST00000219447.2	novel	1.00	5	0	5	0	y	1.00	12	0	12	0	y	1.00	1	0	1	0	n	1.00	12	0	12	0	y	0.50	9	9	9	9	y	0.25	1	3	1	3	n	0.44	7	9	7	9	y	0.33	4	8	4	8	y	0.80	8	2	8	2	y	0.76	13	4	13	4	y	0.50	8	8	8	8	y	0.80	28	7	28	7	y	ENSMUSG00000025396.8	Hsd17b6	chr10	protein_coding	hydroxysteroid (17-beta) dehydrogenase 6
novel_NIR_1548	chr10	127836545	127843298	-	127836545	127843314	A5SS	ENSMUST00000219447.2	novel	1.00	3	0	3	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.36	5	9	5	9	y	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	8	0	8	n	0.42	5	7	5	7	y	ENSMUSG00000025396.8	Hsd17b6	chr10	protein_coding	hydroxysteroid (17-beta) dehydrogenase 6
novel_NIR_1549	chr10	127851220	127853845	+	127851220;127851990	127851833;127853845	ES	ENSMUST00000178041.8	novel	0.00	0	2.5	0	1;4	n	0.00	0	4.0	0	6;2	n	0.32	3	6.5	3	10;3	y	0.00	0	5.0	0	1;9	n	0.00	0	7.0	0	5;9	n	0.00	0	5.5	0	5;6	n	0.00	0	5.0	0	7;3	n	0.00	0	4.0	0	4;4	n	0.00	0	5.0	0	4;6	n	0.00	0	6.5	0	7;6	n	0.00	0	6.0	0	4;8	n	0.13	1	6.5	1	5;8	n	ENSMUSG00000025395.15	Prim1	chr10	protein_coding	DNA primase, p49 subunit
novel_NIR_1550	chr10	127925027	127925143	+	127925027	127925861	A3SS	ENSMUST00000125992.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000025393.13	Atp5b	chr10	protein_coding	ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit
novel_NIR_1551	chr10	127925027	127925890	+	127925027	127925861	A3SS	ENSMUST00000125992.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000025393.13	Atp5b	chr10	protein_coding	ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit
novel_NIR_1552	chr10	127927645	127932249	+	127927645	127928329	A3SS&ES	ENSMUST00000218772.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	1	0	1	0	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.14	1	6	1	6	n	1.00	4	0	4	0	y	ENSMUSG00000040054.18	Baz2a	chr10	protein_coding	bromodomain adjacent to zinc finger domain, 2A
novel_NIR_1553	chr10	127927645	127932249	+	127927645	127932308	A3SS	ENSMUST00000219082.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.33	4	8	4	8	y	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.25	1	3	1	3	n	0.67	4	2	4	2	y	ENSMUSG00000040054.18	Baz2a	chr10	protein_coding	bromodomain adjacent to zinc finger domain, 2A
novel_NIR_1554	chr10	127927645	127932249	+	127927645	127944763	A3SS	ENSMUST00000238829.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	ENSMUSG00000040054.18	Baz2a	chr10	protein_coding	bromodomain adjacent to zinc finger domain, 2A
novel_NIR_1555	chr10	127932392;127932929	127932804;127944763	+	127932392	127944763	cassetteExon	ENSMUST00000218772.2	novel	0.05	0.5	10	0;1	10	n	0.33	1.5	3	0;3	3	n	0.33	3.0	6	0;6	6	n	0.14	1.0	6	0;2	6	n	0.35	6.5	12	2;11	12	y	0.08	0.5	6	0;1	6	n	0.50	5.0	5	0;10	5	n	0.26	2.5	7	1;4	7	n	0.20	2.0	8	0;4	8	n	0.41	3.5	5	0;7	5	n	0.43	1.5	2	0;3	2	n	0.16	1.5	8	0;3	8	n	ENSMUSG00000040054.18	Baz2a	chr10	protein_coding	bromodomain adjacent to zinc finger domain, 2A
novel_NIR_1556	chr10	127932929	127944763	+	127927645	127944763	A5SS	ENSMUST00000238829.2	novel	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	6	0	6	0	y	1.00	2	0	2	0	y	1.00	11	0	11	0	y	1.00	1	0	1	0	n	1.00	10	0	10	0	y	0.80	4	1	4	1	y	1.00	4	0	4	0	y	1.00	7	0	7	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	ENSMUSG00000040054.18	Baz2a	chr10	protein_coding	bromodomain adjacent to zinc finger domain, 2A
novel_NIR_1557	chr10	127932929	127944763	+	127932392	127944763	A5SS	ENSMUST00000218772.2	novel	0.09	1	10	1	10	n	0.50	3	3	3	3	y	0.50	6	6	6	6	y	0.25	2	6	2	6	y	0.48	11	12	11	12	n	0.14	1	6	1	6	n	0.67	10	5	10	5	y	0.36	4	7	4	7	n	0.33	4	8	4	8	y	0.58	7	5	7	5	y	0.60	3	2	3	2	y	0.27	3	8	3	8	y	ENSMUSG00000040054.18	Baz2a	chr10	protein_coding	bromodomain adjacent to zinc finger domain, 2A
novel_NIR_1558	chr10	127961514	127961890	+	127961514	127961887	A3SS	ENSMUST00000238829.2	novel	0.23	11	36	11	36	y	0.12	3	23	3	23	n	0.16	7	36	7	36	y	0.25	13	38	13	38	y	0.27	18	49	18	49	y	0.25	6	18	6	18	y	0.09	4	40	4	40	n	0.28	7	18	7	18	y	0.05	2	37	2	37	n	0.23	13	44	13	44	y	0.16	5	27	5	27	y	0.00	0	31	0	31	n	ENSMUSG00000040054.18	Baz2a	chr10	protein_coding	bromodomain adjacent to zinc finger domain, 2A
novel_NIR_1559	chr10	128031303	128035051	+	128030715	128035051	A5SS	ENSMUST00000123385.8	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.10	1	9	1	9	n	ENSMUSG00000044005.14	Gls2	chr10	protein_coding	glutaminase 2 (liver, mitochondrial)
novel_NIR_1560	chr10	128031303	128035051	+	128031049	128035051	A5SS	ENSMUST00000123291.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.20	1	4	1	4	n	ENSMUSG00000044005.14	Gls2	chr10	protein_coding	glutaminase 2 (liver, mitochondrial)
novel_NIR_1561	chr10	128035627	128036076	+	128035627	128036013	A3SS	ENSMUST00000159440.8	novel	0.00	0	18	0	18	n	0.00	0	9	0	9	n	0.50	2	2	2	2	y	0.00	0	14	0	14	n	0.00	0	15	0	15	n	0.14	1	6	1	6	n	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	16	0	16	n	0.00	0	15	0	15	n	0.05	1	20	1	20	n	ENSMUSG00000044005.14	Gls2	chr10	protein_coding	glutaminase 2 (liver, mitochondrial)
novel_NIR_1562	chr10	128035627	128036076	+	128035627	128036755	A3SS	ENSMUST00000143827.8	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.14	1	6	1	6	n	ENSMUSG00000044005.14	Gls2	chr10	protein_coding	glutaminase 2 (liver, mitochondrial)
novel_NIR_1563	chr10	128038106	128039692	+	128039608	128039692	5pMXE	ENSMUST00000145591.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000044005.14	Gls2	chr10	protein_coding	glutaminase 2 (liver, mitochondrial)
novel_NIR_1564	chr10	128118683	128118982	+	128118674	128118982	A5SS	ENSMUST00000085708.3	novel	0.09	9	86	9	86	n	0.04	2	54	2	54	n	0.01	1	94	1	94	n	0.06	4	64	4	64	n	0.14	13	81	13	81	n	0.07	3	42	3	42	n	0.06	4	60	4	60	n	0.10	6	55	6	55	n	0.18	7	32	7	32	y	0.10	9	81	9	81	n	0.07	3	42	3	42	n	0.09	6	62	6	62	n	ENSMUSG00000040033.17	Stat2	chr10	protein_coding	signal transducer and activator of transcription 2
novel_NIR_1565	chr10	128140362	128141620	+	128140362	128143988	A3SS	ENSMUST00000219721.2	novel	0.00	0	2	0	2	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000005682.10	Pan2	chr10	protein_coding	PAN2 poly(A) specific ribonuclease subunit
novel_NIR_1566	chr10	128147748	128148747	+	128146669	128148747	A5SS	ENSMUST00000005825.8	novel	0.00	0	18	0	18	n	0.00	0	9	0	9	n	0.05	2	38	2	38	n	0.19	3	13	3	13	y	0.00	0	45	0	45	n	0.00	0	20	0	20	n	0.03	1	29	1	29	n	0.00	0	29	0	29	n	0.00	0	19	0	19	n	0.07	2	28	2	28	n	0.00	0	22	0	22	n	0.00	0	26	0	26	n	ENSMUSG00000005682.10	Pan2	chr10	protein_coding	PAN2 poly(A) specific ribonuclease subunit
novel_NIR_1567	chr10	128149910	128150049	+	128149910	128150052	A3SS	ENSMUST00000005825.8	novel	0.28	5	13	5	13	y	0.12	3	22	3	22	n	0.10	4	35	4	35	n	0.10	2	19	2	19	n	0.14	4	25	4	25	n	0.00	0	14	0	14	n	0.11	3	24	3	24	n	0.29	5	12	5	12	y	0.28	8	21	8	21	y	0.11	3	24	3	24	n	0.05	1	21	1	21	n	0.04	1	25	1	25	n	ENSMUSG00000005682.10	Pan2	chr10	protein_coding	PAN2 poly(A) specific ribonuclease subunit
novel_NIR_1568	chr10	128150197	128150317	+	128150185	128150317	A5SS	ENSMUST00000005825.8	novel	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.26	10	28	10	28	y	0.36	5	9	5	9	y	0.12	3	21	3	21	n	0.20	2	8	2	8	y	0.00	0	13	0	13	n	0.05	1	20	1	20	n	0.18	3	14	3	14	y	0.22	6	21	6	21	y	0.14	3	18	3	18	n	0.32	6	13	6	13	y	ENSMUSG00000005682.10	Pan2	chr10	protein_coding	PAN2 poly(A) specific ribonuclease subunit
novel_NIR_1569	chr10	128151105	128151402	+	128151105	128151356	A3SS	ENSMUST00000005825.8	novel	0.00	0	16	0	16	n	0.00	0	17	0	17	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	17	0	17	n	0.15	2	11	2	11	y	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	ENSMUSG00000005682.10	Pan2	chr10	protein_coding	PAN2 poly(A) specific ribonuclease subunit
novel_NIR_1570	chr10	128151105	128151471	+	128151105	128151356	A3SS	ENSMUST00000005825.8	novel	0.00	0	16	0	16	n	0.15	3	17	3	17	y	0.33	6	12	6	12	y	0.20	2	8	2	8	y	0.26	6	17	6	17	y	0.15	2	11	2	11	y	0.35	6	11	6	11	y	0.08	1	12	1	12	n	0.00	0	9	0	9	n	0.40	8	12	8	12	y	0.47	7	8	7	8	y	0.41	9	13	9	13	y	ENSMUSG00000005682.10	Pan2	chr10	protein_coding	PAN2 poly(A) specific ribonuclease subunit
novel_NIR_1571	chr10	128151105	128151471	+	128151105	128151383	A3SS	ENSMUST00000218315.2	novel	0.00	0	15	0	15	n	0.13	3	20	3	20	n	0.13	6	41	6	41	n	0.09	2	20	2	20	n	0.12	6	42	6	42	n	0.08	2	23	2	23	n	0.14	6	38	6	38	n	0.04	1	26	1	26	n	0.00	0	13	0	13	n	0.27	8	22	8	22	y	0.29	7	17	7	17	y	0.26	9	26	9	26	y	ENSMUSG00000005682.10	Pan2	chr10	protein_coding	PAN2 poly(A) specific ribonuclease subunit
novel_NIR_1572	chr10	128158685	128159199	+	128158399	128159199	A5SS	ENSMUST00000026446.4	novel	0.00	0	23	0	23	n	0.00	0	29	0	29	n	0.15	4	22	4	22	y	0.19	6	26	6	26	y	0.00	0	29	0	29	n	0.00	0	14	0	14	n	0.00	0	36	0	36	n	0.12	2	15	2	15	n	0.00	0	11	0	11	n	0.16	5	26	5	26	y	0.24	6	19	6	19	y	0.00	0	21	0	21	n	ENSMUSG00000025381.4	Cnpy2	chr10	protein_coding	canopy FGF signaling regulator 2
novel_NIR_1573	chr10	128158685	128159199	+	128158587	128159199	A5SS	ENSMUST00000219836.2	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.57	4	3	4	3	y	0.60	6	4	6	4	y	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.25	2	6	2	6	y	-	-	-	-	-	-	0.71	5	2	5	2	y	0.46	6	7	6	7	y	0.00	0	6	0	6	n	ENSMUSG00000025381.4	Cnpy2	chr10	protein_coding	canopy FGF signaling regulator 2
novel_NIR_1574	chr10	128158685	128159199	+	128158931	128159199	5pMXE	ENSMUST00000219199.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.80	4	1	4	1	y	0.60	6	4	6	4	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	ENSMUSG00000025381.4	Cnpy2	chr10	protein_coding	canopy FGF signaling regulator 2
novel_NIR_1575	chr10	128226494	128229459	+	128226494	128244421	A3SS	ENSMUST00000166577.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000014498.10	Ankrd52	chr10	protein_coding	ankyrin repeat domain 52
novel_NIR_1576	chr10	128237701	128244023	-	128237792	128244023	A3SS	ENSMUST00000164199.8	novel	0.00	0	74	0	74	n	0.00	0	72	0	72	n	0.00	0	66	0	66	n	0.00	0	86	0	86	n	0.00	0	98	0	98	n	0.00	0	57	0	57	n	0.00	0	103	0	103	n	0.00	0	57	0	57	n	0.00	0	66	0	66	n	0.00	0	95	0	95	n	0.00	0	101	0	101	n	0.17	19	94	19	94	y	ENSMUSG00000025374.14	Nabp2	chr10	protein_coding	nucleic acid binding protein 2
novel_NIR_1577	chr10	128245217	128247155	-	128245217	128245357	5pMXE	ENSMUST00000171370.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000025374.14	Nabp2	chr10	protein_coding	nucleic acid binding protein 2
novel_NIR_1578	chr10	128245217	128247155	-	128245217	128245376	5pMXE	ENSMUST00000172348.8	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.75	3	1	3	1	y	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000025374.14	Nabp2	chr10	protein_coding	nucleic acid binding protein 2
novel_NIR_1579	chr10	128245217	128247155	-	128245217	128245525	5pMXE	ENSMUST00000166608.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025374.14	Nabp2	chr10	protein_coding	nucleic acid binding protein 2
novel_NIR_1580	chr10	128245217	128247155	-	128245217	128246283	5pMXE	ENSMUST00000164664.8	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.50	3	3	3	3	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	ENSMUSG00000025374.14	Nabp2	chr10	protein_coding	nucleic acid binding protein 2
novel_NIR_1581	chr10	128245217	128247155	-	128245217	128246847	A5SS	ENSMUST00000171494.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025374.14	Nabp2	chr10	protein_coding	nucleic acid binding protein 2
novel_NIR_1582	chr10	128246450	128246847	-	128245217	128246847	A3SS	ENSMUST00000171494.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025374.14	Nabp2	chr10	protein_coding	nucleic acid binding protein 2
novel_NIR_1583	chr10	128271437	128272337	+	128264572	128272337	A5SS	ENSMUST00000217826.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000025373.15	Rnf41	chr10	protein_coding	ring finger protein 41
novel_NIR_1584	chr10	128271437	128272337	+	128268186	128272337	A5SS	ENSMUST00000218371.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000025373.15	Rnf41	chr10	protein_coding	ring finger protein 41
novel_NIR_1585	chr10	128316873	128317955	+	128316873	128317551	A3SS&ES	ENSMUST00000099131.11	novel	0.60	6	4	6	4	y	0.91	10	1	10	1	y	0.76	13	4	13	4	y	0.71	15	6	15	6	y	0.76	28	9	28	9	y	0.33	2	4	2	4	y	0.52	12	11	12	11	y	0.77	17	5	17	5	y	0.56	9	7	9	7	y	0.79	27	7	27	7	y	0.82	14	3	14	3	y	0.85	22	4	22	4	y	ENSMUSG00000025369.16	Smarcc2	chr10	protein_coding	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
novel_NIR_1586	chr10	128316873	128317955	+	128316873	128317952	A3SS	ENSMUST00000026433.9	novel	0.06	6	96	6	96	n	0.12	10	73	10	73	n	0.12	13	94	13	94	n	0.16	15	80	15	80	y	0.14	28	172	28	172	n	0.04	2	48	2	48	n	0.09	12	121	12	121	n	0.17	17	86	17	86	y	0.10	9	83	9	83	n	0.18	27	120	27	120	y	0.14	14	84	14	84	n	0.17	22	110	22	110	y	ENSMUSG00000025369.16	Smarcc2	chr10	protein_coding	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
novel_NIR_1587	chr10	128328271	128328579	-	128328271	128329408	A5SS	ENSMUST00000218713.2	novel	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	39	0	39	n	0.00	0	4	0	4	n	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.21	5	19	5	19	y	0.09	1	10	1	10	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	ENSMUSG00000090841.3	Myl6	chr10	protein_coding	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle
novel_NIR_1588	chr10	128328556	128329408	-	128328271	128329408	A3SS	ENSMUST00000218713.2	novel	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	39	0	39	n	0.00	0	4	0	4	n	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.00	0	19	0	19	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.71	15	6	15	6	y	0.00	0	5	0	5	n	ENSMUSG00000090841.3	Myl6	chr10	protein_coding	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle
novel_NIR_1589	chr10	128328556	128329408	-	128328404	128329408	A3SS	ENSMUST00000220307.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.68	15	7	15	7	y	0.00	0	2	0	2	n	ENSMUSG00000090841.3	Myl6	chr10	protein_coding	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle
novel_NIR_1590	chr10	128328556	128329408	-	128328578	128329408	A3SS	ENSMUST00000217969.2	novel	0.00	0	51	0	51	n	0.00	0	45	0	45	n	0.00	0	68	0	68	n	0.00	0	58	0	58	n	0.00	0	58	0	58	n	0.00	0	37	0	37	n	0.00	0	66	0	66	n	0.00	0	36	0	36	n	0.00	0	40	0	40	n	0.00	0	80	0	80	n	0.25	15	44	15	44	y	0.00	0	63	0	63	n	ENSMUSG00000090841.3	Myl6	chr10	protein_coding	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle
novel_NIR_1591	chr10	128328556	128329408	-	128328914	128329408	A3SS&ES	ENSMUST00000220427.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.94	15	1	15	1	y	0.00	0	2	0	2	n	ENSMUSG00000090841.3	Myl6	chr10	protein_coding	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle
novel_NIR_1592	chr10	128328556	128329408	-	128329222	128329408	A3SS&ES	ENSMUST00000219100.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	15	0	15	0	y	-	-	-	-	-	-	ENSMUSG00000090841.3	Myl6	chr10	protein_coding	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle
novel_NIR_1593	chr10	128328594	128329408	-	128328271	128329408	A3SS	ENSMUST00000218713.2	novel	0.80	20	5	20	5	y	0.00	0	7	0	7	n	0.00	0	39	0	39	n	0.00	0	4	0	4	n	0.80	63	16	63	16	y	0.00	0	8	0	8	n	0.00	0	19	0	19	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.91	59	6	59	6	y	0.00	0	5	0	5	n	ENSMUSG00000090841.3	Myl6	chr10	protein_coding	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle
novel_NIR_1594	chr10	128328594	128329408	-	128328404	128329408	A3SS	ENSMUST00000220307.2	novel	0.87	20	3	20	3	y	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.93	63	5	63	5	y	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.89	59	7	59	7	y	0.00	0	2	0	2	n	ENSMUSG00000090841.3	Myl6	chr10	protein_coding	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle
novel_NIR_1595	chr10	128328594	128329408	-	128328578	128329408	A3SS	ENSMUST00000217969.2	novel	0.28	20	51	20	51	y	0.00	0	45	0	45	n	0.00	0	68	0	68	n	0.00	0	58	0	58	n	0.52	63	58	63	58	y	0.00	0	37	0	37	n	0.00	0	66	0	66	n	0.00	0	36	0	36	n	0.00	0	40	0	40	n	0.00	0	80	0	80	n	0.57	59	44	59	44	y	0.00	0	63	0	63	n	ENSMUSG00000090841.3	Myl6	chr10	protein_coding	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle
novel_NIR_1596	chr10	128328594	128329408	-	128328914	128329408	A3SS&ES	ENSMUST00000220427.2	novel	1.00	20	0	20	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	63	0	63	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.98	59	1	59	1	y	0.00	0	2	0	2	n	ENSMUSG00000090841.3	Myl6	chr10	protein_coding	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle
novel_NIR_1597	chr10	128328594	128329408	-	128329222	128329408	A3SS&ES	ENSMUST00000219100.2	novel	1.00	20	0	20	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	63	0	63	0	y	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	59	0	59	0	y	-	-	-	-	-	-	ENSMUSG00000090841.3	Myl6	chr10	protein_coding	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle
novel_NIR_1598	chr10	128328614	128329203	-	128328614	128328808	A5SS&ES	ENSMUST00000220427.2	novel	1.00	5	0	5	0	y	-	-	-	-	-	-	0.75	3	1	3	1	y	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.55	6	5	6	5	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.75	3	1	3	1	y	ENSMUSG00000090841.3	Myl6	chr10	protein_coding	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle
novel_NIR_1599	chr10	128328614	128329203	-	128328614;128328914	128328808;128329203	ES	ENSMUST00000219100.2	novel	1.00	5	0.0	5	0;0	y	-	-	-	-	-	-	0.86	3	0.5	3	1;0	y	0.57	2	1.5	2	3;0	y	0.00	0	0.5	0	1;0	n	0.00	0	0.5	0	1;0	n	0.71	6	2.5	6	5;0	y	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	0.00	0	1.5	0	3;0	n	0.00	0	1.5	0	3;0	n	0.86	3	0.5	3	1;0	y	ENSMUSG00000090841.3	Myl6	chr10	protein_coding	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle
novel_NIR_1600	chr10	128476130	128476922	-	128476177	128476922	A3SS	ENSMUST00000133342.10	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.75	3	1	3	1	y	ENSMUSG00000002578.19	Ikzf4	chr10	protein_coding	IKAROS family zinc finger 4
novel_NIR_1601	chr10	128522877	128531898	-	128522877	128532055	A5SS	ENSMUST00000000727.4	novel	0.41	16	23	16	23	y	0.17	4	19	4	19	y	0.37	19	32	19	32	y	0.33	21	43	21	43	y	0.30	28	65	28	65	y	0.31	12	27	12	27	y	0.29	20	50	20	50	y	0.31	15	34	15	34	y	0.19	11	47	11	47	y	0.41	44	64	44	64	y	0.20	12	48	12	48	y	0.29	26	64	26	64	y	ENSMUSG00000000711.4	Rab5b	chr10	protein_coding	RAB5B, member RAS oncogene family
novel_NIR_1602	chr10	128539872	128540480	-	128539872	128540357	5pMXE	ENSMUST00000220407.2	novel	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025358.17	Cdk2	chr10	protein_coding	cyclin-dependent kinase 2
novel_NIR_1603	chr10	128539872	128540480	-	128539872	128540581	A5SS	ENSMUST00000026415.9	novel	0.00	0	16	0	16	n	0.17	1	5	1	5	n	0.00	0	21	0	21	n	0.17	2	10	2	10	y	0.00	0	29	0	29	n	0.00	0	17	0	17	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	31	0	31	n	0.00	0	15	0	15	n	0.00	0	16	0	16	n	ENSMUSG00000025358.17	Cdk2	chr10	protein_coding	cyclin-dependent kinase 2
novel_NIR_1604	chr10	128540097	128540328	+	128540097	128542105	A3SS	ENSMUST00000217836.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025359.11	Pmel	chr10	protein_coding	premelanosome protein
novel_NIR_1605	chr10	128583867	128586152	+	128584435	128586152	5pMXE	ENSMUST00000218218.2	novel	-	-	-	-	-	-	0.50	3	3	3	3	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000064030.16	Pym1	chr10	protein_coding	PYM homolog 1, exon junction complex associated factor
novel_NIR_1606	chr10	128601260	128601479	+	128601109	128601479	A5SS	ENSMUST00000163377.10	novel	0.24	6	19	6	19	y	0.10	3	27	3	27	n	0.10	4	36	4	36	n	0.14	3	18	3	18	n	0.10	4	37	4	37	n	0.00	0	24	0	24	n	0.11	5	39	5	39	n	0.11	4	32	4	32	n	0.06	2	31	2	31	n	0.15	7	40	7	40	y	0.04	2	44	2	44	n	0.08	3	36	3	36	n	ENSMUSG00000064030.16	Pym1	chr10	protein_coding	PYM homolog 1, exon junction complex associated factor
novel_NIR_1607	chr10	128634403	128637220	-	128626990	128637220	A3SS	ENSMUST00000219535.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000112429.2	Gm47093	chr10	lncRNA	predicted gene, 47093
novel_NIR_1608	chr10	128639226	128639871	-	128639226	128639446	5pMXE	ENSMUST00000139227.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	3	3	3	3	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000047090.14	Tmem198b	chr10	protein_coding	transmembrane protein 198b
novel_NIR_1609	chr10	128639226	128639871	-	128639226	128640102	A5SS	ENSMUST00000051011.14	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	3	3	3	3	y	-	-	-	-	-	-	0.00	0	5	0	5	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	ENSMUSG00000047090.14	Tmem198b	chr10	protein_coding	transmembrane protein 198b
novel_NIR_1610	chr10	128639226	128640529	-	128639226	128639446	5pMXE	ENSMUST00000139227.2	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	ENSMUSG00000047090.14	Tmem198b	chr10	protein_coding	transmembrane protein 198b
novel_NIR_1611	chr10	128639226	128640529	-	128639226	128640102	5pMXE	ENSMUST00000051011.14	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.17	1	5	1	5	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.50	1	1	1	1	n	ENSMUSG00000047090.14	Tmem198b	chr10	protein_coding	transmembrane protein 198b
novel_NIR_1612	chr10	128639226	128640832	-	128639226	128639446	5pMXE	ENSMUST00000139227.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.60	3	2	3	2	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000047090.14	Tmem198b	chr10	protein_coding	transmembrane protein 198b
novel_NIR_1613	chr10	128639226	128640832	-	128639226	128640102	5pMXE	ENSMUST00000051011.14	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.25	1	3	1	3	n	1.00	3	0	3	0	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.60	3	2	3	2	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000047090.14	Tmem198b	chr10	protein_coding	transmembrane protein 198b
novel_NIR_1614	chr10	128639226	128640950	-	128639226	128639446	5pMXE	ENSMUST00000139227.2	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	ENSMUSG00000047090.14	Tmem198b	chr10	protein_coding	transmembrane protein 198b
novel_NIR_1615	chr10	128639226	128640950	-	128639226	128640102	5pMXE	ENSMUST00000051011.14	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	ENSMUSG00000047090.14	Tmem198b	chr10	protein_coding	transmembrane protein 198b
novel_NIR_1616	chr10	128647780	128649907	+	128643489	128649907	A5SS	ENSMUST00000217745.2	novel	0.00	0	53	0	53	n	0.00	0	53	0	53	n	0.00	0	84	0	84	n	0.22	15	52	15	52	y	0.01	1	89	1	89	n	0.00	0	55	0	55	n	0.00	0	79	0	79	n	0.00	0	43	0	43	n	0.05	2	41	2	41	n	0.00	0	80	0	80	n	0.00	0	59	0	59	n	0.00	0	73	0	73	n	ENSMUSG00000025354.6	Dnajc14	chr10	protein_coding	DnaJ heat shock protein family (Hsp40) member C14
novel_NIR_1617	chr10	128653256	128657598	+	128653256	128669181	A3SS	ENSMUST00000218622.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000078427.4	Sarnp	chr10	protein_coding	SAP domain containing ribonucleoprotein
novel_NIR_1618	chr10	128655949	128657411	-	128655974	128657411	A3SS	ENSMUST00000217685.2	novel	0.00	0	7	0	7	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.75	3	1	3	1	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000025353.6	Ormdl2	chr10	protein_coding	ORM1-like 2 (S. cerevisiae)
novel_NIR_1619	chr10	128655949	128657411	-	128656429	128657411	A3SS&ES	ENSMUST00000219215.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000025353.6	Ormdl2	chr10	protein_coding	ORM1-like 2 (S. cerevisiae)
novel_NIR_1620	chr10	128656187	128657411	-	128655974	128657411	A3SS	ENSMUST00000217685.2	novel	0.00	0	7	0	7	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.20	1	4	1	4	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	ENSMUSG00000025353.6	Ormdl2	chr10	protein_coding	ORM1-like 2 (S. cerevisiae)
novel_NIR_1621	chr10	128656187	128657411	-	128656429	128657411	A3SS	ENSMUST00000219215.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.33	1	2	1	2	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000025353.6	Ormdl2	chr10	protein_coding	ORM1-like 2 (S. cerevisiae)
novel_NIR_1622	chr10	128656212	128657411	-	128655974	128657411	A3SS	ENSMUST00000217685.2	novel	0.00	0	7	0	7	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.67	2	1	2	1	y	0.75	3	1	3	1	y	0.00	0	3	0	3	n	ENSMUSG00000025353.6	Ormdl2	chr10	protein_coding	ORM1-like 2 (S. cerevisiae)
novel_NIR_1623	chr10	128656212	128657411	-	128656429	128657411	A3SS	ENSMUST00000219215.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.67	2	1	2	1	y	1.00	3	0	3	0	y	0.00	0	1	0	1	n	ENSMUSG00000025353.6	Ormdl2	chr10	protein_coding	ORM1-like 2 (S. cerevisiae)
novel_NIR_1624	chr10	128656376	128657411	-	128655974	128657411	A3SS	ENSMUST00000217685.2	novel	0.00	0	7	0	7	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.60	3	2	3	2	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	3	0	3	n	ENSMUSG00000025353.6	Ormdl2	chr10	protein_coding	ORM1-like 2 (S. cerevisiae)
novel_NIR_1625	chr10	128656376	128657411	-	128656429	128657411	A3SS	ENSMUST00000219215.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	ENSMUSG00000025353.6	Ormdl2	chr10	protein_coding	ORM1-like 2 (S. cerevisiae)
novel_NIR_1626	chr10	128656380	128657411	-	128655974	128657411	A3SS	ENSMUST00000217685.2	novel	0.00	0	7	0	7	n	0.33	1	2	1	2	n	1.00	6	0	6	0	y	0.00	0	4	0	4	n	-	-	-	-	-	-	1.00	4	0	4	0	y	0.57	4	3	4	3	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.80	4	1	4	1	y	0.00	0	1	0	1	n	0.50	3	3	3	3	y	ENSMUSG00000025353.6	Ormdl2	chr10	protein_coding	ORM1-like 2 (S. cerevisiae)
novel_NIR_1627	chr10	128656380	128657411	-	128656429	128657411	A3SS	ENSMUST00000219215.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.86	6	1	6	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	4	0	4	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.80	4	1	4	1	y	-	-	-	-	-	-	0.75	3	1	3	1	y	ENSMUSG00000025353.6	Ormdl2	chr10	protein_coding	ORM1-like 2 (S. cerevisiae)
novel_NIR_1628	chr10	128657840	128658992	+	128657840	128666820	A3SS	ENSMUST00000219512.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000078427.4	Sarnp	chr10	protein_coding	SAP domain containing ribonucleoprotein
novel_NIR_1629	chr10	128657840	128660648	+	128657840	128666820	A3SS	ENSMUST00000219512.2	novel	1.00	5	0	5	0	y	1.00	6	0	6	0	y	1.00	3	0	3	0	y	1.00	6	0	6	0	n	1.00	9	0	9	0	y	1.00	2	0	2	0	y	1.00	11	0	11	0	n	1.00	11	0	11	0	n	1.00	10	0	10	0	n	1.00	11	0	11	0	y	1.00	10	0	10	0	y	1.00	2	0	2	0	y	ENSMUSG00000078427.4	Sarnp	chr10	protein_coding	SAP domain containing ribonucleoprotein
novel_NIR_1630	chr10	128657840;128660700	128660648;128669181	+	128657840;128666853	128666820;128669181	MXE	ENSMUST00000219512.2	novel	0.83	2.5	0.5	5;0	0;1	n	1.00	3.0	0.0	6;0	0;0	n	1.00	1.5	0.0	3;0	0;0	n	1.00	4.5	0.0	6;3	0;0	y	0.90	4.5	0.5	9;0	0;1	n	1.00	1.0	0.0	2;0	0;0	n	0.92	6.0	0.5	11;1	0;1	n	1.00	9.0	0.0	11;7	0;0	y	1.00	9.0	0.0	10;8	0;0	y	0.79	5.5	1.5	11;0	0;3	n	1.00	5.0	0.0	10;0	0;0	n	1.00	1.0	0.0	2;0	0;0	n	ENSMUSG00000078427.4	Sarnp	chr10	protein_coding	SAP domain containing ribonucleoprotein
novel_NIR_1631	chr10	128660700	128669181	+	128653256	128669181	A5SS	ENSMUST00000218622.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	7	0	7	0	y	1.00	8	0	8	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000078427.4	Sarnp	chr10	protein_coding	SAP domain containing ribonucleoprotein
novel_NIR_1632	chr10	128687801	128687960	+	128687801	128689052	A3SS	ENSMUST00000220381.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	6	0	6	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000078427.4	Sarnp	chr10	protein_coding	SAP domain containing ribonucleoprotein
novel_NIR_1633	chr10	128746117	128746264	+	128744921	128746264	A5SS	ENSMUST00000219317.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025351.15	Cd63	chr10	protein_coding	CD63 antigen
novel_NIR_1634	chr10	128746117	128746264	+	128745391	128746264	A5SS	ENSMUST00000220308.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025351.15	Cd63	chr10	protein_coding	CD63 antigen
novel_NIR_1635	chr10	128754278	128755016	-	128754281	128755016	A3SS	ENSMUST00000149961.2	novel	0.00	0	6	0	6	n	0.44	4	5	4	5	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	ENSMUSG00000025350.16	Rdh5	chr10	protein_coding	retinol dehydrogenase 5
novel_NIR_1636	chr10	128754278	128755016	-	128754461	128755016	A3SS	ENSMUST00000026406.14	novel	0.00	0	12	0	12	n	0.22	4	14	4	14	y	0.00	0	9	0	9	n	0.00	0	29	0	29	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	17	0	17	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	ENSMUSG00000025350.16	Rdh5	chr10	protein_coding	retinol dehydrogenase 5
novel_NIR_1637	chr10	128754281	128755817	-	128754281	128755016	5pMXE	ENSMUST00000149961.2	novel	0.25	2	6	2	6	y	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.25	1	3	1	3	n	ENSMUSG00000025350.16	Rdh5	chr10	protein_coding	retinol dehydrogenase 5
novel_NIR_1638	chr10	128754281	128755817	-	128754461	128755817	3pMXE	ENSMUST00000135161.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	13	0	13	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	7	0	7	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000025350.16	Rdh5	chr10	protein_coding	retinol dehydrogenase 5
novel_NIR_1639	chr10	128754466	128755016	-	128754281	128755016	A3SS	ENSMUST00000149961.2	novel	0.85	33	6	33	6	y	0.75	15	5	15	5	y	0.76	13	4	13	4	y	0.89	42	5	42	5	y	0.86	42	7	42	7	y	0.76	13	4	13	4	y	0.94	58	4	58	4	y	0.84	16	3	16	3	y	0.90	27	3	27	3	y	0.87	34	5	34	5	y	0.83	19	4	19	4	y	0.94	47	3	47	3	y	ENSMUSG00000025350.16	Rdh5	chr10	protein_coding	retinol dehydrogenase 5
novel_NIR_1640	chr10	128754466	128755016	-	128754461	128755016	A3SS	ENSMUST00000026406.14	novel	0.73	33	12	33	12	y	0.52	15	14	15	14	y	0.59	13	9	13	9	y	0.59	42	29	42	29	y	0.76	42	13	42	13	y	0.62	13	8	13	8	y	0.77	58	17	58	17	y	0.59	16	11	16	11	y	0.66	27	14	27	14	y	0.76	34	11	34	11	y	0.58	19	14	19	14	y	0.82	47	10	47	10	y	ENSMUSG00000025350.16	Rdh5	chr10	protein_coding	retinol dehydrogenase 5
novel_NIR_1641	chr10	128755177	128755817	-	128754461	128755817	A3SS	ENSMUST00000135161.2	novel	1.00	6	0	6	0	y	1.00	5	0	5	0	y	1.00	16	0	16	0	y	1.00	5	0	5	0	y	0.48	12	13	12	13	y	1.00	9	0	9	0	y	1.00	9	0	9	0	y	1.00	6	0	6	0	y	1.00	6	0	6	0	y	0.30	3	7	3	7	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000025350.16	Rdh5	chr10	protein_coding	retinol dehydrogenase 5
novel_NIR_1642	chr10	128758595	128758740	-	128758595	128759797	A5SS	ENSMUST00000131271.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	ENSMUSG00000090247.8	Bloc1s1	chr10	protein_coding	biogenesis of lysosomal organelles complex-1, subunit 1
novel_NIR_1643	chr10	128758595	128759173	-	128758595	128759797	A5SS	ENSMUST00000131271.2	novel	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.75	6	2	6	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	3	0	3	0	y	0.80	4	1	4	1	y	ENSMUSG00000090247.8	Bloc1s1	chr10	protein_coding	biogenesis of lysosomal organelles complex-1, subunit 1
novel_NIR_1644	chr10	128774659	128774909	+	128770063	128774909	A5SS	ENSMUST00000099112.4	novel	0.33	2	4	2	4	y	0.25	1	3	1	3	n	0.35	7	13	7	13	y	0.00	0	9	0	9	n	0.15	2	11	2	11	y	0.00	0	11	0	11	n	0.00	0	27	0	27	n	0.16	3	16	3	16	y	0.56	5	4	5	4	y	0.44	4	5	4	5	y	0.20	2	8	2	8	y	0.00	0	8	0	8	n	ENSMUSG00000025348.10	Itga7	chr10	protein_coding	integrin alpha 7
novel_NIR_1645	chr10	128777151	128777314	+	128776806	128777314	A5SS	ENSMUST00000218290.2	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.75	6	2	6	2	y	1.00	2	0	2	0	y	0.67	8	4	8	4	y	0.75	6	2	6	2	y	0.56	5	4	5	4	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000025348.10	Itga7	chr10	protein_coding	integrin alpha 7
novel_NIR_1646	chr10	128777445	128777691	+	128776806	128777691	A5SS	ENSMUST00000099112.4	novel	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	19	0	19	n	0.33	2	4	2	4	y	0.00	0	15	0	15	n	0.00	0	8	0	8	n	0.00	0	30	0	30	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	ENSMUSG00000025348.10	Itga7	chr10	protein_coding	integrin alpha 7
novel_NIR_1647	chr10	128777445	128777691	+	128777445	128778677	A3SS	ENSMUST00000218290.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025348.10	Itga7	chr10	protein_coding	integrin alpha 7
novel_NIR_1648	chr10	128777445	128777719	+	128777445	128778677	A3SS	ENSMUST00000218290.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.75	3	1	3	1	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025348.10	Itga7	chr10	protein_coding	integrin alpha 7
novel_NIR_1649	chr10	128807196	128819588	+	128807196	128813472	3pMXE	ENSMUST00000181142.2	novel	0.52	28	26	28	26	y	0.46	26	30	26	30	y	0.44	4	5	4	5	y	0.49	41	43	41	43	y	0.20	7	28	7	28	y	0.00	0	1	0	1	n	0.52	34	32	34	32	y	0.17	2	10	2	10	y	0.60	50	33	50	33	y	0.53	91	81	91	81	y	0.53	65	58	65	58	y	0.51	90	88	90	88	y	ENSMUSG00000097691.2	9030616G12Rik	chr10	lncRNA	RIKEN cDNA 9030616G12 gene
novel_NIR_1650	chr10	13390550	13390861	+	13390618	13390861	A5SS	ENSMUST00000060212.13	novel	0.08	1	12	1	12	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.14	1	6	1	6	n	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.20	2	8	2	8	y	0.00	0	6	0	6	n	0.00	0	1	0	1	n	ENSMUSG00000019810.16	Fuca2	chr10	protein_coding	fucosidase, alpha-L- 2, plasma
novel_NIR_1651	chr10	13390607	13390861	+	13390618	13390861	A5SS	ENSMUST00000060212.13	novel	0.25	4	12	4	12	y	0.50	6	6	6	6	y	0.18	2	9	2	9	y	0.50	2	2	2	2	y	0.00	0	8	0	8	n	0.14	1	6	1	6	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.33	4	8	4	8	y	0.25	2	6	2	6	y	0.67	2	1	2	1	y	ENSMUSG00000019810.16	Fuca2	chr10	protein_coding	fucosidase, alpha-L- 2, plasma
novel_NIR_1652	chr10	13720072	13744362	-	13731004	13744362	A3SS&ES	ENSMUST00000162869.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000019806.14	Aig1	chr10	protein_coding	androgen-induced 1
novel_NIR_1653	chr10	17775029	17775129	-	17775029	17775832	A5SS	ENSMUST00000218758.2	novel	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.67	6	3	6	3	y	0.50	3	3	3	3	y	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.20	1	4	1	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.50	2	2	2	2	n	0.27	3	8	3	8	y	ENSMUSG00000039879.10	Heca	chr10	protein_coding	hdc homolog, cell cycle regulator
novel_NIR_1654	chr10	17894653	17898161	-	17894653	17898562	A5SS	ENSMUST00000218994.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000078453.4	Abracl	chr10	protein_coding	ABRA C-terminal like
novel_NIR_1655	chr10	17894653	17898161	-	17894653	17898743	A5SS	ENSMUST00000220433.2	novel	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.10	1	9	1	9	n	0.50	2	2	2	2	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000078453.4	Abracl	chr10	protein_coding	ABRA C-terminal like
novel_NIR_1656	chr10	18092030	18093081	-	18092030	18095236	A5SS	ENSMUST00000080860.13	novel	0.09	1	10	1	10	n	0.27	7	19	7	19	y	0.15	2	11	2	11	y	0.17	5	25	5	25	y	0.40	10	15	10	15	y	0.31	5	11	5	11	y	0.12	4	29	4	29	n	0.33	3	6	3	6	y	0.04	1	27	1	27	n	0.17	6	30	6	30	y	0.17	4	19	4	19	y	0.19	6	26	6	26	y	ENSMUSG00000059554.13	Ccdc28a	chr10	protein_coding	coiled-coil domain containing 28A
novel_NIR_1657	chr10	18283602	18284159	+	18283602	18284163	A3SS	ENSMUST00000161510.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039835.17	Nhsl1	chr10	protein_coding	NHS-like 1
novel_NIR_1658	chr10	21183678	21184993	+	21183678	21184998	A3SS	ENSMUST00000218785.2	novel	0.00	0	4	0	4	n	0.22	2	7	2	7	y	0.00	0	23	0	23	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	17	0	17	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.13	2	13	2	13	n	ENSMUSG00000019977.17	Hbs1l	chr10	protein_coding	Hbs1-like (S. cerevisiae)
novel_NIR_1659	chr10	21183678	21184993	+	21183678	21185642	A3SS	ENSMUST00000061324.6	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	ENSMUSG00000019977.17	Hbs1l	chr10	protein_coding	Hbs1-like (S. cerevisiae)
novel_NIR_1660	chr10	21183678	21184993	+	21183678	21212875	A3SS	ENSMUST00000020153.10	novel	0.00	0	7	0	7	n	1.00	2	0	2	0	y	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.17	2	10	2	10	y	ENSMUSG00000019977.17	Hbs1l	chr10	protein_coding	Hbs1-like (S. cerevisiae)
novel_NIR_1661	chr10	21260684	21262260	+	21260684	21264837	A3SS	ENSMUST00000159163.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037542.14	Aldh8a1	chr10	protein_coding	aldehyde dehydrogenase 8 family, member A1
novel_NIR_1662	chr10	22034617	22049080	+	22034617	22159347	A3SS	ENSMUST00000105522.9	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000075297.11	H60b	chr10	protein_coding	histocompatibility 60b
novel_NIR_1663	chr10	22034617	22049080	+	22034617;22048000	22047903;22049080	ES	ENSMUST00000181645.8	novel	0.00	0	1.0	0	1;1	n	0.29	1	2.5	1	4;1	n	0.50	5	5.0	5	3;7	y	0.00	0	2.5	0	2;3	n	0.67	3	1.5	3	0;3	y	0.00	0	4.0	0	5;3	n	0.00	0	5.0	0	3;7	n	0.00	0	2.5	0	3;2	n	0.00	0	0.5	0	0;1	n	0.00	0	5.0	0	4;6	n	0.50	1	1.0	1	2;0	n	0.00	0	1.5	0	1;2	n	ENSMUSG00000053219.16	Raet1e	chr10	protein_coding	retinoic acid early transcript 1E
novel_NIR_1664	chr10	22063042	22075284	-	22063042	22082778	A5SS	ENSMUST00000180456.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000097705.2	Gm26740	chr10	lncRNA	predicted gene, 26740
novel_NIR_1665	chr10	22095640	22141185	-	22082839	22141185	A3SS	ENSMUST00000180456.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000097705.2	Gm26740	chr10	lncRNA	predicted gene, 26740
novel_NIR_1666	chr10	22587885	22607015	-	22587990	22607015	A3SS	ENSMUST00000127698.8	novel	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.18	5	23	5	23	y	0.00	0	17	0	17	n	0.04	1	23	1	23	n	0.00	0	10	0	10	n	0.00	0	23	0	23	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	21	0	21	n	0.07	1	13	1	13	n	0.07	1	14	1	14	n	ENSMUSG00000071359.14	Tbpl1	chr10	protein_coding	TATA box binding protein-like 1
novel_NIR_1667	chr10	23674783	23679660	+	23674783	23679656	A3SS	ENSMUST00000119597.8	novel	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.29	2	5	2	5	y	0.22	2	7	2	7	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.14	1	6	1	6	n	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.12	1	7	1	7	n	ENSMUSG00000037455.17	Slc18b1	chr10	protein_coding	solute carrier family 18, subfamily B, member 1
novel_NIR_1668	chr10	24099765	24116112	+	24099765	24106990	3pMXE	ENSMUST00000154916.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020000.8	Moxd1	chr10	protein_coding	monooxygenase, DBH-like 1
novel_NIR_1669	chr10	24455287	24456006	-	24425485	24456006	A3SS	ENSMUST00000136908.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000087400.9	Gm15270	chr10	lncRNA	predicted gene 15270
novel_NIR_1670	chr10	24653869	24660688	-	24653869	24654536	A5SS&ES	ENSMUST00000219861.2	novel	1.00	1	0	1	0	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.33	1	2	1	2	n	ENSMUSG00000019989.9	Enpp3	chr10	protein_coding	ectonucleotide pyrophosphatase/phosphodiesterase 3
novel_NIR_1671	chr10	24654723	24663617	-	24654723	24660296	5pMXE	ENSMUST00000219861.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000019989.9	Enpp3	chr10	protein_coding	ectonucleotide pyrophosphatase/phosphodiesterase 3
novel_NIR_1672	chr10	24774471	24776623	+	24774471	24776594	A3SS	ENSMUST00000092646.13	novel	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	17	0	17	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.00	0	17	0	17	n	0.00	0	15	0	15	n	0.20	2	8	2	8	y	0.00	0	11	0	11	n	ENSMUSG00000019984.17	Med23	chr10	protein_coding	mediator complex subunit 23
novel_NIR_1673	chr10	25147539	25148825	-	25147539	25159791	A5SS	ENSMUST00000041984.14	novel	0.11	2	17	2	17	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.05	1	18	1	18	n	0.06	1	17	1	17	n	0.00	0	17	0	17	n	0.22	2	7	2	7	y	0.00	0	3	0	3	n	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.00	0	19	0	19	n	ENSMUSG00000039166.17	Akap7	chr10	protein_coding	A kinase (PRKA) anchor protein 7
novel_NIR_1674	chr10	25147539	25150850	-	25147539	25159791	A5SS	ENSMUST00000041984.14	novel	0.19	4	17	4	17	y	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.17	1	5	1	5	n	0.00	0	18	0	18	n	0.00	0	17	0	17	n	0.00	0	17	0	17	n	0.12	1	7	1	7	n	0.00	0	3	0	3	n	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.05	1	19	1	19	n	ENSMUSG00000039166.17	Akap7	chr10	protein_coding	A kinase (PRKA) anchor protein 7
novel_NIR_1675	chr10	25165628	25170359	-	25165628	25171796	A5SS	ENSMUST00000176258.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000039166.17	Akap7	chr10	protein_coding	A kinase (PRKA) anchor protein 7
novel_NIR_1676	chr10	25165628	25170359	-	25165628	25172826	A5SS	ENSMUST00000177124.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	ENSMUSG00000039166.17	Akap7	chr10	protein_coding	A kinase (PRKA) anchor protein 7
novel_NIR_1677	chr10	25165628	25170359	-	25165628	25174033	A5SS	ENSMUST00000095779.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000039166.17	Akap7	chr10	protein_coding	A kinase (PRKA) anchor protein 7
novel_NIR_1678	chr10	25165628	25170359	-	25165628	25174938	A5SS	ENSMUST00000041984.14	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000039166.17	Akap7	chr10	protein_coding	A kinase (PRKA) anchor protein 7
novel_NIR_1679	chr10	25165628	25170359	-	25165628	25183683	A5SS	ENSMUST00000176231.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000039166.17	Akap7	chr10	protein_coding	A kinase (PRKA) anchor protein 7
novel_NIR_1680	chr10	25330104	25336690	+	25319852	25336690	A5SS	ENSMUST00000053748.16	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.17	2	10	2	10	y	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	ENSMUSG00000019978.17	Epb41l2	chr10	protein_coding	erythrocyte membrane protein band 4.1 like 2
novel_NIR_1681	chr10	25413298	25413433	+	25413298	25446891	A3SS	ENSMUST00000191547.2	novel	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.43	3	4	3	4	y	0.17	1	5	1	5	n	0.00	0	6	0	6	n	0.07	1	14	1	14	n	0.00	0	7	0	7	n	0.05	1	21	1	21	n	ENSMUSG00000101537.2	Gm29571	chr10	lncRNA	predicted gene 29571
novel_NIR_1682	chr10	25413298	25467338	+	25413298	25446891	A3SS&ES	ENSMUST00000191547.2	novel	0.50	1	1	1	1	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.12	1	7	1	7	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.33	2	4	2	4	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.09	2	21	2	21	n	ENSMUSG00000101537.2	Gm29571	chr10	lncRNA	predicted gene 29571
novel_NIR_1683	chr10	25447006	25447121	+	25447006	25547861	A3SS	ENSMUST00000191547.2	novel	0.00	0	2	0	2	n	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.50	3	3	3	3	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000101537.2	Gm29571	chr10	lncRNA	predicted gene 29571
novel_NIR_1684	chr10	25447006	25467338	+	25447006	25547861	A3SS	ENSMUST00000191547.2	novel	0.00	0	2	0	2	n	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.40	2	3	2	3	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000101537.2	Gm29571	chr10	lncRNA	predicted gene 29571
novel_NIR_1685	chr10	25447006	25490480	+	25447006	25547861	A3SS	ENSMUST00000191547.2	novel	0.67	4	2	4	2	y	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000101537.2	Gm29571	chr10	lncRNA	predicted gene 29571
novel_NIR_1686	chr10	25447006	25522001	+	25447006	25547861	A3SS	ENSMUST00000191547.2	novel	0.00	0	2	0	2	n	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	2	0	2	0	n	ENSMUSG00000101537.2	Gm29571	chr10	lncRNA	predicted gene 29571
novel_NIR_1687	chr10	25447006	25563891	+	25447006	25547861	3pMXE	ENSMUST00000191547.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.57	4	3	4	3	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000101537.2	Gm29571	chr10	lncRNA	predicted gene 29571
novel_NIR_1688	chr10	25447006;25522159	25522001;25547861	+	25447006	25547861	cassetteExon	ENSMUST00000191547.2	novel	0.00	0.0	2	0;0	2	n	0.33	1.0	2	2;0	2	n	1.00	0.5	0	0;1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	0.5	0	0;1	0	n	1.00	1.5	0	0;3	0	n	1.00	1.0	0	1;1	0	n	-	-	-	-	-	-	0.50	3.0	3	0;6	3	n	-	-	-	-	-	-	1.00	2.0	0	2;2	0	y	ENSMUSG00000101537.2	Gm29571	chr10	lncRNA	predicted gene 29571
novel_NIR_1689	chr10	25494425	25495583	-	25492793	25495583	A3SS	ENSMUST00000218080.2	novel	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	6	0	6	0	y	0.50	1	1	1	1	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	0.50	1	1	1	1	n	ENSMUSG00000112630.2	Gm36908	chr10	lncRNA	predicted gene, 36908
novel_NIR_1690	chr10	25496798	25496948	-	25496798	25497431	A5SS	ENSMUST00000218080.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000112630.2	Gm36908	chr10	lncRNA	predicted gene, 36908
novel_NIR_1691	chr10	25522159	25547861	+	25447006	25547861	A5SS	ENSMUST00000191547.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.67	6	3	6	3	y	-	-	-	-	-	-	1.00	2	0	2	0	n	ENSMUSG00000101537.2	Gm29571	chr10	lncRNA	predicted gene 29571
novel_NIR_1692	chr10	26155577	26158678	-	26155577;26156311	26155836;26158678	ES	ENSMUST00000105519.10	novel	0.00	0	5.0	0	8;2	n	0.29	3	7.5	3	4;11	y	0.00	0	16.5	0	19;14	n	0.00	0	7.0	0	6;8	n	0.00	0	14.0	0	12;16	n	0.00	0	17.5	0	21;14	n	0.00	0	14.0	0	19;9	n	0.00	0	8.0	0	8;8	n	0.00	0	6.5	0	6;7	n	0.00	0	9.0	0	13;5	n	0.00	0	4.5	0	6;3	n	0.00	0	4.5	0	4;5	n	ENSMUSG00000039089.16	L3mbtl3	chr10	protein_coding	L3MBTL3 histone methyl-lysine binding protein
novel_NIR_1693	chr10	26206155	26207718	-	26206164	26207718	A3SS	ENSMUST00000105519.10	novel	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.00	0	5	0	5	n	0.00	0	1	0	1	n	ENSMUSG00000039089.16	L3mbtl3	chr10	protein_coding	L3MBTL3 histone methyl-lysine binding protein
novel_NIR_1694	chr10	26735148	26736553	+	26730933	26736553	A5SS	ENSMUST00000176060.8	novel	0.00	0	16	0	16	n	0.30	3	7	3	7	y	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	19	0	19	n	0.09	1	10	1	10	n	0.00	0	21	0	21	n	0.00	0	16	0	16	n	0.00	0	12	0	12	n	0.03	1	32	1	32	n	0.00	0	9	0	9	n	0.00	0	19	0	19	n	ENSMUSG00000039031.17	Arhgap18	chr10	protein_coding	Rho GTPase activating protein 18
novel_NIR_1695	chr10	26765868	26792389	+	26765868;26788727	26788603;26792389	ES	ENSMUST00000039557.9	novel	0.00	0	12.0	0	16;8	n	0.15	1	5.5	1	8;3	n	0.00	0	10.5	0	13;8	n	0.00	0	16.5	0	19;14	n	0.32	7	15.0	7	17;13	y	0.00	0	4.5	0	7;2	n	0.00	0	18.0	0	17;19	n	0.00	0	12.5	0	12;13	n	0.00	0	17.5	0	16;19	n	0.00	0	23.5	0	20;27	n	0.21	3	11.0	3	12;10	y	0.11	3	24.0	3	28;20	n	ENSMUSG00000039031.17	Arhgap18	chr10	protein_coding	Rho GTPase activating protein 18
novel_NIR_1696	chr10	28372941	28427617	+	28372941	28374339	3pMXE	ENSMUST00000218584.2	novel	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	10	0	10	0	y	1.00	10	0	10	0	y	0.88	7	1	7	1	y	1.00	8	0	8	0	y	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	10	0	10	0	y	1.00	2	0	2	0	y	1.00	9	0	9	0	y	ENSMUSG00000019889.11	Ptprk	chr10	protein_coding	protein tyrosine phosphatase, receptor type, K
novel_NIR_1697	chr10	28372941	28427617	+	28372941	28427614	A3SS	ENSMUST00000166468.2	novel	0.05	2	40	2	40	n	0.05	2	40	2	40	n	0.12	10	76	10	76	n	0.15	10	56	10	56	y	0.09	7	75	7	75	n	0.16	8	43	8	43	y	0.09	5	52	5	52	n	0.02	1	52	1	52	n	0.06	2	31	2	31	n	0.17	10	48	10	48	y	0.06	2	33	2	33	n	0.11	9	75	9	75	n	ENSMUSG00000019889.11	Ptprk	chr10	protein_coding	protein tyrosine phosphatase, receptor type, K
novel_NIR_1698	chr10	28445969	28449364	+	28445969;28446187	28446170;28449364	ES	ENSMUST00000166468.2	novel	0.97	56	1.5	56	1;2	y	0.99	47	0.5	47	0;1	y	1.00	110	0.0	110	0;0	y	0.99	70	0.5	70	1;0	y	0.99	91	1.0	91	1;1	y	0.97	37	1.0	37	1;1	y	1.00	60	0.0	60	0;0	y	0.97	66	2.0	66	2;2	y	1.00	53	0.0	53	0;0	y	1.00	83	0.0	83	0;0	y	1.00	53	0.0	53	0;0	y	0.99	87	0.5	87	0;1	y	ENSMUSG00000019889.11	Ptprk	chr10	protein_coding	protein tyrosine phosphatase, receptor type, K
novel_NIR_1699	chr10	28571305	28598471	+	28544746	28598471	A5SS	ENSMUST00000060409.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000049109.16	Themis	chr10	protein_coding	thymocyte selection associated
novel_NIR_1700	chr10	29192295	29193503	+	29189360	29193503	A5SS	ENSMUST00000161605.8	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.14	1	6	1	6	n	0.14	1	6	1	6	n	0.00	0	2	0	2	n	0.67	4	2	4	2	y	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.33	3	6	3	6	y	0.00	0	7	0	7	n	0.17	2	10	2	10	y	ENSMUSG00000019883.12	Echdc1	chr10	protein_coding	enoyl Coenzyme A hydratase domain containing 1
novel_NIR_1701	chr10	29230438	29237980	-	29230443	29237980	A3SS	ENSMUST00000160144.9	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.15	2	11	2	11	y	ENSMUSG00000038876.13	Rnf146	chr10	protein_coding	ring finger protein 146
novel_NIR_1702	chr10	29230438	29237980	-	29237341	29237980	A3SS&ES	ENSMUST00000214896.2	novel	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	2	2	2	2	y	ENSMUSG00000038876.13	Rnf146	chr10	protein_coding	ring finger protein 146
novel_NIR_1703	chr10	30459396	30463435	-	30442502	30463435	A3SS	ENSMUST00000019927.7	novel	0.18	2	9	2	9	y	0.00	0	4	0	4	n	0.00	0	15	0	15	n	0.00	0	16	0	16	n	0.00	0	30	0	30	n	0.00	0	8	0	8	n	0.00	0	23	0	23	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	25	0	25	n	0.00	0	22	0	22	n	0.00	0	19	0	19	n	ENSMUSG00000019792.9	Trmt11	chr10	protein_coding	tRNA methyltransferase 11
novel_NIR_1704	chr10	30459396	30463435	-	30443867	30463435	A3SS	ENSMUST00000215041.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000019792.9	Trmt11	chr10	protein_coding	tRNA methyltransferase 11
novel_NIR_1705	chr10	30467098	30473736	-	30467098;30470184	30470111;30473736	ES	ENSMUST00000019927.7	novel	0.00	0	11.0	0	13;9	n	0.43	3	4.0	3	0;8	y	0.00	0	20.5	0	20;21	n	0.00	0	10.0	0	7;13	n	0.00	0	17.0	0	13;21	n	0.00	0	5.5	0	5;6	n	0.00	0	15.0	0	9;21	n	0.00	0	8.0	0	7;9	n	0.00	0	12.0	0	12;12	n	0.00	0	16.5	0	15;18	n	0.00	0	10.0	0	12;8	n	0.07	1	13.0	1	11;15	n	ENSMUSG00000019792.9	Trmt11	chr10	protein_coding	tRNA methyltransferase 11
novel_NIR_1706	chr10	30467098	30473736	-	30470184	30473736	A3SS&ES	ENSMUST00000215595.2	novel	0.00	0	9	0	9	n	0.27	3	8	3	8	y	0.00	0	21	0	21	n	0.00	0	13	0	13	n	0.00	0	21	0	21	n	0.00	0	6	0	6	n	0.00	0	21	0	21	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	18	0	18	n	0.00	0	8	0	8	n	0.06	1	15	1	15	n	ENSMUSG00000019792.9	Trmt11	chr10	protein_coding	tRNA methyltransferase 11
novel_NIR_1707	chr10	30475590	30476586	-	30473801	30476586	A3SS	ENSMUST00000019927.7	novel	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	26	0	26	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.05	1	19	1	19	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.18	3	14	3	14	y	0.00	0	9	0	9	n	0.00	0	19	0	19	n	ENSMUSG00000019792.9	Trmt11	chr10	protein_coding	tRNA methyltransferase 11
novel_NIR_1708	chr10	30489378	30490709	-	30489368	30490709	A3SS	ENSMUST00000160646.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	ENSMUSG00000019791.13	Hint3	chr10	protein_coding	histidine triad nucleotide binding protein 3
novel_NIR_1709	chr10	30490826	30494180	-	30490826	30505320	A5SS	ENSMUST00000216617.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000019791.13	Hint3	chr10	protein_coding	histidine triad nucleotide binding protein 3
novel_NIR_1710	chr10	30490826	30494204	-	30490826	30505320	A5SS	ENSMUST00000216617.2	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000019791.13	Hint3	chr10	protein_coding	histidine triad nucleotide binding protein 3
novel_NIR_1711	chr10	30490826	30494234	-	30490826	30505320	A5SS	ENSMUST00000216617.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000019791.13	Hint3	chr10	protein_coding	histidine triad nucleotide binding protein 3
novel_NIR_1712	chr10	33213535	33239974	+	33213535;33219119	33219072;33239974	ES	ENSMUST00000095762.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.16	4	21.5	4	21;22	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000019787.10	Trdn	chr10	protein_coding	triadin
novel_NIR_1713	chr10	33275141	33313714	+	33275141;33309726	33309697;33313714	ES	ENSMUST00000095762.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.71	11	4.5	11	3;6	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000019787.10	Trdn	chr10	protein_coding	triadin
novel_NIR_1714	chr10	33340592	33342422	+	33340592	33342419	A3SS	ENSMUST00000095762.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.20	3	12	3	12	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000019787.10	Trdn	chr10	protein_coding	triadin
novel_NIR_1715	chr10	34038985	34059692	-	34038985	34052046	5pMXE	ENSMUST00000217051.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000039497.9	Dse	chr10	protein_coding	dermatan sulfate epimerase
novel_NIR_1716	chr10	34038985	34059692	-	34038985	34059688	A5SS	ENSMUST00000048010.9	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.38	3	5	3	5	y	-	-	-	-	-	-	0.11	1	8	1	8	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	ENSMUSG00000039497.9	Dse	chr10	protein_coding	dermatan sulfate epimerase
novel_NIR_1717	chr10	34174315	34176906	+	34175404	34176906	5pMXE	ENSMUST00000213791.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000039485.9	Tspyl4	chr10	protein_coding	TSPY-like 4
novel_NIR_1718	chr10	38995030	38998173	-	38995030;38996392	38996222;38998173	ES	ENSMUST00000125042.8	novel	-	-	-	-	-	-	0.00	0	3.0	0	0;6	n	-	-	-	-	-	-	0.00	0	1.5	0	0;3	n	0.00	0	1.0	0	0;2	n	0.00	0	1.5	0	0;3	n	0.00	0	1.0	0	0;2	n	0.00	0	0.5	0	0;1	n	0.36	2	3.5	2	1;6	y	0.25	1	3.0	1	1;5	n	0.67	3	1.5	3	0;3	y	0.00	0	2.0	0	0;4	n	ENSMUSG00000051736.9	Fam229b	chr10	protein_coding	family with sequence similarity 229, member B
novel_NIR_1719	chr10	38995030	38998173	-	38995030;38996392	38996254;38998173	ES	ENSMUST00000063204.9	novel	0.00	0	3.5	0	7;0	n	0.00	0	6.5	0	7;6	n	0.00	0	0.5	0	1;0	n	0.00	0	2.0	0	1;3	n	0.00	0	1.5	0	1;2	n	0.00	0	6.5	0	10;3	n	0.00	0	2.5	0	3;2	n	0.00	0	2.5	0	4;1	n	0.33	2	4.0	2	2;6	y	0.25	1	3.0	1	1;5	n	0.40	3	4.5	3	6;3	y	0.00	0	2.5	0	1;4	n	ENSMUSG00000051736.9	Fam229b	chr10	protein_coding	family with sequence similarity 229, member B
novel_NIR_1720	chr10	39021709	39023249	+	39021709	39023308	A3SS	ENSMUST00000019991.8	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000019845.9	Tube1	chr10	protein_coding	tubulin, epsilon 1
novel_NIR_1721	chr10	39501589	39501846	+	39489342	39501846	A5SS	ENSMUST00000019987.7	novel	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.50	2	2	2	2	y	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	ENSMUSG00000019842.7	Traf3ip2	chr10	protein_coding	TRAF3 interacting protein 2
novel_NIR_1722	chr10	39682742	39682828	+	39682742	39682831	A3SS	ENSMUST00000019986.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.22	2	7	2	7	y	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000019841.16	Rev3l	chr10	protein_coding	REV3 like, DNA directed polymerase zeta catalytic subunit
novel_NIR_1723	chr10	39724801	39727863	+	39727399	39727863	A5SS&ES	ENSMUST00000139803.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000019841.16	Rev3l	chr10	protein_coding	REV3 like, DNA directed polymerase zeta catalytic subunit
novel_NIR_1724	chr10	39882090	39883010	-	39882090	39883256	A5SS	ENSMUST00000163705.3	novel	0.06	4	64	4	64	n	0.00	0	44	0	44	n	0.21	10	37	10	37	y	0.08	5	59	5	59	n	0.11	7	54	7	54	n	0.09	3	31	3	31	n	0.11	8	66	8	66	n	0.16	10	53	10	53	y	0.11	7	57	7	57	n	0.04	4	87	4	87	n	0.07	4	57	4	57	n	0.14	10	60	10	60	n	ENSMUSG00000038522.8	Mfsd4b1	chr10	protein_coding	major facilitator superfamily domain containing 4B1
novel_NIR_1725	chr10	39995045	40017699	-	40009647	40017699	3pMXE	ENSMUST00000217252.2	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.75	3	1	3	1	y	0.00	0	3	0	3	n	0.50	3	3	3	3	y	ENSMUSG00000019838.12	Slc16a10	chr10	protein_coding	solute carrier family 16 (monocarboxylic acid transporters), member 10
novel_NIR_1726	chr10	40040282	40043657	+	40040282;40041225	40041066;40043657	ES	ENSMUST00000213387.2	novel	0.00	0	0.5	0	0;1	n	0.29	2	5.0	2	6;4	y	-	-	-	-	-	-	0.60	9	6.0	9	6;6	y	0.26	4	11.5	4	16;7	y	0.25	1	3.0	1	1;5	n	0.29	2	5.0	2	3;7	y	0.00	0	2.5	0	2;3	n	0.43	3	4.0	3	4;4	y	0.62	13	8.0	13	6;10	y	0.31	2	4.5	2	4;5	y	0.48	6	6.5	6	5;8	y	ENSMUSG00000110781.2	Gm31992	chr10	lncRNA	predicted gene, 31992
novel_NIR_1727	chr10	40043784	40051579	+	40043784	40045359	3pMXE	ENSMUST00000213387.2	novel	0.30	3	7	3	7	y	0.50	4	4	4	4	y	0.00	0	1	0	1	n	0.20	2	8	2	8	y	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.43	3	4	3	4	y	0.00	0	4	0	4	n	0.23	3	10	3	10	y	0.11	2	17	2	17	n	0.40	8	12	8	12	y	0.28	5	13	5	13	y	ENSMUSG00000110781.2	Gm31992	chr10	lncRNA	predicted gene, 31992
novel_NIR_1728	chr10	40109203	40112119	-	40109203	40115744	A5SS	ENSMUST00000183052.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038510.13	Rpf2	chr10	protein_coding	ribosome production factor 2 homolog
novel_NIR_1729	chr10	40109203	40112119	-	40109203	40120581	A5SS	ENSMUST00000183114.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038510.13	Rpf2	chr10	protein_coding	ribosome production factor 2 homolog
novel_NIR_1730	chr10	40808029	40809112	+	40808029	40809109	A3SS	ENSMUST00000019975.14	novel	0.00	0	4	0	4	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000019831.15	Wasf1	chr10	protein_coding	WASP family, member 1
novel_NIR_1731	chr10	41153510	41153712	-	41153510	41161286	A5SS	ENSMUST00000043814.5	novel	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	15	0	15	n	0.00	0	20	0	20	n	0.11	2	17	2	17	n	0.00	0	10	0	10	n	0.11	2	17	2	17	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	19	0	19	n	0.15	2	11	2	11	y	0.00	0	26	0	26	n	ENSMUSG00000038417.5	Fig4	chr10	protein_coding	FIG4 phosphoinositide 5-phosphatase
novel_NIR_1732	chr10	41328086	41331024	+	41328064	41331024	A5SS	ENSMUST00000080771.10	novel	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.25	3	9	3	9	y	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	24	0	24	n	0.00	0	11	0	11	n	0.00	0	18	0	18	n	ENSMUSG00000019826.12	Zbtb24	chr10	protein_coding	zinc finger and BTB domain containing 24
novel_NIR_1733	chr10	41331191	41331674	+	41331191	41331669	A3SS	ENSMUST00000080771.10	novel	0.08	1	11	1	11	n	0.07	1	14	1	14	n	0.00	0	26	0	26	n	0.00	0	11	0	11	n	0.00	0	18	0	18	n	0.17	2	10	2	10	y	0.00	0	25	0	25	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	21	0	21	n	0.14	2	12	2	12	n	0.00	0	9	0	9	n	ENSMUSG00000019826.12	Zbtb24	chr10	protein_coding	zinc finger and BTB domain containing 24
novel_NIR_1734	chr10	41340038	41340273	+	41332611	41340273	A5SS	ENSMUST00000213797.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000019826.12	Zbtb24	chr10	protein_coding	zinc finger and BTB domain containing 24
novel_NIR_1735	chr10	41364305	41364427	-	41364305	41364425	A5SS	ENSMUST00000155411.8	novel	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.22	2	7	2	7	y	0.14	1	6	1	6	n	0.00	0	4	0	4	n	ENSMUSG00000019822.13	Smpd2	chr10	protein_coding	sphingomyelin phosphodiesterase 2, neutral
novel_NIR_1736	chr10	41429200	41429412	-	41428466	41429412	A3SS	ENSMUST00000160002.8	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000075225.16	Ccdc162	chr10	protein_coding	coiled-coil domain containing 162
novel_NIR_1737	chr10	41429200	41429412	-	41429203	41429412	A3SS	ENSMUST00000219054.2	novel	0.00	0	7	0	7	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000075225.16	Ccdc162	chr10	protein_coding	coiled-coil domain containing 162
novel_NIR_1738	chr10	41429203	41429400	-	41429203	41429412	A5SS	ENSMUST00000219054.2	novel	0.00	0	7	0	7	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.17	1	5	1	5	n	0.20	2	8	2	8	y	0.50	1	1	1	1	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000075225.16	Ccdc162	chr10	protein_coding	coiled-coil domain containing 162
novel_NIR_1739	chr10	41429825	41430216	+	41429825	41432074	A3SS	ENSMUST00000164074.2	novel	0.00	0	4	0	4	n	0.17	2	10	2	10	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	17	0	17	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.10	1	9	1	9	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	ENSMUSG00000090708.2	Gm17196	chr10	lncRNA	predicted gene 17196
novel_NIR_1740	chr10	41432814	41434479	-	41432814	41436425	A5SS	ENSMUST00000160002.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000075225.16	Ccdc162	chr10	protein_coding	coiled-coil domain containing 162
novel_NIR_1741	chr10	41432814	41434479	-	41432814	41437107	A5SS	ENSMUST00000219054.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000075225.16	Ccdc162	chr10	protein_coding	coiled-coil domain containing 162
novel_NIR_1742	chr10	41456677	41457155	-	41456359	41457155	A3SS	ENSMUST00000219054.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000075225.16	Ccdc162	chr10	protein_coding	coiled-coil domain containing 162
novel_NIR_1743	chr10	41595903	41597591	-	41595903	41597553	A5SS	ENSMUST00000105505.10	novel	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.00	0	14	0	14	n	0.00	0	4	0	4	n	0.16	4	21	4	21	y	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	ENSMUSG00000019813.17	Cep57l1	chr10	protein_coding	centrosomal protein 57-like 1
novel_NIR_1744	chr10	41595903	41597591	-	41595903	41605327	A5SS	ENSMUST00000191498.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000019813.17	Cep57l1	chr10	protein_coding	centrosomal protein 57-like 1
novel_NIR_1745	chr10	41599001	41604624	-	41599001	41599857	A5SS&ES	ENSMUST00000105505.10	novel	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.22	2	7	2	7	y	0.00	0	2	0	2	n	0.00	0	15	0	15	n	ENSMUSG00000019813.17	Cep57l1	chr10	protein_coding	centrosomal protein 57-like 1
novel_NIR_1746	chr10	41599001	41604624	-	41599001;41599934	41599857;41604624	ES	ENSMUST00000186239.7	novel	0.00	0	1.0	0	1;1	n	0.00	0	4.0	0	7;1	n	0.00	0	4.0	0	7;1	n	0.00	0	4.0	0	7;1	n	0.00	0	6.0	0	8;4	n	0.00	0	1.5	0	3;0	n	0.00	0	6.5	0	10;3	n	0.00	0	4.5	0	7;2	n	0.00	0	6.0	0	8;4	n	0.29	2	5.0	2	7;3	y	0.00	0	1.0	0	2;0	n	0.00	0	8.0	0	15;1	n	ENSMUSG00000019813.17	Cep57l1	chr10	protein_coding	centrosomal protein 57-like 1
novel_NIR_1747	chr10	41678342	41685784	-	41685659	41685784	A3SS&ES	ENSMUST00000189770.7	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000019813.17	Cep57l1	chr10	protein_coding	centrosomal protein 57-like 1
novel_NIR_1748	chr10	42062291	42150812	-	42123782	42150812	3pMXE	ENSMUST00000105501.2	novel	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	19	0	19	n	0.00	0	11	0	11	n	0.20	2	8	2	8	y	ENSMUSG00000048756.12	Foxo3	chr10	protein_coding	forkhead box O3
novel_NIR_1749	chr10	42123782	42150205	-	42123782	42150812	A5SS	ENSMUST00000105501.2	novel	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.18	2	9	2	9	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.05	1	19	1	19	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	ENSMUSG00000048756.12	Foxo3	chr10	protein_coding	forkhead box O3
novel_NIR_1750	chr10	42152393	42152522	-	42151537	42152522	A3SS	ENSMUST00000056974.4	novel	1.00	3	0	3	0	y	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	ENSMUSG00000048756.12	Foxo3	chr10	protein_coding	forkhead box O3
novel_NIR_1751	chr10	42302583	42330303	-	42302583	42354259	A5SS	ENSMUST00000151747.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038302.15	Afg1l	chr10	protein_coding	AFG1 like ATPase
novel_NIR_1752	chr10	42622125	42630407	-	42622125	42634511	A5SS	ENSMUST00000129933.2	novel	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000086428.2	Gm15199	chr10	lncRNA	predicted gene 15199
novel_NIR_1753	chr10	43271688	43282795	+	43271688	43315795	A3SS	ENSMUST00000162008.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.33	1	2	1	2	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.40	2	3	2	3	y	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000038240.14	Pdss2	chr10	protein_coding	prenyl (solanesyl) diphosphate synthase, subunit 2
novel_NIR_1754	chr10	43289543	43316144	+	43289543	43340621	A3SS	ENSMUST00000159139.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000038240.14	Pdss2	chr10	protein_coding	prenyl (solanesyl) diphosphate synthase, subunit 2
novel_NIR_1755	chr10	43394697	43398166	+	43394697	43431035	A3SS	ENSMUST00000216546.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.80	4	1	4	1	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	7	0	7	0	y	ENSMUSG00000111368.2	Gm47889	chr10	lncRNA	predicted gene, 47889
novel_NIR_1756	chr10	43394697	43399708	+	43394697	43431035	A3SS	ENSMUST00000216546.2	novel	1.00	10	0	10	0	y	1.00	14	0	14	0	y	1.00	3	0	3	0	y	1.00	9	0	9	0	y	1.00	15	0	15	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	8	0	8	0	y	0.88	7	1	7	1	y	1.00	8	0	8	0	y	1.00	1	0	1	0	n	1.00	5	0	5	0	y	ENSMUSG00000111368.2	Gm47889	chr10	lncRNA	predicted gene, 47889
novel_NIR_1757	chr10	43394697	43400328	+	43394697	43431035	A3SS	ENSMUST00000216546.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000111368.2	Gm47889	chr10	lncRNA	predicted gene, 47889
novel_NIR_1758	chr10	43394697	43410800	+	43394697	43431035	A3SS	ENSMUST00000216546.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000111368.2	Gm47889	chr10	lncRNA	predicted gene, 47889
novel_NIR_1759	chr10	43401404	43402072	-	43401404	43401698	5pMXE	ENSMUST00000152926.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000019797.12	Mtres1	chr10	protein_coding	mitochondrial transcription rescue factor 1
novel_NIR_1760	chr10	43409451	43409544	-	43409451	43416936	A5SS	ENSMUST00000126463.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000019797.12	Mtres1	chr10	protein_coding	mitochondrial transcription rescue factor 1
novel_NIR_1761	chr10	43617998	43618381	-	43617998	43618770	A5SS	ENSMUST00000214129.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000111377.2	Gm40634	chr10	lncRNA	predicted gene, 40634
novel_NIR_1762	chr10	43786913	43804319	+	43786913;43797431	43797383;43804319	ES	ENSMUST00000054418.12	novel	0.00	0	26.5	0	20;33	n	0.00	0	21.0	0	19;23	n	0.00	0	25.0	0	23;27	n	0.00	0	32.0	0	34;30	n	0.09	3	30.5	3	29;32	n	0.11	2	15.5	2	12;19	n	0.15	5	28.5	5	30;27	y	0.20	4	16.0	4	12;20	y	0.00	0	20.5	0	23;18	n	0.00	0	35.5	0	31;40	n	0.00	0	14.0	0	16;12	n	0.04	1	23.5	1	20;27	n	ENSMUSG00000019864.15	Rtn4ip1	chr10	protein_coding	reticulon 4 interacting protein 1
novel_NIR_1763	chr10	4379171	4382231	-	4379171	4382064	A5SS	ENSMUST00000155172.8	novel	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.40	4	6	4	6	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000019763.12	Rmnd1	chr10	protein_coding	required for meiotic nuclear division 1 homolog
novel_NIR_1764	chr10	43804077	43804319	+	43797431	43804319	A5SS	ENSMUST00000054418.12	novel	0.00	0	33	0	33	n	0.00	0	23	0	23	n	0.00	0	27	0	27	n	0.17	6	30	6	30	y	0.00	0	32	0	32	n	0.00	0	19	0	19	n	0.00	0	27	0	27	n	0.00	0	20	0	20	n	0.14	3	18	3	18	n	0.15	7	40	7	40	y	0.14	2	12	2	12	n	0.00	0	27	0	27	n	ENSMUSG00000019864.15	Rtn4ip1	chr10	protein_coding	reticulon 4 interacting protein 1
novel_NIR_1765	chr10	4384933	4389496	+	4384933	4398309	A3SS	ENSMUST00000143037.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061759.16	Armt1	chr10	protein_coding	acidic residue methyltransferase 1
novel_NIR_1766	chr10	4384933	4389496	+	4384933	4400647	A3SS	ENSMUST00000152294.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000061759.16	Armt1	chr10	protein_coding	acidic residue methyltransferase 1
novel_NIR_1767	chr10	45481680	45491169	+	45481680	45494594	A3SS	ENSMUST00000037044.13	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.33	1	2	1	2	n	0.00	0	9	0	9	n	0.22	2	7	2	7	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	7	0	7	n	ENSMUSG00000038822.16	Hace1	chr10	protein_coding	HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1
novel_NIR_1768	chr10	45548535	45548648	+	45548535	45548635	A3SS	ENSMUST00000037044.13	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.10	1	9	1	9	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.36	4	7	4	7	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000038822.16	Hace1	chr10	protein_coding	HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1
novel_NIR_1769	chr10	4604246	4610428	+	4604246	4619223	A3SS	ENSMUST00000138828.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000019768.17	Esr1	chr10	protein_coding	estrogen receptor 1 (alpha)
novel_NIR_1770	chr10	4622567	4662313	+	4562155	4662313	A5SS	ENSMUST00000067086.14	novel	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000019768.17	Esr1	chr10	protein_coding	estrogen receptor 1 (alpha)
novel_NIR_1771	chr10	4622567	4662313	+	4619332	4662313	A5SS	ENSMUST00000149195.8	novel	0.00	0	5	0	5	n	0.50	1	1	1	1	n	1.00	2	0	2	0	y	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.33	2	4	2	4	y	ENSMUSG00000019768.17	Esr1	chr10	protein_coding	estrogen receptor 1 (alpha)
novel_NIR_1772	chr10	4622567	4662313	+	4660294	4662313	5pMXE	ENSMUST00000105588.8	novel	0.00	0	5	0	5	n	1.00	1	0	1	0	n	0.67	2	1	2	1	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.29	2	5	2	5	y	ENSMUSG00000019768.17	Esr1	chr10	protein_coding	estrogen receptor 1 (alpha)
novel_NIR_1773	chr10	4636956	4662313	+	4562155	4662313	A5SS	ENSMUST00000067086.14	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	0.80	4	1	4	1	y	ENSMUSG00000019768.17	Esr1	chr10	protein_coding	estrogen receptor 1 (alpha)
novel_NIR_1774	chr10	4636956	4662313	+	4619332	4662313	A5SS	ENSMUST00000149195.8	novel	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.33	2	4	2	4	n	0.50	4	4	4	4	y	0.33	1	2	1	2	n	0.50	4	4	4	4	y	ENSMUSG00000019768.17	Esr1	chr10	protein_coding	estrogen receptor 1 (alpha)
novel_NIR_1775	chr10	4636956	4662313	+	4660294	4662313	5pMXE	ENSMUST00000105588.8	novel	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.57	4	3	4	3	y	0.50	1	1	1	1	n	0.44	4	5	4	5	y	ENSMUSG00000019768.17	Esr1	chr10	protein_coding	estrogen receptor 1 (alpha)
novel_NIR_1776	chr10	4684453	4696617	+	4662847	4696617	A5SS	ENSMUST00000149195.8	novel	0.00	0	8	0	8	n	0.29	2	5	2	5	y	0.50	9	9	9	9	y	0.35	7	13	7	13	y	0.09	2	20	2	20	n	0.43	3	4	3	4	y	0.14	1	6	1	6	n	0.27	3	8	3	8	y	0.19	3	13	3	13	y	0.30	3	7	3	7	y	0.10	1	9	1	9	n	0.00	0	24	0	24	n	ENSMUSG00000019768.17	Esr1	chr10	protein_coding	estrogen receptor 1 (alpha)
novel_NIR_1777	chr10	4889350	4910357	+	4889350	4914701	A3SS	ENSMUST00000105588.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000019768.17	Esr1	chr10	protein_coding	estrogen receptor 1 (alpha)
novel_NIR_1778	chr10	4972247	4981766	-	4972247;4980434	4980376;4981766	ES	ENSMUST00000215295.2	novel	0.00	0	12.0	0	9;15	n	0.00	0	12.5	0	8;17	n	0.00	0	18.5	0	14;23	n	0.00	0	18.5	0	15;22	n	0.00	0	23.5	0	16;31	n	0.00	0	9.0	0	11;7	n	0.04	1	21.5	1	18;25	n	0.00	0	13.0	0	10;16	n	0.06	1	14.5	1	14;15	n	0.00	0	17.5	0	18;17	n	0.38	7	11.5	7	10;13	y	0.00	0	26.0	0	23;29	n	ENSMUSG00000096054.4	Syne1	chr10	protein_coding	spectrin repeat containing, nuclear envelope 1
novel_NIR_1779	chr10	4997714	4998724	-	4997858	4998724	A3SS	ENSMUST00000215295.2	novel	0.50	3	3	3	3	y	0.00	0	7	0	7	n	1.00	3	0	3	0	y	0.05	1	19	1	19	n	0.07	2	26	2	26	n	0.00	0	13	0	13	n	0.05	1	18	1	18	n	0.00	0	21	0	21	n	0.17	2	10	2	10	y	0.10	1	9	1	9	n	0.00	0	18	0	18	n	0.14	4	24	4	24	n	ENSMUSG00000096054.4	Syne1	chr10	protein_coding	spectrin repeat containing, nuclear envelope 1
novel_NIR_1780	chr10	50494367	50511129	+	50494367	50514004	A3SS	ENSMUST00000035606.10	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.06	1	16	1	16	n	0.00	0	4	0	4	n	0.00	0	21	0	21	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.71	5	2	5	2	y	0.33	4	8	4	8	n	0.17	1	5	1	5	n	0.00	0	9	0	9	n	ENSMUSG00000038774.10	Ascc3	chr10	protein_coding	activating signal cointegrator 1 complex subunit 3
novel_NIR_1781	chr10	50494367;50511197	50511129;50514004	+	50494367	50514004	cassetteExon	ENSMUST00000035606.10	novel	-	-	-	-	-	-	0.00	0.0	3	0;0	3	n	0.06	1.0	16	1;1	16	n	0.00	0.0	4	0;0	4	n	0.00	0.0	21	0;0	21	n	0.00	0.0	7	0;0	7	n	0.00	0.0	2	0;0	2	n	0.00	0.0	8	0;0	8	n	0.56	2.5	2	5;0	2	n	0.27	3.0	8	4;2	8	y	0.09	0.5	5	1;0	5	n	0.00	0.0	9	0;0	9	n	ENSMUSG00000038774.10	Ascc3	chr10	protein_coding	activating signal cointegrator 1 complex subunit 3
novel_NIR_1782	chr10	5112468	5118687	-	5112465	5118687	A3SS	ENSMUST00000215295.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.11	1	8	1	8	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	10	0	10	n	ENSMUSG00000096054.4	Syne1	chr10	protein_coding	spectrin repeat containing, nuclear envelope 1
novel_NIR_1783	chr10	51357520	51357763	+	51357037	51357763	A5SS	ENSMUST00000219151.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.62	5	3	5	3	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000112023.2	Lilr4b	chr10	protein_coding	leukocyte immunoglobulin-like receptor, subfamily B, member 4B
novel_NIR_1784	chr10	51357520	51357763	+	51357520	51357663	A3SS	ENSMUST00000102894.6	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.36	5	9	5	9	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.20	1	4	1	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000112023.2	Lilr4b	chr10	protein_coding	leukocyte immunoglobulin-like receptor, subfamily B, member 4B
novel_NIR_1785	chr10	51360665	51361352	+	51360665	51361312	A3SS	ENSMUST00000219178.2	novel	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000112023.2	Lilr4b	chr10	protein_coding	leukocyte immunoglobulin-like receptor, subfamily B, member 4B
novel_NIR_1786	chr10	51360665	51361352	+	51360665	51361809	A3SS	ENSMUST00000102894.6	novel	0.00	0	1	0	1	n	0.33	2	4	2	4	y	0.00	0	26	0	26	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	ENSMUSG00000112023.2	Lilr4b	chr10	protein_coding	leukocyte immunoglobulin-like receptor, subfamily B, member 4B
novel_NIR_1787	chr10	51370941	51371633	+	51370941	51372090	A3SS	ENSMUST00000219696.2	novel	0.00	0	8	0	8	n	0.00	0	19	0	19	n	0.06	3	50	3	50	n	0.00	0	9	0	9	n	0.00	0	36	0	36	n	0.00	0	3	0	3	n	0.15	3	17	3	17	y	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.09	1	10	1	10	n	0.00	0	6	0	6	n	ENSMUSG00000062593.18	Gm49339	chr10	protein_coding	predicted gene, 49339
novel_NIR_1788	chr10	51370941	51371633	+	51370989	51371633	A5SS	ENSMUST00000218123.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000062593.18	Gm49339	chr10	protein_coding	predicted gene, 49339
novel_NIR_1789	chr10	51901459	51903530	+	51901459	51903527	A3SS	ENSMUST00000163017.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.54	14	12	14	12	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000049641.16	Vgll2	chr10	protein_coding	vestigial like family member 2
novel_NIR_1790	chr10	53234303	53256708	-	53234303	53252041	5pMXE	ENSMUST00000095691.7	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000038594.10	Cep85l	chr10	protein_coding	centrosomal protein 85-like
novel_NIR_1791	chr10	53234303	53256708	-	53234303	53255605	5pMXE	ENSMUST00000220443.2	novel	0.00	0	13	0	13	n	0.20	2	8	2	8	y	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.08	1	12	1	12	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.11	2	17	2	17	n	0.00	0	3	0	3	n	0.08	1	12	1	12	n	ENSMUSG00000038594.10	Cep85l	chr10	protein_coding	centrosomal protein 85-like
novel_NIR_1792	chr10	53243531	53255605	-	53243531	53252041	5pMXE	ENSMUST00000218596.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038594.10	Cep85l	chr10	protein_coding	centrosomal protein 85-like
novel_NIR_1793	chr10	53423731	53424593	-	53423702	53424593	A3SS	ENSMUST00000237608.2	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.18	2	9	2	9	y	ENSMUSG00000058298.11	Mcm9	chr10	protein_coding	minichromosome maintenance 9 homologous recombination repair factor
novel_NIR_1794	chr10	53492271	53496230	-	53492148	53496230	A3SS	ENSMUST00000237608.2	novel	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	16	0	16	n	0.38	3	5	3	5	y	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	ENSMUSG00000058298.11	Mcm9	chr10	protein_coding	minichromosome maintenance 9 homologous recombination repair factor
novel_NIR_1795	chr10	53492271	53496230	-	53492211	53496230	A3SS	ENSMUST00000218549.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000058298.11	Mcm9	chr10	protein_coding	minichromosome maintenance 9 homologous recombination repair factor
novel_NIR_1796	chr10	5359467	5359764	-	5355562	5359764	A3SS	ENSMUST00000215295.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.33	2	4	2	4	y	ENSMUSG00000096054.4	Syne1	chr10	protein_coding	spectrin repeat containing, nuclear envelope 1
novel_NIR_1797	chr10	55987432	55999607	-	55965935	55999607	A3SS	ENSMUST00000099739.5	novel	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.50	1	1	1	1	n	0.00	0	5	0	5	n	ENSMUSG00000038122.10	Tbc1d32	chr10	protein_coding	TBC1 domain family, member 32
novel_NIR_1798	chr10	56099850	56100660	-	56091214	56100660	A3SS	ENSMUST00000099739.5	novel	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.40	2	3	2	3	y	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	1.00	2	0	2	0	y	ENSMUSG00000038122.10	Tbc1d32	chr10	protein_coding	TBC1 domain family, member 32
novel_NIR_1799	chr10	57378806	57380643	+	57378806	57380646	A3SS	ENSMUST00000220353.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000019878.9	Hsf2	chr10	protein_coding	heat shock factor 2
novel_NIR_1800	chr10	57400179	57400416	-	57400083	57400416	A3SS	ENSMUST00000169122.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.93	13	1	13	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000019877.11	Serinc1	chr10	protein_coding	serine incorporator 1
novel_NIR_1801	chr10	5752532	5753075	-	5752532	5754538	A5SS	ENSMUST00000142200.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000019773.8	Fbxo5	chr10	protein_coding	F-box protein 5
novel_NIR_1802	chr10	5752532	5753075	-	5752532	5755259	A5SS	ENSMUST00000019907.8	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.50	2	2	2	2	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	ENSMUSG00000019773.8	Fbxo5	chr10	protein_coding	F-box protein 5
novel_NIR_1803	chr10	57670945	57677007	+	57670505	57677007	A5SS	ENSMUST00000151623.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	ENSMUSG00000019872.14	Smpdl3a	chr10	protein_coding	sphingomyelin phosphodiesterase, acid-like 3A
novel_NIR_1804	chr10	57670945	57677007	+	57670945	57677012	A3SS	ENSMUST00000125076.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	ENSMUSG00000019872.14	Smpdl3a	chr10	protein_coding	sphingomyelin phosphodiesterase, acid-like 3A
novel_NIR_1805	chr10	57672108	57677007	+	57670505	57677007	A5SS	ENSMUST00000151623.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000019872.14	Smpdl3a	chr10	protein_coding	sphingomyelin phosphodiesterase, acid-like 3A
novel_NIR_1806	chr10	5767612	5768928	-	5767612	5768801	A5SS	ENSMUST00000019908.9	novel	0.16	5	26	5	26	y	0.00	0	11	0	11	n	0.06	1	15	1	15	n	0.13	2	13	2	13	n	0.00	0	13	0	13	n	0.25	3	9	3	9	y	0.18	4	18	4	18	y	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	18	0	18	n	0.18	2	9	2	9	y	0.24	5	16	5	16	y	ENSMUSG00000019774.9	Mtrf1l	chr10	protein_coding	mitochondrial translational release factor 1-like
novel_NIR_1807	chr10	58343463	58348901	+	58343463;58345454	58345327;58348901	ES	ENSMUST00000036576.10	novel	0.77	5	1.5	5	1;2	y	0.00	0	0.5	0	0;1	n	0.00	0	2.5	0	3;2	n	0.57	4	3.0	4	6;0	y	0.50	3	3.0	3	1;5	y	0.50	3	3.0	3	3;3	y	0.80	4	1.0	4	2;0	y	0.25	1	3.0	1	2;4	n	0.88	7	1.0	7	0;2	y	0.80	4	1.0	4	1;1	y	0.62	4	2.5	4	1;4	y	1.00	10	0.0	10	0;0	y	ENSMUSG00000038010.10	Ccdc138	chr10	protein_coding	coiled-coil domain containing 138
novel_NIR_1808	chr10	58396369	58397723	+	58380931	58397723	A5SS	ENSMUST00000036576.10	novel	0.40	2	3	2	3	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	ENSMUSG00000038010.10	Ccdc138	chr10	protein_coding	coiled-coil domain containing 138
novel_NIR_1809	chr10	59028637	59057201	-	59028637	59057213	A5SS	ENSMUST00000220156.2	novel	0.12	2	14	2	14	n	0.50	4	4	4	4	y	0.22	12	42	12	42	y	0.30	8	19	8	19	y	0.12	4	30	4	30	n	0.33	7	14	7	14	y	0.03	1	29	1	29	n	0.04	1	27	1	27	n	0.05	1	19	1	19	n	0.14	4	24	4	24	n	0.00	0	21	0	21	n	0.09	4	40	4	40	n	ENSMUSG00000019917.11	Septin10	chr10	protein_coding	septin 10
novel_NIR_1810	chr10	59186385	59187905	+	59186422	59187905	A5SS	ENSMUST00000009789.15	novel	0.00	0	24	0	24	n	0.00	0	16	0	16	n	0.15	9	51	9	51	y	0.00	0	11	0	11	n	0.15	4	23	4	23	y	0.00	0	10	0	10	n	0.00	0	32	0	32	n	0.06	1	15	1	15	n	0.18	2	9	2	9	y	0.10	2	19	2	19	n	0.17	2	10	2	10	y	0.18	2	9	2	9	y	ENSMUSG00000019916.15	P4ha1	chr10	protein_coding	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide
novel_NIR_1811	chr10	59190232	59191172	+	59188081	59191172	A5SS	ENSMUST00000092512.11	novel	0.00	0	24	0	24	n	0.05	1	19	1	19	n	0.00	0	20	0	20	n	0.00	0	20	0	20	n	0.17	4	19	4	19	y	0.00	0	6	0	6	n	0.11	2	17	2	17	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	16	0	16	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	ENSMUSG00000019916.15	P4ha1	chr10	protein_coding	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide
novel_NIR_1812	chr10	59190232	59191172	+	59190232	59197683	A3SS	ENSMUST00000009789.15	novel	0.00	0	8	0	8	n	0.20	1	4	1	4	n	0.00	0	25	0	25	n	0.00	0	5	0	5	n	0.27	4	11	4	11	y	0.00	0	10	0	10	n	0.22	2	7	2	7	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	ENSMUSG00000019916.15	P4ha1	chr10	protein_coding	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide
novel_NIR_1813	chr10	59252335	59257288	+	59252335	59257194	A3SS	ENSMUST00000162643.2	novel	1.00	63	0	63	0	y	0.97	73	2	73	2	y	0.98	96	2	96	2	y	1.00	62	0	62	0	y	1.00	80	0	80	0	y	0.96	55	2	55	2	y	0.95	86	5	86	5	y	0.96	52	2	52	2	y	1.00	39	0	39	0	y	0.92	59	5	59	5	y	0.95	61	3	61	3	y	1.00	58	0	58	0	y	ENSMUSG00000009646.14	Pla2g12b	chr10	protein_coding	phospholipase A2, group XIIB
novel_NIR_1814	chr10	59252335	59257288	+	59252335	59257285	A3SS	ENSMUST00000009790.14	novel	0.23	63	209	63	209	y	0.23	73	249	73	249	y	0.21	96	372	96	372	y	0.23	62	202	62	202	y	0.18	80	354	80	354	y	0.18	55	259	55	259	y	0.20	86	341	86	341	y	0.19	52	220	52	220	y	0.16	39	204	39	204	y	0.18	59	263	59	263	y	0.24	61	197	61	197	y	0.18	58	256	58	256	y	ENSMUSG00000009646.14	Pla2g12b	chr10	protein_coding	phospholipase A2, group XIIB
novel_NIR_1815	chr10	59252335	59277578	+	59252335	59257194	3pMXE	ENSMUST00000162643.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.60	3	2	3	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.50	2	2	2	2	y	1.00	1	0	1	0	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000009646.14	Pla2g12b	chr10	protein_coding	phospholipase A2, group XIIB
novel_NIR_1816	chr10	59586369	59588125	+	59586369	59592528	A3SS	ENSMUST00000020311.13	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	12	0	12	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020111.16	Micu1	chr10	protein_coding	mitochondrial calcium uptake 1
novel_NIR_1817	chr10	59826729	59827079	-	59826729	59838240	A5SS	ENSMUST00000182116.8	novel	0.20	1	4	1	4	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.33	3	6	3	6	y	0.50	2	2	2	2	y	0.60	3	2	3	2	y	0.44	4	5	4	5	y	-	-	-	-	-	-	1.00	2	0	2	0	y	0.43	3	4	3	4	y	0.50	2	2	2	2	y	0.00	0	1	0	1	n	ENSMUSG00000020107.11	Anapc16	chr10	protein_coding	anaphase promoting complex subunit 16
novel_NIR_1818	chr10	59826729	59827079	-	59826729	59838778	A5SS	ENSMUST00000182912.2	novel	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.09	2	21	2	21	n	0.21	3	11	3	11	y	0.18	2	9	2	9	y	0.23	3	10	3	10	y	0.29	4	10	4	10	y	0.00	0	10	0	10	n	0.20	2	8	2	8	y	0.19	3	13	3	13	y	0.40	2	3	2	3	y	0.00	0	5	0	5	n	ENSMUSG00000020107.11	Anapc16	chr10	protein_coding	anaphase promoting complex subunit 16
novel_NIR_1819	chr10	59843648	59849418	+	59843648;59848381	59848284;59849418	ES	ENSMUST00000219778.2	novel	0.07	2	28.5	2	32;25	n	0.15	7	38.5	7	33;44	y	0.00	0	29.0	0	31;27	n	0.02	1	43.0	1	43;43	n	0.04	2	47.5	2	46;49	n	0.00	0	20.5	0	20;21	n	0.12	7	49.5	7	46;53	n	0.06	2	29.5	2	30;29	n	0.04	1	25.5	1	30;21	n	0.08	4	48.5	4	47;50	n	0.09	3	31.0	3	26;36	n	0.11	5	40.0	5	44;36	n	ENSMUSG00000044475.15	Ascc1	chr10	protein_coding	activating signal cointegrator 1 complex subunit 1
novel_NIR_1820	chr10	59849596	59867336	+	59849596	59861545	3pMXE	ENSMUST00000219778.2	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000044475.15	Ascc1	chr10	protein_coding	activating signal cointegrator 1 complex subunit 1
novel_NIR_1821	chr10	60131755	60134877	+	60134825	60134877	A5SS&ES	ENSMUST00000177779.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000004207.15	Psap	chr10	protein_coding	prosaposin
novel_NIR_1822	chr10	60982110	60983114	-	60982110	60983364	A5SS	ENSMUST00000092498.12	novel	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.00	0	15	0	15	n	0.22	2	7	2	7	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.14	1	6	1	6	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	ENSMUSG00000020097.15	Sgpl1	chr10	protein_coding	sphingosine phosphate lyase 1
novel_NIR_1823	chr10	60982110	60983114	-	60982110	60983395	A5SS	ENSMUST00000155919.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000020097.15	Sgpl1	chr10	protein_coding	sphingosine phosphate lyase 1
novel_NIR_1824	chr10	60982110	60983373	-	60982110	60983364	A5SS	ENSMUST00000092498.12	novel	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	15	0	15	n	0.22	2	7	2	7	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	ENSMUSG00000020097.15	Sgpl1	chr10	protein_coding	sphingosine phosphate lyase 1
novel_NIR_1825	chr10	60982110	60983373	-	60982110	60983395	A5SS	ENSMUST00000155919.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000020097.15	Sgpl1	chr10	protein_coding	sphingosine phosphate lyase 1
novel_NIR_1826	chr10	61184165	61184313	-	61184162	61184313	A3SS	ENSMUST00000020289.10	novel	0.25	2	6	2	6	y	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.50	2	2	2	2	y	0.09	1	10	1	10	n	0.00	0	5	0	5	n	0.30	3	7	3	7	y	1.00	5	0	5	0	y	0.17	1	5	1	5	n	0.25	3	9	3	9	y	0.00	0	4	0	4	n	0.33	2	4	2	4	y	ENSMUSG00000020092.10	Pald1	chr10	protein_coding	phosphatase domain containing, paladin 1
novel_NIR_1827	chr10	61311668	61362839	+	61311668;61318261	61318115;61362839	ES	ENSMUST00000049242.9	novel	0.00	0	4.0	0	3;5	n	0.00	0	7.0	0	6;8	n	0.33	5	10.0	5	9;11	y	0.00	0	12.0	0	8;16	n	0.06	1	16.5	1	14;19	n	0.17	2	10.0	2	5;15	y	0.15	4	23.0	4	20;26	y	0.10	1	9.0	1	8;10	n	0.27	3	8.0	3	10;6	y	0.00	0	9.0	0	10;8	n	0.00	0	7.5	0	4;11	n	0.00	0	6.5	0	4;9	n	ENSMUSG00000037151.9	Lrrc20	chr10	protein_coding	leucine rich repeat containing 20
novel_NIR_1828	chr10	61516192	61517882	+	61516192	61517878	A3SS	ENSMUST00000218474.2	novel	0.33	4	8	4	8	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	ENSMUSG00000020088.11	Sar1a	chr10	protein_coding	secretion associated Ras related GTPase 1A
novel_NIR_1829	chr10	61516192	61517882	+	61516192	61519840	A3SS	ENSMUST00000220372.2	novel	0.29	4	10	4	10	y	0.00	0	3	0	3	n	0.00	0	17	0	17	n	0.12	1	7	1	7	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	ENSMUSG00000020088.11	Sar1a	chr10	protein_coding	secretion associated Ras related GTPase 1A
novel_NIR_1830	chr10	61516192	61517882	+	61516192	61520013	A3SS	ENSMUST00000219506.2	novel	0.44	4	5	4	5	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	ENSMUSG00000020088.11	Sar1a	chr10	protein_coding	secretion associated Ras related GTPase 1A
novel_NIR_1831	chr10	61532521	61534028	+	61532521	61535222	A3SS	ENSMUST00000219768.2	novel	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.17	1	5	1	5	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.50	2	2	2	2	y	1.00	1	0	1	0	n	ENSMUSG00000020087.6	Tysnd1	chr10	protein_coding	trypsin domain containing 1
novel_NIR_1832	chr10	61570208	61571234	+	61570208	61571237	A3SS	ENSMUST00000105455.9	novel	0.15	15	85	15	85	y	0.09	7	70	7	70	n	0.13	12	77	12	77	n	0.04	2	50	2	50	n	0.11	16	133	16	133	n	0.14	11	68	11	68	n	0.09	13	131	13	131	n	0.02	1	48	1	48	n	0.03	2	56	2	56	n	0.09	12	123	12	123	n	0.10	8	74	8	74	n	0.10	10	88	10	88	n	ENSMUSG00000020085.16	Aifm2	chr10	protein_coding	apoptosis-inducing factor, mitochondrion-associated 2
novel_NIR_1833	chr10	61572537	61574066	+	61572537	61574807	A3SS	ENSMUST00000067857.11	novel	0.00	0	16	0	16	n	0.00	0	12	0	12	n	0.10	1	9	1	9	n	0.08	1	11	1	11	n	0.00	0	19	0	19	n	0.00	0	8	0	8	n	0.11	3	24	3	24	n	0.00	0	13	0	13	n	0.14	1	6	1	6	n	0.17	3	15	3	15	y	0.09	1	10	1	10	n	0.00	0	11	0	11	n	ENSMUSG00000020085.16	Aifm2	chr10	protein_coding	apoptosis-inducing factor, mitochondrion-associated 2
novel_NIR_1834	chr10	61572589	61574807	+	61572537	61574807	A5SS	ENSMUST00000067857.11	novel	0.00	0	16	0	16	n	0.08	1	12	1	12	n	0.10	1	9	1	9	n	0.00	0	11	0	11	n	0.00	0	19	0	19	n	0.00	0	8	0	8	n	0.00	0	24	0	24	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.17	2	10	2	10	y	0.00	0	11	0	11	n	ENSMUSG00000020085.16	Aifm2	chr10	protein_coding	apoptosis-inducing factor, mitochondrion-associated 2
novel_NIR_1835	chr10	61727043	61727289	-	61727043	61728735	A5SS	ENSMUST00000105453.8	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000058806.16	Col13a1	chr10	protein_coding	collagen, type XIII, alpha 1
novel_NIR_1836	chr10	62398496	62399015	-	62375835	62399015	A3SS	ENSMUST00000162759.6	novel	1.00	7	0	7	0	y	1.00	7	0	7	0	y	1.00	10	0	10	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	10	0	10	0	y	1.00	8	0	8	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	3	0	3	0	y	ENSMUSG00000036955.17	Kifbp	chr10	protein_coding	kinesin family binding protein
novel_NIR_1837	chr10	62398496	62399015	-	62395662	62399015	A3SS	ENSMUST00000159704.8	novel	0.14	7	44	7	44	n	0.16	7	37	7	37	y	0.22	10	35	10	35	y	0.02	1	57	1	57	n	0.04	2	52	2	52	n	0.32	10	21	10	21	y	0.13	8	53	8	53	n	0.07	2	26	2	26	n	0.11	2	17	2	17	n	0.02	1	45	1	45	n	0.08	5	54	5	54	n	0.06	3	47	3	47	n	ENSMUSG00000036955.17	Kifbp	chr10	protein_coding	kinesin family binding protein
novel_NIR_1838	chr10	62483422	62486339	-	62483422	62485398	5pMXE	ENSMUST00000218372.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000020076.8	Ddx50	chr10	protein_coding	DExD box helicase 50
novel_NIR_1839	chr10	62618071	62619013	-	62616390	62619013	A3SS	ENSMUST00000218229.2	novel	1.00	4	0	4	0	y	1.00	4	0	4	0	y	1.00	10	0	10	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	ENSMUSG00000020074.8	Ccar1	chr10	protein_coding	cell division cycle and apoptosis regulator 1
novel_NIR_1840	chr10	62618071	62619013	-	62616413	62619013	A3SS	ENSMUST00000020268.7	novel	0.19	4	17	4	17	y	0.22	4	14	4	14	y	0.27	10	27	10	27	y	0.10	3	28	3	28	n	0.04	1	24	1	24	n	0.00	0	21	0	21	n	0.03	1	29	1	29	n	0.05	1	19	1	19	n	0.10	2	19	2	19	n	0.08	2	23	2	23	n	0.11	2	17	2	17	n	0.07	2	25	2	25	n	ENSMUSG00000020074.8	Ccar1	chr10	protein_coding	cell division cycle and apoptosis regulator 1
novel_NIR_1841	chr10	62766215	62773197	+	62766215;62768561	62768498;62773197	ES	ENSMUST00000044977.10	novel	0.17	18	87.0	18	89;85	y	0.06	4	65.0	4	69;61	n	0.08	11	124.0	11	128;120	n	0.09	15	144.5	15	144;145	n	0.08	13	141.0	13	146;136	n	0.03	2	62.5	2	67;58	n	0.10	12	108.5	12	104;113	n	0.02	2	82.0	2	85;79	n	0.09	9	92.5	9	90;95	n	0.07	13	172.5	13	166;179	n	0.05	6	107.0	6	103;111	n	0.09	13	129.5	13	126;133	n	ENSMUSG00000071253.9	Slc25a16	chr10	protein_coding	solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16
novel_NIR_1842	chr10	62766215	62773197	+	62766215;62768570	62768498;62773197	ES	ENSMUST00000144459.2	novel	0.29	18	45.0	18	89;1	y	0.10	4	34.5	4	69;0	n	0.15	11	64.0	11	128;0	y	0.17	15	72.5	15	144;1	y	0.15	13	74.5	13	146;3	y	0.05	2	34.5	2	67;2	n	0.19	12	52.0	12	104;0	y	0.04	2	42.5	2	85;0	n	0.17	9	45.5	9	90;1	y	0.14	13	83.0	13	166;0	n	0.10	6	51.5	6	103;0	n	0.17	13	63.0	13	126;0	y	ENSMUSG00000071253.9	Slc25a16	chr10	protein_coding	solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16
novel_NIR_1843	chr10	62838059	62840393	+	62838059	62838725	3pMXE	ENSMUST00000131718.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000020070.19	Rufy2	chr10	protein_coding	RUN and FYVE domain-containing 2
novel_NIR_1844	chr10	62838059	62840393	+	62838059	62840436	A3SS	ENSMUST00000119567.8	novel	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.08	1	11	1	11	n	0.20	2	8	2	8	y	0.13	2	13	2	13	n	0.50	2	2	2	2	y	0.29	2	5	2	5	y	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.33	2	4	2	4	y	ENSMUSG00000020070.19	Rufy2	chr10	protein_coding	RUN and FYVE domain-containing 2
novel_NIR_1845	chr10	62853389	62853838	-	62853389	62853865	A5SS	ENSMUST00000118898.8	novel	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.19	3	13	3	13	y	0.00	0	23	0	23	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.04	1	24	1	24	n	0.00	0	7	0	7	n	0.00	0	20	0	20	n	0.00	0	22	0	22	n	0.00	0	17	0	17	n	0.00	0	18	0	18	n	ENSMUSG00000020069.17	Hnrnph3	chr10	protein_coding	heterogeneous nuclear ribonucleoprotein H3
novel_NIR_1846	chr10	62855306	62855994	-	62855306	62859499	A5SS	ENSMUST00000020263.14	novel	0.24	6	19	6	19	y	0.07	1	14	1	14	n	0.00	0	16	0	16	n	0.44	11	14	11	14	n	0.15	5	29	5	29	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.11	1	8	1	8	n	0.17	2	10	2	10	y	0.29	9	22	9	22	n	0.26	5	14	5	14	n	0.11	2	17	2	17	n	ENSMUSG00000020069.17	Hnrnph3	chr10	protein_coding	heterogeneous nuclear ribonucleoprotein H3
novel_NIR_1847	chr10	62855306	62859235	-	62855306	62859499	A5SS	ENSMUST00000020263.14	novel	0.00	0	19	0	19	n	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.00	0	14	0	14	n	0.00	0	29	0	29	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.11	1	8	1	8	n	0.00	0	10	0	10	n	0.00	0	22	0	22	n	0.18	3	14	3	14	y	0.00	0	17	0	17	n	ENSMUSG00000020069.17	Hnrnph3	chr10	protein_coding	heterogeneous nuclear ribonucleoprotein H3
novel_NIR_1848	chr10	62855306	62859417	-	62855306	62859499	A5SS	ENSMUST00000020263.14	novel	0.21	5	19	5	19	y	0.07	1	14	1	14	n	0.16	3	16	3	16	y	0.00	0	14	0	14	n	0.17	6	29	6	29	y	0.08	1	11	1	11	n	0.16	3	16	3	16	y	0.11	1	8	1	8	n	0.17	2	10	2	10	y	0.15	4	22	4	22	y	0.26	5	14	5	14	y	0.26	6	17	6	17	y	ENSMUSG00000020069.17	Hnrnph3	chr10	protein_coding	heterogeneous nuclear ribonucleoprotein H3
novel_NIR_1849	chr10	62893671	62897076	+	62896694	62897076	5pMXE	ENSMUST00000219687.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.43	3	4	3	4	y	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000112129.2	Pbld1	chr10	protein_coding	phenazine biosynthesis-like protein domain containing 1
novel_NIR_1850	chr10	62896603	62897076	+	62896694	62897076	A5SS	ENSMUST00000219687.2	novel	0.33	1	2	1	2	n	1.00	2	0	2	0	y	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.33	3	6	3	6	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000112129.2	Pbld1	chr10	protein_coding	phenazine biosynthesis-like protein domain containing 1
novel_NIR_1851	chr10	62896603	62897337	+	62896694	62897337	A5SS	ENSMUST00000219045.2	novel	0.31	4	9	4	9	y	0.33	2	4	2	4	y	0.44	4	5	4	5	y	0.64	7	4	7	4	y	0.44	12	15	12	15	y	0.50	2	2	2	2	y	0.12	2	14	2	14	n	0.67	6	3	6	3	y	0.50	4	4	4	4	y	0.00	0	11	0	11	n	0.33	1	2	1	2	n	0.27	3	8	3	8	y	ENSMUSG00000112129.2	Pbld1	chr10	protein_coding	phenazine biosynthesis-like protein domain containing 1
novel_NIR_1852	chr10	62896603	62897337	+	62897245	62897337	A5SS&ES	ENSMUST00000219687.2	novel	0.44	4	5	4	5	y	0.25	2	6	2	6	y	0.36	4	7	4	7	y	0.41	7	10	7	10	y	0.43	12	16	12	16	y	0.25	2	6	2	6	y	0.15	2	11	2	11	y	0.46	6	7	6	7	y	0.44	4	5	4	5	y	0.00	0	12	0	12	n	0.10	1	9	1	9	n	0.27	3	8	3	8	y	ENSMUSG00000112129.2	Pbld1	chr10	protein_coding	phenazine biosynthesis-like protein domain containing 1
novel_NIR_1853	chr10	62896612	62897337	+	62896694	62897337	A5SS	ENSMUST00000219045.2	novel	0.00	0	9	0	9	n	0.20	1	4	1	4	n	0.00	0	5	0	5	n	0.33	2	4	2	4	y	0.06	1	15	1	15	n	0.00	0	2	0	2	n	0.12	2	14	2	14	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.08	1	11	1	11	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	ENSMUSG00000112129.2	Pbld1	chr10	protein_coding	phenazine biosynthesis-like protein domain containing 1
novel_NIR_1854	chr10	62896612	62897337	+	62897245	62897337	A5SS&ES	ENSMUST00000219687.2	novel	0.00	0	5	0	5	n	0.14	1	6	1	6	n	0.00	0	7	0	7	n	0.17	2	10	2	10	y	0.06	1	16	1	16	n	0.00	0	6	0	6	n	0.15	2	11	2	11	y	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.08	1	12	1	12	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	ENSMUSG00000112129.2	Pbld1	chr10	protein_coding	phenazine biosynthesis-like protein domain containing 1
novel_NIR_1855	chr10	63081904	63099807	+	63081904	63085733	A3SS&ES	ENSMUST00000218533.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000020064.10	Herc4	chr10	protein_coding	hect domain and RLD 4
novel_NIR_1856	chr10	63081904	63099810	+	63081904	63085733	A3SS&ES	ENSMUST00000218533.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.80	4	1	4	1	y	0.83	5	1	5	1	y	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000020064.10	Herc4	chr10	protein_coding	hect domain and RLD 4
novel_NIR_1857	chr10	63150348	63151443	+	63150348	63152479	A3SS	ENSMUST00000219789.2	novel	0.00	0	1	0	1	n	0.00	0	7	0	7	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.30	3	7	3	7	y	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000020064.10	Herc4	chr10	protein_coding	hect domain and RLD 4
novel_NIR_1858	chr10	66865465	66870378	-	66865465;66869892	66869850;66870378	ES	ENSMUST00000218920.2	novel	1.00	1	0.0	1	0;0	n	1.00	1	0.0	1	0;0	n	0.86	3	0.5	3	0;1	y	1.00	6	0.0	6	0;0	y	1.00	7	0.0	7	0;0	y	1.00	4	0.0	4	0;0	y	0.91	5	0.5	5	0;1	y	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	1.00	4	0.0	4	0;0	y	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	ENSMUSG00000019873.9	Reep3	chr10	protein_coding	receptor accessory protein 3
novel_NIR_1859	chr10	66866223	66870378	-	66869892	66870378	A3SS&ES	ENSMUST00000218920.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000019873.9	Reep3	chr10	protein_coding	receptor accessory protein 3
novel_NIR_1860	chr10	66932497	66935996	+	66932497	66993686	A3SS	ENSMUST00000174062.8	novel	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.29	2	5	2	5	y	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000037876.18	Jmjd1c	chr10	protein_coding	jumonji domain containing 1C
novel_NIR_1861	chr10	66932497	66955671	+	66932497	66993686	A3SS	ENSMUST00000174062.8	novel	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000037876.18	Jmjd1c	chr10	protein_coding	jumonji domain containing 1C
novel_NIR_1862	chr10	66993850	67051049	+	66993850	67025515	3pMXE	ENSMUST00000174062.8	novel	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	23	0	23	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.29	2	5	2	5	y	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	ENSMUSG00000037876.18	Jmjd1c	chr10	protein_coding	jumonji domain containing 1C
novel_NIR_1863	chr10	66993850	67051049	+	66993850;67025628	67025515;67051049	ES	ENSMUST00000174317.8	novel	0.00	0	2.5	0	2;3	n	0.00	0	3.5	0	5;2	n	0.00	0	21.5	0	23;20	n	0.00	0	11.0	0	8;14	n	0.00	0	7.0	0	5;9	n	0.25	2	6.0	2	5;7	y	0.00	0	7.0	0	4;10	n	0.11	1	8.5	1	3;14	n	0.00	0	5.5	0	2;9	n	0.00	0	6.0	0	2;10	n	0.00	0	6.0	0	4;8	n	0.00	0	6.0	0	5;7	n	ENSMUSG00000037876.18	Jmjd1c	chr10	protein_coding	jumonji domain containing 1C
novel_NIR_1864	chr10	67022085	67025515	+	66993850	67025515	A5SS	ENSMUST00000174062.8	novel	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	23	0	23	n	0.00	0	8	0	8	n	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	ENSMUSG00000037876.18	Jmjd1c	chr10	protein_coding	jumonji domain containing 1C
novel_NIR_1865	chr10	67022085	67025515	+	67022090	67025515	A5SS	ENSMUST00000173661.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.12	1	7	1	7	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.17	1	5	1	5	n	ENSMUSG00000037876.18	Jmjd1c	chr10	protein_coding	jumonji domain containing 1C
novel_NIR_1866	chr10	67051154	67053817	+	67051154	67052762	A3SS&ES	ENSMUST00000174317.8	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.09	2	20	2	20	n	0.08	1	11	1	11	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.11	1	8	1	8	n	0.33	3	6	3	6	y	1.00	3	0	3	0	y	0.29	2	5	2	5	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	ENSMUSG00000037876.18	Jmjd1c	chr10	protein_coding	jumonji domain containing 1C
novel_NIR_1867	chr10	67051154	67053817	+	67051154;67052886	67052762;67053817	ES	ENSMUST00000174408.8	novel	0.00	0	2.0	0	4;0	n	0.00	0	0.5	0	1;0	n	0.10	2	18.0	2	20;16	n	0.10	1	9.0	1	11;7	n	0.00	0	3.5	0	4;3	n	0.00	0	6.0	0	6;6	n	0.11	1	8.5	1	8;9	n	0.30	3	7.0	3	6;8	y	0.55	3	2.5	3	0;5	y	0.24	2	6.5	2	5;8	y	0.00	0	1.5	0	1;2	n	0.00	0	4.5	0	5;4	n	ENSMUSG00000037876.18	Jmjd1c	chr10	protein_coding	jumonji domain containing 1C
novel_NIR_1868	chr10	67105925	67107001	-	67105925	67107179	A5SS	ENSMUST00000159002.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000075000.12	Nrbf2	chr10	protein_coding	nuclear receptor binding factor 2
novel_NIR_1869	chr10	67105925	67107184	-	67105925	67107179	A5SS	ENSMUST00000159002.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000075000.12	Nrbf2	chr10	protein_coding	nuclear receptor binding factor 2
novel_NIR_1870	chr10	67970936	67971592	-	67970936	67974476	A5SS	ENSMUST00000020106.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000019947.11	Arid5b	chr10	protein_coding	AT rich interactive domain 5B (MRF1-like)
novel_NIR_1871	chr10	67970936	67971592	-	67970936	68021856	A5SS	ENSMUST00000219238.2	novel	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.22	2	7	2	7	y	0.00	0	17	0	17	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	19	0	19	n	0.00	0	16	0	16	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	ENSMUSG00000019947.11	Arid5b	chr10	protein_coding	AT rich interactive domain 5B (MRF1-like)
novel_NIR_1872	chr10	68079059	68079172	-	68079059	68113760	A5SS	ENSMUST00000219238.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.17	1	5	1	5	n	0.27	4	11	4	11	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	ENSMUSG00000019947.11	Arid5b	chr10	protein_coding	AT rich interactive domain 5B (MRF1-like)
novel_NIR_1873	chr10	68156838	68160781	+	68149040	68160781	A5SS	ENSMUST00000218333.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000112275.2	Gm47078	chr10	lncRNA	predicted gene, 47078
novel_NIR_1874	chr10	68267153	68271685	-	68267153	68272110	A5SS	ENSMUST00000020103.9	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.00	0	6	0	6	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	ENSMUSG00000019945.11	Cabcoco1	chr10	protein_coding	ciliary associated calcium binding coiled-coil 1
novel_NIR_1875	chr10	68366056	68369677	+	68366038	68369677	A5SS	ENSMUST00000220037.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.11	1	8	1	8	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.27	4	11	4	11	y	0.00	0	11	0	11	n	0.00	0	2	0	2	n	ENSMUSG00000112793.2	Gm32872	chr10	lncRNA	predicted gene, 32872
novel_NIR_1876	chr10	68366095	68369677	+	68366038	68369677	A5SS	ENSMUST00000220037.2	novel	0.67	4	2	4	2	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.43	6	8	6	8	y	0.40	2	3	2	3	y	1.00	1	0	1	0	n	0.40	2	3	2	3	y	-	-	-	-	-	-	0.40	2	3	2	3	y	0.42	8	11	8	11	y	0.48	10	11	10	11	y	0.60	3	2	3	2	y	ENSMUSG00000112793.2	Gm32872	chr10	lncRNA	predicted gene, 32872
novel_NIR_1877	chr10	68987304	68991268	+	68987318	68991268	A5SS	ENSMUST00000167286.8	novel	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.48	11	12	11	12	y	0.40	2	3	2	3	y	0.19	3	13	3	13	y	0.27	4	11	4	11	y	0.10	1	9	1	9	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.14	1	6	1	6	n	0.09	1	10	1	10	n	ENSMUSG00000019944.15	Rhobtb1	chr10	protein_coding	Rho-related BTB domain containing 1
novel_NIR_1878	chr10	68991361	69010180	+	68991361	69051132	A3SS	ENSMUST00000167286.8	novel	0.06	1	17	1	17	n	0.00	0	3	0	3	n	0.05	1	21	1	21	n	0.08	1	11	1	11	n	0.00	0	19	0	19	n	0.00	0	15	0	15	n	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.20	2	8	2	8	y	0.00	0	9	0	9	n	ENSMUSG00000019944.15	Rhobtb1	chr10	protein_coding	Rho-related BTB domain containing 1
novel_NIR_1879	chr10	69085558	69086327	+	69085558	69097017	A3SS	ENSMUST00000168117.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000019944.15	Rhobtb1	chr10	protein_coding	Rho-related BTB domain containing 1
novel_NIR_1880	chr10	69085558	69086327	+	69085558	69105733	A3SS	ENSMUST00000167384.8	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000019944.15	Rhobtb1	chr10	protein_coding	Rho-related BTB domain containing 1
novel_NIR_1881	chr10	69086463	69102017	+	69097075	69102017	A5SS&ES	ENSMUST00000168117.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000019944.15	Rhobtb1	chr10	protein_coding	Rho-related BTB domain containing 1
novel_NIR_1882	chr10	69086463	69102017	+	69101622	69102017	5pMXE	ENSMUST00000169569.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000019944.15	Rhobtb1	chr10	protein_coding	Rho-related BTB domain containing 1
novel_NIR_1883	chr10	69121605	69122519	+	69121605	69122557	A3SS	ENSMUST00000165765.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000019944.15	Rhobtb1	chr10	protein_coding	Rho-related BTB domain containing 1
novel_NIR_1884	chr10	69121605	69122519	+	69121605	69125350	A3SS	ENSMUST00000163760.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000019944.15	Rhobtb1	chr10	protein_coding	Rho-related BTB domain containing 1
novel_NIR_1885	chr10	70828312	70828607	-	70812894	70828607	A3SS	ENSMUST00000219321.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000112745.2	Gm48025	chr10	lncRNA	predicted gene, 48025
novel_NIR_1886	chr10	70863797	70894708	-	70863797	70915020	A5SS	ENSMUST00000143791.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	14	0	14	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000014329.15	Bicc1	chr10	protein_coding	BicC family RNA binding protein 1
novel_NIR_1887	chr10	71007298	71007687	-	71007298	71007694	A5SS	ENSMUST00000218381.2	novel	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.29	2	5	2	5	y	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	ENSMUSG00000112366.2	C730027H18Rik	chr10	lncRNA	RIKEN cDNA C730027H18 gene
novel_NIR_1888	chr10	71007298	71007687	-	71007298	71017833	A5SS	ENSMUST00000219843.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000112366.2	C730027H18Rik	chr10	lncRNA	RIKEN cDNA C730027H18 gene
novel_NIR_1889	chr10	71007298	71013689	-	71007298	71017833	A5SS	ENSMUST00000219843.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000112366.2	C730027H18Rik	chr10	lncRNA	RIKEN cDNA C730027H18 gene
novel_NIR_1890	chr10	71007789	71013689	-	71007792	71013689	A3SS	ENSMUST00000218381.2	novel	0.15	12	69	12	69	y	0.13	14	97	14	97	n	0.05	6	105	6	105	n	0.18	14	64	14	64	y	0.15	19	110	19	110	y	0.09	7	70	7	70	n	0.14	17	104	17	104	n	0.12	10	71	10	71	n	0.14	14	85	14	85	n	0.13	18	124	18	124	n	0.13	14	97	14	97	n	0.08	13	150	13	150	n	ENSMUSG00000112366.2	C730027H18Rik	chr10	lncRNA	RIKEN cDNA C730027H18 gene
novel_NIR_1891	chr10	72492705	72492881	+	72492705	72492890	A3SS	ENSMUST00000219352.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000019923.15	Zwint	chr10	protein_coding	ZW10 interactor
novel_NIR_1892	chr10	72493220	72493391	+	72493220	72503731	A3SS	ENSMUST00000105431.8	novel	0.17	1	5	1	5	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	-	-	-	-	-	-	0.57	4	3	4	3	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	ENSMUSG00000019923.15	Zwint	chr10	protein_coding	ZW10 interactor
novel_NIR_1893	chr10	72493220	72509259	+	72493220	72503731	3pMXE	ENSMUST00000105431.8	novel	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.50	3	3	3	3	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	ENSMUSG00000019923.15	Zwint	chr10	protein_coding	ZW10 interactor
novel_NIR_1894	chr10	75103429	75109851	+	75103423	75109851	A5SS	ENSMUST00000218766.2	novel	0.06	1	17	1	17	n	0.00	0	10	0	10	n	0.00	0	31	0	31	n	0.00	0	10	0	10	n	0.03	1	30	1	30	n	0.00	0	14	0	14	n	0.11	2	16	2	16	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	30	0	30	n	0.00	0	15	0	15	n	0.30	3	7	3	7	y	ENSMUSG00000033444.15	Specc1l	chr10	protein_coding	sperm antigen with calponin homology and coiled-coil domains 1-like
novel_NIR_1895	chr10	7513989	7514636	-	7513989	7514632	A5SS	ENSMUST00000161428.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000019795.18	Pcmt1	chr10	protein_coding	protein-L-isoaspartate (D-aspartate) O-methyltransferase 1
novel_NIR_1896	chr10	75242961	75248601	+	75237851	75248601	A5SS	ENSMUST00000219052.2	novel	1.00	14	0	14	0	y	-	-	-	-	-	-	1.00	11	0	11	0	y	1.00	21	0	21	0	y	1.00	38	0	38	0	y	1.00	2	0	2	0	y	1.00	27	0	27	0	y	1.00	8	0	8	0	y	1.00	15	0	15	0	y	1.00	31	0	31	0	y	1.00	26	0	26	0	y	1.00	24	0	24	0	y	ENSMUSG00000033427.15	Upb1	chr10	protein_coding	ureidopropionase, beta
novel_NIR_1897	chr10	75242961	75248601	+	75246055	75248601	5pMXE	ENSMUST00000132629.2	novel	0.70	14	6	14	6	y	0.00	0	5	0	5	n	0.92	11	1	11	1	y	1.00	21	0	21	0	y	0.86	38	6	38	6	y	1.00	2	0	2	0	y	0.93	27	2	27	2	y	1.00	8	0	8	0	y	0.88	15	2	15	2	y	0.89	31	4	31	4	y	0.90	26	3	26	3	y	0.92	24	2	24	2	y	ENSMUSG00000033427.15	Upb1	chr10	protein_coding	ureidopropionase, beta
novel_NIR_1898	chr10	7524427	7524815	-	7524424	7524815	A3SS	ENSMUST00000161123.8	novel	0.78	7	2	7	2	y	0.11	1	8	1	8	n	0.44	4	5	4	5	y	0.44	4	5	4	5	y	0.29	5	12	5	12	y	0.80	8	2	8	2	y	0.50	5	5	5	5	y	0.50	5	5	5	5	y	0.00	0	5	0	5	n	0.47	7	8	7	8	y	0.27	3	8	3	8	y	0.00	0	11	0	11	n	ENSMUSG00000019795.18	Pcmt1	chr10	protein_coding	protein-L-isoaspartate (D-aspartate) O-methyltransferase 1
novel_NIR_1899	chr10	7524919	7525893	-	7524919	7527114	A5SS	ENSMUST00000159835.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000019795.18	Pcmt1	chr10	protein_coding	protein-L-isoaspartate (D-aspartate) O-methyltransferase 1
novel_NIR_1900	chr10	7524919	7525893	-	7524919	7556247	A5SS	ENSMUST00000159977.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000019795.18	Pcmt1	chr10	protein_coding	protein-L-isoaspartate (D-aspartate) O-methyltransferase 1
novel_NIR_1901	chr10	7524919	7525893	-	7524919	7556671	A5SS	ENSMUST00000162682.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	7	0	7	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000019795.18	Pcmt1	chr10	protein_coding	protein-L-isoaspartate (D-aspartate) O-methyltransferase 1
novel_NIR_1902	chr10	7524919	7528025	-	7524919	7527114	5pMXE	ENSMUST00000159835.8	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000019795.18	Pcmt1	chr10	protein_coding	protein-L-isoaspartate (D-aspartate) O-methyltransferase 1
novel_NIR_1903	chr10	7524919	7528025	-	7524919	7556247	A5SS	ENSMUST00000159977.2	novel	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000019795.18	Pcmt1	chr10	protein_coding	protein-L-isoaspartate (D-aspartate) O-methyltransferase 1
novel_NIR_1904	chr10	7524919	7528025	-	7524919	7556671	A5SS	ENSMUST00000162682.8	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.12	1	7	1	7	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000019795.18	Pcmt1	chr10	protein_coding	protein-L-isoaspartate (D-aspartate) O-methyltransferase 1
novel_NIR_1905	chr10	7524919	7539244	-	7524919	7527114	5pMXE	ENSMUST00000159835.8	novel	1.00	4	0	4	0	y	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	11	0	11	0	y	1.00	5	0	5	0	y	1.00	5	0	5	0	y	ENSMUSG00000019795.18	Pcmt1	chr10	protein_coding	protein-L-isoaspartate (D-aspartate) O-methyltransferase 1
novel_NIR_1906	chr10	7524919	7539244	-	7524919	7556247	A5SS	ENSMUST00000159977.2	novel	1.00	4	0	4	0	y	0.80	4	1	4	1	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	11	0	11	0	y	1.00	5	0	5	0	y	1.00	5	0	5	0	y	ENSMUSG00000019795.18	Pcmt1	chr10	protein_coding	protein-L-isoaspartate (D-aspartate) O-methyltransferase 1
novel_NIR_1907	chr10	7524919	7539244	-	7524919	7556671	A5SS	ENSMUST00000162682.8	novel	1.00	4	0	4	0	y	1.00	4	0	4	0	y	0.50	3	3	3	3	y	1.00	2	0	2	0	y	0.40	2	3	2	3	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.61	11	7	11	7	y	1.00	5	0	5	0	y	1.00	5	0	5	0	y	ENSMUSG00000019795.18	Pcmt1	chr10	protein_coding	protein-L-isoaspartate (D-aspartate) O-methyltransferase 1
novel_NIR_1908	chr10	75340877	75345426	-	75256630	75345426	A3SS	ENSMUST00000145890.8	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	ENSMUSG00000033416.16	Gucd1	chr10	protein_coding	guanylyl cyclase domain containing 1
novel_NIR_1909	chr10	75344449	75345426	-	75256630	75345426	A3SS	ENSMUST00000145890.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000033416.16	Gucd1	chr10	protein_coding	guanylyl cyclase domain containing 1
novel_NIR_1910	chr10	75344514	75345426	-	75256630	75345426	A3SS	ENSMUST00000145890.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033416.16	Gucd1	chr10	protein_coding	guanylyl cyclase domain containing 1
novel_NIR_1911	chr10	75344803	75345866	-	75256630	75345866	A3SS	ENSMUST00000153125.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033416.16	Gucd1	chr10	protein_coding	guanylyl cyclase domain containing 1
novel_NIR_1912	chr10	75345662	75345866	-	75256630	75345866	A3SS	ENSMUST00000153125.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000033416.16	Gucd1	chr10	protein_coding	guanylyl cyclase domain containing 1
novel_NIR_1913	chr10	75345662	75345866	-	75345538	75345866	A3SS	ENSMUST00000128419.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.40	2	3	2	3	y	0.43	3	4	3	4	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.33	2	4	2	4	y	ENSMUSG00000033416.16	Gucd1	chr10	protein_coding	guanylyl cyclase domain containing 1
novel_NIR_1914	chr10	75347120	75347887	-	75347120	75347737	A5SS	ENSMUST00000123505.2	novel	1.00	1	0	1	0	n	1.00	5	0	5	0	y	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.57	4	3	4	3	y	0.67	2	1	2	1	y	0.86	6	1	6	1	y	0.75	3	1	3	1	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.67	2	1	2	1	y	0.67	2	1	2	1	y	ENSMUSG00000033416.16	Gucd1	chr10	protein_coding	guanylyl cyclase domain containing 1
novel_NIR_1915	chr10	75347120	75347887	-	75347120	75347755	A5SS	ENSMUST00000136763.2	novel	0.17	1	5	1	5	n	0.71	5	2	5	2	y	0.00	0	6	0	6	n	0.33	2	4	2	4	y	0.33	4	8	4	8	y	0.50	2	2	2	2	y	0.60	6	4	6	4	y	1.00	3	0	3	0	y	0.67	2	1	2	1	y	0.14	1	6	1	6	n	0.40	2	3	2	3	y	0.25	2	6	2	6	y	ENSMUSG00000033416.16	Gucd1	chr10	protein_coding	guanylyl cyclase domain containing 1
novel_NIR_1916	chr10	75347990	75350616	-	75347990	75353575	A5SS	ENSMUST00000147269.8	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.60	3	2	3	2	y	-	-	-	-	-	-	0.00	0	5	0	5	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	ENSMUSG00000033416.16	Gucd1	chr10	protein_coding	guanylyl cyclase domain containing 1
novel_NIR_1917	chr10	75347990	75350616	-	75347990	75353694	A5SS	ENSMUST00000118936.8	novel	0.00	0	2	0	2	n	0.27	3	8	3	8	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.27	3	8	3	8	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000033416.16	Gucd1	chr10	protein_coding	guanylyl cyclase domain containing 1
novel_NIR_1918	chr10	75347990	75352690	-	75347990	75353575	A5SS	ENSMUST00000147269.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.29	2	5	2	5	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	ENSMUSG00000033416.16	Gucd1	chr10	protein_coding	guanylyl cyclase domain containing 1
novel_NIR_1919	chr10	75347990	75352690	-	75347990	75353694	A5SS	ENSMUST00000118936.8	novel	0.33	1	2	1	2	n	0.00	0	8	0	8	n	0.29	2	5	2	5	y	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000033416.16	Gucd1	chr10	protein_coding	guanylyl cyclase domain containing 1
novel_NIR_1920	chr10	75347990	75353528	-	75347990	75353575	A5SS	ENSMUST00000147269.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	ENSMUSG00000033416.16	Gucd1	chr10	protein_coding	guanylyl cyclase domain containing 1
novel_NIR_1921	chr10	75347990	75353528	-	75347990	75353694	A5SS	ENSMUST00000118936.8	novel	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.29	2	5	2	5	y	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000033416.16	Gucd1	chr10	protein_coding	guanylyl cyclase domain containing 1
novel_NIR_1922	chr10	75350679	75352988	-	75347976	75352988	A3SS	ENSMUST00000138122.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000033416.16	Gucd1	chr10	protein_coding	guanylyl cyclase domain containing 1
novel_NIR_1923	chr10	75353089	75353575	-	75347990	75353575	A3SS	ENSMUST00000147269.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.44	4	5	4	5	y	ENSMUSG00000033416.16	Gucd1	chr10	protein_coding	guanylyl cyclase domain containing 1
novel_NIR_1924	chr10	75496377	75520126	-	75494631	75520126	A3SS	ENSMUST00000001712.8	novel	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.00	0	23	0	23	n	0.00	0	12	0	12	n	0.00	0	22	0	22	n	0.15	2	11	2	11	y	0.00	0	25	0	25	n	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.00	0	20	0	20	n	0.00	0	17	0	17	n	0.00	0	14	0	14	n	ENSMUSG00000020196.11	Cabin1	chr10	protein_coding	calcineurin binding protein 1
novel_NIR_1925	chr10	75561222	75561383	-	75561219	75561383	A3SS	ENSMUST00000218878.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000020196.11	Cabin1	chr10	protein_coding	calcineurin binding protein 1
novel_NIR_1926	chr10	75561222	75561383	-	75561238	75561383	A3SS	ENSMUST00000001712.8	novel	0.00	0	10	0	10	n	0.14	1	6	1	6	n	0.00	0	19	0	19	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	15	0	15	n	0.22	4	14	4	14	y	0.00	0	8	0	8	n	0.00	0	17	0	17	n	0.07	1	14	1	14	n	0.00	0	12	0	12	n	ENSMUSG00000020196.11	Cabin1	chr10	protein_coding	calcineurin binding protein 1
novel_NIR_1927	chr10	75608747	75608830	-	75608747	75611705	A5SS	ENSMUST00000173512.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000092360.2	Gm20441	chr10	protein_coding	predicted gene 20441
novel_NIR_1928	chr10	75608747	75609040	-	75608747	75611705	A5SS	ENSMUST00000173512.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000092360.2	Gm20441	chr10	protein_coding	predicted gene 20441
novel_NIR_1929	chr10	75608747	75609046	-	75608747	75611705	A5SS	ENSMUST00000173512.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000092360.2	Gm20441	chr10	protein_coding	predicted gene 20441
novel_NIR_1930	chr10	75632964	75634235	-	75632964	75633514	5pMXE	ENSMUST00000139724.3	novel	0.00	0	7	0	7	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.00	0	18	0	18	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	20	0	20	n	0.00	0	7	0	7	n	0.00	0	24	0	24	n	0.00	0	21	0	21	n	0.00	0	25	0	25	n	0.43	12	16	12	16	y	ENSMUSG00000001663.11	Gstt1	chr10	protein_coding	glutathione S-transferase, theta 1
novel_NIR_1931	chr10	75657177	75658391	-	75657177	75658146	5pMXE	ENSMUST00000159241.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000009093.8	Gstt4	chr10	protein_coding	glutathione S-transferase, theta 4
novel_NIR_1932	chr10	75668422	75668495	-	75668428	75668495	A3SS	ENSMUST00000218500.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000033318.8	Gstt2	chr10	protein_coding	glutathione S-transferase, theta 2
novel_NIR_1933	chr10	75668575	75669486	-	75668666	75669486	A3SS	ENSMUST00000220195.2	novel	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.21	3	11	3	11	y	0.29	4	10	4	10	y	0.00	0	8	0	8	n	ENSMUSG00000033318.8	Gstt2	chr10	protein_coding	glutathione S-transferase, theta 2
novel_NIR_1934	chr10	75668608	75669486	-	75668666	75669486	A3SS	ENSMUST00000220195.2	novel	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.58	7	5	7	5	y	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	ENSMUSG00000033318.8	Gstt2	chr10	protein_coding	glutathione S-transferase, theta 2
novel_NIR_1935	chr10	75670236	75673049	-	75670715	75673049	A3SS	ENSMUST00000220440.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033318.8	Gstt2	chr10	protein_coding	glutathione S-transferase, theta 2
novel_NIR_1936	chr10	75729518	75729793	+	75729518	75730873	A3SS	ENSMUST00000218506.2	novel	0.40	2	3	2	3	y	0.00	0	5	0	5	n	0.17	2	10	2	10	y	0.00	0	1	0	1	n	0.50	2	2	2	2	n	0.00	0	17	0	17	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.57	4	3	4	3	y	0.50	3	3	3	3	y	0.22	2	7	2	7	n	-	-	-	-	-	-	ENSMUSG00000009092.6	Derl3	chr10	protein_coding	Der1-like domain family, member 3
novel_NIR_1937	chr10	75729518;75729904	75729793;75730873	+	75729518	75730873	cassetteExon	ENSMUST00000218506.2	novel	0.25	1.0	3	2;0	3	n	0.17	1.0	5	0;2	5	n	0.09	1.0	10	2;0	10	n	0.00	0.0	1	0;0	1	n	0.50	2.0	2	2;2	2	y	0.00	0.0	17	0;0	17	n	0.18	1.5	7	0;3	7	n	0.15	2.0	11	0;4	11	n	0.40	2.0	3	4;0	3	n	0.33	1.5	3	3;0	3	n	0.22	2.0	7	2;2	7	y	1.00	1.0	0	0;2	0	n	ENSMUSG00000009092.6	Derl3	chr10	protein_coding	Der1-like domain family, member 3
novel_NIR_1938	chr10	75729603	75730873	+	75729518	75730873	A5SS	ENSMUST00000218506.2	novel	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.52	11	10	11	10	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.06	1	17	1	17	n	0.22	2	7	2	7	y	0.00	0	11	0	11	n	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.00	0	7	0	7	n	1.00	1	0	1	0	n	ENSMUSG00000009092.6	Derl3	chr10	protein_coding	Der1-like domain family, member 3
novel_NIR_1939	chr10	75729904	75730873	+	75729518	75730873	A5SS	ENSMUST00000218506.2	novel	0.00	0	3	0	3	n	0.29	2	5	2	5	y	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.50	2	2	2	2	n	0.00	0	17	0	17	n	0.30	3	7	3	7	y	0.27	4	11	4	11	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.22	2	7	2	7	n	1.00	2	0	2	0	y	ENSMUSG00000009092.6	Derl3	chr10	protein_coding	Der1-like domain family, member 3
novel_NIR_1940	chr10	7573413	7575057	+	7573413	7577374	A3SS	ENSMUST00000165952.9	novel	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	25	0	25	n	0.00	0	11	0	11	n	0.00	0	28	0	28	n	0.00	0	17	0	17	n	0.05	1	18	1	18	n	0.00	0	15	0	15	n	0.00	0	11	0	11	n	0.18	3	14	3	14	y	0.00	0	14	0	14	n	0.00	0	17	0	17	n	ENSMUSG00000040021.14	Lats1	chr10	protein_coding	large tumor suppressor
novel_NIR_1941	chr10	75779124	75785016	+	75779124	75784977	A3SS	ENSMUST00000121151.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	ENSMUSG00000000903.4	Vpreb3	chr10	protein_coding	pre-B lymphocyte gene 3
novel_NIR_1942	chr10	7619930	7624540	+	7617329	7624540	A5SS	ENSMUST00000173400.8	novel	1.00	1	0	1	0	n	1.00	4	0	4	0	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000019794.14	Katna1	chr10	protein_coding	katanin p60 (ATPase-containing) subunit A1
novel_NIR_1943	chr10	76205913	76210454	-	76205913	76210685	A5SS	ENSMUST00000220395.2	novel	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.29	7	17	7	17	y	0.20	2	8	2	8	y	0.21	3	11	3	11	y	0.00	0	5	0	5	n	0.11	2	16	2	16	n	0.00	0	10	0	10	n	0.17	1	5	1	5	n	0.08	1	11	1	11	n	0.00	0	12	0	12	n	0.11	1	8	1	8	n	ENSMUSG00000001151.11	Pcnt	chr10	protein_coding	pericentrin (kendrin)
novel_NIR_1944	chr10	76239708	76244532	-	76239708;76240485	76240256;76244532	ES	ENSMUST00000220395.2	novel	0.00	0	2.0	0	4;0	n	0.00	0	1.0	0	1;1	n	0.00	0	2.5	0	2;3	n	0.00	0	7.0	0	6;8	n	0.00	0	7.0	0	5;9	n	0.00	0	3.0	0	3;3	n	0.00	0	7.5	0	8;7	n	0.00	0	2.0	0	1;3	n	0.00	0	1.0	0	1;1	n	0.00	0	5.5	0	7;4	n	0.00	0	6.0	0	5;7	n	0.53	4	3.5	4	5;2	y	ENSMUSG00000001151.11	Pcnt	chr10	protein_coding	pericentrin (kendrin)
novel_NIR_1945	chr10	76254403	76255812	-	76254400	76255812	A3SS	ENSMUST00000217838.2	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.20	2	8	2	8	y	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.12	1	7	1	7	n	ENSMUSG00000001151.11	Pcnt	chr10	protein_coding	pericentrin (kendrin)
novel_NIR_1946	chr10	76271731	76272260	-	76269874	76272260	A3SS	ENSMUST00000217838.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.25	2	6	2	6	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000001151.11	Pcnt	chr10	protein_coding	pericentrin (kendrin)
novel_NIR_1947	chr10	76317345	76317526	+	76317345	76318458	A3SS	ENSMUST00000220410.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000001150.8	Mcm3ap	chr10	protein_coding	minichromosome maintenance complex component 3 associated protein
novel_NIR_1948	chr10	76404588	76404737	-	76400639	76404737	A3SS	ENSMUST00000136382.2	novel	0.00	0	30	0	30	n	0.00	0	31	0	31	n	0.00	0	19	0	19	n	0.07	2	28	2	28	n	0.00	0	37	0	37	n	0.40	2	3	2	3	y	0.00	0	30	0	30	n	0.00	0	17	0	17	n	0.04	1	22	1	22	n	0.04	2	47	2	47	n	0.10	4	35	4	35	n	0.08	3	35	3	35	n	ENSMUSG00000085468.2	Gm15343	chr10	lncRNA	predicted gene 15343
novel_NIR_1949	chr10	76404838	76405166	-	76404866	76405166	A3SS	ENSMUST00000136382.2	novel	0.00	0	33	0	33	n	0.00	0	34	0	34	n	0.25	2	6	2	6	y	0.00	0	49	0	49	n	0.07	3	39	3	39	n	0.00	0	9	0	9	n	0.00	0	30	0	30	n	0.00	0	25	0	25	n	0.03	1	29	1	29	n	0.08	5	57	5	57	n	0.18	7	32	7	32	y	0.00	0	42	0	42	n	ENSMUSG00000085468.2	Gm15343	chr10	lncRNA	predicted gene 15343
novel_NIR_1950	chr10	76405304	76405465	-	76405304	76406037	A5SS	ENSMUST00000136382.2	novel	0.15	6	35	6	35	n	0.09	3	31	3	31	n	0.10	1	9	1	9	n	0.16	9	48	9	48	y	0.11	7	54	7	54	n	0.07	1	14	1	14	n	0.16	7	37	7	37	n	0.00	0	15	0	15	n	0.00	0	36	0	36	n	0.16	10	53	10	53	y	0.06	3	49	3	49	n	0.18	7	31	7	31	n	ENSMUSG00000085468.2	Gm15343	chr10	lncRNA	predicted gene 15343
novel_NIR_1951	chr10	7655126	7656197	-	7655126	7668272	A5SS	ENSMUST00000124447.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040006.14	Ginm1	chr10	protein_coding	glycoprotein integral membrane 1
novel_NIR_1952	chr10	76658657	76661694	-	76636748	76661694	A3SS	ENSMUST00000001148.11	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.29	2	5	2	5	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000001120.16	Pcbp3	chr10	protein_coding	poly(rC) binding protein 3
novel_NIR_1953	chr10	76661826	76692477	-	76661826	76683570	A5SS&ES	ENSMUST00000105411.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000001120.16	Pcbp3	chr10	protein_coding	poly(rC) binding protein 3
novel_NIR_1954	chr10	76661826	76692477	-	76661826	76728391	A5SS	ENSMUST00000001148.11	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.67	2	1	2	1	y	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000001120.16	Pcbp3	chr10	protein_coding	poly(rC) binding protein 3
novel_NIR_1955	chr10	7667358	7668272	-	7655126	7668272	A3SS	ENSMUST00000124447.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.79	11	3	11	3	y	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.71	5	2	5	2	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000040006.14	Ginm1	chr10	protein_coding	glycoprotein integral membrane 1
novel_NIR_1956	chr10	7677733;7677970	7677825;7680720	+	7677733	7680720	cassetteExon	ENSMUST00000015901.11	novel	0.00	0.0	24	0;0	24	n	0.33	6.0	12	3;9	12	y	0.11	4.0	32	1;7	32	n	0.13	2.5	17	2;3	17	n	0.07	3.0	40	2;4	40	n	0.03	0.5	17	1;0	17	n	0.08	2.5	30	3;2	30	n	0.05	1.0	20	1;1	20	n	0.06	1.5	24	0;3	24	n	0.07	3.0	38	5;1	38	n	0.03	0.5	15	0;1	15	n	0.06	2.0	32	0;4	32	n	ENSMUSG00000015757.11	Ppil4	chr10	protein_coding	peptidylprolyl isomerase (cyclophilin)-like 4
novel_NIR_1957	chr10	76878284	76878616	+	76878403	76878616	A5SS	ENSMUST00000144234.8	novel	0.16	3	16	3	16	y	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.08	1	12	1	12	n	0.06	2	33	2	33	n	0.00	0	11	0	11	n	0.00	0	19	0	19	n	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.21	3	11	3	11	y	0.00	0	12	0	12	n	0.00	0	15	0	15	n	ENSMUSG00000001436.16	Slc19a1	chr10	protein_coding	solute carrier family 19 (folate transporter), member 1
novel_NIR_1958	chr10	76878403	76878732	+	76874413	76878732	A5SS	ENSMUST00000130703.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000001436.16	Slc19a1	chr10	protein_coding	solute carrier family 19 (folate transporter), member 1
novel_NIR_1959	chr10	76878403	76878732	+	76878403	76878616	A3SS	ENSMUST00000144234.8	novel	0.00	0	16	0	16	n	0.07	1	13	1	13	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.06	2	33	2	33	n	0.15	2	11	2	11	y	0.00	0	19	0	19	n	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	ENSMUSG00000001436.16	Slc19a1	chr10	protein_coding	solute carrier family 19 (folate transporter), member 1
novel_NIR_1960	chr10	76894661	76894939	-	76894664	76894939	A3SS	ENSMUST00000081654.13	novel	0.24	248	783	248	783	y	0.23	272	929	272	929	y	0.25	180	533	180	533	y	0.25	286	851	286	851	y	0.23	371	1267	371	1267	y	0.24	135	429	135	429	y	0.23	305	1035	305	1035	y	0.23	187	641	187	641	y	0.26	264	738	264	738	y	0.24	351	1125	351	1125	y	0.24	283	887	283	887	y	0.27	384	1025	384	1025	y	ENSMUSG00000001435.16	Col18a1	chr10	protein_coding	collagen, type XVIII, alpha 1
novel_NIR_1961	chr10	76924790	76925409	-	76924790	76925034	5pMXE	ENSMUST00000156009.2	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.31	4	9	4	9	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.20	1	4	1	4	n	ENSMUSG00000001435.16	Col18a1	chr10	protein_coding	collagen, type XVIII, alpha 1
novel_NIR_1962	chr10	76932369	76941797	-	76932369	76948052	A5SS	ENSMUST00000072755.12	novel	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	18	0	18	n	0.00	0	11	0	11	n	0.00	0	23	0	23	n	0.00	0	23	0	23	n	0.00	0	13	0	13	n	0.00	0	17	0	17	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.17	2	10	2	10	y	ENSMUSG00000001435.16	Col18a1	chr10	protein_coding	collagen, type XVIII, alpha 1
novel_NIR_1963	chr10	76932369	76941797	-	76932369	77002124	A5SS	ENSMUST00000081654.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000001435.16	Col18a1	chr10	protein_coding	collagen, type XVIII, alpha 1
novel_NIR_1964	chr10	76932369	76948524	-	76932369	76948052	A5SS	ENSMUST00000072755.12	novel	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.10	2	18	2	18	n	0.00	0	11	0	11	n	0.15	4	23	4	23	y	0.08	2	23	2	23	n	0.00	0	13	0	13	n	0.00	0	17	0	17	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	ENSMUSG00000001435.16	Col18a1	chr10	protein_coding	collagen, type XVIII, alpha 1
novel_NIR_1965	chr10	76932369	76948524	-	76932369	77002124	A5SS	ENSMUST00000081654.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.67	4	2	4	2	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000001435.16	Col18a1	chr10	protein_coding	collagen, type XVIII, alpha 1
novel_NIR_1966	chr10	76932369	76952341	-	76932369	77002124	A5SS	ENSMUST00000081654.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.60	3	2	3	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000001435.16	Col18a1	chr10	protein_coding	collagen, type XVIII, alpha 1
novel_NIR_1967	chr10	77102927	77103023	+	77102927	77103018	A3SS	ENSMUST00000020493.9	novel	0.05	2	40	2	40	n	0.00	0	35	0	35	n	0.00	0	75	0	75	n	0.00	0	44	0	44	n	0.00	0	45	0	45	n	0.00	0	30	0	30	n	0.04	2	52	2	52	n	0.18	4	18	4	18	y	0.00	0	28	0	28	n	0.03	1	39	1	39	n	0.00	0	35	0	35	n	0.03	1	37	1	37	n	ENSMUSG00000020260.10	Pofut2	chr10	protein_coding	protein O-fucosyltransferase 2
novel_NIR_1968	chr10	77350248	77350543	-	77350248	77351326	A5SS	ENSMUST00000218414.2	novel	0.36	5	9	5	9	y	0.29	4	10	4	10	n	-	-	-	-	-	-	0.50	8	8	8	8	y	0.62	8	5	8	5	y	0.50	2	2	2	2	y	0.54	7	6	7	6	y	0.00	0	5	0	5	n	0.42	5	7	5	7	y	0.41	9	13	9	13	y	0.73	11	4	11	4	y	0.59	13	9	13	9	y	ENSMUSG00000032977.10	Fam207a	chr10	protein_coding	family with sequence similarity 207, member A
novel_NIR_1969	chr10	77350248	77351162	-	77350248	77351326	A5SS	ENSMUST00000218414.2	novel	0.00	0	9	0	9	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.25	2	6	2	6	y	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.20	1	4	1	4	n	0.00	0	9	0	9	n	ENSMUSG00000032977.10	Fam207a	chr10	protein_coding	family with sequence similarity 207, member A
novel_NIR_1970	chr10	77350248	77351347	-	77350248	77351326	A5SS	ENSMUST00000218414.2	novel	0.00	0	9	0	9	n	0.09	1	10	1	10	n	-	-	-	-	-	-	0.33	4	8	4	8	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.50	6	6	6	6	y	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.19	3	13	3	13	y	0.33	2	4	2	4	y	0.00	0	9	0	9	n	ENSMUSG00000032977.10	Fam207a	chr10	protein_coding	family with sequence similarity 207, member A
novel_NIR_1971	chr10	77423137	77428680	+	77417761	77428680	A5SS	ENSMUST00000162429.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000009291.14	Pttg1ip	chr10	protein_coding	pituitary tumor-transforming 1 interacting protein
novel_NIR_1972	chr10	77747239	77749639	-	77747239;77748513	77748412;77749639	ES	ENSMUST00000105401.9	novel	0.00	0	10.5	0	12;9	n	0.16	2	10.5	2	11;10	y	0.00	0	7.0	0	10;4	n	0.00	0	11.0	0	15;7	n	0.00	0	16.5	0	16;17	n	0.00	0	10.0	0	14;6	n	0.00	0	6.5	0	8;5	n	0.00	0	4.0	0	5;3	n	0.00	0	8.5	0	11;6	n	0.00	0	10.5	0	16;5	n	0.00	0	13.5	0	16;11	n	0.00	0	5.0	0	6;4	n	ENSMUSG00000009292.19	Trpm2	chr10	protein_coding	transient receptor potential cation channel, subfamily M, member 2
novel_NIR_1973	chr10	77750632	77752199	-	77750632	77753541	A5SS	ENSMUST00000105401.9	novel	0.62	5	3	5	3	y	0.20	2	8	2	8	y	0.00	0	2	0	2	n	0.50	2	2	2	2	y	1.00	2	0	2	0	y	0.80	4	1	4	1	y	0.00	0	4	0	4	n	0.17	1	5	1	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	4	0	4	n	ENSMUSG00000009292.19	Trpm2	chr10	protein_coding	transient receptor potential cation channel, subfamily M, member 2
novel_NIR_1974	chr10	77766488	77767910	-	77766488	77767969	A5SS	ENSMUST00000105401.9	novel	0.00	0	8	0	8	n	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	6	0	6	n	-	-	-	-	-	-	ENSMUSG00000009292.19	Trpm2	chr10	protein_coding	transient receptor potential cation channel, subfamily M, member 2
novel_NIR_1975	chr10	77819425	77819776	+	77819425	77819779	A3SS	ENSMUST00000116237.3	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000020284.17	Cfap410	chr10	protein_coding	cilia and flagella associated protein 410
novel_NIR_1976	chr10	77819425	77819776	+	77819425	77820873	A3SS	ENSMUST00000105398.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000020284.17	Cfap410	chr10	protein_coding	cilia and flagella associated protein 410
novel_NIR_1977	chr10	7800636	7808540	-	7800636	7808832	A5SS	ENSMUST00000147938.2	novel	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.06	1	16	1	16	n	0.25	2	6	2	6	y	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.50	2	2	2	2	y	0.00	0	11	0	11	n	0.25	1	3	1	3	n	0.18	2	9	2	9	y	ENSMUSG00000015755.17	Tab2	chr10	protein_coding	TGF-beta activated kinase 1/MAP3K7 binding protein 2
novel_NIR_1978	chr10	7800636	7828168	-	7800636	7808832	A5SS&ES	ENSMUST00000147938.2	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.14	1	6	1	6	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.07	1	13	1	13	n	0.17	2	10	2	10	y	0.00	0	2	0	2	n	0.15	2	11	2	11	y	0.00	0	3	0	3	n	0.10	1	9	1	9	n	ENSMUSG00000015755.17	Tab2	chr10	protein_coding	TGF-beta activated kinase 1/MAP3K7 binding protein 2
novel_NIR_1979	chr10	78056190	78058498	-	78056218	78058498	A3SS	ENSMUST00000000384.8	novel	0.00	0	20	0	20	n	0.00	0	18	0	18	n	0.00	0	52	0	52	n	0.00	0	28	0	28	n	0.00	0	39	0	39	n	0.00	0	26	0	26	n	0.00	0	27	0	27	n	0.00	0	37	0	37	n	0.00	0	18	0	18	n	0.00	0	27	0	27	n	0.18	2	9	2	9	y	0.00	0	38	0	38	n	ENSMUSG00000000374.9	Trappc10	chr10	protein_coding	trafficking protein particle complex 10
novel_NIR_1980	chr10	78085087	78109486	-	78085087	78091681	5pMXE	ENSMUST00000218886.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000112433.2	Gm30122	chr10	lncRNA	predicted gene, 30122
novel_NIR_1981	chr10	78085087	78109486	-	78085087	78098905	5pMXE	ENSMUST00000218143.2	novel	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000112433.2	Gm30122	chr10	lncRNA	predicted gene, 30122
novel_NIR_1982	chr10	78085087	78109513	-	78085087	78091681	5pMXE	ENSMUST00000218886.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000112433.2	Gm30122	chr10	lncRNA	predicted gene, 30122
novel_NIR_1983	chr10	78085087	78109513	-	78085087	78098905	5pMXE	ENSMUST00000218143.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000112433.2	Gm30122	chr10	lncRNA	predicted gene, 30122
novel_NIR_1984	chr10	7808668	7808832	-	7800636	7808832	A3SS	ENSMUST00000147938.2	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.18	2	9	2	9	y	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.08	1	11	1	11	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	ENSMUSG00000015755.17	Tab2	chr10	protein_coding	TGF-beta activated kinase 1/MAP3K7 binding protein 2
novel_NIR_1985	chr10	78123907	78133439	-	78123907	78131169	5pMXE	ENSMUST00000105387.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000001211.16	Agpat3	chr10	protein_coding	1-acylglycerol-3-phosphate O-acyltransferase 3
novel_NIR_1986	chr10	78123907	78133439	-	78123907	78133659	A5SS	ENSMUST00000105389.8	novel	0.00	0	17	0	17	n	0.00	0	18	0	18	n	0.00	0	122	0	122	n	0.00	0	18	0	18	n	0.03	1	34	1	34	n	0.03	1	35	1	35	n	0.00	0	58	0	58	n	0.05	2	36	2	36	n	0.33	2	4	2	4	y	0.00	0	30	0	30	n	0.00	0	33	0	33	n	0.08	1	11	1	11	n	ENSMUSG00000001211.16	Agpat3	chr10	protein_coding	1-acylglycerol-3-phosphate O-acyltransferase 3
novel_NIR_1987	chr10	78123907	78133439	-	78123907	78143111	A5SS	ENSMUST00000150828.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000001211.16	Agpat3	chr10	protein_coding	1-acylglycerol-3-phosphate O-acyltransferase 3
novel_NIR_1988	chr10	78123907	78133439	-	78123907	78156493	A5SS	ENSMUST00000139282.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000001211.16	Agpat3	chr10	protein_coding	1-acylglycerol-3-phosphate O-acyltransferase 3
novel_NIR_1989	chr10	78123907	78134048	-	78123907	78131169	5pMXE	ENSMUST00000105387.8	novel	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000001211.16	Agpat3	chr10	protein_coding	1-acylglycerol-3-phosphate O-acyltransferase 3
novel_NIR_1990	chr10	78123907	78134048	-	78123907	78143111	A5SS	ENSMUST00000150828.2	novel	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.50	1	1	1	1	n	0.50	2	2	2	2	y	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000001211.16	Agpat3	chr10	protein_coding	1-acylglycerol-3-phosphate O-acyltransferase 3
novel_NIR_1991	chr10	78123907	78134048	-	78123907	78156493	A5SS	ENSMUST00000139282.8	novel	1.00	2	0	2	0	y	1.00	3	0	3	0	y	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.75	3	1	3	1	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000001211.16	Agpat3	chr10	protein_coding	1-acylglycerol-3-phosphate O-acyltransferase 3
novel_NIR_1992	chr10	78165170	78175668	-	78165170	78188047	A5SS	ENSMUST00000001240.12	novel	0.06	2	30	2	30	n	0.08	3	33	3	33	n	0.00	0	60	0	60	n	0.08	4	46	4	46	n	0.02	2	106	2	106	n	0.04	3	74	3	74	n	0.00	0	42	0	42	n	0.03	1	32	1	32	n	0.25	9	27	9	27	y	0.09	5	48	5	48	n	0.00	0	22	0	22	n	0.04	2	50	2	50	n	ENSMUSG00000001211.16	Agpat3	chr10	protein_coding	1-acylglycerol-3-phosphate O-acyltransferase 3
novel_NIR_1993	chr10	78187545	78187835	-	78187545	78187637	5pMXE	ENSMUST00000105390.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	ENSMUSG00000001211.16	Agpat3	chr10	protein_coding	1-acylglycerol-3-phosphate O-acyltransferase 3
novel_NIR_1994	chr10	78187545	78187835	-	78187545	78187657	A5SS	ENSMUST00000105388.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.80	4	1	4	1	y	0.50	1	1	1	1	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000001211.16	Agpat3	chr10	protein_coding	1-acylglycerol-3-phosphate O-acyltransferase 3
novel_NIR_1995	chr10	78187545	78187867	-	78187545	78187637	5pMXE	ENSMUST00000105390.8	novel	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	8	0	8	0	y	1.00	8	0	8	0	y	1.00	9	0	9	0	y	0.78	7	2	7	2	y	1.00	9	0	9	0	y	0.83	5	1	5	1	y	0.94	16	1	16	1	y	0.83	5	1	5	1	y	0.88	7	1	7	1	y	ENSMUSG00000001211.16	Agpat3	chr10	protein_coding	1-acylglycerol-3-phosphate O-acyltransferase 3
novel_NIR_1996	chr10	78187545	78187867	-	78187545	78187657	A5SS	ENSMUST00000105388.8	novel	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	0.89	8	1	8	1	y	0.89	8	1	8	1	y	1.00	9	0	9	0	y	1.00	7	0	7	0	y	1.00	9	0	9	0	y	1.00	5	0	5	0	y	1.00	16	0	16	0	y	1.00	5	0	5	0	y	1.00	7	0	7	0	y	ENSMUSG00000001211.16	Agpat3	chr10	protein_coding	1-acylglycerol-3-phosphate O-acyltransferase 3
novel_NIR_1997	chr10	78187545	78187867	-	78187545	78188047	A5SS	ENSMUST00000138035.8	novel	0.10	5	45	5	45	n	0.04	2	54	2	54	n	0.08	5	59	5	59	n	0.11	8	63	8	63	n	0.08	8	94	8	94	n	0.13	9	62	9	62	n	0.12	7	52	7	52	n	0.20	9	36	9	36	y	0.11	5	40	5	40	n	0.18	16	74	16	74	y	0.07	5	65	5	65	n	0.10	7	63	7	63	n	ENSMUSG00000001211.16	Agpat3	chr10	protein_coding	1-acylglycerol-3-phosphate O-acyltransferase 3
novel_NIR_1998	chr10	78410511	78410921	+	78410402	78410921	A5SS	ENSMUST00000218061.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	3	0	3	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000032763.12	Ilvbl	chr10	protein_coding	ilvB (bacterial acetolactate synthase)-like
novel_NIR_1999	chr10	78410511	78410921	+	78410499	78410921	A5SS	ENSMUST00000105384.5	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.43	3	4	3	4	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	ENSMUSG00000032763.12	Ilvbl	chr10	protein_coding	ilvB (bacterial acetolactate synthase)-like
novel_NIR_2000	chr10	78410511	78410921	+	78410668	78410921	A5SS	ENSMUST00000218787.2	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.14	1	6	1	6	n	0.43	3	4	3	4	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	ENSMUSG00000032763.12	Ilvbl	chr10	protein_coding	ilvB (bacterial acetolactate synthase)-like
novel_NIR_2001	chr10	78410511	78410921	+	78410829	78410921	5pMXE	ENSMUST00000218763.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000032763.12	Ilvbl	chr10	protein_coding	ilvB (bacterial acetolactate synthase)-like
novel_NIR_2002	chr10	78903881	78904468	-	78903885	78904468	A3SS	ENSMUST00000039271.7	novel	0.12	1	7	1	7	n	0.00	0	4	0	4	n	0.38	3	5	3	5	y	0.00	0	7	0	7	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.10	1	9	1	9	n	0.50	2	2	2	2	y	0.25	2	6	2	6	y	ENSMUSG00000060301.7	2610008E11Rik	chr10	protein_coding	RIKEN cDNA 2610008E11 gene
novel_NIR_2003	chr10	79505831	79511234	+	79505885	79511234	A5SS	ENSMUST00000219585.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000020308.8	Tpgs1	chr10	protein_coding	tubulin polyglutamylase complex subunit 1
novel_NIR_2004	chr10	79505831	79511234	+	79505975	79511234	A5SS	ENSMUST00000220175.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020308.8	Tpgs1	chr10	protein_coding	tubulin polyglutamylase complex subunit 1
novel_NIR_2005	chr10	79520931	79521014	+	79520936	79521014	A5SS	ENSMUST00000219074.2	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000020307.16	Cdc34	chr10	protein_coding	cell division cycle 34
novel_NIR_2006	chr10	79520936	79523687	+	79520936	79521014	3pMXE	ENSMUST00000219074.2	novel	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020307.16	Cdc34	chr10	protein_coding	cell division cycle 34
novel_NIR_2007	chr10	79540418	79545531	+	79540418	79544531	A3SS&ES	ENSMUST00000067036.12	novel	0.00	0	6	0	6	n	0.63	24	14	24	14	y	0.00	0	9	0	9	n	0.00	0	26	0	26	n	0.13	4	26	4	26	n	0.29	4	10	4	10	y	0.50	16	16	16	16	y	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	19	0	19	n	0.00	0	20	0	20	n	0.00	0	10	0	10	n	ENSMUSG00000023175.16	Bsg	chr10	protein_coding	basigin
novel_NIR_2008	chr10	79546236	79546607	+	79546236	79546459	3pMXE	ENSMUST00000179201.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	9	0	9	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.93	39	3	39	3	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023175.16	Bsg	chr10	protein_coding	basigin
novel_NIR_2009	chr10	79546586	79546674	+	79546558	79546674	A5SS	ENSMUST00000178383.8	novel	0.00	0	12	0	12	n	0.00	0	22	0	22	n	0.00	0	11	0	11	n	0.45	9	11	9	11	y	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.44	8	10	8	10	y	-	-	-	-	-	-	0.00	0	18	0	18	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	ENSMUSG00000023175.16	Bsg	chr10	protein_coding	basigin
novel_NIR_2010	chr10	79596916	79597045	-	79596916	79597399	A5SS	ENSMUST00000218770.2	novel	0.50	3	3	3	3	y	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.38	3	5	3	5	y	0.40	2	3	2	3	y	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	ENSMUSG00000035890.10	Rnf126	chr10	protein_coding	ring finger protein 126
novel_NIR_2011	chr10	79598539	79601856	-	79598539	79602710	A5SS	ENSMUST00000218770.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000035890.10	Rnf126	chr10	protein_coding	ring finger protein 126
novel_NIR_2012	chr10	79692368	79693018	+	79692368	79693413	A3SS	ENSMUST00000168216.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000006498.17	Ptbp1	chr10	protein_coding	polypyrimidine tract binding protein 1
novel_NIR_2013	chr10	79694658	79694947	+	79694658	79694906	A3SS	ENSMUST00000095457.11	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	3	6	3	6	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000006498.17	Ptbp1	chr10	protein_coding	polypyrimidine tract binding protein 1
novel_NIR_2014	chr10	79743490	79744340	-	79743490	79744052	5pMXE	ENSMUST00000166964.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	10	0	10	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000013833.16	Med16	chr10	protein_coding	mediator complex subunit 16
novel_NIR_2015	chr10	79743490	79744340	-	79743490	79744155	A5SS	ENSMUST00000163125.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	10	0	10	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000013833.16	Med16	chr10	protein_coding	mediator complex subunit 16
novel_NIR_2016	chr10	79743490	79744340	-	79743490	79744652	A5SS	ENSMUST00000165684.8	novel	0.00	0	39	0	39	n	0.06	1	15	1	15	n	0.00	0	31	0	31	n	0.07	2	25	2	25	n	0.20	10	39	10	39	y	0.00	0	17	0	17	n	0.03	1	35	1	35	n	0.17	2	10	2	10	y	0.00	0	11	0	11	n	0.00	0	24	0	24	n	0.09	2	21	2	21	n	0.00	0	42	0	42	n	ENSMUSG00000013833.16	Med16	chr10	protein_coding	mediator complex subunit 16
novel_NIR_2017	chr10	79749180	79749506	-	79749180	79752657	A5SS	ENSMUST00000218970.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000035781.15	R3hdm4	chr10	protein_coding	R3H domain containing 4
novel_NIR_2018	chr10	79814258	79814382	-	79814309	79814382	A3SS	ENSMUST00000132080.2	novel	0.07	12	154	12	154	n	0.10	17	152	17	152	n	0.08	24	259	24	259	n	0.17	30	150	30	150	y	0.13	36	251	36	251	n	0.15	21	118	21	118	y	0.11	29	240	29	240	n	0.06	10	157	10	157	n	0.10	16	143	16	143	n	0.16	40	214	40	214	y	0.14	26	163	26	163	n	0.11	22	176	22	176	n	ENSMUSG00000013858.15	Tmem259	chr10	protein_coding	transmembrane protein 259
novel_NIR_2019	chr10	79828173	79828281	+	79828173	79828277	A3SS	ENSMUST00000004784.11	novel	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.19	3	13	3	13	y	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	ENSMUSG00000004665.11	Cnn2	chr10	protein_coding	calponin 2
novel_NIR_2020	chr10	79844400	79844497	+	79844405	79844497	A5SS	ENSMUST00000132517.8	novel	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.20	2	8	2	8	y	0.33	1	2	1	2	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	ENSMUSG00000035722.16	Abca7	chr10	protein_coding	ATP-binding cassette, sub-family A (ABC1), member 7
novel_NIR_2021	chr10	79847232	79847749	+	79847232;79847676	79847547;79847749	ES	ENSMUST00000132517.8	novel	0.00	0	5.0	0	4;6	n	0.00	0	7.5	0	7;8	n	0.00	0	17.0	0	16;18	n	0.18	1	4.5	1	4;5	n	0.00	0	15.0	0	17;13	n	0.00	0	9.0	0	12;6	n	0.00	0	14.0	0	11;17	n	0.00	0	7.0	0	6;8	n	0.00	0	7.0	0	9;5	n	0.20	3	12.0	3	13;11	y	0.00	0	7.0	0	9;5	n	0.00	0	9.0	0	10;8	n	ENSMUSG00000035722.16	Abca7	chr10	protein_coding	ATP-binding cassette, sub-family A (ABC1), member 7
novel_NIR_2022	chr10	79850390	79850781	+	79850394	79850781	A5SS	ENSMUST00000132517.8	novel	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.06	1	17	1	17	n	0.00	0	14	0	14	n	0.06	1	16	1	16	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.20	2	8	2	8	y	0.00	0	7	0	7	n	ENSMUSG00000035722.16	Abca7	chr10	protein_coding	ATP-binding cassette, sub-family A (ABC1), member 7
novel_NIR_2023	chr10	79862584	79862657	+	79862568	79862657	A5SS	ENSMUST00000099501.10	novel	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.11	1	8	1	8	n	0.08	1	12	1	12	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.33	1	2	1	2	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.22	2	7	2	7	y	0.00	0	7	0	7	n	ENSMUSG00000035697.15	Arhgap45	chr10	protein_coding	Rho GTPase activating protein 45
novel_NIR_2024	chr10	79894539	79894639	-	79894566	79894639	A3SS	ENSMUST00000219260.2	novel	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	26	0	26	n	0.10	1	9	1	9	n	0.20	2	8	2	8	y	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	-	-	-	-	-	-	ENSMUSG00000035673.11	Sbno2	chr10	protein_coding	strawberry notch 2
novel_NIR_2025	chr10	79905885	79906788	-	79905885	79918449	A5SS	ENSMUST00000218462.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035673.11	Sbno2	chr10	protein_coding	strawberry notch 2
novel_NIR_2026	chr10	79952550	79952676	+	79952550	79960636	A3SS	ENSMUST00000105371.9	novel	0.00	0	9	0	9	n	0.14	1	6	1	6	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.00	0	21	0	21	n	0.50	2	2	2	2	y	0.00	0	11	0	11	n	0.10	1	9	1	9	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.20	3	12	3	12	y	0.20	3	12	3	12	y	ENSMUSG00000003068.18	Stk11	chr10	protein_coding	serine/threonine kinase 11
novel_NIR_2027	chr10	79952550	79953332	+	79952550	79960636	A3SS	ENSMUST00000105371.9	novel	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.00	0	21	0	21	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.33	2	4	2	4	y	0.00	0	12	0	12	n	0.00	0	12	0	12	n	ENSMUSG00000003068.18	Stk11	chr10	protein_coding	serine/threonine kinase 11
novel_NIR_2028	chr10	79952741;79953380	79953332;79953499	+	79952741	79953499	cassetteExon	ENSMUST00000128992.2	novel	1.00	0.5	0	1;0	0	n	-	-	-	-	-	-	0.00	0.0	3	0;0	3	n	0.17	1.0	5	0;2	5	n	1.00	0.5	0	0;1	0	n	1.00	0.5	0	0;1	0	n	0.00	0.0	1	0;0	1	n	0.00	0.0	1	0;0	1	n	-	-	-	-	-	-	0.56	2.5	2	2;3	2	y	0.43	1.5	2	1;2	2	n	1.00	0.5	0	0;1	0	n	ENSMUSG00000003068.18	Stk11	chr10	protein_coding	serine/threonine kinase 11
novel_NIR_2029	chr10	79953380	79953499	+	79952741	79953499	A5SS	ENSMUST00000128992.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.29	2	5	2	5	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.60	3	2	3	2	n	0.50	2	2	2	2	n	1.00	1	0	1	0	n	ENSMUSG00000003068.18	Stk11	chr10	protein_coding	serine/threonine kinase 11
novel_NIR_2030	chr10	79953380	79960636	+	79952550	79960636	A5SS	ENSMUST00000105371.9	novel	0.10	1	9	1	9	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.00	0	21	0	21	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.18	2	9	2	9	y	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	ENSMUSG00000003068.18	Stk11	chr10	protein_coding	serine/threonine kinase 11
novel_NIR_2031	chr10	79963934	79965744	+	79963934	79964225	A3SS&ES	ENSMUST00000144883.8	novel	0.46	6	7	6	7	y	0.47	8	9	8	9	y	0.40	2	3	2	3	y	0.00	0	5	0	5	n	0.60	9	6	9	6	y	0.22	2	7	2	7	y	0.82	9	2	9	2	y	0.00	0	2	0	2	n	0.78	7	2	7	2	y	0.73	8	3	8	3	y	0.64	7	4	7	4	y	0.64	9	5	9	5	y	ENSMUSG00000003068.18	Stk11	chr10	protein_coding	serine/threonine kinase 11
novel_NIR_2032	chr10	79965534	79965744	+	79965534	79965739	A3SS	ENSMUST00000144883.8	novel	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.50	4	4	4	4	y	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	ENSMUSG00000003068.18	Stk11	chr10	protein_coding	serine/threonine kinase 11
novel_NIR_2033	chr10	79977204	79977875	+	79976380	79977875	A5SS	ENSMUST00000150347.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000003072.16	Atp5d	chr10	protein_coding	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit
novel_NIR_2034	chr10	79977204	79977875	+	79977500	79977875	5pMXE	ENSMUST00000105367.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000003072.16	Atp5d	chr10	protein_coding	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit
novel_NIR_2035	chr10	79979819	79981261	+	79979819	79981257	A3SS	ENSMUST00000105366.2	novel	-	-	-	-	-	-	0.78	38	11	38	11	y	0.12	2	14	2	14	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.53	10	9	10	9	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.50	6	6	6	6	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000003072.16	Atp5d	chr10	protein_coding	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit
novel_NIR_2036	chr10	79987557	79989426	+	79987557	79989351	A3SS	ENSMUST00000124179.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035621.14	Midn	chr10	protein_coding	midnolin
novel_NIR_2037	chr10	79989967	79990168	+	79989967	79990165	A3SS	ENSMUST00000099492.10	novel	0.46	24	28	24	28	y	0.38	30	50	30	50	y	0.31	30	66	30	66	y	0.38	25	41	25	41	y	0.31	22	48	22	48	y	0.33	16	32	16	32	y	0.32	25	52	25	52	y	0.40	21	32	21	32	y	0.26	22	62	22	62	y	0.32	29	62	29	62	y	0.33	19	39	19	39	y	0.23	17	57	17	57	y	ENSMUSG00000035621.14	Midn	chr10	protein_coding	midnolin
novel_NIR_2038	chr10	80007829	80008248	+	80006598	80008248	A5SS	ENSMUST00000054666.7	novel	0.07	1	13	1	13	n	0.25	5	15	5	15	y	0.00	0	16	0	16	n	0.22	2	7	2	7	y	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.50	4	4	4	4	y	0.40	4	6	4	6	y	0.05	1	19	1	19	n	0.14	2	12	2	12	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	ENSMUSG00000045193.14	Cirbp	chr10	protein_coding	cold inducible RNA binding protein
novel_NIR_2039	chr10	80097087	80109841	+	80097409	80109841	5pMXE	ENSMUST00000156935.8	novel	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.33	2	4	2	4	y	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.07	1	14	1	14	n	0.00	0	7	0	7	n	0.18	3	14	3	14	y	ENSMUSG00000069565.13	Dazap1	chr10	protein_coding	DAZ associated protein 1
novel_NIR_2040	chr10	80097409	80097959	+	80097409	80109841	A3SS	ENSMUST00000156935.8	novel	0.25	1	3	1	3	n	0.36	4	7	4	7	y	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.50	4	4	4	4	y	0.00	0	6	0	6	n	0.25	2	6	2	6	y	0.09	1	10	1	10	n	0.30	6	14	6	14	y	0.30	3	7	3	7	y	0.00	0	14	0	14	n	ENSMUSG00000069565.13	Dazap1	chr10	protein_coding	DAZ associated protein 1
novel_NIR_2041	chr10	80098496	80109841	+	80097409	80109841	A5SS	ENSMUST00000156935.8	novel	0.00	0	3	0	3	n	0.12	1	7	1	7	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.22	2	7	2	7	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	ENSMUSG00000069565.13	Dazap1	chr10	protein_coding	DAZ associated protein 1
novel_NIR_2042	chr10	80107845	80109841	+	80097409	80109841	A5SS	ENSMUST00000156935.8	novel	0.25	1	3	1	3	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.30	3	7	3	7	y	0.00	0	4	0	4	n	0.25	2	6	2	6	y	0.25	2	6	2	6	y	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.36	4	7	4	7	y	0.07	1	14	1	14	n	ENSMUSG00000069565.13	Dazap1	chr10	protein_coding	DAZ associated protein 1
novel_NIR_2043	chr10	80109236	80109841	+	80097409	80109841	A5SS	ENSMUST00000156935.8	novel	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.22	2	7	2	7	y	0.00	0	14	0	14	n	ENSMUSG00000069565.13	Dazap1	chr10	protein_coding	DAZ associated protein 1
novel_NIR_2044	chr10	80114115	80118858	+	80114115	80116763	3pMXE	ENSMUST00000156935.8	novel	0.16	12	62	12	62	y	0.16	12	64	12	64	y	0.18	21	94	21	94	y	0.10	9	81	9	81	n	0.13	17	113	17	113	n	0.13	9	61	9	61	n	0.14	17	102	17	102	n	0.08	5	57	5	57	n	0.15	11	61	11	61	y	0.23	30	100	30	100	y	0.20	20	79	20	79	y	0.07	8	106	8	106	n	ENSMUSG00000069565.13	Dazap1	chr10	protein_coding	DAZ associated protein 1
novel_NIR_2045	chr10	80114115	80118858	+	80114115;80116845	80116763;80118858	ES	ENSMUST00000105362.8	novel	0.14	12	75.0	12	62;88	n	0.13	12	80.5	12	64;97	n	0.18	21	96.0	21	94;98	y	0.10	9	77.5	9	81;74	n	0.12	17	123.0	17	113;133	n	0.13	9	59.0	9	61;57	n	0.14	17	105.0	17	102;108	n	0.08	5	60.5	5	57;64	n	0.14	11	68.5	11	61;76	n	0.22	30	105.5	30	100;111	y	0.20	20	80.0	20	79;81	y	0.07	8	100.0	8	106;94	n	ENSMUSG00000069565.13	Dazap1	chr10	protein_coding	DAZ associated protein 1
novel_NIR_2046	chr10	80114115	80118858	+	80116845	80118858	5pMXE	ENSMUST00000138032.8	novel	0.12	12	88	12	88	n	0.11	12	97	12	97	n	0.18	21	98	21	98	y	0.11	9	74	9	74	n	0.11	17	133	17	133	n	0.14	9	57	9	57	n	0.14	17	108	17	108	n	0.07	5	64	5	64	n	0.13	11	76	11	76	n	0.21	30	111	30	111	y	0.20	20	81	20	81	y	0.08	8	94	8	94	n	ENSMUSG00000069565.13	Dazap1	chr10	protein_coding	DAZ associated protein 1
novel_NIR_2047	chr10	80157755	80157852	-	80157755	80157915	A5SS	ENSMUST00000130521.2	novel	0.00	0	7	0	7	n	0.20	2	8	2	8	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.33	3	6	3	6	y	ENSMUSG00000020131.15	Pcsk4	chr10	protein_coding	proprotein convertase subtilisin/kexin type 4
novel_NIR_2048	chr10	80157755	80157970	-	80157755	80157915	A5SS	ENSMUST00000130521.2	novel	0.12	1	7	1	7	n	0.43	6	8	6	8	y	0.57	4	3	4	3	y	0.38	3	5	3	5	y	0.12	2	14	2	14	n	0.50	2	2	2	2	y	0.35	6	11	6	11	y	0.75	6	2	6	2	y	0.40	4	6	4	6	y	0.48	12	13	12	13	y	0.31	4	9	4	9	y	0.33	3	6	3	6	y	ENSMUSG00000020131.15	Pcsk4	chr10	protein_coding	proprotein convertase subtilisin/kexin type 4
novel_NIR_2049	chr10	80157785	80157970	-	80157785	80157915	A5SS	ENSMUST00000137177.8	novel	0.43	10	13	10	13	y	0.28	10	26	10	26	y	0.50	6	6	6	6	y	0.44	12	15	12	15	y	0.44	18	23	18	23	y	0.18	4	18	4	18	y	0.38	26	42	26	42	y	0.21	6	22	6	22	y	0.35	9	17	9	17	y	0.46	28	33	28	33	y	0.35	12	22	12	22	y	0.33	12	24	12	24	y	ENSMUSG00000020131.15	Pcsk4	chr10	protein_coding	proprotein convertase subtilisin/kexin type 4
novel_NIR_2050	chr10	80159009	80159218	-	80159009	80159317	A5SS	ENSMUST00000137177.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.17	1	5	1	5	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.50	2	2	2	2	y	0.00	0	3	0	3	n	ENSMUSG00000020131.15	Pcsk4	chr10	protein_coding	proprotein convertase subtilisin/kexin type 4
novel_NIR_2051	chr10	80159009	80159507	-	80159009;80159434	80159317;80159507	ES	ENSMUST00000137177.8	novel	0.00	0	4.0	0	0;8	n	0.00	0	3.5	0	0;7	n	0.00	0	2.5	0	0;5	n	0.15	1	5.5	1	0;11	n	0.21	3	11.0	3	5;17	y	0.25	1	3.0	1	1;5	n	0.00	0	8.5	0	4;13	n	0.25	1	3.0	1	0;6	n	0.50	3	3.0	3	2;4	y	0.00	0	4.0	0	0;8	n	0.00	0	4.0	0	2;6	n	0.00	0	8.0	0	3;13	n	ENSMUSG00000020131.15	Pcsk4	chr10	protein_coding	proprotein convertase subtilisin/kexin type 4
novel_NIR_2052	chr10	80159040	80159507	-	80159434	80159507	A3SS&ES	ENSMUST00000137177.8	novel	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.15	2	11	2	11	y	0.00	0	17	0	17	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.14	1	6	1	6	n	0.00	0	13	0	13	n	ENSMUSG00000020131.15	Pcsk4	chr10	protein_coding	proprotein convertase subtilisin/kexin type 4
novel_NIR_2053	chr10	80159434	80159688	-	80159434;80159610	80159507;80159688	ES	ENSMUST00000137177.8	novel	0.36	5	9.0	5	8;10	y	0.22	3	10.5	3	7;14	y	0.27	2	5.5	2	5;6	y	0.08	1	11.0	1	11;11	n	0.34	10	19.0	10	17;21	y	0.12	1	7.5	1	5;10	n	0.25	4	12.0	4	13;11	y	0.00	0	9.0	0	6;12	n	0.00	0	5.0	0	4;6	n	0.05	1	17.5	1	8;27	n	0.25	3	9.0	3	6;12	y	0.09	1	10.5	1	13;8	n	ENSMUSG00000020131.15	Pcsk4	chr10	protein_coding	proprotein convertase subtilisin/kexin type 4
novel_NIR_2054	chr10	80159788	80161607	-	80159788	80160766	A5SS&ES	ENSMUST00000137177.8	novel	0.00	0	15	0	15	n	0.25	2	6	2	6	y	0.00	0	9	0	9	n	0.30	3	7	3	7	y	0.00	0	31	0	31	n	0.00	0	8	0	8	n	0.00	0	19	0	19	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.00	0	14	0	14	n	0.00	0	18	0	18	n	0.00	0	11	0	11	n	ENSMUSG00000020131.15	Pcsk4	chr10	protein_coding	proprotein convertase subtilisin/kexin type 4
novel_NIR_2055	chr10	80161154	80161417	-	80161093	80161417	A3SS	ENSMUST00000128653.8	novel	1.00	4	0	4	0	y	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	8	0	8	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	ENSMUSG00000020131.15	Pcsk4	chr10	protein_coding	proprotein convertase subtilisin/kexin type 4
novel_NIR_2056	chr10	80161154	80161417	-	80161239	80161417	A3SS	ENSMUST00000020340.15	novel	0.57	4	3	4	3	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	8	0	8	0	y	0.25	1	3	1	3	n	0.67	4	2	4	2	y	0.50	3	3	3	3	y	0.38	3	5	3	5	y	0.67	4	2	4	2	y	0.50	2	2	2	2	y	1.00	3	0	3	0	y	ENSMUSG00000020131.15	Pcsk4	chr10	protein_coding	proprotein convertase subtilisin/kexin type 4
novel_NIR_2057	chr10	80169661	80169874	+	80169661	80170944	A3SS	ENSMUST00000040081.7	novel	0.93	27	2	27	2	y	1.00	26	0	26	0	y	1.00	3	0	3	0	y	0.93	40	3	40	3	y	1.00	25	0	25	0	y	-	-	-	-	-	-	0.94	46	3	46	3	y	0.67	6	3	6	3	y	1.00	6	0	6	0	y	0.90	28	3	28	3	y	1.00	29	0	29	0	y	1.00	24	0	24	0	y	ENSMUSG00000035504.17	Reep6	chr10	protein_coding	receptor accessory protein 6
novel_NIR_2058	chr10	80169661	80169890	+	80169661	80170944	A3SS	ENSMUST00000040081.7	novel	0.00	0	2	0	2	n	1.00	23	0	23	0	y	1.00	3	0	3	0	y	0.88	21	3	21	3	y	1.00	59	0	59	0	y	1.00	10	0	10	0	y	0.94	45	3	45	3	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.88	21	3	21	3	y	1.00	20	0	20	0	y	1.00	8	0	8	0	y	ENSMUSG00000035504.17	Reep6	chr10	protein_coding	receptor accessory protein 6
novel_NIR_2059	chr10	80170631	80170944	+	80169661	80170944	A5SS	ENSMUST00000040081.7	novel	0.33	1	2	1	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.25	1	3	1	3	n	0.50	3	3	3	3	y	1.00	3	0	3	0	y	0.25	1	3	1	3	n	-	-	-	-	-	-	1.00	5	0	5	0	y	ENSMUSG00000035504.17	Reep6	chr10	protein_coding	receptor accessory protein 6
novel_NIR_2060	chr10	80178533	80178743	-	80178227	80178743	A3SS	ENSMUST00000137576.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000043822.19	Adamtsl5	chr10	protein_coding	ADAMTS-like 5
novel_NIR_2061	chr10	80194168	80194621	+	80194192	80194621	A5SS	ENSMUST00000105351.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000035486.15	Plk5	chr10	protein_coding	polo like kinase 5
novel_NIR_2062	chr10	80231119	80231276	-	80231119	80231270	A5SS	ENSMUST00000105348.8	novel	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	24	0	24	n	0.20	2	8	2	8	y	0.00	0	28	0	28	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.17	3	15	3	15	y	0.00	0	7	0	7	n	0.00	0	18	0	18	n	0.00	0	22	0	22	n	0.00	0	13	0	13	n	ENSMUSG00000035478.15	Mbd3	chr10	protein_coding	methyl-CpG binding domain protein 3
novel_NIR_2063	chr10	80240120	80240346	-	80240120	80242334	A5SS	ENSMUST00000141683.2	novel	0.00	0	14	0	14	n	0.12	2	14	2	14	n	0.22	4	14	4	14	y	0.08	1	12	1	12	n	0.31	4	9	4	9	y	0.00	0	6	0	6	n	0.07	1	14	1	14	n	0.08	1	11	1	11	n	0.00	0	13	0	13	n	0.00	0	16	0	16	n	0.07	1	14	1	14	n	0.00	0	14	0	14	n	ENSMUSG00000020163.13	Uqcr11	chr10	protein_coding	ubiquinol-cytochrome c reductase, complex III subunit XI
novel_NIR_2064	chr10	80240120	80240346	-	80240120	80242391	A5SS	ENSMUST00000138428.8	novel	-	-	-	-	-	-	0.33	2	4	2	4	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	0.44	4	5	4	5	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.20	1	4	1	4	n	-	-	-	-	-	-	ENSMUSG00000020163.13	Uqcr11	chr10	protein_coding	ubiquinol-cytochrome c reductase, complex III subunit XI
novel_NIR_2065	chr10	80240120	80242076	-	80240120	80242391	A5SS	ENSMUST00000138428.8	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.17	1	5	1	5	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	1.00	2	0	2	0	y	ENSMUSG00000020163.13	Uqcr11	chr10	protein_coding	ubiquinol-cytochrome c reductase, complex III subunit XI
novel_NIR_2066	chr10	80240120	80242522	-	80240120	80242334	A5SS	ENSMUST00000141683.2	novel	0.18	3	14	3	14	y	0.07	1	14	1	14	n	0.12	2	14	2	14	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.14	1	6	1	6	n	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.06	1	16	1	16	n	0.00	0	14	0	14	n	0.07	1	14	1	14	n	ENSMUSG00000020163.13	Uqcr11	chr10	protein_coding	ubiquinol-cytochrome c reductase, complex III subunit XI
novel_NIR_2067	chr10	80240120	80242522	-	80240120	80242391	A5SS	ENSMUST00000138428.8	novel	1.00	3	0	3	0	y	0.20	1	4	1	4	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	5	0	5	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	4	0	4	n	1.00	1	0	1	0	n	ENSMUSG00000020163.13	Uqcr11	chr10	protein_coding	ubiquinol-cytochrome c reductase, complex III subunit XI
novel_NIR_2068	chr10	80240120	80242569	-	80240120	80242334	A5SS	ENSMUST00000141683.2	novel	0.00	0	14	0	14	n	0.00	0	14	0	14	n	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.19	3	13	3	13	y	0.00	0	16	0	16	n	0.00	0	14	0	14	n	0.00	0	14	0	14	n	ENSMUSG00000020163.13	Uqcr11	chr10	protein_coding	ubiquinol-cytochrome c reductase, complex III subunit XI
novel_NIR_2069	chr10	80240120	80242569	-	80240120	80242391	A5SS	ENSMUST00000138428.8	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	ENSMUSG00000020163.13	Uqcr11	chr10	protein_coding	ubiquinol-cytochrome c reductase, complex III subunit XI
novel_NIR_2070	chr10	80246108	80246239	-	80246108	80248661	A5SS	ENSMUST00000105342.8	novel	0.00	0	9	0	9	n	0.09	1	10	1	10	n	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.00	0	16	0	16	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.18	2	9	2	9	y	0.11	1	8	1	8	n	0.00	0	9	0	9	n	ENSMUSG00000020167.15	Tcf3	chr10	protein_coding	transcription factor 3
novel_NIR_2071	chr10	80246108	80248668	-	80246108	80248661	A5SS	ENSMUST00000105342.8	novel	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.07	1	14	1	14	n	0.00	0	16	0	16	n	0.06	1	16	1	16	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.18	2	9	2	9	y	0.11	1	8	1	8	n	0.00	0	9	0	9	n	ENSMUSG00000020167.15	Tcf3	chr10	protein_coding	transcription factor 3
novel_NIR_2072	chr10	80248856	80249039	-	80246455	80249039	A3SS	ENSMUST00000105340.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	ENSMUSG00000020167.15	Tcf3	chr10	protein_coding	transcription factor 3
novel_NIR_2073	chr10	80419897	80419973	-	80419897	80421442	A5SS	ENSMUST00000189605.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000003346.15	Abhd17a	chr10	protein_coding	abhydrolase domain containing 17A
novel_NIR_2074	chr10	80419897	80420157	-	80419897	80421442	A5SS	ENSMUST00000189605.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000003346.15	Abhd17a	chr10	protein_coding	abhydrolase domain containing 17A
novel_NIR_2075	chr10	80438783	80448176	+	80438783	80441973	3pMXE	ENSMUST00000221960.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	5	0	5	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000113640.2	Adat3	chr10	protein_coding	adenosine deaminase, tRNA-specific 3
novel_NIR_2076	chr10	80438783	80448176	+	80438783	80442148	3pMXE	ENSMUST00000038411.5	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.60	3	2	3	2	y	0.62	5	3	5	3	y	0.67	2	1	2	1	y	0.00	0	5	0	5	n	1.00	4	0	4	0	y	0.75	3	1	3	1	y	0.17	1	5	1	5	n	0.50	1	1	1	1	n	0.33	1	2	1	2	n	0.50	2	2	2	2	y	ENSMUSG00000113640.2	Adat3	chr10	protein_coding	adenosine deaminase, tRNA-specific 3
novel_NIR_2077	chr10	80444684	80445169	+	80444684	80445047	A3SS	ENSMUST00000221387.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000113949.2	Scamp4	chr10	protein_coding	secretory carrier membrane protein 4
novel_NIR_2078	chr10	80444684	80445226	+	80444684	80445047	A3SS	ENSMUST00000221387.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000113949.2	Scamp4	chr10	protein_coding	secretory carrier membrane protein 4
novel_NIR_2079	chr10	80473429	80473722	+	80470275	80473722	A5SS	ENSMUST00000219814.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000003345.17	Csnk1g2	chr10	protein_coding	casein kinase 1, gamma 2
novel_NIR_2080	chr10	80507908	80511658	-	80507849	80511658	A3SS	ENSMUST00000200082.5	novel	0.11	12	101	12	101	n	0.13	15	104	15	104	n	0.11	12	100	12	100	n	0.16	30	155	30	155	y	0.18	21	97	21	97	y	0.18	10	46	10	46	y	0.14	29	184	29	184	n	0.10	7	65	7	65	n	0.10	10	87	10	87	n	0.15	28	164	28	164	y	0.11	11	89	11	89	n	0.12	14	103	14	103	n	ENSMUSG00000020190.14	Mknk2	chr10	protein_coding	MAP kinase-interacting serine/threonine kinase 2
novel_NIR_2081	chr10	80511774	80511957	-	80511774	80511915	A5SS	ENSMUST00000200082.5	novel	0.83	65	13	65	13	y	0.67	26	13	26	13	y	0.81	61	14	61	14	y	0.74	60	21	60	21	y	0.85	52	9	52	9	y	0.76	19	6	19	6	y	0.84	80	15	80	15	y	0.92	22	2	22	2	y	0.73	19	7	19	7	y	0.84	63	12	63	12	y	0.78	32	9	32	9	y	0.79	48	13	48	13	y	ENSMUSG00000020190.14	Mknk2	chr10	protein_coding	MAP kinase-interacting serine/threonine kinase 2
novel_NIR_2082	chr10	80511774	80511957	-	80511774	80513770	A5SS	ENSMUST00000199949.2	novel	1.00	65	0	65	0	y	1.00	26	0	26	0	y	1.00	61	0	61	0	y	1.00	60	0	60	0	y	1.00	52	0	52	0	y	1.00	19	0	19	0	y	1.00	80	0	80	0	y	1.00	22	0	22	0	y	1.00	19	0	19	0	y	1.00	63	0	63	0	y	1.00	32	0	32	0	y	1.00	48	0	48	0	y	ENSMUSG00000020190.14	Mknk2	chr10	protein_coding	MAP kinase-interacting serine/threonine kinase 2
novel_NIR_2083	chr10	80539590	80539698	+	80539590	80539687	A3SS	ENSMUST00000218184.2	novel	0.03	1	39	1	39	n	0.15	6	35	6	35	y	0.08	1	11	1	11	n	0.10	4	38	4	38	n	0.15	6	35	6	35	y	0.00	0	6	0	6	n	0.02	1	58	1	58	n	0.00	0	16	0	16	n	0.04	2	44	2	44	n	0.00	0	54	0	54	n	0.05	2	40	2	40	n	0.10	6	54	6	54	n	ENSMUSG00000055862.8	Izumo4	chr10	protein_coding	IZUMO family member 4
novel_NIR_2084	chr10	80540028	80540124	+	80540028	80540252	A3SS	ENSMUST00000219987.2	novel	0.00	0	52	0	52	n	0.15	7	40	7	40	y	0.14	1	6	1	6	n	0.14	6	36	6	36	n	0.15	10	56	10	56	y	0.17	1	5	1	5	n	0.03	2	62	2	62	n	0.06	1	16	1	16	n	0.10	4	35	4	35	n	0.10	5	46	5	46	n	0.08	4	46	4	46	n	0.02	1	53	1	53	n	ENSMUSG00000055862.8	Izumo4	chr10	protein_coding	IZUMO family member 4
novel_NIR_2085	chr10	80540269	80540898	+	80540269;80540547	80540455;80540898	ES	ENSMUST00000218330.2	novel	0.08	1	12.0	1	2;22	n	0.17	3	15.0	3	3;27	y	0.00	0	2.0	0	0;4	n	0.07	1	13.5	1	3;24	n	0.09	2	21.5	2	7;36	n	0.00	0	1.5	0	0;3	n	0.09	2	19.5	2	1;38	n	0.00	0	5.0	0	0;10	n	0.08	1	12.0	1	0;24	n	0.13	3	20.0	3	4;36	n	0.00	0	17.0	0	1;33	n	0.00	0	23.0	0	4;42	n	ENSMUSG00000055862.8	Izumo4	chr10	protein_coding	IZUMO family member 4
novel_NIR_2086	chr10	80609574	80613390	+	80609602	80613390	A5SS	ENSMUST00000105336.9	novel	0.00	0	12	0	12	n	0.12	1	7	1	7	n	0.00	0	29	0	29	n	0.00	0	10	0	10	n	0.10	2	18	2	18	n	0.00	0	20	0	20	n	0.08	2	24	2	24	n	0.17	2	10	2	10	y	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.19	3	13	3	13	y	ENSMUSG00000061589.15	Dot1l	chr10	protein_coding	DOT1-like, histone H3 methyltransferase (S. cerevisiae)
novel_NIR_2087	chr10	8061770	8067085	+	8052099	8067085	A5SS	ENSMUST00000219578.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000112109.2	Gm30906	chr10	lncRNA	predicted gene, 30906
novel_NIR_2088	chr10	80623797	80624646	+	80623797	80624349	A3SS	ENSMUST00000105336.9	novel	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	19	0	19	n	0.00	0	17	0	17	n	0.05	1	20	1	20	n	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.00	0	18	0	18	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.17	2	10	2	10	y	0.00	0	22	0	22	n	ENSMUSG00000061589.15	Dot1l	chr10	protein_coding	DOT1-like, histone H3 methyltransferase (S. cerevisiae)
novel_NIR_2089	chr10	80626218	80627233	+	80626218	80627977	A3SS	ENSMUST00000150338.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061589.15	Dot1l	chr10	protein_coding	DOT1-like, histone H3 methyltransferase (S. cerevisiae)
novel_NIR_2090	chr10	80626218	80627233	+	80626218	80629341	A3SS	ENSMUST00000127740.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061589.15	Dot1l	chr10	protein_coding	DOT1-like, histone H3 methyltransferase (S. cerevisiae)
novel_NIR_2091	chr10	80632510	80632566	-	80632452	80632566	A3SS	ENSMUST00000219959.2	novel	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.40	2	3	2	3	y	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.08	1	12	1	12	n	0.00	0	14	0	14	n	0.00	0	19	0	19	n	0.00	0	7	0	7	n	ENSMUSG00000035278.10	Plekhj1	chr10	protein_coding	pleckstrin homology domain containing, family J member 1
novel_NIR_2092	chr10	80632656	80633915	-	80632656	80633357	5pMXE	ENSMUST00000220093.2	novel	1.00	2	0	2	0	y	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000035278.10	Plekhj1	chr10	protein_coding	pleckstrin homology domain containing, family J member 1
novel_NIR_2093	chr10	80632656	80633915	-	80633551	80633915	3pMXE	ENSMUST00000218209.2	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035278.10	Plekhj1	chr10	protein_coding	pleckstrin homology domain containing, family J member 1
novel_NIR_2094	chr10	80663038	80664071	+	80663571	80664071	5pMXE	ENSMUST00000179620.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	ENSMUSG00000035242.16	Oaz1	chr10	protein_coding	ornithine decarboxylase antizyme 1
novel_NIR_2095	chr10	80664630	80664776	+	80664630	80664727	A3SS	ENSMUST00000179341.2	novel	0.00	0	73	0	73	n	0.00	0	79	0	79	n	0.00	0	52	0	52	n	0.00	0	62	0	62	n	0.00	0	86	0	86	n	0.15	7	41	7	41	y	0.00	0	103	0	103	n	0.00	0	38	0	38	n	0.00	0	62	0	62	n	0.00	0	108	0	108	n	0.00	0	90	0	90	n	0.00	0	97	0	97	n	ENSMUSG00000035242.16	Oaz1	chr10	protein_coding	ornithine decarboxylase antizyme 1
novel_NIR_2096	chr10	80702494	80703217	+	80702494	80703234	A3SS	ENSMUST00000035597.10	novel	0.11	1	8	1	8	n	0.00	0	9	0	9	n	0.25	3	9	3	9	y	0.00	0	8	0	8	n	0.20	3	12	3	12	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.06	1	16	1	16	n	0.00	0	14	0	14	n	ENSMUSG00000035206.11	Sppl2b	chr10	protein_coding	signal peptide peptidase like 2B
novel_NIR_2097	chr10	80702494	80703237	+	80702494	80703234	A3SS	ENSMUST00000035597.10	novel	0.33	4	8	4	8	y	0.18	2	9	2	9	y	0.10	1	9	1	9	n	0.11	1	8	1	8	n	0.08	1	12	1	12	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.07	1	14	1	14	n	ENSMUSG00000035206.11	Sppl2b	chr10	protein_coding	signal peptide peptidase like 2B
novel_NIR_2098	chr10	80702549	80703234	+	80702494	80703234	A5SS	ENSMUST00000035597.10	novel	0.33	4	8	4	8	y	0.40	6	9	6	9	y	0.25	3	9	3	9	y	0.38	5	8	5	8	y	0.29	5	12	5	12	y	0.00	0	4	0	4	n	0.43	3	4	3	4	y	0.29	2	5	2	5	y	0.36	5	9	5	9	y	0.20	3	12	3	12	y	0.20	4	16	4	16	y	0.33	7	14	7	14	y	ENSMUSG00000035206.11	Sppl2b	chr10	protein_coding	signal peptide peptidase like 2B
novel_NIR_2099	chr10	80735938	80736316	-	80736166	80736316	A3SS	ENSMUST00000218481.2	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	1.00	14	0	14	0	y	0.89	8	1	8	1	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.90	9	1	9	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000020219.8	Timm13	chr10	protein_coding	translocase of inner mitochondrial membrane 13
novel_NIR_2100	chr10	80958446	80958813	+	80958446	80964441	A3SS	ENSMUST00000220329.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	ENSMUSG00000035027.19	Map2k2	chr10	protein_coding	mitogen-activated protein kinase kinase 2
novel_NIR_2101	chr10	80958446	80959426	+	80958446	80964441	A3SS	ENSMUST00000220329.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000035027.19	Map2k2	chr10	protein_coding	mitogen-activated protein kinase kinase 2
novel_NIR_2102	chr10	80964156	80964441	+	80958446	80964441	A5SS	ENSMUST00000220329.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000035027.19	Map2k2	chr10	protein_coding	mitogen-activated protein kinase kinase 2
novel_NIR_2103	chr10	80981051	80983808	+	80981051	80988532	A3SS	ENSMUST00000121840.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035011.16	Zbtb7a	chr10	protein_coding	zinc finger and BTB domain containing 7a
novel_NIR_2104	chr10	81104153	81105149	+	81104153	81104644	3pMXE	ENSMUST00000218742.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	4	0	4	0	y	0.00	0	3	0	3	n	0.14	1	6	1	6	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000004931.12	Apba3	chr10	protein_coding	amyloid beta (A4) precursor protein-binding, family A, member 3
novel_NIR_2105	chr10	81104153	81105149	+	81104153	81104692	3pMXE	ENSMUST00000219304.2	novel	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.31	4	9	4	9	y	0.00	0	11	0	11	n	0.06	1	15	1	15	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	ENSMUSG00000004931.12	Apba3	chr10	protein_coding	amyloid beta (A4) precursor protein-binding, family A, member 3
novel_NIR_2106	chr10	81149486	81149569	+	81149486	81150826	A3SS	ENSMUST00000161869.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000034902.18	Pip5k1c	chr10	protein_coding	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma
novel_NIR_2107	chr10	81183290	81183820	-	81183396	81183820	A3SS	ENSMUST00000154609.3	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000020232.18	Hmg20b	chr10	protein_coding	high mobility group 20B
novel_NIR_2108	chr10	81407677	81411412	+	81410782	81411412	5pMXE	ENSMUST00000131794.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034771.16	Tle2	chr10	protein_coding	transducin-like enhancer of split 2
novel_NIR_2109	chr10	81412476	81413166	+	81412476	81413523	A3SS	ENSMUST00000143285.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034771.16	Tle2	chr10	protein_coding	transducin-like enhancer of split 2
novel_NIR_2110	chr10	81418720	81420453	+	81418720	81419847	A3SS&ES	ENSMUST00000129798.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000034771.16	Tle2	chr10	protein_coding	transducin-like enhancer of split 2
novel_NIR_2111	chr10	81418720	81420453	+	81418720	81420494	A3SS	ENSMUST00000151470.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034771.16	Tle2	chr10	protein_coding	transducin-like enhancer of split 2
novel_NIR_2112	chr10	81422171	81422689	+	81422171	81422692	A3SS	ENSMUST00000129798.8	novel	0.50	1	1	1	1	n	0.43	3	4	3	4	y	0.00	0	2	0	2	n	0.14	1	6	1	6	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.18	2	9	2	9	y	0.33	1	2	1	2	n	0.09	1	10	1	10	n	0.17	1	5	1	5	n	0.22	2	7	2	7	y	0.17	1	5	1	5	n	ENSMUSG00000034771.16	Tle2	chr10	protein_coding	transducin-like enhancer of split 2
novel_NIR_2113	chr10	81422171	81422689	+	81422207	81422689	A5SS	ENSMUST00000146358.8	novel	0.20	1	4	1	4	n	0.60	3	2	3	2	y	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.17	2	10	2	10	y	1.00	1	0	1	0	n	0.20	1	4	1	4	n	0.17	1	5	1	5	n	0.14	2	12	2	12	n	0.17	1	5	1	5	n	ENSMUSG00000034771.16	Tle2	chr10	protein_coding	transducin-like enhancer of split 2
novel_NIR_2114	chr10	81423118	81423387	+	81423175	81423387	A5SS	ENSMUST00000140433.8	novel	0.11	2	16	2	16	n	0.07	1	13	1	13	n	0.30	3	7	3	7	y	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.03	1	34	1	34	n	0.05	1	18	1	18	n	0.13	3	20	3	20	n	ENSMUSG00000034771.16	Tle2	chr10	protein_coding	transducin-like enhancer of split 2
novel_NIR_2115	chr10	81423175	81423487	+	81423175	81423387	A3SS	ENSMUST00000140433.8	novel	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.22	2	7	2	7	y	0.00	0	11	0	11	n	0.06	1	16	1	16	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	34	0	34	n	0.00	0	18	0	18	n	0.05	1	20	1	20	n	ENSMUSG00000034771.16	Tle2	chr10	protein_coding	transducin-like enhancer of split 2
novel_NIR_2116	chr10	81424790	81425254	+	81424793	81425254	A5SS	ENSMUST00000140433.8	novel	0.00	0	29	0	29	n	0.00	0	19	0	19	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	19	0	19	n	0.00	0	5	0	5	n	0.00	0	33	0	33	n	0.21	4	15	4	15	y	0.00	0	21	0	21	n	0.00	0	35	0	35	n	0.00	0	28	0	28	n	0.03	1	38	1	38	n	ENSMUSG00000034771.16	Tle2	chr10	protein_coding	transducin-like enhancer of split 2
novel_NIR_2117	chr10	81426154	81426391	+	81426186	81426391	A5SS	ENSMUST00000146358.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000034771.16	Tle2	chr10	protein_coding	transducin-like enhancer of split 2
novel_NIR_2118	chr10	81459635	81459826	-	81458706	81459826	A3SS	ENSMUST00000119324.8	novel	0.09	1	10	1	10	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.10	1	9	1	9	n	0.00	0	6	0	6	n	0.12	1	7	1	7	n	0.17	2	10	2	10	y	0.20	2	8	2	8	n	0.00	0	17	0	17	n	ENSMUSG00000034748.17	Sirt6	chr10	protein_coding	sirtuin 6
novel_NIR_2119	chr10	81461732	81462262	-	81461732	81462324	A5SS	ENSMUST00000119324.8	novel	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.25	2	6	2	6	y	0.00	0	14	0	14	n	0.10	1	9	1	9	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	ENSMUSG00000034748.17	Sirt6	chr10	protein_coding	sirtuin 6
novel_NIR_2120	chr10	81462821	81463306	-	81462451	81463306	A3SS	ENSMUST00000042923.9	novel	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.22	2	7	2	7	y	0.20	1	4	1	4	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	ENSMUSG00000034748.17	Sirt6	chr10	protein_coding	sirtuin 6
novel_NIR_2121	chr10	81471691	81472203	+	81465582	81472203	A5SS	ENSMUST00000123896.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000054708.18	Ankrd24	chr10	protein_coding	ankyrin repeat domain 24
novel_NIR_2122	chr10	81471691	81472203	+	81470992	81472203	A5SS	ENSMUST00000140345.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000054708.18	Ankrd24	chr10	protein_coding	ankyrin repeat domain 24
novel_NIR_2123	chr10	81471691	81472203	+	81471586	81472203	A5SS	ENSMUST00000119336.8	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000054708.18	Ankrd24	chr10	protein_coding	ankyrin repeat domain 24
novel_NIR_2124	chr10	81479727	81482146	+	81479727	81480810	A3SS&ES	ENSMUST00000132458.2	novel	0.00	0	2	0	2	n	0.50	3	3	3	3	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000054708.18	Ankrd24	chr10	protein_coding	ankyrin repeat domain 24
novel_NIR_2125	chr10	81479727	81482146	+	81479727	81482139	A3SS	ENSMUST00000119336.8	novel	0.00	0	9	0	9	n	0.23	3	10	3	10	y	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.00	0	5	0	5	n	ENSMUSG00000054708.18	Ankrd24	chr10	protein_coding	ankyrin repeat domain 24
novel_NIR_2126	chr10	81485000	81494148	+	81485000	81497832	A3SS	ENSMUST00000189672.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000096856.8	Gm10778	chr10	protein_coding	predicted gene 10778
novel_NIR_2127	chr10	81540734	81541546	+	81540734	81554303	A3SS	ENSMUST00000201819.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000096795.5	Zfp433	chr10	protein_coding	zinc finger protein 433
novel_NIR_2128	chr10	81540734	81541546	+	81540734	81554753	A3SS	ENSMUST00000200889.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000096795.5	Zfp433	chr10	protein_coding	zinc finger protein 433
novel_NIR_2129	chr10	81701257	81713863	+	81699843	81713863	A5SS	ENSMUST00000220314.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000112640.2	Gm32687	chr10	protein_coding	predicted gene, 32687
novel_NIR_2130	chr10	81896999	81900023	+	81897182	81900023	A5SS	ENSMUST00000209614.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	6	0	6	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	5	0	5	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000061371.8	Zfp873	chr10	protein_coding	zinc finger protein 873
novel_NIR_2131	chr10	81974213	81979421	+	81974213	81986051	A3SS	ENSMUST00000201286.4	novel	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.60	3	2	3	2	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000078435.6	AU041133	chr10	protein_coding	expressed sequence AU041133
novel_NIR_2132	chr10	82014288	82025821	+	82014288	82028703	A3SS	ENSMUST00000156803.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.57	4	3	4	3	y	0.50	4	4	4	4	y	1.00	3	0	3	0	y	ENSMUSG00000112110.2	Gm15608	chr10	lncRNA	predicted gene 15608
novel_NIR_2133	chr10	82027015	82028703	+	82014288	82028703	A5SS	ENSMUST00000156803.9	novel	1.00	3	0	3	0	y	1.00	3	0	3	0	y	0.86	6	1	6	1	y	1.00	3	0	3	0	y	1.00	6	0	6	0	y	0.33	1	2	1	2	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	1.00	4	0	4	0	y	0.62	5	3	5	3	y	0.33	2	4	2	4	y	1.00	4	0	4	0	n	ENSMUSG00000112110.2	Gm15608	chr10	lncRNA	predicted gene 15608
novel_NIR_2134	chr10	82031232	82034972	+	82031232	82034976	A3SS	ENSMUST00000156803.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000112110.2	Gm15608	chr10	lncRNA	predicted gene 15608
novel_NIR_2135	chr10	82545882;82546754	82546564;82547669	+	82545882	82547669	cassetteExon	ENSMUST00000020478.14	novel	0.00	0.0	14	0;0	14	n	0.00	0.0	6	0;0	6	n	0.04	1.0	27	0;2	27	n	0.00	0.0	8	0;0	8	n	0.00	0.0	12	0;0	12	n	0.00	0.0	6	0;0	6	n	0.04	0.5	12	0;1	12	n	0.00	0.0	14	0;0	14	n	0.07	0.5	7	1;0	7	n	0.00	0.0	11	0;0	11	n	0.05	0.5	10	1;0	10	n	0.17	2.5	12	3;2	12	y	ENSMUSG00000020246.14	Hcfc2	chr10	protein_coding	host cell factor C2
novel_NIR_2136	chr10	82588438	82588772	-	82588438	82592536	A5SS	ENSMUST00000127832.2	novel	0.33	2	4	2	4	y	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.12	2	15	2	15	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.00	0	18	0	18	n	0.00	0	12	0	12	n	0.00	0	20	0	20	n	ENSMUSG00000020248.19	Nfyb	chr10	protein_coding	nuclear transcription factor-Y beta
novel_NIR_2137	chr10	82681830	82692876	-	82681830	82686363	A5SS&ES	ENSMUST00000220169.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	0.33	1	2	1	2	n	-	-	-	-	-	-	ENSMUSG00000112375.2	Gm38560	chr10	lncRNA	predicted gene, 38560
novel_NIR_2138	chr10	82695134	82708772	+	82669865	82708772	A5SS	ENSMUST00000219368.3	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000020250.12	Txnrd1	chr10	protein_coding	thioredoxin reductase 1
novel_NIR_2139	chr10	82695134	82708772	+	82695134	82713100	A3SS	ENSMUST00000218694.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000020250.12	Txnrd1	chr10	protein_coding	thioredoxin reductase 1
novel_NIR_2140	chr10	82695134;82708846	82708772;82710447	+	82695134	82710447	cassetteExon	ENSMUST00000020484.9	novel	0.08	1.5	17	1;2	17	n	0.03	0.5	15	0;1	15	n	0.19	8.5	36	3;14	36	y	0.04	1.0	27	0;2	27	n	0.04	1.5	35	1;2	35	n	0.31	4.5	10	1;8	10	n	0.20	4.0	16	0;8	16	n	0.04	0.5	13	1;0	13	n	0.00	0.0	12	0;0	12	n	0.00	0.0	31	0;0	31	n	0.11	1.5	12	0;3	12	n	0.19	2.5	11	1;4	11	n	ENSMUSG00000020250.12	Txnrd1	chr10	protein_coding	thioredoxin reductase 1
novel_NIR_2141	chr10	82696464	82708772	+	82669865	82708772	A5SS	ENSMUST00000219368.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	8	0	8	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000020250.12	Txnrd1	chr10	protein_coding	thioredoxin reductase 1
novel_NIR_2142	chr10	82708846	82710447	+	82695134	82710447	A5SS	ENSMUST00000020484.9	novel	0.11	2	17	2	17	n	0.06	1	15	1	15	n	0.28	14	36	14	36	n	0.07	2	27	2	27	n	0.05	2	35	2	35	n	0.44	8	10	8	10	n	0.33	8	16	8	16	y	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.00	0	31	0	31	n	0.20	3	12	3	12	y	0.27	4	11	4	11	n	ENSMUSG00000020250.12	Txnrd1	chr10	protein_coding	thioredoxin reductase 1
novel_NIR_2143	chr10	82708846	82710447	+	82709109	82710447	A5SS	ENSMUST00000219368.3	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	14	0	14	0	y	1.00	2	0	2	0	y	0.67	2	1	2	1	y	0.73	8	3	8	3	y	1.00	8	0	8	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	4	0	4	0	y	ENSMUSG00000020250.12	Txnrd1	chr10	protein_coding	thioredoxin reductase 1
novel_NIR_2144	chr10	82710569	82713100	+	82695134	82713100	A5SS	ENSMUST00000218694.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000020250.12	Txnrd1	chr10	protein_coding	thioredoxin reductase 1
novel_NIR_2145	chr10	83152653	83162283	-	83152653	83158703	5pMXE	ENSMUST00000154926.2	novel	-	-	-	-	-	-	0.11	1	8	1	8	n	0.28	9	23	9	23	y	0.29	7	17	7	17	y	0.59	16	11	16	11	y	0.50	4	4	4	4	y	0.36	5	9	5	9	y	0.50	8	8	8	8	y	1.00	3	0	3	0	y	0.62	8	5	8	5	y	0.25	1	3	1	3	n	0.29	4	10	4	10	y	ENSMUSG00000034591.6	Slc41a2	chr10	protein_coding	solute carrier family 41, member 2
novel_NIR_2146	chr10	83152653	83162283	-	83152653	83171066	A5SS	ENSMUST00000154730.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	9	0	9	0	y	1.00	7	0	7	0	y	1.00	16	0	16	0	y	1.00	4	0	4	0	y	1.00	5	0	5	0	y	1.00	8	0	8	0	y	1.00	3	0	3	0	y	1.00	8	0	8	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	ENSMUSG00000034591.6	Slc41a2	chr10	protein_coding	solute carrier family 41, member 2
novel_NIR_2147	chr10	83152653	83162283	-	83152653	83173090	A5SS	ENSMUST00000126617.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.47	9	10	9	10	y	1.00	7	0	7	0	y	0.73	16	6	16	6	y	0.50	4	4	4	4	y	0.56	5	4	5	4	y	0.80	8	2	8	2	y	1.00	3	0	3	0	y	0.73	8	3	8	3	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	ENSMUSG00000034591.6	Slc41a2	chr10	protein_coding	solute carrier family 41, member 2
novel_NIR_2148	chr10	83152653	83162283	-	83152653	83173624	A5SS	ENSMUST00000039956.6	novel	0.00	0	9	0	9	n	0.17	1	5	1	5	n	0.19	9	38	9	38	y	0.47	7	8	7	8	y	0.62	16	10	16	10	y	0.22	4	14	4	14	y	0.62	5	3	5	3	y	0.38	8	13	8	13	y	0.43	3	4	3	4	y	0.67	8	4	8	4	y	0.33	1	2	1	2	n	0.18	4	18	4	18	y	ENSMUSG00000034591.6	Slc41a2	chr10	protein_coding	solute carrier family 41, member 2
novel_NIR_2149	chr10	83152653	83162481	-	83152653	83158703	5pMXE	ENSMUST00000154926.2	novel	1.00	28	0	28	0	y	0.67	16	8	16	8	y	0.72	58	23	58	23	y	0.77	56	17	56	17	y	0.82	49	11	49	11	y	0.78	14	4	14	4	y	0.76	29	9	29	9	y	0.67	16	8	16	8	y	1.00	24	0	24	0	y	0.90	43	5	43	5	y	0.90	27	3	27	3	y	0.82	47	10	47	10	y	ENSMUSG00000034591.6	Slc41a2	chr10	protein_coding	solute carrier family 41, member 2
novel_NIR_2150	chr10	83152653	83162481	-	83152653	83171066	A5SS	ENSMUST00000154730.2	novel	1.00	28	0	28	0	y	1.00	16	0	16	0	y	1.00	58	0	58	0	y	1.00	56	0	56	0	y	1.00	49	0	49	0	y	1.00	14	0	14	0	y	1.00	29	0	29	0	y	1.00	16	0	16	0	y	1.00	24	0	24	0	y	1.00	43	0	43	0	y	1.00	27	0	27	0	y	1.00	47	0	47	0	y	ENSMUSG00000034591.6	Slc41a2	chr10	protein_coding	solute carrier family 41, member 2
novel_NIR_2151	chr10	83152653	83162481	-	83152653	83173090	A5SS	ENSMUST00000126617.2	novel	1.00	28	0	28	0	y	1.00	16	0	16	0	y	0.85	58	10	58	10	y	1.00	56	0	56	0	y	0.89	49	6	49	6	y	0.78	14	4	14	4	y	0.88	29	4	29	4	y	0.89	16	2	16	2	y	1.00	24	0	24	0	y	0.93	43	3	43	3	y	1.00	27	0	27	0	y	1.00	47	0	47	0	y	ENSMUSG00000034591.6	Slc41a2	chr10	protein_coding	solute carrier family 41, member 2
novel_NIR_2152	chr10	83152653	83162481	-	83152653	83173624	A5SS	ENSMUST00000039956.6	novel	0.76	28	9	28	9	y	0.76	16	5	16	5	y	0.60	58	38	58	38	y	0.88	56	8	56	8	y	0.83	49	10	49	10	y	0.50	14	14	14	14	y	0.91	29	3	29	3	y	0.55	16	13	16	13	y	0.86	24	4	24	4	y	0.91	43	4	43	4	y	0.93	27	2	27	2	y	0.72	47	18	47	18	y	ENSMUSG00000034591.6	Slc41a2	chr10	protein_coding	solute carrier family 41, member 2
novel_NIR_2153	chr10	83152653	83162548	-	83152653	83158703	5pMXE	ENSMUST00000154926.2	novel	1.00	2	0	2	0	y	0.47	7	8	7	8	y	0.12	3	23	3	23	n	0.11	2	17	2	17	n	0.21	3	11	3	11	y	0.20	1	4	1	4	n	0.36	5	9	5	9	y	0.20	2	8	2	8	y	1.00	5	0	5	0	y	0.55	6	5	6	5	y	0.00	0	3	0	3	n	0.00	0	10	0	10	n	ENSMUSG00000034591.6	Slc41a2	chr10	protein_coding	solute carrier family 41, member 2
novel_NIR_2154	chr10	83152653	83162548	-	83152653	83171066	A5SS	ENSMUST00000154730.2	novel	1.00	2	0	2	0	y	1.00	7	0	7	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034591.6	Slc41a2	chr10	protein_coding	solute carrier family 41, member 2
novel_NIR_2155	chr10	83152653	83162548	-	83152653	83173090	A5SS	ENSMUST00000126617.2	novel	1.00	2	0	2	0	y	1.00	7	0	7	0	y	0.23	3	10	3	10	y	1.00	2	0	2	0	y	0.33	3	6	3	6	y	0.20	1	4	1	4	n	0.56	5	4	5	4	y	0.50	2	2	2	2	y	1.00	5	0	5	0	y	0.67	6	3	6	3	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034591.6	Slc41a2	chr10	protein_coding	solute carrier family 41, member 2
novel_NIR_2156	chr10	83152653	83162548	-	83152653	83173624	A5SS	ENSMUST00000039956.6	novel	0.18	2	9	2	9	y	0.58	7	5	7	5	y	0.07	3	38	3	38	n	0.20	2	8	2	8	y	0.23	3	10	3	10	y	0.07	1	14	1	14	n	0.62	5	3	5	3	y	0.13	2	13	2	13	n	0.56	5	4	5	4	y	0.60	6	4	6	4	y	0.00	0	2	0	2	n	0.00	0	18	0	18	n	ENSMUSG00000034591.6	Slc41a2	chr10	protein_coding	solute carrier family 41, member 2
novel_NIR_2157	chr10	83436691	83436850	-	83436691	83437747	A5SS	ENSMUST00000177187.2	novel	0.50	1	1	1	1	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.17	1	5	1	5	n	0.00	0	8	0	8	n	0.20	1	4	1	4	n	0.18	2	9	2	9	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.12	1	7	1	7	n	ENSMUSG00000020263.15	Appl2	chr10	protein_coding	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2
novel_NIR_2158	chr10	83464697	83465542	-	83464697	83471949	A5SS	ENSMUST00000133719.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.70	7	3	7	3	y	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000020263.15	Appl2	chr10	protein_coding	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2
novel_NIR_2159	chr10	83464697	83465542	-	83464697	83476870	A5SS	ENSMUST00000020500.14	novel	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.35	7	13	7	13	y	0.00	0	16	0	16	n	0.21	3	11	3	11	y	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.50	2	2	2	2	y	0.00	0	19	0	19	n	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.00	0	21	0	21	n	ENSMUSG00000020263.15	Appl2	chr10	protein_coding	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2
novel_NIR_2160	chr10	84467724	84470765	+	84467724;84468419	84468319;84470765	ES	ENSMUST00000077175.7	novel	0.00	0	7.5	0	7;8	n	0.00	0	6.0	0	4;8	n	0.08	1	12.0	1	17;7	n	0.00	0	8.5	0	10;7	n	0.00	0	8.0	0	10;6	n	0.00	0	7.5	0	8;7	n	0.00	0	7.0	0	8;6	n	0.29	3	7.5	3	7;8	y	0.00	0	8.0	0	7;9	n	0.00	0	11.5	0	16;7	n	0.00	0	6.0	0	9;3	n	0.00	0	10.0	0	13;7	n	ENSMUSG00000034453.9	Polr3b	chr10	protein_coding	polymerase (RNA) III (DNA directed) polypeptide B
novel_NIR_2161	chr10	84695939	84696362	+	84694461	84696362	A5SS	ENSMUST00000060397.13	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	6	0	6	0	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	ENSMUSG00000020037.16	Rfx4	chr10	protein_coding	regulatory factor X, 4 (influences HLA class II expression)
novel_NIR_2162	chr10	84716153	84716680	+	84716153	84716677	A3SS	ENSMUST00000060397.13	novel	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.43	3	4	3	4	y	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.14	1	6	1	6	n	0.25	2	6	2	6	y	0.00	0	3	0	3	n	ENSMUSG00000020037.16	Rfx4	chr10	protein_coding	regulatory factor X, 4 (influences HLA class II expression)
novel_NIR_2163	chr10	84716838	84724380	+	84716838	84730064	A3SS	ENSMUST00000060397.13	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	3	0	3	0	y	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000020037.16	Rfx4	chr10	protein_coding	regulatory factor X, 4 (influences HLA class II expression)
novel_NIR_2164	chr10	84837765	84844521	+	84837765	84850940	A3SS	ENSMUST00000038523.15	novel	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.29	2	5	2	5	y	1.00	3	0	3	0	y	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	-	-	-	-	-	-	ENSMUSG00000035620.16	Ric8b	chr10	protein_coding	RIC8 guanine nucleotide exchange factor B
novel_NIR_2165	chr10	84844657	84850940	+	84837765	84850940	A5SS	ENSMUST00000038523.15	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.20	2	8	2	8	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.17	1	5	1	5	n	-	-	-	-	-	-	ENSMUSG00000035620.16	Ric8b	chr10	protein_coding	RIC8 guanine nucleotide exchange factor B
novel_NIR_2166	chr10	84844657	84850940	+	84844657;84845491	84845316;84850940	ES	ENSMUST00000214820.2	novel	0.00	0	1.5	0	0;3	n	0.00	0	2.0	0	2;2	n	0.00	0	2.5	0	2;3	n	0.00	0	1.5	0	1;2	n	0.00	0	3.0	0	3;3	n	1.00	1	0.0	1	0;0	n	0.67	2	1.0	2	0;2	y	0.00	0	1.0	0	0;2	n	0.00	0	2.5	0	4;1	n	0.00	0	2.5	0	3;2	n	0.40	1	1.5	1	2;1	n	0.00	0	1.5	0	0;3	n	ENSMUSG00000035620.16	Ric8b	chr10	protein_coding	RIC8 guanine nucleotide exchange factor B
novel_NIR_2167	chr10	84950751	84956522	+	84950751	84956085	3pMXE	ENSMUST00000216771.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000060935.7	Tmem263	chr10	protein_coding	transmembrane protein 263
novel_NIR_2168	chr10	85743934	85744171	-	85743934	85744160	A5SS	ENSMUST00000219370.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000035529.11	Prdm4	chr10	protein_coding	PR domain containing 4
novel_NIR_2169	chr10	85743934	85744171	-	85743934	85746087	A5SS	ENSMUST00000220032.2	novel	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	21	0	21	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.00	0	11	0	11	n	0.25	2	6	2	6	y	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.08	1	12	1	12	n	ENSMUSG00000035529.11	Prdm4	chr10	protein_coding	PR domain containing 4
novel_NIR_2170	chr10	85939067	85970850	-	85916213	85970850	A3SS	ENSMUST00000120638.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000059602.15	Syn3	chr10	protein_coding	synapsin III
novel_NIR_2171	chr10	86048417	86187415	-	85970912	86187415	A3SS	ENSMUST00000120638.8	novel	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.25	1	3	1	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.50	1	1	1	1	n	ENSMUSG00000059602.15	Syn3	chr10	protein_coding	synapsin III
novel_NIR_2172	chr10	86048417	86187415	-	86130515	86187415	3pMXE	ENSMUST00000121789.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000059602.15	Syn3	chr10	protein_coding	synapsin III
novel_NIR_2173	chr10	86158171	86187415	-	85970912	86187415	A3SS	ENSMUST00000120638.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.75	3	1	3	1	y	ENSMUSG00000059602.15	Syn3	chr10	protein_coding	synapsin III
novel_NIR_2174	chr10	86158171	86187415	-	86130515	86187415	A3SS	ENSMUST00000121789.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000059602.15	Syn3	chr10	protein_coding	synapsin III
novel_NIR_2175	chr10	8632525	8632701	-	8632525	8637859	A5SS	ENSMUST00000212553.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000015305.7	Sash1	chr10	protein_coding	SAM and SH3 domain containing 1
novel_NIR_2176	chr10	86534059	86534183	-	86531827	86534183	A3SS	ENSMUST00000129413.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000020048.14	Hsp90b1	chr10	protein_coding	heat shock protein 90, beta (Grp94), member 1
novel_NIR_2177	chr10	86569658	86572745	+	86569658	86572665	A3SS	ENSMUST00000075632.14	novel	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.40	2	3	2	3	y	0.29	2	5	2	5	y	0.00	0	6	0	6	n	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000044937.16	Ttc41	chr10	protein_coding	tetratricopeptide repeat domain 41
novel_NIR_2178	chr10	86572863	86578742	+	86572863	86586111	A3SS	ENSMUST00000219476.2	novel	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000044937.16	Ttc41	chr10	protein_coding	tetratricopeptide repeat domain 41
novel_NIR_2179	chr10	86572863	86594122	+	86572863;86586250	86586111;86594122	ES	ENSMUST00000219476.2	novel	0.00	0	2.0	0	2;2	n	0.00	0	4.0	0	1;7	n	0.00	0	7.0	0	2;12	n	0.00	0	0.5	0	0;1	n	0.00	0	4.5	0	1;8	n	0.00	0	1.5	0	0;3	n	0.25	2	6.0	2	1;11	y	0.00	0	3.5	0	1;6	n	0.00	0	2.0	0	2;2	n	0.00	0	2.0	0	0;4	n	0.00	0	3.5	0	0;7	n	0.00	0	2.0	0	0;4	n	ENSMUSG00000044937.16	Ttc41	chr10	protein_coding	tetratricopeptide repeat domain 41
novel_NIR_2180	chr10	86572863	86594122	+	86589517	86594122	5pMXE	ENSMUST00000219070.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000044937.16	Ttc41	chr10	protein_coding	tetratricopeptide repeat domain 41
novel_NIR_2181	chr10	86572863;86578886	86578742;86580290	+	86572863	86580290	cassetteExon	ENSMUST00000075632.14	novel	0.00	0.0	7	0;0	7	n	1.00	0.5	0	1;0	0	n	0.00	0.0	8	0;0	8	n	0.25	1.0	3	1;1	3	n	0.03	0.5	14	0;1	14	n	0.25	1.0	3	0;2	3	n	0.00	0.0	4	0;0	4	n	0.00	0.0	5	0;0	5	n	0.11	0.5	4	1;0	4	n	0.50	2.0	2	2;2	2	y	0.04	0.5	11	0;1	11	n	0.00	0.0	3	0;0	3	n	ENSMUSG00000044937.16	Ttc41	chr10	protein_coding	tetratricopeptide repeat domain 41
novel_NIR_2182	chr10	86578886	86580290	+	86572863	86580290	A5SS	ENSMUST00000075632.14	novel	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.25	1	3	1	3	n	0.07	1	14	1	14	n	0.40	2	3	2	3	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.50	2	2	2	2	n	0.08	1	11	1	11	n	0.00	0	3	0	3	n	ENSMUSG00000044937.16	Ttc41	chr10	protein_coding	tetratricopeptide repeat domain 41
novel_NIR_2183	chr10	86586250	86587322	+	86586250	86594122	A3SS	ENSMUST00000075632.14	novel	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	1	0	1	n	0.20	2	8	2	8	y	0.25	1	3	1	3	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.20	1	4	1	4	n	ENSMUSG00000044937.16	Ttc41	chr10	protein_coding	tetratricopeptide repeat domain 41
novel_NIR_2184	chr10	86595040	86596611	+	86595040	86596630	A3SS	ENSMUST00000219070.2	novel	0.00	0	6	0	6	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000044937.16	Ttc41	chr10	protein_coding	tetratricopeptide repeat domain 41
novel_NIR_2185	chr10	86595100	86596611	+	86595100	86596630	A3SS	ENSMUST00000075632.14	novel	0.12	1	7	1	7	n	0.00	0	7	0	7	n	0.07	1	13	1	13	n	0.20	1	4	1	4	n	0.20	2	8	2	8	y	0.00	0	4	0	4	n	0.11	1	8	1	8	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	ENSMUSG00000044937.16	Ttc41	chr10	protein_coding	tetratricopeptide repeat domain 41
novel_NIR_2186	chr10	86656634	86656751	+	86656634	86656774	A3SS	ENSMUST00000218802.2	novel	0.00	0	15	0	15	n	0.00	0	3	0	3	n	0.10	1	9	1	9	n	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.17	2	10	2	10	y	0.00	0	4	0	4	n	0.00	0	20	0	20	n	0.15	2	11	2	11	y	0.06	1	17	1	17	n	ENSMUSG00000112743.2	Gm49358	chr10	protein_coding	predicted gene, 49358
novel_NIR_2187	chr10	86684917	86686591	-	86684917	86686642	A5SS	ENSMUST00000219341.3	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000035459.19	Stab2	chr10	protein_coding	stabilin 2
novel_NIR_2188	chr10	86693697	86693972	-	86692606	86693972	A3SS	ENSMUST00000219341.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035459.19	Stab2	chr10	protein_coding	stabilin 2
novel_NIR_2189	chr10	86703101	86703205	-	86703101	86704886	A5SS	ENSMUST00000035288.17	novel	0.00	0	27	0	27	n	0.00	0	16	0	16	n	0.36	4	7	4	7	y	0.00	0	18	0	18	n	0.00	0	27	0	27	n	0.00	0	10	0	10	n	0.00	0	27	0	27	n	0.00	0	15	0	15	n	0.00	0	18	0	18	n	0.00	0	22	0	22	n	0.00	0	20	0	20	n	0.05	1	19	1	19	n	ENSMUSG00000035459.19	Stab2	chr10	protein_coding	stabilin 2
novel_NIR_2190	chr10	86714813	86716060	-	86714813	86719648	A5SS	ENSMUST00000035288.17	novel	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	19	0	19	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.17	2	10	2	10	y	0.18	4	18	4	18	y	ENSMUSG00000035459.19	Stab2	chr10	protein_coding	stabilin 2
novel_NIR_2191	chr10	86721565	86721937	-	86721565	86723636	A5SS	ENSMUST00000035288.17	novel	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.18	2	9	2	9	y	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000035459.19	Stab2	chr10	protein_coding	stabilin 2
novel_NIR_2192	chr10	86721565	86722312	-	86721565	86723636	A5SS	ENSMUST00000035288.17	novel	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.33	1	2	1	2	n	0.40	2	3	2	3	y	ENSMUSG00000035459.19	Stab2	chr10	protein_coding	stabilin 2
novel_NIR_2193	chr10	86743295	86752252	-	86743295	86754880	A5SS	ENSMUST00000035288.17	novel	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	ENSMUSG00000035459.19	Stab2	chr10	protein_coding	stabilin 2
novel_NIR_2194	chr10	86752373	86754880	-	86743295	86754880	A3SS	ENSMUST00000035288.17	novel	0.25	1	3	1	3	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.10	1	9	1	9	n	0.09	1	10	1	10	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.00	0	7	0	7	n	0.00	0	7	0	7	n	ENSMUSG00000035459.19	Stab2	chr10	protein_coding	stabilin 2
novel_NIR_2195	chr10	86752373	86754880	-	86754733	86754880	3pMXE	ENSMUST00000218408.2	novel	0.17	1	5	1	5	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.33	2	4	2	4	y	0.00	0	7	0	7	n	-	-	-	-	-	-	ENSMUSG00000035459.19	Stab2	chr10	protein_coding	stabilin 2
novel_NIR_2196	chr10	86760286	86762461	-	86760308	86762461	A3SS	ENSMUST00000035288.17	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	8	0	8	n	0.40	2	3	2	3	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.50	4	4	4	4	y	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	7	0	7	n	ENSMUSG00000035459.19	Stab2	chr10	protein_coding	stabilin 2
novel_NIR_2197	chr10	87382778	87390208	+	87382593	87390208	A5SS	ENSMUST00000217864.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.50	3	3	3	3	y	0.54	7	6	7	6	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020051.18	Pah	chr10	protein_coding	phenylalanine hydroxylase
novel_NIR_2198	chr10	87695006	87695193	+	87694875	87695193	A5SS	ENSMUST00000122386.8	novel	0.68	25	12	25	12	y	0.70	16	7	16	7	y	0.89	62	8	62	8	y	0.77	27	8	27	8	y	0.58	32	23	32	23	y	0.82	23	5	23	5	y	0.57	32	24	32	24	y	0.71	24	10	24	10	y	0.75	24	8	24	8	y	0.87	33	5	33	5	y	0.91	31	3	31	3	y	0.59	20	14	20	14	y	ENSMUSG00000020053.19	Igf1	chr10	protein_coding	insulin-like growth factor 1
novel_NIR_2199	chr10	87695274	87697158	+	87695501	87697158	5pMXE	ENSMUST00000121952.8	novel	0.06	4	60	4	60	n	0.03	2	62	2	62	n	0.56	79	61	79	61	y	0.05	5	101	5	101	n	0.08	7	80	7	80	n	0.22	13	47	13	47	y	0.05	4	72	4	72	n	0.06	3	47	3	47	n	0.02	1	64	1	64	n	0.07	5	71	5	71	n	0.00	0	69	0	69	n	0.06	7	103	7	103	n	ENSMUSG00000020053.19	Igf1	chr10	protein_coding	insulin-like growth factor 1
novel_NIR_2200	chr10	87695472	87697158	+	87695501	87697158	A5SS	ENSMUST00000121952.8	novel	0.35	33	60	33	60	y	0.14	10	62	10	62	n	0.00	0	61	0	61	n	0.21	27	101	27	101	y	0.25	27	80	27	80	y	0.00	0	47	0	47	n	0.28	28	72	28	72	y	0.08	4	47	4	47	n	0.33	31	64	31	64	y	0.32	34	71	34	71	y	0.34	35	69	35	69	y	0.22	29	103	29	103	y	ENSMUSG00000020053.19	Igf1	chr10	protein_coding	insulin-like growth factor 1
novel_NIR_2201	chr10	87695629	87697158	+	87695501	87697158	A5SS	ENSMUST00000121952.8	novel	0.00	0	60	0	60	n	0.00	0	62	0	62	n	0.29	25	61	25	61	y	0.00	0	101	0	101	n	0.00	0	80	0	80	n	0.22	13	47	13	47	y	0.00	0	72	0	72	n	0.25	16	47	16	47	y	0.00	0	64	0	64	n	0.00	0	71	0	71	n	0.00	0	69	0	69	n	0.19	24	103	24	103	y	ENSMUSG00000020053.19	Igf1	chr10	protein_coding	insulin-like growth factor 1
novel_NIR_2202	chr10	87696454	87697158	+	87695501	87697158	A5SS	ENSMUST00000121952.8	novel	0.15	11	60	11	60	y	0.09	6	62	6	62	n	0.03	2	61	2	61	n	0.14	16	101	16	101	n	0.01	1	80	1	80	n	0.06	3	47	3	47	n	0.10	8	72	8	72	n	0.10	5	47	5	47	n	0.12	9	64	9	64	n	0.16	14	71	14	71	y	0.05	4	69	4	69	n	0.11	13	103	13	103	n	ENSMUSG00000020053.19	Igf1	chr10	protein_coding	insulin-like growth factor 1
novel_NIR_2203	chr10	87983031	87984072	+	87983031	87984024	A3SS	ENSMUST00000169309.3	novel	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	ENSMUSG00000035351.17	Nup37	chr10	protein_coding	nucleoporin 37
novel_NIR_2204	chr10	8810035	8817210	+	8787438	8817210	A5SS	ENSMUST00000215873.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000111731.2	Gm48727	chr10	lncRNA	predicted gene, 48727
novel_NIR_2205	chr10	88248508	88250533	+	88248508	88250255	3pMXE	ENSMUST00000127615.8	novel	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.40	2	3	2	3	y	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	ENSMUSG00000035311.17	Gnptab	chr10	protein_coding	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits
novel_NIR_2206	chr10	88250460	88250533	+	88250460	88254987	A3SS	ENSMUST00000151273.8	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.14	1	6	1	6	n	0.00	0	13	0	13	n	0.18	2	9	2	9	y	0.08	1	12	1	12	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	ENSMUSG00000035311.17	Gnptab	chr10	protein_coding	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits
novel_NIR_2207	chr10	88309313	88311288	-	88288959	88311288	A3SS	ENSMUST00000134318.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000060002.15	Chpt1	chr10	protein_coding	choline phosphotransferase 1
novel_NIR_2208	chr10	88309313	88311288	-	88307322	88311288	A3SS	ENSMUST00000148899.8	novel	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	4	0	4	0	y	1.00	1	0	1	0	n	0.17	1	5	1	5	n	ENSMUSG00000060002.15	Chpt1	chr10	protein_coding	choline phosphotransferase 1
novel_NIR_2209	chr10	88310135	88311288	-	88288959	88311288	A3SS	ENSMUST00000134318.8	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	ENSMUSG00000060002.15	Chpt1	chr10	protein_coding	choline phosphotransferase 1
novel_NIR_2210	chr10	88310135	88311288	-	88307322	88311288	A3SS	ENSMUST00000148899.8	novel	0.33	1	2	1	2	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	5	0	5	0	y	0.00	0	5	0	5	n	ENSMUSG00000060002.15	Chpt1	chr10	protein_coding	choline phosphotransferase 1
novel_NIR_2211	chr10	88409391	88410991	-	88409391	88417869	A5SS	ENSMUST00000121629.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.85	67	12	67	12	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020061.19	Mybpc1	chr10	protein_coding	myosin binding protein C, slow-type
novel_NIR_2212	chr10	88409391	88410991	-	88409391	88421522	A5SS	ENSMUST00000119185.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.91	67	7	67	7	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020061.19	Mybpc1	chr10	protein_coding	myosin binding protein C, slow-type
novel_NIR_2213	chr10	88411742	88417869	-	88409391	88417869	A3SS	ENSMUST00000121629.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	12	12	12	12	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020061.19	Mybpc1	chr10	protein_coding	myosin binding protein C, slow-type
novel_NIR_2214	chr10	88411742	88421522	-	88409391	88421522	A3SS	ENSMUST00000119185.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.53	8	7	8	7	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020061.19	Mybpc1	chr10	protein_coding	myosin binding protein C, slow-type
novel_NIR_2215	chr10	88411742	88421522	-	88417910	88421522	A3SS&ES	ENSMUST00000121629.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.17	8	40	8	40	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020061.19	Mybpc1	chr10	protein_coding	myosin binding protein C, slow-type
novel_NIR_2216	chr10	88513756	88514386	-	88513470	88514386	A3SS	ENSMUST00000004473.15	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.67	2	1	2	1	y	ENSMUSG00000004359.17	Spic	chr10	protein_coding	Spi-C transcription factor (Spi-1/PU.1 related)
novel_NIR_2217	chr10	88613843	88613972	-	88613411	88613972	A3SS	ENSMUST00000219662.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000004356.9	Utp20	chr10	protein_coding	UTP20 small subunit processome component
novel_NIR_2218	chr10	88618578	88620525	-	88618578	88621852	A5SS	ENSMUST00000004470.9	novel	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.11	1	8	1	8	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.40	2	3	2	3	y	0.00	0	7	0	7	n	0.00	0	8	0	8	n	ENSMUSG00000004356.9	Utp20	chr10	protein_coding	UTP20 small subunit processome component
novel_NIR_2219	chr10	89352433	89353319	-	89352433	89369265	A5SS	ENSMUST00000105297.2	novel	0.18	16	73	16	73	y	0.14	11	68	11	68	n	0.00	0	56	0	56	n	0.08	6	69	6	69	n	0.18	25	114	25	114	y	0.07	3	38	3	38	n	0.11	11	86	11	86	n	0.10	8	69	8	69	n	0.19	18	76	18	76	y	0.15	17	98	17	98	y	0.12	10	74	10	74	n	0.13	13	89	13	89	n	ENSMUSG00000047638.16	Nr1h4	chr10	protein_coding	nuclear receptor subfamily 1, group H, member 4
novel_NIR_2220	chr10	89352433;89368477	89368358;89369265	-	89352433	89369265	cassetteExon	ENSMUST00000105297.2	novel	0.15	12.5	73	0;25	73	n	0.07	5.5	68	0;11	68	n	0.25	19.0	56	3;35	56	y	0.19	16.0	69	0;32	69	n	0.16	22.0	114	0;44	114	n	0.20	9.5	38	0;19	38	n	0.13	12.5	86	0;25	86	n	0.10	7.5	69	0;15	69	n	0.11	9.0	76	0;18	76	n	0.16	19.0	98	0;38	98	n	0.12	10.5	74	0;21	74	n	0.10	10.0	89	0;20	89	n	ENSMUSG00000047638.16	Nr1h4	chr10	protein_coding	nuclear receptor subfamily 1, group H, member 4
novel_NIR_2221	chr10	89368477	89369265	-	89352433	89369265	A3SS	ENSMUST00000105297.2	novel	0.26	25	73	25	73	y	0.14	11	68	11	68	n	0.38	35	56	35	56	n	0.32	32	69	32	69	y	0.28	44	114	44	114	y	0.33	19	38	19	38	n	0.23	25	86	25	86	y	0.18	15	69	15	69	y	0.19	18	76	18	76	y	0.28	38	98	38	98	y	0.22	21	74	21	74	y	0.18	20	89	20	89	y	ENSMUSG00000047638.16	Nr1h4	chr10	protein_coding	nuclear receptor subfamily 1, group H, member 4
novel_NIR_2222	chr10	89434613	89435167	-	89434613	89435414	A5SS	ENSMUST00000105295.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000019935.17	Slc17a8	chr10	protein_coding	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8
novel_NIR_2223	chr10	89434613	89435167	-	89434613	89436065	A5SS	ENSMUST00000020102.14	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.33	3	6	3	6	y	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000019935.17	Slc17a8	chr10	protein_coding	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8
novel_NIR_2224	chr10	89442730	89460007	-	89442730	89456661	5pMXE	ENSMUST00000020102.14	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000019935.17	Slc17a8	chr10	protein_coding	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8
novel_NIR_2225	chr10	89442730	89467785	-	89442730	89456661	5pMXE	ENSMUST00000020102.14	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.40	2	3	2	3	y	-	-	-	-	-	-	0.60	3	2	3	2	y	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.67	2	1	2	1	y	-	-	-	-	-	-	ENSMUSG00000019935.17	Slc17a8	chr10	protein_coding	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8
novel_NIR_2226	chr10	89509264	89514140	-	89505664	89514140	A3SS	ENSMUST00000174252.8	novel	0.00	0	29	0	29	n	0.00	0	19	0	19	n	0.00	0	29	0	29	n	0.00	0	36	0	36	n	0.00	0	36	0	36	n	0.00	0	21	0	21	n	0.00	0	19	0	19	n	0.00	0	27	0	27	n	0.00	0	12	0	12	n	0.03	1	36	1	36	n	0.17	3	15	3	15	y	0.00	0	19	0	19	n	ENSMUSG00000069539.12	Scyl2	chr10	protein_coding	SCY1-like 2 (S. cerevisiae)
novel_NIR_2227	chr10	89525184	89529661	+	89525184	89534025	A3SS	ENSMUST00000181598.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000097383.2	1500026H17Rik	chr10	lncRNA	RIKEN cDNA 1500026H17 gene
novel_NIR_2228	chr10	89581150	89588182	+	89581150	89611801	A3SS	ENSMUST00000220375.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000019951.11	Uhrf1bp1l	chr10	protein_coding	UHRF1 (ICBP90) binding protein 1-like
novel_NIR_2229	chr10	90957905	90958069	-	90955568	90958069	A3SS	ENSMUST00000170810.8	novel	1.00	10	0	10	0	y	0.45	5	6	5	6	y	0.57	4	3	4	3	y	1.00	3	0	3	0	y	0.67	8	4	8	4	y	1.00	1	0	1	0	n	0.04	6	131	6	131	n	1.00	3	0	3	0	y	1.00	4	0	4	0	y	0.50	4	4	4	4	y	0.88	7	1	7	1	y	0.00	0	3	0	3	n	ENSMUSG00000061904.13	Slc25a3	chr10	protein_coding	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3
novel_NIR_2230	chr10	90959257	90959420	-	90958193	90959420	A3SS	ENSMUST00000163246.8	novel	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.15	2	11	2	11	y	0.40	6	9	6	9	y	0.00	0	10	0	10	n	0.01	1	123	1	123	n	0.00	0	4	0	4	n	0.09	1	10	1	10	n	0.17	3	15	3	15	y	0.18	2	9	2	9	n	0.00	0	11	0	11	n	ENSMUSG00000061904.13	Slc25a3	chr10	protein_coding	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3
novel_NIR_2231	chr10	92905796	92908470	-	92905796	92905877	5pMXE	ENSMUST00000171781.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020014.19	Cfap54	chr10	protein_coding	cilia and flagella associated protein 54
novel_NIR_2232	chr10	92905796	92908470	-	92905796	92917127	A5SS	ENSMUST00000168110.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000020014.19	Cfap54	chr10	protein_coding	cilia and flagella associated protein 54
novel_NIR_2233	chr10	92912984	92927699	+	92920301	92927699	5pMXE	ENSMUST00000214199.2	novel	1.00	6	0	6	0	y	1.00	8	0	8	0	y	1.00	1	0	1	0	n	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	27	0	27	0	y	1.00	15	0	15	0	y	1.00	12	0	12	0	y	1.00	1	0	1	0	n	ENSMUSG00000111013.2	Gm32468	chr10	lncRNA	predicted gene, 32468
novel_NIR_2234	chr10	92912984	92927699	+	92921148	92927699	5pMXE	ENSMUST00000214288.2	novel	1.00	6	0	6	0	y	1.00	8	0	8	0	y	1.00	1	0	1	0	n	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	27	0	27	0	y	1.00	15	0	15	0	y	1.00	12	0	12	0	y	1.00	1	0	1	0	n	ENSMUSG00000111013.2	Gm32468	chr10	lncRNA	predicted gene, 32468
novel_NIR_2235	chr10	93044180	93047681	+	93044180	93047773	A3SS	ENSMUST00000215495.2	novel	0.00	0	10	0	10	n	0.20	2	8	2	8	y	0.00	0	43	0	43	n	0.00	0	16	0	16	n	0.00	0	30	0	30	n	0.00	0	20	0	20	n	0.07	1	14	1	14	n	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.00	0	21	0	21	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	ENSMUSG00000020015.11	Cdk17	chr10	protein_coding	cyclin-dependent kinase 17
novel_NIR_2236	chr10	93722963	93725230	-	93722963	93723283	5pMXE	ENSMUST00000216232.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036112.16	Metap2	chr10	protein_coding	methionine aminopeptidase 2
novel_NIR_2237	chr10	93722963	93725230	-	93722963	93725634	A5SS	ENSMUST00000215642.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036112.16	Metap2	chr10	protein_coding	methionine aminopeptidase 2
novel_NIR_2238	chr10	93820343	93826002	-	93824623	93826002	3pMXE	ENSMUST00000150704.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000036099.17	Vezt	chr10	protein_coding	vezatin, adherens junctions transmembrane protein
novel_NIR_2239	chr10	93825433	93826002	-	93824623	93826002	A3SS	ENSMUST00000150704.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036099.17	Vezt	chr10	protein_coding	vezatin, adherens junctions transmembrane protein
novel_NIR_2240	chr10	93909369	93910045	+	93881495	93910045	A5SS	ENSMUST00000020208.5	novel	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	32	0	32	n	0.00	0	29	0	29	n	0.17	2	10	2	10	y	0.00	0	20	0	20	n	0.00	0	26	0	26	n	0.00	0	24	0	24	n	0.00	0	6	0	6	n	0.00	0	32	0	32	n	0.00	0	18	0	18	n	0.00	0	21	0	21	n	ENSMUSG00000020021.5	Fgd6	chr10	protein_coding	FYVE, RhoGEF and PH domain containing 6
novel_NIR_2241	chr10	93909369	93910045	+	93908483	93910045	A5SS	ENSMUST00000141143.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	ENSMUSG00000020021.5	Fgd6	chr10	protein_coding	FYVE, RhoGEF and PH domain containing 6
novel_NIR_2242	chr10	93985066	93992769	+	93983964	93992769	A5SS	ENSMUST00000105290.9	novel	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.10	1	9	1	9	n	0.00	0	10	0	10	n	0.00	0	17	0	17	n	0.25	2	6	2	6	y	0.11	1	8	1	8	n	0.27	4	11	4	11	y	0.00	0	14	0	14	n	0.00	0	3	0	3	n	0.14	1	6	1	6	n	0.00	0	9	0	9	n	ENSMUSG00000005897.15	Nr2c1	chr10	protein_coding	nuclear receptor subfamily 2, group C, member 1
novel_NIR_2243	chr10	93985066	93992769	+	93984998	93992769	A5SS	ENSMUST00000092213.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000005897.15	Nr2c1	chr10	protein_coding	nuclear receptor subfamily 2, group C, member 1
novel_NIR_2244	chr10	94007999	94009350	+	94007999	94017356	A3SS	ENSMUST00000105290.9	novel	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	31	0	31	n	0.03	1	33	1	33	n	0.00	0	28	0	28	n	0.22	2	7	2	7	y	0.00	0	17	0	17	n	0.04	1	23	1	23	n	0.06	1	17	1	17	n	0.00	0	34	0	34	n	0.08	2	23	2	23	n	0.00	0	43	0	43	n	ENSMUSG00000005897.15	Nr2c1	chr10	protein_coding	nuclear receptor subfamily 2, group C, member 1
novel_NIR_2245	chr10	94010966	94017356	+	94007999	94017356	A5SS	ENSMUST00000105290.9	novel	0.07	1	13	1	13	n	0.14	1	6	1	6	n	0.00	0	31	0	31	n	0.00	0	33	0	33	n	0.07	2	28	2	28	n	0.00	0	7	0	7	n	0.15	3	17	3	17	y	0.00	0	23	0	23	n	0.00	0	17	0	17	n	0.06	2	34	2	34	n	0.00	0	23	0	23	n	0.07	3	43	3	43	n	ENSMUSG00000005897.15	Nr2c1	chr10	protein_coding	nuclear receptor subfamily 2, group C, member 1
novel_NIR_2246	chr10	94039237	94040137	+	94039237	94051201	A3SS	ENSMUST00000135292.3	novel	0.40	2	3	2	3	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	1.00	2	0	2	0	y	ENSMUSG00000020022.18	Ndufa12	chr10	protein_coding	NADH:ubiquinone oxidoreductase subunit A12
novel_NIR_2247	chr10	94039237	94056528	+	94039237	94051201	A3SS&ES	ENSMUST00000135292.3	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	1.00	5	0	5	0	y	0.50	3	3	3	3	y	0.67	2	1	2	1	y	0.67	2	1	2	1	y	0.60	3	2	3	2	y	-	-	-	-	-	-	0.50	1	1	1	1	n	0.40	2	3	2	3	y	0.71	5	2	5	2	y	-	-	-	-	-	-	ENSMUSG00000020022.18	Ndufa12	chr10	protein_coding	NADH:ubiquinone oxidoreductase subunit A12
novel_NIR_2248	chr10	94211295	94266385	+	94148064	94266385	A5SS	ENSMUST00000147869.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000020023.19	Tmcc3	chr10	protein_coding	transmembrane and coiled coil domains 3
novel_NIR_2249	chr10	94574926	94575919	+	94573886	94575919	A5SS	ENSMUST00000020212.6	novel	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.00	0	14	0	14	n	0.30	3	7	3	7	y	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.00	0	17	0	17	n	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	23	0	23	n	ENSMUSG00000020024.8	Cep83	chr10	protein_coding	centrosomal protein 83
novel_NIR_2250	chr10	95138795	95158448	-	95048751	95158448	A3SS	ENSMUST00000218761.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	ENSMUSG00000045867.11	Cradd	chr10	protein_coding	CASP2 and RIPK1 domain containing adaptor with death domain
novel_NIR_2251	chr10	95138795	95158448	-	95147086	95158448	3pMXE	ENSMUST00000218651.2	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.60	3	2	3	2	y	0.33	1	2	1	2	n	0.00	0	7	0	7	n	ENSMUSG00000045867.11	Cradd	chr10	protein_coding	CASP2 and RIPK1 domain containing adaptor with death domain
novel_NIR_2252	chr10	95138795	95158448	-	95157803	95158448	3pMXE	ENSMUST00000220446.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000045867.11	Cradd	chr10	protein_coding	CASP2 and RIPK1 domain containing adaptor with death domain
novel_NIR_2253	chr10	95158747	95159331	-	95158751	95159331	A3SS	ENSMUST00000217809.2	novel	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.00	0	19	0	19	n	0.18	2	9	2	9	y	0.00	0	18	0	18	n	0.40	2	3	2	3	y	0.12	3	23	3	23	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.36	4	7	4	7	y	0.00	0	19	0	19	n	0.00	0	23	0	23	n	ENSMUSG00000045867.11	Cradd	chr10	protein_coding	CASP2 and RIPK1 domain containing adaptor with death domain
novel_NIR_2254	chr10	95158747	95159863	-	95158751	95159863	A3SS	ENSMUST00000218651.2	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.40	2	3	2	3	y	0.20	1	4	1	4	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	ENSMUSG00000045867.11	Cradd	chr10	protein_coding	CASP2 and RIPK1 domain containing adaptor with death domain
novel_NIR_2255	chr10	95257537	95264000	+	95257537;95258857	95258717;95264000	ES	ENSMUST00000181781.2	novel	0.50	1	1.0	1	0;2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	0.29	1	2.5	1	2;3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2.0	0	0;4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.86	3	0.5	3	1;0	y	ENSMUSG00000097766.2	5730420D15Rik	chr10	lncRNA	RIKEN cDNA 5730420D15 gene
novel_NIR_2256	chr10	95326274	95326649	-	95326274	95326397	A5SS&ES	ENSMUST00000219019.2	novel	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.50	2	2	2	2	y	0.00	0	7	0	7	n	0.00	0	5	0	5	n	ENSMUSG00000062981.6	Mrpl42	chr10	protein_coding	mitochondrial ribosomal protein L42
novel_NIR_2257	chr10	95326443	95326649	-	95326443	95329493	A5SS	ENSMUST00000219019.2	novel	0.50	1	1	1	1	n	0.50	1	1	1	1	n	0.33	1	2	1	2	n	1.00	2	0	2	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.33	2	4	2	4	y	-	-	-	-	-	-	0.83	5	1	5	1	n	0.33	2	4	2	4	y	ENSMUSG00000062981.6	Mrpl42	chr10	protein_coding	mitochondrial ribosomal protein L42
novel_NIR_2258	chr10	95336384	95343176	-	95336384	95337752	5pMXE	ENSMUST00000075829.3	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000062981.6	Mrpl42	chr10	protein_coding	mitochondrial ribosomal protein L42
novel_NIR_2259	chr10	95385725	95387311	-	95385722	95387311	A3SS	ENSMUST00000020217.7	novel	0.33	119	238	119	238	y	0.26	73	203	73	203	y	0.29	166	403	166	403	y	0.30	131	310	131	310	y	0.33	180	368	180	368	y	0.26	60	169	60	169	y	0.27	132	359	132	359	y	0.26	63	183	63	183	y	0.31	92	204	92	204	y	0.30	141	336	141	336	y	0.28	94	240	94	240	y	0.28	131	336	131	336	y	ENSMUSG00000020029.7	Nudt4	chr10	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 4
novel_NIR_2260	chr10	95615896	95616371	+	95609520	95616371	A5SS	ENSMUST00000187483.7	novel	1.00	4	0	4	0	y	0.75	3	1	3	1	y	0.60	3	2	3	2	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	0.67	4	2	4	2	y	1.00	2	0	2	0	y	ENSMUSG00000101517.7	4732465J04Rik	chr10	lncRNA	RIKEN cDNA 4732465J04 gene
novel_NIR_2261	chr10	95616169	95616371	+	95609520	95616371	A5SS	ENSMUST00000187483.7	novel	1.00	21	0	21	0	y	0.97	31	1	31	1	y	0.96	51	2	51	2	y	0.94	30	2	30	2	y	0.97	33	1	33	1	y	1.00	23	0	23	0	y	1.00	38	0	38	0	y	1.00	29	0	29	0	y	1.00	14	0	14	0	y	1.00	44	0	44	0	y	0.94	30	2	30	2	y	1.00	29	0	29	0	y	ENSMUSG00000101517.7	4732465J04Rik	chr10	lncRNA	RIKEN cDNA 4732465J04 gene
novel_NIR_2262	chr10	95616169	95616371	+	95614931	95616371	A5SS	ENSMUST00000185499.2	novel	0.19	21	92	21	92	y	0.22	31	108	31	108	y	0.38	51	84	51	84	y	0.26	30	86	30	86	y	0.25	33	101	33	101	y	0.40	23	34	23	34	y	0.23	38	124	38	124	y	0.39	29	46	29	46	y	0.11	14	119	14	119	n	0.21	44	166	44	166	y	0.24	30	97	30	97	y	0.28	29	75	29	75	y	ENSMUSG00000101517.7	4732465J04Rik	chr10	lncRNA	RIKEN cDNA 4732465J04 gene
novel_NIR_2263	chr10	95616488	95618930	+	95616488	95619590	A3SS	ENSMUST00000187483.7	novel	1.00	2	0	2	0	y	1.00	4	0	4	0	y	0.14	1	6	1	6	n	0.50	4	4	4	4	y	0.00	0	10	0	10	n	0.25	1	3	1	3	n	0.00	0	12	0	12	n	0.33	2	4	2	4	y	1.00	3	0	3	0	y	0.59	10	7	10	7	y	0.40	4	6	4	6	y	-	-	-	-	-	-	ENSMUSG00000101517.7	4732465J04Rik	chr10	lncRNA	RIKEN cDNA 4732465J04 gene
novel_NIR_2264	chr10	95616488	95618930	+	95616488	95627546	A3SS	ENSMUST00000185499.2	novel	0.07	2	26	2	26	n	0.10	4	36	4	36	n	0.04	1	23	1	23	n	0.12	4	30	4	30	n	0.00	0	27	0	27	n	0.06	1	16	1	16	n	0.00	0	52	0	52	n	0.06	2	30	2	30	n	0.11	3	25	3	25	n	0.20	10	41	10	41	y	0.08	4	46	4	46	n	0.00	0	34	0	34	n	ENSMUSG00000101517.7	4732465J04Rik	chr10	lncRNA	RIKEN cDNA 4732465J04 gene
novel_NIR_2265	chr10	95616488	95619593	+	95616488	95619590	A3SS	ENSMUST00000187483.7	novel	1.00	4	0	4	0	y	1.00	4	0	4	0	y	0.68	13	6	13	6	y	0.43	3	4	3	4	y	0.33	5	10	5	10	y	0.25	1	3	1	3	n	0.29	5	12	5	12	y	0.60	6	4	6	4	y	1.00	6	0	6	0	y	0.46	6	7	6	7	y	0.54	7	6	7	6	y	1.00	3	0	3	0	y	ENSMUSG00000101517.7	4732465J04Rik	chr10	lncRNA	RIKEN cDNA 4732465J04 gene
novel_NIR_2266	chr10	95616488	95619593	+	95616488	95627546	A3SS	ENSMUST00000185499.2	novel	0.13	4	26	4	26	n	0.10	4	36	4	36	n	0.36	13	23	13	23	y	0.09	3	30	3	30	n	0.16	5	27	5	27	y	0.06	1	16	1	16	n	0.09	5	52	5	52	n	0.17	6	30	6	30	y	0.19	6	25	6	25	y	0.13	6	41	6	41	n	0.13	7	46	7	46	n	0.08	3	34	3	34	n	ENSMUSG00000101517.7	4732465J04Rik	chr10	lncRNA	RIKEN cDNA 4732465J04 gene
novel_NIR_2267	chr10	95616488	95619737	+	95616488	95619590	A3SS	ENSMUST00000187483.7	novel	1.00	33	0	33	0	y	1.00	23	0	23	0	y	0.75	18	6	18	6	y	0.86	24	4	24	4	y	0.72	26	10	26	10	y	0.79	11	3	11	3	y	0.68	25	12	25	12	y	0.75	12	4	12	4	y	1.00	30	0	30	0	y	0.84	38	7	38	7	y	0.75	18	6	18	6	y	1.00	19	0	19	0	y	ENSMUSG00000101517.7	4732465J04Rik	chr10	lncRNA	RIKEN cDNA 4732465J04 gene
novel_NIR_2268	chr10	95616488	95619737	+	95616488	95627546	A3SS	ENSMUST00000185499.2	novel	0.56	33	26	33	26	y	0.39	23	36	23	36	y	0.44	18	23	18	23	y	0.44	24	30	24	30	y	0.49	26	27	26	27	y	0.41	11	16	11	16	y	0.32	25	52	25	52	y	0.29	12	30	12	30	y	0.55	30	25	30	25	y	0.48	38	41	38	41	y	0.28	18	46	18	46	n	0.36	19	34	19	34	n	ENSMUSG00000101517.7	4732465J04Rik	chr10	lncRNA	RIKEN cDNA 4732465J04 gene
novel_NIR_2269	chr10	95616488	95619740	+	95616488	95619590	A3SS	ENSMUST00000187483.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.30	3	7	3	7	y	0.00	0	6	0	6	n	-	-	-	-	-	-	ENSMUSG00000101517.7	4732465J04Rik	chr10	lncRNA	RIKEN cDNA 4732465J04 gene
novel_NIR_2270	chr10	95616488	95622731	+	95616488	95619590	A3SS&ES	ENSMUST00000187483.7	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	6	0	6	n	0.20	1	4	1	4	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	6	0	6	n	-	-	-	-	-	-	ENSMUSG00000101517.7	4732465J04Rik	chr10	lncRNA	RIKEN cDNA 4732465J04 gene
novel_NIR_2271	chr10	95616488	95625583	+	95616488	95619590	A3SS&ES	ENSMUST00000187483.7	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	6	0	6	n	0.33	2	4	2	4	y	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.20	3	12	3	12	y	0.33	2	4	2	4	y	-	-	-	-	-	-	0.36	4	7	4	7	y	0.00	0	6	0	6	n	-	-	-	-	-	-	ENSMUSG00000101517.7	4732465J04Rik	chr10	lncRNA	RIKEN cDNA 4732465J04 gene
novel_NIR_2272	chr10	95616488	95627523	+	95616488	95619590	A3SS&ES	ENSMUST00000187483.7	novel	1.00	2	0	2	0	y	1.00	3	0	3	0	y	0.00	0	6	0	6	n	0.33	2	4	2	4	y	0.17	2	10	2	10	y	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.22	2	7	2	7	y	0.00	0	6	0	6	n	1.00	2	0	2	0	y	ENSMUSG00000101517.7	4732465J04Rik	chr10	lncRNA	RIKEN cDNA 4732465J04 gene
novel_NIR_2273	chr10	95616488	95630668	+	95616488;95627594	95627546;95630668	ES	ENSMUST00000185499.2	novel	0.16	9	49.0	9	26;72	y	0.23	20	68.0	20	36;100	y	0.11	5	41.0	5	23;59	n	0.12	6	45.0	6	30;60	n	0.25	15	46.0	15	27;65	y	0.23	7	23.5	7	16;31	y	0.15	12	69.0	12	52;86	y	0.11	5	40.0	5	30;50	n	0.02	1	42.0	1	25;59	n	0.15	12	70.5	12	41;100	y	0.10	8	70.0	8	46;94	n	0.15	11	61.0	11	34;88	y	ENSMUSG00000101517.7	4732465J04Rik	chr10	lncRNA	RIKEN cDNA 4732465J04 gene
novel_NIR_2274	chr10	95619845	95620514	+	95619845	95627546	A3SS	ENSMUST00000187483.7	novel	0.00	0	22	0	22	n	0.11	4	34	4	34	n	0.00	0	20	0	20	n	0.00	0	30	0	30	n	0.03	1	29	1	29	n	0.07	1	14	1	14	n	0.10	4	37	4	37	n	0.00	0	12	0	12	n	0.14	3	19	3	19	n	0.15	7	40	7	40	y	0.06	2	33	2	33	n	0.00	0	39	0	39	n	ENSMUSG00000101517.7	4732465J04Rik	chr10	lncRNA	RIKEN cDNA 4732465J04 gene
novel_NIR_2275	chr10	95619845	95622731	+	95619845	95627546	A3SS	ENSMUST00000187483.7	novel	0.08	2	22	2	22	n	0.08	3	34	3	34	n	0.00	0	20	0	20	n	0.25	10	30	10	30	y	0.12	4	29	4	29	n	0.00	0	14	0	14	n	0.12	5	37	5	37	n	0.25	4	12	4	12	y	0.42	14	19	14	19	y	0.05	2	40	2	40	n	0.08	3	33	3	33	n	0.03	1	39	1	39	n	ENSMUSG00000101517.7	4732465J04Rik	chr10	lncRNA	RIKEN cDNA 4732465J04 gene
novel_NIR_2276	chr10	95619845	95625583	+	95619845	95627546	A3SS	ENSMUST00000187483.7	novel	0.21	6	22	6	22	y	0.03	1	34	1	34	n	0.23	6	20	6	20	n	0.00	0	30	0	30	n	0.22	8	29	8	29	y	0.00	0	14	0	14	n	0.05	2	37	2	37	n	0.08	1	12	1	12	n	0.21	5	19	5	19	y	0.05	2	40	2	40	n	0.23	10	33	10	33	y	0.00	0	39	0	39	n	ENSMUSG00000101517.7	4732465J04Rik	chr10	lncRNA	RIKEN cDNA 4732465J04 gene
novel_NIR_2277	chr10	95619845;95625728	95625583;95627546	+	95619845	95627546	cassetteExon	ENSMUST00000187483.7	novel	0.12	3.0	22	6;0	22	n	0.01	0.5	34	1;0	34	n	0.26	7.0	20	6;8	20	y	0.00	0.0	30	0;0	30	n	0.12	4.0	29	8;0	29	n	0.00	0.0	14	0;0	14	n	0.03	1.0	37	2;0	37	n	0.04	0.5	12	1;0	12	n	0.12	2.5	19	5;0	19	n	0.02	1.0	40	2;0	40	n	0.13	5.0	33	10;0	33	n	0.00	0.0	39	0;0	39	n	ENSMUSG00000101517.7	4732465J04Rik	chr10	lncRNA	RIKEN cDNA 4732465J04 gene
novel_NIR_2278	chr10	95625728	95627546	+	95616488	95627546	A5SS	ENSMUST00000185499.2	novel	0.00	0	26	0	26	n	0.00	0	36	0	36	n	0.26	8	23	8	23	y	0.00	0	30	0	30	n	0.00	0	27	0	27	n	0.00	0	16	0	16	n	0.00	0	52	0	52	n	0.00	0	30	0	30	n	0.00	0	25	0	25	n	0.00	0	41	0	41	n	0.00	0	46	0	46	n	0.00	0	34	0	34	n	ENSMUSG00000101517.7	4732465J04Rik	chr10	lncRNA	RIKEN cDNA 4732465J04 gene
novel_NIR_2279	chr10	95650483	95652015	-	95650483	95653488	A5SS	ENSMUST00000218099.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.43	3	4	3	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.75	3	1	3	1	y	1.00	1	0	1	0	n	ENSMUSG00000112771.2	Gm47718	chr10	lncRNA	predicted gene, 47718
novel_NIR_2280	chr10	95650483;95652110	95652015;95653488	-	95650483	95653488	cassetteExon	ENSMUST00000218099.2	novel	0.33	0.5	1	0;1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.38	2.5	4	3;2	4	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	0.5	0	1;0	0	n	0.33	0.5	1	0;1	1	n	0.00	0.0	4	0;0	4	n	0.60	1.5	1	3;0	1	n	1.00	0.5	0	1;0	0	n	ENSMUSG00000112771.2	Gm47718	chr10	lncRNA	predicted gene, 47718
novel_NIR_2281	chr10	95654367	95679542	+	95654367	95684689	A3SS	ENSMUST00000220129.2	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	9	0	9	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	ENSMUSG00000112599.2	Gm47719	chr10	lncRNA	predicted gene, 47719
novel_NIR_2282	chr10	95654367	95683945	+	95654367	95684689	A3SS	ENSMUST00000220129.2	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	ENSMUSG00000112599.2	Gm47719	chr10	lncRNA	predicted gene, 47719
novel_NIR_2283	chr10	95654367	95725672	+	95654367	95684689	3pMXE	ENSMUST00000220129.2	novel	0.00	0	4	0	4	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.25	3	9	3	9	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	ENSMUSG00000112599.2	Gm47719	chr10	lncRNA	predicted gene, 47719
novel_NIR_2284	chr10	95658020	95684689	+	95654367	95684689	A5SS	ENSMUST00000220129.2	novel	0.20	1	4	1	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.60	3	2	3	2	y	0.00	0	4	0	4	n	0.00	0	9	0	9	n	ENSMUSG00000112599.2	Gm47719	chr10	lncRNA	predicted gene, 47719
novel_NIR_2285	chr10	95661846	95678541	-	95661846	95678705	A5SS	ENSMUST00000210336.2	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.56	5	4	5	4	y	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000110353.2	Gm33543	chr10	protein_coding	predicted gene, 33543
novel_NIR_2286	chr10	95661846	95678541	-	95661846;95663992	95663899;95678541	ES	ENSMUST00000211096.2	novel	0.67	1	0.5	1	0;1	n	0.00	0	1.0	0	2;0	n	0.00	0	3.0	0	5;1	n	0.00	0	3.5	0	7;0	n	0.29	5	12.0	5	24;0	y	-	-	-	-	-	-	0.00	0	3.5	0	7;0	n	0.29	1	2.5	1	5;0	n	0.29	2	5.0	2	6;4	y	0.00	0	4.5	0	9;0	n	0.00	0	3.5	0	7;0	n	0.10	1	9.0	1	18;0	n	ENSMUSG00000110353.2	Gm33543	chr10	protein_coding	predicted gene, 33543
novel_NIR_2287	chr10	95661846	95678554	-	95661846	95663899	A5SS&ES	ENSMUST00000211096.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.12	1	7	1	7	n	0.17	5	24	5	24	y	1.00	2	0	2	0	y	0.12	1	7	1	7	n	0.38	3	5	3	5	y	0.00	0	6	0	6	n	0.40	6	9	6	9	y	0.12	1	7	1	7	n	0.33	9	18	9	18	y	ENSMUSG00000110353.2	Gm33543	chr10	protein_coding	predicted gene, 33543
novel_NIR_2288	chr10	95661846	95678554	-	95661846	95678705	A5SS	ENSMUST00000210336.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	0.56	5	4	5	4	y	1.00	2	0	2	0	y	0.33	1	2	1	2	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.86	6	1	6	1	y	1.00	1	0	1	0	n	0.90	9	1	9	1	y	ENSMUSG00000110353.2	Gm33543	chr10	protein_coding	predicted gene, 33543
novel_NIR_2289	chr10	95661902	95663899	-	95661846	95663899	A3SS	ENSMUST00000211096.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.29	2	5	2	5	y	0.12	1	7	1	7	n	0.11	3	24	3	24	n	1.00	1	0	1	0	n	0.12	1	7	1	7	n	0.38	3	5	3	5	y	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.22	5	18	5	18	y	ENSMUSG00000110353.2	Gm33543	chr10	protein_coding	predicted gene, 33543
novel_NIR_2290	chr10	95663992	95678554	-	95663992	95678541	A5SS	ENSMUST00000211096.2	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	2	0	2	0	y	1.00	14	0	14	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	3	0	3	0	y	0.56	5	4	5	4	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	12	0	12	0	y	ENSMUSG00000110353.2	Gm33543	chr10	protein_coding	predicted gene, 33543
novel_NIR_2291	chr10	95663992	95678705	-	95661846	95678705	A3SS	ENSMUST00000210336.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.75	6	2	6	2	y	0.64	7	4	7	4	y	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	4	0	4	0	y	1.00	11	0	11	0	y	0.75	3	1	3	1	y	1.00	3	0	3	0	y	0.89	8	1	8	1	y	ENSMUSG00000110353.2	Gm33543	chr10	protein_coding	predicted gene, 33543
novel_NIR_2292	chr10	95663992	95678705	-	95663992	95678541	A5SS	ENSMUST00000211096.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.75	3	1	3	1	y	1.00	6	0	6	0	y	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	0.73	11	4	11	4	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	8	0	8	0	y	ENSMUSG00000110353.2	Gm33543	chr10	protein_coding	predicted gene, 33543
novel_NIR_2293	chr10	95665574	95678705	-	95661846	95678705	A3SS	ENSMUST00000210336.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000110353.2	Gm33543	chr10	protein_coding	predicted gene, 33543
novel_NIR_2294	chr10	95684246	95684689	+	95654367	95684689	A5SS	ENSMUST00000220129.2	novel	0.43	3	4	3	4	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.10	1	9	1	9	n	ENSMUSG00000112599.2	Gm47719	chr10	lncRNA	predicted gene, 47719
novel_NIR_2295	chr10	95826171	95829286	+	95826171	95826262	A3SS&ES	ENSMUST00000218517.2	novel	0.25	3	9	3	9	y	0.12	1	7	1	7	n	0.26	5	14	5	14	y	0.00	0	13	0	13	n	0.07	1	14	1	14	n	0.38	3	5	3	5	y	0.00	0	11	0	11	n	0.12	1	7	1	7	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	20	0	20	n	ENSMUSG00000036499.10	Eea1	chr10	protein_coding	early endosome antigen 1
novel_NIR_2296	chr10	95826171	95829286	+	95826171;95826327	95826262;95829286	ES	ENSMUST00000218291.2	novel	0.25	3	9.0	3	9;9	y	0.11	1	8.0	1	7;9	n	0.26	5	14.5	5	14;15	y	0.00	0	10.0	0	13;7	n	0.05	1	17.5	1	14;21	n	0.40	3	4.5	3	5;4	y	0.00	0	10.0	0	11;9	n	0.12	1	7.0	1	7;7	n	0.00	0	8.0	0	11;5	n	0.00	0	10.5	0	10;11	n	0.00	0	10.0	0	9;11	n	0.00	0	15.5	0	20;11	n	ENSMUSG00000036499.10	Eea1	chr10	protein_coding	early endosome antigen 1
novel_NIR_2297	chr10	95864449	95867377	+	95864449	95867373	A3SS	ENSMUST00000053484.8	novel	0.00	0	21	0	21	n	0.00	0	20	0	20	n	0.03	1	32	1	32	n	0.00	0	26	0	26	n	0.00	0	43	0	43	n	0.00	0	21	0	21	n	0.07	2	28	2	28	n	0.00	0	16	0	16	n	0.18	2	9	2	9	y	0.00	0	46	0	46	n	0.00	0	30	0	30	n	0.00	0	33	0	33	n	ENSMUSG00000036499.10	Eea1	chr10	protein_coding	early endosome antigen 1
novel_NIR_2298	chr10	96068037	96071728	+	96063182	96071728	A5SS	ENSMUST00000219638.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000112762.2	4930459C07Rik	chr10	lncRNA	RIKEN cDNA 4930459C07 gene
novel_NIR_2299	chr10	96068037	96075910	+	96071840	96075910	A5SS&ES	ENSMUST00000219638.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000112762.2	4930459C07Rik	chr10	lncRNA	RIKEN cDNA 4930459C07 gene
novel_NIR_2300	chr10	96145279	96145444	+	96145284	96145444	A5SS	ENSMUST00000220354.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.44	4	5	4	5	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000112234.2	Gm48427	chr10	lncRNA	predicted gene, 48427
novel_NIR_2301	chr10	9653815	9660085	-	9653815	9665107	A5SS	ENSMUST00000141722.8	novel	0.67	2	1	2	1	y	1.00	2	0	2	0	y	0.33	4	8	4	8	y	0.00	0	5	0	5	n	0.71	5	2	5	2	y	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.55	6	5	6	5	y	0.27	3	8	3	8	y	0.38	3	5	3	5	y	ENSMUSG00000019790.18	Stxbp5	chr10	protein_coding	syntaxin binding protein 5 (tomosyn)
novel_NIR_2302	chr10	9653815	9660085	-	9653815;9659979	9659932;9660085	ES	ENSMUST00000038213.14	novel	0.17	2	10.0	2	8;12	y	0.33	2	4.0	2	3;5	y	0.18	4	18.5	4	16;21	y	0.00	0	4.0	0	3;5	n	0.32	5	10.5	5	13;8	y	0.00	0	6.5	0	8;5	n	0.11	1	8.0	1	7;9	n	0.00	0	6.5	0	9;4	n	0.00	0	3.5	0	3;4	n	0.29	6	15.0	6	11;19	y	0.46	3	3.5	3	3;4	y	0.23	3	10.0	3	13;7	y	ENSMUSG00000019790.18	Stxbp5	chr10	protein_coding	syntaxin binding protein 5 (tomosyn)
novel_NIR_2303	chr10	99295904	99303412	+	99295904	99296819	3pMXE	ENSMUST00000220432.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000112265.2	Gm34983	chr10	lncRNA	predicted gene, 34983
novel_NIR_2304	chr10	99295904	99303412	+	99295904	99319614	A3SS	ENSMUST00000219484.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000112265.2	Gm34983	chr10	lncRNA	predicted gene, 34983
novel_NIR_2305	chr11	100277211	100288462	-	100277211	100288447	A5SS	ENSMUST00000107403.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000001552.15	Jup	chr11	protein_coding	junction plakoglobin
novel_NIR_2306	chr11	100312915	100313455	+	100312915	100313452	A3SS	ENSMUST00000001595.10	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.40	4	6	4	6	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000001555.11	Fkbp10	chr11	protein_coding	FK506 binding protein 10
novel_NIR_2307	chr11	100322103	100323752	-	100322103	100323744	A5SS	ENSMUST00000107399.9	novel	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	19	0	19	n	-	-	-	-	-	-	0.22	2	7	2	7	y	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	ENSMUSG00000017176.18	Nt5c3b	chr11	protein_coding	5'-nucleotidase, cytosolic IIIB
novel_NIR_2308	chr11	100512730	100515018	+	100510640	100515018	A5SS	ENSMUST00000107376.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000017837.13	Nkiras2	chr11	protein_coding	NFKB inhibitor interacting Ras-like protein 2
novel_NIR_2309	chr11	100512730	100515018	+	100511167	100515018	A5SS	ENSMUST00000051947.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000017837.13	Nkiras2	chr11	protein_coding	NFKB inhibitor interacting Ras-like protein 2
novel_NIR_2310	chr11	100512730	100515018	+	100514033	100515018	5pMXE	ENSMUST00000142993.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000017837.13	Nkiras2	chr11	protein_coding	NFKB inhibitor interacting Ras-like protein 2
novel_NIR_2311	chr11	100600315	100601101	-	100600315	100601076	A5SS	ENSMUST00000153526.8	novel	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.11	1	8	1	8	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	ENSMUSG00000020918.15	Kat2a	chr11	protein_coding	K(lysine) acetyltransferase 2A
novel_NIR_2312	chr11	100695824	100699263	-	100695824	100699222	A5SS	ENSMUST00000126266.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	ENSMUSG00000020919.12	Stat5b	chr11	protein_coding	signal transducer and activator of transcription 5B
novel_NIR_2313	chr11	100772011	100772573	+	100772011	100772888	A3SS	ENSMUST00000107357.4	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	ENSMUSG00000004043.15	Stat5a	chr11	protein_coding	signal transducer and activator of transcription 5A
novel_NIR_2314	chr11	100780404	100780712	-	100780366	100780712	A3SS	ENSMUST00000103114.8	novel	0.00	0	28	0	28	n	0.00	0	26	0	26	n	0.00	0	65	0	65	n	0.00	0	50	0	50	n	0.00	0	60	0	60	n	0.16	4	21	4	21	y	0.00	0	45	0	45	n	0.00	0	41	0	41	n	0.03	1	28	1	28	n	0.00	0	45	0	45	n	0.00	0	32	0	32	n	0.02	1	54	1	54	n	ENSMUSG00000004040.17	Stat3	chr11	protein_coding	signal transducer and activator of transcription 3
novel_NIR_2315	chr11	100789649	100794248	-	100789649	100790042	5pMXE	ENSMUST00000156645.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000004040.17	Stat3	chr11	protein_coding	signal transducer and activator of transcription 3
novel_NIR_2316	chr11	100798910	100799486	-	100798837	100799486	A3SS	ENSMUST00000138438.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000004040.17	Stat3	chr11	protein_coding	signal transducer and activator of transcription 3
novel_NIR_2317	chr11	100912008	100917504	+	100912008	100917486	A3SS	ENSMUST00000103110.10	novel	0.06	1	16	1	16	n	0.00	0	10	0	10	n	0.15	11	60	11	60	y	0.00	0	29	0	29	n	0.00	0	32	0	32	n	0.00	0	36	0	36	n	0.00	0	20	0	20	n	0.12	2	14	2	14	n	0.00	0	14	0	14	n	0.03	1	33	1	33	n	0.00	0	20	0	20	n	0.04	1	25	1	25	n	ENSMUSG00000019302.17	Atp6v0a1	chr11	protein_coding	ATPase, H+ transporting, lysosomal V0 subunit A1
novel_NIR_2318	chr11	100912008	100917504	+	100912008	100917507	A3SS	ENSMUST00000154896.8	novel	0.07	1	14	1	14	n	0.00	0	10	0	10	n	0.18	11	51	11	51	y	0.00	0	26	0	26	n	0.00	0	22	0	22	n	0.00	0	26	0	26	n	0.00	0	16	0	16	n	0.06	2	34	2	34	n	0.00	0	13	0	13	n	0.05	1	21	1	21	n	0.00	0	18	0	18	n	0.03	1	29	1	29	n	ENSMUSG00000019302.17	Atp6v0a1	chr11	protein_coding	ATPase, H+ transporting, lysosomal V0 subunit A1
novel_NIR_2319	chr11	100962868	100964686	+	100962868	100964759	A3SS	ENSMUST00000138409.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000001751.10	Naglu	chr11	protein_coding	alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)
novel_NIR_2320	chr11	100963128	100964759	+	100962868	100964759	A5SS	ENSMUST00000138409.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000001751.10	Naglu	chr11	protein_coding	alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)
novel_NIR_2321	chr11	100973931	100975142	+	100973516	100975142	A5SS	ENSMUST00000151056.8	novel	0.43	3	4	3	4	y	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.42	5	7	5	7	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.50	2	2	2	2	y	0.44	4	5	4	5	y	0.00	0	5	0	5	n	ENSMUSG00000001755.13	Coasy	chr11	protein_coding	Coenzyme A synthase
novel_NIR_2322	chr11	100989943	100990499	-	100989446	100990499	A3SS	ENSMUST00000147201.2	novel	-	-	-	-	-	-	0.56	5	4	5	4	y	-	-	-	-	-	-	-	-	-	-	-	-	0.85	11	2	11	2	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	7	0	7	0	y	0.67	2	1	2	1	y	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000017802.15	Retreg3	chr11	protein_coding	reticulophagy regulator family member 3
novel_NIR_2323	chr11	101074338	101074678	+	101074408	101074678	A5SS	ENSMUST00000103109.4	novel	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	14	0	14	n	-	-	-	-	-	-	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000017167.7	Cntnap1	chr11	protein_coding	contactin associated protein-like 1
novel_NIR_2324	chr11	101145002	101145765	+	101145002	101145745	A3SS	ENSMUST00000107280.11	novel	0.00	0	1	0	1	n	0.10	1	9	1	9	n	0.38	3	5	3	5	y	0.11	1	8	1	8	n	0.00	0	8	0	8	n	0.08	1	12	1	12	n	0.09	1	10	1	10	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.14	1	6	1	6	n	0.10	1	9	1	9	n	ENSMUSG00000078656.12	Vps25	chr11	protein_coding	vacuolar protein sorting 25
novel_NIR_2325	chr11	101147779	101149738	+	101147779	101148727	3pMXE	ENSMUST00000007533.15	novel	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.18	2	9	2	9	y	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	21	0	21	n	0.00	0	6	0	6	n	ENSMUSG00000078656.12	Vps25	chr11	protein_coding	vacuolar protein sorting 25
novel_NIR_2326	chr11	101147779	101149738	+	101147779	101149596	A3SS	ENSMUST00000100414.12	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000078656.12	Vps25	chr11	protein_coding	vacuolar protein sorting 25
novel_NIR_2327	chr11	101184973	101185858	-	101184973	101185792	A5SS	ENSMUST00000041403.12	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.60	3	2	3	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035086.14	Becn1	chr11	protein_coding	beclin 1, autophagy related
novel_NIR_2328	chr11	101184973	101185861	-	101184973	101185792	A5SS	ENSMUST00000041403.12	novel	1.00	2	0	2	0	y	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035086.14	Becn1	chr11	protein_coding	beclin 1, autophagy related
novel_NIR_2329	chr11	101184973	101185861	-	101185054	101185861	A3SS	ENSMUST00000126195.2	novel	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035086.14	Becn1	chr11	protein_coding	beclin 1, autophagy related
novel_NIR_2330	chr11	101186404	101187084	-	101185990	101187084	A3SS	ENSMUST00000172233.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000035086.14	Becn1	chr11	protein_coding	beclin 1, autophagy related
novel_NIR_2331	chr11	101186671	101187084	-	101185990	101187084	A3SS	ENSMUST00000172233.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035086.14	Becn1	chr11	protein_coding	beclin 1, autophagy related
novel_NIR_2332	chr11	101207652	101208007	+	101207921	101208007	A5SS&ES	ENSMUST00000142640.8	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.40	4	6	4	6	y	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	2	0	2	n	ENSMUSG00000078652.10	Psme3	chr11	protein_coding	proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki)
novel_NIR_2333	chr11	101217509	101218788	+	101217509	101219170	A3SS	ENSMUST00000041095.14	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000078651.9	Aoc2	chr11	protein_coding	amine oxidase, copper containing 2 (retina-specific)
novel_NIR_2334	chr11	101218893	101219170	+	101217509	101219170	A5SS	ENSMUST00000041095.14	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000078651.9	Aoc2	chr11	protein_coding	amine oxidase, copper containing 2 (retina-specific)
novel_NIR_2335	chr11	101310554	101312387	-	101310554	101312691	A5SS	ENSMUST00000107257.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000097239.8	Gm27029	chr11	protein_coding	predicted gene, 27029
novel_NIR_2336	chr11	101347490	101347779	+	101347490	101348242	A3SS	ENSMUST00000131024.2	novel	0.00	0	4	0	4	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.40	2	3	2	3	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000010358.14	Ifi35	chr11	protein_coding	interferon-induced protein 35
novel_NIR_2337	chr11	101444664	101444814	+	101443411	101444814	A5SS	ENSMUST00000103099.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000017119.21	Nbr1	chr11	protein_coding	NBR1, autophagy cargo receptor
novel_NIR_2338	chr11	101458083	101459225	+	101444924	101459225	A5SS	ENSMUST00000149170.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000017119.21	Nbr1	chr11	protein_coding	NBR1, autophagy cargo receptor
novel_NIR_2339	chr11	101467235	101468022	+	101467235	101468758	A3SS	ENSMUST00000123558.8	novel	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	17	0	17	n	0.33	2	4	2	4	y	0.00	0	9	0	9	n	0.00	0	18	0	18	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	ENSMUSG00000017119.21	Nbr1	chr11	protein_coding	NBR1, autophagy cargo receptor
novel_NIR_2340	chr11	101468077	101468669	+	101468077	101471411	A3SS	ENSMUST00000107208.8	novel	0.00	0	15	0	15	n	0.00	0	15	0	15	n	0.00	0	49	0	49	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.18	3	14	3	14	y	0.00	0	10	0	10	n	0.00	0	16	0	16	n	ENSMUSG00000017119.21	Nbr1	chr11	protein_coding	NBR1, autophagy cargo receptor
novel_NIR_2341	chr11	101477218	101479722	+	101477218	101479679	A3SS	ENSMUST00000039581.14	novel	0.00	0	17	0	17	n	0.00	0	20	0	20	n	0.00	0	33	0	33	n	0.00	0	17	0	17	n	0.00	0	24	0	24	n	0.00	0	10	0	10	n	0.00	0	36	0	36	n	0.17	2	10	2	10	y	0.00	0	26	0	26	n	0.00	0	16	0	16	n	0.00	0	28	0	28	n	0.00	0	29	0	29	n	ENSMUSG00000034947.14	Tmem106a	chr11	protein_coding	transmembrane protein 106A
novel_NIR_2342	chr11	101518890	101519126	+	101518890	101519099	A3SS	ENSMUST00000010506.10	novel	0.00	0	19	0	19	n	0.00	0	22	0	22	n	0.00	0	6	0	6	n	0.00	0	30	0	30	n	0.50	3	3	3	3	y	0.00	0	4	0	4	n	0.00	0	26	0	26	n	-	-	-	-	-	-	0.00	0	21	0	21	n	0.00	0	57	0	57	n	0.00	0	34	0	34	n	0.03	1	34	1	34	n	ENSMUSG00000010362.10	Rdm1	chr11	protein_coding	RAD52 motif 1
novel_NIR_2343	chr11	101521805	101524547	+	101521805	101523841	A3SS&ES	ENSMUST00000133727.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000010362.10	Rdm1	chr11	protein_coding	RAD52 motif 1
novel_NIR_2344	chr11	101675152	101675343	-	101675149	101675343	A3SS	ENSMUST00000164750.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000017724.15	Etv4	chr11	protein_coding	ets variant 4
novel_NIR_2345	chr11	101675152	101675343	-	101675152	101675934	A5SS	ENSMUST00000140970.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000017724.15	Etv4	chr11	protein_coding	ets variant 4
novel_NIR_2346	chr11	101769555	101769639	-	101769555	101770087	A5SS	ENSMUST00000057054.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000001493.10	Meox1	chr11	protein_coding	mesenchyme homeobox 1
novel_NIR_2347	chr11	101769555	101769649	-	101769555	101770087	A5SS	ENSMUST00000057054.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000001493.10	Meox1	chr11	protein_coding	mesenchyme homeobox 1
novel_NIR_2348	chr11	101872669	101875467	-	101872669	101874270	5pMXE	ENSMUST00000151678.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000003518.14	Dusp3	chr11	protein_coding	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)
novel_NIR_2349	chr11	102045507	102046550	-	102045529	102046550	A3SS	ENSMUST00000021296.7	novel	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	20	0	20	n	0.19	3	13	3	13	y	0.00	0	18	0	18	n	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	19	0	19	n	0.00	0	18	0	18	n	ENSMUSG00000020921.7	Tmem101	chr11	protein_coding	transmembrane protein 101
novel_NIR_2350	chr11	102082755	102082861	+	102080969	102082861	A5SS	ENSMUST00000070334.10	novel	0.00	0	13	0	13	n	0.09	1	10	1	10	n	0.08	1	11	1	11	n	0.08	1	12	1	12	n	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.17	4	20	4	20	y	0.00	0	11	0	11	n	0.10	1	9	1	9	n	0.00	0	8	0	8	n	0.33	3	6	3	6	y	0.00	0	11	0	11	n	ENSMUSG00000034793.16	G6pc3	chr11	protein_coding	glucose 6 phosphatase, catalytic, 3
novel_NIR_2351	chr11	102082755	102082861	+	102081262	102082861	A5SS	ENSMUST00000131382.8	novel	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000034793.16	G6pc3	chr11	protein_coding	glucose 6 phosphatase, catalytic, 3
novel_NIR_2352	chr11	102097992	102102908	-	102097992	102104751	A5SS	ENSMUST00000124077.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	ENSMUSG00000008855.18	Hdac5	chr11	protein_coding	histone deacetylase 5
novel_NIR_2353	chr11	102097992	102102908	-	102097992	102120831	A5SS	ENSMUST00000156337.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000008855.18	Hdac5	chr11	protein_coding	histone deacetylase 5
novel_NIR_2354	chr11	102097992	102115560	-	102097992	102120831	A5SS	ENSMUST00000156337.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000008855.18	Hdac5	chr11	protein_coding	histone deacetylase 5
novel_NIR_2355	chr11	102097992	102115560	-	102097992;102109313	102109242;102115560	ES	ENSMUST00000107150.8	novel	0.00	0	13.0	0	22;4	n	0.00	0	11.5	0	19;4	n	0.17	2	10.0	2	14;6	y	0.05	1	21.0	1	26;16	n	0.08	2	22.5	2	30;15	n	0.00	0	10.0	0	15;5	n	0.05	1	19.0	1	26;12	n	0.15	2	11.0	2	14;8	y	0.00	0	17.0	0	22;12	n	0.04	1	27.0	1	39;15	n	0.00	0	19.5	0	29;10	n	0.05	1	18.5	1	21;16	n	ENSMUSG00000008855.18	Hdac5	chr11	protein_coding	histone deacetylase 5
novel_NIR_2356	chr11	102097992	102115560	-	102097992;102109316	102109242;102115560	ES	ENSMUST00000107151.9	novel	0.00	0	12.5	0	22;3	n	0.00	0	11.5	0	19;4	n	0.17	2	9.5	2	14;5	y	0.06	1	14.5	1	26;3	n	0.11	2	16.5	2	30;3	n	0.00	0	10.0	0	15;5	n	0.05	1	18.0	1	26;10	n	0.17	2	9.5	2	14;5	y	0.00	0	15.5	0	22;9	n	0.04	1	25.0	1	39;11	n	0.00	0	18.5	0	29;8	n	0.06	1	15.0	1	21;9	n	ENSMUSG00000008855.18	Hdac5	chr11	protein_coding	histone deacetylase 5
novel_NIR_2357	chr11	102097992	102115560	-	102109607	102115560	3pMXE	ENSMUST00000128686.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.33	1	2	1	2	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000008855.18	Hdac5	chr11	protein_coding	histone deacetylase 5
novel_NIR_2358	chr11	102097992	102115560	-	102110107	102115560	3pMXE	ENSMUST00000125072.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	1.00	1	0	1	0	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.33	1	2	1	2	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	6	0	6	n	1.00	1	0	1	0	n	ENSMUSG00000008855.18	Hdac5	chr11	protein_coding	histone deacetylase 5
novel_NIR_2359	chr11	102175914	102178145	+	102175914	102176806	A3SS&ES	ENSMUST00000156077.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034757.16	Tmub2	chr11	protein_coding	transmembrane and ubiquitin-like domain containing 2
novel_NIR_2360	chr11	102175914	102178145	+	102175914	102178134	A3SS	ENSMUST00000100387.11	novel	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	36	0	36	n	0.00	0	18	0	18	n	0.00	0	22	0	22	n	0.00	0	14	0	14	n	0.00	0	22	0	22	n	0.00	0	18	0	18	n	0.20	3	12	3	12	y	0.00	0	17	0	17	n	0.00	0	23	0	23	n	0.00	0	14	0	14	n	ENSMUSG00000034757.16	Tmub2	chr11	protein_coding	transmembrane and ubiquitin-like domain containing 2
novel_NIR_2361	chr11	102175914	102178145	+	102175914	102178406	A3SS	ENSMUST00000135551.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	1.00	3	0	3	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034757.16	Tmub2	chr11	protein_coding	transmembrane and ubiquitin-like domain containing 2
novel_NIR_2362	chr11	102185885	102186308	-	102185885	102187229	A5SS	ENSMUST00000073234.9	novel	0.57	4	3	4	3	y	0.25	2	6	2	6	y	0.55	11	9	11	9	y	0.00	0	8	0	8	n	0.47	15	17	15	17	y	0.38	5	8	5	8	y	0.55	6	5	6	5	y	0.75	6	2	6	2	y	0.60	3	2	3	2	y	0.75	9	3	9	3	y	0.60	3	2	3	2	y	0.75	3	1	3	1	y	ENSMUSG00000059995.13	Atxn7l3	chr11	protein_coding	ataxin 7-like 3
novel_NIR_2363	chr11	102185885	102186537	-	102185885	102187229	A5SS	ENSMUST00000073234.9	novel	0.00	0	3	0	3	n	0.14	1	6	1	6	n	0.00	0	9	0	9	n	0.27	3	8	3	8	y	0.06	1	17	1	17	n	0.00	0	8	0	8	n	0.38	3	5	3	5	y	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.75	3	1	3	1	y	ENSMUSG00000059995.13	Atxn7l3	chr11	protein_coding	ataxin 7-like 3
novel_NIR_2364	chr11	102267247	102272407	-	102267247	102267629	5pMXE	ENSMUST00000126237.2	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000087330.2	Bloodlinc	chr11	lncRNA	Bloodlinc, erythroid developmental long intergenic non-protein coding transcript
novel_NIR_2365	chr11	102288512	102288923	+	102288512	102288911	A3SS	ENSMUST00000107105.9	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.29	2	5	2	5	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000006575.15	Rundc3a	chr11	protein_coding	RUN domain containing 3A
novel_NIR_2366	chr11	102288512	102288923	+	102288512	102288926	A3SS	ENSMUST00000107103.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000006575.15	Rundc3a	chr11	protein_coding	RUN domain containing 3A
novel_NIR_2367	chr11	102290871	102291492	+	102290871	102291463	A3SS	ENSMUST00000107105.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	ENSMUSG00000006575.15	Rundc3a	chr11	protein_coding	RUN domain containing 3A
novel_NIR_2368	chr11	102290871	102291492	+	102290871	102291487	A3SS	ENSMUST00000107102.8	novel	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.29	2	5	2	5	y	0.50	1	1	1	1	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	5	0	5	n	ENSMUSG00000006575.15	Rundc3a	chr11	protein_coding	RUN domain containing 3A
novel_NIR_2369	chr11	102290871	102291492	+	102290871	102291720	A3SS	ENSMUST00000131219.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000006575.15	Rundc3a	chr11	protein_coding	RUN domain containing 3A
novel_NIR_2370	chr11	102294534	102294617	-	102294361	102294617	A3SS	ENSMUST00000128825.2	novel	0.00	0	7	0	7	n	0.30	6	14	6	14	y	0.00	0	32	0	32	n	0.00	0	9	0	9	n	0.45	15	18	15	18	y	0.00	0	20	0	20	n	0.62	8	5	8	5	y	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	19	0	19	n	0.00	0	7	0	7	n	ENSMUSG00000018677.10	Slc25a39	chr11	protein_coding	solute carrier family 25, member 39
novel_NIR_2371	chr11	102296635	102297032	-	102295905	102297032	A3SS	ENSMUST00000123688.8	novel	0.20	1	4	1	4	n	0.56	5	4	5	4	y	0.33	4	8	4	8	y	0.25	1	3	1	3	n	0.47	7	8	7	8	y	0.57	4	3	4	3	y	0.69	9	4	9	4	y	0.33	1	2	1	2	n	0.33	2	4	2	4	y	0.36	4	7	4	7	y	0.00	0	4	0	4	n	0.31	4	9	4	9	y	ENSMUSG00000018677.10	Slc25a39	chr11	protein_coding	solute carrier family 25, member 39
novel_NIR_2372	chr11	102296635	102297032	-	102296628	102297032	A3SS	ENSMUST00000107098.8	novel	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	7	0	7	0	y	1.00	4	0	4	0	y	1.00	9	0	9	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000018677.10	Slc25a39	chr11	protein_coding	solute carrier family 25, member 39
novel_NIR_2373	chr11	102297480	102297692	-	102297480	102297652	A5SS	ENSMUST00000130436.8	novel	0.05	1	21	1	21	n	0.10	3	27	3	27	n	0.12	8	58	8	58	n	0.00	0	26	0	26	n	0.03	1	34	1	34	n	0.00	0	23	0	23	n	0.07	2	25	2	25	n	0.00	0	35	0	35	n	0.17	3	15	3	15	y	0.00	0	29	0	29	n	0.00	0	28	0	28	n	0.00	0	33	0	33	n	ENSMUSG00000018677.10	Slc25a39	chr11	protein_coding	solute carrier family 25, member 39
novel_NIR_2374	chr11	102297480	102297692	-	102297480	102298064	A5SS	ENSMUST00000154001.8	novel	0.07	1	13	1	13	n	0.33	3	6	3	6	y	0.35	8	15	8	15	y	0.00	0	13	0	13	n	0.04	1	27	1	27	n	0.00	0	9	0	9	n	0.10	2	19	2	19	n	0.00	0	12	0	12	n	0.14	3	18	3	18	n	0.00	0	16	0	16	n	0.00	0	12	0	12	n	0.00	0	13	0	13	n	ENSMUSG00000018677.10	Slc25a39	chr11	protein_coding	solute carrier family 25, member 39
novel_NIR_2375	chr11	102297480	102297692	-	102297480	102298076	A5SS	ENSMUST00000149777.8	novel	0.20	1	4	1	4	n	0.43	3	4	3	4	y	0.53	8	7	8	7	y	0.00	0	3	0	3	n	0.10	1	9	1	9	n	0.00	0	4	0	4	n	0.10	2	18	2	18	n	0.00	0	3	0	3	n	0.60	3	2	3	2	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	ENSMUSG00000018677.10	Slc25a39	chr11	protein_coding	solute carrier family 25, member 39
novel_NIR_2376	chr11	102297480	102297692	-	102297480	102298604	A5SS	ENSMUST00000124755.2	novel	0.04	1	27	1	27	n	0.07	3	39	3	39	n	0.16	8	43	8	43	y	0.00	0	33	0	33	n	0.03	1	37	1	37	n	0.00	0	32	0	32	n	0.04	2	51	2	51	n	0.00	0	29	0	29	n	0.08	3	35	3	35	n	0.00	0	49	0	49	n	0.00	0	49	0	49	n	0.00	0	43	0	43	n	ENSMUSG00000018677.10	Slc25a39	chr11	protein_coding	solute carrier family 25, member 39
novel_NIR_2377	chr11	102297480	102298629	-	102297480	102298064	5pMXE	ENSMUST00000154001.8	novel	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.00	0	27	0	27	n	0.00	0	9	0	9	n	0.05	1	19	1	19	n	0.14	2	12	2	12	n	0.00	0	18	0	18	n	0.16	3	16	3	16	y	0.00	0	12	0	12	n	0.00	0	13	0	13	n	ENSMUSG00000018677.10	Slc25a39	chr11	protein_coding	solute carrier family 25, member 39
novel_NIR_2378	chr11	102297480	102298629	-	102297480	102298076	5pMXE	ENSMUST00000149777.8	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.05	1	18	1	18	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.60	3	2	3	2	y	0.00	0	5	0	5	n	0.00	0	8	0	8	n	ENSMUSG00000018677.10	Slc25a39	chr11	protein_coding	solute carrier family 25, member 39
novel_NIR_2379	chr11	102297480	102304798	-	102297480	102298064	5pMXE	ENSMUST00000154001.8	novel	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.17	3	15	3	15	y	0.00	0	13	0	13	n	0.00	0	27	0	27	n	0.00	0	9	0	9	n	0.00	0	19	0	19	n	0.00	0	12	0	12	n	0.00	0	18	0	18	n	0.00	0	16	0	16	n	0.00	0	12	0	12	n	0.00	0	13	0	13	n	ENSMUSG00000018677.10	Slc25a39	chr11	protein_coding	solute carrier family 25, member 39
novel_NIR_2380	chr11	102297480	102304798	-	102297480	102298076	5pMXE	ENSMUST00000149777.8	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.30	3	7	3	7	y	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	18	0	18	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	ENSMUSG00000018677.10	Slc25a39	chr11	protein_coding	solute carrier family 25, member 39
novel_NIR_2381	chr11	102326317	102326574	+	102326317	102326595	A3SS	ENSMUST00000125819.9	novel	0.00	0	21	0	21	n	0.00	0	32	0	32	n	0.00	0	25	0	25	n	0.00	0	25	0	25	n	0.00	0	42	0	42	n	0.00	0	24	0	24	n	0.20	10	41	10	41	y	0.25	7	21	7	21	y	0.00	0	16	0	16	n	0.00	0	25	0	25	n	0.00	0	19	0	19	n	-	-	-	-	-	-	ENSMUSG00000034708.13	Grn	chr11	protein_coding	granulin
novel_NIR_2382	chr11	102329804	102330258	-	102329735	102330258	A3SS	ENSMUST00000049057.5	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000034685.5	Fam171a2	chr11	protein_coding	family with sequence similarity 171, member A2
novel_NIR_2383	chr11	102346506	102346857	-	102346506	102346725	A5SS&ES	ENSMUST00000103086.4	novel	0.00	0	3	0	3	n	0.28	5	13	5	13	y	0.14	2	12	2	12	n	0.17	2	10	2	10	y	0.23	3	10	3	10	y	0.00	0	2	0	2	n	0.25	2	6	2	6	y	0.00	0	5	0	5	n	0.20	2	8	2	8	y	0.00	0	11	0	11	n	0.22	2	7	2	7	y	0.15	3	17	3	17	y	ENSMUSG00000034664.14	Itga2b	chr11	protein_coding	integrin alpha 2b
novel_NIR_2384	chr11	102388335	102391629	-	102378456	102391629	A3SS	ENSMUST00000143842.2	novel	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.11	2	17	2	17	n	0.00	0	14	0	14	n	0.11	3	24	3	24	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	25	0	25	n	0.29	2	5	2	5	y	0.12	2	14	2	14	n	ENSMUSG00000034621.15	Gpatch8	chr11	protein_coding	G patch domain containing 8
novel_NIR_2385	chr11	102388335	102391629	-	102379622	102391629	A3SS	ENSMUST00000069673.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	2	1	2	1	y	1.00	2	0	2	0	y	ENSMUSG00000034621.15	Gpatch8	chr11	protein_coding	G patch domain containing 8
novel_NIR_2386	chr11	102429182	102430062	-	102429182	102446906	A5SS	ENSMUST00000143842.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.21	3	11	3	11	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000034621.15	Gpatch8	chr11	protein_coding	G patch domain containing 8
novel_NIR_2387	chr11	102662934	102663281	+	102662938	102663281	A5SS	ENSMUST00000103081.10	novel	0.29	5	12	5	12	y	0.00	0	18	0	18	n	0.00	0	2	0	2	n	0.08	1	11	1	11	n	0.33	4	8	4	8	y	0.00	0	1	0	1	n	0.25	3	9	3	9	y	0.00	0	4	0	4	n	0.30	3	7	3	7	y	0.25	4	12	4	12	y	0.22	2	7	2	7	y	0.18	2	9	2	9	y	ENSMUSG00000020926.17	Adam11	chr11	protein_coding	a disintegrin and metallopeptidase domain 11
novel_NIR_2388	chr11	102667729	102668457	+	102667729	102667814	A3SS&ES	ENSMUST00000135513.2	novel	0.16	5	27	5	27	y	0.24	6	19	6	19	y	0.20	1	4	1	4	n	0.06	1	16	1	16	n	0.15	4	22	4	22	y	-	-	-	-	-	-	0.00	0	25	0	25	n	0.22	2	7	2	7	y	0.12	2	15	2	15	n	0.04	1	23	1	23	n	0.10	2	19	2	19	n	0.25	8	24	8	24	y	ENSMUSG00000020926.17	Adam11	chr11	protein_coding	a disintegrin and metallopeptidase domain 11
novel_NIR_2389	chr11	102667729	102668457	+	102667729;102667904	102667814;102668457	ES	ENSMUST00000103081.10	novel	0.18	5	23.0	5	27;19	y	0.19	6	25.5	6	19;32	y	0.17	1	5.0	1	4;6	n	0.06	1	15.5	1	16;15	n	0.15	4	23.5	4	22;25	y	-	-	-	-	-	-	0.00	0	21.5	0	25;18	n	0.27	2	5.5	2	7;4	y	0.12	2	15.0	2	15;15	n	0.05	1	21.0	1	23;19	n	0.11	2	16.5	2	19;14	n	0.26	8	23.0	8	24;22	y	ENSMUSG00000020926.17	Adam11	chr11	protein_coding	a disintegrin and metallopeptidase domain 11
novel_NIR_2390	chr11	102668722	102668957	+	102667904	102668957	A5SS	ENSMUST00000135513.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020926.17	Adam11	chr11	protein_coding	a disintegrin and metallopeptidase domain 11
novel_NIR_2391	chr11	102668722	102668957	+	102668474	102668957	A5SS	ENSMUST00000103081.10	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000020926.17	Adam11	chr11	protein_coding	a disintegrin and metallopeptidase domain 11
novel_NIR_2392	chr11	102891182	102916253	-	102891182	102907876	5pMXE	ENSMUST00000021313.9	novel	0.00	0	15	0	15	n	0.00	0	24	0	24	n	0.00	0	65	0	65	n	0.08	3	36	3	36	n	0.00	0	24	0	24	n	0.00	0	26	0	26	n	0.03	1	28	1	28	n	0.08	2	24	2	24	n	0.00	0	18	0	18	n	0.00	0	23	0	23	n	0.04	1	26	1	26	n	0.16	3	16	3	16	y	ENSMUSG00000020935.9	Dcakd	chr11	protein_coding	dephospho-CoA kinase domain containing
novel_NIR_2393	chr11	102891182;102916283	102916253;102918086	-	102891182	102918086	cassetteExon	ENSMUST00000155490.3	novel	1.00	17.5	0	0;35	0	n	0.78	7.0	2	0;14	2	n	0.68	13.0	6	0;26	6	n	0.85	23.5	4	3;44	4	y	0.86	18.0	3	0;36	3	n	0.83	5.0	1	0;10	1	n	0.87	27.5	4	1;54	4	n	0.88	15.0	2	2;28	2	y	1.00	23.0	0	0;46	0	n	0.89	39.0	5	0;78	5	n	1.00	25.0	0	1;49	0	n	0.93	25.0	2	3;47	2	y	ENSMUSG00000020935.9	Dcakd	chr11	protein_coding	dephospho-CoA kinase domain containing
novel_NIR_2394	chr11	102912909	102918086	-	102891182	102918086	A3SS	ENSMUST00000155490.3	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.14	1	6	1	6	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	ENSMUSG00000020935.9	Dcakd	chr11	protein_coding	dephospho-CoA kinase domain containing
novel_NIR_2395	chr11	102916210	102918086	-	102891182	102918086	A3SS	ENSMUST00000155490.3	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.43	3	4	3	4	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000020935.9	Dcakd	chr11	protein_coding	dephospho-CoA kinase domain containing
novel_NIR_2396	chr11	102916283	102918086	-	102891182	102918086	A3SS	ENSMUST00000155490.3	novel	1.00	35	0	35	0	y	0.88	14	2	14	2	y	0.81	26	6	26	6	y	0.92	44	4	44	4	n	0.92	36	3	36	3	n	0.91	10	1	10	1	y	0.93	54	4	54	4	n	0.93	28	2	28	2	n	1.00	46	0	46	0	y	0.94	78	5	78	5	y	1.00	49	0	49	0	n	0.96	47	2	47	2	n	ENSMUSG00000020935.9	Dcakd	chr11	protein_coding	dephospho-CoA kinase domain containing
novel_NIR_2397	chr11	102968960	102969065	-	102968690	102969065	A3SS	ENSMUST00000128650.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020937.15	Plcd3	chr11	protein_coding	phospholipase C, delta 3
novel_NIR_2398	chr11	102968960	102969065	-	102968788	102969065	A3SS	ENSMUST00000103077.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020937.15	Plcd3	chr11	protein_coding	phospholipase C, delta 3
novel_NIR_2399	chr11	102994470	102994934	+	102994470	102994919	A3SS	ENSMUST00000107040.10	novel	0.00	0	40	0	40	n	0.00	0	48	0	48	n	0.00	0	20	0	20	n	0.03	1	39	1	39	n	0.00	0	53	0	53	n	0.15	2	11	2	11	y	0.00	0	47	0	47	n	0.00	0	19	0	19	n	0.00	0	42	0	42	n	0.00	0	47	0	47	n	0.00	0	30	0	30	n	0.00	0	30	0	30	n	ENSMUSG00000056938.17	Acbd4	chr11	protein_coding	acyl-Coenzyme A binding domain containing 4
novel_NIR_2400	chr11	102997060	103002365	+	102997060	103002108	A3SS&ES	ENSMUST00000161013.2	novel	0.72	13	5	13	5	y	0.50	7	7	7	7	y	1.00	9	0	9	0	y	0.56	5	4	5	4	y	0.67	12	6	12	6	y	0.00	0	5	0	5	n	0.60	6	4	6	4	y	0.88	14	2	14	2	y	0.75	15	5	15	5	y	0.78	18	5	18	5	y	0.69	9	4	9	4	y	0.50	6	6	6	6	y	ENSMUSG00000056938.17	Acbd4	chr11	protein_coding	acyl-Coenzyme A binding domain containing 4
novel_NIR_2401	chr11	103570223	103574260	-	103570223	103577408	A5SS	ENSMUST00000107013.3	novel	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	20	0	20	n	0.00	0	8	0	8	n	0.00	0	16	0	16	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.17	2	10	2	10	y	ENSMUSG00000020946.14	Gosr2	chr11	protein_coding	golgi SNAP receptor complex member 2
novel_NIR_2402	chr11	103580141	103588456	-	103578459	103588456	A3SS	ENSMUST00000145265.2	novel	0.20	2	8	2	8	y	0.00	0	9	0	9	n	0.09	3	29	3	29	n	0.00	0	6	0	6	n	0.18	4	18	4	18	y	0.10	1	9	1	9	n	0.08	1	11	1	11	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.04	1	22	1	22	n	ENSMUSG00000020946.14	Gosr2	chr11	protein_coding	golgi SNAP receptor complex member 2
novel_NIR_2403	chr11	103593789	103613550	+	103593789	103613539	A3SS	ENSMUST00000129780.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000085154.8	C130046K22Rik	chr11	lncRNA	RIKEN cDNA C130046K22 gene
novel_NIR_2404	chr11	104248422	104269511	-	104248422;104259604	104259506;104269511	ES	ENSMUST00000106977.8	novel	0.28	7	18.0	7	24;12	y	0.11	2	16.5	2	21;12	n	0.45	15	18.5	15	26;11	y	0.19	4	17.5	4	18;17	y	0.31	13	29.5	13	33;26	y	0.00	0	15.5	0	16;15	n	0.25	8	24.0	8	22;26	y	0.41	7	10.0	7	10;10	y	0.38	8	13.0	8	13;13	y	0.38	11	18.0	11	21;15	y	0.35	6	11.0	6	12;10	y	0.38	13	21.0	13	28;14	y	ENSMUSG00000018412.17	Kansl1	chr11	protein_coding	KAT8 regulatory NSL complex subunit 1
novel_NIR_2405	chr11	104269652	104283567	-	104269652	104314748	A5SS	ENSMUST00000106977.8	novel	0.00	0	25	0	25	n	0.00	0	20	0	20	n	0.00	0	39	0	39	n	0.00	0	30	0	30	n	0.00	0	42	0	42	n	0.16	3	16	3	16	y	0.03	1	33	1	33	n	0.00	0	29	0	29	n	0.00	0	19	0	19	n	0.00	0	45	0	45	n	0.00	0	20	0	20	n	0.00	0	31	0	31	n	ENSMUSG00000018412.17	Kansl1	chr11	protein_coding	KAT8 regulatory NSL complex subunit 1
novel_NIR_2406	chr11	104316119	104333452	-	104316119	104317250	A5SS&ES	ENSMUST00000134266.2	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.50	2	2	2	2	y	0.60	3	2	3	2	y	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.50	2	2	2	2	y	ENSMUSG00000018412.17	Kansl1	chr11	protein_coding	KAT8 regulatory NSL complex subunit 1
novel_NIR_2407	chr11	104316119	104333452	-	104316119	104332123	5pMXE	ENSMUST00000106971.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000018412.17	Kansl1	chr11	protein_coding	KAT8 regulatory NSL complex subunit 1
novel_NIR_2408	chr11	104316119	104333452	-	104316119	104332551	5pMXE	ENSMUST00000106977.8	novel	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.10	1	9	1	9	n	0.15	2	11	2	11	y	0.25	3	9	3	9	y	0.00	0	9	0	9	n	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.43	3	4	3	4	y	0.00	0	4	0	4	n	0.22	2	7	2	7	y	ENSMUSG00000018412.17	Kansl1	chr11	protein_coding	KAT8 regulatory NSL complex subunit 1
novel_NIR_2409	chr11	104316119	104333452	-	104316119	104358465	A5SS	ENSMUST00000018556.11	novel	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.50	1	1	1	1	n	0.50	2	2	2	2	y	0.50	3	3	3	3	y	-	-	-	-	-	-	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.60	3	2	3	2	y	0.00	0	2	0	2	n	0.33	2	4	2	4	y	ENSMUSG00000018412.17	Kansl1	chr11	protein_coding	KAT8 regulatory NSL complex subunit 1
novel_NIR_2410	chr11	104317294	104332551	-	104316119	104332551	A3SS	ENSMUST00000106977.8	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.10	1	9	1	9	n	0.15	2	11	2	11	y	0.00	0	9	0	9	n	0.10	1	9	1	9	n	0.14	1	6	1	6	n	0.44	4	5	4	5	y	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	ENSMUSG00000018412.17	Kansl1	chr11	protein_coding	KAT8 regulatory NSL complex subunit 1
novel_NIR_2411	chr11	104317294	104332551	-	104317294	104358465	A5SS	ENSMUST00000134266.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.25	1	3	1	3	n	1.00	1	0	1	0	n	0.80	4	1	4	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000018412.17	Kansl1	chr11	protein_coding	KAT8 regulatory NSL complex subunit 1
novel_NIR_2412	chr11	104334417	104358465	-	104316119	104358465	A3SS	ENSMUST00000018556.11	novel	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000018412.17	Kansl1	chr11	protein_coding	KAT8 regulatory NSL complex subunit 1
novel_NIR_2413	chr11	104334417	104358465	-	104317294	104358465	A3SS	ENSMUST00000134266.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000018412.17	Kansl1	chr11	protein_coding	KAT8 regulatory NSL complex subunit 1
novel_NIR_2414	chr11	104336653	104358465	-	104316119	104358465	A3SS	ENSMUST00000018556.11	novel	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.80	4	1	4	1	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	ENSMUSG00000018412.17	Kansl1	chr11	protein_coding	KAT8 regulatory NSL complex subunit 1
novel_NIR_2415	chr11	104336653	104358465	-	104317294	104358465	A3SS	ENSMUST00000134266.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000018412.17	Kansl1	chr11	protein_coding	KAT8 regulatory NSL complex subunit 1
novel_NIR_2416	chr11	104358578	104360244	-	104358578	104359412	5pMXE	ENSMUST00000018556.11	novel	0.00	0	2	0	2	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	ENSMUSG00000018412.17	Kansl1	chr11	protein_coding	KAT8 regulatory NSL complex subunit 1
novel_NIR_2417	chr11	104411659	104412207	-	104411662	104412207	A3SS	ENSMUST00000093923.9	novel	0.60	9	6	9	6	y	0.35	6	11	6	11	y	0.45	10	12	10	12	y	0.19	5	21	5	21	y	0.26	8	23	8	23	y	0.00	0	6	0	6	n	0.32	7	15	7	15	y	0.25	5	15	5	15	y	0.38	5	8	5	8	y	0.46	11	13	11	13	y	0.44	7	9	7	9	y	0.33	7	14	7	14	y	ENSMUSG00000020687.14	Cdc27	chr11	protein_coding	cell division cycle 27
novel_NIR_2418	chr11	104412489	104413549	-	104411662	104413549	A3SS	ENSMUST00000106961.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000020687.14	Cdc27	chr11	protein_coding	cell division cycle 27
novel_NIR_2419	chr11	104417881	104419089	-	104417803	104419089	A3SS	ENSMUST00000093923.9	novel	0.20	2	8	2	8	y	0.00	0	5	0	5	n	0.17	4	20	4	20	y	0.00	0	10	0	10	n	0.00	0	26	0	26	n	0.13	2	13	2	13	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.00	0	15	0	15	n	0.00	0	18	0	18	n	ENSMUSG00000020687.14	Cdc27	chr11	protein_coding	cell division cycle 27
novel_NIR_2420	chr11	104419558	104422556	-	104419558;104420264	104420167;104422556	ES	ENSMUST00000093923.9	novel	0.00	0	11.0	0	12;10	n	0.25	1	3.0	1	1;5	n	0.09	2	19.5	2	17;22	n	0.00	0	17.0	0	16;18	n	0.08	2	24.0	2	17;31	n	0.09	1	10.0	1	9;11	n	0.00	0	18.0	0	14;22	n	0.00	0	13.0	0	13;13	n	0.23	3	10.0	3	10;10	y	0.00	0	12.5	0	12;13	n	0.00	0	9.0	0	11;7	n	0.00	0	11.5	0	10;13	n	ENSMUSG00000020687.14	Cdc27	chr11	protein_coding	cell division cycle 27
novel_NIR_2421	chr11	104534831	104535241	+	104534831	104549549	A3SS	ENSMUST00000021028.5	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	17	0	17	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.29	2	5	2	5	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000020689.5	Itgb3	chr11	protein_coding	integrin beta 3
novel_NIR_2422	chr11	105112179	105137600	+	105112179	105131187	3pMXE	ENSMUST00000123050.2	novel	0.00	0	42	0	42	n	0.12	2	14	2	14	n	0.03	1	30	1	30	n	0.14	2	12	2	12	n	0.18	6	28	6	28	y	0.00	0	34	0	34	n	0.10	3	27	3	27	n	0.15	4	23	4	23	y	0.00	0	12	0	12	n	0.13	4	26	4	26	n	0.00	0	15	0	15	n	0.10	3	26	3	26	n	ENSMUSG00000020694.18	Tlk2	chr11	protein_coding	tousled-like kinase 2 (Arabidopsis)
novel_NIR_2423	chr11	105112179	105137600	+	105112179;105132487	105132395;105137600	ES	ENSMUST00000145048.8	novel	0.00	0	15.0	0	6;24	n	0.17	2	10.0	2	2;18	y	0.05	1	21.0	1	5;37	n	0.19	2	8.5	2	0;17	y	0.33	6	12.0	6	4;20	y	0.00	0	10.5	0	2;19	n	0.15	3	16.5	3	2;31	y	0.23	4	13.5	4	2;25	y	0.00	0	9.0	0	2;16	n	0.16	4	21.0	4	4;38	y	0.00	0	12.0	0	1;23	n	0.12	3	21.5	3	4;39	n	ENSMUSG00000020694.18	Tlk2	chr11	protein_coding	tousled-like kinase 2 (Arabidopsis)
novel_NIR_2424	chr11	105828666	105835084	-	105828666	105830926	A5SS&ES	ENSMUST00000184269.3	novel	0.22	2	7	2	7	y	0.00	0	12	0	12	n	0.09	3	30	3	30	n	0.00	0	13	0	13	n	0.00	0	26	0	26	n	0.00	0	13	0	13	n	0.00	0	15	0	15	n	0.00	0	17	0	17	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	ENSMUSG00000019590.17	Cyb561	chr11	protein_coding	cytochrome b-561
novel_NIR_2425	chr11	105828666	105835084	-	105828666	105843873	A5SS	ENSMUST00000143251.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000019590.17	Cyb561	chr11	protein_coding	cytochrome b-561
novel_NIR_2426	chr11	105828666	105835142	-	105828666	105843873	A5SS	ENSMUST00000143251.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000019590.17	Cyb561	chr11	protein_coding	cytochrome b-561
novel_NIR_2427	chr11	105987710	105987817	+	105975759	105987817	A5SS	ENSMUST00000002044.10	novel	0.00	0	5	0	5	n	0.29	2	5	2	5	y	0.06	1	16	1	16	n	0.00	0	8	0	8	n	0.05	1	21	1	21	n	0.11	1	8	1	8	n	0.08	1	12	1	12	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	ENSMUSG00000020700.12	Map3k3	chr11	protein_coding	mitogen-activated protein kinase kinase kinase 3
novel_NIR_2428	chr11	106008429	106033251	+	106008429;106014732	106014612;106033251	ES	ENSMUST00000002044.10	novel	0.24	4	13.0	4	16;10	y	0.00	0	9.0	0	9;9	n	0.00	0	24.5	0	26;23	n	0.10	2	17.5	2	18;17	n	0.00	0	21.5	0	20;23	n	0.00	0	11.5	0	10;13	n	0.00	0	21.0	0	19;23	n	0.00	0	17.5	0	16;19	n	0.00	0	8.5	0	7;10	n	0.04	1	24.0	1	18;30	n	0.00	0	11.5	0	12;11	n	0.00	0	16.0	0	15;17	n	ENSMUSG00000020700.12	Map3k3	chr11	protein_coding	mitogen-activated protein kinase kinase kinase 3
novel_NIR_2429	chr11	106041244	106042444	+	106041244;106041966	106041835;106042444	ES	ENSMUST00000002044.10	novel	0.00	0	20.0	0	19;21	n	0.15	3	17.5	3	24;11	y	0.05	1	19.5	1	18;21	n	0.00	0	15.0	0	12;18	n	0.06	2	32.5	2	31;34	n	0.06	1	16.5	1	22;11	n	0.00	0	25.0	0	26;24	n	0.00	0	13.5	0	15;12	n	0.00	0	11.5	0	14;9	n	0.00	0	22.5	0	25;20	n	0.06	1	16.5	1	20;13	n	0.00	0	18.5	0	17;20	n	ENSMUSG00000020700.12	Map3k3	chr11	protein_coding	mitogen-activated protein kinase kinase kinase 3
novel_NIR_2430	chr11	106050240	106050877	-	106050240	106051186	A5SS	ENSMUST00000106875.2	novel	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000040699.14	Limd2	chr11	protein_coding	LIM domain containing 2
novel_NIR_2431	chr11	106050268	106051186	-	106050240	106051186	A3SS	ENSMUST00000106875.2	novel	1.00	4	0	4	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000040699.14	Limd2	chr11	protein_coding	LIM domain containing 2
novel_NIR_2432	chr11	106050268	106051186	-	106050268	106050639	5pMXE	ENSMUST00000064545.11	novel	1.00	4	0	4	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000040699.14	Limd2	chr11	protein_coding	LIM domain containing 2
novel_NIR_2433	chr11	106050268	106051186	-	106050268	106050877	5pMXE	ENSMUST00000045923.10	novel	0.16	4	21	4	21	y	0.20	4	16	4	16	y	0.12	1	7	1	7	n	0.00	0	19	0	19	n	0.00	0	21	0	21	n	0.00	0	7	0	7	n	0.04	1	22	1	22	n	0.08	1	11	1	11	n	0.00	0	17	0	17	n	0.14	5	32	5	32	n	0.00	0	29	0	29	n	0.05	1	20	1	20	n	ENSMUSG00000040699.14	Limd2	chr11	protein_coding	LIM domain containing 2
novel_NIR_2434	chr11	106064607	106075388	-	106064607	106077951	A5SS	ENSMUST00000103072.10	novel	0.00	0	1	0	1	n	0.33	1	2	1	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.38	3	5	3	5	y	0.00	0	1	0	1	n	1.00	3	0	3	0	n	1.00	3	0	3	0	y	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	ENSMUSG00000069631.15	Strada	chr11	protein_coding	STE20-related kinase adaptor alpha
novel_NIR_2435	chr11	106064607	106075388	-	106064607;106071809	106071781;106075388	ES	ENSMUST00000122989.2	novel	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	1.00	3	0.0	3	0;0	y	-	-	-	-	-	-	1.00	3	0.0	3	0;0	y	1.00	3	0.0	3	0;0	y	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	ENSMUSG00000069631.15	Strada	chr11	protein_coding	STE20-related kinase adaptor alpha
novel_NIR_2436	chr11	106240617	106245948	-	106240617	106244009	5pMXE	ENSMUST00000174877.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000001027.8	Scn4a	chr11	protein_coding	sodium channel, voltage-gated, type IV, alpha
novel_NIR_2437	chr11	106240617	106256301	-	106240617	106244009	5pMXE	ENSMUST00000174877.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	12	0	12	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000001027.8	Scn4a	chr11	protein_coding	sodium channel, voltage-gated, type IV, alpha
novel_NIR_2438	chr11	106404532	106410760	-	106404532	106410708	A5SS	ENSMUST00000207249.2	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.27	3	8	3	8	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	ENSMUSG00000040548.17	Tex2	chr11	protein_coding	testis expressed gene 2
novel_NIR_2439	chr11	106459453	106470735	-	106459453	106469861	5pMXE	ENSMUST00000103070.3	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.22	2	7	2	7	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040548.17	Tex2	chr11	protein_coding	testis expressed gene 2
novel_NIR_2440	chr11	106459453	106470735	-	106459453	106504041	A5SS	ENSMUST00000128933.2	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	ENSMUSG00000040548.17	Tex2	chr11	protein_coding	testis expressed gene 2
novel_NIR_2441	chr11	106459453	106471251	-	106459453	106469861	5pMXE	ENSMUST00000103070.3	novel	0.40	2	3	2	3	y	1.00	2	0	2	0	y	0.30	3	7	3	7	y	1.00	5	0	5	0	y	0.82	9	2	9	2	y	0.67	6	3	6	3	y	0.56	5	4	5	4	y	0.80	12	3	12	3	y	0.91	10	1	10	1	y	0.67	8	4	8	4	y	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000040548.17	Tex2	chr11	protein_coding	testis expressed gene 2
novel_NIR_2442	chr11	106459453	106471251	-	106459453	106503684	A5SS	ENSMUST00000042780.14	novel	0.04	2	49	2	49	n	0.10	2	19	2	19	n	0.07	3	39	3	39	n	0.07	5	70	5	70	n	0.10	9	79	9	79	n	0.16	6	32	6	32	y	0.07	5	64	5	64	n	0.20	12	48	12	48	y	0.17	10	50	10	50	y	0.10	8	71	8	71	n	0.06	3	49	3	49	n	0.00	0	40	0	40	n	ENSMUSG00000040548.17	Tex2	chr11	protein_coding	testis expressed gene 2
novel_NIR_2443	chr11	106459453	106471251	-	106459453	106504041	A5SS	ENSMUST00000128933.2	novel	0.33	2	4	2	4	y	0.67	2	1	2	1	y	0.75	3	1	3	1	y	0.29	5	12	5	12	y	0.56	9	7	9	7	y	0.55	6	5	6	5	y	0.71	5	2	5	2	y	1.00	12	0	12	0	y	0.77	10	3	10	3	y	0.42	8	11	8	11	y	0.75	3	1	3	1	y	0.00	0	10	0	10	n	ENSMUSG00000040548.17	Tex2	chr11	protein_coding	testis expressed gene 2
novel_NIR_2444	chr11	106459453	106471251	-	106459453;106470003	106469861;106471251	ES	ENSMUST00000153870.2	novel	0.57	2	1.5	2	3;0	y	1.00	2	0.0	2	0;0	y	0.46	3	3.5	3	7;0	y	1.00	5	0.0	5	0;0	y	0.90	9	1.0	9	2;0	y	0.75	6	2.0	6	3;1	y	0.71	5	2.0	5	4;0	y	0.89	12	1.5	12	3;0	y	0.95	10	0.5	10	1;0	y	0.76	8	2.5	8	4;1	y	1.00	3	0.0	3	0;0	y	-	-	-	-	-	-	ENSMUSG00000040548.17	Tex2	chr11	protein_coding	testis expressed gene 2
novel_NIR_2445	chr11	106459453	106471255	-	106459453	106469861	5pMXE	ENSMUST00000103070.3	novel	0.25	1	3	1	3	n	1.00	4	0	4	0	y	0.61	11	7	11	7	y	1.00	9	0	9	0	y	0.78	7	2	7	2	y	0.62	5	3	5	3	y	0.73	11	4	11	4	y	0.73	8	3	8	3	y	0.83	5	1	5	1	y	0.56	5	4	5	4	y	1.00	9	0	9	0	y	1.00	8	0	8	0	y	ENSMUSG00000040548.17	Tex2	chr11	protein_coding	testis expressed gene 2
novel_NIR_2446	chr11	106459453	106471255	-	106459453	106503684	A5SS	ENSMUST00000042780.14	novel	0.02	1	49	1	49	n	0.17	4	19	4	19	y	0.22	11	39	11	39	y	0.11	9	70	9	70	n	0.08	7	79	7	79	n	0.14	5	32	5	32	n	0.15	11	64	11	64	y	0.14	8	48	8	48	n	0.09	5	50	5	50	n	0.07	5	71	5	71	n	0.16	9	49	9	49	y	0.17	8	40	8	40	y	ENSMUSG00000040548.17	Tex2	chr11	protein_coding	testis expressed gene 2
novel_NIR_2447	chr11	106459453	106471255	-	106459453	106504041	A5SS	ENSMUST00000128933.2	novel	0.20	1	4	1	4	n	0.80	4	1	4	1	y	0.92	11	1	11	1	y	0.43	9	12	9	12	y	0.50	7	7	7	7	y	0.50	5	5	5	5	y	0.85	11	2	11	2	y	1.00	8	0	8	0	y	0.62	5	3	5	3	y	0.31	5	11	5	11	y	0.90	9	1	9	1	y	0.44	8	10	8	10	y	ENSMUSG00000040548.17	Tex2	chr11	protein_coding	testis expressed gene 2
novel_NIR_2448	chr11	106459453	106479670	-	106459453	106469861	5pMXE	ENSMUST00000103070.3	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.30	3	7	3	7	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000040548.17	Tex2	chr11	protein_coding	testis expressed gene 2
novel_NIR_2449	chr11	106459453	106479670	-	106459453	106504041	A5SS	ENSMUST00000128933.2	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.75	3	1	3	1	y	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	1	0	1	n	0.09	1	10	1	10	n	ENSMUSG00000040548.17	Tex2	chr11	protein_coding	testis expressed gene 2
novel_NIR_2450	chr11	106459453	106503664	-	106459453	106469861	5pMXE	ENSMUST00000103070.3	novel	0.75	9	3	9	3	y	1.00	3	0	3	0	y	0.30	3	7	3	7	y	1.00	5	0	5	0	y	0.75	6	2	6	2	y	0.25	1	3	1	3	n	0.60	6	4	6	4	y	0.57	4	3	4	3	y	0.75	3	1	3	1	y	0.64	7	4	7	4	y	1.00	9	0	9	0	y	1.00	3	0	3	0	y	ENSMUSG00000040548.17	Tex2	chr11	protein_coding	testis expressed gene 2
novel_NIR_2451	chr11	106459453	106503664	-	106459453	106503684	A5SS	ENSMUST00000042780.14	novel	0.16	9	49	9	49	y	0.14	3	19	3	19	n	0.07	3	39	3	39	n	0.07	5	70	5	70	n	0.07	6	79	6	79	n	0.03	1	32	1	32	n	0.09	6	64	6	64	n	0.08	4	48	4	48	n	0.06	3	50	3	50	n	0.09	7	71	7	71	n	0.16	9	49	9	49	y	0.07	3	40	3	40	n	ENSMUSG00000040548.17	Tex2	chr11	protein_coding	testis expressed gene 2
novel_NIR_2452	chr11	106459453	106503664	-	106459453	106504041	A5SS	ENSMUST00000128933.2	novel	0.69	9	4	9	4	y	0.75	3	1	3	1	y	0.75	3	1	3	1	y	0.29	5	12	5	12	y	0.46	6	7	6	7	y	0.17	1	5	1	5	n	0.75	6	2	6	2	y	1.00	4	0	4	0	y	0.50	3	3	3	3	y	0.39	7	11	7	11	y	0.90	9	1	9	1	y	0.23	3	10	3	10	y	ENSMUSG00000040548.17	Tex2	chr11	protein_coding	testis expressed gene 2
novel_NIR_2453	chr11	106470003	106470735	-	106470003	106471251	A5SS	ENSMUST00000153870.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040548.17	Tex2	chr11	protein_coding	testis expressed gene 2
novel_NIR_2454	chr11	106552850	106570375	-	106545988	106570375	A3SS	ENSMUST00000103069.10	novel	0.07	1	13	1	13	n	0.00	0	6	0	6	n	0.13	4	27	4	27	n	0.00	0	8	0	8	n	0.05	1	21	1	21	n	0.31	4	9	4	9	y	0.00	0	21	0	21	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.09	1	10	1	10	n	0.17	1	5	1	5	n	0.00	0	7	0	7	n	ENSMUSG00000020717.20	Pecam1	chr11	protein_coding	platelet/endothelial cell adhesion molecule 1
novel_NIR_2455	chr11	106552850	106570375	-	106552850;106562624	106562568;106570375	ES	ENSMUST00000183610.8	novel	0.12	1	7.5	1	6;9	n	0.00	0	9.5	0	6;13	n	0.13	4	26.5	4	16;37	n	0.00	0	8.5	0	6;11	n	0.03	1	30.0	1	20;40	n	0.29	4	10.0	4	9;11	y	0.00	0	33.5	0	20;47	n	0.11	1	8.0	1	8;8	n	0.00	0	8.0	0	8;8	n	0.09	1	10.5	1	5;16	n	0.10	1	9.0	1	6;12	n	0.00	0	13.0	0	8;18	n	ENSMUSG00000020717.20	Pecam1	chr11	protein_coding	platelet/endothelial cell adhesion molecule 1
novel_NIR_2456	chr11	106552850	106570375	-	106562624	106570375	A3SS&ES	ENSMUST00000080853.11	novel	0.10	1	9	1	9	n	0.00	0	13	0	13	n	0.10	4	37	4	37	n	0.00	0	11	0	11	n	0.02	1	40	1	40	n	0.27	4	11	4	11	y	0.00	0	47	0	47	n	0.11	1	8	1	8	n	0.00	0	8	0	8	n	0.06	1	16	1	16	n	0.08	1	12	1	12	n	0.00	0	18	0	18	n	ENSMUSG00000020717.20	Pecam1	chr11	protein_coding	platelet/endothelial cell adhesion molecule 1
novel_NIR_2457	chr11	106570437	106573706	-	106570437;106571911	106571858;106573706	ES	ENSMUST00000103069.10	novel	0.00	0	14.0	0	13;15	n	0.10	2	17.5	2	16;19	n	0.18	13	59.0	13	58;60	y	0.44	8	10.0	8	8;12	y	0.19	9	37.5	9	40;35	y	0.03	1	28.0	1	23;33	n	0.18	9	41.5	9	36;47	y	0.00	0	13.0	0	11;15	n	0.43	5	6.5	5	6;7	y	0.20	4	16.5	4	17;16	y	0.08	1	12.0	1	12;12	n	0.08	1	12.0	1	13;11	n	ENSMUSG00000020717.20	Pecam1	chr11	protein_coding	platelet/endothelial cell adhesion molecule 1
novel_NIR_2458	chr11	106601891	106605728	-	106590711	106605728	A3SS	ENSMUST00000103069.10	novel	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	30	0	30	n	0.00	0	4	0	4	n	0.00	0	22	0	22	n	0.00	0	10	0	10	n	0.00	0	35	0	35	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.20	2	8	2	8	y	ENSMUSG00000020717.20	Pecam1	chr11	protein_coding	platelet/endothelial cell adhesion molecule 1
novel_NIR_2459	chr11	106606010	106627173	-	106606010	106640969	A5SS	ENSMUST00000068021.9	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020717.20	Pecam1	chr11	protein_coding	platelet/endothelial cell adhesion molecule 1
novel_NIR_2460	chr11	106668387	106669675	-	106668387	106669543	A5SS	ENSMUST00000127061.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.25	2	6	2	6	y	ENSMUSG00000020718.13	Polg2	chr11	protein_coding	polymerase (DNA directed), gamma 2, accessory subunit
novel_NIR_2461	chr11	106668387	106670210	-	106668387	106669543	A5SS	ENSMUST00000127061.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.18	2	9	2	9	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	ENSMUSG00000020718.13	Polg2	chr11	protein_coding	polymerase (DNA directed), gamma 2, accessory subunit
novel_NIR_2462	chr11	106673519	106674045	-	106673519	106674257	A5SS	ENSMUST00000130172.2	novel	1.00	3	0	3	0	y	0.87	13	2	13	2	n	0.75	3	1	3	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	14	0	14	0	y	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020719.15	Ddx5	chr11	protein_coding	DEAD box helicase 5
novel_NIR_2463	chr11	106673519;106674158	106674045;106674257	-	106673519	106674257	cassetteExon	ENSMUST00000130172.2	novel	1.00	1.5	0	3;0	0	n	0.82	9.0	2	13;5	2	y	0.75	3.0	1	3;3	1	y	1.00	3.0	0	0;6	0	n	1.00	0.5	0	1;0	0	n	1.00	2.5	0	0;5	0	n	1.00	1.5	0	0;3	0	n	1.00	7.0	0	14;0	0	n	1.00	3.5	0	7;0	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020719.15	Ddx5	chr11	protein_coding	DEAD box helicase 5
novel_NIR_2464	chr11	106674158	106674257	-	106673519	106674257	A3SS	ENSMUST00000130172.2	novel	-	-	-	-	-	-	0.71	5	2	5	2	n	0.75	3	1	3	1	n	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020719.15	Ddx5	chr11	protein_coding	DEAD box helicase 5
novel_NIR_2465	chr11	106674178	106674257	-	106673519	106674257	A3SS	ENSMUST00000130172.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000020719.15	Ddx5	chr11	protein_coding	DEAD box helicase 5
novel_NIR_2466	chr11	106674988	106677735	-	106673510	106677735	A3SS	ENSMUST00000127481.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020719.15	Ddx5	chr11	protein_coding	DEAD box helicase 5
novel_NIR_2467	chr11	106677364	106677735	-	106673510	106677735	A3SS	ENSMUST00000127481.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020719.15	Ddx5	chr11	protein_coding	DEAD box helicase 5
novel_NIR_2468	chr11	106679285	106679608	-	106679285	106679525	A5SS	ENSMUST00000123339.2	novel	0.00	0	6	0	6	n	0.40	2	3	2	3	y	0.00	0	6	0	6	n	0.07	1	13	1	13	n	0.12	2	15	2	15	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.13	2	13	2	13	n	0.00	0	6	0	6	n	0.07	1	13	1	13	n	ENSMUSG00000020719.15	Ddx5	chr11	protein_coding	DEAD box helicase 5
novel_NIR_2469	chr11	106679285	106679608	-	106679285	106679842	A5SS	ENSMUST00000129585.8	novel	0.00	0	14	0	14	n	0.67	2	1	2	1	y	0.00	0	17	0	17	n	0.04	1	27	1	27	n	0.07	2	26	2	26	n	0.00	0	10	0	10	n	0.00	0	18	0	18	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.11	2	16	2	16	n	0.00	0	15	0	15	n	0.03	1	28	1	28	n	ENSMUSG00000020719.15	Ddx5	chr11	protein_coding	DEAD box helicase 5
novel_NIR_2470	chr11	106695947	106700018	+	106695947;106697255	106697062;106700018	ES	ENSMUST00000018516.11	novel	0.21	2	7.5	2	10;5	y	0.00	0	5.5	0	3;8	n	0.00	0	8.5	0	7;10	n	0.00	0	6.0	0	4;8	n	0.00	0	7.5	0	4;11	n	0.00	0	5.0	0	4;6	n	0.00	0	7.0	0	7;7	n	0.00	0	9.0	0	10;8	n	0.00	0	4.0	0	4;4	n	0.00	0	10.0	0	12;8	n	0.00	0	5.5	0	9;2	n	0.00	0	10.0	0	7;13	n	ENSMUSG00000018372.14	Cep95	chr11	protein_coding	centrosomal protein 95
novel_NIR_2471	chr11	106704692	106705430	+	106704688	106705430	A5SS	ENSMUST00000103068.10	novel	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.22	2	7	2	7	y	0.50	4	4	4	4	y	0.17	1	5	1	5	n	0.14	1	6	1	6	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.80	4	1	4	1	y	0.00	0	2	0	2	n	ENSMUSG00000018372.14	Cep95	chr11	protein_coding	centrosomal protein 95
novel_NIR_2472	chr11	106766765	106816710	-	106766765	106811007	5pMXE	ENSMUST00000139297.8	novel	0.10	1	9	1	9	n	0.00	0	2	0	2	n	0.06	1	17	1	17	n	0.00	0	10	0	10	n	0.17	3	15	3	15	y	0.10	1	9	1	9	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.12	1	7	1	7	n	0.19	3	13	3	13	y	0.00	0	8	0	8	n	0.00	0	10	0	10	n	ENSMUSG00000018363.17	Smurf2	chr11	protein_coding	SMAD specific E3 ubiquitin protein ligase 2
novel_NIR_2473	chr11	106863441	106863877	-	106863333	106863877	A3SS	ENSMUST00000150366.2	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.42	5	7	5	7	y	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000086481.2	Gm11707	chr11	lncRNA	predicted gene 11707
novel_NIR_2474	chr11	106934548	106937826	-	106934651	106937826	A3SS	ENSMUST00000057892.15	novel	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	25	0	25	n	0.22	2	7	2	7	y	0.08	1	12	1	12	n	ENSMUSG00000040481.18	Bptf	chr11	protein_coding	bromodomain PHD finger transcription factor
novel_NIR_2475	chr11	106934548	106937826	-	106935491	106937826	A3SS&ES	ENSMUST00000208369.2	novel	0.00	0	25	0	25	n	0.00	0	10	0	10	n	0.00	0	31	0	31	n	0.00	0	13	0	13	n	0.00	0	34	0	34	n	0.00	0	11	0	11	n	0.00	0	21	0	21	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.15	2	11	2	11	y	0.03	1	29	1	29	n	ENSMUSG00000040481.18	Bptf	chr11	protein_coding	bromodomain PHD finger transcription factor
novel_NIR_2476	chr11	106944131	106945681	-	106944131	106945282	A5SS	ENSMUST00000057892.15	novel	0.88	14	2	14	2	y	1.00	15	0	15	0	y	0.60	12	8	12	8	y	0.68	13	6	13	6	y	0.70	21	9	21	9	y	0.87	13	2	13	2	y	0.77	24	7	24	7	y	0.73	11	4	11	4	y	1.00	11	0	11	0	y	0.90	26	3	26	3	y	0.71	17	7	17	7	y	1.00	16	0	16	0	y	ENSMUSG00000040481.18	Bptf	chr11	protein_coding	bromodomain PHD finger transcription factor
novel_NIR_2477	chr11	106968624	106969376	-	106968624	106969346	A5SS	ENSMUST00000057892.15	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.40	2	3	2	3	y	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	ENSMUSG00000040481.18	Bptf	chr11	protein_coding	bromodomain PHD finger transcription factor
novel_NIR_2478	chr11	106973526	106985828	-	106973526	106977538	A5SS&ES	ENSMUST00000106762.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	4	0	4	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.40	2	3	2	3	y	1.00	4	0	4	0	y	0.80	4	1	4	1	y	ENSMUSG00000040481.18	Bptf	chr11	protein_coding	bromodomain PHD finger transcription factor
novel_NIR_2479	chr11	106973526	106985828	-	106973526	106986542	A5SS	ENSMUST00000057892.15	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.10	2	18	2	18	n	0.00	0	2	0	2	n	0.36	4	7	4	7	y	0.00	0	6	0	6	n	0.30	3	7	3	7	y	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.18	2	9	2	9	y	0.80	4	1	4	1	y	0.29	4	10	4	10	y	ENSMUSG00000040481.18	Bptf	chr11	protein_coding	bromodomain PHD finger transcription factor
novel_NIR_2480	chr11	106973526	106985828	-	106973526;106977723	106977538;106985828	ES	ENSMUST00000106763.8	novel	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	0.57	2	1.5	2	1;2	y	0.00	0	2.0	0	4;0	n	1.00	4	0.0	4	0;0	y	-	-	-	-	-	-	0.75	3	1.0	3	0;2	y	1.00	1	0.0	1	0;0	n	0.00	0	1.5	0	3;0	n	0.50	2	2.0	2	3;1	y	1.00	4	0.0	4	0;0	y	0.89	4	0.5	4	1;0	y	ENSMUSG00000040481.18	Bptf	chr11	protein_coding	bromodomain PHD finger transcription factor
novel_NIR_2481	chr11	107064240	107064430	-	107064227	107064430	A3SS	ENSMUST00000106757.8	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.25	2	6	2	6	y	0.00	0	5	0	5	n	ENSMUSG00000018433.15	Nol11	chr11	protein_coding	nucleolar protein 11
novel_NIR_2482	chr11	107074456	107077461	-	107074456;107075714	107075566;107077461	ES	ENSMUST00000106757.8	novel	0.15	2	11.0	2	11;11	y	0.00	0	5.5	0	4;7	n	0.00	0	23.5	0	19;28	n	0.09	2	21.0	2	29;13	n	0.00	0	20.0	0	17;23	n	0.08	1	11.5	1	13;10	n	0.00	0	18.5	0	18;19	n	0.00	0	15.5	0	13;18	n	0.20	1	4.0	1	3;5	n	0.05	1	20.0	1	26;14	n	0.00	0	13.0	0	15;11	n	0.06	1	14.5	1	14;15	n	ENSMUSG00000018433.15	Nol11	chr11	protein_coding	nucleolar protein 11
novel_NIR_2483	chr11	107228386	107245516	-	107228386	107238915	5pMXE	ENSMUST00000134763.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040430.19	Pitpnc1	chr11	protein_coding	phosphatidylinositol transfer protein, cytoplasmic 1
novel_NIR_2484	chr11	107986747	108082956	-	107948699	108082956	A3SS	ENSMUST00000059595.11	novel	0.25	2	6	2	6	y	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.10	1	9	1	9	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	ENSMUSG00000050965.15	Prkca	chr11	protein_coding	protein kinase C, alpha
novel_NIR_2485	chr11	109320875	109324716	+	109323793	109324716	5pMXE	ENSMUST00000141739.2	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000020610.18	Amz2	chr11	protein_coding	archaelysin family metallopeptidase 2
novel_NIR_2486	chr11	109331081	109380594	+	109331081	109342588	3pMXE	ENSMUST00000154875.2	novel	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.37	7	12	7	12	y	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.50	2	2	2	2	y	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	ENSMUSG00000020610.18	Amz2	chr11	protein_coding	archaelysin family metallopeptidase 2
novel_NIR_2487	chr11	109331081	109380594	+	109376583	109380594	5pMXE	ENSMUST00000106697.8	novel	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.00	0	47	0	47	n	0.00	0	13	0	13	n	0.15	7	41	7	41	y	0.00	0	33	0	33	n	0.00	0	20	0	20	n	0.05	2	38	2	38	n	0.00	0	17	0	17	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	16	0	16	n	ENSMUSG00000020604.14	Arsg	chr11	protein_coding	arylsulfatase G
novel_NIR_2488	chr11	109342895	109380594	+	109376583	109380594	5pMXE	ENSMUST00000106697.8	novel	0.00	0	14	0	14	n	0.08	1	11	1	11	n	0.00	0	47	0	47	n	0.07	1	13	1	13	n	0.00	0	41	0	41	n	0.00	0	33	0	33	n	0.05	1	20	1	20	n	0.03	1	38	1	38	n	0.00	0	17	0	17	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.16	3	16	3	16	y	ENSMUSG00000020604.14	Arsg	chr11	protein_coding	arylsulfatase G
novel_NIR_2489	chr11	109354374	109357800	-	109354374	109357102	5pMXE	ENSMUST00000032206.9	novel	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.15	2	11	2	11	y	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	7	0	7	n	ENSMUSG00000041920.15	Slc16a6	chr11	protein_coding	solute carrier family 16 (monocarboxylic acid transporters), member 6
novel_NIR_2490	chr11	109354374	109357800	-	109354374	109363350	A5SS	ENSMUST00000168740.3	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.25	2	6	2	6	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000041920.15	Slc16a6	chr11	protein_coding	solute carrier family 16 (monocarboxylic acid transporters), member 6
novel_NIR_2491	chr11	109354374	109357800	-	109354374	109364074	A5SS	ENSMUST00000070152.12	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041920.15	Slc16a6	chr11	protein_coding	solute carrier family 16 (monocarboxylic acid transporters), member 6
novel_NIR_2492	chr11	109363596	109363764	-	109354374	109363764	A3SS	ENSMUST00000070872.13	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.22	4	14	4	14	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.40	4	6	4	6	y	0.11	1	8	1	8	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041920.15	Slc16a6	chr11	protein_coding	solute carrier family 16 (monocarboxylic acid transporters), member 6
novel_NIR_2493	chr11	109363596	109363764	-	109357627	109363764	A3SS	ENSMUST00000129901.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041920.15	Slc16a6	chr11	protein_coding	solute carrier family 16 (monocarboxylic acid transporters), member 6
novel_NIR_2494	chr11	109376583;109379602	109379491;109380594	+	109376583	109380594	cassetteExon	ENSMUST00000152252.8	novel	0.03	0.5	14	1;0	14	n	0.19	2.5	11	0;5	11	n	0.14	7.5	47	2;13	47	n	0.00	0.0	13	0;0	13	n	0.14	6.5	41	1;12	41	n	0.19	7.5	33	9;6	33	y	0.07	1.5	20	2;1	20	n	0.03	1.0	38	2;0	38	n	0.03	0.5	17	1;0	17	n	0.13	2.0	13	0;4	13	n	0.00	0.0	5	0;0	5	n	0.03	0.5	16	1;0	16	n	ENSMUSG00000020604.14	Arsg	chr11	protein_coding	arylsulfatase G
novel_NIR_2495	chr11	109376772	109380594	+	109376583	109380594	A5SS	ENSMUST00000152252.8	novel	0.00	0	14	0	14	n	0.08	1	11	1	11	n	0.00	0	47	0	47	n	0.00	0	13	0	13	n	0.00	0	41	0	41	n	0.03	1	33	1	33	n	0.00	0	20	0	20	n	0.00	0	38	0	38	n	0.00	0	17	0	17	n	0.19	3	13	3	13	y	0.00	0	5	0	5	n	0.00	0	16	0	16	n	ENSMUSG00000020604.14	Arsg	chr11	protein_coding	arylsulfatase G
novel_NIR_2496	chr11	109379602	109380594	+	109376583	109380594	A5SS	ENSMUST00000152252.8	novel	0.00	0	14	0	14	n	0.31	5	11	5	11	n	0.22	13	47	13	47	n	0.00	0	13	0	13	n	0.23	12	41	12	41	n	0.15	6	33	6	33	n	0.05	1	20	1	20	n	0.00	0	38	0	38	n	0.00	0	17	0	17	n	0.24	4	13	4	13	y	0.00	0	5	0	5	n	0.00	0	16	0	16	n	ENSMUSG00000020604.14	Arsg	chr11	protein_coding	arylsulfatase G
novel_NIR_2497	chr11	109381476	109385610	+	109381476	109408068	A3SS	ENSMUST00000020928.13	novel	0.20	5	20	5	20	y	0.00	0	18	0	18	n	0.52	51	48	51	48	y	0.29	6	15	6	15	y	0.36	20	35	20	35	y	0.45	30	36	30	36	y	0.30	8	19	8	19	y	0.38	24	39	24	39	y	0.44	4	5	4	5	y	0.30	7	16	7	16	y	0.53	10	9	10	9	y	0.20	8	33	8	33	y	ENSMUSG00000020604.14	Arsg	chr11	protein_coding	arylsulfatase G
novel_NIR_2498	chr11	109542269	109544605	+	109540353	109544605	A5SS	ENSMUST00000123354.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020612.17	Prkar1a	chr11	protein_coding	protein kinase, cAMP dependent regulatory, type I, alpha
novel_NIR_2499	chr11	109542269	109544605	+	109541450	109544605	A5SS	ENSMUST00000106677.8	novel	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	24	0	24	n	0.27	3	8	3	8	y	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000020612.17	Prkar1a	chr11	protein_coding	protein kinase, cAMP dependent regulatory, type I, alpha
novel_NIR_2500	chr11	109542423	109544605	+	109540353	109544605	A5SS	ENSMUST00000123354.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020612.17	Prkar1a	chr11	protein_coding	protein kinase, cAMP dependent regulatory, type I, alpha
novel_NIR_2501	chr11	109542423	109544605	+	109541450	109544605	A5SS	ENSMUST00000106677.8	novel	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	24	0	24	n	0.00	0	8	0	8	n	0.09	1	10	1	10	n	0.27	3	8	3	8	y	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.50	1	1	1	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000020612.17	Prkar1a	chr11	protein_coding	protein kinase, cAMP dependent regulatory, type I, alpha
novel_NIR_2502	chr11	109844457	109847889	-	109844457;109846027	109845861;109847889	ES	ENSMUST00000020948.15	novel	0.00	0	18.5	0	21;16	n	0.07	1	12.5	1	14;11	n	0.03	1	32.5	1	32;33	n	0.00	0	30.5	0	31;30	n	0.04	2	48.0	2	48;48	n	0.11	2	17.0	2	12;22	n	0.20	6	23.5	6	18;29	y	0.13	3	19.5	3	19;20	n	0.04	1	27.5	1	28;27	n	0.07	3	42.5	3	45;40	n	0.06	1	16.0	1	18;14	n	0.04	2	54.5	2	57;52	n	ENSMUSG00000020620.15	Abca8b	chr11	protein_coding	ATP-binding cassette, sub-family A (ABC1), member 8b
novel_NIR_2503	chr11	109872605;109873094	109872993;109886438	-	109872605	109886438	cassetteExon	ENSMUST00000020948.15	novel	0.17	2.0	10	1;3	10	n	0.27	1.5	4	2;1	4	n	0.48	12.0	13	14;10	13	y	0.51	15.5	15	15;16	15	y	0.54	19.0	16	17;21	16	y	0.40	2.0	3	2;2	3	y	0.49	15.5	16	16;15	16	y	0.38	7.5	12	7;8	12	y	0.47	11.5	13	11;12	13	y	0.47	18.5	21	18;19	21	y	0.29	2.5	6	0;5	6	n	0.44	12.5	16	12;13	16	y	ENSMUSG00000020620.15	Abca8b	chr11	protein_coding	ATP-binding cassette, sub-family A (ABC1), member 8b
novel_NIR_2504	chr11	109873094	109886438	-	109872605	109886438	A3SS	ENSMUST00000020948.15	novel	0.23	3	10	3	10	n	0.20	1	4	1	4	n	0.43	10	13	10	13	n	0.52	16	15	16	15	n	0.57	21	16	21	16	n	0.40	2	3	2	3	n	0.48	15	16	15	16	n	0.40	8	12	8	12	n	0.48	12	13	12	13	n	0.47	19	21	19	21	n	0.45	5	6	5	6	y	0.45	13	16	13	16	n	ENSMUSG00000020620.15	Abca8b	chr11	protein_coding	ATP-binding cassette, sub-family A (ABC1), member 8b
novel_NIR_2505	chr11	109980879	109982345	-	109980775	109982345	A3SS	ENSMUST00000106662.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041828.16	Abca8a	chr11	protein_coding	ATP-binding cassette, sub-family A (ABC1), member 8a
novel_NIR_2506	chr11	109982446	109985057	-	109982446	109986689	A5SS	ENSMUST00000046223.14	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.12	2	14	2	14	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.19	3	13	3	13	y	0.00	0	1	0	1	n	0.08	1	12	1	12	n	0.12	3	23	3	23	n	0.00	0	13	0	13	n	0.14	4	25	4	25	n	ENSMUSG00000041828.16	Abca8a	chr11	protein_coding	ATP-binding cassette, sub-family A (ABC1), member 8a
novel_NIR_2507	chr11	109982446	109985057	-	109982446	109986730	A5SS	ENSMUST00000100287.9	novel	0.00	0	8	0	8	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.22	2	7	2	7	y	0.00	0	8	0	8	n	-	-	-	-	-	-	0.27	3	8	3	8	n	0.00	0	1	0	1	n	0.10	1	9	1	9	n	0.23	3	10	3	10	y	0.00	0	6	0	6	n	0.18	4	18	4	18	y	ENSMUSG00000041828.16	Abca8a	chr11	protein_coding	ATP-binding cassette, sub-family A (ABC1), member 8a
novel_NIR_2508	chr11	109982446	109988185	-	109982446	109986689	5pMXE	ENSMUST00000046223.14	novel	0.00	0	3	0	3	n	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.42	10	14	10	14	y	0.84	16	3	16	3	y	-	-	-	-	-	-	0.19	3	13	3	13	y	0.75	3	1	3	1	y	0.00	0	12	0	12	n	0.34	12	23	12	23	y	0.24	4	13	4	13	y	0.38	15	25	15	25	y	ENSMUSG00000041828.16	Abca8a	chr11	protein_coding	ATP-binding cassette, sub-family A (ABC1), member 8a
novel_NIR_2509	chr11	109982446	109988185	-	109982446	109986730	5pMXE	ENSMUST00000100287.9	novel	0.00	0	8	0	8	n	0.25	3	9	3	9	y	-	-	-	-	-	-	0.59	10	7	10	7	y	0.67	16	8	16	8	y	-	-	-	-	-	-	0.27	3	8	3	8	y	0.75	3	1	3	1	y	0.00	0	9	0	9	n	0.55	12	10	12	10	y	0.40	4	6	4	6	y	0.45	15	18	15	18	y	ENSMUSG00000041828.16	Abca8a	chr11	protein_coding	ATP-binding cassette, sub-family A (ABC1), member 8a
novel_NIR_2510	chr11	110218719	110219963	-	110218762	110219963	A3SS	ENSMUST00000043961.12	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000018800.15	Abca5	chr11	protein_coding	ATP-binding cassette, sub-family A (ABC1), member 5
novel_NIR_2511	chr11	110290251	110330275	+	110290251	110373365	A3SS	ENSMUST00000020949.12	novel	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000020623.12	Map2k6	chr11	protein_coding	mitogen-activated protein kinase kinase 6
novel_NIR_2512	chr11	110386884	110387165	+	110385172	110387165	A5SS	ENSMUST00000020949.12	novel	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.40	2	3	2	3	y	0.00	0	17	0	17	n	0.08	1	12	1	12	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.10	1	9	1	9	n	0.18	2	9	2	9	y	0.00	0	12	0	12	n	0.00	0	4	0	4	n	ENSMUSG00000020623.12	Map2k6	chr11	protein_coding	mitogen-activated protein kinase kinase 6
novel_NIR_2513	chr11	112935986	113092117	-	112935986	112958168	A5SS&ES	ENSMUST00000127263.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000087259.8	2610035D17Rik	chr11	lncRNA	RIKEN cDNA 2610035D17 gene
novel_NIR_2514	chr11	112947184	112958168	-	112935986	112958168	A3SS	ENSMUST00000136438.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	3	3	3	3	y	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000087259.8	2610035D17Rik	chr11	lncRNA	RIKEN cDNA 2610035D17 gene
novel_NIR_2515	chr11	112958212	113020987	-	112958212	112963594	A5SS&ES	ENSMUST00000150712.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000087259.8	2610035D17Rik	chr11	lncRNA	RIKEN cDNA 2610035D17 gene
novel_NIR_2516	chr11	112958212	113020987	-	112958212	113063779	A5SS	ENSMUST00000136438.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.22	2	7	2	7	y	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.50	4	4	4	4	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000087259.8	2610035D17Rik	chr11	lncRNA	RIKEN cDNA 2610035D17 gene
novel_NIR_2517	chr11	112958212	113020987	-	112958212	113092115	A5SS	ENSMUST00000127263.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000087259.8	2610035D17Rik	chr11	lncRNA	RIKEN cDNA 2610035D17 gene
novel_NIR_2518	chr11	112958212	113063593	-	112958212	112963594	A5SS&ES	ENSMUST00000150712.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000087259.8	2610035D17Rik	chr11	lncRNA	RIKEN cDNA 2610035D17 gene
novel_NIR_2519	chr11	112958212	113063593	-	112958212	113063779	A5SS	ENSMUST00000136438.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.12	1	7	1	7	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	1.00	2	0	2	0	y	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000087259.8	2610035D17Rik	chr11	lncRNA	RIKEN cDNA 2610035D17 gene
novel_NIR_2520	chr11	112958212	113063593	-	112958212	113092115	A5SS	ENSMUST00000127263.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000087259.8	2610035D17Rik	chr11	lncRNA	RIKEN cDNA 2610035D17 gene
novel_NIR_2521	chr11	113061538	113063779	-	112958212	113063779	A3SS	ENSMUST00000136438.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.30	3	7	3	7	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.50	1	1	1	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000087259.8	2610035D17Rik	chr11	lncRNA	RIKEN cDNA 2610035D17 gene
novel_NIR_2522	chr11	113061538	113063779	-	112963726	113063779	A3SS	ENSMUST00000150712.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000087259.8	2610035D17Rik	chr11	lncRNA	RIKEN cDNA 2610035D17 gene
novel_NIR_2523	chr11	113097159	113099812	-	113097326	113099812	A3SS&ES	ENSMUST00000130373.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000085421.2	4732490B19Rik	chr11	lncRNA	RIKEN cDNA 4732490B19 gene
novel_NIR_2524	chr11	113354921	113414220	-	113354921	113413727	A5SS&ES	ENSMUST00000042657.16	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000041654.16	Slc39a11	chr11	protein_coding	solute carrier family 39 (metal ion transporter), member 11
novel_NIR_2525	chr11	113452947	113456412	-	113452950	113456412	A3SS	ENSMUST00000149034.8	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.57	4	3	4	3	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000041654.16	Slc39a11	chr11	protein_coding	solute carrier family 39 (metal ion transporter), member 11
novel_NIR_2526	chr11	113452947	113456502	-	113452950	113456502	A3SS	ENSMUST00000071539.10	novel	0.27	9	24	9	24	y	0.27	6	16	6	16	y	0.44	38	48	38	48	y	0.49	17	18	17	18	y	0.36	24	43	24	43	y	0.33	19	39	19	39	y	0.33	23	46	23	46	y	0.30	15	35	15	35	y	0.44	18	23	18	23	y	0.37	11	19	11	19	y	0.33	11	22	11	22	y	0.43	24	32	24	32	y	ENSMUSG00000041654.16	Slc39a11	chr11	protein_coding	solute carrier family 39 (metal ion transporter), member 11
novel_NIR_2527	chr11	113452947	113482608	-	113452950	113482608	A3SS	ENSMUST00000146031.8	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	0.50	3	3	3	3	y	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	ENSMUSG00000041654.16	Slc39a11	chr11	protein_coding	solute carrier family 39 (metal ion transporter), member 11
novel_NIR_2528	chr11	113452947	113482608	-	113468539	113482608	3pMXE	ENSMUST00000123153.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041654.16	Slc39a11	chr11	protein_coding	solute carrier family 39 (metal ion transporter), member 11
novel_NIR_2529	chr11	113452947	113540768	-	113452950	113540768	A3SS	ENSMUST00000125890.8	novel	0.50	2	2	2	2	y	0.00	0	7	0	7	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.75	3	1	3	1	y	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000041654.16	Slc39a11	chr11	protein_coding	solute carrier family 39 (metal ion transporter), member 11
novel_NIR_2530	chr11	113452947	113540768	-	113482758	113540768	A3SS&ES	ENSMUST00000146031.8	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.60	3	2	3	2	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041654.16	Slc39a11	chr11	protein_coding	solute carrier family 39 (metal ion transporter), member 11
novel_NIR_2531	chr11	113452947	113540768	-	113504305	113540768	A3SS&ES	ENSMUST00000136392.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000041654.16	Slc39a11	chr11	protein_coding	solute carrier family 39 (metal ion transporter), member 11
novel_NIR_2532	chr11	113452950	113507623	-	113452950	113456412	5pMXE	ENSMUST00000149034.8	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041654.16	Slc39a11	chr11	protein_coding	solute carrier family 39 (metal ion transporter), member 11
novel_NIR_2533	chr11	113452950	113507623	-	113452950	113482608	A5SS&ES	ENSMUST00000146031.8	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.40	2	3	2	3	y	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	10	0	10	n	ENSMUSG00000041654.16	Slc39a11	chr11	protein_coding	solute carrier family 39 (metal ion transporter), member 11
novel_NIR_2534	chr11	113452950	113507623	-	113452950	113504210	A5SS&ES	ENSMUST00000136392.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000041654.16	Slc39a11	chr11	protein_coding	solute carrier family 39 (metal ion transporter), member 11
novel_NIR_2535	chr11	113452950	113507623	-	113452950	113540768	A5SS	ENSMUST00000125890.8	novel	0.00	0	2	0	2	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000041654.16	Slc39a11	chr11	protein_coding	solute carrier family 39 (metal ion transporter), member 11
novel_NIR_2536	chr11	113482758	113507623	-	113482758	113540768	A5SS	ENSMUST00000146031.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041654.16	Slc39a11	chr11	protein_coding	solute carrier family 39 (metal ion transporter), member 11
novel_NIR_2537	chr11	113504305	113507623	-	113504305	113540768	A5SS	ENSMUST00000136392.8	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.75	3	1	3	1	y	ENSMUSG00000041654.16	Slc39a11	chr11	protein_coding	solute carrier family 39 (metal ion transporter), member 11
novel_NIR_2538	chr11	113539642	113540768	-	113452950	113540768	A3SS	ENSMUST00000125890.8	novel	0.33	1	2	1	2	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	ENSMUSG00000041654.16	Slc39a11	chr11	protein_coding	solute carrier family 39 (metal ion transporter), member 11
novel_NIR_2539	chr11	113539642	113540768	-	113482758	113540768	A3SS	ENSMUST00000146031.8	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000041654.16	Slc39a11	chr11	protein_coding	solute carrier family 39 (metal ion transporter), member 11
novel_NIR_2540	chr11	113539642	113540768	-	113504305	113540768	A3SS	ENSMUST00000136392.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	ENSMUSG00000041654.16	Slc39a11	chr11	protein_coding	solute carrier family 39 (metal ion transporter), member 11
novel_NIR_2541	chr11	113583328	113590032	+	113583328	113585338	3pMXE	ENSMUST00000042227.15	novel	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	20	0	20	n	0.12	1	7	1	7	n	0.14	2	12	2	12	n	0.00	0	1	0	1	n	0.08	1	11	1	11	n	0.09	1	10	1	10	n	0.08	1	12	1	12	n	0.20	2	8	2	8	y	ENSMUSG00000041623.18	D11Wsu47e	chr11	protein_coding	DNA segment, Chr 11, Wayne State University 47, expressed
novel_NIR_2542	chr11	113590739	113593239	-	113590739;113592921	113592882;113593239	ES	ENSMUST00000106617.8	novel	0.20	2	8.0	2	3;13	y	0.00	0	6.5	0	3;10	n	0.00	0	2.5	0	0;5	n	0.23	3	10.0	3	1;19	y	0.19	2	8.5	2	4;13	y	0.00	0	3.5	0	1;6	n	0.25	2	6.0	2	2;10	y	0.25	1	3.0	1	0;6	n	0.18	1	4.5	1	0;9	n	0.11	2	15.5	2	5;26	n	0.00	0	12.5	0	8;17	n	0.00	0	5.5	0	2;9	n	ENSMUSG00000018727.20	Cpsf4l	chr11	protein_coding	cleavage and polyadenylation specific factor 4-like
novel_NIR_2543	chr11	113590739	113593239	-	113590808	113593239	A3SS	ENSMUST00000018871.8	novel	0.29	2	5	2	5	y	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.27	3	8	3	8	y	0.29	2	5	2	5	y	-	-	-	-	-	-	0.29	2	5	2	5	y	0.50	1	1	1	1	n	0.33	1	2	1	2	n	0.25	2	6	2	6	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000018727.20	Cpsf4l	chr11	protein_coding	cleavage and polyadenylation specific factor 4-like
novel_NIR_2544	chr11	113590739	113593239	-	113592921	113593239	A3SS&ES	ENSMUST00000173655.8	novel	0.13	2	13	2	13	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.14	3	19	3	19	n	0.13	2	13	2	13	n	0.00	0	6	0	6	n	0.17	2	10	2	10	y	0.14	1	6	1	6	n	0.10	1	9	1	9	n	0.07	2	26	2	26	n	0.00	0	17	0	17	n	0.00	0	9	0	9	n	ENSMUSG00000018727.20	Cpsf4l	chr11	protein_coding	cleavage and polyadenylation specific factor 4-like
novel_NIR_2545	chr11	113594192	113599630	-	113594192;113597395	113597243;113599630	ES	ENSMUST00000106617.8	novel	0.00	0	12.5	0	16;9	n	0.00	0	15.5	0	19;12	n	0.00	0	6.0	0	7;5	n	0.08	3	36.0	3	45;27	n	0.04	1	22.5	1	25;20	n	0.00	0	7.5	0	4;11	n	0.04	1	22.5	1	25;20	n	0.08	1	12.0	1	14;10	n	0.00	0	15.0	0	20;10	n	0.15	4	23.5	4	31;16	y	0.00	0	18.5	0	22;15	n	0.00	0	14.0	0	15;13	n	ENSMUSG00000018727.20	Cpsf4l	chr11	protein_coding	cleavage and polyadenylation specific factor 4-like
novel_NIR_2546	chr11	113620491	113621097	-	113620491	113630105	A5SS	ENSMUST00000131488.2	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.43	3	4	3	4	y	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	ENSMUSG00000041598.8	Cdc42ep4	chr11	protein_coding	CDC42 effector protein (Rho GTPase binding) 4
novel_NIR_2547	chr11	113620491	113621097	-	113620491	113641780	A5SS	ENSMUST00000153453.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000041598.8	Cdc42ep4	chr11	protein_coding	CDC42 effector protein (Rho GTPase binding) 4
novel_NIR_2548	chr11	113620491	113624817	-	113620491	113630105	A5SS	ENSMUST00000131488.2	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.43	3	4	3	4	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	ENSMUSG00000041598.8	Cdc42ep4	chr11	protein_coding	CDC42 effector protein (Rho GTPase binding) 4
novel_NIR_2549	chr11	113620491	113624817	-	113620491	113641780	A5SS	ENSMUST00000153453.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000041598.8	Cdc42ep4	chr11	protein_coding	CDC42 effector protein (Rho GTPase binding) 4
novel_NIR_2550	chr11	113620491	113628094	-	113620491	113630105	A5SS	ENSMUST00000131488.2	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.20	1	4	1	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.40	2	3	2	3	y	0.00	0	9	0	9	n	0.33	3	6	3	6	y	0.00	0	3	0	3	n	ENSMUSG00000041598.8	Cdc42ep4	chr11	protein_coding	CDC42 effector protein (Rho GTPase binding) 4
novel_NIR_2551	chr11	113620491	113628094	-	113620491	113641780	A5SS	ENSMUST00000153453.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	1.00	3	0	3	0	y	0.00	0	2	0	2	n	ENSMUSG00000041598.8	Cdc42ep4	chr11	protein_coding	CDC42 effector protein (Rho GTPase binding) 4
novel_NIR_2552	chr11	113620491	113628094	-	113620491	113642514	A5SS	ENSMUST00000053536.5	novel	0.00	0	29	0	29	n	0.00	0	17	0	17	n	0.00	0	21	0	21	n	0.04	1	26	1	26	n	0.02	1	52	1	52	n	0.00	0	16	0	16	n	0.00	0	27	0	27	n	0.06	1	15	1	15	n	0.17	2	10	2	10	y	0.00	0	43	0	43	n	0.11	3	24	3	24	n	0.00	0	35	0	35	n	ENSMUSG00000041598.8	Cdc42ep4	chr11	protein_coding	CDC42 effector protein (Rho GTPase binding) 4
novel_NIR_2553	chr11	113620491	113640482	-	113620491	113630105	5pMXE	ENSMUST00000131488.2	novel	0.00	0	4	0	4	n	0.75	3	1	3	1	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.50	4	4	4	4	y	1.00	4	0	4	0	y	0.00	0	3	0	3	n	0.67	2	1	2	1	y	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	ENSMUSG00000041598.8	Cdc42ep4	chr11	protein_coding	CDC42 effector protein (Rho GTPase binding) 4
novel_NIR_2554	chr11	113620491	113640482	-	113620491	113641556	A5SS	ENSMUST00000106616.2	novel	0.00	0	12	0	12	n	0.18	3	14	3	14	y	0.00	0	35	0	35	n	0.00	0	25	0	25	n	0.15	4	23	4	23	y	0.19	4	17	4	17	y	0.00	0	28	0	28	n	0.09	2	21	2	21	n	0.00	0	14	0	14	n	0.00	0	37	0	37	n	0.00	0	21	0	21	n	0.00	0	23	0	23	n	ENSMUSG00000041598.8	Cdc42ep4	chr11	protein_coding	CDC42 effector protein (Rho GTPase binding) 4
novel_NIR_2555	chr11	113620491	113640482	-	113620491	113641780	A5SS	ENSMUST00000153453.2	novel	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000041598.8	Cdc42ep4	chr11	protein_coding	CDC42 effector protein (Rho GTPase binding) 4
novel_NIR_2556	chr11	113620491	113640482	-	113620491	113642514	A5SS	ENSMUST00000053536.5	novel	0.00	0	29	0	29	n	0.15	3	17	3	17	y	0.00	0	21	0	21	n	0.00	0	26	0	26	n	0.07	4	52	4	52	n	0.20	4	16	4	16	y	0.00	0	27	0	27	n	0.12	2	15	2	15	n	0.00	0	10	0	10	n	0.00	0	43	0	43	n	0.00	0	24	0	24	n	0.00	0	35	0	35	n	ENSMUSG00000041598.8	Cdc42ep4	chr11	protein_coding	CDC42 effector protein (Rho GTPase binding) 4
novel_NIR_2557	chr11	113620491	113642434	-	113620491	113630105	5pMXE	ENSMUST00000131488.2	novel	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	1.00	1	0	1	0	n	0.40	2	3	2	3	y	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.25	2	6	2	6	y	0.25	1	3	1	3	n	ENSMUSG00000041598.8	Cdc42ep4	chr11	protein_coding	CDC42 effector protein (Rho GTPase binding) 4
novel_NIR_2558	chr11	113620491	113642434	-	113620491	113641780	5pMXE	ENSMUST00000153453.2	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.33	1	2	1	2	n	ENSMUSG00000041598.8	Cdc42ep4	chr11	protein_coding	CDC42 effector protein (Rho GTPase binding) 4
novel_NIR_2559	chr11	113630341	113641556	-	113620491	113641556	A3SS	ENSMUST00000106616.2	novel	0.20	3	12	3	12	y	0.00	0	14	0	14	n	0.00	0	35	0	35	n	0.11	3	25	3	25	n	0.00	0	23	0	23	n	0.00	0	17	0	17	n	0.00	0	28	0	28	n	0.09	2	21	2	21	n	0.12	2	14	2	14	n	0.07	3	37	3	37	n	0.09	2	21	2	21	n	0.00	0	23	0	23	n	ENSMUSG00000041598.8	Cdc42ep4	chr11	protein_coding	CDC42 effector protein (Rho GTPase binding) 4
novel_NIR_2560	chr11	114742579	114754293	+	114742069	114754293	A5SS	ENSMUST00000133245.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.33	2	4	2	4	y	0.33	1	2	1	2	n	0.86	6	1	6	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000051043.17	Gprc5c	chr11	protein_coding	G protein-coupled receptor, family C, group 5, member C
novel_NIR_2561	chr11	114742579	114754293	+	114742399	114754293	A5SS	ENSMUST00000177952.8	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	6	0	6	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000051043.17	Gprc5c	chr11	protein_coding	G protein-coupled receptor, family C, group 5, member C
novel_NIR_2562	chr11	114742579	114754293	+	114742712	114754293	A5SS	ENSMUST00000122967.3	novel	0.00	0	28	0	28	n	0.27	3	8	3	8	y	0.00	0	20	0	20	n	0.02	1	53	1	53	n	0.04	2	49	2	49	n	0.06	1	15	1	15	n	0.19	6	25	6	25	y	0.00	0	23	0	23	n	0.00	0	27	0	27	n	0.00	0	34	0	34	n	0.00	0	21	0	21	n	0.00	0	43	0	43	n	ENSMUSG00000051043.17	Gprc5c	chr11	protein_coding	G protein-coupled receptor, family C, group 5, member C
novel_NIR_2563	chr11	114742579	114754293	+	114742812	114754293	5pMXE	ENSMUST00000136785.2	novel	0.00	0	15	0	15	n	0.23	3	10	3	10	y	0.00	0	11	0	11	n	0.04	1	22	1	22	n	0.06	2	29	2	29	n	0.08	1	11	1	11	n	0.27	6	16	6	16	y	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.00	0	29	0	29	n	ENSMUSG00000051043.17	Gprc5c	chr11	protein_coding	G protein-coupled receptor, family C, group 5, member C
novel_NIR_2564	chr11	114742579	114754293	+	114743099	114754293	5pMXE	ENSMUST00000021071.14	novel	0.00	0	7	0	7	n	0.20	3	12	3	12	y	0.00	0	11	0	11	n	0.07	1	13	1	13	n	0.12	2	14	2	14	n	0.11	1	8	1	8	n	0.23	6	20	6	20	y	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	20	0	20	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	ENSMUSG00000051043.17	Gprc5c	chr11	protein_coding	G protein-coupled receptor, family C, group 5, member C
novel_NIR_2565	chr11	114742579	114754293	+	114743194	114754293	5pMXE	ENSMUST00000142262.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000051043.17	Gprc5c	chr11	protein_coding	G protein-coupled receptor, family C, group 5, member C
novel_NIR_2566	chr11	114749915	114754293	+	114742069	114754293	A5SS	ENSMUST00000133245.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	2	4	2	4	y	0.60	3	2	3	2	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000051043.17	Gprc5c	chr11	protein_coding	G protein-coupled receptor, family C, group 5, member C
novel_NIR_2567	chr11	114749915	114754293	+	114742399	114754293	A5SS	ENSMUST00000177952.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000051043.17	Gprc5c	chr11	protein_coding	G protein-coupled receptor, family C, group 5, member C
novel_NIR_2568	chr11	114749915	114754293	+	114742712	114754293	A5SS	ENSMUST00000122967.3	novel	0.00	0	28	0	28	n	0.11	1	8	1	8	n	0.00	0	20	0	20	n	0.00	0	53	0	53	n	0.04	2	49	2	49	n	0.17	3	15	3	15	y	0.00	0	25	0	25	n	0.00	0	23	0	23	n	0.00	0	27	0	27	n	0.00	0	34	0	34	n	0.00	0	21	0	21	n	0.00	0	43	0	43	n	ENSMUSG00000051043.17	Gprc5c	chr11	protein_coding	G protein-coupled receptor, family C, group 5, member C
novel_NIR_2569	chr11	114749915	114754293	+	114742812	114754293	A5SS	ENSMUST00000136785.2	novel	0.00	0	15	0	15	n	0.09	1	10	1	10	n	0.00	0	11	0	11	n	0.00	0	22	0	22	n	0.06	2	29	2	29	n	0.21	3	11	3	11	y	0.00	0	16	0	16	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.00	0	29	0	29	n	ENSMUSG00000051043.17	Gprc5c	chr11	protein_coding	G protein-coupled receptor, family C, group 5, member C
novel_NIR_2570	chr11	114749915	114754293	+	114743099	114754293	A5SS	ENSMUST00000021071.14	novel	0.00	0	7	0	7	n	0.08	1	12	1	12	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.12	2	14	2	14	n	0.27	3	8	3	8	y	0.00	0	20	0	20	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	20	0	20	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	ENSMUSG00000051043.17	Gprc5c	chr11	protein_coding	G protein-coupled receptor, family C, group 5, member C
novel_NIR_2571	chr11	114749915	114754293	+	114743194	114754293	A5SS	ENSMUST00000142262.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000051043.17	Gprc5c	chr11	protein_coding	G protein-coupled receptor, family C, group 5, member C
novel_NIR_2572	chr11	114749932	114754293	+	114742069	114754293	A5SS	ENSMUST00000133245.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000051043.17	Gprc5c	chr11	protein_coding	G protein-coupled receptor, family C, group 5, member C
novel_NIR_2573	chr11	114749932	114754293	+	114742399	114754293	A5SS	ENSMUST00000177952.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	ENSMUSG00000051043.17	Gprc5c	chr11	protein_coding	G protein-coupled receptor, family C, group 5, member C
novel_NIR_2574	chr11	114749932	114754293	+	114742812	114754293	A5SS	ENSMUST00000136785.2	novel	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.15	2	11	2	11	y	0.00	0	22	0	22	n	0.00	0	29	0	29	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.00	0	18	0	18	n	0.07	1	13	1	13	n	0.00	0	29	0	29	n	ENSMUSG00000051043.17	Gprc5c	chr11	protein_coding	G protein-coupled receptor, family C, group 5, member C
novel_NIR_2575	chr11	114749932	114754293	+	114743194	114754293	A5SS	ENSMUST00000142262.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000051043.17	Gprc5c	chr11	protein_coding	G protein-coupled receptor, family C, group 5, member C
novel_NIR_2576	chr11	115167008	115167996	-	115167008	115167635	5pMXE	ENSMUST00000021078.3	novel	0.38	10	16	10	16	y	0.05	1	21	1	21	n	0.07	1	13	1	13	n	0.16	5	26	5	26	y	0.15	6	34	6	34	y	0.00	0	7	0	7	n	0.21	7	27	7	27	y	0.08	1	12	1	12	n	0.15	5	28	5	28	y	0.09	4	41	4	41	n	0.06	3	44	3	44	n	0.22	10	35	10	35	y	ENSMUSG00000018861.9	Fdxr	chr11	protein_coding	ferredoxin reductase
novel_NIR_2577	chr11	115167008	115168091	-	115167008	115167635	5pMXE	ENSMUST00000021078.3	novel	0.54	19	16	19	16	y	0.53	24	21	24	21	y	0.58	18	13	18	13	y	0.28	10	26	10	26	y	0.15	6	34	6	34	y	0.12	1	7	1	7	n	0.31	12	27	12	27	y	0.40	8	12	8	12	y	0.32	13	28	13	28	y	0.24	13	41	13	41	y	0.15	8	44	8	44	y	0.33	17	35	17	35	y	ENSMUSG00000018861.9	Fdxr	chr11	protein_coding	ferredoxin reductase
novel_NIR_2578	chr11	115294780	115297377	+	115294699	115297377	A5SS	ENSMUST00000103036.5	novel	0.00	0	19	0	19	n	0.00	0	17	0	17	n	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.00	0	18	0	18	n	0.00	0	9	0	9	n	0.07	1	14	1	14	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.27	4	11	4	11	y	0.06	1	15	1	15	n	0.00	0	11	0	11	n	ENSMUSG00000018858.16	Mrpl58	chr11	protein_coding	mitochondrial ribosomal protein L58
novel_NIR_2579	chr11	115309279	115310718	-	115309376	115310718	A3SS	ENSMUST00000073791.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.67	4	2	4	2	y	0.00	0	1	0	1	n	ENSMUSG00000034566.11	Atp5h	chr11	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D
novel_NIR_2580	chr11	115309279	115310718	-	115310119	115310718	A3SS&ES	ENSMUST00000106537.8	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	4	0	4	0	y	-	-	-	-	-	-	ENSMUSG00000034566.11	Atp5h	chr11	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D
novel_NIR_2581	chr11	115309342	115310332	-	115309342	115309525	5pMXE	ENSMUST00000137754.2	novel	0.25	1	3	1	3	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	5	0	5	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.67	2	1	2	1	y	0.50	2	2	2	2	y	0.00	0	1	0	1	n	ENSMUSG00000034566.11	Atp5h	chr11	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D
novel_NIR_2582	chr11	115309342	115310332	-	115309342	115310018	A5SS&ES	ENSMUST00000106537.8	novel	0.50	1	1	1	1	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.29	2	5	2	5	y	0.20	2	8	2	8	y	-	-	-	-	-	-	ENSMUSG00000034566.11	Atp5h	chr11	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D
novel_NIR_2583	chr11	115309342	115310582	-	115309342	115309525	5pMXE	ENSMUST00000137754.2	novel	0.25	1	3	1	3	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.50	3	3	3	3	y	1.00	1	0	1	0	n	0.55	6	5	6	5	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.83	5	1	5	1	y	0.33	1	2	1	2	n	0.83	5	1	5	1	y	ENSMUSG00000034566.11	Atp5h	chr11	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D
novel_NIR_2584	chr11	115309342	115310582	-	115309342	115310018	A5SS&ES	ENSMUST00000106537.8	novel	0.50	1	1	1	1	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.29	2	5	2	5	y	0.75	3	1	3	1	y	1.00	1	0	1	0	n	0.67	6	3	6	3	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	5	5	5	5	y	0.11	1	8	1	8	n	1.00	5	0	5	0	y	ENSMUSG00000034566.11	Atp5h	chr11	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D
novel_NIR_2585	chr11	115310119	115310582	-	115310119	115310718	A5SS	ENSMUST00000106537.8	novel	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000034566.11	Atp5h	chr11	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D
novel_NIR_2586	chr11	115320231	115320334	+	115320231	115320461	A3SS	ENSMUST00000143775.2	novel	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	16	0	16	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000016940.19	Kctd2	chr11	protein_coding	potassium channel tetramerisation domain containing 2
novel_NIR_2587	chr11	115320231	115320334	+	115320231	115320712	A3SS	ENSMUST00000123345.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000016940.19	Kctd2	chr11	protein_coding	potassium channel tetramerisation domain containing 2
novel_NIR_2588	chr11	115320231	115320802	+	115320231	115320461	A3SS&ES	ENSMUST00000143775.2	novel	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	16	0	16	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000016940.19	Kctd2	chr11	protein_coding	potassium channel tetramerisation domain containing 2
novel_NIR_2589	chr11	115320231	115320802	+	115320231	115320712	A3SS	ENSMUST00000123345.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.67	2	1	2	1	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000016940.19	Kctd2	chr11	protein_coding	potassium channel tetramerisation domain containing 2
novel_NIR_2590	chr11	115320852	115321139	+	115320231	115321139	A5SS	ENSMUST00000103035.10	novel	0.14	7	42	7	42	n	0.00	0	38	0	38	n	0.28	8	21	8	21	y	0.29	10	25	10	25	y	0.07	3	37	3	37	n	0.00	0	13	0	13	n	0.00	0	50	0	50	n	0.24	8	26	8	26	y	0.20	4	16	4	16	y	0.25	16	49	16	49	y	0.18	6	27	6	27	y	0.12	6	43	6	43	n	ENSMUSG00000016940.19	Kctd2	chr11	protein_coding	potassium channel tetramerisation domain containing 2
novel_NIR_2591	chr11	115381491	115381679	-	115381595	115381679	A3SS	ENSMUST00000106530.8	novel	0.00	0	2	0	2	n	0.57	8	6	8	6	y	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.88	7	1	7	1	y	0.00	0	3	0	3	n	0.40	2	3	2	3	y	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.62	5	3	5	3	y	ENSMUSG00000020736.13	Nt5c	chr11	protein_coding	5',3'-nucleotidase, cytosolic
novel_NIR_2592	chr11	115381564	115381679	-	115381595	115381679	A3SS	ENSMUST00000106530.8	novel	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000020736.13	Nt5c	chr11	protein_coding	5',3'-nucleotidase, cytosolic
novel_NIR_2593	chr11	115478027	115478440	-	115478027	115478232	A5SS	ENSMUST00000019135.14	novel	0.17	2	10	2	10	y	0.00	0	16	0	16	n	0.00	0	17	0	17	n	0.00	0	16	0	16	n	0.00	0	22	0	22	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.12	1	7	1	7	n	0.06	1	15	1	15	n	ENSMUSG00000020740.14	Gga3	chr11	protein_coding	golgi associated, gamma adaptin ear containing, ARF binding protein 3
novel_NIR_2594	chr11	115481363	115481713	-	115481359	115481713	A3SS	ENSMUST00000019135.14	novel	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.19	3	13	3	13	y	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.08	1	11	1	11	n	ENSMUSG00000020740.14	Gga3	chr11	protein_coding	golgi associated, gamma adaptin ear containing, ARF binding protein 3
novel_NIR_2595	chr11	115500468	115502729	-	115500415	115502729	A3SS	ENSMUST00000137304.8	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000020743.16	Mif4gd	chr11	protein_coding	MIF4G domain containing
novel_NIR_2596	chr11	115500468	115502729	-	115501308	115502729	A3SS&ES	ENSMUST00000146244.8	novel	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.25	2	6	2	6	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	ENSMUSG00000020743.16	Mif4gd	chr11	protein_coding	MIF4G domain containing
novel_NIR_2597	chr11	115502761	115503611	-	115503090	115503611	3pMXE	ENSMUST00000139556.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	2	4	2	4	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000020743.16	Mif4gd	chr11	protein_coding	MIF4G domain containing
novel_NIR_2598	chr11	115502847	115503611	-	115503090	115503611	3pMXE	ENSMUST00000139556.2	novel	0.00	0	1	0	1	n	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	0.89	8	1	8	1	y	-	-	-	-	-	-	0.00	0	4	0	4	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	ENSMUSG00000020743.16	Mif4gd	chr11	protein_coding	MIF4G domain containing
novel_NIR_2599	chr11	115508457	115511703	-	115507477	115511703	A3SS	ENSMUST00000106503.10	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.67	2	1	2	1	n	0.50	1	1	1	1	n	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020744.14	Slc25a19	chr11	protein_coding	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19
novel_NIR_2600	chr11	115511873	115512374	-	115511873	115513464	A5SS	ENSMUST00000135552.2	novel	1.00	5	0	5	0	y	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000020744.14	Slc25a19	chr11	protein_coding	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19
novel_NIR_2601	chr11	115511873	115512374	-	115511873	115514244	A5SS	ENSMUST00000144083.8	novel	0.71	5	2	5	2	n	1.00	7	0	7	0	y	-	-	-	-	-	-	0.88	7	1	7	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	4	0	4	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000020744.14	Slc25a19	chr11	protein_coding	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19
novel_NIR_2602	chr11	115511873;115512539	115512374;115514698	-	115511873;115514418	115514244;115514698	MXE	ENSMUST00000144083.8	novel	0.82	4.5	1.0	5;4	2;0	y	1.00	3.5	0.0	7;0	0;0	n	-	-	-	-	-	-	0.90	4.5	0.5	7;2	1;0	y	-	-	-	-	-	-	1.00	1.0	0.0	2;0	0;0	n	0.00	0.0	0.5	0;0	0;1	n	1.00	0.5	0.0	1;0	0;0	n	0.80	2.0	0.5	4;0	0;1	n	0.86	3.0	0.5	4;2	0;1	y	1.00	1.0	0.0	2;0	0;0	n	0.75	1.5	0.5	0;3	0;1	n	ENSMUSG00000020744.14	Slc25a19	chr11	protein_coding	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19
novel_NIR_2603	chr11	115512539	115514698	-	115514418	115514698	3pMXE	ENSMUST00000150898.8	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.75	3	1	3	1	n	ENSMUSG00000020744.14	Slc25a19	chr11	protein_coding	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19
novel_NIR_2604	chr11	115512539	115514698	-	115514418	115514698	A3SS&ES	ENSMUST00000144083.8	novel	1.00	4	0	4	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	n	-	-	-	-	-	-	0.75	3	1	3	1	y	ENSMUSG00000020744.14	Slc25a19	chr11	protein_coding	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19
novel_NIR_2605	chr11	115513674	115514698	-	115514418	115514698	A3SS&ES	ENSMUST00000144083.8	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000020744.14	Slc25a19	chr11	protein_coding	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19
novel_NIR_2606	chr11	115513907	115514698	-	115514418	115514698	A3SS&ES	ENSMUST00000144083.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.67	2	1	2	1	y	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000020744.14	Slc25a19	chr11	protein_coding	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19
novel_NIR_2607	chr11	115536777	115537536	-	115536738	115537536	A3SS	ENSMUST00000106495.8	novel	1.00	8	0	8	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	8	0	8	n	-	-	-	-	-	-	ENSMUSG00000059923.14	Grb2	chr11	protein_coding	growth factor receptor bound protein 2
novel_NIR_2608	chr11	115590182	115599858	-	115590182	115590726	5pMXE	ENSMUST00000135065.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000059923.14	Grb2	chr11	protein_coding	growth factor receptor bound protein 2
novel_NIR_2609	chr11	115666715	115667159	+	115666715;115667036	115666897;115667159	ES	ENSMUST00000103033.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020747.19	Tmem94	chr11	protein_coding	transmembrane protein 94
novel_NIR_2610	chr11	115684100	115684837	+	115684100	115684834	A3SS	ENSMUST00000093912.11	novel	0.03	1	32	1	32	n	0.00	0	24	0	24	n	0.02	1	61	1	61	n	0.17	6	29	6	29	y	0.10	5	46	5	46	n	0.00	0	30	0	30	n	0.00	0	41	0	41	n	0.17	6	30	6	30	y	0.07	3	37	3	37	n	0.10	5	47	5	47	n	0.09	3	31	3	31	n	0.02	1	45	1	45	n	ENSMUSG00000020747.19	Tmem94	chr11	protein_coding	transmembrane protein 94
novel_NIR_2611	chr11	115711833	115712397	+	115711833	115712482	A3SS	ENSMUST00000021134.10	novel	0.00	0	32	0	32	n	0.06	2	30	2	30	n	0.13	4	26	4	26	n	0.00	0	15	0	15	n	0.05	2	36	2	36	n	0.08	1	11	1	11	n	0.04	1	26	1	26	n	0.23	5	17	5	17	y	0.20	1	4	1	4	n	0.25	4	12	4	12	y	0.00	0	21	0	21	n	0.00	0	12	0	12	n	ENSMUSG00000020781.15	Tsen54	chr11	protein_coding	tRNA splicing endonuclease subunit 54
novel_NIR_2612	chr11	115715003	115715851	+	115715003	115723488	A3SS	ENSMUST00000133250.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020782.19	Llgl2	chr11	protein_coding	LLGL2 scribble cell polarity complex component
novel_NIR_2613	chr11	115716078	115725623	+	115723008	115725623	5pMXE	ENSMUST00000172552.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000020782.19	Llgl2	chr11	protein_coding	LLGL2 scribble cell polarity complex component
novel_NIR_2614	chr11	115716078	115725623	+	115723744	115725623	A5SS&ES	ENSMUST00000133250.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000020782.19	Llgl2	chr11	protein_coding	LLGL2 scribble cell polarity complex component
novel_NIR_2615	chr11	115716078	115725623	+	115724878	115725623	5pMXE	ENSMUST00000155878.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000020782.19	Llgl2	chr11	protein_coding	LLGL2 scribble cell polarity complex component
novel_NIR_2616	chr11	115716078	115725623	+	115725191	115725623	5pMXE	ENSMUST00000137900.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000020782.19	Llgl2	chr11	protein_coding	LLGL2 scribble cell polarity complex component
novel_NIR_2617	chr11	115716078	115725623	+	115725305	115725623	5pMXE	ENSMUST00000173289.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000020782.19	Llgl2	chr11	protein_coding	LLGL2 scribble cell polarity complex component
novel_NIR_2618	chr11	115745401	115745886	+	115745401	115745558	3pMXE	ENSMUST00000130518.2	novel	0.50	3	3	3	3	y	0.00	0	3	0	3	n	0.40	4	6	4	6	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.67	2	1	2	1	y	0.00	0	4	0	4	n	0.75	3	1	3	1	y	1.00	5	0	5	0	y	0.57	4	3	4	3	y	0.60	3	2	3	2	y	ENSMUSG00000020782.19	Llgl2	chr11	protein_coding	LLGL2 scribble cell polarity complex component
novel_NIR_2619	chr11	115745401	115745886	+	115745401	115745889	A3SS	ENSMUST00000128826.2	novel	0.50	3	3	3	3	y	0.00	0	6	0	6	n	0.67	4	2	4	2	y	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.33	1	2	1	2	n	0.33	2	4	2	4	y	-	-	-	-	-	-	0.75	3	1	3	1	y	0.38	5	8	5	8	y	0.57	4	3	4	3	y	0.38	3	5	3	5	y	ENSMUSG00000020782.19	Llgl2	chr11	protein_coding	LLGL2 scribble cell polarity complex component
novel_NIR_2620	chr11	115745685	115745886	+	115745685	115745889	A3SS	ENSMUST00000103032.11	novel	0.28	16	42	16	42	y	0.17	10	49	10	49	y	0.40	20	30	20	30	y	0.09	4	43	4	43	n	0.20	13	51	13	51	y	0.21	6	23	6	23	y	0.10	8	72	8	72	n	0.06	2	30	2	30	n	0.11	6	47	6	47	n	0.20	15	60	15	60	y	0.09	6	58	6	58	n	0.08	4	48	4	48	n	ENSMUSG00000020782.19	Llgl2	chr11	protein_coding	LLGL2 scribble cell polarity complex component
novel_NIR_2621	chr11	115762352	115762453	+	115762352	115762456	A3SS	ENSMUST00000093911.11	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034427.18	Myo15b	chr11	protein_coding	myosin XVB
novel_NIR_2622	chr11	115762501	115762598	+	115762501	115762627	A3SS	ENSMUST00000093911.11	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034427.18	Myo15b	chr11	protein_coding	myosin XVB
novel_NIR_2623	chr11	115786808	115787602	-	115786808;115786961	115786925;115787602	ES	ENSMUST00000021097.10	novel	0.00	0	20.0	0	22;18	n	0.00	0	17.5	0	19;16	n	0.00	0	21.0	0	24;18	n	0.06	1	15.0	1	17;13	n	0.10	2	19.0	2	21;17	n	0.16	2	10.5	2	13;8	y	0.00	0	27.0	0	25;29	n	0.00	0	19.0	0	21;17	n	0.00	0	16.5	0	19;14	n	0.00	0	24.0	0	29;19	n	0.00	0	18.0	0	21;15	n	0.00	0	18.5	0	22;15	n	ENSMUSG00000020752.12	Recql5	chr11	protein_coding	RecQ protein-like 5
novel_NIR_2624	chr11	115786808	115787867	-	115787701	115787867	3pMXE	ENSMUST00000147172.2	novel	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	25	0	25	n	0.00	0	13	0	13	n	0.00	0	20	0	20	n	0.22	2	7	2	7	y	0.00	0	18	0	18	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.00	0	29	0	29	n	0.00	0	19	0	19	n	0.00	0	11	0	11	n	ENSMUSG00000020752.12	Recql5	chr11	protein_coding	RecQ protein-like 5
novel_NIR_2625	chr11	115788085	115801265	-	115788085	115795711	A5SS&ES	ENSMUST00000131578.8	novel	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.20	1	4	1	4	n	ENSMUSG00000020752.12	Recql5	chr11	protein_coding	RecQ protein-like 5
novel_NIR_2626	chr11	115788085	115801265	-	115788085	115798009	5pMXE	ENSMUST00000147172.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000020752.12	Recql5	chr11	protein_coding	RecQ protein-like 5
novel_NIR_2627	chr11	115788085	115801265	-	115788085	115807805	A5SS	ENSMUST00000021097.10	novel	0.00	0	19	0	19	n	0.00	0	22	0	22	n	0.00	0	15	0	15	n	0.00	0	20	0	20	n	0.00	0	24	0	24	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.00	0	8	0	8	n	0.00	0	17	0	17	n	0.17	2	10	2	10	y	0.00	0	9	0	9	n	0.06	1	15	1	15	n	ENSMUSG00000020752.12	Recql5	chr11	protein_coding	RecQ protein-like 5
novel_NIR_2628	chr11	115828883	115836912	+	115828883	115829181	3pMXE	ENSMUST00000131737.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020755.10	Sap30bp	chr11	protein_coding	SAP30 binding protein
novel_NIR_2629	chr11	115915544	115918682	-	115915544;115916281	115916131;115918682	ES	ENSMUST00000106454.8	novel	1.00	2	0.0	2	0;0	y	0.00	0	0.5	0	1;0	n	0.00	0	3.5	0	3;4	n	0.00	0	3.5	0	5;2	n	0.00	0	0.5	0	0;1	n	0.00	0	3.0	0	5;1	n	0.00	0	2.5	0	4;1	n	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	0.00	0	1.5	0	3;0	n	0.00	0	2.0	0	3;1	n	0.00	0	2.5	0	1;4	n	ENSMUSG00000016559.15	H3f3b	chr11	protein_coding	H3.3 histone B
novel_NIR_2630	chr11	115945821	115946807	+	115945837	115946807	A5SS	ENSMUST00000021116.12	novel	0.18	2	9	2	9	y	0.14	1	6	1	6	n	0.00	0	15	0	15	n	0.00	0	16	0	16	n	0.00	0	25	0	25	n	0.00	0	6	0	6	n	0.12	1	7	1	7	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.13	2	13	2	13	n	0.00	0	9	0	9	n	0.00	0	18	0	18	n	ENSMUSG00000020770.14	Unk	chr11	protein_coding	unkempt family zinc finger
novel_NIR_2631	chr11	115947205	115949153	+	115947205	115949069	A3SS	ENSMUST00000021116.12	novel	0.11	1	8	1	8	n	0.00	0	8	0	8	n	0.05	1	21	1	21	n	0.11	1	8	1	8	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.18	2	9	2	9	y	0.00	0	17	0	17	n	ENSMUSG00000020770.14	Unk	chr11	protein_coding	unkempt family zinc finger
novel_NIR_2632	chr11	115947205	115949153	+	115947205	115949815	A3SS	ENSMUST00000140683.2	novel	0.50	1	1	1	1	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.67	2	1	2	1	y	-	-	-	-	-	-	ENSMUSG00000020770.14	Unk	chr11	protein_coding	unkempt family zinc finger
novel_NIR_2633	chr11	115955169	115955371	-	115955192	115955371	A3SS	ENSMUST00000106450.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000057948.13	Unc13d	chr11	protein_coding	unc-13 homolog D
novel_NIR_2634	chr11	116069639	116071117	-	116069670	116071117	A3SS	ENSMUST00000130229.8	novel	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.19	3	13	3	13	y	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.65	11	6	11	6	y	0.00	0	4	0	4	n	0.38	5	8	5	8	y	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.50	10	10	10	10	y	ENSMUSG00000020777.17	Acox1	chr11	protein_coding	acyl-Coenzyme A oxidase 1, palmitoyl
novel_NIR_2635	chr11	116069670	116070493	-	116069670	116071117	A5SS	ENSMUST00000130229.8	novel	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.13	2	13	2	13	n	0.20	2	8	2	8	y	0.22	2	7	2	7	y	0.00	0	5	0	5	n	0.14	1	6	1	6	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.07	1	13	1	13	n	0.00	0	10	0	10	n	ENSMUSG00000020777.17	Acox1	chr11	protein_coding	acyl-Coenzyme A oxidase 1, palmitoyl
novel_NIR_2636	chr11	116069670;116070532	116070493;116071117	-	116069670	116071117	cassetteExon	ENSMUST00000130229.8	novel	0.00	0.0	3	0;0	3	n	0.00	0.0	7	0;0	7	n	0.37	7.5	13	2;13	13	y	0.11	1.0	8	2;0	8	n	0.12	1.0	7	2;0	7	n	0.00	0.0	5	0;0	5	n	0.08	0.5	6	1;0	6	n	0.00	0.0	4	0;0	4	n	0.00	0.0	8	0;0	8	n	0.00	0.0	7	0;0	7	n	0.04	0.5	13	1;0	13	n	0.00	0.0	10	0;0	10	n	ENSMUSG00000020777.17	Acox1	chr11	protein_coding	acyl-Coenzyme A oxidase 1, palmitoyl
novel_NIR_2637	chr11	116070597	116071117	-	116069670	116071117	A3SS	ENSMUST00000130229.8	novel	0.73	8	3	8	3	y	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	ENSMUSG00000020777.17	Acox1	chr11	protein_coding	acyl-Coenzyme A oxidase 1, palmitoyl
novel_NIR_2638	chr11	116074377	116080241	-	116074450	116080241	A3SS	ENSMUST00000148601.2	novel	0.00	0	18	0	18	n	0.00	0	16	0	16	n	0.00	0	53	0	53	n	0.00	0	31	0	31	n	0.00	0	40	0	40	n	0.04	1	25	1	25	n	0.00	0	37	0	37	n	0.00	0	22	0	22	n	0.19	5	22	5	22	y	0.00	0	40	0	40	n	0.00	0	38	0	38	n	0.00	0	49	0	49	n	ENSMUSG00000020777.17	Acox1	chr11	protein_coding	acyl-Coenzyme A oxidase 1, palmitoyl
novel_NIR_2639	chr11	116101872	116102778	+	116101872	116105665	A3SS	ENSMUST00000135460.2	novel	-	-	-	-	-	-	0.00	0	5	0	5	n	0.17	1	5	1	5	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	1.00	1	0	1	0	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.27	4	11	4	11	y	0.00	0	6	0	6	n	0.00	0	1	0	1	n	ENSMUSG00000020778.13	Ten1	chr11	protein_coding	TEN1 telomerase capping complex subunit
novel_NIR_2640	chr11	116143616	116145128	-	116137074	116145128	A3SS	ENSMUST00000127205.8	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	ENSMUSG00000020780.16	Srp68	chr11	protein_coding	signal recognition particle 68
novel_NIR_2641	chr11	116187624	116188397	-	116186515	116188397	A3SS	ENSMUST00000106413.10	novel	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.67	4	2	4	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000020792.16	Exoc7	chr11	protein_coding	exocyst complex component 7
novel_NIR_2642	chr11	116187624	116188397	-	116187624	116191092	A5SS	ENSMUST00000126731.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.67	4	2	4	2	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	ENSMUSG00000020792.16	Exoc7	chr11	protein_coding	exocyst complex component 7
novel_NIR_2643	chr11	116187624	116188397	-	116187706	116188397	A3SS	ENSMUST00000139699.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000020792.16	Exoc7	chr11	protein_coding	exocyst complex component 7
novel_NIR_2644	chr11	116425557	116425678	+	116424999	116425678	A5SS	ENSMUST00000138840.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000061878.17	Sphk1	chr11	protein_coding	sphingosine kinase 1
novel_NIR_2645	chr11	116432049	116432148	-	116432049	116432165	A5SS	ENSMUST00000134102.2	novel	0.00	0	21	0	21	n	0.15	3	17	3	17	y	0.00	0	24	0	24	n	0.00	0	12	0	12	n	0.00	0	17	0	17	n	0.00	0	2	0	2	n	0.00	0	23	0	23	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	23	0	23	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	ENSMUSG00000020802.9	Ube2o	chr11	protein_coding	ubiquitin-conjugating enzyme E2O
novel_NIR_2646	chr11	116435646	116435947	-	116435646	116435872	A5SS	ENSMUST00000082152.5	novel	0.40	4	6	4	6	y	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.08	1	11	1	11	n	0.12	1	7	1	7	n	0.50	1	1	1	1	n	0.17	2	10	2	10	y	0.12	2	14	2	14	n	0.08	1	12	1	12	n	ENSMUSG00000020802.9	Ube2o	chr11	protein_coding	ubiquitin-conjugating enzyme E2O
novel_NIR_2647	chr11	116494876	116495209	-	116494876	116495204	A5SS	ENSMUST00000103029.10	novel	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.06	3	47	3	47	n	0.06	1	16	1	16	n	0.17	4	20	4	20	y	0.10	2	18	2	18	n	0.14	4	25	4	25	n	0.12	2	14	2	14	n	0.00	0	6	0	6	n	0.00	0	17	0	17	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	ENSMUSG00000020806.16	Rhbdf2	chr11	protein_coding	rhomboid 5 homolog 2
novel_NIR_2648	chr11	116537818	116540098	-	116537818	116540109	A5SS	ENSMUST00000021166.6	novel	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	27	0	27	n	0.00	0	7	0	7	n	0.00	0	19	0	19	n	0.00	0	13	0	13	n	0.00	0	39	0	39	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.23	3	10	3	10	y	ENSMUSG00000020810.6	Cygb	chr11	protein_coding	cytoglobin
novel_NIR_2649	chr11	116537818	116540126	-	116537818	116540109	A5SS	ENSMUST00000021166.6	novel	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	27	0	27	n	0.00	0	7	0	7	n	0.00	0	19	0	19	n	0.00	0	13	0	13	n	0.00	0	39	0	39	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.20	2	8	2	8	y	0.00	0	6	0	6	n	0.00	0	10	0	10	n	ENSMUSG00000020810.6	Cygb	chr11	protein_coding	cytoglobin
novel_NIR_2650	chr11	116698794	116702749	-	116695480	116702749	A3SS	ENSMUST00000021170.9	novel	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.17	2	10	2	10	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000020814.14	Mxra7	chr11	protein_coding	matrix-remodelling associated 7
novel_NIR_2651	chr11	116698794	116702749	-	116698794;116701693	116701606;116702749	ES	ENSMUST00000150015.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1.0	0	0;2	n	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	0.5	0	0;1	n	ENSMUSG00000020814.14	Mxra7	chr11	protein_coding	matrix-remodelling associated 7
novel_NIR_2652	chr11	116698794	116702749	-	116698794;116701693	116701614;116702749	ES	ENSMUST00000047715.12	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1.5	0	1;2	n	0.00	0	0.5	0	1;0	n	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1.0	0	1;1	n	ENSMUSG00000020814.14	Mxra7	chr11	protein_coding	matrix-remodelling associated 7
novel_NIR_2653	chr11	116729954	116730469	-	116729954	116731895	A5SS	ENSMUST00000142495.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000056962.12	Jmjd6	chr11	protein_coding	jumonji domain containing 6
novel_NIR_2654	chr11	116729954	116731274	-	116729954	116730664	A5SS	ENSMUST00000141735.8	novel	0.25	3	9	3	9	y	0.17	3	15	3	15	y	0.53	10	9	10	9	y	0.11	2	17	2	17	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.06	1	15	1	15	n	0.00	0	3	0	3	n	0.22	2	7	2	7	y	0.00	0	9	0	9	n	0.38	3	5	3	5	y	0.00	0	6	0	6	n	ENSMUSG00000056962.12	Jmjd6	chr11	protein_coding	jumonji domain containing 6
novel_NIR_2655	chr11	116729954	116731274	-	116729954	116731236	A5SS	ENSMUST00000047616.10	novel	0.08	3	35	3	35	n	0.07	3	38	3	38	n	0.15	10	57	10	57	y	0.08	2	22	2	22	n	0.00	0	42	0	42	n	0.00	0	15	0	15	n	0.02	1	45	1	45	n	0.00	0	14	0	14	n	0.07	2	28	2	28	n	0.00	0	26	0	26	n	0.10	3	28	3	28	n	0.00	0	27	0	27	n	ENSMUSG00000056962.12	Jmjd6	chr11	protein_coding	jumonji domain containing 6
novel_NIR_2656	chr11	116729954	116731274	-	116729954	116731895	A5SS	ENSMUST00000142495.8	novel	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	10	0	10	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000056962.12	Jmjd6	chr11	protein_coding	jumonji domain containing 6
novel_NIR_2657	chr11	116729954	116731274	-	116729954;116730752	116730664;116731274	ES	ENSMUST00000124831.2	novel	0.26	3	8.5	3	9;8	y	0.23	3	10.0	3	15;5	y	0.56	10	8.0	10	9;7	y	0.12	2	14.0	2	17;11	n	0.00	0	12.0	0	13;11	n	0.00	0	5.5	0	7;4	n	0.09	1	10.0	1	15;5	n	0.00	0	1.5	0	3;0	n	0.29	2	5.0	2	7;3	y	0.00	0	7.5	0	9;6	n	0.43	3	4.0	3	5;3	y	0.00	0	4.5	0	6;3	n	ENSMUSG00000056962.12	Jmjd6	chr11	protein_coding	jumonji domain containing 6
novel_NIR_2658	chr11	116741787	116741878	-	116741787	116742317	A5SS	ENSMUST00000177429.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000034120.19	Srsf2	chr11	protein_coding	serine and arginine-rich splicing factor 2
novel_NIR_2659	chr11	116742505	116742847	-	116742577	116742847	A3SS	ENSMUST00000136914.8	novel	0.00	0	21	0	21	n	0.00	0	14	0	14	n	0.00	0	24	0	24	n	0.15	3	17	3	17	y	0.00	0	33	0	33	n	0.00	0	9	0	9	n	0.00	0	43	0	43	n	0.17	2	10	2	10	y	0.00	0	12	0	12	n	0.00	0	32	0	32	n	0.00	0	23	0	23	n	0.08	3	36	3	36	n	ENSMUSG00000034120.19	Srsf2	chr11	protein_coding	serine and arginine-rich splicing factor 2
novel_NIR_2660	chr11	116743686	116744826	+	116739964	116744826	A5SS	ENSMUST00000143184.2	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	14	0	14	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	ENSMUSG00000090266.11	Mettl23	chr11	protein_coding	methyltransferase like 23
novel_NIR_2661	chr11	116743686	116744826	+	116743681	116744826	A5SS	ENSMUST00000139954.9	novel	-	-	-	-	-	-	0.00	0	8	0	8	n	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	14	0	14	0	y	-	-	-	-	-	-	0.00	0	9	0	9	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	ENSMUSG00000020818.17	Mfsd11	chr11	protein_coding	major facilitator superfamily domain containing 11
novel_NIR_2662	chr11	116743686	116744826	+	116744583	116744826	5pMXE	ENSMUST00000135135.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.83	5	1	5	1	y	0.88	14	2	14	2	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	ENSMUSG00000020818.17	Mfsd11	chr11	protein_coding	major facilitator superfamily domain containing 11
novel_NIR_2663	chr11	116743686	116744826	+	116744729	116744826	5pMXE	ENSMUST00000136012.8	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.38	5	8	5	8	y	0.56	14	11	14	11	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.10	1	9	1	9	n	0.36	4	7	4	7	y	0.00	0	5	0	5	n	0.47	7	8	7	8	y	ENSMUSG00000020818.17	Mfsd11	chr11	protein_coding	major facilitator superfamily domain containing 11
novel_NIR_2664	chr11	116750419	116752349	+	116750204	116752349	A5SS	ENSMUST00000153084.3	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000020818.17	Mfsd11	chr11	protein_coding	major facilitator superfamily domain containing 11
novel_NIR_2665	chr11	116967780	116967934	+	116967194	116967934	A5SS	ENSMUST00000232695.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000086859.5	Snhg20	chr11	lncRNA	small nucleolar RNA host gene 20
novel_NIR_2666	chr11	116967780	116967934	+	116967403	116967934	A5SS	ENSMUST00000233685.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000086859.5	Snhg20	chr11	lncRNA	small nucleolar RNA host gene 20
novel_NIR_2667	chr11	116967780	116967934	+	116967587	116967934	A5SS	ENSMUST00000232907.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000086859.5	Snhg20	chr11	lncRNA	small nucleolar RNA host gene 20
novel_NIR_2668	chr11	116967780	116967934	+	116967724	116967934	A5SS	ENSMUST00000145438.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000086859.5	Snhg20	chr11	lncRNA	small nucleolar RNA host gene 20
novel_NIR_2669	chr11	117168121	117181224	+	117123545	117181224	A5SS	ENSMUST00000106354.9	novel	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	7	0	7	n	ENSMUSG00000059248.14	Septin9	chr11	protein_coding	septin 9
novel_NIR_2670	chr11	117168121	117181224	+	117157421	117181224	A5SS	ENSMUST00000019038.15	novel	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.50	1	1	1	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000059248.14	Septin9	chr11	protein_coding	septin 9
novel_NIR_2671	chr11	117593226	117593862	+	117593226	117604952	A3SS	ENSMUST00000026658.13	novel	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.14	1	6	1	6	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.17	2	10	2	10	y	0.12	1	7	1	7	n	ENSMUSG00000025571.14	Tnrc6c	chr11	protein_coding	trinucleotide repeat containing 6C
novel_NIR_2672	chr11	117630835	117633753	+	117630835;117632644	117632471;117633753	ES	ENSMUST00000026658.13	novel	0.00	0	3.0	0	0;6	n	0.93	7	0.5	7	0;1	y	0.96	13	0.5	13	0;1	y	0.00	0	1.0	0	0;2	n	0.52	7	6.5	7	0;13	y	0.80	8	2.0	8	0;4	y	0.67	7	3.5	7	0;7	y	0.50	1	1.0	1	0;2	n	0.73	4	1.5	4	0;3	y	0.73	11	4.0	11	0;8	y	0.91	5	0.5	5	0;1	y	0.75	3	1.0	3	0;2	y	ENSMUSG00000025571.14	Tnrc6c	chr11	protein_coding	trinucleotide repeat containing 6C
novel_NIR_2673	chr11	117630835	117633753	+	117630835;117632644	117632495;117633753	ES	ENSMUST00000138299.2	novel	0.00	0	3.5	0	1;6	n	0.82	7	1.5	7	2;1	y	0.74	13	4.5	13	8;1	y	0.00	0	3.5	0	5;2	n	0.41	7	10.0	7	7;13	y	0.59	8	5.5	8	7;4	y	0.56	7	5.5	7	4;7	y	0.25	1	3.0	1	4;2	n	0.50	4	4.0	4	5;3	y	0.65	11	6.0	11	4;8	y	0.67	5	2.5	5	4;1	y	0.55	3	2.5	3	3;2	y	ENSMUSG00000025571.14	Tnrc6c	chr11	protein_coding	trinucleotide repeat containing 6C
novel_NIR_2674	chr11	117660352	117660574	-	117660352	117661295	A5SS	ENSMUST00000131606.8	novel	0.03	1	28	1	28	n	0.11	3	25	3	25	n	0.17	3	15	3	15	y	0.17	5	24	5	24	y	0.04	1	25	1	25	n	0.00	0	22	0	22	n	0.15	5	28	5	28	y	0.00	0	12	0	12	n	0.08	2	22	2	22	n	0.03	1	33	1	33	n	0.07	2	26	2	26	n	0.03	1	34	1	34	n	ENSMUSG00000025572.19	Tmc6	chr11	protein_coding	transmembrane channel-like gene family 6
novel_NIR_2675	chr11	117663924	117664201	-	117663924	117664189	A5SS	ENSMUST00000131606.8	novel	0.17	3	15	3	15	y	0.19	3	13	3	13	y	0.44	4	5	4	5	y	0.12	3	21	3	21	n	0.00	0	24	0	24	n	0.11	1	8	1	8	n	0.14	3	19	3	19	n	0.20	3	12	3	12	y	0.16	3	16	3	16	y	0.04	1	25	1	25	n	0.33	3	6	3	6	y	0.10	2	19	2	19	n	ENSMUSG00000025572.19	Tmc6	chr11	protein_coding	transmembrane channel-like gene family 6
novel_NIR_2676	chr11	117670117	117670820	-	117670117	117670252	A5SS&ES	ENSMUST00000127227.2	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025572.19	Tmc6	chr11	protein_coding	transmembrane channel-like gene family 6
novel_NIR_2677	chr11	117670117	117670820	-	117670117	117670370	5pMXE	ENSMUST00000131606.8	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000025572.19	Tmc6	chr11	protein_coding	transmembrane channel-like gene family 6
novel_NIR_2678	chr11	117670117	117670820	-	117670117	117671362	A5SS	ENSMUST00000026659.10	novel	0.43	3	4	3	4	y	0.12	1	7	1	7	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.00	0	16	0	16	n	0.00	0	2	0	2	n	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	22	0	22	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	ENSMUSG00000025572.19	Tmc6	chr11	protein_coding	transmembrane channel-like gene family 6
novel_NIR_2679	chr11	117670117	117670820	-	117670117	117671736	A5SS	ENSMUST00000136729.8	novel	1.00	3	0	3	0	y	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025572.19	Tmc6	chr11	protein_coding	transmembrane channel-like gene family 6
novel_NIR_2680	chr11	117670117	117670820	-	117670117	117672276	A5SS	ENSMUST00000152304.3	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025572.19	Tmc6	chr11	protein_coding	transmembrane channel-like gene family 6
novel_NIR_2681	chr11	117676093	117677325	+	117676093	117677213	A3SS	ENSMUST00000050874.14	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000050106.19	Tmc8	chr11	protein_coding	transmembrane channel-like gene family 8
novel_NIR_2682	chr11	117708095	117723171	+	117700629	117723171	A5SS	ENSMUST00000132298.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000093485.2	Gm20708	chr11	protein_coding	predicted gene 20708
novel_NIR_2683	chr11	117715607	117716038	-	117715607	117716540	A5SS	ENSMUST00000154790.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	5	0	5	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.25	1	3	1	3	n	1.00	3	0	3	0	y	ENSMUSG00000025574.14	Tk1	chr11	protein_coding	thymidine kinase 1
novel_NIR_2684	chr11	117716832	117723171	+	117700629	117723171	A5SS	ENSMUST00000132298.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	7	0	7	0	y	1.00	4	0	4	0	y	ENSMUSG00000093485.2	Gm20708	chr11	protein_coding	predicted gene 20708
novel_NIR_2685	chr11	117720438	117723171	+	117700629	117723171	A5SS	ENSMUST00000132298.2	novel	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000093485.2	Gm20708	chr11	protein_coding	predicted gene 20708
novel_NIR_2686	chr11	117722559	117723171	+	117700629	117723171	A5SS	ENSMUST00000132298.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000093485.2	Gm20708	chr11	protein_coding	predicted gene 20708
novel_NIR_2687	chr11	117723402	117725557	+	117723402	117725772	A3SS	ENSMUST00000131268.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000017718.16	Afmid	chr11	protein_coding	arylformamidase
novel_NIR_2688	chr11	117723402	117725557	+	117723402	117729319	A3SS	ENSMUST00000132298.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000093485.2	Gm20708	chr11	protein_coding	predicted gene 20708
novel_NIR_2689	chr11	117723402	117725598	+	117723402	117725772	A3SS	ENSMUST00000131268.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.67	4	2	4	2	y	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000017718.16	Afmid	chr11	protein_coding	arylformamidase
novel_NIR_2690	chr11	117723402	117725598	+	117723402	117729319	A3SS	ENSMUST00000132298.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.67	4	2	4	2	y	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000093485.2	Gm20708	chr11	protein_coding	predicted gene 20708
novel_NIR_2691	chr11	117892541	117893218	+	117892541	117893177	A3SS	ENSMUST00000132676.8	novel	0.00	0	25	0	25	n	0.00	0	25	0	25	n	0.11	5	42	5	42	n	0.17	4	20	4	20	y	0.12	5	35	5	35	n	0.00	0	26	0	26	n	0.00	0	48	0	48	n	0.00	0	16	0	16	n	0.00	0	21	0	21	n	0.00	0	33	0	33	n	0.00	0	17	0	17	n	0.00	0	28	0	28	n	ENSMUSG00000017715.12	Pgs1	chr11	protein_coding	phosphatidylglycerophosphate synthase 1
novel_NIR_2692	chr11	118024200	118024327	-	118024200	118059842	A5SS	ENSMUST00000100181.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000017132.18	Cyth1	chr11	protein_coding	cytohesin 1
novel_NIR_2693	chr11	11803614	11813651	-	11812493	11813651	3pMXE	ENSMUST00000146359.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020182.17	Ddc	chr11	protein_coding	dopa decarboxylase
novel_NIR_2694	chr11	118068122	118071028	-	118068122	118073046	A5SS	ENSMUST00000100181.11	novel	0.00	0	33	0	33	n	0.06	1	16	1	16	n	0.22	5	18	5	18	y	0.04	2	44	2	44	n	0.00	0	31	0	31	n	0.14	1	6	1	6	n	0.00	0	23	0	23	n	0.00	0	18	0	18	n	0.05	1	20	1	20	n	0.00	0	33	0	33	n	0.03	1	31	1	31	n	0.04	1	26	1	26	n	ENSMUSG00000017132.18	Cyth1	chr11	protein_coding	cytohesin 1
novel_NIR_2695	chr11	11810937	11813651	-	11812493	11813651	3pMXE	ENSMUST00000146359.8	novel	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000020182.17	Ddc	chr11	protein_coding	dopa decarboxylase
novel_NIR_2696	chr11	11811429	11813651	-	11812493	11813651	3pMXE	ENSMUST00000146359.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020182.17	Ddc	chr11	protein_coding	dopa decarboxylase
novel_NIR_2697	chr11	11813356	11813651	-	11812493	11813651	A3SS	ENSMUST00000146359.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	ENSMUSG00000020182.17	Ddc	chr11	protein_coding	dopa decarboxylase
novel_NIR_2698	chr11	118176825	118177480	-	118176825	118178493	A5SS	ENSMUST00000106296.9	novel	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.20	1	4	1	4	n	0.08	1	11	1	11	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.25	2	6	2	6	y	0.00	0	9	0	9	n	0.00	0	10	0	10	n	ENSMUSG00000033909.18	Usp36	chr11	protein_coding	ubiquitin specific peptidase 36
novel_NIR_2699	chr11	118176825	118178426	-	118176825	118178493	A5SS	ENSMUST00000106296.9	novel	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.16	3	16	3	16	y	0.71	10	4	10	4	y	0.31	5	11	5	11	y	0.00	0	10	0	10	n	0.20	2	8	2	8	y	0.23	3	10	3	10	y	0.33	2	4	2	4	y	0.25	2	6	2	6	y	0.00	0	9	0	9	n	0.23	3	10	3	10	y	ENSMUSG00000033909.18	Usp36	chr11	protein_coding	ubiquitin specific peptidase 36
novel_NIR_2700	chr11	118302337	118305424	-	118302337	118306556	A5SS	ENSMUST00000164927.2	novel	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	7	0	7	0	n	1.00	4	0	4	0	y	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000025575.15	Cant1	chr11	protein_coding	calcium activated nucleotidase 1
novel_NIR_2701	chr11	11830650	11832252	-	11830650	11840338	A5SS	ENSMUST00000109659.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	ENSMUSG00000020182.17	Ddc	chr11	protein_coding	dopa decarboxylase
novel_NIR_2702	chr11	11830650	11832252	-	11830650	11848008	A5SS	ENSMUST00000066237.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	ENSMUSG00000020182.17	Ddc	chr11	protein_coding	dopa decarboxylase
novel_NIR_2703	chr11	118308480	118309746	-	118308480	118309798	A5SS	ENSMUST00000106287.8	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000025575.15	Cant1	chr11	protein_coding	calcium activated nucleotidase 1
novel_NIR_2704	chr11	118330090	118334518	+	118319394	118334518	A5SS	ENSMUST00000017590.9	novel	0.00	0	20	0	20	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.25	2	6	2	6	y	ENSMUSG00000017446.15	C1qtnf1	chr11	protein_coding	C1q and tumor necrosis factor related protein 1
novel_NIR_2705	chr11	118330090	118334518	+	118324236	118334518	A5SS	ENSMUST00000124861.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000017446.15	C1qtnf1	chr11	protein_coding	C1q and tumor necrosis factor related protein 1
novel_NIR_2706	chr11	118330090	118334518	+	118324728	118334518	A5SS	ENSMUST00000106286.3	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000017446.15	C1qtnf1	chr11	protein_coding	C1q and tumor necrosis factor related protein 1
novel_NIR_2707	chr11	118330090	118334518	+	118334383	118334518	5pMXE	ENSMUST00000133558.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000017446.15	C1qtnf1	chr11	protein_coding	C1q and tumor necrosis factor related protein 1
novel_NIR_2708	chr11	119049718	119066173	-	119049718	119099597	A5SS	ENSMUST00000036113.4	novel	0.67	4	2	4	2	n	0.00	0	8	0	8	n	0.40	4	6	4	6	y	0.12	1	7	1	7	n	0.17	2	10	2	10	n	0.60	3	2	3	2	n	0.29	4	10	4	10	n	0.06	1	15	1	15	n	0.40	2	3	2	3	y	0.30	7	16	7	16	n	0.00	0	14	0	14	n	0.56	5	4	5	4	n	ENSMUSG00000039976.5	Tbc1d16	chr11	protein_coding	TBC1 domain family, member 16
novel_NIR_2709	chr11	119049718;119066217	119066173;119099597	-	119049718	119099597	cassetteExon	ENSMUST00000036113.4	novel	0.56	2.5	2	4;1	2	n	0.11	1.0	8	0;2	8	n	0.25	2.0	6	4;0	6	n	0.12	1.0	7	1;1	7	n	0.23	3.0	10	2;4	10	y	0.60	3.0	2	3;3	2	y	0.26	3.5	10	4;3	10	y	0.06	1.0	15	1;1	15	n	0.25	1.0	3	2;0	3	n	0.27	6.0	16	7;5	16	y	0.00	0.0	14	0;0	14	n	0.43	3.0	4	5;1	4	n	ENSMUSG00000039976.5	Tbc1d16	chr11	protein_coding	TBC1 domain family, member 16
novel_NIR_2710	chr11	119049718;119066220	119066173;119099597	-	119049718	119099597	cassetteExon	ENSMUST00000036113.4	novel	0.50	2.0	2	4;0	2	n	0.00	0.0	8	0;0	8	n	0.25	2.0	6	4;0	6	n	0.07	0.5	7	1;0	7	n	0.09	1.0	10	2;0	10	n	0.43	1.5	2	3;0	2	n	0.17	2.0	10	4;0	10	n	0.03	0.5	15	1;0	15	n	0.25	1.0	3	2;0	3	n	0.24	5.0	16	7;3	16	y	0.00	0.0	14	0;0	14	n	0.38	2.5	4	5;0	4	n	ENSMUSG00000039976.5	Tbc1d16	chr11	protein_coding	TBC1 domain family, member 16
novel_NIR_2711	chr11	119066217	119099597	-	119049718	119099597	A3SS	ENSMUST00000036113.4	novel	0.33	1	2	1	2	n	0.20	2	8	2	8	y	0.00	0	6	0	6	n	0.12	1	7	1	7	n	0.29	4	10	4	10	n	0.60	3	2	3	2	n	0.23	3	10	3	10	n	0.06	1	15	1	15	n	0.00	0	3	0	3	n	0.24	5	16	5	16	n	0.00	0	14	0	14	n	0.20	1	4	1	4	n	ENSMUSG00000039976.5	Tbc1d16	chr11	protein_coding	TBC1 domain family, member 16
novel_NIR_2712	chr11	119099807	119101331	-	119100194	119101331	A3SS	ENSMUST00000036113.4	novel	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	19	0	19	n	0.00	0	18	0	18	n	0.00	0	20	0	20	n	0.00	0	5	0	5	n	0.00	0	16	0	16	n	0.17	2	10	2	10	y	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.10	1	9	1	9	n	0.00	0	20	0	20	n	ENSMUSG00000039976.5	Tbc1d16	chr11	protein_coding	TBC1 domain family, member 16
novel_NIR_2713	chr11	119100264	119101331	-	119100194	119101331	A3SS	ENSMUST00000036113.4	novel	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.21	5	19	5	19	y	0.00	0	18	0	18	n	0.09	2	20	2	20	n	0.38	3	5	3	5	y	0.00	0	16	0	16	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.08	1	12	1	12	n	0.25	3	9	3	9	y	0.00	0	20	0	20	n	ENSMUSG00000039976.5	Tbc1d16	chr11	protein_coding	TBC1 domain family, member 16
novel_NIR_2714	chr11	119208142	119209128	+	119208142	119212649	A3SS	ENSMUST00000106250.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000013483.15	Card14	chr11	protein_coding	caspase recruitment domain family, member 14
novel_NIR_2715	chr11	119261625	119265311	+	119261625;119263997	119263937;119265311	ES	ENSMUST00000050880.8	novel	0.00	0	9.0	0	11;7	n	0.00	0	5.0	0	5;5	n	0.18	2	9.0	2	8;10	y	0.00	0	12.0	0	11;13	n	0.00	0	18.0	0	23;13	n	0.00	0	7.5	0	10;5	n	0.00	0	20.5	0	18;23	n	0.00	0	9.0	0	9;9	n	0.00	0	8.0	0	6;10	n	0.00	0	16.5	0	18;15	n	0.00	0	6.0	0	6;6	n	0.00	0	15.0	0	16;14	n	ENSMUSG00000039908.15	Slc26a11	chr11	protein_coding	solute carrier family 26, member 11
novel_NIR_2716	chr11	119293517	119296453	+	119293517	119299540	A3SS	ENSMUST00000093902.12	novel	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	ENSMUSG00000070327.15	Rnf213	chr11	protein_coding	ring finger protein 213
novel_NIR_2717	chr11	119296581	119299540	+	119293517	119299540	A5SS	ENSMUST00000093902.12	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.40	2	3	2	3	n	0.00	0	4	0	4	n	1.00	2	0	2	0	y	0.50	1	1	1	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.14	1	6	1	6	n	ENSMUSG00000070327.15	Rnf213	chr11	protein_coding	ring finger protein 213
novel_NIR_2718	chr11	119339699	119340068	+	119339699	119340071	A3SS	ENSMUST00000093902.12	novel	0.06	1	16	1	16	n	0.29	4	10	4	10	y	0.14	7	42	7	42	n	0.23	6	20	6	20	y	0.21	7	26	7	26	y	0.39	7	11	7	11	y	0.13	2	13	2	13	n	0.00	0	23	0	23	n	0.00	0	12	0	12	n	0.31	9	20	9	20	y	0.22	2	7	2	7	y	0.14	5	31	5	31	n	ENSMUSG00000070327.15	Rnf213	chr11	protein_coding	ring finger protein 213
novel_NIR_2719	chr11	119357240	119358053	+	119357252	119358053	A5SS	ENSMUST00000093902.12	novel	1.00	37	0	37	0	y	1.00	25	0	25	0	y	1.00	64	0	64	0	y	1.00	44	0	44	0	y	1.00	50	0	50	0	y	1.00	21	0	21	0	y	1.00	38	0	38	0	y	1.00	39	0	39	0	y	1.00	29	0	29	0	y	1.00	59	0	59	0	y	1.00	36	0	36	0	y	1.00	42	0	42	0	y	ENSMUSG00000070327.15	Rnf213	chr11	protein_coding	ring finger protein 213
novel_NIR_2720	chr11	119395993	119396309	+	119395993	119396414	A3SS	ENSMUST00000064513.9	novel	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.67	2	1	2	1	y	0.60	3	2	3	2	y	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	ENSMUSG00000039850.17	Endov	chr11	protein_coding	endonuclease V
novel_NIR_2721	chr11	119395993	119396313	+	119395993	119396414	A3SS	ENSMUST00000064513.9	novel	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.12	1	7	1	7	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.22	2	7	2	7	y	0.10	1	9	1	9	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.25	2	6	2	6	y	0.50	1	1	1	1	n	0.17	1	5	1	5	n	ENSMUSG00000039850.17	Endov	chr11	protein_coding	endonuclease V
novel_NIR_2722	chr11	119395993	119396313	+	119395993	119398028	A3SS	ENSMUST00000106244.9	novel	0.00	0	22	0	22	n	0.05	1	18	1	18	n	0.07	1	14	1	14	n	0.00	0	14	0	14	n	0.09	2	21	2	21	n	0.18	2	9	2	9	y	0.06	1	17	1	17	n	0.00	0	16	0	16	n	0.00	0	14	0	14	n	0.14	2	12	2	12	n	0.08	1	11	1	11	n	0.06	1	17	1	17	n	ENSMUSG00000039850.17	Endov	chr11	protein_coding	endonuclease V
novel_NIR_2723	chr11	119395993	119398035	+	119395993	119396414	3pMXE	ENSMUST00000064513.9	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.25	2	6	2	6	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	ENSMUSG00000039850.17	Endov	chr11	protein_coding	endonuclease V
novel_NIR_2724	chr11	119827356	119829988	-	119826875	119829988	A3SS	ENSMUST00000129379.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000085207.2	Gm11767	chr11	lncRNA	predicted gene 11767
novel_NIR_2725	chr11	119848715	119850983	+	119850891	119850983	5pMXE	ENSMUST00000146960.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000025372.17	Baiap2	chr11	protein_coding	brain-specific angiogenesis inhibitor 1-associated protein 2
novel_NIR_2726	chr11	119892004	119893864	+	119891412	119893864	A5SS	ENSMUST00000106233.2	novel	0.00	0	35	0	35	n	0.14	5	31	5	31	n	0.00	0	15	0	15	n	0.09	2	21	2	21	n	0.00	0	51	0	51	n	0.09	1	10	1	10	n	0.00	0	40	0	40	n	0.15	3	17	3	17	y	0.05	1	21	1	21	n	0.03	1	31	1	31	n	0.00	0	30	0	30	n	0.00	0	22	0	22	n	ENSMUSG00000025372.17	Baiap2	chr11	protein_coding	brain-specific angiogenesis inhibitor 1-associated protein 2
novel_NIR_2727	chr11	119963793	119963954	-	119963802	119963954	A3SS	ENSMUST00000106227.8	novel	0.00	0	13	0	13	n	0.11	1	8	1	8	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.07	1	13	1	13	n	0.25	3	9	3	9	y	0.12	2	15	2	15	n	ENSMUSG00000039781.15	Cep131	chr11	protein_coding	centrosomal protein 131
novel_NIR_2728	chr11	119997433	119999293	-	119997436	119999293	A3SS	ENSMUST00000103018.11	novel	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.46	6	7	6	7	y	0.00	0	8	0	8	n	0.31	4	9	4	9	y	0.08	1	12	1	12	n	0.11	1	8	1	8	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	ENSMUSG00000061306.17	Slc38a10	chr11	protein_coding	solute carrier family 38, member 10
novel_NIR_2729	chr11	119997436	120000892	-	119997436	119999293	5pMXE	ENSMUST00000148503.8	novel	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.84	38	7	38	7	y	0.27	3	8	3	8	y	0.73	24	9	24	9	y	0.60	18	12	18	12	y	0.56	10	8	10	8	y	0.69	20	9	20	9	y	0.60	3	2	3	2	y	0.71	10	4	10	4	y	0.52	11	10	11	10	y	0.39	7	11	7	11	y	ENSMUSG00000061306.17	Slc38a10	chr11	protein_coding	solute carrier family 38, member 10
novel_NIR_2730	chr11	120007847	120023503	-	120007847	120031419	A5SS	ENSMUST00000154444.9	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000061306.17	Slc38a10	chr11	protein_coding	solute carrier family 38, member 10
novel_NIR_2731	chr11	120009974	120019249	-	120009970	120019249	A3SS	ENSMUST00000076697.13	novel	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.25	2	6	2	6	y	0.00	0	1	0	1	n	0.09	1	10	1	10	n	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.11	1	8	1	8	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	ENSMUSG00000061306.17	Slc38a10	chr11	protein_coding	solute carrier family 38, member 10
novel_NIR_2732	chr11	120009974	120019249	-	120015217	120019249	3pMXE	ENSMUST00000053692.9	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.40	2	3	2	3	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061306.17	Slc38a10	chr11	protein_coding	solute carrier family 38, member 10
novel_NIR_2733	chr11	120079498	120080266	-	120079502	120080266	A3SS	ENSMUST00000145437.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.29	2	5	2	5	y	0.00	0	2	0	2	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000075389.4	2810410L24Rik	chr11	lncRNA	RIKEN cDNA 2810410L24 gene
novel_NIR_2734	chr11	120126696	120126845	-	120126487	120126845	A3SS	ENSMUST00000136542.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000085501.2	Gm11772	chr11	lncRNA	predicted gene 11772
novel_NIR_2735	chr11	120175626	120175738	+	120175653	120175738	A5SS	ENSMUST00000122148.8	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.07	1	14	1	14	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.29	2	5	2	5	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000039741.16	Bahcc1	chr11	protein_coding	BAH domain and coiled-coil containing 1
novel_NIR_2736	chr11	120239688	120241586	+	120239688	120241583	A3SS	ENSMUST00000143813.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.67	2	1	2	1	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000043644.5	0610009L18Rik	chr11	lncRNA	RIKEN cDNA 0610009L18 gene
novel_NIR_2737	chr11	120347988	120348610	-	120347988	120348669	A5SS	ENSMUST00000137632.2	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	ENSMUSG00000039670.3	Oxld1	chr11	protein_coding	oxidoreductase like domain containing 1
novel_NIR_2738	chr11	120382893	120383217	-	120382893	120383112	A5SS	ENSMUST00000142520.2	novel	1.00	11	0	11	0	y	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	15	0	15	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	2	0	2	n	1.00	8	0	8	0	y	0.85	11	2	11	2	y	0.00	0	3	0	3	n	0.64	7	4	7	4	y	ENSMUSG00000086929.2	Gm11788	chr11	lncRNA	predicted gene 11788
novel_NIR_2739	chr11	120382893	120384001	-	120382893	120383112	5pMXE	ENSMUST00000142520.2	novel	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.55	6	5	6	5	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000086929.2	Gm11788	chr11	lncRNA	predicted gene 11788
novel_NIR_2740	chr11	120382893	120384332	-	120382893	120383112	5pMXE	ENSMUST00000142520.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000086929.2	Gm11788	chr11	lncRNA	predicted gene 11788
novel_NIR_2741	chr11	120418029	120418127	-	120418029	120422259	A5SS	ENSMUST00000148579.2	novel	0.37	7	12	7	12	y	0.07	1	14	1	14	n	0.00	0	10	0	10	n	0.25	4	12	4	12	y	0.15	2	11	2	11	y	0.00	0	5	0	5	n	0.00	0	24	0	24	n	0.00	0	7	0	7	n	0.25	3	9	3	9	y	0.36	8	14	8	14	y	0.26	6	17	6	17	y	0.17	5	25	5	25	y	ENSMUSG00000084983.8	Gm11789	chr11	lncRNA	predicted gene 11789
novel_NIR_2742	chr11	120418029	120419838	-	120418029	120422259	A5SS	ENSMUST00000148579.2	novel	0.08	1	12	1	12	n	0.12	2	14	2	14	n	0.00	0	10	0	10	n	0.20	3	12	3	12	y	0.35	6	11	6	11	y	0.17	1	5	1	5	n	0.08	2	24	2	24	n	0.12	1	7	1	7	n	0.18	2	9	2	9	y	0.36	8	14	8	14	y	0.00	0	17	0	17	n	0.00	0	25	0	25	n	ENSMUSG00000084983.8	Gm11789	chr11	lncRNA	predicted gene 11789
novel_NIR_2743	chr11	120418029	120419838	-	120419462	120419838	3pMXE	ENSMUST00000140645.2	novel	0.06	1	16	1	16	n	0.07	2	27	2	27	n	0.00	0	4	0	4	n	0.10	3	28	3	28	n	0.16	6	32	6	32	y	0.17	1	5	1	5	n	0.06	2	33	2	33	n	0.12	1	7	1	7	n	0.10	2	19	2	19	n	0.14	8	49	8	49	n	0.00	0	36	0	36	n	0.00	0	41	0	41	n	ENSMUSG00000084983.8	Gm11789	chr11	lncRNA	predicted gene 11789
novel_NIR_2744	chr11	120418029	120421061	-	120418029	120422259	A5SS	ENSMUST00000148579.2	novel	0.29	5	12	5	12	y	0.07	1	14	1	14	n	0.17	2	10	2	10	y	0.40	8	12	8	12	y	0.31	5	11	5	11	y	0.29	2	5	2	5	y	0.00	0	24	0	24	n	0.46	6	7	6	7	y	0.25	3	9	3	9	y	0.48	13	14	13	14	y	0.32	8	17	8	17	y	0.17	5	25	5	25	y	ENSMUSG00000084983.8	Gm11789	chr11	lncRNA	predicted gene 11789
novel_NIR_2745	chr11	120419462	120421167	-	120418029	120421167	A3SS	ENSMUST00000140989.2	novel	0.06	14	238	14	238	n	0.09	19	202	19	202	n	0.01	1	102	1	102	n	0.07	15	185	15	185	n	0.12	39	286	39	286	n	0.05	6	108	6	108	n	0.08	23	265	23	265	n	0.07	8	102	8	102	n	0.07	12	161	12	161	n	0.18	51	234	51	234	y	0.06	12	205	12	205	n	0.13	26	175	26	175	n	ENSMUSG00000084983.8	Gm11789	chr11	lncRNA	predicted gene 11789
novel_NIR_2746	chr11	120419462	120421167	-	120419462;120419985	120419838;120421167	ES	ENSMUST00000140645.2	novel	0.32	14	29.5	14	16;43	y	0.34	19	36.5	19	27;46	y	0.11	1	8.5	1	4;13	n	0.31	15	34.0	15	28;40	y	0.53	39	34.0	39	32;36	y	0.52	6	5.5	6	5;6	y	0.34	23	44.5	23	33;56	y	0.32	8	17.0	8	7;27	y	0.30	12	28.0	12	19;37	y	0.52	51	47.5	51	49;46	y	0.20	12	47.5	12	36;59	y	0.38	26	43.0	26	41;45	y	ENSMUSG00000084983.8	Gm11789	chr11	lncRNA	predicted gene 11789
novel_NIR_2747	chr11	120425844	120426888	+	120425844	120426845	A3SS	ENSMUST00000143063.2	novel	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	17	0	17	n	0.00	0	17	0	17	n	0.00	0	12	0	12	n	0.27	6	16	6	16	y	ENSMUSG00000025127.16	Gcgr	chr11	protein_coding	glucagon receptor
novel_NIR_2748	chr11	120425844	120426902	+	120425844	120426845	A3SS	ENSMUST00000143063.2	novel	0.12	2	14	2	14	n	0.41	9	13	9	13	y	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.31	5	11	5	11	y	0.00	0	5	0	5	n	0.37	7	12	7	12	y	0.43	3	4	3	4	y	0.19	4	17	4	17	y	0.00	0	17	0	17	n	0.25	4	12	4	12	y	0.11	2	16	2	16	n	ENSMUSG00000025127.16	Gcgr	chr11	protein_coding	glucagon receptor
novel_NIR_2749	chr11	120427192	120427544	+	120427192	120427288	A3SS&ES	ENSMUST00000026119.8	novel	0.11	35	298	35	298	n	0.18	64	285	64	285	y	0.09	15	149	15	149	n	0.10	40	350	40	350	n	0.10	52	473	52	473	n	0.18	21	95	21	95	y	0.11	56	434	56	434	n	0.07	10	143	10	143	n	0.10	36	330	36	330	n	0.08	42	477	42	477	n	0.09	34	350	34	350	n	0.08	35	395	35	395	n	ENSMUSG00000025127.16	Gcgr	chr11	protein_coding	glucagon receptor
novel_NIR_2750	chr11	120471219	120471892	-	120471219	120471816	A5SS	ENSMUST00000067936.6	novel	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.33	2	4	2	4	y	0.08	1	11	1	11	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.20	1	4	1	4	n	ENSMUSG00000025132.14	Arhgdia	chr11	protein_coding	Rho GDP dissociation inhibitor (GDI) alpha
novel_NIR_2751	chr11	120504603	120505157	-	120504600	120505157	A3SS	ENSMUST00000126723.8	novel	0.36	5	9	5	9	y	0.12	2	14	2	14	n	0.00	0	10	0	10	n	0.27	4	11	4	11	y	0.10	3	26	3	26	n	0.00	0	11	0	11	n	0.24	4	13	4	13	y	0.10	1	9	1	9	n	1.00	1	0	1	0	n	0.18	6	28	6	28	y	0.04	1	24	1	24	n	0.00	0	26	0	26	n	ENSMUSG00000025137.16	Pcyt2	chr11	protein_coding	phosphate cytidylyltransferase 2, ethanolamine
novel_NIR_2752	chr11	120510834	120510989	-	120510593	120510989	A3SS	ENSMUST00000134255.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025138.15	Sirt7	chr11	protein_coding	sirtuin 7
novel_NIR_2753	chr11	120520707	120520807	-	120520707	120520812	A5SS	ENSMUST00000106181.8	novel	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.25	2	6	2	6	y	0.00	0	2	0	2	n	0.11	1	8	1	8	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000051510.14	Mafg	chr11	protein_coding	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)
novel_NIR_2754	chr11	120520707	120520807	-	120520707	120524188	A5SS	ENSMUST00000058162.14	novel	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.22	2	7	2	7	y	0.00	0	3	0	3	n	0.14	1	6	1	6	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	ENSMUSG00000051510.14	Mafg	chr11	protein_coding	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)
novel_NIR_2755	chr11	120520707	120523923	-	120520707	120520812	5pMXE	ENSMUST00000106180.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.80	4	1	4	1	y	0.00	0	1	0	1	n	0.14	1	6	1	6	n	0.00	0	2	0	2	n	0.11	1	8	1	8	n	0.17	1	5	1	5	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	ENSMUSG00000051510.14	Mafg	chr11	protein_coding	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)
novel_NIR_2756	chr11	120520707	120523923	-	120520707	120524188	A5SS	ENSMUST00000058162.14	novel	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.08	1	11	1	11	n	0.22	4	14	4	14	y	0.00	0	6	0	6	n	0.12	1	7	1	7	n	0.00	0	3	0	3	n	0.14	1	6	1	6	n	0.10	1	9	1	9	n	0.14	1	6	1	6	n	0.00	0	15	0	15	n	ENSMUSG00000051510.14	Mafg	chr11	protein_coding	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)
novel_NIR_2757	chr11	120520964	120521314	-	120520842	120521314	A3SS	ENSMUST00000106181.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000051510.14	Mafg	chr11	protein_coding	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)
novel_NIR_2758	chr11	120522266	120523923	-	120522266	120524188	A5SS	ENSMUST00000128498.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000051510.14	Mafg	chr11	protein_coding	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)
novel_NIR_2759	chr11	120547498	120548319	-	120547577	120548319	A3SS	ENSMUST00000106177.8	novel	0.08	3	33	3	33	n	0.11	4	33	4	33	n	-	-	-	-	-	-	0.17	7	35	7	35	y	0.05	2	35	2	35	n	0.00	0	2	0	2	n	0.00	0	38	0	38	n	0.00	0	3	0	3	n	0.00	0	30	0	30	n	0.00	0	73	0	73	n	0.17	7	34	7	34	y	0.09	5	53	5	53	n	ENSMUSG00000042988.11	Notum	chr11	protein_coding	notum palmitoleoyl-protein carboxylesterase
novel_NIR_2760	chr11	120549703	120551153	-	120549703	120550821	A5SS	ENSMUST00000106177.8	novel	0.00	0	31	0	31	n	0.00	0	24	0	24	n	0.00	0	5	0	5	n	0.02	1	42	1	42	n	0.04	1	27	1	27	n	0.00	0	2	0	2	n	0.00	0	38	0	38	n	0.30	3	7	3	7	y	0.00	0	42	0	42	n	0.00	0	32	0	32	n	0.00	0	31	0	31	n	0.03	2	57	2	57	n	ENSMUSG00000042988.11	Notum	chr11	protein_coding	notum palmitoleoyl-protein carboxylesterase
novel_NIR_2761	chr11	120564428	120564866	+	120563969	120564866	A5SS	ENSMUST00000171700.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	7	0	7	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	1.00	2	0	2	0	y	ENSMUSG00000025142.19	Aspscr1	chr11	protein_coding	alveolar soft part sarcoma chromosome region, candidate 1 (human)
novel_NIR_2762	chr11	120564428	120564866	+	120564233	120564866	A5SS	ENSMUST00000131727.9	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	ENSMUSG00000025142.19	Aspscr1	chr11	protein_coding	alveolar soft part sarcoma chromosome region, candidate 1 (human)
novel_NIR_2763	chr11	120564428	120564866	+	120564388	120564866	A5SS	ENSMUST00000153346.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000025142.19	Aspscr1	chr11	protein_coding	alveolar soft part sarcoma chromosome region, candidate 1 (human)
novel_NIR_2764	chr11	120564428	120564866	+	120564402	120564866	A5SS	ENSMUST00000127269.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000025142.19	Aspscr1	chr11	protein_coding	alveolar soft part sarcoma chromosome region, candidate 1 (human)
novel_NIR_2765	chr11	120564627	120564841	+	120564627	120564866	A3SS	ENSMUST00000149389.8	novel	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	15	0	15	n	0.00	0	11	0	11	n	0.06	1	16	1	16	n	0.25	1	3	1	3	n	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.17	2	10	2	10	y	0.00	0	19	0	19	n	0.00	0	7	0	7	n	0.00	0	16	0	16	n	ENSMUSG00000025142.19	Aspscr1	chr11	protein_coding	alveolar soft part sarcoma chromosome region, candidate 1 (human)
novel_NIR_2766	chr11	120564787	120564866	+	120563969	120564866	A5SS	ENSMUST00000171700.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.60	3	2	3	2	y	0.00	0	7	0	7	n	-	-	-	-	-	-	1.00	10	0	10	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.70	7	3	7	3	y	0.00	0	4	0	4	n	1.00	1	0	1	0	n	ENSMUSG00000025142.19	Aspscr1	chr11	protein_coding	alveolar soft part sarcoma chromosome region, candidate 1 (human)
novel_NIR_2767	chr11	120564787	120564866	+	120564233	120564866	A5SS	ENSMUST00000131727.9	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.75	3	1	3	1	y	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	10	0	10	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	7	0	7	0	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	ENSMUSG00000025142.19	Aspscr1	chr11	protein_coding	alveolar soft part sarcoma chromosome region, candidate 1 (human)
novel_NIR_2768	chr11	120564787	120564866	+	120564388	120564866	A5SS	ENSMUST00000153346.8	novel	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.83	10	2	10	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000025142.19	Aspscr1	chr11	protein_coding	alveolar soft part sarcoma chromosome region, candidate 1 (human)
novel_NIR_2769	chr11	120564787	120564866	+	120564402	120564866	A5SS	ENSMUST00000127269.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	10	0	10	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000025142.19	Aspscr1	chr11	protein_coding	alveolar soft part sarcoma chromosome region, candidate 1 (human)
novel_NIR_2770	chr11	120564787	120564866	+	120564440	120564866	A5SS	ENSMUST00000135346.8	novel	0.02	1	42	1	42	n	0.00	0	19	0	19	n	0.00	0	42	0	42	n	0.07	3	37	3	37	n	0.00	0	39	0	39	n	0.00	0	22	0	22	n	0.17	10	48	10	48	y	0.00	0	20	0	20	n	0.00	0	25	0	25	n	0.14	7	43	7	43	n	0.00	0	25	0	25	n	0.03	1	29	1	29	n	ENSMUSG00000025142.19	Aspscr1	chr11	protein_coding	alveolar soft part sarcoma chromosome region, candidate 1 (human)
novel_NIR_2771	chr11	120564787	120564866	+	120564627	120564866	A5SS	ENSMUST00000149389.8	novel	0.07	1	13	1	13	n	0.00	0	5	0	5	n	0.00	0	15	0	15	n	0.21	3	11	3	11	y	0.00	0	16	0	16	n	0.00	0	3	0	3	n	0.38	10	16	10	16	y	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.27	7	19	7	19	y	0.00	0	7	0	7	n	0.06	1	16	1	16	n	ENSMUSG00000025142.19	Aspscr1	chr11	protein_coding	alveolar soft part sarcoma chromosome region, candidate 1 (human)
novel_NIR_2772	chr11	120577527	120591970	+	120577527	120599484	A3SS	ENSMUST00000168714.9	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025142.19	Aspscr1	chr11	protein_coding	alveolar soft part sarcoma chromosome region, candidate 1 (human)
novel_NIR_2773	chr11	120580167	120591950	+	120569346	120591950	A5SS	ENSMUST00000168097.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000025142.19	Aspscr1	chr11	protein_coding	alveolar soft part sarcoma chromosome region, candidate 1 (human)
novel_NIR_2774	chr11	120599535	120599740	+	120599535	120599897	A3SS	ENSMUST00000167678.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000025142.19	Aspscr1	chr11	protein_coding	alveolar soft part sarcoma chromosome region, candidate 1 (human)
novel_NIR_2775	chr11	120602302	120602529	-	120602327	120602529	A3SS	ENSMUST00000128543.2	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.60	3	2	3	2	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.60	3	2	3	2	y	1.00	4	0	4	0	y	0.14	1	6	1	6	n	ENSMUSG00000025144.18	Cenpx	chr11	protein_coding	centromere protein X
novel_NIR_2776	chr11	120602721	120604356	-	120602721	120603266	A5SS&ES	ENSMUST00000106154.8	novel	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	22	0	22	n	0.00	0	5	0	5	n	0.00	0	19	0	19	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.43	3	4	3	4	y	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	ENSMUSG00000025144.18	Cenpx	chr11	protein_coding	centromere protein X
novel_NIR_2777	chr11	120603454	120604519	-	120603365	120604519	A3SS	ENSMUST00000106155.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025144.18	Cenpx	chr11	protein_coding	centromere protein X
novel_NIR_2778	chr11	120603454	120604519	-	120603538	120604519	A3SS	ENSMUST00000106154.8	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.30	3	7	3	7	y	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.40	2	3	2	3	y	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	-	-	-	-	-	-	ENSMUSG00000025144.18	Cenpx	chr11	protein_coding	centromere protein X
novel_NIR_2779	chr11	120603538	120604356	-	120603538	120604519	A5SS	ENSMUST00000106154.8	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.10	1	9	1	9	n	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	1.00	2	0	2	0	y	ENSMUSG00000025144.18	Cenpx	chr11	protein_coding	centromere protein X
novel_NIR_2780	chr11	120608364	120608467	+	120608364	120608651	A3SS	ENSMUST00000026139.14	novel	0.14	3	18	3	18	n	0.00	0	8	0	8	n	0.08	1	12	1	12	n	0.00	0	24	0	24	n	0.08	2	23	2	23	n	0.15	2	11	2	11	y	0.00	0	28	0	28	n	0.10	2	19	2	19	n	0.19	3	13	3	13	y	0.04	1	24	1	24	n	0.00	0	19	0	19	n	0.12	3	22	3	22	n	ENSMUSG00000025145.14	Lrrc45	chr11	protein_coding	leucine rich repeat containing 45
novel_NIR_2781	chr11	120682755	120682853	-	120682786	120682853	A3SS	ENSMUST00000106135.8	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025155.16	Dus1l	chr11	protein_coding	dihydrouridine synthase 1-like (S. cerevisiae)
novel_NIR_2782	chr11	120686549	120686758	-	120686549	120686969	A5SS	ENSMUST00000026151.11	novel	0.00	0	7	0	7	n	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.30	3	7	3	7	y	0.29	2	5	2	5	y	0.11	1	8	1	8	n	0.17	1	5	1	5	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	ENSMUSG00000025155.16	Dus1l	chr11	protein_coding	dihydrouridine synthase 1-like (S. cerevisiae)
novel_NIR_2783	chr11	120686549	120686758	-	120686549	120687136	A5SS	ENSMUST00000106133.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000025155.16	Dus1l	chr11	protein_coding	dihydrouridine synthase 1-like (S. cerevisiae)
novel_NIR_2784	chr11	120686549	120691142	-	120686549	120686969	5pMXE	ENSMUST00000026151.11	novel	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.12	1	7	1	7	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.17	1	5	1	5	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	ENSMUSG00000025155.16	Dus1l	chr11	protein_coding	dihydrouridine synthase 1-like (S. cerevisiae)
novel_NIR_2785	chr11	120686549	120691142	-	120686549	120687136	5pMXE	ENSMUST00000106133.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000025155.16	Dus1l	chr11	protein_coding	dihydrouridine synthase 1-like (S. cerevisiae)
novel_NIR_2786	chr11	120717750	120743381	-	120717750	120751227	A5SS	ENSMUST00000056781.5	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	ENSMUSG00000048445.7	Ccdc57	chr11	protein_coding	coiled-coil domain containing 57
novel_NIR_2787	chr11	120752150	120757381	-	120752095	120757381	A3SS	ENSMUST00000056781.5	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.20	2	8	2	8	y	0.00	0	6	0	6	n	0.00	0	5	0	5	n	ENSMUSG00000048445.7	Ccdc57	chr11	protein_coding	coiled-coil domain containing 57
novel_NIR_2788	chr11	120769874	120776059	-	120769874;120772741	120772641;120776059	ES	ENSMUST00000056781.5	novel	0.67	2	1.0	2	0;2	y	0.00	0	1.5	0	0;3	n	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	0.00	0	2.0	0	0;4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	0.5	0	0;1	n	0.00	0	3.5	0	3;4	n	0.00	0	4.5	0	3;6	n	0.00	0	2.0	0	0;4	n	0.00	0	4.0	0	0;8	n	ENSMUSG00000048445.7	Ccdc57	chr11	protein_coding	coiled-coil domain containing 57
novel_NIR_2789	chr11	120855831	120858821	-	120850121	120858821	A3SS	ENSMUST00000239115.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.17	1	5	1	5	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.43	3	4	3	4	y	0.00	0	1	0	1	n	ENSMUSG00000025162.19	Csnk1d	chr11	protein_coding	casein kinase 1, delta
novel_NIR_2790	chr11	120855831	120858821	-	120858562	120858821	3pMXE	ENSMUST00000139267.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000025162.19	Csnk1d	chr11	protein_coding	casein kinase 1, delta
novel_NIR_2791	chr11	120855836	120858914	-	120855836	120856410	5pMXE	ENSMUST00000131375.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025162.19	Csnk1d	chr11	protein_coding	casein kinase 1, delta
novel_NIR_2792	chr11	120966547	120977218	-	120966547	120971909	5pMXE	ENSMUST00000106119.9	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025165.13	Sectm1a	chr11	protein_coding	secreted and transmembrane 1A
novel_NIR_2793	chr11	121098189	121098465	+	121095668	121098465	A5SS	ENSMUST00000038831.15	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.80	4	1	4	1	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	ENSMUSG00000039307.17	Hexdc	chr11	protein_coding	hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing
novel_NIR_2794	chr11	121098189	121098465	+	121095805	121098465	A5SS	ENSMUST00000131009.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.80	4	1	4	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039307.17	Hexdc	chr11	protein_coding	hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing
novel_NIR_2795	chr11	121098189	121098465	+	121097574	121098465	A5SS	ENSMUST00000124925.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	4	2	4	2	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000039307.17	Hexdc	chr11	protein_coding	hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing
novel_NIR_2796	chr11	121098189	121098465	+	121097600	121098465	A5SS	ENSMUST00000124768.8	novel	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.80	4	1	4	1	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000039307.17	Hexdc	chr11	protein_coding	hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing
novel_NIR_2797	chr11	121111987	121112119	+	121111987	121112062	A3SS	ENSMUST00000038831.15	novel	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	19	0	19	n	0.11	1	8	1	8	n	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.06	1	15	1	15	n	0.00	0	18	0	18	n	0.17	2	10	2	10	y	0.00	0	9	0	9	n	ENSMUSG00000039307.17	Hexdc	chr11	protein_coding	hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing
novel_NIR_2798	chr11	121111987	121112134	+	121111987	121112062	A3SS	ENSMUST00000038831.15	novel	0.07	1	14	1	14	n	0.15	3	17	3	17	y	0.00	0	9	0	9	n	0.17	2	10	2	10	y	0.00	0	19	0	19	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.00	0	15	0	15	n	0.05	1	18	1	18	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	ENSMUSG00000039307.17	Hexdc	chr11	protein_coding	hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing
novel_NIR_2799	chr11	121111987	121112327	+	121111987;121112163	121112062;121112327	ES	ENSMUST00000038831.15	novel	0.00	0	17.5	0	14;21	n	0.00	0	17.5	0	17;18	n	0.32	6	12.5	6	9;16	y	0.00	0	10.5	0	10;11	n	0.14	3	19.0	3	19;19	n	0.00	0	8.0	0	8;8	n	0.00	0	17.5	0	13;22	n	0.00	0	5.0	0	3;7	n	0.00	0	11.5	0	15;8	n	0.00	0	24.0	0	18;30	n	0.18	3	13.5	3	10;17	y	0.38	6	10.0	6	9;11	y	ENSMUSG00000039307.17	Hexdc	chr11	protein_coding	hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing
novel_NIR_2800	chr11	121151348	121153152	+	121151348	121176248	A3SS	ENSMUST00000106113.2	novel	0.00	0	13	0	13	n	0.33	1	2	1	2	n	0.26	9	25	9	25	y	0.00	0	8	0	8	n	0.07	2	28	2	28	n	0.23	3	10	3	10	y	0.00	0	14	0	14	n	0.07	1	13	1	13	n	0.00	0	7	0	7	n	0.19	3	13	3	13	y	0.10	1	9	1	9	n	0.00	0	15	0	15	n	ENSMUSG00000039275.10	Foxk2	chr11	protein_coding	forkhead box K2
novel_NIR_2801	chr11	121151348	121157682	+	121151348	121176248	A3SS	ENSMUST00000106113.2	novel	0.28	5	13	5	13	n	0.33	1	2	1	2	n	0.22	7	25	7	25	n	0.27	3	8	3	8	n	0.20	7	28	7	28	n	0.23	3	10	3	10	n	0.07	1	14	1	14	n	0.13	2	13	2	13	n	0.12	1	7	1	7	n	0.28	5	13	5	13	n	0.18	2	9	2	9	y	0.12	2	15	2	15	n	ENSMUSG00000039275.10	Foxk2	chr11	protein_coding	forkhead box K2
novel_NIR_2802	chr11	121151348;121157798	121157682;121176248	+	121151348	121176248	cassetteExon	ENSMUST00000106113.2	novel	0.28	5.0	13	5;5	13	y	0.20	0.5	2	1;0	2	n	0.25	8.5	25	7;10	25	y	0.33	4.0	8	3;5	8	y	0.22	8.0	28	7;9	28	y	0.17	2.0	10	3;1	10	n	0.24	4.5	14	1;8	14	n	0.19	3.0	13	2;4	13	y	0.07	0.5	7	1;0	7	n	0.28	5.0	13	5;5	13	y	0.10	1.0	9	2;0	9	n	0.06	1.0	15	2;0	15	n	ENSMUSG00000039275.10	Foxk2	chr11	protein_coding	forkhead box K2
novel_NIR_2803	chr11	121181716	121185638	+	121181716	121186855	A3SS	ENSMUST00000106113.2	novel	0.12	3	22	3	22	n	0.00	0	15	0	15	n	0.00	0	39	0	39	n	0.08	2	24	2	24	n	0.05	2	39	2	39	n	0.00	0	22	0	22	n	0.10	3	26	3	26	n	0.00	0	19	0	19	n	0.15	2	11	2	11	y	0.00	0	28	0	28	n	0.15	2	11	2	11	y	0.05	1	19	1	19	n	ENSMUSG00000039275.10	Foxk2	chr11	protein_coding	forkhead box K2
novel_NIR_2804	chr11	121181716	121185638	+	121181716	121187049	A3SS	ENSMUST00000153579.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.67	2	1	2	1	n	0.00	0	1	0	1	n	0.60	3	2	3	2	y	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000039275.10	Foxk2	chr11	protein_coding	forkhead box K2
novel_NIR_2805	chr11	121181716	121187740	+	121181716;121187177	121187049;121187740	ES	ENSMUST00000153579.2	novel	0.00	0	0.5	0	0;1	n	-	-	-	-	-	-	0.25	1	3.0	1	3;3	n	0.67	1	0.5	1	0;1	n	0.00	0	0.5	0	1;0	n	0.00	0	1.0	0	1;1	n	0.00	0	2.0	0	2;2	n	0.00	0	2.0	0	2;2	n	1.00	1	0.0	1	0;0	n	1.00	3	0.0	3	0;0	y	-	-	-	-	-	-	0.50	1	1.0	1	0;2	n	ENSMUSG00000039275.10	Foxk2	chr11	protein_coding	forkhead box K2
novel_NIR_2806	chr11	121189681	121197594	+	121189681	121190410	3pMXE	ENSMUST00000151492.2	novel	0.24	4	13	4	13	y	0.27	3	8	3	8	y	0.24	12	37	12	37	y	0.19	4	17	4	17	y	0.37	15	26	15	26	y	0.26	6	17	6	17	y	0.30	7	16	7	16	y	0.48	10	11	10	11	y	0.31	4	9	4	9	y	0.37	16	27	16	27	y	0.29	4	10	4	10	y	0.32	6	13	6	13	y	ENSMUSG00000039275.10	Foxk2	chr11	protein_coding	forkhead box K2
novel_NIR_2807	chr11	121189681	121197594	+	121189681;121190619	121190410;121197594	ES	ENSMUST00000106113.2	novel	0.23	4	13.5	4	13;14	y	0.29	3	7.5	3	8;7	y	0.30	12	27.5	12	37;18	y	0.22	4	14.0	4	17;11	y	0.34	15	28.5	15	26;31	y	0.33	6	12.0	6	17;7	y	0.26	7	19.5	7	16;23	y	0.57	10	7.5	10	11;4	y	0.33	4	8.0	4	9;7	y	0.42	16	22.0	16	27;17	y	0.30	4	9.5	4	10;9	y	0.33	6	12.0	6	13;11	y	ENSMUSG00000039275.10	Foxk2	chr11	protein_coding	forkhead box K2
novel_NIR_2808	chr11	121189681	121197597	+	121189681	121190410	A3SS&ES	ENSMUST00000106113.2	novel	0.13	2	13	2	13	n	0.00	0	8	0	8	n	0.07	3	37	3	37	n	0.11	2	17	2	17	n	0.21	7	26	7	26	y	0.19	4	17	4	17	y	0.24	5	16	5	16	y	0.21	3	11	3	11	y	0.31	4	9	4	9	y	0.10	3	27	3	27	n	0.09	1	10	1	10	n	0.19	3	13	3	13	y	ENSMUSG00000039275.10	Foxk2	chr11	protein_coding	forkhead box K2
novel_NIR_2809	chr11	121190619	121197597	+	121190619	121197594	A3SS	ENSMUST00000106113.2	novel	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.10	2	18	2	18	n	0.00	0	11	0	11	n	0.14	5	31	5	31	n	0.00	0	7	0	7	n	0.00	0	23	0	23	n	0.33	2	4	2	4	y	0.00	0	7	0	7	n	0.00	0	17	0	17	n	0.25	3	9	3	9	y	0.00	0	11	0	11	n	ENSMUSG00000039275.10	Foxk2	chr11	protein_coding	forkhead box K2
novel_NIR_2810	chr11	121190619	121210840	+	121190619	121197594	3pMXE	ENSMUST00000106113.2	novel	0.12	2	14	2	14	n	0.00	0	7	0	7	n	0.00	0	18	0	18	n	0.08	1	11	1	11	n	0.03	1	31	1	31	n	0.30	3	7	3	7	y	0.00	0	23	0	23	n	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	ENSMUSG00000039275.10	Foxk2	chr11	protein_coding	forkhead box K2
novel_NIR_2811	chr11	121221024	121226210	-	121221954	121226210	3pMXE	ENSMUST00000106110.10	novel	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	12	0	12	0	y	0.00	0	2	0	2	n	0.67	6	3	6	3	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	ENSMUSG00000025173.14	Wdr45b	chr11	protein_coding	WD repeat domain 45B
novel_NIR_2812	chr11	121253717	121254330	-	121250446	121254330	A3SS	ENSMUST00000106107.3	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000025170.14	Rab40b	chr11	protein_coding	Rab40B, member RAS oncogene family
novel_NIR_2813	chr11	121330979	121331510	+	121330979	121332495	A3SS	ENSMUST00000092302.11	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000025175.13	Fn3k	chr11	protein_coding	fructosamine 3 kinase
novel_NIR_2814	chr11	121330979	121331578	+	121330979	121332495	A3SS	ENSMUST00000092302.11	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025175.13	Fn3k	chr11	protein_coding	fructosamine 3 kinase
novel_NIR_2815	chr11	121394613	121394786	+	121394613	121408937	A3SS	ENSMUST00000125167.8	novel	1.00	3	0	3	0	y	0.78	7	2	7	2	y	1.00	8	0	8	0	y	1.00	2	0	2	0	y	1.00	8	0	8	0	y	1.00	7	0	7	0	y	1.00	2	0	2	0	y	1.00	8	0	8	0	y	1.00	4	0	4	0	y	1.00	9	0	9	0	y	1.00	7	0	7	0	y	1.00	3	0	3	0	y	ENSMUSG00000039230.15	Tbcd	chr11	protein_coding	tubulin-specific chaperone d
novel_NIR_2816	chr11	121394613	121394786	+	121394613	121431678	A3SS	ENSMUST00000103013.10	novel	0.09	3	31	3	31	n	0.27	7	19	7	19	y	0.15	8	47	8	47	y	0.05	2	42	2	42	n	0.15	8	46	8	46	y	0.17	7	35	7	35	y	0.05	2	38	2	38	n	0.26	8	23	8	23	y	0.13	4	27	4	27	n	0.13	9	58	9	58	n	0.22	7	25	7	25	y	0.09	3	29	3	29	n	ENSMUSG00000039230.15	Tbcd	chr11	protein_coding	tubulin-specific chaperone d
novel_NIR_2817	chr11	121394613	121404865	+	121394613	121408937	A3SS	ENSMUST00000125167.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000039230.15	Tbcd	chr11	protein_coding	tubulin-specific chaperone d
novel_NIR_2818	chr11	121407768	121431678	+	121409167	121431678	A5SS&ES	ENSMUST00000125167.8	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.12	1	7	1	7	n	0.33	2	4	2	4	y	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	ENSMUSG00000039230.15	Tbcd	chr11	protein_coding	tubulin-specific chaperone d
novel_NIR_2819	chr11	121508681	121510461	-	121508678	121510461	A3SS	ENSMUST00000067399.14	novel	0.14	1	6	1	6	n	0.00	0	8	0	8	n	0.09	1	10	1	10	n	0.30	3	7	3	7	y	0.00	0	10	0	10	n	0.17	1	5	1	5	n	0.10	1	9	1	9	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	ENSMUSG00000046605.15	B3gntl1	chr11	protein_coding	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1
novel_NIR_2820	chr11	121535418	121561696	-	121535418;121542499	121542435;121561696	ES	ENSMUST00000067399.14	novel	0.00	0	2.0	0	3;1	n	0.33	2	4.0	2	6;2	y	0.12	1	7.0	1	7;7	n	0.29	2	5.0	2	4;6	y	0.11	1	8.5	1	11;6	n	0.00	0	5.5	0	7;4	n	0.31	2	4.5	2	4;5	y	0.00	0	1.0	0	1;1	n	0.40	1	1.5	1	2;1	n	0.00	0	3.0	0	4;2	n	0.00	0	2.5	0	3;2	n	0.00	0	4.5	0	5;4	n	ENSMUSG00000046605.15	B3gntl1	chr11	protein_coding	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1
novel_NIR_2821	chr11	121561999	121563807	-	121561999	121563811	A5SS	ENSMUST00000067399.14	novel	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.33	3	6	3	6	y	0.00	0	3	0	3	n	0.23	3	10	3	10	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	ENSMUSG00000046605.15	B3gntl1	chr11	protein_coding	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1
novel_NIR_2822	chr11	12201142	12203080	-	12201142	12203089	A5SS	ENSMUST00000109650.8	novel	0.22	11	39	11	39	y	0.31	10	22	10	22	y	0.21	44	164	44	164	y	0.25	18	53	18	53	y	0.26	25	72	25	72	y	0.26	17	49	17	49	y	0.18	14	65	14	65	y	0.35	22	41	22	41	y	0.24	10	32	10	32	y	0.21	9	33	9	33	y	0.19	4	17	4	17	y	0.16	8	42	8	42	y	ENSMUSG00000020173.18	Cobl	chr11	protein_coding	cordon-bleu WH2 repeat
novel_NIR_2823	chr11	16702570	16817231	+	16702570	16743640	3pMXE	ENSMUST00000139722.2	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.25	2	6	2	6	y	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000020122.17	Egfr	chr11	protein_coding	epidermal growth factor receptor
novel_NIR_2824	chr11	16833613	16839913	+	16833613	16834254	3pMXE	ENSMUST00000125984.2	novel	0.50	2	2	2	2	y	-	-	-	-	-	-	0.60	3	2	3	2	y	0.33	1	2	1	2	n	0.00	0	6	0	6	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000020122.17	Egfr	chr11	protein_coding	epidermal growth factor receptor
novel_NIR_2825	chr11	16924153	16958557	-	16924153	16931801	A5SS&ES	ENSMUST00000020321.13	novel	0.40	4	6	4	6	y	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000020120.16	Plek	chr11	protein_coding	pleckstrin
novel_NIR_2826	chr11	19914190	19948120	+	19874956	19948120	A5SS	ENSMUST00000093299.13	novel	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	ENSMUSG00000045671.18	Spred2	chr11	protein_coding	sprouty-related EVH1 domain containing 2
novel_NIR_2827	chr11	19914190	19948120	+	19904739	19948120	A5SS	ENSMUST00000123036.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045671.18	Spred2	chr11	protein_coding	sprouty-related EVH1 domain containing 2
novel_NIR_2828	chr11	20188588	20189096	-	20188588	20189196	A5SS	ENSMUST00000050611.14	novel	0.17	2	10	2	10	y	0.00	0	18	0	18	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.00	0	22	0	22	n	0.00	0	10	0	10	n	0.00	0	18	0	18	n	0.00	0	23	0	23	n	0.00	0	23	0	23	n	0.00	0	33	0	33	n	ENSMUSG00000044066.15	Cep68	chr11	protein_coding	centrosomal protein 68
novel_NIR_2829	chr11	20507058	20545130	+	20493760	20545130	A5SS	ENSMUST00000145328.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000049800.14	Sertad2	chr11	protein_coding	SERTA domain containing 2
novel_NIR_2830	chr11	20582935	20597802	+	20493760	20597802	A5SS	ENSMUST00000093292.11	novel	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000049800.14	Sertad2	chr11	protein_coding	SERTA domain containing 2
novel_NIR_2831	chr11	20582935	20597802	+	20582273	20597802	A5SS	ENSMUST00000109586.3	novel	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.00	0	17	0	17	n	0.00	0	8	0	8	n	0.00	0	21	0	21	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.22	2	7	2	7	y	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	ENSMUSG00000049800.14	Sertad2	chr11	protein_coding	SERTA domain containing 2
novel_NIR_2832	chr11	20582935	20597802	+	20597352	20597802	5pMXE	ENSMUST00000109585.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000049800.14	Sertad2	chr11	protein_coding	SERTA domain containing 2
novel_NIR_2833	chr11	20653833	20659620	-	20653833	20675685	A5SS	ENSMUST00000176782.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000049659.16	Aftph	chr11	protein_coding	aftiphilin
novel_NIR_2834	chr11	20662311	20675685	-	20653833	20675685	A3SS	ENSMUST00000176782.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000049659.16	Aftph	chr11	protein_coding	aftiphilin
novel_NIR_2835	chr11	20780347	20781449	-	20780347	20780870	5pMXE	ENSMUST00000154300.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000042363.15	Lgalsl	chr11	protein_coding	lectin, galactoside binding-like
novel_NIR_2836	chr11	20780347	20781449	-	20780347	20780974	5pMXE	ENSMUST00000047028.9	novel	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.25	2	6	2	6	y	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.00	0	21	0	21	n	0.00	0	14	0	14	n	0.00	0	18	0	18	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	ENSMUSG00000042363.15	Lgalsl	chr11	protein_coding	lectin, galactoside binding-like
novel_NIR_2837	chr11	21057167	21086046	+	21042369	21086046	A5SS	ENSMUST00000149675.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020134.14	Peli1	chr11	protein_coding	pellino 1
novel_NIR_2838	chr11	21085733	21086046	+	21041678	21086046	A5SS	ENSMUST00000156122.8	novel	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	27	0	27	n	0.00	0	21	0	21	n	0.00	0	33	0	33	n	0.00	0	12	0	12	n	0.16	3	16	3	16	y	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.00	0	21	0	21	n	0.00	0	12	0	12	n	0.00	0	27	0	27	n	ENSMUSG00000020134.14	Peli1	chr11	protein_coding	pellino 1
novel_NIR_2839	chr11	21085733	21086046	+	21042369	21086046	A5SS	ENSMUST00000149675.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020134.14	Peli1	chr11	protein_coding	pellino 1
novel_NIR_2840	chr11	21213287	21214666	+	21213354	21214666	A5SS	ENSMUST00000109578.8	novel	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.00	0	34	0	34	n	0.00	0	14	0	14	n	0.15	6	34	6	34	y	0.04	1	24	1	24	n	0.00	0	16	0	16	n	0.00	0	19	0	19	n	0.00	0	9	0	9	n	0.04	1	23	1	23	n	0.00	0	20	0	20	n	0.06	2	31	2	31	n	ENSMUSG00000020128.16	Vps54	chr11	protein_coding	VPS54 GARP complex subunit
novel_NIR_2841	chr11	21586542	21598070	+	21522370	21598070	A5SS	ENSMUST00000131135.3	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.75	3	1	3	1	y	ENSMUSG00000020319.10	Wdpcp	chr11	protein_coding	WD repeat containing planar cell polarity effector
novel_NIR_2842	chr11	21767024	21807447	+	21763462	21807447	A5SS	ENSMUST00000020568.10	novel	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.29	2	5	2	5	y	0.00	0	4	0	4	n	0.29	2	5	2	5	y	0.00	0	1	0	1	n	0.10	1	9	1	9	n	0.33	5	10	5	10	y	0.00	0	11	0	11	n	0.22	2	7	2	7	y	ENSMUSG00000020319.10	Wdpcp	chr11	protein_coding	WD repeat containing planar cell polarity effector
novel_NIR_2843	chr11	21964954	21965221	-	21964954	22003432	A5SS	ENSMUST00000045167.11	novel	0.00	0	17	0	17	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	20	0	20	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.00	0	13	0	13	n	0.20	3	12	3	12	y	0.00	0	10	0	10	n	0.00	0	19	0	19	n	ENSMUSG00000042302.15	Ehbp1	chr11	protein_coding	EH domain binding protein 1
novel_NIR_2844	chr11	22003555	22006521	-	22003555	22006530	A5SS	ENSMUST00000045167.11	novel	0.69	9	4	9	4	y	0.40	4	6	4	6	y	0.78	14	4	14	4	y	0.67	8	4	8	4	y	0.58	19	14	19	14	y	1.00	2	0	2	0	y	0.60	6	4	6	4	y	0.36	5	9	5	9	y	0.14	1	6	1	6	n	0.42	8	11	8	11	y	0.50	5	5	5	5	y	0.57	13	10	13	10	y	ENSMUSG00000042302.15	Ehbp1	chr11	protein_coding	EH domain binding protein 1
novel_NIR_2845	chr11	22009256	22018359	-	22012887	22018359	A3SS&ES	ENSMUST00000045167.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.80	4	1	4	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000042302.15	Ehbp1	chr11	protein_coding	EH domain binding protein 1
novel_NIR_2846	chr11	22009261	22018359	-	22009261;22012887	22012780;22018359	ES	ENSMUST00000045167.11	novel	0.67	2	1.0	2	2;0	y	0.00	0	0.5	0	1;0	n	0.62	4	2.5	4	4;1	y	0.83	5	1.0	5	1;1	y	0.95	10	0.5	10	1;0	y	1.00	1	0.0	1	0;0	n	0.55	3	2.5	3	2;3	y	1.00	1	0.0	1	0;0	n	0.71	5	2.0	5	0;4	y	0.80	2	0.5	2	1;0	y	-	-	-	-	-	-	1.00	4	0.0	4	0;0	y	ENSMUSG00000042302.15	Ehbp1	chr11	protein_coding	EH domain binding protein 1
novel_NIR_2847	chr11	22018506	22039585	-	22018506	22039525	A5SS	ENSMUST00000045167.11	novel	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.27	3	8	3	8	y	0.00	0	14	0	14	n	0.20	3	12	3	12	y	0.00	0	3	0	3	n	0.50	4	4	4	4	y	0.12	1	7	1	7	n	0.00	0	12	0	12	n	0.10	1	9	1	9	n	0.00	0	4	0	4	n	0.08	1	11	1	11	n	ENSMUSG00000042302.15	Ehbp1	chr11	protein_coding	EH domain binding protein 1
novel_NIR_2848	chr11	22096027	22096463	-	22088057	22096463	A3SS	ENSMUST00000045167.11	novel	0.25	2	6	2	6	y	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.50	3	3	3	3	y	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.25	1	3	1	3	n	0.00	0	7	0	7	n	ENSMUSG00000042302.15	Ehbp1	chr11	protein_coding	EH domain binding protein 1
novel_NIR_2849	chr11	22096700	22097424	-	22096700	22101067	A5SS	ENSMUST00000109563.9	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000042302.15	Ehbp1	chr11	protein_coding	EH domain binding protein 1
novel_NIR_2850	chr11	22235874	22237003	-	22235874	22236682	5pMXE	ENSMUST00000180360.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	-	-	-	-	-	-	0.50	3	3	3	3	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000042302.15	Ehbp1	chr11	protein_coding	EH domain binding protein 1
novel_NIR_2851	chr11	22727116	22729267	-	22725028	22729267	A3SS	ENSMUST00000189990.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000051650.12	B3gnt2	chr11	protein_coding	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2
novel_NIR_2852	chr11	22730120	22749378	-	22729525	22749378	A3SS	ENSMUST00000189990.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000051650.12	B3gnt2	chr11	protein_coding	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2
novel_NIR_2853	chr11	22737249	22749378	-	22729525	22749378	A3SS	ENSMUST00000189990.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000051650.12	B3gnt2	chr11	protein_coding	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2
novel_NIR_2854	chr11	22809168;22810579	22810309;22810840	+	22809168	22810840	cassetteExon	ENSMUST00000174568.2	novel	1.00	1.5	0	1;2	0	n	0.71	5.0	2	7;3	2	y	1.00	1.0	0	1;1	0	n	0.60	1.5	1	0;3	1	n	0.25	1.0	3	0;2	3	n	-	-	-	-	-	-	1.00	1.5	0	2;1	0	n	0.60	1.5	1	1;2	1	n	1.00	2.0	0	0;4	0	n	1.00	4.0	0	2;6	0	y	1.00	3.5	0	2;5	0	y	0.43	1.5	2	0;3	2	n	ENSMUSG00000092626.2	9130230N09Rik	chr11	lncRNA	RIKEN cDNA 9130230N09 gene
novel_NIR_2855	chr11	22810579	22810840	+	22809168	22810840	A5SS	ENSMUST00000174568.2	novel	1.00	2	0	2	0	n	0.60	3	2	3	2	n	1.00	1	0	1	0	n	0.75	3	1	3	1	y	0.40	2	3	2	3	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.67	2	1	2	1	n	1.00	4	0	4	0	y	1.00	6	0	6	0	n	1.00	5	0	5	0	n	0.60	3	2	3	2	y	ENSMUSG00000092626.2	9130230N09Rik	chr11	lncRNA	RIKEN cDNA 9130230N09 gene
novel_NIR_2856	chr11	22850057	22906153	-	22850057	22932079	A5SS	ENSMUST00000071068.9	novel	0.33	5	10	5	10	y	0.50	2	2	2	2	y	0.62	5	3	5	3	y	0.40	4	6	4	6	y	0.58	7	5	7	5	y	0.75	3	1	3	1	y	0.44	7	9	7	9	y	0.67	2	1	2	1	y	0.40	2	3	2	3	y	0.43	6	8	6	8	y	0.71	12	5	12	5	y	0.62	8	5	8	5	y	ENSMUSG00000051355.19	Commd1	chr11	protein_coding	COMM domain containing 1
novel_NIR_2857	chr11	22906692	22921773	-	22906692	22922651	A5SS	ENSMUST00000162924.2	novel	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	ENSMUSG00000051355.19	Commd1	chr11	protein_coding	COMM domain containing 1
novel_NIR_2858	chr11	22906692	22921773	-	22906692	22923900	A5SS	ENSMUST00000057843.12	novel	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	ENSMUSG00000051355.19	Commd1	chr11	protein_coding	COMM domain containing 1
novel_NIR_2859	chr11	22923995	22932079	-	22850057	22932079	A3SS	ENSMUST00000071068.9	novel	0.09	1	10	1	10	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.38	3	5	3	5	y	0.50	1	1	1	1	n	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.11	1	8	1	8	n	0.00	0	5	0	5	n	0.29	2	5	2	5	y	ENSMUSG00000051355.19	Commd1	chr11	protein_coding	COMM domain containing 1
novel_NIR_2860	chr11	22971661	22973433	+	22971661	22973430	A3SS	ENSMUST00000208732.2	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.25	1	3	1	3	n	0.17	1	5	1	5	n	0.25	1	3	1	3	n	0.00	0	11	0	11	n	1.00	2	0	2	0	y	0.00	0	5	0	5	n	0.00	0	4	0	4	n	ENSMUSG00000049811.18	Fam161a	chr11	protein_coding	family with sequence similarity 161, member A
novel_NIR_2861	chr11	23270748	23293320	+	23270748;23283859	23283439;23293320	ES	ENSMUST00000180046.8	novel	0.00	0	4.0	0	2;6	n	0.00	0	2.0	0	1;3	n	0.00	0	11.0	0	12;10	n	0.00	0	8.5	0	9;8	n	0.00	0	6.0	0	4;8	n	0.00	0	4.5	0	3;6	n	0.00	0	8.0	0	3;13	n	0.00	0	12.5	0	15;10	n	0.00	0	2.0	0	3;1	n	0.22	2	7.0	2	8;6	y	0.00	0	5.0	0	7;3	n	0.00	0	4.0	0	5;3	n	ENSMUSG00000056342.17	Usp34	chr11	protein_coding	ubiquitin specific peptidase 34
novel_NIR_2862	chr11	23311716	23313058	+	23311716;23312612	23312577;23313058	ES	ENSMUST00000180046.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	16	0.0	16	0;0	y	1.00	8	0.0	8	0;0	y	1.00	8	0.0	8	0;0	y	1.00	10	0.0	10	0;0	y	0.80	6	1.5	6	2;1	y	1.00	11	0.0	11	0;0	y	-	-	-	-	-	-	1.00	14	0.0	14	0;0	y	1.00	4	0.0	4	0;0	y	0.84	8	1.5	8	1;2	y	ENSMUSG00000056342.17	Usp34	chr11	protein_coding	ubiquitin specific peptidase 34
novel_NIR_2863	chr11	23423294	23434102	+	23423054	23434102	A5SS	ENSMUST00000129368.3	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	1.00	2	0	2	0	y	0.25	1	3	1	3	n	0.33	1	2	1	2	n	0.88	7	1	7	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.50	3	3	3	3	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000056342.17	Usp34	chr11	protein_coding	ubiquitin specific peptidase 34
novel_NIR_2864	chr11	23429952	23440430	-	23439707	23440430	3pMXE	ENSMUST00000124801.8	novel	1.00	5	0	5	0	y	0.50	2	2	2	2	y	1.00	3	0	3	0	y	0.57	4	3	4	3	y	1.00	8	0	8	0	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	9	0	9	0	y	1.00	10	0	10	0	y	1.00	10	0	10	0	y	ENSMUSG00000020288.14	Ahsa2	chr11	protein_coding	AHA1, activator of heat shock protein ATPase 2
novel_NIR_2865	chr11	23439374	23440430	-	23439707	23440430	3pMXE	ENSMUST00000124801.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.25	1	3	1	3	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020288.14	Ahsa2	chr11	protein_coding	AHA1, activator of heat shock protein ATPase 2
novel_NIR_2866	chr11	23445064	23446787	-	23445064	23446766	A5SS	ENSMUST00000147157.8	novel	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	3	0	3	0	y	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	5	0	5	n	0.33	1	2	1	2	n	ENSMUSG00000020288.14	Ahsa2	chr11	protein_coding	AHA1, activator of heat shock protein ATPase 2
novel_NIR_2867	chr11	23515136	23526731	-	23515136;23516195	23516119;23526731	ES	ENSMUST00000155903.8	novel	1.00	4	0.0	4	0;0	y	0.83	5	1.0	5	0;2	y	0.91	5	0.5	5	0;1	y	0.83	10	2.0	10	0;4	y	0.74	10	3.5	10	4;3	y	0.67	1	0.5	1	1;0	n	0.80	4	1.0	4	2;0	y	1.00	2	0.0	2	0;0	y	1.00	7	0.0	7	0;0	y	0.89	8	1.0	8	2;0	y	1.00	8	0.0	8	0;0	y	0.86	3	0.5	3	0;1	y	ENSMUSG00000042208.16	0610010F05Rik	chr11	protein_coding	RIKEN cDNA 0610010F05 gene
novel_NIR_2868	chr11	23515136	23526731	-	23525517	23526731	3pMXE	ENSMUST00000043356.13	novel	0.17	4	19	4	19	y	0.26	5	14	5	14	y	0.15	5	28	5	28	y	0.33	10	20	10	20	y	0.30	10	23	10	23	y	0.07	1	13	1	13	n	0.15	4	23	4	23	y	0.13	2	13	2	13	n	0.21	7	26	7	26	y	0.17	8	39	8	39	y	0.33	8	16	8	16	y	0.10	3	26	3	26	n	ENSMUSG00000042208.16	0610010F05Rik	chr11	protein_coding	RIKEN cDNA 0610010F05 gene
novel_NIR_2869	chr11	23561857	23561945	-	23561857	23561962	A5SS	ENSMUST00000155903.8	novel	0.00	0	22	0	22	n	0.00	0	11	0	11	n	0.00	0	23	0	23	n	0.00	0	23	0	23	n	0.04	1	25	1	25	n	0.00	0	17	0	17	n	0.00	0	20	0	20	n	0.00	0	18	0	18	n	0.00	0	25	0	25	n	0.04	1	23	1	23	n	0.21	4	15	4	15	y	0.08	3	35	3	35	n	ENSMUSG00000042208.16	0610010F05Rik	chr11	protein_coding	RIKEN cDNA 0610010F05 gene
novel_NIR_2870	chr11	23570467	23572603	-	23570467	23572436	A5SS&ES	ENSMUST00000155903.8	novel	0.00	0	8	0	8	n	0.25	5	15	5	15	n	0.10	2	18	2	18	n	0.00	0	17	0	17	n	0.00	0	16	0	16	n	0.00	0	15	0	15	n	0.00	0	16	0	16	n	0.00	0	17	0	17	n	0.15	3	17	3	17	y	0.11	2	16	2	16	n	0.00	0	16	0	16	n	0.05	1	21	1	21	n	ENSMUSG00000042208.16	0610010F05Rik	chr11	protein_coding	RIKEN cDNA 0610010F05 gene
novel_NIR_2871	chr11	23570467	23572603	-	23570467	23574936	A5SS	ENSMUST00000093267.11	novel	-	-	-	-	-	-	1.00	5	0	5	0	n	1.00	2	0	2	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000042208.16	0610010F05Rik	chr11	protein_coding	RIKEN cDNA 0610010F05 gene
novel_NIR_2872	chr11	23570467;23572669	23572603;23574936	-	23570467	23574936	cassetteExon	ENSMUST00000093267.11	novel	-	-	-	-	-	-	1.00	3.5	0	5;2	0	y	1.00	1.5	0	2;1	0	n	1.00	1.5	0	0;3	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	0.5	0	0;1	0	n	0.00	0.0	1	0;0	1	n	1.00	1.5	0	3;0	0	n	1.00	1.0	0	2;0	0	n	-	-	-	-	-	-	0.33	0.5	1	1;0	1	n	ENSMUSG00000042208.16	0610010F05Rik	chr11	protein_coding	RIKEN cDNA 0610010F05 gene
novel_NIR_2873	chr11	23570467;23572669	23572603;23574936	-	23570467;23572525	23572436;23574936	MXE	ENSMUST00000141353.8	novel	0.00	0.0	5.0	0;0	8;2	n	0.32	3.5	7.5	5;2	15;0	y	0.14	1.5	9.5	2;1	18;1	n	0.15	1.5	8.5	0;3	17;0	n	0.00	0.0	10.0	0;0	16;4	n	0.00	0.0	7.5	0;0	15;0	n	0.06	0.5	8.0	0;1	16;0	n	0.00	0.0	9.5	0;0	17;2	n	0.15	1.5	8.5	3;0	17;0	n	0.10	1.0	9.5	2;0	16;3	n	0.00	0.0	8.5	0;0	16;1	n	0.04	0.5	11.0	1;0	21;1	n	ENSMUSG00000042208.16	0610010F05Rik	chr11	protein_coding	RIKEN cDNA 0610010F05 gene
novel_NIR_2874	chr11	23570467;23572669	23572603;23574936	-	23570467;23572529	23572436;23574936	MXE	ENSMUST00000155903.8	novel	0.00	0.0	8.0	0;0	8;8	n	0.21	3.5	13.0	5;2	15;11	y	0.05	1.5	27.0	2;1	18;36	n	0.07	1.5	20.5	0;3	17;24	n	0.00	0.0	15.5	0;0	16;15	n	0.00	0.0	13.5	0;0	15;12	n	0.04	0.5	13.0	0;1	16;10	n	0.00	0.0	18.0	0;0	17;19	n	0.08	1.5	16.5	3;0	17;16	n	0.06	1.0	15.0	2;0	16;14	n	0.00	0.0	13.5	0;0	16;11	n	0.02	0.5	20.5	1;0	21;20	n	ENSMUSG00000042208.16	0610010F05Rik	chr11	protein_coding	RIKEN cDNA 0610010F05 gene
novel_NIR_2875	chr11	23572669	23574936	-	23570467	23574936	A3SS	ENSMUST00000093267.11	novel	-	-	-	-	-	-	1.00	2	0	2	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000042208.16	0610010F05Rik	chr11	protein_coding	RIKEN cDNA 0610010F05 gene
novel_NIR_2876	chr11	23572669	23574936	-	23572525	23574936	A3SS	ENSMUST00000141353.8	novel	0.00	0	2	0	2	n	1.00	2	0	2	0	n	0.50	1	1	1	1	n	1.00	3	0	3	0	y	0.00	0	4	0	4	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000042208.16	0610010F05Rik	chr11	protein_coding	RIKEN cDNA 0610010F05 gene
novel_NIR_2877	chr11	23581334	23581518	-	23581334	23583112	A5SS	ENSMUST00000131612.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000042208.16	0610010F05Rik	chr11	protein_coding	RIKEN cDNA 0610010F05 gene
novel_NIR_2878	chr11	23581334	23581518	-	23581334	23583493	A5SS	ENSMUST00000155903.8	novel	0.00	0	7	0	7	n	0.17	1	5	1	5	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.21	3	11	3	11	y	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.12	2	15	2	15	n	ENSMUSG00000042208.16	0610010F05Rik	chr11	protein_coding	RIKEN cDNA 0610010F05 gene
novel_NIR_2879	chr11	23581334	23581776	-	23581334	23583112	A5SS	ENSMUST00000131612.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000042208.16	0610010F05Rik	chr11	protein_coding	RIKEN cDNA 0610010F05 gene
novel_NIR_2880	chr11	23581334	23581776	-	23581334	23583493	A5SS	ENSMUST00000155903.8	novel	0.00	0	7	0	7	n	0.38	3	5	3	5	y	0.10	1	9	1	9	n	0.00	0	14	0	14	n	0.08	1	11	1	11	n	0.33	1	2	1	2	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.07	1	14	1	14	n	0.00	0	6	0	6	n	0.12	2	15	2	15	n	ENSMUSG00000042208.16	0610010F05Rik	chr11	protein_coding	RIKEN cDNA 0610010F05 gene
novel_NIR_2881	chr11	23606130	23615246	-	23606130	23606386	A5SS&ES	ENSMUST00000124839.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020283.6	Pex13	chr11	protein_coding	peroxisomal biogenesis factor 13
novel_NIR_2882	chr11	23606130	23615246	-	23606130	23615374	A5SS	ENSMUST00000146533.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020283.6	Pex13	chr11	protein_coding	peroxisomal biogenesis factor 13
novel_NIR_2883	chr11	23606130	23615354	-	23606130	23606386	A5SS&ES	ENSMUST00000124839.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.17	1	5	1	5	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000020283.6	Pex13	chr11	protein_coding	peroxisomal biogenesis factor 13
novel_NIR_2884	chr11	23606130	23615354	-	23606130	23615374	A5SS	ENSMUST00000146533.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000020283.6	Pex13	chr11	protein_coding	peroxisomal biogenesis factor 13
novel_NIR_2885	chr11	25553036	25553936	-	25553036	25553906	A5SS	ENSMUST00000144503.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000032985.16	5730522E02Rik	chr11	protein_coding	RIKEN cDNA 5730522E02 gene
novel_NIR_2886	chr11	25553036	25553936	-	25553036	25569510	A5SS	ENSMUST00000153834.8	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000032985.16	5730522E02Rik	chr11	protein_coding	RIKEN cDNA 5730522E02 gene
novel_NIR_2887	chr11	26418717	26419652	+	26418717;26418882	26418816;26419652	ES	ENSMUST00000109509.8	novel	0.00	0	9.5	0	0;19	n	0.16	2	10.5	2	0;21	y	0.00	0	12.5	0	0;25	n	0.10	1	9.0	1	0;18	n	0.00	0	18.0	0	0;36	n	0.00	0	7.5	0	0;15	n	0.00	0	13.0	0	0;26	n	0.00	0	6.0	0	0;12	n	0.07	1	12.5	1	0;25	n	0.00	0	14.0	0	0;28	n	0.00	0	12.5	0	0;25	n	0.00	0	16.5	0	0;33	n	ENSMUSG00000004018.10	Fancl	chr11	protein_coding	Fanconi anemia, complementation group L
novel_NIR_2888	chr11	29138286	29144573	+	29138574	29144573	A5SS	ENSMUST00000102856.9	novel	0.03	1	28	1	28	n	0.23	3	10	3	10	y	0.16	11	58	11	58	y	0.19	8	35	8	35	y	0.19	7	30	7	30	y	0.24	4	13	4	13	y	0.16	8	41	8	41	y	0.00	0	22	0	22	n	0.19	4	17	4	17	y	0.08	3	36	3	36	n	0.14	2	12	2	12	n	0.14	5	30	5	30	n	ENSMUSG00000020463.16	Ppp4r3b	chr11	protein_coding	protein phosphatase 4 regulatory subunit 3B
novel_NIR_2889	chr11	29161004	29161116	+	29159434	29161116	A5SS	ENSMUST00000127818.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000020463.16	Ppp4r3b	chr11	protein_coding	protein phosphatase 4 regulatory subunit 3B
novel_NIR_2890	chr11	29172880	29175857	-	29172883	29175857	A3SS	ENSMUST00000020754.10	novel	0.03	2	61	2	61	n	0.00	0	64	0	64	n	0.00	0	51	0	51	n	0.00	0	54	0	54	n	0.04	2	50	2	50	n	0.00	0	37	0	37	n	0.00	0	57	0	57	n	0.16	6	31	6	31	y	0.00	0	52	0	52	n	0.06	6	100	6	100	n	0.00	0	45	0	45	n	0.00	0	86	0	86	n	ENSMUSG00000020462.15	Cfap36	chr11	protein_coding	cilia and flagella associated protein 36
novel_NIR_2891	chr11	29476565	29476693	+	29476487	29476693	A5SS	ENSMUST00000133452.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000020459.15	Mtif2	chr11	protein_coding	mitochondrial translational initiation factor 2
novel_NIR_2892	chr11	29476565	29476693	+	29476565	29479929	A3SS	ENSMUST00000136351.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.67	4	2	4	2	y	ENSMUSG00000020459.15	Mtif2	chr11	protein_coding	mitochondrial translational initiation factor 2
novel_NIR_2893	chr11	29480154	29483226	+	29480154;29480692	29480581;29483226	ES	ENSMUST00000133452.8	novel	0.06	2	30.5	2	26;35	n	0.00	0	25.0	0	20;30	n	0.14	6	36.0	6	35;37	n	0.10	6	52.0	6	49;55	n	0.25	12	35.5	12	30;41	y	0.17	5	25.0	5	30;20	y	0.10	5	45.5	5	43;48	n	0.16	7	38.0	7	38;38	y	0.15	6	35.0	6	31;39	y	0.17	12	57.5	12	56;59	y	0.13	4	26.5	4	28;25	n	0.10	6	57.0	6	55;59	n	ENSMUSG00000020459.15	Mtif2	chr11	protein_coding	mitochondrial translational initiation factor 2
novel_NIR_2894	chr11	29686498	29687980	+	29686498	29691500	A3SS	ENSMUST00000125735.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000020458.17	Rtn4	chr11	protein_coding	reticulon 4
novel_NIR_2895	chr11	29686498	29687980	+	29686498	29691695	A3SS	ENSMUST00000156217.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000020458.17	Rtn4	chr11	protein_coding	reticulon 4
novel_NIR_2896	chr11	30742038	30742789	+	30742038	30752814	A3SS	ENSMUST00000041231.14	novel	0.00	0	26	0	26	n	0.20	3	12	3	12	y	0.00	0	65	0	65	n	0.00	0	67	0	67	n	0.01	1	74	1	74	n	0.00	0	48	0	48	n	0.00	0	65	0	65	n	0.00	0	58	0	58	n	0.00	0	23	0	23	n	0.01	1	69	1	69	n	0.00	0	33	0	33	n	0.03	2	78	2	78	n	ENSMUSG00000040850.18	Psme4	chr11	protein_coding	proteasome (prosome, macropain) activator subunit 4
novel_NIR_2897	chr11	3076058	3078929	+	3076058;3077644	3077479;3078929	ES	ENSMUST00000145164.8	novel	0.11	5	38.5	5	41;36	n	0.05	2	36.0	2	34;38	n	0.25	32	95.5	32	109;82	y	0.06	2	34.0	2	32;36	n	0.17	9	45.0	9	41;49	y	0.02	1	46.0	1	45;47	n	0.00	0	34.0	0	32;36	n	0.07	3	37.0	3	35;39	n	0.04	1	25.0	1	26;24	n	0.00	0	21.0	0	24;18	n	0.13	4	26.5	4	20;33	n	0.12	4	29.0	4	32;26	n	ENSMUSG00000082286.12	Pisd-ps1	chr11	transcribed_unprocessed_pseudogene	phosphatidylserine decarboxylase, pseudogene 1
novel_NIR_2898	chr11	3076058	3078929	+	3077644	3078929	A5SS&ES	ENSMUST00000119128.9	novel	0.12	5	36	5	36	n	0.05	2	38	2	38	n	0.28	32	82	32	82	y	0.05	2	36	2	36	n	0.16	9	49	9	49	y	0.02	1	47	1	47	n	0.00	0	36	0	36	n	0.07	3	39	3	39	n	0.04	1	24	1	24	n	0.00	0	18	0	18	n	0.11	4	33	4	33	n	0.13	4	26	4	26	n	ENSMUSG00000082286.12	Pisd-ps1	chr11	transcribed_unprocessed_pseudogene	phosphatidylserine decarboxylase, pseudogene 1
novel_NIR_2899	chr11	3077362	3077479	+	3076178	3077479	A5SS	ENSMUST00000119128.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000082286.12	Pisd-ps1	chr11	transcribed_unprocessed_pseudogene	phosphatidylserine decarboxylase, pseudogene 1
novel_NIR_2900	chr11	3077362	3077479	+	3077219	3077479	A5SS	ENSMUST00000132408.8	novel	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	ENSMUSG00000082286.12	Pisd-ps1	chr11	transcribed_unprocessed_pseudogene	phosphatidylserine decarboxylase, pseudogene 1
novel_NIR_2901	chr11	3077644	3109498	+	3077644	3078929	3pMXE	ENSMUST00000145164.8	novel	0.00	0	36	0	36	n	0.21	10	38	10	38	y	0.01	1	82	1	82	n	0.00	0	36	0	36	n	0.02	1	49	1	49	n	0.02	1	47	1	47	n	0.00	0	36	0	36	n	0.00	0	39	0	39	n	0.00	0	24	0	24	n	0.45	15	18	15	18	y	0.38	20	33	20	33	y	0.00	0	26	0	26	n	ENSMUSG00000082286.12	Pisd-ps1	chr11	transcribed_unprocessed_pseudogene	phosphatidylserine decarboxylase, pseudogene 1
novel_NIR_2902	chr11	3079118	3079382	+	3079165	3079382	A5SS	ENSMUST00000119128.9	novel	0.75	3	1	3	1	y	0.00	0	3	0	3	n	0.33	7	14	7	14	y	0.00	0	1	0	1	n	0.50	3	3	3	3	y	0.27	3	8	3	8	y	0.00	0	7	0	7	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.50	4	4	4	4	y	ENSMUSG00000082286.12	Pisd-ps1	chr11	transcribed_unprocessed_pseudogene	phosphatidylserine decarboxylase, pseudogene 1
novel_NIR_2903	chr11	30815493	30824118	+	30816279	30824118	A5SS&ES	ENSMUST00000155719.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040850.18	Psme4	chr11	protein_coding	proteasome (prosome, macropain) activator subunit 4
novel_NIR_2904	chr11	3082327	3082763	-	3082327	3082887	A5SS	ENSMUST00000101655.10	novel	0.30	11	26	11	26	y	0.07	4	51	4	51	n	0.02	1	54	1	54	n	0.00	0	53	0	53	n	0.02	1	64	1	64	n	0.07	3	39	3	39	n	0.07	4	55	4	55	n	0.08	3	36	3	36	n	0.07	2	27	2	27	n	0.08	5	55	5	55	n	0.07	3	37	3	37	n	0.02	1	47	1	47	n	ENSMUSG00000023764.19	Sfi1	chr11	protein_coding	Sfi1 homolog, spindle assembly associated (yeast)
novel_NIR_2905	chr11	30903216	30903914	-	30903116	30903914	A3SS	ENSMUST00000152770.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000020311.18	Erlec1	chr11	protein_coding	endoplasmic reticulum lectin 1
novel_NIR_2906	chr11	30933600	30936112	-	30927746	30936112	A3SS	ENSMUST00000020553.5	novel	0.33	2	4	2	4	y	0.33	2	4	2	4	y	-	-	-	-	-	-	0.20	2	8	2	8	y	0.22	2	7	2	7	y	0.00	0	2	0	2	n	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.24	4	13	4	13	y	0.27	4	11	4	11	y	0.00	0	11	0	11	n	ENSMUSG00000020309.7	Chac2	chr11	protein_coding	ChaC, cation transport regulator 2
novel_NIR_2907	chr11	30934335	30936112	-	30927746	30936112	A3SS	ENSMUST00000020553.5	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.22	2	7	2	7	y	0.00	0	2	0	2	n	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	ENSMUSG00000020309.7	Chac2	chr11	protein_coding	ChaC, cation transport regulator 2
novel_NIR_2908	chr11	3095322	3095438	-	3095322	3096162	A5SS	ENSMUST00000101655.10	novel	0.04	1	22	1	22	n	0.21	5	19	5	19	y	0.41	7	10	7	10	y	0.00	0	24	0	24	n	0.17	8	38	8	38	y	0.11	2	16	2	16	n	0.00	0	26	0	26	n	0.00	0	10	0	10	n	0.00	0	17	0	17	n	0.00	0	23	0	23	n	0.00	0	26	0	26	n	0.00	0	14	0	14	n	ENSMUSG00000023764.19	Sfi1	chr11	protein_coding	Sfi1 homolog, spindle assembly associated (yeast)
novel_NIR_2909	chr11	3095322	3095438	-	3095322	3103432	A5SS	ENSMUST00000144778.8	novel	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	8	0	8	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000023764.19	Sfi1	chr11	protein_coding	Sfi1 homolog, spindle assembly associated (yeast)
novel_NIR_2910	chr11	3101489	3103432	-	3095322	3103432	A3SS	ENSMUST00000144778.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000023764.19	Sfi1	chr11	protein_coding	Sfi1 homolog, spindle assembly associated (yeast)
novel_NIR_2911	chr11	3101489	3103432	-	3096292	3103432	A3SS	ENSMUST00000101655.10	novel	0.00	0	14	0	14	n	0.00	0	26	0	26	n	0.00	0	9	0	9	n	0.11	2	17	2	17	n	0.00	0	21	0	21	n	0.00	0	7	0	7	n	0.00	0	24	0	24	n	0.00	0	7	0	7	n	0.23	3	10	3	10	y	0.00	0	17	0	17	n	0.00	0	12	0	12	n	0.00	0	18	0	18	n	ENSMUSG00000023764.19	Sfi1	chr11	protein_coding	Sfi1 homolog, spindle assembly associated (yeast)
novel_NIR_2912	chr11	3153336	3153630	+	3152556	3153630	A5SS	ENSMUST00000020734.11	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020454.18	Eif4enif1	chr11	protein_coding	eukaryotic translation initiation factor 4E nuclear import factor 1
novel_NIR_2913	chr11	3153336	3153630	+	3152797	3153630	A5SS	ENSMUST00000125224.8	novel	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	14	0	14	n	0.22	2	7	2	7	y	0.00	0	2	0	2	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.22	2	7	2	7	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000020454.18	Eif4enif1	chr11	protein_coding	eukaryotic translation initiation factor 4E nuclear import factor 1
novel_NIR_2914	chr11	3153336	3153630	+	3152992	3153630	A5SS	ENSMUST00000125637.8	novel	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.00	0	13	0	13	n	0.00	0	15	0	15	n	0.67	2	1	2	1	y	0.00	0	9	0	9	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.22	2	7	2	7	y	0.00	0	7	0	7	n	0.00	0	6	0	6	n	ENSMUSG00000020454.18	Eif4enif1	chr11	protein_coding	eukaryotic translation initiation factor 4E nuclear import factor 1
novel_NIR_2915	chr11	3153336	3153630	+	3153194	3153630	A5SS	ENSMUST00000179770.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020454.18	Eif4enif1	chr11	protein_coding	eukaryotic translation initiation factor 4E nuclear import factor 1
novel_NIR_2916	chr11	3153336	3153630	+	3153326	3153630	A5SS	ENSMUST00000110048.8	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.40	2	3	2	3	y	0.00	0	5	0	5	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000020454.18	Eif4enif1	chr11	protein_coding	eukaryotic translation initiation factor 4E nuclear import factor 1
novel_NIR_2917	chr11	31751074	31752332	-	31751037	31752332	A3SS	ENSMUST00000129425.8	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.20	1	4	1	4	n	-	-	-	-	-	-	0.50	2	2	2	2	y	1.00	1	0	1	0	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000085772.8	D630024D03Rik	chr11	lncRNA	RIKEN cDNA D630024D03 gene
novel_NIR_2918	chr11	31768647	31773332	-	31768602	31773332	A3SS	ENSMUST00000126265.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000085772.8	D630024D03Rik	chr11	lncRNA	RIKEN cDNA D630024D03 gene
novel_NIR_2919	chr11	31768647	31774293	-	31752448	31774293	A3SS	ENSMUST00000129425.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000085772.8	D630024D03Rik	chr11	lncRNA	RIKEN cDNA D630024D03 gene
novel_NIR_2920	chr11	31768647	31774293	-	31752981	31774293	A3SS	ENSMUST00000134944.2	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000085772.8	D630024D03Rik	chr11	lncRNA	RIKEN cDNA D630024D03 gene
novel_NIR_2921	chr11	31768647	31774293	-	31773496	31774293	A3SS&ES	ENSMUST00000126265.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000085772.8	D630024D03Rik	chr11	lncRNA	RIKEN cDNA D630024D03 gene
novel_NIR_2922	chr11	3180101	3180306	+	3180101	3184462	A3SS	ENSMUST00000020734.11	novel	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	24	0	24	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	20	0	20	n	0.22	2	7	2	7	y	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	ENSMUSG00000020454.18	Eif4enif1	chr11	protein_coding	eukaryotic translation initiation factor 4E nuclear import factor 1
novel_NIR_2923	chr11	3180101	3184585	+	3180101	3184462	A3SS	ENSMUST00000020734.11	novel	0.09	1	10	1	10	n	0.00	0	7	0	7	n	0.00	0	24	0	24	n	0.00	0	7	0	7	n	0.07	1	13	1	13	n	0.00	0	11	0	11	n	0.05	1	20	1	20	n	0.12	1	7	1	7	n	0.00	0	10	0	10	n	0.17	2	10	2	10	y	0.00	0	9	0	9	n	0.08	1	11	1	11	n	ENSMUSG00000020454.18	Eif4enif1	chr11	protein_coding	eukaryotic translation initiation factor 4E nuclear import factor 1
novel_NIR_2924	chr11	3180101	3184585	+	3180101;3184059	3183988;3184585	ES	ENSMUST00000135223.2	novel	0.13	1	6.5	1	13;0	n	0.00	0	9.0	0	16;2	n	0.00	0	11.5	0	23;0	n	0.00	0	10.0	0	20;0	n	0.05	1	20.0	1	37;3	n	0.00	0	9.0	0	18;0	n	0.06	1	15.0	1	27;3	n	0.06	1	15.5	1	29;2	n	0.00	0	7.5	0	15;0	n	0.15	2	11.5	2	23;0	y	0.00	0	8.5	0	17;0	n	0.07	1	14.0	1	26;2	n	ENSMUSG00000020454.18	Eif4enif1	chr11	protein_coding	eukaryotic translation initiation factor 4E nuclear import factor 1
novel_NIR_2925	chr11	31839939	31870409	+	31839939;31858875	31858825;31870409	ES	ENSMUST00000155278.2	novel	0.57	6	4.5	6	5;4	y	0.19	2	8.5	2	5;12	y	0.39	13	20.5	13	23;18	y	0.30	7	16.0	7	17;15	y	0.08	2	23.5	2	25;22	n	0.09	2	21.5	2	26;17	n	0.35	12	22.0	12	25;19	y	0.26	5	14.5	5	20;9	y	0.34	6	11.5	6	14;9	y	0.25	10	29.5	10	35;24	y	0.59	11	7.5	11	3;12	y	0.24	8	26.0	8	29;23	y	ENSMUSG00000020300.15	Cpeb4	chr11	protein_coding	cytoplasmic polyadenylation element binding protein 4
novel_NIR_2926	chr11	31839939	31870409	+	31839939;31868824	31868801;31870409	ES	ENSMUST00000109412.9	novel	1.00	6	0.0	6	0;0	y	1.00	2	0.0	2	0;0	y	1.00	13	0.0	13	0;0	y	1.00	7	0.0	7	0;0	y	0.80	2	0.5	2	0;1	y	1.00	2	0.0	2	0;0	y	1.00	12	0.0	12	0;0	y	1.00	5	0.0	5	0;0	y	1.00	6	0.0	6	0;0	y	1.00	10	0.0	10	0;0	y	1.00	11	0.0	11	0;0	y	1.00	8	0.0	8	0;0	y	ENSMUSG00000020300.15	Cpeb4	chr11	protein_coding	cytoplasmic polyadenylation element binding protein 4
novel_NIR_2927	chr11	32164105	32164182	-	32164109	32164182	A3SS	ENSMUST00000020524.15	novel	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.20	2	8	2	8	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.12	1	7	1	7	n	0.17	1	5	1	5	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.14	1	6	1	6	n	0.00	0	2	0	2	n	ENSMUSG00000020282.19	Rhbdf1	chr11	protein_coding	rhomboid 5 homolog 1
novel_NIR_2928	chr11	32177949	32179880	+	32177949	32179247	A3SS&ES	ENSMUST00000138050.2	novel	0.67	4	2	4	2	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	ENSMUSG00000020287.16	Mpg	chr11	protein_coding	N-methylpurine-DNA glycosylase
novel_NIR_2929	chr11	32177949	32179880	+	32177949;32179616	32179247;32179880	ES	ENSMUST00000142964.8	novel	0.80	4	1.0	4	2;0	y	0.00	0	1.5	0	3;0	n	0.00	0	2.0	0	4;0	n	0.00	0	1.0	0	2;0	n	0.00	0	4.0	0	8;0	n	0.00	0	2.5	0	5;0	n	0.00	0	4.5	0	6;3	n	0.00	0	1.5	0	3;0	n	0.00	0	3.0	0	6;0	n	0.00	0	4.5	0	4;5	n	0.00	0	0.5	0	1;0	n	0.00	0	2.5	0	5;0	n	ENSMUSG00000020287.16	Mpg	chr11	protein_coding	N-methylpurine-DNA glycosylase
novel_NIR_2930	chr11	32209549	32213025	-	32200278	32213025	A3SS	ENSMUST00000124640.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000020289.16	Nprl3	chr11	protein_coding	nitrogen permease regulator-like 3
novel_NIR_2931	chr11	32209549	32213025	-	32203949	32213025	A3SS	ENSMUST00000141859.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000020289.16	Nprl3	chr11	protein_coding	nitrogen permease regulator-like 3
novel_NIR_2932	chr11	32209549	32213025	-	32205568	32213025	A3SS	ENSMUST00000020530.12	novel	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.25	2	6	2	6	y	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	ENSMUSG00000020289.16	Nprl3	chr11	protein_coding	nitrogen permease regulator-like 3
novel_NIR_2933	chr11	32592935	32661772	+	32592935	32602748	3pMXE	ENSMUST00000137898.2	novel	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.31	5	11	5	11	y	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.26	5	14	5	14	y	ENSMUSG00000020271.18	Fbxw11	chr11	protein_coding	F-box and WD-40 domain protein 11
novel_NIR_2934	chr11	32592935	32661772	+	32592935;32630302	32630201;32661772	ES	ENSMUST00000093205.13	novel	-	-	-	-	-	-	0.00	0	1.0	0	2;0	n	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	0.83	5	1.0	5	0;2	y	-	-	-	-	-	-	0.00	0	2.0	0	1;3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	0.5	0	0;1	n	0.00	0	1.0	0	0;2	n	1.00	5	0.0	5	0;0	y	ENSMUSG00000020271.18	Fbxw11	chr11	protein_coding	F-box and WD-40 domain protein 11
novel_NIR_2935	chr11	32592935	32661772	+	32592935;32658250	32658188;32661772	ES	ENSMUST00000109366.8	novel	0.00	0	8.5	0	5;12	n	0.00	0	3.0	0	2;4	n	0.00	0	12.0	0	6;18	n	0.00	0	8.0	0	4;12	n	0.33	5	10.0	5	6;14	y	0.00	0	5.0	0	2;8	n	0.00	0	7.0	0	5;9	n	0.00	0	9.0	0	7;11	n	0.00	0	5.0	0	3;7	n	0.00	0	11.0	0	4;18	n	0.00	0	7.0	0	4;10	n	0.32	5	10.5	5	9;12	y	ENSMUSG00000020271.18	Fbxw11	chr11	protein_coding	F-box and WD-40 domain protein 11
novel_NIR_2936	chr11	32602904	32658188	+	32592935	32658188	A5SS	ENSMUST00000109366.8	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.60	3	2	3	2	y	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	ENSMUSG00000020271.18	Fbxw11	chr11	protein_coding	F-box and WD-40 domain protein 11
novel_NIR_2937	chr11	32602904	32658188	+	32602904	32630201	A3SS&ES	ENSMUST00000143290.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000020271.18	Fbxw11	chr11	protein_coding	F-box and WD-40 domain protein 11
novel_NIR_2938	chr11	32602904	32658188	+	32630302	32658188	A5SS&ES	ENSMUST00000076383.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020271.18	Fbxw11	chr11	protein_coding	F-box and WD-40 domain protein 11
novel_NIR_2939	chr11	32602904	32661772	+	32602904;32630302	32630201;32661772	ES	ENSMUST00000143290.2	novel	0.00	0	0.5	0	1;0	n	0.67	1	0.5	1	1;0	n	0.92	12	1.0	12	2;0	y	1.00	3	0.0	3	0;0	y	0.75	3	1.0	3	0;2	y	-	-	-	-	-	-	0.00	0	3.0	0	3;3	n	1.00	3	0.0	3	0;0	y	1.00	1	0.0	1	0;0	n	0.00	0	1.0	0	1;1	n	0.00	0	2.0	0	2;2	n	1.00	7	0.0	7	0;0	y	ENSMUSG00000020271.18	Fbxw11	chr11	protein_coding	F-box and WD-40 domain protein 11
novel_NIR_2940	chr11	32602904	32661772	+	32630302	32661772	A5SS&ES	ENSMUST00000093205.13	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	12	0	12	0	y	1.00	3	0	3	0	y	0.60	3	2	3	2	y	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	7	0	7	0	y	ENSMUSG00000020271.18	Fbxw11	chr11	protein_coding	F-box and WD-40 domain protein 11
novel_NIR_2941	chr11	32602904	32661772	+	32658250	32661772	A5SS&ES	ENSMUST00000109366.8	novel	0.00	0	12	0	12	n	0.20	1	4	1	4	n	0.40	12	18	12	18	y	0.20	3	12	3	12	y	0.18	3	14	3	14	y	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.21	3	11	3	11	y	0.12	1	7	1	7	n	0.00	0	18	0	18	n	0.00	0	10	0	10	n	0.37	7	12	7	12	y	ENSMUSG00000020271.18	Fbxw11	chr11	protein_coding	F-box and WD-40 domain protein 11
novel_NIR_2942	chr11	3402740	3402955	+	3402740	3406763	A3SS	ENSMUST00000144844.2	novel	0.00	0	1	0	1	n	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.50	3	3	3	3	y	0.00	0	1	0	1	n	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034587.9	8430429K09Rik	chr11	lncRNA	RIKEN cDNA 8430429K09 gene
novel_NIR_2943	chr11	3402740	3402955	+	3402740	3421332	A3SS	ENSMUST00000142397.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034587.9	8430429K09Rik	chr11	lncRNA	RIKEN cDNA 8430429K09 gene
novel_NIR_2944	chr11	35719640	35720910	-	35719640	35723398	A5SS	ENSMUST00000137815.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000018848.5	Rars	chr11	protein_coding	arginyl-tRNA synthetase
novel_NIR_2945	chr11	35724133	35724943	-	35724133	35725264	A5SS	ENSMUST00000018992.4	novel	0.24	7	22	7	22	y	0.00	0	18	0	18	n	0.00	0	78	0	78	n	0.24	13	42	13	42	y	0.07	3	42	3	42	n	0.00	0	20	0	20	n	0.00	0	43	0	43	n	0.16	6	31	6	31	y	0.18	5	23	5	23	y	0.20	10	39	10	39	y	0.03	1	33	1	33	n	0.14	4	25	4	25	n	ENSMUSG00000018848.5	Rars	chr11	protein_coding	arginyl-tRNA synthetase
novel_NIR_2946	chr11	3607987	3608672	+	3600447	3608672	A5SS	ENSMUST00000096441.5	novel	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.00	0	19	0	19	n	0.00	0	7	0	7	n	0.27	3	8	3	8	y	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.08	1	12	1	12	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	ENSMUSG00000034543.16	Morc2a	chr11	protein_coding	microrchidia 2A
novel_NIR_2947	chr11	3634748	3634838	+	3634745	3634838	A5SS	ENSMUST00000096441.5	novel	0.27	6	16	6	16	y	0.33	4	8	4	8	y	0.20	8	33	8	33	y	0.22	6	21	6	21	y	0.41	13	19	13	19	y	0.25	4	12	4	12	y	0.10	3	26	3	26	n	0.16	3	16	3	16	y	0.00	0	6	0	6	n	0.23	5	17	5	17	y	0.25	4	12	4	12	y	0.23	5	17	5	17	y	ENSMUSG00000034543.16	Morc2a	chr11	protein_coding	microrchidia 2A
novel_NIR_2948	chr11	3933840	3934826	+	3933840	3934941	A3SS	ENSMUST00000063004.14	novel	0.00	0	2	0	2	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000049721.15	Gal3st1	chr11	protein_coding	galactose-3-O-sulfotransferase 1
novel_NIR_2949	chr11	3933840	3934826	+	3933840	3946909	A3SS	ENSMUST00000078757.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000049721.15	Gal3st1	chr11	protein_coding	galactose-3-O-sulfotransferase 1
novel_NIR_2950	chr11	3934290	3934941	+	3933840	3934941	A5SS	ENSMUST00000063004.14	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000049721.15	Gal3st1	chr11	protein_coding	galactose-3-O-sulfotransferase 1
novel_NIR_2951	chr11	3934765	3934941	+	3933840	3934941	A5SS	ENSMUST00000063004.14	novel	0.00	0	2	0	2	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000049721.15	Gal3st1	chr11	protein_coding	galactose-3-O-sulfotransferase 1
novel_NIR_2952	chr11	3981661	3981814	+	3981661	3985123	A3SS	ENSMUST00000126423.8	novel	0.14	2	12	2	12	n	0.00	0	17	0	17	n	0.00	0	23	0	23	n	0.00	0	30	0	30	n	0.00	0	20	0	20	n	0.17	2	10	2	10	y	0.08	2	22	2	22	n	0.07	2	25	2	25	n	0.00	0	21	0	21	n	0.00	0	32	0	32	n	0.19	3	13	3	13	y	0.03	1	32	1	32	n	ENSMUSG00000019368.14	Sec14l4	chr11	protein_coding	SEC14-like lipid binding 4
novel_NIR_2953	chr11	3989830	3989913	+	3989830	3990046	A3SS	ENSMUST00000131171.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000019368.14	Sec14l4	chr11	protein_coding	SEC14-like lipid binding 4
novel_NIR_2954	chr11	3989830	3989986	+	3989830	3990046	A3SS	ENSMUST00000131171.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000019368.14	Sec14l4	chr11	protein_coding	SEC14-like lipid binding 4
novel_NIR_2955	chr11	3992251	3992389	+	3992251	3992399	A3SS	ENSMUST00000129689.8	novel	0.50	2	2	2	2	y	0.58	7	5	7	5	y	0.67	4	2	4	2	y	0.50	3	3	3	3	y	0.36	5	9	5	9	y	1.00	7	0	7	0	y	1.00	12	0	12	0	y	1.00	5	0	5	0	y	1.00	5	0	5	0	y	0.57	4	3	4	3	y	0.71	5	2	5	2	y	0.56	5	4	5	4	y	ENSMUSG00000019368.14	Sec14l4	chr11	protein_coding	SEC14-like lipid binding 4
novel_NIR_2956	chr11	3992251	3993239	+	3992251	3992399	3pMXE	ENSMUST00000129689.8	novel	0.50	2	2	2	2	y	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.57	4	3	4	3	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000019368.14	Sec14l4	chr11	protein_coding	SEC14-like lipid binding 4
novel_NIR_2957	chr11	3992251	3996213	+	3992251	3992399	3pMXE	ENSMUST00000129689.8	novel	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.10	1	9	1	9	n	1.00	2	0	2	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000019368.14	Sec14l4	chr11	protein_coding	SEC14-like lipid binding 4
novel_NIR_2958	chr11	3992251	4002271	+	3992251	3992399	3pMXE	ENSMUST00000129689.8	novel	0.60	3	2	3	2	y	0.17	1	5	1	5	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.44	7	9	7	9	y	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	ENSMUSG00000019368.14	Sec14l4	chr11	protein_coding	SEC14-like lipid binding 4
novel_NIR_2959	chr11	4044516	4044640	-	4044516	4044814	A5SS	ENSMUST00000123607.2	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.57	4	3	4	3	y	0.00	0	3	0	3	n	ENSMUSG00000004748.6	Mtfp1	chr11	protein_coding	mitochondrial fission process 1
novel_NIR_2960	chr11	4044516	4045212	-	4044516	4044814	5pMXE	ENSMUST00000123607.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000004748.6	Mtfp1	chr11	protein_coding	mitochondrial fission process 1
novel_NIR_2961	chr11	4044516	4045229	-	4044516	4044814	5pMXE	ENSMUST00000123607.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.25	1	3	1	3	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.67	4	2	4	2	y	0.40	2	3	2	3	y	0.00	0	3	0	3	n	ENSMUSG00000004748.6	Mtfp1	chr11	protein_coding	mitochondrial fission process 1
novel_NIR_2962	chr11	4061937	4062870	-	4061937	4068625	A5SS	ENSMUST00000123901.8	novel	0.12	1	7	1	7	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.10	1	9	1	9	n	0.05	1	21	1	21	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.50	4	4	4	4	y	0.00	0	3	0	3	n	0.00	0	18	0	18	n	0.25	1	3	1	3	n	0.00	0	13	0	13	n	ENSMUSG00000003585.14	Sec14l2	chr11	protein_coding	SEC14-like lipid binding 2
novel_NIR_2963	chr11	4061937	4062870	-	4061937	4073166	A5SS	ENSMUST00000145173.2	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.50	4	4	4	4	y	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000003585.14	Sec14l2	chr11	protein_coding	SEC14-like lipid binding 2
novel_NIR_2964	chr11	40626893	40627322	+	40626893	40627395	A3SS	ENSMUST00000127382.2	novel	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.38	3	5	3	5	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	ENSMUSG00000020328.11	Nudcd2	chr11	protein_coding	NudC domain containing 2
novel_NIR_2965	chr11	4068850	4073166	-	4061937	4073166	A3SS	ENSMUST00000145173.2	novel	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.67	4	2	4	2	y	0.83	5	1	5	1	n	0.62	5	3	5	3	y	0.20	1	4	1	4	n	0.60	3	2	3	2	y	0.60	6	4	6	4	y	1.00	4	0	4	0	y	1.00	5	0	5	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000003585.14	Sec14l2	chr11	protein_coding	SEC14-like lipid binding 2
novel_NIR_2966	chr11	4086797	4087174	+	4086797	4087309	A3SS	ENSMUST00000145705.8	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000003581.15	Rnf215	chr11	protein_coding	ring finger protein 215
novel_NIR_2967	chr11	4094587	4096234	-	4094649	4096234	A3SS	ENSMUST00000137060.2	novel	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.20	3	12	3	12	y	0.31	4	9	4	9	y	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.09	2	20	2	20	n	0.00	0	11	0	11	n	0.04	1	22	1	22	n	0.00	0	24	0	24	n	0.05	1	20	1	20	n	0.14	3	19	3	19	n	ENSMUSG00000051427.15	Ccdc157	chr11	protein_coding	coiled-coil domain containing 157
novel_NIR_2968	chr11	43316508	43316688	-	43316508	43317001	A5SS	ENSMUST00000101340.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.33	2	4	2	4	y	0.00	0	7	0	7	n	ENSMUSG00000020415.17	Pttg1	chr11	protein_coding	pituitary tumor-transforming gene 1
novel_NIR_2969	chr11	43316508	43316688	-	43316508	43317016	A5SS	ENSMUST00000118368.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	ENSMUSG00000020415.17	Pttg1	chr11	protein_coding	pituitary tumor-transforming gene 1
novel_NIR_2970	chr11	43327312	43328172	+	43326038	43328172	A5SS	ENSMUST00000126128.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000020409.11	Slu7	chr11	protein_coding	SLU7 splicing factor homolog (S. cerevisiae)
novel_NIR_2971	chr11	43329711	43329929	+	43329711	43329848	A3SS	ENSMUST00000149402.2	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000020409.11	Slu7	chr11	protein_coding	SLU7 splicing factor homolog (S. cerevisiae)
novel_NIR_2972	chr11	43329711	43329982	+	43329711	43329848	A3SS	ENSMUST00000149402.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000020409.11	Slu7	chr11	protein_coding	SLU7 splicing factor homolog (S. cerevisiae)
novel_NIR_2973	chr11	43575052;43577252	43577184;43595361	+	43575052	43595361	cassetteExon	ENSMUST00000109280.2	novel	1.00	1.0	0	1;1	0	n	1.00	1.5	0	3;0	0	n	0.60	3.0	2	4;2	2	y	-	-	-	-	-	-	1.00	1.0	0	0;2	0	n	-	-	-	-	-	-	0.33	2.5	5	2;3	5	y	1.00	2.5	0	2;3	0	y	1.00	2.5	0	4;1	0	n	0.33	0.5	1	1;0	1	n	-	-	-	-	-	-	0.75	3.0	1	3;3	1	y	ENSMUSG00000044950.8	Pwwp2a	chr11	protein_coding	PWWP domain containing 2A
novel_NIR_2974	chr11	43575052;43577264	43577184;43595361	+	43575052	43595361	cassetteExon	ENSMUST00000109280.2	novel	1.00	0.5	0	1;0	0	n	1.00	2.0	0	3;1	0	n	0.50	2.0	2	4;0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.17	1.0	5	2;0	5	n	1.00	1.0	0	2;0	0	n	1.00	3.0	0	4;2	0	y	0.50	1.0	1	1;1	1	n	-	-	-	-	-	-	0.60	1.5	1	3;0	1	n	ENSMUSG00000044950.8	Pwwp2a	chr11	protein_coding	PWWP domain containing 2A
novel_NIR_2975	chr11	43577252	43595361	+	43573443	43595361	A5SS	ENSMUST00000061070.6	novel	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.00	0	5	0	5	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.38	3	5	3	5	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.38	3	5	3	5	n	ENSMUSG00000044950.8	Pwwp2a	chr11	protein_coding	PWWP domain containing 2A
novel_NIR_2976	chr11	43577252	43595361	+	43575052	43595361	A5SS	ENSMUST00000109280.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	2	2	2	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.38	3	5	3	5	n	1.00	3	0	3	0	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.75	3	1	3	1	n	ENSMUSG00000044950.8	Pwwp2a	chr11	protein_coding	PWWP domain containing 2A
novel_NIR_2977	chr11	43577264	43595361	+	43573443	43595361	A5SS	ENSMUST00000061070.6	novel	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000044950.8	Pwwp2a	chr11	protein_coding	PWWP domain containing 2A
novel_NIR_2978	chr11	43596304	43606792	+	43596304	43607857	A3SS	ENSMUST00000094294.5	novel	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.33	1	2	1	2	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.67	2	1	2	1	y	0.20	1	4	1	4	n	ENSMUSG00000044950.8	Pwwp2a	chr11	protein_coding	PWWP domain containing 2A
novel_NIR_2979	chr11	43596304	43606792	+	43596304	43611048	A3SS	ENSMUST00000129229.2	novel	0.08	1	11	1	11	n	0.00	0	16	0	16	n	0.06	1	16	1	16	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.11	1	8	1	8	n	0.00	0	10	0	10	n	0.50	2	2	2	2	y	0.08	1	12	1	12	n	ENSMUSG00000044950.8	Pwwp2a	chr11	protein_coding	PWWP domain containing 2A
novel_NIR_2980	chr11	4369912	4370704	-	4362280	4370704	A3SS	ENSMUST00000109948.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020419.12	Hormad2	chr11	protein_coding	HORMA domain containing 2
novel_NIR_2981	chr11	43727684	43791921	-	43735213	43791921	A3SS&ES	ENSMUST00000067258.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	ENSMUSG00000050541.15	Adra1b	chr11	protein_coding	adrenergic receptor, alpha 1b
novel_NIR_2982	chr11	43727707	43791921	-	43735213	43791921	A3SS&ES	ENSMUST00000067258.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	5	0	5	0	y	ENSMUSG00000050541.15	Adra1b	chr11	protein_coding	adrenergic receptor, alpha 1b
novel_NIR_2983	chr11	43763032	43791921	-	43735213	43791921	A3SS	ENSMUST00000067258.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000050541.15	Adra1b	chr11	protein_coding	adrenergic receptor, alpha 1b
novel_NIR_2984	chr11	43783142	43791921	-	43735213	43791921	A3SS	ENSMUST00000067258.9	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000050541.15	Adra1b	chr11	protein_coding	adrenergic receptor, alpha 1b
novel_NIR_2985	chr11	43786840	43791921	-	43727687	43791921	A3SS	ENSMUST00000139906.2	novel	0.03	4	138	4	138	n	0.02	2	104	2	104	n	0.17	11	54	11	54	y	0.03	5	168	5	168	n	0.11	19	156	19	156	n	0.13	8	55	8	55	n	0.05	7	145	7	145	n	0.10	9	78	9	78	n	0.14	26	160	26	160	n	0.04	8	215	8	215	n	0.10	17	160	17	160	n	0.10	19	179	19	179	n	ENSMUSG00000050541.15	Adra1b	chr11	protein_coding	adrenergic receptor, alpha 1b
novel_NIR_2986	chr11	43786840	43791921	-	43735213	43791921	A3SS	ENSMUST00000067258.9	novel	1.00	4	0	4	0	y	1.00	2	0	2	0	y	0.92	11	1	11	1	y	1.00	5	0	5	0	y	1.00	19	0	19	0	y	1.00	8	0	8	0	y	1.00	7	0	7	0	y	1.00	9	0	9	0	y	1.00	26	0	26	0	y	1.00	8	0	8	0	y	1.00	17	0	17	0	y	1.00	19	0	19	0	y	ENSMUSG00000050541.15	Adra1b	chr11	protein_coding	adrenergic receptor, alpha 1b
novel_NIR_2987	chr11	44357821	44361255	-	44357838	44361255	A3SS	ENSMUST00000102795.4	novel	0.00	0	19	0	19	n	0.00	0	20	0	20	n	0.04	1	25	1	25	n	0.13	5	33	5	33	n	0.02	1	41	1	41	n	0.09	1	10	1	10	n	0.24	6	19	6	19	y	0.31	9	20	9	20	y	0.00	0	16	0	16	n	0.07	2	28	2	28	n	0.20	4	16	4	16	y	0.14	4	24	4	24	n	ENSMUSG00000041231.16	Ublcp1	chr11	protein_coding	ubiquitin-like domain containing CTD phosphatase 1
novel_NIR_2988	chr11	44409701	44415755	+	44410495	44415755	5pMXE	ENSMUST00000101327.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	ENSMUSG00000019189.14	Rnf145	chr11	protein_coding	ring finger protein 145
novel_NIR_2989	chr11	44409701	44415755	+	44411325	44415755	5pMXE	ENSMUST00000124959.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000019189.14	Rnf145	chr11	protein_coding	ring finger protein 145
novel_NIR_2990	chr11	46327836	46330721	+	46327836	46330633	A3SS&ES	ENSMUST00000140027.8	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.12	1	7	1	7	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.60	3	2	3	2	y	ENSMUSG00000020397.16	Med7	chr11	protein_coding	mediator complex subunit 7
novel_NIR_2991	chr11	46327836	46330721	+	46327836	46331390	A3SS	ENSMUST00000152119.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.43	3	4	3	4	y	ENSMUSG00000020397.16	Med7	chr11	protein_coding	mediator complex subunit 7
novel_NIR_2992	chr11	46328018	46330721	+	46328018	46330633	A3SS&ES	ENSMUST00000109231.2	novel	0.00	0	19	0	19	n	0.04	1	25	1	25	n	0.00	0	25	0	25	n	0.00	0	25	0	25	n	0.04	1	25	1	25	n	0.00	0	17	0	17	n	0.00	0	20	0	20	n	0.00	0	13	0	13	n	0.00	0	18	0	18	n	0.17	4	20	4	20	y	0.00	0	14	0	14	n	0.00	0	16	0	16	n	ENSMUSG00000020397.16	Med7	chr11	protein_coding	mediator complex subunit 7
novel_NIR_2993	chr11	46328018	46330721	+	46328018	46331390	A3SS	ENSMUST00000170928.8	novel	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	4	8	4	8	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000020397.16	Med7	chr11	protein_coding	mediator complex subunit 7
novel_NIR_2994	chr11	46330651	46330721	+	46330651	46330754	A3SS	ENSMUST00000140027.8	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000020397.16	Med7	chr11	protein_coding	mediator complex subunit 7
novel_NIR_2995	chr11	46330651	46330721	+	46330651	46331390	A3SS	ENSMUST00000109231.2	novel	0.80	4	1	4	1	y	-	-	-	-	-	-	1.00	2	0	2	0	y	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000020397.16	Med7	chr11	protein_coding	mediator complex subunit 7
novel_NIR_2996	chr11	46330651	46330732	+	46330651	46330754	A3SS	ENSMUST00000140027.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020397.16	Med7	chr11	protein_coding	mediator complex subunit 7
novel_NIR_2997	chr11	46330651	46330732	+	46330651	46331390	A3SS	ENSMUST00000109231.2	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020397.16	Med7	chr11	protein_coding	mediator complex subunit 7
novel_NIR_2998	chr11	4654712	4672358	+	4654721	4672358	A5SS	ENSMUST00000009220.5	novel	0.39	11	17	11	17	y	0.21	4	15	4	15	y	0.38	9	15	9	15	y	0.50	9	9	9	9	y	0.58	21	15	21	15	y	0.44	7	9	7	9	y	0.38	13	21	13	21	y	0.21	3	11	3	11	y	0.00	0	6	0	6	n	0.41	9	13	9	13	y	0.35	7	13	7	13	y	0.42	5	7	5	7	y	ENSMUSG00000009076.11	Zmat5	chr11	protein_coding	zinc finger, matrin type 5
novel_NIR_2999	chr11	46589432	46597762	-	46589435	46597762	A3SS	ENSMUST00000125008.2	novel	0.00	0	20	0	20	n	0.20	2	8	2	8	y	0.09	1	10	1	10	n	0.05	1	18	1	18	n	0.00	0	17	0	17	n	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.20	1	4	1	4	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.07	1	13	1	13	n	0.00	0	13	0	13	n	ENSMUSG00000040413.16	Timd2	chr11	protein_coding	T cell immunoglobulin and mucin domain containing 2
novel_NIR_3000	chr11	46597853	46641995	+	46625957	46641995	5pMXE	ENSMUST00000109224.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040405.14	Havcr1	chr11	protein_coding	hepatitis A virus cellular receptor 1
novel_NIR_3001	chr11	46597853	46641995	+	46631094	46641995	5pMXE	ENSMUST00000081819.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000040405.14	Havcr1	chr11	protein_coding	hepatitis A virus cellular receptor 1
novel_NIR_3002	chr11	46597853	46641995	+	46641498	46641995	5pMXE	ENSMUST00000109223.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040405.14	Havcr1	chr11	protein_coding	hepatitis A virus cellular receptor 1
novel_NIR_3003	chr11	46710871	46730088	+	46710871;46727901	46727855;46730088	ES	ENSMUST00000068877.7	novel	0.17	4	19.0	4	19;19	y	0.15	3	16.5	3	17;16	y	0.00	0	1.0	0	2;0	n	0.13	1	6.5	1	6;7	n	0.09	2	20.0	2	23;17	n	0.17	2	9.5	2	13;6	y	0.22	4	14.5	4	16;13	y	0.26	3	8.5	3	6;11	y	0.00	0	9.5	0	11;8	n	0.12	1	7.5	1	7;8	n	0.00	0	10.5	0	10;11	n	0.00	0	8.0	0	7;9	n	ENSMUSG00000055546.7	Timd4	chr11	protein_coding	T cell immunoglobulin and mucin domain containing 4
novel_NIR_3004	chr11	4718273	4730563	-	4718273	4732187	A5SS	ENSMUST00000109910.9	novel	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.29	2	5	2	5	y	0.12	1	7	1	7	n	0.00	0	5	0	5	n	0.50	3	3	3	3	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.40	2	3	2	3	y	0.33	1	2	1	2	n	ENSMUSG00000009073.17	Nf2	chr11	protein_coding	neurofibromin 2
novel_NIR_3005	chr11	4824103	4832638	+	4824103	4832901	A3SS	ENSMUST00000136552.8	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000034285.16	Nipsnap1	chr11	protein_coding	nipsnap homolog 1
novel_NIR_3006	chr11	4824103	4833423	+	4824103	4832901	A3SS&ES	ENSMUST00000136552.8	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.43	3	4	3	4	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034285.16	Nipsnap1	chr11	protein_coding	nipsnap homolog 1
novel_NIR_3007	chr11	4832711	4833368	+	4833171	4833368	A5SS&ES	ENSMUST00000136552.8	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.29	2	5	2	5	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.20	1	4	1	4	n	ENSMUSG00000034285.16	Nipsnap1	chr11	protein_coding	nipsnap homolog 1
novel_NIR_3008	chr11	4834116	4834208	+	4834116	4839097	A3SS	ENSMUST00000149603.8	novel	0.00	0	8	0	8	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.18	3	14	3	14	y	0.00	0	6	0	6	n	0.00	0	15	0	15	n	ENSMUSG00000034285.16	Nipsnap1	chr11	protein_coding	nipsnap homolog 1
novel_NIR_3009	chr11	4841486	4849791	+	4845378	4849791	5pMXE	ENSMUST00000101615.9	novel	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.00	0	16	0	16	n	0.00	0	22	0	22	n	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.15	2	11	2	11	y	0.00	0	10	0	10	n	0.00	0	14	0	14	n	ENSMUSG00000034274.12	Thoc5	chr11	protein_coding	THO complex 5
novel_NIR_3010	chr11	48706583	48706670	-	48700107	48706670	A3SS	ENSMUST00000138019.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000040365.15	Trim41	chr11	protein_coding	tripartite motif-containing 41
novel_NIR_3011	chr11	48729759	48730593	+	48729759	48736259	A3SS	ENSMUST00000109213.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040350.17	Trim7	chr11	protein_coding	tripartite motif-containing 7
novel_NIR_3012	chr11	48729759	48730593	+	48729759	48736263	A3SS	ENSMUST00000046903.6	novel	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.15	2	11	2	11	y	0.00	0	7	0	7	n	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	ENSMUSG00000040350.17	Trim7	chr11	protein_coding	tripartite motif-containing 7
novel_NIR_3013	chr11	48729759	48731065	+	48729759	48736259	A3SS	ENSMUST00000109213.9	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040350.17	Trim7	chr11	protein_coding	tripartite motif-containing 7
novel_NIR_3014	chr11	48729759	48731065	+	48729759	48736263	A3SS	ENSMUST00000046903.6	novel	0.11	1	8	1	8	n	0.00	0	13	0	13	n	0.21	3	11	3	11	y	0.00	0	7	0	7	n	0.14	1	6	1	6	n	0.40	4	6	4	6	y	0.18	3	14	3	14	y	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.15	2	11	2	11	y	0.00	0	8	0	8	n	0.00	0	3	0	3	n	ENSMUSG00000040350.17	Trim7	chr11	protein_coding	tripartite motif-containing 7
novel_NIR_3015	chr11	48977971	48986732	+	48977971	48985396	A3SS&ES	ENSMUST00000214804.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000078920.4	Ifi47	chr11	protein_coding	interferon gamma inducible protein 47
novel_NIR_3016	chr11	48977971	48986732	+	48977971	49008448	A3SS	ENSMUST00000056759.11	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000040328.17	Olfr56	chr11	protein_coding	olfactory receptor 56
novel_NIR_3017	chr11	48977971	48986732	+	48977971	49015111	A3SS	ENSMUST00000203149.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000040328.17	Olfr56	chr11	protein_coding	olfactory receptor 56
novel_NIR_3018	chr11	48978137	48986216	+	48979196	48986216	5pMXE	ENSMUST00000213728.2	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	8	0	8	0	y	1.00	3	0	3	0	y	1.00	8	0	8	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	ENSMUSG00000078920.4	Ifi47	chr11	protein_coding	interferon gamma inducible protein 47
novel_NIR_3019	chr11	48978137	48986216	+	48982796	48986216	A5SS&ES	ENSMUST00000152914.2	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	8	0	8	0	y	1.00	3	0	3	0	y	1.00	8	0	8	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	ENSMUSG00000078920.4	Ifi47	chr11	protein_coding	interferon gamma inducible protein 47
novel_NIR_3020	chr11	48978137	48986216	+	48985445	48986216	A5SS&ES	ENSMUST00000214804.2	novel	0.75	3	1	3	1	y	1.00	1	0	1	0	n	1.00	8	0	8	0	y	1.00	3	0	3	0	y	1.00	8	0	8	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	0.75	3	1	3	1	y	ENSMUSG00000078920.4	Ifi47	chr11	protein_coding	interferon gamma inducible protein 47
novel_NIR_3021	chr11	49005376	49010522	-	49005376	49005649	5pMXE	ENSMUST00000109201.2	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000047511.7	Olfr1396	chr11	protein_coding	olfactory receptor 1396
novel_NIR_3022	chr11	49005376	49010522	-	49005376	49005653	5pMXE	ENSMUST00000060398.3	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000047511.7	Olfr1396	chr11	protein_coding	olfactory receptor 1396
novel_NIR_3023	chr11	49105145	49105353	+	49104469	49105353	A5SS	ENSMUST00000150284.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000046311.14	Zfp62	chr11	protein_coding	zinc finger protein 62
novel_NIR_3024	chr11	49136444	49148614	+	49136444	49151398	A3SS	ENSMUST00000081794.7	novel	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.16	3	16	3	16	y	0.00	0	11	0	11	n	0.00	0	28	0	28	n	0.00	0	17	0	17	n	0.03	1	29	1	29	n	0.09	1	10	1	10	n	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.00	0	18	0	18	n	0.07	1	14	1	14	n	ENSMUSG00000020346.17	Mgat1	chr11	protein_coding	mannoside acetylglucosaminyltransferase 1
novel_NIR_3025	chr11	49136444	49148614	+	49147657	49148614	5pMXE	ENSMUST00000135314.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000020346.17	Mgat1	chr11	protein_coding	mannoside acetylglucosaminyltransferase 1
novel_NIR_3026	chr11	49136855	49142377	+	49138358	49142377	5pMXE	ENSMUST00000155806.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000020346.17	Mgat1	chr11	protein_coding	mannoside acetylglucosaminyltransferase 1
novel_NIR_3027	chr11	49136855	49142377	+	49140036	49142377	5pMXE	ENSMUST00000148962.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	ENSMUSG00000020346.17	Mgat1	chr11	protein_coding	mannoside acetylglucosaminyltransferase 1
novel_NIR_3028	chr11	49142501	49145707	+	49142501	49148614	A3SS	ENSMUST00000149406.2	novel	0.62	8	5	8	5	y	0.80	4	1	4	1	y	0.47	8	9	8	9	y	0.50	6	6	6	6	n	0.67	12	6	12	6	n	0.62	8	5	8	5	y	0.38	3	5	3	5	y	0.45	5	6	5	6	n	0.40	2	3	2	3	y	0.67	8	4	8	4	n	0.82	9	2	9	2	y	0.54	7	6	7	6	y	ENSMUSG00000020346.17	Mgat1	chr11	protein_coding	mannoside acetylglucosaminyltransferase 1
novel_NIR_3029	chr11	49142501	49148619	+	49142501	49148614	A3SS	ENSMUST00000149406.2	novel	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.40	2	3	2	3	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	ENSMUSG00000020346.17	Mgat1	chr11	protein_coding	mannoside acetylglucosaminyltransferase 1
novel_NIR_3030	chr11	49142501;49145875	49145707;49148614	+	49142501	49148614	cassetteExon	ENSMUST00000149406.2	novel	0.44	4.0	5	8;0	5	n	0.67	2.0	1	4;0	1	n	0.31	4.0	9	8;0	9	n	0.37	3.5	6	6;1	6	n	0.54	7.0	6	12;2	6	y	0.44	4.0	5	8;0	5	n	0.23	1.5	5	3;0	5	n	0.33	3.0	6	5;1	6	n	0.25	1.0	3	2;0	3	n	0.53	4.5	4	8;1	4	n	0.69	4.5	2	9;0	2	n	0.37	3.5	6	7;0	6	n	ENSMUSG00000020346.17	Mgat1	chr11	protein_coding	mannoside acetylglucosaminyltransferase 1
novel_NIR_3031	chr11	49145875	49148614	+	49147657	49148614	5pMXE	ENSMUST00000135314.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020346.17	Mgat1	chr11	protein_coding	mannoside acetylglucosaminyltransferase 1
novel_NIR_3032	chr11	49145875	49151398	+	49136444	49151398	A5SS	ENSMUST00000081794.7	novel	0.12	2	15	2	15	n	0.00	0	13	0	13	n	0.33	8	16	8	16	y	0.27	4	11	4	11	y	0.12	4	28	4	28	n	0.00	0	17	0	17	n	0.00	0	29	0	29	n	0.00	0	10	0	10	n	0.18	3	14	3	14	y	0.37	10	17	10	17	y	0.22	5	18	5	18	y	0.22	4	14	4	14	y	ENSMUSG00000020346.17	Mgat1	chr11	protein_coding	mannoside acetylglucosaminyltransferase 1
novel_NIR_3033	chr11	49145875	49151398	+	49138358	49151398	A5SS	ENSMUST00000109194.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	8	0	8	0	y	1.00	4	0	4	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	10	0	10	0	y	1.00	5	0	5	0	y	1.00	4	0	4	0	y	ENSMUSG00000020346.17	Mgat1	chr11	protein_coding	mannoside acetylglucosaminyltransferase 1
novel_NIR_3034	chr11	49145875	49151398	+	49141482	49151398	A5SS	ENSMUST00000129588.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	8	0	8	0	y	1.00	4	0	4	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	10	0	10	0	y	1.00	5	0	5	0	y	1.00	4	0	4	0	y	ENSMUSG00000020346.17	Mgat1	chr11	protein_coding	mannoside acetylglucosaminyltransferase 1
novel_NIR_3035	chr11	49145875	49151398	+	49145042	49151398	A5SS	ENSMUST00000129541.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	8	0	8	0	y	1.00	4	0	4	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	10	0	10	0	y	1.00	5	0	5	0	y	1.00	4	0	4	0	y	ENSMUSG00000020346.17	Mgat1	chr11	protein_coding	mannoside acetylglucosaminyltransferase 1
novel_NIR_3036	chr11	4937051	4952968	+	4937051	4962882	A3SS	ENSMUST00000137292.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000009090.18	Ap1b1	chr11	protein_coding	adaptor protein complex AP-1, beta 1 subunit
novel_NIR_3037	chr11	4937051;4953127	4952968;4959530	+	4937051	4959530	cassetteExon	ENSMUST00000109897.8	novel	0.07	3.0	37	1;5	37	n	0.08	2.0	23	0;4	23	n	0.19	7.5	32	3;12	32	y	0.09	4.5	45	2;7	45	n	0.16	10.5	55	4;17	55	y	0.06	1.5	22	1;2	22	n	0.05	2.5	50	0;5	50	n	0.11	5.0	39	3;7	39	n	0.06	1.5	24	0;3	24	n	0.04	2.0	43	1;3	43	n	0.05	1.5	28	0;3	28	n	0.03	1.5	48	0;3	48	n	ENSMUSG00000009090.18	Ap1b1	chr11	protein_coding	adaptor protein complex AP-1, beta 1 subunit
novel_NIR_3038	chr11	4953127	4959530	+	4937051	4959530	A5SS	ENSMUST00000109897.8	novel	0.12	5	37	5	37	n	0.15	4	23	4	23	y	0.27	12	32	12	32	n	0.13	7	45	7	45	n	0.24	17	55	17	55	n	0.08	2	22	2	22	n	0.09	5	50	5	50	n	0.15	7	39	7	39	n	0.11	3	24	3	24	n	0.07	3	43	3	43	n	0.10	3	28	3	28	n	0.06	3	48	3	48	n	ENSMUSG00000009090.18	Ap1b1	chr11	protein_coding	adaptor protein complex AP-1, beta 1 subunit
novel_NIR_3039	chr11	49763726	49769109	+	49763726	49764663	A3SS&ES	ENSMUST00000109179.9	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.08	1	12	1	12	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.43	3	4	3	4	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.10	1	9	1	9	n	ENSMUSG00000020366.19	Mapk9	chr11	protein_coding	mitogen-activated protein kinase 9
novel_NIR_3040	chr11	49773026	49774094	+	49773026	49773969	A3SS	ENSMUST00000109179.9	novel	0.00	0	31	0	31	n	0.03	1	30	1	30	n	0.18	4	18	4	18	y	0.00	0	21	0	21	n	0.00	0	22	0	22	n	0.00	0	23	0	23	n	0.00	0	35	0	35	n	0.00	0	14	0	14	n	0.04	1	26	1	26	n	0.00	0	35	0	35	n	0.00	0	24	0	24	n	0.04	1	25	1	25	n	ENSMUSG00000020366.19	Mapk9	chr11	protein_coding	mitogen-activated protein kinase 9
novel_NIR_3041	chr11	49986807	49990076	+	49986807	49995376	A3SS	ENSMUST00000054684.14	novel	0.02	1	47	1	47	n	0.00	0	60	0	60	n	0.13	8	54	8	54	n	0.02	1	42	1	42	n	0.01	1	68	1	68	n	0.16	5	26	5	26	y	0.01	1	89	1	89	n	0.08	4	45	4	45	n	0.06	2	32	2	32	n	0.03	2	71	2	71	n	0.10	6	52	6	52	n	0.01	1	71	1	71	n	ENSMUSG00000020376.18	Rnf130	chr11	protein_coding	ring finger protein 130
novel_NIR_3042	chr11	49986807	49990076	+	49986807	50009872	A3SS	ENSMUST00000238748.2	novel	0.04	1	24	1	24	n	0.00	0	14	0	14	n	0.29	8	20	8	20	y	0.08	1	12	1	12	n	0.05	1	19	1	19	n	0.36	5	9	5	9	y	0.04	1	26	1	26	n	0.17	4	19	4	19	y	0.20	2	8	2	8	y	0.09	2	20	2	20	n	0.23	6	20	6	20	y	0.07	1	14	1	14	n	ENSMUSG00000020376.18	Rnf130	chr11	protein_coding	ring finger protein 130
novel_NIR_3043	chr11	49986807	50000535	+	49986807	50009872	A3SS	ENSMUST00000238748.2	novel	0.00	0	24	0	24	n	0.00	0	14	0	14	n	0.05	1	20	1	20	n	0.08	1	12	1	12	n	0.00	0	19	0	19	n	0.18	2	9	2	9	y	0.00	0	26	0	26	n	0.00	0	19	0	19	n	0.00	0	8	0	8	n	0.05	1	20	1	20	n	0.00	0	20	0	20	n	0.00	0	14	0	14	n	ENSMUSG00000020376.18	Rnf130	chr11	protein_coding	ring finger protein 130
novel_NIR_3044	chr11	50025075	50026652	+	50023014	50026652	A5SS	ENSMUST00000147628.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000036644.16	Tbc1d9b	chr11	protein_coding	TBC1 domain family, member 9B
novel_NIR_3045	chr11	50025075	50026652	+	50026516	50026652	5pMXE	ENSMUST00000126758.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036644.16	Tbc1d9b	chr11	protein_coding	TBC1 domain family, member 9B
novel_NIR_3046	chr11	50025302	50030283	-	50025302	50025757	5pMXE	ENSMUST00000144990.2	novel	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.62	5	3	5	3	y	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000085192.2	Gm12195	chr11	lncRNA	predicted gene 12195
novel_NIR_3047	chr11	50025302	50030309	-	50025302	50025757	5pMXE	ENSMUST00000144990.2	novel	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.33	1	2	1	2	n	ENSMUSG00000085192.2	Gm12195	chr11	lncRNA	predicted gene 12195
novel_NIR_3048	chr11	50036082	50038848	+	50036082	50040529	A3SS	ENSMUST00000137852.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036644.16	Tbc1d9b	chr11	protein_coding	TBC1 domain family, member 9B
novel_NIR_3049	chr11	50036082	50038848	+	50037467	50038848	5pMXE	ENSMUST00000148887.2	novel	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036644.16	Tbc1d9b	chr11	protein_coding	TBC1 domain family, member 9B
novel_NIR_3050	chr11	50054723	50059523	+	50054723;50059052	50058996;50059523	ES	ENSMUST00000093138.13	novel	0.18	10	46.0	10	55;37	y	0.09	5	49.0	5	42;56	n	0.08	4	43.5	4	44;43	n	0.21	15	57.5	15	66;49	y	0.16	12	65.0	12	66;64	y	0.06	2	29.0	2	31;27	n	0.10	7	65.5	7	63;68	n	0.00	0	44.5	0	41;48	n	0.15	8	45.5	8	47;44	y	0.11	10	85.0	10	79;91	n	0.20	14	56.5	14	52;61	y	0.09	8	80.5	8	85;76	n	ENSMUSG00000036644.16	Tbc1d9b	chr11	protein_coding	TBC1 domain family, member 9B
novel_NIR_3051	chr11	50093415	50093641	-	50093256	50093641	A3SS	ENSMUST00000136936.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	11	0	11	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	11	0	11	0	y	1.00	23	0	23	0	y	1.00	19	0	19	0	y	-	-	-	-	-	-	1.00	22	0	22	0	y	ENSMUSG00000015837.16	Sqstm1	chr11	protein_coding	sequestosome 1
novel_NIR_3052	chr11	50093433	50093641	-	50093256	50093641	A3SS	ENSMUST00000136936.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000015837.16	Sqstm1	chr11	protein_coding	sequestosome 1
novel_NIR_3053	chr11	50101597	50121507	+	50101857	50121507	5pMXE	ENSMUST00000147468.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036620.15	Mgat4b	chr11	protein_coding	mannoside acetylglucosaminyltransferase 4, isoenzyme B
novel_NIR_3054	chr11	5011294	5012155	-	5006689	5012155	A3SS	ENSMUST00000122886.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000034201.14	Gas2l1	chr11	protein_coding	growth arrest-specific 2 like 1
novel_NIR_3055	chr11	5015012	5015215	-	5014478	5015215	A3SS	ENSMUST00000122886.8	novel	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.18	5	23	5	23	y	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	ENSMUSG00000034201.14	Gas2l1	chr11	protein_coding	growth arrest-specific 2 like 1
novel_NIR_3056	chr11	5015012	5015215	-	5015015	5015215	A3SS	ENSMUST00000152257.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.42	5	7	5	7	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000034201.14	Gas2l1	chr11	protein_coding	growth arrest-specific 2 like 1
novel_NIR_3057	chr11	50270791	50273776	+	50270791	50271653	3pMXE	ENSMUST00000129631.8	novel	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000007850.17	Hnrnph1	chr11	protein_coding	heterogeneous nuclear ribonucleoprotein H1
novel_NIR_3058	chr11	50270791	50273776	+	50270791	50273364	A3SS&ES	ENSMUST00000150153.8	novel	0.00	0	8	0	8	n	0.00	0	17	0	17	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	18	0	18	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.24	5	16	5	16	y	0.00	0	3	0	3	n	0.00	0	10	0	10	n	ENSMUSG00000007850.17	Hnrnph1	chr11	protein_coding	heterogeneous nuclear ribonucleoprotein H1
novel_NIR_3059	chr11	50274557	50274658	+	50274141	50274658	A5SS	ENSMUST00000150657.2	novel	0.00	0	2	0	2	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000007850.17	Hnrnph1	chr11	protein_coding	heterogeneous nuclear ribonucleoprotein H1
novel_NIR_3060	chr11	50274590	50275471	+	50274596	50275471	A5SS	ENSMUST00000156642.8	novel	0.00	0	16	0	16	n	0.07	1	13	1	13	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.00	0	21	0	21	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.20	1	4	1	4	n	0.22	2	7	2	7	y	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	ENSMUSG00000007850.17	Hnrnph1	chr11	protein_coding	heterogeneous nuclear ribonucleoprotein H1
novel_NIR_3061	chr11	50274590	50275471	+	50274717	50275471	5pMXE	ENSMUST00000140056.2	novel	0.00	0	4	0	4	n	0.06	1	17	1	17	n	0.00	0	28	0	28	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.00	0	14	0	14	n	0.17	1	5	1	5	n	0.20	2	8	2	8	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000007850.17	Hnrnph1	chr11	protein_coding	heterogeneous nuclear ribonucleoprotein H1
novel_NIR_3062	chr11	5028579	5028920	-	5028579	5032284	A5SS	ENSMUST00000073308.11	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.80	4	1	4	1	y	0.00	0	2	0	2	n	0.83	5	1	5	1	y	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.57	4	3	4	3	y	1.00	4	0	4	0	y	ENSMUSG00000009079.17	Ewsr1	chr11	protein_coding	Ewing sarcoma breakpoint region 1
novel_NIR_3063	chr11	5029522	5032253	-	5028952	5032253	A3SS	ENSMUST00000150168.8	novel	0.60	6	4	6	4	y	0.86	12	2	12	2	y	0.93	25	2	25	2	y	0.70	7	3	7	3	y	0.77	10	3	10	3	y	1.00	7	0	7	0	y	0.72	13	5	13	5	y	0.67	4	2	4	2	y	0.67	6	3	6	3	y	0.58	7	5	7	5	y	0.81	17	4	17	4	y	0.80	8	2	8	2	y	ENSMUSG00000009079.17	Ewsr1	chr11	protein_coding	Ewing sarcoma breakpoint region 1
novel_NIR_3064	chr11	5029522	5032253	-	5029519	5032253	A3SS	ENSMUST00000079949.13	novel	0.16	6	32	6	32	y	0.25	12	36	12	36	y	0.31	25	55	25	55	y	0.14	7	42	7	42	n	0.14	10	62	10	62	n	0.20	7	28	7	28	y	0.23	13	43	13	43	y	0.19	4	17	4	17	y	0.12	6	43	6	43	n	0.13	7	47	7	47	n	0.31	17	37	17	37	y	0.13	8	52	8	52	n	ENSMUSG00000009079.17	Ewsr1	chr11	protein_coding	Ewing sarcoma breakpoint region 1
novel_NIR_3065	chr11	5029522	5032253	-	5030688	5032253	3pMXE	ENSMUST00000093365.12	novel	1.00	6	0	6	0	y	1.00	12	0	12	0	y	1.00	25	0	25	0	y	1.00	7	0	7	0	y	1.00	10	0	10	0	y	1.00	7	0	7	0	y	1.00	13	0	13	0	y	1.00	4	0	4	0	y	1.00	6	0	6	0	y	1.00	7	0	7	0	y	1.00	17	0	17	0	y	1.00	8	0	8	0	y	ENSMUSG00000009079.17	Ewsr1	chr11	protein_coding	Ewing sarcoma breakpoint region 1
novel_NIR_3066	chr11	5041985	5043681	-	5043568	5043681	3pMXE	ENSMUST00000151847.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	9	0	9	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000009079.17	Ewsr1	chr11	protein_coding	Ewing sarcoma breakpoint region 1
novel_NIR_3067	chr11	5050226	5050385	+	5049898	5050385	A5SS	ENSMUST00000134267.8	novel	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.50	4	4	4	4	y	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	ENSMUSG00000034175.14	Rhbdd3	chr11	protein_coding	rhomboid domain containing 3
novel_NIR_3068	chr11	5050226	5050385	+	5050226	5050397	A3SS	ENSMUST00000109878.9	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.57	4	3	4	3	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000034175.14	Rhbdd3	chr11	protein_coding	rhomboid domain containing 3
novel_NIR_3069	chr11	5054404	5055471	+	5054404	5055181	A3SS&ES	ENSMUST00000036320.12	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.18	2	9	2	9	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000034175.14	Rhbdd3	chr11	protein_coding	rhomboid domain containing 3
novel_NIR_3070	chr11	5055313	5055405	+	5055313	5055433	A3SS	ENSMUST00000036320.12	novel	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.40	2	3	2	3	y	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	ENSMUSG00000034175.14	Rhbdd3	chr11	protein_coding	rhomboid domain containing 3
novel_NIR_3071	chr11	5055313	5055471	+	5055313	5055433	A3SS	ENSMUST00000036320.12	novel	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.25	2	6	2	6	y	0.12	1	7	1	7	n	ENSMUSG00000034175.14	Rhbdd3	chr11	protein_coding	rhomboid domain containing 3
novel_NIR_3072	chr11	50774100	50774512	-	50774103	50774512	A3SS	ENSMUST00000050595.13	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.75	3	1	3	1	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000048728.16	Zfp454	chr11	protein_coding	zinc finger protein 454
novel_NIR_3073	chr11	50792118	50796917	-	50792118	50796433	A5SS&ES	ENSMUST00000109128.8	novel	1.00	3	0	3	0	y	1.00	6	0	6	0	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	7	0	7	0	y	1.00	1	0	1	0	n	1.00	6	0	6	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	9	0	9	0	y	1.00	6	0	6	0	y	1.00	1	0	1	0	n	ENSMUSG00000049321.18	Zfp2	chr11	protein_coding	zinc finger protein 2
novel_NIR_3074	chr11	50792118	50796917	-	50792118	50796913	A5SS	ENSMUST00000109129.8	novel	1.00	3	0	3	0	y	1.00	6	0	6	0	y	0.67	2	1	2	1	y	0.80	4	1	4	1	y	1.00	7	0	7	0	y	1.00	1	0	1	0	n	0.86	6	1	6	1	y	0.67	2	1	2	1	y	1.00	2	0	2	0	y	0.69	9	4	9	4	y	1.00	6	0	6	0	y	0.33	1	2	1	2	n	ENSMUSG00000049321.18	Zfp2	chr11	protein_coding	zinc finger protein 2
novel_NIR_3075	chr11	50818849	50819391	-	50814667	50819391	A3SS	ENSMUST00000109124.10	novel	0.33	3	6	3	6	y	0.78	7	2	7	2	y	1.00	4	0	4	0	y	0.40	2	3	2	3	y	0.52	12	11	12	11	y	0.33	1	2	1	2	n	0.65	13	7	13	7	y	0.00	0	2	0	2	n	0.75	3	1	3	1	y	0.29	2	5	2	5	y	1.00	4	0	4	0	y	0.33	2	4	2	4	y	ENSMUSG00000020335.14	Zfp354b	chr11	protein_coding	zinc finger protein 354B
novel_NIR_3076	chr11	51144821	51145186	-	51144879	51145186	A3SS	ENSMUST00000065950.10	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	ENSMUSG00000045942.14	BC049762	chr11	protein_coding	cDNA sequence BC049762
novel_NIR_3077	chr11	51158158	51161364	+	51158158	51158992	A3SS&ES	ENSMUST00000130641.8	novel	0.35	7	13	7	13	y	0.12	1	7	1	7	n	0.25	9	27	9	27	y	0.30	3	7	3	7	y	0.52	11	10	11	10	y	0.09	1	10	1	10	n	0.37	10	17	10	17	y	0.33	4	8	4	8	y	0.50	8	8	8	8	y	0.59	10	7	10	7	y	0.40	6	9	6	9	y	0.42	8	11	8	11	y	ENSMUSG00000020385.17	Clk4	chr11	protein_coding	CDC like kinase 4
novel_NIR_3078	chr11	51158158	51161364	+	51158158	51162627	A3SS	ENSMUST00000093132.13	novel	0.12	7	49	7	49	n	0.04	1	27	1	27	n	0.15	9	51	9	51	y	0.05	3	53	3	53	n	0.16	11	57	11	57	y	0.03	1	28	1	28	n	0.18	10	45	10	45	y	0.11	4	32	4	32	n	0.20	8	33	8	33	y	0.14	10	64	10	64	n	0.14	6	38	6	38	n	0.13	8	53	8	53	n	ENSMUSG00000020385.17	Clk4	chr11	protein_coding	CDC like kinase 4
novel_NIR_3079	chr11	51158158	51161364	+	51158158;51159058	51158992;51161364	ES	ENSMUST00000126131.8	novel	0.45	7	8.5	7	13;4	y	0.18	1	4.5	1	7;2	n	0.34	9	17.5	9	27;8	y	0.38	3	5.0	3	7;3	y	0.61	11	7.0	11	10;4	y	0.11	1	8.0	1	10;6	n	0.53	10	9.0	10	17;1	y	0.40	4	6.0	4	8;4	y	0.64	8	4.5	8	8;1	y	0.69	10	4.5	10	7;2	y	0.57	6	4.5	6	9;0	y	0.53	8	7.0	8	11;3	y	ENSMUSG00000020385.17	Clk4	chr11	protein_coding	CDC like kinase 4
novel_NIR_3080	chr11	51162849	51163908	+	51162849	51164387	A3SS	ENSMUST00000126131.8	novel	0.08	1	11	1	11	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.20	2	8	2	8	y	0.00	0	14	0	14	n	0.08	1	11	1	11	n	0.00	0	23	0	23	n	0.00	0	10	0	10	n	0.00	0	20	0	20	n	0.12	1	7	1	7	n	0.00	0	14	0	14	n	0.14	1	6	1	6	n	ENSMUSG00000020385.17	Clk4	chr11	protein_coding	CDC like kinase 4
novel_NIR_3081	chr11	51482946	51484431	+	51483854	51484431	A5SS&ES	ENSMUST00000101250.12	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020359.14	Phykpl	chr11	protein_coding	5-phosphohydroxy-L-lysine phospholyase
novel_NIR_3082	chr11	5148394	5149553	-	5148394	5149502	A5SS	ENSMUST00000020662.15	novel	0.06	1	15	1	15	n	0.08	1	11	1	11	n	0.00	0	23	0	23	n	0.18	3	14	3	14	y	0.11	3	24	3	24	n	0.00	0	12	0	12	n	0.04	1	25	1	25	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.14	3	18	3	18	n	0.08	1	11	1	11	n	0.11	2	16	2	16	n	ENSMUSG00000020393.17	Kremen1	chr11	protein_coding	kringle containing transmembrane protein 1
novel_NIR_3083	chr11	51576919	51578303	-	51576919	51579517	A5SS	ENSMUST00000109098.2	novel	0.00	0	1	0	1	n	0.38	3	5	3	5	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000007777.10	0610009B22Rik	chr11	protein_coding	RIKEN cDNA 0610009B22 gene
novel_NIR_3084	chr11	51576919	51579187	-	51576919	51579517	A5SS	ENSMUST00000109098.2	novel	0.50	1	1	1	1	n	0.29	2	5	2	5	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	0.75	3	1	3	1	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000007777.10	0610009B22Rik	chr11	protein_coding	RIKEN cDNA 0610009B22 gene
novel_NIR_3085	chr11	51576919	51579370	-	51576919	51579517	A5SS	ENSMUST00000109098.2	novel	0.75	3	1	3	1	y	0.00	0	5	0	5	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000007777.10	0610009B22Rik	chr11	protein_coding	RIKEN cDNA 0610009B22 gene
novel_NIR_3086	chr11	51576919	51579809	-	51576919	51579517	5pMXE	ENSMUST00000109098.2	novel	0.50	1	1	1	1	n	0.17	1	5	1	5	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	6	0	6	0	y	1.00	2	0	2	0	y	1.00	6	0	6	0	y	ENSMUSG00000007777.10	0610009B22Rik	chr11	protein_coding	RIKEN cDNA 0610009B22 gene
novel_NIR_3087	chr11	5158563	5159939	-	5152029	5159939	A3SS	ENSMUST00000020662.15	novel	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	22	0	22	n	0.00	0	27	0	27	n	0.00	0	10	0	10	n	0.00	0	30	0	30	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	23	0	23	n	0.00	0	2	0	2	n	0.27	3	8	3	8	y	ENSMUSG00000020393.17	Kremen1	chr11	protein_coding	kringle containing transmembrane protein 1
novel_NIR_3088	chr11	5158563	5159939	-	5157698	5159939	A3SS	ENSMUST00000151978.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000020393.17	Kremen1	chr11	protein_coding	kringle containing transmembrane protein 1
novel_NIR_3089	chr11	51891188	51892896	-	51891188	51891504	5pMXE	ENSMUST00000109086.8	novel	0.00	0	19	0	19	n	0.00	0	24	0	24	n	0.00	0	17	0	17	n	0.04	1	24	1	24	n	0.00	0	22	0	22	n	0.12	1	7	1	7	n	0.05	2	36	2	36	n	0.00	0	17	0	17	n	0.00	0	25	0	25	n	0.10	3	26	3	26	n	0.18	4	18	4	18	y	0.00	0	28	0	28	n	ENSMUSG00000020390.13	Ube2b	chr11	protein_coding	ubiquitin-conjugating enzyme E2B
novel_NIR_3090	chr11	52127760	52128365	+	52127760	52128211	A3SS&ES	ENSMUST00000147684.8	novel	0.00	0	4	0	4	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	ENSMUSG00000036309.15	Skp1	chr11	protein_coding	S-phase kinase-associated protein 1
novel_NIR_3091	chr11	52127760	52128365	+	52127760	52129078	A3SS	ENSMUST00000093121.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000036309.15	Skp1	chr11	protein_coding	S-phase kinase-associated protein 1
novel_NIR_3092	chr11	52128299	52133232	+	52128299	52133414	A3SS	ENSMUST00000147684.8	novel	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.29	2	5	2	5	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000036309.15	Skp1	chr11	protein_coding	S-phase kinase-associated protein 1
novel_NIR_3093	chr11	52128299	52133232	+	52129177	52133232	A5SS&ES	ENSMUST00000116595.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036309.15	Skp1	chr11	protein_coding	S-phase kinase-associated protein 1
novel_NIR_3094	chr11	52133487	52136812	+	52133487	52135808	3pMXE	ENSMUST00000166537.8	novel	0.15	2	11	2	11	y	0.25	1	3	1	3	n	0.04	1	22	1	22	n	0.33	3	6	3	6	y	0.00	0	11	0	11	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	22	0	22	n	0.08	1	11	1	11	n	0.11	2	16	2	16	n	ENSMUSG00000036309.15	Skp1	chr11	protein_coding	S-phase kinase-associated protein 1
novel_NIR_3095	chr11	52144789	52145926	-	52144789	52147085	A5SS	ENSMUST00000086844.10	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.20	2	8	2	8	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	6	0	6	n	ENSMUSG00000000782.17	Tcf7	chr11	protein_coding	transcription factor 7, T cell specific
novel_NIR_3096	chr11	52148630	52151358	-	52148630;52149772	52149680;52151358	ES	ENSMUST00000086844.10	novel	0.00	0	0.5	0	0;1	n	1.00	3	0.0	3	0;0	y	1.00	2	0.0	2	0;0	y	0.00	0	0.5	0	0;1	n	0.73	4	1.5	4	3;0	y	1.00	1	0.0	1	0;0	n	0.83	5	1.0	5	2;0	y	-	-	-	-	-	-	0.91	5	0.5	5	1;0	y	0.94	8	0.5	8	1;0	y	-	-	-	-	-	-	1.00	3	0.0	3	0;0	y	ENSMUSG00000000782.17	Tcf7	chr11	protein_coding	transcription factor 7, T cell specific
novel_NIR_3097	chr11	52276560	52277209	+	52276560	52277194	A3SS	ENSMUST00000125694.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020402.12	Vdac1	chr11	protein_coding	voltage-dependent anion channel 1
novel_NIR_3098	chr11	5239737	5243050	-	5239737	5288638	A5SS	ENSMUST00000109867.8	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	15	0	15	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.18	2	9	2	9	y	0.00	0	12	0	12	n	0.00	0	6	0	6	n	ENSMUSG00000041961.15	Znrf3	chr11	protein_coding	zinc and ring finger 3
novel_NIR_3099	chr11	5239737	5267633	-	5239737	5288638	A5SS	ENSMUST00000109867.8	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.15	2	11	2	11	y	0.00	0	8	0	8	n	0.00	0	15	0	15	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	ENSMUSG00000041961.15	Znrf3	chr11	protein_coding	zinc and ring finger 3
novel_NIR_3100	chr11	5267699	5288638	-	5239737	5288638	A3SS	ENSMUST00000109867.8	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.20	2	8	2	8	y	0.06	1	15	1	15	n	0.20	1	4	1	4	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.25	3	9	3	9	y	0.00	0	12	0	12	n	0.00	0	6	0	6	n	ENSMUSG00000041961.15	Znrf3	chr11	protein_coding	zinc and ring finger 3
novel_NIR_3101	chr11	5269380	5288638	-	5239737	5288638	A3SS	ENSMUST00000109867.8	novel	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	15	0	15	n	0.56	5	4	5	4	y	0.19	3	13	3	13	y	0.00	0	7	0	7	n	0.33	1	2	1	2	n	0.40	6	9	6	9	y	0.00	0	12	0	12	n	0.25	2	6	2	6	y	ENSMUSG00000041961.15	Znrf3	chr11	protein_coding	zinc and ring finger 3
novel_NIR_3102	chr11	5287028	5288638	-	5239737	5288638	A3SS	ENSMUST00000109867.8	novel	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	15	0	15	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	ENSMUSG00000041961.15	Znrf3	chr11	protein_coding	zinc and ring finger 3
novel_NIR_3103	chr11	53222529	53223129	+	53222598	53223129	A5SS	ENSMUST00000141585.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000018239.10	Zcchc10	chr11	protein_coding	zinc finger, CCHC domain containing 10
novel_NIR_3104	chr11	53288696	53289091	+	53288696	53290416	A3SS	ENSMUST00000130152.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	ENSMUSG00000049470.14	Aff4	chr11	protein_coding	AF4/FMR2 family, member 4
novel_NIR_3105	chr11	53319977	53321227	-	53319977	53320956	A5SS	ENSMUST00000109019.8	novel	0.43	3	4	3	4	y	0.00	0	4	0	4	n	0.00	0	19	0	19	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.29	2	5	2	5	y	0.00	0	9	0	9	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.12	1	7	1	7	n	ENSMUSG00000044894.15	Uqcrq	chr11	protein_coding	ubiquinol-cytochrome c reductase, complex III subunit VII
novel_NIR_3106	chr11	53319977	53321359	-	53319977	53320956	5pMXE	ENSMUST00000109019.8	novel	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.00	0	19	0	19	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	1.00	7	0	7	0	y	0.00	0	4	0	4	n	0.00	0	7	0	7	n	ENSMUSG00000044894.15	Uqcrq	chr11	protein_coding	ubiquinol-cytochrome c reductase, complex III subunit VII
novel_NIR_3107	chr11	53355157	53355314	+	53355157	53356323	A3SS	ENSMUST00000018531.12	novel	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.17	1	5	1	5	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.67	4	2	4	2	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000018387.13	Shroom1	chr11	protein_coding	shroom family member 1
novel_NIR_3108	chr11	53357420	53357590	+	53357477	53357590	A5SS	ENSMUST00000109013.9	novel	0.08	6	70	6	70	n	0.24	23	71	23	71	y	0.13	22	145	22	145	n	0.18	12	53	12	53	y	0.08	6	73	6	73	n	0.14	6	36	6	36	n	0.09	9	94	9	94	n	0.21	11	42	11	42	y	0.08	7	79	7	79	n	0.14	15	93	15	93	n	0.17	18	87	18	87	y	0.19	15	63	15	63	y	ENSMUSG00000018387.13	Shroom1	chr11	protein_coding	shroom family member 1
novel_NIR_3109	chr11	53579843	53582940	-	53577134	53582940	A3SS	ENSMUST00000124352.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000020380.17	Rad50	chr11	protein_coding	RAD50 double strand break repair protein
novel_NIR_3110	chr11	53579843	53582940	-	53579104	53582940	A3SS	ENSMUST00000020649.14	novel	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.38	3	5	3	5	y	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.00	0	7	0	7	n	ENSMUSG00000020380.17	Rad50	chr11	protein_coding	RAD50 double strand break repair protein
novel_NIR_3111	chr11	53583728	53585581	-	53583728	53585728	A5SS	ENSMUST00000020649.14	novel	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.22	2	7	2	7	y	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	ENSMUSG00000020380.17	Rad50	chr11	protein_coding	RAD50 double strand break repair protein
novel_NIR_3112	chr11	53686735	53695808	-	53677175	53695808	A3SS	ENSMUST00000220191.2	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000081769.10	Gm12216	chr11	protein_coding	predicted gene 12216
novel_NIR_3113	chr11	53686735	53695808	-	53694620	53695808	3pMXE	ENSMUST00000126535.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000081769.10	Gm12216	chr11	protein_coding	predicted gene 12216
novel_NIR_3114	chr11	53686735	53704402	-	53677175	53704402	A3SS	ENSMUST00000135815.8	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.25	1	3	1	3	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000081769.10	Gm12216	chr11	protein_coding	predicted gene 12216
novel_NIR_3115	chr11	53686735	53704402	-	53695934	53704402	A3SS&ES	ENSMUST00000220191.2	novel	1.00	3	0	3	0	y	0.00	0	7	0	7	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	ENSMUSG00000081769.10	Gm12216	chr11	protein_coding	predicted gene 12216
novel_NIR_3116	chr11	53686735	53704402	-	53700619	53704402	3pMXE	ENSMUST00000120776.8	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000081769.10	Gm12216	chr11	protein_coding	predicted gene 12216
novel_NIR_3117	chr11	53686735	53704402	-	53704150	53704402	3pMXE	ENSMUST00000121435.2	novel	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000081769.10	Gm12216	chr11	protein_coding	predicted gene 12216
novel_NIR_3118	chr11	53765932	53766816	-	53765932	53781973	A5SS	ENSMUST00000136307.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	n	-	-	-	-	-	-	1.00	4	0	4	0	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	n	0.00	0	2	0	2	n	ENSMUSG00000018900.8	Slc22a5	chr11	protein_coding	solute carrier family 22 (organic cation transporter), member 5
novel_NIR_3119	chr11	53765932;53766989	53766816;53781973	-	53765932	53781973	cassetteExon	ENSMUST00000136307.2	novel	1.00	1.0	0	0;2	0	n	1.00	0.5	0	0;1	0	n	1.00	6.5	0	6;7	0	y	1.00	1.5	0	0;3	0	n	1.00	3.0	0	4;2	0	y	1.00	1.5	0	1;2	0	n	0.88	7.0	1	0;14	1	n	1.00	2.0	0	1;3	0	n	1.00	1.0	0	2;0	0	n	1.00	4.0	0	0;8	0	n	1.00	2.0	0	2;2	0	y	0.20	0.5	2	0;1	2	n	ENSMUSG00000018900.8	Slc22a5	chr11	protein_coding	solute carrier family 22 (organic cation transporter), member 5
novel_NIR_3120	chr11	53765932;53766989	53766822;53781973	-	53765932	53781973	cassetteExon	ENSMUST00000136307.2	novel	1.00	1.0	0	0;2	0	n	1.00	0.5	0	0;1	0	n	1.00	4.0	0	1;7	0	n	1.00	3.0	0	3;3	0	y	1.00	1.0	0	0;2	0	n	1.00	2.5	0	3;2	0	y	0.89	8.0	1	2;14	1	y	1.00	1.5	0	0;3	0	n	-	-	-	-	-	-	1.00	5.0	0	2;8	0	y	1.00	1.0	0	0;2	0	n	0.33	1.0	2	1;1	2	n	ENSMUSG00000018900.8	Slc22a5	chr11	protein_coding	solute carrier family 22 (organic cation transporter), member 5
novel_NIR_3121	chr11	53766989	53781973	-	53765932	53781973	A3SS	ENSMUST00000136307.2	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	7	0	7	0	n	1.00	3	0	3	0	n	1.00	2	0	2	0	n	1.00	2	0	2	0	n	0.93	14	1	14	1	n	1.00	3	0	3	0	n	-	-	-	-	-	-	1.00	8	0	8	0	n	1.00	2	0	2	0	n	0.33	1	2	1	2	n	ENSMUSG00000018900.8	Slc22a5	chr11	protein_coding	solute carrier family 22 (organic cation transporter), member 5
novel_NIR_3122	chr11	53766989	53781973	-	53766989;53774590	53774487;53781973	ES	ENSMUST00000019044.8	novel	0.08	2	24.0	2	19;29	n	0.06	1	16.5	1	18;15	n	0.08	7	76.5	7	80;73	n	0.06	3	44.5	3	48;41	n	0.04	2	55.0	2	48;62	n	0.04	2	43.0	2	41;45	n	0.17	14	67.5	14	66;69	y	0.06	3	50.5	3	51;50	n	0.00	0	24.0	0	23;25	n	0.12	8	58.0	8	54;62	n	0.06	2	31.0	2	27;35	n	0.03	1	30.5	1	23;38	n	ENSMUSG00000018900.8	Slc22a5	chr11	protein_coding	solute carrier family 22 (organic cation transporter), member 5
novel_NIR_3123	chr11	53881605	53882811	-	53881664	53882811	A3SS	ENSMUST00000020586.7	novel	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.20	2	8	2	8	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.06	1	15	1	15	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	ENSMUSG00000020334.7	Slc22a4	chr11	protein_coding	solute carrier family 22 (organic cation transporter), member 4
novel_NIR_3124	chr11	53898636	53918410	-	53898697	53918410	A3SS	ENSMUST00000020586.7	novel	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.50	1	1	1	1	n	0.00	0	5	0	5	n	0.38	3	5	3	5	y	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.56	5	4	5	4	y	0.00	0	3	0	3	n	ENSMUSG00000020334.7	Slc22a4	chr11	protein_coding	solute carrier family 22 (organic cation transporter), member 4
novel_NIR_3125	chr11	53898636	53918410	-	53905282	53918410	3pMXE	ENSMUST00000154369.2	novel	-	-	-	-	-	-	0.33	1	2	1	2	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.50	3	3	3	3	y	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.56	5	4	5	4	y	-	-	-	-	-	-	ENSMUSG00000020334.7	Slc22a4	chr11	protein_coding	solute carrier family 22 (organic cation transporter), member 4
novel_NIR_3126	chr11	5436088	5452553	+	5448974	5452553	5pMXE	ENSMUST00000149826.2	novel	0.71	15	6	15	6	y	0.75	12	4	12	4	y	0.45	13	16	13	16	y	0.61	11	7	11	7	y	0.31	12	27	12	27	y	0.44	7	9	7	9	y	0.55	11	9	11	9	y	0.33	7	14	7	14	y	0.70	7	3	7	3	y	0.59	16	11	16	11	y	0.64	9	5	9	5	y	0.19	5	22	5	22	y	ENSMUSG00000085189.2	Gm11963	chr11	lncRNA	predicted gene 11963
novel_NIR_3127	chr11	54373412	54380095	+	54373412;54378621	54378538;54380095	ES	ENSMUST00000046835.14	novel	0.00	0	15.5	0	14;17	n	0.00	0	4.5	0	2;7	n	0.10	2	19.0	2	17;21	n	0.00	0	13.0	0	9;17	n	0.00	0	13.5	0	8;19	n	0.00	0	11.0	0	11;11	n	0.00	0	16.5	0	10;23	n	0.00	0	11.5	0	8;15	n	0.09	1	10.5	1	15;6	n	0.05	1	21.0	1	18;24	n	0.15	2	11.5	2	8;15	y	0.00	0	18.5	0	18;19	n	ENSMUSG00000035992.16	Fnip1	chr11	protein_coding	folliculin interacting protein 1
novel_NIR_3128	chr11	5446919	5452553	+	5448974	5452553	5pMXE	ENSMUST00000149826.2	novel	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.00	0	27	0	27	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	3	0	3	n	0.15	2	11	2	11	y	0.00	0	5	0	5	n	0.00	0	22	0	22	n	ENSMUSG00000085189.2	Gm11963	chr11	lncRNA	predicted gene 11963
novel_NIR_3129	chr11	5448974	5449054	+	5448974	5452553	A3SS	ENSMUST00000149826.2	novel	0.33	3	6	3	6	y	0.75	12	4	12	4	y	0.20	4	16	4	16	y	0.30	3	7	3	7	y	0.07	2	27	2	27	n	0.25	3	9	3	9	y	0.18	2	9	2	9	y	0.00	0	14	0	14	n	0.00	0	3	0	3	n	0.42	8	11	8	11	y	0.69	11	5	11	5	y	0.19	5	22	5	22	y	ENSMUSG00000085189.2	Gm11963	chr11	lncRNA	predicted gene 11963
novel_NIR_3130	chr11	5452697	5455232	+	5452697	5455480	A3SS	ENSMUST00000149826.2	novel	0.00	0	15	0	15	n	0.25	5	15	5	15	y	0.16	9	46	9	46	y	0.00	0	13	0	13	n	0.06	2	34	2	34	n	0.19	6	26	6	26	y	0.11	3	24	3	24	n	0.15	6	33	6	33	y	0.05	1	18	1	18	n	0.24	9	29	9	29	y	0.09	1	10	1	10	n	0.12	3	21	3	21	n	ENSMUSG00000085189.2	Gm11963	chr11	lncRNA	predicted gene 11963
novel_NIR_3131	chr11	5452697	5455881	+	5452697	5455480	3pMXE	ENSMUST00000149826.2	novel	0.06	1	15	1	15	n	0.17	3	15	3	15	y	0.10	5	46	5	46	n	0.19	3	13	3	13	y	0.00	0	34	0	34	n	0.00	0	26	0	26	n	0.00	0	24	0	24	n	0.00	0	33	0	33	n	0.00	0	18	0	18	n	0.15	5	29	5	29	y	0.00	0	10	0	10	n	0.19	5	21	5	21	y	ENSMUSG00000085189.2	Gm11963	chr11	lncRNA	predicted gene 11963
novel_NIR_3132	chr11	54809551	54811689	-	54809551	54814999	A5SS	ENSMUST00000124304.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020400.18	Tnip1	chr11	protein_coding	TNFAIP3 interacting protein 1
novel_NIR_3133	chr11	55116958	55119074	+	55116958	55119013	A3SS	ENSMUST00000108872.9	novel	0.00	0	30	0	30	n	0.00	0	20	0	20	n	0.19	5	21	5	21	y	0.00	0	51	0	51	n	0.00	0	52	0	52	n	0.00	0	23	0	23	n	0.00	0	38	0	38	n	0.09	4	41	4	41	n	0.00	0	31	0	31	n	0.00	0	44	0	44	n	0.00	0	31	0	31	n	0.00	0	36	0	36	n	ENSMUSG00000020261.16	Slc36a1	chr11	protein_coding	solute carrier family 36 (proton/amino acid symporter), member 1
novel_NIR_3134	chr11	55123532	55124332	+	55123532	55124328	A3SS	ENSMUST00000020499.14	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.60	3	2	3	2	y	0.00	0	7	0	7	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020261.16	Slc36a1	chr11	protein_coding	solute carrier family 36 (proton/amino acid symporter), member 1
novel_NIR_3135	chr11	55300823	55301644	-	55300823	55313827	A5SS	ENSMUST00000214685.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000018593.14	Sparc	chr11	protein_coding	secreted acidic cysteine rich glycoprotein
novel_NIR_3136	chr11	55337610	55340384	-	55337610	55345707	A5SS	ENSMUST00000138412.2	novel	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.33	3	6	3	6	y	0.09	1	10	1	10	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	-	-	-	-	-	-	ENSMUSG00000018585.10	Atox1	chr11	protein_coding	antioxidant 1 copper chaperone
novel_NIR_3137	chr11	55337610	55341279	-	55337610	55345707	A5SS	ENSMUST00000138412.2	novel	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.40	4	6	4	6	y	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	1.00	2	0	2	0	y	ENSMUSG00000018585.10	Atox1	chr11	protein_coding	antioxidant 1 copper chaperone
novel_NIR_3138	chr11	55337610	55341287	-	55337610	55345707	A5SS	ENSMUST00000138412.2	novel	0.67	4	2	4	2	n	0.00	0	5	0	5	n	0.73	11	4	11	4	n	0.60	9	6	9	6	y	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.59	13	9	13	9	n	0.50	3	3	3	3	y	0.00	0	1	0	1	n	0.78	14	4	14	4	n	0.18	2	9	2	9	y	1.00	8	0	8	0	y	ENSMUSG00000018585.10	Atox1	chr11	protein_coding	antioxidant 1 copper chaperone
novel_NIR_3139	chr11	55376564	55379845	+	55376564	55377944	3pMXE	ENSMUST00000151790.2	novel	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	5	0	5	0	y	1.00	1	0	1	0	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000018583.6	G3bp1	chr11	protein_coding	GTPase activating protein (SH3 domain) binding protein 1
novel_NIR_3140	chr11	5657555	5657645	-	5657555	5662498	A5SS	ENSMUST00000149980.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	9	0	9	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000020477.11	Mrps24	chr11	protein_coding	mitochondrial ribosomal protein S24
novel_NIR_3141	chr11	5676857	5678894	-	5676857	5682065	A5SS	ENSMUST00000118076.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	ENSMUSG00000049680.18	Urgcp	chr11	protein_coding	upregulator of cell proliferation
novel_NIR_3142	chr11	5676857	5678894	-	5676857	5711881	A5SS	ENSMUST00000120306.8	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	1.00	2	0	2	0	y	0.00	0	5	0	5	n	0.11	1	8	1	8	n	0.60	3	2	3	2	y	ENSMUSG00000049680.18	Urgcp	chr11	protein_coding	upregulator of cell proliferation
novel_NIR_3143	chr11	5676857;5678964	5678894;5691097	-	5676857	5691097	cassetteExon	ENSMUST00000093362.12	novel	0.00	0.0	5	0;0	5	n	0.00	0.0	9	0;0	9	n	0.00	0.0	11	0;0	11	n	0.00	0.0	9	0;0	9	n	0.00	0.0	19	0;0	19	n	0.00	0.0	14	0;0	14	n	0.04	0.5	13	0;1	13	n	0.00	0.0	14	0;0	14	n	0.20	2.0	8	2;2	8	y	0.00	0.0	21	0;0	21	n	0.04	0.5	13	1;0	13	n	0.11	1.5	12	3;0	12	n	ENSMUSG00000049680.18	Urgcp	chr11	protein_coding	upregulator of cell proliferation
novel_NIR_3144	chr11	5712240	5713507	+	5712240	5730206	A3SS	ENSMUST00000131130.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000083844.9	Ube2d-ps	chr11	transcribed_unprocessed_pseudogene	ubiquitin-conjugating enzyme E2D, pseudogene
novel_NIR_3145	chr11	5730311	5733892	+	5730311;5732278	5732185;5733892	ES	ENSMUST00000121354.8	novel	1.00	3	0.0	3	0;0	y	0.00	0	2.0	0	2;2	n	1.00	1	0.0	1	0;0	n	0.83	5	1.0	5	2;0	y	0.67	3	1.5	3	2;1	y	0.50	2	2.0	2	0;4	y	0.00	0	2.5	0	3;2	n	0.00	0	0.5	0	0;1	n	0.00	0	0.5	0	1;0	n	0.22	1	3.5	1	3;4	n	0.00	0	0.5	0	0;1	n	0.62	5	3.0	5	4;2	y	ENSMUSG00000083844.9	Ube2d-ps	chr11	transcribed_unprocessed_pseudogene	ubiquitin-conjugating enzyme E2D, pseudogene
novel_NIR_3146	chr11	5730311	5733892	+	5732357	5733892	A5SS&ES	ENSMUST00000142942.8	novel	0.75	3	1	3	1	y	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.62	5	3	5	3	y	0.75	3	1	3	1	y	1.00	2	0	2	0	y	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.12	1	7	1	7	n	0.00	0	2	0	2	n	0.71	5	2	5	2	y	ENSMUSG00000083844.9	Ube2d-ps	chr11	transcribed_unprocessed_pseudogene	ubiquitin-conjugating enzyme E2D, pseudogene
novel_NIR_3147	chr11	57405117	57409399	-	57405114	57409399	A3SS	ENSMUST00000020831.13	novel	0.65	20	11	20	11	y	0.63	19	11	19	11	y	0.54	31	26	31	26	y	0.69	25	11	25	11	y	0.75	48	16	48	16	y	0.74	29	10	29	10	y	0.79	37	10	37	10	y	0.62	15	9	15	9	y	0.80	35	9	35	9	y	0.78	45	13	45	13	y	0.77	20	6	20	6	y	0.62	33	20	33	20	y	ENSMUSG00000020523.15	Fam114a2	chr11	protein_coding	family with sequence similarity 114, member A2
novel_NIR_3148	chr11	57419115	57420388	+	57419115	57420295	A3SS	ENSMUST00000108849.8	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	17	0	17	n	0.00	0	19	0	19	n	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.00	0	19	0	19	n	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.20	2	8	2	8	y	0.08	1	11	1	11	n	ENSMUSG00000020522.14	Mfap3	chr11	protein_coding	microfibrillar-associated protein 3
novel_NIR_3149	chr11	57612219	57616349	+	57612223	57616349	A5SS	ENSMUST00000066987.14	novel	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.11	1	8	1	8	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.29	5	12	5	12	y	0.00	0	8	0	8	n	0.00	0	8	0	8	n	ENSMUSG00000020520.15	Galnt10	chr11	protein_coding	polypeptide N-acetylgalactosaminyltransferase 10
novel_NIR_3150	chr11	57686620	57692060	-	57686620;57686999	57686852;57692060	ES	ENSMUST00000140069.2	novel	0.20	1	4.0	1	8;0	n	0.00	0	10.5	0	19;2	n	0.13	1	6.5	1	10;3	n	0.15	1	5.5	1	10;1	n	0.25	4	12.0	4	24;0	y	0.00	0	3.5	0	6;1	n	0.15	3	16.5	3	31;2	y	0.00	0	6.0	0	10;2	n	0.00	0	7.0	0	12;2	n	0.00	0	12.0	0	22;2	n	0.11	1	8.0	1	15;1	n	0.08	1	11.0	1	21;1	n	ENSMUSG00000087165.8	2010001A14Rik	chr11	lncRNA	RIKEN cDNA 2010001A14 gene
novel_NIR_3151	chr11	57686620	57692060	-	57686620;57687223	57687138;57692060	ES	ENSMUST00000132378.2	novel	0.04	1	24.5	1	15;34	n	0.00	0	8.5	0	8;9	n	0.12	1	7.5	1	8;7	n	0.05	1	18.0	1	12;24	n	0.20	4	16.0	4	14;18	y	0.00	0	12.0	0	8;16	n	0.12	3	21.5	3	13;30	n	0.00	0	16.0	0	14;18	n	0.00	0	15.0	0	10;20	n	0.00	0	27.5	0	21;34	n	0.05	1	21.0	1	16;26	n	0.06	1	15.5	1	6;25	n	ENSMUSG00000087165.8	2010001A14Rik	chr11	lncRNA	RIKEN cDNA 2010001A14 gene
novel_NIR_3152	chr11	57687223	57688007	-	57687223	57692060	A5SS	ENSMUST00000152790.8	novel	0.03	1	34	1	34	n	0.10	1	9	1	9	n	0.00	0	7	0	7	n	0.04	1	24	1	24	n	0.22	5	18	5	18	y	0.16	3	16	3	16	y	0.00	0	30	0	30	n	0.00	0	18	0	18	n	0.00	0	20	0	20	n	0.00	0	34	0	34	n	0.00	0	26	0	26	n	0.00	0	25	0	25	n	ENSMUSG00000087165.8	2010001A14Rik	chr11	lncRNA	RIKEN cDNA 2010001A14 gene
novel_NIR_3153	chr11	57687223	57692018	-	57687223	57692060	A5SS	ENSMUST00000152790.8	novel	0.03	1	34	1	34	n	0.18	2	9	2	9	y	0.00	0	7	0	7	n	0.04	1	24	1	24	n	0.10	2	18	2	18	n	0.00	0	16	0	16	n	0.00	0	30	0	30	n	0.00	0	18	0	18	n	0.00	0	20	0	20	n	0.00	0	34	0	34	n	0.00	0	26	0	26	n	0.00	0	25	0	25	n	ENSMUSG00000087165.8	2010001A14Rik	chr11	lncRNA	RIKEN cDNA 2010001A14 gene
novel_NIR_3154	chr11	57861533	57864492	-	57861533	57863706	5pMXE	ENSMUST00000132323.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000086666.2	Gm12249	chr11	lncRNA	predicted gene 12249
novel_NIR_3155	chr11	57861533	57872333	-	57861533	57863706	5pMXE	ENSMUST00000132323.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000086666.2	Gm12249	chr11	lncRNA	predicted gene 12249
novel_NIR_3156	chr11	57994038	58000382	+	57995034	58000382	5pMXE	ENSMUST00000020822.12	novel	0.19	5	21	5	21	y	0.20	4	16	4	16	y	0.03	1	35	1	35	n	0.33	10	20	10	20	y	0.32	12	26	12	26	y	0.30	3	7	3	7	y	0.07	2	27	2	27	n	0.09	1	10	1	10	n	0.41	15	22	15	22	y	0.14	4	24	4	24	n	0.32	8	17	8	17	y	0.25	8	24	8	24	y	ENSMUSG00000020515.14	Cnot8	chr11	protein_coding	CCR4-NOT transcription complex, subunit 8
novel_NIR_3157	chr11	57994038	58000382	+	57995174	58000382	5pMXE	ENSMUST00000108843.8	novel	0.21	5	19	5	19	y	0.27	4	11	4	11	y	0.05	1	19	1	19	n	0.32	10	21	10	21	y	0.32	12	25	12	25	y	0.25	3	9	3	9	y	0.08	2	23	2	23	n	0.14	1	6	1	6	n	0.54	15	13	15	13	y	0.24	4	13	4	13	y	0.40	8	12	8	12	y	0.29	8	20	8	20	y	ENSMUSG00000020515.14	Cnot8	chr11	protein_coding	CCR4-NOT transcription complex, subunit 8
novel_NIR_3158	chr11	57994038	58000382	+	57995620	58000382	5pMXE	ENSMUST00000134896.2	novel	0.42	5	7	5	7	y	0.57	4	3	4	3	y	0.10	1	9	1	9	n	0.56	10	8	10	8	y	0.57	12	9	12	9	y	0.27	3	8	3	8	y	0.22	2	7	2	7	y	0.14	1	6	1	6	n	0.83	15	3	15	3	y	0.25	4	12	4	12	y	0.67	8	4	8	4	y	0.53	8	7	8	7	y	ENSMUSG00000020515.14	Cnot8	chr11	protein_coding	CCR4-NOT transcription complex, subunit 8
novel_NIR_3159	chr11	57999440	58000382	+	57995620	58000382	A5SS	ENSMUST00000134896.2	novel	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.12	1	7	1	7	n	0.00	0	6	0	6	n	0.40	2	3	2	3	y	0.14	2	12	2	12	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	ENSMUSG00000020515.14	Cnot8	chr11	protein_coding	CCR4-NOT transcription complex, subunit 8
novel_NIR_3160	chr11	58090605	58096870	+	58090605	58110290	A3SS	ENSMUST00000058704.9	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000069874.8	Irgm2	chr11	protein_coding	immunity-related GTPase family M member 2
novel_NIR_3161	chr11	58107827	58110565	+	58107827	58110290	A3SS	ENSMUST00000209079.2	novel	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	24	0	24	n	0.00	0	25	0	25	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	21	0	21	n	0.25	2	6	2	6	y	0.00	0	27	0	27	n	ENSMUSG00000069874.8	Irgm2	chr11	protein_coding	immunity-related GTPase family M member 2
novel_NIR_3162	chr11	5817000	5817095	+	5817000	5817098	A3SS	ENSMUST00000102923.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.25	1	3	1	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.33	1	2	1	2	n	ENSMUSG00000020473.14	Aebp1	chr11	protein_coding	AE binding protein 1
novel_NIR_3163	chr11	58200266	58200347	+	58200266	58200354	A3SS	ENSMUST00000153510.9	novel	0.05	1	19	1	19	n	0.00	0	23	0	23	n	0.16	3	16	3	16	y	0.12	3	21	3	21	n	0.08	3	33	3	33	n	0.06	1	17	1	17	n	0.00	0	17	0	17	n	0.00	0	14	0	14	n	0.00	0	19	0	19	n	0.20	3	12	3	12	y	0.11	3	24	3	24	n	0.08	3	34	3	34	n	ENSMUSG00000037243.18	Zfp692	chr11	protein_coding	zinc finger protein 692
novel_NIR_3164	chr11	58210416	58213395	-	58210416	58213426	A5SS	ENSMUST00000057836.12	novel	0.12	1	7	1	7	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.50	3	3	3	3	y	0.00	0	4	0	4	n	0.40	4	6	4	6	y	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.56	5	4	5	4	y	0.33	1	2	1	2	n	0.67	2	1	2	1	y	ENSMUSG00000049755.15	Zfp672	chr11	protein_coding	zinc finger protein 672
novel_NIR_3165	chr11	58210416	58213395	-	58210416	58214096	A5SS	ENSMUST00000064786.12	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	5	0	5	0	y	1.00	1	0	1	0	n	0.33	2	4	2	4	y	ENSMUSG00000049755.15	Zfp672	chr11	protein_coding	zinc finger protein 672
novel_NIR_3166	chr11	58210416	58213395	-	58210416	58221038	A5SS	ENSMUST00000186859.2	novel	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	n	0.00	0	2	0	2	n	1.00	4	0	4	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000049755.15	Zfp672	chr11	protein_coding	zinc finger protein 672
novel_NIR_3167	chr11	58210416	58213395	-	58210416;58210780	58210693;58213395	ES	ENSMUST00000108829.8	novel	0.09	1	10.0	1	10;10	n	0.00	0	12.0	0	6;18	n	0.00	0	12.5	0	14;11	n	0.00	0	7.0	0	8;6	n	0.11	3	23.5	3	17;30	n	0.00	0	10.0	0	10;10	n	0.21	4	15.0	4	14;16	y	0.00	0	9.0	0	5;13	n	0.00	0	5.0	0	2;8	n	0.23	5	17.0	5	7;27	y	0.10	1	9.0	1	3;15	n	0.11	2	17.0	2	17;17	n	ENSMUSG00000049755.15	Zfp672	chr11	protein_coding	zinc finger protein 672
novel_NIR_3168	chr11	58210416	58213395	-	58210780	58213395	3pMXE	ENSMUST00000130217.2	novel	0.09	1	10	1	10	n	0.00	0	18	0	18	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.09	3	30	3	30	n	0.00	0	10	0	10	n	0.20	4	16	4	16	y	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.16	5	27	5	27	y	0.06	1	15	1	15	n	0.11	2	17	2	17	n	ENSMUSG00000049755.15	Zfp672	chr11	protein_coding	zinc finger protein 672
novel_NIR_3169	chr11	58210416;58213555	58213395;58221038	-	58210416	58221038	cassetteExon	ENSMUST00000186859.2	novel	1.00	0.5	0	1;0	0	n	0.00	0.0	2	0;0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3.0	1	3;3	1	y	0.00	0.0	2	0;0	2	n	1.00	2.0	0	4;0	0	n	0.50	1.0	1	0;2	1	n	1.00	0.5	0	0;1	0	n	1.00	2.5	0	5;0	0	n	1.00	0.5	0	1;0	0	n	1.00	1.0	0	2;0	0	n	ENSMUSG00000049755.15	Zfp672	chr11	protein_coding	zinc finger protein 672
novel_NIR_3170	chr11	58213001	58213426	-	58210416	58213426	A3SS	ENSMUST00000057836.12	novel	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	ENSMUSG00000049755.15	Zfp672	chr11	protein_coding	zinc finger protein 672
novel_NIR_3171	chr11	58213555	58221038	-	58210416	58221038	A3SS	ENSMUST00000186859.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	2	1	2	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000049755.15	Zfp672	chr11	protein_coding	zinc finger protein 672
novel_NIR_3172	chr11	58213555	58221038	-	58213555	58213681	5pMXE	ENSMUST00000108829.8	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.33	3	6	3	6	y	-	-	-	-	-	-	0.00	0	5	0	5	n	1.00	2	0	2	0	y	0.20	1	4	1	4	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	ENSMUSG00000049755.15	Zfp672	chr11	protein_coding	zinc finger protein 672
novel_NIR_3173	chr11	58221941	58228563	+	58221941	58222080	3pMXE	ENSMUST00000149701.2	novel	0.00	0	1	0	1	n	0.00	0	6	0	6	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000013646.18	Sh3bp5l	chr11	protein_coding	SH3 binding domain protein 5 like
novel_NIR_3174	chr11	5861024	5862362	-	5861024	5899555	A5SS	ENSMUST00000102920.4	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000041798.16	Gck	chr11	protein_coding	glucokinase
novel_NIR_3175	chr11	5861024	5863332	-	5861024	5899555	A5SS	ENSMUST00000102920.4	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041798.16	Gck	chr11	protein_coding	glucokinase
novel_NIR_3176	chr11	5865396	5866338	+	5865396	5866334	A3SS	ENSMUST00000135132.2	novel	0.00	0	1	0	1	n	0.17	1	5	1	5	n	-	-	-	-	-	-	0.50	5	5	5	5	y	0.12	2	14	2	14	n	0.25	1	3	1	3	n	0.22	2	7	2	7	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.21	4	15	4	15	y	0.17	2	10	2	10	y	0.17	1	5	1	5	n	ENSMUSG00000084819.2	Gm11967	chr11	lncRNA	predicted gene 11967
novel_NIR_3177	chr11	5865396	5866398	+	5865396	5866334	A3SS	ENSMUST00000135132.2	novel	0.00	0	1	0	1	n	0.29	2	5	2	5	y	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	ENSMUSG00000084819.2	Gm11967	chr11	lncRNA	predicted gene 11967
novel_NIR_3178	chr11	5865396	5866496	+	5865396	5866334	A3SS	ENSMUST00000135132.2	novel	0.75	3	1	3	1	y	0.17	1	5	1	5	n	1.00	1	0	1	0	n	0.00	0	5	0	5	n	0.22	4	14	4	14	y	0.40	2	3	2	3	y	0.12	1	7	1	7	n	0.50	1	1	1	1	n	0.67	4	2	4	2	y	0.06	1	15	1	15	n	0.17	2	10	2	10	y	0.38	3	5	3	5	y	ENSMUSG00000084819.2	Gm11967	chr11	lncRNA	predicted gene 11967
novel_NIR_3179	chr11	5865396	5887056	+	5865396	5866334	3pMXE	ENSMUST00000135132.2	novel	0.75	3	1	3	1	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.00	0	3	0	3	n	0.22	2	7	2	7	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	15	0	15	n	0.17	2	10	2	10	y	0.00	0	5	0	5	n	ENSMUSG00000084819.2	Gm11967	chr11	lncRNA	predicted gene 11967
novel_NIR_3180	chr11	58739528	58741914	+	58738085	58741914	A5SS	ENSMUST00000143407.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000072915.4	Gm12258	chr11	protein_coding	predicted gene 12258
novel_NIR_3181	chr11	58739528	58741914	+	58739528	58745086	A3SS	ENSMUST00000139337.3	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.20	1	4	1	4	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.33	1	2	1	2	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000072915.4	Gm12258	chr11	protein_coding	predicted gene 12258
novel_NIR_3182	chr11	58742049	58745086	+	58739528	58745086	A5SS	ENSMUST00000139337.3	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.50	3	3	3	3	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000072915.4	Gm12258	chr11	protein_coding	predicted gene 12258
novel_NIR_3183	chr11	58859405	58869432	-	58859405	58868508	5pMXE	ENSMUST00000131221.2	novel	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.00	0	11	0	11	n	0.33	2	4	2	4	y	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.29	2	5	2	5	y	ENSMUSG00000085379.2	2310058D17Rik	chr11	lncRNA	RIKEN cDNA 2310058D17 gene
novel_NIR_3184	chr11	58863767	58868508	-	58859405	58868508	A3SS	ENSMUST00000131221.2	novel	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.33	2	4	2	4	y	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	ENSMUSG00000085379.2	2310058D17Rik	chr11	lncRNA	RIKEN cDNA 2310058D17 gene
novel_NIR_3185	chr11	58872162	58872797	+	58872162	58872819	A3SS	ENSMUST00000108809.8	novel	0.09	4	39	4	39	n	0.00	0	28	0	28	n	0.00	0	33	0	33	n	0.05	3	52	3	52	n	0.12	7	52	7	52	n	0.04	1	23	1	23	n	0.07	4	51	4	51	n	0.15	5	29	5	29	y	0.00	0	39	0	39	n	0.00	0	40	0	40	n	0.00	0	58	0	58	n	0.00	0	40	0	40	n	ENSMUSG00000020455.17	Trim11	chr11	protein_coding	tripartite motif-containing 11
novel_NIR_3186	chr11	58873049	58873555	+	58873049	58878459	A3SS	ENSMUST00000108810.10	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.43	3	4	3	4	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000020455.17	Trim11	chr11	protein_coding	tripartite motif-containing 11
novel_NIR_3187	chr11	58873049	58873555	+	58873049	58879551	A3SS	ENSMUST00000108809.8	novel	0.00	0	17	0	17	n	0.00	0	19	0	19	n	0.19	3	13	3	13	y	0.00	0	23	0	23	n	0.00	0	26	0	26	n	0.00	0	9	0	9	n	0.14	3	19	3	19	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	26	0	26	n	0.00	0	17	0	17	n	0.00	0	24	0	24	n	ENSMUSG00000020455.17	Trim11	chr11	protein_coding	tripartite motif-containing 11
novel_NIR_3188	chr11	58900501	58901168	-	58900489	58901168	A3SS	ENSMUST00000238536.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	15	0	15	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061462.19	Obscn	chr11	protein_coding	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF
novel_NIR_3189	chr11	58953736	58957892	-	58953736;58954509	58954291;58957892	ES	ENSMUST00000219084.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061462.19	Obscn	chr11	protein_coding	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF
novel_NIR_3190	chr11	59077713	59082030	-	59077713	59078529	5pMXE	ENSMUST00000170895.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020444.20	Guk1	chr11	protein_coding	guanylate kinase 1
novel_NIR_3191	chr11	59077713	59082030	-	59077713	59082995	A5SS	ENSMUST00000172714.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020444.20	Guk1	chr11	protein_coding	guanylate kinase 1
novel_NIR_3192	chr11	59091091	59092319	-	59091128	59092319	A3SS	ENSMUST00000154354.2	novel	0.00	0	40	0	40	n	0.04	1	23	1	23	n	0.07	3	40	3	40	n	0.03	1	39	1	39	n	0.07	5	70	5	70	n	0.00	0	32	0	32	n	0.00	0	37	0	37	n	0.17	7	35	7	35	y	0.06	2	30	2	30	n	0.15	7	40	7	40	y	0.00	0	26	0	26	n	0.18	10	46	10	46	y	ENSMUSG00000085882.2	2610507I01Rik	chr11	lncRNA	RIKEN cDNA 2610507I01 gene
novel_NIR_3193	chr11	59093498	59094998	+	59093545	59094998	A5SS	ENSMUST00000108784.4	novel	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	1.00	1	0	1	0	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.33	1	2	1	2	n	0.00	0	10	0	10	n	0.22	2	7	2	7	y	0.00	0	5	0	5	n	ENSMUSG00000036860.15	Mrpl55	chr11	protein_coding	mitochondrial ribosomal protein L55
novel_NIR_3194	chr11	59093545	59095001	+	59093545	59094998	A3SS	ENSMUST00000108784.4	novel	1.00	4	0	4	0	y	0.50	6	6	6	6	y	0.67	6	3	6	3	y	0.00	0	6	0	6	n	0.22	2	7	2	7	y	1.00	4	0	4	0	y	0.00	0	7	0	7	n	0.12	1	7	1	7	n	0.33	1	2	1	2	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.44	4	5	4	5	y	ENSMUSG00000036860.15	Mrpl55	chr11	protein_coding	mitochondrial ribosomal protein L55
novel_NIR_3195	chr11	59104349	59114605	-	59104349	59118702	A5SS	ENSMUST00000163300.8	novel	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	22	0	22	n	0.12	2	14	2	14	n	0.08	2	22	2	22	n	0.00	0	6	0	6	n	0.20	2	8	2	8	y	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.14	2	12	2	12	n	0.00	0	9	0	9	n	0.33	3	6	3	6	y	ENSMUSG00000048076.15	Arf1	chr11	protein_coding	ADP-ribosylation factor 1
novel_NIR_3196	chr11	59104349	59118120	-	59104349	59118702	A5SS	ENSMUST00000163300.8	novel	0.25	3	9	3	9	y	0.20	2	8	2	8	y	0.29	9	22	9	22	y	0.18	3	14	3	14	y	0.29	9	22	9	22	y	0.25	2	6	2	6	y	0.00	0	8	0	8	n	0.20	3	12	3	12	y	0.08	1	11	1	11	n	0.25	4	12	4	12	y	0.25	3	9	3	9	y	0.45	5	6	5	6	y	ENSMUSG00000048076.15	Arf1	chr11	protein_coding	ADP-ribosylation factor 1
novel_NIR_3197	chr11	59298636	59319167	-	59298059	59319167	A3SS	ENSMUST00000120940.8	novel	1.00	5	0	5	0	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000009894.16	Snap47	chr11	protein_coding	synaptosomal-associated protein, 47
novel_NIR_3198	chr11	59319639	59322998	-	59319639	59328804	A5SS	ENSMUST00000010038.10	novel	0.13	35	231	35	231	n	0.03	6	172	6	172	n	0.02	3	149	3	149	n	0.16	52	282	52	282	y	0.10	33	306	33	306	n	0.04	5	114	5	114	n	0.10	26	230	26	230	n	0.01	1	149	1	149	n	0.10	23	198	23	198	n	0.10	40	342	40	342	n	0.11	27	220	27	220	n	0.08	16	197	16	197	n	ENSMUSG00000009894.16	Snap47	chr11	protein_coding	synaptosomal-associated protein, 47
novel_NIR_3199	chr11	59329339	59330614	-	59329339	59333618	A5SS	ENSMUST00000145550.2	novel	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.16	3	16	3	16	y	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.06	1	16	1	16	n	0.00	0	16	0	16	n	0.25	2	6	2	6	n	0.18	3	14	3	14	n	ENSMUSG00000009894.16	Snap47	chr11	protein_coding	synaptosomal-associated protein, 47
novel_NIR_3200	chr11	59329339	59330614	-	59329339	59333618	A5SS	ENSMUST00000156146.8	novel	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.16	3	16	3	16	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.06	1	16	1	16	n	0.00	0	16	0	16	n	0.25	2	6	2	6	y	0.18	3	14	3	14	n	ENSMUSG00000009894.16	Snap47	chr11	protein_coding	synaptosomal-associated protein, 47
novel_NIR_3201	chr11	59329339	59330614	-	59329339	59340619	A5SS	ENSMUST00000136436.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.75	3	1	3	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	ENSMUSG00000009894.16	Snap47	chr11	protein_coding	synaptosomal-associated protein, 47
novel_NIR_3202	chr11	59329342	59333618	-	59329339	59333618	A3SS	ENSMUST00000156146.8	novel	0.18	2	9	2	9	y	1.00	1	0	1	0	n	0.22	2	7	2	7	y	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.06	1	16	1	16	n	0.00	0	16	0	16	n	0.14	1	6	1	6	n	0.07	1	14	1	14	n	ENSMUSG00000009894.16	Snap47	chr11	protein_coding	synaptosomal-associated protein, 47
novel_NIR_3203	chr11	59329342	59333618	-	59329342	59340619	A5SS	ENSMUST00000150297.2	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000009894.16	Snap47	chr11	protein_coding	synaptosomal-associated protein, 47
novel_NIR_3204	chr11	59329342	59333618	-	59329342	59341706	A5SS	ENSMUST00000125846.2	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000009894.16	Snap47	chr11	protein_coding	synaptosomal-associated protein, 47
novel_NIR_3205	chr11	59329342	59340741	-	59329342	59340619	A5SS	ENSMUST00000150297.2	novel	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	9	0	9	0	y	1.00	17	0	17	0	y	1.00	4	0	4	0	y	1.00	13	0	13	0	y	1.00	11	0	11	0	y	1.00	7	0	7	0	y	1.00	5	0	5	0	y	1.00	5	0	5	0	y	1.00	14	0	14	0	y	1.00	11	0	11	0	y	ENSMUSG00000009894.16	Snap47	chr11	protein_coding	synaptosomal-associated protein, 47
novel_NIR_3206	chr11	59329342	59340741	-	59329342	59341706	A5SS	ENSMUST00000125846.2	novel	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	9	0	9	0	y	1.00	17	0	17	0	y	1.00	4	0	4	0	y	1.00	13	0	13	0	y	1.00	11	0	11	0	y	1.00	7	0	7	0	y	1.00	5	0	5	0	y	1.00	5	0	5	0	y	1.00	14	0	14	0	y	1.00	11	0	11	0	y	ENSMUSG00000009894.16	Snap47	chr11	protein_coding	synaptosomal-associated protein, 47
novel_NIR_3207	chr11	59329342	59340741	-	59333667	59340741	A3SS&ES	ENSMUST00000132969.8	novel	0.36	5	9	5	9	y	0.75	3	1	3	1	y	0.69	9	4	9	4	y	0.65	17	9	17	9	y	0.50	4	4	4	4	y	0.72	13	5	13	5	y	0.73	11	4	11	4	y	0.44	7	9	7	9	y	0.28	5	13	5	13	y	0.29	5	12	5	12	y	0.78	14	4	14	4	y	0.79	11	3	11	3	y	ENSMUSG00000009894.16	Snap47	chr11	protein_coding	synaptosomal-associated protein, 47
novel_NIR_3208	chr11	59329342	59340741	-	59333738	59340741	A3SS&ES	ENSMUST00000156146.8	novel	1.00	5	0	5	0	y	1.00	3	0	3	0	y	0.90	9	1	9	1	y	1.00	17	0	17	0	y	0.57	4	3	4	3	y	1.00	13	0	13	0	y	0.85	11	2	11	2	y	0.88	7	1	7	1	y	0.71	5	2	5	2	y	0.83	5	1	5	1	y	1.00	14	0	14	0	y	0.73	11	4	11	4	y	ENSMUSG00000009894.16	Snap47	chr11	protein_coding	synaptosomal-associated protein, 47
novel_NIR_3209	chr11	59333667	59336100	-	59333667	59336107	A5SS	ENSMUST00000145550.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000009894.16	Snap47	chr11	protein_coding	synaptosomal-associated protein, 47
novel_NIR_3210	chr11	59333667	59336100	-	59333667	59340741	A5SS	ENSMUST00000132969.8	novel	0.10	1	9	1	9	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.18	2	9	2	9	y	0.20	1	4	1	4	n	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.33	2	4	2	4	y	0.00	0	3	0	3	n	ENSMUSG00000009894.16	Snap47	chr11	protein_coding	synaptosomal-associated protein, 47
novel_NIR_3211	chr11	59344471	59344635	+	59344471	59344618	A3SS	ENSMUST00000108777.10	novel	0.14	2	12	2	12	n	0.08	1	12	1	12	n	0.19	3	13	3	13	y	0.29	4	10	4	10	y	0.08	2	24	2	24	n	0.00	0	5	0	5	n	0.23	3	10	3	10	y	0.00	0	11	0	11	n	0.12	1	7	1	7	n	0.00	0	13	0	13	n	0.07	1	13	1	13	n	0.13	2	13	2	13	n	ENSMUSG00000036819.15	Jmjd4	chr11	protein_coding	jumonji domain containing 4
novel_NIR_3212	chr11	59344471	59344635	+	59344471	59344654	A3SS	ENSMUST00000045279.13	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	4	0	4	0	y	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.60	3	2	3	2	y	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.67	2	1	2	1	y	ENSMUSG00000036819.15	Jmjd4	chr11	protein_coding	jumonji domain containing 4
novel_NIR_3213	chr11	59344471	59344635	+	59344471	59344704	A3SS	ENSMUST00000147163.8	novel	0.22	2	7	2	7	y	0.17	1	5	1	5	n	0.50	3	3	3	3	y	0.40	4	6	4	6	y	0.13	2	13	2	13	n	0.00	0	5	0	5	n	0.23	3	10	3	10	y	0.00	0	6	0	6	n	0.09	1	10	1	10	n	0.00	0	8	0	8	n	0.11	1	8	1	8	n	0.20	2	8	2	8	y	ENSMUSG00000036819.15	Jmjd4	chr11	protein_coding	jumonji domain containing 4
novel_NIR_3214	chr11	59355112	59356277	-	59355112;59355898	59355838;59356277	ES	ENSMUST00000057799.8	novel	0.33	3	6.0	3	6;6	y	0.00	0	1.5	0	2;1	n	0.42	5	7.0	5	8;6	y	0.13	1	6.5	1	7;6	n	0.00	0	8.5	0	12;5	n	0.00	0	4.5	0	5;4	n	0.08	1	11.5	1	11;12	n	0.24	2	6.5	2	10;3	y	0.14	3	18.5	3	20;17	n	0.12	1	7.0	1	8;6	n	0.42	4	5.5	4	7;4	y	0.10	1	9.5	1	13;6	n	ENSMUSG00000054519.9	Zfp867	chr11	protein_coding	zinc finger protein 867
novel_NIR_3215	chr11	59356403	59356998	-	59356403	59363167	A5SS	ENSMUST00000057799.8	novel	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.27	3	8	3	8	y	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.10	1	9	1	9	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	ENSMUSG00000054519.9	Zfp867	chr11	protein_coding	zinc finger protein 867
novel_NIR_3216	chr11	59357154	59363167	-	59356403	59363167	A3SS	ENSMUST00000057799.8	novel	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.11	1	8	1	8	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.25	3	9	3	9	n	0.14	1	6	1	6	n	0.29	2	5	2	5	y	ENSMUSG00000054519.9	Zfp867	chr11	protein_coding	zinc finger protein 867
novel_NIR_3217	chr11	59378640	59382941	-	59378643	59382941	A3SS	ENSMUST00000013262.15	novel	0.32	7	15	7	15	y	0.42	8	11	8	11	y	0.39	11	17	11	17	y	0.38	8	13	8	13	y	0.45	13	16	13	16	y	0.31	5	11	5	11	y	0.32	9	19	9	19	y	0.38	9	15	9	15	y	0.36	8	14	8	14	y	0.53	20	18	20	18	y	0.53	8	7	8	7	y	0.48	14	15	14	15	y	ENSMUSG00000020472.15	Zkscan17	chr11	protein_coding	zinc finger with KRAB and SCAN domains 17
novel_NIR_3218	chr11	59394741	59394974	-	59394589	59394974	A3SS	ENSMUST00000134522.8	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000020472.15	Zkscan17	chr11	protein_coding	zinc finger with KRAB and SCAN domains 17
novel_NIR_3219	chr11	59398138	59398323	+	59398138	59398657	A3SS	ENSMUST00000138763.8	novel	0.25	3	9	3	9	y	0.00	0	8	0	8	n	0.50	2	2	2	2	y	0.00	0	7	0	7	n	0.05	1	19	1	19	n	0.67	2	1	2	1	y	0.11	2	16	2	16	n	0.00	0	4	0	4	n	0.24	4	13	4	13	y	0.27	6	16	6	16	y	0.24	4	13	4	13	y	0.00	0	17	0	17	n	ENSMUSG00000072893.13	4933439C10Rik	chr11	lncRNA	RIKEN cDNA 4933439C10 gene
novel_NIR_3220	chr11	5951392	5958790	-	5951392	5965450	A5SS	ENSMUST00000109813.9	novel	0.00	0	2	0	2	n	0.60	3	2	3	2	y	0.85	11	2	11	2	y	-	-	-	-	-	-	1.00	4	0	4	0	y	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.67	2	1	2	1	y	0.50	1	1	1	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000057897.15	Camk2b	chr11	protein_coding	calcium/calmodulin-dependent protein kinase II, beta
novel_NIR_3221	chr11	59622418	59626774	+	59622418	59626770	A3SS	ENSMUST00000108751.8	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.43	3	4	3	4	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.20	1	4	1	4	n	ENSMUSG00000005417.18	Mprip	chr11	protein_coding	myosin phosphatase Rho interacting protein
novel_NIR_3222	chr11	59649066	59655206	+	59652153	59655206	A5SS	ENSMUST00000066330.15	novel	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	15	0	15	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.20	2	8	2	8	y	ENSMUSG00000005417.18	Mprip	chr11	protein_coding	myosin phosphatase Rho interacting protein
novel_NIR_3223	chr11	59651524	59655206	+	59652153	59655206	A5SS	ENSMUST00000066330.15	novel	0.00	0	12	0	12	n	0.50	4	4	4	4	y	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.06	1	15	1	15	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	ENSMUSG00000005417.18	Mprip	chr11	protein_coding	myosin phosphatase Rho interacting protein
novel_NIR_3224	chr11	59765190	59765379	+	59751636	59765379	A5SS	ENSMUST00000149076.8	novel	0.08	3	33	3	33	n	0.19	5	22	5	22	n	0.00	0	33	0	33	n	0.00	0	22	0	22	n	0.12	4	30	4	30	n	0.20	4	16	4	16	y	0.05	2	39	2	39	n	0.04	1	26	1	26	n	0.04	1	23	1	23	n	0.02	1	50	1	50	n	0.00	0	37	0	37	n	0.03	1	37	1	37	n	ENSMUSG00000032615.15	Nt5m	chr11	protein_coding	5',3'-nucleotidase, mitochondrial
novel_NIR_3225	chr11	59865005	59874269	-	59862084	59874269	A3SS	ENSMUST00000147422.8	novel	0.50	1	1	1	1	n	0.56	5	4	5	4	y	0.00	0	3	0	3	n	1.00	8	0	8	0	y	0.50	2	2	2	2	y	0.67	4	2	4	2	y	0.33	1	2	1	2	n	0.67	4	2	4	2	y	0.25	1	3	1	3	n	1.00	9	0	9	0	y	1.00	5	0	5	0	y	0.44	4	5	4	5	y	ENSMUSG00000000301.17	Pemt	chr11	protein_coding	phosphatidylethanolamine N-methyltransferase
novel_NIR_3226	chr11	59865005	59874269	-	59865005	59921021	A5SS	ENSMUST00000136660.2	novel	1.00	1	0	1	0	n	1.00	5	0	5	0	n	-	-	-	-	-	-	1.00	8	0	8	0	n	1.00	2	0	2	0	y	1.00	4	0	4	0	n	1.00	1	0	1	0	n	1.00	4	0	4	0	n	1.00	1	0	1	0	n	1.00	9	0	9	0	n	1.00	5	0	5	0	n	1.00	4	0	4	0	n	ENSMUSG00000000301.17	Pemt	chr11	protein_coding	phosphatidylethanolamine N-methyltransferase
novel_NIR_3227	chr11	59865005	59922539	-	59865005;59921339	59921021;59922539	ES	ENSMUST00000136660.2	novel	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	1.00	3	0.0	3	0;0	y	-	-	-	-	-	-	1.00	3	0.0	3	0;0	y	-	-	-	-	-	-	0.86	3	0.5	3	0;1	y	-	-	-	-	-	-	0.44	2	2.5	2	0;5	y	-	-	-	-	-	-	ENSMUSG00000000301.17	Pemt	chr11	protein_coding	phosphatidylethanolamine N-methyltransferase
novel_NIR_3228	chr11	59865005;59874380	59874269;59922539	-	59865005;59921339	59921021;59922539	MXE	ENSMUST00000136660.2	novel	1.00	15.0	0.0	1;29	0;0	n	1.00	2.5	0.0	5;0	0;0	n	1.00	3.5	0.0	0;7	0;0	n	1.00	6.5	0.0	8;5	0;0	y	1.00	1.0	0.0	2;0	0;0	n	1.00	14.0	0.0	4;24	0;0	y	1.00	8.5	0.0	1;16	0;0	n	1.00	10.5	0.0	4;17	0;0	y	0.50	0.5	0.5	1;0	0;1	n	1.00	21.0	0.0	9;33	0;0	y	0.79	9.5	2.5	5;14	0;5	y	1.00	14.0	0.0	4;24	0;0	y	ENSMUSG00000000301.17	Pemt	chr11	protein_coding	phosphatidylethanolamine N-methyltransferase
novel_NIR_3229	chr11	59867810	59922539	-	59921339	59922539	A3SS&ES	ENSMUST00000136660.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	ENSMUSG00000000301.17	Pemt	chr11	protein_coding	phosphatidylethanolamine N-methyltransferase
novel_NIR_3230	chr11	59873025	59874269	-	59862084	59874269	A3SS	ENSMUST00000147422.8	novel	0.00	0	1	0	1	n	0.43	3	4	3	4	y	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	5	0	5	0	y	0.00	0	5	0	5	n	ENSMUSG00000000301.17	Pemt	chr11	protein_coding	phosphatidylethanolamine N-methyltransferase
novel_NIR_3231	chr11	59874380	59922539	-	59921339	59922539	A3SS&ES	ENSMUST00000136660.2	novel	1.00	29	0	29	0	n	-	-	-	-	-	-	1.00	7	0	7	0	y	1.00	5	0	5	0	n	-	-	-	-	-	-	1.00	24	0	24	0	n	1.00	16	0	16	0	n	1.00	17	0	17	0	n	0.00	0	1	0	1	n	1.00	33	0	33	0	n	0.74	14	5	14	5	n	1.00	24	0	24	0	n	ENSMUSG00000000301.17	Pemt	chr11	protein_coding	phosphatidylethanolamine N-methyltransferase
novel_NIR_3232	chr11	59874380	59937166	-	59874384	59937166	A3SS	ENSMUST00000148512.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.75	3	1	3	1	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	ENSMUSG00000000301.17	Pemt	chr11	protein_coding	phosphatidylethanolamine N-methyltransferase
novel_NIR_3233	chr11	59874380	59937166	-	59922646	59937166	A3SS&ES	ENSMUST00000102693.9	novel	0.00	0	8	0	8	n	0.00	0	15	0	15	n	0.18	3	14	3	14	y	0.00	0	17	0	17	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	23	0	23	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.00	0	24	0	24	n	0.00	0	16	0	16	n	ENSMUSG00000000301.17	Pemt	chr11	protein_coding	phosphatidylethanolamine N-methyltransferase
novel_NIR_3234	chr11	59874380	59937166	-	59935552	59937166	3pMXE	ENSMUST00000133028.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000000301.17	Pemt	chr11	protein_coding	phosphatidylethanolamine N-methyltransferase
novel_NIR_3235	chr11	59874384	59897978	-	59874384	59911937	A5SS	ENSMUST00000143646.2	novel	0.00	0	7	0	7	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.25	1	3	1	3	n	ENSMUSG00000000301.17	Pemt	chr11	protein_coding	phosphatidylethanolamine N-methyltransferase
novel_NIR_3236	chr11	59874384	59897978	-	59874384	59937166	A5SS	ENSMUST00000148512.2	novel	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	2	4	2	4	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.17	1	5	1	5	n	ENSMUSG00000000301.17	Pemt	chr11	protein_coding	phosphatidylethanolamine N-methyltransferase
novel_NIR_3237	chr11	59874384	59914479	-	59874384	59911937	5pMXE	ENSMUST00000143646.2	novel	0.42	5	7	5	7	y	1.00	4	0	4	0	y	0.40	2	3	2	3	y	0.50	2	2	2	2	y	0.56	5	4	5	4	y	0.50	2	2	2	2	y	0.50	4	4	4	4	y	-	-	-	-	-	-	0.29	2	5	2	5	y	0.44	7	9	7	9	y	0.29	2	5	2	5	y	0.67	6	3	6	3	y	ENSMUSG00000000301.17	Pemt	chr11	protein_coding	phosphatidylethanolamine N-methyltransferase
novel_NIR_3238	chr11	59874384	59914479	-	59874384	59937166	A5SS	ENSMUST00000148512.2	novel	0.83	5	1	5	1	y	0.80	4	1	4	1	y	0.67	2	1	2	1	y	1.00	2	0	2	0	y	0.56	5	4	5	4	y	0.67	2	1	2	1	y	0.67	4	2	4	2	y	-	-	-	-	-	-	0.33	2	4	2	4	y	0.88	7	1	7	1	y	0.25	2	6	2	6	y	0.55	6	5	6	5	y	ENSMUSG00000000301.17	Pemt	chr11	protein_coding	phosphatidylethanolamine N-methyltransferase
novel_NIR_3239	chr11	59874384	59917115	-	59874384	59911937	5pMXE	ENSMUST00000143646.2	novel	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.29	2	5	2	5	y	0.10	1	9	1	9	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	ENSMUSG00000000301.17	Pemt	chr11	protein_coding	phosphatidylethanolamine N-methyltransferase
novel_NIR_3240	chr11	59874384	59917115	-	59874384	59937166	A5SS	ENSMUST00000148512.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.33	2	4	2	4	y	0.50	1	1	1	1	n	0.14	1	6	1	6	n	0.00	0	5	0	5	n	ENSMUSG00000000301.17	Pemt	chr11	protein_coding	phosphatidylethanolamine N-methyltransferase
novel_NIR_3241	chr11	59874384	59921702	-	59874384	59911937	5pMXE	ENSMUST00000143646.2	novel	0.00	0	7	0	7	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	ENSMUSG00000000301.17	Pemt	chr11	protein_coding	phosphatidylethanolamine N-methyltransferase
novel_NIR_3242	chr11	59874384	59921702	-	59874384	59937166	A5SS	ENSMUST00000148512.2	novel	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.14	1	6	1	6	n	0.00	0	5	0	5	n	ENSMUSG00000000301.17	Pemt	chr11	protein_coding	phosphatidylethanolamine N-methyltransferase
novel_NIR_3243	chr11	59874384	59927648	-	59874384	59911937	5pMXE	ENSMUST00000143646.2	novel	0.22	2	7	2	7	y	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.43	3	4	3	4	y	1.00	1	0	1	0	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.44	4	5	4	5	y	0.25	1	3	1	3	n	ENSMUSG00000000301.17	Pemt	chr11	protein_coding	phosphatidylethanolamine N-methyltransferase
novel_NIR_3244	chr11	59874384	59927648	-	59874384	59937166	A5SS	ENSMUST00000148512.2	novel	0.67	2	1	2	1	y	0.50	1	1	1	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.60	3	2	3	2	y	1.00	1	0	1	0	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.40	4	6	4	6	y	0.17	1	5	1	5	n	ENSMUSG00000000301.17	Pemt	chr11	protein_coding	phosphatidylethanolamine N-methyltransferase
novel_NIR_3245	chr11	59898095	59922539	-	59921339	59922539	A3SS&ES	ENSMUST00000136660.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	ENSMUSG00000000301.17	Pemt	chr11	protein_coding	phosphatidylethanolamine N-methyltransferase
novel_NIR_3246	chr11	59911997	59922539	-	59921339	59922539	A3SS&ES	ENSMUST00000136660.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	3	0	3	0	y	0.29	2	5	2	5	y	1.00	2	0	2	0	y	ENSMUSG00000000301.17	Pemt	chr11	protein_coding	phosphatidylethanolamine N-methyltransferase
novel_NIR_3247	chr11	59914529	59922539	-	59921339	59922539	A3SS&ES	ENSMUST00000136660.2	novel	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	1.00	2	0	2	0	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	5	0	5	n	-	-	-	-	-	-	ENSMUSG00000000301.17	Pemt	chr11	protein_coding	phosphatidylethanolamine N-methyltransferase
novel_NIR_3248	chr11	59917236	59922539	-	59921339	59922539	A3SS&ES	ENSMUST00000136660.2	novel	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	ENSMUSG00000000301.17	Pemt	chr11	protein_coding	phosphatidylethanolamine N-methyltransferase
novel_NIR_3249	chr11	59918694	59922539	-	59921339	59922539	A3SS&ES	ENSMUST00000136660.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	5	0	5	n	1.00	2	0	2	0	y	ENSMUSG00000000301.17	Pemt	chr11	protein_coding	phosphatidylethanolamine N-methyltransferase
novel_NIR_3250	chr11	59921967	59922539	-	59921339	59922539	A3SS	ENSMUST00000136660.2	novel	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	12	0	12	0	y	1.00	4	0	4	0	y	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	6	0	6	0	y	1.00	7	0	7	0	y	0.75	3	1	3	1	y	-	-	-	-	-	-	0.38	3	5	3	5	y	1.00	3	0	3	0	y	ENSMUSG00000000301.17	Pemt	chr11	protein_coding	phosphatidylethanolamine N-methyltransferase
novel_NIR_3251	chr11	59922646	59924436	-	59922646	59930931	A5SS	ENSMUST00000147422.8	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000000301.17	Pemt	chr11	protein_coding	phosphatidylethanolamine N-methyltransferase
novel_NIR_3252	chr11	59922646	59924436	-	59922646	59937166	A5SS	ENSMUST00000102693.9	novel	0.33	4	8	4	8	y	0.00	0	15	0	15	n	0.07	1	14	1	14	n	0.00	0	17	0	17	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	23	0	23	n	0.00	0	9	0	9	n	0.10	1	9	1	9	n	0.00	0	17	0	17	n	0.04	1	24	1	24	n	0.00	0	16	0	16	n	ENSMUSG00000000301.17	Pemt	chr11	protein_coding	phosphatidylethanolamine N-methyltransferase
novel_NIR_3253	chr11	59922646	59924436	-	59922646	59937170	A5SS	ENSMUST00000000310.14	novel	0.80	4	1	4	1	y	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.25	1	3	1	3	n	-	-	-	-	-	-	ENSMUSG00000000301.17	Pemt	chr11	protein_coding	phosphatidylethanolamine N-methyltransferase
novel_NIR_3254	chr11	59922646	59925535	-	59922646	59930931	A5SS	ENSMUST00000147422.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000000301.17	Pemt	chr11	protein_coding	phosphatidylethanolamine N-methyltransferase
novel_NIR_3255	chr11	59922646	59925535	-	59922646	59937170	A5SS	ENSMUST00000000310.14	novel	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.25	2	6	2	6	y	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000000301.17	Pemt	chr11	protein_coding	phosphatidylethanolamine N-methyltransferase
novel_NIR_3256	chr11	59996220	60075922	+	60031196	60075922	5pMXE	ENSMUST00000171108.8	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.33	2	4	2	4	y	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000062115.16	Rai1	chr11	protein_coding	retinoic acid induced 1
novel_NIR_3257	chr11	59996220	60075922	+	60066787	60075922	5pMXE	ENSMUST00000102688.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000062115.16	Rai1	chr11	protein_coding	retinoic acid induced 1
novel_NIR_3258	chr11	59996220	60084765	+	59996220;60031196	60031067;60084765	ES	ENSMUST00000149770.8	novel	0.00	0	9.5	0	16;3	n	0.00	0	13.0	0	21;5	n	0.00	0	12.5	0	21;4	n	0.00	0	15.0	0	22;8	n	0.18	3	14.0	3	16;12	y	0.22	2	7.0	2	14;0	y	0.12	1	7.0	1	13;1	n	0.25	1	3.0	1	4;2	n	0.00	0	6.5	0	11;2	n	0.00	0	14.0	0	15;13	n	0.12	1	7.5	1	13;2	n	0.00	0	7.5	0	13;2	n	ENSMUSG00000062115.16	Rai1	chr11	protein_coding	retinoic acid induced 1
novel_NIR_3259	chr11	60031196	60031481	+	60031196	60031478	A3SS	ENSMUST00000156902.2	novel	0.20	1	4	1	4	n	0.12	1	7	1	7	n	0.00	0	7	0	7	n	0.10	1	9	1	9	n	0.00	0	11	0	11	n	0.09	1	10	1	10	n	0.00	0	8	0	8	n	1.00	1	0	1	0	n	0.00	0	8	0	8	n	0.21	3	11	3	11	y	0.00	0	16	0	16	n	0.08	1	12	1	12	n	ENSMUSG00000062115.16	Rai1	chr11	protein_coding	retinoic acid induced 1
novel_NIR_3260	chr11	60031196	60031481	+	60031196	60075922	A3SS	ENSMUST00000064190.13	novel	0.20	1	4	1	4	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.00	0	5	0	5	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.50	3	3	3	3	y	0.00	0	2	0	2	n	0.50	1	1	1	1	n	ENSMUSG00000062115.16	Rai1	chr11	protein_coding	retinoic acid induced 1
novel_NIR_3261	chr11	60031196	60031481	+	60031196	60084765	A3SS	ENSMUST00000149770.8	novel	0.25	1	3	1	3	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.11	1	8	1	8	n	0.00	0	12	0	12	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.19	3	13	3	13	y	0.00	0	2	0	2	n	0.33	1	2	1	2	n	ENSMUSG00000062115.16	Rai1	chr11	protein_coding	retinoic acid induced 1
novel_NIR_3262	chr11	60031708	60084765	+	60031196	60084765	A5SS	ENSMUST00000149770.8	novel	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	-	-	-	-	-	-	0.75	3	1	3	1	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	13	0	13	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000062115.16	Rai1	chr11	protein_coding	retinoic acid induced 1
novel_NIR_3263	chr11	60031708	60084765	+	60081448	60084765	A5SS&ES	ENSMUST00000064190.13	novel	0.12	1	7	1	7	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.60	3	2	3	2	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	18	0	18	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	ENSMUSG00000062115.16	Rai1	chr11	protein_coding	retinoic acid induced 1
novel_NIR_3264	chr11	60098083	60098217	-	60098083	60113349	A5SS	ENSMUST00000136215.2	novel	0.38	3	5	3	5	y	1.00	1	0	1	0	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.10	1	9	1	9	n	0.00	0	8	0	8	n	0.33	4	8	4	8	y	0.43	6	8	6	8	y	0.29	5	12	5	12	y	ENSMUSG00000020538.16	Srebf1	chr11	protein_coding	sterol regulatory element binding transcription factor 1
novel_NIR_3265	chr11	60098416	60101162	-	60097856	60101162	A3SS	ENSMUST00000147967.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000020538.16	Srebf1	chr11	protein_coding	sterol regulatory element binding transcription factor 1
novel_NIR_3266	chr11	60111451	60113349	-	60098083	60113349	A3SS	ENSMUST00000136215.2	novel	0.17	1	5	1	5	n	1.00	2	0	2	0	y	0.00	0	6	0	6	n	0.38	6	10	6	10	y	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.33	4	8	4	8	y	0.11	1	8	1	8	n	0.00	0	8	0	8	n	0.14	2	12	2	12	n	ENSMUSG00000020538.16	Srebf1	chr11	protein_coding	sterol regulatory element binding transcription factor 1
novel_NIR_3267	chr11	60132180	60132644	-	60121963	60132644	A3SS	ENSMUST00000095254.12	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000000538.19	Tom1l2	chr11	protein_coding	target of myb1-like 2 (chicken)
novel_NIR_3268	chr11	60132180	60132644	-	60129898	60132644	A3SS	ENSMUST00000133420.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000000538.19	Tom1l2	chr11	protein_coding	target of myb1-like 2 (chicken)
novel_NIR_3269	chr11	60132180	60132644	-	60132171	60132644	A3SS	ENSMUST00000064019.15	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	ENSMUSG00000000538.19	Tom1l2	chr11	protein_coding	target of myb1-like 2 (chicken)
novel_NIR_3270	chr11	60249642	60249735	+	60249642	60254290	A3SS	ENSMUST00000070805.13	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000056598.17	Drc3	chr11	protein_coding	dynein regulatory complex subunit 3
novel_NIR_3271	chr11	60302555	60307577	-	60302555	60307812	A5SS	ENSMUST00000138696.8	novel	0.75	3	1	3	1	y	0.00	0	2	0	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.50	3	3	3	3	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000042709.16	Atpaf2	chr11	protein_coding	ATP synthase mitochondrial F1 complex assembly factor 2
novel_NIR_3272	chr11	60307710	60307812	-	60300456	60307812	A3SS	ENSMUST00000154387.8	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000042709.16	Atpaf2	chr11	protein_coding	ATP synthase mitochondrial F1 complex assembly factor 2
novel_NIR_3273	chr11	60307710	60307812	-	60302555	60307812	A3SS	ENSMUST00000138696.8	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000042709.16	Atpaf2	chr11	protein_coding	ATP synthase mitochondrial F1 complex assembly factor 2
novel_NIR_3274	chr11	60611320	60611464	-	60611323	60611464	A3SS	ENSMUST00000002889.5	novel	0.23	7	23	7	23	y	0.12	3	23	3	23	n	0.23	8	27	8	27	y	0.17	8	38	8	38	y	0.18	10	45	10	45	y	0.17	5	24	5	24	y	0.20	8	33	8	33	y	0.12	4	28	4	28	n	0.28	9	23	9	23	y	0.19	10	44	10	44	y	0.24	4	13	4	13	y	0.20	8	32	8	32	y	ENSMUSG00000002812.5	Flii	chr11	protein_coding	flightless I actin binding protein
novel_NIR_3275	chr11	60619027	60621109	+	60619393	60621109	5pMXE	ENSMUST00000018743.5	novel	0.00	0	36	0	36	n	0.00	0	30	0	30	n	0.04	1	22	1	22	n	0.00	0	61	0	61	n	0.00	0	41	0	41	n	0.00	0	17	0	17	n	0.15	5	29	5	29	y	0.00	0	25	0	25	n	0.12	5	36	5	36	n	0.02	1	46	1	46	n	0.00	0	46	0	46	n	0.00	0	36	0	36	n	ENSMUSG00000018599.6	Mief2	chr11	protein_coding	mitochondrial elongation factor 2
novel_NIR_3276	chr11	60621261	60621742	+	60621261	60621409	3pMXE	ENSMUST00000146159.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	ENSMUSG00000018599.6	Mief2	chr11	protein_coding	mitochondrial elongation factor 2
novel_NIR_3277	chr11	60647574	60650165	-	60647574	60650123	A5SS	ENSMUST00000002891.11	novel	0.00	0	8	0	8	n	0.14	1	6	1	6	n	0.22	2	7	2	7	y	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.08	1	12	1	12	n	ENSMUSG00000002814.16	Top3a	chr11	protein_coding	topoisomerase (DNA) III alpha
novel_NIR_3278	chr11	60680562	60680972	-	60680142	60680972	A3SS	ENSMUST00000174214.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000020534.15	Shmt1	chr11	protein_coding	serine hydroxymethyltransferase 1 (soluble)
novel_NIR_3279	chr11	60683897	60684952	-	60683897	60688351	A5SS	ENSMUST00000174719.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	ENSMUSG00000020534.15	Shmt1	chr11	protein_coding	serine hydroxymethyltransferase 1 (soluble)
novel_NIR_3280	chr11	60692857	60694742	-	60692857	60693383	5pMXE	ENSMUST00000173698.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020534.15	Shmt1	chr11	protein_coding	serine hydroxymethyltransferase 1 (soluble)
novel_NIR_3281	chr11	60721586	60734991	+	60721557	60734991	A5SS	ENSMUST00000042281.14	novel	0.20	10	39	10	39	y	0.00	0	29	0	29	n	0.00	0	32	0	32	n	0.20	9	37	9	37	y	0.27	13	36	13	36	y	0.11	2	17	2	17	n	0.26	16	46	16	46	y	0.23	8	27	8	27	y	0.00	0	36	0	36	n	0.25	15	45	15	45	y	0.00	0	37	0	37	n	0.20	6	24	6	24	y	ENSMUSG00000042569.14	Dhrs7b	chr11	protein_coding	dehydrogenase/reductase (SDR family) member 7B
novel_NIR_3282	chr11	60728755	60734991	+	60721557	60734991	A5SS	ENSMUST00000042281.14	novel	0.00	0	39	0	39	n	0.15	5	29	5	29	y	0.06	2	32	2	32	n	0.12	5	37	5	37	n	0.10	4	36	4	36	n	0.06	1	17	1	17	n	0.18	10	46	10	46	y	0.13	4	27	4	27	n	0.10	4	36	4	36	n	0.21	12	45	12	45	y	0.07	3	37	3	37	n	0.00	0	24	0	24	n	ENSMUSG00000042569.14	Dhrs7b	chr11	protein_coding	dehydrogenase/reductase (SDR family) member 7B
novel_NIR_3283	chr11	60742784	60746526	+	60742784;60743337	60743245;60746526	ES	ENSMUST00000042281.14	novel	0.10	8	69.5	8	70;69	n	0.13	11	71.5	11	69;74	n	0.12	10	71.0	10	89;53	n	0.10	9	82.5	9	81;84	n	0.05	6	115.5	6	111;120	n	0.05	3	57.0	3	57;57	n	0.06	8	131.5	8	151;112	n	0.02	1	51.0	1	52;50	n	0.11	8	64.0	8	62;66	n	0.16	20	105.0	20	104;106	y	0.09	8	78.0	8	84;72	n	0.11	12	96.5	12	105;88	n	ENSMUSG00000042569.14	Dhrs7b	chr11	protein_coding	dehydrogenase/reductase (SDR family) member 7B
novel_NIR_3284	chr11	60756174	60765541	-	60756174	60766586	A5SS	ENSMUST00000168218.8	novel	0.38	5	8	5	8	n	0.12	2	14	2	14	n	0.17	5	25	5	25	n	0.00	0	8	0	8	n	0.12	3	21	3	21	n	0.12	1	7	1	7	n	0.11	2	17	2	17	n	0.12	2	14	2	14	n	0.19	4	17	4	17	n	0.19	5	21	5	21	n	0.35	7	13	7	13	y	0.13	2	13	2	13	n	ENSMUSG00000043284.13	Tmem11	chr11	protein_coding	transmembrane protein 11
novel_NIR_3285	chr11	60756174;60765632	60765541;60766586	-	60756174	60766586	cassetteExon	ENSMUST00000168218.8	novel	0.27	3.0	8	5;1	8	n	0.07	1.0	14	2;0	14	n	0.24	8.0	25	5;11	25	y	0.20	2.0	8	0;4	8	n	0.07	1.5	21	3;0	21	n	0.07	0.5	7	1;0	7	n	0.08	1.5	17	2;1	17	n	0.07	1.0	14	2;0	14	n	0.15	3.0	17	4;2	17	y	0.22	6.0	21	5;7	21	y	0.21	3.5	13	7;0	13	n	0.24	4.0	13	2;6	13	y	ENSMUSG00000043284.13	Tmem11	chr11	protein_coding	transmembrane protein 11
novel_NIR_3286	chr11	60765632	60766586	-	60756174	60766586	A3SS	ENSMUST00000168218.8	novel	0.11	1	8	1	8	n	0.00	0	14	0	14	n	0.31	11	25	11	25	n	0.33	4	8	4	8	y	0.00	0	21	0	21	n	0.00	0	7	0	7	n	0.06	1	17	1	17	n	0.00	0	14	0	14	n	0.11	2	17	2	17	n	0.25	7	21	7	21	n	0.00	0	13	0	13	n	0.32	6	13	6	13	n	ENSMUSG00000043284.13	Tmem11	chr11	protein_coding	transmembrane protein 11
novel_NIR_3287	chr11	6100627	6109825	-	6100627	6143154	A5SS	ENSMUST00000066496.10	novel	0.24	6	19	6	19	y	0.13	4	26	4	26	n	0.00	0	31	0	31	n	0.05	2	40	2	40	n	0.21	11	42	11	42	y	0.10	2	19	2	19	n	0.12	4	28	4	28	n	0.21	6	23	6	23	y	0.00	0	25	0	25	n	0.11	4	33	4	33	n	0.00	0	26	0	26	n	0.08	3	36	3	36	n	ENSMUSG00000053838.15	Nudcd3	chr11	protein_coding	NudC domain containing 3
novel_NIR_3288	chr11	61144598	61147565	-	61144578	61147565	A3SS	ENSMUST00000141368.8	novel	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	24	0	24	n	-	-	-	-	-	-	1.00	5	0	5	0	y	ENSMUSG00000010025.20	Aldh3a2	chr11	protein_coding	aldehyde dehydrogenase family 3, subfamily A2
novel_NIR_3289	chr11	61156121	61157369	-	61156121	61158065	A5SS	ENSMUST00000147291.8	novel	0.67	2	1	2	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.40	2	3	2	3	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.20	1	4	1	4	n	ENSMUSG00000010025.20	Aldh3a2	chr11	protein_coding	aldehyde dehydrogenase family 3, subfamily A2
novel_NIR_3290	chr11	61243961	61245157	-	61243961	61250178	A5SS	ENSMUST00000010267.10	novel	0.00	0	119	0	119	n	0.00	0	97	0	97	n	0.00	0	8	0	8	n	0.01	1	186	1	186	n	0.02	3	124	3	124	n	0.00	0	9	0	9	n	0.01	2	144	2	144	n	0.18	3	14	3	14	y	0.00	0	117	0	117	n	0.02	4	233	4	233	n	0.01	1	133	1	133	n	0.01	1	147	1	147	n	ENSMUSG00000010122.15	Slc47a1	chr11	protein_coding	solute carrier family 47, member 1
novel_NIR_3291	chr11	61250454	61253653	-	61250454;61253580	61253513;61253653	ES	ENSMUST00000010267.10	novel	0.02	2	81.0	2	71;91	n	0.09	5	53.0	5	59;47	n	0.00	0	4.5	0	6;3	n	0.06	9	136.0	9	130;142	n	0.06	6	89.5	6	92;87	n	0.29	3	7.5	3	8;7	y	0.05	5	87.5	5	97;78	n	0.09	2	21.0	2	20;22	n	0.09	7	73.5	7	61;86	n	0.08	13	144.0	13	145;143	n	0.08	8	87.5	8	83;92	n	0.02	3	119.0	3	118;120	n	ENSMUSG00000010122.15	Slc47a1	chr11	protein_coding	solute carrier family 47, member 1
novel_NIR_3292	chr11	61250454	61253653	-	61253580	61253653	3pMXE	ENSMUST00000147583.2	novel	0.02	2	91	2	91	n	0.10	5	47	5	47	n	0.00	0	3	0	3	n	0.06	9	142	9	142	n	0.06	6	87	6	87	n	0.30	3	7	3	7	y	0.06	5	78	5	78	n	0.08	2	22	2	22	n	0.08	7	86	7	86	n	0.08	13	143	13	143	n	0.08	8	92	8	92	n	0.02	3	120	3	120	n	ENSMUSG00000010122.15	Slc47a1	chr11	protein_coding	solute carrier family 47, member 1
novel_NIR_3293	chr11	61254317	61254781	-	61254317	61256268	A5SS	ENSMUST00000147583.2	novel	0.00	0	14	0	14	n	0.09	1	10	1	10	n	-	-	-	-	-	-	0.12	2	14	2	14	n	0.22	4	14	4	14	n	-	-	-	-	-	-	0.09	1	10	1	10	n	0.17	1	5	1	5	n	0.14	2	12	2	12	n	0.20	3	12	3	12	y	0.06	1	16	1	16	n	0.00	0	12	0	12	n	ENSMUSG00000010122.15	Slc47a1	chr11	protein_coding	solute carrier family 47, member 1
novel_NIR_3294	chr11	61254317	61254781	-	61254317	61257355	A5SS	ENSMUST00000131723.8	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.40	2	3	2	3	y	1.00	4	0	4	0	y	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	1	0	1	0	n	0.50	2	2	2	2	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000010122.15	Slc47a1	chr11	protein_coding	solute carrier family 47, member 1
novel_NIR_3295	chr11	61254317	61255943	-	61254317	61256268	A5SS	ENSMUST00000147583.2	novel	0.00	0	14	0	14	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.00	0	14	0	14	n	0.00	0	14	0	14	n	-	-	-	-	-	-	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.20	3	12	3	12	y	0.00	0	16	0	16	n	0.00	0	12	0	12	n	ENSMUSG00000010122.15	Slc47a1	chr11	protein_coding	solute carrier family 47, member 1
novel_NIR_3296	chr11	61254317	61257645	-	61254317	61257355	A5SS	ENSMUST00000131723.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000010122.15	Slc47a1	chr11	protein_coding	solute carrier family 47, member 1
novel_NIR_3297	chr11	61254317	61258269	-	61254317	61256268	5pMXE	ENSMUST00000147583.2	novel	0.00	0	14	0	14	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.00	0	14	0	14	n	0.00	0	14	0	14	n	-	-	-	-	-	-	0.17	2	10	2	10	y	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.00	0	12	0	12	n	ENSMUSG00000010122.15	Slc47a1	chr11	protein_coding	solute carrier family 47, member 1
novel_NIR_3298	chr11	61254317	61258269	-	61254317	61257355	A5SS&ES	ENSMUST00000131723.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000010122.15	Slc47a1	chr11	protein_coding	solute carrier family 47, member 1
novel_NIR_3299	chr11	61254317;61254888	61254781;61256268	-	61254317	61256268	cassetteExon	ENSMUST00000147583.2	novel	0.00	0.0	14	0;0	14	n	0.05	0.5	10	1;0	10	n	-	-	-	-	-	-	0.07	1.0	14	2;0	14	n	0.18	3.0	14	4;2	14	y	-	-	-	-	-	-	0.09	1.0	10	1;1	10	n	0.17	1.0	5	1;1	5	n	0.14	2.0	12	2;2	12	n	0.11	1.5	12	3;0	12	n	0.03	0.5	16	1;0	16	n	0.08	1.0	12	0;2	12	n	ENSMUSG00000010122.15	Slc47a1	chr11	protein_coding	solute carrier family 47, member 1
novel_NIR_3300	chr11	61254317;61256371	61255943;61258499	-	61254317;61257720	61257355;61258499	MXE	ENSMUST00000131723.8	novel	0.12	2.0	15.0	0;4	1;29	n	0.00	0.0	5.5	0;0	0;11	n	-	-	-	-	-	-	0.22	4.0	14.0	0;8	3;25	n	0.09	1.0	10.0	0;2	0;20	n	-	-	-	-	-	-	0.04	0.5	11.0	0;1	2;20	n	0.50	1.0	1.0	0;2	0;2	n	0.00	0.0	8.0	0;0	2;14	n	0.41	6.5	9.5	3;10	0;19	y	0.10	1.0	9.5	0;2	0;19	n	0.44	6.0	7.5	0;12	0;15	n	ENSMUSG00000010122.15	Slc47a1	chr11	protein_coding	solute carrier family 47, member 1
novel_NIR_3301	chr11	61254317;61256425	61255943;61258499	-	61254317;61257720	61257355;61258499	MXE	ENSMUST00000131723.8	novel	0.00	0.0	15.0	0;0	1;29	n	0.00	0.0	5.5	0;0	0;11	n	-	-	-	-	-	-	0.00	0.0	14.0	0;0	3;25	n	0.00	0.0	10.0	0;0	0;20	n	-	-	-	-	-	-	0.00	0.0	11.0	0;0	2;20	n	0.00	0.0	1.0	0;0	0;2	n	0.00	0.0	8.0	0;0	2;14	n	0.21	2.5	9.5	3;2	0;19	y	0.00	0.0	9.5	0;0	0;19	n	0.00	0.0	7.5	0;0	0;15	n	ENSMUSG00000010122.15	Slc47a1	chr11	protein_coding	solute carrier family 47, member 1
novel_NIR_3302	chr11	61256371	61258499	-	61254317	61258499	A3SS	ENSMUST00000010267.10	novel	0.06	4	61	4	61	n	0.00	0	40	0	40	n	0.00	0	4	0	4	n	0.09	8	80	8	80	n	0.06	2	33	2	33	n	0.00	0	4	0	4	n	0.02	1	60	1	60	n	0.20	2	8	2	8	y	0.00	0	50	0	50	n	0.09	10	98	10	98	n	0.03	2	59	2	59	n	0.15	12	70	12	70	y	ENSMUSG00000010122.15	Slc47a1	chr11	protein_coding	solute carrier family 47, member 1
novel_NIR_3303	chr11	61256371	61258499	-	61257720	61258499	A3SS&ES	ENSMUST00000131723.8	novel	0.12	4	29	4	29	n	0.00	0	11	0	11	n	-	-	-	-	-	-	0.24	8	25	8	25	y	0.09	2	20	2	20	n	-	-	-	-	-	-	0.05	1	20	1	20	n	0.50	2	2	2	2	y	0.00	0	14	0	14	n	0.34	10	19	10	19	n	0.10	2	19	2	19	n	0.44	12	15	12	15	y	ENSMUSG00000010122.15	Slc47a1	chr11	protein_coding	solute carrier family 47, member 1
novel_NIR_3304	chr11	61264282	61269455	-	61264282	61269005	5pMXE	ENSMUST00000148671.2	novel	0.67	2	1	2	1	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.17	3	15	3	15	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.10	1	9	1	9	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.21	3	11	3	11	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	ENSMUSG00000010122.15	Slc47a1	chr11	protein_coding	solute carrier family 47, member 1
novel_NIR_3305	chr11	61437737	61444336	-	61437737	61438696	A5SS&ES	ENSMUST00000108711.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000001036.18	Epn2	chr11	protein_coding	epsin 2
novel_NIR_3306	chr11	61437737	61444336	-	61437737	61438834	A5SS&ES	ENSMUST00000147501.8	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000001036.18	Epn2	chr11	protein_coding	epsin 2
novel_NIR_3307	chr11	61437737	61444336	-	61437737	61456648	A5SS	ENSMUST00000179936.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000001036.18	Epn2	chr11	protein_coding	epsin 2
novel_NIR_3308	chr11	61437737	61444336	-	61437737	61470393	A5SS	ENSMUST00000001063.15	novel	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000001036.18	Epn2	chr11	protein_coding	epsin 2
novel_NIR_3309	chr11	61437737	61444336	-	61437737;61438868	61438834;61444336	ES	ENSMUST00000146455.8	novel	0.00	0	0.5	0	1;0	n	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1.5	0	2;1	n	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	ENSMUSG00000001036.18	Epn2	chr11	protein_coding	epsin 2
novel_NIR_3310	chr11	61594327	61598191	+	61594543	61598191	A5SS	ENSMUST00000093019.6	novel	-	-	-	-	-	-	0.00	0	5	0	5	n	0.30	3	7	3	7	y	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.50	2	2	2	2	y	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.30	3	7	3	7	y	0.33	1	2	1	2	n	0.00	0	5	0	5	n	ENSMUSG00000042377.9	Fam83g	chr11	protein_coding	family with sequence similarity 83, member G
novel_NIR_3311	chr11	61794856	61800674	-	61794856;61795685	61795601;61800674	ES	ENSMUST00000102650.10	novel	0.00	0	12.5	0	11;14	n	0.00	0	7.5	0	7;8	n	0.00	0	21.0	0	19;23	n	0.00	0	10.5	0	12;9	n	0.00	0	20.5	0	17;24	n	0.00	0	8.0	0	8;8	n	0.00	0	16.0	0	21;11	n	0.00	0	9.5	0	10;9	n	0.16	2	10.5	2	11;10	y	0.00	0	16.0	0	18;14	n	0.00	0	8.5	0	8;9	n	0.00	0	14.0	0	17;11	n	ENSMUSG00000047804.16	Akap10	chr11	protein_coding	A kinase (PRKA) anchor protein 10
novel_NIR_3312	chr11	6216950	6217418	-	6216917	6217418	A3SS	ENSMUST00000151446.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000004393.11	Ddx56	chr11	protein_coding	DEAD box helicase 56
novel_NIR_3313	chr11	6216967	6217418	-	6216917	6217418	A3SS	ENSMUST00000151446.2	novel	0.33	1	2	1	2	n	-	-	-	-	-	-	0.20	1	4	1	4	n	0.33	1	2	1	2	n	0.00	0	6	0	6	n	0.25	1	3	1	3	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	1.00	4	0	4	0	y	0.33	1	2	1	2	n	0.83	5	1	5	1	y	ENSMUSG00000004393.11	Ddx56	chr11	protein_coding	DEAD box helicase 56
novel_NIR_3314	chr11	62206794	62207624	+	62206794	62218724	A3SS	ENSMUST00000154976.2	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	2	4	2	4	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	6	0	6	n	ENSMUSG00000042298.19	Ttc19	chr11	protein_coding	tetratricopeptide repeat domain 19
novel_NIR_3315	chr11	62221750	62224846	-	62221750	62224489	A5SS	ENSMUST00000101066.10	novel	0.36	24	42	24	42	y	0.37	20	34	20	34	y	0.21	14	53	14	53	y	0.30	20	46	20	46	y	0.19	14	61	14	61	y	0.27	13	35	13	35	y	0.25	19	58	19	58	y	0.23	12	40	12	40	y	0.36	20	36	20	36	y	0.25	29	85	29	85	y	0.26	16	46	16	46	y	0.25	20	59	20	59	y	ENSMUSG00000018501.18	Ncor1	chr11	protein_coding	nuclear receptor co-repressor 1
novel_NIR_3316	chr11	6224498	6224681	-	6224481	6224681	A3SS	ENSMUST00000132147.3	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	12	0	12	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	12	0	12	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000004394.13	Tmed4	chr11	protein_coding	transmembrane p24 trafficking protein 4
novel_NIR_3317	chr11	62250760	62257860	-	62250760	62257790	A5SS	ENSMUST00000151498.9	novel	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.00	0	28	0	28	n	0.00	0	31	0	31	n	0.22	5	18	5	18	y	0.00	0	9	0	9	n	0.00	0	25	0	25	n	0.00	0	27	0	27	n	0.00	0	14	0	14	n	0.00	0	33	0	33	n	0.00	0	15	0	15	n	0.00	0	29	0	29	n	ENSMUSG00000018501.18	Ncor1	chr11	protein_coding	nuclear receptor co-repressor 1
novel_NIR_3318	chr11	62324481	62329164	-	62310606	62329164	A3SS	ENSMUST00000101068.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000018501.18	Ncor1	chr11	protein_coding	nuclear receptor co-repressor 1
novel_NIR_3319	chr11	62403097	62403795	+	62403097	62403730	A3SS	ENSMUST00000014389.6	novel	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.00	0	17	0	17	n	0.00	0	25	0	25	n	0.00	0	19	0	19	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.20	2	8	2	8	y	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	26	0	26	n	ENSMUSG00000014245.9	Pigl	chr11	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class L
novel_NIR_3320	chr11	6242204	6246952	+	6241769	6246952	A5SS	ENSMUST00000101554.9	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.43	3	4	3	4	y	ENSMUSG00000020456.18	Ogdh	chr11	protein_coding	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)
novel_NIR_3321	chr11	6242204	6246952	+	6242291	6246952	A5SS	ENSMUST00000140765.8	novel	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.33	3	6	3	6	y	ENSMUSG00000020456.18	Ogdh	chr11	protein_coding	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)
novel_NIR_3322	chr11	6242204	6246952	+	6242513	6246952	A5SS	ENSMUST00000135124.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.43	3	4	3	4	y	ENSMUSG00000020456.18	Ogdh	chr11	protein_coding	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)
novel_NIR_3323	chr11	6242204	6246952	+	6242714	6246952	5pMXE	ENSMUST00000081894.5	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	3	3	3	3	y	ENSMUSG00000020456.18	Ogdh	chr11	protein_coding	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)
novel_NIR_3324	chr11	62427206	62429645	-	62427206	62429144	5pMXE	ENSMUST00000156349.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000018509.9	Cenpv	chr11	protein_coding	centromere protein V
novel_NIR_3325	chr11	62427206	62429645	-	62427206	62429205	5pMXE	ENSMUST00000123542.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000018509.9	Cenpv	chr11	protein_coding	centromere protein V
novel_NIR_3326	chr11	62539642	62540273	+	62539642	62555496	A3SS	ENSMUST00000062860.5	novel	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.57	4	3	4	3	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000048497.12	Mmgt2	chr11	protein_coding	membrane magnesium transporter 2
novel_NIR_3327	chr11	62539642	62540273	+	62539682	62540273	A5SS	ENSMUST00000148707.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000048497.12	Mmgt2	chr11	protein_coding	membrane magnesium transporter 2
novel_NIR_3328	chr11	62589727	62596295	-	62591452	62596295	3pMXE	ENSMUST00000150336.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000005267.14	Zfp287	chr11	protein_coding	zinc finger protein 287
novel_NIR_3329	chr11	62775991	62782768	+	62775991	62807458	A3SS	ENSMUST00000140377.2	novel	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	12	0	12	0	y	1.00	6	0	6	0	y	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	ENSMUSG00000014177.11	Tvp23b	chr11	protein_coding	trans-golgi network vesicle protein 23B
novel_NIR_3330	chr11	6348339	6348658	+	6348339	6348556	A3SS	ENSMUST00000109787.8	novel	0.07	2	25	2	25	n	0.16	3	16	3	16	y	0.20	4	16	4	16	y	0.07	3	41	3	41	n	0.03	1	31	1	31	n	0.06	1	16	1	16	n	0.19	10	42	10	42	y	0.00	0	9	0	9	n	0.16	4	21	4	21	y	0.07	3	38	3	38	n	0.09	3	29	3	29	n	0.09	2	21	2	21	n	ENSMUSG00000041164.16	Zmiz2	chr11	protein_coding	zinc finger, MIZ-type containing 2
novel_NIR_3331	chr11	6383814	6389376	-	6379225	6389376	A3SS	ENSMUST00000093346.6	novel	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.36	5	9	5	9	y	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	17	0	17	n	ENSMUSG00000041126.17	H2az2	chr11	protein_coding	H2A.Z histone variant 2
novel_NIR_3332	chr11	6388068	6389376	-	6379225	6389376	A3SS	ENSMUST00000093346.6	novel	0.25	2	6	2	6	y	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	17	0	17	n	ENSMUSG00000041126.17	H2az2	chr11	protein_coding	H2A.Z histone variant 2
novel_NIR_3333	chr11	6435734	6437671	+	6435734	6440804	A3SS	ENSMUST00000127488.2	novel	0.00	0	2	0	2	n	0.50	4	4	4	4	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000086839.8	Gm11973	chr11	lncRNA	predicted gene 11973
novel_NIR_3334	chr11	64889205	64889319	+	64889205	64889334	A3SS	ENSMUST00000071891.12	novel	0.00	0	40	0	40	n	0.11	5	40	5	40	n	0.05	2	38	2	38	n	0.06	3	48	3	48	n	0.09	6	61	6	61	n	0.00	0	24	0	24	n	0.02	1	44	1	44	n	0.00	0	17	0	17	n	0.17	7	34	7	34	y	0.04	3	64	3	64	n	0.02	1	48	1	48	n	0.00	0	53	0	53	n	ENSMUSG00000020549.15	Elac2	chr11	protein_coding	elaC ribonuclease Z 2
novel_NIR_3335	chr11	6497029	6497551	+	6497029	6534520	A3SS	ENSMUST00000159007.8	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.43	3	4	3	4	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	8	0	8	n	ENSMUSG00000000378.16	Ccm2	chr11	protein_coding	cerebral cavernous malformation 2
novel_NIR_3336	chr11	6535217	6539437	+	6535217	6540753	A3SS	ENSMUST00000161501.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.60	3	2	3	2	y	0.00	0	1	0	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	ENSMUSG00000000378.16	Ccm2	chr11	protein_coding	cerebral cavernous malformation 2
novel_NIR_3337	chr11	65626192	65634149	-	65626192	65636378	A5SS	ENSMUST00000138093.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033352.12	Map2k4	chr11	protein_coding	mitogen-activated protein kinase kinase 4
novel_NIR_3338	chr11	65634291	65647095	-	65610429	65647095	A3SS	ENSMUST00000140301.8	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000033352.12	Map2k4	chr11	protein_coding	mitogen-activated protein kinase kinase 4
novel_NIR_3339	chr11	65672259	65678962	-	65647197	65678962	A3SS	ENSMUST00000046963.10	novel	0.00	0	29	0	29	n	0.33	3	6	3	6	y	0.24	10	32	10	32	y	0.00	0	35	0	35	n	0.07	3	38	3	38	n	0.00	0	26	0	26	n	0.00	0	19	0	19	n	0.00	0	16	0	16	n	0.07	1	13	1	13	n	0.08	2	22	2	22	n	0.05	1	18	1	18	n	0.07	2	25	2	25	n	ENSMUSG00000033352.12	Map2k4	chr11	protein_coding	mitogen-activated protein kinase kinase 4
novel_NIR_3340	chr11	65672259	65678962	-	65666591	65678962	A3SS	ENSMUST00000152096.8	novel	0.00	0	7	0	7	n	0.50	3	3	3	3	y	0.43	10	13	10	13	y	0.00	0	11	0	11	n	0.27	3	8	3	8	y	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.25	2	6	2	6	y	0.33	1	2	1	2	n	0.22	2	7	2	7	y	ENSMUSG00000033352.12	Map2k4	chr11	protein_coding	mitogen-activated protein kinase kinase 4
novel_NIR_3341	chr11	65712840	65713654	+	65712840	65713651	A3SS	ENSMUST00000071465.9	novel	0.00	0	7	0	7	n	0.20	1	4	1	4	n	0.42	8	11	8	11	y	0.00	0	6	0	6	n	0.21	3	11	3	11	y	0.50	2	2	2	2	y	0.15	2	11	2	11	y	0.20	1	4	1	4	n	0.67	2	1	2	1	y	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.14	1	6	1	6	n	ENSMUSG00000018347.17	Zkscan6	chr11	protein_coding	zinc finger with KRAB and SCAN domains 6
novel_NIR_3342	chr11	66918300	66920792	+	66917020	66920792	A5SS	ENSMUST00000079077.12	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000050270.13	Tmem220	chr11	protein_coding	transmembrane protein 220
novel_NIR_3343	chr11	66942604	66942949	-	66942604	66943361	A5SS	ENSMUST00000146338.8	novel	0.14	1	6	1	6	n	0.00	0	16	0	16	n	0.06	2	30	2	30	n	0.00	0	24	0	24	n	0.03	1	33	1	33	n	0.06	1	15	1	15	n	0.00	0	31	0	31	n	0.17	5	25	5	25	y	0.00	0	19	0	19	n	0.00	0	26	0	26	n	0.04	1	24	1	24	n	0.06	2	29	2	29	n	ENSMUSG00000020910.17	Adprm	chr11	protein_coding	ADP-ribose/CDP-alcohol diphosphatase, manganese dependent
novel_NIR_3344	chr11	66943742	66944598	+	66943742	66944601	A3SS	ENSMUST00000108690.10	novel	0.07	1	14	1	14	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	19	0	19	n	0.20	4	16	4	16	y	0.00	0	13	0	13	n	0.00	0	25	0	25	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.06	1	15	1	15	n	0.05	1	21	1	21	n	ENSMUSG00000069844.13	Sco1	chr11	protein_coding	SCO1 cytochrome c oxidase assembly protein
novel_NIR_3345	chr11	67524003	67534107	+	67520516	67534107	A5SS	ENSMUST00000108681.9	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.38	3	5	3	5	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000033066.17	Gas7	chr11	protein_coding	growth arrest specific 7
novel_NIR_3346	chr11	67524106	67534107	+	67520516	67534107	A5SS	ENSMUST00000108681.9	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000033066.17	Gas7	chr11	protein_coding	growth arrest specific 7
novel_NIR_3347	chr11	68736250	68743184	-	68736250	68750749	A5SS	ENSMUST00000144300.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000018736.15	Ndel1	chr11	protein_coding	nudE neurodevelopment protein 1 like 1
novel_NIR_3348	chr11	68736250	68743184	-	68736250	68755748	A5SS	ENSMUST00000127469.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000018736.15	Ndel1	chr11	protein_coding	nudE neurodevelopment protein 1 like 1
novel_NIR_3349	chr11	68736250	68743184	-	68736250	68762607	A5SS	ENSMUST00000101017.9	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000018736.15	Ndel1	chr11	protein_coding	nudE neurodevelopment protein 1 like 1
novel_NIR_3350	chr11	68794145	68794798	+	68794145	68797412	A3SS	ENSMUST00000138973.2	novel	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	3	6	3	6	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	ENSMUSG00000060938.15	Rpl26	chr11	protein_coding	ribosomal protein L26
novel_NIR_3351	chr11	68834341	68837192	-	68835655	68837192	A3SS	ENSMUST00000065040.13	novel	0.11	1	8	1	8	n	0.25	1	3	1	3	n	0.26	5	14	5	14	y	0.00	0	6	0	6	n	0.30	3	7	3	7	y	0.33	1	2	1	2	n	0.00	0	12	0	12	n	0.20	1	4	1	4	n	0.22	2	7	2	7	y	0.62	5	3	5	3	y	-	-	-	-	-	-	0.17	1	5	1	5	n	ENSMUSG00000052921.14	Arhgef15	chr11	protein_coding	Rho guanine nucleotide exchange factor (GEF) 15
novel_NIR_3352	chr11	68837285	68837387	-	68837296	68837387	A3SS	ENSMUST00000065040.13	novel	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	ENSMUSG00000052921.14	Arhgef15	chr11	protein_coding	Rho guanine nucleotide exchange factor (GEF) 15
novel_NIR_3353	chr11	68837525	68837810	-	68837296	68837810	A3SS	ENSMUST00000131686.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000052921.14	Arhgef15	chr11	protein_coding	Rho guanine nucleotide exchange factor (GEF) 15
novel_NIR_3354	chr11	68837525	68837810	-	68837469	68837810	A3SS	ENSMUST00000065040.13	novel	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.18	2	9	2	9	y	0.00	0	12	0	12	n	0.00	0	9	0	9	n	ENSMUSG00000052921.14	Arhgef15	chr11	protein_coding	Rho guanine nucleotide exchange factor (GEF) 15
novel_NIR_3355	chr11	68837913	68838062	-	68837962	68838062	A3SS	ENSMUST00000065040.13	novel	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.33	2	4	2	4	y	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	ENSMUSG00000052921.14	Arhgef15	chr11	protein_coding	Rho guanine nucleotide exchange factor (GEF) 15
novel_NIR_3356	chr11	68881644	68881894	-	68881644	68881866	A5SS	ENSMUST00000021282.12	novel	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.17	2	10	2	10	y	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	ENSMUSG00000020899.17	Pfas	chr11	protein_coding	phosphoribosylformylglycinamidine synthase (FGAR amidotransferase)
novel_NIR_3357	chr11	68881721	68881866	-	68881644	68881866	A3SS	ENSMUST00000021282.12	novel	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.22	2	7	2	7	y	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	ENSMUSG00000020899.17	Pfas	chr11	protein_coding	phosphoribosylformylglycinamidine synthase (FGAR amidotransferase)
novel_NIR_3358	chr11	68883926	68884123	-	68883864	68884123	A3SS	ENSMUST00000021282.12	novel	0.22	2	7	2	7	y	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.00	0	7	0	7	n	ENSMUSG00000020899.17	Pfas	chr11	protein_coding	phosphoribosylformylglycinamidine synthase (FGAR amidotransferase)
novel_NIR_3359	chr11	68885942	68888490	-	68885157	68888490	A3SS	ENSMUST00000021282.12	novel	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.33	3	6	3	6	y	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	ENSMUSG00000020899.17	Pfas	chr11	protein_coding	phosphoribosylformylglycinamidine synthase (FGAR amidotransferase)
novel_NIR_3360	chr11	68892165	68892559	-	68892122	68892559	A3SS	ENSMUST00000021282.12	novel	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.00	0	8	0	8	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000020899.17	Pfas	chr11	protein_coding	phosphoribosylformylglycinamidine synthase (FGAR amidotransferase)
novel_NIR_3361	chr11	68894698;68898378	68898284;68899229	-	68894698	68899229	cassetteExon	ENSMUST00000021282.12	novel	0.00	0.0	3	0;0	3	n	1.00	0.5	0	1;0	0	n	0.27	1.5	4	1;2	4	n	1.00	4.0	0	0;8	0	n	0.33	0.5	1	0;1	1	n	0.67	2.0	1	3;1	1	n	1.00	2.5	0	1;4	0	n	1.00	1.5	0	1;2	0	n	-	-	-	-	-	-	1.00	4.0	0	4;4	0	y	1.00	0.5	0	0;1	0	n	1.00	1.5	0	2;1	0	n	ENSMUSG00000020899.17	Pfas	chr11	protein_coding	phosphoribosylformylglycinamidine synthase (FGAR amidotransferase)
novel_NIR_3362	chr11	68898378	68899229	-	68894698	68899229	A3SS	ENSMUST00000021282.12	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.33	2	4	2	4	n	1.00	8	0	8	0	y	0.50	1	1	1	1	n	0.50	1	1	1	1	n	1.00	4	0	4	0	n	1.00	2	0	2	0	n	-	-	-	-	-	-	1.00	4	0	4	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000020899.17	Pfas	chr11	protein_coding	phosphoribosylformylglycinamidine synthase (FGAR amidotransferase)
novel_NIR_3363	chr11	68980052	68980402	+	68980052	68980557	A3SS	ENSMUST00000021273.13	novel	0.29	11	27	11	27	y	0.22	7	25	7	25	y	0.05	2	37	2	37	n	0.12	5	37	5	37	n	0.08	3	35	3	35	n	0.17	5	24	5	24	y	0.16	9	49	9	49	y	0.10	2	19	2	19	n	0.29	8	20	8	20	y	0.23	15	49	15	49	y	0.19	4	17	4	17	y	0.11	5	40	5	40	n	ENSMUSG00000020894.17	Vamp2	chr11	protein_coding	vesicle-associated membrane protein 2
novel_NIR_3364	chr11	68992398	68992535	+	68992398	68992561	A3SS	ENSMUST00000102605.3	novel	-	-	-	-	-	-	0.38	3	5	3	5	y	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020893.18	Per1	chr11	protein_coding	period circadian clock 1
novel_NIR_3365	chr11	69209866	69210179	-	69190700	69210179	A3SS	ENSMUST00000176938.2	novel	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	8	0	8	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000032782.20	Cntrob	chr11	protein_coding	centrobin, centrosomal BRCA2 interacting protein
novel_NIR_3366	chr11	69209866	69210179	-	69209870	69210179	A3SS	ENSMUST00000123176.8	novel	0.27	4	11	4	11	y	0.06	1	15	1	15	n	0.12	1	7	1	7	n	0.11	1	8	1	8	n	0.40	8	12	8	12	y	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.14	2	12	2	12	n	0.00	0	10	0	10	n	0.14	2	12	2	12	n	0.00	0	8	0	8	n	0.25	4	12	4	12	y	ENSMUSG00000032782.20	Cntrob	chr11	protein_coding	centrobin, centrosomal BRCA2 interacting protein
novel_NIR_3367	chr11	69212759	69213507	-	69212759	69213516	A5SS	ENSMUST00000092973.6	novel	0.33	1	2	1	2	n	0.57	4	3	4	3	y	0.10	1	9	1	9	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	ENSMUSG00000032782.20	Cntrob	chr11	protein_coding	centrobin, centrosomal BRCA2 interacting protein
novel_NIR_3368	chr11	69239350	69239536	-	69239347	69239536	A3SS	ENSMUST00000108661.8	novel	0.12	5	37	5	37	n	0.06	2	32	2	32	n	0.10	6	54	6	54	n	0.02	1	57	1	57	n	0.06	5	82	5	82	n	0.07	2	26	2	26	n	0.02	1	51	1	51	n	0.08	4	45	4	45	n	0.07	3	43	3	43	n	0.06	4	63	4	63	n	0.07	5	64	5	64	n	0.25	10	30	10	30	y	ENSMUSG00000018474.19	Chd3	chr11	protein_coding	chromodomain helicase DNA binding protein 3
novel_NIR_3369	chr11	69254567	69254799	-	69254570	69254799	A3SS	ENSMUST00000108661.8	novel	0.22	4	14	4	14	y	0.35	7	13	7	13	y	0.03	1	35	1	35	n	0.12	5	37	5	37	n	0.13	7	46	7	46	n	0.00	0	12	0	12	n	0.11	4	32	4	32	n	0.00	0	23	0	23	n	0.05	1	21	1	21	n	0.03	1	28	1	28	n	0.16	4	21	4	21	y	0.05	2	39	2	39	n	ENSMUSG00000018474.19	Chd3	chr11	protein_coding	chromodomain helicase DNA binding protein 3
novel_NIR_3370	chr11	69255630	69256885	-	69255630	69259962	A5SS	ENSMUST00000108661.8	novel	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	29	0	29	n	0.10	3	27	3	27	n	0.03	1	28	1	28	n	0.06	1	15	1	15	n	0.00	0	20	0	20	n	0.18	3	14	3	14	y	0.09	1	10	1	10	n	0.00	0	27	0	27	n	0.21	3	11	3	11	y	0.00	0	9	0	9	n	ENSMUSG00000018474.19	Chd3	chr11	protein_coding	chromodomain helicase DNA binding protein 3
novel_NIR_3371	chr11	69255630	69257339	-	69255630	69259962	A5SS	ENSMUST00000108661.8	novel	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	29	0	29	n	0.00	0	27	0	27	n	0.00	0	28	0	28	n	0.00	0	15	0	15	n	0.00	0	20	0	20	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.00	0	27	0	27	n	0.15	2	11	2	11	y	0.00	0	9	0	9	n	ENSMUSG00000018474.19	Chd3	chr11	protein_coding	chromodomain helicase DNA binding protein 3
novel_NIR_3372	chr11	69286798	69287000	+	69286798	69286974	A3SS	ENSMUST00000082283.10	novel	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000059278.10	Naa38	chr11	protein_coding	N(alpha)-acetyltransferase 38, NatC auxiliary subunit
novel_NIR_3373	chr11	69292810	69292902	-	69292807	69292902	A3SS	ENSMUST00000094077.5	novel	0.10	3	28	3	28	n	0.00	0	13	0	13	n	0.00	0	28	0	28	n	0.18	3	14	3	14	y	0.05	2	35	2	35	n	0.00	0	22	0	22	n	0.12	4	29	4	29	n	0.23	7	24	7	24	y	0.00	0	26	0	26	n	0.03	1	36	1	36	n	0.00	0	28	0	28	n	0.06	2	33	2	33	n	ENSMUSG00000018476.8	Kdm6b	chr11	protein_coding	KDM1 lysine (K)-specific demethylase 6B
novel_NIR_3374	chr11	69299607	69300118	-	69299607	69304359	A5SS	ENSMUST00000094077.5	novel	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.14	1	6	1	6	n	0.44	4	5	4	5	y	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.11	1	8	1	8	n	1.00	1	0	1	0	n	0.06	1	15	1	15	n	ENSMUSG00000018476.8	Kdm6b	chr11	protein_coding	KDM1 lysine (K)-specific demethylase 6B
novel_NIR_3375	chr11	69299607	69300658	-	69299607	69304359	A5SS	ENSMUST00000094077.5	novel	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.67	4	2	4	2	y	0.17	2	10	2	10	y	0.15	2	11	2	11	y	0.25	2	6	2	6	y	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.12	2	15	2	15	n	ENSMUSG00000018476.8	Kdm6b	chr11	protein_coding	KDM1 lysine (K)-specific demethylase 6B
novel_NIR_3376	chr11	69299607	69301785	-	69299607	69304359	A5SS	ENSMUST00000094077.5	novel	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.67	4	2	4	2	y	0.17	2	10	2	10	y	0.31	5	11	5	11	y	0.14	1	6	1	6	n	0.38	3	5	3	5	y	0.43	3	4	3	4	y	0.50	2	2	2	2	y	0.27	3	8	3	8	y	-	-	-	-	-	-	0.12	2	15	2	15	n	ENSMUSG00000018476.8	Kdm6b	chr11	protein_coding	KDM1 lysine (K)-specific demethylase 6B
novel_NIR_3377	chr11	69343300	69343716	+	69339445	69343716	A5SS	ENSMUST00000124108.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000086591.2	Dnah2os	chr11	lncRNA	dynein, axonemal, heavy chain 2, opposite strand
novel_NIR_3378	chr11	69548356	69548730	-	69548356	69549392	A5SS	ENSMUST00000129224.8	novel	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000018761.15	Mpdu1	chr11	protein_coding	mannose-P-dolichol utilization defect 1
novel_NIR_3379	chr11	69556756	69556846	-	69556192	69556846	A3SS	ENSMUST00000154124.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000018774.14	Cd68	chr11	protein_coding	CD68 antigen
novel_NIR_3380	chr11	69561818	69563105	-	69561573	69563105	A3SS	ENSMUST00000139299.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000059796.17	Eif4a1	chr11	protein_coding	eukaryotic translation initiation factor 4A1
novel_NIR_3381	chr11	69561818	69563105	-	69561927	69563105	A3SS	ENSMUST00000142214.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000059796.17	Eif4a1	chr11	protein_coding	eukaryotic translation initiation factor 4A1
novel_NIR_3382	chr11	69572973	69574253	+	69572973;69573825	69573643;69574253	ES	ENSMUST00000144033.2	novel	-	-	-	-	-	-	0.75	3	1.0	3	2;0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	ENSMUSG00000085890.8	Tnfsf13os	chr11	lncRNA	tumor necrosis factor (ligand) superfamily, member 13, opposite strand
novel_NIR_3383	chr11	69718093	69718542	-	69718166	69718542	A3SS	ENSMUST00000056484.10	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000051790.16	Nlgn2	chr11	protein_coding	neuroligin 2
novel_NIR_3384	chr11	69729424	69729746	+	69729399	69729746	A5SS	ENSMUST00000133967.8	novel	0.07	7	93	7	93	n	0.06	7	118	7	118	n	0.08	8	97	8	97	n	0.12	10	75	10	75	n	0.05	7	121	7	121	n	0.07	4	53	4	53	n	0.05	8	156	8	156	n	0.10	6	52	6	52	n	0.14	12	73	12	73	n	0.09	9	92	9	92	n	0.17	19	96	19	96	y	0.06	7	103	7	103	n	ENSMUSG00000070394.11	Tmem256	chr11	protein_coding	transmembrane protein 256
novel_NIR_3385	chr11	69737517	69737728	+	69737517	69737734	A3SS	ENSMUST00000152566.8	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.40	4	6	4	6	y	0.09	1	10	1	10	n	0.00	0	10	0	10	n	0.14	1	6	1	6	n	0.20	2	8	2	8	y	0.00	0	8	0	8	n	0.33	2	4	2	4	y	0.10	1	9	1	9	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	ENSMUSG00000019461.13	Plscr3	chr11	protein_coding	phospholipid scramblase 3
novel_NIR_3386	chr11	69737517	69737820	+	69737517	69737734	A3SS	ENSMUST00000152566.8	novel	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.25	2	6	2	6	y	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.33	1	2	1	2	n	0.00	0	11	0	11	n	ENSMUSG00000019461.13	Plscr3	chr11	protein_coding	phospholipid scramblase 3
novel_NIR_3387	chr11	69738525	69738638	+	69738525	69738629	A3SS	ENSMUST00000108632.8	novel	0.00	0	14	0	14	n	0.00	0	18	0	18	n	0.00	0	17	0	17	n	0.00	0	12	0	12	n	0.00	0	22	0	22	n	0.00	0	11	0	11	n	0.00	0	22	0	22	n	0.00	0	16	0	16	n	0.00	0	18	0	18	n	0.19	3	13	3	13	y	0.00	0	19	0	19	n	0.00	0	16	0	16	n	ENSMUSG00000019461.13	Plscr3	chr11	protein_coding	phospholipid scramblase 3
novel_NIR_3388	chr11	69797429	69797536	+	69797429	69797552	A3SS	ENSMUST00000177138.8	novel	0.12	2	15	2	15	n	0.00	0	12	0	12	n	0.00	0	24	0	24	n	0.00	0	20	0	20	n	0.00	0	22	0	22	n	0.30	3	7	3	7	y	0.00	0	16	0	16	n	0.00	0	19	0	19	n	0.00	0	17	0	17	n	0.00	0	17	0	17	n	0.00	0	13	0	13	n	0.07	1	14	1	14	n	ENSMUSG00000047284.15	Neurl4	chr11	protein_coding	neuralized E3 ubiquitin protein ligase 4
novel_NIR_3389	chr11	69797429	69797536	+	69797429	69797556	A3SS	ENSMUST00000129475.9	novel	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	3	0	3	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	ENSMUSG00000047284.15	Neurl4	chr11	protein_coding	neuralized E3 ubiquitin protein ligase 4
novel_NIR_3390	chr11	69797710	69797810	+	69797714	69797810	A5SS	ENSMUST00000177138.8	novel	0.06	2	31	2	31	n	0.10	2	18	2	18	n	0.05	1	20	1	20	n	0.16	6	32	6	32	y	0.05	2	38	2	38	n	0.04	1	22	1	22	n	0.16	3	16	3	16	y	0.07	1	13	1	13	n	0.05	1	19	1	19	n	0.07	2	27	2	27	n	0.00	0	13	0	13	n	0.19	5	21	5	21	y	ENSMUSG00000047284.15	Neurl4	chr11	protein_coding	neuralized E3 ubiquitin protein ligase 4
novel_NIR_3391	chr11	69803480	69803953	+	69803379	69803953	A5SS	ENSMUST00000132183.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000047284.15	Neurl4	chr11	protein_coding	neuralized E3 ubiquitin protein ligase 4
novel_NIR_3392	chr11	69803748	69803953	+	69803379	69803953	A5SS	ENSMUST00000132183.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000047284.15	Neurl4	chr11	protein_coding	neuralized E3 ubiquitin protein ligase 4
novel_NIR_3393	chr11	69807119	69807250	+	69807119	69807246	A3SS	ENSMUST00000072581.9	novel	0.16	7	36	7	36	y	0.00	0	75	0	75	n	0.10	6	56	6	56	n	0.08	3	35	3	35	n	0.07	4	51	4	51	n	0.07	2	25	2	25	n	0.08	5	54	5	54	n	0.15	5	28	5	28	y	0.11	6	47	6	47	n	0.10	5	43	5	43	n	0.12	8	60	8	60	n	0.08	4	47	4	47	n	ENSMUSG00000023170.15	Gps2	chr11	protein_coding	G protein pathway suppressor 2
novel_NIR_3394	chr11	69810162	69812013	-	69810162	69810275	A5SS&ES	ENSMUST00000070996.11	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	3	3	3	3	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	ENSMUSG00000078812.11	Eif5a	chr11	protein_coding	eukaryotic translation initiation factor 5A
novel_NIR_3395	chr11	69810162	69812013	-	69810162	69811167	5pMXE	ENSMUST00000108610.8	novel	0.00	0	22	0	22	n	0.00	0	18	0	18	n	0.00	0	25	0	25	n	0.05	1	20	1	20	n	0.16	3	16	3	16	y	0.04	1	24	1	24	n	0.00	0	34	0	34	n	0.00	0	16	0	16	n	0.04	1	26	1	26	n	0.11	3	25	3	25	n	0.04	1	23	1	23	n	0.00	0	19	0	19	n	ENSMUSG00000078812.11	Eif5a	chr11	protein_coding	eukaryotic translation initiation factor 5A
novel_NIR_3396	chr11	69810162	69812013	-	69810162	69811627	5pMXE	ENSMUST00000108612.8	novel	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.10	1	9	1	9	n	0.25	3	9	3	9	y	0.20	1	4	1	4	n	0.00	0	22	0	22	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.18	3	14	3	14	y	0.09	1	10	1	10	n	0.00	0	9	0	9	n	ENSMUSG00000078812.11	Eif5a	chr11	protein_coding	eukaryotic translation initiation factor 5A
novel_NIR_3397	chr11	69810162	69812013	-	69810162	69811850	5pMXE	ENSMUST00000108609.8	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.75	3	1	3	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000078812.11	Eif5a	chr11	protein_coding	eukaryotic translation initiation factor 5A
novel_NIR_3398	chr11	69810162	69812013	-	69810162	69811868	5pMXE	ENSMUST00000108608.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.75	3	1	3	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000078812.11	Eif5a	chr11	protein_coding	eukaryotic translation initiation factor 5A
novel_NIR_3399	chr11	69860022	69861387	-	69860022	69860161	5pMXE	ENSMUST00000151766.2	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000018565.18	Elp5	chr11	protein_coding	elongator acetyltransferase complex subunit 5
novel_NIR_3400	chr11	69871260	69872033	-	69871388	69872033	A3SS	ENSMUST00000108594.8	novel	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	10	0	10	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	7	0	7	n	0.50	2	2	2	2	y	ENSMUSG00000018565.18	Elp5	chr11	protein_coding	elongator acetyltransferase complex subunit 5
novel_NIR_3401	chr11	69873150	69875080	+	69874594	69875080	5pMXE	ENSMUST00000141623.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000018559.17	Ctdnep1	chr11	protein_coding	CTD nuclear envelope phosphatase 1
novel_NIR_3402	chr11	69882729	69883191	+	69882987	69883191	A5SS	ENSMUST00000139007.2	novel	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.50	3	3	3	3	y	0.60	3	2	3	2	y	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000018567.15	Gabarap	chr11	protein_coding	gamma-aminobutyric acid receptor associated protein
novel_NIR_3403	chr11	69905680	69905943	-	69905529	69905943	A3SS	ENSMUST00000018718.8	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.12	3	23	3	23	n	0.00	0	2	0	2	n	0.80	4	1	4	1	y	0.50	2	2	2	2	y	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.60	3	2	3	2	y	0.50	1	1	1	1	n	1.00	2	0	2	0	y	ENSMUSG00000018574.15	Acadvl	chr11	protein_coding	acyl-Coenzyme A dehydrogenase, very long chain
novel_NIR_3404	chr11	69944973	69945119	+	69944973	69945707	A3SS	ENSMUST00000146411.9	novel	0.37	10	17	10	17	y	0.15	5	29	5	29	n	0.20	7	28	7	28	n	0.00	0	32	0	32	n	0.09	4	42	4	42	n	0.00	0	26	0	26	n	0.06	2	31	2	31	n	0.08	3	36	3	36	n	0.00	0	31	0	31	n	0.08	3	34	3	34	n	0.00	0	33	0	33	n	0.06	2	32	2	32	n	ENSMUSG00000020884.16	Asgr1	chr11	protein_coding	asialoglycoprotein receptor 1
novel_NIR_3405	chr11	69945792	69947063	+	69946792	69947063	5pMXE	ENSMUST00000123369.3	novel	0.57	4	3	4	3	y	0.90	9	1	9	1	y	1.00	10	0	10	0	y	0.89	8	1	8	1	y	1.00	5	0	5	0	y	0.00	0	1	0	1	n	1.00	5	0	5	0	y	1.00	5	0	5	0	y	0.50	2	2	2	2	y	1.00	14	0	14	0	y	1.00	5	0	5	0	y	0.67	6	3	6	3	y	ENSMUSG00000020884.16	Asgr1	chr11	protein_coding	asialoglycoprotein receptor 1
novel_NIR_3406	chr11	69946921	69947063	+	69946792	69947063	A5SS	ENSMUST00000123369.3	novel	0.25	1	3	1	3	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.50	3	3	3	3	y	ENSMUSG00000020884.16	Asgr1	chr11	protein_coding	asialoglycoprotein receptor 1
novel_NIR_3407	chr11	69983616	69983870	+	69983616	69983809	A3SS	ENSMUST00000124721.2	novel	0.10	1	9	1	9	n	0.25	4	12	4	12	y	0.27	3	8	3	8	y	0.09	2	21	2	21	n	0.35	8	15	8	15	y	0.18	2	9	2	9	y	0.04	1	25	1	25	n	0.00	0	11	0	11	n	0.25	6	18	6	18	y	0.00	0	23	0	23	n	0.38	11	18	11	18	y	0.12	4	30	4	30	n	ENSMUSG00000040963.16	Asgr2	chr11	protein_coding	asialoglycoprotein receptor 2
novel_NIR_3408	chr11	69983616	69983870	+	69983616	69987633	A3SS	ENSMUST00000143772.8	novel	0.06	1	15	1	15	n	1.00	4	0	4	0	n	1.00	3	0	3	0	n	1.00	2	0	2	0	y	1.00	8	0	8	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.30	6	14	6	14	y	-	-	-	-	-	-	1.00	11	0	11	0	y	1.00	4	0	4	0	n	ENSMUSG00000040963.16	Asgr2	chr11	protein_coding	asialoglycoprotein receptor 2
novel_NIR_3409	chr11	69983616	69983889	+	69983616	69983809	A3SS	ENSMUST00000124721.2	novel	0.10	1	9	1	9	n	0.65	22	12	22	12	y	0.70	19	8	19	8	y	0.00	0	21	0	21	n	0.58	21	15	21	15	y	0.62	15	9	15	9	y	0.42	18	25	18	25	y	0.00	0	11	0	11	n	0.56	23	18	23	18	y	0.65	43	23	43	23	y	0.00	0	18	0	18	n	0.00	0	30	0	30	n	ENSMUSG00000040963.16	Asgr2	chr11	protein_coding	asialoglycoprotein receptor 2
novel_NIR_3410	chr11	69983616	69983889	+	69983616	69987633	A3SS	ENSMUST00000143772.8	novel	0.06	1	15	1	15	n	1.00	22	0	22	0	n	1.00	19	0	19	0	n	-	-	-	-	-	-	1.00	21	0	21	0	y	1.00	15	0	15	0	y	1.00	18	0	18	0	y	-	-	-	-	-	-	0.62	23	14	23	14	y	1.00	43	0	43	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040963.16	Asgr2	chr11	protein_coding	asialoglycoprotein receptor 2
novel_NIR_3411	chr11	69983616	69987628	+	69983616	69987633	A3SS	ENSMUST00000143772.8	novel	0.00	0	15	0	15	n	1.00	13	0	13	0	y	-	-	-	-	-	-	1.00	8	0	8	0	y	1.00	20	0	20	0	y	1.00	1	0	1	0	n	1.00	23	0	23	0	y	1.00	8	0	8	0	y	0.26	5	14	5	14	y	1.00	5	0	5	0	y	1.00	25	0	25	0	y	-	-	-	-	-	-	ENSMUSG00000040963.16	Asgr2	chr11	protein_coding	asialoglycoprotein receptor 2
novel_NIR_3412	chr11	70106205	70106963	+	70105924	70106963	A5SS	ENSMUST00000149880.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000040938.17	Slc16a11	chr11	protein_coding	solute carrier family 16 (monocarboxylic acid transporters), member 11
novel_NIR_3413	chr11	70126290	70126823	-	70126290	70126522	A5SS&ES	ENSMUST00000134700.8	novel	0.10	3	27	3	27	n	0.08	3	33	3	33	n	0.30	10	23	10	23	y	0.16	4	21	4	21	y	0.00	0	25	0	25	n	0.00	0	9	0	9	n	0.11	4	32	4	32	n	0.06	1	16	1	16	n	0.00	0	19	0	19	n	0.00	0	33	0	33	n	0.00	0	27	0	27	n	0.07	2	26	2	26	n	ENSMUSG00000020831.19	0610010K14Rik	chr11	protein_coding	RIKEN cDNA 0610010K14 gene
novel_NIR_3414	chr11	70126290	70126823	-	70126290	70126850	A5SS	ENSMUST00000108577.8	novel	1.00	3	0	3	0	y	0.30	3	7	3	7	y	0.67	10	5	10	5	y	0.44	4	5	4	5	y	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.44	4	5	4	5	y	1.00	1	0	1	0	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.50	2	2	2	2	y	ENSMUSG00000020831.19	0610010K14Rik	chr11	protein_coding	RIKEN cDNA 0610010K14 gene
novel_NIR_3415	chr11	70126290	70126823	-	70126294	70126823	A3SS	ENSMUST00000108575.9	novel	0.38	3	5	3	5	y	0.21	3	11	3	11	y	0.43	10	13	10	13	y	0.40	4	6	4	6	y	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.31	4	9	4	9	y	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.33	2	4	2	4	y	ENSMUSG00000020831.19	0610010K14Rik	chr11	protein_coding	RIKEN cDNA 0610010K14 gene
novel_NIR_3416	chr11	70329217	70329327	+	70329217	70329474	A3SS	ENSMUST00000084954.13	novel	0.25	13	40	13	40	y	0.15	7	41	7	41	y	0.00	0	34	0	34	n	0.20	5	20	5	20	y	0.13	6	40	6	40	n	0.00	0	27	0	27	n	0.03	2	56	2	56	n	0.05	1	20	1	20	n	0.16	5	27	5	27	y	0.13	7	47	7	47	n	0.14	6	37	6	37	n	0.12	6	42	6	42	n	ENSMUSG00000060216.16	Arrb2	chr11	protein_coding	arrestin, beta 2
novel_NIR_3417	chr11	70345379	70345985	-	70345383	70345985	A3SS	ENSMUST00000126391.2	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000018920.12	Cxcl16	chr11	protein_coding	chemokine (C-X-C motif) ligand 16
novel_NIR_3418	chr11	70405122	70410174	-	70405122	70405237	5pMXE	ENSMUST00000021179.4	novel	1.00	76	0	76	0	y	1.00	71	0	71	0	y	1.00	45	0	45	0	y	1.00	61	0	61	0	y	1.00	91	0	91	0	y	1.00	35	0	35	0	y	1.00	73	0	73	0	y	1.00	32	0	32	0	y	1.00	68	0	68	0	y	1.00	93	0	93	0	y	1.00	77	0	77	0	y	1.00	61	0	61	0	y	ENSMUSG00000020830.4	Vmo1	chr11	protein_coding	vitelline membrane outer layer 1 homolog (chicken)
novel_NIR_3419	chr11	70405122	70410970	-	70405122	70405237	5pMXE	ENSMUST00000021179.4	novel	1.00	8	0	8	0	y	1.00	13	0	13	0	y	1.00	18	0	18	0	y	1.00	3	0	3	0	y	1.00	7	0	7	0	y	1.00	10	0	10	0	y	1.00	8	0	8	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	9	0	9	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	ENSMUSG00000020830.4	Vmo1	chr11	protein_coding	vitelline membrane outer layer 1 homolog (chicken)
novel_NIR_3420	chr11	70431440	70431687	+	70431440	70431671	A3SS	ENSMUST00000018429.12	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.09	1	10	1	10	n	0.00	0	9	0	9	n	0.25	2	6	2	6	y	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	ENSMUSG00000020828.14	Pld2	chr11	protein_coding	phospholipase D2
novel_NIR_3421	chr11	70433921	70442006	+	70433921	70434954	3pMXE	ENSMUST00000108556.2	novel	0.00	0	5	0	5	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.20	1	4	1	4	n	0.00	0	6	0	6	n	0.33	2	4	2	4	y	0.00	0	7	0	7	n	ENSMUSG00000020828.14	Pld2	chr11	protein_coding	phospholipase D2
novel_NIR_3422	chr11	70433921	70442006	+	70433921;70435103	70434954;70442006	ES	ENSMUST00000018429.12	novel	0.00	0	4.0	0	5;3	n	0.20	1	4.0	1	5;3	n	0.00	0	5.0	0	2;8	n	0.00	0	6.5	0	8;5	n	0.17	1	5.0	1	3;7	n	0.00	0	5.0	0	4;6	n	0.00	0	6.5	0	10;3	n	0.00	0	0.5	0	0;1	n	0.18	1	4.5	1	4;5	n	0.00	0	7.5	0	6;9	n	0.31	2	4.5	2	4;5	y	0.00	0	6.5	0	7;6	n	ENSMUSG00000020828.14	Pld2	chr11	protein_coding	phospholipase D2
novel_NIR_3423	chr11	70446207	70446734	+	70445990	70446734	A5SS	ENSMUST00000179806.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000020828.14	Pld2	chr11	protein_coding	phospholipase D2
novel_NIR_3424	chr11	70446207	70446734	+	70446207;70446556	70446422;70446734	ES	ENSMUST00000018429.12	novel	0.00	0	9.0	0	5;13	n	0.11	2	16.5	2	15;18	n	0.06	1	16.5	1	13;20	n	0.00	0	11.0	0	8;14	n	0.00	0	18.5	0	15;22	n	0.00	0	9.5	0	10;9	n	0.00	0	14.0	0	6;22	n	0.00	0	9.5	0	8;11	n	0.00	0	10.0	0	10;10	n	0.17	2	10.0	2	8;12	y	0.07	1	14.0	1	10;18	n	0.00	0	15.5	0	14;17	n	ENSMUSG00000020828.14	Pld2	chr11	protein_coding	phospholipase D2
novel_NIR_3425	chr11	70538139	70538676	+	70538139	70538567	A3SS	ENSMUST00000141537.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000040746.16	Rnf167	chr11	protein_coding	ring finger protein 167
novel_NIR_3426	chr11	70543801	70545175	-	70543780	70545175	A3SS	ENSMUST00000178254.2	novel	0.50	3	3	3	3	y	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.00	0	8	0	8	n	0.00	0	16	0	16	n	-	-	-	-	-	-	0.00	0	11	0	11	n	0.00	0	9	0	9	n	1.00	3	0	3	0	y	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	ENSMUSG00000018293.5	Pfn1	chr11	protein_coding	profilin 1
novel_NIR_3427	chr11	70545285	70548698	+	70548093	70548698	5pMXE	ENSMUST00000072841.12	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	36	0	36	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000060600.16	Eno3	chr11	protein_coding	enolase 3, beta muscle
novel_NIR_3428	chr11	70545285	70548698	+	70548105	70548698	5pMXE	ENSMUST00000157027.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000060600.16	Eno3	chr11	protein_coding	enolase 3, beta muscle
novel_NIR_3429	chr11	70545722	70545865	-	70545722	70547119	A5SS	ENSMUST00000131642.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	n	-	-	-	-	-	-	ENSMUSG00000087523.2	Gm12319	chr11	lncRNA	predicted gene 12319
novel_NIR_3430	chr11	70545722;70546085	70545865;70547119	-	70545722	70547119	cassetteExon	ENSMUST00000131642.2	novel	-	-	-	-	-	-	0.00	0.0	1	0;0	1	n	1.00	0.5	0	1;0	0	n	-	-	-	-	-	-	1.00	1.5	0	1;2	0	n	-	-	-	-	-	-	1.00	1.5	0	3;0	0	n	1.00	1.0	0	2;0	0	n	1.00	0.5	0	1;0	0	n	-	-	-	-	-	-	1.00	2.5	0	3;2	0	y	-	-	-	-	-	-	ENSMUSG00000087523.2	Gm12319	chr11	lncRNA	predicted gene 12319
novel_NIR_3431	chr11	70546370	70548698	+	70548093	70548698	5pMXE	ENSMUST00000072841.12	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	36	0	36	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000060600.16	Eno3	chr11	protein_coding	enolase 3, beta muscle
novel_NIR_3432	chr11	70546370	70548698	+	70548105	70548698	5pMXE	ENSMUST00000157027.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000060600.16	Eno3	chr11	protein_coding	enolase 3, beta muscle
novel_NIR_3433	chr11	70547606	70548698	+	70548093	70548698	5pMXE	ENSMUST00000072841.12	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	4	0	4	0	y	0.03	1	36	1	36	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	ENSMUSG00000060600.16	Eno3	chr11	protein_coding	enolase 3, beta muscle
novel_NIR_3434	chr11	70547606	70548698	+	70548105	70548698	5pMXE	ENSMUST00000157027.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	4	0	4	0	y	0.25	1	3	1	3	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	ENSMUSG00000060600.16	Eno3	chr11	protein_coding	enolase 3, beta muscle
novel_NIR_3435	chr11	70577267	70578057	-	70577267	70578712	A5SS	ENSMUST00000108545.9	novel	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.50	10	10	10	10	y	0.00	0	6	0	6	n	0.23	3	10	3	10	y	0.58	7	5	7	5	y	0.38	3	5	3	5	y	0.20	2	8	2	8	y	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	ENSMUSG00000040712.17	Camta2	chr11	protein_coding	calmodulin binding transcription activator 2
novel_NIR_3436	chr11	70577267	70579811	-	70577267	70578712	5pMXE	ENSMUST00000108545.9	novel	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.29	2	5	2	5	y	0.20	2	8	2	8	y	0.08	1	12	1	12	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	ENSMUSG00000040712.17	Camta2	chr11	protein_coding	calmodulin binding transcription activator 2
novel_NIR_3437	chr11	70581378	70581645	-	70581378	70584975	A5SS	ENSMUST00000108543.4	novel	0.50	1	1	1	1	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.33	1	2	1	2	n	0.50	2	2	2	2	y	0.50	1	1	1	1	n	ENSMUSG00000057054.12	Inca1	chr11	protein_coding	inhibitor of CDK, cyclin A1 interacting protein 1
novel_NIR_3438	chr11	70581378	70590884	-	70581378	70584975	A5SS&ES	ENSMUST00000108543.4	novel	0.50	1	1	1	1	n	0.25	1	3	1	3	n	0.60	3	2	3	2	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.36	4	7	4	7	y	0.33	1	2	1	2	n	1.00	5	0	5	0	y	0.67	4	2	4	2	y	0.00	0	2	0	2	n	0.75	3	1	3	1	y	ENSMUSG00000057054.12	Inca1	chr11	protein_coding	inhibitor of CDK, cyclin A1 interacting protein 1
novel_NIR_3439	chr11	70586774	70589806	-	70586774	70590746	A5SS	ENSMUST00000073625.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000057054.12	Inca1	chr11	protein_coding	inhibitor of CDK, cyclin A1 interacting protein 1
novel_NIR_3440	chr11	70586774	70589806	-	70586774	70590775	A5SS	ENSMUST00000126114.9	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	2	2	2	2	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	3	0	3	n	ENSMUSG00000057054.12	Inca1	chr11	protein_coding	inhibitor of CDK, cyclin A1 interacting protein 1
novel_NIR_3441	chr11	70586774	70590681	-	70586774	70590746	A5SS	ENSMUST00000073625.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.50	2	2	2	2	y	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000057054.12	Inca1	chr11	protein_coding	inhibitor of CDK, cyclin A1 interacting protein 1
novel_NIR_3442	chr11	70586774	70590681	-	70586774	70590775	A5SS	ENSMUST00000126114.9	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	3	0	3	n	ENSMUSG00000057054.12	Inca1	chr11	protein_coding	inhibitor of CDK, cyclin A1 interacting protein 1
novel_NIR_3443	chr11	70586774	70590785	-	70586774	70590746	A5SS	ENSMUST00000073625.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.33	1	2	1	2	n	0.33	2	4	2	4	y	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	1.00	1	0	1	0	n	0.50	2	2	2	2	y	ENSMUSG00000057054.12	Inca1	chr11	protein_coding	inhibitor of CDK, cyclin A1 interacting protein 1
novel_NIR_3444	chr11	70586774	70590785	-	70586774	70590775	A5SS	ENSMUST00000126114.9	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.17	1	5	1	5	n	0.40	2	3	2	3	y	ENSMUSG00000057054.12	Inca1	chr11	protein_coding	inhibitor of CDK, cyclin A1 interacting protein 1
novel_NIR_3445	chr11	70586774	70590785	-	70586774	70590814	A5SS	ENSMUST00000108541.9	novel	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.04	1	26	1	26	n	0.06	1	15	1	15	n	0.06	2	30	2	30	n	0.07	1	13	1	13	n	0.00	0	23	0	23	n	0.00	0	11	0	11	n	0.00	0	23	0	23	n	0.00	0	27	0	27	n	0.05	1	21	1	21	n	0.15	2	11	2	11	y	ENSMUSG00000057054.12	Inca1	chr11	protein_coding	inhibitor of CDK, cyclin A1 interacting protein 1
novel_NIR_3446	chr11	70586774	70590785	-	70586774	70590884	A5SS	ENSMUST00000108542.8	novel	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.04	1	24	1	24	n	0.05	1	18	1	18	n	0.06	2	30	2	30	n	0.05	1	19	1	19	n	0.00	0	22	0	22	n	0.00	0	31	0	31	n	0.00	0	24	0	24	n	0.00	0	23	0	23	n	0.08	1	12	1	12	n	0.20	2	8	2	8	y	ENSMUSG00000057054.12	Inca1	chr11	protein_coding	inhibitor of CDK, cyclin A1 interacting protein 1
novel_NIR_3447	chr11	70586869	70590775	-	70586774	70590775	A3SS	ENSMUST00000126114.9	novel	0.60	3	2	3	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	3	0	3	n	ENSMUSG00000057054.12	Inca1	chr11	protein_coding	inhibitor of CDK, cyclin A1 interacting protein 1
novel_NIR_3448	chr11	70586869	70590775	-	70586869	70590814	A5SS	ENSMUST00000108543.4	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000057054.12	Inca1	chr11	protein_coding	inhibitor of CDK, cyclin A1 interacting protein 1
novel_NIR_3449	chr11	70586869	70590884	-	70586774	70590884	A3SS	ENSMUST00000108542.8	novel	0.14	2	12	2	12	n	0.14	2	12	2	12	n	0.04	1	24	1	24	n	0.00	0	18	0	18	n	0.00	0	30	0	30	n	0.00	0	19	0	19	n	0.00	0	22	0	22	n	0.06	2	31	2	31	n	0.00	0	24	0	24	n	0.04	1	23	1	23	n	0.25	4	12	4	12	y	0.11	1	8	1	8	n	ENSMUSG00000057054.12	Inca1	chr11	protein_coding	inhibitor of CDK, cyclin A1 interacting protein 1
novel_NIR_3450	chr11	70586869	70590884	-	70586869	70590814	A5SS	ENSMUST00000108543.4	novel	1.00	2	0	2	0	y	1.00	2	0	2	0	y	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.33	1	2	1	2	n	0.67	4	2	4	2	y	1.00	1	0	1	0	n	ENSMUSG00000057054.12	Inca1	chr11	protein_coding	inhibitor of CDK, cyclin A1 interacting protein 1
novel_NIR_3451	chr11	70735834	70765583	+	70735834	70737265	A3SS&ES	ENSMUST00000177731.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020817.17	Rabep1	chr11	protein_coding	rabaptin, RAB GTPase binding effector protein 1
novel_NIR_3452	chr11	70735834	70765583	+	70735834	70775591	A3SS	ENSMUST00000178245.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.75	3	1	3	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000020817.17	Rabep1	chr11	protein_coding	rabaptin, RAB GTPase binding effector protein 1
novel_NIR_3453	chr11	70886899	70889973	-	70886899	70890196	A5SS	ENSMUST00000108527.8	novel	0.00	0	18	0	18	n	0.00	0	7	0	7	n	0.00	0	35	0	35	n	0.00	0	21	0	21	n	0.00	0	23	0	23	n	0.00	0	16	0	16	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	18	0	18	n	0.00	0	16	0	16	n	0.22	2	7	2	7	y	0.00	0	24	0	24	n	ENSMUSG00000040620.16	Dhx33	chr11	protein_coding	DEAH (Asp-Glu-Ala-His) box polypeptide 33
novel_NIR_3454	chr11	70886899	70889973	-	70886899	70894943	A5SS	ENSMUST00000124464.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000040620.16	Dhx33	chr11	protein_coding	DEAH (Asp-Glu-Ala-His) box polypeptide 33
novel_NIR_3455	chr11	70909203	70909883	-	70909203	70909766	A5SS	ENSMUST00000131340.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.50	1	1	1	1	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000018442.14	Derl2	chr11	protein_coding	Der1-like domain family, member 2
novel_NIR_3456	chr11	70909203	70909883	-	70909203	70909935	A5SS	ENSMUST00000132198.8	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.50	1	1	1	1	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000018442.14	Derl2	chr11	protein_coding	Der1-like domain family, member 2
novel_NIR_3457	chr11	70909203	70909883	-	70909203	70910217	A5SS	ENSMUST00000171041.8	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	1.00	1	0	1	0	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000018442.14	Derl2	chr11	protein_coding	Der1-like domain family, member 2
novel_NIR_3458	chr11	71063955	71091974	-	71063955	71107683	A5SS	ENSMUST00000136493.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000070390.13	Nlrp1b	chr11	protein_coding	NLR family, pyrin domain containing 1B
novel_NIR_3459	chr11	71063955	71091974	-	71063955;71073690	71072016;71091974	ES	ENSMUST00000108515.9	novel	0.00	0	0.5	0	0;1	n	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	0.5	0	0;1	n	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	0.00	0	0.5	0	0;1	n	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	0.00	0	0.5	0	0;1	n	ENSMUSG00000070390.13	Nlrp1b	chr11	protein_coding	NLR family, pyrin domain containing 1B
novel_NIR_3460	chr11	71089983	71091974	-	71073690	71091974	A3SS	ENSMUST00000108515.9	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000070390.13	Nlrp1b	chr11	protein_coding	NLR family, pyrin domain containing 1B
novel_NIR_3461	chr11	71139055	71142911	-	71139055	71142948	A5SS	ENSMUST00000174668.10	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000092528.10	Nlrp1c-ps	chr11	transcribed_unprocessed_pseudogene	NLR family, pyrin domain containing 1C, pseudogene
novel_NIR_3462	chr11	72050346	72053569	-	72050346	72056343	A5SS	ENSMUST00000142530.8	novel	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.29	2	5	2	5	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.43	3	4	3	4	y	ENSMUSG00000020807.16	4933427D14Rik	chr11	protein_coding	RIKEN cDNA 4933427D14 gene
novel_NIR_3463	chr11	72050346	72053569	-	72050346	72057464	A5SS	ENSMUST00000156696.2	novel	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000020807.16	4933427D14Rik	chr11	protein_coding	RIKEN cDNA 4933427D14 gene
novel_NIR_3464	chr11	72152925	72157290	-	72152866	72157290	A3SS	ENSMUST00000140167.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020805.15	Slc13a5	chr11	protein_coding	solute carrier family 13 (sodium-dependent citrate transporter), member 5
novel_NIR_3465	chr11	72194288	72202782	+	72194288	72199433	3pMXE	ENSMUST00000151440.8	novel	0.09	1	10	1	10	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.10	1	9	1	9	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.12	1	7	1	7	n	0.33	2	4	2	4	y	ENSMUSG00000040483.16	Xaf1	chr11	protein_coding	XIAP associated factor 1
novel_NIR_3466	chr11	72327467	72327569	+	72327467	72327965	A3SS	ENSMUST00000100903.3	novel	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	1.00	4	0	4	0	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	ENSMUSG00000040471.18	Ggt6	chr11	protein_coding	gamma-glutamyltransferase 6
novel_NIR_3467	chr11	72344426	72347129	-	72344426;72345043	72344880;72347129	ES	ENSMUST00000144940.2	novel	0.21	4	15.5	4	30;1	y	0.00	0	19.5	0	39;0	n	0.00	0	10.0	0	20;0	n	0.06	1	14.5	1	29;0	n	0.00	0	20.5	0	41;0	n	0.00	0	9.5	0	19;0	n	0.05	1	17.5	1	35;0	n	0.00	0	16.0	0	32;0	n	0.00	0	19.0	0	38;0	n	0.00	0	23.5	0	46;1	n	0.10	2	19.0	2	37;1	n	0.10	1	9.5	1	19;0	n	ENSMUSG00000040447.16	Spns2	chr11	protein_coding	spinster homolog 2
novel_NIR_3468	chr11	72390562	72420360	-	72390562	72393078	5pMXE	ENSMUST00000155774.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020798.15	Spns3	chr11	protein_coding	spinster homolog 3
novel_NIR_3469	chr11	72390562	72420360	-	72390562;72395947	72395882;72420360	ES	ENSMUST00000092940.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2.0	0	2;2	n	-	-	-	-	-	-	0.50	4	4.0	4	3;5	y	0.00	0	1.5	0	3;0	n	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	0.00	0	0.5	0	0;1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3.0	0	2;4	n	ENSMUSG00000020798.15	Spns3	chr11	protein_coding	spinster homolog 3
novel_NIR_3470	chr11	72498822	72536363	+	72498461	72536363	A5SS	ENSMUST00000138247.8	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.27	3	8	3	8	y	-	-	-	-	-	-	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	7	0	7	n	ENSMUSG00000020794.14	Ube2g1	chr11	protein_coding	ubiquitin-conjugating enzyme E2G 1
novel_NIR_3471	chr11	72509430	72536363	+	72498461	72536363	A5SS	ENSMUST00000138247.8	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.22	2	7	2	7	y	0.00	0	1	0	1	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	7	0	7	n	ENSMUSG00000020794.14	Ube2g1	chr11	protein_coding	ubiquitin-conjugating enzyme E2G 1
novel_NIR_3472	chr11	72515562	72536363	+	72498461	72536363	A5SS	ENSMUST00000138247.8	novel	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.60	6	4	6	4	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	4	0	4	0	y	-	-	-	-	-	-	0.30	3	7	3	7	y	ENSMUSG00000020794.14	Ube2g1	chr11	protein_coding	ubiquitin-conjugating enzyme E2G 1
novel_NIR_3473	chr11	72515562	72553897	+	72536478	72553897	A5SS&ES	ENSMUST00000138247.8	novel	0.08	1	11	1	11	n	0.00	0	4	0	4	n	0.00	0	19	0	19	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.00	0	21	0	21	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.23	3	10	3	10	y	0.00	0	10	0	10	n	ENSMUSG00000020794.14	Ube2g1	chr11	protein_coding	ubiquitin-conjugating enzyme E2G 1
novel_NIR_3474	chr11	72531721	72553897	+	72536478	72553897	A5SS&ES	ENSMUST00000138247.8	novel	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	19	0	19	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.00	0	21	0	21	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.27	4	11	4	11	y	0.00	0	10	0	10	n	0.00	0	10	0	10	n	ENSMUSG00000020794.14	Ube2g1	chr11	protein_coding	ubiquitin-conjugating enzyme E2G 1
novel_NIR_3475	chr11	72605309	72619587	+	72605309	72613454	3pMXE	ENSMUST00000150172.8	novel	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.12	2	14	2	14	n	0.11	1	8	1	8	n	0.00	0	9	0	9	n	0.06	1	16	1	16	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.15	2	11	2	11	y	0.00	0	2	0	2	n	0.00	0	9	0	9	n	ENSMUSG00000020790.15	Ankfy1	chr11	protein_coding	ankyrin repeat and FYVE domain containing 1
novel_NIR_3476	chr11	72673656	72679903	-	72669778	72679903	A3SS	ENSMUST00000141141.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000057778.15	Cyb5d2	chr11	protein_coding	cytochrome b5 domain containing 2
novel_NIR_3477	chr11	72680043	72686605	-	72680043	72686339	A5SS	ENSMUST00000079681.6	novel	0.05	1	18	1	18	n	0.20	2	8	2	8	y	0.13	2	13	2	13	n	0.11	2	17	2	17	n	0.05	2	38	2	38	n	0.10	1	9	1	9	n	0.14	6	37	6	37	n	0.00	0	22	0	22	n	0.00	0	9	0	9	n	0.00	0	27	0	27	n	0.20	2	8	2	8	y	0.11	2	17	2	17	n	ENSMUSG00000057778.15	Cyb5d2	chr11	protein_coding	cytochrome b5 domain containing 2
novel_NIR_3478	chr11	72680043	72686605	-	72680043	72686843	A5SS	ENSMUST00000156294.8	novel	0.09	1	10	1	10	n	0.50	2	2	2	2	y	0.15	2	11	2	11	y	0.22	2	7	2	7	y	0.12	2	15	2	15	n	0.17	1	5	1	5	n	0.50	6	6	6	6	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.33	2	4	2	4	y	0.25	2	6	2	6	y	ENSMUSG00000057778.15	Cyb5d2	chr11	protein_coding	cytochrome b5 domain containing 2
novel_NIR_3479	chr11	72760626	72763430	+	72760753	72763430	A5SS	ENSMUST00000069395.7	novel	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	21	0	21	n	0.00	0	19	0	19	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.18	2	9	2	9	y	0.00	0	15	0	15	n	ENSMUSG00000055670.15	Zzef1	chr11	protein_coding	zinc finger, ZZ-type with EF hand domain 1
novel_NIR_3480	chr11	72910338	72916363	+	72909953	72916363	A5SS	ENSMUST00000155720.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020785.18	Camkk1	chr11	protein_coding	calcium/calmodulin-dependent protein kinase kinase 1, alpha
novel_NIR_3481	chr11	73029688	73036367	+	73029688;73031588	73031493;73036367	ES	ENSMUST00000006101.4	novel	0.00	0	3.5	0	4;3	n	0.00	0	3.0	0	0;6	n	0.00	0	1.0	0	0;2	n	0.00	0	1.0	0	1;1	n	0.00	0	1.0	0	1;1	n	-	-	-	-	-	-	0.00	0	3.0	0	4;2	n	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	0.00	0	0.5	0	1;0	n	0.00	0	0.5	0	1;0	n	0.00	0	2.0	0	1;3	n	ENSMUSG00000005947.12	Itgae	chr11	protein_coding	integrin alpha E, epithelial-associated
novel_NIR_3482	chr11	73083957	73087464	-	73086111	73087464	A3SS&ES	ENSMUST00000150468.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000005949.10	Ctns	chr11	protein_coding	cystinosis, nephropathic
novel_NIR_3483	chr11	73083959	73085982	-	73083959	73085953	A5SS	ENSMUST00000150468.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000005949.10	Ctns	chr11	protein_coding	cystinosis, nephropathic
novel_NIR_3484	chr11	73088052	73089744	-	73088078	73089744	A3SS	ENSMUST00000108476.8	novel	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.38	3	5	3	5	y	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	ENSMUSG00000005949.10	Ctns	chr11	protein_coding	cystinosis, nephropathic
novel_NIR_3485	chr11	73088078	73089471	-	73088078	73089744	A5SS	ENSMUST00000108476.8	novel	0.00	0	6	0	6	n	0.25	1	3	1	3	n	0.00	0	8	0	8	n	0.22	2	7	2	7	y	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	ENSMUSG00000005949.10	Ctns	chr11	protein_coding	cystinosis, nephropathic
novel_NIR_3486	chr11	73088078	73090699	-	73088078	73089744	5pMXE	ENSMUST00000108476.8	novel	0.14	1	6	1	6	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.25	2	6	2	6	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.20	1	4	1	4	n	0.20	1	4	1	4	n	0.27	3	8	3	8	y	ENSMUSG00000005949.10	Ctns	chr11	protein_coding	cystinosis, nephropathic
novel_NIR_3487	chr11	73097318	73104157	+	73097318	73104277	A3SS	ENSMUST00000131927.9	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000005951.14	Shpk	chr11	protein_coding	sedoheptulokinase
novel_NIR_3488	chr11	73196452	73199535	-	73196459	73199535	A3SS	ENSMUST00000021119.9	novel	0.00	0	25	0	25	n	0.00	0	21	0	21	n	0.09	1	10	1	10	n	0.00	0	38	0	38	n	0.00	0	21	0	21	n	0.38	3	5	3	5	y	0.00	0	41	0	41	n	0.00	0	10	0	10	n	0.00	0	23	0	23	n	0.00	0	36	0	36	n	0.00	0	45	0	45	n	0.00	0	31	0	31	n	ENSMUSG00000020774.10	Aspa	chr11	protein_coding	aspartoacylase
novel_NIR_3489	chr11	73215343	73215452	-	73215343	73217189	A5SS	ENSMUST00000155630.9	novel	0.29	2	5	2	5	y	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.17	2	10	2	10	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.25	1	3	1	3	n	0.00	0	7	0	7	n	0.14	1	6	1	6	n	0.00	0	19	0	19	n	0.00	0	15	0	15	n	ENSMUSG00000020774.10	Aspa	chr11	protein_coding	aspartoacylase
novel_NIR_3490	chr11	73215343	73215452	-	73215343	73217609	A5SS	ENSMUST00000134079.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000020774.10	Aspa	chr11	protein_coding	aspartoacylase
novel_NIR_3491	chr11	73215343	73215452	-	73215343	73220090	A5SS	ENSMUST00000184572.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020774.10	Aspa	chr11	protein_coding	aspartoacylase
novel_NIR_3492	chr11	73217504	73221914	+	73220601	73221914	5pMXE	ENSMUST00000092926.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000112920.2	Spata22	chr11	protein_coding	spermatogenesis associated 22
novel_NIR_3493	chr11	73217558	73221914	+	73220601	73221914	5pMXE	ENSMUST00000092926.11	novel	1.00	6	0	6	0	y	1.00	2	0	2	0	y	1.00	9	0	9	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.86	6	1	6	1	y	1.00	16	0	16	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	11	0	11	0	y	1.00	5	0	5	0	y	1.00	7	0	7	0	y	ENSMUSG00000112920.2	Spata22	chr11	protein_coding	spermatogenesis associated 22
novel_NIR_3494	chr11	73218662	73221914	+	73220601	73221914	5pMXE	ENSMUST00000092926.11	novel	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	8	0	8	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000112920.2	Spata22	chr11	protein_coding	spermatogenesis associated 22
novel_NIR_3495	chr11	73224252	73227021	+	73224252;73226896	73226836;73227021	ES	ENSMUST00000092926.11	novel	0.44	4	5.0	4	4;6	y	0.14	1	6.0	1	3;9	n	0.32	6	13.0	6	14;12	y	0.08	1	11.0	1	8;14	n	0.29	8	20.0	8	17;23	y	0.00	0	8.5	0	11;6	n	0.00	0	10.0	0	10;10	n	0.11	1	8.5	1	5;12	n	0.00	0	9.5	0	8;11	n	0.41	8	11.5	8	12;11	y	0.21	2	7.5	2	5;10	y	0.43	5	6.5	5	5;8	y	ENSMUSG00000112920.2	Spata22	chr11	protein_coding	spermatogenesis associated 22
novel_NIR_3496	chr11	73231410	73234567	+	73231410	73234563	A3SS	ENSMUST00000092926.11	novel	0.00	0	3	0	3	n	0.20	2	8	2	8	y	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	25	0	25	n	0.00	0	6	0	6	n	0.00	0	23	0	23	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.00	0	18	0	18	n	0.00	0	18	0	18	n	0.00	0	13	0	13	n	ENSMUSG00000112920.2	Spata22	chr11	protein_coding	spermatogenesis associated 22
novel_NIR_3497	chr11	74541499	74547249	+	74540944	74547249	A5SS	ENSMUST00000127679.2	novel	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.22	2	7	2	7	y	0.23	3	10	3	10	y	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.57	4	3	4	3	y	0.12	1	7	1	7	n	0.00	0	5	0	5	n	ENSMUSG00000020741.18	Cluh	chr11	protein_coding	clustered mitochondria (cluA/CLU1) homolog
novel_NIR_3498	chr11	74541499	74547249	+	74541004	74547249	A5SS	ENSMUST00000130398.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.40	2	3	2	3	y	1.00	3	0	3	0	y	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	4	0	4	0	y	0.25	1	3	1	3	n	0.00	0	1	0	1	n	ENSMUSG00000020741.18	Cluh	chr11	protein_coding	clustered mitochondria (cluA/CLU1) homolog
novel_NIR_3499	chr11	74541742	74547249	+	74540944	74547249	A5SS	ENSMUST00000127679.2	novel	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.17	2	10	2	10	y	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	ENSMUSG00000020741.18	Cluh	chr11	protein_coding	clustered mitochondria (cluA/CLU1) homolog
novel_NIR_3500	chr11	74541742	74547249	+	74541004	74547249	A5SS	ENSMUST00000130398.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000020741.18	Cluh	chr11	protein_coding	clustered mitochondria (cluA/CLU1) homolog
novel_NIR_3501	chr11	74544627	74547249	+	74540944	74547249	A5SS	ENSMUST00000127679.2	novel	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.17	2	10	2	10	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.29	2	5	2	5	y	ENSMUSG00000020741.18	Cluh	chr11	protein_coding	clustered mitochondria (cluA/CLU1) homolog
novel_NIR_3502	chr11	74544627	74547249	+	74541004	74547249	A5SS	ENSMUST00000130398.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.67	2	1	2	1	y	ENSMUSG00000020741.18	Cluh	chr11	protein_coding	clustered mitochondria (cluA/CLU1) homolog
novel_NIR_3503	chr11	74554432	74554613	+	74554432	74554610	A3SS	ENSMUST00000117818.2	novel	0.21	34	131	34	131	y	0.16	17	90	17	90	y	0.12	17	130	17	130	n	0.19	39	163	39	163	y	0.14	50	319	50	319	n	0.23	24	81	24	81	y	0.18	40	187	40	187	y	0.17	31	150	31	150	y	0.19	28	120	28	120	y	0.19	49	215	49	215	y	0.14	26	158	26	158	n	0.14	40	241	40	241	n	ENSMUSG00000020741.18	Cluh	chr11	protein_coding	clustered mitochondria (cluA/CLU1) homolog
novel_NIR_3504	chr11	74590346	74599319	-	74590346	74613942	A5SS	ENSMUST00000155493.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020745.16	Pafah1b1	chr11	protein_coding	platelet-activating factor acetylhydrolase, isoform 1b, subunit 1
novel_NIR_3505	chr11	74590346	74599319	-	74590346	74614026	A5SS	ENSMUST00000102520.9	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.22	2	7	2	7	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000020745.16	Pafah1b1	chr11	protein_coding	platelet-activating factor acetylhydrolase, isoform 1b, subunit 1
novel_NIR_3506	chr11	74590346	74602965	-	74590346	74613942	A5SS	ENSMUST00000155493.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020745.16	Pafah1b1	chr11	protein_coding	platelet-activating factor acetylhydrolase, isoform 1b, subunit 1
novel_NIR_3507	chr11	74590346	74602965	-	74590346	74614026	A5SS	ENSMUST00000102520.9	novel	0.25	1	3	1	3	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.08	1	11	1	11	n	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.18	2	9	2	9	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000020745.16	Pafah1b1	chr11	protein_coding	platelet-activating factor acetylhydrolase, isoform 1b, subunit 1
novel_NIR_3508	chr11	74599410	74614026	-	74590346	74614026	A3SS	ENSMUST00000102520.9	novel	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.33	2	4	2	4	y	0.00	0	7	0	7	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000020745.16	Pafah1b1	chr11	protein_coding	platelet-activating factor acetylhydrolase, isoform 1b, subunit 1
novel_NIR_3509	chr11	74722227	74727191	+	74722227	74727189	A3SS	ENSMUST00000000291.9	novel	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.25	2	6	2	6	y	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	ENSMUSG00000000282.13	Mnt	chr11	protein_coding	max binding protein
novel_NIR_3510	chr11	74742133	74742566	-	74742092	74742566	A3SS	ENSMUST00000057631.12	novel	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.06	1	15	1	15	n	0.00	0	3	0	3	n	0.05	1	18	1	18	n	0.00	0	7	0	7	n	0.40	2	3	2	3	y	0.00	0	18	0	18	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	ENSMUSG00000038351.15	Sgsm2	chr11	protein_coding	small G protein signaling modulator 2
novel_NIR_3511	chr11	74745293	74748444	-	74745335	74748444	A3SS	ENSMUST00000057631.12	novel	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.20	2	8	2	8	y	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	24	0	24	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	ENSMUSG00000038351.15	Sgsm2	chr11	protein_coding	small G protein signaling modulator 2
novel_NIR_3512	chr11	74801146	74810263	-	74801146	74816410	A5SS	ENSMUST00000127499.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	ENSMUSG00000001323.18	Srr	chr11	protein_coding	serine racemase
novel_NIR_3513	chr11	74810346	74816410	-	74801146	74816410	A3SS	ENSMUST00000127499.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000001323.18	Srr	chr11	protein_coding	serine racemase
novel_NIR_3514	chr11	74810346	74816410	-	74803958	74816410	A3SS	ENSMUST00000123855.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000001323.18	Srr	chr11	protein_coding	serine racemase
novel_NIR_3515	chr11	74810346	74816410	-	74810488	74816410	A3SS	ENSMUST00000128556.8	novel	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.31	4	9	4	9	y	0.00	0	11	0	11	n	0.00	0	19	0	19	n	ENSMUSG00000001323.18	Srr	chr11	protein_coding	serine racemase
novel_NIR_3516	chr11	74819591	74819819	+	74816829	74819819	A5SS	ENSMUST00000045281.13	novel	0.22	2	7	2	7	y	1.00	3	0	3	0	y	0.35	9	17	9	17	y	0.23	3	10	3	10	y	0.33	8	16	8	16	y	0.75	6	2	6	2	y	0.45	5	6	5	6	y	0.23	3	10	3	10	y	0.44	4	5	4	5	y	0.47	9	10	9	10	n	0.00	0	5	0	5	n	0.45	9	11	9	11	y	ENSMUSG00000038290.16	Smg6	chr11	protein_coding	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)
novel_NIR_3517	chr11	74878636	74880896	+	74837045	74880896	A5SS	ENSMUST00000130145.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.50	1	1	1	1	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000038290.16	Smg6	chr11	protein_coding	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)
novel_NIR_3518	chr11	74878636	74880896	+	74880249	74880896	5pMXE	ENSMUST00000135522.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000038290.16	Smg6	chr11	protein_coding	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)
novel_NIR_3519	chr11	75068848	75069751	-	75069213	75069751	A3SS	ENSMUST00000044949.11	novel	0.06	2	34	2	34	n	0.05	2	39	2	39	n	0.29	8	20	8	20	y	0.08	3	36	3	36	n	0.00	0	57	0	57	n	0.00	0	17	0	17	n	0.06	3	44	3	44	n	0.00	0	9	0	9	n	0.00	0	28	0	28	n	0.00	0	38	0	38	n	0.00	0	29	0	29	n	0.09	4	39	4	39	n	ENSMUSG00000078789.10	Dph1	chr11	protein_coding	diphthamide biosynthesis 1
novel_NIR_3520	chr11	75076941	75081170	-	75076941	75081225	A5SS	ENSMUST00000044949.11	novel	0.05	2	38	2	38	n	0.21	4	15	4	15	y	0.00	0	28	0	28	n	0.00	0	35	0	35	n	0.00	0	43	0	43	n	0.04	1	24	1	24	n	0.04	2	43	2	43	n	0.00	0	27	0	27	n	0.00	0	39	0	39	n	0.00	0	38	0	38	n	0.00	0	25	0	25	n	0.10	3	27	3	27	n	ENSMUSG00000078789.10	Dph1	chr11	protein_coding	diphthamide biosynthesis 1
novel_NIR_3521	chr11	75076941	75081170	-	75076941	75081999	A5SS	ENSMUST00000139958.2	novel	1.00	2	0	2	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000078789.10	Dph1	chr11	protein_coding	diphthamide biosynthesis 1
novel_NIR_3522	chr11	75105023	75155583	+	75085120	75155583	A5SS	ENSMUST00000102514.4	novel	0.00	0	7	0	7	n	0.22	2	7	2	7	y	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.22	6	21	6	21	y	0.00	0	4	0	4	n	0.15	3	17	3	17	y	0.08	1	11	1	11	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	ENSMUSG00000045287.7	Rtn4rl1	chr11	protein_coding	reticulon 4 receptor-like 1
novel_NIR_3523	chr11	75105064	75155583	+	75085120	75155583	A5SS	ENSMUST00000102514.4	novel	0.00	0	7	0	7	n	0.12	1	7	1	7	n	0.12	1	7	1	7	n	0.00	0	7	0	7	n	0.05	1	21	1	21	n	0.43	3	4	3	4	y	0.15	3	17	3	17	y	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	ENSMUSG00000045287.7	Rtn4rl1	chr11	protein_coding	reticulon 4 receptor-like 1
novel_NIR_3524	chr11	75240640	75278237	+	75240640	75273076	3pMXE	ENSMUST00000157055.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.17	1	5	1	5	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	ENSMUSG00000018809.3	Smyd4	chr11	protein_coding	SET and MYND domain containing 4
novel_NIR_3525	chr11	75240640	75278237	+	75240640;75273220	75273076;75278237	ES	ENSMUST00000044530.3	novel	0.00	0	2.0	0	1;3	n	0.00	0	1.5	0	2;1	n	0.00	0	2.0	0	2;2	n	0.40	2	3.0	2	0;6	y	0.15	1	5.5	1	5;6	n	0.50	2	2.0	2	2;2	y	0.00	0	2.0	0	2;2	n	0.00	0	2.5	0	0;5	n	0.00	0	2.0	0	0;4	n	0.80	2	0.5	2	0;1	y	0.50	1	1.0	1	0;2	n	0.00	0	1.0	0	2;0	n	ENSMUSG00000018809.3	Smyd4	chr11	protein_coding	SET and MYND domain containing 4
novel_NIR_3526	chr11	75278315	75280898	+	75278326	75280898	A5SS	ENSMUST00000044530.3	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000018809.3	Smyd4	chr11	protein_coding	SET and MYND domain containing 4
novel_NIR_3527	chr11	75293585	75293935	+	75293076	75293935	A5SS	ENSMUST00000044530.3	novel	0.25	1	3	1	3	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.25	2	6	2	6	y	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.20	1	4	1	4	n	0.25	2	6	2	6	y	ENSMUSG00000018809.3	Smyd4	chr11	protein_coding	SET and MYND domain containing 4
novel_NIR_3528	chr11	75308822	75309047	-	75308822	75309223	A5SS	ENSMUST00000137103.8	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.44	4	5	4	5	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	0.71	5	2	5	2	y	0.33	2	4	2	4	n	0.75	3	1	3	1	n	1.00	2	0	2	0	n	ENSMUSG00000000753.16	Serpinf1	chr11	protein_coding	serine (or cysteine) peptidase inhibitor, clade F, member 1
novel_NIR_3529	chr11	75308822;75309182	75309047;75313322	-	75308822;75309272	75309223;75313322	MXE	ENSMUST00000137103.8	novel	0.17	0.5	2.5	1;0	1;4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.75	1.5	0.5	0;3	0;1	n	0.47	3.5	4.0	4;3	5;3	y	-	-	-	-	-	-	0.33	1.0	2.0	2;0	2;2	n	-	-	-	-	-	-	0.62	2.5	1.5	5;0	2;1	n	0.50	2.0	2.0	2;2	4;0	y	0.57	2.0	1.5	3;1	1;2	n	1.00	1.5	0.0	2;1	0;0	n	ENSMUSG00000000753.16	Serpinf1	chr11	protein_coding	serine (or cysteine) peptidase inhibitor, clade F, member 1
novel_NIR_3530	chr11	75309182	75313322	-	75309272	75313322	A3SS&ES	ENSMUST00000137103.8	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	0.50	3	3	3	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	n	0.33	1	2	1	2	n	1.00	1	0	1	0	n	ENSMUSG00000000753.16	Serpinf1	chr11	protein_coding	serine (or cysteine) peptidase inhibitor, clade F, member 1
novel_NIR_3531	chr11	75329284	75329421	-	75329284	75329699	A5SS	ENSMUST00000108437.8	novel	0.43	19	25	19	25	y	0.13	4	26	4	26	n	0.39	14	22	14	22	y	0.38	12	20	12	20	y	0.26	14	40	14	40	y	0.25	6	18	6	18	y	0.52	26	24	26	24	y	0.16	4	21	4	21	y	0.25	5	15	5	15	y	0.28	10	26	10	26	y	0.54	7	6	7	6	y	0.33	13	26	13	26	y	ENSMUSG00000038224.13	Serpinf2	chr11	protein_coding	serine (or cysteine) peptidase inhibitor, clade F, member 2
novel_NIR_3532	chr11	75329284	75329458	-	75329284	75329699	A5SS	ENSMUST00000108437.8	novel	0.60	38	25	38	25	y	0.49	25	26	25	26	y	0.70	51	22	51	22	y	0.71	49	20	49	20	y	0.64	71	40	71	40	y	0.59	26	18	26	18	y	0.73	66	24	66	24	y	0.66	40	21	40	21	y	0.58	21	15	21	15	y	0.63	44	26	44	26	y	0.85	35	6	35	6	y	0.66	51	26	51	26	y	ENSMUSG00000038224.13	Serpinf2	chr11	protein_coding	serine (or cysteine) peptidase inhibitor, clade F, member 2
novel_NIR_3533	chr11	75329284	75329838	-	75329284	75329699	5pMXE	ENSMUST00000108437.8	novel	0.22	7	25	7	25	y	0.19	6	26	6	26	y	0.19	5	22	5	22	y	0.39	13	20	13	20	y	0.30	17	40	17	40	y	0.05	1	18	1	18	n	0.17	5	24	5	24	y	0.00	0	21	0	21	n	0.06	1	15	1	15	n	0.19	6	26	6	26	y	0.33	3	6	3	6	y	0.16	5	26	5	26	y	ENSMUSG00000038224.13	Serpinf2	chr11	protein_coding	serine (or cysteine) peptidase inhibitor, clade F, member 2
novel_NIR_3534	chr11	75329284	75330881	-	75329284	75329699	5pMXE	ENSMUST00000108437.8	novel	0.07	2	25	2	25	n	0.16	5	26	5	26	y	0.00	0	22	0	22	n	0.17	4	20	4	20	y	0.11	5	40	5	40	n	0.00	0	18	0	18	n	0.11	3	24	3	24	n	0.00	0	21	0	21	n	0.00	0	15	0	15	n	0.26	9	26	9	26	y	0.00	0	6	0	6	n	0.16	5	26	5	26	y	ENSMUSG00000038224.13	Serpinf2	chr11	protein_coding	serine (or cysteine) peptidase inhibitor, clade F, member 2
novel_NIR_3535	chr11	75340362	75340617	-	75340362	75340477	5pMXE	ENSMUST00000135804.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000045374.19	Wdr81	chr11	protein_coding	WD repeat domain 81
novel_NIR_3536	chr11	75359562	75359668	+	75359569	75359668	A5SS	ENSMUST00000153236.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038217.14	Tlcd2	chr11	protein_coding	TLC domain containing 2
novel_NIR_3537	chr11	75359750	75360302	+	75359750	75360299	A3SS	ENSMUST00000153236.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	6	0	6	0	y	-	-	-	-	-	-	ENSMUSG00000038217.14	Tlcd2	chr11	protein_coding	TLC domain containing 2
novel_NIR_3538	chr11	75360444	75360640	+	75360444	75361226	A3SS	ENSMUST00000108435.2	novel	0.45	9	11	9	11	y	0.75	6	2	6	2	y	0.00	0	4	0	4	n	0.44	8	10	8	10	y	0.47	7	8	7	8	y	0.20	1	4	1	4	n	0.50	7	7	7	7	y	0.00	0	1	0	1	n	0.63	17	10	17	10	y	0.38	10	16	10	16	y	0.56	14	11	14	11	y	0.50	4	4	4	4	y	ENSMUSG00000038217.14	Tlcd2	chr11	protein_coding	TLC domain containing 2
novel_NIR_3539	chr11	75527886	75528041	+	75527886	75528044	A3SS	ENSMUST00000136605.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	-	-	-	-	-	-	ENSMUSG00000006127.10	Inpp5k	chr11	protein_coding	inositol polyphosphate 5-phosphatase K
novel_NIR_3540	chr11	75745304	75797344	-	75745304;75769861	75769775;75797344	ES	ENSMUST00000121287.8	novel	0.30	3	7.0	3	6;8	y	0.00	0	0.5	0	1;0	n	0.00	0	5.5	0	8;3	n	0.00	0	3.5	0	5;2	n	0.00	0	5.0	0	6;4	n	0.00	0	1.5	0	0;3	n	0.00	0	5.0	0	3;7	n	0.50	1	1.0	1	0;2	n	0.00	0	2.5	0	5;0	n	0.29	3	7.5	3	7;8	y	0.00	0	5.0	0	5;5	n	0.00	0	7.0	0	5;9	n	ENSMUSG00000020847.16	Rph3al	chr11	protein_coding	rabphilin 3A-like (without C2 domains)
novel_NIR_3541	chr11	75745304	75797344	-	75791719	75797344	3pMXE	ENSMUST00000021208.11	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020847.16	Rph3al	chr11	protein_coding	rabphilin 3A-like (without C2 domains)
novel_NIR_3542	chr11	76065533	76070110	-	76065533	76066444	5pMXE	ENSMUST00000166084.8	novel	1.00	2	0	2	0	y	1.00	7	0	7	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	4	0	4	0	y	1.00	3	0	3	0	y	ENSMUSG00000017288.16	Vps53	chr11	protein_coding	VPS53 GARP complex subunit
novel_NIR_3543	chr11	76065533	76070110	-	76065533	76070239	A5SS	ENSMUST00000056601.11	novel	0.06	2	34	2	34	n	0.26	7	20	7	20	y	0.02	1	61	1	61	n	0.07	3	43	3	43	n	0.08	4	48	4	48	n	0.00	0	20	0	20	n	0.00	0	50	0	50	n	0.00	0	23	0	23	n	0.04	1	25	1	25	n	0.09	4	41	4	41	n	0.14	4	25	4	25	n	0.07	3	41	3	41	n	ENSMUSG00000017288.16	Vps53	chr11	protein_coding	VPS53 GARP complex subunit
novel_NIR_3544	chr11	76068208	76070110	-	76068208	76070239	A5SS	ENSMUST00000129256.2	novel	0.08	1	12	1	12	n	0.07	1	14	1	14	n	0.12	2	15	2	15	n	0.12	1	7	1	7	n	0.00	0	12	0	12	n	0.00	0	18	0	18	n	0.08	1	12	1	12	n	0.12	1	7	1	7	n	0.42	5	7	5	7	y	0.29	5	12	5	12	y	0.08	1	12	1	12	n	0.00	0	5	0	5	n	ENSMUSG00000017288.16	Vps53	chr11	protein_coding	VPS53 GARP complex subunit
novel_NIR_3545	chr11	76070812	76072282	+	76070812	76093378	A3SS	ENSMUST00000129853.8	novel	0.00	0	1	0	1	n	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	6	0	6	n	0.11	1	8	1	8	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.50	1	1	1	1	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.33	1	2	1	2	n	-	-	-	-	-	-	ENSMUSG00000069808.14	Tlcd3a	chr11	protein_coding	TLC domain containing 3A
novel_NIR_3546	chr11	76135291	76138173	+	76135349	76138173	A5SS	ENSMUST00000040577.5	novel	0.00	0	23	0	23	n	0.16	6	31	6	31	y	0.00	0	23	0	23	n	0.07	2	28	2	28	n	0.00	0	18	0	18	n	0.15	2	11	2	11	y	0.11	4	33	4	33	n	0.20	2	8	2	8	y	0.00	0	20	0	20	n	0.00	0	25	0	25	n	0.05	1	21	1	21	n	0.03	1	32	1	32	n	ENSMUSG00000038046.5	Mrm3	chr11	protein_coding	mitochondrial rRNA methyltransferase 3
novel_NIR_3547	chr11	76645626	76652067	-	76645626	76652061	A5SS	ENSMUST00000010536.9	novel	0.10	4	36	4	36	n	0.04	1	22	1	22	n	0.13	9	61	9	61	n	0.04	2	48	2	48	n	0.05	3	56	3	56	n	0.18	7	31	7	31	y	0.00	0	53	0	53	n	0.08	4	45	4	45	n	0.00	0	40	0	40	n	0.06	3	49	3	49	n	0.10	3	28	3	28	n	0.02	1	53	1	53	n	ENSMUSG00000010392.9	Gosr1	chr11	protein_coding	golgi SNAP receptor complex member 1
novel_NIR_3548	chr11	76645626	76652067	-	76645626	76654346	A5SS	ENSMUST00000137767.2	novel	1.00	4	0	4	0	y	1.00	1	0	1	0	n	0.90	9	1	9	1	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	ENSMUSG00000010392.9	Gosr1	chr11	protein_coding	golgi SNAP receptor complex member 1
novel_NIR_3549	chr11	76913125	76914001	+	76912316	76914001	A5SS	ENSMUST00000108402.9	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000020838.13	Slc6a4	chr11	protein_coding	solute carrier family 6 (neurotransmitter transporter, serotonin), member 4
novel_NIR_3550	chr11	77004542	77006893	-	77004586	77006893	A3SS	ENSMUST00000108400.8	novel	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000050944.15	Efcab5	chr11	protein_coding	EF-hand calcium binding domain 5
novel_NIR_3551	chr11	77353580	77354737	+	77353580	77354482	A3SS&ES	ENSMUST00000130255.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.89	24	3	24	3	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020836.16	Coro6	chr11	protein_coding	coronin 6
novel_NIR_3552	chr11	77353580	77354737	+	77353580	77354678	A3SS	ENSMUST00000102493.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.60	24	16	24	16	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020836.16	Coro6	chr11	protein_coding	coronin 6
novel_NIR_3553	chr11	77357425	77357592	+	77357425	77358050	A3SS	ENSMUST00000021190.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	10	0	10	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020836.16	Coro6	chr11	protein_coding	coronin 6
novel_NIR_3554	chr11	77357425	77357592	+	77357425	77358576	A3SS	ENSMUST00000102493.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.21	10	38	10	38	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020836.16	Coro6	chr11	protein_coding	coronin 6
novel_NIR_3555	chr11	77357425	77357592	+	77357425	77359092	A3SS	ENSMUST00000052515.12	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.91	10	1	10	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020836.16	Coro6	chr11	protein_coding	coronin 6
novel_NIR_3556	chr11	77362704	77363128	-	77362649	77363128	A3SS	ENSMUST00000037593.14	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000037907.17	Ankrd13b	chr11	protein_coding	ankyrin repeat domain 13b
novel_NIR_3557	chr11	77362704	77363128	-	77362704;77363005	77362840;77363128	ES	ENSMUST00000092892.10	novel	-	-	-	-	-	-	0.40	1	1.5	1	0;3	n	1.00	2	0.0	2	0;0	y	0.00	0	0.5	0	0;1	n	0.00	0	1.0	0	0;2	n	-	-	-	-	-	-	0.00	0	1.0	0	1;1	n	1.00	1	0.0	1	0;0	n	0.00	0	0.5	0	0;1	n	-	-	-	-	-	-	0.00	0	0.5	0	0;1	n	0.67	1	0.5	1	1;0	n	ENSMUSG00000037907.17	Ankrd13b	chr11	protein_coding	ankyrin repeat domain 13b
novel_NIR_3558	chr11	77363025	77363128	-	77362649	77363128	A3SS	ENSMUST00000037593.14	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000037907.17	Ankrd13b	chr11	protein_coding	ankyrin repeat domain 13b
novel_NIR_3559	chr11	77363025	77363128	-	77363005	77363128	A3SS	ENSMUST00000092892.10	novel	1.00	2	0	2	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000037907.17	Ankrd13b	chr11	protein_coding	ankyrin repeat domain 13b
novel_NIR_3560	chr11	77399817	77399912	-	77399817	77399902	A5SS	ENSMUST00000060417.11	novel	0.00	0	10	0	10	n	0.14	1	6	1	6	n	0.00	0	4	0	4	n	0.30	3	7	3	7	y	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.21	3	11	3	11	y	0.08	1	11	1	11	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	ENSMUSG00000044328.14	Trp53i13	chr11	protein_coding	transformation related protein 53 inducible protein 13
novel_NIR_3561	chr11	77399817	77399912	-	77399817	77400424	A5SS	ENSMUST00000124690.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000044328.14	Trp53i13	chr11	protein_coding	transformation related protein 53 inducible protein 13
novel_NIR_3562	chr11	77409663	77410560	+	77409663	77429061	A3SS	ENSMUST00000147386.2	novel	1.00	2	0	2	0	y	0.86	6	1	6	1	y	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000000686.12	Abhd15	chr11	protein_coding	abhydrolase domain containing 15
novel_NIR_3563	chr11	77409663	77410647	+	77409663	77429061	A3SS	ENSMUST00000147386.2	novel	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000000686.12	Abhd15	chr11	protein_coding	abhydrolase domain containing 15
novel_NIR_3564	chr11	77409663	77410977	+	77409663	77429061	A3SS	ENSMUST00000147386.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.25	1	3	1	3	n	ENSMUSG00000000686.12	Abhd15	chr11	protein_coding	abhydrolase domain containing 15
novel_NIR_3565	chr11	77409663	77420153	+	77409663	77429061	A3SS	ENSMUST00000147386.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.62	5	3	5	3	y	ENSMUSG00000000686.12	Abhd15	chr11	protein_coding	abhydrolase domain containing 15
novel_NIR_3566	chr11	77476320	77492525	-	77476320	77498034	A5SS	ENSMUST00000058496.8	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	8	0	8	0	n	1.00	5	0	5	0	n	1.00	6	0	6	0	y	0.44	4	5	4	5	n	1.00	4	0	4	0	n	1.00	2	0	2	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	1.00	5	0	5	0	y	ENSMUSG00000017291.14	Taok1	chr11	protein_coding	TAO kinase 1
novel_NIR_3567	chr11	77476320;77492587	77492525;77498034	-	77476320	77498034	cassetteExon	ENSMUST00000058496.8	novel	1.00	1.0	0	1;1	0	n	1.00	0.5	0	1;0	0	n	1.00	6.0	0	8;4	0	y	1.00	4.0	0	5;3	0	y	1.00	3.0	0	6;0	0	n	0.47	4.5	5	4;5	5	y	1.00	3.0	0	4;2	0	y	1.00	2.5	0	2;3	0	y	-	-	-	-	-	-	1.00	1.0	0	2;0	0	n	0.00	0.0	1	0;0	1	n	1.00	2.5	0	5;0	0	n	ENSMUSG00000017291.14	Taok1	chr11	protein_coding	TAO kinase 1
novel_NIR_3568	chr11	77496464	77498034	-	77476320	77498034	A3SS	ENSMUST00000058496.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	0.00	0	5	0	5	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000017291.14	Taok1	chr11	protein_coding	TAO kinase 1
novel_NIR_3569	chr11	77655024	77668061	+	77656542	77668061	5pMXE	ENSMUST00000164315.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.11	1	8	1	8	n	0.00	0	2	0	2	n	0.14	1	6	1	6	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000000631.21	Myo18a	chr11	protein_coding	myosin XVIIIA
novel_NIR_3570	chr11	77655024	77668061	+	77657712	77668061	5pMXE	ENSMUST00000108376.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000000631.21	Myo18a	chr11	protein_coding	myosin XVIIIA
novel_NIR_3571	chr11	77655024	77668061	+	77663051	77668061	5pMXE	ENSMUST00000102488.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000000631.21	Myo18a	chr11	protein_coding	myosin XVIIIA
novel_NIR_3572	chr11	77748671;77749483	77749428;77755517	+	77748671;77751157	77749845;77755517	MXE	ENSMUST00000135375.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	0.5	0.5	1;0	1;0	n	-	-	-	-	-	-	0.04	0.5	13.0	0;1	6;20	n	-	-	-	-	-	-	1.00	2.0	0.0	2;2	0;0	y	1.00	0.5	0.0	1;0	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000000631.21	Myo18a	chr11	protein_coding	myosin XVIIIA
novel_NIR_3573	chr11	77774818	77784493	-	77774818	77775239	5pMXE	ENSMUST00000155401.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000017453.5	Pipox	chr11	protein_coding	pipecolic acid oxidase
novel_NIR_3574	chr11	77915735	77915850	+	77915755	77915850	A5SS	ENSMUST00000123662.2	novel	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.29	2	5	2	5	y	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	1.00	3	0	3	0	y	ENSMUSG00000037791.16	Phf12	chr11	protein_coding	PHD finger protein 12
novel_NIR_3575	chr11	77928938	77931088	+	77928938	77940304	A3SS	ENSMUST00000072289.12	novel	0.00	0	49	0	49	n	0.07	3	37	3	37	n	0.15	14	78	14	78	y	0.06	3	49	3	49	n	0.13	11	76	11	76	n	0.05	3	53	3	53	n	0.09	7	71	7	71	n	0.10	4	38	4	38	n	0.00	0	45	0	45	n	0.05	5	93	5	93	n	0.00	0	41	0	41	n	0.09	5	52	5	52	n	ENSMUSG00000061981.15	Flot2	chr11	protein_coding	flotillin 2
novel_NIR_3576	chr11	77931157	77931575	+	77931157	77940304	A3SS	ENSMUST00000136353.2	novel	0.60	3	2	3	2	y	0.00	0	4	0	4	n	0.12	2	14	2	14	n	1.00	1	0	1	0	n	0.24	5	16	5	16	y	0.31	4	9	4	9	y	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.50	2	2	2	2	y	0.33	2	4	2	4	y	ENSMUSG00000061981.15	Flot2	chr11	protein_coding	flotillin 2
novel_NIR_3577	chr11	77940385	77941841	+	77940385	77944189	A3SS	ENSMUST00000148162.9	novel	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.21	4	15	4	15	y	0.00	0	4	0	4	n	0.06	1	16	1	16	n	0.00	0	17	0	17	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	3	0	3	n	0.06	1	16	1	16	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	ENSMUSG00000061981.15	Flot2	chr11	protein_coding	flotillin 2
novel_NIR_3578	chr11	77940385	77944026	+	77940385	77944189	A3SS	ENSMUST00000148162.9	novel	0.29	2	5	2	5	y	0.17	1	5	1	5	n	0.21	4	15	4	15	y	0.50	4	4	4	4	y	0.20	4	16	4	16	y	0.00	0	17	0	17	n	0.12	1	7	1	7	n	0.07	1	14	1	14	n	0.62	5	3	5	3	y	0.16	3	16	3	16	y	0.20	1	4	1	4	n	0.00	0	8	0	8	n	ENSMUSG00000061981.15	Flot2	chr11	protein_coding	flotillin 2
novel_NIR_3579	chr11	78034040	78039140	+	78034040	78044523	A3SS	ENSMUST00000073705.12	novel	0.00	0	7	0	7	n	0.25	1	3	1	3	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.38	3	5	3	5	y	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.11	1	8	1	8	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	ENSMUSG00000037750.17	Fam222b	chr11	protein_coding	family with sequence similarity 222, member B
novel_NIR_3580	chr11	78034040	78039140	+	78034040	78044635	A3SS	ENSMUST00000100782.4	novel	0.00	0	8	0	8	n	0.08	1	11	1	11	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.33	3	6	3	6	y	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.12	1	7	1	7	n	0.00	0	19	0	19	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	ENSMUSG00000037750.17	Fam222b	chr11	protein_coding	family with sequence similarity 222, member B
novel_NIR_3581	chr11	78069062	78069589	+	78069062	78069864	A3SS	ENSMUST00000147819.8	novel	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.43	3	4	3	4	y	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.00	0	13	0	13	n	ENSMUSG00000019437.18	Tlcd1	chr11	protein_coding	TLC domain containing 1
novel_NIR_3582	chr11	78069062	78069589	+	78069062	78070196	A3SS	ENSMUST00000145507.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000019437.18	Tlcd1	chr11	protein_coding	TLC domain containing 1
novel_NIR_3583	chr11	78069062	78069633	+	78069062	78069864	A3SS	ENSMUST00000147819.8	novel	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.50	4	4	4	4	y	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.00	0	13	0	13	n	ENSMUSG00000019437.18	Tlcd1	chr11	protein_coding	TLC domain containing 1
novel_NIR_3584	chr11	78069062	78069633	+	78069062	78070196	A3SS	ENSMUST00000145507.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000019437.18	Tlcd1	chr11	protein_coding	TLC domain containing 1
novel_NIR_3585	chr11	78136980	78141842	+	78141371	78141842	5pMXE	ENSMUST00000154080.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.43	3	4	3	4	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000002064.11	Sdf2	chr11	protein_coding	stromal cell derived factor 2
novel_NIR_3586	chr11	78142038	78145816	+	78142038	78145681	A3SS	ENSMUST00000154080.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	9	0	9	0	y	1.00	2	0	2	0	y	0.00	0	4	0	4	n	1.00	7	0	7	0	y	0.00	0	6	0	6	n	ENSMUSG00000002064.11	Sdf2	chr11	protein_coding	stromal cell derived factor 2
novel_NIR_3587	chr11	78214048	78215264	+	78214048	78214888	A3SS	ENSMUST00000148689.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000017390.16	Aldoc	chr11	protein_coding	aldolase C, fructose-bisphosphate
novel_NIR_3588	chr11	78239043	78239357	+	78239085	78239357	A5SS	ENSMUST00000002127.14	novel	0.00	0	24	0	24	n	0.09	1	10	1	10	n	0.00	0	35	0	35	n	0.17	2	10	2	10	y	0.00	0	40	0	40	n	0.03	1	29	1	29	n	0.03	1	35	1	35	n	0.00	0	40	0	40	n	0.00	0	11	0	11	n	0.00	0	38	0	38	n	0.00	0	39	0	39	n	0.00	0	20	0	20	n	ENSMUSG00000002058.14	Unc119	chr11	protein_coding	unc-119 lipid binding chaperone
novel_NIR_3589	chr11	78239085	78239361	+	78239085	78239291	A3SS	ENSMUST00000108295.8	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	ENSMUSG00000002058.14	Unc119	chr11	protein_coding	unc-119 lipid binding chaperone
novel_NIR_3590	chr11	78290019	78291302	-	78290019;78291031	78290910;78291302	ES	ENSMUST00000001122.6	novel	0.22	1	3.5	1	5;2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	7.5	0	7;8	n	0.22	1	3.5	1	5;2	n	-	-	-	-	-	-	0.00	0	2.0	0	2;2	n	0.00	0	2.5	0	5;0	n	0.25	2	6.0	2	9;3	y	0.00	0	7.0	0	8;6	n	0.00	0	10.0	0	12;8	n	0.11	1	8.5	1	12;5	n	ENSMUSG00000001095.6	Slc13a2	chr11	protein_coding	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2
novel_NIR_3591	chr11	78403292	78404746	+	78403631	78404746	A5SS	ENSMUST00000136284.2	novel	0.38	3	5	3	5	y	0.55	6	5	6	5	y	-	-	-	-	-	-	0.50	3	3	3	3	y	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.58	7	5	7	5	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	ENSMUSG00000001100.11	Poldip2	chr11	protein_coding	polymerase (DNA-directed), delta interacting protein 2
novel_NIR_3592	chr11	78858832	78862143	-	78860629	78862143	A3SS&ES	ENSMUST00000073001.5	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000001123.16	Lgals9	chr11	protein_coding	lectin, galactose binding, soluble 9
novel_NIR_3593	chr11	79132982	79133433	-	79132982	79133325	A5SS	ENSMUST00000153585.2	novel	0.00	0	27	0	27	n	0.00	0	13	0	13	n	0.21	4	15	4	15	y	0.18	3	14	3	14	y	0.00	0	29	0	29	n	0.00	0	9	0	9	n	0.00	0	30	0	30	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.17	2	10	2	10	y	0.00	0	9	0	9	n	0.00	0	28	0	28	n	ENSMUSG00000017677.12	Wsb1	chr11	protein_coding	WD repeat and SOCS box-containing 1
novel_NIR_3594	chr11	79132982	79133433	-	79132982	79134226	A5SS	ENSMUST00000131818.8	novel	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.36	4	7	4	7	y	0.38	3	5	3	5	y	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	8	0	8	n	ENSMUSG00000017677.12	Wsb1	chr11	protein_coding	WD repeat and SOCS box-containing 1
novel_NIR_3595	chr11	79132982	79134238	-	79132982	79133325	5pMXE	ENSMUST00000153585.2	novel	0.07	2	27	2	27	n	0.00	0	13	0	13	n	0.17	3	15	3	15	y	0.07	1	14	1	14	n	0.12	4	29	4	29	n	0.00	0	9	0	9	n	0.06	2	30	2	30	n	0.08	1	11	1	11	n	0.07	1	14	1	14	n	0.09	1	10	1	10	n	0.10	1	9	1	9	n	0.12	4	28	4	28	n	ENSMUSG00000017677.12	Wsb1	chr11	protein_coding	WD repeat and SOCS box-containing 1
novel_NIR_3596	chr11	79132982	79134238	-	79132982	79134226	A5SS	ENSMUST00000131818.8	novel	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.30	3	7	3	7	y	0.17	1	5	1	5	n	0.40	4	6	4	6	y	0.00	0	5	0	5	n	0.25	2	6	2	6	y	0.33	1	2	1	2	n	0.25	1	3	1	3	n	0.33	1	2	1	2	n	1.00	1	0	1	0	n	0.33	4	8	4	8	y	ENSMUSG00000017677.12	Wsb1	chr11	protein_coding	WD repeat and SOCS box-containing 1
novel_NIR_3597	chr11	79141975	79164603	-	79150248	79164603	3pMXE	ENSMUST00000208268.2	novel	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	20	0	20	n	0.27	3	8	3	8	y	0.00	0	19	0	19	n	0.20	1	4	1	4	n	0.00	0	24	0	24	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	18	0	18	n	0.00	0	10	0	10	n	0.00	0	26	0	26	n	ENSMUSG00000108822.2	Gm44787	chr11	lncRNA	predicted gene 44787
novel_NIR_3598	chr11	79230885	79232128	+	79230885	79235659	A3SS	ENSMUST00000145839.2	novel	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.10	2	19	2	19	n	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.20	1	4	1	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.50	1	1	1	1	n	0.33	1	2	1	2	n	ENSMUSG00000020716.17	Nf1	chr11	protein_coding	neurofibromin 1
novel_NIR_3599	chr11	79230885	79232128	+	79230885	79275001	A3SS	ENSMUST00000219057.2	novel	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	3	0	3	n	0.14	1	6	1	6	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.50	1	1	1	1	n	1.00	1	0	1	0	n	ENSMUSG00000020716.17	Nf1	chr11	protein_coding	neurofibromin 1
novel_NIR_3600	chr11	79230885	79234720	+	79230885	79275001	A3SS	ENSMUST00000219057.2	novel	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.96	27	1	27	1	y	0.25	1	3	1	3	n	0.25	2	6	2	6	y	0.85	11	2	11	2	y	0.62	5	3	5	3	y	0.25	1	3	1	3	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.80	4	1	4	1	y	-	-	-	-	-	-	ENSMUSG00000020716.17	Nf1	chr11	protein_coding	neurofibromin 1
novel_NIR_3601	chr11	79230885;79234771	79234720;79235659	+	79230885	79235659	cassetteExon	ENSMUST00000145839.2	novel	0.67	2.0	1	1;3	1	n	0.50	2.0	2	0;4	2	n	0.62	31.0	19	27;35	19	y	0.33	1.0	2	1;1	2	n	0.41	3.5	5	2;5	5	y	0.73	13.5	5	11;16	5	y	0.60	6.0	4	5;7	4	y	1.00	2.5	0	1;4	0	n	0.33	1.5	3	0;3	3	n	0.50	2.0	2	1;3	2	n	0.82	4.5	1	4;5	1	y	0.20	0.5	2	0;1	2	n	ENSMUSG00000020716.17	Nf1	chr11	protein_coding	neurofibromin 1
novel_NIR_3602	chr11	79234771	79235659	+	79230885	79235659	A5SS	ENSMUST00000145839.2	novel	0.75	3	1	3	1	n	0.67	4	2	4	2	y	0.65	35	19	35	19	n	0.33	1	2	1	2	n	0.50	5	5	5	5	n	0.76	16	5	16	5	n	0.64	7	4	7	4	n	1.00	4	0	4	0	n	0.50	3	3	3	3	y	0.60	3	2	3	2	n	0.83	5	1	5	1	n	0.33	1	2	1	2	n	ENSMUSG00000020716.17	Nf1	chr11	protein_coding	neurofibromin 1
novel_NIR_3603	chr11	79349126	79349597	+	79345028	79349597	A5SS	ENSMUST00000219057.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.29	6	15	6	15	y	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	ENSMUSG00000020716.17	Nf1	chr11	protein_coding	neurofibromin 1
novel_NIR_3604	chr11	79459277	79459476	+	79456846	79459476	A5SS	ENSMUST00000108251.9	novel	0.05	1	18	1	18	n	0.00	0	10	0	10	n	0.03	1	28	1	28	n	0.15	3	17	3	17	y	0.00	0	17	0	17	n	0.00	0	13	0	13	n	0.04	1	22	1	22	n	0.07	1	14	1	14	n	0.00	0	25	0	25	n	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	ENSMUSG00000020716.17	Nf1	chr11	protein_coding	neurofibromin 1
novel_NIR_3605	chr11	79571837	79574236	+	79571837	79574167	A3SS	ENSMUST00000017783.13	novel	0.15	2	11	2	11	y	0.00	0	13	0	13	n	0.08	1	12	1	12	n	0.18	3	14	3	14	y	0.14	3	19	3	19	n	0.00	0	10	0	10	n	0.05	1	20	1	20	n	0.00	0	17	0	17	n	0.00	0	15	0	15	n	0.12	1	7	1	7	n	0.24	4	13	4	13	y	0.10	1	9	1	9	n	ENSMUSG00000017639.14	Rab11fip4	chr11	protein_coding	RAB11 family interacting protein 4 (class II)
novel_NIR_3606	chr11	79673382	79679135	-	79673382	79673596	5pMXE	ENSMUST00000150312.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000086474.3	9130204K15Rik	chr11	lncRNA	RIKEN cDNA 9130204K15 gene
novel_NIR_3607	chr11	79673382	79679135	-	79673382	79686922	A5SS	ENSMUST00000131441.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000086474.3	9130204K15Rik	chr11	lncRNA	RIKEN cDNA 9130204K15 gene
novel_NIR_3608	chr11	79673382	79679135	-	79673382	79751410	A5SS	ENSMUST00000159495.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000086474.3	9130204K15Rik	chr11	lncRNA	RIKEN cDNA 9130204K15 gene
novel_NIR_3609	chr11	79673382	79701058	-	79673382	79673596	5pMXE	ENSMUST00000150312.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000086474.3	9130204K15Rik	chr11	lncRNA	RIKEN cDNA 9130204K15 gene
novel_NIR_3610	chr11	79673382	79701058	-	79673382	79751410	A5SS	ENSMUST00000159495.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000086474.3	9130204K15Rik	chr11	lncRNA	RIKEN cDNA 9130204K15 gene
novel_NIR_3611	chr11	79673382	79701058	-	79673382;79687117	79686922;79701058	ES	ENSMUST00000131441.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	ENSMUSG00000086474.3	9130204K15Rik	chr11	lncRNA	RIKEN cDNA 9130204K15 gene
novel_NIR_3612	chr11	80050273	80050989	+	80047862	80050989	A5SS	ENSMUST00000021050.14	novel	0.00	0	71	0	71	n	0.00	0	55	0	55	n	0.00	0	44	0	44	n	0.01	1	89	1	89	n	0.06	7	116	7	116	n	0.08	3	35	3	35	n	0.03	3	94	3	94	n	0.06	2	31	2	31	n	0.16	8	43	8	43	y	0.02	3	128	3	128	n	0.05	4	75	4	75	n	0.03	3	107	3	107	n	ENSMUSG00000020709.16	Adap2	chr11	protein_coding	ArfGAP with dual PH domains 2
novel_NIR_3613	chr11	80051068	80052696	+	80051068	80056499	A3SS	ENSMUST00000134118.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020709.16	Adap2	chr11	protein_coding	ArfGAP with dual PH domains 2
novel_NIR_3614	chr11	80080193	80087699	+	80080193	80080682	3pMXE	ENSMUST00000134909.2	novel	0.00	0	3	0	3	n	0.25	1	3	1	3	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	2	0	2	0	y	0.88	7	1	7	1	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	0.75	6	2	6	2	y	-	-	-	-	-	-	0.80	4	1	4	1	y	ENSMUSG00000020707.7	Rnf135	chr11	protein_coding	ring finger protein 135
novel_NIR_3615	chr11	80080193	80087699	+	80080193;80084874	80084712;80087699	ES	ENSMUST00000017839.3	novel	0.00	0	27.5	0	23;32	n	0.05	1	20.5	1	21;20	n	0.12	3	21.0	3	27;15	n	0.00	0	20.5	0	22;19	n	0.15	6	33.5	6	34;33	y	0.15	2	11.0	2	11;11	y	0.33	7	14.5	7	10;19	y	0.05	1	19.0	1	21;17	n	0.24	4	13.0	4	9;17	y	0.17	6	30.0	6	20;40	y	0.00	0	12.5	0	15;10	n	0.15	4	22.5	4	23;22	y	ENSMUSG00000020707.7	Rnf135	chr11	protein_coding	ring finger protein 135
novel_NIR_3616	chr11	80264997	80266333	-	80265043	80266333	A3SS	ENSMUST00000179332.8	novel	0.00	0	15	0	15	n	0.20	2	8	2	8	y	0.00	0	32	0	32	n	0.00	0	25	0	25	n	0.00	0	22	0	22	n	0.00	0	14	0	14	n	0.15	4	22	4	22	y	0.00	0	20	0	20	n	0.00	0	20	0	20	n	0.00	0	22	0	22	n	0.00	0	16	0	16	n	0.00	0	19	0	19	n	ENSMUSG00000057181.16	5730455P16Rik	chr11	protein_coding	RIKEN cDNA 5730455P16 gene
novel_NIR_3617	chr11	80286362	80286618	+	80286399	80286618	A5SS	ENSMUST00000178665.8	novel	0.00	0	9	0	9	n	0.18	2	9	2	9	y	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.00	0	19	0	19	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	11	0	11	n	ENSMUSG00000017421.19	Zfp207	chr11	protein_coding	zinc finger protein 207
novel_NIR_3618	chr11	80293537	80294427	+	80293537;80294234	80294191;80294427	ES	ENSMUST00000178665.8	novel	0.00	0	1.5	0	1;2	n	0.00	0	2.5	0	0;5	n	0.00	0	1.5	0	0;3	n	0.00	0	3.0	0	3;3	n	0.00	0	5.0	0	2;8	n	-	-	-	-	-	-	0.00	0	3.5	0	4;3	n	0.00	0	3.0	0	2;4	n	0.00	0	6.0	0	7;5	n	0.00	0	8.5	0	9;8	n	0.00	0	4.0	0	4;4	n	0.29	2	5.0	2	5;5	y	ENSMUSG00000017421.19	Zfp207	chr11	protein_coding	zinc finger protein 207
novel_NIR_3619	chr11	80293550	80294191	+	80293537	80294191	A5SS	ENSMUST00000178665.8	novel	0.00	0	1	0	1	n	1.00	5	0	5	0	y	1.00	1	0	1	0	n	0.50	3	3	3	3	y	0.75	6	2	6	2	y	-	-	-	-	-	-	0.33	2	4	2	4	y	0.33	1	2	1	2	n	0.12	1	7	1	7	n	0.31	4	9	4	9	y	0.56	5	4	5	4	y	0.44	4	5	4	5	y	ENSMUSG00000017421.19	Zfp207	chr11	protein_coding	zinc finger protein 207
novel_NIR_3620	chr11	80320231	80322531	+	80320767	80322531	5pMXE	ENSMUST00000173565.2	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000017428.17	Psmd11	chr11	protein_coding	proteasome (prosome, macropain) 26S subunit, non-ATPase, 11
novel_NIR_3621	chr11	80335225	80336068	+	80322632	80336068	A5SS	ENSMUST00000174743.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000017428.17	Psmd11	chr11	protein_coding	proteasome (prosome, macropain) 26S subunit, non-ATPase, 11
novel_NIR_3622	chr11	80335225	80336068	+	80329456	80336068	A5SS	ENSMUST00000172615.8	novel	0.00	0	7	0	7	n	0.17	1	5	1	5	n	0.00	0	10	0	10	n	0.17	1	5	1	5	n	0.00	0	17	0	17	n	0.40	2	3	2	3	y	0.43	3	4	3	4	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000017428.17	Psmd11	chr11	protein_coding	proteasome (prosome, macropain) 26S subunit, non-ATPase, 11
novel_NIR_3623	chr11	80338231	80347066	+	80329201	80347066	A5SS	ENSMUST00000172773.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000017428.17	Psmd11	chr11	protein_coding	proteasome (prosome, macropain) 26S subunit, non-ATPase, 11
novel_NIR_3624	chr11	80561845	80563631	-	80561845	80565440	A5SS	ENSMUST00000041065.14	novel	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	20	0	20	n	0.20	2	8	2	8	y	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	ENSMUSG00000035441.15	Myo1d	chr11	protein_coding	myosin ID
novel_NIR_3625	chr11	81872779	81874459	-	81874179	81874459	3pMXE	ENSMUST00000207942.2	novel	0.18	2	9	2	9	y	0.53	10	9	10	9	y	0.20	1	4	1	4	n	0.55	6	5	6	5	y	0.24	4	13	4	13	y	0.38	5	8	5	8	y	0.50	14	14	14	14	y	0.43	6	8	6	8	y	0.67	6	3	6	3	y	0.42	11	15	11	15	y	0.33	1	2	1	2	n	0.41	7	10	7	10	y	ENSMUSG00000109297.2	Gm31522	chr11	lncRNA	predicted gene, 31522
novel_NIR_3626	chr11	81874556	81874837	-	81874556	81876200	A5SS	ENSMUST00000207942.2	novel	0.40	6	9	6	9	y	0.20	1	4	1	4	n	1.00	3	0	3	0	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.14	1	6	1	6	n	0.33	6	12	6	12	n	0.53	9	8	9	8	y	0.20	3	12	3	12	y	0.33	5	10	5	10	y	0.00	0	7	0	7	n	0.17	1	5	1	5	n	ENSMUSG00000109297.2	Gm31522	chr11	lncRNA	predicted gene, 31522
novel_NIR_3627	chr11	81875440	81876200	-	81874556	81876200	A3SS	ENSMUST00000207942.2	novel	0.00	0	9	0	9	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.29	2	5	2	5	y	0.00	0	6	0	6	n	0.08	1	12	1	12	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.17	2	10	2	10	y	0.00	0	7	0	7	n	0.00	0	5	0	5	n	ENSMUSG00000109297.2	Gm31522	chr11	lncRNA	predicted gene, 31522
novel_NIR_3628	chr11	81875450	81876200	-	81874556	81876200	A3SS	ENSMUST00000207942.2	novel	0.25	3	9	3	9	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.08	1	12	1	12	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	ENSMUSG00000109297.2	Gm31522	chr11	lncRNA	predicted gene, 31522
novel_NIR_3629	chr11	81875738	81876200	-	81874556	81876200	A3SS	ENSMUST00000207942.2	novel	0.00	0	9	0	9	n	0.20	1	4	1	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.08	1	12	1	12	n	0.11	1	8	1	8	n	0.08	1	12	1	12	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.29	2	5	2	5	y	ENSMUSG00000109297.2	Gm31522	chr11	lncRNA	predicted gene, 31522
novel_NIR_3630	chr11	81876485	81876640	-	81876485	81879320	A5SS	ENSMUST00000207942.2	novel	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000109297.2	Gm31522	chr11	lncRNA	predicted gene, 31522
novel_NIR_3631	chr11	81876485	81876701	-	81876485	81879320	A5SS	ENSMUST00000207942.2	novel	1.00	4	0	4	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000109297.2	Gm31522	chr11	lncRNA	predicted gene, 31522
novel_NIR_3632	chr11	81876485	81910695	-	81876485;81879497	81879320;81910695	ES	ENSMUST00000207942.2	novel	0.00	0	7.0	0	0;14	n	0.00	0	1.5	0	0;3	n	0.00	0	2.5	0	0;5	n	0.00	0	2.0	0	0;4	n	0.00	0	6.5	0	0;13	n	0.00	0	1.5	0	0;3	n	0.25	1	3.0	1	0;6	n	0.00	0	4.0	0	0;8	n	0.27	2	5.5	2	0;11	y	0.11	1	8.0	1	0;16	n	0.00	0	4.5	0	0;9	n	0.00	0	8.0	0	0;16	n	ENSMUSG00000109297.2	Gm31522	chr11	lncRNA	predicted gene, 31522
novel_NIR_3633	chr11	82630531	82632889	-	82630531	82632102	A5SS&ES	ENSMUST00000021040.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020698.12	Cct6b	chr11	protein_coding	chaperonin containing Tcp1, subunit 6b (zeta)
novel_NIR_3634	chr11	82671121	82671682	-	82671124	82671682	A3SS	ENSMUST00000152784.8	novel	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.09	2	20	2	20	n	0.00	0	10	0	10	n	0.19	4	17	4	17	y	0.23	3	10	3	10	y	0.14	2	12	2	12	n	0.14	2	12	2	12	n	0.08	1	11	1	11	n	0.00	0	18	0	18	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	ENSMUSG00000085175.8	Gm11423	chr11	lncRNA	predicted gene 11423
novel_NIR_3635	chr11	82672468	82674172	+	82672098	82674172	A5SS	ENSMUST00000173347.8	novel	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.50	4	4	4	4	y	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.14	1	6	1	6	n	-	-	-	-	-	-	0.00	0	7	0	7	n	ENSMUSG00000020697.17	Lig3	chr11	protein_coding	ligase III, DNA, ATP-dependent
novel_NIR_3636	chr11	82672468	82674172	+	82672102	82674172	A5SS	ENSMUST00000092849.12	novel	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.00	0	15	0	15	n	0.25	4	12	4	12	y	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.08	1	12	1	12	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	ENSMUSG00000020697.17	Lig3	chr11	protein_coding	ligase III, DNA, ATP-dependent
novel_NIR_3637	chr11	82692248	82694451	+	82692248	82694825	A3SS	ENSMUST00000172837.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000020697.17	Lig3	chr11	protein_coding	ligase III, DNA, ATP-dependent
novel_NIR_3638	chr11	82709429	82761481	-	82709429	82719556	5pMXE	ENSMUST00000074515.11	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000020696.19	Rffl	chr11	protein_coding	ring finger and FYVE like domain containing protein
novel_NIR_3639	chr11	82709429	82761481	-	82709429	82736578	A5SS&ES	ENSMUST00000071152.14	novel	0.22	2	7	2	7	y	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.10	1	9	1	9	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.25	3	9	3	9	y	ENSMUSG00000020696.19	Rffl	chr11	protein_coding	ring finger and FYVE like domain containing protein
novel_NIR_3640	chr11	82709429	82761481	-	82709429	82761834	A5SS	ENSMUST00000108173.10	novel	0.22	2	7	2	7	y	0.00	0	7	0	7	n	0.00	0	31	0	31	n	0.07	1	14	1	14	n	0.00	0	24	0	24	n	0.00	0	18	0	18	n	0.00	0	17	0	17	n	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.23	3	10	3	10	y	ENSMUSG00000020696.19	Rffl	chr11	protein_coding	ring finger and FYVE like domain containing protein
novel_NIR_3641	chr11	82709429	82761481	-	82709429;82725105	82724907;82761481	ES	ENSMUST00000093975.12	novel	0.67	2	1.0	2	2;0	y	-	-	-	-	-	-	0.00	0	2.0	0	4;0	n	0.67	1	0.5	1	1;0	n	0.00	0	1.5	0	3;0	n	0.00	0	0.5	0	1;0	n	0.00	0	1.0	0	2;0	n	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	0.86	3	0.5	3	1;0	y	ENSMUSG00000020696.19	Rffl	chr11	protein_coding	ring finger and FYVE like domain containing protein
novel_NIR_3642	chr11	82709429	82761593	-	82709429	82719556	5pMXE	ENSMUST00000074515.11	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020696.19	Rffl	chr11	protein_coding	ring finger and FYVE like domain containing protein
novel_NIR_3643	chr11	82709429	82761593	-	82709429	82736578	A5SS&ES	ENSMUST00000071152.14	novel	0.00	0	7	0	7	n	0.14	1	6	1	6	n	0.00	0	15	0	15	n	0.18	2	9	2	9	y	0.17	2	10	2	10	y	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.38	3	5	3	5	y	0.00	0	7	0	7	n	0.00	0	9	0	9	n	ENSMUSG00000020696.19	Rffl	chr11	protein_coding	ring finger and FYVE like domain containing protein
novel_NIR_3644	chr11	82709429	82761593	-	82709429	82761834	A5SS	ENSMUST00000108173.10	novel	0.00	0	7	0	7	n	0.12	1	7	1	7	n	0.00	0	31	0	31	n	0.12	2	14	2	14	n	0.08	2	24	2	24	n	0.00	0	18	0	18	n	0.00	0	17	0	17	n	0.00	0	14	0	14	n	0.08	1	12	1	12	n	0.16	3	16	3	16	y	0.00	0	11	0	11	n	0.00	0	10	0	10	n	ENSMUSG00000020696.19	Rffl	chr11	protein_coding	ring finger and FYVE like domain containing protein
novel_NIR_3645	chr11	82725105	82736578	-	82709429	82736578	A3SS	ENSMUST00000071152.14	novel	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.29	2	5	2	5	y	0.00	0	7	0	7	n	0.00	0	9	0	9	n	ENSMUSG00000020696.19	Rffl	chr11	protein_coding	ring finger and FYVE like domain containing protein
novel_NIR_3646	chr11	82793956	82794916	-	82793959	82794916	A3SS	ENSMUST00000167196.2	novel	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	1	2	1	2	n	ENSMUSG00000020692.15	Nle1	chr11	protein_coding	notchless homolog 1
novel_NIR_3647	chr11	82793956	82794916	-	82794023	82794916	A3SS	ENSMUST00000103213.10	novel	0.15	2	11	2	11	y	0.00	0	10	0	10	n	0.06	1	17	1	17	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.07	1	13	1	13	n	ENSMUSG00000020692.15	Nle1	chr11	protein_coding	notchless homolog 1
novel_NIR_3648	chr11	82820132	82820247	+	82819899	82820247	A5SS	ENSMUST00000018989.14	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.57	4	3	4	3	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	32	0	32	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000018845.15	Unc45b	chr11	protein_coding	unc-45 myosin chaperone B
novel_NIR_3649	chr11	82820132	82820247	+	82819905	82820247	A5SS	ENSMUST00000108160.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000018845.15	Unc45b	chr11	protein_coding	unc-45 myosin chaperone B
novel_NIR_3650	chr11	83188857	83189142	-	83189033	83189142	A3SS	ENSMUST00000153487.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000018733.11	Pex12	chr11	protein_coding	peroxisomal biogenesis factor 12
novel_NIR_3651	chr11	83189373	83189538	-	83189373	83189738	A5SS	ENSMUST00000136369.2	novel	1.00	3	0	3	0	y	1.00	5	0	5	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	5	0	5	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000018733.11	Pex12	chr11	protein_coding	peroxisomal biogenesis factor 12
novel_NIR_3652	chr11	83189373	83189538	-	83189379	83189538	A3SS	ENSMUST00000108146.8	novel	0.20	3	12	3	12	y	0.50	5	5	5	5	y	0.07	2	25	2	25	n	0.00	0	12	0	12	n	0.29	4	10	4	10	y	0.08	1	12	1	12	n	0.19	4	17	4	17	y	0.36	5	9	5	9	y	0.33	4	8	4	8	y	0.09	2	21	2	21	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	ENSMUSG00000018733.11	Pex12	chr11	protein_coding	peroxisomal biogenesis factor 12
novel_NIR_3653	chr11	83189373	83189666	-	83189373	83189738	A5SS	ENSMUST00000136369.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000018733.11	Pex12	chr11	protein_coding	peroxisomal biogenesis factor 12
novel_NIR_3654	chr11	83189373	83189666	-	83189379	83189666	A3SS	ENSMUST00000018877.9	novel	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000018733.11	Pex12	chr11	protein_coding	peroxisomal biogenesis factor 12
novel_NIR_3655	chr11	83364525	83372760	+	83364525;83372007	83371936;83372760	ES	ENSMUST00000126134.2	novel	1.00	2	0.0	2	0;0	y	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	1.00	4	0.0	4	0;0	y	1.00	4	0.0	4	0;0	y	1.00	1	0.0	1	0;0	n	1.00	6	0.0	6	0;0	y	1.00	1	0.0	1	0;0	n	1.00	3	0.0	3	0;0	y	1.00	3	0.0	3	0;0	y	-	-	-	-	-	-	1.00	3	0.0	3	0;0	y	ENSMUSG00000020680.16	Taf15	chr11	protein_coding	TATA-box binding protein associated factor 15
novel_NIR_3656	chr11	83595768	83600683	+	83600025	83600683	5pMXE	ENSMUST00000001009.14	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000000983.14	Wfdc18	chr11	protein_coding	WAP four-disulfide core domain 18
novel_NIR_3657	chr11	83656989	83657904	+	83656986	83657904	A5SS	ENSMUST00000001002.8	novel	0.17	1	5	1	5	n	0.29	2	5	2	5	y	0.00	0	9	0	9	n	0.22	2	7	2	7	y	0.15	2	11	2	11	y	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.00	0	8	0	8	n	0.17	3	15	3	15	y	0.12	1	7	1	7	n	0.17	3	15	3	15	y	ENSMUSG00000000976.14	Heatr6	chr11	protein_coding	HEAT repeat containing 6
novel_NIR_3658	chr11	83744033	83746730	+	83743115	83746730	A5SS	ENSMUST00000146786.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020679.12	Hnf1b	chr11	protein_coding	HNF1 homeobox B
novel_NIR_3659	chr11	83744033	83746730	+	83743940	83746730	A5SS	ENSMUST00000108113.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000020679.12	Hnf1b	chr11	protein_coding	HNF1 homeobox B
novel_NIR_3660	chr11	83773639	83779878	+	83773639	83779875	A3SS	ENSMUST00000021016.10	novel	0.04	1	24	1	24	n	0.11	3	25	3	25	n	0.15	8	46	8	46	y	0.14	4	24	4	24	n	0.13	6	40	6	40	n	0.28	12	31	12	31	y	0.15	6	35	6	35	y	0.25	6	18	6	18	y	0.27	7	19	7	19	y	0.14	6	36	6	36	n	0.18	6	27	6	27	y	0.15	6	34	6	34	y	ENSMUSG00000020679.12	Hnf1b	chr11	protein_coding	HNF1 homeobox B
novel_NIR_3661	chr11	83930147	83930486	+	83930147	83931623	A3SS	ENSMUST00000092834.12	novel	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.50	2	2	2	2	y	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	ENSMUSG00000034940.16	Synrg	chr11	protein_coding	synergin, gamma
novel_NIR_3662	chr11	83975583	83976458	-	83975583	83976502	A5SS	ENSMUST00000125566.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	ENSMUSG00000018651.15	Tada2a	chr11	protein_coding	transcriptional adaptor 2A
novel_NIR_3663	chr11	83995106	84000780	-	83995106;83997172	83997015;84000780	ES	ENSMUST00000018795.13	novel	0.00	0	7.0	0	8;6	n	0.11	1	8.0	1	10;6	n	0.00	0	11.0	0	9;13	n	0.00	0	7.5	0	11;4	n	0.00	0	12.0	0	12;12	n	0.11	1	8.5	1	10;7	n	0.00	0	8.5	0	7;10	n	0.32	3	6.5	3	7;6	y	0.00	0	8.0	0	8;8	n	0.10	1	9.0	1	9;9	n	0.29	1	2.5	1	1;4	n	0.00	0	9.5	0	13;6	n	ENSMUSG00000018651.15	Tada2a	chr11	protein_coding	transcriptional adaptor 2A
novel_NIR_3664	chr11	84071298	84083905	+	84020956	84083905	A5SS	ENSMUST00000133811.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020532.19	Acaca	chr11	protein_coding	acetyl-Coenzyme A carboxylase alpha
novel_NIR_3665	chr11	84071298	84083905	+	84064381	84083905	A5SS	ENSMUST00000103201.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020532.19	Acaca	chr11	protein_coding	acetyl-Coenzyme A carboxylase alpha
novel_NIR_3666	chr11	84071298	84083905	+	84070752	84083905	A5SS	ENSMUST00000137500.9	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.17	1	5	1	5	n	0.22	2	7	2	7	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000020532.19	Acaca	chr11	protein_coding	acetyl-Coenzyme A carboxylase alpha
novel_NIR_3667	chr11	84071298	84083905	+	84071422	84083905	A5SS&ES	ENSMUST00000136463.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020532.19	Acaca	chr11	protein_coding	acetyl-Coenzyme A carboxylase alpha
novel_NIR_3668	chr11	84071298	84086264	+	84064381	84086264	A5SS	ENSMUST00000183548.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000020532.19	Acaca	chr11	protein_coding	acetyl-Coenzyme A carboxylase alpha
novel_NIR_3669	chr11	84071298	84086264	+	84070752	84086264	A5SS	ENSMUST00000130012.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.75	3	1	3	1	y	0.00	0	8	0	8	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	ENSMUSG00000020532.19	Acaca	chr11	protein_coding	acetyl-Coenzyme A carboxylase alpha
novel_NIR_3670	chr11	84071298	84086264	+	84083951	84086264	A5SS&ES	ENSMUST00000133811.3	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.23	3	10	3	10	y	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.10	1	9	1	9	n	ENSMUSG00000020532.19	Acaca	chr11	protein_coding	acetyl-Coenzyme A carboxylase alpha
novel_NIR_3671	chr11	84340013	84345773	-	84340013	84358287	A5SS	ENSMUST00000018841.3	novel	0.02	1	44	1	44	n	0.00	0	39	0	39	n	0.00	0	36	0	36	n	0.16	4	21	4	21	y	0.04	1	26	1	26	n	0.00	0	12	0	12	n	0.12	5	36	5	36	n	0.10	2	18	2	18	n	0.00	0	32	0	32	n	0.06	2	34	2	34	n	0.04	2	47	2	47	n	0.04	2	53	2	53	n	ENSMUSG00000018697.15	Aatf	chr11	protein_coding	apoptosis antagonizing transcription factor
novel_NIR_3672	chr11	84363992	84401025	-	84363992	84382289	5pMXE	ENSMUST00000127042.8	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000018697.15	Aatf	chr11	protein_coding	apoptosis antagonizing transcription factor
novel_NIR_3673	chr11	8443337	8453758	-	8443337	8468199	A5SS	ENSMUST00000239091.2	novel	0.46	6	7	6	7	y	0.00	0	5	0	5	n	0.00	0	25	0	25	n	0.64	16	9	16	9	y	0.06	1	17	1	17	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.27	4	11	4	11	y	0.30	3	7	3	7	y	0.48	12	13	12	13	y	0.56	5	4	5	4	y	0.52	11	10	11	10	y	ENSMUSG00000020422.15	Tns3	chr11	protein_coding	tensin 3
novel_NIR_3674	chr11	84716303	84719577	-	84716347	84719577	A3SS	ENSMUST00000151496.2	novel	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.09	1	10	1	10	n	0.22	2	7	2	7	y	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	ENSMUSG00000034449.8	Dhrs11	chr11	protein_coding	dehydrogenase/reductase (SDR family) member 11
novel_NIR_3675	chr11	84716400	84719577	-	84716347	84719577	A3SS	ENSMUST00000151496.2	novel	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.40	2	3	2	3	y	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	ENSMUSG00000034449.8	Dhrs11	chr11	protein_coding	dehydrogenase/reductase (SDR family) member 11
novel_NIR_3676	chr11	84727333	84727425	-	84727361	84727425	A3SS	ENSMUST00000168267.2	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020530.15	Ggnbp2	chr11	protein_coding	gametogenetin binding protein 2
novel_NIR_3677	chr11	84742601	84744880	-	84743362	84744880	3pMXE	ENSMUST00000134043.2	novel	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.67	2	1	2	1	y	0.00	0	5	0	5	n	ENSMUSG00000020530.15	Ggnbp2	chr11	protein_coding	gametogenetin binding protein 2
novel_NIR_3678	chr11	84748949	84749266	-	84745206	84749266	A3SS	ENSMUST00000018547.9	novel	-	-	-	-	-	-	0.60	3	2	3	2	y	0.33	2	4	2	4	y	0.80	4	1	4	1	y	0.20	1	4	1	4	n	0.17	1	5	1	5	n	0.36	4	7	4	7	y	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.19	3	13	3	13	y	ENSMUSG00000020530.15	Ggnbp2	chr11	protein_coding	gametogenetin binding protein 2
novel_NIR_3679	chr11	84760898	84761500	-	84760898	84761289	5pMXE	ENSMUST00000166425.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000020530.15	Ggnbp2	chr11	protein_coding	gametogenetin binding protein 2
novel_NIR_3680	chr11	84760898	84761500	-	84760898	84761431	A5SS	ENSMUST00000108081.9	novel	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.04	1	27	1	27	n	0.18	4	18	4	18	y	0.03	1	34	1	34	n	0.10	2	18	2	18	n	0.00	0	17	0	17	n	0.00	0	19	0	19	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.06	1	16	1	16	n	0.00	0	16	0	16	n	ENSMUSG00000020530.15	Ggnbp2	chr11	protein_coding	gametogenetin binding protein 2
novel_NIR_3681	chr11	84760898	84761500	-	84760898	84761464	A5SS	ENSMUST00000172405.8	novel	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.07	1	13	1	13	n	0.44	4	5	4	5	y	0.12	1	7	1	7	n	0.22	2	7	2	7	y	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.25	1	3	1	3	n	0.00	0	10	0	10	n	ENSMUSG00000020530.15	Ggnbp2	chr11	protein_coding	gametogenetin binding protein 2
novel_NIR_3682	chr11	84760898	84761500	-	84760898	84761516	A5SS	ENSMUST00000167429.2	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.80	4	1	4	1	y	0.14	1	6	1	6	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.00	0	4	0	4	n	ENSMUSG00000020530.15	Ggnbp2	chr11	protein_coding	gametogenetin binding protein 2
novel_NIR_3683	chr11	84772079	84773412	+	84771337	84773412	A5SS	ENSMUST00000093969.11	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.17	2	10	2	10	n	0.67	2	1	2	1	y	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.20	1	4	1	4	n	-	-	-	-	-	-	ENSMUSG00000020527.15	Myo19	chr11	protein_coding	myosin XIX
novel_NIR_3684	chr11	84804378	84805037	-	84804262	84805037	A3SS	ENSMUST00000127838.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020526.13	Znhit3	chr11	protein_coding	zinc finger, HIT type 3
novel_NIR_3685	chr11	84923049	84927306	-	84923049	84927348	A5SS	ENSMUST00000108075.9	novel	1.00	3	0	3	0	y	1.00	3	0	3	0	y	0.88	23	3	23	3	y	1.00	20	0	20	0	y	0.91	21	2	21	2	y	0.67	8	4	8	4	y	0.96	24	1	24	1	y	0.81	13	3	13	3	y	0.67	8	4	8	4	y	0.85	28	5	28	5	y	1.00	13	0	13	0	y	0.81	21	5	21	5	y	ENSMUSG00000000804.15	Usp32	chr11	protein_coding	ubiquitin specific peptidase 32
novel_NIR_3686	chr11	84923049	84927306	-	84923049;84925132	84925097;84927306	ES	ENSMUST00000174602.2	novel	0.67	3	1.5	3	2;1	y	0.86	3	0.5	3	0;1	y	0.96	23	1.0	23	1;1	y	1.00	20	0.0	20	0;0	y	0.89	21	2.5	21	1;4	y	0.84	8	1.5	8	1;2	y	0.92	24	2.0	24	2;2	y	0.90	13	1.5	13	2;1	y	0.59	8	5.5	8	7;4	y	0.93	28	2.0	28	2;2	y	0.93	13	1.0	13	1;1	y	0.91	21	2.0	21	2;2	y	ENSMUSG00000000804.15	Usp32	chr11	protein_coding	ubiquitin specific peptidase 32
novel_NIR_3687	chr11	84950085	84971957	-	84950085;84968250	84968091;84971957	ES	ENSMUST00000108075.9	novel	0.00	0	10.0	0	8;12	n	0.00	0	7.5	0	8;7	n	0.00	0	26.0	0	26;26	n	0.00	0	20.0	0	25;15	n	0.00	0	34.0	0	39;29	n	0.00	0	9.5	0	10;9	n	0.00	0	24.0	0	26;22	n	0.00	0	29.5	0	31;28	n	0.00	0	9.5	0	15;4	n	0.00	0	21.0	0	18;24	n	0.19	3	12.5	3	11;14	y	0.00	0	30.5	0	42;19	n	ENSMUSG00000000804.15	Usp32	chr11	protein_coding	ubiquitin specific peptidase 32
novel_NIR_3688	chr11	85126158	85128237	+	85126158;85128073	85127966;85128237	ES	ENSMUST00000136454.2	novel	0.80	4	1.0	4	0;2	y	0.80	4	1.0	4	0;2	y	0.91	5	0.5	5	0;1	y	0.33	1	2.0	1	0;4	n	0.82	7	1.5	7	1;2	y	0.57	2	1.5	2	0;3	y	0.86	3	0.5	3	1;0	y	0.50	2	2.0	2	3;1	y	-	-	-	-	-	-	0.93	7	0.5	7	0;1	y	0.85	11	2.0	11	2;2	y	1.00	2	0.0	2	0;0	y	ENSMUSG00000085628.5	Appbp2os	chr11	lncRNA	amyloid beta precursor protein (cytoplasmic tail) binding protein 2, opposite strand
novel_NIR_3689	chr11	85202749	85217693	+	85202749	85217690	A3SS	ENSMUST00000020835.16	novel	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	23	0	23	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.33	2	4	2	4	y	0.00	0	15	0	15	n	0.00	0	16	0	16	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	ENSMUSG00000020525.18	Ppm1d	chr11	protein_coding	protein phosphatase 1D magnesium-dependent, delta isoform
novel_NIR_3690	chr11	85230622	85233437	+	85230622	85236462	A3SS	ENSMUST00000020835.16	novel	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.05	1	19	1	19	n	0.00	0	13	0	13	n	0.06	1	15	1	15	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.04	1	25	1	25	n	0.29	2	5	2	5	y	0.00	0	12	0	12	n	ENSMUSG00000020525.18	Ppm1d	chr11	protein_coding	protein phosphatase 1D magnesium-dependent, delta isoform
novel_NIR_3691	chr11	85386787	85392653	+	85386787	85387699	3pMXE	ENSMUST00000144276.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000059439.16	Bcas3	chr11	protein_coding	breast carcinoma amplified sequence 3
novel_NIR_3692	chr11	8565851	8592000	-	8565851	8574417	5pMXE	ENSMUST00000239091.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020422.15	Tns3	chr11	protein_coding	tensin 3
novel_NIR_3693	chr11	8565851	8592000	-	8565851	8614479	A5SS	ENSMUST00000020695.13	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000020422.15	Tns3	chr11	protein_coding	tensin 3
novel_NIR_3694	chr11	85692778;85694453	85694364;85716028	+	85692778;85704891	85704826;85716028	MXE	ENSMUST00000142596.8	novel	0.25	2.0	6.0	2;2	10;2	y	0.00	0.0	6.5	0;0	10;3	n	0.00	0.0	7.0	0;0	9;5	n	0.00	0.0	6.5	0;0	11;2	n	0.00	0.0	8.5	0;0	15;2	n	0.00	0.0	4.5	0;0	8;1	n	0.00	0.0	5.0	0;0	7;3	n	0.00	0.0	4.5	0;0	7;2	n	0.00	0.0	7.0	0;0	12;2	n	0.00	0.0	7.5	0;0	13;2	n	0.00	0.0	3.5	0;0	6;1	n	0.00	0.0	5.5	0;0	9;2	n	ENSMUSG00000059439.16	Bcas3	chr11	protein_coding	breast carcinoma amplified sequence 3
novel_NIR_3695	chr11	85704891	85712602	+	85704891	85712848	A3SS	ENSMUST00000108061.8	novel	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.20	2	8	2	8	y	0.00	0	6	0	6	n	0.50	1	1	1	1	n	0.20	3	12	3	12	y	0.33	1	2	1	2	n	0.20	1	4	1	4	n	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.29	2	5	2	5	y	ENSMUSG00000059439.16	Bcas3	chr11	protein_coding	breast carcinoma amplified sequence 3
novel_NIR_3696	chr11	85704891	85712602	+	85704891	85716028	A3SS	ENSMUST00000142596.8	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.50	3	3	3	3	y	0.33	1	2	1	2	n	0.33	1	2	1	2	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	ENSMUSG00000059439.16	Bcas3	chr11	protein_coding	breast carcinoma amplified sequence 3
novel_NIR_3697	chr11	85724327	85725468	+	85724327	85725446	A3SS	ENSMUST00000000095.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.21	3	11	3	11	y	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	ENSMUSG00000000093.7	Tbx2	chr11	protein_coding	T-box 2
novel_NIR_3698	chr11	85994805	85999593	-	85968795	85999593	A3SS	ENSMUST00000044423.4	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.29	2	5	2	5	y	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000034329.17	Brip1	chr11	protein_coding	BRCA1 interacting protein C-terminal helicase 1
novel_NIR_3699	chr11	86085993	86088695	-	86083814	86088695	A3SS	ENSMUST00000044423.4	novel	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.67	2	1	2	1	y	1.00	1	0	1	0	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.67	6	3	6	3	y	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000034329.17	Brip1	chr11	protein_coding	BRCA1 interacting protein C-terminal helicase 1
novel_NIR_3700	chr11	86085993	86088695	-	86085993;86087125	86087080;86088695	ES	ENSMUST00000149748.8	novel	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	0.00	0	1.0	0	0;2	n	-	-	-	-	-	-	0.50	2	2.0	2	4;0	y	1.00	1	0.0	1	0;0	n	1.00	1	0.0	1	0;0	n	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	1.00	6	0.0	6	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034329.17	Brip1	chr11	protein_coding	BRCA1 interacting protein C-terminal helicase 1
novel_NIR_3701	chr11	86085993	86088695	-	86086831	86088695	3pMXE	ENSMUST00000123366.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	6	0	6	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000034329.17	Brip1	chr11	protein_coding	BRCA1 interacting protein C-terminal helicase 1
novel_NIR_3702	chr11	86089820	86092307	-	86089820	86091900	5pMXE	ENSMUST00000149748.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034329.17	Brip1	chr11	protein_coding	BRCA1 interacting protein C-terminal helicase 1
novel_NIR_3703	chr11	86089820	86092307	-	86089820	86091935	5pMXE	ENSMUST00000044423.4	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.60	3	2	3	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034329.17	Brip1	chr11	protein_coding	BRCA1 interacting protein C-terminal helicase 1
novel_NIR_3704	chr11	86375625	86376894	+	86375625	86375777	A3SS&ES	ENSMUST00000131246.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020521.8	Rnft1	chr11	protein_coding	ring finger protein, transmembrane 1
novel_NIR_3705	chr11	86397007	86397617	-	86397327	86397617	A3SS&ES	ENSMUST00000149392.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000020516.16	Rps6kb1	chr11	protein_coding	ribosomal protein S6 kinase, polypeptide 1
novel_NIR_3706	chr11	86407017	86408059	-	86407017	86407570	A5SS&ES	ENSMUST00000020824.15	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.25	2	6	2	6	y	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.20	1	4	1	4	n	0.00	0	4	0	4	n	ENSMUSG00000020516.16	Rps6kb1	chr11	protein_coding	ribosomal protein S6 kinase, polypeptide 1
novel_NIR_3707	chr11	86407017	86408059	-	86407017	86407977	A5SS	ENSMUST00000131194.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000020516.16	Rps6kb1	chr11	protein_coding	ribosomal protein S6 kinase, polypeptide 1
novel_NIR_3708	chr11	86407017	86408176	-	86407017	86407570	A5SS&ES	ENSMUST00000020824.15	novel	0.00	0	3	0	3	n	0.60	3	2	3	2	y	0.50	6	6	6	6	y	0.00	0	6	0	6	n	0.60	3	2	3	2	y	0.50	1	1	1	1	n	0.60	3	2	3	2	y	0.33	1	2	1	2	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.43	3	4	3	4	y	0.00	0	4	0	4	n	ENSMUSG00000020516.16	Rps6kb1	chr11	protein_coding	ribosomal protein S6 kinase, polypeptide 1
novel_NIR_3709	chr11	86407017	86408176	-	86407017;86408075	86407977;86408176	ES	ENSMUST00000131194.2	novel	0.00	0	1.0	0	0;2	n	0.67	3	1.5	3	0;3	y	0.67	6	3.0	6	0;6	y	0.00	0	1.0	0	0;2	n	0.55	3	2.5	3	0;5	y	0.22	1	3.5	1	0;7	n	0.67	3	1.5	3	0;3	y	0.50	1	1.0	1	0;2	n	0.50	1	1.0	1	0;2	n	0.40	1	1.5	1	0;3	n	0.67	3	1.5	3	0;3	y	0.00	0	2.0	0	0;4	n	ENSMUSG00000020516.16	Rps6kb1	chr11	protein_coding	ribosomal protein S6 kinase, polypeptide 1
novel_NIR_3710	chr11	86477407	86477498	-	86476277	86477498	A3SS	ENSMUST00000150176.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000018171.10	Vmp1	chr11	protein_coding	vacuole membrane protein 1
novel_NIR_3711	chr11	86556704	86557637	-	86556704	86561918	A5SS	ENSMUST00000143991.3	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000018171.10	Vmp1	chr11	protein_coding	vacuole membrane protein 1
novel_NIR_3712	chr11	86556704	86574159	-	86556704	86561918	5pMXE	ENSMUST00000143991.3	novel	0.00	0	1	0	1	n	1.00	3	0	3	0	y	1.00	11	0	11	0	y	1.00	7	0	7	0	y	1.00	23	0	23	0	y	1.00	7	0	7	0	y	1.00	16	0	16	0	y	1.00	10	0	10	0	y	1.00	6	0	6	0	y	1.00	5	0	5	0	y	1.00	6	0	6	0	y	1.00	3	0	3	0	y	ENSMUSG00000018171.10	Vmp1	chr11	protein_coding	vacuole membrane protein 1
novel_NIR_3713	chr11	86556704	86574189	-	86556704	86561918	5pMXE	ENSMUST00000143991.3	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000018171.10	Vmp1	chr11	protein_coding	vacuole membrane protein 1
novel_NIR_3714	chr11	86556704	86574562	-	86556704	86561918	5pMXE	ENSMUST00000143991.3	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	9	0	9	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000018171.10	Vmp1	chr11	protein_coding	vacuole membrane protein 1
novel_NIR_3715	chr11	86578954	86580385	+	86574949	86580385	A5SS	ENSMUST00000108022.8	novel	0.00	0	42	0	42	n	0.00	0	46	0	46	n	0.18	13	58	13	58	y	0.07	3	43	3	43	n	0.05	3	54	3	54	n	0.06	3	46	3	46	n	0.06	6	87	6	87	n	0.11	5	41	5	41	n	0.03	1	39	1	39	n	0.00	0	48	0	48	n	0.03	1	38	1	38	n	0.00	0	47	0	47	n	ENSMUSG00000072582.10	Ptrh2	chr11	protein_coding	peptidyl-tRNA hydrolase 2
novel_NIR_3716	chr11	86578954	86580385	+	86578955	86580385	A5SS	ENSMUST00000108021.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	13	0	13	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	6	0	6	0	y	1.00	5	0	5	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000072582.10	Ptrh2	chr11	protein_coding	peptidyl-tRNA hydrolase 2
novel_NIR_3717	chr11	86676663	86688449	-	86676663	86680312	A5SS&ES	ENSMUST00000148263.3	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000018425.19	Dhx40	chr11	protein_coding	DEAH (Asp-Glu-Ala-His) box polypeptide 40
novel_NIR_3718	chr11	86853157	86862635	-	86836802	86862635	A3SS	ENSMUST00000018571.5	novel	0.00	0	14	0	14	n	0.00	0	15	0	15	n	0.00	0	32	0	32	n	0.00	0	27	0	27	n	0.00	0	22	0	22	n	0.00	0	13	0	13	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	18	0	18	n	0.10	2	19	2	19	n	0.00	0	6	0	6	n	0.18	4	18	4	18	y	ENSMUSG00000018427.9	Ypel2	chr11	protein_coding	yippee like 2
novel_NIR_3719	chr11	87000130	87008494	+	87000130;87007016	87006930;87008494	ES	ENSMUST00000020794.6	novel	0.00	0	3.5	0	2;5	n	0.00	0	1.0	0	1;1	n	0.21	2	7.5	2	7;8	y	0.00	0	9.5	0	8;11	n	0.00	0	12.0	0	9;15	n	0.00	0	2.0	0	3;1	n	0.00	0	8.0	0	6;10	n	0.00	0	3.0	0	2;4	n	0.00	0	0.5	0	0;1	n	0.00	0	5.0	0	4;6	n	0.00	0	2.5	0	0;5	n	0.00	0	3.5	0	3;4	n	ENSMUSG00000020492.12	Ska2	chr11	protein_coding	spindle and kinetochore associated complex subunit 2
novel_NIR_3720	chr11	87000130	87008494	+	87000130;87007016	87006971;87008494	ES	ENSMUST00000142263.8	novel	0.00	0	2.5	0	0;5	n	0.00	0	0.5	0	0;1	n	0.33	2	4.0	2	0;8	y	0.00	0	5.5	0	0;11	n	0.00	0	7.5	0	0;15	n	0.00	0	0.5	0	0;1	n	0.00	0	5.0	0	0;10	n	0.00	0	2.0	0	0;4	n	0.00	0	0.5	0	0;1	n	0.00	0	3.0	0	0;6	n	0.00	0	2.5	0	0;5	n	0.00	0	2.0	0	0;4	n	ENSMUSG00000020492.12	Ska2	chr11	protein_coding	spindle and kinetochore associated complex subunit 2
novel_NIR_3721	chr11	87000130	87008494	+	87007016	87008494	5pMXE	ENSMUST00000131202.2	novel	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.20	2	8	2	8	y	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	ENSMUSG00000020492.12	Ska2	chr11	protein_coding	spindle and kinetochore associated complex subunit 2
novel_NIR_3722	chr11	87592472	87594988	+	87592472	87595572	A3SS	ENSMUST00000137077.2	novel	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.00	0	15	0	15	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	ENSMUSG00000085972.2	1110028F11Rik	chr11	lncRNA	RIKEN cDNA 1110028F11 gene
novel_NIR_3723	chr11	87744672	87745639	+	87744672	87745804	A3SS	ENSMUST00000038196.7	novel	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000034121.13	Mks1	chr11	protein_coding	MKS transition zone complex subunit 1
novel_NIR_3724	chr11	87747484	87747634	+	87747486	87747634	A5SS	ENSMUST00000038196.7	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000034121.13	Mks1	chr11	protein_coding	MKS transition zone complex subunit 1
novel_NIR_3725	chr11	87750338	87750441	+	87749485	87750441	A5SS	ENSMUST00000038196.7	novel	0.00	0	2	0	2	n	0.50	3	3	3	3	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000034121.13	Mks1	chr11	protein_coding	MKS transition zone complex subunit 1
novel_NIR_3726	chr11	87874836	87874993	-	87874836	87877154	A5SS	ENSMUST00000107923.10	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.67	2	1	2	1	y	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000020483.15	Dynll2	chr11	protein_coding	dynein light chain LC8-type 2
novel_NIR_3727	chr11	87874836	87877741	-	87874836	87877154	5pMXE	ENSMUST00000107923.10	novel	0.00	0	3	0	3	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000020483.15	Dynll2	chr11	protein_coding	dynein light chain LC8-type 2
novel_NIR_3728	chr11	87969381	87970160	+	87969381	87972224	A3SS	ENSMUST00000018521.11	novel	0.00	0	10	0	10	n	0.39	7	11	7	11	y	0.08	2	24	2	24	n	0.00	0	28	0	28	n	0.21	4	15	4	15	y	0.00	0	14	0	14	n	0.11	3	25	3	25	n	0.00	0	15	0	15	n	0.11	1	8	1	8	n	0.00	0	19	0	19	n	0.00	0	15	0	15	n	0.06	1	17	1	17	n	ENSMUSG00000018377.11	Vezf1	chr11	protein_coding	vascular endothelial zinc finger 1
novel_NIR_3729	chr11	88235486	88239610	-	88235486;88237951	88237879;88239610	ES	ENSMUST00000107909.8	novel	0.31	5	11.0	5	7;15	y	0.09	1	10.0	1	9;11	n	0.37	12	20.5	12	17;24	y	0.46	6	7.0	6	7;7	y	0.19	5	21.0	5	20;22	y	0.09	1	10.0	1	5;15	n	0.48	10	11.0	10	11;11	y	0.25	3	9.0	3	7;11	y	0.25	4	12.0	4	14;10	y	0.40	9	13.5	9	15;12	y	0.50	9	9.0	9	7;11	y	0.51	12	11.5	12	10;13	y	ENSMUSG00000069769.14	Msi2	chr11	protein_coding	musashi RNA-binding protein 2
novel_NIR_3730	chr11	88611398	88613476	+	88611398;88611657	88611519;88613476	ES	ENSMUST00000125967.2	novel	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	0.00	0	1.0	0	2;0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1.0	0	2;0	n	0.00	0	1.0	0	1;1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	ENSMUSG00000087574.2	C030037D09Rik	chr11	lncRNA	RIKEN cDNA C030037D09 gene
novel_NIR_3731	chr11	88611398	88614905	+	88611398	88618367	A3SS	ENSMUST00000136201.2	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000087574.2	C030037D09Rik	chr11	lncRNA	RIKEN cDNA C030037D09 gene
novel_NIR_3732	chr11	88611398;88613524	88613476;88618367	+	88611398	88618367	cassetteExon	ENSMUST00000136201.2	novel	0.00	0.0	1	0;0	1	n	0.00	0.0	3	0;0	3	n	0.00	0.0	2	0;0	2	n	-	-	-	-	-	-	0.00	0.0	1	0;0	1	n	-	-	-	-	-	-	0.11	0.5	4	0;1	4	n	0.00	0.0	4	0;0	4	n	0.00	0.0	4	0;0	4	n	0.00	0.0	1	0;0	1	n	0.00	0.0	1	0;0	1	n	0.71	2.5	1	2;3	1	y	ENSMUSG00000087574.2	C030037D09Rik	chr11	lncRNA	RIKEN cDNA C030037D09 gene
novel_NIR_3733	chr11	88613524	88618367	+	88613524	88614905	3pMXE	ENSMUST00000125967.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000087574.2	C030037D09Rik	chr11	lncRNA	RIKEN cDNA C030037D09 gene
novel_NIR_3734	chr11	88736685	88754476	-	88736691	88754476	A3SS	ENSMUST00000107904.3	novel	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	16	0	16	n	0.00	0	27	0	27	n	0.00	0	5	0	5	n	0.00	0	19	0	19	n	0.00	0	10	0	10	n	0.00	0	22	0	22	n	0.00	0	30	0	30	n	0.00	0	13	0	13	n	0.20	2	8	2	8	y	ENSMUSG00000018428.16	Akap1	chr11	protein_coding	A kinase (PRKA) anchor protein 1
novel_NIR_3735	chr11	88736691	88738052	-	88736691	88742177	A5SS	ENSMUST00000107903.8	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000018428.16	Akap1	chr11	protein_coding	A kinase (PRKA) anchor protein 1
novel_NIR_3736	chr11	88736691	88738052	-	88736691	88754476	A5SS	ENSMUST00000107904.3	novel	0.00	0	13	0	13	n	0.25	3	9	3	9	y	0.20	1	4	1	4	n	0.11	2	16	2	16	n	0.04	1	27	1	27	n	0.00	0	5	0	5	n	0.17	4	19	4	19	y	0.00	0	10	0	10	n	0.00	0	22	0	22	n	0.00	0	30	0	30	n	0.07	1	13	1	13	n	0.00	0	8	0	8	n	ENSMUSG00000018428.16	Akap1	chr11	protein_coding	A kinase (PRKA) anchor protein 1
novel_NIR_3737	chr11	88736691	88740863	-	88736691	88742177	A5SS	ENSMUST00000107903.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000018428.16	Akap1	chr11	protein_coding	A kinase (PRKA) anchor protein 1
novel_NIR_3738	chr11	88736691	88744243	-	88736691	88742177	5pMXE	ENSMUST00000107903.8	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000018428.16	Akap1	chr11	protein_coding	A kinase (PRKA) anchor protein 1
novel_NIR_3739	chr11	88736691	88754008	-	88736691	88742177	5pMXE	ENSMUST00000107903.8	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000018428.16	Akap1	chr11	protein_coding	A kinase (PRKA) anchor protein 1
novel_NIR_3740	chr11	88736691	88754008	-	88736691	88754476	A5SS	ENSMUST00000107904.3	novel	0.19	3	13	3	13	y	0.00	0	9	0	9	n	0.20	1	4	1	4	n	0.00	0	16	0	16	n	0.13	4	27	4	27	n	0.00	0	5	0	5	n	0.10	2	19	2	19	n	0.00	0	10	0	10	n	0.04	1	22	1	22	n	0.03	1	30	1	30	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	ENSMUSG00000018428.16	Akap1	chr11	protein_coding	A kinase (PRKA) anchor protein 1
novel_NIR_3741	chr11	88736691	88754414	-	88736691	88742177	5pMXE	ENSMUST00000107903.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	6	0	6	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000018428.16	Akap1	chr11	protein_coding	A kinase (PRKA) anchor protein 1
novel_NIR_3742	chr11	88736691	88754414	-	88736691	88754476	A5SS	ENSMUST00000107904.3	novel	0.00	0	13	0	13	n	0.18	2	9	2	9	y	0.20	1	4	1	4	n	0.27	6	16	6	16	y	0.13	4	27	4	27	n	0.29	2	5	2	5	y	0.24	6	19	6	19	y	0.00	0	10	0	10	n	0.04	1	22	1	22	n	0.06	2	30	2	30	n	0.19	3	13	3	13	y	0.00	0	8	0	8	n	ENSMUSG00000018428.16	Akap1	chr11	protein_coding	A kinase (PRKA) anchor protein 1
novel_NIR_3743	chr11	88906016	88906545	+	88906016;88906457	88906359;88906545	ES	ENSMUST00000107896.10	novel	0.21	8	31.0	8	20;42	y	0.15	4	22.0	4	18;26	y	0.08	7	78.5	7	60;97	n	0.15	7	41.0	7	21;61	y	0.08	6	65.0	6	62;68	n	0.06	3	45.0	3	32;58	n	0.07	3	43.0	3	26;60	n	0.02	1	49.5	1	35;64	n	0.15	5	27.5	5	18;37	y	0.07	5	64.5	5	40;89	n	0.10	3	27.5	3	20;35	n	0.04	2	45.5	2	37;54	n	ENSMUSG00000000275.17	Trim25	chr11	protein_coding	tripartite motif-containing 25
novel_NIR_3744	chr11	88906016	88906545	+	88906457	88906545	A5SS&ES	ENSMUST00000000284.7	novel	0.16	8	42	8	42	y	0.13	4	26	4	26	n	0.07	7	97	7	97	n	0.10	7	61	7	61	n	0.08	6	68	6	68	n	0.05	3	58	3	58	n	0.05	3	60	3	60	n	0.02	1	64	1	64	n	0.12	5	37	5	37	n	0.05	5	89	5	89	n	0.08	3	35	3	35	n	0.04	2	54	2	54	n	ENSMUSG00000000275.17	Trim25	chr11	protein_coding	tripartite motif-containing 25
novel_NIR_3745	chr11	8957601	8960241	-	8957604	8960241	A3SS	ENSMUST00000129115.2	novel	0.00	0	5	0	5	n	0.14	1	6	1	6	n	0.57	4	3	4	3	y	0.57	4	3	4	3	y	0.29	2	5	2	5	y	0.00	0	2	0	2	n	0.43	3	4	3	4	y	0.75	3	1	3	1	y	0.00	0	4	0	4	n	0.33	5	10	5	10	y	0.00	0	3	0	3	n	0.56	5	4	5	4	y	ENSMUSG00000020413.12	Hus1	chr11	protein_coding	HUS1 checkpoint clamp component
novel_NIR_3746	chr11	90231803	90236584	-	90231800	90236584	A3SS	ENSMUST00000004051.8	novel	0.11	9	74	9	74	n	0.17	10	48	10	48	y	0.16	7	37	7	37	y	0.08	5	61	5	61	n	0.09	7	69	7	69	n	0.20	8	33	8	33	y	0.23	21	69	21	69	y	0.10	4	36	4	36	n	0.12	7	50	7	50	n	0.09	8	80	8	80	n	0.13	8	55	8	55	n	0.18	11	51	11	51	y	ENSMUSG00000003949.17	Hlf	chr11	protein_coding	hepatic leukemia factor
novel_NIR_3747	chr11	90236799	90278612	-	90261191	90278612	A3SS&ES	ENSMUST00000043658.12	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000003949.17	Hlf	chr11	protein_coding	hepatic leukemia factor
novel_NIR_3748	chr11	90483249	90491012	-	90483249;90485667	90485571;90491012	ES	ENSMUST00000143203.8	novel	0.00	0	1.5	0	1;2	n	0.00	0	2.0	0	2;2	n	0.40	2	3.0	2	3;3	y	0.00	0	4.0	0	8;0	n	0.00	0	4.5	0	3;6	n	0.00	0	1.5	0	3;0	n	0.00	0	0.5	0	0;1	n	0.00	0	2.5	0	2;3	n	0.00	0	2.5	0	1;4	n	0.00	0	3.0	0	4;2	n	0.00	0	2.0	0	3;1	n	0.00	0	3.0	0	1;5	n	ENSMUSG00000020546.15	Stxbp4	chr11	protein_coding	syntaxin binding protein 4
novel_NIR_3749	chr11	93799769	93801109	+	93799763	93801109	A5SS	ENSMUST00000107853.8	novel	0.14	1	6	1	6	n	0.50	1	1	1	1	n	0.15	2	11	2	11	y	0.08	1	11	1	11	n	0.43	3	4	3	4	y	0.00	0	8	0	8	n	0.53	8	7	8	7	y	0.00	0	7	0	7	n	0.50	4	4	4	4	y	0.15	3	17	3	17	y	0.00	0	8	0	8	n	0.00	0	13	0	13	n	ENSMUSG00000059474.14	Mbtd1	chr11	protein_coding	mbt domain containing 1
novel_NIR_3750	chr11	93824784	93830347	+	93824784	93834488	A3SS	ENSMUST00000063718.11	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.67	4	2	4	2	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.25	1	3	1	3	n	ENSMUSG00000059474.14	Mbtd1	chr11	protein_coding	mbt domain containing 1
novel_NIR_3751	chr11	93824784	93830347	+	93824784	93834601	A3SS	ENSMUST00000107853.8	novel	0.11	1	8	1	8	n	0.00	0	12	0	12	n	0.06	1	17	1	17	n	0.19	4	17	4	17	y	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.05	1	18	1	18	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.14	2	12	2	12	n	0.00	0	14	0	14	n	0.04	1	22	1	22	n	ENSMUSG00000059474.14	Mbtd1	chr11	protein_coding	mbt domain containing 1
novel_NIR_3752	chr11	93830538	93834601	+	93824784	93834601	A5SS	ENSMUST00000107853.8	novel	0.00	0	8	0	8	n	0.08	1	12	1	12	n	0.15	3	17	3	17	n	0.00	0	17	0	17	n	0.19	4	17	4	17	y	0.00	0	10	0	10	n	0.00	0	18	0	18	n	0.07	1	13	1	13	n	0.00	0	10	0	10	n	0.14	2	12	2	12	n	0.00	0	14	0	14	n	0.04	1	22	1	22	n	ENSMUSG00000059474.14	Mbtd1	chr11	protein_coding	mbt domain containing 1
novel_NIR_3753	chr11	93850339	93854053	-	93851661	93854053	3pMXE	ENSMUST00000107844.3	novel	0.17	1	5	1	5	n	0.33	2	4	2	4	y	0.00	0	5	0	5	n	0.43	3	4	3	4	y	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.17	1	5	1	5	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	ENSMUSG00000037601.12	Nme1	chr11	protein_coding	NME/NM23 nucleoside diphosphate kinase 1
novel_NIR_3754	chr11	93853875	93854053	-	93851661	93854053	A3SS	ENSMUST00000107844.3	novel	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.29	2	5	2	5	y	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	ENSMUSG00000037601.12	Nme1	chr11	protein_coding	NME/NM23 nucleoside diphosphate kinase 1
novel_NIR_3755	chr11	93915823	93927426	+	93887399	93927426	A5SS	ENSMUST00000132772.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020859.17	Spag9	chr11	protein_coding	sperm associated antigen 9
novel_NIR_3756	chr11	94174411	94175580	+	94174411	94175482	A3SS	ENSMUST00000208510.3	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000094091.4	Gm21885	chr11	protein_coding	predicted gene, 21885
novel_NIR_3757	chr11	94183853	94183964	-	94183881	94183964	A3SS	ENSMUST00000107822.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020863.16	Luc7l3	chr11	protein_coding	LUC7-like 3 (S. cerevisiae)
novel_NIR_3758	chr11	94435611	94437610	-	94435611	94438985	A5SS	ENSMUST00000040487.4	novel	0.10	1	9	1	9	n	0.14	2	12	2	12	n	0.10	3	27	3	27	n	0.10	2	19	2	19	n	0.00	0	28	0	28	n	0.08	1	11	1	11	n	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.15	2	11	2	11	y	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	ENSMUSG00000039096.11	Rsad1	chr11	protein_coding	radical S-adenosyl methionine domain containing 1
novel_NIR_3759	chr11	94435611	94437610	-	94435611	94439004	A5SS	ENSMUST00000148888.2	novel	0.33	1	2	1	2	n	1.00	2	0	2	0	y	0.33	3	6	3	6	y	0.33	2	4	2	4	y	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000039096.11	Rsad1	chr11	protein_coding	radical S-adenosyl methionine domain containing 1
novel_NIR_3760	chr11	94439430	94447572	-	94439430	94439805	5pMXE	ENSMUST00000132274.8	novel	0.83	10	2	10	2	y	1.00	7	0	7	0	y	0.90	19	2	19	2	y	0.71	5	2	5	2	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	16	0	16	0	y	1.00	7	0	7	0	y	1.00	4	0	4	0	y	1.00	9	0	9	0	y	1.00	2	0	2	0	y	0.33	1	2	1	2	n	ENSMUSG00000039096.11	Rsad1	chr11	protein_coding	radical S-adenosyl methionine domain containing 1
novel_NIR_3761	chr11	94439430	94447572	-	94439430	94439809	5pMXE	ENSMUST00000040487.4	novel	0.67	10	5	10	5	y	0.64	7	4	7	4	y	0.76	19	6	19	6	y	0.36	5	9	5	9	y	0.27	3	8	3	8	y	0.33	3	6	3	6	y	0.53	16	14	16	14	y	0.78	7	2	7	2	y	0.57	4	3	4	3	y	0.47	9	10	9	10	y	0.29	2	5	2	5	y	0.11	1	8	1	8	n	ENSMUSG00000039096.11	Rsad1	chr11	protein_coding	radical S-adenosyl methionine domain containing 1
novel_NIR_3762	chr11	94453744	94456302	-	94453744	94454544	5pMXE	ENSMUST00000131808.2	novel	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	8	0	8	0	y	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	4	0	4	0	y	1.00	6	0	6	0	y	1.00	3	0	3	0	y	1.00	5	0	5	0	y	1.00	2	0	2	0	y	ENSMUSG00000076435.4	Acsf2	chr11	protein_coding	acyl-CoA synthetase family member 2
novel_NIR_3763	chr11	94460858	94461163	-	94460858	94461440	A5SS	ENSMUST00000144615.2	novel	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.25	2	6	2	6	y	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000076435.4	Acsf2	chr11	protein_coding	acyl-CoA synthetase family member 2
novel_NIR_3764	chr11	94557357	94557839	-	94557357	94558410	A5SS	ENSMUST00000153485.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020868.16	Xylt2	chr11	protein_coding	xylosyltransferase II
novel_NIR_3765	chr11	94557357	94557839	-	94557357	94558887	A5SS	ENSMUST00000150377.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020868.16	Xylt2	chr11	protein_coding	xylosyltransferase II
novel_NIR_3766	chr11	94558668	94558887	-	94557357	94558887	A3SS	ENSMUST00000150377.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020868.16	Xylt2	chr11	protein_coding	xylosyltransferase II
novel_NIR_3767	chr11	94936589	94937303	-	94936589	94937275	A5SS	ENSMUST00000107739.8	novel	0.11	1	8	1	8	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.23	3	10	3	10	y	0.05	1	21	1	21	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.11	1	8	1	8	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.07	1	13	1	13	n	ENSMUSG00000001507.17	Itga3	chr11	protein_coding	integrin alpha 3
novel_NIR_3768	chr11	94936589	94937303	-	94936589	94937747	A5SS	ENSMUST00000120375.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000001507.17	Itga3	chr11	protein_coding	integrin alpha 3
novel_NIR_3769	chr11	95035805	95036022	-	95032805	95036022	A3SS	ENSMUST00000021241.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020871.9	Dlx4	chr11	protein_coding	distal-less homeobox 4
novel_NIR_3770	chr11	95035805	95036022	-	95035439	95036022	A3SS	ENSMUST00000146838.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020871.9	Dlx4	chr11	protein_coding	distal-less homeobox 4
novel_NIR_3771	chr11	95196970	95200861	-	95194135	95200861	A3SS	ENSMUST00000146365.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038909.17	Kat7	chr11	protein_coding	K(lysine) acetyltransferase 7
novel_NIR_3772	chr11	95196970	95200861	-	95196970	95200204	5pMXE	ENSMUST00000154327.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038909.17	Kat7	chr11	protein_coding	K(lysine) acetyltransferase 7
novel_NIR_3773	chr11	95196970	95200861	-	95197022	95200861	A3SS	ENSMUST00000103159.10	novel	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.19	3	13	3	13	y	0.00	0	25	0	25	n	0.00	0	23	0	23	n	0.00	0	12	0	12	n	0.00	0	20	0	20	n	0.00	0	14	0	14	n	0.00	0	18	0	18	n	0.00	0	14	0	14	n	0.00	0	14	0	14	n	0.00	0	23	0	23	n	ENSMUSG00000038909.17	Kat7	chr11	protein_coding	K(lysine) acetyltransferase 7
novel_NIR_3774	chr11	95276046	95276627	+	95275826	95276627	A5SS	ENSMUST00000146556.2	novel	0.33	1	2	1	2	n	-	-	-	-	-	-	0.62	5	3	5	3	y	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020873.16	Slc35b1	chr11	protein_coding	solute carrier family 35, member B1
novel_NIR_3775	chr11	95362170	95372740	+	95362170	95365132	3pMXE	ENSMUST00000127713.2	novel	0.00	0	6	0	6	n	1.00	3	0	3	0	y	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.17	1	5	1	5	n	0.18	2	9	2	9	y	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.00	0	16	0	16	n	ENSMUSG00000057522.16	Spop	chr11	protein_coding	speckle-type BTB/POZ protein
novel_NIR_3776	chr11	95716119	95719492	+	95644881	95719492	A5SS	ENSMUST00000133070.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	11	0	11	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000075595.10	Zfp652	chr11	protein_coding	zinc finger protein 652
novel_NIR_3777	chr11	95733252	95735877	+	95728197	95735877	A5SS	ENSMUST00000107712.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038811.14	Gngt2	chr11	protein_coding	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2
novel_NIR_3778	chr11	95733252	95735877	+	95733252	95734638	A3SS&ES	ENSMUST00000107711.8	novel	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.22	2	7	2	7	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	ENSMUSG00000038811.14	Gngt2	chr11	protein_coding	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2
novel_NIR_3779	chr11	95734721	95735882	+	95734721	95735858	A3SS	ENSMUST00000107711.8	novel	0.25	5	15	5	15	y	0.00	0	19	0	19	n	0.11	3	24	3	24	n	0.17	1	5	1	5	n	0.00	0	33	0	33	n	0.05	1	19	1	19	n	0.05	1	21	1	21	n	0.00	0	22	0	22	n	0.00	0	16	0	16	n	0.15	2	11	2	11	y	0.00	0	9	0	9	n	0.00	0	11	0	11	n	ENSMUSG00000038811.14	Gngt2	chr11	protein_coding	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2
novel_NIR_3780	chr11	95734721	95735882	+	95734721	95735877	A3SS	ENSMUST00000107714.9	novel	0.19	5	21	5	21	y	0.00	0	39	0	39	n	0.08	3	35	3	35	n	0.07	1	13	1	13	n	0.00	0	28	0	28	n	0.06	1	16	1	16	n	0.02	1	50	1	50	n	0.00	0	21	0	21	n	0.00	0	12	0	12	n	0.08	2	23	2	23	n	0.00	0	24	0	24	n	0.00	0	20	0	20	n	ENSMUSG00000038811.14	Gngt2	chr11	protein_coding	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2
novel_NIR_3781	chr11	95965859	95965992	-	95965859	95966253	A5SS	ENSMUST00000107686.8	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.25	3	9	3	9	y	0.00	0	7	0	7	n	0.07	1	13	1	13	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.60	3	2	3	2	y	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	ENSMUSG00000006057.16	Atp5g1	chr11	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9)
novel_NIR_3782	chr11	95965859	95966399	-	95965859	95966253	A5SS	ENSMUST00000107686.8	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.20	2	8	2	8	y	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	ENSMUSG00000006057.16	Atp5g1	chr11	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9)
novel_NIR_3783	chr11	96662517	96663608	-	96661950	96663608	A3SS	ENSMUST00000021246.9	novel	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.00	0	34	0	34	n	0.00	0	15	0	15	n	0.00	0	28	0	28	n	0.00	0	13	0	13	n	0.00	0	21	0	21	n	0.00	0	14	0	14	n	0.15	2	11	2	11	y	0.00	0	25	0	25	n	0.05	1	21	1	21	n	0.00	0	25	0	25	n	ENSMUSG00000020876.15	Snx11	chr11	protein_coding	sorting nexin 11
novel_NIR_3784	chr11	96665321	96667730	-	96665321	96666200	A5SS&ES	ENSMUST00000021246.9	novel	0.00	0	11	0	11	n	0.08	1	11	1	11	n	0.18	3	14	3	14	y	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.11	1	8	1	8	n	0.10	1	9	1	9	n	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	18	0	18	n	ENSMUSG00000020876.15	Snx11	chr11	protein_coding	sorting nexin 11
novel_NIR_3785	chr11	96665321	96667730	-	96665321	96667794	A5SS	ENSMUST00000107661.10	novel	0.00	0	12	0	12	n	0.14	1	6	1	6	n	0.15	3	17	3	17	y	0.00	0	9	0	9	n	0.00	0	19	0	19	n	0.07	1	13	1	13	n	0.06	1	15	1	15	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	ENSMUSG00000020876.15	Snx11	chr11	protein_coding	sorting nexin 11
novel_NIR_3786	chr11	96693648	96698629	+	96693648	96697442	A3SS&ES	ENSMUST00000093943.10	novel	0.11	7	56	7	56	n	0.10	5	45	5	45	n	0.08	5	56	5	56	n	0.08	5	59	5	59	n	0.04	3	81	3	81	n	0.08	3	35	3	35	n	0.07	6	74	6	74	n	0.02	1	40	1	40	n	0.07	4	52	4	52	n	0.15	12	70	12	70	y	0.09	5	52	5	52	n	0.04	3	67	3	67	n	ENSMUSG00000018666.14	Cbx1	chr11	protein_coding	chromobox 1
novel_NIR_3787	chr11	96693648	96698629	+	96693648	96699010	A3SS	ENSMUST00000079702.4	novel	0.78	7	2	7	2	y	1.00	5	0	5	0	y	1.00	5	0	5	0	y	1.00	5	0	5	0	y	1.00	3	0	3	0	y	0.60	3	2	3	2	y	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	12	0	12	0	y	1.00	5	0	5	0	y	1.00	3	0	3	0	y	ENSMUSG00000018666.14	Cbx1	chr11	protein_coding	chromobox 1
novel_NIR_3788	chr11	96697590	96698629	+	96697590	96699010	A3SS	ENSMUST00000093943.10	novel	0.64	9	5	9	5	y	0.95	18	1	18	1	y	0.40	4	6	4	6	y	0.89	16	2	16	2	y	0.85	23	4	23	4	y	0.88	14	2	14	2	y	0.73	19	7	19	7	y	0.75	6	2	6	2	y	0.94	16	1	16	1	y	0.88	30	4	30	4	y	0.91	20	2	20	2	y	0.86	24	4	24	4	y	ENSMUSG00000018666.14	Cbx1	chr11	protein_coding	chromobox 1
novel_NIR_3789	chr11	96708208	96710221	-	96708756	96710221	3pMXE	ENSMUST00000107659.8	novel	0.29	4	10	4	10	y	0.10	1	9	1	9	n	0.27	4	11	4	11	y	0.14	1	6	1	6	n	0.33	3	6	3	6	y	0.44	4	5	4	5	y	0.30	3	7	3	7	y	0.25	3	9	3	9	y	0.43	6	8	6	8	y	0.00	0	12	0	12	n	0.20	3	12	3	12	y	0.20	2	8	2	8	y	ENSMUSG00000038615.18	Nfe2l1	chr11	protein_coding	nuclear factor, erythroid derived 2,-like 1
novel_NIR_3790	chr11	96713145	96713463	-	96713145	96713235	A5SS	ENSMUST00000134951.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	3	3	3	3	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038615.18	Nfe2l1	chr11	protein_coding	nuclear factor, erythroid derived 2,-like 1
novel_NIR_3791	chr11	96713145	96713463	-	96713145	96714771	A5SS	ENSMUST00000167110.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000038615.18	Nfe2l1	chr11	protein_coding	nuclear factor, erythroid derived 2,-like 1
novel_NIR_3792	chr11	96713145	96713463	-	96713145	96714902	A5SS	ENSMUST00000169828.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038615.18	Nfe2l1	chr11	protein_coding	nuclear factor, erythroid derived 2,-like 1
novel_NIR_3793	chr11	96713145	96713463	-	96713145	96715122	A5SS	ENSMUST00000140138.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038615.18	Nfe2l1	chr11	protein_coding	nuclear factor, erythroid derived 2,-like 1
novel_NIR_3794	chr11	96719049	96722384	-	96719049	96720649	5pMXE	ENSMUST00000107657.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000038615.18	Nfe2l1	chr11	protein_coding	nuclear factor, erythroid derived 2,-like 1
novel_NIR_3795	chr11	96806603	96806977	-	96804703	96806977	A3SS	ENSMUST00000144731.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000018669.15	Cdk5rap3	chr11	protein_coding	CDK5 regulatory subunit associated protein 3
novel_NIR_3796	chr11	96829442	96830149	+	96815164	96830149	A5SS	ENSMUST00000131501.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000078700.11	D030028A08Rik	chr11	lncRNA	RIKEN cDNA D030028A08 gene
novel_NIR_3797	chr11	96830895	96830981	-	96830895	96833236	A5SS	ENSMUST00000107629.2	novel	0.00	0	14	0	14	n	0.33	3	6	3	6	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.11	1	8	1	8	n	0.60	3	2	3	2	y	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000018659.13	Pnpo	chr11	protein_coding	pyridoxine 5'-phosphate oxidase
novel_NIR_3798	chr11	96835277	96835671	+	96832608	96835671	A5SS	ENSMUST00000131501.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000078700.11	D030028A08Rik	chr11	lncRNA	RIKEN cDNA D030028A08 gene
novel_NIR_3799	chr11	96835277	96835671	+	96835040	96835671	A5SS	ENSMUST00000135825.9	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000078700.11	D030028A08Rik	chr11	lncRNA	RIKEN cDNA D030028A08 gene
novel_NIR_3800	chr11	96835277	96835671	+	96835176	96835671	A5SS	ENSMUST00000186326.2	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	6	0	6	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000078700.11	D030028A08Rik	chr11	lncRNA	RIKEN cDNA D030028A08 gene
novel_NIR_3801	chr11	96850539	96851687	+	96850441	96851687	A5SS	ENSMUST00000186326.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.60	3	2	3	2	y	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000078700.11	D030028A08Rik	chr11	lncRNA	RIKEN cDNA D030028A08 gene
novel_NIR_3802	chr11	96850539	96851687	+	96851107	96851687	A5SS	ENSMUST00000135825.9	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.10	1	9	1	9	n	0.00	0	5	0	5	n	0.75	3	1	3	1	y	0.00	0	1	0	1	n	0.33	1	2	1	2	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000078700.11	D030028A08Rik	chr11	lncRNA	RIKEN cDNA D030028A08 gene
novel_NIR_3803	chr11	96854267	96868447	-	96854267	96859414	5pMXE	ENSMUST00000107623.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	ENSMUSG00000018678.14	Sp2	chr11	protein_coding	Sp2 transcription factor
novel_NIR_3804	chr11	96854267	96868447	-	96854270	96868447	A3SS	ENSMUST00000107624.8	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.62	5	3	5	3	y	0.50	1	1	1	1	n	0.50	3	3	3	3	y	1.00	1	0	1	0	n	0.83	5	1	5	1	y	0.78	7	2	7	2	y	0.00	0	2	0	2	n	0.71	5	2	5	2	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	ENSMUSG00000018678.14	Sp2	chr11	protein_coding	Sp2 transcription factor
novel_NIR_3805	chr11	96947170	96947354	+	96947173	96947354	A5SS	ENSMUST00000090020.13	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000038534.20	Osbpl7	chr11	protein_coding	oxysterol binding protein-like 7
novel_NIR_3806	chr11	97030416	97031026	-	97030416	97033562	A5SS	ENSMUST00000107613.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038517.16	Tbkbp1	chr11	protein_coding	TBK1 binding protein 1
novel_NIR_3807	chr11	97030416	97031026	-	97030416	97037126	A5SS	ENSMUST00000066078.12	novel	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.25	1	3	1	3	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.29	2	5	2	5	y	-	-	-	-	-	-	0.20	1	4	1	4	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	ENSMUSG00000038517.16	Tbkbp1	chr11	protein_coding	TBK1 binding protein 1
novel_NIR_3808	chr11	97382056	97383874	+	97382056	97382470	A3SS&ES	ENSMUST00000142465.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000049807.17	Arhgap23	chr11	protein_coding	Rho GTPase activating protein 23
novel_NIR_3809	chr11	97382056	97383874	+	97382056	97383877	A3SS	ENSMUST00000121799.8	novel	0.25	2	6	2	6	y	0.00	0	9	0	9	n	0.14	3	19	3	19	n	0.00	0	3	0	3	n	0.07	1	13	1	13	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.11	1	8	1	8	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.09	2	20	2	20	n	ENSMUSG00000049807.17	Arhgap23	chr11	protein_coding	Rho GTPase activating protein 23
novel_NIR_3810	chr11	97498458	97505750	+	97489493	97505750	A5SS	ENSMUST00000131687.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000085860.2	2410003L11Rik	chr11	lncRNA	RIKEN cDNA 2410003L11 gene
novel_NIR_3811	chr11	97549856	97551024	-	97537347	97551024	A3SS	ENSMUST00000134427.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000085586.2	Gm11613	chr11	lncRNA	predicted gene 11613
novel_NIR_3812	chr11	97565708	97567208	+	97565708	97566965	A3SS&ES	ENSMUST00000044730.12	novel	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.00	0	28	0	28	n	0.14	2	12	2	12	n	0.00	0	19	0	19	n	0.15	2	11	2	11	y	0.00	0	9	0	9	n	0.00	0	23	0	23	n	0.14	2	12	2	12	n	0.00	0	12	0	12	n	ENSMUSG00000038437.12	Mllt6	chr11	protein_coding	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6
novel_NIR_3813	chr11	97568062	97569791	+	97568062	97569140	3pMXE	ENSMUST00000143220.2	novel	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.14	2	12	2	12	n	0.18	4	18	4	18	y	0.00	0	15	0	15	n	0.06	1	16	1	16	n	0.00	0	12	0	12	n	0.20	3	12	3	12	y	0.07	1	14	1	14	n	0.00	0	5	0	5	n	0.13	2	13	2	13	n	ENSMUSG00000038437.12	Mllt6	chr11	protein_coding	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6
novel_NIR_3814	chr11	97568062	97569791	+	97568062;97569489	97569140;97569791	ES	ENSMUST00000044730.12	novel	0.00	0	8.5	0	8;9	n	0.00	0	6.0	0	6;6	n	0.00	0	14.5	0	16;13	n	0.12	2	14.5	2	12;17	n	0.22	4	14.5	4	18;11	y	0.00	0	14.5	0	15;14	n	0.06	1	17.0	1	16;18	n	0.00	0	12.0	0	12;12	n	0.19	3	12.5	3	12;13	y	0.07	1	13.0	1	14;12	n	0.00	0	6.5	0	5;8	n	0.20	2	8.0	2	13;3	y	ENSMUSG00000038437.12	Mllt6	chr11	protein_coding	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6
novel_NIR_3815	chr11	97569489	97569799	+	97569489	97569791	A3SS	ENSMUST00000044730.12	novel	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.00	0	17	0	17	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.00	0	18	0	18	n	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.20	2	8	2	8	y	0.00	0	3	0	3	n	ENSMUSG00000038437.12	Mllt6	chr11	protein_coding	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6
novel_NIR_3816	chr11	97703211	97706524	+	97706190	97706524	5pMXE	ENSMUST00000155762.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	9	0	9	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	ENSMUSG00000038366.16	Lasp1	chr11	protein_coding	LIM and SH3 protein 1
novel_NIR_3817	chr11	97704857	97706524	+	97706190	97706524	5pMXE	ENSMUST00000155762.3	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038366.16	Lasp1	chr11	protein_coding	LIM and SH3 protein 1
novel_NIR_3818	chr11	97986019	97987777	-	97986019	97987755	A5SS	ENSMUST00000103143.10	novel	0.00	0	17	0	17	n	0.21	3	11	3	11	y	0.00	0	19	0	19	n	0.03	1	29	1	29	n	0.00	0	40	0	40	n	0.00	0	9	0	9	n	0.00	0	47	0	47	n	0.00	0	17	0	17	n	0.00	0	27	0	27	n	0.00	0	52	0	52	n	0.08	2	23	2	23	n	0.03	1	38	1	38	n	ENSMUSG00000020883.19	Fbxl20	chr11	protein_coding	F-box and leucine-rich repeat protein 20
novel_NIR_3819	chr11	98045075	98049155	-	98043789	98049155	A3SS	ENSMUST00000092735.12	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.80	4	1	4	1	y	0.00	0	7	0	7	n	0.00	0	3	0	3	n	ENSMUSG00000018160.16	Med1	chr11	protein_coding	mediator complex subunit 1
novel_NIR_3820	chr11	98045075	98049155	-	98043951	98049155	A3SS	ENSMUST00000126483.8	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.80	4	1	4	1	y	0.00	0	3	0	3	n	0.00	0	11	0	11	n	ENSMUSG00000018160.16	Med1	chr11	protein_coding	mediator complex subunit 1
novel_NIR_3821	chr11	98045075	98049155	-	98048960	98049155	3pMXE	ENSMUST00000147933.2	novel	0.00	0	2	0	2	n	0.00	0	7	0	7	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.67	4	2	4	2	y	0.00	0	4	0	4	n	0.00	0	1	0	1	n	ENSMUSG00000018160.16	Med1	chr11	protein_coding	mediator complex subunit 1
novel_NIR_3822	chr11	98045732	98049155	-	98043789	98049155	A3SS	ENSMUST00000092735.12	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.50	3	3	3	3	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	ENSMUSG00000018160.16	Med1	chr11	protein_coding	mediator complex subunit 1
novel_NIR_3823	chr11	98045732	98049155	-	98043951	98049155	A3SS	ENSMUST00000126483.8	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.43	3	4	3	4	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	ENSMUSG00000018160.16	Med1	chr11	protein_coding	mediator complex subunit 1
novel_NIR_3824	chr11	98045732	98049155	-	98048960	98049155	3pMXE	ENSMUST00000147933.2	novel	0.00	0	2	0	2	n	0.00	0	7	0	7	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	3	3	3	3	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	ENSMUSG00000018160.16	Med1	chr11	protein_coding	mediator complex subunit 1
novel_NIR_3825	chr11	98062596	98069938	-	98062596;98064118	98064047;98069938	ES	ENSMUST00000092735.12	novel	0.00	0	10.0	0	6;14	n	0.00	0	12.0	0	11;13	n	0.00	0	25.5	0	20;31	n	0.04	1	22.0	1	20;24	n	0.00	0	30.5	0	34;27	n	0.00	0	13.0	0	12;14	n	0.00	0	23.5	0	21;26	n	0.15	2	11.0	2	7;15	y	0.00	0	14.5	0	12;17	n	0.00	0	25.0	0	22;28	n	0.00	0	14.0	0	14;14	n	0.00	0	21.5	0	19;24	n	ENSMUSG00000018160.16	Med1	chr11	protein_coding	mediator complex subunit 1
novel_NIR_3826	chr11	98095236	98101190	+	98095236	98101187	A3SS	ENSMUST00000107539.8	novel	0.12	1	7	1	7	n	0.00	0	6	0	6	n	0.21	4	15	4	15	y	0.12	1	7	1	7	n	0.00	0	15	0	15	n	0.13	2	13	2	13	n	0.12	1	7	1	7	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.23	3	10	3	10	y	0.11	1	8	1	8	n	0.11	1	8	1	8	n	ENSMUSG00000003119.15	Cdk12	chr11	protein_coding	cyclin-dependent kinase 12
novel_NIR_3827	chr11	98115457	98121810	+	98115457;98120995	98120939;98121810	ES	ENSMUST00000107539.8	novel	0.04	1	22.0	1	25;19	n	0.00	0	12.5	0	11;14	n	0.03	1	34.5	1	43;26	n	0.13	2	13.5	2	14;13	n	0.00	0	25.5	0	29;22	n	0.00	0	13.5	0	17;10	n	0.00	0	24.5	0	24;25	n	0.00	0	22.0	0	25;19	n	0.00	0	12.5	0	11;14	n	0.10	2	19.0	2	18;20	n	0.16	3	15.5	3	12;19	y	0.00	0	22.0	0	21;23	n	ENSMUSG00000003119.15	Cdk12	chr11	protein_coding	cyclin-dependent kinase 12
novel_NIR_3828	chr11	98136495	98154296	+	98136495	98140509	3pMXE	ENSMUST00000107538.2	novel	0.50	3	3	3	3	y	0.29	2	5	2	5	y	0.50	5	5	5	5	y	0.83	5	1	5	1	y	0.10	1	9	1	9	n	-	-	-	-	-	-	0.55	6	5	6	5	y	0.43	3	4	3	4	y	0.25	1	3	1	3	n	0.08	1	12	1	12	n	0.33	2	4	2	4	y	0.33	1	2	1	2	n	ENSMUSG00000003119.15	Cdk12	chr11	protein_coding	cyclin-dependent kinase 12
novel_NIR_3829	chr11	98136495	98154296	+	98136495	98140536	3pMXE	ENSMUST00000107539.8	novel	0.43	3	4	3	4	y	0.33	2	4	2	4	y	0.38	5	8	5	8	y	0.50	5	5	5	5	y	0.08	1	11	1	11	n	0.00	0	5	0	5	n	0.55	6	5	6	5	y	0.38	3	5	3	5	y	0.25	1	3	1	3	n	0.12	1	7	1	7	n	0.29	2	5	2	5	y	0.11	1	8	1	8	n	ENSMUSG00000003119.15	Cdk12	chr11	protein_coding	cyclin-dependent kinase 12
novel_NIR_3830	chr11	98136495	98154296	+	98136495;98140926	98140536;98154296	ES	ENSMUST00000147441.8	novel	0.32	3	6.5	3	4;9	y	0.29	2	5.0	2	4;6	y	0.36	5	9.0	5	8;10	y	0.37	5	8.5	5	5;12	y	0.10	1	9.5	1	11;8	n	0.00	0	4.5	0	5;4	n	0.44	6	7.5	6	5;10	y	0.30	3	7.0	3	5;9	y	0.22	1	3.5	1	3;4	n	0.07	1	13.0	1	7;19	n	0.25	2	6.0	2	5;7	y	0.12	1	7.0	1	8;6	n	ENSMUSG00000003119.15	Cdk12	chr11	protein_coding	cyclin-dependent kinase 12
novel_NIR_3831	chr11	98136495	98154300	+	98136495	98140509	3pMXE	ENSMUST00000107538.2	novel	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.29	2	5	2	5	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000003119.15	Cdk12	chr11	protein_coding	cyclin-dependent kinase 12
novel_NIR_3832	chr11	98136495	98154300	+	98136495	98140536	3pMXE	ENSMUST00000107539.8	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.29	2	5	2	5	y	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	ENSMUSG00000003119.15	Cdk12	chr11	protein_coding	cyclin-dependent kinase 12
novel_NIR_3833	chr11	98155129	98158578	+	98155133	98158578	A5SS	ENSMUST00000147441.8	novel	0.00	0	18	0	18	n	0.07	1	14	1	14	n	0.27	4	11	4	11	y	0.00	0	15	0	15	n	0.00	0	18	0	18	n	0.11	1	8	1	8	n	0.00	0	15	0	15	n	0.17	2	10	2	10	y	0.00	0	7	0	7	n	0.08	1	12	1	12	n	0.00	0	14	0	14	n	0.08	2	23	2	23	n	ENSMUSG00000003119.15	Cdk12	chr11	protein_coding	cyclin-dependent kinase 12
novel_NIR_3834	chr11	98574064	98574389	-	98574064	98574207	5pMXE	ENSMUST00000122854.2	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000085955.2	Gm12356	chr11	lncRNA	predicted gene 12356
novel_NIR_3835	chr11	98692853	98695634	-	98692853	98700502	A5SS	ENSMUST00000153181.8	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	ENSMUSG00000075576.13	Gm12359	chr11	lncRNA	predicted gene 12359
novel_NIR_3836	chr11	98737115	98737907	+	98737115	98737902	A3SS	ENSMUST00000107479.3	novel	0.67	2	1	2	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000038020.6	Rapgefl1	chr11	protein_coding	Rap guanine nucleotide exchange factor (GEF)-like 1
novel_NIR_3837	chr11	98851959	98855979	+	98851959	98857173	A3SS	ENSMUST00000107473.3	novel	0.00	0	19	0	19	n	0.04	1	24	1	24	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.04	1	27	1	27	n	0.00	0	9	0	9	n	0.00	0	28	0	28	n	0.18	2	9	2	9	y	0.00	0	32	0	32	n	0.00	0	30	0	30	n	0.00	0	12	0	12	n	0.00	0	19	0	19	n	ENSMUSG00000037992.17	Rara	chr11	protein_coding	retinoic acid receptor, alpha
novel_NIR_3838	chr11	98856062	98857173	+	98841621	98857173	A5SS	ENSMUST00000107474.8	novel	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	25	0	25	n	0.08	1	11	1	11	n	0.00	0	18	0	18	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.00	0	21	0	21	n	0.22	2	7	2	7	y	0.00	0	18	0	18	n	ENSMUSG00000037992.17	Rara	chr11	protein_coding	retinoic acid receptor, alpha
novel_NIR_3839	chr11	98932676	98939052	+	98933328	98939052	5pMXE	ENSMUST00000177105.2	novel	0.86	6	1	6	1	y	0.50	1	1	1	1	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.10	1	9	1	9	n	0.00	0	5	0	5	n	0.50	3	3	3	3	y	0.14	1	6	1	6	n	0.33	3	6	3	6	y	-	-	-	-	-	-	ENSMUSG00000017493.13	Igfbp4	chr11	protein_coding	insulin-like growth factor binding protein 4
novel_NIR_3840	chr11	98932676	98939052	+	98935738	98939052	5pMXE	ENSMUST00000123946.2	novel	0.55	6	5	6	5	y	0.50	1	1	1	1	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.60	3	2	3	2	y	0.20	1	4	1	4	n	0.27	3	8	3	8	y	0.00	0	6	0	6	n	ENSMUSG00000017493.13	Igfbp4	chr11	protein_coding	insulin-like growth factor binding protein 4
novel_NIR_3841	chr11	98932676	98939052	+	98938229	98939052	5pMXE	ENSMUST00000140772.2	novel	0.60	6	4	6	4	y	0.33	1	2	1	2	n	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.00	0	6	0	6	n	0.27	3	8	3	8	y	0.07	1	14	1	14	n	0.20	3	12	3	12	y	0.00	0	4	0	4	n	ENSMUSG00000017493.13	Igfbp4	chr11	protein_coding	insulin-like growth factor binding protein 4
novel_NIR_3842	chr11	98932954	98939052	+	98933328	98939052	5pMXE	ENSMUST00000177105.2	novel	0.90	9	1	9	1	y	0.86	6	1	6	1	y	0.50	9	9	9	9	y	0.67	4	2	4	2	y	0.48	10	11	10	11	y	0.00	0	5	0	5	n	0.25	3	9	3	9	y	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.50	6	6	6	6	y	0.45	5	6	5	6	y	-	-	-	-	-	-	ENSMUSG00000017493.13	Igfbp4	chr11	protein_coding	insulin-like growth factor binding protein 4
novel_NIR_3843	chr11	98932954	98939052	+	98934450	98939052	5pMXE	ENSMUST00000130530.8	novel	0.12	9	63	9	63	n	0.11	6	49	6	49	n	0.15	9	51	9	51	y	0.06	4	64	4	64	n	0.10	10	91	10	91	n	0.00	0	28	0	28	n	0.04	3	71	3	71	n	0.00	0	33	0	33	n	0.00	0	42	0	42	n	0.10	6	54	6	54	n	0.09	5	53	5	53	n	0.00	0	83	0	83	n	ENSMUSG00000017493.13	Igfbp4	chr11	protein_coding	insulin-like growth factor binding protein 4
novel_NIR_3844	chr11	98932954	98939052	+	98935738	98939052	5pMXE	ENSMUST00000123946.2	novel	0.64	9	5	9	5	y	0.86	6	1	6	1	y	0.64	9	5	9	5	y	1.00	4	0	4	0	y	0.67	10	5	10	5	y	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.60	6	4	6	4	y	0.38	5	8	5	8	y	0.00	0	6	0	6	n	ENSMUSG00000017493.13	Igfbp4	chr11	protein_coding	insulin-like growth factor binding protein 4
novel_NIR_3845	chr11	98932954	98939052	+	98938229	98939052	5pMXE	ENSMUST00000140772.2	novel	0.69	9	4	9	4	y	0.75	6	2	6	2	y	0.39	9	14	9	14	y	0.44	4	5	4	5	y	0.59	10	7	10	7	y	0.00	0	4	0	4	n	0.43	3	4	3	4	y	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.30	6	14	6	14	y	0.29	5	12	5	12	y	0.00	0	4	0	4	n	ENSMUSG00000017493.13	Igfbp4	chr11	protein_coding	insulin-like growth factor binding protein 4
novel_NIR_3846	chr11	98933414	98939052	+	98933328	98939052	A5SS	ENSMUST00000177105.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.18	2	9	2	9	y	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	-	-	-	-	-	-	ENSMUSG00000017493.13	Igfbp4	chr11	protein_coding	insulin-like growth factor binding protein 4
novel_NIR_3847	chr11	98933414	98939052	+	98935738	98939052	5pMXE	ENSMUST00000123946.2	novel	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	ENSMUSG00000017493.13	Igfbp4	chr11	protein_coding	insulin-like growth factor binding protein 4
novel_NIR_3848	chr11	98933414	98939052	+	98938229	98939052	5pMXE	ENSMUST00000140772.2	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.33	2	4	2	4	y	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	ENSMUSG00000017493.13	Igfbp4	chr11	protein_coding	insulin-like growth factor binding protein 4
novel_NIR_3849	chr11	98933490	98939052	+	98933328	98939052	A5SS	ENSMUST00000177105.2	novel	0.50	1	1	1	1	n	0.86	6	1	6	1	y	0.00	0	9	0	9	n	0.71	5	2	5	2	y	0.62	18	11	18	11	y	0.00	0	5	0	5	n	0.36	5	9	5	9	y	0.50	5	5	5	5	y	0.79	11	3	11	3	y	0.70	14	6	14	6	y	0.54	7	6	7	6	y	1.00	11	0	11	0	y	ENSMUSG00000017493.13	Igfbp4	chr11	protein_coding	insulin-like growth factor binding protein 4
novel_NIR_3850	chr11	98933490	98939052	+	98934450	98939052	5pMXE	ENSMUST00000130530.8	novel	0.02	1	63	1	63	n	0.11	6	49	6	49	n	0.00	0	51	0	51	n	0.07	5	64	5	64	n	0.17	18	91	18	91	y	0.00	0	28	0	28	n	0.07	5	71	5	71	n	0.13	5	33	5	33	n	0.21	11	42	11	42	y	0.21	14	54	14	54	y	0.12	7	53	7	53	n	0.12	11	83	11	83	n	ENSMUSG00000017493.13	Igfbp4	chr11	protein_coding	insulin-like growth factor binding protein 4
novel_NIR_3851	chr11	98933490	98939052	+	98935738	98939052	5pMXE	ENSMUST00000123946.2	novel	0.17	1	5	1	5	n	0.86	6	1	6	1	y	0.00	0	5	0	5	n	1.00	5	0	5	0	y	0.78	18	5	18	5	y	-	-	-	-	-	-	1.00	5	0	5	0	y	0.71	5	2	5	2	y	0.85	11	2	11	2	y	0.78	14	4	14	4	y	0.47	7	8	7	8	y	0.65	11	6	11	6	y	ENSMUSG00000017493.13	Igfbp4	chr11	protein_coding	insulin-like growth factor binding protein 4
novel_NIR_3852	chr11	98933490	98939052	+	98938229	98939052	5pMXE	ENSMUST00000140772.2	novel	0.20	1	4	1	4	n	0.75	6	2	6	2	y	0.00	0	14	0	14	n	0.50	5	5	5	5	y	0.72	18	7	18	7	y	0.00	0	4	0	4	n	0.56	5	4	5	4	y	0.45	5	6	5	6	y	0.58	11	8	11	8	y	0.50	14	14	14	14	y	0.37	7	12	7	12	y	0.73	11	4	11	4	y	ENSMUSG00000017493.13	Igfbp4	chr11	protein_coding	insulin-like growth factor binding protein 4
novel_NIR_3853	chr11	98938240	98939052	+	98933328	98939052	A5SS	ENSMUST00000177105.2	novel	0.80	4	1	4	1	y	0.86	6	1	6	1	y	0.53	10	9	10	9	y	0.00	0	2	0	2	n	0.39	7	11	7	11	y	0.55	6	5	6	5	y	0.50	9	9	9	9	y	0.00	0	5	0	5	n	0.62	5	3	5	3	y	0.14	1	6	1	6	n	0.00	0	6	0	6	n	1.00	11	0	11	0	y	ENSMUSG00000017493.13	Igfbp4	chr11	protein_coding	insulin-like growth factor binding protein 4
novel_NIR_3854	chr11	98938240	98939052	+	98934450	98939052	A5SS	ENSMUST00000130530.8	novel	0.06	4	63	4	63	n	0.11	6	49	6	49	n	0.16	10	51	10	51	y	0.00	0	64	0	64	n	0.07	7	91	7	91	n	0.18	6	28	6	28	y	0.11	9	71	9	71	n	0.00	0	33	0	33	n	0.11	5	42	5	42	n	0.02	1	54	1	54	n	0.00	0	53	0	53	n	0.12	11	83	11	83	n	ENSMUSG00000017493.13	Igfbp4	chr11	protein_coding	insulin-like growth factor binding protein 4
novel_NIR_3855	chr11	98938240	98939052	+	98935738	98939052	A5SS	ENSMUST00000123946.2	novel	0.44	4	5	4	5	y	0.86	6	1	6	1	y	0.67	10	5	10	5	y	-	-	-	-	-	-	0.58	7	5	7	5	y	1.00	6	0	6	0	y	1.00	9	0	9	0	y	0.00	0	2	0	2	n	0.71	5	2	5	2	y	0.20	1	4	1	4	n	0.00	0	8	0	8	n	0.65	11	6	11	6	y	ENSMUSG00000017493.13	Igfbp4	chr11	protein_coding	insulin-like growth factor binding protein 4
novel_NIR_3856	chr11	98938240	98939052	+	98938229	98939052	A5SS	ENSMUST00000140772.2	novel	0.50	4	4	4	4	y	0.75	6	2	6	2	y	0.42	10	14	10	14	y	0.00	0	5	0	5	n	0.50	7	7	7	7	y	0.60	6	4	6	4	y	0.69	9	4	9	4	y	0.00	0	6	0	6	n	0.38	5	8	5	8	y	0.07	1	14	1	14	n	0.00	0	12	0	12	n	0.73	11	4	11	4	y	ENSMUSG00000017493.13	Igfbp4	chr11	protein_coding	insulin-like growth factor binding protein 4
novel_NIR_3857	chr11	98938421	98939052	+	98933328	98939052	A5SS	ENSMUST00000177105.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.47	8	9	8	9	y	0.50	2	2	2	2	y	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.31	4	9	4	9	y	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	1.00	1	0	1	0	n	ENSMUSG00000017493.13	Igfbp4	chr11	protein_coding	insulin-like growth factor binding protein 4
novel_NIR_3858	chr11	98938421	98939052	+	98935738	98939052	A5SS	ENSMUST00000123946.2	novel	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.62	8	5	8	5	y	1.00	2	0	2	0	y	0.00	0	5	0	5	n	-	-	-	-	-	-	1.00	4	0	4	0	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.14	1	6	1	6	n	ENSMUSG00000017493.13	Igfbp4	chr11	protein_coding	insulin-like growth factor binding protein 4
novel_NIR_3859	chr11	98938421	98939052	+	98938229	98939052	A5SS	ENSMUST00000140772.2	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.36	8	14	8	14	y	0.29	2	5	2	5	y	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.50	4	4	4	4	y	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.20	1	4	1	4	n	ENSMUSG00000017493.13	Igfbp4	chr11	protein_coding	insulin-like growth factor binding protein 4
novel_NIR_3860	chr11	98938438	98939052	+	98933328	98939052	A5SS	ENSMUST00000177105.2	novel	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	9	0	9	n	0.67	4	2	4	2	y	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.45	5	6	5	6	y	0.25	2	6	2	6	y	-	-	-	-	-	-	ENSMUSG00000017493.13	Igfbp4	chr11	protein_coding	insulin-like growth factor binding protein 4
novel_NIR_3861	chr11	98938438	98939052	+	98935738	98939052	A5SS	ENSMUST00000123946.2	novel	0.00	0	5	0	5	n	0.50	1	1	1	1	n	0.00	0	5	0	5	n	1.00	4	0	4	0	y	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.56	5	4	5	4	y	0.20	2	8	2	8	y	0.00	0	6	0	6	n	ENSMUSG00000017493.13	Igfbp4	chr11	protein_coding	insulin-like growth factor binding protein 4
novel_NIR_3862	chr11	98938438	98939052	+	98938229	98939052	A5SS	ENSMUST00000140772.2	novel	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.00	0	14	0	14	n	0.44	4	5	4	5	y	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.26	5	14	5	14	y	0.14	2	12	2	12	n	0.00	0	4	0	4	n	ENSMUSG00000017493.13	Igfbp4	chr11	protein_coding	insulin-like growth factor binding protein 4
novel_NIR_3863	chr11	98939197	98939303	+	98939197	98942271	A3SS	ENSMUST00000177092.8	novel	0.00	0	1	0	1	n	0.50	2	2	2	2	y	1.00	3	0	3	0	y	0.33	1	2	1	2	n	0.50	1	1	1	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	4	0	4	0	y	0.00	0	4	0	4	n	0.75	3	1	3	1	y	0.00	0	2	0	2	n	ENSMUSG00000017493.13	Igfbp4	chr11	protein_coding	insulin-like growth factor binding protein 4
novel_NIR_3864	chr11	98939197	98939926	+	98939197	98942271	A3SS	ENSMUST00000177092.8	novel	0.90	9	1	9	1	y	0.95	36	2	36	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.82	9	2	9	2	y	1.00	43	0	43	0	y	0.00	0	1	0	1	n	1.00	6	0	6	0	y	0.93	54	4	54	4	y	0.97	31	1	31	1	y	0.96	48	2	48	2	y	ENSMUSG00000017493.13	Igfbp4	chr11	protein_coding	insulin-like growth factor binding protein 4
novel_NIR_3865	chr11	99119374	99120865	-	99119374	99120999	A5SS	ENSMUST00000128707.8	novel	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037935.17	Smarce1	chr11	protein_coding	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
novel_NIR_3866	chr11	99277596	99278387	+	99278245	99278387	5pMXE	ENSMUST00000153599.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000087692.2	Gm11940	chr11	lncRNA	predicted gene 11940
novel_NIR_3867	chr12	100076642	100078590	+	100076762	100078590	A5SS	ENSMUST00000223078.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.50	2	2	2	2	y	-	-	-	-	-	-	ENSMUSG00000021178.10	Psmc1	chr12	protein_coding	protease (prosome, macropain) 26S subunit, ATPase 1
novel_NIR_3868	chr12	100076784	100078590	+	100076762	100078590	A5SS	ENSMUST00000223078.2	novel	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.11	1	8	1	8	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000021178.10	Psmc1	chr12	protein_coding	protease (prosome, macropain) 26S subunit, ATPase 1
novel_NIR_3869	chr12	100077255	100078590	+	100076762	100078590	A5SS	ENSMUST00000223078.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.60	3	2	3	2	y	-	-	-	-	-	-	0.11	1	8	1	8	n	0.60	3	2	3	2	y	0.33	1	2	1	2	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000021178.10	Psmc1	chr12	protein_coding	protease (prosome, macropain) 26S subunit, ATPase 1
novel_NIR_3870	chr12	100117593	100122227	-	100117593	100125799	A5SS	ENSMUST00000021596.9	novel	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.05	1	19	1	19	n	0.00	0	11	0	11	n	0.20	2	8	2	8	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.29	2	5	2	5	y	0.00	0	12	0	12	n	ENSMUSG00000021179.9	Nrde2	chr12	protein_coding	nrde-2 necessary for RNA interference, domain containing
novel_NIR_3871	chr12	100166782	100168652	+	100166564	100168652	A5SS	ENSMUST00000001204.8	novel	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000001175.17	Calm1	chr12	protein_coding	calmodulin 1
novel_NIR_3872	chr12	100385829	100432439	-	100385829;100413240	100413119;100432439	ES	ENSMUST00000062957.8	novel	0.00	0	23.5	0	24;23	n	0.00	0	12.0	0	14;10	n	0.00	0	22.5	0	28;17	n	0.00	0	27.0	0	34;20	n	0.00	0	30.0	0	38;22	n	0.00	0	8.0	0	9;7	n	0.17	4	20.0	4	23;17	y	0.00	0	19.5	0	12;27	n	0.10	1	9.5	1	5;14	n	0.00	0	29.0	0	40;18	n	0.00	0	19.0	0	15;23	n	0.05	1	20.5	1	24;17	n	ENSMUSG00000033530.9	Ttc7b	chr12	protein_coding	tetratricopeptide repeat domain 7B
novel_NIR_3873	chr12	100461695	100466335	-	100461699	100466335	A3SS	ENSMUST00000062957.8	novel	0.00	0	18	0	18	n	0.00	0	12	0	12	n	0.00	0	24	0	24	n	0.00	0	30	0	30	n	0.00	0	27	0	27	n	0.00	0	11	0	11	n	0.03	1	28	1	28	n	0.13	2	13	2	13	n	0.00	0	16	0	16	n	0.00	0	33	0	33	n	0.21	4	15	4	15	y	0.00	0	21	0	21	n	ENSMUSG00000033530.9	Ttc7b	chr12	protein_coding	tetratricopeptide repeat domain 7B
novel_NIR_3874	chr12	100833514	100837567	+	100833514	100861720	A3SS	ENSMUST00000110070.8	novel	1.00	2	0	2	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	3	0	3	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	8	0	8	0	n	0.00	0	1	0	1	n	1.00	4	0	4	0	y	ENSMUSG00000021185.17	Dglucy	chr12	protein_coding	D-glutamate cyclase
novel_NIR_3875	chr12	100833514;100837765	100837567;100861720	+	100833514	100861720	cassetteExon	ENSMUST00000110070.8	novel	1.00	1.0	0	2;0	0	n	1.00	2.0	0	4;0	0	n	-	-	-	-	-	-	1.00	2.0	0	3;1	0	n	1.00	0.5	0	0;1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5.0	0	8;2	0	y	0.00	0.0	1	0;0	1	n	1.00	2.0	0	4;0	0	n	ENSMUSG00000021185.17	Dglucy	chr12	protein_coding	D-glutamate cyclase
novel_NIR_3876	chr12	100837765	100861720	+	100837765	100841506	3pMXE	ENSMUST00000124957.2	novel	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.17	1	5	1	5	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000021185.17	Dglucy	chr12	protein_coding	D-glutamate cyclase
novel_NIR_3877	chr12	101008310	101008687	-	101008310	101008738	A5SS	ENSMUST00000223459.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000041846.16	Ppp4r3a	chr12	protein_coding	protein phosphatase 4 regulatory subunit 3A
novel_NIR_3878	chr12	101644889	101648673	-	101644889	101655219	A5SS	ENSMUST00000162735.8	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000021187.15	Tc2n	chr12	protein_coding	tandem C2 domains, nuclear
novel_NIR_3879	chr12	101659465	101672642	-	101659465;101660932	101660765;101672642	ES	ENSMUST00000162735.8	novel	0.00	0	1.0	0	1;1	n	0.80	2	0.5	2	1;0	y	0.00	0	1.5	0	1;2	n	0.00	0	2.0	0	0;4	n	0.00	0	2.5	0	2;3	n	0.00	0	1.5	0	1;2	n	0.00	0	1.5	0	3;0	n	0.00	0	2.0	0	3;1	n	-	-	-	-	-	-	0.00	0	1.0	0	0;2	n	0.00	0	1.5	0	0;3	n	0.00	0	2.0	0	2;2	n	ENSMUSG00000021187.15	Tc2n	chr12	protein_coding	tandem C2 domains, nuclear
novel_NIR_3880	chr12	101845137	101849515	-	101845151	101849515	A3SS	ENSMUST00000177480.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.60	3	2	3	2	y	0.00	0	1	0	1	n	0.78	7	2	7	2	y	-	-	-	-	-	-	0.31	4	9	4	9	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021188.15	Trip11	chr12	protein_coding	thyroid hormone receptor interactor 11
novel_NIR_3881	chr12	101845137	101849515	-	101845188	101849515	A3SS	ENSMUST00000021605.14	novel	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.10	3	27	3	27	n	0.00	0	17	0	17	n	0.19	7	29	7	29	y	0.00	0	19	0	19	n	0.15	4	22	4	22	y	0.00	0	22	0	22	n	0.00	0	14	0	14	n	0.00	0	20	0	20	n	0.00	0	14	0	14	n	0.00	0	22	0	22	n	ENSMUSG00000021188.15	Trip11	chr12	protein_coding	thyroid hormone receptor interactor 11
novel_NIR_3882	chr12	101880236	101880854	+	101879601	101880854	A5SS	ENSMUST00000177547.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000093579.2	Gm20036	chr12	lncRNA	predicted gene, 20036
novel_NIR_3883	chr12	102545431;102546665	102546540;102550546	-	102545431	102550546	cassetteExon	ENSMUST00000046518.12	novel	0.17	9.0	43	11;7	43	y	0.10	4.5	42	4;5	42	n	0.07	2.5	34	5;0	34	n	0.10	4.5	40	3;6	40	n	0.10	7.0	60	7;7	60	n	0.02	0.5	21	1;0	21	n	0.11	7.0	54	8;6	54	n	0.12	4.0	30	3;5	30	n	0.08	3.5	41	5;2	41	n	0.09	6.5	65	8;5	65	n	0.14	6.0	38	7;5	38	n	0.12	5.0	37	7;3	37	n	ENSMUSG00000057963.10	Itpk1	chr12	protein_coding	inositol 1,3,4-triphosphate 5/6 kinase
novel_NIR_3884	chr12	102598055	102641702	-	102641223	102641702	A3SS&ES	ENSMUST00000178697.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000057963.10	Itpk1	chr12	protein_coding	inositol 1,3,4-triphosphate 5/6 kinase
novel_NIR_3885	chr12	102641726	102648870	-	102641726	102661970	A5SS	ENSMUST00000179210.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	ENSMUSG00000057963.10	Itpk1	chr12	protein_coding	inositol 1,3,4-triphosphate 5/6 kinase
novel_NIR_3886	chr12	102641726	102648870	-	102641726	102686311	A5SS	ENSMUST00000178129.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000096751.4	Gm28373	chr12	lncRNA	predicted gene 28373
novel_NIR_3887	chr12	102641726	102648874	-	102641726	102661970	A5SS	ENSMUST00000179210.2	novel	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	ENSMUSG00000057963.10	Itpk1	chr12	protein_coding	inositol 1,3,4-triphosphate 5/6 kinase
novel_NIR_3888	chr12	102641726	102648874	-	102641726	102686311	A5SS	ENSMUST00000178129.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000096751.4	Gm28373	chr12	lncRNA	predicted gene 28373
novel_NIR_3889	chr12	102641726	102661774	-	102641726	102661970	A5SS	ENSMUST00000179210.2	novel	0.33	1	2	1	2	n	1.00	5	0	5	0	y	0.85	11	2	11	2	y	1.00	3	0	3	0	y	1.00	5	0	5	0	y	0.50	5	5	5	5	y	0.75	3	1	3	1	y	0.88	7	1	7	1	y	1.00	6	0	6	0	y	1.00	5	0	5	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000057963.10	Itpk1	chr12	protein_coding	inositol 1,3,4-triphosphate 5/6 kinase
novel_NIR_3890	chr12	102641726	102661774	-	102641726	102670981	A5SS	ENSMUST00000046518.12	novel	0.05	1	19	1	19	n	0.33	5	10	5	10	y	0.44	11	14	11	14	y	0.10	3	28	3	28	n	0.15	5	28	5	28	y	0.38	5	8	5	8	y	0.17	3	15	3	15	y	0.41	7	10	7	10	y	0.16	6	31	6	31	y	0.14	5	31	5	31	n	0.00	0	24	0	24	n	0.00	0	30	0	30	n	ENSMUSG00000057963.10	Itpk1	chr12	protein_coding	inositol 1,3,4-triphosphate 5/6 kinase
novel_NIR_3891	chr12	102641726	102661774	-	102641726	102686311	A5SS	ENSMUST00000178129.2	novel	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	11	0	11	0	y	1.00	3	0	3	0	y	1.00	5	0	5	0	y	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	7	0	7	0	y	1.00	6	0	6	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000096751.4	Gm28373	chr12	lncRNA	predicted gene 28373
novel_NIR_3892	chr12	102710029	102710859	+	102710425	102710859	A5SS	ENSMUST00000057416.8	novel	0.15	4	22	4	22	y	0.18	5	23	5	23	y	0.20	11	45	11	45	y	0.31	11	25	11	25	y	0.00	0	34	0	34	n	0.27	6	16	6	16	y	0.15	6	35	6	35	y	0.07	2	26	2	26	n	0.05	1	18	1	18	n	0.24	9	28	9	28	y	0.12	3	23	3	23	n	0.25	7	21	7	21	y	ENSMUSG00000046675.8	Tmem251	chr12	protein_coding	transmembrane protein 251
novel_NIR_3893	chr12	102779102;102802691	102802631;102803877	-	102779102	102803877	cassetteExon	ENSMUST00000223554.2	novel	0.14	1.0	6	1;1	6	n	0.00	0.0	5	0;0	5	n	0.15	3.0	17	2;4	17	y	0.08	1.0	11	0;2	11	n	0.12	1.5	11	0;3	11	n	0.07	0.5	7	0;1	7	n	0.27	1.5	4	1;2	4	n	0.00	0.0	9	0;0	9	n	0.00	0.0	7	0;0	7	n	0.05	1.0	21	2;0	21	n	0.14	1.0	6	1;1	6	n	0.00	0.0	11	0;0	11	n	ENSMUSG00000041702.8	Btbd7	chr12	protein_coding	BTB (POZ) domain containing 7
novel_NIR_3894	chr12	102802691	102803877	-	102779102	102803877	A3SS	ENSMUST00000223554.2	novel	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.19	4	17	4	17	n	0.15	2	11	2	11	y	0.21	3	11	3	11	y	0.12	1	7	1	7	n	0.33	2	4	2	4	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	21	0	21	n	0.14	1	6	1	6	n	0.00	0	11	0	11	n	ENSMUSG00000041702.8	Btbd7	chr12	protein_coding	BTB (POZ) domain containing 7
novel_NIR_3895	chr12	103114938	103115230	+	103112629	103115230	A5SS	ENSMUST00000101099.12	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021198.17	Unc79	chr12	protein_coding	unc-79 homolog
novel_NIR_3896	chr12	103287933	103290026	-	103287933	103290022	A5SS	ENSMUST00000021617.14	novel	0.00	0	4	0	4	n	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	15	0	15	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	19	0	19	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	ENSMUSG00000021200.15	Asb2	chr12	protein_coding	ankyrin repeat and SOCS box-containing 2
novel_NIR_3897	chr12	103312191	103313240	-	103312191	103321943	A5SS	ENSMUST00000021617.14	novel	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.19	4	17	4	17	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	ENSMUSG00000021200.15	Asb2	chr12	protein_coding	ankyrin repeat and SOCS box-containing 2
novel_NIR_3898	chr12	103312191	103314184	-	103312191	103321943	A5SS	ENSMUST00000021617.14	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	17	0	17	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000021200.15	Asb2	chr12	protein_coding	ankyrin repeat and SOCS box-containing 2
novel_NIR_3899	chr12	103390856	103391796	-	103390856	103391785	A5SS	ENSMUST00000110001.4	novel	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000041645.15	Ddx24	chr12	protein_coding	DEAD box helicase 24
novel_NIR_3900	chr12	103390856	103391846	-	103390730	103391846	A3SS	ENSMUST00000220975.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000041645.15	Ddx24	chr12	protein_coding	DEAD box helicase 24
novel_NIR_3901	chr12	103390856	103391846	-	103390845	103391846	A3SS	ENSMUST00000223233.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000041645.15	Ddx24	chr12	protein_coding	DEAD box helicase 24
novel_NIR_3902	chr12	103390856	103391846	-	103390856	103391785	A5SS	ENSMUST00000110001.4	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.75	6	2	6	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.50	1	1	1	1	n	0.50	2	2	2	2	y	ENSMUSG00000041645.15	Ddx24	chr12	protein_coding	DEAD box helicase 24
novel_NIR_3903	chr12	103401832	103402842	+	103401832	103405660	A3SS	ENSMUST00000076788.12	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.40	2	3	2	3	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000064215.14	Ifi27	chr12	protein_coding	interferon, alpha-inducible protein 27
novel_NIR_3904	chr12	103402941	103403042	+	103402941	103405660	A3SS	ENSMUST00000076702.12	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	10	0	10	n	0.00	0	5	0	5	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	ENSMUSG00000064215.14	Ifi27	chr12	protein_coding	interferon, alpha-inducible protein 27
novel_NIR_3905	chr12	103402941	103403651	+	103402941	103403709	A3SS	ENSMUST00000140838.2	novel	0.23	6	20	6	20	y	0.00	0	25	0	25	n	0.00	0	34	0	34	n	0.00	0	29	0	29	n	0.00	0	28	0	28	n	0.00	0	16	0	16	n	0.00	0	20	0	20	n	0.00	0	13	0	13	n	0.00	0	15	0	15	n	0.00	0	26	0	26	n	0.00	0	18	0	18	n	0.00	0	23	0	23	n	ENSMUSG00000064215.14	Ifi27	chr12	protein_coding	interferon, alpha-inducible protein 27
novel_NIR_3906	chr12	103402941	103403651	+	103402941	103405660	A3SS	ENSMUST00000076702.12	novel	1.00	6	0	6	0	y	-	-	-	-	-	-	0.00	0	10	0	10	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000064215.14	Ifi27	chr12	protein_coding	interferon, alpha-inducible protein 27
novel_NIR_3907	chr12	103402941	103403712	+	103402941	103403709	A3SS	ENSMUST00000140838.2	novel	0.31	9	20	9	20	y	0.04	1	25	1	25	n	0.00	0	34	0	34	n	0.09	3	29	3	29	n	0.20	7	28	7	28	y	0.11	2	16	2	16	n	0.20	5	20	5	20	y	0.00	0	13	0	13	n	0.00	0	15	0	15	n	0.30	11	26	11	26	y	0.05	1	18	1	18	n	0.04	1	23	1	23	n	ENSMUSG00000064215.14	Ifi27	chr12	protein_coding	interferon, alpha-inducible protein 27
novel_NIR_3908	chr12	103402941	103403712	+	103402941	103405660	A3SS	ENSMUST00000076702.12	novel	1.00	9	0	9	0	y	1.00	1	0	1	0	n	0.00	0	10	0	10	n	0.38	3	5	3	5	y	1.00	7	0	7	0	y	0.40	2	3	2	3	y	0.62	5	3	5	3	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	1.00	11	0	11	0	y	0.33	1	2	1	2	n	1.00	1	0	1	0	n	ENSMUSG00000064215.14	Ifi27	chr12	protein_coding	interferon, alpha-inducible protein 27
novel_NIR_3909	chr12	103524737	103542540	+	103524729	103542540	A5SS	ENSMUST00000021631.12	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.21	4	15	4	15	y	-	-	-	-	-	-	0.06	1	15	1	15	n	ENSMUSG00000021209.13	Ppp4r4	chr12	protein_coding	protein phosphatase 4, regulatory subunit 4
novel_NIR_3910	chr12	103524737	103542540	+	103542040	103542540	A5SS&ES	ENSMUST00000187155.7	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.80	4	1	4	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000021209.13	Ppp4r4	chr12	protein_coding	protein phosphatase 4, regulatory subunit 4
novel_NIR_3911	chr12	103564507	103565201	+	103564507	103564665	A3SS&ES	ENSMUST00000190151.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	ENSMUSG00000021209.13	Ppp4r4	chr12	protein_coding	protein phosphatase 4, regulatory subunit 4
novel_NIR_3912	chr12	103564507	103565201	+	103564507	103566623	A3SS	ENSMUST00000021631.12	novel	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.22	2	7	2	7	y	ENSMUSG00000021209.13	Ppp4r4	chr12	protein_coding	protein phosphatase 4, regulatory subunit 4
novel_NIR_3913	chr12	103592962	103594488	-	103592980	103594488	A3SS	ENSMUST00000121625.2	novel	1.00	10	0	10	0	y	0.00	0	419	0	419	n	0.00	0	423	0	423	n	0.00	0	286	0	286	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	369	0	369	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	326	0	326	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061947.11	Serpina10	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10
novel_NIR_3914	chr12	103593043	103594488	-	103592980	103594488	A3SS	ENSMUST00000121625.2	novel	-	-	-	-	-	-	0.00	0	419	0	419	n	0.00	0	423	0	423	n	0.00	0	286	0	286	n	-	-	-	-	-	-	1.00	71	0	71	0	y	0.00	0	369	0	369	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	326	0	326	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061947.11	Serpina10	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10
novel_NIR_3915	chr12	103593165	103594488	-	103592980	103594488	A3SS	ENSMUST00000121625.2	novel	1.00	10	0	10	0	y	0.00	0	419	0	419	n	0.01	5	423	5	423	n	0.00	1	286	1	286	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	369	0	369	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	326	0	326	n	1.00	4	0	4	0	y	-	-	-	-	-	-	ENSMUSG00000061947.11	Serpina10	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10
novel_NIR_3916	chr12	103593179	103594488	-	103592980	103594488	A3SS	ENSMUST00000121625.2	novel	1.00	35	0	35	0	y	0.05	23	419	23	419	n	0.07	32	423	32	423	n	0.10	32	286	32	286	n	1.00	41	0	41	0	y	1.00	3	0	3	0	y	0.13	56	369	56	369	n	1.00	22	0	22	0	y	1.00	20	0	20	0	y	0.04	15	326	15	326	n	1.00	22	0	22	0	y	1.00	15	0	15	0	y	ENSMUSG00000061947.11	Serpina10	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10
novel_NIR_3917	chr12	103593193	103594488	-	103592980	103594488	A3SS	ENSMUST00000121625.2	novel	-	-	-	-	-	-	0.00	0	419	0	419	n	0.01	3	423	3	423	n	0.00	0	286	0	286	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	369	0	369	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	326	0	326	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061947.11	Serpina10	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10
novel_NIR_3918	chr12	103620766	103621898	-	103620766	103622547	A5SS	ENSMUST00000152517.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	6	0	6	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000060807.8	Serpina6	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 6
novel_NIR_3919	chr12	103694692	103785108	-	103784306	103785108	3pMXE	ENSMUST00000172146.2	novel	0.00	0	226	0	226	n	0.00	0	70	0	70	n	0.00	0	36	0	36	n	0.02	1	40	1	40	n	0.11	10	83	10	83	n	0.00	0	65	0	65	n	0.00	0	97	0	97	n	0.00	0	55	0	55	n	0.09	7	72	7	72	n	0.00	0	96	0	96	n	0.23	13	43	13	43	y	0.08	11	129	11	129	n	ENSMUSG00000090555.2	Gm8893	chr12	unprocessed_pseudogene	predicted gene 8893
novel_NIR_3920	chr12	103698851	103699419	-	103698851	103706345	A5SS	ENSMUST00000186166.7	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000071178.12	Serpina1b	chr12	protein_coding	serine (or cysteine) preptidase inhibitor, clade A, member 1B
novel_NIR_3921	chr12	103698851	103699419	-	103698851	103741774	A5SS	ENSMUST00000164454.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000071178.12	Serpina1b	chr12	protein_coding	serine (or cysteine) preptidase inhibitor, clade A, member 1B
novel_NIR_3922	chr12	103698851	103699533	-	103698851	103706345	A5SS	ENSMUST00000186166.7	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000071178.12	Serpina1b	chr12	protein_coding	serine (or cysteine) preptidase inhibitor, clade A, member 1B
novel_NIR_3923	chr12	103698851	103699533	-	103698851	103741774	A5SS	ENSMUST00000164454.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000071178.12	Serpina1b	chr12	protein_coding	serine (or cysteine) preptidase inhibitor, clade A, member 1B
novel_NIR_3924	chr12	103698851	103699751	-	103698851	103706345	A5SS	ENSMUST00000186166.7	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000071178.12	Serpina1b	chr12	protein_coding	serine (or cysteine) preptidase inhibitor, clade A, member 1B
novel_NIR_3925	chr12	103698851	103699751	-	103698851	103741774	A5SS	ENSMUST00000164454.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000071178.12	Serpina1b	chr12	protein_coding	serine (or cysteine) preptidase inhibitor, clade A, member 1B
novel_NIR_3926	chr12	103698851	103704025	-	103698851	103701430	A5SS&ES	ENSMUST00000187220.2	novel	0.13	8	55	8	55	n	0.29	18	45	18	45	y	0.13	6	40	6	40	n	0.23	25	85	25	85	y	0.19	18	76	18	76	y	0.22	8	29	8	29	n	0.27	15	41	15	41	y	0.21	8	31	8	31	y	0.16	13	70	13	70	y	0.27	22	59	22	59	y	0.26	25	71	25	71	n	0.13	15	102	15	102	n	ENSMUSG00000071178.12	Serpina1b	chr12	protein_coding	serine (or cysteine) preptidase inhibitor, clade A, member 1B
novel_NIR_3927	chr12	103698851	103704025	-	103698851	103706345	A5SS	ENSMUST00000186166.7	novel	0.89	8	1	8	1	y	1.00	18	0	18	0	y	1.00	6	0	6	0	y	0.96	25	1	25	1	y	0.86	18	3	18	3	y	1.00	8	0	8	0	y	1.00	15	0	15	0	y	1.00	8	0	8	0	y	1.00	13	0	13	0	y	0.88	22	3	22	3	y	1.00	25	0	25	0	y	1.00	15	0	15	0	y	ENSMUSG00000071178.12	Serpina1b	chr12	protein_coding	serine (or cysteine) preptidase inhibitor, clade A, member 1B
novel_NIR_3928	chr12	103698851	103704025	-	103698851	103741774	A5SS	ENSMUST00000164454.3	novel	1.00	8	0	8	0	y	1.00	18	0	18	0	y	1.00	6	0	6	0	y	1.00	25	0	25	0	y	1.00	18	0	18	0	y	1.00	8	0	8	0	y	1.00	15	0	15	0	y	1.00	8	0	8	0	y	1.00	13	0	13	0	y	1.00	22	0	22	0	y	1.00	25	0	25	0	y	1.00	15	0	15	0	y	ENSMUSG00000071178.12	Serpina1b	chr12	protein_coding	serine (or cysteine) preptidase inhibitor, clade A, member 1B
novel_NIR_3929	chr12	103698851	103734998	-	103698851	103706345	5pMXE	ENSMUST00000186166.7	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	6	0	6	0	y	ENSMUSG00000071178.12	Serpina1b	chr12	protein_coding	serine (or cysteine) preptidase inhibitor, clade A, member 1B
novel_NIR_3930	chr12	103698851	103734998	-	103698851	103741774	A5SS	ENSMUST00000164454.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	ENSMUSG00000071178.12	Serpina1b	chr12	protein_coding	serine (or cysteine) preptidase inhibitor, clade A, member 1B
novel_NIR_3931	chr12	103698851	103739459	-	103698851	103706345	5pMXE	ENSMUST00000186166.7	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.40	2	3	2	3	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000071178.12	Serpina1b	chr12	protein_coding	serine (or cysteine) preptidase inhibitor, clade A, member 1B
novel_NIR_3932	chr12	103698851	103739459	-	103698851	103741774	A5SS	ENSMUST00000164454.3	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000071178.12	Serpina1b	chr12	protein_coding	serine (or cysteine) preptidase inhibitor, clade A, member 1B
novel_NIR_3933	chr12	103698851	103739790	-	103698851	103706345	5pMXE	ENSMUST00000186166.7	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.98	44	1	44	1	y	0.00	0	3	0	3	n	1.00	16	0	16	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	20	0	20	0	y	0.00	0	3	0	3	n	1.00	8	0	8	0	y	1.00	43	0	43	0	y	ENSMUSG00000071178.12	Serpina1b	chr12	protein_coding	serine (or cysteine) preptidase inhibitor, clade A, member 1B
novel_NIR_3934	chr12	103698851	103739790	-	103698851	103741774	A5SS	ENSMUST00000164454.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	44	0	44	0	y	-	-	-	-	-	-	1.00	16	0	16	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	20	0	20	0	y	-	-	-	-	-	-	1.00	8	0	8	0	y	1.00	43	0	43	0	y	ENSMUSG00000071178.12	Serpina1b	chr12	protein_coding	serine (or cysteine) preptidase inhibitor, clade A, member 1B
novel_NIR_3935	chr12	103698851	103794230	-	103698851	103706345	5pMXE	ENSMUST00000186166.7	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	31	0	31	0	y	-	-	-	-	-	-	ENSMUSG00000071178.12	Serpina1b	chr12	protein_coding	serine (or cysteine) preptidase inhibitor, clade A, member 1B
novel_NIR_3936	chr12	103698851	103794230	-	103698851	103741774	A5SS&ES	ENSMUST00000164454.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	31	0	31	0	y	-	-	-	-	-	-	ENSMUSG00000071178.12	Serpina1b	chr12	protein_coding	serine (or cysteine) preptidase inhibitor, clade A, member 1B
novel_NIR_3937	chr12	103698851	103923116	-	103698851	103706345	5pMXE	ENSMUST00000186166.7	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000071178.12	Serpina1b	chr12	protein_coding	serine (or cysteine) preptidase inhibitor, clade A, member 1B
novel_NIR_3938	chr12	103699820	103704356	-	103701590	103704356	A3SS&ES	ENSMUST00000187220.2	novel	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.00	0	21	0	21	n	0.00	0	12	0	12	n	0.07	1	13	1	13	n	0.00	0	7	0	7	n	0.00	0	28	0	28	n	0.00	0	18	0	18	n	0.17	3	15	3	15	y	0.00	0	28	0	28	n	ENSMUSG00000071178.12	Serpina1b	chr12	protein_coding	serine (or cysteine) preptidase inhibitor, clade A, member 1B
novel_NIR_3939	chr12	103701539	103704356	-	103701590	103704356	A3SS	ENSMUST00000187220.2	novel	0.43	13	17	13	17	y	0.55	12	10	12	10	y	0.32	7	15	7	15	y	0.45	10	12	10	12	y	0.43	16	21	16	21	y	0.14	2	12	2	12	n	0.07	1	13	1	13	n	0.42	5	7	5	7	y	0.26	10	28	10	28	y	0.44	14	18	14	18	y	0.38	9	15	9	15	y	0.35	15	28	15	28	y	ENSMUSG00000071178.12	Serpina1b	chr12	protein_coding	serine (or cysteine) preptidase inhibitor, clade A, member 1B
novel_NIR_3940	chr12	103730130	103835020	-	103834301	103835020	3pMXE	ENSMUST00000172300.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000091307.2	Gm8895	chr12	unprocessed_pseudogene	predicted gene 8895
novel_NIR_3941	chr12	103824315	103824699	-	103824315	103826673	A5SS	ENSMUST00000072876.12	novel	0.00	0	18	0	18	n	0.00	0	6	0	6	n	0.00	0	19	0	19	n	0.00	0	7	0	7	n	0.00	0	19	0	19	n	0.00	0	7	0	7	n	0.19	5	22	5	22	y	0.00	0	10	0	10	n	0.00	0	22	0	22	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	22	0	22	n	ENSMUSG00000066366.15	Serpina1a	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 1A
novel_NIR_3942	chr12	103824315	103828695	-	103824315	103826673	A5SS&ES	ENSMUST00000072876.12	novel	0.00	0	18	0	18	n	0.00	0	6	0	6	n	0.00	0	19	0	19	n	0.30	3	7	3	7	y	0.00	0	19	0	19	n	0.00	0	7	0	7	n	0.00	0	22	0	22	n	0.09	1	10	1	10	n	0.00	0	22	0	22	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	22	0	22	n	ENSMUSG00000066366.15	Serpina1a	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 1A
novel_NIR_3943	chr12	103824315	103829450	-	103824315	103825260	A5SS&ES	ENSMUST00000124717.2	novel	0.32	22	46	22	46	y	0.35	20	37	20	37	y	0.22	15	53	15	53	y	0.28	23	58	23	58	y	0.18	17	80	17	80	y	0.16	7	36	7	36	y	0.26	21	60	21	60	y	0.37	17	29	17	29	y	0.21	13	48	13	48	y	0.13	11	75	11	75	n	0.21	12	45	12	45	y	0.19	24	100	24	100	y	ENSMUSG00000066366.15	Serpina1a	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 1A
novel_NIR_3944	chr12	103824315	103829450	-	103824315	103826673	A5SS&ES	ENSMUST00000072876.12	novel	0.55	22	18	22	18	y	0.77	20	6	20	6	y	0.44	15	19	15	19	y	0.77	23	7	23	7	y	0.47	17	19	17	19	y	0.50	7	7	7	7	y	0.49	21	22	21	22	y	0.63	17	10	17	10	y	0.37	13	22	13	22	y	0.50	11	11	11	11	y	0.50	12	12	12	12	y	0.52	24	22	24	22	y	ENSMUSG00000066366.15	Serpina1a	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 1A
novel_NIR_3945	chr12	103824315	103831755	-	103824315	103829781	5pMXE	ENSMUST00000085056.8	novel	0.19	179	771	179	771	y	0.13	118	817	118	817	n	0.13	129	838	129	838	n	0.13	179	1251	179	1251	n	0.16	249	1307	249	1307	y	0.11	67	525	67	525	n	0.21	236	868	236	868	y	0.13	103	673	103	673	n	0.15	170	981	170	981	y	0.14	207	1266	207	1266	n	0.17	184	927	184	927	y	0.14	227	1368	227	1368	n	ENSMUSG00000066366.15	Serpina1a	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 1A
novel_NIR_3946	chr12	103824315;103825254	103825027;103829781	-	103824315;103825503	103825260;103829781	MXE	ENSMUST00000124717.2	novel	0.11	4.5	37.0	4;5	46;28	n	0.19	7.0	29.5	3;11	37;22	y	0.19	12.5	52.5	7;18	53;52	y	0.22	14.5	51.5	5;24	58;45	y	0.17	13.5	67.5	6;21	80;55	y	0.19	8.0	35.0	7;9	36;34	y	0.22	16.0	57.0	9;23	60;54	y	0.25	9.5	28.5	1;18	29;28	n	0.16	10.0	51.5	0;20	48;55	n	0.16	13.0	66.5	9;17	75;58	y	0.21	13.5	49.5	13;14	45;54	y	0.12	11.0	82.0	2;20	100;64	n	ENSMUSG00000066366.15	Serpina1a	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 1A
novel_NIR_3947	chr12	103824315;103825254	103825027;103829781	-	103824315;103826887	103826673;103829781	MXE	ENSMUST00000072876.12	novel	0.29	4.5	11.0	4;5	18;4	y	0.64	7.0	4.0	3;11	6;2	y	0.51	12.5	12.0	7;18	19;5	y	0.76	14.5	4.5	5;24	7;2	y	0.53	13.5	12.0	6;21	19;5	y	0.55	8.0	6.5	7;9	7;6	y	0.56	16.0	12.5	9;23	22;3	y	0.56	9.5	7.5	1;18	10;5	n	0.43	10.0	13.0	0;20	22;4	n	0.63	13.0	7.5	9;17	11;4	y	0.69	13.5	6.0	13;14	12;0	y	0.43	11.0	14.5	2;20	22;7	y	ENSMUSG00000066366.15	Serpina1a	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 1A
novel_NIR_3948	chr12	103824315;103825254	103825212;103829781	-	103824315;103825503	103825260;103829781	MXE	ENSMUST00000124717.2	novel	0.06	2.5	37.0	0;5	46;28	n	0.16	5.5	29.5	0;11	37;22	n	0.19	12.0	52.5	6;18	53;52	y	0.20	13.0	51.5	2;24	58;45	y	0.13	10.5	67.5	0;21	80;55	n	0.11	4.5	35.0	0;9	36;34	n	0.19	13.0	57.0	3;23	60;54	y	0.24	9.0	28.5	0;18	29;28	n	0.16	10.0	51.5	0;20	48;55	n	0.13	10.0	66.5	3;17	75;58	n	0.17	10.0	49.5	6;14	45;54	y	0.11	10.0	82.0	0;20	100;64	n	ENSMUSG00000066366.15	Serpina1a	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 1A
novel_NIR_3949	chr12	103824315;103825254	103825212;103829781	-	103824315;103826887	103826673;103829781	MXE	ENSMUST00000072876.12	novel	0.19	2.5	11.0	0;5	18;4	n	0.58	5.5	4.0	0;11	6;2	n	0.50	12.0	12.0	6;18	19;5	y	0.74	13.0	4.5	2;24	7;2	y	0.47	10.5	12.0	0;21	19;5	n	0.41	4.5	6.5	0;9	7;6	n	0.51	13.0	12.5	3;23	22;3	y	0.55	9.0	7.5	0;18	10;5	n	0.43	10.0	13.0	0;20	22;4	n	0.57	10.0	7.5	3;17	11;4	y	0.62	10.0	6.0	6;14	12;0	y	0.41	10.0	14.5	0;20	22;7	n	ENSMUSG00000066366.15	Serpina1a	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 1A
novel_NIR_3950	chr12	103824315;103825254	103825215;103829781	-	103824315;103825503	103825260;103829781	MXE	ENSMUST00000124717.2	novel	0.15	6.5	37.0	8;5	46;28	y	0.18	6.5	29.5	2;11	37;22	y	0.18	11.5	52.5	5;18	53;52	y	0.21	14.0	51.5	4;24	58;45	y	0.15	12.0	67.5	3;21	80;55	y	0.14	5.5	35.0	2;9	36;34	n	0.18	12.5	57.0	2;23	60;54	y	0.29	11.5	28.5	5;18	29;28	y	0.18	11.0	51.5	2;20	48;55	y	0.14	10.5	66.5	4;17	75;58	n	0.16	9.5	49.5	5;14	45;54	y	0.14	13.5	82.0	7;20	100;64	n	ENSMUSG00000066366.15	Serpina1a	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 1A
novel_NIR_3951	chr12	103824315;103825254	103825215;103829781	-	103824315;103826887	103826673;103829781	MXE	ENSMUST00000072876.12	novel	0.37	6.5	11.0	8;5	18;4	y	0.62	6.5	4.0	2;11	6;2	y	0.49	11.5	12.0	5;18	19;5	y	0.76	14.0	4.5	4;24	7;2	y	0.50	12.0	12.0	3;21	19;5	y	0.46	5.5	6.5	2;9	7;6	y	0.50	12.5	12.5	2;23	22;3	y	0.61	11.5	7.5	5;18	10;5	y	0.46	11.0	13.0	2;20	22;4	y	0.58	10.5	7.5	4;17	11;4	y	0.61	9.5	6.0	5;14	12;0	y	0.48	13.5	14.5	7;20	22;7	y	ENSMUSG00000066366.15	Serpina1a	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 1A
novel_NIR_3952	chr12	103865648;103866588	103866361;103871118	-	103865648	103871118	cassetteExon	ENSMUST00000074051.6	novel	0.13	19.5	131	19;20	131	n	0.19	27.5	117	40;15	117	y	0.13	19.5	133	15;24	133	n	0.14	35.5	210	39;32	210	n	0.09	40.5	415	45;36	415	n	0.17	14.5	73	11;18	73	y	0.03	29.0	855	27;31	855	n	0.15	19.5	114	27;12	114	y	0.14	53.0	327	76;30	327	n	0.11	35.0	288	42;28	288	n	0.12	28.0	214	27;29	214	n	0.18	33.5	155	46;21	155	y	ENSMUSG00000079015.3	Serpina1c	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 1C
novel_NIR_3953	chr12	103865648;103866618	103866361;103871118	-	103865648	103871118	cassetteExon	ENSMUST00000074051.6	novel	0.15	23.5	131	19;28	131	y	0.20	29.0	117	40;18	117	y	0.11	17.0	133	15;19	133	n	0.19	49.5	210	39;60	210	y	0.10	45.5	415	45;46	415	n	0.12	10.0	73	11;9	73	n	0.04	37.0	855	27;47	855	n	0.14	18.5	114	27;10	114	n	0.13	51.0	327	76;26	327	n	0.13	42.0	288	42;42	288	n	0.12	29.5	214	27;32	214	n	0.21	41.5	155	46;37	155	y	ENSMUSG00000079015.3	Serpina1c	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 1C
novel_NIR_3954	chr12	103917671	103918378	-	103917671	103924993	A5SS	ENSMUST00000122229.8	novel	1.00	27	0	27	0	y	0.95	19	1	19	1	y	1.00	57	0	57	0	y	1.00	41	0	41	0	y	0.99	109	1	109	1	y	1.00	49	0	49	0	y	0.94	51	3	51	3	y	0.98	43	1	43	1	y	1.00	51	0	51	0	y	1.00	46	0	46	0	y	1.00	24	0	24	0	y	0.96	68	3	68	3	y	ENSMUSG00000072849.11	Serpina1e	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 1E
novel_NIR_3955	chr12	103917671	103918464	-	103917671	103924993	A5SS	ENSMUST00000122229.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000072849.11	Serpina1e	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 1E
novel_NIR_3956	chr12	103917671	103920267	-	103917671	103924993	A5SS	ENSMUST00000122229.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	3	0	3	n	ENSMUSG00000072849.11	Serpina1e	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 1E
novel_NIR_3957	chr12	103917671	103922770	-	103917671	103924993	A5SS	ENSMUST00000122229.8	novel	1.00	3	0	3	0	y	0.67	2	1	2	1	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	0.88	7	1	7	1	y	1.00	4	0	4	0	y	0.40	2	3	2	3	y	0.80	4	1	4	1	y	1.00	1	0	1	0	n	1.00	5	0	5	0	y	-	-	-	-	-	-	0.73	8	3	8	3	y	ENSMUSG00000072849.11	Serpina1e	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 1E
novel_NIR_3958	chr12	103917671	103923031	-	103917671	103924993	A5SS	ENSMUST00000122229.8	novel	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000072849.11	Serpina1e	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 1E
novel_NIR_3959	chr12	103917671	103923112	-	103917671	103924993	A5SS	ENSMUST00000122229.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000072849.11	Serpina1e	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 1E
novel_NIR_3960	chr12	103917671	103956148	-	103917671	103924993	5pMXE	ENSMUST00000122229.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000072849.11	Serpina1e	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 1E
novel_NIR_3961	chr12	103952321	103952613	-	103952325	103952613	A3SS	ENSMUST00000139777.2	novel	0.00	0	18	0	18	n	0.23	6	20	6	20	y	0.00	0	27	0	27	n	0.00	0	13	0	13	n	0.00	0	31	0	31	n	0.00	0	16	0	16	n	0.00	0	19	0	19	n	0.00	0	17	0	17	n	0.00	0	14	0	14	n	0.00	0	31	0	31	n	0.00	0	21	0	21	n	0.00	0	22	0	22	n	ENSMUSG00000063232.17	Serpina11	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11
novel_NIR_3962	chr12	103952329	103952613	-	103952325	103952613	A3SS	ENSMUST00000139777.2	novel	0.00	0	18	0	18	n	0.05	1	20	1	20	n	0.04	1	27	1	27	n	0.28	5	13	5	13	y	0.00	0	31	0	31	n	0.00	0	16	0	16	n	0.00	0	19	0	19	n	0.37	10	17	10	17	y	0.00	0	14	0	14	n	0.30	13	31	13	31	y	0.05	1	21	1	21	n	0.00	0	22	0	22	n	ENSMUSG00000063232.17	Serpina11	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11
novel_NIR_3963	chr12	103952329	103956120	-	103952768	103956120	A3SS	ENSMUST00000074693.13	novel	0.19	8	35	8	35	y	0.00	0	44	0	44	n	0.00	0	72	0	72	n	0.00	0	42	0	42	n	0.07	6	86	6	86	n	0.08	4	49	4	49	n	0.15	12	66	12	66	y	0.00	0	52	0	52	n	0.00	0	35	0	35	n	0.00	0	76	0	76	n	0.00	0	33	0	33	n	0.08	4	45	4	45	n	ENSMUSG00000063232.17	Serpina11	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11
novel_NIR_3964	chr12	103952329	103956148	-	103952793	103956148	A3SS	ENSMUST00000151709.3	novel	1.00	3	0	3	0	y	1.00	9	0	9	0	y	1.00	15	0	15	0	y	1.00	6	0	6	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	6	0	6	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000063232.17	Serpina11	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11
novel_NIR_3965	chr12	103952329	103956148	-	103954748	103956148	A3SS&ES	ENSMUST00000176246.3	novel	1.00	3	0	3	0	y	0.90	9	1	9	1	y	0.62	15	9	15	9	y	1.00	6	0	6	0	y	0.50	5	5	5	5	y	0.00	0	12	0	12	n	0.64	7	4	7	4	y	0.00	0	7	0	7	n	0.50	4	4	4	4	y	0.55	6	5	6	5	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	ENSMUSG00000063232.17	Serpina11	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11
novel_NIR_3966	chr12	103952768	103954558	-	103952768	103954625	A5SS	ENSMUST00000176246.3	novel	0.00	0	7	0	7	n	0.33	1	2	1	2	n	0.06	1	16	1	16	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.50	2	2	2	2	y	0.00	0	6	0	6	n	ENSMUSG00000063232.17	Serpina11	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11
novel_NIR_3967	chr12	103952768	103954558	-	103952768	103962767	A5SS	ENSMUST00000176106.2	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000093753.2	Gm28577	chr12	lncRNA	predicted gene 28577
novel_NIR_3968	chr12	103952768	103955428	-	103952768	103954625	A5SS&ES	ENSMUST00000176246.3	novel	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.06	1	16	1	16	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.20	2	8	2	8	y	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	ENSMUSG00000063232.17	Serpina11	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11
novel_NIR_3969	chr12	103952768	103955428	-	103952768	103962767	A5SS	ENSMUST00000176106.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000093753.2	Gm28577	chr12	lncRNA	predicted gene 28577
novel_NIR_3970	chr12	103954745	103956148	-	103952793	103956148	A3SS	ENSMUST00000151709.3	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000063232.17	Serpina11	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11
novel_NIR_3971	chr12	103954745	103956148	-	103954748	103956148	A3SS	ENSMUST00000176246.3	novel	1.00	2	0	2	0	y	0.50	1	1	1	1	n	0.18	2	9	2	9	y	1.00	1	0	1	0	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.22	2	7	2	7	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000063232.17	Serpina11	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11
novel_NIR_3972	chr12	103955601	103956148	-	103952793	103956148	A3SS	ENSMUST00000151709.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000063232.17	Serpina11	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11
novel_NIR_3973	chr12	103955601	103956148	-	103954748	103956148	A3SS	ENSMUST00000176246.3	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.25	3	9	3	9	n	1.00	1	0	1	0	n	0.44	4	5	4	5	n	0.00	0	12	0	12	n	0.33	2	4	2	4	y	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.33	1	2	1	2	n	ENSMUSG00000063232.17	Serpina11	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11
novel_NIR_3974	chr12	103967759	103968738	-	103967759	103974518	A5SS	ENSMUST00000058464.5	novel	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	8	0	8	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	18	0	18	0	y	1.00	3	0	3	0	y	1.00	34	0	34	0	y	1.00	15	0	15	0	y	ENSMUSG00000058260.3	Serpina9	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9
novel_NIR_3975	chr12	104118353	104140729	-	104118353	104120038	5pMXE	ENSMUST00000085050.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	30	0	30	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	23	0	23	n	0.67	2	1	2	1	y	0.00	0	15	0	15	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000066361.4	Serpina3c	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 3C
novel_NIR_3976	chr12	104118353	104140729	-	104139762	104140729	3pMXE	ENSMUST00000163110.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000091573.2	Serpina3d-ps	chr12	unprocessed_pseudogene	serine (or cysteine) peptidase inhibitor, clade A, member 3D, pseudogene
novel_NIR_3977	chr12	104157857	104158536	-	104157857	104158578	A5SS	ENSMUST00000165968.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000091553.2	Serpina3e-ps	chr12	unprocessed_pseudogene	serine (or cysteine) peptidase inhibitor, clade A, member 3E, pseudogene
novel_NIR_3978	chr12	104157857	104158917	-	104157857	104158578	A5SS	ENSMUST00000165968.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000091553.2	Serpina3e-ps	chr12	unprocessed_pseudogene	serine (or cysteine) peptidase inhibitor, clade A, member 3E, pseudogene
novel_NIR_3979	chr12	104157857	104161043	-	104157857	104158578	5pMXE	ENSMUST00000165968.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000091553.2	Serpina3e-ps	chr12	unprocessed_pseudogene	serine (or cysteine) peptidase inhibitor, clade A, member 3E, pseudogene
novel_NIR_3980	chr12	104202577	104203994	+	104202577	104203454	A3SS&ES	ENSMUST00000171065.8	novel	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.40	6	9	6	9	y	-	-	-	-	-	-	0.00	0	6	0	6	n	0.44	4	5	4	5	y	0.33	3	6	3	6	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	ENSMUSG00000041481.18	Serpina3g	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 3G
novel_NIR_3981	chr12	104202577	104203994	+	104202577	104204055	A3SS	ENSMUST00000043315.15	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041481.18	Serpina3g	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 3G
novel_NIR_3982	chr12	104202577	104203994	+	104202577;104203545	104203454;104203994	ES	ENSMUST00000170628.2	novel	0.00	0	1.0	0	2;0	n	1.00	3	0.0	3	0;0	y	0.55	6	5.0	6	9;1	y	0.00	0	0.5	0	0;1	n	0.00	0	5.0	0	6;4	n	0.62	4	2.5	4	5;0	y	0.43	3	4.0	3	6;2	y	0.00	0	0.5	0	1;0	n	0.00	0	1.0	0	0;2	n	0.00	0	2.0	0	2;2	n	0.00	0	2.5	0	4;1	n	0.00	0	2.0	0	1;3	n	ENSMUSG00000041481.18	Serpina3g	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 3G
novel_NIR_3983	chr12	104202577	104205294	+	104202577;104204603	104204055;104205294	ES	ENSMUST00000043315.15	novel	0.00	0	8.0	0	0;16	n	0.00	0	7.5	0	0;15	n	0.00	0	11.5	0	0;23	n	0.00	0	5.0	0	0;10	n	0.13	2	13.0	2	0;26	n	0.27	2	5.5	2	0;11	y	0.17	2	9.5	2	0;19	y	0.13	1	6.5	1	0;13	n	0.00	0	4.0	0	0;8	n	0.36	2	3.5	2	0;7	y	0.20	1	4.0	1	0;8	n	0.00	0	8.5	0	0;17	n	ENSMUSG00000041481.18	Serpina3g	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 3G
novel_NIR_3984	chr12	104202577	104205294	+	104204603	104205294	5pMXE	ENSMUST00000239375.2	novel	0.00	0	16	0	16	n	0.00	0	15	0	15	n	0.00	0	23	0	23	n	0.00	0	10	0	10	n	0.07	2	26	2	26	n	0.15	2	11	2	11	y	0.10	2	19	2	19	n	0.07	1	13	1	13	n	0.00	0	8	0	8	n	0.22	2	7	2	7	y	0.11	1	8	1	8	n	0.00	0	17	0	17	n	ENSMUSG00000118588.2	RP24-87H1.13	chr12	unprocessed_pseudogene	--
novel_NIR_3985	chr12	104206656	104359992	+	104206656	104207295	3pMXE	ENSMUST00000043315.15	novel	0.36	5	9	5	9	y	0.32	6	13	6	13	y	0.59	24	17	24	17	y	0.38	6	10	6	10	y	0.31	9	20	9	20	y	0.57	20	15	20	15	y	0.00	0	30	0	30	n	0.61	14	9	14	9	y	0.29	2	5	2	5	y	0.36	4	7	4	7	y	0.29	2	5	2	5	y	0.08	1	11	1	11	n	ENSMUSG00000041481.18	Serpina3g	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 3G
novel_NIR_3986	chr12	104206656	104360004	+	104206656	104207295	3pMXE	ENSMUST00000043315.15	novel	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.00	0	20	0	20	n	0.00	0	15	0	15	n	0.00	0	30	0	30	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.50	11	11	11	11	y	ENSMUSG00000041481.18	Serpina3g	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 3G
novel_NIR_3987	chr12	104206656	104378651	+	104206656	104207295	3pMXE	ENSMUST00000043315.15	novel	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.00	0	20	0	20	n	0.00	0	15	0	15	n	0.23	9	30	9	30	y	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.85	28	5	28	5	y	0.00	0	11	0	11	n	ENSMUSG00000041481.18	Serpina3g	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 3G
novel_NIR_3988	chr12	104206656	104378677	+	104206656	104207295	3pMXE	ENSMUST00000043315.15	novel	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.00	0	20	0	20	n	0.57	20	15	20	15	y	0.00	0	30	0	30	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	ENSMUSG00000041481.18	Serpina3g	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 3G
novel_NIR_3989	chr12	104206656	104379671	+	104206656	104207295	3pMXE	ENSMUST00000043315.15	novel	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.00	0	20	0	20	n	0.00	0	15	0	15	n	0.00	0	30	0	30	n	0.59	13	9	13	9	y	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	ENSMUSG00000041481.18	Serpina3g	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 3G
novel_NIR_3990	chr12	104231687	104232704	+	104231971	104232704	A5SS	ENSMUST00000109958.3	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.57	65	50	65	50	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.57	51	38	51	38	y	0.60	12	8	12	8	y	0.66	21	11	21	11	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000079014.5	Serpina3i	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 3I
novel_NIR_3991	chr12	104232013	104232704	+	104231971	104232704	A5SS	ENSMUST00000109958.3	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	50	50	50	50	y	-	-	-	-	-	-	-	-	-	-	-	-	0.03	1	38	1	38	n	0.00	0	8	0	8	n	0.50	11	11	11	11	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000079014.5	Serpina3i	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 3I
novel_NIR_3992	chr12	104232018	104232704	+	104231971	104232704	A5SS	ENSMUST00000109958.3	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.49	49	50	49	50	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.44	30	38	30	38	y	0.11	1	8	1	8	n	0.54	13	11	13	11	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000079014.5	Serpina3i	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 3I
novel_NIR_3993	chr12	104232977	104233918	+	104232977	104233915	A3SS	ENSMUST00000109958.3	novel	-	-	-	-	-	-	0.50	2	2	2	2	y	0.16	51	261	51	261	y	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.11	23	187	23	187	n	0.15	6	35	6	35	y	0.09	9	86	9	86	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000079014.5	Serpina3i	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 3I
novel_NIR_3994	chr12	104234065	104379671	+	104234065	104234703	3pMXE	ENSMUST00000109958.3	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	246	0	246	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.00	0	169	0	169	n	0.00	0	36	0	36	n	0.00	0	69	0	69	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000079014.5	Serpina3i	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 3I
novel_NIR_3995	chr12	104304804	104304957	+	104304804	104355323	A3SS	ENSMUST00000101078.12	novel	0.08	1	12	1	12	n	0.00	0	4	0	4	n	0.36	10	18	10	18	y	0.06	1	15	1	15	n	0.30	6	14	6	14	y	0.18	2	9	2	9	y	0.33	6	12	6	12	y	0.25	6	18	6	18	y	0.17	1	5	1	5	n	0.12	1	7	1	7	n	0.50	3	3	3	3	y	0.50	3	3	3	3	y	ENSMUSG00000079012.12	Serpina3m	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 3M
novel_NIR_3996	chr12	104304804	104304990	+	104304804	104355323	A3SS	ENSMUST00000101078.12	novel	0.87	80	12	80	12	y	0.93	57	4	57	4	y	0.96	420	18	420	18	y	0.93	195	15	195	15	y	0.95	251	14	251	14	y	0.96	236	9	236	9	y	0.95	226	12	226	12	y	0.93	225	18	225	18	y	0.95	103	5	103	5	y	0.94	110	7	110	7	y	0.98	122	3	122	3	y	0.98	165	3	165	3	y	ENSMUSG00000079012.12	Serpina3m	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 3M
novel_NIR_3997	chr12	104304804	104304994	+	104304804	104355323	A3SS	ENSMUST00000101078.12	novel	0.20	3	12	3	12	y	0.56	5	4	5	4	y	0.65	34	18	34	18	y	0.38	9	15	9	15	y	0.60	21	14	21	14	y	0.71	22	9	22	9	y	0.54	14	12	14	12	y	0.38	11	18	11	18	y	0.38	3	5	3	5	y	0.59	10	7	10	7	y	0.70	7	3	7	3	y	0.75	9	3	9	3	y	ENSMUSG00000079012.12	Serpina3m	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 3M
novel_NIR_3998	chr12	104304804	104306754	+	104304804	104355323	A3SS	ENSMUST00000101078.12	novel	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	18	0	18	n	0.00	0	15	0	15	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	18	0	18	n	0.00	0	5	0	5	n	0.30	3	7	3	7	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000079012.12	Serpina3m	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 3M
novel_NIR_3999	chr12	104304804	104306760	+	104304804	104355323	A3SS	ENSMUST00000101078.12	novel	0.98	487	12	487	12	y	0.98	174	4	174	4	y	0.98	745	18	745	18	y	0.98	748	15	748	15	y	0.99	1426	14	1426	14	y	0.99	864	9	864	9	y	0.99	810	12	810	12	y	0.98	1044	18	1044	18	y	0.99	445	5	445	5	y	0.94	101	7	101	7	y	0.99	314	3	314	3	y	1.00	653	3	653	3	y	ENSMUSG00000079012.12	Serpina3m	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 3M
novel_NIR_4000	chr12	104304804	104306770	+	104304804	104355323	A3SS	ENSMUST00000101078.12	novel	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	18	0	18	n	0.00	0	15	0	15	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	18	0	18	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.99	452	3	452	3	y	ENSMUSG00000079012.12	Serpina3m	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 3M
novel_NIR_4001	chr12	104304804	104306840	+	104304804	104355323	A3SS	ENSMUST00000101078.12	novel	0.98	512	12	512	12	y	0.99	340	4	340	4	y	0.99	1285	18	1285	18	y	0.98	744	15	744	15	y	0.99	1454	14	1454	14	y	0.99	909	9	909	9	y	0.99	1037	12	1037	12	y	0.98	969	18	969	18	y	0.99	548	5	548	5	y	0.99	706	7	706	7	y	0.99	503	3	503	3	y	1.00	751	3	751	3	y	ENSMUSG00000079012.12	Serpina3m	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 3M
novel_NIR_4002	chr12	104304804	104307003	+	104304804	104355323	A3SS	ENSMUST00000101078.12	novel	0.93	153	12	153	12	y	0.97	112	4	112	4	y	0.96	428	18	428	18	y	0.93	201	15	201	15	y	0.96	363	14	363	14	y	0.97	264	9	264	9	y	0.96	296	12	296	12	y	0.94	267	18	267	18	y	0.97	140	5	140	5	y	0.97	197	7	197	7	y	0.98	127	3	127	3	y	0.99	217	3	217	3	y	ENSMUSG00000079012.12	Serpina3m	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 3M
novel_NIR_4003	chr12	104304804	104309198	+	104304804	104355323	A3SS	ENSMUST00000101078.12	novel	0.00	0	12	0	12	n	0.75	12	4	12	4	y	0.49	17	18	17	18	y	0.00	0	15	0	15	n	0.12	2	14	2	14	n	0.79	34	9	34	9	y	0.43	9	12	9	12	n	0.33	9	18	9	18	y	0.00	0	5	0	5	n	0.53	8	7	8	7	y	0.00	0	3	0	3	n	0.40	2	3	2	3	y	ENSMUSG00000079012.12	Serpina3m	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 3M
novel_NIR_4004	chr12	104304804	104310386	+	104304804	104355323	A3SS	ENSMUST00000101078.12	novel	0.40	8	12	8	12	y	0.85	23	4	23	4	y	0.63	31	18	31	18	y	0.48	14	15	14	15	y	0.71	34	14	34	14	n	0.75	27	9	27	9	y	0.68	26	12	26	12	y	0.56	23	18	23	18	n	0.44	4	5	4	5	y	0.00	0	7	0	7	n	0.84	16	3	16	3	y	0.89	25	3	25	3	y	ENSMUSG00000079012.12	Serpina3m	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 3M
novel_NIR_4005	chr12	104304804	104324245	+	104304804	104355323	A3SS	ENSMUST00000101078.12	novel	0.00	0	12	0	12	n	0.20	1	4	1	4	n	0.00	0	18	0	18	n	0.06	1	15	1	15	n	0.07	1	14	1	14	n	0.25	3	9	3	9	y	0.00	0	12	0	12	n	0.00	0	18	0	18	n	0.17	1	5	1	5	n	0.12	1	7	1	7	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000079012.12	Serpina3m	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 3M
novel_NIR_4006	chr12	104304804;104309371	104309198;104357715	+	104304804;104355971	104355323;104357715	MXE	ENSMUST00000101078.12	novel	0.00	0.0	1091.0	0;0	12;2170	n	0.01	6.0	921.5	12;0	4;1839	n	0.00	8.5	3244.0	17;0	18;6470	n	0.00	0.0	901.0	0;0	15;1787	n	0.55	2440.0	1992.5	2;4878	14;3971	y	0.01	17.0	1954.5	34;0	9;3900	n	0.00	4.5	1865.0	9;0	12;3718	n	0.00	4.5	1803.0	9;0	18;3588	n	0.00	0.0	537.5	0;0	5;1070	n	0.00	4.0	993.5	8;0	7;1980	n	0.00	0.0	597.0	0;0	3;1191	n	0.00	1.0	746.0	2;0	3;1489	n	ENSMUSG00000079012.12	Serpina3m	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 3M
novel_NIR_4007	chr12	104353482	104355565	+	104353482	104355323	A3SS	ENSMUST00000168797.2	novel	0.14	205	1270	205	1270	n	0.19	210	921	210	921	y	0.15	754	4270	754	4270	y	0.13	209	1405	209	1405	n	0.12	413	3076	413	3076	n	0.16	448	2406	448	2406	y	0.15	398	2217	398	2217	y	0.10	275	2561	275	2561	n	0.11	90	716	90	716	n	0.12	159	1143	159	1143	n	0.13	107	713	107	713	n	0.13	150	999	150	999	n	ENSMUSG00000079012.12	Serpina3m	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 3M
novel_NIR_4008	chr12	104353780	104355323	+	104304804	104355323	A5SS	ENSMUST00000101078.12	novel	0.00	0	12	0	12	n	0.64	7	4	7	4	y	0.70	43	18	43	18	y	0.17	3	15	3	15	y	0.59	20	14	20	14	y	0.73	24	9	24	9	y	0.50	12	12	12	12	y	0.56	23	18	23	18	y	0.38	3	5	3	5	y	0.42	5	7	5	7	y	0.00	0	3	0	3	n	0.67	6	3	6	3	y	ENSMUSG00000079012.12	Serpina3m	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 3M
novel_NIR_4009	chr12	104373050	104374913	+	104373054	104374913	A5SS	ENSMUST00000021506.6	novel	0.27	1240	3337	1240	3337	y	0.28	1195	3043	1195	3043	y	0.30	7021	16567	7021	16567	y	0.30	1659	3903	1659	3903	y	0.30	3784	8804	3784	8804	y	0.33	3899	8036	3899	8036	y	0.29	2403	5881	2403	5881	y	0.30	3590	8189	3590	8189	y	0.26	601	1700	601	1700	y	0.26	914	2607	914	2607	y	0.26	614	1713	614	1713	y	0.26	889	2492	889	2492	y	ENSMUSG00000021091.9	Serpina3n	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 3N
novel_NIR_4010	chr12	104697441	104704028	-	104697441	104698059	A5SS&ES	ENSMUST00000041987.7	novel	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	30	0	30	n	0.00	0	9	0	9	n	0.00	0	21	0	21	n	0.07	1	14	1	14	n	0.13	2	13	2	13	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.17	2	10	2	10	y	0.00	0	12	0	12	n	0.00	0	14	0	14	n	ENSMUSG00000041415.11	Dicer1	chr12	protein_coding	dicer 1, ribonuclease type III
novel_NIR_4011	chr12	104705107	104718007	-	104698246	104718007	A3SS	ENSMUST00000041987.7	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	13	0	13	0	y	1.00	13	0	13	0	y	0.95	20	1	20	1	y	0.88	7	1	7	1	y	0.80	4	1	4	1	y	1.00	20	0	20	0	y	1.00	9	0	9	0	y	1.00	14	0	14	0	y	1.00	5	0	5	0	y	1.00	14	0	14	0	n	ENSMUSG00000041415.11	Dicer1	chr12	protein_coding	dicer 1, ribonuclease type III
novel_NIR_4012	chr12	104738222	104739437	-	104738222	104739441	A5SS	ENSMUST00000109937.9	novel	0.00	0	13	0	13	n	0.15	3	17	3	17	y	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	18	0	18	n	0.07	1	13	1	13	n	0.04	1	23	1	23	n	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.00	0	19	0	19	n	0.00	0	23	0	23	n	0.00	0	9	0	9	n	ENSMUSG00000021097.16	Clmn	chr12	protein_coding	calmin
novel_NIR_4013	chr12	104740808	104742116	-	104740808	104742107	A5SS	ENSMUST00000223103.2	novel	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.00	0	4	0	4	n	ENSMUSG00000021097.16	Clmn	chr12	protein_coding	calmin
novel_NIR_4014	chr12	104920565	104921389	-	104920565	104921786	A5SS	ENSMUST00000067005.11	novel	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.10	1	9	1	9	n	0.07	1	13	1	13	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	ENSMUSG00000054150.13	Syne3	chr12	protein_coding	spectrin repeat containing, nuclear envelope family member 3
novel_NIR_4015	chr12	104922057	104924213	-	104921968	104924213	A3SS	ENSMUST00000067005.11	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	ENSMUSG00000054150.13	Syne3	chr12	protein_coding	spectrin repeat containing, nuclear envelope family member 3
novel_NIR_4016	chr12	104942154	104976250	-	104942154	104975973	5pMXE	ENSMUST00000067005.11	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	7	0	7	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	ENSMUSG00000054150.13	Syne3	chr12	protein_coding	spectrin repeat containing, nuclear envelope family member 3
novel_NIR_4017	chr12	104999241	105004413	+	104999241	105004383	A3SS	ENSMUST00000223244.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021102.5	Glrx5	chr12	protein_coding	glutaredoxin 5
novel_NIR_4018	chr12	105615347	105615734	-	105615420	105615734	A3SS	ENSMUST00000041055.9	novel	0.05	1	19	1	19	n	0.27	3	8	3	8	y	0.22	9	32	9	32	y	0.18	4	18	4	18	y	0.26	7	20	7	20	y	0.22	5	18	5	18	y	0.22	5	18	5	18	y	0.11	2	17	2	17	n	0.21	4	15	4	15	y	0.06	1	17	1	17	n	0.00	0	24	0	24	n	0.10	1	9	1	9	n	ENSMUSG00000041341.11	Atg2b	chr12	protein_coding	autophagy related 2B
novel_NIR_4019	chr12	105651717	105664988	+	105651717	105655621	3pMXE	ENSMUST00000222841.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000044715.8	Gskip	chr12	protein_coding	GSK3B interacting protein
novel_NIR_4020	chr12	105751173	105765915	+	105751173	105771186	A3SS	ENSMUST00000165584.8	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021111.16	Papola	chr12	protein_coding	poly (A) polymerase alpha
novel_NIR_4021	chr12	105751424	105765910	+	105751072	105765910	A5SS	ENSMUST00000172040.8	novel	1.00	1	0	1	0	n	0.60	3	2	3	2	y	1.00	7	0	7	0	y	0.75	6	2	6	2	y	1.00	4	0	4	0	y	0.00	0	1	0	1	n	0.83	5	1	5	1	y	0.38	3	5	3	5	y	0.00	0	1	0	1	n	0.80	4	1	4	1	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000021111.16	Papola	chr12	protein_coding	poly (A) polymerase alpha
novel_NIR_4022	chr12	105771267	105772780	+	105771267	105774814	A3SS	ENSMUST00000166329.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021111.16	Papola	chr12	protein_coding	poly (A) polymerase alpha
novel_NIR_4023	chr12	106029067	106036787	+	106029067	106036784	A3SS	ENSMUST00000072040.7	novel	0.15	4	23	4	23	y	0.00	0	21	0	21	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.09	2	21	2	21	n	0.00	0	11	0	11	n	0.00	0	26	0	26	n	0.36	4	7	4	7	y	0.06	1	16	1	16	n	0.00	0	25	0	25	n	0.09	2	21	2	21	n	0.00	0	29	0	29	n	ENSMUSG00000021115.16	Vrk1	chr12	protein_coding	vaccinia related kinase 1
novel_NIR_4024	chr12	108131431	108142579	-	108131431	108133532	A5SS&ES	ENSMUST00000125916.3	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.43	3	4	3	4	y	0.14	1	6	1	6	n	0.50	1	1	1	1	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	ENSMUSG00000056770.16	Setd3	chr12	protein_coding	SET domain containing 3
novel_NIR_4025	chr12	108131431	108144688	-	108131431	108133532	A5SS&ES	ENSMUST00000125916.3	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.00	0	1	0	1	n	0.50	5	5	5	5	y	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.14	1	6	1	6	n	0.00	0	9	0	9	n	ENSMUSG00000056770.16	Setd3	chr12	protein_coding	SET domain containing 3
novel_NIR_4026	chr12	108174188	108187968	-	108174188;108177881	108177774;108187968	ES	ENSMUST00000222310.2	novel	0.00	0	16.0	0	12;20	n	0.00	0	15.5	0	22;9	n	0.00	0	5.0	0	6;4	n	0.15	3	17.5	3	21;14	y	0.10	2	18.5	2	22;15	n	0.00	0	5.0	0	6;4	n	0.00	0	15.0	0	18;12	n	0.00	0	9.5	0	13;6	n	0.00	0	12.5	0	16;9	n	0.00	0	28.0	0	42;14	n	0.00	0	20.5	0	26;15	n	0.00	0	11.5	0	15;8	n	ENSMUSG00000084883.3	Ccdc85c	chr12	protein_coding	coiled-coil domain containing 85C
novel_NIR_4027	chr12	108177878	108187968	-	108177881	108187968	A3SS	ENSMUST00000222310.2	novel	0.09	2	20	2	20	n	0.00	0	9	0	9	n	0.20	1	4	1	4	n	0.22	4	14	4	14	y	0.00	0	15	0	15	n	0.00	0	4	0	4	n	0.29	5	12	5	12	y	0.14	1	6	1	6	n	0.18	2	9	2	9	y	0.36	8	14	8	14	y	0.25	5	15	5	15	y	0.33	4	8	4	8	y	ENSMUSG00000084883.3	Ccdc85c	chr12	protein_coding	coiled-coil domain containing 85C
novel_NIR_4028	chr12	108177878	108187968	-	108183084	108187968	A3SS&ES	ENSMUST00000136175.3	novel	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	8	0	8	0	y	1.00	5	0	5	0	y	1.00	4	0	4	0	y	ENSMUSG00000084883.3	Ccdc85c	chr12	protein_coding	coiled-coil domain containing 85C
novel_NIR_4029	chr12	108177881	108185179	-	108177881	108183046	A5SS&ES	ENSMUST00000136175.3	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000084883.3	Ccdc85c	chr12	protein_coding	coiled-coil domain containing 85C
novel_NIR_4030	chr12	108802569	108803355	+	108802506	108803355	A5SS	ENSMUST00000221453.2	novel	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.40	2	3	2	3	y	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000048856.10	Slc25a47	chr12	protein_coding	solute carrier family 25, member 47
novel_NIR_4031	chr12	108802569	108803355	+	108802569	108819275	A3SS	ENSMUST00000223296.2	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000048856.10	Slc25a47	chr12	protein_coding	solute carrier family 25, member 47
novel_NIR_4032	chr12	108803476	108807065	+	108803476	108819275	A3SS	ENSMUST00000221787.2	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.80	4	1	4	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000048856.10	Slc25a47	chr12	protein_coding	solute carrier family 25, member 47
novel_NIR_4033	chr12	108818503	108819275	+	108802569	108819275	A5SS	ENSMUST00000223296.2	novel	0.00	0	1	0	1	n	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	8	0	8	0	y	1.00	4	0	4	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	ENSMUSG00000048856.10	Slc25a47	chr12	protein_coding	solute carrier family 25, member 47
novel_NIR_4034	chr12	108818503	108819275	+	108803476	108819275	A5SS	ENSMUST00000221787.2	novel	0.00	0	2	0	2	n	0.67	6	3	6	3	y	0.14	1	6	1	6	n	0.80	8	2	8	2	y	1.00	4	0	4	0	y	1.00	3	0	3	0	y	0.00	0	7	0	7	n	0.50	2	2	2	2	y	0.50	1	1	1	1	n	0.50	2	2	2	2	y	1.00	2	0	2	0	y	0.43	3	4	3	4	y	ENSMUSG00000048856.10	Slc25a47	chr12	protein_coding	solute carrier family 25, member 47
novel_NIR_4035	chr12	108819152	108819275	+	108802569	108819275	A5SS	ENSMUST00000223296.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	16	0	16	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000048856.10	Slc25a47	chr12	protein_coding	solute carrier family 25, member 47
novel_NIR_4036	chr12	108819152	108819275	+	108803476	108819275	A5SS	ENSMUST00000221787.2	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.73	16	6	16	6	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000048856.10	Slc25a47	chr12	protein_coding	solute carrier family 25, member 47
novel_NIR_4037	chr12	108854474	108857326	-	108854474	108859086	A5SS	ENSMUST00000161410.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021266.17	Wars	chr12	protein_coding	tryptophanyl-tRNA synthetase
novel_NIR_4038	chr12	108854474	108860051	-	108854474	108859086	5pMXE	ENSMUST00000161410.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000021266.17	Wars	chr12	protein_coding	tryptophanyl-tRNA synthetase
novel_NIR_4039	chr12	108958863	108976606	+	108958863	108990889	A3SS	ENSMUST00000167816.8	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.25	2	6	2	6	y	0.00	0	8	0	8	n	0.00	0	7	0	7	n	ENSMUSG00000040877.17	Wdr25	chr12	protein_coding	WD repeat domain 25
novel_NIR_4040	chr12	109510924	109515726	+	109510924	109512313	A3SS&ES	ENSMUST00000124106.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000021268.18	Meg3	chr12	lncRNA	maternally expressed 3
novel_NIR_4041	chr12	109510924	109515726	+	109510924;109512425	109512313;109515726	ES	ENSMUST00000143836.8	novel	0.00	0	1.5	0	0;3	n	0.00	0	2.5	0	1;4	n	0.00	0	5.5	0	3;8	n	0.00	0	5.5	0	6;5	n	0.00	0	3.5	0	1;6	n	0.00	0	2.0	0	3;1	n	0.00	0	7.0	0	12;2	n	-	-	-	-	-	-	0.00	0	3.0	0	4;2	n	0.36	2	3.5	2	3;4	y	0.00	0	2.0	0	1;3	n	0.00	0	2.0	0	3;1	n	ENSMUSG00000021268.18	Meg3	chr12	lncRNA	maternally expressed 3
novel_NIR_4042	chr12	109510924	109515726	+	109512425	109515726	A5SS&ES	ENSMUST00000126289.8	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000021268.18	Meg3	chr12	lncRNA	maternally expressed 3
novel_NIR_4043	chr12	109956012	109958921	-	109958034	109958921	3pMXE	ENSMUST00000222974.2	novel	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.12	1	7	1	7	n	0.50	1	1	1	1	n	0.20	1	4	1	4	n	0.47	7	8	7	8	y	0.33	3	6	3	6	y	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.14	1	6	1	6	n	0.33	6	12	6	12	y	ENSMUSG00000113063.2	Gm34667	chr12	lncRNA	predicted gene, 34667
novel_NIR_4044	chr12	109959239	109963965	-	109959239	109990088	A5SS	ENSMUST00000222974.2	novel	0.11	2	16	2	16	n	0.50	9	9	9	9	n	0.67	4	2	4	2	n	0.46	11	13	11	13	n	0.39	18	28	18	28	n	0.33	3	6	3	6	n	0.54	13	11	13	11	n	0.77	10	3	10	3	n	0.37	11	19	11	19	n	0.42	14	19	14	19	n	0.62	20	12	20	12	y	0.32	18	39	18	39	n	ENSMUSG00000113063.2	Gm34667	chr12	lncRNA	predicted gene, 34667
novel_NIR_4045	chr12	109959239;109964108	109963965;109990088	-	109959239	109990088	cassetteExon	ENSMUST00000222974.2	novel	0.24	5.0	16	2;8	16	y	0.51	9.5	9	9;10	9	y	0.60	3.0	2	4;2	2	y	0.53	14.5	13	11;18	13	y	0.38	17.5	28	18;17	28	y	0.50	6.0	6	3;9	6	y	0.51	11.5	11	13;10	11	y	0.77	10.0	3	10;10	3	y	0.47	17.0	19	11;23	19	y	0.48	17.5	19	14;21	19	y	0.45	10.0	12	20;0	12	n	0.34	20.5	39	18;23	39	y	ENSMUSG00000113063.2	Gm34667	chr12	lncRNA	predicted gene, 34667
novel_NIR_4046	chr12	109959239;109976554	109976468;109990088	-	109959239	109990088	cassetteExon	ENSMUST00000222974.2	novel	0.06	1.0	16	0;2	16	n	0.10	1.0	9	0;2	9	n	0.00	0.0	2	0;0	2	n	0.04	0.5	13	1;0	13	n	0.07	2.0	28	3;1	28	n	0.00	0.0	6	0;0	6	n	0.33	5.5	11	3;8	11	y	0.50	3.0	3	2;4	3	y	0.12	2.5	19	3;2	19	n	0.07	1.5	19	0;3	19	n	0.17	2.5	12	0;5	12	n	0.12	5.5	39	4;7	39	n	ENSMUSG00000113063.2	Gm34667	chr12	lncRNA	predicted gene, 34667
novel_NIR_4047	chr12	109976549	109990088	-	109959239	109990088	A3SS	ENSMUST00000222974.2	novel	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.60	3	2	3	2	y	0.00	0	13	0	13	n	0.00	0	28	0	28	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	19	0	19	n	0.00	0	19	0	19	n	0.00	0	12	0	12	n	0.00	0	39	0	39	n	ENSMUSG00000113063.2	Gm34667	chr12	lncRNA	predicted gene, 34667
novel_NIR_4048	chr12	109976554	109990088	-	109959239	109990088	A3SS	ENSMUST00000222974.2	novel	0.11	2	16	2	16	n	0.18	2	9	2	9	y	0.00	0	2	0	2	n	0.00	0	13	0	13	n	0.03	1	28	1	28	n	0.00	0	6	0	6	n	0.42	8	11	8	11	n	0.57	4	3	4	3	n	0.10	2	19	2	19	n	0.14	3	19	3	19	n	0.29	5	12	5	12	y	0.15	7	39	7	39	n	ENSMUSG00000113063.2	Gm34667	chr12	lncRNA	predicted gene, 34667
novel_NIR_4049	chr12	109982234	109990088	-	109959239	109990088	A3SS	ENSMUST00000222974.2	novel	0.06	1	16	1	16	n	0.25	3	9	3	9	y	0.00	0	2	0	2	n	0.00	0	13	0	13	n	0.07	2	28	2	28	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	19	0	19	n	0.05	1	19	1	19	n	0.33	6	12	6	12	y	0.07	3	39	3	39	n	ENSMUSG00000113063.2	Gm34667	chr12	lncRNA	predicted gene, 34667
novel_NIR_4050	chr12	109987206	109990088	-	109959239	109990088	A3SS	ENSMUST00000222974.2	novel	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.50	2	2	2	2	y	0.00	0	13	0	13	n	0.00	0	28	0	28	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	19	0	19	n	0.00	0	19	0	19	n	0.00	0	12	0	12	n	0.00	0	39	0	39	n	ENSMUSG00000113063.2	Gm34667	chr12	lncRNA	predicted gene, 34667
novel_NIR_4051	chr12	110414471	110417127	+	110414471	110415964	A3SS	ENSMUST00000222276.2	novel	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.03	1	39	1	39	n	0.00	0	6	0	6	n	0.07	2	26	2	26	n	0.10	2	19	2	19	n	0.23	6	20	6	20	y	0.00	0	23	0	23	n	0.10	1	9	1	9	n	0.00	0	17	0	17	n	0.19	3	13	3	13	y	0.00	0	8	0	8	n	ENSMUSG00000017843.15	Ppp2r5c	chr12	protein_coding	protein phosphatase 2, regulatory subunit B', gamma
novel_NIR_4052	chr12	110414471	110424914	+	110414471	110415964	3pMXE	ENSMUST00000222276.2	novel	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	39	0	39	n	0.40	4	6	4	6	y	0.00	0	26	0	26	n	0.00	0	19	0	19	n	0.00	0	20	0	20	n	0.00	0	23	0	23	n	0.00	0	9	0	9	n	0.15	3	17	3	17	y	0.00	0	13	0	13	n	0.00	0	8	0	8	n	ENSMUSG00000017843.15	Ppp2r5c	chr12	protein_coding	protein phosphatase 2, regulatory subunit B', gamma
novel_NIR_4053	chr12	110430362	110441819	-	110441354	110441819	3pMXE	ENSMUST00000221557.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000113585.2	Gm19605	chr12	lncRNA	predicted gene, 19605
novel_NIR_4054	chr12	110449487	110450470	-	110443435	110450470	A3SS	ENSMUST00000221514.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.60	3	2	3	2	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000113585.2	Gm19605	chr12	lncRNA	predicted gene, 19605
novel_NIR_4055	chr12	110449487	110450470	-	110445057	110450470	A3SS	ENSMUST00000220603.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000113585.2	Gm19605	chr12	lncRNA	predicted gene, 19605
novel_NIR_4056	chr12	110449487	110450470	-	110446060	110450470	A3SS	ENSMUST00000221791.2	novel	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.12	1	7	1	7	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.60	3	2	3	2	y	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000113585.2	Gm19605	chr12	lncRNA	predicted gene, 19605
novel_NIR_4057	chr12	110537202	110537632	+	110537202	110541179	A3SS	ENSMUST00000084985.11	novel	0.08	1	12	1	12	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.10	1	9	1	9	n	0.23	3	10	3	10	y	0.00	0	4	0	4	n	0.18	2	9	2	9	y	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.22	4	14	4	14	y	0.00	0	5	0	5	n	0.22	2	7	2	7	y	ENSMUSG00000017843.15	Ppp2r5c	chr12	protein_coding	protein phosphatase 2, regulatory subunit B', gamma
novel_NIR_4058	chr12	110537202	110537632	+	110537202	110546835	A3SS	ENSMUST00000109832.3	novel	0.20	1	4	1	4	n	0.00	0	10	0	10	n	0.05	1	20	1	20	n	0.07	1	14	1	14	n	0.20	3	12	3	12	y	0.00	0	9	0	9	n	0.08	2	22	2	22	n	0.00	0	15	0	15	n	0.00	0	16	0	16	n	0.18	4	18	4	18	y	0.00	0	11	0	11	n	0.12	2	14	2	14	n	ENSMUSG00000017843.15	Ppp2r5c	chr12	protein_coding	protein phosphatase 2, regulatory subunit B', gamma
novel_NIR_4059	chr12	110745912	110759807	+	110745912	110759548	A3SS	ENSMUST00000095410.8	novel	0.00	0	10	0	10	n	0.15	2	11	2	11	y	0.00	0	28	0	28	n	0.06	1	17	1	17	n	0.07	2	25	2	25	n	0.33	2	4	2	4	y	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	8	0	8	n	0.00	0	22	0	22	n	0.00	0	19	0	19	n	0.00	0	26	0	26	n	ENSMUSG00000037957.15	Wdr20	chr12	protein_coding	WD repeat domain 20
novel_NIR_4060	chr12	110745912	110763377	+	110745912	110759548	3pMXE	ENSMUST00000095410.8	novel	0.09	1	10	1	10	n	0.00	0	11	0	11	n	0.00	0	28	0	28	n	0.00	0	17	0	17	n	0.04	1	25	1	25	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.20	2	8	2	8	y	0.00	0	22	0	22	n	0.00	0	19	0	19	n	0.00	0	26	0	26	n	ENSMUSG00000037957.15	Wdr20	chr12	protein_coding	WD repeat domain 20
novel_NIR_4061	chr12	110745912	110763377	+	110760807	110763377	5pMXE	ENSMUST00000194118.2	novel	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.12	1	7	1	7	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.29	2	5	2	5	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	ENSMUSG00000037957.15	Wdr20	chr12	protein_coding	WD repeat domain 20
novel_NIR_4062	chr12	110760807	110769839	+	110745912	110769839	A5SS	ENSMUST00000193053.6	novel	0.36	9	16	9	16	y	0.22	6	21	6	21	y	0.17	7	35	7	35	y	0.12	3	21	3	21	n	0.10	5	43	5	43	n	0.00	0	20	0	20	n	0.09	3	32	3	32	n	0.18	6	28	6	28	y	0.26	6	17	6	17	y	0.00	0	22	0	22	n	0.14	3	18	3	18	n	0.03	1	30	1	30	n	ENSMUSG00000037957.15	Wdr20	chr12	protein_coding	WD repeat domain 20
novel_NIR_4063	chr12	110760807	110769839	+	110760807;110763441	110763377;110769839	ES	ENSMUST00000194118.2	novel	0.69	9	4.0	9	3;5	y	0.52	6	5.5	6	2;9	y	0.74	7	2.5	7	2;3	y	0.38	3	5.0	3	5;5	y	0.40	5	7.5	5	7;8	y	0.00	0	2.0	0	1;3	n	0.24	3	9.5	3	6;13	y	0.67	6	3.0	6	2;4	y	0.50	6	6.0	6	5;7	y	0.00	0	5.0	0	5;5	n	0.30	3	7.0	3	6;8	y	0.12	1	7.0	1	5;9	n	ENSMUSG00000037957.15	Wdr20	chr12	protein_coding	WD repeat domain 20
novel_NIR_4064	chr12	110822306	110824918	+	110822306	110827230	A3SS	ENSMUST00000170060.4	novel	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.55	6	5	6	5	y	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	ENSMUSG00000021271.6	Zfp839	chr12	protein_coding	zinc finger protein 839
novel_NIR_4065	chr12	110822306	110824918	+	110822306	110830398	A3SS	ENSMUST00000222460.2	novel	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.60	6	4	6	4	y	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	ENSMUSG00000021271.6	Zfp839	chr12	protein_coding	zinc finger protein 839
novel_NIR_4066	chr12	110827457	110827558	+	110827457	110830398	A3SS	ENSMUST00000170060.4	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.29	2	5	2	5	y	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	1.00	1	0	1	0	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	ENSMUSG00000021271.6	Zfp839	chr12	protein_coding	zinc finger protein 839
novel_NIR_4067	chr12	110831439	110833142	+	110831439;110832802	110832674;110833142	ES	ENSMUST00000170060.4	novel	0.46	6	7.0	6	9;5	y	0.09	1	10.5	1	7;14	n	0.52	7	6.5	7	6;7	y	0.45	7	8.5	7	12;5	y	0.00	0	11.0	0	11;11	n	0.31	2	4.5	2	3;6	y	0.36	7	12.5	7	13;12	y	0.12	1	7.0	1	10;4	n	0.13	1	6.5	1	7;6	n	0.13	1	6.5	1	6;7	n	0.31	2	4.5	2	4;5	y	0.43	6	8.0	6	10;6	y	ENSMUSG00000021271.6	Zfp839	chr12	protein_coding	zinc finger protein 839
novel_NIR_4068	chr12	110840586	110843275	-	110840563	110843275	A3SS	ENSMUST00000043716.9	novel	0.05	1	18	1	18	n	0.00	0	15	0	15	n	0.04	1	24	1	24	n	0.03	1	30	1	30	n	0.06	3	45	3	45	n	0.05	1	18	1	18	n	0.08	3	34	3	34	n	0.00	0	27	0	27	n	0.15	3	17	3	17	y	0.00	0	41	0	41	n	0.00	0	28	0	28	n	0.06	1	15	1	15	n	ENSMUSG00000021276.11	Cinp	chr12	protein_coding	cyclin-dependent kinase 2 interacting protein
novel_NIR_4069	chr12	110840586	110843275	-	110841710	110843275	3pMXE	ENSMUST00000221414.2	novel	0.07	1	13	1	13	n	0.00	0	13	0	13	n	0.08	1	11	1	11	n	0.11	1	8	1	8	n	0.18	3	14	3	14	y	0.17	1	5	1	5	n	0.15	3	17	3	17	y	0.00	0	7	0	7	n	0.43	3	4	3	4	y	0.00	0	9	0	9	n	0.00	0	18	0	18	n	0.08	1	12	1	12	n	ENSMUSG00000021276.11	Cinp	chr12	protein_coding	cyclin-dependent kinase 2 interacting protein
novel_NIR_4070	chr12	110841760	110843275	-	110841710	110843275	A3SS	ENSMUST00000221414.2	novel	0.00	0	13	0	13	n	0.00	0	13	0	13	n	0.27	4	11	4	11	y	0.00	0	8	0	8	n	0.07	1	14	1	14	n	0.00	0	5	0	5	n	0.00	0	17	0	17	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	18	0	18	n	0.00	0	12	0	12	n	ENSMUSG00000021276.11	Cinp	chr12	protein_coding	cyclin-dependent kinase 2 interacting protein
novel_NIR_4071	chr12	110843404	110845422	-	110843404	110843657	A5SS&ES	ENSMUST00000220607.2	novel	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.00	0	5	0	5	n	0.00	0	7	0	7	n	ENSMUSG00000021276.11	Cinp	chr12	protein_coding	cyclin-dependent kinase 2 interacting protein
novel_NIR_4072	chr12	110843404	110845422	-	110843404;110843806	110843657;110845422	ES	ENSMUST00000223170.2	novel	0.00	0	3.5	0	6;1	n	0.00	0	1.5	0	3;0	n	0.00	0	4.5	0	8;1	n	0.00	0	2.0	0	4;0	n	0.00	0	4.0	0	7;1	n	0.00	0	5.0	0	7;3	n	0.00	0	1.0	0	2;0	n	0.00	0	2.5	0	4;1	n	0.00	0	1.0	0	2;0	n	0.44	2	2.5	2	3;2	y	0.00	0	2.5	0	5;0	n	0.00	0	3.5	0	7;0	n	ENSMUSG00000021276.11	Cinp	chr12	protein_coding	cyclin-dependent kinase 2 interacting protein
novel_NIR_4073	chr12	110843404	110845422	-	110844353	110845422	3pMXE	ENSMUST00000221901.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021276.11	Cinp	chr12	protein_coding	cyclin-dependent kinase 2 interacting protein
novel_NIR_4074	chr12	110846245	110850324	-	110849980	110850324	A3SS&ES	ENSMUST00000223079.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	0.25	1	3	1	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021276.11	Cinp	chr12	protein_coding	cyclin-dependent kinase 2 interacting protein
novel_NIR_4075	chr12	110850492	110856123	-	110850492	110855500	5pMXE	ENSMUST00000043716.9	novel	0.04	1	25	1	25	n	0.04	1	22	1	22	n	0.07	3	42	3	42	n	0.00	0	48	0	48	n	0.03	2	57	2	57	n	0.00	0	22	0	22	n	0.02	1	51	1	51	n	0.00	0	27	0	27	n	0.00	0	29	0	29	n	0.02	1	44	1	44	n	0.00	0	32	0	32	n	0.17	6	29	6	29	y	ENSMUSG00000021276.11	Cinp	chr12	protein_coding	cyclin-dependent kinase 2 interacting protein
novel_NIR_4076	chr12	110855760	110881084	+	110855760;110862808	110862521;110881084	ES	ENSMUST00000165978.3	novel	0.00	0	3.0	0	2;4	n	0.00	0	2.5	0	1;4	n	0.00	0	5.0	0	3;7	n	0.00	0	2.0	0	0;4	n	0.00	0	4.0	0	3;5	n	0.00	0	3.0	0	1;5	n	0.00	0	4.0	0	4;4	n	0.00	0	4.5	0	5;4	n	0.00	0	4.5	0	2;7	n	0.40	2	3.0	2	1;5	y	-	-	-	-	-	-	0.00	0	4.5	0	2;7	n	ENSMUSG00000021275.17	Tecpr2	chr12	protein_coding	tectonin beta-propeller repeat containing 2
novel_NIR_4077	chr12	110881212	110881727	+	110881212	110881781	A3SS	ENSMUST00000165978.3	novel	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.22	2	7	2	7	y	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000021275.17	Tecpr2	chr12	protein_coding	tectonin beta-propeller repeat containing 2
novel_NIR_4078	chr12	110934875	110935601	+	110934875	110935303	A3SS	ENSMUST00000165978.3	novel	0.29	2	5	2	5	y	0.00	0	6	0	6	n	0.00	0	26	0	26	n	0.00	0	10	0	10	n	0.08	2	22	2	22	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	ENSMUSG00000021275.17	Tecpr2	chr12	protein_coding	tectonin beta-propeller repeat containing 2
novel_NIR_4079	chr12	110943982	110944080	-	110943982	110944098	A5SS	ENSMUST00000135131.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	ENSMUSG00000037904.15	Ankrd9	chr12	protein_coding	ankyrin repeat domain 9
novel_NIR_4080	chr12	110943982	110944080	-	110943982	110944382	A5SS	ENSMUST00000128353.8	novel	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.50	1	1	1	1	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.50	2	2	2	2	y	0.00	0	6	0	6	n	0.25	1	3	1	3	n	0.00	0	5	0	5	n	ENSMUSG00000037904.15	Ankrd9	chr12	protein_coding	ankyrin repeat domain 9
novel_NIR_4081	chr12	110943982	110944080	-	110943982	110945274	A5SS	ENSMUST00000142012.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000037904.15	Ankrd9	chr12	protein_coding	ankyrin repeat domain 9
novel_NIR_4082	chr12	111006455	111059515	+	111006455;111048241	111048158;111059515	ES	ENSMUST00000084968.14	novel	0.00	0	8.5	0	7;10	n	0.00	0	6.5	0	8;5	n	0.00	0	28.5	0	24;33	n	0.00	0	11.0	0	8;14	n	0.00	0	22.5	0	23;22	n	0.00	0	16.0	0	20;12	n	0.00	0	16.5	0	13;20	n	0.18	2	9.0	2	8;10	y	0.00	0	10.0	0	10;10	n	0.00	0	21.5	0	17;26	n	0.00	0	11.5	0	9;14	n	0.00	0	13.0	0	14;12	n	ENSMUSG00000037896.18	Rcor1	chr12	protein_coding	REST corepressor 1
novel_NIR_4083	chr12	111133541	111186251	+	111133541	111186245	A3SS	ENSMUST00000139162.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000021277.17	Traf3	chr12	protein_coding	TNF receptor-associated factor 3
novel_NIR_4084	chr12	111133541	111203996	+	111133036	111203996	A5SS	ENSMUST00000117269.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	4	0	4	0	y	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021277.17	Traf3	chr12	protein_coding	TNF receptor-associated factor 3
novel_NIR_4085	chr12	111133541	111203996	+	111133541;111186355	111186245;111203996	ES	ENSMUST00000139162.8	novel	0.00	0	4.0	0	1;7	n	0.00	0	4.0	0	0;8	n	0.06	1	15.0	1	4;26	n	0.00	0	2.5	0	2;3	n	0.28	4	10.5	4	5;16	y	0.21	2	7.5	2	5;10	y	0.00	0	5.5	0	1;10	n	0.24	2	6.5	2	2;11	y	0.00	0	2.5	0	0;5	n	0.29	1	2.5	1	1;4	n	0.00	0	1.5	0	1;2	n	0.00	0	3.5	0	1;6	n	ENSMUSG00000021277.17	Traf3	chr12	protein_coding	TNF receptor-associated factor 3
novel_NIR_4086	chr12	111133541	111203996	+	111186355	111203996	A5SS&ES	ENSMUST00000021706.11	novel	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.04	1	26	1	26	n	0.00	0	3	0	3	n	0.20	4	16	4	16	y	0.17	2	10	2	10	y	0.00	0	10	0	10	n	0.15	2	11	2	11	y	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	ENSMUSG00000021277.17	Traf3	chr12	protein_coding	TNF receptor-associated factor 3
novel_NIR_4087	chr12	111145973	111186245	+	111133036	111186245	A5SS	ENSMUST00000021706.11	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000021277.17	Traf3	chr12	protein_coding	TNF receptor-associated factor 3
novel_NIR_4088	chr12	111145973	111186245	+	111133541	111186245	A5SS	ENSMUST00000139162.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.29	2	5	2	5	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000021277.17	Traf3	chr12	protein_coding	TNF receptor-associated factor 3
novel_NIR_4089	chr12	111278140	111279761	-	111278000	111279761	A3SS	ENSMUST00000041965.5	novel	0.08	3	36	3	36	n	0.32	13	28	13	28	y	0.05	3	60	3	60	n	0.07	4	54	4	54	n	0.22	20	71	20	71	y	0.11	6	49	6	49	n	0.20	11	45	11	45	n	0.10	4	35	4	35	n	0.30	11	26	11	26	y	0.10	8	72	8	72	n	0.28	12	31	12	31	y	0.24	14	44	14	44	y	ENSMUSG00000021279.6	Cdc42bpb	chr12	protein_coding	CDC42 binding protein kinase beta
novel_NIR_4090	chr12	111396467	111397103	+	111395970	111397103	A5SS	ENSMUST00000223050.2	novel	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	ENSMUSG00000021280.10	Exoc3l4	chr12	protein_coding	exocyst complex component 3-like 4
novel_NIR_4091	chr12	111414528	111414681	+	111411717	111414681	A5SS	ENSMUST00000174298.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000021281.16	Tnfaip2	chr12	protein_coding	tumor necrosis factor, alpha-induced protein 2
novel_NIR_4092	chr12	111414528	111414681	+	111412571	111414681	A5SS	ENSMUST00000174692.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000021281.16	Tnfaip2	chr12	protein_coding	tumor necrosis factor, alpha-induced protein 2
novel_NIR_4093	chr12	111415073	111415169	+	111415073	111415174	A3SS	ENSMUST00000156003.8	novel	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.60	3	2	3	2	y	0.40	4	6	4	6	y	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	5	0	5	n	0.50	2	2	2	2	y	ENSMUSG00000021281.16	Tnfaip2	chr12	protein_coding	tumor necrosis factor, alpha-induced protein 2
novel_NIR_4094	chr12	111415073	111415205	+	111415073	111415174	A3SS	ENSMUST00000156003.8	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.33	3	6	3	6	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	2	0	2	n	ENSMUSG00000021281.16	Tnfaip2	chr12	protein_coding	tumor necrosis factor, alpha-induced protein 2
novel_NIR_4095	chr12	111503715	111504789	+	111504673	111504789	5pMXE	ENSMUST00000166123.9	novel	0.09	6	60	6	60	n	0.18	8	37	8	37	y	0.06	8	132	8	132	n	0.19	21	87	21	87	y	0.08	9	98	9	98	n	0.02	1	45	1	45	n	0.10	6	52	6	52	n	0.10	5	47	5	47	n	0.04	3	65	3	65	n	0.13	18	118	18	118	n	0.16	9	48	9	48	y	0.06	6	95	6	95	n	ENSMUSG00000021282.18	Eif5	chr12	protein_coding	eukaryotic translation initiation factor 5
novel_NIR_4096	chr12	111504982	111505985	+	111504982	111505981	A3SS	ENSMUST00000222375.2	novel	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.33	7	14	7	14	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	ENSMUSG00000021282.18	Eif5	chr12	protein_coding	eukaryotic translation initiation factor 5
novel_NIR_4097	chr12	111508744	111509120	+	111508744	111509214	A3SS	ENSMUST00000221101.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.82	14	3	14	3	y	0.00	0	2	0	2	n	0.91	21	2	21	2	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	20	0	20	0	y	0.00	0	1	0	1	n	0.84	16	3	16	3	y	ENSMUSG00000021282.18	Eif5	chr12	protein_coding	eukaryotic translation initiation factor 5
novel_NIR_4098	chr12	111508744	111509120	+	111508744	111509534	A3SS	ENSMUST00000222388.2	novel	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.61	14	9	14	9	y	-	-	-	-	-	-	0.68	21	10	21	10	y	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.87	20	3	20	3	y	0.00	0	3	0	3	n	0.76	16	5	16	5	y	ENSMUSG00000021282.18	Eif5	chr12	protein_coding	eukaryotic translation initiation factor 5
novel_NIR_4099	chr12	111594736	111595444	+	111594736	111595396	A3SS	ENSMUST00000075281.8	novel	0.09	6	60	6	60	n	0.06	3	49	3	49	n	0.08	6	68	6	68	n	0.13	8	55	8	55	n	0.15	12	70	12	70	y	0.27	13	36	13	36	y	0.11	10	79	10	79	n	0.03	1	35	1	35	n	0.00	0	52	0	52	n	0.06	5	75	5	75	n	0.13	10	66	10	66	n	0.21	16	60	16	60	y	ENSMUSG00000007411.17	Mark3	chr12	protein_coding	MAP/microtubule affinity regulating kinase 3
novel_NIR_4100	chr12	111606474	111613916	+	111606474	111613124	A3SS&ES	ENSMUST00000221753.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.86	6	1	6	1	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000007411.17	Mark3	chr12	protein_coding	MAP/microtubule affinity regulating kinase 3
novel_NIR_4101	chr12	111606474	111613947	+	111606474	111613124	A3SS&ES	ENSMUST00000221753.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000007411.17	Mark3	chr12	protein_coding	MAP/microtubule affinity regulating kinase 3
novel_NIR_4102	chr12	111618418	111621704	+	111621181	111621704	5pMXE	ENSMUST00000221841.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000007411.17	Mark3	chr12	protein_coding	MAP/microtubule affinity regulating kinase 3
novel_NIR_4103	chr12	111696546	111700103	+	111696546	111717621	A3SS	ENSMUST00000163220.10	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.50	2	2	2	2	y	-	-	-	-	-	-	0.50	2	2	2	2	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000037787.15	Coa8	chr12	protein_coding	cytochrome c oxidase assembly factor 8
novel_NIR_4104	chr12	111744682	111745033	+	111744541	111745033	A5SS	ENSMUST00000239017.2	novel	0.41	9	13	9	13	n	0.57	12	9	12	9	y	0.06	2	30	2	30	n	0.19	4	17	4	17	y	0.63	12	7	12	7	y	0.08	1	12	1	12	n	0.21	9	34	9	34	y	0.50	4	4	4	4	y	0.22	4	14	4	14	n	0.20	4	16	4	16	y	0.54	14	12	14	12	y	0.32	9	19	9	19	y	ENSMUSG00000021288.20	Klc1	chr12	protein_coding	kinesin light chain 1
novel_NIR_4105	chr12	111755893	111760083	+	111755893	111760771	A3SS	ENSMUST00000118471.8	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	5	0	5	0	y	ENSMUSG00000021288.20	Klc1	chr12	protein_coding	kinesin light chain 1
novel_NIR_4106	chr12	111755893	111760083	+	111755893	111772442	A3SS	ENSMUST00000134578.2	novel	0.67	4	2	4	2	y	-	-	-	-	-	-	0.75	6	2	6	2	y	-	-	-	-	-	-	0.40	2	3	2	3	y	0.33	1	2	1	2	n	0.67	2	1	2	1	y	0.50	1	1	1	1	n	0.25	2	6	2	6	y	1.00	6	0	6	0	y	1.00	1	0	1	0	n	0.56	5	4	5	4	y	ENSMUSG00000021288.20	Klc1	chr12	protein_coding	kinesin light chain 1
novel_NIR_4107	chr12	111755893	111760083	+	111755920	111760083	A5SS	ENSMUST00000120544.9	novel	0.80	4	1	4	1	y	0.00	0	5	0	5	n	0.67	6	3	6	3	y	0.00	0	4	0	4	n	0.33	2	4	2	4	y	0.11	1	8	1	8	n	0.29	2	5	2	5	y	0.50	1	1	1	1	n	0.40	2	3	2	3	y	0.86	6	1	6	1	y	0.25	1	3	1	3	n	0.71	5	2	5	2	y	ENSMUSG00000021288.20	Klc1	chr12	protein_coding	kinesin light chain 1
novel_NIR_4108	chr12	111755893	111761982	+	111755893	111760771	3pMXE	ENSMUST00000118471.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	8	0	8	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	7	0	7	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	ENSMUSG00000021288.20	Klc1	chr12	protein_coding	kinesin light chain 1
novel_NIR_4109	chr12	111755893	111761982	+	111755893	111772442	A3SS	ENSMUST00000134578.2	novel	0.50	2	2	2	2	y	-	-	-	-	-	-	0.75	6	2	6	2	y	-	-	-	-	-	-	0.73	8	3	8	3	y	0.00	0	2	0	2	n	0.80	4	1	4	1	y	0.88	7	1	7	1	y	0.25	2	6	2	6	y	1.00	5	0	5	0	y	1.00	2	0	2	0	y	0.33	2	4	2	4	y	ENSMUSG00000021288.20	Klc1	chr12	protein_coding	kinesin light chain 1
novel_NIR_4110	chr12	111755893	111761982	+	111755920	111761982	A5SS	ENSMUST00000239017.2	novel	0.25	2	6	2	6	y	0.00	0	9	0	9	n	0.43	6	8	6	8	y	0.00	0	7	0	7	n	0.35	8	15	8	15	y	0.00	0	3	0	3	n	0.19	4	17	4	17	y	0.50	7	7	7	7	y	0.22	2	7	2	7	y	0.28	5	13	5	13	y	0.13	2	13	2	13	n	0.22	2	7	2	7	y	ENSMUSG00000021288.20	Klc1	chr12	protein_coding	kinesin light chain 1
novel_NIR_4111	chr12	111757108	111760083	+	111755920	111760083	A5SS	ENSMUST00000120544.9	novel	0.00	0	1	0	1	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.60	6	4	6	4	y	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.67	2	1	2	1	y	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.57	4	3	4	3	y	0.00	0	2	0	2	n	ENSMUSG00000021288.20	Klc1	chr12	protein_coding	kinesin light chain 1
novel_NIR_4112	chr12	111757108	111772442	+	111755893	111772442	A5SS	ENSMUST00000134578.2	novel	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	4	0	4	n	ENSMUSG00000021288.20	Klc1	chr12	protein_coding	kinesin light chain 1
novel_NIR_4113	chr12	111760133	111761982	+	111755920	111761982	A5SS	ENSMUST00000239017.2	novel	0.70	14	6	14	6	y	0.62	15	9	15	9	y	0.64	14	8	14	8	y	0.61	11	7	11	7	y	0.44	12	15	12	15	y	0.70	7	3	7	3	y	0.29	7	17	7	17	y	0.59	10	7	10	7	y	0.50	7	7	7	7	y	0.59	19	13	19	13	y	0.52	14	13	14	13	y	0.67	14	7	14	7	y	ENSMUSG00000021288.20	Klc1	chr12	protein_coding	kinesin light chain 1
novel_NIR_4114	chr12	111760133	111761982	+	111760133	111760771	3pMXE	ENSMUST00000120544.9	novel	0.78	14	4	14	4	y	1.00	15	0	15	0	y	0.93	14	1	14	1	y	0.92	11	1	11	1	y	0.80	12	3	12	3	y	0.58	7	5	7	5	y	0.44	7	9	7	9	y	0.91	10	1	10	1	y	0.78	7	2	7	2	y	0.70	19	8	19	8	y	1.00	14	0	14	0	y	0.70	14	6	14	6	y	ENSMUSG00000021288.20	Klc1	chr12	protein_coding	kinesin light chain 1
novel_NIR_4115	chr12	111767854	111772442	+	111755893	111772442	A5SS	ENSMUST00000134578.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	6	0	6	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000021288.20	Klc1	chr12	protein_coding	kinesin light chain 1
novel_NIR_4116	chr12	111772823	111774267	-	111771473	111774267	A3SS	ENSMUST00000127281.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021287.13	Xrcc3	chr12	protein_coding	X-ray repair complementing defective repair in Chinese hamster cells 3
novel_NIR_4117	chr12	111772823	111774267	-	111771561	111774267	A3SS	ENSMUST00000021715.6	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.17	2	10	2	10	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000021287.13	Xrcc3	chr12	protein_coding	X-ray repair complementing defective repair in Chinese hamster cells 3
novel_NIR_4118	chr12	111781423	111789676	+	111782718	111789676	5pMXE	ENSMUST00000220616.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021286.9	Zfyve21	chr12	protein_coding	zinc finger, FYVE domain containing 21
novel_NIR_4119	chr12	111791542	111793980	+	111791542	111792010	A3SS&ES	ENSMUST00000221375.2	novel	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	1.00	6	0	6	0	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	ENSMUSG00000021286.9	Zfyve21	chr12	protein_coding	zinc finger, FYVE domain containing 21
novel_NIR_4120	chr12	111791542	111793980	+	111791542	111792013	A3SS&ES	ENSMUST00000223211.2	novel	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.75	6	2	6	2	y	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.07	1	13	1	13	n	ENSMUSG00000021286.9	Zfyve21	chr12	protein_coding	zinc finger, FYVE domain containing 21
novel_NIR_4121	chr12	111791542	111793980	+	111791542	111798475	A3SS	ENSMUST00000222843.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	1	0	1	0	n	ENSMUSG00000021286.9	Zfyve21	chr12	protein_coding	zinc finger, FYVE domain containing 21
novel_NIR_4122	chr12	111805215	111807361	-	111805215	111807391	A5SS	ENSMUST00000054815.15	novel	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	15	0	15	n	0.00	0	25	0	25	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.20	2	8	2	8	y	ENSMUSG00000021285.16	Ppp1r13b	chr12	protein_coding	protein phosphatase 1, regulatory subunit 13B
novel_NIR_4123	chr12	111838867	111877649	-	111838867	111873919	5pMXE	ENSMUST00000220927.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000021285.16	Ppp1r13b	chr12	protein_coding	protein phosphatase 1, regulatory subunit 13B
novel_NIR_4124	chr12	111838867	111877649	-	111838867	111874296	5pMXE	ENSMUST00000054815.15	novel	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.50	3	3	3	3	y	ENSMUSG00000021285.16	Ppp1r13b	chr12	protein_coding	protein phosphatase 1, regulatory subunit 13B
novel_NIR_4125	chr12	111910481	111910591	-	111909645	111910591	A3SS	ENSMUST00000222845.2	novel	0.00	0	2	0	2	n	0.10	1	9	1	9	n	0.00	0	10	0	10	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.20	2	8	2	8	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.25	2	6	2	6	y	0.00	0	1	0	1	n	ENSMUSG00000113769.2	5033406O09Rik	chr12	lncRNA	RIKEN cDNA 5033406O09 gene
novel_NIR_4126	chr12	111910481	111910591	-	111910431	111910591	A3SS	ENSMUST00000221314.2	novel	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.00	0	6	0	6	n	0.17	1	5	1	5	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.40	2	3	2	3	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.18	2	9	2	9	y	0.00	0	1	0	1	n	ENSMUSG00000113769.2	5033406O09Rik	chr12	lncRNA	RIKEN cDNA 5033406O09 gene
novel_NIR_4127	chr12	111917751	111919515	+	111919434	111919515	A5SS	ENSMUST00000221818.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000113088.2	Gm36757	chr12	lncRNA	predicted gene, 36757
novel_NIR_4128	chr12	111929787	111933017	-	111929787	111933128	A5SS	ENSMUST00000223191.2	novel	0.33	1	2	1	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	0.00	0	4	0	4	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.62	5	3	5	3	y	0.33	1	2	1	2	n	0.88	7	1	7	1	y	ENSMUSG00000021290.7	Atp5mpl	chr12	protein_coding	ATP synthase membrane subunit 6.8PL
novel_NIR_4129	chr12	111929787	111933026	-	111929787	111933028	A5SS	ENSMUST00000222874.2	novel	0.08	4	46	4	46	n	0.06	4	65	4	65	n	0.19	4	17	4	17	y	0.06	3	47	3	47	n	0.01	1	72	1	72	n	0.12	3	23	3	23	n	0.10	8	69	8	69	n	0.00	0	26	0	26	n	0.00	0	37	0	37	n	0.04	3	64	3	64	n	0.05	3	54	3	54	n	0.07	5	63	5	63	n	ENSMUSG00000021290.7	Atp5mpl	chr12	protein_coding	ATP synthase membrane subunit 6.8PL
novel_NIR_4130	chr12	111929787	111933026	-	111929787	111933128	A5SS	ENSMUST00000223191.2	novel	0.67	4	2	4	2	y	0.57	4	3	4	3	y	1.00	4	0	4	0	y	0.50	3	3	3	3	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.67	8	4	8	4	y	-	-	-	-	-	-	-	-	-	-	-	-	0.50	3	3	3	3	y	0.60	3	2	3	2	y	0.83	5	1	5	1	y	ENSMUSG00000021290.7	Atp5mpl	chr12	protein_coding	ATP synthase membrane subunit 6.8PL
novel_NIR_4131	chr12	112078734	112080702	+	112078734	112080466	A3SS&ES	ENSMUST00000220719.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000037686.7	Aspg	chr12	protein_coding	asparaginase
novel_NIR_4132	chr12	112078734	112080814	+	112078734;112080601	112080466;112080814	ES	ENSMUST00000220719.2	novel	0.39	6	9.5	6	0;19	y	0.15	2	11.5	2	1;22	y	0.59	5	3.5	5	0;7	y	0.26	5	14.5	5	0;29	y	0.48	15	16.5	15	0;33	y	0.00	0	2.5	0	0;5	n	0.34	7	13.5	7	0;27	y	0.00	0	5.0	0	0;10	n	0.29	3	7.5	3	0;15	y	0.31	4	9.0	4	0;18	y	0.11	1	8.5	1	0;17	n	0.49	10	10.5	10	2;19	y	ENSMUSG00000037686.7	Aspg	chr12	protein_coding	asparaginase
novel_NIR_4133	chr12	112078734	112082001	+	112079498	112082001	5pMXE	ENSMUST00000223184.2	novel	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	9	0	9	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	7	0	7	0	y	ENSMUSG00000037686.7	Aspg	chr12	protein_coding	asparaginase
novel_NIR_4134	chr12	112078933	112080466	+	112078734	112080466	A5SS	ENSMUST00000220719.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000037686.7	Aspg	chr12	protein_coding	asparaginase
novel_NIR_4135	chr12	112079526	112079856	+	112079526	112082001	A3SS	ENSMUST00000223412.2	novel	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.17	2	10	2	10	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	ENSMUSG00000037686.7	Aspg	chr12	protein_coding	asparaginase
novel_NIR_4136	chr12	112079526	112080466	+	112078734	112080466	A5SS	ENSMUST00000220719.2	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	6	0	6	0	y	1.00	6	0	6	0	y	1.00	1	0	1	0	n	0.60	3	2	3	2	y	ENSMUSG00000037686.7	Aspg	chr12	protein_coding	asparaginase
novel_NIR_4137	chr12	112079526	112080466	+	112079526	112082001	A3SS	ENSMUST00000223412.2	novel	0.33	2	4	2	4	y	0.00	0	6	0	6	n	0.33	1	2	1	2	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	1.00	3	0	3	0	y	0.29	4	10	4	10	y	0.29	2	5	2	5	y	0.55	6	5	6	5	y	0.35	6	11	6	11	y	0.11	1	8	1	8	n	0.25	3	9	3	9	y	ENSMUSG00000037686.7	Aspg	chr12	protein_coding	asparaginase
novel_NIR_4138	chr12	112079526	112080702	+	112079526	112082001	A3SS	ENSMUST00000223412.2	novel	0.00	0	4	0	4	n	0.25	2	6	2	6	y	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	ENSMUSG00000037686.7	Aspg	chr12	protein_coding	asparaginase
novel_NIR_4139	chr12	112079526	112080730	+	112079526	112082001	A3SS	ENSMUST00000223412.2	novel	0.43	3	4	3	4	y	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.47	9	10	9	10	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.53	9	8	9	8	y	0.00	0	9	0	9	n	ENSMUSG00000037686.7	Aspg	chr12	protein_coding	asparaginase
novel_NIR_4140	chr12	112079526	112080733	+	112079526	112082001	A3SS	ENSMUST00000223412.2	novel	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.23	3	10	3	10	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.27	4	11	4	11	y	0.00	0	8	0	8	n	0.00	0	9	0	9	n	ENSMUSG00000037686.7	Aspg	chr12	protein_coding	asparaginase
novel_NIR_4141	chr12	112079526	112080816	+	112079526	112082001	A3SS	ENSMUST00000223412.2	novel	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.23	3	10	3	10	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.39	7	11	7	11	y	0.00	0	8	0	8	n	0.00	0	9	0	9	n	ENSMUSG00000037686.7	Aspg	chr12	protein_coding	asparaginase
novel_NIR_4142	chr12	112079526	112080829	+	112079526	112082001	A3SS	ENSMUST00000223412.2	novel	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.17	2	10	2	10	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	ENSMUSG00000037686.7	Aspg	chr12	protein_coding	asparaginase
novel_NIR_4143	chr12	112080601	112080702	+	112080601	112080814	A3SS	ENSMUST00000220719.2	novel	0.21	5	19	5	19	y	0.00	0	22	0	22	n	0.30	3	7	3	7	y	0.00	0	29	0	29	n	0.00	0	33	0	33	n	0.00	0	5	0	5	n	0.07	2	27	2	27	n	0.00	0	10	0	10	n	0.06	1	15	1	15	n	0.00	0	18	0	18	n	0.11	2	17	2	17	n	0.00	0	19	0	19	n	ENSMUSG00000037686.7	Aspg	chr12	protein_coding	asparaginase
novel_NIR_4144	chr12	112080601	112080721	+	112080601	112080814	A3SS	ENSMUST00000220719.2	novel	0.10	2	19	2	19	n	0.12	3	22	3	22	n	0.12	1	7	1	7	n	0.03	1	29	1	29	n	0.15	6	33	6	33	y	0.00	0	5	0	5	n	0.00	0	27	0	27	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	18	0	18	n	0.00	0	17	0	17	n	0.21	5	19	5	19	y	ENSMUSG00000037686.7	Aspg	chr12	protein_coding	asparaginase
novel_NIR_4145	chr12	112080601	112080730	+	112080601	112080814	A3SS	ENSMUST00000220719.2	novel	0.10	2	19	2	19	n	0.19	5	22	5	22	y	0.53	8	7	8	7	y	0.09	3	29	3	29	n	0.15	6	33	6	33	y	0.29	2	5	2	5	y	0.00	0	27	0	27	n	0.29	4	10	4	10	y	0.17	3	15	3	15	y	0.31	8	18	8	18	y	0.15	3	17	3	17	y	0.10	2	19	2	19	n	ENSMUSG00000037686.7	Aspg	chr12	protein_coding	asparaginase
novel_NIR_4146	chr12	112080601	112080733	+	112080601	112080814	A3SS	ENSMUST00000220719.2	novel	0.00	0	19	0	19	n	0.00	0	22	0	22	n	0.22	2	7	2	7	y	0.03	1	29	1	29	n	0.03	1	33	1	33	n	0.00	0	5	0	5	n	0.04	1	27	1	27	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.05	1	18	1	18	n	0.00	0	17	0	17	n	0.00	0	19	0	19	n	ENSMUSG00000037686.7	Aspg	chr12	protein_coding	asparaginase
novel_NIR_4147	chr12	112089473	112093079	+	112089473	112091244	A3SS&ES	ENSMUST00000222970.2	novel	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000037686.7	Aspg	chr12	protein_coding	asparaginase
novel_NIR_4148	chr12	112089473;112089853	112089729;112091244	+	112089473	112091244	cassetteExon	ENSMUST00000222970.2	novel	0.13	1.5	10	0;3	10	n	0.48	5.5	6	0;11	6	n	0.00	0.0	6	0;0	6	n	0.52	6.5	6	0;13	6	n	0.45	5.0	6	0;10	6	n	0.00	0.0	1	0;0	1	n	0.48	5.5	6	3;8	6	y	-	-	-	-	-	-	0.50	3.0	3	0;6	3	n	0.00	0.0	4	0;0	4	n	0.00	0.0	2	0;0	2	n	0.00	0.0	4	0;0	4	n	ENSMUSG00000037686.7	Aspg	chr12	protein_coding	asparaginase
novel_NIR_4149	chr12	112089473;112089883	112089729;112091244	+	112089473	112091244	cassetteExon	ENSMUST00000222970.2	novel	0.00	0.0	10	0;0	10	n	0.00	0.0	6	0;0	6	n	0.00	0.0	6	0;0	6	n	0.00	0.0	6	0;0	6	n	0.00	0.0	6	0;0	6	n	0.00	0.0	1	0;0	1	n	0.40	4.0	6	3;5	6	y	-	-	-	-	-	-	0.00	0.0	3	0;0	3	n	0.00	0.0	4	0;0	4	n	0.00	0.0	2	0;0	2	n	0.00	0.0	4	0;0	4	n	ENSMUSG00000037686.7	Aspg	chr12	protein_coding	asparaginase
novel_NIR_4150	chr12	112089853	112091244	+	112089473	112091244	A5SS	ENSMUST00000222970.2	novel	0.23	3	10	3	10	y	0.65	11	6	11	6	y	0.00	0	6	0	6	n	0.68	13	6	13	6	y	0.62	10	6	10	6	y	0.00	0	1	0	1	n	0.57	8	6	8	6	n	-	-	-	-	-	-	0.67	6	3	6	3	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000037686.7	Aspg	chr12	protein_coding	asparaginase
novel_NIR_4151	chr12	112090477	112091244	+	112089473	112091244	A5SS	ENSMUST00000222970.2	novel	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.43	3	4	3	4	y	ENSMUSG00000037686.7	Aspg	chr12	protein_coding	asparaginase
novel_NIR_4152	chr12	112090788	112091244	+	112089473	112091244	A5SS	ENSMUST00000222970.2	novel	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.33	3	6	3	6	y	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.25	2	6	2	6	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000037686.7	Aspg	chr12	protein_coding	asparaginase
novel_NIR_4153	chr12	112564071	112566428	+	112555969	112566428	A5SS	ENSMUST00000220786.2	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	0.50	2	2	2	2	y	ENSMUSG00000037679.10	Inf2	chr12	protein_coding	inverted formin, FH2 and WH2 domain containing
novel_NIR_4154	chr12	112564510	112566428	+	112555969	112566428	A5SS	ENSMUST00000220786.2	novel	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.78	7	2	7	2	y	ENSMUSG00000037679.10	Inf2	chr12	protein_coding	inverted formin, FH2 and WH2 domain containing
novel_NIR_4155	chr12	112578470	112578537	+	112578470	112581329	A3SS	ENSMUST00000222275.2	novel	0.00	0	3	0	3	n	0.33	4	8	4	8	y	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000037679.10	Inf2	chr12	protein_coding	inverted formin, FH2 and WH2 domain containing
novel_NIR_4156	chr12	112578470	112578555	+	112578470	112581329	A3SS	ENSMUST00000222275.2	novel	0.90	26	3	26	3	y	0.82	36	8	36	8	y	1.00	8	0	8	0	y	0.93	43	3	43	3	y	0.94	61	4	61	4	y	0.82	18	4	18	4	y	0.94	48	3	48	3	y	0.96	27	1	27	1	y	0.87	27	4	27	4	y	0.89	50	6	50	6	y	0.95	38	2	38	2	y	0.86	25	4	25	4	y	ENSMUSG00000037679.10	Inf2	chr12	protein_coding	inverted formin, FH2 and WH2 domain containing
novel_NIR_4157	chr12	112578470	112578979	+	112578470	112578982	A3SS	ENSMUST00000101029.4	novel	0.08	11	124	11	124	n	0.08	11	129	11	129	n	0.15	13	76	13	76	y	0.10	14	120	14	120	n	0.06	11	174	11	174	n	0.05	2	40	2	40	n	0.12	21	151	21	151	n	0.05	3	56	3	56	n	0.11	12	94	12	94	n	0.12	19	134	19	134	n	0.12	11	83	11	83	n	0.07	13	165	13	165	n	ENSMUSG00000037679.10	Inf2	chr12	protein_coding	inverted formin, FH2 and WH2 domain containing
novel_NIR_4158	chr12	112578470	112578979	+	112578470	112581329	A3SS	ENSMUST00000222275.2	novel	0.79	11	3	11	3	y	0.58	11	8	11	8	y	1.00	13	0	13	0	y	0.82	14	3	14	3	y	0.73	11	4	11	4	y	0.33	2	4	2	4	y	0.88	21	3	21	3	y	0.75	3	1	3	1	y	0.75	12	4	12	4	y	0.76	19	6	19	6	y	0.85	11	2	11	2	y	0.76	13	4	13	4	y	ENSMUSG00000037679.10	Inf2	chr12	protein_coding	inverted formin, FH2 and WH2 domain containing
novel_NIR_4159	chr12	112578470;112578639	112578555;112578982	+	112578470	112578982	cassetteExon	ENSMUST00000101029.4	novel	0.19	30.0	124	26;34	124	y	0.18	28.5	129	36;21	129	y	0.05	4.0	76	8;0	76	n	0.22	33.5	120	43;24	120	y	0.21	45.0	174	61;29	174	y	0.25	13.5	40	18;9	40	y	0.21	39.0	151	48;30	151	y	0.25	19.0	56	27;11	56	y	0.19	22.5	94	27;18	94	y	0.21	35.0	134	50;20	134	y	0.23	24.5	83	38;11	83	y	0.09	15.5	165	25;6	165	n	ENSMUSG00000037679.10	Inf2	chr12	protein_coding	inverted formin, FH2 and WH2 domain containing
novel_NIR_4160	chr12	112611518	112613299	+	112611518	112614259	A3SS	ENSMUST00000109755.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	ENSMUSG00000064326.14	Siva1	chr12	protein_coding	SIVA1, apoptosis-inducing factor
novel_NIR_4161	chr12	112613463	112614259	+	112611518	112614259	A5SS	ENSMUST00000109755.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.33	1	2	1	2	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	ENSMUSG00000064326.14	Siva1	chr12	protein_coding	SIVA1, apoptosis-inducing factor
novel_NIR_4162	chr12	112646146	112646361	+	112646208	112646361	A5SS	ENSMUST00000174780.2	novel	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000037638.6	Zbtb42	chr12	protein_coding	zinc finger and BTB domain containing 42
novel_NIR_4163	chr12	112688411	112691058	+	112688059	112691058	A5SS	ENSMUST00000220942.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.50	3	3	3	3	y	-	-	-	-	-	-	0.75	6	2	6	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000072825.12	Cep170b	chr12	protein_coding	centrosomal protein 170B
novel_NIR_4164	chr12	112688411	112691058	+	112688816	112691058	5pMXE	ENSMUST00000101018.11	novel	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.23	3	10	3	10	y	0.00	0	5	0	5	n	0.43	6	8	6	8	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.33	1	2	1	2	n	0.00	0	7	0	7	n	ENSMUSG00000072825.12	Cep170b	chr12	protein_coding	centrosomal protein 170B
novel_NIR_4165	chr12	112902154	112902415	-	112898670	112902415	A3SS	ENSMUST00000221497.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.73	8	3	8	3	y	0.00	0	5	0	5	n	ENSMUSG00000002804.5	Nudt14	chr12	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 14
novel_NIR_4166	chr12	112902154	112902415	-	112902177	112902415	A3SS	ENSMUST00000002881.5	novel	0.00	0	12	0	12	n	0.00	0	13	0	13	n	-	-	-	-	-	-	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	20	0	20	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	16	0	16	n	0.42	8	11	8	11	y	0.00	0	12	0	12	n	ENSMUSG00000002804.5	Nudt14	chr12	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 14
novel_NIR_4167	chr12	112902165	112902415	-	112898670	112902415	A3SS	ENSMUST00000221497.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	1.00	3	0	3	0	y	0.82	9	2	9	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.67	6	3	6	3	y	0.00	0	5	0	5	n	ENSMUSG00000002804.5	Nudt14	chr12	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 14
novel_NIR_4168	chr12	112902165	112902415	-	112902177	112902415	A3SS	ENSMUST00000002881.5	novel	0.00	0	12	0	12	n	0.00	0	13	0	13	n	-	-	-	-	-	-	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.43	3	4	3	4	y	0.31	9	20	9	20	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	16	0	16	n	0.35	6	11	6	11	y	0.00	0	12	0	12	n	ENSMUSG00000002804.5	Nudt14	chr12	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 14
novel_NIR_4169	chr12	112929638	112932885	-	112929612	112932885	A3SS	ENSMUST00000011302.9	novel	0.24	10	32	10	32	y	0.39	11	17	11	17	y	0.19	6	26	6	26	y	0.16	6	31	6	31	y	0.16	11	56	11	56	y	0.21	5	19	5	19	y	0.29	15	36	15	36	y	0.38	12	20	12	20	y	0.33	13	27	13	27	y	0.17	10	50	10	50	y	0.26	12	34	12	34	y	0.23	14	47	14	47	y	ENSMUSG00000011158.9	Brf1	chr12	protein_coding	BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit
novel_NIR_4170	chr12	112978302	113001670	+	112978302	112986762	A3SS&ES	ENSMUST00000222406.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021143.11	Pacs2	chr12	protein_coding	phosphofurin acidic cluster sorting protein 2
novel_NIR_4171	chr12	112978302	113001670	+	112978302	113007846	A3SS	ENSMUST00000223502.2	novel	0.00	0	6	0	6	n	0.12	1	7	1	7	n	0.00	0	3	0	3	n	0.12	1	7	1	7	n	0.23	3	10	3	10	y	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	ENSMUSG00000021143.11	Pacs2	chr12	protein_coding	phosphofurin acidic cluster sorting protein 2
novel_NIR_4172	chr12	113007933	113008586	+	113007933	113010649	A3SS	ENSMUST00000220541.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021143.11	Pacs2	chr12	protein_coding	phosphofurin acidic cluster sorting protein 2
novel_NIR_4173	chr12	113027062	113027455	+	113027062	113027450	A3SS	ENSMUST00000223502.2	novel	0.00	0	23	0	23	n	0.00	0	25	0	25	n	0.00	0	2	0	2	n	0.05	1	18	1	18	n	0.00	0	28	0	28	n	0.20	3	12	3	12	y	0.00	0	25	0	25	n	0.00	0	17	0	17	n	0.07	1	13	1	13	n	0.06	2	32	2	32	n	0.00	0	17	0	17	n	0.04	1	25	1	25	n	ENSMUSG00000021143.11	Pacs2	chr12	protein_coding	phosphofurin acidic cluster sorting protein 2
novel_NIR_4174	chr12	113096957	113097116	+	113096957	113097161	A3SS	ENSMUST00000009099.13	novel	0.00	0	30	0	30	n	0.00	0	47	0	47	n	0.10	6	56	6	56	n	0.07	3	43	3	43	n	0.02	1	54	1	54	n	0.06	2	32	2	32	n	0.02	1	57	1	57	n	0.00	0	27	0	27	n	0.00	0	37	0	37	n	0.11	9	76	9	76	n	0.05	3	52	3	52	n	0.15	11	60	11	60	y	ENSMUSG00000021144.15	Mta1	chr12	protein_coding	metastasis associated 1
novel_NIR_4175	chr12	113096957	113097116	+	113096957	113099417	A3SS	ENSMUST00000109727.9	novel	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.32	6	13	6	13	n	0.19	3	13	3	13	n	0.20	1	4	1	4	n	0.67	2	1	2	1	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.39	9	14	9	14	y	0.30	3	7	3	7	n	0.41	11	16	11	16	n	ENSMUSG00000021144.15	Mta1	chr12	protein_coding	metastasis associated 1
novel_NIR_4176	chr12	11312594	11315301	-	11312594	11315588	A5SS	ENSMUST00000166117.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000051235.11	Gen1	chr12	protein_coding	GEN1, Holliday junction 5' flap endonuclease
novel_NIR_4177	chr12	11312594	11315301	-	11312594	11315722	A5SS	ENSMUST00000219600.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000051235.11	Gen1	chr12	protein_coding	GEN1, Holliday junction 5' flap endonuclease
novel_NIR_4178	chr12	116011486	116011679	+	116011486	116018342	A3SS	ENSMUST00000073551.6	novel	0.00	0	6	0	6	n	0.08	1	11	1	11	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	17	0	17	n	-	-	-	-	-	-	0.05	1	20	1	20	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	19	0	19	n	0.20	3	12	3	12	y	0.38	3	5	3	5	n	ENSMUSG00000042063.12	Zfp386	chr12	protein_coding	zinc finger protein 386 (Kruppel-like)
novel_NIR_4179	chr12	116011486;116011843	116011679;116018342	+	116011486	116018342	cassetteExon	ENSMUST00000073551.6	novel	0.33	3.0	6	0;6	6	n	0.04	0.5	11	1;0	11	n	0.39	6.5	10	0;13	10	n	0.20	2.0	8	0;4	8	n	0.19	4.0	17	0;8	17	n	1.00	2.5	0	0;5	0	n	0.15	3.5	20	1;6	20	n	0.38	3.0	5	0;6	5	n	0.13	1.5	10	0;3	10	n	0.19	4.5	19	0;9	19	n	0.11	1.5	12	3;0	12	n	0.41	3.5	5	3;4	5	y	ENSMUSG00000042063.12	Zfp386	chr12	protein_coding	zinc finger protein 386 (Kruppel-like)
novel_NIR_4180	chr12	116011843	116018342	+	116011486	116018342	A5SS	ENSMUST00000073551.6	novel	0.50	6	6	6	6	y	0.00	0	11	0	11	n	0.57	13	10	13	10	y	0.33	4	8	4	8	y	0.32	8	17	8	17	y	1.00	5	0	5	0	y	0.23	6	20	6	20	n	0.55	6	5	6	5	y	0.23	3	10	3	10	y	0.32	9	19	9	19	y	0.00	0	12	0	12	n	0.44	4	5	4	5	n	ENSMUSG00000042063.12	Zfp386	chr12	protein_coding	zinc finger protein 386 (Kruppel-like)
novel_NIR_4181	chr12	116018437	116022525	+	116018468	116022525	A5SS	ENSMUST00000073551.6	novel	0.44	4	5	4	5	y	0.23	3	10	3	10	y	0.00	0	15	0	15	n	0.00	0	15	0	15	n	0.10	2	19	2	19	n	0.12	2	15	2	15	n	0.06	2	32	2	32	n	0.00	0	6	0	6	n	0.23	3	10	3	10	y	0.30	6	14	6	14	y	0.00	0	12	0	12	n	0.08	1	12	1	12	n	ENSMUSG00000042063.12	Zfp386	chr12	protein_coding	zinc finger protein 386 (Kruppel-like)
novel_NIR_4182	chr12	116018437	116022525	+	116018573	116022525	A5SS	ENSMUST00000183125.2	novel	1.00	4	0	4	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000042063.12	Zfp386	chr12	protein_coding	zinc finger protein 386 (Kruppel-like)
novel_NIR_4183	chr12	116018464	116022525	+	116018468	116022525	A5SS	ENSMUST00000073551.6	novel	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.06	1	15	1	15	n	0.00	0	15	0	15	n	0.00	0	19	0	19	n	0.00	0	15	0	15	n	0.00	0	32	0	32	n	0.33	3	6	3	6	y	0.00	0	10	0	10	n	0.07	1	14	1	14	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	ENSMUSG00000042063.12	Zfp386	chr12	protein_coding	zinc finger protein 386 (Kruppel-like)
novel_NIR_4184	chr12	116018464	116022525	+	116018573	116022525	A5SS	ENSMUST00000183125.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000042063.12	Zfp386	chr12	protein_coding	zinc finger protein 386 (Kruppel-like)
novel_NIR_4185	chr12	116177125	116180101	-	116177125	116177302	5pMXE	ENSMUST00000221748.2	novel	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.00	0	22	0	22	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	17	0	17	n	0.00	0	17	0	17	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.05	1	18	1	18	n	0.33	4	8	4	8	y	ENSMUSG00000042050.9	Dync2i1	chr12	protein_coding	dynein 2 intermediate chain 1
novel_NIR_4186	chr12	116177125	116180101	-	116177125;116177401	116177302;116180101	ES	ENSMUST00000039349.8	novel	0.00	0	6.5	0	6;7	n	0.00	0	13.0	0	16;10	n	0.00	0	19.5	0	22;17	n	0.00	0	9.5	0	12;7	n	0.00	0	11.0	0	10;12	n	0.00	0	11.0	0	17;5	n	0.00	0	14.0	0	17;11	n	0.00	0	8.5	0	4;13	n	0.00	0	10.5	0	11;10	n	0.00	0	9.5	0	12;7	n	0.06	1	14.5	1	18;11	n	0.33	4	8.0	4	8;8	y	ENSMUSG00000042050.9	Dync2i1	chr12	protein_coding	dynein 2 intermediate chain 1
novel_NIR_4187	chr12	116311934;116313863	116313762;116320732	+	116311934;116317509	116317447;116320732	MXE	ENSMUST00000223181.2	novel	0.00	0.0	0.5	0;0	1;0	n	-	-	-	-	-	-	0.00	0.0	0.5	0;0	0;1	n	0.00	0.0	0.5	0;0	1;0	n	0.00	0.0	3.5	0;0	3;4	n	0.00	0.0	1.0	0;0	0;2	n	1.00	3.0	0.0	4;2	0;0	y	-	-	-	-	-	-	0.00	0.0	0.5	0;0	1;0	n	0.00	0.0	1.0	0;0	0;2	n	0.00	0.0	1.5	0;0	1;2	n	-	-	-	-	-	-	ENSMUSG00000021171.9	Esyt2	chr12	protein_coding	extended synaptotagmin-like protein 2
novel_NIR_4188	chr12	116311934;116313863	116313762;116320732	+	116311934;116319705	116317447;116320732	MXE	ENSMUST00000220720.2	novel	0.00	0.0	0.5	0;0	1;0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0.0	0.5	0;0	1;0	n	0.00	0.0	1.5	0;0	3;0	n	0.00	0.0	0.5	0;0	0;1	n	1.00	3.0	0.0	4;2	0;0	y	0.00	0.0	0.5	0;0	0;1	n	0.00	0.0	0.5	0;0	1;0	n	-	-	-	-	-	-	0.00	0.0	0.5	0;0	1;0	n	-	-	-	-	-	-	ENSMUSG00000021171.9	Esyt2	chr12	protein_coding	extended synaptotagmin-like protein 2
novel_NIR_4189	chr12	117481373	117481630	+	117480523	117481630	A5SS	ENSMUST00000109691.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041992.10	Rapgef5	chr12	protein_coding	Rap guanine nucleotide exchange factor (GEF) 5
novel_NIR_4190	chr12	118263893	118264434	-	118263927	118264434	A3SS	ENSMUST00000026367.11	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000025323.11	Sp4	chr12	protein_coding	trans-acting transcription factor 4
novel_NIR_4191	chr12	12990487	12991289	-	12990487	12991637	A5SS	ENSMUST00000043396.15	novel	0.00	0	3	0	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000037169.16	Mycn	chr12	protein_coding	v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived
novel_NIR_4192	chr12	13491581	13491860	+	13491581	13491863	A3SS	ENSMUST00000042953.10	novel	0.59	10	7	10	7	y	0.18	2	9	2	9	y	0.58	38	27	38	27	y	0.67	12	6	12	6	y	0.51	22	21	22	21	y	0.59	20	14	20	14	y	0.54	15	13	15	13	y	0.45	10	12	10	12	y	0.41	12	17	12	17	y	0.39	11	17	11	17	y	0.55	17	14	17	14	y	0.62	18	11	18	11	y	ENSMUSG00000020576.11	Nbas	chr12	protein_coding	neuroblastoma amplified sequence
novel_NIR_4193	chr12	13608752	13610835	+	13608752	13610838	A3SS	ENSMUST00000042953.10	novel	0.02	1	48	1	48	n	0.10	4	36	4	36	n	0.14	15	94	15	94	n	0.06	3	46	3	46	n	0.06	5	75	5	75	n	0.10	6	52	6	52	n	0.04	2	45	2	45	n	0.10	4	38	4	38	n	0.06	3	49	3	49	n	0.18	11	50	11	50	y	0.05	3	53	3	53	n	0.02	1	43	1	43	n	ENSMUSG00000020576.11	Nbas	chr12	protein_coding	neuroblastoma amplified sequence
novel_NIR_4194	chr12	16621260	16623661	-	16618520	16623661	A3SS	ENSMUST00000221230.2	novel	0.17	4	19	4	19	y	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000020593.17	Lpin1	chr12	protein_coding	lipin 1
novel_NIR_4195	chr12	16634652	16639499	-	16630905	16639499	A3SS	ENSMUST00000221146.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020593.17	Lpin1	chr12	protein_coding	lipin 1
novel_NIR_4196	chr12	16634652	16639499	-	16634652	16639719	A5SS	ENSMUST00000222989.2	novel	0.30	3	7	3	7	y	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000020593.17	Lpin1	chr12	protein_coding	lipin 1
novel_NIR_4197	chr12	16970012	16976940	+	16945331	16976940	A5SS	ENSMUST00000020904.8	novel	0.29	2	5	2	5	y	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000020580.11	Rock2	chr12	protein_coding	Rho-associated coiled-coil containing protein kinase 2
novel_NIR_4198	chr12	16979035	16984242	+	16979035	16990404	A3SS	ENSMUST00000020904.8	novel	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.24	4	13	4	13	y	0.33	1	2	1	2	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.20	1	4	1	4	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	ENSMUSG00000020580.11	Rock2	chr12	protein_coding	Rho-associated coiled-coil containing protein kinase 2
novel_NIR_4199	chr12	16985319	16990404	+	16979035	16990404	A5SS	ENSMUST00000020904.8	novel	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.00	0	2	0	2	n	0.15	2	11	2	11	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	ENSMUSG00000020580.11	Rock2	chr12	protein_coding	Rho-associated coiled-coil containing protein kinase 2
novel_NIR_4200	chr12	17028103;17032748	17032652;17034639	+	17028103	17034639	cassetteExon	ENSMUST00000020904.8	novel	0.00	0.0	20	0;0	20	n	0.00	0.0	11	0;0	11	n	0.00	0.0	37	0;0	37	n	0.00	0.0	14	0;0	14	n	0.00	0.0	34	0;0	34	n	0.00	0.0	20	0;0	20	n	0.19	7.5	32	5;10	32	y	0.00	0.0	24	0;0	24	n	0.00	0.0	20	0;0	20	n	0.00	0.0	29	0;0	29	n	0.00	0.0	23	0;0	23	n	0.00	0.0	25	0;0	25	n	ENSMUSG00000020580.11	Rock2	chr12	protein_coding	Rho-associated coiled-coil containing protein kinase 2
novel_NIR_4201	chr12	17394549	17398283	-	17394549;17395999	17395961;17398283	ES	ENSMUST00000221894.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000114024.2	Gm46336	chr12	lncRNA	predicted gene, 46336
novel_NIR_4202	chr12	17595169	17595798	+	17595169	17597186	A3SS	ENSMUST00000222617.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000011179.9	Odc1	chr12	protein_coding	ornithine decarboxylase, structural 1
novel_NIR_4203	chr12	17741047	17817215	+	17741047	17836148	A3SS	ENSMUST00000071858.5	novel	0.39	11	17	11	17	y	0.00	0	20	0	20	n	0.15	4	22	4	22	y	0.00	0	11	0	11	n	0.21	6	23	6	23	y	0.44	4	5	4	5	y	0.48	10	11	10	11	y	0.29	5	12	5	12	y	0.38	6	10	6	10	y	0.42	10	14	10	14	y	0.44	8	10	8	10	y	0.22	2	7	2	7	y	ENSMUSG00000071379.3	Hpcal1	chr12	protein_coding	hippocalcin-like 1
novel_NIR_4204	chr12	17741047	17817215	+	17778309	17817215	5pMXE	ENSMUST00000222944.2	novel	1.00	11	0	11	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	4	0	4	0	y	1.00	10	0	10	0	y	1.00	5	0	5	0	y	1.00	6	0	6	0	y	1.00	10	0	10	0	y	1.00	8	0	8	0	y	1.00	2	0	2	0	y	ENSMUSG00000071379.3	Hpcal1	chr12	protein_coding	hippocalcin-like 1
novel_NIR_4205	chr12	17950787	17950988	+	17950787	18111969	A3SS	ENSMUST00000221149.2	novel	1.00	15	0	15	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.88	7	1	7	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000113642.2	Gm49329	chr12	transcribed_unprocessed_pseudogene	predicted gene, 49329
novel_NIR_4206	chr12	20855682	20864726	-	20855682	20865347	A5SS	ENSMUST00000189625.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000099759.2	1700030C10Rik	chr12	lncRNA	RIKEN cDNA 1700030C10 gene
novel_NIR_4207	chr12	20855682	20865275	-	20855682	20865347	A5SS	ENSMUST00000189625.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	ENSMUSG00000099759.2	1700030C10Rik	chr12	lncRNA	RIKEN cDNA 1700030C10 gene
novel_NIR_4208	chr12	20946732	20952271	-	20927096	20952271	A3SS	ENSMUST00000144811.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	4	0	4	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000069755.6	Zfp125	chr12	transcribed_unprocessed_pseudogene	zinc finger protein 125
novel_NIR_4209	chr12	21094831	21098912	+	21094831	21098191	3pMXE	ENSMUST00000174304.4	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000092229.4	Gm5977	chr12	transcribed_unprocessed_pseudogene	predicted gene 5977
novel_NIR_4210	chr12	21094831	21098912	+	21094831	21126308	A3SS	ENSMUST00000174530.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000052632.17	Asap2	chr12	protein_coding	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
novel_NIR_4211	chr12	21263226	21263880	+	21263226	21264363	A3SS	ENSMUST00000064595.15	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000052632.17	Asap2	chr12	protein_coding	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
novel_NIR_4212	chr12	21263226	21263880	+	21263226	21267976	A3SS	ENSMUST00000090834.13	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.15	2	11	2	11	y	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	ENSMUSG00000052632.17	Asap2	chr12	protein_coding	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
novel_NIR_4213	chr12	21268258	21268478	+	21268258	21274306	A3SS	ENSMUST00000064595.15	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.07	1	13	1	13	n	0.33	1	2	1	2	n	0.21	3	11	3	11	y	0.00	0	14	0	14	n	0.67	6	3	6	3	y	0.00	0	9	0	9	n	-	-	-	-	-	-	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.25	1	3	1	3	n	ENSMUSG00000052632.17	Asap2	chr12	protein_coding	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
novel_NIR_4214	chr12	21268258	21268478	+	21268258	21289556	A3SS	ENSMUST00000090834.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000052632.17	Asap2	chr12	protein_coding	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
novel_NIR_4215	chr12	21336545;21338929	21338736;21340249	+	21336545;21336951	21336806;21340249	MXE	ENSMUST00000221145.2	novel	0.50	0.5	0.5	1;0	0;1	n	-	-	-	-	-	-	0.00	0.0	2.0	0;0	2;2	n	0.33	0.5	1.0	0;1	1;1	n	1.00	1.0	0.0	0;2	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0.0	0.5	0;0	0;1	n	1.00	1.0	0.0	1;1	0;0	n	1.00	2.0	0.0	2;2	0;0	y	ENSMUSG00000054309.10	Cpsf3	chr12	protein_coding	cleavage and polyadenylation specificity factor 3
novel_NIR_4216	chr12	21336545;21338929	21338736;21340249	+	21336545;21336951	21336874;21340249	MXE	ENSMUST00000221507.2	novel	0.50	0.5	0.5	1;0	0;1	n	-	-	-	-	-	-	0.00	0.0	1.0	0;0	0;2	n	0.50	0.5	0.5	0;1	0;1	n	1.00	1.0	0.0	0;2	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0.0	0.5	0;0	0;1	n	1.00	1.0	0.0	1;1	0;0	n	1.00	2.0	0.0	2;2	0;0	y	ENSMUSG00000054309.10	Cpsf3	chr12	protein_coding	cleavage and polyadenylation specificity factor 3
novel_NIR_4217	chr12	21338929	21340249	+	21336951	21340249	A5SS	ENSMUST00000221507.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	1	1	1	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	n	ENSMUSG00000054309.10	Cpsf3	chr12	protein_coding	cleavage and polyadenylation specificity factor 3
novel_NIR_4218	chr12	21366542	21367931	+	21366601	21367931	A5SS	ENSMUST00000221693.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000062054.8	Iah1	chr12	protein_coding	isoamyl acetate-hydrolyzing esterase 1 homolog
novel_NIR_4219	chr12	21367429	21367931	+	21366601	21367931	A5SS	ENSMUST00000221693.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	18	0	18	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	24	0	24	0	y	-	-	-	-	-	-	ENSMUSG00000062054.8	Iah1	chr12	protein_coding	isoamyl acetate-hydrolyzing esterase 1 homolog
novel_NIR_4220	chr12	21369932	21371232	+	21369932	21370728	3pMXE	ENSMUST00000222344.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000062054.8	Iah1	chr12	protein_coding	isoamyl acetate-hydrolyzing esterase 1 homolog
novel_NIR_4221	chr12	21369932	21373290	+	21369932	21370728	3pMXE	ENSMUST00000222344.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000062054.8	Iah1	chr12	protein_coding	isoamyl acetate-hydrolyzing esterase 1 homolog
novel_NIR_4222	chr12	21441416	21446283	-	21445652	21446283	3pMXE	ENSMUST00000140710.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000076432.14	Ywhaq	chr12	protein_coding	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta
novel_NIR_4223	chr12	24549044	24550435	+	24548648	24550435	A5SS	ENSMUST00000075954.9	novel	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.33	3	6	3	6	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	7	0	7	n	ENSMUSG00000059669.9	Taf1b	chr12	protein_coding	TATA-box binding protein associated factor, RNA polymerase I, B
novel_NIR_4224	chr12	25025086	25032236	+	25025061	25032236	A5SS	ENSMUST00000066652.7	novel	0.17	2	10	2	10	y	0.20	1	4	1	4	n	0.04	1	24	1	24	n	0.05	1	18	1	18	n	0.00	0	32	0	32	n	0.11	1	8	1	8	n	0.04	1	25	1	25	n	0.14	2	12	2	12	n	0.08	1	12	1	12	n	0.00	0	24	0	24	n	0.00	0	10	0	10	n	0.00	0	20	0	20	n	ENSMUSG00000036333.12	Kidins220	chr12	protein_coding	kinase D-interacting substrate 220
novel_NIR_4225	chr12	25039835	25040672	+	25039835	25040675	A3SS	ENSMUST00000066652.7	novel	0.05	1	18	1	18	n	0.20	1	4	1	4	n	0.11	3	25	3	25	n	0.42	11	15	11	15	y	0.48	11	12	11	12	y	0.53	8	7	8	7	y	0.42	11	15	11	15	y	0.24	9	28	9	28	y	0.00	0	11	0	11	n	0.22	8	29	8	29	y	0.11	1	8	1	8	n	0.26	11	31	11	31	y	ENSMUSG00000036333.12	Kidins220	chr12	protein_coding	kinase D-interacting substrate 220
novel_NIR_4226	chr12	25182494	25239252	+	25232001	25239252	5pMXE	ENSMUST00000222804.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000114033.2	Gm47705	chr12	lncRNA	predicted gene, 47705
novel_NIR_4227	chr12	25217456	25239252	+	25232001	25239252	5pMXE	ENSMUST00000222804.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000114033.2	Gm47705	chr12	lncRNA	predicted gene, 47705
novel_NIR_4228	chr12	26364108	26366064	-	26364108	26367648	A5SS	ENSMUST00000020971.14	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000020642.14	Rnf144a	chr12	protein_coding	ring finger protein 144A
novel_NIR_4229	chr12	26524196	26527096	+	26524196	26527005	A3SS	ENSMUST00000020969.5	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.17	2	10	2	10	y	ENSMUSG00000020638.9	Cmpk2	chr12	protein_coding	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial
novel_NIR_4230	chr12	28645087	28645243	-	28645047	28645243	A3SS	ENSMUST00000036136.9	novel	0.00	0	37	0	37	n	0.08	2	22	2	22	n	0.00	0	23	0	23	n	0.00	0	22	0	22	n	0.00	0	39	0	39	n	0.07	1	13	1	13	n	0.02	1	46	1	46	n	0.00	0	13	0	13	n	0.16	3	16	3	16	y	0.05	2	37	2	37	n	0.04	2	45	2	45	n	0.00	0	44	0	44	n	ENSMUSG00000036655.9	Colec11	chr12	protein_coding	collectin sub-family member 11
novel_NIR_4231	chr12	28645087	28645243	-	28645065	28645243	A3SS	ENSMUST00000220836.2	novel	0.00	0	10	0	10	n	0.25	2	6	2	6	y	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.08	1	11	1	11	n	0.00	0	7	0	7	n	0.50	3	3	3	3	y	0.22	2	7	2	7	y	0.12	2	14	2	14	n	0.00	0	9	0	9	n	ENSMUSG00000036655.9	Colec11	chr12	protein_coding	collectin sub-family member 11
novel_NIR_4232	chr12	28649114	28660412	-	28649114	28653220	A5SS&ES	ENSMUST00000220655.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.57	4	3	4	3	y	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000036655.9	Colec11	chr12	protein_coding	collectin sub-family member 11
novel_NIR_4233	chr12	28703195	28705584	+	28704662	28705584	5pMXE	ENSMUST00000221496.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020630.10	Rnaseh1	chr12	protein_coding	ribonuclease H1
novel_NIR_4234	chr12	28703365	28705584	+	28704662	28705584	5pMXE	ENSMUST00000221496.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020630.10	Rnaseh1	chr12	protein_coding	ribonuclease H1
novel_NIR_4235	chr12	28725660	28727777	+	28725548	28727777	A5SS	ENSMUST00000135772.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.40	4	6	4	6	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000020629.13	Adi1	chr12	protein_coding	acireductone dioxygenase 1
novel_NIR_4236	chr12	28725864	28727777	+	28725548	28727777	A5SS	ENSMUST00000135772.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	ENSMUSG00000020629.13	Adi1	chr12	protein_coding	acireductone dioxygenase 1
novel_NIR_4237	chr12	28742596	28747143	-	28742593	28747143	A3SS	ENSMUST00000168129.10	novel	0.03	1	36	1	36	n	0.06	3	46	3	46	n	0.17	7	33	7	33	y	0.02	1	40	1	40	n	0.07	3	43	3	43	n	0.00	0	20	0	20	n	0.04	2	43	2	43	n	0.00	0	26	0	26	n	0.05	2	36	2	36	n	0.15	8	46	8	46	y	0.00	0	37	0	37	n	0.04	2	43	2	43	n	ENSMUSG00000020628.17	Trappc12	chr12	protein_coding	trafficking protein particle complex 12
novel_NIR_4238	chr12	28797535	28800360	-	28797535	28800161	A5SS	ENSMUST00000020954.15	novel	0.00	0	8	0	8	n	0.29	2	5	2	5	y	0.20	2	8	2	8	y	0.07	1	14	1	14	n	0.00	0	16	0	16	n	0.25	2	6	2	6	y	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.11	1	8	1	8	n	0.08	1	11	1	11	n	0.25	1	3	1	3	n	0.00	0	12	0	12	n	ENSMUSG00000020628.17	Trappc12	chr12	protein_coding	trafficking protein particle complex 12
novel_NIR_4239	chr12	28797535	28800360	-	28797535	28800328	A5SS	ENSMUST00000168129.10	novel	0.00	0	14	0	14	n	0.40	2	3	2	3	y	0.14	2	12	2	12	n	0.05	1	20	1	20	n	0.00	0	14	0	14	n	0.12	2	14	2	14	n	0.14	2	12	2	12	n	0.00	0	13	0	13	n	0.08	1	11	1	11	n	0.05	1	19	1	19	n	0.07	1	13	1	13	n	0.00	0	15	0	15	n	ENSMUSG00000020628.17	Trappc12	chr12	protein_coding	trafficking protein particle complex 12
novel_NIR_4240	chr12	28850744	28878707	+	28816903	28878707	A5SS	ENSMUST00000221877.2	novel	0.07	2	28	2	28	n	0.05	1	19	1	19	n	0.00	0	17	0	17	n	0.15	4	22	4	22	y	0.00	0	25	0	25	n	0.00	0	14	0	14	n	0.16	4	21	4	21	y	0.10	1	9	1	9	n	0.07	1	13	1	13	n	0.07	2	28	2	28	n	0.19	5	22	5	22	y	0.00	0	24	0	24	n	ENSMUSG00000036613.9	Eipr1	chr12	protein_coding	EARP complex and GARP complex interacting protein 1
novel_NIR_4241	chr12	28850744	28878707	+	28843935	28878707	A5SS	ENSMUST00000035657.9	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.80	4	1	4	1	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	5	0	5	0	y	0.00	0	1	0	1	n	ENSMUSG00000036613.9	Eipr1	chr12	protein_coding	EARP complex and GARP complex interacting protein 1
novel_NIR_4242	chr12	28897652	28909251	+	28907390	28909251	5pMXE	ENSMUST00000221574.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036613.9	Eipr1	chr12	protein_coding	EARP complex and GARP complex interacting protein 1
novel_NIR_4243	chr12	29188338	29191956	+	29189230	29191956	5pMXE	ENSMUST00000220554.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000113986.2	Gm31333	chr12	lncRNA	predicted gene, 31333
novel_NIR_4244	chr12	29191403	29191956	+	29189230	29191956	A5SS	ENSMUST00000220554.2	novel	1.00	12	0	12	0	y	1.00	19	0	19	0	y	1.00	17	0	17	0	y	1.00	8	0	8	0	y	1.00	41	0	41	0	y	1.00	4	0	4	0	y	1.00	30	0	30	0	y	1.00	21	0	21	0	y	1.00	12	0	12	0	y	1.00	13	0	13	0	y	1.00	13	0	13	0	y	1.00	12	0	12	0	y	ENSMUSG00000113986.2	Gm31333	chr12	lncRNA	predicted gene, 31333
novel_NIR_4245	chr12	29192078	29213900	+	29192078	29213801	A3SS&ES	ENSMUST00000220554.2	novel	0.00	0	7	0	7	n	0.20	1	4	1	4	n	0.06	1	17	1	17	n	0.00	0	8	0	8	n	0.12	3	21	3	21	n	0.17	1	5	1	5	n	0.00	0	19	0	19	n	0.09	1	10	1	10	n	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.25	3	9	3	9	y	0.12	1	7	1	7	n	ENSMUSG00000113986.2	Gm31333	chr12	lncRNA	predicted gene, 31333
novel_NIR_4246	chr12	29192078	29216191	+	29192078;29213846	29213801;29216191	ES	ENSMUST00000222225.2	novel	0.00	0	7.5	0	7;8	n	0.36	2	3.5	2	4;3	y	0.00	0	13.5	0	17;10	n	0.00	0	7.5	0	8;7	n	0.19	5	21.0	5	21;21	y	0.00	0	4.0	0	5;3	n	0.08	2	24.5	2	19;30	n	0.00	0	10.0	0	10;10	n	0.07	1	14.0	1	14;14	n	0.00	0	12.0	0	12;12	n	0.24	4	13.0	4	9;17	y	0.00	0	9.0	0	7;11	n	ENSMUSG00000113986.2	Gm31333	chr12	lncRNA	predicted gene, 31333
novel_NIR_4247	chr12	29192078	29238951	+	29192078	29213801	A3SS&ES	ENSMUST00000220554.2	novel	0.12	1	7	1	7	n	0.00	0	4	0	4	n	0.11	2	17	2	17	n	0.38	5	8	5	8	y	0.19	5	21	5	21	y	0.00	0	5	0	5	n	0.27	7	19	7	19	y	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.14	2	12	2	12	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	ENSMUSG00000113986.2	Gm31333	chr12	lncRNA	predicted gene, 31333
novel_NIR_4248	chr12	29213846	29243734	+	29213846	29214760	A3SS&ES	ENSMUST00000220554.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	5	0	5	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000113986.2	Gm31333	chr12	lncRNA	predicted gene, 31333
novel_NIR_4249	chr12	29213846	29243734	+	29213846	29216191	A3SS&ES	ENSMUST00000222225.2	novel	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	21	0	21	n	0.00	0	3	0	3	n	0.00	0	30	0	30	n	0.00	0	10	0	10	n	0.18	3	14	3	14	y	0.00	0	12	0	12	n	0.00	0	17	0	17	n	0.00	0	11	0	11	n	ENSMUSG00000113986.2	Gm31333	chr12	lncRNA	predicted gene, 31333
novel_NIR_4250	chr12	29216315	29238951	+	29216315	29218118	A3SS&ES	ENSMUST00000220554.2	novel	0.25	2	6	2	6	y	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.30	10	23	10	23	y	0.00	0	5	0	5	n	0.46	12	14	12	14	y	0.33	3	6	3	6	y	0.58	7	5	7	5	y	0.15	3	17	3	17	y	0.33	3	6	3	6	y	0.00	0	9	0	9	n	ENSMUSG00000113986.2	Gm31333	chr12	lncRNA	predicted gene, 31333
novel_NIR_4251	chr12	29216315	29238951	+	29216315	29247865	A3SS	ENSMUST00000222225.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.91	10	1	10	1	y	-	-	-	-	-	-	1.00	12	0	12	0	y	1.00	3	0	3	0	y	1.00	7	0	7	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000113986.2	Gm31333	chr12	lncRNA	predicted gene, 31333
novel_NIR_4252	chr12	29218575	29234260	+	29218575	29240273	A3SS	ENSMUST00000220554.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000113986.2	Gm31333	chr12	lncRNA	predicted gene, 31333
novel_NIR_4253	chr12	29218575	29237349	+	29218575	29240273	A3SS	ENSMUST00000220554.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000113986.2	Gm31333	chr12	lncRNA	predicted gene, 31333
novel_NIR_4254	chr12	29218575	29238951	+	29218575	29240273	A3SS	ENSMUST00000220554.2	novel	1.00	5	0	5	0	y	1.00	9	0	9	0	y	1.00	13	0	13	0	y	1.00	7	0	7	0	y	1.00	21	0	21	0	y	1.00	9	0	9	0	y	1.00	16	0	16	0	y	1.00	13	0	13	0	y	1.00	10	0	10	0	y	1.00	8	0	8	0	y	1.00	10	0	10	0	y	1.00	9	0	9	0	y	ENSMUSG00000113986.2	Gm31333	chr12	lncRNA	predicted gene, 31333
novel_NIR_4255	chr12	30025561	30026911	+	30025561	30029239	A3SS	ENSMUST00000220271.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000020674.18	Pxdn	chr12	protein_coding	peroxidasin
novel_NIR_4256	chr12	30025561	30026911	+	30025561	30032293	A3SS	ENSMUST00000118321.3	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020674.18	Pxdn	chr12	protein_coding	peroxidasin
novel_NIR_4257	chr12	30276973	30286588	-	30276973;30279646	30279575;30286588	ES	ENSMUST00000142046.8	novel	0.00	0	21.0	0	17;25	n	0.07	1	13.5	1	15;12	n	0.00	0	1.0	0	2;0	n	0.07	2	28.0	2	30;26	n	0.00	0	14.5	0	13;16	n	0.00	0	1.0	0	0;2	n	0.00	0	31.5	0	39;24	n	0.20	1	4.0	1	3;5	n	0.00	0	31.5	0	32;31	n	0.17	5	24.0	5	25;23	y	0.03	1	29.5	1	29;30	n	0.00	0	37.5	0	38;37	n	ENSMUSG00000020672.15	Sntg2	chr12	protein_coding	syntrophin, gamma 2
novel_NIR_4258	chr12	30308092	30317026	-	30308092	30317030	A5SS	ENSMUST00000142046.8	novel	0.18	3	14	3	14	y	0.10	2	19	2	19	n	-	-	-	-	-	-	0.09	2	20	2	20	n	0.00	0	27	0	27	n	0.00	0	2	0	2	n	0.07	1	14	1	14	n	0.00	0	4	0	4	n	0.00	0	19	0	19	n	0.05	2	36	2	36	n	0.00	0	24	0	24	n	0.12	4	29	4	29	n	ENSMUSG00000020672.15	Sntg2	chr12	protein_coding	syntrophin, gamma 2
novel_NIR_4259	chr12	30420010	30423157	-	30389856	30423157	A3SS	ENSMUST00000218489.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	ENSMUSG00000020672.15	Sntg2	chr12	protein_coding	syntrophin, gamma 2
novel_NIR_4260	chr12	30420010	30423157	-	30389868	30423157	A3SS	ENSMUST00000218723.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000020672.15	Sntg2	chr12	protein_coding	syntrophin, gamma 2
novel_NIR_4261	chr12	30970234	30972234	+	30963100	30972234	A5SS	ENSMUST00000128814.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020669.16	Sh3yl1	chr12	protein_coding	Sh3 domain YSC-like 1
novel_NIR_4262	chr12	31544748	31548167	-	31544748	31549522	A5SS	ENSMUST00000064240.14	novel	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	1	0	1	n	0.25	2	6	2	6	y	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	ENSMUSG00000020659.17	Cbll1	chr12	protein_coding	Casitas B-lineage lymphoma-like 1
novel_NIR_4263	chr12	31691727	31696620	-	31691727;31692885	31692763;31696620	ES	ENSMUST00000020977.4	novel	0.00	0	7.5	0	5;10	n	0.00	0	5.0	0	7;3	n	0.00	0	1.5	0	2;1	n	0.00	0	9.0	0	7;11	n	0.00	0	10.5	0	14;7	n	0.00	0	3.0	0	2;4	n	0.00	0	8.5	0	7;10	n	0.00	0	4.0	0	4;4	n	0.00	0	4.0	0	6;2	n	0.17	2	9.5	2	6;13	y	0.00	0	7.5	0	10;5	n	0.12	1	7.0	1	7;7	n	ENSMUSG00000020648.4	Dus4l	chr12	protein_coding	dihydrouridine synthase 4-like (S. cerevisiae)
novel_NIR_4264	chr12	31705343	31710716	+	31704982	31710716	A5SS	ENSMUST00000036862.5	novel	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.25	3	9	3	9	y	0.00	0	11	0	11	n	0.33	1	2	1	2	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.09	1	10	1	10	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000035933.6	Cog5	chr12	protein_coding	component of oligomeric golgi complex 5
novel_NIR_4265	chr12	31705432	31710716	+	31704982	31710716	A5SS	ENSMUST00000036862.5	novel	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.10	1	9	1	9	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	1.00	2	0	2	0	y	0.56	5	4	5	4	y	ENSMUSG00000035933.6	Cog5	chr12	protein_coding	component of oligomeric golgi complex 5
novel_NIR_4266	chr12	31970632	31987176	+	31970632;31975790	31975644;31987176	ES	ENSMUST00000036862.5	novel	0.00	0	10.0	0	15;5	n	0.15	2	11.5	2	15;8	y	0.00	0	8.0	0	16;0	n	0.00	0	15.0	0	25;5	n	0.00	0	16.0	0	28;4	n	0.00	0	3.5	0	6;1	n	0.00	0	14.0	0	24;4	n	0.00	0	6.5	0	12;1	n	0.00	0	12.5	0	20;5	n	0.00	0	11.5	0	19;4	n	0.00	0	14.5	0	25;4	n	0.00	0	7.5	0	14;1	n	ENSMUSG00000035933.6	Cog5	chr12	protein_coding	component of oligomeric golgi complex 5
novel_NIR_4267	chr12	31975790	31978611	+	31975790	31987176	A3SS	ENSMUST00000036862.5	novel	0.00	0	5	0	5	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.43	3	4	3	4	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	ENSMUSG00000035933.6	Cog5	chr12	protein_coding	component of oligomeric golgi complex 5
novel_NIR_4268	chr12	31975790	31987651	+	31975790	31987176	3pMXE	ENSMUST00000036862.5	novel	0.00	0	5	0	5	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.67	2	1	2	1	y	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	ENSMUSG00000035933.6	Cog5	chr12	protein_coding	component of oligomeric golgi complex 5
novel_NIR_4269	chr12	31975790	31992210	+	31975790	31987176	3pMXE	ENSMUST00000036862.5	novel	0.29	2	5	2	5	y	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	ENSMUSG00000035933.6	Cog5	chr12	protein_coding	component of oligomeric golgi complex 5
novel_NIR_4270	chr12	31978724	31983356	-	31983030	31983356	3pMXE	ENSMUST00000175686.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000002996.18	Hbp1	chr12	protein_coding	high mobility group box transcription factor 1
novel_NIR_4271	chr12	3285862	3287285	+	3286701	3287285	5pMXE	ENSMUST00000049684.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000079179.10	Rab10os	chr12	lncRNA	RAB10, member RAS oncogene family, opposite strand
novel_NIR_4272	chr12	3285929	3287347	+	3285929	3287285	A3SS	ENSMUST00000178074.8	novel	0.40	6	9	6	9	y	0.15	3	17	3	17	y	0.00	0	21	0	21	n	0.25	5	15	5	15	y	0.04	1	25	1	25	n	0.12	1	7	1	7	n	0.21	4	15	4	15	y	0.00	0	6	0	6	n	0.12	1	7	1	7	n	0.15	6	35	6	35	y	0.05	1	19	1	19	n	0.12	2	14	2	14	n	ENSMUSG00000079179.10	Rab10os	chr12	lncRNA	RAB10, member RAS oncogene family, opposite strand
novel_NIR_4273	chr12	3297438	3299743	+	3297438	3299739	A3SS	ENSMUST00000179924.8	novel	0.26	5	14	5	14	y	0.00	0	4	0	4	n	0.00	0	23	0	23	n	0.00	0	11	0	11	n	0.07	1	14	1	14	n	0.00	0	13	0	13	n	0.06	1	16	1	16	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	21	0	21	n	ENSMUSG00000079179.10	Rab10os	chr12	lncRNA	RAB10, member RAS oncogene family, opposite strand
novel_NIR_4274	chr12	3297438	3299743	+	3297438	3299867	A3SS	ENSMUST00000177896.8	novel	0.50	5	5	5	5	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.14	1	6	1	6	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	-	-	-	-	-	-	ENSMUSG00000079179.10	Rab10os	chr12	lncRNA	RAB10, member RAS oncogene family, opposite strand
novel_NIR_4275	chr12	32975534	32981957	-	32975534	33003197	A5SS	ENSMUST00000181670.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000097494.8	4933406C10Rik	chr12	lncRNA	RIKEN cDNA 4933406C10 gene
novel_NIR_4276	chr12	33267815	33298927	+	33267815	33299850	A3SS	ENSMUST00000077456.13	novel	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.33	1	2	1	2	n	0.00	0	16	0	16	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.12	1	7	1	7	n	0.23	3	10	3	10	y	0.00	0	12	0	12	n	ENSMUSG00000020564.18	Atxn7l1	chr12	protein_coding	ataxin 7-like 1
novel_NIR_4277	chr12	33267815	33298927	+	33267815	33361591	A3SS	ENSMUST00000130740.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000020564.18	Atxn7l1	chr12	protein_coding	ataxin 7-like 1
novel_NIR_4278	chr12	33267815	33298927	+	33267815	33375910	A3SS	ENSMUST00000146040.9	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.75	3	1	3	1	y	-	-	-	-	-	-	ENSMUSG00000020564.18	Atxn7l1	chr12	protein_coding	ataxin 7-like 1
novel_NIR_4279	chr12	33376132	33382897	+	33376132	33391920	A3SS	ENSMUST00000146040.9	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.15	3	17	3	17	y	-	-	-	-	-	-	0.00	0	7	0	7	n	0.25	1	3	1	3	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.20	1	4	1	4	n	0.12	1	7	1	7	n	ENSMUSG00000020564.18	Atxn7l1	chr12	protein_coding	ataxin 7-like 1
novel_NIR_4280	chr12	33376132	33386997	+	33376132	33391920	A3SS	ENSMUST00000146040.9	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.29	2	5	2	5	y	0.17	1	5	1	5	n	0.19	4	17	4	17	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.12	1	7	1	7	n	0.20	2	8	2	8	n	0.33	2	4	2	4	y	0.00	0	7	0	7	n	ENSMUSG00000020564.18	Atxn7l1	chr12	protein_coding	ataxin 7-like 1
novel_NIR_4281	chr12	33387152	33391920	+	33376132	33391920	A5SS	ENSMUST00000146040.9	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.29	2	5	2	5	n	0.06	1	17	1	17	n	1.00	1	0	1	0	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.11	1	8	1	8	n	0.00	0	4	0	4	n	0.22	2	7	2	7	y	ENSMUSG00000020564.18	Atxn7l1	chr12	protein_coding	ataxin 7-like 1
novel_NIR_4282	chr12	33481298	33483504	+	33479907	33483504	A5SS	ENSMUST00000020877.9	novel	0.00	0	18	0	18	n	0.25	2	6	2	6	y	0.09	2	20	2	20	n	0.00	0	27	0	27	n	0.11	2	17	2	17	n	0.00	0	26	0	26	n	0.05	1	20	1	20	n	0.00	0	11	0	11	n	0.12	1	7	1	7	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.07	1	13	1	13	n	ENSMUSG00000020561.9	Polr1f	chr12	protein_coding	RNA polymerase I subunit F
novel_NIR_4283	chr12	33481298	33483504	+	33480193	33483504	A5SS	ENSMUST00000218748.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000020561.9	Polr1f	chr12	protein_coding	RNA polymerase I subunit F
novel_NIR_4284	chr12	3456711	3457236	-	3456711	3457644	A5SS	ENSMUST00000095903.7	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.25	3	9	3	9	y	0.00	0	1	0	1	n	0.00	0	6	0	6	n	ENSMUSG00000071456.7	1110002L01Rik	chr12	lncRNA	RIKEN cDNA 1110002L01 gene
novel_NIR_4285	chr12	3456711	3457236	-	3456711	3457701	A5SS	ENSMUST00000168012.3	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.38	3	5	3	5	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000071456.7	1110002L01Rik	chr12	lncRNA	RIKEN cDNA 1110002L01 gene
novel_NIR_4286	chr12	34578344	34764277	-	34578344	34578599	5pMXE	ENSMUST00000110819.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000004698.12	Hdac9	chr12	protein_coding	histone deacetylase 9
novel_NIR_4287	chr12	34578344	34764277	-	34578344	34668123	5pMXE	ENSMUST00000209463.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000004698.12	Hdac9	chr12	protein_coding	histone deacetylase 9
novel_NIR_4288	chr12	34578344	34764277	-	34578344	34877636	A5SS	ENSMUST00000211752.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000004698.12	Hdac9	chr12	protein_coding	histone deacetylase 9
novel_NIR_4289	chr12	35136037	35136862	+	35136027	35136862	A5SS	ENSMUST00000221272.2	novel	0.00	0	15	0	15	n	0.20	2	8	2	8	y	0.05	2	41	2	41	n	0.00	0	17	0	17	n	0.10	4	38	4	38	n	0.05	1	18	1	18	n	0.00	0	32	0	32	n	0.00	0	35	0	35	n	0.00	0	28	0	28	n	0.06	1	17	1	17	n	0.00	0	8	0	8	n	0.00	0	26	0	26	n	ENSMUSG00000020590.17	Snx13	chr12	protein_coding	sorting nexin 13
novel_NIR_4290	chr12	35732695	35744327	+	35732672	35744327	A5SS	ENSMUST00000223547.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	13	0	13	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.50	2	2	2	2	y	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000113548.2	Gm34047	chr12	lncRNA	predicted gene, 34047
novel_NIR_4291	chr12	3639238	3639334	+	3639238	3646649	A3SS	ENSMUST00000173998.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000071454.14	Dtnb	chr12	protein_coding	dystrobrevin, beta
novel_NIR_4292	chr12	36572050	36577250	+	36572050	36597828	A3SS	ENSMUST00000221452.2	novel	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.30	3	7	3	7	y	0.00	0	7	0	7	n	0.00	0	6	0	6	n	ENSMUSG00000043153.7	Crppa	chr12	protein_coding	CDP-L-ribitol pyrophosphorylase A
novel_NIR_4293	chr12	3736862	3782618	+	3769658	3782618	5pMXE	ENSMUST00000173498.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000071454.14	Dtnb	chr12	protein_coding	dystrobrevin, beta
novel_NIR_4294	chr12	37464988	37465938	+	37464988	37469945	A3SS	ENSMUST00000159998.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000050103.19	Agmo	chr12	protein_coding	alkylglycerol monooxygenase
novel_NIR_4295	chr12	37464988	37465938	+	37464988	37614462	A3SS	ENSMUST00000160390.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000050103.19	Agmo	chr12	protein_coding	alkylglycerol monooxygenase
novel_NIR_4296	chr12	37464988	37525303	+	37464988	37614462	A3SS	ENSMUST00000160390.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000050103.19	Agmo	chr12	protein_coding	alkylglycerol monooxygenase
novel_NIR_4297	chr12	37516531	37631443	+	37495295	37631443	A5SS	ENSMUST00000221949.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000050103.19	Agmo	chr12	protein_coding	alkylglycerol monooxygenase
novel_NIR_4298	chr12	3753305	3768412	+	3698389	3768412	A5SS	ENSMUST00000168806.8	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000071454.14	Dtnb	chr12	protein_coding	dystrobrevin, beta
novel_NIR_4299	chr12	37621755	37631443	+	37495295	37631443	A5SS	ENSMUST00000221949.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	ENSMUSG00000050103.19	Agmo	chr12	protein_coding	alkylglycerol monooxygenase
novel_NIR_4300	chr12	3768489	3777322	+	3768489	3784939	A3SS	ENSMUST00000173483.8	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.29	2	5	2	5	y	ENSMUSG00000071454.14	Dtnb	chr12	protein_coding	dystrobrevin, beta
novel_NIR_4301	chr12	40055710	40056700	-	40055710	40056699	A5SS	ENSMUST00000144910.2	novel	1.00	2	0	2	0	y	0.50	1	1	1	1	n	0.22	2	7	2	7	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.42	5	7	5	7	y	0.00	0	5	0	5	n	0.57	4	3	4	3	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000047446.19	Arl4a	chr12	protein_coding	ADP-ribosylation factor-like 4A
novel_NIR_4302	chr12	40058047	40058120	-	40058037	40058120	A3SS	ENSMUST00000144910.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000047446.19	Arl4a	chr12	protein_coding	ADP-ribosylation factor-like 4A
novel_NIR_4303	chr12	40061459	40072047	-	40061459	40064236	5pMXE	ENSMUST00000138572.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000047446.19	Arl4a	chr12	protein_coding	ADP-ribosylation factor-like 4A
novel_NIR_4304	chr12	40061459	40072047	-	40061459	40086566	A5SS	ENSMUST00000144910.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.71	5	2	5	2	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.67	4	2	4	2	y	0.43	3	4	3	4	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.20	1	4	1	4	n	ENSMUSG00000047446.19	Arl4a	chr12	protein_coding	ADP-ribosylation factor-like 4A
novel_NIR_4305	chr12	40076266	40086566	-	40061459	40086566	A3SS	ENSMUST00000144910.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000047446.19	Arl4a	chr12	protein_coding	ADP-ribosylation factor-like 4A
novel_NIR_4306	chr12	40428873	40476671	-	40428873	40460575	A5SS&ES	ENSMUST00000069692.10	novel	0.00	0	6	0	6	n	0.38	3	5	3	5	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000055917.16	Zfp277	chr12	protein_coding	zinc finger protein 277
novel_NIR_4307	chr12	40428873	40476671	-	40428873	40495665	A5SS	ENSMUST00000069637.15	novel	0.00	0	12	0	12	n	0.25	3	9	3	9	y	0.00	0	19	0	19	n	0.00	0	9	0	9	n	0.00	0	20	0	20	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	18	0	18	n	0.00	0	15	0	15	n	0.00	0	21	0	21	n	0.00	0	17	0	17	n	ENSMUSG00000055917.16	Zfp277	chr12	protein_coding	zinc finger protein 277
novel_NIR_4308	chr12	40428873	40496371	-	40428873	40495665	5pMXE	ENSMUST00000069637.15	novel	0.00	0	12	0	12	n	0.18	2	9	2	9	y	0.05	1	19	1	19	n	0.10	1	9	1	9	n	0.09	2	20	2	20	n	0.00	0	12	0	12	n	0.12	2	14	2	14	n	0.00	0	8	0	8	n	0.05	1	18	1	18	n	0.25	5	15	5	15	y	0.00	0	21	0	21	n	0.00	0	17	0	17	n	ENSMUSG00000055917.16	Zfp277	chr12	protein_coding	zinc finger protein 277
novel_NIR_4309	chr12	40477496	40495665	-	40428873	40495665	A3SS	ENSMUST00000069637.15	novel	0.20	3	12	3	12	y	0.00	0	9	0	9	n	0.00	0	19	0	19	n	0.00	0	9	0	9	n	0.00	0	20	0	20	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	18	0	18	n	0.00	0	15	0	15	n	0.00	0	21	0	21	n	0.00	0	17	0	17	n	ENSMUSG00000055917.16	Zfp277	chr12	protein_coding	zinc finger protein 277
novel_NIR_4310	chr12	40477496	40495665	-	40460952	40495665	A3SS	ENSMUST00000069692.10	novel	0.43	3	4	3	4	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000055917.16	Zfp277	chr12	protein_coding	zinc finger protein 277
novel_NIR_4311	chr12	40840160	40844767	+	40840160;40844622	40844596;40844767	ES	ENSMUST00000037488.8	novel	1.00	23	0.0	23	0;0	y	1.00	16	0.0	16	0;0	y	1.00	25	0.0	25	0;0	y	1.00	20	0.0	20	0;0	y	1.00	34	0.0	34	0;0	y	1.00	10	0.0	10	0;0	y	1.00	24	0.0	24	0;0	y	1.00	16	0.0	16	0;0	y	1.00	15	0.0	15	0;0	y	1.00	28	0.0	28	0;0	y	1.00	14	0.0	14	0;0	y	1.00	16	0.0	16	0;0	y	ENSMUSG00000035954.11	Dock4	chr12	protein_coding	dedicator of cytokinesis 4
novel_NIR_4312	chr12	40883180	40884375	+	40883234	40884375	A5SS	ENSMUST00000037488.8	novel	0.38	10	16	10	16	y	0.08	1	12	1	12	n	0.15	5	28	5	28	y	0.03	1	32	1	32	n	0.19	6	26	6	26	y	0.17	1	5	1	5	n	0.24	8	25	8	25	y	0.09	2	21	2	21	n	0.19	4	17	4	17	y	0.16	6	31	6	31	y	0.00	0	15	0	15	n	0.19	6	25	6	25	y	ENSMUSG00000035954.11	Dock4	chr12	protein_coding	dedicator of cytokinesis 4
novel_NIR_4313	chr12	40891303	40894209	+	40891297	40894209	A5SS	ENSMUST00000037488.8	novel	0.21	5	19	5	19	y	0.06	1	15	1	15	n	0.00	0	21	0	21	n	0.12	4	29	4	29	n	0.00	0	37	0	37	n	0.00	0	15	0	15	n	0.14	5	30	5	30	n	0.13	3	20	3	20	n	0.00	0	19	0	19	n	0.00	0	31	0	31	n	0.07	2	28	2	28	n	0.00	0	38	0	38	n	ENSMUSG00000035954.11	Dock4	chr12	protein_coding	dedicator of cytokinesis 4
novel_NIR_4314	chr12	4284697	4286363	+	4284278	4286363	A5SS	ENSMUST00000179139.3	novel	0.59	33	23	33	23	y	0.58	29	21	29	21	y	0.64	29	16	29	16	y	0.51	23	22	23	22	y	0.69	46	21	46	21	y	0.51	19	18	19	18	y	0.59	48	34	48	34	y	0.62	18	11	18	11	y	0.41	18	26	18	26	y	0.67	62	30	62	30	y	0.60	50	33	50	33	y	0.46	33	38	33	38	y	ENSMUSG00000096199.3	Ptrhd1	chr12	protein_coding	peptidyl-tRNA hydrolase domain containing 1
novel_NIR_4315	chr12	4299747	4303657	-	4299747;4299890	4299836;4303657	ES	ENSMUST00000219373.2	novel	0.29	3	7.5	3	2;13	y	0.00	0	6.5	0	5;8	n	0.06	1	17.0	1	4;30	n	0.00	0	8.0	0	4;12	n	0.00	0	9.0	0	6;12	n	0.00	0	12.0	0	5;19	n	0.00	0	7.5	0	4;11	n	0.15	2	11.0	2	8;14	y	0.00	0	11.0	0	5;17	n	0.00	0	12.5	0	6;19	n	0.00	0	10.0	0	3;17	n	0.00	0	11.0	0	4;18	n	ENSMUSG00000020647.11	Ncoa1	chr12	protein_coding	nuclear receptor coactivator 1
novel_NIR_4316	chr12	4299747	4303657	-	4299750	4303657	A3SS	ENSMUST00000220434.2	novel	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000020647.11	Ncoa1	chr12	protein_coding	nuclear receptor coactivator 1
novel_NIR_4317	chr12	4299747	4303657	-	4299890	4303657	A3SS&ES	ENSMUST00000085814.5	novel	0.19	3	13	3	13	y	0.00	0	8	0	8	n	0.03	1	30	1	30	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	19	0	19	n	0.00	0	11	0	11	n	0.12	2	14	2	14	n	0.00	0	17	0	17	n	0.00	0	19	0	19	n	0.00	0	17	0	17	n	0.00	0	18	0	18	n	ENSMUSG00000020647.11	Ncoa1	chr12	protein_coding	nuclear receptor coactivator 1
novel_NIR_4318	chr12	4385892	4389018	-	4385878	4389018	A3SS	ENSMUST00000085814.5	novel	0.00	0	5	0	5	n	0.40	2	3	2	3	y	0.00	0	18	0	18	n	0.00	0	12	0	12	n	0.00	0	19	0	19	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	ENSMUSG00000020647.11	Ncoa1	chr12	protein_coding	nuclear receptor coactivator 1
novel_NIR_4319	chr12	44255088	44256723	-	44255907	44256723	A3SS&ES	ENSMUST00000220421.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000014905.5	Dnajb9	chr12	protein_coding	DnaJ heat shock protein family (Hsp40) member B9
novel_NIR_4320	chr12	44316084	44329558	+	44316084	44330094	A3SS	ENSMUST00000218954.2	novel	0.00	0	6	0	6	n	0.22	4	14	4	14	y	0.33	11	22	11	22	y	0.20	3	12	3	12	y	0.23	3	10	3	10	n	0.00	0	6	0	6	n	0.08	2	22	2	22	n	0.20	2	8	2	8	y	0.35	6	11	6	11	y	0.25	5	15	5	15	y	0.30	3	7	3	7	y	0.35	9	17	9	17	y	ENSMUSG00000036257.16	Pnpla8	chr12	protein_coding	patatin-like phospholipase domain containing 8
novel_NIR_4321	chr12	44316084	44330321	+	44316084	44329361	A3SS	ENSMUST00000043082.16	novel	0.04	2	46	2	46	n	0.17	9	44	9	44	y	0.06	10	144	10	144	n	0.07	9	126	9	126	n	0.07	9	129	9	129	n	0.07	5	68	5	68	n	0.06	10	149	10	149	n	0.03	3	86	3	86	n	0.01	1	89	1	89	n	0.04	5	125	5	125	n	0.10	9	79	9	79	n	0.05	7	121	7	121	n	ENSMUSG00000036257.16	Pnpla8	chr12	protein_coding	patatin-like phospholipase domain containing 8
novel_NIR_4322	chr12	44316084	44330321	+	44316084	44330094	3pMXE	ENSMUST00000218954.2	novel	0.25	2	6	2	6	y	0.39	9	14	9	14	y	0.31	10	22	10	22	y	0.43	9	12	9	12	y	0.47	9	10	9	10	y	0.45	5	6	5	6	y	0.31	10	22	10	22	y	0.27	3	8	3	8	y	0.08	1	11	1	11	n	0.25	5	15	5	15	y	0.56	9	7	9	7	y	0.29	7	17	7	17	y	ENSMUSG00000036257.16	Pnpla8	chr12	protein_coding	patatin-like phospholipase domain containing 8
novel_NIR_4323	chr12	44316084	44342681	+	44316084	44330094	3pMXE	ENSMUST00000218954.2	novel	0.14	1	6	1	6	n	0.00	0	14	0	14	n	0.04	1	22	1	22	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.04	1	22	1	22	n	0.20	2	8	2	8	y	0.00	0	11	0	11	n	0.12	2	15	2	15	n	0.00	0	7	0	7	n	0.00	0	17	0	17	n	ENSMUSG00000036257.16	Pnpla8	chr12	protein_coding	patatin-like phospholipase domain containing 8
novel_NIR_4324	chr12	44316084;44329996	44329558;44330094	+	44316084	44330094	cassetteExon	ENSMUST00000218954.2	novel	0.00	0.0	6	0;0	6	n	0.12	2.0	14	4;0	14	n	0.20	5.5	22	11;0	22	n	0.11	1.5	12	3;0	12	n	0.23	3.0	10	3;3	10	y	0.00	0.0	6	0;0	6	n	0.04	1.0	22	2;0	22	n	0.11	1.0	8	2;0	8	n	0.21	3.0	11	6;0	11	n	0.14	2.5	15	5;0	15	n	0.18	1.5	7	3;0	7	n	0.21	4.5	17	9;0	17	n	ENSMUSG00000036257.16	Pnpla8	chr12	protein_coding	patatin-like phospholipase domain containing 8
novel_NIR_4325	chr12	44321340	44329361	+	44322134	44329361	5pMXE	ENSMUST00000125757.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000036257.16	Pnpla8	chr12	protein_coding	patatin-like phospholipase domain containing 8
novel_NIR_4326	chr12	44329996	44330094	+	44301556	44330094	A5SS	ENSMUST00000122902.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036257.16	Pnpla8	chr12	protein_coding	patatin-like phospholipase domain containing 8
novel_NIR_4327	chr12	44346074	44351698	+	44346074	44354702	A3SS	ENSMUST00000143771.2	novel	1.00	11	0	11	0	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	-	-	-	-	-	-	ENSMUSG00000036257.16	Pnpla8	chr12	protein_coding	patatin-like phospholipase domain containing 8
novel_NIR_4328	chr12	44949773	45120978	-	44949773	45059632	5pMXE	ENSMUST00000130202.2	novel	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	ENSMUSG00000046314.17	Stxbp6	chr12	protein_coding	syntaxin binding protein 6 (amisyn)
novel_NIR_4329	chr12	44949773	45120978	-	44949773;45066438	45066250;45120978	ES	ENSMUST00000053768.14	novel	0.15	5	29.0	5	35;23	y	0.00	0	18.5	0	22;15	n	0.10	2	19.0	2	18;20	n	0.00	0	38.0	0	36;40	n	0.07	3	40.0	3	46;34	n	0.12	2	14.5	2	11;18	n	0.00	0	21.0	0	28;14	n	0.00	0	17.0	0	18;16	n	0.07	1	13.5	1	21;6	n	0.12	5	35.0	5	41;29	n	0.09	2	19.5	2	21;18	n	0.06	2	31.0	2	36;26	n	ENSMUSG00000046314.17	Stxbp6	chr12	protein_coding	syntaxin binding protein 6 (amisyn)
novel_NIR_4330	chr12	44949773	45120978	-	45066438	45120978	3pMXE	ENSMUST00000218249.2	novel	0.18	5	23	5	23	y	0.00	0	15	0	15	n	0.09	2	20	2	20	n	0.00	0	40	0	40	n	0.08	3	34	3	34	n	0.10	2	18	2	18	n	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.14	1	6	1	6	n	0.15	5	29	5	29	y	0.10	2	18	2	18	n	0.07	2	26	2	26	n	ENSMUSG00000046314.17	Stxbp6	chr12	protein_coding	syntaxin binding protein 6 (amisyn)
novel_NIR_4331	chr12	4663305	4676530	+	4663305;4674983	4674891;4676530	ES	ENSMUST00000218402.2	novel	0.00	0	7.5	0	8;7	n	0.40	2	3.0	2	4;2	y	0.00	0	21.5	0	26;17	n	0.00	0	16.0	0	14;18	n	0.00	0	19.0	0	18;20	n	0.00	0	10.5	0	10;11	n	0.00	0	13.5	0	14;13	n	0.00	0	11.5	0	10;13	n	0.00	0	5.0	0	4;6	n	0.00	0	11.5	0	15;8	n	0.00	0	7.5	0	8;7	n	0.00	0	10.0	0	11;9	n	ENSMUSG00000020640.11	Itsn2	chr12	protein_coding	intersectin 2
novel_NIR_4332	chr12	46799449	46863669	-	46767639	46863669	A3SS	ENSMUST00000021438.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021047.8	Nova1	chr12	protein_coding	NOVA alternative splicing regulator 1
novel_NIR_4333	chr12	4679960	4680637	+	4679964	4680637	A5SS	ENSMUST00000217981.2	novel	0.00	0	21	0	21	n	0.20	2	8	2	8	y	0.00	0	42	0	42	n	0.00	0	24	0	24	n	0.00	0	30	0	30	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.00	0	18	0	18	n	0.00	0	18	0	18	n	0.00	0	17	0	17	n	0.00	0	5	0	5	n	0.05	1	21	1	21	n	ENSMUSG00000020640.11	Itsn2	chr12	protein_coding	intersectin 2
novel_NIR_4334	chr12	4727116	4747142	+	4746516	4747142	5pMXE	ENSMUST00000219182.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000020640.11	Itsn2	chr12	protein_coding	intersectin 2
novel_NIR_4335	chr12	4759027	4760355	+	4759027	4761953	A3SS	ENSMUST00000062580.8	novel	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	17	0	17	n	0.11	2	17	2	17	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.29	2	5	2	5	y	0.17	1	5	1	5	n	ENSMUSG00000020640.11	Itsn2	chr12	protein_coding	intersectin 2
novel_NIR_4336	chr12	4791207	4791318	-	4791207	4794470	A5SS	ENSMUST00000217684.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.57	4	3	4	3	y	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000050545.11	Fam228b	chr12	protein_coding	family with sequence similarity 228, member B
novel_NIR_4337	chr12	4791207	4791318	-	4791207	4795652	A5SS	ENSMUST00000223500.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.80	4	1	4	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000050545.11	Fam228b	chr12	protein_coding	family with sequence similarity 228, member B
novel_NIR_4338	chr12	4795756	4798264	-	4795756;4798177	4798021;4798264	ES	ENSMUST00000218856.2	novel	0.00	0	1.5	0	0;3	n	0.00	0	1.0	0	0;2	n	-	-	-	-	-	-	0.00	0	1.0	0	0;2	n	0.80	2	0.5	2	0;1	y	0.00	0	0.5	0	0;1	n	0.00	0	1.0	0	1;1	n	0.00	0	0.5	0	0;1	n	0.00	0	1.5	0	0;3	n	0.00	0	3.5	0	2;5	n	0.00	0	0.5	0	0;1	n	0.00	0	1.5	0	2;1	n	ENSMUSG00000050545.11	Fam228b	chr12	protein_coding	family with sequence similarity 228, member B
novel_NIR_4339	chr12	4795756	4798264	-	4798177	4798264	3pMXE	ENSMUST00000053458.7	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000050545.11	Fam228b	chr12	protein_coding	family with sequence similarity 228, member B
novel_NIR_4340	chr12	4795756	4798264	-	4798196	4798264	3pMXE	ENSMUST00000218199.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000050545.11	Fam228b	chr12	protein_coding	family with sequence similarity 228, member B
novel_NIR_4341	chr12	4867819	4868901	+	4867819	4868836	A3SS	ENSMUST00000218705.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037361.9	Sf3b6	chr12	protein_coding	splicing factor 3B, subunit 6
novel_NIR_4342	chr12	4870606	4884739	-	4883795	4884739	3pMXE	ENSMUST00000020964.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.60	3	2	3	2	y	ENSMUSG00000020635.9	Fkbp1b	chr12	protein_coding	FK506 binding protein 1b
novel_NIR_4343	chr12	4870606	4884739	-	4883840	4884739	3pMXE	ENSMUST00000219880.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000020635.9	Fkbp1b	chr12	protein_coding	FK506 binding protein 1b
novel_NIR_4344	chr12	4901942	4907807	+	4901942;4905392	4905278;4907807	ES	ENSMUST00000223551.2	novel	0.00	0	7.5	0	10;5	n	0.00	0	4.5	0	5;4	n	0.00	0	11.0	0	13;9	n	0.00	0	8.0	0	8;8	n	0.00	0	16.0	0	14;18	n	0.00	0	5.0	0	6;4	n	0.00	0	14.0	0	19;9	n	0.00	0	6.5	0	4;9	n	0.00	0	13.0	0	18;8	n	0.15	3	16.5	3	27;6	y	0.00	0	7.5	0	10;5	n	0.00	0	10.0	0	13;7	n	ENSMUSG00000051721.7	Wdcp	chr12	protein_coding	WD repeat and coiled coil containing
novel_NIR_4345	chr12	4905392	4906316	+	4905392	4906846	A3SS	ENSMUST00000220215.2	novel	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.40	2	3	2	3	y	0.50	2	2	2	2	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.08	1	11	1	11	n	0.00	0	8	0	8	n	ENSMUSG00000051721.7	Wdcp	chr12	protein_coding	WD repeat and coiled coil containing
novel_NIR_4346	chr12	4905392	4906316	+	4905392	4907807	A3SS	ENSMUST00000223551.2	novel	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.00	0	9	0	9	n	0.11	1	8	1	8	n	0.00	0	18	0	18	n	0.00	0	4	0	4	n	0.18	2	9	2	9	y	0.18	2	9	2	9	y	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.17	1	5	1	5	n	0.00	0	7	0	7	n	ENSMUSG00000051721.7	Wdcp	chr12	protein_coding	WD repeat and coiled coil containing
novel_NIR_4347	chr12	4941417	4944538	-	4935858	4944538	A3SS	ENSMUST00000141360.2	novel	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.21	3	11	3	11	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.50	3	3	3	3	y	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	ENSMUSG00000020634.13	Ubxn2a	chr12	protein_coding	UBX domain protein 2A
novel_NIR_4348	chr12	5016668	5019352	+	5016000	5019352	A5SS	ENSMUST00000045664.7	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.04	1	24	1	24	n	0.20	1	4	1	4	n	0.29	2	5	2	5	y	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.12	1	7	1	7	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	ENSMUSG00000052812.6	Atad2b	chr12	protein_coding	ATPase family, AAA domain containing 2B
novel_NIR_4349	chr12	5019442	5020406	+	5019442	5023968	A3SS	ENSMUST00000045664.7	novel	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.09	2	20	2	20	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.08	1	12	1	12	n	0.00	0	12	0	12	n	0.22	2	7	2	7	y	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.20	2	8	2	8	y	ENSMUSG00000052812.6	Atad2b	chr12	protein_coding	ATPase family, AAA domain containing 2B
novel_NIR_4350	chr12	5063984	5067983	+	5063999	5067983	A5SS	ENSMUST00000045664.7	novel	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.25	2	6	2	6	y	0.00	0	12	0	12	n	0.25	1	3	1	3	n	0.23	3	10	3	10	y	0.00	0	5	0	5	n	0.12	1	7	1	7	n	ENSMUSG00000052812.6	Atad2b	chr12	protein_coding	ATPase family, AAA domain containing 2B
novel_NIR_4351	chr12	51461706	51469690	+	51461706	51462406	3pMXE	ENSMUST00000219434.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000020952.11	Scfd1	chr12	protein_coding	Sec1 family domain containing 1
novel_NIR_4352	chr12	51489366	51491601	+	51489366	51491578	A3SS	ENSMUST00000218138.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000020952.11	Scfd1	chr12	protein_coding	Sec1 family domain containing 1
novel_NIR_4353	chr12	51676290	51689887	-	51676290;51680502	51680362;51689887	ES	ENSMUST00000013130.15	novel	0.50	1	1.0	1	2;0	n	0.44	2	2.5	2	4;1	y	0.00	0	4.5	0	8;1	n	0.50	2	2.0	2	4;0	y	0.00	0	7.0	0	11;3	n	0.80	2	0.5	2	1;0	y	0.33	1	2.0	1	4;0	n	0.29	1	2.5	1	5;0	n	-	-	-	-	-	-	0.40	2	3.0	2	6;0	y	1.00	2	0.0	2	0;0	y	0.00	0	3.0	0	6;0	n	ENSMUSG00000020954.17	Strn3	chr12	protein_coding	striatin, calmodulin binding protein 3
novel_NIR_4354	chr12	51676290	51694470	-	51676290	51680362	A5SS&ES	ENSMUST00000013130.15	novel	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.21	3	11	3	11	y	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.17	1	5	1	5	n	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	6	0	6	n	ENSMUSG00000020954.17	Strn3	chr12	protein_coding	striatin, calmodulin binding protein 3
novel_NIR_4355	chr12	51676290	51694789	-	51676290	51680362	A5SS&ES	ENSMUST00000013130.15	novel	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.38	5	8	5	8	y	0.00	0	4	0	4	n	0.15	2	11	2	11	y	0.00	0	1	0	1	n	0.43	3	4	3	4	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	6	0	6	n	ENSMUSG00000020954.17	Strn3	chr12	protein_coding	striatin, calmodulin binding protein 3
novel_NIR_4356	chr12	51680502	51694777	-	51680502;51689997	51689887;51694777	ES	ENSMUST00000013130.15	novel	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	0.53	4	3.5	4	1;6	y	0.00	0	2.0	0	0;4	n	0.36	2	3.5	2	3;4	y	1.00	3	0.0	3	0;0	y	0.57	2	1.5	2	0;3	y	-	-	-	-	-	-	-	-	-	-	-	-	0.67	4	2.0	4	0;4	y	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	ENSMUSG00000020954.17	Strn3	chr12	protein_coding	striatin, calmodulin binding protein 3
novel_NIR_4357	chr12	51692025	51694777	-	51689997	51694777	A3SS	ENSMUST00000013130.15	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020954.17	Strn3	chr12	protein_coding	striatin, calmodulin binding protein 3
novel_NIR_4358	chr12	51708496	51737773	-	51708496	51738205	A5SS	ENSMUST00000013130.15	novel	0.08	1	12	1	12	n	0.50	2	2	2	2	y	0.00	0	26	0	26	n	0.00	0	26	0	26	n	0.00	0	32	0	32	n	0.00	0	17	0	17	n	0.05	2	35	2	35	n	0.00	0	22	0	22	n	0.00	0	13	0	13	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.00	0	26	0	26	n	ENSMUSG00000020954.17	Strn3	chr12	protein_coding	striatin, calmodulin binding protein 3
novel_NIR_4359	chr12	51777748	51784699	+	51777748	51791538	A3SS	ENSMUST00000218820.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	ENSMUSG00000020955.10	Ap4s1	chr12	protein_coding	adaptor-related protein complex AP-4, sigma 1
novel_NIR_4360	chr12	51777748	51785645	+	51777748	51791538	A3SS	ENSMUST00000218820.2	novel	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	7	0	7	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	ENSMUSG00000020955.10	Ap4s1	chr12	protein_coding	adaptor-related protein complex AP-4, sigma 1
novel_NIR_4361	chr12	51809329	51810810	-	51809329	51810804	A5SS	ENSMUST00000042052.9	novel	0.05	4	79	4	79	n	0.07	4	53	4	53	n	0.07	14	185	14	185	n	0.15	20	113	20	113	y	0.14	30	181	30	181	n	0.14	15	95	15	95	n	0.11	20	162	20	162	n	0.11	20	161	20	161	n	0.04	4	102	4	102	n	0.14	25	155	25	155	n	0.12	12	91	12	91	n	0.09	14	144	14	144	n	ENSMUSG00000035247.17	Hectd1	chr12	protein_coding	HECT domain E3 ubiquitin protein ligase 1
novel_NIR_4362	chr12	51816007	51819057	-	51816148	51819057	A3SS	ENSMUST00000042052.9	novel	0.40	14	21	14	21	y	0.50	6	6	6	6	y	0.22	16	56	16	56	y	0.22	12	43	12	43	y	0.24	26	83	26	83	y	0.31	13	29	13	29	y	0.24	15	48	15	48	y	0.27	13	36	13	36	y	0.32	9	19	9	19	y	0.22	10	35	10	35	y	0.35	13	24	13	24	y	0.24	14	44	14	44	y	ENSMUSG00000035247.17	Hectd1	chr12	protein_coding	HECT domain E3 ubiquitin protein ligase 1
novel_NIR_4363	chr12	51829367	51830965	-	51829376	51830965	A3SS	ENSMUST00000179265.8	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035247.17	Hectd1	chr12	protein_coding	HECT domain E3 ubiquitin protein ligase 1
novel_NIR_4364	chr12	51999430	52002163	-	51999427	52002163	A3SS	ENSMUST00000040583.7	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.40	4	6	4	6	y	0.00	0	8	0	8	n	0.25	1	3	1	3	n	0.25	1	3	1	3	n	0.17	1	5	1	5	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	ENSMUSG00000035181.7	Heatr5a	chr12	protein_coding	HEAT repeat containing 5A
novel_NIR_4365	chr12	52550831	52562862	+	52550831	52562890	A3SS	ENSMUST00000219443.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035133.10	Arhgap5	chr12	protein_coding	Rho GTPase activating protein 5
novel_NIR_4366	chr12	52550831	52562862	+	52550831	52589272	A3SS	ENSMUST00000218755.2	novel	0.00	0	1	0	1	n	0.33	1	2	1	2	n	1.00	4	0	4	0	y	0.00	0	6	0	6	n	0.78	7	2	7	2	y	-	-	-	-	-	-	0.60	3	2	3	2	y	0.67	2	1	2	1	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000035133.10	Arhgap5	chr12	protein_coding	Rho GTPase activating protein 5
novel_NIR_4367	chr12	52551170	52562862	+	52551170	52589275	A3SS	ENSMUST00000217820.2	novel	1.00	4	0	4	0	y	0.83	5	1	5	1	y	0.88	23	3	23	3	y	1.00	16	0	16	0	y	0.89	24	3	24	3	y	0.79	11	3	11	3	y	0.65	11	6	11	6	y	0.83	10	2	10	2	y	0.43	3	4	3	4	y	0.67	10	5	10	5	y	0.70	7	3	7	3	y	0.68	15	7	15	7	y	ENSMUSG00000035133.10	Arhgap5	chr12	protein_coding	Rho GTPase activating protein 5
novel_NIR_4368	chr12	52551170	52562866	+	52551170	52589275	A3SS	ENSMUST00000217820.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.40	2	3	2	3	y	0.00	0	7	0	7	n	ENSMUSG00000035133.10	Arhgap5	chr12	protein_coding	Rho GTPase activating protein 5
novel_NIR_4369	chr12	52551170	52589272	+	52550831	52589272	A5SS	ENSMUST00000218755.2	novel	0.75	3	1	3	1	y	0.67	4	2	4	2	y	1.00	7	0	7	0	y	0.65	11	6	11	6	y	0.89	16	2	16	2	y	1.00	3	0	3	0	y	0.78	7	2	7	2	y	0.88	7	1	7	1	y	0.50	2	2	2	2	y	-	-	-	-	-	-	0.33	1	2	1	2	n	0.78	7	2	7	2	y	ENSMUSG00000035133.10	Arhgap5	chr12	protein_coding	Rho GTPase activating protein 5
novel_NIR_4370	chr12	52551170	52589272	+	52551170	52589275	A3SS	ENSMUST00000217820.2	novel	1.00	3	0	3	0	y	0.80	4	1	4	1	y	0.70	7	3	7	3	y	1.00	11	0	11	0	y	0.84	16	3	16	3	y	0.50	3	3	3	3	y	0.54	7	6	7	6	y	0.78	7	2	7	2	y	0.33	2	4	2	4	y	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.50	7	7	7	7	y	ENSMUSG00000035133.10	Arhgap5	chr12	protein_coding	Rho GTPase activating protein 5
novel_NIR_4371	chr12	52566750	52589275	+	52551170	52589275	A5SS	ENSMUST00000217820.2	novel	1.00	7	0	7	0	y	0.88	7	1	7	1	y	0.84	16	3	16	3	y	1.00	10	0	10	0	y	0.83	15	3	15	3	y	0.70	7	3	7	3	y	0.45	5	6	5	6	y	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.64	9	5	9	5	y	0.50	3	3	3	3	y	0.00	0	7	0	7	n	ENSMUSG00000035133.10	Arhgap5	chr12	protein_coding	Rho GTPase activating protein 5
novel_NIR_4372	chr12	54693219	54697352	-	54693320	54697352	A3SS	ENSMUST00000218147.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.50	5	5	5	5	y	0.00	0	5	0	5	n	0.00	0	11	0	11	n	ENSMUSG00000044408.8	Sptssa	chr12	protein_coding	serine palmitoyltransferase, small subunit A
novel_NIR_4373	chr12	54693320	54720356	-	54693320	54702924	5pMXE	ENSMUST00000220090.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	ENSMUSG00000044408.8	Sptssa	chr12	protein_coding	serine palmitoyltransferase, small subunit A
novel_NIR_4374	chr12	54697456	54703119	-	54697456	54703150	A5SS	ENSMUST00000218147.2	novel	0.50	2	2	2	2	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	ENSMUSG00000044408.8	Sptssa	chr12	protein_coding	serine palmitoyltransferase, small subunit A
novel_NIR_4375	chr12	54720575	54725295	-	54720575	54739659	A5SS	ENSMUST00000067272.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000054302.16	Eapp	chr12	protein_coding	E2F-associated phosphoprotein
novel_NIR_4376	chr12	54908618	54909272	-	54908618	54909196	5pMXE	ENSMUST00000221088.2	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.38	3	5	3	5	y	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000062929.9	Cfl2	chr12	protein_coding	cofilin 2, muscle
novel_NIR_4377	chr12	54970049	54974349	-	54970049;54970265	54970170;54974349	ES	ENSMUST00000038926.13	novel	0.00	0	5.0	0	2;8	n	0.00	0	5.0	0	5;5	n	0.09	2	21.5	2	18;25	n	0.33	3	6.0	3	8;4	y	0.09	1	10.0	1	10;10	n	0.00	0	7.5	0	6;9	n	0.15	1	5.5	1	4;7	n	0.00	0	9.0	0	6;12	n	0.15	1	5.5	1	5;6	n	0.00	0	8.5	0	9;8	n	0.00	0	4.5	0	4;5	n	0.00	0	7.5	0	9;6	n	ENSMUSG00000035021.14	Baz1a	chr12	protein_coding	bromodomain adjacent to zinc finger domain 1A
novel_NIR_4378	chr12	55027317	55032451	-	55022167	55032451	A3SS	ENSMUST00000038926.13	novel	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.04	1	23	1	23	n	0.11	1	8	1	8	n	0.00	0	12	0	12	n	0.13	2	13	2	13	n	0.36	4	7	4	7	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.20	1	4	1	4	n	0.08	1	11	1	11	n	ENSMUSG00000035021.14	Baz1a	chr12	protein_coding	bromodomain adjacent to zinc finger domain 1A
novel_NIR_4379	chr12	55157966	55185561	+	55157966	55159585	3pMXE	ENSMUST00000220578.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000073079.7	Srp54a	chr12	protein_coding	signal recognition particle 54A
novel_NIR_4380	chr12	55192117	55195888	-	55192154	55195888	A3SS	ENSMUST00000219562.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000112022.3	Gm2436	chr12	unprocessed_pseudogene	predicted gene 2436
novel_NIR_4381	chr12	55217764	55219101	+	55217764;55219020	55218954;55219101	ES	ENSMUST00000110708.4	novel	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	0.67	3	1.5	3	1;2	y	-	-	-	-	-	-	1.00	3	0.0	3	0;0	y	0.00	0	3.0	0	3;3	n	0.00	0	0.5	0	0;1	n	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1.0	0	2;0	n	-	-	-	-	-	-	ENSMUSG00000112449.2	Srp54b	chr12	protein_coding	signal recognition particle 54B
novel_NIR_4382	chr12	55224399	55227462	+	55224399;55227109	55227036;55227462	ES	ENSMUST00000110708.4	novel	-	-	-	-	-	-	0.00	0	1.0	0	2;0	n	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	0.00	0	1.0	0	1;1	n	0.00	0	1.5	0	3;0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000112449.2	Srp54b	chr12	protein_coding	signal recognition particle 54B
novel_NIR_4383	chr12	55292828	55294165	+	55292828;55294084	55294018;55294165	ES	ENSMUST00000218879.2	novel	0.00	0	5.5	0	0;11	n	0.00	0	5.5	0	0;11	n	0.00	0	12.5	0	0;25	n	0.00	0	7.5	0	0;15	n	0.12	1	7.0	1	0;14	n	0.27	2	5.5	2	0;11	y	0.24	2	6.5	2	0;13	y	0.00	0	5.0	0	0;10	n	0.47	4	4.5	4	0;9	y	0.15	1	5.5	1	0;11	n	0.00	0	4.0	0	0;8	n	0.17	1	5.0	1	0;10	n	ENSMUSG00000079108.7	Srp54c	chr12	protein_coding	signal recognition particle 54C
novel_NIR_4384	chr12	55323725	55325298	+	55323728	55325298	A5SS	ENSMUST00000217756.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000112368.2	Gm49376	chr12	unprocessed_pseudogene	predicted gene, 49376
novel_NIR_4385	chr12	55350122	55350401	+	55350117	55350401	A5SS	ENSMUST00000184766.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000021023.15	Prorp	chr12	protein_coding	protein only RNase P catalytic subunit
novel_NIR_4386	chr12	55350122	55350401	+	55350122	55353124	A3SS	ENSMUST00000183654.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000021023.15	Prorp	chr12	protein_coding	protein only RNase P catalytic subunit
novel_NIR_4387	chr12	55705988	55708091	-	55705988	55712338	A5SS	ENSMUST00000226244.2	novel	0.00	0	6	0	6	n	0.20	2	8	2	8	y	0.00	0	20	0	20	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.08	1	12	1	12	n	0.14	1	6	1	6	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.11	2	16	2	16	n	ENSMUSG00000021027.18	Ralgapa1	chr12	protein_coding	Ral GTPase activating protein, alpha subunit 1
novel_NIR_4388	chr12	55708180	55712338	-	55705988	55712338	A3SS	ENSMUST00000226244.2	novel	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	20	0	20	n	0.14	1	6	1	6	n	0.50	3	3	3	3	y	0.00	0	7	0	7	n	0.14	2	12	2	12	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.06	1	16	1	16	n	ENSMUSG00000021027.18	Ralgapa1	chr12	protein_coding	Ral GTPase activating protein, alpha subunit 1
novel_NIR_4389	chr12	55768272	55769559	-	55766493	55769559	A3SS	ENSMUST00000220367.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.10	1	9	1	9	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.22	2	7	2	7	y	ENSMUSG00000021027.18	Ralgapa1	chr12	protein_coding	Ral GTPase activating protein, alpha subunit 1
novel_NIR_4390	chr12	55883430	55884281	+	55883430	55885627	A3SS	ENSMUST00000217721.2	novel	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	ENSMUSG00000012076.9	Brms1l	chr12	protein_coding	breast cancer metastasis-suppressor 1-like
novel_NIR_4391	chr12	55883430	55884281	+	55883430	55886278	A3SS	ENSMUST00000218779.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000012076.9	Brms1l	chr12	protein_coding	breast cancer metastasis-suppressor 1-like
novel_NIR_4392	chr12	55883430	55884281	+	55883430	55888356	A3SS	ENSMUST00000059250.8	novel	0.14	1	6	1	6	n	0.00	0	4	0	4	n	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.07	1	13	1	13	n	0.00	0	5	0	5	n	0.08	1	12	1	12	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.15	2	11	2	11	y	ENSMUSG00000012076.9	Brms1l	chr12	protein_coding	breast cancer metastasis-suppressor 1-like
novel_NIR_4393	chr12	56375581	56377014	-	56375584	56377014	A3SS	ENSMUST00000021416.9	novel	0.18	3	14	3	14	y	0.40	6	9	6	9	y	0.00	0	8	0	8	n	0.33	5	10	5	10	y	0.40	8	12	8	12	y	0.17	1	5	1	5	n	0.42	8	11	8	11	y	0.12	1	7	1	7	n	0.29	2	5	2	5	y	0.20	3	12	3	12	y	0.30	6	14	6	14	y	0.06	1	15	1	15	n	ENSMUSG00000021028.9	Mbip	chr12	protein_coding	MAP3K12 binding inhibitory protein 1
novel_NIR_4394	chr12	57277397	57281367	+	57277397	57350131	A3SS	ENSMUST00000153755.8	novel	0.00	0	8	0	8	n	0.25	1	3	1	3	n	0.50	3	3	3	3	y	0.20	2	8	2	8	y	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.00	0	5	0	5	n	0.14	1	6	1	6	n	ENSMUSG00000047022.19	Mipol1	chr12	protein_coding	mirror-image polydactyly 1
novel_NIR_4395	chr12	57277397	57281367	+	57277397	57352797	A3SS	ENSMUST00000150292.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000047022.19	Mipol1	chr12	protein_coding	mirror-image polydactyly 1
novel_NIR_4396	chr12	57277397	57294418	+	57277397	57285149	3pMXE	ENSMUST00000139049.2	novel	0.03	1	30	1	30	n	0.00	0	18	0	18	n	0.08	3	36	3	36	n	0.00	0	37	0	37	n	0.03	1	32	1	32	n	0.03	1	33	1	33	n	0.27	9	24	9	24	y	0.00	0	24	0	24	n	0.00	0	19	0	19	n	0.06	2	33	2	33	n	0.00	0	26	0	26	n	0.02	1	41	1	41	n	ENSMUSG00000079104.5	Prps1l3	chr12	protein_coding	phosphoribosyl pyrophosphate synthetase 1-like 3
novel_NIR_4397	chr12	57277397	57294418	+	57277397	57350131	A3SS	ENSMUST00000153755.8	novel	0.11	1	8	1	8	n	0.00	0	3	0	3	n	0.50	3	3	3	3	y	0.00	0	8	0	8	n	0.17	1	5	1	5	n	0.33	1	2	1	2	n	0.64	9	5	9	5	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.00	0	5	0	5	n	0.14	1	6	1	6	n	ENSMUSG00000047022.19	Mipol1	chr12	protein_coding	mirror-image polydactyly 1
novel_NIR_4398	chr12	57277397	57294418	+	57277397	57352797	A3SS	ENSMUST00000150292.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	0.50	1	1	1	1	n	1.00	9	0	9	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000047022.19	Mipol1	chr12	protein_coding	mirror-image polydactyly 1
novel_NIR_4399	chr12	57411020	57415229	+	57411020	57413236	3pMXE	ENSMUST00000128945.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000047022.19	Mipol1	chr12	protein_coding	mirror-image polydactyly 1
novel_NIR_4400	chr12	57411020	57415229	+	57411020	57461102	A3SS	ENSMUST00000145003.8	novel	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.29	2	5	2	5	y	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	ENSMUSG00000047022.19	Mipol1	chr12	protein_coding	mirror-image polydactyly 1
novel_NIR_4401	chr12	57593582	57622588	+	57611028	57622588	5pMXE	ENSMUST00000101398.10	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	ENSMUSG00000046782.15	Ttc6	chr12	protein_coding	tetratricopeptide repeat domain 6
novel_NIR_4402	chr12	57720607	57721020	+	57720607	57721385	A3SS	ENSMUST00000172939.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000046782.15	Ttc6	chr12	protein_coding	tetratricopeptide repeat domain 6
novel_NIR_4403	chr12	57771665	57772358	+	57760927	57772358	A5SS	ENSMUST00000172939.8	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.20	1	4	1	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000046782.15	Ttc6	chr12	protein_coding	tetratricopeptide repeat domain 6
novel_NIR_4404	chr12	59025349	59031918	-	59025349	59029354	5pMXE	ENSMUST00000169976.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	ENSMUSG00000020986.14	Sec23a	chr12	protein_coding	SEC23 homolog A, COPII coat complex component
novel_NIR_4405	chr12	59027054	59029354	-	59025349	59029354	A3SS	ENSMUST00000169976.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020986.14	Sec23a	chr12	protein_coding	SEC23 homolog A, COPII coat complex component
novel_NIR_4406	chr12	59098494	59106190	-	59098494	59106042	A5SS	ENSMUST00000217660.2	novel	0.50	3	3	3	3	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.29	2	5	2	5	y	0.80	4	1	4	1	y	0.25	2	6	2	6	y	ENSMUSG00000020993.10	Trappc6b	chr12	protein_coding	trafficking protein particle complex 6B
novel_NIR_4407	chr12	59151347	59166160	+	59151347	59154625	3pMXE	ENSMUST00000221093.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000021000.18	Mia2	chr12	protein_coding	MIA SH3 domain ER export factor 2
novel_NIR_4408	chr12	59166342	59182850	+	59176682	59182850	5pMXE	ENSMUST00000175912.8	novel	0.19	5	22	5	22	y	0.09	2	21	2	21	n	0.35	6	11	6	11	y	0.06	2	32	2	32	n	0.08	5	56	5	56	n	0.00	0	12	0	12	n	0.00	0	59	0	59	n	0.09	3	32	3	32	n	0.00	0	23	0	23	n	0.09	8	78	8	78	n	0.00	0	30	0	30	n	0.11	7	54	7	54	n	ENSMUSG00000021000.18	Mia2	chr12	protein_coding	MIA SH3 domain ER export factor 2
novel_NIR_4409	chr12	59166342	59182850	+	59177681	59182850	5pMXE	ENSMUST00000177225.8	novel	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	6	0	6	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	8	0	8	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	ENSMUSG00000021000.18	Mia2	chr12	protein_coding	MIA SH3 domain ER export factor 2
novel_NIR_4410	chr12	59166342	59182850	+	59177905	59182850	5pMXE	ENSMUST00000177460.8	novel	0.10	5	46	5	46	n	0.07	2	25	2	25	n	0.19	6	26	6	26	y	0.03	2	67	2	67	n	0.07	5	67	5	67	n	0.00	0	17	0	17	n	0.00	0	57	0	57	n	0.11	3	24	3	24	n	0.00	0	26	0	26	n	0.10	8	69	8	69	n	0.00	0	28	0	28	n	0.16	7	37	7	37	y	ENSMUSG00000021000.18	Mia2	chr12	protein_coding	MIA SH3 domain ER export factor 2
novel_NIR_4411	chr12	59166342	59182850	+	59178390	59182850	5pMXE	ENSMUST00000176464.8	novel	0.12	5	35	5	35	n	0.07	2	25	2	25	n	0.07	6	80	6	80	n	0.05	2	35	2	35	n	0.10	5	47	5	47	n	0.00	0	35	0	35	n	0.00	0	35	0	35	n	0.08	3	34	3	34	n	0.00	0	20	0	20	n	0.18	8	36	8	36	y	0.00	0	27	0	27	n	0.15	7	40	7	40	y	ENSMUSG00000021000.18	Mia2	chr12	protein_coding	MIA SH3 domain ER export factor 2
novel_NIR_4412	chr12	59177315	59182850	+	59177681	59182850	A5SS	ENSMUST00000177225.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000021000.18	Mia2	chr12	protein_coding	MIA SH3 domain ER export factor 2
novel_NIR_4413	chr12	59179994	59182850	+	59177681	59182850	A5SS	ENSMUST00000177225.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	ENSMUSG00000021000.18	Mia2	chr12	protein_coding	MIA SH3 domain ER export factor 2
novel_NIR_4414	chr12	59219378	59226636	+	59219378	59230973	A3SS	ENSMUST00000177222.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000021000.18	Mia2	chr12	protein_coding	MIA SH3 domain ER export factor 2
novel_NIR_4415	chr12	59220974	59223119	+	59220974	59226636	A3SS	ENSMUST00000177225.8	novel	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	14	0	14	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.28	5	13	5	13	y	ENSMUSG00000021000.18	Mia2	chr12	protein_coding	MIA SH3 domain ER export factor 2
novel_NIR_4416	chr12	59226335	59226636	+	59220974	59226636	A5SS	ENSMUST00000177225.8	novel	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.25	2	6	2	6	y	0.09	1	10	1	10	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	14	0	14	n	0.25	1	3	1	3	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.13	2	13	2	13	n	0.24	4	13	4	13	y	ENSMUSG00000021000.18	Mia2	chr12	protein_coding	MIA SH3 domain ER export factor 2
novel_NIR_4417	chr12	64969188	64969456	+	64969188	64970281	A3SS	ENSMUST00000058135.6	novel	0.24	4	13	4	13	y	0.00	0	8	0	8	n	0.17	3	15	3	15	y	0.33	3	6	3	6	y	0.50	5	5	5	5	y	0.18	2	9	2	9	y	0.30	3	7	3	7	y	0.67	2	1	2	1	y	0.33	2	4	2	4	y	0.18	2	9	2	9	y	0.00	0	2	0	2	n	0.00	0	9	0	9	n	ENSMUSG00000047227.6	Gm527	chr12	protein_coding	predicted gene 527
novel_NIR_4418	chr12	65017029	65023469	+	65017029	65023476	A3SS	ENSMUST00000221836.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035614.12	Togaram1	chr12	protein_coding	TOG array regulator of axonemal microtubules 1
novel_NIR_4419	chr12	65098532	65100060	+	65095054	65100060	A5SS	ENSMUST00000120580.8	novel	0.04	1	27	1	27	n	0.00	0	25	0	25	n	0.00	0	45	0	45	n	0.00	0	23	0	23	n	0.03	1	39	1	39	n	0.20	2	8	2	8	y	0.00	0	36	0	36	n	0.00	0	18	0	18	n	0.00	0	32	0	32	n	0.00	0	36	0	36	n	0.00	0	22	0	22	n	0.00	0	44	0	44	n	ENSMUSG00000035597.20	Prpf39	chr12	protein_coding	pre-mRNA processing factor 39
novel_NIR_4420	chr12	65116826	65117546	-	65116826	65120449	A5SS	ENSMUST00000222467.2	novel	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	8	0	8	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	ENSMUSG00000020949.10	Fkbp3	chr12	protein_coding	FK506 binding protein 3
novel_NIR_4421	chr12	69229939	69230053	-	69229939	69232628	A5SS	ENSMUST00000223192.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	0.60	3	2	3	2	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000113149.2	Gm49383	chr12	protein_coding	predicted gene, 49383
novel_NIR_4422	chr12	69229939	69230214	-	69229939	69230439	A5SS	ENSMUST00000110620.2	novel	0.18	11	51	11	51	y	0.15	12	66	12	66	y	0.35	56	102	56	102	y	0.17	8	38	8	38	y	0.17	21	102	21	102	y	0.34	28	55	28	55	y	0.18	14	65	14	65	y	0.29	27	65	27	65	y	0.13	7	45	7	45	n	0.14	9	57	9	57	n	0.16	13	67	13	67	y	0.11	7	54	7	54	n	ENSMUSG00000049751.7	Rpl36al	chr12	protein_coding	ribosomal protein L36A-like
novel_NIR_4423	chr12	69229939	69230214	-	69229939	69232628	A5SS	ENSMUST00000223192.2	novel	1.00	11	0	11	0	y	1.00	12	0	12	0	y	1.00	56	0	56	0	y	1.00	8	0	8	0	y	1.00	21	0	21	0	y	1.00	28	0	28	0	y	1.00	14	0	14	0	y	0.93	27	2	27	2	y	1.00	7	0	7	0	y	1.00	9	0	9	0	y	1.00	13	0	13	0	y	1.00	7	0	7	0	y	ENSMUSG00000113149.2	Gm49383	chr12	protein_coding	predicted gene, 49383
novel_NIR_4424	chr12	69229939	69230528	-	69229939	69232628	A5SS	ENSMUST00000223192.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.67	4	2	4	2	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000113149.2	Gm49383	chr12	protein_coding	predicted gene, 49383
novel_NIR_4425	chr12	69229939	69230639	-	69229939	69232628	A5SS	ENSMUST00000223192.2	novel	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	7	0	7	0	y	1.00	1	0	1	0	n	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000113149.2	Gm49383	chr12	protein_coding	predicted gene, 49383
novel_NIR_4426	chr12	69237168	69243266	-	69237168	69239582	A5SS&ES	ENSMUST00000222699.2	novel	0.00	0	14	0	14	n	0.14	1	6	1	6	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.00	0	22	0	22	n	0.00	0	1	0	1	n	0.18	2	9	2	9	y	0.00	0	6	0	6	n	0.06	1	16	1	16	n	0.00	0	15	0	15	n	0.00	0	14	0	14	n	0.00	0	15	0	15	n	ENSMUSG00000113786.2	Gm49384	chr12	protein_coding	predicted gene, 49384
novel_NIR_4427	chr12	69244075	69244502	+	69244389	69244502	A5SS	ENSMUST00000181850.3	novel	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.00	0	2	0	2	n	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.14	1	6	1	6	n	0.00	0	2	0	2	n	ENSMUSG00000097061.3	9330151L19Rik	chr12	lncRNA	RIKEN cDNA 9330151L19 gene
novel_NIR_4428	chr12	69244378	69244502	+	69244389	69244502	A5SS	ENSMUST00000181850.3	novel	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.50	2	2	2	2	y	ENSMUSG00000097061.3	9330151L19Rik	chr12	lncRNA	RIKEN cDNA 9330151L19 gene
novel_NIR_4429	chr12	69369121	69371006	-	69370670	69371006	3pMXE	ENSMUST00000221722.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020982.10	Nemf	chr12	protein_coding	nuclear export mediator factor
novel_NIR_4430	chr12	69395711	69397631	-	69395711	69399081	A5SS	ENSMUST00000021368.10	novel	0.09	1	10	1	10	n	0.00	0	9	0	9	n	0.08	3	36	3	36	n	0.05	1	18	1	18	n	0.11	4	32	4	32	n	0.00	0	21	0	21	n	0.00	0	20	0	20	n	0.00	0	16	0	16	n	0.00	0	27	0	27	n	0.15	3	17	3	17	y	0.00	0	10	0	10	n	0.05	1	18	1	18	n	ENSMUSG00000020982.10	Nemf	chr12	protein_coding	nuclear export mediator factor
novel_NIR_4431	chr12	69395711;69397740	69397631;69399081	-	69395711	69399081	cassetteExon	ENSMUST00000021368.10	novel	0.09	1.0	10	1;1	10	n	0.00	0.0	9	0;0	9	n	0.16	7.0	36	3;11	36	y	0.03	0.5	18	1;0	18	n	0.11	4.0	32	4;4	32	n	0.05	1.0	21	0;2	21	n	0.09	2.0	20	0;4	20	n	0.03	0.5	16	0;1	16	n	0.00	0.0	27	0;0	27	n	0.08	1.5	17	3;0	17	n	0.00	0.0	10	0;0	10	n	0.05	1.0	18	1;1	18	n	ENSMUSG00000020982.10	Nemf	chr12	protein_coding	nuclear export mediator factor
novel_NIR_4432	chr12	69397740	69399081	-	69395711	69399081	A3SS	ENSMUST00000021368.10	novel	0.09	1	10	1	10	n	0.00	0	9	0	9	n	0.23	11	36	11	36	n	0.00	0	18	0	18	n	0.11	4	32	4	32	n	0.09	2	21	2	21	n	0.17	4	20	4	20	y	0.06	1	16	1	16	n	0.00	0	27	0	27	n	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.05	1	18	1	18	n	ENSMUSG00000020982.10	Nemf	chr12	protein_coding	nuclear export mediator factor
novel_NIR_4433	chr12	69663082	69663628	-	69663138	69663628	A3SS	ENSMUST00000035773.14	novel	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	22	0	22	n	0.00	0	9	0	9	n	0.00	0	18	0	18	n	0.00	0	7	0	7	n	0.00	0	22	0	22	n	0.00	0	16	0	16	n	0.00	0	18	0	18	n	0.17	2	10	2	10	y	0.00	0	12	0	12	n	0.00	0	23	0	23	n	ENSMUSG00000034801.14	Sos2	chr12	protein_coding	SOS Ras/Rho guanine nucleotide exchange factor 2
novel_NIR_4434	chr12	69687034	69695300	-	69687034	69695226	A5SS	ENSMUST00000035773.14	novel	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.18	2	9	2	9	y	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	ENSMUSG00000034801.14	Sos2	chr12	protein_coding	SOS Ras/Rho guanine nucleotide exchange factor 2
novel_NIR_4435	chr12	69771788	69772216	+	69771788	69772229	A3SS	ENSMUST00000220916.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	ENSMUSG00000054894.7	Dmac2l	chr12	protein_coding	distal membrane arm assembly complex 2 like
novel_NIR_4436	chr12	69771788	69772321	+	69771788	69772229	A3SS	ENSMUST00000220916.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	ENSMUSG00000054894.7	Dmac2l	chr12	protein_coding	distal membrane arm assembly complex 2 like
novel_NIR_4437	chr12	69771788;69772328	69772321;69787673	+	69771788	69787673	cassetteExon	ENSMUST00000220539.2	novel	1.00	0.5	0	0;1	0	n	0.67	2.0	1	0;4	1	n	0.00	0.0	1	0;0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	0.5	1	0;1	1	n	1.00	0.5	0	0;1	0	n	-	-	-	-	-	-	0.00	0.0	3	0;0	3	n	-	-	-	-	-	-	0.33	0.5	1	0;1	1	n	0.56	2.5	2	2;3	2	y	ENSMUSG00000054894.7	Dmac2l	chr12	protein_coding	distal membrane arm assembly complex 2 like
novel_NIR_4438	chr12	69771788;69772328	69772321;69787673	+	69771788;69784835	69784725;69787673	MXE	ENSMUST00000021372.6	novel	0.05	0.5	9.5	0;1	5;14	n	0.15	2.0	11.5	0;4	5;18	n	0.00	0.0	26.0	0;0	19;33	n	0.00	0.0	16.0	0;0	4;28	n	0.00	0.0	21.0	0;0	9;33	n	0.03	0.5	16.5	0;1	8;25	n	0.03	0.5	17.5	0;1	10;25	n	0.00	0.0	11.5	0;0	9;14	n	0.00	0.0	9.0	0;0	6;12	n	0.00	0.0	13.0	0;0	6;20	n	0.05	0.5	10.0	0;1	5;15	n	0.26	2.5	7.0	2;3	0;14	y	ENSMUSG00000054894.7	Dmac2l	chr12	protein_coding	distal membrane arm assembly complex 2 like
novel_NIR_4439	chr12	69772328	69787673	+	69771788	69787673	A5SS	ENSMUST00000220539.2	novel	1.00	1	0	1	0	n	0.80	4	1	4	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.60	3	2	3	2	n	ENSMUSG00000054894.7	Dmac2l	chr12	protein_coding	distal membrane arm assembly complex 2 like
novel_NIR_4440	chr12	69772328	69787673	+	69772328	69784725	3pMXE	ENSMUST00000222950.2	novel	0.25	1	3	1	3	n	0.25	4	12	4	12	y	0.00	0	18	0	18	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.10	1	9	1	9	n	0.08	1	11	1	11	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	22	0	22	n	0.09	1	10	1	10	n	0.25	3	9	3	9	y	ENSMUSG00000054894.7	Dmac2l	chr12	protein_coding	distal membrane arm assembly complex 2 like
novel_NIR_4441	chr12	69772328	69787673	+	69772328;69784835	69784725;69787673	ES	ENSMUST00000220916.2	novel	0.11	1	8.5	1	3;14	n	0.21	4	15.0	4	12;18	y	0.00	0	25.5	0	18;33	n	0.00	0	19.0	0	10;28	n	0.00	0	23.0	0	13;33	n	0.06	1	17.0	1	9;25	n	0.05	1	18.0	1	11;25	n	0.00	0	10.0	0	6;14	n	0.00	0	10.0	0	8;12	n	0.00	0	21.0	0	22;20	n	0.07	1	12.5	1	10;15	n	0.21	3	11.5	3	9;14	y	ENSMUSG00000054894.7	Dmac2l	chr12	protein_coding	distal membrane arm assembly complex 2 like
novel_NIR_4442	chr12	69772328	69787673	+	69784835	69787673	A5SS&ES	ENSMUST00000021372.6	novel	0.07	1	14	1	14	n	0.18	4	18	4	18	y	0.00	0	33	0	33	n	0.00	0	28	0	28	n	0.00	0	33	0	33	n	0.04	1	25	1	25	n	0.04	1	25	1	25	n	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	20	0	20	n	0.06	1	15	1	15	n	0.18	3	14	3	14	n	ENSMUSG00000054894.7	Dmac2l	chr12	protein_coding	distal membrane arm assembly complex 2 like
novel_NIR_4443	chr12	69772328	69787673	+	69784835	69787673	A5SS&ES	ENSMUST00000220460.2	novel	0.07	1	14	1	14	n	0.18	4	18	4	18	n	0.00	0	33	0	33	n	0.00	0	28	0	28	n	0.00	0	33	0	33	n	0.04	1	25	1	25	n	0.04	1	25	1	25	n	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	20	0	20	n	0.06	1	15	1	15	n	0.18	3	14	3	14	y	ENSMUSG00000054894.7	Dmac2l	chr12	protein_coding	distal membrane arm assembly complex 2 like
novel_NIR_4444	chr12	69863163	69864796	-	69863167	69864796	A3SS	ENSMUST00000110567.8	novel	0.00	0	28	0	28	n	0.17	4	19	4	19	y	0.05	2	40	2	40	n	0.06	2	31	2	31	n	0.07	2	28	2	28	n	0.03	1	30	1	30	n	0.00	0	30	0	30	n	0.00	0	17	0	17	n	0.05	1	18	1	18	n	0.00	0	30	0	30	n	0.00	0	20	0	20	n	0.00	0	39	0	39	n	ENSMUSG00000034761.16	Map4k5	chr12	protein_coding	mitogen-activated protein kinase kinase kinase kinase 5
novel_NIR_4445	chr12	69865272	69869577	-	69865272	69865583	5pMXE	ENSMUST00000153550.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.75	3	1	3	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000034761.16	Map4k5	chr12	protein_coding	mitogen-activated protein kinase kinase kinase kinase 5
novel_NIR_4446	chr12	69865272	69869577	-	69865272;69867716	69867714;69869577	ES	ENSMUST00000110567.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0.0	3	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034761.16	Map4k5	chr12	protein_coding	mitogen-activated protein kinase kinase kinase kinase 5
novel_NIR_4447	chr12	69865272	69869577	-	69865275	69869577	A3SS	ENSMUST00000171211.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034761.16	Map4k5	chr12	protein_coding	mitogen-activated protein kinase kinase kinase kinase 5
novel_NIR_4448	chr12	69978446	69983849	+	69978446;69981694	69978991;69983849	ES	ENSMUST00000222141.2	novel	0.50	2	2.0	2	2;2	y	0.00	0	3.0	0	3;3	n	0.00	0	7.0	0	10;4	n	0.00	0	3.5	0	5;2	n	0.00	0	4.5	0	3;6	n	0.00	0	2.5	0	4;1	n	0.00	0	6.0	0	5;7	n	0.00	0	1.0	0	2;0	n	0.00	0	2.5	0	3;2	n	0.00	0	1.0	0	2;0	n	0.00	0	0.5	0	1;0	n	0.00	0	5.5	0	3;8	n	ENSMUSG00000021066.10	Atl1	chr12	protein_coding	atlastin GTPase 1
novel_NIR_4449	chr12	70006246	70010002	+	70006246;70007336	70007322;70010002	ES	ENSMUST00000021466.10	novel	0.50	2	2.0	2	2;2	y	0.00	0	8.5	0	8;9	n	0.41	6	8.5	6	8;9	y	0.00	0	3.0	0	3;3	n	0.00	0	7.5	0	6;9	n	0.00	0	8.5	0	10;7	n	0.00	0	8.0	0	10;6	n	0.00	0	3.0	0	4;2	n	0.00	0	5.5	0	5;6	n	0.00	0	1.5	0	1;2	n	0.00	0	11.0	0	9;13	n	0.00	0	5.0	0	5;5	n	ENSMUSG00000021066.10	Atl1	chr12	protein_coding	atlastin GTPase 1
novel_NIR_4450	chr12	70006246	70010002	+	70006262	70010002	A5SS	ENSMUST00000222141.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021066.10	Atl1	chr12	protein_coding	atlastin GTPase 1
novel_NIR_4451	chr12	70257928	70263337	-	70261290	70263337	3pMXE	ENSMUST00000166609.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	9	0	9	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021069.18	Pygl	chr12	protein_coding	liver glycogen phosphorylase
novel_NIR_4452	chr12	70263001	70263337	-	70261290	70263337	A3SS	ENSMUST00000166609.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021069.18	Pygl	chr12	protein_coding	liver glycogen phosphorylase
novel_NIR_4453	chr12	70276427	70277745	-	70269700	70277745	A3SS	ENSMUST00000161083.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	ENSMUSG00000021069.18	Pygl	chr12	protein_coding	liver glycogen phosphorylase
novel_NIR_4454	chr12	70872347	70903190	+	70872347	70910651	A3SS	ENSMUST00000057859.9	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	ENSMUSG00000048285.10	Frmd6	chr12	protein_coding	FERM domain containing 6
novel_NIR_4455	chr12	71025589	71025675	+	71025589	71035198	A3SS	ENSMUST00000162851.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.25	1	3	1	3	n	1.00	2	0	2	0	y	ENSMUSG00000060073.10	Psma3	chr12	protein_coding	proteasome subunit alpha 3
novel_NIR_4456	chr12	71025589	71031267	+	71025589	71035198	A3SS	ENSMUST00000162851.8	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000060073.10	Psma3	chr12	protein_coding	proteasome subunit alpha 3
novel_NIR_4457	chr12	71025589;71025782	71025675;71030098	+	71025589	71030098	cassetteExon	ENSMUST00000071704.4	novel	0.00	0.0	70	0;0	70	n	0.00	0.0	42	0;0	42	n	0.00	0.0	50	0;0	50	n	0.02	0.5	29	1;0	29	n	0.01	1.0	72	2;0	72	n	0.00	0.0	25	0;0	25	n	0.01	0.5	72	1;0	72	n	0.00	0.0	34	0;0	34	n	0.00	0.0	50	0;0	50	n	0.18	11.5	52	3;20	52	y	0.01	0.5	53	1;0	53	n	0.01	1.0	75	2;0	75	n	ENSMUSG00000060073.10	Psma3	chr12	protein_coding	proteasome subunit alpha 3
novel_NIR_4458	chr12	71025613	71030098	+	71025613	71030093	A3SS	ENSMUST00000162626.8	novel	0.00	0	4	0	4	n	0.08	1	11	1	11	n	0.09	1	10	1	10	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.29	2	5	2	5	y	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.11	1	8	1	8	n	0.30	3	7	3	7	y	0.00	0	2	0	2	n	0.00	0	8	0	8	n	ENSMUSG00000060073.10	Psma3	chr12	protein_coding	proteasome subunit alpha 3
novel_NIR_4459	chr12	71025782	71030093	+	71021541	71030093	A5SS	ENSMUST00000160864.8	novel	1.00	3	0	3	0	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.60	3	2	3	2	y	0.25	1	3	1	3	n	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.60	3	2	3	2	y	0.00	0	2	0	2	n	0.57	4	3	4	3	y	ENSMUSG00000060073.10	Psma3	chr12	protein_coding	proteasome subunit alpha 3
novel_NIR_4460	chr12	71025782	71030093	+	71025613	71030093	A5SS	ENSMUST00000162626.8	novel	0.43	3	4	3	4	y	0.08	1	11	1	11	n	0.00	0	10	0	10	n	0.43	3	4	3	4	y	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.12	1	7	1	7	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.30	3	7	3	7	y	0.00	0	2	0	2	n	0.33	4	8	4	8	y	ENSMUSG00000060073.10	Psma3	chr12	protein_coding	proteasome subunit alpha 3
novel_NIR_4461	chr12	71034253	71035198	+	71025589	71035198	A5SS	ENSMUST00000162851.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	ENSMUSG00000060073.10	Psma3	chr12	protein_coding	proteasome subunit alpha 3
novel_NIR_4462	chr12	71170460	71172251	-	71170460	71172183	A5SS	ENSMUST00000221178.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021079.17	Timm9	chr12	protein_coding	translocase of inner mitochondrial membrane 9
novel_NIR_4463	chr12	71173171	71179281	-	71173171	71183329	A5SS	ENSMUST00000021486.10	novel	0.00	0	17	0	17	n	0.00	0	16	0	16	n	0.00	0	22	0	22	n	0.00	0	22	0	22	n	0.05	1	21	1	21	n	1.00	2	0	2	0	y	0.07	2	27	2	27	n	0.07	1	14	1	14	n	0.00	0	11	0	11	n	0.20	5	20	5	20	y	0.13	3	20	3	20	n	0.07	2	27	2	27	n	ENSMUSG00000021079.17	Timm9	chr12	protein_coding	translocase of inner mitochondrial membrane 9
novel_NIR_4464	chr12	71178860	71180674	-	71178860	71179281	A5SS&ES	ENSMUST00000166120.9	novel	0.03	1	38	1	38	n	0.04	1	27	1	27	n	0.23	5	17	5	17	y	0.13	4	27	4	27	n	0.14	6	36	6	36	n	0.07	1	13	1	13	n	0.16	6	32	6	32	y	0.00	0	13	0	13	n	0.07	3	43	3	43	n	0.05	2	36	2	36	n	0.15	5	28	5	28	y	0.10	5	43	5	43	n	ENSMUSG00000021079.17	Timm9	chr12	protein_coding	translocase of inner mitochondrial membrane 9
novel_NIR_4465	chr12	71178860	71180674	-	71178860	71183329	A5SS	ENSMUST00000221892.2	novel	0.05	1	20	1	20	n	0.04	1	27	1	27	n	0.19	5	21	5	21	y	0.13	4	26	4	26	n	0.20	6	24	6	24	y	0.08	1	11	1	11	n	0.11	6	47	6	47	n	0.00	0	19	0	19	n	0.08	3	33	3	33	n	0.04	2	43	2	43	n	0.17	5	25	5	25	y	0.15	5	28	5	28	y	ENSMUSG00000021079.17	Timm9	chr12	protein_coding	translocase of inner mitochondrial membrane 9
novel_NIR_4466	chr12	71179416	71180674	-	71179416	71183329	A5SS	ENSMUST00000166120.9	novel	0.55	18	15	18	15	y	0.67	6	3	6	3	y	0.56	5	4	5	4	y	0.61	17	11	17	11	n	0.59	22	15	22	15	y	0.44	4	5	4	5	y	0.68	17	8	17	8	y	0.40	6	9	6	9	y	0.59	20	14	20	14	y	0.35	7	13	7	13	y	0.68	19	9	19	9	y	0.45	15	18	15	18	y	ENSMUSG00000021079.17	Timm9	chr12	protein_coding	translocase of inner mitochondrial membrane 9
novel_NIR_4467	chr12	71179532	71180674	-	71179532	71183329	A5SS	ENSMUST00000221367.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	4	0	4	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000021079.17	Timm9	chr12	protein_coding	translocase of inner mitochondrial membrane 9
novel_NIR_4468	chr12	71179572	71180674	-	71179572	71183329	A5SS	ENSMUST00000220482.2	novel	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.67	8	4	8	4	y	0.25	3	9	3	9	n	0.45	10	12	10	12	y	0.83	5	1	5	1	y	0.54	14	12	14	12	y	0.00	0	7	0	7	n	0.56	9	7	9	7	y	0.67	16	8	16	8	y	0.43	9	12	9	12	y	0.11	2	16	2	16	n	ENSMUSG00000021079.17	Timm9	chr12	protein_coding	translocase of inner mitochondrial membrane 9
novel_NIR_4469	chr12	71241240	71356177	+	71241240	71289718	3pMXE	ENSMUST00000045907.16	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.29	2	5	2	5	y	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.33	1	2	1	2	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000034601.18	2700049A03Rik	chr12	protein_coding	RIKEN cDNA 2700049A03 gene
novel_NIR_4470	chr12	71401380	71403481	+	71402388	71403481	5pMXE	ENSMUST00000221650.2	novel	0.00	0	21	0	21	n	0.06	1	17	1	17	n	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.05	1	18	1	18	n	0.18	2	9	2	9	y	0.00	0	27	0	27	n	0.00	0	21	0	21	n	0.00	0	17	0	17	n	0.05	1	21	1	21	n	0.00	0	29	0	29	n	0.00	0	25	0	25	n	ENSMUSG00000113441.2	Gm40438	chr12	lncRNA	predicted gene, 40438
novel_NIR_4471	chr12	71403567	71404905	+	71403567	71477981	A3SS	ENSMUST00000221650.2	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.20	1	4	1	4	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.60	3	2	3	2	y	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	ENSMUSG00000113441.2	Gm40438	chr12	lncRNA	predicted gene, 40438
novel_NIR_4472	chr12	71403567	71405168	+	71403567	71477981	A3SS	ENSMUST00000221650.2	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	1.00	1	0	1	0	n	0.17	1	5	1	5	n	0.50	2	2	2	2	y	0.14	1	6	1	6	n	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	ENSMUSG00000113441.2	Gm40438	chr12	lncRNA	predicted gene, 40438
novel_NIR_4473	chr12	71403567	71407786	+	71403567	71477981	A3SS	ENSMUST00000221650.2	novel	0.25	2	6	2	6	y	0.50	2	2	2	2	y	0.60	3	2	3	2	y	0.50	3	3	3	3	y	0.33	2	4	2	4	y	-	-	-	-	-	-	0.17	1	5	1	5	n	0.71	5	2	5	2	y	0.00	0	6	0	6	n	0.43	3	4	3	4	y	0.33	2	4	2	4	y	0.50	3	3	3	3	y	ENSMUSG00000113441.2	Gm40438	chr12	lncRNA	predicted gene, 40438
novel_NIR_4474	chr12	71403567	71408321	+	71403567	71477981	A3SS	ENSMUST00000221650.2	novel	0.14	1	6	1	6	n	0.33	1	2	1	2	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.20	1	4	1	4	n	1.00	3	0	3	0	y	0.17	1	5	1	5	n	0.33	1	2	1	2	n	0.25	2	6	2	6	y	0.20	1	4	1	4	n	0.20	1	4	1	4	n	0.25	1	3	1	3	n	ENSMUSG00000113441.2	Gm40438	chr12	lncRNA	predicted gene, 40438
novel_NIR_4475	chr12	71403567	71408699	+	71403567	71477981	A3SS	ENSMUST00000221650.2	novel	0.62	10	6	10	6	y	0.80	8	2	8	2	y	0.71	5	2	5	2	y	0.40	2	3	2	3	y	0.73	11	4	11	4	y	1.00	7	0	7	0	y	0.38	3	5	3	5	y	0.78	7	2	7	2	y	0.45	5	6	5	6	y	0.75	12	4	12	4	y	0.83	19	4	19	4	y	0.84	16	3	16	3	y	ENSMUSG00000113441.2	Gm40438	chr12	lncRNA	predicted gene, 40438
novel_NIR_4476	chr12	71403567	71408704	+	71403567	71477981	A3SS	ENSMUST00000221650.2	novel	0.50	6	6	6	6	y	0.71	5	2	5	2	y	0.71	5	2	5	2	y	0.25	1	3	1	3	n	0.00	0	4	0	4	n	1.00	1	0	1	0	n	0.55	6	5	6	5	y	0.50	2	2	2	2	y	0.25	2	6	2	6	y	0.20	1	4	1	4	n	0.56	5	4	5	4	y	0.70	7	3	7	3	y	ENSMUSG00000113441.2	Gm40438	chr12	lncRNA	predicted gene, 40438
novel_NIR_4477	chr12	71403567	71409011	+	71403567	71477981	A3SS	ENSMUST00000221650.2	novel	0.14	1	6	1	6	n	0.71	5	2	5	2	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.14	1	6	1	6	n	0.20	1	4	1	4	n	0.20	1	4	1	4	n	0.40	2	3	2	3	y	ENSMUSG00000113441.2	Gm40438	chr12	lncRNA	predicted gene, 40438
novel_NIR_4478	chr12	71403567	71415398	+	71403567	71477981	A3SS	ENSMUST00000221650.2	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.33	2	4	2	4	y	0.25	1	3	1	3	n	ENSMUSG00000113441.2	Gm40438	chr12	lncRNA	predicted gene, 40438
novel_NIR_4479	chr12	71403567	71421742	+	71403567	71477981	A3SS	ENSMUST00000221650.2	novel	0.00	0	6	0	6	n	0.33	1	2	1	2	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.43	3	4	3	4	y	-	-	-	-	-	-	0.29	2	5	2	5	y	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	ENSMUSG00000113441.2	Gm40438	chr12	lncRNA	predicted gene, 40438
novel_NIR_4480	chr12	71442870	71477981	+	71403567	71477981	A5SS	ENSMUST00000221650.2	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.33	2	4	2	4	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	ENSMUSG00000113441.2	Gm40438	chr12	lncRNA	predicted gene, 40438
novel_NIR_4481	chr12	71483513	71525227	+	71483513	71545198	A3SS	ENSMUST00000221650.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000113441.2	Gm40438	chr12	lncRNA	predicted gene, 40438
novel_NIR_4482	chr12	71483513	71564487	+	71483513	71545198	3pMXE	ENSMUST00000221650.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000113441.2	Gm40438	chr12	lncRNA	predicted gene, 40438
novel_NIR_4483	chr12	71483513	71569363	+	71483513	71545198	3pMXE	ENSMUST00000221650.2	novel	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000113441.2	Gm40438	chr12	lncRNA	predicted gene, 40438
novel_NIR_4484	chr12	71483513	71569363	+	71535200	71569363	5pMXE	ENSMUST00000222756.2	novel	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000113630.2	4930404H11Rik	chr12	lncRNA	RIKEN cDNA 4930404H11 gene
novel_NIR_4485	chr12	71483513	71580468	+	71483513	71545198	3pMXE	ENSMUST00000221650.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	ENSMUSG00000113441.2	Gm40438	chr12	lncRNA	predicted gene, 40438
novel_NIR_4486	chr12	71580726	71585654	+	71580726	71588884	A3SS	ENSMUST00000222756.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	n	-	-	-	-	-	-	0.25	1	3	1	3	n	ENSMUSG00000113630.2	4930404H11Rik	chr12	lncRNA	RIKEN cDNA 4930404H11 gene
novel_NIR_4487	chr12	71580726;71585814	71585654;71588884	+	71580726	71588884	cassetteExon	ENSMUST00000222756.2	novel	1.00	1.5	0	3;0	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1.0	0	2;0	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	0.5	0	1;0	0	n	-	-	-	-	-	-	1.00	1.5	0	3;0	0	n	1.00	2.0	0	2;2	0	y	-	-	-	-	-	-	0.14	0.5	3	1;0	3	n	ENSMUSG00000113630.2	4930404H11Rik	chr12	lncRNA	RIKEN cDNA 4930404H11 gene
novel_NIR_4488	chr12	71585814	71588884	+	71587530	71588884	5pMXE	ENSMUST00000220948.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000113630.2	4930404H11Rik	chr12	lncRNA	RIKEN cDNA 4930404H11 gene
novel_NIR_4489	chr12	71589013	71591880	+	71589013	71602421	A3SS	ENSMUST00000222756.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	n	1.00	6	0	6	0	y	0.00	0	1	0	1	n	ENSMUSG00000113630.2	4930404H11Rik	chr12	lncRNA	RIKEN cDNA 4930404H11 gene
novel_NIR_4490	chr12	71589013;71591967	71591880;71602421	+	71589013	71602421	cassetteExon	ENSMUST00000222756.2	novel	1.00	1.0	0	2;0	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	0.5	0	1;0	0	n	1.00	2.5	0	5;0	0	n	1.00	1.0	0	2;0	0	n	1.00	0.5	0	1;0	0	n	1.00	2.5	0	5;0	0	n	1.00	0.5	0	1;0	0	n	1.00	2.0	0	2;2	0	y	1.00	3.0	0	6;0	0	n	0.00	0.0	1	0;0	1	n	ENSMUSG00000113630.2	4930404H11Rik	chr12	lncRNA	RIKEN cDNA 4930404H11 gene
novel_NIR_4491	chr12	71599690	71602421	+	71589013	71602421	A5SS	ENSMUST00000222756.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	ENSMUSG00000113630.2	4930404H11Rik	chr12	lncRNA	RIKEN cDNA 4930404H11 gene
novel_NIR_4492	chr12	71600594	71602421	+	71589013	71602421	A5SS	ENSMUST00000222756.2	novel	1.00	13	0	13	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	16	0	16	0	y	1.00	15	0	15	0	y	1.00	3	0	3	0	y	1.00	7	0	7	0	y	1.00	5	0	5	0	y	1.00	7	0	7	0	y	1.00	14	0	14	0	y	1.00	8	0	8	0	y	0.94	16	1	16	1	y	ENSMUSG00000113630.2	4930404H11Rik	chr12	lncRNA	RIKEN cDNA 4930404H11 gene
novel_NIR_4493	chr12	71877970	71898167	+	71877970	71942501	A3SS	ENSMUST00000223272.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.12	1	7	1	7	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.29	2	5	2	5	y	0.00	0	4	0	4	n	0.00	0	9	0	9	n	ENSMUSG00000034574.11	Daam1	chr12	protein_coding	dishevelled associated activator of morphogenesis 1
novel_NIR_4494	chr12	71898231	71942501	+	71877970	71942501	A5SS	ENSMUST00000223272.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.25	2	6	2	6	y	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	ENSMUSG00000034574.11	Daam1	chr12	protein_coding	dishevelled associated activator of morphogenesis 1
novel_NIR_4495	chr12	71898231	71942501	+	71878105	71942501	A5SS	ENSMUST00000221971.2	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	ENSMUSG00000034574.11	Daam1	chr12	protein_coding	dishevelled associated activator of morphogenesis 1
novel_NIR_4496	chr12	71898231	71942501	+	71936612	71942501	5pMXE	ENSMUST00000221317.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034574.11	Daam1	chr12	protein_coding	dishevelled associated activator of morphogenesis 1
novel_NIR_4497	chr12	71933076	71942501	+	71877970	71942501	A5SS	ENSMUST00000223272.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.12	1	7	1	7	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	7	0	7	n	0.55	6	5	6	5	y	0.20	1	4	1	4	n	0.10	1	9	1	9	n	ENSMUSG00000034574.11	Daam1	chr12	protein_coding	dishevelled associated activator of morphogenesis 1
novel_NIR_4498	chr12	71933076	71942501	+	71878105	71942501	A5SS	ENSMUST00000221971.2	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.33	2	4	2	4	y	0.00	0	6	0	6	n	0.46	6	7	6	7	y	0.20	1	4	1	4	n	0.10	1	9	1	9	n	ENSMUSG00000034574.11	Daam1	chr12	protein_coding	dishevelled associated activator of morphogenesis 1
novel_NIR_4499	chr12	71933076	71942501	+	71936612	71942501	5pMXE	ENSMUST00000221317.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000034574.11	Daam1	chr12	protein_coding	dishevelled associated activator of morphogenesis 1
novel_NIR_4500	chr12	71933284	71942501	+	71877970	71942501	A5SS	ENSMUST00000223272.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.17	2	10	2	10	y	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.18	2	9	2	9	y	ENSMUSG00000034574.11	Daam1	chr12	protein_coding	dishevelled associated activator of morphogenesis 1
novel_NIR_4501	chr12	71933284	71942501	+	71878105	71942501	A5SS	ENSMUST00000221971.2	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.18	2	9	2	9	y	ENSMUSG00000034574.11	Daam1	chr12	protein_coding	dishevelled associated activator of morphogenesis 1
novel_NIR_4502	chr12	71933284	71942501	+	71936612	71942501	5pMXE	ENSMUST00000221317.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000034574.11	Daam1	chr12	protein_coding	dishevelled associated activator of morphogenesis 1
novel_NIR_4503	chr12	72126430	72130693	-	72126430	72131305	A5SS	ENSMUST00000138029.2	novel	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.83	5	1	5	1	y	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000019718.9	L3hypdh	chr12	protein_coding	L-3-hydroxyproline dehydratase (trans-)
novel_NIR_4504	chr12	72126430	72131416	-	72126430	72131305	A5SS	ENSMUST00000138029.2	novel	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000019718.9	L3hypdh	chr12	protein_coding	L-3-hydroxyproline dehydratase (trans-)
novel_NIR_4505	chr12	72584151	72588149	+	72583313	72588149	A5SS	ENSMUST00000044352.8	novel	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.00	0	28	0	28	n	0.29	2	5	2	5	y	0.00	0	26	0	26	n	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.00	0	26	0	26	n	0.00	0	12	0	12	n	0.00	0	17	0	17	n	ENSMUSG00000034501.8	Pcnx4	chr12	protein_coding	pecanex homolog 4
novel_NIR_4506	chr12	72622298	72626078	+	72622314	72626078	A5SS	ENSMUST00000044352.8	novel	0.00	0	5	0	5	n	0.25	2	6	2	6	y	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.14	1	6	1	6	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.10	1	9	1	9	n	ENSMUSG00000034501.8	Pcnx4	chr12	protein_coding	pecanex homolog 4
novel_NIR_4507	chr12	72655768	72659314	-	72655768	72666196	A5SS	ENSMUST00000207585.2	novel	0.83	20	4	20	4	y	0.72	18	7	18	7	y	-	-	-	-	-	-	0.94	32	2	32	2	y	0.82	32	7	32	7	y	0.00	0	2	0	2	n	0.69	20	9	20	9	y	0.45	5	6	5	6	y	0.72	21	8	21	8	y	0.85	51	9	51	9	y	0.81	21	5	21	5	y	0.77	20	6	20	6	y	ENSMUSG00000109482.3	Gm4756	chr12	protein_coding	predicted gene 4756
novel_NIR_4508	chr12	72655768	72659314	-	72655768;72658705	72658490;72659314	ES	ENSMUST00000208039.2	novel	0.21	20	77.0	20	81;73	y	0.23	18	59.5	18	69;50	y	0.00	0	3.5	0	5;2	n	0.22	32	111.0	32	96;126	y	0.23	32	109.0	32	94;124	y	0.00	0	11.5	0	12;11	n	0.16	20	106.0	20	126;86	y	0.12	5	35.5	5	32;39	n	0.16	21	109.0	21	124;94	y	0.25	51	151.5	51	141;162	y	0.19	21	89.0	21	98;80	y	0.20	20	78.0	20	86;70	y	ENSMUSG00000109482.3	Gm4756	chr12	protein_coding	predicted gene 4756
novel_NIR_4509	chr12	72655768	72659314	-	72658705	72659314	3pMXE	ENSMUST00000208307.2	novel	0.22	20	73	20	73	y	0.26	18	50	18	50	y	0.00	0	2	0	2	n	0.20	32	126	32	126	y	0.21	32	124	32	124	y	0.00	0	11	0	11	n	0.19	20	86	20	86	y	0.11	5	39	5	39	n	0.18	21	94	21	94	y	0.24	51	162	51	162	y	0.21	21	80	21	80	y	0.22	20	70	20	70	y	ENSMUSG00000109482.3	Gm4756	chr12	protein_coding	predicted gene 4756
novel_NIR_4510	chr12	72663165	72666196	-	72624656	72666196	A3SS	ENSMUST00000222413.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000109482.3	Gm4756	chr12	protein_coding	predicted gene 4756
novel_NIR_4511	chr12	72663165	72666196	-	72655768	72666196	A3SS	ENSMUST00000207585.2	novel	0.00	0	4	0	4	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.22	2	7	2	7	y	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	ENSMUSG00000109482.3	Gm4756	chr12	protein_coding	predicted gene 4756
novel_NIR_4512	chr12	72674984	72675501	-	72668728	72675501	A3SS	ENSMUST00000207585.2	novel	0.25	3	9	3	9	y	0.00	0	13	0	13	n	0.00	0	1	0	1	n	0.06	1	16	1	16	n	0.13	3	20	3	20	n	0.00	0	1	0	1	n	0.00	0	19	0	19	n	0.25	1	3	1	3	n	0.30	7	16	7	16	n	0.18	7	31	7	31	y	0.23	5	17	5	17	y	0.00	0	16	0	16	n	ENSMUSG00000109482.3	Gm4756	chr12	protein_coding	predicted gene 4756
novel_NIR_4513	chr12	72826400	72830457	+	72804465	72830457	A5SS	ENSMUST00000221628.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021096.12	Ppm1a	chr12	protein_coding	protein phosphatase 1A, magnesium dependent, alpha isoform
novel_NIR_4514	chr12	72826400	72830457	+	72807587	72830457	A5SS	ENSMUST00000222790.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021096.12	Ppm1a	chr12	protein_coding	protein phosphatase 1A, magnesium dependent, alpha isoform
novel_NIR_4515	chr12	72963653	72964648	-	72963653	72964482	A5SS	ENSMUST00000044000.12	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000021098.15	4930447C04Rik	chr12	protein_coding	RIKEN cDNA 4930447C04 gene
novel_NIR_4516	chr12	72963653	72964648	-	72963653	72964560	5pMXE	ENSMUST00000131033.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000021098.15	4930447C04Rik	chr12	protein_coding	RIKEN cDNA 4930447C04 gene
novel_NIR_4517	chr12	72963653	72964648	-	72963653	72984441	A5SS	ENSMUST00000130635.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000021098.15	4930447C04Rik	chr12	protein_coding	RIKEN cDNA 4930447C04 gene
novel_NIR_4518	chr12	72963653	72964648	-	72963653	72986097	A5SS	ENSMUST00000136075.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000021098.15	4930447C04Rik	chr12	protein_coding	RIKEN cDNA 4930447C04 gene
novel_NIR_4519	chr12	73327406	73327730	-	73327406	73329386	A5SS	ENSMUST00000220701.2	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	2	0	2	0	y	0.50	2	2	2	2	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000034442.12	Trmt5	chr12	protein_coding	TRM5 tRNA methyltransferase 5
novel_NIR_4520	chr12	73332049	73332153	-	73332049	73332678	A5SS	ENSMUST00000221189.2	novel	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.33	2	4	2	4	y	0.00	0	4	0	4	n	0.17	1	5	1	5	n	ENSMUSG00000034442.12	Trmt5	chr12	protein_coding	TRM5 tRNA methyltransferase 5
novel_NIR_4521	chr12	73332049	73332153	-	73332049	73333458	A5SS	ENSMUST00000116420.4	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.40	2	3	2	3	y	-	-	-	-	-	-	0.17	1	5	1	5	n	ENSMUSG00000034442.12	Trmt5	chr12	protein_coding	TRM5 tRNA methyltransferase 5
novel_NIR_4522	chr12	73365790	73367377	+	73365790	73374519	A3SS	ENSMUST00000058139.14	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000044712.16	Slc38a6	chr12	protein_coding	solute carrier family 38, member 6
novel_NIR_4523	chr12	73365790	73367377	+	73365790	73376754	A3SS	ENSMUST00000140523.8	novel	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.22	2	7	2	7	y	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000044712.16	Slc38a6	chr12	protein_coding	solute carrier family 38, member 6
novel_NIR_4524	chr12	73365790	73383796	+	73365790	73374519	3pMXE	ENSMUST00000058139.14	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000044712.16	Slc38a6	chr12	protein_coding	solute carrier family 38, member 6
novel_NIR_4525	chr12	73365790	73383796	+	73365790;73376832	73376754;73383796	ES	ENSMUST00000140523.8	novel	0.00	0	2.5	0	2;3	n	0.27	2	5.5	2	5;6	y	0.13	1	6.5	1	7;6	n	0.00	0	7.0	0	7;7	n	0.46	3	3.5	3	5;2	y	0.00	0	1.5	0	1;2	n	0.11	1	8.0	1	8;8	n	0.35	3	5.5	3	5;6	y	0.12	1	7.0	1	11;3	n	0.24	2	6.5	2	4;9	y	0.00	0	1.0	0	1;1	n	0.00	0	4.0	0	1;7	n	ENSMUSG00000044712.16	Slc38a6	chr12	protein_coding	solute carrier family 38, member 6
novel_NIR_4526	chr12	73383878	73388182	+	73383878;73384342	73384284;73388182	ES	ENSMUST00000140523.8	novel	0.00	0	10.0	0	7;13	n	0.00	0	7.5	0	10;5	n	0.20	1	4.0	1	3;5	n	0.00	0	5.0	0	5;5	n	0.25	3	9.0	3	4;14	y	-	-	-	-	-	-	0.00	0	8.0	0	7;9	n	0.00	0	9.0	0	7;11	n	0.00	0	5.5	0	4;7	n	0.13	1	6.5	1	7;6	n	0.00	0	7.0	0	3;11	n	0.25	2	6.0	2	8;4	y	ENSMUSG00000044712.16	Slc38a6	chr12	protein_coding	solute carrier family 38, member 6
novel_NIR_4527	chr12	73388534	73391567	+	73388534;73390522	73390443;73391567	ES	ENSMUST00000140523.8	novel	0.00	0	5.5	0	6;5	n	0.10	1	9.0	1	6;12	n	0.00	0	8.5	0	8;9	n	0.00	0	11.0	0	10;12	n	0.00	0	9.5	0	8;11	n	0.00	0	4.0	0	4;4	n	0.00	0	10.5	0	11;10	n	0.00	0	7.5	0	8;7	n	0.11	1	8.0	1	5;11	n	0.20	2	8.0	2	7;9	y	0.15	1	5.5	1	3;8	n	0.00	0	11.5	0	13;10	n	ENSMUSG00000044712.16	Slc38a6	chr12	protein_coding	solute carrier family 38, member 6
novel_NIR_4528	chr12	73388906	73390443	+	73388534	73390443	A5SS	ENSMUST00000140523.8	novel	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.21	3	11	3	11	y	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.07	1	13	1	13	n	ENSMUSG00000044712.16	Slc38a6	chr12	protein_coding	solute carrier family 38, member 6
novel_NIR_4529	chr12	73456002	73456177	-	73443253	73456177	A3SS	ENSMUST00000221180.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000056359.7	D830013O20Rik	chr12	lncRNA	RIKEN cDNA D830013O20 gene
novel_NIR_4530	chr12	73593272	73595843	+	73595345	73595843	5pMXE	ENSMUST00000222490.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000113800.2	2210039B01Rik	chr12	lncRNA	RIKEN cDNA 2210039B01 gene
novel_NIR_4531	chr12	73593378	73595843	+	73595345	73595843	5pMXE	ENSMUST00000222490.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000113800.2	2210039B01Rik	chr12	lncRNA	RIKEN cDNA 2210039B01 gene
novel_NIR_4532	chr12	73595915	73597930	+	73595915;73597015	73596970;73597930	ES	ENSMUST00000222490.2	novel	-	-	-	-	-	-	0.00	0	2.0	0	1;3	n	0.67	1	0.5	1	1;0	n	0.00	0	5.5	0	5;6	n	0.00	0	4.0	0	4;4	n	0.00	0	1.0	0	1;1	n	0.00	0	2.0	0	2;2	n	0.00	0	3.0	0	3;3	n	0.36	2	3.5	2	3;4	y	0.00	0	4.5	0	6;3	n	0.00	0	2.5	0	2;3	n	0.00	0	1.5	0	0;3	n	ENSMUSG00000113800.2	2210039B01Rik	chr12	lncRNA	RIKEN cDNA 2210039B01 gene
novel_NIR_4533	chr12	73890146	73893467	-	73890146	73896421	A5SS	ENSMUST00000221427.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000087700.3	Gm15283	chr12	lncRNA	predicted gene 15283
novel_NIR_4534	chr12	73890146	73893467	-	73890146	73910249	A5SS	ENSMUST00000222217.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000087700.3	Gm15283	chr12	lncRNA	predicted gene 15283
novel_NIR_4535	chr12	73890146	73893540	-	73890146	73896421	A5SS	ENSMUST00000221427.2	novel	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000087700.3	Gm15283	chr12	lncRNA	predicted gene 15283
novel_NIR_4536	chr12	73890146	73893540	-	73890146	73910249	A5SS	ENSMUST00000222217.2	novel	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000087700.3	Gm15283	chr12	lncRNA	predicted gene 15283
novel_NIR_4537	chr12	73896713	73916287	-	73896713	73996398	A5SS	ENSMUST00000221427.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000087700.3	Gm15283	chr12	lncRNA	predicted gene 15283
novel_NIR_4538	chr12	73896713	73916287	-	73910394	73916287	A3SS&ES	ENSMUST00000222217.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000087700.3	Gm15283	chr12	lncRNA	predicted gene 15283
novel_NIR_4539	chr12	73955098	73973328	+	73955098	73973331	A3SS	ENSMUST00000110464.8	novel	0.10	2	18	2	18	n	0.38	5	8	5	8	y	0.33	35	71	35	71	y	0.28	9	23	9	23	y	0.34	16	31	16	31	y	0.17	6	29	6	29	y	0.21	8	31	8	31	y	0.19	6	25	6	25	y	0.14	3	18	3	18	n	0.21	7	26	7	26	y	0.42	5	7	5	7	y	0.35	9	17	9	17	y	ENSMUSG00000021109.14	Hif1a	chr12	protein_coding	hypoxia inducible factor 1, alpha subunit
novel_NIR_4540	chr12	73977304	73996398	-	73896713	73996398	A3SS	ENSMUST00000221427.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000087700.3	Gm15283	chr12	lncRNA	predicted gene 15283
novel_NIR_4541	chr12	74021935	74029407	+	74021935	74029412	A3SS	ENSMUST00000220882.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	ENSMUSG00000021113.6	Snapc1	chr12	protein_coding	small nuclear RNA activating complex, polypeptide 1
novel_NIR_4542	chr12	75562305	75562376	-	75531998	75562376	A3SS	ENSMUST00000220035.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021051.11	Ppp2r5e	chr12	protein_coding	protein phosphatase 2, regulatory subunit B', epsilon
novel_NIR_4543	chr12	76302318	76312307	+	76302318	76326178	A3SS	ENSMUST00000220046.2	novel	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	ENSMUSG00000021048.8	Mthfd1	chr12	protein_coding	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase
novel_NIR_4544	chr12	76317219	76326178	+	76302318	76326178	A5SS	ENSMUST00000220046.2	novel	0.17	1	5	1	5	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.00	0	7	0	7	n	ENSMUSG00000021048.8	Mthfd1	chr12	protein_coding	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase
novel_NIR_4545	chr12	76397047	76416214	-	76397047	76402663	A5SS&ES	ENSMUST00000167011.8	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.33	2	4	2	4	y	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000056459.15	Zbtb25	chr12	protein_coding	zinc finger and BTB domain containing 25
novel_NIR_4546	chr12	76397047	76416214	-	76397047;76402842	76402663;76416214	ES	ENSMUST00000176278.8	novel	0.00	0	1.5	0	3;0	n	0.00	0	2.0	0	4;0	n	0.40	2	3.0	2	4;2	y	0.00	0	6.5	0	10;3	n	0.00	0	3.5	0	4;3	n	0.00	0	2.5	0	4;1	n	0.00	0	5.5	0	9;2	n	0.00	0	1.0	0	2;0	n	0.00	0	3.0	0	6;0	n	0.00	0	2.5	0	4;1	n	0.00	0	2.5	0	2;3	n	0.00	0	2.5	0	5;0	n	ENSMUSG00000056459.15	Zbtb25	chr12	protein_coding	zinc finger and BTB domain containing 25
novel_NIR_4547	chr12	76402842	76403834	-	76402842	76403880	A5SS	ENSMUST00000176102.8	novel	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000056459.15	Zbtb25	chr12	protein_coding	zinc finger and BTB domain containing 25
novel_NIR_4548	chr12	76402842	76403834	-	76402842	76415619	A5SS	ENSMUST00000176509.8	novel	1.00	2	0	2	0	y	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000056459.15	Zbtb25	chr12	protein_coding	zinc finger and BTB domain containing 25
novel_NIR_4549	chr12	76402842	76403834	-	76402842	76416108	A5SS	ENSMUST00000176187.8	novel	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000056459.15	Zbtb25	chr12	protein_coding	zinc finger and BTB domain containing 25
novel_NIR_4550	chr12	76402842	76403834	-	76402842	76416112	A5SS	ENSMUST00000167011.8	novel	0.67	2	1	2	1	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000056459.15	Zbtb25	chr12	protein_coding	zinc finger and BTB domain containing 25
novel_NIR_4551	chr12	76402842	76403834	-	76402842	76416214	A5SS	ENSMUST00000176278.8	novel	1.00	2	0	2	0	y	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000056459.15	Zbtb25	chr12	protein_coding	zinc finger and BTB domain containing 25
novel_NIR_4552	chr12	76594381	76594476	-	76594265	76594476	A3SS	ENSMUST00000219353.2	novel	0.16	3	16	3	16	y	0.00	0	21	0	21	n	0.31	10	22	10	22	y	0.00	0	15	0	15	n	0.00	0	21	0	21	n	0.05	1	18	1	18	n	0.24	4	13	4	13	y	0.00	0	21	0	21	n	0.17	1	5	1	5	n	0.09	1	10	1	10	n	0.27	6	16	6	16	y	0.00	0	11	0	11	n	ENSMUSG00000112388.2	AI463170	chr12	lncRNA	expressed sequence AI463170
novel_NIR_4553	chr12	76613040	76618821	+	76613040	76617861	A3SS&ES	ENSMUST00000075249.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000052609.10	Plekhg3	chr12	protein_coding	pleckstrin homology domain containing, family G (with RhoGef domain) member 3
novel_NIR_4554	chr12	76624050	76624453	+	76624050	76624449	A3SS	ENSMUST00000075249.6	novel	0.02	1	44	1	44	n	0.09	3	32	3	32	n	0.03	1	33	1	33	n	0.00	0	40	0	40	n	0.05	3	56	3	56	n	0.04	1	26	1	26	n	0.06	4	59	4	59	n	0.00	0	42	0	42	n	0.11	4	34	4	34	n	0.07	4	52	4	52	n	0.16	7	38	7	38	y	0.11	7	54	7	54	n	ENSMUSG00000052609.10	Plekhg3	chr12	protein_coding	pleckstrin homology domain containing, family G (with RhoGef domain) member 3
novel_NIR_4555	chr12	76985529	76986188	-	76985529	76986204	A5SS	ENSMUST00000218653.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.60	3	2	3	2	y	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.38	3	5	3	5	y	ENSMUSG00000059436.14	Max	chr12	protein_coding	Max protein
novel_NIR_4556	chr12	76985529	76986200	-	76985529	76986204	A5SS	ENSMUST00000218653.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	ENSMUSG00000059436.14	Max	chr12	protein_coding	Max protein
novel_NIR_4557	chr12	77324229	77378670	+	77324229;77370711	77370619;77378670	ES	ENSMUST00000171770.10	novel	0.00	0	3.5	0	3;4	n	-	-	-	-	-	-	0.00	0	5.5	0	5;6	n	0.00	0	3.0	0	2;4	n	0.00	0	2.5	0	0;5	n	0.67	1	0.5	1	1;0	n	0.29	2	5.0	2	2;8	y	0.00	0	5.0	0	3;7	n	0.00	0	1.0	0	2;0	n	0.00	0	1.5	0	0;3	n	0.00	0	3.0	0	5;1	n	0.00	0	1.5	0	3;0	n	ENSMUSG00000021065.17	Fut8	chr12	protein_coding	fucosyltransferase 8
novel_NIR_4558	chr12	78539084	78540727	+	78539084	78551391	A3SS	ENSMUST00000052472.6	novel	0.00	0	1	0	1	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	0.75	3	1	3	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000047454.13	Gphn	chr12	protein_coding	gephyrin
novel_NIR_4559	chr12	79130470	79132421	-	79130473	79132421	A3SS	ENSMUST00000072154.9	novel	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.31	4	9	4	9	y	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.09	1	10	1	10	n	ENSMUSG00000021120.12	Pigh	chr12	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class H
novel_NIR_4560	chr12	79207344	79211722	-	79208996	79211722	A3SS&ES	ENSMUST00000163031.2	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.60	3	2	3	2	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000021124.14	Vti1b	chr12	protein_coding	vesicle transport through interaction with t-SNAREs 1B
novel_NIR_4561	chr12	7921683	7999906	-	7962608	7999906	3pMXE	ENSMUST00000218264.2	novel	0.11	10	84	10	84	n	0.10	9	77	9	77	n	0.03	1	39	1	39	n	0.06	7	117	7	117	n	0.09	14	135	14	135	n	0.11	5	40	5	40	n	0.03	6	170	6	170	n	0.04	2	52	2	52	n	0.15	19	109	19	109	y	0.05	10	195	10	195	n	0.08	14	160	14	160	n	0.09	13	132	13	132	n	ENSMUSG00000112006.2	Gm48633	chr12	lncRNA	predicted gene, 48633
novel_NIR_4562	chr12	79325304	79325864	-	79325333	79325864	A3SS	ENSMUST00000021547.8	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	24	0	24	n	0.00	0	19	0	19	n	0.00	0	20	0	20	n	0.00	0	12	0	12	n	0.00	0	19	0	19	n	0.00	0	17	0	17	n	0.00	0	8	0	8	n	0.00	0	16	0	16	n	0.25	2	6	2	6	y	0.11	2	17	2	17	n	ENSMUSG00000066440.6	Zfyve26	chr12	protein_coding	zinc finger, FYVE domain containing 26
novel_NIR_4563	chr12	79403360	79704598	+	79374178	79704598	A5SS	ENSMUST00000171210.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000059060.16	Rad51b	chr12	protein_coding	RAD51 paralog B
novel_NIR_4564	chr12	79547228	79704598	+	79374178	79704598	A5SS	ENSMUST00000171210.3	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000059060.16	Rad51b	chr12	protein_coding	RAD51 paralog B
novel_NIR_4565	chr12	79606581	79704598	+	79374178	79704598	A5SS	ENSMUST00000171210.3	novel	1.00	6	0	6	0	y	1.00	11	0	11	0	y	1.00	19	0	19	0	y	1.00	10	0	10	0	y	0.96	23	1	23	1	y	1.00	19	0	19	0	y	1.00	11	0	11	0	y	1.00	25	0	25	0	y	1.00	6	0	6	0	y	1.00	10	0	10	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	ENSMUSG00000059060.16	Rad51b	chr12	protein_coding	RAD51 paralog B
novel_NIR_4566	chr12	79606748	79704598	+	79374178	79704598	A5SS	ENSMUST00000171210.3	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.75	3	1	3	1	y	1.00	1	0	1	0	n	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000059060.16	Rad51b	chr12	protein_coding	RAD51 paralog B
novel_NIR_4567	chr12	7962608;7963131	7963066;7999906	-	7962608	7999906	cassetteExon	ENSMUST00000218264.2	novel	0.16	15.5	84	16;15	84	y	0.18	16.5	77	14;19	77	y	0.20	10.0	39	11;9	39	y	0.15	20.5	117	21;20	117	y	0.15	24.5	135	29;20	135	y	0.02	1.0	40	0;2	40	n	0.10	19.0	170	25;13	170	n	0.21	14.0	52	14;14	52	y	0.16	20.0	109	24;16	109	y	0.12	26.5	195	30;23	195	n	0.14	25.5	160	32;19	160	n	0.08	11.5	132	12;11	132	n	ENSMUSG00000112006.2	Gm48633	chr12	lncRNA	predicted gene, 48633
novel_NIR_4568	chr12	79651500	79704598	+	79374178	79704598	A5SS	ENSMUST00000171210.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000059060.16	Rad51b	chr12	protein_coding	RAD51 paralog B
novel_NIR_4569	chr12	79677702	79704598	+	79374178	79704598	A5SS	ENSMUST00000171210.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000059060.16	Rad51b	chr12	protein_coding	RAD51 paralog B
novel_NIR_4570	chr12	79813760	79813845	+	79704694	79813845	A5SS	ENSMUST00000171210.3	novel	0.35	6	11	6	11	y	0.52	17	16	17	16	y	0.21	8	30	8	30	y	0.64	7	4	7	4	y	0.40	14	21	14	21	y	0.10	3	27	3	27	n	0.40	23	34	23	34	y	0.26	8	23	8	23	y	0.60	6	4	6	4	y	0.57	24	18	24	18	y	0.65	11	6	11	6	y	0.00	0	5	0	5	n	ENSMUSG00000059060.16	Rad51b	chr12	protein_coding	RAD51 paralog B
novel_NIR_4571	chr12	79850042	79860069	+	79850042	79860716	A3SS	ENSMUST00000171210.3	novel	0.00	0	13	0	13	n	0.07	2	25	2	25	n	0.05	1	20	1	20	n	0.00	0	7	0	7	n	0.00	0	28	0	28	n	0.00	0	24	0	24	n	0.00	0	29	0	29	n	0.00	0	27	0	27	n	0.18	2	9	2	9	y	0.06	2	29	2	29	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	ENSMUSG00000059060.16	Rad51b	chr12	protein_coding	RAD51 paralog B
novel_NIR_4572	chr12	79850042	79860684	+	79850042	79860716	A3SS	ENSMUST00000171210.3	novel	0.43	10	13	10	13	y	0.29	10	25	10	25	y	0.33	10	20	10	20	y	0.53	8	7	8	7	y	0.20	7	28	7	28	y	0.08	2	24	2	24	n	0.47	26	29	26	29	y	0.27	10	27	10	27	y	0.10	1	9	1	9	n	0.36	16	29	16	29	y	0.42	8	11	8	11	y	0.50	2	2	2	2	y	ENSMUSG00000059060.16	Rad51b	chr12	protein_coding	RAD51 paralog B
novel_NIR_4573	chr12	80173970	80178588	-	80171900	80178588	A3SS	ENSMUST00000220125.2	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.10	1	9	1	9	n	0.08	1	11	1	11	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000097729.3	2310015A10Rik	chr12	lncRNA	RIKEN cDNA 2310015A10 gene
novel_NIR_4574	chr12	80173970	80178588	-	80173970;80177885	80177787;80178588	ES	ENSMUST00000219349.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	1.00	1	0.0	1	0;0	n	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000097729.3	2310015A10Rik	chr12	lncRNA	RIKEN cDNA 2310015A10 gene
novel_NIR_4575	chr12	80217022	80217460	-	80217022	80218503	A5SS	ENSMUST00000167327.2	novel	-	-	-	-	-	-	0.00	0	6	0	6	n	0.40	2	3	2	3	y	1.00	3	0	3	0	y	0.10	1	9	1	9	n	1.00	1	0	1	0	n	0.25	2	6	2	6	y	0.33	2	4	2	4	y	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.25	1	3	1	3	n	0.50	5	5	5	5	y	ENSMUSG00000015143.16	Actn1	chr12	protein_coding	actinin, alpha 1
novel_NIR_4576	chr12	80256247	80267801	-	80256247	80305441	A5SS	ENSMUST00000220351.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000015143.16	Actn1	chr12	protein_coding	actinin, alpha 1
novel_NIR_4577	chr12	80256247	80267801	-	80256247	80306630	A5SS	ENSMUST00000218874.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000015143.16	Actn1	chr12	protein_coding	actinin, alpha 1
novel_NIR_4578	chr12	8027860	8028216	+	8027860	8029253	A3SS	ENSMUST00000037520.14	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	ENSMUSG00000020609.15	Apob	chr12	protein_coding	apolipoprotein B
novel_NIR_4579	chr12	80483070	80483138	-	80451472	80483138	A3SS	ENSMUST00000218498.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.60	3	2	3	2	y	ENSMUSG00000049106.8	Dcaf5	chr12	protein_coding	DDB1 and CUL4 associated factor 5
novel_NIR_4580	chr12	80531146	80536250	+	80531146	80535059	A3SS&ES	ENSMUST00000219039.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032705.10	Exd2	chr12	protein_coding	exonuclease 3'-5' domain containing 2
novel_NIR_4581	chr12	80531146	80536250	+	80531146	80536176	A3SS	ENSMUST00000038185.10	novel	0.00	0	12	0	12	n	0.22	2	7	2	7	y	0.00	0	8	0	8	n	0.00	0	18	0	18	n	0.00	0	15	0	15	n	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	19	0	19	n	ENSMUSG00000032705.10	Exd2	chr12	protein_coding	exonuclease 3'-5' domain containing 2
novel_NIR_4582	chr12	8065082	8065692	+	8065082	8065873	A3SS	ENSMUST00000171239.2	novel	0.27	65	174	65	174	y	0.20	54	220	54	220	y	0.19	60	255	60	255	y	0.20	56	230	56	230	y	0.22	101	355	101	355	y	0.20	43	168	43	168	y	0.21	93	350	93	350	y	0.29	75	185	75	185	y	0.26	63	180	63	180	y	0.26	112	316	112	316	y	0.11	33	261	33	261	n	0.23	59	197	59	197	y	ENSMUSG00000020609.15	Apob	chr12	protein_coding	apolipoprotein B
novel_NIR_4583	chr12	8065082	8065957	+	8065082	8065873	A3SS	ENSMUST00000171239.2	novel	0.11	22	174	22	174	n	0.18	47	220	47	220	y	0.11	33	255	33	255	n	0.23	69	230	69	230	y	0.17	71	355	71	355	y	0.06	11	168	11	168	n	0.20	86	350	86	350	y	0.22	51	185	51	185	y	0.24	57	180	57	180	y	0.11	39	316	39	316	n	0.20	67	261	67	261	y	0.00	0	197	0	197	n	ENSMUSG00000020609.15	Apob	chr12	protein_coding	apolipoprotein B
novel_NIR_4584	chr12	8065082	8066099	+	8065082	8065873	A3SS	ENSMUST00000171239.2	novel	0.32	82	174	82	174	y	0.00	1	220	1	220	n	0.22	74	255	74	255	y	0.00	0	230	0	230	n	0.00	0	355	0	355	n	0.01	1	168	1	168	n	0.01	2	350	2	350	n	0.00	0	185	0	185	n	0.00	0	180	0	180	n	0.00	1	316	1	316	n	0.16	49	261	49	261	y	0.01	1	197	1	197	n	ENSMUSG00000020609.15	Apob	chr12	protein_coding	apolipoprotein B
novel_NIR_4585	chr12	80691190	80691318	+	80691190	80691380	A3SS	ENSMUST00000218440.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.43	3	4	3	4	y	0.00	0	2	0	2	n	0.88	7	1	7	1	y	0.50	1	1	1	1	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	2	0	2	0	y	0.50	1	1	1	1	n	ENSMUSG00000048833.10	Slc39a9	chr12	protein_coding	solute carrier family 39 (zinc transporter), member 9
novel_NIR_4586	chr12	80691190	80691318	+	80691190	80709244	A3SS	ENSMUST00000219405.2	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.88	7	1	7	1	y	1.00	1	0	1	0	n	0.40	2	3	2	3	y	0.00	0	3	0	3	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000048833.10	Slc39a9	chr12	protein_coding	solute carrier family 39 (zinc transporter), member 9
novel_NIR_4587	chr12	80691190	80691369	+	80691190	80691380	A3SS	ENSMUST00000218440.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000048833.10	Slc39a9	chr12	protein_coding	solute carrier family 39 (zinc transporter), member 9
novel_NIR_4588	chr12	80691190	80691369	+	80691190	80709244	A3SS	ENSMUST00000219405.2	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000048833.10	Slc39a9	chr12	protein_coding	solute carrier family 39 (zinc transporter), member 9
novel_NIR_4589	chr12	80753704	80753946	+	80753203	80753946	A5SS	ENSMUST00000140770.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000066438.7	Plekhd1	chr12	protein_coding	pleckstrin homology domain containing, family D (with coiled-coil domains) member 1
novel_NIR_4590	chr12	80753704	80753946	+	80753704	80754956	A3SS	ENSMUST00000152465.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000066438.7	Plekhd1	chr12	protein_coding	pleckstrin homology domain containing, family D (with coiled-coil domains) member 1
novel_NIR_4591	chr12	80900979	80915201	+	80875017	80915201	A5SS	ENSMUST00000068519.7	novel	0.00	0	27	0	27	n	0.00	0	23	0	23	n	0.07	8	99	8	99	n	0.00	0	27	0	27	n	0.05	4	77	4	77	n	0.21	14	53	14	53	y	0.03	2	59	2	59	n	0.13	9	59	9	59	n	0.00	0	27	0	27	n	0.00	0	27	0	27	n	0.00	0	10	0	10	n	0.03	1	34	1	34	n	ENSMUSG00000021133.10	Susd6	chr12	protein_coding	sushi domain containing 6
novel_NIR_4592	chr12	80900979	80915201	+	80898050	80915201	A5SS	ENSMUST00000220238.2	novel	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.14	8	48	8	48	n	0.00	0	24	0	24	n	0.08	4	48	4	48	n	0.37	14	24	14	24	y	0.06	2	34	2	34	n	0.24	9	28	9	28	y	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.04	1	22	1	22	n	ENSMUSG00000021133.10	Susd6	chr12	protein_coding	sushi domain containing 6
novel_NIR_4593	chr12	80993494	80994080	+	80993494	80993890	A3SS	ENSMUST00000138434.8	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021134.18	Srsf5	chr12	protein_coding	serine and arginine-rich splicing factor 5
novel_NIR_4594	chr12	80995436	80995869	+	80994639	80995869	A5SS	ENSMUST00000094693.11	novel	0.09	22	215	22	215	n	0.14	26	166	26	166	n	0.19	41	180	41	180	y	0.08	21	229	21	229	n	0.07	32	427	32	427	n	0.04	6	145	6	145	n	0.07	34	454	34	454	n	0.12	19	144	19	144	n	0.06	18	306	18	306	n	0.12	56	392	56	392	n	0.00	0	311	0	311	n	0.09	46	455	46	455	n	ENSMUSG00000021134.18	Srsf5	chr12	protein_coding	serine and arginine-rich splicing factor 5
novel_NIR_4595	chr12	81014831	81014939	-	81014831	81015385	A5SS	ENSMUST00000218162.2	novel	0.00	0	74	0	74	n	0.07	4	55	4	55	n	0.00	0	1	0	1	n	0.04	3	74	3	74	n	0.07	5	70	5	70	n	0.40	2	3	2	3	y	0.05	5	86	5	86	n	0.00	0	10	0	10	n	0.00	0	73	0	73	n	0.05	6	106	6	106	n	0.01	1	89	1	89	n	0.04	3	71	3	71	n	ENSMUSG00000021135.9	Slc10a1	chr12	protein_coding	solute carrier family 10 (sodium/bile acid cotransporter family), member 1
novel_NIR_4596	chr12	81406118	81424392	-	81406118	81421192	A5SS&ES	ENSMUST00000166723.8	novel	0.00	0	1	0	1	n	0.12	1	7	1	7	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.60	3	2	3	2	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000091803.8	Cox16	chr12	protein_coding	cytochrome c oxidase assembly protein 16
novel_NIR_4597	chr12	81406118	81432273	-	81406118	81421192	A5SS&ES	ENSMUST00000166723.8	novel	0.00	0	1	0	1	n	0.00	0	7	0	7	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.60	3	2	3	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000091803.8	Cox16	chr12	protein_coding	cytochrome c oxidase assembly protein 16
novel_NIR_4598	chr12	81406118	81495343	-	81406118	81421192	A5SS&ES	ENSMUST00000166723.8	novel	0.67	2	1	2	1	y	0.12	1	7	1	7	n	-	-	-	-	-	-	0.75	3	1	3	1	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	ENSMUSG00000091803.8	Cox16	chr12	protein_coding	cytochrome c oxidase assembly protein 16
novel_NIR_4599	chr12	81406118;81432330	81432273;81521361	-	81406118;81421281	81421192;81521361	MXE	ENSMUST00000166723.8	novel	0.00	0.0	0.5	0;0	1;0	n	0.00	0.0	4.5	0;0	7;2	n	0.33	0.5	1.0	1;0	0;2	n	0.00	0.0	1.0	0;0	1;1	n	0.00	0.0	0.5	0;0	1;0	n	0.50	1.0	1.0	2;0	1;1	n	0.00	0.0	2.5	0;0	3;2	n	0.50	0.5	0.5	1;0	1;0	n	0.71	2.5	1.0	3;2	2;0	y	0.00	0.0	3.0	0;0	2;4	n	0.00	0.0	1.5	0;0	3;0	n	0.00	0.0	1.5	0;0	2;1	n	ENSMUSG00000091803.8	Cox16	chr12	protein_coding	cytochrome c oxidase assembly protein 16
novel_NIR_4600	chr12	81406118;81432994	81432947;81521361	-	81406118;81421281	81421192;81521361	MXE	ENSMUST00000166723.8	novel	0.00	0.0	0.5	0;0	1;0	n	0.18	1.0	4.5	0;2	7;2	n	0.00	0.0	1.0	0;0	0;2	n	0.60	1.5	1.0	0;3	1;1	n	0.75	1.5	0.5	0;3	1;0	n	0.50	1.0	1.0	1;1	1;1	n	0.17	0.5	2.5	0;1	3;2	n	0.00	0.0	0.5	0;0	1;0	n	0.00	0.0	1.0	0;0	2;0	n	0.14	0.5	3.0	0;1	2;4	n	0.00	0.0	1.5	0;0	3;0	n	0.62	2.5	1.5	2;3	2;1	y	ENSMUSG00000091803.8	Cox16	chr12	protein_coding	cytochrome c oxidase assembly protein 16
novel_NIR_4601	chr12	81421281	81424392	-	81421281	81521361	A5SS	ENSMUST00000166723.8	novel	1.00	4	0	4	0	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	ENSMUSG00000091803.8	Cox16	chr12	protein_coding	cytochrome c oxidase assembly protein 16
novel_NIR_4602	chr12	81432994	81521361	-	81421281	81521361	A3SS	ENSMUST00000166723.8	novel	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.75	3	1	3	1	y	1.00	3	0	3	0	y	0.50	1	1	1	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.20	1	4	1	4	n	-	-	-	-	-	-	0.75	3	1	3	1	n	ENSMUSG00000091803.8	Cox16	chr12	protein_coding	cytochrome c oxidase assembly protein 16
novel_NIR_4603	chr12	81432994	81521361	-	81518945	81521361	3pMXE	ENSMUST00000168463.8	novel	0.00	0	31	0	31	n	0.07	2	28	2	28	n	0.00	0	33	0	33	n	0.15	3	17	3	17	y	0.13	3	20	3	20	n	0.08	1	12	1	12	n	0.03	1	31	1	31	n	0.00	0	22	0	22	n	0.00	0	26	0	26	n	0.03	1	35	1	35	n	0.00	0	29	0	29	n	0.09	3	30	3	30	n	ENSMUSG00000091803.8	Cox16	chr12	protein_coding	cytochrome c oxidase assembly protein 16
novel_NIR_4604	chr12	81527776	81579490	-	81527776	81531540	5pMXE	ENSMUST00000171237.8	novel	0.27	3	8	3	8	y	0.20	2	8	2	8	y	0.00	0	5	0	5	n	0.33	3	6	3	6	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.31	5	11	5	11	y	0.18	2	9	2	9	y	0.08	1	11	1	11	n	0.12	2	15	2	15	n	0.30	3	7	3	7	y	0.11	1	8	1	8	n	ENSMUSG00000091803.8	Cox16	chr12	protein_coding	cytochrome c oxidase assembly protein 16
novel_NIR_4605	chr12	81527776	81579490	-	81527776	81531709	5pMXE	ENSMUST00000167819.2	novel	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	ENSMUSG00000091803.8	Cox16	chr12	protein_coding	cytochrome c oxidase assembly protein 16
novel_NIR_4606	chr12	81527776	81579490	-	81527776	81551318	A5SS&ES	ENSMUST00000170958.8	novel	0.25	3	9	3	9	y	0.18	2	9	2	9	y	0.00	0	17	0	17	n	0.18	3	14	3	14	y	0.00	0	23	0	23	n	0.00	0	4	0	4	n	0.15	5	29	5	29	y	0.20	2	8	2	8	y	0.04	1	23	1	23	n	0.13	2	13	2	13	n	0.20	3	12	3	12	y	0.07	1	13	1	13	n	ENSMUSG00000021139.18	Gm20498	chr12	protein_coding	predicted gene 20498
novel_NIR_4607	chr12	81527776	81579490	-	81527776;81551413	81551318;81579490	ES	ENSMUST00000171459.8	novel	0.18	3	13.5	3	9;18	y	0.11	2	16.0	2	9;23	n	0.00	0	23.5	0	17;30	n	0.12	3	21.0	3	14;28	n	0.00	0	29.5	0	23;36	n	0.00	0	10.0	0	4;16	n	0.15	5	29.0	5	29;29	y	0.14	2	12.5	2	8;17	n	0.04	1	24.0	1	23;25	n	0.07	2	25.0	2	13;37	n	0.15	3	17.5	3	12;23	y	0.04	1	26.0	1	13;39	n	ENSMUSG00000021139.18	Gm20498	chr12	protein_coding	predicted gene 20498
novel_NIR_4608	chr12	81941965	81959439	+	81941965;81953328	81953223;81959439	ES	ENSMUST00000221721.2	novel	0.00	0	8.5	0	11;6	n	0.00	0	1.5	0	0;3	n	0.16	4	21.5	4	21;22	y	0.00	0	10.5	0	15;6	n	0.00	0	18.0	0	13;23	n	0.27	3	8.0	3	10;6	y	0.00	0	10.0	0	10;10	n	0.00	0	20.5	0	25;16	n	0.00	0	8.0	0	6;10	n	0.04	1	22.5	1	27;18	n	0.00	0	6.5	0	9;4	n	0.00	0	10.5	0	12;9	n	ENSMUSG00000021140.10	Pcnx	chr12	protein_coding	pecanex homolog
novel_NIR_4609	chr12	82217184	82281237	+	82216850	82281237	A5SS	ENSMUST00000220550.2	novel	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.25	3	9	3	9	y	0.10	1	9	1	9	n	0.08	1	12	1	12	n	0.00	0	18	0	18	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.40	2	3	2	3	y	0.00	0	14	0	14	n	0.20	1	4	1	4	n	0.00	0	6	0	6	n	ENSMUSG00000042700.17	Sipa1l1	chr12	protein_coding	signal-induced proliferation-associated 1 like 1
novel_NIR_4610	chr12	82333474	82387436	+	82358183	82387436	A5SS&ES	ENSMUST00000166429.9	novel	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	24	0	24	n	0.00	0	15	0	15	n	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.00	0	21	0	21	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	23	0	23	n	0.00	0	8	0	8	n	0.19	3	13	3	13	y	ENSMUSG00000042700.17	Sipa1l1	chr12	protein_coding	signal-induced proliferation-associated 1 like 1
novel_NIR_4611	chr12	82493705	82496081	+	82493705	82496084	A3SS	ENSMUST00000166429.9	novel	0.08	4	48	4	48	n	0.00	0	22	0	22	n	0.05	2	38	2	38	n	0.07	2	27	2	27	n	0.00	0	29	0	29	n	0.12	3	21	3	21	n	0.00	0	35	0	35	n	0.17	2	10	2	10	y	0.00	0	13	0	13	n	0.16	7	37	7	37	y	0.32	7	15	7	15	y	0.08	2	23	2	23	n	ENSMUSG00000042700.17	Sipa1l1	chr12	protein_coding	signal-induced proliferation-associated 1 like 1
novel_NIR_4612	chr12	8266704	8270600	+	8258192	8270600	A5SS	ENSMUST00000037383.13	novel	0.00	0	17	0	17	n	0.00	0	12	0	12	n	0.14	4	24	4	24	n	0.10	2	18	2	18	n	0.11	2	16	2	16	n	0.00	0	7	0	7	n	0.04	1	25	1	25	n	0.00	0	8	0	8	n	0.25	4	12	4	12	y	0.17	4	20	4	20	y	0.00	0	9	0	9	n	0.04	1	27	1	27	n	ENSMUSG00000037669.16	Ldah	chr12	protein_coding	lipid droplet associated hydrolase
novel_NIR_4613	chr12	8266704	8270600	+	8258382	8270600	A5SS	ENSMUST00000220274.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.57	4	3	4	3	y	0.40	2	3	2	3	y	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.80	4	1	4	1	y	1.00	4	0	4	0	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	ENSMUSG00000037669.16	Ldah	chr12	protein_coding	lipid droplet associated hydrolase
novel_NIR_4614	chr12	8270755	8277229	+	8270755	8288443	A3SS	ENSMUST00000217999.2	novel	0.00	0	16	0	16	n	0.00	0	2	0	2	n	0.25	3	9	3	9	y	0.00	0	9	0	9	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	ENSMUSG00000037669.16	Ldah	chr12	protein_coding	lipid droplet associated hydrolase
novel_NIR_4615	chr12	8270755	8277229	+	8270755	8318364	A3SS	ENSMUST00000218305.2	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.43	3	4	3	4	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	ENSMUSG00000037669.16	Ldah	chr12	protein_coding	lipid droplet associated hydrolase
novel_NIR_4616	chr12	8325890	8331710	+	8325890	8331325	A3SS	ENSMUST00000219058.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000037669.16	Ldah	chr12	protein_coding	lipid droplet associated hydrolase
novel_NIR_4617	chr12	8325890	8334407	+	8325890	8331325	3pMXE	ENSMUST00000219058.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000037669.16	Ldah	chr12	protein_coding	lipid droplet associated hydrolase
novel_NIR_4618	chr12	83307657	83315107	-	83307657	83319113	A5SS	ENSMUST00000140327.8	novel	-	-	-	-	-	-	0.50	2	2	2	2	y	0.67	2	1	2	1	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	ENSMUSG00000021221.16	Dpf3	chr12	protein_coding	D4, zinc and double PHD fingers, family 3
novel_NIR_4619	chr12	83576908	83577390	+	83576908	83577598	A3SS	ENSMUST00000021645.9	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	13	0	13	n	0.50	1	1	1	1	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	ENSMUSG00000021222.10	Dcaf4	chr12	protein_coding	DDB1 and CUL4 associated factor 4
novel_NIR_4620	chr12	83584240	83584487	+	83582753	83584487	A5SS	ENSMUST00000021645.9	novel	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	22	0	22	n	0.00	0	2	0	2	n	0.60	3	2	3	2	y	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000021222.10	Dcaf4	chr12	protein_coding	DDB1 and CUL4 associated factor 4
novel_NIR_4621	chr12	83642092	83643771	-	83642096	83643771	A3SS	ENSMUST00000048319.6	novel	0.16	12	63	12	63	y	0.08	2	23	2	23	n	0.15	8	47	8	47	y	0.15	13	75	13	75	y	0.17	19	92	19	92	y	0.16	8	41	8	41	y	0.14	11	65	11	65	n	0.09	5	48	5	48	n	0.17	9	43	9	43	y	0.12	8	59	8	59	n	0.18	10	46	10	46	y	0.14	10	64	10	64	n	ENSMUSG00000042628.9	Zfyve1	chr12	protein_coding	zinc finger, FYVE domain containing 1
novel_NIR_4622	chr12	83642092	83643771	-	83643378	83643771	A3SS&ES	ENSMUST00000221919.2	novel	1.00	12	0	12	0	y	1.00	2	0	2	0	y	1.00	8	0	8	0	y	1.00	13	0	13	0	y	0.95	19	1	19	1	y	1.00	8	0	8	0	y	1.00	11	0	11	0	y	1.00	5	0	5	0	y	1.00	9	0	9	0	y	1.00	8	0	8	0	y	1.00	10	0	10	0	y	1.00	10	0	10	0	y	ENSMUSG00000042628.9	Zfyve1	chr12	protein_coding	zinc finger, FYVE domain containing 1
novel_NIR_4623	chr12	83679191	83682176	+	83679191	83685902	A3SS	ENSMUST00000183154.8	novel	0.14	1	6	1	6	n	0.40	2	3	2	3	n	0.38	5	8	5	8	n	0.19	3	13	3	13	y	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.36	4	7	4	7	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000010608.16	Rbm25	chr12	protein_coding	RNA binding motif protein 25
novel_NIR_4624	chr12	83679191	83682176	+	83679191	83689176	A3SS	ENSMUST00000182618.8	novel	1.00	1	0	1	0	n	0.67	2	1	2	1	y	0.45	5	6	5	6	y	0.50	3	3	3	3	y	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.80	4	1	4	1	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000010608.16	Rbm25	chr12	protein_coding	RNA binding motif protein 25
novel_NIR_4625	chr12	83679191	83682176	+	83679191	83689403	A3SS	ENSMUST00000048155.16	novel	0.06	1	15	1	15	n	0.22	2	7	2	7	y	0.18	5	23	5	23	y	0.14	3	18	3	18	n	0.00	0	27	0	27	n	0.06	1	15	1	15	n	0.00	0	22	0	22	n	0.00	0	17	0	17	n	0.00	0	14	0	14	n	0.15	4	22	4	22	y	0.00	0	11	0	11	n	0.00	0	16	0	16	n	ENSMUSG00000010608.16	Rbm25	chr12	protein_coding	RNA binding motif protein 25
novel_NIR_4626	chr12	83679191;83682255	83682176;83685902	+	83679191	83685902	cassetteExon	ENSMUST00000183154.8	novel	0.14	1.0	6	1;1	6	n	0.45	2.5	3	2;3	3	y	0.27	3.0	8	5;1	8	n	0.10	1.5	13	3;0	13	n	0.00	0.0	3	0;0	3	n	0.33	1.0	2	1;1	2	n	0.00	0.0	6	0;0	6	n	0.33	0.5	1	0;1	1	n	0.00	0.0	7	0;0	7	n	0.22	2.0	7	4;0	7	n	0.00	0.0	1	0;0	1	n	-	-	-	-	-	-	ENSMUSG00000010608.16	Rbm25	chr12	protein_coding	RNA binding motif protein 25
novel_NIR_4627	chr12	83682255	83685902	+	83678396	83685902	A5SS	ENSMUST00000182004.8	novel	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000010608.16	Rbm25	chr12	protein_coding	RNA binding motif protein 25
novel_NIR_4628	chr12	83682577	83685902	+	83678396	83685902	A5SS	ENSMUST00000182004.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000010608.16	Rbm25	chr12	protein_coding	RNA binding motif protein 25
novel_NIR_4629	chr12	83682577	83685902	+	83679191	83685902	A5SS	ENSMUST00000183154.8	novel	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.14	1	6	1	6	n	0.50	1	1	1	1	n	0.22	2	7	2	7	y	0.00	0	7	0	7	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000010608.16	Rbm25	chr12	protein_coding	RNA binding motif protein 25
novel_NIR_4630	chr12	83707452	83707981	+	83707452	83710753	A3SS	ENSMUST00000181983.8	novel	0.12	7	52	7	52	n	0.18	7	31	7	31	y	0.01	1	84	1	84	n	0.04	3	67	3	67	n	0.10	6	55	6	55	n	0.07	2	25	2	25	n	0.07	3	42	3	42	n	0.09	4	39	4	39	n	0.02	1	56	1	56	n	0.03	2	73	2	73	n	0.07	3	37	3	37	n	0.11	9	70	9	70	n	ENSMUSG00000010608.16	Rbm25	chr12	protein_coding	RNA binding motif protein 25
novel_NIR_4631	chr12	83708042	83710753	+	83710006	83710753	5pMXE	ENSMUST00000183282.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000010608.16	Rbm25	chr12	protein_coding	RNA binding motif protein 25
novel_NIR_4632	chr12	83735475	83746129	+	83735067	83746129	A5SS	ENSMUST00000041806.13	novel	0.05	1	21	1	21	n	0.18	3	14	3	14	y	0.02	1	61	1	61	n	0.02	1	59	1	59	n	0.02	1	48	1	48	n	0.06	2	31	2	31	n	0.02	1	49	1	49	n	0.02	1	50	1	50	n	0.00	0	22	0	22	n	0.00	0	39	0	39	n	0.00	0	39	0	39	n	0.10	4	36	4	36	n	ENSMUSG00000019969.15	Psen1	chr12	protein_coding	presenilin 1
novel_NIR_4633	chr12	83735475	83746129	+	83735707	83746129	A5SS	ENSMUST00000101225.2	novel	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000019969.15	Psen1	chr12	protein_coding	presenilin 1
novel_NIR_4634	chr12	83866170	83872033	-	83858134	83872033	A3SS	ENSMUST00000085215.11	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.18	2	9	2	9	y	0.00	0	6	0	6	n	0.00	0	6	0	6	n	ENSMUSG00000021224.16	Numb	chr12	protein_coding	NUMB endocytic adaptor protein
novel_NIR_4635	chr12	83923586	83942205	-	83923586	83968414	A5SS	ENSMUST00000222439.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	5	0	5	n	ENSMUSG00000021224.16	Numb	chr12	protein_coding	NUMB endocytic adaptor protein
novel_NIR_4636	chr12	83923586	83963650	-	83923586	83968414	A5SS	ENSMUST00000222439.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.75	3	1	3	1	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000021224.16	Numb	chr12	protein_coding	NUMB endocytic adaptor protein
novel_NIR_4637	chr12	83923586	83963650	-	83923586	83968592	A5SS	ENSMUST00000117217.8	novel	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	19	0	19	n	0.00	0	20	0	20	n	0.00	0	20	0	20	n	0.00	0	8	0	8	n	0.00	0	25	0	25	n	0.19	3	13	3	13	y	0.00	0	17	0	17	n	0.00	0	25	0	25	n	0.00	0	12	0	12	n	0.00	0	20	0	20	n	ENSMUSG00000021224.16	Numb	chr12	protein_coding	NUMB endocytic adaptor protein
novel_NIR_4638	chr12	84063736	84063855	+	84061355	84063855	A5SS	ENSMUST00000220901.2	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.00	0	5	0	5	n	ENSMUSG00000072949.7	Acot1	chr12	protein_coding	acyl-CoA thioesterase 1
novel_NIR_4639	chr12	84085741	84087413	+	84085741	84103683	A3SS	ENSMUST00000221229.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000113475.2	Gm49366	chr12	protein_coding	predicted gene, 49366
novel_NIR_4640	chr12	84088791	84089965	+	84089610	84089965	5pMXE	ENSMUST00000221860.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000052392.6	Acot4	chr12	protein_coding	acyl-CoA thioesterase 4
novel_NIR_4641	chr12	84261966	84265549	-	84221197	84265549	A3SS	ENSMUST00000046266.13	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	ENSMUSG00000042507.16	Mideas	chr12	protein_coding	mitotic deacetylase associated SANT domain protein
novel_NIR_4642	chr12	84261966	84265549	-	84261966	84262763	5pMXE	ENSMUST00000220851.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000113094.2	Gm47447	chr12	lncRNA	predicted gene, 47447
novel_NIR_4643	chr12	84332209	84339058	+	84332307	84339058	A5SS	ENSMUST00000146377.8	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	ENSMUSG00000072946.13	Ptgr2	chr12	protein_coding	prostaglandin reductase 2
novel_NIR_4644	chr12	84332264	84339058	+	84332307	84339058	A5SS	ENSMUST00000146377.8	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.33	2	4	2	4	y	0.00	0	5	0	5	n	0.22	2	7	2	7	y	ENSMUSG00000072946.13	Ptgr2	chr12	protein_coding	prostaglandin reductase 2
novel_NIR_4645	chr12	84355206	84360711	+	84355206	84355949	3pMXE	ENSMUST00000147363.8	novel	1.00	1	0	1	0	n	0.00	0	5	0	5	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.75	3	1	3	1	y	1.00	1	0	1	0	n	0.00	0	3	0	3	n	ENSMUSG00000072946.13	Ptgr2	chr12	protein_coding	prostaglandin reductase 2
novel_NIR_4646	chr12	84357732	84368586	+	84363983	84368586	5pMXE	ENSMUST00000222258.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.67	2	1	2	1	y	ENSMUSG00000042472.12	Zfp410	chr12	protein_coding	zinc finger protein 410
novel_NIR_4647	chr12	84369793	84372380	+	84369793	84372377	A3SS	ENSMUST00000222606.2	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.25	2	6	2	6	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000042472.12	Zfp410	chr12	protein_coding	zinc finger protein 410
novel_NIR_4648	chr12	84374244	84378409	+	84374244	84384390	A3SS	ENSMUST00000222471.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000042472.12	Zfp410	chr12	protein_coding	zinc finger protein 410
novel_NIR_4649	chr12	84443732	84443834	-	84443732	84447604	A5SS	ENSMUST00000117286.2	novel	0.00	0	7	0	7	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.10	1	9	1	9	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.29	2	5	2	5	y	0.10	1	9	1	9	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	ENSMUSG00000021236.17	Entpd5	chr12	protein_coding	ectonucleoside triphosphate diphosphohydrolase 5
novel_NIR_4650	chr12	84443732	84443834	-	84443732	84452180	A5SS	ENSMUST00000072061.12	novel	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.09	1	10	1	10	n	0.11	1	8	1	8	n	0.00	0	11	0	11	n	-	-	-	-	-	-	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.29	2	5	2	5	y	0.07	1	13	1	13	n	0.00	0	2	0	2	n	0.00	0	12	0	12	n	ENSMUSG00000021236.17	Entpd5	chr12	protein_coding	ectonucleoside triphosphate diphosphohydrolase 5
novel_NIR_4651	chr12	84443732	84447521	-	84443732	84447604	A5SS	ENSMUST00000117286.2	novel	0.00	0	7	0	7	n	0.60	3	2	3	2	y	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.22	2	7	2	7	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	ENSMUSG00000021236.17	Entpd5	chr12	protein_coding	ectonucleoside triphosphate diphosphohydrolase 5
novel_NIR_4652	chr12	84443732	84447521	-	84443732	84452180	A5SS	ENSMUST00000072061.12	novel	0.00	0	7	0	7	n	0.50	3	3	3	3	y	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	-	-	-	-	-	-	0.15	2	11	2	11	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.00	0	2	0	2	n	0.00	0	12	0	12	n	ENSMUSG00000021236.17	Entpd5	chr12	protein_coding	ectonucleoside triphosphate diphosphohydrolase 5
novel_NIR_4653	chr12	84446186	84447521	-	84446186	84447604	A5SS	ENSMUST00000122194.8	novel	0.17	11	55	11	55	y	0.08	2	22	2	22	n	0.04	1	23	1	23	n	0.12	11	77	11	77	n	0.05	5	94	5	94	n	0.00	0	22	0	22	n	0.10	9	77	9	77	n	0.28	8	21	8	21	y	0.06	4	61	4	61	n	0.06	9	141	9	141	n	0.15	14	77	14	77	y	0.09	8	77	8	77	n	ENSMUSG00000021236.17	Entpd5	chr12	protein_coding	ectonucleoside triphosphate diphosphohydrolase 5
novel_NIR_4654	chr12	84446186	84447521	-	84446186	84452180	A5SS	ENSMUST00000021662.12	novel	0.29	11	27	11	27	y	0.06	2	31	2	31	n	0.03	1	28	1	28	n	0.18	11	51	11	51	y	0.07	5	68	5	68	n	0.00	0	20	0	20	n	0.13	9	58	9	58	n	0.32	8	17	8	17	y	0.11	4	33	4	33	n	0.12	9	68	9	68	n	0.27	14	37	14	37	y	0.16	8	43	8	43	y	ENSMUSG00000021236.17	Entpd5	chr12	protein_coding	ectonucleoside triphosphate diphosphohydrolase 5
novel_NIR_4655	chr12	84452249	84454490	-	84452249	84455744	A5SS	ENSMUST00000110272.9	novel	0.15	2	11	2	11	y	0.00	0	8	0	8	n	0.00	0	19	0	19	n	0.00	0	22	0	22	n	0.04	1	26	1	26	n	0.08	1	12	1	12	n	0.05	1	18	1	18	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.00	0	26	0	26	n	0.00	0	17	0	17	n	0.00	0	19	0	19	n	ENSMUSG00000021236.17	Entpd5	chr12	protein_coding	ectonucleoside triphosphate diphosphohydrolase 5
novel_NIR_4656	chr12	84452249	84454969	-	84452249	84455744	A5SS	ENSMUST00000110272.9	novel	0.00	0	11	0	11	n	0.20	2	8	2	8	y	0.00	0	19	0	19	n	0.12	3	22	3	22	n	0.04	1	26	1	26	n	0.00	0	12	0	12	n	0.00	0	18	0	18	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.04	1	26	1	26	n	0.06	1	17	1	17	n	0.00	0	19	0	19	n	ENSMUSG00000021236.17	Entpd5	chr12	protein_coding	ectonucleoside triphosphate diphosphohydrolase 5
novel_NIR_4657	chr12	84458043	84460038	+	84458039	84460038	A5SS	ENSMUST00000081828.13	novel	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000057265.14	Bbof1	chr12	protein_coding	basal body orientation factor 1
novel_NIR_4658	chr12	84490562	84492248	-	84490562	84494905	A5SS	ENSMUST00000222641.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021238.12	Aldh6a1	chr12	protein_coding	aldehyde dehydrogenase family 6, subfamily A1
novel_NIR_4659	chr12	84509226	84513920	+	84509226	84576464	A3SS	ENSMUST00000137170.3	novel	0.00	0	23	0	23	n	0.00	0	15	0	15	n	0.00	0	15	0	15	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.00	0	23	0	23	n	0.00	0	23	0	23	n	0.00	0	13	0	13	n	0.00	0	17	0	17	n	0.00	0	22	0	22	n	0.23	3	10	3	10	y	0.00	0	20	0	20	n	ENSMUSG00000085793.3	Lin52	chr12	protein_coding	lin-52 homolog (C. elegans)
novel_NIR_4660	chr12	84509226	84513920	+	84509226	84592679	A3SS	ENSMUST00000221033.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000085793.3	Lin52	chr12	protein_coding	lin-52 homolog (C. elegans)
novel_NIR_4661	chr12	84509226	84538748	+	84509226	84592679	A3SS	ENSMUST00000221033.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000085793.3	Lin52	chr12	protein_coding	lin-52 homolog (C. elegans)
novel_NIR_4662	chr12	84577218	84584489	+	84577218	84585381	A3SS	ENSMUST00000222741.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000085793.3	Lin52	chr12	protein_coding	lin-52 homolog (C. elegans)
novel_NIR_4663	chr12	84584618	84585381	+	84577218	84585381	A5SS	ENSMUST00000222741.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000085793.3	Lin52	chr12	protein_coding	lin-52 homolog (C. elegans)
novel_NIR_4664	chr12	84585453	84592679	+	84509226	84592679	A5SS	ENSMUST00000221033.2	novel	0.67	4	2	4	2	y	1.00	1	0	1	0	n	0.75	3	1	3	1	y	1.00	4	0	4	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000085793.3	Lin52	chr12	protein_coding	lin-52 homolog (C. elegans)
novel_NIR_4665	chr12	84659219	84659554	-	84659219	84660679	A5SS	ENSMUST00000222889.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000021240.7	Abcd4	chr12	protein_coding	ATP-binding cassette, sub-family D (ALD), member 4
novel_NIR_4666	chr12	84659219	84659554	-	84659224	84659554	A3SS	ENSMUST00000223107.2	novel	0.00	0	11	0	11	n	0.12	1	7	1	7	n	0.00	0	4	0	4	n	0.08	1	11	1	11	n	0.08	2	22	2	22	n	0.11	1	8	1	8	n	0.17	4	19	4	19	y	0.08	1	11	1	11	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.00	0	11	0	11	n	0.05	1	19	1	19	n	ENSMUSG00000021240.7	Abcd4	chr12	protein_coding	ATP-binding cassette, sub-family D (ALD), member 4
novel_NIR_4667	chr12	84659219	84659554	-	84659357	84659554	A3SS	ENSMUST00000222581.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000021240.7	Abcd4	chr12	protein_coding	ATP-binding cassette, sub-family D (ALD), member 4
novel_NIR_4668	chr12	84981897	84988535	-	84981897	84988505	A5SS	ENSMUST00000163372.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000042350.14	Arel1	chr12	protein_coding	apoptosis resistant E3 ubiquitin protein ligase 1
novel_NIR_4669	chr12	84998155	85012663	-	84998155	85017472	A5SS	ENSMUST00000167448.8	novel	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.10	1	9	1	9	n	0.08	1	11	1	11	n	0.07	1	13	1	13	n	0.10	1	9	1	9	n	0.00	0	4	0	4	n	0.17	2	10	2	10	y	-	-	-	-	-	-	0.00	0	6	0	6	n	ENSMUSG00000042350.14	Arel1	chr12	protein_coding	apoptosis resistant E3 ubiquitin protein ligase 1
novel_NIR_4670	chr12	84998155	85012663	-	84998155;84999190	84998965;85012663	ES	ENSMUST00000168713.2	novel	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	0.00	0	1.0	0	2;0	n	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	1.00	1	0.0	1	0;0	n	0.33	1	2.0	1	2;2	n	0.50	1	1.0	1	0;2	n	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	0.00	0	1.0	0	2;0	n	ENSMUSG00000042350.14	Arel1	chr12	protein_coding	apoptosis resistant E3 ubiquitin protein ligase 1
novel_NIR_4671	chr12	84998155	85016376	-	84998155	85017472	A5SS	ENSMUST00000167448.8	novel	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.18	2	9	2	9	y	0.00	0	4	0	4	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.00	0	6	0	6	n	ENSMUSG00000042350.14	Arel1	chr12	protein_coding	apoptosis resistant E3 ubiquitin protein ligase 1
novel_NIR_4672	chr12	85012802	85017472	-	84990166	85017472	A3SS	ENSMUST00000165886.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000042350.14	Arel1	chr12	protein_coding	apoptosis resistant E3 ubiquitin protein ligase 1
novel_NIR_4673	chr12	85012802	85017472	-	84998155	85017472	A3SS	ENSMUST00000167448.8	novel	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.30	3	7	3	7	y	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.14	1	6	1	6	n	ENSMUSG00000042350.14	Arel1	chr12	protein_coding	apoptosis resistant E3 ubiquitin protein ligase 1
novel_NIR_4674	chr12	85155735	85157458	-	85153740	85157458	A3SS	ENSMUST00000221003.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.43	3	4	3	4	y	0.25	1	3	1	3	n	0.00	0	3	0	3	n	ENSMUSG00000042320.18	Prox2	chr12	protein_coding	prospero homeobox 2
novel_NIR_4675	chr12	85162093	85165133	+	85157733	85165133	A5SS	ENSMUST00000221842.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000004789.11	Dlst	chr12	protein_coding	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)
novel_NIR_4676	chr12	85266675	85266871	+	85266707	85266871	A5SS	ENSMUST00000140900.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000004788.12	Eif2b2	chr12	protein_coding	eukaryotic translation initiation factor 2B, subunit 2 beta
novel_NIR_4677	chr12	85316248	85317248	-	85316248	85317313	A5SS	ENSMUST00000019378.8	novel	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.00	0	8	0	8	n	0.50	3	3	3	3	y	0.40	4	6	4	6	y	0.25	1	3	1	3	n	0.12	1	7	1	7	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.50	2	2	2	2	y	0.50	3	3	3	3	y	ENSMUSG00000021245.16	Mlh3	chr12	protein_coding	mutL homolog 3
novel_NIR_4678	chr12	85316248	85317248	-	85316248	85317339	A5SS	ENSMUST00000166821.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	ENSMUSG00000021245.16	Mlh3	chr12	protein_coding	mutL homolog 3
novel_NIR_4679	chr12	85326856	85327086	-	85326856	85334952	A5SS	ENSMUST00000121930.2	novel	0.00	0	7	0	7	n	0.33	3	6	3	6	y	-	-	-	-	-	-	0.08	1	12	1	12	n	0.00	0	13	0	13	n	0.00	0	1	0	1	n	0.00	0	21	0	21	n	0.00	0	2	0	2	n	0.00	0	20	0	20	n	0.00	0	20	0	20	n	0.00	0	16	0	16	n	0.00	0	2	0	2	n	ENSMUSG00000008822.16	Acyp1	chr12	protein_coding	acylphosphatase 1, erythrocyte (common) type
novel_NIR_4680	chr12	85330164	85334952	-	85326856	85334952	A3SS	ENSMUST00000121930.2	novel	0.00	0	7	0	7	n	0.25	2	6	2	6	y	-	-	-	-	-	-	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	1	0	1	n	0.00	0	21	0	21	n	0.00	0	2	0	2	n	0.00	0	20	0	20	n	0.00	0	20	0	20	n	0.00	0	16	0	16	n	0.00	0	2	0	2	n	ENSMUSG00000008822.16	Acyp1	chr12	protein_coding	acylphosphatase 1, erythrocyte (common) type
novel_NIR_4681	chr12	85863208	85866178	-	85863208	85871245	A5SS	ENSMUST00000131681.2	novel	1.00	6	0	6	0	y	1.00	3	0	3	0	y	1.00	10	0	10	0	n	-	-	-	-	-	-	1.00	6	0	6	0	n	1.00	2	0	2	0	y	1.00	15	0	15	0	y	1.00	2	0	2	0	n	1.00	4	0	4	0	y	1.00	7	0	7	0	y	1.00	3	0	3	0	y	0.75	3	1	3	1	n	ENSMUSG00000021252.12	Erg28	chr12	protein_coding	ergosterol biosynthesis 28
novel_NIR_4682	chr12	85863208	85866182	-	85863208	85871245	A5SS	ENSMUST00000131681.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000021252.12	Erg28	chr12	protein_coding	ergosterol biosynthesis 28
novel_NIR_4683	chr12	85869018	85871245	-	85863208	85871245	A3SS	ENSMUST00000131681.2	novel	-	-	-	-	-	-	1.00	18	0	18	0	y	-	-	-	-	-	-	1.00	25	0	25	0	y	1.00	36	0	36	0	y	1.00	25	0	25	0	y	1.00	32	0	32	0	y	1.00	16	0	16	0	y	1.00	26	0	26	0	y	1.00	46	0	46	0	y	1.00	23	0	23	0	y	0.97	35	1	35	1	y	ENSMUSG00000021252.12	Erg28	chr12	protein_coding	ergosterol biosynthesis 28
novel_NIR_4684	chr12	85869018	85871245	-	85870208	85871245	A3SS&ES	ENSMUST00000142331.2	novel	0.00	0	7	0	7	n	0.90	18	2	18	2	y	0.00	0	3	0	3	n	0.93	25	2	25	2	y	0.84	36	7	36	7	y	0.96	25	1	25	1	y	0.89	32	4	32	4	y	0.67	16	8	16	8	y	0.90	26	3	26	3	y	0.94	46	3	46	3	y	0.88	23	3	23	3	y	0.97	35	1	35	1	y	ENSMUSG00000021252.12	Erg28	chr12	protein_coding	ergosterol biosynthesis 28
novel_NIR_4685	chr12	85869022	85870123	-	85869022	85870073	A5SS	ENSMUST00000142331.2	novel	0.86	6	1	6	1	y	1.00	2	0	2	0	y	0.20	1	4	1	4	n	0.67	4	2	4	2	y	0.67	4	2	4	2	y	0.33	1	2	1	2	n	0.88	7	1	7	1	y	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.75	3	1	3	1	y	-	-	-	-	-	-	ENSMUSG00000021252.12	Erg28	chr12	protein_coding	ergosterol biosynthesis 28
novel_NIR_4686	chr12	85946258	85946685	+	85946258	85955567	A3SS	ENSMUST00000040179.14	novel	0.00	0	12	0	12	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	4	0	4	n	0.15	2	11	2	11	y	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.00	0	25	0	25	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	ENSMUSG00000012609.20	Ttll5	chr12	protein_coding	tubulin tyrosine ligase-like family, member 5
novel_NIR_4687	chr12	86059636	86067252	+	86059636	86061541	A3SS&ES	ENSMUST00000177168.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000012609.20	Ttll5	chr12	protein_coding	tubulin tyrosine ligase-like family, member 5
novel_NIR_4688	chr12	86059636	86067252	+	86059636	86062661	3pMXE	ENSMUST00000176695.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000012609.20	Ttll5	chr12	protein_coding	tubulin tyrosine ligase-like family, member 5
novel_NIR_4689	chr12	86059636	86067252	+	86059636	86099917	A3SS	ENSMUST00000177525.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000012609.20	Ttll5	chr12	protein_coding	tubulin tyrosine ligase-like family, member 5
novel_NIR_4690	chr12	86305403	86307351	+	86303706	86307351	A5SS	ENSMUST00000221368.2	novel	0.17	2	10	2	10	y	0.00	0	8	0	8	n	0.00	0	19	0	19	n	0.00	0	9	0	9	n	0.00	0	19	0	19	n	0.00	0	17	0	17	n	0.00	0	17	0	17	n	0.00	0	24	0	24	n	0.00	0	14	0	14	n	0.00	0	26	0	26	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	ENSMUSG00000021254.10	Gpatch2l	chr12	protein_coding	G patch domain containing 2 like
novel_NIR_4691	chr12	86308469	86335574	+	86308469	86309004	3pMXE	ENSMUST00000222299.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021254.10	Gpatch2l	chr12	protein_coding	G patch domain containing 2 like
novel_NIR_4692	chr12	86312023;86314068	86314014;86315750	+	86312023;86313957	86313918;86315750	MXE	ENSMUST00000221368.2	novel	0.19	2.0	8.5	3;1	7;10	n	0.00	0.0	7.5	0;0	6;9	n	0.03	0.5	18.5	1;0	21;16	n	0.04	0.5	13.0	1;0	11;15	n	0.18	3.5	15.5	2;5	12;19	y	0.00	0.0	16.5	0;0	18;15	n	0.00	0.0	18.0	0;0	18;18	n	0.03	0.5	16.5	0;1	16;17	n	0.00	0.0	7.5	0;0	8;7	n	0.23	4.0	13.5	4;4	11;16	y	0.04	0.5	11.5	0;1	12;11	n	0.00	0.0	15.5	0;0	15;16	n	ENSMUSG00000021254.10	Gpatch2l	chr12	protein_coding	G patch domain containing 2 like
novel_NIR_4693	chr12	87194282	87204667	+	87194282;87202343	87202247;87204667	ES	ENSMUST00000222885.2	novel	0.00	0	3.5	0	1;6	n	-	-	-	-	-	-	0.00	0	1.5	0	1;2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2.0	0	3;1	n	0.00	0	2.0	0	0;4	n	0.00	0	1.5	0	0;3	n	0.00	0	2.0	0	0;4	n	0.75	3	1.0	3	0;2	y	1.00	4	0.0	4	0;0	y	1.00	6	0.0	6	0;0	y	ENSMUSG00000021033.12	Gstz1	chr12	protein_coding	glutathione transferase zeta 1 (maleylacetoacetate isomerase)
novel_NIR_4694	chr12	87204574	87204667	+	87202343	87204667	A5SS	ENSMUST00000222885.2	novel	0.25	2	6	2	6	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	5	0	5	0	y	0.75	3	1	3	1	y	0.43	3	4	3	4	y	0.57	4	3	4	3	y	0.43	3	4	3	4	y	0.71	5	2	5	2	y	1.00	6	0	6	0	n	1.00	7	0	7	0	y	ENSMUSG00000021033.12	Gstz1	chr12	protein_coding	glutathione transferase zeta 1 (maleylacetoacetate isomerase)
novel_NIR_4695	chr12	87269952	87270932	-	87270041	87270932	A3SS	ENSMUST00000222480.2	novel	0.00	0	3	0	3	n	0.00	0	11	0	11	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.17	1	5	1	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	ENSMUSG00000072919.5	Noxred1	chr12	protein_coding	NADP+ dependent oxidoreductase domain containing 1
novel_NIR_4696	chr12	87284210	87286328	-	87284210	87285349	5pMXE	ENSMUST00000222480.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000072919.5	Noxred1	chr12	protein_coding	NADP+ dependent oxidoreductase domain containing 1
novel_NIR_4697	chr12	87310771	87313063	-	87310771	87310870	5pMXE	ENSMUST00000021426.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.33	1	2	1	2	n	ENSMUSG00000021038.18	Vipas39	chr12	protein_coding	VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
novel_NIR_4698	chr12	87326976	87329420	-	87326976;87329157	87329074;87329420	ES	ENSMUST00000125733.8	novel	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000050671.13	Ism2	chr12	protein_coding	isthmin 2
novel_NIR_4699	chr12	87326976	87329420	-	87329267	87329420	3pMXE	ENSMUST00000145714.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000050671.13	Ism2	chr12	protein_coding	isthmin 2
novel_NIR_4700	chr12	87478308	87480593	-	87478308	87480889	A5SS	ENSMUST00000160113.8	novel	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.40	2	3	2	3	y	0.00	0	5	0	5	n	0.11	1	8	1	8	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	ENSMUSG00000079036.11	Alkbh1	chr12	protein_coding	alkB homolog 1, histone H2A dioxygenase
novel_NIR_4701	chr12	87488113	87490412	-	87485329	87490412	A3SS	ENSMUST00000162986.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000079036.11	Alkbh1	chr12	protein_coding	alkB homolog 1, histone H2A dioxygenase
novel_NIR_4702	chr12	87488113	87490412	-	87487184	87490412	A3SS	ENSMUST00000162961.8	novel	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.75	3	1	3	1	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000079036.11	Alkbh1	chr12	protein_coding	alkB homolog 1, histone H2A dioxygenase
novel_NIR_4703	chr12	87488113	87490412	-	87488113;87488550	87488413;87490412	ES	ENSMUST00000161712.8	novel	0.00	0	3.5	0	2;5	n	0.00	0	4.0	0	2;6	n	0.00	0	4.5	0	0;9	n	0.60	3	2.0	3	2;2	y	0.00	0	2.5	0	0;5	n	0.00	0	7.0	0	3;11	n	0.00	0	1.5	0	1;2	n	0.00	0	2.5	0	0;5	n	0.00	0	3.5	0	3;4	n	0.00	0	5.0	0	3;7	n	0.00	0	1.5	0	1;2	n	0.00	0	4.0	0	2;6	n	ENSMUSG00000079036.11	Alkbh1	chr12	protein_coding	alkB homolog 1, histone H2A dioxygenase
novel_NIR_4704	chr12	87488113	87490412	-	87488550	87490412	A3SS&ES	ENSMUST00000160113.8	novel	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.60	3	2	3	2	y	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	ENSMUSG00000079036.11	Alkbh1	chr12	protein_coding	alkB homolog 1, histone H2A dioxygenase
novel_NIR_4705	chr12	87494376	87496063	+	87494368	87496063	A5SS	ENSMUST00000077462.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	2	2	2	2	y	0.33	1	2	1	2	n	0.33	1	2	1	2	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	4	0	4	n	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000021040.16	Slirp	chr12	protein_coding	SRA stem-loop interacting RNA binding protein
novel_NIR_4706	chr12	8779149	8783412	+	8779149	8783273	A3SS	ENSMUST00000111123.9	novel	0.20	2	8	2	8	y	0.00	0	1	0	1	n	0.00	0	22	0	22	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.06	1	15	1	15	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.00	0	20	0	20	n	ENSMUSG00000020594.15	Pum2	chr12	protein_coding	pumilio RNA-binding family member 2
novel_NIR_4707	chr12	8779149	8783412	+	8779149	8793761	A3SS	ENSMUST00000178015.8	novel	0.15	2	11	2	11	y	0.00	0	8	0	8	n	0.00	0	36	0	36	n	0.00	0	26	0	26	n	0.00	0	14	0	14	n	0.04	1	23	1	23	n	0.00	0	17	0	17	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	22	0	22	n	0.00	0	10	0	10	n	0.00	0	32	0	32	n	ENSMUSG00000020594.15	Pum2	chr12	protein_coding	pumilio RNA-binding family member 2
novel_NIR_4708	chr12	8821701	8822353	+	8821839	8822353	5pMXE	ENSMUST00000160348.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	ENSMUSG00000020592.15	Sdc1	chr12	protein_coding	syndecan 1
novel_NIR_4709	chr12	8828116	8839407	+	8821839	8839407	A5SS	ENSMUST00000161883.2	novel	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	2	2	2	2	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000020592.15	Sdc1	chr12	protein_coding	syndecan 1
novel_NIR_4710	chr12	8832314	8839407	+	8821839	8839407	A5SS	ENSMUST00000161883.2	novel	0.33	1	2	1	2	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	5	0	5	0	y	ENSMUSG00000020592.15	Sdc1	chr12	protein_coding	syndecan 1
novel_NIR_4711	chr12	88336140	88338465	+	88335250	88338465	A5SS	ENSMUST00000101165.9	novel	0.00	0	16	0	16	n	0.00	0	27	0	27	n	0.12	2	15	2	15	n	0.00	0	35	0	35	n	0.06	3	45	3	45	n	0.00	0	22	0	22	n	0.03	1	39	1	39	n	0.15	3	17	3	17	y	0.00	0	16	0	16	n	0.00	0	50	0	50	n	0.14	3	18	3	18	n	0.00	0	39	0	39	n	ENSMUSG00000021044.16	Adck1	chr12	protein_coding	aarF domain containing kinase 1
novel_NIR_4712	chr12	88338548	88397791	+	88387247	88397791	5pMXE	ENSMUST00000223538.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000021044.16	Adck1	chr12	protein_coding	aarF domain containing kinase 1
novel_NIR_4713	chr12	9024179	9024311	+	9024179	9024934	A3SS	ENSMUST00000085745.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000066643.13	Wdr35	chr12	protein_coding	WD repeat domain 35
novel_NIR_4714	chr12	9088197	9091693	+	9088197	9091674	A3SS	ENSMUST00000219488.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000066637.3	Ttc32	chr12	protein_coding	tetratricopeptide repeat domain 32
novel_NIR_4715	chr12	91222513	91233510	-	91222513;91227410	91226760;91233510	ES	ENSMUST00000143415.8	novel	0.00	0	1.5	0	1;2	n	0.00	0	0.5	0	0;1	n	-	-	-	-	-	-	0.00	0	1.0	0	1;1	n	0.50	2	2.0	2	3;1	y	-	-	-	-	-	-	0.00	0	1.0	0	1;1	n	0.00	0	0.5	0	0;1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	0.5	0	0;1	n	0.00	0	2.0	0	1;3	n	ENSMUSG00000061533.17	Cep128	chr12	protein_coding	centrosomal protein 128
novel_NIR_4716	chr12	91542565	91552149	-	91542565	91553474	A5SS	ENSMUST00000021345.14	novel	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	16	0	16	n	0.00	0	27	0	27	n	0.00	0	17	0	17	n	0.00	0	11	0	11	n	0.00	0	21	0	21	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.27	3	8	3	8	y	0.00	0	8	0	8	n	0.00	0	6	0	6	n	ENSMUSG00000020962.15	Gtf2a1	chr12	protein_coding	general transcription factor II A, 1
novel_NIR_4717	chr12	91670010	91680701	-	91615844	91680701	A3SS	ENSMUST00000052969.15	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.45	5	6	5	6	y	0.14	1	6	1	6	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	4	0	4	n	1.00	1	0	1	0	n	0.38	3	5	3	5	y	0.50	4	4	4	4	y	0.67	2	1	2	1	y	ENSMUSG00000020961.16	Ston2	chr12	protein_coding	stonin 2
novel_NIR_4718	chr12	91670010	91680701	-	91670570	91680701	3pMXE	ENSMUST00000111609.3	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	1	0	1	0	n	1.00	5	0	5	0	y	0.50	1	1	1	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.17	1	5	1	5	n	0.33	3	6	3	6	y	0.44	4	5	4	5	y	0.50	2	2	2	2	y	ENSMUSG00000020961.16	Ston2	chr12	protein_coding	stonin 2
novel_NIR_4719	chr12	98209031	98218269	-	98209031	98209685	5pMXE	ENSMUST00000221063.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000021003.11	Galc	chr12	protein_coding	galactosylceramidase
novel_NIR_4720	chr12	98485091	98494889	-	98485091	98495439	A5SS	ENSMUST00000221906.2	novel	1.00	2	0	2	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	8	0	8	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	ENSMUSG00000033854.11	Kcnk10	chr12	protein_coding	potassium channel, subfamily K, member 10
novel_NIR_4721	chr12	98485091	98494889	-	98485091	98540416	A5SS	ENSMUST00000221305.2	novel	1.00	2	0	2	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	8	0	8	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	ENSMUSG00000033854.11	Kcnk10	chr12	protein_coding	potassium channel, subfamily K, member 10
novel_NIR_4722	chr12	98485091	98494889	-	98485091	98541300	A5SS	ENSMUST00000110113.3	novel	1.00	2	0	2	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	8	0	8	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	ENSMUSG00000033854.11	Kcnk10	chr12	protein_coding	potassium channel, subfamily K, member 10
novel_NIR_4723	chr12	98485091	98494889	-	98485091	98544045	A5SS	ENSMUST00000221240.2	novel	1.00	2	0	2	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	8	0	8	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	ENSMUSG00000033854.11	Kcnk10	chr12	protein_coding	potassium channel, subfamily K, member 10
novel_NIR_4724	chr12	98598296	98600249	+	98598296	98603825	A3SS	ENSMUST00000101146.4	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000021007.15	Spata7	chr12	protein_coding	spermatogenesis associated 7
novel_NIR_4725	chr12	98598296;98600410	98600249;98600483	+	98598296	98600483	cassetteExon	ENSMUST00000048402.12	novel	-	-	-	-	-	-	0.33	0.5	1	1;0	1	n	0.00	0.0	2	0;0	2	n	0.00	0.0	4	0;0	4	n	1.00	2.0	0	2;2	0	y	-	-	-	-	-	-	0.00	0.0	1	0;0	1	n	1.00	0.5	0	1;0	0	n	0.00	0.0	2	0;0	2	n	0.11	0.5	4	1;0	4	n	0.00	0.0	4	0;0	4	n	0.00	0.0	2	0;0	2	n	ENSMUSG00000021007.15	Spata7	chr12	protein_coding	spermatogenesis associated 7
novel_NIR_4726	chr12	98649874	98659816	-	98649874;98655887	98654449;98659816	ES	ENSMUST00000221148.2	novel	0.00	0	9.0	0	18;0	n	0.29	2	5.0	2	9;1	y	0.00	0	17.5	0	34;1	n	0.00	0	10.0	0	15;5	n	0.00	0	10.0	0	18;2	n	0.15	1	5.5	1	11;0	n	0.00	0	10.5	0	20;1	n	0.00	0	6.5	0	12;1	n	0.00	0	7.0	0	11;3	n	0.00	0	14.0	0	26;2	n	0.00	0	10.5	0	17;4	n	0.00	0	9.5	0	17;2	n	ENSMUSG00000021009.16	Ptpn21	chr12	protein_coding	protein tyrosine phosphatase, non-receptor type 21
novel_NIR_4727	chr12	98649874	98659816	-	98659215	98659816	A3SS&ES	ENSMUST00000221535.2	novel	0.00	0	3	0	3	n	0.25	2	6	2	6	y	0.00	0	25	0	25	n	0.00	0	2	0	2	n	0.00	0	18	0	18	n	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	ENSMUSG00000021009.16	Ptpn21	chr12	protein_coding	protein tyrosine phosphatase, non-receptor type 21
novel_NIR_4728	chr12	98713417	98719037	+	98713417;98713781	98713739;98719037	ES	ENSMUST00000110104.10	novel	0.04	2	42.5	2	39;46	n	0.00	0	19.0	0	19;19	n	0.06	3	51.0	3	41;61	n	0.03	2	55.5	2	51;60	n	0.04	2	54.5	2	52;57	n	0.17	2	10.0	2	12;8	y	0.02	1	49.5	1	39;60	n	0.00	0	26.0	0	23;29	n	0.00	0	31.5	0	26;37	n	0.04	2	47.5	2	40;55	n	0.00	0	37.5	0	36;39	n	0.02	1	47.5	1	46;49	n	ENSMUSG00000021012.17	Zc3h14	chr12	protein_coding	zinc finger CCCH type containing 14
novel_NIR_4729	chr12	98713417	98719037	+	98713781	98719037	A5SS	ENSMUST00000223083.2	novel	0.04	2	46	2	46	n	0.00	0	19	0	19	n	0.05	3	61	3	61	n	0.03	2	60	2	60	n	0.03	2	57	2	57	n	0.20	2	8	2	8	y	0.02	1	60	1	60	n	0.00	0	29	0	29	n	0.00	0	37	0	37	n	0.04	2	55	2	55	n	0.00	0	39	0	39	n	0.02	1	49	1	49	n	ENSMUSG00000021012.17	Zc3h14	chr12	protein_coding	zinc finger CCCH type containing 14
novel_NIR_4730	chr12	98771746	98776782	-	98771746	98776778	A5SS	ENSMUST00000223282.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.60	3	2	3	2	y	0.00	0	4	0	4	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	ENSMUSG00000051166.11	Eml5	chr12	protein_coding	echinoderm microtubule associated protein like 5
novel_NIR_4731	chr12	98787964	98790893	-	98784157	98790893	A3SS	ENSMUST00000065716.8	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000051166.11	Eml5	chr12	protein_coding	echinoderm microtubule associated protein like 5
novel_NIR_4732	chr12	98787964	98790893	-	98787873	98790893	A3SS	ENSMUST00000223282.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000051166.11	Eml5	chr12	protein_coding	echinoderm microtubule associated protein like 5
novel_NIR_4733	chr12	98791762	98793593	-	98791839	98793593	A3SS	ENSMUST00000065716.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	ENSMUSG00000051166.11	Eml5	chr12	protein_coding	echinoderm microtubule associated protein like 5
novel_NIR_4734	chr12	99358759	99359011	-	99355176	99359011	A3SS	ENSMUST00000177451.8	novel	0.29	2	5	2	5	y	0.00	0	2	0	2	n	0.07	1	13	1	13	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	ENSMUSG00000033713.13	Foxn3	chr12	protein_coding	forkhead box N3
novel_NIR_4735	chr12	99529374	99531402	+	99530215	99531402	5pMXE	ENSMUST00000222797.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000097917.3	Gm26839	chr12	lncRNA	predicted gene, 26839
novel_NIR_4736	chr12	99880376	99880880	+	99880376	99881709	A3SS	ENSMUST00000151019.8	novel	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	18	0	18	n	0.29	2	5	2	5	y	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	ENSMUSG00000021177.17	Tdp1	chr12	protein_coding	tyrosyl-DNA phosphodiesterase 1
novel_NIR_4737	chr12	99901366	99909898	+	99901366	99911499	A3SS	ENSMUST00000153627.8	novel	0.00	0	16	0	16	n	0.00	0	15	0	15	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.00	0	13	0	13	n	0.15	2	11	2	11	y	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	22	0	22	n	0.00	0	4	0	4	n	ENSMUSG00000021177.17	Tdp1	chr12	protein_coding	tyrosyl-DNA phosphodiesterase 1
novel_NIR_4738	chr13	100104268	100104342	-	100100388	100104342	A3SS	ENSMUST00000222083.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	ENSMUSG00000021646.10	Mccc2	chr13	protein_coding	methylcrotonoyl-Coenzyme A carboxylase 2 (beta)
novel_NIR_4739	chr13	100136824	100146158	-	100136824	100138795	A5SS&ES	ENSMUST00000221344.2	novel	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.50	3	3	3	3	y	0.14	1	6	1	6	n	0.00	0	13	0	13	n	-	-	-	-	-	-	0.55	6	5	6	5	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.22	2	7	2	7	y	0.50	1	1	1	1	n	ENSMUSG00000021646.10	Mccc2	chr13	protein_coding	methylcrotonoyl-Coenzyme A carboxylase 2 (beta)
novel_NIR_4740	chr13	100136824	100146158	-	100138947	100146158	3pMXE	ENSMUST00000221846.2	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	3	0	3	0	y	0.50	1	1	1	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	2	1	2	1	y	1.00	1	0	1	0	n	ENSMUSG00000021646.10	Mccc2	chr13	protein_coding	methylcrotonoyl-Coenzyme A carboxylase 2 (beta)
novel_NIR_4741	chr13	100162160	100163943	-	100162163	100163943	A3SS	ENSMUST00000038104.12	novel	0.13	3	20	3	20	n	0.50	4	4	4	4	y	0.27	4	11	4	11	y	0.32	7	15	7	15	y	0.38	9	15	9	15	y	0.33	2	4	2	4	y	0.29	4	10	4	10	y	0.50	4	4	4	4	y	0.36	4	7	4	7	y	0.57	8	6	8	6	y	0.57	4	3	4	3	y	0.00	0	10	0	10	n	ENSMUSG00000049658.14	Bdp1	chr13	protein_coding	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB
novel_NIR_4742	chr13	100167440	100171592	-	100167497	100171592	A3SS	ENSMUST00000038104.12	novel	0.09	1	10	1	10	n	0.00	0	6	0	6	n	0.00	0	19	0	19	n	0.00	0	7	0	7	n	0.06	1	17	1	17	n	0.25	2	6	2	6	y	0.22	2	7	2	7	y	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.11	2	16	2	16	n	0.00	0	7	0	7	n	0.11	1	8	1	8	n	ENSMUSG00000049658.14	Bdp1	chr13	protein_coding	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB
novel_NIR_4743	chr13	100333632	100338535	-	100333632	100338464	A5SS	ENSMUST00000117913.8	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	4	0	4	0	y	ENSMUSG00000078945.11	Naip2	chr13	protein_coding	NLR family, apoptosis inhibitory protein 2
novel_NIR_4744	chr13	100617155	100617475	-	100617155	100617720	A5SS	ENSMUST00000134842.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000021639.18	Gtf2h2	chr13	protein_coding	general transcription factor II H, polypeptide 2
novel_NIR_4745	chr13	100677692	100688924	-	100671632	100688924	A3SS	ENSMUST00000159515.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000021638.13	Ocln	chr13	protein_coding	occludin
novel_NIR_4746	chr13	100677692	100688924	-	100677692	100688880	A5SS	ENSMUST00000160859.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000021638.13	Ocln	chr13	protein_coding	occludin
novel_NIR_4747	chr13	100677692	100688924	-	100677692	100688895	A5SS	ENSMUST00000069756.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.50	1	1	1	1	n	0.25	1	3	1	3	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.25	1	3	1	3	n	ENSMUSG00000021638.13	Ocln	chr13	protein_coding	occludin
novel_NIR_4748	chr13	100677692	100688924	-	100677692	100689072	A5SS	ENSMUST00000022140.12	novel	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.22	2	7	2	7	y	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.14	1	6	1	6	n	0.06	1	15	1	15	n	0.11	1	8	1	8	n	0.00	0	9	0	9	n	0.09	1	10	1	10	n	0.00	0	13	0	13	n	0.04	1	22	1	22	n	ENSMUSG00000021638.13	Ocln	chr13	protein_coding	occludin
novel_NIR_4749	chr13	100734360	100737397	-	100734360;100737140	100736969;100737397	ES	ENSMUST00000022137.14	novel	0.23	5	16.5	5	22;11	y	0.00	0	23.0	0	23;23	n	0.00	0	39.5	0	41;38	n	0.00	0	22.5	0	29;16	n	0.00	0	34.0	0	29;39	n	0.00	0	21.5	0	23;20	n	0.00	0	28.5	0	30;27	n	0.00	0	16.0	0	18;14	n	0.04	1	26.0	1	34;18	n	0.03	1	35.5	1	37;34	n	0.00	0	23.5	0	24;23	n	0.03	1	29.0	1	25;33	n	ENSMUSG00000021636.16	Marveld2	chr13	protein_coding	MARVEL (membrane-associating) domain containing 2
novel_NIR_4750	chr13	100737545	100747941	-	100737545	100744285	A5SS&ES	ENSMUST00000163163.9	novel	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.06	3	44	3	44	n	0.08	2	23	2	23	n	0.08	4	44	4	44	n	0.16	3	16	3	16	y	0.22	5	18	5	18	y	0.00	0	15	0	15	n	0.08	1	11	1	11	n	0.12	4	29	4	29	n	0.00	0	22	0	22	n	0.00	0	32	0	32	n	ENSMUSG00000021636.16	Marveld2	chr13	protein_coding	MARVEL (membrane-associating) domain containing 2
novel_NIR_4751	chr13	100737545	100747941	-	100737545;100744320	100744285;100747941	ES	ENSMUST00000022137.14	novel	0.00	0	13.5	0	13;14	n	0.00	0	9.5	0	9;10	n	0.07	3	41.5	3	44;39	n	0.07	2	26.0	2	23;29	n	0.10	4	38.0	4	44;32	n	0.17	3	15.0	3	16;14	y	0.24	5	16.0	5	18;14	y	0.00	0	15.5	0	15;16	n	0.09	1	10.5	1	11;10	n	0.11	4	31.0	4	29;33	n	0.00	0	21.5	0	22;21	n	0.00	0	27.0	0	32;22	n	ENSMUSG00000021636.16	Marveld2	chr13	protein_coding	MARVEL (membrane-associating) domain containing 2
novel_NIR_4752	chr13	100744320	100753434	-	100744320	100753113	A5SS	ENSMUST00000163163.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	7	0	7	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.50	2	2	2	2	y	ENSMUSG00000021636.16	Marveld2	chr13	protein_coding	MARVEL (membrane-associating) domain containing 2
novel_NIR_4753	chr13	100744320	100753434	-	100744320;100749092	100747941;100753434	ES	ENSMUST00000022137.14	novel	0.00	0	7.0	0	14;0	n	0.00	0	5.5	0	10;1	n	0.00	0	22.0	0	39;5	n	0.06	1	15.5	1	29;2	n	0.00	0	18.5	0	32;5	n	0.22	2	7.0	2	14;0	y	0.00	0	7.0	0	14;0	n	0.00	0	9.5	0	16;3	n	0.00	0	5.0	0	10;0	n	0.00	0	17.0	0	33;1	n	0.14	2	12.0	2	21;3	n	0.13	2	13.0	2	22;4	n	ENSMUSG00000021636.16	Marveld2	chr13	protein_coding	MARVEL (membrane-associating) domain containing 2
novel_NIR_4754	chr13	100786289	100787108	-	100786289	100787330	A5SS	ENSMUST00000022136.14	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.60	3	2	3	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000021635.15	Rad17	chr13	protein_coding	RAD17 checkpoint clamp loader component
novel_NIR_4755	chr13	100806398	100814412	+	100806359	100814412	A5SS	ENSMUST00000170347.4	novel	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.00	0	22	0	22	n	0.00	0	9	0	9	n	0.22	2	7	2	7	y	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	ENSMUSG00000048924.15	Ccdc125	chr13	protein_coding	coiled-coil domain containing 125
novel_NIR_4756	chr13	100812680	100814412	+	100806359	100814412	A5SS	ENSMUST00000170347.4	novel	0.10	1	9	1	9	n	0.20	1	4	1	4	n	0.00	0	13	0	13	n	0.07	1	14	1	14	n	0.08	2	22	2	22	n	0.18	2	9	2	9	n	0.00	0	7	0	7	n	0.09	1	10	1	10	n	0.00	0	8	0	8	n	0.11	1	8	1	8	n	0.31	4	9	4	9	y	0.12	2	14	2	14	n	ENSMUSG00000048924.15	Ccdc125	chr13	protein_coding	coiled-coil domain containing 125
novel_NIR_4757	chr13	100855878	100857096	-	100855878	100857094	A5SS	ENSMUST00000091299.8	novel	0.00	0	42	0	42	n	0.00	0	30	0	30	n	0.00	0	67	0	67	n	0.00	0	35	0	35	n	0.00	0	38	0	38	n	0.00	0	26	0	26	n	0.19	6	25	6	25	y	0.06	2	32	2	32	n	0.03	1	28	1	28	n	0.00	0	34	0	34	n	0.04	1	24	1	24	n	0.00	0	50	0	50	n	ENSMUSG00000069089.9	Cdk7	chr13	protein_coding	cyclin-dependent kinase 7
novel_NIR_4758	chr13	100875703	100881038	-	100880332	100881038	A3SS&ES	ENSMUST00000076037.9	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000061474.12	Mrps36	chr13	protein_coding	mitochondrial ribosomal protein S36
novel_NIR_4759	chr13	100880332	100880549	-	100877739	100880549	A3SS	ENSMUST00000132955.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061474.12	Mrps36	chr13	protein_coding	mitochondrial ribosomal protein S36
novel_NIR_4760	chr13	100880332	100880549	-	100880332	100881038	A5SS	ENSMUST00000076037.9	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000061474.12	Mrps36	chr13	protein_coding	mitochondrial ribosomal protein S36
novel_NIR_4761	chr13	100950479	100950924	-	100950479	100953517	A5SS	ENSMUST00000225922.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000021629.11	Slc30a5	chr13	protein_coding	solute carrier family 30 (zinc transporter), member 5
novel_NIR_4762	chr13	103900927	103903117	-	103900927	103902919	A5SS&ES	ENSMUST00000210643.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	ENSMUSG00000032621.9	Srek1	chr13	protein_coding	splicing regulatory glutamine/lysine-rich protein 1
novel_NIR_4763	chr13	103900927	103903117	-	103900927	103904566	A5SS	ENSMUST00000211491.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000032621.9	Srek1	chr13	protein_coding	splicing regulatory glutamine/lysine-rich protein 1
novel_NIR_4764	chr13	103900927	103905825	-	103900514	103905825	A3SS	ENSMUST00000074616.7	novel	0.26	5	14	5	14	y	0.00	0	12	0	12	n	0.24	4	13	4	13	y	0.04	1	26	1	26	n	0.14	2	12	2	12	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.00	0	16	0	16	n	ENSMUSG00000032621.9	Srek1	chr13	protein_coding	splicing regulatory glutamine/lysine-rich protein 1
novel_NIR_4765	chr13	103900927	103905825	-	103900927	103902919	5pMXE	ENSMUST00000210643.2	novel	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000032621.9	Srek1	chr13	protein_coding	splicing regulatory glutamine/lysine-rich protein 1
novel_NIR_4766	chr13	103900927	103905825	-	103900927;103904730	103904566;103905825	ES	ENSMUST00000211491.2	novel	1.00	5	0.0	5	0;0	y	-	-	-	-	-	-	0.80	4	1.0	4	0;2	y	1.00	1	0.0	1	0;0	n	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032621.9	Srek1	chr13	protein_coding	splicing regulatory glutamine/lysine-rich protein 1
novel_NIR_4767	chr13	103900927	103905825	-	103903542	103905825	3pMXE	ENSMUST00000211139.2	novel	0.71	5	2	5	2	y	-	-	-	-	-	-	0.33	4	8	4	8	y	1.00	1	0	1	0	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000032621.9	Srek1	chr13	protein_coding	splicing regulatory glutamine/lysine-rich protein 1
novel_NIR_4768	chr13	103905958	103910902	-	103905958	103910076	5pMXE	ENSMUST00000211322.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032621.9	Srek1	chr13	protein_coding	splicing regulatory glutamine/lysine-rich protein 1
novel_NIR_4769	chr13	103959914	103964415	-	103959914	103970006	A5SS	ENSMUST00000188997.7	novel	0.05	1	18	1	18	n	0.05	1	18	1	18	n	0.00	0	11	0	11	n	0.00	0	17	0	17	n	0.06	2	29	2	29	n	0.00	0	16	0	16	n	0.04	1	27	1	27	n	0.10	1	9	1	9	n	0.25	3	9	3	9	y	0.00	0	26	0	26	n	0.00	0	10	0	10	n	0.33	7	14	7	14	y	ENSMUSG00000021709.15	Erbin	chr13	protein_coding	Erbb2 interacting protein
novel_NIR_4770	chr13	103961356	103970006	-	103959914	103970006	A3SS	ENSMUST00000188997.7	novel	0.00	0	18	0	18	n	0.00	0	18	0	18	n	0.15	2	11	2	11	y	0.00	0	17	0	17	n	0.00	0	29	0	29	n	0.00	0	16	0	16	n	0.00	0	27	0	27	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.07	2	26	2	26	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	ENSMUSG00000021709.15	Erbin	chr13	protein_coding	Erbb2 interacting protein
novel_NIR_4771	chr13	103961434	103970006	-	103961434;103966839	103966696;103970006	ES	ENSMUST00000169083.8	novel	0.22	1	3.5	1	0;7	n	0.35	3	5.5	3	0;11	y	0.00	0	19.0	0	0;38	n	0.00	0	7.0	0	0;14	n	0.00	0	12.0	0	0;24	n	0.00	0	2.5	0	0;5	n	0.18	2	9.0	2	0;18	y	0.00	0	5.5	0	0;11	n	0.00	0	10.5	0	1;20	n	0.00	0	15.0	0	0;30	n	0.00	0	7.0	0	0;14	n	0.00	0	11.0	0	0;22	n	ENSMUSG00000021709.15	Erbin	chr13	protein_coding	Erbb2 interacting protein
novel_NIR_4772	chr13	104189147	104192154	-	104189147	104195249	A5SS	ENSMUST00000109315.5	novel	0.24	4	13	4	13	n	0.36	5	9	5	9	n	0.03	1	31	1	31	n	0.09	3	30	3	30	n	0.18	6	28	6	28	n	0.00	0	13	0	13	n	0.26	9	26	9	26	n	0.07	1	13	1	13	n	0.05	1	21	1	21	n	0.26	12	35	12	35	n	0.19	5	22	5	22	y	0.06	2	32	2	32	n	ENSMUSG00000021710.12	Nln	chr13	protein_coding	neurolysin (metallopeptidase M3 family)
novel_NIR_4773	chr13	104189147;104192279	104192154;104195249	-	104189147	104195249	cassetteExon	ENSMUST00000109315.5	novel	0.19	3.0	13	4;2	13	y	0.36	5.0	9	5;5	9	y	0.03	1.0	31	1;1	31	n	0.09	3.0	30	3;3	30	n	0.11	3.5	28	6;1	28	n	0.00	0.0	13	0;0	13	n	0.31	11.5	26	9;14	26	y	0.04	0.5	13	1;0	13	n	0.05	1.0	21	1;1	21	n	0.20	8.5	35	12;5	35	y	0.10	2.5	22	5;0	22	n	0.14	5.0	32	2;8	32	n	ENSMUSG00000021710.12	Nln	chr13	protein_coding	neurolysin (metallopeptidase M3 family)
novel_NIR_4774	chr13	104209530	104212019	-	104209530	104245924	A5SS	ENSMUST00000109315.5	novel	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.00	0	31	0	31	n	0.00	0	28	0	28	n	0.00	0	34	0	34	n	0.25	3	9	3	9	y	0.05	1	19	1	19	n	0.00	0	14	0	14	n	0.05	1	18	1	18	n	0.00	0	32	0	32	n	0.00	0	16	0	16	n	0.00	0	14	0	14	n	ENSMUSG00000021710.12	Nln	chr13	protein_coding	neurolysin (metallopeptidase M3 family)
novel_NIR_4775	chr13	104929167	104932918	-	104929158	104932918	A3SS	ENSMUST00000022228.13	novel	0.00	0	17	0	17	n	0.05	1	18	1	18	n	0.03	1	35	1	35	n	0.16	5	27	5	27	y	0.09	2	20	2	20	n	0.07	1	13	1	13	n	0.07	2	26	2	26	n	0.00	0	9	0	9	n	0.00	0	19	0	19	n	0.00	0	24	0	24	n	0.19	4	17	4	17	y	0.00	0	23	0	23	n	ENSMUSG00000021715.13	Cwc27	chr13	protein_coding	CWC27 spliceosome-associated protein
novel_NIR_4776	chr13	108189488	108202728	-	108189488	108228068	A5SS	ENSMUST00000223734.2	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.50	1	1	1	1	n	1.00	1	0	1	0	n	ENSMUSG00000068184.8	Ndufaf2	chr13	protein_coding	NADH:ubiquinone oxidoreductase complex assembly factor 2
novel_NIR_4777	chr13	108202825	108217887	-	108216937	108217887	3pMXE	ENSMUST00000225830.2	novel	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	ENSMUSG00000068184.8	Ndufaf2	chr13	protein_coding	NADH:ubiquinone oxidoreductase complex assembly factor 2
novel_NIR_4778	chr13	108215872	108217887	-	108216937	108217887	3pMXE	ENSMUST00000225830.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000068184.8	Ndufaf2	chr13	protein_coding	NADH:ubiquinone oxidoreductase complex assembly factor 2
novel_NIR_4779	chr13	108234667	108294977	-	108160854	108294977	A3SS	ENSMUST00000225702.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000068184.8	Ndufaf2	chr13	protein_coding	NADH:ubiquinone oxidoreductase complex assembly factor 2
novel_NIR_4780	chr13	109718246	109718736	+	109718246	109876921	A3SS	ENSMUST00000079975.11	novel	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	ENSMUSG00000021699.18	Pde4d	chr13	protein_coding	phosphodiesterase 4D, cAMP specific
novel_NIR_4781	chr13	111579940	111584430	-	111579940	111585467	A5SS	ENSMUST00000156221.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	ENSMUSG00000032745.19	Gpbp1	chr13	protein_coding	GC-rich promoter binding protein 1
novel_NIR_4782	chr13	111912552	111932692	-	111912552	111944781	A5SS	ENSMUST00000145055.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021754.18	Map3k1	chr13	protein_coding	mitogen-activated protein kinase kinase kinase 1
novel_NIR_4783	chr13	111912552	111932692	-	111912552	111945037	A5SS	ENSMUST00000109267.9	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.20	3	12	3	12	y	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000021754.18	Map3k1	chr13	protein_coding	mitogen-activated protein kinase kinase kinase 1
novel_NIR_4784	chr13	111946281	111947318	+	111945881	111947318	A5SS	ENSMUST00000149252.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000085204.2	Gm15327	chr13	lncRNA	predicted gene 15327
novel_NIR_4785	chr13	112806265	112808391	+	112806265	112808394	A3SS	ENSMUST00000223674.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000047789.6	Slc38a9	chr13	protein_coding	solute carrier family 38, member 9
novel_NIR_4786	chr13	112806265	112808391	+	112806265	112820596	A3SS	ENSMUST00000223839.2	novel	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000047789.6	Slc38a9	chr13	protein_coding	solute carrier family 38, member 9
novel_NIR_4787	chr13	112806265	112808391	+	112806265	112822600	A3SS	ENSMUST00000052514.6	novel	0.00	0	7	0	7	n	0.33	1	2	1	2	n	0.12	1	7	1	7	n	0.00	0	8	0	8	n	0.06	1	16	1	16	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.09	1	10	1	10	n	0.00	0	7	0	7	n	0.20	3	12	3	12	y	ENSMUSG00000047789.6	Slc38a9	chr13	protein_coding	solute carrier family 38, member 9
novel_NIR_4788	chr13	112937800	112942895	+	112937800	112971393	A3SS	ENSMUST00000016144.12	novel	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.20	2	8	2	8	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000021759.15	Plpp1	chr13	protein_coding	phospholipid phosphatase 1
novel_NIR_4789	chr13	112937800	112942895	+	112937800	112987937	A3SS	ENSMUST00000070951.8	novel	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	17	0	17	n	0.00	0	5	0	5	n	0.00	0	18	0	18	n	0.00	0	7	0	7	n	0.00	0	24	0	24	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.20	2	8	2	8	y	0.00	0	7	0	7	n	0.00	0	16	0	16	n	ENSMUSG00000021759.15	Plpp1	chr13	protein_coding	phospholipid phosphatase 1
novel_NIR_4790	chr13	112971547	112987937	+	112937800	112987937	A5SS	ENSMUST00000070951.8	novel	0.17	2	10	2	10	y	0.00	0	7	0	7	n	0.06	1	17	1	17	n	0.00	0	5	0	5	n	0.10	2	18	2	18	n	0.12	1	7	1	7	n	0.04	1	24	1	24	n	0.00	0	8	0	8	n	0.40	2	3	2	3	y	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	16	0	16	n	ENSMUSG00000021759.15	Plpp1	chr13	protein_coding	phospholipid phosphatase 1
novel_NIR_4791	chr13	112971547	112987937	+	112971547	112993280	A3SS	ENSMUST00000016144.12	novel	0.18	2	9	2	9	y	-	-	-	-	-	-	0.07	1	13	1	13	n	0.00	0	8	0	8	n	0.15	2	11	2	11	y	0.17	1	5	1	5	n	0.06	1	15	1	15	n	0.00	0	5	0	5	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	ENSMUSG00000021759.15	Plpp1	chr13	protein_coding	phospholipid phosphatase 1
novel_NIR_4792	chr13	112981863	112993280	+	112971547	112993280	A5SS	ENSMUST00000016144.12	novel	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.27	3	8	3	8	y	0.00	0	6	0	6	n	ENSMUSG00000021759.15	Plpp1	chr13	protein_coding	phospholipid phosphatase 1
novel_NIR_4793	chr13	112981863	112993280	+	112988088	112993280	A5SS&ES	ENSMUST00000070951.8	novel	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	21	0	21	n	0.00	0	8	0	8	n	0.00	0	23	0	23	n	0.00	0	23	0	23	n	0.00	0	27	0	27	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.20	2	8	2	8	y	0.19	3	13	3	13	y	0.00	0	14	0	14	n	ENSMUSG00000021759.15	Plpp1	chr13	protein_coding	phospholipid phosphatase 1
novel_NIR_4794	chr13	113005645	113009433	-	113006001	113009433	A3SS&ES	ENSMUST00000223559.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000016018.5	Mtrex	chr13	protein_coding	Mtr4 exosome RNA helicase
novel_NIR_4795	chr13	113124818	113126106	+	113124818	113125425	3pMXE	ENSMUST00000224100.2	novel	0.50	2	2	2	2	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000042417.6	Ccno	chr13	protein_coding	cyclin O
novel_NIR_4796	chr13	113124818	113126106	+	113124818;113125610	113125425;113126106	ES	ENSMUST00000038404.6	novel	0.67	2	1.0	2	2;0	y	0.00	0	2.0	0	2;2	n	0.00	0	1.5	0	0;3	n	0.40	1	1.5	1	2;1	n	0.00	0	0.5	0	0;1	n	-	-	-	-	-	-	0.00	0	1.0	0	1;1	n	-	-	-	-	-	-	0.00	0	2.0	0	2;2	n	0.00	0	1.0	0	2;0	n	0.00	0	0.5	0	1;0	n	0.00	0	0.5	0	1;0	n	ENSMUSG00000042417.6	Ccno	chr13	protein_coding	cyclin O
novel_NIR_4797	chr13	113124818	113126106	+	113125610	113126106	A5SS	ENSMUST00000225555.2	novel	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000042417.6	Ccno	chr13	protein_coding	cyclin O
novel_NIR_4798	chr13	113617621	113621054	-	113603055	113621054	A3SS	ENSMUST00000223835.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000114790.2	4921509O07Rik	chr13	lncRNA	RIKEN cDNA 4921509O07 gene
novel_NIR_4799	chr13	113667439	113671331	-	113667439;113668773	113668545;113671331	ES	ENSMUST00000225395.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	9	0.0	9	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0.0	4	0;0	y	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	1.00	2	0.0	2	0;0	y	ENSMUSG00000114715.2	Gm34471	chr13	lncRNA	predicted gene, 34471
novel_NIR_4800	chr13	113671667	113671801	-	113671667	113675872	A5SS	ENSMUST00000225395.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000114715.2	Gm34471	chr13	lncRNA	predicted gene, 34471
novel_NIR_4801	chr13	113731398	113732578	-	113731398	113749396	A5SS	ENSMUST00000224883.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000042364.12	Snx18	chr13	protein_coding	sorting nexin 18
novel_NIR_4802	chr13	113731398	113732578	-	113731398	113749587	A5SS	ENSMUST00000223993.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000042364.12	Snx18	chr13	protein_coding	sorting nexin 18
novel_NIR_4803	chr13	113731398	113740422	-	113731398	113749396	A5SS	ENSMUST00000224883.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000042364.12	Snx18	chr13	protein_coding	sorting nexin 18
novel_NIR_4804	chr13	113731398	113740422	-	113731398	113749587	A5SS	ENSMUST00000223993.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000042364.12	Snx18	chr13	protein_coding	sorting nexin 18
novel_NIR_4805	chr13	113731398	113752931	-	113731398	113749587	5pMXE	ENSMUST00000223993.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000042364.12	Snx18	chr13	protein_coding	sorting nexin 18
novel_NIR_4806	chr13	114205309	114291240	+	114104326	114291240	A5SS	ENSMUST00000091201.7	novel	0.00	0	5	0	5	n	0.14	1	6	1	6	n	0.44	19	24	19	24	y	0.00	0	13	0	13	n	0.20	3	12	3	12	y	0.36	5	9	5	9	y	0.39	7	11	7	11	y	0.33	6	12	6	12	y	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.40	2	3	2	3	y	0.24	4	13	4	13	y	ENSMUSG00000042348.11	Arl15	chr13	protein_coding	ADP-ribosylation factor-like 15
novel_NIR_4807	chr13	114224622	114291240	+	114104326	114291240	A5SS	ENSMUST00000091201.7	novel	0.00	0	5	0	5	n	0.25	2	6	2	6	y	0.00	0	24	0	24	n	0.35	7	13	7	13	y	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.08	1	11	1	11	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.40	2	3	2	3	y	0.32	6	13	6	13	y	ENSMUSG00000042348.11	Arl15	chr13	protein_coding	ADP-ribosylation factor-like 15
novel_NIR_4808	chr13	114488062	114524166	-	114488062	114523944	A5SS&ES	ENSMUST00000225707.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	ENSMUSG00000021764.9	Ndufs4	chr13	protein_coding	NADH:ubiquinone oxidoreductase core subunit S4
novel_NIR_4809	chr13	114955470	114955872	+	114955177	114955872	A5SS	ENSMUST00000184672.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000015536.15	Mocs2	chr13	protein_coding	molybdenum cofactor synthesis 2
novel_NIR_4810	chr13	114955470	114955872	+	114955544	114955872	A5SS	ENSMUST00000164871.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	ENSMUSG00000015536.15	Mocs2	chr13	protein_coding	molybdenum cofactor synthesis 2
novel_NIR_4811	chr13	114957482	114961108	+	114957482	114959691	A3SS&ES	ENSMUST00000184781.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	2	0	2	0	y	ENSMUSG00000015536.15	Mocs2	chr13	protein_coding	molybdenum cofactor synthesis 2
novel_NIR_4812	chr13	114957482	114961108	+	114957482	114961747	A3SS	ENSMUST00000184046.8	novel	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.57	4	3	4	3	y	0.40	2	3	2	3	y	ENSMUSG00000015536.15	Mocs2	chr13	protein_coding	molybdenum cofactor synthesis 2
novel_NIR_4813	chr13	114957482	114961108	+	114957482	114962694	A3SS	ENSMUST00000184335.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	0.67	2	1	2	1	y	ENSMUSG00000015536.15	Mocs2	chr13	protein_coding	molybdenum cofactor synthesis 2
novel_NIR_4814	chr13	114961226	114961747	+	114957482	114961747	A5SS	ENSMUST00000184046.8	novel	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.20	4	16	4	16	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.50	6	6	6	6	y	0.75	3	1	3	1	y	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000015536.15	Mocs2	chr13	protein_coding	molybdenum cofactor synthesis 2
novel_NIR_4815	chr13	114961636	114961747	+	114957482	114961747	A5SS	ENSMUST00000184046.8	novel	0.00	0	3	0	3	n	0.25	2	6	2	6	y	0.00	0	16	0	16	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.20	2	8	2	8	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000015536.15	Mocs2	chr13	protein_coding	molybdenum cofactor synthesis 2
novel_NIR_4816	chr13	114961897	114962635	+	114961897	114962741	A3SS	ENSMUST00000183407.2	novel	0.11	1	8	1	8	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.18	2	9	2	9	y	-	-	-	-	-	-	-	-	-	-	-	-	0.17	1	5	1	5	n	0.17	1	5	1	5	n	0.40	2	3	2	3	y	ENSMUSG00000015536.15	Mocs2	chr13	protein_coding	molybdenum cofactor synthesis 2
novel_NIR_4817	chr13	115226158	115226588	+	115226369	115226588	A5SS	ENSMUST00000225343.2	novel	0.44	7	9	7	9	y	0.62	10	6	10	6	y	0.84	37	7	37	7	y	0.73	22	8	22	8	y	0.62	25	15	25	15	y	0.52	11	10	11	10	y	0.57	8	6	8	6	y	0.67	20	10	20	10	y	0.67	4	2	4	2	y	0.69	9	4	9	4	y	0.60	6	4	6	4	y	0.54	7	6	7	6	y	ENSMUSG00000114255.2	Gm10734	chr13	lncRNA	predicted gene 10734
novel_NIR_4818	chr13	119509127	119518212	-	119506681	119518212	A3SS	ENSMUST00000069902.13	novel	0.20	1	4	1	4	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.67	8	4	8	4	y	0.56	5	4	5	4	y	0.00	0	1	0	1	n	0.45	5	6	5	6	y	0.43	3	4	3	4	y	1.00	4	0	4	0	y	0.38	5	8	5	8	y	0.50	3	3	3	3	y	0.33	2	4	2	4	y	ENSMUSG00000025453.19	Nnt	chr13	protein_coding	nicotinamide nucleotide transhydrogenase
novel_NIR_4819	chr13	119509127	119518212	-	119509127;119511310	119511165;119518212	ES	ENSMUST00000099149.10	novel	0.04	1	25.0	1	28;22	n	0.05	1	21.0	1	20;22	n	0.00	0	42.5	0	49;36	n	0.15	8	46.5	8	38;55	y	0.07	5	67.0	5	72;62	n	0.00	0	32.5	0	28;37	n	0.06	5	75.0	5	77;73	n	0.09	3	32.0	3	31;33	n	0.16	4	21.5	4	24;19	y	0.08	5	60.0	5	61;59	n	0.07	3	37.5	3	42;33	n	0.04	2	53.0	2	65;41	n	ENSMUSG00000025453.19	Nnt	chr13	protein_coding	nicotinamide nucleotide transhydrogenase
novel_NIR_4820	chr13	119541290	119545236	-	119541290	119545439	A5SS	ENSMUST00000069902.13	novel	0.00	0	31	0	31	n	0.00	0	22	0	22	n	0.24	6	19	6	19	y	0.00	0	43	0	43	n	0.02	1	49	1	49	n	0.05	1	20	1	20	n	0.00	0	55	0	55	n	0.00	0	31	0	31	n	0.00	0	34	0	34	n	0.00	0	60	0	60	n	0.00	0	37	0	37	n	0.00	0	40	0	40	n	ENSMUSG00000025453.19	Nnt	chr13	protein_coding	nicotinamide nucleotide transhydrogenase
novel_NIR_4821	chr13	119541290	119545263	-	119541290	119545439	A5SS	ENSMUST00000069902.13	novel	0.06	2	31	2	31	n	0.04	1	22	1	22	n	0.17	4	19	4	19	y	0.02	1	43	1	43	n	0.09	5	49	5	49	n	0.13	3	20	3	20	n	0.02	1	55	1	55	n	0.09	3	31	3	31	n	0.00	0	34	0	34	n	0.00	0	60	0	60	n	0.00	0	37	0	37	n	0.00	0	40	0	40	n	ENSMUSG00000025453.19	Nnt	chr13	protein_coding	nicotinamide nucleotide transhydrogenase
novel_NIR_4822	chr13	119541290	119565123	-	119541290	119545439	5pMXE	ENSMUST00000069902.13	novel	0.00	0	31	0	31	n	0.15	4	22	4	22	y	0.00	0	19	0	19	n	0.07	3	43	3	43	n	0.04	2	49	2	49	n	0.09	2	20	2	20	n	0.00	0	55	0	55	n	0.06	2	31	2	31	n	0.06	2	34	2	34	n	0.00	0	60	0	60	n	0.00	0	37	0	37	n	0.02	1	40	1	40	n	ENSMUSG00000025453.19	Nnt	chr13	protein_coding	nicotinamide nucleotide transhydrogenase
novel_NIR_4823	chr13	119599655	119601816	+	119599655	119601101	A3SS&ES	ENSMUST00000225186.2	novel	0.24	4	13	4	13	y	0.00	0	6	0	6	n	0.00	0	17	0	17	n	0.20	1	4	1	4	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.00	0	12	0	12	n	0.00	0	18	0	18	n	ENSMUSG00000062822.9	4833420G17Rik	chr13	protein_coding	RIKEN cDNA 4833420G17 gene
novel_NIR_4824	chr13	119599655	119601816	+	119599655	119602547	A3SS	ENSMUST00000026519.10	novel	0.16	4	21	4	21	y	0.00	0	22	0	22	n	0.00	0	36	0	36	n	0.03	1	35	1	35	n	0.00	0	28	0	28	n	0.00	0	25	0	25	n	0.00	0	21	0	21	n	0.00	0	11	0	11	n	0.00	0	21	0	21	n	0.04	1	27	1	27	n	0.00	0	23	0	23	n	0.00	0	30	0	30	n	ENSMUSG00000062822.9	4833420G17Rik	chr13	protein_coding	RIKEN cDNA 4833420G17 gene
novel_NIR_4825	chr13	119599655	119601816	+	119599655	119602610	A3SS	ENSMUST00000224081.2	novel	0.36	4	7	4	7	y	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.11	1	8	1	8	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	16	0	16	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.06	1	16	1	16	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	ENSMUSG00000062822.9	4833420G17Rik	chr13	protein_coding	RIKEN cDNA 4833420G17 gene
novel_NIR_4826	chr13	119599655	119601816	+	119599655;119601226	119601101;119601816	ES	ENSMUST00000224312.2	novel	0.22	4	14.5	4	13;16	y	0.00	0	6.0	0	6;6	n	0.00	0	10.5	0	17;4	n	0.20	1	4.0	1	4;4	n	0.00	0	12.5	0	15;10	n	0.00	0	3.5	0	6;1	n	0.00	0	7.5	0	8;7	n	0.00	0	4.5	0	7;2	n	0.00	0	2.0	0	1;3	n	0.17	1	5.0	1	4;6	n	0.00	0	8.0	0	12;4	n	0.00	0	14.0	0	18;10	n	ENSMUSG00000062822.9	4833420G17Rik	chr13	protein_coding	RIKEN cDNA 4833420G17 gene
novel_NIR_4827	chr13	119601226	119602547	+	119599655	119602547	A5SS	ENSMUST00000026519.10	novel	0.00	0	21	0	21	n	0.00	0	22	0	22	n	0.03	1	36	1	36	n	0.00	0	35	0	35	n	0.00	0	28	0	28	n	0.00	0	25	0	25	n	0.00	0	21	0	21	n	0.00	0	11	0	11	n	0.00	0	21	0	21	n	0.07	2	27	2	27	n	0.15	4	23	4	23	y	0.00	0	30	0	30	n	ENSMUSG00000062822.9	4833420G17Rik	chr13	protein_coding	RIKEN cDNA 4833420G17 gene
novel_NIR_4828	chr13	119601226	119602547	+	119601226	119601816	A3SS	ENSMUST00000224312.2	novel	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.25	2	6	2	6	y	0.50	4	4	4	4	y	0.00	0	10	0	10	n	ENSMUSG00000062822.9	4833420G17Rik	chr13	protein_coding	RIKEN cDNA 4833420G17 gene
novel_NIR_4829	chr13	119601226	119602547	+	119601226	119602610	A3SS	ENSMUST00000225186.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.57	4	3	4	3	y	0.00	0	2	0	2	n	ENSMUSG00000062822.9	4833420G17Rik	chr13	protein_coding	RIKEN cDNA 4833420G17 gene
novel_NIR_4830	chr13	119602485	119602610	+	119599655	119602610	A5SS	ENSMUST00000224081.2	novel	0.00	0	7	0	7	n	0.40	2	3	2	3	y	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.17	1	5	1	5	n	0.11	2	16	2	16	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.11	2	16	2	16	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	ENSMUSG00000062822.9	4833420G17Rik	chr13	protein_coding	RIKEN cDNA 4833420G17 gene
novel_NIR_4831	chr13	119602485	119602610	+	119601226	119602610	A5SS	ENSMUST00000225186.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	2	2	2	2	y	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000062822.9	4833420G17Rik	chr13	protein_coding	RIKEN cDNA 4833420G17 gene
novel_NIR_4832	chr13	119625634	120068185	+	119624736	120068185	A5SS	ENSMUST00000223912.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000074634.13	Tmem267	chr13	protein_coding	transmembrane protein 267
novel_NIR_4833	chr13	120068566	120107405	+	120068566	120070728	3pMXE	ENSMUST00000223912.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000074634.13	Tmem267	chr13	protein_coding	transmembrane protein 267
novel_NIR_4834	chr13	120068566	120107405	+	120085472	120107405	5pMXE	ENSMUST00000099241.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000074715.4	Ccl28	chr13	protein_coding	chemokine (C-C motif) ligand 28
novel_NIR_4835	chr13	120152049	120161238	+	120152049	120156426	A3SS&ES	ENSMUST00000225543.2	novel	0.00	0	13	0	13	n	0.25	1	3	1	3	n	0.00	0	17	0	17	n	0.00	0	15	0	15	n	0.16	7	38	7	38	y	0.00	0	13	0	13	n	0.00	0	22	0	22	n	0.00	0	17	0	17	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	19	0	19	n	0.00	0	16	0	16	n	ENSMUSG00000093930.3	Hmgcs1	chr13	protein_coding	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1
novel_NIR_4836	chr13	120229550	120230242	-	120228562	120230242	A3SS	ENSMUST00000177916.8	novel	0.00	0	27	0	27	n	0.00	0	25	0	25	n	0.02	1	59	1	59	n	0.00	0	43	0	43	n	0.00	0	36	0	36	n	0.00	0	21	0	21	n	0.02	1	40	1	40	n	0.19	5	22	5	22	y	0.00	0	22	0	22	n	0.00	0	40	0	40	n	0.00	0	26	0	26	n	0.00	0	25	0	25	n	ENSMUSG00000094870.9	Zfp131	chr13	protein_coding	zinc finger protein 131
novel_NIR_4837	chr13	120237525	120237621	-	120237525	120237628	A5SS	ENSMUST00000178271.3	novel	0.00	0	18	0	18	n	0.00	0	19	0	19	n	0.09	4	39	4	39	n	0.13	2	13	2	13	n	0.00	0	20	0	20	n	0.06	1	16	1	16	n	0.05	1	21	1	21	n	0.25	2	6	2	6	y	0.12	1	7	1	7	n	0.30	7	16	7	16	y	0.22	2	7	2	7	y	0.17	2	10	2	10	y	ENSMUSG00000094870.9	Zfp131	chr13	protein_coding	zinc finger protein 131
novel_NIR_4838	chr13	120237985	120239969	-	120237985	120239532	A5SS&ES	ENSMUST00000225484.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	n	ENSMUSG00000094870.9	Zfp131	chr13	protein_coding	zinc finger protein 131
novel_NIR_4839	chr13	120237985	120239969	-	120237985	120239643	5pMXE	ENSMUST00000224969.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000094870.9	Zfp131	chr13	protein_coding	zinc finger protein 131
novel_NIR_4840	chr13	120251823	120252747	-	120251823	120252041	5pMXE	ENSMUST00000223813.2	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	17	0	17	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	4	0	4	n	ENSMUSG00000094870.9	Zfp131	chr13	protein_coding	zinc finger protein 131
novel_NIR_4841	chr13	120251823	120252747	-	120251823	120252315	5pMXE	ENSMUST00000177916.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	ENSMUSG00000094870.9	Zfp131	chr13	protein_coding	zinc finger protein 131
novel_NIR_4842	chr13	120251823	120252747	-	120251823	120252356	5pMXE	ENSMUST00000223722.2	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.20	1	4	1	4	n	0.00	0	6	0	6	n	ENSMUSG00000094870.9	Zfp131	chr13	protein_coding	zinc finger protein 131
novel_NIR_4843	chr13	12469745	12474055	-	12469826	12474055	A3SS	ENSMUST00000143693.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.80	4	1	4	1	y	ENSMUSG00000057554.14	Lgals8	chr13	protein_coding	lectin, galactose binding, soluble 8
novel_NIR_4844	chr13	12469826	12469941	-	12469826	12474055	A5SS	ENSMUST00000143693.8	novel	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.17	1	5	1	5	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.33	2	4	2	4	y	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.83	5	1	5	1	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000057554.14	Lgals8	chr13	protein_coding	lectin, galactose binding, soluble 8
novel_NIR_4845	chr13	12471313	12471469	-	12471313	12476308	A5SS	ENSMUST00000135166.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000057554.14	Lgals8	chr13	protein_coding	lectin, galactose binding, soluble 8
novel_NIR_4846	chr13	12619350	12619876	+	12619350	12624457	A3SS	ENSMUST00000220811.2	novel	0.80	4	1	4	1	y	0.71	5	2	5	2	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	0.00	0	7	0	7	n	0.60	3	2	3	2	y	0.00	0	6	0	6	n	0.50	2	2	2	2	y	ENSMUSG00000057069.8	Ero1b	chr13	protein_coding	endoplasmic reticulum oxidoreductase 1 beta
novel_NIR_4847	chr13	12619350	12620620	+	12619350	12620584	A3SS	ENSMUST00000221560.2	novel	0.10	3	27	3	27	n	0.05	2	42	2	42	n	0.00	0	30	0	30	n	0.00	0	25	0	25	n	0.00	0	37	0	37	n	0.00	0	16	0	16	n	0.08	4	47	4	47	n	0.00	0	27	0	27	n	0.00	0	44	0	44	n	0.00	0	30	0	30	n	0.15	6	34	6	34	y	0.05	2	36	2	36	n	ENSMUSG00000057069.8	Ero1b	chr13	protein_coding	endoplasmic reticulum oxidoreductase 1 beta
novel_NIR_4848	chr13	12619350	12620620	+	12619350	12624457	A3SS	ENSMUST00000220811.2	novel	0.75	3	1	3	1	y	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.50	6	6	6	6	y	0.50	2	2	2	2	y	ENSMUSG00000057069.8	Ero1b	chr13	protein_coding	endoplasmic reticulum oxidoreductase 1 beta
novel_NIR_4849	chr13	12619350	12624127	+	12619350	12620584	3pMXE	ENSMUST00000221560.2	novel	0.00	0	27	0	27	n	0.16	8	42	8	42	y	0.03	1	30	1	30	n	0.00	0	25	0	25	n	0.21	10	37	10	37	y	0.00	0	16	0	16	n	0.15	8	47	8	47	y	0.07	2	27	2	27	n	0.04	2	44	2	44	n	0.21	8	30	8	30	y	0.06	2	34	2	34	n	0.08	3	36	3	36	n	ENSMUSG00000057069.8	Ero1b	chr13	protein_coding	endoplasmic reticulum oxidoreductase 1 beta
novel_NIR_4850	chr13	12619350	12624127	+	12619350	12624457	A3SS	ENSMUST00000220811.2	novel	0.00	0	1	0	1	n	0.80	8	2	8	2	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	10	0	10	0	y	-	-	-	-	-	-	1.00	8	0	8	0	y	1.00	2	0	2	0	y	0.22	2	7	2	7	y	0.80	8	2	8	2	y	0.25	2	6	2	6	y	0.60	3	2	3	2	y	ENSMUSG00000057069.8	Ero1b	chr13	protein_coding	endoplasmic reticulum oxidoreductase 1 beta
novel_NIR_4851	chr13	12619350	12632288	+	12619350	12624457	3pMXE	ENSMUST00000220811.2	novel	0.75	3	1	3	1	y	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.22	2	7	2	7	y	0.00	0	2	0	2	n	0.14	1	6	1	6	n	0.33	1	2	1	2	n	ENSMUSG00000057069.8	Ero1b	chr13	protein_coding	endoplasmic reticulum oxidoreductase 1 beta
novel_NIR_4852	chr13	12619350	12634468	+	12619350	12624457	3pMXE	ENSMUST00000220811.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	7	0	7	n	0.60	3	2	3	2	y	0.14	1	6	1	6	n	0.00	0	2	0	2	n	ENSMUSG00000057069.8	Ero1b	chr13	protein_coding	endoplasmic reticulum oxidoreductase 1 beta
novel_NIR_4853	chr13	12621772	12624457	+	12619350	12624457	A5SS	ENSMUST00000220811.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.33	3	6	3	6	y	0.00	0	2	0	2	n	ENSMUSG00000057069.8	Ero1b	chr13	protein_coding	endoplasmic reticulum oxidoreductase 1 beta
novel_NIR_4854	chr13	13517903	13518160	+	13517903	13518037	A3SS	ENSMUST00000209949.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.83	5	1	5	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000110123.2	Gm18562	chr13	unprocessed_pseudogene	predicted gene, 18562
novel_NIR_4855	chr13	13791330	13795131	+	13791330	13805594	A3SS	ENSMUST00000223053.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	6	0	6	n	ENSMUSG00000019726.13	Lyst	chr13	protein_coding	lysosomal trafficking regulator
novel_NIR_4856	chr13	13823551	13824912	+	13823551	13824909	A3SS	ENSMUST00000110559.3	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	ENSMUSG00000019726.13	Lyst	chr13	protein_coding	lysosomal trafficking regulator
novel_NIR_4857	chr13	13856107	13857628	+	13856107	13857640	A3SS	ENSMUST00000110559.3	novel	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	16	0	16	n	0.20	2	8	2	8	y	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	ENSMUSG00000019726.13	Lyst	chr13	protein_coding	lysosomal trafficking regulator
novel_NIR_4858	chr13	14037804	14065695	+	14044282	14065695	A5SS&ES	ENSMUST00000223012.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000113811.2	Gm47882	chr13	lncRNA	predicted gene, 47882
novel_NIR_4859	chr13	14171633	14172964	+	14171609	14172964	A5SS	ENSMUST00000222420.2	novel	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000039242.11	B3galnt2	chr13	protein_coding	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2
novel_NIR_4860	chr13	14171633	14172964	+	14171637	14172964	A5SS	ENSMUST00000221974.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000039242.11	B3galnt2	chr13	protein_coding	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2
novel_NIR_4861	chr13	14175763	14177145	-	14175763	14178118	A5SS	ENSMUST00000160553.8	novel	0.00	0	8	0	8	n	0.20	4	16	4	16	y	0.00	0	10	0	10	n	0.07	1	14	1	14	n	0.08	2	24	2	24	n	0.00	0	4	0	4	n	0.18	4	18	4	18	y	0.00	0	4	0	4	n	0.36	4	7	4	7	y	0.22	6	21	6	21	y	0.00	0	9	0	9	n	0.67	4	2	4	2	y	ENSMUSG00000039233.13	Tbce	chr13	protein_coding	tubulin-specific chaperone E
novel_NIR_4862	chr13	14175763	14178115	-	14175763	14178118	A5SS	ENSMUST00000160553.8	novel	0.33	4	8	4	8	y	0.00	0	16	0	16	n	0.38	6	10	6	10	y	0.33	7	14	7	14	y	0.00	0	24	0	24	n	0.00	0	4	0	4	n	0.10	2	18	2	18	n	0.43	3	4	3	4	y	0.12	1	7	1	7	n	0.00	0	21	0	21	n	0.10	1	9	1	9	n	0.50	2	2	2	2	y	ENSMUSG00000039233.13	Tbce	chr13	protein_coding	tubulin-specific chaperone E
novel_NIR_4863	chr13	14175763	14178115	-	14175763	14178128	A5SS	ENSMUST00000159893.8	novel	0.09	4	40	4	40	n	0.00	0	32	0	32	n	0.10	6	55	6	55	n	0.26	7	20	7	20	y	0.00	0	31	0	31	n	0.00	0	29	0	29	n	0.07	2	27	2	27	n	0.09	3	29	3	29	n	0.02	1	47	1	47	n	0.00	0	58	0	58	n	0.03	1	35	1	35	n	0.04	2	51	2	51	n	ENSMUSG00000039233.13	Tbce	chr13	protein_coding	tubulin-specific chaperone E
novel_NIR_4864	chr13	14177256	14178118	-	14175763	14178118	A3SS	ENSMUST00000160553.8	novel	0.00	0	8	0	8	n	0.00	0	16	0	16	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	24	0	24	n	0.33	2	4	2	4	y	0.00	0	18	0	18	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	21	0	21	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	ENSMUSG00000039233.13	Tbce	chr13	protein_coding	tubulin-specific chaperone E
novel_NIR_4865	chr13	14184316;14184545	14184471;14185127	-	14184316	14185127	cassetteExon	ENSMUST00000159893.8	novel	0.28	3.5	9	2;5	9	y	0.09	1.0	10	1;1	10	n	0.02	1.0	41	2;0	41	n	0.06	1.0	15	0;2	15	n	0.02	0.5	20	1;0	20	n	0.00	0.0	18	0;0	18	n	0.05	1.0	18	0;2	18	n	0.04	0.5	11	0;1	11	n	0.09	1.5	15	2;1	15	n	0.04	1.0	25	0;2	25	n	0.07	1.0	13	1;1	13	n	0.00	0.0	24	0;0	24	n	ENSMUSG00000039233.13	Tbce	chr13	protein_coding	tubulin-specific chaperone E
novel_NIR_4866	chr13	14194472	14202305	-	14194472	14202283	A5SS	ENSMUST00000039894.13	novel	0.26	6	17	6	17	y	0.00	0	16	0	16	n	0.00	0	59	0	59	n	0.03	1	31	1	31	n	0.16	7	37	7	37	y	0.00	0	10	0	10	n	0.10	3	26	3	26	n	0.00	0	23	0	23	n	0.23	5	17	5	17	y	0.00	0	42	0	42	n	0.00	0	19	0	19	n	0.03	1	38	1	38	n	ENSMUSG00000039233.13	Tbce	chr13	protein_coding	tubulin-specific chaperone E
novel_NIR_4867	chr13	14194472	14202305	-	14194472	14203861	A5SS	ENSMUST00000159893.8	novel	0.55	6	5	6	5	y	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.25	1	3	1	3	n	0.41	7	10	7	10	y	0.00	0	9	0	9	n	0.33	3	6	3	6	y	0.00	0	3	0	3	n	0.50	5	5	5	5	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.14	1	6	1	6	n	ENSMUSG00000039233.13	Tbce	chr13	protein_coding	tubulin-specific chaperone E
novel_NIR_4868	chr13	14306060	14307021	+	14303850	14307021	A5SS	ENSMUST00000129488.8	novel	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.00	0	18	0	18	n	0.00	0	12	0	12	n	0.00	0	22	0	22	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.18	2	9	2	9	y	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	ENSMUSG00000039219.19	Arid4b	chr13	protein_coding	AT rich interactive domain 4B (RBP1-like)
novel_NIR_4869	chr13	14329720;14331856	14331726;14332359	+	14329720	14332359	cassetteExon	ENSMUST00000129488.8	novel	0.00	0.0	13	0;0	13	n	0.00	0.0	3	0;0	3	n	0.00	0.0	15	0;0	15	n	0.00	0.0	12	0;0	12	n	0.00	0.0	13	0;0	13	n	0.11	0.5	4	0;1	4	n	0.00	0.0	10	0;0	10	n	0.00	0.0	4	0;0	4	n	0.00	0.0	3	0;0	3	n	0.00	0.0	12	0;0	12	n	0.09	1.0	10	1;1	10	n	0.15	2.5	14	2;3	14	y	ENSMUSG00000039219.19	Arid4b	chr13	protein_coding	AT rich interactive domain 4B (RBP1-like)
novel_NIR_4870	chr13	14366686	14367958	+	14366686	14367951	A3SS	ENSMUST00000151151.2	novel	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.14	1	6	1	6	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.67	4	2	4	2	y	0.00	0	5	0	5	n	0.43	3	4	3	4	y	ENSMUSG00000039219.19	Arid4b	chr13	protein_coding	AT rich interactive domain 4B (RBP1-like)
novel_NIR_4871	chr13	14367840	14367951	+	14366686	14367951	A5SS	ENSMUST00000151151.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	ENSMUSG00000039219.19	Arid4b	chr13	protein_coding	AT rich interactive domain 4B (RBP1-like)
novel_NIR_4872	chr13	14786189	14787565	-	14786189	14787447	A5SS	ENSMUST00000221699.2	novel	0.14	1	6	1	6	n	1.00	2	0	2	0	y	0.50	1	1	1	1	n	0.50	2	2	2	2	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	3	0	3	0	y	ENSMUSG00000015672.5	Mrpl32	chr13	protein_coding	mitochondrial ribosomal protein L32
novel_NIR_4873	chr13	14786189	14787565	-	14786189	14787493	A5SS	ENSMUST00000015816.5	novel	0.25	1	3	1	3	n	0.50	2	2	2	2	y	1.00	1	0	1	0	n	0.40	2	3	2	3	y	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.60	3	2	3	2	y	ENSMUSG00000015672.5	Mrpl32	chr13	protein_coding	mitochondrial ribosomal protein L32
novel_NIR_4874	chr13	16183538	16186785	+	16186675	16186785	5pMXE	ENSMUST00000042603.14	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000041324.15	Inhba	chr13	protein_coding	inhibin beta-A
novel_NIR_4875	chr13	17858866	17859294	-	17858433	17859294	A3SS	ENSMUST00000221138.2	novel	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.22	2	7	2	7	y	0.00	0	4	0	4	n	0.00	0	26	0	26	n	0.00	0	3	0	3	n	0.09	1	10	1	10	n	0.06	1	17	1	17	n	0.00	0	17	0	17	n	0.00	0	8	0	8	n	ENSMUSG00000055137.8	Sugct	chr13	protein_coding	succinyl-CoA glutarate-CoA transferase
novel_NIR_4876	chr13	17859370	17861905	-	17859370	17869889	A5SS	ENSMUST00000221138.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000055137.8	Sugct	chr13	protein_coding	succinyl-CoA glutarate-CoA transferase
novel_NIR_4877	chr13	18071687	18117881	-	18071687	18118324	A5SS	ENSMUST00000223147.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000008859.9	Rala	chr13	protein_coding	v-ral simian leukemia viral oncogene A (ras related)
novel_NIR_4878	chr13	18929509	18932897	+	18929509	18932260	A3SS	ENSMUST00000222269.2	novel	0.83	5	1	5	1	y	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.33	1	2	1	2	n	ENSMUSG00000041236.9	Vps41	chr13	protein_coding	VPS41 HOPS complex subunit
novel_NIR_4879	chr13	21374140	21374273	+	21374140	21374267	A3SS	ENSMUST00000223065.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000021326.14	Trim27	chr13	protein_coding	tripartite motif-containing 27
novel_NIR_4880	chr13	21374294	21374763	+	21374140	21374763	A5SS	ENSMUST00000139287.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021326.14	Trim27	chr13	protein_coding	tripartite motif-containing 27
novel_NIR_4881	chr13	21475281	21497818	+	21496514	21497818	5pMXE	ENSMUST00000004453.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000004341.9	Gpx6	chr13	protein_coding	glutathione peroxidase 6
novel_NIR_4882	chr13	21547345	21547750	+	21547042	21547750	A5SS	ENSMUST00000225545.2	novel	1.00	4	0	4	0	y	0.75	3	1	3	1	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.22	2	7	2	7	y	0.40	2	3	2	3	y	0.33	2	4	2	4	y	0.75	6	2	6	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.67	2	1	2	1	y	ENSMUSG00000036721.15	Zscan12	chr13	protein_coding	zinc finger and SCAN domain containing 12
novel_NIR_4883	chr13	21547345	21547750	+	21547345;21547540	21547509;21547750	ES	ENSMUST00000053293.14	novel	1.00	4	0.0	4	0;0	y	1.00	3	0.0	3	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	0.80	2	0.5	2	0;1	y	0.67	2	1.0	2	0;2	y	1.00	6	0.0	6	0;0	y	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	1.00	2	0.0	2	0;0	y	ENSMUSG00000036721.15	Zscan12	chr13	protein_coding	zinc finger and SCAN domain containing 12
novel_NIR_4884	chr13	21572762	21578132	-	21572876	21578132	A3SS	ENSMUST00000070785.16	novel	0.00	0	33	0	33	n	0.05	2	36	2	36	n	0.02	1	47	1	47	n	0.08	4	49	4	49	n	0.03	2	59	2	59	n	0.02	1	41	1	41	n	0.00	0	61	0	61	n	0.25	14	42	14	42	y	0.02	1	48	1	48	n	0.06	3	48	3	48	n	0.00	0	56	0	56	n	0.00	0	36	0	36	n	ENSMUSG00000021327.20	Zkscan3	chr13	protein_coding	zinc finger with KRAB and SCAN domains 3
novel_NIR_4885	chr13	21572762	21578132	-	21577744	21578132	3pMXE	ENSMUST00000224820.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00	0	3	0	3	n	1.00	14	0	14	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000021327.20	Zkscan3	chr13	protein_coding	zinc finger with KRAB and SCAN domains 3
novel_NIR_4886	chr13	21572762	21578132	-	21577965	21578132	3pMXE	ENSMUST00000116433.2	novel	-	-	-	-	-	-	0.40	2	3	2	3	y	0.50	1	1	1	1	n	0.67	4	2	4	2	y	0.29	2	5	2	5	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.93	14	1	14	1	y	0.20	1	4	1	4	n	0.50	3	3	3	3	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021327.20	Zkscan3	chr13	protein_coding	zinc finger with KRAB and SCAN domains 3
novel_NIR_4887	chr13	21575571	21578132	-	21577744	21578132	A3SS&ES	ENSMUST00000145631.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000021327.20	Zkscan3	chr13	protein_coding	zinc finger with KRAB and SCAN domains 3
novel_NIR_4888	chr13	21575571	21578132	-	21577965	21578132	3pMXE	ENSMUST00000116433.2	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021327.20	Zkscan3	chr13	protein_coding	zinc finger with KRAB and SCAN domains 3
novel_NIR_4889	chr13	21577744	21577827	-	21577744	21578132	A5SS	ENSMUST00000145631.9	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	5	0	5	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	2	0	2	0	y	ENSMUSG00000021327.20	Zkscan3	chr13	protein_coding	zinc finger with KRAB and SCAN domains 3
novel_NIR_4890	chr13	21579076	21580609	-	21579076	21580357	A5SS	ENSMUST00000224820.2	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.75	3	1	3	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021327.20	Zkscan3	chr13	protein_coding	zinc finger with KRAB and SCAN domains 3
novel_NIR_4891	chr13	21579076	21580609	-	21579076	21586842	A5SS	ENSMUST00000223831.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021327.20	Zkscan3	chr13	protein_coding	zinc finger with KRAB and SCAN domains 3
novel_NIR_4892	chr13	21585792	21586358	-	21585792	21586222	A5SS	ENSMUST00000151467.3	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.20	1	4	1	4	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.67	2	1	2	1	y	-	-	-	-	-	-	ENSMUSG00000021327.20	Zkscan3	chr13	protein_coding	zinc finger with KRAB and SCAN domains 3
novel_NIR_4893	chr13	21628363	21628426	+	21628363	21629092	A3SS	ENSMUST00000122926.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000085788.2	4930470G03Rik	chr13	lncRNA	RIKEN cDNA 4930470G03 gene
novel_NIR_4894	chr13	21689402	21690678	-	21689402	21690390	A5SS	ENSMUST00000224437.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000082396.5	Zfp389	chr13	transcribed_processed_pseudogene	zinc finger protein 389
novel_NIR_4895	chr13	23891049	23892017	-	23891049	23894610	A5SS	ENSMUST00000091707.13	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000006611.16	Hfe	chr13	protein_coding	homeostatic iron regulator
novel_NIR_4896	chr13	23893013	23894610	-	23890119	23894610	A3SS	ENSMUST00000006787.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000006611.16	Hfe	chr13	protein_coding	homeostatic iron regulator
novel_NIR_4897	chr13	23893013	23894610	-	23891049	23894610	A3SS	ENSMUST00000091707.13	novel	0.50	1	1	1	1	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.60	3	2	3	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.80	4	1	4	1	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000006611.16	Hfe	chr13	protein_coding	homeostatic iron regulator
novel_NIR_4898	chr13	23894495	23894610	-	23890119	23894610	A3SS	ENSMUST00000006787.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000006611.16	Hfe	chr13	protein_coding	homeostatic iron regulator
novel_NIR_4899	chr13	23894495	23894610	-	23891049	23894610	A3SS	ENSMUST00000091707.13	novel	0.00	0	1	0	1	n	0.33	1	2	1	2	n	1.00	4	0	4	0	y	0.50	2	2	2	2	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.40	2	3	2	3	y	ENSMUSG00000006611.16	Hfe	chr13	protein_coding	homeostatic iron regulator
novel_NIR_4900	chr13	23991030	23991118	+	23991030	23991102	A3SS	ENSMUST00000141717.8	novel	0.00	0	85	0	85	n	0.00	0	46	0	46	n	0.09	12	119	12	119	n	0.07	8	104	8	104	n	0.08	12	143	12	143	n	0.03	2	72	2	72	n	0.08	10	114	10	114	n	0.08	5	60	5	60	n	0.16	17	90	17	90	y	0.12	18	132	18	132	n	0.08	7	86	7	86	n	0.05	8	139	8	139	n	ENSMUSG00000036110.15	Slc17a2	chr13	protein_coding	solute carrier family 17 (sodium phosphate), member 2
novel_NIR_4901	chr13	23993385	23994701	+	23991075	23994701	A5SS	ENSMUST00000099697.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036110.15	Slc17a2	chr13	protein_coding	solute carrier family 17 (sodium phosphate), member 2
novel_NIR_4902	chr13	24023648	24026390	+	24023648	24029320	A3SS	ENSMUST00000110422.3	novel	0.11	1	8	1	8	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.33	2	4	2	4	y	0.00	0	6	0	6	n	0.45	5	6	5	6	y	0.00	0	5	0	5	n	0.00	0	7	0	7	n	ENSMUSG00000036083.16	Slc17a3	chr13	protein_coding	solute carrier family 17 (sodium phosphate), member 3
novel_NIR_4903	chr13	24023648	24026417	+	24023648	24029320	A3SS	ENSMUST00000110422.3	novel	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.15	2	11	2	11	y	0.25	2	6	2	6	y	0.50	4	4	4	4	y	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.33	3	6	3	6	y	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.22	2	7	2	7	y	ENSMUSG00000036083.16	Slc17a3	chr13	protein_coding	solute carrier family 17 (sodium phosphate), member 3
novel_NIR_4904	chr13	24030948	24032696	+	24030948	24036331	A3SS	ENSMUST00000039721.14	novel	0.08	8	90	8	90	n	0.19	16	68	16	68	y	0.46	70	83	70	83	y	0.17	18	91	18	91	y	0.14	18	111	18	111	n	0.25	24	72	24	72	y	0.17	16	80	16	80	y	0.20	20	81	20	81	y	0.27	29	77	29	77	y	0.21	32	121	32	121	y	0.25	32	94	32	94	y	0.24	29	93	29	93	y	ENSMUSG00000036083.16	Slc17a3	chr13	protein_coding	solute carrier family 17 (sodium phosphate), member 3
novel_NIR_4905	chr13	24053720	24056542	+	24052047	24056542	A5SS	ENSMUST00000130211.8	novel	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.25	7	21	7	21	y	0.00	0	9	0	9	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.00	0	23	0	23	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.00	0	26	0	26	n	0.00	0	21	0	21	n	0.00	0	27	0	27	n	ENSMUSG00000021335.14	Slc17a1	chr13	protein_coding	solute carrier family 17 (sodium phosphate), member 1
novel_NIR_4906	chr13	24053720	24056542	+	24054334	24056542	5pMXE	ENSMUST00000110413.8	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.78	7	2	7	2	y	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000021335.14	Slc17a1	chr13	protein_coding	solute carrier family 17 (sodium phosphate), member 1
novel_NIR_4907	chr13	24053720	24056542	+	24054426	24056542	5pMXE	ENSMUST00000006785.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	7	0	7	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000021335.14	Slc17a1	chr13	protein_coding	solute carrier family 17 (sodium phosphate), member 1
novel_NIR_4908	chr13	24062826	24064562	+	24062826;24064469	24064337;24064562	ES	ENSMUST00000110413.8	novel	0.13	4	26.0	4	29;23	n	0.04	1	24.0	1	20;28	n	0.00	0	67.5	0	62;73	n	0.07	2	27.5	2	25;30	n	0.00	0	45.5	0	35;56	n	0.00	0	22.5	0	15;30	n	0.13	6	40.0	6	41;39	n	0.00	0	21.5	0	18;25	n	0.15	5	27.5	5	32;23	y	0.07	3	40.5	3	33;48	n	0.12	4	29.5	4	20;39	n	0.19	6	25.5	6	23;28	y	ENSMUSG00000021335.14	Slc17a1	chr13	protein_coding	solute carrier family 17 (sodium phosphate), member 1
novel_NIR_4909	chr13	24086013	24086798	-	24086013	24086954	A5SS	ENSMUST00000225797.2	novel	0.17	3	15	3	15	y	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	19	0	19	n	0.07	1	14	1	14	n	0.00	0	28	0	28	n	0.00	0	13	0	13	n	0.00	0	22	0	22	n	0.00	0	40	0	40	n	0.00	0	31	0	31	n	0.00	0	18	0	18	n	ENSMUSG00000021336.18	Slc17a4	chr13	protein_coding	solute carrier family 17 (sodium phosphate), member 4
novel_NIR_4910	chr13	24088781	24089518	-	24088781	24089226	A5SS&ES	ENSMUST00000225763.2	novel	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	1	0	1	n	0.06	1	17	1	17	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.19	3	13	3	13	y	0.00	0	16	0	16	n	0.00	0	18	0	18	n	0.00	0	24	0	24	n	0.00	0	16	0	16	n	0.00	0	18	0	18	n	ENSMUSG00000021336.18	Slc17a4	chr13	protein_coding	solute carrier family 17 (sodium phosphate), member 4
novel_NIR_4911	chr13	24088781	24089518	-	24088781	24089400	A5SS	ENSMUST00000225797.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021336.18	Slc17a4	chr13	protein_coding	solute carrier family 17 (sodium phosphate), member 4
novel_NIR_4912	chr13	24197443	24208306	-	24197443;24206619	24206479;24208306	ES	ENSMUST00000072889.12	novel	0.04	1	27.0	1	15;39	n	0.04	1	27.5	1	25;30	n	0.00	0	26.5	0	21;32	n	0.00	0	31.0	0	29;33	n	0.05	1	19.5	1	24;15	n	0.00	0	8.0	0	6;10	n	0.28	7	18.0	7	16;20	y	0.00	0	18.0	0	22;14	n	0.10	4	35.0	4	32;38	n	0.11	4	32.5	4	34;31	n	0.09	4	43.0	4	32;54	n	0.09	2	20.5	2	21;20	n	ENSMUSG00000021338.18	Carmil1	chr13	protein_coding	capping protein regulator and myosin 1 linker 1
novel_NIR_4913	chr13	24204309	24206479	-	24203693	24206479	A3SS	ENSMUST00000151566.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	ENSMUSG00000021338.18	Carmil1	chr13	protein_coding	capping protein regulator and myosin 1 linker 1
novel_NIR_4914	chr13	24204309	24206479	-	24204054	24206479	A3SS	ENSMUST00000125901.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000021338.18	Carmil1	chr13	protein_coding	capping protein regulator and myosin 1 linker 1
novel_NIR_4915	chr13	24460537	24512440	-	24460537	24464272	5pMXE	ENSMUST00000140042.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021338.18	Carmil1	chr13	protein_coding	capping protein regulator and myosin 1 linker 1
novel_NIR_4916	chr13	24460537	24512440	-	24460537	24464544	5pMXE	ENSMUST00000072889.12	novel	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.08	1	11	1	11	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.36	4	7	4	7	y	0.00	0	12	0	12	n	0.00	0	11	0	11	n	ENSMUSG00000021338.18	Carmil1	chr13	protein_coding	capping protein regulator and myosin 1 linker 1
novel_NIR_4917	chr13	24460537	24512635	-	24460537	24464272	5pMXE	ENSMUST00000140042.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021338.18	Carmil1	chr13	protein_coding	capping protein regulator and myosin 1 linker 1
novel_NIR_4918	chr13	24460537	24512635	-	24460537	24464544	5pMXE	ENSMUST00000072889.12	novel	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.08	1	11	1	11	n	0.29	2	5	2	5	y	-	-	-	-	-	-	0.57	4	3	4	3	y	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	11	0	11	n	ENSMUSG00000021338.18	Carmil1	chr13	protein_coding	capping protein regulator and myosin 1 linker 1
novel_NIR_4919	chr13	24460537	24512933	-	24460537	24464272	5pMXE	ENSMUST00000140042.8	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	6	0	6	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	ENSMUSG00000021338.18	Carmil1	chr13	protein_coding	capping protein regulator and myosin 1 linker 1
novel_NIR_4920	chr13	24460537	24512933	-	24460537	24464544	5pMXE	ENSMUST00000072889.12	novel	0.19	3	13	3	13	y	0.00	0	8	0	8	n	0.25	1	3	1	3	n	0.15	2	11	2	11	y	0.00	0	5	0	5	n	1.00	2	0	2	0	y	0.40	2	3	2	3	y	0.50	1	1	1	1	n	0.09	1	10	1	10	n	0.46	6	7	6	7	y	0.20	3	12	3	12	y	0.08	1	11	1	11	n	ENSMUSG00000021338.18	Carmil1	chr13	protein_coding	capping protein regulator and myosin 1 linker 1
novel_NIR_4921	chr13	24508807	24512042	-	24508807	24512440	A5SS	ENSMUST00000239334.2	novel	0.00	0	16	0	16	n	0.06	1	17	1	17	n	0.10	3	28	3	28	n	0.00	0	27	0	27	n	0.00	0	16	0	16	n	0.00	0	1	0	1	n	0.14	2	12	2	12	n	0.33	2	4	2	4	y	0.03	1	28	1	28	n	0.07	3	41	3	41	n	0.03	1	29	1	29	n	0.00	0	29	0	29	n	ENSMUSG00000118631.2	Gm53019	chr13	lncRNA	predicted gene, 53019
novel_NIR_4922	chr13	24511471	24521148	+	24511471	24514278	A3SS&ES	ENSMUST00000050859.13	novel	1.00	1	0	1	0	n	0.14	1	6	1	6	n	0.86	6	1	6	1	y	0.78	7	2	7	2	y	0.92	11	1	11	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.75	3	1	3	1	y	1.00	3	0	3	0	y	1.00	6	0	6	0	y	0.91	10	1	10	1	y	ENSMUSG00000016756.18	Cmah	chr13	protein_coding	cytidine monophospho-N-acetylneuraminic acid hydroxylase
novel_NIR_4923	chr13	24511471	24521148	+	24511471	24579182	A3SS	ENSMUST00000224953.2	novel	0.08	1	12	1	12	n	0.20	1	4	1	4	n	0.21	6	22	6	22	y	0.47	7	8	7	8	y	0.32	11	23	11	23	y	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.14	2	12	2	12	n	0.19	3	13	3	13	y	0.11	3	24	3	24	n	0.40	6	9	6	9	y	0.37	10	17	10	17	y	ENSMUSG00000016756.18	Cmah	chr13	protein_coding	cytidine monophospho-N-acetylneuraminic acid hydroxylase
novel_NIR_4924	chr13	24511471	24576843	+	24511471	24514278	A3SS&ES	ENSMUST00000050859.13	novel	1.00	1	0	1	0	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.67	2	1	2	1	y	ENSMUSG00000016756.18	Cmah	chr13	protein_coding	cytidine monophospho-N-acetylneuraminic acid hydroxylase
novel_NIR_4925	chr13	24511471	24579259	+	24511471	24514278	A3SS&ES	ENSMUST00000050859.13	novel	1.00	2	0	2	0	y	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.50	1	1	1	1	n	1.00	2	0	2	0	y	0.50	2	2	2	2	y	1.00	3	0	3	0	y	0.88	7	1	7	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.75	3	1	3	1	y	ENSMUSG00000016756.18	Cmah	chr13	protein_coding	cytidine monophospho-N-acetylneuraminic acid hydroxylase
novel_NIR_4926	chr13	24511471	24579259	+	24511471	24579182	A3SS	ENSMUST00000224953.2	novel	0.14	2	12	2	12	n	0.00	0	4	0	4	n	0.00	0	22	0	22	n	0.20	2	8	2	8	y	0.04	1	23	1	23	n	0.17	2	10	2	10	y	0.17	2	10	2	10	y	0.20	3	12	3	12	y	0.35	7	13	7	13	y	0.04	1	24	1	24	n	0.00	0	9	0	9	n	0.15	3	17	3	17	y	ENSMUSG00000016756.18	Cmah	chr13	protein_coding	cytidine monophospho-N-acetylneuraminic acid hydroxylase
novel_NIR_4927	chr13	24511471	24600884	+	24511471	24579182	A3SS&ES	ENSMUST00000224819.2	novel	0.20	3	12	3	12	y	0.33	2	4	2	4	n	0.27	8	22	8	22	y	0.43	6	8	6	8	n	0.15	4	23	4	23	y	0.17	2	10	2	10	y	0.29	4	10	4	10	y	0.14	2	12	2	12	n	0.00	0	13	0	13	n	0.04	1	24	1	24	n	0.31	4	9	4	9	y	0.06	1	17	1	17	n	ENSMUSG00000016756.18	Cmah	chr13	protein_coding	cytidine monophospho-N-acetylneuraminic acid hydroxylase
novel_NIR_4928	chr13	24511471	24600884	+	24511471;24579470	24579182;24600884	ES	ENSMUST00000224953.2	novel	0.17	3	15.0	3	12;18	y	0.20	2	8.0	2	4;12	y	0.19	8	34.5	8	22;47	y	0.24	6	18.5	6	8;29	y	0.11	4	31.5	4	23;40	n	0.11	2	15.5	2	10;21	n	0.18	4	18.0	4	10;26	y	0.12	2	15.0	2	12;18	n	0.00	0	15.0	0	13;17	n	0.04	1	26.0	1	24;28	n	0.24	4	13.0	4	9;17	y	0.04	1	22.5	1	17;28	n	ENSMUSG00000016756.18	Cmah	chr13	protein_coding	cytidine monophospho-N-acetylneuraminic acid hydroxylase
novel_NIR_4929	chr13	24511471	24600884	+	24599133	24600884	5pMXE	ENSMUST00000224657.2	novel	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	8	0	8	0	y	1.00	6	0	6	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	1	0	1	0	n	ENSMUSG00000016756.18	Cmah	chr13	protein_coding	cytidine monophospho-N-acetylneuraminic acid hydroxylase
novel_NIR_4930	chr13	24511471	24601204	+	24511471	24514278	A3SS&ES	ENSMUST00000050859.13	novel	-	-	-	-	-	-	0.00	0	6	0	6	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000016756.18	Cmah	chr13	protein_coding	cytidine monophospho-N-acetylneuraminic acid hydroxylase
novel_NIR_4931	chr13	24511471	24601204	+	24579470	24601204	5pMXE	ENSMUST00000131691.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000016756.18	Cmah	chr13	protein_coding	cytidine monophospho-N-acetylneuraminic acid hydroxylase
novel_NIR_4932	chr13	24511471	24601207	+	24601056	24601207	5pMXE	ENSMUST00000144621.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000016756.18	Cmah	chr13	protein_coding	cytidine monophospho-N-acetylneuraminic acid hydroxylase
novel_NIR_4933	chr13	24511471;24600993	24600884;24601204	+	24511471;24579470	24579182;24601204	MXE	ENSMUST00000224819.2	novel	0.20	1.5	6.0	3;0	12;0	n	0.50	2.0	2.0	2;2	4;0	y	0.24	4.0	12.5	8;0	22;3	n	0.50	4.0	4.0	6;2	8;0	y	0.13	2.0	13.0	4;0	23;3	n	0.17	1.0	5.0	2;0	10;0	n	0.27	2.0	5.5	4;0	10;1	n	0.19	1.5	6.5	2;1	12;1	n	0.13	1.0	6.5	0;2	13;0	n	0.04	0.5	12.0	1;0	24;0	n	0.31	2.0	4.5	4;0	9;0	n	0.05	0.5	9.5	1;0	17;2	n	ENSMUSG00000016756.18	Cmah	chr13	protein_coding	cytidine monophospho-N-acetylneuraminic acid hydroxylase
novel_NIR_4934	chr13	24514439	24579259	+	24514439	24579182	A3SS	ENSMUST00000050859.13	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000016756.18	Cmah	chr13	protein_coding	cytidine monophospho-N-acetylneuraminic acid hydroxylase
novel_NIR_4935	chr13	24520934	24521276	-	24520928	24521276	A3SS	ENSMUST00000148981.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000084788.3	Gm11342	chr13	lncRNA	predicted gene 11342
novel_NIR_4936	chr13	24520934	24521276	-	24520934	24555314	A5SS	ENSMUST00000224879.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000084788.3	Gm11342	chr13	lncRNA	predicted gene 11342
novel_NIR_4937	chr13	24521193	24521276	-	24520928	24521276	A3SS	ENSMUST00000148981.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000084788.3	Gm11342	chr13	lncRNA	predicted gene 11342
novel_NIR_4938	chr13	24579470	24587061	+	24579470	24600884	A3SS	ENSMUST00000224953.2	novel	0.00	0	18	0	18	n	0.00	0	12	0	12	n	0.02	1	47	1	47	n	0.15	5	29	5	29	y	0.00	0	40	0	40	n	0.00	0	21	0	21	n	0.00	0	26	0	26	n	0.00	0	18	0	18	n	0.00	0	17	0	17	n	0.00	0	28	0	28	n	0.06	1	17	1	17	n	0.07	2	28	2	28	n	ENSMUSG00000016756.18	Cmah	chr13	protein_coding	cytidine monophospho-N-acetylneuraminic acid hydroxylase
novel_NIR_4939	chr13	24579470	24587061	+	24579470	24601204	A3SS	ENSMUST00000224819.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.25	1	3	1	3	n	1.00	5	0	5	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	2	2	2	2	y	ENSMUSG00000016756.18	Cmah	chr13	protein_coding	cytidine monophospho-N-acetylneuraminic acid hydroxylase
novel_NIR_4940	chr13	24579470	24594174	+	24579470	24601204	A3SS	ENSMUST00000224819.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000016756.18	Cmah	chr13	protein_coding	cytidine monophospho-N-acetylneuraminic acid hydroxylase
novel_NIR_4941	chr13	24600993	24601204	+	24579470	24601204	A5SS	ENSMUST00000131691.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	1.00	2	0	2	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000016756.18	Cmah	chr13	protein_coding	cytidine monophospho-N-acetylneuraminic acid hydroxylase
novel_NIR_4942	chr13	24600993	24601204	+	24579470	24601204	A5SS	ENSMUST00000224819.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	n	0.00	0	3	0	3	n	1.00	2	0	2	0	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000016756.18	Cmah	chr13	protein_coding	cytidine monophospho-N-acetylneuraminic acid hydroxylase
novel_NIR_4943	chr13	24614661	24619102	+	24614661	24619590	A3SS	ENSMUST00000142882.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000016756.18	Cmah	chr13	protein_coding	cytidine monophospho-N-acetylneuraminic acid hydroxylase
novel_NIR_4944	chr13	24652615	24653754	+	24652626	24653754	A5SS	ENSMUST00000050859.13	novel	0.13	7	48	7	48	n	0.21	9	33	9	33	y	0.12	9	65	9	65	n	0.16	14	75	14	75	y	0.23	24	80	24	80	y	0.00	0	41	0	41	n	0.14	8	51	8	51	n	0.08	4	46	4	46	n	0.02	1	60	1	60	n	0.15	14	77	14	77	y	0.12	7	51	7	51	n	0.10	8	76	8	76	n	ENSMUSG00000016756.18	Cmah	chr13	protein_coding	cytidine monophospho-N-acetylneuraminic acid hydroxylase
novel_NIR_4945	chr13	24730970	24853943	+	24685670	24853943	A5SS	ENSMUST00000238974.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000036006.21	Ripor2	chr13	protein_coding	RHO family interacting cell polarization regulator 2
novel_NIR_4946	chr13	24730970	24853943	+	24766328	24853943	5pMXE	ENSMUST00000110383.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000036006.21	Ripor2	chr13	protein_coding	RHO family interacting cell polarization regulator 2
novel_NIR_4947	chr13	24730970	24853943	+	24798730	24853943	5pMXE	ENSMUST00000134370.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000036006.21	Ripor2	chr13	protein_coding	RHO family interacting cell polarization regulator 2
novel_NIR_4948	chr13	24730970	24853943	+	24822919	24853943	5pMXE	ENSMUST00000110384.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000036006.21	Ripor2	chr13	protein_coding	RHO family interacting cell polarization regulator 2
novel_NIR_4949	chr13	24731117	24853943	+	24685670	24853943	A5SS	ENSMUST00000238974.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000036006.21	Ripor2	chr13	protein_coding	RHO family interacting cell polarization regulator 2
novel_NIR_4950	chr13	24731117	24853943	+	24766328	24853943	5pMXE	ENSMUST00000110383.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000036006.21	Ripor2	chr13	protein_coding	RHO family interacting cell polarization regulator 2
novel_NIR_4951	chr13	24731117	24853943	+	24798730	24853943	5pMXE	ENSMUST00000134370.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000036006.21	Ripor2	chr13	protein_coding	RHO family interacting cell polarization regulator 2
novel_NIR_4952	chr13	24731117	24853943	+	24822919	24853943	5pMXE	ENSMUST00000110384.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000036006.21	Ripor2	chr13	protein_coding	RHO family interacting cell polarization regulator 2
novel_NIR_4953	chr13	24985250	24988765	+	24986143	24988765	5pMXE	ENSMUST00000155575.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000019132.12	BC005537	chr13	protein_coding	cDNA sequence BC005537
novel_NIR_4954	chr13	25004882;25015331	25015260;25015462	-	25004882	25015462	cassetteExon	ENSMUST00000224839.2	novel	-	-	-	-	-	-	0.71	2.5	1	3;2	1	y	0.00	0.0	1	0;0	1	n	0.00	0.0	1	0;0	1	n	0.00	0.0	3	0;0	3	n	1.00	1.0	0	0;2	0	n	0.00	0.0	2	0;0	2	n	-	-	-	-	-	-	0.00	0.0	2	0;0	2	n	0.33	1.0	2	0;2	2	n	0.50	2.0	2	0;4	2	n	0.50	1.0	1	0;2	1	n	ENSMUSG00000006717.8	Acot13	chr13	protein_coding	acyl-CoA thioesterase 13
novel_NIR_4955	chr13	25015331	25015462	-	25004882	25015462	A3SS	ENSMUST00000224839.2	novel	-	-	-	-	-	-	0.67	2	1	2	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.67	4	2	4	2	y	0.67	2	1	2	1	y	ENSMUSG00000006717.8	Acot13	chr13	protein_coding	acyl-CoA thioesterase 13
novel_NIR_4956	chr13	25016078	25016631	+	25016078	25016672	A3SS	ENSMUST00000130788.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035958.4	Tdp2	chr13	protein_coding	tyrosyl-DNA phosphodiesterase 2
novel_NIR_4957	chr13	25016078	25016631	+	25016078	25020838	A3SS	ENSMUST00000225138.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000035958.4	Tdp2	chr13	protein_coding	tyrosyl-DNA phosphodiesterase 2
novel_NIR_4958	chr13	25020149	25020838	+	25016078	25020838	A5SS	ENSMUST00000225138.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000035958.4	Tdp2	chr13	protein_coding	tyrosyl-DNA phosphodiesterase 2
novel_NIR_4959	chr13	25020149	25020838	+	25016809	25020838	A5SS	ENSMUST00000130788.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035958.4	Tdp2	chr13	protein_coding	tyrosyl-DNA phosphodiesterase 2
novel_NIR_4960	chr13	25063642	25064753	+	25063727	25064753	A5SS	ENSMUST00000141572.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000006711.16	D130043K22Rik	chr13	protein_coding	RIKEN cDNA D130043K22 gene
novel_NIR_4961	chr13	25063642	25064753	+	25064608	25064753	5pMXE	ENSMUST00000169411.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000006711.16	D130043K22Rik	chr13	protein_coding	RIKEN cDNA D130043K22 gene
novel_NIR_4962	chr13	25126982	25127382	+	25127232	25127382	5pMXE	ENSMUST00000021773.13	novel	0.19	6	26	6	26	y	0.44	7	9	7	9	y	0.05	2	37	2	37	n	0.34	21	40	21	40	y	0.19	13	57	13	57	y	0.00	0	21	0	21	n	0.45	17	21	17	21	y	0.20	5	20	5	20	y	0.32	12	26	12	26	y	0.39	28	44	28	44	y	0.40	12	18	12	18	y	0.27	18	48	18	48	y	ENSMUSG00000021340.14	Gpld1	chr13	protein_coding	glycosylphosphatidylinositol specific phospholipase D1
novel_NIR_4963	chr13	25136915	25140035	+	25139907	25140035	5pMXE	ENSMUST00000128315.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000021340.14	Gpld1	chr13	protein_coding	glycosylphosphatidylinositol specific phospholipase D1
novel_NIR_4964	chr13	29541566	29658512	-	29541566;29628053	29627991;29658512	ES	ENSMUST00000140278.8	novel	0.00	0	12.5	0	10;15	n	0.00	0	12.0	0	10;14	n	0.00	0	12.0	0	12;12	n	0.15	2	11.5	2	7;16	y	0.00	0	26.0	0	22;30	n	0.00	0	3.0	0	3;3	n	0.00	0	26.0	0	25;27	n	0.00	0	10.5	0	11;10	n	0.00	0	12.5	0	13;12	n	0.00	0	23.0	0	22;24	n	0.00	0	14.0	0	14;14	n	0.00	0	21.0	0	18;24	n	ENSMUSG00000006191.18	Cdkal1	chr13	protein_coding	CDK5 regulatory subunit associated protein 1-like 1
novel_NIR_4965	chr13	29809707	29815907	-	29809707	29809861	A5SS&ES	ENSMUST00000137225.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000006191.18	Cdkal1	chr13	protein_coding	CDK5 regulatory subunit associated protein 1-like 1
novel_NIR_4966	chr13	29817019	29875582	-	29809937	29875582	A3SS	ENSMUST00000137225.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000006191.18	Cdkal1	chr13	protein_coding	CDK5 regulatory subunit associated protein 1-like 1
novel_NIR_4967	chr13	30021053	30030211	-	29961284	30030211	A3SS	ENSMUST00000140278.8	novel	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	20	0	20	n	0.00	0	16	0	16	n	0.25	2	6	2	6	y	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	30	0	30	n	ENSMUSG00000006191.18	Cdkal1	chr13	protein_coding	CDK5 regulatory subunit associated protein 1-like 1
novel_NIR_4968	chr13	30021053	30030211	-	29989185	30030211	A3SS	ENSMUST00000091674.12	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000006191.18	Cdkal1	chr13	protein_coding	CDK5 regulatory subunit associated protein 1-like 1
novel_NIR_4969	chr13	30021053	30030211	-	30021053;30022685	30022498;30030211	ES	ENSMUST00000129231.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1.0	0	0;2	n	0.00	0	1.5	0	0;3	n	0.00	0	1.5	0	3;0	n	0.67	2	1.0	2	0;2	y	0.00	0	0.5	0	0;1	n	-	-	-	-	-	-	0.00	0	1.0	0	1;1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2.5	0	3;2	n	ENSMUSG00000006191.18	Cdkal1	chr13	protein_coding	CDK5 regulatory subunit associated protein 1-like 1
novel_NIR_4970	chr13	30520572	30521496	+	30520572	30521573	A3SS	ENSMUST00000223201.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000049115.16	Agtr1a	chr13	protein_coding	angiotensin II receptor, type 1a
novel_NIR_4971	chr13	30520572	30526099	+	30520572	30521573	A3SS&ES	ENSMUST00000223201.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000049115.16	Agtr1a	chr13	protein_coding	angiotensin II receptor, type 1a
novel_NIR_4972	chr13	30520750	30528920	+	30521674	30528920	A5SS&ES	ENSMUST00000223201.2	novel	0.00	0	3	0	3	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	2	1	2	1	y	1.00	5	0	5	0	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000049115.16	Agtr1a	chr13	protein_coding	angiotensin II receptor, type 1a
novel_NIR_4973	chr13	30529003	30544616	+	30529003	30529626	3pMXE	ENSMUST00000143181.8	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.33	2	4	2	4	y	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000049115.16	Agtr1a	chr13	protein_coding	angiotensin II receptor, type 1a
novel_NIR_4974	chr13	30529003	30544616	+	30529003	30549104	A3SS	ENSMUST00000222503.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000049115.16	Agtr1a	chr13	protein_coding	angiotensin II receptor, type 1a
novel_NIR_4975	chr13	30529003	30544616	+	30529003	30564905	A3SS	ENSMUST00000222370.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000049115.16	Agtr1a	chr13	protein_coding	angiotensin II receptor, type 1a
novel_NIR_4976	chr13	30529003	30554369	+	30529003	30529626	3pMXE	ENSMUST00000143181.8	novel	0.00	0	1	0	1	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000049115.16	Agtr1a	chr13	protein_coding	angiotensin II receptor, type 1a
novel_NIR_4977	chr13	30529003	30554369	+	30529003	30549104	A3SS&ES	ENSMUST00000222503.2	novel	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000049115.16	Agtr1a	chr13	protein_coding	angiotensin II receptor, type 1a
novel_NIR_4978	chr13	30529003	30554369	+	30529003	30564905	A3SS	ENSMUST00000222370.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000049115.16	Agtr1a	chr13	protein_coding	angiotensin II receptor, type 1a
novel_NIR_4979	chr13	30529380	30564885	+	30529754	30564885	5pMXE	ENSMUST00000221743.2	novel	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000049115.16	Agtr1a	chr13	protein_coding	angiotensin II receptor, type 1a
novel_NIR_4980	chr13	30529380	30564885	+	30549218	30564885	A5SS&ES	ENSMUST00000222503.2	novel	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000049115.16	Agtr1a	chr13	protein_coding	angiotensin II receptor, type 1a
novel_NIR_4981	chr13	30530544	30564885	+	30529754	30564885	A5SS	ENSMUST00000221743.2	novel	0.00	0	1	0	1	n	0.83	5	1	5	1	y	0.80	4	1	4	1	y	1.00	1	0	1	0	n	0.25	2	6	2	6	y	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.71	5	2	5	2	y	0.20	1	4	1	4	n	0.78	7	2	7	2	y	ENSMUSG00000049115.16	Agtr1a	chr13	protein_coding	angiotensin II receptor, type 1a
novel_NIR_4982	chr13	30530544	30564885	+	30549218	30564885	A5SS&ES	ENSMUST00000222503.2	novel	0.00	0	1	0	1	n	1.00	5	0	5	0	y	0.80	4	1	4	1	y	1.00	1	0	1	0	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.71	5	2	5	2	y	1.00	1	0	1	0	n	0.64	7	4	7	4	y	ENSMUSG00000049115.16	Agtr1a	chr13	protein_coding	angiotensin II receptor, type 1a
novel_NIR_4983	chr13	30544704	30564885	+	30529754	30564885	A5SS	ENSMUST00000221743.2	novel	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000049115.16	Agtr1a	chr13	protein_coding	angiotensin II receptor, type 1a
novel_NIR_4984	chr13	30544704	30564885	+	30549218	30564885	A5SS&ES	ENSMUST00000222503.2	novel	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000049115.16	Agtr1a	chr13	protein_coding	angiotensin II receptor, type 1a
novel_NIR_4985	chr13	30559849	30564885	+	30529754	30564885	A5SS	ENSMUST00000221743.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000049115.16	Agtr1a	chr13	protein_coding	angiotensin II receptor, type 1a
novel_NIR_4986	chr13	30559849	30564885	+	30549218	30564885	A5SS	ENSMUST00000222503.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000049115.16	Agtr1a	chr13	protein_coding	angiotensin II receptor, type 1a
novel_NIR_4987	chr13	31130406	31157979	-	31124753	31157979	A3SS	ENSMUST00000021785.8	novel	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.13	2	13	2	13	n	0.18	2	9	2	9	y	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.17	1	5	1	5	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	ENSMUSG00000021357.15	Exoc2	chr13	protein_coding	exocyst complex component 2
novel_NIR_4988	chr13	31130406	31157979	-	31130406	31134163	5pMXE	ENSMUST00000102946.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021357.15	Exoc2	chr13	protein_coding	exocyst complex component 2
novel_NIR_4989	chr13	33072992	33122507	-	33072992	33082097	5pMXE	ENSMUST00000221019.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	12	0	12	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000079049.10	Serpinb1c	chr13	protein_coding	serine (or cysteine) peptidase inhibitor, clade B, member 1c
novel_NIR_4990	chr13	33192868	33194751	+	33192868	33194670	A3SS	ENSMUST00000063191.14	novel	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.03	1	32	1	32	n	0.00	0	18	0	18	n	0.00	0	14	0	14	n	0.00	0	15	0	15	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	18	0	18	n	0.20	2	8	2	8	y	0.07	1	14	1	14	n	ENSMUSG00000045827.11	Serpinb9	chr13	protein_coding	serine (or cysteine) peptidase inhibitor, clade B, member 9
novel_NIR_4991	chr13	33275443	33275639	+	33275443	33275635	A3SS	ENSMUST00000016951.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000051029.9	Serpinb1b	chr13	protein_coding	serine (or cysteine) peptidase inhibitor, clade B, member 1b
novel_NIR_4992	chr13	34115629	34119518	-	34115629	34119552	A5SS	ENSMUST00000171252.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000060147.16	Serpinb6a	chr13	protein_coding	serine (or cysteine) peptidase inhibitor, clade B, member 6a
novel_NIR_4993	chr13	34115629	34119518	-	34115629	34119556	A5SS	ENSMUST00000167163.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.75	3	1	3	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000060147.16	Serpinb6a	chr13	protein_coding	serine (or cysteine) peptidase inhibitor, clade B, member 6a
novel_NIR_4994	chr13	34115629	34119518	-	34115629	34119602	A5SS	ENSMUST00000170991.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000060147.16	Serpinb6a	chr13	protein_coding	serine (or cysteine) peptidase inhibitor, clade B, member 6a
novel_NIR_4995	chr13	34115629	34119518	-	34115629	34119610	A5SS	ENSMUST00000017188.14	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.75	3	1	3	1	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000060147.16	Serpinb6a	chr13	protein_coding	serine (or cysteine) peptidase inhibitor, clade B, member 6a
novel_NIR_4996	chr13	34115629	34119518	-	34115629	34119750	A5SS	ENSMUST00000168350.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000060147.16	Serpinb6a	chr13	protein_coding	serine (or cysteine) peptidase inhibitor, clade B, member 6a
novel_NIR_4997	chr13	34115629	34119518	-	34115629	34138881	A5SS	ENSMUST00000167237.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000060147.16	Serpinb6a	chr13	protein_coding	serine (or cysteine) peptidase inhibitor, clade B, member 6a
novel_NIR_4998	chr13	34115629	34119518	-	34115629	34180226	A5SS	ENSMUST00000076532.14	novel	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	20	0	20	n	0.00	0	6	0	6	n	0.30	3	7	3	7	y	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	ENSMUSG00000060147.16	Serpinb6a	chr13	protein_coding	serine (or cysteine) peptidase inhibitor, clade B, member 6a
novel_NIR_4999	chr13	34115629	34119518	-	34115629	34186449	A5SS	ENSMUST00000166354.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000060147.16	Serpinb6a	chr13	protein_coding	serine (or cysteine) peptidase inhibitor, clade B, member 6a
novel_NIR_5000	chr13	34194684	34197237	+	34194684	34199109	A3SS	ENSMUST00000171137.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021408.16	Ripk1	chr13	protein_coding	receptor (TNFRSF)-interacting serine-threonine kinase 1
novel_NIR_5001	chr13	34221863	34228407	+	34221861	34228407	A5SS	ENSMUST00000222658.2	novel	0.00	0	1	0	1	n	0.20	1	4	1	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.25	2	6	2	6	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000038286.12	Bphl	chr13	protein_coding	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)
novel_NIR_5002	chr13	34228123	34228407	+	34221861	34228407	A5SS	ENSMUST00000222658.2	novel	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000038286.12	Bphl	chr13	protein_coding	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)
novel_NIR_5003	chr13	34228510	34230773	+	34228510	34234264	A3SS	ENSMUST00000222658.2	novel	0.00	0	3	0	3	n	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	17	0	17	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.39	7	11	7	11	y	0.00	0	13	0	13	n	0.00	0	15	0	15	n	ENSMUSG00000038286.12	Bphl	chr13	protein_coding	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)
novel_NIR_5004	chr13	34228510	34230798	+	34228510	34234264	A3SS	ENSMUST00000222658.2	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.12	1	7	1	7	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	17	0	17	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.24	4	13	4	13	y	0.00	0	15	0	15	n	ENSMUSG00000038286.12	Bphl	chr13	protein_coding	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)
novel_NIR_5005	chr13	34244548	34246936	+	34244548	34257659	A3SS	ENSMUST00000223251.2	novel	0.25	1	3	1	3	n	0.10	1	9	1	9	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.08	1	11	1	11	n	0.33	2	4	2	4	y	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.13	2	13	2	13	n	0.13	2	13	2	13	n	0.00	0	7	0	7	n	ENSMUSG00000038286.12	Bphl	chr13	protein_coding	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)
novel_NIR_5006	chr13	34814445	34821231	-	34814445	34821137	A5SS	ENSMUST00000021847.15	novel	0.57	4	3	4	3	y	0.53	8	7	8	7	y	0.43	10	13	10	13	y	0.64	7	4	7	4	y	0.59	10	7	10	7	y	0.83	5	1	5	1	y	0.45	5	6	5	6	y	0.57	4	3	4	3	y	0.43	3	4	3	4	y	0.68	15	7	15	7	y	0.44	8	10	8	10	y	0.55	6	5	6	5	y	ENSMUSG00000021411.17	Pxdc1	chr13	protein_coding	PX domain containing 1
novel_NIR_5007	chr13	34814445	34822995	-	34814445	34821137	A5SS&ES	ENSMUST00000021847.15	novel	0.40	2	3	2	3	y	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.50	4	4	4	4	y	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.30	3	7	3	7	y	0.00	0	10	0	10	n	0.17	1	5	1	5	n	ENSMUSG00000021411.17	Pxdc1	chr13	protein_coding	PX domain containing 1
novel_NIR_5008	chr13	34823081	34828592	-	34823081	34832476	A5SS	ENSMUST00000152392.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021411.17	Pxdc1	chr13	protein_coding	PX domain containing 1
novel_NIR_5009	chr13	35083206	35083335	+	35083206	35083298	A3SS	ENSMUST00000220965.2	novel	0.00	0	1	0	1	n	0.00	0	7	0	7	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000021413.10	Prpf4b	chr13	protein_coding	pre-mRNA processing factor 4B
novel_NIR_5010	chr13	35085471	35085981	+	35085656	35085981	5pMXE	ENSMUST00000223228.2	novel	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.43	3	4	3	4	y	0.17	1	5	1	5	n	0.18	2	9	2	9	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	ENSMUSG00000021413.10	Prpf4b	chr13	protein_coding	pre-mRNA processing factor 4B
novel_NIR_5011	chr13	35085601	35085981	+	35085656	35085981	5pMXE	ENSMUST00000223228.2	novel	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.33	2	4	2	4	y	0.00	0	5	0	5	n	ENSMUSG00000021413.10	Prpf4b	chr13	protein_coding	pre-mRNA processing factor 4B
novel_NIR_5012	chr13	35085607	35085981	+	35085656	35085981	5pMXE	ENSMUST00000223228.2	novel	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.22	2	7	2	7	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	ENSMUSG00000021413.10	Prpf4b	chr13	protein_coding	pre-mRNA processing factor 4B
novel_NIR_5013	chr13	35087729	35088027	+	35087585	35088027	A5SS	ENSMUST00000221784.2	novel	0.00	0	8	0	8	n	0.00	0	22	0	22	n	0.07	1	13	1	13	n	0.00	0	13	0	13	n	0.00	0	15	0	15	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.25	2	6	2	6	y	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	ENSMUSG00000021413.10	Prpf4b	chr13	protein_coding	pre-mRNA processing factor 4B
novel_NIR_5014	chr13	35144482	35210992	-	35144482	35147737	5pMXE	ENSMUST00000021853.12	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021416.12	Eci3	chr13	protein_coding	enoyl-Coenzyme A delta isomerase 3
novel_NIR_5015	chr13	35172335	35173403	-	35172335	35173513	A5SS	ENSMUST00000164421.8	novel	0.17	1	5	1	5	n	0.42	5	7	5	7	y	0.06	1	15	1	15	n	0.30	3	7	3	7	y	0.19	3	13	3	13	y	0.00	0	4	0	4	n	0.11	3	24	3	24	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.46	12	14	12	14	y	0.31	5	11	5	11	y	0.00	0	12	0	12	n	ENSMUSG00000021417.16	Eci2	chr13	protein_coding	enoyl-Coenzyme A delta isomerase 2
novel_NIR_5016	chr13	35172335	35173504	-	35172335	35173513	A5SS	ENSMUST00000164421.8	novel	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.22	2	7	2	7	y	0.00	0	13	0	13	n	0.20	1	4	1	4	n	0.00	0	24	0	24	n	0.08	1	11	1	11	n	0.11	1	8	1	8	n	0.07	1	14	1	14	n	0.15	2	11	2	11	y	0.14	2	12	2	12	n	ENSMUSG00000021417.16	Eci2	chr13	protein_coding	enoyl-Coenzyme A delta isomerase 2
novel_NIR_5017	chr13	35177311	35210992	-	35177203	35210992	A3SS	ENSMUST00000163280.8	novel	0.10	2	19	2	19	n	0.18	2	9	2	9	y	0.34	15	29	15	29	y	0.12	3	23	3	23	n	0.12	4	29	4	29	n	0.53	8	7	8	7	y	0.29	18	45	18	45	y	0.25	5	15	5	15	y	0.27	3	8	3	8	y	0.42	13	18	13	18	y	0.21	6	23	6	23	y	0.09	1	10	1	10	n	ENSMUSG00000021417.16	Eci2	chr13	protein_coding	enoyl-Coenzyme A delta isomerase 2
novel_NIR_5018	chr13	35177311	35210992	-	35177213	35210992	A3SS	ENSMUST00000170538.8	novel	0.06	2	30	2	30	n	0.06	2	31	2	31	n	0.22	15	53	15	53	y	0.07	3	38	3	38	n	0.06	4	65	4	65	n	0.32	8	17	8	17	y	0.19	18	75	18	75	y	0.12	5	38	5	38	n	0.20	3	12	3	12	y	0.18	13	61	13	61	y	0.15	6	35	6	35	y	0.03	1	37	1	37	n	ENSMUSG00000021417.16	Eci2	chr13	protein_coding	enoyl-Coenzyme A delta isomerase 2
novel_NIR_5019	chr13	35177311	35210992	-	35177311	35177813	5pMXE	ENSMUST00000171258.8	novel	0.04	2	48	2	48	n	0.06	2	31	2	31	n	0.11	15	122	15	122	n	0.05	3	56	3	56	n	0.06	4	63	4	63	n	0.14	8	51	8	51	n	0.20	18	70	18	70	y	0.11	5	41	5	41	n	0.07	3	41	3	41	n	0.14	13	79	13	79	n	0.11	6	50	6	50	n	0.02	1	41	1	41	n	ENSMUSG00000021417.16	Eci2	chr13	protein_coding	enoyl-Coenzyme A delta isomerase 2
novel_NIR_5020	chr13	35177311	35210992	-	35177311	35177997	5pMXE	ENSMUST00000167036.8	novel	0.06	2	29	2	29	n	0.05	2	36	2	36	n	0.16	15	76	15	76	y	0.08	3	34	3	34	n	0.08	4	47	4	47	n	0.16	8	42	8	42	y	0.23	18	59	18	59	y	0.15	5	29	5	29	y	0.09	3	29	3	29	n	0.24	13	41	13	41	y	0.26	6	17	6	17	y	0.03	1	37	1	37	n	ENSMUSG00000021417.16	Eci2	chr13	protein_coding	enoyl-Coenzyme A delta isomerase 2
novel_NIR_5021	chr13	35177311	35210992	-	35191982	35210992	3pMXE	ENSMUST00000220713.2	novel	0.40	2	3	2	3	y	0.67	2	1	2	1	y	0.47	15	17	15	17	y	0.43	3	4	3	4	y	0.36	4	7	4	7	y	0.35	8	15	8	15	y	0.69	18	8	18	8	y	0.42	5	7	5	7	y	0.50	3	3	3	3	y	0.42	13	18	13	18	y	0.46	6	7	6	7	y	0.17	1	5	1	5	n	ENSMUSG00000021417.16	Eci2	chr13	protein_coding	enoyl-Coenzyme A delta isomerase 2
novel_NIR_5022	chr13	3588343	3598891	+	3588343	3598514	A3SS&ES	ENSMUST00000221348.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021218.11	Gdi2	chr13	protein_coding	guanosine diphosphate (GDP) dissociation inhibitor 2
novel_NIR_5023	chr13	3588343	3598891	+	3588343	3600989	A3SS	ENSMUST00000059515.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021218.11	Gdi2	chr13	protein_coding	guanosine diphosphate (GDP) dissociation inhibitor 2
novel_NIR_5024	chr13	3588343	3604417	+	3588343	3600989	A3SS&ES	ENSMUST00000059515.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021218.11	Gdi2	chr13	protein_coding	guanosine diphosphate (GDP) dissociation inhibitor 2
novel_NIR_5025	chr13	3598970	3614996	+	3598970	3604412	3pMXE	ENSMUST00000221575.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000021218.11	Gdi2	chr13	protein_coding	guanosine diphosphate (GDP) dissociation inhibitor 2
novel_NIR_5026	chr13	36042231	36055561	+	36042231;36047392	36047182;36055561	ES	ENSMUST00000075220.14	novel	0.00	0	5.5	0	3;8	n	0.00	0	3.5	0	3;4	n	0.00	0	12.5	0	10;15	n	0.00	0	13.0	0	9;17	n	0.00	0	12.0	0	10;14	n	0.00	0	3.5	0	2;5	n	0.00	0	9.5	0	13;6	n	0.00	0	3.5	0	2;5	n	0.00	0	3.5	0	2;5	n	0.00	0	11.5	0	10;13	n	0.00	0	5.0	0	6;4	n	0.27	2	5.5	2	3;8	y	ENSMUSG00000059288.15	Cdyl	chr13	protein_coding	chromodomain protein, Y chromosome-like
novel_NIR_5027	chr13	36088546	36095529	-	36088546	36090187	5pMXE	ENSMUST00000171686.9	novel	0.33	2	4	2	4	y	0.18	3	14	3	14	y	0.00	0	9	0	9	n	0.35	8	15	8	15	y	0.17	6	29	6	29	y	0.00	0	3	0	3	n	0.30	8	19	8	19	y	0.09	1	10	1	10	n	0.29	9	22	9	22	y	0.24	6	19	6	19	y	0.33	8	16	8	16	y	0.67	43	21	43	21	y	ENSMUSG00000021418.16	Rpp40	chr13	protein_coding	ribonuclease P 40 subunit
novel_NIR_5028	chr13	3610091	3611961	+	3610091	3610253	3pMXE	ENSMUST00000221875.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	10	0	10	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021218.11	Gdi2	chr13	protein_coding	guanosine diphosphate (GDP) dissociation inhibitor 2
novel_NIR_5029	chr13	36142979	36148926	+	36142979	36152141	A3SS	ENSMUST00000225537.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000050423.12	Ppp1r3g	chr13	protein_coding	protein phosphatase 1, regulatory subunit 3G
novel_NIR_5030	chr13	36301924	36388492	+	36301776	36388492	A5SS	ENSMUST00000223796.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000021420.14	Fars2	chr13	protein_coding	phenylalanine-tRNA synthetase 2 (mitochondrial)
novel_NIR_5031	chr13	36301924	36388492	+	36314016	36388492	5pMXE	ENSMUST00000224241.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021420.14	Fars2	chr13	protein_coding	phenylalanine-tRNA synthetase 2 (mitochondrial)
novel_NIR_5032	chr13	36301924	36388492	+	36332427	36388492	A5SS&ES	ENSMUST00000224611.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000021420.14	Fars2	chr13	protein_coding	phenylalanine-tRNA synthetase 2 (mitochondrial)
novel_NIR_5033	chr13	3632193	3638298	-	3632193	3634500	5pMXE	ENSMUST00000222909.2	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.17	2	10	2	10	y	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	ENSMUSG00000033799.11	Tasor2	chr13	protein_coding	transcription activation suppressor family member 2
novel_NIR_5034	chr13	3632193	3638298	-	3632193;3635373	3634500;3638298	ES	ENSMUST00000096069.5	novel	0.00	0	2.0	0	3;1	n	0.00	0	1.5	0	2;1	n	0.16	2	10.5	2	10;11	y	0.00	0	5.5	0	5;6	n	0.00	0	11.0	0	10;12	n	0.00	0	8.5	0	11;6	n	0.00	0	5.5	0	5;6	n	0.00	0	7.0	0	8;6	n	0.00	0	12.0	0	14;10	n	0.00	0	10.5	0	17;4	n	0.00	0	4.5	0	7;2	n	0.00	0	10.5	0	10;11	n	ENSMUSG00000033799.11	Tasor2	chr13	protein_coding	transcription activation suppressor family member 2
novel_NIR_5035	chr13	36391729	36416105	+	36301988	36416105	A5SS	ENSMUST00000099582.4	novel	0.00	0	2	0	2	n	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000021420.14	Fars2	chr13	protein_coding	phenylalanine-tRNA synthetase 2 (mitochondrial)
novel_NIR_5036	chr13	36535880	36594062	+	36530740	36594062	A5SS	ENSMUST00000224357.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021420.14	Fars2	chr13	protein_coding	phenylalanine-tRNA synthetase 2 (mitochondrial)
novel_NIR_5037	chr13	36907521	36910022	+	36907521	36909754	A3SS	ENSMUST00000225048.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021420.14	Fars2	chr13	protein_coding	phenylalanine-tRNA synthetase 2 (mitochondrial)
novel_NIR_5038	chr13	36914225	36915109	-	36914225	36914496	5pMXE	ENSMUST00000122286.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000039114.17	Nrn1	chr13	protein_coding	neuritin 1
novel_NIR_5039	chr13	36914225	36915109	-	36914225	36914517	5pMXE	ENSMUST00000224323.2	novel	0.50	1	1	1	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000039114.17	Nrn1	chr13	protein_coding	neuritin 1
novel_NIR_5040	chr13	36914225	36915109	-	36914225	36915618	A5SS	ENSMUST00000223611.2	novel	0.25	1	3	1	3	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.20	1	4	1	4	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.25	1	3	1	3	n	ENSMUSG00000039114.17	Nrn1	chr13	protein_coding	neuritin 1
novel_NIR_5041	chr13	36914652	36915618	-	36914225	36915618	A3SS	ENSMUST00000223611.2	novel	0.00	0	3	0	3	n	0.60	3	2	3	2	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000039114.17	Nrn1	chr13	protein_coding	neuritin 1
novel_NIR_5042	chr13	37818027;37820932	37820811;37824333	-	37818027	37824333	cassetteExon	ENSMUST00000225532.2	novel	-	-	-	-	-	-	0.56	2.5	2	2;3	2	y	1.00	3.5	0	3;4	0	y	1.00	1.5	0	2;1	0	n	1.00	1.0	0	1;1	0	n	0.64	7.0	4	5;9	4	y	0.25	1.0	3	0;2	3	n	0.75	3.0	1	1;5	1	n	1.00	2.0	0	0;4	0	n	0.67	2.0	1	0;4	1	n	1.00	2.5	0	2;3	0	y	1.00	3.0	0	0;6	0	n	ENSMUSG00000114355.2	Gm40916	chr13	lncRNA	predicted gene, 40916
novel_NIR_5043	chr13	37820932	37824333	-	37818027	37824333	A3SS	ENSMUST00000225532.2	novel	-	-	-	-	-	-	0.60	3	2	3	2	n	1.00	4	0	4	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.69	9	4	9	4	n	0.40	2	3	2	3	y	0.83	5	1	5	1	n	1.00	4	0	4	0	y	0.80	4	1	4	1	y	1.00	3	0	3	0	n	1.00	6	0	6	0	y	ENSMUSG00000114355.2	Gm40916	chr13	lncRNA	predicted gene, 40916
novel_NIR_5044	chr13	37828447	37842724	-	37841593	37842724	3pMXE	ENSMUST00000225734.2	novel	-	-	-	-	-	-	0.00	0	7	0	7	n	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.33	2	4	2	4	y	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.33	1	2	1	2	n	ENSMUSG00000114828.2	AI463229	chr13	lncRNA	expressed sequence AI463229
novel_NIR_5045	chr13	37841338	37842724	-	37841593	37842724	A3SS	ENSMUST00000225734.2	novel	1.00	5	0	5	0	y	0.56	9	7	9	7	y	0.83	20	4	20	4	y	1.00	5	0	5	0	y	0.50	5	5	5	5	y	0.73	16	6	16	6	y	0.80	16	4	16	4	y	0.62	8	5	8	5	y	0.67	2	1	2	1	y	0.69	11	5	11	5	y	0.55	6	5	6	5	y	0.80	8	2	8	2	y	ENSMUSG00000114828.2	AI463229	chr13	lncRNA	expressed sequence AI463229
novel_NIR_5046	chr13	37841341	37842724	-	37841593	37842724	A3SS	ENSMUST00000225734.2	novel	1.00	4	0	4	0	y	0.42	5	7	5	7	y	0.43	3	4	3	4	y	1.00	2	0	2	0	y	0.44	4	5	4	5	y	0.25	2	6	2	6	y	0.43	3	4	3	4	y	0.55	6	5	6	5	y	0.50	1	1	1	1	n	0.17	1	5	1	5	n	0.29	2	5	2	5	y	0.00	0	2	0	2	n	ENSMUSG00000114828.2	AI463229	chr13	lncRNA	expressed sequence AI463229
novel_NIR_5047	chr13	37841593	37842670	-	37841593	37842724	A5SS	ENSMUST00000225734.2	novel	1.00	4	0	4	0	y	0.22	2	7	2	7	y	0.64	7	4	7	4	y	-	-	-	-	-	-	0.50	5	5	5	5	y	0.00	0	6	0	6	n	0.56	5	4	5	4	y	0.00	0	5	0	5	n	0.80	4	1	4	1	y	0.55	6	5	6	5	y	0.38	3	5	3	5	y	0.50	2	2	2	2	y	ENSMUSG00000114828.2	AI463229	chr13	lncRNA	expressed sequence AI463229
novel_NIR_5048	chr13	37842555	37842724	-	37841593	37842724	A3SS	ENSMUST00000225734.2	novel	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.33	3	6	3	6	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.67	2	1	2	1	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.60	3	2	3	2	y	ENSMUSG00000114828.2	AI463229	chr13	lncRNA	expressed sequence AI463229
novel_NIR_5049	chr13	37842746	37850353	-	37842746	37850428	A5SS	ENSMUST00000225734.2	novel	0.00	0	22	0	22	n	0.05	2	41	2	41	n	0.10	11	94	11	94	n	0.12	4	29	4	29	n	0.05	2	35	2	35	n	0.10	9	80	9	80	n	0.09	5	50	5	50	n	0.16	10	53	10	53	y	0.03	1	33	1	33	n	0.13	6	39	6	39	n	0.00	0	28	0	28	n	0.07	3	39	3	39	n	ENSMUSG00000114828.2	AI463229	chr13	lncRNA	expressed sequence AI463229
novel_NIR_5050	chr13	37842746	37850353	-	37842746	37850747	A5SS	ENSMUST00000224151.2	novel	0.00	0	8	0	8	n	0.29	2	5	2	5	y	0.58	11	8	11	8	y	0.24	4	13	4	13	y	0.13	2	13	2	13	n	0.56	9	7	9	7	y	0.24	5	16	5	16	y	0.67	10	5	10	5	y	0.33	1	2	1	2	n	0.50	6	6	6	6	y	0.00	0	8	0	8	n	0.25	3	9	3	9	y	ENSMUSG00000114828.2	AI463229	chr13	lncRNA	expressed sequence AI463229
novel_NIR_5051	chr13	37842746	37850353	-	37842746	37851474	A5SS	ENSMUST00000225013.2	novel	0.00	0	4	0	4	n	0.22	2	7	2	7	y	0.58	11	8	11	8	y	0.36	4	7	4	7	y	0.14	2	12	2	12	n	0.64	9	5	9	5	y	0.28	5	13	5	13	y	1.00	10	0	10	0	y	0.12	1	7	1	7	n	0.29	6	15	6	15	y	0.00	0	8	0	8	n	0.25	3	9	3	9	y	ENSMUSG00000114828.2	AI463229	chr13	lncRNA	expressed sequence AI463229
novel_NIR_5052	chr13	37850899	37851474	-	37842746	37851474	A3SS	ENSMUST00000225013.2	novel	0.00	0	4	0	4	n	0.22	2	7	2	7	y	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	ENSMUSG00000114828.2	AI463229	chr13	lncRNA	expressed sequence AI463229
novel_NIR_5053	chr13	38011217	38072847	+	37962533	38072847	A5SS	ENSMUST00000122842.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039087.18	Rreb1	chr13	protein_coding	ras responsive element binding protein 1
novel_NIR_5054	chr13	38011217	38072847	+	38010028	38072847	A5SS	ENSMUST00000138043.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000039087.18	Rreb1	chr13	protein_coding	ras responsive element binding protein 1
novel_NIR_5055	chr13	38011217	38072847	+	38010320	38072847	A5SS	ENSMUST00000110238.10	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.40	2	3	2	3	y	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	ENSMUSG00000039087.18	Rreb1	chr13	protein_coding	ras responsive element binding protein 1
novel_NIR_5056	chr13	38011217	38072847	+	38010949	38072847	A5SS	ENSMUST00000124373.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039087.18	Rreb1	chr13	protein_coding	ras responsive element binding protein 1
novel_NIR_5057	chr13	38011217	38072847	+	38010951	38072847	A5SS	ENSMUST00000149745.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.15	2	11	2	11	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	ENSMUSG00000039087.18	Rreb1	chr13	protein_coding	ras responsive element binding protein 1
novel_NIR_5058	chr13	38011217	38072847	+	38011707	38072847	5pMXE	ENSMUST00000110237.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039087.18	Rreb1	chr13	protein_coding	ras responsive element binding protein 1
novel_NIR_5059	chr13	38011217	38072847	+	38042069	38072847	5pMXE	ENSMUST00000138110.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039087.18	Rreb1	chr13	protein_coding	ras responsive element binding protein 1
novel_NIR_5060	chr13	38011217	38072847	+	38072656	38072847	5pMXE	ENSMUST00000124268.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039087.18	Rreb1	chr13	protein_coding	ras responsive element binding protein 1
novel_NIR_5061	chr13	38042069	38042961	+	38042069	38072847	A3SS	ENSMUST00000138110.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000039087.18	Rreb1	chr13	protein_coding	ras responsive element binding protein 1
novel_NIR_5062	chr13	38112288	38130833	+	38100571	38130833	A5SS	ENSMUST00000124373.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039087.18	Rreb1	chr13	protein_coding	ras responsive element binding protein 1
novel_NIR_5063	chr13	3815226	3815900	-	3812646	3815900	A3SS	ENSMUST00000223062.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000113259.2	Gm35190	chr13	lncRNA	predicted gene, 35190
novel_NIR_5064	chr13	3816068	3816178	-	3816068	3816663	A5SS	ENSMUST00000222335.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000113259.2	Gm35190	chr13	lncRNA	predicted gene, 35190
novel_NIR_5065	chr13	3816068	3816216	-	3816068	3816663	A5SS	ENSMUST00000222335.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000113259.2	Gm35190	chr13	lncRNA	predicted gene, 35190
novel_NIR_5066	chr13	38191984	38196368	-	38191984;38195394	38195324;38196368	ES	ENSMUST00000110233.8	novel	0.00	0	1.0	0	0;2	n	0.00	0	3.5	0	4;3	n	0.50	2	2.0	2	2;2	y	0.00	0	1.0	0	2;0	n	-	-	-	-	-	-	0.00	0	1.5	0	3;0	n	0.00	0	1.5	0	2;1	n	0.00	0	1.0	0	0;2	n	-	-	-	-	-	-	0.00	0	2.0	0	1;3	n	0.00	0	2.0	0	2;2	n	-	-	-	-	-	-	ENSMUSG00000044566.16	Cage1	chr13	protein_coding	cancer antigen 1
novel_NIR_5067	chr13	38236348	38236868	+	38236348	38236854	A3SS	ENSMUST00000021866.10	novel	0.00	0	16	0	16	n	0.21	3	11	3	11	y	0.07	1	13	1	13	n	0.00	0	14	0	14	n	0.05	1	19	1	19	n	0.00	0	7	0	7	n	0.06	1	16	1	16	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.11	1	8	1	8	n	0.00	0	14	0	14	n	ENSMUSG00000021428.10	Riok1	chr13	protein_coding	RIO kinase 1
novel_NIR_5068	chr13	38395117	38404664	+	38395117	38398581	A3SS&ES	ENSMUST00000223680.2	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.12	2	14	2	14	n	0.00	0	6	0	6	n	0.17	1	5	1	5	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.22	2	7	2	7	y	ENSMUSG00000021431.16	Snrnp48	chr13	protein_coding	small nuclear ribonucleoprotein 48 (U11/U12)
novel_NIR_5069	chr13	38398588	38400301	+	38400214	38400301	5pMXE	ENSMUST00000224192.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	ENSMUSG00000021431.16	Snrnp48	chr13	protein_coding	small nuclear ribonucleoprotein 48 (U11/U12)
novel_NIR_5070	chr13	38707454	38708806	-	38707454	38711651	A5SS	ENSMUST00000160653.2	novel	0.67	2	1	2	1	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.00	0	6	0	6	n	ENSMUSG00000038991.18	Txndc5	chr13	protein_coding	thioredoxin domain containing 5
novel_NIR_5071	chr13	38707454	38708806	-	38707454	38712528	A5SS	ENSMUST00000162075.8	novel	0.40	2	3	2	3	y	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.17	1	5	1	5	n	0.00	0	7	0	7	n	ENSMUSG00000038991.18	Txndc5	chr13	protein_coding	thioredoxin domain containing 5
novel_NIR_5072	chr13	38713938	38714283	+	38712234	38714283	A5SS	ENSMUST00000224471.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	3	0	3	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000114638.2	Gm31834	chr13	lncRNA	predicted gene, 31834
novel_NIR_5073	chr13	39121815	39123823	-	39121815	39123851	A5SS	ENSMUST00000021870.12	novel	0.00	0	22	0	22	n	0.00	0	18	0	18	n	0.00	0	85	0	85	n	0.03	1	28	1	28	n	0.06	3	47	3	47	n	0.08	4	49	4	49	n	0.10	5	43	5	43	n	0.02	1	41	1	41	n	0.03	1	30	1	30	n	0.22	4	14	4	14	y	0.10	2	18	2	18	n	0.03	1	28	1	28	n	ENSMUSG00000021432.16	Slc35b3	chr13	protein_coding	solute carrier family 35, member B3
novel_NIR_5074	chr13	39123948	39139797	-	39138206	39139797	A3SS&ES	ENSMUST00000224429.2	novel	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.15	2	11	2	11	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000021432.16	Slc35b3	chr13	protein_coding	solute carrier family 35, member B3
novel_NIR_5075	chr13	39127142;39135838	39135746;39138085	-	39127142	39138085	cassetteExon	ENSMUST00000225461.2	novel	0.08	0.5	6	0;1	6	n	0.09	0.5	5	0;1	5	n	0.24	3.5	11	4;3	11	y	0.07	0.5	7	0;1	7	n	0.07	1.0	14	0;2	14	n	0.33	2.0	4	0;4	4	n	0.11	1.5	12	0;3	12	n	0.12	1.5	11	1;2	11	n	0.00	0.0	14	0;0	14	n	0.07	1.0	14	0;2	14	n	0.00	0.0	6	0;0	6	n	0.16	1.5	8	1;2	8	n	ENSMUSG00000021432.16	Slc35b3	chr13	protein_coding	solute carrier family 35, member B3
novel_NIR_5076	chr13	39128630	39135746	-	39128630	39139797	A5SS	ENSMUST00000225568.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021432.16	Slc35b3	chr13	protein_coding	solute carrier family 35, member B3
novel_NIR_5077	chr13	39134710	39138085	-	39127142	39138085	A3SS	ENSMUST00000225461.2	novel	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.18	3	14	3	14	y	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	ENSMUSG00000021432.16	Slc35b3	chr13	protein_coding	solute carrier family 35, member B3
novel_NIR_5078	chr13	39135838	39138085	-	39127142	39138085	A3SS	ENSMUST00000225461.2	novel	0.14	1	6	1	6	n	0.17	1	5	1	5	n	0.21	3	11	3	11	n	0.12	1	7	1	7	n	0.12	2	14	2	14	n	0.50	4	4	4	4	y	0.20	3	12	3	12	y	0.15	2	11	2	11	n	0.00	0	14	0	14	n	0.12	2	14	2	14	n	0.00	0	6	0	6	n	0.20	2	8	2	8	n	ENSMUSG00000021432.16	Slc35b3	chr13	protein_coding	solute carrier family 35, member B3
novel_NIR_5079	chr13	39135838	39138085	-	39128630	39138085	A3SS	ENSMUST00000021870.12	novel	0.12	1	7	1	7	n	0.07	1	13	1	13	n	0.05	3	52	3	52	n	0.05	1	21	1	21	n	0.04	2	46	2	46	n	0.15	4	23	4	23	y	0.07	3	37	3	37	n	0.07	2	25	2	25	n	0.00	0	16	0	16	n	0.12	2	15	2	15	n	0.00	0	13	0	13	n	0.10	2	18	2	18	n	ENSMUSG00000021432.16	Slc35b3	chr13	protein_coding	solute carrier family 35, member B3
novel_NIR_5080	chr13	39139912	39144311	-	39139912	39144139	A5SS	ENSMUST00000225331.2	novel	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.25	2	6	2	6	y	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021432.16	Slc35b3	chr13	protein_coding	solute carrier family 35, member B3
novel_NIR_5081	chr13	39139912	39144311	-	39139912	39144386	A5SS	ENSMUST00000167513.3	novel	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.22	2	7	2	7	y	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000021432.16	Slc35b3	chr13	protein_coding	solute carrier family 35, member B3
novel_NIR_5082	chr13	39139912	39144311	-	39139912	39144589	A5SS	ENSMUST00000021870.12	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	14	0	14	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000021432.16	Slc35b3	chr13	protein_coding	solute carrier family 35, member B3
novel_NIR_5083	chr13	39149331	39149711	+	39148646	39149711	A5SS	ENSMUST00000181376.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.33	2	4	2	4	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000096932.3	5033403F01Rik	chr13	lncRNA	RIKEN cDNA 5033403F01 gene
novel_NIR_5084	chr13	39926358	39928121	-	39926358	39940376	A5SS	ENSMUST00000225267.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000114710.2	Gm40923	chr13	lncRNA	predicted gene, 40923
novel_NIR_5085	chr13	39926358	39928121	-	39926358	39944671	A5SS	ENSMUST00000224577.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000114710.2	Gm40923	chr13	lncRNA	predicted gene, 40923
novel_NIR_5086	chr13	4085193	4087916	+	4085315	4087916	5pMXE	ENSMUST00000210421.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000110055.2	Gm18857	chr13	unprocessed_pseudogene	predicted gene, 18857
novel_NIR_5087	chr13	4098866	4099032	+	4098866	4101207	A3SS	ENSMUST00000210421.2	novel	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	n	ENSMUSG00000110055.2	Gm18857	chr13	unprocessed_pseudogene	predicted gene, 18857
novel_NIR_5088	chr13	4098866;4099334	4099032;4101207	+	4098866	4101207	cassetteExon	ENSMUST00000210421.2	novel	0.00	0.0	1	0;0	1	n	1.00	1.0	0	2;0	0	n	-	-	-	-	-	-	0.20	0.5	2	0;1	2	n	0.33	0.5	1	0;1	1	n	0.00	0.0	1	0;0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.20	0.5	2	0;1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2.0	0	2;2	0	y	ENSMUSG00000110055.2	Gm18857	chr13	unprocessed_pseudogene	predicted gene, 18857
novel_NIR_5089	chr13	41350674	41350743	-	41350674	41373513	A5SS	ENSMUST00000117096.2	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.29	5	12	5	12	y	0.67	10	5	10	5	y	1.00	1	0	1	0	n	0.40	2	3	2	3	y	1.00	1	0	1	0	n	0.50	4	4	4	4	y	0.38	3	5	3	5	y	0.17	1	5	1	5	n	0.50	5	5	5	5	y	ENSMUSG00000021364.17	Elovl2	chr13	protein_coding	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2
novel_NIR_5090	chr13	41389899	41392357	+	41389899	41390446	A3SS&ES	ENSMUST00000224417.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	ENSMUSG00000114247.2	Gm32063	chr13	lncRNA	predicted gene, 32063
novel_NIR_5091	chr13	41391651	41392357	+	41391651	41392334	A3SS	ENSMUST00000224417.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.71	5	2	5	2	y	1.00	1	0	1	0	n	ENSMUSG00000114247.2	Gm32063	chr13	lncRNA	predicted gene, 32063
novel_NIR_5092	chr13	41392639	41394480	+	41392639;41393801	41393647;41394480	ES	ENSMUST00000224417.2	novel	0.00	0	0.5	0	0;1	n	0.33	1	2.0	1	1;3	n	1.00	1	0.0	1	0;0	n	0.00	0	2.5	0	2;3	n	0.00	0	2.5	0	2;3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2.0	0	1;3	n	0.00	0	3.0	0	2;4	n	0.33	3	6.0	3	5;7	y	0.00	0	5.0	0	3;7	n	0.00	0	2.5	0	0;5	n	ENSMUSG00000114247.2	Gm32063	chr13	lncRNA	predicted gene, 32063
novel_NIR_5093	chr13	41931099	41936625	-	41931099	41953974	A5SS	ENSMUST00000220949.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000058022.15	Adtrp	chr13	protein_coding	androgen dependent TFPI regulating protein
novel_NIR_5094	chr13	41931099	41936625	-	41931099	41964828	A5SS	ENSMUST00000220680.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.25	2	6	2	6	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000058022.15	Adtrp	chr13	protein_coding	androgen dependent TFPI regulating protein
novel_NIR_5095	chr13	41959213	41964828	-	41931099	41964828	A3SS	ENSMUST00000220680.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.25	2	6	2	6	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000058022.15	Adtrp	chr13	protein_coding	androgen dependent TFPI regulating protein
novel_NIR_5096	chr13	41959213	41967691	-	41964922	41967691	A3SS&ES	ENSMUST00000220680.2	novel	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.54	7	6	7	6	y	0.29	2	5	2	5	y	0.69	9	4	9	4	y	0.36	4	7	4	7	y	0.00	0	8	0	8	n	0.80	4	1	4	1	y	0.80	4	1	4	1	y	1.00	7	0	7	0	y	0.86	6	1	6	1	y	0.00	0	2	0	2	n	ENSMUSG00000058022.15	Adtrp	chr13	protein_coding	androgen dependent TFPI regulating protein
novel_NIR_5097	chr13	41965207	41967691	-	41964922	41967691	A3SS	ENSMUST00000220680.2	novel	0.60	3	2	3	2	y	-	-	-	-	-	-	0.74	17	6	17	6	y	0.00	0	5	0	5	n	0.43	3	4	3	4	y	0.46	6	7	6	7	y	0.38	5	8	5	8	y	0.91	10	1	10	1	y	0.50	1	1	1	1	n	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.67	4	2	4	2	y	ENSMUSG00000058022.15	Adtrp	chr13	protein_coding	androgen dependent TFPI regulating protein
novel_NIR_5098	chr13	41996565	41996696	+	41996565	42003081	A3SS	ENSMUST00000190864.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000099672.2	Gm28564	chr13	lncRNA	predicted gene 28564
novel_NIR_5099	chr13	42317010	42317693	+	42316960	42317693	A5SS	ENSMUST00000060148.6	novel	0.05	1	18	1	18	n	0.17	2	10	2	10	y	0.00	0	21	0	21	n	0.00	0	12	0	12	n	0.00	0	28	0	28	n	0.00	0	8	0	8	n	0.08	1	12	1	12	n	0.00	0	7	0	7	n	0.00	0	16	0	16	n	0.00	0	20	0	20	n	0.00	0	8	0	8	n	0.00	0	23	0	23	n	ENSMUSG00000021366.9	Hivep1	chr13	protein_coding	human immunodeficiency virus type I enhancer binding protein 1
novel_NIR_5100	chr13	43555709	43560308	+	43555323	43560308	A5SS	ENSMUST00000222754.2	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000063200.5	Nol7	chr13	protein_coding	nucleolar protein 7
novel_NIR_5101	chr13	43578602	43588290	-	43578690	43588290	A3SS	ENSMUST00000222239.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038546.10	Ranbp9	chr13	protein_coding	RAN binding protein 9
novel_NIR_5102	chr13	43583946	43586683	-	43583946	43615188	A5SS	ENSMUST00000220500.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038546.10	Ranbp9	chr13	protein_coding	RAN binding protein 9
novel_NIR_5103	chr13	43586800	43588290	-	43578690	43588290	A3SS	ENSMUST00000222239.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038546.10	Ranbp9	chr13	protein_coding	RAN binding protein 9
novel_NIR_5104	chr13	43615299	43633824	-	43615299	43632344	5pMXE	ENSMUST00000222651.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038546.10	Ranbp9	chr13	protein_coding	RAN binding protein 9
novel_NIR_5105	chr13	43615299	43633824	-	43615299	43632726	5pMXE	ENSMUST00000222023.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038546.10	Ranbp9	chr13	protein_coding	RAN binding protein 9
novel_NIR_5106	chr13	44606260	44608668	-	44594401	44608668	A3SS	ENSMUST00000183264.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000098107.2	Gm27007	chr13	lncRNA	predicted gene, 27007
novel_NIR_5107	chr13	44626250	44633608	-	44626250	44638158	A5SS	ENSMUST00000222236.2	novel	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000113010.2	Gm34084	chr13	lncRNA	predicted gene, 34084
novel_NIR_5108	chr13	4484473	4484969	+	4484473	4484727	A3SS	ENSMUST00000128695.2	novel	0.25	1	3	1	3	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.33	2	4	2	4	y	0.00	0	7	0	7	n	0.00	0	7	0	7	n	ENSMUSG00000021210.17	Akr1c6	chr13	protein_coding	aldo-keto reductase family 1, member C6
novel_NIR_5109	chr13	4484473	4486372	+	4484473	4484727	3pMXE	ENSMUST00000128695.2	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.78	21	6	21	6	y	-	-	-	-	-	-	0.83	24	5	24	5	y	0.93	53	4	53	4	y	0.00	0	7	0	7	n	0.00	0	7	0	7	n	ENSMUSG00000021210.17	Akr1c6	chr13	protein_coding	aldo-keto reductase family 1, member C6
novel_NIR_5110	chr13	4484473	4488489	+	4484473	4484727	3pMXE	ENSMUST00000128695.2	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	0.17	1	5	1	5	n	0.43	3	4	3	4	y	0.00	0	7	0	7	n	0.00	0	7	0	7	n	ENSMUSG00000021210.17	Akr1c6	chr13	protein_coding	aldo-keto reductase family 1, member C6
novel_NIR_5111	chr13	4504545	4507220	+	4504545	4507693	A3SS	ENSMUST00000223118.2	novel	-	-	-	-	-	-	1.00	65	0	65	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	100	0	100	0	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.85	35	6	35	6	y	ENSMUSG00000021210.17	Akr1c6	chr13	protein_coding	aldo-keto reductase family 1, member C6
novel_NIR_5112	chr13	45084627	45123522	-	45084627	45100345	5pMXE	ENSMUST00000222321.2	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000057531.15	Dtnbp1	chr13	protein_coding	dystrobrevin binding protein 1
novel_NIR_5113	chr13	45084627	45123522	-	45084733	45123522	A3SS&ES	ENSMUST00000110128.5	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000057531.15	Dtnbp1	chr13	protein_coding	dystrobrevin binding protein 1
novel_NIR_5114	chr13	45084627	45123529	-	45084627	45100345	5pMXE	ENSMUST00000222321.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000057531.15	Dtnbp1	chr13	protein_coding	dystrobrevin binding protein 1
novel_NIR_5115	chr13	45084627	45155393	-	45084627	45100345	5pMXE	ENSMUST00000222321.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000057531.15	Dtnbp1	chr13	protein_coding	dystrobrevin binding protein 1
novel_NIR_5116	chr13	45100604	45123522	-	45084733	45123522	A3SS	ENSMUST00000110128.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000057531.15	Dtnbp1	chr13	protein_coding	dystrobrevin binding protein 1
novel_NIR_5117	chr13	45105856	45106648	-	45101750	45106648	A3SS	ENSMUST00000223265.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000057531.15	Dtnbp1	chr13	protein_coding	dystrobrevin binding protein 1
novel_NIR_5118	chr13	45105856	45106648	-	45105859	45106648	A3SS	ENSMUST00000222805.2	novel	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	ENSMUSG00000057531.15	Dtnbp1	chr13	protein_coding	dystrobrevin binding protein 1
novel_NIR_5119	chr13	4557845	4558227	-	4557845	4558167	A5SS	ENSMUST00000080361.13	novel	0.13	50	330	50	330	n	0.11	24	200	24	200	n	0.00	0	23	0	23	n	0.08	25	299	25	299	n	0.08	31	358	31	358	n	0.07	2	27	2	27	n	0.13	60	406	60	406	n	0.06	5	76	5	76	n	0.12	42	301	42	301	n	0.16	73	380	73	380	y	0.14	57	341	57	341	n	0.20	64	250	64	250	y	ENSMUSG00000054757.15	Akr1c20	chr13	protein_coding	aldo-keto reductase family 1, member C20
novel_NIR_5120	chr13	45673651	45674328	+	45670558	45674328	A5SS	ENSMUST00000000260.13	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.00	0	13	0	13	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000000253.14	Gmpr	chr13	protein_coding	guanosine monophosphate reductase
novel_NIR_5121	chr13	46827145	46828988	+	46827145;46827868	46827729;46828988	ES	ENSMUST00000099547.4	novel	0.21	19	72.5	19	58;87	y	0.21	16	61.0	16	47;75	y	0.22	30	108.0	30	93;123	y	0.16	24	123.5	24	90;157	y	0.19	37	161.5	37	140;183	y	0.12	9	68.5	9	68;69	n	0.23	33	111.5	33	86;137	y	0.15	15	86.0	15	64;108	y	0.18	18	81.5	18	57;106	y	0.20	31	122.0	31	117;127	y	0.24	23	74.0	23	49;99	y	0.18	25	111.5	25	91;132	y	ENSMUSG00000069237.9	Fam8a1	chr13	protein_coding	family with sequence similarity 8, member A1
novel_NIR_5122	chr13	46870799	46890272	-	46870799	46880836	5pMXE	ENSMUST00000021803.10	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	18	0	18	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.23	3	10	3	10	y	0.00	0	3	0	3	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	ENSMUSG00000021374.11	Nup153	chr13	protein_coding	nucleoporin 153
novel_NIR_5123	chr13	46924867	46924982	-	46924845	46924982	A3SS	ENSMUST00000056978.8	novel	0.00	0	18	0	18	n	0.18	2	9	2	9	y	0.00	0	16	0	16	n	0.00	0	19	0	19	n	0.00	0	19	0	19	n	0.00	0	11	0	11	n	0.00	0	18	0	18	n	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.03	1	31	1	31	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	ENSMUSG00000021375.12	Kif13a	chr13	protein_coding	kinesin family member 13A
novel_NIR_5124	chr13	47195071	47196603	-	47195055	47196603	A3SS	ENSMUST00000136864.8	novel	0.10	2	18	2	18	n	0.00	0	10	0	10	n	0.00	0	18	0	18	n	0.14	5	31	5	31	n	0.03	1	29	1	29	n	0.07	1	13	1	13	n	0.04	1	23	1	23	n	0.00	0	26	0	26	n	0.00	0	17	0	17	n	0.07	2	26	2	26	n	0.00	0	17	0	17	n	0.15	3	17	3	17	y	ENSMUSG00000021376.12	Tpmt	chr13	protein_coding	thiopurine methyltransferase
novel_NIR_5125	chr13	47195071	47196603	-	47195071	47196580	A5SS	ENSMUST00000124948.2	novel	0.22	2	7	2	7	y	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.20	5	20	5	20	y	0.05	1	19	1	19	n	0.10	1	9	1	9	n	0.06	1	16	1	16	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.14	2	12	2	12	n	0.00	0	9	0	9	n	0.27	3	8	3	8	y	ENSMUSG00000021376.12	Tpmt	chr13	protein_coding	thiopurine methyltransferase
novel_NIR_5126	chr13	48630180	48651799	-	48644869	48651799	3pMXE	ENSMUST00000177530.8	novel	0.50	1	1	1	1	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.50	1	1	1	1	n	ENSMUSG00000050954.16	Zfp169	chr13	protein_coding	zinc finger protein 169
novel_NIR_5127	chr13	48630180	48651799	-	48644872	48651799	3pMXE	ENSMUST00000176949.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.33	1	2	1	2	n	ENSMUSG00000050954.16	Zfp169	chr13	protein_coding	zinc finger protein 169
novel_NIR_5128	chr13	48988771	49025258	-	48988771	49024144	5pMXE	ENSMUST00000035540.9	novel	0.29	2	5	2	5	y	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.04	1	22	1	22	n	0.00	0	7	0	7	n	0.13	2	13	2	13	n	0.14	1	6	1	6	n	0.20	2	8	2	8	y	0.28	5	13	5	13	y	0.00	0	6	0	6	n	0.12	2	14	2	14	n	ENSMUSG00000038025.9	Phf2	chr13	protein_coding	PHD finger protein 2
novel_NIR_5129	chr13	48988771	49025490	-	48988771	49024144	5pMXE	ENSMUST00000035540.9	novel	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.08	1	11	1	11	n	0.11	1	8	1	8	n	0.00	0	22	0	22	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.19	3	13	3	13	y	0.14	1	6	1	6	n	0.00	0	14	0	14	n	ENSMUSG00000038025.9	Phf2	chr13	protein_coding	PHD finger protein 2
novel_NIR_5130	chr13	49025157	49026328	+	49025157	49028710	A3SS	ENSMUST00000123212.2	novel	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000086889.2	Phf2os1	chr13	lncRNA	PHD finger protein 2, opposite strand 1
novel_NIR_5131	chr13	49341332	49344561	+	49341113	49344561	A5SS	ENSMUST00000120733.8	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000037966.16	Ninj1	chr13	protein_coding	ninjurin 1
novel_NIR_5132	chr13	49341332	49344561	+	49341332	49347212	A3SS	ENSMUST00000150555.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.25	2	6	2	6	y	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000037966.16	Ninj1	chr13	protein_coding	ninjurin 1
novel_NIR_5133	chr13	49347440	49347537	+	49347440	49348315	A3SS	ENSMUST00000131280.2	novel	0.00	0	11	0	11	n	0.00	0	17	0	17	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.30	6	14	6	14	y	1.00	1	0	1	0	n	0.00	0	10	0	10	n	0.17	1	5	1	5	n	0.10	1	9	1	9	n	0.07	1	13	1	13	n	0.12	1	7	1	7	n	0.00	0	11	0	11	n	ENSMUSG00000037966.16	Ninj1	chr13	protein_coding	ninjurin 1
novel_NIR_5134	chr13	49357265	49358668	-	49357464	49358668	3pMXE	ENSMUST00000222733.2	novel	0.00	0	42	0	42	n	0.00	0	49	0	49	n	0.00	0	49	0	49	n	0.00	0	37	0	37	n	0.00	0	46	0	46	n	0.00	0	18	0	18	n	0.15	7	41	7	41	y	0.00	0	15	0	15	n	0.00	0	31	0	31	n	0.05	2	36	2	36	n	0.00	0	37	0	37	n	0.00	0	46	0	46	n	ENSMUSG00000037960.12	Card19	chr13	protein_coding	caspase recruitment domain family, member 19
novel_NIR_5135	chr13	49529866	49531366	+	49528845	49531366	A5SS	ENSMUST00000048544.14	novel	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.35	7	13	7	13	y	0.00	0	8	0	8	n	0.14	2	12	2	12	n	0.00	0	3	0	3	n	0.38	3	5	3	5	y	0.09	2	21	2	21	n	0.00	0	5	0	5	n	0.10	2	18	2	18	n	ENSMUSG00000037933.17	Bicd2	chr13	protein_coding	BICD cargo adaptor 2
novel_NIR_5136	chr13	49836120	49840862	+	49835784	49840862	A5SS	ENSMUST00000172254.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000037851.14	Iars	chr13	protein_coding	isoleucine-tRNA synthetase
novel_NIR_5137	chr13	51806791	51809135	+	51806791	51810917	A3SS	ENSMUST00000154202.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000035139.15	Secisbp2	chr13	protein_coding	SECIS binding protein 2
novel_NIR_5138	chr13	51806791	51809135	+	51806791;51808671	51808422;51809135	ES	ENSMUST00000040117.15	novel	0.00	0	12.0	0	8;16	n	0.00	0	11.0	0	9;13	n	0.00	0	25.0	0	26;24	n	0.00	0	22.5	0	28;17	n	0.03	1	29.5	1	33;26	n	0.00	0	18.0	0	15;21	n	0.00	0	25.0	0	21;29	n	0.05	1	19.5	1	14;25	n	0.00	0	18.5	0	9;28	n	0.15	4	22.5	4	19;26	y	0.00	0	23.0	0	23;23	n	0.03	1	29.0	1	20;38	n	ENSMUSG00000035139.15	Secisbp2	chr13	protein_coding	SECIS binding protein 2
novel_NIR_5139	chr13	51806791	51809135	+	51806791;51808671	51808532;51809135	ES	ENSMUST00000127360.2	novel	0.00	0	8.0	0	0;16	n	0.00	0	7.5	0	2;13	n	0.00	0	12.5	0	1;24	n	0.00	0	8.5	0	0;17	n	0.07	1	14.0	1	2;26	n	0.00	0	10.5	0	0;21	n	0.00	0	15.0	0	1;29	n	0.07	1	13.5	1	2;25	n	0.00	0	14.0	0	0;28	n	0.24	4	13.0	4	0;26	y	0.00	0	12.5	0	2;23	n	0.05	1	19.5	1	1;38	n	ENSMUSG00000035139.15	Secisbp2	chr13	protein_coding	SECIS binding protein 2
novel_NIR_5140	chr13	51832917	51833769	+	51833026	51833769	A5SS	ENSMUST00000040117.15	novel	0.16	5	27	5	27	y	0.04	1	24	1	24	n	0.17	7	34	7	34	y	0.06	2	32	2	32	n	0.00	0	26	0	26	n	0.00	0	25	0	25	n	0.12	5	38	5	38	n	0.00	0	25	0	25	n	0.17	4	19	4	19	y	0.00	0	31	0	31	n	0.08	3	36	3	36	n	0.06	1	17	1	17	n	ENSMUSG00000035139.15	Secisbp2	chr13	protein_coding	SECIS binding protein 2
novel_NIR_5141	chr13	51855076	51857238	-	51855076	51858989	A5SS	ENSMUST00000110042.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.25	2	6	2	6	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021451.17	Sema4d	chr13	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D
novel_NIR_5142	chr13	52334591	52335217	+	52334591	52335212	A3SS	ENSMUST00000222876.2	novel	0.00	0	2	0	2	n	0.75	3	1	3	1	y	0.55	44	36	44	36	y	0.83	5	1	5	1	y	0.25	2	6	2	6	y	0.68	34	16	34	16	y	0.65	15	8	15	8	y	0.39	15	23	15	23	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.09	1	10	1	10	n	ENSMUSG00000113399.2	Gm48199	chr13	lncRNA	predicted gene, 48199
novel_NIR_5143	chr13	53052772	53066944	-	53064542	53066944	3pMXE	ENSMUST00000230563.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000021460.18	Auh	chr13	protein_coding	AU RNA binding protein/enoyl-coenzyme A hydratase
novel_NIR_5144	chr13	53052772	53083491	-	53082975	53083491	3pMXE	ENSMUST00000151469.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000021460.18	Auh	chr13	protein_coding	AU RNA binding protein/enoyl-coenzyme A hydratase
novel_NIR_5145	chr13	53064628	53066944	-	53064542	53066944	A3SS	ENSMUST00000230563.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000021460.18	Auh	chr13	protein_coding	AU RNA binding protein/enoyl-coenzyme A hydratase
novel_NIR_5146	chr13	53123057	53131683	-	53123057	53134897	A5SS	ENSMUST00000071065.8	novel	0.22	13	46	13	46	y	0.41	23	33	23	33	y	0.08	10	110	10	110	n	0.29	16	39	16	39	n	0.29	32	80	32	80	n	0.03	2	56	2	56	n	0.30	29	69	29	69	n	0.12	8	61	8	61	n	0.34	15	29	15	29	y	0.35	23	43	23	43	y	0.20	10	41	10	41	y	0.28	24	61	24	61	y	ENSMUSG00000056749.8	Nfil3	chr13	protein_coding	nuclear factor, interleukin 3, regulated
novel_NIR_5147	chr13	53123057	53136802	-	53123057	53134897	5pMXE	ENSMUST00000071065.8	novel	0.04	2	46	2	46	n	0.00	0	33	0	33	n	0.06	7	110	7	110	n	0.20	10	39	10	39	y	0.00	0	80	0	80	n	0.12	8	56	8	56	n	0.07	5	69	5	69	n	0.03	2	61	2	61	n	0.09	3	29	3	29	n	0.04	2	43	2	43	n	0.02	1	41	1	41	n	0.10	7	61	7	61	n	ENSMUSG00000056749.8	Nfil3	chr13	protein_coding	nuclear factor, interleukin 3, regulated
novel_NIR_5148	chr13	54227871	54239468	+	54225951	54239468	A5SS	ENSMUST00000021930.10	novel	0.16	13	70	13	70	y	0.11	9	72	9	72	n	0.08	13	142	13	142	n	0.11	15	120	15	120	n	0.13	19	125	19	125	n	0.01	1	66	1	66	n	0.08	9	102	9	102	n	0.15	10	56	10	56	y	0.02	1	51	1	51	n	0.09	9	94	9	94	n	0.16	13	67	13	67	y	0.11	11	93	11	93	n	ENSMUSG00000021474.10	Sfxn1	chr13	protein_coding	sideroflexin 1
novel_NIR_5149	chr13	54466123	54526394	+	54466123	54466339	3pMXE	ENSMUST00000221369.2	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000112941.2	Gm48623	chr13	lncRNA	predicted gene, 48623
novel_NIR_5150	chr13	54466123	54526394	+	54519388	54526394	5pMXE	ENSMUST00000026985.9	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000025867.9	Cplx2	chr13	protein_coding	complexin 2
novel_NIR_5151	chr13	54651817	54660133	+	54651817	54671783	A3SS	ENSMUST00000121401.8	novel	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.25	1	3	1	3	n	ENSMUSG00000043183.19	Simc1	chr13	protein_coding	SUMO-interacting motifs containing 1
novel_NIR_5152	chr13	54651817	54660133	+	54651817	54676117	A3SS	ENSMUST00000118072.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000043183.19	Simc1	chr13	protein_coding	SUMO-interacting motifs containing 1
novel_NIR_5153	chr13	54651817	54660133	+	54651817	54676967	A3SS	ENSMUST00000138869.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000043183.19	Simc1	chr13	protein_coding	SUMO-interacting motifs containing 1
novel_NIR_5154	chr13	54651817	54660133	+	54651817	54684895	A3SS	ENSMUST00000159721.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000043183.19	Simc1	chr13	protein_coding	SUMO-interacting motifs containing 1
novel_NIR_5155	chr13	54723222	54723563	+	54723090	54723563	A5SS	ENSMUST00000026988.11	novel	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.17	2	10	2	10	y	0.00	0	6	0	6	n	0.19	3	13	3	13	y	0.20	1	4	1	4	n	0.00	0	17	0	17	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	ENSMUSG00000025870.11	Arl10	chr13	protein_coding	ADP-ribosylation factor-like 10
novel_NIR_5156	chr13	54741855	54742956	-	54741855	54744839	A5SS	ENSMUST00000049575.8	novel	0.00	0	1	0	1	n	0.67	4	2	4	2	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.75	6	2	6	2	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.67	2	1	2	1	y	0.50	1	1	1	1	n	0.33	2	4	2	4	y	ENSMUSG00000047547.15	Cltb	chr13	protein_coding	clathrin, light polypeptide (Lcb)
novel_NIR_5157	chr13	54741855;54743040	54742956;54746535	-	54741855;54744892	54744839;54746535	MXE	ENSMUST00000049575.8	novel	0.00	0.0	0.5	0;0	1;0	n	0.60	3.0	2.0	4;2	2;2	y	0.20	0.5	2.0	1;0	2;2	n	0.00	0.0	1.0	0;0	2;0	n	0.62	4.0	2.5	6;2	2;3	y	0.33	0.5	1.0	1;0	1;1	n	0.14	0.5	3.0	0;1	2;4	n	-	-	-	-	-	-	0.12	0.5	3.5	0;1	3;4	n	0.29	1.0	2.5	2;0	1;4	n	0.60	1.5	1.0	1;2	1;1	n	0.20	1.0	4.0	2;0	4;4	n	ENSMUSG00000047547.15	Cltb	chr13	protein_coding	clathrin, light polypeptide (Lcb)
novel_NIR_5158	chr13	54743040	54746535	-	54741704	54746535	A3SS	ENSMUST00000140142.8	novel	-	-	-	-	-	-	0.20	2	8	2	8	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000047547.15	Cltb	chr13	protein_coding	clathrin, light polypeptide (Lcb)
novel_NIR_5159	chr13	54777277	54778848	+	54777277	54786063	A3SS	ENSMUST00000137413.8	novel	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.38	3	5	3	5	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	ENSMUSG00000025873.17	Faf2	chr13	protein_coding	Fas associated factor family member 2
novel_NIR_5160	chr13	54832301	54841785	-	54832301	54834902	5pMXE	ENSMUST00000123333.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000034928.17	Rnf44	chr13	protein_coding	ring finger protein 44
novel_NIR_5161	chr13	54832301	54841785	-	54832301	54835307	5pMXE	ENSMUST00000177950.8	novel	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.11	1	8	1	8	n	0.00	0	12	0	12	n	0.67	2	1	2	1	y	0.00	0	4	0	4	n	0.40	2	3	2	3	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	ENSMUSG00000034928.17	Rnf44	chr13	protein_coding	ring finger protein 44
novel_NIR_5162	chr13	54832301	54841785	-	54832301	54835844	5pMXE	ENSMUST00000150806.8	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.12	1	7	1	7	n	0.00	0	7	0	7	n	0.29	2	5	2	5	y	0.00	0	5	0	5	n	0.17	2	10	2	10	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	ENSMUSG00000034928.17	Rnf44	chr13	protein_coding	ring finger protein 44
novel_NIR_5163	chr13	54832301	54841785	-	54832301	54835985	5pMXE	ENSMUST00000122935.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034928.17	Rnf44	chr13	protein_coding	ring finger protein 44
novel_NIR_5164	chr13	55224266	55225216	-	55217620	55225216	A3SS	ENSMUST00000099496.4	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.11	1	8	1	8	n	0.43	3	4	3	4	y	0.33	3	6	3	6	y	0.00	0	3	0	3	n	0.60	3	2	3	2	y	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.57	4	3	4	3	y	ENSMUSG00000025878.17	Uimc1	chr13	protein_coding	ubiquitin interaction motif containing 1
novel_NIR_5165	chr13	55241094	55241777	-	55241094	55248010	A5SS	ENSMUST00000026997.12	novel	0.43	10	13	10	13	y	0.36	10	18	10	18	y	0.42	13	18	13	18	y	0.50	13	13	13	13	n	0.44	21	27	21	27	y	0.47	8	9	8	9	y	0.49	18	19	18	19	y	0.35	7	13	7	13	y	0.50	19	19	19	19	y	0.40	20	30	20	30	y	0.21	3	11	3	11	y	0.24	8	26	8	26	y	ENSMUSG00000025878.17	Uimc1	chr13	protein_coding	ubiquitin interaction motif containing 1
novel_NIR_5166	chr13	55253331	55255108	+	55253331	55260849	A3SS	ENSMUST00000161018.8	novel	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.20	3	12	3	12	y	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	15	0	15	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000021481.12	Zfp346	chr13	protein_coding	zinc finger protein 346
novel_NIR_5167	chr13	55307030	55307765	+	55307030	55307736	A3SS	ENSMUST00000005452.6	novel	0.08	4	49	4	49	n	0.00	0	37	0	37	n	0.09	9	90	9	90	n	0.15	8	47	8	47	y	0.04	4	98	4	98	n	0.00	0	34	0	34	n	0.00	0	44	0	44	n	0.03	2	75	2	75	n	0.18	6	27	6	27	y	0.00	0	51	0	51	n	0.00	0	35	0	35	n	0.09	5	53	5	53	n	ENSMUSG00000005320.10	Fgfr4	chr13	protein_coding	fibroblast growth factor receptor 4
novel_NIR_5168	chr13	55359656	55361017	+	55357688	55361017	A5SS	ENSMUST00000224973.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	ENSMUSG00000021488.9	Nsd1	chr13	protein_coding	nuclear receptor-binding SET-domain protein 1
novel_NIR_5169	chr13	55359656	55361017	+	55358878	55361017	A5SS	ENSMUST00000224156.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.60	3	2	3	2	y	1.00	3	0	3	0	y	ENSMUSG00000021488.9	Nsd1	chr13	protein_coding	nuclear receptor-binding SET-domain protein 1
novel_NIR_5170	chr13	55359656	55361017	+	55359402	55361017	A5SS	ENSMUST00000224338.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	ENSMUSG00000021488.9	Nsd1	chr13	protein_coding	nuclear receptor-binding SET-domain protein 1
novel_NIR_5171	chr13	55359656	55361017	+	55359813	55361017	A5SS	ENSMUST00000224918.2	novel	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.11	2	16	2	16	n	0.00	0	17	0	17	n	0.00	0	13	0	13	n	0.07	1	13	1	13	n	0.10	1	9	1	9	n	0.00	0	16	0	16	n	0.27	3	8	3	8	y	0.23	3	10	3	10	y	ENSMUSG00000021488.9	Nsd1	chr13	protein_coding	nuclear receptor-binding SET-domain protein 1
novel_NIR_5172	chr13	55359656	55361017	+	55359920	55361017	5pMXE	ENSMUST00000225194.2	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.75	3	1	3	1	y	0.60	3	2	3	2	y	ENSMUSG00000021488.9	Nsd1	chr13	protein_coding	nuclear receptor-binding SET-domain protein 1
novel_NIR_5173	chr13	55359656	55361017	+	55360430	55361017	5pMXE	ENSMUST00000225169.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.60	3	2	3	2	y	ENSMUSG00000021488.9	Nsd1	chr13	protein_coding	nuclear receptor-binding SET-domain protein 1
novel_NIR_5174	chr13	55361963	55386503	+	55361963	55393331	A3SS	ENSMUST00000224973.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021488.9	Nsd1	chr13	protein_coding	nuclear receptor-binding SET-domain protein 1
novel_NIR_5175	chr13	55386675	55389782	+	55386675	55388355	3pMXE	ENSMUST00000224156.2	novel	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	27	0	27	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.25	3	9	3	9	y	0.00	0	9	0	9	n	0.00	0	5	0	5	n	ENSMUSG00000021488.9	Nsd1	chr13	protein_coding	nuclear receptor-binding SET-domain protein 1
novel_NIR_5176	chr13	55458354	55459759	+	55458354	55459932	A3SS	ENSMUST00000224973.2	novel	0.07	3	42	3	42	n	0.23	7	23	7	23	y	0.40	17	26	17	26	n	0.06	2	30	2	30	n	0.06	3	51	3	51	n	0.12	4	30	4	30	n	0.08	3	33	3	33	n	0.00	0	25	0	25	n	0.15	3	17	3	17	y	0.12	5	36	5	36	n	0.16	5	26	5	26	y	0.27	10	27	10	27	y	ENSMUSG00000021488.9	Nsd1	chr13	protein_coding	nuclear receptor-binding SET-domain protein 1
novel_NIR_5177	chr13	55458354;55459796	55459759;55459932	+	55458354	55459932	cassetteExon	ENSMUST00000224973.2	novel	0.03	1.5	42	3;0	42	n	0.13	3.5	23	7;0	23	n	0.29	10.5	26	17;4	26	y	0.03	1.0	30	2;0	30	n	0.03	1.5	51	3;0	51	n	0.06	2.0	30	4;0	30	n	0.04	1.5	33	3;0	33	n	0.00	0.0	25	0;0	25	n	0.08	1.5	17	3;0	17	n	0.06	2.5	36	5;0	36	n	0.09	2.5	26	5;0	26	n	0.16	5.0	27	10;0	27	n	ENSMUSG00000021488.9	Nsd1	chr13	protein_coding	nuclear receptor-binding SET-domain protein 1
novel_NIR_5178	chr13	55467978	55468125	-	55468049	55468125	A3SS	ENSMUST00000224685.2	novel	0.71	5	2	5	2	y	0.41	7	10	7	10	y	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.47	8	9	8	9	y	0.00	0	5	0	5	n	0.61	11	7	11	7	y	0.75	6	2	6	2	y	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.64	14	8	14	8	y	0.00	0	12	0	12	n	ENSMUSG00000034789.9	Rab24	chr13	protein_coding	RAB24, member RAS oncogene family
novel_NIR_5179	chr13	55468018	55468125	-	55468049	55468125	A3SS	ENSMUST00000224685.2	novel	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.12	1	7	1	7	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.29	5	12	5	12	y	ENSMUSG00000034789.9	Rab24	chr13	protein_coding	RAB24, member RAS oncogene family
novel_NIR_5180	chr13	55566313	55566815	-	55566313	55574116	A5SS	ENSMUST00000170921.2	novel	0.25	1	3	1	3	n	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	ENSMUSG00000021492.16	F12	chr13	protein_coding	coagulation factor XII (Hageman factor)
novel_NIR_5181	chr13	55566313	55568462	-	55566313	55574116	A5SS	ENSMUST00000170921.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.60	3	2	3	2	y	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.75	3	1	3	1	y	ENSMUSG00000021492.16	F12	chr13	protein_coding	coagulation factor XII (Hageman factor)
novel_NIR_5182	chr13	55566313	55568535	-	55566313	55574116	A5SS	ENSMUST00000170921.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.99	69	1	69	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	30	0	30	0	y	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	ENSMUSG00000021492.16	F12	chr13	protein_coding	coagulation factor XII (Hageman factor)
novel_NIR_5183	chr13	55569890	55574116	-	55566313	55574116	A3SS	ENSMUST00000170921.2	novel	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	ENSMUSG00000021492.16	F12	chr13	protein_coding	coagulation factor XII (Hageman factor)
novel_NIR_5184	chr13	55570289	55574116	-	55566313	55574116	A3SS	ENSMUST00000170921.2	novel	0.62	5	3	5	3	y	-	-	-	-	-	-	0.75	6	2	6	2	y	0.67	2	1	2	1	y	0.86	6	1	6	1	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.25	2	6	2	6	y	0.78	7	2	7	2	y	0.14	1	6	1	6	n	0.80	4	1	4	1	y	ENSMUSG00000021492.16	F12	chr13	protein_coding	coagulation factor XII (Hageman factor)
novel_NIR_5185	chr13	55597005	55597121	+	55593094	55597121	A5SS	ENSMUST00000224653.2	novel	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.25	1	3	1	3	n	ENSMUSG00000074886.12	Grk6	chr13	protein_coding	G protein-coupled receptor kinase 6
novel_NIR_5186	chr13	55597005	55597121	+	55593373	55597121	A5SS	ENSMUST00000001115.16	novel	0.21	4	15	4	15	y	0.08	1	11	1	11	n	0.00	0	28	0	28	n	0.00	0	20	0	20	n	0.03	1	36	1	36	n	0.00	0	17	0	17	n	0.06	2	29	2	29	n	0.00	0	13	0	13	n	0.14	2	12	2	12	n	0.03	1	30	1	30	n	0.00	0	15	0	15	n	0.04	1	26	1	26	n	ENSMUSG00000074886.12	Grk6	chr13	protein_coding	G protein-coupled receptor kinase 6
novel_NIR_5187	chr13	55599649	55599948	+	55599656	55599948	A5SS	ENSMUST00000224653.2	novel	0.00	0	21	0	21	n	0.03	1	37	1	37	n	0.00	0	41	0	41	n	0.03	1	32	1	32	n	0.00	0	40	0	40	n	0.04	1	23	1	23	n	0.00	0	41	0	41	n	0.22	4	14	4	14	y	0.06	2	33	2	33	n	0.00	0	47	0	47	n	0.00	0	32	0	32	n	0.00	0	38	0	38	n	ENSMUSG00000074886.12	Grk6	chr13	protein_coding	G protein-coupled receptor kinase 6
novel_NIR_5188	chr13	55651461	55652471	-	55647034	55652471	A3SS	ENSMUST00000155098.8	novel	0.00	0	15	0	15	n	0.00	0	23	0	23	n	0.00	0	51	0	51	n	0.00	0	7	0	7	n	0.06	1	16	1	16	n	0.00	0	22	0	22	n	0.00	0	34	0	34	n	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.24	4	13	4	13	y	ENSMUSG00000021493.16	Pdlim7	chr13	protein_coding	PDZ and LIM domain 7
novel_NIR_5189	chr13	55660231	55660540	-	55660231	55660343	5pMXE	ENSMUST00000153426.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021493.16	Pdlim7	chr13	protein_coding	PDZ and LIM domain 7
novel_NIR_5190	chr13	55660231	55660540	-	55660231	55661180	A5SS	ENSMUST00000155098.8	novel	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	24	0	24	n	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.20	2	8	2	8	y	0.00	0	22	0	22	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	ENSMUSG00000021493.16	Pdlim7	chr13	protein_coding	PDZ and LIM domain 7
novel_NIR_5191	chr13	55660231	55660540	-	55660231	55661417	A5SS	ENSMUST00000144288.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021493.16	Pdlim7	chr13	protein_coding	PDZ and LIM domain 7
novel_NIR_5192	chr13	55673826	55675145	-	55672393	55675145	A3SS	ENSMUST00000223944.2	novel	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.29	2	5	2	5	y	0.00	0	2	0	2	n	0.00	0	6	0	6	n	ENSMUSG00000035711.6	Dok3	chr13	protein_coding	docking protein 3
novel_NIR_5193	chr13	55689534	55690391	-	55689534	55690597	A5SS	ENSMUST00000224249.2	novel	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	1.00	1	0	1	0	n	ENSMUSG00000021495.11	Fam193b	chr13	protein_coding	family with sequence similarity 193, member B
novel_NIR_5194	chr13	55691602	55695096	-	55691602	55717518	A5SS	ENSMUST00000224275.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000021495.11	Fam193b	chr13	protein_coding	family with sequence similarity 193, member B
novel_NIR_5195	chr13	55691602	55700775	-	55691602	55717518	A5SS	ENSMUST00000224275.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021495.11	Fam193b	chr13	protein_coding	family with sequence similarity 193, member B
novel_NIR_5196	chr13	55697170;55697820	55697775;55698037	-	55697170	55698037	cassetteExon	ENSMUST00000021957.8	novel	0.13	10.0	68	10;10	68	n	0.11	8.5	72	6;11	72	n	0.14	7.0	43	8;6	43	n	0.05	3.0	58	3;3	58	n	0.07	6.5	92	9;4	92	n	0.06	2.0	30	3;1	30	n	0.11	8.5	69	10;7	69	n	0.18	8.5	39	8;9	39	y	0.16	11.5	62	12;11	62	y	0.10	9.0	80	8;10	80	n	0.09	8.0	79	9;7	79	n	0.15	9.0	53	9;9	53	y	ENSMUSG00000021495.11	Fam193b	chr13	protein_coding	family with sequence similarity 193, member B
novel_NIR_5197	chr13	55697479	55698037	-	55691602	55698037	A3SS	ENSMUST00000225240.3	novel	0.05	1	18	1	18	n	0.00	0	5	0	5	n	0.08	1	11	1	11	n	0.20	2	8	2	8	y	0.06	1	15	1	15	n	0.00	0	6	0	6	n	0.08	1	12	1	12	n	0.25	1	3	1	3	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.06	1	16	1	16	n	0.06	1	15	1	15	n	ENSMUSG00000021495.11	Fam193b	chr13	protein_coding	family with sequence similarity 193, member B
novel_NIR_5198	chr13	55697820	55698037	-	55691602	55698037	A3SS	ENSMUST00000225240.3	novel	0.36	10	18	10	18	y	0.69	11	5	11	5	y	0.35	6	11	6	11	y	0.27	3	8	3	8	y	0.21	4	15	4	15	y	0.14	1	6	1	6	n	0.37	7	12	7	12	y	0.75	9	3	9	3	y	0.50	11	11	11	11	y	0.40	10	15	10	15	y	0.30	7	16	7	16	y	0.38	9	15	9	15	y	ENSMUSG00000021495.11	Fam193b	chr13	protein_coding	family with sequence similarity 193, member B
novel_NIR_5199	chr13	55702261	55717518	-	55691602	55717518	A3SS	ENSMUST00000224275.2	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000021495.11	Fam193b	chr13	protein_coding	family with sequence similarity 193, member B
novel_NIR_5200	chr13	55704038	55717518	-	55691602	55717518	A3SS	ENSMUST00000224275.2	novel	1.00	25	0	25	0	y	1.00	23	0	23	0	y	1.00	22	0	22	0	y	1.00	23	0	23	0	y	1.00	22	0	22	0	y	1.00	23	0	23	0	y	0.96	23	1	23	1	y	1.00	22	0	22	0	y	0.95	18	1	18	1	y	1.00	32	0	32	0	y	1.00	19	0	19	0	y	1.00	21	0	21	0	y	ENSMUSG00000021495.11	Fam193b	chr13	protein_coding	family with sequence similarity 193, member B
novel_NIR_5201	chr13	55704038	55717518	-	55704038	55718588	A5SS	ENSMUST00000225240.3	novel	0.93	25	2	25	2	n	1.00	23	0	23	0	n	0.88	22	3	22	3	n	1.00	23	0	23	0	y	0.92	22	2	22	2	n	1.00	23	0	23	0	y	0.96	23	1	23	1	y	1.00	22	0	22	0	n	1.00	18	0	18	0	y	0.97	32	1	32	1	n	1.00	19	0	19	0	y	0.91	21	2	21	2	n	ENSMUSG00000021495.11	Fam193b	chr13	protein_coding	family with sequence similarity 193, member B
novel_NIR_5202	chr13	55704038	55717518	-	55704038;55712393	55712333;55717518	ES	ENSMUST00000021957.8	novel	0.29	25	61.5	25	82;41	y	0.32	23	48.0	23	48;48	y	0.38	22	36.5	22	42;31	y	0.37	23	39.5	23	49;30	y	0.27	22	61.0	22	61;61	y	0.46	23	27.5	23	29;26	y	0.29	23	55.0	23	63;47	y	0.52	22	20.0	22	18;22	y	0.34	18	34.5	18	35;34	y	0.34	32	63.0	32	67;59	y	0.27	19	52.5	19	52;53	y	0.24	21	67.0	21	75;59	y	ENSMUSG00000021495.11	Fam193b	chr13	protein_coding	family with sequence similarity 193, member B
novel_NIR_5203	chr13	55704038;55717693	55717518;55718588	-	55704038	55718588	cassetteExon	ENSMUST00000225240.3	novel	0.86	12.5	2	25;0	2	n	1.00	11.5	0	23;0	0	n	0.79	11.5	3	22;1	3	n	1.00	11.5	0	23;0	0	n	0.85	11.0	2	22;0	2	n	1.00	11.5	0	23;0	0	n	0.92	11.5	1	23;0	1	n	1.00	11.5	0	22;1	0	n	1.00	9.0	0	18;0	0	n	0.94	16.0	1	32;0	1	n	1.00	9.5	0	19;0	0	n	0.85	11.5	2	21;2	2	y	ENSMUSG00000021495.11	Fam193b	chr13	protein_coding	family with sequence similarity 193, member B
novel_NIR_5204	chr13	55704038;55717697	55717518;55718588	-	55704038	55718588	cassetteExon	ENSMUST00000225240.3	novel	0.86	12.5	2	25;0	2	n	1.00	11.5	0	23;0	0	n	0.79	11.0	3	22;0	3	n	1.00	11.5	0	23;0	0	n	0.85	11.0	2	22;0	2	n	1.00	11.5	0	23;0	0	n	0.92	11.5	1	23;0	1	n	1.00	11.0	0	22;0	0	n	1.00	9.0	0	18;0	0	n	0.94	17.0	1	32;2	1	y	1.00	9.5	0	19;0	0	n	0.84	10.5	2	21;0	2	n	ENSMUSG00000021495.11	Fam193b	chr13	protein_coding	family with sequence similarity 193, member B
novel_NIR_5205	chr13	55704038;55717701	55717518;55718588	-	55704038	55718588	cassetteExon	ENSMUST00000225240.3	novel	0.86	12.5	2	25;0	2	n	1.00	13.0	0	23;3	0	y	0.79	11.0	3	22;0	3	n	1.00	11.5	0	23;0	0	n	0.85	11.0	2	22;0	2	n	1.00	11.5	0	23;0	0	n	0.92	11.5	1	23;0	1	n	1.00	11.0	0	22;0	0	n	1.00	9.0	0	18;0	0	n	0.94	16.0	1	32;0	1	n	1.00	9.5	0	19;0	0	n	0.84	10.5	2	21;0	2	n	ENSMUSG00000021495.11	Fam193b	chr13	protein_coding	family with sequence similarity 193, member B
novel_NIR_5206	chr13	55704038;55717710	55717518;55718588	-	55704038	55718588	cassetteExon	ENSMUST00000225240.3	novel	0.87	13.0	2	25;1	2	n	1.00	13.0	0	23;3	0	y	0.80	12.0	3	22;2	3	y	1.00	11.5	0	23;0	0	n	0.85	11.5	2	22;1	2	n	1.00	11.5	0	23;0	0	n	0.92	11.5	1	23;0	1	n	1.00	11.0	0	22;0	0	n	1.00	9.0	0	18;0	0	n	0.95	17.5	1	32;3	1	y	1.00	9.5	0	19;0	0	n	0.87	13.0	2	21;5	2	y	ENSMUSG00000021495.11	Fam193b	chr13	protein_coding	family with sequence similarity 193, member B
novel_NIR_5207	chr13	55712388	55717518	-	55691602	55717518	A3SS	ENSMUST00000224275.2	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000021495.11	Fam193b	chr13	protein_coding	family with sequence similarity 193, member B
novel_NIR_5208	chr13	56222205	56243937	-	56243454	56243937	3pMXE	ENSMUST00000139511.8	novel	0.14	2	12	2	12	n	0.00	0	10	0	10	n	0.03	1	29	1	29	n	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.00	0	11	0	11	n	0.25	3	9	3	9	y	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	ENSMUSG00000015937.16	Macroh2a1	chr13	protein_coding	macroH2A.1 histone
novel_NIR_5209	chr13	56437620	56440008	-	56437620	56443639	A5SS	ENSMUST00000224801.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	3	3	3	3	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021508.12	Cxcl14	chr13	protein_coding	chemokine (C-X-C motif) ligand 14
novel_NIR_5210	chr13	56438658	56440274	-	56437620	56440274	A3SS	ENSMUST00000021970.11	novel	0.00	0	14	0	14	n	0.20	2	8	2	8	y	0.04	18	413	18	413	n	0.09	1	10	1	10	n	0.01	1	71	1	71	n	0.02	3	167	3	167	n	0.00	0	39	0	39	n	0.00	0	55	0	55	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	ENSMUSG00000021508.12	Cxcl14	chr13	protein_coding	chemokine (C-X-C motif) ligand 14
novel_NIR_5211	chr13	56880884	56883689	+	56880884	56883613	A3SS	ENSMUST00000069557.14	novel	0.00	0	18	0	18	n	0.00	0	8	0	8	n	0.00	0	30	0	30	n	0.00	0	16	0	16	n	0.00	0	19	0	19	n	0.00	0	15	0	15	n	0.00	0	28	0	28	n	0.00	0	15	0	15	n	0.00	0	17	0	17	n	0.00	0	24	0	24	n	0.25	5	15	5	15	y	0.00	0	18	0	18	n	ENSMUSG00000021540.17	Smad5	chr13	protein_coding	SMAD family member 5
novel_NIR_5212	chr13	58175286	58178227	-	58167300	58178227	A3SS	ENSMUST00000091583.6	novel	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.50	2	2	2	2	y	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000014164.16	Klhl3	chr13	protein_coding	kelch-like 3
novel_NIR_5213	chr13	58181156	58211515	-	58181156;58198952	58198843;58211515	ES	ENSMUST00000091583.6	novel	0.00	0	4.5	0	7;2	n	0.29	2	5.0	2	5;5	y	0.00	0	3.5	0	4;3	n	0.00	0	5.0	0	6;4	n	0.00	0	9.5	0	9;10	n	0.00	0	2.5	0	4;1	n	0.00	0	5.0	0	6;4	n	0.00	0	3.0	0	4;2	n	0.00	0	2.5	0	2;3	n	0.00	0	7.5	0	10;5	n	0.00	0	4.0	0	4;4	n	0.00	0	6.5	0	5;8	n	ENSMUSG00000014164.16	Klhl3	chr13	protein_coding	kelch-like 3
novel_NIR_5214	chr13	58211225	58211515	-	58198952	58211515	A3SS	ENSMUST00000091583.6	novel	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.33	2	4	2	4	y	0.00	0	8	0	8	n	ENSMUSG00000014164.16	Klhl3	chr13	protein_coding	kelch-like 3
novel_NIR_5215	chr13	58243029	58271202	-	58243029	58260956	5pMXE	ENSMUST00000160860.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000014164.16	Klhl3	chr13	protein_coding	kelch-like 3
novel_NIR_5216	chr13	58308052	58311266	+	58308052	58310652	A3SS&ES	ENSMUST00000051490.15	novel	0.03	2	70	2	70	n	0.00	0	75	0	75	n	0.14	3	18	3	18	n	0.09	7	70	7	70	n	0.04	3	64	3	64	n	0.00	0	20	0	20	n	0.15	14	77	14	77	y	0.00	0	21	0	21	n	0.03	2	73	2	73	n	0.07	7	91	7	91	n	0.10	9	85	9	85	n	0.00	0	85	0	85	n	ENSMUSG00000050002.15	Idnk	chr13	protein_coding	idnK gluconokinase homolog (E. coli)
novel_NIR_5217	chr13	58308052;58308594	58308477;58310652	+	58308052	58310652	cassetteExon	ENSMUST00000051490.15	novel	0.06	4.5	70	2;7	70	n	0.00	0.0	75	0;0	75	n	0.16	3.5	18	2;5	18	y	0.00	0.0	70	0;0	70	n	0.01	0.5	64	0;1	64	n	0.02	0.5	20	1;0	20	n	0.00	0.0	77	0;0	77	n	0.05	1.0	21	0;2	21	n	0.01	1.0	73	2;0	73	n	0.01	0.5	91	1;0	91	n	0.02	1.5	85	0;3	85	n	0.00	0.0	85	0;0	85	n	ENSMUSG00000050002.15	Idnk	chr13	protein_coding	idnK gluconokinase homolog (E. coli)
novel_NIR_5218	chr13	58310695	58311266	+	58310695	58311247	A3SS	ENSMUST00000051490.15	novel	0.00	0	62	0	62	n	0.07	5	65	5	65	n	0.15	4	23	4	23	y	0.00	0	73	0	73	n	0.03	2	62	2	62	n	0.00	0	29	0	29	n	0.00	0	85	0	85	n	0.11	3	24	3	24	n	0.00	0	57	0	57	n	0.01	1	105	1	105	n	0.00	0	82	0	82	n	0.14	16	95	16	95	n	ENSMUSG00000050002.15	Idnk	chr13	protein_coding	idnK gluconokinase homolog (E. coli)
novel_NIR_5219	chr13	58412013	58421111	-	58412013	58421448	A5SS	ENSMUST00000224505.2	novel	0.67	4	2	4	2	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.25	1	3	1	3	n	ENSMUSG00000021552.8	Gkap1	chr13	protein_coding	G kinase anchoring protein 1
novel_NIR_5220	chr13	58412013	58421111	-	58412013	58421888	A5SS	ENSMUST00000091579.6	novel	0.19	4	17	4	17	y	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.12	2	14	2	14	n	0.03	1	32	1	32	n	0.00	0	12	0	12	n	0.00	0	27	0	27	n	0.00	0	9	0	9	n	0.06	1	17	1	17	n	0.00	0	30	0	30	n	0.00	0	14	0	14	n	0.03	1	31	1	31	n	ENSMUSG00000021552.8	Gkap1	chr13	protein_coding	G kinase anchoring protein 1
novel_NIR_5221	chr13	58412013	58421111	-	58412013	58422466	A5SS	ENSMUST00000225034.2	novel	1.00	4	0	4	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000021552.8	Gkap1	chr13	protein_coding	G kinase anchoring protein 1
novel_NIR_5222	chr13	58412013	58421111	-	58412013	58423314	A5SS	ENSMUST00000223811.2	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000021552.8	Gkap1	chr13	protein_coding	G kinase anchoring protein 1
novel_NIR_5223	chr13	59756009	59764558	+	59757407	59764558	5pMXE	ENSMUST00000168242.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021555.16	Naa35	chr13	protein_coding	N(alpha)-acetyltransferase 35, NatC auxiliary subunit
novel_NIR_5224	chr13	59920669	59929832	-	59910609	59929832	A3SS	ENSMUST00000225581.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.83	5	1	5	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	0.75	6	2	6	2	y	ENSMUSG00000114763.2	Gm49354	chr13	protein_coding	predicted gene, 49354
novel_NIR_5225	chr13	59920669	59929832	-	59926629	59929832	A3SS&ES	ENSMUST00000071703.6	novel	0.00	0	19	0	19	n	0.00	0	20	0	20	n	0.07	2	25	2	25	n	0.00	0	22	0	22	n	0.19	5	21	5	21	y	0.00	0	9	0	9	n	0.00	0	24	0	24	n	0.00	0	14	0	14	n	0.00	0	27	0	27	n	0.11	4	33	4	33	n	0.00	0	27	0	27	n	0.16	6	32	6	32	y	ENSMUSG00000035248.10	Tut7	chr13	protein_coding	terminal uridylyl transferase 7
novel_NIR_5226	chr13	59927034	59929832	-	59910609	59929832	A3SS	ENSMUST00000225581.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000114763.2	Gm49354	chr13	protein_coding	predicted gene, 49354
novel_NIR_5227	chr13	59972783	59978082	+	59972783	59980772	A3SS	ENSMUST00000224737.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000114354.2	Gm34961	chr13	lncRNA	predicted gene, 34961
novel_NIR_5228	chr13	60749686	60750239	+	60750073	60750239	5pMXE	ENSMUST00000044083.9	novel	0.50	2	2	2	2	y	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	1.00	1	0	1	0	n	0.00	0	7	0	7	n	ENSMUSG00000021559.15	Dapk1	chr13	protein_coding	death associated protein kinase 1
novel_NIR_5229	chr13	60844266	60848477	+	60844266	60864500	A3SS	ENSMUST00000224789.2	novel	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	ENSMUSG00000021559.15	Dapk1	chr13	protein_coding	death associated protein kinase 1
novel_NIR_5230	chr13	60909504	60910171	+	60909677	60910171	A5SS	ENSMUST00000226059.2	novel	0.00	0	14	0	14	n	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.28	5	13	5	13	y	0.00	0	6	0	6	n	0.10	2	19	2	19	n	0.20	1	4	1	4	n	0.00	0	12	0	12	n	0.15	3	17	3	17	y	0.17	4	20	4	20	y	0.00	0	26	0	26	n	ENSMUSG00000021559.15	Dapk1	chr13	protein_coding	death associated protein kinase 1
novel_NIR_5231	chr13	60909504	60910171	+	60909698	60910171	A5SS	ENSMUST00000044083.9	novel	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.45	5	6	5	6	y	0.00	0	3	0	3	n	0.20	2	8	2	8	y	1.00	1	0	1	0	n	0.00	0	5	0	5	n	0.18	3	14	3	14	y	0.40	4	6	4	6	y	0.00	0	6	0	6	n	ENSMUSG00000021559.15	Dapk1	chr13	protein_coding	death associated protein kinase 1
novel_NIR_5232	chr13	61044174	61045149	-	61044174	61044442	5pMXE	ENSMUST00000225690.2	novel	0.06	2	31	2	31	n	0.20	6	24	6	24	y	0.08	5	60	5	60	n	0.00	0	12	0	12	n	0.14	6	38	6	38	n	0.04	1	24	1	24	n	0.20	6	24	6	24	y	0.06	1	15	1	15	n	0.00	0	17	0	17	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.19	3	13	3	13	y	ENSMUSG00000114635.2	Gm49392	chr13	protein_coding	predicted gene, 49392
novel_NIR_5233	chr13	61044174	61045149	-	61044174;61044559	61044442;61045149	ES	ENSMUST00000021884.10	novel	0.07	2	25.5	2	31;20	n	0.23	6	20.5	6	24;17	y	0.08	5	56.5	5	60;53	n	0.00	0	14.0	0	12;16	n	0.13	6	40.0	6	38;42	n	0.04	1	26.5	1	24;29	n	0.17	6	29.5	6	24;35	y	0.07	1	13.0	1	15;11	n	0.00	0	11.5	0	17;6	n	0.00	0	11.5	0	11;12	n	0.00	0	11.0	0	9;13	n	0.23	3	10.0	3	13;7	y	ENSMUSG00000074874.11	Ctla2b	chr13	protein_coding	cytotoxic T lymphocyte-associated protein 2 beta
novel_NIR_5234	chr13	63012981	63016796	-	63012981	63018980	A5SS	ENSMUST00000150013.2	novel	0.81	17	4	17	4	y	0.86	12	2	12	2	y	0.84	99	19	99	19	y	0.72	13	5	13	5	y	0.73	22	8	22	8	y	0.82	36	8	36	8	y	0.74	17	6	17	6	n	0.83	20	4	20	4	y	0.71	15	6	15	6	y	0.81	30	7	30	7	n	0.67	12	6	12	6	y	0.82	32	7	32	7	y	ENSMUSG00000069805.11	Fbp1	chr13	protein_coding	fructose bisphosphatase 1
novel_NIR_5235	chr13	63015272	63018980	-	63012981	63018980	A3SS	ENSMUST00000150013.2	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	19	0	19	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.33	2	4	2	4	y	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	ENSMUSG00000069805.11	Fbp1	chr13	protein_coding	fructose bisphosphatase 1
novel_NIR_5236	chr13	63018131	63018980	-	63012981	63018980	A3SS	ENSMUST00000150013.2	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	19	0	19	n	0.55	6	5	6	5	y	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	ENSMUSG00000069805.11	Fbp1	chr13	protein_coding	fructose bisphosphatase 1
novel_NIR_5237	chr13	63023125	63023639	-	63023125	63035465	A5SS	ENSMUST00000134814.2	novel	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.22	2	7	2	7	y	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.17	1	5	1	5	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000069805.11	Fbp1	chr13	protein_coding	fructose bisphosphatase 1
novel_NIR_5238	chr13	63023125	63023838	-	63023125	63035465	A5SS	ENSMUST00000134814.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.12	1	7	1	7	n	0.20	1	4	1	4	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.60	6	4	6	4	y	ENSMUSG00000069805.11	Fbp1	chr13	protein_coding	fructose bisphosphatase 1
novel_NIR_5239	chr13	63023125	63027195	-	63023125	63035465	A5SS	ENSMUST00000134814.2	novel	0.60	3	2	3	2	y	0.50	2	2	2	2	y	0.70	16	7	16	7	y	0.60	6	4	6	4	y	0.60	12	8	12	8	y	0.50	6	6	6	6	y	0.79	11	3	11	3	y	0.67	4	2	4	2	y	1.00	2	0	2	0	y	0.80	20	5	20	5	n	0.83	5	1	5	1	y	0.78	14	4	14	4	y	ENSMUSG00000069805.11	Fbp1	chr13	protein_coding	fructose bisphosphatase 1
novel_NIR_5240	chr13	63023125	63030281	-	63023125	63035465	A5SS	ENSMUST00000134814.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.30	3	7	3	7	y	0.33	2	4	2	4	y	0.00	0	8	0	8	n	0.14	1	6	1	6	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	ENSMUSG00000069805.11	Fbp1	chr13	protein_coding	fructose bisphosphatase 1
novel_NIR_5241	chr13	63023125	63031325	-	63023125	63035465	A5SS	ENSMUST00000134814.2	novel	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.30	3	7	3	7	y	0.20	1	4	1	4	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000069805.11	Fbp1	chr13	protein_coding	fructose bisphosphatase 1
novel_NIR_5242	chr13	63023125	63036199	-	63023125	63035465	5pMXE	ENSMUST00000134814.2	novel	0.75	6	2	6	2	y	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.56	5	4	5	4	y	0.20	2	8	2	8	y	0.40	4	6	4	6	y	0.57	4	3	4	3	y	0.33	1	2	1	2	n	1.00	1	0	1	0	n	0.58	7	5	7	5	y	0.50	1	1	1	1	n	0.00	0	4	0	4	n	ENSMUSG00000069805.11	Fbp1	chr13	protein_coding	fructose bisphosphatase 1
novel_NIR_5243	chr13	63023125	63036616	-	63023125	63035465	5pMXE	ENSMUST00000134814.2	novel	0.83	10	2	10	2	y	0.67	4	2	4	2	y	0.46	6	7	6	7	y	0.73	11	4	11	4	y	0.50	8	8	8	8	y	0.00	0	6	0	6	n	0.79	11	3	11	3	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.38	3	5	3	5	y	0.86	6	1	6	1	y	0.75	12	4	12	4	y	ENSMUSG00000069805.11	Fbp1	chr13	protein_coding	fructose bisphosphatase 1
novel_NIR_5244	chr13	63023125	63036790	-	63023125	63035465	5pMXE	ENSMUST00000134814.2	novel	0.00	0	2	0	2	n	0.60	3	2	3	2	y	0.00	0	7	0	7	n	0.20	1	4	1	4	n	0.43	6	8	6	8	y	0.00	0	6	0	6	n	0.67	6	3	6	3	y	0.00	0	2	0	2	n	1.00	5	0	5	0	y	0.55	6	5	6	5	y	0.00	0	1	0	1	n	0.56	5	4	5	4	y	ENSMUSG00000069805.11	Fbp1	chr13	protein_coding	fructose bisphosphatase 1
novel_NIR_5245	chr13	63023125	63055176	-	63023125	63035465	5pMXE	ENSMUST00000134814.2	novel	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.65	13	7	13	7	y	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.25	2	6	2	6	y	0.25	1	3	1	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000069805.11	Fbp1	chr13	protein_coding	fructose bisphosphatase 1
novel_NIR_5246	chr13	63023125;63027445	63027195;63035465	-	63023125	63035465	cassetteExon	ENSMUST00000134814.2	novel	0.43	1.5	2	3;0	2	n	0.33	1.0	2	2;0	2	n	0.53	8.0	7	16;0	7	n	0.43	3.0	4	6;0	4	n	0.43	6.0	8	12;0	8	n	0.33	3.0	6	6;0	6	n	0.65	5.5	3	11;0	3	n	0.50	2.0	2	4;0	2	n	1.00	1.0	0	2;0	0	n	0.69	11.0	5	20;2	5	y	0.71	2.5	1	5;0	1	n	0.64	7.0	4	14;0	4	n	ENSMUSG00000069805.11	Fbp1	chr13	protein_coding	fructose bisphosphatase 1
novel_NIR_5247	chr13	63388611	63429956	+	63357980	63429956	A5SS	ENSMUST00000222282.2	novel	0.75	3	1	3	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000021458.18	Aopep	chr13	protein_coding	aminopeptidase O
novel_NIR_5248	chr13	63388611	63429956	+	63421163	63429956	5pMXE	ENSMUST00000221364.2	novel	0.30	3	7	3	7	y	0.00	0	8	0	8	n	0.06	1	17	1	17	n	0.00	0	7	0	7	n	0.08	1	12	1	12	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.18	2	9	2	9	y	0.00	0	10	0	10	n	ENSMUSG00000021458.18	Aopep	chr13	protein_coding	aminopeptidase O
novel_NIR_5249	chr13	63388611	63429956	+	63421222	63429956	5pMXE	ENSMUST00000223204.2	novel	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.67	2	1	2	1	y	-	-	-	-	-	-	ENSMUSG00000021458.18	Aopep	chr13	protein_coding	aminopeptidase O
novel_NIR_5250	chr13	63388611	63429956	+	63427004	63429956	5pMXE	ENSMUST00000223073.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000021458.18	Aopep	chr13	protein_coding	aminopeptidase O
novel_NIR_5251	chr13	63434691	63444672	+	63388145	63444672	A5SS	ENSMUST00000221820.2	novel	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000021458.18	Aopep	chr13	protein_coding	aminopeptidase O
novel_NIR_5252	chr13	63434691	63444672	+	63444650	63444672	A5SS&ES	ENSMUST00000223185.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000021458.18	Aopep	chr13	protein_coding	aminopeptidase O
novel_NIR_5253	chr13	63446670	63446910	+	63446670	63448419	A3SS	ENSMUST00000220884.2	novel	0.50	1	1	1	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021458.18	Aopep	chr13	protein_coding	aminopeptidase O
novel_NIR_5254	chr13	63446670	63446910	+	63446670	63471593	A3SS	ENSMUST00000159152.3	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021458.18	Aopep	chr13	protein_coding	aminopeptidase O
novel_NIR_5255	chr13	63446670	63448356	+	63446670	63448419	A3SS	ENSMUST00000220884.2	novel	0.50	1	1	1	1	n	0.67	2	1	2	1	y	1.00	2	0	2	0	y	0.50	1	1	1	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000021458.18	Aopep	chr13	protein_coding	aminopeptidase O
novel_NIR_5256	chr13	63446670	63448356	+	63446670	63448936	A3SS	ENSMUST00000220485.2	novel	0.08	1	11	1	11	n	0.12	2	14	2	14	n	0.15	2	11	2	11	y	0.12	1	7	1	7	n	0.05	1	19	1	19	n	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.29	2	5	2	5	y	0.00	0	2	0	2	n	0.08	1	12	1	12	n	0.25	1	3	1	3	n	0.00	0	6	0	6	n	ENSMUSG00000021458.18	Aopep	chr13	protein_coding	aminopeptidase O
novel_NIR_5257	chr13	63446670	63448356	+	63446670	63471593	A3SS	ENSMUST00000159152.3	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.50	2	2	2	2	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000021458.18	Aopep	chr13	protein_coding	aminopeptidase O
novel_NIR_5258	chr13	63446670	63448959	+	63446670	63448419	A3SS&ES	ENSMUST00000220884.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021458.18	Aopep	chr13	protein_coding	aminopeptidase O
novel_NIR_5259	chr13	63446670	63448959	+	63446670	63448936	A3SS	ENSMUST00000220485.2	novel	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.15	2	11	2	11	y	0.00	0	7	0	7	n	0.05	1	19	1	19	n	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	ENSMUSG00000021458.18	Aopep	chr13	protein_coding	aminopeptidase O
novel_NIR_5260	chr13	63446670	63448959	+	63446670	63471593	A3SS	ENSMUST00000159152.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021458.18	Aopep	chr13	protein_coding	aminopeptidase O
novel_NIR_5261	chr13	63447753	63449593	+	63449120	63449593	A5SS&ES	ENSMUST00000220485.2	novel	0.00	0	17	0	17	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	15	0	15	n	0.00	0	3	0	3	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.29	2	5	2	5	y	0.00	0	16	0	16	n	0.00	0	12	0	12	n	0.00	0	11	0	11	n	ENSMUSG00000021458.18	Aopep	chr13	protein_coding	aminopeptidase O
novel_NIR_5262	chr13	63447753	63449593	+	63449207	63449593	5pMXE	ENSMUST00000222846.2	novel	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	ENSMUSG00000021458.18	Aopep	chr13	protein_coding	aminopeptidase O
novel_NIR_5263	chr13	63448607	63448941	+	63448607	63448936	A3SS	ENSMUST00000220884.2	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.33	2	4	2	4	y	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000021458.18	Aopep	chr13	protein_coding	aminopeptidase O
novel_NIR_5264	chr13	63465074	63465167	-	63465096	63465167	A3SS	ENSMUST00000163091.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.83	5	1	5	1	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000021461.18	Fancc	chr13	protein_coding	Fanconi anemia, complementation group C
novel_NIR_5265	chr13	63471303	63472841	-	63471303	63472724	5pMXE	ENSMUST00000160336.8	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.20	6	24	6	24	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000021461.18	Fancc	chr13	protein_coding	Fanconi anemia, complementation group C
novel_NIR_5266	chr13	63471303	63472841	-	63471303	63473365	A5SS	ENSMUST00000220684.2	novel	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.15	6	34	6	34	y	0.00	0	8	0	8	n	0.00	0	15	0	15	n	0.00	0	8	0	8	n	0.00	0	20	0	20	n	0.00	0	6	0	6	n	0.08	1	11	1	11	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	ENSMUSG00000021461.18	Fancc	chr13	protein_coding	Fanconi anemia, complementation group C
novel_NIR_5267	chr13	63473440	63473844	-	63473440	63478335	A5SS	ENSMUST00000220684.2	novel	0.00	0	15	0	15	n	0.50	4	4	4	4	y	0.64	18	10	18	10	y	0.27	3	8	3	8	y	0.46	6	7	6	7	y	0.22	2	7	2	7	y	0.11	1	8	1	8	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.45	5	6	5	6	y	0.00	0	8	0	8	n	ENSMUSG00000021461.18	Fancc	chr13	protein_coding	Fanconi anemia, complementation group C
novel_NIR_5268	chr13	63695999	63699497	-	63695999	63711437	A5SS	ENSMUST00000021921.11	novel	0.00	0	12	0	12	n	-	-	-	-	-	-	0.00	0	14	0	14	n	0.04	1	22	1	22	n	0.00	0	21	0	21	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	19	0	19	n	0.00	0	3	0	3	n	0.17	2	10	2	10	y	0.00	0	4	0	4	n	0.00	0	8	0	8	n	ENSMUSG00000021466.13	Ptch1	chr13	protein_coding	patched 1
novel_NIR_5269	chr13	63695999	63710843	-	63695999	63711437	A5SS	ENSMUST00000021921.11	novel	0.00	0	12	0	12	n	-	-	-	-	-	-	0.00	0	14	0	14	n	0.00	0	22	0	22	n	0.05	1	21	1	21	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	19	0	19	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.20	2	8	2	8	y	ENSMUSG00000021466.13	Ptch1	chr13	protein_coding	patched 1
novel_NIR_5270	chr13	63708731	63711437	-	63695999	63711437	A3SS	ENSMUST00000021921.11	novel	0.29	5	12	5	12	y	-	-	-	-	-	-	0.00	0	14	0	14	n	0.00	0	22	0	22	n	0.00	0	21	0	21	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	19	0	19	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	ENSMUSG00000021466.13	Ptch1	chr13	protein_coding	patched 1
novel_NIR_5271	chr13	64015245	64016840	+	64013871	64016840	A5SS	ENSMUST00000095724.11	novel	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	17	0	17	n	0.00	0	17	0	17	n	0.00	0	23	0	23	n	0.00	0	7	0	7	n	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.15	2	11	2	11	y	0.00	0	21	0	21	n	0.00	0	15	0	15	n	0.00	0	15	0	15	n	ENSMUSG00000021470.20	Ercc6l2	chr13	protein_coding	excision repair cross-complementing rodent repair deficiency, complementation group 6 like 2
novel_NIR_5272	chr13	64230198	64234985	-	64224237	64234985	A3SS	ENSMUST00000222783.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033122.15	Hsd17b3	chr13	protein_coding	hydroxysteroid (17-beta) dehydrogenase 3
novel_NIR_5273	chr13	64245456	64247084	-	64245498	64247084	A3SS	ENSMUST00000220792.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000033114.12	Slc35d2	chr13	protein_coding	solute carrier family 35, member D2
novel_NIR_5274	chr13	64245459	64247084	-	64245498	64247084	A3SS	ENSMUST00000220792.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000033114.12	Slc35d2	chr13	protein_coding	solute carrier family 35, member D2
novel_NIR_5275	chr13	64268495	64269246	-	64268495	64277000	A5SS	ENSMUST00000222794.2	novel	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000033114.12	Slc35d2	chr13	protein_coding	solute carrier family 35, member D2
novel_NIR_5276	chr13	64270166	64275606	-	64270166	64274565	A5SS&ES	ENSMUST00000223461.2	novel	0.00	0	1	0	1	n	0.00	0	6	0	6	n	-	-	-	-	-	-	1.00	7	0	7	0	y	0.89	8	1	8	1	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000033114.12	Slc35d2	chr13	protein_coding	solute carrier family 35, member D2
novel_NIR_5277	chr13	64270166	64275606	-	64270166	64277000	A5SS	ENSMUST00000099441.6	novel	0.00	0	33	0	33	n	0.00	0	31	0	31	n	0.00	0	31	0	31	n	0.17	7	35	7	35	y	0.14	8	48	8	48	n	0.03	1	37	1	37	n	0.02	1	59	1	59	n	0.03	1	32	1	32	n	0.13	5	34	5	34	n	0.09	5	50	5	50	n	0.00	0	36	0	36	n	0.04	2	54	2	54	n	ENSMUSG00000033114.12	Slc35d2	chr13	protein_coding	solute carrier family 35, member D2
novel_NIR_5278	chr13	64293494	64295296	-	64293494	64297884	A5SS	ENSMUST00000134136.2	novel	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.33	2	4	2	4	n	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	ENSMUSG00000044934.14	Zfp367	chr13	protein_coding	zinc finger protein 367
novel_NIR_5279	chr13	64293494	64295296	-	64293494	64300203	A5SS	ENSMUST00000152644.9	novel	0.12	1	7	1	7	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.20	2	8	2	8	y	0.14	1	6	1	6	n	0.29	2	5	2	5	y	0.12	1	7	1	7	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	ENSMUSG00000044934.14	Zfp367	chr13	protein_coding	zinc finger protein 367
novel_NIR_5280	chr13	64293494	64295296	-	64293494	64300414	A5SS	ENSMUST00000059817.12	novel	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	ENSMUSG00000044934.14	Zfp367	chr13	protein_coding	zinc finger protein 367
novel_NIR_5281	chr13	64293494	64299906	-	64293494	64297884	5pMXE	ENSMUST00000134136.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.50	2	2	2	2	y	0.00	0	4	0	4	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.33	3	6	3	6	y	ENSMUSG00000044934.14	Zfp367	chr13	protein_coding	zinc finger protein 367
novel_NIR_5282	chr13	64293494	64299906	-	64293494	64300203	A5SS	ENSMUST00000152644.9	novel	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.22	2	7	2	7	y	0.33	2	4	2	4	y	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.20	2	8	2	8	y	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.33	3	6	3	6	y	ENSMUSG00000044934.14	Zfp367	chr13	protein_coding	zinc finger protein 367
novel_NIR_5283	chr13	64293494	64299906	-	64293494	64300414	A5SS	ENSMUST00000059817.12	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.67	2	1	2	1	y	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	3	6	3	6	y	ENSMUSG00000044934.14	Zfp367	chr13	protein_coding	zinc finger protein 367
novel_NIR_5284	chr13	64297922	64300203	-	64293494	64300203	A3SS	ENSMUST00000152644.9	novel	0.00	0	7	0	7	n	0.25	1	3	1	3	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.17	1	5	1	5	n	0.00	0	7	0	7	n	0.25	1	3	1	3	n	0.33	3	6	3	6	y	ENSMUSG00000044934.14	Zfp367	chr13	protein_coding	zinc finger protein 367
novel_NIR_5285	chr13	64310148	64317833	+	64310148	64311051	3pMXE	ENSMUST00000221264.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.43	3	4	3	4	y	ENSMUSG00000021476.10	Habp4	chr13	protein_coding	hyaluronic acid binding protein 4
novel_NIR_5286	chr13	64331835	64332387	+	64330092	64332387	A5SS	ENSMUST00000021929.10	novel	0.13	23	158	23	158	n	0.08	16	180	16	180	n	0.17	27	128	27	128	y	0.06	16	259	16	259	n	0.07	17	229	17	229	n	0.13	16	105	16	105	n	0.12	33	239	33	239	n	0.16	18	98	18	98	y	0.09	16	169	16	169	n	0.12	39	279	39	279	n	0.07	18	234	18	234	n	0.06	21	309	21	309	n	ENSMUSG00000021476.10	Habp4	chr13	protein_coding	hyaluronic acid binding protein 4
novel_NIR_5287	chr13	64349262	64353312	-	64344489	64353312	A3SS	ENSMUST00000222713.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000033102.16	Cdc14b	chr13	protein_coding	CDC14 cell division cycle 14B
novel_NIR_5288	chr13	64349262	64353312	-	64349262	64353085	A5SS&ES	ENSMUST00000221139.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.22	2	7	2	7	y	ENSMUSG00000033102.16	Cdc14b	chr13	protein_coding	CDC14 cell division cycle 14B
novel_NIR_5289	chr13	64349262	64353312	-	64349262	64356921	A5SS	ENSMUST00000221634.2	novel	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.22	2	7	2	7	y	ENSMUSG00000033102.16	Cdc14b	chr13	protein_coding	CDC14 cell division cycle 14B
novel_NIR_5290	chr13	64397046	64414256	+	64397017	64414256	A5SS	ENSMUST00000222277.2	novel	0.17	2	10	2	10	y	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	26	0	26	n	0.00	0	17	0	17	n	0.00	0	8	0	8	n	0.00	0	21	0	21	n	0.00	0	9	0	9	n	0.09	1	10	1	10	n	0.05	1	20	1	20	n	0.05	1	20	1	20	n	0.00	0	19	0	19	n	ENSMUSG00000097101.4	1810034E14Rik	chr13	lncRNA	RIKEN cDNA 1810034E14 gene
novel_NIR_5291	chr13	64414363	64425195	+	64414363	64415783	3pMXE	ENSMUST00000189419.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000097101.4	1810034E14Rik	chr13	lncRNA	RIKEN cDNA 1810034E14 gene
novel_NIR_5292	chr13	64414363	64425195	+	64414363	64419227	3pMXE	ENSMUST00000222277.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000097101.4	1810034E14Rik	chr13	lncRNA	RIKEN cDNA 1810034E14 gene
novel_NIR_5293	chr13	64437193	64456636	-	64423670	64456636	A3SS	ENSMUST00000221118.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	ENSMUSG00000021482.11	Prxl2c	chr13	protein_coding	peroxiredoxin like 2C
novel_NIR_5294	chr13	64437193	64456636	-	64440042	64456636	3pMXE	ENSMUST00000220895.2	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	18	0	18	n	0.20	1	4	1	4	n	0.20	2	8	2	8	y	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.22	2	7	2	7	y	0.00	0	5	0	5	n	ENSMUSG00000021482.11	Prxl2c	chr13	protein_coding	peroxiredoxin like 2C
novel_NIR_5295	chr13	64440042	64444942	-	64440042	64456636	A5SS	ENSMUST00000220895.2	novel	0.25	2	6	2	6	y	0.00	0	2	0	2	n	0.18	4	18	4	18	y	0.00	0	4	0	4	n	0.11	1	8	1	8	n	0.14	1	6	1	6	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.43	3	4	3	4	n	0.33	1	2	1	2	n	0.12	1	7	1	7	n	0.50	5	5	5	5	n	ENSMUSG00000021482.11	Prxl2c	chr13	protein_coding	peroxiredoxin like 2C
novel_NIR_5296	chr13	64440042;64445195	64444942;64456636	-	64440042	64456636	cassetteExon	ENSMUST00000220895.2	novel	0.14	1.0	6	2;0	6	n	0.00	0.0	2	0;0	2	n	0.10	2.0	18	4;0	18	n	0.20	1.0	4	0;2	4	n	0.06	0.5	8	1;0	8	n	0.08	0.5	6	1;0	6	n	0.26	2.5	7	0;5	7	n	0.00	0.0	5	0;0	5	n	0.38	2.5	4	3;2	4	y	0.64	3.5	2	1;6	2	n	0.07	0.5	7	1;0	7	n	0.44	4.0	5	5;3	5	y	ENSMUSG00000021482.11	Prxl2c	chr13	protein_coding	peroxiredoxin like 2C
novel_NIR_5297	chr13	64445195	64456636	-	64423670	64456636	A3SS	ENSMUST00000221118.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.67	2	1	2	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	5	0	5	0	y	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.75	6	2	6	2	y	0.00	0	2	0	2	n	0.60	3	2	3	2	y	ENSMUSG00000021482.11	Prxl2c	chr13	protein_coding	peroxiredoxin like 2C
novel_NIR_5298	chr13	64445195	64456636	-	64440042	64456636	A3SS	ENSMUST00000220895.2	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	18	0	18	n	0.33	2	4	2	4	y	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.42	5	7	5	7	y	0.00	0	5	0	5	n	0.33	2	4	2	4	n	0.75	6	2	6	2	n	0.00	0	7	0	7	n	0.38	3	5	3	5	n	ENSMUSG00000021482.11	Prxl2c	chr13	protein_coding	peroxiredoxin like 2C
novel_NIR_5299	chr13	64584642	64585189	+	64584642	64585203	A3SS	ENSMUST00000021939.8	novel	0.50	4	4	4	4	y	0.33	1	2	1	2	n	0.06	1	17	1	17	n	0.17	1	5	1	5	n	0.07	1	14	1	14	n	0.00	0	11	0	11	n	0.06	1	15	1	15	n	0.00	0	16	0	16	n	0.13	2	13	2	13	n	0.00	0	11	0	11	n	0.08	1	12	1	12	n	0.00	0	20	0	20	n	ENSMUSG00000021483.9	Cdk20	chr13	protein_coding	cyclin-dependent kinase 20
novel_NIR_5300	chr13	64585326	64585405	+	64585326	64585691	A3SS	ENSMUST00000021939.8	novel	0.07	1	14	1	14	n	0.00	0	7	0	7	n	0.04	1	23	1	23	n	0.00	0	7	0	7	n	0.15	6	34	6	34	n	0.18	4	18	4	18	n	0.00	0	28	0	28	n	0.00	0	20	0	20	n	0.00	0	12	0	12	n	0.08	1	11	1	11	n	0.15	2	11	2	11	y	0.00	0	19	0	19	n	ENSMUSG00000021483.9	Cdk20	chr13	protein_coding	cyclin-dependent kinase 20
novel_NIR_5301	chr13	64585485	64585691	+	64585326	64585691	A5SS	ENSMUST00000021939.8	novel	0.00	0	14	0	14	n	0.30	3	7	3	7	y	0.00	0	23	0	23	n	0.00	0	7	0	7	n	0.08	3	34	3	34	n	0.00	0	18	0	18	n	0.03	1	28	1	28	n	0.00	0	20	0	20	n	0.00	0	12	0	12	n	0.21	3	11	3	11	n	0.00	0	11	0	11	n	0.00	0	19	0	19	n	ENSMUSG00000021483.9	Cdk20	chr13	protein_coding	cyclin-dependent kinase 20
novel_NIR_5302	chr13	65426932	65427075	+	65426801	65427075	A5SS	ENSMUST00000126879.8	novel	0.67	4	2	4	2	y	0.80	4	1	4	1	y	0.86	12	2	12	2	y	1.00	6	0	6	0	y	0.55	6	5	6	5	y	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.40	2	3	2	3	y	0.67	8	4	8	4	y	0.33	2	4	2	4	y	-	-	-	-	-	-	0.55	6	5	6	5	y	ENSMUSG00000021514.19	Zfp369	chr13	protein_coding	zinc finger protein 369
novel_NIR_5303	chr13	65426932	65427075	+	65426912	65427075	A5SS	ENSMUST00000155732.2	novel	1.00	4	0	4	0	y	0.80	4	1	4	1	y	0.92	12	1	12	1	y	1.00	6	0	6	0	y	0.67	6	3	6	3	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	8	0	8	0	y	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.86	6	1	6	1	y	ENSMUSG00000021514.19	Zfp369	chr13	protein_coding	zinc finger protein 369
novel_NIR_5304	chr13	65442298	65443877	+	65442298	65443414	A3SS&ES	ENSMUST00000130799.8	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.22	2	7	2	7	y	0.00	0	19	0	19	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.00	0	15	0	15	n	ENSMUSG00000021514.19	Zfp369	chr13	protein_coding	zinc finger protein 369
novel_NIR_5305	chr13	65442298	65443877	+	65442298;65443540	65443414;65443877	ES	ENSMUST00000126879.8	novel	0.00	0	4.0	0	5;3	n	0.00	0	1.5	0	2;1	n	0.00	0	2.5	0	1;4	n	0.21	2	7.5	2	7;8	y	0.00	0	16.0	0	19;13	n	0.00	0	5.5	0	7;4	n	0.00	0	10.5	0	10;11	n	0.00	0	6.5	0	9;4	n	0.00	0	2.0	0	3;1	n	0.00	0	6.5	0	10;3	n	0.00	0	1.5	0	1;2	n	0.00	0	11.0	0	15;7	n	ENSMUSG00000021514.19	Zfp369	chr13	protein_coding	zinc finger protein 369
novel_NIR_5306	chr13	65443536	65443877	+	65443540	65443877	A5SS	ENSMUST00000126879.8	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	7	0	7	n	ENSMUSG00000021514.19	Zfp369	chr13	protein_coding	zinc finger protein 369
novel_NIR_5307	chr13	67077136	67077949	-	67076351	67077949	A3SS	ENSMUST00000173158.8	novel	-	-	-	-	-	-	0.00	0	6	0	6	n	0.56	5	4	5	4	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.20	1	4	1	4	n	ENSMUSG00000021519.12	Mterf3	chr13	protein_coding	mitochondrial transcription termination factor 3
novel_NIR_5308	chr13	67078287	67078389	-	67078287	67079670	A5SS	ENSMUST00000172597.8	novel	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000021519.12	Mterf3	chr13	protein_coding	mitochondrial transcription termination factor 3
novel_NIR_5309	chr13	67078287	67078389	-	67078287	67080458	A5SS	ENSMUST00000173407.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000021519.12	Mterf3	chr13	protein_coding	mitochondrial transcription termination factor 3
novel_NIR_5310	chr13	67079371	67079670	-	67078287	67079670	A3SS	ENSMUST00000172597.8	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021519.12	Mterf3	chr13	protein_coding	mitochondrial transcription termination factor 3
novel_NIR_5311	chr13	67151333	67153169	-	67151333	67154138	A5SS	ENSMUST00000224483.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000114362.2	4933433G19Rik	chr13	lncRNA	RIKEN cDNA 4933433G19 gene
novel_NIR_5312	chr13	67209324	67233107	+	67209324	67221586	3pMXE	ENSMUST00000223556.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000114516.2	Gm46440	chr13	lncRNA	predicted gene, 46440
novel_NIR_5313	chr13	67209324	67233107	+	67209324	67224009	3pMXE	ENSMUST00000224641.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000114516.2	Gm46440	chr13	lncRNA	predicted gene, 46440
novel_NIR_5314	chr13	67209324	67233107	+	67209324	67239031	A3SS	ENSMUST00000223904.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000114516.2	Gm46440	chr13	lncRNA	predicted gene, 46440
novel_NIR_5315	chr13	67250887	67254203	-	67250887	67255632	A5SS	ENSMUST00000091526.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	8	0	8	0	y	1.00	2	0	2	0	y	1.00	8	0	8	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	6	0	6	0	y	1.00	4	0	4	0	y	1.00	6	0	6	0	y	ENSMUSG00000074824.4	Rslcan18	chr13	protein_coding	regulator of sex-limitation candidate 18
novel_NIR_5316	chr13	67254558	67256513	-	67250845	67256513	A3SS	ENSMUST00000186303.7	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000100235.9	Gm28557	chr13	protein_coding	predicted gene 28557
novel_NIR_5317	chr13	67321239	67324512	+	67321317	67324512	5pMXE	ENSMUST00000021997.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.67	2	1	2	1	y	0.33	1	2	1	2	n	0.50	1	1	1	1	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000058900.6	Rsl1	chr13	protein_coding	regulator of sex limited protein 1
novel_NIR_5318	chr13	67321239	67324512	+	67321372	67324512	5pMXE	ENSMUST00000225334.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.33	1	2	1	2	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000058900.6	Rsl1	chr13	protein_coding	regulator of sex limited protein 1
novel_NIR_5319	chr13	67321317	67323820	+	67321317	67324512	A3SS	ENSMUST00000021997.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.80	4	1	4	1	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000058900.6	Rsl1	chr13	protein_coding	regulator of sex limited protein 1
novel_NIR_5320	chr13	67456939	67468336	-	67466041	67468336	3pMXE	ENSMUST00000168892.9	novel	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.20	2	8	2	8	y	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	11	0	11	n	ENSMUSG00000057842.15	Zfp595	chr13	protein_coding	zinc finger protein 595
novel_NIR_5321	chr13	67463420	67464362	-	67461962	67464362	A3SS	ENSMUST00000133177.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000057842.15	Zfp595	chr13	protein_coding	zinc finger protein 595
novel_NIR_5322	chr13	67463420	67464362	-	67462973	67464362	A3SS	ENSMUST00000109735.9	novel	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.14	1	6	1	6	n	-	-	-	-	-	-	0.38	3	5	3	5	y	0.14	1	6	1	6	n	0.17	1	5	1	5	n	ENSMUSG00000057842.15	Zfp595	chr13	protein_coding	zinc finger protein 595
novel_NIR_5323	chr13	67544875	67545382	-	67544875	67547815	A5SS	ENSMUST00000224684.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	ENSMUSG00000078994.10	Zfp429	chr13	protein_coding	zinc finger protein 429
novel_NIR_5324	chr13	67544875	67545382	-	67544875	67547893	A5SS	ENSMUST00000224825.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000078994.10	Zfp429	chr13	protein_coding	zinc finger protein 429
novel_NIR_5325	chr13	67547262	67547815	-	67544875	67547815	A3SS	ENSMUST00000224684.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000078994.10	Zfp429	chr13	protein_coding	zinc finger protein 429
novel_NIR_5326	chr13	67574484	67577549	-	67574484	67579569	A5SS	ENSMUST00000057241.15	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000069206.15	Zfp874a	chr13	protein_coding	zinc finger protein 874a
novel_NIR_5327	chr13	67597595	67599435	-	67597595	67599631	A5SS	ENSMUST00000057241.15	novel	0.17	2	10	2	10	y	0.30	3	7	3	7	y	0.00	0	10	0	10	n	0.24	4	13	4	13	y	0.24	5	16	5	16	y	0.25	2	6	2	6	y	0.30	3	7	3	7	y	0.50	5	5	5	5	y	0.00	0	10	0	10	n	0.17	3	15	3	15	y	0.22	2	7	2	7	y	0.33	5	10	5	10	y	ENSMUSG00000069206.15	Zfp874a	chr13	protein_coding	zinc finger protein 874a
novel_NIR_5328	chr13	67597595	67599510	-	67597595	67599631	A5SS	ENSMUST00000057241.15	novel	0.44	8	10	8	10	y	0.50	7	7	7	7	y	0.64	18	10	18	10	y	0.63	22	13	22	13	y	0.30	7	16	7	16	y	0.33	3	6	3	6	y	0.50	7	7	7	7	y	0.55	6	5	6	5	y	0.38	6	10	6	10	y	0.32	7	15	7	15	y	0.50	7	7	7	7	y	0.69	22	10	22	10	y	ENSMUSG00000069206.15	Zfp874a	chr13	protein_coding	zinc finger protein 874a
novel_NIR_5329	chr13	67629964	67631818	-	67629964	67632260	A5SS	ENSMUST00000019572.9	novel	0.25	1	3	1	3	n	0.75	3	1	3	1	y	0.00	0	6	0	6	n	0.33	2	4	2	4	y	0.25	2	6	2	6	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.38	3	5	3	5	y	0.75	3	1	3	1	y	0.67	2	1	2	1	y	0.20	1	4	1	4	n	ENSMUSG00000059839.10	Zfp874b	chr13	protein_coding	zinc finger protein 874b
novel_NIR_5330	chr13	67629964	67632065	-	67629964	67632260	A5SS	ENSMUST00000019572.9	novel	0.00	0	3	0	3	n	0.67	2	1	2	1	y	0.00	0	6	0	6	n	0.33	2	4	2	4	y	0.25	2	6	2	6	y	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.67	2	1	2	1	y	0.50	1	1	1	1	n	0.00	0	4	0	4	n	ENSMUSG00000059839.10	Zfp874b	chr13	protein_coding	zinc finger protein 874b
novel_NIR_5331	chr13	67629964	67632139	-	67629964	67632260	A5SS	ENSMUST00000019572.9	novel	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000059839.10	Zfp874b	chr13	protein_coding	zinc finger protein 874b
novel_NIR_5332	chr13	67629976	67632065	-	67629976	67632260	A5SS	ENSMUST00000223868.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000059839.10	Zfp874b	chr13	protein_coding	zinc finger protein 874b
novel_NIR_5333	chr13	67642848	67664790	-	67642848	67648490	5pMXE	ENSMUST00000076123.12	novel	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.25	2	6	2	6	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000071291.11	Zfp58	chr13	protein_coding	zinc finger protein 58
novel_NIR_5334	chr13	67642848	67664790	-	67642848	67648530	5pMXE	ENSMUST00000171518.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000071291.11	Zfp58	chr13	protein_coding	zinc finger protein 58
novel_NIR_5335	chr13	67642848	67664790	-	67642848	67668745	A5SS	ENSMUST00000167914.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000097565.2	Gm26965	chr13	protein_coding	predicted gene, 26965
novel_NIR_5336	chr13	67694870	67700904	-	67694870	67701150	A5SS	ENSMUST00000181892.9	novel	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.33	1	2	1	2	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.20	2	8	2	8	y	0.00	0	8	0	8	n	0.00	0	9	0	9	n	ENSMUSG00000095432.10	Zfp748	chr13	protein_coding	zinc finger protein 748
novel_NIR_5337	chr13	67821807	67831496	-	67821807	67831522	A5SS	ENSMUST00000137496.10	novel	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000048280.19	Zfp738	chr13	protein_coding	zinc finger protein 738
novel_NIR_5338	chr13	67821807	67831496	-	67821807	67831552	A5SS	ENSMUST00000175821.8	novel	0.43	3	4	3	4	y	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	ENSMUSG00000048280.19	Zfp738	chr13	protein_coding	zinc finger protein 738
novel_NIR_5339	chr13	67821807	67831496	-	67821807	67834537	A5SS	ENSMUST00000110973.3	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000048280.19	Zfp738	chr13	protein_coding	zinc finger protein 738
novel_NIR_5340	chr13	67862144	67872307	-	67859126	67872307	A3SS	ENSMUST00000130891.3	novel	0.00	0	1	0	1	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.50	2	2	2	2	y	ENSMUSG00000071281.13	Zfp65	chr13	protein_coding	zinc finger protein 65
novel_NIR_5341	chr13	67862144	67872307	-	67869664	67872307	A3SS&ES	ENSMUST00000127979.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	ENSMUSG00000071281.13	Zfp65	chr13	protein_coding	zinc finger protein 65
novel_NIR_5342	chr13	67875623	67877180	-	67859126	67877180	A3SS	ENSMUST00000073157.15	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.11	1	8	1	8	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000071281.13	Zfp65	chr13	protein_coding	zinc finger protein 65
novel_NIR_5343	chr13	67899801	67901107	+	67877821	67901107	A5SS	ENSMUST00000143812.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000044081.8	Zfp85os	chr13	lncRNA	zinc finger protein 85, opposite strand
novel_NIR_5344	chr13	67991563	67991669	+	67981990	67991669	A5SS	ENSMUST00000222626.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	7	0	7	0	y	-	-	-	-	-	-	ENSMUSG00000058246.9	Gm10037	chr13	protein_coding	predicted gene 10037
novel_NIR_5345	chr13	67991563	67991669	+	67982009	67991669	A5SS	ENSMUST00000231606.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	7	0	7	0	y	-	-	-	-	-	-	ENSMUSG00000058246.9	Gm10037	chr13	protein_coding	predicted gene 10037
novel_NIR_5346	chr13	69648226	69648592	-	69648229	69648592	A3SS	ENSMUST00000198607.5	novel	0.17	6	29	6	29	y	0.04	1	24	1	24	n	0.07	3	40	3	40	n	0.02	1	43	1	43	n	0.00	0	33	0	33	n	0.00	0	19	0	19	n	0.00	0	37	0	37	n	0.00	0	17	0	17	n	0.00	0	32	0	32	n	0.11	6	49	6	49	n	0.00	0	46	0	46	n	0.12	5	36	5	36	n	ENSMUSG00000034575.14	Tent4a	chr13	protein_coding	terminal nucleotidyltransferase 4A
novel_NIR_5347	chr13	69661129	69662712	-	69661129	69663084	A5SS	ENSMUST00000198607.5	novel	0.00	0	26	0	26	n	0.00	0	16	0	16	n	0.17	3	15	3	15	y	0.00	0	33	0	33	n	0.00	0	30	0	30	n	0.00	0	13	0	13	n	0.00	0	16	0	16	n	0.00	0	17	0	17	n	0.00	0	11	0	11	n	0.00	0	44	0	44	n	0.00	0	24	0	24	n	0.00	0	29	0	29	n	ENSMUSG00000034575.14	Tent4a	chr13	protein_coding	terminal nucleotidyltransferase 4A
novel_NIR_5348	chr13	73476836	73478979	+	73476739	73478979	A5SS	ENSMUST00000221730.2	novel	0.00	0	2	0	2	n	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.80	4	1	4	1	y	1.00	3	0	3	0	y	0.33	2	4	2	4	y	1.00	3	0	3	0	y	ENSMUSG00000021607.10	Mrpl36	chr13	protein_coding	mitochondrial ribosomal protein L36
novel_NIR_5349	chr13	73479405	73479479	+	73479212	73479479	A5SS	ENSMUST00000222030.2	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.20	2	8	2	8	y	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.60	3	2	3	2	y	0.20	2	8	2	8	y	0.00	0	7	0	7	n	0.11	1	8	1	8	n	0.00	0	3	0	3	n	ENSMUSG00000021607.10	Mrpl36	chr13	protein_coding	mitochondrial ribosomal protein L36
novel_NIR_5350	chr13	73783335	73783539	+	73782466	73783539	A5SS	ENSMUST00000022104.9	novel	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.00	0	10	0	10	n	0.12	1	7	1	7	n	-	-	-	-	-	-	0.18	2	9	2	9	y	0.14	1	6	1	6	n	0.29	2	5	2	5	y	0.00	0	7	0	7	n	1.00	3	0	3	0	y	0.67	6	3	6	3	y	ENSMUSG00000021611.10	Tert	chr13	protein_coding	telomerase reverse transcriptase
novel_NIR_5351	chr13	73792556	73794340	+	73792556	73794300	A3SS	ENSMUST00000022104.9	novel	0.25	4	12	4	12	y	0.14	2	12	2	12	n	0.00	0	5	0	5	n	0.16	3	16	3	16	y	0.12	2	15	2	15	n	0.25	1	3	1	3	n	0.36	4	7	4	7	y	0.38	3	5	3	5	y	0.15	2	11	2	11	y	0.27	4	11	4	11	y	0.00	0	6	0	6	n	0.11	1	8	1	8	n	ENSMUSG00000021611.10	Tert	chr13	protein_coding	telomerase reverse transcriptase
novel_NIR_5352	chr13	73796190	73796446	+	73796190	73796407	A3SS	ENSMUST00000022104.9	novel	0.00	0	26	0	26	n	0.15	2	11	2	11	y	0.00	0	5	0	5	n	0.00	0	16	0	16	n	0.12	3	21	3	21	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.05	1	18	1	18	n	0.00	0	21	0	21	n	0.00	0	14	0	14	n	0.00	0	27	0	27	n	ENSMUSG00000021611.10	Tert	chr13	protein_coding	telomerase reverse transcriptase
novel_NIR_5353	chr13	73881456	73910974	+	73881456	73932638	A3SS	ENSMUST00000222742.2	novel	0.44	4	5	4	5	y	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.56	5	4	5	4	y	0.67	10	5	10	5	y	0.00	0	3	0	3	n	0.67	2	1	2	1	y	0.60	3	2	3	2	y	1.00	7	0	7	0	y	0.57	8	6	8	6	y	0.33	2	4	2	4	y	0.50	7	7	7	7	y	ENSMUSG00000017756.10	Slc12a7	chr13	protein_coding	solute carrier family 12, member 7
novel_NIR_5354	chr13	73912009	73912264	+	73912009	73932638	A3SS	ENSMUST00000017900.9	novel	0.07	3	37	3	37	n	0.12	3	23	3	23	n	0.00	0	33	0	33	n	0.04	2	54	2	54	n	0.18	11	50	11	50	y	0.00	0	13	0	13	n	0.12	6	42	6	42	n	0.00	0	29	0	29	n	0.33	13	26	13	26	y	0.27	20	53	20	53	y	0.18	6	27	6	27	y	0.23	9	30	9	30	y	ENSMUSG00000017756.10	Slc12a7	chr13	protein_coding	solute carrier family 12, member 7
novel_NIR_5355	chr13	73931868	73932638	+	73881456	73932638	A5SS	ENSMUST00000222742.2	novel	0.44	4	5	4	5	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.80	4	1	4	1	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.50	6	6	6	6	y	0.00	0	4	0	4	n	0.22	2	7	2	7	y	ENSMUSG00000017756.10	Slc12a7	chr13	protein_coding	solute carrier family 12, member 7
novel_NIR_5356	chr13	74088909	74090067	+	74088909	74089027	A3SS&ES	ENSMUST00000223238.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000057649.7	Brd9	chr13	protein_coding	bromodomain containing 9
novel_NIR_5357	chr13	74088909	74090067	+	74088909	74090063	A3SS	ENSMUST00000222399.2	novel	0.25	2	6	2	6	y	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.18	3	14	3	14	y	0.00	0	7	0	7	n	0.00	0	23	0	23	n	0.00	0	17	0	17	n	0.06	1	17	1	17	n	0.00	0	24	0	24	n	0.00	0	11	0	11	n	0.00	0	29	0	29	n	ENSMUSG00000057649.7	Brd9	chr13	protein_coding	bromodomain containing 9
novel_NIR_5358	chr13	74355216	74355665	-	74355216	74355942	A5SS	ENSMUST00000223045.2	novel	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.22	2	7	2	7	y	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000034152.7	Exoc3	chr13	protein_coding	exocyst complex component 3
novel_NIR_5359	chr13	74509518	74511734	-	74509518	74511192	A5SS	ENSMUST00000022064.5	novel	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	8	0	8	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000021579.5	Lrrc14b	chr13	protein_coding	leucine rich repeat containing 14B
novel_NIR_5360	chr13	74524638	74526731	-	74524681	74526731	A3SS	ENSMUST00000223163.3	novel	-	-	-	-	-	-	0.60	3	2	3	2	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.00	0	1	0	1	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000069184.5	Zfp72	chr13	protein_coding	zinc finger protein 72
novel_NIR_5361	chr13	74631062	74641992	-	74631062	74632018	A5SS&ES	ENSMUST00000221173.2	novel	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	28	0	28	n	0.00	0	9	0	9	n	0.00	0	20	0	20	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.18	2	9	2	9	y	ENSMUSG00000069208.10	Zfp825	chr13	protein_coding	zinc finger protein 825
novel_NIR_5362	chr13	74631062	74641992	-	74631062	74641969	A5SS	ENSMUST00000202645.4	novel	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.00	0	17	0	17	n	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.18	2	9	2	9	y	ENSMUSG00000069208.10	Zfp825	chr13	protein_coding	zinc finger protein 825
novel_NIR_5363	chr13	74632075	74641969	-	74631062	74641969	A3SS	ENSMUST00000202645.4	novel	0.20	1	4	1	4	n	0.14	1	6	1	6	n	0.11	2	16	2	16	n	0.00	0	17	0	17	n	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.15	2	11	2	11	y	0.06	1	15	1	15	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	ENSMUSG00000069208.10	Zfp825	chr13	protein_coding	zinc finger protein 825
novel_NIR_5364	chr13	74632174	74641969	-	74631062	74641969	A3SS	ENSMUST00000202645.4	novel	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.00	0	17	0	17	n	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.15	2	11	2	11	y	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	ENSMUSG00000069208.10	Zfp825	chr13	protein_coding	zinc finger protein 825
novel_NIR_5365	chr13	74659601	74660552	-	74659601	74670473	A5SS	ENSMUST00000220784.2	novel	0.17	1	5	1	5	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.18	2	9	2	9	y	0.00	0	10	0	10	n	0.00	0	17	0	17	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	ENSMUSG00000113019.2	Gm47467	chr13	lncRNA	predicted gene, 47467
novel_NIR_5366	chr13	74659601	74669805	-	74659601	74670473	A5SS	ENSMUST00000220784.2	novel	0.17	1	5	1	5	n	0.00	0	1	0	1	n	0.43	3	4	3	4	y	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.29	2	5	2	5	y	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.11	2	17	2	17	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	ENSMUSG00000113019.2	Gm47467	chr13	lncRNA	predicted gene, 47467
novel_NIR_5367	chr13	74669897	74670473	-	74659601	74670473	A3SS	ENSMUST00000220784.2	novel	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.30	3	7	3	7	y	0.11	1	8	1	8	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.06	1	17	1	17	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	ENSMUSG00000113019.2	Gm47467	chr13	lncRNA	predicted gene, 47467
novel_NIR_5368	chr13	74702529	74703827	-	74702529	74703926	A5SS	ENSMUST00000221408.2	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.29	2	5	2	5	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000113047.2	Gm47469	chr13	lncRNA	predicted gene, 47469
novel_NIR_5369	chr13	74758494	74760843	-	74758445	74760843	A3SS	ENSMUST00000222003.2	novel	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	19	0	19	n	0.50	2	2	2	2	y	0.00	0	6	0	6	n	ENSMUSG00000113204.2	Gm46430	chr13	lncRNA	predicted gene, 46430
novel_NIR_5370	chr13	74758494	74760843	-	74759440	74760843	A3SS&ES	ENSMUST00000222254.2	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	ENSMUSG00000113204.2	Gm46430	chr13	lncRNA	predicted gene, 46430
novel_NIR_5371	chr13	74758494	74760843	-	74759506	74760843	A3SS&ES	ENSMUST00000220478.2	novel	0.00	0	8	0	8	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.67	2	1	2	1	y	-	-	-	-	-	-	ENSMUSG00000113204.2	Gm46430	chr13	lncRNA	predicted gene, 46430
novel_NIR_5372	chr13	74761067	74765509	-	74761067	74765321	5pMXE	ENSMUST00000222254.2	novel	0.00	0	7	0	7	n	0.17	1	5	1	5	n	0.09	1	10	1	10	n	0.00	0	8	0	8	n	0.08	1	12	1	12	n	0.09	1	10	1	10	n	0.00	0	11	0	11	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.05	1	19	1	19	n	0.00	0	9	0	9	n	0.20	3	12	3	12	y	ENSMUSG00000113204.2	Gm46430	chr13	lncRNA	predicted gene, 46430
novel_NIR_5373	chr13	74761067	74765509	-	74765406	74765509	A3SS&ES	ENSMUST00000221389.2	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.43	3	4	3	4	y	ENSMUSG00000113204.2	Gm46430	chr13	lncRNA	predicted gene, 46430
novel_NIR_5374	chr13	74788012	74789660	+	74788012	74805752	A3SS	ENSMUST00000221822.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021583.8	Erap1	chr13	protein_coding	endoplasmic reticulum aminopeptidase 1
novel_NIR_5375	chr13	74788012	74794406	+	74788012	74805752	A3SS	ENSMUST00000221822.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021583.8	Erap1	chr13	protein_coding	endoplasmic reticulum aminopeptidase 1
novel_NIR_5376	chr13	74788056;74789701	74789660;74794290	+	74788056	74794290	cassetteExon	ENSMUST00000221526.2	novel	1.00	1.0	0	0;2	0	n	1.00	0.5	0	0;1	0	n	1.00	1.5	0	0;3	0	n	0.71	5.0	2	2;8	2	y	0.38	2.5	4	1;4	4	n	-	-	-	-	-	-	0.50	2.0	2	0;4	2	n	-	-	-	-	-	-	0.20	0.5	2	0;1	2	n	0.54	3.5	3	1;6	3	n	0.08	0.5	6	0;1	6	n	0.56	2.5	2	1;4	2	n	ENSMUSG00000021583.8	Erap1	chr13	protein_coding	endoplasmic reticulum aminopeptidase 1
novel_NIR_5377	chr13	74788258	74794290	+	74788056	74794290	A5SS	ENSMUST00000221526.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	4	0	4	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	ENSMUSG00000021583.8	Erap1	chr13	protein_coding	endoplasmic reticulum aminopeptidase 1
novel_NIR_5378	chr13	74789701	74794290	+	74788056	74794290	A5SS	ENSMUST00000221526.2	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.80	8	2	8	2	n	0.50	4	4	4	4	n	-	-	-	-	-	-	0.67	4	2	4	2	y	-	-	-	-	-	-	0.33	1	2	1	2	n	0.67	6	3	6	3	n	0.14	1	6	1	6	n	0.67	4	2	4	2	n	ENSMUSG00000021583.8	Erap1	chr13	protein_coding	endoplasmic reticulum aminopeptidase 1
novel_NIR_5379	chr13	74848835	74849085	-	74848835	74850677	A5SS	ENSMUST00000223126.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000021585.11	Cast	chr13	protein_coding	calpastatin
novel_NIR_5380	chr13	75898203	75904394	+	75873119	75904394	A5SS	ENSMUST00000220572.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	12	0	12	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	5	0	5	0	y	ENSMUSG00000001542.8	Ell2	chr13	protein_coding	elongation factor for RNA polymerase II 2
novel_NIR_5381	chr13	75898203	75904394	+	75894532	75904394	A5SS	ENSMUST00000222892.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	12	0	12	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	1.00	4	0	4	0	y	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.44	4	5	4	5	y	0.50	1	1	1	1	n	0.71	5	2	5	2	y	ENSMUSG00000001542.8	Ell2	chr13	protein_coding	elongation factor for RNA polymerase II 2
novel_NIR_5382	chr13	75901228	75904394	+	75873119	75904394	A5SS	ENSMUST00000220572.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000001542.8	Ell2	chr13	protein_coding	elongation factor for RNA polymerase II 2
novel_NIR_5383	chr13	75901228	75904394	+	75894532	75904394	A5SS	ENSMUST00000222892.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.17	1	5	1	5	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000001542.8	Ell2	chr13	protein_coding	elongation factor for RNA polymerase II 2
novel_NIR_5384	chr13	75995417	75997367	+	75995417	75997345	A3SS	ENSMUST00000223120.2	novel	1.00	14	0	14	0	y	1.00	22	0	22	0	y	0.80	4	1	4	1	y	1.00	7	0	7	0	y	1.00	29	0	29	0	y	1.00	4	0	4	0	y	1.00	11	0	11	0	y	1.00	3	0	3	0	y	1.00	11	0	11	0	y	1.00	13	0	13	0	y	1.00	7	0	7	0	y	1.00	14	0	14	0	y	ENSMUSG00000021591.9	Glrx	chr13	protein_coding	glutaredoxin
novel_NIR_5385	chr13	75995417	75997367	+	75995417	75997363	A3SS	ENSMUST00000022082.8	novel	0.11	14	111	14	111	n	0.17	22	105	22	105	y	0.08	4	46	4	46	n	0.07	7	91	7	91	n	0.13	29	186	29	186	n	0.08	4	49	4	49	n	0.05	11	212	11	212	n	0.06	3	47	3	47	n	0.12	11	81	11	81	n	0.08	13	156	13	156	n	0.06	7	115	7	115	n	0.13	14	92	14	92	n	ENSMUSG00000021591.9	Glrx	chr13	protein_coding	glutaredoxin
novel_NIR_5386	chr13	76256402	76259853	+	76256402	76259792	A3SS	ENSMUST00000091466.4	novel	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.13	2	13	2	13	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.18	2	9	2	9	y	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	ENSMUSG00000033991.10	Ttc37	chr13	protein_coding	tetratricopeptide repeat domain 37
novel_NIR_5387	chr13	77199413	77199788	-	77199413	77214719	A5SS	ENSMUST00000151524.9	novel	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000021597.17	Slf1	chr13	protein_coding	SMC5-SMC6 complex localization factor 1
novel_NIR_5388	chr13	77331888	77340677	+	77331888	77340673	A3SS	ENSMUST00000168779.3	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	ENSMUSG00000071252.7	2210408I21Rik	chr13	protein_coding	RIKEN cDNA 2210408I21 gene
novel_NIR_5389	chr13	77482482	77486821	+	77482482	77760646	A3SS	ENSMUST00000168779.3	novel	0.33	1	2	1	2	n	0.20	1	4	1	4	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	ENSMUSG00000071252.7	2210408I21Rik	chr13	protein_coding	RIKEN cDNA 2210408I21 gene
novel_NIR_5390	chr13	78050994	78147705	+	78050994	78100104	3pMXE	ENSMUST00000225623.2	novel	0.08	1	11	1	11	n	0.00	0	1	0	1	n	0.15	2	11	2	11	y	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.17	1	5	1	5	n	0.00	0	13	0	13	n	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.00	0	18	0	18	n	0.17	1	5	1	5	n	0.00	0	11	0	11	n	ENSMUSG00000064138.15	Fam172a	chr13	protein_coding	family with sequence similarity 172, member A
novel_NIR_5391	chr13	78311520	78311632	+	78154591	78311632	A5SS	ENSMUST00000163257.9	novel	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.05	1	19	1	19	n	0.00	0	10	0	10	n	0.25	2	6	2	6	y	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.00	0	4	0	4	n	0.00	0	15	0	15	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	ENSMUSG00000064138.15	Fam172a	chr13	protein_coding	family with sequence similarity 172, member A
novel_NIR_5392	chr13	81035387	81035525	+	81034262	81035525	A5SS	ENSMUST00000161441.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000074794.11	Arrdc3	chr13	protein_coding	arrestin domain containing 3
novel_NIR_5393	chr13	81039343	81039562	+	81039343	81039569	A3SS	ENSMUST00000159690.8	novel	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.09	1	10	1	10	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.25	2	6	2	6	y	ENSMUSG00000074794.11	Arrdc3	chr13	protein_coding	arrestin domain containing 3
novel_NIR_5394	chr13	81431591	81499626	-	81431591	81490867	5pMXE	ENSMUST00000156631.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000069170.15	Adgrv1	chr13	protein_coding	adhesion G protein-coupled receptor V1
novel_NIR_5395	chr13	81431591	81499626	-	81431591	81491221	5pMXE	ENSMUST00000128120.2	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000069170.15	Adgrv1	chr13	protein_coding	adhesion G protein-coupled receptor V1
novel_NIR_5396	chr13	81431591	81499626	-	81431591	81499630	A5SS	ENSMUST00000224088.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.80	4	1	4	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000069170.15	Adgrv1	chr13	protein_coding	adhesion G protein-coupled receptor V1
novel_NIR_5397	chr13	81431591	81499626	-	81431591	81522301	A5SS	ENSMUST00000095585.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000069170.15	Adgrv1	chr13	protein_coding	adhesion G protein-coupled receptor V1
novel_NIR_5398	chr13	81813388	81816710	+	81813388	81817280	A3SS	ENSMUST00000224300.2	novel	0.11	3	24	3	24	n	0.00	0	18	0	18	n	0.12	7	50	7	50	n	0.28	7	18	7	18	y	0.13	6	40	6	40	n	0.24	11	34	11	34	y	0.17	5	24	5	24	n	0.26	7	20	7	20	n	0.00	0	19	0	19	n	0.17	4	19	4	19	n	0.31	5	11	5	11	y	0.10	2	18	2	18	n	ENSMUSG00000035840.8	Lysmd3	chr13	protein_coding	LysM, putative peptidoglycan-binding, domain containing 3
novel_NIR_5399	chr13	81813388	81816710	+	81813388	81817339	A3SS	ENSMUST00000049055.8	novel	0.25	3	9	3	9	n	0.00	0	2	0	2	n	0.39	7	11	7	11	n	0.54	7	6	7	6	y	0.50	6	6	6	6	y	0.58	11	8	11	8	y	0.83	5	1	5	1	y	0.58	7	5	7	5	y	0.00	0	6	0	6	n	0.36	4	7	4	7	y	0.45	5	6	5	6	y	0.40	2	3	2	3	n	ENSMUSG00000035840.8	Lysmd3	chr13	protein_coding	LysM, putative peptidoglycan-binding, domain containing 3
novel_NIR_5400	chr13	81813388	81816710	+	81813388	81817483	A3SS	ENSMUST00000224420.2	novel	0.60	3	2	3	2	y	-	-	-	-	-	-	0.88	7	1	7	1	n	0.88	7	1	7	1	y	0.75	6	2	6	2	y	0.85	11	2	11	2	y	0.62	5	3	5	3	y	0.70	7	3	7	3	y	0.00	0	3	0	3	n	0.50	4	4	4	4	y	1.00	5	0	5	0	y	1.00	2	0	2	0	y	ENSMUSG00000035840.8	Lysmd3	chr13	protein_coding	LysM, putative peptidoglycan-binding, domain containing 3
novel_NIR_5401	chr13	81813388;81816904	81816710;81817280	+	81813388	81817280	cassetteExon	ENSMUST00000224300.2	novel	0.09	2.5	24	3;2	24	n	0.03	0.5	18	0;1	18	n	0.12	7.0	50	7;7	50	n	0.16	3.5	18	7;0	18	n	0.13	6.0	40	6;6	40	n	0.14	5.5	34	11;0	34	n	0.11	3.0	24	5;1	24	n	0.20	5.0	20	7;3	20	y	0.00	0.0	19	0;0	19	n	0.21	5.0	19	4;6	19	y	0.19	2.5	11	5;0	11	n	0.14	3.0	18	2;4	18	n	ENSMUSG00000035840.8	Lysmd3	chr13	protein_coding	LysM, putative peptidoglycan-binding, domain containing 3
novel_NIR_5402	chr13	84408359	84430928	+	84408359	84432104	A3SS	ENSMUST00000224501.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035762.12	Tmem161b	chr13	protein_coding	transmembrane protein 161B
novel_NIR_5403	chr13	84420446	84430634	+	84420446	84430830	A3SS	ENSMUST00000057495.10	novel	0.12	1	7	1	7	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.23	3	10	3	10	y	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	15	0	15	n	ENSMUSG00000035762.12	Tmem161b	chr13	protein_coding	transmembrane protein 161B
novel_NIR_5404	chr13	84420446	84430634	+	84420446	84430868	A3SS	ENSMUST00000225069.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	3	3	3	3	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035762.12	Tmem161b	chr13	protein_coding	transmembrane protein 161B
novel_NIR_5405	chr13	85357003	85359973	+	85359474	85359973	5pMXE	ENSMUST00000172029.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021548.11	Ccnh	chr13	protein_coding	cyclin H
novel_NIR_5406	chr13	85360033	85371948	+	85360033	85371330	3pMXE	ENSMUST00000163713.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000021548.11	Ccnh	chr13	protein_coding	cyclin H
novel_NIR_5407	chr13	85360033	85392920	+	85360033	85371330	3pMXE	ENSMUST00000163713.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021548.11	Ccnh	chr13	protein_coding	cyclin H
novel_NIR_5408	chr13	8750339	8751616	+	8747824	8751616	A5SS	ENSMUST00000064473.13	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000052551.17	Adarb2	chr13	protein_coding	adenosine deaminase, RNA-specific, B2
novel_NIR_5409	chr13	8751767	8752019	+	8751767	8763636	A3SS	ENSMUST00000064473.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000052551.17	Adarb2	chr13	protein_coding	adenosine deaminase, RNA-specific, B2
novel_NIR_5410	chr13	8902367	8903706	-	8899705	8903706	A3SS	ENSMUST00000054251.13	novel	0.83	5	1	5	1	y	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.27	3	8	3	8	y	0.06	1	15	1	15	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.09	1	10	1	10	n	0.10	1	9	1	9	n	0.40	6	9	6	9	y	0.00	0	12	0	12	n	0.00	0	10	0	10	n	ENSMUSG00000021147.18	Wdr37	chr13	protein_coding	WD repeat domain 37
novel_NIR_5411	chr13	8902367	8903706	-	8903013	8903706	3pMXE	ENSMUST00000176587.2	novel	0.83	5	1	5	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021147.18	Wdr37	chr13	protein_coding	WD repeat domain 37
novel_NIR_5412	chr13	9052153	9065513	-	9052153	9055509	A5SS&ES	ENSMUST00000221989.2	novel	0.00	0	7	0	7	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	10	0	10	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.22	2	7	2	7	y	-	-	-	-	-	-	0.00	0	5	0	5	n	0.09	1	10	1	10	n	0.00	0	16	0	16	n	0.17	3	15	3	15	y	ENSMUSG00000113543.2	Gm36264	chr13	lncRNA	predicted gene, 36264
novel_NIR_5413	chr13	9052153	9065513	-	9052153	9124175	A5SS	ENSMUST00000221672.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	5	0	5	n	1.00	1	0	1	0	n	0.00	0	6	0	6	n	0.60	3	2	3	2	y	ENSMUSG00000113543.2	Gm36264	chr13	lncRNA	predicted gene, 36264
novel_NIR_5414	chr13	9052153;9123955	9123812;9124175	-	9052153	9124175	cassetteExon	ENSMUST00000221672.2	novel	1.00	2.0	0	1;3	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1.0	1	0;2	1	n	1.00	2.5	0	0;5	0	n	-	-	-	-	-	-	0.33	1.5	3	0;3	3	n	-	-	-	-	-	-	0.29	2.0	5	0;4	5	n	-	-	-	-	-	-	0.52	6.5	6	2;11	6	y	0.75	6.0	2	0;12	2	n	ENSMUSG00000113543.2	Gm36264	chr13	lncRNA	predicted gene, 36264
novel_NIR_5415	chr13	9052153;9123955	9123812;9124175	-	9052153;9058475	9055509;9124175	MXE	ENSMUST00000221989.2	novel	0.31	2.0	4.5	1;3	7;2	n	0.00	0.0	0.5	0;0	1;0	n	-	-	-	-	-	-	0.15	1.0	5.5	0;2	10;1	n	0.62	2.5	1.5	0;5	3;0	n	-	-	-	-	-	-	0.25	1.5	4.5	0;3	7;2	n	-	-	-	-	-	-	0.44	2.0	2.5	0;4	5;0	n	0.00	0.0	5.0	0;0	10;0	n	0.39	6.5	10.0	2;11	16;4	y	0.38	6.0	10.0	0;12	15;5	n	ENSMUSG00000113543.2	Gm36264	chr13	lncRNA	predicted gene, 36264
novel_NIR_5416	chr13	9058475	9065513	-	9058475	9124175	A5SS	ENSMUST00000221989.2	novel	0.50	2	2	2	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	n	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	5	0	5	n	ENSMUSG00000113543.2	Gm36264	chr13	lncRNA	predicted gene, 36264
novel_NIR_5417	chr13	9123955	9124175	-	9052153	9124175	A3SS	ENSMUST00000221672.2	novel	1.00	3	0	3	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	1.00	5	0	5	0	y	-	-	-	-	-	-	0.50	3	3	3	3	y	-	-	-	-	-	-	0.44	4	5	4	5	y	-	-	-	-	-	-	0.65	11	6	11	6	n	0.86	12	2	12	2	y	ENSMUSG00000113543.2	Gm36264	chr13	lncRNA	predicted gene, 36264
novel_NIR_5418	chr13	9123955	9124175	-	9058475	9124175	A3SS	ENSMUST00000221989.2	novel	0.60	3	2	3	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	1.00	5	0	5	0	y	-	-	-	-	-	-	0.60	3	2	3	2	y	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	0.73	11	4	11	4	n	0.71	12	5	12	5	y	ENSMUSG00000113543.2	Gm36264	chr13	lncRNA	predicted gene, 36264
novel_NIR_5419	chr13	91632893	91672704	+	91609367	91672704	A5SS	ENSMUST00000004094.15	novel	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.20	2	8	2	8	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	16	0	16	n	ENSMUSG00000003992.16	Ssbp2	chr13	protein_coding	single-stranded DNA binding protein 2
novel_NIR_5420	chr13	9167909	9168002	+	9144216	9168002	A5SS	ENSMUST00000190041.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	ENSMUSG00000033499.15	Larp4b	chr13	protein_coding	La ribonucleoprotein domain family, member 4B
novel_NIR_5421	chr13	91945373	91945604	-	91945373	91948730	A5SS	ENSMUST00000070886.9	novel	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	4	0	4	n	ENSMUSG00000021621.16	Zcchc9	chr13	protein_coding	zinc finger, CCHC domain containing 9
novel_NIR_5422	chr13	91945373	91946742	-	91945373	91948730	A5SS	ENSMUST00000070886.9	novel	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000021621.16	Zcchc9	chr13	protein_coding	zinc finger, CCHC domain containing 9
novel_NIR_5423	chr13	9219024	9220688	+	9216517	9220688	A5SS	ENSMUST00000188939.7	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033499.15	Larp4b	chr13	protein_coding	La ribonucleoprotein domain family, member 4B
novel_NIR_5424	chr13	92645973	92646509	-	92645554	92646509	A3SS	ENSMUST00000022217.9	novel	0.00	0	10	0	10	n	0.33	1	2	1	2	n	0.00	0	8	0	8	n	0.14	1	6	1	6	n	0.00	0	12	0	12	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.11	1	8	1	8	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.33	2	4	2	4	y	0.00	0	9	0	9	n	ENSMUSG00000021706.15	Zfyve16	chr13	protein_coding	zinc finger, FYVE domain containing 16
novel_NIR_5425	chr13	92983241	92983326	+	92982205	92983326	A5SS	ENSMUST00000224368.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	1.00	1	0	1	0	n	ENSMUSG00000021704.9	Mtx3	chr13	protein_coding	metaxin 3
novel_NIR_5426	chr13	92983241	92983369	+	92982205	92983369	A5SS	ENSMUST00000223719.2	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.15	3	17	3	17	y	1.00	1	0	1	0	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.43	3	4	3	4	y	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	ENSMUSG00000021704.9	Mtx3	chr13	protein_coding	metaxin 3
novel_NIR_5427	chr13	92984228	92984333	+	92984228	92984325	A3SS	ENSMUST00000223719.2	novel	0.00	0	5	0	5	n	0.20	2	8	2	8	y	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.00	0	17	0	17	n	ENSMUSG00000021704.9	Mtx3	chr13	protein_coding	metaxin 3
novel_NIR_5428	chr13	92984401	92985494	+	92984401	92985426	A3SS	ENSMUST00000076169.4	novel	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.27	3	8	3	8	y	0.50	3	3	3	3	y	1.00	1	0	1	0	n	0.20	1	4	1	4	n	0.33	2	4	2	4	y	0.17	1	5	1	5	n	0.00	0	8	0	8	n	0.40	4	6	4	6	y	0.20	2	8	2	8	y	ENSMUSG00000021704.9	Mtx3	chr13	protein_coding	metaxin 3
novel_NIR_5429	chr13	92984401	92985505	+	92984401	92985426	A3SS	ENSMUST00000076169.4	novel	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.20	2	8	2	8	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.14	1	6	1	6	n	0.00	0	8	0	8	n	ENSMUSG00000021704.9	Mtx3	chr13	protein_coding	metaxin 3
novel_NIR_5430	chr13	92985583	92985933	+	92985583	92986798	A3SS	ENSMUST00000076169.4	novel	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.40	2	3	2	3	y	0.20	1	4	1	4	n	0.25	2	6	2	6	n	0.00	0	2	0	2	n	0.57	4	3	4	3	n	1.00	1	0	1	0	n	0.50	3	3	3	3	n	0.22	2	7	2	7	n	0.00	0	1	0	1	n	0.38	3	5	3	5	n	ENSMUSG00000021704.9	Mtx3	chr13	protein_coding	metaxin 3
novel_NIR_5431	chr13	92985583	92989292	+	92985583;92986886	92986798;92989292	ES	ENSMUST00000076169.4	novel	0.00	0	3.0	0	2;4	n	0.00	0	2.0	0	4;0	n	0.00	0	5.0	0	3;7	n	0.20	2	8.0	2	4;12	y	0.00	0	9.5	0	6;13	n	0.00	0	2.5	0	2;3	n	0.00	0	7.5	0	3;12	n	0.33	1	2.0	1	0;4	n	0.00	0	9.5	0	3;16	n	0.15	2	11.0	2	7;15	y	0.17	1	5.0	1	1;9	n	0.32	4	8.5	4	5;12	y	ENSMUSG00000021704.9	Mtx3	chr13	protein_coding	metaxin 3
novel_NIR_5432	chr13	92985583;92986031	92985933;92986798	+	92985583	92986798	cassetteExon	ENSMUST00000076169.4	novel	0.33	1.0	2	1;1	2	n	0.00	0.0	4	0;0	4	n	0.25	1.0	3	2;0	3	n	0.27	1.5	4	1;2	4	n	0.40	4.0	6	2;6	6	y	0.20	0.5	2	0;1	2	n	0.57	4.0	3	4;4	3	y	1.00	1.0	0	1;1	0	n	0.54	3.5	3	3;4	3	y	0.30	3.0	7	2;4	7	y	0.60	1.5	1	0;3	1	n	0.44	4.0	5	3;5	5	y	ENSMUSG00000021704.9	Mtx3	chr13	protein_coding	metaxin 3
novel_NIR_5433	chr13	93313770	93320587	-	93313766	93320587	A3SS	ENSMUST00000224545.2	novel	0.67	4	2	4	2	y	0.67	2	1	2	1	y	0.12	1	7	1	7	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	ENSMUSG00000042167.7	Tent2	chr13	protein_coding	terminal nucleotidyltransferase 2
novel_NIR_5434	chr13	93998838	94075735	+	93998838	94008319	3pMXE	ENSMUST00000220652.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000042082.8	Arsb	chr13	protein_coding	arylsulfatase B
novel_NIR_5435	chr13	94389578	94421535	-	94389578	94401481	5pMXE	ENSMUST00000138255.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021687.15	Scamp1	chr13	protein_coding	secretory carrier membrane protein 1
novel_NIR_5436	chr13	94389578	94421535	-	94389578	94422074	A5SS	ENSMUST00000152555.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.14	2	12	2	12	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000021687.15	Scamp1	chr13	protein_coding	secretory carrier membrane protein 1
novel_NIR_5437	chr13	94389578	94431448	-	94389578	94401481	5pMXE	ENSMUST00000138255.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021687.15	Scamp1	chr13	protein_coding	secretory carrier membrane protein 1
novel_NIR_5438	chr13	94389578	94431448	-	94389578	94422074	5pMXE	ENSMUST00000152555.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.14	2	12	2	12	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.50	3	3	3	3	y	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000021687.15	Scamp1	chr13	protein_coding	secretory carrier membrane protein 1
novel_NIR_5439	chr13	94427577	94431448	-	94427577;94429305	94429185;94431448	ES	ENSMUST00000221222.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.03	1	30.0	1	31;29	n	-	-	-	-	-	-	-	-	-	-	-	-	0.20	3	12.0	3	11;13	y	0.00	0	3.5	0	5;2	n	0.00	0	6.5	0	3;10	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000114055.2	Gm32089	chr13	lncRNA	predicted gene, 32089
novel_NIR_5440	chr13	94435254	94437713	+	94435254	94437744	A3SS	ENSMUST00000220853.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000113494.2	Gm48102	chr13	lncRNA	predicted gene, 48102
novel_NIR_5441	chr13	94435254	94441324	+	94435254	94437744	3pMXE	ENSMUST00000220853.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000113494.2	Gm48102	chr13	lncRNA	predicted gene, 48102
novel_NIR_5442	chr13	94664904	94679287	+	94678956	94679287	5pMXE	ENSMUST00000220505.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021686.7	Ap3b1	chr13	protein_coding	adaptor-related protein complex 3, beta 1 subunit
novel_NIR_5443	chr13	94942607	94968868	+	94951692	94968868	A5SS&ES	ENSMUST00000220819.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.67	4	2	4	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000042043.7	Tbca	chr13	protein_coding	tubulin cofactor A
novel_NIR_5444	chr13	94942607	94968868	+	94954294	94968868	5pMXE	ENSMUST00000220825.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000042043.7	Tbca	chr13	protein_coding	tubulin cofactor A
novel_NIR_5445	chr13	95113320	95114978	+	95113097	95114978	A5SS	ENSMUST00000160115.8	novel	0.14	1	6	1	6	n	0.00	0	4	0	4	n	0.00	0	20	0	20	n	0.00	0	12	0	12	n	0.00	0	20	0	20	n	0.00	0	22	0	22	n	0.22	2	7	2	7	y	0.09	1	10	1	10	n	0.20	2	8	2	8	y	0.14	2	12	2	12	n	0.00	0	4	0	4	n	0.17	3	15	3	15	y	ENSMUSG00000042015.18	Wdr41	chr13	protein_coding	WD repeat domain 41
novel_NIR_5446	chr13	95146903	95151545	+	95146903	95149081	3pMXE	ENSMUST00000160115.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000042015.18	Wdr41	chr13	protein_coding	WD repeat domain 41
novel_NIR_5447	chr13	95146903	95151545	+	95146903	95149441	3pMXE	ENSMUST00000160409.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000042015.18	Wdr41	chr13	protein_coding	WD repeat domain 41
novel_NIR_5448	chr13	95146903	95151545	+	95146903	95149495	3pMXE	ENSMUST00000159647.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000042015.18	Wdr41	chr13	protein_coding	WD repeat domain 41
novel_NIR_5449	chr13	95974431	95978409	-	95974431	96028947	A5SS	ENSMUST00000238515.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000021676.11	Iqgap2	chr13	protein_coding	IQ motif containing GTPase activating protein 2
novel_NIR_5450	chr13	95974431	96027919	-	95974431	96028947	A5SS	ENSMUST00000238515.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000021676.11	Iqgap2	chr13	protein_coding	IQ motif containing GTPase activating protein 2
novel_NIR_5451	chr13	96721590	96734713	+	96708535	96734713	A5SS	ENSMUST00000179226.8	novel	0.00	0	20	0	20	n	0.00	0	13	0	13	n	0.00	0	20	0	20	n	0.00	0	28	0	28	n	0.00	0	31	0	31	n	0.17	2	10	2	10	y	0.00	0	43	0	43	n	0.00	0	17	0	17	n	0.04	1	23	1	23	n	0.02	1	42	1	42	n	0.00	0	10	0	10	n	0.03	1	34	1	34	n	ENSMUSG00000021669.16	Cert1	chr13	protein_coding	ceramide transporter 1
novel_NIR_5452	chr13	97061456;97072148	97072045;97072388	+	97061456	97072388	cassetteExon	ENSMUST00000171324.3	novel	-	-	-	-	-	-	0.00	0.0	1	0;0	1	n	0.29	2.5	6	2;3	6	y	0.25	2.0	6	0;4	6	n	0.09	0.5	5	1;0	5	n	0.00	0.0	1	0;0	1	n	0.33	0.5	1	1;0	1	n	0.23	1.5	5	0;3	5	n	0.14	0.5	3	0;1	3	n	0.00	0.0	3	0;0	3	n	1.00	0.5	0	0;1	0	n	0.00	0.0	2	0;0	2	n	ENSMUSG00000091387.3	Gcnt4	chr13	protein_coding	glucosaminyl (N-acetyl) transferase 4, core 2 (beta-1,6-N-acetylglucosaminyltransferase)
novel_NIR_5453	chr13	97072148	97072388	+	97061456	97072388	A5SS	ENSMUST00000171324.3	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	3	6	3	6	n	0.40	4	6	4	6	y	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.38	3	5	3	5	y	0.25	1	3	1	3	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	ENSMUSG00000091387.3	Gcnt4	chr13	protein_coding	glucosaminyl (N-acetyl) transferase 4, core 2 (beta-1,6-N-acetylglucosaminyltransferase)
novel_NIR_5454	chr13	9735256	9735323	+	9735256	9739278	A3SS	ENSMUST00000222215.2	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000114138.2	Gm36423	chr13	lncRNA	predicted gene, 36423
novel_NIR_5455	chr13	9748741	9758859	-	9748741	9758623	A5SS	ENSMUST00000140180.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000021156.18	Zmynd11	chr13	protein_coding	zinc finger, MYND domain containing 11
novel_NIR_5456	chr13	9748741	9758859	-	9748741	9770809	A5SS	ENSMUST00000110637.8	novel	0.00	0	11	0	11	n	0.12	2	14	2	14	n	0.00	0	20	0	20	n	0.00	0	19	0	19	n	0.00	0	23	0	23	n	0.00	0	10	0	10	n	0.00	0	21	0	21	n	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.04	1	23	1	23	n	0.17	2	10	2	10	y	0.00	0	14	0	14	n	ENSMUSG00000021156.18	Zmynd11	chr13	protein_coding	zinc finger, MYND domain containing 11
novel_NIR_5457	chr13	97512590	97515316	+	97512877	97515316	5pMXE	ENSMUST00000223964.2	novel	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000114425.2	Gm33447	chr13	lncRNA	predicted gene, 33447
novel_NIR_5458	chr13	97512870	97515316	+	97512877	97515316	A5SS	ENSMUST00000223964.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000114425.2	Gm33447	chr13	lncRNA	predicted gene, 33447
novel_NIR_5459	chr13	97619540	97622557	+	97619540	97625687	A3SS	ENSMUST00000180371.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000078952.10	Lncenc1	chr13	lncRNA	long non-coding RNA, embryonic stem cells expressed 1
novel_NIR_5460	chr13	97619540	97622557	+	97619540	97630913	A3SS	ENSMUST00000179324.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000078952.10	Lncenc1	chr13	lncRNA	long non-coding RNA, embryonic stem cells expressed 1
novel_NIR_5461	chr13	97625856	97627010	+	97625856	97625965	3pMXE	ENSMUST00000180371.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000078952.10	Lncenc1	chr13	lncRNA	long non-coding RNA, embryonic stem cells expressed 1
novel_NIR_5462	chr13	97625856	97629664	+	97625856	97625965	3pMXE	ENSMUST00000180371.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000078952.10	Lncenc1	chr13	lncRNA	long non-coding RNA, embryonic stem cells expressed 1
novel_NIR_5463	chr13	97630238	97630913	+	97571600	97630913	A5SS	ENSMUST00000109431.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000078952.10	Lncenc1	chr13	lncRNA	long non-coding RNA, embryonic stem cells expressed 1
novel_NIR_5464	chr13	97630238	97630913	+	97619540	97630913	A5SS	ENSMUST00000179324.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000078952.10	Lncenc1	chr13	lncRNA	long non-coding RNA, embryonic stem cells expressed 1
novel_NIR_5465	chr13	98403053	98403824	+	98399984	98403824	A5SS	ENSMUST00000226100.2	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.71	5	2	5	2	y	0.20	1	4	1	4	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.75	9	3	9	3	y	ENSMUSG00000021661.17	Ankra2	chr13	protein_coding	ankyrin repeat, family A (RFXANK-like), 2
novel_NIR_5466	chr13	98403053	98403824	+	98403040	98403824	A5SS	ENSMUST00000150352.3	novel	0.00	0	17	0	17	n	0.00	0	28	0	28	n	0.00	0	30	0	30	n	0.07	2	27	2	27	n	0.10	4	38	4	38	n	0.11	1	8	1	8	n	0.03	1	28	1	28	n	0.26	5	14	5	14	y	0.06	1	15	1	15	n	0.00	0	45	0	45	n	0.07	2	26	2	26	n	0.24	9	28	9	28	y	ENSMUSG00000021661.17	Ankra2	chr13	protein_coding	ankyrin repeat, family A (RFXANK-like), 2
novel_NIR_5467	chr13	98454103	98455582	+	98454117	98455582	A5SS	ENSMUST00000126622.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000048603.9	Gm9828	chr13	lncRNA	predicted gene 9828
novel_NIR_5468	chr13	98823027	98824856	-	98823024	98824856	A3SS	ENSMUST00000064347.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.60	3	2	3	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000052485.8	Tmem171	chr13	protein_coding	transmembrane protein 171
novel_NIR_5469	chr13	98880043	98882309	-	98880048	98882309	A3SS	ENSMUST00000099277.12	novel	0.00	0	29	0	29	n	0.28	5	13	5	13	y	0.00	0	52	0	52	n	0.00	0	40	0	40	n	0.00	0	52	0	52	n	0.04	1	22	1	22	n	0.03	1	32	1	32	n	0.00	0	31	0	31	n	0.03	1	29	1	29	n	0.00	0	55	0	55	n	0.00	0	35	0	35	n	0.00	0	46	0	46	n	ENSMUSG00000041685.17	Fcho2	chr13	protein_coding	FCH domain only 2
novel_NIR_5470	chr13	98892133	98898366	-	98892133	98892249	A5SS&ES	ENSMUST00000099277.12	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041685.17	Fcho2	chr13	protein_coding	FCH domain only 2
novel_NIR_5471	chr13	99220432	99223857	-	99220432	99224362	A5SS	ENSMUST00000189489.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000100410.2	2310020H05Rik	chr13	lncRNA	RIKEN cDNA 2310020H05 gene
novel_NIR_5472	chr13	99536884	99538855	+	99536884	99537778	A3SS&ES	ENSMUST00000224660.3	novel	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.29	2	5	2	5	y	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	ENSMUSG00000041632.8	Mrps27	chr13	protein_coding	mitochondrial ribosomal protein S27
novel_NIR_5473	chr14	100179049	100179470	-	100137675	100179470	A3SS	ENSMUST00000228216.2	novel	0.33	4	8	4	8	y	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.10	2	19	2	19	n	0.11	4	33	4	33	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	23	0	23	n	0.08	1	11	1	11	n	0.18	4	18	4	18	y	0.00	0	8	0	8	n	0.14	5	31	5	31	n	ENSMUSG00000072294.6	Klf12	chr14	protein_coding	Kruppel-like factor 12
novel_NIR_5474	chr14	100225002	100347207	-	100225002;100260604	100260058;100347207	ES	ENSMUST00000228216.2	novel	0.00	0	10.0	0	7;13	n	0.17	1	5.0	1	5;5	n	0.00	0	11.5	0	15;8	n	0.00	0	13.5	0	18;9	n	0.04	1	25.5	1	30;21	n	0.09	1	10.0	1	11;9	n	0.12	2	14.0	2	15;13	n	0.00	0	13.5	0	17;10	n	0.00	0	7.0	0	5;9	n	0.17	2	9.5	2	11;8	y	0.00	0	6.5	0	8;5	n	0.00	0	16.0	0	21;11	n	ENSMUSG00000072294.6	Klf12	chr14	protein_coding	Kruppel-like factor 12
novel_NIR_5475	chr14	100225002	100347207	-	100260604	100347207	3pMXE	ENSMUST00000226774.2	novel	0.00	0	13	0	13	n	0.17	1	5	1	5	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.05	1	21	1	21	n	0.10	1	9	1	9	n	0.13	2	13	2	13	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.20	2	8	2	8	y	0.00	0	5	0	5	n	0.00	0	11	0	11	n	ENSMUSG00000072294.6	Klf12	chr14	protein_coding	Kruppel-like factor 12
novel_NIR_5476	chr14	100225002	100426939	-	100225002	100260058	A5SS&ES	ENSMUST00000228216.2	novel	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	15	0	15	n	0.00	0	18	0	18	n	0.00	0	30	0	30	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	17	0	17	n	0.29	2	5	2	5	y	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	21	0	21	n	ENSMUSG00000072294.6	Klf12	chr14	protein_coding	Kruppel-like factor 12
novel_NIR_5477	chr14	100387231	100470804	-	100387231	100521693	A5SS	ENSMUST00000226774.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000072294.6	Klf12	chr14	protein_coding	Kruppel-like factor 12
novel_NIR_5478	chr14	100387231	100470804	-	100387231	100521967	A5SS	ENSMUST00000228216.2	novel	0.33	2	4	2	4	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.00	0	1	0	1	n	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	16	0	16	n	ENSMUSG00000072294.6	Klf12	chr14	protein_coding	Kruppel-like factor 12
novel_NIR_5479	chr14	100523676	100529499	+	100523604	100529499	A5SS	ENSMUST00000211525.2	novel	0.67	2	1	2	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.67	4	2	4	2	y	0.50	1	1	1	1	n	-	-	-	-	-	-	0.11	1	8	1	8	n	0.67	2	1	2	1	y	0.00	0	3	0	3	n	ENSMUSG00000110273.2	Gm41231	chr14	lncRNA	predicted gene, 41231
novel_NIR_5480	chr14	100529660	100529750	+	100529660	100529729	A3SS	ENSMUST00000211525.2	novel	0.50	2	2	2	2	y	0.50	2	2	2	2	y	1.00	1	0	1	0	n	0.33	3	6	3	6	y	0.50	4	4	4	4	y	0.50	1	1	1	1	n	0.71	5	2	5	2	y	0.00	0	4	0	4	n	0.80	4	1	4	1	y	1.00	7	0	7	0	y	0.57	4	3	4	3	y	0.33	2	4	2	4	y	ENSMUSG00000110273.2	Gm41231	chr14	lncRNA	predicted gene, 41231
novel_NIR_5481	chr14	100529660	100529768	+	100529660	100529729	A3SS	ENSMUST00000211525.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.33	2	4	2	4	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000110273.2	Gm41231	chr14	lncRNA	predicted gene, 41231
novel_NIR_5482	chr14	101703200	101712513	-	101703200	101708864	A5SS&ES	ENSMUST00000159484.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033083.17	Tbc1d4	chr14	protein_coding	TBC1 domain family, member 4
novel_NIR_5483	chr14	101703200	101712513	-	101703200	101714416	A5SS	ENSMUST00000161991.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	1.00	4	0	4	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000033083.17	Tbc1d4	chr14	protein_coding	TBC1 domain family, member 4
novel_NIR_5484	chr14	101703200	101712513	-	101703200;101708887	101708864;101712513	ES	ENSMUST00000162617.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0.0	4	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033083.17	Tbc1d4	chr14	protein_coding	TBC1 domain family, member 4
novel_NIR_5485	chr14	101906012	101911572	+	101906012	101923007	A3SS	ENSMUST00000226340.2	novel	0.50	2	2	2	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	n	0.33	1	2	1	2	n	1.00	6	0	6	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.80	4	1	4	1	n	ENSMUSG00000022111.10	Uchl3	chr14	protein_coding	ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)
novel_NIR_5486	chr14	101906012;101911694	101911572;101928008	+	101906012;101923198	101923007;101928008	MXE	ENSMUST00000226340.2	novel	0.60	1.5	1.0	2;1	2;0	n	-	-	-	-	-	-	0.00	0.0	1.5	0;0	1;2	n	-	-	-	-	-	-	1.00	1.5	0.0	3;0	0;0	n	0.20	0.5	2.0	1;0	2;2	n	0.83	5.0	1.0	6;4	0;2	y	-	-	-	-	-	-	0.00	0.0	1.0	0;0	1;1	n	0.67	1.0	0.5	0;2	1;0	n	1.00	1.0	0.0	2;0	0;0	n	0.90	4.5	0.5	4;5	1;0	y	ENSMUSG00000022111.10	Uchl3	chr14	protein_coding	ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)
novel_NIR_5487	chr14	101911694	101928008	+	101923198	101928008	A5SS&ES	ENSMUST00000226340.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	4	2	4	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	5	0	5	0	n	ENSMUSG00000022111.10	Uchl3	chr14	protein_coding	ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)
novel_NIR_5488	chr14	102123008;102123767	102123567;102124373	+	102123008	102124373	cassetteExon	ENSMUST00000100337.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4.0	0	2;6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0.0	1	0;0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033060.17	Lmo7	chr14	protein_coding	LIM domain only 7
novel_NIR_5489	chr14	103215441	103218915	-	103215438	103218915	A3SS	ENSMUST00000183756.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.75	3	1	3	1	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000098557.2	Kctd12	chr14	protein_coding	potassium channel tetramerisation domain containing 12
novel_NIR_5490	chr14	103329862	103332868	-	103329862	103332773	A5SS	ENSMUST00000132004.8	novel	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.29	2	5	2	5	y	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	13	0	13	n	0.11	1	8	1	8	n	0.00	0	8	0	8	n	ENSMUSG00000022124.16	Fbxl3	chr14	protein_coding	F-box and leucine-rich repeat protein 3
novel_NIR_5491	chr14	103329862	103336598	-	103326909	103336598	A3SS	ENSMUST00000226952.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022124.16	Fbxl3	chr14	protein_coding	F-box and leucine-rich repeat protein 3
novel_NIR_5492	chr14	103384468	103385944	-	103384465	103385944	A3SS	ENSMUST00000161008.8	novel	0.67	8	4	8	4	y	0.60	3	2	3	2	y	0.20	1	4	1	4	n	0.68	13	6	13	6	y	0.00	0	5	0	5	n	0.56	5	4	5	4	y	0.78	7	2	7	2	y	0.75	9	3	9	3	y	1.00	3	0	3	0	y	0.93	13	1	13	1	y	1.00	11	0	11	0	y	0.77	20	6	20	6	y	ENSMUSG00000033004.17	Mycbp2	chr14	protein_coding	MYC binding protein 2, E3 ubiquitin protein ligase
novel_NIR_5493	chr14	103457584	103460346	-	103457575	103460346	A3SS	ENSMUST00000160758.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	ENSMUSG00000033004.17	Mycbp2	chr14	protein_coding	MYC binding protein 2, E3 ubiquitin protein ligase
novel_NIR_5494	chr14	103642313	103677751	+	103662677	103677751	5pMXE	ENSMUST00000228080.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	ENSMUSG00000115099.2	1700087I21Rik	chr14	lncRNA	RIKEN cDNA 1700087I21 gene
novel_NIR_5495	chr14	103642313	103677751	+	103676234	103677751	5pMXE	ENSMUST00000226705.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	ENSMUSG00000115099.2	1700087I21Rik	chr14	lncRNA	RIKEN cDNA 1700087I21 gene
novel_NIR_5496	chr14	105381726	105384316	-	105381726	105387689	A5SS	ENSMUST00000163545.8	novel	0.00	0	17	0	17	n	0.00	0	15	0	15	n	0.12	4	30	4	30	n	0.06	1	16	1	16	n	0.00	0	22	0	22	n	0.00	0	19	0	19	n	0.00	0	22	0	22	n	0.17	2	10	2	10	y	0.00	0	16	0	16	n	0.08	1	11	1	11	n	0.06	1	15	1	15	n	0.12	4	28	4	28	n	ENSMUSG00000022119.16	Rbm26	chr14	protein_coding	RNA binding motif protein 26
novel_NIR_5497	chr14	11113117	11121505	+	11113277	11121505	A5SS	ENSMUST00000181173.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	8	0	8	0	y	1.00	4	0	4	0	y	1.00	9	0	9	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	0.79	11	3	11	3	y	1.00	9	0	9	0	y	0.62	5	3	5	3	y	ENSMUSG00000097148.3	Gm3839	chr14	protein_coding	predicted pseudogene 3839
novel_NIR_5498	chr14	11113117	11122854	+	11121694	11122854	A5SS&ES	ENSMUST00000181173.2	novel	0.68	15	7	15	7	y	0.67	18	9	18	9	y	1.00	3	0	3	0	y	0.62	18	11	18	11	y	0.68	32	15	32	15	y	0.70	7	3	7	3	y	0.70	16	7	16	7	y	0.92	11	1	11	1	y	0.70	28	12	28	12	y	0.81	30	7	30	7	y	0.72	23	9	23	9	y	0.75	45	15	45	15	y	ENSMUSG00000097148.3	Gm3839	chr14	protein_coding	predicted pseudogene 3839
novel_NIR_5499	chr14	11113277	11122854	+	11113277;11121694	11121505;11122854	ES	ENSMUST00000181173.2	novel	0.46	3	3.5	3	0;7	y	0.00	0	4.5	0	0;9	n	-	-	-	-	-	-	0.00	0	5.5	0	0;11	n	0.00	0	7.5	0	0;15	n	0.00	0	1.5	0	0;3	n	0.00	0	3.5	0	0;7	n	0.00	0	0.5	0	0;1	n	0.00	0	6.0	0	0;12	n	0.00	0	5.0	0	3;7	n	0.00	0	4.5	0	0;9	n	0.10	1	9.0	1	3;15	n	ENSMUSG00000097148.3	Gm3839	chr14	protein_coding	predicted pseudogene 3839
novel_NIR_5500	chr14	11740048	11937072	+	11740048	12048160	A3SS	ENSMUST00000160340.8	novel	0.40	2	3	2	3	y	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000060579.14	Fhit	chr14	protein_coding	fragile histidine triad gene
novel_NIR_5501	chr14	118256205	118259702	-	118256205	118271650	A5SS	ENSMUST00000022725.4	novel	1.00	18	0	18	0	y	1.00	14	0	14	0	y	0.80	4	1	4	1	y	1.00	40	0	40	0	y	0.80	4	1	4	1	y	0.00	0	2	0	2	n	0.65	13	7	13	7	y	0.88	7	1	7	1	y	1.00	24	0	24	0	y	1.00	20	0	20	0	y	0.95	18	1	18	1	y	1.00	10	0	10	0	y	ENSMUSG00000022129.5	Dct	chr14	protein_coding	dopachrome tautomerase
novel_NIR_5502	chr14	118277188	118278031	-	118277188	118277873	A5SS&ES	ENSMUST00000022725.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022129.5	Dct	chr14	protein_coding	dopachrome tautomerase
novel_NIR_5503	chr14	118359273	118364911	-	118359273	118364907	A5SS	ENSMUST00000228543.2	novel	0.06	3	45	3	45	n	0.03	2	56	2	56	n	0.03	2	56	2	56	n	0.10	9	81	9	81	n	0.06	4	64	4	64	n	0.09	4	42	4	42	n	0.08	6	72	6	72	n	0.17	8	39	8	39	y	0.02	1	52	1	52	n	0.09	8	85	8	85	n	0.06	4	67	4	67	n	0.06	4	63	4	63	n	ENSMUSG00000022130.11	Tgds	chr14	protein_coding	TDP-glucose 4,6-dehydratase
novel_NIR_5504	chr14	118359273	118364911	-	118359273	118365635	A5SS	ENSMUST00000227350.2	novel	0.38	3	5	3	5	y	0.17	2	10	2	10	y	0.25	2	6	2	6	y	0.43	9	12	9	12	y	0.44	4	5	4	5	y	0.44	4	5	4	5	y	0.29	6	15	6	15	y	0.89	8	1	8	1	y	0.12	1	7	1	7	n	0.44	8	10	8	10	y	0.36	4	7	4	7	y	0.25	4	12	4	12	y	ENSMUSG00000022130.11	Tgds	chr14	protein_coding	TDP-glucose 4,6-dehydratase
novel_NIR_5505	chr14	118377307	118390981	+	118377307;118385697	118385497;118390981	ES	ENSMUST00000022728.4	novel	0.05	3	60.5	3	59;62	n	0.11	7	57.5	7	50;65	n	0.06	5	73.0	5	68;78	n	0.10	8	75.0	8	69;81	n	0.09	7	69.0	7	50;88	n	0.22	15	54.5	15	50;59	y	0.11	8	65.0	8	53;77	n	0.14	8	49.0	8	35;63	n	0.06	3	48.5	3	44;53	n	0.11	12	96.5	12	97;96	n	0.06	4	63.0	4	49;77	n	0.10	9	79.0	9	69;89	n	ENSMUSG00000022131.4	Gpr180	chr14	protein_coding	G protein-coupled receptor 180
novel_NIR_5506	chr14	119224325	119235509	-	119224325	119232358	A5SS	ENSMUST00000123350.8	novel	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.25	2	6	2	6	y	0.12	1	7	1	7	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000042104.19	Uggt2	chr14	protein_coding	UDP-glucose glycoprotein glucosyltransferase 2
novel_NIR_5507	chr14	119224325	119235509	-	119224325;119232484	119232358;119235509	ES	ENSMUST00000148022.8	novel	0.00	0	3.5	0	4;3	n	0.00	0	6.5	0	5;8	n	0.00	0	6.0	0	4;8	n	0.00	0	2.5	0	3;2	n	0.00	0	7.0	0	4;10	n	0.25	2	6.0	2	6;6	y	0.10	1	9.0	1	7;11	n	0.00	0	5.0	0	6;4	n	0.00	0	5.0	0	3;7	n	0.00	0	4.0	0	3;5	n	0.00	0	4.5	0	1;8	n	0.00	0	8.0	0	4;12	n	ENSMUSG00000042104.19	Uggt2	chr14	protein_coding	UDP-glucose glycoprotein glucosyltransferase 2
novel_NIR_5508	chr14	119235625	119238141	-	119235625	119239183	A5SS	ENSMUST00000148022.8	novel	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000042104.19	Uggt2	chr14	protein_coding	UDP-glucose glycoprotein glucosyltransferase 2
novel_NIR_5509	chr14	119235625	119238141	-	119235625	119240238	A5SS	ENSMUST00000138720.9	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000042104.19	Uggt2	chr14	protein_coding	UDP-glucose glycoprotein glucosyltransferase 2
novel_NIR_5510	chr14	119235625	119238141	-	119235625	119244557	A5SS	ENSMUST00000126023.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000042104.19	Uggt2	chr14	protein_coding	UDP-glucose glycoprotein glucosyltransferase 2
novel_NIR_5511	chr14	119252019	119256879	-	119252019	119256230	5pMXE	ENSMUST00000173391.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.29	2	5	2	5	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000042104.19	Uggt2	chr14	protein_coding	UDP-glucose glycoprotein glucosyltransferase 2
novel_NIR_5512	chr14	119252019	119256879	-	119252019;119256315	119256230;119256879	ES	ENSMUST00000156203.8	novel	-	-	-	-	-	-	0.00	0	2.0	0	1;3	n	0.33	2	4.0	2	5;3	y	-	-	-	-	-	-	0.00	0	1.0	0	1;1	n	0.00	0	1.0	0	0;2	n	0.00	0	2.5	0	2;3	n	0.00	0	1.5	0	3;0	n	-	-	-	-	-	-	0.00	0	1.5	0	2;1	n	0.00	0	1.0	0	1;1	n	-	-	-	-	-	-	ENSMUSG00000042104.19	Uggt2	chr14	protein_coding	UDP-glucose glycoprotein glucosyltransferase 2
novel_NIR_5513	chr14	120562824	120579753	+	120543953	120579753	A5SS	ENSMUST00000227644.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022139.18	Mbnl2	chr14	protein_coding	muscleblind like splicing factor 2
novel_NIR_5514	chr14	121444767	121456789	+	121444770	121456789	A5SS	ENSMUST00000135010.8	novel	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	23	0	23	n	0.03	1	35	1	35	n	0.15	2	11	2	11	y	0.00	0	9	0	9	n	0.06	1	16	1	16	n	0.11	2	16	2	16	n	0.00	0	4	0	4	n	0.00	0	33	0	33	n	0.00	0	19	0	19	n	0.03	1	30	1	30	n	ENSMUSG00000025555.15	Farp1	chr14	protein_coding	FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)
novel_NIR_5515	chr14	121480990	121492820	+	121481020	121492820	A5SS	ENSMUST00000026635.8	novel	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.21	4	15	4	15	y	0.10	1	9	1	9	n	0.00	0	17	0	17	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	18	0	18	n	0.25	1	3	1	3	n	0.00	0	18	0	18	n	ENSMUSG00000025555.15	Farp1	chr14	protein_coding	FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)
novel_NIR_5516	chr14	121481020	121492850	+	121481020	121492820	A3SS	ENSMUST00000026635.8	novel	0.40	2	3	2	3	y	0.00	0	12	0	12	n	0.12	2	15	2	15	n	0.47	8	9	8	9	y	0.06	1	17	1	17	n	0.20	2	8	2	8	y	0.25	4	12	4	12	y	0.20	2	8	2	8	y	0.00	0	12	0	12	n	0.00	0	18	0	18	n	0.00	0	3	0	3	n	0.22	5	18	5	18	y	ENSMUSG00000025555.15	Farp1	chr14	protein_coding	FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)
novel_NIR_5517	chr14	121490614	121492820	+	121481020	121492820	A5SS	ENSMUST00000026635.8	novel	0.25	1	3	1	3	n	0.00	0	12	0	12	n	0.12	2	15	2	15	n	0.10	1	9	1	9	n	0.00	0	17	0	17	n	0.27	3	8	3	8	y	0.08	1	12	1	12	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.18	4	18	4	18	y	0.00	0	3	0	3	n	0.00	0	18	0	18	n	ENSMUSG00000025555.15	Farp1	chr14	protein_coding	FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)
novel_NIR_5518	chr14	121491077	121492820	+	121481020	121492820	A5SS	ENSMUST00000026635.8	novel	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.32	7	15	7	15	y	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.00	0	8	0	8	n	0.08	1	12	1	12	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	18	0	18	n	0.00	0	3	0	3	n	0.00	0	18	0	18	n	ENSMUSG00000025555.15	Farp1	chr14	protein_coding	FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)
novel_NIR_5519	chr14	121491701	121492820	+	121481020	121492820	A5SS	ENSMUST00000026635.8	novel	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.32	7	15	7	15	y	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.38	5	8	5	8	y	0.14	2	12	2	12	n	0.00	0	8	0	8	n	0.14	2	12	2	12	n	0.00	0	18	0	18	n	0.00	0	3	0	3	n	0.00	0	18	0	18	n	ENSMUSG00000025555.15	Farp1	chr14	protein_coding	FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)
novel_NIR_5520	chr14	121540267	121542539	-	121540267	121540728	5pMXE	ENSMUST00000227273.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000063410.9	Stk24	chr14	protein_coding	serine/threonine kinase 24
novel_NIR_5521	chr14	121600875	121616310	-	121575064	121616310	A3SS	ENSMUST00000079817.8	novel	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.00	0	29	0	29	n	0.00	0	24	0	24	n	0.00	0	43	0	43	n	0.00	0	19	0	19	n	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.15	2	11	2	11	y	0.00	0	31	0	31	n	0.00	0	8	0	8	n	0.00	0	22	0	22	n	ENSMUSG00000063410.9	Stk24	chr14	protein_coding	serine/threonine kinase 24
novel_NIR_5522	chr14	121773521	121783378	-	121781037	121783378	3pMXE	ENSMUST00000211803.2	novel	0.17	3	15	3	15	y	0.09	2	21	2	21	n	0.00	0	11	0	11	n	0.12	2	14	2	14	n	0.00	0	24	0	24	n	0.00	0	10	0	10	n	0.00	0	21	0	21	n	0.00	0	7	0	7	n	0.09	1	10	1	10	n	0.07	2	25	2	25	n	0.00	0	17	0	17	n	0.00	0	15	0	15	n	ENSMUSG00000025558.20	Dock9	chr14	protein_coding	dedicator of cytokinesis 9
novel_NIR_5523	chr14	121781423	121783378	-	121781995	121783378	A3SS&ES	ENSMUST00000212376.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000025558.20	Dock9	chr14	protein_coding	dedicator of cytokinesis 9
novel_NIR_5524	chr14	121797372	121798002	-	121796545	121798002	A3SS	ENSMUST00000211803.2	novel	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	18	0	18	n	0.00	0	20	0	20	n	0.00	0	21	0	21	n	0.00	0	7	0	7	n	0.15	2	11	2	11	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	ENSMUSG00000025558.20	Dock9	chr14	protein_coding	dedicator of cytokinesis 9
novel_NIR_5525	chr14	121797372	121798002	-	121797372;121797812	121797807;121798002	ES	ENSMUST00000212416.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025558.20	Dock9	chr14	protein_coding	dedicator of cytokinesis 9
novel_NIR_5526	chr14	121797372	121798002	-	121797812	121798002	A3SS&ES	ENSMUST00000212376.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025558.20	Dock9	chr14	protein_coding	dedicator of cytokinesis 9
novel_NIR_5527	chr14	121828766	121829224	-	121823754	121829224	A3SS	ENSMUST00000212376.3	novel	0.67	2	1	2	1	y	0.00	0	5	0	5	n	0.17	1	5	1	5	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.21	3	11	3	11	y	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.10	1	9	1	9	n	0.00	0	5	0	5	n	0.17	1	5	1	5	n	ENSMUSG00000025558.20	Dock9	chr14	protein_coding	dedicator of cytokinesis 9
novel_NIR_5528	chr14	121828766	121829224	-	121828766	121831748	A5SS	ENSMUST00000100299.11	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.60	3	2	3	2	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000025558.20	Dock9	chr14	protein_coding	dedicator of cytokinesis 9
novel_NIR_5529	chr14	121839227	121842584	-	121837233	121842584	A3SS	ENSMUST00000212376.3	novel	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.18	2	9	2	9	y	0.19	3	13	3	13	y	0.14	1	6	1	6	n	0.33	1	2	1	2	n	0.10	1	9	1	9	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.27	3	8	3	8	y	0.17	1	5	1	5	n	0.11	1	8	1	8	n	ENSMUSG00000025558.20	Dock9	chr14	protein_coding	dedicator of cytokinesis 9
novel_NIR_5530	chr14	121844664	121846568	-	121844691	121846568	A3SS	ENSMUST00000212376.3	novel	0.00	0	2	0	2	n	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.18	2	9	2	9	y	0.00	0	19	0	19	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	ENSMUSG00000025558.20	Dock9	chr14	protein_coding	dedicator of cytokinesis 9
novel_NIR_5531	chr14	122114423	122115672	-	122114423	122115536	A5SS	ENSMUST00000187218.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.50	3	3	3	3	y	1.00	2	0	2	0	y	0.00	0	4	0	4	n	0.20	1	4	1	4	n	-	-	-	-	-	-	0.33	1	2	1	2	n	ENSMUSG00000102112.2	1810041H14Rik	chr14	lncRNA	RIKEN cDNA 1810041H14 gene
novel_NIR_5532	chr14	122114423	122115672	-	122114423	122115702	A5SS	ENSMUST00000187773.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.67	2	1	2	1	y	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000102112.2	1810041H14Rik	chr14	lncRNA	RIKEN cDNA 1810041H14 gene
novel_NIR_5533	chr14	122114423	122115672	-	122114423	122116620	A5SS	ENSMUST00000185880.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	0.20	1	4	1	4	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	ENSMUSG00000102112.2	1810041H14Rik	chr14	lncRNA	RIKEN cDNA 1810041H14 gene
novel_NIR_5534	chr14	122116186	122142540	+	122116186	122144703	A3SS	ENSMUST00000226998.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000041765.7	Ubac2	chr14	protein_coding	ubiquitin associated domain containing 2
novel_NIR_5535	chr14	122211144	122231637	+	122211144;122220727	122220680;122231637	ES	ENSMUST00000039803.7	novel	0.12	11	77.5	11	63;92	n	0.08	6	72.5	6	56;89	n	0.24	28	89.0	28	82;96	y	0.02	2	87.5	2	92;83	n	0.08	10	112.5	10	99;126	n	0.06	4	64.0	4	61;67	n	0.06	8	121.0	8	108;134	n	0.08	5	54.5	5	50;59	n	0.13	9	62.0	9	61;63	n	0.08	8	94.5	8	77;112	n	0.05	5	95.0	5	86;104	n	0.04	4	90.5	4	84;97	n	ENSMUSG00000041765.7	Ubac2	chr14	protein_coding	ubiquitin associated domain containing 2
novel_NIR_5536	chr14	122408984	122548656	+	122419193	122548656	5pMXE	ENSMUST00000026625.7	novel	0.06	4	58	4	58	n	0.12	6	43	6	43	n	0.12	6	45	6	45	n	0.09	7	67	7	67	n	0.09	7	74	7	74	n	0.17	6	29	6	29	y	0.09	8	82	8	82	n	0.07	3	40	3	40	n	0.05	3	56	3	56	n	0.04	4	96	4	96	n	0.08	6	67	6	67	n	0.06	5	74	5	74	n	ENSMUSG00000025545.11	Clybl	chr14	protein_coding	citrate lyase beta like
novel_NIR_5537	chr14	122408984	122548656	+	122495665	122548656	5pMXE	ENSMUST00000226136.2	novel	1.00	4	0	4	0	y	1.00	6	0	6	0	y	1.00	6	0	6	0	y	1.00	7	0	7	0	y	1.00	7	0	7	0	y	1.00	6	0	6	0	y	1.00	8	0	8	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	6	0	6	0	y	1.00	5	0	5	0	y	ENSMUSG00000025545.11	Clybl	chr14	protein_coding	citrate lyase beta like
novel_NIR_5538	chr14	122497262	122548656	+	122495665	122548656	A5SS	ENSMUST00000226136.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025545.11	Clybl	chr14	protein_coding	citrate lyase beta like
novel_NIR_5539	chr14	122514754	122548656	+	122495665	122548656	A5SS	ENSMUST00000226136.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025545.11	Clybl	chr14	protein_coding	citrate lyase beta like
novel_NIR_5540	chr14	122548147	122548656	+	122495665	122548656	A5SS	ENSMUST00000226136.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025545.11	Clybl	chr14	protein_coding	citrate lyase beta like
novel_NIR_5541	chr14	123027866	123114176	+	123113407	123114176	5pMXE	ENSMUST00000140517.2	novel	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	9	0	9	0	y	ENSMUSG00000041650.16	Pcca	chr14	protein_coding	propionyl-Coenzyme A carboxylase, alpha polypeptide
novel_NIR_5542	chr14	123065970	123114176	+	123113407	123114176	5pMXE	ENSMUST00000140517.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000041650.16	Pcca	chr14	protein_coding	propionyl-Coenzyme A carboxylase, alpha polypeptide
novel_NIR_5543	chr14	123137944	123138444	-	123137944	123150880	A5SS	ENSMUST00000160401.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000041625.16	Ggact	chr14	protein_coding	gamma-glutamylamine cyclotransferase
novel_NIR_5544	chr14	123137944	123141051	-	123137944	123150880	A5SS	ENSMUST00000160401.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000041625.16	Ggact	chr14	protein_coding	gamma-glutamylamine cyclotransferase
novel_NIR_5545	chr14	123137944	123142403	-	123137944	123150880	A5SS	ENSMUST00000160401.8	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	9	0	9	0	y	ENSMUSG00000041625.16	Ggact	chr14	protein_coding	gamma-glutamylamine cyclotransferase
novel_NIR_5546	chr14	123137944	123142952	-	123137944	123150277	A5SS	ENSMUST00000162164.2	novel	0.09	6	61	6	61	n	0.03	2	57	2	57	n	0.39	11	17	11	17	y	0.06	3	51	3	51	n	0.08	9	110	9	110	n	0.23	7	24	7	24	y	0.07	8	115	8	115	n	0.05	2	40	2	40	n	0.05	4	74	4	74	n	0.10	9	80	9	80	n	0.09	8	80	8	80	n	0.06	7	101	7	101	n	ENSMUSG00000041625.16	Ggact	chr14	protein_coding	gamma-glutamylamine cyclotransferase
novel_NIR_5547	chr14	123137944	123142952	-	123137944	123150880	A5SS	ENSMUST00000160401.8	novel	1.00	6	0	6	0	y	1.00	2	0	2	0	y	1.00	11	0	11	0	y	1.00	3	0	3	0	y	1.00	9	0	9	0	y	1.00	7	0	7	0	y	1.00	8	0	8	0	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	9	0	9	0	y	1.00	8	0	8	0	y	1.00	7	0	7	0	y	ENSMUSG00000041625.16	Ggact	chr14	protein_coding	gamma-glutamylamine cyclotransferase
novel_NIR_5548	chr14	123137944	123148223	-	123137944	123150880	A5SS	ENSMUST00000160401.8	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000041625.16	Ggact	chr14	protein_coding	gamma-glutamylamine cyclotransferase
novel_NIR_5549	chr14	123169886	123178372	+	123169886	123174249	3pMXE	ENSMUST00000162218.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000075463.4	4930594M22Rik	chr14	lncRNA	RIKEN cDNA 4930594M22 gene
novel_NIR_5550	chr14	123188001	123200710	-	123188001	123192043	5pMXE	ENSMUST00000227430.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.50	3	3	3	3	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000041594.19	Tmtc4	chr14	protein_coding	transmembrane and tetratricopeptide repeat containing 4
novel_NIR_5551	chr14	123188001	123200710	-	123188001	123209152	A5SS	ENSMUST00000128969.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000041594.19	Tmtc4	chr14	protein_coding	transmembrane and tetratricopeptide repeat containing 4
novel_NIR_5552	chr14	123188001	123200710	-	123188004	123200710	A3SS	ENSMUST00000037726.14	novel	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.00	0	6	0	6	n	0.30	3	7	3	7	y	0.25	3	9	3	9	y	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.50	1	1	1	1	n	0.33	1	2	1	2	n	0.15	2	11	2	11	y	ENSMUSG00000041594.19	Tmtc4	chr14	protein_coding	transmembrane and tetratricopeptide repeat containing 4
novel_NIR_5553	chr14	123188004	123209152	-	123188001	123209152	A3SS	ENSMUST00000128969.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041594.19	Tmtc4	chr14	protein_coding	transmembrane and tetratricopeptide repeat containing 4
novel_NIR_5554	chr14	123188004	123209152	-	123188004;123200797	123200710;123209152	ES	ENSMUST00000037726.14	novel	0.00	0	3.0	0	3;3	n	0.00	0	4.5	0	5;4	n	0.00	0	5.5	0	6;5	n	0.00	0	6.0	0	7;5	n	0.00	0	8.0	0	9;7	n	0.00	0	1.0	0	1;1	n	0.17	1	5.0	1	7;3	n	0.50	3	3.0	3	2;4	y	0.00	0	4.5	0	4;5	n	0.00	0	6.0	0	1;11	n	0.00	0	5.0	0	2;8	n	0.00	0	10.5	0	11;10	n	ENSMUSG00000041594.19	Tmtc4	chr14	protein_coding	transmembrane and tetratricopeptide repeat containing 4
novel_NIR_5555	chr14	14212724	14212838	+	14211006	14212838	A5SS	ENSMUST00000022271.14	novel	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.19	8	34	8	34	y	0.14	1	6	1	6	n	0.00	0	21	0	21	n	0.00	0	22	0	22	n	0.00	0	13	0	13	n	0.06	1	15	1	15	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	ENSMUSG00000021751.14	Acox2	chr14	protein_coding	acyl-Coenzyme A oxidase 2, branched chain
novel_NIR_5556	chr14	14212724	14212838	+	14211934	14212838	A5SS	ENSMUST00000171567.2	novel	0.00	0	17	0	17	n	0.00	0	24	0	24	n	0.24	8	25	8	25	y	0.02	1	45	1	45	n	0.00	0	68	0	68	n	0.00	0	24	0	24	n	0.00	0	61	0	61	n	0.02	1	45	1	45	n	0.00	0	32	0	32	n	0.00	0	36	0	36	n	0.00	0	37	0	37	n	0.00	0	36	0	36	n	ENSMUSG00000021751.14	Acox2	chr14	protein_coding	acyl-Coenzyme A oxidase 2, branched chain
novel_NIR_5557	chr14	14213778	14213935	+	14213778	14214472	A3SS	ENSMUST00000171567.2	novel	1.00	2	0	2	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.60	3	2	3	2	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	ENSMUSG00000021751.14	Acox2	chr14	protein_coding	acyl-Coenzyme A oxidase 2, branched chain
novel_NIR_5558	chr14	14228512	14235508	+	14228512	14230209	3pMXE	ENSMUST00000116361.3	novel	0.32	6	13	6	13	y	0.00	0	15	0	15	n	0.00	0	47	0	47	n	0.00	0	13	0	13	n	0.00	0	19	0	19	n	0.11	4	34	4	34	n	0.00	0	20	0	20	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.20	3	12	3	12	y	0.00	0	17	0	17	n	0.07	1	14	1	14	n	ENSMUSG00000021751.14	Acox2	chr14	protein_coding	acyl-Coenzyme A oxidase 2, branched chain
novel_NIR_5559	chr14	14228512	14239486	+	14228512	14230209	3pMXE	ENSMUST00000116361.3	novel	0.00	0	13	0	13	n	0.00	0	15	0	15	n	0.00	0	47	0	47	n	0.00	0	13	0	13	n	0.00	0	19	0	19	n	0.00	0	34	0	34	n	0.00	0	20	0	20	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.20	3	12	3	12	y	0.00	0	17	0	17	n	0.00	0	14	0	14	n	ENSMUSG00000021751.14	Acox2	chr14	protein_coding	acyl-Coenzyme A oxidase 2, branched chain
novel_NIR_5560	chr14	14228512	14243945	+	14228512	14230209	3pMXE	ENSMUST00000116361.3	novel	0.35	7	13	7	13	y	0.42	11	15	11	15	y	0.23	14	47	14	47	y	0.35	7	13	7	13	y	0.27	7	19	7	19	y	0.32	16	34	16	34	y	0.35	11	20	11	20	y	0.29	5	12	5	12	y	0.25	4	12	4	12	y	0.40	8	12	8	12	y	0.19	4	17	4	17	y	0.33	7	14	7	14	y	ENSMUSG00000021751.14	Acox2	chr14	protein_coding	acyl-Coenzyme A oxidase 2, branched chain
novel_NIR_5561	chr14	14249622	14250862	-	14249622	14254272	A5SS	ENSMUST00000170111.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000021752.15	Kctd6	chr14	protein_coding	potassium channel tetramerisation domain containing 6
novel_NIR_5562	chr14	14249622	14250862	-	14249622	14255431	A5SS	ENSMUST00000022272.14	novel	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.17	1	5	1	5	n	0.25	1	3	1	3	n	0.00	0	13	0	13	n	0.22	2	7	2	7	y	0.00	0	6	0	6	n	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.60	3	2	3	2	n	ENSMUSG00000021752.15	Kctd6	chr14	protein_coding	potassium channel tetramerisation domain containing 6
novel_NIR_5563	chr14	14249622	14253665	-	14249622	14254272	A5SS	ENSMUST00000170111.3	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021752.15	Kctd6	chr14	protein_coding	potassium channel tetramerisation domain containing 6
novel_NIR_5564	chr14	14249622	14253665	-	14249622	14255431	A5SS	ENSMUST00000022272.14	novel	0.67	4	2	4	2	y	0.00	0	5	0	5	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.19	3	13	3	13	y	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.09	1	10	1	10	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	ENSMUSG00000021752.15	Kctd6	chr14	protein_coding	potassium channel tetramerisation domain containing 6
novel_NIR_5565	chr14	14298633	14302919	+	14298633	14299954	3pMXE	ENSMUST00000224466.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021748.10	Pdhb	chr14	protein_coding	pyruvate dehydrogenase (lipoamide) beta
novel_NIR_5566	chr14	14313887	14314428	-	14309774	14314428	A3SS	ENSMUST00000112689.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	ENSMUSG00000033885.16	Pxk	chr14	protein_coding	PX domain containing serine/threonine kinase
novel_NIR_5567	chr14	14441536	14453045	-	14441536	14466810	A5SS	ENSMUST00000166497.9	novel	0.00	0	26	0	26	n	0.23	3	10	3	10	y	0.13	3	20	3	20	n	0.00	0	25	0	25	n	0.09	4	40	4	40	n	0.00	0	23	0	23	n	0.14	6	38	6	38	n	0.12	2	15	2	15	n	0.00	0	18	0	18	n	0.09	4	41	4	41	n	0.07	2	25	2	25	n	0.17	4	19	4	19	y	ENSMUSG00000025277.15	Abhd6	chr14	protein_coding	abhydrolase domain containing 6
novel_NIR_5568	chr14	14441536	14466669	-	14441536	14466810	A5SS	ENSMUST00000166497.9	novel	0.28	10	26	10	26	y	0.41	7	10	7	10	y	0.20	5	20	5	20	y	0.31	11	25	11	25	y	0.20	10	40	10	40	y	0.15	4	23	4	23	y	0.24	12	38	12	38	y	0.12	2	15	2	15	n	0.18	4	18	4	18	y	0.33	20	41	20	41	y	0.39	16	25	16	25	y	0.21	5	19	5	19	y	ENSMUSG00000025277.15	Abhd6	chr14	protein_coding	abhydrolase domain containing 6
novel_NIR_5569	chr14	14546318	14547060	-	14546318	14547027	A5SS	ENSMUST00000052678.9	novel	0.79	27	7	27	7	y	0.77	10	3	10	3	y	0.85	40	7	40	7	y	0.82	31	7	31	7	y	0.75	39	13	39	13	y	0.71	12	5	12	5	y	0.97	32	1	32	1	y	1.00	27	0	27	0	y	0.90	18	2	18	2	y	0.87	40	6	40	6	y	0.84	27	5	27	5	y	0.90	53	6	53	6	y	ENSMUSG00000025278.10	Flnb	chr14	protein_coding	filamin, beta
novel_NIR_5570	chr14	19792983	19802309	+	19801633	19802309	5pMXE	ENSMUST00000022340.5	novel	1.00	7	0	7	0	y	-	-	-	-	-	-	0.50	4	4	4	4	y	0.00	0	2	0	2	n	0.80	4	1	4	1	y	0.20	1	4	1	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000021806.5	Nid2	chr14	protein_coding	nidogen 2
novel_NIR_5571	chr14	19798666	19802309	+	19801633	19802309	5pMXE	ENSMUST00000022340.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	ENSMUSG00000021806.5	Nid2	chr14	protein_coding	nidogen 2
novel_NIR_5572	chr14	19831433	19832612	+	19831433	19839739	A3SS	ENSMUST00000022340.5	novel	0.00	0	6	0	6	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	17	0	17	n	ENSMUSG00000021806.5	Nid2	chr14	protein_coding	nidogen 2
novel_NIR_5573	chr14	20127712	20127810	-	20127712	20188407	A5SS	ENSMUST00000226090.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045107.6	Saysd1	chr14	protein_coding	SAYSVFN motif domain containing 1
novel_NIR_5574	chr14	20127712	20132607	-	20127712	20132946	A5SS	ENSMUST00000059666.6	novel	0.06	4	67	4	67	n	0.13	12	83	12	83	n	0.15	14	82	14	82	y	0.08	8	94	8	94	n	0.13	17	111	17	111	n	0.17	14	68	14	68	y	0.12	9	65	9	65	n	0.23	13	43	13	43	y	0.11	8	66	8	66	n	0.00	0	86	0	86	n	0.14	13	81	13	81	n	0.08	6	73	6	73	n	ENSMUSG00000045107.6	Saysd1	chr14	protein_coding	SAYSVFN motif domain containing 1
novel_NIR_5575	chr14	20127712	20132607	-	20127712	20188407	A5SS	ENSMUST00000226090.2	novel	1.00	4	0	4	0	y	1.00	12	0	12	0	y	1.00	14	0	14	0	y	1.00	8	0	8	0	y	1.00	17	0	17	0	y	1.00	14	0	14	0	y	1.00	9	0	9	0	y	1.00	13	0	13	0	y	1.00	8	0	8	0	y	-	-	-	-	-	-	1.00	13	0	13	0	y	1.00	6	0	6	0	y	ENSMUSG00000045107.6	Saysd1	chr14	protein_coding	SAYSVFN motif domain containing 1
novel_NIR_5576	chr14	20345334	20347583	+	20344860	20347583	A5SS	ENSMUST00000224377.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	4	0	4	0	y	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000021809.11	Nudt13	chr14	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 13
novel_NIR_5577	chr14	20345334	20347583	+	20345334	20350655	A3SS	ENSMUST00000223663.2	novel	0.22	2	7	2	7	y	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.27	3	8	3	8	y	0.80	4	1	4	1	y	0.00	0	8	0	8	n	0.20	2	8	2	8	y	-	-	-	-	-	-	0.25	1	3	1	3	n	ENSMUSG00000021809.11	Nudt13	chr14	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 13
novel_NIR_5578	chr14	20345334	20347583	+	20345334	20354021	A3SS	ENSMUST00000225722.2	novel	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.80	4	1	4	1	y	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	ENSMUSG00000021809.11	Nudt13	chr14	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 13
novel_NIR_5579	chr14	20360801	20361173	+	20360801	20361539	A3SS	ENSMUST00000223663.2	novel	0.00	0	22	0	22	n	0.08	2	23	2	23	n	0.33	3	6	3	6	n	0.00	0	34	0	34	n	0.07	2	27	2	27	n	0.14	1	6	1	6	n	0.07	3	38	3	38	n	0.18	5	23	5	23	y	0.09	2	21	2	21	n	0.12	4	28	4	28	n	0.05	1	19	1	19	n	0.18	7	32	7	32	y	ENSMUSG00000021809.11	Nudt13	chr14	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 13
novel_NIR_5580	chr14	20361223	20361539	+	20359865	20361539	A5SS	ENSMUST00000225722.2	novel	0.67	2	1	2	1	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000021809.11	Nudt13	chr14	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 13
novel_NIR_5581	chr14	20361232	20361539	+	20359865	20361539	A5SS	ENSMUST00000225722.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000021809.11	Nudt13	chr14	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 13
novel_NIR_5582	chr14	20398462	20401424	+	20398462	20401362	A3SS	ENSMUST00000224110.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	ENSMUSG00000039599.17	Fam149b	chr14	protein_coding	family with sequence similarity 149, member B
novel_NIR_5583	chr14	20402905	20406423	+	20401484	20406423	A5SS	ENSMUST00000225834.2	novel	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	n	0.75	12	4	12	4	y	-	-	-	-	-	-	1.00	11	0	11	0	y	-	-	-	-	-	-	0.71	5	2	5	2	y	1.00	8	0	8	0	y	0.25	1	3	1	3	n	1.00	10	0	10	0	y	ENSMUSG00000039599.17	Fam149b	chr14	protein_coding	family with sequence similarity 149, member B
novel_NIR_5584	chr14	20402905	20406423	+	20402905	20424398	A3SS	ENSMUST00000225991.2	novel	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	0.92	12	1	12	1	y	-	-	-	-	-	-	1.00	11	0	11	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	8	0	8	0	y	1.00	1	0	1	0	n	1.00	10	0	10	0	y	ENSMUSG00000039599.17	Fam149b	chr14	protein_coding	family with sequence similarity 149, member B
novel_NIR_5585	chr14	20402905	20406423	+	20402907	20406423	A5SS	ENSMUST00000224930.2	novel	0.10	6	53	6	53	n	0.00	0	44	0	44	n	0.00	0	45	0	45	n	0.06	3	47	3	47	n	0.15	12	66	12	66	y	0.00	0	15	0	15	n	0.16	11	56	11	56	y	0.00	0	24	0	24	n	0.08	5	60	5	60	n	0.10	8	69	8	69	n	0.02	1	49	1	49	n	0.16	10	51	10	51	y	ENSMUSG00000039599.17	Fam149b	chr14	protein_coding	family with sequence similarity 149, member B
novel_NIR_5586	chr14	20402907	20408092	+	20402907	20404840	3pMXE	ENSMUST00000224242.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000039599.17	Fam149b	chr14	protein_coding	family with sequence similarity 149, member B
novel_NIR_5587	chr14	20402907	20417914	+	20402907	20404840	3pMXE	ENSMUST00000224242.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000039599.17	Fam149b	chr14	protein_coding	family with sequence similarity 149, member B
novel_NIR_5588	chr14	20413518	20415219	+	20413518	20417914	A3SS	ENSMUST00000224721.2	novel	0.00	0	15	0	15	n	0.00	0	25	0	25	n	0.00	0	11	0	11	n	0.00	0	25	0	25	n	0.03	1	28	1	28	n	0.00	0	8	0	8	n	0.15	3	17	3	17	y	0.00	0	13	0	13	n	0.00	0	16	0	16	n	0.00	0	41	0	41	n	0.00	0	20	0	20	n	0.00	0	24	0	24	n	ENSMUSG00000039599.17	Fam149b	chr14	protein_coding	family with sequence similarity 149, member B
novel_NIR_5589	chr14	20428951	20429466	+	20428951	20431821	A3SS	ENSMUST00000225942.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	4	0	4	0	n	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000039599.17	Fam149b	chr14	protein_coding	family with sequence similarity 149, member B
novel_NIR_5590	chr14	20428951;20429520	20429466;20432985	+	20428951;20431889	20431821;20432985	MXE	ENSMUST00000225942.2	novel	0.00	0.0	14.0	0;0	2;26	n	0.00	0.0	17.0	0;0	0;34	n	0.00	0.0	16.0	0;0	0;32	n	0.14	2.5	15.0	5;0	0;30	n	0.20	3.5	14.0	4;3	0;28	y	0.08	0.5	5.5	1;0	0;11	n	0.09	2.5	25.5	5;0	0;51	n	0.05	0.5	9.0	1;0	0;18	n	0.12	2.0	14.0	4;0	0;28	n	0.00	0.0	17.5	0;0	0;35	n	0.00	0.0	13.0	0;0	0;26	n	0.02	0.5	21.0	1;0	0;42	n	ENSMUSG00000039599.17	Fam149b	chr14	protein_coding	family with sequence similarity 149, member B
novel_NIR_5591	chr14	20513088	20517939	-	20517591	20517939	3pMXE	ENSMUST00000223960.2	novel	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.44	7	9	7	9	y	0.60	3	2	3	2	y	0.50	2	2	2	2	y	0.25	1	3	1	3	n	0.00	0	35	0	35	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.43	3	4	3	4	y	ENSMUSG00000021814.18	Anxa7	chr14	protein_coding	annexin A7
novel_NIR_5592	chr14	20738681	20752980	-	20738681;20738907	20738833;20752980	ES	ENSMUST00000180987.2	novel	0.33	1	2.0	1	2;2	n	0.57	2	1.5	2	2;1	y	0.50	1	1.0	1	2;0	n	-	-	-	-	-	-	0.40	1	1.5	1	3;0	n	0.80	2	0.5	2	1;0	y	0.00	0	2.5	0	3;2	n	-	-	-	-	-	-	0.00	0	1.0	0	2;0	n	0.00	0	1.0	0	2;0	n	0.00	0	2.0	0	1;3	n	-	-	-	-	-	-	ENSMUSG00000097577.3	6230400D17Rik	chr14	lncRNA	RIKEN cDNA 6230400D17 gene
novel_NIR_5593	chr14	20761774	20761859	+	20761698	20761859	A5SS	ENSMUST00000022358.9	novel	0.00	0	30	0	30	n	0.08	1	11	1	11	n	0.00	0	31	0	31	n	0.00	0	25	0	25	n	0.00	0	52	0	52	n	0.00	0	26	0	26	n	0.15	4	23	4	23	y	0.00	0	23	0	23	n	0.12	2	14	2	14	n	0.00	0	35	0	35	n	0.00	0	15	0	15	n	0.00	0	23	0	23	n	ENSMUSG00000021819.12	Zswim8	chr14	protein_coding	zinc finger SWIM-type containing 8
novel_NIR_5594	chr14	20768060	20768229	+	20768060	20768495	A3SS	ENSMUST00000022358.9	novel	0.07	2	27	2	27	n	0.05	1	21	1	21	n	0.16	11	59	11	59	y	0.11	5	41	5	41	n	0.12	6	44	6	44	n	0.06	2	32	2	32	n	0.00	0	37	0	37	n	0.00	0	34	0	34	n	0.07	2	28	2	28	n	0.10	5	45	5	45	n	0.15	6	35	6	35	n	0.08	4	46	4	46	n	ENSMUSG00000021819.12	Zswim8	chr14	protein_coding	zinc finger SWIM-type containing 8
novel_NIR_5595	chr14	20778358	20778519	-	20778254	20778519	A3SS	ENSMUST00000225419.2	novel	0.67	4	2	4	2	y	-	-	-	-	-	-	0.86	6	1	6	1	y	-	-	-	-	-	-	0.67	4	2	4	2	y	1.00	3	0	3	0	y	1.00	7	0	7	0	y	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000039308.7	Ndst2	chr14	protein_coding	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2
novel_NIR_5596	chr14	20778358	20778519	-	20778329	20778519	A3SS	ENSMUST00000223679.2	novel	0.13	4	27	4	27	n	0.00	0	22	0	22	n	0.13	6	40	6	40	n	0.00	0	23	0	23	n	0.10	4	38	4	38	n	0.09	3	32	3	32	n	0.19	7	29	7	29	y	0.00	0	24	0	24	n	0.04	1	26	1	26	n	0.03	1	38	1	38	n	0.00	0	29	0	29	n	0.00	0	43	0	43	n	ENSMUSG00000039308.7	Ndst2	chr14	protein_coding	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2
novel_NIR_5597	chr14	21091158	21102523	-	21091158	21102208	A5SS	ENSMUST00000156716.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000021824.14	Ap3m1	chr14	protein_coding	adaptor-related protein complex 3, mu 1 subunit
novel_NIR_5598	chr14	21095779	21102208	-	21090205	21102208	A3SS	ENSMUST00000224016.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021824.14	Ap3m1	chr14	protein_coding	adaptor-related protein complex 3, mu 1 subunit
novel_NIR_5599	chr14	21095779	21102208	-	21091158	21102208	A3SS	ENSMUST00000156716.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.83	5	1	5	1	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000021824.14	Ap3m1	chr14	protein_coding	adaptor-related protein complex 3, mu 1 subunit
novel_NIR_5600	chr14	21095831	21097544	-	21095831	21101964	A5SS	ENSMUST00000148886.2	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.60	3	2	3	2	y	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.11	1	8	1	8	n	0.00	0	4	0	4	n	0.07	1	13	1	13	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	ENSMUSG00000021824.14	Ap3m1	chr14	protein_coding	adaptor-related protein complex 3, mu 1 subunit
novel_NIR_5601	chr14	21095831	21097544	-	21095831	21102523	A5SS	ENSMUST00000130291.8	novel	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.27	3	8	3	8	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.08	1	12	1	12	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	ENSMUSG00000021824.14	Ap3m1	chr14	protein_coding	adaptor-related protein complex 3, mu 1 subunit
novel_NIR_5602	chr14	21102768	21103165	+	21102768	21104013	A3SS	ENSMUST00000223641.2	novel	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.18	2	9	2	9	y	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.08	1	11	1	11	n	0.00	0	16	0	16	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	ENSMUSG00000039197.11	Adk	chr14	protein_coding	adenosine kinase
novel_NIR_5603	chr14	21102768	21153888	+	21102768	21104013	3pMXE	ENSMUST00000223641.2	novel	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.18	2	9	2	9	y	0.15	2	11	2	11	y	0.00	0	11	0	11	n	0.16	3	16	3	16	y	0.00	0	2	0	2	n	0.20	1	4	1	4	n	ENSMUSG00000039197.11	Adk	chr14	protein_coding	adenosine kinase
novel_NIR_5604	chr14	21102768	21219868	+	21102768	21104013	3pMXE	ENSMUST00000223641.2	novel	0.00	0	1	0	1	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.11	1	8	1	8	n	0.10	1	9	1	9	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.00	0	2	0	2	n	0.50	4	4	4	4	y	ENSMUSG00000039197.11	Adk	chr14	protein_coding	adenosine kinase
novel_NIR_5605	chr14	21126363	21142435	+	21104084	21142435	A5SS	ENSMUST00000224899.2	novel	0.00	0	1	0	1	n	0.22	2	7	2	7	y	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.22	2	7	2	7	y	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.14	1	6	1	6	n	0.25	2	6	2	6	y	0.10	1	9	1	9	n	ENSMUSG00000039197.11	Adk	chr14	protein_coding	adenosine kinase
novel_NIR_5606	chr14	21290639	21356331	+	21290639	21419139	A3SS	ENSMUST00000223915.2	novel	0.00	0	11	0	11	n	0.20	2	8	2	8	y	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.00	0	15	0	15	n	0.14	1	6	1	6	n	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.24	4	13	4	13	y	0.00	0	7	0	7	n	0.18	2	9	2	9	y	ENSMUSG00000039197.11	Adk	chr14	protein_coding	adenosine kinase
novel_NIR_5607	chr14	21368251	21368646	+	21368251	21376660	A3SS	ENSMUST00000223645.2	novel	0.43	34	45	34	45	y	0.58	45	32	45	32	y	0.55	52	43	52	43	y	0.65	40	22	40	22	y	0.56	43	34	43	34	y	0.60	43	29	43	29	y	0.49	34	35	34	35	y	0.63	39	23	39	23	y	0.60	24	16	24	16	y	0.64	43	24	43	24	y	0.58	30	22	30	22	y	0.59	48	34	48	34	y	ENSMUSG00000039197.11	Adk	chr14	protein_coding	adenosine kinase
novel_NIR_5608	chr14	21368251	21368912	+	21368251	21376660	A3SS	ENSMUST00000223645.2	novel	0.00	0	45	0	45	n	0.00	0	32	0	32	n	0.00	0	43	0	43	n	0.00	0	22	0	22	n	0.00	0	34	0	34	n	0.00	0	29	0	29	n	0.00	0	35	0	35	n	0.28	9	23	9	23	y	0.00	0	16	0	16	n	0.00	0	24	0	24	n	0.00	0	22	0	22	n	0.00	0	34	0	34	n	ENSMUSG00000039197.11	Adk	chr14	protein_coding	adenosine kinase
novel_NIR_5609	chr14	21368251	21408230	+	21368251	21376660	3pMXE	ENSMUST00000223645.2	novel	0.15	8	45	8	45	y	0.09	3	32	3	32	n	0.09	4	43	4	43	n	0.00	0	22	0	22	n	0.00	0	34	0	34	n	0.09	3	29	3	29	n	0.03	1	35	1	35	n	0.04	1	23	1	23	n	0.00	0	16	0	16	n	0.04	1	24	1	24	n	0.00	0	22	0	22	n	0.00	0	34	0	34	n	ENSMUSG00000039197.11	Adk	chr14	protein_coding	adenosine kinase
novel_NIR_5610	chr14	21368251	21431571	+	21368251	21376660	3pMXE	ENSMUST00000223645.2	novel	0.00	0	45	0	45	n	0.11	4	32	4	32	n	0.17	9	43	9	43	y	0.19	5	22	5	22	y	0.13	5	34	5	34	n	0.15	5	29	5	29	y	0.15	6	35	6	35	y	0.12	3	23	3	23	n	0.00	0	16	0	16	n	0.04	1	24	1	24	n	0.19	5	22	5	22	y	0.00	0	34	0	34	n	ENSMUSG00000039197.11	Adk	chr14	protein_coding	adenosine kinase
novel_NIR_5611	chr14	21368251	21473571	+	21368251	21376660	3pMXE	ENSMUST00000223645.2	novel	0.08	4	45	4	45	n	0.06	2	32	2	32	n	0.20	11	43	11	43	y	0.00	0	22	0	22	n	0.24	11	34	11	34	y	0.03	1	29	1	29	n	0.00	0	35	0	35	n	0.00	0	23	0	23	n	0.00	0	16	0	16	n	0.29	10	24	10	24	y	0.00	0	22	0	22	n	0.03	1	34	1	34	n	ENSMUSG00000039197.11	Adk	chr14	protein_coding	adenosine kinase
novel_NIR_5612	chr14	21419174	21428742	+	21419174	21419807	3pMXE	ENSMUST00000224974.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000039197.11	Adk	chr14	protein_coding	adenosine kinase
novel_NIR_5613	chr14	21419174	21473571	+	21419174	21419807	3pMXE	ENSMUST00000224974.2	novel	0.71	5	2	5	2	y	-	-	-	-	-	-	0.50	2	2	2	2	y	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	7	0	7	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.78	7	2	7	2	y	ENSMUSG00000039197.11	Adk	chr14	protein_coding	adenosine kinase
novel_NIR_5614	chr14	21672796	21674901	+	21672155	21674901	A5SS	ENSMUST00000182855.8	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.18	2	9	2	9	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000021767.20	Kat6b	chr14	protein_coding	K(lysine) acetyltransferase 6B
novel_NIR_5615	chr14	21714816	21718402	+	21714816	21718399	A3SS	ENSMUST00000182855.8	novel	0.00	0	21	0	21	n	0.00	0	7	0	7	n	0.00	0	32	0	32	n	0.00	0	13	0	13	n	0.00	0	13	0	13	n	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.21	3	11	3	11	y	0.00	0	9	0	9	n	0.00	0	19	0	19	n	ENSMUSG00000021767.20	Kat6b	chr14	protein_coding	K(lysine) acetyltransferase 6B
novel_NIR_5616	chr14	21800848	21830154	+	21800848;21825623	21825031;21830154	ES	ENSMUST00000022292.10	novel	0.00	0	12.5	0	1;24	n	0.00	0	5.5	0	2;9	n	0.00	0	13.0	0	4;22	n	0.17	2	9.5	2	5;14	y	0.00	0	11.0	0	5;17	n	0.00	0	8.0	0	5;11	n	0.00	0	15.0	0	4;26	n	0.00	0	10.5	0	7;14	n	0.00	0	7.0	0	5;9	n	0.00	0	17.0	0	5;29	n	0.00	0	8.5	0	3;14	n	0.00	0	16.5	0	7;26	n	ENSMUSG00000021770.12	Samd8	chr14	protein_coding	sterile alpha motif domain containing 8
novel_NIR_5617	chr14	21801397	21825031	+	21800848	21825031	A5SS	ENSMUST00000022292.10	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.00	0	7	0	7	n	0.38	3	5	3	5	y	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.12	1	7	1	7	n	ENSMUSG00000021770.12	Samd8	chr14	protein_coding	sterile alpha motif domain containing 8
novel_NIR_5618	chr14	21801397	21825031	+	21800904	21825031	A5SS	ENSMUST00000144061.2	novel	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.07	1	14	1	14	n	0.00	0	7	0	7	n	0.11	1	8	1	8	n	0.00	0	11	0	11	n	1.00	3	0	3	0	y	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.10	1	9	1	9	n	ENSMUSG00000021770.12	Samd8	chr14	protein_coding	sterile alpha motif domain containing 8
novel_NIR_5619	chr14	21801397	21825031	+	21801672	21825031	5pMXE	ENSMUST00000119430.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	1.00	3	0	3	0	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.17	1	5	1	5	n	ENSMUSG00000021770.12	Samd8	chr14	protein_coding	sterile alpha motif domain containing 8
novel_NIR_5620	chr14	21804298	21825031	+	21800848	21825031	A5SS	ENSMUST00000022292.10	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.38	3	5	3	5	y	0.00	0	3	0	3	n	0.00	0	7	0	7	n	ENSMUSG00000021770.12	Samd8	chr14	protein_coding	sterile alpha motif domain containing 8
novel_NIR_5621	chr14	21804298	21825031	+	21800904	21825031	A5SS	ENSMUST00000144061.2	novel	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	-	-	-	-	-	-	0.50	3	3	3	3	y	0.00	0	4	0	4	n	0.00	0	9	0	9	n	ENSMUSG00000021770.12	Samd8	chr14	protein_coding	sterile alpha motif domain containing 8
novel_NIR_5622	chr14	21804298	21825031	+	21801672	21825031	A5SS	ENSMUST00000119430.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.60	3	2	3	2	y	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000021770.12	Samd8	chr14	protein_coding	sterile alpha motif domain containing 8
novel_NIR_5623	chr14	21881993	21882952	+	21881735	21882952	A5SS	ENSMUST00000173456.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000021771.15	Vdac2	chr14	protein_coding	voltage-dependent anion channel 2
novel_NIR_5624	chr14	22640166	22646493	+	22077395	22646493	A5SS	ENSMUST00000161249.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000063458.14	Lrmda	chr14	protein_coding	leucine rich melanocyte differentiation associated
novel_NIR_5625	chr14	22640166	22646493	+	22634613	22646493	A5SS	ENSMUST00000075639.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.75	3	1	3	1	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000063458.14	Lrmda	chr14	protein_coding	leucine rich melanocyte differentiation associated
novel_NIR_5626	chr14	24198456	24199431	-	24198459	24199431	A3SS	ENSMUST00000042009.13	novel	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	4	0	4	n	1.00	3	0	3	0	y	0.00	0	2	0	2	n	ENSMUSG00000021782.15	Dlg5	chr14	protein_coding	discs large MAGUK scaffold protein 5
novel_NIR_5627	chr14	24240569	24242860	-	24240569;24241359	24241216;24242860	ES	ENSMUST00000073687.13	novel	0.00	0	5.5	0	6;5	n	0.00	0	2.5	0	2;3	n	0.25	1	3.0	1	4;2	n	0.20	1	4.0	1	4;4	n	0.22	1	3.5	1	4;3	n	0.00	0	0.5	0	1;0	n	0.00	0	2.0	0	1;3	n	0.25	1	3.0	1	5;1	n	0.00	0	4.5	0	4;5	n	0.00	0	1.5	0	2;1	n	0.00	0	3.0	0	2;4	n	0.46	3	3.5	3	2;5	y	ENSMUSG00000021782.15	Dlg5	chr14	protein_coding	discs large MAGUK scaffold protein 5
novel_NIR_5628	chr14	24490596	24490967	-	24490596	24496365	A5SS	ENSMUST00000224174.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000114575.2	Gm47814	chr14	lncRNA	predicted gene, 47814
novel_NIR_5629	chr14	25537248	25541419	+	25537248	25546188	A3SS	ENSMUST00000160680.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000007817.16	Zmiz1	chr14	protein_coding	zinc finger, MIZ-type containing 1
novel_NIR_5630	chr14	25658697	25663364	+	25658697;25661945	25661691;25663364	ES	ENSMUST00000162645.8	novel	0.00	0	12.0	0	11;13	n	0.00	0	15.0	0	16;14	n	0.00	0	29.5	0	36;23	n	0.04	1	26.0	1	36;16	n	0.12	3	23.0	3	23;23	n	0.17	2	9.5	2	10;9	y	0.00	0	25.0	0	25;25	n	0.00	0	14.5	0	16;13	n	0.06	1	17.0	1	20;14	n	0.04	1	23.5	1	16;31	n	0.00	0	21.5	0	25;18	n	0.06	1	15.5	1	15;16	n	ENSMUSG00000007817.16	Zmiz1	chr14	protein_coding	zinc finger, MIZ-type containing 1
novel_NIR_5631	chr14	25757635	25767926	-	25757635	25769035	A5SS	ENSMUST00000069180.8	novel	0.03	2	63	2	63	n	0.09	5	51	5	51	n	0.17	14	69	14	69	y	0.11	13	105	13	105	n	0.07	8	112	8	112	n	0.08	4	45	4	45	n	0.01	1	66	1	66	n	0.01	1	66	1	66	n	0.04	3	75	3	75	n	0.12	16	113	16	113	n	0.17	11	55	11	55	y	0.10	12	113	12	113	n	ENSMUSG00000055538.8	Zcchc24	chr14	protein_coding	zinc finger, CCHC domain containing 24
novel_NIR_5632	chr14	25891279	25902844	-	25891279	25902705	A5SS	ENSMUST00000183431.8	novel	1.00	4	0	4	0	y	0.22	2	7	2	7	y	0.25	2	6	2	6	y	1.00	1	0	1	0	n	0.90	9	1	9	1	y	1.00	1	0	1	0	n	0.30	3	7	3	7	y	0.20	1	4	1	4	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	1.00	2	0	2	0	y	ENSMUSG00000095304.10	Plac9a	chr14	protein_coding	placenta specific 9a
novel_NIR_5633	chr14	25891279	25902844	-	25891279	25902803	A5SS	ENSMUST00000183725.2	novel	1.00	4	0	4	0	y	1.00	2	0	2	0	y	0.40	2	3	2	3	y	0.50	1	1	1	1	n	1.00	9	0	9	0	y	0.50	1	1	1	1	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.50	2	2	2	2	y	ENSMUSG00000095304.10	Plac9a	chr14	protein_coding	placenta specific 9a
novel_NIR_5634	chr14	25891279	25902844	-	25891279	25903210	A5SS	ENSMUST00000052286.16	novel	0.17	4	19	4	19	y	0.05	2	40	2	40	n	0.03	2	73	2	73	n	0.03	1	30	1	30	n	0.11	9	75	9	75	n	0.03	1	30	1	30	n	0.07	3	43	3	43	n	0.04	1	22	1	22	n	0.00	0	25	0	25	n	0.05	2	41	2	41	n	0.00	0	47	0	47	n	0.05	2	40	2	40	n	ENSMUSG00000095304.10	Plac9a	chr14	protein_coding	placenta specific 9a
novel_NIR_5635	chr14	25938818	25939883	+	25938818	25952340	A3SS	ENSMUST00000183436.2	novel	0.00	0	4	0	4	n	0.60	3	2	3	2	y	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.57	4	3	4	3	y	0.00	0	2	0	2	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000095975.4	Cphx1	chr14	protein_coding	cytoplasmic polyadenylated homeobox 1
novel_NIR_5636	chr14	25940465	25952340	+	25938818	25952340	A5SS	ENSMUST00000183436.2	novel	0.43	3	4	3	4	y	0.50	2	2	2	2	y	0.42	5	7	5	7	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.57	4	3	4	3	y	ENSMUSG00000095975.4	Cphx1	chr14	protein_coding	cytoplasmic polyadenylated homeobox 1
novel_NIR_5637	chr14	25940465	25952340	+	25943024	25952340	5pMXE	ENSMUST00000184016.3	novel	0.33	3	6	3	6	y	0.67	2	1	2	1	y	0.45	5	6	5	6	y	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.12	1	7	1	7	n	0.14	1	6	1	6	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.50	1	1	1	1	n	1.00	4	0	4	0	y	ENSMUSG00000095975.4	Cphx1	chr14	protein_coding	cytoplasmic polyadenylated homeobox 1
novel_NIR_5638	chr14	25942149	25952340	+	25938818	25952340	A5SS	ENSMUST00000183436.2	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.12	1	7	1	7	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000095975.4	Cphx1	chr14	protein_coding	cytoplasmic polyadenylated homeobox 1
novel_NIR_5639	chr14	25942149	25952340	+	25943024	25952340	5pMXE	ENSMUST00000184016.3	novel	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.14	1	6	1	6	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.22	2	7	2	7	y	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000095975.4	Cphx1	chr14	protein_coding	cytoplasmic polyadenylated homeobox 1
novel_NIR_5640	chr14	25943036	25952340	+	25938818	25952340	A5SS	ENSMUST00000183436.2	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000095975.4	Cphx1	chr14	protein_coding	cytoplasmic polyadenylated homeobox 1
novel_NIR_5641	chr14	25943036	25952340	+	25943024	25952340	A5SS	ENSMUST00000184016.3	novel	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.29	2	5	2	5	y	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000095975.4	Cphx1	chr14	protein_coding	cytoplasmic polyadenylated homeobox 1
novel_NIR_5642	chr14	26306587	26313388	+	26295337	26313388	A5SS	ENSMUST00000224378.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040818.11	Dennd6a	chr14	protein_coding	DENN/MADD domain containing 6A
novel_NIR_5643	chr14	26306587	26313388	+	26295386	26313388	A5SS	ENSMUST00000224111.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040818.11	Dennd6a	chr14	protein_coding	DENN/MADD domain containing 6A
novel_NIR_5644	chr14	26671535	26672509	-	26671587	26672509	A3SS	ENSMUST00000036570.5	novel	0.18	2	9	2	9	y	0.00	0	10	0	10	n	0.00	0	39	0	39	n	0.00	0	18	0	18	n	0.00	0	20	0	20	n	0.00	0	19	0	19	n	0.00	0	17	0	17	n	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.00	0	16	0	16	n	0.00	0	5	0	5	n	0.00	0	23	0	23	n	ENSMUSG00000040760.12	Appl1	chr14	protein_coding	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1
novel_NIR_5645	chr14	26681423	26684763	-	26681423	26682908	A5SS&ES	ENSMUST00000224406.2	novel	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	26	0	26	n	0.00	0	13	0	13	n	0.15	2	11	2	11	y	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	24	0	24	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	ENSMUSG00000040760.12	Appl1	chr14	protein_coding	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1
novel_NIR_5646	chr14	26682995	26684067	-	26682995	26685604	A5SS	ENSMUST00000224406.2	novel	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000040760.12	Appl1	chr14	protein_coding	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1
novel_NIR_5647	chr14	26682995;26684122	26684067;26684763	-	26682995	26684763	cassetteExon	ENSMUST00000036570.5	novel	0.00	0.0	4	0;0	4	n	0.05	0.5	9	1;0	9	n	0.00	0.0	33	0;0	33	n	0.07	0.5	7	1;0	7	n	0.00	0.0	19	0;0	19	n	0.04	0.5	13	1;0	13	n	0.00	0.0	8	0;0	8	n	0.00	0.0	17	0;0	17	n	0.15	2.5	14	2;3	14	y	0.00	0.0	11	0;0	11	n	0.00	0.0	11	0;0	11	n	0.00	0.0	14	0;0	14	n	ENSMUSG00000040760.12	Appl1	chr14	protein_coding	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1
novel_NIR_5648	chr14	26716479	26722551	+	26716479	26722580	A3SS	ENSMUST00000224331.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.78	7	2	7	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040726.11	Hesx1	chr14	protein_coding	homeobox gene expressed in ES cells
novel_NIR_5649	chr14	26836880;26837272	26837155;26874919	+	26836880;26866087	26865950;26874919	MXE	ENSMUST00000225949.2	novel	1.00	6.0	0.0	5;7	0;0	y	0.60	1.5	1.0	0;3	0;2	n	1.00	2.0	0.0	0;4	0;0	n	0.78	3.5	1.0	0;7	0;2	n	1.00	3.0	0.0	0;6	0;0	n	1.00	1.0	0.0	0;2	0;0	n	1.00	5.5	0.0	2;9	0;0	y	1.00	1.0	0.0	1;1	0;0	n	-	-	-	-	-	-	1.00	5.5	0.0	3;8	0;0	y	1.00	1.5	0.0	0;3	0;0	n	1.00	1.0	0.0	0;2	0;0	n	ENSMUSG00000021895.11	Arhgef3	chr14	protein_coding	Rho guanine nucleotide exchange factor (GEF) 3
novel_NIR_5650	chr14	26837272	26874919	+	26866087	26874919	A5SS&ES	ENSMUST00000225949.2	novel	1.00	7	0	7	0	n	0.60	3	2	3	2	y	1.00	4	0	4	0	y	0.78	7	2	7	2	y	1.00	6	0	6	0	y	1.00	2	0	2	0	y	1.00	9	0	9	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	8	0	8	0	n	1.00	3	0	3	0	y	1.00	2	0	2	0	y	ENSMUSG00000021895.11	Arhgef3	chr14	protein_coding	Rho guanine nucleotide exchange factor (GEF) 3
novel_NIR_5651	chr14	27202048	27202674	+	27202048	27202873	A3SS	ENSMUST00000225139.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	ENSMUSG00000040651.10	Tasor	chr14	protein_coding	transcription activation suppressor
novel_NIR_5652	chr14	27202048	27204255	+	27202048	27202873	A3SS	ENSMUST00000225139.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.43	3	4	3	4	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	ENSMUSG00000040651.10	Tasor	chr14	protein_coding	transcription activation suppressor
novel_NIR_5653	chr14	27202048	27204511	+	27202048	27202873	A3SS	ENSMUST00000225139.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	ENSMUSG00000040651.10	Tasor	chr14	protein_coding	transcription activation suppressor
novel_NIR_5654	chr14	27202048	27218480	+	27202048	27202873	3pMXE	ENSMUST00000225139.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	ENSMUSG00000040651.10	Tasor	chr14	protein_coding	transcription activation suppressor
novel_NIR_5655	chr14	27213902	27214976	-	27213906	27214976	A3SS	ENSMUST00000223689.2	novel	0.00	0	12	0	12	n	0.00	0	17	0	17	n	0.00	0	11	0	11	n	0.07	1	13	1	13	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.09	1	10	1	10	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.25	2	6	2	6	y	0.00	0	4	0	4	n	0.08	1	11	1	11	n	ENSMUSG00000046753.11	Ccdc66	chr14	protein_coding	coiled-coil domain containing 66
novel_NIR_5656	chr14	27540358	27598544	+	27499199	27598544	A5SS	ENSMUST00000210135.2	novel	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	ENSMUSG00000040640.12	Erc2	chr14	protein_coding	ELKS/RAB6-interacting/CAST family member 2
novel_NIR_5657	chr14	27540358	27598544	+	27575306	27598544	A5SS&ES	ENSMUST00000211636.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040640.12	Erc2	chr14	protein_coding	ELKS/RAB6-interacting/CAST family member 2
novel_NIR_5658	chr14	27540358	27598544	+	27595261	27598544	5pMXE	ENSMUST00000209476.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040640.12	Erc2	chr14	protein_coding	ELKS/RAB6-interacting/CAST family member 2
novel_NIR_5659	chr14	27540358	27598544	+	27598159	27598544	5pMXE	ENSMUST00000211684.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040640.12	Erc2	chr14	protein_coding	ELKS/RAB6-interacting/CAST family member 2
novel_NIR_5660	chr14	28024967	28105781	+	28024967	28039206	A3SS&ES	ENSMUST00000210135.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.67	2	1	2	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040640.12	Erc2	chr14	protein_coding	ELKS/RAB6-interacting/CAST family member 2
novel_NIR_5661	chr14	28024967	28105781	+	28024967	28197560	A3SS	ENSMUST00000090302.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000040640.12	Erc2	chr14	protein_coding	ELKS/RAB6-interacting/CAST family member 2
novel_NIR_5662	chr14	28385597	28425746	+	28385597	28391993	3pMXE	ENSMUST00000224853.2	novel	0.00	0	4	0	4	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000114818.2	Gm35164	chr14	lncRNA	predicted gene, 35164
novel_NIR_5663	chr14	28385597	28425746	+	28385597	28419548	3pMXE	ENSMUST00000224806.2	novel	0.00	0	12	0	12	n	0.33	2	4	2	4	y	0.00	0	1	0	1	n	0.00	0	11	0	11	n	0.11	1	8	1	8	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.05	1	18	1	18	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	ENSMUSG00000114818.2	Gm35164	chr14	lncRNA	predicted gene, 35164
novel_NIR_5664	chr14	28385597	28426239	+	28385597	28391993	3pMXE	ENSMUST00000224853.2	novel	0.56	5	4	5	4	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.75	6	2	6	2	y	-	-	-	-	-	-	1.00	3	0	3	0	y	0.50	7	7	7	7	y	0.40	2	3	2	3	y	0.25	1	3	1	3	n	ENSMUSG00000114818.2	Gm35164	chr14	lncRNA	predicted gene, 35164
novel_NIR_5665	chr14	28385597	28426239	+	28385597	28419548	3pMXE	ENSMUST00000224806.2	novel	0.29	5	12	5	12	y	0.50	4	4	4	4	y	0.00	0	1	0	1	n	0.15	2	11	2	11	y	0.00	0	8	0	8	n	-	-	-	-	-	-	0.67	6	3	6	3	y	-	-	-	-	-	-	0.14	3	18	3	18	n	0.33	7	14	7	14	y	0.22	2	7	2	7	y	0.10	1	9	1	9	n	ENSMUSG00000114818.2	Gm35164	chr14	lncRNA	predicted gene, 35164
novel_NIR_5666	chr14	28392051	28419548	+	28385597	28419548	A5SS	ENSMUST00000224806.2	novel	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.50	3	3	3	3	y	-	-	-	-	-	-	0.00	0	18	0	18	n	0.26	5	14	5	14	y	0.12	1	7	1	7	n	0.00	0	9	0	9	n	ENSMUSG00000114818.2	Gm35164	chr14	lncRNA	predicted gene, 35164
novel_NIR_5667	chr14	28744173	28749216	+	28744173	28749281	A3SS	ENSMUST00000055662.4	novel	0.12	1	7	1	7	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	15	0	15	n	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	ENSMUSG00000045776.4	Lrtm1	chr14	protein_coding	leucine-rich repeats and transmembrane domains 1
novel_NIR_5668	chr14	28744173	28749216	+	28744173	28749388	A3SS	ENSMUST00000224760.2	novel	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.67	2	1	2	1	y	0.00	0	3	0	3	n	ENSMUSG00000045776.4	Lrtm1	chr14	protein_coding	leucine-rich repeats and transmembrane domains 1
novel_NIR_5669	chr14	29700545	29704593	+	29700545	29704556	A3SS	ENSMUST00000016115.6	novel	0.00	0	38	0	38	n	0.15	6	35	6	35	y	0.09	6	58	6	58	n	0.02	1	64	1	64	n	0.00	0	86	0	86	n	0.06	2	33	2	33	n	0.02	1	55	1	55	n	0.00	0	39	0	39	n	0.00	0	41	0	41	n	0.06	4	64	4	64	n	0.07	3	39	3	39	n	0.03	2	69	2	69	n	ENSMUSG00000015971.6	Actr8	chr14	protein_coding	ARP8 actin-related protein 8
novel_NIR_5670	chr14	29715102	29715207	+	29715102	29727948	A3SS	ENSMUST00000224797.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000015971.6	Actr8	chr14	protein_coding	ARP8 actin-related protein 8
novel_NIR_5671	chr14	29731173	29749056	+	29748942	29749056	A5SS&ES	ENSMUST00000125796.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000015970.20	Chdh	chr14	protein_coding	choline dehydrogenase
novel_NIR_5672	chr14	29731173	29753042	+	29744796	29753042	5pMXE	ENSMUST00000118917.2	novel	0.67	2	1	2	1	y	1.00	7	0	7	0	y	1.00	2	0	2	0	y	1.00	10	0	10	0	y	1.00	13	0	13	0	y	1.00	6	0	6	0	y	1.00	9	0	9	0	y	1.00	8	0	8	0	y	1.00	3	0	3	0	y	1.00	13	0	13	0	y	0.90	9	1	9	1	y	1.00	10	0	10	0	y	ENSMUSG00000015970.20	Chdh	chr14	protein_coding	choline dehydrogenase
novel_NIR_5673	chr14	29731190	29743212	+	29731190	29748728	A3SS	ENSMUST00000125796.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000015970.20	Chdh	chr14	protein_coding	choline dehydrogenase
novel_NIR_5674	chr14	29731190	29743215	+	29731190	29748728	A3SS	ENSMUST00000125796.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000015970.20	Chdh	chr14	protein_coding	choline dehydrogenase
novel_NIR_5675	chr14	29731190	29744665	+	29731190	29748728	A3SS	ENSMUST00000125796.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000015970.20	Chdh	chr14	protein_coding	choline dehydrogenase
novel_NIR_5676	chr14	29732348	29753042	+	29744796	29753042	5pMXE	ENSMUST00000118917.2	novel	0.86	6	1	6	1	y	-	-	-	-	-	-	1.00	12	0	12	0	y	1.00	14	0	14	0	y	1.00	10	0	10	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	18	0	18	0	y	0.00	0	1	0	1	n	1.00	8	0	8	0	y	ENSMUSG00000015970.20	Chdh	chr14	protein_coding	choline dehydrogenase
novel_NIR_5677	chr14	29749159	29753042	+	29744796	29753042	A5SS	ENSMUST00000118917.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	ENSMUSG00000015970.20	Chdh	chr14	protein_coding	choline dehydrogenase
novel_NIR_5678	chr14	29788063	29792942	-	29788121	29792942	A3SS	ENSMUST00000225717.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.33	2	4	2	4	y	0.25	1	3	1	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000015968.19	Cacna1d	chr14	protein_coding	calcium channel, voltage-dependent, L type, alpha 1D subunit
novel_NIR_5679	chr14	30270571	30271193	+	30270571	30270959	3pMXE	ENSMUST00000160274.2	novel	0.00	0	6	0	6	n	0.33	1	2	1	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	9	0	9	n	1.00	1	0	1	0	n	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.50	3	3	3	3	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000021957.8	Tkt	chr14	protein_coding	transketolase
novel_NIR_5680	chr14	30270571	30293109	+	30270571	30270959	3pMXE	ENSMUST00000160274.2	novel	0.33	3	6	3	6	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000021957.8	Tkt	chr14	protein_coding	transketolase
novel_NIR_5681	chr14	30380351	30381073	+	30380351	30380689	A3SS&ES	ENSMUST00000228211.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000052395.18	Rft1	chr14	protein_coding	RFT1 homolog
novel_NIR_5682	chr14	30385136	30396127	+	30385136	30385231	3pMXE	ENSMUST00000227338.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000052395.18	Rft1	chr14	protein_coding	RFT1 homolog
novel_NIR_5683	chr14	30437832	30460496	+	30437198	30460496	A5SS	ENSMUST00000227201.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	3	0	3	0	y	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000006527.17	Sfmbt1	chr14	protein_coding	Scm-like with four mbt domains 1
novel_NIR_5684	chr14	30437832	30460496	+	30437832	30487920	A3SS	ENSMUST00000054230.12	novel	0.20	1	4	1	4	n	0.11	1	8	1	8	n	0.31	4	9	4	9	y	0.33	2	4	2	4	y	0.44	4	5	4	5	y	0.20	3	12	3	12	y	0.14	2	12	2	12	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.09	1	10	1	10	n	0.00	0	8	0	8	n	0.10	1	9	1	9	n	ENSMUSG00000006527.17	Sfmbt1	chr14	protein_coding	Scm-like with four mbt domains 1
novel_NIR_5685	chr14	30438545	30460496	+	30437198	30460496	A5SS	ENSMUST00000227201.2	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000006527.17	Sfmbt1	chr14	protein_coding	Scm-like with four mbt domains 1
novel_NIR_5686	chr14	30438545	30460496	+	30438545	30487920	A3SS	ENSMUST00000228006.2	novel	1.00	2	0	2	0	y	0.33	1	2	1	2	n	0.67	2	1	2	1	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.60	3	2	3	2	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000006527.17	Sfmbt1	chr14	protein_coding	Scm-like with four mbt domains 1
novel_NIR_5687	chr14	30516778	30518283	+	30512773	30518283	A5SS	ENSMUST00000112184.10	novel	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	26	0	26	n	0.00	0	17	0	17	n	0.00	0	29	0	29	n	0.00	0	10	0	10	n	0.00	0	19	0	19	n	0.17	2	10	2	10	y	0.00	0	18	0	18	n	0.00	0	20	0	20	n	0.00	0	14	0	14	n	0.00	0	22	0	22	n	ENSMUSG00000006527.17	Sfmbt1	chr14	protein_coding	Scm-like with four mbt domains 1
novel_NIR_5688	chr14	30591712	30592708	+	30588701	30592708	A5SS	ENSMUST00000006701.8	novel	0.04	1	24	1	24	n	0.03	1	37	1	37	n	0.15	8	44	8	44	y	0.00	0	48	0	48	n	0.02	1	45	1	45	n	0.00	0	38	0	38	n	0.02	1	45	1	45	n	0.00	0	36	0	36	n	0.00	0	22	0	22	n	0.02	1	41	1	41	n	0.00	0	35	0	35	n	0.00	0	22	0	22	n	ENSMUSG00000006526.14	Stimate	chr14	protein_coding	STIM activating enhancer
novel_NIR_5689	chr14	30634767	30634833	-	30634767	30635118	A5SS	ENSMUST00000226547.2	novel	0.00	0	15	0	15	n	0.00	0	15	0	15	n	0.23	5	17	5	17	n	0.00	0	16	0	16	n	0.18	7	31	7	31	n	0.53	8	7	8	7	y	0.00	0	22	0	22	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.26	5	14	5	14	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	ENSMUSG00000006522.18	Itih3	chr14	protein_coding	inter-alpha trypsin inhibitor, heavy chain 3
novel_NIR_5690	chr14	30634767;30634857	30634833;30635118	-	30634767	30635118	cassetteExon	ENSMUST00000226547.2	novel	0.00	0.0	15	0;0	15	n	0.03	0.5	15	0;1	15	n	0.19	4.0	17	5;3	17	y	0.09	1.5	16	0;3	16	n	0.13	4.5	31	7;2	31	n	0.36	4.0	7	8;0	7	n	0.10	2.5	22	0;5	22	n	0.00	0.0	15	0;0	15	n	0.00	0.0	9	0;0	9	n	0.18	3.0	14	5;1	14	n	0.00	0.0	11	0;0	11	n	0.00	0.0	16	0;0	16	n	ENSMUSG00000006522.18	Itih3	chr14	protein_coding	inter-alpha trypsin inhibitor, heavy chain 3
novel_NIR_5691	chr14	30634767;30634871	30634833;30635118	-	30634767	30635118	cassetteExon	ENSMUST00000226547.2	novel	0.17	3.0	15	0;6	15	n	0.09	1.5	15	0;3	15	n	0.15	3.0	17	5;1	17	n	0.00	0.0	16	0;0	16	n	0.16	6.0	31	7;5	31	y	0.36	4.0	7	8;0	7	n	0.08	2.0	22	0;4	22	n	0.12	2.0	15	0;4	15	n	0.10	1.0	9	0;2	9	n	0.15	2.5	14	5;0	14	n	0.00	0.0	11	0;0	11	n	0.00	0.0	16	0;0	16	n	ENSMUSG00000006522.18	Itih3	chr14	protein_coding	inter-alpha trypsin inhibitor, heavy chain 3
novel_NIR_5692	chr14	30635153	30636610	-	30635150	30636610	A3SS	ENSMUST00000228114.2	novel	0.26	38	111	38	111	y	0.31	46	104	46	104	y	0.13	49	327	49	327	n	0.00	0	85	0	85	n	0.12	27	199	27	199	n	0.00	0	122	0	122	n	0.33	56	113	56	113	y	0.00	0	114	0	114	n	0.00	0	43	0	43	n	0.00	0	72	0	72	n	0.00	0	38	0	38	n	0.04	4	88	4	88	n	ENSMUSG00000006522.18	Itih3	chr14	protein_coding	inter-alpha trypsin inhibitor, heavy chain 3
novel_NIR_5693	chr14	30635153	30636610	-	30636008	30636610	A3SS&ES	ENSMUST00000006697.17	novel	1.00	38	0	38	0	y	1.00	46	0	46	0	y	1.00	49	0	49	0	y	0.00	0	7988	0	7988	n	1.00	27	0	27	0	y	-	-	-	-	-	-	1.00	56	0	56	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000006522.18	Itih3	chr14	protein_coding	inter-alpha trypsin inhibitor, heavy chain 3
novel_NIR_5694	chr14	30636157	30636610	-	30636008	30636610	A3SS	ENSMUST00000006697.17	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	7988	0	7988	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000006522.18	Itih3	chr14	protein_coding	inter-alpha trypsin inhibitor, heavy chain 3
novel_NIR_5695	chr14	30674017	30675760	+	30673782	30675760	A5SS	ENSMUST00000227602.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021918.11	Nek4	chr14	protein_coding	NIMA (never in mitosis gene a)-related expressed kinase 4
novel_NIR_5696	chr14	30674017	30675760	+	30675608	30675760	A5SS&ES	ENSMUST00000050171.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.29	2	5	2	5	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000021918.11	Nek4	chr14	protein_coding	NIMA (never in mitosis gene a)-related expressed kinase 4
novel_NIR_5697	chr14	30723834	30728416	+	30723385	30728416	A5SS	ENSMUST00000168584.9	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000021916.17	Glt8d1	chr14	protein_coding	glycosyltransferase 8 domain containing 1
novel_NIR_5698	chr14	30723834	30728416	+	30723954	30728416	A5SS	ENSMUST00000022476.9	novel	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	17	0	17	n	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.06	1	15	1	15	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.20	2	8	2	8	y	0.00	0	15	0	15	n	ENSMUSG00000021916.17	Glt8d1	chr14	protein_coding	glycosyltransferase 8 domain containing 1
novel_NIR_5699	chr14	30723834	30728416	+	30726747	30728416	A5SS&ES	ENSMUST00000226378.2	novel	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.10	1	9	1	9	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.00	0	3	0	3	n	ENSMUSG00000021916.17	Glt8d1	chr14	protein_coding	glycosyltransferase 8 domain containing 1
novel_NIR_5700	chr14	30723954	30726652	+	30723385	30726652	A5SS	ENSMUST00000226378.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000021916.17	Glt8d1	chr14	protein_coding	glycosyltransferase 8 domain containing 1
novel_NIR_5701	chr14	30723954	30726652	+	30723954	30726675	A3SS	ENSMUST00000228718.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000021916.17	Glt8d1	chr14	protein_coding	glycosyltransferase 8 domain containing 1
novel_NIR_5702	chr14	30731727	30732038	+	30731809	30732038	A5SS	ENSMUST00000168584.9	novel	0.00	0	20	0	20	n	0.11	1	8	1	8	n	0.13	6	39	6	39	n	0.15	6	33	6	33	y	0.14	4	24	4	24	n	0.05	1	21	1	21	n	0.00	0	32	0	32	n	0.00	0	25	0	25	n	0.20	3	12	3	12	y	0.00	0	16	0	16	n	0.06	1	15	1	15	n	0.17	4	20	4	20	y	ENSMUSG00000021916.17	Glt8d1	chr14	protein_coding	glycosyltransferase 8 domain containing 1
novel_NIR_5703	chr14	30732987	30733151	+	30732987	30733080	A3SS	ENSMUST00000228255.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000021916.17	Glt8d1	chr14	protein_coding	glycosyltransferase 8 domain containing 1
novel_NIR_5704	chr14	30741891	30744677	+	30741250	30744677	A5SS	ENSMUST00000112098.11	novel	0.20	1	4	1	4	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000042323.18	Pbrm1	chr14	protein_coding	polybromo 1
novel_NIR_5705	chr14	30744816	30747458	+	30741250	30747458	A5SS	ENSMUST00000052239.12	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000042323.18	Pbrm1	chr14	protein_coding	polybromo 1
novel_NIR_5706	chr14	30744816	30747458	+	30744816	30745024	A3SS&ES	ENSMUST00000146325.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000042323.18	Pbrm1	chr14	protein_coding	polybromo 1
novel_NIR_5707	chr14	30744816	30747458	+	30744816	30747455	A3SS	ENSMUST00000112098.11	novel	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	ENSMUSG00000042323.18	Pbrm1	chr14	protein_coding	polybromo 1
novel_NIR_5708	chr14	30849279	30850590	-	30810983	30850590	A3SS	ENSMUST00000203261.3	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	0.75	3	1	3	1	y	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.50	1	1	1	1	n	1.00	3	0	3	0	y	1.00	5	0	5	0	y	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000058351.12	Smim4	chr14	protein_coding	small integral membrane protein 4
novel_NIR_5709	chr14	30849279	30850590	-	30846790	30850590	A3SS	ENSMUST00000090205.5	novel	0.00	0	9	0	9	n	0.08	1	12	1	12	n	0.36	4	7	4	7	y	0.20	3	12	3	12	y	0.18	2	9	2	9	y	0.00	0	6	0	6	n	0.04	1	24	1	24	n	0.33	3	6	3	6	y	0.38	5	8	5	8	y	0.35	7	13	7	13	y	0.00	0	3	0	3	n	0.43	3	4	3	4	y	ENSMUSG00000058351.12	Smim4	chr14	protein_coding	small integral membrane protein 4
novel_NIR_5710	chr14	30861805	30862105	-	30861281	30862105	A3SS	ENSMUST00000159208.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000042286.14	Stab1	chr14	protein_coding	stabilin 1
novel_NIR_5711	chr14	30862050	30862105	-	30861281	30862105	A3SS	ENSMUST00000159208.8	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000042286.14	Stab1	chr14	protein_coding	stabilin 1
novel_NIR_5712	chr14	30864993	30865075	-	30864968	30865075	A3SS	ENSMUST00000159249.2	novel	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000042286.14	Stab1	chr14	protein_coding	stabilin 1
novel_NIR_5713	chr14	30869123	30869444	-	30869234	30869444	A3SS&ES	ENSMUST00000036618.14	novel	0.00	0	19	0	19	n	0.00	0	11	0	11	n	0.00	0	21	0	21	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	20	0	20	n	0.19	3	13	3	13	y	0.00	0	9	0	9	n	ENSMUSG00000042286.14	Stab1	chr14	protein_coding	stabilin 1
novel_NIR_5714	chr14	30869751	30869843	-	30869761	30869843	A3SS	ENSMUST00000036618.14	novel	0.00	0	28	0	28	n	0.00	0	13	0	13	n	0.00	0	31	0	31	n	0.00	0	14	0	14	n	0.00	0	34	0	34	n	0.00	0	21	0	21	n	0.13	3	20	3	20	n	0.25	2	6	2	6	y	0.00	0	8	0	8	n	0.00	0	15	0	15	n	0.09	1	10	1	10	n	0.00	0	20	0	20	n	ENSMUSG00000042286.14	Stab1	chr14	protein_coding	stabilin 1
novel_NIR_5715	chr14	30873508	30873641	-	30873537	30873641	A3SS	ENSMUST00000036618.14	novel	0.00	0	7	0	7	n	0.33	1	2	1	2	n	0.00	0	20	0	20	n	0.00	0	8	0	8	n	0.00	0	25	0	25	n	0.00	0	15	0	15	n	0.00	0	11	0	11	n	0.12	1	7	1	7	n	0.00	0	2	0	2	n	0.27	3	8	3	8	y	0.11	1	8	1	8	n	0.00	0	6	0	6	n	ENSMUSG00000042286.14	Stab1	chr14	protein_coding	stabilin 1
novel_NIR_5716	chr14	30896778	30898287	-	30896849	30898287	A3SS	ENSMUST00000163552.2	novel	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.44	4	5	4	5	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	ENSMUSG00000021910.16	Nisch	chr14	protein_coding	nischarin
novel_NIR_5717	chr14	30902889	30904456	-	30902906	30904456	A3SS	ENSMUST00000170436.8	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	36	0	36	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.00	0	24	0	24	n	0.00	0	8	0	8	n	0.00	0	17	0	17	n	0.00	0	5	0	5	n	0.58	7	5	7	5	y	0.00	0	10	0	10	n	0.00	0	4	0	4	n	ENSMUSG00000021910.16	Nisch	chr14	protein_coding	nischarin
novel_NIR_5718	chr14	30902906	30904470	-	30902906	30904456	A5SS	ENSMUST00000170436.8	novel	0.50	6	6	6	6	y	0.00	0	2	0	2	n	0.27	13	36	13	36	y	0.15	2	11	2	11	y	0.55	17	14	17	14	y	0.29	10	24	10	24	y	0.38	5	8	5	8	y	0.35	9	17	9	17	y	0.00	0	5	0	5	n	0.44	4	5	4	5	y	0.29	4	10	4	10	y	0.33	2	4	2	4	y	ENSMUSG00000021910.16	Nisch	chr14	protein_coding	nischarin
novel_NIR_5719	chr14	30902906	30904470	-	30902906	30906899	A5SS	ENSMUST00000168206.8	novel	0.12	6	44	6	44	n	0.00	0	24	0	24	n	0.33	13	26	13	26	n	0.04	2	51	2	51	n	0.32	17	36	17	36	y	0.33	10	20	10	20	y	0.13	5	33	5	33	n	0.29	9	22	9	22	y	0.00	0	31	0	31	n	0.08	4	45	4	45	n	0.11	4	31	4	31	n	0.05	2	38	2	38	n	ENSMUSG00000021910.16	Nisch	chr14	protein_coding	nischarin
novel_NIR_5720	chr14	30902906;30904593	30904470;30906899	-	30902906	30906899	cassetteExon	ENSMUST00000168206.8	novel	0.06	3.0	44	6;0	44	n	0.00	0.0	24	0;0	24	n	0.22	7.5	26	13;2	26	y	0.02	1.0	51	2;0	51	n	0.19	8.5	36	17;0	36	n	0.20	5.0	20	10;0	20	n	0.07	2.5	33	5;0	33	n	0.17	4.5	22	9;0	22	n	0.00	0.0	31	0;0	31	n	0.04	2.0	45	4;0	45	n	0.06	2.0	31	4;0	31	n	0.03	1.0	38	2;0	38	n	ENSMUSG00000021910.16	Nisch	chr14	protein_coding	nischarin
novel_NIR_5721	chr14	30904593	30906899	-	30904597	30906899	A3SS	ENSMUST00000170436.8	novel	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.22	2	7	2	7	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	ENSMUSG00000021910.16	Nisch	chr14	protein_coding	nischarin
novel_NIR_5722	chr14	30904597	30906198	-	30904597	30906899	A5SS	ENSMUST00000170436.8	novel	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.12	1	7	1	7	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.17	1	5	1	5	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.29	2	5	2	5	y	ENSMUSG00000021910.16	Nisch	chr14	protein_coding	nischarin
novel_NIR_5723	chr14	30910751	30912953	-	30909675	30912953	A3SS	ENSMUST00000170343.8	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000021910.16	Nisch	chr14	protein_coding	nischarin
novel_NIR_5724	chr14	30927310	30931760	+	30930335	30931760	5pMXE	ENSMUST00000169169.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.03	1	38	1	38	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	5	0	5	0	y	0.00	0	1	0	1	n	ENSMUSG00000091898.9	Tnnc1	chr14	protein_coding	troponin C, cardiac/slow skeletal
novel_NIR_5725	chr14	30927385	30931760	+	30930335	30931760	5pMXE	ENSMUST00000169169.8	novel	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	38	0	38	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000091898.9	Tnnc1	chr14	protein_coding	troponin C, cardiac/slow skeletal
novel_NIR_5726	chr14	30927870	30931760	+	30930335	30931760	5pMXE	ENSMUST00000169169.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	38	0	38	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000091898.9	Tnnc1	chr14	protein_coding	troponin C, cardiac/slow skeletal
novel_NIR_5727	chr14	30929301	30931760	+	30930335	30931760	5pMXE	ENSMUST00000169169.8	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	38	0	38	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	ENSMUSG00000091898.9	Tnnc1	chr14	protein_coding	troponin C, cardiac/slow skeletal
novel_NIR_5728	chr14	30978748	30979462	+	30978748	30979583	A3SS	ENSMUST00000187156.2	novel	0.25	1	3	1	3	n	0.17	1	5	1	5	n	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.17	1	5	1	5	n	0.17	1	5	1	5	n	0.00	0	8	0	8	n	1.00	4	0	4	0	y	0.33	1	2	1	2	n	0.27	3	8	3	8	y	0.00	0	6	0	6	n	ENSMUSG00000021901.11	Bap1	chr14	protein_coding	Brca1 associated protein 1
novel_NIR_5729	chr14	31066560	31067416	+	31066556	31067416	A5SS	ENSMUST00000022451.14	novel	0.04	1	24	1	24	n	0.08	2	22	2	22	n	0.02	1	48	1	48	n	0.03	1	36	1	36	n	0.02	1	48	1	48	n	0.17	4	20	4	20	y	0.07	3	37	3	37	n	0.23	7	24	7	24	y	0.00	0	24	0	24	n	0.00	0	38	0	38	n	0.11	2	17	2	17	n	0.00	0	34	0	34	n	ENSMUSG00000021893.15	Capn7	chr14	protein_coding	calpain 7
novel_NIR_5730	chr14	31109840	31127811	-	31109840	31129316	A5SS	ENSMUST00000147586.2	novel	0.50	1	1	1	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000021892.15	Sh3bp5	chr14	protein_coding	SH3-domain binding protein 5 (BTK-associated)
novel_NIR_5731	chr14	31133626	31150301	-	31133626	31139368	5pMXE	ENSMUST00000100730.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021892.15	Sh3bp5	chr14	protein_coding	SH3-domain binding protein 5 (BTK-associated)
novel_NIR_5732	chr14	31215924	31216859	-	31215921	31216859	A3SS	ENSMUST00000227777.2	novel	0.00	0	25	0	25	n	0.00	0	17	0	17	n	0.15	7	39	7	39	y	0.00	0	24	0	24	n	0.07	3	38	3	38	n	0.00	0	13	0	13	n	0.00	0	31	0	31	n	0.05	1	20	1	20	n	0.09	3	29	3	29	n	0.03	1	37	1	37	n	0.06	1	16	1	16	n	0.03	1	31	1	31	n	ENSMUSG00000021891.9	Mettl6	chr14	protein_coding	methyltransferase like 6
novel_NIR_5733	chr14	31321609	31329924	-	31321609;31322279	31322153;31329924	ES	ENSMUST00000156431.8	novel	0.00	0	0.5	0	1;0	n	0.00	0	0.5	0	0;1	n	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	0.00	0	2.0	0	3;1	n	0.00	0	1.0	0	2;0	n	0.00	0	1.0	0	0;2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	0.00	0	0.5	0	0;1	n	ENSMUSG00000021884.19	Hacl1	chr14	protein_coding	2-hydroxyacyl-CoA lyase 1
novel_NIR_5734	chr14	31341018	31341802	-	31338471	31341802	A3SS	ENSMUST00000167066.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	47	0	47	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021884.19	Hacl1	chr14	protein_coding	2-hydroxyacyl-CoA lyase 1
novel_NIR_5735	chr14	31352995	31353447	-	31352995	31356156	A5SS	ENSMUST00000171414.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000021884.19	Hacl1	chr14	protein_coding	2-hydroxyacyl-CoA lyase 1
novel_NIR_5736	chr14	31354925	31356160	-	31354925	31357701	A5SS	ENSMUST00000127204.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	7	0	7	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000021884.19	Hacl1	chr14	protein_coding	2-hydroxyacyl-CoA lyase 1
novel_NIR_5737	chr14	31354925	31356160	-	31354925	31362451	A5SS	ENSMUST00000134626.8	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.78	7	2	7	2	y	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	ENSMUSG00000021884.19	Hacl1	chr14	protein_coding	2-hydroxyacyl-CoA lyase 1
novel_NIR_5738	chr14	31356236	31362451	-	31354925	31362451	A3SS	ENSMUST00000134626.8	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.17	2	10	2	10	y	0.00	0	3	0	3	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	ENSMUSG00000021884.19	Hacl1	chr14	protein_coding	2-hydroxyacyl-CoA lyase 1
novel_NIR_5739	chr14	31356424	31357701	-	31354925	31357701	A3SS	ENSMUST00000127204.9	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.25	2	6	2	6	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000021884.19	Hacl1	chr14	protein_coding	2-hydroxyacyl-CoA lyase 1
novel_NIR_5740	chr14	31384158	31387839	+	31363092	31387839	A5SS	ENSMUST00000128014.2	novel	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	16	0	16	n	0.29	4	10	4	10	y	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.06	1	16	1	16	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.29	4	10	4	10	y	ENSMUSG00000021900.11	Btd	chr14	protein_coding	biotinidase
novel_NIR_5741	chr14	31500962	31538037	-	31500962	31502122	5pMXE	ENSMUST00000227863.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	5	0	5	0	y	ENSMUSG00000014496.9	Ankrd28	chr14	protein_coding	ankyrin repeat domain 28
novel_NIR_5742	chr14	31500962	31538037	-	31500962	31503660	5pMXE	ENSMUST00000227089.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	5	0	5	0	y	ENSMUSG00000014496.9	Ankrd28	chr14	protein_coding	ankyrin repeat domain 28
novel_NIR_5743	chr14	31500962	31538037	-	31500962	31552284	A5SS	ENSMUST00000014640.9	novel	0.00	0	8	0	8	n	0.33	1	2	1	2	n	0.06	1	15	1	15	n	0.00	0	21	0	21	n	0.06	1	15	1	15	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.29	2	5	2	5	y	0.00	0	12	0	12	n	0.38	3	5	3	5	y	0.20	5	20	5	20	y	ENSMUSG00000014496.9	Ankrd28	chr14	protein_coding	ankyrin repeat domain 28
novel_NIR_5744	chr14	31821588	31822947	+	31821588	31822912	A3SS	ENSMUST00000164868.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000021906.15	Oxnad1	chr14	protein_coding	oxidoreductase NAD-binding domain containing 1
novel_NIR_5745	chr14	31911211	31915360	-	31911211	31920926	A5SS	ENSMUST00000170331.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	ENSMUSG00000013701.14	Timm23	chr14	protein_coding	translocase of inner mitochondrial membrane 23
novel_NIR_5746	chr14	31913357	31915365	-	31913357	31913663	5pMXE	ENSMUST00000168139.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.80	4	1	4	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000013701.14	Timm23	chr14	protein_coding	translocase of inner mitochondrial membrane 23
novel_NIR_5747	chr14	31925741	31930114	+	31924142	31930114	A5SS	ENSMUST00000171279.2	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000021911.17	Parg	chr14	protein_coding	poly (ADP-ribose) glycohydrolase
novel_NIR_5748	chr14	31925741	31930114	+	31924422	31930114	A5SS	ENSMUST00000164137.8	novel	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	15	0	15	n	0.11	1	8	1	8	n	0.00	0	14	0	14	n	0.19	3	13	3	13	y	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	15	0	15	n	ENSMUSG00000021911.17	Parg	chr14	protein_coding	poly (ADP-ribose) glycohydrolase
novel_NIR_5749	chr14	31930180	31930674	+	31930180	31930649	A3SS	ENSMUST00000170637.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.60	3	2	3	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000021911.17	Parg	chr14	protein_coding	poly (ADP-ribose) glycohydrolase
novel_NIR_5750	chr14	31930180	31930674	+	31930180	31930669	A3SS	ENSMUST00000164137.8	novel	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	25	0	25	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.30	3	7	3	7	y	0.00	0	26	0	26	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	ENSMUSG00000021911.17	Parg	chr14	protein_coding	poly (ADP-ribose) glycohydrolase
novel_NIR_5751	chr14	32235556	32238900	+	32235556	32238904	A3SS	ENSMUST00000066807.8	novel	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.88	7	1	7	1	y	1.00	1	0	1	0	n	0.40	4	6	4	6	y	0.40	2	3	2	3	y	0.67	4	2	4	2	y	0.25	1	3	1	3	n	-	-	-	-	-	-	0.60	3	2	3	2	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000054051.8	Ercc6	chr14	protein_coding	excision repair cross-complementing rodent repair deficiency, complementation group 6
novel_NIR_5752	chr14	32248835	32257474	+	32248835	32263183	A3SS	ENSMUST00000066807.8	novel	0.00	0	9	0	9	n	0.20	1	4	1	4	n	0.06	1	15	1	15	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.09	1	10	1	10	n	ENSMUSG00000054051.8	Ercc6	chr14	protein_coding	excision repair cross-complementing rodent repair deficiency, complementation group 6
novel_NIR_5753	chr14	32263311	32263872	+	32263311	32268702	A3SS	ENSMUST00000066807.8	novel	0.12	1	7	1	7	n	0.00	0	1	0	1	n	0.37	7	12	7	12	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.17	1	5	1	5	n	0.40	2	3	2	3	y	0.17	1	5	1	5	n	0.25	1	3	1	3	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	ENSMUSG00000054051.8	Ercc6	chr14	protein_coding	excision repair cross-complementing rodent repair deficiency, complementation group 6
novel_NIR_5754	chr14	32263311;32263986	32263872;32268702	+	32263311	32268702	cassetteExon	ENSMUST00000066807.8	novel	0.12	1.0	7	1;1	7	n	0.00	0.0	1	0;0	1	n	0.31	5.5	12	7;4	12	y	0.00	0.0	8	0;0	8	n	0.00	0.0	9	0;0	9	n	0.09	0.5	5	1;0	5	n	0.25	1.0	3	2;0	3	n	0.23	1.5	5	1;2	5	n	0.14	0.5	3	1;0	3	n	0.00	0.0	8	0;0	8	n	0.00	0.0	2	0;0	2	n	0.00	0.0	9	0;0	9	n	ENSMUSG00000054051.8	Ercc6	chr14	protein_coding	excision repair cross-complementing rodent repair deficiency, complementation group 6
novel_NIR_5755	chr14	33971328	33974484	-	33971328	34030997	A5SS	ENSMUST00000228704.2	novel	1.00	2	0	2	0	y	0.50	2	2	2	2	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	0.00	0	1	0	1	n	ENSMUSG00000041471.10	Shld2	chr14	protein_coding	shieldin complex subunit 2
novel_NIR_5756	chr14	33971328	33981413	-	33971328	34030997	A5SS	ENSMUST00000228704.2	novel	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000041471.10	Shld2	chr14	protein_coding	shieldin complex subunit 2
novel_NIR_5757	chr14	33981689	34030997	-	33971328	34030997	A3SS	ENSMUST00000228704.2	novel	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000041471.10	Shld2	chr14	protein_coding	shieldin complex subunit 2
novel_NIR_5758	chr14	33981689	34030997	-	33990909	34030997	3pMXE	ENSMUST00000227375.2	novel	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.10	1	9	1	9	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.29	2	5	2	5	y	0.00	0	6	0	6	n	0.33	2	4	2	4	y	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	2	0	2	n	0.11	1	8	1	8	n	ENSMUSG00000041471.10	Shld2	chr14	protein_coding	shieldin complex subunit 2
novel_NIR_5759	chr14	33981689	34030997	-	33995533	34030997	3pMXE	ENSMUST00000228132.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	7	0	7	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	ENSMUSG00000041471.10	Shld2	chr14	protein_coding	shieldin complex subunit 2
novel_NIR_5760	chr14	33990909	33997224	-	33990909	33991428	A5SS&ES	ENSMUST00000111917.3	novel	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.07	1	14	1	14	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000041471.10	Shld2	chr14	protein_coding	shieldin complex subunit 2
novel_NIR_5761	chr14	33990909	33997224	-	33990909	34009049	A5SS	ENSMUST00000228626.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041471.10	Shld2	chr14	protein_coding	shieldin complex subunit 2
novel_NIR_5762	chr14	33991493	33996140	-	33991493	33995444	A5SS&ES	ENSMUST00000228337.2	novel	0.33	1	2	1	2	n	0.17	1	5	1	5	n	-	-	-	-	-	-	-	-	-	-	-	-	0.29	2	5	2	5	y	0.50	3	3	3	3	y	0.50	4	4	4	4	y	0.17	1	5	1	5	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041471.10	Shld2	chr14	protein_coding	shieldin complex subunit 2
novel_NIR_5763	chr14	33991493	33996140	-	33991493	34030997	A5SS	ENSMUST00000111917.3	novel	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.60	3	2	3	2	y	0.57	4	3	4	3	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041471.10	Shld2	chr14	protein_coding	shieldin complex subunit 2
novel_NIR_5764	chr14	33991493	33996140	-	33995533	33996140	A3SS&ES	ENSMUST00000227006.2	novel	0.33	1	2	1	2	n	0.14	1	6	1	6	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.09	2	20	2	20	n	0.18	3	14	3	14	y	0.18	4	18	4	18	y	0.11	1	8	1	8	n	0.33	1	2	1	2	n	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000041471.10	Shld2	chr14	protein_coding	shieldin complex subunit 2
novel_NIR_5765	chr14	33995533	33997224	-	33995533	33996140	5pMXE	ENSMUST00000227006.2	novel	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.22	2	7	2	7	y	0.00	0	6	0	6	n	0.00	0	20	0	20	n	0.00	0	14	0	14	n	0.00	0	18	0	18	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000041471.10	Shld2	chr14	protein_coding	shieldin complex subunit 2
novel_NIR_5766	chr14	33995533	33997224	-	33995533	34019116	A5SS	ENSMUST00000228337.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041471.10	Shld2	chr14	protein_coding	shieldin complex subunit 2
novel_NIR_5767	chr14	33995533	33997224	-	33995533	34030997	A5SS	ENSMUST00000228132.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000041471.10	Shld2	chr14	protein_coding	shieldin complex subunit 2
novel_NIR_5768	chr14	34051779	34056069	+	34054196	34056069	5pMXE	ENSMUST00000159784.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021794.17	Glud1	chr14	protein_coding	glutamate dehydrogenase 1
novel_NIR_5769	chr14	34060840	34064076	+	34058533	34064076	A5SS	ENSMUST00000163955.2	novel	0.00	0	34	0	34	n	0.33	13	27	13	27	y	0.31	8	18	8	18	y	0.08	2	23	2	23	n	0.23	12	41	12	41	y	0.40	8	12	8	12	y	0.22	11	39	11	39	y	0.21	3	11	3	11	y	0.29	6	15	6	15	y	0.16	9	48	9	48	y	0.35	14	26	14	26	y	0.09	4	39	4	39	n	ENSMUSG00000021794.17	Glud1	chr14	protein_coding	glutamate dehydrogenase 1
novel_NIR_5770	chr14	34061975	34063607	+	34061975	34063763	A3SS	ENSMUST00000161593.2	novel	0.50	4	4	4	4	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	4	0	4	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	2	0	2	0	y	0.33	2	4	2	4	y	0.33	2	4	2	4	y	0.00	0	6	0	6	n	-	-	-	-	-	-	ENSMUSG00000021794.17	Glud1	chr14	protein_coding	glutamate dehydrogenase 1
novel_NIR_5771	chr14	34061975	34063610	+	34061975	34063763	A3SS	ENSMUST00000161593.2	novel	0.33	2	4	2	4	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.33	2	4	2	4	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	-	-	-	-	-	-	ENSMUSG00000021794.17	Glud1	chr14	protein_coding	glutamate dehydrogenase 1
novel_NIR_5772	chr14	34182572	34224352	-	34182569	34224352	A3SS	ENSMUST00000049005.15	novel	0.58	7	5	7	5	y	0.00	0	7	0	7	n	0.35	7	13	7	13	y	0.00	0	4	0	4	n	0.45	9	11	9	11	y	0.20	4	16	4	16	y	0.00	0	7	0	7	n	0.45	5	6	5	6	y	0.25	3	9	3	9	y	0.27	4	11	4	11	y	0.75	6	2	6	2	y	0.57	8	6	8	6	y	ENSMUSG00000021796.16	Bmpr1a	chr14	protein_coding	bone morphogenetic protein receptor, type 1A
novel_NIR_5773	chr14	34182572	34224352	-	34208298	34224352	A3SS&ES	ENSMUST00000171551.2	novel	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	9	0	9	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	6	0	6	0	y	1.00	8	0	8	0	y	ENSMUSG00000021796.16	Bmpr1a	chr14	protein_coding	bone morphogenetic protein receptor, type 1A
novel_NIR_5774	chr14	34485534	34486912	+	34485534	34486649	A3SS	ENSMUST00000180412.3	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.56	5	4	5	4	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.20	1	4	1	4	n	ENSMUSG00000097310.3	A930038B10Rik	chr14	lncRNA	RIKEN cDNA A930038B10 gene
novel_NIR_5775	chr14	35242841	35244307	+	35242841	35284452	A3SS	ENSMUST00000043349.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	ENSMUSG00000041078.8	Grid1	chr14	protein_coding	glutamate receptor, ionotropic, delta 1
novel_NIR_5776	chr14	3581430	3742291	+	3581430	3839265	A3SS	ENSMUST00000176843.8	novel	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.17	2	10	2	10	y	0.00	0	4	0	4	n	0.17	1	5	1	5	n	ENSMUSG00000058317.13	Ube2e2	chr14	protein_coding	ubiquitin-conjugating enzyme E2E 2
novel_NIR_5777	chr14	3598202	3671694	+	3598202	3651110	A3SS&ES	ENSMUST00000177259.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000058317.13	Ube2e2	chr14	protein_coding	ubiquitin-conjugating enzyme E2E 2
novel_NIR_5778	chr14	3598202	3671694	+	3598202	3742291	A3SS	ENSMUST00000176062.3	novel	0.33	2	4	2	4	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000058317.13	Ube2e2	chr14	protein_coding	ubiquitin-conjugating enzyme E2E 2
novel_NIR_5779	chr14	3598202	3671694	+	3598202	3833416	A3SS	ENSMUST00000177398.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000058317.13	Ube2e2	chr14	protein_coding	ubiquitin-conjugating enzyme E2E 2
novel_NIR_5780	chr14	3598202	3671694	+	3598202	3882698	A3SS	ENSMUST00000176555.8	novel	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000058317.13	Ube2e2	chr14	protein_coding	ubiquitin-conjugating enzyme E2E 2
novel_NIR_5781	chr14	3598202	3739876	+	3598202	3651110	A3SS&ES	ENSMUST00000177259.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000058317.13	Ube2e2	chr14	protein_coding	ubiquitin-conjugating enzyme E2E 2
novel_NIR_5782	chr14	3598202	3739876	+	3598202	3742291	A3SS	ENSMUST00000176062.3	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000058317.13	Ube2e2	chr14	protein_coding	ubiquitin-conjugating enzyme E2E 2
novel_NIR_5783	chr14	3598202	3739876	+	3598202	3833416	A3SS	ENSMUST00000177398.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000058317.13	Ube2e2	chr14	protein_coding	ubiquitin-conjugating enzyme E2E 2
novel_NIR_5784	chr14	3598202	3739876	+	3598202	3882698	A3SS	ENSMUST00000176555.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.60	3	2	3	2	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000058317.13	Ube2e2	chr14	protein_coding	ubiquitin-conjugating enzyme E2E 2
novel_NIR_5785	chr14	36640517	36648796	-	36640553	36648796	A3SS	ENSMUST00000067700.13	novel	0.00	0	20	0	20	n	0.00	0	21	0	21	n	0.15	6	35	6	35	y	0.00	0	19	0	19	n	0.06	2	30	2	30	n	0.00	0	23	0	23	n	0.00	0	26	0	26	n	0.00	0	23	0	23	n	0.00	0	12	0	12	n	0.00	0	25	0	25	n	0.00	0	21	0	21	n	0.00	0	20	0	20	n	ENSMUSG00000058690.15	Ccser2	chr14	protein_coding	coiled-coil serine rich 2
novel_NIR_5786	chr14	36769689	36779191	+	36777003	36779191	5pMXE	ENSMUST00000120052.2	novel	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	0.88	7	1	7	1	y	1.00	10	0	10	0	y	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	14	0	14	0	y	1.00	12	0	12	0	y	1.00	7	0	7	0	y	1.00	13	0	13	0	y	ENSMUSG00000041044.10	Lrit1	chr14	protein_coding	leucine-rich repeat, immunoglobulin-like and transmembrane domains 1
novel_NIR_5787	chr14	36855760	36857167	-	36855760	36856744	A5SS	ENSMUST00000224769.2	novel	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.50	2	2	2	2	y	ENSMUSG00000041028.17	Ghitm	chr14	protein_coding	growth hormone inducible transmembrane protein
novel_NIR_5788	chr14	3839397	3866153	+	3839397	3872293	A3SS	ENSMUST00000176931.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000058317.13	Ube2e2	chr14	protein_coding	ubiquitin-conjugating enzyme E2E 2
novel_NIR_5789	chr14	40582696	40593138	-	40582696	40594487	A5SS	ENSMUST00000096000.4	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.25	2	6	2	6	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037833.15	Sh2d4b	chr14	protein_coding	SH2 domain containing 4B
novel_NIR_5790	chr14	40596196	40607529	-	40596196	40614739	A5SS	ENSMUST00000096000.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.25	2	6	2	6	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037833.15	Sh2d4b	chr14	protein_coding	SH2 domain containing 4B
novel_NIR_5791	chr14	40614292	40614739	-	40596196	40614739	A3SS	ENSMUST00000096000.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.25	2	6	2	6	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037833.15	Sh2d4b	chr14	protein_coding	SH2 domain containing 4B
novel_NIR_5792	chr14	40726160	40727077	-	40726160	40726846	5pMXE	ENSMUST00000130166.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021792.16	Prxl2a	chr14	protein_coding	peroxiredoxin like 2A
novel_NIR_5793	chr14	40726160	40727077	-	40726160	40727598	A5SS	ENSMUST00000152837.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000021792.16	Prxl2a	chr14	protein_coding	peroxiredoxin like 2A
novel_NIR_5794	chr14	40726160	40727077	-	40726160	40728755	A5SS	ENSMUST00000134715.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021792.16	Prxl2a	chr14	protein_coding	peroxiredoxin like 2A
novel_NIR_5795	chr14	40726160	40727077	-	40726160	40730156	A5SS	ENSMUST00000136661.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000021792.16	Prxl2a	chr14	protein_coding	peroxiredoxin like 2A
novel_NIR_5796	chr14	40726160	40727077	-	40726160	40735583	A5SS	ENSMUST00000143143.8	novel	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.27	3	8	3	8	y	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	ENSMUSG00000021792.16	Prxl2a	chr14	protein_coding	peroxiredoxin like 2A
novel_NIR_5797	chr14	40726160	40730662	-	40726160	40726846	5pMXE	ENSMUST00000130166.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	ENSMUSG00000021792.16	Prxl2a	chr14	protein_coding	peroxiredoxin like 2A
novel_NIR_5798	chr14	40726160	40730662	-	40726160	40728755	5pMXE	ENSMUST00000134715.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	ENSMUSG00000021792.16	Prxl2a	chr14	protein_coding	peroxiredoxin like 2A
novel_NIR_5799	chr14	40726160	40730662	-	40726160	40730156	5pMXE	ENSMUST00000136661.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.75	3	1	3	1	y	ENSMUSG00000021792.16	Prxl2a	chr14	protein_coding	peroxiredoxin like 2A
novel_NIR_5800	chr14	40726160	40730662	-	40726160	40735583	A5SS	ENSMUST00000143143.8	novel	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.10	1	9	1	9	n	0.20	1	4	1	4	n	0.14	2	12	2	12	n	0.00	0	7	0	7	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.22	2	7	2	7	y	0.18	3	14	3	14	y	ENSMUSG00000021792.16	Prxl2a	chr14	protein_coding	peroxiredoxin like 2A
novel_NIR_5801	chr14	40727678	40730662	-	40727678	40728755	5pMXE	ENSMUST00000152837.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021792.16	Prxl2a	chr14	protein_coding	peroxiredoxin like 2A
novel_NIR_5802	chr14	40827217	40827408	+	40827217	40827304	A3SS	ENSMUST00000225720.2	novel	0.15	98	553	98	553	y	0.13	56	381	56	381	n	0.23	189	626	189	626	y	0.15	141	819	141	819	y	0.14	185	1135	185	1135	n	0.19	115	485	115	485	y	0.10	87	813	87	813	n	0.19	119	511	119	511	y	0.09	57	554	57	554	n	0.10	116	1099	116	1099	n	0.13	79	549	79	549	n	0.13	155	1047	155	1047	n	ENSMUSG00000037798.8	Mat1a	chr14	protein_coding	methionine adenosyltransferase I, alpha
novel_NIR_5803	chr14	40827217	40827408	+	40827217	40827469	A3SS	ENSMUST00000224514.2	novel	0.34	98	187	98	187	y	0.25	56	172	56	172	y	0.42	189	256	189	256	y	0.32	141	306	141	306	y	0.34	185	352	185	352	y	0.37	115	196	115	196	y	0.25	87	268	87	268	y	0.34	119	226	119	226	y	0.24	57	182	57	182	y	0.28	116	303	116	303	y	0.32	79	171	79	171	y	0.30	155	355	155	355	y	ENSMUSG00000037798.8	Mat1a	chr14	protein_coding	methionine adenosyltransferase I, alpha
novel_NIR_5804	chr14	40851179	40854173	+	40853789	40854173	5pMXE	ENSMUST00000170719.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021789.15	Sftpa1	chr14	protein_coding	surfactant associated protein A1
novel_NIR_5805	chr14	40852219	40854173	+	40853789	40854173	5pMXE	ENSMUST00000170719.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021789.15	Sftpa1	chr14	protein_coding	surfactant associated protein A1
novel_NIR_5806	chr14	40874029	40876458	+	40875708	40876458	A5SS&ES	ENSMUST00000047095.4	novel	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.38	5	8	5	8	y	0.00	0	13	0	13	n	-	-	-	-	-	-	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.14	2	12	2	12	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	12	0	12	n	ENSMUSG00000037780.4	Mbl1	chr14	protein_coding	mannose-binding lectin (protein A) 1
novel_NIR_5807	chr14	40874912	40876458	+	40875708	40876458	A5SS&ES	ENSMUST00000047095.4	novel	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.27	6	16	6	16	y	0.00	0	8	0	8	n	0.00	0	13	0	13	n	-	-	-	-	-	-	0.00	0	11	0	11	n	0.10	1	9	1	9	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	1.00	3	0	3	0	y	0.14	2	12	2	12	n	ENSMUSG00000037780.4	Mbl1	chr14	protein_coding	mannose-binding lectin (protein A) 1
novel_NIR_5808	chr14	40875586	40876458	+	40875708	40876458	A5SS	ENSMUST00000047095.4	novel	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	-	-	-	-	-	-	0.00	0	11	0	11	n	0.25	3	9	3	9	y	0.00	0	12	0	12	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	12	0	12	n	ENSMUSG00000037780.4	Mbl1	chr14	protein_coding	mannose-binding lectin (protein A) 1
novel_NIR_5809	chr14	40894669	40897585	-	40894669;40896517	40896434;40897585	ES	ENSMUST00000077136.5	novel	0.00	0	1.0	0	2;0	n	-	-	-	-	-	-	0.18	1	4.5	1	8;1	n	0.00	0	0.5	0	1;0	n	0.00	0	3.0	0	4;2	n	0.00	0	1.0	0	2;0	n	0.00	0	4.0	0	5;3	n	0.50	2	2.0	2	4;0	y	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	0.00	0	1.0	0	0;2	n	0.00	0	0.5	0	1;0	n	ENSMUSG00000021795.11	Sftpd	chr14	protein_coding	surfactant associated protein D
novel_NIR_5810	chr14	4191226	4192890	-	4191852	4192890	A3SS&ES	ENSMUST00000022294.15	novel	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.12	1	7	1	7	n	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.21	3	11	3	11	y	0.00	0	9	0	9	n	0.18	2	9	2	9	y	ENSMUSG00000021772.16	Nkiras1	chr14	protein_coding	NFKB inhibitor interacting Ras-like protein 1
novel_NIR_5811	chr14	4191392	4191759	-	4191392	4192131	A5SS	ENSMUST00000150209.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021772.16	Nkiras1	chr14	protein_coding	NFKB inhibitor interacting Ras-like protein 1
novel_NIR_5812	chr14	4191392	4191759	-	4191392	4192728	A5SS	ENSMUST00000133460.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000021772.16	Nkiras1	chr14	protein_coding	NFKB inhibitor interacting Ras-like protein 1
novel_NIR_5813	chr14	4191852	4191950	-	4191852	4192728	A5SS	ENSMUST00000156186.2	novel	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.20	4	16	4	16	y	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.08	1	12	1	12	n	0.00	0	2	0	2	n	0.22	2	7	2	7	y	0.00	0	15	0	15	n	0.12	1	7	1	7	n	0.00	0	5	0	5	n	ENSMUSG00000021772.16	Nkiras1	chr14	protein_coding	NFKB inhibitor interacting Ras-like protein 1
novel_NIR_5814	chr14	4191852	4191950	-	4191852	4192890	A5SS	ENSMUST00000022294.15	novel	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.36	4	7	4	7	y	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.11	1	8	1	8	n	0.00	0	9	0	9	n	0.22	2	7	2	7	y	0.00	0	11	0	11	n	0.10	1	9	1	9	n	0.00	0	9	0	9	n	ENSMUSG00000021772.16	Nkiras1	chr14	protein_coding	NFKB inhibitor interacting Ras-like protein 1
novel_NIR_5815	chr14	4192859	4192966	-	4192870	4192966	A3SS	ENSMUST00000156186.2	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.33	3	6	3	6	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	ENSMUSG00000021772.16	Nkiras1	chr14	protein_coding	NFKB inhibitor interacting Ras-like protein 1
novel_NIR_5816	chr14	4506635	4541742	-	4506635	4506793	5pMXE	ENSMUST00000224934.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	ENSMUSG00000021779.20	Thrb	chr14	protein_coding	thyroid hormone receptor beta
novel_NIR_5817	chr14	4506635	4642728	-	4506635	4506793	5pMXE	ENSMUST00000224934.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000021779.20	Thrb	chr14	protein_coding	thyroid hormone receptor beta
novel_NIR_5818	chr14	4506635	4642728	-	4506635	4544037	A5SS&ES	ENSMUST00000022303.17	novel	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.17	2	10	2	10	y	0.00	0	30	0	30	n	0.04	1	27	1	27	n	0.00	0	21	0	21	n	0.00	0	17	0	17	n	0.00	0	19	0	19	n	0.00	0	10	0	10	n	0.07	2	25	2	25	n	0.07	1	13	1	13	n	0.00	0	23	0	23	n	ENSMUSG00000021779.20	Thrb	chr14	protein_coding	thyroid hormone receptor beta
novel_NIR_5819	chr14	4506635	4642728	-	4506635;4544100	4544037;4642728	ES	ENSMUST00000091471.12	novel	0.00	0	11.5	0	14;9	n	0.00	0	5.0	0	9;1	n	0.17	2	10.0	2	10;10	y	0.00	0	20.5	0	30;11	n	0.04	1	24.5	1	27;22	n	0.00	0	13.5	0	21;6	n	0.00	0	12.0	0	17;7	n	0.00	0	11.5	0	19;4	n	0.00	0	7.5	0	10;5	n	0.11	2	17.0	2	25;9	n	0.08	1	12.0	1	13;11	n	0.00	0	17.0	0	23;11	n	ENSMUSG00000021779.20	Thrb	chr14	protein_coding	thyroid hormone receptor beta
novel_NIR_5820	chr14	45379522	45382399	-	45379590	45382399	A3SS	ENSMUST00000139526.9	novel	0.00	0	4	0	4	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	10	0	10	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.17	3	15	3	15	y	ENSMUSG00000021830.15	Txndc16	chr14	protein_coding	thioredoxin domain containing 16
novel_NIR_5821	chr14	45379590	45385286	-	45379590;45382537	45382399;45385286	ES	ENSMUST00000139526.9	novel	0.00	0	5.0	0	4;6	n	0.00	0	5.0	0	5;5	n	0.00	0	1.5	0	0;3	n	0.00	0	5.5	0	10;1	n	0.44	2	2.5	2	3;2	y	0.00	0	0.5	0	0;1	n	0.14	1	6.0	1	3;9	n	0.00	0	3.5	0	5;2	n	0.00	0	5.0	0	5;5	n	0.00	0	6.0	0	8;4	n	0.00	0	2.5	0	3;2	n	0.00	0	11.5	0	15;8	n	ENSMUSG00000021830.15	Txndc16	chr14	protein_coding	thioredoxin domain containing 16
novel_NIR_5822	chr14	4544100	4547297	-	4544100	4642721	A5SS	ENSMUST00000022303.17	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.25	2	6	2	6	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.33	2	4	2	4	y	0.17	2	10	2	10	y	0.00	0	4	0	4	n	0.39	7	11	7	11	y	0.00	0	6	0	6	n	0.00	0	5	0	5	n	ENSMUSG00000021779.20	Thrb	chr14	protein_coding	thyroid hormone receptor beta
novel_NIR_5823	chr14	4544100	4547297	-	4544100	4642728	A5SS	ENSMUST00000091471.12	novel	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.15	2	11	2	11	n	0.00	0	22	0	22	n	0.00	0	6	0	6	n	0.22	2	7	2	7	n	0.33	2	4	2	4	y	0.00	0	5	0	5	n	0.44	7	9	7	9	y	0.00	0	11	0	11	n	0.00	0	11	0	11	n	ENSMUSG00000021779.20	Thrb	chr14	protein_coding	thyroid hormone receptor beta
novel_NIR_5824	chr14	4544100	4642764	-	4544100	4642721	A5SS	ENSMUST00000022303.17	novel	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.14	1	6	1	6	n	0.07	1	13	1	13	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.20	1	4	1	4	n	0.15	2	11	2	11	y	0.14	1	6	1	6	n	0.00	0	5	0	5	n	ENSMUSG00000021779.20	Thrb	chr14	protein_coding	thyroid hormone receptor beta
novel_NIR_5825	chr14	4544100	4642764	-	4544100	4642728	A5SS	ENSMUST00000091471.12	novel	0.10	1	9	1	9	n	0.00	0	1	0	1	n	0.09	1	10	1	10	n	0.08	1	11	1	11	n	0.04	1	22	1	22	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.18	2	9	2	9	y	0.08	1	11	1	11	n	0.00	0	11	0	11	n	ENSMUSG00000021779.20	Thrb	chr14	protein_coding	thyroid hormone receptor beta
novel_NIR_5826	chr14	4544100;4547414	4547297;4642728	-	4544100	4642728	cassetteExon	ENSMUST00000091471.12	novel	0.00	0.0	9	0;0	9	n	0.00	0.0	1	0;0	1	n	0.09	1.0	10	0;2	10	n	0.12	1.5	11	2;1	11	n	0.00	0.0	22	0;0	22	n	0.00	0.0	6	0;0	6	n	0.22	2.0	7	2;2	7	y	0.20	1.0	4	2;0	4	n	0.09	0.5	5	0;1	5	n	0.28	3.5	9	7;0	9	n	0.04	0.5	11	0;1	11	n	0.00	0.0	11	0;0	11	n	ENSMUSG00000021779.20	Thrb	chr14	protein_coding	thyroid hormone receptor beta
novel_NIR_5827	chr14	4547414	4642728	-	4544100	4642728	A3SS	ENSMUST00000091471.12	novel	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.17	2	10	2	10	y	0.08	1	11	1	11	n	0.00	0	22	0	22	n	0.00	0	6	0	6	n	0.22	2	7	2	7	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.00	0	9	0	9	n	0.08	1	11	1	11	n	0.00	0	11	0	11	n	ENSMUSG00000021779.20	Thrb	chr14	protein_coding	thyroid hormone receptor beta
novel_NIR_5828	chr14	45622205	45625264	-	45622205	45625730	A5SS	ENSMUST00000226590.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.75	3	1	3	1	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000037722.9	Gnpnat1	chr14	protein_coding	glucosamine-phosphate N-acetyltransferase 1
novel_NIR_5829	chr14	45622205	45625264	-	45622205	45625905	A5SS	ENSMUST00000227865.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.50	2	2	2	2	y	0.60	3	2	3	2	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.67	4	2	4	2	y	ENSMUSG00000037722.9	Gnpnat1	chr14	protein_coding	glucosamine-phosphate N-acetyltransferase 1
novel_NIR_5830	chr14	45622205	45625264	-	45622205	45625919	A5SS	ENSMUST00000226856.2	novel	0.12	1	7	1	7	n	0.05	1	18	1	18	n	0.13	2	13	2	13	n	0.20	3	12	3	12	y	0.14	2	12	2	12	n	0.12	1	7	1	7	n	0.00	0	17	0	17	n	0.00	0	8	0	8	n	0.14	1	6	1	6	n	0.11	2	16	2	16	n	0.00	0	9	0	9	n	0.29	4	10	4	10	y	ENSMUSG00000037722.9	Gnpnat1	chr14	protein_coding	glucosamine-phosphate N-acetyltransferase 1
novel_NIR_5831	chr14	45622205	45625264	-	45622205	45626508	A5SS	ENSMUST00000228003.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000037722.9	Gnpnat1	chr14	protein_coding	glucosamine-phosphate N-acetyltransferase 1
novel_NIR_5832	chr14	45622205	45625264	-	45622205	45626521	A5SS	ENSMUST00000228304.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000037722.9	Gnpnat1	chr14	protein_coding	glucosamine-phosphate N-acetyltransferase 1
novel_NIR_5833	chr14	45622205	45626210	-	45622205	45625730	5pMXE	ENSMUST00000226590.2	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.50	1	1	1	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000037722.9	Gnpnat1	chr14	protein_coding	glucosamine-phosphate N-acetyltransferase 1
novel_NIR_5834	chr14	45622205	45626210	-	45622205	45625905	A5SS	ENSMUST00000227865.2	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.50	2	2	2	2	y	0.33	1	2	1	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	1	2	1	2	n	ENSMUSG00000037722.9	Gnpnat1	chr14	protein_coding	glucosamine-phosphate N-acetyltransferase 1
novel_NIR_5835	chr14	45622205	45626210	-	45622205	45625919	A5SS	ENSMUST00000226856.2	novel	0.30	3	7	3	7	y	0.05	1	18	1	18	n	0.13	2	13	2	13	n	0.08	1	12	1	12	n	0.08	1	12	1	12	n	0.00	0	7	0	7	n	0.00	0	17	0	17	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.09	1	10	1	10	n	ENSMUSG00000037722.9	Gnpnat1	chr14	protein_coding	glucosamine-phosphate N-acetyltransferase 1
novel_NIR_5836	chr14	45622205	45626210	-	45622205	45626508	A5SS	ENSMUST00000228003.2	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000037722.9	Gnpnat1	chr14	protein_coding	glucosamine-phosphate N-acetyltransferase 1
novel_NIR_5837	chr14	45622205	45626210	-	45622205	45626521	A5SS	ENSMUST00000228304.2	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000037722.9	Gnpnat1	chr14	protein_coding	glucosamine-phosphate N-acetyltransferase 1
novel_NIR_5838	chr14	45713591	45719889	-	45713907	45719889	A3SS&ES	ENSMUST00000150660.3	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.67	2	1	2	1	y	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.00	0	22	0	22	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000037712.18	Fermt2	chr14	protein_coding	fermitin family member 2
novel_NIR_5839	chr14	45713907	45715097	-	45713570	45715097	A3SS	ENSMUST00000141424.2	novel	0.09	4	41	4	41	n	0.11	4	33	4	33	n	0.05	2	38	2	38	n	0.14	15	91	15	91	n	0.09	15	154	15	154	n	0.06	2	31	2	31	n	0.10	8	70	8	70	n	0.19	12	52	12	52	y	0.03	2	74	2	74	n	0.14	13	82	13	82	n	0.11	6	51	6	51	n	0.08	5	58	5	58	n	ENSMUSG00000037712.18	Fermt2	chr14	protein_coding	fermitin family member 2
novel_NIR_5840	chr14	45713907	45715097	-	45713907	45719889	A5SS	ENSMUST00000150660.3	novel	0.44	4	5	4	5	y	0.67	4	2	4	2	y	0.29	2	5	2	5	y	0.94	15	1	15	1	y	0.58	15	11	15	11	y	0.50	2	2	2	2	y	0.27	8	22	8	22	y	1.00	12	0	12	0	y	0.50	2	2	2	2	y	0.93	13	1	13	1	y	1.00	6	0	6	0	y	0.62	5	3	5	3	y	ENSMUSG00000037712.18	Fermt2	chr14	protein_coding	fermitin family member 2
novel_NIR_5841	chr14	45742187	45744349	-	45742187	45756353	A5SS	ENSMUST00000228208.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037712.18	Fermt2	chr14	protein_coding	fermitin family member 2
novel_NIR_5842	chr14	45742187	45766593	-	45742187	45756353	5pMXE	ENSMUST00000228208.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037712.18	Fermt2	chr14	protein_coding	fermitin family member 2
novel_NIR_5843	chr14	45768013	45770630	+	45767988	45770630	A5SS	ENSMUST00000228591.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000115324.2	4930527F14Rik	chr14	lncRNA	RIKEN cDNA 4930527F14 gene
novel_NIR_5844	chr14	45779320	45781094	-	45779320	45780240	5pMXE	ENSMUST00000228455.2	novel	0.00	0	5	0	5	n	0.80	12	3	12	3	y	0.11	1	8	1	8	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.44	7	9	7	9	y	0.43	3	4	3	4	y	0.00	0	3	0	3	n	0.33	5	10	5	10	y	0.00	0	2	0	2	n	0.67	2	1	2	1	y	ENSMUSG00000115846.2	Gm41144	chr14	lncRNA	predicted gene, 41144
novel_NIR_5845	chr14	45789675	45823277	+	45803126	45823277	5pMXE	ENSMUST00000228948.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000115553.2	Gm49124	chr14	lncRNA	predicted gene, 49124
novel_NIR_5846	chr14	45789675	45826150	+	45801580	45826150	5pMXE	ENSMUST00000226558.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000085913.3	Gm15601	chr14	lncRNA	predicted gene 15601
novel_NIR_5847	chr14	45789675	45826150	+	45825663	45826150	5pMXE	ENSMUST00000122972.2	novel	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000085913.3	Gm15601	chr14	lncRNA	predicted gene 15601
novel_NIR_5848	chr14	45789704	45789949	-	45789704	45791235	A5SS	ENSMUST00000228939.2	novel	0.00	0	1	0	1	n	0.33	2	4	2	4	y	0.05	2	39	2	39	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	17	0	17	n	0.00	0	5	0	5	n	0.41	7	10	7	10	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000115391.2	Gm49123	chr14	lncRNA	predicted gene, 49123
novel_NIR_5849	chr14	45789704	45791287	-	45789704	45791235	A5SS	ENSMUST00000228939.2	novel	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.05	2	39	2	39	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.06	1	17	1	17	n	0.00	0	5	0	5	n	0.23	3	10	3	10	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000115391.2	Gm49123	chr14	lncRNA	predicted gene, 49123
novel_NIR_5850	chr14	45799172	45809079	+	45799172	45800216	3pMXE	ENSMUST00000226815.2	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000115324.2	4930527F14Rik	chr14	lncRNA	RIKEN cDNA 4930527F14 gene
novel_NIR_5851	chr14	45826270;45828189	45828085;45832525	+	45826270	45832525	cassetteExon	ENSMUST00000226558.2	novel	-	-	-	-	-	-	1.00	3.0	0	0;6	0	n	1.00	0.5	0	1;0	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	0.5	0	0;1	0	n	1.00	1.0	0	0;2	0	n	1.00	2.0	0	2;2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000085913.3	Gm15601	chr14	lncRNA	predicted gene 15601
novel_NIR_5852	chr14	45828189	45832525	+	45826270	45832525	A5SS	ENSMUST00000226558.2	novel	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000085913.3	Gm15601	chr14	lncRNA	predicted gene 15601
novel_NIR_5853	chr14	4642802	4656154	-	4642802	4808672	A5SS	ENSMUST00000022303.17	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	ENSMUSG00000021779.20	Thrb	chr14	protein_coding	thyroid hormone receptor beta
novel_NIR_5854	chr14	4642802	4656154	-	4642802	4809062	A5SS	ENSMUST00000224597.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021779.20	Thrb	chr14	protein_coding	thyroid hormone receptor beta
novel_NIR_5855	chr14	4642802	4656154	-	4642802	4809265	A5SS	ENSMUST00000224470.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021779.20	Thrb	chr14	protein_coding	thyroid hormone receptor beta
novel_NIR_5856	chr14	4642802	4684986	-	4642802	4808672	A5SS	ENSMUST00000022303.17	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.21	3	11	3	11	y	0.00	0	9	0	9	n	0.00	0	5	0	5	n	ENSMUSG00000021779.20	Thrb	chr14	protein_coding	thyroid hormone receptor beta
novel_NIR_5857	chr14	4642802	4684986	-	4642802	4809062	A5SS	ENSMUST00000224597.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021779.20	Thrb	chr14	protein_coding	thyroid hormone receptor beta
novel_NIR_5858	chr14	4642802	4684986	-	4642802	4809265	A5SS	ENSMUST00000224470.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021779.20	Thrb	chr14	protein_coding	thyroid hormone receptor beta
novel_NIR_5859	chr14	4642802	4708116	-	4642802	4808672	A5SS	ENSMUST00000022303.17	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.18	2	9	2	9	y	0.00	0	5	0	5	n	ENSMUSG00000021779.20	Thrb	chr14	protein_coding	thyroid hormone receptor beta
novel_NIR_5860	chr14	4642802	4708116	-	4642802	4809062	A5SS	ENSMUST00000224597.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000021779.20	Thrb	chr14	protein_coding	thyroid hormone receptor beta
novel_NIR_5861	chr14	4642802	4708116	-	4642802	4809265	A5SS	ENSMUST00000224470.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000021779.20	Thrb	chr14	protein_coding	thyroid hormone receptor beta
novel_NIR_5862	chr14	4642802	4733766	-	4642802	4808672	A5SS	ENSMUST00000022303.17	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	ENSMUSG00000021779.20	Thrb	chr14	protein_coding	thyroid hormone receptor beta
novel_NIR_5863	chr14	4642802	4733766	-	4642802	4809062	A5SS	ENSMUST00000224597.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021779.20	Thrb	chr14	protein_coding	thyroid hormone receptor beta
novel_NIR_5864	chr14	4642802	4733766	-	4642802	4809265	A5SS	ENSMUST00000224470.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021779.20	Thrb	chr14	protein_coding	thyroid hormone receptor beta
novel_NIR_5865	chr14	4642802	4756106	-	4642802	4808672	A5SS	ENSMUST00000022303.17	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.17	2	10	2	10	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	ENSMUSG00000021779.20	Thrb	chr14	protein_coding	thyroid hormone receptor beta
novel_NIR_5866	chr14	4642802	4756106	-	4642802	4809062	A5SS	ENSMUST00000224597.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021779.20	Thrb	chr14	protein_coding	thyroid hormone receptor beta
novel_NIR_5867	chr14	4642802	4756106	-	4642802	4809265	A5SS	ENSMUST00000224470.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021779.20	Thrb	chr14	protein_coding	thyroid hormone receptor beta
novel_NIR_5868	chr14	4642802	4809852	-	4642802	4808672	5pMXE	ENSMUST00000022303.17	novel	0.00	0	1	0	1	n	0.86	6	1	6	1	y	0.83	15	3	15	3	y	0.67	14	7	14	7	y	0.33	5	10	5	10	y	1.00	4	0	4	0	y	0.71	5	2	5	2	y	1.00	6	0	6	0	y	0.57	4	3	4	3	y	0.42	8	11	8	11	y	0.53	10	9	10	9	y	0.58	7	5	7	5	y	ENSMUSG00000021779.20	Thrb	chr14	protein_coding	thyroid hormone receptor beta
novel_NIR_5869	chr14	4642802	4809852	-	4642802	4809062	5pMXE	ENSMUST00000224597.2	novel	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	15	0	15	0	y	1.00	14	0	14	0	y	1.00	5	0	5	0	y	1.00	4	0	4	0	y	1.00	5	0	5	0	y	1.00	6	0	6	0	y	1.00	4	0	4	0	y	1.00	8	0	8	0	y	1.00	10	0	10	0	y	1.00	7	0	7	0	y	ENSMUSG00000021779.20	Thrb	chr14	protein_coding	thyroid hormone receptor beta
novel_NIR_5870	chr14	4642802	4809852	-	4642802	4809265	5pMXE	ENSMUST00000224470.2	novel	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	15	0	15	0	y	1.00	14	0	14	0	y	1.00	5	0	5	0	y	1.00	4	0	4	0	y	1.00	5	0	5	0	y	1.00	6	0	6	0	y	1.00	4	0	4	0	y	1.00	8	0	8	0	y	1.00	10	0	10	0	y	1.00	7	0	7	0	y	ENSMUSG00000021779.20	Thrb	chr14	protein_coding	thyroid hormone receptor beta
novel_NIR_5871	chr14	4642802	4810241	-	4642802	4808672	5pMXE	ENSMUST00000022303.17	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.09	1	10	1	10	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	ENSMUSG00000021779.20	Thrb	chr14	protein_coding	thyroid hormone receptor beta
novel_NIR_5872	chr14	4642802	4810241	-	4642802	4809062	5pMXE	ENSMUST00000224597.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021779.20	Thrb	chr14	protein_coding	thyroid hormone receptor beta
novel_NIR_5873	chr14	4642802	4810241	-	4642802	4809265	5pMXE	ENSMUST00000224470.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021779.20	Thrb	chr14	protein_coding	thyroid hormone receptor beta
novel_NIR_5874	chr14	46623498	46624613	-	46623551	46624613	A3SS	ENSMUST00000074077.12	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.67	4	2	4	2	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	ENSMUSG00000021835.16	Bmp4	chr14	protein_coding	bone morphogenetic protein 4
novel_NIR_5875	chr14	46623551	46624617	-	46623551	46624613	A5SS	ENSMUST00000074077.12	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.29	2	5	2	5	y	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	ENSMUSG00000021835.16	Bmp4	chr14	protein_coding	bone morphogenetic protein 4
novel_NIR_5876	chr14	46623551	46624617	-	46623551	46627761	A5SS	ENSMUST00000100676.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021835.16	Bmp4	chr14	protein_coding	bone morphogenetic protein 4
novel_NIR_5877	chr14	46821685	46835700	-	46766297	46835700	A3SS	ENSMUST00000228533.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000115781.2	Gm49319	chr14	lncRNA	predicted gene, 49319
novel_NIR_5878	chr14	46821685	46835700	-	46808706	46835700	A3SS	ENSMUST00000226162.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	2	4	2	4	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000085123.3	Rubie	chr14	lncRNA	RNA upstream of Bmp4 expressed in inner ear
novel_NIR_5879	chr14	46835824	46851976	-	46835824	46848086	5pMXE	ENSMUST00000228533.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000115781.2	Gm49319	chr14	lncRNA	predicted gene, 49319
novel_NIR_5880	chr14	46835824	46851976	-	46835824	46863703	A5SS	ENSMUST00000228663.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000115781.2	Gm49319	chr14	lncRNA	predicted gene, 49319
novel_NIR_5881	chr14	46841774	46850861	-	46841774	46842644	A5SS&ES	ENSMUST00000226569.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000115665.2	4933425B07Rik	chr14	lncRNA	RIKEN cDNA 4933425B07 gene
novel_NIR_5882	chr14	47052445	47053055	-	47052443	47053055	A3SS	ENSMUST00000079314.12	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	8	0	8	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	6	0	6	0	y	ENSMUSG00000062014.14	Gmfb	chr14	protein_coding	glia maturation factor, beta
novel_NIR_5883	chr14	47052446	47053055	-	47052443	47053055	A3SS	ENSMUST00000079314.12	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000062014.14	Gmfb	chr14	protein_coding	glia maturation factor, beta
novel_NIR_5884	chr14	47054939	47058466	-	47054939	47055873	5pMXE	ENSMUST00000226333.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.40	2	3	2	3	y	0.67	2	1	2	1	y	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	ENSMUSG00000062014.14	Gmfb	chr14	protein_coding	glia maturation factor, beta
novel_NIR_5885	chr14	47054939	47058514	-	47054939	47055873	5pMXE	ENSMUST00000226333.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.33	2	4	2	4	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	ENSMUSG00000062014.14	Gmfb	chr14	protein_coding	glia maturation factor, beta
novel_NIR_5886	chr14	47056032	47058514	-	47056032	47056919	5pMXE	ENSMUST00000145958.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000062014.14	Gmfb	chr14	protein_coding	glia maturation factor, beta
novel_NIR_5887	chr14	47077753	47083334	+	47077753	47079878	A3SS&ES	ENSMUST00000226861.2	novel	1.00	6	0	6	0	y	1.00	13	0	13	0	y	1.00	9	0	9	0	y	1.00	7	0	7	0	y	1.00	6	0	6	0	y	1.00	5	0	5	0	y	1.00	15	0	15	0	y	1.00	3	0	3	0	y	1.00	7	0	7	0	y	1.00	5	0	5	0	y	1.00	10	0	10	0	y	1.00	11	0	11	0	y	ENSMUSG00000055128.16	Cgrrf1	chr14	protein_coding	cell growth regulator with ring finger domain 1
novel_NIR_5888	chr14	4708224	4808672	-	4642802	4808672	A3SS	ENSMUST00000022303.17	novel	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.17	2	10	2	10	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	ENSMUSG00000021779.20	Thrb	chr14	protein_coding	thyroid hormone receptor beta
novel_NIR_5889	chr14	47104612	47118090	-	47104612	47119197	A5SS	ENSMUST00000228370.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	-	-	-	-	-	-	ENSMUSG00000115100.2	Gm34934	chr14	lncRNA	predicted gene, 34934
novel_NIR_5890	chr14	47118308	47119197	-	47104612	47119197	A3SS	ENSMUST00000228370.2	novel	0.75	3	1	3	1	y	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	2	0	2	n	1.00	4	0	4	0	y	0.00	0	1	0	1	n	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.43	3	4	3	4	y	-	-	-	-	-	-	ENSMUSG00000115100.2	Gm34934	chr14	lncRNA	predicted gene, 34934
novel_NIR_5891	chr14	47118308	47119197	-	47118628	47119197	A3SS	ENSMUST00000228024.2	novel	1.00	3	0	3	0	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.40	4	6	4	6	y	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.43	3	4	3	4	y	0.00	0	3	0	3	n	ENSMUSG00000115100.2	Gm34934	chr14	lncRNA	predicted gene, 34934
novel_NIR_5892	chr14	47122473	47290307	+	47122473	47253734	A3SS&ES	ENSMUST00000228404.2	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000021838.18	Samd4	chr14	protein_coding	sterile alpha motif domain containing 4
novel_NIR_5893	chr14	47122473	47290307	+	47122473;47254252	47253734;47290307	ES	ENSMUST00000022386.15	novel	0.00	0	2.0	0	3;1	n	0.00	0	1.5	0	3;0	n	0.00	0	1.0	0	2;0	n	0.00	0	1.0	0	0;2	n	0.57	2	1.5	2	0;3	y	-	-	-	-	-	-	0.00	0	3.0	0	1;5	n	0.00	0	1.0	0	2;0	n	-	-	-	-	-	-	0.00	0	0.5	0	0;1	n	-	-	-	-	-	-	0.00	0	3.0	0	4;2	n	ENSMUSG00000021838.18	Samd4	chr14	protein_coding	sterile alpha motif domain containing 4
novel_NIR_5894	chr14	47904890	47907588	+	47904890	47907582	A3SS	ENSMUST00000187839.8	novel	0.07	1	14	1	14	n	0.11	1	8	1	8	n	0.13	2	13	2	13	n	0.00	0	9	0	9	n	0.09	1	10	1	10	n	0.00	0	3	0	3	n	0.05	1	20	1	20	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.18	2	9	2	9	y	0.00	0	7	0	7	n	0.00	0	15	0	15	n	ENSMUSG00000021843.18	Ktn1	chr14	protein_coding	kinectin 1
novel_NIR_5895	chr14	47928434	47930861	+	47928434;47929933	47929896;47930861	ES	ENSMUST00000187839.8	novel	0.13	2	13.0	2	15;11	n	0.62	4	2.5	4	2;3	y	0.14	3	18.0	3	23;13	n	0.29	5	12.0	5	12;12	y	0.33	8	16.0	8	18;14	y	0.18	1	4.5	1	4;5	n	0.08	2	24.5	2	27;22	n	0.13	2	13.5	2	16;11	n	0.30	4	9.5	4	11;8	y	0.19	3	12.5	3	15;10	y	0.00	0	8.0	0	7;9	n	0.16	4	21.5	4	21;22	y	ENSMUSG00000021843.18	Ktn1	chr14	protein_coding	kinectin 1
novel_NIR_5896	chr14	47971723	47973557	+	47971721	47973557	A5SS	ENSMUST00000187839.8	novel	0.00	0	6	0	6	n	0.50	2	2	2	2	y	0.00	0	10	0	10	n	0.27	3	8	3	8	y	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.00	0	15	0	15	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000021843.18	Ktn1	chr14	protein_coding	kinectin 1
novel_NIR_5897	chr14	47971723	47973557	+	47971723	47973559	A3SS	ENSMUST00000191018.7	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021843.18	Ktn1	chr14	protein_coding	kinectin 1
novel_NIR_5898	chr14	47971723	47973557	+	47971727	47973557	A5SS	ENSMUST00000190999.7	novel	-	-	-	-	-	-	0.22	2	7	2	7	y	0.00	0	6	0	6	n	0.60	3	2	3	2	y	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000021843.18	Ktn1	chr14	protein_coding	kinectin 1
novel_NIR_5899	chr14	48405783	48477675	+	48405783	48416598	3pMXE	ENSMUST00000226513.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021846.10	Peli2	chr14	protein_coding	pellino 2
novel_NIR_5900	chr14	48405783	48477675	+	48405783	48464795	3pMXE	ENSMUST00000228456.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021846.10	Peli2	chr14	protein_coding	pellino 2
novel_NIR_5901	chr14	48405783	48477675	+	48422804	48477675	5pMXE	ENSMUST00000228519.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021846.10	Peli2	chr14	protein_coding	pellino 2
novel_NIR_5902	chr14	48490222	48493449	+	48490222	48517475	A3SS	ENSMUST00000227362.2	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000021846.10	Peli2	chr14	protein_coding	pellino 2
novel_NIR_5903	chr14	48517560	48517916	+	48517560	48518880	A3SS	ENSMUST00000227362.2	novel	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.67	2	1	2	1	y	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.50	1	1	1	1	n	ENSMUSG00000021846.10	Peli2	chr14	protein_coding	pellino 2
novel_NIR_5904	chr14	48689514	48691019	+	48689514	48692538	A3SS	ENSMUST00000124720.8	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.25	1	3	1	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000036339.19	Tmem260	chr14	protein_coding	transmembrane protein 260
novel_NIR_5905	chr14	48689514	48691019	+	48689514	48711423	A3SS	ENSMUST00000153765.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036339.19	Tmem260	chr14	protein_coding	transmembrane protein 260
novel_NIR_5906	chr14	48689514	48697676	+	48689514	48692538	A3SS&ES	ENSMUST00000124720.8	novel	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000036339.19	Tmem260	chr14	protein_coding	transmembrane protein 260
novel_NIR_5907	chr14	48689514	48697676	+	48689514	48709781	A3SS	ENSMUST00000227440.2	novel	0.20	2	8	2	8	y	0.00	0	11	0	11	n	0.00	0	21	0	21	n	0.00	0	28	0	28	n	0.00	0	25	0	25	n	0.00	0	16	0	16	n	0.06	1	16	1	16	n	0.00	0	30	0	30	n	0.00	0	11	0	11	n	0.00	0	22	0	22	n	0.00	0	14	0	14	n	0.00	0	24	0	24	n	ENSMUSG00000036339.19	Tmem260	chr14	protein_coding	transmembrane protein 260
novel_NIR_5908	chr14	48689514	48697676	+	48689514	48711423	A3SS	ENSMUST00000153765.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036339.19	Tmem260	chr14	protein_coding	transmembrane protein 260
novel_NIR_5909	chr14	48746582	48746681	+	48746582	48757793	A3SS	ENSMUST00000227440.2	novel	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.88	7	1	7	1	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	ENSMUSG00000036339.19	Tmem260	chr14	protein_coding	transmembrane protein 260
novel_NIR_5910	chr14	48746582	48747776	+	48746582	48757793	A3SS	ENSMUST00000227440.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.50	3	3	3	3	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000036339.19	Tmem260	chr14	protein_coding	transmembrane protein 260
novel_NIR_5911	chr14	49256979	49258740	-	49256979	49260656	A5SS	ENSMUST00000162175.9	novel	0.06	2	31	2	31	n	0.00	0	21	0	21	n	0.02	1	58	1	58	n	0.00	0	27	0	27	n	0.02	1	48	1	48	n	0.05	1	20	1	20	n	0.03	1	37	1	37	n	0.04	1	26	1	26	n	0.00	0	35	0	35	n	0.00	0	29	0	29	n	0.16	6	31	6	31	y	0.00	0	27	0	27	n	ENSMUSG00000061244.15	Exoc5	chr14	protein_coding	exocyst complex component 5
novel_NIR_5912	chr14	49257024	49260656	-	49255017	49260656	A3SS	ENSMUST00000159651.2	novel	1.00	1	0	1	0	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000061244.15	Exoc5	chr14	protein_coding	exocyst complex component 5
novel_NIR_5913	chr14	49258881	49260656	-	49255017	49260656	A3SS	ENSMUST00000159651.2	novel	1.00	1	0	1	0	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061244.15	Exoc5	chr14	protein_coding	exocyst complex component 5
novel_NIR_5914	chr14	51054649	51054789	+	51054580	51054789	A5SS	ENSMUST00000036126.7	novel	0.00	0	11	0	11	n	0.00	0	19	0	19	n	0.00	0	22	0	22	n	0.07	1	13	1	13	n	0.00	0	25	0	25	n	0.18	2	9	2	9	y	0.05	1	20	1	20	n	0.08	1	11	1	11	n	0.00	0	8	0	8	n	0.00	0	16	0	16	n	0.12	1	7	1	7	n	0.00	0	19	0	19	n	ENSMUSG00000036023.7	Parp2	chr14	protein_coding	poly (ADP-ribose) polymerase family, member 2
novel_NIR_5915	chr14	51071471	51073449	-	51071024	51073449	A3SS	ENSMUST00000227193.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000006281.9	Tep1	chr14	protein_coding	telomerase associated protein 1
novel_NIR_5916	chr14	51074936	51075045	-	51074936	51075041	A5SS	ENSMUST00000006444.9	novel	0.17	1	5	1	5	n	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	17	0	17	n	0.00	0	6	0	6	n	0.17	3	15	3	15	y	0.00	0	2	0	2	n	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.00	0	11	0	11	n	0.14	2	12	2	12	n	ENSMUSG00000006281.9	Tep1	chr14	protein_coding	telomerase associated protein 1
novel_NIR_5917	chr14	51084130	51084290	-	51084052	51084290	A3SS	ENSMUST00000006444.9	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.22	2	7	2	7	y	0.00	0	12	0	12	n	0.00	0	16	0	16	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	ENSMUSG00000006281.9	Tep1	chr14	protein_coding	telomerase associated protein 1
novel_NIR_5918	chr14	51114306	51116087	+	51108013	51116087	A5SS	ENSMUST00000227103.2	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000097431.3	Gm26782	chr14	lncRNA	predicted gene, 26782
novel_NIR_5919	chr14	51182050	51196972	+	51193685	51196972	5pMXE	ENSMUST00000095925.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.06	1	15	1	15	n	1.00	3	0	3	0	y	0.25	1	3	1	3	n	0.14	2	12	2	12	n	0.40	2	3	2	3	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	ENSMUSG00000068417.9	Pnp2	chr14	protein_coding	purine-nucleoside phosphorylase 2
novel_NIR_5920	chr14	51182050	51196972	+	51193915	51196972	5pMXE	ENSMUST00000228593.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000068417.9	Pnp2	chr14	protein_coding	purine-nucleoside phosphorylase 2
novel_NIR_5921	chr14	51328710;51339207	51338936;51342264	+	51328710	51342264	cassetteExon	ENSMUST00000022428.13	novel	0.00	2.5	813	5;0	813	n	0.01	8.0	867	16;0	867	n	0.01	10.0	976	20;0	976	n	0.00	0.0	859	0;0	859	n	0.00	0.0	1238	0;0	1238	n	0.00	0.0	753	0;0	753	n	0.00	1.0	995	2;0	995	n	0.02	13.5	718	27;0	718	n	0.13	103.0	681	0;206	681	n	0.00	0.0	952	0;0	952	n	0.00	0.0	535	0;0	535	n	0.16	161.5	829	3;320	829	y	ENSMUSG00000021876.16	Rnase4	chr14	protein_coding	ribonuclease, RNase A family 4
novel_NIR_5922	chr14	51338946	51342264	+	51328710	51342264	A5SS	ENSMUST00000022428.13	novel	0.20	202	813	202	813	n	0.00	0	867	0	867	n	0.15	175	976	175	976	n	0.15	151	859	151	859	y	0.22	350	1238	350	1238	y	0.10	86	753	86	753	n	0.23	290	995	290	995	n	0.06	46	718	46	718	n	0.21	186	681	186	681	y	0.00	0	952	0	952	n	0.29	215	535	215	535	y	0.00	0	829	0	829	n	ENSMUSG00000021876.16	Rnase4	chr14	protein_coding	ribonuclease, RNase A family 4
novel_NIR_5923	chr14	51339207	51342264	+	51328710	51342264	A5SS	ENSMUST00000022428.13	novel	0.00	0	813	0	813	n	0.00	0	867	0	867	n	0.00	0	976	0	976	n	0.00	0	859	0	859	n	0.00	0	1238	0	1238	n	0.00	0	753	0	753	n	0.00	0	995	0	995	n	0.00	0	718	0	718	n	0.23	206	681	206	681	y	0.00	0	952	0	952	n	0.00	0	535	0	535	n	0.28	320	829	320	829	n	ENSMUSG00000021876.16	Rnase4	chr14	protein_coding	ribonuclease, RNase A family 4
novel_NIR_5924	chr14	51339248	51342264	+	51328710	51342264	A5SS	ENSMUST00000022428.13	novel	0.09	83	813	83	813	n	0.09	85	867	85	867	n	0.03	32	976	32	976	n	0.10	98	859	98	859	n	0.10	144	1238	144	1238	n	0.02	18	753	18	753	n	0.11	122	995	122	995	n	0.04	32	718	32	718	n	0.12	90	681	90	681	n	0.13	146	952	146	952	n	0.18	119	535	119	535	y	0.11	105	829	105	829	n	ENSMUSG00000021876.16	Rnase4	chr14	protein_coding	ribonuclease, RNase A family 4
novel_NIR_5925	chr14	52126293	52126413	+	52126293	52126985	A3SS	ENSMUST00000168217.8	novel	1.00	2	0	2	0	y	0.50	1	1	1	1	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000004561.15	Mettl17	chr14	protein_coding	methyltransferase like 17
novel_NIR_5926	chr14	52146391	52148137	-	52146391	52147622	5pMXE	ENSMUST00000226698.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
novel_NIR_5927	chr14	52149003	52149331	-	52149003	52150933	A5SS	ENSMUST00000228164.2	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	15	0	15	n	0.00	0	12	0	12	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00	0	9	0	9	n	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
novel_NIR_5928	chr14	52149003	52149405	-	52149003	52149412	A5SS	ENSMUST00000226528.2	novel	0.21	10	37	10	37	y	0.11	3	25	3	25	n	0.50	3	3	3	3	y	0.24	19	61	19	61	y	0.18	8	36	8	36	y	0.33	1	2	1	2	n	0.22	9	32	9	32	y	0.43	3	4	3	4	y	0.21	8	31	8	31	y	0.28	15	39	15	39	y	0.20	9	36	9	36	y	0.25	14	41	14	41	y	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
novel_NIR_5929	chr14	52149003	52149405	-	52149003	52150051	A5SS	ENSMUST00000226184.2	novel	0.29	10	25	10	25	y	0.14	3	19	3	19	n	0.43	3	4	3	4	y	0.33	19	38	19	38	y	0.14	8	48	8	48	n	0.25	1	3	1	3	n	0.26	9	26	9	26	y	0.38	3	5	3	5	y	0.28	8	21	8	21	y	0.22	15	52	15	52	y	0.24	9	29	9	29	y	0.29	14	35	14	35	y	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
novel_NIR_5930	chr14	52149003	52149405	-	52149003	52150933	A5SS	ENSMUST00000228164.2	novel	1.00	10	0	10	0	y	0.43	3	4	3	4	y	1.00	3	0	3	0	y	0.56	19	15	19	15	y	0.40	8	12	8	12	y	1.00	1	0	1	0	n	1.00	9	0	9	0	y	1.00	3	0	3	0	y	1.00	8	0	8	0	y	1.00	15	0	15	0	y	1.00	9	0	9	0	y	0.61	14	9	14	9	y	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
novel_NIR_5931	chr14	52149003	52149405	-	52149003	52151381	A5SS	ENSMUST00000227237.2	novel	0.03	10	278	10	278	n	0.02	3	150	3	150	n	0.33	3	6	3	6	y	0.04	19	408	19	408	n	0.03	8	290	8	290	n	0.09	1	10	1	10	n	0.02	9	392	9	392	n	0.11	3	24	3	24	n	0.03	8	267	8	267	n	0.03	15	514	15	514	n	0.04	9	234	9	234	n	0.05	14	272	14	272	n	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
novel_NIR_5932	chr14	52149003	52149556	-	52149003	52149412	5pMXE	ENSMUST00000226528.2	novel	0.29	15	37	15	37	y	0.24	8	25	8	25	y	0.57	4	3	4	3	y	0.30	26	61	26	61	y	0.35	19	36	19	36	y	0.33	1	2	1	2	n	0.37	19	32	19	32	y	0.00	0	4	0	4	n	0.40	21	31	21	31	y	0.29	16	39	16	39	y	0.36	20	36	20	36	y	0.32	19	41	19	41	y	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
novel_NIR_5933	chr14	52149003	52149556	-	52149003	52150051	A5SS	ENSMUST00000226184.2	novel	0.38	15	25	15	25	y	0.30	8	19	8	19	y	0.50	4	4	4	4	y	0.41	26	38	26	38	y	0.28	19	48	19	48	y	0.25	1	3	1	3	n	0.42	19	26	19	26	y	0.00	0	5	0	5	n	0.50	21	21	21	21	y	0.24	16	52	16	52	y	0.41	20	29	20	29	y	0.35	19	35	19	35	y	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
novel_NIR_5934	chr14	52149003	52149556	-	52149003	52150933	A5SS	ENSMUST00000228164.2	novel	1.00	15	0	15	0	y	0.67	8	4	8	4	y	1.00	4	0	4	0	y	0.63	26	15	26	15	y	0.61	19	12	19	12	y	1.00	1	0	1	0	n	1.00	19	0	19	0	y	-	-	-	-	-	-	1.00	21	0	21	0	y	1.00	16	0	16	0	y	1.00	20	0	20	0	y	0.68	19	9	19	9	y	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
novel_NIR_5935	chr14	52149003	52149556	-	52149003	52151381	A5SS	ENSMUST00000227237.2	novel	0.05	15	278	15	278	n	0.05	8	150	8	150	n	0.40	4	6	4	6	y	0.06	26	408	26	408	n	0.06	19	290	19	290	n	0.09	1	10	1	10	n	0.05	19	392	19	392	n	0.00	0	24	0	24	n	0.07	21	267	21	267	n	0.03	16	514	16	514	n	0.08	20	234	20	234	n	0.07	19	272	19	272	n	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
novel_NIR_5936	chr14	52149003	52149562	-	52149003	52149412	5pMXE	ENSMUST00000226528.2	novel	0.16	7	37	7	37	y	0.17	5	25	5	25	y	0.00	0	3	0	3	n	0.09	6	61	6	61	n	0.10	4	36	4	36	n	0.00	0	2	0	2	n	0.06	2	32	2	32	n	0.00	0	4	0	4	n	0.16	6	31	6	31	y	0.05	2	39	2	39	n	0.05	2	36	2	36	n	0.09	4	41	4	41	n	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
novel_NIR_5937	chr14	52149003	52149562	-	52149003	52150051	A5SS	ENSMUST00000226184.2	novel	0.22	7	25	7	25	y	0.21	5	19	5	19	y	0.00	0	4	0	4	n	0.14	6	38	6	38	n	0.08	4	48	4	48	n	0.00	0	3	0	3	n	0.07	2	26	2	26	n	0.00	0	5	0	5	n	0.22	6	21	6	21	y	0.04	2	52	2	52	n	0.06	2	29	2	29	n	0.10	4	35	4	35	n	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
novel_NIR_5938	chr14	52149003	52149562	-	52149003	52150933	A5SS	ENSMUST00000228164.2	novel	1.00	7	0	7	0	y	0.56	5	4	5	4	y	-	-	-	-	-	-	0.29	6	15	6	15	y	0.25	4	12	4	12	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	0.31	4	9	4	9	y	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
novel_NIR_5939	chr14	52149003	52149751	-	52149003	52150933	A5SS	ENSMUST00000228164.2	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.06	1	15	1	15	n	0.00	0	12	0	12	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.00	0	9	0	9	n	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
novel_NIR_5940	chr14	52149003	52149753	-	52149003	52149412	5pMXE	ENSMUST00000226528.2	novel	0.37	22	37	22	37	y	0.31	11	25	11	25	y	0.00	0	3	0	3	n	0.20	15	61	15	61	y	0.33	18	36	18	36	y	0.00	0	2	0	2	n	0.36	18	32	18	32	y	0.33	2	4	2	4	y	0.52	33	31	33	31	y	0.51	41	39	41	39	y	0.44	28	36	28	36	y	0.55	50	41	50	41	y	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
novel_NIR_5941	chr14	52149003	52149753	-	52149003	52150051	A5SS	ENSMUST00000226184.2	novel	0.47	22	25	22	25	y	0.37	11	19	11	19	y	0.00	0	4	0	4	n	0.28	15	38	15	38	y	0.27	18	48	18	48	y	0.00	0	3	0	3	n	0.41	18	26	18	26	y	0.29	2	5	2	5	y	0.61	33	21	33	21	y	0.44	41	52	41	52	y	0.49	28	29	28	29	y	0.59	50	35	50	35	y	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
novel_NIR_5942	chr14	52149003	52149753	-	52149003	52150933	A5SS	ENSMUST00000228164.2	novel	1.00	22	0	22	0	y	0.73	11	4	11	4	y	-	-	-	-	-	-	0.50	15	15	15	15	y	0.60	18	12	18	12	y	-	-	-	-	-	-	1.00	18	0	18	0	y	1.00	2	0	2	0	y	1.00	33	0	33	0	y	1.00	41	0	41	0	y	1.00	28	0	28	0	y	0.85	50	9	50	9	y	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
novel_NIR_5943	chr14	52149003	52149757	-	52149003	52150933	A5SS	ENSMUST00000228164.2	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	15	0	15	n	0.14	2	12	2	12	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	0.00	0	9	0	9	n	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
novel_NIR_5944	chr14	52149003	52149786	-	52149003	52149412	5pMXE	ENSMUST00000226528.2	novel	0.00	0	37	0	37	n	0.00	0	25	0	25	n	0.00	0	3	0	3	n	0.00	0	61	0	61	n	0.00	0	36	0	36	n	0.00	0	2	0	2	n	0.00	0	32	0	32	n	0.00	0	4	0	4	n	0.00	0	31	0	31	n	0.32	18	39	18	39	y	0.00	0	36	0	36	n	0.00	0	41	0	41	n	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
novel_NIR_5945	chr14	52149003	52149786	-	52149003	52150051	A5SS	ENSMUST00000226184.2	novel	0.00	0	25	0	25	n	0.00	0	19	0	19	n	0.00	0	4	0	4	n	0.00	0	38	0	38	n	0.00	0	48	0	48	n	0.00	0	3	0	3	n	0.00	0	26	0	26	n	0.00	0	5	0	5	n	0.00	0	21	0	21	n	0.26	18	52	18	52	y	0.00	0	29	0	29	n	0.00	0	35	0	35	n	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
novel_NIR_5946	chr14	52149003	52149786	-	52149003	52150933	A5SS	ENSMUST00000228164.2	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	15	0	15	n	0.00	0	12	0	12	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	18	0	18	0	y	-	-	-	-	-	-	0.00	0	9	0	9	n	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
novel_NIR_5947	chr14	52149003	52149886	-	52149003	52150933	A5SS	ENSMUST00000228164.2	novel	1.00	1	0	1	0	n	0.20	1	4	1	4	n	-	-	-	-	-	-	0.21	4	15	4	15	y	0.08	1	12	1	12	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	0.25	3	9	3	9	y	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
novel_NIR_5948	chr14	52149003	52150223	-	52149003	52149412	5pMXE	ENSMUST00000226528.2	novel	0.12	5	37	5	37	n	0.19	6	25	6	25	y	0.00	0	3	0	3	n	0.03	2	61	2	61	n	0.16	7	36	7	36	y	0.00	0	2	0	2	n	0.11	4	32	4	32	n	0.20	1	4	1	4	n	0.18	7	31	7	31	y	0.03	1	39	1	39	n	0.10	4	36	4	36	n	0.13	6	41	6	41	n	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
novel_NIR_5949	chr14	52149003	52150223	-	52149003	52150051	A5SS	ENSMUST00000226184.2	novel	0.17	5	25	5	25	y	0.24	6	19	6	19	y	0.00	0	4	0	4	n	0.05	2	38	2	38	n	0.13	7	48	7	48	n	0.00	0	3	0	3	n	0.13	4	26	4	26	n	0.17	1	5	1	5	n	0.25	7	21	7	21	y	0.02	1	52	1	52	n	0.12	4	29	4	29	n	0.15	6	35	6	35	y	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
novel_NIR_5950	chr14	52149003	52150223	-	52149003	52150933	A5SS	ENSMUST00000228164.2	novel	1.00	5	0	5	0	y	0.60	6	4	6	4	y	-	-	-	-	-	-	0.12	2	15	2	15	n	0.37	7	12	7	12	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	7	0	7	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	0.40	6	9	6	9	y	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
novel_NIR_5951	chr14	52149003	52150245	-	52149003	52150933	A5SS	ENSMUST00000228164.2	novel	1.00	1	0	1	0	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.17	3	15	3	15	y	0.00	0	12	0	12	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	9	0	9	n	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
novel_NIR_5952	chr14	52149003	52150515	-	52149003	52149412	5pMXE	ENSMUST00000226528.2	novel	0.18	8	37	8	37	y	0.11	3	25	3	25	n	0.00	0	3	0	3	n	0.15	11	61	11	61	y	0.22	10	36	10	36	y	0.00	0	2	0	2	n	0.18	7	32	7	32	y	0.00	0	4	0	4	n	0.14	5	31	5	31	n	0.28	15	39	15	39	y	0.10	4	36	4	36	n	0.13	6	41	6	41	n	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
novel_NIR_5953	chr14	52149003	52150515	-	52149003	52150051	5pMXE	ENSMUST00000226184.2	novel	0.24	8	25	8	25	y	0.14	3	19	3	19	n	0.00	0	4	0	4	n	0.22	11	38	11	38	y	0.17	10	48	10	48	y	0.00	0	3	0	3	n	0.21	7	26	7	26	y	0.00	0	5	0	5	n	0.19	5	21	5	21	y	0.22	15	52	15	52	y	0.12	4	29	4	29	n	0.15	6	35	6	35	y	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
novel_NIR_5954	chr14	52149003	52150515	-	52149003	52150933	A5SS	ENSMUST00000228164.2	novel	1.00	8	0	8	0	y	0.43	3	4	3	4	y	-	-	-	-	-	-	0.42	11	15	11	15	y	0.45	10	12	10	12	y	-	-	-	-	-	-	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	15	0	15	0	y	1.00	4	0	4	0	y	0.40	6	9	6	9	y	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
novel_NIR_5955	chr14	52149003	52151781	-	52149003	52149412	5pMXE	ENSMUST00000226528.2	novel	0.05	2	37	2	37	n	0.00	0	25	0	25	n	0.00	0	3	0	3	n	0.00	0	61	0	61	n	0.08	3	36	3	36	n	0.33	1	2	1	2	n	0.00	0	32	0	32	n	0.43	3	4	3	4	y	0.00	0	31	0	31	n	0.03	1	39	1	39	n	0.03	1	36	1	36	n	0.00	0	41	0	41	n	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
novel_NIR_5956	chr14	52149003	52151781	-	52149003	52150051	5pMXE	ENSMUST00000226184.2	novel	0.07	2	25	2	25	n	0.00	0	19	0	19	n	0.00	0	4	0	4	n	0.00	0	38	0	38	n	0.06	3	48	3	48	n	0.25	1	3	1	3	n	0.00	0	26	0	26	n	0.38	3	5	3	5	y	0.00	0	21	0	21	n	0.02	1	52	1	52	n	0.03	1	29	1	29	n	0.00	0	35	0	35	n	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
novel_NIR_5957	chr14	52149003	52151781	-	52149003	52150933	5pMXE	ENSMUST00000228164.2	novel	1.00	2	0	2	0	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	15	0	15	n	0.20	3	12	3	12	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	9	0	9	n	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
novel_NIR_5958	chr14	52224993	52226159	+	52225057	52226159	A5SS	ENSMUST00000182905.8	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	ENSMUSG00000004562.17	Arhgef40	chr14	protein_coding	Rho guanine nucleotide exchange factor (GEF) 40
novel_NIR_5959	chr14	52247119	52257648	-	52247119	52247427	A5SS&ES	ENSMUST00000067549.15	novel	0.06	1	16	1	16	n	0.00	0	5	0	5	n	0.00	0	15	0	15	n	0.17	4	20	4	20	y	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.00	0	17	0	17	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.00	0	30	0	30	n	0.00	0	17	0	17	n	0.00	0	12	0	12	n	ENSMUSG00000049295.18	Zfp219	chr14	protein_coding	zinc finger protein 219
novel_NIR_5960	chr14	52247119	52257648	-	52247119	52257980	A5SS	ENSMUST00000228580.2	novel	0.25	1	3	1	3	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.31	4	9	4	9	y	0.00	0	20	0	20	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	ENSMUSG00000049295.18	Zfp219	chr14	protein_coding	zinc finger protein 219
novel_NIR_5961	chr14	52247119	52257648	-	52247119;52247515	52247427;52257648	ES	ENSMUST00000226554.2	novel	0.11	1	8.0	1	16;0	n	0.00	0	2.5	0	5;0	n	0.00	0	8.0	0	15;1	n	0.28	4	10.5	4	20;1	y	0.00	0	8.0	0	14;2	n	0.00	0	5.0	0	10;0	n	0.00	0	8.5	0	17;0	n	0.00	0	5.5	0	11;0	n	0.00	0	7.0	0	14;0	n	0.00	0	16.0	0	30;2	n	0.00	0	9.0	0	17;1	n	0.00	0	6.0	0	12;0	n	ENSMUSG00000049295.18	Zfp219	chr14	protein_coding	zinc finger protein 219
novel_NIR_5962	chr14	52247119	52257648	-	52252725	52257648	3pMXE	ENSMUST00000227420.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000049295.18	Zfp219	chr14	protein_coding	zinc finger protein 219
novel_NIR_5963	chr14	52247515	52257205	-	52247515	52247820	5pMXE	ENSMUST00000228747.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000049295.18	Zfp219	chr14	protein_coding	zinc finger protein 219
novel_NIR_5964	chr14	52247515	52257205	-	52247515	52248239	5pMXE	ENSMUST00000226964.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000049295.18	Zfp219	chr14	protein_coding	zinc finger protein 219
novel_NIR_5965	chr14	52247515	52257205	-	52247515	52251963	5pMXE	ENSMUST00000226522.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000049295.18	Zfp219	chr14	protein_coding	zinc finger protein 219
novel_NIR_5966	chr14	52247515	52257205	-	52247515	52252308	5pMXE	ENSMUST00000228051.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000049295.18	Zfp219	chr14	protein_coding	zinc finger protein 219
novel_NIR_5967	chr14	52247515	52257205	-	52247515	52252405	5pMXE	ENSMUST00000226527.2	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.50	3	3	3	3	y	0.20	1	4	1	4	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.29	2	5	2	5	y	0.12	1	7	1	7	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	ENSMUSG00000049295.18	Zfp219	chr14	protein_coding	zinc finger protein 219
novel_NIR_5968	chr14	52247515	52257205	-	52247515	52256952	5pMXE	ENSMUST00000226605.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000049295.18	Zfp219	chr14	protein_coding	zinc finger protein 219
novel_NIR_5969	chr14	52247515	52257205	-	52247515	52257648	A5SS	ENSMUST00000226554.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	0.50	1	1	1	1	n	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.33	1	2	1	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000049295.18	Zfp219	chr14	protein_coding	zinc finger protein 219
novel_NIR_5970	chr14	52247515	52257205	-	52247515	52257980	A5SS	ENSMUST00000067549.15	novel	0.00	0	18	0	18	n	0.00	0	3	0	3	n	0.38	3	5	3	5	y	0.07	1	14	1	14	n	0.18	2	9	2	9	y	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.25	2	6	2	6	y	0.04	1	22	1	22	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	ENSMUSG00000049295.18	Zfp219	chr14	protein_coding	zinc finger protein 219
novel_NIR_5971	chr14	52247515	52257205	-	52247515;52252509	52252405;52257205	ES	ENSMUST00000228162.2	novel	0.00	0	1.5	0	3;0	n	0.00	0	0.5	0	1;0	n	0.67	3	1.5	3	3;0	y	0.33	1	2.0	1	4;0	n	0.67	2	1.0	2	2;0	y	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	0.40	2	3.0	2	5;1	y	0.22	1	3.5	1	7;0	n	0.00	0	0.5	0	1;0	n	0.00	0	3.0	0	5;1	n	ENSMUSG00000049295.18	Zfp219	chr14	protein_coding	zinc finger protein 219
novel_NIR_5972	chr14	52252725	52257205	-	52252509	52257205	A3SS	ENSMUST00000228162.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000049295.18	Zfp219	chr14	protein_coding	zinc finger protein 219
novel_NIR_5973	chr14	52252725	52257205	-	52252725	52257648	A5SS	ENSMUST00000227420.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000049295.18	Zfp219	chr14	protein_coding	zinc finger protein 219
novel_NIR_5974	chr14	52253443	52254034	+	52253443	52254290	A3SS	ENSMUST00000226268.2	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000072571.4	Tmem253	chr14	protein_coding	transmembrane protein 253
novel_NIR_5975	chr14	52442452	52443038	+	52442452	52443150	A3SS	ENSMUST00000180857.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000097533.3	Gm26590	chr14	lncRNA	predicted gene, 26590
novel_NIR_5976	chr14	52442452	52443038	+	52442452	52450320	A3SS	ENSMUST00000227448.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000097533.3	Gm26590	chr14	lncRNA	predicted gene, 26590
novel_NIR_5977	chr14	52475245	52481585	-	52475245	52481890	A5SS	ENSMUST00000226307.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000053754.15	Chd8	chr14	protein_coding	chromodomain helicase DNA binding protein 8
novel_NIR_5978	chr14	52475245	52481585	-	52475245	52495135	A5SS	ENSMUST00000200169.6	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	6	0	6	n	ENSMUSG00000053754.15	Chd8	chr14	protein_coding	chromodomain helicase DNA binding protein 8
novel_NIR_5979	chr14	52502224	52503115	-	52502224	52503647	A5SS	ENSMUST00000022765.14	novel	0.80	4	1	4	1	n	1.00	1	0	1	0	n	0.33	2	4	2	4	n	0.12	1	7	1	7	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.71	5	2	5	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.57	4	3	4	3	y	ENSMUSG00000022159.17	Rab2b	chr14	protein_coding	RAB2B, member RAS oncogene family
novel_NIR_5980	chr14	52502224;52503223	52503115;52503647	-	52502224	52503647	cassetteExon	ENSMUST00000022765.14	novel	0.78	3.5	1	4;3	1	y	1.00	0.5	0	1;0	0	n	0.27	1.5	4	2;1	4	n	0.18	1.5	7	1;2	7	n	1.00	0.5	0	0;1	0	n	0.00	0.0	1	0;0	1	n	0.60	3.0	2	5;1	2	n	0.00	0.0	1	0;0	1	n	0.14	0.5	3	0;1	3	n	0.00	0.0	2	0;0	2	n	1.00	0.5	0	1;0	0	n	0.40	2.0	3	4;0	3	n	ENSMUSG00000022159.17	Rab2b	chr14	protein_coding	RAB2B, member RAS oncogene family
novel_NIR_5981	chr14	52503223	52503647	-	52501274	52503647	A3SS	ENSMUST00000100631.11	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022159.17	Rab2b	chr14	protein_coding	RAB2B, member RAS oncogene family
novel_NIR_5982	chr14	52537562	52542345	-	52537562	52542340	A5SS	ENSMUST00000174853.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022160.19	Mettl3	chr14	protein_coding	methyltransferase like 3
novel_NIR_5983	chr14	54654227	54655206	-	54654227	54654945	A5SS	ENSMUST00000195999.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	4	2	4	2	y	-	-	-	-	-	-	1.00	3	0	3	0	y	0.67	2	1	2	1	y	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	ENSMUSG00000000958.11	Slc7a7	chr14	protein_coding	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7
novel_NIR_5984	chr14	54654227	54655206	-	54654227	54655114	5pMXE	ENSMUST00000226753.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	4	4	4	4	y	0.00	0	1	0	1	n	1.00	3	0	3	0	y	0.22	2	7	2	7	y	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000000958.11	Slc7a7	chr14	protein_coding	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7
novel_NIR_5985	chr14	54922533	54923480	-	54922533	54923347	A5SS	ENSMUST00000125265.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022185.20	Acin1	chr14	protein_coding	apoptotic chromatin condensation inducer 1
novel_NIR_5986	chr14	55310431	55310670	-	55310521	55310670	A3SS	ENSMUST00000036328.9	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	0.09	1	10	1	10	n	0.15	2	11	2	11	y	0.29	5	12	5	12	y	0.20	1	4	1	4	n	0.00	0	6	0	6	n	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	ENSMUSG00000040721.10	Zfhx2	chr14	protein_coding	zinc finger homeobox 2
novel_NIR_5987	chr14	55341911	55342288	-	55341915	55342288	A3SS	ENSMUST00000151314.9	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.23	3	10	3	10	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000040701.17	Ap1g2	chr14	protein_coding	adaptor protein complex AP-1, gamma 2 subunit
novel_NIR_5988	chr14	55341911	55342288	-	55342115	55342288	A3SS&ES	ENSMUST00000036041.15	novel	0.00	0	13	0	13	n	0.00	0	1	0	1	n	0.27	3	8	3	8	y	0.00	0	8	0	8	n	0.00	0	18	0	18	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	14	0	14	n	0.00	0	16	0	16	n	ENSMUSG00000040701.17	Ap1g2	chr14	protein_coding	adaptor protein complex AP-1, gamma 2 subunit
novel_NIR_5989	chr14	55717660	55718520	+	55717660	55724550	A3SS	ENSMUST00000227488.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000022210.8	Dhrs4	chr14	protein_coding	dehydrogenase/reductase (SDR family) member 4
novel_NIR_5990	chr14	55717660	55718520	+	55717660	55725041	A3SS	ENSMUST00000226902.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000022210.8	Dhrs4	chr14	protein_coding	dehydrogenase/reductase (SDR family) member 4
novel_NIR_5991	chr14	55717660	55721225	+	55717660	55724550	A3SS	ENSMUST00000227488.2	novel	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022210.8	Dhrs4	chr14	protein_coding	dehydrogenase/reductase (SDR family) member 4
novel_NIR_5992	chr14	55717660	55721225	+	55717660	55725041	A3SS	ENSMUST00000226902.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022210.8	Dhrs4	chr14	protein_coding	dehydrogenase/reductase (SDR family) member 4
novel_NIR_5993	chr14	55717660	55722603	+	55717660	55724550	A3SS	ENSMUST00000227488.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022210.8	Dhrs4	chr14	protein_coding	dehydrogenase/reductase (SDR family) member 4
novel_NIR_5994	chr14	55717660	55722603	+	55717660	55725041	A3SS	ENSMUST00000226902.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022210.8	Dhrs4	chr14	protein_coding	dehydrogenase/reductase (SDR family) member 4
novel_NIR_5995	chr14	55723663	55724550	+	55717660	55724550	A5SS	ENSMUST00000227488.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.70	7	3	7	3	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022210.8	Dhrs4	chr14	protein_coding	dehydrogenase/reductase (SDR family) member 4
novel_NIR_5996	chr14	55724626	55724717	+	55723675	55724717	A5SS	ENSMUST00000228353.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.80	8	2	8	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000022210.8	Dhrs4	chr14	protein_coding	dehydrogenase/reductase (SDR family) member 4
novel_NIR_5997	chr14	55781230	55781345	+	55781230	55781317	A3SS	ENSMUST00000048781.4	novel	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	27	0	27	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.29	2	5	2	5	y	ENSMUSG00000040618.8	Pck2	chr14	protein_coding	phosphoenolpyruvate carboxykinase 2 (mitochondrial)
novel_NIR_5998	chr14	55797582	55798532	+	55797578	55798532	A5SS	ENSMUST00000150019.8	novel	0.00	0	21	0	21	n	0.08	1	11	1	11	n	0.00	0	3	0	3	n	0.18	4	18	4	18	y	0.05	1	19	1	19	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.18	2	9	2	9	y	0.05	1	19	1	19	n	0.00	0	20	0	20	n	0.00	0	11	0	11	n	ENSMUSG00000022214.16	Dcaf11	chr14	protein_coding	DDB1 and CUL4 associated factor 11
novel_NIR_5999	chr14	55797582	55798532	+	55798084	55798532	A5SS&ES	ENSMUST00000133256.8	novel	0.00	0	10	0	10	n	0.05	1	18	1	18	n	0.00	0	4	0	4	n	0.19	4	17	4	17	y	0.08	1	12	1	12	n	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.00	0	3	0	3	n	0.13	2	13	2	13	n	0.04	1	22	1	22	n	0.00	0	15	0	15	n	0.00	0	19	0	19	n	ENSMUSG00000022214.16	Dcaf11	chr14	protein_coding	DDB1 and CUL4 associated factor 11
novel_NIR_6000	chr14	55797582	55798532	+	55798275	55798532	5pMXE	ENSMUST00000127991.2	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.80	4	1	4	1	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000022214.16	Dcaf11	chr14	protein_coding	DDB1 and CUL4 associated factor 11
novel_NIR_6001	chr14	55797582	55798532	+	55798432	55798532	5pMXE	ENSMUST00000072530.11	novel	0.00	0	6	0	6	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.33	4	8	4	8	y	0.12	1	7	1	7	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.25	2	6	2	6	y	0.10	1	9	1	9	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	ENSMUSG00000022214.16	Dcaf11	chr14	protein_coding	DDB1 and CUL4 associated factor 11
novel_NIR_6002	chr14	55798084	55798670	+	55798084	55798532	A3SS	ENSMUST00000133256.8	novel	0.29	4	10	4	10	y	0.00	0	18	0	18	n	0.00	0	4	0	4	n	0.00	0	17	0	17	n	0.08	1	12	1	12	n	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.00	0	3	0	3	n	0.19	3	13	3	13	y	0.00	0	22	0	22	n	0.00	0	15	0	15	n	0.00	0	19	0	19	n	ENSMUSG00000022214.16	Dcaf11	chr14	protein_coding	DDB1 and CUL4 associated factor 11
novel_NIR_6003	chr14	55798084	55798670	+	55798084	55798667	A3SS	ENSMUST00000143431.2	novel	0.21	4	15	4	15	y	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.08	1	12	1	12	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.19	3	13	3	13	y	0.00	0	29	0	29	n	0.00	0	13	0	13	n	0.00	0	15	0	15	n	ENSMUSG00000022214.16	Dcaf11	chr14	protein_coding	DDB1 and CUL4 associated factor 11
novel_NIR_6004	chr14	55798084	55798670	+	55798084	55798693	A3SS	ENSMUST00000150481.8	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	ENSMUSG00000022214.16	Dcaf11	chr14	protein_coding	DDB1 and CUL4 associated factor 11
novel_NIR_6005	chr14	55798275	55798670	+	55798275	55798532	3pMXE	ENSMUST00000127991.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.60	3	2	3	2	y	ENSMUSG00000022214.16	Dcaf11	chr14	protein_coding	DDB1 and CUL4 associated factor 11
novel_NIR_6006	chr14	55798432	55798667	+	55798084	55798667	A5SS	ENSMUST00000143431.2	novel	0.17	3	15	3	15	y	0.00	0	13	0	13	n	0.33	4	8	4	8	y	0.21	3	11	3	11	y	0.37	7	12	7	12	y	0.00	0	6	0	6	n	0.38	6	10	6	10	y	0.27	4	11	4	11	y	0.28	5	13	5	13	y	0.17	6	29	6	29	y	0.32	6	13	6	13	y	0.38	9	15	9	15	y	ENSMUSG00000022214.16	Dcaf11	chr14	protein_coding	DDB1 and CUL4 associated factor 11
novel_NIR_6007	chr14	55798432	55798667	+	55798432	55798532	A3SS	ENSMUST00000072530.11	novel	0.33	3	6	3	6	y	0.00	0	3	0	3	n	0.80	4	1	4	1	y	0.27	3	8	3	8	y	0.50	7	7	7	7	y	0.00	0	1	0	1	n	0.43	6	8	6	8	y	0.33	4	8	4	8	y	0.45	5	6	5	6	y	0.40	6	9	6	9	y	0.50	6	6	6	6	y	0.47	9	10	9	10	y	ENSMUSG00000022214.16	Dcaf11	chr14	protein_coding	DDB1 and CUL4 associated factor 11
novel_NIR_6008	chr14	55798432	55798670	+	55798432	55798532	A3SS	ENSMUST00000072530.11	novel	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.11	1	8	1	8	n	0.30	3	7	3	7	y	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.09	1	10	1	10	n	ENSMUSG00000022214.16	Dcaf11	chr14	protein_coding	DDB1 and CUL4 associated factor 11
novel_NIR_6009	chr14	55798899	55799710	+	55798899	55800404	A3SS	ENSMUST00000117701.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.40	4	6	4	6	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000022214.16	Dcaf11	chr14	protein_coding	DDB1 and CUL4 associated factor 11
novel_NIR_6010	chr14	55798899	55800351	+	55798899	55800404	A3SS	ENSMUST00000117701.8	novel	-	-	-	-	-	-	1.00	7	0	7	0	y	0.00	0	6	0	6	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022214.16	Dcaf11	chr14	protein_coding	DDB1 and CUL4 associated factor 11
novel_NIR_6011	chr14	55800956	55801531	+	55800956	55801510	A3SS	ENSMUST00000117701.8	novel	0.83	5	1	5	1	y	0.50	3	3	3	3	y	0.50	2	2	2	2	y	0.50	1	1	1	1	n	0.00	0	4	0	4	n	1.00	1	0	1	0	n	0.78	7	2	7	2	y	-	-	-	-	-	-	0.67	4	2	4	2	y	1.00	10	0	10	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	ENSMUSG00000022214.16	Dcaf11	chr14	protein_coding	DDB1 and CUL4 associated factor 11
novel_NIR_6012	chr14	55800956	55801556	+	55800956	55801510	A3SS	ENSMUST00000117701.8	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000022214.16	Dcaf11	chr14	protein_coding	DDB1 and CUL4 associated factor 11
novel_NIR_6013	chr14	55818120	55818207	+	55818120	55818240	A3SS	ENSMUST00000089619.13	novel	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000022216.18	Psme1	chr14	protein_coding	proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)
novel_NIR_6014	chr14	55818426	55818509	+	55818433	55818509	A5SS	ENSMUST00000174419.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	ENSMUSG00000022216.18	Psme1	chr14	protein_coding	proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)
novel_NIR_6015	chr14	55818428	55818509	+	55818433	55818509	A5SS	ENSMUST00000174419.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.33	2	4	2	4	y	ENSMUSG00000022216.18	Psme1	chr14	protein_coding	proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)
novel_NIR_6016	chr14	55819200	55819513	-	55819200	55822136	A5SS	ENSMUST00000174352.8	novel	0.60	3	2	3	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022217.15	Emc9	chr14	protein_coding	ER membrane protein complex subunit 9
novel_NIR_6017	chr14	55821575	55822136	-	55819200	55822136	A3SS	ENSMUST00000174352.8	novel	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000022217.15	Emc9	chr14	protein_coding	ER membrane protein complex subunit 9
novel_NIR_6018	chr14	55830358	55830463	+	55830349	55830463	A5SS	ENSMUST00000019443.15	novel	0.00	0	16	0	16	n	0.20	2	8	2	8	y	0.00	0	27	0	27	n	0.00	0	13	0	13	n	0.00	0	21	0	21	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	31	0	31	n	0.12	2	15	2	15	n	0.00	0	15	0	15	n	ENSMUSG00000047098.19	Rnf31	chr14	protein_coding	ring finger protein 31
novel_NIR_6019	chr14	55839395	55840713	+	55839212	55840713	A5SS	ENSMUST00000227708.2	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000047098.19	Rnf31	chr14	protein_coding	ring finger protein 31
novel_NIR_6020	chr14	55841363	55841925	+	55841700	55841925	A5SS	ENSMUST00000134863.8	novel	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.17	2	10	2	10	y	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000002325.16	Irf9	chr14	protein_coding	interferon regulatory factor 9
novel_NIR_6021	chr14	55864291	55864797	-	55863693	55864797	A3SS	ENSMUST00000141499.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000002319.17	Ipo4	chr14	protein_coding	importin 4
novel_NIR_6022	chr14	55865688	55866251	-	55866141	55866251	3pMXE	ENSMUST00000127773.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000002319.17	Ipo4	chr14	protein_coding	importin 4
novel_NIR_6023	chr14	55866444	55866530	-	55866444	55866524	A5SS	ENSMUST00000047131.16	novel	0.15	10	57	10	57	y	0.02	1	58	1	58	n	0.04	5	118	5	118	n	0.05	4	71	4	71	n	0.08	7	80	7	80	n	0.00	0	54	0	54	n	0.10	7	65	7	65	n	0.00	0	39	0	39	n	0.06	3	49	3	49	n	0.14	10	64	10	64	n	0.06	3	50	3	50	n	0.13	9	62	9	62	n	ENSMUSG00000002319.17	Ipo4	chr14	protein_coding	importin 4
novel_NIR_6024	chr14	55874069	55875480	-	55874069	55875367	A5SS	ENSMUST00000121937.8	novel	1.00	6	0	6	0	y	1.00	10	0	10	0	y	1.00	9	0	9	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	10	0	10	0	y	0.80	4	1	4	1	y	1.00	4	0	4	0	y	1.00	8	0	8	0	y	1.00	2	0	2	0	y	ENSMUSG00000002320.16	Tm9sf1	chr14	protein_coding	transmembrane 9 superfamily member 1
novel_NIR_6025	chr14	55874069	55877842	-	55875962	55877842	3pMXE	ENSMUST00000130167.8	novel	0.50	1	1	1	1	n	0.50	3	3	3	3	y	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.50	3	3	3	3	y	0.43	3	4	3	4	y	0.00	0	1	0	1	n	0.57	4	3	4	3	y	0.50	3	3	3	3	y	0.33	1	2	1	2	n	0.20	1	4	1	4	n	0.75	3	1	3	1	y	ENSMUSG00000002320.16	Tm9sf1	chr14	protein_coding	transmembrane 9 superfamily member 1
novel_NIR_6026	chr14	55875650	55877842	-	55875527	55877842	A3SS	ENSMUST00000149726.8	novel	1.00	5	0	5	0	y	1.00	10	0	10	0	y	1.00	15	0	15	0	y	0.50	2	2	2	2	y	1.00	10	0	10	0	y	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	5	0	5	0	y	1.00	8	0	8	0	y	0.67	6	3	6	3	y	0.70	7	3	7	3	y	1.00	1	0	1	0	n	ENSMUSG00000002320.16	Tm9sf1	chr14	protein_coding	transmembrane 9 superfamily member 1
novel_NIR_6027	chr14	55875650	55877842	-	55875962	55877842	3pMXE	ENSMUST00000130167.8	novel	0.83	5	1	5	1	y	0.77	10	3	10	3	y	0.83	15	3	15	3	y	1.00	2	0	2	0	y	0.77	10	3	10	3	y	0.50	4	4	4	4	y	0.75	3	1	3	1	y	0.62	5	3	5	3	y	0.73	8	3	8	3	y	0.75	6	2	6	2	y	0.64	7	4	7	4	y	0.50	1	1	1	1	n	ENSMUSG00000002320.16	Tm9sf1	chr14	protein_coding	transmembrane 9 superfamily member 1
novel_NIR_6028	chr14	55878027	55878644	-	55878027	55878727	A5SS	ENSMUST00000139313.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.20	1	4	1	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000002320.16	Tm9sf1	chr14	protein_coding	transmembrane 9 superfamily member 1
novel_NIR_6029	chr14	55880206	55880587	-	55880206	55880839	A5SS	ENSMUST00000139313.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000002320.16	Tm9sf1	chr14	protein_coding	transmembrane 9 superfamily member 1
novel_NIR_6030	chr14	55880206	55880587	-	55880412	55880587	A3SS	ENSMUST00000133707.2	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.33	2	4	2	4	y	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000002320.16	Tm9sf1	chr14	protein_coding	transmembrane 9 superfamily member 1
novel_NIR_6031	chr14	55880206	55880637	-	55880206	55880839	A5SS	ENSMUST00000139313.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000002320.16	Tm9sf1	chr14	protein_coding	transmembrane 9 superfamily member 1
novel_NIR_6032	chr14	55880412	55880537	-	55880412	55880587	A5SS	ENSMUST00000133707.2	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.69	11	5	11	5	y	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.62	5	3	5	3	y	0.36	4	7	4	7	y	0.12	1	7	1	7	n	0.00	0	3	0	3	n	0.67	4	2	4	2	y	0.25	1	3	1	3	n	0.00	0	1	0	1	n	ENSMUSG00000002320.16	Tm9sf1	chr14	protein_coding	transmembrane 9 superfamily member 1
novel_NIR_6033	chr14	55880412	55880537	-	55880412	55880637	A5SS	ENSMUST00000120041.8	novel	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.39	11	17	11	17	y	0.00	0	20	0	20	n	0.00	0	21	0	21	n	0.21	5	19	5	19	y	0.24	4	13	4	13	y	0.06	1	16	1	16	n	0.00	0	9	0	9	n	0.27	4	11	4	11	y	0.25	1	3	1	3	n	0.00	0	7	0	7	n	ENSMUSG00000002320.16	Tm9sf1	chr14	protein_coding	transmembrane 9 superfamily member 1
novel_NIR_6034	chr14	55880412	55880537	-	55880412	55880709	A5SS	ENSMUST00000121791.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	11	0	11	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	5	0	5	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000002320.16	Tm9sf1	chr14	protein_coding	transmembrane 9 superfamily member 1
novel_NIR_6035	chr14	55880412	55880537	-	55880412	55880839	A5SS	ENSMUST00000122358.8	novel	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.39	11	17	11	17	y	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.50	5	5	5	5	y	0.33	4	8	4	8	y	0.12	1	7	1	7	n	0.00	0	3	0	3	n	0.36	4	7	4	7	y	0.10	1	9	1	9	n	0.00	0	8	0	8	n	ENSMUSG00000002320.16	Tm9sf1	chr14	protein_coding	transmembrane 9 superfamily member 1
novel_NIR_6036	chr14	55880412	55880537	-	55880412	55881054	A5SS	ENSMUST00000138085.2	novel	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.42	11	15	11	15	y	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.36	5	9	5	9	y	0.33	4	8	4	8	y	0.14	1	6	1	6	n	0.00	0	2	0	2	n	0.57	4	3	4	3	y	0.33	1	2	1	2	n	0.00	0	6	0	6	n	ENSMUSG00000002320.16	Tm9sf1	chr14	protein_coding	transmembrane 9 superfamily member 1
novel_NIR_6037	chr14	55880412	55880719	-	55880412	55880587	A5SS	ENSMUST00000133707.2	novel	0.00	0	5	0	5	n	0.75	6	2	6	2	y	0.55	6	5	6	5	y	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.40	2	3	2	3	y	0.12	1	7	1	7	n	0.00	0	7	0	7	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.50	3	3	3	3	y	0.00	0	1	0	1	n	ENSMUSG00000002320.16	Tm9sf1	chr14	protein_coding	transmembrane 9 superfamily member 1
novel_NIR_6038	chr14	55880412	55880719	-	55880412	55880637	5pMXE	ENSMUST00000120041.8	novel	0.00	0	5	0	5	n	0.55	6	5	6	5	y	0.26	6	17	6	17	y	0.00	0	20	0	20	n	0.00	0	21	0	21	n	0.10	2	19	2	19	n	0.07	1	13	1	13	n	0.00	0	16	0	16	n	0.18	2	9	2	9	y	0.00	0	11	0	11	n	0.50	3	3	3	3	y	0.00	0	7	0	7	n	ENSMUSG00000002320.16	Tm9sf1	chr14	protein_coding	transmembrane 9 superfamily member 1
novel_NIR_6039	chr14	55880412	55880719	-	55880412	55880709	A5SS	ENSMUST00000121791.8	novel	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	6	0	6	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000002320.16	Tm9sf1	chr14	protein_coding	transmembrane 9 superfamily member 1
novel_NIR_6040	chr14	55880412	55880719	-	55880412	55880839	A5SS	ENSMUST00000122358.8	novel	0.00	0	5	0	5	n	0.50	6	6	6	6	y	0.26	6	17	6	17	y	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.29	2	5	2	5	y	0.11	1	8	1	8	n	0.00	0	7	0	7	n	0.40	2	3	2	3	y	0.00	0	7	0	7	n	0.25	3	9	3	9	y	0.00	0	8	0	8	n	ENSMUSG00000002320.16	Tm9sf1	chr14	protein_coding	transmembrane 9 superfamily member 1
novel_NIR_6041	chr14	55880412	55880719	-	55880412	55881054	A5SS	ENSMUST00000138085.2	novel	0.00	0	9	0	9	n	0.60	6	4	6	4	y	0.29	6	15	6	15	y	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.18	2	9	2	9	y	0.11	1	8	1	8	n	0.00	0	6	0	6	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.60	3	2	3	2	y	0.00	0	6	0	6	n	ENSMUSG00000002320.16	Tm9sf1	chr14	protein_coding	transmembrane 9 superfamily member 1
novel_NIR_6042	chr14	55910258	55910411	+	55910258	55910407	A3SS	ENSMUST00000226735.2	novel	0.00	0	29	0	29	n	0.21	7	26	7	26	y	0.00	0	39	0	39	n	0.00	0	30	0	30	n	0.00	0	43	0	43	n	0.00	0	10	0	10	n	0.00	0	35	0	35	n	0.00	0	19	0	19	n	0.00	0	29	0	29	n	0.00	0	44	0	44	n	0.00	0	38	0	38	n	0.00	0	39	0	39	n	ENSMUSG00000002326.7	Gmpr2	chr14	protein_coding	guanosine monophosphate reductase 2
novel_NIR_6043	chr14	55914738	55916750	-	55914738	55916971	A5SS	ENSMUST00000227842.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000007589.10	Tinf2	chr14	protein_coding	Terf1 (TRF1)-interacting nuclear factor 2
novel_NIR_6044	chr14	55950211	55950640	-	55950211	55950392	5pMXE	ENSMUST00000002389.9	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.33	3	6	3	6	y	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	ENSMUSG00000022218.17	Tgm1	chr14	protein_coding	transglutaminase 1, K polypeptide
novel_NIR_6045	chr14	55950211	55950640	-	55950211	55950450	5pMXE	ENSMUST00000226907.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022218.17	Tgm1	chr14	protein_coding	transglutaminase 1, K polypeptide
novel_NIR_6046	chr14	55950211	55950640	-	55950211	55950745	A5SS	ENSMUST00000168729.8	novel	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.25	1	3	1	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.38	3	5	3	5	y	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000022218.17	Tgm1	chr14	protein_coding	transglutaminase 1, K polypeptide
novel_NIR_6047	chr14	55950211	55950640	-	55950211	55950844	A5SS	ENSMUST00000178034.9	novel	0.00	0	10	0	10	n	0.00	0	19	0	19	n	0.00	0	22	0	22	n	0.03	1	32	1	32	n	0.00	0	38	0	38	n	0.00	0	11	0	11	n	0.00	0	17	0	17	n	0.00	0	16	0	16	n	0.33	3	6	3	6	y	0.05	1	20	1	20	n	0.00	0	13	0	13	n	0.00	0	19	0	19	n	ENSMUSG00000022218.17	Tgm1	chr14	protein_coding	transglutaminase 1, K polypeptide
novel_NIR_6048	chr14	55950211	55950640	-	55950211	55951231	A5SS	ENSMUST00000227958.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022218.17	Tgm1	chr14	protein_coding	transglutaminase 1, K polypeptide
novel_NIR_6049	chr14	55950211	55950645	-	55950211	55950392	5pMXE	ENSMUST00000002389.9	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	ENSMUSG00000022218.17	Tgm1	chr14	protein_coding	transglutaminase 1, K polypeptide
novel_NIR_6050	chr14	55950211	55950645	-	55950211	55950450	5pMXE	ENSMUST00000226907.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022218.17	Tgm1	chr14	protein_coding	transglutaminase 1, K polypeptide
novel_NIR_6051	chr14	55950211	55950645	-	55950211	55950745	A5SS	ENSMUST00000168729.8	novel	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.25	2	6	2	6	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000022218.17	Tgm1	chr14	protein_coding	transglutaminase 1, K polypeptide
novel_NIR_6052	chr14	55950211	55950645	-	55950211	55951231	A5SS	ENSMUST00000227958.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022218.17	Tgm1	chr14	protein_coding	transglutaminase 1, K polypeptide
novel_NIR_6053	chr14	55995467	55999365	+	55999001	55999365	5pMXE	ENSMUST00000044554.5	novel	0.14	1	6	1	6	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.62	5	3	5	3	y	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.50	3	3	3	3	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.20	2	8	2	8	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	ENSMUSG00000040432.6	Ltb4r2	chr14	protein_coding	leukotriene B4 receptor 2
novel_NIR_6054	chr14	56006954	56007253	-	56006954	56007249	A5SS	ENSMUST00000170223.9	novel	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.05	1	19	1	19	n	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	17	0	17	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.15	3	17	3	17	y	0.00	0	10	0	10	n	ENSMUSG00000022220.15	Adcy4	chr14	protein_coding	adenylate cyclase 4
novel_NIR_6055	chr14	56016551	56017160	-	56016519	56017160	A3SS	ENSMUST00000170223.9	novel	0.00	0	5	0	5	n	0.67	2	1	2	1	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000022220.15	Adcy4	chr14	protein_coding	adenylate cyclase 4
novel_NIR_6056	chr14	56125474	56131445	+	56125474	56126006	A3SS&ES	ENSMUST00000227462.2	novel	1.00	2	0	2	0	y	0.00	0	4	0	4	n	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.50	2	2	2	2	y	0.50	1	1	1	1	n	0.20	1	4	1	4	n	0.75	3	1	3	1	y	ENSMUSG00000047153.5	Khnyn	chr14	protein_coding	KH and NYN domain containing
novel_NIR_6057	chr14	56135469	56135710	-	56135469	56135700	A5SS	ENSMUST00000111325.5	novel	0.00	0	21	0	21	n	0.15	4	22	4	22	y	0.07	4	56	4	56	n	0.00	0	19	0	19	n	0.00	0	56	0	56	n	0.00	0	43	0	43	n	0.00	0	46	0	46	n	0.00	0	24	0	24	n	0.08	2	24	2	24	n	0.00	0	33	0	33	n	0.00	0	35	0	35	n	0.00	0	30	0	30	n	ENSMUSG00000022223.10	Sdr39u1	chr14	protein_coding	short chain dehydrogenase/reductase family 39U, member 1
novel_NIR_6058	chr14	56135469	56135710	-	56135469	56136641	A5SS	ENSMUST00000227387.2	novel	-	-	-	-	-	-	1.00	4	0	4	0	y	0.67	4	2	4	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022223.10	Sdr39u1	chr14	protein_coding	short chain dehydrogenase/reductase family 39U, member 1
novel_NIR_6059	chr14	56813878	56821616	+	56813187	56821616	A5SS	ENSMUST00000161553.2	novel	0.00	0	3	0	3	n	0.29	2	5	2	5	y	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	ENSMUSG00000054509.8	Parp4	chr14	protein_coding	poly (ADP-ribose) polymerase family, member 4
novel_NIR_6060	chr14	56823209	56823340	+	56823209	56825206	A3SS	ENSMUST00000161553.2	novel	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	ENSMUSG00000054509.8	Parp4	chr14	protein_coding	poly (ADP-ribose) polymerase family, member 4
novel_NIR_6061	chr14	56830854	56835033	+	56830854;56832871	56832711;56835033	ES	ENSMUST00000161553.2	novel	0.00	0	8.5	0	13;4	n	0.00	0	6.0	0	8;4	n	0.00	0	15.5	0	16;15	n	0.18	2	9.0	2	8;10	y	0.00	0	11.5	0	10;13	n	0.00	0	3.5	0	2;5	n	0.00	0	11.0	0	11;11	n	0.00	0	6.0	0	9;3	n	0.00	0	5.0	0	5;5	n	0.00	0	9.0	0	11;7	n	0.00	0	6.0	0	4;8	n	0.00	0	13.0	0	10;16	n	ENSMUSG00000054509.8	Parp4	chr14	protein_coding	poly (ADP-ribose) polymerase family, member 4
novel_NIR_6062	chr14	56832871	56835058	+	56832871	56835033	A3SS	ENSMUST00000161553.2	novel	0.33	2	4	2	4	y	0.00	0	4	0	4	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	16	0	16	n	ENSMUSG00000054509.8	Parp4	chr14	protein_coding	poly (ADP-ribose) polymerase family, member 4
novel_NIR_6063	chr14	56845020	56845291	-	56845020	56848605	A5SS	ENSMUST00000160334.8	novel	0.00	0	26	0	26	n	0.08	2	23	2	23	n	0.18	2	9	2	9	y	0.10	1	9	1	9	n	0.00	0	30	0	30	n	0.19	4	17	4	17	n	0.10	4	35	4	35	n	0.22	4	14	4	14	n	0.00	0	7	0	7	n	0.00	0	16	0	16	n	0.45	5	6	5	6	y	0.00	0	13	0	13	n	ENSMUSG00000090038.8	Gm16573	chr14	lncRNA	predicted gene 16573
novel_NIR_6064	chr14	56845020	56848609	-	56845020	56848605	A5SS	ENSMUST00000160334.8	novel	0.00	0	26	0	26	n	0.00	0	23	0	23	n	0.10	1	9	1	9	n	0.00	0	9	0	9	n	0.00	0	30	0	30	n	0.00	0	17	0	17	n	0.00	0	35	0	35	n	0.22	4	14	4	14	y	0.00	0	7	0	7	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	ENSMUSG00000090038.8	Gm16573	chr14	lncRNA	predicted gene 16573
novel_NIR_6065	chr14	56845020;56845379	56845291;56848605	-	56845020	56848605	cassetteExon	ENSMUST00000160334.8	novel	0.04	1.0	26	0;2	26	n	0.04	1.0	23	2;0	23	n	0.10	1.0	9	2;0	9	n	0.05	0.5	9	1;0	9	n	0.03	1.0	30	0;2	30	n	0.23	5.0	17	4;6	17	y	0.10	4.0	35	4;4	35	n	0.18	3.0	14	4;2	14	y	0.00	0.0	7	0;0	7	n	0.14	2.5	16	0;5	16	n	0.29	2.5	6	5;0	6	n	0.00	0.0	13	0;0	13	n	ENSMUSG00000090038.8	Gm16573	chr14	lncRNA	predicted gene 16573
novel_NIR_6066	chr14	56845379	56848605	-	56845020	56848605	A3SS	ENSMUST00000160334.8	novel	0.07	2	26	2	26	n	0.00	0	23	0	23	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.06	2	30	2	30	n	0.26	6	17	6	17	n	0.10	4	35	4	35	n	0.12	2	14	2	14	n	0.00	0	7	0	7	n	0.24	5	16	5	16	y	0.00	0	6	0	6	n	0.00	0	13	0	13	n	ENSMUSG00000090038.8	Gm16573	chr14	lncRNA	predicted gene 16573
novel_NIR_6067	chr14	56848691	56851142	-	56849196	56851142	A3SS&ES	ENSMUST00000160334.8	novel	0.22	2	7	2	7	y	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	19	0	19	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	ENSMUSG00000090038.8	Gm16573	chr14	lncRNA	predicted gene 16573
novel_NIR_6068	chr14	56848813	56851142	-	56848794	56851142	A3SS	ENSMUST00000162231.8	novel	0.17	9	44	9	44	y	0.11	3	24	3	24	n	0.05	1	18	1	18	n	0.18	7	31	7	31	y	0.04	3	68	3	68	n	0.07	2	28	2	28	n	0.04	2	48	2	48	n	0.06	4	59	4	59	n	0.09	3	29	3	29	n	0.06	2	30	2	30	n	0.06	2	29	2	29	n	0.00	0	37	0	37	n	ENSMUSG00000090038.8	Gm16573	chr14	lncRNA	predicted gene 16573
novel_NIR_6069	chr14	56848813	56851142	-	56849196	56851142	A3SS&ES	ENSMUST00000160334.8	novel	0.56	9	7	9	7	y	0.27	3	8	3	8	y	0.09	1	10	1	10	n	0.39	7	11	7	11	y	0.14	3	19	3	19	n	0.20	2	8	2	8	y	0.14	2	12	2	12	n	0.22	4	14	4	14	y	0.43	3	4	3	4	y	0.25	2	6	2	6	y	0.29	2	5	2	5	y	0.00	0	9	0	9	n	ENSMUSG00000090038.8	Gm16573	chr14	lncRNA	predicted gene 16573
novel_NIR_6070	chr14	56903395	56905356	-	56903395	56905281	A5SS	ENSMUST00000210920.2	novel	0.75	9	3	9	3	y	0.94	15	1	15	1	y	1.00	10	0	10	0	y	0.65	15	8	15	8	y	0.81	25	6	25	6	y	1.00	9	0	9	0	y	0.85	23	4	23	4	y	0.80	16	4	16	4	y	0.62	8	5	8	5	y	0.79	15	4	15	4	y	0.84	16	3	16	3	y	0.88	21	3	21	3	y	ENSMUSG00000110165.2	Btf3-ps18	chr14	transcribed_processed_pseudogene	basic transcription factor 3, pseudogene 18
novel_NIR_6071	chr14	56903395	56905356	-	56903395	56905385	A5SS	ENSMUST00000211600.2	novel	0.82	9	2	9	2	y	1.00	15	0	15	0	y	0.91	10	1	10	1	y	0.94	15	1	15	1	y	1.00	25	0	25	0	y	1.00	9	0	9	0	y	0.88	23	3	23	3	y	1.00	16	0	16	0	y	0.89	8	1	8	1	y	0.88	15	2	15	2	y	1.00	16	0	16	0	y	1.00	21	0	21	0	y	ENSMUSG00000110165.2	Btf3-ps18	chr14	transcribed_processed_pseudogene	basic transcription factor 3, pseudogene 18
novel_NIR_6072	chr14	56912232	56913979	+	56912196	56913979	A5SS	ENSMUST00000116468.2	novel	0.10	3	28	3	28	n	0.10	2	19	2	19	n	0.20	9	35	9	35	y	0.17	5	24	5	24	y	0.22	11	38	11	38	y	0.12	3	23	3	23	n	0.16	6	31	6	31	y	0.23	5	17	5	17	y	0.43	9	12	9	12	y	0.21	7	26	7	26	y	0.24	6	19	6	19	y	0.36	12	21	12	21	y	ENSMUSG00000079184.11	Mphosph8	chr14	protein_coding	M-phase phosphoprotein 8
novel_NIR_6073	chr14	56936831	56938277	-	56936763	56938277	A3SS	ENSMUST00000180682.2	novel	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	10	0	10	0	y	0.50	1	1	1	1	n	1.00	5	0	5	0	y	1.00	3	0	3	0	y	0.67	2	1	2	1	y	1.00	5	0	5	0	y	1.00	1	0	1	0	n	0.67	2	1	2	1	y	0.75	3	1	3	1	y	1.00	3	0	3	0	y	ENSMUSG00000097743.2	Gm16973	chr14	lncRNA	predicted gene, 16973
novel_NIR_6074	chr14	57042083	57048197	-	57042320	57048197	A3SS	ENSMUST00000173954.3	novel	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.22	2	7	2	7	y	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	ENSMUSG00000040123.18	Zmym5	chr14	protein_coding	zinc finger, MYM-type 5
novel_NIR_6075	chr14	57042320	57043377	-	57042320	57047998	A5SS	ENSMUST00000039812.16	novel	1.00	23	0	23	0	y	1.00	14	0	14	0	y	1.00	14	0	14	0	n	1.00	28	0	28	0	n	0.97	29	1	29	1	n	1.00	5	0	5	0	y	1.00	23	0	23	0	n	1.00	15	0	15	0	y	1.00	15	0	15	0	y	1.00	22	0	22	0	y	0.93	14	1	14	1	n	1.00	24	0	24	0	y	ENSMUSG00000040123.18	Zmym5	chr14	protein_coding	zinc finger, MYM-type 5
novel_NIR_6076	chr14	57042320	57043377	-	57042320	57048197	A5SS	ENSMUST00000173954.3	novel	0.92	23	2	23	2	y	0.67	14	7	14	7	n	0.52	14	13	14	13	y	0.74	28	10	28	10	n	0.81	29	7	29	7	y	0.71	5	2	5	2	y	0.79	23	6	23	6	y	0.83	15	3	15	3	n	0.62	15	9	15	9	n	0.65	22	12	22	12	n	0.93	14	1	14	1	n	0.71	24	10	24	10	n	ENSMUSG00000040123.18	Zmym5	chr14	protein_coding	zinc finger, MYM-type 5
novel_NIR_6077	chr14	57042320	57043377	-	57042320	57049049	A5SS	ENSMUST00000225699.2	novel	0.96	23	1	23	1	y	1.00	14	0	14	0	y	0.88	14	2	14	2	y	0.90	28	3	28	3	y	1.00	29	0	29	0	y	0.83	5	1	5	1	y	0.92	23	2	23	2	y	0.88	15	2	15	2	y	0.88	15	2	15	2	y	0.96	22	1	22	1	y	1.00	14	0	14	0	y	0.86	24	4	24	4	y	ENSMUSG00000040123.18	Zmym5	chr14	protein_coding	zinc finger, MYM-type 5
novel_NIR_6078	chr14	57042320	57046861	-	57042320	57047998	A5SS	ENSMUST00000039812.16	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000040123.18	Zmym5	chr14	protein_coding	zinc finger, MYM-type 5
novel_NIR_6079	chr14	57042320	57046861	-	57042320	57048197	A5SS	ENSMUST00000173954.3	novel	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.33	1	2	1	2	n	0.33	3	6	3	6	y	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	ENSMUSG00000040123.18	Zmym5	chr14	protein_coding	zinc finger, MYM-type 5
novel_NIR_6080	chr14	57042320	57046861	-	57042320	57049049	A5SS	ENSMUST00000225699.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.60	3	2	3	2	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000040123.18	Zmym5	chr14	protein_coding	zinc finger, MYM-type 5
novel_NIR_6081	chr14	57042320;57043438	57043377;57047998	-	57042320	57047998	cassetteExon	ENSMUST00000039812.16	novel	1.00	11.5	0	23;0	0	n	1.00	7.0	0	14;0	0	n	1.00	8.0	0	14;2	0	y	1.00	15.5	0	28;3	0	y	0.94	15.0	1	29;1	1	n	1.00	2.5	0	5;0	0	n	1.00	11.5	0	23;0	0	n	1.00	7.5	0	15;0	0	n	1.00	7.5	0	15;0	0	n	1.00	11.0	0	22;0	0	n	0.88	7.0	1	14;0	1	n	1.00	12.0	0	24;0	0	n	ENSMUSG00000040123.18	Zmym5	chr14	protein_coding	zinc finger, MYM-type 5
novel_NIR_6082	chr14	57042320;57043438	57043377;57048197	-	57042320	57048197	cassetteExon	ENSMUST00000173954.3	novel	0.85	11.5	2	23;0	2	n	0.50	7.0	7	14;0	7	n	0.35	7.0	13	14;0	13	n	0.61	15.5	10	28;3	10	y	0.67	14.5	7	29;0	7	n	0.56	2.5	2	5;0	2	n	0.66	11.5	6	23;0	6	n	0.71	7.5	3	15;0	3	n	0.47	8.0	9	15;1	9	n	0.48	11.0	12	22;0	12	n	0.89	8.0	1	14;2	1	y	0.55	12.0	10	24;0	10	n	ENSMUSG00000040123.18	Zmym5	chr14	protein_coding	zinc finger, MYM-type 5
novel_NIR_6083	chr14	57048053	57048197	-	57042320	57048197	A3SS	ENSMUST00000173954.3	novel	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.09	1	10	1	10	n	0.30	3	7	3	7	y	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.14	2	12	2	12	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	ENSMUSG00000040123.18	Zmym5	chr14	protein_coding	zinc finger, MYM-type 5
novel_NIR_6084	chr14	57048053	57048197	-	57048053	57049049	A5SS	ENSMUST00000039812.16	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040123.18	Zmym5	chr14	protein_coding	zinc finger, MYM-type 5
novel_NIR_6085	chr14	57124413	57125252	+	57124155	57125252	A5SS	ENSMUST00000223669.2	novel	1.00	6	0	6	0	y	1.00	2	0	2	0	y	1.00	17	0	17	0	y	1.00	17	0	17	0	y	0.80	8	2	8	2	y	0.92	12	1	12	1	y	0.92	12	1	12	1	y	1.00	12	0	12	0	y	1.00	7	0	7	0	y	1.00	12	0	12	0	y	1.00	8	0	8	0	y	0.87	13	2	13	2	y	ENSMUSG00000021945.10	Zmym2	chr14	protein_coding	zinc finger, MYM-type 2
novel_NIR_6086	chr14	57182220	57183948	+	57182216	57183948	A5SS	ENSMUST00000225282.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	1	0	1	0	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	ENSMUSG00000021945.10	Zmym2	chr14	protein_coding	zinc finger, MYM-type 2
novel_NIR_6087	chr14	57550586	57576687	-	57550586	57590093	A5SS	ENSMUST00000223986.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.67	2	1	2	1	y	ENSMUSG00000021947.12	Cryl1	chr14	protein_coding	crystallin, lambda 1
novel_NIR_6088	chr14	57550586	57579638	-	57550586	57590093	A5SS	ENSMUST00000223986.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	ENSMUSG00000021947.12	Cryl1	chr14	protein_coding	crystallin, lambda 1
novel_NIR_6089	chr14	57600505	57600847	-	57600505	57635865	A5SS	ENSMUST00000224292.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000021947.12	Cryl1	chr14	protein_coding	crystallin, lambda 1
novel_NIR_6090	chr14	57600505	57613388	-	57600505	57635865	A5SS	ENSMUST00000224292.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	4	0	4	0	y	ENSMUSG00000021947.12	Cryl1	chr14	protein_coding	crystallin, lambda 1
novel_NIR_6091	chr14	57600505	57613483	-	57600505	57620215	A5SS	ENSMUST00000022517.9	novel	0.11	4	31	4	31	n	0.18	6	28	6	28	y	0.12	2	14	2	14	n	0.16	6	32	6	32	y	0.00	0	42	0	42	n	0.00	0	8	0	8	n	0.12	7	53	7	53	n	0.07	1	13	1	13	n	0.05	2	40	2	40	n	0.24	21	65	21	65	y	0.18	13	58	13	58	y	0.37	28	48	28	48	y	ENSMUSG00000021947.12	Cryl1	chr14	protein_coding	crystallin, lambda 1
novel_NIR_6092	chr14	57600505	57613483	-	57600505	57635865	A5SS	ENSMUST00000224292.2	novel	1.00	4	0	4	0	y	1.00	6	0	6	0	y	1.00	2	0	2	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	7	0	7	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	21	0	21	0	y	1.00	13	0	13	0	y	1.00	28	0	28	0	y	ENSMUSG00000021947.12	Cryl1	chr14	protein_coding	crystallin, lambda 1
novel_NIR_6093	chr14	57620322	57624749	-	57620322	57635865	A5SS	ENSMUST00000022517.9	novel	0.00	0	23	0	23	n	0.00	0	25	0	25	n	0.08	1	12	1	12	n	0.02	1	48	1	48	n	0.07	2	25	2	25	n	0.20	2	8	2	8	y	0.03	1	28	1	28	n	0.00	0	8	0	8	n	0.03	1	28	1	28	n	0.00	0	40	0	40	n	0.00	0	41	0	41	n	0.02	1	42	1	42	n	ENSMUSG00000021947.12	Cryl1	chr14	protein_coding	crystallin, lambda 1
novel_NIR_6094	chr14	57930075	57931771	-	57929227	57931771	A3SS	ENSMUST00000022531.14	novel	0.12	1	7	1	7	n	0.00	0	6	0	6	n	0.00	0	18	0	18	n	0.00	0	16	0	16	n	0.00	0	23	0	23	n	0.12	1	7	1	7	n	0.15	3	17	3	17	y	0.00	0	10	0	10	n	0.14	3	18	3	18	n	0.00	0	17	0	17	n	0.00	0	7	0	7	n	0.21	4	15	4	15	y	ENSMUSG00000021959.17	Lats2	chr14	protein_coding	large tumor suppressor 2
novel_NIR_6095	chr14	58036054	58038017	+	58036054	58042215	A3SS	ENSMUST00000111269.2	novel	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.25	1	3	1	3	n	0.50	1	1	1	1	n	1.00	3	0	3	0	y	ENSMUSG00000021963.18	Sap18	chr14	protein_coding	Sin3-associated polypeptide 18
novel_NIR_6096	chr14	58036054	58038670	+	58036054	58042215	A3SS	ENSMUST00000111269.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000021963.18	Sap18	chr14	protein_coding	Sin3-associated polypeptide 18
novel_NIR_6097	chr14	58036054;58039570	58039379;58042215	+	58036054	58042215	cassetteExon	ENSMUST00000111269.2	novel	0.00	0.0	1	0;0	1	n	0.84	10.5	2	1;20	2	n	0.00	0.0	2	0;0	2	n	-	-	-	-	-	-	0.33	0.5	1	0;1	1	n	0.00	0.0	1	0;0	1	n	1.00	1.5	0	0;3	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1.5	3	0;3	3	n	0.33	0.5	1	0;1	1	n	1.00	4.0	0	2;6	0	y	ENSMUSG00000021963.18	Sap18	chr14	protein_coding	Sin3-associated polypeptide 18
novel_NIR_6098	chr14	58038130	58038951	+	58036217	58038951	A5SS	ENSMUST00000111267.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021963.18	Sap18	chr14	protein_coding	Sin3-associated polypeptide 18
novel_NIR_6099	chr14	58038130	58038951	+	58036221	58038951	A5SS	ENSMUST00000111268.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021963.18	Sap18	chr14	protein_coding	Sin3-associated polypeptide 18
novel_NIR_6100	chr14	58039555	58042215	+	58036054	58042215	A5SS	ENSMUST00000111269.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000021963.18	Sap18	chr14	protein_coding	Sin3-associated polypeptide 18
novel_NIR_6101	chr14	58039570	58042215	+	58036054	58042215	A5SS	ENSMUST00000111269.2	novel	0.00	0	1	0	1	n	0.91	20	2	20	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.50	3	3	3	3	y	0.50	1	1	1	1	n	1.00	6	0	6	0	n	ENSMUSG00000021963.18	Sap18	chr14	protein_coding	Sin3-associated polypeptide 18
novel_NIR_6102	chr14	58074103	58078286	-	58074103	58076547	5pMXE	ENSMUST00000226029.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	ENSMUSG00000021969.9	Zdhhc20	chr14	protein_coding	zinc finger, DHHC domain containing 20
novel_NIR_6103	chr14	58084519	58084645	-	58084519	58087602	A5SS	ENSMUST00000226057.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021969.9	Zdhhc20	chr14	protein_coding	zinc finger, DHHC domain containing 20
novel_NIR_6104	chr14	59439033	59444253	+	59439033	59443074	A3SS&ES	ENSMUST00000174009.8	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.20	3	12	3	12	y	0.16	3	16	3	16	y	0.00	0	17	0	17	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.25	2	6	2	6	y	0.00	0	21	0	21	n	ENSMUSG00000035469.18	Rcbtb1	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
novel_NIR_6105	chr14	59439033	59444253	+	59439033	59447192	A3SS	ENSMUST00000022551.14	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.38	3	5	3	5	n	1.00	3	0	3	0	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000035469.18	Rcbtb1	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
novel_NIR_6106	chr14	59439033	59444253	+	59439033;59443171	59443074;59444253	ES	ENSMUST00000142326.2	novel	0.00	0	1.5	0	3;0	n	0.00	0	2.5	0	4;1	n	0.27	3	8.0	3	12;4	y	0.22	3	10.5	3	16;5	y	0.00	0	12.5	0	17;8	n	0.00	0	4.5	0	7;2	n	0.00	0	8.0	0	9;7	n	0.00	0	8.5	0	13;4	n	0.00	0	4.0	0	8;0	n	0.00	0	7.5	0	10;5	n	0.40	2	3.0	2	6;0	y	0.00	0	14.5	0	21;8	n	ENSMUSG00000035469.18	Rcbtb1	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
novel_NIR_6107	chr14	59439033	59447466	+	59439033	59443074	A3SS&ES	ENSMUST00000142326.2	novel	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.29	5	12	5	12	y	0.00	0	16	0	16	n	0.15	3	17	3	17	y	0.12	1	7	1	7	n	0.00	0	9	0	9	n	0.07	1	13	1	13	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.25	2	6	2	6	y	0.00	0	21	0	21	n	ENSMUSG00000035469.18	Rcbtb1	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
novel_NIR_6108	chr14	59439033	59447466	+	59439033	59447192	A3SS&ES	ENSMUST00000022551.14	novel	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.50	5	5	5	5	y	-	-	-	-	-	-	0.50	3	3	3	3	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000035469.18	Rcbtb1	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
novel_NIR_6109	chr14	59439033	59447466	+	59439033;59443171	59443074;59447466	ES	ENSMUST00000174009.8	novel	0.40	1	1.5	1	3;0	n	0.00	0	2.0	0	4;0	n	0.45	5	6.0	5	12;0	y	0.00	0	8.0	0	16;0	n	0.25	3	9.0	3	17;1	y	0.20	1	4.0	1	7;1	n	0.00	0	5.0	0	9;1	n	0.13	1	6.5	1	13;0	n	0.00	0	4.5	0	8;1	n	0.00	0	5.0	0	10;0	n	0.40	2	3.0	2	6;0	y	0.00	0	12.0	0	21;3	n	ENSMUSG00000035469.18	Rcbtb1	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
novel_NIR_6110	chr14	59439033	59447466	+	59443171	59447466	5pMXE	ENSMUST00000172810.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	0.75	3	1	3	1	y	0.50	1	1	1	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	3	0	3	n	ENSMUSG00000035469.18	Rcbtb1	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
novel_NIR_6111	chr14	59443171	59447192	+	59439033	59447192	A5SS	ENSMUST00000022551.14	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035469.18	Rcbtb1	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
novel_NIR_6112	chr14	59443171	59447192	+	59443171	59444213	A3SS&ES	ENSMUST00000140136.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035469.18	Rcbtb1	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
novel_NIR_6113	chr14	59443171	59447192	+	59443171	59444253	A3SS&ES	ENSMUST00000142326.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.20	2	8	2	8	y	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	8	0	8	n	ENSMUSG00000035469.18	Rcbtb1	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
novel_NIR_6114	chr14	59443171	59447192	+	59443171	59447466	A3SS	ENSMUST00000174009.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000035469.18	Rcbtb1	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
novel_NIR_6115	chr14	59443171	59447377	+	59443171	59444213	A3SS&ES	ENSMUST00000140136.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	5	0	5	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035469.18	Rcbtb1	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
novel_NIR_6116	chr14	59443171	59447377	+	59443171	59447466	A3SS	ENSMUST00000174009.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.50	1	1	1	1	n	0.00	0	1	0	1	n	1.00	5	0	5	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000035469.18	Rcbtb1	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
novel_NIR_6117	chr14	59443171	59447377	+	59443171;59444379	59444253;59447377	ES	ENSMUST00000142326.2	novel	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	0.00	0	3.0	0	4;2	n	0.00	0	3.0	0	5;1	n	0.29	2	5.0	2	8;2	y	0.40	1	1.5	1	2;1	n	0.00	0	3.5	0	7;0	n	0.67	5	2.5	5	4;1	y	0.00	0	1.0	0	0;2	n	0.00	0	2.5	0	5;0	n	-	-	-	-	-	-	0.00	0	4.0	0	8;0	n	ENSMUSG00000035469.18	Rcbtb1	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
novel_NIR_6118	chr14	59443196	59447377	+	59444379	59447377	A5SS&ES	ENSMUST00000142326.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	5	0	5	0	y	0.00	0	1	0	1	n	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000035469.18	Rcbtb1	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
novel_NIR_6119	chr14	59444379	59447466	+	59443171	59447466	A5SS	ENSMUST00000174009.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000035469.18	Rcbtb1	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
novel_NIR_6120	chr14	59444379	59447466	+	59444379	59447374	3pMXE	ENSMUST00000140136.9	novel	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.23	3	10	3	10	y	0.00	0	4	0	4	n	0.00	0	12	0	12	n	ENSMUSG00000035469.18	Rcbtb1	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
novel_NIR_6121	chr14	59444379	59447466	+	59444379	59447377	A3SS	ENSMUST00000142326.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035469.18	Rcbtb1	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
novel_NIR_6122	chr14	59459222	59460642	+	59455211	59460642	A5SS	ENSMUST00000174830.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000035469.18	Rcbtb1	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
novel_NIR_6123	chr14	59599304	59618767	-	59599304	59602816	5pMXE	ENSMUST00000095157.11	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.25	3	9	3	9	y	0.25	1	3	1	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	2	0	2	n	ENSMUSG00000068245.15	Phf11d	chr14	protein_coding	PHD finger protein 11D
novel_NIR_6124	chr14	59599304	59618767	-	59618596	59618767	3pMXE	ENSMUST00000166912.3	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	3	0	3	0	y	0.50	1	1	1	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	ENSMUSG00000091144.3	Phf11c	chr14	protein_coding	PHD finger protein 11C
novel_NIR_6125	chr14	59624845	59626740	-	59624845	59626718	A5SS	ENSMUST00000166912.3	novel	0.56	14	11	14	11	y	0.37	10	17	10	17	y	0.33	7	14	7	14	y	0.28	11	28	11	28	y	0.30	8	19	8	19	y	0.00	0	6	0	6	n	0.29	6	15	6	15	y	0.16	3	16	3	16	y	0.25	7	21	7	21	y	0.17	3	15	3	15	y	0.42	11	15	11	15	y	0.23	3	10	3	10	y	ENSMUSG00000091144.3	Phf11c	chr14	protein_coding	PHD finger protein 11C
novel_NIR_6126	chr14	59638583	59644095	-	59639865	59644095	3pMXE	ENSMUST00000161459.8	novel	0.16	5	26	5	26	y	0.00	0	10	0	10	n	0.02	1	44	1	44	n	0.21	7	27	7	27	y	0.16	7	37	7	37	y	0.00	0	21	0	21	n	0.09	5	48	5	48	n	0.00	0	15	0	15	n	0.07	3	41	3	41	n	0.14	8	49	8	49	n	0.05	2	36	2	36	n	0.06	2	31	2	31	n	ENSMUSG00000071350.13	Setdb2	chr14	protein_coding	SET domain, bifurcated 2
novel_NIR_6127	chr14	59660933	59668592	-	59660933;59664003	59663938;59668592	ES	ENSMUST00000161459.8	novel	0.17	4	20.0	4	20;20	y	0.00	0	15.0	0	18;12	n	0.00	0	46.0	0	47;45	n	0.00	0	29.0	0	30;28	n	0.00	0	47.5	0	46;49	n	0.00	0	18.0	0	18;18	n	0.00	0	28.5	0	34;23	n	0.05	1	20.5	1	17;24	n	0.00	0	28.5	0	27;30	n	0.11	4	33.5	4	34;33	n	0.04	1	25.0	1	26;24	n	0.00	0	37.5	0	38;37	n	ENSMUSG00000071350.13	Setdb2	chr14	protein_coding	SET domain, bifurcated 2
novel_NIR_6128	chr14	59678471	59696543	+	59678471;59681779	59681646;59696543	ES	ENSMUST00000225149.2	novel	1.00	2	0.0	2	0;0	y	1.00	3	0.0	3	0;0	y	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	1.00	2	0.0	2	0;0	y	1.00	1	0.0	1	0;0	n	1.00	4	0.0	4	0;0	y	1.00	2	0.0	2	0;0	y	1.00	1	0.0	1	0;0	n	1.00	1	0.0	1	0;0	n	1.00	1	0.0	1	0;0	n	1.00	5	0.0	5	0;0	y	ENSMUSG00000021981.11	Cab39l	chr14	protein_coding	calcium binding protein 39-like
novel_NIR_6129	chr14	59715522	59734252	+	59715522;59716633	59716493;59734252	ES	ENSMUST00000223678.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1.0	0	2;0	n	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	0.00	0	0.5	0	0;1	n	0.00	0	0.5	0	1;0	n	0.00	0	1.5	0	1;2	n	0.67	2	1.0	2	0;2	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021981.11	Cab39l	chr14	protein_coding	calcium binding protein 39-like
novel_NIR_6130	chr14	59715522	59734252	+	59716633	59734252	5pMXE	ENSMUST00000224893.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021981.11	Cab39l	chr14	protein_coding	calcium binding protein 39-like
novel_NIR_6131	chr14	59801854	59801967	-	59798370	59801967	A3SS	ENSMUST00000225839.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.80	4	1	4	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021982.15	Cdadc1	chr14	protein_coding	cytidine and dCMP deaminase domain containing 1
novel_NIR_6132	chr14	59805468	59806397	-	59798370	59806397	A3SS	ENSMUST00000022555.11	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000021982.15	Cdadc1	chr14	protein_coding	cytidine and dCMP deaminase domain containing 1
novel_NIR_6133	chr14	59805468	59806397	-	59798405	59806397	A3SS	ENSMUST00000167100.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021982.15	Cdadc1	chr14	protein_coding	cytidine and dCMP deaminase domain containing 1
novel_NIR_6134	chr14	59805468	59806397	-	59805487	59806397	A3SS	ENSMUST00000171683.3	novel	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.29	2	5	2	5	y	0.00	0	1	0	1	n	0.12	1	7	1	7	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	ENSMUSG00000021982.15	Cdadc1	chr14	protein_coding	cytidine and dCMP deaminase domain containing 1
novel_NIR_6135	chr14	59806230	59806397	-	59798370	59806397	A3SS	ENSMUST00000022555.11	novel	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.67	4	2	4	2	y	-	-	-	-	-	-	0.57	4	3	4	3	y	-	-	-	-	-	-	0.50	3	3	3	3	y	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000021982.15	Cdadc1	chr14	protein_coding	cytidine and dCMP deaminase domain containing 1
novel_NIR_6136	chr14	59806230	59806397	-	59798405	59806397	A3SS	ENSMUST00000167100.9	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021982.15	Cdadc1	chr14	protein_coding	cytidine and dCMP deaminase domain containing 1
novel_NIR_6137	chr14	59806230	59806397	-	59805487	59806397	A3SS	ENSMUST00000171683.3	novel	0.10	1	9	1	9	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.08	1	12	1	12	n	0.44	4	5	4	5	y	0.00	0	1	0	1	n	0.36	4	7	4	7	y	0.00	0	4	0	4	n	0.33	3	6	3	6	n	0.09	1	10	1	10	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	ENSMUSG00000021982.15	Cdadc1	chr14	protein_coding	cytidine and dCMP deaminase domain containing 1
novel_NIR_6138	chr14	60448903	60459032	-	60424200	60459032	A3SS	ENSMUST00000225805.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000063895.8	Nupl1	chr14	protein_coding	nucleoporin like 1
novel_NIR_6139	chr14	60448903	60459032	-	60443401	60459032	A3SS	ENSMUST00000225311.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000114797.2	Gm49336	chr14	protein_coding	predicted gene, 49336
novel_NIR_6140	chr14	60459127	60460817	-	60459127	60460766	A5SS	ENSMUST00000225805.2	novel	0.04	1	22	1	22	n	0.05	1	19	1	19	n	0.07	2	27	2	27	n	0.27	4	11	4	11	y	0.07	2	26	2	26	n	0.00	0	14	0	14	n	0.03	1	29	1	29	n	0.12	1	7	1	7	n	0.07	1	13	1	13	n	0.00	0	24	0	24	n	0.00	0	15	0	15	n	0.00	0	13	0	13	n	ENSMUSG00000063895.8	Nupl1	chr14	protein_coding	nucleoporin like 1
novel_NIR_6141	chr14	60871670	60928303	+	60871632	60928303	A5SS	ENSMUST00000159169.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021990.17	Spata13	chr14	protein_coding	spermatogenesis associated 13
novel_NIR_6142	chr14	60871670	60928303	+	60871784	60928303	5pMXE	ENSMUST00000160973.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021990.17	Spata13	chr14	protein_coding	spermatogenesis associated 13
novel_NIR_6143	chr14	60871670	60928303	+	60872313	60928303	5pMXE	ENSMUST00000022566.14	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.00	0	14	0	14	n	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000021990.17	Spata13	chr14	protein_coding	spermatogenesis associated 13
novel_NIR_6144	chr14	60949166	60983094	+	60970655	60983094	5pMXE	ENSMUST00000162945.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	ENSMUSG00000021990.17	Spata13	chr14	protein_coding	spermatogenesis associated 13
novel_NIR_6145	chr14	6103606	6103749	+	6103606	6132789	A3SS	ENSMUST00000225819.2	novel	0.25	2	6	2	6	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	ENSMUSG00000114243.2	Gm48163	chr14	lncRNA	predicted gene, 48163
novel_NIR_6146	chr14	6103606	6131311	+	6103606	6132789	A3SS	ENSMUST00000225819.2	novel	0.14	1	6	1	6	n	0.44	4	5	4	5	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.38	6	10	6	10	y	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.62	5	3	5	3	n	0.08	1	12	1	12	n	ENSMUSG00000114243.2	Gm48163	chr14	lncRNA	predicted gene, 48163
novel_NIR_6147	chr14	6103606;6131364	6131311;6132789	+	6103606	6132789	cassetteExon	ENSMUST00000225819.2	novel	0.29	2.5	6	1;4	6	n	0.47	4.5	5	4;5	5	y	0.00	0.0	2	0;0	2	n	0.14	0.5	3	1;0	3	n	0.18	2.0	9	0;4	9	n	-	-	-	-	-	-	0.23	3.0	10	6;0	10	n	0.00	0.0	3	0;0	3	n	0.00	0.0	10	0;0	10	n	0.16	1.5	8	0;3	8	n	0.62	5.0	3	5;5	3	y	0.04	0.5	12	1;0	12	n	ENSMUSG00000114243.2	Gm48163	chr14	lncRNA	predicted gene, 48163
novel_NIR_6148	chr14	61083952	61087689	+	61083952	61101259	A3SS	ENSMUST00000223709.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000021993.11	Mipep	chr14	protein_coding	mitochondrial intermediate peptidase
novel_NIR_6149	chr14	6131364	6132789	+	6103606	6132789	A5SS	ENSMUST00000225819.2	novel	0.40	4	6	4	6	n	0.50	5	5	5	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.31	4	9	4	9	y	-	-	-	-	-	-	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.27	3	8	3	8	y	0.62	5	3	5	3	n	0.00	0	12	0	12	n	ENSMUSG00000114243.2	Gm48163	chr14	lncRNA	predicted gene, 48163
novel_NIR_6150	chr14	61547386	61551493	+	61547386	61548089	3pMXE	ENSMUST00000055159.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000043157.9	Arl11	chr14	protein_coding	ADP-ribosylation factor-like 11
novel_NIR_6151	chr14	61593165	61597669	-	61579675	61597669	A3SS	ENSMUST00000223560.2	novel	0.44	4	5	4	5	y	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.60	3	2	3	2	y	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.09	1	10	1	10	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	ENSMUSG00000021928.10	Ebpl	chr14	protein_coding	emopamil binding protein-like
novel_NIR_6152	chr14	61841232	61861882	-	61841255	61861882	A3SS	ENSMUST00000183066.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	3	3	3	3	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	ENSMUSG00000097589.10	Dleu2	chr14	lncRNA	deleted in lymphocytic leukemia, 2
novel_NIR_6153	chr14	61841232	61861882	-	61857467	61861882	3pMXE	ENSMUST00000180377.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000097589.10	Dleu2	chr14	lncRNA	deleted in lymphocytic leukemia, 2
novel_NIR_6154	chr14	61841232	61869886	-	61861931	61869886	A3SS&ES	ENSMUST00000183066.8	novel	0.75	3	1	3	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.14	1	6	1	6	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000097589.10	Dleu2	chr14	lncRNA	deleted in lymphocytic leukemia, 2
novel_NIR_6155	chr14	61841232	61869886	-	61862811	61869886	A3SS&ES	ENSMUST00000182259.8	novel	0.50	3	3	3	3	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000097589.10	Dleu2	chr14	lncRNA	deleted in lymphocytic leukemia, 2
novel_NIR_6156	chr14	61841232	61869886	-	61866265	61869886	3pMXE	ENSMUST00000183245.8	novel	0.50	3	3	3	3	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	ENSMUSG00000097589.10	Dleu2	chr14	lncRNA	deleted in lymphocytic leukemia, 2
novel_NIR_6157	chr14	61841232	61872974	-	61841255	61872974	A3SS	ENSMUST00000183054.8	novel	0.00	0	3	0	3	n	0.17	1	5	1	5	n	-	-	-	-	-	-	0.20	1	4	1	4	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.33	2	4	2	4	y	ENSMUSG00000097589.10	Dleu2	chr14	lncRNA	deleted in lymphocytic leukemia, 2
novel_NIR_6158	chr14	61841255	61845443	-	61841255	61851615	A5SS	ENSMUST00000182259.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.33	1	2	1	2	n	ENSMUSG00000097589.10	Dleu2	chr14	lncRNA	deleted in lymphocytic leukemia, 2
novel_NIR_6159	chr14	61841255	61845443	-	61841255	61861882	A5SS	ENSMUST00000183066.8	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	ENSMUSG00000097589.10	Dleu2	chr14	lncRNA	deleted in lymphocytic leukemia, 2
novel_NIR_6160	chr14	61841255	61845443	-	61841255	61872974	A5SS	ENSMUST00000183054.8	novel	0.00	0	3	0	3	n	0.17	1	5	1	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.20	1	4	1	4	n	ENSMUSG00000097589.10	Dleu2	chr14	lncRNA	deleted in lymphocytic leukemia, 2
novel_NIR_6161	chr14	61841255	61857238	-	61841255	61851615	A5SS&ES	ENSMUST00000182259.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000097589.10	Dleu2	chr14	lncRNA	deleted in lymphocytic leukemia, 2
novel_NIR_6162	chr14	61841255	61857238	-	61841255	61861882	A5SS	ENSMUST00000183066.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.33	2	4	2	4	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	ENSMUSG00000097589.10	Dleu2	chr14	lncRNA	deleted in lymphocytic leukemia, 2
novel_NIR_6163	chr14	61841255	61857238	-	61841255	61872974	A5SS	ENSMUST00000183054.8	novel	0.00	0	3	0	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000097589.10	Dleu2	chr14	lncRNA	deleted in lymphocytic leukemia, 2
novel_NIR_6164	chr14	61841255	61862669	-	61841255	61861882	A5SS&ES	ENSMUST00000183066.8	novel	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.67	4	2	4	2	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.43	3	4	3	4	y	0.33	2	4	2	4	y	0.38	3	5	3	5	y	ENSMUSG00000097589.10	Dleu2	chr14	lncRNA	deleted in lymphocytic leukemia, 2
novel_NIR_6165	chr14	61841255	61862669	-	61841255	61869886	A5SS	ENSMUST00000182768.8	novel	0.05	1	19	1	19	n	0.04	1	23	1	23	n	0.00	0	3	0	3	n	0.06	1	17	1	17	n	0.19	4	17	4	17	y	0.00	0	5	0	5	n	0.00	0	19	0	19	n	0.00	0	5	0	5	n	0.06	1	15	1	15	n	0.12	3	23	3	23	n	0.17	2	10	2	10	y	0.12	3	23	3	23	n	ENSMUSG00000097589.10	Dleu2	chr14	lncRNA	deleted in lymphocytic leukemia, 2
novel_NIR_6166	chr14	61841255	61862669	-	61841255	61872974	A5SS	ENSMUST00000183054.8	novel	0.25	1	3	1	3	n	0.17	1	5	1	5	n	-	-	-	-	-	-	0.20	1	4	1	4	n	0.44	4	5	4	5	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.50	3	3	3	3	y	0.40	2	3	2	3	y	0.43	3	4	3	4	y	ENSMUSG00000097589.10	Dleu2	chr14	lncRNA	deleted in lymphocytic leukemia, 2
novel_NIR_6167	chr14	61841255	61862669	-	61841255;61851720	61851615;61862669	ES	ENSMUST00000182259.8	novel	1.00	1	0.0	1	0;0	n	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	0.89	4	0.5	4	1;0	y	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	1.00	1	0.0	1	0;0	n	0.55	3	2.5	3	4;1	y	0.67	2	1.0	2	0;2	y	0.75	3	1.0	3	2;0	y	ENSMUSG00000097589.10	Dleu2	chr14	lncRNA	deleted in lymphocytic leukemia, 2
novel_NIR_6168	chr14	61851720	61857238	-	61851720	61862669	A5SS	ENSMUST00000182259.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000097589.10	Dleu2	chr14	lncRNA	deleted in lymphocytic leukemia, 2
novel_NIR_6169	chr14	61857471	61861882	-	61841255	61861882	A3SS	ENSMUST00000183066.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.29	2	5	2	5	y	ENSMUSG00000097589.10	Dleu2	chr14	lncRNA	deleted in lymphocytic leukemia, 2
novel_NIR_6170	chr14	61857471	61861882	-	61857467	61861882	A3SS	ENSMUST00000180377.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000097589.10	Dleu2	chr14	lncRNA	deleted in lymphocytic leukemia, 2
novel_NIR_6171	chr14	61867540	61869886	-	61861931	61869886	A3SS	ENSMUST00000183066.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000097589.10	Dleu2	chr14	lncRNA	deleted in lymphocytic leukemia, 2
novel_NIR_6172	chr14	61867540	61869886	-	61862811	61869886	A3SS	ENSMUST00000182259.8	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000097589.10	Dleu2	chr14	lncRNA	deleted in lymphocytic leukemia, 2
novel_NIR_6173	chr14	61867540	61869886	-	61866265	61869886	A3SS	ENSMUST00000183245.8	novel	0.00	0	3	0	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	ENSMUSG00000097589.10	Dleu2	chr14	lncRNA	deleted in lymphocytic leukemia, 2
novel_NIR_6174	chr14	61880904	61914961	-	61880904	61881413	A5SS&ES	ENSMUST00000182957.2	novel	0.50	3	3	3	3	y	0.60	3	2	3	2	y	-	-	-	-	-	-	0.75	3	1	3	1	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	4	4	4	4	y	0.25	1	3	1	3	n	1.00	7	0	7	0	y	1.00	1	0	1	0	n	ENSMUSG00000097589.10	Dleu2	chr14	lncRNA	deleted in lymphocytic leukemia, 2
novel_NIR_6175	chr14	61880904	61914961	-	61880904	61885931	5pMXE	ENSMUST00000183054.8	novel	1.00	3	0	3	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	7	0	7	0	y	1.00	1	0	1	0	n	ENSMUSG00000097589.10	Dleu2	chr14	lncRNA	deleted in lymphocytic leukemia, 2
novel_NIR_6176	chr14	61880904	61914961	-	61880904	61886067	5pMXE	ENSMUST00000182325.8	novel	1.00	3	0	3	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	7	0	7	0	y	1.00	1	0	1	0	n	ENSMUSG00000097589.10	Dleu2	chr14	lncRNA	deleted in lymphocytic leukemia, 2
novel_NIR_6177	chr14	61880904	61914961	-	61880904	61919559	A5SS	ENSMUST00000182768.8	novel	0.09	3	29	3	29	n	0.09	3	32	3	32	n	0.00	0	9	0	9	n	0.12	3	22	3	22	n	0.05	2	36	2	36	n	0.00	0	12	0	12	n	0.00	0	41	0	41	n	0.00	0	9	0	9	n	0.20	4	16	4	16	y	0.02	1	40	1	40	n	0.21	7	26	7	26	y	0.03	1	39	1	39	n	ENSMUSG00000097589.10	Dleu2	chr14	lncRNA	deleted in lymphocytic leukemia, 2
novel_NIR_6178	chr14	6225806	6226965	+	6220286	6226965	A5SS	ENSMUST00000022311.12	novel	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.29	2	5	2	5	y	ENSMUSG00000021786.14	Oxsm	chr14	protein_coding	3-oxoacyl-ACP synthase, mitochondrial
novel_NIR_6179	chr14	6225806	6226965	+	6220641	6226965	A5SS	ENSMUST00000112624.3	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000021786.14	Oxsm	chr14	protein_coding	3-oxoacyl-ACP synthase, mitochondrial
novel_NIR_6180	chr14	6225806	6226965	+	6226473	6226965	5pMXE	ENSMUST00000112625.9	novel	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.00	0	25	0	25	n	0.00	0	34	0	34	n	0.00	0	31	0	31	n	0.00	0	12	0	12	n	0.00	0	20	0	20	n	0.00	0	19	0	19	n	0.00	0	15	0	15	n	0.00	0	17	0	17	n	0.00	0	8	0	8	n	0.20	2	8	2	8	y	ENSMUSG00000021786.14	Oxsm	chr14	protein_coding	3-oxoacyl-ACP synthase, mitochondrial
novel_NIR_6181	chr14	6225806	6226965	+	6226746	6226965	5pMXE	ENSMUST00000148121.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	ENSMUSG00000021786.14	Oxsm	chr14	protein_coding	3-oxoacyl-ACP synthase, mitochondrial
novel_NIR_6182	chr14	62573442	62584017	+	62530103	62584017	A5SS	ENSMUST00000166879.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000021932.14	Rnaseh2b	chr14	protein_coding	ribonuclease H2, subunit B
novel_NIR_6183	chr14	62608762	62609809	+	62608001	62609809	A5SS	ENSMUST00000022499.13	novel	0.15	8	46	8	46	y	0.25	14	41	14	41	y	0.00	0	16	0	16	n	0.20	9	37	9	37	y	0.46	19	22	19	22	y	0.00	0	10	0	10	n	0.31	11	25	11	25	y	0.00	0	9	0	9	n	0.07	2	28	2	28	n	0.19	10	42	10	42	y	0.23	11	37	11	37	y	0.28	15	39	15	39	y	ENSMUSG00000021932.14	Rnaseh2b	chr14	protein_coding	ribonuclease H2, subunit B
novel_NIR_6184	chr14	62934404	62938110	-	62934404	62938080	A5SS	ENSMUST00000053959.7	novel	0.14	4	24	4	24	n	0.18	4	18	4	18	y	0.10	5	44	5	44	n	0.29	9	22	9	22	y	0.34	14	27	14	27	y	0.10	3	26	3	26	n	0.36	13	23	13	23	y	0.14	3	18	3	18	n	0.36	8	14	8	14	y	0.31	12	27	12	27	y	0.14	2	12	2	12	n	0.19	6	25	6	25	y	ENSMUSG00000035161.8	Ints6	chr14	protein_coding	integrator complex subunit 6
novel_NIR_6185	chr14	62951291	62951742	-	62951288	62951742	A3SS	ENSMUST00000053959.7	novel	0.92	12	1	12	1	y	1.00	15	0	15	0	y	0.84	32	6	32	6	y	0.86	18	3	18	3	y	0.95	37	2	37	2	y	0.67	6	3	6	3	y	0.88	28	4	28	4	y	0.84	16	3	16	3	y	1.00	18	0	18	0	y	0.97	35	1	35	1	y	1.00	16	0	16	0	y	0.96	22	1	22	1	y	ENSMUSG00000035161.8	Ints6	chr14	protein_coding	integrator complex subunit 6
novel_NIR_6186	chr14	62953931	62971077	-	62953931	62981358	A5SS	ENSMUST00000053959.7	novel	0.08	1	12	1	12	n	0.00	0	11	0	11	n	0.05	1	20	1	20	n	0.06	1	15	1	15	n	0.03	1	28	1	28	n	0.00	0	8	0	8	n	0.00	0	26	0	26	n	0.13	4	26	4	26	n	0.11	1	8	1	8	n	0.06	2	30	2	30	n	0.22	2	7	2	7	y	0.16	3	16	3	16	y	ENSMUSG00000035161.8	Ints6	chr14	protein_coding	integrator complex subunit 6
novel_NIR_6187	chr14	63394199	63400751	-	63396808	63400751	3pMXE	ENSMUST00000224267.3	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000021273.12	Fdft1	chr14	protein_coding	farnesyl diphosphate farnesyl transferase 1
novel_NIR_6188	chr14	63396846	63400751	-	63396808	63400751	A3SS	ENSMUST00000223810.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	1	1	1	1	n	1.00	3	0	3	0	y	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000021273.12	Fdft1	chr14	protein_coding	farnesyl diphosphate farnesyl transferase 1
novel_NIR_6189	chr14	63397130	63400751	-	63396808	63400751	A3SS	ENSMUST00000223810.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	4	0	4	0	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000021273.12	Fdft1	chr14	protein_coding	farnesyl diphosphate farnesyl transferase 1
novel_NIR_6190	chr14	63397130	63400751	-	63396808	63400751	A3SS	ENSMUST00000224267.3	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	4	0	4	0	y	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.50	2	2	2	2	n	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000021273.12	Fdft1	chr14	protein_coding	farnesyl diphosphate farnesyl transferase 1
novel_NIR_6191	chr14	64115637	64130172	+	64115637	64156546	A3SS	ENSMUST00000022528.6	novel	0.00	0	14	0	14	n	0.06	1	16	1	16	n	0.13	2	13	2	13	n	0.11	1	8	1	8	n	0.08	1	11	1	11	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.33	1	2	1	2	n	0.07	1	13	1	13	n	0.00	0	14	0	14	n	0.18	2	9	2	9	y	0.00	0	13	0	13	n	ENSMUSG00000021958.6	Pinx1	chr14	protein_coding	PIN2/TERF1 interacting, telomerase inhibitor 1
novel_NIR_6192	chr14	64115813	64156546	+	64137417	64156546	5pMXE	ENSMUST00000225644.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000021958.6	Pinx1	chr14	protein_coding	PIN2/TERF1 interacting, telomerase inhibitor 1
novel_NIR_6193	chr14	64130282	64156546	+	64137417	64156546	5pMXE	ENSMUST00000225644.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021958.6	Pinx1	chr14	protein_coding	PIN2/TERF1 interacting, telomerase inhibitor 1
novel_NIR_6194	chr14	64551204	64567332	-	64551204	64654347	A5SS	ENSMUST00000210428.2	novel	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	8	0	8	0	y	ENSMUSG00000054733.10	Msra	chr14	protein_coding	methionine sulfoxide reductase A
novel_NIR_6195	chr14	64551204	64567332	-	64551204	64654531	A5SS	ENSMUST00000210363.2	novel	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	8	0	8	0	y	ENSMUSG00000054733.10	Msra	chr14	protein_coding	methionine sulfoxide reductase A
novel_NIR_6196	chr14	64551204	64667300	-	64551204	64654347	5pMXE	ENSMUST00000210428.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000054733.10	Msra	chr14	protein_coding	methionine sulfoxide reductase A
novel_NIR_6197	chr14	64551204	64667300	-	64551204	64654531	5pMXE	ENSMUST00000210363.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000054733.10	Msra	chr14	protein_coding	methionine sulfoxide reductase A
novel_NIR_6198	chr14	64551204	64677320	-	64551204	64654347	5pMXE	ENSMUST00000210428.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000054733.10	Msra	chr14	protein_coding	methionine sulfoxide reductase A
novel_NIR_6199	chr14	64551204	64677320	-	64551204	64654531	5pMXE	ENSMUST00000210363.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000054733.10	Msra	chr14	protein_coding	methionine sulfoxide reductase A
novel_NIR_6200	chr14	65027147	65030095	+	65027147	65040423	A3SS	ENSMUST00000224677.2	novel	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.33	2	4	2	4	y	0.00	0	7	0	7	n	0.40	2	3	2	3	y	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	ENSMUSG00000060012.10	Kif13b	chr14	protein_coding	kinesin family member 13B
novel_NIR_6201	chr14	65054038	65054466	-	65050868	65054466	A3SS	ENSMUST00000022544.14	novel	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.50	2	2	2	2	y	0.17	3	15	3	15	y	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	15	0	15	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	19	0	19	n	0.00	0	16	0	16	n	0.00	0	14	0	14	n	ENSMUSG00000021972.15	Hmbox1	chr14	protein_coding	homeobox containing 1
novel_NIR_6202	chr14	65061147	65061903	-	65061147	65062748	A5SS	ENSMUST00000177326.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000021972.15	Hmbox1	chr14	protein_coding	homeobox containing 1
novel_NIR_6203	chr14	65061147	65061903	-	65061147	65063050	A5SS	ENSMUST00000067843.10	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	13	0	13	n	0.14	1	6	1	6	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.18	2	9	2	9	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	ENSMUSG00000021972.15	Hmbox1	chr14	protein_coding	homeobox containing 1
novel_NIR_6204	chr14	65063138	65064221	-	65063141	65064221	A3SS	ENSMUST00000067843.10	novel	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.08	1	12	1	12	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.21	3	11	3	11	y	0.07	1	14	1	14	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.30	3	7	3	7	y	0.10	1	9	1	9	n	ENSMUSG00000021972.15	Hmbox1	chr14	protein_coding	homeobox containing 1
novel_NIR_6205	chr14	65063138	65064221	-	65063144	65064221	A3SS	ENSMUST00000022544.14	novel	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.08	1	11	1	11	n	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.50	3	3	3	3	y	0.09	1	10	1	10	n	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.25	3	9	3	9	y	0.08	1	11	1	11	n	ENSMUSG00000021972.15	Hmbox1	chr14	protein_coding	homeobox containing 1
novel_NIR_6206	chr14	65187848	65217571	+	65187816	65217571	A5SS	ENSMUST00000043914.8	novel	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.00	0	17	0	17	n	0.00	0	13	0	13	n	0.20	2	8	2	8	y	0.00	0	7	0	7	n	0.00	0	17	0	17	n	0.00	0	19	0	19	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	ENSMUSG00000021975.10	Ints9	chr14	protein_coding	integrator complex subunit 9
novel_NIR_6207	chr14	65315638	65335446	-	65315638	65317829	A5SS&ES	ENSMUST00000223989.2	novel	0.11	1	8	1	8	n	0.00	0	5	0	5	n	0.33	13	27	13	27	y	0.09	2	20	2	20	n	0.28	11	28	11	28	y	0.14	5	31	5	31	n	0.22	6	21	6	21	y	0.12	3	21	3	21	n	0.00	0	7	0	7	n	0.23	5	17	5	17	y	0.08	1	11	1	11	n	0.18	2	9	2	9	y	ENSMUSG00000021978.10	Extl3	chr14	protein_coding	exostosin-like glycosyltransferase 3
novel_NIR_6208	chr14	65315638	65335446	-	65315638;65317924	65317829;65335446	ES	ENSMUST00000022550.8	novel	0.15	1	5.5	1	8;3	n	0.00	0	5.5	0	5;6	n	0.35	13	24.0	13	27;21	y	0.08	2	24.5	2	20;29	n	0.28	11	29.0	11	28;30	y	0.18	5	23.5	5	31;16	y	0.21	6	22.5	6	21;24	y	0.13	3	20.5	3	21;20	n	0.00	0	6.0	0	7;5	n	0.22	5	18.0	5	17;19	y	0.11	1	8.0	1	11;5	n	0.16	2	10.5	2	9;12	y	ENSMUSG00000021978.10	Extl3	chr14	protein_coding	exostosin-like glycosyltransferase 3
novel_NIR_6209	chr14	65315638	65335446	-	65315638;65317964	65317829;65335446	ES	ENSMUST00000225633.2	novel	0.20	1	4.0	1	8;0	n	0.00	0	2.5	0	5;0	n	0.49	13	13.5	13	27;0	y	0.17	2	10.0	2	20;0	y	0.44	11	14.0	11	28;0	y	0.24	5	15.5	5	31;0	y	0.36	6	10.5	6	21;0	y	0.22	3	10.5	3	21;0	y	0.00	0	3.5	0	7;0	n	0.37	5	8.5	5	17;0	y	0.15	1	5.5	1	11;0	n	0.31	2	4.5	2	9;0	y	ENSMUSG00000021978.10	Extl3	chr14	protein_coding	exostosin-like glycosyltransferase 3
novel_NIR_6210	chr14	65589045	65596457	-	65589045	65596794	A5SS	ENSMUST00000225691.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000114357.2	Gm48449	chr14	lncRNA	predicted gene, 48449
novel_NIR_6211	chr14	65595481	65622845	+	65596204	65622845	5pMXE	ENSMUST00000225865.2	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.12	2	14	2	14	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	8	0	8	n	0.00	0	19	0	19	n	0.22	2	7	2	7	y	0.22	2	7	2	7	y	ENSMUSG00000034522.11	Zfp395	chr14	protein_coding	zinc finger protein 395
novel_NIR_6212	chr14	65596204	65622848	+	65595867	65622848	A5SS	ENSMUST00000224623.2	novel	0.67	4	2	4	2	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.78	7	2	7	2	y	1.00	9	0	9	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	0.00	0	2	0	2	n	1.00	3	0	3	0	y	1.00	8	0	8	0	y	1.00	8	0	8	0	y	0.00	0	1	0	1	n	ENSMUSG00000034522.11	Zfp395	chr14	protein_coding	zinc finger protein 395
novel_NIR_6213	chr14	65596204	65622848	+	65596204	65622845	A3SS	ENSMUST00000225865.2	novel	0.50	4	4	4	4	y	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.33	7	14	7	14	y	0.56	9	7	9	7	y	0.00	0	1	0	1	n	0.71	5	2	5	2	y	0.00	0	2	0	2	n	0.27	3	8	3	8	y	0.30	8	19	8	19	y	0.53	8	7	8	7	y	0.00	0	7	0	7	n	ENSMUSG00000034522.11	Zfp395	chr14	protein_coding	zinc finger protein 395
novel_NIR_6214	chr14	65596204	65622848	+	65612998	65622848	5pMXE	ENSMUST00000224687.2	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	7	0	7	0	y	1.00	9	0	9	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	8	0	8	0	y	1.00	8	0	8	0	y	-	-	-	-	-	-	ENSMUSG00000034522.11	Zfp395	chr14	protein_coding	zinc finger protein 395
novel_NIR_6215	chr14	65596990	65622848	+	65595867	65622848	A5SS	ENSMUST00000224623.2	novel	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000034522.11	Zfp395	chr14	protein_coding	zinc finger protein 395
novel_NIR_6216	chr14	65596990	65622848	+	65612998	65622848	5pMXE	ENSMUST00000224687.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034522.11	Zfp395	chr14	protein_coding	zinc finger protein 395
novel_NIR_6217	chr14	65605128	65622848	+	65595867	65622848	A5SS	ENSMUST00000224623.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000034522.11	Zfp395	chr14	protein_coding	zinc finger protein 395
novel_NIR_6218	chr14	65605128	65622848	+	65612998	65622848	5pMXE	ENSMUST00000224687.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034522.11	Zfp395	chr14	protein_coding	zinc finger protein 395
novel_NIR_6219	chr14	65619102	65622845	+	65596204	65622845	A5SS	ENSMUST00000225865.2	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	19	0	19	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	ENSMUSG00000034522.11	Zfp395	chr14	protein_coding	zinc finger protein 395
novel_NIR_6220	chr14	65622885	65623035	+	65622885	65623776	A3SS	ENSMUST00000225865.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000034522.11	Zfp395	chr14	protein_coding	zinc finger protein 395
novel_NIR_6221	chr14	65908123	65916685	+	65914207	65916685	5pMXE	ENSMUST00000154373.2	novel	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	4	0	4	0	y	1.00	7	0	7	0	y	1.00	9	0	9	0	y	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000022032.15	Scara5	chr14	protein_coding	scavenger receptor class A, member 5
novel_NIR_6222	chr14	65979628	65985172	+	65979628	65980591	3pMXE	ENSMUST00000069226.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000022032.15	Scara5	chr14	protein_coding	scavenger receptor class A, member 5
novel_NIR_6223	chr14	65979628	65987767	+	65979628	65980591	3pMXE	ENSMUST00000069226.7	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000022032.15	Scara5	chr14	protein_coding	scavenger receptor class A, member 5
novel_NIR_6224	chr14	65979628	65988625	+	65979628	65980591	3pMXE	ENSMUST00000069226.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000022032.15	Scara5	chr14	protein_coding	scavenger receptor class A, member 5
novel_NIR_6225	chr14	66207621	66209181	+	66208153	66209181	5pMXE	ENSMUST00000127387.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.64	7	4	7	4	y	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	1.00	5	0	5	0	y	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.67	4	2	4	2	y	ENSMUSG00000022037.16	Clu	chr14	protein_coding	clusterin
novel_NIR_6226	chr14	66207621	66209181	+	66208393	66209181	5pMXE	ENSMUST00000138191.8	novel	0.11	1	8	1	8	n	0.00	0	10	0	10	n	0.39	7	11	7	11	y	0.00	0	9	0	9	n	0.07	1	13	1	13	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.25	2	6	2	6	y	0.45	5	6	5	6	y	0.12	1	7	1	7	n	0.00	0	2	0	2	n	0.25	4	12	4	12	y	ENSMUSG00000022037.16	Clu	chr14	protein_coding	clusterin
novel_NIR_6227	chr14	66207621	66209181	+	66208624	66209181	5pMXE	ENSMUST00000128539.8	novel	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.70	7	3	7	3	y	0.00	0	5	0	5	n	0.12	1	7	1	7	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.62	5	3	5	3	y	0.17	1	5	1	5	n	-	-	-	-	-	-	0.33	4	8	4	8	y	ENSMUSG00000022037.16	Clu	chr14	protein_coding	clusterin
novel_NIR_6228	chr14	66207621	66209181	+	66208993	66209181	5pMXE	ENSMUST00000144619.2	novel	0.33	1	2	1	2	n	0.00	0	3	0	3	n	1.00	7	0	7	0	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	1.00	2	0	2	0	y	0.83	5	1	5	1	y	0.25	1	3	1	3	n	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000022037.16	Clu	chr14	protein_coding	clusterin
novel_NIR_6229	chr14	66208136	66209181	+	66208153	66209181	A5SS	ENSMUST00000127387.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.60	3	2	3	2	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.60	3	2	3	2	y	ENSMUSG00000022037.16	Clu	chr14	protein_coding	clusterin
novel_NIR_6230	chr14	66208136	66209181	+	66208393	66209181	5pMXE	ENSMUST00000138191.8	novel	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.10	1	9	1	9	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.33	3	6	3	6	y	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.12	1	7	1	7	n	0.00	0	2	0	2	n	0.20	3	12	3	12	y	ENSMUSG00000022037.16	Clu	chr14	protein_coding	clusterin
novel_NIR_6231	chr14	66208136	66209181	+	66208624	66209181	5pMXE	ENSMUST00000128539.8	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.43	3	4	3	4	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	-	-	-	-	-	-	0.27	3	8	3	8	y	ENSMUSG00000022037.16	Clu	chr14	protein_coding	clusterin
novel_NIR_6232	chr14	66208136	66209181	+	66208993	66209181	5pMXE	ENSMUST00000144619.2	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.43	3	4	3	4	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.25	1	3	1	3	n	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000022037.16	Clu	chr14	protein_coding	clusterin
novel_NIR_6233	chr14	66378361	66379593	+	66372720	66379593	A5SS	ENSMUST00000206455.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.83	5	1	5	1	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	ENSMUSG00000022041.11	Chrna2	chr14	protein_coding	cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal)
novel_NIR_6234	chr14	66378361	66379593	+	66378454	66379593	5pMXE	ENSMUST00000022620.11	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.56	5	4	5	4	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000022041.11	Chrna2	chr14	protein_coding	cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal)
novel_NIR_6235	chr14	66873879	66874430	+	66873052	66874430	A5SS	ENSMUST00000159365.8	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	ENSMUSG00000045875.14	Adra1a	chr14	protein_coding	adrenergic receptor, alpha 1a
novel_NIR_6236	chr14	67237153	67245286	-	67237153	67237263	5pMXE	ENSMUST00000151059.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000022051.16	Bnip3l	chr14	protein_coding	BCL2/adenovirus E1B interacting protein 3-like
novel_NIR_6237	chr14	67237153	67245286	-	67237153	67237854	5pMXE	ENSMUST00000142593.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	ENSMUSG00000022051.16	Bnip3l	chr14	protein_coding	BCL2/adenovirus E1B interacting protein 3-like
novel_NIR_6238	chr14	67276418	67307684	-	67299947	67307684	A3SS&ES	ENSMUST00000225251.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022052.10	Ppp2r2a	chr14	protein_coding	protein phosphatase 2, regulatory subunit B, alpha
novel_NIR_6239	chr14	67971739	67971845	+	67971739	67975055	A3SS	ENSMUST00000152243.8	novel	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.00	0	20	0	20	n	0.07	1	14	1	14	n	0.00	0	21	0	21	n	0.00	0	13	0	13	n	0.00	0	24	0	24	n	0.00	0	9	0	9	n	0.20	2	8	2	8	y	0.00	0	22	0	22	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	ENSMUSG00000034327.18	Kctd9	chr14	protein_coding	potassium channel tetramerisation domain containing 9
novel_NIR_6240	chr14	69403294	69403416	-	69403294	69409025	A5SS	ENSMUST00000172547.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000092499.2	1700092C10Rik	chr14	lncRNA	RIKEN cDNA 1700092C10 gene
novel_NIR_6241	chr14	69403294	69411839	-	69403294	69409025	5pMXE	ENSMUST00000172547.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000092499.2	1700092C10Rik	chr14	lncRNA	RIKEN cDNA 1700092C10 gene
novel_NIR_6242	chr14	69570086	69574391	-	69570051	69574391	A3SS	ENSMUST00000181229.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000097511.3	Gm16677	chr14	lncRNA	predicted gene, 16677
novel_NIR_6243	chr14	69570086	69574391	-	69570086	69574397	A5SS	ENSMUST00000229870.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000097511.3	Gm16677	chr14	lncRNA	predicted gene, 16677
novel_NIR_6244	chr14	69594574	69596271	+	69594598	69596271	A5SS	ENSMUST00000184973.8	novel	1.00	18	0	18	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	12	0	12	0	y	1.00	19	0	19	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000095463.9	Entpd4	chr14	protein_coding	ectonucleoside triphosphate diphosphohydrolase 4
novel_NIR_6245	chr14	69709444	69712978	+	69709444	69714845	A3SS	ENSMUST00000111062.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000094526.2	Gm21451	chr14	unprocessed_pseudogene	predicted gene, 21451
novel_NIR_6246	chr14	69794581	69803185	+	69792987	69803185	A5SS	ENSMUST00000185072.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	ENSMUSG00000022066.17	Entpd4b	chr14	protein_coding	ectonucleoside triphosphate diphosphohydrolase 4B
novel_NIR_6247	chr14	69794581	69803185	+	69802531	69803185	A5SS&ES	ENSMUST00000185174.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000022066.17	Entpd4b	chr14	protein_coding	ectonucleoside triphosphate diphosphohydrolase 4B
novel_NIR_6248	chr14	69804075	69804772	+	69803293	69804772	A5SS	ENSMUST00000185072.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000022066.17	Entpd4b	chr14	protein_coding	ectonucleoside triphosphate diphosphohydrolase 4B
novel_NIR_6249	chr14	69807442	69828712	-	69822347	69828712	3pMXE	ENSMUST00000183339.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000098975.8	Gm27177	chr14	lncRNA	predicted gene 27177
novel_NIR_6250	chr14	69812824	69814521	+	69812848	69814521	A5SS	ENSMUST00000185072.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	26	0	26	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000022066.17	Entpd4b	chr14	protein_coding	ectonucleoside triphosphate diphosphohydrolase 4B
novel_NIR_6251	chr14	69813029	69814521	+	69812848	69814521	A5SS	ENSMUST00000185072.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022066.17	Entpd4b	chr14	protein_coding	ectonucleoside triphosphate diphosphohydrolase 4B
novel_NIR_6252	chr14	69822694	69828712	-	69822347	69828712	A3SS	ENSMUST00000183339.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000098975.8	Gm27177	chr14	lncRNA	predicted gene 27177
novel_NIR_6253	chr14	69822694	69828712	-	69826883	69828712	A3SS&ES	ENSMUST00000184034.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000098975.8	Gm27177	chr14	lncRNA	predicted gene 27177
novel_NIR_6254	chr14	70037230	70037817	-	70037230	70038067	A5SS	ENSMUST00000022665.4	novel	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.08	1	11	1	11	n	0.00	0	10	0	10	n	0.15	2	11	2	11	y	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.10	1	9	1	9	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.25	2	6	2	6	n	ENSMUSG00000022075.8	Rhobtb2	chr14	protein_coding	Rho-related BTB domain containing 2
novel_NIR_6255	chr14	70037230;70037880	70037817;70038067	-	70037230	70038067	cassetteExon	ENSMUST00000022665.4	novel	0.00	0.0	11	0;0	11	n	0.20	1.0	4	0;2	4	n	0.04	0.5	11	1;0	11	n	0.00	0.0	10	0;0	10	n	0.08	1.0	11	2;0	11	n	0.00	0.0	2	0;0	2	n	0.00	0.0	9	0;0	9	n	0.05	0.5	9	1;0	9	n	0.00	0.0	7	0;0	7	n	0.11	1.0	8	0;2	8	n	0.00	0.0	8	0;0	8	n	0.33	3.0	6	2;4	6	y	ENSMUSG00000022075.8	Rhobtb2	chr14	protein_coding	Rho-related BTB domain containing 2
novel_NIR_6256	chr14	70037880	70038067	-	70037230	70038067	A3SS	ENSMUST00000022665.4	novel	0.00	0	11	0	11	n	0.33	2	4	2	4	y	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.20	2	8	2	8	y	0.00	0	8	0	8	n	0.40	4	6	4	6	n	ENSMUSG00000022075.8	Rhobtb2	chr14	protein_coding	Rho-related BTB domain containing 2
novel_NIR_6257	chr14	70389418	70389822	-	70389420	70389822	A3SS	ENSMUST00000035612.7	novel	0.00	0	21	0	21	n	0.00	0	11	0	11	n	0.00	0	37	0	37	n	0.00	0	25	0	25	n	0.15	3	17	3	17	y	0.00	0	13	0	13	n	0.00	0	23	0	23	n	0.00	0	16	0	16	n	0.00	0	24	0	24	n	0.00	0	32	0	32	n	0.00	0	16	0	16	n	0.00	0	35	0	35	n	ENSMUSG00000033712.7	Ccar2	chr14	protein_coding	cell cycle activator and apoptosis regulator 2
novel_NIR_6258	chr14	70440452	70440721	-	70440497	70440721	A3SS	ENSMUST00000227653.2	novel	0.03	1	34	1	34	n	0.00	0	30	0	30	n	0.21	5	19	5	19	y	0.09	6	59	6	59	n	0.10	6	53	6	53	n	0.15	3	17	3	17	y	0.08	5	59	5	59	n	0.04	1	27	1	27	n	0.04	1	26	1	26	n	0.02	1	49	1	49	n	0.00	0	12	0	12	n	0.12	8	60	8	60	n	ENSMUSG00000022091.7	Sorbs3	chr14	protein_coding	sorbin and SH3 domain containing 3
novel_NIR_6259	chr14	70444751	70445037	+	70444303	70445037	A5SS	ENSMUST00000228730.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	ENSMUSG00000115186.2	Gm49417	chr14	lncRNA	predicted gene, 49417
novel_NIR_6260	chr14	70445120	70445651	-	70445120	70449183	A5SS	ENSMUST00000227929.2	novel	1.00	4	0	4	0	y	1.00	5	0	5	0	y	1.00	7	0	7	0	y	1.00	8	0	8	0	y	0.85	11	2	11	2	y	1.00	3	0	3	0	y	1.00	7	0	7	0	y	1.00	6	0	6	0	y	1.00	6	0	6	0	y	1.00	7	0	7	0	y	1.00	10	0	10	0	y	1.00	7	0	7	0	y	ENSMUSG00000022091.7	Sorbs3	chr14	protein_coding	sorbin and SH3 domain containing 3
novel_NIR_6261	chr14	70445461	70446228	+	70445461	70446233	A3SS	ENSMUST00000228730.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.60	3	2	3	2	y	ENSMUSG00000115186.2	Gm49417	chr14	lncRNA	predicted gene, 49417
novel_NIR_6262	chr14	70445461	70446228	+	70445461	70485078	A3SS	ENSMUST00000226259.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.67	2	1	2	1	y	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	ENSMUSG00000115186.2	Gm49417	chr14	lncRNA	predicted gene, 49417
novel_NIR_6263	chr14	70445461	70451961	+	70445461	70446233	A3SS&ES	ENSMUST00000228730.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.33	1	2	1	2	n	ENSMUSG00000115186.2	Gm49417	chr14	lncRNA	predicted gene, 49417
novel_NIR_6264	chr14	70445461	70451961	+	70445461	70485078	A3SS	ENSMUST00000226259.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000115186.2	Gm49417	chr14	lncRNA	predicted gene, 49417
novel_NIR_6265	chr14	70445461	70454260	+	70445461	70485078	A3SS	ENSMUST00000226259.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.83	5	1	5	1	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.67	2	1	2	1	y	1.00	2	0	2	0	y	1.00	3	0	3	0	n	ENSMUSG00000115186.2	Gm49417	chr14	lncRNA	predicted gene, 49417
novel_NIR_6266	chr14	70445461	70454260	+	70445461;70446371	70446233;70454260	ES	ENSMUST00000228730.2	novel	0.00	0	0.5	0	0;1	n	1.00	2	0.0	2	0;0	y	1.00	1	0.0	1	0;0	n	1.00	5	0.0	5	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	1.00	3	0.0	3	0;0	y	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	1.00	2	0.0	2	0;0	y	0.67	3	1.5	3	2;1	y	ENSMUSG00000115186.2	Gm49417	chr14	lncRNA	predicted gene, 49417
novel_NIR_6267	chr14	70446371	70451961	+	70446371	70454260	A3SS	ENSMUST00000228730.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	ENSMUSG00000115186.2	Gm49417	chr14	lncRNA	predicted gene, 49417
novel_NIR_6268	chr14	70452056	70454260	+	70446371	70454260	A5SS	ENSMUST00000228730.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000115186.2	Gm49417	chr14	lncRNA	predicted gene, 49417
novel_NIR_6269	chr14	70483441	70493809	-	70483441;70485168	70485023;70493809	ES	ENSMUST00000228911.2	novel	0.00	0	6.0	0	4;8	n	0.00	0	4.0	0	3;5	n	0.00	0	5.0	0	3;7	n	0.00	0	6.0	0	3;9	n	0.00	0	8.0	0	9;7	n	0.00	0	9.5	0	9;10	n	0.19	2	8.5	2	5;12	y	0.00	0	5.5	0	4;7	n	0.00	0	7.0	0	5;9	n	0.00	0	2.0	0	2;2	n	0.00	0	6.5	0	5;8	n	0.00	0	9.5	0	9;10	n	ENSMUSG00000022092.12	Ppp3cc	chr14	protein_coding	protein phosphatase 3, catalytic subunit, gamma isoform
novel_NIR_6270	chr14	70551219	70553113	-	70551219	70553887	A5SS	ENSMUST00000068044.14	novel	0.67	6	3	6	3	y	0.75	9	3	9	3	y	0.60	15	10	15	10	y	0.43	3	4	3	4	y	0.59	13	9	13	9	y	0.84	16	3	16	3	y	0.62	10	6	10	6	y	0.89	8	1	8	1	y	0.83	5	1	5	1	y	0.69	9	4	9	4	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000022094.16	Slc39a14	chr14	protein_coding	solute carrier family 39 (zinc transporter), member 14
novel_NIR_6271	chr14	70556389	70568760	-	70556389	70561160	5pMXE	ENSMUST00000151011.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.87	13	2	13	2	y	-	-	-	-	-	-	0.50	2	2	2	2	y	0.70	7	3	7	3	y	0.00	0	1	0	1	n	0.83	5	1	5	1	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022094.16	Slc39a14	chr14	protein_coding	solute carrier family 39 (zinc transporter), member 14
novel_NIR_6272	chr14	70556389	70578610	-	70556389	70561160	5pMXE	ENSMUST00000151011.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022094.16	Slc39a14	chr14	protein_coding	solute carrier family 39 (zinc transporter), member 14
novel_NIR_6273	chr14	70556389	70585772	-	70556389	70561160	5pMXE	ENSMUST00000151011.8	novel	1.00	5	0	5	0	y	1.00	2	0	2	0	y	0.87	13	2	13	2	y	1.00	3	0	3	0	y	0.75	6	2	6	2	y	0.57	4	3	4	3	y	0.75	3	1	3	1	y	0.93	13	1	13	1	y	0.00	0	1	0	1	n	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000022094.16	Slc39a14	chr14	protein_coding	solute carrier family 39 (zinc transporter), member 14
novel_NIR_6274	chr14	70556389	70585772	-	70556389	70588729	A5SS	ENSMUST00000146453.2	novel	0.19	5	21	5	21	n	0.15	2	11	2	11	n	0.11	13	110	13	110	n	0.07	3	37	3	37	n	0.09	6	60	6	60	n	0.08	4	44	4	44	n	0.07	3	40	3	40	n	0.17	13	65	13	65	n	0.00	0	17	0	17	n	0.16	6	31	6	31	y	0.00	0	15	0	15	n	0.07	3	37	3	37	n	ENSMUSG00000022094.16	Slc39a14	chr14	protein_coding	solute carrier family 39 (zinc transporter), member 14
novel_NIR_6275	chr14	70556389;70585971	70585772;70588729	-	70556389	70588729	cassetteExon	ENSMUST00000146453.2	novel	0.16	4.0	21	5;3	21	y	0.19	2.5	11	2;3	11	y	0.09	11.5	110	13;10	110	n	0.15	6.5	37	3;10	37	y	0.12	8.5	60	6;11	60	n	0.11	5.5	44	4;7	44	n	0.04	1.5	40	3;0	40	n	0.16	12.0	65	13;11	65	y	0.03	0.5	17	0;1	17	n	0.09	3.0	31	6;0	31	n	0.00	0.0	15	0;0	15	n	0.07	3.0	37	3;3	37	n	ENSMUSG00000022094.16	Slc39a14	chr14	protein_coding	solute carrier family 39 (zinc transporter), member 14
novel_NIR_6276	chr14	70568815	70569200	-	70568815	70571519	A5SS	ENSMUST00000152442.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022094.16	Slc39a14	chr14	protein_coding	solute carrier family 39 (zinc transporter), member 14
novel_NIR_6277	chr14	70568815	70569200	-	70568815	70585772	A5SS	ENSMUST00000152067.8	novel	0.00	0	30	0	30	n	0.00	0	15	0	15	n	0.15	5	29	5	29	y	0.00	0	19	0	19	n	0.00	0	37	0	37	n	0.00	0	26	0	26	n	0.00	0	25	0	25	n	0.08	2	24	2	24	n	0.00	0	11	0	11	n	0.14	3	19	3	19	n	0.00	0	7	0	7	n	0.00	0	17	0	17	n	ENSMUSG00000022094.16	Slc39a14	chr14	protein_coding	solute carrier family 39 (zinc transporter), member 14
novel_NIR_6278	chr14	70568815	70578610	-	70568815	70571519	5pMXE	ENSMUST00000152442.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000022094.16	Slc39a14	chr14	protein_coding	solute carrier family 39 (zinc transporter), member 14
novel_NIR_6279	chr14	70568815	70578610	-	70568815	70585772	A5SS	ENSMUST00000152067.8	novel	0.00	0	30	0	30	n	0.00	0	15	0	15	n	0.03	1	29	1	29	n	0.14	3	19	3	19	n	0.10	4	37	4	37	n	0.00	0	26	0	26	n	0.04	1	25	1	25	n	0.08	2	24	2	24	n	0.00	0	11	0	11	n	0.17	4	19	4	19	y	0.12	1	7	1	7	n	0.06	1	17	1	17	n	ENSMUSG00000022094.16	Slc39a14	chr14	protein_coding	solute carrier family 39 (zinc transporter), member 14
novel_NIR_6280	chr14	70568815	70587708	-	70568815	70571519	5pMXE	ENSMUST00000152442.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022094.16	Slc39a14	chr14	protein_coding	solute carrier family 39 (zinc transporter), member 14
novel_NIR_6281	chr14	70614365	70618291	-	70614365	70627341	A5SS	ENSMUST00000048129.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033644.6	Piwil2	chr14	protein_coding	piwi-like RNA-mediated gene silencing 2
novel_NIR_6282	chr14	70630029	70631038	-	70630029	70631460	A5SS	ENSMUST00000048129.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033644.6	Piwil2	chr14	protein_coding	piwi-like RNA-mediated gene silencing 2
novel_NIR_6283	chr14	70723712	70725910	-	70723712	70723994	5pMXE	ENSMUST00000228501.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	ENSMUSG00000022098.11	Bmp1	chr14	protein_coding	bone morphogenetic protein 1
novel_NIR_6284	chr14	70723712	70725910	-	70724370	70725910	A3SS	ENSMUST00000227944.2	novel	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.33	2	4	2	4	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	ENSMUSG00000022098.11	Bmp1	chr14	protein_coding	bone morphogenetic protein 1
novel_NIR_6285	chr14	70726030	70727460	-	70724370	70727460	A3SS	ENSMUST00000226906.2	novel	0.05	2	40	2	40	n	0.00	0	34	0	34	n	0.18	12	55	12	55	y	0.00	0	35	0	35	n	0.05	4	69	4	69	n	0.05	2	37	2	37	n	0.09	5	51	5	51	n	0.06	2	29	2	29	n	0.06	2	31	2	31	n	0.00	0	49	0	49	n	0.00	0	40	0	40	n	0.00	0	49	0	49	n	ENSMUSG00000022098.11	Bmp1	chr14	protein_coding	bone morphogenetic protein 1
novel_NIR_6286	chr14	70815550	70816416	+	70815550	70816774	A3SS	ENSMUST00000228554.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	14	0	14	0	y	1.00	3	0	3	0	y	1.00	7	0	7	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	2	0	2	0	y	ENSMUSG00000045211.6	Nudt18	chr14	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 18
novel_NIR_6287	chr14	70815550	70816420	+	70815550	70816774	A3SS	ENSMUST00000228554.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045211.6	Nudt18	chr14	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 18
novel_NIR_6288	chr14	70826674	70827569	-	70826561	70827569	A3SS	ENSMUST00000022690.10	novel	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.21	3	11	3	11	y	0.00	0	14	0	14	n	0.10	1	9	1	9	n	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	ENSMUSG00000022095.10	Fam160b2	chr14	protein_coding	family with sequence similarity 160, member B2
novel_NIR_6289	chr14	71014437	71014925	+	71014437	71014899	A3SS	ENSMUST00000022698.8	novel	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.17	1	5	1	5	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.12	1	7	1	7	n	0.00	0	7	0	7	n	ENSMUSG00000022102.14	Dok2	chr14	protein_coding	docking protein 2
novel_NIR_6290	chr14	72824280	72827194	-	72812120	72827194	A3SS	ENSMUST00000161550.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000033487.15	Fndc3a	chr14	protein_coding	fibronectin type III domain containing 3A
novel_NIR_6291	chr14	72889531	72947158	-	72889531;72921211	72921074;72947158	ES	ENSMUST00000089017.12	novel	0.13	1	6.5	1	6;7	n	0.00	0	5.5	0	7;4	n	0.00	0	9.5	0	15;4	n	0.00	0	10.0	0	16;4	n	0.00	0	14.5	0	17;12	n	0.12	1	7.0	1	5;9	n	0.33	2	4.0	2	5;3	y	0.00	0	10.5	0	13;8	n	0.00	0	4.0	0	3;5	n	0.00	0	11.5	0	12;11	n	0.00	0	3.5	0	1;6	n	0.16	2	10.5	2	12;9	y	ENSMUSG00000033487.15	Fndc3a	chr14	protein_coding	fibronectin type III domain containing 3A
novel_NIR_6292	chr14	73414570	73419899	+	73414574	73419899	A5SS	ENSMUST00000166875.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000022106.15	Rcbtb2	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
novel_NIR_6293	chr14	73454219	73493127	-	73454219	73499969	A5SS	ENSMUST00000022701.7	novel	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.25	2	6	2	6	y	0.00	0	21	0	21	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	ENSMUSG00000022105.7	Rb1	chr14	protein_coding	RB transcriptional corepressor 1
novel_NIR_6294	chr14	73605867	73622104	-	73605867	73606443	5pMXE	ENSMUST00000228707.2	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000022108.9	Itm2b	chr14	protein_coding	integral membrane protein 2B
novel_NIR_6295	chr14	73622135	73622450	-	73618226	73622450	A3SS	ENSMUST00000228637.2	novel	0.25	6	18	6	18	y	0.00	0	16	0	16	n	0.00	0	8	0	8	n	-	-	-	-	-	-	1.00	7	0	7	0	y	0.00	0	7	0	7	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	20	0	20	n	0.00	0	20	0	20	n	-	-	-	-	-	-	ENSMUSG00000022108.9	Itm2b	chr14	protein_coding	integral membrane protein 2B
novel_NIR_6296	chr14	73790337	73806074	+	73790337	73793460	3pMXE	ENSMUST00000162723.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	ENSMUSG00000022110.14	Sucla2	chr14	protein_coding	succinate-Coenzyme A ligase, ADP-forming, beta subunit
novel_NIR_6297	chr14	73790636	73797881	+	73767631	73797881	A5SS	ENSMUST00000162691.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	10	0	10	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000022110.14	Sucla2	chr14	protein_coding	succinate-Coenzyme A ligase, ADP-forming, beta subunit
novel_NIR_6298	chr14	74979578	74982088	+	74979578	74982990	A3SS	ENSMUST00000175712.8	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.29	2	5	2	5	y	ENSMUSG00000021996.17	Esd	chr14	protein_coding	esterase D/formylglutathione hydrolase
novel_NIR_6299	chr14	74979578	74982088	+	74979578	74987085	A3SS	ENSMUST00000176726.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000021996.17	Esd	chr14	protein_coding	esterase D/formylglutathione hydrolase
novel_NIR_6300	chr14	75064143	75073115	-	75064143	75073089	A5SS	ENSMUST00000088970.7	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	18	0	18	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.36	4	7	4	7	y	0.10	1	9	1	9	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000068015.9	Lrch1	chr14	protein_coding	leucine-rich repeats and calponin homology (CH) domain containing 1
novel_NIR_6301	chr14	75368644	75414255	+	75368644	75435517	A3SS	ENSMUST00000143539.8	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.50	2	2	2	2	y	0.38	3	5	3	5	y	ENSMUSG00000021998.17	Lcp1	chr14	protein_coding	lymphocyte cytosolic protein 1
novel_NIR_6302	chr14	75368644	75414255	+	75369151	75414255	5pMXE	ENSMUST00000125833.8	novel	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.00	0	21	0	21	n	0.05	1	20	1	20	n	0.00	0	20	0	20	n	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.00	0	8	0	8	n	0.00	0	16	0	16	n	0.03	1	31	1	31	n	0.11	2	17	2	17	n	0.18	3	14	3	14	y	ENSMUSG00000021998.17	Lcp1	chr14	protein_coding	lymphocyte cytosolic protein 1
novel_NIR_6303	chr14	75368644	75414255	+	75374082	75414255	5pMXE	ENSMUST00000145303.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	ENSMUSG00000021998.17	Lcp1	chr14	protein_coding	lymphocyte cytosolic protein 1
novel_NIR_6304	chr14	75368644	75414255	+	75412478	75414255	5pMXE	ENSMUST00000148609.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	ENSMUSG00000021998.17	Lcp1	chr14	protein_coding	lymphocyte cytosolic protein 1
novel_NIR_6305	chr14	75368644	75414255	+	75412761	75414255	A5SS&ES	ENSMUST00000134114.8	novel	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.06	1	15	1	15	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.06	1	15	1	15	n	0.25	2	6	2	6	y	0.27	3	8	3	8	y	ENSMUSG00000021998.17	Lcp1	chr14	protein_coding	lymphocyte cytosolic protein 1
novel_NIR_6306	chr14	75368644	75414255	+	75414154	75414255	5pMXE	ENSMUST00000149883.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.33	1	2	1	2	n	1.00	2	0	2	0	y	0.75	3	1	3	1	y	ENSMUSG00000021998.17	Lcp1	chr14	protein_coding	lymphocyte cytosolic protein 1
novel_NIR_6307	chr14	75368659	75412697	+	75368656	75412697	A5SS	ENSMUST00000134114.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021998.17	Lcp1	chr14	protein_coding	lymphocyte cytosolic protein 1
novel_NIR_6308	chr14	75368659	75412697	+	75374082	75412697	5pMXE	ENSMUST00000122840.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021998.17	Lcp1	chr14	protein_coding	lymphocyte cytosolic protein 1
novel_NIR_6309	chr14	75368659	75435517	+	75368644	75435517	A5SS	ENSMUST00000143539.8	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.12	1	7	1	7	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000021998.17	Lcp1	chr14	protein_coding	lymphocyte cytosolic protein 1
novel_NIR_6310	chr14	75368659	75435517	+	75427977	75435517	5pMXE	ENSMUST00000131802.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021998.17	Lcp1	chr14	protein_coding	lymphocyte cytosolic protein 1
novel_NIR_6311	chr14	75369151	75412697	+	75368656	75412697	A5SS	ENSMUST00000134114.8	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	6	0	6	0	y	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	10	0	10	0	y	1.00	12	0	12	0	y	1.00	7	0	7	0	y	1.00	5	0	5	0	y	ENSMUSG00000021998.17	Lcp1	chr14	protein_coding	lymphocyte cytosolic protein 1
novel_NIR_6312	chr14	75369151	75412697	+	75369151	75382615	3pMXE	ENSMUST00000124608.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	6	0	6	0	y	1.00	5	0	5	0	y	0.50	1	1	1	1	n	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	10	0	10	0	y	1.00	12	0	12	0	y	1.00	7	0	7	0	y	0.83	5	1	5	1	y	ENSMUSG00000021998.17	Lcp1	chr14	protein_coding	lymphocyte cytosolic protein 1
novel_NIR_6313	chr14	75369151	75412697	+	75369151	75414255	A3SS	ENSMUST00000125833.8	novel	0.25	1	3	1	3	n	0.07	1	13	1	13	n	0.22	6	21	6	21	y	0.20	5	20	5	20	y	0.05	1	20	1	20	n	0.18	2	9	2	9	y	0.23	5	17	5	17	y	0.20	2	8	2	8	y	0.38	10	16	10	16	y	0.28	12	31	12	31	y	0.29	7	17	7	17	y	0.26	5	14	5	14	y	ENSMUSG00000021998.17	Lcp1	chr14	protein_coding	lymphocyte cytosolic protein 1
novel_NIR_6314	chr14	75369151	75412697	+	75369151	75435517	A3SS	ENSMUST00000124499.8	novel	0.05	1	19	1	19	n	0.04	1	23	1	23	n	0.16	6	32	6	32	y	0.10	5	43	5	43	n	0.02	1	52	1	52	n	0.13	2	13	2	13	n	0.10	5	43	5	43	n	0.11	2	17	2	17	n	0.24	10	31	10	31	y	0.15	12	67	12	67	y	0.22	7	25	7	25	y	0.07	5	62	5	62	n	ENSMUSG00000021998.17	Lcp1	chr14	protein_coding	lymphocyte cytosolic protein 1
novel_NIR_6315	chr14	75369151	75412697	+	75374082	75412697	5pMXE	ENSMUST00000122840.8	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	6	0	6	0	y	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	10	0	10	0	y	1.00	12	0	12	0	y	1.00	7	0	7	0	y	1.00	5	0	5	0	y	ENSMUSG00000021998.17	Lcp1	chr14	protein_coding	lymphocyte cytosolic protein 1
novel_NIR_6316	chr14	75529727	75531303	+	75529727	75531331	A3SS	ENSMUST00000022577.6	novel	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	42	0	42	n	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.20	2	8	2	8	y	0.00	0	12	0	12	n	0.00	0	11	0	11	n	ENSMUSG00000022000.12	Zc3h13	chr14	protein_coding	zinc finger CCCH type containing 13
novel_NIR_6317	chr14	75543337	75545417	+	75543337	75546349	A3SS	ENSMUST00000022577.6	novel	0.17	1	5	1	5	n	0.00	0	12	0	12	n	0.00	0	52	0	52	n	0.00	0	13	0	13	n	0.00	0	37	0	37	n	0.00	0	6	0	6	n	0.00	0	17	0	17	n	0.18	2	9	2	9	y	0.00	0	7	0	7	n	0.00	0	23	0	23	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	ENSMUSG00000022000.12	Zc3h13	chr14	protein_coding	zinc finger CCCH type containing 13
novel_NIR_6318	chr14	75562044	75567114	+	75562044;75565584	75564984;75567114	ES	ENSMUST00000022577.6	novel	0.15	2	11.5	2	14;9	y	0.11	2	17.0	2	14;20	n	0.06	5	81.5	5	84;79	n	0.03	1	31.5	1	29;34	n	0.06	2	32.5	2	31;34	n	0.08	1	12.0	1	10;14	n	0.22	10	34.5	10	44;25	y	0.00	0	20.5	0	15;26	n	0.00	0	12.5	0	16;9	n	0.10	2	19.0	2	25;13	n	0.00	0	18.5	0	14;23	n	0.00	0	27.0	0	25;29	n	ENSMUSG00000022000.12	Zc3h13	chr14	protein_coding	zinc finger CCCH type containing 13
novel_NIR_6319	chr14	75979915	75981006	-	75979946	75981006	A3SS	ENSMUST00000049168.9	novel	0.17	1	5	1	5	n	0.62	5	3	5	3	y	0.00	0	24	0	24	n	0.00	0	14	0	14	n	0.15	3	17	3	17	y	0.12	3	22	3	22	n	0.11	2	17	2	17	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.50	3	3	3	3	y	0.00	0	18	0	18	n	ENSMUSG00000034893.10	Cog3	chr14	protein_coding	component of oligomeric golgi complex 3
novel_NIR_6320	chr14	7693862	7694335	-	7690937	7694335	A3SS	ENSMUST00000224952.3	novel	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.00	0	15	0	15	n	0.67	2	1	2	1	y	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	ENSMUSG00000021733.12	Slc4a7	chr14	protein_coding	solute carrier family 4, sodium bicarbonate cotransporter, member 7
novel_NIR_6321	chr14	78090411	78092608	-	78090411	78112238	A5SS	ENSMUST00000022590.5	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	ENSMUSG00000022013.5	Dnajc15	chr14	protein_coding	DnaJ heat shock protein family (Hsp40) member C15
novel_NIR_6322	chr14	78098682	78112238	-	78090411	78112238	A3SS	ENSMUST00000022590.5	novel	0.25	1	3	1	3	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.40	2	3	2	3	y	ENSMUSG00000022013.5	Dnajc15	chr14	protein_coding	DnaJ heat shock protein family (Hsp40) member C15
novel_NIR_6323	chr14	78740465	78745165	-	78739676	78745165	A3SS	ENSMUST00000226416.2	novel	0.72	13	5	13	5	y	0.64	9	5	9	5	y	0.88	43	6	43	6	y	0.57	8	6	8	6	y	0.73	27	10	27	10	y	0.60	12	8	12	8	y	0.68	21	10	21	10	y	1.00	15	0	15	0	y	0.56	9	7	9	7	y	0.74	25	9	25	9	y	0.74	17	6	17	6	y	0.79	23	6	23	6	y	ENSMUSG00000022016.18	Akap11	chr14	protein_coding	A kinase (PRKA) anchor protein 11
novel_NIR_6324	chr14	78740465	78745165	-	78740462	78745165	A3SS	ENSMUST00000123853.9	novel	0.81	13	3	13	3	y	0.64	9	5	9	5	y	0.70	43	18	43	18	y	0.53	8	7	8	7	y	0.75	27	9	27	9	y	0.35	12	22	12	22	y	0.58	21	15	21	15	y	0.79	15	4	15	4	y	0.64	9	5	9	5	y	0.81	25	6	25	6	y	0.77	17	5	17	5	y	0.59	23	16	23	16	y	ENSMUSG00000022016.18	Akap11	chr14	protein_coding	A kinase (PRKA) anchor protein 11
novel_NIR_6325	chr14	78752434	78753763	-	78752511	78753763	A3SS	ENSMUST00000123853.9	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.07	2	27	2	27	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.25	2	6	2	6	y	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	1	0	1	n	0.00	0	15	0	15	n	ENSMUSG00000022016.18	Akap11	chr14	protein_coding	A kinase (PRKA) anchor protein 11
novel_NIR_6326	chr14	78819011	78819340	-	78819011	78821815	A5SS	ENSMUST00000226342.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000034731.12	Dgkh	chr14	protein_coding	diacylglycerol kinase, eta
novel_NIR_6327	chr14	79320351	79320590	+	79320351	79324060	A3SS	ENSMUST00000040990.7	novel	0.07	4	50	4	50	n	0.19	9	39	9	39	y	0.09	11	112	11	112	n	0.05	4	83	4	83	n	0.10	15	138	15	138	n	0.05	3	57	3	57	n	0.05	7	128	7	128	n	0.05	4	82	4	82	n	0.06	4	63	4	63	n	0.08	12	146	12	146	n	0.07	5	65	5	65	n	0.12	10	70	10	70	n	ENSMUSG00000058997.9	Vwa8	chr14	protein_coding	von Willebrand factor A domain containing 8
novel_NIR_6328	chr14	79322869	79324060	+	79320351	79324060	A5SS	ENSMUST00000040990.7	novel	0.12	7	50	7	50	n	0.19	9	39	9	39	y	0.05	6	112	6	112	n	0.09	8	83	8	83	n	0.10	15	138	15	138	n	0.05	3	57	3	57	n	0.10	14	128	14	128	n	0.00	0	82	0	82	n	0.02	1	63	1	63	n	0.06	10	146	10	146	n	0.06	4	65	4	65	n	0.00	0	70	0	70	n	ENSMUSG00000058997.9	Vwa8	chr14	protein_coding	von Willebrand factor A domain containing 8
novel_NIR_6329	chr14	79378984	79394512	+	79381657	79394512	5pMXE	ENSMUST00000228904.2	novel	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000058997.9	Vwa8	chr14	protein_coding	von Willebrand factor A domain containing 8
novel_NIR_6330	chr14	79607537	79614808	-	79607537;79612295	79612176;79614808	ES	ENSMUST00000022597.15	novel	0.00	0	8.5	0	11;6	n	0.00	0	8.5	0	8;9	n	0.00	0	15.0	0	18;12	n	0.00	0	13.0	0	14;12	n	0.00	0	17.0	0	19;15	n	0.00	0	4.5	0	6;3	n	0.00	0	12.5	0	15;10	n	0.00	0	11.0	0	14;8	n	0.00	0	6.5	0	7;6	n	0.00	0	12.0	0	9;15	n	0.00	0	4.5	0	6;3	n	0.16	2	10.5	2	12;9	y	ENSMUSG00000022020.16	Naa16	chr14	protein_coding	N(alpha)-acetyltransferase 16, NatA auxiliary subunit
novel_NIR_6331	chr14	79624546	79627490	-	79624546	79628002	A5SS	ENSMUST00000022597.15	novel	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.17	2	10	2	10	y	0.00	0	6	0	6	n	0.00	0	7	0	7	n	ENSMUSG00000022020.16	Naa16	chr14	protein_coding	N(alpha)-acetyltransferase 16, NatA auxiliary subunit
novel_NIR_6332	chr14	79857239	79861247	+	79857239	79859544	A3SS&ES	ENSMUST00000228669.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	1.00	1	0	1	0	n	ENSMUSG00000022024.11	Sugt1	chr14	protein_coding	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)
novel_NIR_6333	chr14	79857239;79857487	79857384;79862281	+	79857239;79859651	79859544;79862281	MXE	ENSMUST00000228669.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1.0	0.0	0;2	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2.0	0.0	2;2	0;0	y	0.00	0.0	0.5	0;0	1;0	n	-	-	-	-	-	-	ENSMUSG00000022024.11	Sugt1	chr14	protein_coding	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)
novel_NIR_6334	chr14	79857487	79862281	+	79859651	79862281	A5SS&ES	ENSMUST00000228669.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022024.11	Sugt1	chr14	protein_coding	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)
novel_NIR_6335	chr14	8120909	8123251	-	8120942	8123251	A3SS	ENSMUST00000225560.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	ENSMUSG00000068758.9	Il3ra	chr14	protein_coding	interleukin 3 receptor, alpha chain
novel_NIR_6336	chr14	8120909	8123251	-	8122663	8123251	A3SS&ES	ENSMUST00000225775.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	3	0	3	n	ENSMUSG00000068758.9	Il3ra	chr14	protein_coding	interleukin 3 receptor, alpha chain
novel_NIR_6337	chr14	8120909	8123251	-	8122753	8123251	A3SS&ES	ENSMUST00000090591.4	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000068758.9	Il3ra	chr14	protein_coding	interleukin 3 receptor, alpha chain
novel_NIR_6338	chr14	8122969	8123251	-	8120942	8123251	A3SS	ENSMUST00000225560.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000068758.9	Il3ra	chr14	protein_coding	interleukin 3 receptor, alpha chain
novel_NIR_6339	chr14	8122969	8123251	-	8122663	8123251	A3SS	ENSMUST00000225775.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000068758.9	Il3ra	chr14	protein_coding	interleukin 3 receptor, alpha chain
novel_NIR_6340	chr14	8122969	8123251	-	8122753	8123251	A3SS	ENSMUST00000090591.4	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.29	2	5	2	5	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000068758.9	Il3ra	chr14	protein_coding	interleukin 3 receptor, alpha chain
novel_NIR_6341	chr14	8349776	8350610	+	8349776	8353170	A3SS	ENSMUST00000224955.2	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.38	5	8	5	8	y	-	-	-	-	-	-	0.00	0	7	0	7	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021737.5	Psmd6	chr14	protein_coding	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6
novel_NIR_6342	chr14	8382480	8401840	-	8382480	8416740	A5SS	ENSMUST00000022257.4	novel	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.00	0	26	0	26	n	0.14	4	24	4	24	n	0.00	0	23	0	23	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	21	0	21	n	0.08	1	11	1	11	n	0.05	1	20	1	20	n	0.18	2	9	2	9	y	0.05	1	18	1	18	n	ENSMUSG00000021738.6	Atxn7	chr14	protein_coding	ataxin 7
novel_NIR_6343	chr14	8382480	8413881	-	8382480	8416740	A5SS	ENSMUST00000022257.4	novel	0.00	0	14	0	14	n	0.14	1	6	1	6	n	0.04	1	26	1	26	n	0.00	0	24	0	24	n	0.00	0	23	0	23	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.09	2	21	2	21	n	0.21	3	11	3	11	y	0.00	0	20	0	20	n	0.10	1	9	1	9	n	0.00	0	18	0	18	n	ENSMUSG00000021738.6	Atxn7	chr14	protein_coding	ataxin 7
novel_NIR_6344	chr14	8386669	8416740	-	8382480	8416740	A3SS	ENSMUST00000022257.4	novel	0.07	1	14	1	14	n	0.00	0	6	0	6	n	0.00	0	26	0	26	n	0.00	0	24	0	24	n	0.04	1	23	1	23	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.12	3	21	3	21	n	0.15	2	11	2	11	y	0.00	0	20	0	20	n	0.00	0	9	0	9	n	0.00	0	18	0	18	n	ENSMUSG00000021738.6	Atxn7	chr14	protein_coding	ataxin 7
novel_NIR_6345	chr14	8386669	8416740	-	8399451	8416740	3pMXE	ENSMUST00000226073.2	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021738.6	Atxn7	chr14	protein_coding	ataxin 7
novel_NIR_6346	chr14	8414020	8416740	-	8382480	8416740	A3SS	ENSMUST00000022257.4	novel	0.22	4	14	4	14	y	0.14	1	6	1	6	n	0.00	0	26	0	26	n	0.08	2	24	2	24	n	0.12	3	23	3	23	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	21	0	21	n	0.00	0	11	0	11	n	0.00	0	20	0	20	n	0.00	0	9	0	9	n	0.00	0	18	0	18	n	ENSMUSG00000021738.6	Atxn7	chr14	protein_coding	ataxin 7
novel_NIR_6347	chr14	8414020	8416740	-	8399451	8416740	A3SS	ENSMUST00000226073.2	novel	0.80	4	1	4	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000021738.6	Atxn7	chr14	protein_coding	ataxin 7
novel_NIR_6348	chr14	8427318	8456108	-	8416844	8456108	A3SS	ENSMUST00000022257.4	novel	0.00	0	14	0	14	n	0.20	2	8	2	8	y	0.04	1	22	1	22	n	0.00	0	20	0	20	n	0.09	3	29	3	29	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.05	1	19	1	19	n	0.00	0	18	0	18	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.14	2	12	2	12	n	ENSMUSG00000021738.6	Atxn7	chr14	protein_coding	ataxin 7
novel_NIR_6349	chr14	8427318	8456108	-	8433374	8456108	3pMXE	ENSMUST00000224370.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.75	3	1	3	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.40	2	3	2	3	y	ENSMUSG00000021738.6	Atxn7	chr14	protein_coding	ataxin 7
novel_NIR_6350	chr14	8456690	8508240	-	8456690	8457013	5pMXE	ENSMUST00000022257.4	novel	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.36	4	7	4	7	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	ENSMUSG00000021738.6	Atxn7	chr14	protein_coding	ataxin 7
novel_NIR_6351	chr14	8456690	8508240	-	8456690	8474668	5pMXE	ENSMUST00000223714.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	4	2	4	2	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000021738.6	Atxn7	chr14	protein_coding	ataxin 7
novel_NIR_6352	chr14	8456690	8508240	-	8456690;8474756	8474668;8508240	ES	ENSMUST00000223880.2	novel	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	0.80	4	1.0	4	2;0	y	0.00	0	1.5	0	1;2	n	0.00	0	1.5	0	2;1	n	-	-	-	-	-	-	0.00	0	3.0	0	5;1	n	0.00	0	2.5	0	3;2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1.0	0	0;2	n	0.00	0	1.0	0	2;0	n	ENSMUSG00000021738.6	Atxn7	chr14	protein_coding	ataxin 7
novel_NIR_6353	chr14	8508578	8512583	+	8508578	8512132	A3SS&ES	ENSMUST00000225401.2	novel	0.00	0	9	0	9	n	0.38	5	8	5	8	y	0.17	2	10	2	10	y	0.00	0	2	0	2	n	0.00	0	18	0	18	n	0.00	0	5	0	5	n	0.19	3	13	3	13	y	0.18	2	9	2	9	y	0.00	0	5	0	5	n	0.42	8	11	8	11	y	0.00	0	8	0	8	n	0.00	0	8	0	8	n	ENSMUSG00000053453.10	Thoc7	chr14	protein_coding	THO complex 7
novel_NIR_6354	chr14	8508578	8512583	+	8512283	8512583	5pMXE	ENSMUST00000224652.2	novel	0.00	0	2	0	2	n	0.83	5	1	5	1	y	0.29	2	5	2	5	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.43	3	4	3	4	y	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.89	8	1	8	1	y	0.00	0	7	0	7	n	-	-	-	-	-	-	ENSMUSG00000053453.10	Thoc7	chr14	protein_coding	THO complex 7
novel_NIR_6355	chr14	8512209	8512583	+	8512209	8515107	A3SS	ENSMUST00000225401.2	novel	0.77	10	3	10	3	y	0.36	5	9	5	9	y	0.33	4	8	4	8	y	0.41	9	13	9	13	y	0.00	0	9	0	9	n	0.29	2	5	2	5	y	0.10	1	9	1	9	n	0.00	0	3	0	3	n	0.67	8	4	8	4	y	0.00	0	11	0	11	n	0.29	2	5	2	5	y	0.24	4	13	4	13	y	ENSMUSG00000053453.10	Thoc7	chr14	protein_coding	THO complex 7
novel_NIR_6356	chr14	8512209	8512583	+	8512283	8512583	5pMXE	ENSMUST00000224652.2	novel	0.83	10	2	10	2	y	0.83	5	1	5	1	y	0.44	4	5	4	5	y	0.90	9	1	9	1	y	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.20	1	4	1	4	n	-	-	-	-	-	-	0.73	8	3	8	3	y	0.00	0	1	0	1	n	0.22	2	7	2	7	y	1.00	4	0	4	0	y	ENSMUSG00000053453.10	Thoc7	chr14	protein_coding	THO complex 7
novel_NIR_6357	chr14	8512303	8512583	+	8512283	8512583	A5SS	ENSMUST00000224652.2	novel	0.50	2	2	2	2	y	0.67	2	1	2	1	y	0.17	1	5	1	5	n	0.50	1	1	1	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.43	3	4	3	4	y	-	-	-	-	-	-	0.40	2	3	2	3	y	0.88	7	1	7	1	y	0.12	1	7	1	7	n	1.00	2	0	2	0	y	ENSMUSG00000053453.10	Thoc7	chr14	protein_coding	THO complex 7
novel_NIR_6358	chr14	8512303	8512583	+	8512303	8515107	A3SS	ENSMUST00000225202.2	novel	0.25	2	6	2	6	y	0.22	2	7	2	7	y	0.05	1	18	1	18	n	0.09	1	10	1	10	n	0.06	1	15	1	15	n	0.00	0	9	0	9	n	0.18	3	14	3	14	y	0.00	0	18	0	18	n	0.33	2	4	2	4	y	0.41	7	10	7	10	y	0.08	1	12	1	12	n	0.14	2	12	2	12	n	ENSMUSG00000053453.10	Thoc7	chr14	protein_coding	THO complex 7
novel_NIR_6359	chr14	8526212	8534236	-	8526212	8536687	A5SS	ENSMUST00000238865.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000079357.10	Gm11100	chr14	protein_coding	predicted gene 11100
novel_NIR_6360	chr14	8526212	8534236	-	8526212	8536962	A5SS	ENSMUST00000159275.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000079357.10	Gm11100	chr14	protein_coding	predicted gene 11100
novel_NIR_6361	chr14	8526212	8534236	-	8526212	8547904	A5SS	ENSMUST00000112652.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000079357.10	Gm11100	chr14	protein_coding	predicted gene 11100
novel_NIR_6362	chr14	86508466	86532069	-	86503254	86532069	A3SS	ENSMUST00000228609.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000115777.2	Gm32815	chr14	lncRNA	predicted gene, 32815
novel_NIR_6363	chr14	87655025	87694470	+	87654284	87694470	A5SS	ENSMUST00000169504.8	novel	0.50	4	4	4	4	y	0.00	0	6	0	6	n	0.43	3	4	3	4	y	0.00	0	12	0	12	n	0.57	4	3	4	3	y	0.00	0	3	0	3	n	0.62	5	3	5	3	y	0.57	4	3	4	3	y	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.33	2	4	2	4	y	0.00	0	10	0	10	n	ENSMUSG00000022019.17	Tdrd3	chr14	protein_coding	tudor domain containing 3
novel_NIR_6364	chr14	87655029	87694470	+	87654284	87694470	A5SS	ENSMUST00000169504.8	novel	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.33	2	4	2	4	y	0.17	2	10	2	10	y	ENSMUSG00000022019.17	Tdrd3	chr14	protein_coding	tudor domain containing 3
novel_NIR_6365	chr14	87694554	87696197	+	87694554	87695499	A3SS&ES	ENSMUST00000170712.8	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000022019.17	Tdrd3	chr14	protein_coding	tudor domain containing 3
novel_NIR_6366	chr14	87694554	87696197	+	87694554	87696193	A3SS	ENSMUST00000169504.8	novel	0.17	2	10	2	10	y	0.14	1	6	1	6	n	0.12	1	7	1	7	n	0.20	2	8	2	8	y	0.00	0	12	0	12	n	0.25	1	3	1	3	n	0.00	0	9	0	9	n	0.27	3	8	3	8	y	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.06	1	16	1	16	n	0.06	1	17	1	17	n	ENSMUSG00000022019.17	Tdrd3	chr14	protein_coding	tudor domain containing 3
novel_NIR_6367	chr14	87749206	87753657	+	87749206	87776833	A3SS	ENSMUST00000168275.9	novel	0.00	0	17	0	17	n	0.11	2	16	2	16	n	0.20	1	4	1	4	n	0.00	0	15	0	15	n	0.06	1	17	1	17	n	0.17	2	10	2	10	y	0.12	3	22	3	22	n	0.10	1	9	1	9	n	0.10	1	9	1	9	n	0.19	5	21	5	21	y	0.00	0	25	0	25	n	0.00	0	8	0	8	n	ENSMUSG00000022019.17	Tdrd3	chr14	protein_coding	tudor domain containing 3
novel_NIR_6368	chr14	99338737	99344735	+	99338737;99342705	99342605;99344735	ES	ENSMUST00000228246.2	novel	0.00	0	1.0	0	0;2	n	0.44	2	2.5	2	1;4	y	0.00	0	6.0	0	3;9	n	0.11	1	8.0	1	5;11	n	0.00	0	6.0	0	5;7	n	0.22	1	3.5	1	5;2	n	0.00	0	2.0	0	0;4	n	0.00	0	3.0	0	3;3	n	0.00	0	6.5	0	6;7	n	0.00	0	8.5	0	7;10	n	0.00	0	2.0	0	2;2	n	0.00	0	8.5	0	7;10	n	ENSMUSG00000022064.11	Pibf1	chr14	protein_coding	progesterone immunomodulatory binding factor 1
novel_NIR_6369	chr14	99448506	99480275	+	99448506	99458995	3pMXE	ENSMUST00000227969.2	novel	0.25	3	9	3	9	y	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	ENSMUSG00000022064.11	Pibf1	chr14	protein_coding	progesterone immunomodulatory binding factor 1
novel_NIR_6370	chr14	99448506	99480275	+	99448506;99459079	99458995;99480275	ES	ENSMUST00000022650.9	novel	0.29	3	7.5	3	9;6	y	0.00	0	7.0	0	1;13	n	0.00	0	9.0	0	6;12	n	0.00	0	6.0	0	7;5	n	0.00	0	8.5	0	6;11	n	0.00	0	4.0	0	4;4	n	0.00	0	5.5	0	3;8	n	0.00	0	2.5	0	1;4	n	0.00	0	5.0	0	5;5	n	0.00	0	9.5	0	8;11	n	0.00	0	7.5	0	8;7	n	0.00	0	7.5	0	5;10	n	ENSMUSG00000022064.11	Pibf1	chr14	protein_coding	progesterone immunomodulatory binding factor 1
novel_NIR_6371	chr14	99480031	99480275	+	99459079	99480275	A5SS	ENSMUST00000022650.9	novel	0.25	2	6	2	6	y	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.20	1	4	1	4	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	ENSMUSG00000022064.11	Pibf1	chr14	protein_coding	progesterone immunomodulatory binding factor 1
novel_NIR_6372	chr15	100128489	100130614	+	100126486	100130614	A5SS	ENSMUST00000171869.3	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	10	0	10	n	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	ENSMUSG00000023027.14	Atf1	chr15	protein_coding	activating transcription factor 1
novel_NIR_6373	chr15	100128489	100130614	+	100130140	100130614	5pMXE	ENSMUST00000172154.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023027.14	Atf1	chr15	protein_coding	activating transcription factor 1
novel_NIR_6374	chr15	100128489	100130614	+	100130196	100130614	5pMXE	ENSMUST00000165804.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023027.14	Atf1	chr15	protein_coding	activating transcription factor 1
novel_NIR_6375	chr15	100152394	100157698	+	100152394	100157701	A3SS	ENSMUST00000166435.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.67	4	2	4	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023027.14	Atf1	chr15	protein_coding	activating transcription factor 1
novel_NIR_6376	chr15	100202272	100202804	+	100202143	100202804	A5SS	ENSMUST00000230472.2	novel	0.00	0	18	0	18	n	0.00	0	23	0	23	n	0.00	0	15	0	15	n	0.00	0	40	0	40	n	0.06	2	32	2	32	n	0.00	0	19	0	19	n	0.03	1	33	1	33	n	0.00	0	7	0	7	n	0.00	0	33	0	33	n	0.03	1	31	1	31	n	0.18	6	27	6	27	y	0.04	1	25	1	25	n	ENSMUSG00000054619.8	Mettl7a1	chr15	protein_coding	methyltransferase like 7A1
novel_NIR_6377	chr15	100202272	100202878	+	100202143	100202878	A5SS	ENSMUST00000229574.2	novel	0.60	3	2	3	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.25	1	3	1	3	n	-	-	-	-	-	-	ENSMUSG00000054619.8	Mettl7a1	chr15	protein_coding	methyltransferase like 7A1
novel_NIR_6378	chr15	100202955	100203043	+	100202955	100203055	A3SS	ENSMUST00000229574.2	novel	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.55	6	5	6	5	y	0.00	0	2	0	2	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.25	2	6	2	6	y	0.00	0	1	0	1	n	ENSMUSG00000054619.8	Mettl7a1	chr15	protein_coding	methyltransferase like 7A1
novel_NIR_6379	chr15	100202955	100233039	+	100202955	100203055	3pMXE	ENSMUST00000230252.2	novel	0.14	1	6	1	6	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.90	78	9	78	9	y	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.85	41	7	41	7	y	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	1	0	1	n	ENSMUSG00000054619.8	Mettl7a1	chr15	protein_coding	methyltransferase like 7A1
novel_NIR_6380	chr15	100203225	100204459	+	100203225	100226099	A3SS	ENSMUST00000229588.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	4	2	4	2	y	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000054619.8	Mettl7a1	chr15	protein_coding	methyltransferase like 7A1
novel_NIR_6381	chr15	100203225	100210295	+	100203225	100207705	A3SS&ES	ENSMUST00000230018.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	1.00	1	0	1	0	n	ENSMUSG00000054619.8	Mettl7a1	chr15	protein_coding	methyltransferase like 7A1
novel_NIR_6382	chr15	100203225	100210295	+	100203225	100226099	A3SS	ENSMUST00000229588.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000054619.8	Mettl7a1	chr15	protein_coding	methyltransferase like 7A1
novel_NIR_6383	chr15	100203225	100226114	+	100203225	100226099	A3SS	ENSMUST00000229588.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000054619.8	Mettl7a1	chr15	protein_coding	methyltransferase like 7A1
novel_NIR_6384	chr15	100203225;100204559	100204459;100210875	+	100203225;100207785	100207705;100210875	MXE	ENSMUST00000230018.2	novel	0.00	0.0	0.5	0;0	1;0	n	1.00	2.0	0.0	2;2	0;0	y	1.00	0.5	0.0	0;1	0;0	n	1.00	0.5	0.0	0;1	0;0	n	1.00	2.5	0.0	4;1	0;0	n	0.00	0.0	2.0	0;0	1;3	n	-	-	-	-	-	-	1.00	0.5	0.0	0;1	0;0	n	-	-	-	-	-	-	0.00	0.0	0.5	0;0	1;0	n	0.00	0.0	0.5	0;0	1;0	n	1.00	0.5	0.0	1;0	0;0	n	ENSMUSG00000054619.8	Mettl7a1	chr15	protein_coding	methyltransferase like 7A1
novel_NIR_6385	chr15	100210398	100210875	+	100207785	100210875	A5SS	ENSMUST00000230018.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	n	ENSMUSG00000054619.8	Mettl7a1	chr15	protein_coding	methyltransferase like 7A1
novel_NIR_6386	chr15	100310143	100313508	-	100310143	100321777	A5SS	ENSMUST00000154676.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023030.17	Slc11a2	chr15	protein_coding	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2
novel_NIR_6387	chr15	100310143	100313508	-	100310143	100321985	A5SS	ENSMUST00000154331.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023030.17	Slc11a2	chr15	protein_coding	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2
novel_NIR_6388	chr15	100310143	100313508	-	100310143	100322793	A5SS	ENSMUST00000123461.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023030.17	Slc11a2	chr15	protein_coding	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2
novel_NIR_6389	chr15	100310143	100319171	-	100310143	100321777	A5SS	ENSMUST00000154676.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023030.17	Slc11a2	chr15	protein_coding	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2
novel_NIR_6390	chr15	100310143	100319171	-	100310143	100321985	A5SS	ENSMUST00000154331.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023030.17	Slc11a2	chr15	protein_coding	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2
novel_NIR_6391	chr15	100310143	100319171	-	100310143	100322793	A5SS	ENSMUST00000123461.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023030.17	Slc11a2	chr15	protein_coding	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2
novel_NIR_6392	chr15	100402321	100404087	-	100396182	100404087	A3SS	ENSMUST00000231174.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	5	0	5	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	ENSMUSG00000009733.10	Tfcp2	chr15	protein_coding	transcription factor CP2
novel_NIR_6393	chr15	100402321	100404087	-	100402324	100404087	A3SS	ENSMUST00000229696.2	novel	0.00	0	13	0	13	n	0.17	2	10	2	10	y	0.11	2	17	2	17	n	0.00	0	12	0	12	n	0.20	4	16	4	16	y	0.12	1	7	1	7	n	0.24	4	13	4	13	y	0.19	3	13	3	13	y	0.38	5	8	5	8	y	0.44	4	5	4	5	y	0.10	2	19	2	19	n	0.20	2	8	2	8	y	ENSMUSG00000009733.10	Tfcp2	chr15	protein_coding	transcription factor CP2
novel_NIR_6394	chr15	100409718	100410102	-	100409718	100410090	A5SS	ENSMUST00000231174.2	novel	0.00	0	9	0	9	n	0.00	0	26	0	26	n	0.23	3	10	3	10	y	0.07	1	13	1	13	n	0.00	0	23	0	23	n	0.20	3	12	3	12	y	0.09	1	10	1	10	n	0.00	0	10	0	10	n	0.20	3	12	3	12	y	0.12	1	7	1	7	n	0.00	0	16	0	16	n	0.08	1	12	1	12	n	ENSMUSG00000009733.10	Tfcp2	chr15	protein_coding	transcription factor CP2
novel_NIR_6395	chr15	100448785	100449206	-	100423553	100449206	A3SS	ENSMUST00000229265.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000009733.10	Tfcp2	chr15	protein_coding	transcription factor CP2
novel_NIR_6396	chr15	100448785	100449206	-	100426427	100449206	A3SS	ENSMUST00000229696.2	novel	0.00	0	4	0	4	n	0.29	2	5	2	5	y	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.04	1	22	1	22	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.10	1	9	1	9	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	ENSMUSG00000009733.10	Tfcp2	chr15	protein_coding	transcription factor CP2
novel_NIR_6397	chr15	100448785	100449206	-	100446216	100449206	A3SS	ENSMUST00000230254.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000009733.10	Tfcp2	chr15	protein_coding	transcription factor CP2
novel_NIR_6398	chr15	100476499	100478691	-	100476499	100477757	5pMXE	ENSMUST00000177335.2	novel	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.25	2	6	2	6	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	ENSMUSG00000009739.18	Pou6f1	chr15	protein_coding	POU domain, class 6, transcription factor 1
novel_NIR_6399	chr15	100476499	100478691	-	100476499;100477925	100477757;100478691	ES	ENSMUST00000176271.9	novel	0.00	0	4.0	0	4;4	n	0.00	0	4.5	0	6;3	n	0.00	0	8.0	0	10;6	n	0.00	0	2.0	0	2;2	n	0.17	2	9.5	2	6;13	y	0.00	0	3.5	0	4;3	n	0.00	0	6.5	0	6;7	n	0.00	0	9.5	0	3;16	n	0.00	0	4.5	0	3;6	n	0.00	0	9.5	0	4;15	n	0.00	0	5.5	0	3;8	n	0.00	0	4.5	0	8;1	n	ENSMUSG00000009739.18	Pou6f1	chr15	protein_coding	POU domain, class 6, transcription factor 1
novel_NIR_6400	chr15	100489914	100497644	-	100489914	100491854	5pMXE	ENSMUST00000176300.8	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.22	2	7	2	7	y	0.25	1	3	1	3	n	0.00	0	2	0	2	n	ENSMUSG00000009739.18	Pou6f1	chr15	protein_coding	POU domain, class 6, transcription factor 1
novel_NIR_6401	chr15	100489914	100497644	-	100489914;100491946	100491854;100497644	ES	ENSMUST00000073837.13	novel	0.00	0	3.5	0	3;4	n	0.00	0	1.0	0	2;0	n	0.00	0	2.5	0	5;0	n	0.00	0	8.0	0	9;7	n	0.00	0	3.5	0	5;2	n	0.00	0	5.0	0	5;5	n	0.00	0	1.5	0	2;1	n	0.00	0	2.5	0	4;1	n	0.00	0	2.5	0	4;1	n	0.33	2	4.0	2	7;1	y	0.18	1	4.5	1	3;6	n	0.00	0	3.0	0	2;4	n	ENSMUSG00000009739.18	Pou6f1	chr15	protein_coding	POU domain, class 6, transcription factor 1
novel_NIR_6402	chr15	100573354	100576356	-	100573354	100576525	A5SS	ENSMUST00000229869.2	novel	0.00	0	9	0	9	n	0.18	2	9	2	9	y	0.20	1	4	1	4	n	0.10	1	9	1	9	n	0.00	0	12	0	12	n	0.29	2	5	2	5	y	0.00	0	16	0	16	n	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.08	1	11	1	11	n	0.12	1	7	1	7	n	0.00	0	14	0	14	n	ENSMUSG00000023031.9	Cela1	chr15	protein_coding	chymotrypsin-like elastase family, member 1
novel_NIR_6403	chr15	100573354	100576356	-	100573354	100579024	A5SS	ENSMUST00000230572.2	novel	0.00	0	52	0	52	n	0.07	2	28	2	28	n	0.08	1	11	1	11	n	0.03	1	31	1	31	n	0.00	0	22	0	22	n	0.17	2	10	2	10	y	0.00	0	38	0	38	n	0.12	1	7	1	7	n	0.00	0	47	0	47	n	0.03	1	39	1	39	n	0.02	1	46	1	46	n	0.00	0	21	0	21	n	ENSMUSG00000023031.9	Cela1	chr15	protein_coding	chymotrypsin-like elastase family, member 1
novel_NIR_6404	chr15	100579169	100579598	-	100579169	100579675	A5SS	ENSMUST00000230572.2	novel	0.00	0	6	0	6	n	0.17	1	5	1	5	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	5	0	5	n	1.00	2	0	2	0	y	0.11	1	8	1	8	n	0.00	0	9	0	9	n	0.11	1	8	1	8	n	0.00	0	7	0	7	n	ENSMUSG00000023031.9	Cela1	chr15	protein_coding	chymotrypsin-like elastase family, member 1
novel_NIR_6405	chr15	100579169	100579598	-	100579169	100580768	A5SS	ENSMUST00000023775.9	novel	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.25	1	3	1	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.25	2	6	2	6	y	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	ENSMUSG00000023031.9	Cela1	chr15	protein_coding	chymotrypsin-like elastase family, member 1
novel_NIR_6406	chr15	100579169	100579598	-	100579169	100580935	A5SS	ENSMUST00000229235.2	novel	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	4	0	4	n	ENSMUSG00000023031.9	Cela1	chr15	protein_coding	chymotrypsin-like elastase family, member 1
novel_NIR_6407	chr15	100916405	100916938	+	100916405	100921720	A3SS	ENSMUST00000201246.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023033.15	Scn8a	chr15	protein_coding	sodium channel, voltage-gated, type VIII, alpha
novel_NIR_6408	chr15	100916405	100916938	+	100916405	100922142	A3SS	ENSMUST00000082209.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023033.15	Scn8a	chr15	protein_coding	sodium channel, voltage-gated, type VIII, alpha
novel_NIR_6409	chr15	100916405	100916938	+	100916405	100927459	A3SS	ENSMUST00000200963.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000023033.15	Scn8a	chr15	protein_coding	sodium channel, voltage-gated, type VIII, alpha
novel_NIR_6410	chr15	100947895	100976204	-	100952291	100976204	3pMXE	ENSMUST00000213610.2	novel	0.25	2	6	2	6	y	0.00	0	3	0	3	n	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.07	1	13	1	13	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	ENSMUSG00000095440.3	Fignl2	chr15	protein_coding	fidgetin-like 2
novel_NIR_6411	chr15	100952291	100954843	-	100952291	100976204	A5SS	ENSMUST00000213610.2	novel	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	15	0	15	n	0.14	2	12	2	12	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.31	4	9	4	9	y	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	16	0	16	n	0.14	1	6	1	6	n	0.00	0	5	0	5	n	ENSMUSG00000095440.3	Fignl2	chr15	protein_coding	fidgetin-like 2
novel_NIR_6412	chr15	102086221	102086959	-	102086221	102087216	A5SS	ENSMUST00000230288.2	novel	0.14	1	6	1	6	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	33	0	33	n	0.00	0	19	0	19	n	0.14	2	12	2	12	n	0.00	0	17	0	17	n	0.17	1	5	1	5	n	0.15	2	11	2	11	y	0.00	0	9	0	9	n	0.11	1	8	1	8	n	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
novel_NIR_6413	chr15	102088037	102088183	-	102088037	102088406	A5SS	ENSMUST00000231048.2	novel	-	-	-	-	-	-	0.67	2	1	2	1	y	0.22	2	7	2	7	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	5	0	5	n	1.00	1	0	1	0	n	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.17	1	5	1	5	n	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
novel_NIR_6414	chr15	102096107	102096499	-	102096107	102096978	A5SS	ENSMUST00000229938.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
novel_NIR_6415	chr15	102097114	102097188	-	102097114	102110879	A5SS	ENSMUST00000230656.2	novel	0.43	3	4	3	4	y	0.00	0	1	0	1	n	1.00	6	0	6	0	n	-	-	-	-	-	-	0.67	10	5	10	5	y	1.00	3	0	3	0	y	0.22	4	14	4	14	y	1.00	6	0	6	0	y	0.43	3	4	3	4	y	0.67	10	5	10	5	y	0.00	0	1	0	1	n	0.64	9	5	9	5	y	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
novel_NIR_6416	chr15	102097114	102097188	-	102097114	102112574	A5SS	ENSMUST00000229345.2	novel	1.00	3	0	3	0	y	0.00	0	2	0	2	n	1.00	6	0	6	0	y	-	-	-	-	-	-	0.91	10	1	10	1	y	1.00	3	0	3	0	y	0.67	4	2	4	2	y	1.00	6	0	6	0	y	1.00	3	0	3	0	y	0.91	10	1	10	1	y	-	-	-	-	-	-	1.00	9	0	9	0	y	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
novel_NIR_6417	chr15	102097114	102111572	-	102097114	102112574	A5SS	ENSMUST00000229345.2	novel	1.00	1	0	1	0	n	0.60	3	2	3	2	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.60	3	2	3	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.80	4	1	4	1	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
novel_NIR_6418	chr15	102097114	102111572	-	102097114;102111009	102110879;102111572	ES	ENSMUST00000230656.2	novel	0.05	1	20.0	1	4;36	n	0.35	3	5.5	3	1;10	y	0.04	1	26.5	1	0;53	n	0.04	1	21.5	1	0;43	n	0.06	2	33.0	2	5;61	n	0.00	0	13.0	0	0;26	n	0.07	3	42.0	3	14;70	n	0.00	0	18.5	0	0;37	n	0.00	0	23.0	0	4;42	n	0.13	4	27.5	4	5;50	n	0.10	2	19.0	2	1;37	n	0.00	0	28.5	0	5;52	n	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
novel_NIR_6419	chr15	102097114	102111572	-	102097397	102111572	3pMXE	ENSMUST00000230665.2	novel	0.12	1	7	1	7	n	0.38	3	5	3	5	y	0.09	1	10	1	10	n	0.12	1	7	1	7	n	0.15	2	11	2	11	y	0.00	0	7	0	7	n	0.25	3	9	3	9	y	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.20	4	16	4	16	y	0.20	2	8	2	8	y	0.00	0	7	0	7	n	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
novel_NIR_6420	chr15	102097114	102111572	-	102111009	102111572	3pMXE	ENSMUST00000230328.2	novel	0.03	1	36	1	36	n	0.23	3	10	3	10	y	0.02	1	53	1	53	n	0.02	1	43	1	43	n	0.03	2	61	2	61	n	0.00	0	26	0	26	n	0.04	3	70	3	70	n	0.00	0	37	0	37	n	0.00	0	42	0	42	n	0.07	4	50	4	50	n	0.05	2	37	2	37	n	0.00	0	52	0	52	n	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
novel_NIR_6421	chr15	102097397	102097578	-	102097397	102100452	A5SS	ENSMUST00000229470.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	1.00	1	0	1	0	n	1.00	4	0	4	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
novel_NIR_6422	chr15	102097397	102097578	-	102097397	102111572	A5SS	ENSMUST00000229514.2	novel	0.00	0	7	0	7	n	0.17	1	5	1	5	n	0.09	1	10	1	10	n	0.00	0	7	0	7	n	0.08	1	11	1	11	n	0.00	0	7	0	7	n	0.10	1	9	1	9	n	0.14	1	6	1	6	n	0.50	4	4	4	4	y	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
novel_NIR_6423	chr15	102097397	102097578	-	102097397	102112131	A5SS	ENSMUST00000229252.2	novel	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.33	1	2	1	2	n	0.00	0	8	0	8	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.12	1	7	1	7	n	1.00	1	0	1	0	n	0.80	4	1	4	1	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
novel_NIR_6424	chr15	102097397	102097578	-	102097397	102112574	A5SS	ENSMUST00000230687.2	novel	0.00	0	1	0	1	n	0.33	1	2	1	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.20	1	4	1	4	n	0.33	1	2	1	2	n	1.00	4	0	4	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
novel_NIR_6425	chr15	102097397	102098434	-	102097397	102100452	A5SS	ENSMUST00000229470.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
novel_NIR_6426	chr15	102097397	102098434	-	102097397	102111572	A5SS	ENSMUST00000229514.2	novel	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.22	2	7	2	7	y	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
novel_NIR_6427	chr15	102097397	102098434	-	102097397	102112131	A5SS	ENSMUST00000229252.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.20	2	8	2	8	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
novel_NIR_6428	chr15	102097397	102098434	-	102097397	102112574	A5SS	ENSMUST00000230687.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
novel_NIR_6429	chr15	102097397	102109133	-	102097397	102100452	5pMXE	ENSMUST00000229470.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.60	3	2	3	2	y	-	-	-	-	-	-	0.43	3	4	3	4	y	0.67	2	1	2	1	y	0.33	1	2	1	2	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
novel_NIR_6430	chr15	102097397	102109133	-	102097397	102111572	A5SS	ENSMUST00000229514.2	novel	0.00	0	7	0	7	n	0.29	2	5	2	5	y	0.23	3	10	3	10	y	0.00	0	7	0	7	n	0.21	3	11	3	11	y	0.22	2	7	2	7	y	0.10	1	9	1	9	n	0.33	3	6	3	6	y	0.20	1	4	1	4	n	0.06	1	16	1	16	n	0.11	1	8	1	8	n	0.12	1	7	1	7	n	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
novel_NIR_6431	chr15	102097397	102109133	-	102097397	102112131	A5SS	ENSMUST00000229252.2	novel	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.60	3	2	3	2	y	0.00	0	8	0	8	n	0.43	3	4	3	4	y	0.50	2	2	2	2	y	0.12	1	7	1	7	n	1.00	3	0	3	0	y	0.50	1	1	1	1	n	0.25	1	3	1	3	n	0.20	1	4	1	4	n	0.14	1	6	1	6	n	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
novel_NIR_6432	chr15	102097397	102109133	-	102097397	102112574	A5SS	ENSMUST00000230687.2	novel	0.00	0	1	0	1	n	0.50	2	2	2	2	y	1.00	3	0	3	0	y	-	-	-	-	-	-	0.60	3	2	3	2	y	1.00	2	0	2	0	y	0.20	1	4	1	4	n	0.60	3	2	3	2	y	1.00	1	0	1	0	n	0.33	1	2	1	2	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
novel_NIR_6433	chr15	102097397	102111739	-	102097397	102100452	5pMXE	ENSMUST00000229470.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.33	2	4	2	4	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
novel_NIR_6434	chr15	102097397	102111739	-	102097397	102111572	A5SS&ES	ENSMUST00000229514.2	novel	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.15	2	11	2	11	y	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.14	1	6	1	6	n	0.00	0	4	0	4	n	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
novel_NIR_6435	chr15	102097397	102111739	-	102097397	102112131	A5SS	ENSMUST00000229252.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.00	0	7	0	7	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
novel_NIR_6436	chr15	102097397	102111739	-	102097397	102112574	A5SS	ENSMUST00000230687.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
novel_NIR_6437	chr15	102097397	102111820	-	102097397	102100452	5pMXE	ENSMUST00000229470.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
novel_NIR_6438	chr15	102097397	102111820	-	102097397	102111572	A5SS&ES	ENSMUST00000229514.2	novel	0.22	2	7	2	7	y	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
novel_NIR_6439	chr15	102097397	102111820	-	102097397	102112131	A5SS	ENSMUST00000229252.2	novel	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
novel_NIR_6440	chr15	102097397	102111820	-	102097397	102112574	A5SS	ENSMUST00000230687.2	novel	0.67	2	1	2	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
novel_NIR_6441	chr15	102109218	102110879	-	102097114	102110879	A3SS	ENSMUST00000230656.2	novel	0.00	0	4	0	4	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	14	0	14	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.29	2	5	2	5	y	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
novel_NIR_6442	chr15	102109218	102110879	-	102109517	102110879	3pMXE	ENSMUST00000230895.2	novel	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.40	2	3	2	3	y	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
novel_NIR_6443	chr15	102111009	102111562	-	102111009	102112574	A5SS	ENSMUST00000230895.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
novel_NIR_6444	chr15	102111009	102112131	-	102097397	102112131	A3SS	ENSMUST00000229252.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
novel_NIR_6445	chr15	102111009	102112131	-	102111009	102112574	A5SS	ENSMUST00000230895.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
novel_NIR_6446	chr15	102113740	102115146	+	102113740	102116206	A3SS	ENSMUST00000118729.8	novel	0.15	2	11	2	11	y	0.00	0	9	0	9	n	0.04	1	23	1	23	n	0.00	0	14	0	14	n	0.00	0	19	0	19	n	0.00	0	8	0	8	n	0.00	0	30	0	30	n	0.20	2	8	2	8	y	0.00	0	8	0	8	n	0.00	0	19	0	19	n	0.00	0	12	0	12	n	0.00	0	21	0	21	n	ENSMUSG00000046897.18	Zfp740	chr15	protein_coding	zinc finger protein 740
novel_NIR_6447	chr15	102144652	102147240	-	102144658	102147240	A3SS	ENSMUST00000043172.15	novel	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	18	0	18	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.16	3	16	3	16	y	0.00	0	14	0	14	n	0.00	0	11	0	11	n	ENSMUSG00000001288.16	Rarg	chr15	protein_coding	retinoic acid receptor, gamma
novel_NIR_6448	chr15	102150419	102152007	-	102150419	102151648	A5SS	ENSMUST00000130204.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000001288.16	Rarg	chr15	protein_coding	retinoic acid receptor, gamma
novel_NIR_6449	chr15	102150419	102152007	-	102150419	102153398	A5SS	ENSMUST00000124224.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000001288.16	Rarg	chr15	protein_coding	retinoic acid receptor, gamma
novel_NIR_6450	chr15	102150419	102152007	-	102150419	102154495	A5SS	ENSMUST00000063339.14	novel	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.20	2	8	2	8	y	ENSMUSG00000001288.16	Rarg	chr15	protein_coding	retinoic acid receptor, gamma
novel_NIR_6451	chr15	102150419	102152007	-	102150419	102158713	A5SS	ENSMUST00000155563.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000001288.16	Rarg	chr15	protein_coding	retinoic acid receptor, gamma
novel_NIR_6452	chr15	102150419	102152007	-	102150419	102160854	A5SS	ENSMUST00000043172.15	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	ENSMUSG00000001288.16	Rarg	chr15	protein_coding	retinoic acid receptor, gamma
novel_NIR_6453	chr15	102234920	102235253	+	102234695	102235253	A5SS	ENSMUST00000062492.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000001289.13	Pfdn5	chr15	protein_coding	prefoldin 5
novel_NIR_6454	chr15	102234920	102236957	+	102234695	102236957	A5SS	ENSMUST00000170627.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000001289.13	Pfdn5	chr15	protein_coding	prefoldin 5
novel_NIR_6455	chr15	102234920	102236957	+	102234970	102236957	A5SS	ENSMUST00000001335.7	novel	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.25	2	6	2	6	y	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.08	1	11	1	11	n	0.00	0	10	0	10	n	ENSMUSG00000001289.13	Pfdn5	chr15	protein_coding	prefoldin 5
novel_NIR_6456	chr15	102240637	102240961	+	102240637	102242617	A3SS	ENSMUST00000170078.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000001285.13	Myg1	chr15	protein_coding	melanocyte proliferating gene 1
novel_NIR_6457	chr15	102240637	102240966	+	102240637	102242617	A3SS	ENSMUST00000170078.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000001285.13	Myg1	chr15	protein_coding	melanocyte proliferating gene 1
novel_NIR_6458	chr15	102240637	102242648	+	102240637	102242617	A3SS	ENSMUST00000170078.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000001285.13	Myg1	chr15	protein_coding	melanocyte proliferating gene 1
novel_NIR_6459	chr15	102242796	102244029	+	102242796	102245536	A3SS	ENSMUST00000001331.13	novel	1.00	1	0	1	0	n	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000001285.13	Myg1	chr15	protein_coding	melanocyte proliferating gene 1
novel_NIR_6460	chr15	10224893	10293737	+	10213837	10293737	A5SS	ENSMUST00000138135.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000005268.21	Prlr	chr15	protein_coding	prolactin receptor
novel_NIR_6461	chr15	10224893	10293737	+	10216209	10293737	A5SS	ENSMUST00000130720.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000005268.21	Prlr	chr15	protein_coding	prolactin receptor
novel_NIR_6462	chr15	10224893	10293737	+	10249735	10293737	5pMXE	ENSMUST00000134410.8	novel	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	15	0	15	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.25	2	6	2	6	y	0.00	0	3	0	3	n	0.00	0	12	0	12	n	ENSMUSG00000005268.21	Prlr	chr15	protein_coding	prolactin receptor
novel_NIR_6463	chr15	102359653	102360584	+	102355896	102360584	A5SS	ENSMUST00000023809.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000023047.12	Amhr2	chr15	protein_coding	anti-Mullerian hormone type 2 receptor
novel_NIR_6464	chr15	102377831	102381696	+	102379572	102381696	5pMXE	ENSMUST00000229222.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000056851.15	Pcbp2	chr15	protein_coding	poly(rC) binding protein 2
novel_NIR_6465	chr15	102397233	102398190	+	102396712	102398190	A5SS	ENSMUST00000231089.2	novel	0.00	0	14	0	14	n	0.14	2	12	2	12	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	17	0	17	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.25	3	9	3	9	y	0.00	0	8	0	8	n	0.00	0	10	0	10	n	ENSMUSG00000056851.15	Pcbp2	chr15	protein_coding	poly(rC) binding protein 2
novel_NIR_6466	chr15	102429012	102429323	+	102429012	102429573	A3SS	ENSMUST00000154948.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.50	1	1	1	1	n	0.00	0	7	0	7	n	ENSMUSG00000023051.12	Tarbp2	chr15	protein_coding	TARBP2, RISC loading complex RNA binding subunit
novel_NIR_6467	chr15	102458540	102459839	-	102456307	102459839	A3SS	ENSMUST00000184772.2	novel	0.00	0	14	0	14	n	0.00	0	14	0	14	n	0.03	1	33	1	33	n	0.00	0	19	0	19	n	0.00	0	19	0	19	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	19	0	19	n	0.17	2	10	2	10	y	0.00	0	22	0	22	n	0.17	1	5	1	5	n	0.00	0	22	0	22	n	ENSMUSG00000052414.10	Gm28047	chr15	protein_coding	predicted gene, 28047
novel_NIR_6468	chr15	102471845	102533797	-	102471845	102502107	A5SS&ES	ENSMUST00000184485.8	novel	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.05	1	19	1	19	n	0.00	0	19	0	19	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.22	2	7	2	7	y	0.00	0	16	0	16	n	0.00	0	16	0	16	n	0.00	0	12	0	12	n	ENSMUSG00000099083.8	Atf7	chr15	protein_coding	activating transcription factor 7
novel_NIR_6469	chr15	102471845	102533797	-	102471845;102502175	102502107;102533797	ES	ENSMUST00000184616.8	novel	0.00	0	5.0	0	9;1	n	0.00	0	4.0	0	6;2	n	0.08	1	12.0	1	19;5	n	0.00	0	13.0	0	19;7	n	0.00	0	6.5	0	8;5	n	0.00	0	4.0	0	7;1	n	0.00	0	3.5	0	5;2	n	0.00	0	6.0	0	11;1	n	0.29	2	5.0	2	7;3	y	0.00	0	11.5	0	16;7	n	0.00	0	10.0	0	16;4	n	0.00	0	8.5	0	12;5	n	ENSMUSG00000099083.8	Atf7	chr15	protein_coding	activating transcription factor 7
novel_NIR_6470	chr15	102471845	102533797	-	102502175	102533797	A3SS&ES	ENSMUST00000185070.8	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	ENSMUSG00000099083.8	Atf7	chr15	protein_coding	activating transcription factor 7
novel_NIR_6471	chr15	10248991	10293737	+	10213837	10293737	A5SS	ENSMUST00000138135.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000005268.21	Prlr	chr15	protein_coding	prolactin receptor
novel_NIR_6472	chr15	10248991	10293737	+	10216209	10293737	A5SS	ENSMUST00000130720.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000005268.21	Prlr	chr15	protein_coding	prolactin receptor
novel_NIR_6473	chr15	10248991	10293737	+	10249735	10293737	5pMXE	ENSMUST00000134410.8	novel	0.20	2	8	2	8	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	15	0	15	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	ENSMUSG00000005268.21	Prlr	chr15	protein_coding	prolactin receptor
novel_NIR_6474	chr15	102576214	102577990	-	102576214	102580159	A5SS	ENSMUST00000186952.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	ENSMUSG00000062683.12	Atp5g2	chr15	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)
novel_NIR_6475	chr15	103121681	103148184	-	103121681	103123695	5pMXE	ENSMUST00000108813.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000009575.15	Cbx5	chr15	protein_coding	chromobox 5
novel_NIR_6476	chr15	103123548	103123691	-	103123548	103123695	A5SS	ENSMUST00000122182.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000009575.15	Cbx5	chr15	protein_coding	chromobox 5
novel_NIR_6477	chr15	103123548	103148160	-	103121681	103148160	A3SS	ENSMUST00000118152.8	novel	0.16	4	21	4	21	y	0.00	0	18	0	18	n	0.07	2	25	2	25	n	0.00	0	33	0	33	n	0.19	5	22	5	22	y	0.06	1	15	1	15	n	0.12	3	23	3	23	n	0.00	0	13	0	13	n	0.21	3	11	3	11	y	0.04	1	27	1	27	n	0.08	2	23	2	23	n	0.00	0	22	0	22	n	ENSMUSG00000009575.15	Cbx5	chr15	protein_coding	chromobox 5
novel_NIR_6478	chr15	103123548	103148160	-	103123548	103123695	5pMXE	ENSMUST00000122182.2	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	1	0	1	0	n	0.43	3	4	3	4	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000009575.15	Cbx5	chr15	protein_coding	chromobox 5
novel_NIR_6479	chr15	10314359	10315730	+	10314359	10317594	A3SS	ENSMUST00000145428.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	8	0	8	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000005268.21	Prlr	chr15	protein_coding	prolactin receptor
novel_NIR_6480	chr15	10314359;10315793	10315730;10317589	+	10314359	10317589	cassetteExon	ENSMUST00000005400.13	novel	0.00	0.0	135	0;0	135	n	0.01	1.0	107	2;0	107	n	0.00	0.0	9	0;0	9	n	0.01	1.5	132	1;2	132	n	0.00	0.0	114	0;0	114	n	0.22	2.0	7	2;2	7	y	0.00	0.0	114	0;0	114	n	0.00	0.0	20	0;0	20	n	0.00	0.0	131	0;0	131	n	0.00	0.5	218	0;1	218	n	0.00	0.0	161	0;0	161	n	0.00	0.0	265	0;0	265	n	ENSMUSG00000005268.21	Prlr	chr15	protein_coding	prolactin receptor
novel_NIR_6481	chr15	103199187	103199756	+	103199335	103199756	A5SS	ENSMUST00000229549.2	novel	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	ENSMUSG00000060992.10	Copz1	chr15	protein_coding	coatomer protein complex, subunit zeta 1
novel_NIR_6482	chr15	103228827	103229497	-	103228827	103231818	A5SS	ENSMUST00000229551.2	novel	0.08	2	22	2	22	n	0.00	0	10	0	10	n	0.17	5	25	5	25	n	0.17	7	33	7	33	y	0.29	14	35	14	35	n	0.10	1	9	1	9	n	0.16	5	26	5	26	n	0.08	2	24	2	24	n	0.19	5	21	5	21	n	0.04	1	23	1	23	n	0.07	2	25	2	25	n	0.32	9	19	9	19	n	ENSMUSG00000000552.11	Zfp385a	chr15	protein_coding	zinc finger protein 385A
novel_NIR_6483	chr15	103228827	103229497	-	103228827	103241492	A5SS	ENSMUST00000229373.2	novel	0.12	2	14	2	14	n	0.00	0	6	0	6	n	0.45	5	6	5	6	y	0.50	7	7	7	7	y	0.56	14	11	14	11	n	0.25	1	3	1	3	n	0.28	5	13	5	13	y	0.40	2	3	2	3	y	0.45	5	6	5	6	y	0.14	1	6	1	6	n	0.17	2	10	2	10	y	0.50	9	9	9	9	y	ENSMUSG00000000552.11	Zfp385a	chr15	protein_coding	zinc finger protein 385A
novel_NIR_6484	chr15	103228827;103229615	103229497;103231818	-	103228827	103231818	cassetteExon	ENSMUST00000229551.2	novel	0.10	2.5	22	2;3	22	n	0.09	1.0	10	0;2	10	n	0.15	4.5	25	5;4	25	y	0.10	3.5	33	7;0	33	n	0.21	9.5	35	14;5	35	y	0.10	1.0	9	1;1	9	n	0.15	4.5	26	5;4	26	y	0.08	2.0	24	2;2	24	n	0.14	3.5	21	5;2	21	n	0.06	1.5	23	1;2	23	n	0.06	1.5	25	2;1	25	n	0.24	6.0	19	9;3	19	y	ENSMUSG00000000552.11	Zfp385a	chr15	protein_coding	zinc finger protein 385A
novel_NIR_6485	chr15	103229615	103231818	-	103228827	103231818	A3SS	ENSMUST00000229551.2	novel	0.12	3	22	3	22	n	0.17	2	10	2	10	y	0.14	4	25	4	25	n	0.00	0	33	0	33	n	0.12	5	35	5	35	n	0.10	1	9	1	9	n	0.13	4	26	4	26	n	0.08	2	24	2	24	n	0.09	2	21	2	21	n	0.08	2	23	2	23	n	0.04	1	25	1	25	n	0.14	3	19	3	19	n	ENSMUSG00000000552.11	Zfp385a	chr15	protein_coding	zinc finger protein 385A
novel_NIR_6486	chr15	103241628	103241944	-	103241628	103242658	A5SS	ENSMUST00000229373.2	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.50	1	1	1	1	n	0.75	3	1	3	1	y	ENSMUSG00000000552.11	Zfp385a	chr15	protein_coding	zinc finger protein 385A
novel_NIR_6487	chr15	103241628	103241944	-	103241628	103248474	A5SS	ENSMUST00000168828.3	novel	0.12	1	7	1	7	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	2	4	2	4	y	0.17	1	5	1	5	n	0.43	3	4	3	4	y	ENSMUSG00000000552.11	Zfp385a	chr15	protein_coding	zinc finger protein 385A
novel_NIR_6488	chr15	10326631	10333088	+	10326631	10328367	3pMXE	ENSMUST00000005400.13	novel	0.06	1	15	1	15	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	14	0	14	n	0.09	1	10	1	10	n	0.00	0	1	0	1	n	0.17	3	15	3	15	y	0.00	0	4	0	4	n	0.07	1	13	1	13	n	0.13	2	13	2	13	n	0.11	1	8	1	8	n	0.00	0	15	0	15	n	ENSMUSG00000005268.21	Prlr	chr15	protein_coding	prolactin receptor
novel_NIR_6489	chr15	10326631	10333088	+	10326631	10341860	A3SS	ENSMUST00000145428.8	novel	0.09	1	10	1	10	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	11	0	11	n	0.14	1	6	1	6	n	-	-	-	-	-	-	0.15	3	17	3	17	y	0.00	0	2	0	2	n	0.06	1	17	1	17	n	0.12	2	15	2	15	n	0.06	1	16	1	16	n	0.00	0	20	0	20	n	ENSMUSG00000005268.21	Prlr	chr15	protein_coding	prolactin receptor
novel_NIR_6490	chr15	10326631	10333088	+	10326631	10345744	A3SS	ENSMUST00000148257.8	novel	0.17	1	5	1	5	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	5	0	5	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.60	3	2	3	2	y	-	-	-	-	-	-	0.33	1	2	1	2	n	0.29	2	5	2	5	y	0.17	1	5	1	5	n	0.00	0	5	0	5	n	ENSMUSG00000005268.21	Prlr	chr15	protein_coding	prolactin receptor
novel_NIR_6491	chr15	10326631	10333088	+	10326631	10371685	A3SS	ENSMUST00000157020.2	novel	0.20	1	4	1	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.60	3	2	3	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.67	2	1	2	1	y	0.50	1	1	1	1	n	0.00	0	3	0	3	n	ENSMUSG00000094814.2	Gm21973	chr15	protein_coding	predicted gene 21973
novel_NIR_6492	chr15	10326631	10338814	+	10326631	10328367	3pMXE	ENSMUST00000005400.13	novel	0.06	1	15	1	15	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.00	0	15	0	15	n	0.00	0	4	0	4	n	0.24	4	13	4	13	y	0.00	0	13	0	13	n	0.20	2	8	2	8	y	0.00	0	15	0	15	n	ENSMUSG00000005268.21	Prlr	chr15	protein_coding	prolactin receptor
novel_NIR_6493	chr15	10326631	10338814	+	10326631	10341860	A3SS	ENSMUST00000145428.8	novel	0.09	1	10	1	10	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	11	0	11	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	17	0	17	n	0.00	0	2	0	2	n	0.19	4	17	4	17	y	0.00	0	15	0	15	n	0.11	2	16	2	16	n	0.00	0	20	0	20	n	ENSMUSG00000005268.21	Prlr	chr15	protein_coding	prolactin receptor
novel_NIR_6494	chr15	10326631	10338814	+	10326631	10345744	A3SS	ENSMUST00000148257.8	novel	0.17	1	5	1	5	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	4	2	4	2	y	0.00	0	5	0	5	n	0.29	2	5	2	5	y	0.00	0	5	0	5	n	ENSMUSG00000005268.21	Prlr	chr15	protein_coding	prolactin receptor
novel_NIR_6495	chr15	10326631	10338814	+	10326631	10371685	A3SS	ENSMUST00000157020.2	novel	0.20	1	4	1	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	4	0	4	0	y	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	3	0	3	n	ENSMUSG00000094814.2	Gm21973	chr15	protein_coding	predicted gene 21973
novel_NIR_6496	chr15	10326631	10342048	+	10326631	10328367	3pMXE	ENSMUST00000005400.13	novel	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.00	0	15	0	15	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.00	0	13	0	13	n	0.20	2	8	2	8	y	0.00	0	15	0	15	n	ENSMUSG00000005268.21	Prlr	chr15	protein_coding	prolactin receptor
novel_NIR_6497	chr15	10326631	10342048	+	10326631	10345744	A3SS	ENSMUST00000148257.8	novel	0.00	0	5	0	5	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.29	2	5	2	5	y	0.00	0	5	0	5	n	ENSMUSG00000005268.21	Prlr	chr15	protein_coding	prolactin receptor
novel_NIR_6498	chr15	10326631	10342048	+	10326631	10371685	A3SS	ENSMUST00000157020.2	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	3	0	3	n	ENSMUSG00000094814.2	Gm21973	chr15	protein_coding	predicted gene 21973
novel_NIR_6499	chr15	10326631	10371688	+	10326631	10328367	3pMXE	ENSMUST00000005400.13	novel	0.21	4	15	4	15	y	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.00	0	15	0	15	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.24	4	13	4	13	y	0.00	0	8	0	8	n	0.00	0	15	0	15	n	ENSMUSG00000005268.21	Prlr	chr15	protein_coding	prolactin receptor
novel_NIR_6500	chr15	10326631	10371688	+	10326631	10341860	3pMXE	ENSMUST00000128450.8	novel	0.29	4	10	4	10	y	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	11	0	11	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	17	0	17	n	0.00	0	2	0	2	n	0.00	0	17	0	17	n	0.21	4	15	4	15	y	0.00	0	16	0	16	n	0.00	0	20	0	20	n	ENSMUSG00000005268.21	Prlr	chr15	protein_coding	prolactin receptor
novel_NIR_6501	chr15	10326631	10371688	+	10326631	10345744	3pMXE	ENSMUST00000148257.8	novel	0.44	4	5	4	5	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.44	4	5	4	5	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	ENSMUSG00000005268.21	Prlr	chr15	protein_coding	prolactin receptor
novel_NIR_6502	chr15	10326631	10371688	+	10326631	10371685	A3SS	ENSMUST00000157020.2	novel	0.50	4	4	4	4	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.80	4	1	4	1	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000094814.2	Gm21973	chr15	protein_coding	predicted gene 21973
novel_NIR_6503	chr15	10342110	10371685	+	10326631	10371685	A5SS	ENSMUST00000157020.2	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000094814.2	Gm21973	chr15	protein_coding	predicted gene 21973
novel_NIR_6504	chr15	10342110	10371685	+	10342110	10346496	3pMXE	ENSMUST00000145428.8	novel	0.00	0	8	0	8	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	ENSMUSG00000005268.21	Prlr	chr15	protein_coding	prolactin receptor
novel_NIR_6505	chr15	103435519	103435979	+	103435519	103435972	A3SS	ENSMUST00000023132.5	novel	0.60	3	2	3	2	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	ENSMUSG00000022489.7	Pde1b	chr15	protein_coding	phosphodiesterase 1B, Ca2+-calmodulin dependent
novel_NIR_6506	chr15	10346706	10371685	+	10326631	10371685	A5SS	ENSMUST00000157020.2	novel	0.00	0	4	0	4	n	0.80	4	1	4	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	ENSMUSG00000094814.2	Gm21973	chr15	protein_coding	predicted gene 21973
novel_NIR_6507	chr15	10358767	10371688	+	10358767	10371685	A3SS	ENSMUST00000110540.8	novel	0.21	53	196	53	196	y	0.26	51	146	51	146	y	0.22	54	187	54	187	y	0.21	64	246	64	246	y	0.28	124	313	124	313	y	0.29	52	127	52	127	y	0.26	98	277	98	277	y	0.28	72	183	72	183	y	0.26	72	207	72	207	y	0.26	101	291	101	291	y	0.31	76	167	76	167	y	0.24	89	285	89	285	y	ENSMUSG00000089678.9	Agxt2	chr15	protein_coding	alanine-glyoxylate aminotransferase 2
novel_NIR_6508	chr15	10358861	10371685	+	10326631	10371685	A5SS	ENSMUST00000157020.2	novel	0.33	2	4	2	4	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.60	3	2	3	2	y	-	-	-	-	-	-	1.00	2	0	2	0	y	0.75	3	1	3	1	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000094814.2	Gm21973	chr15	protein_coding	predicted gene 21973
novel_NIR_6509	chr15	10365135	10371685	+	10326631	10371685	A5SS	ENSMUST00000157020.2	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	ENSMUSG00000094814.2	Gm21973	chr15	protein_coding	predicted gene 21973
novel_NIR_6510	chr15	10373954	10376253	+	10373954	10374082	3pMXE	ENSMUST00000110540.8	novel	0.69	36	16	36	16	y	0.64	27	15	27	15	y	0.80	83	21	83	21	y	0.78	54	15	54	15	y	0.70	66	28	66	28	y	0.79	45	12	45	12	y	0.61	46	29	46	29	y	0.72	55	21	55	21	y	0.57	35	26	35	26	y	0.65	40	22	40	22	y	0.58	29	21	29	21	y	0.49	47	48	47	48	y	ENSMUSG00000089678.9	Agxt2	chr15	protein_coding	alanine-glyoxylate aminotransferase 2
novel_NIR_6511	chr15	10373954	10376253	+	10373954	10377461	A3SS	ENSMUST00000110541.8	novel	0.23	36	123	36	123	y	0.20	27	110	27	110	y	0.47	83	92	83	92	y	0.20	54	218	54	218	y	0.22	66	230	66	230	y	0.38	45	75	45	75	y	0.20	46	180	46	180	y	0.34	55	105	55	105	y	0.20	35	144	35	144	y	0.15	40	227	40	227	y	0.17	29	137	29	137	y	0.17	47	225	47	225	y	ENSMUSG00000089678.9	Agxt2	chr15	protein_coding	alanine-glyoxylate aminotransferase 2
novel_NIR_6512	chr15	10381513	10388217	+	10381541	10388217	A5SS	ENSMUST00000022858.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000089678.9	Agxt2	chr15	protein_coding	alanine-glyoxylate aminotransferase 2
novel_NIR_6513	chr15	10599870	10603037	-	10599870	10610091	A5SS	ENSMUST00000090339.11	novel	0.06	1	15	1	15	n	0.19	3	13	3	13	y	0.02	1	46	1	46	n	0.12	3	21	3	21	n	0.00	0	54	0	54	n	0.07	1	14	1	14	n	0.09	2	20	2	20	n	0.03	1	37	1	37	n	0.11	3	25	3	25	n	0.02	1	41	1	41	n	0.18	3	14	3	14	y	0.07	1	13	1	13	n	ENSMUSG00000022246.15	Rai14	chr15	protein_coding	retinoic acid induced 14
novel_NIR_6514	chr15	10690538	10715292	-	10690538	10713432	5pMXE	ENSMUST00000090339.11	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022246.15	Rai14	chr15	protein_coding	retinoic acid induced 14
novel_NIR_6515	chr15	10690538	10715292	-	10690538	10714080	5pMXE	ENSMUST00000227506.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022246.15	Rai14	chr15	protein_coding	retinoic acid induced 14
novel_NIR_6516	chr15	10690538	10715292	-	10690538	10714609	5pMXE	ENSMUST00000169385.3	novel	0.14	3	19	3	19	n	0.00	0	6	0	6	n	0.00	0	33	0	33	n	0.00	0	11	0	11	n	0.00	0	30	0	30	n	0.00	0	5	0	5	n	0.00	0	23	0	23	n	0.05	1	18	1	18	n	0.00	0	9	0	9	n	0.24	4	13	4	13	y	0.00	0	13	0	13	n	0.00	0	9	0	9	n	ENSMUSG00000022246.15	Rai14	chr15	protein_coding	retinoic acid induced 14
novel_NIR_6517	chr15	10690538	10715629	-	10690538	10713432	5pMXE	ENSMUST00000090339.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000022246.15	Rai14	chr15	protein_coding	retinoic acid induced 14
novel_NIR_6518	chr15	10690538	10715629	-	10690538	10714080	5pMXE	ENSMUST00000227506.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000022246.15	Rai14	chr15	protein_coding	retinoic acid induced 14
novel_NIR_6519	chr15	10690538	10715629	-	10690538	10714609	5pMXE	ENSMUST00000169385.3	novel	0.00	0	19	0	19	n	0.00	0	6	0	6	n	0.00	0	33	0	33	n	0.00	0	11	0	11	n	0.00	0	30	0	30	n	0.29	2	5	2	5	y	0.00	0	23	0	23	n	0.00	0	18	0	18	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.07	1	13	1	13	n	0.00	0	9	0	9	n	ENSMUSG00000022246.15	Rai14	chr15	protein_coding	retinoic acid induced 14
novel_NIR_6520	chr15	10715106	10716734	+	10715066	10716734	A5SS	ENSMUST00000180604.2	novel	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.05	1	18	1	18	n	0.00	0	10	0	10	n	0.00	0	17	0	17	n	0.12	1	7	1	7	n	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.18	3	14	3	14	y	0.00	0	4	0	4	n	ENSMUSG00000096971.3	4930556M19Rik	chr15	lncRNA	RIKEN cDNA 4930556M19 gene
novel_NIR_6521	chr15	10715106	10716734	+	10715090	10716734	A5SS	ENSMUST00000227872.2	novel	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.10	1	9	1	9	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.07	1	13	1	13	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.50	3	3	3	3	y	0.00	0	9	0	9	n	ENSMUSG00000096971.3	4930556M19Rik	chr15	lncRNA	RIKEN cDNA 4930556M19 gene
novel_NIR_6522	chr15	10716804	10719045	+	10716804	10718340	3pMXE	ENSMUST00000226989.2	novel	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.17	2	10	2	10	y	0.00	0	10	0	10	n	0.00	0	20	0	20	n	0.00	0	6	0	6	n	0.21	3	11	3	11	y	0.11	1	8	1	8	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	ENSMUSG00000096971.3	4930556M19Rik	chr15	lncRNA	RIKEN cDNA 4930556M19 gene
novel_NIR_6523	chr15	10716804	10719045	+	10716804	10719150	A3SS	ENSMUST00000228061.2	novel	0.00	0	5	0	5	n	-	-	-	-	-	-	0.20	2	8	2	8	y	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.27	3	8	3	8	y	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	ENSMUSG00000096971.3	4930556M19Rik	chr15	lncRNA	RIKEN cDNA 4930556M19 gene
novel_NIR_6524	chr15	10716804	10719045	+	10716804	10767521	A3SS	ENSMUST00000226304.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000096971.3	4930556M19Rik	chr15	lncRNA	RIKEN cDNA 4930556M19 gene
novel_NIR_6525	chr15	10716860	10718340	+	10716804	10718340	A5SS	ENSMUST00000226989.2	novel	0.38	3	5	3	5	y	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.05	1	20	1	20	n	0.00	0	6	0	6	n	0.27	4	11	4	11	y	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	ENSMUSG00000096971.3	4930556M19Rik	chr15	lncRNA	RIKEN cDNA 4930556M19 gene
novel_NIR_6526	chr15	10716860	10718340	+	10716860	10767521	A3SS	ENSMUST00000180604.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000096971.3	4930556M19Rik	chr15	lncRNA	RIKEN cDNA 4930556M19 gene
novel_NIR_6527	chr15	10716860	10719045	+	10716860	10767521	A3SS	ENSMUST00000180604.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000096971.3	4930556M19Rik	chr15	lncRNA	RIKEN cDNA 4930556M19 gene
novel_NIR_6528	chr15	10716860	10719150	+	10716804	10719150	A5SS	ENSMUST00000228061.2	novel	0.44	4	5	4	5	y	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.29	4	10	4	10	y	0.00	0	11	0	11	n	0.38	5	8	5	8	y	0.14	1	6	1	6	n	0.38	3	5	3	5	y	0.12	1	7	1	7	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	ENSMUSG00000096971.3	4930556M19Rik	chr15	lncRNA	RIKEN cDNA 4930556M19 gene
novel_NIR_6529	chr15	10716860	10719150	+	10716860	10767521	A3SS	ENSMUST00000180604.2	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000096971.3	4930556M19Rik	chr15	lncRNA	RIKEN cDNA 4930556M19 gene
novel_NIR_6530	chr15	10718460	10719150	+	10716804	10719150	A5SS	ENSMUST00000228061.2	novel	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.29	4	10	4	10	y	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	ENSMUSG00000096971.3	4930556M19Rik	chr15	lncRNA	RIKEN cDNA 4930556M19 gene
novel_NIR_6531	chr15	10718649	10719150	+	10716804	10719150	A5SS	ENSMUST00000228061.2	novel	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.11	1	8	1	8	n	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.22	2	7	2	7	y	0.00	0	6	0	6	n	0.00	0	6	0	6	n	ENSMUSG00000096971.3	4930556M19Rik	chr15	lncRNA	RIKEN cDNA 4930556M19 gene
novel_NIR_6532	chr15	11993947	11996033	-	11993947	11995714	5pMXE	ENSMUST00000134414.2	novel	1.00	10	0	10	0	y	1.00	8	0	8	0	y	1.00	9	0	9	0	y	1.00	6	0	6	0	y	1.00	11	0	11	0	y	1.00	3	0	3	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	19	0	19	0	y	1.00	8	0	8	0	y	1.00	9	0	9	0	y	ENSMUSG00000022205.16	Sub1	chr15	protein_coding	SUB1 homolog, transcriptional regulator
novel_NIR_6533	chr15	11993947	11996033	-	11993947	11996957	A5SS	ENSMUST00000110504.2	novel	1.00	10	0	10	0	y	1.00	8	0	8	0	y	1.00	9	0	9	0	y	1.00	6	0	6	0	y	1.00	11	0	11	0	y	1.00	3	0	3	0	y	1.00	6	0	6	0	y	0.00	0	1	0	1	n	1.00	4	0	4	0	y	1.00	19	0	19	0	y	1.00	8	0	8	0	y	1.00	9	0	9	0	y	ENSMUSG00000022205.16	Sub1	chr15	protein_coding	SUB1 homolog, transcriptional regulator
novel_NIR_6534	chr15	12118424	12135353	+	12118424	12122093	3pMXE	ENSMUST00000124621.2	novel	0.75	3	1	3	1	y	1.00	1	0	1	0	n	0.75	3	1	3	1	y	1.00	2	0	2	0	y	1.00	6	0	6	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000022201.17	Zfr	chr15	protein_coding	zinc finger RNA binding protein
novel_NIR_6535	chr15	12118424	12135353	+	12118424	12136482	A3SS	ENSMUST00000122941.8	novel	0.27	3	8	3	8	y	0.17	1	5	1	5	n	0.09	3	32	3	32	n	0.20	2	8	2	8	y	0.19	6	26	6	26	y	0.24	5	16	5	16	y	0.00	0	16	0	16	n	0.08	1	11	1	11	n	0.10	1	9	1	9	n	0.22	4	14	4	14	y	0.27	3	8	3	8	y	0.00	0	14	0	14	n	ENSMUSG00000022201.17	Zfr	chr15	protein_coding	zinc finger RNA binding protein
novel_NIR_6536	chr15	12118424	12135353	+	12118427	12135353	A5SS	ENSMUST00000134277.2	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	6	0	6	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000022201.17	Zfr	chr15	protein_coding	zinc finger RNA binding protein
novel_NIR_6537	chr15	12232987	12236104	+	12232987;12234012	12233940;12236104	ES	ENSMUST00000038172.16	novel	0.00	0	7.5	0	8;7	n	0.00	0	4.0	0	3;5	n	0.00	0	20.0	0	16;24	n	0.00	0	13.0	0	17;9	n	0.23	3	10.0	3	11;9	y	0.00	0	4.0	0	4;4	n	0.00	0	5.0	0	6;4	n	0.10	1	9.5	1	11;8	n	0.00	0	5.5	0	6;5	n	0.00	0	12.5	0	13;12	n	0.00	0	6.0	0	6;6	n	0.00	0	6.5	0	3;10	n	ENSMUSG00000039458.16	Mtmr12	chr15	protein_coding	myotubularin related protein 12
novel_NIR_6538	chr15	12322042	12343123	+	12322042	12349454	A3SS	ENSMUST00000226517.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.30	3	7	3	7	y	0.57	4	3	4	3	y	0.80	4	1	4	1	y	0.80	8	2	8	2	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.25	2	6	2	6	y	0.33	3	6	3	6	y	ENSMUSG00000022200.9	Golph3	chr15	protein_coding	golgi phosphoprotein 3
novel_NIR_6539	chr15	12343237	12345647	+	12343237	12343359	3pMXE	ENSMUST00000228301.2	novel	0.12	1	7	1	7	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.25	3	9	3	9	y	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	ENSMUSG00000022200.9	Golph3	chr15	protein_coding	golgi phosphoprotein 3
novel_NIR_6540	chr15	12343407	12345647	+	12343407	12349454	A3SS	ENSMUST00000228671.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	ENSMUSG00000022200.9	Golph3	chr15	protein_coding	golgi phosphoprotein 3
novel_NIR_6541	chr15	12813340	12814277	-	12813786	12814277	A3SS	ENSMUST00000227821.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.60	3	2	3	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022195.8	6030458C11Rik	chr15	protein_coding	RIKEN cDNA 6030458C11 gene
novel_NIR_6542	chr15	12830522	12833915	+	12827378	12833915	A5SS	ENSMUST00000169061.8	novel	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.07	1	14	1	14	n	0.20	4	16	4	16	y	0.00	0	16	0	16	n	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.11	1	8	1	8	n	0.00	0	1	0	1	n	0.06	1	15	1	15	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	ENSMUSG00000022191.17	Drosha	chr15	protein_coding	drosha, ribonuclease type III
novel_NIR_6543	chr15	12905787	12912597	+	12905787;12907480	12907410;12912597	ES	ENSMUST00000169061.8	novel	0.00	0	12.5	0	9;16	n	0.00	0	15.0	0	13;17	n	0.08	2	23.5	2	21;26	n	0.07	1	14.0	1	10;18	n	0.00	0	19.0	0	21;17	n	0.00	0	7.5	0	4;11	n	0.00	0	16.0	0	20;12	n	0.00	0	9.0	0	9;9	n	0.00	0	10.0	0	11;9	n	0.00	0	10.0	0	13;7	n	0.00	0	16.5	0	16;17	n	0.25	4	12.0	4	15;9	y	ENSMUSG00000022191.17	Drosha	chr15	protein_coding	drosha, ribonuclease type III
novel_NIR_6544	chr15	25933958	25964310	+	25895229	25964310	A5SS	ENSMUST00000022881.15	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.83	5	1	5	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022270.17	Retreg1	chr15	protein_coding	reticulophagy regulator 1
novel_NIR_6545	chr15	25933958	25964310	+	25910683	25964310	A5SS	ENSMUST00000228600.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022270.17	Retreg1	chr15	protein_coding	reticulophagy regulator 1
novel_NIR_6546	chr15	25933958	25964310	+	25941036	25964310	5pMXE	ENSMUST00000226438.2	novel	0.00	0	18	0	18	n	0.00	0	4	0	4	n	0.00	0	37	0	37	n	0.00	0	4	0	4	n	0.00	0	17	0	17	n	0.00	0	34	0	34	n	0.00	0	15	0	15	n	0.00	0	19	0	19	n	0.00	0	5	0	5	n	0.38	5	8	5	8	y	0.00	0	3	0	3	n	0.00	0	15	0	15	n	ENSMUSG00000022270.17	Retreg1	chr15	protein_coding	reticulophagy regulator 1
novel_NIR_6547	chr15	25933958	25964310	+	25941329	25964310	5pMXE	ENSMUST00000227275.2	novel	0.00	0	22	0	22	n	0.00	0	19	0	19	n	0.00	0	104	0	104	n	0.00	0	33	0	33	n	0.00	0	46	0	46	n	0.00	0	92	0	92	n	0.00	0	111	0	111	n	0.00	0	45	0	45	n	0.00	0	8	0	8	n	0.17	5	25	5	25	y	0.00	0	8	0	8	n	0.00	0	33	0	33	n	ENSMUSG00000022270.17	Retreg1	chr15	protein_coding	reticulophagy regulator 1
novel_NIR_6548	chr15	25933958	25964310	+	25942867	25964310	5pMXE	ENSMUST00000228306.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000022270.17	Retreg1	chr15	protein_coding	reticulophagy regulator 1
novel_NIR_6549	chr15	27460276	27461344	-	27460276	27460876	A5SS&ES	ENSMUST00000227384.2	novel	0.00	0	2	0	2	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000115138.2	Gm36899	chr15	lncRNA	predicted gene, 36899
novel_NIR_6550	chr15	27606156	27608678	-	27542922	27608678	A3SS	ENSMUST00000228179.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000046034.9	Otulin	chr15	protein_coding	OTU deubiquitinase with linear linkage specificity
novel_NIR_6551	chr15	27606906	27608678	-	27542922	27608678	A3SS	ENSMUST00000228179.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000046034.9	Otulin	chr15	protein_coding	OTU deubiquitinase with linear linkage specificity
novel_NIR_6552	chr15	27619709	27630540	-	27619709	27630544	A5SS	ENSMUST00000228439.2	novel	0.33	2	4	2	4	y	-	-	-	-	-	-	0.11	1	8	1	8	n	0.38	3	5	3	5	y	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.11	1	8	1	8	n	0.43	3	4	3	4	y	ENSMUSG00000046034.9	Otulin	chr15	protein_coding	OTU deubiquitinase with linear linkage specificity
novel_NIR_6553	chr15	27742423	27742458	-	27741365	27742458	A3SS	ENSMUST00000090247.7	novel	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.30	3	7	3	7	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	ENSMUSG00000022263.11	Trio	chr15	protein_coding	triple functional domain (PTPRF interacting)
novel_NIR_6554	chr15	27748154	27748546	-	27748228	27748546	A3SS	ENSMUST00000227030.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022263.11	Trio	chr15	protein_coding	triple functional domain (PTPRF interacting)
novel_NIR_6555	chr15	31224729	31229750	+	31224729	31272535	A3SS	ENSMUST00000186109.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	2	4	2	4	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039168.16	Dap	chr15	protein_coding	death-associated protein
novel_NIR_6556	chr15	31224729	31235066	+	31224729	31272535	A3SS	ENSMUST00000186109.2	novel	1.00	11	0	11	0	y	1.00	3	0	3	0	y	1.00	6	0	6	0	y	1.00	2	0	2	0	y	0.80	4	1	4	1	y	1.00	4	0	4	0	y	0.71	10	4	10	4	y	1.00	6	0	6	0	y	1.00	6	0	6	0	y	1.00	9	0	9	0	y	1.00	4	0	4	0	y	1.00	5	0	5	0	y	ENSMUSG00000039168.16	Dap	chr15	protein_coding	death-associated protein
novel_NIR_6557	chr15	31229948	31235919	+	31224835	31235919	A5SS	ENSMUST00000186547.7	novel	-	-	-	-	-	-	0.50	3	3	3	3	y	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000039168.16	Dap	chr15	protein_coding	death-associated protein
novel_NIR_6558	chr15	31235138	31235919	+	31224835	31235919	A5SS	ENSMUST00000186547.7	novel	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.43	3	4	3	4	y	0.00	0	4	0	4	n	0.50	4	4	4	4	y	1.00	5	0	5	0	y	0.00	0	7	0	7	n	0.60	3	2	3	2	y	0.25	1	3	1	3	n	0.67	4	2	4	2	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000039168.16	Dap	chr15	protein_coding	death-associated protein
novel_NIR_6559	chr15	31235138	31235919	+	31225450	31235919	A5SS	ENSMUST00000186425.7	novel	0.06	2	29	2	29	n	0.00	0	31	0	31	n	0.12	3	22	3	22	n	0.00	0	38	0	38	n	0.12	4	30	4	30	n	0.25	5	15	5	15	y	0.00	0	28	0	28	n	0.20	3	12	3	12	n	0.05	1	19	1	19	n	0.08	4	44	4	44	n	0.00	0	28	0	28	n	0.00	0	28	0	28	n	ENSMUSG00000039168.16	Dap	chr15	protein_coding	death-associated protein
novel_NIR_6560	chr15	31258835	31272535	+	31224729	31272535	A5SS	ENSMUST00000186109.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	1.00	3	0	3	0	y	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000039168.16	Dap	chr15	protein_coding	death-associated protein
novel_NIR_6561	chr15	31258835	31272535	+	31268636	31272535	5pMXE	ENSMUST00000185618.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000039168.16	Dap	chr15	protein_coding	death-associated protein
novel_NIR_6562	chr15	31509968	31530784	-	31509968	31512479	A5SS&ES	ENSMUST00000228122.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000039100.11	Marchf6	chr15	protein_coding	membrane associated ring-CH-type finger 6
novel_NIR_6563	chr15	31568696	31581986	+	31565647	31581986	A5SS	ENSMUST00000226951.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.67	2	1	2	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000022235.16	Cmbl	chr15	protein_coding	carboxymethylenebutenolidase-like (Pseudomonas)
novel_NIR_6564	chr15	31569085	31571532	+	31569085	31581986	A3SS	ENSMUST00000162532.8	novel	0.04	7	165	7	165	n	0.05	8	149	8	149	n	0.12	11	81	11	81	n	0.06	17	259	17	259	n	0.07	22	275	22	275	n	0.20	16	66	16	66	y	0.10	31	287	31	287	n	0.16	17	90	17	90	y	0.09	18	180	18	180	n	0.07	20	281	20	281	n	0.06	13	221	13	221	n	0.05	10	195	10	195	n	ENSMUSG00000022235.16	Cmbl	chr15	protein_coding	carboxymethylenebutenolidase-like (Pseudomonas)
novel_NIR_6565	chr15	31569287	31581986	+	31565647	31581986	A5SS	ENSMUST00000226951.2	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	4	2	4	2	y	-	-	-	-	-	-	0.67	2	1	2	1	y	0.75	3	1	3	1	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000022235.16	Cmbl	chr15	protein_coding	carboxymethylenebutenolidase-like (Pseudomonas)
novel_NIR_6566	chr15	31603720	31606260	+	31603720	31606057	A3SS	ENSMUST00000161061.3	novel	0.15	2	11	2	11	y	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	25	0	25	n	0.00	0	4	0	4	n	0.00	0	16	0	16	n	0.00	0	19	0	19	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	ENSMUSG00000039065.12	Atpsckmt	chr15	protein_coding	ATP synthase C subunit lysine N-methyltransferase
novel_NIR_6567	chr15	31604455	31606057	+	31602295	31606057	A5SS	ENSMUST00000042702.7	novel	0.00	0	17	0	17	n	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	17	0	17	n	0.00	0	12	0	12	n	0.29	2	5	2	5	y	ENSMUSG00000039065.12	Atpsckmt	chr15	protein_coding	ATP synthase C subunit lysine N-methyltransferase
novel_NIR_6568	chr15	31604455	31606057	+	31603720	31606057	A5SS	ENSMUST00000161061.3	novel	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	25	0	25	n	0.00	0	4	0	4	n	0.00	0	16	0	16	n	0.00	0	19	0	19	n	0.00	0	5	0	5	n	0.22	2	7	2	7	y	ENSMUSG00000039065.12	Atpsckmt	chr15	protein_coding	ATP synthase C subunit lysine N-methyltransferase
novel_NIR_6569	chr15	3300534	3301492	+	3300534	3302237	A3SS	ENSMUST00000160311.3	novel	0.76	13	4	13	4	y	0.68	15	7	15	7	y	0.52	13	12	13	12	y	0.67	22	11	22	11	y	0.59	36	25	36	25	y	0.62	10	6	10	6	y	0.63	17	10	17	10	y	0.50	8	8	8	8	y	0.42	10	14	10	14	y	0.56	18	14	18	14	y	0.43	6	8	6	8	y	0.44	20	25	20	25	y	ENSMUSG00000064373.14	Selenop	chr15	protein_coding	selenoprotein P
novel_NIR_6570	chr15	3300534	3304122	+	3300534	3302237	A3SS&ES	ENSMUST00000160311.3	novel	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.08	1	12	1	12	n	0.00	0	11	0	11	n	0.00	0	25	0	25	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.20	2	8	2	8	y	0.12	2	14	2	14	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	25	0	25	n	ENSMUSG00000064373.14	Selenop	chr15	protein_coding	selenoprotein P
novel_NIR_6571	chr15	3300534	3304351	+	3300534	3302237	A3SS&ES	ENSMUST00000160311.3	novel	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.15	2	11	2	11	y	0.00	0	25	0	25	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.07	1	14	1	14	n	0.11	1	8	1	8	n	0.00	0	25	0	25	n	ENSMUSG00000064373.14	Selenop	chr15	protein_coding	selenoprotein P
novel_NIR_6572	chr15	3300538	3304143	+	3298250	3304143	A5SS	ENSMUST00000160787.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000064373.14	Selenop	chr15	protein_coding	selenoprotein P
novel_NIR_6573	chr15	3300538	3304143	+	3300307	3304143	A5SS	ENSMUST00000082424.12	novel	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.33	3	6	3	6	y	0.00	0	15	0	15	n	0.33	5	10	5	10	y	0.33	3	6	3	6	y	0.20	4	16	4	16	y	0.12	1	7	1	7	n	0.00	0	11	0	11	n	0.00	0	23	0	23	n	0.00	0	13	0	13	n	0.00	0	20	0	20	n	ENSMUSG00000064373.14	Selenop	chr15	protein_coding	selenoprotein P
novel_NIR_6574	chr15	3300538	3304143	+	3300434	3304143	A5SS	ENSMUST00000159158.9	novel	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.60	3	2	3	2	y	0.00	0	10	0	10	n	0.33	5	10	5	10	y	0.60	3	2	3	2	y	0.33	4	8	4	8	y	0.25	1	3	1	3	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	ENSMUSG00000064373.14	Selenop	chr15	protein_coding	selenoprotein P
novel_NIR_6575	chr15	3300538	3304143	+	3301649	3304143	5pMXE	ENSMUST00000160930.3	novel	0.00	0	26	0	26	n	0.00	0	25	0	25	n	0.10	3	26	3	26	n	0.00	0	27	0	27	n	0.12	5	37	5	37	n	0.21	3	11	3	11	y	0.13	4	26	4	26	n	0.07	1	13	1	13	n	0.00	0	16	0	16	n	0.00	0	23	0	23	n	0.00	0	23	0	23	n	0.00	0	26	0	26	n	ENSMUSG00000064373.14	Selenop	chr15	protein_coding	selenoprotein P
novel_NIR_6576	chr15	3300538	3304143	+	3302287	3304143	A5SS&ES	ENSMUST00000160311.3	novel	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.12	3	21	3	21	n	0.00	0	18	0	18	n	0.10	5	43	5	43	n	0.23	3	10	3	10	y	0.14	4	25	4	25	n	0.07	1	14	1	14	n	0.00	0	14	0	14	n	0.00	0	32	0	32	n	0.00	0	13	0	13	n	0.00	0	31	0	31	n	ENSMUSG00000064373.14	Selenop	chr15	protein_coding	selenoprotein P
novel_NIR_6577	chr15	3300582	3304143	+	3298250	3304143	A5SS	ENSMUST00000160787.10	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000064373.14	Selenop	chr15	protein_coding	selenoprotein P
novel_NIR_6578	chr15	3300582	3304143	+	3300434	3304143	A5SS	ENSMUST00000159158.9	novel	0.33	1	2	1	2	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.19	3	13	3	13	y	0.00	0	6	0	6	n	0.00	0	15	0	15	n	ENSMUSG00000064373.14	Selenop	chr15	protein_coding	selenoprotein P
novel_NIR_6579	chr15	33083468	33113184	+	33083468	33090445	3pMXE	ENSMUST00000227018.2	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.33	2	4	2	4	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000039007.11	Cpq	chr15	protein_coding	carboxypeptidase Q
novel_NIR_6580	chr15	33083468	33113184	+	33083468	33154305	A3SS	ENSMUST00000228916.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000039007.11	Cpq	chr15	protein_coding	carboxypeptidase Q
novel_NIR_6581	chr15	33083468	33113184	+	33083468	33182796	A3SS	ENSMUST00000228737.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039007.11	Cpq	chr15	protein_coding	carboxypeptidase Q
novel_NIR_6582	chr15	33083468	33212966	+	33083468	33090445	3pMXE	ENSMUST00000227018.2	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.90	9	1	9	1	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000039007.11	Cpq	chr15	protein_coding	carboxypeptidase Q
novel_NIR_6583	chr15	33083468	33212966	+	33083468	33154305	A3SS&ES	ENSMUST00000228916.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	9	0	9	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000039007.11	Cpq	chr15	protein_coding	carboxypeptidase Q
novel_NIR_6584	chr15	33083468	33212966	+	33083468	33182796	A3SS&ES	ENSMUST00000228737.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	9	0	9	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039007.11	Cpq	chr15	protein_coding	carboxypeptidase Q
novel_NIR_6585	chr15	3323447	3327583	-	3323403	3327583	A3SS	ENSMUST00000226261.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000091119.3	Ccdc152	chr15	protein_coding	coiled-coil domain containing 152
novel_NIR_6586	chr15	3330675	3332553	-	3330675	3332978	A5SS	ENSMUST00000165386.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000091119.3	Ccdc152	chr15	protein_coding	coiled-coil domain containing 152
novel_NIR_6587	chr15	34114254	34114948	+	34114254	34116457	A3SS	ENSMUST00000170553.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000022255.17	Mtdh	chr15	protein_coding	metadherin
novel_NIR_6588	chr15	3418195	3440794	-	3418195	3475007	A5SS	ENSMUST00000159508.8	novel	-	-	-	-	-	-	1.00	10	0	10	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	n	1.00	2	0	2	0	y	0.86	6	1	6	1	n	0.80	8	2	8	2	n	1.00	7	0	7	0	n	1.00	3	0	3	0	n	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
novel_NIR_6589	chr15	3418195	3440794	-	3418195	3612482	A5SS	ENSMUST00000160343.8	novel	0.00	0	3	0	3	n	0.91	10	1	10	1	y	-	-	-	-	-	-	0.75	3	1	3	1	y	0.20	1	4	1	4	n	1.00	2	0	2	0	y	0.33	2	4	2	4	y	0.67	2	1	2	1	y	0.67	6	3	6	3	y	0.53	8	7	8	7	y	0.78	7	2	7	2	y	0.60	3	2	3	2	y	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
novel_NIR_6590	chr15	3418195	3456037	-	3418195	3475007	A5SS	ENSMUST00000159508.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
novel_NIR_6591	chr15	3418195	3456037	-	3418195	3612482	A5SS	ENSMUST00000160343.8	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.00	0	7	0	7	n	0.60	3	2	3	2	y	0.00	0	2	0	2	n	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
novel_NIR_6592	chr15	3418195	3487418	-	3418195	3475007	A5SS&ES	ENSMUST00000159508.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	0.33	1	2	1	2	n	1.00	3	0	3	0	y	1.00	3	0	3	0	y	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
novel_NIR_6593	chr15	3418195	3487418	-	3418195	3612482	A5SS	ENSMUST00000160343.8	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.50	3	3	3	3	y	0.12	1	7	1	7	n	0.60	3	2	3	2	y	0.60	3	2	3	2	y	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
novel_NIR_6594	chr15	3418195;3441004	3440794;3487412	-	3418195;3475093	3475007;3487412	MXE	ENSMUST00000159508.8	novel	-	-	-	-	-	-	1.00	5.0	0.0	10;0	0;0	n	1.00	1.5	0.0	0;3	0;0	n	1.00	1.5	0.0	3;0	0;0	n	1.00	1.5	0.0	1;2	0;0	n	1.00	1.0	0.0	2;0	0;0	n	1.00	1.5	0.0	2;1	0;0	n	1.00	1.0	0.0	2;0	0;0	n	0.92	5.5	0.5	6;5	1;0	y	0.70	7.0	3.0	8;6	2;4	y	1.00	4.5	0.0	7;2	0;0	y	1.00	3.5	0.0	3;4	0;0	y	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
novel_NIR_6595	chr15	3418195;3611984	3611740;3612482	-	3418195	3612482	cassetteExon	ENSMUST00000160343.8	novel	0.81	13.0	3	0;26	3	n	0.90	9.0	1	0;18	1	n	1.00	6.5	0	0;13	0	n	0.96	23.0	1	6;40	1	y	0.76	13.0	4	3;23	4	y	1.00	4.5	0	0;9	0	n	0.79	15.0	4	1;29	4	n	0.90	9.0	1	0;18	1	n	0.83	14.5	3	4;25	3	y	0.81	29.5	7	3;56	7	y	0.90	18.5	2	3;34	2	y	0.92	23.5	2	6;41	2	y	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
novel_NIR_6596	chr15	3441004	3487412	-	3475093	3487412	A3SS&ES	ENSMUST00000159508.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	n	0.60	6	4	6	4	n	1.00	2	0	2	0	n	1.00	4	0	4	0	n	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
novel_NIR_6597	chr15	34488825	34489919	-	34488825	34489778	A5SS	ENSMUST00000125286.8	novel	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.13	3	20	3	20	n	0.50	1	1	1	1	n	0.17	4	19	4	19	y	0.14	1	6	1	6	n	0.07	1	13	1	13	n	0.17	4	20	4	20	y	0.00	0	12	0	12	n	0.15	6	35	6	35	y	ENSMUSG00000022323.12	Rida	chr15	protein_coding	reactive intermediate imine deaminase A homolog
novel_NIR_6598	chr15	34488825	34490708	-	34488825	34489778	5pMXE	ENSMUST00000125286.8	novel	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	20	0	20	n	0.00	0	1	0	1	n	0.00	0	19	0	19	n	0.00	0	6	0	6	n	0.19	3	13	3	13	y	0.00	0	20	0	20	n	0.00	0	12	0	12	n	0.00	0	35	0	35	n	ENSMUSG00000022323.12	Rida	chr15	protein_coding	reactive intermediate imine deaminase A homolog
novel_NIR_6599	chr15	34488825	34495535	-	34488825	34489778	5pMXE	ENSMUST00000125286.8	novel	0.00	0	17	0	17	n	0.17	2	10	2	10	y	0.25	1	3	1	3	n	0.08	1	11	1	11	n	0.00	0	20	0	20	n	0.00	0	1	0	1	n	0.05	1	19	1	19	n	0.25	2	6	2	6	y	0.13	2	13	2	13	n	0.09	2	20	2	20	n	0.08	1	12	1	12	n	0.10	4	35	4	35	n	ENSMUSG00000022323.12	Rida	chr15	protein_coding	reactive intermediate imine deaminase A homolog
novel_NIR_6600	chr15	3456187	3487412	-	3475093	3487412	A3SS&ES	ENSMUST00000159508.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
novel_NIR_6601	chr15	3458729	3487412	-	3475093	3487412	A3SS&ES	ENSMUST00000159508.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
novel_NIR_6602	chr15	3487490	3488423	-	3487490	3500882	A5SS	ENSMUST00000110697.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	4	0	4	n	1.00	1	0	1	0	n	0.00	0	12	0	12	n	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
novel_NIR_6603	chr15	3487490	3488423	-	3487490	3611271	A5SS	ENSMUST00000161561.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	3	0	3	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
novel_NIR_6604	chr15	3487490	3502339	-	3487490	3500882	5pMXE	ENSMUST00000110697.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.43	3	4	3	4	y	-	-	-	-	-	-	0.08	1	12	1	12	n	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
novel_NIR_6605	chr15	3487490	3502339	-	3487490	3611271	A5SS	ENSMUST00000161561.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	3	3	3	3	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
novel_NIR_6606	chr15	3487490	3503246	-	3487490	3500882	5pMXE	ENSMUST00000110697.9	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.08	1	12	1	12	n	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
novel_NIR_6607	chr15	3487490	3503246	-	3487490	3611271	A5SS	ENSMUST00000161561.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
novel_NIR_6608	chr15	3487490	3503570	-	3487490	3500882	5pMXE	ENSMUST00000110697.9	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	12	0	12	n	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
novel_NIR_6609	chr15	3487490	3503570	-	3487490	3611271	A5SS	ENSMUST00000161561.8	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
novel_NIR_6610	chr15	3487490	3573507	-	3487490	3500882	5pMXE	ENSMUST00000110697.9	novel	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	1.00	1	0	1	0	n	0.20	3	12	3	12	y	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
novel_NIR_6611	chr15	3487490	3573507	-	3487490	3611271	A5SS	ENSMUST00000161561.8	novel	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.25	1	3	1	3	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
novel_NIR_6612	chr15	3487490	3581015	-	3487490	3500882	5pMXE	ENSMUST00000110697.9	novel	1.00	6	0	6	0	y	1.00	4	0	4	0	y	1.00	3	0	3	0	y	0.71	5	2	5	2	y	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	4	0	4	0	y	0.71	5	2	5	2	y	0.60	3	2	3	2	y	0.71	10	4	10	4	y	1.00	8	0	8	0	y	0.37	7	12	7	12	y	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
novel_NIR_6613	chr15	3487490	3581015	-	3487490	3611271	A5SS	ENSMUST00000161561.8	novel	1.00	6	0	6	0	y	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	5	0	5	0	y	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	5	0	5	0	y	1.00	3	0	3	0	y	0.77	10	3	10	3	y	1.00	8	0	8	0	y	1.00	7	0	7	0	y	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
novel_NIR_6614	chr15	3487490	3581015	-	3487490	3611740	A5SS	ENSMUST00000161770.2	novel	0.11	6	48	6	48	n	0.12	4	30	4	30	n	0.13	3	20	3	20	n	0.08	5	61	5	61	n	0.03	2	57	2	57	n	0.00	0	16	0	16	n	0.07	4	50	4	50	n	0.24	5	16	5	16	n	0.07	3	41	3	41	n	0.16	10	54	10	54	n	0.18	8	36	8	36	y	0.13	7	48	7	48	n	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
novel_NIR_6615	chr15	3487490	3581015	-	3573715	3581015	3pMXE	ENSMUST00000159912.2	novel	0.55	6	5	6	5	y	1.00	4	0	4	0	y	1.00	3	0	3	0	y	0.56	5	4	5	4	y	0.33	2	4	2	4	y	-	-	-	-	-	-	0.44	4	5	4	5	y	1.00	5	0	5	0	y	0.21	3	11	3	11	y	0.83	10	2	10	2	y	0.53	8	7	8	7	y	1.00	7	0	7	0	y	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
novel_NIR_6616	chr15	3487490	3611458	-	3487490	3500882	5pMXE	ENSMUST00000110697.9	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	1	1	1	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.20	1	4	1	4	n	1.00	1	0	1	0	n	0.00	0	12	0	12	n	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
novel_NIR_6617	chr15	3487490	3611458	-	3487490	3611271	5pMXE	ENSMUST00000161561.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.25	1	3	1	3	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
novel_NIR_6618	chr15	3487490	3611545	-	3487490	3500882	5pMXE	ENSMUST00000110697.9	novel	1.00	4	0	4	0	y	1.00	5	0	5	0	y	1.00	2	0	2	0	y	0.71	5	2	5	2	y	0.93	14	1	14	1	y	1.00	2	0	2	0	y	1.00	7	0	7	0	y	0.75	6	2	6	2	y	0.89	16	2	16	2	y	0.79	15	4	15	4	y	1.00	8	0	8	0	y	0.45	10	12	10	12	y	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
novel_NIR_6619	chr15	3487490	3611545	-	3487490	3611271	5pMXE	ENSMUST00000161561.8	novel	1.00	4	0	4	0	y	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	0.88	14	2	14	2	y	1.00	2	0	2	0	y	1.00	7	0	7	0	y	1.00	6	0	6	0	y	1.00	16	0	16	0	y	0.83	15	3	15	3	y	1.00	8	0	8	0	y	1.00	10	0	10	0	y	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
novel_NIR_6620	chr15	3487490	3611545	-	3487490	3611740	A5SS	ENSMUST00000161770.2	novel	0.08	4	48	4	48	n	0.14	5	30	5	30	n	0.09	2	20	2	20	n	0.08	5	61	5	61	n	0.20	14	57	14	57	y	0.11	2	16	2	16	n	0.12	7	50	7	50	n	0.27	6	16	6	16	y	0.28	16	41	16	41	y	0.22	15	54	15	54	y	0.18	8	36	8	36	y	0.17	10	48	10	48	y	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
novel_NIR_6621	chr15	3487490	3611627	-	3487490	3500882	5pMXE	ENSMUST00000110697.9	novel	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	14	0	14	0	y	0.00	0	2	0	2	n	0.83	10	2	10	2	y	0.64	7	4	7	4	y	1.00	3	0	3	0	y	0.25	4	12	4	12	y	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
novel_NIR_6622	chr15	3487490	3611627	-	3487490	3611271	5pMXE	ENSMUST00000161561.8	novel	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	14	0	14	0	y	-	-	-	-	-	-	1.00	10	0	10	0	y	0.70	7	3	7	3	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
novel_NIR_6623	chr15	3487490	3611627	-	3487490	3611740	A5SS	ENSMUST00000161770.2	novel	0.04	2	48	2	48	n	0.06	2	30	2	30	n	0.00	0	20	0	20	n	0.00	0	61	0	61	n	0.03	2	57	2	57	n	0.00	0	16	0	16	n	0.22	14	50	14	50	y	0.00	0	16	0	16	n	0.20	10	41	10	41	y	0.11	7	54	7	54	n	0.08	3	36	3	36	n	0.08	4	48	4	48	n	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
novel_NIR_6624	chr15	35379178	35388018	+	35379178	35417657	A3SS	ENSMUST00000048646.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.33	3	6	3	6	y	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	ENSMUSG00000037646.11	Vps13b	chr15	protein_coding	vacuolar protein sorting 13B
novel_NIR_6625	chr15	35472210	35491274	+	35472210	35533442	A3SS	ENSMUST00000048646.9	novel	0.17	2	10	2	10	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.10	1	9	1	9	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	ENSMUSG00000037646.11	Vps13b	chr15	protein_coding	vacuolar protein sorting 13B
novel_NIR_6626	chr15	35572315	35576528	+	35572315	35576525	A3SS	ENSMUST00000048646.9	novel	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.31	4	9	4	9	y	0.20	2	8	2	8	y	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.50	2	2	2	2	y	0.29	2	5	2	5	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	ENSMUSG00000037646.11	Vps13b	chr15	protein_coding	vacuolar protein sorting 13B
novel_NIR_6627	chr15	35597668	35617744	+	35597668;35607510	35607276;35617744	ES	ENSMUST00000048646.9	novel	0.00	0	1.0	0	2;0	n	0.00	0	1.5	0	0;3	n	0.00	0	10.0	0	6;14	n	0.00	0	6.0	0	7;5	n	0.10	1	9.0	1	8;10	n	0.00	0	4.5	0	4;5	n	0.00	0	2.0	0	2;2	n	0.00	0	12.5	0	7;18	n	0.00	0	4.5	0	4;5	n	0.22	2	7.0	2	6;8	y	0.00	0	3.0	0	2;4	n	0.00	0	7.0	0	7;7	n	ENSMUSG00000037646.11	Vps13b	chr15	protein_coding	vacuolar protein sorting 13B
novel_NIR_6628	chr15	3581167;3611984	3611545;3612482	-	3581167	3612482	cassetteExon	ENSMUST00000159912.2	novel	0.68	13.0	6	0;26	6	n	0.75	9.0	3	0;18	3	n	1.00	6.5	0	0;13	0	n	0.72	21.0	8	2;40	8	y	0.85	11.5	2	0;23	2	n	1.00	4.5	0	0;9	0	n	0.79	15.0	4	1;29	4	n	1.00	9.0	0	0;18	0	n	1.00	12.5	0	0;25	0	n	0.91	29.5	3	3;56	3	y	1.00	17.0	0	0;34	0	n	0.87	20.5	3	0;41	3	n	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
novel_NIR_6629	chr15	3581167;3611984	3611627;3612482	-	3581167	3612482	cassetteExon	ENSMUST00000159912.2	novel	0.68	13.0	6	0;26	6	n	0.75	9.0	3	0;18	3	n	1.00	6.5	0	0;13	0	n	0.71	20.0	8	0;40	8	n	0.85	11.5	2	0;23	2	n	1.00	4.5	0	0;9	0	n	0.78	14.5	4	0;29	4	n	1.00	9.0	0	0;18	0	n	1.00	14.0	0	3;25	0	y	0.90	28.0	3	0;56	3	n	1.00	17.0	0	0;34	0	n	0.88	21.5	3	2;41	3	y	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
novel_NIR_6630	chr15	3581167;3611984	3611740;3612482	-	3581167	3612482	cassetteExon	ENSMUST00000159912.2	novel	0.68	13.0	6	0;26	6	n	0.77	10.0	3	2;18	3	y	1.00	6.5	0	0;13	0	n	0.71	20.0	8	0;40	8	n	0.85	11.5	2	0;23	2	n	1.00	5.0	0	1;9	0	n	0.78	14.5	4	0;29	4	n	1.00	9.5	0	1;18	0	n	1.00	16.0	0	7;25	0	y	0.90	28.0	3	0;56	3	n	1.00	17.0	0	0;34	0	n	0.88	22.0	3	3;41	3	y	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
novel_NIR_6631	chr15	35905536	35910812	+	35905536	35910293	A3SS	ENSMUST00000048646.9	novel	0.00	0	26	0	26	n	0.00	0	22	0	22	n	0.00	0	59	0	59	n	0.00	0	41	0	41	n	0.00	0	62	0	62	n	0.00	0	30	0	30	n	0.00	0	49	0	49	n	0.02	1	40	1	40	n	0.21	7	26	7	26	y	0.02	1	54	1	54	n	0.00	0	26	0	26	n	0.00	0	40	0	40	n	ENSMUSG00000037646.11	Vps13b	chr15	protein_coding	vacuolar protein sorting 13B
novel_NIR_6632	chr15	35937430	35937964	-	35937430	35937907	A5SS	ENSMUST00000156915.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000014313.16	Cox6c	chr15	protein_coding	cytochrome c oxidase subunit 6C
novel_NIR_6633	chr15	3611984	3612482	-	3418195	3612482	A3SS	ENSMUST00000160343.8	novel	0.90	26	3	26	3	n	0.95	18	1	18	1	y	1.00	13	0	13	0	y	0.98	40	1	40	1	n	0.85	23	4	23	4	n	1.00	9	0	9	0	y	0.88	29	4	29	4	n	0.95	18	1	18	1	y	0.89	25	3	25	3	n	0.89	56	7	56	7	n	0.94	34	2	34	2	n	0.95	41	2	41	2	n	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
novel_NIR_6634	chr15	3611984	3612482	-	3581167	3612482	A3SS	ENSMUST00000159912.2	novel	0.81	26	6	26	6	y	0.86	18	3	18	3	n	1.00	13	0	13	0	y	0.83	40	8	40	8	n	0.92	23	2	23	2	y	1.00	9	0	9	0	n	0.88	29	4	29	4	n	1.00	18	0	18	0	n	1.00	25	0	25	0	n	0.95	56	3	56	3	n	1.00	34	0	34	0	y	0.93	41	3	41	3	n	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
novel_NIR_6635	chr15	36489655	36496023	-	36492351	36496023	3pMXE	ENSMUST00000226506.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000048307.9	Ankrd46	chr15	protein_coding	ankyrin repeat domain 46
novel_NIR_6636	chr15	36494558	36496023	-	36492351	36496023	A3SS	ENSMUST00000226506.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000048307.9	Ankrd46	chr15	protein_coding	ankyrin repeat domain 46
novel_NIR_6637	chr15	36596343	36596803	-	36596343	36596763	A5SS	ENSMUST00000155116.2	novel	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.36	4	7	4	7	y	0.20	2	8	2	8	y	0.17	1	5	1	5	n	ENSMUSG00000022283.16	Pabpc1	chr15	protein_coding	poly(A) binding protein, cytoplasmic 1
novel_NIR_6638	chr15	36601653	36603099	-	36601653	36602549	5pMXE	ENSMUST00000156793.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	14	0	14	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	6	0	6	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.67	4	2	4	2	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	ENSMUSG00000022283.16	Pabpc1	chr15	protein_coding	poly(A) binding protein, cytoplasmic 1
novel_NIR_6639	chr15	36791232	36792018	-	36791232	36792356	A5SS	ENSMUST00000126184.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000022285.18	Ywhaz	chr15	protein_coding	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
novel_NIR_6640	chr15	36791232	36792018	-	36791232	36793412	A5SS	ENSMUST00000151635.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000022285.18	Ywhaz	chr15	protein_coding	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
novel_NIR_6641	chr15	36791232	36792018	-	36791232	36794389	A5SS	ENSMUST00000110361.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	ENSMUSG00000022285.18	Ywhaz	chr15	protein_coding	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
novel_NIR_6642	chr15	36791232	36792018	-	36791232	36797055	A5SS	ENSMUST00000226851.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000022285.18	Ywhaz	chr15	protein_coding	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
novel_NIR_6643	chr15	36943048	36945375	+	36939262	36945375	A5SS	ENSMUST00000227227.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000115333.2	Gm34590	chr15	lncRNA	predicted gene, 34590
novel_NIR_6644	chr15	37397697	37443900	-	37397697	37458733	A5SS	ENSMUST00000116445.9	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000051359.16	Ncald	chr15	protein_coding	neurocalcin delta
novel_NIR_6645	chr15	37397697	37443900	-	37397697	37563635	A5SS	ENSMUST00000168992.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000051359.16	Ncald	chr15	protein_coding	neurocalcin delta
novel_NIR_6646	chr15	37397697	37443900	-	37397697	37792378	A5SS	ENSMUST00000150453.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000051359.16	Ncald	chr15	protein_coding	neurocalcin delta
novel_NIR_6647	chr15	37397697;37443945	37443900;37459461	-	37397697;37448523	37448472;37459461	MXE	ENSMUST00000120746.8	novel	1.00	0.5	0.0	1;0	0;0	n	0.00	0.0	1.0	0;0	1;1	n	0.00	0.0	1.0	0;0	0;2	n	0.00	0.0	1.0	0;0	0;2	n	0.00	0.0	1.5	0;0	2;1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	0.5	0.0	1;0	0;0	n	0.00	0.0	1.0	0;0	1;1	n	0.33	0.5	1.0	1;0	1;1	n	0.57	2.0	1.5	2;2	1;2	y	0.00	0.0	1.0	0;0	1;1	n	ENSMUSG00000051359.16	Ncald	chr15	protein_coding	neurocalcin delta
novel_NIR_6648	chr15	37973702	37975437	-	37973702	37976304	A5SS	ENSMUST00000228333.2	novel	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.44	4	5	4	5	y	0.00	0	2	0	2	n	0.33	1	2	1	2	n	ENSMUSG00000037487.8	Ubr5	chr15	protein_coding	ubiquitin protein ligase E3 component n-recognin 5
novel_NIR_6649	chr15	38009407	38009870	-	38009458	38009870	A3SS	ENSMUST00000110336.4	novel	0.08	1	11	1	11	n	0.15	2	11	2	11	y	0.06	3	50	3	50	n	0.00	0	29	0	29	n	0.05	2	36	2	36	n	0.06	1	15	1	15	n	0.00	0	26	0	26	n	0.00	0	37	0	37	n	0.04	1	25	1	25	n	0.02	1	41	1	41	n	0.00	0	12	0	12	n	0.12	3	23	3	23	n	ENSMUSG00000037487.8	Ubr5	chr15	protein_coding	ubiquitin protein ligase E3 component n-recognin 5
novel_NIR_6650	chr15	38453647	38455015	-	38453647	38454916	A5SS	ENSMUST00000228650.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000115009.2	G930009F23Rik	chr15	lncRNA	RIKEN cDNA G930009F23 gene
novel_NIR_6651	chr15	38455059	38457709	-	38455059	38455224	5pMXE	ENSMUST00000228650.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000115009.2	G930009F23Rik	chr15	lncRNA	RIKEN cDNA G930009F23 gene
novel_NIR_6652	chr15	38501826	38514717	-	38507590	38514717	A3SS&ES	ENSMUST00000110329.8	novel	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.05	1	18	1	18	n	0.18	2	9	2	9	y	0.00	0	16	0	16	n	0.00	0	17	0	17	n	0.00	0	22	0	22	n	0.11	1	8	1	8	n	0.12	1	7	1	7	n	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.06	1	17	1	17	n	ENSMUSG00000037458.16	Azin1	chr15	protein_coding	antizyme inhibitor 1
novel_NIR_6653	chr15	38959498	38960915	-	38959503	38960915	A3SS	ENSMUST00000022908.10	novel	0.20	3	12	3	12	y	0.00	0	17	0	17	n	0.00	0	33	0	33	n	0.00	0	19	0	19	n	0.00	0	35	0	35	n	0.00	0	25	0	25	n	0.00	0	26	0	26	n	0.25	6	18	6	18	y	0.07	1	13	1	13	n	0.00	0	26	0	26	n	0.00	0	19	0	19	n	0.00	0	23	0	23	n	ENSMUSG00000022299.10	Slc25a32	chr15	protein_coding	solute carrier family 25, member 32
novel_NIR_6654	chr15	39634501	39647965	-	39646367	39647965	3pMXE	ENSMUST00000155859.2	novel	0.00	0	12	0	12	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	13	0	13	n	0.12	2	15	2	15	n	0.00	0	2	0	2	n	0.11	1	8	1	8	n	0.29	2	5	2	5	y	0.00	0	14	0	14	n	0.15	3	17	3	17	y	0.00	0	20	0	20	n	0.24	4	13	4	13	y	ENSMUSG00000022304.14	Dpys	chr15	protein_coding	dihydropyrimidinase
novel_NIR_6655	chr15	39710112	39720495	-	39720133	39720495	3pMXE	ENSMUST00000150196.3	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.36	4	7	4	7	y	1.00	3	0	3	0	y	0.67	4	2	4	2	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000022304.14	Dpys	chr15	protein_coding	dihydropyrimidinase
novel_NIR_6656	chr15	4007479	4008604	-	4007479	4008724	A5SS	ENSMUST00000022791.9	novel	0.22	8	28	8	28	y	0.33	7	14	7	14	y	0.31	18	40	18	40	y	0.17	6	30	6	30	y	0.22	11	40	11	40	y	0.22	6	21	6	21	y	0.21	6	22	6	22	y	0.07	2	26	2	26	n	0.06	1	17	1	17	n	0.06	2	29	2	29	n	0.29	10	24	10	24	y	0.24	6	19	6	19	y	ENSMUSG00000022184.9	Fbxo4	chr15	protein_coding	F-box protein 4
novel_NIR_6657	chr15	4025610	4026887	+	4025566	4026887	A5SS	ENSMUST00000180518.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000097662.2	Gm2093	chr15	lncRNA	predicted gene 2093
novel_NIR_6658	chr15	41689448	41701648	+	41689448	41712066	A3SS	ENSMUST00000110297.10	novel	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.20	2	8	2	8	y	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.50	1	1	1	1	n	0.33	1	2	1	2	n	ENSMUSG00000022307.17	Oxr1	chr15	protein_coding	oxidation resistance 1
novel_NIR_6659	chr15	41689448	41701648	+	41694525	41701648	5pMXE	ENSMUST00000230127.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.33	1	2	1	2	n	ENSMUSG00000022307.17	Oxr1	chr15	protein_coding	oxidation resistance 1
novel_NIR_6660	chr15	44483299	44487839	+	44482765	44487839	A5SS	ENSMUST00000227691.2	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.22	2	7	2	7	y	-	-	-	-	-	-	0.00	0	7	0	7	n	ENSMUSG00000022339.10	Ebag9	chr15	protein_coding	estrogen receptor-binding fragment-associated gene 9
novel_NIR_6661	chr15	44483299	44487839	+	44482956	44487839	A5SS	ENSMUST00000228648.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022339.10	Ebag9	chr15	protein_coding	estrogen receptor-binding fragment-associated gene 9
novel_NIR_6662	chr15	44483299	44487839	+	44483338	44487839	A5SS	ENSMUST00000022964.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000022339.10	Ebag9	chr15	protein_coding	estrogen receptor-binding fragment-associated gene 9
novel_NIR_6663	chr15	44541134	44546703	-	44541134	44546744	A5SS	ENSMUST00000227081.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.22	2	7	2	7	y	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000022340.16	Sybu	chr15	protein_coding	syntabulin (syntaxin-interacting)
novel_NIR_6664	chr15	44609858	44610246	-	44609858	44611126	A5SS	ENSMUST00000227081.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022340.16	Sybu	chr15	protein_coding	syntabulin (syntaxin-interacting)
novel_NIR_6665	chr15	44609858	44610246	-	44609858	44611705	A5SS	ENSMUST00000110267.9	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.25	2	6	2	6	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022340.16	Sybu	chr15	protein_coding	syntabulin (syntaxin-interacting)
novel_NIR_6666	chr15	4794809	4811322	+	4795511	4811322	5pMXE	ENSMUST00000162729.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022181.17	C6	chr15	protein_coding	complement component 6
novel_NIR_6667	chr15	4827922	4830449	+	4827922	4835514	A3SS	ENSMUST00000162350.3	novel	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.06	1	15	1	15	n	0.00	0	6	0	6	n	0.29	2	5	2	5	y	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	18	0	18	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	ENSMUSG00000022181.17	C6	chr15	protein_coding	complement component 6
novel_NIR_6668	chr15	4827922	4830471	+	4827922	4835514	A3SS	ENSMUST00000162350.3	novel	0.97	31	1	31	1	y	0.76	16	5	16	5	y	0.92	24	2	24	2	y	0.72	31	12	31	12	y	0.81	64	15	64	15	y	0.75	18	6	18	6	y	0.85	28	5	28	5	y	0.80	16	4	16	4	y	0.76	22	7	22	7	y	0.63	31	18	31	18	y	0.62	23	14	23	14	y	0.84	49	9	49	9	y	ENSMUSG00000022181.17	C6	chr15	protein_coding	complement component 6
novel_NIR_6669	chr15	4827922	4833271	+	4827922	4835514	A3SS	ENSMUST00000162350.3	novel	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.25	2	6	2	6	y	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.59	10	7	10	7	y	0.00	0	18	0	18	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	ENSMUSG00000022181.17	C6	chr15	protein_coding	complement component 6
novel_NIR_6670	chr15	4838014	4838194	+	4838014	4844203	A3SS	ENSMUST00000162350.3	novel	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	ENSMUSG00000022181.17	C6	chr15	protein_coding	complement component 6
novel_NIR_6671	chr15	4838014	4844241	+	4838014	4844203	A3SS	ENSMUST00000162350.3	novel	1.00	9	0	9	0	y	1.00	8	0	8	0	y	-	-	-	-	-	-	1.00	9	0	9	0	y	1.00	5	0	5	0	y	1.00	5	0	5	0	y	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	7	0	7	0	y	1.00	11	0	11	0	y	1.00	6	0	6	0	y	1.00	8	0	8	0	y	ENSMUSG00000022181.17	C6	chr15	protein_coding	complement component 6
novel_NIR_6672	chr15	4838014	4847761	+	4838014	4844203	3pMXE	ENSMUST00000162350.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022181.17	C6	chr15	protein_coding	complement component 6
novel_NIR_6673	chr15	4838014	4853612	+	4838014	4844203	3pMXE	ENSMUST00000162350.3	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022181.17	C6	chr15	protein_coding	complement component 6
novel_NIR_6674	chr15	4838014	4857802	+	4838014	4844203	3pMXE	ENSMUST00000162350.3	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000022181.17	C6	chr15	protein_coding	complement component 6
novel_NIR_6675	chr15	5121971	5134385	-	5130577	5134385	3pMXE	ENSMUST00000118365.3	novel	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.05	1	18	1	18	n	0.00	0	19	0	19	n	0.00	0	11	0	11	n	0.20	3	12	3	12	y	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	16	0	16	n	ENSMUSG00000041849.8	Card6	chr15	protein_coding	caspase recruitment domain family, member 6
novel_NIR_6676	chr15	5146389	5146769	+	5146408	5146769	A5SS	ENSMUST00000227463.2	novel	0.75	6	2	6	2	y	0.00	0	4	0	4	n	0.40	2	3	2	3	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000041841.9	Rpl37	chr15	protein_coding	ribosomal protein L37
novel_NIR_6677	chr15	5146389	5146769	+	5146548	5146769	5pMXE	ENSMUST00000226758.2	novel	0.86	6	1	6	1	y	-	-	-	-	-	-	1.00	2	0	2	0	y	0.33	2	4	2	4	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	ENSMUSG00000041841.9	Rpl37	chr15	protein_coding	ribosomal protein L37
novel_NIR_6678	chr15	51653509	51657395	-	51653509	51653824	5pMXE	ENSMUST00000226756.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000022312.12	Eif3h	chr15	protein_coding	eukaryotic translation initiation factor 3, subunit H
novel_NIR_6679	chr15	51653509	51657395	-	51653509	51661009	A5SS	ENSMUST00000228625.2	novel	0.12	1	7	1	7	n	0.00	0	7	0	7	n	0.05	1	21	1	21	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.33	2	4	2	4	y	ENSMUSG00000022312.12	Eif3h	chr15	protein_coding	eukaryotic translation initiation factor 3, subunit H
novel_NIR_6680	chr15	5173477	5188686	+	5173477	5190084	A3SS	ENSMUST00000051186.9	novel	0.00	0	15	0	15	n	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.00	0	18	0	18	n	0.00	0	11	0	11	n	0.18	2	9	2	9	y	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	20	0	20	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	ENSMUSG00000050697.10	Prkaa1	chr15	protein_coding	protein kinase, AMP-activated, alpha 1 catalytic subunit
novel_NIR_6681	chr15	5190225	5198049	+	5190225;5194286	5194193;5198049	ES	ENSMUST00000051186.9	novel	0.12	2	14.5	2	14;15	n	0.18	2	9.0	2	12;6	y	0.06	2	32.0	2	32;32	n	0.05	1	17.5	1	24;11	n	0.00	0	12.5	0	16;9	n	0.00	0	10.0	0	12;8	n	0.00	0	12.0	0	11;13	n	0.00	0	4.0	0	5;3	n	0.00	0	7.0	0	5;9	n	0.24	6	18.5	6	21;16	y	0.35	4	7.5	4	7;8	y	0.19	3	13.0	3	11;15	y	ENSMUSG00000050697.10	Prkaa1	chr15	protein_coding	protein kinase, AMP-activated, alpha 1 catalytic subunit
novel_NIR_6682	chr15	5190455	5198049	+	5194286	5198049	A5SS&ES	ENSMUST00000051186.9	novel	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	32	0	32	n	0.00	0	11	0	11	n	0.18	2	9	2	9	y	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.00	0	15	0	15	n	ENSMUSG00000050697.10	Prkaa1	chr15	protein_coding	protein kinase, AMP-activated, alpha 1 catalytic subunit
novel_NIR_6683	chr15	52167333	52169846	+	52159352	52169846	A5SS	ENSMUST00000037240.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000022315.4	Slc30a8	chr15	protein_coding	solute carrier family 30 (zinc transporter), member 8
novel_NIR_6684	chr15	5218973	5219063	+	5215053	5219063	A5SS	ENSMUST00000118193.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	ENSMUSG00000022151.17	Ttc33	chr15	protein_coding	tetratricopeptide repeat domain 33
novel_NIR_6685	chr15	5218973	5219063	+	5215874	5219063	A5SS	ENSMUST00000144653.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.12	1	7	1	7	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000022151.17	Ttc33	chr15	protein_coding	tetratricopeptide repeat domain 33
novel_NIR_6686	chr15	5218973	5219063	+	5216894	5219063	A5SS	ENSMUST00000141167.2	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022151.17	Ttc33	chr15	protein_coding	tetratricopeptide repeat domain 33
novel_NIR_6687	chr15	52970967	53208201	-	52970967	53059535	5pMXE	ENSMUST00000110244.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061731.10	Ext1	chr15	protein_coding	exostosin glycosyltransferase 1
novel_NIR_6688	chr15	54739156	54742944	-	54739156	54741172	A5SS&ES	ENSMUST00000173516.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022425.17	Enpp2	chr15	protein_coding	ectonucleotide pyrophosphatase/phosphodiesterase 2
novel_NIR_6689	chr15	54783094	54815939	-	54783094	54783325	5pMXE	ENSMUST00000041591.16	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	15	0	15	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.00	0	3	0	3	n	0.12	1	7	1	7	n	0.08	1	11	1	11	n	-	-	-	-	-	-	0.27	3	8	3	8	y	0.50	2	2	2	2	y	0.29	2	5	2	5	y	ENSMUSG00000022425.17	Enpp2	chr15	protein_coding	ectonucleotide pyrophosphatase/phosphodiesterase 2
novel_NIR_6690	chr15	54783094	54815939	-	54783094	54785967	5pMXE	ENSMUST00000228222.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	ENSMUSG00000022425.17	Enpp2	chr15	protein_coding	ectonucleotide pyrophosphatase/phosphodiesterase 2
novel_NIR_6691	chr15	54817581	54833659	+	54817581	54827409	3pMXE	ENSMUST00000181704.2	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000097286.3	Gm26684	chr15	lncRNA	predicted gene, 26684
novel_NIR_6692	chr15	54963588	54974516	-	54963588	54975739	A5SS	ENSMUST00000100659.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000053749.13	Gm9920	chr15	lncRNA	predicted gene 9920
novel_NIR_6693	chr15	54963588	54974516	-	54963588;54972373	54972309;54974516	ES	ENSMUST00000110230.8	novel	0.00	0	1.0	0	0;2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	0.00	0	1.0	0	2;0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	0.5	0	0;1	n	-	-	-	-	-	-	0.00	0	1.0	0	2;0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000053749.13	Gm9920	chr15	lncRNA	predicted gene 9920
novel_NIR_6694	chr15	55081669	55082424	+	55081669	55083535	A3SS	ENSMUST00000100660.11	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022419.17	Deptor	chr15	protein_coding	DEP domain containing MTOR-interacting protein
novel_NIR_6695	chr15	55434785	55436287	+	55434785	55436292	A3SS	ENSMUST00000022998.14	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.14	1	6	1	6	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	ENSMUSG00000022369.14	Mtbp	chr15	protein_coding	Mdm2, transformed 3T3 cell double minute p53 binding protein
novel_NIR_6696	chr15	55449880	55450072	+	55449880	55452052	A3SS	ENSMUST00000022998.14	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.29	2	5	2	5	y	1.00	1	0	1	0	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000022369.14	Mtbp	chr15	protein_coding	Mdm2, transformed 3T3 cell double minute p53 binding protein
novel_NIR_6697	chr15	55450329	55452052	+	55449880	55452052	A5SS	ENSMUST00000022998.14	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.43	3	4	3	4	y	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	4	0	4	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000022369.14	Mtbp	chr15	protein_coding	Mdm2, transformed 3T3 cell double minute p53 binding protein
novel_NIR_6698	chr15	55481144	55483108	+	55481144	55483034	A3SS	ENSMUST00000022998.14	novel	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	ENSMUSG00000022369.14	Mtbp	chr15	protein_coding	Mdm2, transformed 3T3 cell double minute p53 binding protein
novel_NIR_6699	chr15	55539839	55655430	-	55654668	55655430	3pMXE	ENSMUST00000110200.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000060429.13	Sntb1	chr15	protein_coding	syntrophin, basic 1
novel_NIR_6700	chr15	55612787	55655430	-	55654668	55655430	3pMXE	ENSMUST00000110200.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000060429.13	Sntb1	chr15	protein_coding	syntrophin, basic 1
novel_NIR_6701	chr15	57743460	57746092	-	57743460	57745530	A5SS&ES	ENSMUST00000226911.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	4	0	4	0	n	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000022365.7	Derl1	chr15	protein_coding	Der1-like domain family, member 1
novel_NIR_6702	chr15	57743460;57746343	57746092;57746831	-	57743460;57745629	57745530;57746831	MXE	ENSMUST00000226911.2	novel	1.00	0.5	0.0	1;0	0;0	n	1.00	0.5	0.0	1;0	0;0	n	1.00	3.5	0.0	4;3	0;0	y	1.00	1.0	0.0	2;0	0;0	n	1.00	2.0	0.0	4;0	0;0	n	1.00	0.5	0.0	1;0	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1.0	0.0	2;0	0;0	n	-	-	-	-	-	-	ENSMUSG00000022365.7	Derl1	chr15	protein_coding	Der1-like domain family, member 1
novel_NIR_6703	chr15	57746942	57755261	-	57746942	57753738	5pMXE	ENSMUST00000226911.2	novel	0.00	0	3	0	3	n	0.83	5	1	5	1	y	0.50	3	3	3	3	y	0.50	2	2	2	2	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.50	5	5	5	5	y	1.00	1	0	1	0	n	0.83	5	1	5	1	y	0.50	1	1	1	1	n	0.50	1	1	1	1	n	ENSMUSG00000022365.7	Derl1	chr15	protein_coding	Der1-like domain family, member 1
novel_NIR_6704	chr15	57831203	57831305	+	57827320	57831305	A5SS	ENSMUST00000022992.13	novel	0.50	2	2	2	2	y	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	ENSMUSG00000022364.15	Tbc1d31	chr15	protein_coding	TBC1 domain family, member 31
novel_NIR_6705	chr15	57902819	57927451	-	57918478	57927451	3pMXE	ENSMUST00000177276.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.33	2	4	2	4	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000022361.15	Zhx1	chr15	protein_coding	zinc fingers and homeoboxes 1
novel_NIR_6706	chr15	57912181	57915002	-	57912181	57932715	A5SS	ENSMUST00000177504.9	novel	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.40	2	3	2	3	y	ENSMUSG00000022362.14	Gm29394	chr15	protein_coding	predicted gene 29394
novel_NIR_6707	chr15	57995737	57997661	-	57995737	57998203	A5SS	ENSMUST00000038194.5	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022360.9	Atad2	chr15	protein_coding	ATPase family, AAA domain containing 2
novel_NIR_6708	chr15	58017409	58018535	+	58017100	58018535	A5SS	ENSMUST00000227142.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000022359.11	Wdyhv1	chr15	protein_coding	WDYHV motif containing 1
novel_NIR_6709	chr15	58662058	58669050	-	58662058;58666258	58666191;58669050	ES	ENSMUST00000072113.6	novel	0.00	0	10.0	0	12;8	n	0.00	0	2.5	0	2;3	n	0.00	0	14.0	0	15;13	n	0.00	0	9.0	0	8;10	n	0.00	0	8.5	0	12;5	n	0.00	0	3.0	0	3;3	n	0.00	0	13.0	0	16;10	n	0.00	0	5.0	0	5;5	n	0.00	0	3.5	0	3;4	n	0.40	4	6.0	4	8;4	y	0.22	1	3.5	1	3;4	n	0.00	0	8.0	0	8;8	n	ENSMUSG00000062373.9	Tmem65	chr15	protein_coding	transmembrane protein 65
novel_NIR_6710	chr15	58761343	58761739	+	58761343	58808117	A3SS	ENSMUST00000228787.2	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	ENSMUSG00000115463.2	Gm49356	chr15	protein_coding	predicted gene, 49356
novel_NIR_6711	chr15	58770434	58808117	+	58761343	58808117	A5SS	ENSMUST00000228787.2	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.23	3	10	3	10	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	ENSMUSG00000115463.2	Gm49356	chr15	protein_coding	predicted gene, 49356
novel_NIR_6712	chr15	58777660	58781426	-	58777660	58788001	A5SS	ENSMUST00000226707.2	novel	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	ENSMUSG00000050891.11	Tatdn1	chr15	protein_coding	TatD DNase domain containing 1
novel_NIR_6713	chr15	58793266	58794156	-	58793266	58795678	A5SS	ENSMUST00000226835.2	novel	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.44	4	5	4	5	y	0.00	0	1	0	1	n	0.14	1	6	1	6	n	0.50	3	3	3	3	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.25	1	3	1	3	n	0.67	2	1	2	1	y	ENSMUSG00000050891.11	Tatdn1	chr15	protein_coding	TatD DNase domain containing 1
novel_NIR_6714	chr15	58793266	58794156	-	58793266	58798285	A5SS	ENSMUST00000227540.2	novel	0.14	1	6	1	6	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.40	4	6	4	6	y	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	3	0	3	0	y	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.25	2	6	2	6	y	ENSMUSG00000050891.11	Tatdn1	chr15	protein_coding	TatD DNase domain containing 1
novel_NIR_6715	chr15	58805672	58808117	+	58761343	58808117	A5SS	ENSMUST00000228787.2	novel	0.20	1	4	1	4	n	0.50	2	2	2	2	y	1.00	1	0	1	0	n	0.67	2	1	2	1	y	0.25	1	3	1	3	n	0.33	3	6	3	6	y	0.20	1	4	1	4	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.50	4	4	4	4	y	0.17	1	5	1	5	n	ENSMUSG00000115463.2	Gm49356	chr15	protein_coding	predicted gene, 49356
novel_NIR_6716	chr15	58808035	58808117	+	58761343	58808117	A5SS	ENSMUST00000228787.2	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.57	4	3	4	3	y	0.00	0	6	0	6	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.09	1	10	1	10	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	ENSMUSG00000115463.2	Gm49356	chr15	protein_coding	predicted gene, 49356
novel_NIR_6717	chr15	58815979	58817166	-	58815979	58817211	A5SS	ENSMUST00000080371.8	novel	0.11	18	150	18	150	n	0.10	13	119	13	119	n	0.15	31	172	31	172	y	0.14	29	175	29	175	n	0.15	42	234	42	234	y	0.11	13	101	13	101	n	0.18	40	182	40	182	y	0.16	21	108	21	108	y	0.18	24	112	24	112	y	0.20	43	169	43	169	y	0.13	18	121	18	121	n	0.18	47	210	47	210	y	ENSMUSG00000022353.11	Mtss1	chr15	protein_coding	MTSS I-BAR domain containing 1
novel_NIR_6718	chr15	58844409	58857340	-	58844409	58912347	A5SS	ENSMUST00000226976.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022353.11	Mtss1	chr15	protein_coding	MTSS I-BAR domain containing 1
novel_NIR_6719	chr15	58844409	58870808	-	58844409	58912347	A5SS	ENSMUST00000226976.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000022353.11	Mtss1	chr15	protein_coding	MTSS I-BAR domain containing 1
novel_NIR_6720	chr15	58844409	58871461	-	58844409	58912347	A5SS	ENSMUST00000226976.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.83	5	1	5	1	y	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000022353.11	Mtss1	chr15	protein_coding	MTSS I-BAR domain containing 1
novel_NIR_6721	chr15	58844409	58890958	-	58844409	58912347	A5SS	ENSMUST00000226976.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.83	5	1	5	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022353.11	Mtss1	chr15	protein_coding	MTSS I-BAR domain containing 1
novel_NIR_6722	chr15	58844409	58907788	-	58844409	58912347	A5SS	ENSMUST00000226976.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022353.11	Mtss1	chr15	protein_coding	MTSS I-BAR domain containing 1
novel_NIR_6723	chr15	58844409	58916250	-	58844409	58912347	5pMXE	ENSMUST00000226976.2	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.86	6	1	6	1	y	1.00	11	0	11	0	y	1.00	1	0	1	0	n	1.00	6	0	6	0	y	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	9	0	9	0	y	1.00	6	0	6	0	y	1.00	6	0	6	0	y	1.00	5	0	5	0	y	ENSMUSG00000022353.11	Mtss1	chr15	protein_coding	MTSS I-BAR domain containing 1
novel_NIR_6724	chr15	59240309	59241729	-	59240309;59241147	59241002;59241729	ES	ENSMUST00000022976.6	novel	0.00	0	18.5	0	17;20	n	0.11	1	8.5	1	16;1	n	0.00	0	40.5	0	45;36	n	0.03	1	28.0	1	30;26	n	0.00	0	34.0	0	38;30	n	0.08	1	12.0	1	11;13	n	0.00	0	20.5	0	25;16	n	0.05	1	20.5	1	21;20	n	0.05	1	20.0	1	26;14	n	0.00	0	29.5	0	30;29	n	0.18	4	18.5	4	23;14	y	0.04	1	22.5	1	29;16	n	ENSMUSG00000022350.8	Washc5	chr15	protein_coding	WASH complex subunit 5
novel_NIR_6725	chr15	59440741	59463546	+	59368703	59463546	A5SS	ENSMUST00000227173.2	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000059586.11	Nsmce2	chr15	protein_coding	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase
novel_NIR_6726	chr15	59525143	59526085	+	59523620	59526085	A5SS	ENSMUST00000067543.8	novel	0.04	2	44	2	44	n	0.06	3	49	3	49	n	0.00	0	86	0	86	n	0.03	2	61	2	61	n	0.00	0	67	0	67	n	0.00	0	32	0	32	n	0.03	2	75	2	75	n	0.06	2	31	2	31	n	0.15	6	34	6	34	y	0.03	3	88	3	88	n	0.00	0	31	0	31	n	0.05	3	55	3	55	n	ENSMUSG00000032501.10	Trib1	chr15	protein_coding	tribbles pseudokinase 1
novel_NIR_6727	chr15	62021201	62047316	+	61910050	62047316	A5SS	ENSMUST00000182075.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000097039.9	Pvt1	chr15	lncRNA	Pvt1 oncogene
novel_NIR_6728	chr15	62021201	62047316	+	61979314	62047316	A5SS	ENSMUST00000182956.8	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000097039.9	Pvt1	chr15	lncRNA	Pvt1 oncogene
novel_NIR_6729	chr15	62021201	62047316	+	61979360	62047316	A5SS	ENSMUST00000181657.9	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000097039.9	Pvt1	chr15	lncRNA	Pvt1 oncogene
novel_NIR_6730	chr15	62021201	62047316	+	62021201	62114023	A3SS	ENSMUST00000181416.9	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000097039.9	Pvt1	chr15	lncRNA	Pvt1 oncogene
novel_NIR_6731	chr15	62021201	62047316	+	62021201;62031977	62031846;62047316	ES	ENSMUST00000180432.9	novel	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	1	0.5	1	1;0	n	0.00	0	0.5	0	0;1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	0.5	0	0;1	n	ENSMUSG00000097039.9	Pvt1	chr15	lncRNA	Pvt1 oncogene
novel_NIR_6732	chr15	62047397	62047613	+	62047397	62047677	A3SS	ENSMUST00000182956.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000097039.9	Pvt1	chr15	lncRNA	Pvt1 oncogene
novel_NIR_6733	chr15	62047397	62047613	+	62047397	62114023	A3SS	ENSMUST00000182075.8	novel	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000097039.9	Pvt1	chr15	lncRNA	Pvt1 oncogene
novel_NIR_6734	chr15	62047397	62094586	+	62047397	62047677	A3SS&ES	ENSMUST00000182956.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000097039.9	Pvt1	chr15	lncRNA	Pvt1 oncogene
novel_NIR_6735	chr15	62047397	62094586	+	62047397	62114023	A3SS	ENSMUST00000182075.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000097039.9	Pvt1	chr15	lncRNA	Pvt1 oncogene
novel_NIR_6736	chr15	63821976	63842779	-	63821976	63828449	A5SS&ES	ENSMUST00000228908.2	novel	0.17	2	10	2	10	y	0.46	6	7	6	7	y	0.25	10	30	10	30	y	0.15	2	11	2	11	y	0.25	3	9	3	9	y	0.22	2	7	2	7	y	0.00	0	18	0	18	n	0.00	0	3	0	3	n	0.40	4	6	4	6	y	0.17	2	10	2	10	y	0.00	0	6	0	6	n	0.11	2	17	2	17	n	ENSMUSG00000022378.15	Cyrib	chr15	protein_coding	CYFIP related Rac1 interactor B
novel_NIR_6737	chr15	63821976	63842779	-	63821976;63828531	63828449;63842779	ES	ENSMUST00000063838.11	novel	0.24	2	6.5	2	10;3	y	0.63	6	3.5	6	7;0	y	0.29	10	24.0	10	30;18	y	0.22	2	7.0	2	11;3	y	0.32	3	6.5	3	9;4	y	0.31	2	4.5	2	7;2	y	0.00	0	11.5	0	18;5	n	0.00	0	2.5	0	3;2	n	0.47	4	4.5	4	6;3	y	0.21	2	7.5	2	10;5	y	0.00	0	4.5	0	6;3	n	0.17	2	10.0	2	17;3	y	ENSMUSG00000022378.15	Cyrib	chr15	protein_coding	CYFIP related Rac1 interactor B
novel_NIR_6738	chr15	63821976	63842779	-	63821976;63829516	63829434;63842779	ES	ENSMUST00000226675.2	novel	0.40	2	3.0	2	3;3	y	0.80	6	1.5	6	0;3	y	0.67	10	5.0	10	6;4	y	0.25	2	6.0	2	6;6	y	0.25	3	9.0	3	8;10	y	0.57	2	1.5	2	0;3	y	0.00	0	5.0	0	5;5	n	0.00	0	3.5	0	2;5	n	0.57	4	3.0	4	4;2	y	0.33	2	4.0	2	2;6	y	0.00	0	3.5	0	2;5	n	0.27	2	5.5	2	4;7	y	ENSMUSG00000022378.15	Cyrib	chr15	protein_coding	CYFIP related Rac1 interactor B
novel_NIR_6739	chr15	63829516	63869747	-	63829516	63842779	A5SS&ES	ENSMUST00000227024.2	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.09	1	10	1	10	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.22	2	7	2	7	y	ENSMUSG00000022378.15	Cyrib	chr15	protein_coding	CYFIP related Rac1 interactor B
novel_NIR_6740	chr15	63829516	63869747	-	63842817	63869747	A3SS&ES	ENSMUST00000164532.3	novel	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	21	0	21	n	0.00	0	6	0	6	n	0.08	1	11	1	11	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.12	1	7	1	7	n	0.00	0	8	0	8	n	0.18	2	9	2	9	y	ENSMUSG00000022378.15	Cyrib	chr15	protein_coding	CYFIP related Rac1 interactor B
novel_NIR_6741	chr15	6474964	6487660	+	6474964	6483696	A3SS&ES	ENSMUST00000128097.3	novel	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	20	0	20	n	0.00	0	26	0	26	n	0.00	0	5	0	5	n	0.00	0	28	0	28	n	0.00	0	5	0	5	n	0.32	13	28	13	28	y	0.00	0	44	0	44	n	0.00	0	25	0	25	n	0.00	0	41	0	41	n	ENSMUSG00000022149.19	C9	chr15	protein_coding	complement component 9
novel_NIR_6742	chr15	6521020	6537831	+	6521020	6527913	3pMXE	ENSMUST00000147905.2	novel	0.33	15	30	15	30	y	0.15	8	45	8	45	y	0.22	4	14	4	14	y	0.11	4	33	4	33	n	0.29	16	40	16	40	y	0.13	2	13	2	13	n	0.13	6	40	6	40	n	0.31	4	9	4	9	y	0.16	7	38	7	38	y	0.20	16	64	16	64	y	0.21	16	59	16	59	y	0.14	9	57	9	57	n	ENSMUSG00000022149.19	C9	chr15	protein_coding	complement component 9
novel_NIR_6743	chr15	65666687	65687184	+	65682173	65687184	5pMXE	ENSMUST00000211878.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	ENSMUSG00000015002.19	Efr3a	chr15	protein_coding	EFR3 homolog A
novel_NIR_6744	chr15	66502919	66504555	+	66502894	66504555	A5SS	ENSMUST00000229033.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000072501.6	Phf20l1	chr15	protein_coding	PHD finger protein 20-like 1
novel_NIR_6745	chr15	6674373	6676118	+	6673244	6676118	A5SS	ENSMUST00000163073.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	ENSMUSG00000022148.17	Fyb	chr15	protein_coding	FYN binding protein
novel_NIR_6746	chr15	6674373	6676118	+	6674380	6676118	A5SS	ENSMUST00000090461.12	novel	0.00	0	15	0	15	n	0.00	0	16	0	16	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.07	2	27	2	27	n	0.00	0	12	0	12	n	0.00	0	21	0	21	n	0.00	0	9	0	9	n	0.27	3	8	3	8	y	0.00	0	6	0	6	n	0.12	1	7	1	7	n	0.07	1	14	1	14	n	ENSMUSG00000022148.17	Fyb	chr15	protein_coding	FYN binding protein
novel_NIR_6747	chr15	66986206	67024892	-	66985739	67024892	A3SS	ENSMUST00000229742.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000013846.11	St3gal1	chr15	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 1
novel_NIR_6748	chr15	67000456	67048481	-	67000456	67000698	5pMXE	ENSMUST00000230150.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000013846.11	St3gal1	chr15	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 1
novel_NIR_6749	chr15	67018151	67024892	-	66985739	67024892	A3SS	ENSMUST00000229742.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000013846.11	St3gal1	chr15	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 1
novel_NIR_6750	chr15	67018193	67024892	-	66985739	67024892	A3SS	ENSMUST00000229742.2	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	5	0	5	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	7	0	7	0	y	ENSMUSG00000013846.11	St3gal1	chr15	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 1
novel_NIR_6751	chr15	67018214	67024892	-	66985739	67024892	A3SS	ENSMUST00000229742.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000013846.11	St3gal1	chr15	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 1
novel_NIR_6752	chr15	67034900	67046919	-	67034900	67048481	A5SS	ENSMUST00000229742.2	novel	0.00	0	23	0	23	n	0.21	3	11	3	11	y	0.00	0	34	0	34	n	0.00	0	30	0	30	n	0.00	0	47	0	47	n	0.00	0	25	0	25	n	0.00	0	25	0	25	n	0.00	0	8	0	8	n	0.00	0	27	0	27	n	0.00	0	35	0	35	n	0.00	0	12	0	12	n	0.00	0	25	0	25	n	ENSMUSG00000013846.11	St3gal1	chr15	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 1
novel_NIR_6753	chr15	6780202	6785974	+	6780202	6785942	A3SS	ENSMUST00000228918.2	novel	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.18	2	9	2	9	y	-	-	-	-	-	-	0.00	0	6	0	6	n	0.08	1	12	1	12	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	12	0	12	n	ENSMUSG00000050310.10	Rictor	chr15	protein_coding	RPTOR independent companion of MTOR, complex 2
novel_NIR_6754	chr15	67984947	67990785	-	67982411	67990785	A3SS	ENSMUST00000162054.9	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.00	0	6	0	6	n	ENSMUSG00000022335.18	Zfat	chr15	protein_coding	zinc finger and AT hook domain containing
novel_NIR_6755	chr15	6816862;6817202	6817131;6818912	+	6816862	6818912	cassetteExon	ENSMUST00000061656.8	novel	0.09	0.5	5	1;0	5	n	0.00	0.0	9	0;0	9	n	0.36	5.0	9	4;6	9	y	0.14	0.5	3	1;0	3	n	0.12	1.5	11	2;1	11	n	0.00	0.0	10	0;0	10	n	0.04	0.5	13	0;1	13	n	0.23	1.5	5	0;3	5	n	0.06	0.5	8	1;0	8	n	0.14	2.0	12	3;1	12	n	0.05	0.5	9	1;0	9	n	0.11	1.5	12	1;2	12	n	ENSMUSG00000050310.10	Rictor	chr15	protein_coding	RPTOR independent companion of MTOR, complex 2
novel_NIR_6756	chr15	6817202	6818912	+	6816862	6818912	A5SS	ENSMUST00000061656.8	novel	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.40	6	9	6	9	n	0.00	0	3	0	3	n	0.08	1	11	1	11	n	0.00	0	10	0	10	n	0.07	1	13	1	13	n	0.38	3	5	3	5	y	0.00	0	8	0	8	n	0.08	1	12	1	12	n	0.00	0	9	0	9	n	0.14	2	12	2	12	n	ENSMUSG00000050310.10	Rictor	chr15	protein_coding	RPTOR independent companion of MTOR, complex 2
novel_NIR_6757	chr15	6846469	6850049	-	6846469	6850402	A5SS	ENSMUST00000022746.13	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	49	0	49	n	0.40	2	3	2	3	y	0.00	0	30	0	30	n	0.00	0	17	0	17	n	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	ENSMUSG00000022146.13	Osmr	chr15	protein_coding	oncostatin M receptor
novel_NIR_6758	chr15	6853528	6853954	-	6853137	6853954	A3SS	ENSMUST00000022746.13	novel	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	42	0	42	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.40	2	3	2	3	y	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	ENSMUSG00000022146.13	Osmr	chr15	protein_coding	oncostatin M receptor
novel_NIR_6759	chr15	6856743	6858114	-	6856792	6858114	A3SS	ENSMUST00000022746.13	novel	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	21	0	21	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.27	3	8	3	8	y	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000022146.13	Osmr	chr15	protein_coding	oncostatin M receptor
novel_NIR_6760	chr15	7159307	7183593	+	7159307	7162096	3pMXE	ENSMUST00000226826.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000054263.13	Lifr	chr15	protein_coding	LIF receptor alpha
novel_NIR_6761	chr15	7159307;7183766	7183593;7183868	+	7159307;7160519	7160382;7183868	MXE	ENSMUST00000164529.9	novel	0.00	0.0	0.5	0;0	1;0	n	1.00	1.0	0.0	0;2	0;0	n	0.00	0.0	0.5	0;0	1;0	n	0.57	2.0	1.5	0;4	2;1	n	1.00	1.5	0.0	0;3	0;0	n	-	-	-	-	-	-	1.00	0.5	0.0	0;1	0;0	n	1.00	2.0	0.0	0;4	0;0	n	0.92	5.5	0.5	0;11	1;0	n	1.00	7.5	0.0	2;13	0;0	y	0.93	6.5	0.5	0;13	1;0	n	1.00	7.0	0.0	0;14	0;0	n	ENSMUSG00000054263.13	Lifr	chr15	protein_coding	LIF receptor alpha
novel_NIR_6762	chr15	7160499	7162096	+	7159307	7162096	A5SS	ENSMUST00000226826.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000054263.13	Lifr	chr15	protein_coding	LIF receptor alpha
novel_NIR_6763	chr15	7160519	7162096	+	7159307	7162096	A5SS	ENSMUST00000226826.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000054263.13	Lifr	chr15	protein_coding	LIF receptor alpha
novel_NIR_6764	chr15	7160519	7162096	+	7160519	7183868	A3SS	ENSMUST00000164529.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000054263.13	Lifr	chr15	protein_coding	LIF receptor alpha
novel_NIR_6765	chr15	7183766	7183868	+	7120229	7183868	A5SS	ENSMUST00000228723.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	11	0	11	0	y	1.00	13	0	13	0	y	1.00	13	0	13	0	y	1.00	14	0	14	0	y	ENSMUSG00000054263.13	Lifr	chr15	protein_coding	LIF receptor alpha
novel_NIR_6766	chr15	7183766	7183868	+	7159307	7183868	A5SS	ENSMUST00000067190.12	novel	0.00	0	35	0	35	n	0.06	2	31	2	31	n	0.00	0	36	0	36	n	0.06	4	67	4	67	n	0.03	3	93	3	93	n	0.00	0	25	0	25	n	0.02	1	54	1	54	n	0.11	4	31	4	31	n	0.17	11	54	11	54	n	0.12	13	100	13	100	n	0.17	13	64	13	64	y	0.13	14	94	14	94	n	ENSMUSG00000054263.13	Lifr	chr15	protein_coding	LIF receptor alpha
novel_NIR_6767	chr15	7183766	7183868	+	7160519	7183868	A5SS	ENSMUST00000164529.9	novel	-	-	-	-	-	-	1.00	2	0	2	0	n	-	-	-	-	-	-	0.80	4	1	4	1	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	n	1.00	11	0	11	0	n	1.00	13	0	13	0	n	1.00	13	0	13	0	y	1.00	14	0	14	0	n	ENSMUSG00000054263.13	Lifr	chr15	protein_coding	LIF receptor alpha
novel_NIR_6768	chr15	7183766	7183868	+	7170064	7183868	A5SS	ENSMUST00000226934.2	novel	0.00	0	49	0	49	n	0.08	2	22	2	22	n	0.00	0	3	0	3	n	0.03	4	137	4	137	n	0.12	3	22	3	22	n	0.00	0	4	0	4	n	0.06	1	15	1	15	n	0.80	4	1	4	1	y	0.09	11	106	11	106	n	0.08	13	147	13	147	n	0.12	13	91	13	91	n	0.13	14	96	14	96	n	ENSMUSG00000054263.13	Lifr	chr15	protein_coding	LIF receptor alpha
novel_NIR_6769	chr15	7214299	7214488	+	7214299	7215047	A3SS	ENSMUST00000067190.12	novel	0.43	13	17	13	17	y	0.55	6	5	6	5	y	0.12	1	7	1	7	n	0.00	0	23	0	23	n	0.17	4	19	4	19	y	0.00	0	6	0	6	n	0.20	2	8	2	8	y	0.00	0	6	0	6	n	0.03	1	29	1	29	n	0.10	4	37	4	37	n	0.19	5	21	5	21	y	0.11	3	25	3	25	n	ENSMUSG00000054263.13	Lifr	chr15	protein_coding	LIF receptor alpha
novel_NIR_6770	chr15	73202864	73236890	-	73202864	73266497	A5SS	ENSMUST00000226791.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022607.19	Ptk2	chr15	protein_coding	PTK2 protein tyrosine kinase 2
novel_NIR_6771	chr15	73237044	73263608	-	73215208	73263608	A3SS	ENSMUST00000228180.3	novel	0.33	1	2	1	2	n	1.00	2	0	2	0	y	0.17	1	5	1	5	n	0.17	1	5	1	5	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.80	4	1	4	1	y	ENSMUSG00000022607.19	Ptk2	chr15	protein_coding	PTK2 protein tyrosine kinase 2
novel_NIR_6772	chr15	73237044	73263608	-	73237044	73266497	A5SS	ENSMUST00000227569.2	novel	0.50	1	1	1	1	n	1.00	2	0	2	0	y	0.25	1	3	1	3	n	0.11	1	8	1	8	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000022607.19	Ptk2	chr15	protein_coding	PTK2 protein tyrosine kinase 2
novel_NIR_6773	chr15	73477925	73491888	-	73477925	73489158	5pMXE	ENSMUST00000076224.12	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000079020.10	Slc45a4	chr15	protein_coding	solute carrier family 45, member 4
novel_NIR_6774	chr15	73477925	73491888	-	73477925	73496175	A5SS	ENSMUST00000151288.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000079020.10	Slc45a4	chr15	protein_coding	solute carrier family 45, member 4
novel_NIR_6775	chr15	73477925	73491888	-	73477925	73516743	A5SS	ENSMUST00000150409.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000079020.10	Slc45a4	chr15	protein_coding	solute carrier family 45, member 4
novel_NIR_6776	chr15	73477925	73491888	-	73477925	73517343	A5SS	ENSMUST00000130765.2	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000079020.10	Slc45a4	chr15	protein_coding	solute carrier family 45, member 4
novel_NIR_6777	chr15	73620314	73621118	+	73620314	73622978	A3SS	ENSMUST00000053232.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	8	0	8	n	-	-	-	-	-	-	0.06	4	58	4	58	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	ENSMUSG00000059895.14	Ptp4a3	chr15	protein_coding	protein tyrosine phosphatase 4a3
novel_NIR_6778	chr15	73623613	73625605	+	73595364	73625605	A5SS	ENSMUST00000230864.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000059895.14	Ptp4a3	chr15	protein_coding	protein tyrosine phosphatase 4a3
novel_NIR_6779	chr15	74827566	74828237	+	74827566	74829264	A3SS	ENSMUST00000185863.7	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.33	2	4	2	4	y	0.40	2	3	2	3	y	0.25	1	3	1	3	n	0.50	3	3	3	3	y	0.00	0	9	0	9	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	ENSMUSG00000022587.15	Ly6e	chr15	protein_coding	lymphocyte antigen 6 complex, locus E
novel_NIR_6780	chr15	74828562	74829629	+	74827184	74829629	A5SS	ENSMUST00000187284.7	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022587.15	Ly6e	chr15	protein_coding	lymphocyte antigen 6 complex, locus E
novel_NIR_6781	chr15	74828562	74829629	+	74828562	74829626	A3SS	ENSMUST00000188042.2	novel	0.57	4	3	4	3	y	0.00	0	2	0	2	n	0.11	1	8	1	8	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000022587.15	Ly6e	chr15	protein_coding	lymphocyte antigen 6 complex, locus E
novel_NIR_6782	chr15	74828562	74829629	+	74829312	74829629	A5SS&ES	ENSMUST00000191145.7	novel	0.50	4	4	4	4	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000022587.15	Ly6e	chr15	protein_coding	lymphocyte antigen 6 complex, locus E
novel_NIR_6783	chr15	74829151	74829626	+	74827184	74829626	A5SS	ENSMUST00000187606.7	novel	1.00	7	0	7	0	y	0.75	3	1	3	1	y	1.00	5	0	5	0	y	0.91	10	1	10	1	y	1.00	1	0	1	0	n	0.86	6	1	6	1	y	0.89	8	1	8	1	y	0.67	2	1	2	1	y	0.80	4	1	4	1	y	1.00	4	0	4	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000022587.15	Ly6e	chr15	protein_coding	lymphocyte antigen 6 complex, locus E
novel_NIR_6784	chr15	74829151	74829626	+	74828562	74829626	A5SS	ENSMUST00000188042.2	novel	0.70	7	3	7	3	y	0.60	3	2	3	2	y	0.38	5	8	5	8	y	0.83	10	2	10	2	y	0.25	1	3	1	3	n	0.40	6	9	6	9	y	0.53	8	7	8	7	y	0.33	2	4	2	4	y	0.80	4	1	4	1	y	0.50	4	4	4	4	y	0.60	3	2	3	2	y	0.00	0	3	0	3	n	ENSMUSG00000022587.15	Ly6e	chr15	protein_coding	lymphocyte antigen 6 complex, locus E
novel_NIR_6785	chr15	74829151	74829626	+	74829312	74829626	A5SS&ES	ENSMUST00000185863.7	novel	0.44	7	9	7	9	y	0.50	3	3	3	3	y	0.25	5	15	5	15	y	0.48	10	11	10	11	y	0.07	1	14	1	14	n	0.40	6	9	6	9	y	0.47	8	9	8	9	n	0.18	2	9	2	9	y	0.25	4	12	4	12	y	0.50	4	4	4	4	y	1.00	3	0	3	0	y	0.00	0	8	0	8	n	ENSMUSG00000022587.15	Ly6e	chr15	protein_coding	lymphocyte antigen 6 complex, locus E
novel_NIR_6786	chr15	74868412	74869384	-	74868417	74869384	A3SS	ENSMUST00000189068.7	novel	0.00	0	28	0	28	n	0.00	0	20	0	20	n	0.00	0	63	0	63	n	0.00	0	13	0	13	n	0.00	0	28	0	28	n	0.00	0	22	0	22	n	0.00	0	86	0	86	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.17	3	15	3	15	y	0.00	0	13	0	13	n	0.00	0	8	0	8	n	ENSMUSG00000075602.11	Ly6a	chr15	protein_coding	lymphocyte antigen 6 complex, locus A
novel_NIR_6787	chr15	75141745	75148744	+	75141745	75143482	3pMXE	ENSMUST00000023247.13	novel	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000022583.13	Ly6f	chr15	protein_coding	lymphocyte antigen 6 complex, locus F
novel_NIR_6788	chr15	75514360	75515308	+	75514360	75515836	A3SS	ENSMUST00000184602.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000099034.8	2810039B14Rik	chr15	transcribed_unitary_pseudogene	RIKEN cDNA 2810039B14 gene
novel_NIR_6789	chr15	75514360	75515308	+	75514360	75517198	A3SS	ENSMUST00000183928.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000099034.8	2810039B14Rik	chr15	transcribed_unitary_pseudogene	RIKEN cDNA 2810039B14 gene
novel_NIR_6790	chr15	75681527	75700001	-	75681527	75684631	5pMXE	ENSMUST00000229000.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000075600.4	Zc3h3	chr15	protein_coding	zinc finger CCCH type containing 3
novel_NIR_6791	chr15	75681527	75700001	-	75681527	75699997	A5SS	ENSMUST00000229970.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000075600.4	Zc3h3	chr15	protein_coding	zinc finger CCCH type containing 3
novel_NIR_6792	chr15	75709512	75713699	-	75709512;75712413	75711105;75713699	ES	ENSMUST00000100538.4	novel	0.11	1	8.0	1	9;7	n	0.00	0	5.0	0	8;2	n	0.00	0	8.0	0	13;3	n	0.00	0	6.5	0	11;2	n	0.00	0	8.5	0	13;4	n	0.00	0	3.0	0	1;5	n	0.43	5	6.5	5	9;4	y	0.00	0	8.5	0	11;6	n	0.00	0	7.5	0	11;4	n	0.00	0	7.0	0	9;5	n	0.00	0	5.5	0	9;2	n	0.00	0	10.0	0	13;7	n	ENSMUSG00000075600.4	Zc3h3	chr15	protein_coding	zinc finger CCCH type containing 3
novel_NIR_6793	chr15	75763858	75764191	-	75763713	75764191	A3SS	ENSMUST00000229571.2	novel	1.00	1	0	1	0	n	0.25	1	3	1	3	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000022574.8	Naprt	chr15	protein_coding	nicotinate phosphoribosyltransferase
novel_NIR_6794	chr15	75773101	75781309	-	75773101	75781094	5pMXE	ENSMUST00000116440.9	novel	0.00	0	14	0	14	n	0.00	0	18	0	18	n	0.07	1	14	1	14	n	0.00	0	19	0	19	n	0.00	0	21	0	21	n	0.00	0	14	0	14	n	0.00	0	28	0	28	n	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.04	1	25	1	25	n	0.32	9	19	9	19	y	0.00	0	32	0	32	n	ENSMUSG00000055762.17	Eef1d	chr15	protein_coding	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
novel_NIR_6795	chr15	75773101	75781309	-	75773104	75781309	A3SS	ENSMUST00000144614.8	novel	0.00	0	7	0	7	n	0.00	0	4	0	4	n	1.00	1	0	1	0	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.12	1	7	1	7	n	0.64	9	5	9	5	y	0.00	0	7	0	7	n	ENSMUSG00000055762.17	Eef1d	chr15	protein_coding	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
novel_NIR_6796	chr15	75773101	75782310	-	75773101	75781094	5pMXE	ENSMUST00000116440.9	novel	0.00	0	14	0	14	n	0.00	0	18	0	18	n	0.46	12	14	12	14	y	0.10	2	19	2	19	n	0.57	28	21	28	21	y	0.00	0	14	0	14	n	0.20	7	28	7	28	y	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.38	15	25	15	25	y	0.14	3	19	3	19	n	0.22	9	32	9	32	y	ENSMUSG00000055762.17	Eef1d	chr15	protein_coding	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
novel_NIR_6797	chr15	75773104	75782071	-	75773104	75774528	5pMXE	ENSMUST00000137426.8	novel	1.00	3	0	3	0	y	0.86	6	1	6	1	y	0.75	3	1	3	1	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000055762.17	Eef1d	chr15	protein_coding	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
novel_NIR_6798	chr15	75773104	75782071	-	75773104	75781309	5pMXE	ENSMUST00000144614.8	novel	0.30	3	7	3	7	y	0.60	6	4	6	4	y	1.00	3	0	3	0	y	0.29	2	5	2	5	y	0.50	4	4	4	4	y	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	ENSMUSG00000055762.17	Eef1d	chr15	protein_coding	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
novel_NIR_6799	chr15	75773104	75782310	-	75773104	75774528	5pMXE	ENSMUST00000137426.8	novel	1.00	7	0	7	0	y	0.75	3	1	3	1	y	0.88	7	1	7	1	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	0.33	1	2	1	2	n	0.67	2	1	2	1	y	1.00	7	0	7	0	y	1.00	6	0	6	0	y	1.00	6	0	6	0	y	1.00	3	0	3	0	y	ENSMUSG00000055762.17	Eef1d	chr15	protein_coding	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
novel_NIR_6800	chr15	75773104	75782310	-	75773104	75781309	5pMXE	ENSMUST00000144614.8	novel	0.50	7	7	7	7	y	0.43	3	4	3	4	y	1.00	7	0	7	0	y	0.44	4	5	4	5	y	0.00	0	4	0	4	n	1.00	6	0	6	0	y	0.17	1	5	1	5	n	0.40	2	3	2	3	y	0.54	7	6	7	6	y	0.46	6	7	6	7	y	0.55	6	5	6	5	y	0.30	3	7	3	7	y	ENSMUSG00000055762.17	Eef1d	chr15	protein_coding	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
novel_NIR_6801	chr15	75773104	75782609	-	75773104	75774528	5pMXE	ENSMUST00000137426.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000055762.17	Eef1d	chr15	protein_coding	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
novel_NIR_6802	chr15	75773104	75782609	-	75773104	75781309	5pMXE	ENSMUST00000144614.8	novel	0.00	0	7	0	7	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.38	3	5	3	5	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	ENSMUSG00000055762.17	Eef1d	chr15	protein_coding	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
novel_NIR_6803	chr15	75798038	75798139	-	75798042	75798139	A3SS	ENSMUST00000229951.2	novel	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	5	0	5	n	0.17	2	10	2	10	y	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	12	0	12	n	ENSMUSG00000022570.8	Gfus	chr15	protein_coding	GDP-L-fucose synthase
novel_NIR_6804	chr15	75813300	75818972	+	75813008	75818972	A5SS	ENSMUST00000037260.8	novel	0.00	0	31	0	31	n	0.00	0	9	0	9	n	0.14	4	24	4	24	n	0.12	3	23	3	23	n	0.00	0	36	0	36	n	0.00	0	16	0	16	n	0.17	5	25	5	25	y	0.05	1	20	1	20	n	0.00	0	22	0	22	n	0.15	5	29	5	29	y	0.05	1	18	1	18	n	0.13	3	20	3	20	n	ENSMUSG00000050846.10	Zfp623	chr15	protein_coding	zinc finger protein 623
novel_NIR_6805	chr15	75841253	75841526	+	75841253	75844901	A3SS	ENSMUST00000147641.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.40	2	3	2	3	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000034429.16	Zfp707	chr15	protein_coding	zinc finger protein 707
novel_NIR_6806	chr15	75841253	75841526	+	75841253	75844972	A3SS	ENSMUST00000109967.10	novel	0.14	2	12	2	12	n	0.00	0	7	0	7	n	0.12	1	7	1	7	n	0.12	2	14	2	14	n	0.15	2	11	2	11	y	0.00	0	6	0	6	n	0.06	1	17	1	17	n	0.08	1	11	1	11	n	0.00	0	16	0	16	n	0.05	1	19	1	19	n	0.08	1	12	1	12	n	0.15	2	11	2	11	y	ENSMUSG00000034429.16	Zfp707	chr15	protein_coding	zinc finger protein 707
novel_NIR_6807	chr15	75841253	75844904	+	75841253	75844901	A3SS	ENSMUST00000147641.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.80	4	1	4	1	y	-	-	-	-	-	-	1.00	7	0	7	0	y	ENSMUSG00000034429.16	Zfp707	chr15	protein_coding	zinc finger protein 707
novel_NIR_6808	chr15	75841253	75844904	+	75841253	75844972	A3SS	ENSMUST00000109967.10	novel	0.08	1	12	1	12	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.15	2	11	2	11	y	0.00	0	6	0	6	n	0.06	1	17	1	17	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.17	4	19	4	19	y	0.00	0	12	0	12	n	0.39	7	11	7	11	y	ENSMUSG00000034429.16	Zfp707	chr15	protein_coding	zinc finger protein 707
novel_NIR_6809	chr15	75866792	75866893	+	75866792	75866921	A3SS	ENSMUST00000161961.2	novel	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.18	2	9	2	9	y	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.08	1	11	1	11	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	ENSMUSG00000063704.14	Mapk15	chr15	protein_coding	mitogen-activated protein kinase 15
novel_NIR_6810	chr15	75866792	75867083	+	75866792;75866950	75866921;75867083	ES	ENSMUST00000161961.2	novel	0.32	5	10.5	5	11;10	y	0.45	9	11.0	9	10;12	y	0.00	0	2.5	0	2;3	n	0.56	12	9.5	12	8;11	y	0.49	10	10.5	10	9;12	y	0.00	0	1.5	0	2;1	n	0.71	16	6.5	16	7;6	y	0.17	1	5.0	1	4;6	n	0.48	7	7.5	7	7;8	y	0.63	19	11.0	19	11;11	y	0.60	19	12.5	19	11;14	y	0.57	19	14.5	19	15;14	y	ENSMUSG00000063704.14	Mapk15	chr15	protein_coding	mitogen-activated protein kinase 15
novel_NIR_6811	chr15	75869017	75869329	+	75869017	75869419	A3SS	ENSMUST00000089669.6	novel	0.08	1	11	1	11	n	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	2	0	2	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	23	0	23	n	0.13	3	20	3	20	n	0.04	1	25	1	25	n	0.00	0	17	0	17	n	ENSMUSG00000063704.14	Mapk15	chr15	protein_coding	mitogen-activated protein kinase 15
novel_NIR_6812	chr15	75869017	75869391	+	75869017	75869419	A3SS	ENSMUST00000089669.6	novel	0.21	3	11	3	11	y	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.08	1	12	1	12	n	0.07	1	14	1	14	n	0.00	0	2	0	2	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	23	0	23	n	0.13	3	20	3	20	n	0.07	2	25	2	25	n	0.11	2	17	2	17	n	ENSMUSG00000063704.14	Mapk15	chr15	protein_coding	mitogen-activated protein kinase 15
novel_NIR_6813	chr15	75869017	75869454	+	75869017	75869419	A3SS	ENSMUST00000089669.6	novel	0.08	1	11	1	11	n	0.38	3	5	3	5	y	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	2	0	2	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.15	4	23	4	23	y	0.17	4	20	4	20	y	0.11	3	25	3	25	n	0.11	2	17	2	17	n	ENSMUSG00000063704.14	Mapk15	chr15	protein_coding	mitogen-activated protein kinase 15
novel_NIR_6814	chr15	75878411	75878727	-	75878411	75884646	A5SS	ENSMUST00000238313.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000046761.14	Fam83h	chr15	protein_coding	family with sequence similarity 83, member H
novel_NIR_6815	chr15	75878411	75878727	-	75878411	75886093	A5SS	ENSMUST00000060807.12	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000046761.14	Fam83h	chr15	protein_coding	family with sequence similarity 83, member H
novel_NIR_6816	chr15	75881794	75881873	+	75881794	75883185	A3SS	ENSMUST00000187868.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000102018.9	Iqank1	chr15	protein_coding	IQ motif and ankyrin repeat containing 1
novel_NIR_6817	chr15	75881794	75881873	+	75881794	75886752	A3SS	ENSMUST00000185810.8	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.17	1	5	1	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000102018.9	Iqank1	chr15	protein_coding	IQ motif and ankyrin repeat containing 1
novel_NIR_6818	chr15	75949548	75952699	-	75951338	75952699	A3SS&ES	ENSMUST00000230924.2	novel	0.60	3	2	3	2	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.80	4	1	4	1	y	ENSMUSG00000002524.18	Puf60	chr15	protein_coding	poly-U binding splicing factor 60
novel_NIR_6819	chr15	75956654	75957496	+	75955738	75957496	A5SS	ENSMUST00000227033.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000115332.2	Gm48952	chr15	lncRNA	predicted gene, 48952
novel_NIR_6820	chr15	75957656	75959403	+	75957606	75959403	A5SS	ENSMUST00000227033.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000115332.2	Gm48952	chr15	lncRNA	predicted gene, 48952
novel_NIR_6821	chr15	75962356	75962487	-	75962375	75962487	A3SS	ENSMUST00000227605.2	novel	0.90	9	1	9	1	y	1.00	3	0	3	0	y	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	6	0	6	0	y	0.91	10	1	10	1	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	7	0	7	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	ENSMUSG00000075590.5	Nrbp2	chr15	protein_coding	nuclear receptor binding protein 2
novel_NIR_6822	chr15	76004029	76004454	-	76004029;76004336	76004203;76004454	ES	ENSMUST00000054022.12	novel	0.00	0	15.5	0	23;8	n	0.09	2	20.5	2	28;13	n	0.00	0	8.0	0	11;5	n	0.14	3	18.5	3	22;15	n	0.06	2	33.5	2	46;21	n	0.00	0	11.5	0	16;7	n	0.07	2	26.5	2	36;17	n	0.18	3	14.0	3	21;7	y	0.19	5	21.5	5	27;16	y	0.13	4	26.5	4	32;21	n	0.00	0	24.0	0	34;14	n	0.00	0	27.0	0	33;21	n	ENSMUSG00000044361.17	BC024139	chr15	protein_coding	cDNA sequence BC024139
novel_NIR_6823	chr15	76004769	76005070	-	76004886	76005070	A3SS	ENSMUST00000146157.8	novel	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.56	5	4	5	4	y	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.14	1	6	1	6	n	1.00	3	0	3	0	y	0.29	2	5	2	5	y	0.00	0	4	0	4	n	ENSMUSG00000044361.17	BC024139	chr15	protein_coding	cDNA sequence BC024139
novel_NIR_6824	chr15	76004883	76005076	-	76004883	76005070	A5SS	ENSMUST00000054022.12	novel	0.00	0	26	0	26	n	0.00	0	18	0	18	n	0.00	0	12	0	12	n	0.21	5	19	5	19	y	0.00	0	31	0	31	n	0.00	0	9	0	9	n	0.28	10	26	10	26	y	0.06	1	16	1	16	n	0.04	1	25	1	25	n	0.08	4	45	4	45	n	0.06	2	34	2	34	n	0.09	3	30	3	30	n	ENSMUSG00000044361.17	BC024139	chr15	protein_coding	cDNA sequence BC024139
novel_NIR_6825	chr15	76005948	76008497	-	76005948;76008331	76008159;76008497	ES	ENSMUST00000146157.8	novel	0.05	1	18.0	1	19;17	n	0.23	7	23.0	7	26;20	y	0.00	0	13.5	0	11;16	n	0.19	5	21.0	5	22;20	y	0.22	7	25.5	7	23;28	y	0.18	2	9.0	2	8;10	y	0.22	8	28.5	8	26;31	y	0.06	1	16.0	1	12;20	n	0.36	11	19.5	11	17;22	y	0.15	5	28.5	5	29;28	y	0.24	7	22.0	7	23;21	y	0.07	2	26.0	2	23;29	n	ENSMUSG00000044361.17	BC024139	chr15	protein_coding	cDNA sequence BC024139
novel_NIR_6826	chr15	76005948	76008497	-	76008331	76008497	3pMXE	ENSMUST00000226663.2	novel	0.06	1	17	1	17	n	0.26	7	20	7	20	y	0.00	0	16	0	16	n	0.20	5	20	5	20	y	0.20	7	28	7	28	y	0.17	2	10	2	10	y	0.21	8	31	8	31	y	0.05	1	20	1	20	n	0.33	11	22	11	22	y	0.15	5	28	5	28	y	0.25	7	21	7	21	y	0.06	2	29	2	29	n	ENSMUSG00000044361.17	BC024139	chr15	protein_coding	cDNA sequence BC024139
novel_NIR_6827	chr15	76008614	76008748	-	76008614	76008773	A5SS	ENSMUST00000146157.8	novel	0.72	18	7	18	7	y	0.53	9	8	9	8	y	0.56	5	4	5	4	y	0.71	22	9	22	9	y	0.74	29	10	29	10	y	0.67	8	4	8	4	y	0.76	22	7	22	7	y	0.37	7	12	7	12	y	0.83	10	2	10	2	y	0.73	27	10	27	10	y	0.50	11	11	11	11	y	0.67	12	6	12	6	y	ENSMUSG00000044361.17	BC024139	chr15	protein_coding	cDNA sequence BC024139
novel_NIR_6828	chr15	76008614	76008770	-	76008614	76008773	A5SS	ENSMUST00000146157.8	novel	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.17	2	10	2	10	y	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	ENSMUSG00000044361.17	BC024139	chr15	protein_coding	cDNA sequence BC024139
novel_NIR_6829	chr15	76070699	76070811	-	76070714	76070811	A3SS	ENSMUST00000054449.14	novel	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	27	0	27	n	0.00	0	13	0	13	n	0.00	0	41	0	41	n	0.00	0	13	0	13	n	0.00	0	16	0	16	n	0.00	0	16	0	16	n	0.00	0	12	0	12	n	0.18	3	14	3	14	y	0.00	0	14	0	14	n	0.00	0	31	0	31	n	ENSMUSG00000022565.16	Plec	chr15	protein_coding	plectin
novel_NIR_6830	chr15	76079012	76103148	-	76079012	76079624	5pMXE	ENSMUST00000023226.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000022565.16	Plec	chr15	protein_coding	plectin
novel_NIR_6831	chr15	76079012	76103148	-	76079012	76082180	5pMXE	ENSMUST00000072692.11	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000022565.16	Plec	chr15	protein_coding	plectin
novel_NIR_6832	chr15	76079012	76103148	-	76079012	76083494	5pMXE	ENSMUST00000169438.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000022565.16	Plec	chr15	protein_coding	plectin
novel_NIR_6833	chr15	76079012	76103148	-	76079012	76083749	5pMXE	ENSMUST00000054449.14	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000022565.16	Plec	chr15	protein_coding	plectin
novel_NIR_6834	chr15	76079012	76103148	-	76079012	76084669	5pMXE	ENSMUST00000169108.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000022565.16	Plec	chr15	protein_coding	plectin
novel_NIR_6835	chr15	76079012	76103148	-	76079012	76089798	5pMXE	ENSMUST00000073418.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000022565.16	Plec	chr15	protein_coding	plectin
novel_NIR_6836	chr15	76079012	76103148	-	76079012	76092262	5pMXE	ENSMUST00000080857.12	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000022565.16	Plec	chr15	protein_coding	plectin
novel_NIR_6837	chr15	76079012	76103148	-	76079012	76092624	5pMXE	ENSMUST00000171562.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000022565.16	Plec	chr15	protein_coding	plectin
novel_NIR_6838	chr15	76079012	76103148	-	76079012	76093165	5pMXE	ENSMUST00000071869.12	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.75	3	1	3	1	y	ENSMUSG00000022565.16	Plec	chr15	protein_coding	plectin
novel_NIR_6839	chr15	76079012	76103148	-	76079012	76113558	A5SS	ENSMUST00000074834.12	novel	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	45	0	45	n	0.00	0	10	0	10	n	0.00	0	33	0	33	n	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.00	0	19	0	19	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.15	3	17	3	17	y	ENSMUSG00000022565.16	Plec	chr15	protein_coding	plectin
novel_NIR_6840	chr15	76079012	76103148	-	76079012	76115374	A5SS	ENSMUST00000089610.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000022565.16	Plec	chr15	protein_coding	plectin
novel_NIR_6841	chr15	76118072	76123103	-	76118072	76118334	5pMXE	ENSMUST00000169255.2	novel	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.40	2	3	2	3	y	0.00	0	5	0	5	n	ENSMUSG00000063268.13	Parp10	chr15	protein_coding	poly (ADP-ribose) polymerase family, member 10
novel_NIR_6842	chr15	76118453	76124249	-	76118072	76124249	A3SS	ENSMUST00000165738.8	novel	0.08	5	59	5	59	n	0.03	2	60	2	60	n	0.03	2	59	2	59	n	0.03	2	61	2	61	n	0.04	3	66	3	66	n	0.00	0	35	0	35	n	0.13	8	55	8	55	n	0.10	4	37	4	37	n	0.13	6	39	6	39	n	0.17	16	78	16	78	y	0.09	4	42	4	42	n	0.03	2	65	2	65	n	ENSMUSG00000063268.13	Parp10	chr15	protein_coding	poly (ADP-ribose) polymerase family, member 10
novel_NIR_6843	chr15	76125129	76125356	-	76125181	76125356	A3SS	ENSMUST00000166151.8	novel	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000063268.13	Parp10	chr15	protein_coding	poly (ADP-ribose) polymerase family, member 10
novel_NIR_6844	chr15	76186685	76186831	-	76186639	76186831	A3SS	ENSMUST00000163977.2	novel	0.00	0	3	0	3	n	1.00	3	0	3	0	y	0.00	0	8	0	8	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000022562.16	Oplah	chr15	protein_coding	5-oxoprolinase (ATP-hydrolysing)
novel_NIR_6845	chr15	76227892	76228311	+	76227892	76228457	A3SS	ENSMUST00000231045.2	novel	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000022551.9	Cyc1	chr15	protein_coding	cytochrome c-1
novel_NIR_6846	chr15	76227892	76228311	+	76227892	76228480	A3SS	ENSMUST00000229013.2	novel	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.08	1	12	1	12	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.40	4	6	4	6	y	0.00	0	5	0	5	n	0.00	0	4	0	4	n	ENSMUSG00000022551.9	Cyc1	chr15	protein_coding	cytochrome c-1
novel_NIR_6847	chr15	76227892	76228506	+	76227892	76228457	A3SS	ENSMUST00000231045.2	novel	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000022551.9	Cyc1	chr15	protein_coding	cytochrome c-1
novel_NIR_6848	chr15	76227892	76228506	+	76227892	76228480	A3SS	ENSMUST00000229013.2	novel	0.25	2	6	2	6	y	0.00	0	5	0	5	n	0.50	1	1	1	1	n	0.33	2	4	2	4	y	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.08	1	12	1	12	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.50	6	6	6	6	y	0.00	0	5	0	5	n	0.00	0	4	0	4	n	ENSMUSG00000022551.9	Cyc1	chr15	protein_coding	cytochrome c-1
novel_NIR_6849	chr15	76227892	76228506	+	76228224	76228506	5pMXE	ENSMUST00000230706.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022551.9	Cyc1	chr15	protein_coding	cytochrome c-1
novel_NIR_6850	chr15	76227892	76228801	+	76227892	76228457	A3SS&ES	ENSMUST00000231045.2	novel	0.00	0	2	0	2	n	1.00	12	0	12	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	13	0	13	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000022551.9	Cyc1	chr15	protein_coding	cytochrome c-1
novel_NIR_6851	chr15	76227892	76228801	+	76227892	76228480	A3SS&ES	ENSMUST00000229013.2	novel	0.00	0	6	0	6	n	0.71	12	5	12	5	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.81	13	3	13	3	y	0.00	0	2	0	2	n	0.00	0	12	0	12	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	ENSMUSG00000022551.9	Cyc1	chr15	protein_coding	cytochrome c-1
novel_NIR_6852	chr15	76228698	76228833	+	76228698	76228757	A3SS	ENSMUST00000229946.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	25	0	25	0	y	-	-	-	-	-	-	1.00	19	0	19	0	y	-	-	-	-	-	-	1.00	19	0	19	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	2	0	2	n	ENSMUSG00000022551.9	Cyc1	chr15	protein_coding	cytochrome c-1
novel_NIR_6853	chr15	76231378	76231459	-	76231408	76231459	A3SS	ENSMUST00000159429.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	8	0	8	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000022552.17	Sharpin	chr15	protein_coding	SHANK-associated RH domain interacting protein
novel_NIR_6854	chr15	76231787	76231864	-	76231771	76231864	A3SS	ENSMUST00000229536.2	novel	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	ENSMUSG00000022552.17	Sharpin	chr15	protein_coding	SHANK-associated RH domain interacting protein
novel_NIR_6855	chr15	76232391	76232501	-	76232422	76232501	A3SS	ENSMUST00000154477.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	7	0	7	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022552.17	Sharpin	chr15	protein_coding	SHANK-associated RH domain interacting protein
novel_NIR_6856	chr15	76232635	76234430	-	76232635	76234681	A5SS	ENSMUST00000230314.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.67	2	1	2	1	y	ENSMUSG00000022552.17	Sharpin	chr15	protein_coding	SHANK-associated RH domain interacting protein
novel_NIR_6857	chr15	76293175	76295758	+	76293175	76293663	3pMXE	ENSMUST00000162319.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022558.17	Mroh1	chr15	protein_coding	maestro heat-like repeat family member 1
novel_NIR_6858	chr15	76293175	76295758	+	76293175	76297102	A3SS	ENSMUST00000161305.8	novel	0.00	0	15	0	15	n	0.00	0	11	0	11	n	0.06	2	33	2	33	n	0.15	4	23	4	23	y	0.08	3	33	3	33	n	0.05	1	21	1	21	n	0.00	0	21	0	21	n	0.00	0	24	0	24	n	0.00	0	16	0	16	n	0.04	1	26	1	26	n	0.00	0	14	0	14	n	0.00	0	25	0	25	n	ENSMUSG00000022558.17	Mroh1	chr15	protein_coding	maestro heat-like repeat family member 1
novel_NIR_6859	chr15	76295838	76297102	+	76293175	76297102	A5SS	ENSMUST00000161305.8	novel	0.00	0	15	0	15	n	0.15	2	11	2	11	y	0.20	8	33	8	33	n	0.00	0	23	0	23	n	0.00	0	33	0	33	n	0.00	0	21	0	21	n	0.00	0	21	0	21	n	0.00	0	24	0	24	n	0.00	0	16	0	16	n	0.00	0	26	0	26	n	0.00	0	14	0	14	n	0.00	0	25	0	25	n	ENSMUSG00000022558.17	Mroh1	chr15	protein_coding	maestro heat-like repeat family member 1
novel_NIR_6860	chr15	76331565	76334235	+	76331565	76332953	A3SS&ES	ENSMUST00000160986.8	novel	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	1.00	2	0	2	0	y	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000022558.17	Mroh1	chr15	protein_coding	maestro heat-like repeat family member 1
novel_NIR_6861	chr15	76381164	76381819	+	76380789	76381819	A5SS	ENSMUST00000228868.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022556.12	Hsf1	chr15	protein_coding	heat shock factor 1
novel_NIR_6862	chr15	76387411	76387474	-	76387201	76387474	A3SS	ENSMUST00000162354.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022555.13	Dgat1	chr15	protein_coding	diacylglycerol O-acyltransferase 1
novel_NIR_6863	chr15	76468812	76471958	+	76468834	76471958	A5SS	ENSMUST00000229007.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.08	1	11	1	11	n	0.00	0	10	0	10	n	0.31	4	9	4	9	y	ENSMUSG00000022550.19	Adck5	chr15	protein_coding	aarF domain containing kinase 5
novel_NIR_6864	chr15	76533327	76540560	-	76533330	76540560	A3SS	ENSMUST00000229541.2	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.14	1	6	1	6	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	8	0	8	n	ENSMUSG00000053929.18	Cyhr1	chr15	protein_coding	cysteine and histidine rich 1
novel_NIR_6865	chr15	76544329	76544908	+	76544333	76544908	A5SS	ENSMUST00000230451.2	novel	1.00	11	0	11	0	y	0.75	6	2	6	2	y	1.00	2	0	2	0	y	0.91	10	1	10	1	y	0.64	7	4	7	4	y	1.00	1	0	1	0	n	0.70	7	3	7	3	y	0.88	7	1	7	1	y	0.82	9	2	9	2	y	0.87	13	2	13	2	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	ENSMUSG00000004187.12	Kifc2	chr15	protein_coding	kinesin family member C2
novel_NIR_6866	chr15	76544329	76544908	+	76544643	76544908	5pMXE	ENSMUST00000229112.2	novel	1.00	11	0	11	0	y	1.00	6	0	6	0	y	1.00	2	0	2	0	y	1.00	10	0	10	0	y	1.00	7	0	7	0	y	1.00	1	0	1	0	n	1.00	7	0	7	0	y	1.00	7	0	7	0	y	0.90	9	1	9	1	y	1.00	13	0	13	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	ENSMUSG00000004187.12	Kifc2	chr15	protein_coding	kinesin family member C2
novel_NIR_6867	chr15	76546211	76546311	+	76546211	76546301	A3SS	ENSMUST00000230451.2	novel	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	14	0	14	n	0.05	1	21	1	21	n	0.33	1	2	1	2	n	0.09	2	20	2	20	n	0.00	0	11	0	11	n	0.08	1	11	1	11	n	0.19	3	13	3	13	y	0.14	3	18	3	18	n	0.16	3	16	3	16	y	ENSMUSG00000004187.12	Kifc2	chr15	protein_coding	kinesin family member C2
novel_NIR_6868	chr15	76546872	76547033	+	76546872	76546982	A3SS	ENSMUST00000230451.2	novel	0.43	3	4	3	4	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.50	3	3	3	3	y	0.33	1	2	1	2	n	0.60	3	2	3	2	y	ENSMUSG00000004187.12	Kifc2	chr15	protein_coding	kinesin family member C2
novel_NIR_6869	chr15	76550770	76550900	+	76550770	76550863	A3SS	ENSMUST00000230451.2	novel	0.00	0	32	0	32	n	0.00	0	25	0	25	n	0.00	0	8	0	8	n	0.00	0	32	0	32	n	0.00	0	24	0	24	n	0.00	0	6	0	6	n	0.00	0	31	0	31	n	0.00	0	11	0	11	n	0.00	0	18	0	18	n	0.00	0	37	0	37	n	0.15	4	22	4	22	y	0.00	0	22	0	22	n	ENSMUSG00000004187.12	Kifc2	chr15	protein_coding	kinesin family member C2
novel_NIR_6870	chr15	76555980	76574372	+	76573694	76574372	A5SS&ES	ENSMUST00000135388.3	novel	0.00	0	13	0	13	n	0.06	1	15	1	15	n	0.21	3	11	3	11	y	0.00	0	17	0	17	n	0.05	1	20	1	20	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.05	1	19	1	19	n	0.07	1	13	1	13	n	0.08	1	12	1	12	n	ENSMUSG00000033819.17	Ppp1r16a	chr15	protein_coding	protein phosphatase 1, regulatory subunit 16A
novel_NIR_6871	chr15	76577338	76577639	+	76577338	76577795	A3SS	ENSMUST00000150399.8	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	ENSMUSG00000033819.17	Ppp1r16a	chr15	protein_coding	protein phosphatase 1, regulatory subunit 16A
novel_NIR_6872	chr15	76577552	76577795	+	76577338	76577795	A5SS	ENSMUST00000150399.8	novel	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.50	3	3	3	3	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.67	2	1	2	1	y	1.00	2	0	2	0	y	ENSMUSG00000033819.17	Ppp1r16a	chr15	protein_coding	protein phosphatase 1, regulatory subunit 16A
novel_NIR_6873	chr15	76580040	76580938	+	76580040	76580998	A3SS	ENSMUST00000229679.2	novel	0.00	0	20	0	20	n	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.00	0	19	0	19	n	0.08	1	11	1	11	n	0.33	2	4	2	4	y	0.00	0	18	0	18	n	0.00	0	10	0	10	n	0.10	2	18	2	18	n	0.00	0	12	0	12	n	0.00	0	18	0	18	n	0.11	2	17	2	17	n	ENSMUSG00000022546.6	Gpt	chr15	protein_coding	glutamic pyruvic transaminase, soluble
novel_NIR_6874	chr15	76580040	76580938	+	76580040	76581056	A3SS	ENSMUST00000231028.2	novel	0.00	0	11	0	11	n	0.00	0	12	0	12	n	-	-	-	-	-	-	0.00	0	15	0	15	n	0.06	1	16	1	16	n	1.00	2	0	2	0	y	0.00	0	18	0	18	n	0.00	0	5	0	5	n	0.15	2	11	2	11	y	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.17	2	10	2	10	y	ENSMUSG00000022546.6	Gpt	chr15	protein_coding	glutamic pyruvic transaminase, soluble
novel_NIR_6875	chr15	76580040	76581034	+	76580040	76580998	A3SS	ENSMUST00000229679.2	novel	0.26	7	20	7	20	y	0.17	2	10	2	10	y	0.67	2	1	2	1	y	0.10	2	19	2	19	n	0.00	0	11	0	11	n	0.33	2	4	2	4	y	0.33	9	18	9	18	y	0.00	0	10	0	10	n	0.00	0	18	0	18	n	0.00	0	12	0	12	n	0.22	5	18	5	18	y	0.00	0	17	0	17	n	ENSMUSG00000022546.6	Gpt	chr15	protein_coding	glutamic pyruvic transaminase, soluble
novel_NIR_6876	chr15	76580040	76581034	+	76580040	76581056	A3SS	ENSMUST00000231028.2	novel	0.39	7	11	7	11	y	0.14	2	12	2	12	n	1.00	2	0	2	0	y	0.12	2	15	2	15	n	0.00	0	16	0	16	n	1.00	2	0	2	0	y	0.33	9	18	9	18	y	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.45	5	6	5	6	y	0.00	0	10	0	10	n	ENSMUSG00000022546.6	Gpt	chr15	protein_coding	glutamic pyruvic transaminase, soluble
novel_NIR_6877	chr15	76580040	76581072	+	76580040	76581056	A3SS	ENSMUST00000231028.2	novel	0.15	2	11	2	11	y	0.00	0	12	0	12	n	-	-	-	-	-	-	0.00	0	15	0	15	n	0.00	0	16	0	16	n	-	-	-	-	-	-	0.00	0	18	0	18	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	ENSMUSG00000022546.6	Gpt	chr15	protein_coding	glutamic pyruvic transaminase, soluble
novel_NIR_6878	chr15	76582225	76582503	+	76582225	76582508	A3SS	ENSMUST00000229340.2	novel	0.00	0	4	0	4	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	7	0	7	n	0.33	2	4	2	4	y	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	7	0	7	n	0.25	2	6	2	6	y	0.25	1	3	1	3	n	ENSMUSG00000022546.6	Gpt	chr15	protein_coding	glutamic pyruvic transaminase, soluble
novel_NIR_6879	chr15	76582225	76582514	+	76582225	76582508	A3SS	ENSMUST00000229340.2	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	ENSMUSG00000022546.6	Gpt	chr15	protein_coding	glutamic pyruvic transaminase, soluble
novel_NIR_6880	chr15	76582283	76582508	+	76582225	76582508	A5SS	ENSMUST00000229340.2	novel	0.79	15	4	15	4	y	1.00	14	0	14	0	y	-	-	-	-	-	-	0.00	0	7	0	7	n	0.75	12	4	12	4	y	-	-	-	-	-	-	1.00	9	0	9	0	y	0.60	3	2	3	2	y	1.00	7	0	7	0	y	0.00	0	7	0	7	n	0.40	4	6	4	6	y	0.62	5	3	5	3	y	ENSMUSG00000022546.6	Gpt	chr15	protein_coding	glutamic pyruvic transaminase, soluble
novel_NIR_6881	chr15	76587383	76591721	+	76587383	76587477	3pMXE	ENSMUST00000230468.2	novel	0.00	0	4	0	4	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.40	2	3	2	3	y	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	ENSMUSG00000019080.9	Mfsd3	chr15	protein_coding	major facilitator superfamily domain containing 3
novel_NIR_6882	chr15	76594984	76595556	+	76595036	76595556	A5SS	ENSMUST00000155225.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033728.15	Lrrc14	chr15	protein_coding	leucine rich repeat containing 14
novel_NIR_6883	chr15	76594984	76595556	+	76595127	76595556	A5SS	ENSMUST00000136840.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000033728.15	Lrrc14	chr15	protein_coding	leucine rich repeat containing 14
novel_NIR_6884	chr15	76607183	76607793	-	76607183;76607419	76607371;76607793	ES	ENSMUST00000231059.2	novel	0.00	0	60.5	0	99;22	n	0.00	0	39.5	0	71;8	n	0.00	0	40.5	0	76;5	n	0.02	1	63.0	1	111;15	n	0.04	3	65.5	3	115;16	n	0.00	0	19.5	0	33;6	n	0.01	1	79.0	1	137;21	n	0.16	5	26.0	5	46;6	y	0.00	0	45.0	0	81;9	n	0.00	0	78.5	0	139;18	n	0.02	1	62.5	1	113;12	n	0.00	0	66.0	0	117;15	n	ENSMUSG00000116138.2	C030006K11Rik	chr15	protein_coding	RIKEN cDNA C030006K11 gene
novel_NIR_6885	chr15	76611676	76614284	-	76611676	76614564	A5SS	ENSMUST00000036176.16	novel	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.12	1	7	1	7	n	0.00	0	13	0	13	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.00	0	7	0	7	n	ENSMUSG00000033697.17	Arhgap39	chr15	protein_coding	Rho GTPase activating protein 39
novel_NIR_6886	chr15	76611676	76614284	-	76611676	76619077	A5SS	ENSMUST00000239134.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000033697.17	Arhgap39	chr15	protein_coding	Rho GTPase activating protein 39
novel_NIR_6887	chr15	76614656	76616013	-	76614656	76619077	A5SS	ENSMUST00000036176.16	novel	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.36	4	7	4	7	y	ENSMUSG00000033697.17	Arhgap39	chr15	protein_coding	Rho GTPase activating protein 39
novel_NIR_6888	chr15	76976054	76978651	-	76970355	76978651	A3SS	ENSMUST00000171751.10	novel	0.07	1	13	1	13	n	0.00	0	8	0	8	n	0.00	0	18	0	18	n	0.00	0	9	0	9	n	0.16	3	16	3	16	y	0.00	0	7	0	7	n	0.15	2	11	2	11	y	0.20	3	12	3	12	y	0.06	1	16	1	16	n	0.12	3	21	3	21	n	0.00	0	9	0	9	n	0.19	4	17	4	17	y	ENSMUSG00000033565.19	Rbfox2	chr15	protein_coding	RNA binding protein, fox-1 homolog (C. elegans) 2
novel_NIR_6889	chr15	76976054	76978651	-	76976054	76982140	A5SS	ENSMUST00000227314.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	0.75	3	1	3	1	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000033565.19	Rbfox2	chr15	protein_coding	RNA binding protein, fox-1 homolog (C. elegans) 2
novel_NIR_6890	chr15	76978690	76981031	-	76978690	76982140	A5SS	ENSMUST00000171751.10	novel	0.00	0	7	0	7	n	0.17	1	5	1	5	n	0.00	0	18	0	18	n	0.11	1	8	1	8	n	0.05	1	19	1	19	n	0.00	0	11	0	11	n	0.12	2	14	2	14	n	0.00	0	16	0	16	n	0.20	2	8	2	8	y	0.54	7	6	7	6	y	0.12	1	7	1	7	n	0.00	0	22	0	22	n	ENSMUSG00000033565.19	Rbfox2	chr15	protein_coding	RNA binding protein, fox-1 homolog (C. elegans) 2
novel_NIR_6891	chr15	77115637	77138397	-	77115637	77129690	5pMXE	ENSMUST00000228361.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033565.19	Rbfox2	chr15	protein_coding	RNA binding protein, fox-1 homolog (C. elegans) 2
novel_NIR_6892	chr15	77115637	77138397	-	77115637	77190564	A5SS	ENSMUST00000171751.10	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.25	2	6	2	6	y	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	ENSMUSG00000033565.19	Rbfox2	chr15	protein_coding	RNA binding protein, fox-1 homolog (C. elegans) 2
novel_NIR_6893	chr15	77183902	77190564	-	77017141	77190564	A3SS	ENSMUST00000228582.2	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.33	3	6	3	6	y	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.20	1	4	1	4	n	ENSMUSG00000033565.19	Rbfox2	chr15	protein_coding	RNA binding protein, fox-1 homolog (C. elegans) 2
novel_NIR_6894	chr15	77183902	77190564	-	77115637	77190564	A3SS	ENSMUST00000171751.10	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.30	3	7	3	7	y	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.14	1	6	1	6	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.12	1	7	1	7	n	ENSMUSG00000033565.19	Rbfox2	chr15	protein_coding	RNA binding protein, fox-1 homolog (C. elegans) 2
novel_NIR_6895	chr15	77254666	77261045	-	77254666	77254954	5pMXE	ENSMUST00000229296.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	10	0	10	0	y	ENSMUSG00000116284.2	Gm3787	chr15	transcribed_processed_pseudogene	predicted gene 3787
novel_NIR_6896	chr15	77289906	77292094	-	77289906	77290587	5pMXE	ENSMUST00000231161.2	novel	0.10	1	9	1	9	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.33	3	6	3	6	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.29	2	5	2	5	y	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.00	0	10	0	10	n	ENSMUSG00000057346.13	Apol9a	chr15	protein_coding	apolipoprotein L 9a
novel_NIR_6897	chr15	77289906	77293158	-	77289906	77290587	5pMXE	ENSMUST00000231161.2	novel	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.17	2	10	2	10	y	ENSMUSG00000057346.13	Apol9a	chr15	protein_coding	apolipoprotein L 9a
novel_NIR_6898	chr15	77393099	77395126	+	77392553	77395126	A5SS	ENSMUST00000172191.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000091650.3	Apol11a	chr15	protein_coding	apolipoprotein L 11a
novel_NIR_6899	chr15	77442727	77443318	-	77442727;77443249	77443094;77443318	ES	ENSMUST00000190233.2	novel	0.80	2	0.5	2	0;1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	ENSMUSG00000101113.2	1700025B11Rik	chr15	protein_coding	RIKEN cDNA 1700025B11 gene
novel_NIR_6900	chr15	77443360	77446151	-	77443360	77446028	5pMXE	ENSMUST00000190233.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000101113.2	1700025B11Rik	chr15	protein_coding	RIKEN cDNA 1700025B11 gene
novel_NIR_6901	chr15	77476349	77480882	-	77476349	77480195	5pMXE	ENSMUST00000089465.6	novel	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	3	0	3	0	y	ENSMUSG00000050014.9	Apol10b	chr15	protein_coding	apolipoprotein L 10B
novel_NIR_6902	chr15	77483370	77486139	+	77483492	77486139	5pMXE	ENSMUST00000230670.2	novel	1.00	4	0	4	0	y	1.00	2	0	2	0	y	0.73	8	3	8	3	y	1.00	1	0	1	0	n	1.00	7	0	7	0	y	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	6	0	6	0	y	0.20	1	4	1	4	n	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000116079.2	Gm36245	chr15	protein_coding	predicted gene, 36245
novel_NIR_6903	chr15	77486181	77486286	+	77486181	77486250	A3SS	ENSMUST00000230670.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.43	3	4	3	4	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000116079.2	Gm36245	chr15	protein_coding	predicted gene, 36245
novel_NIR_6904	chr15	77486181	77486769	+	77486181;77486405	77486250;77486769	ES	ENSMUST00000230670.2	novel	1.00	1	0.0	1	0;0	n	0.00	0	0.5	0	1;0	n	0.36	2	3.5	2	5;2	y	0.00	0	0.5	0	0;1	n	0.00	0	2.0	0	3;1	n	-	-	-	-	-	-	0.00	0	1.5	0	1;2	n	0.50	1	1.0	1	1;1	n	0.00	0	2.0	0	4;0	n	0.91	5	0.5	5	1;0	y	-	-	-	-	-	-	0.33	1	2.0	1	3;1	n	ENSMUSG00000116079.2	Gm36245	chr15	protein_coding	predicted gene, 36245
novel_NIR_6905	chr15	77541034	77542101	-	77541034	77543962	A5SS	ENSMUST00000229391.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000116383.2	Apol10c-ps	chr15	transcribed_unprocessed_pseudogene	apolipoprotein L 10C, pseudogene
novel_NIR_6906	chr15	77613348	77617012	+	77613348	77618665	A3SS	ENSMUST00000230979.2	novel	0.10	7	63	7	63	n	0.05	2	39	2	39	n	0.09	1	10	1	10	n	0.09	9	92	9	92	n	0.33	12	24	12	24	y	0.00	0	2	0	2	n	0.17	5	24	5	24	y	0.50	1	1	1	1	n	0.16	12	61	12	61	y	0.17	16	76	16	76	y	0.20	22	86	22	86	y	0.21	23	85	23	85	y	ENSMUSG00000068246.7	Apol9b	chr15	protein_coding	apolipoprotein L 9b
novel_NIR_6907	chr15	77613348	77617826	+	77613348	77618665	A3SS	ENSMUST00000230979.2	novel	0.09	6	63	6	63	n	0.13	6	39	6	39	n	0.23	3	10	3	10	y	0.06	6	92	6	92	n	0.08	2	24	2	24	n	0.00	0	2	0	2	n	0.04	1	24	1	24	n	0.00	0	1	0	1	n	0.13	9	61	9	61	n	0.13	11	76	11	76	n	0.00	0	86	0	86	n	0.04	4	85	4	85	n	ENSMUSG00000068246.7	Apol9b	chr15	protein_coding	apolipoprotein L 9b
novel_NIR_6908	chr15	77613348	77617826	+	77613446	77617826	A5SS	ENSMUST00000230742.2	novel	0.75	6	2	6	2	y	0.75	6	2	6	2	y	1.00	3	0	3	0	y	0.75	6	2	6	2	y	1.00	2	0	2	0	y	-	-	-	-	-	-	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.60	9	6	9	6	y	1.00	11	0	11	0	y	-	-	-	-	-	-	0.40	4	6	4	6	y	ENSMUSG00000068246.7	Apol9b	chr15	protein_coding	apolipoprotein L 9b
novel_NIR_6909	chr15	77613446	77617012	+	77613446	77617826	A3SS	ENSMUST00000230742.2	novel	0.75	6	2	6	2	y	0.50	2	2	2	2	y	-	-	-	-	-	-	0.71	5	2	5	2	y	1.00	3	0	3	0	y	-	-	-	-	-	-	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.60	9	6	9	6	y	1.00	12	0	12	0	y	-	-	-	-	-	-	0.45	5	6	5	6	y	ENSMUSG00000068246.7	Apol9b	chr15	protein_coding	apolipoprotein L 9b
novel_NIR_6910	chr15	77613446	77618667	+	77613446	77617826	A3SS&ES	ENSMUST00000230742.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	1.00	6	0	6	0	y	-	-	-	-	-	-	0.00	0	6	0	6	n	ENSMUSG00000068246.7	Apol9b	chr15	protein_coding	apolipoprotein L 9b
novel_NIR_6911	chr15	77799436	77799912	-	77799436	77799905	A5SS	ENSMUST00000173631.8	novel	0.00	0	28	0	28	n	0.08	3	33	3	33	n	0.20	4	16	4	16	y	0.04	1	22	1	22	n	0.03	1	36	1	36	n	0.08	1	11	1	11	n	0.03	1	28	1	28	n	0.00	0	18	0	18	n	0.06	3	48	3	48	n	0.09	5	51	5	51	n	0.00	0	38	0	38	n	0.04	2	50	2	50	n	ENSMUSG00000005354.17	Txn2	chr15	protein_coding	thioredoxin 2
novel_NIR_6912	chr15	77811447	77811892	-	77810919	77811892	A3SS	ENSMUST00000100486.6	novel	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.07	1	14	1	14	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	19	0	19	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.27	3	8	3	8	y	0.00	0	5	0	5	n	ENSMUSG00000005354.17	Txn2	chr15	protein_coding	thioredoxin 2
novel_NIR_6913	chr15	78145237	78146286	+	78145237	78146396	A3SS	ENSMUST00000096357.12	novel	0.00	0	9	0	9	n	0.07	1	13	1	13	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.20	4	16	4	16	y	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	ENSMUSG00000071715.13	Ncf4	chr15	protein_coding	neutrophil cytosolic factor 4
novel_NIR_6914	chr15	78229129	78229599	+	78228824	78229599	A5SS	ENSMUST00000230264.3	novel	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.64	7	4	7	4	y	0.09	1	10	1	10	n	0.10	1	9	1	9	n	0.22	2	7	2	7	y	0.50	4	4	4	4	y	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.14	1	6	1	6	n	ENSMUSG00000071713.7	Csf2rb	chr15	protein_coding	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)
novel_NIR_6915	chr15	78229145	78229599	+	78228824	78229599	A5SS	ENSMUST00000230264.3	novel	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.00	0	6	0	6	n	ENSMUSG00000071713.7	Csf2rb	chr15	protein_coding	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)
novel_NIR_6916	chr15	78291230	78294243	+	78290944	78294243	A5SS	ENSMUST00000229791.2	novel	0.00	0	17	0	17	n	0.10	2	18	2	18	n	0.10	1	9	1	9	n	0.20	4	16	4	16	y	0.00	0	37	0	37	n	-	-	-	-	-	-	0.23	7	23	7	23	y	0.00	0	13	0	13	n	0.05	1	18	1	18	n	0.05	1	19	1	19	n	0.28	5	13	5	13	y	0.03	1	31	1	31	n	ENSMUSG00000071711.13	Mpst	chr15	protein_coding	mercaptopyruvate sulfurtransferase
novel_NIR_6917	chr15	78291230	78294243	+	78291063	78294243	A5SS	ENSMUST00000231159.2	novel	0.00	0	9	0	9	n	0.25	2	6	2	6	y	0.10	1	9	1	9	n	0.20	4	16	4	16	y	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.26	7	20	7	20	y	0.00	0	4	0	4	n	0.04	1	23	1	23	n	0.03	1	35	1	35	n	0.25	5	15	5	15	y	0.09	1	10	1	10	n	ENSMUSG00000071711.13	Mpst	chr15	protein_coding	mercaptopyruvate sulfurtransferase
novel_NIR_6918	chr15	78291230	78294243	+	78291470	78294243	A5SS	ENSMUST00000043865.8	novel	0.00	0	9	0	9	n	0.20	2	8	2	8	y	0.33	1	2	1	2	n	0.36	4	7	4	7	y	0.00	0	14	0	14	n	0.00	0	3	0	3	n	0.25	7	21	7	21	y	0.00	0	8	0	8	n	0.09	1	10	1	10	n	0.09	1	10	1	10	n	0.33	5	10	5	10	y	0.07	1	14	1	14	n	ENSMUSG00000071711.13	Mpst	chr15	protein_coding	mercaptopyruvate sulfurtransferase
novel_NIR_6919	chr15	78294144	78294243	+	78290944	78294243	A5SS	ENSMUST00000229791.2	novel	0.00	0	17	0	17	n	0.00	0	18	0	18	n	0.25	3	9	3	9	y	0.30	7	16	7	16	y	0.14	6	37	6	37	n	-	-	-	-	-	-	0.00	0	23	0	23	n	0.00	0	13	0	13	n	0.36	10	18	10	18	y	0.32	9	19	9	19	y	0.35	7	13	7	13	y	0.16	6	31	6	31	y	ENSMUSG00000071711.13	Mpst	chr15	protein_coding	mercaptopyruvate sulfurtransferase
novel_NIR_6920	chr15	78294144	78294243	+	78291063	78294243	A5SS	ENSMUST00000231159.2	novel	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.25	3	9	3	9	y	0.30	7	16	7	16	y	0.32	6	13	6	13	y	0.00	0	10	0	10	n	0.00	0	20	0	20	n	0.00	0	4	0	4	n	0.30	10	23	10	23	y	0.20	9	35	9	35	y	0.32	7	15	7	15	y	0.38	6	10	6	10	y	ENSMUSG00000071711.13	Mpst	chr15	protein_coding	mercaptopyruvate sulfurtransferase
novel_NIR_6921	chr15	78294144	78294243	+	78291470	78294243	A5SS	ENSMUST00000043865.8	novel	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.60	3	2	3	2	y	0.50	7	7	7	7	y	0.30	6	14	6	14	y	0.00	0	3	0	3	n	0.00	0	21	0	21	n	0.00	0	8	0	8	n	0.50	10	10	10	10	y	0.47	9	10	9	10	y	0.41	7	10	7	10	y	0.30	6	14	6	14	y	ENSMUSG00000071711.13	Mpst	chr15	protein_coding	mercaptopyruvate sulfurtransferase
novel_NIR_6922	chr15	78296606	78308172	-	78304816	78308172	3pMXE	ENSMUST00000229780.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000115854.2	Gm36644	chr15	lncRNA	predicted gene, 36644
novel_NIR_6923	chr15	78326753	78327989	-	78326753	78328296	A5SS	ENSMUST00000229516.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.17	1	5	1	5	n	0.67	2	1	2	1	y	1.00	2	0	2	0	y	0.40	2	3	2	3	n	0.50	2	2	2	2	y	0.40	2	3	2	3	y	ENSMUSG00000016942.7	Tmprss6	chr15	protein_coding	transmembrane serine protease 6
novel_NIR_6924	chr15	78345578	78352626	-	78337104	78352626	A3SS	ENSMUST00000229124.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000016942.7	Tmprss6	chr15	protein_coding	transmembrane serine protease 6
novel_NIR_6925	chr15	78351944	78352626	-	78337104	78352626	A3SS	ENSMUST00000229124.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000016942.7	Tmprss6	chr15	protein_coding	transmembrane serine protease 6
novel_NIR_6926	chr15	78413603	78413718	-	78411668	78413718	A3SS	ENSMUST00000023075.9	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.22	2	7	2	7	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000022440.10	C1qtnf6	chr15	protein_coding	C1q and tumor necrosis factor related protein 6
novel_NIR_6927	chr15	78413603	78413718	-	78413599	78413718	A3SS	ENSMUST00000137827.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022440.10	C1qtnf6	chr15	protein_coding	C1q and tumor necrosis factor related protein 6
novel_NIR_6928	chr15	78661774	78662159	-	78661777	78662159	A3SS	ENSMUST00000164826.8	novel	0.00	0	16	0	16	n	0.33	5	10	5	10	y	0.09	2	20	2	20	n	0.00	0	17	0	17	n	0.14	3	18	3	18	n	0.25	3	9	3	9	y	0.18	3	14	3	14	y	0.15	2	11	2	11	y	0.00	0	11	0	11	n	0.03	1	34	1	34	n	0.07	1	13	1	13	n	0.19	4	17	4	17	y	ENSMUSG00000033170.15	Card10	chr15	protein_coding	caspase recruitment domain family, member 10
novel_NIR_6929	chr15	78736552	78739856	-	78736552	78739672	5pMXE	ENSMUST00000044584.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000043501.6	Lgals2	chr15	protein_coding	lectin, galactose-binding, soluble 2
novel_NIR_6930	chr15	78773310	78773881	+	78773310	78773920	A3SS	ENSMUST00000230192.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000033128.10	Gga1	chr15	protein_coding	golgi associated, gamma adaptin ear containing, ARF binding protein 1
novel_NIR_6931	chr15	78871547	78872092	+	78858492	78872092	A5SS	ENSMUST00000229270.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033088.20	Triobp	chr15	protein_coding	TRIO and F-actin binding protein
novel_NIR_6932	chr15	78871547	78872092	+	78860744	78872092	A5SS	ENSMUST00000109689.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033088.20	Triobp	chr15	protein_coding	TRIO and F-actin binding protein
novel_NIR_6933	chr15	78871547	78872092	+	78862951	78872092	A5SS	ENSMUST00000109690.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033088.20	Triobp	chr15	protein_coding	TRIO and F-actin binding protein
novel_NIR_6934	chr15	78871547	78872092	+	78867982	78872092	A5SS	ENSMUST00000144151.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000033088.20	Triobp	chr15	protein_coding	TRIO and F-actin binding protein
novel_NIR_6935	chr15	78878352	78879070	+	78878352	78878498	3pMXE	ENSMUST00000130663.10	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000033088.20	Triobp	chr15	protein_coding	TRIO and F-actin binding protein
novel_NIR_6936	chr15	78901332	78907948	-	78901332	78907681	5pMXE	ENSMUST00000231015.2	novel	0.83	5	1	5	1	y	0.86	6	1	6	1	y	1.00	1	0	1	0	n	0.50	2	2	2	2	y	0.86	6	1	6	1	y	1.00	2	0	2	0	y	0.62	8	5	8	5	y	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	9	0	9	0	y	0.86	6	1	6	1	y	0.50	1	1	1	1	n	ENSMUSG00000115867.2	Gm17753	chr15	lncRNA	predicted gene, 17753
novel_NIR_6937	chr15	78901332	78907948	-	78901332	78909696	A5SS	ENSMUST00000229708.2	novel	0.12	5	38	5	38	n	0.21	6	23	6	23	y	0.09	1	10	1	10	n	0.06	2	32	2	32	n	0.10	6	56	6	56	n	0.14	2	12	2	12	n	0.14	8	49	8	49	n	0.16	5	26	5	26	y	0.06	2	32	2	32	n	0.21	9	33	9	33	y	0.10	6	55	6	55	n	0.02	1	51	1	51	n	ENSMUSG00000115867.2	Gm17753	chr15	lncRNA	predicted gene, 17753
novel_NIR_6938	chr15	78930146	78935742	-	78930146	78935113	5pMXE	ENSMUST00000230803.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000116287.2	Gm3924	chr15	lncRNA	predicted gene 3924
novel_NIR_6939	chr15	78959785	78959971	+	78959560	78959971	A5SS	ENSMUST00000229310.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033047.6	Eif3l	chr15	protein_coding	eukaryotic translation initiation factor 3, subunit L
novel_NIR_6940	chr15	78993629;78996407	78996340;78998855	+	78993629	78998855	cassetteExon	ENSMUST00000040320.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0.0	14	0;0	14	n	0.00	0.0	5	0;0	5	n	0.04	0.5	12	0;1	12	n	0.07	0.5	7	1;0	7	n	0.38	2.5	4	2;3	4	y	0.00	0.0	6	0;0	6	n	0.29	2.5	6	4;1	6	n	0.18	1.5	7	2;1	7	n	0.00	0.0	4	0;0	4	n	0.12	1.0	7	1;1	7	n	ENSMUSG00000033039.11	Micall1	chr15	protein_coding	microtubule associated monooxygenase, calponin and LIM domain containing -like 1
novel_NIR_6941	chr15	79008758	79009399	+	79008758	79009450	A3SS	ENSMUST00000229113.2	novel	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.29	2	5	2	5	y	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	ENSMUSG00000033039.11	Micall1	chr15	protein_coding	microtubule associated monooxygenase, calponin and LIM domain containing -like 1
novel_NIR_6942	chr15	79094581	79100310	+	79050379	79100310	A5SS	ENSMUST00000144651.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000075555.13	Gm10863	chr15	lncRNA	predicted gene 10863
novel_NIR_6943	chr15	79094581	79100310	+	79094245	79100310	A5SS	ENSMUST00000229207.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000075555.13	Gm10863	chr15	lncRNA	predicted gene 10863
novel_NIR_6944	chr15	79094581	79100310	+	79094449	79100310	A5SS	ENSMUST00000131710.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000075555.13	Gm10863	chr15	lncRNA	predicted gene 10863
novel_NIR_6945	chr15	79132496	79132926	+	79132496	79139682	A3SS	ENSMUST00000053926.12	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	6	0	6	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	2	0	2	0	y	ENSMUSG00000116121.2	Gm49486	chr15	protein_coding	predicted gene, 49486
novel_NIR_6946	chr15	79188539	79189903	-	79188669	79189903	A3SS	ENSMUST00000174021.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.50	2	2	2	2	y	0.00	0	6	0	6	n	ENSMUSG00000042632.18	Pla2g6	chr15	protein_coding	phospholipase A2, group VI
novel_NIR_6947	chr15	79202210	79203255	-	79202210	79207475	A5SS	ENSMUST00000173109.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.29	2	5	2	5	y	0.00	0	6	0	6	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	1	0	1	n	ENSMUSG00000042632.18	Pla2g6	chr15	protein_coding	phospholipase A2, group VI
novel_NIR_6948	chr15	79202210	79203255	-	79202210	79208452	A5SS	ENSMUST00000172936.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000042632.18	Pla2g6	chr15	protein_coding	phospholipase A2, group VI
novel_NIR_6949	chr15	79202210	79203255	-	79202210	79212289	A5SS	ENSMUST00000047816.15	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000042632.18	Pla2g6	chr15	protein_coding	phospholipase A2, group VI
novel_NIR_6950	chr15	79202210	79203255	-	79202210	79212410	A5SS	ENSMUST00000173632.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000042632.18	Pla2g6	chr15	protein_coding	phospholipase A2, group VI
novel_NIR_6951	chr15	79254188	79256547	-	79254188	79287385	A5SS	ENSMUST00000231076.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000009035.16	Tmem184b	chr15	protein_coding	transmembrane protein 184b
novel_NIR_6952	chr15	79254188	79258334	-	79254188	79287385	A5SS	ENSMUST00000231076.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000009035.16	Tmem184b	chr15	protein_coding	transmembrane protein 184b
novel_NIR_6953	chr15	79323059	79324283	-	79323059	79325421	A5SS	ENSMUST00000122044.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022433.22	Csnk1e	chr15	protein_coding	casein kinase 1, epsilon
novel_NIR_6954	chr15	79323059	79324283	-	79323059	79326128	A5SS	ENSMUST00000120859.9	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.50	2	2	2	2	y	0.00	0	8	0	8	n	0.00	0	1	0	1	n	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000022433.22	Csnk1e	chr15	protein_coding	casein kinase 1, epsilon
novel_NIR_6955	chr15	79323059	79324283	-	79323059	79326293	A5SS	ENSMUST00000230942.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000022433.22	Csnk1e	chr15	protein_coding	casein kinase 1, epsilon
novel_NIR_6956	chr15	79323059	79324283	-	79323059	79327748	A5SS	ENSMUST00000156043.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022433.22	Csnk1e	chr15	protein_coding	casein kinase 1, epsilon
novel_NIR_6957	chr15	79323059	79324283	-	79323059	79339691	A5SS	ENSMUST00000230599.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022433.22	Csnk1e	chr15	protein_coding	casein kinase 1, epsilon
novel_NIR_6958	chr15	79414718	79420158	-	79417411	79420158	3pMXE	ENSMUST00000231053.2	novel	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.07	1	14	1	14	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.16	3	16	3	16	y	0.33	3	6	3	6	y	0.00	0	19	0	19	n	ENSMUSG00000055065.8	Ddx17	chr15	protein_coding	DEAD box helicase 17
novel_NIR_6959	chr15	79416069	79420158	-	79417411	79420158	A3SS	ENSMUST00000231053.2	novel	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.25	2	6	2	6	y	0.00	0	19	0	19	n	ENSMUSG00000055065.8	Ddx17	chr15	protein_coding	DEAD box helicase 17
novel_NIR_6960	chr15	79416115	79417176	-	79416115	79420158	A5SS	ENSMUST00000054014.9	novel	0.00	0	74	0	74	n	0.00	0	39	0	39	n	0.00	0	110	0	110	n	0.11	10	80	10	80	n	0.04	6	150	6	150	n	0.11	4	34	4	34	n	0.05	6	125	6	125	n	0.15	7	39	7	39	y	0.01	1	68	1	68	n	0.01	1	80	1	80	n	0.03	2	70	2	70	n	0.10	11	101	11	101	n	ENSMUSG00000055065.8	Ddx17	chr15	protein_coding	DEAD box helicase 17
novel_NIR_6961	chr15	79418691	79420158	-	79417411	79420158	A3SS	ENSMUST00000231053.2	novel	0.00	0	7	0	7	n	0.22	2	7	2	7	y	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.08	1	11	1	11	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.00	0	19	0	19	n	ENSMUSG00000055065.8	Ddx17	chr15	protein_coding	DEAD box helicase 17
novel_NIR_6962	chr15	79555209	79555378	+	79555209	79556098	A3SS	ENSMUST00000229502.2	novel	0.00	0	1	0	1	n	0.38	3	5	3	5	y	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	ENSMUSG00000022427.5	Tomm22	chr15	protein_coding	translocase of outer mitochondrial membrane 22
novel_NIR_6963	chr15	80033041	80033917	+	80033041	80033983	A3SS	ENSMUST00000023050.9	novel	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.14	1	6	1	6	n	0.17	1	5	1	5	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	2	0	2	n	ENSMUSG00000022414.9	Tab1	chr15	protein_coding	TGF-beta activated kinase 1/MAP3K7 binding protein 1
novel_NIR_6964	chr15	80118382	80118635	+	80118382	80118883	A3SS	ENSMUST00000229138.2	novel	0.33	1	2	1	2	n	0.25	1	3	1	3	n	0.33	2	4	2	4	y	0.40	2	3	2	3	y	0.20	1	4	1	4	n	0.57	4	3	4	3	y	0.38	3	5	3	5	y	0.27	3	8	3	8	y	0.25	2	6	2	6	y	0.00	0	3	0	3	n	0.33	2	4	2	4	y	0.00	0	5	0	5	n	ENSMUSG00000022412.15	Mief1	chr15	protein_coding	mitochondrial elongation factor 1
novel_NIR_6965	chr15	80118382	80118635	+	80118382	80120006	A3SS	ENSMUST00000023048.12	novel	0.17	1	5	1	5	n	0.12	1	7	1	7	n	0.18	2	9	2	9	y	0.14	2	12	2	12	n	0.05	1	18	1	18	n	0.44	4	5	4	5	y	0.15	3	17	3	17	y	0.25	3	9	3	9	y	0.15	2	11	2	11	y	0.00	0	9	0	9	n	0.22	2	7	2	7	y	0.00	0	9	0	9	n	ENSMUSG00000022412.15	Mief1	chr15	protein_coding	mitochondrial elongation factor 1
novel_NIR_6966	chr15	80128918	80130938	+	80120354	80130938	A5SS	ENSMUST00000023048.12	novel	0.00	0	17	0	17	n	0.20	2	8	2	8	y	0.00	0	30	0	30	n	0.00	0	28	0	28	n	0.00	0	35	0	35	n	0.00	0	8	0	8	n	0.00	0	17	0	17	n	0.00	0	32	0	32	n	0.00	0	20	0	20	n	0.00	0	25	0	25	n	0.00	0	20	0	20	n	0.00	0	28	0	28	n	ENSMUSG00000022412.15	Mief1	chr15	protein_coding	mitochondrial elongation factor 1
novel_NIR_6967	chr15	80128918	80130938	+	80123693	80130938	A5SS	ENSMUST00000166030.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022412.15	Mief1	chr15	protein_coding	mitochondrial elongation factor 1
novel_NIR_6968	chr15	80130200	80130938	+	80123693	80130938	A5SS	ENSMUST00000166030.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000022412.15	Mief1	chr15	protein_coding	mitochondrial elongation factor 1
novel_NIR_6969	chr15	80595689	80643741	+	80595689;80631674	80631607;80643741	ES	ENSMUST00000067689.9	novel	0.00	0	1.5	0	1;2	n	0.00	0	3.0	0	2;4	n	0.00	0	3.5	0	4;3	n	0.00	0	0.5	0	1;0	n	0.50	3	3.0	3	2;4	y	0.00	0	3.0	0	3;3	n	0.00	0	3.0	0	3;3	n	0.17	1	5.0	1	7;3	n	0.00	0	0.5	0	1;0	n	0.50	1	1.0	1	1;1	n	0.00	0	2.0	0	1;3	n	0.00	0	4.5	0	3;6	n	ENSMUSG00000047888.11	Tnrc6b	chr15	protein_coding	trinucleotide repeat containing 6b
novel_NIR_6970	chr15	80802298	80807659	+	80802298	80802712	3pMXE	ENSMUST00000228071.2	novel	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.00	0	15	0	15	n	0.25	3	9	3	9	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.00	0	4	0	4	n	0.08	2	22	2	22	n	ENSMUSG00000047888.11	Tnrc6b	chr15	protein_coding	trinucleotide repeat containing 6b
novel_NIR_6971	chr15	80802298	80807659	+	80802298;80802807	80802712;80807659	ES	ENSMUST00000067689.9	novel	0.22	1	3.5	1	2;5	n	0.00	0	6.0	0	5;7	n	0.00	0	13.5	0	15;12	n	0.23	3	10.0	3	9;11	y	0.00	0	6.5	0	4;9	n	0.00	0	6.5	0	6;7	n	0.00	0	19.5	0	12;27	n	0.00	0	6.5	0	10;3	n	0.00	0	9.0	0	10;8	n	0.00	0	13.5	0	16;11	n	0.00	0	4.0	0	4;4	n	0.11	2	15.5	2	22;9	n	ENSMUSG00000047888.11	Tnrc6b	chr15	protein_coding	trinucleotide repeat containing 6b
novel_NIR_6972	chr15	80888071	80888260	+	80888071	80888264	A3SS	ENSMUST00000137004.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000042303.20	Sgsm3	chr15	protein_coding	small G protein signaling modulator 3
novel_NIR_6973	chr15	80888071	80888260	+	80888071	80890608	A3SS	ENSMUST00000139517.9	novel	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	22	0	22	n	0.40	2	3	2	3	y	0.00	0	19	0	19	n	0.07	1	13	1	13	n	0.00	0	13	0	13	n	0.00	0	17	0	17	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	ENSMUSG00000042303.20	Sgsm3	chr15	protein_coding	small G protein signaling modulator 3
novel_NIR_6974	chr15	80895723	80895818	+	80895723	80895860	A3SS	ENSMUST00000124845.9	novel	-	-	-	-	-	-	1.00	4	0	4	0	y	0.38	3	5	3	5	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000042303.20	Sgsm3	chr15	protein_coding	small G protein signaling modulator 3
novel_NIR_6975	chr15	8108756	8111946	-	8108848	8111946	A3SS	ENSMUST00000045766.8	novel	0.00	0	3	0	3	n	0.30	3	7	3	7	y	0.08	1	11	1	11	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.14	1	6	1	6	n	0.00	0	12	0	12	n	0.25	2	6	2	6	y	0.12	1	7	1	7	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	ENSMUSG00000039828.8	Wdr70	chr15	protein_coding	WD repeat domain 70
novel_NIR_6976	chr15	81207893	81211260	-	81207893	81209094	5pMXE	ENSMUST00000229564.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000022404.9	Slc25a17	chr15	protein_coding	solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17
novel_NIR_6977	chr15	81228357	81244878	-	81229167	81244878	A3SS&ES	ENSMUST00000230309.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000022404.9	Slc25a17	chr15	protein_coding	solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17
novel_NIR_6978	chr15	81276523	81280306	-	81276523	81283508	A5SS	ENSMUST00000165582.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000022403.16	St13	chr15	protein_coding	suppression of tumorigenicity 13
novel_NIR_6979	chr15	81276523	81280306	-	81276523	81283990	A5SS	ENSMUST00000169204.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000022403.16	St13	chr15	protein_coding	suppression of tumorigenicity 13
novel_NIR_6980	chr15	81298749	81300073	+	81298749	81300048	A3SS	ENSMUST00000164144.3	novel	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.75	3	1	3	1	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	ENSMUSG00000022401.13	Xpnpep3	chr15	protein_coding	X-prolyl aminopeptidase 3, mitochondrial
novel_NIR_6981	chr15	81298749	81300073	+	81298749	81300104	A3SS	ENSMUST00000165258.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022401.13	Xpnpep3	chr15	protein_coding	X-prolyl aminopeptidase 3, mitochondrial
novel_NIR_6982	chr15	81298749	81300073	+	81298749	81311477	A3SS	ENSMUST00000163754.9	novel	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.15	3	17	3	17	y	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	19	0	19	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	ENSMUSG00000022401.13	Xpnpep3	chr15	protein_coding	X-prolyl aminopeptidase 3, mitochondrial
novel_NIR_6983	chr15	81300155	81305554	-	81300155	81303205	5pMXE	ENSMUST00000133273.3	novel	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.20	1	4	1	4	n	0.00	0	2	0	2	n	ENSMUSG00000091492.2	Gm17025	chr15	lncRNA	predicted gene 17025
novel_NIR_6984	chr15	81311884	81314962	+	81311884	81314891	A3SS	ENSMUST00000163754.9	novel	0.08	1	12	1	12	n	0.00	0	5	0	5	n	0.00	0	16	0	16	n	0.00	0	19	0	19	n	0.00	0	23	0	23	n	0.18	2	9	2	9	y	0.00	0	13	0	13	n	0.00	0	23	0	23	n	0.00	0	17	0	17	n	0.00	0	24	0	24	n	0.00	0	12	0	12	n	0.00	0	29	0	29	n	ENSMUSG00000022401.13	Xpnpep3	chr15	protein_coding	X-prolyl aminopeptidase 3, mitochondrial
novel_NIR_6985	chr15	81311884	81314962	+	81311884	81320915	A3SS	ENSMUST00000167799.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022401.13	Xpnpep3	chr15	protein_coding	X-prolyl aminopeptidase 3, mitochondrial
novel_NIR_6986	chr15	81335222	81337050	+	81335222	81337066	A3SS	ENSMUST00000163754.9	novel	0.22	4	14	4	14	y	0.00	0	12	0	12	n	0.00	0	17	0	17	n	0.00	0	24	0	24	n	0.00	0	29	0	29	n	0.00	0	6	0	6	n	0.00	0	18	0	18	n	0.00	0	15	0	15	n	0.00	0	18	0	18	n	0.00	0	21	0	21	n	0.00	0	16	0	16	n	0.00	0	21	0	21	n	ENSMUSG00000022401.13	Xpnpep3	chr15	protein_coding	X-prolyl aminopeptidase 3, mitochondrial
novel_NIR_6987	chr15	81335222	81340782	+	81335222	81337066	A3SS	ENSMUST00000163754.9	novel	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	17	0	17	n	0.00	0	24	0	24	n	0.00	0	29	0	29	n	0.00	0	6	0	6	n	0.00	0	18	0	18	n	0.00	0	15	0	15	n	0.00	0	18	0	18	n	0.00	0	21	0	21	n	0.16	3	16	3	16	y	0.00	0	21	0	21	n	ENSMUSG00000022401.13	Xpnpep3	chr15	protein_coding	X-prolyl aminopeptidase 3, mitochondrial
novel_NIR_6988	chr15	81514320	81515836	+	81514320	81515815	A3SS	ENSMUST00000068387.11	novel	0.25	4	12	4	12	y	0.00	0	6	0	6	n	0.04	1	25	1	25	n	0.00	0	12	0	12	n	0.23	8	27	8	27	y	0.04	1	24	1	24	n	0.14	3	19	3	19	n	0.05	1	21	1	21	n	0.21	3	11	3	11	y	0.11	2	16	2	16	n	0.06	1	16	1	16	n	0.06	1	16	1	16	n	ENSMUSG00000055024.13	Ep300	chr15	protein_coding	E1A binding protein p300
novel_NIR_6989	chr15	81555348	81559734	+	81555348	81559716	A3SS	ENSMUST00000023029.15	novel	0.00	0	18	0	18	n	0.00	0	19	0	19	n	0.00	0	25	0	25	n	0.00	0	27	0	27	n	0.00	0	32	0	32	n	0.00	0	7	0	7	n	0.00	0	23	0	23	n	0.00	0	16	0	16	n	0.00	0	18	0	18	n	0.17	5	25	5	25	y	0.00	0	20	0	20	n	0.00	0	18	0	18	n	ENSMUSG00000022394.15	L3mbtl2	chr15	protein_coding	L3MBTL2 polycomb repressive complex 1 subunit
novel_NIR_6990	chr15	81555348	81559734	+	81555348	81560459	A3SS	ENSMUST00000174274.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022394.15	L3mbtl2	chr15	protein_coding	L3MBTL2 polycomb repressive complex 1 subunit
novel_NIR_6991	chr15	81696422	81699145	+	81695347	81699145	A5SS	ENSMUST00000168200.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000022389.16	Tef	chr15	protein_coding	thyrotroph embryonic factor
novel_NIR_6992	chr15	81696422	81699145	+	81696492	81699145	A5SS	ENSMUST00000172208.2	novel	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.12	2	15	2	15	n	0.00	0	17	0	17	n	0.00	0	5	0	5	n	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.29	2	5	2	5	y	0.00	0	22	0	22	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	ENSMUSG00000022389.16	Tef	chr15	protein_coding	thyrotroph embryonic factor
novel_NIR_6993	chr15	81699462	81704740	+	81699462	81705400	A3SS	ENSMUST00000109553.10	novel	0.15	15	83	15	83	y	0.00	0	78	0	78	n	0.07	4	50	4	50	n	0.07	11	144	11	144	n	0.03	4	138	4	138	n	0.00	0	13	0	13	n	0.05	6	120	6	120	n	0.10	5	43	5	43	n	0.08	8	91	8	91	n	0.08	19	208	19	208	n	0.04	5	108	5	108	n	0.08	15	173	15	173	n	ENSMUSG00000022389.16	Tef	chr15	protein_coding	thyrotroph embryonic factor
novel_NIR_6994	chr15	81750093	81754411	-	81750093	81751369	5pMXE	ENSMUST00000230134.2	novel	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.33	2	4	2	4	y	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000061360.9	Phf5a	chr15	protein_coding	PHD finger protein 5A
novel_NIR_6995	chr15	81750093	81754606	-	81750093	81751369	5pMXE	ENSMUST00000230134.2	novel	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.20	2	8	2	8	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000061360.9	Phf5a	chr15	protein_coding	PHD finger protein 5A
novel_NIR_6996	chr15	81750093	81754690	-	81750093	81751369	5pMXE	ENSMUST00000230134.2	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.29	2	5	2	5	y	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000061360.9	Phf5a	chr15	protein_coding	PHD finger protein 5A
novel_NIR_6997	chr15	81801471	81801675	-	81801471	81802445	A5SS	ENSMUST00000230842.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000022476.9	Polr3h	chr15	protein_coding	polymerase (RNA) III (DNA directed) polypeptide H
novel_NIR_6998	chr15	81904485	81906646	+	81901399	81906646	A5SS	ENSMUST00000168581.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	1	2	1	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022471.15	Xrcc6	chr15	protein_coding	X-ray repair complementing defective repair in Chinese hamster cells 6
novel_NIR_6999	chr15	81918091	81919878	+	81912355	81919878	A5SS	ENSMUST00000164920.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022471.15	Xrcc6	chr15	protein_coding	X-ray repair complementing defective repair in Chinese hamster cells 6
novel_NIR_7000	chr15	81918091	81919878	+	81913925	81919878	A5SS	ENSMUST00000164775.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022471.15	Xrcc6	chr15	protein_coding	X-ray repair complementing defective repair in Chinese hamster cells 6
novel_NIR_7001	chr15	8204401	8205603	+	8204560	8205603	A5SS&ES	ENSMUST00000110617.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000039801.8	Cplane1	chr15	protein_coding	ciliogenesis and planar polarity effector 1
novel_NIR_7002	chr15	82088037	82088173	+	82088037	82088228	A3SS	ENSMUST00000229336.2	novel	0.64	9	5	9	5	y	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.56	5	4	5	4	y	0.38	6	10	6	10	y	1.00	8	0	8	0	y	0.64	7	4	7	4	y	0.78	7	2	7	2	y	0.00	0	2	0	2	n	0.88	7	1	7	1	y	0.75	3	1	3	1	y	0.50	3	3	3	3	y	ENSMUSG00000022463.9	Srebf2	chr15	protein_coding	sterol regulatory element binding factor 2
novel_NIR_7003	chr15	82230410	82232101	+	82223286	82232101	A5SS	ENSMUST00000160994.8	novel	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	ENSMUSG00000022452.17	Smdt1	chr15	protein_coding	single-pass membrane protein with aspartate rich tail 1
novel_NIR_7004	chr15	82230410	82232101	+	82225304	82232101	A5SS	ENSMUST00000162705.2	novel	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	ENSMUSG00000022452.17	Smdt1	chr15	protein_coding	single-pass membrane protein with aspartate rich tail 1
novel_NIR_7005	chr15	82230410	82232101	+	82231546	82232101	5pMXE	ENSMUST00000159054.2	novel	1.00	3	0	3	0	y	0.60	3	2	3	2	y	0.25	1	3	1	3	n	0.33	1	2	1	2	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.62	5	3	5	3	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.71	5	2	5	2	y	1.00	2	0	2	0	y	0.75	3	1	3	1	y	ENSMUSG00000022452.17	Smdt1	chr15	protein_coding	single-pass membrane protein with aspartate rich tail 1
novel_NIR_7006	chr15	82235259	82238282	-	82234572	82238282	A3SS	ENSMUST00000230494.2	novel	0.00	0	30	0	30	n	0.00	0	37	0	37	n	0.00	0	46	0	46	n	0.48	15	16	15	16	y	0.00	0	19	0	19	n	0.00	0	10	0	10	n	0.00	0	31	0	31	n	0.00	0	12	0	12	n	0.00	0	17	0	17	n	0.00	0	28	0	28	n	0.00	0	33	0	33	n	0.00	0	31	0	31	n	ENSMUSG00000022450.7	Ndufa6	chr15	protein_coding	NADH:ubiquinone oxidoreductase subunit A6
novel_NIR_7007	chr15	82235259	82238282	-	82236636	82238282	A3SS&ES	ENSMUST00000229537.2	novel	0.00	0	5	0	5	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.65	15	8	15	8	y	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	ENSMUSG00000022450.7	Ndufa6	chr15	protein_coding	NADH:ubiquinone oxidoreductase subunit A6
novel_NIR_7008	chr15	82235295	82237458	-	82234572	82237458	A3SS	ENSMUST00000230676.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	ENSMUSG00000022450.7	Ndufa6	chr15	protein_coding	NADH:ubiquinone oxidoreductase subunit A6
novel_NIR_7009	chr15	82235295	82237458	-	82235295	82236534	5pMXE	ENSMUST00000229427.2	novel	0.12	1	7	1	7	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.31	4	9	4	9	y	0.00	0	11	0	11	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.50	1	1	1	1	n	0.09	1	10	1	10	n	0.00	0	8	0	8	n	0.29	2	5	2	5	y	0.00	0	6	0	6	n	ENSMUSG00000022450.7	Ndufa6	chr15	protein_coding	NADH:ubiquinone oxidoreductase subunit A6
novel_NIR_7010	chr15	82235295	82238295	-	82235295	82236534	5pMXE	ENSMUST00000229427.2	novel	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	-	-	-	-	-	-	0.22	2	7	2	7	y	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	ENSMUSG00000022450.7	Ndufa6	chr15	protein_coding	NADH:ubiquinone oxidoreductase subunit A6
novel_NIR_7011	chr15	82235295	82238328	-	82235295	82236534	5pMXE	ENSMUST00000229427.2	novel	0.00	0	7	0	7	n	0.43	3	4	3	4	y	0.00	0	2	0	2	n	0.31	4	9	4	9	y	0.27	4	11	4	11	y	-	-	-	-	-	-	0.53	8	7	8	7	y	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.38	3	5	3	5	y	0.00	0	6	0	6	n	ENSMUSG00000022450.7	Ndufa6	chr15	protein_coding	NADH:ubiquinone oxidoreductase subunit A6
novel_NIR_7012	chr15	82235295	82238691	-	82235295	82236534	5pMXE	ENSMUST00000229427.2	novel	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.10	1	9	1	9	n	0.00	0	11	0	11	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	ENSMUSG00000022450.7	Ndufa6	chr15	protein_coding	NADH:ubiquinone oxidoreductase subunit A6
novel_NIR_7013	chr15	82235307	82238282	-	82236636	82238282	A3SS&ES	ENSMUST00000229537.2	novel	0.00	0	5	0	5	n	0.00	0	3	0	3	n	1.00	4	0	4	0	y	0.00	0	8	0	8	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.23	3	10	3	10	y	0.25	1	3	1	3	n	ENSMUSG00000022450.7	Ndufa6	chr15	protein_coding	NADH:ubiquinone oxidoreductase subunit A6
novel_NIR_7014	chr15	82235312	82238282	-	82234572	82238282	A3SS	ENSMUST00000230494.2	novel	0.12	4	30	4	30	n	0.00	0	37	0	37	n	0.06	3	46	3	46	n	0.00	0	16	0	16	n	0.00	0	19	0	19	n	0.00	0	10	0	10	n	0.06	2	31	2	31	n	0.00	0	12	0	12	n	0.32	8	17	8	17	y	0.00	0	28	0	28	n	0.20	8	33	8	33	y	0.00	0	31	0	31	n	ENSMUSG00000022450.7	Ndufa6	chr15	protein_coding	NADH:ubiquinone oxidoreductase subunit A6
novel_NIR_7015	chr15	82235312	82238282	-	82236636	82238282	A3SS&ES	ENSMUST00000229537.2	novel	0.44	4	5	4	5	y	0.00	0	3	0	3	n	1.00	3	0	3	0	y	0.00	0	8	0	8	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.22	2	7	2	7	y	-	-	-	-	-	-	0.57	8	6	8	6	y	0.00	0	4	0	4	n	0.44	8	10	8	10	y	0.00	0	3	0	3	n	ENSMUSG00000022450.7	Ndufa6	chr15	protein_coding	NADH:ubiquinone oxidoreductase subunit A6
novel_NIR_7016	chr15	82235327	82238282	-	82236636	82238282	A3SS&ES	ENSMUST00000229537.2	novel	0.00	0	5	0	5	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.22	2	7	2	7	y	-	-	-	-	-	-	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.25	1	3	1	3	n	ENSMUSG00000022450.7	Ndufa6	chr15	protein_coding	NADH:ubiquinone oxidoreductase subunit A6
novel_NIR_7017	chr15	82255926	82273653	-	82273545	82273653	3pMXE	ENSMUST00000170255.2	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.60	6	4	6	4	y	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.33	2	4	2	4	y	0.88	7	1	7	1	y	0.00	0	3	0	3	n	ENSMUSG00000068085.7	Cyp2d11	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 11
novel_NIR_7018	chr15	82256778	82257073	-	82256778	82258499	A5SS	ENSMUST00000228986.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	4	0	4	0	y	0.00	0	6	0	6	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000061740.9	Cyp2d22	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 22
novel_NIR_7019	chr15	82256778	82258105	-	82256778	82258499	A5SS	ENSMUST00000228986.2	novel	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000061740.9	Cyp2d22	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 22
novel_NIR_7020	chr15	82257995	82258499	-	82256778	82258499	A3SS	ENSMUST00000228986.2	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000061740.9	Cyp2d22	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 22
novel_NIR_7021	chr15	82260238	82264273	-	82260242	82264273	A3SS	ENSMUST00000023083.9	novel	0.15	11	64	11	64	y	0.00	0	39	0	39	n	0.16	5	26	5	26	y	0.07	3	38	3	38	n	0.15	9	52	9	52	y	0.11	2	17	2	17	n	0.04	2	47	2	47	n	0.00	0	29	0	29	n	0.09	4	39	4	39	n	0.08	5	56	5	56	n	0.07	3	38	3	38	n	0.05	3	63	3	63	n	ENSMUSG00000061740.9	Cyp2d22	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 22
novel_NIR_7022	chr15	82260242	82263622	-	82260242	82264273	A5SS	ENSMUST00000023083.9	novel	0.04	3	64	3	64	n	0.05	2	39	2	39	n	0.07	2	26	2	26	n	0.05	2	38	2	38	n	0.07	4	52	4	52	n	0.00	0	17	0	17	n	0.10	5	47	5	47	n	0.03	1	29	1	29	n	0.07	3	39	3	39	n	0.05	3	56	3	56	n	0.03	1	38	1	38	n	0.15	11	63	11	63	y	ENSMUSG00000061740.9	Cyp2d22	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 22
novel_NIR_7023	chr15	82260242	82264279	-	82260242	82264273	A5SS	ENSMUST00000023083.9	novel	0.83	309	64	309	64	y	0.83	191	39	191	39	y	0.85	145	26	145	26	y	0.88	291	38	291	38	y	0.89	409	52	409	52	y	0.89	136	17	136	17	y	0.89	380	47	380	47	y	0.83	146	29	146	29	y	0.86	248	39	248	39	y	0.86	344	56	344	56	y	0.89	306	38	306	38	y	0.85	358	63	358	63	y	ENSMUSG00000061740.9	Cyp2d22	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 22
novel_NIR_7024	chr15	82274728	82275094	-	82274723	82275094	A3SS	ENSMUST00000170255.2	novel	1.00	1	0	1	0	n	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000068085.7	Cyp2d11	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 11
novel_NIR_7025	chr15	82276664	82290108	-	82288107	82290108	3pMXE	ENSMUST00000230248.2	novel	-	-	-	-	-	-	0.22	2	7	2	7	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000094806.3	Cyp2d10	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 10
novel_NIR_7026	chr15	82276748	82291135	-	82276748	82277960	5pMXE	ENSMUST00000170255.2	novel	0.00	0	16	0	16	n	0.00	0	15	0	15	n	0.00	0	16	0	16	n	0.07	1	14	1	14	n	0.00	0	11	0	11	n	0.12	1	7	1	7	n	0.17	3	15	3	15	y	0.00	0	6	0	6	n	0.00	0	19	0	19	n	0.00	0	25	0	25	n	0.00	0	24	0	24	n	0.20	3	12	3	12	y	ENSMUSG00000068085.7	Cyp2d11	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 11
novel_NIR_7027	chr15	82287297;82287500	82287402;82287920	-	82287297	82287920	cassetteExon	ENSMUST00000230198.2	novel	0.44	62.0	78	0;124	78	n	0.21	30.5	117	0;61	117	n	0.13	15.0	103	0;30	103	n	0.44	53.0	68	0;106	68	n	0.30	56.5	131	0;113	131	n	0.17	13.5	64	0;27	64	n	0.30	45.0	104	0;90	104	n	0.10	7.0	60	0;14	60	n	0.39	39.0	60	0;78	60	n	0.38	82.5	133	11;154	133	y	0.43	83.0	108	0;166	108	n	0.41	62.5	91	0;125	91	n	ENSMUSG00000094806.3	Cyp2d10	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 10
novel_NIR_7028	chr15	82287500	82287920	-	82287297	82287920	A3SS	ENSMUST00000230198.2	novel	0.61	124	78	124	78	y	0.34	61	117	61	117	y	0.23	30	103	30	103	y	0.61	106	68	106	68	y	0.46	113	131	113	131	y	0.30	27	64	27	64	y	0.46	90	104	90	104	y	0.19	14	60	14	60	y	0.57	78	60	78	60	y	0.54	154	133	154	133	n	0.61	166	108	166	108	y	0.58	125	91	125	91	y	ENSMUSG00000094806.3	Cyp2d10	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 10
novel_NIR_7029	chr15	82287539	82288007	-	82287539	82289436	A5SS	ENSMUST00000229911.2	novel	1.00	3	0	3	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	n	0.60	3	2	3	2	y	1.00	6	0	6	0	n	-	-	-	-	-	-	1.00	9	0	9	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000094806.3	Cyp2d10	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 10
novel_NIR_7030	chr15	82287539;82288103	82288007;82289436	-	82287539	82289436	cassetteExon	ENSMUST00000229911.2	novel	1.00	1.5	0	3;0	0	n	1.00	4.0	0	0;8	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4.0	0	6;2	0	y	0.43	1.5	2	3;0	2	n	1.00	5.5	0	6;5	0	y	-	-	-	-	-	-	1.00	4.5	0	9;0	0	n	1.00	7.0	0	0;14	0	n	-	-	-	-	-	-	1.00	2.0	0	0;4	0	n	ENSMUSG00000094806.3	Cyp2d10	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 10
novel_NIR_7031	chr15	82288103	82289436	-	82287539	82289436	A3SS	ENSMUST00000229911.2	novel	-	-	-	-	-	-	1.00	8	0	8	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	n	0.00	0	2	0	2	n	1.00	5	0	5	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	14	0	14	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000094806.3	Cyp2d10	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 10
novel_NIR_7032	chr15	82288107	82288295	-	82288107	82290108	A5SS	ENSMUST00000230248.2	novel	1.00	1	0	1	0	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.50	3	3	3	3	y	1.00	2	0	2	0	y	0.00	0	7	0	7	n	0.25	2	6	2	6	y	0.92	11	1	11	1	y	0.50	6	6	6	6	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000094806.3	Cyp2d10	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 10
novel_NIR_7033	chr15	82288107	82289687	-	82288107	82290108	A5SS	ENSMUST00000230248.2	novel	1.00	17	0	17	0	y	0.74	20	7	20	7	y	0.69	11	5	11	5	y	1.00	12	0	12	0	y	0.73	8	3	8	3	y	-	-	-	-	-	-	0.61	11	7	11	7	y	0.57	8	6	8	6	y	0.94	17	1	17	1	y	0.65	11	6	11	6	y	1.00	18	0	18	0	y	-	-	-	-	-	-	ENSMUSG00000094806.3	Cyp2d10	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 10
novel_NIR_7034	chr15	82288445	82289481	-	82288445	82289687	A5SS	ENSMUST00000229628.2	novel	1.00	18	0	18	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	20	0	20	0	y	1.00	5	0	5	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.94	33	2	33	2	n	1.00	37	0	37	0	y	1.00	5	0	5	0	y	ENSMUSG00000094806.3	Cyp2d10	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 10
novel_NIR_7035	chr15	82288445;82289591	82289481;82289687	-	82288445	82289687	cassetteExon	ENSMUST00000229628.2	novel	1.00	9.0	0	18;0	0	n	1.00	3.0	0	6;0	0	n	-	-	-	-	-	-	1.00	10.0	0	20;0	0	n	1.00	14.0	0	5;23	0	y	1.00	4.5	0	0;9	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1.0	0	2;0	0	n	0.89	16.5	2	33;0	2	n	1.00	18.5	0	37;0	0	n	1.00	2.5	0	5;0	0	n	ENSMUSG00000094806.3	Cyp2d10	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 10
novel_NIR_7036	chr15	82289591	82289687	-	82288445	82289687	A3SS	ENSMUST00000229628.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	23	0	23	0	n	1.00	9	0	9	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000094806.3	Cyp2d10	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 10
novel_NIR_7037	chr15	82289596	82290108	-	82288107	82290108	A3SS	ENSMUST00000230248.2	novel	-	-	-	-	-	-	0.00	0	7	0	7	n	0.38	3	5	3	5	y	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.12	1	7	1	7	n	0.25	2	6	2	6	y	0.00	0	1	0	1	n	0.00	0	6	0	6	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000094806.3	Cyp2d10	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 10
novel_NIR_7038	chr15	82327869	82328706	+	82327873	82328706	A5SS	ENSMUST00000230820.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000116472.2	Gm49421	chr15	unprocessed_pseudogene	predicted gene, 49421
novel_NIR_7039	chr15	82327869	82337799	+	82317913	82337799	A5SS	ENSMUST00000229793.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	ENSMUSG00000068086.7	Cyp2d9	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 9
novel_NIR_7040	chr15	82327869	82337828	+	82336841	82337828	5pMXE	ENSMUST00000229473.2	novel	0.16	11	59	11	59	y	0.12	5	38	5	38	n	0.00	0	38	0	38	n	0.07	8	103	8	103	n	0.00	0	100	0	100	n	0.00	0	39	0	39	n	0.04	5	113	5	113	n	0.00	0	11	0	11	n	0.00	0	49	0	49	n	0.00	0	87	0	87	n	0.00	0	73	0	73	n	0.00	0	64	0	64	n	ENSMUSG00000068086.7	Cyp2d9	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 9
novel_NIR_7041	chr15	82336841	82337835	+	82336841	82337828	A3SS	ENSMUST00000229473.2	novel	0.43	45	59	45	59	y	0.00	0	38	0	38	n	0.25	13	38	13	38	y	0.00	0	103	0	103	n	0.00	0	100	0	100	n	0.00	0	39	0	39	n	0.00	0	113	0	113	n	0.31	5	11	5	11	y	0.00	0	49	0	49	n	0.00	0	87	0	87	n	0.00	0	73	0	73	n	0.39	41	64	41	64	y	ENSMUSG00000068086.7	Cyp2d9	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 9
novel_NIR_7042	chr15	82337970	82338241	+	82337970	82338482	A3SS	ENSMUST00000229793.2	novel	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.00	0	16	0	16	n	0.75	6	2	6	2	y	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.18	3	14	3	14	y	0.00	0	1	0	1	n	0.25	2	6	2	6	n	0.43	10	13	10	13	y	0.00	0	4	0	4	n	0.50	5	5	5	5	y	ENSMUSG00000068086.7	Cyp2d9	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 9
novel_NIR_7043	chr15	82338319	82338482	+	82337970	82338482	A5SS	ENSMUST00000229793.2	novel	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.00	0	16	0	16	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.83	5	1	5	1	y	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	ENSMUSG00000068086.7	Cyp2d9	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 9
novel_NIR_7044	chr15	82338391	82338487	+	82338391	82338572	A3SS	ENSMUST00000231136.2	novel	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	1	0	1	n	0.00	0	16	0	16	n	0.60	3	2	3	2	y	0.00	0	13	0	13	n	0.00	0	17	0	17	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	ENSMUSG00000068086.7	Cyp2d9	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 9
novel_NIR_7045	chr15	82339335	82339973	+	82339451	82339973	A5SS	ENSMUST00000230191.2	novel	0.05	6	123	6	123	n	0.10	15	130	15	130	n	0.20	21	82	21	82	y	0.28	66	171	66	171	y	0.12	25	189	25	189	n	0.25	17	52	17	52	y	0.21	52	196	52	196	y	0.15	17	93	17	93	y	0.26	52	146	52	146	y	0.07	19	240	19	240	n	0.28	53	133	53	133	y	0.28	31	80	31	80	y	ENSMUSG00000068086.7	Cyp2d9	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 9
novel_NIR_7046	chr15	82339451	82339977	+	82339451	82339973	A3SS	ENSMUST00000230191.2	novel	0.00	0	123	0	123	n	0.03	4	130	4	130	n	0.15	15	82	15	82	y	0.13	26	171	26	171	n	0.12	25	189	25	189	n	0.21	14	52	14	52	y	0.03	7	196	7	196	n	0.11	12	93	12	93	n	0.00	0	146	0	146	n	0.06	15	240	15	240	n	0.00	0	133	0	133	n	0.11	10	80	10	80	n	ENSMUSG00000068086.7	Cyp2d9	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 9
novel_NIR_7047	chr15	82339451	82339977	+	82339451	82340535	A3SS	ENSMUST00000230000.2	novel	0.00	0	57	0	57	n	0.06	4	65	4	65	n	0.31	15	33	15	33	y	0.29	26	63	26	63	y	0.31	25	56	25	56	y	0.40	14	21	14	21	y	0.09	7	70	7	70	n	0.38	12	20	12	20	y	0.00	0	60	0	60	n	0.16	15	81	15	81	y	0.00	0	61	0	61	n	0.19	10	44	10	44	n	ENSMUSG00000068086.7	Cyp2d9	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 9
novel_NIR_7048	chr15	82339451	82340074	+	82339451	82340535	A3SS	ENSMUST00000230000.2	novel	0.08	5	57	5	57	n	0.00	0	65	0	65	n	0.03	1	33	1	33	n	0.19	15	63	15	63	y	0.00	0	56	0	56	n	0.05	1	21	1	21	n	0.10	8	70	8	70	n	0.09	2	20	2	20	n	0.03	2	60	2	60	n	0.04	3	81	3	81	n	0.08	5	61	5	61	n	0.06	3	44	3	44	n	ENSMUSG00000068086.7	Cyp2d9	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 9
novel_NIR_7049	chr15	82339451	82340080	+	82339451	82339973	A3SS	ENSMUST00000230191.2	novel	0.00	0	123	0	123	n	0.19	30	130	30	130	y	0.00	0	82	0	82	n	0.10	18	171	18	171	n	0.16	36	189	36	189	y	0.12	7	52	7	52	n	0.00	0	196	0	196	n	0.17	19	93	19	93	y	0.00	0	146	0	146	n	0.02	6	240	6	240	n	0.06	8	133	8	133	n	0.00	0	80	0	80	n	ENSMUSG00000068086.7	Cyp2d9	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 9
novel_NIR_7050	chr15	82339451	82340080	+	82339451	82340535	A3SS	ENSMUST00000230000.2	novel	0.00	0	57	0	57	n	0.32	30	65	30	65	y	0.00	0	33	0	33	n	0.22	18	63	18	63	y	0.39	36	56	36	56	y	0.25	7	21	7	21	y	0.00	0	70	0	70	n	0.49	19	20	19	20	y	0.00	0	60	0	60	n	0.07	6	81	6	81	n	0.12	8	61	8	61	n	0.00	0	44	0	44	n	ENSMUSG00000068086.7	Cyp2d9	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 9
novel_NIR_7051	chr15	82339451	82442557	+	82339451	82340535	3pMXE	ENSMUST00000230000.2	novel	0.21	15	57	15	57	y	0.02	1	65	1	65	n	0.00	0	33	0	33	n	0.00	0	63	0	63	n	0.00	0	56	0	56	n	0.00	0	21	0	21	n	0.04	3	70	3	70	n	0.00	0	20	0	20	n	0.20	15	60	15	60	y	0.00	0	81	0	81	n	0.23	18	61	18	61	y	0.00	0	44	0	44	n	ENSMUSG00000068086.7	Cyp2d9	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 9
novel_NIR_7052	chr15	82339451;82340010	82339977;82340535	+	82339451	82340535	cassetteExon	ENSMUST00000230000.2	novel	0.00	0.0	57	0;0	57	n	0.03	2.0	65	4;0	65	n	0.19	7.5	33	15;0	33	n	0.17	13.0	63	26;0	63	n	0.18	12.5	56	25;0	56	n	0.25	7.0	21	14;0	21	n	0.05	3.5	70	7;0	70	n	0.23	6.0	20	12;0	20	n	0.00	0.0	60	0;0	60	n	0.08	7.5	81	15;0	81	n	0.00	0.0	61	0;0	61	n	0.18	9.5	44	10;9	44	y	ENSMUSG00000068086.7	Cyp2d9	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 9
novel_NIR_7053	chr15	82524701	82524893	-	82524701	82525986	A5SS	ENSMUST00000238885.2	novel	0.00	0	5	0	5	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.50	6	6	6	6	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.64	7	4	7	4	y	ENSMUSG00000118516.2	Cyp2d13	chr15	polymorphic_pseudogene	cytochrome P450, family 2, subfamily d, polypeptide 13
novel_NIR_7054	chr15	82524701	82524901	-	82524701	82525986	A5SS	ENSMUST00000238885.2	novel	0.00	0	5	0	5	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.50	6	6	6	6	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000118516.2	Cyp2d13	chr15	polymorphic_pseudogene	cytochrome P450, family 2, subfamily d, polypeptide 13
novel_NIR_7055	chr15	82524701	82524904	-	82524701	82524986	A5SS	ENSMUST00000239057.2	novel	0.45	48	58	48	58	y	0.45	35	42	35	42	y	0.21	7	27	7	27	y	0.40	61	90	61	90	y	0.50	66	67	66	67	y	0.29	10	25	10	25	y	0.39	45	70	45	70	y	0.52	23	21	23	21	y	0.53	50	44	50	44	y	0.43	65	87	65	87	y	0.46	59	70	59	70	y	0.56	55	43	55	43	y	ENSMUSG00000118516.2	Cyp2d13	chr15	polymorphic_pseudogene	cytochrome P450, family 2, subfamily d, polypeptide 13
novel_NIR_7056	chr15	82524701	82524904	-	82524701	82525986	A5SS	ENSMUST00000238885.2	novel	0.91	48	5	48	5	y	0.90	35	4	35	4	y	1.00	7	0	7	0	y	0.91	61	6	61	6	y	0.92	66	6	66	6	y	0.77	10	3	10	3	y	0.90	45	5	45	5	y	0.96	23	1	23	1	y	0.93	50	4	50	4	y	0.94	65	4	65	4	y	0.98	59	1	59	1	y	0.93	55	4	55	4	y	ENSMUSG00000118516.2	Cyp2d13	chr15	polymorphic_pseudogene	cytochrome P450, family 2, subfamily d, polypeptide 13
novel_NIR_7057	chr15	82524701	82525065	-	82524701	82525986	A5SS	ENSMUST00000238885.2	novel	0.00	0	5	0	5	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.50	1	1	1	1	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.83	5	1	5	1	y	0.20	1	4	1	4	n	ENSMUSG00000118516.2	Cyp2d13	chr15	polymorphic_pseudogene	cytochrome P450, family 2, subfamily d, polypeptide 13
novel_NIR_7058	chr15	82526496	82544798	+	82505384	82544798	A5SS	ENSMUST00000231012.2	novel	1.00	14	0	14	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	11	0	11	0	y	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	16	0	16	0	y	1.00	2	0	2	0	y	1.00	10	0	10	0	y	1.00	11	0	11	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000116130.2	Gm49431	chr15	lncRNA	predicted gene, 49431
novel_NIR_7059	chr15	82527350	82544798	+	82505384	82544798	A5SS	ENSMUST00000231012.2	novel	1.00	63	0	63	0	y	1.00	72	0	72	0	y	1.00	14	0	14	0	y	1.00	74	0	74	0	y	1.00	86	0	86	0	y	1.00	14	0	14	0	y	1.00	112	0	112	0	y	1.00	26	0	26	0	y	1.00	77	0	77	0	y	1.00	101	0	101	0	y	1.00	66	0	66	0	y	1.00	51	0	51	0	y	ENSMUSG00000116130.2	Gm49431	chr15	lncRNA	predicted gene, 49431
novel_NIR_7060	chr15	82571361	82573297	-	82573193	82573297	3pMXE	ENSMUST00000229594.3	novel	-	-	-	-	-	-	0.00	0	7	0	7	n	-	-	-	-	-	-	0.50	8	8	8	8	y	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	10	0	10	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	19	0	19	n	0.14	2	12	2	12	n	-	-	-	-	-	-	ENSMUSG00000075517.6	Cyp2d37-ps	chr15	transcribed_unprocessed_pseudogene	cytochrome P450, family 2, subfamily d, polypeptide 37, pseudogene
novel_NIR_7061	chr15	82573129	82573297	-	82573193	82573297	A3SS	ENSMUST00000229594.3	novel	-	-	-	-	-	-	0.12	1	7	1	7	n	-	-	-	-	-	-	0.43	6	8	6	8	y	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	10	0	10	n	0.25	2	6	2	6	y	-	-	-	-	-	-	0.50	19	19	19	19	y	0.00	0	12	0	12	n	-	-	-	-	-	-	ENSMUSG00000075517.6	Cyp2d37-ps	chr15	transcribed_unprocessed_pseudogene	cytochrome P450, family 2, subfamily d, polypeptide 37, pseudogene
novel_NIR_7062	chr15	82573200	82573297	-	82573193	82573297	A3SS	ENSMUST00000229594.3	novel	1.00	21	0	21	0	y	0.73	19	7	19	7	y	-	-	-	-	-	-	0.67	16	8	16	8	y	0.75	24	8	24	8	y	-	-	-	-	-	-	0.73	27	10	27	10	y	0.57	8	6	8	6	y	1.00	12	0	12	0	y	0.65	35	19	35	19	y	0.83	57	12	57	12	y	1.00	17	0	17	0	y	ENSMUSG00000075517.6	Cyp2d37-ps	chr15	transcribed_unprocessed_pseudogene	cytochrome P450, family 2, subfamily d, polypeptide 37, pseudogene
novel_NIR_7063	chr15	82573436	82573869	-	82573412	82573869	A3SS	ENSMUST00000229594.3	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000075517.6	Cyp2d37-ps	chr15	transcribed_unprocessed_pseudogene	cytochrome P450, family 2, subfamily d, polypeptide 37, pseudogene
novel_NIR_7064	chr15	82574702	82575172	-	82574739	82575172	A3SS	ENSMUST00000100380.5	novel	0.53	80	72	80	72	y	0.54	97	81	97	81	y	0.07	1	13	1	13	n	0.55	122	100	122	100	y	0.51	91	88	91	88	y	0.33	11	22	11	22	y	0.49	99	103	99	103	y	0.49	37	39	37	39	y	0.60	151	101	151	101	y	0.52	135	127	135	127	y	0.49	130	133	130	133	y	0.52	105	98	105	98	y	ENSMUSG00000075517.6	Cyp2d37-ps	chr15	transcribed_unprocessed_pseudogene	cytochrome P450, family 2, subfamily d, polypeptide 37, pseudogene
novel_NIR_7065	chr15	82574702	82575401	-	82574739	82575401	A3SS	ENSMUST00000229594.3	novel	0.27	3	8	3	8	y	0.27	3	8	3	8	y	0.00	0	1	0	1	n	0.50	9	9	9	9	y	0.43	10	13	10	13	y	0.00	0	3	0	3	n	0.37	7	12	7	12	y	0.17	1	5	1	5	n	0.29	5	12	5	12	y	0.11	2	17	2	17	n	0.30	3	7	3	7	y	0.24	4	13	4	13	y	ENSMUSG00000075517.6	Cyp2d37-ps	chr15	transcribed_unprocessed_pseudogene	cytochrome P450, family 2, subfamily d, polypeptide 37, pseudogene
novel_NIR_7066	chr15	82575344	82575643	-	82575561	82575643	A3SS&ES	ENSMUST00000229594.3	novel	0.16	11	59	11	59	n	0.24	23	74	23	74	y	0.00	0	6	0	6	n	0.13	18	119	18	119	n	0.22	21	74	21	74	n	0.28	5	13	5	13	y	0.12	13	96	13	96	n	0.11	5	39	5	39	n	0.29	35	87	35	87	y	0.22	35	127	35	127	y	0.16	25	134	25	134	y	0.17	15	74	15	74	n	ENSMUSG00000075517.6	Cyp2d37-ps	chr15	transcribed_unprocessed_pseudogene	cytochrome P450, family 2, subfamily d, polypeptide 37, pseudogene
novel_NIR_7067	chr15	82575346	82575446	-	82575346	82575643	A5SS	ENSMUST00000100380.5	novel	0.21	45	166	45	166	n	0.20	53	216	53	216	y	0.00	0	19	0	19	n	0.17	51	246	51	246	y	0.19	53	224	53	224	y	0.18	7	31	7	31	y	0.13	37	239	37	239	n	0.17	19	93	19	93	y	0.11	35	294	35	294	n	0.11	41	329	41	329	n	0.19	63	267	63	267	y	0.13	34	237	34	237	n	ENSMUSG00000075517.6	Cyp2d37-ps	chr15	transcribed_unprocessed_pseudogene	cytochrome P450, family 2, subfamily d, polypeptide 37, pseudogene
novel_NIR_7068	chr15	82575795	82576170	-	82575795	82576073	A5SS	ENSMUST00000229594.3	novel	0.00	0	1	0	1	n	0.45	5	6	5	6	y	-	-	-	-	-	-	0.12	1	7	1	7	n	0.40	6	9	6	9	y	0.50	2	2	2	2	y	0.53	8	7	8	7	y	0.62	10	6	10	6	y	0.00	0	5	0	5	n	0.46	6	7	6	7	y	0.45	5	6	5	6	y	0.00	0	2	0	2	n	ENSMUSG00000075517.6	Cyp2d37-ps	chr15	transcribed_unprocessed_pseudogene	cytochrome P450, family 2, subfamily d, polypeptide 37, pseudogene
novel_NIR_7069	chr15	82575795	82576170	-	82575795	82577014	A5SS	ENSMUST00000100380.5	novel	0.00	0	52	0	52	n	0.09	5	52	5	52	n	0.00	0	1	0	1	n	0.01	1	69	1	69	n	0.09	6	59	6	59	n	0.18	2	9	2	9	y	0.11	8	63	8	63	n	0.32	10	21	10	21	y	0.00	0	106	0	106	n	0.05	6	118	6	118	n	0.06	5	85	5	85	n	0.00	0	71	0	71	n	ENSMUSG00000075517.6	Cyp2d37-ps	chr15	transcribed_unprocessed_pseudogene	cytochrome P450, family 2, subfamily d, polypeptide 37, pseudogene
novel_NIR_7070	chr15	82575795	82591313	-	82575795	82577014	5pMXE	ENSMUST00000100380.5	novel	0.13	8	52	8	52	n	0.15	9	52	9	52	y	0.50	1	1	1	1	n	0.23	21	69	21	69	y	0.20	15	59	15	59	y	0.10	1	9	1	9	n	0.15	11	63	11	63	y	0.05	1	21	1	21	n	0.18	24	106	24	106	y	0.06	8	118	8	118	n	0.15	15	85	15	85	y	0.09	7	71	7	71	n	ENSMUSG00000075517.6	Cyp2d37-ps	chr15	transcribed_unprocessed_pseudogene	cytochrome P450, family 2, subfamily d, polypeptide 37, pseudogene
novel_NIR_7071	chr15	82575795	82591313	-	82578054	82591313	3pMXE	ENSMUST00000229532.2	novel	0.30	8	19	8	19	y	0.26	9	26	9	26	y	0.50	1	1	1	1	n	0.28	21	53	21	53	y	0.23	15	49	15	49	y	0.25	1	3	1	3	n	0.17	11	52	11	52	y	0.09	1	10	1	10	n	0.28	24	63	24	63	y	0.11	8	64	8	64	n	0.33	15	30	15	30	y	0.12	7	49	7	49	n	ENSMUSG00000116354.2	Cyp2d38-ps	chr15	transcribed_unprocessed_pseudogene	cytochrome P450, family 2, subfamily d, member 38, pseudogene
novel_NIR_7072	chr15	82575795	82591313	-	82590500	82591313	3pMXE	ENSMUST00000230059.2	novel	0.24	8	25	8	25	y	0.28	9	23	9	23	y	0.25	1	3	1	3	n	0.30	21	49	21	49	y	0.33	15	31	15	31	y	0.14	1	6	1	6	n	0.26	11	32	11	32	y	0.05	1	19	1	19	n	0.50	24	24	24	24	y	0.13	8	55	8	55	n	0.36	15	27	15	27	y	0.16	7	36	7	36	y	ENSMUSG00000116354.2	Cyp2d38-ps	chr15	transcribed_unprocessed_pseudogene	cytochrome P450, family 2, subfamily d, member 38, pseudogene
novel_NIR_7073	chr15	82575807	82577014	-	82575795	82577014	A3SS	ENSMUST00000100380.5	novel	0.16	10	52	10	52	y	0.22	15	52	15	52	y	0.50	1	1	1	1	n	0.23	21	69	21	69	y	0.24	19	59	19	59	y	0.25	3	9	3	9	y	0.26	22	63	22	63	y	0.38	13	21	13	21	y	0.15	19	106	19	106	y	0.19	27	118	27	118	y	0.19	20	85	20	85	y	0.16	14	71	14	71	y	ENSMUSG00000075517.6	Cyp2d37-ps	chr15	transcribed_unprocessed_pseudogene	cytochrome P450, family 2, subfamily d, polypeptide 37, pseudogene
novel_NIR_7074	chr15	82575807	82577014	-	82576244	82577014	A3SS&ES	ENSMUST00000229594.3	novel	0.56	10	8	10	8	y	0.39	15	23	15	23	y	0.20	1	4	1	4	n	0.54	21	18	21	18	y	0.31	19	42	19	42	y	0.27	3	8	3	8	y	0.40	22	33	22	33	y	0.34	13	25	13	25	y	0.49	19	20	19	20	y	0.47	27	31	27	31	y	0.39	20	31	20	31	y	0.36	14	25	14	25	y	ENSMUSG00000075517.6	Cyp2d37-ps	chr15	transcribed_unprocessed_pseudogene	cytochrome P450, family 2, subfamily d, polypeptide 37, pseudogene
novel_NIR_7075	chr15	82577296	82591313	-	82578054	82591313	3pMXE	ENSMUST00000229532.2	novel	0.27	7	19	7	19	y	0.26	9	26	9	26	y	0.00	0	1	0	1	n	0.20	13	53	13	53	y	0.18	11	49	11	49	y	0.00	0	3	0	3	n	0.16	10	52	10	52	y	0.17	2	10	2	10	y	0.09	6	63	6	63	n	0.19	15	64	15	64	y	0.19	7	30	7	30	y	0.04	2	49	2	49	n	ENSMUSG00000116354.2	Cyp2d38-ps	chr15	transcribed_unprocessed_pseudogene	cytochrome P450, family 2, subfamily d, member 38, pseudogene
novel_NIR_7076	chr15	82577296	82591313	-	82590500	82591313	3pMXE	ENSMUST00000230059.2	novel	0.22	7	25	7	25	y	0.28	9	23	9	23	y	0.00	0	3	0	3	n	0.21	13	49	13	49	y	0.26	11	31	11	31	y	0.00	0	6	0	6	n	0.24	10	32	10	32	y	0.10	2	19	2	19	n	0.20	6	24	6	24	y	0.21	15	55	15	55	y	0.21	7	27	7	27	y	0.05	2	36	2	36	n	ENSMUSG00000116354.2	Cyp2d38-ps	chr15	transcribed_unprocessed_pseudogene	cytochrome P450, family 2, subfamily d, member 38, pseudogene
novel_NIR_7077	chr15	82578054	82590243	-	82578054	82591313	A5SS	ENSMUST00000229532.2	novel	0.34	10	19	10	19	y	0.30	11	26	11	26	n	0.00	0	1	0	1	n	0.25	18	53	18	53	y	0.27	18	49	18	49	y	0.25	1	3	1	3	n	0.20	13	52	13	52	y	0.29	4	10	4	10	y	0.21	17	63	17	63	n	0.23	19	64	19	64	y	0.41	21	30	21	30	n	0.28	19	49	19	49	n	ENSMUSG00000116354.2	Cyp2d38-ps	chr15	transcribed_unprocessed_pseudogene	cytochrome P450, family 2, subfamily d, member 38, pseudogene
novel_NIR_7078	chr15	82578054;82590471	82590243;82591313	-	82578054	82591313	cassetteExon	ENSMUST00000229532.2	novel	0.21	5.0	19	10;0	19	n	0.21	7.0	26	11;3	26	y	0.00	0.0	1	0;0	1	n	0.15	9.0	53	18;0	53	n	0.16	9.0	49	18;0	49	n	0.14	0.5	3	1;0	3	n	0.11	6.5	52	13;0	52	n	0.17	2.0	10	4;0	10	n	0.13	9.5	63	17;2	63	n	0.13	9.5	64	19;0	64	n	0.27	11.0	30	21;1	30	n	0.17	10.0	49	19;1	49	n	ENSMUSG00000116354.2	Cyp2d38-ps	chr15	transcribed_unprocessed_pseudogene	cytochrome P450, family 2, subfamily d, member 38, pseudogene
novel_NIR_7079	chr15	82578279	82591313	-	82590500	82591313	3pMXE	ENSMUST00000230059.2	novel	0.00	0	25	0	25	n	0.04	1	23	1	23	n	0.00	0	3	0	3	n	0.00	0	49	0	49	n	0.09	3	31	3	31	n	0.00	0	6	0	6	n	0.00	0	32	0	32	n	0.00	0	19	0	19	n	0.27	9	24	9	24	y	0.00	0	55	0	55	n	0.10	3	27	3	27	n	0.14	6	36	6	36	n	ENSMUSG00000116354.2	Cyp2d38-ps	chr15	transcribed_unprocessed_pseudogene	cytochrome P450, family 2, subfamily d, member 38, pseudogene
novel_NIR_7080	chr15	82664654	82665178	-	82664654;82664888	82664736;82665178	ES	ENSMUST00000180453.2	novel	0.31	5	11.0	5	11;11	y	0.36	4	7.0	4	1;13	y	0.81	13	3.0	13	2;4	y	0.52	6	5.5	6	5;6	y	0.27	10	26.5	10	31;22	y	0.32	5	10.5	5	11;10	y	0.39	13	20.5	13	18;23	y	0.42	11	15.5	11	16;15	y	0.00	0	4.5	0	6;3	n	0.12	1	7.5	1	9;6	n	0.34	5	9.5	5	7;12	y	0.25	1	3.0	1	5;1	n	ENSMUSG00000058613.7	Cyp2d41-ps	chr15	unprocessed_pseudogene	cytochrome P450, family 2, subfamily d, member 41, pseudogene
novel_NIR_7081	chr15	82677061	82677421	-	82677061	82677406	A5SS	ENSMUST00000229512.2	novel	0.00	0	38	0	38	n	0.00	0	49	0	49	n	0.00	0	32	0	32	n	0.15	7	39	7	39	y	0.00	0	50	0	50	n	0.00	0	27	0	27	n	0.00	0	51	0	51	n	0.00	0	37	0	37	n	0.00	0	36	0	36	n	0.32	35	76	35	76	y	0.24	19	60	19	60	y	0.00	0	43	0	43	n	ENSMUSG00000022445.8	Cyp2d26	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 26
novel_NIR_7082	chr15	82677462	82678186	-	82677469	82678186	A3SS	ENSMUST00000229387.2	novel	0.00	0	50	0	50	n	0.00	0	60	0	60	n	0.28	10	26	10	26	y	0.00	0	52	0	52	n	0.00	0	66	0	66	n	0.00	0	20	0	20	n	0.00	0	76	0	76	n	0.00	0	44	0	44	n	0.00	0	48	0	48	n	0.40	51	76	51	76	y	0.00	0	44	0	44	n	0.55	54	45	54	45	y	ENSMUSG00000022445.8	Cyp2d26	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 26
novel_NIR_7083	chr15	82693988	82695162	-	82693988	82698682	A5SS	ENSMUST00000109510.10	novel	0.40	2	3	2	3	y	0.33	1	2	1	2	n	0.50	1	1	1	1	n	0.25	2	6	2	6	n	0.57	4	3	4	3	n	-	-	-	-	-	-	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.50	2	2	2	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000041852.16	Tcf20	chr15	protein_coding	transcription factor 20
novel_NIR_7084	chr15	82693988;82695305	82695162;82699812	-	82693988;82698804	82698682;82699812	MXE	ENSMUST00000109510.10	novel	0.29	1.0	2.5	2;0	3;2	n	0.33	0.5	1.0	1;0	2;0	n	0.33	0.5	1.0	1;0	1;1	n	0.22	1.0	3.5	2;0	6;1	n	0.58	3.5	2.5	4;3	3;2	y	-	-	-	-	-	-	0.17	1.0	5.0	1;1	4;6	n	0.00	0.0	2.0	0;0	3;1	n	0.00	0.0	3.0	0;0	1;5	n	0.60	1.5	1.0	2;1	2;0	n	0.00	0.0	1.0	0;0	2;0	n	0.50	2.0	2.0	0;4	4;0	n	ENSMUSG00000041852.16	Tcf20	chr15	protein_coding	transcription factor 20
novel_NIR_7085	chr15	82695305	82699812	-	82698804	82699812	A3SS&ES	ENSMUST00000109510.10	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.60	3	2	3	2	n	-	-	-	-	-	-	0.14	1	6	1	6	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000041852.16	Tcf20	chr15	protein_coding	transcription factor 20
novel_NIR_7086	chr15	82698771	82699812	-	82698804	82699812	A3SS	ENSMUST00000109510.10	novel	0.60	3	2	3	2	y	-	-	-	-	-	-	0.80	4	1	4	1	y	0.00	0	1	0	1	n	0.67	4	2	4	2	y	1.00	1	0	1	0	n	0.14	1	6	1	6	n	0.50	1	1	1	1	n	0.17	1	5	1	5	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000041852.16	Tcf20	chr15	protein_coding	transcription factor 20
novel_NIR_7087	chr15	82709525	82783703	-	82709525	82735714	A5SS&ES	ENSMUST00000048966.7	novel	0.23	6	20	6	20	y	0.04	1	26	1	26	n	0.00	0	46	0	46	n	0.18	5	23	5	23	y	0.03	1	36	1	36	n	0.00	0	16	0	16	n	0.00	0	30	0	30	n	0.11	2	16	2	16	n	0.04	1	27	1	27	n	0.09	4	43	4	43	n	0.18	7	32	7	32	y	0.30	13	30	13	30	y	ENSMUSG00000041852.16	Tcf20	chr15	protein_coding	transcription factor 20
novel_NIR_7088	chr15	82709525	82783703	-	82741485	82783703	3pMXE	ENSMUST00000230403.2	novel	0.75	6	2	6	2	y	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.45	5	6	5	6	y	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.33	2	4	2	4	y	0.20	1	4	1	4	n	0.31	4	9	4	9	y	1.00	7	0	7	0	y	0.93	13	1	13	1	y	ENSMUSG00000041852.16	Tcf20	chr15	protein_coding	transcription factor 20
novel_NIR_7089	chr15	82783469	82785917	+	82783469;82785273	82784920;82785917	ES	ENSMUST00000186291.2	novel	1.00	5	0.0	5	0;0	y	1.00	2	0.0	2	0;0	y	1.00	2	0.0	2	0;0	y	1.00	3	0.0	3	0;0	y	1.00	6	0.0	6	0;0	y	-	-	-	-	-	-	1.00	3	0.0	3	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.92	12	1.0	12	0;2	y	0.86	3	0.5	3	0;1	y	1.00	11	0.0	11	0;0	y	ENSMUSG00000100199.2	Gm20324	chr15	lncRNA	predicted gene, 20324
novel_NIR_7090	chr15	8280548	8281644	+	8280548	8281633	A3SS	ENSMUST00000110617.2	novel	0.00	0	6	0	6	n	0.33	1	2	1	2	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.25	2	6	2	6	y	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	ENSMUSG00000039801.8	Cplane1	chr15	protein_coding	ciliogenesis and planar polarity effector 1
novel_NIR_7091	chr15	82884864	82885616	-	82883996	82885616	A3SS	ENSMUST00000231165.2	novel	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.22	2	7	2	7	y	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	ENSMUSG00000058099.17	Nfam1	chr15	protein_coding	Nfat activating molecule with ITAM motif 1
novel_NIR_7092	chr15	83050366	83054338	-	83050407	83054338	A3SS	ENSMUST00000162834.3	novel	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.55	12	10	12	10	y	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	20	0	20	n	0.00	0	11	0	11	n	ENSMUSG00000018042.19	Cyb5r3	chr15	protein_coding	cytochrome b5 reductase 3
novel_NIR_7093	chr15	83050407	83050818	-	83050407	83054338	A5SS	ENSMUST00000162834.3	novel	0.23	3	10	3	10	y	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.50	1	1	1	1	n	0.12	2	15	2	15	n	0.00	0	10	0	10	n	0.05	1	20	1	20	n	0.00	0	11	0	11	n	ENSMUSG00000018042.19	Cyb5r3	chr15	protein_coding	cytochrome b5 reductase 3
novel_NIR_7094	chr15	83050407	83050818	-	83050407	83054635	A5SS	ENSMUST00000162178.8	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000018042.19	Cyb5r3	chr15	protein_coding	cytochrome b5 reductase 3
novel_NIR_7095	chr15	83050407	83051652	-	83050407	83054338	A5SS	ENSMUST00000162834.3	novel	0.09	1	10	1	10	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	15	0	15	n	0.09	1	10	1	10	n	0.00	0	20	0	20	n	0.15	2	11	2	11	y	ENSMUSG00000018042.19	Cyb5r3	chr15	protein_coding	cytochrome b5 reductase 3
novel_NIR_7096	chr15	83050407	83051652	-	83050407	83054635	A5SS	ENSMUST00000162178.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000018042.19	Cyb5r3	chr15	protein_coding	cytochrome b5 reductase 3
novel_NIR_7097	chr15	83208354	83211806	-	83208351	83211806	A3SS	ENSMUST00000067215.9	novel	0.76	25	8	25	8	y	0.62	15	9	15	9	y	0.75	61	20	61	20	y	0.62	23	14	23	14	y	0.77	34	10	34	10	y	0.66	21	11	21	11	y	0.65	15	8	15	8	y	0.59	22	15	22	15	y	0.78	7	2	7	2	y	0.75	12	4	12	4	y	0.75	18	6	18	6	y	0.59	10	7	10	7	y	ENSMUSG00000054277.9	Arfgap3	chr15	protein_coding	ADP-ribosylation factor GTPase activating protein 3
novel_NIR_7098	chr15	8321074	8321580	-	8321074	8321621	A5SS	ENSMUST00000052965.8	novel	0.25	6	18	6	18	y	0.19	5	21	5	21	y	0.06	2	34	2	34	n	0.07	2	28	2	28	n	0.18	6	28	6	28	y	0.20	4	16	4	16	y	0.10	3	26	3	26	n	0.25	3	9	3	9	y	0.10	3	26	3	26	n	0.14	4	25	4	25	n	0.18	5	23	5	23	y	0.07	2	26	2	26	n	ENSMUSG00000022141.8	Nipbl	chr15	protein_coding	NIPBL cohesin loading factor
novel_NIR_7099	chr15	83286200	83331294	-	83286200	83307874	5pMXE	ENSMUST00000230816.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	13	0	13	0	y	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	ENSMUSG00000016664.17	Pacsin2	chr15	protein_coding	protein kinase C and casein kinase substrate in neurons 2
novel_NIR_7100	chr15	83286200	83331294	-	83286200	83316865	5pMXE	ENSMUST00000165095.9	novel	0.00	0	13	0	13	n	0.29	2	5	2	5	y	0.12	1	7	1	7	n	0.45	13	16	13	16	y	0.39	7	11	7	11	y	0.00	0	5	0	5	n	0.24	5	16	5	16	y	0.20	1	4	1	4	n	0.00	0	13	0	13	n	0.14	3	19	3	19	n	0.13	2	13	2	13	n	0.11	2	16	2	16	n	ENSMUSG00000016664.17	Pacsin2	chr15	protein_coding	protein kinase C and casein kinase substrate in neurons 2
novel_NIR_7101	chr15	83286200	83331294	-	83286200	83316953	5pMXE	ENSMUST00000231184.2	novel	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.25	1	3	1	3	n	0.87	13	2	13	2	y	0.70	7	3	7	3	y	0.00	0	3	0	3	n	0.50	5	5	5	5	y	1.00	1	0	1	0	n	0.00	0	7	0	7	n	0.21	3	11	3	11	y	0.20	2	8	2	8	y	0.50	2	2	2	2	y	ENSMUSG00000016664.17	Pacsin2	chr15	protein_coding	protein kinase C and casein kinase substrate in neurons 2
novel_NIR_7102	chr15	83286200	83331294	-	83286200	83337068	A5SS	ENSMUST00000229337.2	novel	0.00	0	2	0	2	n	0.50	2	2	2	2	y	1.00	1	0	1	0	n	1.00	13	0	13	0	y	0.88	7	1	7	1	y	0.00	0	1	0	1	n	0.56	5	4	5	4	y	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.38	3	5	3	5	y	1.00	2	0	2	0	y	0.29	2	5	2	5	y	ENSMUSG00000016664.17	Pacsin2	chr15	protein_coding	protein kinase C and casein kinase substrate in neurons 2
novel_NIR_7103	chr15	83286200	83331294	-	83286200	83348660	A5SS	ENSMUST00000171436.8	novel	0.00	0	24	0	24	n	0.12	2	14	2	14	n	0.02	1	44	1	44	n	0.17	13	63	13	63	y	0.12	7	49	7	49	n	0.00	0	22	0	22	n	0.12	5	38	5	38	n	0.05	1	21	1	21	n	0.00	0	33	0	33	n	0.06	3	51	3	51	n	0.05	2	36	2	36	n	0.04	2	49	2	49	n	ENSMUSG00000016664.17	Pacsin2	chr15	protein_coding	protein kinase C and casein kinase substrate in neurons 2
novel_NIR_7104	chr15	83286200	83332029	-	83286200	83307874	5pMXE	ENSMUST00000230816.2	novel	1.00	6	0	6	0	y	1.00	4	0	4	0	y	1.00	7	0	7	0	y	1.00	10	0	10	0	y	1.00	18	0	18	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	10	0	10	0	y	1.00	8	0	8	0	y	1.00	11	0	11	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	ENSMUSG00000016664.17	Pacsin2	chr15	protein_coding	protein kinase C and casein kinase substrate in neurons 2
novel_NIR_7105	chr15	83286200	83332029	-	83286200	83316865	5pMXE	ENSMUST00000165095.9	novel	0.32	6	13	6	13	y	0.44	4	5	4	5	y	0.50	7	7	7	7	y	0.38	10	16	10	16	y	0.62	18	11	18	11	y	0.17	1	5	1	5	n	0.16	3	16	3	16	y	0.71	10	4	10	4	y	0.38	8	13	8	13	y	0.37	11	19	11	19	y	0.00	0	13	0	13	n	0.27	6	16	6	16	y	ENSMUSG00000016664.17	Pacsin2	chr15	protein_coding	protein kinase C and casein kinase substrate in neurons 2
novel_NIR_7106	chr15	83286200	83332029	-	83286200	83316953	5pMXE	ENSMUST00000231184.2	novel	0.75	6	2	6	2	y	1.00	4	0	4	0	y	0.70	7	3	7	3	y	0.83	10	2	10	2	y	0.86	18	3	18	3	y	0.25	1	3	1	3	n	0.38	3	5	3	5	y	1.00	10	0	10	0	y	0.53	8	7	8	7	y	0.50	11	11	11	11	y	0.00	0	8	0	8	n	0.75	6	2	6	2	y	ENSMUSG00000016664.17	Pacsin2	chr15	protein_coding	protein kinase C and casein kinase substrate in neurons 2
novel_NIR_7107	chr15	83286200	83332029	-	83286200	83337068	A5SS	ENSMUST00000229337.2	novel	0.75	6	2	6	2	y	0.67	4	2	4	2	y	1.00	7	0	7	0	y	1.00	10	0	10	0	y	0.95	18	1	18	1	y	0.50	1	1	1	1	n	0.43	3	4	3	4	y	0.83	10	2	10	2	y	0.67	8	4	8	4	y	0.69	11	5	11	5	y	-	-	-	-	-	-	0.55	6	5	6	5	y	ENSMUSG00000016664.17	Pacsin2	chr15	protein_coding	protein kinase C and casein kinase substrate in neurons 2
novel_NIR_7108	chr15	83286200	83332029	-	83286200	83348660	A5SS	ENSMUST00000171436.8	novel	0.20	6	24	6	24	y	0.22	4	14	4	14	y	0.14	7	44	7	44	n	0.14	10	63	10	63	n	0.27	18	49	18	49	y	0.04	1	22	1	22	n	0.07	3	38	3	38	n	0.32	10	21	10	21	y	0.20	8	33	8	33	y	0.18	11	51	11	51	y	0.00	0	36	0	36	n	0.11	6	49	6	49	n	ENSMUSG00000016664.17	Pacsin2	chr15	protein_coding	protein kinase C and casein kinase substrate in neurons 2
novel_NIR_7109	chr15	83390528	83393854	-	83390528	83393864	A5SS	ENSMUST00000154401.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000022442.17	Ttll1	chr15	protein_coding	tubulin tyrosine ligase-like 1
novel_NIR_7110	chr15	83390528	83393854	-	83390528	83394935	A5SS	ENSMUST00000016897.12	novel	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.25	1	3	1	3	n	0.22	2	7	2	7	y	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.38	3	5	3	5	y	ENSMUSG00000022442.17	Ttll1	chr15	protein_coding	tubulin tyrosine ligase-like 1
novel_NIR_7111	chr15	83411137	83411318	+	83411137	83425496	A3SS	ENSMUST00000016902.5	novel	0.08	1	12	1	12	n	0.18	2	9	2	9	y	0.26	5	14	5	14	y	0.10	3	28	3	28	n	0.03	1	29	1	29	n	0.00	0	11	0	11	n	0.20	4	16	4	16	y	0.07	1	13	1	13	n	0.15	5	29	5	29	y	0.08	2	24	2	24	n	0.02	1	40	1	40	n	0.14	3	19	3	19	n	ENSMUSG00000016758.5	Bik	chr15	protein_coding	BCL2-interacting killer
novel_NIR_7112	chr15	83411542	83414542	+	83411542	83425496	A3SS	ENSMUST00000230912.2	novel	0.20	1	4	1	4	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.17	2	10	2	10	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.33	3	6	3	6	y	0.25	1	3	1	3	n	ENSMUSG00000016758.5	Bik	chr15	protein_coding	BCL2-interacting killer
novel_NIR_7113	chr15	83415055	83425496	+	83411137	83425496	A5SS	ENSMUST00000016902.5	novel	0.08	1	12	1	12	n	0.18	2	9	2	9	y	0.18	3	14	3	14	y	0.03	1	28	1	28	n	0.00	0	29	0	29	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.19	3	13	3	13	y	0.00	0	29	0	29	n	0.11	3	24	3	24	n	0.02	1	40	1	40	n	0.10	2	19	2	19	n	ENSMUSG00000016758.5	Bik	chr15	protein_coding	BCL2-interacting killer
novel_NIR_7114	chr15	83415055	83425496	+	83411542	83425496	A5SS	ENSMUST00000230912.2	novel	0.20	1	4	1	4	n	0.20	2	8	2	8	y	1.00	3	0	3	0	y	0.09	1	10	1	10	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	5	0	5	n	1.00	3	0	3	0	y	0.00	0	3	0	3	n	0.43	3	4	3	4	y	0.14	1	6	1	6	n	0.40	2	3	2	3	y	ENSMUSG00000016758.5	Bik	chr15	protein_coding	BCL2-interacting killer
novel_NIR_7115	chr15	83415055	83425496	+	83417860	83425496	5pMXE	ENSMUST00000229165.2	novel	0.17	1	5	1	5	n	0.67	2	1	2	1	y	1.00	3	0	3	0	y	0.17	1	5	1	5	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.60	3	2	3	2	y	0.50	1	1	1	1	n	1.00	2	0	2	0	y	ENSMUSG00000016758.5	Bik	chr15	protein_coding	BCL2-interacting killer
novel_NIR_7116	chr15	83448554	83455586	+	83448289	83455586	A5SS	ENSMUST00000208463.2	novel	0.00	0	1	0	1	n	0.12	1	7	1	7	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.33	1	2	1	2	n	0.50	2	2	2	2	y	0.00	0	7	0	7	n	0.00	0	3	0	3	n	ENSMUSG00000041736.8	Tspo	chr15	protein_coding	translocator protein
novel_NIR_7117	chr15	84084916	84086431	+	84085485	84086431	5pMXE	ENSMUST00000230668.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000022437.8	Samm50	chr15	protein_coding	SAMM50 sorting and assembly machinery component
novel_NIR_7118	chr15	84141406	84142604	+	84141406	84155432	A3SS	ENSMUST00000146020.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022438.7	Parvb	chr15	protein_coding	parvin, beta
novel_NIR_7119	chr15	85213734	85243655	+	85220781	85243655	5pMXE	ENSMUST00000163242.3	novel	0.14	12	71	12	71	n	0.11	9	70	9	70	n	0.03	5	166	5	166	n	0.08	10	112	10	112	n	0.10	20	179	20	179	n	0.05	4	83	4	83	n	0.07	9	128	9	128	n	0.00	0	97	0	97	n	0.16	15	76	15	76	y	0.13	18	116	18	116	n	0.15	18	99	18	99	y	0.21	27	103	27	103	y	ENSMUSG00000016541.11	Atxn10	chr15	protein_coding	ataxin 10
novel_NIR_7120	chr15	85620588	85620995	+	85619346	85620995	A5SS	ENSMUST00000134880.8	novel	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.18	2	9	2	9	y	0.00	0	12	0	12	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.60	3	2	3	2	y	ENSMUSG00000022383.14	Ppara	chr15	protein_coding	peroxisome proliferator activated receptor alpha
novel_NIR_7121	chr15	85620588	85620995	+	85619847	85620995	A5SS	ENSMUST00000109423.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	7	0	7	n	0.50	3	3	3	3	y	ENSMUSG00000022383.14	Ppara	chr15	protein_coding	peroxisome proliferator activated receptor alpha
novel_NIR_7122	chr15	85620588	85620995	+	85619914	85620995	A5SS	ENSMUST00000138813.8	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.25	2	6	2	6	y	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.11	1	8	1	8	n	0.00	0	6	0	6	n	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.38	3	5	3	5	y	ENSMUSG00000022383.14	Ppara	chr15	protein_coding	peroxisome proliferator activated receptor alpha
novel_NIR_7123	chr15	85625272	85661722	+	85656482	85661722	5pMXE	ENSMUST00000136453.2	novel	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.00	0	40	0	40	n	0.00	0	20	0	20	n	0.00	0	22	0	22	n	0.00	0	11	0	11	n	0.00	0	31	0	31	n	0.00	0	11	0	11	n	0.30	3	7	3	7	y	0.00	0	29	0	29	n	0.00	0	23	0	23	n	0.00	0	11	0	11	n	ENSMUSG00000022383.14	Ppara	chr15	protein_coding	peroxisome proliferator activated receptor alpha
novel_NIR_7124	chr15	85631007	85661722	+	85656482	85661722	5pMXE	ENSMUST00000136453.2	novel	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.00	0	40	0	40	n	0.00	0	20	0	20	n	0.00	0	22	0	22	n	0.00	0	11	0	11	n	0.00	0	31	0	31	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	29	0	29	n	0.00	0	23	0	23	n	0.15	2	11	2	11	y	ENSMUSG00000022383.14	Ppara	chr15	protein_coding	peroxisome proliferator activated receptor alpha
novel_NIR_7125	chr15	85660019	85661722	+	85656482	85661722	A5SS	ENSMUST00000136453.2	novel	0.11	2	17	2	17	n	0.00	0	9	0	9	n	0.07	3	40	3	40	n	0.05	1	20	1	20	n	0.04	1	22	1	22	n	0.15	2	11	2	11	y	0.00	0	31	0	31	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.12	4	29	4	29	n	0.00	0	23	0	23	n	0.00	0	11	0	11	n	ENSMUSG00000022383.14	Ppara	chr15	protein_coding	peroxisome proliferator activated receptor alpha
novel_NIR_7126	chr15	85661968	85665080	+	85661968	85671309	A3SS	ENSMUST00000109423.8	novel	0.30	34	78	34	78	y	0.36	26	46	26	46	y	0.35	44	83	44	83	y	0.15	31	181	31	181	y	0.17	32	157	32	157	y	0.24	15	47	15	47	y	0.33	53	109	53	109	y	0.27	23	61	23	61	y	0.21	25	92	25	92	y	0.17	42	208	42	208	y	0.21	34	131	34	131	y	0.19	34	144	34	144	y	ENSMUSG00000022383.14	Ppara	chr15	protein_coding	peroxisome proliferator activated receptor alpha
novel_NIR_7127	chr15	85693525	85695161	-	85693525	85695044	A5SS	ENSMUST00000134631.8	novel	0.00	0	1	0	1	n	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000064284.13	Cdpf1	chr15	protein_coding	cysteine rich, DPF motif domain containing 1
novel_NIR_7128	chr15	85693525	85695161	-	85693525	85695103	A5SS	ENSMUST00000071876.13	novel	0.00	0	10	0	10	n	0.16	3	16	3	16	y	0.00	0	37	0	37	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.00	0	20	0	20	n	0.00	0	17	0	17	n	0.00	0	18	0	18	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	22	0	22	n	0.00	0	4	0	4	n	ENSMUSG00000064284.13	Cdpf1	chr15	protein_coding	cysteine rich, DPF motif domain containing 1
novel_NIR_7129	chr15	85693525	85695161	-	85693525	85695840	A5SS	ENSMUST00000150995.8	novel	0.00	0	3	0	3	n	0.60	3	2	3	2	y	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	ENSMUSG00000064284.13	Cdpf1	chr15	protein_coding	cysteine rich, DPF motif domain containing 1
novel_NIR_7130	chr15	85750881	85751676	+	85748463	85751676	A5SS	ENSMUST00000170629.3	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000022385.12	Gtse1	chr15	protein_coding	G two S phase expressed protein 1
novel_NIR_7131	chr15	85774528	85776827	+	85774528	85776768	3pMXE	ENSMUST00000162491.8	novel	0.06	1	17	1	17	n	0.38	10	16	10	16	y	0.21	7	27	7	27	y	0.03	1	30	1	30	n	0.31	8	18	8	18	y	0.10	2	18	2	18	n	0.24	6	19	6	19	y	0.00	0	10	0	10	n	0.13	3	20	3	20	n	0.26	9	26	9	26	y	0.00	0	16	0	16	n	0.12	3	21	3	21	n	ENSMUSG00000022386.13	Trmu	chr15	protein_coding	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase
novel_NIR_7132	chr15	85774528	85776827	+	85774528	85776823	A3SS	ENSMUST00000162339.8	novel	1.00	1	0	1	0	n	1.00	10	0	10	0	y	0.70	7	3	7	3	y	1.00	1	0	1	0	n	0.57	8	6	8	6	y	0.67	2	1	2	1	y	1.00	6	0	6	0	y	0.00	0	1	0	1	n	0.60	3	2	3	2	y	0.90	9	1	9	1	y	0.00	0	4	0	4	n	0.60	3	2	3	2	y	ENSMUSG00000022386.13	Trmu	chr15	protein_coding	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase
novel_NIR_7133	chr15	85847507	85847581	-	85847507	85862803	A5SS	ENSMUST00000016172.10	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	4	0	4	0	y	1.00	9	0	9	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000016028.12	Celsr1	chr15	protein_coding	cadherin, EGF LAG seven-pass G-type receptor 1
novel_NIR_7134	chr15	86014391	86014471	+	86014391	86014458	A3SS	ENSMUST00000088931.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	17	0	17	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.20	2	8	2	8	y	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	ENSMUSG00000035900.19	Gramd4	chr15	protein_coding	GRAM domain containing 4
novel_NIR_7135	chr15	88585080	88585163	-	88585080	88591237	A5SS	ENSMUST00000109380.8	novel	0.18	2	9	2	9	y	0.13	2	13	2	13	n	0.19	3	13	3	13	n	0.00	0	13	0	13	n	0.09	2	21	2	21	n	0.22	2	7	2	7	n	0.00	0	25	0	25	n	0.17	1	5	1	5	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	19	0	19	n	0.30	6	14	6	14	y	ENSMUSG00000022387.18	Brd1	chr15	protein_coding	bromodomain containing 1
novel_NIR_7136	chr15	88585080;88585440	88585163;88591237	-	88585080	88591237	cassetteExon	ENSMUST00000109380.8	novel	0.10	1.0	9	2;0	9	n	0.07	1.0	13	2;0	13	n	0.21	3.5	13	3;4	13	y	0.00	0.0	13	0;0	13	n	0.05	1.0	21	2;0	21	n	0.22	2.0	7	2;2	7	y	0.00	0.0	25	0;0	25	n	0.09	0.5	5	1;0	5	n	0.14	1.0	6	0;2	6	n	0.00	0.0	11	0;0	11	n	0.00	0.0	19	0;0	19	n	0.18	3.0	14	6;0	14	n	ENSMUSG00000022387.18	Brd1	chr15	protein_coding	bromodomain containing 1
novel_NIR_7137	chr15	88585440	88591237	-	88585080	88591237	A3SS	ENSMUST00000109380.8	novel	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.24	4	13	4	13	n	0.00	0	13	0	13	n	0.00	0	21	0	21	n	0.22	2	7	2	7	n	0.00	0	25	0	25	n	0.00	0	5	0	5	n	0.25	2	6	2	6	y	0.00	0	11	0	11	n	0.00	0	19	0	19	n	0.00	0	14	0	14	n	ENSMUSG00000022387.18	Brd1	chr15	protein_coding	bromodomain containing 1
novel_NIR_7138	chr15	88585440	88591237	-	88585473	88591237	A3SS	ENSMUST00000109381.9	novel	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.24	4	13	4	13	y	0.00	0	14	0	14	n	0.00	0	23	0	23	n	0.22	2	7	2	7	y	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.33	2	4	2	4	y	0.00	0	25	0	25	n	0.00	0	14	0	14	n	0.00	0	18	0	18	n	ENSMUSG00000022387.18	Brd1	chr15	protein_coding	bromodomain containing 1
novel_NIR_7139	chr15	88636005	88663612	+	88636005;88639136	88638963;88663612	ES	ENSMUST00000041297.15	novel	0.00	0	4.0	0	3;5	n	0.00	0	4.0	0	1;7	n	0.00	0	2.5	0	1;4	n	0.00	0	7.0	0	5;9	n	0.00	0	10.5	0	8;13	n	0.00	0	7.5	0	4;11	n	0.00	0	6.0	0	4;8	n	0.40	2	3.0	2	2;4	y	0.00	0	4.5	0	5;4	n	0.00	0	5.5	0	8;3	n	0.00	0	2.5	0	1;4	n	0.00	0	2.5	0	3;2	n	ENSMUSG00000034333.16	Zbed4	chr15	protein_coding	zinc finger, BED type containing 4
novel_NIR_7140	chr15	88654787	88663612	+	88639136	88663612	A5SS	ENSMUST00000041297.15	novel	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.10	1	9	1	9	n	0.13	2	13	2	13	n	0.08	1	11	1	11	n	0.11	1	8	1	8	n	0.33	2	4	2	4	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000034333.16	Zbed4	chr15	protein_coding	zinc finger, BED type containing 4
novel_NIR_7141	chr15	88803882	88804006	-	88803882	88809728	A5SS	ENSMUST00000177180.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022388.15	Ttll8	chr15	protein_coding	tubulin tyrosine ligase-like family, member 8
novel_NIR_7142	chr15	88960861	88965183	+	88959417	88965183	A5SS	ENSMUST00000168863.8	novel	1.00	6	0	6	0	y	-	-	-	-	-	-	0.85	11	2	11	2	y	1.00	1	0	1	0	n	1.00	14	0	14	0	y	1.00	13	0	13	0	y	0.83	5	1	5	1	y	1.00	4	0	4	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	10	0	10	0	y	1.00	7	0	7	0	y	ENSMUSG00000015363.14	Trabd	chr15	protein_coding	TraB domain containing
novel_NIR_7143	chr15	88962063	88965183	+	88959417	88965183	A5SS	ENSMUST00000168863.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000015363.14	Trabd	chr15	protein_coding	TraB domain containing
novel_NIR_7144	chr15	89008456	89008916	-	89008456;89008791	89008735;89008916	ES	ENSMUST00000129398.8	novel	0.00	0	22.5	0	14;31	n	0.18	4	18.0	4	16;20	y	0.00	0	24.0	0	25;23	n	0.00	0	14.5	0	15;14	n	0.00	0	30.5	0	33;28	n	0.00	0	11.5	0	11;12	n	0.00	0	22.0	0	15;29	n	0.00	0	12.5	0	5;20	n	0.09	2	19.5	2	14;25	n	0.03	1	29.0	1	25;33	n	0.00	0	30.5	0	25;36	n	0.05	1	19.5	1	17;22	n	ENSMUSG00000062906.13	Hdac10	chr15	protein_coding	histone deacetylase 10
novel_NIR_7145	chr15	89008456	89008916	-	89008791	89008916	A3SS	ENSMUST00000143465.8	novel	0.00	0	31	0	31	n	0.17	4	20	4	20	y	0.00	0	23	0	23	n	0.00	0	14	0	14	n	0.00	0	28	0	28	n	0.00	0	12	0	12	n	0.00	0	29	0	29	n	0.00	0	20	0	20	n	0.07	2	25	2	25	n	0.03	1	33	1	33	n	0.00	0	36	0	36	n	0.04	1	22	1	22	n	ENSMUSG00000062906.13	Hdac10	chr15	protein_coding	histone deacetylase 10
novel_NIR_7146	chr15	89008459	89008735	-	89008456	89008735	A3SS	ENSMUST00000129398.8	novel	0.22	4	14	4	14	y	0.16	3	16	3	16	y	0.00	0	25	0	25	n	0.00	0	15	0	15	n	0.08	3	33	3	33	n	0.15	2	11	2	11	y	0.06	1	15	1	15	n	0.38	3	5	3	5	y	0.18	3	14	3	14	y	0.07	2	25	2	25	n	0.11	3	25	3	25	n	0.19	4	17	4	17	y	ENSMUSG00000062906.13	Hdac10	chr15	protein_coding	histone deacetylase 10
novel_NIR_7147	chr15	89008459	89008735	-	89008631	89008735	A3SS	ENSMUST00000138245.2	novel	1.00	4	0	4	0	y	1.00	3	0	3	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	0.50	1	1	1	1	n	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	0.50	3	3	3	3	y	1.00	4	0	4	0	y	ENSMUSG00000062906.13	Hdac10	chr15	protein_coding	histone deacetylase 10
novel_NIR_7148	chr15	89010640	89010766	-	89010640	89010833	A5SS	ENSMUST00000129398.8	novel	0.50	1	1	1	1	n	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	ENSMUSG00000062906.13	Hdac10	chr15	protein_coding	histone deacetylase 10
novel_NIR_7149	chr15	89040377	89040459	-	89040380	89040459	A3SS	ENSMUST00000143014.3	novel	0.45	39	48	39	48	y	0.39	28	44	28	44	y	0.36	23	41	23	41	y	0.41	26	37	26	37	y	0.37	42	72	42	72	y	0.45	14	17	14	17	y	0.39	45	71	45	71	y	0.42	22	30	22	30	y	0.47	29	33	29	33	y	0.36	34	61	34	61	y	0.32	25	54	25	54	y	0.25	18	53	18	53	y	ENSMUSG00000036606.18	Plxnb2	chr15	protein_coding	plexin B2
novel_NIR_7150	chr15	89054820	89064868	-	89054820;89055319	89055270;89064868	ES	ENSMUST00000109331.9	novel	0.07	4	55.5	4	69;42	n	0.13	4	27.0	4	37;17	n	0.18	14	62.0	14	72;52	y	0.02	2	88.0	2	103;73	n	0.11	17	134.5	17	164;105	n	0.02	1	57.5	1	65;50	n	0.04	4	87.5	4	96;79	n	0.10	8	74.5	8	86;63	n	0.15	8	46.0	8	53;39	y	0.23	27	90.0	27	106;74	y	0.11	8	62.0	8	76;48	n	0.14	13	81.0	13	109;53	n	ENSMUSG00000036606.18	Plxnb2	chr15	protein_coding	plexin B2
novel_NIR_7151	chr15	89070455	89070566	-	89070464	89070566	A3SS	ENSMUST00000078953.9	novel	0.12	2	15	2	15	n	0.11	2	16	2	16	n	0.50	5	5	5	5	y	0.00	0	19	0	19	n	0.08	1	11	1	11	n	0.00	0	4	0	4	n	0.00	0	29	0	29	n	0.17	1	5	1	5	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.07	2	28	2	28	n	0.11	1	8	1	8	n	ENSMUSG00000015377.11	Dennd6b	chr15	protein_coding	DENN/MADD domain containing 6B
novel_NIR_7152	chr15	89073082	89073375	-	89073082	89073640	A5SS	ENSMUST00000078953.9	novel	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.00	0	4	0	4	n	0.06	1	16	1	16	n	0.00	0	7	0	7	n	0.12	1	7	1	7	n	0.00	0	11	0	11	n	0.20	2	8	2	8	y	0.00	0	8	0	8	n	ENSMUSG00000015377.11	Dennd6b	chr15	protein_coding	DENN/MADD domain containing 6B
novel_NIR_7153	chr15	89073082	89074444	-	89073082;89073720	89073640;89074444	ES	ENSMUST00000078953.9	novel	0.00	0	16.5	0	16;17	n	0.00	0	13.5	0	13;14	n	0.09	1	10.5	1	12;9	n	0.00	0	11.5	0	11;12	n	0.05	1	18.5	1	16;21	n	0.11	1	8.0	1	4;12	n	0.00	0	19.5	0	16;23	n	0.25	2	6.0	2	7;5	y	0.10	1	9.5	1	7;12	n	0.08	1	12.0	1	11;13	n	0.00	0	13.0	0	8;18	n	0.00	0	16.0	0	8;24	n	ENSMUSG00000015377.11	Dennd6b	chr15	protein_coding	DENN/MADD domain containing 6B
novel_NIR_7154	chr15	89075114	89075193	-	89075119	89075193	A3SS	ENSMUST00000078953.9	novel	0.18	2	9	2	9	y	0.00	0	13	0	13	n	0.00	0	20	0	20	n	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.00	0	14	0	14	n	0.00	0	28	0	28	n	0.00	0	8	0	8	n	0.00	0	15	0	15	n	0.00	0	19	0	19	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	ENSMUSG00000015377.11	Dennd6b	chr15	protein_coding	DENN/MADD domain containing 6B
novel_NIR_7155	chr15	89137453	89140866	+	89137453	89140912	A3SS	ENSMUST00000226221.2	novel	0.50	3	3	3	3	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.78	7	2	7	2	y	0.00	0	6	0	6	n	0.56	5	4	5	4	y	1.00	2	0	2	0	y	-	-	-	-	-	-	0.67	4	2	4	2	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.33	1	2	1	2	n	ENSMUSG00000036561.10	Ppp6r2	chr15	protein_coding	protein phosphatase 6, regulatory subunit 2
novel_NIR_7156	chr15	89137453	89140866	+	89137464	89140866	A5SS	ENSMUST00000226779.2	novel	0.16	3	16	3	16	y	0.00	0	13	0	13	n	0.04	1	27	1	27	n	0.16	7	37	7	37	y	0.00	0	30	0	30	n	0.25	5	15	5	15	y	0.04	2	45	2	45	n	0.00	0	31	0	31	n	0.18	4	18	4	18	y	0.00	0	40	0	40	n	0.00	0	26	0	26	n	0.03	1	32	1	32	n	ENSMUSG00000036561.10	Ppp6r2	chr15	protein_coding	protein phosphatase 6, regulatory subunit 2
novel_NIR_7157	chr15	89137464	89140912	+	89137453	89140912	A5SS	ENSMUST00000226221.2	novel	0.00	0	3	0	3	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.54	7	6	7	6	y	0.33	2	4	2	4	y	1.00	5	0	5	0	y	1.00	6	0	6	0	y	0.00	0	2	0	2	n	0.67	8	4	8	4	y	0.17	1	5	1	5	n	0.80	8	2	8	2	y	ENSMUSG00000036561.10	Ppp6r2	chr15	protein_coding	protein phosphatase 6, regulatory subunit 2
novel_NIR_7158	chr15	89137464	89140912	+	89137464	89140866	A3SS	ENSMUST00000226779.2	novel	0.00	0	16	0	16	n	0.13	2	13	2	13	n	0.10	3	27	3	27	n	0.00	0	37	0	37	n	0.19	7	30	7	30	y	0.12	2	15	2	15	n	0.10	5	45	5	45	n	0.16	6	31	6	31	y	0.00	0	18	0	18	n	0.17	8	40	8	40	y	0.04	1	26	1	26	n	0.20	8	32	8	32	y	ENSMUSG00000036561.10	Ppp6r2	chr15	protein_coding	protein phosphatase 6, regulatory subunit 2
novel_NIR_7159	chr15	89146705	89149332	+	89146621	89149332	A5SS	ENSMUST00000238818.2	novel	0.38	8	13	8	13	y	0.08	1	11	1	11	n	0.12	3	21	3	21	n	0.29	8	20	8	20	y	0.10	4	36	4	36	n	0.18	4	18	4	18	y	0.13	4	26	4	26	n	0.27	4	11	4	11	y	0.06	1	15	1	15	n	0.21	9	34	9	34	y	0.00	0	23	0	23	n	0.24	13	42	13	42	y	ENSMUSG00000036561.10	Ppp6r2	chr15	protein_coding	protein phosphatase 6, regulatory subunit 2
novel_NIR_7160	chr15	89238500	89238767	-	89238500	89238659	A5SS	ENSMUST00000230112.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000022614.9	Lmf2	chr15	protein_coding	lipase maturation factor 2
novel_NIR_7161	chr15	89258616	89259199	-	89258616;89259078	89258960;89259199	ES	ENSMUST00000023285.5	novel	0.08	4	46.0	4	30;62	n	0.20	11	44.0	11	31;57	y	0.05	3	53.5	3	40;67	n	0.07	5	70.5	5	62;79	n	0.07	7	97.5	7	77;118	n	0.07	4	55.0	4	42;68	n	0.11	16	123.5	16	96;151	n	0.05	4	75.0	4	40;110	n	0.04	3	67.5	3	60;75	n	0.08	9	104.0	9	74;134	n	0.10	11	96.0	11	78;114	n	0.01	1	71.0	1	49;93	n	ENSMUSG00000022615.8	Tymp	chr15	protein_coding	thymidine phosphorylase
novel_NIR_7162	chr15	89259310	89260442	-	89259803	89260442	A3SS&ES	ENSMUST00000023285.5	novel	0.00	0	26	0	26	n	0.00	0	25	0	25	n	0.27	6	16	6	16	y	0.00	0	22	0	22	n	0.00	0	63	0	63	n	0.00	0	17	0	17	n	0.00	0	77	0	77	n	0.00	0	38	0	38	n	0.00	0	34	0	34	n	0.00	0	52	0	52	n	0.00	0	32	0	32	n	0.00	0	38	0	38	n	ENSMUSG00000022615.8	Tymp	chr15	protein_coding	thymidine phosphorylase
novel_NIR_7163	chr15	89259803	89260487	-	89259803	89260442	A5SS	ENSMUST00000023285.5	novel	0.04	1	26	1	26	n	0.04	1	25	1	25	n	0.24	5	16	5	16	y	0.29	9	22	9	22	y	0.10	7	63	7	63	n	0.15	3	17	3	17	y	0.13	12	77	12	77	n	0.10	4	38	4	38	n	0.03	1	34	1	34	n	0.09	5	52	5	52	n	0.18	7	32	7	32	y	0.00	0	38	0	38	n	ENSMUSG00000022615.8	Tymp	chr15	protein_coding	thymidine phosphorylase
novel_NIR_7164	chr15	89260960	89261211	-	89260960	89261188	A5SS	ENSMUST00000023285.5	novel	0.71	10	4	10	4	y	0.54	13	11	13	11	y	0.36	5	9	5	9	y	0.62	23	14	23	14	y	0.54	27	23	27	23	y	0.65	11	6	11	6	y	0.60	35	23	35	23	y	0.73	33	12	33	12	y	0.74	29	10	29	10	y	0.69	36	16	36	16	y	0.74	35	12	35	12	y	0.61	23	15	23	15	y	ENSMUSG00000022615.8	Tymp	chr15	protein_coding	thymidine phosphorylase
novel_NIR_7165	chr15	89260960	89261935	-	89260960	89261188	5pMXE	ENSMUST00000023285.5	novel	0.00	0	4	0	4	n	0.15	2	11	2	11	y	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	23	0	23	n	0.00	0	6	0	6	n	0.04	1	23	1	23	n	0.08	1	12	1	12	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	ENSMUSG00000022615.8	Tymp	chr15	protein_coding	thymidine phosphorylase
novel_NIR_7166	chr15	89262075	89262538	-	89262075;89262424	89262303;89262538	ES	ENSMUST00000049968.9	novel	0.12	3	21.5	3	18;25	n	0.15	3	17.5	3	18;17	y	0.40	12	18.0	12	17;19	y	0.00	0	23.5	0	9;38	n	0.10	3	28.0	3	26;30	n	0.15	3	17.5	3	14;21	y	0.11	4	34.0	4	33;35	n	0.28	7	18.0	7	14;22	y	0.11	2	15.5	2	14;17	n	0.12	5	35.5	5	41;30	n	0.07	3	39.0	3	37;41	n	0.04	1	21.5	1	25;18	n	ENSMUSG00000047394.10	Odf3b	chr15	protein_coding	outer dense fiber of sperm tails 3B
novel_NIR_7167	chr15	89262638	89262849	-	89262642	89262849	A3SS	ENSMUST00000049968.9	novel	0.07	1	13	1	13	n	0.00	0	12	0	12	n	0.29	4	10	4	10	y	0.07	1	13	1	13	n	0.29	5	12	5	12	y	0.00	0	3	0	3	n	0.04	1	25	1	25	n	0.07	1	13	1	13	n	0.00	0	10	0	10	n	0.00	0	24	0	24	n	0.00	0	21	0	21	n	0.00	0	11	0	11	n	ENSMUSG00000047394.10	Odf3b	chr15	protein_coding	outer dense fiber of sperm tails 3B
novel_NIR_7168	chr15	89262642	89263147	-	89262642;89263052	89262849;89263147	ES	ENSMUST00000228005.2	novel	0.00	0	7.5	0	13;2	n	0.24	2	6.5	2	12;1	y	0.00	0	6.0	0	10;2	n	0.00	0	6.5	0	13;0	n	0.00	0	7.5	0	12;3	n	0.00	0	2.0	0	3;1	n	0.00	0	14.0	0	25;3	n	0.00	0	6.5	0	13;0	n	0.00	0	6.5	0	10;3	n	0.00	0	14.0	0	24;4	n	0.00	0	10.5	0	21;0	n	0.00	0	6.0	0	11;1	n	ENSMUSG00000047394.10	Odf3b	chr15	protein_coding	outer dense fiber of sperm tails 3B
novel_NIR_7169	chr15	89274642	89281182	-	89274642	89281529	A5SS	ENSMUST00000109314.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000078938.10	Syce3	chr15	protein_coding	synaptonemal complex central element protein 3
novel_NIR_7170	chr15	89312761	89312917	-	89312747	89312917	A3SS	ENSMUST00000023289.13	novel	0.11	3	25	3	25	n	0.00	0	24	0	24	n	0.07	2	25	2	25	n	0.00	0	27	0	27	n	0.12	5	35	5	35	n	0.20	4	16	4	16	y	0.04	2	55	2	55	n	0.05	1	19	1	19	n	0.03	1	36	1	36	n	0.09	6	60	6	60	n	0.07	2	27	2	27	n	0.00	0	36	0	36	n	ENSMUSG00000022617.16	Chkb	chr15	protein_coding	choline kinase beta
novel_NIR_7171	chr15	89312761	89312917	-	89312781	89312917	A3SS	ENSMUST00000166267.2	novel	0.21	3	11	3	11	y	0.00	0	3	0	3	n	0.20	2	8	2	8	y	0.00	0	2	0	2	n	0.28	5	13	5	13	y	0.40	4	6	4	6	y	0.15	2	11	2	11	y	0.14	1	6	1	6	n	0.08	1	11	1	11	n	0.29	6	15	6	15	y	0.17	2	10	2	10	y	0.00	0	12	0	12	n	ENSMUSG00000022617.16	Chkb	chr15	protein_coding	choline kinase beta
novel_NIR_7172	chr15	90527913	90532781	-	90503938	90532781	A3SS	ENSMUST00000088649.11	novel	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.10	6	56	6	56	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.19	3	13	3	13	y	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.00	0	17	0	17	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	ENSMUSG00000052560.16	Cpne8	chr15	protein_coding	copine VIII
novel_NIR_7173	chr15	9073796	9083350	+	9075469	9083350	5pMXE	ENSMUST00000228397.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	17	0	17	n	0.00	0	7	0	7	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	10	0	10	n	-	-	-	-	-	-	ENSMUSG00000022253.18	Nadk2	chr15	protein_coding	NAD kinase 2, mitochondrial
novel_NIR_7174	chr15	9075240	9083350	+	9075469	9083350	5pMXE	ENSMUST00000228397.3	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	17	0	17	n	0.00	0	7	0	7	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	10	0	10	n	-	-	-	-	-	-	ENSMUSG00000022253.18	Nadk2	chr15	protein_coding	NAD kinase 2, mitochondrial
novel_NIR_7175	chr15	9075469	9082562	+	9075469	9083350	A3SS	ENSMUST00000228397.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	17	0	17	n	0.00	0	7	0	7	n	1.00	2	0	2	0	n	-	-	-	-	-	-	0.18	2	9	2	9	y	-	-	-	-	-	-	0.00	0	10	0	10	n	1.00	2	0	2	0	y	ENSMUSG00000022253.18	Nadk2	chr15	protein_coding	NAD kinase 2, mitochondrial
novel_NIR_7176	chr15	9082649	9083350	+	9075469	9083350	A5SS	ENSMUST00000228397.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.19	4	17	4	17	n	0.00	0	7	0	7	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	9	0	9	n	1.00	1	0	1	0	n	0.17	2	10	2	10	y	-	-	-	-	-	-	ENSMUSG00000022253.18	Nadk2	chr15	protein_coding	NAD kinase 2, mitochondrial
novel_NIR_7177	chr15	90828104	90836914	-	90828104	90832527	A5SS&ES	ENSMUST00000067205.16	novel	0.96	27	1	27	1	y	1.00	18	0	18	0	y	0.98	82	2	82	2	y	1.00	33	0	33	0	y	0.93	51	4	51	4	n	1.00	38	0	38	0	y	0.93	26	2	26	2	y	0.91	29	3	29	3	y	1.00	30	0	30	0	y	1.00	27	0	27	0	y	0.94	17	1	17	1	y	0.93	43	3	43	3	y	ENSMUSG00000022629.18	Kif21a	chr15	protein_coding	kinesin family member 21A
novel_NIR_7178	chr15	90828104	90836914	-	90828104	90833209	A5SS&ES	ENSMUST00000109288.9	novel	1.00	27	0	27	0	y	1.00	18	0	18	0	y	0.95	82	4	82	4	y	0.97	33	1	33	1	y	0.94	51	3	51	3	n	0.97	38	1	38	1	y	0.93	26	2	26	2	y	1.00	29	0	29	0	y	1.00	30	0	30	0	y	1.00	27	0	27	0	y	1.00	17	0	17	0	y	0.98	43	1	43	1	y	ENSMUSG00000022629.18	Kif21a	chr15	protein_coding	kinesin family member 21A
novel_NIR_7179	chr15	90828104	90836914	-	90828104	90835449	5pMXE	ENSMUST00000230487.2	novel	0.59	27	19	27	19	y	0.67	18	9	18	9	y	0.50	82	81	82	81	y	0.65	33	18	33	18	y	0.69	51	23	51	23	y	0.49	38	40	38	40	y	0.57	26	20	26	20	y	0.53	29	26	29	26	y	0.67	30	15	30	15	y	0.61	27	17	27	17	y	0.52	17	16	17	16	y	0.69	43	19	43	19	y	ENSMUSG00000022629.18	Kif21a	chr15	protein_coding	kinesin family member 21A
novel_NIR_7180	chr15	90828104	90836914	-	90828104	90840498	A5SS	ENSMUST00000109287.4	novel	0.82	27	6	27	6	y	0.86	18	3	18	3	y	0.90	82	9	82	9	y	0.77	33	10	33	10	y	0.84	51	10	51	10	n	0.83	38	8	38	8	y	0.81	26	6	26	6	y	0.91	29	3	29	3	y	0.88	30	4	30	4	y	0.82	27	6	27	6	y	0.63	17	10	17	10	y	0.96	43	2	43	2	y	ENSMUSG00000022629.18	Kif21a	chr15	protein_coding	kinesin family member 21A
novel_NIR_7181	chr15	90837021	90838527	-	90837021	90840498	A5SS	ENSMUST00000100304.11	novel	0.21	6	22	6	22	y	0.18	5	23	5	23	y	0.27	34	94	34	94	y	0.12	6	45	6	45	n	0.33	19	39	19	39	y	0.32	18	39	18	39	y	0.37	17	29	17	29	y	0.29	12	29	12	29	y	0.11	5	42	5	42	n	0.19	8	35	8	35	y	0.30	6	14	6	14	y	0.12	5	38	5	38	n	ENSMUSG00000022629.18	Kif21a	chr15	protein_coding	kinesin family member 21A
novel_NIR_7182	chr15	90839602	90840498	-	90828104	90840498	A3SS	ENSMUST00000109287.4	novel	0.14	1	6	1	6	n	0.40	2	3	2	3	y	0.40	6	9	6	9	y	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.11	1	8	1	8	n	0.14	1	6	1	6	n	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.33	1	2	1	2	n	ENSMUSG00000022629.18	Kif21a	chr15	protein_coding	kinesin family member 21A
novel_NIR_7183	chr15	90839602	90840498	-	90833247	90840498	A3SS	ENSMUST00000109288.9	novel	1.00	1	0	1	0	n	0.67	2	1	2	1	y	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000022629.18	Kif21a	chr15	protein_coding	kinesin family member 21A
novel_NIR_7184	chr15	90839602	90840498	-	90835577	90840498	A3SS	ENSMUST00000067205.16	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.50	6	6	6	6	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.25	1	3	1	3	n	ENSMUSG00000022629.18	Kif21a	chr15	protein_coding	kinesin family member 21A
novel_NIR_7185	chr15	9100290	9103089	+	9100290	9103414	A3SS	ENSMUST00000189211.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022253.18	Nadk2	chr15	protein_coding	NAD kinase 2, mitochondrial
novel_NIR_7186	chr15	91067005	91073041	-	91067005	91073038	A5SS	ENSMUST00000069511.8	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.21	4	15	4	15	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.09	1	10	1	10	n	0.14	1	6	1	6	n	0.03	1	31	1	31	n	ENSMUSG00000055782.10	Abcd2	chr15	protein_coding	ATP-binding cassette, sub-family D (ALD), member 2
novel_NIR_7187	chr15	9140819	9149063	+	9140827	9149063	A5SS	ENSMUST00000227556.3	novel	0.00	0	6	0	6	n	0.25	2	6	2	6	y	0.11	3	24	3	24	n	0.09	2	20	2	20	n	0.15	6	33	6	33	y	0.13	3	20	3	20	n	0.26	5	14	5	14	y	0.19	5	21	5	21	y	0.09	2	20	2	20	n	0.20	3	12	3	12	y	0.10	1	9	1	9	n	0.20	4	16	4	16	y	ENSMUSG00000039704.9	Lmbrd2	chr15	protein_coding	LMBR1 domain containing 2
novel_NIR_7188	chr15	9177844	9178386	+	9177844	9178349	A3SS	ENSMUST00000227556.3	novel	0.00	0	19	0	19	n	0.12	2	14	2	14	n	0.00	0	26	0	26	n	0.00	0	21	0	21	n	0.15	4	23	4	23	y	0.10	2	18	2	18	n	0.00	0	31	0	31	n	0.00	0	33	0	33	n	0.00	0	20	0	20	n	0.00	0	33	0	33	n	0.11	2	16	2	16	n	0.00	0	37	0	37	n	ENSMUSG00000039704.9	Lmbrd2	chr15	protein_coding	LMBR1 domain containing 2
novel_NIR_7189	chr15	9280133	9306161	+	9280133;9284101	9283948;9306161	ES	ENSMUST00000145326.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1.0	0	2;0	n	0.40	1	1.5	1	1;2	n	-	-	-	-	-	-	0.00	0	1.5	0	3;0	n	0.80	2	0.5	2	1;0	y	ENSMUSG00000072664.12	Ugt3a1	chr15	protein_coding	UDP glycosyltransferases 3 family, polypeptide A1
novel_NIR_7190	chr15	9284101	9292062	+	9284101	9306161	A3SS	ENSMUST00000145326.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000072664.12	Ugt3a1	chr15	protein_coding	UDP glycosyltransferases 3 family, polypeptide A1
novel_NIR_7191	chr15	9305162	9306161	+	9284101	9306161	A5SS	ENSMUST00000145326.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000072664.12	Ugt3a1	chr15	protein_coding	UDP glycosyltransferases 3 family, polypeptide A1
novel_NIR_7192	chr15	9306799	9310563	+	9306695	9310563	A5SS	ENSMUST00000175695.9	novel	0.00	0	128	0	128	n	0.02	3	136	3	136	n	0.88	345	45	345	45	y	0.02	4	207	4	207	n	0.15	18	103	18	103	y	0.89	340	43	340	43	y	0.28	66	169	66	169	y	0.75	221	75	221	75	y	0.00	0	138	0	138	n	0.00	0	327	0	327	n	0.00	0	179	0	179	n	0.01	2	145	2	145	n	ENSMUSG00000072664.12	Ugt3a1	chr15	protein_coding	UDP glycosyltransferases 3 family, polypeptide A1
novel_NIR_7193	chr15	93296342	93297108	+	93296342	93308553	A3SS	ENSMUST00000229071.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	1	0	1	0	n	ENSMUSG00000036167.17	Pphln1	chr15	protein_coding	periphilin 1
novel_NIR_7194	chr15	93296342	93297108	+	93296342	93308573	A3SS	ENSMUST00000109256.11	novel	0.08	1	11	1	11	n	0.33	1	2	1	2	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.17	2	10	2	10	y	0.00	0	7	0	7	n	0.08	1	11	1	11	n	0.07	1	13	1	13	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.33	5	10	5	10	y	0.11	1	8	1	8	n	ENSMUSG00000036167.17	Pphln1	chr15	protein_coding	periphilin 1
novel_NIR_7195	chr15	9335874	9351186	+	9335874;9338830	9338732;9351186	ES	ENSMUST00000072403.7	novel	0.15	70	390.5	70	357;424	y	0.12	36	264.5	36	246;283	n	0.22	68	241.0	68	231;251	y	0.09	65	632.0	65	581;683	n	0.15	108	604.0	108	554;654	y	0.20	52	210.0	52	190;230	y	0.15	85	481.5	85	439;524	y	0.19	85	370.0	85	324;416	y	0.08	42	477.5	42	453;502	n	0.11	79	632.5	79	581;684	n	0.13	57	382.0	57	353;411	n	0.09	57	568.0	57	513;623	n	ENSMUSG00000049152.12	Ugt3a2	chr15	protein_coding	UDP glycosyltransferases 3 family, polypeptide A2
novel_NIR_7196	chr15	96248007	96250548	+	96248007	96249706	3pMXE	ENSMUST00000134985.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000033237.20	Arid2	chr15	protein_coding	AT rich interactive domain 2 (ARID, RFX-like)
novel_NIR_7197	chr15	96248007	96250548	+	96248007	96254574	A3SS	ENSMUST00000096250.5	novel	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.10	1	9	1	9	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.33	2	4	2	4	y	ENSMUSG00000033237.20	Arid2	chr15	protein_coding	AT rich interactive domain 2 (ARID, RFX-like)
novel_NIR_7198	chr15	96251065	96254574	+	96248007	96254574	A5SS	ENSMUST00000096250.5	novel	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.27	3	8	3	8	y	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	ENSMUSG00000033237.20	Arid2	chr15	protein_coding	AT rich interactive domain 2 (ARID, RFX-like)
novel_NIR_7199	chr15	96917742	96925537	-	96917742	96953736	A5SS	ENSMUST00000023101.10	novel	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	28	0	28	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.17	2	10	2	10	y	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.29	2	5	2	5	y	ENSMUSG00000022464.15	Slc38a4	chr15	protein_coding	solute carrier family 38, member 4
novel_NIR_7200	chr15	96917742	96926508	-	96917742	96953736	A5SS	ENSMUST00000023101.10	novel	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	28	0	28	n	0.00	0	6	0	6	n	0.12	2	14	2	14	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.11	1	8	1	8	n	0.33	1	2	1	2	n	0.00	0	7	0	7	n	0.33	1	2	1	2	n	0.38	3	5	3	5	y	ENSMUSG00000022464.15	Slc38a4	chr15	protein_coding	solute carrier family 38, member 4
novel_NIR_7201	chr15	96917742	96926976	-	96917742	96953736	A5SS	ENSMUST00000023101.10	novel	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	28	0	28	n	0.00	0	6	0	6	n	0.18	3	14	3	14	y	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000022464.15	Slc38a4	chr15	protein_coding	solute carrier family 38, member 4
novel_NIR_7202	chr15	96917742	96927257	-	96917742	96953736	A5SS	ENSMUST00000023101.10	novel	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	28	0	28	n	0.00	0	6	0	6	n	0.07	1	14	1	14	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.11	1	8	1	8	n	0.50	2	2	2	2	y	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.17	1	5	1	5	n	ENSMUSG00000022464.15	Slc38a4	chr15	protein_coding	solute carrier family 38, member 4
novel_NIR_7203	chr15	96917742	96933576	-	96917742	96953736	A5SS	ENSMUST00000023101.10	novel	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	28	0	28	n	0.14	1	6	1	6	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.29	2	5	2	5	y	ENSMUSG00000022464.15	Slc38a4	chr15	protein_coding	solute carrier family 38, member 4
novel_NIR_7204	chr15	96917835	96918184	-	96917742	96918184	A3SS	ENSMUST00000166223.2	novel	0.08	9	107	9	107	n	0.18	10	45	10	45	y	0.11	17	132	17	132	n	0.08	14	151	14	151	n	0.10	15	142	15	142	n	0.14	7	44	7	44	n	0.09	11	106	11	106	n	0.14	13	77	13	77	n	0.07	4	52	4	52	n	0.09	9	94	9	94	n	0.08	4	47	4	47	n	0.08	7	80	7	80	n	ENSMUSG00000022464.15	Slc38a4	chr15	protein_coding	solute carrier family 38, member 4
novel_NIR_7205	chr15	97144478	97144854	-	97144478	97144822	A5SS	ENSMUST00000053106.7	novel	0.45	5	6	5	6	y	1.00	8	0	8	0	y	0.67	2	1	2	1	y	0.44	4	5	4	5	y	0.33	2	4	2	4	y	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.67	2	1	2	1	y	1.00	3	0	3	0	y	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.75	3	1	3	1	y	ENSMUSG00000048218.7	Amigo2	chr15	protein_coding	adhesion molecule with Ig like domain 2
novel_NIR_7206	chr15	97145390	97175215	+	97145045	97175215	A5SS	ENSMUST00000059433.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000044250.9	Pced1b	chr15	protein_coding	PC-esterase domain containing 1B
novel_NIR_7207	chr15	97145390	97175215	+	97146958	97175215	5pMXE	ENSMUST00000226615.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000044250.9	Pced1b	chr15	protein_coding	PC-esterase domain containing 1B
novel_NIR_7208	chr15	97272030	97281906	+	97259216	97281906	A5SS	ENSMUST00000228521.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.25	1	3	1	3	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	ENSMUSG00000044250.9	Pced1b	chr15	protein_coding	PC-esterase domain containing 1B
novel_NIR_7209	chr15	97272030	97281906	+	97272030	97281909	A3SS	ENSMUST00000059433.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	ENSMUSG00000044250.9	Pced1b	chr15	protein_coding	PC-esterase domain containing 1B
novel_NIR_7210	chr15	97601250	97603656	-	97601250	97603631	A5SS	ENSMUST00000023104.7	novel	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.00	0	21	0	21	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.22	2	7	2	7	y	0.00	0	18	0	18	n	0.00	0	20	0	20	n	0.00	0	21	0	21	n	ENSMUSG00000022466.7	Rpap3	chr15	protein_coding	RNA polymerase II associated protein 3
novel_NIR_7211	chr15	97682497	97687831	+	97682497	97684683	A3SS&ES	ENSMUST00000135073.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000081534.4	Slc48a1	chr15	protein_coding	solute carrier family 48 (heme transporter), member 1
novel_NIR_7212	chr15	97682497	97687831	+	97682497	97688468	A3SS	ENSMUST00000229084.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000081534.4	Slc48a1	chr15	protein_coding	solute carrier family 48 (heme transporter), member 1
novel_NIR_7213	chr15	97979179	97980124	-	97974590	97980124	A3SS	ENSMUST00000044189.16	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.33	3	6	3	6	y	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	ENSMUSG00000033075.18	Senp1	chr15	protein_coding	SUMO1/sentrin specific peptidase 1
novel_NIR_7214	chr15	97979179	97980124	-	97974923	97980124	A3SS	ENSMUST00000180716.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033075.18	Senp1	chr15	protein_coding	SUMO1/sentrin specific peptidase 1
novel_NIR_7215	chr15	97993091	97993292	+	97993091	98010035	A3SS	ENSMUST00000229344.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033065.15	Pfkm	chr15	protein_coding	phosphofructokinase, muscle
novel_NIR_7216	chr15	97993091	97993422	+	97993091	98010035	A3SS	ENSMUST00000229344.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033065.15	Pfkm	chr15	protein_coding	phosphofructokinase, muscle
novel_NIR_7217	chr15	98040691	98043069	-	98040691	98043482	A5SS	ENSMUST00000059112.12	novel	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.17	2	10	2	10	y	0.00	0	15	0	15	n	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.00	0	23	0	23	n	0.00	0	17	0	17	n	0.00	0	8	0	8	n	0.17	2	10	2	10	y	0.00	0	6	0	6	n	0.00	0	9	0	9	n	ENSMUSG00000048175.14	Asb8	chr15	protein_coding	ankyrin repeat and SOCS box-containing 8
novel_NIR_7218	chr15	98040695	98043069	-	98040695	98062620	A5SS	ENSMUST00000123922.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000048175.14	Asb8	chr15	protein_coding	ankyrin repeat and SOCS box-containing 8
novel_NIR_7219	chr15	98040695	98043069	-	98040695	98063352	A5SS	ENSMUST00000143400.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000048175.14	Asb8	chr15	protein_coding	ankyrin repeat and SOCS box-containing 8
novel_NIR_7220	chr15	98191709	98191842	-	98191709	98193936	A5SS	ENSMUST00000169721.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000022987.13	Zfp641	chr15	protein_coding	zinc finger protein 641
novel_NIR_7221	chr15	98192905	98193936	-	98191709	98193936	A3SS	ENSMUST00000169721.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022987.13	Zfp641	chr15	protein_coding	zinc finger protein 641
novel_NIR_7222	chr15	98418306	98419517	-	98418306	98422340	A5SS	ENSMUST00000230542.2	novel	0.03	1	32	1	32	n	0.15	9	50	9	50	n	0.06	4	68	4	68	n	0.16	8	41	8	41	y	0.17	10	49	10	49	n	0.08	2	24	2	24	n	0.11	9	76	9	76	n	0.13	4	26	4	26	n	0.02	1	60	1	60	n	0.06	5	82	5	82	n	0.14	6	37	6	37	n	0.07	4	51	4	51	n	ENSMUSG00000022992.18	Kansl2	chr15	protein_coding	KAT8 regulatory NSL complex subunit 2
novel_NIR_7223	chr15	98418306	98419517	-	98418306	98422442	A5SS	ENSMUST00000116400.4	novel	0.09	1	10	1	10	n	0.69	9	4	9	4	y	0.50	4	4	4	4	y	0.57	8	6	8	6	y	0.62	10	6	10	6	y	0.25	2	6	2	6	y	0.33	9	18	9	18	y	0.57	4	3	4	3	y	0.14	1	6	1	6	n	0.38	5	8	5	8	y	0.75	6	2	6	2	y	0.40	4	6	4	6	y	ENSMUSG00000022992.18	Kansl2	chr15	protein_coding	KAT8 regulatory NSL complex subunit 2
novel_NIR_7224	chr15	98429403	98429601	-	98427334	98429601	A3SS	ENSMUST00000231066.2	novel	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.15	2	11	2	11	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	ENSMUSG00000022992.18	Kansl2	chr15	protein_coding	KAT8 regulatory NSL complex subunit 2
novel_NIR_7225	chr15	98429410	98429601	-	98427334	98429601	A3SS	ENSMUST00000231066.2	novel	0.29	2	5	2	5	y	0.67	2	1	2	1	y	0.14	1	6	1	6	n	0.00	0	1	0	1	n	0.33	4	8	4	8	y	0.57	4	3	4	3	y	0.36	4	7	4	7	y	0.00	0	2	0	2	n	0.18	2	9	2	9	y	0.21	3	11	3	11	y	0.00	0	5	0	5	n	0.29	2	5	2	5	y	ENSMUSG00000022992.18	Kansl2	chr15	protein_coding	KAT8 regulatory NSL complex subunit 2
novel_NIR_7226	chr15	98449520	98449795	-	98446592	98449795	A3SS	ENSMUST00000169707.8	novel	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.26	5	14	5	14	y	0.00	0	7	0	7	n	0.33	5	10	5	10	y	0.00	0	5	0	5	n	0.22	2	7	2	7	y	0.05	1	21	1	21	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	ENSMUSG00000011960.13	Ccnt1	chr15	protein_coding	cyclin T1
novel_NIR_7227	chr15	98457973	98458078	-	98452542	98458078	A3SS	ENSMUST00000169707.8	novel	0.00	0	4	0	4	n	0.31	4	9	4	9	y	0.00	0	12	0	12	n	0.29	2	5	2	5	y	0.05	1	21	1	21	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.10	1	9	1	9	n	0.00	0	2	0	2	n	0.20	5	20	5	20	y	0.50	2	2	2	2	y	0.38	3	5	3	5	y	ENSMUSG00000011960.13	Ccnt1	chr15	protein_coding	cyclin T1
novel_NIR_7228	chr15	98494099	98494433	-	98494099	98494398	A5SS	ENSMUST00000096224.6	novel	0.12	2	14	2	14	n	0.11	2	16	2	16	n	0.12	2	15	2	15	n	0.05	1	18	1	18	n	0.06	2	29	2	29	n	0.00	0	11	0	11	n	0.03	1	32	1	32	n	0.06	1	15	1	15	n	0.21	4	15	4	15	y	0.09	4	40	4	40	n	0.14	3	18	3	18	n	0.00	0	28	0	28	n	ENSMUSG00000022994.10	Adcy6	chr15	protein_coding	adenylate cyclase 6
novel_NIR_7229	chr15	98557475	98560659	-	98556316	98560659	A3SS	ENSMUST00000162384.2	novel	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.29	2	5	2	5	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	ENSMUSG00000003360.16	Ddx23	chr15	protein_coding	DEAD box helicase 23
novel_NIR_7230	chr15	98741366	98741476	-	98741373	98741476	A3SS	ENSMUST00000178486.9	novel	0.00	0	14	0	14	n	0.00	0	3	0	3	n	0.00	0	27	0	27	n	0.00	0	21	0	21	n	0.00	0	35	0	35	n	0.00	0	16	0	16	n	0.00	0	20	0	20	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	19	0	19	n	0.20	2	8	2	8	y	0.00	0	19	0	19	n	ENSMUSG00000048154.18	Kmt2d	chr15	protein_coding	lysine (K)-specific methyltransferase 2D
novel_NIR_7231	chr15	98751583	98751671	-	98751586	98751671	A3SS	ENSMUST00000178486.9	novel	0.60	3	2	3	2	y	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.06	1	16	1	16	n	0.14	1	6	1	6	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.33	1	2	1	2	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.12	1	7	1	7	n	ENSMUSG00000048154.18	Kmt2d	chr15	protein_coding	lysine (K)-specific methyltransferase 2D
novel_NIR_7232	chr15	98752284	98752412	-	98752305	98752412	A3SS	ENSMUST00000178486.9	novel	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.33	4	8	4	8	y	0.50	3	3	3	3	y	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.67	4	2	4	2	y	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.50	1	1	1	1	n	0.25	2	6	2	6	y	ENSMUSG00000048154.18	Kmt2d	chr15	protein_coding	lysine (K)-specific methyltransferase 2D
novel_NIR_7233	chr15	98754270	98754494	-	98754270	98754488	A5SS	ENSMUST00000178486.9	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.12	1	7	1	7	n	0.00	0	5	0	5	n	0.33	2	4	2	4	y	0.71	5	2	5	2	y	0.00	0	4	0	4	n	0.75	3	1	3	1	y	0.00	0	1	0	1	n	0.33	4	8	4	8	y	0.00	0	1	0	1	n	0.33	2	4	2	4	y	ENSMUSG00000048154.18	Kmt2d	chr15	protein_coding	lysine (K)-specific methyltransferase 2D
novel_NIR_7234	chr15	98758625	98758929	-	98758625	98758932	A5SS	ENSMUST00000178486.9	novel	0.50	3	3	3	3	y	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.29	2	5	2	5	y	1.00	5	0	5	0	y	0.00	0	3	0	3	n	0.44	4	5	4	5	y	0.38	5	8	5	8	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	ENSMUSG00000048154.18	Kmt2d	chr15	protein_coding	lysine (K)-specific methyltransferase 2D
novel_NIR_7235	chr15	98764097	98764257	-	98764100	98764257	A3SS	ENSMUST00000178486.9	novel	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	2	2	2	2	y	ENSMUSG00000048154.18	Kmt2d	chr15	protein_coding	lysine (K)-specific methyltransferase 2D
novel_NIR_7236	chr15	98995443	98997010	+	98991151	98997010	A5SS	ENSMUST00000146173.2	novel	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	10	0	10	0	y	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	ENSMUSG00000038009.8	Dnajc22	chr15	protein_coding	DnaJ heat shock protein family (Hsp40) member C22
novel_NIR_7237	chr15	98997451	98998704	+	98997194	98998704	A5SS	ENSMUST00000146173.2	novel	0.30	3	7	3	7	y	0.25	2	6	2	6	y	0.30	3	7	3	7	y	0.50	6	6	6	6	y	0.33	4	8	4	8	y	0.29	2	5	2	5	y	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.33	4	8	4	8	y	0.11	1	8	1	8	n	0.29	2	5	2	5	y	0.25	3	9	3	9	y	ENSMUSG00000038009.8	Dnajc22	chr15	protein_coding	DnaJ heat shock protein family (Hsp40) member C22
novel_NIR_7238	chr15	98997496	98998704	+	98997194	98998704	A5SS	ENSMUST00000146173.2	novel	0.42	5	7	5	7	y	0.00	0	6	0	6	n	0.22	2	7	2	7	y	0.00	0	6	0	6	n	0.38	5	8	5	8	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.22	2	7	2	7	y	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.25	3	9	3	9	y	ENSMUSG00000038009.8	Dnajc22	chr15	protein_coding	DnaJ heat shock protein family (Hsp40) member C22
novel_NIR_7239	chr15	98997500	98998704	+	98997194	98998704	A5SS	ENSMUST00000146173.2	novel	0.50	7	7	7	7	y	0.57	8	6	8	6	y	0.59	10	7	10	7	y	0.50	6	6	6	6	y	0.72	21	8	21	8	y	0.58	7	5	7	5	y	0.74	14	5	14	5	y	0.12	1	7	1	7	n	0.58	11	8	11	8	y	0.58	11	8	11	8	y	0.55	6	5	6	5	y	0.31	4	9	4	9	y	ENSMUSG00000038009.8	Dnajc22	chr15	protein_coding	DnaJ heat shock protein family (Hsp40) member C22
novel_NIR_7240	chr15	99199879	99201164	+	99193154	99201164	A5SS	ENSMUST00000128352.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.33	2	4	2	4	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023007.16	Prpf40b	chr15	protein_coding	pre-mRNA processing factor 40B
novel_NIR_7241	chr15	99199879	99201164	+	99193309	99201164	A5SS	ENSMUST00000130575.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023007.16	Prpf40b	chr15	protein_coding	pre-mRNA processing factor 40B
novel_NIR_7242	chr15	99199879	99201164	+	99199865	99201164	A5SS	ENSMUST00000138036.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	1	0	1	n	1.00	4	0	4	0	y	1.00	1	0	1	0	n	0.67	2	1	2	1	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000023007.16	Prpf40b	chr15	protein_coding	pre-mRNA processing factor 40B
novel_NIR_7243	chr15	99207916	99208523	+	99207916	99212480	A3SS	ENSMUST00000136980.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023007.16	Prpf40b	chr15	protein_coding	pre-mRNA processing factor 40B
novel_NIR_7244	chr15	99207916	99208540	+	99207916	99212480	A3SS	ENSMUST00000136980.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000023007.16	Prpf40b	chr15	protein_coding	pre-mRNA processing factor 40B
novel_NIR_7245	chr15	99214163	99214342	+	99214261	99214342	A5SS	ENSMUST00000150641.8	novel	0.17	6	30	6	30	y	0.02	1	41	1	41	n	0.07	3	43	3	43	n	0.00	0	17	0	17	n	0.08	3	34	3	34	n	0.17	3	15	3	15	y	0.00	0	31	0	31	n	0.10	3	26	3	26	n	0.09	2	21	2	21	n	0.17	8	39	8	39	y	0.14	5	30	5	30	n	0.17	8	39	8	39	y	ENSMUSG00000023007.16	Prpf40b	chr15	protein_coding	pre-mRNA processing factor 40B
novel_NIR_7246	chr15	99214261	99214346	+	99214261	99214342	A3SS	ENSMUST00000150641.8	novel	0.00	0	30	0	30	n	0.09	4	41	4	41	n	0.10	5	43	5	43	n	0.00	0	17	0	17	n	0.06	2	34	2	34	n	0.06	1	15	1	15	n	0.00	0	31	0	31	n	0.07	2	26	2	26	n	0.16	4	21	4	21	y	0.07	3	39	3	39	n	0.00	0	30	0	30	n	0.15	7	39	7	39	y	ENSMUSG00000023007.16	Prpf40b	chr15	protein_coding	pre-mRNA processing factor 40B
novel_NIR_7247	chr15	99290921	99295765	+	99290921	99297942	A3SS	ENSMUST00000161778.8	novel	0.75	3	1	3	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.50	2	2	2	2	y	0.67	2	1	2	1	y	ENSMUSG00000023010.16	Tmbim6	chr15	protein_coding	transmembrane BAX inhibitor motif containing 6
novel_NIR_7248	chr15	99290921	99295765	+	99290921	99302295	A3SS	ENSMUST00000229392.2	novel	0.50	3	3	3	3	y	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.20	1	4	1	4	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.20	1	4	1	4	n	0.00	0	6	0	6	n	0.14	1	6	1	6	n	0.25	2	6	2	6	y	0.20	2	8	2	8	y	ENSMUSG00000023010.16	Tmbim6	chr15	protein_coding	transmembrane BAX inhibitor motif containing 6
novel_NIR_7249	chr15	99290921	99298999	+	99290921	99297942	A3SS&ES	ENSMUST00000161778.8	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	ENSMUSG00000023010.16	Tmbim6	chr15	protein_coding	transmembrane BAX inhibitor motif containing 6
novel_NIR_7250	chr15	99290921	99298999	+	99290921	99302295	A3SS	ENSMUST00000229392.2	novel	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.20	1	4	1	4	n	-	-	-	-	-	-	0.11	1	8	1	8	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.20	2	8	2	8	y	ENSMUSG00000023010.16	Tmbim6	chr15	protein_coding	transmembrane BAX inhibitor motif containing 6
novel_NIR_7251	chr15	99305224	99306320	+	99305224	99305824	A3SS	ENSMUST00000231173.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023010.16	Tmbim6	chr15	protein_coding	transmembrane BAX inhibitor motif containing 6
novel_NIR_7252	chr15	99305224	99306362	+	99305224	99305824	A3SS	ENSMUST00000231173.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023010.16	Tmbim6	chr15	protein_coding	transmembrane BAX inhibitor motif containing 6
novel_NIR_7253	chr15	99305224	99306609	+	99305224	99305824	A3SS	ENSMUST00000231173.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	30	0	30	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023010.16	Tmbim6	chr15	protein_coding	transmembrane BAX inhibitor motif containing 6
novel_NIR_7254	chr15	99305224	99306636	+	99305224	99305824	3pMXE	ENSMUST00000231173.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	8	0	8	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023010.16	Tmbim6	chr15	protein_coding	transmembrane BAX inhibitor motif containing 6
novel_NIR_7255	chr15	99608471	99608974	+	99607297	99608974	A5SS	ENSMUST00000023759.6	novel	0.00	0	12	0	12	n	0.07	1	14	1	14	n	0.00	0	15	0	15	n	0.05	1	18	1	18	n	0.06	2	29	2	29	n	0.00	0	4	0	4	n	0.29	2	5	2	5	y	0.12	1	7	1	7	n	0.00	0	8	0	8	n	0.23	3	10	3	10	y	0.00	0	9	0	9	n	0.00	0	11	0	11	n	ENSMUSG00000023018.6	Smarcd1	chr15	protein_coding	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
novel_NIR_7256	chr15	99623729	99624453	+	99623729	99625216	A3SS	ENSMUST00000238530.2	novel	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.60	3	2	3	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.56	5	4	5	4	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000023020.4	Cox14	chr15	protein_coding	cytochrome c oxidase assembly protein 14
novel_NIR_7257	chr15	99636702	99637051	-	99636702	99637287	A5SS	ENSMUST00000109035.11	novel	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.40	2	3	2	3	y	0.00	0	15	0	15	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	ENSMUSG00000023021.16	Cers5	chr15	protein_coding	ceramide synthase 5
novel_NIR_7258	chr15	99649222	99681401	-	99649222	99669769	5pMXE	ENSMUST00000176627.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.25	1	3	1	3	n	ENSMUSG00000023021.16	Cers5	chr15	protein_coding	ceramide synthase 5
novel_NIR_7259	chr15	99649222	99681401	-	99649222	99670064	5pMXE	ENSMUST00000109035.11	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.33	2	4	2	4	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	4	0	4	n	0.25	1	3	1	3	n	ENSMUSG00000023021.16	Cers5	chr15	protein_coding	ceramide synthase 5
novel_NIR_7260	chr15	99649222	99681401	-	99649222	99670556	5pMXE	ENSMUST00000175876.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000023021.16	Cers5	chr15	protein_coding	ceramide synthase 5
novel_NIR_7261	chr15	99773623	99774174	+	99773623	99775201	A3SS	ENSMUST00000228976.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.12	1	7	1	7	n	0.50	1	1	1	1	n	0.11	1	8	1	8	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	ENSMUSG00000116518.2	Gm49494	chr15	lncRNA	predicted gene, 49494
novel_NIR_7262	chr15	99835769	99850366	+	99831495	99850366	A5SS	ENSMUST00000180309.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000096111.8	Gm21917	chr15	lncRNA	predicted gene, 21917
novel_NIR_7263	chr15	99835769	99850366	+	99832799	99850366	A5SS	ENSMUST00000177831.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000096111.8	Gm21917	chr15	lncRNA	predicted gene, 21917
novel_NIR_7264	chr15	99836369	99850366	+	99831495	99850366	A5SS	ENSMUST00000180309.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000096111.8	Gm21917	chr15	lncRNA	predicted gene, 21917
novel_NIR_7265	chr15	99836369	99850366	+	99832799	99850366	A5SS	ENSMUST00000177831.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000096111.8	Gm21917	chr15	lncRNA	predicted gene, 21917
novel_NIR_7266	chr16	10348676	10348789	-	10348676	10349464	A5SS	ENSMUST00000183355.8	novel	0.00	0	8	0	8	n	0.19	3	13	3	13	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.00	0	6	0	6	n	0.78	7	2	7	2	y	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	12	0	12	n	0.13	2	13	2	13	n	0.33	2	4	2	4	y	0.44	4	5	4	5	y	ENSMUSG00000038055.13	Dexi	chr16	protein_coding	dexamethasone-induced transcript
novel_NIR_7267	chr16	10348676	10348789	-	10348676	10360136	A5SS	ENSMUST00000038281.6	novel	0.00	0	76	0	76	n	0.03	3	83	3	83	n	0.00	0	56	0	56	n	0.01	1	67	1	67	n	0.00	0	73	0	73	n	0.18	7	32	7	32	y	0.00	0	85	0	85	n	0.00	0	50	0	50	n	0.00	0	63	0	63	n	0.02	2	86	2	86	n	0.03	2	75	2	75	n	0.05	4	69	4	69	n	ENSMUSG00000038055.13	Dexi	chr16	protein_coding	dexamethasone-induced transcript
novel_NIR_7268	chr16	10348676	10354078	-	10348676	10349464	5pMXE	ENSMUST00000183355.8	novel	0.38	5	8	5	8	y	0.28	5	13	5	13	y	0.76	13	4	13	4	y	0.44	4	5	4	5	y	0.54	7	6	7	6	y	0.71	5	2	5	2	y	0.33	4	8	4	8	y	1.00	2	0	2	0	y	0.20	3	12	3	12	y	0.50	13	13	13	13	y	0.43	3	4	3	4	y	0.29	2	5	2	5	y	ENSMUSG00000038055.13	Dexi	chr16	protein_coding	dexamethasone-induced transcript
novel_NIR_7269	chr16	10348676	10354078	-	10348676	10360136	A5SS	ENSMUST00000038281.6	novel	0.06	5	76	5	76	n	0.06	5	83	5	83	n	0.19	13	56	13	56	y	0.06	4	67	4	67	n	0.09	7	73	7	73	n	0.14	5	32	5	32	n	0.04	4	85	4	85	n	0.04	2	50	2	50	n	0.05	3	63	3	63	n	0.13	13	86	13	86	n	0.04	3	75	3	75	n	0.03	2	69	2	69	n	ENSMUSG00000038055.13	Dexi	chr16	protein_coding	dexamethasone-induced transcript
novel_NIR_7270	chr16	10348676	10358691	-	10348676	10349464	5pMXE	ENSMUST00000183355.8	novel	0.00	0	8	0	8	n	0.24	4	13	4	13	y	0.20	1	4	1	4	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	ENSMUSG00000038055.13	Dexi	chr16	protein_coding	dexamethasone-induced transcript
novel_NIR_7271	chr16	10348676;10348858	10348789;10349464	-	10348676	10349464	cassetteExon	ENSMUST00000183355.8	novel	0.00	0.0	8	0;0	8	n	0.16	2.5	13	3;2	13	y	0.00	0.0	4	0;0	4	n	0.09	0.5	5	1;0	5	n	0.00	0.0	6	0;0	6	n	0.64	3.5	2	7;0	2	n	0.00	0.0	8	0;0	8	n	-	-	-	-	-	-	0.04	0.5	12	0;1	12	n	0.07	1.0	13	2;0	13	n	0.20	1.0	4	2;0	4	n	0.29	2.0	5	4;0	5	n	ENSMUSG00000038055.13	Dexi	chr16	protein_coding	dexamethasone-induced transcript
novel_NIR_7272	chr16	10349674	10360136	-	10337031	10360136	A3SS	ENSMUST00000184863.8	novel	0.75	3	1	3	1	y	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	ENSMUSG00000038055.13	Dexi	chr16	protein_coding	dexamethasone-induced transcript
novel_NIR_7273	chr16	10349910	10360136	-	10337031	10360136	A3SS	ENSMUST00000184863.8	novel	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038055.13	Dexi	chr16	protein_coding	dexamethasone-induced transcript
novel_NIR_7274	chr16	10354208	10360136	-	10337031	10360136	A3SS	ENSMUST00000184863.8	novel	0.80	4	1	4	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	8	0	8	0	y	1.00	1	0	1	0	n	1.00	9	0	9	0	y	1.00	2	0	2	0	y	1.00	9	0	9	0	y	1.00	12	0	12	0	y	1.00	5	0	5	0	y	1.00	4	0	4	0	y	ENSMUSG00000038055.13	Dexi	chr16	protein_coding	dexamethasone-induced transcript
novel_NIR_7275	chr16	10381296	10386246	+	10381134	10386246	A5SS	ENSMUST00000115824.10	novel	0.00	0	27	0	27	n	0.00	0	8	0	8	n	0.08	3	35	3	35	n	0.00	0	24	0	24	n	0.00	0	31	0	31	n	0.00	0	13	0	13	n	0.00	0	17	0	17	n	0.00	0	13	0	13	n	0.00	0	26	0	26	n	0.17	6	30	6	30	y	0.00	0	24	0	24	n	0.02	1	44	1	44	n	ENSMUSG00000068663.15	Clec16a	chr16	protein_coding	C-type lectin domain family 16, member A
novel_NIR_7276	chr16	10413897	10428869	+	10413897	10428867	A3SS	ENSMUST00000115827.8	novel	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	19	0	19	n	0.00	0	23	0	23	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	15	0	15	n	0.00	0	14	0	14	n	0.15	2	11	2	11	y	0.00	0	15	0	15	n	ENSMUSG00000068663.15	Clec16a	chr16	protein_coding	C-type lectin domain family 16, member A
novel_NIR_7277	chr16	10428640	10428867	+	10418581	10428867	A5SS	ENSMUST00000115823.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000068663.15	Clec16a	chr16	protein_coding	C-type lectin domain family 16, member A
novel_NIR_7278	chr16	10428640	10428867	+	10428743	10428867	5pMXE	ENSMUST00000122856.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000068663.15	Clec16a	chr16	protein_coding	C-type lectin domain family 16, member A
novel_NIR_7279	chr16	10448665	10449483	+	10448665	10449358	3pMXE	ENSMUST00000122856.8	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.33	1	2	1	2	n	0.60	6	4	6	4	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	ENSMUSG00000068663.15	Clec16a	chr16	protein_coding	C-type lectin domain family 16, member A
novel_NIR_7280	chr16	10448665	10449483	+	10448665	10453110	A3SS	ENSMUST00000115824.10	novel	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.12	1	7	1	7	n	0.55	6	5	6	5	y	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	ENSMUSG00000068663.15	Clec16a	chr16	protein_coding	C-type lectin domain family 16, member A
novel_NIR_7281	chr16	10453160	10462625	+	10453160	10456651	A3SS&ES	ENSMUST00000115828.9	novel	0.00	0	14	0	14	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.29	4	10	4	10	y	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	ENSMUSG00000068663.15	Clec16a	chr16	protein_coding	C-type lectin domain family 16, member A
novel_NIR_7282	chr16	10453160	10462625	+	10453160;10456779	10456651;10462625	ES	ENSMUST00000115824.10	novel	0.00	0	12.0	0	14;10	n	0.00	0	6.5	0	4;9	n	0.00	0	12.5	0	13;12	n	0.32	4	8.5	4	10;7	y	0.00	0	9.0	0	8;10	n	0.00	0	7.5	0	5;10	n	0.00	0	14.0	0	9;19	n	0.00	0	8.5	0	5;12	n	0.00	0	8.5	0	7;10	n	0.00	0	10.0	0	6;14	n	0.00	0	7.0	0	4;10	n	0.00	0	9.0	0	8;10	n	ENSMUSG00000068663.15	Clec16a	chr16	protein_coding	C-type lectin domain family 16, member A
novel_NIR_7283	chr16	10784513	10785142	-	10784513	10793291	A5SS	ENSMUST00000117360.8	novel	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000022500.16	Litaf	chr16	protein_coding	LPS-induced TN factor
novel_NIR_7284	chr16	10784513	10785142	-	10784513	10883862	A5SS	ENSMUST00000162323.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022500.16	Litaf	chr16	protein_coding	LPS-induced TN factor
novel_NIR_7285	chr16	10784513	10795847	-	10784513	10793291	5pMXE	ENSMUST00000117360.8	novel	0.75	3	1	3	1	y	0.67	2	1	2	1	y	0.67	4	2	4	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	ENSMUSG00000022500.16	Litaf	chr16	protein_coding	LPS-induced TN factor
novel_NIR_7286	chr16	10784513	10795847	-	10784513	10883862	A5SS	ENSMUST00000162323.2	novel	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000022500.16	Litaf	chr16	protein_coding	LPS-induced TN factor
novel_NIR_7287	chr16	10784513	10810239	-	10784513	10793291	5pMXE	ENSMUST00000117360.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.67	4	2	4	2	y	ENSMUSG00000022500.16	Litaf	chr16	protein_coding	LPS-induced TN factor
novel_NIR_7288	chr16	10784513	10810239	-	10784513	10883862	A5SS	ENSMUST00000162323.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	ENSMUSG00000022500.16	Litaf	chr16	protein_coding	LPS-induced TN factor
novel_NIR_7289	chr16	10784513	10810320	-	10784513	10793291	5pMXE	ENSMUST00000117360.8	novel	0.80	4	1	4	1	y	0.75	3	1	3	1	y	0.78	7	2	7	2	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.50	2	2	2	2	y	ENSMUSG00000022500.16	Litaf	chr16	protein_coding	LPS-induced TN factor
novel_NIR_7290	chr16	10784513	10810320	-	10784513	10883862	A5SS	ENSMUST00000162323.2	novel	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	7	0	7	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	ENSMUSG00000022500.16	Litaf	chr16	protein_coding	LPS-induced TN factor
novel_NIR_7291	chr16	10784513	10820207	-	10784513	10793291	5pMXE	ENSMUST00000117360.8	novel	0.75	3	1	3	1	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000022500.16	Litaf	chr16	protein_coding	LPS-induced TN factor
novel_NIR_7292	chr16	10784513	10820207	-	10784513	10883862	A5SS	ENSMUST00000162323.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022500.16	Litaf	chr16	protein_coding	LPS-induced TN factor
novel_NIR_7293	chr16	10791637	10793291	-	10784513	10793291	A3SS	ENSMUST00000117360.8	novel	0.50	1	1	1	1	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	2	2	2	2	y	ENSMUSG00000022500.16	Litaf	chr16	protein_coding	LPS-induced TN factor
novel_NIR_7294	chr16	10902757	10905874	-	10902757	10904759	5pMXE	ENSMUST00000146081.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022498.17	Txndc11	chr16	protein_coding	thioredoxin domain containing 11
novel_NIR_7295	chr16	10922523	10940534	-	10911792	10940534	A3SS	ENSMUST00000131012.2	novel	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.50	1	1	1	1	n	1.00	3	0	3	0	y	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	8	0	8	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022498.17	Txndc11	chr16	protein_coding	thioredoxin domain containing 11
novel_NIR_7296	chr16	10930082	10934659	-	10924135	10934659	A3SS	ENSMUST00000147884.2	novel	0.22	4	14	4	14	y	0.00	0	26	0	26	n	0.10	6	57	6	57	n	0.00	0	23	0	23	n	0.07	2	28	2	28	n	0.00	0	17	0	17	n	0.06	1	15	1	15	n	0.00	0	22	0	22	n	0.05	1	19	1	19	n	0.05	1	19	1	19	n	0.00	0	29	0	29	n	0.00	0	16	0	16	n	ENSMUSG00000022498.17	Txndc11	chr16	protein_coding	thioredoxin domain containing 11
novel_NIR_7297	chr16	10969074	10970923	-	10970195	10970923	A3SS&ES	ENSMUST00000140755.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000037965.16	Zc3h7a	chr16	protein_coding	zinc finger CCCH type containing 7 A
novel_NIR_7298	chr16	11185665	11188667	+	11185665	11213083	A3SS	ENSMUST00000180792.8	novel	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.00	0	8	0	8	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	ENSMUSG00000071669.15	Snx29	chr16	protein_coding	sorting nexin 29
novel_NIR_7299	chr16	11478491	11480946	+	11478491	11494986	A3SS	ENSMUST00000150993.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000071669.15	Snx29	chr16	protein_coding	sorting nexin 29
novel_NIR_7300	chr16	11478491	11480946	+	11478491	11532778	A3SS	ENSMUST00000180792.8	novel	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.18	2	9	2	9	y	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	7	0	7	n	ENSMUSG00000071669.15	Snx29	chr16	protein_coding	sorting nexin 29
novel_NIR_7301	chr16	11623447	11705442	-	11703609	11705442	3pMXE	ENSMUST00000073371.7	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.50	3	3	3	3	y	0.08	1	11	1	11	n	0.20	1	4	1	4	n	-	-	-	-	-	-	0.12	1	7	1	7	n	0.33	1	2	1	2	n	0.25	2	6	2	6	y	0.33	2	4	2	4	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	ENSMUSG00000065979.13	Cpped1	chr16	protein_coding	calcineurin-like phosphoesterase domain containing 1
novel_NIR_7302	chr16	12062627	12134857	+	12062627	12085288	3pMXE	ENSMUST00000023138.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022494.16	Shisa9	chr16	protein_coding	shisa family member 9
novel_NIR_7303	chr16	12943276	12944259	+	12943295	12944259	A5SS	ENSMUST00000023206.14	novel	0.00	0	9	0	9	n	0.12	1	7	1	7	n	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.20	3	12	3	12	y	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	ENSMUSG00000022545.14	Ercc4	chr16	protein_coding	excision repair cross-complementing rodent repair deficiency, complementation group 4
novel_NIR_7304	chr16	13074161	13082943	+	13074418	13082943	5pMXE	ENSMUST00000009713.14	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	1.00	2	0	2	0	y	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000009569.15	Mrtfb	chr16	protein_coding	myocardin related transcription factor B
novel_NIR_7305	chr16	13144435	13150483	+	13144435	13196128	A3SS	ENSMUST00000009713.14	novel	0.00	0	6	0	6	n	0.33	1	2	1	2	n	0.08	1	12	1	12	n	0.00	0	13	0	13	n	0.00	0	16	0	16	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.10	1	9	1	9	n	0.22	2	7	2	7	y	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	ENSMUSG00000009569.15	Mrtfb	chr16	protein_coding	myocardin related transcription factor B
novel_NIR_7306	chr16	13144435	13150483	+	13144435;13149940	13149878;13150483	ES	ENSMUST00000115809.8	novel	0.00	0	0.5	0	0;1	n	0.67	1	0.5	1	1;0	n	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	0.00	0	1.0	0	1;1	n	0.00	0	1.0	0	2;0	n	-	-	-	-	-	-	0.67	1	0.5	1	1;0	n	1.00	2	0.0	2	0;0	y	0.00	0	1.0	0	0;2	n	0.00	0	1.0	0	1;1	n	-	-	-	-	-	-	ENSMUSG00000009569.15	Mrtfb	chr16	protein_coding	myocardin related transcription factor B
novel_NIR_7307	chr16	13223271	13223698	+	13223271	13223629	A3SS	ENSMUST00000009713.14	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.20	2	8	2	8	y	0.00	0	16	0	16	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	ENSMUSG00000009569.15	Mrtfb	chr16	protein_coding	myocardin related transcription factor B
novel_NIR_7308	chr16	13359104	13384434	-	13359112	13384434	A3SS	ENSMUST00000058884.10	novel	0.00	0	55	0	55	n	0.00	0	47	0	47	n	0.00	0	89	0	89	n	0.00	0	68	0	68	n	0.00	0	76	0	76	n	0.00	0	54	0	54	n	0.00	0	63	0	63	n	0.00	0	51	0	51	n	0.00	0	37	0	37	n	0.00	0	72	0	72	n	0.15	9	52	9	52	y	0.00	0	60	0	60	n	ENSMUSG00000022685.10	Parn	chr16	protein_coding	poly(A)-specific ribonuclease (deadenylation nuclease)
novel_NIR_7309	chr16	13469700	13472313	-	13469700	13482681	A5SS	ENSMUST00000229042.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000022685.10	Parn	chr16	protein_coding	poly(A)-specific ribonuclease (deadenylation nuclease)
novel_NIR_7310	chr16	13485475	13485738	-	13485475	13485875	A5SS	ENSMUST00000058884.10	novel	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.03	1	33	1	33	n	0.00	0	20	0	20	n	0.00	0	13	0	13	n	0.23	3	10	3	10	y	0.06	1	17	1	17	n	0.36	5	9	5	9	y	0.00	0	13	0	13	n	0.00	0	19	0	19	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	ENSMUSG00000022685.10	Parn	chr16	protein_coding	poly(A)-specific ribonuclease (deadenylation nuclease)
novel_NIR_7311	chr16	13489942	13502987	+	13489942	13494698	3pMXE	ENSMUST00000225585.2	novel	0.80	4	1	4	1	y	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.53	8	7	8	7	y	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.57	4	3	4	3	y	-	-	-	-	-	-	0.36	4	7	4	7	y	1.00	1	0	1	0	n	0.00	0	7	0	7	n	ENSMUSG00000079737.5	3110001I22Rik	chr16	protein_coding	RIKEN cDNA 3110001I22 gene
novel_NIR_7312	chr16	13489942	13505255	+	13489942	13494698	3pMXE	ENSMUST00000225585.2	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.40	2	3	2	3	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	7	0	7	n	ENSMUSG00000079737.5	3110001I22Rik	chr16	protein_coding	RIKEN cDNA 3110001I22 gene
novel_NIR_7313	chr16	13509056	13510297	+	13503262	13510297	A5SS	ENSMUST00000069281.8	novel	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000022684.16	Bfar	chr16	protein_coding	bifunctional apoptosis regulator
novel_NIR_7314	chr16	13509056	13510297	+	13505459	13510297	A5SS	ENSMUST00000127973.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022684.16	Bfar	chr16	protein_coding	bifunctional apoptosis regulator
novel_NIR_7315	chr16	13637510	13644747	+	13637300	13644747	A5SS	ENSMUST00000230788.2	novel	0.00	0	15	0	15	n	0.00	0	17	0	17	n	0.00	0	18	0	18	n	0.00	0	10	0	10	n	0.00	0	23	0	23	n	0.00	0	17	0	17	n	0.15	2	11	2	11	y	0.00	0	12	0	12	n	0.00	0	22	0	22	n	0.00	0	14	0	14	n	0.00	0	22	0	22	n	0.00	0	16	0	16	n	ENSMUSG00000022681.16	Ntan1	chr16	protein_coding	N-terminal Asn amidase
novel_NIR_7316	chr16	13654474	13654907	-	13652710	13654907	A3SS	ENSMUST00000115804.9	novel	0.00	0	19	0	19	n	0.00	0	35	0	35	n	0.27	8	22	8	22	y	0.00	0	26	0	26	n	0.00	0	34	0	34	n	0.00	0	11	0	11	n	0.00	0	39	0	39	n	0.00	0	17	0	17	n	0.00	0	26	0	26	n	0.00	0	43	0	43	n	0.00	0	22	0	22	n	0.00	0	30	0	30	n	ENSMUSG00000022680.15	Pdxdc1	chr16	protein_coding	pyridoxal-dependent decarboxylase domain containing 1
novel_NIR_7317	chr16	13654497	13654907	-	13652710	13654907	A3SS	ENSMUST00000115804.9	novel	0.05	1	19	1	19	n	0.08	3	35	3	35	n	0.00	0	22	0	22	n	0.00	0	26	0	26	n	0.11	4	34	4	34	n	0.08	1	11	1	11	n	0.09	4	39	4	39	n	0.19	4	17	4	17	y	0.04	1	26	1	26	n	0.20	11	43	11	43	y	0.12	3	22	3	22	n	0.06	2	30	2	30	n	ENSMUSG00000022680.15	Pdxdc1	chr16	protein_coding	pyridoxal-dependent decarboxylase domain containing 1
novel_NIR_7318	chr16	13661740	13672259	-	13668270	13672259	3pMXE	ENSMUST00000115802.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000022680.15	Pdxdc1	chr16	protein_coding	pyridoxal-dependent decarboxylase domain containing 1
novel_NIR_7319	chr16	13663287	13672259	-	13668270	13672259	3pMXE	ENSMUST00000115802.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022680.15	Pdxdc1	chr16	protein_coding	pyridoxal-dependent decarboxylase domain containing 1
novel_NIR_7320	chr16	13958173	13959507	-	13958236	13959507	A3SS	ENSMUST00000090300.6	novel	0.00	0	17	0	17	n	0.08	1	11	1	11	n	0.23	5	17	5	17	y	0.00	0	30	0	30	n	0.09	3	31	3	31	n	0.00	0	10	0	10	n	0.14	3	19	3	19	n	0.00	0	14	0	14	n	0.00	0	18	0	18	n	0.00	0	41	0	41	n	0.00	0	16	0	16	n	0.11	4	31	4	31	n	ENSMUSG00000060657.9	Marf1	chr16	protein_coding	meiosis regulator and mRNA stability 1
novel_NIR_7321	chr16	13958236	13959549	-	13958236	13959507	A5SS	ENSMUST00000090300.6	novel	0.15	3	17	3	17	y	0.08	1	11	1	11	n	0.06	1	17	1	17	n	0.12	4	30	4	30	n	0.16	6	31	6	31	y	0.38	6	10	6	10	y	0.17	4	19	4	19	y	0.30	6	14	6	14	y	0.25	6	18	6	18	y	0.18	9	41	9	41	y	0.30	7	16	7	16	y	0.09	3	31	3	31	n	ENSMUSG00000060657.9	Marf1	chr16	protein_coding	meiosis regulator and mRNA stability 1
novel_NIR_7322	chr16	13970223	13970427	-	13969180	13970427	A3SS	ENSMUST00000229614.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.43	3	4	3	4	y	ENSMUSG00000060657.9	Marf1	chr16	protein_coding	meiosis regulator and mRNA stability 1
novel_NIR_7323	chr16	13988355	13992907	+	13988355	14001340	A3SS	ENSMUST00000132316.8	novel	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000022678.17	Nde1	chr16	protein_coding	nudE neurodevelopment protein 1
novel_NIR_7324	chr16	15666589	15680262	-	15678634	15680262	A3SS&ES	ENSMUST00000229680.2	novel	1.00	2	0	2	0	y	0.00	0	5	0	5	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000022671.14	Mzt2	chr16	protein_coding	mitotic spindle organizing protein 2
novel_NIR_7325	chr16	15801622	15855354	-	15786581	15855354	A3SS	ENSMUST00000040248.9	novel	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	17	0	17	n	0.25	2	6	2	6	y	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	ENSMUSG00000041974.11	Spidr	chr16	protein_coding	scaffolding protein involved in DNA repair
novel_NIR_7326	chr16	15871380	15891016	-	15871380	15932691	A5SS	ENSMUST00000040248.9	novel	0.00	0	6	0	6	n	-	-	-	-	-	-	0.30	3	7	3	7	y	0.00	0	9	0	9	n	0.00	0	4	0	4	n	1.00	3	0	3	0	y	0.25	2	6	2	6	y	0.50	2	2	2	2	y	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	ENSMUSG00000041974.11	Spidr	chr16	protein_coding	scaffolding protein involved in DNA repair
novel_NIR_7327	chr16	16082315	16085041	+	16080602	16085041	A5SS	ENSMUST00000039408.3	novel	0.03	2	71	2	71	n	0.02	1	58	1	58	n	0.04	4	91	4	91	n	0.04	3	79	3	79	n	0.12	12	86	12	86	n	0.04	2	53	2	53	n	0.08	6	72	6	72	n	0.21	13	49	13	49	y	0.05	3	52	3	52	n	0.06	5	84	5	84	n	0.08	4	44	4	44	n	0.03	2	77	2	77	n	ENSMUSG00000041957.16	Pkp2	chr16	protein_coding	plakophilin 2
novel_NIR_7328	chr16	16134642	16136628	-	16134642	16136309	A5SS&ES	ENSMUST00000230022.2	novel	0.00	0	12	0	12	n	0.10	1	9	1	9	n	0.32	6	13	6	13	y	0.09	1	10	1	10	n	0.30	6	14	6	14	y	0.21	3	11	3	11	y	0.14	2	12	2	12	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	20	0	20	n	0.05	1	18	1	18	n	0.18	3	14	3	14	y	ENSMUSG00000022789.16	Dnm1l	chr16	protein_coding	dynamin 1-like
novel_NIR_7329	chr16	16134642	16136628	-	16134642;16136341	16136309;16136628	ES	ENSMUST00000115749.3	novel	0.00	0	7.0	0	12;2	n	0.12	1	7.0	1	9;5	n	0.40	6	9.0	6	13;5	y	0.14	1	6.0	1	10;2	n	0.38	6	10.0	6	14;6	y	0.26	3	8.5	3	11;6	y	0.24	2	6.5	2	12;1	y	0.00	0	5.5	0	9;2	n	0.00	0	9.0	0	14;4	n	0.00	0	11.5	0	20;3	n	0.08	1	11.0	1	18;4	n	0.26	3	8.5	3	14;3	y	ENSMUSG00000022789.16	Dnm1l	chr16	protein_coding	dynamin 1-like
novel_NIR_7330	chr16	16696952	16697117	+	16696952	16697183	A3SS	ENSMUST00000232080.2	novel	0.17	2	10	2	10	y	0.00	0	16	0	16	n	0.06	2	29	2	29	n	0.00	0	24	0	24	n	0.00	0	37	0	37	n	0.00	0	12	0	12	n	0.00	0	27	0	27	n	0.00	0	25	0	25	n	0.00	0	25	0	25	n	0.03	1	32	1	32	n	0.04	1	25	1	25	n	0.02	1	40	1	40	n	ENSMUSG00000022779.17	Top3b	chr16	protein_coding	topoisomerase (DNA) III beta
novel_NIR_7331	chr16	16705587	16705682	+	16705587	16705722	A3SS	ENSMUST00000231278.2	novel	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.40	2	3	2	3	y	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	ENSMUSG00000022779.17	Top3b	chr16	protein_coding	topoisomerase (DNA) III beta
novel_NIR_7332	chr16	16705587	16705705	+	16705587	16705722	A3SS	ENSMUST00000231278.2	novel	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.43	3	4	3	4	y	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	ENSMUSG00000022779.17	Top3b	chr16	protein_coding	topoisomerase (DNA) III beta
novel_NIR_7333	chr16	16710644	16721188	+	16714488	16721188	5pMXE	ENSMUST00000027373.12	novel	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.50	3	3	3	3	y	0.20	1	4	1	4	n	ENSMUSG00000026181.14	Ppm1f	chr16	protein_coding	protein phosphatase 1F (PP2C domain containing)
novel_NIR_7334	chr16	16714613	16721188	+	16714488	16721188	A5SS	ENSMUST00000027373.12	novel	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.25	1	3	1	3	n	0.43	3	4	3	4	y	ENSMUSG00000026181.14	Ppm1f	chr16	protein_coding	protein phosphatase 1F (PP2C domain containing)
novel_NIR_7335	chr16	16908022	16909042	-	16908022	16909732	A5SS	ENSMUST00000232397.2	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022771.18	Ppil2	chr16	protein_coding	peptidylprolyl isomerase (cyclophilin)-like 2
novel_NIR_7336	chr16	16910097	16910875	-	16909753	16910875	A3SS	ENSMUST00000231451.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022771.18	Ppil2	chr16	protein_coding	peptidylprolyl isomerase (cyclophilin)-like 2
novel_NIR_7337	chr16	16918171	16923857	-	16918171	16929007	A5SS	ENSMUST00000232481.2	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000022771.18	Ppil2	chr16	protein_coding	peptidylprolyl isomerase (cyclophilin)-like 2
novel_NIR_7338	chr16	16970799	16971828	-	16970799	16972048	A5SS	ENSMUST00000232668.2	novel	0.00	0	2	0	2	n	1.00	9	0	9	0	y	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000038965.18	Ube2l3	chr16	protein_coding	ubiquitin-conjugating enzyme E2L 3
novel_NIR_7339	chr16	17076937	17093930	+	17072930	17093930	A5SS	ENSMUST00000232426.2	novel	0.50	1	1	1	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	2	2	2	2	y	ENSMUSG00000116743.2	Gm49573	chr16	lncRNA	predicted gene, 49573
novel_NIR_7340	chr16	17095587	17095715	+	17095605	17095715	A5SS	ENSMUST00000164950.11	novel	0.29	2	5	2	5	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	6	0	6	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	ENSMUSG00000055692.22	Tmem191c	chr16	protein_coding	transmembrane protein 191C
novel_NIR_7341	chr16	17099845	17100679	+	17095755	17100679	A5SS	ENSMUST00000232167.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.78	7	2	7	2	y	ENSMUSG00000055692.22	Tmem191c	chr16	protein_coding	transmembrane protein 191C
novel_NIR_7342	chr16	17154166	17166579	-	17143913	17166579	A3SS	ENSMUST00000036161.12	novel	0.00	0	16	0	16	n	0.07	1	14	1	14	n	0.00	0	43	0	43	n	0.03	1	28	1	28	n	0.03	1	33	1	33	n	0.00	0	16	0	16	n	0.10	3	27	3	27	n	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.03	1	29	1	29	n	0.36	8	14	8	14	y	0.00	0	33	0	33	n	ENSMUSG00000041720.15	Pi4ka	chr16	protein_coding	phosphatidylinositol 4-kinase alpha
novel_NIR_7343	chr16	17163532	17166579	-	17143913	17166579	A3SS	ENSMUST00000036161.12	novel	0.27	6	16	6	16	y	0.42	10	14	10	14	y	0.02	1	43	1	43	n	0.28	11	28	11	28	y	0.45	27	33	27	33	y	0.11	2	16	2	16	n	0.36	15	27	15	27	y	0.32	6	13	6	13	y	0.39	9	14	9	14	y	0.34	15	29	15	29	y	0.52	15	14	15	14	y	0.11	4	33	4	33	n	ENSMUSG00000041720.15	Pi4ka	chr16	protein_coding	phosphatidylinositol 4-kinase alpha
novel_NIR_7344	chr16	17199753	17207205	-	17199753;17204193	17204100;17207205	ES	ENSMUST00000036161.12	novel	0.06	1	17.0	1	17;17	n	0.00	0	14.0	0	19;9	n	0.00	0	25.0	0	17;33	n	0.00	0	18.5	0	25;12	n	0.09	3	29.0	3	31;27	n	0.00	0	9.5	0	11;8	n	0.00	0	21.5	0	24;19	n	0.00	0	13.0	0	13;13	n	0.11	2	15.5	2	14;17	n	0.15	4	23.0	4	20;26	y	0.11	1	8.5	1	10;7	n	0.04	1	24.5	1	22;27	n	ENSMUSG00000041720.15	Pi4ka	chr16	protein_coding	phosphatidylinositol 4-kinase alpha
novel_NIR_7345	chr16	17307755	17308848	+	17307755	17309157	A3SS	ENSMUST00000023448.15	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.25	2	6	2	6	y	-	-	-	-	-	-	0.10	1	9	1	9	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	ENSMUSG00000022763.19	Aifm3	chr16	protein_coding	apoptosis-inducing factor, mitochondrion-associated 3
novel_NIR_7346	chr16	17336438	17337192	+	17336438	17337197	A3SS	ENSMUST00000231994.2	novel	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022761.13	Lztr1	chr16	protein_coding	leucine-zipper-like transcriptional regulator, 1
novel_NIR_7347	chr16	17337390	17338416	+	17337390	17338300	A3SS	ENSMUST00000023444.11	novel	0.14	6	37	6	37	n	0.20	6	24	6	24	y	0.06	4	68	4	68	n	0.04	2	43	2	43	n	0.12	5	38	5	38	n	0.06	2	34	2	34	n	0.02	1	44	1	44	n	0.05	1	18	1	18	n	0.00	0	28	0	28	n	0.08	5	59	5	59	n	0.09	3	32	3	32	n	0.09	5	49	5	49	n	ENSMUSG00000022761.13	Lztr1	chr16	protein_coding	leucine-zipper-like transcriptional regulator, 1
novel_NIR_7348	chr16	17473669	17480727	-	17473669	17481241	A5SS	ENSMUST00000012259.9	novel	0.06	1	17	1	17	n	0.20	6	24	6	24	y	0.08	4	49	4	49	n	0.00	0	37	0	37	n	0.15	5	28	5	28	y	0.09	4	41	4	41	n	0.12	4	28	4	28	n	0.09	3	29	3	29	n	0.00	0	24	0	24	n	0.19	8	34	8	34	y	0.00	0	24	0	24	n	0.12	6	42	6	42	n	ENSMUSG00000012114.18	Med15	chr16	protein_coding	mediator complex subunit 15
novel_NIR_7349	chr16	17473669	17480727	-	17473669	17489409	A5SS	ENSMUST00000080936.14	novel	0.10	1	9	1	9	n	0.55	6	5	6	5	y	0.36	4	7	4	7	y	0.00	0	9	0	9	n	0.31	5	11	5	11	y	0.57	4	3	4	3	y	0.44	4	5	4	5	y	0.38	3	5	3	5	y	0.00	0	4	0	4	n	0.57	8	6	8	6	y	0.00	0	12	0	12	n	0.50	6	6	6	6	y	ENSMUSG00000012114.18	Med15	chr16	protein_coding	mediator complex subunit 15
novel_NIR_7350	chr16	17473669	17480727	-	17473669	17490933	A5SS	ENSMUST00000232645.2	novel	0.12	1	7	1	7	n	0.60	6	4	6	4	y	0.80	4	1	4	1	y	0.00	0	4	0	4	n	0.62	5	3	5	3	y	0.80	4	1	4	1	y	0.40	4	6	4	6	y	1.00	3	0	3	0	y	0.00	0	3	0	3	n	0.73	8	3	8	3	y	0.00	0	2	0	2	n	0.67	6	3	6	3	y	ENSMUSG00000012114.18	Med15	chr16	protein_coding	mediator complex subunit 15
novel_NIR_7351	chr16	17473669	17480727	-	17473669	17540620	A5SS	ENSMUST00000231674.2	novel	1.00	1	0	1	0	n	1.00	6	0	6	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	4	0	4	0	y	1.00	4	0	4	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	8	0	8	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	ENSMUSG00000012114.18	Med15	chr16	protein_coding	mediator complex subunit 15
novel_NIR_7352	chr16	17473669	17501023	-	17473669	17540620	A5SS	ENSMUST00000231674.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000012114.18	Med15	chr16	protein_coding	mediator complex subunit 15
novel_NIR_7353	chr16	17481360	17490933	-	17473669	17490933	A3SS	ENSMUST00000232645.2	novel	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.75	3	1	3	1	y	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.25	2	6	2	6	y	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000012114.18	Med15	chr16	protein_coding	mediator complex subunit 15
novel_NIR_7354	chr16	17515558	17520471	-	17515558	17515941	A5SS&ES	ENSMUST00000232645.2	novel	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000012114.18	Med15	chr16	protein_coding	mediator complex subunit 15
novel_NIR_7355	chr16	17515558	17520471	-	17515558	17524263	A5SS	ENSMUST00000232431.2	novel	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.11	1	8	1	8	n	0.00	0	1	0	1	n	0.22	2	7	2	7	y	0.43	3	4	3	4	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	ENSMUSG00000012114.18	Med15	chr16	protein_coding	mediator complex subunit 15
novel_NIR_7356	chr16	17515558	17520471	-	17515558	17550364	A5SS	ENSMUST00000231413.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000012114.18	Med15	chr16	protein_coding	mediator complex subunit 15
novel_NIR_7357	chr16	17655335	17655591	-	17655335	17655695	A5SS	ENSMUST00000118960.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000090236.4	Car15	chr16	protein_coding	carbonic anhydrase 15
novel_NIR_7358	chr16	17690549	17709421	-	17690549	17711266	A5SS	ENSMUST00000155943.9	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000003166.21	Dgcr2	chr16	protein_coding	DiGeorge syndrome critical region gene 2
novel_NIR_7359	chr16	17690549	17709421	-	17690549	17715024	A5SS	ENSMUST00000231750.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000003166.21	Dgcr2	chr16	protein_coding	DiGeorge syndrome critical region gene 2
novel_NIR_7360	chr16	17722975	17723763	-	17722975	17724135	A5SS	ENSMUST00000232423.2	novel	0.00	0	20	0	20	n	0.00	0	14	0	14	n	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.00	0	17	0	17	n	0.07	1	13	1	13	n	0.00	0	13	0	13	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.17	3	15	3	15	y	0.00	0	15	0	15	n	ENSMUSG00000003527.10	Ess2	chr16	protein_coding	ess-2 splicing factor
novel_NIR_7361	chr16	17891583	17894106	-	17890402	17894106	A3SS	ENSMUST00000232554.2	novel	1.00	9	0	9	0	y	0.62	5	3	5	3	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	9	0	9	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	10	0	10	0	y	0.89	8	1	8	1	y	1.00	8	0	8	0	y	1.00	2	0	2	0	y	ENSMUSG00000003526.13	Prodh	chr16	protein_coding	proline dehydrogenase
novel_NIR_7362	chr16	17895454;17895884	17895653;17897051	-	17895454	17897051	cassetteExon	ENSMUST00000126087.2	novel	1.00	8.0	0	6;10	0	y	1.00	5.0	0	2;8	0	y	1.00	0.5	0	0;1	0	n	1.00	3.5	0	0;7	0	n	1.00	3.0	0	1;5	0	n	-	-	-	-	-	-	1.00	3.5	0	1;6	0	n	1.00	0.5	0	1;0	0	n	1.00	5.0	0	2;8	0	y	1.00	6.0	0	0;12	0	n	0.75	6.0	2	1;11	2	n	1.00	2.0	0	3;1	0	n	ENSMUSG00000003526.13	Prodh	chr16	protein_coding	proline dehydrogenase
novel_NIR_7363	chr16	17895884	17897051	-	17895454	17897051	A3SS	ENSMUST00000126087.2	novel	1.00	10	0	10	0	n	1.00	8	0	8	0	n	1.00	1	0	1	0	n	1.00	7	0	7	0	y	1.00	5	0	5	0	n	-	-	-	-	-	-	1.00	6	0	6	0	n	-	-	-	-	-	-	1.00	8	0	8	0	n	1.00	12	0	12	0	y	0.85	11	2	11	2	n	1.00	1	0	1	0	n	ENSMUSG00000003526.13	Prodh	chr16	protein_coding	proline dehydrogenase
novel_NIR_7364	chr16	17899429	17899583	-	17899429	17899913	A5SS	ENSMUST00000123969.3	novel	0.00	0	2	0	2	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.33	2	4	2	4	y	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000003526.13	Prodh	chr16	protein_coding	proline dehydrogenase
novel_NIR_7365	chr16	17902619	17906740	-	17902619	17908007	A5SS	ENSMUST00000136776.8	novel	1.00	1	0	1	0	n	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000003526.13	Prodh	chr16	protein_coding	proline dehydrogenase
novel_NIR_7366	chr16	17902619	17906815	-	17902619	17908007	A5SS	ENSMUST00000136776.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000003526.13	Prodh	chr16	protein_coding	proline dehydrogenase
novel_NIR_7367	chr16	18069524	18070006	+	18069524	18069990	A3SS	ENSMUST00000127239.8	novel	0.17	7	34	7	34	y	0.00	0	48	0	48	n	0.00	0	46	0	46	n	0.00	0	35	0	35	n	0.00	0	52	0	52	n	0.00	0	28	0	28	n	0.00	0	39	0	39	n	0.05	1	18	1	18	n	0.02	1	46	1	46	n	0.00	0	39	0	39	n	0.00	0	66	0	66	n	0.00	0	50	0	50	n	ENSMUSG00000022721.20	Trmt2a	chr16	protein_coding	TRM2 tRNA methyltransferase 2A
novel_NIR_7368	chr16	18069524	18070006	+	18069524	18070266	A3SS	ENSMUST00000059696.12	novel	1.00	7	0	7	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000022721.20	Trmt2a	chr16	protein_coding	TRM2 tRNA methyltransferase 2A
novel_NIR_7369	chr16	18070839	18070964	+	18070341	18070964	A5SS	ENSMUST00000232293.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000022721.20	Trmt2a	chr16	protein_coding	TRM2 tRNA methyltransferase 2A
novel_NIR_7370	chr16	18123975	18125834	-	18121719	18125834	A3SS	ENSMUST00000128580.8	novel	0.00	0	8	0	8	n	0.18	2	9	2	9	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.12	1	7	1	7	n	0.67	2	1	2	1	y	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	ENSMUSG00000013539.15	Tango2	chr16	protein_coding	transport and golgi organization 2
novel_NIR_7371	chr16	18142314	18161507	-	18142314	18149218	5pMXE	ENSMUST00000232588.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	ENSMUSG00000013539.15	Tango2	chr16	protein_coding	transport and golgi organization 2
novel_NIR_7372	chr16	18142314	18161507	-	18142314	18156473	A5SS&ES	ENSMUST00000232192.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.38	3	5	3	5	y	0.00	0	4	0	4	n	ENSMUSG00000013539.15	Tango2	chr16	protein_coding	transport and golgi organization 2
novel_NIR_7373	chr16	18142314	18161507	-	18142314	18161662	A5SS	ENSMUST00000231372.2	novel	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.08	2	23	2	23	n	0.00	0	22	0	22	n	0.00	0	5	0	5	n	0.03	1	35	1	35	n	0.00	0	6	0	6	n	0.05	1	19	1	19	n	0.00	0	10	0	10	n	0.17	3	15	3	15	y	0.00	0	11	0	11	n	ENSMUSG00000013539.15	Tango2	chr16	protein_coding	transport and golgi organization 2
novel_NIR_7374	chr16	18142314	18161507	-	18142314	18165735	A5SS	ENSMUST00000125287.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000013539.15	Tango2	chr16	protein_coding	transport and golgi organization 2
novel_NIR_7375	chr16	18222274	18222421	+	18222274	18222378	A3SS	ENSMUST00000239533.1	novel	0.00	0	9	0	9	n	0.17	1	5	1	5	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.05	1	18	1	18	n	0.25	2	6	2	6	y	0.00	0	21	0	21	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.06	1	15	1	15	n	0.00	0	18	0	18	n	ENSMUSG00000118669.2	Arvcf	chr16	protein_coding	--
novel_NIR_7376	chr16	18230707	18245029	-	18230707	18232016	5pMXE	ENSMUST00000165430.8	novel	0.01	3	232	3	232	n	0.01	2	144	2	144	n	0.17	5	25	5	25	y	0.00	0	503	0	503	n	0.31	9	20	9	20	y	0.00	0	2	0	2	n	0.03	3	84	3	84	n	0.27	3	8	3	8	y	0.00	0	513	0	513	n	0.01	4	687	4	687	n	0.00	3	837	3	837	n	0.00	1	321	1	321	n	ENSMUSG00000000326.14	Comt	chr16	protein_coding	catechol-O-methyltransferase
novel_NIR_7377	chr16	18240037	18240433	+	18240037	18240430	A3SS	ENSMUST00000150389.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000087556.2	Gm15764	chr16	lncRNA	predicted gene 15764
novel_NIR_7378	chr16	18247178	18248561	+	18247505	18248561	5pMXE	ENSMUST00000126778.8	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000075704.18	Txnrd2	chr16	protein_coding	thioredoxin reductase 2
novel_NIR_7379	chr16	18247178	18248561	+	18247779	18248561	5pMXE	ENSMUST00000144233.3	novel	1.00	3	0	3	0	y	0.33	1	2	1	2	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.33	2	4	2	4	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000075704.18	Txnrd2	chr16	protein_coding	thioredoxin reductase 2
novel_NIR_7380	chr16	18262024	18274774	+	18270887	18274774	5pMXE	ENSMUST00000153457.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000075704.18	Txnrd2	chr16	protein_coding	thioredoxin reductase 2
novel_NIR_7381	chr16	18634719	18636653	+	18634766	18636653	A5SS	ENSMUST00000163695.3	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000005262.14	Ufd1	chr16	protein_coding	ubiquitin recognition factor in ER-associated degradation 1
novel_NIR_7382	chr16	18655623	18657951	+	18655623	18655984	3pMXE	ENSMUST00000123146.8	novel	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.50	1	1	1	1	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000071632.11	2510002D24Rik	chr16	protein_coding	RIKEN cDNA 2510002D24 gene
novel_NIR_7383	chr16	18655623	18657951	+	18655623	18713524	A3SS	ENSMUST00000190050.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000099908.2	Gm28539	chr16	protein_coding	predicted gene 28539
novel_NIR_7384	chr16	18753929	18762011	+	18760343	18762011	5pMXE	ENSMUST00000232419.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022702.17	Hira	chr16	protein_coding	histone cell cycle regulator
novel_NIR_7385	chr16	19767011	19768200	-	19767048	19768200	A3SS	ENSMUST00000058839.10	novel	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	ENSMUSG00000043008.10	Klhl6	chr16	protein_coding	kelch-like 6
novel_NIR_7386	chr16	20324106	20324212	+	20324108	20324212	A5SS	ENSMUST00000231315.2	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	ENSMUSG00000003235.14	Eif2b5	chr16	protein_coding	eukaryotic translation initiation factor 2B, subunit 5 epsilon
novel_NIR_7387	chr16	20367867	20367985	+	20367845	20367985	A5SS	ENSMUST00000232680.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000003234.17	Abcf3	chr16	protein_coding	ATP-binding cassette, sub-family F (GCN20), member 3
novel_NIR_7388	chr16	20370904	20370986	+	20370904	20371073	A3SS	ENSMUST00000231590.2	novel	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.22	4	14	4	14	y	0.00	0	14	0	14	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.08	1	11	1	11	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	1.00	2	0	2	0	y	ENSMUSG00000003234.17	Abcf3	chr16	protein_coding	ATP-binding cassette, sub-family F (GCN20), member 3
novel_NIR_7389	chr16	20425621	20426514	-	20425352	20426514	A3SS	ENSMUST00000231386.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033809.16	Alg3	chr16	protein_coding	asparagine-linked glycosylation 3 (alpha-1,3-mannosyltransferase)
novel_NIR_7390	chr16	20427308	20427492	-	20424756	20427492	A3SS	ENSMUST00000231749.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033809.16	Alg3	chr16	protein_coding	asparagine-linked glycosylation 3 (alpha-1,3-mannosyltransferase)
novel_NIR_7391	chr16	20427308	20427492	-	20426634	20427492	A3SS	ENSMUST00000127454.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000033809.16	Alg3	chr16	protein_coding	asparagine-linked glycosylation 3 (alpha-1,3-mannosyltransferase)
novel_NIR_7392	chr16	20427311	20427492	-	20424756	20427492	A3SS	ENSMUST00000231749.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033809.16	Alg3	chr16	protein_coding	asparagine-linked glycosylation 3 (alpha-1,3-mannosyltransferase)
novel_NIR_7393	chr16	20427311	20427492	-	20426634	20427492	A3SS	ENSMUST00000127454.8	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000033809.16	Alg3	chr16	protein_coding	asparagine-linked glycosylation 3 (alpha-1,3-mannosyltransferase)
novel_NIR_7394	chr16	20491626	20492321	+	20491626	20492618	A3SS	ENSMUST00000044783.14	novel	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.00	0	15	0	15	n	0.14	1	6	1	6	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.19	4	17	4	17	y	0.00	0	5	0	5	n	0.00	0	3	0	3	n	ENSMUSG00000045983.17	Eif4g1	chr16	protein_coding	eukaryotic translation initiation factor 4, gamma 1
novel_NIR_7395	chr16	20491626	20492321	+	20491626	20492978	A3SS	ENSMUST00000140576.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000045983.17	Eif4g1	chr16	protein_coding	eukaryotic translation initiation factor 4, gamma 1
novel_NIR_7396	chr16	20491626	20492321	+	20491626	20494480	A3SS	ENSMUST00000143939.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045983.17	Eif4g1	chr16	protein_coding	eukaryotic translation initiation factor 4, gamma 1
novel_NIR_7397	chr16	20491626	20492693	+	20491626	20492618	A3SS	ENSMUST00000044783.14	novel	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	17	0	17	n	0.00	0	5	0	5	n	0.40	2	3	2	3	y	ENSMUSG00000045983.17	Eif4g1	chr16	protein_coding	eukaryotic translation initiation factor 4, gamma 1
novel_NIR_7398	chr16	20491626	20492693	+	20491626	20492978	A3SS	ENSMUST00000140576.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000045983.17	Eif4g1	chr16	protein_coding	eukaryotic translation initiation factor 4, gamma 1
novel_NIR_7399	chr16	20491626	20492693	+	20491626	20494480	A3SS	ENSMUST00000143939.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000045983.17	Eif4g1	chr16	protein_coding	eukaryotic translation initiation factor 4, gamma 1
novel_NIR_7400	chr16	20492711	20492982	+	20492711	20492918	A3SS	ENSMUST00000115457.8	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	9	0	9	0	y	1.00	7	0	7	0	y	1.00	8	0	8	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	2	0	2	0	y	1.00	12	0	12	0	y	ENSMUSG00000045983.17	Eif4g1	chr16	protein_coding	eukaryotic translation initiation factor 4, gamma 1
novel_NIR_7401	chr16	20494270	20494513	+	20494270	20494510	A3SS	ENSMUST00000231618.2	novel	0.50	2	2	2	2	y	0.38	3	5	3	5	y	0.05	2	37	2	37	n	0.30	3	7	3	7	y	0.33	6	12	6	12	y	0.14	1	6	1	6	n	0.09	1	10	1	10	n	0.45	10	12	10	12	y	0.50	4	4	4	4	y	0.24	6	19	6	19	y	0.00	0	10	0	10	n	0.60	9	6	9	6	y	ENSMUSG00000045983.17	Eif4g1	chr16	protein_coding	eukaryotic translation initiation factor 4, gamma 1
novel_NIR_7402	chr16	20530886	20531062	-	20530932	20531062	A3SS	ENSMUST00000007207.15	novel	0.10	7	66	7	66	n	0.04	3	67	3	67	n	0.20	2	8	2	8	y	0.03	3	87	3	87	n	0.11	9	76	9	76	n	0.00	0	9	0	9	n	0.07	5	65	5	65	n	0.05	1	20	1	20	n	0.06	5	76	5	76	n	0.06	9	154	9	154	n	0.15	13	75	13	75	y	0.04	4	100	4	100	n	ENSMUSG00000022843.18	Clcn2	chr16	protein_coding	chloride channel, voltage-sensitive 2
novel_NIR_7403	chr16	20531758	20532057	-	20531758	20532363	A5SS	ENSMUST00000232309.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000022843.18	Clcn2	chr16	protein_coding	chloride channel, voltage-sensitive 2
novel_NIR_7404	chr16	20535727	20536072	-	20535727	20536203	A5SS	ENSMUST00000131522.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022843.18	Clcn2	chr16	protein_coding	chloride channel, voltage-sensitive 2
novel_NIR_7405	chr16	20544635;20544820	20544752;20545056	-	20544635	20545056	cassetteExon	ENSMUST00000231826.2	novel	0.33	3.0	6	1;5	6	n	0.60	16.5	11	0;33	11	n	0.18	3.0	14	3;3	14	y	0.48	5.5	6	2;9	6	y	0.46	15.5	18	2;29	18	y	0.53	10.0	9	4;16	9	y	0.71	14.5	6	3;26	6	y	0.00	0.0	6	0;0	6	n	0.52	7.5	7	5;10	7	y	0.60	12.0	8	0;24	8	n	0.47	7.0	8	0;14	8	n	0.55	12.0	10	4;20	10	y	ENSMUSG00000022847.16	Thpo	chr16	protein_coding	thrombopoietin
novel_NIR_7406	chr16	20544635;20544851	20544752;20545056	-	20544635	20545056	cassetteExon	ENSMUST00000231826.2	novel	0.14	1.0	6	1;1	6	n	0.15	2.0	11	0;4	11	n	0.26	5.0	14	3;7	14	y	0.14	1.0	6	2;0	6	n	0.05	1.0	18	2;0	18	n	0.33	4.5	9	4;5	9	y	0.20	1.5	6	3;0	6	n	0.25	2.0	6	0;4	6	n	0.30	3.0	7	5;1	7	n	0.11	1.0	8	0;2	8	n	0.00	0.0	8	0;0	8	n	0.35	5.5	10	4;7	10	y	ENSMUSG00000022847.16	Thpo	chr16	protein_coding	thrombopoietin
novel_NIR_7407	chr16	20544635;20544888	20544752;20545056	-	20544635	20545056	cassetteExon	ENSMUST00000231826.2	novel	0.08	0.5	6	1;0	6	n	0.08	1.0	11	0;2	11	n	0.20	3.5	14	3;4	14	y	0.25	2.0	6	2;2	6	y	0.10	2.0	18	2;2	18	n	0.22	2.5	9	4;1	9	n	0.25	2.0	6	3;1	6	n	0.08	0.5	6	0;1	6	n	0.30	3.0	7	5;1	7	n	0.00	0.0	8	0;0	8	n	0.20	2.0	8	0;4	8	n	0.31	4.5	10	4;5	10	y	ENSMUSG00000022847.16	Thpo	chr16	protein_coding	thrombopoietin
novel_NIR_7408	chr16	20544646	20545056	-	20544635	20545056	A3SS	ENSMUST00000231826.2	novel	0.14	1	6	1	6	n	0.00	0	11	0	11	n	0.22	4	14	4	14	y	0.00	0	6	0	6	n	0.14	3	18	3	18	n	0.31	4	9	4	9	y	0.33	3	6	3	6	y	0.25	2	6	2	6	y	0.46	6	7	6	7	y	0.20	2	8	2	8	y	0.00	0	8	0	8	n	0.23	3	10	3	10	y	ENSMUSG00000022847.16	Thpo	chr16	protein_coding	thrombopoietin
novel_NIR_7409	chr16	20544820	20545056	-	20544635	20545056	A3SS	ENSMUST00000231826.2	novel	0.45	5	6	5	6	n	0.75	33	11	33	11	y	0.18	3	14	3	14	n	0.60	9	6	9	6	n	0.62	29	18	29	18	n	0.64	16	9	16	9	n	0.81	26	6	26	6	n	0.00	0	6	0	6	n	0.59	10	7	10	7	n	0.75	24	8	24	8	y	0.64	14	8	14	8	y	0.67	20	10	20	10	n	ENSMUSG00000022847.16	Thpo	chr16	protein_coding	thrombopoietin
novel_NIR_7410	chr16	20544820	20545056	-	20544832	20545056	A3SS	ENSMUST00000115437.4	novel	0.13	5	33	5	33	n	0.46	33	38	33	38	y	0.06	3	45	3	45	n	0.23	9	30	9	30	y	0.32	29	63	29	63	y	0.26	16	46	16	46	y	0.34	26	50	26	50	y	0.00	0	42	0	42	n	0.17	10	49	10	49	y	0.26	24	67	24	67	y	0.25	14	43	14	43	y	0.28	20	52	20	52	y	ENSMUSG00000022847.16	Thpo	chr16	protein_coding	thrombopoietin
novel_NIR_7411	chr16	20544851	20545056	-	20544635	20545056	A3SS	ENSMUST00000231826.2	novel	0.14	1	6	1	6	n	0.27	4	11	4	11	y	0.33	7	14	7	14	n	0.00	0	6	0	6	n	0.00	0	18	0	18	n	0.36	5	9	5	9	n	0.00	0	6	0	6	n	0.40	4	6	4	6	y	0.12	1	7	1	7	n	0.20	2	8	2	8	y	0.00	0	8	0	8	n	0.41	7	10	7	10	n	ENSMUSG00000022847.16	Thpo	chr16	protein_coding	thrombopoietin
novel_NIR_7412	chr16	20544888	20545056	-	20544635	20545056	A3SS	ENSMUST00000231826.2	novel	0.00	0	6	0	6	n	0.15	2	11	2	11	y	0.22	4	14	4	14	n	0.25	2	6	2	6	n	0.10	2	18	2	18	n	0.10	1	9	1	9	n	0.14	1	6	1	6	n	0.14	1	6	1	6	n	0.12	1	7	1	7	n	0.00	0	8	0	8	n	0.33	4	8	4	8	y	0.33	5	10	5	10	n	ENSMUSG00000022847.16	Thpo	chr16	protein_coding	thrombopoietin
novel_NIR_7413	chr16	20547536	20547814	-	20547683	20547814	A3SS	ENSMUST00000232217.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022847.16	Thpo	chr16	protein_coding	thrombopoietin
novel_NIR_7414	chr16	20547544	20547814	-	20547683	20547814	A3SS	ENSMUST00000232217.2	novel	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000022847.16	Thpo	chr16	protein_coding	thrombopoietin
novel_NIR_7415	chr16	20547967	20548874	-	20547967	20553012	A5SS	ENSMUST00000115437.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	8	0	8	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000022847.16	Thpo	chr16	protein_coding	thrombopoietin
novel_NIR_7416	chr16	20557566	20557664	+	20557566	20557861	A3SS	ENSMUST00000232104.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000006958.15	Chrd	chr16	protein_coding	chordin
novel_NIR_7417	chr16	20557566	20557717	+	20557566	20557861	A3SS	ENSMUST00000232104.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000006958.15	Chrd	chr16	protein_coding	chordin
novel_NIR_7418	chr16	20558260	20559940	+	20558260;20558806	20558704;20559940	ES	ENSMUST00000007171.13	novel	0.18	3	14.0	3	9;19	y	0.06	1	17.0	1	15;19	n	0.22	2	7.0	2	11;3	y	0.10	1	9.5	1	8;11	n	0.17	5	24.5	5	28;21	y	0.00	0	5.0	0	4;6	n	0.04	1	23.0	1	31;15	n	0.11	1	8.5	1	7;10	n	0.00	0	10.0	0	11;9	n	0.00	0	14.0	0	15;13	n	0.00	0	15.5	0	18;13	n	0.21	3	11.0	3	12;10	y	ENSMUSG00000006958.15	Chrd	chr16	protein_coding	chordin
novel_NIR_7419	chr16	20558260	20559940	+	20558806	20559940	A5SS	ENSMUST00000151150.2	novel	0.14	3	19	3	19	n	0.05	1	19	1	19	n	0.40	2	3	2	3	y	0.08	1	11	1	11	n	0.19	5	21	5	21	y	0.00	0	6	0	6	n	0.06	1	15	1	15	n	0.09	1	10	1	10	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	13	0	13	n	0.23	3	10	3	10	y	ENSMUSG00000006958.15	Chrd	chr16	protein_coding	chordin
novel_NIR_7420	chr16	20558806	20559943	+	20558806	20559940	A3SS	ENSMUST00000007171.13	novel	0.10	2	19	2	19	n	0.00	0	19	0	19	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	21	0	21	n	0.00	0	6	0	6	n	0.21	4	15	4	15	y	0.23	3	10	3	10	y	0.10	1	9	1	9	n	0.00	0	13	0	13	n	0.19	3	13	3	13	y	0.00	0	10	0	10	n	ENSMUSG00000006958.15	Chrd	chr16	protein_coding	chordin
novel_NIR_7421	chr16	20560345	20560672	+	20560345	20560675	A3SS	ENSMUST00000007171.13	novel	0.11	3	25	3	25	n	0.09	4	39	4	39	n	0.25	4	12	4	12	y	0.10	2	19	2	19	n	0.06	3	44	3	44	n	0.00	0	16	0	16	n	0.12	4	30	4	30	n	0.11	2	16	2	16	n	0.00	0	20	0	20	n	0.07	2	26	2	26	n	0.04	1	22	1	22	n	0.03	1	33	1	33	n	ENSMUSG00000006958.15	Chrd	chr16	protein_coding	chordin
novel_NIR_7422	chr16	21614725	21620031	+	21614725	21619465	3pMXE	ENSMUST00000231300.2	novel	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.08	1	11	1	11	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	21	0	21	n	0.19	3	13	3	13	y	0.00	0	10	0	10	n	ENSMUSG00000097290.10	1300002E11Rik	chr16	lncRNA	RIKEN cDNA 1300002E11 gene
novel_NIR_7423	chr16	21614725	21620031	+	21614725	21710634	A3SS	ENSMUST00000231988.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000033618.8	Map3k13	chr16	protein_coding	mitogen-activated protein kinase kinase kinase 13
novel_NIR_7424	chr16	21614725	21620031	+	21614725;21619586	21619465;21620031	ES	ENSMUST00000209728.2	novel	0.00	0	9.5	0	8;11	n	0.00	0	9.0	0	4;14	n	0.00	0	20.0	0	9;31	n	0.00	0	17.5	0	14;21	n	0.07	1	13.5	1	11;16	n	0.00	0	11.5	0	11;12	n	0.00	0	16.0	0	12;20	n	0.00	0	10.5	0	5;16	n	0.00	0	8.5	0	5;12	n	0.00	0	20.5	0	21;20	n	0.21	3	11.0	3	13;9	y	0.00	0	15.5	0	10;21	n	ENSMUSG00000097290.10	1300002E11Rik	chr16	lncRNA	RIKEN cDNA 1300002E11 gene
novel_NIR_7425	chr16	21614725	21620031	+	21614725;21619586	21619525;21620031	ES	ENSMUST00000181780.9	novel	0.00	0	10.0	0	9;11	n	0.00	0	14.0	0	14;14	n	0.00	0	24.5	0	18;31	n	0.00	0	15.0	0	9;21	n	0.07	1	13.0	1	10;16	n	0.00	0	11.0	0	10;12	n	0.00	0	17.0	0	14;20	n	0.00	0	15.0	0	14;16	n	0.00	0	13.0	0	14;12	n	0.00	0	16.5	0	13;20	n	0.22	3	10.5	3	12;9	y	0.00	0	14.0	0	7;21	n	ENSMUSG00000097290.10	1300002E11Rik	chr16	lncRNA	RIKEN cDNA 1300002E11 gene
novel_NIR_7426	chr16	21619586	21620035	+	21619586	21624062	A3SS	ENSMUST00000209429.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000097290.10	1300002E11Rik	chr16	lncRNA	RIKEN cDNA 1300002E11 gene
novel_NIR_7427	chr16	21620106	21627428	+	21614725	21627428	A5SS	ENSMUST00000209449.2	novel	0.17	5	25	5	25	y	0.13	4	26	4	26	n	0.11	3	25	3	25	n	0.12	4	29	4	29	n	0.00	0	32	0	32	n	0.07	1	13	1	13	n	0.00	0	31	0	31	n	0.00	0	13	0	13	n	0.00	0	25	0	25	n	0.00	0	34	0	34	n	0.03	1	32	1	32	n	0.19	4	17	4	17	y	ENSMUSG00000097290.10	1300002E11Rik	chr16	lncRNA	RIKEN cDNA 1300002E11 gene
novel_NIR_7428	chr16	21620106	21627428	+	21620106	21621703	3pMXE	ENSMUST00000181780.9	novel	0.50	5	5	5	5	y	0.31	4	9	4	9	y	0.09	3	29	3	29	n	0.29	4	10	4	10	y	0.00	0	16	0	16	n	0.09	1	10	1	10	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.10	1	9	1	9	n	0.21	4	15	4	15	y	ENSMUSG00000097290.10	1300002E11Rik	chr16	lncRNA	RIKEN cDNA 1300002E11 gene
novel_NIR_7429	chr16	21620106	21627428	+	21620106;21621847	21621705;21627428	ES	ENSMUST00000209728.2	novel	0.48	5	5.5	5	3;8	y	0.89	4	0.5	4	1;0	y	0.35	3	5.5	3	5;6	y	0.67	4	2.0	4	2;2	y	0.00	0	5.5	0	6;5	n	0.33	1	2.0	1	1;3	n	0.00	0	6.5	0	6;7	n	0.00	0	1.0	0	1;1	n	0.00	0	4.0	0	3;5	n	0.00	0	2.5	0	3;2	n	0.67	1	0.5	1	0;1	n	0.73	4	1.5	4	2;1	y	ENSMUSG00000097290.10	1300002E11Rik	chr16	lncRNA	RIKEN cDNA 1300002E11 gene
novel_NIR_7430	chr16	21620106	21627428	+	21625869	21627428	A5SS&ES	ENSMUST00000211443.2	novel	0.56	5	4	5	4	y	1.00	4	0	4	0	y	0.50	3	3	3	3	y	0.57	4	3	4	3	y	0.00	0	7	0	7	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.12	1	7	1	7	n	0.33	4	8	4	8	y	ENSMUSG00000097290.10	1300002E11Rik	chr16	lncRNA	RIKEN cDNA 1300002E11 gene
novel_NIR_7431	chr16	21724669	21725199	+	21724669	21725195	A3SS	ENSMUST00000231988.2	novel	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	ENSMUSG00000033618.8	Map3k13	chr16	protein_coding	mitogen-activated protein kinase kinase kinase 13
novel_NIR_7432	chr16	21850914	21852121	+	21850914	21854283	A3SS	ENSMUST00000232263.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022855.10	Senp2	chr16	protein_coding	SUMO/sentrin specific peptidase 2
novel_NIR_7433	chr16	21850914	21857287	+	21850914;21855396	21854283;21857287	ES	ENSMUST00000232263.2	novel	0.00	0	20.5	0	0;41	n	0.23	5	17.0	5	0;34	y	0.13	3	20.0	3	0;40	n	0.11	2	16.0	2	0;32	n	0.14	4	24.5	4	0;49	n	0.00	0	12.0	0	0;24	n	0.14	4	24.5	4	0;49	n	0.00	0	20.0	0	0;40	n	0.00	0	14.0	0	0;28	n	0.05	1	17.5	1	0;35	n	0.17	3	14.5	3	0;29	y	0.12	3	21.0	3	0;42	n	ENSMUSG00000022855.10	Senp2	chr16	protein_coding	SUMO/sentrin specific peptidase 2
novel_NIR_7434	chr16	21898946	21900484	-	21898951	21900484	A3SS	ENSMUST00000100052.11	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	2	4	2	4	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000033581.18	Igf2bp2	chr16	protein_coding	insulin-like growth factor 2 mRNA binding protein 2
novel_NIR_7435	chr16	22641329	22644516	-	22637278	22644516	A3SS	ENSMUST00000232555.2	novel	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000004462.8	Tbccd1	chr16	protein_coding	TBCC domain containing 1
novel_NIR_7436	chr16	22652738	22660479	-	22658000	22660479	3pMXE	ENSMUST00000231267.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000004462.8	Tbccd1	chr16	protein_coding	TBCC domain containing 1
novel_NIR_7437	chr16	22660857	22673492	-	22660857	22663113	5pMXE	ENSMUST00000231513.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000004462.8	Tbccd1	chr16	protein_coding	TBCC domain containing 1
novel_NIR_7438	chr16	22660857	22673492	-	22660857	22676245	A5SS	ENSMUST00000232075.2	novel	0.00	0	5	0	5	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000004462.8	Tbccd1	chr16	protein_coding	TBCC domain containing 1
novel_NIR_7439	chr16	22690513	22690659	+	22690513	22690890	A3SS	ENSMUST00000178320.2	novel	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	18	0	18	n	0.00	0	20	0	20	n	0.00	0	9	0	9	n	0.24	4	13	4	13	y	0.00	0	12	0	12	n	0.00	0	14	0	14	n	ENSMUSG00000004460.18	Dnajb11	chr16	protein_coding	DnaJ heat shock protein family (Hsp40) member B11
novel_NIR_7440	chr16	22690513	22690659	+	22690513	22697153	A3SS	ENSMUST00000166487.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.24	4	13	4	13	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000004460.18	Dnajb11	chr16	protein_coding	DnaJ heat shock protein family (Hsp40) member B11
novel_NIR_7441	chr16	22690513	22690901	+	22690513	22690890	A3SS	ENSMUST00000178320.2	novel	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.43	12	16	12	16	y	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.21	3	11	3	11	y	0.18	4	18	4	18	y	0.00	0	20	0	20	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	ENSMUSG00000004460.18	Dnajb11	chr16	protein_coding	DnaJ heat shock protein family (Hsp40) member B11
novel_NIR_7442	chr16	22690513	22690901	+	22690513	22697153	A3SS	ENSMUST00000166487.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	12	0	12	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	13	0	13	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000004460.18	Dnajb11	chr16	protein_coding	DnaJ heat shock protein family (Hsp40) member B11
novel_NIR_7443	chr16	22695288	22705779	-	22695288;22702989	22702939;22705779	ES	ENSMUST00000231692.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0.0	4	0;0	y	0.00	0	1.5	0	0;3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000116831.2	Gm30505	chr16	lncRNA	predicted gene, 30505
novel_NIR_7444	chr16	22696499	22705779	-	22702989	22705779	A3SS&ES	ENSMUST00000231692.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000116831.2	Gm30505	chr16	lncRNA	predicted gene, 30505
novel_NIR_7445	chr16	22698238	22713075	+	22710219	22713075	5pMXE	ENSMUST00000231848.2	novel	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000022868.7	Ahsg	chr16	protein_coding	alpha-2-HS-glycoprotein
novel_NIR_7446	chr16	22698238	22713075	+	22710240	22713075	5pMXE	ENSMUST00000231328.2	novel	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	0.07	1	13	1	13	n	ENSMUSG00000022868.7	Ahsg	chr16	protein_coding	alpha-2-HS-glycoprotein
novel_NIR_7447	chr16	22698238	22713075	+	22710928	22713075	5pMXE	ENSMUST00000232098.2	novel	0.06	2	32	2	32	n	0.07	3	38	3	38	n	0.17	7	35	7	35	y	0.00	0	27	0	27	n	0.00	0	63	0	63	n	0.04	1	24	1	24	n	0.00	0	30	0	30	n	0.00	0	46	0	46	n	0.00	0	34	0	34	n	0.09	5	53	5	53	n	0.00	0	37	0	37	n	0.02	1	42	1	42	n	ENSMUSG00000022868.7	Ahsg	chr16	protein_coding	alpha-2-HS-glycoprotein
novel_NIR_7448	chr16	22698238	22713075	+	22711299	22713075	5pMXE	ENSMUST00000232556.2	novel	0.50	2	2	2	2	y	1.00	3	0	3	0	y	0.78	7	2	7	2	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.56	5	4	5	4	y	0.00	0	4	0	4	n	0.25	1	3	1	3	n	ENSMUSG00000022868.7	Ahsg	chr16	protein_coding	alpha-2-HS-glycoprotein
novel_NIR_7449	chr16	22710219	22710680	+	22710219	22713075	A3SS	ENSMUST00000231848.2	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000022868.7	Ahsg	chr16	protein_coding	alpha-2-HS-glycoprotein
novel_NIR_7450	chr16	22710219	22710847	+	22710219	22713075	A3SS	ENSMUST00000231848.2	novel	1.00	107	0	107	0	y	1.00	147	0	147	0	y	1.00	134	0	134	0	y	1.00	121	0	121	0	y	1.00	75	0	75	0	n	1.00	75	0	75	0	y	1.00	32	0	32	0	n	1.00	149	0	149	0	y	1.00	143	0	143	0	y	1.00	253	0	253	0	y	1.00	152	0	152	0	y	1.00	140	0	140	0	y	ENSMUSG00000022868.7	Ahsg	chr16	protein_coding	alpha-2-HS-glycoprotein
novel_NIR_7451	chr16	22710219	22710901	+	22710219	22713075	A3SS	ENSMUST00000231848.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	35	0	35	0	y	ENSMUSG00000022868.7	Ahsg	chr16	protein_coding	alpha-2-HS-glycoprotein
novel_NIR_7452	chr16	22710928	22711027	+	22710928	22713075	A3SS	ENSMUST00000232098.2	novel	0.85	182	32	182	32	y	0.78	131	38	131	38	y	0.86	207	35	207	35	y	0.86	172	27	172	27	y	0.86	386	63	386	63	n	0.87	155	24	155	24	y	0.90	258	30	258	30	n	0.55	56	46	56	46	y	0.86	202	34	202	34	y	0.72	135	53	135	53	y	0.82	166	37	166	37	y	0.86	254	42	254	42	y	ENSMUSG00000022868.7	Ahsg	chr16	protein_coding	alpha-2-HS-glycoprotein
novel_NIR_7453	chr16	22710928	22711039	+	22710928	22713075	A3SS	ENSMUST00000232098.2	novel	0.00	0	32	0	32	n	0.00	0	38	0	38	n	0.00	0	35	0	35	n	0.00	0	27	0	27	n	0.00	0	63	0	63	n	0.00	0	24	0	24	n	0.00	0	30	0	30	n	0.53	51	46	51	46	y	0.00	0	34	0	34	n	0.45	44	53	44	53	y	0.00	0	37	0	37	n	0.00	0	42	0	42	n	ENSMUSG00000022868.7	Ahsg	chr16	protein_coding	alpha-2-HS-glycoprotein
novel_NIR_7454	chr16	22712153	22713075	+	22710219	22713075	A5SS	ENSMUST00000231848.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022868.7	Ahsg	chr16	protein_coding	alpha-2-HS-glycoprotein
novel_NIR_7455	chr16	22712153	22713075	+	22710240	22713075	A5SS	ENSMUST00000231328.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	13	0	13	n	ENSMUSG00000022868.7	Ahsg	chr16	protein_coding	alpha-2-HS-glycoprotein
novel_NIR_7456	chr16	22712153	22713075	+	22711299	22713075	A5SS	ENSMUST00000232556.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	ENSMUSG00000022868.7	Ahsg	chr16	protein_coding	alpha-2-HS-glycoprotein
novel_NIR_7457	chr16	22738101	22747825	+	22737340	22747825	A5SS	ENSMUST00000170805.9	novel	0.00	0	7	0	7	n	0.30	3	7	3	7	y	0.69	40	18	40	18	y	0.25	2	6	2	6	y	0.50	13	13	13	13	y	0.46	11	13	11	13	y	0.58	7	5	7	5	y	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.31	5	11	5	11	y	0.00	0	7	0	7	n	0.00	0	5	0	5	n	ENSMUSG00000022871.14	Fetub	chr16	protein_coding	fetuin beta
novel_NIR_7458	chr16	22738101	22747825	+	22737344	22747825	A5SS	ENSMUST00000231768.2	novel	0.00	0	4	0	4	n	0.75	3	1	3	1	y	0.95	40	2	40	2	y	0.29	2	5	2	5	y	0.81	13	3	13	3	y	0.85	11	2	11	2	y	0.78	7	2	7	2	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.62	5	3	5	3	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000022871.14	Fetub	chr16	protein_coding	fetuin beta
novel_NIR_7459	chr16	22738101	22747825	+	22740625	22747825	5pMXE	ENSMUST00000167399.2	novel	0.00	0	49	0	49	n	0.05	3	60	3	60	n	0.41	40	57	40	57	y	0.04	2	48	2	48	n	0.21	13	49	13	49	y	0.26	11	32	11	32	y	0.10	7	65	7	65	n	0.00	0	43	0	43	n	0.00	0	56	0	56	n	0.06	5	75	5	75	n	0.00	0	44	0	44	n	0.00	0	74	0	74	n	ENSMUSG00000022871.14	Fetub	chr16	protein_coding	fetuin beta
novel_NIR_7460	chr16	22738101	22748383	+	22737344	22748383	A5SS	ENSMUST00000231880.2	novel	-	-	-	-	-	-	1.00	34	0	34	0	y	1.00	9	0	9	0	y	0.92	11	1	11	1	y	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	6	0	6	0	y	1.00	13	0	13	0	y	1.00	8	0	8	0	y	-	-	-	-	-	-	ENSMUSG00000022871.14	Fetub	chr16	protein_coding	fetuin beta
novel_NIR_7461	chr16	22738101	22748383	+	22739245	22748383	5pMXE	ENSMUST00000116625.10	novel	0.00	0	206	0	206	n	0.18	34	155	34	155	y	0.09	9	91	9	91	n	0.04	11	244	11	244	n	0.00	0	222	0	222	n	0.07	5	62	5	62	n	0.00	0	147	0	147	n	0.07	6	76	6	76	n	0.05	6	127	6	127	n	0.06	13	221	13	221	n	0.05	8	138	8	138	n	0.00	0	228	0	228	n	ENSMUSG00000022871.14	Fetub	chr16	protein_coding	fetuin beta
novel_NIR_7462	chr16	22739127	22747825	+	22737340	22747825	A5SS	ENSMUST00000170805.9	novel	0.00	0	7	0	7	n	0.12	1	7	1	7	n	0.00	0	18	0	18	n	0.25	2	6	2	6	y	0.00	0	13	0	13	n	0.00	0	13	0	13	n	0.17	1	5	1	5	n	0.07	1	14	1	14	n	0.00	0	11	0	11	n	0.39	7	11	7	11	y	0.12	1	7	1	7	n	0.64	9	5	9	5	y	ENSMUSG00000022871.14	Fetub	chr16	protein_coding	fetuin beta
novel_NIR_7463	chr16	22739127	22747825	+	22737344	22747825	A5SS	ENSMUST00000231768.2	novel	0.00	0	4	0	4	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.70	7	3	7	3	y	0.25	1	3	1	3	n	0.69	9	4	9	4	y	ENSMUSG00000022871.14	Fetub	chr16	protein_coding	fetuin beta
novel_NIR_7464	chr16	22739127	22748383	+	22737344	22748383	A5SS	ENSMUST00000231880.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.80	4	1	4	1	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	6	0	6	0	y	ENSMUSG00000022871.14	Fetub	chr16	protein_coding	fetuin beta
novel_NIR_7465	chr16	22739138	22747825	+	22737340	22747825	A5SS	ENSMUST00000170805.9	novel	0.53	8	7	8	7	y	0.56	9	7	9	7	y	0.38	11	18	11	18	y	0.33	3	6	3	6	y	0.38	8	13	8	13	y	0.00	0	13	0	13	n	0.38	3	5	3	5	y	0.22	4	14	4	14	y	0.54	13	11	13	11	y	0.59	16	11	16	11	y	0.65	13	7	13	7	y	0.79	19	5	19	5	y	ENSMUSG00000022871.14	Fetub	chr16	protein_coding	fetuin beta
novel_NIR_7466	chr16	22739138	22747825	+	22737344	22747825	A5SS	ENSMUST00000231768.2	novel	0.67	8	4	8	4	y	0.90	9	1	9	1	y	0.85	11	2	11	2	y	0.38	3	5	3	5	y	0.73	8	3	8	3	y	0.00	0	2	0	2	n	0.60	3	2	3	2	y	0.57	4	3	4	3	y	0.76	13	4	13	4	y	0.84	16	3	16	3	y	0.81	13	3	13	3	y	0.83	19	4	19	4	y	ENSMUSG00000022871.14	Fetub	chr16	protein_coding	fetuin beta
novel_NIR_7467	chr16	22739138	22747825	+	22740625	22747825	A5SS&ES	ENSMUST00000232097.2	novel	0.14	8	49	8	49	n	0.13	9	60	9	60	n	0.16	11	57	11	57	y	0.06	3	48	3	48	n	0.14	8	49	8	49	n	0.00	0	32	0	32	n	0.04	3	65	3	65	n	0.09	4	43	4	43	n	0.19	13	56	13	56	y	0.18	16	75	16	75	y	0.23	13	44	13	44	y	0.20	19	74	19	74	y	ENSMUSG00000022871.14	Fetub	chr16	protein_coding	fetuin beta
novel_NIR_7468	chr16	22740625	22748383	+	22737344	22748383	A5SS	ENSMUST00000231880.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	13	0	13	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	13	0	13	0	y	ENSMUSG00000022871.14	Fetub	chr16	protein_coding	fetuin beta
novel_NIR_7469	chr16	22748041	22748383	+	22737344	22748383	A5SS	ENSMUST00000231880.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	17	0	17	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022871.14	Fetub	chr16	protein_coding	fetuin beta
novel_NIR_7470	chr16	22748041	22748383	+	22739245	22748383	A5SS	ENSMUST00000116625.10	novel	0.00	0	206	0	206	n	0.00	0	155	0	155	n	0.00	0	91	0	91	n	0.00	0	244	0	244	n	0.00	0	222	0	222	n	0.00	0	62	0	62	n	0.00	0	147	0	147	n	0.18	17	76	17	76	y	0.00	0	127	0	127	n	0.00	0	221	0	221	n	0.00	0	138	0	138	n	0.00	0	228	0	228	n	ENSMUSG00000022871.14	Fetub	chr16	protein_coding	fetuin beta
novel_NIR_7471	chr16	22774956	22776177	+	22774956	22775692	3pMXE	ENSMUST00000232422.2	novel	0.19	5	22	5	22	y	0.20	6	24	6	24	y	0.10	3	28	3	28	n	0.18	6	28	6	28	y	0.07	5	63	5	63	n	0.00	0	22	0	22	n	0.30	13	30	13	30	y	0.26	7	20	7	20	y	0.23	5	17	5	17	y	0.14	5	30	5	30	n	0.03	1	32	1	32	n	0.17	7	33	7	33	y	ENSMUSG00000022877.10	Hrg	chr16	protein_coding	histidine-rich glycoprotein
novel_NIR_7472	chr16	22774956	22779492	+	22774956	22775692	3pMXE	ENSMUST00000232422.2	novel	0.33	11	22	11	22	y	0.20	6	24	6	24	y	0.00	0	28	0	28	n	0.28	11	28	11	28	y	0.00	0	63	0	63	n	0.00	0	22	0	22	n	0.00	0	30	0	30	n	0.00	0	20	0	20	n	0.32	8	17	8	17	y	0.39	19	30	19	30	y	0.22	9	32	9	32	y	0.00	0	33	0	33	n	ENSMUSG00000022877.10	Hrg	chr16	protein_coding	histidine-rich glycoprotein
novel_NIR_7473	chr16	22806253	22806995	-	22806375	22806995	A3SS	ENSMUST00000039338.13	novel	0.06	5	76	5	76	n	0.11	11	89	11	89	n	0.09	7	70	7	70	n	0.03	2	60	2	60	n	0.05	5	91	5	91	n	0.17	9	43	9	43	y	0.06	5	81	5	81	n	0.11	7	58	7	58	n	0.02	1	64	1	64	n	0.05	5	99	5	99	n	0.01	1	70	1	70	n	0.03	3	86	3	86	n	ENSMUSG00000060459.15	Kng2	chr16	protein_coding	kininogen 2
novel_NIR_7474	chr16	22816038	22818564	-	22815859	22818564	A3SS	ENSMUST00000231872.2	novel	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.30	7	16	7	16	y	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.45	10	12	10	12	y	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	ENSMUSG00000060459.15	Kng2	chr16	protein_coding	kininogen 2
novel_NIR_7475	chr16	22847554	22848103	-	22847602	22848103	A3SS	ENSMUST00000232459.2	novel	0.00	0	5	0	5	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.38	3	5	3	5	y	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	10	0	10	n	ENSMUSG00000060459.15	Kng2	chr16	protein_coding	kininogen 2
novel_NIR_7476	chr16	22847602	22848336	-	22847602	22848103	5pMXE	ENSMUST00000232459.2	novel	0.00	0	5	0	5	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.29	2	5	2	5	y	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.25	2	6	2	6	y	0.00	0	9	0	9	n	1.00	5	0	5	0	y	0.33	5	10	5	10	y	ENSMUSG00000060459.15	Kng2	chr16	protein_coding	kininogen 2
novel_NIR_7477	chr16	22847688	22848103	-	22847602	22848103	A3SS	ENSMUST00000232459.2	novel	0.00	0	5	0	5	n	0.67	14	7	14	7	y	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	10	0	10	n	ENSMUSG00000060459.15	Kng2	chr16	protein_coding	kininogen 2
novel_NIR_7478	chr16	22931211	22931917	+	22930646	22931917	A5SS	ENSMUST00000023599.13	novel	0.06	26	431	26	431	n	0.06	23	379	23	379	n	0.22	53	191	53	191	y	0.06	31	498	31	498	n	0.06	24	379	24	379	n	0.09	13	128	13	128	n	0.05	34	641	34	641	n	0.09	13	131	13	131	n	0.04	17	437	17	437	n	0.06	39	666	39	666	n	0.04	24	524	24	524	n	0.07	47	616	47	616	n	ENSMUSG00000022884.17	Eif4a2	chr16	protein_coding	eukaryotic translation initiation factor 4A2
novel_NIR_7479	chr16	22931211	22931917	+	22931207	22931917	A5SS	ENSMUST00000187168.7	novel	0.49	26	27	26	27	y	0.47	23	26	23	26	y	0.54	53	45	53	45	y	0.50	31	31	31	31	y	0.49	24	25	24	25	y	0.59	13	9	13	9	y	0.49	34	35	34	35	y	0.41	13	19	13	19	y	0.38	17	28	17	28	y	0.51	39	37	39	37	y	0.56	24	19	24	19	y	0.64	47	27	47	27	y	ENSMUSG00000022884.17	Eif4a2	chr16	protein_coding	eukaryotic translation initiation factor 4A2
novel_NIR_7480	chr16	23012317	23016157	+	23012317	23022241	A3SS	ENSMUST00000232204.2	novel	0.08	2	24	2	24	n	0.00	0	26	0	26	n	0.00	0	2	0	2	n	0.14	4	25	4	25	n	0.10	2	19	2	19	n	-	-	-	-	-	-	0.12	3	22	3	22	n	0.00	0	1	0	1	n	0.50	6	6	6	6	y	0.20	9	37	9	37	y	0.15	5	28	5	28	y	0.17	6	29	6	29	y	ENSMUSG00000068463.5	B630019A10Rik	chr16	lncRNA	RIKEN cDNA B630019A10 gene
novel_NIR_7481	chr16	23012317	23016286	+	23012317	23022241	A3SS	ENSMUST00000232204.2	novel	0.11	3	24	3	24	n	0.04	1	26	1	26	n	0.00	0	2	0	2	n	0.17	5	25	5	25	y	0.24	6	19	6	19	y	-	-	-	-	-	-	0.00	0	22	0	22	n	0.00	0	1	0	1	n	0.45	5	6	5	6	y	0.18	8	37	8	37	y	0.20	7	28	7	28	y	0.12	4	29	4	29	n	ENSMUSG00000068463.5	B630019A10Rik	chr16	lncRNA	RIKEN cDNA B630019A10 gene
novel_NIR_7482	chr16	23012317	23037513	+	22994153	23037513	A5SS	ENSMUST00000149488.2	novel	1.00	5	0	5	0	y	1.00	7	0	7	0	y	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000068463.5	B630019A10Rik	chr16	lncRNA	RIKEN cDNA B630019A10 gene
novel_NIR_7483	chr16	23012317	23037513	+	23012317	23022241	3pMXE	ENSMUST00000232204.2	novel	0.17	5	24	5	24	y	0.21	7	26	7	26	y	0.33	1	2	1	2	n	0.17	5	25	5	25	y	0.14	3	19	3	19	n	-	-	-	-	-	-	0.15	4	22	4	22	y	0.00	0	1	0	1	n	0.14	1	6	1	6	n	0.10	4	37	4	37	n	0.03	1	28	1	28	n	0.00	0	29	0	29	n	ENSMUSG00000068463.5	B630019A10Rik	chr16	lncRNA	RIKEN cDNA B630019A10 gene
novel_NIR_7484	chr16	23019964	23037513	+	22994153	23037513	A5SS	ENSMUST00000149488.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000068463.5	B630019A10Rik	chr16	lncRNA	RIKEN cDNA B630019A10 gene
novel_NIR_7485	chr16	23019974	23022241	+	23012317	23022241	A5SS	ENSMUST00000232204.2	novel	0.00	0	24	0	24	n	0.00	0	26	0	26	n	0.00	0	2	0	2	n	0.04	1	25	1	25	n	0.00	0	19	0	19	n	-	-	-	-	-	-	0.00	0	22	0	22	n	0.00	0	1	0	1	n	0.25	2	6	2	6	y	0.00	0	37	0	37	n	0.00	0	28	0	28	n	0.00	0	29	0	29	n	ENSMUSG00000068463.5	B630019A10Rik	chr16	lncRNA	RIKEN cDNA B630019A10 gene
novel_NIR_7486	chr16	23109958	23136314	+	23088458	23136314	A5SS	ENSMUST00000128050.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022885.17	St6gal1	chr16	protein_coding	beta galactoside alpha 2,6 sialyltransferase 1
novel_NIR_7487	chr16	23126938	23136314	+	23088458	23136314	A5SS	ENSMUST00000128050.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022885.17	St6gal1	chr16	protein_coding	beta galactoside alpha 2,6 sialyltransferase 1
novel_NIR_7488	chr16	23346356	23361941	+	23346356	23373448	A3SS	ENSMUST00000210795.2	novel	-	-	-	-	-	-	0.25	2	6	2	6	y	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	ENSMUSG00000109783.2	Gm45338	chr16	lncRNA	predicted gene 45338
novel_NIR_7489	chr16	23346356	23361941	+	23346356	23378522	A3SS	ENSMUST00000209198.2	novel	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000109783.2	Gm45338	chr16	lncRNA	predicted gene 45338
novel_NIR_7490	chr16	23346356	23361941	+	23346356	23428679	A3SS	ENSMUST00000209422.2	novel	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000033355.7	Rtp4	chr16	protein_coding	receptor transporter protein 4
novel_NIR_7491	chr16	23346356	23373427	+	23346356	23373448	A3SS	ENSMUST00000210795.2	novel	1.00	1	0	1	0	n	0.25	2	6	2	6	y	0.00	0	2	0	2	n	0.11	1	8	1	8	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	1.00	3	0	3	0	y	0.25	1	3	1	3	n	0.50	2	2	2	2	y	0.11	1	8	1	8	n	0.00	0	4	0	4	n	ENSMUSG00000109783.2	Gm45338	chr16	lncRNA	predicted gene 45338
novel_NIR_7492	chr16	23346356	23373427	+	23346356	23378522	A3SS	ENSMUST00000209198.2	novel	1.00	1	0	1	0	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.67	2	1	2	1	y	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000109783.2	Gm45338	chr16	lncRNA	predicted gene 45338
novel_NIR_7493	chr16	23346356	23373427	+	23346356	23428679	A3SS	ENSMUST00000209422.2	novel	0.50	1	1	1	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	3	0	3	0	y	0.50	1	1	1	1	n	0.25	2	6	2	6	y	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000033355.7	Rtp4	chr16	protein_coding	receptor transporter protein 4
novel_NIR_7494	chr16	23346356	23373445	+	23346356	23373448	A3SS	ENSMUST00000210795.2	novel	-	-	-	-	-	-	0.14	1	6	1	6	n	0.60	3	2	3	2	y	0.00	0	8	0	8	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	ENSMUSG00000109783.2	Gm45338	chr16	lncRNA	predicted gene 45338
novel_NIR_7495	chr16	23346356	23373445	+	23346356	23378522	A3SS	ENSMUST00000209198.2	novel	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000109783.2	Gm45338	chr16	lncRNA	predicted gene 45338
novel_NIR_7496	chr16	23346356	23373445	+	23346356	23428679	A3SS	ENSMUST00000209422.2	novel	0.00	0	1	0	1	n	0.50	1	1	1	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.14	1	6	1	6	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000033355.7	Rtp4	chr16	protein_coding	receptor transporter protein 4
novel_NIR_7497	chr16	23346356	23406916	+	23346356	23378522	3pMXE	ENSMUST00000209198.2	novel	1.00	2	0	2	0	y	0.67	2	1	2	1	y	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	ENSMUSG00000109783.2	Gm45338	chr16	lncRNA	predicted gene 45338
novel_NIR_7498	chr16	23346356	23406916	+	23346356	23428679	A3SS	ENSMUST00000209422.2	novel	0.67	2	1	2	1	y	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.20	1	4	1	4	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.14	1	6	1	6	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	ENSMUSG00000033355.7	Rtp4	chr16	protein_coding	receptor transporter protein 4
novel_NIR_7499	chr16	23346356	23419965	+	23346356	23378522	3pMXE	ENSMUST00000209198.2	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	1.00	2	0	2	0	y	ENSMUSG00000109783.2	Gm45338	chr16	lncRNA	predicted gene 45338
novel_NIR_7500	chr16	23346356	23419965	+	23346356	23428679	A3SS	ENSMUST00000209422.2	novel	0.50	1	1	1	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.20	1	4	1	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.67	2	1	2	1	y	1.00	2	0	2	0	y	ENSMUSG00000033355.7	Rtp4	chr16	protein_coding	receptor transporter protein 4
novel_NIR_7501	chr16	23346356	23421185	+	23346356	23378522	3pMXE	ENSMUST00000209198.2	novel	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	ENSMUSG00000109783.2	Gm45338	chr16	lncRNA	predicted gene 45338
novel_NIR_7502	chr16	23346356	23421185	+	23346356	23428679	A3SS	ENSMUST00000209422.2	novel	0.00	0	1	0	1	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	ENSMUSG00000033355.7	Rtp4	chr16	protein_coding	receptor transporter protein 4
novel_NIR_7503	chr16	23346356	23421185	+	23420571	23421185	5pMXE	ENSMUST00000211569.2	novel	0.00	0	8	0	8	n	0.11	1	8	1	8	n	0.50	1	1	1	1	n	0.20	1	4	1	4	n	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.17	1	5	1	5	n	ENSMUSG00000033355.7	Rtp4	chr16	protein_coding	receptor transporter protein 4
novel_NIR_7504	chr16	23353549	23353721	+	23353549	23362373	A3SS	ENSMUST00000211460.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.50	2	2	2	2	y	-	-	-	-	-	-	0.60	3	2	3	2	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000109783.2	Gm45338	chr16	lncRNA	predicted gene 45338
novel_NIR_7505	chr16	23353549	23353721	+	23353549	23373448	A3SS	ENSMUST00000210371.2	novel	0.00	0	4	0	4	n	0.25	2	6	2	6	y	0.18	2	9	2	9	y	0.00	0	2	0	2	n	0.18	3	14	3	14	y	0.00	0	3	0	3	n	0.21	3	11	3	11	y	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.14	1	6	1	6	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	ENSMUSG00000109783.2	Gm45338	chr16	lncRNA	predicted gene 45338
novel_NIR_7506	chr16	23353549	23361941	+	23353549	23362373	A3SS	ENSMUST00000211460.2	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	0.50	2	2	2	2	n	1.00	2	0	2	0	y	0.50	2	2	2	2	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	n	0.67	2	1	2	1	n	ENSMUSG00000109783.2	Gm45338	chr16	lncRNA	predicted gene 45338
novel_NIR_7507	chr16	23353549	23361941	+	23353549	23373448	A3SS	ENSMUST00000210371.2	novel	0.50	4	4	4	4	y	0.00	0	6	0	6	n	0.18	2	9	2	9	y	0.50	2	2	2	2	y	0.12	2	14	2	14	n	0.25	1	3	1	3	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.14	1	6	1	6	n	0.30	3	7	3	7	y	0.22	2	7	2	7	y	ENSMUSG00000109783.2	Gm45338	chr16	lncRNA	predicted gene 45338
novel_NIR_7508	chr16	23353549	23361944	+	23353549	23362373	A3SS	ENSMUST00000211460.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000109783.2	Gm45338	chr16	lncRNA	predicted gene 45338
novel_NIR_7509	chr16	23353549	23361944	+	23353549	23373448	A3SS	ENSMUST00000210371.2	novel	0.33	2	4	2	4	y	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	14	0	14	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.14	1	6	1	6	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	ENSMUSG00000109783.2	Gm45338	chr16	lncRNA	predicted gene 45338
novel_NIR_7510	chr16	23353549	23373427	+	23353549	23362373	A3SS&ES	ENSMUST00000211460.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.60	3	2	3	2	y	1.00	4	0	4	0	y	0.67	4	2	4	2	y	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	0.67	2	1	2	1	y	ENSMUSG00000109783.2	Gm45338	chr16	lncRNA	predicted gene 45338
novel_NIR_7511	chr16	23353549	23373427	+	23353549	23373448	A3SS	ENSMUST00000210371.2	novel	0.33	2	4	2	4	y	0.00	0	6	0	6	n	0.25	3	9	3	9	y	0.67	4	2	4	2	y	0.22	4	14	4	14	y	0.25	1	3	1	3	n	0.31	5	11	5	11	y	0.50	4	4	4	4	y	0.23	3	10	3	10	y	0.25	2	6	2	6	y	0.36	4	7	4	7	y	0.22	2	7	2	7	y	ENSMUSG00000109783.2	Gm45338	chr16	lncRNA	predicted gene 45338
novel_NIR_7512	chr16	23353549	23373445	+	23353549	23362373	A3SS&ES	ENSMUST00000211460.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000109783.2	Gm45338	chr16	lncRNA	predicted gene 45338
novel_NIR_7513	chr16	23353549	23373445	+	23353549	23373448	A3SS	ENSMUST00000210371.2	novel	0.33	2	4	2	4	y	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	14	0	14	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.20	1	4	1	4	n	0.09	1	10	1	10	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	ENSMUSG00000109783.2	Gm45338	chr16	lncRNA	predicted gene 45338
novel_NIR_7514	chr16	23353549	23378522	+	23346356	23378522	A5SS	ENSMUST00000209198.2	novel	1.00	3	0	3	0	y	0.83	5	1	5	1	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.86	6	1	6	1	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	ENSMUSG00000109783.2	Gm45338	chr16	lncRNA	predicted gene 45338
novel_NIR_7515	chr16	23353549	23378522	+	23353549	23362373	3pMXE	ENSMUST00000211499.2	novel	1.00	3	0	3	0	y	1.00	5	0	5	0	y	0.33	1	2	1	2	n	-	-	-	-	-	-	0.50	2	2	2	2	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000109783.2	Gm45338	chr16	lncRNA	predicted gene 45338
novel_NIR_7516	chr16	23353549	23378522	+	23353549;23362621	23362373;23378522	ES	ENSMUST00000211460.2	novel	1.00	3	0.0	3	0;0	y	0.83	5	1.0	5	0;2	y	0.50	1	1.0	1	2;0	n	-	-	-	-	-	-	0.67	2	1.0	2	2;0	y	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0.0	6	0;0	y	0.00	0	0.5	0	0;1	n	0.67	1	0.5	1	1;0	n	ENSMUSG00000109783.2	Gm45338	chr16	lncRNA	predicted gene 45338
novel_NIR_7517	chr16	23353549	23378522	+	23353549;23373683	23373448;23378522	ES	ENSMUST00000210371.2	novel	0.19	3	13.0	3	4;22	y	0.24	5	16.0	5	6;26	y	0.10	1	9.5	1	9;10	n	0.00	0	12.5	0	2;23	n	0.08	2	22.5	2	14;31	n	0.15	1	5.5	1	3;8	n	0.00	0	19.0	0	11;27	n	0.00	0	12.5	0	4;21	n	0.00	0	21.0	0	10;32	n	0.24	6	18.5	6	6;31	y	0.00	0	18.5	0	7;30	n	0.06	1	15.5	1	7;24	n	ENSMUSG00000109783.2	Gm45338	chr16	lncRNA	predicted gene 45338
novel_NIR_7518	chr16	23353549	23378522	+	23373683	23378522	A5SS&ES	ENSMUST00000210795.2	novel	0.12	3	22	3	22	n	0.16	5	26	5	26	y	0.09	1	10	1	10	n	0.00	0	23	0	23	n	0.06	2	31	2	31	n	0.11	1	8	1	8	n	0.00	0	27	0	27	n	0.00	0	21	0	21	n	0.00	0	32	0	32	n	0.16	6	31	6	31	y	0.00	0	30	0	30	n	0.04	1	24	1	24	n	ENSMUSG00000109783.2	Gm45338	chr16	lncRNA	predicted gene 45338
novel_NIR_7519	chr16	23353549	23406916	+	23353549	23362373	3pMXE	ENSMUST00000211499.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.67	4	2	4	2	y	-	-	-	-	-	-	0.60	3	2	3	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000109783.2	Gm45338	chr16	lncRNA	predicted gene 45338
novel_NIR_7520	chr16	23353549	23411240	+	23353549	23362373	3pMXE	ENSMUST00000211499.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000109783.2	Gm45338	chr16	lncRNA	predicted gene 45338
novel_NIR_7521	chr16	23353549	23419965	+	23353549	23362373	3pMXE	ENSMUST00000211499.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	ENSMUSG00000109783.2	Gm45338	chr16	lncRNA	predicted gene 45338
novel_NIR_7522	chr16	23353549;23361994	23361941;23362373	+	23353549	23362373	cassetteExon	ENSMUST00000211460.2	novel	1.00	2.0	0	4;0	0	n	-	-	-	-	-	-	0.50	2.0	2	2;2	2	y	1.00	1.0	0	2;0	0	n	0.33	1.0	2	2;0	2	n	1.00	0.5	0	1;0	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1.5	0	0;3	0	n	1.00	1.5	0	1;2	0	n	1.00	2.0	0	3;1	0	n	0.60	1.5	1	2;1	1	n	ENSMUSG00000109783.2	Gm45338	chr16	lncRNA	predicted gene 45338
novel_NIR_7523	chr16	23362621	23373448	+	23346356	23373448	A5SS	ENSMUST00000210795.2	novel	-	-	-	-	-	-	0.00	0	6	0	6	n	0.33	1	2	1	2	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.20	1	4	1	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.67	4	2	4	2	y	0.00	0	8	0	8	n	0.00	0	4	0	4	n	ENSMUSG00000109783.2	Gm45338	chr16	lncRNA	predicted gene 45338
novel_NIR_7524	chr16	23362621	23373448	+	23353549	23373448	A5SS	ENSMUST00000210371.2	novel	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.10	1	9	1	9	n	0.00	0	2	0	2	n	0.00	0	14	0	14	n	0.00	0	3	0	3	n	0.08	1	11	1	11	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.40	4	6	4	6	y	0.00	0	7	0	7	n	0.00	0	7	0	7	n	ENSMUSG00000109783.2	Gm45338	chr16	lncRNA	predicted gene 45338
novel_NIR_7525	chr16	23362621	23373448	+	23362621	23378522	A3SS	ENSMUST00000211460.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000109783.2	Gm45338	chr16	lncRNA	predicted gene 45338
novel_NIR_7526	chr16	23376216	23378522	+	23346356	23378522	A5SS	ENSMUST00000209198.2	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000109783.2	Gm45338	chr16	lncRNA	predicted gene 45338
novel_NIR_7527	chr16	23376216	23378522	+	23362621	23378522	A5SS	ENSMUST00000211460.2	novel	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000109783.2	Gm45338	chr16	lncRNA	predicted gene 45338
novel_NIR_7528	chr16	23383016	23428679	+	23346356	23428679	A5SS	ENSMUST00000209422.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000033355.7	Rtp4	chr16	protein_coding	receptor transporter protein 4
novel_NIR_7529	chr16	23383016	23428679	+	23427887	23428679	5pMXE	ENSMUST00000210901.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033355.7	Rtp4	chr16	protein_coding	receptor transporter protein 4
novel_NIR_7530	chr16	23420571	23421096	+	23420571	23421185	A3SS	ENSMUST00000211569.2	novel	0.00	0	8	0	8	n	0.20	2	8	2	8	y	0.50	1	1	1	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.12	1	7	1	7	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.20	2	8	2	8	y	0.14	1	6	1	6	n	0.00	0	5	0	5	n	ENSMUSG00000033355.7	Rtp4	chr16	protein_coding	receptor transporter protein 4
novel_NIR_7531	chr16	23797339	23802031	-	23797339	23807325	A5SS	ENSMUST00000023151.6	novel	0.03	1	36	1	36	n	0.06	1	16	1	16	n	0.08	2	23	2	23	n	0.01	1	74	1	74	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.03	1	34	1	34	n	0.00	0	17	0	17	n	0.00	0	31	0	31	n	0.00	0	79	0	79	n	0.00	0	60	0	60	n	0.60	3	2	3	2	y	ENSMUSG00000022508.6	Bcl6	chr16	protein_coding	B cell leukemia/lymphoma 6
novel_NIR_7532	chr16	23907521	23908519	-	23907521	23908618	A5SS	ENSMUST00000229403.2	novel	0.32	6	13	6	13	y	0.38	3	5	3	5	y	-	-	-	-	-	-	0.00	0	17	0	17	n	0.33	11	22	11	22	y	0.25	1	3	1	3	n	0.29	4	10	4	10	y	0.12	1	7	1	7	n	0.17	4	20	4	20	y	0.24	6	19	6	19	y	0.09	1	10	1	10	n	0.12	1	7	1	7	n	ENSMUSG00000115919.2	Gm31583	chr16	lncRNA	predicted gene, 31583
novel_NIR_7533	chr16	24011841	24018383	-	24011841	24023489	A5SS	ENSMUST00000229881.2	novel	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000115869.2	Gm31814	chr16	lncRNA	predicted gene, 31814
novel_NIR_7534	chr16	24015039	24023489	-	24005035	24023489	A3SS	ENSMUST00000229480.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000115869.2	Gm31814	chr16	lncRNA	predicted gene, 31814
novel_NIR_7535	chr16	24015039	24023489	-	24011841	24023489	A3SS	ENSMUST00000229881.2	novel	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.33	3	6	3	6	y	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000115869.2	Gm31814	chr16	lncRNA	predicted gene, 31814
novel_NIR_7536	chr16	24032418	24074164	-	24032418	24035105	5pMXE	ENSMUST00000228980.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000115869.2	Gm31814	chr16	lncRNA	predicted gene, 31814
novel_NIR_7537	chr16	24089975;24100632	24100478;24104975	-	24089975	24104975	cassetteExon	ENSMUST00000231672.2	novel	0.00	0.0	24	0;0	24	n	0.05	1.0	18	0;2	18	n	1.00	0.5	0	0;1	0	n	0.36	4.0	7	0;8	7	n	0.09	1.5	15	0;3	15	n	0.00	0.0	1	0;0	1	n	0.04	1.0	24	1;1	24	n	-	-	-	-	-	-	0.18	3.5	16	3;4	16	y	0.03	0.5	18	1;0	18	n	0.05	1.0	19	2;0	19	n	0.08	2.5	27	0;5	27	n	ENSMUSG00000115852.3	Gm52969	chr16	transcribed_processed_pseudogene	predicted gene, 52969
novel_NIR_7538	chr16	24094384	24104975	-	23967448	24104975	A3SS	ENSMUST00000230383.2	novel	1.00	2	0	2	0	y	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	6	0	6	0	y	1.00	5	0	5	0	y	1.00	4	0	4	0	y	ENSMUSG00000115852.3	Gm52969	chr16	transcribed_processed_pseudogene	predicted gene, 52969
novel_NIR_7539	chr16	24094384	24104975	-	24089975	24104975	A3SS	ENSMUST00000231672.2	novel	0.08	2	24	2	24	n	0.28	7	18	7	18	y	-	-	-	-	-	-	0.00	0	7	0	7	n	0.29	6	15	6	15	y	0.00	0	1	0	1	n	0.17	5	24	5	24	y	1.00	4	0	4	0	y	0.11	2	16	2	16	n	0.25	6	18	6	18	y	0.21	5	19	5	19	y	0.13	4	27	4	27	n	ENSMUSG00000115852.3	Gm52969	chr16	transcribed_processed_pseudogene	predicted gene, 52969
novel_NIR_7540	chr16	24100632	24104975	-	23967448	24104975	A3SS	ENSMUST00000230383.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	8	0	8	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	ENSMUSG00000115852.3	Gm52969	chr16	transcribed_processed_pseudogene	predicted gene, 52969
novel_NIR_7541	chr16	24100632	24104975	-	24089975	24104975	A3SS	ENSMUST00000231672.2	novel	0.00	0	24	0	24	n	0.10	2	18	2	18	n	1.00	1	0	1	0	n	0.53	8	7	8	7	y	0.17	3	15	3	15	y	0.00	0	1	0	1	n	0.04	1	24	1	24	n	-	-	-	-	-	-	0.20	4	16	4	16	n	0.00	0	18	0	18	n	0.00	0	19	0	19	n	0.16	5	27	5	27	y	ENSMUSG00000115852.3	Gm52969	chr16	transcribed_processed_pseudogene	predicted gene, 52969
novel_NIR_7542	chr16	24104898	24104975	-	23967448	24104975	A3SS	ENSMUST00000230383.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000115852.3	Gm52969	chr16	transcribed_processed_pseudogene	predicted gene, 52969
novel_NIR_7543	chr16	24104898	24104975	-	24089975	24104975	A3SS	ENSMUST00000231672.2	novel	0.00	0	24	0	24	n	0.00	0	18	0	18	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.25	5	15	5	15	y	0.00	0	1	0	1	n	0.08	2	24	2	24	n	-	-	-	-	-	-	0.00	0	16	0	16	n	0.00	0	18	0	18	n	0.00	0	19	0	19	n	0.00	0	27	0	27	n	ENSMUSG00000115852.3	Gm52969	chr16	transcribed_processed_pseudogene	predicted gene, 52969
novel_NIR_7544	chr16	24105130	24105997	-	24105130	24108481	A5SS	ENSMUST00000230383.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000115852.3	Gm52969	chr16	transcribed_processed_pseudogene	predicted gene, 52969
novel_NIR_7545	chr16	24105130	24105997	-	24105130	24155438	A5SS	ENSMUST00000231672.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000115852.3	Gm52969	chr16	transcribed_processed_pseudogene	predicted gene, 52969
novel_NIR_7546	chr16	24105130	24107692	-	24105130	24108481	A5SS	ENSMUST00000230383.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	8	0	8	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	ENSMUSG00000115852.3	Gm52969	chr16	transcribed_processed_pseudogene	predicted gene, 52969
novel_NIR_7547	chr16	24105130	24107692	-	24105130	24155438	A5SS	ENSMUST00000231672.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	8	0	8	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	ENSMUSG00000115852.3	Gm52969	chr16	transcribed_processed_pseudogene	predicted gene, 52969
novel_NIR_7548	chr16	24105130	24114620	-	24105130	24108481	5pMXE	ENSMUST00000230383.2	novel	1.00	64	0	64	0	y	1.00	44	0	44	0	y	1.00	19	0	19	0	y	1.00	61	0	61	0	y	0.97	64	2	64	2	y	1.00	7	0	7	0	y	1.00	68	0	68	0	y	1.00	17	0	17	0	y	1.00	76	0	76	0	y	1.00	89	0	89	0	y	1.00	55	0	55	0	y	1.00	80	0	80	0	y	ENSMUSG00000115852.3	Gm52969	chr16	transcribed_processed_pseudogene	predicted gene, 52969
novel_NIR_7549	chr16	24105130	24114620	-	24105130	24155438	A5SS	ENSMUST00000231672.2	novel	1.00	64	0	64	0	y	1.00	44	0	44	0	y	1.00	19	0	19	0	y	1.00	61	0	61	0	y	1.00	64	0	64	0	y	1.00	7	0	7	0	y	1.00	68	0	68	0	y	1.00	17	0	17	0	y	1.00	76	0	76	0	y	1.00	89	0	89	0	y	1.00	55	0	55	0	y	1.00	80	0	80	0	y	ENSMUSG00000115852.3	Gm52969	chr16	transcribed_processed_pseudogene	predicted gene, 52969
novel_NIR_7550	chr16	24105130	24114873	-	24105130	24108481	5pMXE	ENSMUST00000230383.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.60	3	2	3	2	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000115852.3	Gm52969	chr16	transcribed_processed_pseudogene	predicted gene, 52969
novel_NIR_7551	chr16	24105130	24114873	-	24105130	24155438	A5SS	ENSMUST00000231672.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000115852.3	Gm52969	chr16	transcribed_processed_pseudogene	predicted gene, 52969
novel_NIR_7552	chr16	24212533	24213476	+	24212533	24261531	A3SS	ENSMUST00000231279.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	n	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000033306.16	Lpp	chr16	protein_coding	LIM domain containing preferred translocation partner in lipoma
novel_NIR_7553	chr16	26533803	26534758	-	26533803	26548955	A5SS	ENSMUST00000174385.8	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000092545.8	Gm20319	chr16	lncRNA	predicted gene, 20319
novel_NIR_7554	chr16	29825092	29835375	+	29827548	29835375	5pMXE	ENSMUST00000181485.3	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000097184.3	4632428C04Rik	chr16	lncRNA	RIKEN cDNA 4632428C04 gene
novel_NIR_7555	chr16	29827953	29835375	+	29827548	29835375	A5SS	ENSMUST00000181485.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	ENSMUSG00000097184.3	4632428C04Rik	chr16	lncRNA	RIKEN cDNA 4632428C04 gene
novel_NIR_7556	chr16	30174678	30176023	-	30174705	30176023	A3SS	ENSMUST00000061350.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.70	7	3	7	3	y	1.00	1	0	1	0	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	ENSMUSG00000022533.15	Atp13a3	chr16	protein_coding	ATPase type 13A3
novel_NIR_7557	chr16	30393424	30396746	-	30393424	30396617	A5SS	ENSMUST00000144666.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000022538.21	Lsg1	chr16	protein_coding	large 60S subunit nuclear export GTPase 1
novel_NIR_7558	chr16	30393424	30396746	-	30393424	30396717	A5SS	ENSMUST00000143170.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022538.21	Lsg1	chr16	protein_coding	large 60S subunit nuclear export GTPase 1
novel_NIR_7559	chr16	30393424	30396746	-	30393424	30400874	A5SS	ENSMUST00000123286.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000022538.21	Lsg1	chr16	protein_coding	large 60S subunit nuclear export GTPase 1
novel_NIR_7560	chr16	30399867	30400874	-	30393424	30400874	A3SS	ENSMUST00000123286.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000022538.21	Lsg1	chr16	protein_coding	large 60S subunit nuclear export GTPase 1
novel_NIR_7561	chr16	30733629	30747179	-	30733595	30747179	A3SS	ENSMUST00000232539.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000116581.2	Gm46565	chr16	lncRNA	predicted gene, 46565
novel_NIR_7562	chr16	30733629	30747179	-	30734392	30747179	A3SS	ENSMUST00000232280.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000116581.2	Gm46565	chr16	lncRNA	predicted gene, 46565
novel_NIR_7563	chr16	30791577	30792225	-	30788757	30792225	A3SS	ENSMUST00000123905.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000087605.2	Gm15742	chr16	lncRNA	predicted gene 15742
novel_NIR_7564	chr16	30979206	30980497	-	30979206	31019757	A5SS	ENSMUST00000230698.2	novel	0.18	2	9	2	9	y	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	18	0	18	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	20	0	20	n	ENSMUSG00000049076.13	Acap2	chr16	protein_coding	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2
novel_NIR_7565	chr16	30979206	31016467	-	30979206	31019757	A5SS	ENSMUST00000230698.2	novel	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	18	0	18	n	0.00	0	4	0	4	n	0.25	2	6	2	6	y	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	20	0	20	n	ENSMUSG00000049076.13	Acap2	chr16	protein_coding	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2
novel_NIR_7566	chr16	31256935	31265433	+	31256935	31264164	A3SS&ES	ENSMUST00000232433.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	3	0	3	0	y	0.33	1	2	1	2	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000046598.16	Bdh1	chr16	protein_coding	3-hydroxybutyrate dehydrogenase, type 1
novel_NIR_7567	chr16	31661657	31672661	+	31661657;31666487	31666454;31672661	ES	ENSMUST00000115205.9	novel	0.00	0	18.5	0	16;21	n	0.00	0	8.0	0	6;10	n	0.00	0	13.0	0	11;15	n	0.00	0	18.0	0	16;20	n	0.00	0	19.0	0	17;21	n	0.22	2	7.0	2	7;7	y	0.00	0	16.0	0	11;21	n	0.00	0	14.0	0	10;18	n	0.00	0	20.0	0	17;23	n	0.00	0	18.5	0	15;22	n	0.00	0	14.0	0	12;16	n	0.00	0	17.5	0	14;21	n	ENSMUSG00000022770.18	Dlg1	chr16	protein_coding	discs large MAGUK scaffold protein 1
novel_NIR_7568	chr16	31661657	31672661	+	31666487	31672661	5pMXE	ENSMUST00000155847.8	novel	0.00	0	21	0	21	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	20	0	20	n	0.00	0	21	0	21	n	0.22	2	7	2	7	y	0.00	0	21	0	21	n	0.00	0	18	0	18	n	0.00	0	23	0	23	n	0.00	0	22	0	22	n	0.00	0	16	0	16	n	0.00	0	21	0	21	n	ENSMUSG00000022770.18	Dlg1	chr16	protein_coding	discs large MAGUK scaffold protein 1
novel_NIR_7569	chr16	31802691	31821814	-	31802691;31809283	31807758;31821814	ES	ENSMUST00000023457.13	novel	0.00	0	11.0	0	21;1	n	0.00	0	8.0	0	16;0	n	0.00	0	21.5	0	43;0	n	0.00	0	14.0	0	27;1	n	0.00	0	18.5	0	35;2	n	0.00	0	7.5	0	13;2	n	0.00	0	10.5	0	21;0	n	0.18	3	13.5	3	27;0	y	0.00	0	12.5	0	25;0	n	0.00	0	14.5	0	27;2	n	0.00	0	9.5	0	17;2	n	0.00	0	9.5	0	18;1	n	ENSMUSG00000022772.13	Senp5	chr16	protein_coding	SUMO/sentrin specific peptidase 5
novel_NIR_7570	chr16	31869256	31870994	-	31863399	31870994	A3SS	ENSMUST00000023467.9	novel	0.16	5	27	5	27	y	0.21	5	19	5	19	y	0.02	1	61	1	61	n	0.02	1	43	1	43	n	0.10	4	37	4	37	n	0.06	2	31	2	31	n	0.18	5	23	5	23	y	0.06	2	31	2	31	n	0.00	0	26	0	26	n	0.03	1	34	1	34	n	0.00	0	21	0	21	n	0.05	2	42	2	42	n	ENSMUSG00000022781.9	Pak2	chr16	protein_coding	p21 (RAC1) activated kinase 2
novel_NIR_7571	chr16	31871201	31871433	-	31871201	31897906	A5SS	ENSMUST00000023467.9	novel	0.00	0	14	0	14	n	0.33	4	8	4	8	y	0.06	2	33	2	33	n	0.00	0	20	0	20	n	0.00	0	33	0	33	n	0.00	0	9	0	9	n	0.05	1	19	1	19	n	0.00	0	18	0	18	n	0.00	0	16	0	16	n	0.00	0	28	0	28	n	0.00	0	9	0	9	n	0.14	2	12	2	12	n	ENSMUSG00000022781.9	Pak2	chr16	protein_coding	p21 (RAC1) activated kinase 2
novel_NIR_7572	chr16	31871201	31897564	-	31871201	31897906	A5SS	ENSMUST00000023467.9	novel	0.18	3	14	3	14	y	0.00	0	8	0	8	n	0.00	0	33	0	33	n	0.00	0	20	0	20	n	0.00	0	33	0	33	n	0.00	0	9	0	9	n	0.00	0	19	0	19	n	0.00	0	18	0	18	n	0.00	0	16	0	16	n	0.07	2	28	2	28	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	ENSMUSG00000022781.9	Pak2	chr16	protein_coding	p21 (RAC1) activated kinase 2
novel_NIR_7573	chr16	31906321	31911162	-	31904155	31911162	A3SS	ENSMUST00000143011.8	novel	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.44	4	5	4	5	y	0.00	0	5	0	5	n	-	-	-	-	-	-	ENSMUSG00000023791.19	Pigx	chr16	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class X
novel_NIR_7574	chr16	31908937	31911162	-	31904155	31911162	A3SS	ENSMUST00000143011.8	novel	0.12	1	7	1	7	n	0.00	0	5	0	5	n	0.64	7	4	7	4	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.50	1	1	1	1	n	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	-	-	-	-	-	-	ENSMUSG00000023791.19	Pigx	chr16	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class X
novel_NIR_7575	chr16	31911303	31918288	-	31911303	31914371	A5SS&ES	ENSMUST00000147003.8	novel	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.38	5	8	5	8	y	0.25	1	3	1	3	n	0.18	3	14	3	14	y	0.00	0	7	0	7	n	0.11	1	8	1	8	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.21	3	11	3	11	y	0.00	0	9	0	9	n	0.40	6	9	6	9	y	ENSMUSG00000023791.19	Pigx	chr16	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class X
novel_NIR_7576	chr16	31911303	31918288	-	31911303	31918294	A5SS	ENSMUST00000143011.8	novel	-	-	-	-	-	-	0.50	1	1	1	1	n	0.71	5	2	5	2	y	0.20	1	4	1	4	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.86	6	1	6	1	y	ENSMUSG00000023791.19	Pigx	chr16	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class X
novel_NIR_7577	chr16	31911303	31918288	-	31911303;31915881	31915818;31918288	ES	ENSMUST00000096109.11	novel	0.00	0	32.5	0	40;25	n	0.04	1	26.0	1	32;20	n	0.12	5	37.5	5	43;32	n	0.03	1	29.0	1	36;22	n	0.06	3	49.0	3	60;38	n	0.00	0	15.0	0	17;13	n	0.02	1	44.5	1	49;40	n	0.00	0	27.0	0	29;25	n	0.00	0	27.5	0	25;30	n	0.06	3	44.0	3	43;45	n	0.00	0	26.5	0	34;19	n	0.15	6	35.0	6	37;33	y	ENSMUSG00000023791.19	Pigx	chr16	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class X
novel_NIR_7578	chr16	32463926	32475808	+	32463926	32482557	A3SS	ENSMUST00000124585.2	novel	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	18	0	18	n	0.18	3	14	3	14	y	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	23	0	23	n	0.00	0	7	0	7	n	0.00	0	25	0	25	n	ENSMUSG00000022791.20	Tnk2	chr16	protein_coding	tyrosine kinase, non-receptor, 2
novel_NIR_7579	chr16	32463926	32475808	+	32463926	32487039	A3SS	ENSMUST00000164358.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022791.20	Tnk2	chr16	protein_coding	tyrosine kinase, non-receptor, 2
novel_NIR_7580	chr16	32498695	32498810	+	32498695	32499096	A3SS	ENSMUST00000238815.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000022791.20	Tnk2	chr16	protein_coding	tyrosine kinase, non-receptor, 2
novel_NIR_7581	chr16	32691733	32697633	-	32677415	32697633	A3SS	ENSMUST00000119810.2	novel	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.50	1	1	1	1	n	0.20	1	4	1	4	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.33	3	6	3	6	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	ENSMUSG00000035629.20	Rubcn	chr16	protein_coding	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein
novel_NIR_7582	chr16	32715567	32717463	+	32711783	32717463	A5SS	ENSMUST00000145146.8	novel	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000022800.15	Fyttd1	chr16	protein_coding	forty-two-three domain containing 1
novel_NIR_7583	chr16	32715567	32717463	+	32715567	32718771	A3SS	ENSMUST00000171325.9	novel	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000022800.15	Fyttd1	chr16	protein_coding	forty-two-three domain containing 1
novel_NIR_7584	chr16	32808851	32814132	+	32808851;32810688	32810635;32814132	ES	ENSMUST00000023491.13	novel	0.27	2	5.5	2	7;4	y	0.00	0	5.0	0	3;7	n	0.00	0	9.5	0	10;9	n	0.00	0	2.5	0	2;3	n	0.00	0	6.5	0	8;5	n	0.00	0	4.5	0	6;3	n	0.00	0	9.5	0	6;13	n	0.00	0	5.5	0	3;8	n	0.00	0	2.5	0	2;3	n	0.00	0	2.5	0	2;3	n	0.00	0	1.5	0	1;2	n	0.22	2	7.0	2	7;7	y	ENSMUSG00000022801.14	Lrch3	chr16	protein_coding	leucine-rich repeats and calponin homology (CH) domain containing 3
novel_NIR_7585	chr16	32990388	33016444	+	33006370	33016444	5pMXE	ENSMUST00000232100.2	novel	0.36	5	9	5	9	y	0.00	0	5	0	5	n	0.78	36	10	36	10	y	0.00	0	6	0	6	n	0.06	1	16	1	16	n	0.82	9	2	9	2	y	0.35	9	17	9	17	y	0.81	13	3	13	3	y	0.40	2	3	2	3	y	0.21	4	15	4	15	y	0.00	0	9	0	9	n	0.08	1	12	1	12	n	ENSMUSG00000022807.10	Osbpl11	chr16	protein_coding	oxysterol binding protein-like 11
novel_NIR_7586	chr16	32999669	33016444	+	33006370	33016444	5pMXE	ENSMUST00000232100.2	novel	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.17	2	10	2	10	y	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.00	0	2	0	2	n	0.00	0	17	0	17	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	ENSMUSG00000022807.10	Osbpl11	chr16	protein_coding	oxysterol binding protein-like 11
novel_NIR_7587	chr16	33026372	33034712	+	33026372;33030472	33030296;33034712	ES	ENSMUST00000232100.2	novel	0.00	0	13.0	0	10;16	n	0.00	0	8.0	0	9;7	n	0.00	0	76.0	0	81;71	n	0.15	3	16.5	3	15;18	y	0.04	1	27.0	1	24;30	n	0.00	0	21.5	0	26;17	n	0.00	0	20.5	0	27;14	n	0.00	0	27.5	0	28;27	n	0.00	0	18.5	0	21;16	n	0.00	0	28.0	0	31;25	n	0.00	0	13.0	0	13;13	n	0.00	0	22.0	0	25;19	n	ENSMUSG00000022807.10	Osbpl11	chr16	protein_coding	oxysterol binding protein-like 11
novel_NIR_7588	chr16	33285680	33287225	+	33255344	33287225	A5SS	ENSMUST00000232023.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022811.18	Zfp148	chr16	protein_coding	zinc finger protein 148
novel_NIR_7589	chr16	33315833	33316127	+	33315833	33316116	A3SS	ENSMUST00000165418.9	novel	0.19	3	13	3	13	y	0.10	1	9	1	9	n	0.04	1	23	1	23	n	0.06	1	17	1	17	n	0.00	0	28	0	28	n	0.06	1	17	1	17	n	0.05	1	21	1	21	n	0.00	0	17	0	17	n	0.29	5	12	5	12	y	0.16	4	21	4	21	y	0.11	1	8	1	8	n	0.00	0	22	0	22	n	ENSMUSG00000022811.18	Zfp148	chr16	protein_coding	zinc finger protein 148
novel_NIR_7590	chr16	33315833	33317401	+	33315833	33316116	A3SS	ENSMUST00000165418.9	novel	0.00	0	13	0	13	n	0.18	2	9	2	9	y	0.04	1	23	1	23	n	0.15	3	17	3	17	y	0.10	3	28	3	28	n	0.11	2	17	2	17	n	0.00	0	21	0	21	n	0.00	0	17	0	17	n	0.00	0	12	0	12	n	0.19	5	21	5	21	y	0.00	0	8	0	8	n	0.00	0	22	0	22	n	ENSMUSG00000022811.18	Zfp148	chr16	protein_coding	zinc finger protein 148
novel_NIR_7591	chr16	33315833	33321933	+	33315833	33316116	A3SS	ENSMUST00000165418.9	novel	0.07	1	13	1	13	n	0.25	3	9	3	9	y	0.00	0	23	0	23	n	0.00	0	17	0	17	n	0.15	5	28	5	28	y	0.00	0	17	0	17	n	0.05	1	21	1	21	n	0.00	0	17	0	17	n	0.00	0	12	0	12	n	0.00	0	21	0	21	n	0.00	0	8	0	8	n	0.00	0	22	0	22	n	ENSMUSG00000022811.18	Zfp148	chr16	protein_coding	zinc finger protein 148
novel_NIR_7592	chr16	33874031	33875202	-	33874034	33875202	A3SS	ENSMUST00000114973.9	novel	0.06	2	33	2	33	n	0.15	8	46	8	46	y	0.00	0	21	0	21	n	0.13	9	60	9	60	n	0.25	19	57	19	57	y	0.30	7	16	7	16	y	0.16	9	47	9	47	y	0.15	6	35	6	35	y	0.09	6	61	6	61	n	0.15	14	77	14	77	y	0.07	3	43	3	43	n	0.19	10	43	10	43	y	ENSMUSG00000061751.17	Kalrn	chr16	protein_coding	kalirin, RhoGEF kinase
novel_NIR_7593	chr16	34627753	34635805	+	34565740	34635805	A5SS	ENSMUST00000155268.2	novel	1.00	10	0	10	0	y	1.00	15	0	15	0	y	0.88	21	3	21	3	y	0.94	32	2	32	2	y	0.94	46	3	46	3	y	0.93	43	3	43	3	y	1.00	28	0	28	0	y	0.85	45	8	45	8	y	1.00	24	0	24	0	y	0.97	33	1	33	1	y	1.00	25	0	25	0	y	0.90	18	2	18	2	y	ENSMUSG00000022836.12	Mylk	chr16	protein_coding	myosin, light polypeptide kinase
novel_NIR_7594	chr16	34627753	34635805	+	34605397	34635805	A5SS	ENSMUST00000023538.9	novel	1.00	10	0	10	0	y	1.00	15	0	15	0	y	1.00	21	0	21	0	y	1.00	32	0	32	0	y	1.00	46	0	46	0	y	1.00	43	0	43	0	y	1.00	28	0	28	0	y	1.00	45	0	45	0	y	1.00	24	0	24	0	y	1.00	33	0	33	0	y	1.00	25	0	25	0	y	1.00	18	0	18	0	y	ENSMUSG00000022836.12	Mylk	chr16	protein_coding	myosin, light polypeptide kinase
novel_NIR_7595	chr16	34635972	34656688	+	34635972	34680934	A3SS	ENSMUST00000155268.2	novel	0.00	0	16	0	16	n	0.07	1	13	1	13	n	0.15	6	33	6	33	y	0.00	0	35	0	35	n	0.02	1	49	1	49	n	0.06	2	32	2	32	n	0.20	4	16	4	16	y	0.04	2	55	2	55	n	0.08	1	12	1	12	n	0.04	2	43	2	43	n	0.00	0	15	0	15	n	0.20	3	12	3	12	y	ENSMUSG00000022836.12	Mylk	chr16	protein_coding	myosin, light polypeptide kinase
novel_NIR_7596	chr16	34635972	34660914	+	34635972	34680934	A3SS	ENSMUST00000155268.2	novel	0.30	7	16	7	16	y	0.38	8	13	8	13	y	0.15	6	33	6	33	y	0.03	1	35	1	35	n	0.12	7	49	7	49	n	0.11	4	32	4	32	n	0.36	9	16	9	16	y	0.08	5	55	5	55	n	0.25	4	12	4	12	y	0.07	3	43	3	43	n	0.21	4	15	4	15	y	0.25	4	12	4	12	y	ENSMUSG00000022836.12	Mylk	chr16	protein_coding	myosin, light polypeptide kinase
novel_NIR_7597	chr16	34699938	34700467	+	34699938	34700461	A3SS	ENSMUST00000023538.9	novel	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	21	0	21	n	0.00	0	17	0	17	n	0.04	1	27	1	27	n	0.00	0	16	0	16	n	0.15	3	17	3	17	y	0.00	0	28	0	28	n	0.00	0	15	0	15	n	0.00	0	36	0	36	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	ENSMUSG00000022836.12	Mylk	chr16	protein_coding	myosin, light polypeptide kinase
novel_NIR_7598	chr16	34719883	34722706	+	34719883	34732517	A3SS	ENSMUST00000023538.9	novel	0.00	0	27	0	27	n	0.19	5	21	5	21	y	0.05	2	35	2	35	n	0.03	1	38	1	38	n	0.11	10	77	10	77	n	0.00	0	31	0	31	n	0.02	1	41	1	41	n	0.04	2	49	2	49	n	0.07	1	14	1	14	n	0.12	4	28	4	28	n	0.05	1	21	1	21	n	0.00	0	23	0	23	n	ENSMUSG00000022836.12	Mylk	chr16	protein_coding	myosin, light polypeptide kinase
novel_NIR_7599	chr16	34719883	34734334	+	34719883;34732654	34732517;34734334	ES	ENSMUST00000023538.9	novel	0.21	6	23.0	6	27;19	y	0.00	0	22.0	0	21;23	n	0.10	4	37.0	4	35;39	n	0.03	1	32.0	1	38;26	n	0.00	0	60.0	0	77;43	n	0.00	0	31.5	0	31;32	n	0.00	0	42.0	0	41;43	n	0.00	0	42.5	0	49;36	n	0.00	0	17.5	0	14;21	n	0.08	3	35.5	3	28;43	n	0.00	0	21.5	0	21;22	n	0.04	1	24.5	1	23;26	n	ENSMUSG00000022836.12	Mylk	chr16	protein_coding	myosin, light polypeptide kinase
novel_NIR_7600	chr16	35231367	35250103	-	35231367	35233375	5pMXE	ENSMUST00000231779.2	novel	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	10	0	10	0	y	1.00	15	0	15	0	y	1.00	11	0	11	0	y	1.00	1	0	1	0	n	1.00	10	0	10	0	y	1.00	5	0	5	0	y	1.00	7	0	7	0	y	1.00	15	0	15	0	y	1.00	8	0	8	0	y	1.00	8	0	8	0	y	ENSMUSG00000022844.9	Pdia5	chr16	protein_coding	protein disulfide isomerase associated 5
novel_NIR_7601	chr16	35287027	35300513	-	35287027;35292970	35292935;35300513	ES	ENSMUST00000231595.2	novel	0.00	0	0.5	0	0;1	n	-	-	-	-	-	-	0.00	0	1.5	0	3;0	n	0.00	0	1.5	0	1;2	n	0.00	0	0.5	0	0;1	n	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	0.00	0	0.5	0	0;1	n	0.00	0	1.5	0	2;1	n	1.00	3	0.0	3	0;0	y	-	-	-	-	-	-	0.00	0	1.5	0	1;2	n	ENSMUSG00000022844.9	Pdia5	chr16	protein_coding	protein disulfide isomerase associated 5
novel_NIR_7602	chr16	35292970	35310069	-	35292970;35300587	35300513;35310069	ES	ENSMUST00000231595.2	novel	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	0.00	0	1.0	0	2;0	n	0.00	0	1.0	0	1;1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1.0	0	2;0	n	ENSMUSG00000022844.9	Pdia5	chr16	protein_coding	protein disulfide isomerase associated 5
novel_NIR_7603	chr16	35310188	35311099	-	35310188	35310864	5pMXE	ENSMUST00000231595.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000022844.9	Pdia5	chr16	protein_coding	protein disulfide isomerase associated 5
novel_NIR_7604	chr16	35622088	35634285	+	35622088	35634288	A3SS	ENSMUST00000231579.2	novel	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.33	2	4	2	4	y	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000022849.6	Hspbap1	chr16	protein_coding	Hspb associated protein 1
novel_NIR_7605	chr16	35628312	35634288	+	35622088	35634288	A5SS	ENSMUST00000231579.2	novel	0.50	1	1	1	1	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.60	3	2	3	2	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000022849.6	Hspbap1	chr16	protein_coding	Hspb associated protein 1
novel_NIR_7606	chr16	35759541	35761403	+	35759576	35761403	A5SS	ENSMUST00000128878.8	novel	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.05	1	18	1	18	n	0.12	2	14	2	14	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.21	3	11	3	11	y	ENSMUSG00000022906.16	Parp9	chr16	protein_coding	poly (ADP-ribose) polymerase family, member 9
novel_NIR_7607	chr16	35866857	35867423	-	35866857	35872656	A5SS	ENSMUST00000231379.2	novel	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000003955.9	Fam162a	chr16	protein_coding	family with sequence similarity 162, member A
novel_NIR_7608	chr16	35867570	35870212	-	35864461	35870212	A3SS	ENSMUST00000232390.2	novel	0.17	1	5	1	5	n	0.00	0	18	0	18	n	0.17	4	20	4	20	y	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.11	2	17	2	17	n	0.17	1	5	1	5	n	0.00	0	6	0	6	n	0.20	4	16	4	16	y	0.20	3	12	3	12	y	0.00	0	9	0	9	n	ENSMUSG00000003955.9	Fam162a	chr16	protein_coding	family with sequence similarity 162, member A
novel_NIR_7609	chr16	35872778	35892268	-	35872778	35891687	5pMXE	ENSMUST00000231351.2	novel	1.00	1	0	1	0	n	0.50	2	2	2	2	y	0.50	1	1	1	1	n	0.50	2	2	2	2	y	0.80	4	1	4	1	y	0.00	0	3	0	3	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	0.83	5	1	5	1	y	1.00	5	0	5	0	y	0.89	8	1	8	1	y	ENSMUSG00000003955.9	Fam162a	chr16	protein_coding	family with sequence similarity 162, member A
novel_NIR_7610	chr16	35872778	35892375	-	35872778	35891687	5pMXE	ENSMUST00000231351.2	novel	1.00	1	0	1	0	n	0.67	4	2	4	2	y	0.50	1	1	1	1	n	0.75	6	2	6	2	y	0.75	3	1	3	1	y	0.00	0	3	0	3	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	0.89	8	1	8	1	y	1.00	10	0	10	0	y	0.86	6	1	6	1	y	ENSMUSG00000003955.9	Fam162a	chr16	protein_coding	family with sequence similarity 162, member A
novel_NIR_7611	chr16	35892507	35901633	+	35892507	35905387	A3SS	ENSMUST00000163352.9	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.33	2	4	2	4	y	0.00	0	7	0	7	n	0.00	0	5	0	5	n	ENSMUSG00000075229.12	Ccdc58	chr16	protein_coding	coiled-coil domain containing 58
novel_NIR_7612	chr16	35892507	35901633	+	35892507	35910271	A3SS	ENSMUST00000231468.2	novel	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.15	2	11	2	11	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.15	2	11	2	11	y	0.00	0	6	0	6	n	0.00	0	4	0	4	n	ENSMUSG00000075229.12	Ccdc58	chr16	protein_coding	coiled-coil domain containing 58
novel_NIR_7613	chr16	35892507	35903131	+	35892507	35905387	A3SS	ENSMUST00000163352.9	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.38	3	5	3	5	y	ENSMUSG00000075229.12	Ccdc58	chr16	protein_coding	coiled-coil domain containing 58
novel_NIR_7614	chr16	35892507	35903131	+	35892507	35910271	A3SS	ENSMUST00000231468.2	novel	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.43	3	4	3	4	y	ENSMUSG00000075229.12	Ccdc58	chr16	protein_coding	coiled-coil domain containing 58
novel_NIR_7615	chr16	35892757	35903061	+	35901773	35903061	5pMXE	ENSMUST00000099937.6	novel	0.50	1	1	1	1	n	0.00	0	1	0	1	n	1.00	3	0	3	0	y	0.60	3	2	3	2	y	0.50	3	3	3	3	y	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.33	1	2	1	2	n	1.00	6	0	6	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000075229.12	Ccdc58	chr16	protein_coding	coiled-coil domain containing 58
novel_NIR_7616	chr16	35903186	35910271	+	35892507	35910271	A5SS	ENSMUST00000231468.2	novel	0.12	1	7	1	7	n	0.12	1	7	1	7	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.29	2	5	2	5	y	0.00	0	6	0	6	n	0.09	1	10	1	10	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	ENSMUSG00000075229.12	Ccdc58	chr16	protein_coding	coiled-coil domain containing 58
novel_NIR_7617	chr16	35903186	35910271	+	35909633	35910271	5pMXE	ENSMUST00000231773.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000075229.12	Ccdc58	chr16	protein_coding	coiled-coil domain containing 58
novel_NIR_7618	chr16	35903186	35910271	+	35909812	35910271	5pMXE	ENSMUST00000231239.2	novel	1.00	1	0	1	0	n	0.12	1	7	1	7	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.20	2	8	2	8	y	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	ENSMUSG00000075229.12	Ccdc58	chr16	protein_coding	coiled-coil domain containing 58
novel_NIR_7619	chr16	35907701	35910271	+	35892507	35910271	A5SS	ENSMUST00000231468.2	novel	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.40	2	3	2	3	y	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.25	2	6	2	6	y	0.00	0	10	0	10	n	0.08	1	11	1	11	n	0.33	3	6	3	6	y	0.56	5	4	5	4	y	ENSMUSG00000075229.12	Ccdc58	chr16	protein_coding	coiled-coil domain containing 58
novel_NIR_7620	chr16	35907701	35910271	+	35909633	35910271	5pMXE	ENSMUST00000231773.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	5	0	5	0	y	ENSMUSG00000075229.12	Ccdc58	chr16	protein_coding	coiled-coil domain containing 58
novel_NIR_7621	chr16	35907701	35910271	+	35909812	35910271	5pMXE	ENSMUST00000231239.2	novel	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.40	2	3	2	3	y	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.43	3	4	3	4	y	0.62	5	3	5	3	y	ENSMUSG00000075229.12	Ccdc58	chr16	protein_coding	coiled-coil domain containing 58
novel_NIR_7622	chr16	35908972	35910271	+	35892507	35910271	A5SS	ENSMUST00000231468.2	novel	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.00	0	11	0	11	n	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.31	5	11	5	11	y	0.00	0	6	0	6	n	0.00	0	4	0	4	n	ENSMUSG00000075229.12	Ccdc58	chr16	protein_coding	coiled-coil domain containing 58
novel_NIR_7623	chr16	35908972	35910271	+	35909633	35910271	5pMXE	ENSMUST00000231773.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000075229.12	Ccdc58	chr16	protein_coding	coiled-coil domain containing 58
novel_NIR_7624	chr16	35908972	35910271	+	35909812	35910271	5pMXE	ENSMUST00000231239.2	novel	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	5	0	5	n	0.14	1	6	1	6	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.62	5	3	5	3	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	ENSMUSG00000075229.12	Ccdc58	chr16	protein_coding	coiled-coil domain containing 58
novel_NIR_7625	chr16	36435718	36449332	-	36441401	36449332	3pMXE	ENSMUST00000135280.2	novel	0.18	2	9	2	9	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000022901.14	Cd86	chr16	protein_coding	CD86 antigen
novel_NIR_7626	chr16	36705550	36706496	+	36705550	36706493	A3SS	ENSMUST00000114812.9	novel	0.43	3	4	3	4	y	0.60	3	2	3	2	y	0.60	9	6	9	6	y	0.82	9	2	9	2	y	0.36	5	9	5	9	y	0.33	1	2	1	2	n	0.56	10	8	10	8	y	0.72	13	5	13	5	y	0.50	6	6	6	6	y	0.50	2	2	2	2	y	0.33	1	2	1	2	n	0.43	6	8	6	8	y	ENSMUSG00000034243.18	Golgb1	chr16	protein_coding	golgi autoantigen, golgin subfamily b, macrogolgin 1
novel_NIR_7627	chr16	36705550	36706496	+	36705550	36707601	A3SS	ENSMUST00000135800.2	novel	0.50	3	3	3	3	y	0.75	3	1	3	1	y	0.69	9	4	9	4	y	0.90	9	1	9	1	y	0.71	5	2	5	2	y	0.20	1	4	1	4	n	0.77	10	3	10	3	y	0.93	13	1	13	1	y	1.00	6	0	6	0	y	0.50	2	2	2	2	n	1.00	1	0	1	0	n	0.55	6	5	6	5	y	ENSMUSG00000034243.18	Golgb1	chr16	protein_coding	golgi autoantigen, golgin subfamily b, macrogolgin 1
novel_NIR_7628	chr16	36711854	36713693	+	36711854	36713678	A3SS	ENSMUST00000039855.9	novel	0.00	0	17	0	17	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.10	1	9	1	9	n	0.00	0	7	0	7	n	0.05	1	18	1	18	n	0.22	2	7	2	7	y	0.09	1	10	1	10	n	0.08	1	11	1	11	n	0.00	0	7	0	7	n	ENSMUSG00000034243.18	Golgb1	chr16	protein_coding	golgi autoantigen, golgin subfamily b, macrogolgin 1
novel_NIR_7629	chr16	36711854	36713693	+	36711854	36715193	A3SS	ENSMUST00000114812.9	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.50	2	2	2	2	y	0.17	1	5	1	5	n	1.00	1	0	1	0	n	0.00	0	7	0	7	n	ENSMUSG00000034243.18	Golgb1	chr16	protein_coding	golgi autoantigen, golgin subfamily b, macrogolgin 1
novel_NIR_7630	chr16	36711854	36713696	+	36711854	36713678	A3SS	ENSMUST00000039855.9	novel	0.06	1	17	1	17	n	0.00	0	8	0	8	n	0.36	4	7	4	7	y	0.23	3	10	3	10	y	0.25	4	12	4	12	y	0.00	0	9	0	9	n	0.12	1	7	1	7	n	0.00	0	18	0	18	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.12	1	7	1	7	n	ENSMUSG00000034243.18	Golgb1	chr16	protein_coding	golgi autoantigen, golgin subfamily b, macrogolgin 1
novel_NIR_7631	chr16	36711854	36713696	+	36711854	36715193	A3SS	ENSMUST00000114812.9	novel	0.33	1	2	1	2	n	-	-	-	-	-	-	0.36	4	7	4	7	y	0.60	3	2	3	2	y	0.50	4	4	4	4	y	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.12	1	7	1	7	n	ENSMUSG00000034243.18	Golgb1	chr16	protein_coding	golgi autoantigen, golgin subfamily b, macrogolgin 1
novel_NIR_7632	chr16	3702670	3703077	+	3702670	3715115	A3SS	ENSMUST00000176625.8	novel	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.10	1	9	1	9	n	0.09	1	10	1	10	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.29	2	5	2	5	y	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	ENSMUSG00000005982.15	Naa60	chr16	protein_coding	N(alpha)-acetyltransferase 60, NatF catalytic subunit
novel_NIR_7633	chr16	3715244	3716040	+	3715244	3719640	A3SS	ENSMUST00000175809.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	ENSMUSG00000005982.15	Naa60	chr16	protein_coding	N(alpha)-acetyltransferase 60, NatF catalytic subunit
novel_NIR_7634	chr16	3717832	3718606	+	3717832	3719640	A3SS	ENSMUST00000176224.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000005982.15	Naa60	chr16	protein_coding	N(alpha)-acetyltransferase 60, NatF catalytic subunit
novel_NIR_7635	chr16	3717832	3718606	+	3717832	3729315	A3SS	ENSMUST00000176233.2	novel	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.33	2	4	2	4	y	0.14	1	6	1	6	n	ENSMUSG00000093575.2	Gm20695	chr16	protein_coding	predicted gene 20695
novel_NIR_7636	chr16	3717832	3719710	+	3717832	3718557	A3SS&ES	ENSMUST00000143537.9	novel	0.11	2	16	2	16	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.11	3	25	3	25	n	0.00	0	24	0	24	n	0.71	5	2	5	2	y	0.22	6	21	6	21	y	0.00	0	7	0	7	n	0.25	5	15	5	15	y	0.19	7	30	7	30	y	0.30	9	21	9	21	y	0.00	0	20	0	20	n	ENSMUSG00000005982.15	Naa60	chr16	protein_coding	N(alpha)-acetyltransferase 60, NatF catalytic subunit
novel_NIR_7637	chr16	3717832	3719710	+	3717832	3719640	A3SS	ENSMUST00000176224.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	2	0	2	n	1.00	5	0	5	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	7	0	7	0	y	1.00	9	0	9	0	y	-	-	-	-	-	-	ENSMUSG00000005982.15	Naa60	chr16	protein_coding	N(alpha)-acetyltransferase 60, NatF catalytic subunit
novel_NIR_7638	chr16	3717832	3719710	+	3717832	3729315	A3SS	ENSMUST00000176233.2	novel	0.29	2	5	2	5	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.25	3	9	3	9	n	0.00	0	4	0	4	n	1.00	5	0	5	0	y	0.67	6	3	6	3	n	0.00	0	1	0	1	n	0.50	5	5	5	5	n	0.54	7	6	7	6	n	0.69	9	4	9	4	n	0.00	0	6	0	6	n	ENSMUSG00000093575.2	Gm20695	chr16	protein_coding	predicted gene 20695
novel_NIR_7639	chr16	3717832	3719895	+	3717832	3718557	A3SS&ES	ENSMUST00000143537.9	novel	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.10	1	9	1	9	n	0.07	2	25	2	25	n	0.00	0	24	0	24	n	0.50	2	2	2	2	y	0.25	7	21	7	21	y	0.00	0	7	0	7	n	0.17	3	15	3	15	y	0.06	2	30	2	30	n	0.09	2	21	2	21	n	0.05	1	20	1	20	n	ENSMUSG00000005982.15	Naa60	chr16	protein_coding	N(alpha)-acetyltransferase 60, NatF catalytic subunit
novel_NIR_7640	chr16	3717832	3719895	+	3717832	3719640	3pMXE	ENSMUST00000176224.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	1.00	2	0	2	0	y	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000005982.15	Naa60	chr16	protein_coding	N(alpha)-acetyltransferase 60, NatF catalytic subunit
novel_NIR_7641	chr16	3717832	3719895	+	3717832	3729315	A3SS	ENSMUST00000176233.2	novel	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.18	2	9	2	9	n	0.00	0	4	0	4	n	1.00	2	0	2	0	y	0.70	7	3	7	3	n	0.00	0	1	0	1	n	0.38	3	5	3	5	n	0.25	2	6	2	6	n	0.33	2	4	2	4	n	0.14	1	6	1	6	n	ENSMUSG00000093575.2	Gm20695	chr16	protein_coding	predicted gene 20695
novel_NIR_7642	chr16	3717832	3719898	+	3717832	3718557	A3SS&ES	ENSMUST00000143537.9	novel	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.11	3	25	3	25	n	0.00	0	24	0	24	n	0.00	0	2	0	2	n	0.00	0	21	0	21	n	0.22	2	7	2	7	y	0.00	0	15	0	15	n	0.06	2	30	2	30	n	0.05	1	21	1	21	n	0.05	1	20	1	20	n	ENSMUSG00000005982.15	Naa60	chr16	protein_coding	N(alpha)-acetyltransferase 60, NatF catalytic subunit
novel_NIR_7643	chr16	3717832	3719898	+	3717832	3719640	3pMXE	ENSMUST00000176224.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000005982.15	Naa60	chr16	protein_coding	N(alpha)-acetyltransferase 60, NatF catalytic subunit
novel_NIR_7644	chr16	3717832;3719989	3719710;3729315	+	3717832	3729315	cassetteExon	ENSMUST00000176233.2	novel	0.33	2.5	5	2;3	5	y	0.14	0.5	3	0;1	3	n	0.00	0.0	1	0;0	1	n	0.22	2.5	9	3;2	9	y	0.20	1.0	4	0;2	4	n	1.00	2.5	0	5;0	0	n	0.65	5.5	3	6;5	3	y	0.60	1.5	1	0;3	1	n	0.38	3.0	5	5;1	5	n	0.45	5.0	6	7;3	6	y	0.62	6.5	4	9;4	4	y	0.14	1.0	6	0;2	6	n	ENSMUSG00000093575.2	Gm20695	chr16	protein_coding	predicted gene 20695
novel_NIR_7645	chr16	3717832;3719989	3719895;3729315	+	3717832	3729315	cassetteExon	ENSMUST00000176233.2	novel	0.23	1.5	5	0;3	5	n	0.14	0.5	3	0;1	3	n	0.33	0.5	1	1;0	1	n	0.18	2.0	9	2;2	9	y	0.20	1.0	4	0;2	4	n	1.00	1.0	0	2;0	0	n	0.67	6.0	3	7;5	3	y	0.60	1.5	1	0;3	1	n	0.29	2.0	5	3;1	5	n	0.29	2.5	6	2;3	6	y	0.43	3.0	4	2;4	4	y	0.20	1.5	6	1;2	6	n	ENSMUSG00000093575.2	Gm20695	chr16	protein_coding	predicted gene 20695
novel_NIR_7646	chr16	3717832;3719989	3719898;3729315	+	3717832	3729315	cassetteExon	ENSMUST00000176233.2	novel	0.23	1.5	5	0;3	5	n	0.14	0.5	3	0;1	3	n	0.00	0.0	1	0;0	1	n	0.22	2.5	9	3;2	9	y	0.20	1.0	4	0;2	4	n	-	-	-	-	-	-	0.45	2.5	3	0;5	3	n	0.71	2.5	1	2;3	1	y	0.09	0.5	5	0;1	5	n	0.29	2.5	6	2;3	6	y	0.38	2.5	4	1;4	4	n	0.20	1.5	6	1;2	6	n	ENSMUSG00000093575.2	Gm20695	chr16	protein_coding	predicted gene 20695
novel_NIR_7647	chr16	3717832;3719999	3719710;3729315	+	3717832	3729315	cassetteExon	ENSMUST00000176233.2	novel	0.17	1.0	5	2;0	5	n	0.00	0.0	3	0;0	3	n	0.00	0.0	1	0;0	1	n	0.25	3.0	9	3;3	9	y	0.20	1.0	4	0;2	4	n	1.00	2.5	0	5;0	0	n	0.54	3.5	3	6;1	3	n	0.00	0.0	1	0;0	1	n	0.33	2.5	5	5;0	5	n	0.45	5.0	6	7;3	6	y	0.53	4.5	4	9;0	4	n	0.00	0.0	6	0;0	6	n	ENSMUSG00000093575.2	Gm20695	chr16	protein_coding	predicted gene 20695
novel_NIR_7648	chr16	3717832;3719999	3719895;3729315	+	3717832	3729315	cassetteExon	ENSMUST00000176233.2	novel	0.00	0.0	5	0;0	5	n	0.00	0.0	3	0;0	3	n	0.33	0.5	1	1;0	1	n	0.22	2.5	9	2;3	9	y	0.20	1.0	4	0;2	4	n	1.00	1.0	0	2;0	0	n	0.57	4.0	3	7;1	3	n	0.00	0.0	1	0;0	1	n	0.23	1.5	5	3;0	5	n	0.29	2.5	6	2;3	6	y	0.20	1.0	4	2;0	4	n	0.08	0.5	6	1;0	6	n	ENSMUSG00000093575.2	Gm20695	chr16	protein_coding	predicted gene 20695
novel_NIR_7649	chr16	3717832;3719999	3719898;3729315	+	3717832	3729315	cassetteExon	ENSMUST00000176233.2	novel	0.00	0.0	5	0;0	5	n	0.00	0.0	3	0;0	3	n	0.00	0.0	1	0;0	1	n	0.25	3.0	9	3;3	9	y	0.20	1.0	4	0;2	4	n	-	-	-	-	-	-	0.14	0.5	3	0;1	3	n	0.50	1.0	1	2;0	1	n	0.00	0.0	5	0;0	5	n	0.29	2.5	6	2;3	6	y	0.11	0.5	4	1;0	4	n	0.08	0.5	6	1;0	6	n	ENSMUSG00000093575.2	Gm20695	chr16	protein_coding	predicted gene 20695
novel_NIR_7650	chr16	3719989	3729315	+	3717832	3729315	A5SS	ENSMUST00000176233.2	novel	0.38	3	5	3	5	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.18	2	9	2	9	n	0.33	2	4	2	4	y	-	-	-	-	-	-	0.62	5	3	5	3	n	0.75	3	1	3	1	n	0.17	1	5	1	5	n	0.33	3	6	3	6	n	0.50	4	4	4	4	n	0.25	2	6	2	6	n	ENSMUSG00000093575.2	Gm20695	chr16	protein_coding	predicted gene 20695
novel_NIR_7651	chr16	3719989	3729315	+	3726728	3729315	5pMXE	ENSMUST00000145150.9	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	ENSMUSG00000014232.15	Cluap1	chr16	protein_coding	clusterin associated protein 1
novel_NIR_7652	chr16	3719989	3729315	+	3727017	3729315	5pMXE	ENSMUST00000040881.14	novel	0.38	3	5	3	5	y	0.20	1	4	1	4	n	0.00	0	8	0	8	n	0.29	2	5	2	5	y	0.40	2	3	2	3	y	0.00	0	10	0	10	n	0.31	5	11	5	11	y	0.60	3	2	3	2	y	0.12	1	7	1	7	n	0.27	3	8	3	8	y	0.40	4	6	4	6	y	0.29	2	5	2	5	y	ENSMUSG00000014232.15	Cluap1	chr16	protein_coding	clusterin associated protein 1
novel_NIR_7653	chr16	3719989	3729315	+	3727165	3729315	5pMXE	ENSMUST00000139294.2	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.75	3	1	3	1	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	ENSMUSG00000014232.15	Cluap1	chr16	protein_coding	clusterin associated protein 1
novel_NIR_7654	chr16	3719999	3729315	+	3717832	3729315	A5SS	ENSMUST00000176233.2	novel	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.25	3	9	3	9	n	0.33	2	4	2	4	y	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.33	3	6	3	6	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	ENSMUSG00000093575.2	Gm20695	chr16	protein_coding	predicted gene 20695
novel_NIR_7655	chr16	3719999	3729315	+	3726728	3729315	5pMXE	ENSMUST00000145150.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000014232.15	Cluap1	chr16	protein_coding	clusterin associated protein 1
novel_NIR_7656	chr16	3719999	3729315	+	3727017	3729315	5pMXE	ENSMUST00000040881.14	novel	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.38	3	5	3	5	y	0.40	2	3	2	3	y	0.00	0	10	0	10	n	0.08	1	11	1	11	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.27	3	8	3	8	y	0.00	0	6	0	6	n	0.00	0	5	0	5	n	ENSMUSG00000014232.15	Cluap1	chr16	protein_coding	clusterin associated protein 1
novel_NIR_7657	chr16	3719999	3729315	+	3727165	3729315	5pMXE	ENSMUST00000139294.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000014232.15	Cluap1	chr16	protein_coding	clusterin associated protein 1
novel_NIR_7658	chr16	37356555	37359336	-	37356555	37360015	A5SS	ENSMUST00000023525.9	novel	0.07	1	14	1	14	n	0.00	0	3	0	3	n	0.00	0	22	0	22	n	0.19	3	13	3	13	y	0.00	0	23	0	23	n	0.00	0	22	0	22	n	0.00	0	23	0	23	n	0.00	0	16	0	16	n	0.00	0	18	0	18	n	0.00	0	22	0	22	n	0.00	0	15	0	15	n	0.00	0	20	0	20	n	ENSMUSG00000022828.11	Gtf2e1	chr16	protein_coding	general transcription factor II E, polypeptide 1 (alpha subunit)
novel_NIR_7659	chr16	37444745	37446029	+	37444745	37452038	A3SS	ENSMUST00000159938.2	novel	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.14	1	6	1	6	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.44	4	5	4	5	y	0.00	0	3	0	3	n	0.06	1	15	1	15	n	ENSMUSG00000022821.14	Hgd	chr16	protein_coding	homogentisate 1, 2-dioxygenase
novel_NIR_7660	chr16	37444745	37446289	+	37444745	37452038	A3SS	ENSMUST00000159938.2	novel	0.20	3	12	3	12	y	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.10	1	9	1	9	n	0.25	3	9	3	9	y	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	0.14	1	6	1	6	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.00	0	15	0	15	n	ENSMUSG00000022821.14	Hgd	chr16	protein_coding	homogentisate 1, 2-dioxygenase
novel_NIR_7661	chr16	37450680	37452038	+	37444745	37452038	A5SS	ENSMUST00000159938.2	novel	0.54	14	12	14	12	y	0.40	4	6	4	6	y	0.43	3	4	3	4	y	0.44	7	9	7	9	y	0.36	5	9	5	9	y	-	-	-	-	-	-	0.14	1	6	1	6	n	1.00	1	0	1	0	n	0.25	2	6	2	6	y	0.50	5	5	5	5	y	0.70	7	3	7	3	y	0.21	4	15	4	15	y	ENSMUSG00000022821.14	Hgd	chr16	protein_coding	homogentisate 1, 2-dioxygenase
novel_NIR_7662	chr16	37674877	37676129	-	37674877	37676183	A5SS	ENSMUST00000205465.2	novel	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.07	1	13	1	13	n	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.18	2	9	2	9	y	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.14	2	12	2	12	n	0.00	0	12	0	12	n	0.25	4	12	4	12	y	ENSMUSG00000108763.2	Gm36028	chr16	protein_coding	predicted gene, 36028
novel_NIR_7663	chr16	37689342	37697416	+	37689342	37697411	A3SS	ENSMUST00000078717.7	novel	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	16	0	16	n	0.06	1	15	1	15	n	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.15	2	11	2	11	y	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	ENSMUSG00000034158.10	Lrrc58	chr16	protein_coding	leucine rich repeat containing 58
novel_NIR_7664	chr16	3812784	3816982	-	3812784	3813558	5pMXE	ENSMUST00000156542.8	novel	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.75	3	1	3	1	y	0.12	1	7	1	7	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000039738.17	Slx4	chr16	protein_coding	SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae)
novel_NIR_7665	chr16	3812784	3816982	-	3812784;3813741	3813558;3816982	ES	ENSMUST00000040790.14	novel	0.80	2	0.5	2	1;0	y	0.00	0	0.5	0	1;0	n	0.00	0	6.5	0	11;2	n	0.00	0	3.0	0	6;0	n	0.50	3	3.0	3	1;5	y	0.18	1	4.5	1	7;2	n	0.00	0	0.5	0	1;0	n	0.00	0	2.0	0	4;0	n	0.00	0	2.0	0	3;1	n	0.00	0	3.5	0	4;3	n	0.00	0	2.0	0	3;1	n	0.00	0	3.5	0	3;4	n	ENSMUSG00000039738.17	Slx4	chr16	protein_coding	SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae)
novel_NIR_7666	chr16	3819542	3821391	-	3819542	3821422	A5SS	ENSMUST00000171658.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000039738.17	Slx4	chr16	protein_coding	SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae)
novel_NIR_7667	chr16	3819542	3821391	-	3819542	3821596	A5SS	ENSMUST00000171762.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	4	0	4	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000039738.17	Slx4	chr16	protein_coding	SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae)
novel_NIR_7668	chr16	38277898	38279339	+	38276074	38279339	A5SS	ENSMUST00000231716.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000075122.6	Cd80	chr16	protein_coding	CD80 antigen
novel_NIR_7669	chr16	38369758	38370445	-	38369998	38370445	A3SS	ENSMUST00000153187.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.25	2	6	2	6	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000034064.15	Poglut1	chr16	protein_coding	protein O-glucosyltransferase 1
novel_NIR_7670	chr16	38383409	38384477	+	38379124	38384477	A5SS	ENSMUST00000163884.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000002845.15	Tmem39a	chr16	protein_coding	transmembrane protein 39a
novel_NIR_7671	chr16	38396188;38399055	38399006;38402332	+	38396188	38402332	cassetteExon	ENSMUST00000163884.8	novel	0.00	0.0	26	0;0	26	n	0.00	0.0	30	0;0	30	n	0.11	7.5	63	11;4	63	n	0.00	0.0	31	0;0	31	n	0.09	4.0	41	6;2	41	n	0.22	6.5	23	4;9	23	y	0.09	2.5	26	4;1	26	n	0.02	0.5	27	1;0	27	n	0.05	1.0	18	1;1	18	n	0.11	3.0	24	4;2	24	n	0.03	0.5	19	1;0	19	n	0.12	2.0	15	3;1	15	n	ENSMUSG00000002845.15	Tmem39a	chr16	protein_coding	transmembrane protein 39a
novel_NIR_7672	chr16	38405646	38405742	+	38402486	38405742	A5SS	ENSMUST00000171687.8	novel	0.00	0	2	0	2	n	0.14	1	6	1	6	n	0.50	3	3	3	3	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.14	1	6	1	6	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	ENSMUSG00000002845.15	Tmem39a	chr16	protein_coding	transmembrane protein 39a
novel_NIR_7673	chr16	38406770	38407561	+	38406770	38411274	A3SS	ENSMUST00000169554.8	novel	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000002845.15	Tmem39a	chr16	protein_coding	transmembrane protein 39a
novel_NIR_7674	chr16	3852539	3854343	-	3852539	3855208	A5SS	ENSMUST00000150906.2	novel	0.50	1	1	1	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000084790.2	Gm15879	chr16	lncRNA	predicted gene 15879
novel_NIR_7675	chr16	3860372	3861817	-	3858354	3861817	A3SS	ENSMUST00000137945.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000005981.12	Trap1	chr16	protein_coding	TNF receptor-associated protein 1
novel_NIR_7676	chr16	38718207	38827496	+	38722009	38827496	5pMXE	ENSMUST00000114706.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022790.15	Igsf11	chr16	protein_coding	immunoglobulin superfamily, member 11
novel_NIR_7677	chr16	38807747	38827496	+	38722009	38827496	A5SS	ENSMUST00000114706.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022790.15	Igsf11	chr16	protein_coding	immunoglobulin superfamily, member 11
novel_NIR_7678	chr16	4097256	4112527	-	4106953	4112527	3pMXE	ENSMUST00000117801.8	novel	0.00	0	16	0	16	n	0.00	0	16	0	16	n	0.00	0	26	0	26	n	0.00	0	23	0	23	n	0.02	1	47	1	47	n	0.15	2	11	2	11	y	0.00	0	13	0	13	n	0.00	0	18	0	18	n	0.00	0	19	0	19	n	0.00	0	39	0	39	n	0.00	0	18	0	18	n	0.00	0	28	0	28	n	ENSMUSG00000005580.12	Adcy9	chr16	protein_coding	adenylate cyclase 9
novel_NIR_7679	chr16	4103702	4112527	-	4106953	4112527	3pMXE	ENSMUST00000117801.8	novel	0.00	0	16	0	16	n	0.16	3	16	3	16	y	0.00	0	26	0	26	n	0.04	1	23	1	23	n	0.00	0	47	0	47	n	0.00	0	11	0	11	n	0.07	1	13	1	13	n	0.00	0	18	0	18	n	0.05	1	19	1	19	n	0.00	0	39	0	39	n	0.00	0	18	0	18	n	0.15	5	28	5	28	y	ENSMUSG00000005580.12	Adcy9	chr16	protein_coding	adenylate cyclase 9
novel_NIR_7680	chr16	4130653	4235717	-	4130653;4141821	4141631;4235717	ES	ENSMUST00000117801.8	novel	0.10	2	18.5	2	25;12	n	0.00	0	9.0	0	9;9	n	0.06	1	16.5	1	24;9	n	0.00	0	24.5	0	28;21	n	0.15	4	22.0	4	26;18	y	0.08	1	12.0	1	14;10	n	0.04	1	25.5	1	25;26	n	0.05	1	20.5	1	27;14	n	0.20	4	16.5	4	16;17	y	0.00	0	36.0	0	43;29	n	0.06	1	16.5	1	20;13	n	0.00	0	22.0	0	23;21	n	ENSMUSG00000005580.12	Adcy9	chr16	protein_coding	adenylate cyclase 9
novel_NIR_7681	chr16	4137378	4141631	-	4130653	4141631	A3SS	ENSMUST00000117801.8	novel	0.00	0	25	0	25	n	0.25	3	9	3	9	y	0.04	1	24	1	24	n	0.00	0	28	0	28	n	0.00	0	26	0	26	n	0.07	1	14	1	14	n	0.00	0	25	0	25	n	0.00	0	27	0	27	n	0.00	0	16	0	16	n	0.00	0	43	0	43	n	0.00	0	20	0	20	n	0.00	0	23	0	23	n	ENSMUSG00000005580.12	Adcy9	chr16	protein_coding	adenylate cyclase 9
novel_NIR_7682	chr16	4138732	4141631	-	4130653	4141631	A3SS	ENSMUST00000117801.8	novel	0.00	0	25	0	25	n	0.18	2	9	2	9	y	0.00	0	24	0	24	n	0.00	0	28	0	28	n	0.00	0	26	0	26	n	0.00	0	14	0	14	n	0.00	0	25	0	25	n	0.00	0	27	0	27	n	0.00	0	16	0	16	n	0.00	0	43	0	43	n	0.00	0	20	0	20	n	0.00	0	23	0	23	n	ENSMUSG00000005580.12	Adcy9	chr16	protein_coding	adenylate cyclase 9
novel_NIR_7683	chr16	42706786	42711872	-	42706751	42711872	A3SS	ENSMUST00000231971.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	1.00	1	0	1	0	n	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	ENSMUSG00000116903.2	Gm19522	chr16	lncRNA	predicted gene, 19522
novel_NIR_7684	chr16	42712016	42717309	-	42712038	42717309	A3SS	ENSMUST00000231971.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000116903.2	Gm19522	chr16	lncRNA	predicted gene, 19522
novel_NIR_7685	chr16	43183539	43184211	+	43183539	43283310	A3SS	ENSMUST00000141941.8	novel	-	-	-	-	-	-	0.00	0	5	0	5	n	0.22	2	7	2	7	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000022708.17	Zbtb20	chr16	protein_coding	zinc finger and BTB domain containing 20
novel_NIR_7686	chr16	43283349	43287166	+	43283349	43328522	A3SS	ENSMUST00000141941.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022708.17	Zbtb20	chr16	protein_coding	zinc finger and BTB domain containing 20
novel_NIR_7687	chr16	43283349	43287166	+	43283349	43390044	A3SS	ENSMUST00000132881.8	novel	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	3	0	3	n	0.33	2	4	2	4	y	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	ENSMUSG00000022708.17	Zbtb20	chr16	protein_coding	zinc finger and BTB domain containing 20
novel_NIR_7688	chr16	43283349	43382076	+	43283349	43328522	A3SS&ES	ENSMUST00000141941.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022708.17	Zbtb20	chr16	protein_coding	zinc finger and BTB domain containing 20
novel_NIR_7689	chr16	43283349	43382076	+	43283349	43390044	A3SS	ENSMUST00000132881.8	novel	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.20	2	8	2	8	y	0.00	0	10	0	10	n	0.00	0	8	0	8	n	ENSMUSG00000022708.17	Zbtb20	chr16	protein_coding	zinc finger and BTB domain containing 20
novel_NIR_7690	chr16	43397556	43397928	+	43397556	43397924	A3SS	ENSMUST00000114694.9	novel	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.17	1	5	1	5	n	0.25	2	6	2	6	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000022708.17	Zbtb20	chr16	protein_coding	zinc finger and BTB domain containing 20
novel_NIR_7691	chr16	43689460	43691611	-	43689460	43691142	A5SS	ENSMUST00000156568.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	3	0	3	0	y	1.00	2	0	2	0	y	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000022704.17	Qtrt2	chr16	protein_coding	queuine tRNA-ribosyltransferase accessory subunit 2
novel_NIR_7692	chr16	43689460	43691611	-	43689460	43691984	A5SS	ENSMUST00000023387.14	novel	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.43	3	4	3	4	y	0.15	2	11	2	11	y	0.00	0	4	0	4	n	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	ENSMUSG00000022704.17	Qtrt2	chr16	protein_coding	queuine tRNA-ribosyltransferase accessory subunit 2
novel_NIR_7693	chr16	4369964	4371419	-	4369964	4370652	5pMXE	ENSMUST00000229956.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000005718.9	Tfap4	chr16	protein_coding	transcription factor AP4
novel_NIR_7694	chr16	4369964	4371419	-	4369964	4376529	A5SS	ENSMUST00000230875.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000005718.9	Tfap4	chr16	protein_coding	transcription factor AP4
novel_NIR_7695	chr16	4369964	4371419	-	4369964	4377292	A5SS	ENSMUST00000005862.9	novel	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.17	2	10	2	10	y	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	ENSMUSG00000005718.9	Tfap4	chr16	protein_coding	transcription factor AP4
novel_NIR_7696	chr16	4369964	4374856	-	4369964	4370652	5pMXE	ENSMUST00000229956.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000005718.9	Tfap4	chr16	protein_coding	transcription factor AP4
novel_NIR_7697	chr16	4369964	4374856	-	4369964	4376529	A5SS	ENSMUST00000230875.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.75	3	1	3	1	y	ENSMUSG00000005718.9	Tfap4	chr16	protein_coding	transcription factor AP4
novel_NIR_7698	chr16	4369964	4374856	-	4369964	4377292	A5SS	ENSMUST00000005862.9	novel	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.00	0	5	0	5	n	0.23	3	10	3	10	y	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.06	1	15	1	15	n	0.00	0	6	0	6	n	0.25	3	9	3	9	y	ENSMUSG00000005718.9	Tfap4	chr16	protein_coding	transcription factor AP4
novel_NIR_7699	chr16	4369964	4375845	-	4369964	4370652	5pMXE	ENSMUST00000229956.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000005718.9	Tfap4	chr16	protein_coding	transcription factor AP4
novel_NIR_7700	chr16	4369964	4375845	-	4369964	4376529	A5SS	ENSMUST00000230875.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000005718.9	Tfap4	chr16	protein_coding	transcription factor AP4
novel_NIR_7701	chr16	4369964	4375845	-	4369964	4377292	A5SS	ENSMUST00000005862.9	novel	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.20	2	8	2	8	y	0.06	1	15	1	15	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	ENSMUSG00000005718.9	Tfap4	chr16	protein_coding	transcription factor AP4
novel_NIR_7702	chr16	4369964	4376451	-	4369964	4370652	5pMXE	ENSMUST00000229956.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000005718.9	Tfap4	chr16	protein_coding	transcription factor AP4
novel_NIR_7703	chr16	4369964	4376451	-	4369964	4376529	A5SS	ENSMUST00000230875.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000005718.9	Tfap4	chr16	protein_coding	transcription factor AP4
novel_NIR_7704	chr16	4369964	4376451	-	4369964	4377292	A5SS	ENSMUST00000005862.9	novel	0.25	2	6	2	6	y	-	-	-	-	-	-	0.00	0	6	0	6	n	0.20	1	4	1	4	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.10	1	9	1	9	n	ENSMUSG00000005718.9	Tfap4	chr16	protein_coding	transcription factor AP4
novel_NIR_7705	chr16	43759467	43763867	+	43759526	43763867	A5SS	ENSMUST00000132859.8	novel	0.00	0	3	0	3	n	0.33	2	4	2	4	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	10	0	10	n	ENSMUSG00000022701.19	Ccdc191	chr16	protein_coding	coiled-coil domain containing 191
novel_NIR_7706	chr16	43759526	43777181	+	43759526	43763867	3pMXE	ENSMUST00000145999.2	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	10	0	10	n	ENSMUSG00000022701.19	Ccdc191	chr16	protein_coding	coiled-coil domain containing 191
novel_NIR_7707	chr16	43765183	43767032	+	43765093	43767032	A5SS	ENSMUST00000132859.8	novel	0.00	0	6	0	6	n	0.17	1	5	1	5	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.13	2	13	2	13	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.14	1	6	1	6	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.33	2	4	2	4	y	ENSMUSG00000022701.19	Ccdc191	chr16	protein_coding	coiled-coil domain containing 191
novel_NIR_7708	chr16	43860521	43860813	-	43860521	43879465	A5SS	ENSMUST00000214098.2	novel	0.59	16	11	16	11	y	0.52	11	10	11	10	y	0.18	10	46	10	46	y	0.44	19	24	19	24	y	0.66	25	13	25	13	y	0.31	8	18	8	18	y	0.54	15	13	15	13	y	0.36	8	14	8	14	y	0.50	12	12	12	12	y	0.46	13	15	13	15	y	0.33	2	4	2	4	y	0.37	10	17	10	17	y	ENSMUSG00000036292.15	Gramd1c	chr16	protein_coding	GRAM domain containing 1C
novel_NIR_7709	chr16	43937245	43959320	-	43937245	43959311	A5SS	ENSMUST00000063661.13	novel	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	14	0	14	n	0.20	2	8	2	8	y	0.28	5	13	5	13	y	0.00	0	7	0	7	n	0.08	1	11	1	11	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.50	2	2	2	2	y	0.20	1	4	1	4	n	ENSMUSG00000052459.14	Atp6v1a	chr16	protein_coding	ATPase, H+ transporting, lysosomal V1 subunit A
novel_NIR_7710	chr16	43937245	43959320	-	43937245	43959355	A5SS	ENSMUST00000124102.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	2	2	2	2	y	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000052459.14	Atp6v1a	chr16	protein_coding	ATPase, H+ transporting, lysosomal V1 subunit A
novel_NIR_7711	chr16	43937245	43959320	-	43937245	43959825	A5SS	ENSMUST00000137557.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000052459.14	Atp6v1a	chr16	protein_coding	ATPase, H+ transporting, lysosomal V1 subunit A
novel_NIR_7712	chr16	43937245	43959320	-	43937245	43959874	A5SS	ENSMUST00000147025.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.67	2	1	2	1	y	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	2	0	2	0	n	1.00	1	0	1	0	n	ENSMUSG00000052459.14	Atp6v1a	chr16	protein_coding	ATPase, H+ transporting, lysosomal V1 subunit A
novel_NIR_7713	chr16	43960797	43976773	+	43965281	43976773	A5SS&ES	ENSMUST00000159514.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.60	3	2	3	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022698.18	Naa50	chr16	protein_coding	N(alpha)-acetyltransferase 50, NatE catalytic subunit
novel_NIR_7714	chr16	43993873	43998520	+	43993873	44019267	A3SS	ENSMUST00000119746.8	novel	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.25	2	6	2	6	y	0.00	0	14	0	14	n	0.00	0	15	0	15	n	0.09	1	10	1	10	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	ENSMUSG00000068284.15	Usf3	chr16	protein_coding	upstream transcription factor family member 3
novel_NIR_7715	chr16	44018671	44019267	+	43993873	44019267	A5SS	ENSMUST00000119746.8	novel	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.06	1	15	1	15	n	0.00	0	10	0	10	n	0.20	1	4	1	4	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.27	3	8	3	8	y	0.00	0	4	0	4	n	0.22	2	7	2	7	y	ENSMUSG00000068284.15	Usf3	chr16	protein_coding	upstream transcription factor family member 3
novel_NIR_7716	chr16	44193028	44197161	+	44193028	44193826	3pMXE	ENSMUST00000145663.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000043065.13	Spice1	chr16	protein_coding	spindle and centriole associated protein 1
novel_NIR_7717	chr16	44193028	44197161	+	44193028;44196155	44196005;44197161	ES	ENSMUST00000050897.7	novel	0.00	0	2.5	0	1;4	n	0.00	0	7.0	0	6;8	n	0.00	0	3.5	0	4;3	n	0.25	2	6.0	2	5;7	y	0.00	0	10.0	0	6;14	n	0.00	0	0.5	0	0;1	n	0.00	0	6.5	0	5;8	n	-	-	-	-	-	-	0.00	0	5.0	0	2;8	n	0.31	2	4.5	2	3;6	y	0.00	0	3.0	0	5;1	n	0.17	1	5.0	1	5;5	n	ENSMUSG00000043065.13	Spice1	chr16	protein_coding	spindle and centriole associated protein 1
novel_NIR_7718	chr16	44196151	44197161	+	44196155	44197161	A5SS	ENSMUST00000050897.7	novel	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.40	2	3	2	3	y	0.00	0	7	0	7	n	0.07	1	14	1	14	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	ENSMUSG00000043065.13	Spice1	chr16	protein_coding	spindle and centriole associated protein 1
novel_NIR_7719	chr16	4451265	4451578	-	4450385	4451578	A3SS	ENSMUST00000151156.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000039637.16	Coro7	chr16	protein_coding	coronin 7
novel_NIR_7720	chr16	4451265	4451578	-	4451260	4451578	A3SS	ENSMUST00000139072.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000039637.16	Coro7	chr16	protein_coding	coronin 7
novel_NIR_7721	chr16	4451265	4451578	-	4451294	4451578	A3SS	ENSMUST00000038552.13	novel	0.00	0	21	0	21	n	0.00	0	22	0	22	n	0.00	0	27	0	27	n	0.00	0	19	0	19	n	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.00	0	31	0	31	n	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.00	0	37	0	37	n	0.20	3	12	3	12	y	0.00	0	23	0	23	n	ENSMUSG00000039637.16	Coro7	chr16	protein_coding	coronin 7
novel_NIR_7722	chr16	4453302	4456534	-	4453302	4472874	A5SS	ENSMUST00000038552.13	novel	0.00	0	22	0	22	n	0.00	0	13	0	13	n	0.00	0	16	0	16	n	0.00	0	27	0	27	n	0.04	1	26	1	26	n	0.00	0	5	0	5	n	0.05	1	21	1	21	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.27	7	19	7	19	y	0.09	1	10	1	10	n	0.00	0	10	0	10	n	ENSMUSG00000039637.16	Coro7	chr16	protein_coding	coronin 7
novel_NIR_7723	chr16	4453302	4456534	-	4453324	4456534	A3SS	ENSMUST00000135823.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	7	0	7	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000039637.16	Coro7	chr16	protein_coding	coronin 7
novel_NIR_7724	chr16	44545114	44547391	+	44544831	44547391	A5SS	ENSMUST00000048788.14	novel	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.60	6	4	6	4	y	0.17	1	5	1	5	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.14	1	6	1	6	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.09	1	10	1	10	n	ENSMUSG00000036208.14	Nepro	chr16	protein_coding	nucleolus and neural progenitor protein
novel_NIR_7725	chr16	44545612	44547391	+	44544831	44547391	A5SS	ENSMUST00000048788.14	novel	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.33	2	4	2	4	y	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.00	0	10	0	10	n	ENSMUSG00000036208.14	Nepro	chr16	protein_coding	nucleolus and neural progenitor protein
novel_NIR_7726	chr16	4472267	4472874	-	4453302	4472874	A3SS	ENSMUST00000038552.13	novel	0.15	4	22	4	22	y	0.00	0	13	0	13	n	0.06	1	16	1	16	n	0.07	2	27	2	27	n	0.04	1	26	1	26	n	0.29	2	5	2	5	y	0.00	0	21	0	21	n	0.09	1	10	1	10	n	0.25	3	9	3	9	y	0.10	2	19	2	19	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	ENSMUSG00000039637.16	Coro7	chr16	protein_coding	coronin 7
novel_NIR_7727	chr16	4472267	4472874	-	4456675	4472874	A3SS	ENSMUST00000135823.8	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039637.16	Coro7	chr16	protein_coding	coronin 7
novel_NIR_7728	chr16	4472267	4472874	-	4470625	4472874	A3SS	ENSMUST00000090480.6	novel	1.00	4	0	4	0	y	0.00	0	1	0	1	n	0.25	1	3	1	3	n	1.00	2	0	2	0	y	0.33	1	2	1	2	n	0.67	2	1	2	1	y	0.00	0	3	0	3	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.40	2	3	2	3	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000039637.16	Coro7	chr16	protein_coding	coronin 7
novel_NIR_7729	chr16	4520172	4524437	+	4520172	4523708	A3SS&ES	ENSMUST00000060067.12	novel	0.00	0	45	0	45	n	0.15	7	39	7	39	y	0.18	17	79	17	79	y	0.15	8	45	8	45	y	0.12	9	68	9	68	n	0.16	8	43	8	43	y	0.00	0	44	0	44	n	0.00	0	33	0	33	n	0.16	5	26	5	26	y	0.29	15	36	15	36	y	0.08	4	46	4	46	n	0.07	2	26	2	26	n	ENSMUSG00000004069.18	Dnaja3	chr16	protein_coding	DnaJ heat shock protein family (Hsp40) member A3
novel_NIR_7730	chr16	4523824	4524437	+	4523824	4524432	A3SS	ENSMUST00000060067.12	novel	0.00	0	50	0	50	n	0.00	0	44	0	44	n	0.00	0	58	0	58	n	0.00	0	39	0	39	n	0.00	0	48	0	48	n	0.00	0	39	0	39	n	0.15	10	55	10	55	y	0.00	0	29	0	29	n	0.00	0	40	0	40	n	0.00	0	40	0	40	n	0.00	0	35	0	35	n	0.00	0	27	0	27	n	ENSMUSG00000004069.18	Dnaja3	chr16	protein_coding	DnaJ heat shock protein family (Hsp40) member A3
novel_NIR_7731	chr16	45249842	45262810	-	45240306	45262810	A3SS	ENSMUST00000144346.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000053182.12	Gm609	chr16	protein_coding	predicted gene 609
novel_NIR_7732	chr16	4544335	4581593	+	4544335	4582470	A3SS	ENSMUST00000154117.2	novel	0.00	0	5	0	5	n	0.50	1	1	1	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000004070.16	Hmox2	chr16	protein_coding	heme oxygenase 2
novel_NIR_7733	chr16	45592630	45595307	-	45592638	45595307	A3SS	ENSMUST00000036355.13	novel	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	15	0	15	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.17	2	10	2	10	y	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
novel_NIR_7734	chr16	45594708	45595307	-	45594708	45595331	A5SS	ENSMUST00000076333.12	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
novel_NIR_7735	chr16	45595381	45598076	-	45592638	45598076	A3SS	ENSMUST00000131003.8	novel	0.00	0	31	0	31	n	0.00	0	14	0	14	n	0.20	6	24	6	24	y	0.00	0	20	0	20	n	0.08	4	48	4	48	n	0.00	0	18	0	18	n	0.06	2	33	2	33	n	0.03	1	32	1	32	n	0.00	0	29	0	29	n	0.09	4	43	4	43	n	0.09	2	20	2	20	n	0.15	5	29	5	29	y	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
novel_NIR_7736	chr16	45595381	45598076	-	45595450	45598076	A3SS	ENSMUST00000036355.13	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.46	6	7	6	7	y	0.00	0	5	0	5	n	0.33	4	8	4	8	y	0.00	0	4	0	4	n	0.29	2	5	2	5	y	0.12	1	7	1	7	n	0.00	0	1	0	1	n	0.36	4	7	4	7	y	0.67	2	1	2	1	y	0.45	5	6	5	6	y	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
novel_NIR_7737	chr16	45596395	45598076	-	45595450	45598076	A3SS	ENSMUST00000036355.13	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.22	2	7	2	7	y	0.17	1	5	1	5	n	0.20	2	8	2	8	y	0.20	1	4	1	4	n	0.17	1	5	1	5	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.50	1	1	1	1	n	0.00	0	6	0	6	n	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
novel_NIR_7738	chr16	45601820	45621855	-	45601820	45609352	5pMXE	ENSMUST00000133111.3	novel	0.21	7	26	7	26	y	0.00	0	25	0	25	n	0.00	0	30	0	30	n	0.30	13	30	13	30	y	0.18	9	41	9	41	y	0.00	0	10	0	10	n	0.11	6	48	6	48	n	0.12	5	35	5	35	n	0.16	6	31	6	31	y	0.12	8	60	8	60	n	0.56	9	7	9	7	y	0.18	9	42	9	42	y	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
novel_NIR_7739	chr16	45601820	45621855	-	45601820;45609480	45609352;45621855	ES	ENSMUST00000036355.13	novel	0.24	7	22.0	7	26;18	y	0.00	0	24.0	0	25;23	n	0.00	0	30.5	0	30;31	n	0.33	13	26.5	13	30;23	y	0.17	9	43.0	9	41;45	y	0.00	0	14.0	0	10;18	n	0.15	6	34.5	6	48;21	y	0.14	5	30.0	5	35;25	n	0.18	6	26.5	6	31;22	y	0.13	8	54.5	8	60;49	n	0.38	9	15.0	9	7;23	y	0.19	9	39.5	9	42;37	y	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
novel_NIR_7740	chr16	45646458	45664902	-	45646458	45664571	5pMXE	ENSMUST00000036355.13	novel	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.04	1	27	1	27	n	0.50	1	1	1	1	n	0.00	0	17	0	17	n	0.20	1	4	1	4	n	0.30	3	7	3	7	y	0.00	0	6	0	6	n	0.20	1	4	1	4	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
novel_NIR_7741	chr16	45646458	45664902	-	45646458	45680685	A5SS	ENSMUST00000134802.8	novel	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.07	1	13	1	13	n	0.00	0	17	0	17	n	0.17	1	5	1	5	n	0.38	3	5	3	5	y	0.00	0	5	0	5	n	0.08	1	11	1	11	n	0.00	0	19	0	19	n	0.00	0	5	0	5	n	0.00	0	17	0	17	n	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
novel_NIR_7742	chr16	45646458	45669730	-	45646458	45664571	5pMXE	ENSMUST00000036355.13	novel	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	27	0	27	n	0.00	0	1	0	1	n	0.00	0	17	0	17	n	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.14	1	6	1	6	n	0.00	0	4	0	4	n	0.29	2	5	2	5	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
novel_NIR_7743	chr16	45647589	45680685	-	45646458	45680685	A3SS	ENSMUST00000134802.8	novel	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.11	2	17	2	17	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.15	2	11	2	11	y	0.05	1	19	1	19	n	0.17	1	5	1	5	n	0.00	0	17	0	17	n	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
novel_NIR_7744	chr16	45647589	45680685	-	45647589	45664571	5pMXE	ENSMUST00000125433.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
novel_NIR_7745	chr16	45680799	45727715	-	45680799	45694165	A5SS&ES	ENSMUST00000136405.2	novel	0.50	4	4	4	4	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.40	2	3	2	3	y	0.18	2	9	2	9	y	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.18	3	14	3	14	y	0.00	0	2	0	2	n	0.29	2	5	2	5	y	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
novel_NIR_7746	chr16	45680799	45727715	-	45680799	45773739	A5SS	ENSMUST00000134802.8	novel	0.80	4	1	4	1	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.60	3	2	3	2	y	-	-	-	-	-	-	0.50	2	2	2	2	y	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
novel_NIR_7747	chr16	45680799;45700107	45699985;45773739	-	45680799	45773739	cassetteExon	ENSMUST00000134802.8	novel	0.33	0.5	1	1;0	1	n	1.00	1.0	0	0;2	0	n	0.00	0.0	3	0;0	3	n	0.00	0.0	3	0;0	3	n	0.60	4.5	3	6;3	3	y	-	-	-	-	-	-	0.56	2.5	2	4;1	2	n	1.00	0.5	0	0;1	0	n	1.00	0.5	0	0;1	0	n	0.76	6.5	2	6;7	2	y	-	-	-	-	-	-	0.00	0.0	2	0;0	2	n	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
novel_NIR_7748	chr16	45680799;45700107	45699985;45773739	-	45680799;45694235	45694165;45773739	MXE	ENSMUST00000136405.2	novel	0.17	0.5	2.5	1;0	4;1	n	0.67	1.0	0.5	0;2	1;0	n	0.00	0.0	2.0	0;0	4;0	n	0.00	0.0	3.0	0;0	3;3	n	0.45	4.5	5.5	6;3	9;2	y	-	-	-	-	-	-	0.36	2.5	4.5	4;1	5;4	n	1.00	0.5	0.0	0;1	0;0	n	0.25	0.5	1.5	0;1	3;0	n	0.43	6.5	8.5	6;7	14;3	y	0.00	0.0	1.0	0;0	2;0	n	0.00	0.0	4.5	0;0	5;4	n	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
novel_NIR_7749	chr16	45689819	45694165	-	45680799	45694165	A3SS	ENSMUST00000136405.2	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.40	2	3	2	3	y	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	14	0	14	n	0.00	0	2	0	2	n	0.29	2	5	2	5	y	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
novel_NIR_7750	chr16	45694235	45694593	-	45694235	45773739	A5SS	ENSMUST00000136405.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
novel_NIR_7751	chr16	45694235	45699985	-	45694235	45773739	A5SS	ENSMUST00000136405.2	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	4	4	4	4	n	1.00	1	0	1	0	n	1.00	2	0	2	0	n	0.62	5	3	5	3	n	-	-	-	-	-	-	0.33	2	4	2	4	y	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
novel_NIR_7752	chr16	45694235;45700107	45699985;45773739	-	45694235	45773739	cassetteExon	ENSMUST00000136405.2	novel	0.33	0.5	1	1;0	1	n	1.00	1.0	0	0;2	0	n	-	-	-	-	-	-	0.14	0.5	3	1;0	3	n	0.43	1.5	2	0;3	2	n	-	-	-	-	-	-	0.38	2.5	4	4;1	4	n	1.00	1.0	0	1;1	0	n	1.00	1.5	0	2;1	0	n	0.67	6.0	3	5;7	3	y	-	-	-	-	-	-	0.20	1.0	4	2;0	4	n	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
novel_NIR_7753	chr16	45700107	45773739	-	45680799	45773739	A3SS	ENSMUST00000134802.8	novel	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.50	3	3	3	3	n	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.78	7	2	7	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
novel_NIR_7754	chr16	45700107	45773739	-	45694235	45773739	A3SS	ENSMUST00000136405.2	novel	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.60	3	2	3	2	n	-	-	-	-	-	-	0.20	1	4	1	4	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.70	7	3	7	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
novel_NIR_7755	chr16	45714717	45773739	-	45680799	45773739	A3SS	ENSMUST00000134802.8	novel	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.40	2	3	2	3	y	0.25	1	3	1	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.67	4	2	4	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.33	1	2	1	2	n	1.00	2	0	2	0	y	0.60	3	2	3	2	y	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
novel_NIR_7756	chr16	45714717	45773739	-	45694235	45773739	A3SS	ENSMUST00000136405.2	novel	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.25	1	3	1	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	4	4	4	4	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.25	1	3	1	3	n	1.00	2	0	2	0	y	0.43	3	4	3	4	y	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
novel_NIR_7757	chr16	45721923	45773739	-	45680799	45773739	A3SS	ENSMUST00000134802.8	novel	0.75	3	1	3	1	y	-	-	-	-	-	-	0.67	6	3	6	3	y	0.25	1	3	1	3	n	0.70	7	3	7	3	y	1.00	4	0	4	0	y	0.88	14	2	14	2	y	1.00	5	0	5	0	y	1.00	2	0	2	0	y	0.78	7	2	7	2	y	1.00	6	0	6	0	y	0.60	3	2	3	2	y	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
novel_NIR_7758	chr16	45721923	45773739	-	45694235	45773739	A3SS	ENSMUST00000136405.2	novel	0.75	3	1	3	1	y	-	-	-	-	-	-	1.00	6	0	6	0	y	0.25	1	3	1	3	n	0.78	7	2	7	2	y	1.00	4	0	4	0	y	0.78	14	4	14	4	y	1.00	5	0	5	0	y	1.00	2	0	2	0	y	0.70	7	3	7	3	y	1.00	6	0	6	0	y	0.43	3	4	3	4	y	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
novel_NIR_7759	chr16	45721923	45773739	-	45721923;45727820	45727715;45773739	ES	ENSMUST00000136317.2	novel	0.06	3	50.5	3	59;42	n	0.00	0	74.0	0	56;92	n	0.12	6	42.5	6	47;38	n	0.02	1	45.5	1	34;57	n	0.11	7	55.0	7	47;63	n	0.24	4	12.5	4	9;16	y	0.16	14	74.0	14	73;75	y	0.20	5	20.5	5	17;24	y	0.04	2	54.0	2	42;66	n	0.08	7	84.5	7	60;109	n	0.07	6	75.0	6	70;80	n	0.05	3	63.0	3	52;74	n	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
novel_NIR_7760	chr16	45724179	45727715	-	45721923	45727715	A3SS	ENSMUST00000136317.2	novel	0.06	4	59	4	59	n	0.03	2	56	2	56	n	0.00	0	47	0	47	n	0.11	4	34	4	34	n	0.08	4	47	4	47	n	0.18	2	9	2	9	y	0.04	3	73	3	73	n	0.11	2	17	2	17	n	0.09	4	42	4	42	n	0.03	2	60	2	60	n	0.12	10	70	10	70	n	0.02	1	52	1	52	n	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
novel_NIR_7761	chr16	45731376	45773739	-	45680799	45773739	A3SS	ENSMUST00000134802.8	novel	0.80	4	1	4	1	y	1.00	3	0	3	0	y	0.00	0	3	0	3	n	0.77	10	3	10	3	y	0.40	2	3	2	3	y	-	-	-	-	-	-	0.50	2	2	2	2	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.78	7	2	7	2	y	-	-	-	-	-	-	0.50	2	2	2	2	y	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
novel_NIR_7762	chr16	45731376	45773739	-	45694235	45773739	A3SS	ENSMUST00000136405.2	novel	0.80	4	1	4	1	y	1.00	3	0	3	0	y	-	-	-	-	-	-	0.77	10	3	10	3	y	0.50	2	2	2	2	y	-	-	-	-	-	-	0.33	2	4	2	4	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.70	7	3	7	3	y	-	-	-	-	-	-	0.33	2	4	2	4	y	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
novel_NIR_7763	chr16	45740061	45773739	-	45680799	45773739	A3SS	ENSMUST00000134802.8	novel	0.86	6	1	6	1	y	1.00	1	0	1	0	n	0.50	3	3	3	3	y	0.57	4	3	4	3	y	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.67	4	2	4	2	y	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
novel_NIR_7764	chr16	45740061	45773739	-	45694235	45773739	A3SS	ENSMUST00000136405.2	novel	0.86	6	1	6	1	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.57	4	3	4	3	y	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	3	0	3	n	1.00	3	0	3	0	y	0.50	4	4	4	4	y	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
novel_NIR_7765	chr16	45747606	45759222	+	45756791	45759222	5pMXE	ENSMUST00000152070.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000085781.2	Gm15640	chr16	lncRNA	predicted gene 15640
novel_NIR_7766	chr16	4574991	4580429	+	4574991	4580423	A3SS	ENSMUST00000121529.2	novel	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	18	0	18	n	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.22	4	14	4	14	y	0.00	0	12	0	12	n	ENSMUSG00000004070.16	Hmox2	chr16	protein_coding	heme oxygenase 2
novel_NIR_7767	chr16	45764770	45773739	-	45680799	45773739	A3SS	ENSMUST00000134802.8	novel	0.67	2	1	2	1	y	-	-	-	-	-	-	0.57	4	3	4	3	y	0.50	3	3	3	3	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.78	7	2	7	2	y	1.00	3	0	3	0	y	0.67	4	2	4	2	y	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
novel_NIR_7768	chr16	45764770	45773739	-	45694235	45773739	A3SS	ENSMUST00000136405.2	novel	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	4	0	4	0	y	0.50	3	3	3	3	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.70	7	3	7	3	y	1.00	3	0	3	0	y	0.50	4	4	4	4	y	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
novel_NIR_7769	chr16	45766076	45768685	+	45766076	45768159	A3SS	ENSMUST00000128159.2	novel	0.00	0	9	0	9	n	0.22	4	14	4	14	y	0.00	0	16	0	16	n	0.08	1	12	1	12	n	0.00	0	34	0	34	n	0.00	0	9	0	9	n	0.00	0	31	0	31	n	0.08	1	11	1	11	n	0.00	0	23	0	23	n	0.05	2	41	2	41	n	0.08	1	11	1	11	n	0.10	2	19	2	19	n	ENSMUSG00000085826.2	Gm15638	chr16	lncRNA	predicted gene 15638
novel_NIR_7770	chr16	45766076	45768685	+	45766076	45768663	A3SS	ENSMUST00000134359.2	novel	0.00	0	9	0	9	n	0.40	4	6	4	6	y	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	15	0	15	n	0.17	1	5	1	5	n	0.00	0	6	0	6	n	0.15	2	11	2	11	y	0.17	1	5	1	5	n	0.17	2	10	2	10	y	ENSMUSG00000085826.2	Gm15638	chr16	lncRNA	predicted gene 15638
novel_NIR_7771	chr16	45766076	45768685	+	45766076	45787237	A3SS	ENSMUST00000154775.2	novel	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000085826.2	Gm15638	chr16	lncRNA	predicted gene 15638
novel_NIR_7772	chr16	45766076	45773374	+	45766076	45768663	3pMXE	ENSMUST00000134359.2	novel	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.17	2	10	2	10	y	ENSMUSG00000085826.2	Gm15638	chr16	lncRNA	predicted gene 15638
novel_NIR_7773	chr16	45766076	45773374	+	45766076	45787237	A3SS	ENSMUST00000154775.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000085826.2	Gm15638	chr16	lncRNA	predicted gene 15638
novel_NIR_7774	chr16	45766076	45773377	+	45766076	45768663	3pMXE	ENSMUST00000134359.2	novel	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.25	2	6	2	6	y	0.39	7	11	7	11	y	0.17	1	5	1	5	n	0.00	0	10	0	10	n	ENSMUSG00000085826.2	Gm15638	chr16	lncRNA	predicted gene 15638
novel_NIR_7775	chr16	45766076	45773377	+	45766076	45787237	A3SS	ENSMUST00000154775.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	7	0	7	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000085826.2	Gm15638	chr16	lncRNA	predicted gene 15638
novel_NIR_7776	chr16	45766076	45773578	+	45766076	45768663	3pMXE	ENSMUST00000134359.2	novel	0.40	6	9	6	9	y	0.57	8	6	8	6	y	0.40	2	3	2	3	y	0.87	20	3	20	3	y	0.29	4	10	4	10	y	0.20	1	4	1	4	n	0.48	14	15	14	15	y	0.29	2	5	2	5	y	0.76	19	6	19	6	y	0.80	45	11	45	11	y	0.75	15	5	15	5	y	0.33	5	10	5	10	y	ENSMUSG00000085826.2	Gm15638	chr16	lncRNA	predicted gene 15638
novel_NIR_7777	chr16	45766076	45773578	+	45766076	45787237	A3SS	ENSMUST00000154775.2	novel	1.00	6	0	6	0	y	1.00	8	0	8	0	y	1.00	2	0	2	0	y	1.00	20	0	20	0	y	0.67	4	2	4	2	y	1.00	1	0	1	0	n	0.93	14	1	14	1	y	1.00	2	0	2	0	y	1.00	19	0	19	0	y	1.00	45	0	45	0	y	1.00	15	0	15	0	y	1.00	5	0	5	0	y	ENSMUSG00000085826.2	Gm15638	chr16	lncRNA	predicted gene 15638
novel_NIR_7778	chr16	45766076	45776690	+	45766076	45768663	3pMXE	ENSMUST00000134359.2	novel	0.47	8	9	8	9	y	0.00	0	6	0	6	n	0.57	4	3	4	3	y	0.00	0	3	0	3	n	0.55	12	10	12	10	y	0.00	0	4	0	4	n	0.55	18	15	18	15	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.50	10	10	10	10	y	ENSMUSG00000085826.2	Gm15638	chr16	lncRNA	predicted gene 15638
novel_NIR_7779	chr16	45766076	45776690	+	45766076	45787237	A3SS	ENSMUST00000154775.2	novel	1.00	8	0	8	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	0.86	12	2	12	2	y	-	-	-	-	-	-	0.95	18	1	18	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	10	0	10	0	y	ENSMUSG00000085826.2	Gm15638	chr16	lncRNA	predicted gene 15638
novel_NIR_7780	chr16	45766076	45776690	+	45766076;45769153	45768159;45776690	ES	ENSMUST00000128159.2	novel	0.64	8	4.5	8	9;0	y	0.00	0	8.5	0	14;3	n	0.32	4	8.5	4	16;1	y	0.00	0	7.5	0	12;3	n	0.38	12	19.5	12	34;5	y	0.00	0	4.5	0	9;0	n	0.51	18	17.5	18	31;4	y	0.00	0	6.0	0	11;1	n	0.00	0	13.0	0	23;3	n	0.00	0	21.0	0	41;1	n	0.00	0	6.5	0	11;2	n	0.50	10	10.0	10	19;1	y	ENSMUSG00000085826.2	Gm15638	chr16	lncRNA	predicted gene 15638
novel_NIR_7781	chr16	45766076;45773675	45773374;45776690	+	45766076;45769153	45768159;45776690	MXE	ENSMUST00000128159.2	novel	0.50	4.5	4.5	0;9	9;0	n	0.37	5.0	8.5	0;10	14;3	n	0.15	1.5	8.5	0;3	16;1	n	0.56	9.5	7.5	0;19	12;3	n	0.11	2.5	19.5	0;5	34;5	n	0.18	1.0	4.5	0;2	9;0	n	0.22	5.0	17.5	0;10	31;4	n	0.14	1.0	6.0	0;2	11;1	n	0.40	8.5	13.0	0;17	23;3	n	0.41	14.5	21.0	0;29	41;1	n	0.48	6.0	6.5	0;12	11;2	n	0.26	3.5	10.0	2;5	19;1	y	ENSMUSG00000085826.2	Gm15638	chr16	lncRNA	predicted gene 15638
novel_NIR_7782	chr16	45766076;45773675	45773377;45776690	+	45766076;45769153	45768159;45776690	MXE	ENSMUST00000128159.2	novel	0.50	4.5	4.5	0;9	9;0	n	0.37	5.0	8.5	0;10	14;3	n	0.15	1.5	8.5	0;3	16;1	n	0.57	10.0	7.5	1;19	12;3	n	0.11	2.5	19.5	0;5	34;5	n	0.18	1.0	4.5	0;2	9;0	n	0.22	5.0	17.5	0;10	31;4	n	0.14	1.0	6.0	0;2	11;1	n	0.42	9.5	13.0	2;17	23;3	y	0.46	18.0	21.0	7;29	41;1	y	0.50	6.5	6.5	1;12	11;2	n	0.20	2.5	10.0	0;5	19;1	n	ENSMUSG00000085826.2	Gm15638	chr16	lncRNA	predicted gene 15638
novel_NIR_7783	chr16	45766076;45773675	45773578;45776690	+	45766076;45769153	45768159;45776690	MXE	ENSMUST00000128159.2	novel	0.62	7.5	4.5	6;9	9;0	y	0.51	9.0	8.5	8;10	14;3	y	0.23	2.5	8.5	2;3	16;1	y	0.72	19.5	7.5	20;19	12;3	y	0.19	4.5	19.5	4;5	34;5	y	0.25	1.5	4.5	1;2	9;0	n	0.41	12.0	17.5	14;10	31;4	y	0.25	2.0	6.0	2;2	11;1	y	0.58	18.0	13.0	19;17	23;3	y	0.64	37.0	21.0	45;29	41;1	y	0.68	13.5	6.5	15;12	11;2	y	0.33	5.0	10.0	5;5	19;1	y	ENSMUSG00000085826.2	Gm15638	chr16	lncRNA	predicted gene 15638
novel_NIR_7784	chr16	45768359	45768663	+	45766076	45768663	A5SS	ENSMUST00000134359.2	novel	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.17	2	10	2	10	y	0.00	0	4	0	4	n	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.17	1	5	1	5	n	0.00	0	10	0	10	n	ENSMUSG00000085826.2	Gm15638	chr16	lncRNA	predicted gene 15638
novel_NIR_7785	chr16	45769153;45773675	45773377;45776690	+	45769153	45776690	cassetteExon	ENSMUST00000128159.2	novel	1.00	4.5	0	0;9	0	n	0.62	5.0	3	0;10	3	n	0.67	2.0	1	1;3	1	n	0.76	9.5	3	0;19	3	n	0.41	3.5	5	2;5	5	y	1.00	1.0	0	0;2	0	n	0.60	6.0	4	2;10	4	y	0.60	1.5	1	1;2	1	n	0.74	8.5	3	0;17	3	n	0.94	14.5	1	0;29	1	n	0.76	6.5	2	1;12	2	n	0.78	3.5	1	2;5	1	y	ENSMUSG00000085826.2	Gm15638	chr16	lncRNA	predicted gene 15638
novel_NIR_7786	chr16	45776539	45776690	+	45769153	45776690	A5SS	ENSMUST00000128159.2	novel	1.00	21	0	21	0	y	0.88	22	3	22	3	y	0.91	10	1	10	1	y	0.84	16	3	16	3	y	0.86	30	5	30	5	y	1.00	8	0	8	0	y	0.87	26	4	26	4	y	0.94	16	1	16	1	y	0.88	23	3	23	3	y	0.98	42	1	42	1	y	0.95	35	2	35	2	y	0.96	24	1	24	1	y	ENSMUSG00000085826.2	Gm15638	chr16	lncRNA	predicted gene 15638
novel_NIR_7787	chr16	4588599	4607409	-	4588599	4608016	A5SS	ENSMUST00000118703.8	novel	0.02	1	61	1	61	n	0.00	0	37	0	37	n	0.07	3	41	3	41	n	0.00	0	41	0	41	n	0.15	10	57	10	57	y	0.08	3	36	3	36	n	0.05	3	59	3	59	n	0.00	0	35	0	35	n	0.10	2	19	2	19	n	0.00	0	37	0	37	n	0.04	1	25	1	25	n	0.00	0	35	0	35	n	ENSMUSG00000004071.14	Cdip1	chr16	protein_coding	cell death inducing Trp53 target 1
novel_NIR_7788	chr16	4588599	4647130	-	4588599	4607695	5pMXE	ENSMUST00000004173.12	novel	0.08	7	76	7	76	n	0.02	1	65	1	65	n	0.12	16	116	16	116	n	0.03	3	84	3	84	n	0.09	11	107	11	107	n	0.17	13	64	13	64	y	0.06	5	76	5	76	n	0.09	7	68	7	68	n	0.15	8	44	8	44	y	0.00	0	70	0	70	n	0.00	0	52	0	52	n	0.08	7	84	7	84	n	ENSMUSG00000004071.14	Cdip1	chr16	protein_coding	cell death inducing Trp53 target 1
novel_NIR_7789	chr16	4588599	4647130	-	4588599	4608016	5pMXE	ENSMUST00000118703.8	novel	0.10	7	61	7	61	n	0.03	1	37	1	37	n	0.28	16	41	16	41	y	0.07	3	41	3	41	n	0.16	11	57	11	57	y	0.27	13	36	13	36	y	0.08	5	59	5	59	n	0.17	7	35	7	35	y	0.30	8	19	8	19	y	0.00	0	37	0	37	n	0.00	0	25	0	25	n	0.17	7	35	7	35	y	ENSMUSG00000004071.14	Cdip1	chr16	protein_coding	cell death inducing Trp53 target 1
novel_NIR_7790	chr16	46284522	46284697	-	46284522	46318754	A5SS	ENSMUST00000133935.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000022656.16	Nectin3	chr16	protein_coding	nectin cell adhesion molecule 3
novel_NIR_7791	chr16	4745765	4747428	+	4745765	4747951	A3SS	ENSMUST00000230108.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	ENSMUSG00000022517.18	Mgrn1	chr16	protein_coding	mahogunin, ring finger 1
novel_NIR_7792	chr16	4748167	4748555	+	4748167	4748977	A3SS	ENSMUST00000230108.2	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	7	0	7	0	y	ENSMUSG00000022517.18	Mgrn1	chr16	protein_coding	mahogunin, ring finger 1
novel_NIR_7793	chr16	4759846	4760075	-	4759661	4760075	A3SS	ENSMUST00000229898.2	novel	0.57	4	3	4	3	y	0.50	4	4	4	4	y	0.42	5	7	5	7	y	1.00	2	0	2	0	y	0.38	3	5	3	5	y	0.00	0	3	0	3	n	0.60	6	4	6	4	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.55	6	5	6	5	y	0.00	0	6	0	6	n	0.50	5	5	5	5	y	ENSMUSG00000022515.7	Anks3	chr16	protein_coding	ankyrin repeat and sterile alpha motif domain containing 3
novel_NIR_7794	chr16	4759846	4760075	-	4759851	4760075	A3SS	ENSMUST00000231036.2	novel	0.11	4	31	4	31	n	0.12	4	30	4	30	n	0.17	5	25	5	25	y	0.07	2	28	2	28	n	0.11	3	25	3	25	n	0.00	0	14	0	14	n	0.11	6	47	6	47	n	0.00	0	21	0	21	n	0.00	0	8	0	8	n	0.16	6	31	6	31	y	0.00	0	33	0	33	n	0.19	5	21	5	21	y	ENSMUSG00000022515.7	Anks3	chr16	protein_coding	ankyrin repeat and sterile alpha motif domain containing 3
novel_NIR_7795	chr16	4764019	4765129	-	4764187	4765129	A3SS	ENSMUST00000229272.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000022515.7	Anks3	chr16	protein_coding	ankyrin repeat and sterile alpha motif domain containing 3
novel_NIR_7796	chr16	4764070	4765129	-	4764187	4765129	A3SS	ENSMUST00000229272.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000022515.7	Anks3	chr16	protein_coding	ankyrin repeat and sterile alpha motif domain containing 3
novel_NIR_7797	chr16	4768632	4781984	-	4778432	4781984	3pMXE	ENSMUST00000229077.2	novel	0.00	0	18	0	18	n	0.00	0	10	0	10	n	0.00	0	21	0	21	n	0.12	2	15	2	15	n	0.00	0	24	0	24	n	0.00	0	3	0	3	n	0.20	2	8	2	8	y	0.00	0	17	0	17	n	0.00	0	11	0	11	n	0.00	0	21	0	21	n	0.00	0	13	0	13	n	0.00	0	18	0	18	n	ENSMUSG00000022515.7	Anks3	chr16	protein_coding	ankyrin repeat and sterile alpha motif domain containing 3
novel_NIR_7798	chr16	4825189	4825836	+	4825282	4825836	5pMXE	ENSMUST00000183381.8	novel	0.67	2	1	2	1	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000096215.9	Smim22	chr16	protein_coding	small integral membrane protein 22
novel_NIR_7799	chr16	4868604	4872941	+	4868645	4872941	A5SS	ENSMUST00000230703.2	novel	0.00	0	7	0	7	n	0.33	2	4	2	4	y	0.06	1	16	1	16	n	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.20	2	8	2	8	y	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	ENSMUSG00000039473.9	Ubn1	chr16	protein_coding	ubinuclein 1
novel_NIR_7800	chr16	4868604	4872941	+	4871705	4872941	A5SS&ES	ENSMUST00000052449.6	novel	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000039473.9	Ubn1	chr16	protein_coding	ubinuclein 1
novel_NIR_7801	chr16	48778094	48778782	-	48778068	48778782	A3SS	ENSMUST00000121869.8	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000064061.14	Dzip3	chr16	protein_coding	DAZ interacting protein 3, zinc finger
novel_NIR_7802	chr16	4895979	4899286	+	4895979	4901920	A3SS	ENSMUST00000229386.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000039473.9	Ubn1	chr16	protein_coding	ubinuclein 1
novel_NIR_7803	chr16	4909801	4910222	-	4909801	4910229	A5SS	ENSMUST00000035672.5	novel	0.00	0	16	0	16	n	0.08	3	33	3	33	n	0.00	0	9	0	9	n	0.18	4	18	4	18	y	0.00	0	17	0	17	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.12	2	15	2	15	n	0.00	0	6	0	6	n	0.03	1	29	1	29	n	ENSMUSG00000039457.5	Ppl	chr16	protein_coding	periplakin
novel_NIR_7804	chr16	4918519	4919238	-	4918292	4919238	A3SS	ENSMUST00000035672.5	novel	0.00	0	12	0	12	n	0.20	2	8	2	8	y	0.00	0	3	0	3	n	0.07	1	13	1	13	n	0.00	0	25	0	25	n	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.00	0	23	0	23	n	ENSMUSG00000039457.5	Ppl	chr16	protein_coding	periplakin
novel_NIR_7805	chr16	49704617	49706937	+	49704617	49715732	A3SS	ENSMUST00000230836.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000055447.20	Cd47	chr16	protein_coding	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)
novel_NIR_7806	chr16	49715389	49715732	+	49704617	49715732	A5SS	ENSMUST00000230836.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000055447.20	Cd47	chr16	protein_coding	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)
novel_NIR_7807	chr16	49715393	49715732	+	49704617	49715732	A5SS	ENSMUST00000230836.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000055447.20	Cd47	chr16	protein_coding	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)
novel_NIR_7808	chr16	49728441	49731237	+	49728441	49729066	A3SS&ES	ENSMUST00000229206.2	novel	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.25	2	6	2	6	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	4	2	4	2	y	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000055447.20	Cd47	chr16	protein_coding	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)
novel_NIR_7809	chr16	49728441	49731237	+	49728445	49731237	A5SS	ENSMUST00000230281.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000055447.20	Cd47	chr16	protein_coding	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)
novel_NIR_7810	chr16	49729098	49731237	+	49728445	49731237	A5SS	ENSMUST00000230281.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000055447.20	Cd47	chr16	protein_coding	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)
novel_NIR_7811	chr16	49729098	49731237	+	49729098	49731232	A3SS	ENSMUST00000229206.2	novel	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	ENSMUSG00000055447.20	Cd47	chr16	protein_coding	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)
novel_NIR_7812	chr16	50020954	50022750	-	50020954	50022741	A5SS	ENSMUST00000138166.8	novel	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.08	1	11	1	11	n	0.00	0	3	0	3	n	0.23	3	10	3	10	y	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.22	2	7	2	7	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	ENSMUSG00000022641.16	Bbx	chr16	protein_coding	bobby sox HMG box containing
novel_NIR_7813	chr16	50095038	50100732	-	50086732	50100732	A3SS	ENSMUST00000066037.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022641.16	Bbx	chr16	protein_coding	bobby sox HMG box containing
novel_NIR_7814	chr16	50095038	50100732	-	50095152	50100732	A3SS	ENSMUST00000138166.8	novel	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.67	2	1	2	1	y	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000022641.16	Bbx	chr16	protein_coding	bobby sox HMG box containing
novel_NIR_7815	chr16	5014341	5015419	-	5013835	5015419	A3SS	ENSMUST00000156450.2	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	ENSMUSG00000023143.11	Nagpa	chr16	protein_coding	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase
novel_NIR_7816	chr16	5054342	5056509	+	5053130	5056509	A5SS	ENSMUST00000147530.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000039427.15	Alg1	chr16	protein_coding	asparagine-linked glycosylation 1 (beta-1,4-mannosyltransferase)
novel_NIR_7817	chr16	51932610	51948255	+	51932610	51951428	A3SS	ENSMUST00000114471.3	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.20	2	8	2	8	y	0.08	1	12	1	12	n	0.00	0	5	0	5	n	0.14	1	6	1	6	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000022637.12	Cblb	chr16	protein_coding	Casitas B-lineage lymphoma b
novel_NIR_7818	chr16	52097263	52098925	-	52097263	52115387	A5SS	ENSMUST00000167115.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000022636.14	Alcam	chr16	protein_coding	activated leukocyte cell adhesion molecule
novel_NIR_7819	chr16	55711212	55715651	-	55711212	55715291	5pMXE	ENSMUST00000099705.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000075033.5	Nxpe3	chr16	protein_coding	neurexophilin and PC-esterase domain family, member 3
novel_NIR_7820	chr16	55844749	55844825	-	55844749	55849966	A5SS	ENSMUST00000125040.8	novel	0.14	1	6	1	6	n	0.00	0	13	0	13	n	0.00	0	23	0	23	n	0.12	2	15	2	15	n	0.03	1	34	1	34	n	0.00	0	11	0	11	n	0.00	0	21	0	21	n	0.00	0	15	0	15	n	0.00	0	8	0	8	n	0.07	2	26	2	26	n	0.29	6	15	6	15	y	0.09	2	20	2	20	n	ENSMUSG00000071533.12	Pcnp	chr16	protein_coding	PEST proteolytic signal containing nuclear protein
novel_NIR_7821	chr16	55844801	55846632	-	55844801	55844897	5pMXE	ENSMUST00000096021.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000071533.12	Pcnp	chr16	protein_coding	PEST proteolytic signal containing nuclear protein
novel_NIR_7822	chr16	55907851	55909747	+	55902771	55909747	A5SS	ENSMUST00000049128.11	novel	0.00	0	5	0	5	n	0.00	0	4	0	4	n	1.00	4	0	4	0	y	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.43	3	4	3	4	y	0.33	3	6	3	6	y	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	ENSMUSG00000052917.16	Senp7	chr16	protein_coding	SUMO1/sentrin specific peptidase 7
novel_NIR_7823	chr16	55907851	55909747	+	55907880	55909747	A5SS	ENSMUST00000201915.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.80	4	1	4	1	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000052917.16	Senp7	chr16	protein_coding	SUMO1/sentrin specific peptidase 7
novel_NIR_7824	chr16	56004553	56006422	+	56004553;56005192	56005124;56006422	ES	ENSMUST00000089360.10	novel	0.00	0	3.0	0	4;2	n	0.19	2	8.5	2	11;6	y	0.00	0	11.0	0	12;10	n	0.00	0	6.5	0	6;7	n	0.17	2	9.5	2	7;12	y	0.00	0	3.5	0	3;4	n	0.00	0	4.0	0	3;5	n	0.00	0	2.0	0	0;4	n	0.00	0	3.5	0	2;5	n	0.09	1	10.5	1	10;11	n	0.00	0	6.0	0	6;6	n	0.09	1	10.5	1	8;13	n	ENSMUSG00000052917.16	Senp7	chr16	protein_coding	SUMO1/sentrin specific peptidase 7
novel_NIR_7825	chr16	56004553	56006422	+	56005192	56006422	A5SS&ES	ENSMUST00000202108.4	novel	0.00	0	2	0	2	n	0.25	2	6	2	6	y	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.14	2	12	2	12	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.08	1	11	1	11	n	0.00	0	6	0	6	n	0.07	1	13	1	13	n	ENSMUSG00000052917.16	Senp7	chr16	protein_coding	SUMO1/sentrin specific peptidase 7
novel_NIR_7826	chr16	56511512	56514763	-	56512279	56514763	A3SS&ES	ENSMUST00000127994.8	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000022757.20	Tfg	chr16	protein_coding	Trk-fused gene
novel_NIR_7827	chr16	56514852	56517834	-	56514852	56517822	A5SS	ENSMUST00000065515.14	novel	0.18	25	117	25	117	y	0.18	21	95	21	95	y	0.21	52	198	52	198	y	0.33	56	114	56	114	y	0.22	52	187	52	187	y	0.17	29	141	29	141	y	0.24	37	115	37	115	y	0.23	28	93	28	93	y	0.23	27	89	27	89	y	0.19	35	145	35	145	y	0.27	44	119	44	119	y	0.29	48	118	48	118	y	ENSMUSG00000022757.20	Tfg	chr16	protein_coding	Trk-fused gene
novel_NIR_7828	chr16	56977895	56979781	-	56977995	56979781	A3SS	ENSMUST00000231423.2	novel	0.22	5	18	5	18	y	0.18	6	28	6	28	y	0.44	4	5	4	5	y	0.12	3	23	3	23	n	0.22	6	21	6	21	y	0.50	2	2	2	2	y	0.42	8	11	8	11	y	0.25	1	3	1	3	n	0.15	4	22	4	22	y	0.06	2	30	2	30	n	0.22	4	14	4	14	y	0.29	5	12	5	12	y	ENSMUSG00000022751.10	Nit2	chr16	protein_coding	nitrilase family, member 2
novel_NIR_7829	chr16	57232246	57427029	-	57143906	57427029	A3SS	ENSMUST00000114371.5	novel	0.00	0	15	0	15	n	0.17	1	5	1	5	n	0.00	0	15	0	15	n	0.00	0	14	0	14	n	0.07	1	13	1	13	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.33	3	6	3	6	y	0.00	0	8	0	8	n	ENSMUSG00000022748.9	Cmss1	chr16	protein_coding	cms small ribosomal subunit 1
novel_NIR_7830	chr16	57232246	57427029	-	57265354	57427029	3pMXE	ENSMUST00000231282.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000022748.9	Cmss1	chr16	protein_coding	cms small ribosomal subunit 1
novel_NIR_7831	chr16	57232246	57427029	-	57382125	57427029	3pMXE	ENSMUST00000232413.2	novel	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.30	3	7	3	7	y	0.00	0	2	0	2	n	ENSMUSG00000022748.9	Cmss1	chr16	protein_coding	cms small ribosomal subunit 1
novel_NIR_7832	chr16	58293909	58294028	-	58293909	58294017	A5SS	ENSMUST00000137035.8	novel	-	-	-	-	-	-	0.00	0	11	0	11	n	0.40	2	3	2	3	y	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	ENSMUSG00000022747.18	St3gal6	chr16	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 6
novel_NIR_7833	chr16	58296308	58299432	-	58296308	58305126	A5SS	ENSMUST00000137035.8	novel	0.12	1	7	1	7	n	0.25	1	3	1	3	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000022747.18	St3gal6	chr16	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 6
novel_NIR_7834	chr16	58296308	58303444	-	58296308	58305126	A5SS	ENSMUST00000137035.8	novel	0.00	0	7	0	7	n	0.40	2	3	2	3	y	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000022747.18	St3gal6	chr16	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 6
novel_NIR_7835	chr16	58548447	58549806	+	58548447	58549521	A3SS&ES	ENSMUST00000162191.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	5	0	5	0	y	ENSMUSG00000022744.13	Cldnd1	chr16	protein_coding	claudin domain containing 1
novel_NIR_7836	chr16	58548447	58549806	+	58548447	58549536	A3SS&ES	ENSMUST00000162057.8	novel	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.33	1	2	1	2	n	1.00	5	0	5	0	y	ENSMUSG00000022744.13	Cldnd1	chr16	protein_coding	claudin domain containing 1
novel_NIR_7837	chr16	58548447	58549806	+	58548447	58549543	A3SS&ES	ENSMUST00000159829.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	5	0	5	0	y	ENSMUSG00000022744.13	Cldnd1	chr16	protein_coding	claudin domain containing 1
novel_NIR_7838	chr16	58548447	58549901	+	58548447	58549521	A3SS&ES	ENSMUST00000162191.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022744.13	Cldnd1	chr16	protein_coding	claudin domain containing 1
novel_NIR_7839	chr16	58548447	58549901	+	58548447	58549536	A3SS&ES	ENSMUST00000162057.8	novel	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000022744.13	Cldnd1	chr16	protein_coding	claudin domain containing 1
novel_NIR_7840	chr16	58548447	58549901	+	58548447	58549543	A3SS&ES	ENSMUST00000159829.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022744.13	Cldnd1	chr16	protein_coding	claudin domain containing 1
novel_NIR_7841	chr16	59307962	59311568	+	59307962	59309853	3pMXE	ENSMUST00000131272.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000022724.16	Riox2	chr16	protein_coding	ribosomal oxygenase 2
novel_NIR_7842	chr16	59307962	59311568	+	59307962;59309929	59309853;59311568	ES	ENSMUST00000120674.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1.0	1	0;2	n	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	0.86	3	0.5	3	0;1	y	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	0.00	0	1.0	0	0;2	n	0.00	0	1.0	0	2;0	n	0.00	0	1.0	0	1;1	n	ENSMUSG00000022724.16	Riox2	chr16	protein_coding	ribosomal oxygenase 2
novel_NIR_7843	chr16	59310539	59311568	+	59309929	59311568	A5SS	ENSMUST00000120674.8	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000022724.16	Riox2	chr16	protein_coding	ribosomal oxygenase 2
novel_NIR_7844	chr16	62740384	62744879	+	62741887	62744879	5pMXE	ENSMUST00000127502.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022912.9	Pros1	chr16	protein_coding	protein S (alpha)
novel_NIR_7845	chr16	64587353	64589287	-	64587356	64589287	A3SS	ENSMUST00000076991.7	novel	0.03	3	89	3	89	n	0.14	12	72	12	72	n	0.12	15	111	15	111	n	0.13	10	67	10	67	n	0.11	15	121	15	121	n	0.03	2	65	2	65	n	0.12	15	109	15	109	n	0.19	12	52	12	52	y	0.11	8	63	8	63	n	0.08	7	80	7	80	n	0.03	2	71	2	71	n	0.06	7	104	7	104	n	ENSMUSG00000059920.10	4930453N24Rik	chr16	protein_coding	RIKEN cDNA 4930453N24 gene
novel_NIR_7846	chr16	64607165	64611450	-	64607165;64608809	64608668;64611450	ES	ENSMUST00000207826.2	novel	0.09	1	10.5	1	13;8	n	0.00	0	6.0	0	6;6	n	0.10	2	19.0	2	12;26	n	0.00	0	8.0	0	9;7	n	0.09	2	21.5	2	20;23	n	0.00	0	5.5	0	8;3	n	0.30	5	11.5	5	8;15	y	0.00	0	9.5	0	10;9	n	0.00	0	4.5	0	1;8	n	0.17	2	9.5	2	8;11	y	0.12	1	7.5	1	7;8	n	0.07	1	13.5	1	17;10	n	ENSMUSG00000047141.6	Zfp654	chr16	protein_coding	zinc finger protein 654
novel_NIR_7847	chr16	64612282	64614784	-	64612334	64614784	A3SS	ENSMUST00000207826.2	novel	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.03	1	31	1	31	n	0.00	0	11	0	11	n	0.00	0	17	0	17	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.33	2	4	2	4	y	0.00	0	10	0	10	n	ENSMUSG00000047141.6	Zfp654	chr16	protein_coding	zinc finger protein 654
novel_NIR_7848	chr16	64673388	64675917	+	64673388	64675914	A3SS	ENSMUST00000067744.8	novel	0.15	12	68	12	68	y	0.15	12	67	12	67	y	0.16	30	152	30	152	y	0.12	10	71	10	71	n	0.12	19	135	19	135	n	0.11	8	68	8	68	n	0.20	25	99	25	99	y	0.25	18	55	18	55	y	0.26	20	56	20	56	y	0.21	23	88	23	88	y	0.20	17	66	17	66	y	0.30	36	85	36	85	y	ENSMUSG00000054604.8	Cggbp1	chr16	protein_coding	CGG triplet repeat binding protein 1
novel_NIR_7849	chr16	70198737	70357929	+	70198737	70230433	A3SS&ES	ENSMUST00000023393.15	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.12	1	7	1	7	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	9	0	9	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000022707.17	Gbe1	chr16	protein_coding	glucan (1,4-alpha-), branching enzyme 1
novel_NIR_7850	chr16	7193833;7209904	7209852;7225828	+	7193833	7225828	cassetteExon	ENSMUST00000056416.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.63	12.0	7	16;8	7	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000008658.17	Rbfox1	chr16	protein_coding	RNA binding protein, fox-1 homolog (C. elegans) 1
novel_NIR_7851	chr16	72753171	72756969	+	72732674	72756969	A5SS	ENSMUST00000232205.2	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.71	5	2	5	2	y	ENSMUSG00000022883.12	Robo1	chr16	protein_coding	roundabout guidance receptor 1
novel_NIR_7852	chr16	72786684	72792005	+	72786684;72790581	72790555;72792005	ES	ENSMUST00000232205.2	novel	0.00	0	2.5	0	3;2	n	0.00	0	1.5	0	2;1	n	0.62	4	2.5	4	3;2	y	0.00	0	2.0	0	3;1	n	0.00	0	3.5	0	4;3	n	0.22	1	3.5	1	3;4	n	0.00	0	1.5	0	1;2	n	0.00	0	2.5	0	3;2	n	0.33	1	2.0	1	1;3	n	0.00	0	5.5	0	6;5	n	0.00	0	1.5	0	2;1	n	0.20	1	4.0	1	4;4	n	ENSMUSG00000022883.12	Robo1	chr16	protein_coding	roundabout guidance receptor 1
novel_NIR_7853	chr16	72798961	72801463	+	72798961	72801298	A3SS	ENSMUST00000232205.2	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.14	1	6	1	6	n	1.00	3	0	3	0	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.08	1	11	1	11	n	ENSMUSG00000022883.12	Robo1	chr16	protein_coding	roundabout guidance receptor 1
novel_NIR_7854	chr16	75555242	75556303	-	75555615	75556303	A3SS&ES	ENSMUST00000232633.2	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.23	7	23	7	23	y	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032932.16	Hspa13	chr16	protein_coding	heat shock protein 70 family, member 13
novel_NIR_7855	chr16	77157606	77195370	+	77157606	77233243	A3SS	ENSMUST00000182601.8	novel	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.29	2	5	2	5	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000090386.11	Mir99ahg	chr16	lncRNA	Mir99a and Mirlet7c-1 host gene (non-protein coding)
novel_NIR_7856	chr16	77157606	77195370	+	77157606	77256262	A3SS	ENSMUST00000182656.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000090386.11	Mir99ahg	chr16	lncRNA	Mir99a and Mirlet7c-1 host gene (non-protein coding)
novel_NIR_7857	chr16	77157606	77195370	+	77157606	77298391	A3SS	ENSMUST00000182398.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000090386.11	Mir99ahg	chr16	lncRNA	Mir99a and Mirlet7c-1 host gene (non-protein coding)
novel_NIR_7858	chr16	77218740	77233243	+	77157606	77233243	A5SS	ENSMUST00000182601.8	novel	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000090386.11	Mir99ahg	chr16	lncRNA	Mir99a and Mirlet7c-1 host gene (non-protein coding)
novel_NIR_7859	chr16	77297533	77297799	+	77297533	77298391	A3SS	ENSMUST00000068704.12	novel	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.29	2	5	2	5	y	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	ENSMUSG00000090386.11	Mir99ahg	chr16	lncRNA	Mir99a and Mirlet7c-1 host gene (non-protein coding)
novel_NIR_7860	chr16	78052342	78062011	-	78052342	78071849	A5SS	ENSMUST00000210839.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000109841.3	E330011O21Rik	chr16	lncRNA	RIKEN cDNA E330011O21 gene
novel_NIR_7861	chr16	78052342	78062011	-	78052342	78091773	A5SS	ENSMUST00000231981.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000109841.3	E330011O21Rik	chr16	lncRNA	RIKEN cDNA E330011O21 gene
novel_NIR_7862	chr16	78052342	78062011	-	78052342	78099072	A5SS	ENSMUST00000209468.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000109841.3	E330011O21Rik	chr16	lncRNA	RIKEN cDNA E330011O21 gene
novel_NIR_7863	chr16	78052342;78062108	78062011;78062753	-	78052342	78062753	cassetteExon	ENSMUST00000211605.2	novel	0.00	0.0	9	0;0	9	n	-	-	-	-	-	-	0.14	0.5	3	0;1	3	n	0.18	1.5	7	2;1	7	n	0.11	0.5	4	1;0	4	n	0.00	0.0	2	0;0	2	n	0.45	2.5	3	2;3	3	y	0.00	0.0	4	0;0	4	n	0.07	0.5	7	1;0	7	n	0.03	0.5	19	1;0	19	n	0.00	0.0	3	0;0	3	n	0.00	0.0	4	0;0	4	n	ENSMUSG00000109841.3	E330011O21Rik	chr16	lncRNA	RIKEN cDNA E330011O21 gene
novel_NIR_7864	chr16	78170311	78174172	-	78170311	78173489	5pMXE	ENSMUST00000023570.14	novel	0.27	4	11	4	11	y	0.00	0	9	0	9	n	0.04	14	315	14	315	n	0.00	0	5	0	5	n	0.00	0	30	0	30	n	0.05	3	61	3	61	n	0.00	0	18	0	18	n	0.00	0	23	0	23	n	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	ENSMUSG00000022863.16	Btg3	chr16	protein_coding	BTG anti-proliferation factor 3
novel_NIR_7865	chr16	78170311	78174172	-	78170311	78174056	5pMXE	ENSMUST00000148124.2	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	0.67	14	7	14	7	y	-	-	-	-	-	-	0.00	0	4	0	4	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022863.16	Btg3	chr16	protein_coding	BTG anti-proliferation factor 3
novel_NIR_7866	chr16	81262592	81268202	+	81262592	81280189	A3SS	ENSMUST00000231687.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022762.19	Ncam2	chr16	protein_coding	neural cell adhesion molecule 2
novel_NIR_7867	chr16	81262592	81268202	+	81262592	81287132	A3SS	ENSMUST00000037785.14	novel	0.00	0	2	0	2	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.25	2	6	2	6	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000022762.19	Ncam2	chr16	protein_coding	neural cell adhesion molecule 2
novel_NIR_7868	chr16	81262592	81270020	+	81262592	81280189	A3SS	ENSMUST00000231687.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000022762.19	Ncam2	chr16	protein_coding	neural cell adhesion molecule 2
novel_NIR_7869	chr16	81262592	81270020	+	81262592	81287132	A3SS	ENSMUST00000037785.14	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.14	1	6	1	6	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.29	2	5	2	5	y	ENSMUSG00000022762.19	Ncam2	chr16	protein_coding	neural cell adhesion molecule 2
novel_NIR_7870	chr16	8296193	8300120	+	8288729	8300120	A5SS	ENSMUST00000150790.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	ENSMUSG00000039345.17	Mettl22	chr16	protein_coding	methyltransferase like 22
novel_NIR_7871	chr16	84516808	84517158	-	84515272	84517158	A3SS	ENSMUST00000116584.2	novel	0.22	26	93	26	93	y	0.06	7	113	7	113	n	0.24	17	55	17	55	y	0.19	19	83	19	83	y	0.14	15	95	15	95	n	0.23	7	24	7	24	y	0.12	11	84	11	84	n	0.23	9	31	9	31	y	0.12	10	70	10	70	n	0.20	28	115	28	115	y	0.21	20	74	20	74	y	0.18	23	104	23	104	y	ENSMUSG00000022889.8	Mrpl39	chr16	protein_coding	mitochondrial ribosomal protein L39
novel_NIR_7872	chr16	84628334	84630708	-	84628395	84630708	A3SS	ENSMUST00000114191.8	novel	0.00	0	98	0	98	n	0.00	0	122	0	122	n	0.00	0	61	0	61	n	0.00	0	116	0	116	n	0.00	0	116	0	116	n	0.00	0	50	0	50	n	0.00	0	144	0	144	n	0.00	0	41	0	41	n	0.00	0	115	0	115	n	0.27	59	160	59	160	y	0.00	0	125	0	125	n	0.00	0	139	0	139	n	ENSMUSG00000022890.14	Atp5j	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
novel_NIR_7873	chr16	84628334	84631697	-	84630762	84631697	A3SS&ES	ENSMUST00000114191.8	novel	0.01	1	79	1	79	n	0.44	47	60	47	60	y	0.00	0	47	0	47	n	0.00	0	61	0	61	n	0.00	0	77	0	77	n	0.00	0	36	0	36	n	0.00	0	74	0	74	n	0.00	0	30	0	30	n	0.00	0	60	0	60	n	0.00	0	91	0	91	n	0.00	0	77	0	77	n	0.00	0	73	0	73	n	ENSMUSG00000022890.14	Atp5j	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
novel_NIR_7874	chr16	84628334	84631780	-	84628395	84631780	A3SS	ENSMUST00000140036.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.89	17	2	17	2	y	ENSMUSG00000022890.14	Atp5j	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
novel_NIR_7875	chr16	84628390	84630708	-	84628395	84630708	A3SS	ENSMUST00000114191.8	novel	0.42	71	98	71	98	y	0.00	0	122	0	122	n	0.00	0	61	0	61	n	0.04	5	116	5	116	n	0.46	100	116	100	116	y	0.31	22	50	22	50	y	0.12	19	144	19	144	n	0.41	28	41	28	41	y	0.21	31	115	31	115	y	0.00	0	160	0	160	n	0.07	9	125	9	125	n	0.09	14	139	14	139	n	ENSMUSG00000022890.14	Atp5j	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
novel_NIR_7876	chr16	84628390	84631697	-	84630762	84631697	A3SS&ES	ENSMUST00000114191.8	novel	0.00	0	79	0	79	n	0.64	105	60	105	60	y	0.00	0	47	0	47	n	0.40	40	61	40	61	y	0.00	0	77	0	77	n	0.37	21	36	21	36	y	0.48	69	74	69	74	y	0.00	0	30	0	30	n	0.00	0	60	0	60	n	0.37	53	91	53	91	y	0.00	0	77	0	77	n	0.48	68	73	68	73	y	ENSMUSG00000022890.14	Atp5j	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
novel_NIR_7877	chr16	84628390	84631830	-	84628395	84631830	A3SS	ENSMUST00000155956.2	novel	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.33	4	8	4	8	y	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.10	1	9	1	9	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.25	1	3	1	3	n	0.00	0	7	0	7	n	ENSMUSG00000022890.14	Atp5j	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
novel_NIR_7878	chr16	84628395	84628562	-	84628395	84630882	A5SS	ENSMUST00000114193.8	novel	0.00	0	7	0	7	n	0.00	0	14	0	14	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.15	2	11	2	11	y	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	ENSMUSG00000022890.14	Atp5j	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
novel_NIR_7879	chr16	84628395	84628562	-	84628395	84631780	A5SS	ENSMUST00000140036.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000022890.14	Atp5j	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
novel_NIR_7880	chr16	84628395	84628562	-	84628395	84631830	A5SS	ENSMUST00000155956.2	novel	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.18	2	9	2	9	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	ENSMUSG00000022890.14	Atp5j	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
novel_NIR_7881	chr16	84628395	84628562	-	84628395	84632309	A5SS	ENSMUST00000138279.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022890.14	Atp5j	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
novel_NIR_7882	chr16	84628395	84631401	-	84628395	84630882	5pMXE	ENSMUST00000114193.8	novel	0.12	1	7	1	7	n	0.07	1	14	1	14	n	-	-	-	-	-	-	0.18	2	9	2	9	y	0.10	1	9	1	9	n	-	-	-	-	-	-	0.08	1	11	1	11	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	ENSMUSG00000022890.14	Atp5j	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
novel_NIR_7883	chr16	84628395	84631401	-	84628395	84631780	A5SS	ENSMUST00000140036.2	novel	0.33	1	2	1	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	2	2	2	2	y	1.00	1	0	1	0	n	0.00	0	4	0	4	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000022890.14	Atp5j	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
novel_NIR_7884	chr16	84628395	84631401	-	84628395	84631830	A5SS	ENSMUST00000155956.2	novel	0.17	1	5	1	5	n	0.25	1	3	1	3	n	0.00	0	8	0	8	n	0.67	2	1	2	1	y	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.10	1	9	1	9	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	ENSMUSG00000022890.14	Atp5j	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
novel_NIR_7885	chr16	84628395	84631526	-	84628395	84630882	5pMXE	ENSMUST00000114193.8	novel	0.42	5	7	5	7	y	0.00	0	14	0	14	n	1.00	3	0	3	0	y	0.18	2	9	2	9	y	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	11	0	11	n	1.00	1	0	1	0	n	0.00	0	7	0	7	n	0.22	4	14	4	14	y	0.14	2	12	2	12	n	0.00	0	8	0	8	n	ENSMUSG00000022890.14	Atp5j	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
novel_NIR_7886	chr16	84628395	84631526	-	84628395	84631780	A5SS	ENSMUST00000140036.2	novel	0.71	5	2	5	2	y	-	-	-	-	-	-	1.00	3	0	3	0	y	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.80	4	1	4	1	y	0.33	2	4	2	4	y	0.00	0	2	0	2	n	ENSMUSG00000022890.14	Atp5j	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
novel_NIR_7887	chr16	84628395	84631526	-	84628395	84631830	A5SS	ENSMUST00000155956.2	novel	0.50	5	5	5	5	y	0.00	0	3	0	3	n	0.27	3	8	3	8	y	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.20	1	4	1	4	n	0.00	0	6	0	6	n	0.29	4	10	4	10	y	0.40	2	3	2	3	y	0.00	0	7	0	7	n	ENSMUSG00000022890.14	Atp5j	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
novel_NIR_7888	chr16	84628395	84631526	-	84628395	84632309	A5SS	ENSMUST00000138279.2	novel	1.00	5	0	5	0	n	-	-	-	-	-	-	1.00	3	0	3	0	n	1.00	2	0	2	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000022890.14	Atp5j	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
novel_NIR_7889	chr16	84628395	84631545	-	84628395	84630882	5pMXE	ENSMUST00000114193.8	novel	0.22	2	7	2	7	y	0.12	2	14	2	14	n	-	-	-	-	-	-	0.10	1	9	1	9	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	11	0	11	n	-	-	-	-	-	-	0.22	2	7	2	7	y	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.11	1	8	1	8	n	ENSMUSG00000022890.14	Atp5j	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
novel_NIR_7890	chr16	84628395	84631545	-	84628395	84631780	A5SS	ENSMUST00000140036.2	novel	0.50	2	2	2	2	y	1.00	2	0	2	0	y	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.33	1	2	1	2	n	ENSMUSG00000022890.14	Atp5j	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
novel_NIR_7891	chr16	84628395	84631545	-	84628395	84631830	A5SS	ENSMUST00000155956.2	novel	0.29	2	5	2	5	y	0.40	2	3	2	3	y	0.00	0	8	0	8	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.25	2	6	2	6	y	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.12	1	7	1	7	n	ENSMUSG00000022890.14	Atp5j	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
novel_NIR_7892	chr16	84628395	84631685	-	84628395	84630882	5pMXE	ENSMUST00000114193.8	novel	0.12	1	7	1	7	n	0.00	0	14	0	14	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	9	0	9	n	1.00	2	0	2	0	y	0.00	0	11	0	11	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.08	1	12	1	12	n	0.00	0	8	0	8	n	ENSMUSG00000022890.14	Atp5j	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
novel_NIR_7893	chr16	84628395	84631685	-	84628395	84631780	A5SS	ENSMUST00000140036.2	novel	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.33	2	4	2	4	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	ENSMUSG00000022890.14	Atp5j	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
novel_NIR_7894	chr16	84628395	84631685	-	84628395	84631830	A5SS	ENSMUST00000155956.2	novel	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.25	1	3	1	3	n	0.00	0	7	0	7	n	ENSMUSG00000022890.14	Atp5j	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
novel_NIR_7895	chr16	84628395;84631855	84631526;84632309	-	84628395	84632309	cassetteExon	ENSMUST00000138279.2	novel	1.00	2.5	0	5;0	0	n	-	-	-	-	-	-	1.00	1.5	0	3;0	0	n	1.00	1.0	0	2;0	0	n	1.00	2.5	0	0;5	0	n	-	-	-	-	-	-	1.00	3.0	0	0;6	0	n	1.00	0.5	0	1;0	0	n	-	-	-	-	-	-	1.00	5.5	0	4;7	0	y	1.00	1.0	0	2;0	0	n	-	-	-	-	-	-	ENSMUSG00000022890.14	Atp5j	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
novel_NIR_7896	chr16	84628395;84631869	84631401;84632309	-	84628395	84632309	cassetteExon	ENSMUST00000138279.2	novel	1.00	3.0	0	1;5	0	n	1.00	2.0	0	1;3	0	n	1.00	1.5	0	0;3	0	n	1.00	4.0	0	2;6	0	y	1.00	3.0	0	1;5	0	n	1.00	1.5	0	0;3	0	n	1.00	3.0	0	1;5	0	n	1.00	1.0	0	0;2	0	n	1.00	3.0	0	0;6	0	n	1.00	5.5	0	0;11	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022890.14	Atp5j	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
novel_NIR_7897	chr16	84628395;84631869	84631526;84632309	-	84628395	84632309	cassetteExon	ENSMUST00000138279.2	novel	1.00	5.0	0	5;5	0	y	1.00	1.5	0	0;3	0	n	1.00	3.0	0	3;3	0	y	1.00	4.0	0	2;6	0	y	1.00	2.5	0	0;5	0	n	1.00	1.5	0	0;3	0	n	1.00	2.5	0	0;5	0	n	1.00	1.5	0	1;2	0	n	1.00	3.0	0	0;6	0	n	1.00	7.5	0	4;11	0	y	1.00	1.0	0	2;0	0	n	-	-	-	-	-	-	ENSMUSG00000022890.14	Atp5j	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
novel_NIR_7898	chr16	84628395;84631869	84631545;84632309	-	84628395	84632309	cassetteExon	ENSMUST00000138279.2	novel	1.00	3.5	0	2;5	0	y	1.00	2.5	0	2;3	0	y	1.00	1.5	0	0;3	0	n	1.00	3.5	0	1;6	0	n	1.00	2.5	0	0;5	0	n	1.00	1.5	0	0;3	0	n	1.00	2.5	0	0;5	0	n	1.00	1.0	0	0;2	0	n	1.00	4.0	0	2;6	0	y	1.00	5.5	0	0;11	0	n	-	-	-	-	-	-	1.00	0.5	0	1;0	0	n	ENSMUSG00000022890.14	Atp5j	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
novel_NIR_7899	chr16	84628395;84631869	84631685;84632309	-	84628395	84632309	cassetteExon	ENSMUST00000138279.2	novel	1.00	3.0	0	1;5	0	n	1.00	1.5	0	0;3	0	n	1.00	1.5	0	0;3	0	n	1.00	3.0	0	0;6	0	n	1.00	2.5	0	0;5	0	n	1.00	2.5	0	2;3	0	y	1.00	2.5	0	0;5	0	n	1.00	1.0	0	0;2	0	n	1.00	3.0	0	0;6	0	n	1.00	5.5	0	0;11	0	n	1.00	0.5	0	1;0	0	n	-	-	-	-	-	-	ENSMUSG00000022890.14	Atp5j	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
novel_NIR_7900	chr16	84630762	84630882	-	84628395	84630882	A3SS	ENSMUST00000114193.8	novel	0.00	0	7	0	7	n	0.18	3	14	3	14	y	-	-	-	-	-	-	0.10	1	9	1	9	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.31	5	11	5	11	y	-	-	-	-	-	-	0.36	4	7	4	7	y	0.36	8	14	8	14	y	0.29	5	12	5	12	y	0.38	5	8	5	8	n	ENSMUSG00000022890.14	Atp5j	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
novel_NIR_7901	chr16	84633709	84635969	+	84631911	84635969	A5SS	ENSMUST00000114184.8	novel	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	20	0	20	n	0.04	1	22	1	22	n	0.08	1	12	1	12	n	0.00	0	3	0	3	n	0.21	3	11	3	11	y	0.14	1	6	1	6	n	0.00	0	10	0	10	n	0.04	1	22	1	22	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	ENSMUSG00000008976.17	Gabpa	chr16	protein_coding	GA repeat binding protein, alpha
novel_NIR_7902	chr16	84634333	84635969	+	84631911	84635969	A5SS	ENSMUST00000114184.8	novel	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	20	0	20	n	0.00	0	22	0	22	n	0.08	1	12	1	12	n	0.00	0	3	0	3	n	0.21	3	11	3	11	y	0.25	2	6	2	6	y	0.00	0	10	0	10	n	0.00	0	22	0	22	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	ENSMUSG00000008976.17	Gabpa	chr16	protein_coding	GA repeat binding protein, alpha
novel_NIR_7903	chr16	8473552	8480255	+	8473552	8479320	A3SS	ENSMUST00000230828.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022711.17	Pmm2	chr16	protein_coding	phosphomannomutase 2
novel_NIR_7904	chr16	8482286	8489381	-	8482286	8489977	A5SS	ENSMUST00000008537.10	novel	0.05	4	73	4	73	n	0.11	8	68	8	68	n	0.07	9	123	9	123	n	0.10	10	88	10	88	n	0.07	7	99	7	99	n	0.11	9	76	9	76	n	0.06	6	97	6	97	n	0.13	10	65	10	65	n	0.16	12	64	12	64	y	0.17	20	98	20	98	y	0.03	3	96	3	96	n	0.08	8	87	8	87	n	ENSMUSG00000008393.10	Carhsp1	chr16	protein_coding	calcium regulated heat stable protein 1
novel_NIR_7905	chr16	84827253	84827407	-	84827253	84853212	A5SS	ENSMUST00000005406.12	novel	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.00	0	11	0	11	n	0.20	2	8	2	8	y	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	ENSMUSG00000022892.12	App	chr16	protein_coding	amyloid beta (A4) precursor protein
novel_NIR_7906	chr16	84852577	84853212	-	84827253	84853212	A3SS	ENSMUST00000005406.12	novel	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.08	1	11	1	11	n	0.00	0	8	0	8	n	0.33	2	4	2	4	y	0.00	0	1	0	1	n	0.33	2	4	2	4	y	0.00	0	4	0	4	n	ENSMUSG00000022892.12	App	chr16	protein_coding	amyloid beta (A4) precursor protein
novel_NIR_7907	chr16	85284434	85341709	-	85219229	85341709	A3SS	ENSMUST00000175700.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041134.16	Cyyr1	chr16	protein_coding	cysteine and tyrosine-rich protein 1
novel_NIR_7908	chr16	85284434	85341709	-	85262579	85341709	A3SS	ENSMUST00000114174.3	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041134.16	Cyyr1	chr16	protein_coding	cysteine and tyrosine-rich protein 1
novel_NIR_7909	chr16	8534483	8555822	-	8534483	8539479	5pMXE	ENSMUST00000162445.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022710.18	Usp7	chr16	protein_coding	ubiquitin specific peptidase 7
novel_NIR_7910	chr16	8534483	8555822	-	8534483	8574680	A5SS	ENSMUST00000160405.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022710.18	Usp7	chr16	protein_coding	ubiquitin specific peptidase 7
novel_NIR_7911	chr16	86567285	86595896	-	86567285;86571910	86571766;86595896	ES	ENSMUST00000231875.2	novel	0.53	24	21.5	24	22;21	y	0.58	40	29.0	40	39;19	y	0.51	12	11.5	12	13;10	y	0.57	29	22.0	29	23;21	y	0.56	19	15.0	19	17;13	y	0.44	7	9.0	7	12;6	y	0.49	21	22.0	21	21;23	y	0.43	11	14.5	11	16;13	y	0.53	29	26.0	29	24;28	y	0.45	34	42.0	34	45;39	y	0.52	41	38.5	41	47;30	y	0.49	44	46.5	44	45;48	y	ENSMUSG00000116993.2	Gm32461	chr16	lncRNA	predicted gene, 32461
novel_NIR_7912	chr16	86567285;86596022	86595896;86600861	-	86567285	86600861	cassetteExon	ENSMUST00000232333.2	novel	0.57	34.0	26	24;44	26	y	0.59	43.0	30	40;46	30	y	0.48	14.0	15	12;16	15	y	0.51	35.5	34	29;42	34	y	0.38	25.0	41	19;31	41	y	0.39	7.0	11	7;7	11	y	0.45	39.0	48	21;57	48	y	0.48	19.5	21	11;28	21	y	0.57	35.5	27	29;42	27	y	0.48	44.5	49	34;55	49	y	0.51	46.5	44	41;52	44	y	0.52	68.0	63	44;92	63	y	ENSMUSG00000116993.2	Gm32461	chr16	lncRNA	predicted gene, 32461
novel_NIR_7913	chr16	86571910	86600861	-	86567285	86600861	A3SS	ENSMUST00000232333.2	novel	0.30	11	26	11	26	y	0.25	10	30	10	30	y	0.32	7	15	7	15	y	0.11	4	34	4	34	n	0.24	13	41	13	41	y	0.08	1	11	1	11	n	0.24	15	48	15	48	y	0.19	5	21	5	21	y	0.13	4	27	4	27	n	0.28	19	49	19	49	y	0.21	12	44	12	44	y	0.32	29	63	29	63	y	ENSMUSG00000116993.2	Gm32461	chr16	lncRNA	predicted gene, 32461
novel_NIR_7914	chr16	86596022	86597588	-	86596022	86598140	A5SS	ENSMUST00000231875.2	novel	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.27	3	8	3	8	y	0.17	1	5	1	5	n	0.00	0	7	0	7	n	ENSMUSG00000116993.2	Gm32461	chr16	lncRNA	predicted gene, 32461
novel_NIR_7915	chr16	86596022	86600861	-	86596022;86598325	86598140;86600861	ES	ENSMUST00000231875.2	novel	0.98	44	1.0	44	1;1	y	0.95	46	2.5	46	5;0	y	0.91	16	1.5	16	2;1	y	1.00	42	0.0	42	0;0	y	0.94	31	2.0	31	2;2	y	1.00	7	0.0	7	0;0	y	0.97	57	2.0	57	4;0	y	0.95	28	1.5	28	3;0	y	0.95	42	2.0	42	0;4	y	0.92	55	5.0	55	8;2	y	0.93	52	4.0	52	5;3	y	0.94	92	5.5	92	7;4	y	ENSMUSG00000116993.2	Gm32461	chr16	lncRNA	predicted gene, 32461
novel_NIR_7916	chr16	86596022;86598414	86598362;86600861	-	86596022;86598325	86598140;86600861	MXE	ENSMUST00000231875.2	novel	0.00	0.0	1.0	0;0	1;1	n	0.00	0.0	2.5	0;0	5;0	n	0.40	1.0	1.5	1;1	2;1	n	1.00	1.0	0.0	1;1	0;0	n	0.43	1.5	2.0	1;2	2;2	n	-	-	-	-	-	-	0.00	0.0	2.0	0;0	4;0	n	0.00	0.0	1.5	0;0	3;0	n	0.56	2.5	2.0	3;2	0;4	y	0.00	0.0	5.0	0;0	8;2	n	0.11	0.5	4.0	1;0	5;3	n	0.08	0.5	5.5	1;0	7;4	n	ENSMUSG00000116993.2	Gm32461	chr16	lncRNA	predicted gene, 32461
novel_NIR_7917	chr16	86598184	86600861	-	86598325	86600861	A3SS	ENSMUST00000231875.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000116993.2	Gm32461	chr16	lncRNA	predicted gene, 32461
novel_NIR_7918	chr16	86598453	86600861	-	86598325	86600861	A3SS	ENSMUST00000231875.2	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000116993.2	Gm32461	chr16	lncRNA	predicted gene, 32461
novel_NIR_7919	chr16	86600960	86605663	-	86600960	86602019	5pMXE	ENSMUST00000232333.2	novel	1.00	47	0	47	0	y	1.00	64	0	64	0	y	1.00	23	0	23	0	y	1.00	47	0	47	0	y	1.00	40	0	40	0	y	1.00	15	0	15	0	y	1.00	64	0	64	0	y	1.00	38	0	38	0	y	1.00	39	0	39	0	y	1.00	93	0	93	0	y	1.00	76	0	76	0	y	1.00	80	0	80	0	y	ENSMUSG00000116993.2	Gm32461	chr16	lncRNA	predicted gene, 32461
novel_NIR_7920	chr16	86600960	86605663	-	86600960	86603349	5pMXE	ENSMUST00000231875.2	novel	1.00	47	0	47	0	y	1.00	64	0	64	0	y	0.92	23	2	23	2	y	0.98	47	1	47	1	y	1.00	40	0	40	0	y	1.00	15	0	15	0	y	1.00	64	0	64	0	y	1.00	38	0	38	0	y	1.00	39	0	39	0	y	1.00	93	0	93	0	y	1.00	76	0	76	0	y	0.98	80	2	80	2	y	ENSMUSG00000116993.2	Gm32461	chr16	lncRNA	predicted gene, 32461
novel_NIR_7921	chr16	86624982	86673782	+	86624982;86632959	86632865;86673782	ES	ENSMUST00000231758.2	novel	0.00	0	1.0	0	1;1	n	0.00	0	1.0	0	2;0	n	-	-	-	-	-	-	0.50	1	1.0	1	2;0	n	0.00	0	1.0	0	1;1	n	0.80	2	0.5	2	0;1	y	0.80	4	1.0	4	2;0	y	-	-	-	-	-	-	0.00	0	1.5	0	0;3	n	0.47	4	4.5	4	7;2	y	-	-	-	-	-	-	0.75	3	1.0	3	2;0	y	ENSMUSG00000116810.2	Gm32624	chr16	lncRNA	predicted gene, 32624
novel_NIR_7922	chr16	86624982	86673782	+	86624982;86650672	86650484;86673782	ES	ENSMUST00000231555.2	novel	0.00	0	3.5	0	0;7	n	0.00	0	5.5	0	4;7	n	-	-	-	-	-	-	0.33	1	2.0	1	4;0	n	0.00	0	2.5	0	0;5	n	1.00	2	0.0	2	0;0	y	0.80	4	1.0	4	0;2	y	0.00	0	1.0	0	2;0	n	0.00	0	1.5	0	0;3	n	0.50	4	4.0	4	8;0	y	0.00	0	2.5	0	4;1	n	0.67	3	1.5	3	1;2	y	ENSMUSG00000116810.2	Gm32624	chr16	lncRNA	predicted gene, 32624
novel_NIR_7923	chr16	86632959	86671469	+	86632959	86673782	A3SS	ENSMUST00000231758.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000116810.2	Gm32624	chr16	lncRNA	predicted gene, 32624
novel_NIR_7924	chr16	87159491	87160232	+	87159491	87163027	A3SS	ENSMUST00000054442.11	novel	0.00	0	17	0	17	n	0.00	0	19	0	19	n	0.08	1	12	1	12	n	0.25	4	12	4	12	y	0.00	0	23	0	23	n	0.00	0	17	0	17	n	0.00	0	24	0	24	n	0.09	1	10	1	10	n	0.00	0	13	0	13	n	0.00	0	28	0	28	n	0.00	0	18	0	18	n	0.04	1	22	1	22	n	ENSMUSG00000044442.12	N6amt1	chr16	protein_coding	N-6 adenine-specific DNA methyltransferase 1 (putative)
novel_NIR_7925	chr16	87159491	87160232	+	87159491	87164353	A3SS	ENSMUST00000118310.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.12	1	7	1	7	n	1.00	4	0	4	0	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.12	1	7	1	7	n	ENSMUSG00000044442.12	N6amt1	chr16	protein_coding	N-6 adenine-specific DNA methyltransferase 1 (putative)
novel_NIR_7926	chr16	87220466	87222456	-	87220466;87221769	87221717;87222456	ES	ENSMUST00000039449.9	novel	0.07	1	13.0	1	14;12	n	0.00	0	2.5	0	2;3	n	0.04	1	25.0	1	32;18	n	0.00	0	23.0	0	25;21	n	0.03	1	29.0	1	28;30	n	0.00	0	15.0	0	16;14	n	0.00	0	13.5	0	17;10	n	0.15	3	17.5	3	16;19	y	0.00	0	6.5	0	7;6	n	0.00	0	19.0	0	18;20	n	0.00	0	11.5	0	11;12	n	0.00	0	11.5	0	15;8	n	ENSMUSG00000052299.10	Ltn1	chr16	protein_coding	listerin E3 ubiquitin protein ligase 1
novel_NIR_7927	chr16	87255630	87258859	+	87255630	87261623	A3SS	ENSMUST00000177538.2	novel	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000025616.15	Usp16	chr16	protein_coding	ubiquitin specific peptidase 16
novel_NIR_7928	chr16	87291315	87292332	-	87291315	87292467	A5SS	ENSMUST00000176750.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.40	2	3	2	3	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025613.14	Cct8	chr16	protein_coding	chaperonin containing Tcp1, subunit 8 (theta)
novel_NIR_7929	chr16	87511801	87512219	+	87495944	87512219	A5SS	ENSMUST00000026703.6	novel	0.00	0	17	0	17	n	0.00	0	4	0	4	n	0.00	0	30	0	30	n	0.00	0	28	0	28	n	0.15	7	40	7	40	y	0.00	0	20	0	20	n	0.15	4	22	4	22	y	0.00	0	16	0	16	n	0.05	1	19	1	19	n	0.00	0	25	0	25	n	0.00	0	14	0	14	n	0.03	1	35	1	35	n	ENSMUSG00000025612.6	Bach1	chr16	protein_coding	BTB and CNC homology 1, basic leucine zipper transcription factor 1
novel_NIR_7930	chr16	87512512	87515942	+	87512512	87515695	A3SS	ENSMUST00000026703.6	novel	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.03	1	28	1	28	n	0.00	0	30	0	30	n	0.08	3	35	3	35	n	0.21	4	15	4	15	y	0.06	2	33	2	33	n	0.12	3	23	3	23	n	0.09	2	20	2	20	n	0.00	0	37	0	37	n	0.05	1	18	1	18	n	0.02	1	51	1	51	n	ENSMUSG00000025612.6	Bach1	chr16	protein_coding	BTB and CNC homology 1, basic leucine zipper transcription factor 1
novel_NIR_7931	chr16	90141020	90146309	-	90139496	90146309	A3SS	ENSMUST00000231663.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000116656.2	Gm49708	chr16	lncRNA	predicted gene, 49708
novel_NIR_7932	chr16	90543614	90544263	+	90535557	90544263	A5SS	ENSMUST00000138984.8	novel	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.17	3	15	3	15	y	0.00	0	5	0	5	n	0.12	1	7	1	7	n	0.00	0	16	0	16	n	0.00	0	19	0	19	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.08	1	12	1	12	n	0.14	2	12	2	12	n	0.00	0	6	0	6	n	ENSMUSG00000039956.10	Mrap	chr16	protein_coding	melanocortin 2 receptor accessory protein
novel_NIR_7933	chr16	90728047	90731470	-	90724396	90731470	A3SS	ENSMUST00000131583.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022972.11	Cfap298	chr16	protein_coding	cilia and flagella associate protien 298
novel_NIR_7934	chr16	90728047	90731470	-	90727998	90731470	A3SS	ENSMUST00000149833.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022972.11	Cfap298	chr16	protein_coding	cilia and flagella associate protien 298
novel_NIR_7935	chr16	90735922	90736522	-	90735922	90737361	A5SS	ENSMUST00000170853.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022973.19	Synj1	chr16	protein_coding	synaptojanin 1
novel_NIR_7936	chr16	90735922	90736522	-	90735922	90741243	A5SS	ENSMUST00000121759.8	novel	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.25	2	6	2	6	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	ENSMUSG00000022973.19	Synj1	chr16	protein_coding	synaptojanin 1
novel_NIR_7937	chr16	90752359	90753707	-	90752359	90754482	A5SS	ENSMUST00000121759.8	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.18	2	9	2	9	y	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	ENSMUSG00000022973.19	Synj1	chr16	protein_coding	synaptojanin 1
novel_NIR_7938	chr16	90824217	90824915	-	90824217	90827321	A5SS	ENSMUST00000118522.8	novel	0.15	2	11	2	11	y	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	19	0	19	n	0.09	1	10	1	10	n	0.00	0	1	0	1	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	ENSMUSG00000022974.13	Paxbp1	chr16	protein_coding	PAX3 and PAX7 binding protein 1
novel_NIR_7939	chr16	91181912	91182839	+	91181912	91184832	A3SS	ENSMUST00000134491.9	novel	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.72	21	8	21	8	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	ENSMUSG00000022971.19	Ifnar2	chr16	protein_coding	interferon (alpha and beta) receptor 2
novel_NIR_7940	chr16	91181912	91184837	+	91181912	91184832	A3SS	ENSMUST00000134491.9	novel	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.40	4	6	4	6	y	0.00	0	4	0	4	n	0.50	1	1	1	1	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	ENSMUSG00000022971.19	Ifnar2	chr16	protein_coding	interferon (alpha and beta) receptor 2
novel_NIR_7941	chr16	91293149	91293260	+	91293149	91295461	A3SS	ENSMUST00000123196.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000022967.14	Ifnar1	chr16	protein_coding	interferon (alpha and beta) receptor 1
novel_NIR_7942	chr16	91352026	91354773	+	91344120	91354773	A5SS	ENSMUST00000127644.2	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000022965.9	Ifngr2	chr16	protein_coding	interferon gamma receptor 2
novel_NIR_7943	chr16	91383969	91394478	-	91383969	91394470	A5SS	ENSMUST00000023686.15	novel	0.40	2	3	2	3	y	0.00	0	5	0	5	n	0.00	0	24	0	24	n	0.00	0	7	0	7	n	0.00	0	19	0	19	n	0.00	0	5	0	5	n	0.00	0	17	0	17	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	18	0	18	n	0.00	0	11	0	11	n	ENSMUSG00000022964.15	Tmem50b	chr16	protein_coding	transmembrane protein 50B
novel_NIR_7944	chr16	91414267	91415779	-	91414267	91415476	A5SS	ENSMUST00000169982.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039763.11	Dnajc28	chr16	protein_coding	DnaJ heat shock protein family (Hsp40) member C28
novel_NIR_7945	chr16	91414267	91415779	-	91414267	91415646	A5SS	ENSMUST00000049244.10	novel	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.08	1	11	1	11	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.16	3	16	3	16	y	0.00	0	12	0	12	n	0.00	0	14	0	14	n	ENSMUSG00000039763.11	Dnajc28	chr16	protein_coding	DnaJ heat shock protein family (Hsp40) member C28
novel_NIR_7946	chr16	91414267	91415779	-	91414267	91415806	A5SS	ENSMUST00000133731.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039763.11	Dnajc28	chr16	protein_coding	DnaJ heat shock protein family (Hsp40) member C28
novel_NIR_7947	chr16	91474988	91475042	+	91474592	91475042	A5SS	ENSMUST00000117633.8	novel	0.00	0	60	0	60	n	0.00	0	53	0	53	n	0.00	0	89	0	89	n	0.00	0	51	0	51	n	0.00	0	102	0	102	n	0.00	0	55	0	55	n	0.00	0	76	0	76	n	0.00	0	55	0	55	n	0.00	0	44	0	44	n	0.00	0	76	0	76	n	0.17	13	64	13	64	y	0.00	0	66	0	66	n	ENSMUSG00000022961.19	Son	chr16	protein_coding	Son DNA binding protein
novel_NIR_7948	chr16	91480699	91480973	-	91480699	91481190	A5SS	ENSMUST00000133942.8	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	0.12	2	14	2	14	n	0.33	2	4	2	4	y	0.50	2	2	2	2	y	0.00	0	6	0	6	n	0.17	1	5	1	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	ENSMUSG00000022960.14	Donson	chr16	protein_coding	downstream neighbor of SON
novel_NIR_7949	chr16	91480699	91480973	-	91480699	91483055	A5SS	ENSMUST00000139324.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000022960.14	Donson	chr16	protein_coding	downstream neighbor of SON
novel_NIR_7950	chr16	91489815	91491070	-	91489287	91491070	A3SS	ENSMUST00000144472.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000058240.15	Cryzl1	chr16	protein_coding	crystallin, zeta (quinone reductase)-like 1
novel_NIR_7951	chr16	91491184	91492149	-	91491553	91492149	3pMXE	ENSMUST00000114023.3	novel	0.00	0	6	0	6	n	0.00	0	1	0	1	n	1.00	5	0	5	0	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	ENSMUSG00000058240.15	Cryzl1	chr16	protein_coding	crystallin, zeta (quinone reductase)-like 1
novel_NIR_7952	chr16	91491928	91492149	-	91491553	91492149	A3SS	ENSMUST00000114023.3	novel	0.00	0	6	0	6	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	ENSMUSG00000058240.15	Cryzl1	chr16	protein_coding	crystallin, zeta (quinone reductase)-like 1
novel_NIR_7953	chr16	91498093	91505717	-	91498093	91509083	A5SS	ENSMUST00000122254.8	novel	0.50	2	2	2	2	y	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000058240.15	Cryzl1	chr16	protein_coding	crystallin, zeta (quinone reductase)-like 1
novel_NIR_7954	chr16	91544488	91579049	+	91527463	91579049	A5SS	ENSMUST00000231535.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022957.21	Itsn1	chr16	protein_coding	intersectin 1 (SH3 domain protein 1A)
novel_NIR_7955	chr16	91544488	91579049	+	91553120	91579049	5pMXE	ENSMUST00000231974.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022957.21	Itsn1	chr16	protein_coding	intersectin 1 (SH3 domain protein 1A)
novel_NIR_7956	chr16	91544940	91579049	+	91526487	91579049	A5SS	ENSMUST00000114001.8	novel	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.09	3	30	3	30	n	0.00	0	6	0	6	n	0.00	0	23	0	23	n	0.17	3	15	3	15	y	0.00	0	24	0	24	n	0.00	0	10	0	10	n	0.08	1	12	1	12	n	0.06	1	16	1	16	n	0.40	2	3	2	3	y	0.00	0	21	0	21	n	ENSMUSG00000022957.21	Itsn1	chr16	protein_coding	intersectin 1 (SH3 domain protein 1A)
novel_NIR_7957	chr16	91544940	91579049	+	91527463	91579049	A5SS	ENSMUST00000231535.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000022957.21	Itsn1	chr16	protein_coding	intersectin 1 (SH3 domain protein 1A)
novel_NIR_7958	chr16	91544940	91579049	+	91553120	91579049	5pMXE	ENSMUST00000231974.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000022957.21	Itsn1	chr16	protein_coding	intersectin 1 (SH3 domain protein 1A)
novel_NIR_7959	chr16	91647853	91651461	+	91647853	91649751	3pMXE	ENSMUST00000153741.2	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.80	4	1	4	1	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022957.21	Itsn1	chr16	protein_coding	intersectin 1 (SH3 domain protein 1A)
novel_NIR_7960	chr16	91723858	91725787	-	91723459	91725787	A3SS	ENSMUST00000155452.8	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.88	7	1	7	1	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000022956.12	Atp5o	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit
novel_NIR_7961	chr16	91854937	91896482	+	91856180	91896482	5pMXE	ENSMUST00000232222.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039680.11	Mrps6	chr16	protein_coding	mitochondrial ribosomal protein S6
novel_NIR_7962	chr16	91887555	91896482	+	91856180	91896482	A5SS	ENSMUST00000232222.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039680.11	Mrps6	chr16	protein_coding	mitochondrial ribosomal protein S6
novel_NIR_7963	chr16	93144076	93150867	-	93144076	93149919	5pMXE	ENSMUST00000185971.7	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.67	2	1	2	1	y	ENSMUSG00000100277.9	1810053B23Rik	chr16	lncRNA	RIKEN cDNA 1810053B23 gene
novel_NIR_7964	chr16	93144076	93150867	-	93144076	93155513	A5SS	ENSMUST00000231377.2	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000100277.9	1810053B23Rik	chr16	lncRNA	RIKEN cDNA 1810053B23 gene
novel_NIR_7965	chr16	93144076	93150867	-	93144076	93155883	A5SS	ENSMUST00000232511.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000100277.9	1810053B23Rik	chr16	lncRNA	RIKEN cDNA 1810053B23 gene
novel_NIR_7966	chr16	93144076	93150867	-	93144076;93150128	93149919;93150867	ES	ENSMUST00000232140.2	novel	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	1.00	1	0.0	1	0;0	n	0.80	2	0.5	2	1;0	y	ENSMUSG00000100277.9	1810053B23Rik	chr16	lncRNA	RIKEN cDNA 1810053B23 gene
novel_NIR_7967	chr16	93161675	93166704	-	93161675	93161954	5pMXE	ENSMUST00000232060.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000100277.9	1810053B23Rik	chr16	lncRNA	RIKEN cDNA 1810053B23 gene
novel_NIR_7968	chr16	93161675	93166704	-	93161675	93162257	5pMXE	ENSMUST00000232511.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000100277.9	1810053B23Rik	chr16	lncRNA	RIKEN cDNA 1810053B23 gene
novel_NIR_7969	chr16	93161675	93166704	-	93161675	93163537	5pMXE	ENSMUST00000232456.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000100277.9	1810053B23Rik	chr16	lncRNA	RIKEN cDNA 1810053B23 gene
novel_NIR_7970	chr16	93165414	93165674	+	93165414	93165670	A3SS	ENSMUST00000232030.2	novel	0.00	0	12	0	12	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.14	1	6	1	6	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.17	1	5	1	5	n	ENSMUSG00000116846.2	1810044K17Rik	chr16	lncRNA	RIKEN cDNA 1810044K17 gene
novel_NIR_7971	chr16	93382961	93383125	-	93382842	93383125	A3SS	ENSMUST00000233969.2	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	ENSMUSG00000022948.17	Setd4	chr16	protein_coding	SET domain containing 4
novel_NIR_7972	chr16	93384788	93386587	-	93384788	93384898	5pMXE	ENSMUST00000140619.2	novel	1.00	20	0	20	0	y	1.00	14	0	14	0	y	-	-	-	-	-	-	1.00	10	0	10	0	y	1.00	9	0	9	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	7	0	7	0	y	1.00	15	0	15	0	y	1.00	13	0	13	0	y	1.00	18	0	18	0	y	1.00	9	0	9	0	y	ENSMUSG00000022948.17	Setd4	chr16	protein_coding	SET domain containing 4
novel_NIR_7973	chr16	93384788	93386587	-	93384788	93386799	A5SS	ENSMUST00000123756.8	novel	0.43	20	26	20	26	y	0.35	14	26	14	26	y	0.00	0	7	0	7	n	0.30	10	23	10	23	y	0.29	9	22	9	22	y	0.00	0	2	0	2	n	0.06	1	15	1	15	n	0.44	7	9	7	9	y	0.47	15	17	15	17	y	0.54	13	11	13	11	y	0.37	18	31	18	31	y	0.35	9	17	9	17	y	ENSMUSG00000022948.17	Setd4	chr16	protein_coding	SET domain containing 4
novel_NIR_7974	chr16	93384788	93386974	-	93384788	93384898	5pMXE	ENSMUST00000140619.2	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022948.17	Setd4	chr16	protein_coding	SET domain containing 4
novel_NIR_7975	chr16	93384788	93386978	-	93384788	93384898	5pMXE	ENSMUST00000140619.2	novel	1.00	1	0	1	0	n	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	2	0	2	0	y	ENSMUSG00000022948.17	Setd4	chr16	protein_coding	SET domain containing 4
novel_NIR_7976	chr16	93384788	93386978	-	93384788	93386799	A5SS&ES	ENSMUST00000123756.8	novel	0.04	1	26	1	26	n	0.16	5	26	5	26	y	0.00	0	7	0	7	n	0.08	2	23	2	23	n	0.04	1	22	1	22	n	0.00	0	2	0	2	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.06	1	17	1	17	n	0.08	1	11	1	11	n	0.09	3	31	3	31	n	0.11	2	17	2	17	n	ENSMUSG00000022948.17	Setd4	chr16	protein_coding	SET domain containing 4
novel_NIR_7977	chr16	93388191	93393186	-	93388191	93390135	5pMXE	ENSMUST00000233419.2	novel	0.11	1	8	1	8	n	0.23	3	10	3	10	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.40	2	3	2	3	y	0.25	1	3	1	3	n	0.00	0	13	0	13	n	ENSMUSG00000022948.17	Setd4	chr16	protein_coding	SET domain containing 4
novel_NIR_7978	chr16	93388191	93393186	-	93388191;93390220	93390135;93393186	ES	ENSMUST00000232870.2	novel	0.20	1	4.0	1	8;0	n	0.38	3	5.0	3	10;0	y	-	-	-	-	-	-	0.00	0	2.0	0	4;0	n	0.40	1	1.5	1	3;0	n	-	-	-	-	-	-	0.00	0	2.0	0	4;0	n	0.00	0	2.0	0	4;0	n	0.00	0	2.0	0	4;0	n	0.57	2	1.5	2	3;0	y	0.40	1	1.5	1	3;0	n	0.00	0	6.5	0	13;0	n	ENSMUSG00000022948.17	Setd4	chr16	protein_coding	SET domain containing 4
novel_NIR_7979	chr16	93388191	93393186	-	93388191;93390223	93390135;93393186	ES	ENSMUST00000123756.8	novel	0.20	1	4.0	1	8;0	n	0.27	3	8.0	3	10;6	y	0.00	0	2.5	0	0;5	n	0.00	0	3.5	0	4;3	n	0.33	1	2.0	1	3;1	n	0.00	0	1.5	0	0;3	n	0.00	0	3.5	0	4;3	n	0.00	0	3.5	0	4;3	n	0.00	0	5.0	0	4;6	n	0.36	2	3.5	2	3;4	y	0.40	1	1.5	1	3;0	n	0.00	0	10.0	0	13;7	n	ENSMUSG00000022948.17	Setd4	chr16	protein_coding	SET domain containing 4
novel_NIR_7980	chr16	93388348	93394951	+	93388348	93394214	3pMXE	ENSMUST00000233219.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000117317.2	Gm49961	chr16	lncRNA	predicted gene, 49961
novel_NIR_7981	chr16	93388348	93403633	+	93388348	93394214	3pMXE	ENSMUST00000233219.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000117317.2	Gm49961	chr16	lncRNA	predicted gene, 49961
novel_NIR_7982	chr16	93388348	93403633	+	93403249	93403633	5pMXE	ENSMUST00000232551.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.75	3	1	3	1	y	ENSMUSG00000051483.10	Cbr1	chr16	protein_coding	carbonyl reductase 1
novel_NIR_7983	chr16	93388348	93404865	+	93388348	93394214	3pMXE	ENSMUST00000233219.2	novel	1.00	6	0	6	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	14	0	14	0	y	-	-	-	-	-	-	0.50	2	2	2	2	y	1.00	5	0	5	0	y	0.00	0	1	0	1	n	1.00	8	0	8	0	y	1.00	19	0	19	0	y	1.00	15	0	15	0	y	ENSMUSG00000117317.2	Gm49961	chr16	lncRNA	predicted gene, 49961
novel_NIR_7984	chr16	93388348	93404868	+	93388348	93394214	3pMXE	ENSMUST00000233219.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	0.67	4	2	4	2	y	-	-	-	-	-	-	0.80	4	1	4	1	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	ENSMUSG00000117317.2	Gm49961	chr16	lncRNA	predicted gene, 49961
novel_NIR_7985	chr16	93393223	93394249	-	93393223	93396100	A5SS	ENSMUST00000123756.8	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.25	1	3	1	3	n	1.00	2	0	2	0	n	0.00	0	4	0	4	n	1.00	1	0	1	0	n	0.57	4	3	4	3	y	0.67	4	2	4	2	n	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000022948.17	Setd4	chr16	protein_coding	SET domain containing 4
novel_NIR_7986	chr16	93393223	93395205	-	93393223	93396100	A5SS	ENSMUST00000123756.8	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000022948.17	Setd4	chr16	protein_coding	SET domain containing 4
novel_NIR_7987	chr16	93393223;93394308	93394249;93396100	-	93393223	93396100	cassetteExon	ENSMUST00000123756.8	novel	-	-	-	-	-	-	0.00	0.0	3	0;0	3	n	0.00	0.0	4	0;0	4	n	-	-	-	-	-	-	0.14	0.5	3	1;0	3	n	1.00	2.0	0	2;2	0	y	0.00	0.0	4	0;0	4	n	1.00	0.5	0	1;0	0	n	0.40	2.0	3	4;0	3	n	0.60	3.0	2	4;2	2	y	-	-	-	-	-	-	1.00	2.0	0	4;0	0	n	ENSMUSG00000022948.17	Setd4	chr16	protein_coding	SET domain containing 4
novel_NIR_7988	chr16	93395553	93396100	-	93393223	93396100	A3SS	ENSMUST00000123756.8	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022948.17	Setd4	chr16	protein_coding	SET domain containing 4
novel_NIR_7989	chr16	93540526	93544352	+	93537027	93544352	A5SS	ENSMUST00000045004.11	novel	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.44	4	5	4	5	y	0.00	0	25	0	25	n	0.03	1	30	1	30	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.07	1	14	1	14	n	0.00	0	17	0	17	n	0.00	0	27	0	27	n	0.00	0	14	0	14	n	0.00	0	44	0	44	n	ENSMUSG00000022946.11	Dop1b	chr16	protein_coding	DOP1 leucine zipper like protein B
novel_NIR_7990	chr16	93546274	93546778	+	93546110	93546778	A5SS	ENSMUST00000045004.11	novel	0.04	1	25	1	25	n	0.12	1	7	1	7	n	0.00	0	11	0	11	n	0.04	2	43	2	43	n	0.05	3	61	3	61	n	0.19	3	13	3	13	y	0.05	1	21	1	21	n	0.05	1	20	1	20	n	0.05	1	18	1	18	n	0.05	2	39	2	39	n	0.00	0	21	0	21	n	0.05	2	40	2	40	n	ENSMUSG00000022946.11	Dop1b	chr16	protein_coding	DOP1 leucine zipper like protein B
novel_NIR_7991	chr16	93600478	93602963	+	93600478	93603276	A3SS	ENSMUST00000226215.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022946.11	Dop1b	chr16	protein_coding	DOP1 leucine zipper like protein B
novel_NIR_7992	chr16	93600478	93602963	+	93600478	93603293	A3SS	ENSMUST00000231882.2	novel	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.50	2	2	2	2	y	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	ENSMUSG00000022946.11	Dop1b	chr16	protein_coding	DOP1 leucine zipper like protein B
novel_NIR_7993	chr16	93716925	93725112	-	93716925	93739156	A5SS	ENSMUST00000050962.5	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000047109.14	Cldn14	chr16	protein_coding	claudin 14
novel_NIR_7994	chr16	93716925	93726261	-	93716925	93726197	A5SS	ENSMUST00000177648.8	novel	0.08	3	33	3	33	n	0.06	2	30	2	30	n	0.14	19	120	19	120	n	0.03	1	38	1	38	n	0.04	2	51	2	51	n	0.04	3	70	3	70	n	0.06	2	33	2	33	n	0.04	2	46	2	46	n	0.15	3	17	3	17	y	0.05	2	36	2	36	n	0.00	0	28	0	28	n	0.14	6	37	6	37	n	ENSMUSG00000047109.14	Cldn14	chr16	protein_coding	claudin 14
novel_NIR_7995	chr16	93716925	93726261	-	93716925	93726257	A5SS	ENSMUST00000169391.8	novel	0.09	3	29	3	29	n	0.07	2	27	2	27	n	0.11	19	154	19	154	n	0.05	1	21	1	21	n	0.03	2	62	2	62	n	0.05	3	52	3	52	n	0.07	2	26	2	26	n	0.05	2	41	2	41	n	0.11	3	24	3	24	n	0.08	2	23	2	23	n	0.00	0	15	0	15	n	0.21	6	22	6	22	y	ENSMUSG00000047109.14	Cldn14	chr16	protein_coding	claudin 14
novel_NIR_7996	chr16	93716925	93726261	-	93716925	93739156	A5SS	ENSMUST00000050962.5	novel	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	19	0	19	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	ENSMUSG00000047109.14	Cldn14	chr16	protein_coding	claudin 14
novel_NIR_7997	chr16	93716925	93726284	-	93716925	93739156	A5SS	ENSMUST00000050962.5	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	11	0	11	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000047109.14	Cldn14	chr16	protein_coding	claudin 14
novel_NIR_7998	chr16	93940168	93942208	-	93939828	93942208	A3SS	ENSMUST00000228910.2	novel	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.00	0	16	0	16	n	0.00	0	21	0	21	n	0.15	2	11	2	11	y	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	ENSMUSG00000040820.17	Hlcs	chr16	protein_coding	holocarboxylase synthetase (biotin-
novel_NIR_7999	chr16	94069557	94088686	-	94069557	94088651	A5SS	ENSMUST00000163193.9	novel	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.17	2	10	2	10	y	0.18	3	14	3	14	y	0.15	3	17	3	17	y	0.00	0	6	0	6	n	0.08	1	12	1	12	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.14	1	6	1	6	n	0.00	0	9	0	9	n	0.12	1	7	1	7	n	ENSMUSG00000040820.17	Hlcs	chr16	protein_coding	holocarboxylase synthetase (biotin-
novel_NIR_8000	chr16	94088785	94103804	-	94088785	94090922	5pMXE	ENSMUST00000227141.2	novel	0.33	1	2	1	2	n	0.33	1	2	1	2	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.32	6	13	6	13	y	0.09	1	10	1	10	n	0.17	2	10	2	10	y	0.38	3	5	3	5	y	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.25	1	3	1	3	n	0.50	2	2	2	2	y	ENSMUSG00000040820.17	Hlcs	chr16	protein_coding	holocarboxylase synthetase (biotin-
novel_NIR_8001	chr16	94088785	94103804	-	94088785	94114377	A5SS	ENSMUST00000163193.9	novel	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	6	0	6	0	y	1.00	1	0	1	0	n	0.67	2	1	2	1	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000040820.17	Hlcs	chr16	protein_coding	holocarboxylase synthetase (biotin-
novel_NIR_8002	chr16	94160033	94165567	-	94160033	94166214	A5SS	ENSMUST00000113917.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000022940.18	Pigp	chr16	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class P
novel_NIR_8003	chr16	94171051	94171733	-	94171051	94171754	A5SS	ENSMUST00000113905.8	novel	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.25	2	6	2	6	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	ENSMUSG00000022940.18	Pigp	chr16	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class P
novel_NIR_8004	chr16	94171051	94171733	-	94171051	94172603	A5SS	ENSMUST00000232294.2	novel	0.17	1	5	1	5	n	0.00	0	12	0	12	n	0.00	0	1	0	1	n	0.00	0	12	0	12	n	0.22	2	7	2	7	y	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	29	0	29	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	ENSMUSG00000022940.18	Pigp	chr16	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class P
novel_NIR_8005	chr16	94171051	94171812	-	94171051	94171600	A5SS	ENSMUST00000113914.8	novel	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.00	0	19	0	19	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.22	2	7	2	7	y	0.08	1	11	1	11	n	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.00	0	21	0	21	n	0.17	1	5	1	5	n	0.00	0	9	0	9	n	ENSMUSG00000022940.18	Pigp	chr16	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class P
novel_NIR_8006	chr16	94171051	94171812	-	94171051	94171754	A5SS	ENSMUST00000113905.8	novel	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.40	2	3	2	3	y	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	6	0	6	n	ENSMUSG00000022940.18	Pigp	chr16	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class P
novel_NIR_8007	chr16	94171051	94171812	-	94171051	94172603	A5SS	ENSMUST00000232294.2	novel	0.17	1	5	1	5	n	0.00	0	12	0	12	n	0.00	0	1	0	1	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.67	2	1	2	1	y	0.14	1	6	1	6	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	29	0	29	n	0.14	1	6	1	6	n	0.00	0	9	0	9	n	ENSMUSG00000022940.18	Pigp	chr16	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class P
novel_NIR_8008	chr16	94253891	94255289	+	94253891	94255286	A3SS	ENSMUST00000117648.9	novel	0.21	7	27	7	27	y	0.00	0	8	0	8	n	0.18	6	27	6	27	y	0.13	2	13	2	13	n	0.19	7	30	7	30	y	0.00	0	11	0	11	n	0.04	1	27	1	27	n	0.30	6	14	6	14	y	0.00	0	17	0	17	n	0.35	11	20	11	20	y	0.17	3	15	3	15	y	0.29	5	12	5	12	y	ENSMUSG00000040785.20	Ttc3	chr16	protein_coding	tetratricopeptide repeat domain 3
novel_NIR_8009	chr16	94411368	94412278	+	94371393	94412278	A5SS	ENSMUST00000119878.8	novel	0.29	2	5	2	5	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000022897.16	Dyrk1a	chr16	protein_coding	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a
novel_NIR_8010	chr16	94411368	94412278	+	94371835	94412278	A5SS	ENSMUST00000139250.8	novel	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022897.16	Dyrk1a	chr16	protein_coding	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a
novel_NIR_8011	chr16	95790798	95803634	-	95795177	95803634	3pMXE	ENSMUST00000099502.9	novel	0.67	2	1	2	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.80	4	1	4	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000022914.18	Brwd1	chr16	protein_coding	bromodomain and WD repeat domain containing 1
novel_NIR_8012	chr16	95804477	95809338	-	95806330	95809338	3pMXE	ENSMUST00000233883.2	novel	1.00	7	0	7	0	y	1.00	5	0	5	0	y	0.89	8	1	8	1	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	ENSMUSG00000022914.18	Brwd1	chr16	protein_coding	bromodomain and WD repeat domain containing 1
novel_NIR_8013	chr16	95806285	95809037	-	95806330	95809037	A3SS	ENSMUST00000232993.2	novel	0.33	2	4	2	4	y	0.00	0	4	0	4	n	0.00	0	22	0	22	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	ENSMUSG00000022914.18	Brwd1	chr16	protein_coding	bromodomain and WD repeat domain containing 1
novel_NIR_8014	chr16	96199164	96200233	+	96199164	96208746	A3SS	ENSMUST00000136292.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000000159.17	Igsf5	chr16	protein_coding	immunoglobulin superfamily, member 5
novel_NIR_8015	chr16	96199164	96200233	+	96199164	96295016	A3SS	ENSMUST00000113795.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000117081.2	Gm49948	chr16	protein_coding	predicted gene, 49948
novel_NIR_8016	chr16	96199164	96208653	+	96199164	96208746	A3SS	ENSMUST00000136292.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000000159.17	Igsf5	chr16	protein_coding	immunoglobulin superfamily, member 5
novel_NIR_8017	chr16	96199164	96208653	+	96199164	96295016	A3SS	ENSMUST00000113795.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000117081.2	Gm49948	chr16	protein_coding	predicted gene, 49948
novel_NIR_8018	chr16	96199164	96208709	+	96199164	96208746	A3SS	ENSMUST00000136292.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000000159.17	Igsf5	chr16	protein_coding	immunoglobulin superfamily, member 5
novel_NIR_8019	chr16	96199164	96208709	+	96199164	96295016	A3SS	ENSMUST00000113795.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000117081.2	Gm49948	chr16	protein_coding	predicted gene, 49948
novel_NIR_8020	chr16	96199164	96223545	+	96199164	96295016	A3SS	ENSMUST00000113795.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000117081.2	Gm49948	chr16	protein_coding	predicted gene, 49948
novel_NIR_8021	chr16	96204537	96222935	+	96208784	96222935	A5SS&ES	ENSMUST00000136292.2	novel	0.25	1	3	1	3	n	0.10	1	9	1	9	n	0.75	3	1	3	1	y	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.22	2	7	2	7	y	0.12	1	7	1	7	n	0.20	1	4	1	4	n	ENSMUSG00000000159.17	Igsf5	chr16	protein_coding	immunoglobulin superfamily, member 5
novel_NIR_8022	chr16	97279607	97279791	-	97279607	97282987	A5SS	ENSMUST00000049721.9	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022938.9	Fam3b	chr16	protein_coding	family with sequence similarity 3, member B
novel_NIR_8023	chr16	97279607	97279791	-	97279607	97302060	A5SS	ENSMUST00000231641.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000022938.9	Fam3b	chr16	protein_coding	family with sequence similarity 3, member B
novel_NIR_8024	chr16	97556559	97564280	-	97556559	97564728	A5SS	ENSMUST00000019386.10	novel	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.16	3	16	3	16	y	0.00	0	20	0	20	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.11	1	8	1	8	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.06	1	17	1	17	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	ENSMUSG00000005251.16	Ripk4	chr16	protein_coding	receptor-interacting serine-threonine kinase 4
novel_NIR_8025	chr16	97637030	97638361	-	97637030	97638774	A5SS	ENSMUST00000095849.10	novel	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.38	3	5	3	5	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000014039.19	Prdm15	chr16	protein_coding	PR domain containing 15
novel_NIR_8026	chr16	97687407	97691206	-	97687410	97691206	A3SS	ENSMUST00000232572.2	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.11	1	8	1	8	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	ENSMUSG00000045975.9	C2cd2	chr16	protein_coding	C2 calcium-dependent domain containing 2
novel_NIR_8027	chr16	97687407	97691214	-	97687410	97691214	A3SS	ENSMUST00000170757.3	novel	0.13	14	92	14	92	n	0.04	3	70	3	70	n	0.05	4	74	4	74	n	0.12	19	134	19	134	n	0.09	15	149	15	149	n	0.11	5	39	5	39	n	0.15	24	141	24	141	y	0.20	12	47	12	47	y	0.12	14	107	14	107	n	0.10	17	150	17	150	n	0.12	13	96	13	96	n	0.12	19	137	19	137	n	ENSMUSG00000045975.9	C2cd2	chr16	protein_coding	C2 calcium-dependent domain containing 2
novel_NIR_8028	chr16	97713904	97737799	-	97713904	97723531	5pMXE	ENSMUST00000231953.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045975.9	C2cd2	chr16	protein_coding	C2 calcium-dependent domain containing 2
novel_NIR_8029	chr16	97713904	97737799	-	97713904	97763713	A5SS	ENSMUST00000232165.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045975.9	C2cd2	chr16	protein_coding	C2 calcium-dependent domain containing 2
novel_NIR_8030	chr16	97737948	97754128	-	97752069	97754128	3pMXE	ENSMUST00000232187.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000046962.17	Zbtb21	chr16	protein_coding	zinc finger and BTB domain containing 21
novel_NIR_8031	chr16	97754293	97762899	-	97754293	97757958	A5SS&ES	ENSMUST00000113734.9	novel	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.50	3	3	3	3	y	0.00	0	10	0	10	n	0.12	1	7	1	7	n	0.00	0	2	0	2	n	0.00	0	18	0	18	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	ENSMUSG00000046962.17	Zbtb21	chr16	protein_coding	zinc finger and BTB domain containing 21
novel_NIR_8032	chr16	97754293	97762899	-	97754293	97763614	A5SS	ENSMUST00000063605.15	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.75	3	1	3	1	y	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000046962.17	Zbtb21	chr16	protein_coding	zinc finger and BTB domain containing 21
novel_NIR_8033	chr16	97754293	97763713	-	97713904	97763713	A3SS	ENSMUST00000232165.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000045975.9	C2cd2	chr16	protein_coding	C2 calcium-dependent domain containing 2
novel_NIR_8034	chr16	97754293	97763713	-	97744875	97763713	A3SS	ENSMUST00000232010.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000046962.17	Zbtb21	chr16	protein_coding	zinc finger and BTB domain containing 21
novel_NIR_8035	chr16	97754293	97763713	-	97754293	97757958	A5SS&ES	ENSMUST00000113734.9	novel	0.67	2	1	2	1	y	0.00	0	10	0	10	n	0.10	1	9	1	9	n	0.25	1	3	1	3	n	0.09	1	10	1	10	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.10	2	18	2	18	n	0.00	0	8	0	8	n	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.17	1	5	1	5	n	ENSMUSG00000046962.17	Zbtb21	chr16	protein_coding	zinc finger and BTB domain containing 21
novel_NIR_8036	chr16	97754293	97763713	-	97754293	97763614	A5SS	ENSMUST00000063605.15	novel	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.50	1	1	1	1	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	ENSMUSG00000046962.17	Zbtb21	chr16	protein_coding	zinc finger and BTB domain containing 21
novel_NIR_8037	chr16	97754293	97763713	-	97754293;97758100	97757958;97763713	ES	ENSMUST00000231560.2	novel	0.80	2	0.5	2	1;0	y	0.00	0	6.0	0	10;2	n	0.18	1	4.5	1	9;0	n	0.29	1	2.5	1	3;2	n	0.17	1	5.0	1	10;0	n	0.00	0	4.0	0	7;1	n	0.00	0	1.5	0	2;1	n	0.17	2	9.5	2	18;1	y	0.00	0	4.0	0	8;0	n	0.40	1	1.5	1	3;0	n	0.00	0	3.0	0	5;1	n	0.29	1	2.5	1	5;0	n	ENSMUSG00000046962.17	Zbtb21	chr16	protein_coding	zinc finger and BTB domain containing 21
novel_NIR_8038	chr16	97758100	97762899	-	97758100	97763614	A5SS	ENSMUST00000113734.9	novel	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.10	1	9	1	9	n	0.60	3	2	3	2	y	0.50	6	6	6	6	y	0.12	1	7	1	7	n	0.50	2	2	2	2	y	0.46	6	7	6	7	y	0.50	1	1	1	1	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000046962.17	Zbtb21	chr16	protein_coding	zinc finger and BTB domain containing 21
novel_NIR_8039	chr16	97758100	97762899	-	97758100	97763713	A5SS	ENSMUST00000231560.2	novel	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.60	3	2	3	2	y	1.00	6	0	6	0	y	0.50	1	1	1	1	n	0.67	2	1	2	1	y	0.86	6	1	6	1	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000046962.17	Zbtb21	chr16	protein_coding	zinc finger and BTB domain containing 21
novel_NIR_8040	chr16	97796343	97798459	-	97796343	97798126	5pMXE	ENSMUST00000183627.2	novel	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000097874.4	C030010L15Rik	chr16	lncRNA	RIKEN cDNA C030010L15 gene
novel_NIR_8041	chr16	97796343	97798459	-	97796343	97798448	A5SS	ENSMUST00000181465.3	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000097874.4	C030010L15Rik	chr16	lncRNA	RIKEN cDNA C030010L15 gene
novel_NIR_8042	chr17	11059395	11286016	+	11059376	11286016	A5SS	ENSMUST00000066658.13	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.67	2	1	2	1	y	0.00	0	6	0	6	n	0.00	0	1	0	1	n	ENSMUSG00000023826.17	Prkn	chr17	protein_coding	parkin RBR E3 ubiquitin protein ligase
novel_NIR_8043	chr17	11653520	11661080	+	11653520	11711566	A3SS	ENSMUST00000066658.13	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.29	2	5	2	5	y	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000023826.17	Prkn	chr17	protein_coding	parkin RBR E3 ubiquitin protein ligase
novel_NIR_8044	chr17	11653520	11661080	+	11653520	11854197	A3SS	ENSMUST00000233294.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023826.17	Prkn	chr17	protein_coding	parkin RBR E3 ubiquitin protein ligase
novel_NIR_8045	chr17	11834706	11854197	+	11286179	11854197	A5SS	ENSMUST00000233436.2	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000023826.17	Prkn	chr17	protein_coding	parkin RBR E3 ubiquitin protein ligase
novel_NIR_8046	chr17	11834706	11854197	+	11653520	11854197	A5SS	ENSMUST00000233294.2	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000023826.17	Prkn	chr17	protein_coding	parkin RBR E3 ubiquitin protein ligase
novel_NIR_8047	chr17	11834706	11854197	+	11711681	11854197	A5SS	ENSMUST00000191124.7	novel	0.67	4	2	4	2	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.80	4	1	4	1	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.86	6	1	6	1	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000023826.17	Prkn	chr17	protein_coding	parkin RBR E3 ubiquitin protein ligase
novel_NIR_8048	chr17	12073763	12142201	+	12073763	12085553	3pMXE	ENSMUST00000179624.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000023826.17	Prkn	chr17	protein_coding	parkin RBR E3 ubiquitin protein ligase
novel_NIR_8049	chr17	12073763	12142201	+	12073763	12222932	A3SS	ENSMUST00000191124.7	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000023826.17	Prkn	chr17	protein_coding	parkin RBR E3 ubiquitin protein ligase
novel_NIR_8050	chr17	12722509	12725798	-	12683447	12725798	A3SS	ENSMUST00000233535.2	novel	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.60	3	2	3	2	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	ENSMUSG00000023828.4	Slc22a3	chr17	protein_coding	solute carrier family 22 (organic cation transporter), member 3
novel_NIR_8051	chr17	12871371	12874332	-	12871371	12871570	5pMXE	ENSMUST00000233601.2	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	ENSMUSG00000023829.10	Slc22a1	chr17	protein_coding	solute carrier family 22 (organic cation transporter), member 1
novel_NIR_8052	chr17	12871371	12878433	-	12871371	12871570	5pMXE	ENSMUST00000233601.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.50	1	1	1	1	n	ENSMUSG00000023829.10	Slc22a1	chr17	protein_coding	solute carrier family 22 (organic cation transporter), member 1
novel_NIR_8053	chr17	12885666	12885816	-	12885666	12894133	A5SS	ENSMUST00000233691.2	novel	0.20	1	4	1	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.50	2	2	2	2	y	ENSMUSG00000023829.10	Slc22a1	chr17	protein_coding	solute carrier family 22 (organic cation transporter), member 1
novel_NIR_8054	chr17	12885666	12893520	-	12885666	12894133	A5SS	ENSMUST00000233691.2	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.60	3	2	3	2	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	ENSMUSG00000023829.10	Slc22a1	chr17	protein_coding	solute carrier family 22 (organic cation transporter), member 1
novel_NIR_8055	chr17	12893698	12894133	-	12885666	12894133	A3SS	ENSMUST00000233691.2	novel	0.43	3	4	3	4	y	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.67	6	3	6	3	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.33	1	2	1	2	n	ENSMUSG00000023829.10	Slc22a1	chr17	protein_coding	solute carrier family 22 (organic cation transporter), member 1
novel_NIR_8056	chr17	12929289	12929524	-	12928461	12929524	A3SS	ENSMUST00000024599.14	novel	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.05	1	21	1	21	n	0.00	0	6	0	6	n	0.00	0	23	0	23	n	0.00	0	17	0	17	n	0.00	0	8	0	8	n	0.17	3	15	3	15	y	0.20	1	4	1	4	n	0.00	0	20	0	20	n	ENSMUSG00000023830.15	Igf2r	chr17	protein_coding	insulin-like growth factor 2 receptor
novel_NIR_8057	chr17	13072276	13073189	-	13065299	13073189	A3SS	ENSMUST00000167152.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000068037.12	Mas1	chr17	protein_coding	MAS1 oncogene
novel_NIR_8058	chr17	13072276	13073189	-	13067007	13073189	A3SS	ENSMUST00000089015.10	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000068037.12	Mas1	chr17	protein_coding	MAS1 oncogene
novel_NIR_8059	chr17	13111502	13111646	-	13111260	13111646	A3SS	ENSMUST00000233474.2	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.15	2	11	2	11	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000073460.6	Pnldc1	chr17	protein_coding	poly(A)-specific ribonuclease (PARN)-like domain containing 1
novel_NIR_8060	chr17	13111710	13112108	-	13111710	13113247	A5SS	ENSMUST00000233474.2	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.17	2	10	2	10	y	0.00	0	6	0	6	n	0.00	0	1	0	1	n	ENSMUSG00000073460.6	Pnldc1	chr17	protein_coding	poly(A)-specific ribonuclease (PARN)-like domain containing 1
novel_NIR_8061	chr17	13111710	13112108	-	13111710	13114399	A5SS	ENSMUST00000233189.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000073460.6	Pnldc1	chr17	protein_coding	poly(A)-specific ribonuclease (PARN)-like domain containing 1
novel_NIR_8062	chr17	13132888	13134351	-	13132888	13134444	A5SS	ENSMUST00000159765.2	novel	0.60	3	2	3	2	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000057388.10	Mrpl18	chr17	protein_coding	mitochondrial ribosomal protein L18
novel_NIR_8063	chr17	13134711	13135282	-	13134711	13134791	5pMXE	ENSMUST00000162781.8	novel	1.00	2	0	2	0	y	0.33	2	4	2	4	y	0.67	2	1	2	1	y	0.68	15	7	15	7	y	1.00	19	0	19	0	y	1.00	1	0	1	0	n	0.85	11	2	11	2	y	0.75	3	1	3	1	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.44	4	5	4	5	y	ENSMUSG00000057388.10	Mrpl18	chr17	protein_coding	mitochondrial ribosomal protein L18
novel_NIR_8064	chr17	13134711	13135282	-	13134711	13135006	5pMXE	ENSMUST00000162928.2	novel	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	15	0	15	0	y	1.00	19	0	19	0	y	1.00	1	0	1	0	n	1.00	11	0	11	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000057388.10	Mrpl18	chr17	protein_coding	mitochondrial ribosomal protein L18
novel_NIR_8065	chr17	13134711	13136864	-	13134711	13134791	5pMXE	ENSMUST00000162781.8	novel	1.00	67	0	67	0	y	0.92	45	4	45	4	y	0.99	139	1	139	1	y	0.88	52	7	52	7	y	1.00	107	0	107	0	y	1.00	53	0	53	0	y	0.96	54	2	54	2	y	0.97	30	1	30	1	y	1.00	41	0	41	0	y	1.00	62	0	62	0	y	0.93	42	3	42	3	y	0.93	66	5	66	5	y	ENSMUSG00000057388.10	Mrpl18	chr17	protein_coding	mitochondrial ribosomal protein L18
novel_NIR_8066	chr17	13134711	13136864	-	13134711	13134834	5pMXE	ENSMUST00000079121.4	novel	0.33	67	138	67	138	y	0.26	45	127	45	127	y	0.58	139	102	139	102	y	0.26	52	151	52	151	y	0.36	107	188	107	188	y	0.42	53	74	53	74	y	0.22	54	188	54	188	y	0.33	30	60	30	60	y	0.25	41	125	41	125	y	0.21	62	239	62	239	y	0.22	42	147	42	147	y	0.31	66	150	66	150	y	ENSMUSG00000057388.10	Mrpl18	chr17	protein_coding	mitochondrial ribosomal protein L18
novel_NIR_8067	chr17	13134711	13136864	-	13134711	13135006	5pMXE	ENSMUST00000162928.2	novel	1.00	67	0	67	0	y	1.00	45	0	45	0	y	1.00	139	0	139	0	y	1.00	52	0	52	0	y	1.00	107	0	107	0	y	1.00	53	0	53	0	y	1.00	54	0	54	0	y	1.00	30	0	30	0	y	1.00	41	0	41	0	y	1.00	62	0	62	0	y	1.00	42	0	42	0	y	1.00	66	0	66	0	y	ENSMUSG00000057388.10	Mrpl18	chr17	protein_coding	mitochondrial ribosomal protein L18
novel_NIR_8068	chr17	13167544	13167928	-	13167544	13171139	A5SS	ENSMUST00000007005.14	novel	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.11	2	17	2	17	n	0.00	0	12	0	12	n	0.00	0	21	0	21	n	0.24	4	13	4	13	y	0.00	0	17	0	17	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.00	0	26	0	26	n	0.00	0	18	0	18	n	ENSMUSG00000023832.15	Acat2	chr17	protein_coding	acetyl-Coenzyme A acetyltransferase 2
novel_NIR_8069	chr17	13186938	13194183	-	13193995	13194183	3pMXE	ENSMUST00000159104.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	3	0	3	0	y	1.00	2	0	2	0	y	ENSMUSG00000060475.14	Wtap	chr17	protein_coding	Wilms tumour 1-associating protein
novel_NIR_8070	chr17	13188400	13194183	-	13193995	13194183	3pMXE	ENSMUST00000159104.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000060475.14	Wtap	chr17	protein_coding	Wilms tumour 1-associating protein
novel_NIR_8071	chr17	13193966	13194183	-	13193995	13194183	A3SS	ENSMUST00000159104.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.67	2	1	2	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000060475.14	Wtap	chr17	protein_coding	Wilms tumour 1-associating protein
novel_NIR_8072	chr17	13204840	13207584	-	13204840	13212950	A5SS	ENSMUST00000233867.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000060475.14	Wtap	chr17	protein_coding	Wilms tumour 1-associating protein
novel_NIR_8073	chr17	13227744	13229407	+	13227320	13229407	A5SS	ENSMUST00000233897.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000006818.6	Sod2	chr17	protein_coding	superoxide dismutase 2, mitochondrial
novel_NIR_8074	chr17	13229228	13229407	+	13227320	13229407	A5SS	ENSMUST00000233897.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	31	0	31	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	17	0	17	0	y	1.00	1	0	1	0	n	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000006818.6	Sod2	chr17	protein_coding	superoxide dismutase 2, mitochondrial
novel_NIR_8075	chr17	13232499	13233887	+	13232499	13253767	A3SS	ENSMUST00000232726.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.17	2	10	2	10	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000006818.6	Sod2	chr17	protein_coding	superoxide dismutase 2, mitochondrial
novel_NIR_8076	chr17	13344877	13641498	-	13344877	13350496	5pMXE	ENSMUST00000084966.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000067049.9	Unc93a	chr17	protein_coding	unc-93 homolog A
novel_NIR_8077	chr17	13937895	13981548	-	13774354	13981548	A3SS	ENSMUST00000135850.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000117063.2	Gm49936	chr17	lncRNA	predicted gene, 49936
novel_NIR_8078	chr17	13937895	13981548	-	13937895;13948284	13948184;13981548	ES	ENSMUST00000143162.8	novel	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	0.00	0	2.5	0	4;1	n	0.00	0	3.0	0	1;5	n	0.00	0	0.5	0	0;1	n	0.67	2	1.0	2	2;0	y	0.00	0	3.5	0	4;3	n	0.00	0	3.0	0	4;2	n	0.00	0	0.5	0	0;1	n	0.00	0	1.0	0	0;2	n	-	-	-	-	-	-	0.00	0	2.5	0	3;2	n	ENSMUSG00000038347.16	Tcte2	chr17	protein_coding	t-complex-associated testis expressed 2
novel_NIR_8079	chr17	13937895	13981548	-	13948284	13981548	A3SS&ES	ENSMUST00000053376.12	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000038347.16	Tcte2	chr17	protein_coding	t-complex-associated testis expressed 2
novel_NIR_8080	chr17	14109239	14116356	+	14109239	14111225	A3SS&ES	ENSMUST00000137708.8	novel	0.33	1	2	1	2	n	0.89	8	1	8	1	y	0.88	14	2	14	2	y	0.75	6	2	6	2	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	0.50	2	2	2	2	y	0.89	8	1	8	1	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.83	5	1	5	1	y	ENSMUSG00000068036.17	Afdn	chr17	protein_coding	afadin, adherens junction formation factor
novel_NIR_8081	chr17	14423489	14431743	+	14424062	14431743	5pMXE	ENSMUST00000232962.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000117185.2	Gm34510	chr17	lncRNA	predicted gene, 34510
novel_NIR_8082	chr17	15159842	15163072	-	15159842	15163197	A5SS	ENSMUST00000228221.2	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.60	6	4	6	4	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	ENSMUSG00000046991.13	Wdr27	chr17	protein_coding	WD repeat domain 27
novel_NIR_8083	chr17	15159842	15163072	-	15159842	15163359	A5SS	ENSMUST00000228869.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.86	6	1	6	1	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000046991.13	Wdr27	chr17	protein_coding	WD repeat domain 27
novel_NIR_8084	chr17	15159842	15163821	-	15159842	15163197	5pMXE	ENSMUST00000228221.2	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.67	6	3	6	3	y	0.20	1	4	1	4	n	0.00	0	8	0	8	n	0.17	1	5	1	5	n	ENSMUSG00000046991.13	Wdr27	chr17	protein_coding	WD repeat domain 27
novel_NIR_8085	chr17	15159842	15163821	-	15159842	15163359	5pMXE	ENSMUST00000228869.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.75	6	2	6	2	y	0.50	1	1	1	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000046991.13	Wdr27	chr17	protein_coding	WD repeat domain 27
novel_NIR_8086	chr17	15176323	15176996	-	15176329	15176996	A3SS	ENSMUST00000024657.12	novel	0.00	0	42	0	42	n	0.10	4	37	4	37	n	0.06	6	98	6	98	n	0.05	2	36	2	36	n	0.06	4	63	4	63	n	0.00	0	25	0	25	n	0.17	9	43	9	43	y	0.05	2	41	2	41	n	0.15	6	35	6	35	y	0.02	1	50	1	50	n	0.13	5	33	5	33	n	0.12	7	52	7	52	n	ENSMUSG00000023883.14	Phf10	chr17	protein_coding	PHD finger protein 10
novel_NIR_8087	chr17	15206829	15206980	+	15206172	15206980	A5SS	ENSMUST00000061688.11	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.83	10	2	10	2	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000116953.2	9030025P20Rik	chr17	protein_coding	RIKEN cDNA 9030025P20 gene
novel_NIR_8088	chr17	15642666	15643299	-	15642666	15643508	A5SS	ENSMUST00000231947.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.29	2	5	2	5	y	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000116718.2	Gm49668	chr17	lncRNA	predicted gene, 49668
novel_NIR_8089	chr17	15642666	15644546	-	15642666	15643508	A5SS	ENSMUST00000231947.2	novel	1.00	10	0	10	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.38	3	5	3	5	y	0.00	0	1	0	1	n	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.57	4	3	4	3	y	0.67	6	3	6	3	y	0.62	5	3	5	3	y	0.00	0	3	0	3	n	ENSMUSG00000116718.2	Gm49668	chr17	lncRNA	predicted gene, 49668
novel_NIR_8090	chr17	15642666	15644546	-	15643583	15644546	A3SS&ES	ENSMUST00000231577.2	novel	0.77	10	3	10	3	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.11	1	8	1	8	n	0.60	3	2	3	2	y	0.00	0	1	0	1	n	0.12	1	7	1	7	n	0.00	0	3	0	3	n	0.44	4	5	4	5	y	0.67	6	3	6	3	y	1.00	5	0	5	0	y	0.00	0	4	0	4	n	ENSMUSG00000116718.2	Gm49668	chr17	lncRNA	predicted gene, 49668
novel_NIR_8091	chr17	15642679	15644546	-	15642679;15643583	15643508;15644546	ES	ENSMUST00000231577.2	novel	0.00	0	2.0	0	1;3	n	0.00	0	1.0	0	0;2	n	-	-	-	-	-	-	0.33	2	4.0	2	0;8	y	0.00	0	2.0	0	2;2	n	0.00	0	1.0	0	1;1	n	0.46	3	3.5	3	0;7	y	0.40	1	1.5	1	0;3	n	0.17	1	5.0	1	5;5	n	0.00	0	4.0	0	5;3	n	0.00	0	0.5	0	1;0	n	0.25	1	3.0	1	2;4	n	ENSMUSG00000116718.2	Gm49668	chr17	lncRNA	predicted gene, 49668
novel_NIR_8092	chr17	15643583	15652002	-	15643583;15644705	15644546;15652002	ES	ENSMUST00000231577.2	novel	0.33	2	4.0	2	3;5	y	0.00	0	4.0	0	2;6	n	-	-	-	-	-	-	0.20	2	8.0	2	8;8	y	0.44	6	7.5	6	2;13	y	0.00	0	2.0	0	1;3	n	0.00	0	8.0	0	7;9	n	0.00	0	3.0	0	3;3	n	0.00	0	8.5	0	5;12	n	0.35	3	5.5	3	3;8	y	0.00	0	6.0	0	0;12	n	0.00	0	6.0	0	4;8	n	ENSMUSG00000116718.2	Gm49668	chr17	lncRNA	predicted gene, 49668
novel_NIR_8093	chr17	15643583	15652002	-	15644705	15652002	A3SS	ENSMUST00000231947.2	novel	0.29	2	5	2	5	y	0.00	0	6	0	6	n	-	-	-	-	-	-	0.20	2	8	2	8	y	0.32	6	13	6	13	y	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.27	3	8	3	8	y	0.00	0	12	0	12	n	0.00	0	8	0	8	n	ENSMUSG00000116718.2	Gm49668	chr17	lncRNA	predicted gene, 49668
novel_NIR_8094	chr17	15651825	15652002	-	15644705	15652002	A3SS	ENSMUST00000231577.2	novel	0.44	4	5	4	5	y	0.00	0	6	0	6	n	-	-	-	-	-	-	0.43	6	8	6	8	y	0.46	11	13	11	13	y	0.00	0	3	0	3	n	0.40	6	9	6	9	y	0.40	2	3	2	3	y	0.43	9	12	9	12	y	0.60	12	8	12	8	y	0.50	12	12	12	12	y	0.33	4	8	4	8	y	ENSMUSG00000116718.2	Gm49668	chr17	lncRNA	predicted gene, 49668
novel_NIR_8095	chr17	15651890	15652032	+	15651890	15652029	A3SS	ENSMUST00000055352.8	novel	0.03	2	56	2	56	n	0.07	5	63	5	63	n	0.06	3	45	3	45	n	0.00	0	27	0	27	n	0.11	6	49	6	49	n	0.19	5	22	5	22	y	0.15	8	47	8	47	y	0.09	3	30	3	30	n	0.06	3	49	3	49	n	0.06	3	45	3	45	n	0.10	6	53	6	53	n	0.03	1	33	1	33	n	ENSMUSG00000014763.9	Fam120b	chr17	protein_coding	family with sequence similarity 120, member B
novel_NIR_8096	chr17	15652103	15652380	-	15652103	15655035	A5SS	ENSMUST00000231947.2	novel	0.16	6	31	6	31	y	0.21	6	22	6	22	y	0.20	1	4	1	4	n	0.21	10	37	10	37	y	0.22	10	35	10	35	y	0.17	2	10	2	10	y	0.28	10	26	10	26	y	0.38	9	15	9	15	y	0.21	9	34	9	34	y	0.23	15	49	15	49	y	0.10	3	27	3	27	n	0.24	12	38	12	38	y	ENSMUSG00000116718.2	Gm49668	chr17	lncRNA	predicted gene, 49668
novel_NIR_8097	chr17	15652103	15652380	-	15652103	15655125	A5SS	ENSMUST00000231577.2	novel	0.86	6	1	6	1	y	0.75	6	2	6	2	y	1.00	1	0	1	0	n	0.48	10	11	10	11	y	0.67	10	5	10	5	y	0.40	2	3	2	3	y	0.91	10	1	10	1	y	1.00	9	0	9	0	y	0.56	9	7	9	7	y	0.71	15	6	15	6	y	0.50	3	3	3	3	y	0.71	12	5	12	5	y	ENSMUSG00000116718.2	Gm49668	chr17	lncRNA	predicted gene, 49668
novel_NIR_8098	chr17	15652103	15653277	-	15652103	15655125	A5SS	ENSMUST00000231577.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	11	0	11	n	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	7	0	7	n	0.40	4	6	4	6	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000116718.2	Gm49668	chr17	lncRNA	predicted gene, 49668
novel_NIR_8099	chr17	15714785	15718235	-	15714785	15719495	A5SS	ENSMUST00000232500.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000014769.11	Psmb1	chr17	protein_coding	proteasome (prosome, macropain) subunit, beta type 1
novel_NIR_8100	chr17	15742283	15743065	-	15740626	15743065	A3SS	ENSMUST00000154293.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.80	4	1	4	1	y	-	-	-	-	-	-	ENSMUSG00000014771.14	Pdcd2	chr17	protein_coding	programmed cell death 2
novel_NIR_8101	chr17	15765622	15774950	-	15765622;15773807	15773614;15774950	ES	ENSMUST00000167994.10	novel	0.00	0	14.0	0	16;12	n	0.12	1	7.0	1	7;7	n	0.00	0	16.5	0	19;14	n	0.00	0	13.5	0	18;9	n	0.00	0	14.5	0	15;14	n	0.15	1	5.5	1	6;5	n	0.00	0	11.5	0	15;8	n	0.00	0	8.5	0	13;4	n	0.00	0	14.0	0	19;9	n	0.14	2	12.0	2	13;11	n	0.09	1	10.0	1	15;5	n	0.21	4	15.0	4	13;17	y	ENSMUSG00000051977.17	Prdm9	chr17	protein_coding	PR domain containing 9
novel_NIR_8102	chr17	15765622	15774950	-	15773807	15774950	3pMXE	ENSMUST00000147532.8	novel	0.00	0	12	0	12	n	0.12	1	7	1	7	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.17	1	5	1	5	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.15	2	11	2	11	y	0.17	1	5	1	5	n	0.19	4	17	4	17	y	ENSMUSG00000051977.17	Prdm9	chr17	protein_coding	PR domain containing 9
novel_NIR_8103	chr17	17171970	17190221	+	17171970	17191162	A3SS	ENSMUST00000232328.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	5	0	5	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000060149.8	BC002059	chr17	lncRNA	cDNA sequence BC002059
novel_NIR_8104	chr17	17171970	17190221	+	17171970	17191433	A3SS	ENSMUST00000190415.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000060149.8	BC002059	chr17	lncRNA	cDNA sequence BC002059
novel_NIR_8105	chr17	17191493	17199990	+	17191493	17192687	3pMXE	ENSMUST00000190415.2	novel	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.50	2	2	2	2	y	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.18	2	9	2	9	y	0.00	0	6	0	6	n	ENSMUSG00000060149.8	BC002059	chr17	lncRNA	cDNA sequence BC002059
novel_NIR_8106	chr17	17514851	17536706	+	17514851;17536466	17536340;17536706	ES	ENSMUST00000186431.7	novel	0.00	0	4.5	0	2;7	n	0.00	0	0.5	0	0;1	n	0.00	0	4.0	0	5;3	n	0.00	0	3.0	0	3;3	n	0.00	0	3.0	0	2;4	n	0.00	0	2.0	0	3;1	n	0.00	0	6.5	0	7;6	n	0.00	0	1.5	0	1;2	n	0.00	0	1.5	0	1;2	n	0.00	0	4.0	0	4;4	n	0.00	0	1.5	0	1;2	n	0.40	2	3.0	2	3;3	y	ENSMUSG00000072761.11	Gm6712	chr17	lncRNA	predicted gene 6712
novel_NIR_8107	chr17	17514851	17536706	+	17536466	17536706	5pMXE	ENSMUST00000105311.4	novel	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	ENSMUSG00000072761.11	Gm6712	chr17	lncRNA	predicted gene 6712
novel_NIR_8108	chr17	21232034	21240340	+	21232034	21232669	3pMXE	ENSMUST00000231679.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000067942.7	Zfp160	chr17	protein_coding	zinc finger protein 160
novel_NIR_8109	chr17	21232034	21240340	+	21232034	21239091	A3SS&ES	ENSMUST00000231482.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000067942.7	Zfp160	chr17	protein_coding	zinc finger protein 160
novel_NIR_8110	chr17	21643579	21647594	+	21643579	21647999	A3SS	ENSMUST00000167749.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	ENSMUSG00000023882.16	Zfp54	chr17	protein_coding	zinc finger protein 54
novel_NIR_8111	chr17	21643579	21647594	+	21643823	21647594	A5SS	ENSMUST00000165230.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	4	0	4	n	1.00	3	0	3	0	y	0.33	1	2	1	2	n	ENSMUSG00000023882.16	Zfp54	chr17	protein_coding	zinc finger protein 54
novel_NIR_8112	chr17	21670969	21672699	+	21670683	21672699	A5SS	ENSMUST00000039577.8	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.43	3	4	3	4	y	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	ENSMUSG00000023892.9	Zfp51	chr17	protein_coding	zinc finger protein 51
novel_NIR_8113	chr17	21700044	21711488	+	21709527	21711488	5pMXE	ENSMUST00000233158.2	novel	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.15	3	17	3	17	y	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	17	0	17	n	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.11	1	8	1	8	n	ENSMUSG00000057409.8	Zfp53	chr17	protein_coding	zinc finger protein 53
novel_NIR_8114	chr17	21711578	21742854	+	21737551	21742854	5pMXE	ENSMUST00000233302.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000117037.2	Gm50433	chr17	transcribed_processed_pseudogene	predicted gene, 50433
novel_NIR_8115	chr17	21725369	21727602	+	21725369	21728249	A3SS	ENSMUST00000233158.2	novel	0.33	7	14	7	14	y	0.36	4	7	4	7	y	0.29	4	10	4	10	y	0.46	6	7	6	7	y	0.08	1	12	1	12	n	0.11	1	8	1	8	n	0.38	5	8	5	8	y	0.36	4	7	4	7	y	0.69	11	5	11	5	y	0.38	5	8	5	8	y	0.42	5	7	5	7	y	0.38	3	5	3	5	y	ENSMUSG00000057409.8	Zfp53	chr17	protein_coding	zinc finger protein 53
novel_NIR_8116	chr17	21787507	21789278	+	21787507	21789311	A3SS	ENSMUST00000088787.7	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.33	2	4	2	4	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.17	1	5	1	5	n	0.00	0	4	0	4	n	ENSMUSG00000067931.7	Zfp948	chr17	protein_coding	zinc finger protein 948
novel_NIR_8117	chr17	21794218	21797559	+	21794218	21803292	A3SS	ENSMUST00000088787.7	novel	0.25	2	6	2	6	y	0.00	0	6	0	6	n	0.17	2	10	2	10	y	0.33	2	4	2	4	y	0.12	2	15	2	15	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	ENSMUSG00000067931.7	Zfp948	chr17	protein_coding	zinc finger protein 948
novel_NIR_8118	chr17	21869694	21871187	+	21849912	21871187	A5SS	ENSMUST00000232793.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000117013.2	Gm30531	chr17	transcribed_processed_pseudogene	predicted gene, 30531
novel_NIR_8119	chr17	21869694	21871187	+	21869793	21871187	A5SS	ENSMUST00000232827.2	novel	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.17	1	5	1	5	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	1.00	2	0	2	0	y	0.00	0	4	0	4	n	0.17	1	5	1	5	n	ENSMUSG00000035868.10	Zfp983	chr17	protein_coding	zinc finger protein 983
novel_NIR_8120	chr17	21869793;21870818	21870723;21871187	+	21869793	21871187	cassetteExon	ENSMUST00000232827.2	novel	0.82	9.0	2	9;9	2	y	0.60	9.0	6	15;3	6	y	0.78	7.0	2	9;5	2	y	1.00	5.0	0	8;2	0	y	0.74	14.0	5	14;14	5	y	1.00	1.5	0	2;1	0	n	0.73	13.5	5	14;13	5	y	0.87	6.5	1	12;1	1	n	0.79	11.5	3	14;9	3	y	1.00	11.5	0	11;12	0	y	0.80	16.0	4	17;15	4	y	0.63	8.5	5	17;0	5	n	ENSMUSG00000035868.10	Zfp983	chr17	protein_coding	zinc finger protein 983
novel_NIR_8121	chr17	21869793;21870865	21870723;21871187	+	21869793	21871187	cassetteExon	ENSMUST00000232827.2	novel	0.75	6.0	2	9;3	2	y	0.57	8.0	6	15;1	6	n	0.73	5.5	2	9;2	2	y	1.00	7.0	0	8;6	0	y	0.62	8.0	5	14;2	5	y	1.00	3.0	0	2;4	0	y	0.58	7.0	5	14;0	5	n	0.88	7.5	1	12;3	1	y	0.70	7.0	3	14;0	3	n	1.00	7.5	0	11;4	0	y	0.72	10.5	4	17;4	4	y	0.66	9.5	5	17;2	5	y	ENSMUSG00000035868.10	Zfp983	chr17	protein_coding	zinc finger protein 983
novel_NIR_8122	chr17	21870818	21871187	+	21849912	21871187	A5SS	ENSMUST00000232793.2	novel	1.00	9	0	9	0	y	1.00	3	0	3	0	y	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	14	0	14	0	y	1.00	1	0	1	0	n	1.00	13	0	13	0	y	1.00	1	0	1	0	n	1.00	9	0	9	0	y	1.00	12	0	12	0	y	1.00	15	0	15	0	y	-	-	-	-	-	-	ENSMUSG00000117013.2	Gm30531	chr17	transcribed_processed_pseudogene	predicted gene, 30531
novel_NIR_8123	chr17	21870865	21871187	+	21849912	21871187	A5SS	ENSMUST00000232793.2	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	6	0	6	0	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	ENSMUSG00000117013.2	Gm30531	chr17	transcribed_processed_pseudogene	predicted gene, 30531
novel_NIR_8124	chr17	21871265	21875122	+	21871265	21875095	A3SS	ENSMUST00000232827.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035868.10	Zfp983	chr17	protein_coding	zinc finger protein 983
novel_NIR_8125	chr17	21877955	21879021	+	21877955	21880231	A3SS	ENSMUST00000232827.2	novel	0.40	8	12	8	12	y	0.56	10	8	10	8	y	0.62	5	3	5	3	y	0.53	9	8	9	8	y	0.38	6	10	6	10	y	1.00	1	0	1	0	n	0.62	10	6	10	6	y	0.50	4	4	4	4	y	0.50	6	6	6	6	y	0.57	13	10	13	10	y	0.57	8	6	8	6	y	0.29	4	10	4	10	y	ENSMUSG00000035868.10	Zfp983	chr17	protein_coding	zinc finger protein 983
novel_NIR_8126	chr17	21927703	21928202	+	21927703	21928186	A3SS	ENSMUST00000073312.7	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.00	0	10	0	10	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	ENSMUSG00000067928.7	Zfp760	chr17	protein_coding	zinc finger protein 760
novel_NIR_8127	chr17	22042872	22064625	-	22042872;22059695	22059586;22064625	ES	ENSMUST00000232918.2	novel	-	-	-	-	-	-	0.00	0	1.0	0	0;2	n	0.46	3	3.5	3	0;7	y	0.18	1	4.5	1	3;6	n	0.62	4	2.5	4	1;4	y	0.00	0	2.5	0	1;4	n	0.00	0	1.0	0	0;2	n	0.00	0	1.5	0	0;3	n	0.00	0	2.0	0	2;2	n	0.00	0	1.5	0	2;1	n	0.00	0	1.0	0	0;2	n	0.50	1	1.0	1	0;2	n	ENSMUSG00000069743.6	Zfp820	chr17	protein_coding	zinc finger protein 820
novel_NIR_8128	chr17	22042872	22064625	-	22042872;22059695	22059605;22064625	ES	ENSMUST00000084141.6	novel	-	-	-	-	-	-	0.00	0	2.5	0	3;2	n	0.38	3	5.0	3	3;7	y	0.25	1	3.0	1	0;6	n	0.57	4	3.0	4	2;4	y	0.00	0	3.0	0	2;4	n	0.00	0	2.0	0	2;2	n	0.00	0	3.5	0	4;3	n	0.00	0	1.0	0	0;2	n	0.00	0	1.0	0	1;1	n	0.00	0	1.5	0	1;2	n	0.33	1	2.0	1	2;2	n	ENSMUSG00000069743.6	Zfp820	chr17	protein_coding	zinc finger protein 820
novel_NIR_8129	chr17	22059249	22059605	-	22042872	22059605	A3SS	ENSMUST00000084141.6	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000069743.6	Zfp820	chr17	protein_coding	zinc finger protein 820
novel_NIR_8130	chr17	22063552	22064625	-	22059695	22064625	A3SS	ENSMUST00000084141.6	novel	-	-	-	-	-	-	0.33	1	2	1	2	n	0.22	2	7	2	7	y	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000069743.6	Zfp820	chr17	protein_coding	zinc finger protein 820
novel_NIR_8131	chr17	22110769	22111562	-	22110819	22111562	A3SS	ENSMUST00000189719.2	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	7	0	7	n	1.00	3	0	3	0	y	ENSMUSG00000078546.9	Zfp995	chr17	protein_coding	zinc finger protein 995
novel_NIR_8132	chr17	22122816	22123523	-	22122816	22123511	A5SS	ENSMUST00000186313.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000078546.9	Zfp995	chr17	protein_coding	zinc finger protein 995
novel_NIR_8133	chr17	22152055	22160707	-	22152094	22160707	A3SS	ENSMUST00000091879.12	novel	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.19	3	13	3	13	y	0.00	0	14	0	14	n	0.00	0	20	0	20	n	0.00	0	9	0	9	n	0.14	1	6	1	6	n	0.00	0	3	0	3	n	0.07	1	14	1	14	n	0.06	1	15	1	15	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	ENSMUSG00000071267.12	Zfp942	chr17	protein_coding	zinc finger protein 942
novel_NIR_8134	chr17	22152094	22160758	-	22152094	22160707	A5SS	ENSMUST00000091879.12	novel	0.00	0	13	0	13	n	0.17	1	5	1	5	n	0.00	0	13	0	13	n	0.07	1	14	1	14	n	0.00	0	20	0	20	n	0.00	0	9	0	9	n	0.25	2	6	2	6	y	0.00	0	3	0	3	n	0.00	0	14	0	14	n	0.00	0	15	0	15	n	0.12	1	7	1	7	n	0.22	4	14	4	14	y	ENSMUSG00000071267.12	Zfp942	chr17	protein_coding	zinc finger protein 942
novel_NIR_8135	chr17	22152094	22172869	-	22152094;22160831	22160707;22172869	ES	ENSMUST00000091879.12	novel	0.00	0	10.5	0	13;8	n	0.00	0	6.5	0	5;8	n	0.12	2	15.0	2	13;17	n	0.07	1	14.0	1	14;14	n	0.00	0	19.0	0	20;18	n	0.00	0	6.0	0	9;3	n	0.00	0	9.0	0	6;12	n	0.40	4	6.0	4	3;9	y	0.00	0	11.0	0	14;8	n	0.00	0	14.0	0	15;13	n	0.00	0	5.5	0	7;4	n	0.26	5	14.0	5	14;14	y	ENSMUSG00000071267.12	Zfp942	chr17	protein_coding	zinc finger protein 942
novel_NIR_8136	chr17	22152094	22172869	-	22160831	22172869	3pMXE	ENSMUST00000126485.2	novel	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.11	2	17	2	17	n	0.07	1	14	1	14	n	0.00	0	18	0	18	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.31	4	9	4	9	y	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.26	5	14	5	14	y	ENSMUSG00000071267.12	Zfp942	chr17	protein_coding	zinc finger protein 942
novel_NIR_8137	chr17	22172961	22181237	-	22173034	22181237	A3SS	ENSMUST00000091879.12	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.88	7	1	7	1	y	0.64	9	5	9	5	y	0.14	1	6	1	6	n	0.17	1	5	1	5	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.21	3	11	3	11	y	0.00	0	6	0	6	n	0.00	0	4	0	4	n	ENSMUSG00000071267.12	Zfp942	chr17	protein_coding	zinc finger protein 942
novel_NIR_8138	chr17	22209882	22211073	+	22209886	22211073	A5SS	ENSMUST00000055349.15	novel	0.07	1	13	1	13	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	20	0	20	n	0.00	0	15	0	15	n	0.40	2	3	2	3	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.10	1	9	1	9	n	0.00	0	16	0	16	n	0.00	0	17	0	17	n	0.00	0	15	0	15	n	ENSMUSG00000053347.16	Zfp943	chr17	protein_coding	zinc finger prtoein 943
novel_NIR_8139	chr17	22369063	22384800	-	22369063;22382316	22382168;22384800	ES	ENSMUST00000080249.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1.0	0	1;1	n	0.33	2	4.0	2	5;3	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	0.5	0	0;1	n	0.00	0	0.5	0	1;0	n	0.00	0	2.5	0	3;2	n	0.00	0	0.5	0	0;1	n	0.00	0	2.5	0	3;2	n	ENSMUSG00000063383.6	Zfp947	chr17	protein_coding	zinc finger protein 947
novel_NIR_8140	chr17	22424333	22438952	-	22424333	22442992	A5SS	ENSMUST00000179996.3	novel	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.17	1	5	1	5	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.60	3	2	3	2	y	0.43	3	4	3	4	y	0.50	2	2	2	2	n	ENSMUSG00000096433.3	Zfp994	chr17	protein_coding	zinc finger protein 994
novel_NIR_8141	chr17	22424333;22439341	22438952;22442992	-	22424333	22442992	cassetteExon	ENSMUST00000179996.3	novel	0.23	1.5	5	0;3	5	n	0.00	0.0	3	0;0	3	n	0.33	0.5	1	0;1	1	n	0.09	0.5	5	1;0	5	n	0.09	0.5	5	1;0	5	n	0.27	1.5	4	0;3	4	n	0.14	0.5	3	1;0	3	n	0.00	0.0	2	0;0	2	n	0.00	0.0	4	0;0	4	n	0.43	1.5	2	3;0	2	n	0.27	1.5	4	3;0	4	n	0.60	3.0	2	2;4	2	y	ENSMUSG00000096433.3	Zfp994	chr17	protein_coding	zinc finger protein 994
novel_NIR_8142	chr17	22424333;22439341	22439249;22442992	-	22424333	22442992	cassetteExon	ENSMUST00000179996.3	novel	0.33	2.5	5	2;3	5	y	0.00	0.0	3	0;0	3	n	0.33	0.5	1	0;1	1	n	0.00	0.0	5	0;0	5	n	0.09	0.5	5	1;0	5	n	0.27	1.5	4	0;3	4	n	0.00	0.0	3	0;0	3	n	0.00	0.0	2	0;0	2	n	0.00	0.0	4	0;0	4	n	0.00	0.0	2	0;0	2	n	0.00	0.0	4	0;0	4	n	0.56	2.5	2	1;4	2	n	ENSMUSG00000096433.3	Zfp994	chr17	protein_coding	zinc finger protein 994
novel_NIR_8143	chr17	22439341	22442992	-	22424333	22442992	A3SS	ENSMUST00000179996.3	novel	0.38	3	5	3	5	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.43	3	4	3	4	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.67	4	2	4	2	n	ENSMUSG00000096433.3	Zfp994	chr17	protein_coding	zinc finger protein 994
novel_NIR_8144	chr17	22508928	22511389	-	22508876	22511389	A3SS	ENSMUST00000233465.2	novel	0.12	1	7	1	7	n	0.00	0	7	0	7	n	0.20	2	8	2	8	y	0.00	0	6	0	6	n	0.00	0	11	0	11	n	-	-	-	-	-	-	0.17	1	5	1	5	n	0.00	0	7	0	7	n	0.20	2	8	2	8	y	0.07	1	13	1	13	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	ENSMUSG00000117284.2	Gm7072	chr17	protein_coding	predicted gene 7072
novel_NIR_8145	chr17	22509731	22511389	-	22508876	22511389	A3SS	ENSMUST00000233465.2	novel	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.11	1	8	1	8	n	0.00	0	6	0	6	n	0.15	2	11	2	11	y	1.00	1	0	1	0	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.09	1	10	1	10	n	0.00	0	10	0	10	n	ENSMUSG00000117284.2	Gm7072	chr17	protein_coding	predicted gene 7072
novel_NIR_8146	chr17	22511436	22532218	-	22511436;22528578	22528486;22532218	ES	ENSMUST00000233465.2	novel	0.00	0	7.5	0	4;11	n	0.00	0	7.0	0	7;7	n	0.00	0	7.0	0	9;5	n	0.00	0	6.0	0	4;8	n	0.00	0	14.5	0	8;21	n	0.00	0	5.0	0	3;7	n	0.11	1	8.0	1	6;10	n	0.00	0	5.5	0	6;5	n	0.00	0	8.5	0	3;14	n	0.19	3	13.0	3	12;14	y	0.00	0	9.0	0	4;14	n	0.00	0	8.5	0	8;9	n	ENSMUSG00000117284.2	Gm7072	chr17	protein_coding	predicted gene 7072
novel_NIR_8147	chr17	22528295	22528486	-	22511436	22528486	A3SS	ENSMUST00000233465.2	novel	0.43	3	4	3	4	y	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	ENSMUSG00000117284.2	Gm7072	chr17	protein_coding	predicted gene 7072
novel_NIR_8148	chr17	22528578	22531010	-	22528578	22532218	A5SS	ENSMUST00000233465.2	novel	0.15	2	11	2	11	n	0.36	4	7	4	7	y	0.44	4	5	4	5	y	0.00	0	8	0	8	n	0.22	6	21	6	21	y	0.00	0	7	0	7	n	0.09	1	10	1	10	n	0.55	6	5	6	5	y	0.07	1	14	1	14	n	0.33	7	14	7	14	n	0.07	1	14	1	14	n	0.18	2	9	2	9	y	ENSMUSG00000117284.2	Gm7072	chr17	protein_coding	predicted gene 7072
novel_NIR_8149	chr17	22528578;22531222	22531010;22532218	-	22528578	22532218	cassetteExon	ENSMUST00000233465.2	novel	0.15	2.0	11	2;2	11	y	0.22	2.0	7	4;0	7	n	0.29	2.0	5	4;0	5	n	0.06	0.5	8	0;1	8	n	0.12	3.0	21	6;0	21	n	0.00	0.0	7	0;0	7	n	0.13	1.5	10	1;2	10	n	0.38	3.0	5	6;0	5	n	0.03	0.5	14	1;0	14	n	0.22	4.0	14	7;1	14	n	0.03	0.5	14	1;0	14	n	0.10	1.0	9	2;0	9	n	ENSMUSG00000117284.2	Gm7072	chr17	protein_coding	predicted gene 7072
novel_NIR_8150	chr17	22532366	22533728	-	22532301	22533728	A3SS	ENSMUST00000233465.2	novel	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	20	0	20	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.40	2	3	2	3	y	ENSMUSG00000117284.2	Gm7072	chr17	protein_coding	predicted gene 7072
novel_NIR_8151	chr17	22562674;22574115	22574062;22577804	-	22562674	22577804	cassetteExon	ENSMUST00000115535.3	novel	0.09	2.5	26	3;2	26	n	0.00	0.0	22	0;0	22	n	0.04	1.0	25	2;0	25	n	0.00	0.0	24	0;0	24	n	0.04	1.5	40	2;1	40	n	0.10	1.0	9	1;1	9	n	0.05	1.5	26	3;0	26	n	0.00	0.0	9	0;0	9	n	0.00	0.0	16	0;0	16	n	0.15	4.0	22	4;4	22	y	0.03	0.5	19	1;0	19	n	0.02	0.5	28	0;1	28	n	ENSMUSG00000033972.10	Zfp944	chr17	protein_coding	zinc finger protein 944
novel_NIR_8152	chr17	22577896	22578421	-	22577969	22578421	A3SS	ENSMUST00000115535.3	novel	0.64	7	4	7	4	y	0.76	22	7	22	7	y	0.18	3	14	3	14	y	0.29	4	10	4	10	y	0.08	1	11	1	11	n	0.00	0	8	0	8	n	0.50	14	14	14	14	y	1.00	7	0	7	0	y	0.26	5	14	5	14	y	0.28	8	21	8	21	y	0.33	8	16	8	16	y	0.43	9	12	9	12	y	ENSMUSG00000033972.10	Zfp944	chr17	protein_coding	zinc finger protein 944
novel_NIR_8153	chr17	22580688	22585994	+	22580688	22590972	A3SS	ENSMUST00000088765.9	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.25	1	3	1	3	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	7	0	7	n	-	-	-	-	-	-	0.40	2	3	2	3	y	ENSMUSG00000044501.18	Zfp758	chr17	protein_coding	zinc finger protein 758
novel_NIR_8154	chr17	22580688	22585994	+	22580688	22591017	A3SS	ENSMUST00000121315.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.50	1	1	1	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	ENSMUSG00000044501.18	Zfp758	chr17	protein_coding	zinc finger protein 758
novel_NIR_8155	chr17	22580688	22585994	+	22580688	22592624	A3SS	ENSMUST00000149699.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.25	1	3	1	3	n	1.00	1	0	1	0	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.29	2	5	2	5	y	ENSMUSG00000044501.18	Zfp758	chr17	protein_coding	zinc finger protein 758
novel_NIR_8156	chr17	22586688	22590972	+	22580688	22590972	A5SS	ENSMUST00000088765.9	novel	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000044501.18	Zfp758	chr17	protein_coding	zinc finger protein 758
novel_NIR_8157	chr17	22663272	22664305	+	22663272	22665778	A3SS	ENSMUST00000120222.8	novel	0.00	0	19	0	19	n	0.07	1	14	1	14	n	0.17	2	10	2	10	y	0.13	2	13	2	13	n	0.00	0	29	0	29	n	0.00	0	12	0	12	n	0.00	0	19	0	19	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	20	0	20	n	0.00	0	6	0	6	n	0.07	1	14	1	14	n	ENSMUSG00000071266.14	Zfp946	chr17	protein_coding	zinc finger protein 946
novel_NIR_8158	chr17	22663272;22664370	22664305;22665778	+	22663272	22665778	cassetteExon	ENSMUST00000120222.8	novel	0.00	0.0	19	0;0	19	n	0.03	0.5	14	1;0	14	n	0.09	1.0	10	2;0	10	n	0.16	2.5	13	2;3	13	y	0.02	0.5	29	0;1	29	n	0.00	0.0	12	0;0	12	n	0.00	0.0	19	0;0	19	n	0.00	0.0	8	0;0	8	n	0.00	0.0	12	0;0	12	n	0.00	0.0	20	0;0	20	n	0.08	0.5	6	0;1	6	n	0.03	0.5	14	1;0	14	n	ENSMUSG00000071266.14	Zfp946	chr17	protein_coding	zinc finger protein 946
novel_NIR_8159	chr17	22664370	22665778	+	22647546	22665778	A5SS	ENSMUST00000141831.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.38	3	5	3	5	y	0.11	1	8	1	8	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	1	0	1	n	ENSMUSG00000071266.14	Zfp946	chr17	protein_coding	zinc finger protein 946
novel_NIR_8160	chr17	22665645	22665778	+	22647546	22665778	A5SS	ENSMUST00000141831.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	8	0	8	n	1.00	1	0	1	0	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.50	2	2	2	2	y	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000071266.14	Zfp946	chr17	protein_coding	zinc finger protein 946
novel_NIR_8161	chr17	22670133;22670750	22670685;22672433	+	22670133	22672433	cassetteExon	ENSMUST00000120222.8	novel	0.17	4.5	22	3;6	22	y	0.33	9.0	18	7;11	18	y	0.21	6.0	23	5;7	23	y	0.33	8.5	17	9;8	17	y	0.33	13.5	28	13;14	28	y	0.22	2.0	7	0;4	7	n	0.38	9.0	15	12;6	15	y	0.60	7.5	5	2;13	5	y	0.19	4.0	17	4;4	17	y	0.31	8.0	18	8;8	18	y	0.43	9.0	12	8;10	12	y	0.33	11.5	23	11;12	23	y	ENSMUSG00000071266.14	Zfp946	chr17	protein_coding	zinc finger protein 946
novel_NIR_8162	chr17	22670750	22672433	+	22670133	22672433	A5SS	ENSMUST00000120222.8	novel	0.21	6	22	6	22	n	0.38	11	18	11	18	n	0.23	7	23	7	23	n	0.32	8	17	8	17	n	0.33	14	28	14	28	n	0.36	4	7	4	7	y	0.29	6	15	6	15	n	0.72	13	5	13	5	n	0.19	4	17	4	17	n	0.31	8	18	8	18	n	0.45	10	12	10	12	n	0.34	12	23	12	23	n	ENSMUSG00000071266.14	Zfp946	chr17	protein_coding	zinc finger protein 946
novel_NIR_8163	chr17	23080539	23084221	-	23080535	23084221	A3SS	ENSMUST00000088696.13	novel	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.20	2	8	2	8	y	0.00	0	26	0	26	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	24	0	24	n	0.00	0	19	0	19	n	0.00	0	25	0	25	n	ENSMUSG00000059142.17	Zfp945	chr17	protein_coding	zinc finger protein 945
novel_NIR_8164	chr17	23080539	23084221	-	23080826	23084221	A3SS&ES	ENSMUST00000160457.10	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	15	0	15	n	ENSMUSG00000059142.17	Zfp945	chr17	protein_coding	zinc finger protein 945
novel_NIR_8165	chr17	23080826	23080912	-	23080826	23084221	A5SS	ENSMUST00000160457.10	novel	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.17	3	15	3	15	y	ENSMUSG00000059142.17	Zfp945	chr17	protein_coding	zinc finger protein 945
novel_NIR_8166	chr17	23080826	23082809	-	23080826	23084221	A5SS	ENSMUST00000160457.10	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.25	2	6	2	6	y	0.00	0	5	0	5	n	0.00	0	15	0	15	n	ENSMUSG00000059142.17	Zfp945	chr17	protein_coding	zinc finger protein 945
novel_NIR_8167	chr17	23769874	23780017	+	23769874	23782744	A3SS	ENSMUST00000233076.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000117322.2	6330415G19Rik	chr17	lncRNA	RIKEN cDNA 6330415G19 gene
novel_NIR_8168	chr17	23780634	23782740	-	23780634	23782943	A5SS	ENSMUST00000095606.5	novel	0.25	3	9	3	9	y	0.33	4	8	4	8	y	0.13	2	13	2	13	n	0.07	1	14	1	14	n	0.12	2	14	2	14	n	0.09	1	10	1	10	n	0.06	1	15	1	15	n	0.00	0	9	0	9	n	0.17	1	5	1	5	n	0.00	0	13	0	13	n	0.29	2	5	2	5	y	0.33	2	4	2	4	y	ENSMUSG00000071256.5	Zfp213	chr17	protein_coding	zinc finger protein 213
novel_NIR_8169	chr17	23892864	23892943	+	23892677	23892943	A5SS	ENSMUST00000180140.8	novel	1.00	11	0	11	0	y	0.40	4	6	4	6	y	0.92	11	1	11	1	y	0.53	9	8	9	8	y	1.00	17	0	17	0	y	1.00	2	0	2	0	y	1.00	15	0	15	0	y	1.00	1	0	1	0	n	1.00	10	0	10	0	y	0.33	9	18	9	18	y	0.33	9	18	9	18	y	1.00	11	0	11	0	y	ENSMUSG00000023904.11	Hcfc1r1	chr17	protein_coding	host cell factor C1 regulator 1 (XPO1-dependent)
novel_NIR_8170	chr17	23895597	23896070	-	23895597	23896095	A5SS	ENSMUST00000233428.2	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.60	3	2	3	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023905.16	Tnfrsf12a	chr17	protein_coding	tumor necrosis factor receptor superfamily, member 12a
novel_NIR_8171	chr17	23895645	23896301	-	23895247	23896301	A3SS	ENSMUST00000167059.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023905.16	Tnfrsf12a	chr17	protein_coding	tumor necrosis factor receptor superfamily, member 12a
novel_NIR_8172	chr17	23895645	23896301	-	23896171	23896301	A3SS&ES	ENSMUST00000233428.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023905.16	Tnfrsf12a	chr17	protein_coding	tumor necrosis factor receptor superfamily, member 12a
novel_NIR_8173	chr17	23895652	23896301	-	23895247	23896301	A3SS	ENSMUST00000167059.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023905.16	Tnfrsf12a	chr17	protein_coding	tumor necrosis factor receptor superfamily, member 12a
novel_NIR_8174	chr17	23895652	23896301	-	23896171	23896301	A3SS&ES	ENSMUST00000233428.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023905.16	Tnfrsf12a	chr17	protein_coding	tumor necrosis factor receptor superfamily, member 12a
novel_NIR_8175	chr17	23946072	23951311	+	23945615	23951311	A5SS	ENSMUST00000024701.9	novel	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	19	0	19	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	ENSMUSG00000023908.9	Pkmyt1	chr17	protein_coding	protein kinase, membrane associated tyrosine/threonine 1
novel_NIR_8176	chr17	23951798	23951907	+	23951798	23952797	A3SS	ENSMUST00000024701.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	11	0	11	n	0.40	2	3	2	3	y	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	ENSMUSG00000023908.9	Pkmyt1	chr17	protein_coding	protein kinase, membrane associated tyrosine/threonine 1
novel_NIR_8177	chr17	23955363	23955469	+	23954694	23955469	A5SS	ENSMUST00000233812.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000023908.9	Pkmyt1	chr17	protein_coding	protein kinase, membrane associated tyrosine/threonine 1
novel_NIR_8178	chr17	23955363	23955469	+	23955375	23955469	A5SS	ENSMUST00000024701.9	novel	0.00	0	9	0	9	n	0.09	1	10	1	10	n	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.00	0	19	0	19	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.18	2	9	2	9	y	0.08	1	11	1	11	n	0.00	0	9	0	9	n	0.33	1	2	1	2	n	0.50	2	2	2	2	y	ENSMUSG00000023908.9	Pkmyt1	chr17	protein_coding	protein kinase, membrane associated tyrosine/threonine 1
novel_NIR_8179	chr17	23989302	23990389	-	23982292	23990389	A3SS	ENSMUST00000086325.13	novel	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.10	1	9	1	9	n	0.00	0	6	0	6	n	0.12	2	15	2	15	n	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.30	3	7	3	7	y	0.22	4	14	4	14	y	ENSMUSG00000040097.17	Flywch1	chr17	protein_coding	FLYWCH-type zinc finger 1
novel_NIR_8180	chr17	23989302	23990389	-	23989306	23990389	A3SS	ENSMUST00000226460.2	novel	0.00	0	13	0	13	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	17	0	17	n	0.18	2	9	2	9	y	0.00	0	8	0	8	n	0.00	0	15	0	15	n	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.30	3	7	3	7	y	0.40	4	6	4	6	y	ENSMUSG00000040097.17	Flywch1	chr17	protein_coding	FLYWCH-type zinc finger 1
novel_NIR_8181	chr17	23999030	24005151	-	23999030	24004975	5pMXE	ENSMUST00000024704.10	novel	-	-	-	-	-	-	0.60	3	2	3	2	y	0.62	5	3	5	3	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.56	5	4	5	4	y	ENSMUSG00000023911.13	Flywch2	chr17	protein_coding	FLYWCH family member 2
novel_NIR_8182	chr17	24022987	24025906	+	24011485	24025906	A5SS	ENSMUST00000186961.7	novel	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000039218.18	Srrm2	chr17	protein_coding	serine/arginine repetitive matrix 2
novel_NIR_8183	chr17	24022987	24025906	+	24022281	24025906	A5SS	ENSMUST00000233636.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039218.18	Srrm2	chr17	protein_coding	serine/arginine repetitive matrix 2
novel_NIR_8184	chr17	24319882	24326203	-	24317143	24326203	A3SS	ENSMUST00000115409.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024122.17	Pdpk1	chr17	protein_coding	3-phosphoinositide dependent protein kinase 1
novel_NIR_8185	chr17	24319882	24326203	-	24319882	24329822	A5SS	ENSMUST00000140906.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024122.17	Pdpk1	chr17	protein_coding	3-phosphoinositide dependent protein kinase 1
novel_NIR_8186	chr17	24382089	24382556	-	24382306	24382556	A3SS	ENSMUST00000131766.2	novel	0.00	0	28	0	28	n	0.00	0	31	0	31	n	0.00	0	33	0	33	n	0.00	0	33	0	33	n	0.00	0	36	0	36	n	0.00	0	20	0	20	n	0.00	0	33	0	33	n	0.16	3	16	3	16	y	0.00	0	28	0	28	n	0.00	0	63	0	63	n	0.00	0	40	0	40	n	0.00	0	43	0	43	n	ENSMUSG00000036820.13	Amdhd2	chr17	protein_coding	amidohydrolase domain containing 2
novel_NIR_8187	chr17	24399650	24400138	-	24399650	24400105	5pMXE	ENSMUST00000202018.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036473.17	Tbc1d24	chr17	protein_coding	TBC1 domain family, member 24
novel_NIR_8188	chr17	24399650	24400138	-	24399650	24400199	A5SS	ENSMUST00000097376.10	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	0.09	2	21	2	21	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.09	1	10	1	10	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.57	4	3	4	3	y	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000036473.17	Tbc1d24	chr17	protein_coding	TBC1 domain family, member 24
novel_NIR_8189	chr17	24401637	24401760	-	24401519	24401760	A3SS	ENSMUST00000168410.9	novel	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	45	0	45	n	0.00	0	18	0	18	n	0.00	0	40	0	40	n	0.00	0	32	0	32	n	0.00	0	22	0	22	n	0.00	0	49	0	49	n	0.00	0	7	0	7	n	0.18	4	18	4	18	y	0.00	0	4	0	4	n	0.00	0	14	0	14	n	ENSMUSG00000036473.17	Tbc1d24	chr17	protein_coding	TBC1 domain family, member 24
novel_NIR_8190	chr17	24402822	24404384	-	24402822	24404178	A5SS	ENSMUST00000201359.4	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	4	0	4	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.33	2	4	2	4	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036473.17	Tbc1d24	chr17	protein_coding	TBC1 domain family, member 24
novel_NIR_8191	chr17	24404439	24408918	-	24402826	24408918	A3SS	ENSMUST00000201583.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036473.17	Tbc1d24	chr17	protein_coding	TBC1 domain family, member 24
novel_NIR_8192	chr17	24404439	24408918	-	24405261	24408918	A3SS	ENSMUST00000097376.10	novel	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	17	0	17	n	0.00	0	1	0	1	n	0.00	0	16	0	16	n	0.25	2	6	2	6	y	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	11	0	11	n	ENSMUSG00000036473.17	Tbc1d24	chr17	protein_coding	TBC1 domain family, member 24
novel_NIR_8193	chr17	24445757	24445861	-	24445757	24449290	A5SS	ENSMUST00000115390.5	novel	0.00	0	12	0	12	n	0.00	0	19	0	19	n	0.22	2	7	2	7	y	0.00	0	18	0	18	n	0.00	0	9	0	9	n	0.20	1	4	1	4	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	ENSMUSG00000072082.8	Ccnf	chr17	protein_coding	cyclin F
novel_NIR_8194	chr17	24576965	24578455	+	24576965	24579843	A3SS	ENSMUST00000155889.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000024130.17	Abca3	chr17	protein_coding	ATP-binding cassette, sub-family A (ABC1), member 3
novel_NIR_8195	chr17	24645913	24652153	+	24645913	24652116	A3SS	ENSMUST00000024946.7	novel	0.00	0	22	0	22	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	65	0	65	n	-	-	-	-	-	-	0.00	0	33	0	33	n	0.09	6	60	6	60	n	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000024132.7	Eci1	chr17	protein_coding	enoyl-Coenzyme A delta isomerase 1
novel_NIR_8196	chr17	24651783	24652107	+	24646096	24652107	A5SS	ENSMUST00000234023.2	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.75	3	1	3	1	y	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000024132.7	Eci1	chr17	protein_coding	enoyl-Coenzyme A delta isomerase 1
novel_NIR_8197	chr17	24666461	24668596	-	24666465	24668596	A3SS	ENSMUST00000227293.2	novel	0.00	0	22	0	22	n	0.07	1	13	1	13	n	0.06	1	15	1	15	n	0.00	0	16	0	16	n	0.00	0	17	0	17	n	0.12	1	7	1	7	n	0.12	2	14	2	14	n	0.00	0	17	0	17	n	0.00	0	8	0	8	n	0.05	1	21	1	21	n	0.17	3	15	3	15	y	0.00	0	26	0	26	n	ENSMUSG00000024137.10	E4f1	chr17	protein_coding	E4F transcription factor 1
novel_NIR_8198	chr17	24696303	24696404	-	24696307	24696404	A3SS	ENSMUST00000234941.2	novel	0.22	2	7	2	7	y	0.00	0	9	0	9	n	0.14	2	12	2	12	n	0.00	0	14	0	14	n	0.18	3	14	3	14	y	0.00	0	10	0	10	n	0.10	2	19	2	19	n	0.09	1	10	1	10	n	0.10	2	19	2	19	n	0.10	2	18	2	18	n	0.08	1	11	1	11	n	0.00	0	10	0	10	n	ENSMUSG00000024142.16	Mlst8	chr17	protein_coding	MTOR associated protein, LST8 homolog (S. cerevisiae)
novel_NIR_8199	chr17	24732296	24732873	-	24732058	24732873	A3SS	ENSMUST00000177502.8	novel	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	ENSMUSG00000052752.16	Traf7	chr17	protein_coding	TNF receptor-associated factor 7
novel_NIR_8200	chr17	24732296	24732873	-	24732350	24732873	A3SS	ENSMUST00000176652.8	novel	0.11	2	17	2	17	n	0.12	2	15	2	15	n	0.00	0	37	0	37	n	0.00	0	19	0	19	n	0.00	0	33	0	33	n	0.00	0	19	0	19	n	0.16	6	32	6	32	y	0.00	0	22	0	22	n	0.00	0	16	0	16	n	0.00	0	21	0	21	n	0.14	3	18	3	18	n	0.15	3	17	3	17	y	ENSMUSG00000052752.16	Traf7	chr17	protein_coding	TNF receptor-associated factor 7
novel_NIR_8201	chr17	24791083	24791927	+	24791083	24791592	A3SS	ENSMUST00000035565.5	novel	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.15	2	11	2	11	y	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	ENSMUSG00000032855.7	Pkd1	chr17	protein_coding	polycystin 1, transient receptor poteintial channel interacting
novel_NIR_8202	chr17	24797283	24797335	+	24797283	24797353	A3SS	ENSMUST00000035565.5	novel	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.29	2	5	2	5	y	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.06	1	16	1	16	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	ENSMUSG00000032855.7	Pkd1	chr17	protein_coding	polycystin 1, transient receptor poteintial channel interacting
novel_NIR_8203	chr17	24797512	24797751	+	24797512	24797785	A3SS	ENSMUST00000035565.5	novel	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.18	2	9	2	9	y	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	17	0	17	n	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	ENSMUSG00000032855.7	Pkd1	chr17	protein_coding	polycystin 1, transient receptor poteintial channel interacting
novel_NIR_8204	chr17	24806266	24806371	+	24806266	24806374	A3SS	ENSMUST00000035565.5	novel	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.00	0	17	0	17	n	0.27	4	11	4	11	y	0.00	0	17	0	17	n	0.42	5	7	5	7	y	0.18	3	14	3	14	y	0.33	5	10	5	10	y	0.12	1	7	1	7	n	0.15	3	17	3	17	y	0.00	0	8	0	8	n	0.06	1	16	1	16	n	ENSMUSG00000032855.7	Pkd1	chr17	protein_coding	polycystin 1, transient receptor poteintial channel interacting
novel_NIR_8205	chr17	24806423	24806582	+	24806423	24806624	A3SS	ENSMUST00000035565.5	novel	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	29	0	29	n	0.00	0	18	0	18	n	0.17	4	20	4	20	y	0.09	1	10	1	10	n	0.00	0	24	0	24	n	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.04	1	25	1	25	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	ENSMUSG00000032855.7	Pkd1	chr17	protein_coding	polycystin 1, transient receptor poteintial channel interacting
novel_NIR_8206	chr17	24810119	24810261	+	24810191	24810261	A5SS	ENSMUST00000035565.5	novel	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.00	0	22	0	22	n	0.00	0	14	0	14	n	0.00	0	20	0	20	n	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.07	1	13	1	13	n	0.19	3	13	3	13	y	0.00	0	18	0	18	n	0.00	0	14	0	14	n	0.00	0	17	0	17	n	ENSMUSG00000032855.7	Pkd1	chr17	protein_coding	polycystin 1, transient receptor poteintial channel interacting
novel_NIR_8207	chr17	24810455	24810814	+	24810455	24811585	A3SS	ENSMUST00000228581.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032855.7	Pkd1	chr17	protein_coding	polycystin 1, transient receptor poteintial channel interacting
novel_NIR_8208	chr17	24847079	24847916	-	24847082	24847916	A3SS	ENSMUST00000226284.2	novel	0.09	2	20	2	20	n	0.00	0	8	0	8	n	0.12	4	29	4	29	n	0.19	3	13	3	13	y	0.00	0	41	0	41	n	0.21	3	11	3	11	y	0.13	5	33	5	33	n	0.00	0	15	0	15	n	0.24	4	13	4	13	y	0.11	4	32	4	32	n	0.06	1	15	1	15	n	0.05	2	42	2	42	n	ENSMUSG00000002496.11	Tsc2	chr17	protein_coding	TSC complex subunit 2
novel_NIR_8209	chr17	24849973	24850915	-	24849973	24850919	A5SS	ENSMUST00000226284.2	novel	0.00	0	25	0	25	n	0.29	2	5	2	5	y	0.00	0	29	0	29	n	0.00	0	24	0	24	n	0.02	1	42	1	42	n	0.00	0	10	0	10	n	0.12	4	29	4	29	n	0.05	1	19	1	19	n	0.00	0	17	0	17	n	0.02	1	43	1	43	n	0.00	0	13	0	13	n	0.03	1	31	1	31	n	ENSMUSG00000002496.11	Tsc2	chr17	protein_coding	TSC complex subunit 2
novel_NIR_8210	chr17	24849973	24850915	-	24849973	24850971	A5SS	ENSMUST00000227607.2	novel	0.00	0	2	0	2	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	1	0	1	n	1.00	4	0	4	0	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000002496.11	Tsc2	chr17	protein_coding	TSC complex subunit 2
novel_NIR_8211	chr17	24861344	24861979	-	24861344	24863793	A5SS	ENSMUST00000019684.13	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.50	1	1	1	1	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000002504.16	Slc9a3r2	chr17	protein_coding	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2
novel_NIR_8212	chr17	24913416	24914805	-	24913416	24913765	5pMXE	ENSMUST00000234811.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040888.11	Gfer	chr17	protein_coding	growth factor, augmenter of liver regeneration
novel_NIR_8213	chr17	24914323	24914805	-	24914391	24914805	A3SS	ENSMUST00000234235.2	novel	0.20	2	8	2	8	y	0.00	0	14	0	14	n	0.00	0	20	0	20	n	0.00	0	13	0	13	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	20	0	20	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	ENSMUSG00000040888.11	Gfer	chr17	protein_coding	growth factor, augmenter of liver regeneration
novel_NIR_8214	chr17	24914412	24914805	-	24914391	24914805	A3SS	ENSMUST00000234235.2	novel	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.00	0	20	0	20	n	0.00	0	13	0	13	n	0.25	5	15	5	15	y	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	20	0	20	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.25	3	9	3	9	y	ENSMUSG00000040888.11	Gfer	chr17	protein_coding	growth factor, augmenter of liver regeneration
novel_NIR_8215	chr17	24972442	24975427	+	24972442	24976935	A3SS	ENSMUST00000234202.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039628.10	Hs3st6	chr17	protein_coding	heparan sulfate (glucosamine) 3-O-sulfotransferase 6
novel_NIR_8216	chr17	24972442	24975427	+	24972472	24975427	A5SS	ENSMUST00000235111.2	novel	0.40	2	3	2	3	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000039628.10	Hs3st6	chr17	protein_coding	heparan sulfate (glucosamine) 3-O-sulfotransferase 6
novel_NIR_8217	chr17	24972442	24975427	+	24972503	24975427	A5SS	ENSMUST00000234340.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039628.10	Hs3st6	chr17	protein_coding	heparan sulfate (glucosamine) 3-O-sulfotransferase 6
novel_NIR_8218	chr17	24972503	24976935	+	24972442	24976935	A5SS	ENSMUST00000234202.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039628.10	Hs3st6	chr17	protein_coding	heparan sulfate (glucosamine) 3-O-sulfotransferase 6
novel_NIR_8219	chr17	24972503	24976935	+	24972472	24976935	A5SS	ENSMUST00000044922.8	novel	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.33	2	4	2	4	y	0.25	1	3	1	3	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000039628.10	Hs3st6	chr17	protein_coding	heparan sulfate (glucosamine) 3-O-sulfotransferase 6
novel_NIR_8220	chr17	24972503	24976935	+	24972503;24975518	24975427;24976935	ES	ENSMUST00000234340.2	novel	0.00	0	1.5	0	0;3	n	0.00	0	2.5	0	0;5	n	-	-	-	-	-	-	0.00	0	0.5	0	0;1	n	1.00	1	0.0	1	0;0	n	0.00	0	0.5	0	0;1	n	0.31	2	4.5	2	1;8	y	1.00	1	0.0	1	0;0	n	0.00	0	1.0	0	0;2	n	-	-	-	-	-	-	0.00	0	1.5	0	0;3	n	0.00	0	1.0	0	0;2	n	ENSMUSG00000039628.10	Hs3st6	chr17	protein_coding	heparan sulfate (glucosamine) 3-O-sulfotransferase 6
novel_NIR_8221	chr17	24972503	24976935	+	24975518	24976935	A5SS&ES	ENSMUST00000235111.2	novel	0.00	0	3	0	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.20	2	8	2	8	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000039628.10	Hs3st6	chr17	protein_coding	heparan sulfate (glucosamine) 3-O-sulfotransferase 6
novel_NIR_8222	chr17	25037382	25042506	+	25037382;25038918	25038846;25042506	ES	ENSMUST00000024972.7	novel	0.10	1	9.0	1	6;12	n	0.21	2	7.5	2	7;8	y	0.38	6	10.0	6	3;17	y	0.31	7	15.5	7	13;18	y	0.30	11	25.5	11	20;31	y	0.00	0	15.0	0	12;18	n	0.34	6	11.5	6	8;15	y	0.14	2	12.0	2	9;15	n	0.21	2	7.5	2	4;11	y	0.29	12	29.0	12	22;36	y	0.50	9	9.0	9	7;11	y	0.28	8	20.5	8	15;26	y	ENSMUSG00000024155.9	Meiob	chr17	protein_coding	meiosis specific with OB domains
novel_NIR_8223	chr17	25037382	25042506	+	25038918	25042506	A5SS&ES	ENSMUST00000234372.2	novel	0.08	1	12	1	12	n	0.20	2	8	2	8	y	0.26	6	17	6	17	y	0.28	7	18	7	18	y	0.26	11	31	11	31	y	0.00	0	18	0	18	n	0.29	6	15	6	15	y	0.12	2	15	2	15	n	0.15	2	11	2	11	y	0.25	12	36	12	36	y	0.45	9	11	9	11	y	0.24	8	26	8	26	y	ENSMUSG00000024155.9	Meiob	chr17	protein_coding	meiosis specific with OB domains
novel_NIR_8224	chr17	25048159	25052869	+	25048159;25051497	25051399;25052869	ES	ENSMUST00000234372.2	novel	0.00	0	13.5	0	16;11	n	0.09	2	19.5	2	15;24	n	0.17	4	19.5	4	12;27	y	0.12	2	14.0	2	14;14	n	0.00	0	32.5	0	32;33	n	0.00	0	12.5	0	17;8	n	0.19	4	17.5	4	14;21	y	0.22	3	10.5	3	8;13	y	0.19	5	22.0	5	27;17	y	0.16	6	32.0	6	37;27	y	0.05	1	19.0	1	13;25	n	0.00	0	37.0	0	32;42	n	ENSMUSG00000024155.9	Meiob	chr17	protein_coding	meiosis specific with OB domains
novel_NIR_8225	chr17	25054149	25058401	+	25054149;25055496	25055410;25058401	ES	ENSMUST00000234372.2	novel	0.15	3	17.5	3	13;22	y	0.18	4	18.5	4	19;18	y	0.30	5	11.5	5	13;10	y	0.29	6	14.5	6	17;12	y	0.65	17	9.0	17	9;9	y	0.44	7	9.0	7	10;8	y	0.35	8	15.0	8	15;15	y	0.40	4	6.0	4	6;6	y	0.49	11	11.5	11	8;15	y	0.49	24	25.0	24	28;22	y	0.47	20	22.5	20	17;28	y	0.36	12	21.0	12	20;22	y	ENSMUSG00000024155.9	Meiob	chr17	protein_coding	meiosis specific with OB domains
novel_NIR_8226	chr17	25060459	25071705	+	25059255	25071705	A5SS	ENSMUST00000164251.8	novel	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.42	5	7	5	7	y	ENSMUSG00000024158.18	Hagh	chr17	protein_coding	hydroxyacyl glutathione hydrolase
novel_NIR_8227	chr17	25060459	25071705	+	25069729	25071705	5pMXE	ENSMUST00000130989.8	novel	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	0.14	1	6	1	6	n	0.00	0	3	0	3	n	0.56	5	4	5	4	y	ENSMUSG00000024158.18	Hagh	chr17	protein_coding	hydroxyacyl glutathione hydrolase
novel_NIR_8228	chr17	25060459	25071705	+	25070057	25071705	5pMXE	ENSMUST00000149716.4	novel	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	y	ENSMUSG00000024158.18	Hagh	chr17	protein_coding	hydroxyacyl glutathione hydrolase
novel_NIR_8229	chr17	25097798	25099093	+	25097798	25098989	A3SS	ENSMUST00000234754.2	novel	0.00	0	17	0	17	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.38	5	8	5	8	y	0.00	0	11	0	11	n	-	-	-	-	-	-	0.00	0	13	0	13	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.13	2	13	2	13	n	0.00	0	5	0	5	n	0.31	5	11	5	11	y	ENSMUSG00000046070.10	Igfals	chr17	protein_coding	insulin-like growth factor binding protein, acid labile subunit
novel_NIR_8230	chr17	25097798	25099185	+	25097798	25098989	A3SS	ENSMUST00000234754.2	novel	0.15	3	17	3	17	y	0.58	7	5	7	5	y	0.33	1	2	1	2	n	0.33	4	8	4	8	y	0.62	18	11	18	11	y	-	-	-	-	-	-	0.24	4	13	4	13	y	0.33	1	2	1	2	n	0.23	3	10	3	10	y	0.54	15	13	15	13	y	0.55	6	5	6	5	y	0.50	11	11	11	11	y	ENSMUSG00000046070.10	Igfals	chr17	protein_coding	insulin-like growth factor binding protein, acid labile subunit
novel_NIR_8231	chr17	25102846	25103099	-	25102288	25103099	A3SS	ENSMUST00000234598.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000039183.7	Nubp2	chr17	protein_coding	nucleotide binding protein 2
novel_NIR_8232	chr17	25102846	25103099	-	25102863	25103099	A3SS	ENSMUST00000234098.2	novel	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000039183.7	Nubp2	chr17	protein_coding	nucleotide binding protein 2
novel_NIR_8233	chr17	25106891	25107849	+	25106891	25108060	A3SS	ENSMUST00000144430.2	novel	0.60	3	2	3	2	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	6	0	6	n	ENSMUSG00000024160.17	Spsb3	chr17	protein_coding	splA/ryanodine receptor domain and SOCS box containing 3
novel_NIR_8234	chr17	25108142	25109262	+	25108142	25109257	A3SS	ENSMUST00000144430.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000024160.17	Spsb3	chr17	protein_coding	splA/ryanodine receptor domain and SOCS box containing 3
novel_NIR_8235	chr17	25109434	25109807	+	25109434	25109526	3pMXE	ENSMUST00000130194.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024160.17	Spsb3	chr17	protein_coding	splA/ryanodine receptor domain and SOCS box containing 3
novel_NIR_8236	chr17	25112743	25113105	-	25111657	25113105	A3SS	ENSMUST00000156659.8	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000073436.12	Eme2	chr17	protein_coding	essential meiotic structure-specific endonuclease subunit 2
novel_NIR_8237	chr17	25113681	25113829	-	25113729	25113829	A3SS	ENSMUST00000139754.8	novel	0.20	1	4	1	4	n	-	-	-	-	-	-	0.29	2	5	2	5	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.20	1	4	1	4	n	0.00	0	1	0	1	n	ENSMUSG00000073436.12	Eme2	chr17	protein_coding	essential meiotic structure-specific endonuclease subunit 2
novel_NIR_8238	chr17	25113729	25113809	-	25113729	25113829	A5SS	ENSMUST00000139754.8	novel	0.00	0	4	0	4	n	1.00	1	0	1	0	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	2	4	2	4	y	0.00	0	1	0	1	n	ENSMUSG00000073436.12	Eme2	chr17	protein_coding	essential meiotic structure-specific endonuclease subunit 2
novel_NIR_8239	chr17	25114120	25114384	-	25114120	25114580	A5SS	ENSMUST00000146923.8	novel	0.67	2	1	2	1	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000024163.18	Mapk8ip3	chr17	protein_coding	mitogen-activated protein kinase 8 interacting protein 3
novel_NIR_8240	chr17	25115533	25115638	+	25115533	25115602	A3SS	ENSMUST00000024978.7	novel	0.07	4	55	4	55	n	0.22	14	49	14	49	y	0.00	0	31	0	31	n	0.10	8	71	8	71	n	0.10	8	74	8	74	n	0.00	0	13	0	13	n	0.12	8	61	8	61	n	0.05	2	39	2	39	n	0.16	13	68	13	68	y	0.16	14	73	14	73	y	0.15	13	72	13	72	y	0.09	9	91	9	91	n	ENSMUSG00000073435.11	Nme3	chr17	protein_coding	NME/NM23 nucleoside diphosphate kinase 3
novel_NIR_8241	chr17	25115533	25115638	+	25115533	25115609	A3SS	ENSMUST00000150500.8	novel	0.40	4	6	4	6	y	1.00	14	0	14	0	y	-	-	-	-	-	-	0.62	8	5	8	5	y	0.73	8	3	8	3	y	-	-	-	-	-	-	0.67	8	4	8	4	y	1.00	2	0	2	0	y	0.76	13	4	13	4	y	0.64	14	8	14	8	y	0.57	13	10	13	10	y	1.00	9	0	9	0	y	ENSMUSG00000073435.11	Nme3	chr17	protein_coding	NME/NM23 nucleoside diphosphate kinase 3
novel_NIR_8242	chr17	25116077	25116188	+	25115927	25116188	A5SS	ENSMUST00000125532.2	novel	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	8	0	8	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	7	0	7	0	y	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	ENSMUSG00000073435.11	Nme3	chr17	protein_coding	NME/NM23 nucleoside diphosphate kinase 3
novel_NIR_8243	chr17	25116106	25116188	+	25115927	25116188	A5SS	ENSMUST00000125532.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000073435.11	Nme3	chr17	protein_coding	NME/NM23 nucleoside diphosphate kinase 3
novel_NIR_8244	chr17	25126360	25131722	-	25126360	25127385	A5SS&ES	ENSMUST00000115229.10	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	5	0	5	0	y	0.00	0	1	0	1	n	ENSMUSG00000024163.18	Mapk8ip3	chr17	protein_coding	mitogen-activated protein kinase 8 interacting protein 3
novel_NIR_8245	chr17	25126360	25131722	-	25126360;25128135	25128124;25131722	ES	ENSMUST00000115228.9	novel	0.05	1	20.0	1	23;17	n	0.00	0	9.5	0	13;6	n	0.08	2	24.0	2	26;22	n	0.00	0	19.5	0	24;15	n	0.00	0	22.5	0	29;16	n	0.00	0	11.5	0	12;11	n	0.00	0	18.0	0	22;14	n	0.00	0	10.0	0	11;9	n	0.00	0	11.5	0	13;10	n	0.11	1	8.0	1	12;4	n	0.43	5	6.5	5	8;5	y	0.00	0	7.0	0	7;7	n	ENSMUSG00000024163.18	Mapk8ip3	chr17	protein_coding	mitogen-activated protein kinase 8 interacting protein 3
novel_NIR_8246	chr17	25136559	25137062	-	25133679	25137062	A3SS	ENSMUST00000117509.8	novel	0.67	2	1	2	1	y	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	3	3	3	3	y	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.62	5	3	5	3	y	ENSMUSG00000024163.18	Mapk8ip3	chr17	protein_coding	mitogen-activated protein kinase 8 interacting protein 3
novel_NIR_8247	chr17	25137110	25139446	-	25137110	25142790	A5SS	ENSMUST00000119115.8	novel	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000024163.18	Mapk8ip3	chr17	protein_coding	mitogen-activated protein kinase 8 interacting protein 3
novel_NIR_8248	chr17	25137110	25139446	-	25137113	25139446	A3SS	ENSMUST00000115229.10	novel	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	7	0	7	n	ENSMUSG00000024163.18	Mapk8ip3	chr17	protein_coding	mitogen-activated protein kinase 8 interacting protein 3
novel_NIR_8249	chr17	25191375	25192061	-	25191375	25192055	A5SS	ENSMUST00000073337.8	novel	0.50	2	2	2	2	y	0.00	0	8	0	8	n	0.19	4	17	4	17	y	0.43	6	8	6	8	y	0.13	2	13	2	13	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.17	1	5	1	5	n	ENSMUSG00000038002.10	Cramp1l	chr17	protein_coding	cramped chromatin regulator homolog 1
novel_NIR_8250	chr17	25222375	25232662	-	25222379	25232662	A3SS	ENSMUST00000073337.8	novel	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.18	2	9	2	9	y	0.00	0	3	0	3	n	0.00	0	10	0	10	n	ENSMUSG00000038002.10	Cramp1l	chr17	protein_coding	cramped chromatin regulator homolog 1
novel_NIR_8251	chr17	25223765	25232662	-	25222379	25232662	A3SS	ENSMUST00000073337.8	novel	0.50	2	2	2	2	y	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.33	4	8	4	8	y	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.10	1	9	1	9	n	0.25	1	3	1	3	n	0.00	0	10	0	10	n	ENSMUSG00000038002.10	Cramp1l	chr17	protein_coding	cramped chromatin regulator homolog 1
novel_NIR_8252	chr17	25324815	25324963	-	25318968	25324963	A3SS	ENSMUST00000155632.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000024170.16	Telo2	chr17	protein_coding	telomere maintenance 2
novel_NIR_8253	chr17	25324815	25324963	-	25324817	25324963	A3SS	ENSMUST00000155607.8	novel	0.20	2	8	2	8	y	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.44	4	5	4	5	y	ENSMUSG00000024170.16	Telo2	chr17	protein_coding	telomere maintenance 2
novel_NIR_8254	chr17	25326413	25329201	-	25326369	25329201	A3SS	ENSMUST00000155607.8	novel	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.11	1	8	1	8	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.10	1	9	1	9	n	0.20	1	4	1	4	n	0.18	2	9	2	9	y	ENSMUSG00000024170.16	Telo2	chr17	protein_coding	telomere maintenance 2
novel_NIR_8255	chr17	25372128	25372719	+	25372128	25372535	A3SS	ENSMUST00000162862.3	novel	0.75	3	1	3	1	y	0.67	4	2	4	2	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	ENSMUSG00000036636.11	Clcn7	chr17	protein_coding	chloride channel, voltage-sensitive 7
novel_NIR_8256	chr17	25407466	25408543	+	25407466	25408440	A3SS	ENSMUST00000039734.12	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.20	1	4	1	4	n	-	-	-	-	-	-	0.33	2	4	2	4	y	ENSMUSG00000015127.15	Unkl	chr17	protein_coding	unkempt family like zinc finger
novel_NIR_8257	chr17	25407991	25408486	+	25407991	25408440	A3SS	ENSMUST00000160896.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000015127.15	Unkl	chr17	protein_coding	unkempt family like zinc finger
novel_NIR_8258	chr17	25453664	25453782	-	25453696	25453782	A3SS	ENSMUST00000115154.11	novel	0.27	36	98	36	98	y	0.27	58	154	58	154	y	0.25	45	137	45	137	y	0.31	44	96	44	96	y	0.28	61	154	61	154	y	0.26	30	87	30	87	y	0.25	50	154	50	154	y	0.25	31	92	31	92	y	0.35	39	71	39	71	y	0.32	56	119	56	119	y	0.28	40	101	40	101	y	0.24	37	117	37	117	y	ENSMUSG00000035521.14	Gnptg	chr17	protein_coding	N-acetylglucosamine-1-phosphotransferase, gamma subunit
novel_NIR_8259	chr17	25459616	25460038	+	25459637	25460038	A5SS	ENSMUST00000063574.7	novel	0.03	1	34	1	34	n	0.00	0	45	0	45	n	0.06	4	61	4	61	n	0.04	2	49	2	49	n	0.15	9	51	9	51	y	0.00	0	29	0	29	n	0.05	2	39	2	39	n	0.00	0	47	0	47	n	0.03	1	29	1	29	n	0.04	2	53	2	53	n	0.05	2	39	2	39	n	0.05	2	42	2	42	n	ENSMUSG00000015126.10	Tsr3	chr17	protein_coding	TSR3 20S rRNA accumulation
novel_NIR_8260	chr17	25463001	25463101	-	25463001	25463080	A5SS	ENSMUST00000182056.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000047507.13	Baiap3	chr17	protein_coding	BAI1-associated protein 3
novel_NIR_8261	chr17	25488453	25492234	-	25488453	25491512	A5SS&ES	ENSMUST00000173084.8	novel	0.08	1	11	1	11	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.10	1	9	1	9	n	0.00	0	3	0	3	n	0.11	1	8	1	8	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	15	0	15	n	0.33	2	4	2	4	y	0.00	0	4	0	4	n	ENSMUSG00000015120.16	Ube2i	chr17	protein_coding	ubiquitin-conjugating enzyme E2I
novel_NIR_8262	chr17	25488453	25492234	-	25488453	25492456	A5SS	ENSMUST00000173621.8	novel	0.12	1	7	1	7	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.08	1	11	1	11	n	0.00	0	4	0	4	n	0.11	1	8	1	8	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.00	0	7	0	7	n	ENSMUSG00000015120.16	Ube2i	chr17	protein_coding	ubiquitin-conjugating enzyme E2I
novel_NIR_8263	chr17	25488453	25492234	-	25488453	25493147	A5SS	ENSMUST00000049911.16	novel	0.17	1	5	1	5	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.08	1	11	1	11	n	0.00	0	2	0	2	n	0.11	1	8	1	8	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.20	2	8	2	8	y	0.00	0	11	0	11	n	ENSMUSG00000015120.16	Ube2i	chr17	protein_coding	ubiquitin-conjugating enzyme E2I
novel_NIR_8264	chr17	25488453	25492234	-	25488453	25493497	A5SS	ENSMUST00000174001.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000015120.16	Ube2i	chr17	protein_coding	ubiquitin-conjugating enzyme E2I
novel_NIR_8265	chr17	25831418	25864123	+	25831418	25849581	3pMXE	ENSMUST00000156868.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	ENSMUSG00000002279.20	Lmf1	chr17	protein_coding	lipase maturation factor 1
novel_NIR_8266	chr17	25864290	25873411	+	25864290	25873500	A3SS	ENSMUST00000154842.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.62	5	3	5	3	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000002279.20	Lmf1	chr17	protein_coding	lipase maturation factor 1
novel_NIR_8267	chr17	25968927	25969025	-	25968927	25969005	A5SS	ENSMUST00000075884.8	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.33	2	4	2	4	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000063011.8	Msln	chr17	protein_coding	mesothelin
novel_NIR_8268	chr17	26000794	26000990	+	26000704	26000990	A5SS	ENSMUST00000237541.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000002280.12	Ciao3	chr17	protein_coding	cytosolic iron-sulfur assembly component 3
novel_NIR_8269	chr17	26004168	26004436	-	26004168	26004259	A5SS	ENSMUST00000145053.2	novel	1.00	1	0	1	0	n	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061046.10	Haghl	chr17	protein_coding	hydroxyacylglutathione hydrolase-like
novel_NIR_8270	chr17	26004168	26004436	-	26004168	26004402	A5SS	ENSMUST00000140738.8	novel	0.08	1	12	1	12	n	0.06	1	15	1	15	n	0.00	0	18	0	18	n	0.20	2	8	2	8	y	0.00	0	22	0	22	n	0.00	0	10	0	10	n	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.00	0	16	0	16	n	0.00	0	15	0	15	n	0.00	0	11	0	11	n	0.00	0	20	0	20	n	ENSMUSG00000061046.10	Haghl	chr17	protein_coding	hydroxyacylglutathione hydrolase-like
novel_NIR_8271	chr17	26009752	26010320	-	26009292	26010320	A3SS	ENSMUST00000237093.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000057411.10	Antkmt	chr17	protein_coding	adenine nucleotide translocase lysine methyltransferase
novel_NIR_8272	chr17	26015236	26015839	-	26015323	26015839	A3SS	ENSMUST00000235925.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000002274.14	Metrn	chr17	protein_coding	meteorin, glial cell differentiation regulator
novel_NIR_8273	chr17	26015323	26015428	-	26015323	26015839	A5SS	ENSMUST00000235925.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000002274.14	Metrn	chr17	protein_coding	meteorin, glial cell differentiation regulator
novel_NIR_8274	chr17	26043660	26044633	+	26043660	26044071	A3SS&ES	ENSMUST00000160829.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025737.6	Wdr24	chr17	protein_coding	WD repeat domain 24
novel_NIR_8275	chr17	26051161	26051666	-	26051280	26051666	A3SS	ENSMUST00000236361.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039615.10	Stub1	chr17	protein_coding	STIP1 homology and U-Box containing protein 1
novel_NIR_8276	chr17	26051218	26051492	-	26051218	26052060	A5SS	ENSMUST00000237186.2	novel	0.36	5	9	5	9	y	0.00	0	5	0	5	n	0.40	4	6	4	6	y	0.17	1	5	1	5	n	0.32	7	15	7	15	y	0.50	2	2	2	2	y	0.24	4	13	4	13	y	0.50	1	1	1	1	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.44	4	5	4	5	y	0.00	0	9	0	9	n	ENSMUSG00000039615.10	Stub1	chr17	protein_coding	STIP1 homology and U-Box containing protein 1
novel_NIR_8277	chr17	26051944	26052060	-	26051218	26052060	A3SS	ENSMUST00000237186.2	novel	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	15	0	15	n	0.00	0	2	0	2	n	0.00	0	13	0	13	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.25	3	9	3	9	y	0.00	0	5	0	5	n	0.00	0	9	0	9	n	ENSMUSG00000039615.10	Stub1	chr17	protein_coding	STIP1 homology and U-Box containing protein 1
novel_NIR_8278	chr17	26078457	26078832	-	26078466	26078832	A3SS	ENSMUST00000177170.8	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.38	3	5	3	5	y	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	3	3	3	3	y	ENSMUSG00000073434.13	Wdr90	chr17	protein_coding	WD repeat domain 90
novel_NIR_8279	chr17	26083695	26084513	-	26083695	26084509	A5SS	ENSMUST00000237080.2	novel	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	16	0	16	n	0.07	1	14	1	14	n	0.50	3	3	3	3	y	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.31	4	9	4	9	y	0.00	0	6	0	6	n	0.00	0	6	0	6	n	ENSMUSG00000025732.7	Mcrip2	chr17	protein_coding	MAPK regulated corepressor interacting protein 2
novel_NIR_8280	chr17	26083695	26084513	-	26083695	26086608	A5SS	ENSMUST00000237876.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.25	1	3	1	3	n	0.75	3	1	3	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	4	4	4	4	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000025732.7	Mcrip2	chr17	protein_coding	MAPK regulated corepressor interacting protein 2
novel_NIR_8281	chr17	26083695	26084541	-	26083695	26084509	A5SS	ENSMUST00000237080.2	novel	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.16	3	16	3	16	y	0.00	0	14	0	14	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.25	2	6	2	6	y	0.00	0	6	0	6	n	ENSMUSG00000025732.7	Mcrip2	chr17	protein_coding	MAPK regulated corepressor interacting protein 2
novel_NIR_8282	chr17	26083695	26084541	-	26083695	26086608	A5SS	ENSMUST00000237876.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.40	2	3	2	3	y	0.00	0	3	0	3	n	ENSMUSG00000025732.7	Mcrip2	chr17	protein_coding	MAPK regulated corepressor interacting protein 2
novel_NIR_8283	chr17	26110320	26126804	-	26110320	26132584	A5SS	ENSMUST00000166619.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025730.15	Rab40c	chr17	protein_coding	Rab40C, member RAS oncogene family
novel_NIR_8284	chr17	26110320	26126804	-	26110320	26136493	A5SS	ENSMUST00000166146.8	novel	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025730.15	Rab40c	chr17	protein_coding	Rab40C, member RAS oncogene family
novel_NIR_8285	chr17	26110320	26126804	-	26110320	26138339	A5SS	ENSMUST00000179998.8	novel	0.00	0	13	0	13	n	0.17	2	10	2	10	y	0.00	0	19	0	19	n	0.07	1	14	1	14	n	0.04	1	26	1	26	n	0.00	0	7	0	7	n	0.00	0	30	0	30	n	0.07	1	13	1	13	n	0.00	0	15	0	15	n	0.00	0	25	0	25	n	0.00	0	16	0	16	n	0.00	0	17	0	17	n	ENSMUSG00000025730.15	Rab40c	chr17	protein_coding	Rab40C, member RAS oncogene family
novel_NIR_8286	chr17	26150186	26150436	-	26149609	26150436	A3SS	ENSMUST00000207073.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025728.17	Pigq	chr17	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class Q
novel_NIR_8287	chr17	26156436	26158106	-	26156436	26159797	A5SS	ENSMUST00000139226.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000025728.17	Pigq	chr17	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class Q
novel_NIR_8288	chr17	26156436	26158106	-	26156436	26161241	A5SS	ENSMUST00000148382.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000025728.17	Pigq	chr17	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class Q
novel_NIR_8289	chr17	26156436	26158106	-	26156436	26161744	A5SS	ENSMUST00000208043.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000025728.17	Pigq	chr17	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class Q
novel_NIR_8290	chr17	26156436	26158106	-	26156436	26161768	A5SS	ENSMUST00000145745.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000025728.17	Pigq	chr17	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class Q
novel_NIR_8291	chr17	26156436	26158106	-	26156436	26163438	A5SS	ENSMUST00000148307.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000025728.17	Pigq	chr17	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class Q
novel_NIR_8292	chr17	26156436	26158106	-	26156436	26163851	A5SS	ENSMUST00000237570.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000025728.17	Pigq	chr17	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class Q
novel_NIR_8293	chr17	26156436;26158218	26158106;26160789	-	26156436;26159868	26159797;26160789	MXE	ENSMUST00000139226.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1.0	0.0	2;0	0;0	n	1.00	1.0	0.0	1;1	0;0	n	1.00	0.5	0.0	1;0	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3.0	0.0	4;2	0;0	y	-	-	-	-	-	-	1.00	0.5	0.0	1;0	0;0	n	-	-	-	-	-	-	ENSMUSG00000025728.17	Pigq	chr17	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class Q
novel_NIR_8294	chr17	26182119	26182281	-	26182119	26182221	A5SS	ENSMUST00000212735.2	novel	0.00	0	22	0	22	n	0.14	2	12	2	12	n	0.00	0	35	0	35	n	0.00	0	31	0	31	n	0.00	0	33	0	33	n	0.00	0	19	0	19	n	0.05	1	21	1	21	n	0.00	0	13	0	13	n	0.00	0	13	0	13	n	0.00	0	21	0	21	n	0.33	4	8	4	8	y	0.00	0	23	0	23	n	ENSMUSG00000037326.11	Capn15	chr17	protein_coding	calpain 15
novel_NIR_8295	chr17	26182119	26182281	-	26182119	26183001	A5SS	ENSMUST00000212099.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	ENSMUSG00000037326.11	Capn15	chr17	protein_coding	calpain 15
novel_NIR_8296	chr17	26301235	26301854	-	26301235	26301945	A5SS	ENSMUST00000237265.2	novel	0.00	0	4	0	4	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.50	11	11	11	11	y	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	11	0	11	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	ENSMUSG00000036775.14	Decr2	chr17	protein_coding	2-4-dienoyl-Coenzyme A reductase 2, peroxisomal
novel_NIR_8297	chr17	26302015	26302550	-	26301944	26302550	A3SS	ENSMUST00000123056.2	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	4	0	4	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.50	3	3	3	3	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.33	2	4	2	4	y	1.00	1	0	1	0	n	ENSMUSG00000036775.14	Decr2	chr17	protein_coding	2-4-dienoyl-Coenzyme A reductase 2, peroxisomal
novel_NIR_8298	chr17	26339436	26339645	+	26339436	26340514	A3SS	ENSMUST00000235821.2	novel	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.25	1	3	1	3	n	0.22	2	7	2	7	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	ENSMUSG00000024180.15	Pgap6	chr17	protein_coding	post-glycosylphosphatidylinositol attachment to proteins 6
novel_NIR_8299	chr17	26343692	26344231	+	26343692	26344243	A3SS	ENSMUST00000237950.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	0.17	1	5	1	5	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024181.10	Mrpl28	chr17	protein_coding	mitochondrial ribosomal protein L28
novel_NIR_8300	chr17	26344365	26344470	+	26344365	26344474	A3SS	ENSMUST00000127647.3	novel	0.33	1	2	1	2	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.25	2	6	2	6	y	0.00	0	6	0	6	n	-	-	-	-	-	-	ENSMUSG00000024181.10	Mrpl28	chr17	protein_coding	mitochondrial ribosomal protein L28
novel_NIR_8301	chr17	26439554	26443310	-	26439554	26444902	A5SS	ENSMUST00000234262.2	novel	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.09	1	10	1	10	n	0.00	0	7	0	7	n	0.14	2	12	2	12	n	0.00	0	7	0	7	n	0.33	1	2	1	2	n	0.40	4	6	4	6	y	1.00	1	0	1	0	n	0.12	1	7	1	7	n	ENSMUSG00000024187.16	Fam234a	chr17	protein_coding	family with sequence similarity 234, member A
novel_NIR_8302	chr17	26439554	26444382	-	26439554	26444902	A5SS	ENSMUST00000234262.2	novel	0.20	1	4	1	4	n	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.12	1	7	1	7	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	1.00	1	0	1	0	n	0.00	0	7	0	7	n	ENSMUSG00000024187.16	Fam234a	chr17	protein_coding	family with sequence similarity 234, member A
novel_NIR_8303	chr17	26439554	26444382	-	26439554	26462980	A5SS	ENSMUST00000141240.3	novel	0.03	1	28	1	28	n	0.17	2	10	2	10	y	0.00	0	28	0	28	n	0.00	0	29	0	29	n	0.00	0	44	0	44	n	0.04	1	25	1	25	n	0.00	0	36	0	36	n	0.00	0	24	0	24	n	0.00	0	25	0	25	n	0.00	0	40	0	40	n	0.04	1	26	1	26	n	0.00	0	36	0	36	n	ENSMUSG00000024187.16	Fam234a	chr17	protein_coding	family with sequence similarity 234, member A
novel_NIR_8304	chr17	26780606	26824410	+	26780606	26787639	3pMXE	ENSMUST00000165021.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000001576.16	Ergic1	chr17	protein_coding	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1
novel_NIR_8305	chr17	26780606	26824410	+	26780606	26824438	A3SS	ENSMUST00000001619.16	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000001576.16	Ergic1	chr17	protein_coding	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1
novel_NIR_8306	chr17	26848653	26850900	+	26848653;26849053	26848875;26850900	ES	ENSMUST00000237902.2	novel	0.00	0	1.0	0	2;0	n	0.00	0	0.5	0	1;0	n	0.86	3	0.5	3	1;0	y	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	0.00	0	1.0	0	2;0	n	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	0.00	0	1.0	0	1;1	n	ENSMUSG00000001576.16	Ergic1	chr17	protein_coding	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1
novel_NIR_8307	chr17	26849503	26850900	+	26849053	26850900	A5SS	ENSMUST00000237902.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	ENSMUSG00000001576.16	Ergic1	chr17	protein_coding	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1
novel_NIR_8308	chr17	26849503	26850900	+	26849503	26853391	A3SS	ENSMUST00000235197.2	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000001576.16	Ergic1	chr17	protein_coding	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1
novel_NIR_8309	chr17	26851000	26851172	+	26851000	26853391	A3SS	ENSMUST00000237902.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.67	2	1	2	1	y	ENSMUSG00000001576.16	Ergic1	chr17	protein_coding	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1
novel_NIR_8310	chr17	26861434	26874041	+	26873834	26874041	A5SS&ES	ENSMUST00000236163.2	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	1.00	1	0	1	0	n	ENSMUSG00000001576.16	Ergic1	chr17	protein_coding	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1
novel_NIR_8311	chr17	26861434	26874041	+	26873927	26874041	A5SS&ES	ENSMUST00000235653.2	novel	0.00	0	10	0	10	n	-	-	-	-	-	-	0.22	2	7	2	7	y	0.12	1	7	1	7	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.08	1	12	1	12	n	ENSMUSG00000001576.16	Ergic1	chr17	protein_coding	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1
novel_NIR_8312	chr17	26934802	26955763	+	26934748	26955763	A5SS	ENSMUST00000062519.14	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.00	0	4	0	4	n	0.00	0	7	0	7	n	ENSMUSG00000048249.15	Crebrf	chr17	protein_coding	CREB3 regulatory factor
novel_NIR_8313	chr17	26934802	26955790	+	26934748	26955790	A5SS	ENSMUST00000144221.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000048249.15	Crebrf	chr17	protein_coding	CREB3 regulatory factor
novel_NIR_8314	chr17	27000150	27002241	+	27000150	27001552	A3SS	ENSMUST00000135899.2	novel	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.60	3	2	3	2	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	ENSMUSG00000024191.16	Bnip1	chr17	protein_coding	BCL2/adenovirus E1B interacting protein 1
novel_NIR_8315	chr17	27000150	27002392	+	27000150	27001552	A3SS&ES	ENSMUST00000126505.3	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000024191.16	Bnip1	chr17	protein_coding	BCL2/adenovirus E1B interacting protein 1
novel_NIR_8316	chr17	27000150;27002306	27002241;27002419	+	27000150;27001605	27001552;27002419	MXE	ENSMUST00000126505.3	novel	-	-	-	-	-	-	0.33	0.5	1.0	1;0	1;1	n	-	-	-	-	-	-	1.00	0.5	0.0	1;0	0;0	n	-	-	-	-	-	-	1.00	2.5	0.0	2;3	0;0	y	0.14	0.5	3.0	0;1	3;3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.56	2.5	2.0	3;2	2;2	y	0.00	0.0	1.0	0;0	2;0	n	1.00	0.5	0.0	1;0	0;0	n	ENSMUSG00000024191.16	Bnip1	chr17	protein_coding	BCL2/adenovirus E1B interacting protein 1
novel_NIR_8317	chr17	27153700	27154056	+	27153700	27154039	A3SS	ENSMUST00000236931.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000024193.9	Phf1	chr17	protein_coding	PHD finger protein 1
novel_NIR_8318	chr17	27157441	27157555	-	27157441	27157701	A5SS	ENSMUST00000236906.2	novel	-	-	-	-	-	-	0.17	1	5	1	5	n	-	-	-	-	-	-	0.67	4	2	4	2	y	0.33	1	2	1	2	n	0.50	1	1	1	1	n	1.00	3	0	3	0	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	1.00	8	0	8	0	y	0.00	0	1	0	1	n	1.00	4	0	4	0	y	ENSMUSG00000024194.17	Cuta	chr17	protein_coding	cutA divalent cation tolerance homolog
novel_NIR_8319	chr17	27157755	27157858	-	27157065	27157858	A3SS	ENSMUST00000236536.2	novel	1.00	8	0	8	0	y	1.00	10	0	10	0	y	1.00	5	0	5	0	y	1.00	4	0	4	0	y	1.00	12	0	12	0	y	1.00	4	0	4	0	y	1.00	9	0	9	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	19	0	19	0	y	0.85	11	2	11	2	y	1.00	2	0	2	0	y	ENSMUSG00000024194.17	Cuta	chr17	protein_coding	cutA divalent cation tolerance homolog
novel_NIR_8320	chr17	27248514	27248834	+	27248507	27248834	A5SS	ENSMUST00000236222.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000048731.16	Ggnbp1	chr17	protein_coding	gametogenetin binding protein 1
novel_NIR_8321	chr17	27345673	27352714	-	27344905	27352714	A3SS	ENSMUST00000119227.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024208.17	Uqcc2	chr17	protein_coding	ubiquinol-cytochrome c reductase complex assembly factor 2
novel_NIR_8322	chr17	27799924	27800982	-	27799901	27800982	A3SS	ENSMUST00000062397.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024213.15	Nudt3	chr17	protein_coding	nudix (nucleotide diphosphate linked moiety X)-type motif 3
novel_NIR_8323	chr17	27815808	27840980	-	27815808	27816055	5pMXE	ENSMUST00000231742.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024213.15	Nudt3	chr17	protein_coding	nudix (nucleotide diphosphate linked moiety X)-type motif 3
novel_NIR_8324	chr17	27815808	27840980	-	27815808	27830518	5pMXE	ENSMUST00000127236.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024213.15	Nudt3	chr17	protein_coding	nudix (nucleotide diphosphate linked moiety X)-type motif 3
novel_NIR_8325	chr17	27815808	27840980	-	27815808	27841306	A5SS	ENSMUST00000156429.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024213.15	Nudt3	chr17	protein_coding	nudix (nucleotide diphosphate linked moiety X)-type motif 3
novel_NIR_8326	chr17	27815808	27840980	-	27815808	27841565	A5SS	ENSMUST00000114886.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000024213.15	Nudt3	chr17	protein_coding	nudix (nucleotide diphosphate linked moiety X)-type motif 3
novel_NIR_8327	chr17	27815808	27840980	-	27815808	27850174	A5SS	ENSMUST00000233710.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000117338.2	Gm49804	chr17	protein_coding	predicted gene, 49804
novel_NIR_8328	chr17	27853449	27853922	-	27853449	27853718	A5SS	ENSMUST00000152982.3	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000052146.17	Rps10	chr17	protein_coding	ribosomal protein S10
novel_NIR_8329	chr17	27853449	27854680	-	27853449	27853718	5pMXE	ENSMUST00000152982.3	novel	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.29	2	5	2	5	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	ENSMUSG00000052146.17	Rps10	chr17	protein_coding	ribosomal protein S10
novel_NIR_8330	chr17	27853449	27854680	-	27853449	27855539	A5SS	ENSMUST00000114881.9	novel	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.00	0	18	0	18	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.18	2	9	2	9	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000052146.17	Rps10	chr17	protein_coding	ribosomal protein S10
novel_NIR_8331	chr17	27854307	27855539	-	27853449	27855539	A3SS	ENSMUST00000114881.9	novel	0.40	2	3	2	3	n	0.00	0	5	0	5	n	0.58	25	18	25	18	y	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.47	8	9	8	9	y	0.17	1	5	1	5	n	0.75	6	2	6	2	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000052146.17	Rps10	chr17	protein_coding	ribosomal protein S10
novel_NIR_8332	chr17	27854488	27855539	-	27853449	27855539	A3SS	ENSMUST00000114881.9	novel	0.25	1	3	1	3	n	0.17	1	5	1	5	n	0.33	9	18	9	18	y	0.50	1	1	1	1	n	0.80	4	1	4	1	y	0.33	2	4	2	4	y	0.10	1	9	1	9	n	0.50	5	5	5	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000052146.17	Rps10	chr17	protein_coding	ribosomal protein S10
novel_NIR_8333	chr17	27854533	27855539	-	27853449	27855539	A3SS	ENSMUST00000114881.9	novel	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	18	0	18	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000052146.17	Rps10	chr17	protein_coding	ribosomal protein S10
novel_NIR_8334	chr17	27854837	27855539	-	27853449	27855539	A3SS	ENSMUST00000114881.9	novel	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.18	4	18	4	18	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000052146.17	Rps10	chr17	protein_coding	ribosomal protein S10
novel_NIR_8335	chr17	28005239	28012883	-	27987213	28012883	A3SS	ENSMUST00000233131.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	4	0	4	0	y	ENSMUSG00000056692.14	Ilrun	chr17	protein_coding	inflammation and lipid regulator with UBA-like and NBR1-like domains
novel_NIR_8336	chr17	28059179	28059438	+	28059337	28059438	A5SS	ENSMUST00000233657.2	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.89	8	1	8	1	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	8	0	8	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.80	4	1	4	1	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	ENSMUSG00000024217.11	Snrpc	chr17	protein_coding	U1 small nuclear ribonucleoprotein C
novel_NIR_8337	chr17	28127217	28127966	-	28127217	28127744	A5SS	ENSMUST00000233681.2	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	5	0	5	n	1.00	2	0	2	0	y	ENSMUSG00000024218.14	Taf11	chr17	protein_coding	TATA-box binding protein associated factor 11
novel_NIR_8338	chr17	28127217	28127966	-	28127217	28127755	A5SS	ENSMUST00000114848.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	ENSMUSG00000024218.14	Taf11	chr17	protein_coding	TATA-box binding protein associated factor 11
novel_NIR_8339	chr17	28420414	28421409	+	28420414	28422060	A3SS	ENSMUST00000233841.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024220.15	Zfp523	chr17	protein_coding	zinc finger protein 523
novel_NIR_8340	chr17	28517453	28517594	+	28517453	28517558	A3SS	ENSMUST00000002320.16	novel	0.00	0	18	0	18	n	0.00	0	15	0	15	n	0.00	0	18	0	18	n	0.00	0	22	0	22	n	0.00	0	20	0	20	n	0.00	0	16	0	16	n	0.00	0	17	0	17	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.20	3	12	3	12	y	ENSMUSG00000002250.17	Ppard	chr17	protein_coding	peroxisome proliferator activator receptor delta
novel_NIR_8341	chr17	28517453	28517765	+	28517453	28517558	A3SS	ENSMUST00000002320.16	novel	0.00	0	18	0	18	n	0.06	1	15	1	15	n	0.00	0	18	0	18	n	0.00	0	22	0	22	n	0.00	0	20	0	20	n	0.16	3	16	3	16	y	0.11	2	17	2	17	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	ENSMUSG00000002250.17	Ppard	chr17	protein_coding	peroxisome proliferator activator receptor delta
novel_NIR_8342	chr17	28548496	28549504	+	28548496	28549543	A3SS	ENSMUST00000233842.2	novel	0.29	17	41	17	41	y	0.00	0	32	0	32	n	0.00	0	49	0	49	n	0.00	0	33	0	33	n	0.00	0	65	0	65	n	0.00	0	37	0	37	n	0.00	0	47	0	47	n	0.00	0	30	0	30	n	0.00	0	30	0	30	n	0.00	0	34	0	34	n	0.00	0	47	0	47	n	0.00	0	48	0	48	n	ENSMUSG00000037805.16	Rpl10a	chr17	protein_coding	ribosomal protein L10A
novel_NIR_8343	chr17	28548496	28549504	+	28548496	28549568	A3SS	ENSMUST00000232867.2	novel	1.00	17	0	17	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	11	0	11	n	-	-	-	-	-	-	0.00	0	15	0	15	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037805.16	Rpl10a	chr17	protein_coding	ribosomal protein L10A
novel_NIR_8344	chr17	28548496	28549504	+	28548496	28549804	A3SS	ENSMUST00000233895.2	novel	1.00	17	0	17	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037805.16	Rpl10a	chr17	protein_coding	ribosomal protein L10A
novel_NIR_8345	chr17	28548496	28549531	+	28548496	28549543	A3SS	ENSMUST00000233842.2	novel	0.00	0	41	0	41	n	0.22	9	32	9	32	y	0.00	0	49	0	49	n	0.27	12	33	12	33	y	0.03	2	65	2	65	n	0.00	0	37	0	37	n	0.00	0	47	0	47	n	0.19	7	30	7	30	y	0.00	0	30	0	30	n	0.00	0	34	0	34	n	0.00	0	47	0	47	n	0.00	0	48	0	48	n	ENSMUSG00000037805.16	Rpl10a	chr17	protein_coding	ribosomal protein L10A
novel_NIR_8346	chr17	28548496	28549531	+	28548496	28549568	A3SS	ENSMUST00000232867.2	novel	-	-	-	-	-	-	1.00	9	0	9	0	y	-	-	-	-	-	-	0.75	12	4	12	4	y	0.15	2	11	2	11	y	-	-	-	-	-	-	0.00	0	15	0	15	n	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037805.16	Rpl10a	chr17	protein_coding	ribosomal protein L10A
novel_NIR_8347	chr17	28548496	28549531	+	28548496	28549804	A3SS	ENSMUST00000233895.2	novel	-	-	-	-	-	-	1.00	9	0	9	0	y	-	-	-	-	-	-	1.00	12	0	12	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037805.16	Rpl10a	chr17	protein_coding	ribosomal protein L10A
novel_NIR_8348	chr17	28548496	28549546	+	28548496	28549543	A3SS	ENSMUST00000233842.2	novel	0.00	0	41	0	41	n	0.00	0	32	0	32	n	0.00	0	49	0	49	n	0.00	0	33	0	33	n	0.00	0	65	0	65	n	0.00	0	37	0	37	n	0.00	0	47	0	47	n	0.00	0	30	0	30	n	0.32	14	30	14	30	y	0.33	17	34	17	34	y	0.00	0	47	0	47	n	0.00	0	48	0	48	n	ENSMUSG00000037805.16	Rpl10a	chr17	protein_coding	ribosomal protein L10A
novel_NIR_8349	chr17	28548496	28549546	+	28548496	28549568	A3SS	ENSMUST00000232867.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	11	0	11	n	-	-	-	-	-	-	0.00	0	15	0	15	n	-	-	-	-	-	-	1.00	14	0	14	0	y	1.00	17	0	17	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037805.16	Rpl10a	chr17	protein_coding	ribosomal protein L10A
novel_NIR_8350	chr17	28548496	28549546	+	28548496	28549804	A3SS	ENSMUST00000233895.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	14	0	14	0	y	1.00	17	0	17	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037805.16	Rpl10a	chr17	protein_coding	ribosomal protein L10A
novel_NIR_8351	chr17	28552620	28552765	-	28552648	28552765	A3SS	ENSMUST00000146668.9	novel	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.43	3	4	3	4	y	ENSMUSG00000002249.22	Tead3	chr17	protein_coding	TEA domain family member 3
novel_NIR_8352	chr17	28647440	28647969	-	28647440	28647552	5pMXE	ENSMUST00000143685.3	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024222.18	Fkbp5	chr17	protein_coding	FK506 binding protein 5
novel_NIR_8353	chr17	28648332	28656966	-	28653332	28656966	3pMXE	ENSMUST00000233747.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.29	2	5	2	5	y	-	-	-	-	-	-	0.75	6	2	6	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000024222.18	Fkbp5	chr17	protein_coding	FK506 binding protein 5
novel_NIR_8354	chr17	28652292	28656966	-	28653332	28656966	3pMXE	ENSMUST00000233747.2	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.57	4	3	4	3	y	0.17	1	5	1	5	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024222.18	Fkbp5	chr17	protein_coding	FK506 binding protein 5
novel_NIR_8355	chr17	28660027	28660204	-	28660027	28660514	A5SS	ENSMUST00000153744.2	novel	0.18	2	9	2	9	y	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.12	2	15	2	15	n	0.00	0	6	0	6	n	0.13	4	26	4	26	n	0.00	0	12	0	12	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	ENSMUSG00000024222.18	Fkbp5	chr17	protein_coding	FK506 binding protein 5
novel_NIR_8356	chr17	28660027	28660204	-	28660027	28706879	A5SS	ENSMUST00000114792.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024222.18	Fkbp5	chr17	protein_coding	FK506 binding protein 5
novel_NIR_8357	chr17	28660027	28660204	-	28660027	28730059	A5SS	ENSMUST00000233102.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024222.18	Fkbp5	chr17	protein_coding	FK506 binding protein 5
novel_NIR_8358	chr17	28660027	28665589	-	28660027	28660514	5pMXE	ENSMUST00000153744.2	novel	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.25	4	12	4	12	y	0.38	3	5	3	5	y	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	26	0	26	n	0.00	0	12	0	12	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.33	1	2	1	2	n	0.00	0	8	0	8	n	ENSMUSG00000024222.18	Fkbp5	chr17	protein_coding	FK506 binding protein 5
novel_NIR_8359	chr17	28660027	28665589	-	28660027	28706879	A5SS	ENSMUST00000114792.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000024222.18	Fkbp5	chr17	protein_coding	FK506 binding protein 5
novel_NIR_8360	chr17	28660027	28665589	-	28660027	28730059	A5SS	ENSMUST00000233102.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000024222.18	Fkbp5	chr17	protein_coding	FK506 binding protein 5
novel_NIR_8361	chr17	28660027	28666901	-	28660027	28706879	A5SS	ENSMUST00000114792.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000024222.18	Fkbp5	chr17	protein_coding	FK506 binding protein 5
novel_NIR_8362	chr17	28660027	28666901	-	28660027	28730059	A5SS	ENSMUST00000233102.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000024222.18	Fkbp5	chr17	protein_coding	FK506 binding protein 5
novel_NIR_8363	chr17	28671131	28671386	+	28671131	28673790	A3SS	ENSMUST00000232983.2	novel	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.33	1	2	1	2	n	0.18	3	14	3	14	y	0.00	0	3	0	3	n	0.18	6	27	6	27	y	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.17	1	5	1	5	n	0.06	1	15	1	15	n	0.17	1	5	1	5	n	ENSMUSG00000117084.2	Gm22146	chr17	lncRNA	predicted gene, 22146
novel_NIR_8364	chr17	28911484	28911730	+	28910829	28911730	A5SS	ENSMUST00000114754.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.67	2	1	2	1	y	0.00	0	3	0	3	n	ENSMUSG00000053436.16	Mapk14	chr17	protein_coding	mitogen-activated protein kinase 14
novel_NIR_8365	chr17	28947445	28947808	+	28947445	28960762	A3SS	ENSMUST00000233095.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000053436.16	Mapk14	chr17	protein_coding	mitogen-activated protein kinase 14
novel_NIR_8366	chr17	28956064	28956585	+	28956064	28959718	A3SS	ENSMUST00000114758.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000053436.16	Mapk14	chr17	protein_coding	mitogen-activated protein kinase 14
novel_NIR_8367	chr17	28956064	28956585	+	28956064	28963957	A3SS	ENSMUST00000233250.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000053436.16	Mapk14	chr17	protein_coding	mitogen-activated protein kinase 14
novel_NIR_8368	chr17	29022899	29024903	+	29020335	29024903	A5SS	ENSMUST00000004985.11	novel	0.00	0	8	0	8	n	0.75	3	1	3	1	y	0.15	3	17	3	17	y	0.07	1	14	1	14	n	0.07	1	14	1	14	n	0.08	1	12	1	12	n	0.12	1	7	1	7	n	0.38	3	5	3	5	y	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.17	1	5	1	5	n	0.10	1	9	1	9	n	ENSMUSG00000063952.17	Brpf3	chr17	protein_coding	bromodomain and PHD finger containing, 3
novel_NIR_8369	chr17	29022899	29024903	+	29020803	29024903	A5SS	ENSMUST00000136233.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000063952.17	Brpf3	chr17	protein_coding	bromodomain and PHD finger containing, 3
novel_NIR_8370	chr17	29036167	29036467	+	29036167	29036445	A3SS	ENSMUST00000232705.2	novel	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.55	6	5	6	5	y	1.00	1	0	1	0	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.50	4	4	4	4	y	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.50	3	3	3	3	y	ENSMUSG00000063952.17	Brpf3	chr17	protein_coding	bromodomain and PHD finger containing, 3
novel_NIR_8371	chr17	29036167	29036629	+	29036167	29036445	A3SS	ENSMUST00000232705.2	novel	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.58	7	5	7	5	y	1.00	1	0	1	0	n	0.33	2	4	2	4	y	0.71	5	2	5	2	y	0.43	3	4	3	4	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.80	4	1	4	1	y	1.00	2	0	2	0	y	0.50	3	3	3	3	y	ENSMUSG00000063952.17	Brpf3	chr17	protein_coding	bromodomain and PHD finger containing, 3
novel_NIR_8372	chr17	29036167	29036629	+	29036167	29036460	A3SS	ENSMUST00000004985.11	novel	0.00	0	31	0	31	n	0.03	1	28	1	28	n	0.09	7	69	7	69	n	0.03	1	29	1	29	n	0.04	2	55	2	55	n	0.15	5	29	5	29	y	0.09	3	30	3	30	n	0.00	0	34	0	34	n	0.00	0	24	0	24	n	0.10	4	38	4	38	n	0.09	2	21	2	21	n	0.10	3	26	3	26	n	ENSMUSG00000063952.17	Brpf3	chr17	protein_coding	bromodomain and PHD finger containing, 3
novel_NIR_8373	chr17	29043040	29044243	+	29043040	29050288	A3SS	ENSMUST00000140973.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000063952.17	Brpf3	chr17	protein_coding	bromodomain and PHD finger containing, 3
novel_NIR_8374	chr17	29043040	29044243	+	29043040	29054736	A3SS	ENSMUST00000233520.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.33	1	2	1	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000063952.17	Brpf3	chr17	protein_coding	bromodomain and PHD finger containing, 3
novel_NIR_8375	chr17	29043040	29044243	+	29043040	29055484	A3SS	ENSMUST00000232997.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000063952.17	Brpf3	chr17	protein_coding	bromodomain and PHD finger containing, 3
novel_NIR_8376	chr17	29047415	29048051	+	29047415	29050288	A3SS	ENSMUST00000004985.11	novel	0.12	3	21	3	21	n	0.19	6	26	6	26	y	0.31	21	46	21	46	n	0.15	5	28	5	28	y	0.34	17	33	17	33	y	0.35	14	26	14	26	y	0.32	18	39	18	39	y	0.26	12	34	12	34	y	0.33	7	14	7	14	y	0.29	13	32	13	32	n	0.17	6	30	6	30	y	0.13	4	26	4	26	n	ENSMUSG00000063952.17	Brpf3	chr17	protein_coding	bromodomain and PHD finger containing, 3
novel_NIR_8377	chr17	29047415	29048051	+	29047415	29050292	A3SS	ENSMUST00000233709.2	novel	1.00	3	0	3	0	y	1.00	6	0	6	0	y	0.91	21	2	21	2	y	0.62	5	3	5	3	y	1.00	17	0	17	0	y	1.00	14	0	14	0	y	1.00	18	0	18	0	y	0.86	12	2	12	2	y	1.00	7	0	7	0	y	0.72	13	5	13	5	y	1.00	6	0	6	0	y	0.67	4	2	4	2	y	ENSMUSG00000063952.17	Brpf3	chr17	protein_coding	bromodomain and PHD finger containing, 3
novel_NIR_8378	chr17	29047415	29048051	+	29047415	29054736	A3SS	ENSMUST00000233701.2	novel	1.00	3	0	3	0	y	0.67	6	3	6	3	y	1.00	21	0	21	0	y	0.83	5	1	5	1	y	0.89	17	2	17	2	y	0.82	14	3	14	3	y	0.82	18	4	18	4	y	0.86	12	2	12	2	y	0.78	7	2	7	2	y	0.87	13	2	13	2	y	1.00	6	0	6	0	y	0.50	4	4	4	4	y	ENSMUSG00000063952.17	Brpf3	chr17	protein_coding	bromodomain and PHD finger containing, 3
novel_NIR_8379	chr17	29177531	29180388	+	29170997	29180388	A5SS	ENSMUST00000153462.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000005936.20	Kctd20	chr17	protein_coding	potassium channel tetramerisation domain containing 20
novel_NIR_8380	chr17	29177531	29180388	+	29171731	29180388	A5SS	ENSMUST00000117672.9	novel	0.00	0	5	0	5	n	0.67	2	1	2	1	y	0.00	0	3	0	3	n	0.12	1	7	1	7	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	ENSMUSG00000005936.20	Kctd20	chr17	protein_coding	potassium channel tetramerisation domain containing 20
novel_NIR_8381	chr17	29177531	29180388	+	29172317	29180388	A5SS	ENSMUST00000153831.9	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000005936.20	Kctd20	chr17	protein_coding	potassium channel tetramerisation domain containing 20
novel_NIR_8382	chr17	29177531	29180388	+	29177031	29180388	A5SS	ENSMUST00000233197.2	novel	0.00	0	10	0	10	n	0.25	2	6	2	6	y	0.00	0	15	0	15	n	0.10	1	9	1	9	n	0.00	0	22	0	22	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	ENSMUSG00000005936.20	Kctd20	chr17	protein_coding	potassium channel tetramerisation domain containing 20
novel_NIR_8383	chr17	29207235	29210277	-	29207235	29218983	A5SS	ENSMUST00000233510.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	ENSMUSG00000024006.18	Stk38	chr17	protein_coding	serine/threonine kinase 38
novel_NIR_8384	chr17	29211442	29217825	-	29211442	29217766	A5SS	ENSMUST00000233329.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024006.18	Stk38	chr17	protein_coding	serine/threonine kinase 38
novel_NIR_8385	chr17	29219118	29219798	-	29219118	29226382	A5SS	ENSMUST00000233441.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024006.18	Stk38	chr17	protein_coding	serine/threonine kinase 38
novel_NIR_8386	chr17	29219118	29219798	-	29219118	29226685	A5SS	ENSMUST00000119274.3	novel	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.14	2	12	2	12	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.20	1	4	1	4	n	0.00	0	14	0	14	n	0.25	2	6	2	6	y	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	ENSMUSG00000024006.18	Stk38	chr17	protein_coding	serine/threonine kinase 38
novel_NIR_8387	chr17	29219885	29226685	-	29219118	29226685	A3SS	ENSMUST00000119274.3	novel	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.26	5	14	5	14	y	0.20	2	8	2	8	y	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	ENSMUSG00000024006.18	Stk38	chr17	protein_coding	serine/threonine kinase 38
novel_NIR_8388	chr17	29251760	29255250	+	29251760	29257464	A3SS	ENSMUST00000233127.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000071172.14	Srsf3	chr17	protein_coding	serine and arginine-rich splicing factor 3
novel_NIR_8389	chr17	29313976	29317371	+	29310075	29317371	A5SS	ENSMUST00000119901.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023067.15	Cdkn1a	chr17	protein_coding	cyclin-dependent kinase inhibitor 1A (P21)
novel_NIR_8390	chr17	29496921	29512981	+	29487976	29512981	A5SS	ENSMUST00000235050.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.33	5	10	5	10	y	-	-	-	-	-	-	0.64	9	5	9	5	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000052712.18	BC004004	chr17	protein_coding	cDNA sequence BC004004
novel_NIR_8391	chr17	29551231	29551536	-	29551231	29551635	A5SS	ENSMUST00000234970.2	novel	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.00	0	22	0	22	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.29	7	17	7	17	y	0.00	0	9	0	9	n	0.00	0	15	0	15	n	ENSMUSG00000024012.19	Mtch1	chr17	protein_coding	mitochondrial carrier 1
novel_NIR_8392	chr17	29580131	29582682	+	29580131	29582685	A3SS	ENSMUST00000024810.8	novel	0.43	3	4	3	4	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	3	0	3	n	ENSMUSG00000024013.16	Fgd2	chr17	protein_coding	FYVE, RhoGEF and PH domain containing 2
novel_NIR_8393	chr17	29580131	29582682	+	29580131	29583885	A3SS	ENSMUST00000145124.3	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000024013.16	Fgd2	chr17	protein_coding	FYVE, RhoGEF and PH domain containing 2
novel_NIR_8394	chr17	29586312	29586895	+	29586383	29586895	A5SS	ENSMUST00000024810.8	novel	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.29	2	5	2	5	y	0.12	1	7	1	7	n	0.00	0	6	0	6	n	ENSMUSG00000024013.16	Fgd2	chr17	protein_coding	FYVE, RhoGEF and PH domain containing 2
novel_NIR_8395	chr17	29593952	29595806	+	29593952	29595802	A3SS	ENSMUST00000024810.8	novel	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	1	0	1	n	0.00	0	11	0	11	n	0.67	2	1	2	1	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	ENSMUSG00000024013.16	Fgd2	chr17	protein_coding	FYVE, RhoGEF and PH domain containing 2
novel_NIR_8396	chr17	29595916	29597287	+	29595948	29597287	A5SS	ENSMUST00000024810.8	novel	0.30	3	7	3	7	y	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	ENSMUSG00000024013.16	Fgd2	chr17	protein_coding	FYVE, RhoGEF and PH domain containing 2
novel_NIR_8397	chr17	29814897	29816719	+	29814897	29818813	A3SS	ENSMUST00000048677.9	novel	0.07	1	13	1	13	n	0.29	2	5	2	5	y	0.10	1	9	1	9	n	0.00	0	11	0	11	n	0.06	1	16	1	16	n	0.17	1	5	1	5	n	0.00	0	16	0	16	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.19	3	13	3	13	y	ENSMUSG00000042203.9	Tbc1d22b	chr17	protein_coding	TBC1 domain family, member 22B
novel_NIR_8398	chr17	29838565	29840483	+	29835202	29840483	A5SS	ENSMUST00000173449.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000090083.12	Rnf8	chr17	protein_coding	ring finger protein 8
novel_NIR_8399	chr17	29845828	29845921	+	29845816	29845921	A5SS	ENSMUST00000234362.2	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000090083.12	Rnf8	chr17	protein_coding	ring finger protein 8
novel_NIR_8400	chr17	29925723	29935908	-	29932130	29935908	3pMXE	ENSMUST00000174437.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	3	0	3	0	y	0.75	3	1	3	1	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000024018.19	Ccdc167	chr17	protein_coding	coiled-coil domain containing 167
novel_NIR_8401	chr17	30354633	30372277	+	30354633	30411537	A3SS	ENSMUST00000234671.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000044477.13	Zfand3	chr17	protein_coding	zinc finger, AN1-type domain 3
novel_NIR_8402	chr17	30354633	30372277	+	30355215	30372277	5pMXE	ENSMUST00000234902.2	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.20	2	8	2	8	y	0.00	0	6	0	6	n	-	-	-	-	-	-	ENSMUSG00000044477.13	Zfand3	chr17	protein_coding	zinc finger, AN1-type domain 3
novel_NIR_8403	chr17	30553306	30699988	-	30553306	30553837	5pMXE	ENSMUST00000237675.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000062202.15	Btbd9	chr17	protein_coding	BTB (POZ) domain containing 9
novel_NIR_8404	chr17	30553306	30699988	-	30553306	30631983	5pMXE	ENSMUST00000235643.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000062202.15	Btbd9	chr17	protein_coding	BTB (POZ) domain containing 9
novel_NIR_8405	chr17	30553306	30699988	-	30553306	30633504	5pMXE	ENSMUST00000235431.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000062202.15	Btbd9	chr17	protein_coding	BTB (POZ) domain containing 9
novel_NIR_8406	chr17	30553306	30699988	-	30553306	30664888	5pMXE	ENSMUST00000235555.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000062202.15	Btbd9	chr17	protein_coding	BTB (POZ) domain containing 9
novel_NIR_8407	chr17	30553306	30699988	-	30553306	30710626	A5SS	ENSMUST00000236153.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000062202.15	Btbd9	chr17	protein_coding	BTB (POZ) domain containing 9
novel_NIR_8408	chr17	30816620	30816779	-	30816616	30816779	A3SS	ENSMUST00000236995.2	novel	0.14	1	6	1	6	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.80	4	1	4	1	y	0.00	0	6	0	6	n	1.00	1	0	1	0	n	0.40	2	3	2	3	y	-	-	-	-	-	-	0.40	2	3	2	3	y	0.50	1	1	1	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	ENSMUSG00000024026.14	Glo1	chr17	protein_coding	glyoxalase 1
novel_NIR_8409	chr17	3132987	3134243	-	3129866	3134243	A3SS	ENSMUST00000127960.2	novel	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	ENSMUSG00000023795.17	Pisd-ps2	chr17	transcribed_unprocessed_pseudogene	phosphatidylserine decarboxylase, pseudogene 2
novel_NIR_8410	chr17	3132987	3134243	-	3131309	3134243	A3SS	ENSMUST00000184936.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000023795.17	Pisd-ps2	chr17	transcribed_unprocessed_pseudogene	phosphatidylserine decarboxylase, pseudogene 2
novel_NIR_8411	chr17	31373026	31374528	+	31373026	31377985	A3SS	ENSMUST00000236974.2	novel	0.00	0	10	0	10	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.17	2	10	2	10	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	15	0	15	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	ENSMUSG00000086010.9	Gm15318	chr17	lncRNA	predicted gene 15318
novel_NIR_8412	chr17	31373026	31374601	+	31373026	31374522	A3SS	ENSMUST00000148215.9	novel	0.00	0	17	0	17	n	0.05	1	19	1	19	n	-	-	-	-	-	-	0.07	1	13	1	13	n	0.00	0	18	0	18	n	0.00	0	3	0	3	n	0.08	1	11	1	11	n	0.17	2	10	2	10	y	0.00	0	20	0	20	n	0.06	1	16	1	16	n	0.15	2	11	2	11	y	0.00	0	15	0	15	n	ENSMUSG00000086010.9	Gm15318	chr17	lncRNA	predicted gene 15318
novel_NIR_8413	chr17	31373026	31374601	+	31373026	31377985	A3SS	ENSMUST00000236974.2	novel	0.00	0	10	0	10	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.09	1	10	1	10	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.14	1	6	1	6	n	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.06	1	15	1	15	n	0.33	2	4	2	4	y	0.00	0	9	0	9	n	ENSMUSG00000086010.9	Gm15318	chr17	lncRNA	predicted gene 15318
novel_NIR_8414	chr17	31378052	31379624	+	31378052	31380395	A3SS	ENSMUST00000146320.3	novel	0.00	0	28	0	28	n	0.00	0	20	0	20	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.20	3	12	3	12	y	0.14	1	6	1	6	n	0.05	1	18	1	18	n	0.00	0	19	0	19	n	0.00	0	10	0	10	n	0.07	1	14	1	14	n	ENSMUSG00000086010.9	Gm15318	chr17	lncRNA	predicted gene 15318
novel_NIR_8415	chr17	31378052	31379624	+	31378061	31379624	A5SS	ENSMUST00000237687.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.43	3	4	3	4	y	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.20	1	4	1	4	n	ENSMUSG00000086010.9	Gm15318	chr17	lncRNA	predicted gene 15318
novel_NIR_8416	chr17	31514887	31519264	+	31509054	31519264	A5SS	ENSMUST00000237389.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024036.17	Slc37a1	chr17	protein_coding	solute carrier family 37 (glycerol-3-phosphate transporter), member 1
novel_NIR_8417	chr17	31514887	31519264	+	31514728	31519264	A5SS	ENSMUST00000171233.9	novel	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024036.17	Slc37a1	chr17	protein_coding	solute carrier family 37 (glycerol-3-phosphate transporter), member 1
novel_NIR_8418	chr17	31514887	31519264	+	31515005	31519264	A5SS	ENSMUST00000237460.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024036.17	Slc37a1	chr17	protein_coding	solute carrier family 37 (glycerol-3-phosphate transporter), member 1
novel_NIR_8419	chr17	31514887	31519264	+	31515229	31519264	5pMXE	ENSMUST00000235972.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000024036.17	Slc37a1	chr17	protein_coding	solute carrier family 37 (glycerol-3-phosphate transporter), member 1
novel_NIR_8420	chr17	31514887	31519264	+	31515397	31519264	5pMXE	ENSMUST00000236251.2	novel	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000024036.17	Slc37a1	chr17	protein_coding	solute carrier family 37 (glycerol-3-phosphate transporter), member 1
novel_NIR_8421	chr17	31514887	31519264	+	31516043	31519264	5pMXE	ENSMUST00000236147.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024036.17	Slc37a1	chr17	protein_coding	solute carrier family 37 (glycerol-3-phosphate transporter), member 1
novel_NIR_8422	chr17	31514887	31519264	+	31516153	31519264	5pMXE	ENSMUST00000237932.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024036.17	Slc37a1	chr17	protein_coding	solute carrier family 37 (glycerol-3-phosphate transporter), member 1
novel_NIR_8423	chr17	31554532	31554708	+	31547203	31554708	A5SS	ENSMUST00000236251.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.67	2	1	2	1	y	0.50	1	1	1	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000024036.17	Slc37a1	chr17	protein_coding	solute carrier family 37 (glycerol-3-phosphate transporter), member 1
novel_NIR_8424	chr17	31635988	31639219	+	31605330	31639219	A5SS	ENSMUST00000236874.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041119.13	Pde9a	chr17	protein_coding	phosphodiesterase 9A
novel_NIR_8425	chr17	31635988	31639219	+	31633145	31639219	A5SS	ENSMUST00000134525.9	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041119.13	Pde9a	chr17	protein_coding	phosphodiesterase 9A
novel_NIR_8426	chr17	31678979	31679156	+	31678979	31680545	A3SS	ENSMUST00000124902.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041119.13	Pde9a	chr17	protein_coding	phosphodiesterase 9A
novel_NIR_8427	chr17	31678979	31679156	+	31678979	31680633	A3SS	ENSMUST00000235719.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041119.13	Pde9a	chr17	protein_coding	phosphodiesterase 9A
novel_NIR_8428	chr17	31731461	31731924	-	31731461	31737792	A5SS	ENSMUST00000167419.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000024037.14	Wdr4	chr17	protein_coding	WD repeat domain 4
novel_NIR_8429	chr17	31737691	31737792	-	31729620	31737792	A3SS	ENSMUST00000171291.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	2	2	2	2	y	1.00	2	0	2	0	y	ENSMUSG00000024037.14	Wdr4	chr17	protein_coding	WD repeat domain 4
novel_NIR_8430	chr17	31737691	31737792	-	31731461	31737792	A3SS	ENSMUST00000167419.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	5	0	5	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	ENSMUSG00000024037.14	Wdr4	chr17	protein_coding	WD repeat domain 4
novel_NIR_8431	chr17	31841492	31842353	-	31841492	31841987	5pMXE	ENSMUST00000143982.2	novel	1.00	4	0	4	0	y	1.00	11	0	11	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	13	0	13	0	y	1.00	10	0	10	0	y	1.00	17	0	17	0	y	1.00	7	0	7	0	y	1.00	6	0	6	0	y	1.00	6	0	6	0	y	1.00	2	0	2	0	y	1.00	10	0	10	0	y	ENSMUSG00000024039.16	Cbs	chr17	protein_coding	cystathionine beta-synthase
novel_NIR_8432	chr17	31845167	31846450	-	31845162	31846450	A3SS	ENSMUST00000128351.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000024039.16	Cbs	chr17	protein_coding	cystathionine beta-synthase
novel_NIR_8433	chr17	31852128	31855626	-	31852128	31855632	A5SS	ENSMUST00000155814.8	novel	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	ENSMUSG00000024039.16	Cbs	chr17	protein_coding	cystathionine beta-synthase
novel_NIR_8434	chr17	31852128	31856466	-	31852128	31855632	5pMXE	ENSMUST00000155814.8	novel	0.80	4	1	4	1	y	0.75	3	1	3	1	y	0.00	0	2	0	2	n	0.67	4	2	4	2	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.33	1	2	1	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	ENSMUSG00000024039.16	Cbs	chr17	protein_coding	cystathionine beta-synthase
novel_NIR_8435	chr17	31867868	31873953	-	31867868	31877627	A5SS	ENSMUST00000236475.2	novel	1.00	3	0	3	0	y	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.60	3	2	3	2	y	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.50	1	1	1	1	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.71	5	2	5	2	y	ENSMUSG00000061613.14	U2af1	chr17	protein_coding	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1
novel_NIR_8436	chr17	31867868	31873953	-	31867868;31870782	31870743;31873953	ES	ENSMUST00000238046.2	novel	1.00	3	0.0	3	0;0	y	1.00	2	0.0	2	0;0	y	0.00	0	1.0	0	0;2	n	-	-	-	-	-	-	1.00	3	0.0	3	0;0	y	1.00	1	0.0	1	0;0	n	0.00	0	2.0	0	0;4	n	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	1.00	5	0.0	5	0;0	y	ENSMUSG00000061613.14	U2af1	chr17	protein_coding	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1
novel_NIR_8437	chr17	31867868	31873953	-	31867868;31871542	31871476;31873953	ES	ENSMUST00000166526.9	novel	0.12	3	23.0	3	17;29	n	0.12	2	14.5	2	11;18	n	0.00	0	8.0	0	2;14	n	0.00	0	19.0	0	16;22	n	0.11	3	25.5	3	14;37	n	0.08	1	11.5	1	5;18	n	0.00	0	27.5	0	17;38	n	0.00	0	12.0	0	4;20	n	0.08	1	11.5	1	9;14	n	0.10	2	17.5	2	17;18	n	0.00	0	18.5	0	18;19	n	0.23	5	16.5	5	16;17	y	ENSMUSG00000061613.14	U2af1	chr17	protein_coding	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1
novel_NIR_8438	chr17	31867868	31873953	-	31871542	31873953	3pMXE	ENSMUST00000235600.2	novel	0.09	3	29	3	29	n	0.10	2	18	2	18	n	0.00	0	14	0	14	n	0.00	0	22	0	22	n	0.07	3	37	3	37	n	0.05	1	18	1	18	n	0.00	0	38	0	38	n	0.00	0	20	0	20	n	0.07	1	14	1	14	n	0.10	2	18	2	18	n	0.00	0	19	0	19	n	0.23	5	17	5	17	y	ENSMUSG00000061613.14	U2af1	chr17	protein_coding	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1
novel_NIR_8439	chr17	31874040	31874249	-	31874040	31875302	A5SS	ENSMUST00000236260.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000061613.14	U2af1	chr17	protein_coding	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1
novel_NIR_8440	chr17	31874040	31874516	-	31874040	31875302	A5SS	ENSMUST00000236260.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061613.14	U2af1	chr17	protein_coding	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1
novel_NIR_8441	chr17	31874040	31876977	-	31874040	31875302	5pMXE	ENSMUST00000236260.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000061613.14	U2af1	chr17	protein_coding	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1
novel_NIR_8442	chr17	32165785	32173784	-	32165785	32206322	A5SS	ENSMUST00000002145.12	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	ENSMUSG00000002076.13	Hsf2bp	chr17	protein_coding	heat shock transcription factor 2 binding protein
novel_NIR_8443	chr17	32165785	32173784	-	32165785	32226650	A5SS	ENSMUST00000237527.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	ENSMUSG00000002076.13	Hsf2bp	chr17	protein_coding	heat shock transcription factor 2 binding protein
novel_NIR_8444	chr17	3218414	3219605	+	3218414	3219602	A3SS	ENSMUST00000076734.8	novel	0.21	3	11	3	11	y	0.07	1	13	1	13	n	0.41	7	10	7	10	y	0.36	5	9	5	9	y	0.04	1	24	1	24	n	0.22	2	7	2	7	y	0.19	5	21	5	21	y	0.33	4	8	4	8	y	0.09	1	10	1	10	n	0.17	3	15	3	15	y	0.00	0	5	0	5	n	0.23	3	10	3	10	y	ENSMUSG00000046201.10	Scaf8	chr17	protein_coding	SR-related CTD-associated factor 8
novel_NIR_8445	chr17	3221495	3227365	+	3221495	3227368	A3SS	ENSMUST00000076734.8	novel	0.12	2	14	2	14	n	0.00	0	6	0	6	n	0.21	6	22	6	22	y	0.18	3	14	3	14	y	0.05	1	18	1	18	n	0.31	4	9	4	9	y	0.06	1	15	1	15	n	0.20	4	16	4	16	y	0.00	0	17	0	17	n	0.13	3	20	3	20	n	0.17	2	10	2	10	y	0.08	2	22	2	22	n	ENSMUSG00000046201.10	Scaf8	chr17	protein_coding	SR-related CTD-associated factor 8
novel_NIR_8446	chr17	32443919	32444550	-	32443960	32444550	A3SS	ENSMUST00000125899.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000024002.19	Brd4	chr17	protein_coding	bromodomain containing 4
novel_NIR_8447	chr17	32448709	32461220	-	32448709	32471971	A5SS	ENSMUST00000003726.16	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024002.19	Brd4	chr17	protein_coding	bromodomain containing 4
novel_NIR_8448	chr17	32448709	32461220	-	32448709	32502833	A5SS	ENSMUST00000235598.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024002.19	Brd4	chr17	protein_coding	bromodomain containing 4
novel_NIR_8449	chr17	32448709	32461220	-	32448709	32503037	A5SS	ENSMUST00000237692.2	novel	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000024002.19	Brd4	chr17	protein_coding	bromodomain containing 4
novel_NIR_8450	chr17	32448709	32461220	-	32448709	32503492	A5SS	ENSMUST00000127893.8	novel	0.17	1	5	1	5	n	-	-	-	-	-	-	0.25	2	6	2	6	y	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.00	0	7	0	7	n	ENSMUSG00000024002.19	Brd4	chr17	protein_coding	bromodomain containing 4
novel_NIR_8451	chr17	3248498	3264190	+	3248498	3281510	A3SS	ENSMUST00000231685.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	ENSMUSG00000116858.2	Gm49797	chr17	lncRNA	predicted gene, 49797
novel_NIR_8452	chr17	3248498	3308013	+	3248498;3281591	3281510;3308013	ES	ENSMUST00000231685.2	novel	1.00	6	0.0	6	0;0	y	1.00	4	0.0	4	0;0	y	0.86	9	1.5	9	2;1	y	0.94	8	0.5	8	1;0	y	1.00	7	0.0	7	0;0	y	1.00	3	0.0	3	0;0	y	1.00	9	0.0	9	0;0	y	1.00	5	0.0	5	0;0	y	1.00	4	0.0	4	0;0	y	1.00	5	0.0	5	0;0	y	1.00	6	0.0	6	0;0	y	0.95	9	0.5	9	1;0	y	ENSMUSG00000116858.2	Gm49797	chr17	lncRNA	predicted gene, 49797
novel_NIR_8453	chr17	32532735	32533085	-	32532236	32533085	A3SS	ENSMUST00000237381.2	novel	0.00	0	13	0	13	n	0.18	2	9	2	9	y	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	19	0	19	n	0.00	0	8	0	8	n	0.00	0	19	0	19	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	ENSMUSG00000024045.7	Akap8	chr17	protein_coding	A kinase (PRKA) anchor protein 8
novel_NIR_8454	chr17	32540965	32542085	-	32540965	32551785	A5SS	ENSMUST00000235724.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000002625.11	Akap8l	chr17	protein_coding	A kinase (PRKA) anchor protein 8-like
novel_NIR_8455	chr17	32541000	32551453	-	32540995	32551453	A3SS	ENSMUST00000237879.2	novel	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000002625.11	Akap8l	chr17	protein_coding	A kinase (PRKA) anchor protein 8-like
novel_NIR_8456	chr17	32551506	32551785	-	32540965	32551785	A3SS	ENSMUST00000235724.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000002625.11	Akap8l	chr17	protein_coding	A kinase (PRKA) anchor protein 8-like
novel_NIR_8457	chr17	32579731	32580435	-	32578468	32580435	A3SS	ENSMUST00000170617.8	novel	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.22	2	7	2	7	y	ENSMUSG00000024050.19	Wiz	chr17	protein_coding	widely-interspaced zinc finger motifs
novel_NIR_8458	chr17	32587121	32597814	-	32587121	32588261	A5SS&ES	ENSMUST00000236409.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024050.19	Wiz	chr17	protein_coding	widely-interspaced zinc finger motifs
novel_NIR_8459	chr17	32587121	32597814	-	32587121	32600058	A5SS	ENSMUST00000163107.9	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000024050.19	Wiz	chr17	protein_coding	widely-interspaced zinc finger motifs
novel_NIR_8460	chr17	32587121	32597814	-	32587121	32606547	A5SS	ENSMUST00000087703.12	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000024050.19	Wiz	chr17	protein_coding	widely-interspaced zinc finger motifs
novel_NIR_8461	chr17	32597103	32597814	-	32597472	32597814	A3SS	ENSMUST00000170617.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024050.19	Wiz	chr17	protein_coding	widely-interspaced zinc finger motifs
novel_NIR_8462	chr17	32725626	32725868	+	32725138	32725868	A5SS	ENSMUST00000237003.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000091586.3	Cyp4f17	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 17
novel_NIR_8463	chr17	32725626	32725868	+	32725552	32725868	A5SS	ENSMUST00000235238.2	novel	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	19	0	19	n	0.00	0	16	0	16	n	0.00	0	22	0	22	n	0.00	0	15	0	15	n	0.09	1	10	1	10	n	0.00	0	13	0	13	n	0.18	2	9	2	9	y	0.00	0	18	0	18	n	0.00	0	15	0	15	n	0.00	0	23	0	23	n	ENSMUSG00000091586.3	Cyp4f17	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 17
novel_NIR_8464	chr17	32726066	32728278	+	32726082	32728278	A5SS	ENSMUST00000236129.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000091586.3	Cyp4f17	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 17
novel_NIR_8465	chr17	32741213	32742001	+	32741213	32742976	A3SS	ENSMUST00000237003.2	novel	0.00	0	23	0	23	n	0.00	0	5	0	5	n	0.00	0	44	0	44	n	0.00	0	18	0	18	n	0.05	2	37	2	37	n	0.04	1	23	1	23	n	0.10	2	18	2	18	n	0.19	3	13	3	13	y	0.00	0	21	0	21	n	0.00	0	18	0	18	n	0.00	0	22	0	22	n	0.00	0	29	0	29	n	ENSMUSG00000091586.3	Cyp4f17	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 17
novel_NIR_8466	chr17	32747085	32747691	+	32747085;32747332	32747250;32747691	ES	ENSMUST00000237003.2	novel	0.37	9	15.5	9	23;8	y	0.25	3	9.0	3	10;8	y	0.30	9	21.0	9	26;16	y	0.16	3	15.5	3	16;15	y	0.35	12	22.0	12	24;20	y	0.35	9	16.5	9	18;15	y	0.35	12	22.5	12	27;18	y	0.35	8	15.0	8	20;10	y	0.35	8	15.0	8	16;14	y	0.45	16	19.5	16	30;9	y	0.31	9	20.5	9	29;12	y	0.29	5	12.0	5	12;12	y	ENSMUSG00000091586.3	Cyp4f17	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 17
novel_NIR_8467	chr17	32747128	32747691	+	32747332	32747691	A5SS&ES	ENSMUST00000237003.2	novel	0.27	3	8	3	8	y	0.00	0	8	0	8	n	0.20	4	16	4	16	y	0.00	0	15	0	15	n	0.00	0	20	0	20	n	0.12	2	15	2	15	n	0.05	1	18	1	18	n	0.09	1	10	1	10	n	0.22	4	14	4	14	y	0.31	4	9	4	9	y	0.08	1	12	1	12	n	0.00	0	12	0	12	n	ENSMUSG00000091586.3	Cyp4f17	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 17
novel_NIR_8468	chr17	32747337	32747691	+	32747332	32747691	A5SS	ENSMUST00000237003.2	novel	0.47	7	8	7	8	y	0.00	0	8	0	8	n	0.45	13	16	13	16	y	0.40	10	15	10	15	y	0.26	7	20	7	20	y	0.00	0	15	0	15	n	0.00	0	18	0	18	n	0.29	4	10	4	10	y	0.00	0	14	0	14	n	0.50	9	9	9	9	y	0.43	9	12	9	12	y	0.14	2	12	2	12	n	ENSMUSG00000091586.3	Cyp4f17	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 17
novel_NIR_8469	chr17	32905231	32914248	+	32905231	32916747	A3SS	ENSMUST00000163907.2	novel	0.50	1	1	1	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000073424.10	Cyp4f15	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 15
novel_NIR_8470	chr17	32909762	32916747	+	32905231	32916747	A5SS	ENSMUST00000163907.2	novel	0.50	1	1	1	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000073424.10	Cyp4f15	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 15
novel_NIR_8471	chr17	32911659	32916747	+	32905231	32916747	A5SS	ENSMUST00000163907.2	novel	0.95	19	1	19	1	y	0.82	14	3	14	3	y	1.00	3	0	3	0	y	1.00	23	0	23	0	y	0.95	21	1	21	1	y	1.00	3	0	3	0	y	1.00	24	0	24	0	y	1.00	8	0	8	0	y	1.00	19	0	19	0	y	1.00	32	0	32	0	y	1.00	12	0	12	0	y	1.00	23	0	23	0	y	ENSMUSG00000073424.10	Cyp4f15	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 15
novel_NIR_8472	chr17	33135860	33135963	-	33135860	33136119	A5SS	ENSMUST00000234797.2	novel	0.00	0	11	0	11	n	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	13	0	13	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	12	0	12	n	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.00	0	17	0	17	n	ENSMUSG00000024292.16	Cyp4f14	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 14
novel_NIR_8473	chr17	33135860	33135963	-	33135860	33136277	A5SS	ENSMUST00000235058.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	6	0	6	n	ENSMUSG00000024292.16	Cyp4f14	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 14
novel_NIR_8474	chr17	33135863	33136306	-	33135863	33136277	5pMXE	ENSMUST00000234759.2	novel	0.25	1	3	1	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	6	3	6	3	y	0.43	3	4	3	4	y	0.50	2	2	2	2	y	0.00	0	5	0	5	n	ENSMUSG00000024292.16	Cyp4f14	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 14
novel_NIR_8475	chr17	33151656	33165763	-	33151656	33157046	A5SS&ES	ENSMUST00000141325.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.50	4	4	4	4	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	ENSMUSG00000024055.16	Cyp4f13	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 13
novel_NIR_8476	chr17	33151656	33165763	-	33151656	33165779	A5SS	ENSMUST00000234946.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.80	4	1	4	1	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	ENSMUSG00000024055.16	Cyp4f13	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 13
novel_NIR_8477	chr17	33170883	33176623	-	33170883	33171204	A5SS&ES	ENSMUST00000126790.3	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024295.10	Cyp4f41-ps	chr17	transcribed_unprocessed_pseudogene	cytochrome P450, family 4, subfamily f, polypeptide 41 pseudogene
novel_NIR_8478	chr17	33170883	33176623	-	33175277	33176623	3pMXE	ENSMUST00000234619.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024295.10	Cyp4f41-ps	chr17	transcribed_unprocessed_pseudogene	cytochrome P450, family 4, subfamily f, polypeptide 41 pseudogene
novel_NIR_8479	chr17	33176991	33179549	-	33170794	33179549	A3SS	ENSMUST00000234360.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024295.10	Cyp4f41-ps	chr17	transcribed_unprocessed_pseudogene	cytochrome P450, family 4, subfamily f, polypeptide 41 pseudogene
novel_NIR_8480	chr17	33176991	33179549	-	33176848	33179549	A3SS	ENSMUST00000234619.2	novel	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024295.10	Cyp4f41-ps	chr17	transcribed_unprocessed_pseudogene	cytochrome P450, family 4, subfamily f, polypeptide 41 pseudogene
novel_NIR_8481	chr17	33580232	33605396	-	33580232;33589507	33589370;33605396	ES	ENSMUST00000173151.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1.0	0	0;2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	ENSMUSG00000055240.18	Zfp101	chr17	protein_coding	zinc finger protein 101
novel_NIR_8482	chr17	33580232	33605396	-	33601560	33605396	3pMXE	ENSMUST00000167107.10	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.25	1	3	1	3	n	ENSMUSG00000055240.18	Zfp101	chr17	protein_coding	zinc finger protein 101
novel_NIR_8483	chr17	33580232	33605396	-	33604742	33605396	3pMXE	ENSMUST00000183047.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000055240.18	Zfp101	chr17	protein_coding	zinc finger protein 101
novel_NIR_8484	chr17	33764031	33764289	+	33764031	33764278	A3SS	ENSMUST00000173931.8	novel	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.25	2	6	2	6	y	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	ENSMUSG00000024299.18	Adamts10	chr17	protein_coding	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10
novel_NIR_8485	chr17	33764031	33764289	+	33764031	33764516	A3SS	ENSMUST00000174104.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024299.18	Adamts10	chr17	protein_coding	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10
novel_NIR_8486	chr17	33859503	33867787	-	33865719	33867787	3pMXE	ENSMUST00000114385.9	novel	0.00	0	29	0	29	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.17	4	19	4	19	y	0.00	0	11	0	11	n	0.00	0	22	0	22	n	0.00	0	9	0	9	n	0.00	0	16	0	16	n	0.00	0	17	0	17	n	0.00	0	15	0	15	n	0.00	0	13	0	13	n	ENSMUSG00000059208.16	Hnrnpm	chr17	protein_coding	heterogeneous nuclear ribonucleoprotein M
novel_NIR_8487	chr17	33861180	33863823	+	33861180;33863722	33863665;33863823	ES	ENSMUST00000163245.2	novel	0.00	0	7.0	0	8;6	n	0.00	0	5.5	0	3;8	n	0.00	0	5.0	0	5;5	n	-	-	-	-	-	-	0.00	0	2.5	0	3;2	n	0.00	0	0.5	0	0;1	n	0.00	0	2.5	0	2;3	n	0.00	0	2.0	0	2;2	n	0.00	0	1.0	0	0;2	n	0.00	0	3.0	0	3;3	n	0.33	2	4.0	2	3;5	y	0.00	0	1.0	0	2;0	n	ENSMUSG00000092412.2	Gm20507	chr17	lncRNA	predicted gene 20507
novel_NIR_8488	chr17	33864409	33864518	+	33864434	33864518	A5SS	ENSMUST00000163245.2	novel	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.29	2	5	2	5	y	ENSMUSG00000092412.2	Gm20507	chr17	lncRNA	predicted gene 20507
novel_NIR_8489	chr17	33869371	33877362	-	33867838	33877362	A3SS	ENSMUST00000130946.8	novel	1.00	19	0	19	0	y	1.00	17	0	17	0	y	1.00	22	0	22	0	y	0.93	25	2	25	2	y	1.00	16	0	16	0	y	1.00	4	0	4	0	y	1.00	13	0	13	0	y	1.00	11	0	11	0	y	1.00	10	0	10	0	y	1.00	21	0	21	0	y	1.00	18	0	18	0	y	1.00	13	0	13	0	y	ENSMUSG00000059208.16	Hnrnpm	chr17	protein_coding	heterogeneous nuclear ribonucleoprotein M
novel_NIR_8490	chr17	33907216	33910945	-	33907216	33910993	A5SS	ENSMUST00000066121.13	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.33	2	4	2	4	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000079557.12	Marchf2	chr17	protein_coding	membrane associated ring-CH-type finger 2
novel_NIR_8491	chr17	33907216;33911141	33910945;33915011	-	33907216	33915011	cassetteExon	ENSMUST00000172934.8	novel	-	-	-	-	-	-	1.00	2.0	0	2;2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	0.5	0	0;1	0	n	-	-	-	-	-	-	1.00	1.0	0	2;0	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000079557.12	Marchf2	chr17	protein_coding	membrane associated ring-CH-type finger 2
novel_NIR_8492	chr17	33911141	33915011	-	33911103	33915011	A3SS	ENSMUST00000173454.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000079557.12	Marchf2	chr17	protein_coding	membrane associated ring-CH-type finger 2
novel_NIR_8493	chr17	33911141	33915011	-	33911177	33915011	A3SS	ENSMUST00000173015.8	novel	0.00	0	12	0	12	n	0.17	2	10	2	10	y	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.25	1	3	1	3	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	ENSMUSG00000079557.12	Marchf2	chr17	protein_coding	membrane associated ring-CH-type finger 2
novel_NIR_8494	chr17	33968930	33979197	-	33968876	33979197	A3SS	ENSMUST00000173860.8	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.56	5	4	5	4	y	0.00	0	11	0	11	n	0.14	1	6	1	6	n	-	-	-	-	-	-	0.60	6	4	6	4	y	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.36	5	9	5	9	y	ENSMUSG00000077450.14	Rab11b	chr17	protein_coding	RAB11B, member RAS oncogene family
novel_NIR_8495	chr17	33968930	33979197	-	33968893	33979197	A3SS	ENSMUST00000174744.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.67	6	3	6	3	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	ENSMUSG00000077450.14	Rab11b	chr17	protein_coding	RAB11B, member RAS oncogene family
novel_NIR_8496	chr17	33968951	33979027	-	33968951	33979017	A5SS	ENSMUST00000235046.2	novel	0.29	2	5	2	5	y	0.50	1	1	1	1	n	0.15	2	11	2	11	y	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.60	3	2	3	2	y	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.25	1	3	1	3	n	ENSMUSG00000077450.14	Rab11b	chr17	protein_coding	RAB11B, member RAS oncogene family
novel_NIR_8497	chr17	33968951	33979217	-	33968951	33979017	5pMXE	ENSMUST00000235046.2	novel	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.21	3	11	3	11	y	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	ENSMUSG00000077450.14	Rab11b	chr17	protein_coding	RAB11B, member RAS oncogene family
novel_NIR_8498	chr17	34043654;34044691	34044579;34048641	+	34043654	34048641	cassetteExon	ENSMUST00000173132.8	novel	0.21	7.0	27	6;8	27	y	0.15	5.5	31	7;4	31	y	0.53	8.0	7	6;10	7	y	0.06	1.5	22	3;0	22	n	0.15	5.5	30	6;5	30	y	0.00	0.0	12	0;0	12	n	0.24	8.5	27	14;3	27	y	0.00	0.0	14	0;0	14	n	0.18	4.5	21	5;4	21	y	0.13	5.0	33	9;1	33	n	0.24	8.5	27	11;6	27	y	0.13	5.5	37	4;7	37	n	ENSMUSG00000041881.14	Ndufa7	chr17	protein_coding	NADH:ubiquinone oxidoreductase subunit A7
novel_NIR_8499	chr17	34043698	34044575	+	34043791	34044575	A5SS	ENSMUST00000174498.2	novel	0.33	1	2	1	2	n	0.29	2	5	2	5	y	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.29	2	5	2	5	y	0.50	3	3	3	3	y	1.00	1	0	1	0	n	0.33	2	4	2	4	y	0.00	0	1	0	1	n	0.50	1	1	1	1	n	ENSMUSG00000041881.14	Ndufa7	chr17	protein_coding	NADH:ubiquinone oxidoreductase subunit A7
novel_NIR_8500	chr17	34043698	34044575	+	34044105	34044575	5pMXE	ENSMUST00000173807.8	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	ENSMUSG00000041881.14	Ndufa7	chr17	protein_coding	NADH:ubiquinone oxidoreductase subunit A7
novel_NIR_8501	chr17	34043698	34048641	+	34044724	34048641	5pMXE	ENSMUST00000173175.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.29	2	5	2	5	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000041881.14	Ndufa7	chr17	protein_coding	NADH:ubiquinone oxidoreductase subunit A7
novel_NIR_8502	chr17	34043698	34048641	+	34046882	34048641	A5SS&ES	ENSMUST00000234470.2	novel	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.40	2	3	2	3	y	0.33	2	4	2	4	y	0.00	0	4	0	4	n	ENSMUSG00000041881.14	Ndufa7	chr17	protein_coding	NADH:ubiquinone oxidoreductase subunit A7
novel_NIR_8503	chr17	34043698	34048641	+	34048285	34048641	5pMXE	ENSMUST00000174847.8	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.50	3	3	3	3	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000041881.14	Ndufa7	chr17	protein_coding	NADH:ubiquinone oxidoreductase subunit A7
novel_NIR_8504	chr17	34043698	34048641	+	34048369	34048641	5pMXE	ENSMUST00000173556.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000041881.14	Ndufa7	chr17	protein_coding	NADH:ubiquinone oxidoreductase subunit A7
novel_NIR_8505	chr17	34044202	34044575	+	34043791	34044575	A5SS	ENSMUST00000174498.2	novel	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000041881.14	Ndufa7	chr17	protein_coding	NADH:ubiquinone oxidoreductase subunit A7
novel_NIR_8506	chr17	34044202	34044575	+	34044105	34044575	A5SS	ENSMUST00000173807.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000041881.14	Ndufa7	chr17	protein_coding	NADH:ubiquinone oxidoreductase subunit A7
novel_NIR_8507	chr17	34044691	34048641	+	34044724	34048641	A5SS	ENSMUST00000173175.8	novel	1.00	8	0	8	0	y	1.00	4	0	4	0	y	1.00	10	0	10	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	10	0	10	n	0.40	4	6	4	6	y	0.17	1	5	1	5	n	1.00	6	0	6	0	y	1.00	7	0	7	0	y	ENSMUSG00000041881.14	Ndufa7	chr17	protein_coding	NADH:ubiquinone oxidoreductase subunit A7
novel_NIR_8508	chr17	34044691	34048641	+	34046882	34048641	A5SS&ES	ENSMUST00000234470.2	novel	0.73	8	3	8	3	y	0.57	4	3	4	3	y	0.83	10	2	10	2	y	-	-	-	-	-	-	0.83	5	1	5	1	y	-	-	-	-	-	-	0.60	3	2	3	2	y	0.00	0	3	0	3	n	0.44	4	5	4	5	y	0.25	1	3	1	3	n	0.60	6	4	6	4	y	0.64	7	4	7	4	y	ENSMUSG00000041881.14	Ndufa7	chr17	protein_coding	NADH:ubiquinone oxidoreductase subunit A7
novel_NIR_8509	chr17	34044691	34048641	+	34048285	34048641	5pMXE	ENSMUST00000174847.8	novel	1.00	8	0	8	0	y	0.80	4	1	4	1	y	0.91	10	1	10	1	y	0.00	0	2	0	2	n	0.62	5	3	5	3	y	0.00	0	1	0	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	0.50	1	1	1	1	n	1.00	6	0	6	0	y	1.00	7	0	7	0	y	ENSMUSG00000041881.14	Ndufa7	chr17	protein_coding	NADH:ubiquinone oxidoreductase subunit A7
novel_NIR_8510	chr17	34044691	34048641	+	34048369	34048641	5pMXE	ENSMUST00000173556.2	novel	1.00	8	0	8	0	y	1.00	4	0	4	0	y	1.00	10	0	10	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	6	0	6	0	y	1.00	7	0	7	0	y	ENSMUSG00000041881.14	Ndufa7	chr17	protein_coding	NADH:ubiquinone oxidoreductase subunit A7
novel_NIR_8511	chr17	34128073	34128155	-	34127560	34128155	A3SS	ENSMUST00000174321.2	novel	0.17	2	10	2	10	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.17	1	5	1	5	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	ENSMUSG00000092564.3	BC051226	chr17	lncRNA	cDNA sequence BC051226
novel_NIR_8512	chr17	34153981	34154111	+	34153981	34154108	A3SS	ENSMUST00000047503.16	novel	0.00	0	34	0	34	n	0.00	0	19	0	19	n	0.00	0	18	0	18	n	0.00	0	21	0	21	n	0.00	0	18	0	18	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.00	0	16	0	16	n	0.17	2	10	2	10	y	0.00	0	19	0	19	n	0.00	0	9	0	9	n	0.24	4	13	4	13	y	ENSMUSG00000041354.17	Rgl2	chr17	protein_coding	ral guanine nucleotide dissociation stimulator-like 2
novel_NIR_8513	chr17	34153981	34154111	+	34153981	34154144	A3SS	ENSMUST00000173284.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000041354.17	Rgl2	chr17	protein_coding	ral guanine nucleotide dissociation stimulator-like 2
novel_NIR_8514	chr17	34158792	34159026	-	34158792	34159271	A5SS	ENSMUST00000174426.2	novel	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000024309.16	Pfdn6	chr17	protein_coding	prefoldin subunit 6
novel_NIR_8515	chr17	34181159	34181390	+	34181159	34181397	A3SS	ENSMUST00000025178.17	novel	0.00	0	29	0	29	n	0.03	1	37	1	37	n	0.03	1	30	1	30	n	0.00	0	33	0	33	n	0.05	3	62	3	62	n	0.00	0	17	0	17	n	0.06	3	46	3	46	n	0.00	0	36	0	36	n	0.14	3	19	3	19	n	0.03	1	37	1	37	n	0.20	8	33	8	33	y	0.09	3	31	3	31	n	ENSMUSG00000024319.19	Vps52	chr17	protein_coding	VPS52 GARP complex subunit
novel_NIR_8516	chr17	34215381	34215590	-	34215450	34215590	A3SS	ENSMUST00000172912.8	novel	0.29	115	278	115	278	y	0.32	130	271	130	271	y	0.11	33	270	33	270	n	0.00	0	218	0	218	n	0.28	109	283	109	283	y	0.31	66	146	66	146	y	0.20	88	355	88	355	y	0.00	0	156	0	156	n	0.00	0	225	0	225	n	0.14	58	348	58	348	n	0.00	0	331	0	331	n	0.00	0	237	0	237	n	ENSMUSG00000061232.17	H2-K1	chr17	protein_coding	histocompatibility 2, K1, K region
novel_NIR_8517	chr17	34215443	34215590	-	34215450	34215590	A3SS	ENSMUST00000172912.8	novel	0.00	0	278	0	278	n	0.33	134	271	134	271	y	0.09	27	270	27	270	n	0.00	0	218	0	218	n	0.00	0	283	0	283	n	0.00	0	146	0	146	n	0.00	0	355	0	355	n	0.30	66	156	66	156	y	0.00	0	225	0	225	n	0.28	134	348	134	348	y	0.00	0	331	0	331	n	0.00	0	237	0	237	n	ENSMUSG00000061232.17	H2-K1	chr17	protein_coding	histocompatibility 2, K1, K region
novel_NIR_8518	chr17	34215450	34215801	-	34215477	34215801	A3SS	ENSMUST00000236740.2	novel	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.25	2	6	2	6	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	ENSMUSG00000061232.17	H2-K1	chr17	protein_coding	histocompatibility 2, K1, K region
novel_NIR_8519	chr17	34247729	34247827	-	34246814	34247827	A3SS	ENSMUST00000237448.2	novel	-	-	-	-	-	-	0.00	0	9	0	9	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000092595.3	Gm20427	chr17	lncRNA	predicted gene 20427
novel_NIR_8520	chr17	34249708	34249959	-	34249708	34250522	A5SS	ENSMUST00000173810.2	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	11	0	11	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000024327.17	Slc39a7	chr17	protein_coding	solute carrier family 39 (zinc transporter), member 7
novel_NIR_8521	chr17	34338874	34339836	-	34338874	34339169	5pMXE	ENSMUST00000154232.9	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.29	2	5	2	5	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000024335.21	Brd2	chr17	protein_coding	bromodomain containing 2
novel_NIR_8522	chr17	34338874	34339836	-	34338874	34339817	A5SS	ENSMUST00000237345.2	novel	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.40	2	3	2	3	y	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000024335.21	Brd2	chr17	protein_coding	bromodomain containing 2
novel_NIR_8523	chr17	34338874	34339836	-	34338874	34340457	A5SS	ENSMUST00000114242.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000024335.21	Brd2	chr17	protein_coding	bromodomain containing 2
novel_NIR_8524	chr17	34338874	34339836	-	34338874	34340835	A5SS	ENSMUST00000179722.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024335.21	Brd2	chr17	protein_coding	bromodomain containing 2
novel_NIR_8525	chr17	34338874	34339836	-	34338874	34341541	A5SS	ENSMUST00000177828.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024335.21	Brd2	chr17	protein_coding	bromodomain containing 2
novel_NIR_8526	chr17	34402718	34402944	-	34402718	34403130	A5SS	ENSMUST00000237228.2	novel	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000096727.4	Psmb9	chr17	protein_coding	proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)
novel_NIR_8527	chr17	34404771	34406209	-	34404771	34405865	5pMXE	ENSMUST00000173831.3	novel	0.67	2	1	2	1	y	0.25	1	3	1	3	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.62	5	3	5	3	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000096727.4	Psmb9	chr17	protein_coding	proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)
novel_NIR_8528	chr17	34845969	34847052	-	34845969	34846096	5pMXE	ENSMUST00000169287.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.50	1	1	1	1	n	0.00	0	5	0	5	n	0.75	3	1	3	1	y	0.00	0	1	0	1	n	ENSMUSG00000015474.17	Ppt2	chr17	protein_coding	palmitoyl-protein thioesterase 2
novel_NIR_8529	chr17	34845969	34847052	-	34845969	34846140	5pMXE	ENSMUST00000168709.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000092176.2	Gm20460	chr17	lncRNA	predicted gene 20460
novel_NIR_8530	chr17	34845969	34847052	-	34845969	34846150	5pMXE	ENSMUST00000168391.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000015474.17	Ppt2	chr17	protein_coding	palmitoyl-protein thioesterase 2
novel_NIR_8531	chr17	34845969	34847052	-	34845969	34846221	5pMXE	ENSMUST00000064953.15	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.60	3	2	3	2	y	-	-	-	-	-	-	ENSMUSG00000015474.17	Ppt2	chr17	protein_coding	palmitoyl-protein thioesterase 2
novel_NIR_8532	chr17	34845969	34847052	-	34845969	34846345	5pMXE	ENSMUST00000170345.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000015474.17	Ppt2	chr17	protein_coding	palmitoyl-protein thioesterase 2
novel_NIR_8533	chr17	34845969	34847052	-	34845969	34846907	5pMXE	ENSMUST00000166040.9	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000015474.17	Ppt2	chr17	protein_coding	palmitoyl-protein thioesterase 2
novel_NIR_8534	chr17	34845969	34856902	-	34845969	34846096	5pMXE	ENSMUST00000169287.2	novel	0.75	6	2	6	2	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.50	1	1	1	1	n	0.29	2	5	2	5	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000015474.17	Ppt2	chr17	protein_coding	palmitoyl-protein thioesterase 2
novel_NIR_8535	chr17	34845969	34856902	-	34845969	34846140	5pMXE	ENSMUST00000168709.3	novel	1.00	6	0	6	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000092176.2	Gm20460	chr17	lncRNA	predicted gene 20460
novel_NIR_8536	chr17	34845969	34856902	-	34845969	34846150	5pMXE	ENSMUST00000168391.9	novel	1.00	6	0	6	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000015474.17	Ppt2	chr17	protein_coding	palmitoyl-protein thioesterase 2
novel_NIR_8537	chr17	34845969	34856902	-	34845969	34846221	5pMXE	ENSMUST00000064953.15	novel	0.86	6	1	6	1	y	1.00	2	0	2	0	y	0.33	2	4	2	4	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000015474.17	Ppt2	chr17	protein_coding	palmitoyl-protein thioesterase 2
novel_NIR_8538	chr17	34845969	34856902	-	34845969	34846299	5pMXE	ENSMUST00000171121.9	novel	0.40	6	9	6	9	y	0.08	2	23	2	23	n	0.06	2	34	2	34	n	0.00	0	13	0	13	n	0.00	0	36	0	36	n	0.00	0	20	0	20	n	0.04	1	24	1	24	n	0.00	0	27	0	27	n	0.04	1	24	1	24	n	0.11	2	17	2	17	n	0.00	0	23	0	23	n	0.00	0	24	0	24	n	ENSMUSG00000015474.17	Ppt2	chr17	protein_coding	palmitoyl-protein thioesterase 2
novel_NIR_8539	chr17	34845969	34856902	-	34845969	34846345	5pMXE	ENSMUST00000170345.8	novel	1.00	6	0	6	0	y	1.00	2	0	2	0	y	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000015474.17	Ppt2	chr17	protein_coding	palmitoyl-protein thioesterase 2
novel_NIR_8540	chr17	34845969	34856902	-	34845969	34846907	5pMXE	ENSMUST00000166040.9	novel	0.86	6	1	6	1	y	0.50	2	2	2	2	y	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000015474.17	Ppt2	chr17	protein_coding	palmitoyl-protein thioesterase 2
novel_NIR_8541	chr17	34845969	34856902	-	34845969	34847092	5pMXE	ENSMUST00000167097.9	novel	0.15	6	33	6	33	y	0.12	2	15	2	15	n	0.11	2	16	2	16	n	0.00	0	33	0	33	n	0.00	0	30	0	30	n	0.00	0	9	0	9	n	0.03	1	29	1	29	n	0.00	0	13	0	13	n	0.04	1	24	1	24	n	0.04	2	44	2	44	n	0.00	0	26	0	26	n	0.00	0	27	0	27	n	ENSMUSG00000015474.17	Ppt2	chr17	protein_coding	palmitoyl-protein thioesterase 2
novel_NIR_8542	chr17	34863927	34864226	+	34863927	34864153	A3SS	ENSMUST00000174796.2	novel	1.00	6	0	6	0	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.50	1	1	1	1	n	0.57	4	3	4	3	y	0.00	0	3	0	3	n	0.80	4	1	4	1	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.75	3	1	3	1	y	ENSMUSG00000033739.9	Fkbpl	chr17	protein_coding	FK506 binding protein-like
novel_NIR_8543	chr17	34863927	34864226	+	34863927	34864219	A3SS	ENSMUST00000036720.9	novel	0.32	6	13	6	13	y	0.00	0	13	0	13	n	0.00	0	28	0	28	n	0.05	1	19	1	19	n	0.15	4	23	4	23	y	0.00	0	13	0	13	n	0.14	4	25	4	25	n	0.07	1	13	1	13	n	0.10	1	9	1	9	n	0.00	0	16	0	16	n	0.12	2	15	2	15	n	0.16	3	16	3	16	y	ENSMUSG00000033739.9	Fkbpl	chr17	protein_coding	FK506 binding protein-like
novel_NIR_8544	chr17	34937497	34937609	+	34937508	34937609	A5SS	ENSMUST00000238967.2	novel	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	20	0	20	n	0.00	0	9	0	9	n	0.00	0	28	0	28	n	0.40	2	3	2	3	y	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	ENSMUSG00000033327.19	Tnxb	chr17	protein_coding	tenascin XB
novel_NIR_8545	chr17	34937661	34937792	+	34937705	34937792	A5SS	ENSMUST00000238967.2	novel	0.00	0	11	0	11	n	0.00	0	19	0	19	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	21	0	21	n	0.00	0	7	0	7	n	0.33	2	4	2	4	y	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	ENSMUSG00000033327.19	Tnxb	chr17	protein_coding	tenascin XB
novel_NIR_8546	chr17	34949829	35030527	-	35030165	35030527	3pMXE	ENSMUST00000160528.8	novel	-	-	-	-	-	-	1.00	18	0	18	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	40	0	40	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	31	0	31	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	18	0	18	0	y	ENSMUSG00000015451.17	C4a	chr17	lncRNA	complement component 4A (Rodgers blood group)
novel_NIR_8547	chr17	34954460	34954679	-	34954581	34954679	A3SS	ENSMUST00000173057.2	novel	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.32	7	15	7	15	y	0.00	0	16	0	16	n	0.00	0	4	0	4	n	0.00	0	37	0	37	n	0.00	0	12	0	12	n	0.00	0	22	0	22	n	0.00	0	23	0	23	n	0.00	0	16	0	16	n	0.00	0	14	0	14	n	ENSMUSG00000073418.5	C4b	chr17	protein_coding	complement component 4B (Chido blood group)
novel_NIR_8548	chr17	34954581	34954702	-	34954581	34954679	A5SS	ENSMUST00000173057.2	novel	0.31	4	9	4	9	y	0.50	11	11	11	11	y	0.08	1	11	1	11	n	0.40	10	15	10	15	y	0.27	6	16	6	16	y	0.00	0	4	0	4	n	0.23	11	37	11	37	y	0.00	0	12	0	12	n	0.15	4	22	4	22	y	0.26	8	23	8	23	y	0.00	0	16	0	16	n	0.30	6	14	6	14	y	ENSMUSG00000073418.5	C4b	chr17	protein_coding	complement component 4B (Chido blood group)
novel_NIR_8549	chr17	34954581	34954759	-	34954581	34954679	A5SS	ENSMUST00000173057.2	novel	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.58	15	11	15	11	y	0.00	0	15	0	15	n	0.00	0	16	0	16	n	0.00	0	4	0	4	n	0.00	0	37	0	37	n	0.00	0	12	0	12	n	0.00	0	22	0	22	n	0.00	0	23	0	23	n	0.00	0	16	0	16	n	0.00	0	14	0	14	n	ENSMUSG00000073418.5	C4b	chr17	protein_coding	complement component 4B (Chido blood group)
novel_NIR_8550	chr17	35028585	35029088	-	35028585;35028953	35028870;35029088	ES	ENSMUST00000160679.8	novel	0.03	3	90.0	3	74;106	n	0.01	1	74.5	1	64;85	n	0.03	4	135.0	4	101;169	n	0.12	14	104.5	14	78;131	n	0.10	15	138.5	15	123;154	n	0.11	10	82.0	10	56;108	n	0.05	7	127.0	7	105;149	n	0.17	14	69.0	14	48;90	y	0.04	3	75.5	3	49;102	n	0.09	9	95.5	9	93;98	n	0.15	15	87.5	15	73;102	y	0.07	8	111.5	8	76;147	n	ENSMUSG00000015451.17	C4a	chr17	lncRNA	complement component 4A (Rodgers blood group)
novel_NIR_8551	chr17	35029603	35030091	-	35029353	35030091	A3SS	ENSMUST00000162133.8	novel	0.00	0	19	0	19	n	0.00	0	16	0	16	n	0.30	10	23	10	23	y	0.00	0	16	0	16	n	0.04	1	26	1	26	n	0.00	0	19	0	19	n	0.06	2	29	2	29	n	0.00	0	12	0	12	n	0.00	0	17	0	17	n	0.00	0	28	0	28	n	0.07	1	14	1	14	n	0.00	0	23	0	23	n	ENSMUSG00000015451.17	C4a	chr17	lncRNA	complement component 4A (Rodgers blood group)
novel_NIR_8552	chr17	35029603	35030091	-	35029577	35030091	A3SS	ENSMUST00000160679.8	novel	0.00	0	11	0	11	n	0.00	0	26	0	26	n	0.42	10	14	10	14	y	0.00	0	21	0	21	n	0.03	1	36	1	36	n	0.00	0	15	0	15	n	0.05	2	39	2	39	n	0.00	0	13	0	13	n	0.00	0	20	0	20	n	0.00	0	31	0	31	n	0.04	1	26	1	26	n	0.00	0	35	0	35	n	ENSMUSG00000015451.17	C4a	chr17	lncRNA	complement component 4A (Rodgers blood group)
novel_NIR_8553	chr17	35029738	35030091	-	35029577	35030091	A3SS	ENSMUST00000160679.8	novel	0.15	2	11	2	11	y	0.00	0	26	0	26	n	0.00	0	14	0	14	n	0.00	0	21	0	21	n	0.00	0	36	0	36	n	0.00	0	15	0	15	n	0.00	0	39	0	39	n	0.00	0	13	0	13	n	0.00	0	20	0	20	n	0.00	0	31	0	31	n	0.00	0	26	0	26	n	0.00	0	35	0	35	n	ENSMUSG00000015451.17	C4a	chr17	lncRNA	complement component 4A (Rodgers blood group)
novel_NIR_8554	chr17	35029743	35030091	-	35029353	35030091	A3SS	ENSMUST00000162133.8	novel	0.17	4	19	4	19	y	0.24	5	16	5	16	y	0.21	6	23	6	23	y	0.30	7	16	7	16	y	0.04	1	26	1	26	n	0.14	3	19	3	19	n	0.09	3	29	3	29	n	0.00	0	12	0	12	n	0.11	2	17	2	17	n	0.22	8	28	8	28	y	0.44	11	14	11	14	y	0.18	5	23	5	23	n	ENSMUSG00000015451.17	C4a	chr17	lncRNA	complement component 4A (Rodgers blood group)
novel_NIR_8555	chr17	35029743	35030091	-	35029577	35030091	A3SS	ENSMUST00000160679.8	novel	0.27	4	11	4	11	y	0.16	5	26	5	26	y	0.30	6	14	6	14	y	0.25	7	21	7	21	y	0.03	1	36	1	36	n	0.17	3	15	3	15	n	0.07	3	39	3	39	n	0.00	0	13	0	13	n	0.09	2	20	2	20	n	0.21	8	31	8	31	y	0.30	11	26	11	26	y	0.12	5	35	5	35	n	ENSMUSG00000015451.17	C4a	chr17	lncRNA	complement component 4A (Rodgers blood group)
novel_NIR_8556	chr17	35035975	35036070	-	35035977	35036070	A3SS	ENSMUST00000160679.8	novel	0.15	7	41	7	41	y	0.08	2	23	2	23	n	0.26	11	32	11	32	y	0.07	4	52	4	52	n	0.11	7	58	7	58	n	0.05	1	21	1	21	n	0.05	3	53	3	53	n	0.17	6	30	6	30	y	0.05	2	37	2	37	n	0.03	1	36	1	36	n	0.12	3	21	3	21	n	0.06	5	79	5	79	n	ENSMUSG00000015451.17	C4a	chr17	lncRNA	complement component 4A (Rodgers blood group)
novel_NIR_8557	chr17	35065387	35065498	-	35065123	35065498	A3SS	ENSMUST00000173403.8	novel	0.50	4	4	4	4	y	0.00	0	2	0	2	n	0.60	3	2	3	2	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	3	3	3	3	y	ENSMUSG00000040356.17	Skiv2l	chr17	protein_coding	superkiller viralicidic activity 2-like (S. cerevisiae)
novel_NIR_8558	chr17	35067201	35068872	-	35067201	35069110	A5SS	ENSMUST00000172966.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000040356.17	Skiv2l	chr17	protein_coding	superkiller viralicidic activity 2-like (S. cerevisiae)
novel_NIR_8559	chr17	35076797	35077023	-	35076797	35077474	A5SS	ENSMUST00000133127.2	novel	1.00	115	0	115	0	y	1.00	126	0	126	0	y	0.96	217	10	217	10	y	1.00	123	0	123	0	y	0.99	191	1	191	1	y	1.00	146	0	146	0	y	0.98	168	3	168	3	y	1.00	136	0	136	0	y	1.00	65	0	65	0	y	1.00	133	0	133	0	y	0.98	114	2	114	2	y	0.98	96	2	96	2	y	ENSMUSG00000090231.11	Cfb	chr17	protein_coding	complement factor B
novel_NIR_8560	chr17	35076797	35077023	-	35076797	35077985	A5SS	ENSMUST00000176332.2	novel	0.98	115	2	115	2	y	1.00	126	0	126	0	y	0.95	217	12	217	12	y	1.00	123	0	123	0	y	0.98	191	3	191	3	y	0.96	146	6	146	6	y	0.94	168	10	168	10	y	0.96	136	5	136	5	y	1.00	65	0	65	0	y	0.99	133	1	133	1	y	0.95	114	6	114	6	y	1.00	96	0	96	0	y	ENSMUSG00000090231.11	Cfb	chr17	protein_coding	complement factor B
novel_NIR_8561	chr17	35080189;35081323	35081028;35081999	-	35080189	35081999	cassetteExon	ENSMUST00000129891.2	novel	1.00	0.5	0	0;1	0	n	-	-	-	-	-	-	1.00	2.5	0	2;3	0	y	1.00	1.5	0	0;3	0	n	1.00	0.5	0	0;1	0	n	1.00	1.0	0	0;2	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1.0	0	0;2	0	n	1.00	1.0	0	0;2	0	n	1.00	0.5	0	0;1	0	n	-	-	-	-	-	-	ENSMUSG00000092511.8	Gm20547	chr17	protein_coding	predicted gene 20547
novel_NIR_8562	chr17	35081323	35081999	-	35080189	35081999	A3SS	ENSMUST00000129891.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000092511.8	Gm20547	chr17	protein_coding	predicted gene 20547
novel_NIR_8563	chr17	35083892	35085494	-	35083582	35085494	A3SS	ENSMUST00000129891.2	novel	1.00	6	0	6	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	n	1.00	11	0	11	0	n	1.00	2	0	2	0	n	1.00	2	0	2	0	n	1.00	1	0	1	0	n	1.00	12	0	12	0	n	1.00	4	0	4	0	n	1.00	8	0	8	0	y	1.00	9	0	9	0	y	ENSMUSG00000092511.8	Gm20547	chr17	protein_coding	predicted gene 20547
novel_NIR_8564	chr17	35085234	35085494	-	35083582	35085494	A3SS	ENSMUST00000129891.2	novel	1.00	3	0	3	0	y	1.00	10	0	10	0	y	1.00	6	0	6	0	y	1.00	4	0	4	0	y	1.00	14	0	14	0	y	1.00	2	0	2	0	y	1.00	11	0	11	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	12	0	12	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000092511.8	Gm20547	chr17	protein_coding	predicted gene 20547
novel_NIR_8565	chr17	35094993	35095130	-	35091483	35095130	A3SS	ENSMUST00000146299.8	novel	1.00	3	0	3	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	4	0	4	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	4	0	4	0	y	ENSMUSG00000092511.8	Gm20547	chr17	protein_coding	predicted gene 20547
novel_NIR_8566	chr17	35099062	35100548	-	35095486	35100548	A3SS	ENSMUST00000146299.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.33	1	2	1	2	n	ENSMUSG00000092511.8	Gm20547	chr17	protein_coding	predicted gene 20547
novel_NIR_8567	chr17	35126820	35127155	+	35126820	35127380	A3SS	ENSMUST00000172921.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000013787.16	Ehmt2	chr17	protein_coding	euchromatic histone lysine N-methyltransferase 2
novel_NIR_8568	chr17	3513517	3527450	+	3504626	3527450	A5SS	ENSMUST00000169838.9	novel	1.00	9	0	9	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	8	0	8	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	4	0	4	0	y	1.00	17	0	17	0	y	1.00	14	0	14	0	y	1.00	13	0	13	0	y	1.00	17	0	17	0	y	ENSMUSG00000023800.16	Tiam2	chr17	protein_coding	T cell lymphoma invasion and metastasis 2
novel_NIR_8569	chr17	35167537	35170861	-	35169451	35170861	3pMXE	ENSMUST00000173070.8	novel	0.03	1	39	1	39	n	0.07	3	39	3	39	n	0.02	2	83	2	83	n	0.23	5	17	5	17	y	0.02	1	53	1	53	n	0.02	1	48	1	48	n	0.04	2	48	2	48	n	0.03	1	29	1	29	n	0.00	0	29	0	29	n	0.07	3	37	3	37	n	0.08	2	23	2	23	n	0.03	1	34	1	34	n	ENSMUSG00000092203.8	1110038B12Rik	chr17	lncRNA	RIKEN cDNA 1110038B12 gene
novel_NIR_8570	chr17	35233337	35233605	+	35233337	35233913	A3SS	ENSMUST00000173142.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000007029.17	Vars	chr17	protein_coding	valyl-tRNA synthetase
novel_NIR_8571	chr17	35241493	35241624	+	35240603	35241624	A5SS	ENSMUST00000007245.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000007030.9	Vwa7	chr17	protein_coding	von Willebrand factor A domain containing 7
novel_NIR_8572	chr17	35252694	35258177	-	35252694;35257444	35257382;35258177	ES	ENSMUST00000007250.14	novel	-	-	-	-	-	-	0.00	0	1.0	0	1;1	n	-	-	-	-	-	-	0.00	0	0.5	0	0;1	n	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2.0	0	2;2	n	0.50	2	2.0	2	1;3	y	-	-	-	-	-	-	0.00	0	2.5	0	0;5	n	ENSMUSG00000007035.16	Msh5	chr17	protein_coding	mutS homolog 5
novel_NIR_8573	chr17	35252694	35258177	-	35257444	35258177	3pMXE	ENSMUST00000174556.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000007035.16	Msh5	chr17	protein_coding	mutS homolog 5
novel_NIR_8574	chr17	35333788	35336672	-	35333788	35334094	5pMXE	ENSMUST00000172854.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.60	3	2	3	2	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000043807.7	Ly6g5b	chr17	protein_coding	lymphocyte antigen 6 complex, locus G5B
novel_NIR_8575	chr17	35333788	35336672	-	35335505	35336672	3pMXE	ENSMUST00000173633.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.60	3	2	3	2	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024387.14	Csnk2b	chr17	protein_coding	casein kinase 2, beta polypeptide
novel_NIR_8576	chr17	35335385	35336672	-	35335505	35336672	A3SS	ENSMUST00000173633.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024387.14	Csnk2b	chr17	protein_coding	casein kinase 2, beta polypeptide
novel_NIR_8577	chr17	35336277	35336672	-	35335505	35336672	A3SS	ENSMUST00000173633.3	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.60	3	2	3	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024387.14	Csnk2b	chr17	protein_coding	casein kinase 2, beta polypeptide
novel_NIR_8578	chr17	35336852	35336972	-	35336898	35336972	A3SS	ENSMUST00000174024.8	novel	1.00	2	0	2	0	y	0.75	3	1	3	1	y	1.00	8	0	8	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	9	0	9	0	y	1.00	10	0	10	0	y	-	-	-	-	-	-	ENSMUSG00000024387.14	Csnk2b	chr17	protein_coding	casein kinase 2, beta polypeptide
novel_NIR_8579	chr17	35339503	35340001	-	35339503	35339984	A5SS	ENSMUST00000174306.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024387.14	Csnk2b	chr17	protein_coding	casein kinase 2, beta polypeptide
novel_NIR_8580	chr17	35339503	35340001	-	35339503	35340287	A5SS	ENSMUST00000173114.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000024387.14	Csnk2b	chr17	protein_coding	casein kinase 2, beta polypeptide
novel_NIR_8581	chr17	35339503	35340001	-	35339503	35340770	A5SS	ENSMUST00000172765.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000024387.14	Csnk2b	chr17	protein_coding	casein kinase 2, beta polypeptide
novel_NIR_8582	chr17	35339503	35341958	-	35339503	35339984	5pMXE	ENSMUST00000174306.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024387.14	Csnk2b	chr17	protein_coding	casein kinase 2, beta polypeptide
novel_NIR_8583	chr17	35339503	35341958	-	35339503	35340287	5pMXE	ENSMUST00000173114.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000024387.14	Csnk2b	chr17	protein_coding	casein kinase 2, beta polypeptide
novel_NIR_8584	chr17	35339503	35341958	-	35339503	35340770	5pMXE	ENSMUST00000172765.9	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000024387.14	Csnk2b	chr17	protein_coding	casein kinase 2, beta polypeptide
novel_NIR_8585	chr17	35342214	35344209	-	35342214	35345134	A5SS	ENSMUST00000173576.2	novel	0.14	1	6	1	6	n	0.33	3	6	3	6	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.20	1	4	1	4	n	0.18	2	9	2	9	n	0.25	1	3	1	3	n	0.40	2	3	2	3	n	0.25	3	9	3	9	n	0.33	2	4	2	4	n	0.40	4	6	4	6	y	ENSMUSG00000092241.2	Gm20522	chr17	lncRNA	predicted gene 20522
novel_NIR_8586	chr17	35342214	35345139	-	35342214	35345134	A5SS	ENSMUST00000173576.2	novel	0.25	2	6	2	6	y	0.14	1	6	1	6	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.23	3	10	3	10	y	0.33	2	4	2	4	y	0.36	5	9	5	9	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.31	4	9	4	9	y	0.56	5	4	5	4	y	0.14	1	6	1	6	n	ENSMUSG00000092241.2	Gm20522	chr17	lncRNA	predicted gene 20522
novel_NIR_8587	chr17	35342214;35344291	35344209;35345134	-	35342214	35345134	cassetteExon	ENSMUST00000173576.2	novel	0.08	0.5	6	1;0	6	n	0.20	1.5	6	3;0	6	n	0.00	0.0	1	0;0	1	n	0.00	0.0	2	0;0	2	n	0.00	0.0	10	0;0	10	n	0.20	1.0	4	1;1	4	n	0.18	2.0	9	2;2	9	y	0.14	0.5	3	1;0	3	n	0.33	1.5	3	2;1	3	n	0.18	2.0	9	3;1	9	n	0.27	1.5	4	2;1	4	n	0.25	2.0	6	4;0	6	n	ENSMUSG00000092241.2	Gm20522	chr17	lncRNA	predicted gene 20522
novel_NIR_8588	chr17	35354424	35355091	+	35354789	35355091	5pMXE	ENSMUST00000173550.8	novel	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	1.00	3	0	3	0	y	0.00	0	7	0	7	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.33	2	4	2	4	y	ENSMUSG00000024392.18	Bag6	chr17	protein_coding	BCL2-associated athanogene 6
novel_NIR_8589	chr17	35354424	35355091	+	35354980	35355091	5pMXE	ENSMUST00000174281.9	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.43	3	4	3	4	y	0.00	0	8	0	8	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.50	2	2	2	2	y	ENSMUSG00000024392.18	Bag6	chr17	protein_coding	BCL2-associated athanogene 6
novel_NIR_8590	chr17	35365145	35365246	+	35365145	35365243	A3SS	ENSMUST00000172993.2	novel	0.20	1	4	1	4	n	0.27	3	8	3	8	y	0.43	3	4	3	4	y	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.14	2	12	2	12	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.33	4	8	4	8	y	0.30	3	7	3	7	y	ENSMUSG00000024392.18	Bag6	chr17	protein_coding	BCL2-associated athanogene 6
novel_NIR_8591	chr17	35390169	35390739	-	35390169;35390552	35390390;35390739	ES	ENSMUST00000173281.8	novel	0.02	1	65.0	1	74;56	n	0.04	3	66.5	3	88;45	n	0.15	3	16.5	3	16;17	y	0.13	4	27.0	4	28;26	n	0.09	7	72.5	7	63;82	n	0.07	1	12.5	1	16;9	n	0.00	0	51.5	0	58;45	n	0.09	2	19.5	2	25;14	n	0.00	0	32.5	0	42;23	n	0.02	1	42.0	1	53;31	n	0.16	8	40.5	8	46;35	y	0.03	1	32.5	1	37;28	n	ENSMUSG00000024397.15	Aif1	chr17	protein_coding	allograft inflammatory factor 1
novel_NIR_8592	chr17	35390169	35390739	-	35390552	35390739	3pMXE	ENSMUST00000173106.2	novel	0.02	1	56	1	56	n	0.06	3	45	3	45	n	0.15	3	17	3	17	y	0.13	4	26	4	26	n	0.08	7	82	7	82	n	0.10	1	9	1	9	n	0.00	0	45	0	45	n	0.12	2	14	2	14	n	0.00	0	23	0	23	n	0.03	1	31	1	31	n	0.19	8	35	8	35	y	0.03	1	28	1	28	n	ENSMUSG00000024397.15	Aif1	chr17	protein_coding	allograft inflammatory factor 1
novel_NIR_8593	chr17	3540688	3553156	+	3527553	3553156	A5SS	ENSMUST00000169838.9	novel	0.50	3	3	3	3	y	0.50	3	3	3	3	y	1.00	4	0	4	0	y	0.15	2	11	2	11	y	0.75	6	2	6	2	y	-	-	-	-	-	-	0.00	0	13	0	13	n	0.00	0	2	0	2	n	0.13	2	13	2	13	n	0.16	3	16	3	16	y	0.15	2	11	2	11	y	0.00	0	29	0	29	n	ENSMUSG00000023800.16	Tiam2	chr17	protein_coding	T cell lymphoma invasion and metastasis 2
novel_NIR_8594	chr17	3540688	3553156	+	3532890	3553156	A5SS	ENSMUST00000227604.2	novel	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.75	3	1	3	1	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000023800.16	Tiam2	chr17	protein_coding	T cell lymphoma invasion and metastasis 2
novel_NIR_8595	chr17	3540688	3553156	+	3534364	3553156	A5SS	ENSMUST00000226913.2	novel	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000023800.16	Tiam2	chr17	protein_coding	T cell lymphoma invasion and metastasis 2
novel_NIR_8596	chr17	3540688	3553156	+	3541012	3553156	5pMXE	ENSMUST00000226434.2	novel	1.00	3	0	3	0	y	0.60	3	2	3	2	y	0.25	4	12	4	12	y	0.22	2	7	2	7	y	0.46	6	7	6	7	y	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	1.00	2	0	2	0	y	0.25	3	9	3	9	y	0.29	2	5	2	5	y	0.00	0	4	0	4	n	ENSMUSG00000023800.16	Tiam2	chr17	protein_coding	T cell lymphoma invasion and metastasis 2
novel_NIR_8597	chr17	3541012	3546232	+	3541012	3553156	A3SS	ENSMUST00000226434.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.33	2	4	2	4	y	ENSMUSG00000023800.16	Tiam2	chr17	protein_coding	T cell lymphoma invasion and metastasis 2
novel_NIR_8598	chr17	35542315	35564134	+	35564006	35564134	5pMXE	ENSMUST00000173115.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000091705.9	H2-Q2	chr17	protein_coding	histocompatibility 2, Q region locus 2
novel_NIR_8599	chr17	35562590	35563731	+	35562364	35563731	A5SS	ENSMUST00000074806.12	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	2	4	2	4	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000091705.9	H2-Q2	chr17	protein_coding	histocompatibility 2, Q region locus 2
novel_NIR_8600	chr17	35564462	35564820	+	35564462	35564636	3pMXE	ENSMUST00000074806.12	novel	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	ENSMUSG00000091705.9	H2-Q2	chr17	protein_coding	histocompatibility 2, Q region locus 2
novel_NIR_8601	chr17	35564462	35564820	+	35564462;35564684	35564636;35564820	ES	ENSMUST00000173115.2	novel	0.00	0	1.0	0	0;2	n	0.57	2	1.5	2	2;1	y	0.00	0	1.0	0	1;1	n	-	-	-	-	-	-	0.00	0	4.0	0	3;5	n	-	-	-	-	-	-	0.00	0	1.0	0	1;1	n	-	-	-	-	-	-	0.00	0	1.5	0	1;2	n	0.00	0	1.0	0	0;2	n	0.67	2	1.0	2	0;2	y	0.00	0	2.0	0	1;3	n	ENSMUSG00000091705.9	H2-Q2	chr17	protein_coding	histocompatibility 2, Q region locus 2
novel_NIR_8602	chr17	35598664	35598864	-	35598713	35598864	A3SS	ENSMUST00000113886.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000079505.3	Gm11131	chr17	lncRNA	predicted gene 11131
novel_NIR_8603	chr17	35598683	35598880	+	35598683	35598796	A3SS	ENSMUST00000081435.5	novel	0.22	19	69	19	69	y	0.10	7	62	7	62	n	0.07	7	92	7	92	n	0.10	8	74	8	74	n	0.08	7	85	7	85	n	0.03	1	32	1	32	n	0.04	2	45	2	45	n	0.00	0	38	0	38	n	0.07	5	66	5	66	n	0.07	7	89	7	89	n	0.17	13	62	13	62	y	0.10	12	104	12	104	n	ENSMUSG00000035929.12	H2-Q4	chr17	protein_coding	histocompatibility 2, Q region locus 4
novel_NIR_8604	chr17	35602352	35741450	+	35602352	35602971	3pMXE	ENSMUST00000081435.5	novel	0.00	0	35	0	35	n	0.01	1	70	1	70	n	0.03	2	58	2	58	n	0.00	0	54	0	54	n	0.00	0	67	0	67	n	0.00	0	42	0	42	n	0.02	1	47	1	47	n	0.03	1	29	1	29	n	0.11	6	51	6	51	n	0.07	5	68	5	68	n	0.30	25	58	25	58	y	0.09	6	64	6	64	n	ENSMUSG00000035929.12	H2-Q4	chr17	protein_coding	histocompatibility 2, Q region locus 4
novel_NIR_8605	chr17	35602352;35602563	35602531;35602971	+	35602352	35602971	cassetteExon	ENSMUST00000081435.5	novel	0.31	16.0	35	23;9	35	y	0.03	2.5	70	5;0	70	n	0.10	6.5	58	13;0	58	n	0.27	20.0	54	34;6	54	y	0.20	17.0	67	28;6	67	y	0.06	2.5	42	5;0	42	n	0.10	5.5	47	8;3	47	n	0.08	2.5	29	5;0	29	n	0.01	0.5	51	1;0	51	n	0.00	0.0	68	0;0	68	n	0.00	0.0	58	0;0	58	n	0.07	4.5	64	7;2	64	n	ENSMUSG00000035929.12	H2-Q4	chr17	protein_coding	histocompatibility 2, Q region locus 4
novel_NIR_8606	chr17	35602352;35602839	35602531;35602971	+	35602352	35602971	cassetteExon	ENSMUST00000081435.5	novel	0.29	14.5	35	23;6	35	y	0.10	8.0	70	5;11	70	n	0.11	7.5	58	13;2	58	n	0.29	22.0	54	34;10	54	y	0.23	20.5	67	28;13	67	y	0.08	3.5	42	5;2	42	n	0.16	9.0	47	8;10	47	y	0.17	6.0	29	5;7	29	y	0.16	9.5	51	1;18	51	n	0.06	4.5	68	0;9	68	n	0.04	2.5	58	0;5	58	n	0.15	11.5	64	7;16	64	y	ENSMUSG00000035929.12	H2-Q4	chr17	protein_coding	histocompatibility 2, Q region locus 4
novel_NIR_8607	chr17	35615075	35616043	+	35614055	35616043	A5SS	ENSMUST00000172979.4	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	ENSMUSG00000055413.13	H2-Q5	chr17	polymorphic_pseudogene	histocompatibility 2, Q region locus 5
novel_NIR_8608	chr17	35647115	35647303	+	35647115	35647243	A3SS	ENSMUST00000174699.8	novel	0.00	0	31	0	31	n	0.17	4	20	4	20	y	0.00	0	7	0	7	n	0.00	0	25	0	25	n	0.04	1	25	1	25	n	0.00	0	8	0	8	n	0.00	0	21	0	21	n	0.17	1	5	1	5	n	0.00	0	24	0	24	n	0.00	0	9	0	9	n	0.04	1	24	1	24	n	0.00	0	5	0	5	n	ENSMUSG00000073409.13	H2-Q6	chr17	protein_coding	histocompatibility 2, Q region locus 6
novel_NIR_8609	chr17	35647358	35647536	+	35647358	35647976	A3SS	ENSMUST00000174699.8	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	7	0	7	0	y	1.00	1	0	1	0	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000073409.13	H2-Q6	chr17	protein_coding	histocompatibility 2, Q region locus 6
novel_NIR_8610	chr17	35647844	35647976	+	35647358	35647976	A5SS	ENSMUST00000174699.8	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	3	3	3	3	y	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000073409.13	H2-Q6	chr17	protein_coding	histocompatibility 2, Q region locus 6
novel_NIR_8611	chr17	35841196	35841338	+	35841196	35841299	A3SS	ENSMUST00000173903.2	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000040312.15	Cchcr1	chr17	protein_coding	coiled-coil alpha-helical rod protein 1
novel_NIR_8612	chr17	35841196	35841338	+	35841196	35841341	A3SS	ENSMUST00000164242.9	novel	0.12	1	7	1	7	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.12	1	7	1	7	n	0.00	0	17	0	17	n	0.22	2	7	2	7	y	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.00	0	8	0	8	n	0.12	1	7	1	7	n	0.00	0	6	0	6	n	0.17	1	5	1	5	n	ENSMUSG00000040312.15	Cchcr1	chr17	protein_coding	coiled-coil alpha-helical rod protein 1
novel_NIR_8613	chr17	35983266	35983578	-	35983055	35983578	A3SS	ENSMUST00000160711.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000001524.15	Gtf2h4	chr17	protein_coding	general transcription factor II H, polypeptide 4
novel_NIR_8614	chr17	36054514	36055372	-	36054514	36074892	A5SS	ENSMUST00000174630.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000092600.2	Gm20442	chr17	lncRNA	predicted gene 20442
novel_NIR_8615	chr17	36054514	36070635	-	36054514	36074892	A5SS	ENSMUST00000174630.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	61	0	61	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	21	0	21	0	y	1.00	4	0	4	0	y	1.00	19	0	19	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000092600.2	Gm20442	chr17	lncRNA	predicted gene 20442
novel_NIR_8616	chr17	3608134	3609818	+	3608179	3609818	A5SS	ENSMUST00000232089.2	novel	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000116852.2	1700102H20Rik	chr17	lncRNA	RIKEN cDNA 1700102H20 gene
novel_NIR_8617	chr17	36135213	36135458	+	36135094	36135458	A5SS	ENSMUST00000173628.8	novel	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.35	9	17	9	17	y	-	-	-	-	-	-	0.25	2	6	2	6	y	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000059714.14	Flot1	chr17	protein_coding	flotillin 1
novel_NIR_8618	chr17	36161405	36162005	+	36161897	36162005	A5SS	ENSMUST00000082337.13	novel	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.29	2	5	2	5	y	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.50	1	1	1	1	n	0.00	0	5	0	5	n	ENSMUSG00000061607.16	Mdc1	chr17	protein_coding	mediator of DNA damage checkpoint 1
novel_NIR_8619	chr17	36203819	36203932	-	36203881	36203932	A3SS	ENSMUST00000059740.15	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000050705.16	2310061I04Rik	chr17	protein_coding	RIKEN cDNA 2310061I04 gene
novel_NIR_8620	chr17	36207151	36207872	-	36206964	36207872	A3SS	ENSMUST00000148482.8	novel	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.18	2	9	2	9	y	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	ENSMUSG00000050705.16	2310061I04Rik	chr17	protein_coding	RIKEN cDNA 2310061I04 gene
novel_NIR_8621	chr17	36208807	36209280	-	36208807	36209149	A5SS&ES	ENSMUST00000149277.8	novel	0.09	1	10	1	10	n	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.25	4	12	4	12	y	0.00	0	23	0	23	n	0.00	0	4	0	4	n	0.00	0	16	0	16	n	0.18	3	14	3	14	y	0.00	0	15	0	15	n	0.11	3	24	3	24	n	0.06	1	16	1	16	n	0.05	1	19	1	19	n	ENSMUSG00000024426.18	Atat1	chr17	protein_coding	alpha tubulin acetyltransferase 1
novel_NIR_8622	chr17	36208807	36209280	-	36208807;36209191	36209149;36209280	ES	ENSMUST00000061052.12	novel	0.09	1	10.0	1	10;10	n	0.00	0	16.5	0	12;21	n	0.00	0	8.5	0	11;6	n	0.30	4	9.5	4	12;7	y	0.00	0	22.0	0	23;21	n	0.00	0	5.0	0	4;6	n	0.00	0	14.5	0	16;13	n	0.21	3	11.0	3	14;8	y	0.00	0	12.5	0	15;10	n	0.14	3	19.0	3	24;14	n	0.05	1	17.5	1	16;19	n	0.05	1	19.5	1	19;20	n	ENSMUSG00000024426.18	Atat1	chr17	protein_coding	alpha tubulin acetyltransferase 1
novel_NIR_8623	chr17	36220383	36220514	-	36220383	36220526	A5SS	ENSMUST00000140990.8	novel	0.00	0	8	0	8	n	0.17	1	5	1	5	n	0.30	3	7	3	7	y	0.29	2	5	2	5	y	0.33	4	8	4	8	y	0.33	1	2	1	2	n	0.08	1	11	1	11	n	0.33	1	2	1	2	n	0.00	0	8	0	8	n	0.17	2	10	2	10	y	0.00	0	8	0	8	n	0.00	0	9	0	9	n	ENSMUSG00000024426.18	Atat1	chr17	protein_coding	alpha tubulin acetyltransferase 1
novel_NIR_8624	chr17	36220383	36220514	-	36220383	36220672	A5SS	ENSMUST00000137182.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024426.18	Atat1	chr17	protein_coding	alpha tubulin acetyltransferase 1
novel_NIR_8625	chr17	36220383	36220514	-	36220383	36220821	A5SS	ENSMUST00000061052.12	novel	0.00	0	8	0	8	n	0.14	1	6	1	6	n	0.17	3	15	3	15	y	0.17	2	10	2	10	y	0.15	4	23	4	23	y	0.12	1	7	1	7	n	0.07	1	14	1	14	n	0.17	1	5	1	5	n	0.00	0	9	0	9	n	0.13	2	13	2	13	n	0.00	0	13	0	13	n	0.00	0	17	0	17	n	ENSMUSG00000024426.18	Atat1	chr17	protein_coding	alpha tubulin acetyltransferase 1
novel_NIR_8626	chr17	36221743	36222311	-	36221743	36223230	A5SS	ENSMUST00000174807.8	novel	0.00	0	10	0	10	n	-	-	-	-	-	-	0.57	4	3	4	3	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	ENSMUSG00000024436.17	Mrps18b	chr17	protein_coding	mitochondrial ribosomal protein S18B
novel_NIR_8627	chr17	36222370	36223257	-	36222370	36225226	A5SS	ENSMUST00000174349.8	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	9	0	9	n	0.00	0	3	0	3	n	ENSMUSG00000024436.17	Mrps18b	chr17	protein_coding	mitochondrial ribosomal protein S18B
novel_NIR_8628	chr17	36352925	36353234	-	36353004	36353234	A3SS	ENSMUST00000173280.2	novel	0.61	11	7	11	7	y	0.70	7	3	7	3	y	0.83	10	2	10	2	y	0.76	22	7	22	7	y	0.59	16	11	16	11	y	0.81	13	3	13	3	y	1.00	7	0	7	0	y	0.64	7	4	7	4	y	1.00	4	0	4	0	y	0.71	24	10	24	10	y	0.50	4	4	4	4	y	0.62	10	6	10	6	y	ENSMUSG00000056116.19	H2-T22	chr17	protein_coding	histocompatibility 2, T region locus 22
novel_NIR_8629	chr17	36429930	36430081	-	36429932	36430081	A3SS	ENSMUST00000174625.8	novel	0.18	2	9	2	9	y	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	ENSMUSG00000079491.10	H2-T10	chr17	polymorphic_pseudogene	histocompatibility 2, T region locus 10
novel_NIR_8630	chr17	36431352	36431507	-	36431324	36431507	A3SS	ENSMUST00000174625.8	novel	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.20	2	8	2	8	y	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	ENSMUSG00000079491.10	H2-T10	chr17	polymorphic_pseudogene	histocompatibility 2, T region locus 10
novel_NIR_8631	chr17	36431672	36431957	-	36431767	36431957	A3SS	ENSMUST00000166442.3	novel	0.00	0	6	0	6	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.40	2	3	2	3	y	0.33	2	4	2	4	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.43	3	4	3	4	y	0.00	0	3	0	3	n	0.50	4	4	4	4	y	0.00	0	6	0	6	n	ENSMUSG00000079491.10	H2-T10	chr17	polymorphic_pseudogene	histocompatibility 2, T region locus 10
novel_NIR_8632	chr17	36476659	36478325	-	36476766	36478325	A3SS	ENSMUST00000173353.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000073402.12	Gm8909	chr17	protein_coding	predicted gene 8909
novel_NIR_8633	chr17	36568574	36568675	-	36568416	36568675	A3SS	ENSMUST00000077535.5	novel	0.50	3	3	3	3	y	0.00	0	13	0	13	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.50	2	2	2	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	ENSMUSG00000024446.14	Rpp21	chr17	protein_coding	ribonuclease P 21 subunit
novel_NIR_8634	chr17	36578710	36579501	-	36578884	36579501	A3SS	ENSMUST00000173665.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000045409.17	Trim39	chr17	protein_coding	tripartite motif-containing 39
novel_NIR_8635	chr17	37269139	37269270	-	37269121	37269270	A3SS	ENSMUST00000174466.2	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	ENSMUSG00000036315.14	Polr1h	chr17	protein_coding	RNA polymerase I subunit H
novel_NIR_8636	chr17	37359498	37361891	+	37359498;37360689	37360545;37361891	ES	ENSMUST00000173564.2	novel	0.00	0	2.5	0	1;4	n	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	ENSMUSG00000024462.18	Gabbr1	chr17	protein_coding	gamma-aminobutyric acid (GABA) B receptor, 1
novel_NIR_8637	chr17	37359498	37361891	+	37359498;37360689	37360669;37361891	ES	ENSMUST00000025338.16	novel	0.00	0	2.0	0	0;4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024462.18	Gabbr1	chr17	protein_coding	gamma-aminobutyric acid (GABA) B receptor, 1
novel_NIR_8638	chr17	37359498	37361891	+	37360689	37361891	A5SS&ES	ENSMUST00000173823.8	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024462.18	Gabbr1	chr17	protein_coding	gamma-aminobutyric acid (GABA) B receptor, 1
novel_NIR_8639	chr17	37581682	37581982	+	37581682	37581889	A3SS	ENSMUST00000038580.7	novel	0.00	0	11	0	11	n	0.29	2	5	2	5	y	0.00	0	12	0	12	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.29	2	5	2	5	y	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	ENSMUSG00000016206.7	H2-M3	chr17	protein_coding	histocompatibility 2, M region locus 3
novel_NIR_8640	chr17	43136786	43137172	-	43136822	43137172	A3SS	ENSMUST00000024709.9	novel	0.38	9	15	9	15	y	0.60	6	4	6	4	y	0.25	16	48	16	48	y	0.31	10	22	10	22	y	0.39	25	39	25	39	y	0.30	12	28	12	28	y	0.13	4	26	4	26	n	0.27	14	38	14	38	y	0.33	13	26	13	26	y	0.23	12	41	12	41	y	0.12	3	22	3	22	n	0.16	7	38	7	38	y	ENSMUSG00000061665.8	Cd2ap	chr17	protein_coding	CD2-associated protein
novel_NIR_8641	chr17	43586411	43595719	+	43581375	43595719	A5SS	ENSMUST00000047399.6	novel	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	19	0	19	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.12	1	7	1	7	n	0.07	1	14	1	14	n	0.00	0	10	0	10	n	0.50	3	3	3	3	y	0.00	0	11	0	11	n	0.03	1	28	1	28	n	ENSMUSG00000041293.6	Adgrf1	chr17	protein_coding	adhesion G protein-coupled receptor F1
novel_NIR_8642	chr17	43602007	43604118	+	43602007	43604115	A3SS	ENSMUST00000047399.6	novel	0.20	1	4	1	4	n	0.17	1	5	1	5	n	0.24	5	16	5	16	y	0.18	2	9	2	9	y	0.67	2	1	2	1	y	0.00	0	12	0	12	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.29	2	5	2	5	y	0.20	3	12	3	12	y	0.23	6	20	6	20	y	ENSMUSG00000041293.6	Adgrf1	chr17	protein_coding	adhesion G protein-coupled receptor F1
novel_NIR_8643	chr17	43968695	43970707	-	43968695	43972505	A5SS	ENSMUST00000024705.6	novel	0.00	0	2	0	2	n	1.00	3	0	3	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000023912.11	Slc25a27	chr17	protein_coding	solute carrier family 25, member 27
novel_NIR_8644	chr17	43968695;43970789	43970707;43972505	-	43968695	43972505	cassetteExon	ENSMUST00000024705.6	novel	0.20	0.5	2	0;1	2	n	1.00	3.0	0	3;3	0	y	-	-	-	-	-	-	1.00	0.5	0	1;0	0	n	1.00	2.0	0	2;2	0	y	1.00	1.0	0	0;2	0	n	0.00	0.0	2	0;0	2	n	1.00	0.5	0	1;0	0	n	1.00	1.0	0	1;1	0	n	1.00	0.5	0	1;0	0	n	-	-	-	-	-	-	1.00	1.0	0	2;0	0	n	ENSMUSG00000023912.11	Slc25a27	chr17	protein_coding	solute carrier family 25, member 27
novel_NIR_8645	chr17	43970789	43972505	-	43968695	43972505	A3SS	ENSMUST00000024705.6	novel	0.33	1	2	1	2	n	1.00	3	0	3	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023912.11	Slc25a27	chr17	protein_coding	solute carrier family 25, member 27
novel_NIR_8646	chr17	43970989	43972505	-	43968695	43972505	A3SS	ENSMUST00000024705.6	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023912.11	Slc25a27	chr17	protein_coding	solute carrier family 25, member 27
novel_NIR_8647	chr17	43971278	43972505	-	43968695	43972505	A3SS	ENSMUST00000024705.6	novel	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023912.11	Slc25a27	chr17	protein_coding	solute carrier family 25, member 27
novel_NIR_8648	chr17	43972589	43974969	-	43972589	43974965	A5SS	ENSMUST00000024705.6	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000023912.11	Slc25a27	chr17	protein_coding	solute carrier family 25, member 27
novel_NIR_8649	chr17	44147388	44242197	+	44147388	44328658	A3SS	ENSMUST00000228972.2	novel	0.00	0	7	0	7	n	0.00	0	16	0	16	n	0.00	0	46	0	46	n	0.00	0	26	0	26	n	0.00	0	25	0	25	n	0.00	0	27	0	27	n	0.04	1	27	1	27	n	0.00	0	18	0	18	n	0.00	0	9	0	9	n	0.00	0	20	0	20	n	0.00	0	5	0	5	n	0.22	2	7	2	7	y	ENSMUSG00000039601.17	Rcan2	chr17	protein_coding	regulator of calcineurin 2
novel_NIR_8650	chr17	45352193	45430030	+	45352193;45359279	45359169;45430030	ES	ENSMUST00000127798.8	novel	0.29	2	5.0	2	0;10	y	0.00	0	6.5	0	0;13	n	0.00	0	6.5	0	1;12	n	0.00	0	6.0	0	0;12	n	0.00	0	9.0	0	1;17	n	0.00	0	3.0	0	1;5	n	0.00	0	15.5	0	0;31	n	0.00	0	3.5	0	0;7	n	0.00	0	8.5	0	0;17	n	0.00	0	11.0	0	0;22	n	0.00	0	11.5	0	0;23	n	0.00	0	8.5	0	1;16	n	ENSMUSG00000038954.15	Supt3	chr17	protein_coding	SPT3, SAGA and STAGA complex component
novel_NIR_8651	chr17	45352193	45430030	+	45359279	45430030	A5SS&ES	ENSMUST00000050630.14	novel	0.17	2	10	2	10	y	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	17	0	17	n	0.00	0	5	0	5	n	0.00	0	31	0	31	n	0.00	0	7	0	7	n	0.00	0	17	0	17	n	0.00	0	22	0	22	n	0.00	0	23	0	23	n	0.00	0	16	0	16	n	ENSMUSG00000038954.15	Supt3	chr17	protein_coding	SPT3, SAGA and STAGA complex component
novel_NIR_8652	chr17	45825563	45825849	+	45825563	45825711	A3SS&ES	ENSMUST00000024733.9	novel	0.00	0	19	0	19	n	0.06	1	16	1	16	n	0.00	0	12	0	12	n	0.00	0	33	0	33	n	0.00	0	29	0	29	n	0.22	2	7	2	7	y	0.00	0	29	0	29	n	0.00	0	13	0	13	n	0.08	2	22	2	22	n	0.08	3	36	3	36	n	0.00	0	22	0	22	n	0.00	0	27	0	27	n	ENSMUSG00000023938.9	Aars2	chr17	protein_coding	alanyl-tRNA synthetase 2, mitochondrial
novel_NIR_8653	chr17	45826773	45826871	+	45826437	45826871	A5SS	ENSMUST00000024733.9	novel	0.00	0	16	0	16	n	0.00	0	21	0	21	n	0.00	0	18	0	18	n	0.13	3	20	3	20	n	0.00	0	26	0	26	n	0.43	3	4	3	4	y	0.00	0	21	0	21	n	0.00	0	8	0	8	n	0.05	2	36	2	36	n	0.00	0	34	0	34	n	0.04	1	22	1	22	n	0.03	1	28	1	28	n	ENSMUSG00000023938.9	Aars2	chr17	protein_coding	alanyl-tRNA synthetase 2, mitochondrial
novel_NIR_8654	chr17	45869523	45870022	+	45869523	45870134	A3SS	ENSMUST00000024742.9	novel	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	19	0	19	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.29	2	5	2	5	y	0.00	0	9	0	9	n	ENSMUSG00000023947.9	Nfkbie	chr17	protein_coding	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon
novel_NIR_8655	chr17	45874994	45875503	+	45874994	45875851	A3SS	ENSMUST00000233139.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037089.12	Slc35b2	chr17	protein_coding	solute carrier family 35, member B2
novel_NIR_8656	chr17	45876005	45877511	+	45876005	45876126	3pMXE	ENSMUST00000224341.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.60	6	4	6	4	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000037089.12	Slc35b2	chr17	protein_coding	solute carrier family 35, member B2
novel_NIR_8657	chr17	45876005	45877511	+	45876005	45876590	3pMXE	ENSMUST00000226086.2	novel	0.00	0	25	0	25	n	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.00	0	16	0	16	n	0.00	0	16	0	16	n	0.00	0	3	0	3	n	0.27	6	16	6	16	y	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	18	0	18	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	ENSMUSG00000037089.12	Slc35b2	chr17	protein_coding	solute carrier family 35, member B2
novel_NIR_8658	chr17	45882452	45882691	-	45880476	45882691	A3SS	ENSMUST00000165127.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000023944.15	Hsp90ab1	chr17	protein_coding	heat shock protein 90 alpha (cytosolic), class B member 1
novel_NIR_8659	chr17	45882533	45882691	-	45880476	45882691	A3SS	ENSMUST00000165127.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000023944.15	Hsp90ab1	chr17	protein_coding	heat shock protein 90 alpha (cytosolic), class B member 1
novel_NIR_8660	chr17	45882837	45883709	-	45882837	45883360	5pMXE	ENSMUST00000130406.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000023944.15	Hsp90ab1	chr17	protein_coding	heat shock protein 90 alpha (cytosolic), class B member 1
novel_NIR_8661	chr17	45897296	45898154	-	45896708	45898154	A3SS	ENSMUST00000164769.8	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
novel_NIR_8662	chr17	45901264	45902858	-	45901264	45904258	A5SS	ENSMUST00000170488.8	novel	0.00	0	7	0	7	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.15	2	11	2	11	y	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
novel_NIR_8663	chr17	45901264	45902858	-	45901264	45906408	A5SS	ENSMUST00000167195.8	novel	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.22	2	7	2	7	y	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
novel_NIR_8664	chr17	45901264	45902858	-	45901264	45910399	A5SS	ENSMUST00000169729.8	novel	0.00	0	19	0	19	n	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.00	0	28	0	28	n	0.00	0	14	0	14	n	0.00	0	31	0	31	n	0.00	0	14	0	14	n	0.00	0	26	0	26	n	0.00	0	25	0	25	n	0.00	0	20	0	20	n	0.15	2	11	2	11	y	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
novel_NIR_8665	chr17	45901264	45903034	-	45901264	45906408	A5SS	ENSMUST00000167195.8	novel	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	0.29	2	5	2	5	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
novel_NIR_8666	chr17	45901264;45903449	45903034;45904258	-	45901264	45904258	cassetteExon	ENSMUST00000170488.8	novel	0.12	1.0	7	0;2	7	n	0.00	0.0	4	0;0	4	n	-	-	-	-	-	-	0.18	1.5	7	0;3	7	n	0.50	2.0	2	0;4	2	n	0.00	0.0	1	0;0	1	n	0.33	1.0	2	0;2	2	n	0.00	0.0	3	0;0	3	n	0.24	2.5	8	2;3	8	y	0.12	1.0	7	0;2	7	n	0.00	0.0	2	0;0	2	n	0.15	2.0	11	0;4	11	n	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
novel_NIR_8667	chr17	45903183	45910399	-	45903183	45903388	5pMXE	ENSMUST00000166119.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
novel_NIR_8668	chr17	45903183	45910399	-	45904358	45910399	A3SS&ES	ENSMUST00000166633.8	novel	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.17	2	10	2	10	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
novel_NIR_8669	chr17	45903187	45904305	-	45903187	45906721	A5SS	ENSMUST00000164618.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
novel_NIR_8670	chr17	45903187	45904305	-	45903187	45906804	A5SS	ENSMUST00000097317.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
novel_NIR_8671	chr17	45903187	45905215	-	45903187	45906408	A5SS	ENSMUST00000064889.13	novel	0.00	0	17	0	17	n	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.00	0	21	0	21	n	0.04	1	22	1	22	n	0.00	0	6	0	6	n	0.00	0	24	0	24	n	0.20	2	8	2	8	y	0.00	0	11	0	11	n	0.00	0	22	0	22	n	0.00	0	16	0	16	n	0.00	0	29	0	29	n	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
novel_NIR_8672	chr17	45903187	45905215	-	45903187	45906721	A5SS	ENSMUST00000164618.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
novel_NIR_8673	chr17	45903187	45905215	-	45903187	45906804	A5SS	ENSMUST00000097317.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
novel_NIR_8674	chr17	45903187	45905215	-	45903187	45910399	A5SS	ENSMUST00000171847.8	novel	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	17	0	17	n	0.03	1	36	1	36	n	0.00	0	11	0	11	n	0.00	0	25	0	25	n	0.25	2	6	2	6	y	0.00	0	11	0	11	n	0.00	0	25	0	25	n	0.00	0	13	0	13	n	0.00	0	28	0	28	n	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
novel_NIR_8675	chr17	45903187	45907536	-	45903187	45906721	5pMXE	ENSMUST00000164618.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
novel_NIR_8676	chr17	45903187	45907536	-	45903187	45906804	5pMXE	ENSMUST00000097317.10	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
novel_NIR_8677	chr17	45903187	45907916	-	45903187	45906408	5pMXE	ENSMUST00000064889.13	novel	0.00	0	17	0	17	n	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.19	5	21	5	21	y	0.15	4	22	4	22	y	0.00	0	6	0	6	n	0.00	0	24	0	24	n	0.00	0	8	0	8	n	0.21	3	11	3	11	y	0.00	0	22	0	22	n	0.06	1	16	1	16	n	0.03	1	29	1	29	n	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
novel_NIR_8678	chr17	45903187	45907916	-	45903187	45906721	5pMXE	ENSMUST00000164618.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.33	1	2	1	2	n	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
novel_NIR_8679	chr17	45903187	45907916	-	45903187	45906804	5pMXE	ENSMUST00000097317.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
novel_NIR_8680	chr17	45903187	45907916	-	45903187	45910399	A5SS	ENSMUST00000171847.8	novel	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.23	5	17	5	17	y	0.10	4	36	4	36	n	0.00	0	11	0	11	n	0.00	0	25	0	25	n	0.00	0	6	0	6	n	0.21	3	11	3	11	y	0.00	0	25	0	25	n	0.07	1	13	1	13	n	0.03	1	28	1	28	n	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
novel_NIR_8681	chr17	45903249	45904258	-	45901264	45904258	A3SS	ENSMUST00000170488.8	novel	0.12	1	7	1	7	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.42	5	7	5	7	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
novel_NIR_8682	chr17	45903449	45904258	-	45901264	45904258	A3SS	ENSMUST00000170488.8	novel	0.22	2	7	2	7	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.30	3	7	3	7	y	0.67	4	2	4	2	y	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.27	3	8	3	8	n	0.22	2	7	2	7	n	0.00	0	2	0	2	n	0.27	4	11	4	11	y	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
novel_NIR_8683	chr17	45904358	45904452	-	45904358	45904482	A5SS	ENSMUST00000167692.8	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.08	1	11	1	11	n	0.22	2	7	2	7	y	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
novel_NIR_8684	chr17	45904358	45904452	-	45904358	45906804	A5SS	ENSMUST00000170113.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
novel_NIR_8685	chr17	45904358	45904452	-	45904358	45907916	A5SS	ENSMUST00000168274.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
novel_NIR_8686	chr17	45904358	45904452	-	45904358	45910399	A5SS	ENSMUST00000166633.8	novel	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.18	2	9	2	9	y	0.00	0	5	0	5	n	0.12	1	7	1	7	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
novel_NIR_8687	chr17	45904358	45906721	-	45903187	45906721	A3SS	ENSMUST00000164618.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
novel_NIR_8688	chr17	45904358	45906721	-	45904358	45904482	5pMXE	ENSMUST00000167692.8	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.29	2	5	2	5	y	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
novel_NIR_8689	chr17	45904358	45906721	-	45904358	45906804	A5SS	ENSMUST00000170113.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
novel_NIR_8690	chr17	45904358	45906721	-	45904358	45907916	A5SS	ENSMUST00000168274.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.29	2	5	2	5	y	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
novel_NIR_8691	chr17	45904358	45906721	-	45904358	45910399	A5SS	ENSMUST00000166633.8	novel	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.25	2	6	2	6	y	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
novel_NIR_8692	chr17	45953102	45953394	-	45950812	45953394	A3SS	ENSMUST00000120717.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.33	1	2	1	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.20	2	8	2	8	y	ENSMUSG00000058626.17	Capn11	chr17	protein_coding	calpain 11
novel_NIR_8693	chr17	45954798	45955355	-	45954798	45964109	A5SS	ENSMUST00000120717.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000058626.17	Capn11	chr17	protein_coding	calpain 11
novel_NIR_8694	chr17	45991567	45997043	-	45991567	45996842	A5SS	ENSMUST00000127065.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000036026.16	Tmem63b	chr17	protein_coding	transmembrane protein 63b
novel_NIR_8695	chr17	46486246	46493611	-	46486246;46492457	46492392;46493611	ES	ENSMUST00000024749.9	novel	0.00	0	7.0	0	8;6	n	0.00	0	6.0	0	8;4	n	0.00	0	13.5	0	13;14	n	0.00	0	16.0	0	19;13	n	0.09	1	10.0	1	8;12	n	0.00	0	4.5	0	4;5	n	0.08	1	11.0	1	13;9	n	0.36	2	3.5	2	2;5	y	0.00	0	7.0	0	3;11	n	0.00	0	8.0	0	7;9	n	0.00	0	6.0	0	5;7	n	0.00	0	8.5	0	8;9	n	ENSMUSG00000023953.10	Polh	chr17	protein_coding	polymerase (DNA directed), eta (RAD 30 related)
novel_NIR_8696	chr17	46562153	46562259	+	46562153	46562492	A3SS	ENSMUST00000127378.2	novel	1.00	9	0	9	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	3	0	3	0	y	0.36	4	7	4	7	y	1.00	5	0	5	0	y	1.00	5	0	5	0	y	ENSMUSG00000071074.10	Yipf3	chr17	protein_coding	Yip1 domain family, member 3
novel_NIR_8697	chr17	46618226	46621303	-	46614909	46621303	A3SS	ENSMUST00000171584.2	novel	1.00	4	0	4	0	y	1.00	7	0	7	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	ENSMUSG00000032842.14	Abcc10	chr17	protein_coding	ATP-binding cassette, sub-family C (CFTR/MRP), member 10
novel_NIR_8698	chr17	46618226	46621303	-	46618226;46621159	46620964;46621303	ES	ENSMUST00000167360.8	novel	0.17	4	20.0	4	22;18	y	0.30	7	16.0	7	13;19	y	0.32	6	13.0	6	9;17	y	0.00	0	15.5	0	13;18	n	0.16	6	32.5	6	28;37	y	0.13	2	13.5	2	15;12	n	0.16	5	25.5	5	21;30	y	0.13	2	13.5	2	12;15	n	0.26	4	11.5	4	12;11	y	0.12	2	14.0	2	9;19	n	0.00	0	16.0	0	16;16	n	0.18	5	23.0	5	18;28	y	ENSMUSG00000032842.14	Abcc10	chr17	protein_coding	ATP-binding cassette, sub-family C (CFTR/MRP), member 10
novel_NIR_8699	chr17	46618226;46619399	46619297;46620964	-	46618226	46620964	cassetteExon	ENSMUST00000167360.8	novel	0.04	1.0	22	2;0	22	n	0.07	1.0	13	1;1	13	n	0.22	2.5	9	4;1	9	n	0.07	1.0	13	1;1	13	n	0.08	2.5	28	5;0	28	n	0.00	0.0	15	0;0	15	n	0.00	0.0	21	0;0	21	n	0.04	0.5	12	1;0	12	n	0.11	1.5	12	3;0	12	n	0.05	0.5	9	1;0	9	n	0.16	3.0	16	4;2	16	y	0.03	0.5	18	1;0	18	n	ENSMUSG00000032842.14	Abcc10	chr17	protein_coding	ATP-binding cassette, sub-family C (CFTR/MRP), member 10
novel_NIR_8700	chr17	46618226;46619402	46619297;46620964	-	46618226	46620964	cassetteExon	ENSMUST00000167360.8	novel	0.08	2.0	22	2;2	22	n	0.07	1.0	13	1;1	13	n	0.28	3.5	9	4;3	9	y	0.13	2.0	13	1;3	13	n	0.18	6.0	28	5;7	28	y	0.00	0.0	15	0;0	15	n	0.05	1.0	21	0;2	21	n	0.14	2.0	12	1;3	12	n	0.23	3.5	12	3;4	12	y	0.05	0.5	9	1;0	9	n	0.14	2.5	16	4;1	16	n	0.05	1.0	18	1;1	18	n	ENSMUSG00000032842.14	Abcc10	chr17	protein_coding	ATP-binding cassette, sub-family C (CFTR/MRP), member 10
novel_NIR_8701	chr17	46618226;46619416	46619297;46620964	-	46618226	46620964	cassetteExon	ENSMUST00000167360.8	novel	0.04	1.0	22	2;0	22	n	0.07	1.0	13	1;1	13	n	0.25	3.0	9	4;2	9	y	0.04	0.5	13	1;0	13	n	0.08	2.5	28	5;0	28	n	0.03	0.5	15	0;1	15	n	0.00	0.0	21	0;0	21	n	0.04	0.5	12	1;0	12	n	0.14	2.0	12	3;1	12	n	0.05	0.5	9	1;0	9	n	0.14	2.5	16	4;1	16	n	0.03	0.5	18	1;0	18	n	ENSMUSG00000032842.14	Abcc10	chr17	protein_coding	ATP-binding cassette, sub-family C (CFTR/MRP), member 10
novel_NIR_8702	chr17	46624829	46625142	-	46624977	46625142	A3SS	ENSMUST00000171584.2	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000032842.14	Abcc10	chr17	protein_coding	ATP-binding cassette, sub-family C (CFTR/MRP), member 10
novel_NIR_8703	chr17	46627562	46628007	-	46627562	46632479	A5SS	ENSMUST00000167360.8	novel	0.67	2	1	2	1	y	0.71	5	2	5	2	y	0.53	9	8	9	8	y	0.50	4	4	4	4	y	1.00	7	0	7	0	y	0.71	5	2	5	2	y	0.56	5	4	5	4	y	0.43	6	8	6	8	y	0.83	5	1	5	1	y	0.75	6	2	6	2	y	0.33	2	4	2	4	y	0.88	7	1	7	1	y	ENSMUSG00000032842.14	Abcc10	chr17	protein_coding	ATP-binding cassette, sub-family C (CFTR/MRP), member 10
novel_NIR_8704	chr17	46627562	46628007	-	46627562	46634278	A5SS	ENSMUST00000168490.2	novel	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	9	0	9	0	y	1.00	4	0	4	0	y	1.00	7	0	7	0	y	1.00	5	0	5	0	y	1.00	5	0	5	0	y	1.00	6	0	6	0	y	1.00	5	0	5	0	y	1.00	6	0	6	0	y	1.00	2	0	2	0	y	1.00	7	0	7	0	y	ENSMUSG00000032842.14	Abcc10	chr17	protein_coding	ATP-binding cassette, sub-family C (CFTR/MRP), member 10
novel_NIR_8705	chr17	46632374	46632479	-	46627562	46632479	A3SS	ENSMUST00000167360.8	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.60	3	2	3	2	y	0.60	6	4	6	4	y	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.50	1	1	1	1	n	ENSMUSG00000032842.14	Abcc10	chr17	protein_coding	ATP-binding cassette, sub-family C (CFTR/MRP), member 10
novel_NIR_8706	chr17	46632588;46632786	46632699;46633063	-	46632588	46633063	cassetteExon	ENSMUST00000167360.8	novel	0.44	4.0	5	2;6	5	y	0.00	0.0	4	0;0	4	n	0.62	6.5	4	3;10	4	y	0.05	0.5	10	1;0	10	n	0.18	4.5	20	2;7	20	y	0.20	1.0	4	0;2	4	n	0.18	2.0	9	1;3	9	n	0.22	2.0	7	0;4	7	n	0.07	0.5	7	0;1	7	n	0.33	2.0	4	0;4	4	n	0.11	1.0	8	1;1	8	n	0.47	4.5	5	2;7	5	y	ENSMUSG00000032842.14	Abcc10	chr17	protein_coding	ATP-binding cassette, sub-family C (CFTR/MRP), member 10
novel_NIR_8707	chr17	46632786	46633063	-	46632588	46633063	A3SS	ENSMUST00000167360.8	novel	0.55	6	5	6	5	n	0.00	0	4	0	4	n	0.71	10	4	10	4	n	0.00	0	10	0	10	n	0.26	7	20	7	20	n	0.33	2	4	2	4	y	0.25	3	9	3	9	n	0.36	4	7	4	7	y	0.12	1	7	1	7	n	0.50	4	4	4	4	y	0.11	1	8	1	8	n	0.58	7	5	7	5	n	ENSMUSG00000032842.14	Abcc10	chr17	protein_coding	ATP-binding cassette, sub-family C (CFTR/MRP), member 10
novel_NIR_8708	chr17	46708230	46709932	+	46708230	46709566	A3SS	ENSMUST00000113481.9	novel	0.05	1	18	1	18	n	0.25	2	6	2	6	y	0.00	0	16	0	16	n	0.00	0	16	0	16	n	0.00	0	25	0	25	n	0.00	0	14	0	14	n	0.00	0	19	0	19	n	0.00	0	20	0	20	n	0.00	0	15	0	15	n	0.00	0	18	0	18	n	0.00	0	19	0	19	n	0.00	0	35	0	35	n	ENSMUSG00000015597.18	Zfp318	chr17	protein_coding	zinc finger protein 318
novel_NIR_8709	chr17	46708230	46713660	+	46708230;46711017	46709566;46713660	ES	ENSMUST00000113481.9	novel	0.18	3	14.0	3	18;10	y	0.00	0	7.5	0	6;9	n	0.00	0	17.0	0	16;18	n	0.00	0	13.0	0	16;10	n	0.00	0	28.5	0	25;32	n	0.00	0	9.0	0	14;4	n	0.00	0	25.0	0	19;31	n	0.00	0	14.0	0	20;8	n	0.00	0	14.0	0	15;13	n	0.00	0	19.0	0	18;20	n	0.00	0	15.5	0	19;12	n	0.03	1	31.5	1	35;28	n	ENSMUSG00000015597.18	Zfp318	chr17	protein_coding	zinc finger protein 318
novel_NIR_8710	chr17	46708230	46713660	+	46711017	46713660	5pMXE	ENSMUST00000152472.8	novel	0.23	3	10	3	10	y	0.00	0	9	0	9	n	0.00	0	18	0	18	n	0.00	0	10	0	10	n	0.00	0	32	0	32	n	0.00	0	4	0	4	n	0.00	0	31	0	31	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.00	0	20	0	20	n	0.00	0	12	0	12	n	0.03	1	28	1	28	n	ENSMUSG00000015597.18	Zfp318	chr17	protein_coding	zinc finger protein 318
novel_NIR_8711	chr17	46748352	46749506	-	46748352	46748444	5pMXE	ENSMUST00000233715.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000067144.8	Slc22a7	chr17	protein_coding	solute carrier family 22 (organic anion transporter), member 7
novel_NIR_8712	chr17	46819533	46820728	-	46819538	46820728	A3SS	ENSMUST00000182485.8	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.14	1	6	1	6	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000040327.17	Cul9	chr17	protein_coding	cullin 9
novel_NIR_8713	chr17	46831006	46831408	-	46830857	46831408	A3SS	ENSMUST00000182799.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040327.17	Cul9	chr17	protein_coding	cullin 9
novel_NIR_8714	chr17	46955438;46956079	46955609;46956901	-	46955438	46956901	cassetteExon	ENSMUST00000233974.2	novel	0.43	3.0	4	0;6	4	n	0.53	4.5	4	0;9	4	n	0.22	2.5	9	0;5	9	n	0.29	4.5	11	2;7	11	y	0.21	6.5	24	0;13	24	n	0.75	3.0	1	0;6	1	n	0.36	8.5	15	0;17	15	n	0.09	0.5	5	0;1	5	n	0.83	5.0	1	0;10	1	n	0.25	6.0	18	0;12	18	n	0.15	2.0	11	0;4	11	n	0.41	7.0	10	0;14	10	n	ENSMUSG00000003546.11	Klc4	chr17	protein_coding	kinesin light chain 4
novel_NIR_8715	chr17	46956079	46956901	-	46955438	46956901	A3SS	ENSMUST00000233974.2	novel	0.60	6	4	6	4	y	0.69	9	4	9	4	y	0.36	5	9	5	9	y	0.39	7	11	7	11	n	0.35	13	24	13	24	y	0.86	6	1	6	1	y	0.53	17	15	17	15	y	0.17	1	5	1	5	n	0.91	10	1	10	1	y	0.40	12	18	12	18	y	0.27	4	11	4	11	y	0.58	14	10	14	10	y	ENSMUSG00000003546.11	Klc4	chr17	protein_coding	kinesin light chain 4
novel_NIR_8716	chr17	46983517	46985123	-	46981111	46985123	A3SS	ENSMUST00000233247.2	novel	0.00	0	14	0	14	n	0.00	0	15	0	15	n	0.00	0	14	0	14	n	0.09	1	10	1	10	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.15	2	11	2	11	y	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.07	1	14	1	14	n	0.06	1	16	1	16	n	0.00	0	9	0	9	n	ENSMUSG00000023971.10	Rrp36	chr17	protein_coding	ribosomal RNA processing 36
novel_NIR_8717	chr17	46983770	46985123	-	46981111	46985123	A3SS	ENSMUST00000233247.2	novel	0.00	0	14	0	14	n	0.00	0	15	0	15	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.08	1	11	1	11	n	0.22	2	7	2	7	y	0.00	0	6	0	6	n	0.26	5	14	5	14	y	0.00	0	16	0	16	n	0.18	2	9	2	9	y	ENSMUSG00000023971.10	Rrp36	chr17	protein_coding	ribosomal RNA processing 36
novel_NIR_8718	chr17	47025470	47025832	+	47025470	47026288	A3SS	ENSMUST00000127897.2	novel	0.00	0	1	0	1	n	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	2	0	2	0	n	1.00	2	0	2	0	y	0.60	3	2	3	2	y	-	-	-	-	-	-	ENSMUSG00000002763.17	Pex6	chr17	protein_coding	peroxisomal biogenesis factor 6
novel_NIR_8719	chr17	47037077	47037532	-	47037234	47037532	A3SS	ENSMUST00000233086.2	novel	0.20	27	108	27	108	y	0.32	33	69	33	69	y	0.26	7	20	7	20	y	0.23	32	105	32	105	y	0.23	23	78	23	78	y	0.39	7	11	7	11	y	0.11	8	67	8	67	n	0.30	6	14	6	14	y	0.21	21	81	21	81	y	0.18	29	133	29	133	y	0.22	16	58	16	58	y	0.21	23	89	23	89	y	ENSMUSG00000002769.10	Gnmt	chr17	protein_coding	glycine N-methyltransferase
novel_NIR_8720	chr17	47037106	47037532	-	47037234	47037532	A3SS	ENSMUST00000233086.2	novel	0.00	0	108	0	108	n	0.01	1	69	1	69	n	0.00	0	20	0	20	n	0.00	0	105	0	105	n	0.00	0	78	0	78	n	0.00	0	11	0	11	n	0.23	20	67	20	67	y	0.00	0	14	0	14	n	0.00	0	81	0	81	n	0.00	0	133	0	133	n	0.00	0	58	0	58	n	0.00	0	89	0	89	n	ENSMUSG00000002769.10	Gnmt	chr17	protein_coding	glycine N-methyltransferase
novel_NIR_8721	chr17	47037108	47037532	-	47037234	47037532	A3SS	ENSMUST00000233086.2	novel	0.65	205	108	205	108	y	0.74	200	69	200	69	y	0.69	45	20	45	20	y	0.65	192	105	192	105	y	0.60	118	78	118	78	y	0.80	44	11	44	11	y	0.65	127	67	127	67	y	0.75	41	14	41	14	y	0.64	146	81	146	81	y	0.60	200	133	200	133	y	0.73	158	58	158	58	y	0.70	208	89	208	89	y	ENSMUSG00000002769.10	Gnmt	chr17	protein_coding	glycine N-methyltransferase
novel_NIR_8722	chr17	47037229	47037532	-	47037234	47037532	A3SS	ENSMUST00000233086.2	novel	0.27	39	108	39	108	y	0.25	23	69	23	69	y	0.38	12	20	12	20	y	0.30	45	105	45	105	y	0.17	16	78	16	78	y	0.21	3	11	3	11	y	0.26	24	67	24	67	y	0.48	13	14	13	14	y	0.27	30	81	30	81	y	0.16	26	133	26	133	y	0.31	26	58	26	58	y	0.37	53	89	53	89	y	ENSMUSG00000002769.10	Gnmt	chr17	protein_coding	glycine N-methyltransferase
novel_NIR_8723	chr17	47054368	47058347	-	47058126	47058347	3pMXE	ENSMUST00000121671.2	novel	0.40	2	3	2	3	y	0.46	6	7	6	7	y	0.50	7	7	7	7	y	0.00	0	2	0	2	n	0.17	3	15	3	15	y	0.67	2	1	2	1	y	0.36	4	7	4	7	y	0.29	2	5	2	5	y	0.38	3	5	3	5	y	0.17	2	10	2	10	y	0.00	0	4	0	4	n	0.27	4	11	4	11	y	ENSMUSG00000023973.14	Cnpy3	chr17	protein_coding	canopy FGF signaling regulator 3
novel_NIR_8724	chr17	47278234	47279310	-	47278238	47279310	A3SS	ENSMUST00000113337.10	novel	0.08	4	49	4	49	n	0.06	2	29	2	29	n	0.15	10	56	10	56	y	0.00	0	76	0	76	n	0.01	1	72	1	72	n	0.04	1	23	1	23	n	0.07	3	40	3	40	n	0.08	3	33	3	33	n	0.08	4	46	4	46	n	0.05	3	58	3	58	n	0.08	3	33	3	33	n	0.05	4	73	4	73	n	ENSMUSG00000023977.16	Ubr2	chr17	protein_coding	ubiquitin protein ligase E3 component n-recognin 2
novel_NIR_8725	chr17	47680282	47681213	+	47680282	47683352	A3SS	ENSMUST00000060752.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000034729.17	Mrps10	chr17	protein_coding	mitochondrial ribosomal protein S10
novel_NIR_8726	chr17	47724512	47724641	-	47711371	47724641	A3SS	ENSMUST00000238764.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000118471.2	Gm50461	chr17	protein_coding	predicted gene, 50461
novel_NIR_8727	chr17	47724819	47741730	-	47724819	47725458	5pMXE	ENSMUST00000125507.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000047150.9	1700001C19Rik	chr17	protein_coding	RIKEN cDNA 1700001C19 gene
novel_NIR_8728	chr17	47724819	47741730	-	47724819	47732712	5pMXE	ENSMUST00000238764.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000118471.2	Gm50461	chr17	protein_coding	predicted gene, 50461
novel_NIR_8729	chr17	47804390	47804487	-	47794759	47804487	A3SS	ENSMUST00000233174.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000023980.8	Taf8	chr17	protein_coding	TATA-box binding protein associated factor 8
novel_NIR_8730	chr17	47804390	47804487	-	47801207	47804487	A3SS	ENSMUST00000067103.4	novel	0.14	1	6	1	6	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.07	1	13	1	13	n	0.08	1	12	1	12	n	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.45	5	6	5	6	y	0.00	0	7	0	7	n	0.12	2	15	2	15	n	ENSMUSG00000023980.8	Taf8	chr17	protein_coding	TATA-box binding protein associated factor 8
novel_NIR_8731	chr17	47889717	47896972	+	47889717	47904534	A3SS	ENSMUST00000183044.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.22	2	7	2	7	y	0.17	1	5	1	5	n	0.29	2	5	2	5	y	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.11	1	8	1	8	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.40	2	3	2	3	y	ENSMUSG00000034165.17	Ccnd3	chr17	protein_coding	cyclin D3
novel_NIR_8732	chr17	47889717	47896972	+	47889717	47904570	A3SS	ENSMUST00000182129.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.25	2	6	2	6	y	0.50	1	1	1	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000034165.17	Ccnd3	chr17	protein_coding	cyclin D3
novel_NIR_8733	chr17	47889717	47896972	+	47889717	47904579	A3SS	ENSMUST00000182848.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.50	1	1	1	1	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	ENSMUSG00000034165.17	Ccnd3	chr17	protein_coding	cyclin D3
novel_NIR_8734	chr17	47901978	47904570	+	47889698	47904570	A5SS	ENSMUST00000182506.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034165.17	Ccnd3	chr17	protein_coding	cyclin D3
novel_NIR_8735	chr17	47901978	47904570	+	47889717	47904570	A5SS	ENSMUST00000182129.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000034165.17	Ccnd3	chr17	protein_coding	cyclin D3
novel_NIR_8736	chr17	47905015	47905659	+	47905330	47905659	5pMXE	ENSMUST00000183158.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000034165.17	Ccnd3	chr17	protein_coding	cyclin D3
novel_NIR_8737	chr17	47997909	47998113	-	47997987	47998113	A3SS	ENSMUST00000113301.2	novel	0.00	0	42	0	42	n	0.04	1	22	1	22	n	0.00	0	47	0	47	n	0.04	2	46	2	46	n	0.00	0	39	0	39	n	0.00	0	23	0	23	n	0.00	0	50	0	50	n	0.00	0	26	0	26	n	0.27	16	43	16	43	y	0.00	0	52	0	52	n	0.00	0	40	0	40	n	0.00	0	45	0	45	n	ENSMUSG00000033475.16	Tomm6	chr17	protein_coding	translocase of outer mitochondrial membrane 6
novel_NIR_8738	chr17	48011403	48012548	+	48010620	48012548	A5SS	ENSMUST00000113296.8	novel	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.33	2	4	2	4	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	1.00	2	0	2	0	y	0.00	0	4	0	4	n	ENSMUSG00000023266.12	Frs3	chr17	protein_coding	fibroblast growth factor receptor substrate 3
novel_NIR_8739	chr17	48191766	48199050	-	48191817	48199050	A3SS	ENSMUST00000113265.8	novel	0.17	5	24	5	24	y	0.04	1	22	1	22	n	0.11	7	57	7	57	n	0.13	5	34	5	34	n	0.00	0	61	0	61	n	0.05	2	40	2	40	n	0.00	0	36	0	36	n	0.04	1	27	1	27	n	0.04	1	26	1	26	n	0.11	4	34	4	34	n	0.00	0	29	0	29	n	0.00	0	35	0	35	n	ENSMUSG00000023991.17	Foxp4	chr17	protein_coding	forkhead box P4
novel_NIR_8740	chr17	48199145	48207634	-	48199145	48199322	5pMXE	ENSMUST00000136314.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023991.17	Foxp4	chr17	protein_coding	forkhead box P4
novel_NIR_8741	chr17	48215459	48234921	-	48215459	48235131	A5SS	ENSMUST00000113265.8	novel	0.09	3	30	3	30	n	0.00	0	20	0	20	n	0.06	3	50	3	50	n	0.00	0	40	0	40	n	0.03	1	34	1	34	n	0.15	5	29	5	29	y	0.08	2	24	2	24	n	0.04	1	25	1	25	n	0.00	0	17	0	17	n	0.05	2	37	2	37	n	0.00	0	20	0	20	n	0.03	1	38	1	38	n	ENSMUSG00000023991.17	Foxp4	chr17	protein_coding	forkhead box P4
novel_NIR_8742	chr17	48554936	48556577	+	48554922	48556577	A5SS	ENSMUST00000048065.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041754.6	Trem3	chr17	protein_coding	triggering receptor expressed on myeloid cells 3
novel_NIR_8743	chr17	48717122	48717856	+	48717265	48717856	A5SS	ENSMUST00000046651.7	novel	0.42	8	11	8	11	y	0.05	1	20	1	20	n	0.28	7	18	7	18	y	0.06	1	16	1	16	n	0.26	5	14	5	14	y	0.19	3	13	3	13	y	0.20	6	24	6	24	y	0.00	0	11	0	11	n	0.20	4	16	4	16	y	0.32	7	15	7	15	y	0.42	5	7	5	7	y	0.00	0	12	0	12	n	ENSMUSG00000040771.15	Oard1	chr17	protein_coding	O-acyl-ADP-ribose deacylase 1
novel_NIR_8744	chr17	48717122	48717856	+	48717400	48717856	A5SS	ENSMUST00000167180.8	novel	0.15	8	46	8	46	y	0.03	1	30	1	30	n	0.24	7	22	7	22	y	0.02	1	40	1	40	n	0.12	5	35	5	35	n	0.17	3	15	3	15	y	0.10	6	52	6	52	n	0.00	0	10	0	10	n	0.11	4	31	4	31	n	0.13	7	45	7	45	n	0.12	5	36	5	36	n	0.00	0	43	0	43	n	ENSMUSG00000040771.15	Oard1	chr17	protein_coding	O-acyl-ADP-ribose deacylase 1
novel_NIR_8745	chr17	48717265	48717853	+	48717265	48717856	A3SS	ENSMUST00000046651.7	novel	0.27	4	11	4	11	y	0.09	2	20	2	20	n	0.00	0	18	0	18	n	0.06	1	16	1	16	n	0.00	0	14	0	14	n	0.24	4	13	4	13	y	0.38	15	24	15	24	y	0.08	1	11	1	11	n	0.16	3	16	3	16	y	0.17	3	15	3	15	y	0.30	3	7	3	7	y	0.33	6	12	6	12	y	ENSMUSG00000040771.15	Oard1	chr17	protein_coding	O-acyl-ADP-ribose deacylase 1
novel_NIR_8746	chr17	48717400	48717853	+	48717400	48717856	A3SS	ENSMUST00000167180.8	novel	0.22	13	46	13	46	y	0.21	8	30	8	30	y	0.27	8	22	8	22	y	0.32	19	40	19	40	y	0.20	9	35	9	35	y	0.21	4	15	4	15	y	0.30	22	52	22	52	y	0.33	5	10	5	10	y	0.09	3	31	3	31	n	0.25	15	45	15	45	y	0.23	11	36	11	36	y	0.27	16	43	16	43	y	ENSMUSG00000040771.15	Oard1	chr17	protein_coding	O-acyl-ADP-ribose deacylase 1
novel_NIR_8747	chr17	49017103	49041035	-	49038638	49041035	3pMXE	ENSMUST00000209681.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000110276.2	Gm45330	chr17	lncRNA	predicted gene 45330
novel_NIR_8748	chr17	49043456	49043599	-	49043456	49045445	A5SS	ENSMUST00000209681.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000110276.2	Gm45330	chr17	lncRNA	predicted gene 45330
novel_NIR_8749	chr17	49742290	49746454	+	49742290	49744739	3pMXE	ENSMUST00000165390.9	novel	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	2	0	2	n	1.00	5	0	5	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000064120.15	Mocs1	chr17	protein_coding	molybdenum cofactor synthesis 1
novel_NIR_8750	chr17	49746634	49756128	+	49746624	49756128	A5SS	ENSMUST00000173362.8	novel	1.00	17	0	17	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	7	0	7	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	11	0	11	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000064120.15	Mocs1	chr17	protein_coding	molybdenum cofactor synthesis 1
novel_NIR_8751	chr17	51146768	51159561	-	51120869	51159561	A3SS	ENSMUST00000024717.10	novel	0.09	1	10	1	10	n	0.14	1	6	1	6	n	0.12	2	14	2	14	n	0.05	1	19	1	19	n	0.17	4	20	4	20	y	0.00	0	8	0	8	n	0.15	2	11	2	11	y	0.12	1	7	1	7	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	ENSMUSG00000023923.11	Tbc1d5	chr17	protein_coding	TBC1 domain family, member 5
novel_NIR_8752	chr17	5463779	5483717	-	5483025	5483717	3pMXE	ENSMUST00000188282.7	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.50	1	1	1	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	1.00	1	0	1	0	n	ENSMUSG00000004945.16	Tmem242	chr17	protein_coding	transmembrane protein 242
novel_NIR_8753	chr17	5471290	5483717	-	5483025	5483717	3pMXE	ENSMUST00000188282.7	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.75	3	1	3	1	y	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.17	1	5	1	5	n	-	-	-	-	-	-	ENSMUSG00000004945.16	Tmem242	chr17	protein_coding	transmembrane protein 242
novel_NIR_8754	chr17	55971405	55972662	-	55971405	55972648	A5SS	ENSMUST00000233802.2	novel	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.50	1	1	1	1	n	0.00	0	10	0	10	n	0.50	3	3	3	3	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.14	1	6	1	6	n	ENSMUSG00000024174.10	Pot1b	chr17	protein_coding	protection of telomeres 1B
novel_NIR_8755	chr17	56175685	56184219	-	56175685	56185860	A5SS	ENSMUST00000079642.8	novel	0.40	4	6	4	6	y	0.57	4	3	4	3	y	0.42	5	7	5	7	y	0.14	1	6	1	6	n	0.20	2	8	2	8	y	0.57	4	3	4	3	y	0.11	1	8	1	8	n	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.20	2	8	2	8	y	0.33	1	2	1	2	n	0.00	0	3	0	3	n	ENSMUSG00000057835.8	Zfp119a	chr17	protein_coding	zinc finger protein 119a
novel_NIR_8756	chr17	56175685	56185414	-	56175685	56185860	A5SS	ENSMUST00000079642.8	novel	0.14	1	6	1	6	n	0.25	1	3	1	3	n	0.22	2	7	2	7	y	0.33	3	6	3	6	y	0.27	3	8	3	8	y	0.62	5	3	5	3	y	0.27	3	8	3	8	y	0.70	7	3	7	3	y	0.00	0	5	0	5	n	0.47	7	8	7	8	y	0.60	3	2	3	2	y	0.67	6	3	6	3	y	ENSMUSG00000057835.8	Zfp119a	chr17	protein_coding	zinc finger protein 119a
novel_NIR_8757	chr17	56175685	56185418	-	56175685	56185860	A5SS	ENSMUST00000079642.8	novel	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.50	3	3	3	3	y	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000057835.8	Zfp119a	chr17	protein_coding	zinc finger protein 119a
novel_NIR_8758	chr17	56175685	56185504	-	56175685	56185860	A5SS	ENSMUST00000079642.8	novel	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.14	1	6	1	6	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.40	2	3	2	3	y	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000057835.8	Zfp119a	chr17	protein_coding	zinc finger protein 119a
novel_NIR_8759	chr17	56199632	56199758	+	56199186	56199758	A5SS	ENSMUST00000224379.2	novel	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.50	6	6	6	6	y	0.67	6	3	6	3	y	0.54	7	6	7	6	y	0.78	7	2	7	2	y	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.67	2	1	2	1	y	0.18	3	14	3	14	y	0.60	3	2	3	2	y	1.00	3	0	3	0	y	ENSMUSG00000003198.11	Zfp959	chr17	protein_coding	zinc finger protein 959
novel_NIR_8760	chr17	56203201	56204299	+	56203201	56204156	A3SS	ENSMUST00000224379.2	novel	0.20	2	8	2	8	y	0.00	0	6	0	6	n	0.00	0	24	0	24	n	0.00	0	16	0	16	n	0.04	1	24	1	24	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.00	0	21	0	21	n	0.00	0	8	0	8	n	0.00	0	16	0	16	n	ENSMUSG00000003198.11	Zfp959	chr17	protein_coding	zinc finger protein 959
novel_NIR_8761	chr17	56312814	56316330	+	56312814	56317277	A3SS	ENSMUST00000133998.8	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.50	3	3	3	3	y	1.00	6	0	6	0	n	0.67	4	2	4	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	4	0	4	0	n	ENSMUSG00000003199.17	Mpnd	chr17	protein_coding	MPN domain containing
novel_NIR_8762	chr17	56312814;56316557	56316330;56317277	+	56312814	56317277	cassetteExon	ENSMUST00000133998.8	novel	1.00	0.5	0	1;0	0	n	1.00	0.5	0	1;0	0	n	0.33	1.5	3	3;0	3	n	1.00	9.0	0	6;12	0	y	0.75	6.0	2	4;8	2	y	-	-	-	-	-	-	1.00	0.5	0	1;0	0	n	-	-	-	-	-	-	1.00	1.0	0	2;0	0	n	-	-	-	-	-	-	1.00	2.0	0	4;0	0	n	1.00	2.5	0	4;1	0	n	ENSMUSG00000003199.17	Mpnd	chr17	protein_coding	MPN domain containing
novel_NIR_8763	chr17	56319492	56321950	+	56319492	56322028	A3SS	ENSMUST00000159340.8	novel	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	ENSMUSG00000003199.17	Mpnd	chr17	protein_coding	MPN domain containing
novel_NIR_8764	chr17	56377559	56377652	-	56377254	56377652	A3SS	ENSMUST00000153947.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000019578.12	Ubxn6	chr17	protein_coding	UBX domain protein 6
novel_NIR_8765	chr17	56380236	56381176	-	56380236	56381424	A5SS	ENSMUST00000139371.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000019578.12	Ubxn6	chr17	protein_coding	UBX domain protein 6
novel_NIR_8766	chr17	56410297	56415588	-	56410297;56414374	56410417;56415588	ES	ENSMUST00000238734.2	novel	0.00	0	4.5	0	7;2	n	0.00	0	4.5	0	5;4	n	0.06	1	17.0	1	23;11	n	0.00	0	1.5	0	3;0	n	0.00	0	3.5	0	5;2	n	0.35	4	7.5	4	6;9	y	0.02	1	40.0	1	46;34	n	0.00	0	5.0	0	5;5	n	0.00	0	2.0	0	3;1	n	0.15	2	11.0	2	18;4	y	0.00	0	2.5	0	3;2	n	0.36	2	3.5	2	2;5	y	ENSMUSG00000002831.15	Plin4	chr17	protein_coding	perilipin 4
novel_NIR_8767	chr17	56411511	56413096	-	56412501	56413096	A3SS	ENSMUST00000190703.7	novel	0.78	7	2	7	2	y	0.00	0	2	0	2	n	0.22	2	7	2	7	y	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.08	1	11	1	11	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000002831.15	Plin4	chr17	protein_coding	perilipin 4
novel_NIR_8768	chr17	56412105	56413096	-	56412501	56413096	A3SS	ENSMUST00000190703.7	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.59	10	7	10	7	y	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.33	1	2	1	2	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000002831.15	Plin4	chr17	protein_coding	perilipin 4
novel_NIR_8769	chr17	56416605	56418600	-	56416605	56416693	5pMXE	ENSMUST00000002908.8	novel	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	14	0	14	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	27	0	27	n	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000002831.15	Plin4	chr17	protein_coding	perilipin 4
novel_NIR_8770	chr17	56416605	56419870	-	56416605	56416693	5pMXE	ENSMUST00000002908.8	novel	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.00	0	14	0	14	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.29	2	5	2	5	y	0.00	0	27	0	27	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.07	1	13	1	13	n	0.25	1	3	1	3	n	0.00	0	4	0	4	n	ENSMUSG00000002831.15	Plin4	chr17	protein_coding	perilipin 4
novel_NIR_8771	chr17	56469606	56484438	+	56469606	56478707	3pMXE	ENSMUST00000077788.7	novel	0.16	7	38	7	38	y	0.11	7	56	7	56	n	0.05	2	36	2	36	n	0.06	4	66	4	66	n	0.16	15	81	15	81	y	0.02	1	55	1	55	n	0.11	10	80	10	80	n	0.06	3	44	3	44	n	0.25	15	46	15	46	y	0.12	11	79	11	79	n	0.07	5	63	5	63	n	0.12	5	35	5	35	n	ENSMUSG00000044469.9	Tnfaip8l1	chr17	protein_coding	tumor necrosis factor, alpha-induced protein 8-like 1
novel_NIR_8772	chr17	56489715	56490611	-	56489715	56490311	A5SS	ENSMUST00000151093.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	ENSMUSG00000019579.14	Mydgf	chr17	protein_coding	myeloid derived growth factor
novel_NIR_8773	chr17	56496461	56496990	-	56496880	56496990	A3SS&ES	ENSMUST00000223616.2	novel	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.22	7	25	7	25	y	0.43	3	4	3	4	y	0.00	0	13	0	13	n	0.00	0	17	0	17	n	0.00	0	11	0	11	n	0.00	0	17	0	17	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	ENSMUSG00000001229.10	Dpp9	chr17	protein_coding	dipeptidylpeptidase 9
novel_NIR_8774	chr17	56524461	56524682	-	56524461	56525741	A5SS	ENSMUST00000038794.6	novel	0.06	3	46	3	46	n	0.03	1	32	1	32	n	0.17	28	137	28	137	y	0.03	2	57	2	57	n	0.06	5	80	5	80	n	0.22	21	73	21	73	y	0.02	1	58	1	58	n	0.17	12	57	12	57	y	0.04	2	44	2	44	n	0.04	2	48	2	48	n	0.00	0	37	0	37	n	0.00	0	59	0	59	n	ENSMUSG00000001229.10	Dpp9	chr17	protein_coding	dipeptidylpeptidase 9
novel_NIR_8775	chr17	56679527;56681326	56681239;56682854	+	56679527	56682854	cassetteExon	ENSMUST00000025036.11	novel	0.00	0.0	22	0;0	22	n	0.00	0.0	5	0;0	5	n	0.04	1.0	25	2;0	25	n	0.00	0.0	17	0;0	17	n	0.00	0.0	23	0;0	23	n	0.00	0.0	9	0;0	9	n	0.00	0.0	20	0;0	20	n	0.00	0.0	7	0;0	7	n	0.00	0.0	9	0;0	9	n	0.00	0.0	22	0;0	22	n	0.22	2.5	9	3;2	9	y	0.00	0.0	14	0;0	14	n	ENSMUSG00000024201.13	Kdm4b	chr17	protein_coding	lysine (K)-specific demethylase 4B
novel_NIR_8776	chr17	56708300	56708546	+	56708315	56708546	A5SS	ENSMUST00000025036.11	novel	0.00	0	15	0	15	n	0.27	3	8	3	8	y	0.00	0	28	0	28	n	0.00	0	24	0	24	n	0.00	0	19	0	19	n	0.00	0	9	0	9	n	0.04	1	25	1	25	n	0.00	0	14	0	14	n	0.21	3	11	3	11	y	0.20	4	16	4	16	y	0.00	0	19	0	19	n	0.00	0	21	0	21	n	ENSMUSG00000024201.13	Kdm4b	chr17	protein_coding	lysine (K)-specific demethylase 4B
novel_NIR_8777	chr17	56868206	56869195	-	56868206	56870362	A5SS	ENSMUST00000142752.8	novel	1.00	3	0	3	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000042625.17	Safb2	chr17	protein_coding	scaffold attachment factor B2
novel_NIR_8778	chr17	56870618	56871504	-	56870431	56871504	A3SS	ENSMUST00000142940.8	novel	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000042625.17	Safb2	chr17	protein_coding	scaffold attachment factor B2
novel_NIR_8779	chr17	56876022	56877934	-	56876022	56878257	A5SS	ENSMUST00000144255.8	novel	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	6	0	6	0	y	ENSMUSG00000042625.17	Safb2	chr17	protein_coding	scaffold attachment factor B2
novel_NIR_8780	chr17	56876022	56878205	-	56876022	56878257	A5SS	ENSMUST00000144255.8	novel	0.89	8	1	8	1	y	1.00	7	0	7	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	1.00	3	0	3	0	y	ENSMUSG00000042625.17	Safb2	chr17	protein_coding	scaffold attachment factor B2
novel_NIR_8781	chr17	56878549	56881023	-	56878549	56881903	A5SS	ENSMUST00000144255.8	novel	0.50	3	3	3	3	y	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	ENSMUSG00000042625.17	Safb2	chr17	protein_coding	scaffold attachment factor B2
novel_NIR_8782	chr17	56881302	56883878	-	56881952	56883878	A3SS&ES	ENSMUST00000144255.8	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.27	3	8	3	8	y	0.00	0	11	0	11	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	6	0	6	n	ENSMUSG00000042625.17	Safb2	chr17	protein_coding	scaffold attachment factor B2
novel_NIR_8783	chr17	56892043	56892136	+	56892043	56892187	A3SS	ENSMUST00000182800.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.14	1	6	1	6	n	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.25	1	3	1	3	n	ENSMUSG00000071054.13	Safb	chr17	protein_coding	scaffold attachment factor B
novel_NIR_8784	chr17	56907971	56908030	+	56907971	56908056	A3SS	ENSMUST00000182951.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.25	1	3	1	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.12	1	7	1	7	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000071054.13	Safb	chr17	protein_coding	scaffold attachment factor B
novel_NIR_8785	chr17	56916048	56916640	-	56916332	56916640	A3SS	ENSMUST00000233299.2	novel	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000049760.7	Micos13	chr17	protein_coding	mitochondrial contact site and cristae organizing system subunit 13
novel_NIR_8786	chr17	56916299	56916640	-	56916332	56916640	A3SS	ENSMUST00000233299.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.33	2	4	2	4	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	1	0	1	0	n	ENSMUSG00000049760.7	Micos13	chr17	protein_coding	mitochondrial contact site and cristae organizing system subunit 13
novel_NIR_8787	chr17	56967245	56969662	+	56967245;56968370	56968242;56969662	ES	ENSMUST00000112979.4	novel	0.00	0	1.0	0	1;1	n	0.00	0	0.5	0	0;1	n	-	-	-	-	-	-	0.00	0	1.0	0	1;1	n	0.38	3	5.0	3	2;8	y	0.00	0	2.5	0	4;1	n	0.00	0	2.0	0	1;3	n	0.00	0	1.5	0	3;0	n	0.00	0	4.5	0	2;7	n	0.00	0	4.5	0	2;7	n	0.00	0	0.5	0	0;1	n	0.00	0	4.5	0	6;3	n	ENSMUSG00000040828.11	Catsperd	chr17	protein_coding	cation channel sperm associated auxiliary subunit delta
novel_NIR_8788	chr17	56999721	57001220	+	56999721	57003602	A3SS	ENSMUST00000233319.2	novel	0.00	0	13	0	13	n	0.00	0	13	0	13	n	0.17	2	10	2	10	y	0.00	0	15	0	15	n	0.00	0	25	0	25	n	0.00	0	15	0	15	n	0.08	2	22	2	22	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.07	2	26	2	26	n	0.17	2	10	2	10	y	0.00	0	18	0	18	n	ENSMUSG00000002372.10	Ranbp3	chr17	protein_coding	RAN binding protein 3
novel_NIR_8789	chr17	57008088	57009763	+	57003789	57009763	A5SS	ENSMUST00000232975.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000002372.10	Ranbp3	chr17	protein_coding	RAN binding protein 3
novel_NIR_8790	chr17	57013965	57014168	+	57013965	57014851	A3SS	ENSMUST00000232975.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000002372.10	Ranbp3	chr17	protein_coding	RAN binding protein 3
novel_NIR_8791	chr17	57024837	57028035	+	57024837	57028077	A3SS	ENSMUST00000233457.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000002379.8	Ndufa11	chr17	protein_coding	NADH:ubiquinone oxidoreductase subunit A11
novel_NIR_8792	chr17	57024942	57028077	+	57024837	57028077	A5SS	ENSMUST00000233457.2	novel	0.00	0	1	0	1	n	0.50	1	1	1	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	0.00	0	1	0	1	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	5	0	5	0	y	0.50	1	1	1	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000002379.8	Ndufa11	chr17	protein_coding	NADH:ubiquinone oxidoreductase subunit A11
novel_NIR_8793	chr17	57028127	57028366	+	57028127	57028359	A3SS	ENSMUST00000233832.2	novel	0.08	3	33	3	33	n	0.08	3	36	3	36	n	0.30	8	19	8	19	y	0.17	7	35	7	35	y	0.00	0	33	0	33	n	0.00	0	25	0	25	n	0.20	11	45	11	45	y	0.14	2	12	2	12	n	0.05	1	18	1	18	n	0.20	13	51	13	51	y	0.15	9	50	9	50	y	0.33	14	29	14	29	y	ENSMUSG00000002379.8	Ndufa11	chr17	protein_coding	NADH:ubiquinone oxidoreductase subunit A11
novel_NIR_8794	chr17	57071889	57072525	+	57071840	57072525	A5SS	ENSMUST00000233290.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000007603.10	Dus3l	chr17	protein_coding	dihydrouridine synthase 3-like (S. cerevisiae)
novel_NIR_8795	chr17	57234195	57242263	-	57234172	57242263	A3SS	ENSMUST00000025053.10	novel	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	20	0	20	n	0.00	0	16	0	16	n	0.00	0	21	0	21	n	0.00	0	8	0	8	n	0.00	0	19	0	19	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.17	2	10	2	10	y	ENSMUSG00000024212.10	Mllt1	chr17	protein_coding	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1
novel_NIR_8796	chr17	57318014	57318109	-	57318022	57318109	A3SS	ENSMUST00000002733.7	novel	0.02	1	46	1	46	n	0.11	6	49	6	49	n	0.16	8	42	8	42	y	0.10	4	36	4	36	n	0.11	8	63	8	63	n	0.09	4	40	4	40	n	0.00	0	35	0	35	n	0.00	0	38	0	38	n	0.10	5	47	5	47	n	0.06	3	48	3	48	n	0.03	1	37	1	37	n	0.02	1	41	1	41	n	ENSMUSG00000002658.10	Gtf2f1	chr17	protein_coding	general transcription factor IIF, polypeptide 1
novel_NIR_8797	chr17	57351437	57354186	-	57352640	57354186	3pMXE	ENSMUST00000163442.8	novel	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	17	0	17	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.27	3	8	3	8	y	0.00	0	6	0	6	n	ENSMUSG00000046329.15	Slc25a23	chr17	protein_coding	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23
novel_NIR_8798	chr17	57352601	57354186	-	57352640	57354186	A3SS	ENSMUST00000163442.8	novel	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.39	9	14	9	14	y	0.00	0	7	0	7	n	0.26	6	17	6	17	y	0.00	0	5	0	5	n	0.79	15	4	15	4	y	0.50	9	9	9	9	y	0.64	14	8	14	8	y	0.00	0	6	0	6	n	ENSMUSG00000046329.15	Slc25a23	chr17	protein_coding	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23
novel_NIR_8799	chr17	57359820	57360241	-	57359840	57360241	A3SS	ENSMUST00000170015.8	novel	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.00	0	19	0	19	n	-	-	-	-	-	-	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.64	9	5	9	5	y	0.00	0	21	0	21	n	-	-	-	-	-	-	0.00	0	15	0	15	n	ENSMUSG00000046329.15	Slc25a23	chr17	protein_coding	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23
novel_NIR_8800	chr17	57499939	57516239	-	57499939	57500857	5pMXE	ENSMUST00000005976.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	8	0	8	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000005824.8	Tnfsf14	chr17	protein_coding	tumor necrosis factor (ligand) superfamily, member 14
novel_NIR_8801	chr17	57511105	57511314	-	57511105	57528998	A5SS	ENSMUST00000177425.2	novel	0.00	0	57	0	57	n	0.00	0	74	0	74	n	0.00	0	83	0	83	n	0.36	16	29	16	29	y	0.00	0	106	0	106	n	0.00	0	69	0	69	n	0.00	0	88	0	88	n	0.00	0	83	0	83	n	0.00	0	30	0	30	n	0.00	0	56	0	56	n	0.00	0	45	0	45	n	0.00	0	51	0	51	n	ENSMUSG00000024164.16	C3	chr17	protein_coding	complement component 3
novel_NIR_8802	chr17	57516642	57517165	-	57516642	57533831	A5SS	ENSMUST00000177046.2	novel	-	-	-	-	-	-	0.00	0	14	0	14	n	0.67	33	16	33	16	y	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.53	10	9	10	9	y	ENSMUSG00000024164.16	C3	chr17	protein_coding	complement component 3
novel_NIR_8803	chr17	57525940	57527973	-	57525940	57526966	5pMXE	ENSMUST00000176457.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.71	5	2	5	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000024164.16	C3	chr17	protein_coding	complement component 3
novel_NIR_8804	chr17	57525940	57528889	-	57525940	57526966	5pMXE	ENSMUST00000176457.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.94	31	2	31	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000024164.16	C3	chr17	protein_coding	complement component 3
novel_NIR_8805	chr17	57552561	57557742	+	57556571	57557742	5pMXE	ENSMUST00000224947.2	novel	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	17	0	17	n	0.09	1	10	1	10	n	0.00	0	22	0	22	n	0.00	0	7	0	7	n	0.00	0	45	0	45	n	0.33	3	6	3	6	y	0.00	0	8	0	8	n	0.00	0	16	0	16	n	0.17	1	5	1	5	n	0.05	1	21	1	21	n	ENSMUSG00000019487.12	Trip10	chr17	protein_coding	thyroid hormone receptor interactor 10
novel_NIR_8806	chr17	57553883	57554305	-	57553883	57555107	A5SS	ENSMUST00000233492.2	novel	0.29	2	5	2	5	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000005823.10	Gpr108	chr17	protein_coding	G protein-coupled receptor 108
novel_NIR_8807	chr17	5781849	5791291	+	5781849	5802967	A3SS	ENSMUST00000089185.6	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.29	2	5	2	5	y	0.29	2	5	2	5	y	0.00	0	2	0	2	n	ENSMUSG00000034265.9	Zdhhc14	chr17	protein_coding	zinc finger, DHHC domain containing 14
novel_NIR_8808	chr17	5781849	5803012	+	5781849	5802967	A3SS	ENSMUST00000089185.6	novel	1.00	9	0	9	0	y	0.80	8	2	8	2	y	1.00	2	0	2	0	y	0.67	6	3	6	3	y	0.56	9	7	9	7	y	0.75	3	1	3	1	y	0.70	7	3	7	3	y	0.57	4	3	4	3	y	0.60	3	2	3	2	y	0.50	5	5	5	5	y	0.29	2	5	2	5	y	0.83	10	2	10	2	y	ENSMUSG00000034265.9	Zdhhc14	chr17	protein_coding	zinc finger, DHHC domain containing 14
novel_NIR_8809	chr17	6102056	6106882	-	6102106	6106882	A3SS	ENSMUST00000097432.10	novel	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.50	1	1	1	1	n	0.33	2	4	2	4	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.50	3	3	3	3	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000015659.13	Serac1	chr17	protein_coding	serine active site containing 1
novel_NIR_8810	chr17	6110640	6115224	-	6110640;6111936	6111823;6115224	ES	ENSMUST00000097432.10	novel	0.00	0	0.5	0	0;1	n	0.00	0	0.5	0	1;0	n	0.50	1	1.0	1	0;2	n	0.00	0	2.0	0	3;1	n	0.00	0	2.5	0	3;2	n	0.00	0	3.0	0	2;4	n	0.33	1	2.0	1	3;1	n	0.00	0	1.0	0	1;1	n	0.22	1	3.5	1	1;6	n	0.31	2	4.5	2	3;6	y	0.00	0	3.5	0	5;2	n	0.00	0	3.0	0	3;3	n	ENSMUSG00000015659.13	Serac1	chr17	protein_coding	serine active site containing 1
novel_NIR_8811	chr17	6130871	6131077	+	6130349	6131077	A5SS	ENSMUST00000100955.3	novel	0.14	2	12	2	12	n	0.27	4	11	4	11	y	0.05	1	18	1	18	n	0.07	1	13	1	13	n	0.16	3	16	3	16	y	0.20	1	4	1	4	n	0.14	1	6	1	6	n	0.00	0	8	0	8	n	0.21	3	11	3	11	y	0.23	6	20	6	20	y	0.17	4	19	4	19	y	0.18	3	14	3	14	y	ENSMUSG00000034345.15	Gtf2h5	chr17	protein_coding	general transcription factor IIH, polypeptide 5
novel_NIR_8812	chr17	6168641	6227104	+	6156857	6227104	A5SS	ENSMUST00000142030.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034377.11	Tulp4	chr17	protein_coding	tubby like protein 4
novel_NIR_8813	chr17	6168641	6227104	+	6157271	6227104	A5SS	ENSMUST00000149756.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000034377.11	Tulp4	chr17	protein_coding	tubby like protein 4
novel_NIR_8814	chr17	6168641	6227104	+	6168641	6171470	3pMXE	ENSMUST00000151732.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034377.11	Tulp4	chr17	protein_coding	tubby like protein 4
novel_NIR_8815	chr17	6168641	6227104	+	6168641	6172103	3pMXE	ENSMUST00000145340.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.38	3	5	3	5	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000034377.11	Tulp4	chr17	protein_coding	tubby like protein 4
novel_NIR_8816	chr17	6171953	6172103	+	6156857	6172103	A5SS	ENSMUST00000149838.8	novel	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000034377.11	Tulp4	chr17	protein_coding	tubby like protein 4
novel_NIR_8817	chr17	6171953	6172103	+	6157271	6172103	A5SS	ENSMUST00000146758.8	novel	0.27	6	16	6	16	y	0.00	0	11	0	11	n	0.00	0	20	0	20	n	0.33	5	10	5	10	y	0.00	0	25	0	25	n	0.00	0	13	0	13	n	0.07	1	13	1	13	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	18	0	18	n	0.00	0	7	0	7	n	0.00	0	23	0	23	n	ENSMUSG00000034377.11	Tulp4	chr17	protein_coding	tubby like protein 4
novel_NIR_8818	chr17	6171953	6172103	+	6158063	6172103	A5SS	ENSMUST00000126982.8	novel	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000034377.11	Tulp4	chr17	protein_coding	tubby like protein 4
novel_NIR_8819	chr17	6171953	6172103	+	6168641	6172103	A5SS	ENSMUST00000145340.8	novel	1.00	6	0	6	0	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.83	5	1	5	1	y	0.00	0	5	0	5	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000034377.11	Tulp4	chr17	protein_coding	tubby like protein 4
novel_NIR_8820	chr17	6172619	6174755	+	6172619	6174446	A3SS&ES	ENSMUST00000144124.2	novel	0.23	3	10	3	10	y	0.00	0	17	0	17	n	0.00	0	13	0	13	n	0.08	1	12	1	12	n	0.28	5	13	5	13	y	0.29	2	5	2	5	y	0.36	8	14	8	14	y	0.33	3	6	3	6	y	0.40	8	12	8	12	y	0.22	4	14	4	14	y	0.00	0	12	0	12	n	0.15	3	17	3	17	y	ENSMUSG00000034377.11	Tulp4	chr17	protein_coding	tubby like protein 4
novel_NIR_8821	chr17	6172619	6174755	+	6172619	6187486	A3SS	ENSMUST00000149838.8	novel	0.75	3	1	3	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.83	5	1	5	1	y	1.00	2	0	2	0	y	1.00	8	0	8	0	y	1.00	3	0	3	0	y	1.00	8	0	8	0	y	0.80	4	1	4	1	y	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000034377.11	Tulp4	chr17	protein_coding	tubby like protein 4
novel_NIR_8822	chr17	6172619	6174932	+	6172619	6187486	A3SS	ENSMUST00000149838.8	novel	0.67	2	1	2	1	y	1.00	6	0	6	0	y	0.82	9	2	9	2	y	-	-	-	-	-	-	0.80	4	1	4	1	y	1.00	1	0	1	0	n	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	1.00	4	0	4	0	y	1.00	5	0	5	0	y	ENSMUSG00000034377.11	Tulp4	chr17	protein_coding	tubby like protein 4
novel_NIR_8823	chr17	6172619	6174932	+	6172619;6174523	6174446;6174932	ES	ENSMUST00000144124.2	novel	0.17	2	10.0	2	10;10	y	0.29	6	15.0	6	17;13	y	0.38	9	14.5	9	13;16	y	0.00	0	9.0	0	12;6	n	0.23	4	13.5	4	13;14	y	0.15	1	5.5	1	5;6	n	0.31	6	13.5	6	14;13	y	0.00	0	6.0	0	6;6	n	0.00	0	12.5	0	12;13	n	0.16	3	15.5	3	14;17	y	0.25	4	12.0	4	12;12	y	0.23	5	16.5	5	17;16	y	ENSMUSG00000034377.11	Tulp4	chr17	protein_coding	tubby like protein 4
novel_NIR_8824	chr17	6174523	6174755	+	6174523	6174932	A3SS	ENSMUST00000144124.2	novel	0.00	0	10	0	10	n	0.13	2	13	2	13	n	0.20	4	16	4	16	y	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.00	0	17	0	17	n	0.00	0	12	0	12	n	0.06	1	16	1	16	n	ENSMUSG00000034377.11	Tulp4	chr17	protein_coding	tubby like protein 4
novel_NIR_8825	chr17	62958129	63091626	-	62958129	63188001	A5SS	ENSMUST00000076840.12	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.67	4	2	4	2	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.75	6	2	6	2	y	0.75	3	1	3	1	y	1.00	5	0	5	0	y	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	7	0	7	0	y	1.00	2	0	2	0	y	ENSMUSG00000048915.13	Efna5	chr17	protein_coding	ephrin A5
novel_NIR_8826	chr17	64288681	64336285	+	64288681;64298711	64298589;64336285	ES	ENSMUST00000232945.2	novel	0.17	2	9.5	2	9;10	y	0.00	0	13.0	0	7;19	n	0.00	0	24.0	0	26;22	n	0.00	0	13.0	0	9;17	n	0.00	0	21.0	0	17;25	n	0.00	0	9.5	0	10;9	n	0.11	2	16.0	2	12;20	n	0.00	0	9.0	0	4;14	n	0.00	0	11.0	0	10;12	n	0.04	1	23.5	1	27;20	n	0.00	0	14.0	0	15;13	n	0.00	0	25.0	0	21;29	n	ENSMUSG00000000127.16	Fer	chr17	protein_coding	fer (fms/fps related) protein kinase
novel_NIR_8827	chr17	65889748	65894048	-	65889748	65894039	A5SS	ENSMUST00000232686.2	novel	0.55	6	5	6	5	y	0.64	9	5	9	5	y	1.00	2	0	2	0	y	0.60	3	2	3	2	y	0.50	4	4	4	4	y	0.33	1	2	1	2	n	1.00	7	0	7	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.40	4	6	4	6	y	0.50	6	6	6	6	y	ENSMUSG00000024091.10	Vapa	chr17	protein_coding	vesicle-associated membrane protein, associated protein A
novel_NIR_8828	chr17	65889772	65899286	-	65894161	65899286	A3SS&ES	ENSMUST00000232686.2	novel	0.17	1	5	1	5	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.07	1	13	1	13	n	0.22	2	7	2	7	y	0.00	0	9	0	9	n	0.25	1	3	1	3	n	0.20	2	8	2	8	y	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.18	2	9	2	9	y	ENSMUSG00000024091.10	Vapa	chr17	protein_coding	vesicle-associated membrane protein, associated protein A
novel_NIR_8829	chr17	66123045	66131443	+	66123045	66136370	A3SS	ENSMUST00000162109.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	ENSMUSG00000061950.18	Ppp4r1	chr17	protein_coding	protein phosphatase 4, regulatory subunit 1
novel_NIR_8830	chr17	66136542	66136864	+	66136542	66136866	A3SS	ENSMUST00000159646.8	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.50	1	1	1	1	n	1.00	2	0	2	0	y	0.75	6	2	6	2	y	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000061950.18	Ppp4r1	chr17	protein_coding	protein phosphatase 4, regulatory subunit 1
novel_NIR_8831	chr17	66233148	66233252	-	66230033	66233252	A3SS	ENSMUST00000233580.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	7	0	7	n	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	ENSMUSG00000024098.7	Twsg1	chr17	protein_coding	twisted gastrulation BMP signaling modulator 1
novel_NIR_8832	chr17	66233148	66233252	-	66233153	66233252	A3SS	ENSMUST00000233663.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.75	3	1	3	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	ENSMUSG00000024098.7	Twsg1	chr17	protein_coding	twisted gastrulation BMP signaling modulator 1
novel_NIR_8833	chr17	66294488	66317734	-	66294488	66331071	A5SS	ENSMUST00000038116.13	novel	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000034647.16	Ankrd12	chr17	protein_coding	ankyrin repeat domain 12
novel_NIR_8834	chr17	66338566	66339172	-	66338566	66344488	A5SS	ENSMUST00000038116.13	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000034647.16	Ankrd12	chr17	protein_coding	ankyrin repeat domain 12
novel_NIR_8835	chr17	66398924	66408414	-	66398924	66399653	A5SS&ES	ENSMUST00000147484.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000024099.16	Ndufv2	chr17	protein_coding	NADH:ubiquinone oxidoreductase core subunit V2
novel_NIR_8836	chr17	66398924	66408414	-	66398924	66407973	A5SS&ES	ENSMUST00000024909.15	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000024099.16	Ndufv2	chr17	protein_coding	NADH:ubiquinone oxidoreductase core subunit V2
novel_NIR_8837	chr17	66418890	66420858	+	66418644	66420858	A5SS	ENSMUST00000072383.14	novel	0.00	0	17	0	17	n	0.05	1	21	1	21	n	0.00	0	24	0	24	n	0.00	0	17	0	17	n	0.00	0	21	0	21	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.22	2	7	2	7	y	0.00	0	15	0	15	n	ENSMUSG00000024101.16	Washc1	chr17	protein_coding	WASH complex subunit 1
novel_NIR_8838	chr17	66418890	66420858	+	66418726	66420858	A5SS	ENSMUST00000116556.4	novel	0.00	0	4	0	4	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.00	0	1	0	1	n	0.00	0	17	0	17	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.25	2	6	2	6	y	0.00	0	6	0	6	n	ENSMUSG00000024101.16	Washc1	chr17	protein_coding	WASH complex subunit 1
novel_NIR_8839	chr17	66418890	66420858	+	66418896	66420858	A5SS	ENSMUST00000233354.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.40	2	3	2	3	y	-	-	-	-	-	-	ENSMUSG00000024101.16	Washc1	chr17	protein_coding	WASH complex subunit 1
novel_NIR_8840	chr17	66430836	66433168	+	66430687	66433168	A5SS	ENSMUST00000225956.2	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.50	2	2	2	2	y	0.20	2	8	2	8	y	0.20	1	4	1	4	n	0.75	6	2	6	2	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.33	1	2	1	2	n	0.70	7	3	7	3	y	ENSMUSG00000035842.11	Ddx11	chr17	protein_coding	DEAD/H box helicase 11
novel_NIR_8841	chr17	66450767	66451177	+	66450767	66451173	A3SS	ENSMUST00000163605.3	novel	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.22	2	7	2	7	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.00	0	20	0	20	n	ENSMUSG00000035842.11	Ddx11	chr17	protein_coding	DEAD/H box helicase 11
novel_NIR_8842	chr17	66867015	66897466	-	66867015	66900144	A5SS	ENSMUST00000024914.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024105.4	Themis3	chr17	protein_coding	thymocyte selection associated family member 3
novel_NIR_8843	chr17	6699320	6701519	+	6699320	6702407	A3SS	ENSMUST00000179569.3	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.25	3	9	3	9	y	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.14	1	6	1	6	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.11	1	8	1	8	n	ENSMUSG00000096255.3	Dynlt1b	chr17	protein_coding	dynein light chain Tctex-type 1B
novel_NIR_8844	chr17	67000921;67004698	67004648;67005361	-	67000921	67005361	cassetteExon	ENSMUST00000037974.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.11	0.5	4	1;0	4	n	-	-	-	-	-	-	0.75	3.0	1	4;2	1	y	0.20	0.5	2	0;1	2	n	0.00	0.0	2	0;0	2	n	0.00	0.0	1	0;0	1	n	-	-	-	-	-	-	0.00	0.0	1	0;0	1	n	0.00	0.0	1	0;0	1	n	-	-	-	-	-	-	ENSMUSG00000033278.11	Ptprm	chr17	protein_coding	protein tyrosine phosphatase, receptor type, M
novel_NIR_8845	chr17	6873343	6874011	+	6870927	6874011	A5SS	ENSMUST00000092966.5	novel	0.00	0	18	0	18	n	0.00	0	15	0	15	n	0.03	1	31	1	31	n	0.28	5	13	5	13	y	0.00	0	24	0	24	n	0.00	0	17	0	17	n	0.10	3	26	3	26	n	0.10	2	18	2	18	n	0.00	0	7	0	7	n	0.00	0	22	0	22	n	0.05	1	18	1	18	n	0.00	0	22	0	22	n	ENSMUSG00000000579.15	Dynlt1c	chr17	protein_coding	dynein light chain Tctex-type 1C
novel_NIR_8846	chr17	70731883	70733024	+	70731883	70822949	A3SS	ENSMUST00000133983.8	novel	1.00	1	0	1	0	n	1.00	4	0	4	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000003279.18	Dlgap1	chr17	protein_coding	DLG associated protein 1
novel_NIR_8847	chr17	70731883	70734933	+	70731883	70822949	A3SS	ENSMUST00000133983.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	2	0	2	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000003279.18	Dlgap1	chr17	protein_coding	DLG associated protein 1
novel_NIR_8848	chr17	70731883	70743254	+	70731883	70822949	A3SS	ENSMUST00000133983.8	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000003279.18	Dlgap1	chr17	protein_coding	DLG associated protein 1
novel_NIR_8849	chr17	71548721	71549629	+	71548721	71549039	A3SS&ES	ENSMUST00000154507.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	8	0	8	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	20	0	20	0	y	-	-	-	-	-	-	ENSMUSG00000024052.18	Lpin2	chr17	protein_coding	lipin 2
novel_NIR_8850	chr17	71897517	71900093	-	71897517	71904931	A5SS	ENSMUST00000130952.8	novel	0.00	0	23	0	23	n	0.18	2	9	2	9	y	0.06	1	16	1	16	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.00	0	24	0	24	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.12	1	7	1	7	n	0.06	1	16	1	16	n	ENSMUSG00000085492.8	Trmt61b	chr17	lncRNA	tRNA methyltransferase 61B
novel_NIR_8851	chr17	71897517	71905145	-	71897517	71904931	A5SS	ENSMUST00000130952.8	novel	0.26	8	23	8	23	y	0.47	8	9	8	9	y	0.36	9	16	9	16	y	0.40	4	6	4	6	y	0.46	12	14	12	14	y	0.19	4	17	4	17	y	0.14	4	24	4	24	n	0.08	1	11	1	11	n	0.50	6	6	6	6	y	0.62	8	5	8	5	y	0.42	5	7	5	7	y	0.41	11	16	11	16	y	ENSMUSG00000085492.8	Trmt61b	chr17	lncRNA	tRNA methyltransferase 61B
novel_NIR_8852	chr17	71920502	71922890	-	71920531	71922890	A3SS	ENSMUST00000234677.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000117637.2	Gm30091	chr17	lncRNA	predicted gene, 30091
novel_NIR_8853	chr17	7247010	7248507	+	7238121	7248507	A5SS	ENSMUST00000231963.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000094724.9	Rnaset2b	chr17	protein_coding	ribonuclease T2B
novel_NIR_8854	chr17	7247010	7248507	+	7245978	7248507	A5SS	ENSMUST00000232304.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000094724.9	Rnaset2b	chr17	protein_coding	ribonuclease T2B
novel_NIR_8855	chr17	7259193	7260469	+	7259193	7262028	A3SS	ENSMUST00000232304.2	novel	0.10	1	9	1	9	n	0.33	3	6	3	6	y	0.20	1	4	1	4	n	0.11	1	8	1	8	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	19	0	19	n	0.29	2	5	2	5	y	0.10	1	9	1	9	n	0.00	0	13	0	13	n	0.07	2	26	2	26	n	0.00	0	4	0	4	n	ENSMUSG00000094724.9	Rnaset2b	chr17	protein_coding	ribonuclease T2B
novel_NIR_8856	chr17	7259193	7263833	+	7259193	7262028	3pMXE	ENSMUST00000232106.2	novel	0.31	4	9	4	9	y	0.00	0	6	0	6	n	0.20	1	4	1	4	n	0.20	2	8	2	8	y	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.10	2	19	2	19	n	0.00	0	5	0	5	n	0.10	1	9	1	9	n	0.00	0	13	0	13	n	0.04	1	26	1	26	n	0.00	0	4	0	4	n	ENSMUSG00000094724.9	Rnaset2b	chr17	protein_coding	ribonuclease T2B
novel_NIR_8857	chr17	7259193	7263833	+	7259193;7262073	7262028;7263833	ES	ENSMUST00000232304.2	novel	0.26	4	11.5	4	9;14	y	0.00	0	8.5	0	6;11	n	0.20	1	4.0	1	4;4	n	0.20	2	8.0	2	8;8	y	0.00	0	12.5	0	8;17	n	0.00	0	9.5	0	8;11	n	0.10	2	19.0	2	19;19	n	0.00	0	6.0	0	5;7	n	0.08	1	12.0	1	9;15	n	0.00	0	12.5	0	13;12	n	0.04	1	24.5	1	26;23	n	0.00	0	9.0	0	4;14	n	ENSMUSG00000094724.9	Rnaset2b	chr17	protein_coding	ribonuclease T2B
novel_NIR_8858	chr17	7263399	7263833	+	7262073	7263833	A5SS	ENSMUST00000232304.2	novel	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	17	0	17	n	0.00	0	11	0	11	n	0.00	0	19	0	19	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.25	4	12	4	12	y	0.04	1	23	1	23	n	0.12	2	14	2	14	n	ENSMUSG00000094724.9	Rnaset2b	chr17	protein_coding	ribonuclease T2B
novel_NIR_8859	chr17	7263495	7263833	+	7262073	7263833	A5SS	ENSMUST00000232304.2	novel	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.06	1	17	1	17	n	0.15	2	11	2	11	y	0.00	0	19	0	19	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.08	1	12	1	12	n	0.08	2	23	2	23	n	0.00	0	14	0	14	n	ENSMUSG00000094724.9	Rnaset2b	chr17	protein_coding	ribonuclease T2B
novel_NIR_8860	chr17	7265532	7265645	+	7265532	7277157	A3SS	ENSMUST00000179728.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	3	0	3	0	y	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.29	2	5	2	5	y	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.38	3	5	3	5	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000094724.9	Rnaset2b	chr17	protein_coding	ribonuclease T2B
novel_NIR_8861	chr17	7265532	7265645	+	7265532	7286673	A3SS	ENSMUST00000231550.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000116876.2	Gm49721	chr17	protein_coding	predicted gene, 49721
novel_NIR_8862	chr17	73143786	73146711	+	73145489	73146711	5pMXE	ENSMUST00000233221.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000039770.7	Ypel5	chr17	protein_coding	yippee like 5
novel_NIR_8863	chr17	73144703	73146711	+	73145489	73146711	5pMXE	ENSMUST00000233221.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000039770.7	Ypel5	chr17	protein_coding	yippee like 5
novel_NIR_8864	chr17	73144814	73146711	+	73144814	73153274	A3SS	ENSMUST00000233886.2	novel	0.17	2	10	2	10	y	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	17	0	17	n	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	23	0	23	n	0.00	0	10	0	10	n	0.12	1	7	1	7	n	ENSMUSG00000039770.7	Ypel5	chr17	protein_coding	yippee like 5
novel_NIR_8865	chr17	73144814	73146711	+	73145489	73146711	5pMXE	ENSMUST00000233221.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000039770.7	Ypel5	chr17	protein_coding	yippee like 5
novel_NIR_8866	chr17	73472172	73476491	+	73470055	73476491	A5SS	ENSMUST00000131335.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000054469.15	Lclat1	chr17	protein_coding	lysocardiolipin acyltransferase 1
novel_NIR_8867	chr17	7406029	7495312	+	7437842	7495312	5pMXE	ENSMUST00000024575.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.80	4	1	4	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023809.11	Rps6ka2	chr17	protein_coding	ribosomal protein S6 kinase, polypeptide 2
novel_NIR_8868	chr17	74193514	74193844	-	74193514	74193609	5pMXE	ENSMUST00000232717.2	novel	-	-	-	-	-	-	1.00	9	0	9	0	y	1.00	16	0	16	0	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.85	17	3	17	3	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	0.00	0	1	0	1	n	ENSMUSG00000024066.10	Xdh	chr17	protein_coding	xanthine dehydrogenase
novel_NIR_8869	chr17	74193514	74193844	-	74193514	74194881	A5SS	ENSMUST00000233162.2	novel	0.00	0	17	0	17	n	0.35	9	17	9	17	y	0.50	16	16	16	16	n	0.00	0	19	0	19	n	0.02	1	42	1	42	n	0.00	0	17	0	17	n	0.00	0	22	0	22	n	0.00	0	13	0	13	n	0.45	17	21	17	21	y	0.09	2	21	2	21	n	0.07	2	25	2	25	n	0.00	0	21	0	21	n	ENSMUSG00000024066.10	Xdh	chr17	protein_coding	xanthine dehydrogenase
novel_NIR_8870	chr17	74193514	74196538	-	74193514	74193609	5pMXE	ENSMUST00000232717.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000024066.10	Xdh	chr17	protein_coding	xanthine dehydrogenase
novel_NIR_8871	chr17	74193514;74193969	74193844;74194881	-	74193514	74194881	cassetteExon	ENSMUST00000233162.2	novel	0.00	0.0	17	0;0	17	n	0.21	4.5	17	9;0	17	n	0.38	10.0	16	16;4	16	y	0.00	0.0	19	0;0	19	n	0.01	0.5	42	1;0	42	n	0.00	0.0	17	0;0	17	n	0.00	0.0	22	0;0	22	n	0.00	0.0	13	0;0	13	n	0.29	8.5	21	17;0	21	n	0.05	1.0	21	2;0	21	n	0.04	1.0	25	2;0	25	n	0.00	0.0	21	0;0	21	n	ENSMUSG00000024066.10	Xdh	chr17	protein_coding	xanthine dehydrogenase
novel_NIR_8872	chr17	74196402	74198106	-	74196405	74198106	A3SS	ENSMUST00000233352.2	novel	0.16	6	31	6	31	y	0.00	0	20	0	20	n	0.29	5	12	5	12	y	0.20	6	24	6	24	y	0.09	3	30	3	30	n	0.00	0	7	0	7	n	0.09	4	40	4	40	n	0.04	1	27	1	27	n	0.23	9	31	9	31	y	0.12	5	36	5	36	n	0.07	3	40	3	40	n	0.00	0	34	0	34	n	ENSMUSG00000024066.10	Xdh	chr17	protein_coding	xanthine dehydrogenase
novel_NIR_8873	chr17	74241858	74242865	-	74241858	74250814	A5SS	ENSMUST00000233621.2	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000024066.10	Xdh	chr17	protein_coding	xanthine dehydrogenase
novel_NIR_8874	chr17	74334136	74339932	-	74334136	74354542	A5SS	ENSMUST00000043458.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000038541.9	Srd5a2	chr17	protein_coding	steroid 5 alpha-reductase 2
novel_NIR_8875	chr17	74334136	74339932	-	74334136	74375396	A5SS	ENSMUST00000232749.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.50	1	1	1	1	n	0.33	1	2	1	2	n	ENSMUSG00000117038.2	Gm49880	chr17	lncRNA	predicted gene, 49880
novel_NIR_8876	chr17	74334136	74375440	-	74334136	74354542	5pMXE	ENSMUST00000043458.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038541.9	Srd5a2	chr17	protein_coding	steroid 5 alpha-reductase 2
novel_NIR_8877	chr17	74334136	74375440	-	74334136	74375396	A5SS	ENSMUST00000232749.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.43	3	4	3	4	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000117038.2	Gm49880	chr17	lncRNA	predicted gene, 49880
novel_NIR_8878	chr17	74334136	74375440	-	74374640	74375440	3pMXE	ENSMUST00000233374.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000117226.2	Gm31084	chr17	lncRNA	predicted gene, 31084
novel_NIR_8879	chr17	74334136	74380738	-	74334136	74354542	5pMXE	ENSMUST00000043458.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000038541.9	Srd5a2	chr17	protein_coding	steroid 5 alpha-reductase 2
novel_NIR_8880	chr17	74334136	74380738	-	74334136;74375499	74375396;74380738	ES	ENSMUST00000232749.2	novel	0.00	0	5.5	0	1;10	n	0.00	0	4.5	0	1;8	n	0.14	1	6.0	1	1;11	n	0.10	1	9.0	1	5;13	n	0.40	6	9.0	6	1;17	y	0.18	1	4.5	1	3;6	n	0.25	1	3.0	1	2;4	n	0.35	3	5.5	3	2;9	y	0.00	0	5.5	0	2;9	n	0.14	2	12.0	2	4;20	n	0.00	0	6.5	0	1;12	n	0.09	1	10.5	1	2;19	n	ENSMUSG00000117038.2	Gm49880	chr17	lncRNA	predicted gene, 49880
novel_NIR_8881	chr17	74334136	74380749	-	74334136	74354542	5pMXE	ENSMUST00000043458.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038541.9	Srd5a2	chr17	protein_coding	steroid 5 alpha-reductase 2
novel_NIR_8882	chr17	74334136	74380749	-	74334136	74375396	A5SS&ES	ENSMUST00000232749.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.75	3	1	3	1	y	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000117038.2	Gm49880	chr17	lncRNA	predicted gene, 49880
novel_NIR_8883	chr17	74363415	74375440	-	74363415	74375396	A5SS	ENSMUST00000233429.2	novel	0.50	3	3	3	3	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.12	1	7	1	7	n	0.00	0	8	0	8	n	0.25	1	3	1	3	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.10	1	9	1	9	n	0.00	0	4	0	4	n	0.11	1	8	1	8	n	0.00	0	7	0	7	n	ENSMUSG00000117226.2	Gm31084	chr17	lncRNA	predicted gene, 31084
novel_NIR_8884	chr17	74363415	74375440	-	74374640	74375440	3pMXE	ENSMUST00000233374.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000117226.2	Gm31084	chr17	lncRNA	predicted gene, 31084
novel_NIR_8885	chr17	74363415	74380738	-	74363415;74375499	74375396;74380738	ES	ENSMUST00000233429.2	novel	0.00	0	6.5	0	3;10	n	0.13	1	6.5	1	5;8	n	0.27	2	5.5	2	0;11	y	0.17	2	10.0	2	7;13	y	0.00	0	12.5	0	8;17	n	0.18	1	4.5	1	3;6	n	0.00	0	7.0	0	10;4	n	0.00	0	6.5	0	4;9	n	0.00	0	9.0	0	9;9	n	0.08	1	12.0	1	4;20	n	0.00	0	10.0	0	8;12	n	0.13	2	13.0	2	7;19	n	ENSMUSG00000117226.2	Gm31084	chr17	lncRNA	predicted gene, 31084
novel_NIR_8886	chr17	74363415	74380738	-	74375499	74380738	A3SS&ES	ENSMUST00000232749.2	novel	0.00	0	10	0	10	n	0.11	1	8	1	8	n	0.15	2	11	2	11	y	0.13	2	13	2	13	n	0.00	0	17	0	17	n	0.14	1	6	1	6	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.05	1	20	1	20	n	0.00	0	12	0	12	n	0.10	2	19	2	19	n	ENSMUSG00000117038.2	Gm49880	chr17	lncRNA	predicted gene, 49880
novel_NIR_8887	chr17	74375499	74380749	-	74375499	74380738	A5SS	ENSMUST00000232749.2	novel	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.07	1	13	1	13	n	0.11	2	17	2	17	n	0.25	2	6	2	6	y	0.00	0	4	0	4	n	0.10	1	9	1	9	n	0.10	1	9	1	9	n	0.00	0	20	0	20	n	0.00	0	12	0	12	n	0.00	0	19	0	19	n	ENSMUSG00000117038.2	Gm49880	chr17	lncRNA	predicted gene, 49880
novel_NIR_8888	chr17	74380937	74382180	-	74380937	74385758	A5SS	ENSMUST00000233374.2	novel	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	ENSMUSG00000117226.2	Gm31084	chr17	lncRNA	predicted gene, 31084
novel_NIR_8889	chr17	74380937	74385922	-	74380937	74385758	A5SS	ENSMUST00000233374.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.29	2	5	2	5	y	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.36	5	9	5	9	y	ENSMUSG00000117226.2	Gm31084	chr17	lncRNA	predicted gene, 31084
novel_NIR_8890	chr17	74386944	74387042	-	74385942	74387042	A3SS	ENSMUST00000233356.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000117226.2	Gm31084	chr17	lncRNA	predicted gene, 31084
novel_NIR_8891	chr17	74524098	74548900	-	74509360	74548900	A3SS	ENSMUST00000233176.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000058704.10	Memo1	chr17	protein_coding	mediator of cell motility 1
novel_NIR_8892	chr17	74533646	74548900	-	74509360	74548900	A3SS	ENSMUST00000233176.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.83	5	1	5	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000058704.10	Memo1	chr17	protein_coding	mediator of cell motility 1
novel_NIR_8893	chr17	74606819	74607325	-	74606819	74622897	A5SS	ENSMUST00000233187.2	novel	0.00	0	2	0	2	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000024067.15	Dpy30	chr17	protein_coding	dpy-30, histone methyltransferase complex regulatory subunit
novel_NIR_8894	chr17	74614850	74622897	-	74606819	74622897	A3SS	ENSMUST00000233187.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024067.15	Dpy30	chr17	protein_coding	dpy-30, histone methyltransferase complex regulatory subunit
novel_NIR_8895	chr17	74621995	74622897	-	74606819	74622897	A3SS	ENSMUST00000233187.2	novel	0.60	3	2	3	2	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024067.15	Dpy30	chr17	protein_coding	dpy-30, histone methyltransferase complex regulatory subunit
novel_NIR_8896	chr17	74663164	74663655	+	74663164	74666249	A3SS	ENSMUST00000224711.2	novel	0.00	0	49	0	49	n	0.00	0	26	0	26	n	0.00	0	58	0	58	n	0.00	0	72	0	72	n	0.00	0	75	0	75	n	0.20	4	16	4	16	y	0.00	0	47	0	47	n	0.02	1	40	1	40	n	0.00	0	40	0	40	n	0.00	0	66	0	66	n	0.00	0	35	0	35	n	0.00	0	64	0	64	n	ENSMUSG00000024068.9	Spast	chr17	protein_coding	spastin
novel_NIR_8897	chr17	74663164	74663655	+	74663164	74674243	A3SS	ENSMUST00000233611.2	novel	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	16	0	16	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.57	4	3	4	3	y	0.00	0	10	0	10	n	0.14	1	6	1	6	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	ENSMUSG00000024068.9	Spast	chr17	protein_coding	spastin
novel_NIR_8898	chr17	74796789	74800923	+	74796789	74799322	3pMXE	ENSMUST00000234939.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	ENSMUSG00000024072.10	Yipf4	chr17	protein_coding	Yip1 domain family, member 4
novel_NIR_8899	chr17	74915180	74916054	+	74915279	74916054	A5SS	ENSMUST00000180037.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.14	1	6	1	6	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.40	4	6	4	6	y	0.00	0	4	0	4	n	ENSMUSG00000024073.17	Birc6	chr17	protein_coding	baculoviral IAP repeat-containing 6
novel_NIR_8900	chr17	75046757	75047406	+	75046757	75049913	A3SS	ENSMUST00000024882.8	novel	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.00	0	19	0	19	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.15	2	11	2	11	y	0.10	1	9	1	9	n	ENSMUSG00000024078.8	Ttc27	chr17	protein_coding	tetratricopeptide repeat domain 27
novel_NIR_8901	chr17	7647026	7650442	-	7647026	7652681	A5SS	ENSMUST00000070059.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000056133.6	Unc93a2	chr17	protein_coding	unc-93 homolog A2
novel_NIR_8902	chr17	7647026	7650442	-	7647026	7652691	A5SS	ENSMUST00000231922.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000056133.6	Unc93a2	chr17	protein_coding	unc-93 homolog A2
novel_NIR_8903	chr17	7647026	7651169	-	7647026	7652681	A5SS	ENSMUST00000070059.5	novel	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	8	0	8	0	y	1.00	1	0	1	0	n	1.00	7	0	7	0	y	1.00	5	0	5	0	y	1.00	4	0	4	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	6	0	6	0	y	ENSMUSG00000056133.6	Unc93a2	chr17	protein_coding	unc-93 homolog A2
novel_NIR_8904	chr17	7647026	7651169	-	7647026	7652691	A5SS	ENSMUST00000231922.2	novel	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	8	0	8	0	y	1.00	1	0	1	0	n	1.00	7	0	7	0	y	1.00	5	0	5	0	y	1.00	4	0	4	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	6	0	6	0	y	ENSMUSG00000056133.6	Unc93a2	chr17	protein_coding	unc-93 homolog A2
novel_NIR_8905	chr17	7647026	7651173	-	7647026	7652681	A5SS	ENSMUST00000070059.5	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	13	0	13	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	6	0	6	0	y	ENSMUSG00000056133.6	Unc93a2	chr17	protein_coding	unc-93 homolog A2
novel_NIR_8906	chr17	7647026	7651173	-	7647026	7652691	A5SS	ENSMUST00000231922.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	13	0	13	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	6	0	6	0	y	ENSMUSG00000056133.6	Unc93a2	chr17	protein_coding	unc-93 homolog A2
novel_NIR_8907	chr17	7647026	7655107	-	7647026	7652681	5pMXE	ENSMUST00000070059.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000056133.6	Unc93a2	chr17	protein_coding	unc-93 homolog A2
novel_NIR_8908	chr17	7647026	7655107	-	7647026	7652691	5pMXE	ENSMUST00000231922.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000056133.6	Unc93a2	chr17	protein_coding	unc-93 homolog A2
novel_NIR_8909	chr17	79279511	79279832	-	79278912	79279832	A3SS	ENSMUST00000003191.14	novel	0.21	15	58	15	58	y	0.10	6	56	6	56	n	0.06	3	46	3	46	n	0.10	9	82	9	82	n	0.16	23	118	23	118	y	0.12	4	28	4	28	n	0.20	16	66	16	66	y	0.05	4	73	4	73	n	0.13	11	72	11	72	n	0.16	23	117	23	117	y	0.16	12	61	12	61	y	0.20	25	97	25	97	y	ENSMUSG00000024070.16	Prkd3	chr17	protein_coding	protein kinase D3
novel_NIR_8910	chr17	79292782	79292986	-	79292782	79315689	A5SS	ENSMUST00000118768.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	ENSMUSG00000024070.16	Prkd3	chr17	protein_coding	protein kinase D3
novel_NIR_8911	chr17	79292782	79336717	-	79292782	79315689	5pMXE	ENSMUST00000118768.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000024070.16	Prkd3	chr17	protein_coding	protein kinase D3
novel_NIR_8912	chr17	79292782	79336717	-	79292782	79320053	5pMXE	ENSMUST00000003191.14	novel	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	27	0	27	n	0.00	0	11	0	11	n	0.00	0	23	0	23	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.20	3	12	3	12	y	0.00	0	25	0	25	n	ENSMUSG00000024070.16	Prkd3	chr17	protein_coding	protein kinase D3
novel_NIR_8913	chr17	79320970	79335525	-	79320970	79328114	5pMXE	ENSMUST00000168887.8	novel	0.00	0	6	0	6	n	0.33	2	4	2	4	y	0.00	0	15	0	15	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.20	1	4	1	4	n	ENSMUSG00000024070.16	Prkd3	chr17	protein_coding	protein kinase D3
novel_NIR_8914	chr17	79921542;79922328	79922205;79928735	+	79921542	79928735	cassetteExon	ENSMUST00000224014.2	novel	0.00	0.0	3	0;0	3	n	1.00	1.5	0	0;3	0	n	0.00	0.0	1	0;0	1	n	-	-	-	-	-	-	0.00	0.0	2	0;0	2	n	1.00	2.0	0	2;2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0.0	2	0;0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036368.9	Rmdn2	chr17	protein_coding	regulator of microtubule dynamics 2
novel_NIR_8915	chr17	79922328	79928735	+	79919390	79928735	A5SS	ENSMUST00000223924.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036368.9	Rmdn2	chr17	protein_coding	regulator of microtubule dynamics 2
novel_NIR_8916	chr17	79922328	79928735	+	79921542	79928735	A5SS	ENSMUST00000224014.2	novel	0.00	0	3	0	3	n	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036368.9	Rmdn2	chr17	protein_coding	regulator of microtubule dynamics 2
novel_NIR_8917	chr17	79922328	79928735	+	79922416	79928735	A5SS&ES	ENSMUST00000040368.3	novel	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000036368.9	Rmdn2	chr17	protein_coding	regulator of microtubule dynamics 2
novel_NIR_8918	chr17	79929201	79930514	+	79929201	79934891	A3SS	ENSMUST00000086570.3	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.60	3	2	3	2	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.25	2	6	2	6	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000036368.9	Rmdn2	chr17	protein_coding	regulator of microtubule dynamics 2
novel_NIR_8919	chr17	79929201	79935521	+	79929201	79934891	A3SS	ENSMUST00000086570.3	novel	1.00	8	0	8	0	y	1.00	4	0	4	0	y	0.50	1	1	1	1	n	1.00	4	0	4	0	y	1.00	5	0	5	0	y	0.50	2	2	2	2	y	1.00	5	0	5	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	0.45	5	6	5	6	y	1.00	6	0	6	0	y	1.00	8	0	8	0	y	ENSMUSG00000036368.9	Rmdn2	chr17	protein_coding	regulator of microtubule dynamics 2
novel_NIR_8920	chr17	79930853	79934891	+	79929201	79934891	A5SS	ENSMUST00000086570.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036368.9	Rmdn2	chr17	protein_coding	regulator of microtubule dynamics 2
novel_NIR_8921	chr17	79930853	79934891	+	79934231	79934891	5pMXE	ENSMUST00000223555.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036368.9	Rmdn2	chr17	protein_coding	regulator of microtubule dynamics 2
novel_NIR_8922	chr17	80158222	80159954	-	80158222	80158316	A5SS	ENSMUST00000221286.2	novel	1.00	14	0	14	0	y	1.00	5	0	5	0	y	1.00	3	0	3	0	y	0.78	7	2	7	2	y	0.67	4	2	4	2	y	1.00	2	0	2	0	y	1.00	12	0	12	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000059811.14	Atl2	chr17	protein_coding	atlastin GTPase 2
novel_NIR_8923	chr17	80158222	80159954	-	80158222;80158330	80158316;80159954	ES	ENSMUST00000222193.2	novel	1.00	14	0.0	14	0;0	y	1.00	5	0.0	5	0;0	y	1.00	3	0.0	3	0;0	y	0.88	7	1.0	7	2;0	y	0.80	4	1.0	4	2;0	y	1.00	2	0.0	2	0;0	y	1.00	12	0.0	12	0;0	y	1.00	2	0.0	2	0;0	y	1.00	1	0.0	1	0;0	n	1.00	3	0.0	3	0;0	y	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	ENSMUSG00000059811.14	Atl2	chr17	protein_coding	atlastin GTPase 2
novel_NIR_8924	chr17	80158222	80159954	-	80159218	80159954	A3SS&ES	ENSMUST00000222415.2	novel	1.00	14	0	14	0	y	0.83	5	1	5	1	y	1.00	3	0	3	0	y	1.00	7	0	7	0	y	1.00	4	0	4	0	y	0.50	2	2	2	2	y	1.00	12	0	12	0	y	1.00	2	0	2	0	y	0.50	1	1	1	1	n	1.00	3	0	3	0	y	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000059811.14	Atl2	chr17	protein_coding	atlastin GTPase 2
novel_NIR_8925	chr17	80195145	80203338	-	80172605	80203338	A3SS	ENSMUST00000112437.8	novel	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.62	5	3	5	3	y	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	8	0	8	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000059811.14	Atl2	chr17	protein_coding	atlastin GTPase 2
novel_NIR_8926	chr17	80511786	80512691	-	80512510	80512691	A3SS&ES	ENSMUST00000234503.2	novel	0.18	2	9	2	9	y	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	20	0	20	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	ENSMUSG00000024097.12	Srsf7	chr17	protein_coding	serine and arginine-rich splicing factor 7
novel_NIR_8927	chr17	80511816	80512404	-	80511816	80512051	A5SS	ENSMUST00000234503.2	novel	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.25	3	9	3	9	y	0.00	0	2	0	2	n	0.40	4	6	4	6	y	0.20	1	4	1	4	n	0.09	1	10	1	10	n	0.00	0	1	0	1	n	0.33	2	4	2	4	y	0.36	4	7	4	7	y	0.00	0	8	0	8	n	0.38	6	10	6	10	y	ENSMUSG00000024097.12	Srsf7	chr17	protein_coding	serine and arginine-rich splicing factor 7
novel_NIR_8928	chr17	80532103	80533050	+	80532099	80533050	A5SS	ENSMUST00000156869.2	novel	0.12	2	15	2	15	n	0.20	3	12	3	12	y	0.00	0	30	0	30	n	0.00	0	10	0	10	n	0.14	4	24	4	24	n	0.00	0	9	0	9	n	0.48	16	17	16	17	y	0.00	0	17	0	17	n	0.33	4	8	4	8	y	0.26	10	28	10	28	y	0.15	3	17	3	17	y	0.19	5	21	5	21	y	ENSMUSG00000055760.13	Gemin6	chr17	protein_coding	gem nuclear organelle associated protein 6
novel_NIR_8929	chr17	80546359	80548045	-	80546359	80549381	A5SS	ENSMUST00000038166.9	novel	0.00	0	24	0	24	n	0.00	0	28	0	28	n	0.00	0	33	0	33	n	0.00	0	17	0	17	n	0.00	0	27	0	27	n	0.00	0	20	0	20	n	0.00	0	22	0	22	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.19	3	13	3	13	y	0.00	0	27	0	27	n	ENSMUSG00000035051.16	Dhx57	chr17	protein_coding	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57
novel_NIR_8930	chr17	80571431	80572350	-	80571431	80572505	A5SS	ENSMUST00000038166.9	novel	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.29	4	10	4	10	y	0.06	1	15	1	15	n	0.00	0	14	0	14	n	0.00	0	3	0	3	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	ENSMUSG00000035051.16	Dhx57	chr17	protein_coding	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57
novel_NIR_8931	chr17	80580539	80582549	-	80580539	80582193	A5SS	ENSMUST00000038166.9	novel	0.00	0	7	0	7	n	0.22	2	7	2	7	y	0.00	0	13	0	13	n	0.00	0	18	0	18	n	0.05	1	18	1	18	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.08	1	11	1	11	n	ENSMUSG00000035051.16	Dhx57	chr17	protein_coding	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57
novel_NIR_8932	chr17	80583464	80585671	-	80583464	80585652	A5SS	ENSMUST00000086555.11	novel	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.15	2	11	2	11	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.20	1	4	1	4	n	0.00	0	6	0	6	n	ENSMUSG00000035051.16	Dhx57	chr17	protein_coding	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57
novel_NIR_8933	chr17	80583464	80585671	-	80583464	80588625	A5SS	ENSMUST00000038166.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000035051.16	Dhx57	chr17	protein_coding	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57
novel_NIR_8934	chr17	80742448	80752859	-	80742451	80752859	A3SS	ENSMUST00000068714.7	novel	0.00	0	19	0	19	n	0.00	0	8	0	8	n	0.16	4	21	4	21	y	0.00	0	28	0	28	n	0.00	0	43	0	43	n	0.04	1	22	1	22	n	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.08	1	11	1	11	n	0.21	5	19	5	19	y	0.00	0	14	0	14	n	0.00	0	25	0	25	n	ENSMUSG00000024241.8	Sos1	chr17	protein_coding	SOS Ras/Rac guanine nucleotide exchange factor 1
novel_NIR_8935	chr17	80860957	80863756	+	80860957	80870255	A3SS	ENSMUST00000234757.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000117375.2	Gm33373	chr17	lncRNA	predicted gene, 33373
novel_NIR_8936	chr17	80870324	80871163	+	80870324	80871081	A3SS	ENSMUST00000234757.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000117375.2	Gm33373	chr17	lncRNA	predicted gene, 33373
novel_NIR_8937	chr17	80900588	80902285	-	80900588	80900713	A5SS&ES	ENSMUST00000112389.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000024242.16	Map4k3	chr17	protein_coding	mitogen-activated protein kinase kinase kinase kinase 3
novel_NIR_8938	chr17	80963035	80963286	-	80961896	80963286	A3SS	ENSMUST00000112389.9	novel	0.20	2	8	2	8	y	0.00	0	13	0	13	n	0.00	0	54	0	54	n	0.00	0	25	0	25	n	0.00	0	27	0	27	n	0.00	0	14	0	14	n	0.00	0	30	0	30	n	0.00	0	31	0	31	n	0.00	0	21	0	21	n	0.00	0	25	0	25	n	0.00	0	18	0	18	n	0.06	2	30	2	30	n	ENSMUSG00000024242.16	Map4k3	chr17	protein_coding	mitogen-activated protein kinase kinase kinase kinase 3
novel_NIR_8939	chr17	80963350	80988297	-	80963350;80971511	80971421;80988297	ES	ENSMUST00000112389.9	novel	0.25	4	12.0	4	12;12	y	0.00	0	14.5	0	17;12	n	0.11	5	39.5	5	51;28	n	0.00	0	33.5	0	33;34	n	0.00	0	24.5	0	26;23	n	0.00	0	17.0	0	14;20	n	0.09	2	19.5	2	22;17	n	0.09	2	20.5	2	24;17	n	0.00	0	14.0	0	16;12	n	0.12	3	21.0	3	22;20	n	0.00	0	20.5	0	23;18	n	0.00	0	30.0	0	41;19	n	ENSMUSG00000024242.16	Map4k3	chr17	protein_coding	mitogen-activated protein kinase kinase kinase kinase 3
novel_NIR_8940	chr17	80988354	81038255	-	80988354	81035223	5pMXE	ENSMUST00000112389.9	novel	0.20	2	8	2	8	y	0.00	0	7	0	7	n	0.00	0	24	0	24	n	0.00	0	20	0	20	n	0.00	0	19	0	19	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	18	0	18	n	0.00	0	16	0	16	n	0.00	0	15	0	15	n	ENSMUSG00000024242.16	Map4k3	chr17	protein_coding	mitogen-activated protein kinase kinase kinase kinase 3
novel_NIR_8941	chr17	80988354	81040946	-	80988354	81035223	5pMXE	ENSMUST00000112389.9	novel	0.27	3	8	3	8	y	0.00	0	7	0	7	n	0.33	12	24	12	24	y	0.09	2	20	2	20	n	0.05	1	19	1	19	n	0.41	7	10	7	10	y	0.12	2	14	2	14	n	0.25	3	9	3	9	y	0.00	0	9	0	9	n	0.00	0	18	0	18	n	0.00	0	16	0	16	n	0.00	0	15	0	15	n	ENSMUSG00000024242.16	Map4k3	chr17	protein_coding	mitogen-activated protein kinase kinase kinase kinase 3
novel_NIR_8942	chr17	81345041	81345522	-	81345041	81345534	A5SS	ENSMUST00000025093.6	novel	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.67	4	2	4	2	y	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.09	1	10	1	10	n	ENSMUSG00000024246.10	Thumpd2	chr17	protein_coding	THUMP domain containing 2
novel_NIR_8943	chr17	81345605	81347861	-	81345605	81351529	A5SS	ENSMUST00000025093.6	novel	0.75	3	1	3	1	y	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.45	5	6	5	6	y	0.17	1	5	1	5	n	0.00	0	7	0	7	n	ENSMUSG00000024246.10	Thumpd2	chr17	protein_coding	THUMP domain containing 2
novel_NIR_8944	chr17	81347974	81351529	-	81345605	81351529	A3SS	ENSMUST00000025093.6	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.10	1	9	1	9	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.29	2	5	2	5	n	0.22	2	7	2	7	y	ENSMUSG00000024246.10	Thumpd2	chr17	protein_coding	THUMP domain containing 2
novel_NIR_8945	chr17	81371469	81372364	-	81363339	81372364	A3SS	ENSMUST00000025093.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.22	2	7	2	7	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	7	0	7	n	ENSMUSG00000024246.10	Thumpd2	chr17	protein_coding	THUMP domain containing 2
novel_NIR_8946	chr17	8171468	8179087	+	8171468	8173425	3pMXE	ENSMUST00000231845.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000073471.4	Rsph3a	chr17	protein_coding	radial spoke 3A homolog (Chlamydomonas)
novel_NIR_8947	chr17	8171468	8179087	+	8171468	8188979	A3SS	ENSMUST00000097423.3	novel	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.23	3	10	3	10	y	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	ENSMUSG00000073471.4	Rsph3a	chr17	protein_coding	radial spoke 3A homolog (Chlamydomonas)
novel_NIR_8948	chr17	81752401	81955238	-	81753022	81955238	A3SS&ES	ENSMUST00000234131.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000054640.16	Slc8a1	chr17	protein_coding	solute carrier family 8 (sodium/calcium exchanger), member 1
novel_NIR_8949	chr17	8349131	8349562	-	8349131	8350875	A5SS	ENSMUST00000232307.2	novel	0.00	0	23	0	23	n	0.07	2	25	2	25	n	0.00	0	16	0	16	n	0.22	4	14	4	14	y	0.00	0	28	0	28	n	0.00	0	12	0	12	n	0.03	1	28	1	28	n	0.00	0	10	0	10	n	0.07	2	25	2	25	n	0.08	3	35	3	35	n	0.06	2	32	2	32	n	0.08	3	36	3	36	n	ENSMUSG00000116988.2	Gm49673	chr17	protein_coding	predicted gene, 49673
novel_NIR_8950	chr17	83527585	83528362	+	83527585	83528482	A3SS	ENSMUST00000170758.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000024247.15	Pkdcc	chr17	protein_coding	protein kinase domain containing, cytoplasmic
novel_NIR_8951	chr17	83741350	83747460	+	83735454	83747460	A5SS	ENSMUST00000049503.10	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000032624.17	Eml4	chr17	protein_coding	echinoderm microtubule associated protein like 4
novel_NIR_8952	chr17	83741350	83747460	+	83735677	83747460	A5SS	ENSMUST00000096766.12	novel	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	17	0	17	n	0.25	2	6	2	6	y	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.11	2	16	2	16	n	ENSMUSG00000032624.17	Eml4	chr17	protein_coding	echinoderm microtubule associated protein like 4
novel_NIR_8953	chr17	83810163	83811529	-	83811428	83811529	A3SS&ES	ENSMUST00000167741.9	novel	0.00	0	44	0	44	n	0.34	14	27	14	27	y	0.44	19	24	19	24	y	0.18	10	45	10	45	y	0.03	1	38	1	38	n	0.00	0	16	0	16	n	0.35	22	40	22	40	y	0.50	18	18	18	18	y	0.00	0	28	0	28	n	0.22	12	43	12	43	y	0.36	17	30	17	30	y	0.35	22	40	22	40	y	ENSMUSG00000024248.15	Cox7a2l	chr17	protein_coding	cytochrome c oxidase subunit 7A2 like
novel_NIR_8954	chr17	83811657	83821425	-	83811657	83824705	A5SS	ENSMUST00000234258.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024248.15	Cox7a2l	chr17	protein_coding	cytochrome c oxidase subunit 7A2 like
novel_NIR_8955	chr17	83811657	83821982	-	83811657	83824705	A5SS	ENSMUST00000234258.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000024248.15	Cox7a2l	chr17	protein_coding	cytochrome c oxidase subunit 7A2 like
novel_NIR_8956	chr17	8391840	8401063	+	8391840	8394351	A3SS&ES	ENSMUST00000097419.10	novel	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.36	4	7	4	7	y	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.38	3	5	3	5	y	0.50	2	2	2	2	y	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000069135.12	Cep43	chr17	protein_coding	centrosomal protein 43
novel_NIR_8957	chr17	8394410	8401063	+	8394410	8401060	A3SS	ENSMUST00000097419.10	novel	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	5	0	5	n	0.67	2	1	2	1	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000069135.12	Cep43	chr17	protein_coding	centrosomal protein 43
novel_NIR_8958	chr17	84139824	84141710	-	84139824	84150625	A5SS	ENSMUST00000234214.2	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.25	2	6	2	6	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.00	0	8	0	8	n	0.11	1	8	1	8	n	0.00	0	11	0	11	n	0.20	1	4	1	4	n	ENSMUSG00000000673.10	Haao	chr17	protein_coding	3-hydroxyanthranilate 3,4-dioxygenase
novel_NIR_8959	chr17	84139824	84142620	-	84139824	84150625	A5SS	ENSMUST00000234214.2	novel	0.98	138	3	138	3	y	0.98	158	3	158	3	y	0.98	85	2	85	2	y	0.95	125	6	125	6	y	0.98	155	3	155	3	y	1.00	63	0	63	0	y	0.98	186	4	186	4	y	0.97	69	2	69	2	y	0.95	156	8	156	8	y	0.96	201	8	201	8	y	0.94	165	11	165	11	y	0.97	155	4	155	4	y	ENSMUSG00000000673.10	Haao	chr17	protein_coding	3-hydroxyanthranilate 3,4-dioxygenase
novel_NIR_8960	chr17	84139824	84142904	-	84139824	84150625	A5SS	ENSMUST00000234214.2	novel	0.70	7	3	7	3	y	0.80	12	3	12	3	y	0.82	9	2	9	2	y	0.65	11	6	11	6	y	0.83	15	3	15	3	y	1.00	5	0	5	0	y	0.82	18	4	18	4	y	0.82	9	2	9	2	y	0.72	21	8	21	8	y	0.76	26	8	26	8	y	0.31	5	11	5	11	y	0.00	0	4	0	4	n	ENSMUSG00000000673.10	Haao	chr17	protein_coding	3-hydroxyanthranilate 3,4-dioxygenase
novel_NIR_8961	chr17	84146007	84150625	-	84139824	84150625	A3SS	ENSMUST00000234214.2	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.14	1	6	1	6	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.33	4	8	4	8	y	0.00	0	11	0	11	n	0.00	0	4	0	4	n	ENSMUSG00000000673.10	Haao	chr17	protein_coding	3-hydroxyanthranilate 3,4-dioxygenase
novel_NIR_8962	chr17	84146313	84150633	-	84146313	84150280	A5SS&ES	ENSMUST00000234312.2	novel	0.33	13	27	13	27	y	0.61	28	18	28	18	y	0.64	18	10	18	10	y	0.48	15	16	15	16	y	0.48	30	32	30	32	y	0.29	5	12	5	12	y	0.49	24	25	24	25	y	0.58	18	13	18	13	y	0.43	24	32	24	32	y	0.47	28	31	28	31	y	0.40	17	26	17	26	y	0.41	19	27	19	27	y	ENSMUSG00000000673.10	Haao	chr17	protein_coding	3-hydroxyanthranilate 3,4-dioxygenase
novel_NIR_8963	chr17	84150376	84150633	-	84150376	84150625	A5SS	ENSMUST00000234312.2	novel	0.08	3	33	3	33	n	0.17	5	24	5	24	y	0.06	1	15	1	15	n	0.00	0	22	0	22	n	0.09	3	30	3	30	n	0.00	0	19	0	19	n	0.00	0	23	0	23	n	0.00	0	15	0	15	n	0.00	0	37	0	37	n	0.00	0	43	0	43	n	0.08	3	34	3	34	n	0.19	8	35	8	35	y	ENSMUSG00000000673.10	Haao	chr17	protein_coding	3-hydroxyanthranilate 3,4-dioxygenase
novel_NIR_8964	chr17	84330484	84333592	-	84330484	84333359	5pMXE	ENSMUST00000234353.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000117446.2	Gm35551	chr17	lncRNA	predicted gene, 35551
novel_NIR_8965	chr17	84442012	84442265	-	84442108	84442265	A3SS	ENSMUST00000234741.2	novel	0.78	14	4	14	4	y	0.80	20	5	20	5	y	1.00	4	0	4	0	y	0.88	15	2	15	2	y	0.76	31	10	31	10	y	0.60	3	2	3	2	y	0.85	29	5	29	5	y	0.57	13	10	13	10	y	0.71	12	5	12	5	y	0.66	27	14	27	14	y	0.72	21	8	21	8	y	0.65	17	9	17	9	y	ENSMUSG00000117485.2	Gm19696	chr17	lncRNA	predicted gene, 19696
novel_NIR_8966	chr17	84442012	84442780	-	84442430	84442780	A3SS&ES	ENSMUST00000234741.2	novel	0.08	2	22	2	22	n	0.21	7	27	7	27	y	0.00	0	6	0	6	n	0.25	8	24	8	24	y	0.06	2	32	2	32	n	0.00	0	13	0	13	n	0.10	5	46	5	46	n	0.00	0	21	0	21	n	0.04	1	22	1	22	n	0.15	4	22	4	22	y	0.21	7	27	7	27	y	0.24	7	22	7	22	y	ENSMUSG00000117485.2	Gm19696	chr17	lncRNA	predicted gene, 19696
novel_NIR_8967	chr17	84442980	84444478	-	84442980	84443364	5pMXE	ENSMUST00000234322.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000117485.2	Gm19696	chr17	lncRNA	predicted gene, 19696
novel_NIR_8968	chr17	84442980	84444478	-	84442980	84447149	A5SS	ENSMUST00000234741.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000117485.2	Gm19696	chr17	lncRNA	predicted gene, 19696
novel_NIR_8969	chr17	84442980	84444478	-	84442980	84463668	A5SS	ENSMUST00000234659.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000117485.2	Gm19696	chr17	lncRNA	predicted gene, 19696
novel_NIR_8970	chr17	84442980	84444622	-	84442980	84443364	5pMXE	ENSMUST00000234322.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000117485.2	Gm19696	chr17	lncRNA	predicted gene, 19696
novel_NIR_8971	chr17	84442980	84444622	-	84442980	84447149	A5SS	ENSMUST00000234741.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000117485.2	Gm19696	chr17	lncRNA	predicted gene, 19696
novel_NIR_8972	chr17	84442980	84444622	-	84442980	84463668	A5SS	ENSMUST00000234659.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000117485.2	Gm19696	chr17	lncRNA	predicted gene, 19696
novel_NIR_8973	chr17	84444103	84444478	-	84444103	84444622	A5SS	ENSMUST00000234492.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	4	2	4	2	y	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.40	4	6	4	6	y	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.00	0	3	0	3	n	ENSMUSG00000117485.2	Gm19696	chr17	lncRNA	predicted gene, 19696
novel_NIR_8974	chr17	84444103	84444478	-	84444103	84453641	A5SS	ENSMUST00000234394.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000117485.2	Gm19696	chr17	lncRNA	predicted gene, 19696
novel_NIR_8975	chr17	84444103	84444478	-	84444103;84444379	84444307;84444478	ES	ENSMUST00000234314.2	novel	0.00	0	5.5	0	3;8	n	0.00	0	11.0	0	8;14	n	0.00	0	3.0	0	4;2	n	0.35	4	7.5	4	4;11	y	0.08	1	12.0	1	8;16	n	0.00	0	4.5	0	3;6	n	0.23	4	13.5	4	8;19	y	0.10	1	9.5	1	5;14	n	0.00	0	5.5	0	2;9	n	0.00	0	11.0	0	7;15	n	0.22	2	7.0	2	4;10	y	0.00	0	9.5	0	7;12	n	ENSMUSG00000117485.2	Gm19696	chr17	lncRNA	predicted gene, 19696
novel_NIR_8976	chr17	84444396	84444478	-	84444379	84444478	A3SS	ENSMUST00000234314.2	novel	0.00	0	8	0	8	n	0.22	4	14	4	14	y	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.05	1	19	1	19	n	0.07	1	14	1	14	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	ENSMUSG00000117485.2	Gm19696	chr17	lncRNA	predicted gene, 19696
novel_NIR_8977	chr17	84580252	84590964	-	84580252	84617315	A5SS	ENSMUST00000047524.10	novel	0.29	2	5	2	5	y	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.08	1	12	1	12	n	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.14	1	6	1	6	n	0.31	4	9	4	9	y	0.20	2	8	2	8	y	0.09	1	10	1	10	n	ENSMUSG00000024251.11	Thada	chr17	protein_coding	thyroid adenoma associated
novel_NIR_8978	chr17	84688972	84693939	-	84644310	84693939	A3SS	ENSMUST00000047524.10	novel	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.40	2	3	2	3	y	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000024251.11	Thada	chr17	protein_coding	thyroid adenoma associated
novel_NIR_8979	chr17	84746961	84747423	-	84744146	84747423	A3SS	ENSMUST00000047524.10	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000024251.11	Thada	chr17	protein_coding	thyroid adenoma associated
novel_NIR_8980	chr17	84771882	84773522	-	84771929	84773522	A3SS	ENSMUST00000047524.10	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	4	4	4	4	y	0.50	1	1	1	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.33	2	4	2	4	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000024251.11	Thada	chr17	protein_coding	thyroid adenoma associated
novel_NIR_8981	chr17	84956892	84957137	+	84956741	84957137	A5SS	ENSMUST00000025101.10	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.67	4	2	4	2	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000024253.10	Dync2li1	chr17	protein_coding	dynein cytoplasmic 2 light intermediate chain 1
novel_NIR_8982	chr17	84956969	84957137	+	84956741	84957137	A5SS	ENSMUST00000025101.10	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.71	5	2	5	2	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000024253.10	Dync2li1	chr17	protein_coding	dynein cytoplasmic 2 light intermediate chain 1
novel_NIR_8983	chr17	84979929	84980951	-	84977863	84980951	A3SS	ENSMUST00000163375.2	novel	1.00	10	0	10	0	y	1.00	14	0	14	0	y	1.00	8	0	8	0	y	1.00	5	0	5	0	y	1.00	10	0	10	0	y	1.00	1	0	1	0	n	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	13	0	13	0	y	1.00	15	0	15	0	y	1.00	10	0	10	0	y	1.00	15	0	15	0	y	ENSMUSG00000040505.14	Abcg5	chr17	protein_coding	ATP binding cassette subfamily G member 5
novel_NIR_8984	chr17	84993135	84994048	+	84983811	84994048	A5SS	ENSMUST00000170725.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024254.16	Abcg8	chr17	protein_coding	ATP binding cassette subfamily G member 8
novel_NIR_8985	chr17	8501849	8502694	+	8501849	8502698	A3SS	ENSMUST00000145402.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023861.18	Mpc1	chr17	protein_coding	mitochondrial pyruvate carrier 1
novel_NIR_8986	chr17	8502793	8507432	+	8502793	8515359	A3SS	ENSMUST00000046754.15	novel	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	5	0	5	0	y	1.00	1	0	1	0	n	ENSMUSG00000023861.18	Mpc1	chr17	protein_coding	mitochondrial pyruvate carrier 1
novel_NIR_8987	chr17	8502793	8507432	+	8503516	8507432	5pMXE	ENSMUST00000142594.8	novel	0.75	3	1	3	1	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.14	1	6	1	6	n	-	-	-	-	-	-	0.45	5	6	5	6	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	0.43	3	4	3	4	y	0.83	5	1	5	1	y	1.00	1	0	1	0	n	ENSMUSG00000023861.18	Mpc1	chr17	protein_coding	mitochondrial pyruvate carrier 1
novel_NIR_8988	chr17	8502793	8508274	+	8502793	8512247	A3SS	ENSMUST00000145402.8	novel	0.00	0	778	0	778	n	0.00	0	720	0	720	n	0.00	0	421	0	421	n	1.00	3	0	3	0	y	0.00	0	962	0	962	n	0.00	0	372	0	372	n	0.00	0	874	0	874	n	0.00	0	403	0	403	n	0.00	0	664	0	664	n	0.00	0	1006	0	1006	n	0.00	0	924	0	924	n	0.00	0	848	0	848	n	ENSMUSG00000023861.18	Mpc1	chr17	protein_coding	mitochondrial pyruvate carrier 1
novel_NIR_8989	chr17	8502793	8508274	+	8502793	8515359	A3SS	ENSMUST00000046754.15	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023861.18	Mpc1	chr17	protein_coding	mitochondrial pyruvate carrier 1
novel_NIR_8990	chr17	8502793	8515367	+	8502793	8512247	3pMXE	ENSMUST00000147427.2	novel	0.00	0	778	0	778	n	0.00	2	720	2	720	n	0.00	0	421	0	421	n	1.00	3	0	3	0	y	0.00	2	962	2	962	n	0.00	0	372	0	372	n	0.01	6	874	6	874	n	0.01	3	403	3	403	n	0.00	1	664	1	664	n	0.00	0	1006	0	1006	n	0.00	0	924	0	924	n	0.00	0	848	0	848	n	ENSMUSG00000023861.18	Mpc1	chr17	protein_coding	mitochondrial pyruvate carrier 1
novel_NIR_8991	chr17	8502793	8515367	+	8502793;8512327	8512247;8515367	ES	ENSMUST00000124023.8	novel	0.00	0	391.0	0	778;4	n	0.01	2	362.0	2	720;4	n	0.00	0	211.0	0	421;1	n	0.67	3	1.5	3	0;3	y	0.00	2	484.5	2	962;7	n	0.00	0	187.5	0	372;3	n	0.01	6	440.0	6	874;6	n	0.01	3	203.0	3	403;3	n	0.00	1	334.5	1	664;5	n	0.00	0	504.5	0	1006;3	n	0.00	0	466.5	0	924;9	n	0.00	0	426.0	0	848;4	n	ENSMUSG00000023861.18	Mpc1	chr17	protein_coding	mitochondrial pyruvate carrier 1
novel_NIR_8992	chr17	8502793	8515367	+	8502793;8515362	8515359;8515367	ES	ENSMUST00000046754.15	novel	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	1.00	3	0.0	3	0;0	y	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	1.00	6	0.0	6	0;0	y	1.00	3	0.0	3	0;0	y	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023861.18	Mpc1	chr17	protein_coding	mitochondrial pyruvate carrier 1
novel_NIR_8993	chr17	8502793	8515367	+	8515262	8515367	5pMXE	ENSMUST00000130559.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023861.18	Mpc1	chr17	protein_coding	mitochondrial pyruvate carrier 1
novel_NIR_8994	chr17	8503059	8507432	+	8503516	8507432	5pMXE	ENSMUST00000142594.8	novel	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000023861.18	Mpc1	chr17	protein_coding	mitochondrial pyruvate carrier 1
novel_NIR_8995	chr17	8503692	8515367	+	8512327	8515367	A5SS&ES	ENSMUST00000124023.8	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.22	2	7	2	7	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	ENSMUSG00000023861.18	Mpc1	chr17	protein_coding	mitochondrial pyruvate carrier 1
novel_NIR_8996	chr17	8503692	8515367	+	8515262	8515367	5pMXE	ENSMUST00000130559.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023861.18	Mpc1	chr17	protein_coding	mitochondrial pyruvate carrier 1
novel_NIR_8997	chr17	8503692	8515367	+	8515362	8515367	A5SS&ES	ENSMUST00000046754.15	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023861.18	Mpc1	chr17	protein_coding	mitochondrial pyruvate carrier 1
novel_NIR_8998	chr17	85084562	85089467	-	85084562	85084925	5pMXE	ENSMUST00000159222.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024120.13	Lrpprc	chr17	protein_coding	leucine-rich PPR-motif containing
novel_NIR_8999	chr17	85084562	85095631	-	85084562	85084925	5pMXE	ENSMUST00000159222.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024120.13	Lrpprc	chr17	protein_coding	leucine-rich PPR-motif containing
novel_NIR_9000	chr17	85084562	85096232	-	85084562	85084925	5pMXE	ENSMUST00000159222.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	8	0	8	0	y	1.00	4	0	4	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	8	0	8	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000024120.13	Lrpprc	chr17	protein_coding	leucine-rich PPR-motif containing
novel_NIR_9001	chr17	85084562	85096232	-	85084562	85097793	A5SS	ENSMUST00000112308.9	novel	0.00	0	28	0	28	n	0.11	2	17	2	17	n	0.12	8	58	8	58	n	0.07	4	55	4	55	n	0.06	4	62	4	62	n	0.06	2	29	2	29	n	0.16	8	43	8	43	y	0.06	3	48	3	48	n	0.05	1	19	1	19	n	0.06	5	85	5	85	n	0.00	0	49	0	49	n	0.07	4	57	4	57	n	ENSMUSG00000024120.13	Lrpprc	chr17	protein_coding	leucine-rich PPR-motif containing
novel_NIR_9002	chr17	8514891	8515367	+	8512327	8515367	A5SS	ENSMUST00000124023.8	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.29	2	5	2	5	y	0.25	1	3	1	3	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	ENSMUSG00000023861.18	Mpc1	chr17	protein_coding	mitochondrial pyruvate carrier 1
novel_NIR_9003	chr17	8514891	8515367	+	8515262	8515367	5pMXE	ENSMUST00000130559.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023861.18	Mpc1	chr17	protein_coding	mitochondrial pyruvate carrier 1
novel_NIR_9004	chr17	8514891	8515367	+	8515362	8515367	A5SS&ES	ENSMUST00000046754.15	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023861.18	Mpc1	chr17	protein_coding	mitochondrial pyruvate carrier 1
novel_NIR_9005	chr17	8517469	8518383	-	8517469	8529849	A5SS	ENSMUST00000130639.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000087478.2	4930506C21Rik	chr17	lncRNA	RIKEN cDNA 4930506C21 gene
novel_NIR_9006	chr17	85390743	85397673	-	85390743	85397534	5pMXE	ENSMUST00000072406.5	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.17	2	10	2	10	y	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000024127.16	Prepl	chr17	protein_coding	prolyl endopeptidase-like
novel_NIR_9007	chr17	85390994	85397534	-	85390743	85397534	A3SS	ENSMUST00000072406.5	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.18	2	9	2	9	y	-	-	-	-	-	-	0.00	0	10	0	10	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000024127.16	Prepl	chr17	protein_coding	prolyl endopeptidase-like
novel_NIR_9008	chr17	85390994	85397534	-	85395870	85397534	A3SS&ES	ENSMUST00000234676.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000024127.16	Prepl	chr17	protein_coding	prolyl endopeptidase-like
novel_NIR_9009	chr17	85395870	85396176	-	85395870	85397534	A5SS	ENSMUST00000234676.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000024127.16	Prepl	chr17	protein_coding	prolyl endopeptidase-like
novel_NIR_9010	chr17	85421275	85433894	+	85421275	85468318	A3SS	ENSMUST00000234501.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000071037.7	Camkmt	chr17	protein_coding	calmodulin-lysine N-methyltransferase
novel_NIR_9011	chr17	85421275	85433894	+	85421275	85510205	A3SS	ENSMUST00000234822.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000071037.7	Camkmt	chr17	protein_coding	calmodulin-lysine N-methyltransferase
novel_NIR_9012	chr17	85421275	85433894	+	85421275	85699001	A3SS	ENSMUST00000095188.7	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.75	6	2	6	2	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.14	1	6	1	6	n	ENSMUSG00000071037.7	Camkmt	chr17	protein_coding	calmodulin-lysine N-methyltransferase
novel_NIR_9013	chr17	86192036	86235937	-	86223781	86235937	A3SS&ES	ENSMUST00000234707.2	novel	0.67	4	2	4	2	y	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	ENSMUSG00000117501.2	Gm30117	chr17	lncRNA	predicted gene, 30117
novel_NIR_9014	chr17	86201231	86223674	-	86170420	86223674	A3SS	ENSMUST00000234707.2	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.57	4	3	4	3	y	0.80	4	1	4	1	y	1.00	3	0	3	0	y	0.00	0	1	0	1	n	ENSMUSG00000117501.2	Gm30117	chr17	lncRNA	predicted gene, 30117
novel_NIR_9015	chr17	86223781	86228674	-	86223781	86235937	A5SS	ENSMUST00000234707.2	novel	0.33	1	2	1	2	n	0.20	1	4	1	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	0.17	1	5	1	5	n	0.33	1	2	1	2	n	0.50	2	2	2	2	y	ENSMUSG00000117501.2	Gm30117	chr17	lncRNA	predicted gene, 30117
novel_NIR_9016	chr17	86229369	86235937	-	86223781	86235937	A3SS	ENSMUST00000234707.2	novel	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.44	4	5	4	5	y	0.38	3	5	3	5	y	0.33	1	2	1	2	n	0.50	2	2	2	2	y	ENSMUSG00000117501.2	Gm30117	chr17	lncRNA	predicted gene, 30117
novel_NIR_9017	chr17	86295937	86304934	-	86295937	86347720	A5SS	ENSMUST00000234951.2	novel	1.00	9	0	9	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	8	0	8	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	9	0	9	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	ENSMUSG00000024135.11	Srbd1	chr17	protein_coding	S1 RNA binding domain 1
novel_NIR_9018	chr17	86295937	86308859	-	86295937	86347720	A5SS	ENSMUST00000234951.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000024135.11	Srbd1	chr17	protein_coding	S1 RNA binding domain 1
novel_NIR_9019	chr17	86295937;86304975	86304934;86307749	-	86295937	86307749	cassetteExon	ENSMUST00000234761.2	novel	0.31	9.0	20	9;9	20	y	0.17	5.5	26	6;5	26	y	0.00	0.0	21	0;0	21	n	0.29	7.0	17	8;6	17	y	0.13	4.0	26	2;6	26	n	0.06	1.0	15	1;1	15	n	0.17	5.5	27	6;5	27	y	0.00	0.0	19	0;0	19	n	0.23	10.5	35	9;12	35	y	0.18	5.0	23	4;6	23	y	0.03	1.0	32	2;0	32	n	0.12	3.5	26	3;4	26	n	ENSMUSG00000024135.11	Srbd1	chr17	protein_coding	S1 RNA binding domain 1
novel_NIR_9020	chr17	87333090	87335127	+	87333081	87335127	A5SS	ENSMUST00000160269.2	novel	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	ENSMUSG00000024146.10	Cript	chr17	protein_coding	cysteine-rich PDZ-binding protein
novel_NIR_9021	chr17	87333103	87338436	+	87333103	87335077	3pMXE	ENSMUST00000160824.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024146.10	Cript	chr17	protein_coding	cysteine-rich PDZ-binding protein
novel_NIR_9022	chr17	87565517	87569780	-	87565517	87571569	A5SS	ENSMUST00000144236.9	novel	0.00	0	3	0	3	n	0.00	0	15	0	15	n	0.08	2	22	2	22	n	0.42	5	7	5	7	n	0.11	2	17	2	17	n	0.00	0	15	0	15	n	0.00	0	18	0	18	n	0.00	0	23	0	23	n	0.00	0	7	0	7	n	0.14	1	6	1	6	n	0.11	1	8	1	8	n	0.36	4	7	4	7	y	ENSMUSG00000024150.13	Mcfd2	chr17	protein_coding	multiple coagulation factor deficiency 2
novel_NIR_9023	chr17	87565517	87570352	-	87565517	87571569	A5SS	ENSMUST00000144236.9	novel	0.40	2	3	2	3	y	0.00	0	15	0	15	n	0.00	0	22	0	22	n	0.22	2	7	2	7	n	0.00	0	17	0	17	n	0.00	0	15	0	15	n	0.00	0	18	0	18	n	0.00	0	23	0	23	n	0.12	1	7	1	7	n	0.00	0	6	0	6	n	0.11	1	8	1	8	n	0.00	0	7	0	7	n	ENSMUSG00000024150.13	Mcfd2	chr17	protein_coding	multiple coagulation factor deficiency 2
novel_NIR_9024	chr17	87565517;87569876	87569780;87573263	-	87565517;87571793	87571569;87573263	MXE	ENSMUST00000144236.9	novel	0.17	0.5	2.5	0;1	3;2	n	0.00	0.0	10.0	0;0	15;5	n	0.06	1.0	16.5	2;0	22;11	n	0.37	3.5	6.0	5;2	7;5	y	0.07	1.0	14.0	2;0	17;11	n	0.00	0.0	11.5	0;0	15;8	n	0.09	1.0	10.5	0;2	18;3	n	0.03	0.5	15.5	0;1	23;8	n	0.11	0.5	4.0	0;1	7;1	n	0.06	0.5	8.0	1;0	6;10	n	0.11	0.5	4.0	1;0	8;0	n	0.27	2.0	5.5	4;0	7;4	n	ENSMUSG00000024150.13	Mcfd2	chr17	protein_coding	multiple coagulation factor deficiency 2
novel_NIR_9025	chr17	87566278	87573263	-	87571793	87573263	A3SS&ES	ENSMUST00000144236.9	novel	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.31	5	11	5	11	y	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000024150.13	Mcfd2	chr17	protein_coding	multiple coagulation factor deficiency 2
novel_NIR_9026	chr17	87566309	87569780	-	87566309	87571569	A5SS	ENSMUST00000139258.2	novel	0.00	0	4	0	4	n	0.20	2	8	2	8	y	0.14	2	12	2	12	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.60	6	4	6	4	y	0.36	4	7	4	7	n	0.33	2	4	2	4	n	0.29	2	5	2	5	n	1.00	1	0	1	0	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	ENSMUSG00000024150.13	Mcfd2	chr17	protein_coding	multiple coagulation factor deficiency 2
novel_NIR_9027	chr17	87566309	87569780	-	87566309	87573220	A5SS	ENSMUST00000129616.8	novel	0.00	0	13	0	13	n	0.11	2	16	2	16	n	0.05	2	39	2	39	n	0.00	0	26	0	26	n	0.00	0	34	0	34	n	0.15	6	33	6	33	y	0.15	4	22	4	22	y	0.06	2	29	2	29	n	0.09	2	21	2	21	n	0.04	1	23	1	23	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	ENSMUSG00000024150.13	Mcfd2	chr17	protein_coding	multiple coagulation factor deficiency 2
novel_NIR_9028	chr17	87566309;87569876	87569780;87573263	-	87566309;87571793	87571569;87573263	MXE	ENSMUST00000139258.2	novel	0.14	0.5	3.0	0;1	4;2	n	0.13	1.0	6.5	2;0	8;5	n	0.08	1.0	11.5	2;0	12;11	n	0.25	1.0	3.0	0;2	1;5	n	0.00	0.0	9.5	0;0	8;11	n	0.33	3.0	6.0	6;0	4;8	n	0.38	3.0	5.0	4;2	7;3	y	0.20	1.5	6.0	2;1	4;8	n	0.33	1.5	3.0	2;1	5;1	n	0.09	0.5	5.0	1;0	0;10	n	0.00	0.0	2.5	0;0	5;0	n	0.00	0.0	4.5	0;0	5;4	n	ENSMUSG00000024150.13	Mcfd2	chr17	protein_coding	multiple coagulation factor deficiency 2
novel_NIR_9029	chr17	87569876	87571569	-	87565517	87571569	A3SS	ENSMUST00000144236.9	novel	0.40	2	3	2	3	y	0.00	0	15	0	15	n	0.04	1	22	1	22	n	0.12	1	7	1	7	n	0.00	0	17	0	17	n	0.00	0	15	0	15	n	0.00	0	18	0	18	n	0.00	0	23	0	23	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	ENSMUSG00000024150.13	Mcfd2	chr17	protein_coding	multiple coagulation factor deficiency 2
novel_NIR_9030	chr17	87569876	87571569	-	87566309	87571569	A3SS	ENSMUST00000139258.2	novel	0.33	2	4	2	4	y	0.00	0	8	0	8	n	0.08	1	12	1	12	n	0.50	1	1	1	1	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	5	0	5	n	ENSMUSG00000024150.13	Mcfd2	chr17	protein_coding	multiple coagulation factor deficiency 2
novel_NIR_9031	chr17	87569876	87573263	-	87571793	87573263	A3SS&ES	ENSMUST00000139258.2	novel	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.29	2	5	2	5	y	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.40	2	3	2	3	n	0.11	1	8	1	8	n	0.50	1	1	1	1	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000024150.13	Mcfd2	chr17	protein_coding	multiple coagulation factor deficiency 2
novel_NIR_9032	chr17	87569876	87573263	-	87571793	87573263	A3SS&ES	ENSMUST00000144236.9	novel	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.29	2	5	2	5	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.40	2	3	2	3	y	0.11	1	8	1	8	n	0.50	1	1	1	1	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000024150.13	Mcfd2	chr17	protein_coding	multiple coagulation factor deficiency 2
novel_NIR_9033	chr17	87570435	87571569	-	87566309	87571569	A3SS	ENSMUST00000139258.2	novel	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.50	1	1	1	1	n	0.20	2	8	2	8	y	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	5	0	5	n	ENSMUSG00000024150.13	Mcfd2	chr17	protein_coding	multiple coagulation factor deficiency 2
novel_NIR_9034	chr17	87570435	87573263	-	87571793	87573263	A3SS&ES	ENSMUST00000144236.9	novel	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.08	1	11	1	11	n	0.00	0	5	0	5	n	0.15	2	11	2	11	y	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.50	1	1	1	1	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000024150.13	Mcfd2	chr17	protein_coding	multiple coagulation factor deficiency 2
novel_NIR_9035	chr17	87571793	87573220	-	87565517	87573220	A3SS	ENSMUST00000155904.2	novel	0.11	5	40	5	40	n	0.04	2	46	2	46	n	0.18	13	58	13	58	y	0.00	0	55	0	55	n	0.04	5	114	5	114	n	0.07	4	57	4	57	n	0.03	2	64	2	64	n	0.00	0	62	0	62	n	0.05	2	36	2	36	n	0.04	2	55	2	55	n	0.00	0	50	0	50	n	0.13	5	33	5	33	n	ENSMUSG00000024150.13	Mcfd2	chr17	protein_coding	multiple coagulation factor deficiency 2
novel_NIR_9036	chr17	87571793	87573220	-	87566309	87573220	A3SS	ENSMUST00000129616.8	novel	0.28	5	13	5	13	y	0.11	2	16	2	16	n	0.25	13	39	13	39	y	0.00	0	26	0	26	n	0.13	5	34	5	34	n	0.11	4	33	4	33	n	0.08	2	22	2	22	n	0.00	0	29	0	29	n	0.09	2	21	2	21	n	0.08	2	23	2	23	n	0.00	0	8	0	8	n	0.28	5	13	5	13	y	ENSMUSG00000024150.13	Mcfd2	chr17	protein_coding	multiple coagulation factor deficiency 2
novel_NIR_9037	chr17	87571793	87573220	-	87571793	87573263	A5SS	ENSMUST00000144236.9	novel	0.71	5	2	5	2	y	0.29	2	5	2	5	y	0.54	13	11	13	11	y	0.00	0	5	0	5	n	0.31	5	11	5	11	y	0.33	4	8	4	8	y	0.40	2	3	2	3	y	0.00	0	8	0	8	n	0.67	2	1	2	1	y	0.17	2	10	2	10	y	-	-	-	-	-	-	0.56	5	4	5	4	y	ENSMUSG00000024150.13	Mcfd2	chr17	protein_coding	multiple coagulation factor deficiency 2
novel_NIR_9038	chr17	87582798	87584840	-	87582798;87583902	87583874;87584840	ES	ENSMUST00000137539.8	novel	0.00	0	5.0	0	6;4	n	0.00	0	3.0	0	2;4	n	0.00	0	5.5	0	8;3	n	0.00	0	5.5	0	8;3	n	0.00	0	9.5	0	12;7	n	0.00	0	2.5	0	2;3	n	0.00	0	7.5	0	11;4	n	0.00	0	8.0	0	10;6	n	0.00	0	1.5	0	3;0	n	0.29	4	10.0	4	13;7	y	0.00	0	13.5	0	19;8	n	0.00	0	7.5	0	9;6	n	ENSMUSG00000085287.9	4833418N02Rik	chr17	lncRNA	RIKEN cDNA 4833418N02 gene
novel_NIR_9039	chr17	87584736	87584840	-	87583902	87584840	A3SS	ENSMUST00000137539.8	novel	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.12	1	7	1	7	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	ENSMUSG00000085287.9	4833418N02Rik	chr17	lncRNA	RIKEN cDNA 4833418N02 gene
novel_NIR_9040	chr17	87588190	87588640	-	87588190	87589602	A5SS	ENSMUST00000146560.9	novel	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.20	1	4	1	4	n	1.00	1	0	1	0	n	0.00	0	8	0	8	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	ENSMUSG00000085287.9	4833418N02Rik	chr17	lncRNA	RIKEN cDNA 4833418N02 gene
novel_NIR_9041	chr17	87597792	87600239	+	87590838	87600239	A5SS	ENSMUST00000126497.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000036918.17	Ttc7	chr17	protein_coding	tetratricopeptide repeat domain 7
novel_NIR_9042	chr17	87600407	87601372	+	87600407	87601437	A3SS	ENSMUST00000144204.8	novel	1.00	3	0	3	0	y	0.50	1	1	1	1	n	0.75	9	3	9	3	y	1.00	6	0	6	0	y	0.86	12	2	12	2	y	0.50	3	3	3	3	y	0.83	5	1	5	1	y	1.00	8	0	8	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	ENSMUSG00000036918.17	Ttc7	chr17	protein_coding	tetratricopeptide repeat domain 7
novel_NIR_9043	chr17	87654129	87656119	+	87654129	87669277	A3SS	ENSMUST00000144204.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036918.17	Ttc7	chr17	protein_coding	tetratricopeptide repeat domain 7
novel_NIR_9044	chr17	87654129	87656655	+	87654129	87669277	A3SS	ENSMUST00000144204.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036918.17	Ttc7	chr17	protein_coding	tetratricopeptide repeat domain 7
novel_NIR_9045	chr17	87743362	87744422	-	87743362	87754221	A5SS	ENSMUST00000234406.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036438.15	Calm2	chr17	protein_coding	calmodulin 2
novel_NIR_9046	chr17	87764498	87766657	-	87764498	87766601	A5SS	ENSMUST00000234358.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.40	2	3	2	3	y	0.50	1	1	1	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000117545.2	Gm30794	chr17	lncRNA	predicted gene, 30794
novel_NIR_9047	chr17	87764498	87766657	-	87764498	87767287	A5SS	ENSMUST00000234806.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000117545.2	Gm30794	chr17	lncRNA	predicted gene, 30794
novel_NIR_9048	chr17	88297776	88298152	+	88297776;88298058	88297859;88298152	ES	ENSMUST00000005503.5	novel	0.00	0	24.0	0	22;26	n	0.00	0	30.5	0	22;39	n	0.00	0	33.5	0	34;33	n	0.00	0	30.5	0	33;28	n	0.00	0	34.0	0	35;33	n	0.21	4	15.5	4	15;16	y	0.02	1	51.5	1	46;57	n	0.00	0	18.0	0	21;15	n	0.00	0	23.0	0	22;24	n	0.00	0	33.0	0	24;42	n	0.00	0	32.0	0	26;38	n	0.00	0	32.5	0	25;40	n	ENSMUSG00000005370.5	Msh6	chr17	protein_coding	mutS homolog 6
novel_NIR_9049	chr17	88748312	88769637	+	88748312	88767029	A3SS&ES	ENSMUST00000155640.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034998.19	Foxn2	chr17	protein_coding	forkhead box N2
novel_NIR_9050	chr17	88748312	88769637	+	88748312	88770141	A3SS	ENSMUST00000112238.9	novel	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.00	0	7	0	7	n	0.25	2	6	2	6	y	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	ENSMUSG00000034998.19	Foxn2	chr17	protein_coding	forkhead box N2
novel_NIR_9051	chr17	88749631	88770141	+	88748312	88770141	A5SS	ENSMUST00000112238.9	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.25	2	6	2	6	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	ENSMUSG00000034998.19	Foxn2	chr17	protein_coding	forkhead box N2
novel_NIR_9052	chr17	88749631	88770141	+	88767096	88770141	A5SS&ES	ENSMUST00000155640.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034998.19	Foxn2	chr17	protein_coding	forkhead box N2
novel_NIR_9053	chr17	88750400	88770141	+	88748312	88770141	A5SS	ENSMUST00000112238.9	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.18	2	9	2	9	y	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.11	1	8	1	8	n	0.12	1	7	1	7	n	0.00	0	5	0	5	n	ENSMUSG00000034998.19	Foxn2	chr17	protein_coding	forkhead box N2
novel_NIR_9054	chr17	88750400	88770141	+	88767096	88770141	A5SS&ES	ENSMUST00000155640.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000034998.19	Foxn2	chr17	protein_coding	forkhead box N2
novel_NIR_9055	chr17	88786768	88793831	+	88786768;88791897	88791829;88793831	ES	ENSMUST00000112238.9	novel	0.70	7	3.0	7	5;1	y	0.00	0	3.0	0	3;3	n	0.08	1	11.0	1	13;9	n	0.52	6	5.5	6	4;7	y	0.38	7	11.5	7	10;13	y	0.32	3	6.5	3	8;5	y	0.36	5	9.0	5	9;9	y	0.32	3	6.5	3	6;7	y	0.10	1	9.5	1	15;4	n	0.50	9	9.0	9	10;8	y	0.12	1	7.5	1	10;5	n	0.25	2	6.0	2	6;6	y	ENSMUSG00000034998.19	Foxn2	chr17	protein_coding	forkhead box N2
novel_NIR_9056	chr17	88905169	88905604	+	88905169	88942549	A3SS	ENSMUST00000137138.2	novel	0.67	4	2	4	2	y	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000033855.16	Ston1	chr17	protein_coding	stonin 1
novel_NIR_9057	chr17	88905169	88905604	+	88905169	88951766	A3SS	ENSMUST00000153613.2	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033855.16	Ston1	chr17	protein_coding	stonin 1
novel_NIR_9058	chr17	90905057	90924822	-	90905057	90928293	A5SS	ENSMUST00000072671.14	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000024109.19	Nrxn1	chr17	protein_coding	neurexin I
novel_NIR_9059	chr17	90905057	90924822	-	90905057	90930848	A5SS	ENSMUST00000177342.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024109.19	Nrxn1	chr17	protein_coding	neurexin I
novel_NIR_9060	chr17	9215960	9219960	+	9215935	9219960	A5SS	ENSMUST00000024650.12	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000023873.14	1700010I14Rik	chr17	protein_coding	RIKEN cDNA 1700010I14 gene
novel_NIR_9061	chr17	95042710	95046882	-	95042938	95046882	A3SS&ES	ENSMUST00000234990.2	novel	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	18	0	18	n	0.00	0	15	0	15	n	0.00	0	16	0	16	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.00	0	22	0	22	n	0.25	2	6	2	6	y	0.00	0	5	0	5	n	0.00	0	13	0	13	n	ENSMUSG00000055660.10	Mettl4	chr17	protein_coding	methyltransferase like 4
novel_NIR_9062	chr17	95127824	95128043	-	95127824	95142120	A5SS	ENSMUST00000234189.2	novel	0.00	0	1	0	1	n	0.83	5	1	5	1	y	0.33	1	2	1	2	n	0.83	5	1	5	1	y	0.62	5	3	5	3	y	1.00	5	0	5	0	y	0.30	3	7	3	7	y	0.67	2	1	2	1	y	0.75	3	1	3	1	y	1.00	10	0	10	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000066057.8	Gm1976	chr17	lncRNA	predicted gene 1976
novel_NIR_9063	chr17	95127824	95141750	-	95127824	95142120	A5SS	ENSMUST00000234189.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.12	1	7	1	7	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000066057.8	Gm1976	chr17	lncRNA	predicted gene 1976
novel_NIR_9064	chr17	95181536	95181730	+	95181540	95181730	A5SS	ENSMUST00000234071.2	novel	0.00	0	7	0	7	n	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.33	2	4	2	4	y	0.00	0	13	0	13	n	0.00	0	9	0	9	n	ENSMUSG00000095193.3	Gm20939	chr17	lncRNA	predicted gene, 20939
novel_NIR_9065	chr18	10024679	10029764	-	10024679	10044929	A5SS	ENSMUST00000234243.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000047879.18	Usp14	chr18	protein_coding	ubiquitin specific peptidase 14
novel_NIR_9066	chr18	10586041	10587366	-	10586041	10588439	A5SS	ENSMUST00000025142.13	novel	0.00	0	20	0	20	n	0.00	0	16	0	16	n	0.11	3	25	3	25	n	0.22	6	21	6	21	y	0.00	0	28	0	28	n	0.00	0	11	0	11	n	0.00	0	33	0	33	n	0.00	0	17	0	17	n	0.11	2	16	2	16	n	0.00	0	25	0	25	n	0.00	0	15	0	15	n	0.05	1	20	1	20	n	ENSMUSG00000024293.17	Esco1	chr18	protein_coding	establishment of sister chromatid cohesion N-acetyltransferase 1
novel_NIR_9067	chr18	10586041	10587366	-	10586041	10595676	A5SS	ENSMUST00000115864.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.75	6	2	6	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000024293.17	Esco1	chr18	protein_coding	establishment of sister chromatid cohesion N-acetyltransferase 1
novel_NIR_9068	chr18	10586041	10587366	-	10586041	10596339	A5SS	ENSMUST00000234347.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000024293.17	Esco1	chr18	protein_coding	establishment of sister chromatid cohesion N-acetyltransferase 1
novel_NIR_9069	chr18	10586041	10593746	-	10586041	10595676	A5SS	ENSMUST00000115864.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024293.17	Esco1	chr18	protein_coding	establishment of sister chromatid cohesion N-acetyltransferase 1
novel_NIR_9070	chr18	10586041	10593746	-	10586041	10596339	A5SS	ENSMUST00000234347.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024293.17	Esco1	chr18	protein_coding	establishment of sister chromatid cohesion N-acetyltransferase 1
novel_NIR_9071	chr18	10586041	10593746	-	10586041;10588550	10588439;10593746	ES	ENSMUST00000025142.13	novel	0.00	0	18.0	0	20;16	n	0.00	0	13.5	0	16;11	n	0.16	4	21.0	4	25;17	y	0.00	0	26.0	0	21;31	n	0.00	0	24.5	0	28;21	n	0.09	1	10.5	1	11;10	n	0.12	4	28.0	4	33;23	n	0.00	0	13.5	0	17;10	n	0.00	0	15.5	0	16;15	n	0.00	0	25.0	0	25;25	n	0.00	0	11.0	0	15;7	n	0.00	0	17.0	0	20;14	n	ENSMUSG00000024293.17	Esco1	chr18	protein_coding	establishment of sister chromatid cohesion N-acetyltransferase 1
novel_NIR_9072	chr18	10623707	10626832	+	10623707	10626949	A3SS	ENSMUST00000234207.2	novel	0.00	0	1	0	1	n	0.00	0	6	0	6	n	1.00	2	0	2	0	y	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000002477.6	Snrpd1	chr18	protein_coding	small nuclear ribonucleoprotein D1
novel_NIR_9073	chr18	10623707	10626832	+	10623707	10639534	A3SS	ENSMUST00000235020.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000002477.6	Snrpd1	chr18	protein_coding	small nuclear ribonucleoprotein D1
novel_NIR_9074	chr18	10623707	10627794	+	10623707	10639534	A3SS	ENSMUST00000235020.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000002477.6	Snrpd1	chr18	protein_coding	small nuclear ribonucleoprotein D1
novel_NIR_9075	chr18	10658892	10664234	-	10658892;10663089	10662978;10664234	ES	ENSMUST00000234419.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.67	1	0.5	1	1;0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1.0	0	2;0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	ENSMUSG00000002475.17	Abhd3	chr18	protein_coding	abhydrolase domain containing 3
novel_NIR_9076	chr18	11045193	11047555	-	11001223	11047555	A3SS	ENSMUST00000232314.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	ENSMUSG00000097222.3	Gata6os	chr18	lncRNA	GATA binding protein 6, opposite strand
novel_NIR_9077	chr18	11045193	11047555	-	11045005	11047555	A3SS	ENSMUST00000231895.2	novel	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.08	2	24	2	24	n	0.00	0	24	0	24	n	0.00	0	22	0	22	n	0.09	2	20	2	20	n	0.00	0	12	0	12	n	0.08	2	23	2	23	n	0.00	0	13	0	13	n	0.21	5	19	5	19	y	ENSMUSG00000097222.3	Gata6os	chr18	lncRNA	GATA binding protein 6, opposite strand
novel_NIR_9078	chr18	11047678	11048459	-	11047678	11050624	A5SS	ENSMUST00000231895.2	novel	0.25	2	6	2	6	y	0.00	0	2	0	2	n	0.55	6	5	6	5	y	0.40	6	9	6	9	y	0.43	9	12	9	12	y	0.30	3	7	3	7	y	0.19	4	17	4	17	y	0.64	14	8	14	8	y	0.45	9	11	9	11	y	0.59	13	9	13	9	y	0.40	8	12	8	12	y	0.15	3	17	3	17	y	ENSMUSG00000097222.3	Gata6os	chr18	lncRNA	GATA binding protein 6, opposite strand
novel_NIR_9079	chr18	11047678	11048529	-	11047678	11050624	A5SS	ENSMUST00000231895.2	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.36	5	9	5	9	y	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	17	0	17	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.11	2	17	2	17	n	ENSMUSG00000097222.3	Gata6os	chr18	lncRNA	GATA binding protein 6, opposite strand
novel_NIR_9080	chr18	11050252	11050624	-	11050256	11050624	A3SS	ENSMUST00000181316.2	novel	0.00	0	10	0	10	n	0.14	1	6	1	6	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.09	1	10	1	10	n	0.33	2	4	2	4	y	0.00	0	8	0	8	n	ENSMUSG00000097222.3	Gata6os	chr18	lncRNA	GATA binding protein 6, opposite strand
novel_NIR_9081	chr18	11050992	11052636	+	11052157	11052636	5pMXE	ENSMUST00000234512.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000005836.11	Gata6	chr18	protein_coding	GATA binding protein 6
novel_NIR_9082	chr18	12152557	12176271	-	12126685	12176271	A3SS	ENSMUST00000209628.2	novel	0.20	1	4	1	4	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	17	0	17	n	0.20	2	8	2	8	y	0.00	0	11	0	11	n	0.17	3	15	3	15	y	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.06	1	17	1	17	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	ENSMUSG00000049411.16	Tmem241	chr18	protein_coding	transmembrane protein 241
novel_NIR_9083	chr18	12174918	12176271	-	12126685	12176271	A3SS	ENSMUST00000209628.2	novel	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	17	0	17	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.00	0	17	0	17	n	0.00	0	6	0	6	n	0.17	2	10	2	10	y	ENSMUSG00000049411.16	Tmem241	chr18	protein_coding	transmembrane protein 241
novel_NIR_9084	chr18	12184457	12191983	-	12180691	12191983	A3SS	ENSMUST00000209628.2	novel	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.17	2	10	2	10	y	0.15	2	11	2	11	y	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.09	1	10	1	10	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000049411.16	Tmem241	chr18	protein_coding	transmembrane protein 241
novel_NIR_9085	chr18	12200162	12203137	-	12200162;12201403	12201355;12203137	ES	ENSMUST00000209628.2	novel	0.00	0	10.5	0	9;12	n	0.00	0	6.0	0	5;7	n	0.00	0	6.0	0	6;6	n	0.00	0	7.0	0	5;9	n	0.19	2	8.5	2	7;10	y	0.00	0	13.5	0	13;14	n	0.00	0	11.5	0	8;15	n	0.22	2	7.0	2	5;9	y	0.00	0	4.0	0	6;2	n	0.00	0	8.5	0	8;9	n	0.00	0	7.0	0	7;7	n	0.00	0	4.0	0	5;3	n	ENSMUSG00000049411.16	Tmem241	chr18	protein_coding	transmembrane protein 241
novel_NIR_9086	chr18	12270406	12272392	+	12270406	12270902	3pMXE	ENSMUST00000235060.2	novel	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.11	1	8	1	8	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.29	2	5	2	5	y	0.00	0	12	0	12	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	ENSMUSG00000024404.8	Riok3	chr18	protein_coding	RIO kinase 3
novel_NIR_9087	chr18	12286117	12286979	+	12286117	12288277	A3SS	ENSMUST00000234762.2	novel	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000024404.8	Riok3	chr18	protein_coding	RIO kinase 3
novel_NIR_9088	chr18	12322138	12322341	+	12322138	12322271	A3SS	ENSMUST00000234457.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000024410.16	Rmc1	chr18	protein_coding	regulator of MON1-CCZ1
novel_NIR_9089	chr18	12345322	12346314	-	12345325	12346314	A3SS	ENSMUST00000025279.6	novel	0.10	3	27	3	27	n	0.12	2	14	2	14	n	0.07	3	38	3	38	n	0.06	4	65	4	65	n	0.05	3	58	3	58	n	0.05	1	21	1	21	n	0.10	5	44	5	44	n	0.07	3	39	3	39	n	0.00	0	44	0	44	n	0.15	10	55	10	55	y	0.24	6	19	6	19	y	0.10	6	55	6	55	n	ENSMUSG00000024413.15	Npc1	chr18	protein_coding	NPC intracellular cholesterol transporter 1
novel_NIR_9090	chr18	12662665	12664889	+	12662665	12664892	A3SS	ENSMUST00000092070.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000024421.17	Lama3	chr18	protein_coding	laminin, alpha 3
novel_NIR_9091	chr18	12684855	12685835	+	12682382	12685835	A5SS	ENSMUST00000092070.13	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	ENSMUSG00000024421.17	Lama3	chr18	protein_coding	laminin, alpha 3
novel_NIR_9092	chr18	12689087	12689684	+	12686362	12689684	A5SS	ENSMUST00000092070.13	novel	0.33	2	4	2	4	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	ENSMUSG00000024421.17	Lama3	chr18	protein_coding	laminin, alpha 3
novel_NIR_9093	chr18	12781189	12817894	+	12733060	12817894	A5SS	ENSMUST00000234974.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000024424.16	Ttc39c	chr18	protein_coding	tetratricopeptide repeat domain 39C
novel_NIR_9094	chr18	12781189	12817894	+	12776530	12817894	A5SS	ENSMUST00000025294.9	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.40	4	6	4	6	y	0.50	1	1	1	1	n	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.50	2	2	2	2	y	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000024424.16	Ttc39c	chr18	protein_coding	tetratricopeptide repeat domain 39C
novel_NIR_9095	chr18	12791451	12817894	+	12733060	12817894	A5SS	ENSMUST00000234974.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000024424.16	Ttc39c	chr18	protein_coding	tetratricopeptide repeat domain 39C
novel_NIR_9096	chr18	12791451	12817894	+	12776530	12817894	A5SS	ENSMUST00000025294.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	ENSMUSG00000024424.16	Ttc39c	chr18	protein_coding	tetratricopeptide repeat domain 39C
novel_NIR_9097	chr18	12831116	12836388	+	12831116	12831392	3pMXE	ENSMUST00000234848.2	novel	0.50	2	2	2	2	y	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	8	0	8	0	y	0.92	11	1	11	1	y	0.50	1	1	1	1	n	0.38	3	5	3	5	y	-	-	-	-	-	-	0.25	1	3	1	3	n	1.00	1	0	1	0	n	0.40	6	9	6	9	y	0.67	10	5	10	5	y	ENSMUSG00000024424.16	Ttc39c	chr18	protein_coding	tetratricopeptide repeat domain 39C
novel_NIR_9098	chr18	12831116	12839746	+	12831116	12831392	3pMXE	ENSMUST00000234848.2	novel	0.33	1	2	1	2	n	0.80	4	1	4	1	y	-	-	-	-	-	-	1.00	4	0	4	0	y	0.80	4	1	4	1	y	0.50	1	1	1	1	n	0.29	2	5	2	5	y	-	-	-	-	-	-	0.57	4	3	4	3	y	1.00	4	0	4	0	y	0.31	4	9	4	9	y	0.38	3	5	3	5	y	ENSMUSG00000024424.16	Ttc39c	chr18	protein_coding	tetratricopeptide repeat domain 39C
novel_NIR_9099	chr18	12831116	12857996	+	12831116	12831392	3pMXE	ENSMUST00000234848.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.38	3	5	3	5	y	-	-	-	-	-	-	0.57	4	3	4	3	y	-	-	-	-	-	-	0.00	0	9	0	9	n	0.17	1	5	1	5	n	ENSMUSG00000024424.16	Ttc39c	chr18	protein_coding	tetratricopeptide repeat domain 39C
novel_NIR_9100	chr18	12889152	12889261	-	12889152	12889245	A5SS	ENSMUST00000121888.8	novel	0.00	0	37	0	37	n	0.31	15	33	15	33	y	0.05	1	20	1	20	n	0.03	1	30	1	30	n	0.00	0	42	0	42	n	0.06	1	16	1	16	n	0.00	0	45	0	45	n	0.00	0	16	0	16	n	0.00	0	18	0	18	n	0.00	0	44	0	44	n	0.00	0	31	0	31	n	0.00	0	42	0	42	n	ENSMUSG00000044252.19	Osbpl1a	chr18	protein_coding	oxysterol binding protein-like 1A
novel_NIR_9101	chr18	12918071	12921377	-	12907382	12921377	A3SS	ENSMUST00000234428.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000044252.19	Osbpl1a	chr18	protein_coding	oxysterol binding protein-like 1A
novel_NIR_9102	chr18	12919854	12921377	-	12907382	12921377	A3SS	ENSMUST00000234428.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000044252.19	Osbpl1a	chr18	protein_coding	oxysterol binding protein-like 1A
novel_NIR_9103	chr18	12952718	12961561	-	12952718	12996200	A5SS	ENSMUST00000143077.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000044252.19	Osbpl1a	chr18	protein_coding	oxysterol binding protein-like 1A
novel_NIR_9104	chr18	12952718	12965762	-	12952718	12996200	A5SS	ENSMUST00000143077.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000044252.19	Osbpl1a	chr18	protein_coding	oxysterol binding protein-like 1A
novel_NIR_9105	chr18	12952718	12993042	-	12952718	12996200	A5SS	ENSMUST00000143077.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000044252.19	Osbpl1a	chr18	protein_coding	oxysterol binding protein-like 1A
novel_NIR_9106	chr18	12952718	12995160	-	12952718	12996200	A5SS	ENSMUST00000143077.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	ENSMUSG00000044252.19	Osbpl1a	chr18	protein_coding	oxysterol binding protein-like 1A
novel_NIR_9107	chr18	12965878	12974241	-	12921452	12974241	A3SS	ENSMUST00000234427.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	ENSMUSG00000044252.19	Osbpl1a	chr18	protein_coding	oxysterol binding protein-like 1A
novel_NIR_9108	chr18	12965878	12995164	-	12921452	12995164	A3SS	ENSMUST00000121774.8	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	4	0	4	n	0.00	0	1	0	1	n	ENSMUSG00000044252.19	Osbpl1a	chr18	protein_coding	oxysterol binding protein-like 1A
novel_NIR_9109	chr18	12974403	12995160	-	12974403	12987472	5pMXE	ENSMUST00000234118.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000044252.19	Osbpl1a	chr18	protein_coding	oxysterol binding protein-like 1A
novel_NIR_9110	chr18	12974403	12995160	-	12974403	12988282	5pMXE	ENSMUST00000234194.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000044252.19	Osbpl1a	chr18	protein_coding	oxysterol binding protein-like 1A
novel_NIR_9111	chr18	12974403	12995160	-	12974403	12993042	5pMXE	ENSMUST00000124570.3	novel	0.00	0	3	0	3	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.50	1	1	1	1	n	0.00	0	4	0	4	n	0.22	2	7	2	7	y	0.00	0	12	0	12	n	0.00	0	9	0	9	n	ENSMUSG00000044252.19	Osbpl1a	chr18	protein_coding	oxysterol binding protein-like 1A
novel_NIR_9112	chr18	12974403	12995160	-	12974403	12994181	5pMXE	ENSMUST00000235027.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000044252.19	Osbpl1a	chr18	protein_coding	oxysterol binding protein-like 1A
novel_NIR_9113	chr18	12974403	12995160	-	12974403	12996129	A5SS	ENSMUST00000234871.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000044252.19	Osbpl1a	chr18	protein_coding	oxysterol binding protein-like 1A
novel_NIR_9114	chr18	12974403	12995160	-	12974403	12996200	A5SS	ENSMUST00000117361.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000044252.19	Osbpl1a	chr18	protein_coding	oxysterol binding protein-like 1A
novel_NIR_9115	chr18	12974403	12995160	-	12974403	13002094	A5SS	ENSMUST00000155650.3	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	5	0	5	n	0.00	0	3	0	3	n	ENSMUSG00000044252.19	Osbpl1a	chr18	protein_coding	oxysterol binding protein-like 1A
novel_NIR_9116	chr18	12974403	12995160	-	12974403	13004135	A5SS	ENSMUST00000074352.11	novel	0.00	0	9	0	9	n	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.25	2	6	2	6	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	ENSMUSG00000044252.19	Osbpl1a	chr18	protein_coding	oxysterol binding protein-like 1A
novel_NIR_9117	chr18	12974403	12995906	-	12974403	12987472	5pMXE	ENSMUST00000234118.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000044252.19	Osbpl1a	chr18	protein_coding	oxysterol binding protein-like 1A
novel_NIR_9118	chr18	12974403	12995906	-	12974403	12988282	5pMXE	ENSMUST00000234194.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000044252.19	Osbpl1a	chr18	protein_coding	oxysterol binding protein-like 1A
novel_NIR_9119	chr18	12974403	12995906	-	12974403	12993042	5pMXE	ENSMUST00000124570.3	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.10	1	9	1	9	n	ENSMUSG00000044252.19	Osbpl1a	chr18	protein_coding	oxysterol binding protein-like 1A
novel_NIR_9120	chr18	12974403	12995906	-	12974403	12994181	5pMXE	ENSMUST00000235027.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	ENSMUSG00000044252.19	Osbpl1a	chr18	protein_coding	oxysterol binding protein-like 1A
novel_NIR_9121	chr18	12974403	12995906	-	12974403	12996129	A5SS	ENSMUST00000234871.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	ENSMUSG00000044252.19	Osbpl1a	chr18	protein_coding	oxysterol binding protein-like 1A
novel_NIR_9122	chr18	12974403	12995906	-	12974403	12996200	A5SS	ENSMUST00000117361.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000044252.19	Osbpl1a	chr18	protein_coding	oxysterol binding protein-like 1A
novel_NIR_9123	chr18	12974403	12995906	-	12974403	13002094	A5SS	ENSMUST00000155650.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.25	1	3	1	3	n	ENSMUSG00000044252.19	Osbpl1a	chr18	protein_coding	oxysterol binding protein-like 1A
novel_NIR_9124	chr18	12974403	12995906	-	12974403	13004135	A5SS	ENSMUST00000074352.11	novel	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.67	2	1	2	1	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.14	1	6	1	6	n	ENSMUSG00000044252.19	Osbpl1a	chr18	protein_coding	oxysterol binding protein-like 1A
novel_NIR_9125	chr18	13016449	13025224	-	13015334	13025224	A3SS	ENSMUST00000074352.11	novel	0.00	0	9	0	9	n	0.40	2	3	2	3	y	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.10	1	9	1	9	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	ENSMUSG00000044252.19	Osbpl1a	chr18	protein_coding	oxysterol binding protein-like 1A
novel_NIR_9126	chr18	13025346	13031254	-	13025346	13031260	A5SS	ENSMUST00000074352.11	novel	0.22	2	7	2	7	y	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	ENSMUSG00000044252.19	Osbpl1a	chr18	protein_coding	oxysterol binding protein-like 1A
novel_NIR_9127	chr18	13121599	13122802	+	13121442	13122802	A5SS	ENSMUST00000025290.7	novel	0.08	1	11	1	11	n	0.00	0	7	0	7	n	0.19	3	13	3	13	y	0.00	0	14	0	14	n	0.20	2	8	2	8	y	0.08	1	11	1	11	n	0.00	0	16	0	16	n	0.00	0	19	0	19	n	0.00	0	6	0	6	n	0.11	1	8	1	8	n	0.00	0	7	0	7	n	0.11	2	16	2	16	n	ENSMUSG00000024423.7	Impact	chr18	protein_coding	impact, RWD domain protein
novel_NIR_9128	chr18	14774180	14779839	-	14774180	14788084	A5SS	ENSMUST00000040964.13	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	3	3	3	3	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000037013.18	Ss18	chr18	protein_coding	SS18, nBAF chromatin remodeling complex subunit
novel_NIR_9129	chr18	14992333	15075540	+	14992333	15031021	3pMXE	ENSMUST00000234789.2	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.25	2	6	2	6	y	ENSMUSG00000054321.8	Taf4b	chr18	protein_coding	TATA-box binding protein associated factor 4b
novel_NIR_9130	chr18	20356359	20397342	+	20380544	20397342	5pMXE	ENSMUST00000054128.7	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	10	0	10	0	y	ENSMUSG00000034774.7	Dsg1c	chr18	protein_coding	desmoglein 1 gamma
novel_NIR_9131	chr18	20999218	21000817	-	20999263	21000817	A3SS	ENSMUST00000225661.3	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.60	3	2	3	2	y	0.60	3	2	3	2	y	0.00	0	7	0	7	n	0.67	2	1	2	1	y	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.40	2	3	2	3	y	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.82	9	2	9	2	y	ENSMUSG00000033382.16	Trappc8	chr18	protein_coding	trafficking protein particle complex 8
novel_NIR_9132	chr18	20999260	21000817	-	20999263	21000817	A3SS	ENSMUST00000225661.3	novel	0.80	16	4	16	4	y	1.00	11	0	11	0	y	0.92	23	2	23	2	y	0.92	23	2	23	2	y	0.77	24	7	24	7	y	0.90	9	1	9	1	y	0.74	14	5	14	5	y	0.86	24	4	24	4	y	0.77	10	3	10	3	y	1.00	32	0	32	0	y	0.96	27	1	27	1	y	0.94	34	2	34	2	y	ENSMUSG00000033382.16	Trappc8	chr18	protein_coding	trafficking protein particle complex 8
novel_NIR_9133	chr18	20999263	21000874	-	20999263	21000817	A5SS	ENSMUST00000225661.3	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.42	5	7	5	7	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.40	2	3	2	3	y	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.50	2	2	2	2	y	ENSMUSG00000033382.16	Trappc8	chr18	protein_coding	trafficking protein particle complex 8
novel_NIR_9134	chr18	21157573;21158572	21158469;21159143	+	21157573	21159143	cassetteExon	ENSMUST00000234107.2	novel	0.00	0.0	10	0;0	10	n	0.10	1.5	13	1;2	13	n	0.05	1.5	30	0;3	30	n	0.03	0.5	14	0;1	14	n	0.15	4.0	23	2;6	23	y	0.00	0.0	23	0;0	23	n	0.03	1.0	29	0;2	29	n	0.09	2.0	20	1;3	20	n	0.08	1.5	17	1;2	17	n	0.02	0.5	20	1;0	20	n	0.03	0.5	19	0;1	19	n	0.04	1.0	23	0;2	23	n	ENSMUSG00000024317.16	Rnf138	chr18	protein_coding	ring finger protein 138
novel_NIR_9135	chr18	21158572	21159143	+	21154056	21159143	A5SS	ENSMUST00000072847.12	novel	0.00	0	26	0	26	n	0.11	2	16	2	16	n	0.09	3	31	3	31	n	0.08	1	12	1	12	n	0.15	6	34	6	34	y	0.00	0	12	0	12	n	0.07	2	26	2	26	n	0.27	3	8	3	8	y	0.07	2	25	2	25	n	0.00	0	29	0	29	n	0.03	1	35	1	35	n	0.07	2	26	2	26	n	ENSMUSG00000024317.16	Rnf138	chr18	protein_coding	ring finger protein 138
novel_NIR_9136	chr18	24122227	24123235	+	24122788	24123235	5pMXE	ENSMUST00000074941.8	novel	0.18	2	9	2	9	y	0.33	3	6	3	6	y	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.37	7	12	7	12	y	0.00	0	3	0	3	n	0.09	1	10	1	10	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.16	3	16	3	16	y	0.25	1	3	1	3	n	0.60	9	6	9	6	y	ENSMUSG00000063281.10	Zfp35	chr18	protein_coding	zinc finger protein 35
novel_NIR_9137	chr18	24153554	24153769	-	24151225	24153769	A3SS	ENSMUST00000066497.12	novel	0.00	0	16	0	16	n	0.12	1	7	1	7	n	0.12	3	23	3	23	n	0.17	1	5	1	5	n	0.17	2	10	2	10	y	0.00	0	9	0	9	n	0.17	2	10	2	10	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.00	0	1	0	1	n	0.12	1	7	1	7	n	ENSMUSG00000051469.15	Zfp24	chr18	protein_coding	zinc finger protein 24
novel_NIR_9138	chr18	24604037	24606007	+	24604037	24608582	A3SS	ENSMUST00000234303.2	novel	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.86	6	1	6	1	y	1.00	1	0	1	0	n	0.83	5	1	5	1	y	-	-	-	-	-	-	0.50	2	2	2	2	y	0.83	5	1	5	1	y	0.50	4	4	4	4	y	0.50	3	3	3	3	y	ENSMUSG00000024273.9	2700062C07Rik	chr18	protein_coding	RIKEN cDNA 2700062C07 gene
novel_NIR_9139	chr18	24604037	24606007	+	24604037;24604141	24604119;24606007	ES	ENSMUST00000234955.2	novel	0.20	5	20.0	5	24;16	y	0.04	1	22.0	1	28;16	n	0.05	1	19.5	1	22;17	n	0.04	1	27.0	1	30;24	n	0.14	6	37.5	6	43;32	n	0.07	1	13.5	1	15;12	n	0.14	5	29.5	5	33;26	n	0.00	0	7.5	0	6;9	n	0.11	2	17.0	2	18;16	n	0.14	5	29.5	5	29;30	n	0.15	4	23.0	4	25;21	y	0.09	3	30.5	3	39;22	n	ENSMUSG00000024273.9	2700062C07Rik	chr18	protein_coding	RIKEN cDNA 2700062C07 gene
novel_NIR_9140	chr18	24604037	24606007	+	24604037;24604203	24604119;24606007	ES	ENSMUST00000235029.2	novel	0.29	5	12.0	5	24;0	y	0.07	1	14.0	1	28;0	n	0.08	1	11.0	1	22;0	n	0.06	1	15.5	1	30;1	n	0.22	6	21.5	6	43;0	y	0.12	1	7.5	1	15;0	n	0.23	5	16.5	5	33;0	y	0.00	0	3.0	0	6;0	n	0.18	2	9.0	2	18;0	y	0.26	5	14.5	5	29;0	y	0.24	4	12.5	4	25;0	y	0.13	3	19.5	3	39;0	n	ENSMUSG00000024273.9	2700062C07Rik	chr18	protein_coding	RIKEN cDNA 2700062C07 gene
novel_NIR_9141	chr18	24604037	24606007	+	24604141	24606007	A5SS	ENSMUST00000234559.2	novel	0.24	5	16	5	16	y	0.06	1	16	1	16	n	0.06	1	17	1	17	n	0.04	1	24	1	24	n	0.16	6	32	6	32	y	0.08	1	12	1	12	n	0.16	5	26	5	26	y	0.00	0	9	0	9	n	0.11	2	16	2	16	n	0.14	5	30	5	30	n	0.16	4	21	4	21	y	0.12	3	22	3	22	n	ENSMUSG00000024273.9	2700062C07Rik	chr18	protein_coding	RIKEN cDNA 2700062C07 gene
novel_NIR_9142	chr18	24604141	24608582	+	24604037	24608582	A5SS	ENSMUST00000234303.2	novel	1.00	1	0	1	0	n	1.00	7	0	7	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	0.86	6	1	6	1	y	1.00	1	0	1	0	n	0.80	4	1	4	1	y	-	-	-	-	-	-	0.50	2	2	2	2	y	0.75	3	1	3	1	y	0.60	6	4	6	4	y	0.79	11	3	11	3	y	ENSMUSG00000024273.9	2700062C07Rik	chr18	protein_coding	RIKEN cDNA 2700062C07 gene
novel_NIR_9143	chr18	24604141	24608582	+	24604141	24606007	3pMXE	ENSMUST00000234955.2	novel	0.06	1	16	1	16	n	0.30	7	16	7	16	y	0.15	3	17	3	17	y	0.14	4	24	4	24	n	0.16	6	32	6	32	y	0.08	1	12	1	12	n	0.13	4	26	4	26	n	0.00	0	9	0	9	n	0.11	2	16	2	16	n	0.09	3	30	3	30	n	0.22	6	21	6	21	y	0.33	11	22	11	22	y	ENSMUSG00000024273.9	2700062C07Rik	chr18	protein_coding	RIKEN cDNA 2700062C07 gene
novel_NIR_9144	chr18	24604141	24608582	+	24604141;24606206	24606007;24608582	ES	ENSMUST00000234559.2	novel	0.04	1	21.5	1	16;27	n	0.25	7	20.5	7	16;25	y	0.11	3	24.5	3	17;32	n	0.13	4	26.5	4	24;29	n	0.14	6	37.5	6	32;43	n	0.08	1	11.5	1	12;11	n	0.11	4	31.5	4	26;37	n	0.00	0	14.5	0	9;20	n	0.07	2	25.5	2	16;35	n	0.08	3	34.0	3	30;38	n	0.21	6	22.5	6	21;24	y	0.29	11	27.5	11	22;33	y	ENSMUSG00000024273.9	2700062C07Rik	chr18	protein_coding	RIKEN cDNA 2700062C07 gene
novel_NIR_9145	chr18	24604141	24608582	+	24606206	24608582	A5SS&ES	ENSMUST00000235029.2	novel	0.04	1	27	1	27	n	0.22	7	25	7	25	y	0.09	3	32	3	32	n	0.12	4	29	4	29	n	0.12	6	43	6	43	n	0.08	1	11	1	11	n	0.10	4	37	4	37	n	0.00	0	20	0	20	n	0.05	2	35	2	35	n	0.07	3	38	3	38	n	0.20	6	24	6	24	y	0.25	11	33	11	33	y	ENSMUSG00000024273.9	2700062C07Rik	chr18	protein_coding	RIKEN cDNA 2700062C07 gene
novel_NIR_9146	chr18	25253368	25257425	+	25253368	25258800	A3SS	ENSMUST00000037097.9	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000034295.11	Fhod3	chr18	protein_coding	formin homology 2 domain containing 3
novel_NIR_9147	chr18	25282050	25282171	-	25274694	25282171	A3SS	ENSMUST00000148255.8	novel	0.09	2	20	2	20	n	0.00	0	14	0	14	n	0.16	3	16	3	16	y	0.00	0	24	0	24	n	0.00	0	22	0	22	n	0.00	0	13	0	13	n	0.00	0	30	0	30	n	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.04	2	47	2	47	n	0.00	0	18	0	18	n	0.04	2	45	2	45	n	ENSMUSG00000024269.12	Tpgs2	chr18	protein_coding	tubulin polyglutamylase complex subunit 2
novel_NIR_9148	chr18	25620022	25620297	-	25620022	25624138	A5SS	ENSMUST00000115816.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024268.17	Celf4	chr18	protein_coding	CUGBP, Elav-like family member 4
novel_NIR_9149	chr18	25620022	25620297	-	25620022	25624198	A5SS	ENSMUST00000223704.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024268.17	Celf4	chr18	protein_coding	CUGBP, Elav-like family member 4
novel_NIR_9150	chr18	25620022	25620297	-	25620022	25629279	A5SS	ENSMUST00000224553.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024268.17	Celf4	chr18	protein_coding	CUGBP, Elav-like family member 4
novel_NIR_9151	chr18	30401546	30404027	+	30400324	30404027	A5SS	ENSMUST00000234467.2	novel	0.40	2	3	2	3	y	0.75	6	2	6	2	y	1.00	3	0	3	0	y	0.00	0	3	0	3	n	0.86	12	2	12	2	y	0.50	1	1	1	1	n	0.75	9	3	9	3	y	-	-	-	-	-	-	-	-	-	-	-	-	0.50	3	3	3	3	y	0.00	0	1	0	1	n	0.84	16	3	16	3	y	ENSMUSG00000117465.2	Gm49980	chr18	lncRNA	predicted gene, 49980
novel_NIR_9152	chr18	31768383	31769035	+	31767542	31769035	A5SS	ENSMUST00000234760.2	novel	0.00	0	10	0	10	n	0.12	1	7	1	7	n	0.12	1	7	1	7	n	0.12	2	14	2	14	n	0.17	2	10	2	10	y	0.00	0	9	0	9	n	0.23	3	10	3	10	y	0.35	6	11	6	11	y	0.09	1	10	1	10	n	0.08	1	11	1	11	n	0.14	1	6	1	6	n	0.00	0	12	0	12	n	ENSMUSG00000024260.15	Sap130	chr18	protein_coding	Sin3A associated protein
novel_NIR_9153	chr18	31768383	31769035	+	31768184	31769035	A5SS	ENSMUST00000234846.2	novel	0.00	0	2	0	2	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.67	2	1	2	1	y	0.67	2	1	2	1	y	-	-	-	-	-	-	0.75	3	1	3	1	y	0.86	6	1	6	1	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000024260.15	Sap130	chr18	protein_coding	Sin3A associated protein
novel_NIR_9154	chr18	31768383	31769035	+	31768606	31769035	A5SS	ENSMUST00000234461.2	novel	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.25	1	3	1	3	n	0.67	2	1	2	1	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000024260.15	Sap130	chr18	protein_coding	Sin3A associated protein
novel_NIR_9155	chr18	31893247	31904723	+	31893247;31894943	31894833;31904723	ES	ENSMUST00000234500.2	novel	0.04	2	45.5	2	37;54	n	0.22	7	25.5	7	24;27	y	0.13	11	72.0	11	61;83	n	0.09	6	63.0	6	51;75	n	0.06	4	68.0	4	58;78	n	0.04	1	27.0	1	21;33	n	0.00	0	52.0	0	41;63	n	0.11	4	34.0	4	29;39	n	0.03	1	37.0	1	20;54	n	0.06	5	75.5	5	71;80	n	0.08	3	35.5	3	27;44	n	0.06	4	64.0	4	52;76	n	ENSMUSG00000041915.10	Ammecr1l	chr18	protein_coding	AMME chromosomal region gene 1-like
novel_NIR_9156	chr18	31893247	31904723	+	31894943	31904723	5pMXE	ENSMUST00000234191.2	novel	0.04	2	54	2	54	n	0.21	7	27	7	27	y	0.12	11	83	11	83	n	0.07	6	75	6	75	n	0.05	4	78	4	78	n	0.03	1	33	1	33	n	0.00	0	63	0	63	n	0.09	4	39	4	39	n	0.02	1	54	1	54	n	0.06	5	80	5	80	n	0.06	3	44	3	44	n	0.05	4	76	4	76	n	ENSMUSG00000041915.10	Ammecr1l	chr18	protein_coding	AMME chromosomal region gene 1-like
novel_NIR_9157	chr18	31912006	31912949	+	31912006	31913095	A3SS	ENSMUST00000234191.2	novel	-	-	-	-	-	-	0.00	0	5	0	5	n	0.62	5	3	5	3	y	0.12	1	7	1	7	n	0.06	1	15	1	15	n	0.17	1	5	1	5	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	ENSMUSG00000041915.10	Ammecr1l	chr18	protein_coding	AMME chromosomal region gene 1-like
novel_NIR_9158	chr18	31915466	31918603	-	31915575	31918603	A3SS	ENSMUST00000180550.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000097748.2	Gm26533	chr18	lncRNA	predicted gene, 26533
novel_NIR_9159	chr18	32213038	32216319	+	32213038	32216322	A3SS	ENSMUST00000212280.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024384.5	Iws1	chr18	protein_coding	IWS1, SUPT6 interacting protein
novel_NIR_9160	chr18	32213630	32216322	+	32213038	32216322	A5SS	ENSMUST00000212280.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.43	3	4	3	4	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	ENSMUSG00000024384.5	Iws1	chr18	protein_coding	IWS1, SUPT6 interacting protein
novel_NIR_9161	chr18	32268050	32268914	-	32268031	32268914	A3SS	ENSMUST00000234746.2	novel	0.00	0	25	0	25	n	0.18	7	31	7	31	y	0.00	0	12	0	12	n	0.00	0	28	0	28	n	0.00	0	37	0	37	n	0.00	0	15	0	15	n	0.00	0	24	0	24	n	0.00	0	22	0	22	n	0.00	0	35	0	35	n	0.00	0	30	0	30	n	0.00	0	25	0	25	n	0.00	0	34	0	34	n	ENSMUSG00000024386.10	Proc	chr18	protein_coding	protein C
novel_NIR_9162	chr18	32268060	32268914	-	32268031	32268914	A3SS	ENSMUST00000234746.2	novel	0.00	0	25	0	25	n	0.47	28	31	28	31	y	0.00	0	12	0	12	n	0.36	16	28	16	28	y	0.00	0	37	0	37	n	0.00	0	15	0	15	n	0.00	0	24	0	24	n	0.00	0	22	0	22	n	0.00	0	35	0	35	n	0.00	0	30	0	30	n	0.00	0	25	0	25	n	0.00	0	34	0	34	n	ENSMUSG00000024386.10	Proc	chr18	protein_coding	protein C
novel_NIR_9163	chr18	32268066	32271182	-	32268066	32268535	5pMXE	ENSMUST00000234198.2	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000024386.10	Proc	chr18	protein_coding	protein C
novel_NIR_9164	chr18	32268990	32271001	-	32269000	32271001	A3SS	ENSMUST00000234746.2	novel	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	14	0	14	n	0.33	11	22	11	22	y	0.00	0	12	0	12	n	0.00	0	15	0	15	n	ENSMUSG00000024386.10	Proc	chr18	protein_coding	protein C
novel_NIR_9165	chr18	32269000	32270600	-	32269000	32271001	A5SS	ENSMUST00000234746.2	novel	0.69	11	5	11	5	y	0.56	10	8	10	8	y	0.17	1	5	1	5	n	0.33	4	8	4	8	n	0.68	19	9	19	9	y	0.62	5	3	5	3	y	0.79	22	6	22	6	y	0.40	2	3	2	3	y	0.39	9	14	9	14	y	0.29	9	22	9	22	y	0.54	14	12	14	12	y	0.46	13	15	13	15	y	ENSMUSG00000024386.10	Proc	chr18	protein_coding	protein C
novel_NIR_9166	chr18	32269000	32270600	-	32269004	32270600	A3SS	ENSMUST00000234386.2	novel	0.08	11	123	11	123	n	0.08	10	114	10	114	n	0.01	1	68	1	68	n	0.03	4	154	4	154	n	0.11	19	154	19	154	n	0.09	5	48	5	48	n	0.15	22	121	22	121	y	0.03	2	73	2	73	n	0.07	9	120	9	120	n	0.05	9	173	9	173	n	0.11	14	116	14	116	n	0.07	13	171	13	171	n	ENSMUSG00000024386.10	Proc	chr18	protein_coding	protein C
novel_NIR_9167	chr18	32269000	32272558	-	32269000	32271001	5pMXE	ENSMUST00000234746.2	novel	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.18	2	9	2	9	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	14	0	14	n	0.00	0	22	0	22	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	ENSMUSG00000024386.10	Proc	chr18	protein_coding	protein C
novel_NIR_9168	chr18	32269000	32272563	-	32269000	32271001	5pMXE	ENSMUST00000234746.2	novel	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.17	1	5	1	5	n	0.27	3	8	3	8	y	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.33	3	6	3	6	y	0.25	1	3	1	3	n	0.00	0	14	0	14	n	0.04	1	22	1	22	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	ENSMUSG00000024386.10	Proc	chr18	protein_coding	protein C
novel_NIR_9169	chr18	32269000	32272563	-	32269004	32272563	A3SS	ENSMUST00000171765.2	novel	0.00	0	1	0	1	n	0.00	0	7	0	7	n	1.00	1	0	1	0	n	0.30	3	7	3	7	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.38	3	5	3	5	y	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.10	1	9	1	9	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	ENSMUSG00000024386.10	Proc	chr18	protein_coding	protein C
novel_NIR_9170	chr18	32269004	32270830	-	32269004	32272563	A5SS	ENSMUST00000171765.2	novel	0.80	4	1	4	1	y	0.22	2	7	2	7	y	1.00	2	0	2	0	y	0.36	4	7	4	7	y	0.87	13	2	13	2	y	1.00	2	0	2	0	y	0.55	6	5	6	5	y	0.33	3	6	3	6	y	0.00	0	5	0	5	n	0.40	6	9	6	9	y	0.45	5	6	5	6	y	0.20	1	4	1	4	n	ENSMUSG00000024386.10	Proc	chr18	protein_coding	protein C
novel_NIR_9171	chr18	32269004	32271001	-	32269000	32271001	A3SS	ENSMUST00000234746.2	novel	0.29	2	5	2	5	y	0.56	10	8	10	8	y	0.44	4	5	4	5	y	0.43	6	8	6	8	y	0.55	11	9	11	9	y	0.62	5	3	5	3	y	0.57	8	6	8	6	y	0.79	11	3	11	3	y	0.36	8	14	8	14	y	0.44	17	22	17	22	y	0.59	17	12	17	12	y	0.56	19	15	19	15	y	ENSMUSG00000024386.10	Proc	chr18	protein_coding	protein C
novel_NIR_9172	chr18	32269004	32271001	-	32269004	32272563	A5SS	ENSMUST00000171765.2	novel	0.67	2	1	2	1	y	0.59	10	7	10	7	y	1.00	4	0	4	0	y	0.46	6	7	6	7	y	0.85	11	2	11	2	y	1.00	5	0	5	0	y	0.62	8	5	8	5	n	0.65	11	6	11	6	y	0.62	8	5	8	5	n	0.65	17	9	17	9	y	0.74	17	6	17	6	y	0.83	19	4	19	4	y	ENSMUSG00000024386.10	Proc	chr18	protein_coding	protein C
novel_NIR_9173	chr18	32269004	32271182	-	32269000	32271182	A3SS	ENSMUST00000234651.2	novel	0.37	279	480	279	480	y	0.39	309	493	309	493	y	0.37	172	295	172	295	y	0.38	389	645	389	645	y	0.36	332	578	332	578	y	0.34	107	206	107	206	y	0.40	394	592	394	592	y	0.32	152	326	152	326	y	0.38	318	516	318	516	y	0.39	496	790	496	790	y	0.38	358	585	358	585	y	0.34	381	724	381	724	y	ENSMUSG00000024386.10	Proc	chr18	protein_coding	protein C
novel_NIR_9174	chr18	32269004	32271182	-	32269004	32272563	A5SS	ENSMUST00000171765.2	novel	1.00	279	1	279	1	y	0.98	309	7	309	7	y	1.00	172	0	172	0	y	0.98	389	7	389	7	y	0.99	332	2	332	2	y	1.00	107	0	107	0	y	0.99	394	5	394	5	n	0.96	152	6	152	6	y	0.98	318	5	318	5	n	0.98	496	9	496	9	y	0.98	358	6	358	6	y	0.99	381	4	381	4	y	ENSMUSG00000024386.10	Proc	chr18	protein_coding	protein C
novel_NIR_9175	chr18	32269004	32271182	-	32269004;32270663	32270600;32271182	ES	ENSMUST00000234386.2	novel	0.74	279	97.5	279	123;72	y	0.77	309	90.5	309	114;67	y	0.76	172	53.0	172	68;38	y	0.77	389	116.5	389	154;79	y	0.74	332	119.0	332	154;84	y	0.74	107	38.0	107	48;28	y	0.78	394	109.5	394	121;98	y	0.75	152	52.0	152	73;31	y	0.76	318	99.0	318	120;78	y	0.79	496	131.0	496	173;89	y	0.79	358	93.0	358	116;70	y	0.75	381	127.5	381	171;84	y	ENSMUSG00000024386.10	Proc	chr18	protein_coding	protein C
novel_NIR_9176	chr18	32269004	32271365	-	32269004	32272563	A5SS	ENSMUST00000171765.2	novel	0.75	3	1	3	1	y	0.12	1	7	1	7	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.18	2	9	2	9	y	0.00	0	6	0	6	n	0.00	0	4	0	4	n	ENSMUSG00000024386.10	Proc	chr18	protein_coding	protein C
novel_NIR_9177	chr18	32269004;32271386	32271001;32272563	-	32269004	32272563	cassetteExon	ENSMUST00000171765.2	novel	0.50	1.0	1	2;0	1	n	0.42	5.0	7	10;0	7	n	1.00	2.0	0	4;0	0	n	0.30	3.0	7	6;0	7	n	0.73	5.5	2	11;0	2	n	1.00	2.5	0	5;0	0	n	0.50	5.0	5	8;2	5	y	0.48	5.5	6	11;0	6	n	0.47	4.5	5	8;1	5	n	0.49	8.5	9	17;0	9	n	0.59	8.5	6	17;0	6	n	0.70	9.5	4	19;0	4	n	ENSMUSG00000024386.10	Proc	chr18	protein_coding	protein C
novel_NIR_9178	chr18	32269004;32271386	32271182;32272563	-	32269004	32272563	cassetteExon	ENSMUST00000171765.2	novel	0.99	139.5	1	279;0	1	n	0.96	154.5	7	309;0	7	n	1.00	86.0	0	172;0	0	n	0.97	194.5	7	389;0	7	n	0.99	166.0	2	332;0	2	n	1.00	53.5	0	107;0	0	n	0.98	198.0	5	394;2	5	y	0.93	76.0	6	152;0	6	n	0.97	159.5	5	318;1	5	n	0.96	248.0	9	496;0	9	n	0.97	179.0	6	358;0	6	n	0.98	190.5	4	381;0	4	n	ENSMUSG00000024386.10	Proc	chr18	protein_coding	protein C
novel_NIR_9179	chr18	32270867	32271182	-	32271000	32271182	A3SS	ENSMUST00000234657.2	novel	0.00	0	21	0	21	n	0.22	4	14	4	14	y	0.25	5	15	5	15	y	0.27	3	8	3	8	y	0.29	10	25	10	25	y	0.00	0	8	0	8	n	0.17	5	25	5	25	y	0.00	0	15	0	15	n	0.00	0	4	0	4	n	0.11	2	16	2	16	n	0.11	1	8	1	8	n	0.36	5	9	5	9	y	ENSMUSG00000024386.10	Proc	chr18	protein_coding	protein C
novel_NIR_9180	chr18	32271734	32272563	-	32269004	32272563	A3SS	ENSMUST00000171765.2	novel	0.00	0	1	0	1	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.60	3	2	3	2	y	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	ENSMUSG00000024386.10	Proc	chr18	protein_coding	protein C
novel_NIR_9181	chr18	32353687	32359692	+	32353687	32359605	A3SS	ENSMUST00000096575.5	novel	0.00	0	6	0	6	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000024383.10	Map3k2	chr18	protein_coding	mitogen-activated protein kinase kinase kinase 2
novel_NIR_9182	chr18	32390445	32393607	+	32390445	32397601	A3SS	ENSMUST00000129023.2	novel	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.40	2	3	2	3	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	ENSMUSG00000024382.14	Ercc3	chr18	protein_coding	excision repair cross-complementing rodent repair deficiency, complementation group 3
novel_NIR_9183	chr18	32492485	32504483	-	32492488	32504483	A3SS	ENSMUST00000234930.2	novel	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.18	2	9	2	9	y	0.40	2	3	2	3	y	0.27	4	11	4	11	y	0.00	0	1	0	1	n	0.09	1	10	1	10	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.14	1	6	1	6	n	ENSMUSG00000097413.3	A830052D11Rik	chr18	lncRNA	RIKEN cDNA A830052D11 gene
novel_NIR_9184	chr18	32555013;32556339	32556295;32557873	+	32555013	32557873	cassetteExon	ENSMUST00000234857.2	novel	0.00	0.0	39	0;0	39	n	0.00	0.0	45	0;0	45	n	0.00	0.0	28	0;0	28	n	0.00	0.0	36	0;0	36	n	0.00	0.0	42	0;0	42	n	0.00	0.0	15	0;0	15	n	0.52	52.5	48	45;60	48	y	0.00	0.0	26	0;0	26	n	0.00	0.0	29	0;0	29	n	0.00	0.0	32	0;0	32	n	0.00	0.0	35	0;0	35	n	0.00	0.0	38	0;0	38	n	ENSMUSG00000024381.17	Bin1	chr18	protein_coding	bridging integrator 1
novel_NIR_9185	chr18	3267732	3267989	-	3267732	3273422	A5SS	ENSMUST00000140332.8	novel	0.19	3	13	3	13	n	0.33	3	6	3	6	y	0.62	13	8	13	8	n	0.00	0	9	0	9	n	0.00	0	24	0	24	n	0.00	0	9	0	9	n	0.18	3	14	3	14	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	17	0	17	n	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
novel_NIR_9186	chr18	3267732	3267989	-	3267732	3273422	A5SS	ENSMUST00000151311.8	novel	0.19	3	13	3	13	n	0.33	3	6	3	6	n	0.62	13	8	13	8	y	0.00	0	9	0	9	n	0.00	0	24	0	24	n	0.00	0	9	0	9	n	0.18	3	14	3	14	y	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	17	0	17	n	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
novel_NIR_9187	chr18	3273578	3325361	-	3273578	3281688	5pMXE	ENSMUST00000140332.8	novel	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.00	0	25	0	25	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	17	0	17	n	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
novel_NIR_9188	chr18	3273578	3325361	-	3273578	3337380	A5SS	ENSMUST00000140912.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
novel_NIR_9189	chr18	3273578	3325361	-	3318989	3325361	3pMXE	ENSMUST00000132334.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
novel_NIR_9190	chr18	3276775	3281688	-	3276775	3280949	5pMXE	ENSMUST00000049942.13	novel	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.20	2	8	2	8	y	0.25	1	3	1	3	n	-	-	-	-	-	-	0.20	1	4	1	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.11	1	8	1	8	n	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
novel_NIR_9191	chr18	3276775	3295040	-	3273578	3295040	A3SS	ENSMUST00000154470.8	novel	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.29	2	5	2	5	y	0.00	0	5	0	5	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
novel_NIR_9192	chr18	3276775	3295040	-	3276729	3295040	A3SS	ENSMUST00000154135.8	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
novel_NIR_9193	chr18	3276775	3295040	-	3276775	3280949	5pMXE	ENSMUST00000049942.13	novel	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	8	0	8	n	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
novel_NIR_9194	chr18	3276775	3295040	-	3288092	3295040	A3SS&ES	ENSMUST00000151311.8	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.25	2	6	2	6	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
novel_NIR_9195	chr18	32998971	32999244	+	32998971	32999241	A3SS	ENSMUST00000166214.9	novel	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.22	2	7	2	7	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	1.00	1	0	1	0	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.30	3	7	3	7	y	0.00	0	9	0	9	n	ENSMUSG00000038299.17	Wdr36	chr18	protein_coding	WD repeat domain 36
novel_NIR_9196	chr18	34412405	34429084	+	34412405;34415062	34415060;34429084	ES	ENSMUST00000115781.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0.0	3	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000005871.16	Apc	chr18	protein_coding	APC, WNT signaling pathway regulator
novel_NIR_9197	chr18	34412405	34429084	+	34412405;34422995	34422891;34429084	ES	ENSMUST00000079362.13	novel	0.00	0	5.0	0	5;5	n	0.00	0	0.5	0	0;1	n	0.00	0	4.5	0	5;4	n	0.00	0	7.5	0	8;7	n	0.40	3	4.5	3	5;4	y	0.00	0	1.5	0	3;0	n	0.00	0	3.0	0	1;5	n	0.14	1	6.0	1	7;5	n	0.33	1	2.0	1	1;3	n	0.00	0	5.5	0	2;9	n	0.00	0	5.0	0	7;3	n	0.00	0	7.0	0	9;5	n	ENSMUSG00000005871.16	Apc	chr18	protein_coding	APC, WNT signaling pathway regulator
novel_NIR_9198	chr18	34412405	34429084	+	34422995	34429084	A5SS&ES	ENSMUST00000171187.8	novel	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.43	3	4	3	4	y	-	-	-	-	-	-	0.00	0	5	0	5	n	0.17	1	5	1	5	n	0.25	1	3	1	3	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000005871.16	Apc	chr18	protein_coding	APC, WNT signaling pathway regulator
novel_NIR_9199	chr18	34429182	34430756	+	34429182	34431476	A3SS	ENSMUST00000171187.8	novel	0.00	0	2	0	2	n	0.38	3	5	3	5	y	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.14	1	6	1	6	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.17	1	5	1	5	n	ENSMUSG00000005871.16	Apc	chr18	protein_coding	APC, WNT signaling pathway regulator
novel_NIR_9200	chr18	34429182	34431779	+	34429182	34431476	A3SS	ENSMUST00000171187.8	novel	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.17	1	5	1	5	n	0.11	1	8	1	8	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.50	4	4	4	4	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	ENSMUSG00000005871.16	Apc	chr18	protein_coding	APC, WNT signaling pathway regulator
novel_NIR_9201	chr18	34433114	34434315	+	34433114	34437636	A3SS	ENSMUST00000171187.8	novel	-	-	-	-	-	-	0.33	1	2	1	2	n	0.38	5	8	5	8	y	0.33	3	6	3	6	y	0.13	2	13	2	13	n	0.00	0	4	0	4	n	0.07	1	14	1	14	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.10	1	9	1	9	n	0.67	4	2	4	2	y	0.15	2	11	2	11	y	ENSMUSG00000005871.16	Apc	chr18	protein_coding	APC, WNT signaling pathway regulator
novel_NIR_9202	chr18	34433114	34434315	+	34433114	34443746	A3SS	ENSMUST00000165590.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	2	0	2	0	y	ENSMUSG00000005871.16	Apc	chr18	protein_coding	APC, WNT signaling pathway regulator
novel_NIR_9203	chr18	34443960	34451469	+	34443960	34445058	3pMXE	ENSMUST00000171187.8	novel	0.00	0	9	0	9	n	0.50	2	2	2	2	y	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.00	0	13	0	13	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	ENSMUSG00000005871.16	Apc	chr18	protein_coding	APC, WNT signaling pathway regulator
novel_NIR_9204	chr18	34464563	34464803	+	34464164	34464803	A5SS	ENSMUST00000126518.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	18	0	18	0	y	0.67	2	1	2	1	y	0.89	8	1	8	1	y	0.80	4	1	4	1	y	1.00	5	0	5	0	y	0.67	2	1	2	1	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	2	0	2	0	y	0.25	1	3	1	3	n	ENSMUSG00000014504.17	Srp19	chr18	protein_coding	signal recognition particle 19
novel_NIR_9205	chr18	34464563	34464803	+	34464312	34464803	A5SS	ENSMUST00000140279.8	novel	0.00	0	54	0	54	n	0.00	0	60	0	60	n	0.15	18	104	18	104	y	0.02	2	83	2	83	n	0.09	8	78	8	78	n	0.04	4	87	4	87	n	0.06	5	82	5	82	n	0.03	2	59	2	59	n	0.02	1	48	1	48	n	0.04	3	80	3	80	n	0.03	2	66	2	66	n	0.02	1	57	1	57	n	ENSMUSG00000014504.17	Srp19	chr18	protein_coding	signal recognition particle 19
novel_NIR_9206	chr18	34571885	34575473	+	34571885	34574643	3pMXE	ENSMUST00000166156.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000014503.16	Pkd2l2	chr18	protein_coding	polycystic kidney disease 2-like 2
novel_NIR_9207	chr18	34571885	34575473	+	34571885	34575309	A3SS	ENSMUST00000014647.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000014503.16	Pkd2l2	chr18	protein_coding	polycystic kidney disease 2-like 2
novel_NIR_9208	chr18	34578668	34584261	-	34583946	34584261	3pMXE	ENSMUST00000237302.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.50	2	2	2	2	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000036501.8	Fam13b	chr18	protein_coding	family with sequence similarity 13, member B
novel_NIR_9209	chr18	34596062	34597291	-	34596062	34597216	A5SS	ENSMUST00000238059.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	3	0	3	n	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000036501.8	Fam13b	chr18	protein_coding	family with sequence similarity 13, member B
novel_NIR_9210	chr18	34596062	34597291	-	34596062	34597536	A5SS	ENSMUST00000235529.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036501.8	Fam13b	chr18	protein_coding	family with sequence similarity 13, member B
novel_NIR_9211	chr18	34597613	34598209	-	34597389	34598209	A3SS	ENSMUST00000238059.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.33	1	2	1	2	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.33	1	2	1	2	n	ENSMUSG00000036501.8	Fam13b	chr18	protein_coding	family with sequence similarity 13, member B
novel_NIR_9212	chr18	34620192	34624070	-	34620192	34627210	A5SS	ENSMUST00000040506.8	novel	0.10	4	38	4	38	n	0.07	2	28	2	28	n	0.06	3	47	3	47	n	0.17	6	30	6	30	y	0.07	4	50	4	50	n	0.11	4	33	4	33	n	0.04	2	51	2	51	n	0.18	8	36	8	36	y	0.00	0	20	0	20	n	0.09	3	29	3	29	n	0.00	0	20	0	20	n	0.08	5	54	5	54	n	ENSMUSG00000036501.8	Fam13b	chr18	protein_coding	family with sequence similarity 13, member B
novel_NIR_9213	chr18	34627746	34630387	-	34627829	34630387	A3SS	ENSMUST00000040506.8	novel	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.17	5	24	5	24	y	0.00	0	23	0	23	n	0.00	0	23	0	23	n	0.06	1	17	1	17	n	0.04	1	24	1	24	n	0.00	0	19	0	19	n	0.00	0	10	0	10	n	0.06	1	16	1	16	n	0.09	1	10	1	10	n	0.00	0	22	0	22	n	ENSMUSG00000036501.8	Fam13b	chr18	protein_coding	family with sequence similarity 13, member B
novel_NIR_9214	chr18	34627746;34630599	34630387;34632739	-	34627746	34632739	cassetteExon	ENSMUST00000235499.2	novel	-	-	-	-	-	-	1.00	1.0	0	0;2	0	n	1.00	6.5	0	5;8	0	y	0.00	0.0	1	0;0	1	n	-	-	-	-	-	-	1.00	1.0	0	1;1	0	n	1.00	1.0	0	1;1	0	n	0.00	0.0	1	0;0	1	n	-	-	-	-	-	-	1.00	0.5	0	1;0	0	n	1.00	1.0	0	1;1	0	n	1.00	0.5	0	0;1	0	n	ENSMUSG00000036501.8	Fam13b	chr18	protein_coding	family with sequence similarity 13, member B
novel_NIR_9215	chr18	34630599	34632739	-	34627746	34632739	A3SS	ENSMUST00000235499.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	8	0	8	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000036501.8	Fam13b	chr18	protein_coding	family with sequence similarity 13, member B
novel_NIR_9216	chr18	34630599	34632739	-	34630599;34631212	34631021;34632739	ES	ENSMUST00000040506.8	novel	0.00	0	14.0	0	13;15	n	0.15	2	11.0	2	12;10	y	0.18	8	35.5	8	34;37	y	0.00	0	13.0	0	16;10	n	0.00	0	35.5	0	43;28	n	0.05	1	21.0	1	24;18	n	0.03	1	31.0	1	39;23	n	0.00	0	26.5	0	25;28	n	0.00	0	12.5	0	11;14	n	0.00	0	21.0	0	22;20	n	0.09	1	10.0	1	11;9	n	0.03	1	34.0	1	42;26	n	ENSMUSG00000036501.8	Fam13b	chr18	protein_coding	family with sequence similarity 13, member B
novel_NIR_9217	chr18	34630599	34632739	-	34631212	34632739	A3SS	ENSMUST00000236598.2	novel	0.00	0	15	0	15	n	0.17	2	10	2	10	y	0.18	8	37	8	37	y	0.00	0	10	0	10	n	0.00	0	28	0	28	n	0.05	1	18	1	18	n	0.04	1	23	1	23	n	0.00	0	28	0	28	n	0.00	0	14	0	14	n	0.00	0	20	0	20	n	0.10	1	9	1	9	n	0.04	1	26	1	26	n	ENSMUSG00000036501.8	Fam13b	chr18	protein_coding	family with sequence similarity 13, member B
novel_NIR_9218	chr18	34632905	34656008	-	34632905	34639582	5pMXE	ENSMUST00000040506.8	novel	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	23	0	23	n	0.00	0	10	0	10	n	0.00	0	31	0	31	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.06	1	15	1	15	n	0.24	4	13	4	13	y	0.00	0	22	0	22	n	0.00	0	17	0	17	n	0.00	0	32	0	32	n	ENSMUSG00000036501.8	Fam13b	chr18	protein_coding	family with sequence similarity 13, member B
novel_NIR_9219	chr18	34697349	34700089	-	34695856	34700089	A3SS	ENSMUST00000134875.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035984.15	Nme5	chr18	protein_coding	NME/NM23 family member 5
novel_NIR_9220	chr18	34726113	34728858	-	34726113	34729042	A5SS	ENSMUST00000056932.9	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000049357.12	Brd8dc	chr18	protein_coding	BRD8 domain containing
novel_NIR_9221	chr18	34738741	34738981	-	34738741	34739473	A5SS	ENSMUST00000003876.10	novel	0.15	6	34	6	34	n	0.05	1	19	1	19	n	0.06	2	34	2	34	n	0.00	0	32	0	32	n	0.03	1	32	1	32	n	0.08	1	12	1	12	n	0.03	1	31	1	31	n	0.21	5	19	5	19	n	0.04	1	27	1	27	n	0.15	3	17	3	17	y	0.00	0	18	0	18	n	0.00	0	34	0	34	n	ENSMUSG00000003778.15	Brd8	chr18	protein_coding	bromodomain containing 8
novel_NIR_9222	chr18	34738741	34738981	-	34738741	34739728	A5SS	ENSMUST00000152612.8	novel	0.86	6	1	6	1	n	0.25	1	3	1	3	n	0.14	2	12	2	12	n	0.00	0	5	0	5	n	0.08	1	11	1	11	n	0.33	1	2	1	2	n	0.17	1	5	1	5	n	0.50	5	5	5	5	y	0.33	1	2	1	2	n	0.60	3	2	3	2	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000003778.15	Brd8	chr18	protein_coding	bromodomain containing 8
novel_NIR_9223	chr18	34738741;34739039	34738981;34739473	-	34738741	34739473	cassetteExon	ENSMUST00000003876.10	novel	0.11	4.0	34	6;2	34	n	0.05	1.0	19	1;1	19	n	0.04	1.5	34	2;1	34	n	0.02	0.5	32	0;1	32	n	0.07	2.5	32	1;4	32	n	0.04	0.5	12	1;0	12	n	0.02	0.5	31	1;0	31	n	0.16	3.5	19	5;2	19	y	0.04	1.0	27	1;1	27	n	0.08	1.5	17	3;0	17	n	0.00	0.0	18	0;0	18	n	0.00	0.0	34	0;0	34	n	ENSMUSG00000003778.15	Brd8	chr18	protein_coding	bromodomain containing 8
novel_NIR_9224	chr18	34738741;34739039	34738981;34739728	-	34738741	34739728	cassetteExon	ENSMUST00000152612.8	novel	0.80	4.0	1	6;2	1	y	0.14	0.5	3	1;0	3	n	0.08	1.0	12	2;0	12	n	0.00	0.0	5	0;0	5	n	0.08	1.0	11	1;1	11	n	0.43	1.5	2	1;2	2	n	0.09	0.5	5	1;0	5	n	0.33	2.5	5	5;0	5	n	0.20	0.5	2	1;0	2	n	0.43	1.5	2	3;0	2	n	0.00	0.0	2	0;0	2	n	0.00	0.0	4	0;0	4	n	ENSMUSG00000003778.15	Brd8	chr18	protein_coding	bromodomain containing 8
novel_NIR_9225	chr18	34764349	34767136	-	34764354	34767136	A3SS	ENSMUST00000025228.12	novel	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	15	0	15	n	0.00	0	1	0	1	n	0.25	2	6	2	6	y	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	ENSMUSG00000024370.18	Cdc23	chr18	protein_coding	CDC23 cell division cycle 23
novel_NIR_9226	chr18	34895777	34901221	+	34895777	34901224	A3SS	ENSMUST00000235929.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034300.18	Fam53c	chr18	protein_coding	family with sequence similarity 53, member C
novel_NIR_9227	chr18	34910989	34926057	+	34910378	34926057	A5SS	ENSMUST00000043775.9	novel	0.10	1	9	1	9	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.30	3	7	3	7	y	0.00	0	15	0	15	n	0.00	0	22	0	22	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	ENSMUSG00000038773.12	Kdm3b	chr18	protein_coding	KDM3B lysine (K)-specific demethylase 3B
novel_NIR_9228	chr18	34925553	34926057	+	34910378	34926057	A5SS	ENSMUST00000043775.9	novel	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.14	2	12	2	12	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.00	0	22	0	22	n	0.08	1	12	1	12	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.27	3	8	3	8	y	0.00	0	11	0	11	n	ENSMUSG00000038773.12	Kdm3b	chr18	protein_coding	KDM3B lysine (K)-specific demethylase 3B
novel_NIR_9229	chr18	34946614	34952836	+	34946614	34949337	A3SS&ES	ENSMUST00000224065.2	novel	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000038773.12	Kdm3b	chr18	protein_coding	KDM3B lysine (K)-specific demethylase 3B
novel_NIR_9230	chr18	34946614	34952836	+	34946614	34952834	A3SS	ENSMUST00000043775.9	novel	0.00	0	24	0	24	n	0.20	5	20	5	20	y	0.05	2	41	2	41	n	0.00	0	30	0	30	n	0.03	1	31	1	31	n	0.12	1	7	1	7	n	0.00	0	23	0	23	n	0.00	0	12	0	12	n	0.00	0	21	0	21	n	0.06	2	30	2	30	n	0.00	0	12	0	12	n	0.06	2	31	2	31	n	ENSMUSG00000038773.12	Kdm3b	chr18	protein_coding	KDM3B lysine (K)-specific demethylase 3B
novel_NIR_9231	chr18	35252034	35743924	+	35731896	35743924	5pMXE	ENSMUST00000236868.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	4	0	4	0	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000037058.17	Paip2	chr18	protein_coding	polyadenylate-binding protein-interacting protein 2
novel_NIR_9232	chr18	35252034	35743924	+	35733170	35743924	5pMXE	ENSMUST00000236414.2	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.50	4	4	4	4	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000037058.17	Paip2	chr18	protein_coding	polyadenylate-binding protein-interacting protein 2
novel_NIR_9233	chr18	35322679	35355118	+	35348331	35355118	5pMXE	ENSMUST00000235449.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037815.8	Ctnna1	chr18	protein_coding	catenin (cadherin associated protein), alpha 1
novel_NIR_9234	chr18	35322679	35355118	+	35348464	35355118	5pMXE	ENSMUST00000235269.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037815.8	Ctnna1	chr18	protein_coding	catenin (cadherin associated protein), alpha 1
novel_NIR_9235	chr18	35402763	35403741	-	35402763	35432774	A5SS	ENSMUST00000237253.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000024357.11	Sil1	chr18	protein_coding	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)
novel_NIR_9236	chr18	35402763	35405591	-	35402763	35432774	A5SS	ENSMUST00000237253.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000024357.11	Sil1	chr18	protein_coding	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)
novel_NIR_9237	chr18	35402763	35407797	-	35402763	35432774	A5SS	ENSMUST00000237253.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024357.11	Sil1	chr18	protein_coding	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)
novel_NIR_9238	chr18	35402763	35458337	-	35402763	35432774	5pMXE	ENSMUST00000237253.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024357.11	Sil1	chr18	protein_coding	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)
novel_NIR_9239	chr18	35442268	35450895	-	35411888	35450895	A3SS	ENSMUST00000237309.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	ENSMUSG00000024357.11	Sil1	chr18	protein_coding	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)
novel_NIR_9240	chr18	35481813	35571320	-	35481808	35571320	A3SS	ENSMUST00000235619.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000024357.11	Sil1	chr18	protein_coding	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)
novel_NIR_9241	chr18	35481813	35571320	-	35563360	35571320	3pMXE	ENSMUST00000235524.2	novel	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.83	5	1	5	1	y	-	-	-	-	-	-	0.67	4	2	4	2	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.71	5	2	5	2	y	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000024357.11	Sil1	chr18	protein_coding	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)
novel_NIR_9242	chr18	35571433	35626198	-	35571433	35632632	A5SS	ENSMUST00000237232.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	6	0	6	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	0.00	0	1	0	1	n	1.00	3	0	3	0	y	0.75	3	1	3	1	y	-	-	-	-	-	-	1.00	5	0	5	0	y	ENSMUSG00000024357.11	Sil1	chr18	protein_coding	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)
novel_NIR_9243	chr18	35571433	35626198	-	35571433;35626019	35625912;35626198	ES	ENSMUST00000235691.2	novel	0.20	1	4.0	1	3;5	n	0.29	1	2.5	1	4;1	n	0.71	6	2.5	6	4;1	y	0.33	3	6.0	3	8;4	y	0.00	0	1.5	0	1;2	n	1.00	2	0.0	2	0;0	y	0.50	3	3.0	3	3;3	y	0.00	0	4.0	0	3;5	n	0.86	3	0.5	3	0;1	y	0.75	3	1.0	3	2;0	y	0.00	0	4.0	0	5;3	n	0.53	5	4.5	5	3;6	y	ENSMUSG00000024357.11	Sil1	chr18	protein_coding	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)
novel_NIR_9244	chr18	35752575	35754820	-	35753285	35754820	3pMXE	ENSMUST00000235744.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000024354.14	Slc23a1	chr18	protein_coding	solute carrier family 23 (nucleobase transporters), member 1
novel_NIR_9245	chr18	35753783	35754820	-	35753285	35754820	A3SS	ENSMUST00000235744.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000024354.14	Slc23a1	chr18	protein_coding	solute carrier family 23 (nucleobase transporters), member 1
novel_NIR_9246	chr18	35754331	35754820	-	35753285	35754820	A3SS	ENSMUST00000235744.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000024354.14	Slc23a1	chr18	protein_coding	solute carrier family 23 (nucleobase transporters), member 1
novel_NIR_9247	chr18	35754525	35754820	-	35753285	35754820	A3SS	ENSMUST00000235744.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000024354.14	Slc23a1	chr18	protein_coding	solute carrier family 23 (nucleobase transporters), member 1
novel_NIR_9248	chr18	35754626	35754820	-	35753285	35754820	A3SS	ENSMUST00000235744.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000024354.14	Slc23a1	chr18	protein_coding	solute carrier family 23 (nucleobase transporters), member 1
novel_NIR_9249	chr18	35759511	35760155	-	35759527	35760155	A3SS	ENSMUST00000237305.2	novel	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.14	1	6	1	6	n	0.00	0	10	0	10	n	-	-	-	-	-	-	-	-	-	-	-	-	0.56	5	4	5	4	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.38	3	5	3	5	y	ENSMUSG00000024354.14	Slc23a1	chr18	protein_coding	solute carrier family 23 (nucleobase transporters), member 1
novel_NIR_9250	chr18	35759524	35760155	-	35759527	35760155	A3SS	ENSMUST00000237305.2	novel	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	-	-	-	-	-	-	1.00	6	0	6	0	y	0.56	5	4	5	4	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.83	5	1	5	1	y	0.17	1	5	1	5	n	ENSMUSG00000024354.14	Slc23a1	chr18	protein_coding	solute carrier family 23 (nucleobase transporters), member 1
novel_NIR_9251	chr18	35932925	35933013	+	35932925	35933163	A3SS	ENSMUST00000236484.2	novel	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000091896.9	Ube2d2a	chr18	protein_coding	ubiquitin-conjugating enzyme E2D 2A
novel_NIR_9252	chr18	36413719	36420085	+	36414602	36420085	5pMXE	ENSMUST00000051301.6	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000043991.6	Pura	chr18	protein_coding	purine rich element binding protein A
novel_NIR_9253	chr18	36708222	36711713	+	36708222	36711671	A3SS	ENSMUST00000134146.8	novel	0.00	0	7	0	7	n	0.33	1	2	1	2	n	0.04	1	22	1	22	n	0.06	1	15	1	15	n	0.12	3	22	3	22	n	0.00	0	10	0	10	n	0.06	1	16	1	16	n	0.06	1	16	1	16	n	0.06	1	16	1	16	n	0.27	4	11	4	11	y	0.00	0	6	0	6	n	0.00	0	12	0	12	n	ENSMUSG00000024483.20	Ankhd1	chr18	protein_coding	ankyrin repeat and KH domain containing 1
novel_NIR_9254	chr18	36758320	36759057	+	36758320	36765120	A3SS	ENSMUST00000006205.14	novel	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.00	0	31	0	31	n	0.00	0	19	0	19	n	0.00	0	19	0	19	n	0.09	1	10	1	10	n	0.08	1	12	1	12	n	0.10	2	18	2	18	n	0.15	2	11	2	11	y	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.00	0	19	0	19	n	ENSMUSG00000024483.20	Ankhd1	chr18	protein_coding	ankyrin repeat and KH domain containing 1
novel_NIR_9255	chr18	36788730	36789742	+	36788730	36789772	A3SS	ENSMUST00000116653.3	novel	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.75	3	1	3	1	y	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.50	3	3	3	3	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.56	5	4	5	4	y	0.62	5	3	5	3	y	ENSMUSG00000024483.20	Ankhd1	chr18	protein_coding	ankyrin repeat and KH domain containing 1
novel_NIR_9256	chr18	36797399	36798335	+	36794159	36798335	A5SS	ENSMUST00000140061.8	novel	0.09	6	58	6	58	n	0.00	0	65	0	65	n	0.00	0	61	0	61	n	0.26	12	34	12	34	y	0.11	7	56	7	56	n	0.18	9	40	9	40	y	0.03	2	67	2	67	n	0.00	0	27	0	27	n	0.00	0	37	0	37	n	0.05	3	57	3	57	n	0.10	5	44	5	44	n	0.15	8	46	8	46	y	ENSMUSG00000117942.2	Maskbp3	chr18	protein_coding	multiple ankyrin repeats single KH domain binding protein 3
novel_NIR_9257	chr18	36809530	36809918	-	36809530;36809675	36809670;36809918	ES	ENSMUST00000001415.9	novel	0.00	0	14.5	0	29;0	n	0.00	0	14.5	0	29;0	n	0.15	3	17.5	3	35;0	y	0.17	2	10.0	2	20;0	y	0.15	4	22.0	4	44;0	y	0.10	1	9.0	1	18;0	n	0.00	0	12.5	0	25;0	n	0.00	0	10.5	0	21;0	n	0.00	0	7.5	0	15;0	n	0.06	1	16.5	1	33;0	n	0.00	0	9.0	0	18;0	n	0.21	3	11.0	3	22;0	y	ENSMUSG00000117679.2	Apbb3	chr18	protein_coding	amyloid beta (A4) precursor protein-binding, family B, member 3
novel_NIR_9258	chr18	36812341	36813569	+	36812676	36813569	A5SS	ENSMUST00000186538.7	novel	0.00	0	23	0	23	n	0.00	0	17	0	17	n	0.00	0	25	0	25	n	0.00	0	24	0	24	n	0.00	0	24	0	24	n	0.00	0	20	0	20	n	0.00	0	27	0	27	n	0.00	0	7	0	7	n	0.15	2	11	2	11	y	0.00	0	16	0	16	n	0.00	0	18	0	18	n	0.00	0	27	0	27	n	ENSMUSG00000033272.13	Slc35a4	chr18	protein_coding	solute carrier family 35, member A4
novel_NIR_9259	chr18	36870625	36870783	+	36870625	36870722	A3SS	ENSMUST00000007046.9	novel	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.00	0	38	0	38	n	0.00	0	16	0	16	n	0.00	0	43	0	43	n	0.00	0	31	0	31	n	0.00	0	26	0	26	n	0.07	2	25	2	25	n	0.00	0	20	0	20	n	0.15	2	11	2	11	y	0.00	0	14	0	14	n	0.00	0	20	0	20	n	ENSMUSG00000006850.9	Tmco6	chr18	protein_coding	transmembrane and coiled-coil domains 6
novel_NIR_9260	chr18	36870634	36870722	+	36870632	36870722	A5SS	ENSMUST00000237727.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000006850.9	Tmco6	chr18	protein_coding	transmembrane and coiled-coil domains 6
novel_NIR_9261	chr18	36923373	36923522	+	36919224	36923522	A5SS	ENSMUST00000134122.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	ENSMUSG00000019143.16	Hars2	chr18	protein_coding	histidyl-tRNA synthetase 2
novel_NIR_9262	chr18	37981057	37984604	-	37978544	37984604	A3SS	ENSMUST00000127346.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	11	0	11	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000024456.17	Diaph1	chr18	protein_coding	diaphanous related formin 1
novel_NIR_9263	chr18	38090208	38090660	+	38090208	38090642	A3SS	ENSMUST00000176902.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000044024.17	Rell2	chr18	protein_coding	RELT-like 2
novel_NIR_9264	chr18	38101334	38102408	-	38101334;38101848	38101803;38102408	ES	ENSMUST00000043437.14	novel	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	0.57	2	1.5	2	2;1	y	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	0.00	0	4.5	0	4;5	n	0.00	0	1.0	0	0;2	n	0.00	0	4.0	0	3;5	n	0.00	0	2.0	0	2;2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038524.14	Fchsd1	chr18	protein_coding	FCH and double SH3 domains 1
novel_NIR_9265	chr18	38101334	38102408	-	38101848	38102408	A3SS&ES	ENSMUST00000164222.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038524.14	Fchsd1	chr18	protein_coding	FCH and double SH3 domains 1
novel_NIR_9266	chr18	38122552	38122739	-	38122598	38122739	A3SS	ENSMUST00000237272.2	novel	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.40	2	3	2	3	y	0.00	0	3	0	3	n	ENSMUSG00000024451.10	Arap3	chr18	protein_coding	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3
novel_NIR_9267	chr18	38124786	38129262	-	38124783	38129262	A3SS	ENSMUST00000237272.2	novel	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.67	2	1	2	1	y	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	ENSMUSG00000024451.10	Arap3	chr18	protein_coding	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3
novel_NIR_9268	chr18	38336659	38342735	-	38336659	38336823	5pMXE	ENSMUST00000194312.2	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	ENSMUSG00000051375.16	Pcdh1	chr18	protein_coding	protocadherin 1
novel_NIR_9269	chr18	38336659	38342735	-	38336659	38342612	A5SS	ENSMUST00000057185.13	novel	0.75	3	1	3	1	y	0.50	1	1	1	1	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.62	5	3	5	3	y	0.25	1	3	1	3	n	1.00	4	0	4	0	y	0.50	4	4	4	4	y	0.25	1	3	1	3	n	ENSMUSG00000051375.16	Pcdh1	chr18	protein_coding	protocadherin 1
novel_NIR_9270	chr18	38336659	38342735	-	38336659	38343337	A5SS	ENSMUST00000193828.2	novel	0.75	3	1	3	1	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.71	5	2	5	2	y	0.50	1	1	1	1	n	1.00	4	0	4	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	ENSMUSG00000051375.16	Pcdh1	chr18	protein_coding	protocadherin 1
novel_NIR_9271	chr18	38336659	38342735	-	38336659	38344842	A5SS	ENSMUST00000160721.8	novel	0.17	3	15	3	15	y	0.05	1	19	1	19	n	0.00	0	56	0	56	n	0.00	0	48	0	48	n	0.02	1	60	1	60	n	0.00	0	37	0	37	n	0.00	0	31	0	31	n	0.11	5	40	5	40	n	0.03	1	33	1	33	n	0.10	4	37	4	37	n	0.17	4	19	4	19	y	0.02	1	53	1	53	n	ENSMUSG00000051375.16	Pcdh1	chr18	protein_coding	protocadherin 1
novel_NIR_9272	chr18	38372242	38373892	-	38372242	38372626	A5SS&ES	ENSMUST00000235525.2	novel	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.29	2	5	2	5	y	0.00	0	6	0	6	n	0.50	1	1	1	1	n	0.17	1	5	1	5	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	ENSMUSG00000097080.9	1700086O06Rik	chr18	lncRNA	RIKEN cDNA 1700086O06 gene
novel_NIR_9273	chr18	38372242	38373892	-	38372242	38382767	A5SS	ENSMUST00000181871.3	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	4	0	4	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000097080.9	1700086O06Rik	chr18	lncRNA	RIKEN cDNA 1700086O06 gene
novel_NIR_9274	chr18	38372242	38373892	-	38372242	38383231	A5SS	ENSMUST00000181757.8	novel	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.29	2	5	2	5	y	-	-	-	-	-	-	0.33	1	2	1	2	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	ENSMUSG00000097080.9	1700086O06Rik	chr18	lncRNA	RIKEN cDNA 1700086O06 gene
novel_NIR_9275	chr18	38372242	38373892	-	38372242;38372804	38372626;38373892	ES	ENSMUST00000235608.2	novel	0.00	0	3.5	0	5;2	n	0.00	0	6.0	0	5;7	n	0.17	2	10.0	2	5;15	y	0.00	0	3.5	0	6;1	n	0.29	1	2.5	1	1;4	n	0.18	1	4.5	1	5;4	n	0.00	0	5.0	0	6;4	n	0.00	0	1.0	0	2;0	n	1.00	1	0.0	1	0;0	n	0.00	0	2.0	0	2;2	n	0.00	0	2.0	0	4;0	n	0.00	0	0.5	0	1;0	n	ENSMUSG00000097080.9	1700086O06Rik	chr18	lncRNA	RIKEN cDNA 1700086O06 gene
novel_NIR_9276	chr18	38374006	38383161	-	38374006	38382767	A5SS	ENSMUST00000235608.2	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	19	0	19	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000097080.9	1700086O06Rik	chr18	lncRNA	RIKEN cDNA 1700086O06 gene
novel_NIR_9277	chr18	38374006	38383161	-	38374006	38383231	A5SS	ENSMUST00000235818.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000097080.9	1700086O06Rik	chr18	lncRNA	RIKEN cDNA 1700086O06 gene
novel_NIR_9278	chr18	38429851	38432871	+	38429851	38430306	A3SS&ES	ENSMUST00000236690.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000060450.15	Rnf14	chr18	protein_coding	ring finger protein 14
novel_NIR_9279	chr18	38429851	38432871	+	38429851	38430519	A3SS&ES	ENSMUST00000236982.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.56	5	4	5	4	y	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	ENSMUSG00000060450.15	Rnf14	chr18	protein_coding	ring finger protein 14
novel_NIR_9280	chr18	38429851	38432871	+	38429851	38430553	A3SS&ES	ENSMUST00000237903.2	novel	0.00	0	23	0	23	n	0.00	0	8	0	8	n	0.19	5	22	5	22	y	0.00	0	16	0	16	n	0.00	0	30	0	30	n	0.00	0	22	0	22	n	0.00	0	20	0	20	n	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.00	0	30	0	30	n	0.00	0	15	0	15	n	0.00	0	17	0	17	n	ENSMUSG00000060450.15	Rnf14	chr18	protein_coding	ring finger protein 14
novel_NIR_9281	chr18	38429851	38432871	+	38429851	38431362	A3SS&ES	ENSMUST00000237824.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.83	5	1	5	1	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000060450.15	Rnf14	chr18	protein_coding	ring finger protein 14
novel_NIR_9282	chr18	38429851	38432871	+	38429851	38433482	A3SS	ENSMUST00000237089.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000060450.15	Rnf14	chr18	protein_coding	ring finger protein 14
novel_NIR_9283	chr18	38430258	38430519	+	38429851	38430519	A5SS	ENSMUST00000236982.2	novel	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.40	2	3	2	3	y	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.27	3	8	3	8	y	0.00	0	1	0	1	n	ENSMUSG00000060450.15	Rnf14	chr18	protein_coding	ring finger protein 14
novel_NIR_9284	chr18	38430258	38430519	+	38430258	38430553	A3SS	ENSMUST00000171461.3	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.00	0	2	0	2	n	ENSMUSG00000060450.15	Rnf14	chr18	protein_coding	ring finger protein 14
novel_NIR_9285	chr18	38430258	38430519	+	38430258	38431362	A3SS	ENSMUST00000235811.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000060450.15	Rnf14	chr18	protein_coding	ring finger protein 14
novel_NIR_9286	chr18	38430258	38430519	+	38430268	38430519	A5SS	ENSMUST00000236319.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000060450.15	Rnf14	chr18	protein_coding	ring finger protein 14
novel_NIR_9287	chr18	38430484	38431362	+	38429851	38431362	A5SS	ENSMUST00000237824.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000060450.15	Rnf14	chr18	protein_coding	ring finger protein 14
novel_NIR_9288	chr18	38430484	38431362	+	38430258	38431362	A5SS	ENSMUST00000235811.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000060450.15	Rnf14	chr18	protein_coding	ring finger protein 14
novel_NIR_9289	chr18	38430484	38431362	+	38430484	38432807	A3SS	ENSMUST00000236690.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000060450.15	Rnf14	chr18	protein_coding	ring finger protein 14
novel_NIR_9290	chr18	38432073	38432807	+	38430484	38432807	A5SS	ENSMUST00000236690.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	6	0	6	n	0.22	2	7	2	7	y	0.00	0	3	0	3	n	1.00	4	0	4	0	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.40	2	3	2	3	y	ENSMUSG00000060450.15	Rnf14	chr18	protein_coding	ring finger protein 14
novel_NIR_9291	chr18	38432073	38432807	+	38430628	38432807	A5SS	ENSMUST00000236116.2	novel	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.14	1	6	1	6	n	0.00	0	4	0	4	n	0.18	2	9	2	9	y	0.00	0	8	0	8	n	0.36	4	7	4	7	y	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.33	1	2	1	2	n	0.20	2	8	2	8	y	ENSMUSG00000060450.15	Rnf14	chr18	protein_coding	ring finger protein 14
novel_NIR_9292	chr18	38433636	38434709	+	38433537	38434709	A5SS	ENSMUST00000237667.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000060450.15	Rnf14	chr18	protein_coding	ring finger protein 14
novel_NIR_9293	chr18	38975171	38980100	-	38975174	38980100	A3SS	ENSMUST00000040647.11	novel	0.06	5	82	5	82	n	0.10	6	57	6	57	n	0.12	13	97	13	97	n	0.12	15	115	15	115	n	0.11	19	157	19	157	n	0.12	8	57	8	57	n	0.09	18	174	18	174	n	0.10	12	113	12	113	n	0.00	0	56	0	56	n	0.09	14	139	14	139	n	0.07	7	92	7	92	n	0.16	12	61	12	61	y	ENSMUSG00000036585.17	Fgf1	chr18	protein_coding	fibroblast growth factor 1
novel_NIR_9294	chr18	38991801	38992409	-	38991801	38999110	A5SS	ENSMUST00000139972.2	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	0.33	1	2	1	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036585.17	Fgf1	chr18	protein_coding	fibroblast growth factor 1
novel_NIR_9295	chr18	38991801	38992409	-	38991801	39051600	A5SS	ENSMUST00000040647.11	novel	0.00	0	7	0	7	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.25	1	3	1	3	n	0.11	1	8	1	8	n	0.25	2	6	2	6	y	0.00	0	7	0	7	n	0.00	0	4	0	4	n	ENSMUSG00000036585.17	Fgf1	chr18	protein_coding	fibroblast growth factor 1
novel_NIR_9296	chr18	38991801	38992409	-	38991801	39062159	A5SS	ENSMUST00000235922.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036585.17	Fgf1	chr18	protein_coding	fibroblast growth factor 1
novel_NIR_9297	chr18	38991801	38992409	-	38991801	39062319	A5SS	ENSMUST00000131348.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036585.17	Fgf1	chr18	protein_coding	fibroblast growth factor 1
novel_NIR_9298	chr18	38991801	38999649	-	38991801	38999110	5pMXE	ENSMUST00000139972.2	novel	0.83	5	1	5	1	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	0.67	6	3	6	3	y	1.00	19	0	19	0	y	1.00	8	0	8	0	y	1.00	8	0	8	0	y	0.86	12	2	12	2	y	0.50	2	2	2	2	y	1.00	22	0	22	0	y	1.00	8	0	8	0	y	1.00	6	0	6	0	y	ENSMUSG00000036585.17	Fgf1	chr18	protein_coding	fibroblast growth factor 1
novel_NIR_9299	chr18	38991801	38999649	-	38991801	38999604	A5SS	ENSMUST00000115582.8	novel	0.09	5	48	5	48	n	0.06	3	49	3	49	n	0.07	2	26	2	26	n	0.07	6	83	6	83	n	0.19	19	83	19	83	y	0.19	8	34	8	34	y	0.06	8	124	8	124	n	0.15	12	70	12	70	y	0.04	2	46	2	46	n	0.25	22	66	22	66	y	0.11	8	64	8	64	n	0.16	6	31	6	31	y	ENSMUSG00000036585.17	Fgf1	chr18	protein_coding	fibroblast growth factor 1
novel_NIR_9300	chr18	38991801	38999649	-	38991801	38999888	A5SS	ENSMUST00000236630.2	novel	0.12	5	35	5	35	n	0.09	3	32	3	32	n	0.04	2	49	2	49	n	0.10	6	54	6	54	n	0.25	19	56	19	56	y	0.16	8	41	8	41	y	0.12	8	61	8	61	n	0.21	12	44	12	44	y	0.05	2	36	2	36	n	0.30	22	51	22	51	y	0.21	8	31	8	31	y	0.18	6	27	6	27	y	ENSMUSG00000036585.17	Fgf1	chr18	protein_coding	fibroblast growth factor 1
novel_NIR_9301	chr18	38991801	38999649	-	38991801	39051600	A5SS	ENSMUST00000040647.11	novel	0.42	5	7	5	7	y	0.60	3	2	3	2	y	1.00	2	0	2	0	y	0.46	6	7	6	7	y	0.66	19	10	19	10	y	0.73	8	3	8	3	y	0.53	8	7	8	7	y	0.80	12	3	12	3	y	0.20	2	8	2	8	y	0.79	22	6	22	6	y	0.53	8	7	8	7	y	0.60	6	4	6	4	y	ENSMUSG00000036585.17	Fgf1	chr18	protein_coding	fibroblast growth factor 1
novel_NIR_9302	chr18	38991801	38999649	-	38991801	39062159	A5SS	ENSMUST00000235922.2	novel	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	6	0	6	0	y	1.00	19	0	19	0	y	1.00	8	0	8	0	y	1.00	8	0	8	0	y	0.86	12	2	12	2	y	1.00	2	0	2	0	y	1.00	22	0	22	0	y	1.00	8	0	8	0	y	1.00	6	0	6	0	y	ENSMUSG00000036585.17	Fgf1	chr18	protein_coding	fibroblast growth factor 1
novel_NIR_9303	chr18	38991801	38999649	-	38991801	39062319	A5SS	ENSMUST00000131348.8	novel	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	6	0	6	0	y	1.00	19	0	19	0	y	1.00	8	0	8	0	y	1.00	8	0	8	0	y	1.00	12	0	12	0	y	1.00	2	0	2	0	y	1.00	22	0	22	0	y	1.00	8	0	8	0	y	1.00	6	0	6	0	y	ENSMUSG00000036585.17	Fgf1	chr18	protein_coding	fibroblast growth factor 1
novel_NIR_9304	chr18	38991801	39000009	-	38991801	38999110	5pMXE	ENSMUST00000139972.2	novel	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	ENSMUSG00000036585.17	Fgf1	chr18	protein_coding	fibroblast growth factor 1
novel_NIR_9305	chr18	38991801	39000009	-	38991801	39051600	A5SS	ENSMUST00000040647.11	novel	0.12	1	7	1	7	n	0.33	1	2	1	2	n	1.00	3	0	3	0	y	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.12	1	7	1	7	n	0.00	0	3	0	3	n	0.20	2	8	2	8	y	0.00	0	6	0	6	n	0.30	3	7	3	7	y	0.20	1	4	1	4	n	ENSMUSG00000036585.17	Fgf1	chr18	protein_coding	fibroblast growth factor 1
novel_NIR_9306	chr18	38991801	39000009	-	38991801	39062159	A5SS	ENSMUST00000235922.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	ENSMUSG00000036585.17	Fgf1	chr18	protein_coding	fibroblast growth factor 1
novel_NIR_9307	chr18	38991801	39000009	-	38991801	39062319	A5SS	ENSMUST00000131348.8	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	ENSMUSG00000036585.17	Fgf1	chr18	protein_coding	fibroblast growth factor 1
novel_NIR_9308	chr18	38991801	39014384	-	38991801	38999110	5pMXE	ENSMUST00000139972.2	novel	0.80	4	1	4	1	y	1.00	1	0	1	0	n	1.00	15	0	15	0	y	0.62	5	3	5	3	y	1.00	13	0	13	0	y	1.00	6	0	6	0	y	1.00	7	0	7	0	y	0.87	13	2	13	2	y	0.50	2	2	2	2	y	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	ENSMUSG00000036585.17	Fgf1	chr18	protein_coding	fibroblast growth factor 1
novel_NIR_9309	chr18	38991801	39014384	-	38991801	38999604	5pMXE	ENSMUST00000115582.8	novel	0.08	4	48	4	48	n	0.02	1	49	1	49	n	0.37	15	26	15	26	y	0.06	5	83	5	83	n	0.14	13	83	13	83	n	0.15	6	34	6	34	y	0.05	7	124	7	124	n	0.16	13	70	13	70	y	0.04	2	46	2	46	n	0.07	5	66	5	66	n	0.04	3	64	3	64	n	0.09	3	31	3	31	n	ENSMUSG00000036585.17	Fgf1	chr18	protein_coding	fibroblast growth factor 1
novel_NIR_9310	chr18	38991801	39014384	-	38991801	38999888	5pMXE	ENSMUST00000236630.2	novel	0.10	4	35	4	35	n	0.03	1	32	1	32	n	0.23	15	49	15	49	y	0.08	5	54	5	54	n	0.19	13	56	13	56	y	0.13	6	41	6	41	n	0.10	7	61	7	61	n	0.23	13	44	13	44	y	0.05	2	36	2	36	n	0.09	5	51	5	51	n	0.09	3	31	3	31	n	0.10	3	27	3	27	n	ENSMUSG00000036585.17	Fgf1	chr18	protein_coding	fibroblast growth factor 1
novel_NIR_9311	chr18	38991801	39014384	-	38991801	39051600	A5SS	ENSMUST00000040647.11	novel	0.36	4	7	4	7	y	0.33	1	2	1	2	n	1.00	15	0	15	0	y	0.42	5	7	5	7	y	0.57	13	10	13	10	y	0.67	6	3	6	3	y	0.50	7	7	7	7	y	0.81	13	3	13	3	y	0.20	2	8	2	8	y	0.45	5	6	5	6	y	0.30	3	7	3	7	y	0.43	3	4	3	4	y	ENSMUSG00000036585.17	Fgf1	chr18	protein_coding	fibroblast growth factor 1
novel_NIR_9312	chr18	38991801	39014384	-	38991801	39062159	A5SS	ENSMUST00000235922.2	novel	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	15	0	15	0	y	1.00	5	0	5	0	y	1.00	13	0	13	0	y	1.00	6	0	6	0	y	1.00	7	0	7	0	y	0.87	13	2	13	2	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	ENSMUSG00000036585.17	Fgf1	chr18	protein_coding	fibroblast growth factor 1
novel_NIR_9313	chr18	38991801	39014384	-	38991801	39062319	A5SS	ENSMUST00000131348.8	novel	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	15	0	15	0	y	1.00	5	0	5	0	y	1.00	13	0	13	0	y	1.00	6	0	6	0	y	1.00	7	0	7	0	y	1.00	13	0	13	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	ENSMUSG00000036585.17	Fgf1	chr18	protein_coding	fibroblast growth factor 1
novel_NIR_9314	chr18	39051750	39051961	-	39051750	39062159	A5SS	ENSMUST00000134864.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036585.17	Fgf1	chr18	protein_coding	fibroblast growth factor 1
novel_NIR_9315	chr18	39244908	39253172	+	39244953	39253172	A5SS	ENSMUST00000097593.9	novel	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.18	2	9	2	9	y	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	ENSMUSG00000036452.19	Arhgap26	chr18	protein_coding	Rho GTPase activating protein 26
novel_NIR_9316	chr18	40345268	40351766	-	40345268	40351957	A5SS	ENSMUST00000236741.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024487.6	Yipf5	chr18	protein_coding	Yip1 domain family, member 5
novel_NIR_9317	chr18	44667367	44688763	-	44667367	44794765	A5SS	ENSMUST00000164666.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000071856.11	Mcc	chr18	protein_coding	mutated in colorectal cancers
novel_NIR_9318	chr18	44667367	44688763	-	44667367	44857532	A5SS	ENSMUST00000089874.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000071856.11	Mcc	chr18	protein_coding	mutated in colorectal cancers
novel_NIR_9319	chr18	44667367	44688879	-	44667367	44794765	A5SS	ENSMUST00000164666.6	novel	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	8	0	8	0	y	1.00	12	0	12	0	y	0.90	9	1	9	1	y	0.80	8	2	8	2	y	1.00	11	0	11	0	y	0.95	20	1	20	1	y	1.00	7	0	7	0	y	1.00	22	0	22	0	y	1.00	10	0	10	0	y	1.00	18	0	18	0	y	ENSMUSG00000071856.11	Mcc	chr18	protein_coding	mutated in colorectal cancers
novel_NIR_9320	chr18	44667367	44688879	-	44667367	44857532	A5SS	ENSMUST00000089874.9	novel	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	8	0	8	0	y	1.00	12	0	12	0	y	1.00	9	0	9	0	y	1.00	8	0	8	0	y	1.00	11	0	11	0	y	1.00	20	0	20	0	y	1.00	7	0	7	0	y	1.00	22	0	22	0	y	1.00	10	0	10	0	y	1.00	18	0	18	0	y	ENSMUSG00000071856.11	Mcc	chr18	protein_coding	mutated in colorectal cancers
novel_NIR_9321	chr18	45604382	45637364	-	45635413	45637364	3pMXE	ENSMUST00000236115.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000118074.2	Gm31907	chr18	transcribed_processed_pseudogene	predicted gene, 31907
novel_NIR_9322	chr18	45691358	45692875	-	45639493	45692875	A3SS	ENSMUST00000236115.2	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000118074.2	Gm31907	chr18	transcribed_processed_pseudogene	predicted gene, 31907
novel_NIR_9323	chr18	46401732	46407653	-	46396024	46407653	A3SS	ENSMUST00000235465.2	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	4	0	4	0	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	3	3	3	3	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024477.5	Pggt1b	chr18	protein_coding	protein geranylgeranyltransferase type I, beta subunit
novel_NIR_9324	chr18	46715761	46721628	-	46694139	46721628	A3SS	ENSMUST00000036030.14	novel	1.00	2	0	2	0	y	1.00	7	0	7	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	9	0	9	0	y	ENSMUSG00000033184.15	Tmed7	chr18	protein_coding	transmembrane p24 trafficking protein 7
novel_NIR_9325	chr18	46731415	46731708	+	46731223	46731708	A5SS	ENSMUST00000238168.2	novel	0.00	0	5	0	5	n	1.00	4	0	4	0	y	0.00	0	12	0	12	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.60	3	2	3	2	y	0.33	2	4	2	4	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000057561.11	Eif1a	chr18	protein_coding	eukaryotic translation initiation factor 1A
novel_NIR_9326	chr18	46731767	46732328	+	46731767	46732344	A3SS	ENSMUST00000235455.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	6	0	6	0	y	ENSMUSG00000057561.11	Eif1a	chr18	protein_coding	eukaryotic translation initiation factor 1A
novel_NIR_9327	chr18	46731767	46740578	+	46731767	46732344	A3SS&ES	ENSMUST00000235455.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000057561.11	Eif1a	chr18	protein_coding	eukaryotic translation initiation factor 1A
novel_NIR_9328	chr18	46735143	46740571	+	46732467	46740571	A5SS	ENSMUST00000235455.2	novel	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	8	0	8	n	1.00	1	0	1	0	n	0.67	2	1	2	1	y	0.67	4	2	4	2	y	0.00	0	3	0	3	n	0.11	1	8	1	8	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	ENSMUSG00000057561.11	Eif1a	chr18	protein_coding	eukaryotic translation initiation factor 1A
novel_NIR_9329	chr18	46761863	46772617	+	46764438	46772617	5pMXE	ENSMUST00000236340.2	novel	0.00	0	11	0	11	n	0.15	2	11	2	11	y	0.60	15	10	15	10	y	0.00	0	19	0	19	n	0.16	6	31	6	31	y	0.42	14	19	14	19	y	0.13	4	27	4	27	n	0.64	16	9	16	9	y	0.09	4	42	4	42	n	0.00	0	60	0	60	n	0.00	0	37	0	37	n	0.07	3	42	3	42	n	ENSMUSG00000117780.2	Gm3734	chr18	lncRNA	predicted gene 3734
novel_NIR_9330	chr18	46764438	46774359	+	46764438	46772617	A3SS&ES	ENSMUST00000236340.2	novel	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	19	0	19	n	0.03	1	31	1	31	n	0.00	0	19	0	19	n	0.10	3	27	3	27	n	0.18	2	9	2	9	y	0.00	0	42	0	42	n	0.00	0	60	0	60	n	0.03	1	37	1	37	n	0.02	1	42	1	42	n	ENSMUSG00000117780.2	Gm3734	chr18	lncRNA	predicted gene 3734
novel_NIR_9331	chr18	46772755	46774359	+	46772755	46774318	A3SS	ENSMUST00000236340.2	novel	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.58	11	8	11	8	y	0.00	0	8	0	8	n	0.25	4	12	4	12	y	0.00	0	4	0	4	n	0.63	12	7	12	7	y	0.75	9	3	9	3	y	0.19	5	21	5	21	y	0.57	37	28	37	28	y	0.52	12	11	12	11	y	0.47	20	23	20	23	y	ENSMUSG00000117780.2	Gm3734	chr18	lncRNA	predicted gene 3734
novel_NIR_9332	chr18	46853508	46856380	-	46853508	46861040	A5SS	ENSMUST00000234819.2	novel	0.80	33	8	33	8	y	0.91	31	3	31	3	y	0.73	16	6	16	6	y	0.68	25	12	25	12	y	0.72	51	20	51	20	y	0.68	23	11	23	11	y	0.81	46	11	46	11	y	0.72	31	12	31	12	y	0.82	32	7	32	7	y	0.80	48	12	48	12	y	0.71	30	12	30	12	y	0.89	39	5	39	5	y	ENSMUSG00000033022.9	Cdo1	chr18	protein_coding	cysteine dioxygenase 1, cytosolic
novel_NIR_9333	chr18	4849003	4849486	+	4848569	4849486	A5SS	ENSMUST00000180904.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000097043.2	Gm10556	chr18	lncRNA	predicted gene 10556
novel_NIR_9334	chr18	4849303	4849486	+	4848569	4849486	A5SS	ENSMUST00000180904.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000097043.2	Gm10556	chr18	lncRNA	predicted gene 10556
novel_NIR_9335	chr18	4920874	5012052	+	4920874	4971090	A3SS&ES	ENSMUST00000131210.8	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.25	2	6	2	6	y	ENSMUSG00000024236.19	Svil	chr18	protein_coding	supervillin
novel_NIR_9336	chr18	4920874	5012052	+	4920874	5037108	A3SS	ENSMUST00000126977.8	novel	0.00	0	4	0	4	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	ENSMUSG00000024236.19	Svil	chr18	protein_coding	supervillin
novel_NIR_9337	chr18	50013909	50015623	+	50013909	50021783	A3SS	ENSMUST00000180611.8	novel	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.10	1	9	1	9	n	0.00	0	10	0	10	n	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.40	2	3	2	3	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	14	0	14	n	ENSMUSG00000037416.14	Dmxl1	chr18	protein_coding	Dmx-like 1
novel_NIR_9338	chr18	50027364	50028122	+	50027364	50028049	A3SS	ENSMUST00000180611.8	novel	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.09	1	10	1	10	n	0.00	0	16	0	16	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.08	1	11	1	11	n	0.00	0	11	0	11	n	0.29	2	5	2	5	y	ENSMUSG00000037416.14	Dmxl1	chr18	protein_coding	Dmx-like 1
novel_NIR_9339	chr18	50027364	50031822	+	50027364	50028049	A3SS&ES	ENSMUST00000180611.8	novel	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.29	2	5	2	5	y	ENSMUSG00000037416.14	Dmxl1	chr18	protein_coding	Dmx-like 1
novel_NIR_9340	chr18	5090959	5091037	+	5090959	5092845	A3SS	ENSMUST00000126977.8	novel	0.00	0	22	0	22	n	0.15	2	11	2	11	y	0.00	0	26	0	26	n	0.00	0	24	0	24	n	0.00	0	30	0	30	n	0.00	0	16	0	16	n	0.00	0	31	0	31	n	0.00	0	17	0	17	n	0.00	0	14	0	14	n	0.00	0	21	0	21	n	0.00	0	37	0	37	n	0.00	0	28	0	28	n	ENSMUSG00000024236.19	Svil	chr18	protein_coding	supervillin
novel_NIR_9341	chr18	52608756	52609369	+	52608756	52609372	A3SS	ENSMUST00000237229.2	novel	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	21	0	21	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.00	0	17	0	17	n	0.29	2	5	2	5	y	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.00	0	18	0	18	n	ENSMUSG00000024528.9	Srfbp1	chr18	protein_coding	serum response factor binding protein 1
novel_NIR_9342	chr18	53705359	53708027	+	53701404	53708027	A5SS	ENSMUST00000091900.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000069378.15	Prdm6	chr18	protein_coding	PR domain containing 6
novel_NIR_9343	chr18	53840053	53846454	-	53840053;53842221	53842129;53846454	ES	ENSMUST00000049811.8	novel	0.00	0	20.5	0	15;26	n	0.00	0	11.0	0	14;8	n	0.06	2	30.0	2	30;30	n	0.00	0	19.5	0	22;17	n	0.23	5	16.5	5	16;17	y	0.00	0	9.0	0	9;9	n	0.11	2	17.0	2	15;19	n	0.00	0	9.0	0	13;5	n	0.05	1	20.0	1	16;24	n	0.00	0	22.0	0	23;21	n	0.00	0	21.0	0	21;21	n	0.00	0	32.5	0	29;36	n	ENSMUSG00000048799.9	Cep120	chr18	protein_coding	centrosomal protein 120
novel_NIR_9344	chr18	53840053	53846454	-	53842221	53846454	3pMXE	ENSMUST00000237145.2	novel	0.00	0	26	0	26	n	0.00	0	8	0	8	n	0.06	2	30	2	30	n	0.00	0	17	0	17	n	0.23	5	17	5	17	y	0.00	0	9	0	9	n	0.10	2	19	2	19	n	0.00	0	5	0	5	n	0.04	1	24	1	24	n	0.00	0	21	0	21	n	0.00	0	21	0	21	n	0.00	0	36	0	36	n	ENSMUSG00000048799.9	Cep120	chr18	protein_coding	centrosomal protein 120
novel_NIR_9345	chr18	54063434	54065266	+	54063434	54065263	A3SS	ENSMUST00000069597.8	novel	0.34	16	31	16	31	y	0.27	12	33	12	33	y	0.39	29	46	29	46	y	0.42	21	29	21	29	y	0.34	27	53	27	53	y	0.40	18	27	18	27	y	0.33	30	60	30	60	y	0.18	9	41	9	41	y	0.29	14	34	14	34	y	0.34	23	45	23	45	y	0.26	15	42	15	42	y	0.34	12	23	12	23	y	ENSMUSG00000073563.4	Csnk1g3	chr18	protein_coding	casein kinase 1, gamma 3
novel_NIR_9346	chr18	55079880	55112242	-	55079880	55089658	5pMXE	ENSMUST00000238150.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000052713.10	Zfp608	chr18	protein_coding	zinc finger protein 608
novel_NIR_9347	chr18	55079880	55112242	-	55079880	55120683	A5SS	ENSMUST00000064763.7	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.22	2	7	2	7	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000052713.10	Zfp608	chr18	protein_coding	zinc finger protein 608
novel_NIR_9348	chr18	5620555	5633204	+	5591967	5633204	A5SS	ENSMUST00000224200.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000024238.16	Zeb1	chr18	protein_coding	zinc finger E-box binding homeobox 1
novel_NIR_9349	chr18	56533647	56561637	+	56533647	56565191	A3SS	ENSMUST00000237355.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.25	1	3	1	3	n	0.60	3	2	3	2	y	0.00	0	1	0	1	n	0.75	3	1	3	1	y	-	-	-	-	-	-	ENSMUSG00000001700.11	Gramd3	chr18	protein_coding	GRAM domain containing 3
novel_NIR_9350	chr18	56533647	56602610	+	56533647	56565191	A3SS&ES	ENSMUST00000237355.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.88	7	1	7	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000001700.11	Gramd3	chr18	protein_coding	GRAM domain containing 3
novel_NIR_9351	chr18	56658449	56659806	-	56651659	56659806	A3SS	ENSMUST00000172902.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000053644.14	Aldh7a1	chr18	protein_coding	aldehyde dehydrogenase family 7, member A1
novel_NIR_9352	chr18	57091259	57091595	-	57090993	57091595	A3SS	ENSMUST00000025488.15	novel	0.11	2	17	2	17	n	0.08	1	12	1	12	n	0.08	2	24	2	24	n	0.04	1	23	1	23	n	0.03	1	37	1	37	n	0.06	1	16	1	16	n	0.07	3	40	3	40	n	0.27	4	11	4	11	n	0.22	4	14	4	14	y	0.06	2	34	2	34	n	0.00	0	30	0	30	n	0.00	0	19	0	19	n	ENSMUSG00000024592.16	C330018D20Rik	chr18	protein_coding	RIKEN cDNA C330018D20 gene
novel_NIR_9353	chr18	57095590	57105877	-	57095590	57100165	A5SS&ES	ENSMUST00000139243.9	novel	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000024592.16	C330018D20Rik	chr18	protein_coding	RIKEN cDNA C330018D20 gene
novel_NIR_9354	chr18	57095590	57105877	-	57101982	57105877	3pMXE	ENSMUST00000152087.3	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024592.16	C330018D20Rik	chr18	protein_coding	RIKEN cDNA C330018D20 gene
novel_NIR_9355	chr18	57493175	57495505	+	57488712	57495505	A5SS	ENSMUST00000238069.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000024594.10	Prrc1	chr18	protein_coding	proline-rich coiled-coil 1
novel_NIR_9356	chr18	57604011	57605684	+	57601908	57605684	A5SS	ENSMUST00000209782.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000069372.4	Ctxn3	chr18	protein_coding	cortexin 3
novel_NIR_9357	chr18	57604011	57605684	+	57605603	57605684	5pMXE	ENSMUST00000209786.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000069372.4	Ctxn3	chr18	protein_coding	cortexin 3
novel_NIR_9358	chr18	57604011	57610086	+	57601908	57610086	A5SS	ENSMUST00000091892.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	2	4	2	4	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000069372.4	Ctxn3	chr18	protein_coding	cortexin 3
novel_NIR_9359	chr18	57604011	57610086	+	57605768	57610086	A5SS&ES	ENSMUST00000209782.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000069372.4	Ctxn3	chr18	protein_coding	cortexin 3
novel_NIR_9360	chr18	60345241	60349926	+	60345241	60345628	A3SS&ES	ENSMUST00000031549.6	novel	0.50	6	6	6	6	n	0.44	7	9	7	9	y	0.46	13	15	13	15	n	0.48	12	13	12	13	n	0.33	9	18	9	18	n	0.43	6	8	6	8	n	0.50	7	7	7	7	n	0.53	8	7	8	7	y	0.47	9	10	9	10	y	0.45	9	11	9	11	n	0.38	6	10	6	10	n	0.29	9	22	9	22	n	ENSMUSG00000073555.2	Gm4951	chr18	protein_coding	predicted gene 4951
novel_NIR_9361	chr18	60345241	60353902	+	60345241	60345628	A3SS&ES	ENSMUST00000031549.6	novel	0.25	2	6	2	6	y	0.00	0	9	0	9	n	0.21	4	15	4	15	y	0.19	3	13	3	13	y	0.05	1	18	1	18	n	0.27	3	8	3	8	y	0.30	3	7	3	7	y	0.30	3	7	3	7	y	0.17	2	10	2	10	y	0.27	4	11	4	11	y	0.09	1	10	1	10	n	0.04	1	22	1	22	n	ENSMUSG00000073555.2	Gm4951	chr18	protein_coding	predicted gene 4951
novel_NIR_9362	chr18	60345241	60364096	+	60345241	60345628	A3SS&ES	ENSMUST00000031549.6	novel	0.00	0	6	0	6	n	0.18	2	9	2	9	y	0.29	6	15	6	15	n	0.38	8	13	8	13	n	0.00	0	18	0	18	n	0.00	0	8	0	8	n	0.12	1	7	1	7	n	0.30	3	7	3	7	n	0.38	6	10	6	10	y	0.58	15	11	15	11	y	0.29	4	10	4	10	y	0.51	23	22	23	22	y	ENSMUSG00000073555.2	Gm4951	chr18	protein_coding	predicted gene 4951
novel_NIR_9363	chr18	60345241	60366318	+	60345241	60345628	A3SS&ES	ENSMUST00000031549.6	novel	0.45	5	6	5	6	y	0.18	2	9	2	9	y	0.21	4	15	4	15	y	0.19	3	13	3	13	y	0.10	2	18	2	18	n	0.00	0	8	0	8	n	0.12	1	7	1	7	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.21	3	11	3	11	y	0.00	0	10	0	10	n	0.00	0	22	0	22	n	ENSMUSG00000073555.2	Gm4951	chr18	protein_coding	predicted gene 4951
novel_NIR_9364	chr18	60345241	60378447	+	60345241;60345736	60345628;60378447	ES	ENSMUST00000031549.6	novel	0.80	47	11.5	47	6;17	y	0.74	25	9.0	25	9;9	y	0.00	0	12.5	0	15;10	n	0.81	95	23.0	95	13;33	y	0.75	81	26.5	81	18;35	y	0.76	26	8.0	26	8;8	y	0.80	66	17.0	66	7;27	y	0.83	42	8.5	42	7;10	y	0.81	76	18.0	76	10;26	y	0.78	68	19.5	68	11;28	y	0.68	34	16.0	34	10;22	y	0.80	95	23.5	95	22;25	y	ENSMUSG00000073555.2	Gm4951	chr18	protein_coding	predicted gene 4951
novel_NIR_9365	chr18	60345241	60378493	+	60345241	60345628	A3SS&ES	ENSMUST00000031549.6	novel	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.28	5	13	5	13	y	0.18	4	18	4	18	y	0.00	0	8	0	8	n	0.12	1	7	1	7	n	0.00	0	7	0	7	n	0.09	1	10	1	10	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.19	5	22	5	22	y	ENSMUSG00000073555.2	Gm4951	chr18	protein_coding	predicted gene 4951
novel_NIR_9366	chr18	60345241;60350026	60349926;60378447	+	60345241;60345736	60345628;60378447	MXE	ENSMUST00000031549.6	novel	0.38	7.0	11.5	6;8	6;17	y	0.28	3.5	9.0	7;0	9;9	n	0.36	7.0	12.5	13;1	15;10	n	0.23	7.0	23.0	12;2	13;33	y	0.23	8.0	26.5	9;7	18;35	y	0.38	5.0	8.0	6;4	8;8	y	0.32	8.0	17.0	7;9	7;27	y	0.32	4.0	8.5	8;0	7;10	n	0.20	4.5	18.0	9;0	10;26	n	0.28	7.5	19.5	9;6	11;28	y	0.20	4.0	16.0	6;2	10;22	y	0.19	5.5	23.5	9;2	22;25	y	ENSMUSG00000073555.2	Gm4951	chr18	protein_coding	predicted gene 4951
novel_NIR_9367	chr18	60345241;60364182	60364096;60378447	+	60345241;60345736	60345628;60378447	MXE	ENSMUST00000031549.6	novel	0.00	0.0	11.5	0;0	6;17	n	0.10	1.0	9.0	2;0	9;9	n	0.29	5.0	12.5	6;4	15;10	y	0.18	5.0	23.0	8;2	13;33	y	0.00	0.0	26.5	0;0	18;35	n	0.00	0.0	8.0	0;0	8;8	n	0.03	0.5	17.0	1;0	7;27	n	0.19	2.0	8.5	3;1	7;10	n	0.14	3.0	18.0	6;0	10;26	n	0.28	7.5	19.5	15;0	11;28	n	0.11	2.0	16.0	4;0	10;22	n	0.33	11.5	23.5	23;0	22;25	n	ENSMUSG00000073555.2	Gm4951	chr18	protein_coding	predicted gene 4951
novel_NIR_9368	chr18	60345241;60377235	60377160;60378447	+	60345241;60345736	60345628;60378447	MXE	ENSMUST00000031549.6	novel	0.00	0.0	11.5	0;0	6;17	n	0.00	0.0	9.0	0;0	9;9	n	0.00	0.0	12.5	0;0	15;10	n	0.00	0.0	23.0	0;0	13;33	n	0.00	0.0	26.5	0;0	18;35	n	0.00	0.0	8.0	0;0	8;8	n	0.03	0.5	17.0	1;0	7;27	n	0.06	0.5	8.5	1;0	7;10	n	0.00	0.0	18.0	0;0	10;26	n	0.00	0.0	19.5	0;0	11;28	n	0.22	4.5	16.0	5;4	10;22	y	0.00	0.0	23.5	0;0	22;25	n	ENSMUSG00000073555.2	Gm4951	chr18	protein_coding	predicted gene 4951
novel_NIR_9369	chr18	60372116	60378447	+	60345736	60378447	A5SS	ENSMUST00000031549.6	novel	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.67	20	10	20	10	y	0.00	0	33	0	33	n	0.00	0	35	0	35	n	0.00	0	8	0	8	n	0.00	0	27	0	27	n	0.00	0	10	0	10	n	0.00	0	26	0	26	n	0.18	6	28	6	28	y	0.04	1	22	1	22	n	0.00	0	25	0	25	n	ENSMUSG00000073555.2	Gm4951	chr18	protein_coding	predicted gene 4951
novel_NIR_9370	chr18	60401268	60406241	-	60404111	60406241	3pMXE	ENSMUST00000090260.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.80	4	1	4	1	y	ENSMUSG00000068606.7	Gm4841	chr18	protein_coding	predicted gene 4841
novel_NIR_9371	chr18	60509202	60574806	+	60509202	60510519	3pMXE	ENSMUST00000237794.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000054072.13	Iigp1	chr18	protein_coding	interferon inducible GTPase 1
novel_NIR_9372	chr18	60509202	60574806	+	60509202	60522864	3pMXE	ENSMUST00000066912.13	novel	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	18	0	18	n	ENSMUSG00000054072.13	Iigp1	chr18	protein_coding	interferon inducible GTPase 1
novel_NIR_9373	chr18	60515996	60522864	+	60509202	60522864	A5SS	ENSMUST00000066912.13	novel	0.00	0	6	0	6	n	0.57	4	3	4	3	y	0.00	0	4	0	4	n	0.78	7	2	7	2	y	0.56	5	4	5	4	y	0.50	1	1	1	1	n	0.75	3	1	3	1	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.33	3	6	3	6	y	0.00	0	3	0	3	n	0.00	0	18	0	18	n	ENSMUSG00000054072.13	Iigp1	chr18	protein_coding	interferon inducible GTPase 1
novel_NIR_9374	chr18	60516358	60522864	+	60509202	60522864	A5SS	ENSMUST00000066912.13	novel	0.14	1	6	1	6	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.33	2	4	2	4	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.40	2	3	2	3	y	0.00	0	18	0	18	n	ENSMUSG00000054072.13	Iigp1	chr18	protein_coding	interferon inducible GTPase 1
novel_NIR_9375	chr18	60521429	60522864	+	60509202	60522864	A5SS	ENSMUST00000066912.13	novel	0.68	13	6	13	6	y	0.83	15	3	15	3	y	0.93	53	4	53	4	y	0.96	48	2	48	2	y	0.89	34	4	34	4	y	0.94	17	1	17	1	y	0.98	50	1	50	1	y	1.00	30	0	30	0	y	0.89	24	3	24	3	y	0.82	27	6	27	6	y	0.87	20	3	20	3	y	0.55	22	18	22	18	n	ENSMUSG00000054072.13	Iigp1	chr18	protein_coding	interferon inducible GTPase 1
novel_NIR_9376	chr18	60521442	60522864	+	60509202	60522864	A5SS	ENSMUST00000066912.13	novel	0.70	14	6	14	6	y	0.50	3	3	3	3	y	0.92	46	4	46	4	y	0.89	17	2	17	2	y	0.84	21	4	21	4	y	0.86	6	1	6	1	y	0.95	19	1	19	1	y	1.00	17	0	17	0	y	0.84	16	3	16	3	y	0.68	13	6	13	6	y	0.86	19	3	19	3	y	0.42	13	18	13	18	n	ENSMUSG00000054072.13	Iigp1	chr18	protein_coding	interferon inducible GTPase 1
novel_NIR_9377	chr18	6056993	6057513	-	6056993	6057517	A5SS	ENSMUST00000182213.8	novel	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	ENSMUSG00000041225.17	Arhgap12	chr18	protein_coding	Rho GTPase activating protein 12
novel_NIR_9378	chr18	6064421	6111685	-	6052923	6111685	A3SS	ENSMUST00000182921.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041225.17	Arhgap12	chr18	protein_coding	Rho GTPase activating protein 12
novel_NIR_9379	chr18	6064421	6111685	-	6064421	6065705	A5SS&ES	ENSMUST00000181989.8	novel	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.15	2	11	2	11	y	0.00	0	17	0	17	n	0.00	0	5	0	5	n	0.12	1	7	1	7	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.00	0	21	0	21	n	ENSMUSG00000041225.17	Arhgap12	chr18	protein_coding	Rho GTPase activating protein 12
novel_NIR_9380	chr18	6070091	6115814	-	6070091	6073211	A5SS&ES	ENSMUST00000181989.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.60	3	2	3	2	y	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000041225.17	Arhgap12	chr18	protein_coding	Rho GTPase activating protein 12
novel_NIR_9381	chr18	6070091	6115814	-	6070091	6092785	5pMXE	ENSMUST00000182101.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041225.17	Arhgap12	chr18	protein_coding	Rho GTPase activating protein 12
novel_NIR_9382	chr18	6070091	6115814	-	6070091	6135804	A5SS	ENSMUST00000182614.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.75	3	1	3	1	y	0.50	4	4	4	4	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000041225.17	Arhgap12	chr18	protein_coding	Rho GTPase activating protein 12
novel_NIR_9383	chr18	6070091	6115814	-	6070091;6112439	6111685;6115814	ES	ENSMUST00000077128.13	novel	0.00	0	10.0	0	9;11	n	0.00	0	6.5	0	8;5	n	0.00	0	13.5	0	15;12	n	0.16	3	15.5	3	19;12	y	0.12	4	30.5	4	36;25	n	0.00	0	16.5	0	26;7	n	0.00	0	11.5	0	10;13	n	0.00	0	18.5	0	15;22	n	0.00	0	11.0	0	17;5	n	0.00	0	14.5	0	21;8	n	0.00	0	13.0	0	14;12	n	0.00	0	22.0	0	25;19	n	ENSMUSG00000041225.17	Arhgap12	chr18	protein_coding	Rho GTPase activating protein 12
novel_NIR_9384	chr18	60729560	60736802	-	60729560	60733467	5pMXE	ENSMUST00000128528.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000043079.18	Synpo	chr18	protein_coding	synaptopodin
novel_NIR_9385	chr18	60729560	60736802	-	60729560	60735185	A5SS	ENSMUST00000097566.10	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	23	0	23	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.33	3	6	3	6	y	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000043079.18	Synpo	chr18	protein_coding	synaptopodin
novel_NIR_9386	chr18	60729560	60736802	-	60729560	60735305	A5SS	ENSMUST00000130360.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	5	0	5	n	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000043079.18	Synpo	chr18	protein_coding	synaptopodin
novel_NIR_9387	chr18	60737562	60737658	-	60737562	60742979	A5SS	ENSMUST00000160395.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000043079.18	Synpo	chr18	protein_coding	synaptopodin
novel_NIR_9388	chr18	60737562	60737658	-	60737562	60742983	A5SS	ENSMUST00000155195.3	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000043079.18	Synpo	chr18	protein_coding	synaptopodin
novel_NIR_9389	chr18	60737562	60737658	-	60737562	60756303	A5SS	ENSMUST00000123288.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000043079.18	Synpo	chr18	protein_coding	synaptopodin
novel_NIR_9390	chr18	60737562	60737658	-	60737562	60757243	A5SS	ENSMUST00000097566.10	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000043079.18	Synpo	chr18	protein_coding	synaptopodin
novel_NIR_9391	chr18	60737562	60737658	-	60737562	60757561	A5SS	ENSMUST00000130044.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000043079.18	Synpo	chr18	protein_coding	synaptopodin
novel_NIR_9392	chr18	60737562	60737658	-	60737562	60762524	A5SS	ENSMUST00000130360.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000043079.18	Synpo	chr18	protein_coding	synaptopodin
novel_NIR_9393	chr18	60743073	60762524	-	60737562	60762524	A3SS	ENSMUST00000130360.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.50	3	3	3	3	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000043079.18	Synpo	chr18	protein_coding	synaptopodin
novel_NIR_9394	chr18	60743073	60762524	-	60740096	60762524	A3SS	ENSMUST00000137894.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000043079.18	Synpo	chr18	protein_coding	synaptopodin
novel_NIR_9395	chr18	60743073	60762524	-	60743073	60757243	5pMXE	ENSMUST00000155195.3	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000043079.18	Synpo	chr18	protein_coding	synaptopodin
novel_NIR_9396	chr18	60786103	60787335	-	60786103	60793174	A5SS	ENSMUST00000137894.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000043079.18	Synpo	chr18	protein_coding	synaptopodin
novel_NIR_9397	chr18	60846704	60856359	-	60846704	60866080	A5SS	ENSMUST00000237885.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000054008.10	Ndst1	chr18	protein_coding	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
novel_NIR_9398	chr18	60846704	60856359	-	60846704	60881383	A5SS	ENSMUST00000237070.2	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.22	2	7	2	7	y	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	ENSMUSG00000054008.10	Ndst1	chr18	protein_coding	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
novel_NIR_9399	chr18	60846704	60856359	-	60846704	60881573	A5SS	ENSMUST00000237783.2	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.22	2	7	2	7	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	ENSMUSG00000054008.10	Ndst1	chr18	protein_coding	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
novel_NIR_9400	chr18	60846704	60856696	-	60846704	60860553	A5SS	ENSMUST00000235795.2	novel	0.67	6	3	6	3	y	0.76	13	4	13	4	y	0.17	5	25	5	25	y	0.58	21	15	21	15	y	0.62	24	15	24	15	y	0.32	9	19	9	19	y	0.47	8	9	8	9	y	0.31	13	29	13	29	y	0.65	11	6	11	6	y	0.58	18	13	18	13	y	0.67	18	9	18	9	y	0.70	26	11	26	11	y	ENSMUSG00000054008.10	Ndst1	chr18	protein_coding	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
novel_NIR_9401	chr18	60846704	60856696	-	60846704	60866080	A5SS	ENSMUST00000237885.2	novel	1.00	6	0	6	0	y	1.00	13	0	13	0	y	1.00	5	0	5	0	y	1.00	21	0	21	0	y	1.00	24	0	24	0	y	0.90	9	1	9	1	y	1.00	8	0	8	0	y	1.00	13	0	13	0	y	1.00	11	0	11	0	y	1.00	18	0	18	0	y	1.00	18	0	18	0	y	1.00	26	0	26	0	y	ENSMUSG00000054008.10	Ndst1	chr18	protein_coding	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
novel_NIR_9402	chr18	60846704	60856696	-	60846704	60881383	A5SS	ENSMUST00000237070.2	novel	0.86	6	1	6	1	y	0.81	13	3	13	3	y	0.36	5	9	5	9	y	0.75	21	7	21	7	y	0.77	24	7	24	7	y	0.75	9	3	9	3	y	0.57	8	6	8	6	y	0.76	13	4	13	4	y	0.92	11	1	11	1	y	0.62	18	11	18	11	y	0.82	18	4	18	4	y	0.79	26	7	26	7	y	ENSMUSG00000054008.10	Ndst1	chr18	protein_coding	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
novel_NIR_9403	chr18	60846704	60856696	-	60846704	60881573	A5SS	ENSMUST00000237783.2	novel	0.60	6	4	6	4	y	1.00	13	0	13	0	y	0.83	5	1	5	1	y	0.75	21	7	21	7	y	0.86	24	4	24	4	y	0.60	9	6	9	6	y	0.57	8	6	8	6	y	0.65	13	7	13	7	y	0.92	11	1	11	1	y	0.78	18	5	18	5	y	0.82	18	4	18	4	y	0.84	26	5	26	5	y	ENSMUSG00000054008.10	Ndst1	chr18	protein_coding	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
novel_NIR_9404	chr18	60846704	60880003	-	60846704	60866080	5pMXE	ENSMUST00000237885.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000054008.10	Ndst1	chr18	protein_coding	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
novel_NIR_9405	chr18	60846704	60880003	-	60846704	60881383	A5SS	ENSMUST00000237070.2	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.22	2	7	2	7	y	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	ENSMUSG00000054008.10	Ndst1	chr18	protein_coding	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
novel_NIR_9406	chr18	60846704	60880003	-	60846704	60881573	A5SS	ENSMUST00000237783.2	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.22	2	7	2	7	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	ENSMUSG00000054008.10	Ndst1	chr18	protein_coding	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
novel_NIR_9407	chr18	60846704	60881276	-	60846704	60860553	5pMXE	ENSMUST00000235795.2	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.04	1	25	1	25	n	0.00	0	15	0	15	n	0.00	0	15	0	15	n	0.00	0	19	0	19	n	0.18	2	9	2	9	y	0.00	0	29	0	29	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	ENSMUSG00000054008.10	Ndst1	chr18	protein_coding	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
novel_NIR_9408	chr18	60846704	60881276	-	60846704	60866080	5pMXE	ENSMUST00000237885.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000054008.10	Ndst1	chr18	protein_coding	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
novel_NIR_9409	chr18	60846704	60881276	-	60846704	60881383	A5SS	ENSMUST00000237070.2	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.10	1	9	1	9	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.25	2	6	2	6	y	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	ENSMUSG00000054008.10	Ndst1	chr18	protein_coding	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
novel_NIR_9410	chr18	60846704	60881276	-	60846704	60881573	A5SS	ENSMUST00000237783.2	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.25	2	6	2	6	y	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	ENSMUSG00000054008.10	Ndst1	chr18	protein_coding	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
novel_NIR_9411	chr18	60846704	60881999	-	60846704	60866080	5pMXE	ENSMUST00000237885.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000054008.10	Ndst1	chr18	protein_coding	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
novel_NIR_9412	chr18	60846704	60881999	-	60846704	60881383	5pMXE	ENSMUST00000237070.2	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.18	2	9	2	9	y	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.08	1	11	1	11	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	ENSMUSG00000054008.10	Ndst1	chr18	protein_coding	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
novel_NIR_9413	chr18	60846704	60881999	-	60846704	60881573	5pMXE	ENSMUST00000237783.2	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	ENSMUSG00000054008.10	Ndst1	chr18	protein_coding	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
novel_NIR_9414	chr18	61113226	61116256	+	61113226	61117398	A3SS	ENSMUST00000102888.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024617.17	Camk2a	chr18	protein_coding	calcium/calmodulin-dependent protein kinase II alpha
novel_NIR_9415	chr18	61201291	61201817	+	61201291	61201814	A3SS	ENSMUST00000025522.11	novel	-	-	-	-	-	-	0.50	1	1	1	1	n	0.29	2	5	2	5	y	1.00	4	0	4	0	y	0.00	0	4	0	4	n	1.00	1	0	1	0	n	0.25	1	3	1	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	ENSMUSG00000024620.12	Pdgfrb	chr18	protein_coding	platelet derived growth factor receptor, beta polypeptide
novel_NIR_9416	chr18	61290586	61290687	-	61290590	61290687	A3SS	ENSMUST00000091884.6	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.25	2	6	2	6	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000024622.9	Hmgxb3	chr18	protein_coding	HMG box domain containing 3
novel_NIR_9417	chr18	61713558	61717276	+	61713558	61715107	3pMXE	ENSMUST00000164253.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000024576.15	Csnk1a1	chr18	protein_coding	casein kinase 1, alpha 1
novel_NIR_9418	chr18	61835082	61835267	-	61832575	61835267	A3SS	ENSMUST00000025472.7	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.75	3	1	3	1	y	-	-	-	-	-	-	ENSMUSG00000024579.8	Pcyox1l	chr18	protein_coding	prenylcysteine oxidase 1 like
novel_NIR_9419	chr18	61835441	61836424	-	61835441	61836417	A5SS	ENSMUST00000195229.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000024579.8	Pcyox1l	chr18	protein_coding	prenylcysteine oxidase 1 like
novel_NIR_9420	chr18	61835441	61836424	-	61835441	61836583	A5SS	ENSMUST00000025472.7	novel	-	-	-	-	-	-	0.33	1	2	1	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.50	1	1	1	1	n	0.00	0	3	0	3	n	ENSMUSG00000024579.8	Pcyox1l	chr18	protein_coding	prenylcysteine oxidase 1 like
novel_NIR_9421	chr18	61851906	61852235	-	61851906	61852082	A5SS	ENSMUST00000237466.2	novel	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.26	9	25	9	25	y	0.00	0	9	0	9	n	0.07	1	13	1	13	n	0.23	3	10	3	10	y	0.04	1	26	1	26	n	0.32	6	13	6	13	y	0.13	2	13	2	13	n	0.21	7	27	7	27	y	0.00	0	10	0	10	n	0.14	5	30	5	30	n	ENSMUSG00000024580.9	Grpel2	chr18	protein_coding	GrpE-like 2, mitochondrial
novel_NIR_9422	chr18	61950040	61952862	-	61950040;61952158	61952060;61952862	ES	ENSMUST00000166783.3	novel	0.91	5	0.5	5	0;1	y	1.00	1	0.0	1	0;0	n	0.95	19	1.0	19	0;2	y	1.00	5	0.0	5	0;0	y	1.00	11	0.0	11	0;0	y	1.00	8	0.0	8	0;0	y	1.00	10	0.0	10	0;0	y	0.89	8	1.0	8	1;1	y	1.00	4	0.0	4	0;0	y	1.00	6	0.0	6	0;0	y	-	-	-	-	-	-	1.00	5	0.0	5	0;0	y	ENSMUSG00000032735.16	Ablim3	chr18	protein_coding	actin binding LIM protein family, member 3
novel_NIR_9423	chr18	62016625	62044300	-	62004774	62044300	A3SS	ENSMUST00000166783.3	novel	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.03	1	34	1	34	n	0.00	0	23	0	23	n	0.10	3	26	3	26	n	0.00	0	25	0	25	n	0.07	2	26	2	26	n	0.17	2	10	2	10	y	0.00	0	17	0	17	n	0.00	0	20	0	20	n	0.00	0	11	0	11	n	0.00	0	30	0	30	n	ENSMUSG00000032735.16	Ablim3	chr18	protein_coding	actin binding LIM protein family, member 3
novel_NIR_9424	chr18	6203707	6208185	-	6203707	6208187	A5SS	ENSMUST00000025083.14	novel	0.15	5	28	5	28	y	0.06	1	16	1	16	n	0.16	17	91	17	91	y	0.13	6	41	6	41	n	0.09	7	73	7	73	n	0.15	5	29	5	29	y	0.02	1	56	1	56	n	0.22	8	29	8	29	y	0.05	2	37	2	37	n	0.03	1	37	1	37	n	0.04	2	44	2	44	n	0.13	6	40	6	40	n	ENSMUSG00000006740.15	Kif5b	chr18	protein_coding	kinesin family member 5B
novel_NIR_9425	chr18	6227661	6229678	-	6227661	6234815	A5SS	ENSMUST00000025083.14	novel	0.00	0	26	0	26	n	0.00	0	10	0	10	n	0.00	0	52	0	52	n	0.00	0	35	0	35	n	0.00	0	30	0	30	n	0.00	0	16	0	16	n	0.00	0	49	0	49	n	0.00	0	16	0	16	n	0.23	3	10	3	10	y	0.00	0	23	0	23	n	0.00	0	15	0	15	n	0.00	0	26	0	26	n	ENSMUSG00000006740.15	Kif5b	chr18	protein_coding	kinesin family member 5B
novel_NIR_9426	chr18	62644185	62648091	-	62644185	62647866	A5SS	ENSMUST00000048688.8	novel	0.09	2	21	2	21	n	0.18	3	14	3	14	y	0.28	15	39	15	39	y	0.19	6	25	6	25	y	0.19	9	39	9	39	y	0.20	5	20	5	20	y	0.20	9	36	9	36	y	0.04	1	25	1	25	n	0.17	5	25	5	25	y	0.18	8	37	8	37	y	0.22	8	29	8	29	y	0.24	9	29	9	29	y	ENSMUSG00000042211.8	Fbxo38	chr18	protein_coding	F-box protein 38
novel_NIR_9427	chr18	62653896	62654419	-	62653896	62655421	A5SS	ENSMUST00000048688.8	novel	0.22	6	21	6	21	y	0.07	1	13	1	13	n	0.07	2	25	2	25	n	0.00	0	21	0	21	n	0.00	0	33	0	33	n	0.04	1	25	1	25	n	0.00	0	34	0	34	n	0.14	3	18	3	18	n	0.21	4	15	4	15	y	0.00	0	34	0	34	n	0.00	0	18	0	18	n	0.03	1	31	1	31	n	ENSMUSG00000042211.8	Fbxo38	chr18	protein_coding	F-box protein 38
novel_NIR_9428	chr18	62674117	62674536	-	62674117	62677890	A5SS	ENSMUST00000235807.2	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000042211.8	Fbxo38	chr18	protein_coding	F-box protein 38
novel_NIR_9429	chr18	62674117	62681724	-	62674117	62677890	A5SS&ES	ENSMUST00000235807.2	novel	1.00	3	0	3	0	y	0.80	4	1	4	1	y	0.94	15	1	15	1	y	1.00	4	0	4	0	y	0.91	10	1	10	1	y	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	5	0	5	0	y	1.00	5	0	5	0	y	0.33	1	2	1	2	n	1.00	4	0	4	0	y	0.62	5	3	5	3	y	ENSMUSG00000042211.8	Fbxo38	chr18	protein_coding	F-box protein 38
novel_NIR_9430	chr18	62674117	62681724	-	62674117	62681683	A5SS	ENSMUST00000048688.8	novel	0.25	3	9	3	9	y	0.44	4	5	4	5	y	0.50	15	15	15	15	y	0.29	4	10	4	10	y	0.43	10	13	10	13	y	0.20	1	4	1	4	n	0.25	5	15	5	15	y	0.31	5	11	5	11	y	0.56	5	4	5	4	y	0.06	1	16	1	16	n	0.50	4	4	4	4	y	0.21	5	19	5	19	y	ENSMUSG00000042211.8	Fbxo38	chr18	protein_coding	F-box protein 38
novel_NIR_9431	chr18	63806945	63807120	-	63806937	63807120	A3SS	ENSMUST00000236892.2	novel	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	17	0	17	0	y	1.00	6	0	6	0	y	1.00	7	0	7	0	y	1.00	4	0	4	0	y	1.00	9	0	9	0	y	1.00	2	0	2	0	y	1.00	12	0	12	0	y	1.00	16	0	16	0	y	1.00	5	0	5	0	y	1.00	2	0	2	0	y	ENSMUSG00000024583.4	Txnl1	chr18	protein_coding	thioredoxin-like 1
novel_NIR_9432	chr18	63827339	63841515	-	63815378	63841515	A3SS	ENSMUST00000238061.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024583.4	Txnl1	chr18	protein_coding	thioredoxin-like 1
novel_NIR_9433	chr18	63827339	63841515	-	63817733	63841515	A3SS	ENSMUST00000237331.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024583.4	Txnl1	chr18	protein_coding	thioredoxin-like 1
novel_NIR_9434	chr18	63827339	63841515	-	63827339;63841234	63841190;63841515	ES	ENSMUST00000236253.2	novel	1.00	1	0.0	1	0;0	n	0.00	0	1.0	0	0;2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1.0	3	0;2	y	0.00	0	1.0	0	0;2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024583.4	Txnl1	chr18	protein_coding	thioredoxin-like 1
novel_NIR_9435	chr18	64351534	64410147	-	64303549	64410147	A3SS	ENSMUST00000237973.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000086128.9	St8sia3os	chr18	lncRNA	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3, opposite strand
novel_NIR_9436	chr18	64351534	64410147	-	64383216	64410147	A3SS&ES	ENSMUST00000127716.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000086128.9	St8sia3os	chr18	lncRNA	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3, opposite strand
novel_NIR_9437	chr18	64351534	64410147	-	64403026	64410147	3pMXE	ENSMUST00000123473.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000086128.9	St8sia3os	chr18	lncRNA	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3, opposite strand
novel_NIR_9438	chr18	64351534	64410147	-	64408440	64410147	A3SS&ES	ENSMUST00000140903.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000086128.9	St8sia3os	chr18	lncRNA	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3, opposite strand
novel_NIR_9439	chr18	64351534	64410147	-	64409404	64410147	3pMXE	ENSMUST00000124013.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000086128.9	St8sia3os	chr18	lncRNA	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3, opposite strand
novel_NIR_9440	chr18	64383216	64474327	-	64383216	64410147	5pMXE	ENSMUST00000127716.8	novel	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000086128.9	St8sia3os	chr18	lncRNA	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3, opposite strand
novel_NIR_9441	chr18	64383216	64474327	-	64383216	64466479	5pMXE	ENSMUST00000235475.2	novel	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000086128.9	St8sia3os	chr18	lncRNA	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3, opposite strand
novel_NIR_9442	chr18	6441912	6448905	-	6441243	6448905	A3SS	ENSMUST00000115870.9	novel	0.15	2	11	2	11	y	0.17	2	10	2	10	y	0.00	0	23	0	23	n	0.00	0	12	0	12	n	0.18	5	23	5	23	y	0.08	1	11	1	11	n	0.15	3	17	3	17	y	0.08	1	11	1	11	n	0.00	0	10	0	10	n	0.27	7	19	7	19	y	0.20	2	8	2	8	y	0.19	5	22	5	22	y	ENSMUSG00000024240.14	Epc1	chr18	protein_coding	enhancer of polycomb homolog 1
novel_NIR_9443	chr18	64608272	64611722	-	64608339	64611722	A3SS	ENSMUST00000237680.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000024588.11	Fech	chr18	protein_coding	ferrochelatase
novel_NIR_9444	chr18	64608272	64611722	-	64608371	64611722	A3SS	ENSMUST00000235215.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000024588.11	Fech	chr18	protein_coding	ferrochelatase
novel_NIR_9445	chr18	64611841	64612520	-	64611841	64612216	5pMXE	ENSMUST00000237717.2	novel	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.00	0	26	0	26	n	0.00	0	16	0	16	n	0.00	0	22	0	22	n	0.40	2	3	2	3	y	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.00	0	22	0	22	n	0.00	0	15	0	15	n	0.00	0	45	0	45	n	ENSMUSG00000024588.11	Fech	chr18	protein_coding	ferrochelatase
novel_NIR_9446	chr18	64611841	64612520	-	64611841	64621972	A5SS	ENSMUST00000235215.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000024588.11	Fech	chr18	protein_coding	ferrochelatase
novel_NIR_9447	chr18	64611841	64616384	-	64611841	64612216	5pMXE	ENSMUST00000237717.2	novel	0.12	1	7	1	7	n	0.00	0	15	0	15	n	0.00	0	26	0	26	n	0.00	0	16	0	16	n	0.19	5	22	5	22	y	0.00	0	3	0	3	n	0.13	2	13	2	13	n	0.25	4	12	4	12	y	0.00	0	16	0	16	n	0.00	0	22	0	22	n	0.00	0	15	0	15	n	0.04	2	45	2	45	n	ENSMUSG00000024588.11	Fech	chr18	protein_coding	ferrochelatase
novel_NIR_9448	chr18	64611841	64616384	-	64611841	64621972	A5SS	ENSMUST00000235215.2	novel	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	1.00	5	0	5	0	y	0.00	0	1	0	1	n	0.67	2	1	2	1	y	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000024588.11	Fech	chr18	protein_coding	ferrochelatase
novel_NIR_9449	chr18	64648476	64649558	-	64648479	64649558	A3SS	ENSMUST00000235325.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024587.11	Nars	chr18	protein_coding	asparaginyl-tRNA synthetase
novel_NIR_9450	chr18	65213142	65245576	+	65213142	65239510	3pMXE	ENSMUST00000223959.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024589.19	Nedd4l	chr18	protein_coding	neural precursor cell expressed, developmentally down-regulated gene 4-like
novel_NIR_9451	chr18	65267965	65276867	+	65217865	65276867	A5SS	ENSMUST00000238376.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024589.19	Nedd4l	chr18	protein_coding	neural precursor cell expressed, developmentally down-regulated gene 4-like
novel_NIR_9452	chr18	65300919	65305346	+	65298717	65305346	A5SS	ENSMUST00000236736.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	ENSMUSG00000024589.19	Nedd4l	chr18	protein_coding	neural precursor cell expressed, developmentally down-regulated gene 4-like
novel_NIR_9453	chr18	65301000	65305346	+	65298717	65305346	A5SS	ENSMUST00000236736.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000024589.19	Nedd4l	chr18	protein_coding	neural precursor cell expressed, developmentally down-regulated gene 4-like
novel_NIR_9454	chr18	65302836	65305346	+	65298717	65305346	A5SS	ENSMUST00000236736.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.75	3	1	3	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000024589.19	Nedd4l	chr18	protein_coding	neural precursor cell expressed, developmentally down-regulated gene 4-like
novel_NIR_9455	chr18	65586775	65589523	+	65586775	65589828	A3SS	ENSMUST00000224265.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000032688.10	Malt1	chr18	protein_coding	MALT1 paracaspase
novel_NIR_9456	chr18	65586775	65589523	+	65586775	65591240	A3SS	ENSMUST00000224056.3	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.50	2	2	2	2	y	ENSMUSG00000032688.10	Malt1	chr18	protein_coding	MALT1 paracaspase
novel_NIR_9457	chr18	65589906	65590639	+	65589906	65591240	A3SS	ENSMUST00000224265.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032688.10	Malt1	chr18	protein_coding	MALT1 paracaspase
novel_NIR_9458	chr18	65603609	65608204	+	65603609;65606228	65606071;65608204	ES	ENSMUST00000224056.3	novel	0.15	1	5.5	1	3;8	n	0.00	0	8.0	0	5;11	n	0.06	1	17.0	1	10;24	n	0.00	0	10.0	0	6;14	n	0.07	1	13.0	1	9;17	n	0.00	0	6.5	0	4;9	n	0.10	1	9.0	1	7;11	n	0.00	0	7.5	0	7;8	n	0.00	0	7.5	0	4;11	n	0.38	3	5.0	3	2;8	y	0.00	0	9.0	0	6;12	n	0.00	0	13.0	0	11;15	n	ENSMUSG00000032688.10	Malt1	chr18	protein_coding	MALT1 paracaspase
novel_NIR_9459	chr18	65716077	65724699	+	65716077	65732791	A3SS	ENSMUST00000183319.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000042439.14	Zfp532	chr18	protein_coding	zinc finger protein 532
novel_NIR_9460	chr18	65716077	65724699	+	65716077	65738403	A3SS	ENSMUST00000182140.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000042439.14	Zfp532	chr18	protein_coding	zinc finger protein 532
novel_NIR_9461	chr18	65716077	65724699	+	65716077	65756055	A3SS	ENSMUST00000235822.2	novel	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000042439.14	Zfp532	chr18	protein_coding	zinc finger protein 532
novel_NIR_9462	chr18	65758405	65768888	+	65758405	65771821	A3SS	ENSMUST00000235822.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000042439.14	Zfp532	chr18	protein_coding	zinc finger protein 532
novel_NIR_9463	chr18	65758405	65768888	+	65758405	65777264	A3SS	ENSMUST00000237756.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000042439.14	Zfp532	chr18	protein_coding	zinc finger protein 532
novel_NIR_9464	chr18	65758405	65768888	+	65758405	65815966	A3SS	ENSMUST00000049016.12	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000042439.14	Zfp532	chr18	protein_coding	zinc finger protein 532
novel_NIR_9465	chr18	65933782	65942528	+	65933782	65934522	A3SS&ES	ENSMUST00000153193.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	9	0	9	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000024516.14	Sec11c	chr18	protein_coding	SEC11 homolog C, signal peptidase complex subunit
novel_NIR_9466	chr18	65945812	65947911	+	65945812	65947909	A3SS	ENSMUST00000126432.9	novel	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.00	0	20	0	20	n	0.00	0	6	0	6	n	0.20	2	8	2	8	y	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.15	2	11	2	11	y	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000024516.14	Sec11c	chr18	protein_coding	SEC11 homolog C, signal peptidase complex subunit
novel_NIR_9467	chr18	65945832	65947909	+	65942625	65947909	A5SS	ENSMUST00000236847.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024516.14	Sec11c	chr18	protein_coding	SEC11 homolog C, signal peptidase complex subunit
novel_NIR_9468	chr18	65945832	65947909	+	65945812	65947909	A5SS	ENSMUST00000126432.9	novel	0.00	0	3	0	3	n	0.25	2	6	2	6	y	0.00	0	20	0	20	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000024516.14	Sec11c	chr18	protein_coding	SEC11 homolog C, signal peptidase complex subunit
novel_NIR_9469	chr18	65945832	65947909	+	65947134	65947909	5pMXE	ENSMUST00000126651.3	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024516.14	Sec11c	chr18	protein_coding	SEC11 homolog C, signal peptidase complex subunit
novel_NIR_9470	chr18	65945832	65947909	+	65947755	65947909	5pMXE	ENSMUST00000235765.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024516.14	Sec11c	chr18	protein_coding	SEC11 homolog C, signal peptidase complex subunit
novel_NIR_9471	chr18	66131791	66135012	-	66131791	66152736	A5SS	ENSMUST00000150133.3	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041891.17	Lman1	chr18	protein_coding	lectin, mannose-binding, 1
novel_NIR_9472	chr18	66131791	66135012	-	66131791	66155370	A5SS	ENSMUST00000143990.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041891.17	Lman1	chr18	protein_coding	lectin, mannose-binding, 1
novel_NIR_9473	chr18	66131791	66138285	-	66131791	66152736	A5SS	ENSMUST00000150133.3	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000041891.17	Lman1	chr18	protein_coding	lectin, mannose-binding, 1
novel_NIR_9474	chr18	66131791	66138285	-	66131791	66155370	A5SS	ENSMUST00000143990.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000041891.17	Lman1	chr18	protein_coding	lectin, mannose-binding, 1
novel_NIR_9475	chr18	67358950	67359854	-	67358955	67359854	A3SS	ENSMUST00000073054.5	novel	0.06	2	30	2	30	n	0.03	1	35	1	35	n	0.00	0	26	0	26	n	0.03	1	30	1	30	n	0.00	0	46	0	46	n	0.00	0	23	0	23	n	0.12	5	38	5	38	n	0.00	0	25	0	25	n	0.00	0	19	0	19	n	0.15	5	29	5	29	y	0.00	0	26	0	26	n	0.00	0	28	0	28	n	ENSMUSG00000062526.5	Mppe1	chr18	protein_coding	metallophosphoesterase 1
novel_NIR_9476	chr18	67360946	67361084	-	67360949	67361084	A3SS	ENSMUST00000073054.5	novel	0.43	13	17	13	17	y	0.31	4	9	4	9	y	0.78	14	4	14	4	y	0.72	23	9	23	9	y	0.63	22	13	22	13	y	0.61	17	11	17	11	y	0.50	17	17	17	17	y	0.47	8	9	8	9	y	0.60	12	8	12	8	y	0.48	11	12	11	12	y	0.56	9	7	9	7	y	0.62	13	8	13	8	y	ENSMUSG00000062526.5	Mppe1	chr18	protein_coding	metallophosphoesterase 1
novel_NIR_9477	chr18	67360946	67361084	-	67360995	67361084	A3SS	ENSMUST00000237279.2	novel	1.00	13	0	13	0	y	0.80	4	1	4	1	y	0.93	14	1	14	1	y	0.96	23	1	23	1	y	1.00	22	0	22	0	y	0.89	17	2	17	2	y	1.00	17	0	17	0	y	0.80	8	2	8	2	y	0.86	12	2	12	2	y	0.85	11	2	11	2	y	0.82	9	2	9	2	y	0.87	13	2	13	2	y	ENSMUSG00000062526.5	Mppe1	chr18	protein_coding	metallophosphoesterase 1
novel_NIR_9478	chr18	67366780	67377035	-	67366780;67370803	67370750;67377035	ES	ENSMUST00000237631.2	novel	0.26	3	8.5	3	0;17	y	0.00	0	7.5	0	0;15	n	0.00	0	12.0	0	0;24	n	0.00	0	14.5	0	0;29	n	0.00	0	9.5	0	0;19	n	0.00	0	9.0	0	0;18	n	0.00	0	12.5	0	0;25	n	0.00	0	12.0	0	0;24	n	0.00	0	6.0	0	0;12	n	0.00	0	8.5	0	0;17	n	0.00	0	9.5	0	0;19	n	0.27	2	5.5	2	0;11	y	ENSMUSG00000062526.5	Mppe1	chr18	protein_coding	metallophosphoesterase 1
novel_NIR_9479	chr18	67575920	67580639	-	67575920	67581958	A5SS	ENSMUST00000025408.10	novel	0.20	8	32	8	32	y	0.06	2	30	2	30	n	0.06	4	64	4	64	n	0.11	10	81	10	81	n	0.11	10	83	10	83	n	0.09	4	41	4	41	n	0.16	10	54	10	54	y	0.06	3	50	3	50	n	0.15	5	28	5	28	y	0.14	15	89	15	89	n	0.10	7	61	7	61	n	0.11	8	68	8	68	n	ENSMUSG00000024527.11	Afg3l2	chr18	protein_coding	AFG3-like AAA ATPase 2
novel_NIR_9480	chr18	67770395	67771336	-	67770433	67771336	A3SS	ENSMUST00000097542.4	novel	0.12	1	7	1	7	n	0.00	0	3	0	3	n	0.00	0	16	0	16	n	0.23	3	10	3	10	y	0.00	0	9	0	9	n	0.17	1	5	1	5	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	ENSMUSG00000073542.4	Cep76	chr18	protein_coding	centrosomal protein 76
novel_NIR_9481	chr18	67822059	67844907	-	67822059;67828794	67828694;67844907	ES	ENSMUST00000120934.8	novel	0.00	0	19.5	0	14;25	n	0.00	0	27.0	0	23;31	n	0.08	7	84.5	7	80;89	n	0.12	3	22.5	3	16;29	n	0.11	5	42.0	5	36;48	n	0.16	5	25.5	5	23;28	y	0.15	8	44.5	8	43;46	y	0.19	7	29.0	7	25;33	y	0.09	2	21.0	2	17;25	n	0.00	0	28.0	0	31;25	n	0.18	3	14.0	3	13;15	y	0.08	2	23.0	2	20;26	n	ENSMUSG00000024539.18	Ptpn2	chr18	protein_coding	protein tyrosine phosphatase, non-receptor type 2
novel_NIR_9482	chr18	67938353	67940328	+	67937564	67940328	A5SS	ENSMUST00000025425.7	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024542.10	Cep192	chr18	protein_coding	centrosomal protein 192
novel_NIR_9483	chr18	68011731	68013819	+	68011731	68013822	A3SS	ENSMUST00000025425.7	novel	0.25	1	3	1	3	n	-	-	-	-	-	-	0.67	6	3	6	3	y	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	1.00	7	0	7	0	y	1.00	4	0	4	0	y	ENSMUSG00000024542.10	Cep192	chr18	protein_coding	centrosomal protein 192
novel_NIR_9484	chr18	68066459	68138756	+	68066459	68197288	A3SS	ENSMUST00000063775.5	novel	1.00	2	0	2	0	n	1.00	2	0	2	0	y	0.75	3	1	3	1	n	-	-	-	-	-	-	1.00	3	0	3	0	n	1.00	2	0	2	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	n	1.00	2	0	2	0	n	-	-	-	-	-	-	ENSMUSG00000024544.10	Ldlrad4	chr18	protein_coding	low density lipoprotein receptor class A domain containing 4
novel_NIR_9485	chr18	68066459;68138844	68138756;68197288	+	68066459	68197288	cassetteExon	ENSMUST00000063775.5	novel	1.00	4.5	0	2;7	0	y	1.00	1.0	0	2;0	0	n	0.75	3.0	1	3;3	1	y	1.00	3.5	0	0;7	0	n	1.00	6.0	0	3;9	0	y	1.00	2.0	0	2;2	0	y	1.00	1.0	0	2;0	0	n	-	-	-	-	-	-	0.89	8.0	1	0;16	1	n	0.71	2.5	1	2;3	1	y	1.00	6.0	0	2;10	0	y	1.00	5.0	0	0;10	0	n	ENSMUSG00000024544.10	Ldlrad4	chr18	protein_coding	low density lipoprotein receptor class A domain containing 4
novel_NIR_9486	chr18	68067286	68197288	+	68066459	68197288	A5SS	ENSMUST00000063775.5	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000024544.10	Ldlrad4	chr18	protein_coding	low density lipoprotein receptor class A domain containing 4
novel_NIR_9487	chr18	68138844	68197288	+	68066459	68197288	A5SS	ENSMUST00000063775.5	novel	1.00	7	0	7	0	n	-	-	-	-	-	-	0.75	3	1	3	1	n	1.00	7	0	7	0	y	1.00	9	0	9	0	n	1.00	2	0	2	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.94	16	1	16	1	y	0.75	3	1	3	1	n	1.00	10	0	10	0	n	1.00	10	0	10	0	y	ENSMUSG00000024544.10	Ldlrad4	chr18	protein_coding	low density lipoprotein receptor class A domain containing 4
novel_NIR_9488	chr18	68303082	68368726	+	68361215	68368726	5pMXE	ENSMUST00000236987.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024544.10	Ldlrad4	chr18	protein_coding	low density lipoprotein receptor class A domain containing 4
novel_NIR_9489	chr18	68397297	68400832	+	68397297	68400991	A3SS	ENSMUST00000236987.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024544.10	Ldlrad4	chr18	protein_coding	low density lipoprotein receptor class A domain containing 4
novel_NIR_9490	chr18	68409336	68433145	-	68412499	68433145	A3SS&ES	ENSMUST00000152193.2	novel	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000038121.7	Fam210a	chr18	protein_coding	family with sequence similarity 210, member A
novel_NIR_9491	chr18	68412621	68433145	-	68412499	68433145	A3SS	ENSMUST00000152193.2	novel	0.50	4	4	4	4	y	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.14	1	6	1	6	n	0.33	2	4	2	4	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.12	1	7	1	7	n	0.17	1	5	1	5	n	0.33	2	4	2	4	y	0.60	3	2	3	2	y	-	-	-	-	-	-	ENSMUSG00000038121.7	Fam210a	chr18	protein_coding	family with sequence similarity 210, member A
novel_NIR_9492	chr18	69697755	69698541	+	69697755	69766648	A3SS	ENSMUST00000066717.12	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.15	2	11	2	11	y	ENSMUSG00000053477.19	Tcf4	chr18	protein_coding	transcription factor 4
novel_NIR_9493	chr18	69697755	69698541	+	69697755	69784293	A3SS	ENSMUST00000200902.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000053477.19	Tcf4	chr18	protein_coding	transcription factor 4
novel_NIR_9494	chr18	70058691	70071917	+	70058691	70069234	A3SS&ES	ENSMUST00000135428.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038903.14	Ccdc68	chr18	protein_coding	coiled-coil domain containing 68
novel_NIR_9495	chr18	70058691	70071917	+	70058691	70071913	A3SS	ENSMUST00000043929.11	novel	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038903.14	Ccdc68	chr18	protein_coding	coiled-coil domain containing 68
novel_NIR_9496	chr18	70600556	70600896	-	70600556	70600830	A5SS	ENSMUST00000067556.4	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000044906.7	4930503L19Rik	chr18	protein_coding	RIKEN cDNA 4930503L19 gene
novel_NIR_9497	chr18	70600556	70600896	-	70600556	70601292	A5SS	ENSMUST00000212074.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000044906.7	4930503L19Rik	chr18	protein_coding	RIKEN cDNA 4930503L19 gene
novel_NIR_9498	chr18	70600556	70600896	-	70600556	70602565	A5SS	ENSMUST00000211817.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000044906.7	4930503L19Rik	chr18	protein_coding	RIKEN cDNA 4930503L19 gene
novel_NIR_9499	chr18	70656470	70658415	-	70656470	70657802	A5SS	ENSMUST00000160713.2	novel	-	-	-	-	-	-	0.50	2	2	2	2	y	0.25	1	3	1	3	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000038425.19	Poli	chr18	protein_coding	polymerase (DNA directed), iota
novel_NIR_9500	chr18	70656470	70658415	-	70656470	70658447	A5SS	ENSMUST00000161542.8	novel	0.00	0	2	0	2	n	0.18	2	9	2	9	y	0.11	1	8	1	8	n	0.29	2	5	2	5	y	0.00	0	17	0	17	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.14	1	6	1	6	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	ENSMUSG00000038425.19	Poli	chr18	protein_coding	polymerase (DNA directed), iota
novel_NIR_9501	chr18	70657931	70658447	-	70656470	70658447	A3SS	ENSMUST00000161542.8	novel	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.15	3	17	3	17	y	0.00	0	7	0	7	n	0.11	1	8	1	8	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	ENSMUSG00000038425.19	Poli	chr18	protein_coding	polymerase (DNA directed), iota
novel_NIR_9502	chr18	70658599	70658904	-	70658599	70659628	A5SS	ENSMUST00000161542.8	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.17	2	10	2	10	y	ENSMUSG00000038425.19	Poli	chr18	protein_coding	polymerase (DNA directed), iota
novel_NIR_9503	chr18	70658599	70659593	-	70658599	70659628	A5SS	ENSMUST00000161542.8	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.12	1	7	1	7	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.25	2	6	2	6	y	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.00	0	10	0	10	n	ENSMUSG00000038425.19	Poli	chr18	protein_coding	polymerase (DNA directed), iota
novel_NIR_9504	chr18	70658599	70659635	-	70658599	70659628	A5SS	ENSMUST00000161542.8	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.22	2	7	2	7	y	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	ENSMUSG00000038425.19	Poli	chr18	protein_coding	polymerase (DNA directed), iota
novel_NIR_9505	chr18	70661895	70662822	-	70661898	70662822	A3SS	ENSMUST00000161542.8	novel	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	ENSMUSG00000038425.19	Poli	chr18	protein_coding	polymerase (DNA directed), iota
novel_NIR_9506	chr18	70661895	70663259	-	70661898	70663259	A3SS	ENSMUST00000121674.9	novel	0.00	0	4	0	4	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.50	3	3	3	3	y	0.20	1	4	1	4	n	ENSMUSG00000038425.19	Poli	chr18	protein_coding	polymerase (DNA directed), iota
novel_NIR_9507	chr18	7356235	7375757	-	7356235	7379989	A5SS	ENSMUST00000115869.4	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.14	1	6	1	6	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	1.00	2	0	2	0	y	ENSMUSG00000057440.9	Mpp7	chr18	protein_coding	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)
novel_NIR_9508	chr18	73774992	73781942	-	73774992	73775599	5pMXE	ENSMUST00000131339.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000024515.14	Smad4	chr18	protein_coding	SMAD family member 4
novel_NIR_9509	chr18	73872371	73873491	-	73872371	73875408	A5SS	ENSMUST00000041138.3	novel	0.00	0	5	0	5	n	0.44	4	5	4	5	y	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.14	1	6	1	6	n	0.00	0	17	0	17	n	0.33	2	4	2	4	y	0.00	0	12	0	12	n	ENSMUSG00000036941.3	Elac1	chr18	protein_coding	elaC ribonuclease Z 1
novel_NIR_9510	chr18	73872371	73874629	-	73872371	73875408	A5SS	ENSMUST00000041138.3	novel	0.38	3	5	3	5	y	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.29	2	5	2	5	n	0.21	3	11	3	11	n	0.43	3	4	3	4	y	0.12	1	7	1	7	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.06	1	17	1	17	n	0.00	0	4	0	4	n	0.08	1	12	1	12	n	ENSMUSG00000036941.3	Elac1	chr18	protein_coding	elaC ribonuclease Z 1
novel_NIR_9511	chr18	74193647	74197911	-	74104347	74197911	A3SS	ENSMUST00000091851.10	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000024558.13	Mapk4	chr18	protein_coding	mitogen-activated protein kinase 4
novel_NIR_9512	chr18	74352321	74352454	+	74352309	74352454	A5SS	ENSMUST00000025444.8	novel	0.10	8	72	8	72	n	0.09	9	88	9	88	n	0.21	31	114	31	114	y	0.15	15	82	15	82	y	0.13	14	96	14	96	n	0.15	12	69	12	69	y	0.13	16	103	16	103	n	0.00	0	63	0	63	n	0.16	15	76	15	76	y	0.10	12	105	12	105	n	0.17	14	66	14	66	y	0.08	9	104	9	104	n	ENSMUSG00000024560.8	Cxxc1	chr18	protein_coding	CXXC finger 1 (PHD domain)
novel_NIR_9513	chr18	74408488	74408978	+	74408488	74408975	A3SS	ENSMUST00000224047.2	novel	0.06	2	33	2	33	n	0.08	3	33	3	33	n	0.05	3	60	3	60	n	0.16	8	41	8	41	y	0.08	3	34	3	34	n	0.10	4	36	4	36	n	0.10	4	38	4	38	n	0.12	5	37	5	37	n	0.11	3	25	3	25	n	0.15	6	33	6	33	y	0.00	0	23	0	23	n	0.11	4	33	4	33	n	ENSMUSG00000024561.12	Mbd1	chr18	protein_coding	methyl-CpG binding domain protein 1
novel_NIR_9514	chr18	74408488	74408978	+	74408488	74409478	A3SS	ENSMUST00000239157.2	novel	0.08	2	23	2	23	n	0.08	3	34	3	34	n	0.06	3	48	3	48	n	0.23	8	27	8	27	y	0.07	3	39	3	39	n	0.13	4	26	4	26	n	0.15	4	23	4	23	y	0.15	5	29	5	29	y	0.18	3	14	3	14	y	0.17	6	29	6	29	y	0.00	0	22	0	22	n	0.18	4	18	4	18	y	ENSMUSG00000024561.12	Mbd1	chr18	protein_coding	methyl-CpG binding domain protein 1
novel_NIR_9515	chr18	74781042	74786431	+	74777263	74786431	A5SS	ENSMUST00000074157.13	novel	0.15	2	11	2	11	y	0.00	0	7	0	7	n	0.00	0	20	0	20	n	0.00	0	31	0	31	n	0.00	0	19	0	19	n	0.00	0	8	0	8	n	0.00	0	18	0	18	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	20	0	20	n	0.00	0	8	0	8	n	0.00	0	18	0	18	n	ENSMUSG00000025885.19	Myo5b	chr18	protein_coding	myosin VB
novel_NIR_9516	chr18	74809815	74810492	+	74809827	74810492	A5SS	ENSMUST00000074157.13	novel	0.00	0	15	0	15	n	0.17	2	10	2	10	y	0.00	0	13	0	13	n	0.00	0	24	0	24	n	0.00	0	39	0	39	n	0.00	0	11	0	11	n	0.00	0	25	0	25	n	0.00	0	19	0	19	n	0.00	0	8	0	8	n	0.00	0	40	0	40	n	0.00	0	10	0	10	n	0.00	0	20	0	20	n	ENSMUSG00000025885.19	Myo5b	chr18	protein_coding	myosin VB
novel_NIR_9517	chr18	74937226	74938934	+	74928338	74938934	A5SS	ENSMUST00000237306.2	novel	0.00	0	79	0	79	n	0.00	0	79	0	79	n	0.00	0	59	0	59	n	0.00	0	112	0	112	n	0.00	0	118	0	118	n	0.00	0	45	0	45	n	0.00	0	159	0	159	n	0.00	0	73	0	73	n	0.00	0	79	0	79	n	0.00	0	154	0	154	n	0.23	28	93	28	93	y	0.00	0	131	0	131	n	ENSMUSG00000036880.11	Acaa2	chr18	protein_coding	acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)
novel_NIR_9518	chr18	75139054	75141722	+	75138971	75141722	A5SS	ENSMUST00000236421.2	novel	0.37	23	40	23	40	y	0.23	10	34	10	34	y	0.05	3	53	3	53	n	0.33	20	40	20	40	y	0.26	17	49	17	49	y	0.17	8	39	8	39	y	0.31	26	59	26	59	y	0.29	11	27	11	27	y	0.41	20	29	20	29	y	0.36	29	52	29	52	y	0.38	19	31	19	31	y	0.32	19	40	19	40	y	ENSMUSG00000036299.6	BC031181	chr18	protein_coding	cDNA sequence BC031181
novel_NIR_9519	chr18	75139054	75141722	+	75139085	75141722	A5SS	ENSMUST00000040284.6	novel	0.15	23	127	23	127	y	0.08	10	123	10	123	n	0.02	3	135	3	135	n	0.12	20	146	20	146	n	0.08	17	204	17	204	n	0.06	8	118	8	118	n	0.12	26	190	26	190	n	0.08	11	120	11	120	n	0.15	20	114	20	114	y	0.13	29	196	29	196	n	0.12	19	145	19	145	n	0.11	19	148	19	148	n	ENSMUSG00000036299.6	BC031181	chr18	protein_coding	cDNA sequence BC031181
novel_NIR_9520	chr18	75139054	75141722	+	75139185	75141722	A5SS	ENSMUST00000237263.2	novel	0.26	23	64	23	64	y	0.17	10	50	10	50	y	0.03	3	96	3	96	n	0.19	20	83	20	83	y	0.14	17	101	17	101	n	0.12	8	56	8	56	n	0.19	26	110	26	110	y	0.15	11	64	11	64	y	0.23	20	67	20	67	y	0.27	29	80	29	80	y	0.20	19	75	19	75	y	0.24	19	59	19	59	y	ENSMUSG00000036299.6	BC031181	chr18	protein_coding	cDNA sequence BC031181
novel_NIR_9521	chr18	7561872	7607885	-	7561872	7608914	A5SS	ENSMUST00000234874.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000057440.9	Mpp7	chr18	protein_coding	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)
novel_NIR_9522	chr18	7561872	7607885	-	7561872	7626729	A5SS	ENSMUST00000235093.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000057440.9	Mpp7	chr18	protein_coding	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)
novel_NIR_9523	chr18	7561872	7607885	-	7561872	7626733	A5SS	ENSMUST00000115869.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.17	1	5	1	5	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000057440.9	Mpp7	chr18	protein_coding	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)
novel_NIR_9524	chr18	75653109	75654448	-	75653178	75654448	A3SS	ENSMUST00000165559.3	novel	0.29	2	5	2	5	y	0.25	4	12	4	12	y	0.29	9	22	9	22	y	0.32	9	19	9	19	y	0.43	12	16	12	16	y	0.44	12	15	12	15	y	0.69	9	4	9	4	y	0.33	6	12	6	12	y	0.11	1	8	1	8	n	0.39	9	14	9	14	y	0.08	1	12	1	12	n	0.90	9	1	9	1	y	ENSMUSG00000052928.10	Ctif	chr18	protein_coding	CBP80/20-dependent translation initiation factor
novel_NIR_9525	chr18	75770409	75799160	-	75770409	75830463	A5SS	ENSMUST00000165559.3	novel	0.75	3	1	3	1	y	0.88	7	1	7	1	y	0.69	9	4	9	4	y	0.85	11	2	11	2	y	1.00	13	0	13	0	y	0.83	5	1	5	1	y	0.70	7	3	7	3	y	1.00	10	0	10	0	y	1.00	4	0	4	0	y	0.86	6	1	6	1	y	1.00	5	0	5	0	y	0.75	3	1	3	1	y	ENSMUSG00000052928.10	Ctif	chr18	protein_coding	CBP80/20-dependent translation initiation factor
novel_NIR_9526	chr18	76027826	76033619	+	75953436	76033619	A5SS	ENSMUST00000058997.15	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	7	0	7	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	3	0	3	n	1.00	5	0	5	0	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.14	1	6	1	6	n	1.00	2	0	2	0	y	ENSMUSG00000044646.16	Zbtb7c	chr18	protein_coding	zinc finger and BTB domain containing 7C
novel_NIR_9527	chr18	76033832	76066148	+	76033832	76144700	A3SS	ENSMUST00000058997.15	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.67	2	1	2	1	y	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000044646.16	Zbtb7c	chr18	protein_coding	zinc finger and BTB domain containing 7C
novel_NIR_9528	chr18	76033832;76096274	76096195;76144700	+	76033832	76144700	cassetteExon	ENSMUST00000058997.15	novel	0.14	0.5	3	1;0	3	n	0.00	0.0	3	0;0	3	n	0.11	0.5	4	1;0	4	n	-	-	-	-	-	-	0.00	0.0	4	0;0	4	n	0.56	2.5	2	3;2	2	y	0.00	0.0	4	0;0	4	n	0.11	0.5	4	0;1	4	n	0.33	1.5	3	2;1	3	n	0.67	2.0	1	2;2	1	y	0.33	1.5	3	0;3	3	n	1.00	2.5	0	3;2	0	y	ENSMUSG00000044646.16	Zbtb7c	chr18	protein_coding	zinc finger and BTB domain containing 7C
novel_NIR_9529	chr18	76096274	76144700	+	76033832	76144700	A5SS	ENSMUST00000058997.15	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.50	2	2	2	2	n	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.25	1	3	1	3	n	0.67	2	1	2	1	n	0.50	3	3	3	3	y	1.00	2	0	2	0	n	ENSMUSG00000044646.16	Zbtb7c	chr18	protein_coding	zinc finger and BTB domain containing 7C
novel_NIR_9530	chr18	76144761	76228508	+	76144761	76269898	A3SS	ENSMUST00000058997.15	novel	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.12	1	7	1	7	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.60	3	2	3	2	y	0.00	0	1	0	1	n	ENSMUSG00000044646.16	Zbtb7c	chr18	protein_coding	zinc finger and BTB domain containing 7C
novel_NIR_9531	chr18	76421192	76422122	+	76421192	76422110	A3SS	ENSMUST00000168423.9	novel	0.00	0	35	0	35	n	0.00	0	20	0	20	n	0.00	0	40	0	40	n	0.00	0	24	0	24	n	0.00	0	37	0	37	n	0.00	0	21	0	21	n	0.15	4	23	4	23	y	0.00	0	18	0	18	n	0.00	0	18	0	18	n	0.00	0	36	0	36	n	0.00	0	21	0	21	n	0.00	0	38	0	38	n	ENSMUSG00000024563.17	Smad2	chr18	protein_coding	SMAD family member 2
novel_NIR_9532	chr18	76421192	76422122	+	76421192	76425981	A3SS	ENSMUST00000165084.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024563.17	Smad2	chr18	protein_coding	SMAD family member 2
novel_NIR_9533	chr18	77017912	77023552	+	77017912	77018320	A3SS&ES	ENSMUST00000136800.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	ENSMUSG00000090000.3	Ier3ip1	chr18	protein_coding	immediate early response 3 interacting protein 1
novel_NIR_9534	chr18	77038935	77042674	+	77042324	77042674	A5SS&ES	ENSMUST00000142456.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000117732.2	Gm50364	chr18	protein_coding	predicted gene, 50364
novel_NIR_9535	chr18	77040466	77042674	+	77042324	77042674	A5SS&ES	ENSMUST00000142456.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000117732.2	Gm50364	chr18	protein_coding	predicted gene, 50364
novel_NIR_9536	chr18	77044619	77054840	+	77044619	77048510	3pMXE	ENSMUST00000097521.12	novel	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000025421.16	Hdhd2	chr18	protein_coding	haloacid dehalogenase-like hydrolase domain containing 2
novel_NIR_9537	chr18	77730531	77730764	-	77723024	77730764	A3SS	ENSMUST00000074653.6	novel	0.00	0	5	0	5	n	0.11	1	8	1	8	n	0.00	0	12	0	12	n	0.16	3	16	3	16	y	0.20	1	4	1	4	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.06	1	17	1	17	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	ENSMUSG00000047466.11	8030462N17Rik	chr18	protein_coding	RIKEN cDNA 8030462N17 gene
novel_NIR_9538	chr18	77730890	77761596	-	77730890;77740992	77740825;77761596	ES	ENSMUST00000074653.6	novel	0.42	5	7.0	5	6;8	y	0.78	7	2.0	7	1;3	y	0.70	7	3.0	7	1;5	y	0.87	23	3.5	23	4;3	y	0.67	14	7.0	14	6;8	y	0.43	5	6.5	5	7;6	y	0.64	8	4.5	8	5;4	y	0.56	5	4.0	5	2;6	y	1.00	3	0.0	3	0;0	y	0.62	12	7.5	12	9;6	y	0.86	3	0.5	3	1;0	y	0.67	10	5.0	10	3;7	y	ENSMUSG00000047466.11	8030462N17Rik	chr18	protein_coding	RIKEN cDNA 8030462N17 gene
novel_NIR_9539	chr18	77849759	77851773	-	77849816	77851773	A3SS	ENSMUST00000236234.2	novel	0.00	0	23	0	23	n	0.00	0	17	0	17	n	0.24	4	13	4	13	y	0.00	0	29	0	29	n	0.00	0	15	0	15	n	0.00	0	14	0	14	n	0.00	0	31	0	31	n	0.00	0	15	0	15	n	0.00	0	15	0	15	n	0.00	0	33	0	33	n	0.00	0	27	0	27	n	0.00	0	30	0	30	n	ENSMUSG00000041840.9	Haus1	chr18	protein_coding	HAUS augmin-like complex, subunit 1
novel_NIR_9540	chr18	77851908	77852242	-	77851908	77854564	A5SS	ENSMUST00000236234.2	novel	0.00	0	14	0	14	n	0.00	0	14	0	14	n	0.17	3	15	3	15	y	0.00	0	24	0	24	n	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.17	4	20	4	20	y	0.00	0	9	0	9	n	0.00	0	16	0	16	n	0.00	0	23	0	23	n	0.00	0	18	0	18	n	0.03	1	32	1	32	n	ENSMUSG00000041840.9	Haus1	chr18	protein_coding	HAUS augmin-like complex, subunit 1
novel_NIR_9541	chr18	77856197	77857383	-	77856197	77861458	A5SS	ENSMUST00000236234.2	novel	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	6	0	6	0	y	0.00	0	1	0	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	0.83	5	1	5	1	n	1.00	1	0	1	0	n	0.67	4	2	4	2	y	ENSMUSG00000041840.9	Haus1	chr18	protein_coding	HAUS augmin-like complex, subunit 1
novel_NIR_9542	chr18	77856197;77857425	77857383;77861458	-	77856197	77861458	cassetteExon	ENSMUST00000236234.2	novel	1.00	2.0	0	4;0	0	n	1.00	1.0	0	2;0	0	n	1.00	3.0	0	6;0	0	n	0.00	0.0	1	0;0	1	n	1.00	1.5	0	3;0	0	n	-	-	-	-	-	-	1.00	1.5	0	3;0	0	n	-	-	-	-	-	-	1.00	2.5	0	5;0	0	n	0.78	3.5	1	5;2	1	y	1.00	0.5	0	1;0	0	n	0.50	2.0	2	4;0	2	n	ENSMUSG00000041840.9	Haus1	chr18	protein_coding	HAUS augmin-like complex, subunit 1
novel_NIR_9543	chr18	77860093	77861458	-	77856197	77861458	A3SS	ENSMUST00000236234.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000041840.9	Haus1	chr18	protein_coding	HAUS augmin-like complex, subunit 1
novel_NIR_9544	chr18	77998055	78000622	+	77998055;77999195	77999122;78000622	ES	ENSMUST00000044622.7	novel	0.00	0	7.5	0	5;10	n	0.00	0	2.0	0	0;4	n	0.10	1	9.0	1	9;9	n	0.31	2	4.5	2	4;5	y	0.00	0	12.5	0	7;18	n	0.00	0	6.0	0	3;9	n	0.00	0	13.5	0	14;13	n	0.00	0	4.0	0	6;2	n	0.15	1	5.5	1	6;5	n	0.00	0	9.5	0	8;11	n	0.00	0	5.5	0	5;6	n	0.00	0	13.0	0	14;12	n	ENSMUSG00000039840.9	Epg5	chr18	protein_coding	ectopic P-granules autophagy protein 5 homolog (C. elegans)
novel_NIR_9545	chr18	80145286	80180699	-	80174209	80180699	3pMXE	ENSMUST00000066743.11	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.30	3	7	3	7	y	ENSMUSG00000053950.11	Adnp2	chr18	protein_coding	ADNP homeobox 2
novel_NIR_9546	chr18	80185984	80194577	-	80185984	80194581	A5SS	ENSMUST00000066743.11	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.43	3	4	3	4	y	0.12	1	7	1	7	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	ENSMUSG00000053950.11	Adnp2	chr18	protein_coding	ADNP homeobox 2
novel_NIR_9547	chr18	80250116	80250373	+	80250116	80250445	A3SS	ENSMUST00000156400.9	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000024571.16	Gm16286	chr18	protein_coding	predicted gene 16286
novel_NIR_9548	chr18	80250558	80251288	+	80250558	80251325	A3SS	ENSMUST00000153363.3	novel	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.25	1	3	1	3	n	0.10	1	9	1	9	n	0.00	0	6	0	6	n	0.22	2	7	2	7	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	ENSMUSG00000024571.16	Gm16286	chr18	protein_coding	predicted gene 16286
novel_NIR_9549	chr18	80250558	80251291	+	80250558	80251325	A3SS	ENSMUST00000153363.3	novel	1.00	1	0	1	0	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000024571.16	Gm16286	chr18	protein_coding	predicted gene 16286
novel_NIR_9550	chr18	80253345	80261919	+	80250558	80261919	A5SS	ENSMUST00000145963.9	novel	0.18	15	67	15	67	n	0.18	16	75	16	75	y	0.11	11	93	11	93	n	0.10	10	94	10	94	n	0.19	18	79	18	79	y	0.07	3	41	3	41	n	0.23	25	86	25	86	y	0.14	7	42	7	42	n	0.13	10	66	10	66	n	0.15	12	68	12	68	y	0.20	22	88	22	88	y	0.16	12	65	12	65	y	ENSMUSG00000057130.13	Txnl4a	chr18	protein_coding	thioredoxin-like 4A
novel_NIR_9551	chr18	80253345	80261919	+	80258791	80261919	5pMXE	ENSMUST00000130675.2	novel	0.83	15	3	15	3	y	0.80	16	4	16	4	y	1.00	11	0	11	0	y	0.53	10	9	10	9	y	0.82	18	4	18	4	y	1.00	3	0	3	0	y	0.86	25	4	25	4	y	1.00	7	0	7	0	y	0.62	10	6	10	6	y	0.60	12	8	12	8	y	0.71	22	9	22	9	y	0.75	12	4	12	4	y	ENSMUSG00000057130.13	Txnl4a	chr18	protein_coding	thioredoxin-like 4A
novel_NIR_9552	chr18	80255021	80261919	+	80258791	80261919	5pMXE	ENSMUST00000130675.2	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.18	2	9	2	9	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.20	1	4	1	4	n	ENSMUSG00000057130.13	Txnl4a	chr18	protein_coding	thioredoxin-like 4A
novel_NIR_9553	chr18	80255094	80261919	+	80258791	80261919	5pMXE	ENSMUST00000130675.2	novel	0.57	4	3	4	3	y	0.43	3	4	3	4	y	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.33	2	4	2	4	y	1.00	1	0	1	0	n	0.14	1	6	1	6	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	ENSMUSG00000057130.13	Txnl4a	chr18	protein_coding	thioredoxin-like 4A
novel_NIR_9554	chr18	80258684	80261919	+	80258791	80261919	A5SS	ENSMUST00000130675.2	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.43	3	4	3	4	y	1.00	1	0	1	0	n	0.00	0	6	0	6	n	0.11	1	8	1	8	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	ENSMUSG00000057130.13	Txnl4a	chr18	protein_coding	thioredoxin-like 4A
novel_NIR_9555	chr18	80296608	80297560	+	80296608	80298587	A3SS	ENSMUST00000157056.8	novel	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.25	3	9	3	9	n	0.00	0	2	0	2	n	0.75	3	1	3	1	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000034006.18	Slc66a2	chr18	protein_coding	solute carrier family 66 member 2
novel_NIR_9556	chr18	80296608	80297818	+	80296608	80298587	A3SS	ENSMUST00000157056.8	novel	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000034006.18	Slc66a2	chr18	protein_coding	solute carrier family 66 member 2
novel_NIR_9557	chr18	80296608;80298038	80297560;80298587	+	80296608	80298587	cassetteExon	ENSMUST00000157056.8	novel	0.20	0.5	2	0;1	2	n	0.00	0.0	9	0;0	9	n	0.00	0.0	2	0;0	2	n	0.14	0.5	3	1;0	3	n	0.33	4.5	9	3;6	9	y	0.33	1.0	2	0;2	2	n	0.60	1.5	1	3;0	1	n	0.09	0.5	5	0;1	5	n	0.00	0.0	2	0;0	2	n	0.33	1.0	2	0;2	2	n	0.60	1.5	1	0;3	1	n	0.00	0.0	2	0;0	2	n	ENSMUSG00000034006.18	Slc66a2	chr18	protein_coding	solute carrier family 66 member 2
novel_NIR_9558	chr18	80298038	80298587	+	80296608	80298587	A5SS	ENSMUST00000157056.8	novel	0.33	1	2	1	2	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.40	6	9	6	9	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.75	3	1	3	1	y	0.00	0	2	0	2	n	ENSMUSG00000034006.18	Slc66a2	chr18	protein_coding	solute carrier family 66 member 2
novel_NIR_9559	chr18	80298038	80298587	+	80297690	80298587	A5SS	ENSMUST00000131780.8	novel	0.25	1	3	1	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.40	6	9	6	9	n	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.60	3	2	3	2	y	0.00	0	2	0	2	n	ENSMUSG00000034006.18	Slc66a2	chr18	protein_coding	solute carrier family 66 member 2
novel_NIR_9560	chr18	80463845	80489101	-	80463845;80477543	80477381;80489101	ES	ENSMUST00000036229.13	novel	0.00	0	19.5	0	22;17	n	0.00	0	21.5	0	20;23	n	0.03	1	38.0	1	46;30	n	0.06	1	16.5	1	17;16	n	0.00	0	29.5	0	29;30	n	0.07	1	13.5	1	14;13	n	0.15	4	23.5	4	22;25	y	0.00	0	11.0	0	8;14	n	0.05	1	17.5	1	15;20	n	0.04	1	25.0	1	25;25	n	0.04	1	26.5	1	27;26	n	0.00	0	22.5	0	24;21	n	ENSMUSG00000033323.15	Ctdp1	chr18	protein_coding	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1
novel_NIR_9561	chr18	80838647	80887742	-	80838647	80977039	A5SS	ENSMUST00000226064.2	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024566.11	Atp9b	chr18	protein_coding	ATPase, class II, type 9B
novel_NIR_9562	chr18	80838647	80887742	-	80838647;80879646	80879570;80887742	ES	ENSMUST00000223926.2	novel	0.12	1	7.5	1	0;15	n	0.20	2	8.0	2	0;16	y	0.00	0	26.0	0	1;51	n	0.00	0	17.0	0	0;34	n	0.07	1	14.0	1	1;27	n	0.00	0	6.5	0	2;11	n	0.06	1	14.5	1	0;29	n	0.00	0	13.0	0	0;26	n	0.00	0	11.5	0	0;23	n	0.10	2	19.0	2	0;38	n	0.00	0	11.0	0	0;22	n	0.00	0	14.0	0	0;28	n	ENSMUSG00000024566.11	Atp9b	chr18	protein_coding	ATPase, class II, type 9B
novel_NIR_9563	chr18	80887035	80887742	-	80851987	80887742	A3SS	ENSMUST00000225235.2	novel	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.25	2	6	2	6	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000024566.11	Atp9b	chr18	protein_coding	ATPase, class II, type 9B
novel_NIR_9564	chr18	80920588	80934394	-	80920588	80952807	A5SS	ENSMUST00000224709.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	ENSMUSG00000024566.11	Atp9b	chr18	protein_coding	ATPase, class II, type 9B
novel_NIR_9565	chr18	82627600	82635831	-	82627600	82628730	A5SS&ES	ENSMUST00000183324.8	novel	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.43	3	4	3	4	y	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.25	1	3	1	3	n	ENSMUSG00000041258.19	Zfp236	chr18	protein_coding	zinc finger protein 236
novel_NIR_9566	chr18	82627600	82635831	-	82627600	82635835	A5SS	ENSMUST00000171071.9	novel	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	30	0	30	n	0.00	0	9	0	9	n	0.17	3	15	3	15	y	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.05	1	18	1	18	n	ENSMUSG00000041258.19	Zfp236	chr18	protein_coding	zinc finger protein 236
novel_NIR_9567	chr18	82686523	82686697	-	82676331	82686697	A3SS	ENSMUST00000171071.9	novel	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000041258.19	Zfp236	chr18	protein_coding	zinc finger protein 236
novel_NIR_9568	chr18	82686523	82686697	-	82683106	82686697	A3SS	ENSMUST00000182122.8	novel	0.22	2	7	2	7	y	0.29	2	5	2	5	y	0.12	1	7	1	7	n	0.00	0	6	0	6	n	0.10	1	9	1	9	n	0.00	0	2	0	2	n	0.09	1	10	1	10	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.25	2	6	2	6	y	0.22	2	7	2	7	y	0.12	1	7	1	7	n	ENSMUSG00000041258.19	Zfp236	chr18	protein_coding	zinc finger protein 236
novel_NIR_9569	chr18	82689935	82692437	-	82689935	82692432	A5SS	ENSMUST00000171071.9	novel	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	22	0	22	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.19	4	17	4	17	y	0.00	0	19	0	19	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	ENSMUSG00000041258.19	Zfp236	chr18	protein_coding	zinc finger protein 236
novel_NIR_9570	chr18	82700412	82703362	-	82700412	82701689	5pMXE	ENSMUST00000225002.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.33	1	2	1	2	n	ENSMUSG00000041258.19	Zfp236	chr18	protein_coding	zinc finger protein 236
novel_NIR_9571	chr18	82700412	82703362	-	82700412	82709703	A5SS	ENSMUST00000182866.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000041258.19	Zfp236	chr18	protein_coding	zinc finger protein 236
novel_NIR_9572	chr18	82700412	82703362	-	82700412	82710768	A5SS	ENSMUST00000171071.9	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	ENSMUSG00000041258.19	Zfp236	chr18	protein_coding	zinc finger protein 236
novel_NIR_9573	chr18	82700412	82711487	-	82700412	82701689	5pMXE	ENSMUST00000225002.2	novel	0.50	2	2	2	2	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000041258.19	Zfp236	chr18	protein_coding	zinc finger protein 236
novel_NIR_9574	chr18	82700412	82711487	-	82700412	82709703	5pMXE	ENSMUST00000182866.3	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041258.19	Zfp236	chr18	protein_coding	zinc finger protein 236
novel_NIR_9575	chr18	82700412	82711487	-	82700412	82710768	5pMXE	ENSMUST00000171071.9	novel	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000041258.19	Zfp236	chr18	protein_coding	zinc finger protein 236
novel_NIR_9576	chr18	82700412	82711603	-	82700412	82701689	5pMXE	ENSMUST00000225002.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.33	1	2	1	2	n	ENSMUSG00000041258.19	Zfp236	chr18	protein_coding	zinc finger protein 236
novel_NIR_9577	chr18	82700412	82711603	-	82700412	82709703	5pMXE	ENSMUST00000182866.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000041258.19	Zfp236	chr18	protein_coding	zinc finger protein 236
novel_NIR_9578	chr18	82700412	82711603	-	82700412	82710768	5pMXE	ENSMUST00000171071.9	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	2	4	2	4	y	0.25	1	3	1	3	n	0.60	3	2	3	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	ENSMUSG00000041258.19	Zfp236	chr18	protein_coding	zinc finger protein 236
novel_NIR_9579	chr18	82700412	82711673	-	82700412	82701689	5pMXE	ENSMUST00000225002.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	ENSMUSG00000041258.19	Zfp236	chr18	protein_coding	zinc finger protein 236
novel_NIR_9580	chr18	82700412	82711673	-	82700412	82709703	5pMXE	ENSMUST00000182866.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000041258.19	Zfp236	chr18	protein_coding	zinc finger protein 236
novel_NIR_9581	chr18	82700412	82711673	-	82700412	82710768	5pMXE	ENSMUST00000171071.9	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	2	2	2	2	y	ENSMUSG00000041258.19	Zfp236	chr18	protein_coding	zinc finger protein 236
novel_NIR_9582	chr18	82703464	82709703	-	82700412	82709703	A3SS	ENSMUST00000182866.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041258.19	Zfp236	chr18	protein_coding	zinc finger protein 236
novel_NIR_9583	chr18	84034366	84084933	-	84034366	84103145	A5SS	ENSMUST00000235188.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000046982.12	Tshz1	chr18	protein_coding	teashirt zinc finger family member 1
novel_NIR_9584	chr18	84034366	84084933	-	84034366	84103489	A5SS	ENSMUST00000060303.10	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.20	2	8	2	8	y	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	ENSMUSG00000046982.12	Tshz1	chr18	protein_coding	teashirt zinc finger family member 1
novel_NIR_9585	chr18	84034366	84084933	-	84034366	84104140	A5SS	ENSMUST00000175783.3	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000046982.12	Tshz1	chr18	protein_coding	teashirt zinc finger family member 1
novel_NIR_9586	chr18	84034366	84084933	-	84034366	84105743	A5SS	ENSMUST00000237918.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000046982.12	Tshz1	chr18	protein_coding	teashirt zinc finger family member 1
novel_NIR_9587	chr18	84644015	84645103	+	84644015	84646908	A3SS	ENSMUST00000236074.2	novel	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	0.14	1	6	1	6	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000117676.2	Gm50314	chr18	lncRNA	predicted gene, 50314
novel_NIR_9588	chr18	84867548	84889630	+	84858339	84889630	A5SS	ENSMUST00000235725.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024646.15	Cyb5a	chr18	protein_coding	cytochrome b5 type A (microsomal)
novel_NIR_9589	chr18	84867548	84889630	+	84870125	84889630	5pMXE	ENSMUST00000163083.2	novel	0.00	0	2	0	2	n	0.00	0	10	0	10	n	1.00	2	0	2	0	y	0.00	0	6	0	6	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	ENSMUSG00000024646.15	Cyb5a	chr18	protein_coding	cytochrome b5 type A (microsomal)
novel_NIR_9590	chr18	84869983	84889630	+	84858339	84889630	A5SS	ENSMUST00000235725.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.80	4	1	4	1	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	ENSMUSG00000024646.15	Cyb5a	chr18	protein_coding	cytochrome b5 type A (microsomal)
novel_NIR_9591	chr18	84869983	84889630	+	84870125	84889630	5pMXE	ENSMUST00000163083.2	novel	0.00	0	2	0	2	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.40	4	6	4	6	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.19	3	13	3	13	y	0.00	0	3	0	3	n	0.40	4	6	4	6	y	0.00	0	15	0	15	n	0.11	1	8	1	8	n	0.67	4	2	4	2	y	ENSMUSG00000024646.15	Cyb5a	chr18	protein_coding	cytochrome b5 type A (microsomal)
novel_NIR_9592	chr18	84869983	84889630	+	84887841	84889630	A5SS&ES	ENSMUST00000236742.2	novel	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.24	4	13	4	13	y	0.00	0	6	0	6	n	-	-	-	-	-	-	0.17	3	15	3	15	y	0.00	0	6	0	6	n	0.25	4	12	4	12	y	0.00	0	20	0	20	n	0.03	1	28	1	28	n	0.21	4	15	4	15	y	ENSMUSG00000024646.15	Cyb5a	chr18	protein_coding	cytochrome b5 type A (microsomal)
novel_NIR_9593	chr18	84870455	84889630	+	84858339	84889630	A5SS	ENSMUST00000235725.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000024646.15	Cyb5a	chr18	protein_coding	cytochrome b5 type A (microsomal)
novel_NIR_9594	chr18	84870455	84889630	+	84870125	84889630	A5SS	ENSMUST00000163083.2	novel	0.00	0	2	0	2	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.14	1	6	1	6	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.20	2	8	2	8	y	0.00	0	2	0	2	n	ENSMUSG00000024646.15	Cyb5a	chr18	protein_coding	cytochrome b5 type A (microsomal)
novel_NIR_9595	chr18	84872715	84889630	+	84858339	84889630	A5SS	ENSMUST00000235725.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000024646.15	Cyb5a	chr18	protein_coding	cytochrome b5 type A (microsomal)
novel_NIR_9596	chr18	84872715	84889630	+	84870125	84889630	A5SS	ENSMUST00000163083.2	novel	0.00	0	2	0	2	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.21	4	15	4	15	y	0.27	3	8	3	8	y	0.00	0	2	0	2	n	ENSMUSG00000024646.15	Cyb5a	chr18	protein_coding	cytochrome b5 type A (microsomal)
novel_NIR_9597	chr18	84872715	84889630	+	84887841	84889630	A5SS&ES	ENSMUST00000236742.2	novel	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.17	4	20	4	20	y	0.10	3	28	3	28	n	0.00	0	15	0	15	n	ENSMUSG00000024646.15	Cyb5a	chr18	protein_coding	cytochrome b5 type A (microsomal)
novel_NIR_9598	chr18	84876247	84889630	+	84858339	84889630	A5SS	ENSMUST00000235725.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024646.15	Cyb5a	chr18	protein_coding	cytochrome b5 type A (microsomal)
novel_NIR_9599	chr18	84876247	84889630	+	84887314	84889630	A5SS&ES	ENSMUST00000235254.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024646.15	Cyb5a	chr18	protein_coding	cytochrome b5 type A (microsomal)
novel_NIR_9600	chr18	84886417	84889630	+	84858339	84889630	A5SS	ENSMUST00000235725.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024646.15	Cyb5a	chr18	protein_coding	cytochrome b5 type A (microsomal)
novel_NIR_9601	chr18	84886417	84889630	+	84870125	84889630	A5SS	ENSMUST00000163083.2	novel	0.00	0	2	0	2	n	0.23	3	10	3	10	y	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	ENSMUSG00000024646.15	Cyb5a	chr18	protein_coding	cytochrome b5 type A (microsomal)
novel_NIR_9602	chr18	84886417	84889630	+	84887314	84889630	A5SS&ES	ENSMUST00000235254.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024646.15	Cyb5a	chr18	protein_coding	cytochrome b5 type A (microsomal)
novel_NIR_9603	chr18	84886417	84889630	+	84887841	84889630	A5SS&ES	ENSMUST00000236742.2	novel	0.00	0	18	0	18	n	0.19	3	13	3	13	y	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	20	0	20	n	0.00	0	28	0	28	n	0.00	0	15	0	15	n	ENSMUSG00000024646.15	Cyb5a	chr18	protein_coding	cytochrome b5 type A (microsomal)
novel_NIR_9604	chr18	84891334	84895952	+	84894977	84895952	A5SS&ES	ENSMUST00000025549.14	novel	1.00	4	0	4	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	6	0	6	0	y	0.29	2	5	2	5	y	1.00	8	0	8	0	y	ENSMUSG00000024646.15	Cyb5a	chr18	protein_coding	cytochrome b5 type A (microsomal)
novel_NIR_9605	chr18	84893224	84895952	+	84894977	84895952	A5SS&ES	ENSMUST00000025549.14	novel	1.00	5	0	5	0	y	0.71	5	2	5	2	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.17	1	5	1	5	n	1.00	3	0	3	0	n	ENSMUSG00000024646.15	Cyb5a	chr18	protein_coding	cytochrome b5 type A (microsomal)
novel_NIR_9606	chr18	88889042	88912286	-	88889042	88905333	5pMXE	ENSMUST00000236108.2	novel	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.30	3	7	3	7	y	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	ENSMUSG00000056153.16	Socs6	chr18	protein_coding	suppressor of cytokine signaling 6
novel_NIR_9607	chr18	88889042	88912286	-	88889042;88905457	88905333;88912286	ES	ENSMUST00000070116.12	novel	0.00	0	5.0	0	6;4	n	0.00	0	5.5	0	4;7	n	0.00	0	15.5	0	12;19	n	0.00	0	6.0	0	4;8	n	0.00	0	11.0	0	5;17	n	0.00	0	8.0	0	8;8	n	0.21	3	11.0	3	7;15	y	0.00	0	10.5	0	7;14	n	0.00	0	8.0	0	7;9	n	0.00	0	10.0	0	11;9	n	0.00	0	2.5	0	3;2	n	0.00	0	8.5	0	7;10	n	ENSMUSG00000056153.16	Socs6	chr18	protein_coding	suppressor of cytokine signaling 6
novel_NIR_9608	chr18	88889042	88912286	-	88889042;88905457	88905337;88912286	ES	ENSMUST00000123826.2	novel	0.00	0	2.0	0	0;4	n	0.00	0	4.5	0	2;7	n	0.00	0	11.5	0	4;19	n	0.00	0	4.0	0	0;8	n	0.00	0	9.5	0	2;17	n	0.00	0	4.0	0	0;8	n	0.25	3	9.0	3	3;15	y	0.00	0	8.5	0	3;14	n	0.00	0	5.5	0	2;9	n	0.00	0	4.5	0	0;9	n	0.00	0	2.0	0	2;2	n	0.00	0	8.0	0	6;10	n	ENSMUSG00000056153.16	Socs6	chr18	protein_coding	suppressor of cytokine signaling 6
novel_NIR_9609	chr18	88889042	88912286	-	88905457	88912286	A3SS&ES	ENSMUST00000136173.8	novel	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	19	0	19	n	0.00	0	8	0	8	n	0.00	0	17	0	17	n	0.00	0	8	0	8	n	0.17	3	15	3	15	y	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	ENSMUSG00000056153.16	Socs6	chr18	protein_coding	suppressor of cytokine signaling 6
novel_NIR_9610	chr18	90598023	90603413	+	90598023	90607080	A3SS	ENSMUST00000211710.2	novel	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.23	5	17	5	17	y	0.00	0	7	0	7	n	0.00	0	19	0	19	n	0.08	1	12	1	12	n	0.00	0	9	0	9	n	0.23	3	10	3	10	y	0.00	0	10	0	10	n	0.00	0	11	0	11	n	ENSMUSG00000110277.3	Gm45871	chr18	protein_coding	predicted gene 45871
novel_NIR_9611	chr18	9377324	9377794	-	9345471	9377794	A3SS	ENSMUST00000234844.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	7	0	7	0	y	1.00	4	0	4	0	y	1.00	8	0	8	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	ENSMUSG00000024286.9	Ccny	chr18	protein_coding	cyclin Y
novel_NIR_9612	chr19	10031713	10031911	+	10031713	10031970	A3SS	ENSMUST00000115995.4	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.14	1	6	1	6	n	0.00	0	2	0	2	n	0.00	0	13	0	13	n	0.22	2	7	2	7	y	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000024664.6	Fads3	chr19	protein_coding	fatty acid desaturase 3
novel_NIR_9613	chr19	10047988	10066066	-	10047988	10048443	5pMXE	ENSMUST00000238023.2	novel	0.00	0	6	0	6	n	0.17	1	5	1	5	n	0.00	0	10	0	10	n	0.15	2	11	2	11	y	0.00	0	13	0	13	n	0.25	1	3	1	3	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.38	3	5	3	5	y	0.11	1	8	1	8	n	-	-	-	-	-	-	0.00	0	7	0	7	n	ENSMUSG00000024665.9	Fads2	chr19	protein_coding	fatty acid desaturase 2
novel_NIR_9614	chr19	10161888	10162291	+	10161073	10162291	A5SS	ENSMUST00000236594.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.17	1	5	1	5	n	-	-	-	-	-	-	0.11	1	8	1	8	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.17	1	5	1	5	n	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000010663.6	Fads1	chr19	protein_coding	fatty acid desaturase 1
novel_NIR_9615	chr19	10162130	10162291	+	10161073	10162291	A5SS	ENSMUST00000236594.2	novel	1.00	8	0	8	0	y	1.00	5	0	5	0	y	0.67	10	5	10	5	y	1.00	12	0	12	0	y	0.67	16	8	16	8	y	0.64	14	8	14	8	y	0.89	17	2	17	2	y	0.92	12	1	12	1	y	0.86	6	1	6	1	y	0.76	16	5	16	5	y	1.00	6	0	6	0	y	0.80	4	1	4	1	y	ENSMUSG00000010663.6	Fads1	chr19	protein_coding	fatty acid desaturase 1
novel_NIR_9616	chr19	10162475	10163049	+	10160628	10163049	A5SS	ENSMUST00000235160.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.33	1	2	1	2	n	ENSMUSG00000010663.6	Fads1	chr19	protein_coding	fatty acid desaturase 1
novel_NIR_9617	chr19	10181628	10183791	+	10181628	10183114	A3SS&ES	ENSMUST00000153854.8	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.62	5	3	5	3	y	0.00	0	2	0	2	n	0.80	4	1	4	1	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000036372.15	Tmem258	chr19	protein_coding	transmembrane protein 258
novel_NIR_9618	chr19	10183182	10183788	+	10183488	10183788	A5SS	ENSMUST00000153854.8	novel	0.60	6	4	6	4	y	0.45	5	6	5	6	y	0.42	5	7	5	7	y	0.50	1	1	1	1	n	0.20	2	8	2	8	y	0.42	5	7	5	7	y	0.50	5	5	5	5	y	0.36	4	7	4	7	y	1.00	2	0	2	0	y	0.85	11	2	11	2	y	1.00	3	0	3	0	y	0.55	6	5	6	5	y	ENSMUSG00000036372.15	Tmem258	chr19	protein_coding	transmembrane protein 258
novel_NIR_9619	chr19	10183488	10183701	+	10183488	10183788	A3SS	ENSMUST00000153854.8	novel	0.33	2	4	2	4	y	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000036372.15	Tmem258	chr19	protein_coding	transmembrane protein 258
novel_NIR_9620	chr19	10202874	10206384	-	10200931	10206384	A3SS	ENSMUST00000186056.7	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	7	0	7	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000036098.16	Myrf	chr19	protein_coding	myelin regulatory factor
novel_NIR_9621	chr19	10202874	10206384	-	10202874;10206280	10206017;10206384	ES	ENSMUST00000088013.12	novel	0.24	2	6.5	2	5;8	y	0.00	0	7.0	0	4;10	n	0.05	1	20.5	1	15;26	n	0.00	0	17.0	0	17;17	n	0.00	0	28.0	0	19;37	n	0.17	2	10.0	2	7;13	y	0.00	0	11.0	0	12;10	n	0.08	1	12.0	1	11;13	n	0.13	1	6.5	1	7;6	n	0.31	7	15.5	7	17;14	y	0.17	2	10.0	2	10;10	y	0.06	1	14.5	1	13;16	n	ENSMUSG00000036098.16	Myrf	chr19	protein_coding	myelin regulatory factor
novel_NIR_9622	chr19	10202874	10206384	-	10206280	10206384	3pMXE	ENSMUST00000189439.2	novel	0.20	2	8	2	8	y	0.00	0	10	0	10	n	0.04	1	26	1	26	n	0.00	0	17	0	17	n	0.00	0	37	0	37	n	0.13	2	13	2	13	n	0.00	0	10	0	10	n	0.07	1	13	1	13	n	0.14	1	6	1	6	n	0.33	7	14	7	14	y	0.17	2	10	2	10	y	0.06	1	16	1	16	n	ENSMUSG00000036098.16	Myrf	chr19	protein_coding	myelin regulatory factor
novel_NIR_9623	chr19	10248995	10250978	-	10248995	10282185	A5SS	ENSMUST00000039327.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035735.11	Dagla	chr19	protein_coding	diacylglycerol lipase, alpha
novel_NIR_9624	chr19	10480490	10494344	-	10482889	10494344	A3SS&ES	ENSMUST00000237827.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	6	0	6	0	y	ENSMUSG00000024668.9	Sdhaf2	chr19	protein_coding	succinate dehydrogenase complex assembly factor 2
novel_NIR_9625	chr19	10498400	10502423	-	10498422	10502423	A3SS	ENSMUST00000235853.2	novel	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.25	1	3	1	3	n	0.12	1	7	1	7	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000024668.9	Sdhaf2	chr19	protein_coding	succinate dehydrogenase complex assembly factor 2
novel_NIR_9626	chr19	10498400	10502423	-	10501361	10502423	A3SS&ES	ENSMUST00000237847.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024668.9	Sdhaf2	chr19	protein_coding	succinate dehydrogenase complex assembly factor 2
novel_NIR_9627	chr19	10581637	10581803	-	10581637	10582305	A5SS	ENSMUST00000236478.2	novel	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.11	1	8	1	8	n	0.33	2	4	2	4	y	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	ENSMUSG00000034371.10	Tkfc	chr19	protein_coding	triokinase, FMN cyclase
novel_NIR_9628	chr19	10581637	10581803	-	10581637	10582583	A5SS	ENSMUST00000236950.2	novel	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.33	1	2	1	2	n	0.33	2	4	2	4	y	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	ENSMUSG00000034371.10	Tkfc	chr19	protein_coding	triokinase, FMN cyclase
novel_NIR_9629	chr19	10581637	10581803	-	10581637	10582773	A5SS	ENSMUST00000237788.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.29	2	5	2	5	y	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	ENSMUSG00000034371.10	Tkfc	chr19	protein_coding	triokinase, FMN cyclase
novel_NIR_9630	chr19	10581637	10581894	-	10581637	10582305	A5SS	ENSMUST00000236478.2	novel	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.12	1	7	1	7	n	0.00	0	8	0	8	n	0.20	1	4	1	4	n	0.21	3	11	3	11	y	0.00	0	8	0	8	n	0.00	0	6	0	6	n	ENSMUSG00000034371.10	Tkfc	chr19	protein_coding	triokinase, FMN cyclase
novel_NIR_9631	chr19	10581637	10581894	-	10581637	10582583	A5SS	ENSMUST00000236950.2	novel	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.21	3	11	3	11	y	0.00	0	10	0	10	n	0.00	0	3	0	3	n	ENSMUSG00000034371.10	Tkfc	chr19	protein_coding	triokinase, FMN cyclase
novel_NIR_9632	chr19	10581637	10581894	-	10581637	10582773	A5SS	ENSMUST00000237788.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.33	3	6	3	6	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	ENSMUSG00000034371.10	Tkfc	chr19	protein_coding	triokinase, FMN cyclase
novel_NIR_9633	chr19	10581637	10582453	-	10581637	10582305	A5SS	ENSMUST00000236478.2	novel	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.10	1	9	1	9	n	0.11	1	8	1	8	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.20	1	4	1	4	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.25	2	6	2	6	y	ENSMUSG00000034371.10	Tkfc	chr19	protein_coding	triokinase, FMN cyclase
novel_NIR_9634	chr19	10581637	10582453	-	10581637	10582583	A5SS	ENSMUST00000236950.2	novel	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.09	1	10	1	10	n	0.14	1	6	1	6	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.40	2	3	2	3	y	ENSMUSG00000034371.10	Tkfc	chr19	protein_coding	triokinase, FMN cyclase
novel_NIR_9635	chr19	10581637	10582453	-	10581637	10582773	A5SS	ENSMUST00000237788.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.33	1	2	1	2	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.29	2	5	2	5	y	ENSMUSG00000034371.10	Tkfc	chr19	protein_coding	triokinase, FMN cyclase
novel_NIR_9636	chr19	10582420	10582583	-	10581637	10582583	A3SS	ENSMUST00000236950.2	novel	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.08	1	12	1	12	n	0.33	2	4	2	4	y	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	ENSMUSG00000034371.10	Tkfc	chr19	protein_coding	triokinase, FMN cyclase
novel_NIR_9637	chr19	10628012	10631598	+	10628012;10630499	10630414;10631598	ES	ENSMUST00000055115.9	novel	0.03	1	34.5	1	38;31	n	0.06	2	34.0	2	29;39	n	0.13	2	13.0	2	18;8	n	0.07	3	37.5	3	39;36	n	0.14	9	55.5	9	61;50	n	0.00	0	14.5	0	16;13	n	0.08	4	48.5	4	52;45	n	0.11	3	25.5	3	26;25	n	0.08	2	22.0	2	26;18	n	0.03	2	65.0	2	67;63	n	0.00	0	36.0	0	30;42	n	0.16	8	42.0	8	44;40	y	ENSMUSG00000043789.9	Vwce	chr19	protein_coding	von Willebrand factor C and EGF domains
novel_NIR_9638	chr19	10628012	10631598	+	10630499	10631598	A5SS&ES	ENSMUST00000235938.2	novel	0.03	1	31	1	31	n	0.05	2	39	2	39	n	0.20	2	8	2	8	y	0.08	3	36	3	36	n	0.15	9	50	9	50	y	0.00	0	13	0	13	n	0.08	4	45	4	45	n	0.11	3	25	3	25	n	0.10	2	18	2	18	n	0.03	2	63	2	63	n	0.00	0	42	0	42	n	0.17	8	40	8	40	y	ENSMUSG00000043789.9	Vwce	chr19	protein_coding	von Willebrand factor C and EGF domains
novel_NIR_9639	chr19	10632781	10633974	+	10632801	10633974	A5SS	ENSMUST00000055115.9	novel	0.50	11	11	11	11	y	0.51	18	17	18	17	y	0.50	7	7	7	7	y	0.41	11	16	11	16	y	0.46	22	26	22	26	y	0.53	8	7	8	7	y	0.36	17	30	17	30	y	0.55	18	15	18	15	y	0.70	16	7	16	7	y	0.46	17	20	17	20	y	0.70	16	7	16	7	y	0.53	17	15	17	15	y	ENSMUSG00000043789.9	Vwce	chr19	protein_coding	von Willebrand factor C and EGF domains
novel_NIR_9640	chr19	10680728	10683574	+	10666173	10683574	A5SS	ENSMUST00000237240.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000048832.10	Vps37c	chr19	protein_coding	vacuolar protein sorting 37C
novel_NIR_9641	chr19	10680728	10683574	+	10666260	10683574	A5SS	ENSMUST00000237437.2	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000048832.10	Vps37c	chr19	protein_coding	vacuolar protein sorting 37C
novel_NIR_9642	chr19	10680728	10683574	+	10666347	10683574	A5SS	ENSMUST00000235927.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000048832.10	Vps37c	chr19	protein_coding	vacuolar protein sorting 37C
novel_NIR_9643	chr19	11013196	11014781	-	11013196	11014898	A5SS	ENSMUST00000185380.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000101264.2	Gm28347	chr19	lncRNA	predicted gene 28347
novel_NIR_9644	chr19	12438225	12438515	+	12438225	12438397	A3SS	ENSMUST00000081035.9	novel	0.86	19	3	19	3	y	0.86	18	3	18	3	y	0.86	38	6	38	6	y	0.90	27	3	27	3	y	0.88	35	5	35	5	y	0.88	29	4	29	4	y	0.71	12	5	12	5	y	0.92	22	2	22	2	y	0.71	15	6	15	6	y	0.91	20	2	20	2	y	0.43	3	4	3	4	y	0.81	25	6	25	6	y	ENSMUSG00000046805.11	Mpeg1	chr19	protein_coding	macrophage expressed gene 1
novel_NIR_9645	chr19	12463854	12464187	-	12463854	12469200	A5SS	ENSMUST00000045521.9	novel	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.14	1	6	1	6	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.43	3	4	3	4	y	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.06	1	15	1	15	n	ENSMUSG00000039982.9	Dtx4	chr19	protein_coding	deltex 4, E3 ubiquitin ligase
novel_NIR_9646	chr19	12495959	12497113	-	12496188	12497113	A3SS	ENSMUST00000224046.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000086213.3	A330040F15Rik	chr19	lncRNA	RIKEN cDNA A330040F15 gene
novel_NIR_9647	chr19	12517308	12563590	-	12500793	12563590	A3SS	ENSMUST00000224046.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000086213.3	A330040F15Rik	chr19	lncRNA	RIKEN cDNA A330040F15 gene
novel_NIR_9648	chr19	12517312	12563590	-	12500793	12563590	A3SS	ENSMUST00000224046.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000086213.3	A330040F15Rik	chr19	lncRNA	RIKEN cDNA A330040F15 gene
novel_NIR_9649	chr19	12517312	12563590	-	12517312	12518074	5pMXE	ENSMUST00000224027.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000114761.2	Gm47242	chr19	lncRNA	predicted gene, 47242
novel_NIR_9650	chr19	12544969	12563590	-	12500793	12563590	A3SS	ENSMUST00000224046.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000086213.3	A330040F15Rik	chr19	lncRNA	RIKEN cDNA A330040F15 gene
novel_NIR_9651	chr19	12610970	12616216	+	12610970	12611786	3pMXE	ENSMUST00000155846.8	novel	0.50	5	5	5	5	y	0.29	4	10	4	10	y	0.78	25	7	25	7	y	0.53	9	8	9	8	y	0.53	10	9	10	9	y	0.57	8	6	8	6	y	0.57	12	9	12	9	y	0.85	11	2	11	2	y	0.50	8	8	8	8	y	0.72	13	5	13	5	y	0.40	6	9	6	9	y	0.40	6	9	6	9	y	ENSMUSG00000063683.13	Glyat	chr19	protein_coding	glycine-N-acyltransferase
novel_NIR_9652	chr19	12610970	12616857	+	12610970	12611786	3pMXE	ENSMUST00000155846.8	novel	0.38	3	5	3	5	y	0.38	6	10	6	10	y	0.68	15	7	15	7	y	0.47	7	8	7	8	y	0.67	18	9	18	9	y	0.14	1	6	1	6	n	0.65	17	9	17	9	y	0.60	3	2	3	2	y	0.56	10	8	10	8	y	0.38	3	5	3	5	y	0.31	4	9	4	9	y	0.31	4	9	4	9	y	ENSMUSG00000063683.13	Glyat	chr19	protein_coding	glycine-N-acyltransferase
novel_NIR_9653	chr19	12610970	12616958	+	12610970	12611786	3pMXE	ENSMUST00000155846.8	novel	0.29	2	5	2	5	y	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	ENSMUSG00000063683.13	Glyat	chr19	protein_coding	glycine-N-acyltransferase
novel_NIR_9654	chr19	12610970	12617169	+	12610970	12611786	3pMXE	ENSMUST00000155846.8	novel	0.00	0	5	0	5	n	0.23	3	10	3	10	y	0.12	1	7	1	7	n	0.11	1	8	1	8	n	0.10	1	9	1	9	n	0.00	0	6	0	6	n	0.31	4	9	4	9	y	0.00	0	2	0	2	n	0.27	3	8	3	8	y	0.50	5	5	5	5	y	0.31	4	9	4	9	y	0.18	2	9	2	9	y	ENSMUSG00000063683.13	Glyat	chr19	protein_coding	glycine-N-acyltransferase
novel_NIR_9655	chr19	12610970	12623667	+	12610970	12611786	3pMXE	ENSMUST00000155846.8	novel	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.10	1	9	1	9	n	0.00	0	6	0	6	n	0.25	3	9	3	9	y	0.00	0	2	0	2	n	0.11	1	8	1	8	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	ENSMUSG00000063683.13	Glyat	chr19	protein_coding	glycine-N-acyltransferase
novel_NIR_9656	chr19	12616281	12617136	+	12617047	12617136	5pMXE	ENSMUST00000123173.2	novel	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.00	0	21	0	21	n	0.14	2	12	2	12	n	0.00	0	19	0	19	n	0.18	4	18	4	18	y	0.00	0	13	0	13	n	0.12	3	23	3	23	n	0.09	2	21	2	21	n	0.00	0	14	0	14	n	ENSMUSG00000063683.13	Glyat	chr19	protein_coding	glycine-N-acyltransferase
novel_NIR_9657	chr19	12619577	12623667	+	12617267	12623667	A5SS	ENSMUST00000119960.2	novel	0.44	4	5	4	5	y	0.64	7	4	7	4	y	0.70	7	3	7	3	y	0.75	6	2	6	2	y	0.71	5	2	5	2	y	1.00	5	0	5	0	y	0.30	3	7	3	7	y	1.00	4	0	4	0	y	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.38	3	5	3	5	y	1.00	2	0	2	0	y	ENSMUSG00000063683.13	Glyat	chr19	protein_coding	glycine-N-acyltransferase
novel_NIR_9658	chr19	12656549	12660289	+	12656549	12657445	A3SS	ENSMUST00000215134.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045030.9	Olfr1443	chr19	protein_coding	olfactory receptor 1443
novel_NIR_9659	chr19	12656549	12660289	+	12656549;12658843	12657445;12660289	ES	ENSMUST00000213486.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045030.9	Olfr1443	chr19	protein_coding	olfactory receptor 1443
novel_NIR_9660	chr19	12693433	12693866	+	12693433	12696273	A3SS	ENSMUST00000154822.2	novel	0.83	10	2	10	2	y	0.94	16	1	16	1	y	-	-	-	-	-	-	1.00	12	0	12	0	y	0.83	5	1	5	1	y	-	-	-	-	-	-	1.00	10	0	10	0	y	1.00	1	0	1	0	n	0.94	30	2	30	2	y	0.73	11	4	11	4	y	0.91	29	3	29	3	y	0.70	16	7	16	7	y	ENSMUSG00000024694.10	Keg1	chr19	protein_coding	kidney expressed gene 1
novel_NIR_9661	chr19	14495337	14541753	-	14495337;14522226	14522152;14541753	ES	ENSMUST00000052011.15	novel	0.00	0	5.0	0	5;5	n	0.00	0	3.5	0	4;3	n	0.22	2	7.0	2	5;9	y	0.00	0	13.0	0	12;14	n	0.00	0	7.0	0	5;9	n	0.00	0	2.5	0	5;0	n	0.00	0	9.5	0	7;12	n	0.00	0	4.0	0	2;6	n	0.00	0	7.0	0	7;7	n	0.00	0	9.0	0	9;9	n	0.00	0	5.0	0	5;5	n	0.00	0	20.5	0	18;23	n	ENSMUSG00000024642.18	Tle4	chr19	protein_coding	transducin-like enhancer of split 4
novel_NIR_9662	chr19	14495337	14541753	-	14522226	14541753	3pMXE	ENSMUST00000235975.2	novel	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.18	2	9	2	9	y	0.00	0	14	0	14	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	23	0	23	n	ENSMUSG00000024642.18	Tle4	chr19	protein_coding	transducin-like enhancer of split 4
novel_NIR_9663	chr19	14574218	14574453	-	14574218	14574732	A5SS	ENSMUST00000052011.15	novel	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.50	1	1	1	1	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.17	1	5	1	5	n	0.08	1	11	1	11	n	ENSMUSG00000024642.18	Tle4	chr19	protein_coding	transducin-like enhancer of split 4
novel_NIR_9664	chr19	15933767	15938307	-	15933767;15937064	15936896;15938307	ES	ENSMUST00000047704.8	novel	0.22	2	7.0	2	8;6	y	0.00	0	5.0	0	6;4	n	0.00	0	3.0	0	3;3	n	0.00	0	4.5	0	7;2	n	0.70	7	3.0	7	4;2	y	0.33	1	2.0	1	4;0	n	0.36	2	3.5	2	7;0	y	0.29	1	2.5	1	2;3	n	0.50	1	1.0	1	0;2	n	0.00	0	3.0	0	3;3	n	0.00	0	4.5	0	6;3	n	0.00	0	2.0	0	2;2	n	ENSMUSG00000041491.9	Cep78	chr19	protein_coding	centrosomal protein 78
novel_NIR_9665	chr19	15939813	15947897	-	15939813;15946564	15946436;15947897	ES	ENSMUST00000235718.2	novel	0.00	0	6.0	0	5;7	n	0.13	1	6.5	1	8;5	n	0.00	0	3.5	0	3;4	n	0.00	0	4.5	0	5;4	n	0.00	0	1.0	0	2;0	n	0.00	0	3.0	0	5;1	n	0.00	0	4.5	0	5;4	n	0.00	0	4.0	0	3;5	n	0.00	0	3.0	0	3;3	n	0.00	0	5.5	0	4;7	n	0.00	0	5.5	0	6;5	n	0.33	2	4.0	2	5;3	y	ENSMUSG00000041491.9	Cep78	chr19	protein_coding	centrosomal protein 78
novel_NIR_9666	chr19	16605684	16607455	-	16605684	16608332	A5SS	ENSMUST00000223667.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000046230.12	Vps13a	chr19	protein_coding	vacuolar protein sorting 13A
novel_NIR_9667	chr19	16646065	16655218	-	16646065;16653570	16653410;16655218	ES	ENSMUST00000068156.8	novel	0.29	1	2.5	1	2;3	n	-	-	-	-	-	-	0.00	0	7.5	0	7;8	n	0.50	2	2.0	2	2;2	y	0.15	1	5.5	1	2;9	n	0.00	0	2.5	0	1;4	n	0.00	0	5.0	0	4;6	n	0.00	0	8.5	0	9;8	n	0.00	0	4.0	0	4;4	n	0.13	1	6.5	1	9;4	n	0.00	0	6.0	0	5;7	n	0.39	6	9.5	6	5;14	y	ENSMUSG00000046230.12	Vps13a	chr19	protein_coding	vacuolar protein sorting 13A
novel_NIR_9668	chr19	17440855	17443470	-	17440900	17443470	A3SS	ENSMUST00000025618.16	novel	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	18	0	18	n	0.00	0	16	0	16	n	0.00	0	17	0	17	n	0.00	0	15	0	15	n	0.00	0	3	0	3	n	0.27	3	8	3	8	y	0.00	0	4	0	4	n	0.20	1	4	1	4	n	ENSMUSG00000024713.17	Pcsk5	chr19	protein_coding	proprotein convertase subtilisin/kexin type 5
novel_NIR_9669	chr19	17443547	17450318	-	17443547;17446462	17446382;17450318	ES	ENSMUST00000025618.16	novel	0.00	0	4.0	0	6;2	n	0.00	0	0.5	0	1;0	n	0.17	2	10.0	2	9;11	y	0.00	0	7.0	0	8;6	n	0.18	3	14.0	3	17;11	y	0.11	1	8.0	1	8;8	n	0.20	3	12.0	3	12;12	y	0.13	1	6.5	1	5;8	n	0.67	1	0.5	1	1;0	n	0.17	2	9.5	2	12;7	y	0.00	0	2.0	0	2;2	n	0.13	1	6.5	1	9;4	n	ENSMUSG00000024713.17	Pcsk5	chr19	protein_coding	proprotein convertase subtilisin/kexin type 5
novel_NIR_9670	chr19	17483668	17487532	-	17455280	17487532	A3SS	ENSMUST00000025618.16	novel	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	17	0	17	n	0.00	0	13	0	13	n	0.07	1	13	1	13	n	0.00	0	16	0	16	n	0.18	2	9	2	9	y	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	ENSMUSG00000024713.17	Pcsk5	chr19	protein_coding	proprotein convertase subtilisin/kexin type 5
novel_NIR_9671	chr19	17488946	17502576	-	17488946;17492636	17492500;17502576	ES	ENSMUST00000025618.16	novel	0.00	0	7.5	0	7;8	n	0.00	0	1.0	0	1;1	n	0.00	0	17.5	0	21;14	n	0.00	0	4.5	0	5;4	n	0.00	0	16.5	0	15;18	n	0.00	0	13.0	0	12;14	n	0.00	0	13.5	0	11;16	n	0.00	0	10.5	0	10;11	n	0.00	0	4.0	0	4;4	n	0.21	2	7.5	2	7;8	y	0.00	0	5.0	0	6;4	n	0.00	0	4.5	0	2;7	n	ENSMUSG00000024713.17	Pcsk5	chr19	protein_coding	proprotein convertase subtilisin/kexin type 5
novel_NIR_9672	chr19	18613506	18615573	+	18613506	18616882	A3SS	ENSMUST00000042392.14	novel	0.23	9	31	9	31	y	0.29	11	27	11	27	n	0.35	9	17	9	17	y	0.11	7	54	7	54	n	0.42	22	30	22	30	y	0.25	4	12	4	12	y	0.35	16	30	16	30	y	0.46	21	25	21	25	y	0.34	11	21	11	21	n	0.14	10	62	10	62	n	0.24	16	51	16	51	y	0.17	12	59	12	59	y	ENSMUSG00000037847.15	Nmrk1	chr19	protein_coding	nicotinamide riboside kinase 1
novel_NIR_9673	chr19	18613506;18615655	18615573;18616282	+	18613506	18616282	cassetteExon	ENSMUST00000161080.2	novel	0.91	10.5	1	9;12	1	y	0.91	10.5	1	11;10	1	y	1.00	11.5	0	9;14	0	y	0.69	11.0	5	7;15	5	y	0.84	20.5	4	22;19	4	y	0.75	3.0	1	4;2	1	y	0.81	17.0	4	16;18	4	y	0.81	21.5	5	21;22	5	y	1.00	10.5	0	11;10	0	y	0.89	15.5	2	10;21	2	y	0.83	14.5	3	16;13	3	y	0.70	14.0	6	12;16	6	y	ENSMUSG00000037847.15	Nmrk1	chr19	protein_coding	nicotinamide riboside kinase 1
novel_NIR_9674	chr19	18613506;18615655	18615573;18616882	+	18613506	18616882	cassetteExon	ENSMUST00000042392.14	novel	0.13	4.5	31	9;0	31	n	0.18	6.0	27	11;1	27	n	0.21	4.5	17	9;0	17	n	0.06	3.5	54	7;0	54	n	0.27	11.0	30	22;0	30	n	0.14	2.0	12	4;0	12	n	0.21	8.0	30	16;0	30	n	0.30	10.5	25	21;0	25	n	0.25	7.0	21	11;3	21	y	0.07	5.0	62	10;0	62	n	0.14	8.0	51	16;0	51	n	0.09	6.0	59	12;0	59	n	ENSMUSG00000037847.15	Nmrk1	chr19	protein_coding	nicotinamide riboside kinase 1
novel_NIR_9675	chr19	18613506;18615655	18615573;18616882	+	18613506;18616763	18616282;18616882	MXE	ENSMUST00000161080.2	novel	0.39	4.5	7.0	9;0	1;13	n	0.44	6.0	7.5	11;1	1;14	n	0.28	4.5	11.5	9;0	0;23	n	0.19	3.5	14.5	7;0	5;24	n	0.39	11.0	17.5	22;0	4;31	n	0.21	2.0	7.5	4;0	1;14	n	0.31	8.0	17.5	16;0	4;31	n	0.47	10.5	12.0	21;0	5;19	n	0.29	7.0	17.5	11;3	0;35	y	0.30	5.0	11.5	10;0	2;21	n	0.39	8.0	12.5	16;0	3;22	n	0.34	6.0	11.5	12;0	6;17	n	ENSMUSG00000037847.15	Nmrk1	chr19	protein_coding	nicotinamide riboside kinase 1
novel_NIR_9676	chr19	20470587	20470759	+	20470185	20470759	A5SS	ENSMUST00000224807.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.38	10	16	10	16	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000053279.9	Aldh1a1	chr19	protein_coding	aldehyde dehydrogenase family 1, subfamily A1
novel_NIR_9677	chr19	20470888	20515488	+	20470888	20518424	A3SS	ENSMUST00000225249.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000053279.9	Aldh1a1	chr19	protein_coding	aldehyde dehydrogenase family 1, subfamily A1
novel_NIR_9678	chr19	21251013	21253790	+	21250706	21253790	A5SS	ENSMUST00000025659.12	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024750.12	Zfand5	chr19	protein_coding	zinc finger, AN1-type domain 5
novel_NIR_9679	chr19	21576232	21589087	-	21576232	21581653	5pMXE	ENSMUST00000177605.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035171.10	1110059E24Rik	chr19	protein_coding	RIKEN cDNA 1110059E24 gene
novel_NIR_9680	chr19	21576232	21589087	-	21576232	21587970	A5SS&ES	ENSMUST00000180304.2	novel	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035171.10	1110059E24Rik	chr19	protein_coding	RIKEN cDNA 1110059E24 gene
novel_NIR_9681	chr19	21576232	21589087	-	21576232	21607874	A5SS	ENSMUST00000178012.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035171.10	1110059E24Rik	chr19	protein_coding	RIKEN cDNA 1110059E24 gene
novel_NIR_9682	chr19	21576232	21589087	-	21576232	21629971	A5SS	ENSMUST00000179553.2	novel	0.00	0	8	0	8	n	0.22	2	7	2	7	y	0.00	0	22	0	22	n	0.00	0	14	0	14	n	0.00	0	25	0	25	n	0.00	0	10	0	10	n	0.00	0	27	0	27	n	0.00	0	23	0	23	n	0.00	0	10	0	10	n	0.00	0	21	0	21	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	ENSMUSG00000035171.10	1110059E24Rik	chr19	protein_coding	RIKEN cDNA 1110059E24 gene
novel_NIR_9683	chr19	21656186	21658272	+	21656186	21658354	A3SS	ENSMUST00000235332.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000047368.5	Abhd17b	chr19	protein_coding	abhydrolase domain containing 17B
novel_NIR_9684	chr19	21754992	21770002	+	21756150	21770002	5pMXE	ENSMUST00000236506.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.12	1	7	1	7	n	0.00	0	4	0	4	n	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.12	1	7	1	7	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000024754.14	Cemip2	chr19	protein_coding	cell migration inducing hyaluronidase 2
novel_NIR_9685	chr19	23039184	23040138	+	23039431	23040138	A5SS&ES	ENSMUST00000235884.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.60	3	2	3	2	y	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000118155.2	Gm50136	chr19	lncRNA	predicted gene, 50136
novel_NIR_9686	chr19	23039184	23040138	+	23039482	23040138	A5SS&ES	ENSMUST00000235686.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000118155.2	Gm50136	chr19	lncRNA	predicted gene, 50136
novel_NIR_9687	chr19	23039184	23040642	+	23039431	23040642	A5SS&ES	ENSMUST00000237212.2	novel	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.43	9	12	9	12	y	0.22	2	7	2	7	y	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.29	2	5	2	5	y	0.00	0	5	0	5	n	0.00	0	1	0	1	n	ENSMUSG00000118155.2	Gm50136	chr19	lncRNA	predicted gene, 50136
novel_NIR_9688	chr19	23039184	23040642	+	23040281	23040642	A5SS&ES	ENSMUST00000235884.2	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.47	9	10	9	10	y	0.25	2	6	2	6	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.25	2	6	2	6	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000118155.2	Gm50136	chr19	lncRNA	predicted gene, 50136
novel_NIR_9689	chr19	23039431	23045453	+	23039431	23040642	3pMXE	ENSMUST00000237212.2	novel	0.00	0	4	0	4	n	0.08	1	11	1	11	n	0.14	1	6	1	6	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.58	7	5	7	5	y	0.69	9	4	9	4	y	0.75	3	1	3	1	y	0.00	0	5	0	5	n	0.17	1	5	1	5	n	0.67	2	1	2	1	y	ENSMUSG00000118155.2	Gm50136	chr19	lncRNA	predicted gene, 50136
novel_NIR_9690	chr19	23040281	23045453	+	23040281	23040642	3pMXE	ENSMUST00000235884.2	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.40	4	6	4	6	y	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000118155.2	Gm50136	chr19	lncRNA	predicted gene, 50136
novel_NIR_9691	chr19	23041807	23042510	-	23041807	23053121	A5SS	ENSMUST00000181623.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000097930.3	C330002G04Rik	chr19	lncRNA	RIKEN cDNA C330002G04 gene
novel_NIR_9692	chr19	23141582	23142047	+	23121336	23142047	A5SS	ENSMUST00000236357.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000033863.3	Klf9	chr19	protein_coding	Kruppel-like factor 9
novel_NIR_9693	chr19	23199997	23205538	-	23195894	23205538	A3SS	ENSMUST00000087556.7	novel	0.00	0	19	0	19	n	0.00	0	15	0	15	n	0.00	0	41	0	41	n	0.00	0	22	0	22	n	0.00	0	44	0	44	n	0.27	3	8	3	8	y	0.00	0	39	0	39	n	0.00	0	18	0	18	n	0.00	0	23	0	23	n	0.00	0	32	0	32	n	0.00	0	16	0	16	n	0.00	0	33	0	33	n	ENSMUSG00000024943.10	Smc5	chr19	protein_coding	structural maintenance of chromosomes 5
novel_NIR_9694	chr19	24115273	24116143	-	24112338	24116143	A3SS	ENSMUST00000233027.2	novel	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	16	0	16	n	0.00	0	12	0	12	n	0.00	0	17	0	17	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.40	2	3	2	3	y	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	ENSMUSG00000024812.12	Tjp2	chr19	protein_coding	tight junction protein 2
novel_NIR_9695	chr19	24244763	24246342	-	24244763	24249668	A5SS	ENSMUST00000123684.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000059363.11	Fxn	chr19	protein_coding	frataxin
novel_NIR_9696	chr19	24244763	24247398	-	24244763	24249668	A5SS	ENSMUST00000123684.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.75	3	1	3	1	y	0.00	0	2	0	2	n	0.75	3	1	3	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	ENSMUSG00000059363.11	Fxn	chr19	protein_coding	frataxin
novel_NIR_9697	chr19	25074652	25074776	+	25073009	25074776	A5SS	ENSMUST00000025831.8	novel	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.05	1	20	1	20	n	0.17	1	5	1	5	n	0.33	1	2	1	2	n	0.00	0	7	0	7	n	0.40	2	3	2	3	y	0.17	1	5	1	5	n	0.06	1	15	1	15	n	0.00	0	9	0	9	n	0.12	1	7	1	7	n	ENSMUSG00000052085.8	Dock8	chr19	protein_coding	dedicator of cytokinesis 8
novel_NIR_9698	chr19	25359746	25386450	+	25355894	25386450	A5SS	ENSMUST00000049400.15	novel	1.00	12	0	12	0	y	-	-	-	-	-	-	0.88	7	1	7	1	y	0.80	8	2	8	2	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	7	0	7	0	y	1.00	12	0	12	0	y	1.00	17	0	17	0	y	1.00	2	0	2	0	y	0.00	0	4	0	4	n	ENSMUSG00000032702.17	Kank1	chr19	protein_coding	KN motif and ankyrin repeat domains 1
novel_NIR_9699	chr19	25359746	25386450	+	25372735	25386450	5pMXE	ENSMUST00000137260.2	novel	1.00	12	0	12	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	1.00	8	0	8	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.88	7	1	7	1	y	1.00	12	0	12	0	y	1.00	17	0	17	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000032702.17	Kank1	chr19	protein_coding	KN motif and ankyrin repeat domains 1
novel_NIR_9700	chr19	25359746	25386450	+	25384397	25386450	5pMXE	ENSMUST00000146647.3	novel	0.86	12	2	12	2	y	-	-	-	-	-	-	0.30	7	16	7	16	y	0.53	8	7	8	7	y	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.50	7	7	7	7	y	0.63	12	7	12	7	y	0.65	17	9	17	9	y	0.29	2	5	2	5	y	0.00	0	6	0	6	n	ENSMUSG00000032702.17	Kank1	chr19	protein_coding	KN motif and ankyrin repeat domains 1
novel_NIR_9701	chr19	25361154	25386450	+	25355894	25386450	A5SS	ENSMUST00000049400.15	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000032702.17	Kank1	chr19	protein_coding	KN motif and ankyrin repeat domains 1
novel_NIR_9702	chr19	25361154	25386450	+	25372735	25386450	5pMXE	ENSMUST00000137260.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032702.17	Kank1	chr19	protein_coding	KN motif and ankyrin repeat domains 1
novel_NIR_9703	chr19	25361154	25386450	+	25384397	25386450	5pMXE	ENSMUST00000146647.3	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.50	2	2	2	2	y	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	ENSMUSG00000032702.17	Kank1	chr19	protein_coding	KN motif and ankyrin repeat domains 1
novel_NIR_9704	chr19	25384401	25386450	+	25355894	25386450	A5SS	ENSMUST00000049400.15	novel	1.00	3	0	3	0	y	1.00	4	0	4	0	y	0.50	1	1	1	1	n	0.86	12	2	12	2	y	1.00	6	0	6	0	y	1.00	3	0	3	0	y	0.75	3	1	3	1	y	1.00	9	0	9	0	y	1.00	8	0	8	0	y	1.00	7	0	7	0	y	1.00	5	0	5	0	y	0.33	2	4	2	4	y	ENSMUSG00000032702.17	Kank1	chr19	protein_coding	KN motif and ankyrin repeat domains 1
novel_NIR_9705	chr19	25384401	25386450	+	25372735	25386450	A5SS	ENSMUST00000137260.2	novel	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	12	0	12	0	y	1.00	6	0	6	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	0.90	9	1	9	1	y	1.00	8	0	8	0	y	1.00	7	0	7	0	y	1.00	5	0	5	0	y	1.00	2	0	2	0	y	ENSMUSG00000032702.17	Kank1	chr19	protein_coding	KN motif and ankyrin repeat domains 1
novel_NIR_9706	chr19	25384401	25386450	+	25384397	25386450	A5SS	ENSMUST00000146647.3	novel	0.60	3	2	3	2	y	1.00	4	0	4	0	y	0.06	1	16	1	16	n	0.63	12	7	12	7	y	0.50	6	6	6	6	y	0.38	3	5	3	5	y	0.60	3	2	3	2	y	0.56	9	7	9	7	y	0.53	8	7	8	7	y	0.44	7	9	7	9	y	0.50	5	5	5	5	y	0.25	2	6	2	6	y	ENSMUSG00000032702.17	Kank1	chr19	protein_coding	KN motif and ankyrin repeat domains 1
novel_NIR_9707	chr19	25384554	25386450	+	25355894	25386450	A5SS	ENSMUST00000049400.15	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000032702.17	Kank1	chr19	protein_coding	KN motif and ankyrin repeat domains 1
novel_NIR_9708	chr19	25384554	25386450	+	25372735	25386450	A5SS	ENSMUST00000137260.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032702.17	Kank1	chr19	protein_coding	KN motif and ankyrin repeat domains 1
novel_NIR_9709	chr19	25384554	25386450	+	25384397	25386450	A5SS	ENSMUST00000146647.3	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.00	0	7	0	7	n	0.30	3	7	3	7	y	0.10	1	9	1	9	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	ENSMUSG00000032702.17	Kank1	chr19	protein_coding	KN motif and ankyrin repeat domains 1
novel_NIR_9710	chr19	26646571	26648009	+	26646571	26648484	A3SS	ENSMUST00000176769.9	novel	0.09	3	31	3	31	n	0.00	0	25	0	25	n	0.18	6	28	6	28	y	0.00	0	58	0	58	n	0.03	2	64	2	64	n	0.00	0	10	0	10	n	0.00	0	50	0	50	n	0.10	4	37	4	37	n	0.02	1	45	1	45	n	0.06	6	90	6	90	n	0.09	3	29	3	29	n	0.12	8	59	8	59	n	ENSMUSG00000024921.18	Smarca2	chr19	protein_coding	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
novel_NIR_9711	chr19	26725698	26727252	+	26725698	26729224	A3SS	ENSMUST00000175791.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	ENSMUSG00000024921.18	Smarca2	chr19	protein_coding	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
novel_NIR_9712	chr19	26725698	26727252	+	26725740	26727252	A5SS	ENSMUST00000207812.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000024921.18	Smarca2	chr19	protein_coding	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
novel_NIR_9713	chr19	26725698	26727252	+	26725846	26727252	5pMXE	ENSMUST00000207832.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	ENSMUSG00000024921.18	Smarca2	chr19	protein_coding	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
novel_NIR_9714	chr19	26725698	26727252	+	26725903	26727252	5pMXE	ENSMUST00000209085.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	2	2	2	2	y	ENSMUSG00000024921.18	Smarca2	chr19	protein_coding	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
novel_NIR_9715	chr19	26725698	26727252	+	26725937	26727252	5pMXE	ENSMUST00000208541.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000024921.18	Smarca2	chr19	protein_coding	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
novel_NIR_9716	chr19	26725698	26727252	+	26725944	26727252	5pMXE	ENSMUST00000207118.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	0.40	2	3	2	3	y	ENSMUSG00000024921.18	Smarca2	chr19	protein_coding	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
novel_NIR_9717	chr19	26725698	26727252	+	26726352	26727252	5pMXE	ENSMUST00000207054.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000024921.18	Smarca2	chr19	protein_coding	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
novel_NIR_9718	chr19	26732050	26748908	+	26729441	26748908	A5SS	ENSMUST00000176731.3	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	ENSMUSG00000024921.18	Smarca2	chr19	protein_coding	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
novel_NIR_9719	chr19	26732050	26748908	+	26737331	26748908	A5SS&ES	ENSMUST00000099537.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000024921.18	Smarca2	chr19	protein_coding	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
novel_NIR_9720	chr19	26737631	26737712	+	26737631	26748338	A3SS	ENSMUST00000207535.2	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000024921.18	Smarca2	chr19	protein_coding	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
novel_NIR_9721	chr19	28906032	28915756	-	28906032	28906525	5pMXE	ENSMUST00000159655.2	novel	0.15	2	11	2	11	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.10	1	9	1	9	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	ENSMUSG00000064202.16	Spata6l	chr19	protein_coding	spermatogenesis associated 6 like
novel_NIR_9722	chr19	28906032	28915756	-	28906032	28915632	A5SS	ENSMUST00000175647.8	novel	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000064202.16	Spata6l	chr19	protein_coding	spermatogenesis associated 6 like
novel_NIR_9723	chr19	28984487	28984977	+	28984487	28989289	A3SS	ENSMUST00000224092.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000024780.8	Cdc37l1	chr19	protein_coding	cell division cycle 37-like 1
novel_NIR_9724	chr19	28989453	28991211	+	28989453	28993801	A3SS	ENSMUST00000224830.2	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.75	3	1	3	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000024780.8	Cdc37l1	chr19	protein_coding	cell division cycle 37-like 1
novel_NIR_9725	chr19	28989453	28991211	+	28989453	29002204	A3SS	ENSMUST00000224511.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.60	3	2	3	2	y	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	ENSMUSG00000024780.8	Cdc37l1	chr19	protein_coding	cell division cycle 37-like 1
novel_NIR_9726	chr19	28989453	28991211	+	28989453;28990310	28990188;28991211	ES	ENSMUST00000223694.2	novel	0.00	0	12.0	0	24;0	n	0.00	0	10.0	0	20;0	n	0.00	0	9.5	0	19;0	n	0.00	0	11.0	0	20;2	n	0.00	0	20.5	0	41;0	n	0.00	0	5.5	0	11;0	n	0.00	0	13.0	0	26;0	n	0.00	0	13.0	0	26;0	n	0.20	3	12.0	3	24;0	y	0.00	0	15.0	0	30;0	n	0.00	0	12.0	0	24;0	n	0.00	0	12.0	0	24;0	n	ENSMUSG00000024780.8	Cdc37l1	chr19	protein_coding	cell division cycle 37-like 1
novel_NIR_9727	chr19	28989453	28993242	+	28989453	28990188	3pMXE	ENSMUST00000225310.2	novel	0.14	4	24	4	24	n	0.20	5	20	5	20	y	0.14	3	19	3	19	n	0.00	0	20	0	20	n	0.00	0	41	0	41	n	0.15	2	11	2	11	y	0.10	3	26	3	26	n	0.07	2	26	2	26	n	0.11	3	24	3	24	n	0.09	3	30	3	30	n	0.14	4	24	4	24	n	0.00	0	24	0	24	n	ENSMUSG00000024780.8	Cdc37l1	chr19	protein_coding	cell division cycle 37-like 1
novel_NIR_9728	chr19	28989453	28993242	+	28989453	28993801	A3SS	ENSMUST00000224830.2	novel	0.57	4	3	4	3	y	0.83	5	1	5	1	y	0.50	3	3	3	3	y	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.50	3	3	3	3	y	0.50	2	2	2	2	y	0.75	3	1	3	1	y	1.00	3	0	3	0	y	0.80	4	1	4	1	y	0.00	0	1	0	1	n	ENSMUSG00000024780.8	Cdc37l1	chr19	protein_coding	cell division cycle 37-like 1
novel_NIR_9729	chr19	28989453	28993242	+	28989453	29002204	A3SS	ENSMUST00000224511.2	novel	0.57	4	3	4	3	y	1.00	5	0	5	0	y	0.43	3	4	3	4	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.50	2	2	2	2	y	0.75	3	1	3	1	y	1.00	2	0	2	0	y	0.60	3	2	3	2	y	1.00	3	0	3	0	y	0.50	4	4	4	4	y	-	-	-	-	-	-	ENSMUSG00000024780.8	Cdc37l1	chr19	protein_coding	cell division cycle 37-like 1
novel_NIR_9730	chr19	28989453	28998173	+	28989453	28993801	3pMXE	ENSMUST00000224830.2	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000024780.8	Cdc37l1	chr19	protein_coding	cell division cycle 37-like 1
novel_NIR_9731	chr19	28989453	28998173	+	28989453	29002204	A3SS	ENSMUST00000224511.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	ENSMUSG00000024780.8	Cdc37l1	chr19	protein_coding	cell division cycle 37-like 1
novel_NIR_9732	chr19	28990310	28993242	+	28990310	28991211	A3SS&ES	ENSMUST00000223694.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024780.8	Cdc37l1	chr19	protein_coding	cell division cycle 37-like 1
novel_NIR_9733	chr19	29044982	29046317	+	29044982	29046522	A3SS	ENSMUST00000235636.2	novel	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.12	1	7	1	7	n	0.00	0	2	0	2	n	0.57	4	3	4	3	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000118038.2	Gm9895	chr19	lncRNA	predicted gene 9895
novel_NIR_9734	chr19	29044982	29046393	+	29044982	29046522	A3SS	ENSMUST00000235636.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.36	4	7	4	7	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.60	3	2	3	2	y	0.00	0	3	0	3	n	0.50	2	2	2	2	y	ENSMUSG00000118038.2	Gm9895	chr19	lncRNA	predicted gene 9895
novel_NIR_9735	chr19	29044982	29059112	+	29044982	29046522	3pMXE	ENSMUST00000235636.2	novel	0.40	2	3	2	3	y	1.00	1	0	1	0	n	0.83	5	1	5	1	y	1.00	2	0	2	0	y	0.22	2	7	2	7	y	0.33	1	2	1	2	n	0.50	3	3	3	3	y	0.33	1	2	1	2	n	0.75	3	1	3	1	y	0.33	1	2	1	2	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	ENSMUSG00000118038.2	Gm9895	chr19	lncRNA	predicted gene 9895
novel_NIR_9736	chr19	29059300	29093123	+	29079040	29093123	5pMXE	ENSMUST00000064393.6	novel	0.02	2	86	2	86	n	0.07	5	67	5	67	n	0.07	7	96	7	96	n	0.20	19	76	19	76	y	0.10	14	124	14	124	n	0.16	10	51	10	51	y	0.14	19	113	19	113	n	0.13	9	58	9	58	n	0.11	8	64	8	64	n	0.13	19	122	19	122	n	0.10	8	69	8	69	n	0.14	20	119	20	119	n	ENSMUSG00000024785.8	Rcl1	chr19	protein_coding	RNA terminal phosphate cyclase-like 1
novel_NIR_9737	chr19	29104212	29105399	+	29099290	29105399	A5SS	ENSMUST00000064393.6	novel	0.44	105	134	105	134	y	0.48	105	116	105	116	y	0.73	409	151	409	151	y	0.46	139	161	139	161	y	0.59	298	210	298	210	y	0.76	287	89	287	89	y	0.59	265	183	265	183	y	0.62	176	108	176	108	y	0.47	133	150	133	150	y	0.48	175	191	175	191	y	0.48	156	168	156	168	y	0.51	219	214	219	214	y	ENSMUSG00000024785.8	Rcl1	chr19	protein_coding	RNA terminal phosphate cyclase-like 1
novel_NIR_9738	chr19	29104222	29105399	+	29099290	29105399	A5SS	ENSMUST00000064393.6	novel	0.28	51	134	51	134	y	0.38	72	116	72	116	y	0.50	152	151	152	151	y	0.34	83	161	83	161	y	0.47	185	210	185	210	y	0.56	112	89	112	89	y	0.40	122	183	122	183	y	0.48	98	108	98	108	y	0.28	57	150	57	150	y	0.34	100	191	100	191	y	0.35	89	168	89	168	y	0.36	121	214	121	214	y	ENSMUSG00000024785.8	Rcl1	chr19	protein_coding	RNA terminal phosphate cyclase-like 1
novel_NIR_9739	chr19	29104448	29105399	+	29099290	29105399	A5SS	ENSMUST00000064393.6	novel	0.02	3	134	3	134	n	0.12	16	116	16	116	n	0.27	57	151	57	151	y	0.11	20	161	20	161	n	0.12	29	210	29	210	n	0.28	35	89	35	89	y	0.15	33	183	33	183	y	0.11	13	108	13	108	n	0.07	12	150	12	150	n	0.06	13	191	13	191	n	0.06	11	168	11	168	n	0.07	16	214	16	214	n	ENSMUSG00000024785.8	Rcl1	chr19	protein_coding	RNA terminal phosphate cyclase-like 1
novel_NIR_9740	chr19	29259943	29260942	+	29260038	29260942	A5SS	ENSMUST00000025705.7	novel	0.22	2	7	2	7	y	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	21	0	21	n	0.00	0	27	0	27	n	0.00	0	8	0	8	n	0.00	0	23	0	23	n	0.00	0	14	0	14	n	0.17	2	10	2	10	y	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.11	2	16	2	16	n	ENSMUSG00000024789.14	Jak2	chr19	protein_coding	Janus kinase 2
novel_NIR_9741	chr19	29341242	29342208	-	29339539	29342208	A3SS	ENSMUST00000138051.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000016495.13	Plgrkt	chr19	protein_coding	plasminogen receptor, C-terminal lysine transmembrane protein
novel_NIR_9742	chr19	29510672	29512574	+	29510672	29518656	A3SS	ENSMUST00000043610.13	novel	0.00	0	10	0	10	n	0.09	1	10	1	10	n	0.08	2	22	2	22	n	0.16	3	16	3	16	n	0.13	3	20	3	20	n	0.00	0	13	0	13	n	0.25	3	9	3	9	n	0.00	0	13	0	13	n	0.12	2	15	2	15	n	0.00	0	16	0	16	n	0.29	4	10	4	10	y	0.15	4	23	4	23	y	ENSMUSG00000038658.16	Ric1	chr19	protein_coding	RAB6A GEF complex partner 1
novel_NIR_9743	chr19	29510672;29512638	29512574;29518656	+	29510672	29518656	cassetteExon	ENSMUST00000043610.13	novel	0.00	0.0	10	0;0	10	n	0.05	0.5	10	1;0	10	n	0.04	1.0	22	2;0	22	n	0.16	3.0	16	3;3	16	y	0.11	2.5	20	3;2	20	n	0.00	0.0	13	0;0	13	n	0.18	2.0	9	3;1	9	n	0.00	0.0	13	0;0	13	n	0.06	1.0	15	2;0	15	n	0.06	1.0	16	0;2	16	n	0.17	2.0	10	4;0	10	n	0.08	2.0	23	4;0	23	n	ENSMUSG00000038658.16	Ric1	chr19	protein_coding	RAB6A GEF complex partner 1
novel_NIR_9744	chr19	29544762	29544909	+	29544762	29544885	A3SS	ENSMUST00000043610.13	novel	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.00	0	18	0	18	n	0.00	0	12	0	12	n	0.00	0	19	0	19	n	0.00	0	8	0	8	n	0.04	1	26	1	26	n	0.00	0	13	0	13	n	0.19	3	13	3	13	y	0.00	0	14	0	14	n	0.00	0	14	0	14	n	0.00	0	15	0	15	n	ENSMUSG00000038658.16	Ric1	chr19	protein_coding	RAB6A GEF complex partner 1
novel_NIR_9745	chr19	29556415	29557165	+	29555135	29557165	A5SS	ENSMUST00000043610.13	novel	0.31	4	9	4	9	y	0.00	0	7	0	7	n	0.00	0	36	0	36	n	0.00	0	19	0	19	n	0.00	0	21	0	21	n	0.00	0	15	0	15	n	0.00	0	18	0	18	n	0.00	0	18	0	18	n	0.00	0	17	0	17	n	0.00	0	20	0	20	n	0.00	0	11	0	11	n	0.00	0	24	0	24	n	ENSMUSG00000038658.16	Ric1	chr19	protein_coding	RAB6A GEF complex partner 1
novel_NIR_9746	chr19	29590082	29590169	-	29590079	29590169	A3SS	ENSMUST00000159692.8	novel	0.03	2	61	2	61	n	0.08	4	47	4	47	n	0.12	9	69	9	69	n	0.04	2	55	2	55	n	0.17	18	90	18	90	y	0.07	4	50	4	50	n	0.07	6	75	6	75	n	0.10	7	64	7	64	n	0.00	0	31	0	31	n	0.08	8	90	8	90	n	0.03	1	33	1	33	n	0.02	1	43	1	43	n	ENSMUSG00000046324.13	Ermp1	chr19	protein_coding	endoplasmic reticulum metallopeptidase 1
novel_NIR_9747	chr19	29696607	29697986	-	29697006	29697986	A3SS	ENSMUST00000175726.8	novel	0.40	4	6	4	6	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.20	3	12	3	12	y	0.50	1	1	1	1	n	0.11	1	8	1	8	n	0.38	5	8	5	8	y	0.11	1	8	1	8	n	0.20	1	4	1	4	n	0.33	3	6	3	6	y	0.25	2	6	2	6	y	ENSMUSG00000046138.16	9930021J03Rik	chr19	protein_coding	RIKEN cDNA 9930021J03 gene
novel_NIR_9748	chr19	29757194	29763649	-	29732417	29763649	A3SS	ENSMUST00000175726.8	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000046138.16	9930021J03Rik	chr19	protein_coding	RIKEN cDNA 9930021J03 gene
novel_NIR_9749	chr19	29763849	29768749	-	29763849	29782682	A5SS	ENSMUST00000175726.8	novel	0.14	1	6	1	6	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.14	2	12	2	12	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	ENSMUSG00000046138.16	9930021J03Rik	chr19	protein_coding	RIKEN cDNA 9930021J03 gene
novel_NIR_9750	chr19	30016697	30048643	+	30016697	30033635	3pMXE	ENSMUST00000134518.8	novel	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.15	5	28	5	28	y	0.00	0	34	0	34	n	0.08	3	34	3	34	n	0.05	1	20	1	20	n	0.00	0	23	0	23	n	0.00	0	24	0	24	n	0.00	0	26	0	26	n	0.00	0	31	0	31	n	0.08	2	23	2	23	n	0.05	2	36	2	36	n	ENSMUSG00000024817.14	Uhrf2	chr19	protein_coding	ubiquitin-like, containing PHD and RING finger domains 2
novel_NIR_9751	chr19	32079027	32085223	-	32079027	32080419	5pMXE	ENSMUST00000236504.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024887.11	Asah2	chr19	protein_coding	N-acylsphingosine amidohydrolase 2
novel_NIR_9752	chr19	32079027	32085223	-	32079027	32085258	A5SS	ENSMUST00000237104.2	novel	0.17	1	5	1	5	n	-	-	-	-	-	-	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.16	3	16	3	16	y	0.11	1	8	1	8	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.06	1	15	1	15	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	ENSMUSG00000024887.11	Asah2	chr19	protein_coding	N-acylsphingosine amidohydrolase 2
novel_NIR_9753	chr19	32107094	32133970	-	32107094;32120263	32120146;32133970	ES	ENSMUST00000236410.2	novel	0.00	0	8.0	0	16;0	n	0.00	0	5.0	0	10;0	n	0.00	0	43.5	0	85;2	n	0.00	0	6.0	0	12;0	n	0.21	2	7.5	2	15;0	y	0.00	0	14.0	0	28;0	n	0.00	0	16.0	0	31;1	n	0.00	0	15.0	0	30;0	n	0.00	0	4.0	0	8;0	n	0.00	0	8.5	0	17;0	n	0.00	0	6.5	0	13;0	n	0.00	0	9.5	0	19;0	n	ENSMUSG00000040451.19	Sgms1	chr19	protein_coding	sphingomyelin synthase 1
novel_NIR_9754	chr19	32120263	32200909	-	32137763	32200909	3pMXE	ENSMUST00000124012.8	novel	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	32	0	32	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.14	1	6	1	6	n	0.00	0	32	0	32	n	0.22	2	7	2	7	y	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	14	0	14	n	0.00	0	18	0	18	n	ENSMUSG00000040451.19	Sgms1	chr19	protein_coding	sphingomyelin synthase 1
novel_NIR_9755	chr19	32120263	32200909	-	32196541	32200909	3pMXE	ENSMUST00000149934.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040451.19	Sgms1	chr19	protein_coding	sphingomyelin synthase 1
novel_NIR_9756	chr19	32137763	32163321	-	32137763	32173705	A5SS	ENSMUST00000151822.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040451.19	Sgms1	chr19	protein_coding	sphingomyelin synthase 1
novel_NIR_9757	chr19	32137763	32171323	-	32137763	32173705	A5SS	ENSMUST00000151822.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040451.19	Sgms1	chr19	protein_coding	sphingomyelin synthase 1
novel_NIR_9758	chr19	32137763	32171323	-	32137763	32188228	A5SS	ENSMUST00000151289.9	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.04	2	47	2	47	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	29	0	29	n	0.10	1	9	1	9	n	0.00	0	12	0	12	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000040451.19	Sgms1	chr19	protein_coding	sphingomyelin synthase 1
novel_NIR_9759	chr19	32200990	32266941	-	32200990	32216143	5pMXE	ENSMUST00000149107.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040451.19	Sgms1	chr19	protein_coding	sphingomyelin synthase 1
novel_NIR_9760	chr19	32267031	32324361	-	32267031	32300437	5pMXE	ENSMUST00000141655.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.67	2	1	2	1	y	ENSMUSG00000040451.19	Sgms1	chr19	protein_coding	sphingomyelin synthase 1
novel_NIR_9761	chr19	32267031	32324361	-	32267031	32326093	A5SS	ENSMUST00000142618.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000040451.19	Sgms1	chr19	protein_coding	sphingomyelin synthase 1
novel_NIR_9762	chr19	32267031	32324361	-	32267031	32329345	A5SS	ENSMUST00000099514.10	novel	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.00	0	19	0	19	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.25	1	3	1	3	n	0.18	2	9	2	9	y	ENSMUSG00000040451.19	Sgms1	chr19	protein_coding	sphingomyelin synthase 1
novel_NIR_9763	chr19	32288155	32329345	-	32267031	32329345	A3SS	ENSMUST00000099514.10	novel	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.25	2	6	2	6	y	0.00	0	19	0	19	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	ENSMUSG00000040451.19	Sgms1	chr19	protein_coding	sphingomyelin synthase 1
novel_NIR_9764	chr19	32521046	32530056	+	32521046;32523540	32523345;32530056	ES	ENSMUST00000237957.2	novel	0.96	11	0.5	11	1;0	y	0.57	2	1.5	2	1;2	y	0.00	0	1.0	0	0;2	n	0.72	19	7.5	19	9;6	y	0.90	9	1.0	9	1;1	y	0.00	0	0.5	0	1;0	n	0.57	10	7.5	10	10;5	y	-	-	-	-	-	-	0.88	14	2.0	14	1;3	y	0.58	7	5.0	7	9;1	y	0.83	15	3.0	15	4;2	y	0.95	10	0.5	10	1;0	y	ENSMUSG00000118168.2	Gm36419	chr19	lncRNA	predicted gene, 36419
novel_NIR_9765	chr19	32521046	32534455	+	32521046	32523345	A3SS&ES	ENSMUST00000237957.2	novel	0.88	7	1	7	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.40	6	9	6	9	y	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.66	19	10	19	10	y	-	-	-	-	-	-	0.90	9	1	9	1	y	0.40	6	9	6	9	y	0.73	11	4	11	4	y	0.80	4	1	4	1	y	ENSMUSG00000118168.2	Gm36419	chr19	lncRNA	predicted gene, 36419
novel_NIR_9766	chr19	32530110	32534455	+	32530110	32539913	A3SS	ENSMUST00000237957.2	novel	0.62	5	3	5	3	y	0.65	13	7	13	7	y	1.00	1	0	1	0	n	0.50	3	3	3	3	y	0.57	4	3	4	3	y	1.00	1	0	1	0	n	0.55	6	5	6	5	y	-	-	-	-	-	-	0.86	12	2	12	2	y	0.65	13	7	13	7	y	0.78	18	5	18	5	y	0.00	0	8	0	8	n	ENSMUSG00000118168.2	Gm36419	chr19	lncRNA	predicted gene, 36419
novel_NIR_9767	chr19	32604788	32611286	+	32573275	32611286	A5SS	ENSMUST00000235594.2	novel	0.07	2	25	2	25	n	0.04	1	22	1	22	n	0.00	0	28	0	28	n	0.11	6	51	6	51	n	0.16	6	31	6	31	y	0.00	0	21	0	21	n	0.04	2	43	2	43	n	0.00	0	18	0	18	n	0.05	2	36	2	36	n	0.07	5	69	5	69	n	0.00	0	45	0	45	n	0.05	2	42	2	42	n	ENSMUSG00000024899.8	Papss2	chr19	protein_coding	3'-phosphoadenosine 5'-phosphosulfate synthase 2
novel_NIR_9768	chr19	32684409	32690151	-	32684409	32692291	A5SS	ENSMUST00000236985.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000013662.7	Atad1	chr19	protein_coding	ATPase family, AAA domain containing 1
novel_NIR_9769	chr19	32684409	32690151	-	32684409	32717042	A5SS	ENSMUST00000236701.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000013662.7	Atad1	chr19	protein_coding	ATPase family, AAA domain containing 1
novel_NIR_9770	chr19	33075607	33076987	+	33068002	33076987	A5SS	ENSMUST00000236508.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	ENSMUSG00000117914.2	Gm29863	chr19	lncRNA	predicted gene, 29863
novel_NIR_9771	chr19	3312144	3312348	-	3312144	3314811	A5SS	ENSMUST00000025751.11	novel	0.14	1	6	1	6	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.33	2	4	2	4	y	0.00	0	7	0	7	n	0.50	3	3	3	3	y	0.17	2	10	2	10	y	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.17	1	5	1	5	n	0.17	1	5	1	5	n	0.07	1	13	1	13	n	ENSMUSG00000024831.15	Ighmbp2	chr19	protein_coding	immunoglobulin mu binding protein 2
novel_NIR_9772	chr19	3321700	3324356	-	3321700;3323035	3322888;3324356	ES	ENSMUST00000025751.11	novel	0.00	0	8.5	0	7;10	n	0.00	0	7.5	0	6;9	n	0.00	0	4.0	0	7;1	n	0.00	0	4.5	0	5;4	n	0.00	0	7.0	0	8;6	n	-	-	-	-	-	-	0.12	1	7.5	1	7;8	n	0.00	0	5.0	0	3;7	n	0.00	0	6.0	0	7;5	n	0.19	2	8.5	2	10;7	y	0.20	1	4.0	1	8;0	n	0.00	0	5.5	0	7;4	n	ENSMUSG00000024831.15	Ighmbp2	chr19	protein_coding	immunoglobulin mu binding protein 2
novel_NIR_9773	chr19	33351233	33359767	-	33180048	33359767	A3SS	ENSMUST00000096114.13	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	ENSMUSG00000071573.15	Rnls	chr19	polymorphic_pseudogene	renalase, FAD-dependent amine oxidase
novel_NIR_9774	chr19	3339087	3340963	+	3339087	3342436	A3SS	ENSMUST00000025745.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000024829.13	Mrpl21	chr19	protein_coding	mitochondrial ribosomal protein L21
novel_NIR_9775	chr19	33557974	33560447	-	33557974;33559651	33559453;33560447	ES	ENSMUST00000112508.9	novel	0.40	2	3.0	2	4;2	y	0.00	0	2.0	0	2;2	n	0.29	1	2.5	1	4;1	n	0.00	0	2.0	0	4;0	n	0.00	0	4.5	0	1;8	n	0.00	0	2.5	0	4;1	n	0.00	0	3.0	0	4;2	n	0.00	0	2.0	0	3;1	n	0.00	0	4.0	0	6;2	n	0.00	0	4.0	0	5;3	n	0.00	0	0.5	0	0;1	n	0.00	0	3.5	0	5;2	n	ENSMUSG00000024766.16	Lipo3	chr19	protein_coding	lipase, member O3
novel_NIR_9776	chr19	3374693	3399189	+	3372698	3399189	A5SS	ENSMUST00000237938.2	novel	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	3	0	3	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024900.6	Cpt1a	chr19	protein_coding	carnitine palmitoyltransferase 1a, liver
novel_NIR_9777	chr19	3374693	3399189	+	3383815	3399189	5pMXE	ENSMUST00000237562.2	novel	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000024900.6	Cpt1a	chr19	protein_coding	carnitine palmitoyltransferase 1a, liver
novel_NIR_9778	chr19	3374693	3399189	+	3391872	3399189	5pMXE	ENSMUST00000238015.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024900.6	Cpt1a	chr19	protein_coding	carnitine palmitoyltransferase 1a, liver
novel_NIR_9779	chr19	3378675	3399189	+	3372698	3399189	A5SS	ENSMUST00000237938.2	novel	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024900.6	Cpt1a	chr19	protein_coding	carnitine palmitoyltransferase 1a, liver
novel_NIR_9780	chr19	3378675	3399189	+	3383815	3399189	5pMXE	ENSMUST00000237562.2	novel	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000024900.6	Cpt1a	chr19	protein_coding	carnitine palmitoyltransferase 1a, liver
novel_NIR_9781	chr19	3378675	3399189	+	3391872	3399189	5pMXE	ENSMUST00000238015.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024900.6	Cpt1a	chr19	protein_coding	carnitine palmitoyltransferase 1a, liver
novel_NIR_9782	chr19	34268144	34277422	+	34268144	34284525	A3SS	ENSMUST00000025691.13	novel	0.05	2	40	2	40	n	0.00	0	37	0	37	n	0.12	11	81	11	81	n	0.08	5	55	5	55	n	0.02	2	94	2	94	n	0.10	6	57	6	57	n	0.08	6	70	6	70	n	0.03	2	70	2	70	n	0.08	3	34	3	34	n	0.20	12	48	12	48	y	0.10	5	44	5	44	n	0.07	4	55	4	55	n	ENSMUSG00000024778.14	Fas	chr19	protein_coding	Fas (TNF receptor superfamily member 6)
novel_NIR_9783	chr19	34274241	34284525	+	34277582	34284525	5pMXE	ENSMUST00000236731.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.30	3	7	3	7	y	0.00	0	4	0	4	n	0.29	4	10	4	10	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.25	4	12	4	12	y	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	ENSMUSG00000024778.14	Fas	chr19	protein_coding	Fas (TNF receptor superfamily member 6)
novel_NIR_9784	chr19	3434268	3442103	+	3439333	3442103	5pMXE	ENSMUST00000025840.16	novel	0.00	0	1	0	1	n	0.14	1	6	1	6	n	-	-	-	-	-	-	1.00	13	0	13	0	y	1.00	20	0	20	0	y	-	-	-	-	-	-	1.00	12	0	12	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.95	57	3	57	3	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024905.16	Tesmin	chr19	protein_coding	testis expressed metallothionein like
novel_NIR_9785	chr19	3434268	3442103	+	3439869	3442103	5pMXE	ENSMUST00000127142.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	13	0	13	0	y	1.00	20	0	20	0	y	-	-	-	-	-	-	1.00	12	0	12	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	57	0	57	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024905.16	Tesmin	chr19	protein_coding	testis expressed metallothionein like
novel_NIR_9786	chr19	3435552	3442103	+	3439333	3442103	5pMXE	ENSMUST00000025840.16	novel	0.00	0	1	0	1	n	0.00	0	6	0	6	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024905.16	Tesmin	chr19	protein_coding	testis expressed metallothionein like
novel_NIR_9787	chr19	3435552	3442103	+	3439869	3442103	5pMXE	ENSMUST00000127142.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024905.16	Tesmin	chr19	protein_coding	testis expressed metallothionein like
novel_NIR_9788	chr19	3442261	3445920	+	3442261;3444045	3443925;3445920	ES	ENSMUST00000025840.16	novel	0.00	0	3.0	0	3;3	n	0.00	0	1.0	0	1;1	n	0.00	0	1.5	0	2;1	n	0.43	3	4.0	3	2;6	y	0.00	0	3.5	0	4;3	n	-	-	-	-	-	-	0.00	0	2.0	0	3;1	n	-	-	-	-	-	-	0.00	0	3.0	0	4;2	n	0.50	4	4.0	4	3;5	y	-	-	-	-	-	-	0.50	1	1.0	1	0;2	n	ENSMUSG00000024905.16	Tesmin	chr19	protein_coding	testis expressed metallothionein like
novel_NIR_9789	chr19	34560767	34564461	+	34561004	34564461	5pMXE	ENSMUST00000102825.4	novel	0.00	0	20	0	20	n	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.25	2	6	2	6	y	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	ENSMUSG00000074896.4	Ifit3	chr19	protein_coding	interferon-induced protein with tetratricopeptide repeats 3
novel_NIR_9790	chr19	34561004;34563780	34563674;34564461	+	34561004	34564461	cassetteExon	ENSMUST00000102825.4	novel	0.07	1.5	20	1;2	20	n	0.00	0.0	5	0;0	5	n	0.00	0.0	14	0;0	14	n	0.03	0.5	14	0;1	14	n	0.16	1.5	8	2;1	8	n	0.00	0.0	2	0;0	2	n	0.14	1.0	6	1;1	6	n	-	-	-	-	-	-	0.07	0.5	7	1;0	7	n	0.07	0.5	7	1;0	7	n	0.05	0.5	9	0;1	9	n	0.33	2.5	5	3;2	5	y	ENSMUSG00000074896.4	Ifit3	chr19	protein_coding	interferon-induced protein with tetratricopeptide repeats 3
novel_NIR_9791	chr19	34616553	34618002	-	34607218	34618002	A3SS	ENSMUST00000087357.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000067297.6	Ifit1bl2	chr19	protein_coding	interferon induced protein with tetratricopeptide repeats 1B like 2
novel_NIR_9792	chr19	34668291	34686372	-	34668291	34668829	5pMXE	ENSMUST00000235650.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000009378.5	Slc16a12	chr19	protein_coding	solute carrier family 16 (monocarboxylic acid transporters), member 12
novel_NIR_9793	chr19	34929017	34930271	+	34929029	34930271	A5SS	ENSMUST00000087341.7	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024795.12	Kif20b	chr19	protein_coding	kinesin family member 20B
novel_NIR_9794	chr19	3523848	3528278	-	3523815	3528278	A3SS	ENSMUST00000225624.2	novel	0.10	1	9	1	9	n	0.10	1	9	1	9	n	0.21	4	15	4	15	y	0.15	3	17	3	17	y	0.28	11	29	11	29	y	0.12	2	15	2	15	n	0.19	4	17	4	17	y	0.07	1	14	1	14	n	0.11	1	8	1	8	n	0.38	5	8	5	8	y	0.17	2	10	2	10	y	0.22	4	14	4	14	y	ENSMUSG00000024908.16	Ppp6r3	chr19	protein_coding	protein phosphatase 6, regulatory subunit 3
novel_NIR_9795	chr19	36602745	36603062	-	36602745	36603241	A5SS	ENSMUST00000147754.8	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.33	3	6	3	6	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000087579.8	Hectd2os	chr19	lncRNA	Hectd2, opposite strand
novel_NIR_9796	chr19	36602745	36603062	-	36602745	36623084	A5SS	ENSMUST00000149601.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.60	3	2	3	2	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000087579.8	Hectd2os	chr19	lncRNA	Hectd2, opposite strand
novel_NIR_9797	chr19	36602745	36603152	-	36602745	36603241	A5SS	ENSMUST00000147754.8	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.40	4	6	4	6	y	0.00	0	3	0	3	n	0.29	2	5	2	5	y	ENSMUSG00000087579.8	Hectd2os	chr19	lncRNA	Hectd2, opposite strand
novel_NIR_9798	chr19	36602745	36603152	-	36602745	36603359	A5SS	ENSMUST00000129953.2	novel	0.00	0	5	0	5	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	18	0	18	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	15	0	15	n	-	-	-	-	-	-	0.00	0	19	0	19	n	0.12	4	30	4	30	n	0.00	0	7	0	7	n	0.18	2	9	2	9	y	ENSMUSG00000087579.8	Hectd2os	chr19	lncRNA	Hectd2, opposite strand
novel_NIR_9799	chr19	36602745	36603152	-	36602745	36623084	A5SS	ENSMUST00000149601.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.67	4	2	4	2	y	0.00	0	1	0	1	n	0.50	2	2	2	2	y	ENSMUSG00000087579.8	Hectd2os	chr19	lncRNA	Hectd2, opposite strand
novel_NIR_9800	chr19	36602745	36603231	-	36602745	36603241	A5SS	ENSMUST00000147754.8	novel	0.25	1	3	1	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	8	8	8	8	y	-	-	-	-	-	-	0.38	3	5	3	5	y	0.57	8	6	8	6	y	0.25	1	3	1	3	n	0.44	4	5	4	5	y	ENSMUSG00000087579.8	Hectd2os	chr19	lncRNA	Hectd2, opposite strand
novel_NIR_9801	chr19	36602745	36603231	-	36602745	36603359	A5SS	ENSMUST00000129953.2	novel	0.17	1	5	1	5	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.05	1	18	1	18	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.35	8	15	8	15	y	-	-	-	-	-	-	0.14	3	19	3	19	n	0.21	8	30	8	30	y	0.12	1	7	1	7	n	0.31	4	9	4	9	y	ENSMUSG00000087579.8	Hectd2os	chr19	lncRNA	Hectd2, opposite strand
novel_NIR_9802	chr19	36602745	36603231	-	36602745	36623084	A5SS	ENSMUST00000149601.8	novel	0.50	1	1	1	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.80	8	2	8	2	y	0.00	0	3	0	3	n	0.75	3	1	3	1	y	0.80	8	2	8	2	y	0.50	1	1	1	1	n	0.67	4	2	4	2	y	ENSMUSG00000087579.8	Hectd2os	chr19	lncRNA	Hectd2, opposite strand
novel_NIR_9803	chr19	36623165	36623854	-	36623165	36635828	A5SS	ENSMUST00000149601.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	3	3	3	3	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000087579.8	Hectd2os	chr19	lncRNA	Hectd2, opposite strand
novel_NIR_9804	chr19	36623165	36623854	-	36623165	36662927	A5SS	ENSMUST00000142067.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000087579.8	Hectd2os	chr19	lncRNA	Hectd2, opposite strand
novel_NIR_9805	chr19	36711754	36774433	-	36711754	36713953	5pMXE	ENSMUST00000087321.4	novel	0.00	0	20	0	20	n	0.04	1	23	1	23	n	0.00	0	7	0	7	n	0.00	0	23	0	23	n	0.17	10	49	10	49	y	0.13	2	13	2	13	n	0.00	0	38	0	38	n	0.00	0	21	0	21	n	0.02	1	56	1	56	n	0.01	1	69	1	69	n	0.00	0	39	0	39	n	0.03	1	33	1	33	n	ENSMUSG00000067279.4	Ppp1r3c	chr19	protein_coding	protein phosphatase 1, regulatory subunit 3C
novel_NIR_9806	chr19	36842836	36843352	+	36836576	36843352	A5SS	ENSMUST00000167724.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000024811.12	Tnks2	chr19	protein_coding	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2
novel_NIR_9807	chr19	37152385	37184941	-	37152385	37152465	5pMXE	ENSMUST00000128642.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.67	2	1	2	1	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.67	2	1	2	1	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000039652.17	Cpeb3	chr19	protein_coding	cytoplasmic polyadenylation element binding protein 3
novel_NIR_9808	chr19	37152385	37184941	-	37152385	37152613	A5SS&ES	ENSMUST00000131917.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.67	2	1	2	1	y	1.00	2	0	2	0	y	0.33	1	2	1	2	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.20	1	4	1	4	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000039652.17	Cpeb3	chr19	protein_coding	cytoplasmic polyadenylation element binding protein 3
novel_NIR_9809	chr19	37152385	37184941	-	37152385	37152936	5pMXE	ENSMUST00000154376.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000039652.17	Cpeb3	chr19	protein_coding	cytoplasmic polyadenylation element binding protein 3
novel_NIR_9810	chr19	37152385	37184941	-	37152385	37153293	5pMXE	ENSMUST00000142973.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	0.50	1	1	1	1	n	0.67	2	1	2	1	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000039652.17	Cpeb3	chr19	protein_coding	cytoplasmic polyadenylation element binding protein 3
novel_NIR_9811	chr19	37152385	37184941	-	37152385	37155308	5pMXE	ENSMUST00000133988.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.67	2	1	2	1	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000039652.17	Cpeb3	chr19	protein_coding	cytoplasmic polyadenylation element binding protein 3
novel_NIR_9812	chr19	37152385	37184941	-	37152385	37175388	5pMXE	ENSMUST00000123727.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000039652.17	Cpeb3	chr19	protein_coding	cytoplasmic polyadenylation element binding protein 3
novel_NIR_9813	chr19	37152385	37184941	-	37152385	37184632	5pMXE	ENSMUST00000126188.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	0.33	1	2	1	2	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.60	3	2	3	2	y	0.50	1	1	1	1	n	0.33	1	2	1	2	n	0.50	1	1	1	1	n	ENSMUSG00000039652.17	Cpeb3	chr19	protein_coding	cytoplasmic polyadenylation element binding protein 3
novel_NIR_9814	chr19	37152385	37184941	-	37152385	37184694	5pMXE	ENSMUST00000079754.11	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.67	2	1	2	1	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.40	2	3	2	3	y	0.50	1	1	1	1	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.50	1	1	1	1	n	ENSMUSG00000039652.17	Cpeb3	chr19	protein_coding	cytoplasmic polyadenylation element binding protein 3
novel_NIR_9815	chr19	37267587	37268069	-	37267587	37273282	A5SS	ENSMUST00000154339.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000056999.17	Ide	chr19	protein_coding	insulin degrading enzyme
novel_NIR_9816	chr19	37308011	37321324	-	37308011	37315208	5pMXE	ENSMUST00000154308.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	8	0	8	0	y	1.00	8	0	8	0	y	1.00	8	0	8	0	y	1.00	6	0	6	0	y	1.00	6	0	6	0	y	1.00	5	0	5	0	y	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	13	0	13	0	y	-	-	-	-	-	-	ENSMUSG00000056999.17	Ide	chr19	protein_coding	insulin degrading enzyme
novel_NIR_9817	chr19	37308011	37321324	-	37308011	37339913	A5SS	ENSMUST00000131070.3	novel	0.05	3	54	3	54	n	0.00	0	31	0	31	n	0.14	8	48	8	48	n	0.07	8	101	8	101	n	0.12	8	60	8	60	n	0.08	6	65	6	65	n	0.11	6	48	6	48	n	0.08	5	60	5	60	n	0.08	5	60	5	60	n	0.05	3	55	3	55	n	0.16	13	67	13	67	y	0.00	0	42	0	42	n	ENSMUSG00000056999.17	Ide	chr19	protein_coding	insulin degrading enzyme
novel_NIR_9818	chr19	37308011	37339547	-	37308011	37315208	5pMXE	ENSMUST00000154308.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	10	0	10	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000056999.17	Ide	chr19	protein_coding	insulin degrading enzyme
novel_NIR_9819	chr19	37308011	37339781	-	37308011	37315208	5pMXE	ENSMUST00000154308.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000056999.17	Ide	chr19	protein_coding	insulin degrading enzyme
novel_NIR_9820	chr19	37308011	37339917	-	37308011	37315208	5pMXE	ENSMUST00000154308.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000056999.17	Ide	chr19	protein_coding	insulin degrading enzyme
novel_NIR_9821	chr19	37423010	37425637	+	37425302	37425637	5pMXE	ENSMUST00000128184.3	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000024986.13	Hhex	chr19	protein_coding	hematopoietically expressed homeobox
novel_NIR_9822	chr19	37423082	37425637	+	37425302	37425637	5pMXE	ENSMUST00000128184.3	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	1.00	4	0	4	0	y	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	ENSMUSG00000024986.13	Hhex	chr19	protein_coding	hematopoietically expressed homeobox
novel_NIR_9823	chr19	3758436	3764428	+	3758436	3764047	A3SS	ENSMUST00000237955.2	novel	0.00	0	7	0	7	n	0.17	2	10	2	10	y	0.05	2	35	2	35	n	0.08	1	11	1	11	n	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	ENSMUSG00000035372.3	1810055G02Rik	chr19	protein_coding	RIKEN cDNA 1810055G02 gene
novel_NIR_9824	chr19	3758436	3764428	+	3758436	3764407	A3SS	ENSMUST00000237320.2	novel	0.00	0	22	0	22	n	0.17	2	10	2	10	y	0.10	2	19	2	19	n	0.04	1	24	1	24	n	0.00	0	26	0	26	n	0.00	0	28	0	28	n	0.00	0	16	0	16	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	ENSMUSG00000035372.3	1810055G02Rik	chr19	protein_coding	RIKEN cDNA 1810055G02 gene
novel_NIR_9825	chr19	3758436	3764428	+	3758436	3765638	A3SS	ENSMUST00000235295.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035372.3	1810055G02Rik	chr19	protein_coding	RIKEN cDNA 1810055G02 gene
novel_NIR_9826	chr19	3764115	3764404	+	3758508	3764404	A5SS	ENSMUST00000235837.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035372.3	1810055G02Rik	chr19	protein_coding	RIKEN cDNA 1810055G02 gene
novel_NIR_9827	chr19	38210408	38212410	-	38210398	38212410	A3SS	ENSMUST00000238007.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000054237.7	Fra10ac1	chr19	protein_coding	FRA10AC1 homolog (human)
novel_NIR_9828	chr19	38210520	38212410	-	38210398	38212410	A3SS	ENSMUST00000238007.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000054237.7	Fra10ac1	chr19	protein_coding	FRA10AC1 homolog (human)
novel_NIR_9829	chr19	3833775	3836389	+	3818227	3836389	A5SS	ENSMUST00000176407.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045098.20	Kmt5b	chr19	protein_coding	lysine methyltransferase 5B
novel_NIR_9830	chr19	3833775	3836389	+	3818340	3836389	A5SS	ENSMUST00000052699.13	novel	0.33	2	4	2	4	y	0.00	0	1	0	1	n	0.00	0	20	0	20	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.33	2	4	2	4	y	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.31	4	9	4	9	y	0.00	0	3	0	3	n	0.00	0	7	0	7	n	ENSMUSG00000045098.20	Kmt5b	chr19	protein_coding	lysine methyltransferase 5B
novel_NIR_9831	chr19	3833775	3836389	+	3832279	3836389	A5SS	ENSMUST00000113974.11	novel	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.25	2	6	2	6	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.40	4	6	4	6	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	ENSMUSG00000045098.20	Kmt5b	chr19	protein_coding	lysine methyltransferase 5B
novel_NIR_9832	chr19	3833775	3836389	+	3832852	3836389	A5SS	ENSMUST00000113968.9	novel	0.25	2	6	2	6	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.36	4	7	4	7	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000045098.20	Kmt5b	chr19	protein_coding	lysine methyltransferase 5B
novel_NIR_9833	chr19	38640555	38649563	+	38640555	38686894	A3SS	ENSMUST00000182481.8	novel	0.50	3	3	3	3	y	0.00	0	3	0	3	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.17	2	10	2	10	y	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.14	1	6	1	6	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	ENSMUSG00000024998.18	Plce1	chr19	protein_coding	phospholipase C, epsilon 1
novel_NIR_9834	chr19	38710412	38713145	+	38710364	38713145	A5SS	ENSMUST00000182481.8	novel	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	17	0	17	n	0.00	0	20	0	20	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.14	1	6	1	6	n	0.14	1	6	1	6	n	0.00	0	4	0	4	n	0.36	4	7	4	7	y	0.00	0	9	0	9	n	0.29	2	5	2	5	y	ENSMUSG00000024998.18	Plce1	chr19	protein_coding	phospholipase C, epsilon 1
novel_NIR_9835	chr19	38825890	38836347	+	38825890	38854060	A3SS	ENSMUST00000037302.6	novel	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.05	1	19	1	19	n	0.31	4	9	4	9	y	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.09	1	10	1	10	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	ENSMUSG00000048720.9	Tbc1d12	chr19	protein_coding	TBC1D12: TBC1 domain family, member 12
novel_NIR_9836	chr19	38878474	38884431	+	38871218	38884431	A5SS	ENSMUST00000037302.6	novel	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	21	0	21	n	0.00	0	6	0	6	n	0.00	0	19	0	19	n	0.33	2	4	2	4	y	0.00	0	17	0	17	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	17	0	17	n	0.00	0	6	0	6	n	0.00	0	24	0	24	n	ENSMUSG00000048720.9	Tbc1d12	chr19	protein_coding	TBC1D12: TBC1 domain family, member 12
novel_NIR_9837	chr19	38983995	38986587	+	38983995	38986874	A3SS	ENSMUST00000225458.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000114610.2	Cyp2c52-ps	chr19	unprocessed_pseudogene	cytochrome P450, family 2, subfamily c, polypeptide 52, pseudogene
novel_NIR_9838	chr19	38993823	38999464	+	38995657	38999464	5pMXE	ENSMUST00000025966.5	novel	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.60	3	2	3	2	y	-	-	-	-	-	-	0.00	0	16	0	16	n	ENSMUSG00000025002.6	Cyp2c55	chr19	protein_coding	cytochrome P450, family 2, subfamily c, polypeptide 55
novel_NIR_9839	chr19	3914759	3924769	+	3914759	3921003	A3SS&ES	ENSMUST00000128694.8	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.09	1	10	1	10	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.33	3	6	3	6	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000024843.16	Chka	chr19	protein_coding	choline kinase alpha
novel_NIR_9840	chr19	3914759	3924769	+	3914759	3925735	A3SS	ENSMUST00000124219.2	novel	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	44	0	44	n	0.00	0	5	0	5	n	0.00	0	24	0	24	n	0.11	1	8	1	8	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.17	3	15	3	15	y	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	ENSMUSG00000024843.16	Chka	chr19	protein_coding	choline kinase alpha
novel_NIR_9841	chr19	3914759	3924769	+	3914759	3932010	A3SS	ENSMUST00000125640.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024843.16	Chka	chr19	protein_coding	choline kinase alpha
novel_NIR_9842	chr19	3914759	3924769	+	3914759	3934472	A3SS	ENSMUST00000072055.13	novel	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.00	0	16	0	16	n	0.08	1	12	1	12	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.23	3	10	3	10	y	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.00	0	17	0	17	n	ENSMUSG00000024843.16	Chka	chr19	protein_coding	choline kinase alpha
novel_NIR_9843	chr19	3921062	3924769	+	3921062	3925735	A3SS	ENSMUST00000128694.8	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	0.40	2	3	2	3	y	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000024843.16	Chka	chr19	protein_coding	choline kinase alpha
novel_NIR_9844	chr19	3924798	3925367	+	3924798	3925735	A3SS	ENSMUST00000153343.2	novel	0.75	3	1	3	1	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	1.00	7	0	7	0	y	0.60	3	2	3	2	y	0.25	1	3	1	3	n	-	-	-	-	-	-	0.17	1	5	1	5	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	ENSMUSG00000024843.16	Chka	chr19	protein_coding	choline kinase alpha
novel_NIR_9845	chr19	39279335	39279514	+	39279335	39279482	A3SS	ENSMUST00000177087.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	27	0	27	0	y	0.00	0	1	0	1	n	ENSMUSG00000003053.18	Cyp2c29	chr19	protein_coding	cytochrome P450, family 2, subfamily c, polypeptide 29
novel_NIR_9846	chr19	39424674	39425958	-	39424674	39426658	A5SS	ENSMUST00000035488.3	novel	0.16	15	76	15	76	n	0.25	20	60	20	60	n	0.00	0	2	0	2	n	0.20	21	85	21	85	n	0.12	10	74	10	74	n	-	-	-	-	-	-	0.23	30	101	30	101	n	0.43	3	4	3	4	y	0.25	16	48	16	48	n	0.23	26	89	26	89	n	0.29	22	54	22	54	n	0.13	9	60	9	60	n	ENSMUSG00000032808.3	Cyp2c38	chr19	protein_coding	cytochrome P450, family 2, subfamily c, polypeptide 38
novel_NIR_9847	chr19	39424674;39425990	39425958;39426658	-	39424674	39426658	cassetteExon	ENSMUST00000035488.3	novel	0.12	10.0	76	15;5	76	n	0.14	10.0	60	20;0	60	n	0.00	0.0	2	0;0	2	n	0.11	10.5	85	21;0	85	n	0.07	6.0	74	10;2	74	n	-	-	-	-	-	-	0.14	16.0	101	30;2	101	n	0.27	1.5	4	3;0	4	n	0.22	13.5	48	16;11	48	y	0.13	13.0	89	26;0	89	n	0.20	13.5	54	22;5	54	y	0.07	4.5	60	9;0	60	n	ENSMUSG00000032808.3	Cyp2c38	chr19	protein_coding	cytochrome P450, family 2, subfamily c, polypeptide 38
novel_NIR_9848	chr19	39424674;39425998	39425958;39426658	-	39424674	39426658	cassetteExon	ENSMUST00000035488.3	novel	0.10	8.5	76	15;2	76	n	0.15	10.5	60	20;1	60	n	0.00	0.0	2	0;0	2	n	0.14	14.0	85	21;7	85	n	0.09	7.0	74	10;4	74	n	-	-	-	-	-	-	0.17	21.0	101	30;12	101	y	0.27	1.5	4	3;0	4	n	0.17	10.0	48	16;4	48	y	0.17	18.5	89	26;11	89	y	0.18	11.5	54	22;1	54	n	0.10	6.5	60	9;4	60	n	ENSMUSG00000032808.3	Cyp2c38	chr19	protein_coding	cytochrome P450, family 2, subfamily c, polypeptide 38
novel_NIR_9849	chr19	3947169	3947579	-	3947169	3947758	A5SS	ENSMUST00000135070.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	6	0	6	0	y	ENSMUSG00000001750.17	Tcirg1	chr19	protein_coding	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3
novel_NIR_9850	chr19	3947169	3947583	-	3947169	3947758	A5SS	ENSMUST00000135070.8	novel	1.00	4	0	4	0	y	1.00	6	0	6	0	y	1.00	9	0	9	0	y	1.00	5	0	5	0	y	0.89	8	1	8	1	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	ENSMUSG00000001750.17	Tcirg1	chr19	protein_coding	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3
novel_NIR_9851	chr19	39490859	39501617	+	39499482	39501617	5pMXE	ENSMUST00000025968.5	novel	0.30	3	7	3	7	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	ENSMUSG00000025003.7	Cyp2c39	chr19	protein_coding	cytochrome P450, family 2, subfamily c, polypeptide 39
novel_NIR_9852	chr19	39502093	39525251	+	39502093	39525180	A3SS	ENSMUST00000025968.5	novel	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	19	0	19	n	0.00	0	7	0	7	n	0.11	1	8	1	8	n	0.50	2	2	2	2	y	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	ENSMUSG00000025003.7	Cyp2c39	chr19	protein_coding	cytochrome P450, family 2, subfamily c, polypeptide 39
novel_NIR_9853	chr19	39597705	39601272	-	39597705	39604064	A5SS	ENSMUST00000067328.7	novel	0.00	0	62	0	62	n	0.00	0	66	0	66	n	0.00	0	13	0	13	n	0.00	0	71	0	71	n	0.00	0	67	0	67	n	0.40	2	3	2	3	y	0.00	0	71	0	71	n	0.00	0	14	0	14	n	0.00	0	73	0	73	n	0.00	0	93	0	93	n	0.00	0	78	0	78	n	0.00	0	84	0	84	n	ENSMUSG00000062624.6	Cyp2c67	chr19	protein_coding	cytochrome P450, family 2, subfamily c, polypeptide 67
novel_NIR_9854	chr19	3961746	3961992	-	3961746	3962203	A5SS	ENSMUST00000236801.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000059734.8	Ndufs8	chr19	protein_coding	NADH:ubiquinone oxidoreductase core subunit S8
novel_NIR_9855	chr19	3961746	3961992	-	3961746	3962470	A5SS	ENSMUST00000235847.2	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000059734.8	Ndufs8	chr19	protein_coding	NADH:ubiquinone oxidoreductase core subunit S8
novel_NIR_9856	chr19	3961746	3962501	-	3961746	3962203	5pMXE	ENSMUST00000236801.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000059734.8	Ndufs8	chr19	protein_coding	NADH:ubiquinone oxidoreductase core subunit S8
novel_NIR_9857	chr19	3961746	3962501	-	3961746	3962470	A5SS	ENSMUST00000235847.2	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	1.00	1	0	1	0	n	ENSMUSG00000059734.8	Ndufs8	chr19	protein_coding	NADH:ubiquinone oxidoreductase core subunit S8
novel_NIR_9858	chr19	3965393	3968067	-	3965393	3968042	A5SS	ENSMUST00000051803.8	novel	0.00	0	9	0	9	n	0.00	0	23	0	23	n	0.00	0	18	0	18	n	0.20	2	8	2	8	y	0.00	0	18	0	18	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	ENSMUSG00000024885.10	Aldh3b1	chr19	protein_coding	aldehyde dehydrogenase 3 family, member B1
novel_NIR_9859	chr19	39724151	39727497	-	39724181	39727497	A3SS	ENSMUST00000099472.4	novel	0.08	25	290	25	290	n	0.06	15	238	15	238	n	0.00	0	12	0	12	n	0.06	25	381	25	381	n	0.14	51	324	51	324	n	0.18	4	18	4	18	y	0.09	31	321	31	321	n	0.05	4	69	4	69	n	0.06	26	381	26	381	n	0.14	65	393	65	393	n	0.04	16	352	16	352	n	0.06	32	545	32	545	n	ENSMUSG00000074882.4	Cyp2c68	chr19	protein_coding	cytochrome P450, family 2, subfamily c, polypeptide 68
novel_NIR_9860	chr19	39766545	39775191	-	39766545	39775203	A5SS	ENSMUST00000160476.9	novel	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	15	0	15	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.43	3	4	3	4	y	-	-	-	-	-	-	0.07	1	14	1	14	n	0.00	0	8	0	8	n	0.33	3	6	3	6	y	0.00	0	10	0	10	n	ENSMUSG00000025004.17	Cyp2c40	chr19	protein_coding	cytochrome P450, family 2, subfamily c, polypeptide 40
novel_NIR_9861	chr19	39766545	39795610	-	39792374	39795610	3pMXE	ENSMUST00000162434.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	11	0	11	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.18	2	9	2	9	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	ENSMUSG00000025004.17	Cyp2c40	chr19	protein_coding	cytochrome P450, family 2, subfamily c, polypeptide 40
novel_NIR_9862	chr19	39792344	39795610	-	39792247	39795610	A3SS	ENSMUST00000163090.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000025004.17	Cyp2c40	chr19	protein_coding	cytochrome P450, family 2, subfamily c, polypeptide 40
novel_NIR_9863	chr19	39792344	39795610	-	39792303	39795610	A3SS	ENSMUST00000162630.3	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.75	3	1	3	1	y	0.33	1	2	1	2	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	ENSMUSG00000025004.17	Cyp2c40	chr19	protein_coding	cytochrome P450, family 2, subfamily c, polypeptide 40
novel_NIR_9864	chr19	39792344	39795610	-	39792374	39795610	A3SS	ENSMUST00000160476.9	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	11	0	11	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.25	3	9	3	9	y	0.33	1	2	1	2	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	ENSMUSG00000025004.17	Cyp2c40	chr19	protein_coding	cytochrome P450, family 2, subfamily c, polypeptide 40
novel_NIR_9865	chr19	40036089	40059890	-	40036089;40058788	40058612;40059890	ES	ENSMUST00000048959.5	novel	0.00	0	452.0	0	485;419	n	0.00	0	334.5	0	396;273	n	0.19	2	8.5	2	9;8	y	0.04	20	512.0	20	516;508	n	0.04	9	211.0	9	240;182	n	0.00	0	4.0	0	2;6	n	0.03	8	297.0	8	327;267	n	0.00	0	7.5	0	9;6	n	0.02	14	557.0	14	595;519	n	0.00	0	629.5	0	662;597	n	0.04	22	491.0	22	540;442	n	0.03	10	322.0	10	323;321	n	ENSMUSG00000067225.3	Cyp2c54	chr19	protein_coding	cytochrome P450, family 2, subfamily c, polypeptide 54
novel_NIR_9866	chr19	40079549	40079830	+	40079549	40085161	A3SS	ENSMUST00000068094.13	novel	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.71	5	2	5	2	y	-	-	-	-	-	-	ENSMUSG00000054827.13	Cyp2c50	chr19	protein_coding	cytochrome P450, family 2, subfamily c, polypeptide 50
novel_NIR_9867	chr19	40156067	40165163	-	40156067	40175539	A5SS	ENSMUST00000165102.2	novel	0.11	1	8	1	8	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.30	3	7	3	7	y	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.50	1	1	1	1	n	0.18	3	14	3	14	y	0.10	1	9	1	9	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	ENSMUSG00000060613.11	Cyp2c70	chr19	protein_coding	cytochrome P450, family 2, subfamily c, polypeptide 70
novel_NIR_9868	chr19	40156067	40167200	-	40156067	40175539	A5SS	ENSMUST00000165102.2	novel	0.27	3	8	3	8	y	0.45	5	6	5	6	y	0.00	0	9	0	9	n	0.22	2	7	2	7	y	0.29	4	10	4	10	y	0.00	0	2	0	2	n	0.38	3	5	3	5	y	0.00	0	1	0	1	n	0.22	4	14	4	14	y	0.31	4	9	4	9	y	0.10	1	9	1	9	n	0.33	4	8	4	8	y	ENSMUSG00000060613.11	Cyp2c70	chr19	protein_coding	cytochrome P450, family 2, subfamily c, polypeptide 70
novel_NIR_9869	chr19	40156067	40168891	-	40156067	40175539	A5SS	ENSMUST00000165102.2	novel	0.00	0	8	0	8	n	0.14	1	6	1	6	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.38	3	5	3	5	y	0.00	0	1	0	1	n	0.00	0	14	0	14	n	0.18	2	9	2	9	y	0.31	4	9	4	9	y	0.00	0	8	0	8	n	ENSMUSG00000060613.11	Cyp2c70	chr19	protein_coding	cytochrome P450, family 2, subfamily c, polypeptide 70
novel_NIR_9870	chr19	40156067	40172310	-	40156067	40175539	A5SS	ENSMUST00000165102.2	novel	0.33	4	8	4	8	y	0.33	3	6	3	6	y	0.18	2	9	2	9	y	0.00	0	7	0	7	n	0.17	2	10	2	10	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.25	3	9	3	9	y	0.00	0	8	0	8	n	ENSMUSG00000060613.11	Cyp2c70	chr19	protein_coding	cytochrome P450, family 2, subfamily c, polypeptide 70
novel_NIR_9871	chr19	40287965	40296111	-	40287965	40288687	A5SS&ES	ENSMUST00000225710.2	novel	0.67	2	1	2	1	y	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	1.00	1	0	1	0	n	0.10	1	9	1	9	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.75	3	1	3	1	y	0.75	3	1	3	1	y	ENSMUSG00000025006.19	Sorbs1	chr19	protein_coding	sorbin and SH3 domain containing 1
novel_NIR_9872	chr19	40287965	40296111	-	40287965	40298025	A5SS	ENSMUST00000238831.2	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	ENSMUSG00000025006.19	Sorbs1	chr19	protein_coding	sorbin and SH3 domain containing 1
novel_NIR_9873	chr19	40287965	40296140	-	40287965	40288687	A5SS&ES	ENSMUST00000225710.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.50	2	2	2	2	y	0.75	3	1	3	1	y	-	-	-	-	-	-	0.00	0	9	0	9	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000025006.19	Sorbs1	chr19	protein_coding	sorbin and SH3 domain containing 1
novel_NIR_9874	chr19	40287965	40296140	-	40287965	40298025	A5SS	ENSMUST00000238831.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025006.19	Sorbs1	chr19	protein_coding	sorbin and SH3 domain containing 1
novel_NIR_9875	chr19	40288746	40298025	-	40287965	40298025	A3SS	ENSMUST00000238831.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.71	5	2	5	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025006.19	Sorbs1	chr19	protein_coding	sorbin and SH3 domain containing 1
novel_NIR_9876	chr19	40288746	40298025	-	40288097	40298025	A3SS	ENSMUST00000239304.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025006.19	Sorbs1	chr19	protein_coding	sorbin and SH3 domain containing 1
novel_NIR_9877	chr19	40288746	40298025	-	40288746	40300113	A5SS	ENSMUST00000225710.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.83	5	1	5	1	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000025006.19	Sorbs1	chr19	protein_coding	sorbin and SH3 domain containing 1
novel_NIR_9878	chr19	4037305	4037835	+	4037305	4037450	A3SS	ENSMUST00000236739.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024866.11	Acy3	chr19	protein_coding	aspartoacylase (aminoacylase) 3
novel_NIR_9879	chr19	4037305	4038138	+	4037305	4037450	3pMXE	ENSMUST00000236739.2	novel	1.00	9	0	9	0	y	1.00	7	0	7	0	y	1.00	1	0	1	0	n	1.00	14	0	14	0	y	1.00	8	0	8	0	y	-	-	-	-	-	-	1.00	13	0	13	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	9	0	9	0	y	1.00	8	0	8	0	y	1.00	3	0	3	0	y	ENSMUSG00000024866.11	Acy3	chr19	protein_coding	aspartoacylase (aminoacylase) 3
novel_NIR_9880	chr19	40390754	40393894	-	40390754	40439758	A5SS	ENSMUST00000226047.2	novel	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	24	0	24	n	0.00	0	18	0	18	n	0.18	2	9	2	9	y	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.05	1	19	1	19	n	0.00	0	4	0	4	n	0.06	1	16	1	16	n	0.11	1	8	1	8	n	0.00	0	13	0	13	n	ENSMUSG00000025006.19	Sorbs1	chr19	protein_coding	sorbin and SH3 domain containing 1
novel_NIR_9881	chr19	40390754	40393894	-	40390754	40502115	A5SS	ENSMUST00000225148.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000025006.19	Sorbs1	chr19	protein_coding	sorbin and SH3 domain containing 1
novel_NIR_9882	chr19	40390754	40403669	-	40390754	40439758	A5SS	ENSMUST00000226047.2	novel	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.04	1	24	1	24	n	0.05	1	18	1	18	n	0.47	8	9	8	9	y	0.18	2	9	2	9	y	0.11	2	17	2	17	n	0.00	0	19	0	19	n	0.50	4	4	4	4	y	0.00	0	16	0	16	n	0.11	1	8	1	8	n	0.00	0	13	0	13	n	ENSMUSG00000025006.19	Sorbs1	chr19	protein_coding	sorbin and SH3 domain containing 1
novel_NIR_9883	chr19	40390754	40403669	-	40390754	40502115	A5SS	ENSMUST00000225148.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	8	0	8	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000025006.19	Sorbs1	chr19	protein_coding	sorbin and SH3 domain containing 1
novel_NIR_9884	chr19	40409804	40439758	-	40371032	40439758	A3SS	ENSMUST00000223724.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025006.19	Sorbs1	chr19	protein_coding	sorbin and SH3 domain containing 1
novel_NIR_9885	chr19	40409804	40439758	-	40387054	40439758	A3SS	ENSMUST00000224646.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025006.19	Sorbs1	chr19	protein_coding	sorbin and SH3 domain containing 1
novel_NIR_9886	chr19	40409804	40439758	-	40390754	40439758	A3SS	ENSMUST00000226047.2	novel	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	24	0	24	n	0.00	0	18	0	18	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.00	0	19	0	19	n	0.00	0	4	0	4	n	0.16	3	16	3	16	y	0.00	0	8	0	8	n	0.00	0	13	0	13	n	ENSMUSG00000025006.19	Sorbs1	chr19	protein_coding	sorbin and SH3 domain containing 1
novel_NIR_9887	chr19	40439842	40464901	-	40439842	40475941	A5SS	ENSMUST00000224233.2	novel	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.20	1	4	1	4	n	0.20	1	4	1	4	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	ENSMUSG00000025006.19	Sorbs1	chr19	protein_coding	sorbin and SH3 domain containing 1
novel_NIR_9888	chr19	40439842	40464901	-	40439842	40489893	A5SS	ENSMUST00000224247.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	2	2	2	2	y	1.00	1	0	1	0	n	0.33	1	2	1	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000025006.19	Sorbs1	chr19	protein_coding	sorbin and SH3 domain containing 1
novel_NIR_9889	chr19	40439842	40464901	-	40439842	40501815	A5SS	ENSMUST00000225153.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000025006.19	Sorbs1	chr19	protein_coding	sorbin and SH3 domain containing 1
novel_NIR_9890	chr19	40439842	40464901	-	40439842	40502115	A5SS	ENSMUST00000226047.2	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.12	2	14	2	14	n	0.25	1	3	1	3	n	0.10	1	9	1	9	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.20	2	8	2	8	y	ENSMUSG00000025006.19	Sorbs1	chr19	protein_coding	sorbin and SH3 domain containing 1
novel_NIR_9891	chr19	4054816	4056026	+	4054816	4056061	A3SS	ENSMUST00000147806.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	1	0	1	n	ENSMUSG00000024871.12	Doc2g	chr19	protein_coding	double C2, gamma
novel_NIR_9892	chr19	4054816	4056026	+	4054816	4056110	A3SS	ENSMUST00000025806.5	novel	0.00	0	3	0	3	n	0.25	2	6	2	6	y	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	0.25	1	3	1	3	n	0.00	0	6	0	6	n	ENSMUSG00000024871.12	Doc2g	chr19	protein_coding	double C2, gamma
novel_NIR_9893	chr19	40593903	40593999	-	40593903	40594147	A5SS	ENSMUST00000025981.15	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.25	2	6	2	6	y	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000025008.16	Tctn3	chr19	protein_coding	tectonic family member 3
novel_NIR_9894	chr19	40597454	40599738	-	40597454;40597776	40597646;40599738	ES	ENSMUST00000025981.15	novel	0.50	3	3.0	3	4;2	y	0.00	0	3.5	0	5;2	n	0.00	0	8.5	0	7;10	n	0.00	0	2.0	0	0;4	n	0.00	0	3.0	0	2;4	n	0.00	0	0.5	0	1;0	n	0.00	0	2.0	0	3;1	n	0.00	0	1.5	0	1;2	n	0.00	0	1.5	0	1;2	n	0.00	0	2.5	0	1;4	n	0.00	0	1.5	0	0;3	n	0.00	0	1.5	0	2;1	n	ENSMUSG00000025008.16	Tctn3	chr19	protein_coding	tectonic family member 3
novel_NIR_9895	chr19	40713528	40714472	+	40713528	40714466	A3SS	ENSMUST00000134063.8	novel	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.00	0	14	0	14	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000048120.17	Entpd1	chr19	protein_coding	ectonucleoside triphosphate diphosphohydrolase 1
novel_NIR_9896	chr19	40833403	40833522	+	40833403	40833489	A3SS	ENSMUST00000025983.13	novel	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.11	1	8	1	8	n	0.00	0	3	0	3	n	0.12	1	7	1	7	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	3	6	3	6	y	0.00	0	6	0	6	n	0.00	0	1	0	1	n	ENSMUSG00000025010.15	Ccnj	chr19	protein_coding	cyclin J
novel_NIR_9897	chr19	40833403	40833525	+	40833403	40833489	A3SS	ENSMUST00000025983.13	novel	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.20	2	8	2	8	y	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	ENSMUSG00000025010.15	Ccnj	chr19	protein_coding	cyclin J
novel_NIR_9898	chr19	4085661	4090708	-	4090539	4090708	3pMXE	ENSMUST00000042700.12	novel	0.00	0	26	0	26	n	0.00	0	19	0	19	n	0.04	1	26	1	26	n	0.05	1	18	1	18	n	0.04	1	25	1	25	n	0.00	0	24	0	24	n	0.07	3	42	3	42	n	0.05	1	20	1	20	n	0.27	4	11	4	11	y	0.00	0	18	0	18	n	0.02	1	54	1	54	n	0.04	2	45	2	45	n	ENSMUSG00000038155.12	Gstp2	chr19	protein_coding	glutathione S-transferase, pi 2
novel_NIR_9899	chr19	4085823	4090708	-	4090539	4090708	3pMXE	ENSMUST00000042700.12	novel	0.00	0	26	0	26	n	0.00	0	19	0	19	n	0.30	11	26	11	26	y	0.00	0	18	0	18	n	0.11	3	25	3	25	n	0.00	0	24	0	24	n	0.25	14	42	14	42	y	0.00	0	20	0	20	n	0.00	0	11	0	11	n	0.44	14	18	14	18	y	0.00	0	54	0	54	n	0.00	0	45	0	45	n	ENSMUSG00000038155.12	Gstp2	chr19	protein_coding	glutathione S-transferase, pi 2
novel_NIR_9900	chr19	4085931	4086062	-	4085931	4086279	A5SS	ENSMUST00000236311.2	novel	1.00	2	0	2	0	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	8	0	8	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000060803.7	Gstp1	chr19	protein_coding	glutathione S-transferase, pi 1
novel_NIR_9901	chr19	4085931	4086208	-	4085931	4086279	A5SS	ENSMUST00000236311.2	novel	1.00	2	0	2	0	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.60	3	2	3	2	y	0.60	3	2	3	2	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	0.11	1	8	1	8	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000060803.7	Gstp1	chr19	protein_coding	glutathione S-transferase, pi 1
novel_NIR_9902	chr19	4085931	4086334	-	4085931	4086279	A5SS	ENSMUST00000236311.2	novel	1.00	3	0	3	0	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.60	3	2	3	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	8	0	8	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	ENSMUSG00000060803.7	Gstp1	chr19	protein_coding	glutathione S-transferase, pi 1
novel_NIR_9903	chr19	4085931	4086358	-	4085931	4086279	A5SS	ENSMUST00000236311.2	novel	-	-	-	-	-	-	0.44	4	5	4	5	y	1.00	6	0	6	0	y	0.00	0	2	0	2	n	0.60	3	2	3	2	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	0.11	1	8	1	8	n	1.00	5	0	5	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000060803.7	Gstp1	chr19	protein_coding	glutathione S-transferase, pi 1
novel_NIR_9904	chr19	4085931	4087104	-	4085931	4086279	5pMXE	ENSMUST00000236311.2	novel	-	-	-	-	-	-	0.00	0	5	0	5	n	1.00	3	0	3	0	y	0.50	2	2	2	2	y	0.33	1	2	1	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	8	0	8	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000060803.7	Gstp1	chr19	protein_coding	glutathione S-transferase, pi 1
novel_NIR_9905	chr19	4085931	4091398	-	4085931	4086279	5pMXE	ENSMUST00000236311.2	novel	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	8	0	8	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000060803.7	Gstp1	chr19	protein_coding	glutathione S-transferase, pi 1
novel_NIR_9906	chr19	4086765	4090708	-	4090539	4090708	3pMXE	ENSMUST00000042700.12	novel	0.16	5	26	5	26	y	0.00	0	19	0	19	n	0.00	0	26	0	26	n	0.00	0	18	0	18	n	0.00	0	25	0	25	n	0.00	0	24	0	24	n	0.00	0	42	0	42	n	0.00	0	20	0	20	n	0.00	0	11	0	11	n	0.00	0	18	0	18	n	0.00	0	54	0	54	n	0.00	0	45	0	45	n	ENSMUSG00000038155.12	Gstp2	chr19	protein_coding	glutathione S-transferase, pi 2
novel_NIR_9907	chr19	4086791	4091398	-	4091085	4091398	3pMXE	ENSMUST00000235657.2	novel	0.37	15	26	15	26	y	0.33	7	14	7	14	y	0.15	9	53	9	53	y	0.32	8	17	8	17	y	0.20	9	37	9	37	y	0.17	10	49	10	49	y	0.24	19	61	19	61	y	0.11	6	51	6	51	n	0.33	13	26	13	26	y	0.32	12	25	12	25	y	0.20	8	33	8	33	y	0.44	24	30	24	30	y	ENSMUSG00000038155.12	Gstp2	chr19	protein_coding	glutathione S-transferase, pi 2
novel_NIR_9908	chr19	40883514	40885528	+	40883230	40885528	A5SS	ENSMUST00000235235.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000049164.8	Zfp518a	chr19	protein_coding	zinc finger protein 518A
novel_NIR_9909	chr19	40883514	40885528	+	40883234	40885528	A5SS	ENSMUST00000050092.7	novel	0.00	0	7	0	7	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000049164.8	Zfp518a	chr19	protein_coding	zinc finger protein 518A
novel_NIR_9910	chr19	41034233	41034627	+	41031425	41034627	A5SS	ENSMUST00000051806.12	novel	1.00	6	0	6	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.92	11	1	11	1	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	9	0	9	0	y	0.80	4	1	4	1	y	1.00	6	0	6	0	y	ENSMUSG00000025014.14	Dntt	chr19	protein_coding	deoxynucleotidyltransferase, terminal
novel_NIR_9911	chr19	41041060	41041434	+	41036076	41041434	A5SS	ENSMUST00000051806.12	novel	0.00	0	13	0	13	n	0.12	1	7	1	7	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.14	2	12	2	12	n	0.50	2	2	2	2	y	0.00	0	10	0	10	n	ENSMUSG00000025014.14	Dntt	chr19	protein_coding	deoxynucleotidyltransferase, terminal
novel_NIR_9912	chr19	4108841	4109109	-	4108841	4109183	A5SS	ENSMUST00000236991.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000058216.14	Gstp3	chr19	protein_coding	glutathione S-transferase pi 3
novel_NIR_9913	chr19	4108841	4109109	-	4108841	4109424	A5SS	ENSMUST00000238086.2	novel	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.17	4	20	4	20	y	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	ENSMUSG00000058216.14	Gstp3	chr19	protein_coding	glutathione S-transferase pi 3
novel_NIR_9914	chr19	4108841	4109332	-	4108841	4109183	A5SS&ES	ENSMUST00000236991.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	9	0	9	0	y	1.00	1	0	1	0	n	1.00	7	0	7	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000058216.14	Gstp3	chr19	protein_coding	glutathione S-transferase pi 3
novel_NIR_9915	chr19	4108841	4109332	-	4108841	4109424	A5SS	ENSMUST00000238086.2	novel	0.00	0	7	0	7	n	0.17	2	10	2	10	y	0.31	9	20	9	20	y	0.08	1	11	1	11	n	0.54	7	6	7	6	y	0.27	3	8	3	8	y	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	2	0	2	n	0.20	2	8	2	8	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000058216.14	Gstp3	chr19	protein_coding	glutathione S-transferase pi 3
novel_NIR_9916	chr19	4108841	4109337	-	4108841	4109183	A5SS&ES	ENSMUST00000236991.2	novel	1.00	16	0	16	0	y	1.00	9	0	9	0	y	1.00	12	0	12	0	y	1.00	6	0	6	0	y	1.00	14	0	14	0	y	1.00	15	0	15	0	y	1.00	8	0	8	0	y	1.00	12	0	12	0	y	1.00	7	0	7	0	y	1.00	4	0	4	0	y	1.00	10	0	10	0	y	1.00	12	0	12	0	y	ENSMUSG00000058216.14	Gstp3	chr19	protein_coding	glutathione S-transferase pi 3
novel_NIR_9917	chr19	4108841	4109337	-	4108841	4109259	A5SS&ES	ENSMUST00000189808.7	novel	0.26	16	46	16	46	y	0.19	9	39	9	39	y	0.11	12	96	12	96	n	0.14	6	37	6	37	n	0.16	14	75	14	75	y	0.28	15	38	15	38	y	0.09	8	86	8	86	n	0.25	12	36	12	36	y	0.32	7	15	7	15	y	0.05	4	70	4	70	n	0.23	10	33	10	33	y	0.25	12	36	12	36	y	ENSMUSG00000058216.14	Gstp3	chr19	protein_coding	glutathione S-transferase pi 3
novel_NIR_9918	chr19	4108841	4109337	-	4108841	4109424	A5SS	ENSMUST00000238086.2	novel	0.70	16	7	16	7	y	0.47	9	10	9	10	y	0.38	12	20	12	20	y	0.35	6	11	6	11	y	0.70	14	6	14	6	y	0.65	15	8	15	8	y	0.44	8	10	8	10	y	0.46	12	14	12	14	y	0.78	7	2	7	2	y	0.33	4	8	4	8	y	0.83	10	2	10	2	y	0.75	12	4	12	4	y	ENSMUSG00000058216.14	Gstp3	chr19	protein_coding	glutathione S-transferase pi 3
novel_NIR_9919	chr19	4108841	4109406	-	4108841	4109183	A5SS&ES	ENSMUST00000236991.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000058216.14	Gstp3	chr19	protein_coding	glutathione S-transferase pi 3
novel_NIR_9920	chr19	4108841	4109406	-	4108841	4109424	A5SS	ENSMUST00000238086.2	novel	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	20	0	20	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	2	0	2	n	0.20	2	8	2	8	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000058216.14	Gstp3	chr19	protein_coding	glutathione S-transferase pi 3
novel_NIR_9921	chr19	4108895	4109259	-	4108841	4109259	A3SS	ENSMUST00000189808.7	novel	0.04	2	46	2	46	n	0.00	0	39	0	39	n	0.01	1	96	1	96	n	0.00	0	37	0	37	n	0.01	1	75	1	75	n	0.00	0	38	0	38	n	0.04	4	86	4	86	n	0.00	0	36	0	36	n	0.00	0	15	0	15	n	0.04	3	70	3	70	n	0.00	0	33	0	33	n	0.16	7	36	7	36	y	ENSMUSG00000058216.14	Gstp3	chr19	protein_coding	glutathione S-transferase pi 3
novel_NIR_9922	chr19	4176199	4176535	+	4176199	4177576	A3SS	ENSMUST00000135257.11	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000024845.20	Tmem134	chr19	protein_coding	transmembrane protein 134
novel_NIR_9923	chr19	4176199	4176708	+	4176199	4177576	A3SS	ENSMUST00000135257.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000024845.20	Tmem134	chr19	protein_coding	transmembrane protein 134
novel_NIR_9924	chr19	4177120	4177229	+	4177120	4177576	A3SS	ENSMUST00000139987.10	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000024845.20	Tmem134	chr19	protein_coding	transmembrane protein 134
novel_NIR_9925	chr19	4177835	4178108	+	4177835	4180856	A3SS	ENSMUST00000138593.10	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024845.20	Tmem134	chr19	protein_coding	transmembrane protein 134
novel_NIR_9926	chr19	4177835	4178303	+	4177835	4180856	A3SS	ENSMUST00000138593.10	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	ENSMUSG00000024845.20	Tmem134	chr19	protein_coding	transmembrane protein 134
novel_NIR_9927	chr19	4177835	4181059	+	4177835	4180856	A3SS	ENSMUST00000138593.10	novel	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	5	0	5	0	y	1.00	4	0	4	0	y	ENSMUSG00000024845.20	Tmem134	chr19	protein_coding	transmembrane protein 134
novel_NIR_9928	chr19	41900625	41904085	+	41900560	41904085	A5SS	ENSMUST00000237510.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	15	0	15	0	y	-	-	-	-	-	-	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	8	0	8	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000011752.8	Pgam1	chr19	protein_coding	phosphoglycerate mutase 1
novel_NIR_9929	chr19	41913234	41914971	-	41913234	41913628	A5SS&ES	ENSMUST00000112123.4	novel	0.06	3	51	3	51	n	0.05	3	53	3	53	n	0.03	2	61	2	61	n	0.00	0	27	0	27	n	0.09	6	59	6	59	n	0.18	6	28	6	28	n	0.00	0	43	0	43	n	0.15	5	28	5	28	y	0.04	2	50	2	50	n	0.04	2	55	2	55	n	0.00	0	44	0	44	n	0.03	1	39	1	39	n	ENSMUSG00000034321.15	Exosc1	chr19	protein_coding	exosome component 1
novel_NIR_9930	chr19	41913234	41914971	-	41913234;41913678	41913628;41914971	ES	ENSMUST00000075280.12	novel	0.06	3	47.5	3	51;44	n	0.06	3	48.5	3	53;44	n	0.04	2	55.0	2	61;49	n	0.00	0	25.0	0	27;23	n	0.09	6	57.5	6	59;56	n	0.18	6	27.5	6	28;27	y	0.00	0	50.5	0	43;58	n	0.16	5	25.5	5	28;23	y	0.04	2	44.5	2	50;39	n	0.04	2	47.0	2	55;39	n	0.00	0	40.5	0	44;37	n	0.03	1	36.0	1	39;33	n	ENSMUSG00000034321.15	Exosc1	chr19	protein_coding	exosome component 1
novel_NIR_9931	chr19	41915004	41919795	-	41913678	41919795	A3SS	ENSMUST00000112123.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000034321.15	Exosc1	chr19	protein_coding	exosome component 1
novel_NIR_9932	chr19	41922104	41923247	+	41922104	41923279	A3SS	ENSMUST00000224258.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00	0	6	0	6	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.67	2	1	2	1	y	-	-	-	-	-	-	ENSMUSG00000025157.9	Zdhhc16	chr19	protein_coding	zinc finger, DHHC domain containing 16
novel_NIR_9933	chr19	41922104	41923247	+	41922104	41926042	A3SS	ENSMUST00000224896.2	novel	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000025157.9	Zdhhc16	chr19	protein_coding	zinc finger, DHHC domain containing 16
novel_NIR_9934	chr19	41925833	41926042	+	41922104	41926042	A5SS	ENSMUST00000224896.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.75	3	1	3	1	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025157.9	Zdhhc16	chr19	protein_coding	zinc finger, DHHC domain containing 16
novel_NIR_9935	chr19	41926891	41927162	+	41926891	41927159	A3SS	ENSMUST00000225968.2	novel	0.14	1	6	1	6	n	0.30	3	7	3	7	y	0.33	2	4	2	4	y	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.14	1	6	1	6	n	ENSMUSG00000025157.9	Zdhhc16	chr19	protein_coding	zinc finger, DHHC domain containing 16
novel_NIR_9936	chr19	41926891	41927162	+	41926891	41928127	A3SS	ENSMUST00000224562.2	novel	0.50	1	1	1	1	n	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	1	2	1	2	n	ENSMUSG00000025157.9	Zdhhc16	chr19	protein_coding	zinc finger, DHHC domain containing 16
novel_NIR_9937	chr19	41930663	41930753	+	41930663	41932021	A3SS	ENSMUST00000223802.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	n	-	-	-	-	-	-	0.40	4	6	4	6	n	0.50	3	3	3	3	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.75	3	1	3	1	y	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000025157.9	Zdhhc16	chr19	protein_coding	zinc finger, DHHC domain containing 16
novel_NIR_9938	chr19	41930880	41932021	+	41930663	41932021	A5SS	ENSMUST00000223802.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.14	1	6	1	6	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.60	3	2	3	2	n	0.00	0	1	0	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000025157.9	Zdhhc16	chr19	protein_coding	zinc finger, DHHC domain containing 16
novel_NIR_9939	chr19	41938031	41938208	-	41938020	41938208	A3SS	ENSMUST00000171561.8	novel	0.06	2	31	2	31	n	0.09	3	30	3	30	n	0.19	5	21	5	21	y	0.15	6	35	6	35	y	0.20	13	53	13	53	y	0.12	3	22	3	22	n	0.14	7	44	7	44	n	0.08	1	12	1	12	n	0.09	3	29	3	29	n	0.03	1	36	1	36	n	0.04	1	24	1	24	n	0.14	6	38	6	38	n	ENSMUSG00000025159.9	Mms19	chr19	protein_coding	MMS19 cytosolic iron-sulfur assembly component
novel_NIR_9940	chr19	4199984	4200265	+	4199984	4200439	A3SS	ENSMUST00000236397.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.33	1	2	1	2	n	ENSMUSG00000024835.16	Coro1b	chr19	protein_coding	coronin, actin binding protein 1B
novel_NIR_9941	chr19	42034549	42047545	+	42034549	42040411	3pMXE	ENSMUST00000168414.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	0.78	7	2	7	2	y	0.80	4	1	4	1	y	1.00	1	0	1	0	n	0.78	7	2	7	2	y	1.00	3	0	3	0	y	0.50	1	1	1	1	n	0.33	1	2	1	2	n	0.86	6	1	6	1	y	0.50	2	2	2	2	y	ENSMUSG00000025176.15	Hoga1	chr19	protein_coding	4-hydroxy-2-oxoglutarate aldolase 1
novel_NIR_9942	chr19	42034549	42047545	+	42034549	42051631	A3SS	ENSMUST00000172244.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	7	0	7	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	7	0	7	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	6	0	6	0	y	0.67	2	1	2	1	y	ENSMUSG00000025176.15	Hoga1	chr19	protein_coding	4-hydroxy-2-oxoglutarate aldolase 1
novel_NIR_9943	chr19	42034549	42047548	+	42034549	42040411	3pMXE	ENSMUST00000168414.2	novel	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	0.50	2	2	2	2	y	0.83	5	1	5	1	y	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.75	3	1	3	1	y	0.60	3	2	3	2	y	0.75	3	1	3	1	y	0.60	3	2	3	2	y	ENSMUSG00000025176.15	Hoga1	chr19	protein_coding	4-hydroxy-2-oxoglutarate aldolase 1
novel_NIR_9944	chr19	42034549	42047548	+	42034549	42051631	A3SS	ENSMUST00000172244.8	novel	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	0.75	3	1	3	1	y	ENSMUSG00000025176.15	Hoga1	chr19	protein_coding	4-hydroxy-2-oxoglutarate aldolase 1
novel_NIR_9945	chr19	42034549	42101482	+	42034549	42040411	3pMXE	ENSMUST00000168414.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	ENSMUSG00000025176.15	Hoga1	chr19	protein_coding	4-hydroxy-2-oxoglutarate aldolase 1
novel_NIR_9946	chr19	4208127	4208287	-	4208127	4208824	A5SS	ENSMUST00000137431.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024830.18	Rps6kb2	chr19	protein_coding	ribosomal protein S6 kinase, polypeptide 2
novel_NIR_9947	chr19	4208365	4208609	-	4208362	4208609	A3SS	ENSMUST00000154307.8	novel	0.25	1	3	1	3	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.60	3	2	3	2	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.67	4	2	4	2	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.20	2	8	2	8	y	0.40	2	3	2	3	y	0.00	0	1	0	1	n	ENSMUSG00000024830.18	Rps6kb2	chr19	protein_coding	ribosomal protein S6 kinase, polypeptide 2
novel_NIR_9948	chr19	4208716	4208850	-	4208716	4208802	A5SS	ENSMUST00000127605.8	novel	0.00	0	1	0	1	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000024830.18	Rps6kb2	chr19	protein_coding	ribosomal protein S6 kinase, polypeptide 2
novel_NIR_9949	chr19	4209326	4211063	-	4209326	4211067	A5SS	ENSMUST00000237691.2	novel	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.00	0	7	0	7	n	0.00	0	9	0	9	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.14	1	6	1	6	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000024830.18	Rps6kb2	chr19	protein_coding	ribosomal protein S6 kinase, polypeptide 2
novel_NIR_9950	chr19	4209459	4211063	-	4209459	4209565	A5SS&ES	ENSMUST00000130469.8	novel	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000024830.18	Rps6kb2	chr19	protein_coding	ribosomal protein S6 kinase, polypeptide 2
novel_NIR_9951	chr19	42108455	42110034	+	42108423	42110034	A5SS	ENSMUST00000235932.2	novel	0.25	14	42	14	42	y	0.11	5	42	5	42	n	0.00	0	18	0	18	n	0.23	9	30	9	30	y	0.08	3	35	3	35	n	0.08	1	11	1	11	n	0.16	9	46	9	46	y	0.10	2	18	2	18	n	0.12	4	29	4	29	n	0.12	7	49	7	49	n	0.07	4	51	4	51	n	0.05	3	57	3	57	n	ENSMUSG00000025178.10	Pi4k2a	chr19	protein_coding	phosphatidylinositol 4-kinase type 2 alpha
novel_NIR_9952	chr19	4212717	4212821	-	4212717	4213167	A5SS	ENSMUST00000155303.3	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024830.18	Rps6kb2	chr19	protein_coding	ribosomal protein S6 kinase, polypeptide 2
novel_NIR_9953	chr19	42171210	42171843	+	42171210	42171867	A3SS	ENSMUST00000169536.8	novel	0.19	5	22	5	22	y	0.00	0	13	0	13	n	0.00	0	25	0	25	n	0.00	0	29	0	29	n	0.00	0	28	0	28	n	0.00	0	13	0	13	n	0.00	0	39	0	39	n	0.00	0	16	0	16	n	0.00	0	16	0	16	n	0.03	1	33	1	33	n	0.00	0	24	0	24	n	0.00	0	32	0	32	n	ENSMUSG00000018820.14	Zfyve27	chr19	protein_coding	zinc finger, FYVE domain containing 27
novel_NIR_9954	chr19	4247249	4247342	-	4247249	4247338	A5SS	ENSMUST00000025740.8	novel	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.11	1	8	1	8	n	0.11	2	16	2	16	n	0.00	0	4	0	4	n	0.42	5	7	5	7	y	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	ENSMUSG00000024824.8	Rad9a	chr19	protein_coding	RAD9 checkpoint clamp component A
novel_NIR_9955	chr19	4247581	4247670	-	4247585	4247670	A3SS	ENSMUST00000025740.8	novel	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.15	2	11	2	11	y	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.33	2	4	2	4	y	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	ENSMUSG00000024824.8	Rad9a	chr19	protein_coding	RAD9 checkpoint clamp component A
novel_NIR_9956	chr19	42507611	42550991	+	42507296	42550991	A5SS	ENSMUST00000026188.10	novel	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	17	0	17	n	0.38	3	5	3	5	y	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.06	1	15	1	15	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.12	1	7	1	7	n	0.00	0	4	0	4	n	ENSMUSG00000025184.11	R3hcc1l	chr19	protein_coding	R3H domain and coiled-coil containing 1 like
novel_NIR_9957	chr19	4322889	4323039	-	4322889	4323049	A5SS	ENSMUST00000056888.13	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	ENSMUSG00000005986.17	Ankrd13d	chr19	protein_coding	ankyrin repeat domain 13 family, member D
novel_NIR_9958	chr19	43452937	43453560	+	43430456	43453560	A5SS	ENSMUST00000223787.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025189.10	Cnnm1	chr19	protein_coding	cyclin M1
novel_NIR_9959	chr19	43460863	43465656	+	43460387	43465656	A5SS	ENSMUST00000225254.2	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025189.10	Cnnm1	chr19	protein_coding	cyclin M1
novel_NIR_9960	chr19	43460863	43465656	+	43460863	43464619	A3SS&ES	ENSMUST00000223787.2	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025189.10	Cnnm1	chr19	protein_coding	cyclin M1
novel_NIR_9961	chr19	43460863	43465656	+	43460863	43473284	A3SS	ENSMUST00000165311.3	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025189.10	Cnnm1	chr19	protein_coding	cyclin M1
novel_NIR_9962	chr19	43493334	43495361	-	43493126	43495361	A3SS	ENSMUST00000133325.8	novel	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.78	32	9	32	9	y	ENSMUSG00000025190.14	Got1	chr19	protein_coding	glutamic-oxaloacetic transaminase 1, soluble
novel_NIR_9963	chr19	43495302	43495361	-	43493126	43495361	A3SS	ENSMUST00000133325.8	novel	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.18	2	9	2	9	y	ENSMUSG00000025190.14	Got1	chr19	protein_coding	glutamic-oxaloacetic transaminase 1, soluble
novel_NIR_9964	chr19	43755484	43755640	+	43753426	43755640	A5SS	ENSMUST00000026199.14	novel	0.06	2	34	2	34	n	0.00	0	23	0	23	n	0.11	3	25	3	25	n	0.03	1	31	1	31	n	0.14	5	32	5	32	n	0.25	2	6	2	6	y	0.02	1	51	1	51	n	0.11	3	24	3	24	n	0.05	2	37	2	37	n	0.06	3	47	3	47	n	0.11	6	51	6	51	n	0.05	2	36	2	36	n	ENSMUSG00000025193.15	Cutc	chr19	protein_coding	cutC copper transporter
novel_NIR_9965	chr19	4389089	4392875	-	4391482	4392875	3pMXE	ENSMUST00000116571.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000054611.18	Kdm2a	chr19	protein_coding	lysine (K)-specific demethylase 2A
novel_NIR_9966	chr19	44067434	44070385	-	44067705	44070385	A3SS	ENSMUST00000134495.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025199.17	Chuk	chr19	protein_coding	conserved helix-loop-helix ubiquitous kinase
novel_NIR_9967	chr19	44092191	44095283	-	44092191	44095656	A5SS	ENSMUST00000146861.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025199.17	Chuk	chr19	protein_coding	conserved helix-loop-helix ubiquitous kinase
novel_NIR_9968	chr19	4412942	4438969	-	4438580	4438969	3pMXE	ENSMUST00000176483.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000054611.18	Kdm2a	chr19	protein_coding	lysine (K)-specific demethylase 2A
novel_NIR_9969	chr19	4412942	4447962	-	4412942;4444920	4444820;4447962	ES	ENSMUST00000047898.14	novel	0.00	0	11.0	0	22;0	n	0.00	0	9.0	0	16;2	n	0.00	0	20.5	0	38;3	n	0.05	1	19.0	1	32;6	n	0.00	0	24.0	0	44;4	n	0.00	0	9.5	0	17;2	n	0.16	3	15.5	3	26;5	y	0.00	0	16.5	0	27;6	n	0.00	0	8.5	0	17;0	n	0.00	0	14.5	0	22;7	n	0.00	0	7.5	0	11;4	n	0.00	0	13.0	0	24;2	n	ENSMUSG00000054611.18	Kdm2a	chr19	protein_coding	lysine (K)-specific demethylase 2A
novel_NIR_9970	chr19	44396017	44397087	-	44396017	44396259	5pMXE	ENSMUST00000235741.2	novel	0.00	0	5	0	5	n	-	-	-	-	-	-	0.78	7	2	7	2	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.20	1	4	1	4	n	-	-	-	-	-	-	0.12	1	7	1	7	n	0.25	1	3	1	3	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	ENSMUSG00000037071.4	Scd1	chr19	protein_coding	stearoyl-Coenzyme A desaturase 1
novel_NIR_9971	chr19	4446428	4447962	-	4444920	4447962	A3SS	ENSMUST00000047898.14	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.17	1	5	1	5	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000054611.18	Kdm2a	chr19	protein_coding	lysine (K)-specific demethylase 2A
novel_NIR_9972	chr19	44513691	44513915	-	44513686	44513915	A3SS	ENSMUST00000063632.14	novel	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.08	1	11	1	11	n	0.11	1	8	1	8	n	0.30	3	7	3	7	y	0.20	2	8	2	8	y	0.27	3	8	3	8	y	0.29	2	5	2	5	y	0.00	0	12	0	12	n	0.00	0	23	0	23	n	0.20	3	12	3	12	y	0.07	1	14	1	14	n	ENSMUSG00000051984.14	Sec31b	chr19	protein_coding	Sec31 homolog B (S. cerevisiae)
novel_NIR_9973	chr19	44514093	44515044	-	44514093;44514754	44514655;44515044	ES	ENSMUST00000063632.14	novel	0.33	1	2.0	1	2;2	n	0.44	4	5.0	4	7;3	y	0.25	2	6.0	2	4;8	y	0.22	1	3.5	1	4;3	n	0.22	1	3.5	1	2;5	n	0.00	0	2.0	0	2;2	n	0.27	3	8.0	3	6;10	y	0.57	2	1.5	2	2;1	y	0.56	7	5.5	7	5;6	y	0.29	4	10.0	4	12;8	y	0.00	0	4.0	0	5;3	n	0.35	4	7.5	4	5;10	y	ENSMUSG00000051984.14	Sec31b	chr19	protein_coding	Sec31 homolog B (S. cerevisiae)
novel_NIR_9974	chr19	44520209	44520774	-	44520209	44520733	A5SS	ENSMUST00000063632.14	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	3	6	3	6	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	ENSMUSG00000051984.14	Sec31b	chr19	protein_coding	Sec31 homolog B (S. cerevisiae)
novel_NIR_9975	chr19	44520894	44522680	-	44520894;44521132	44521033;44522680	ES	ENSMUST00000063632.14	novel	0.21	2	7.5	2	7;8	y	0.00	0	5.0	0	7;3	n	0.00	0	3.5	0	5;2	n	0.00	0	7.0	0	8;6	n	0.00	0	8.0	0	5;11	n	0.00	0	3.5	0	7;0	n	0.00	0	10.5	0	11;10	n	0.00	0	7.5	0	11;4	n	0.00	0	7.0	0	6;8	n	0.00	0	11.5	0	13;10	n	0.33	2	4.0	2	4;4	y	0.00	0	4.5	0	6;3	n	ENSMUSG00000051984.14	Sec31b	chr19	protein_coding	Sec31 homolog B (S. cerevisiae)
novel_NIR_9976	chr19	44524692	44528534	-	44524692	44532140	A5SS	ENSMUST00000111985.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	ENSMUSG00000051984.14	Sec31b	chr19	protein_coding	Sec31 homolog B (S. cerevisiae)
novel_NIR_9977	chr19	44528608	44531705	-	44524692	44531705	A3SS	ENSMUST00000063632.14	novel	0.30	3	7	3	7	y	0.25	1	3	1	3	n	0.50	2	2	2	2	n	0.40	4	6	4	6	n	0.56	5	4	5	4	y	1.00	4	0	4	0	y	0.33	1	2	1	2	n	0.60	3	2	3	2	y	0.20	1	4	1	4	n	0.62	8	5	8	5	n	0.75	3	1	3	1	y	0.25	1	3	1	3	n	ENSMUSG00000051984.14	Sec31b	chr19	protein_coding	Sec31 homolog B (S. cerevisiae)
novel_NIR_9978	chr19	44543496	44543766	-	44543496	44543666	A5SS	ENSMUST00000167027.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.50	1	1	1	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	ENSMUSG00000025204.11	Ndufb8	chr19	protein_coding	NADH:ubiquinone oxidoreductase subunit B8
novel_NIR_9979	chr19	4476284	4476651	-	4476284	4476505	5pMXE	ENSMUST00000151420.2	novel	0.50	1	1	1	1	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	1	0	1	n	0.09	1	10	1	10	n	0.50	1	1	1	1	n	0.22	2	7	2	7	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.22	2	7	2	7	y	0.00	0	5	0	5	n	ENSMUSG00000041845.12	Rhod	chr19	protein_coding	ras homolog family member D
novel_NIR_9980	chr19	4476284	4476651	-	4476284	4476608	A5SS	ENSMUST00000235680.2	novel	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.20	1	4	1	4	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000041845.12	Rhod	chr19	protein_coding	ras homolog family member D
novel_NIR_9981	chr19	4491912	4493770	+	4489417	4493770	A5SS	ENSMUST00000154407.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000087132.9	A930001C03Rik	chr19	lncRNA	RIKEN cDNA A930001C03 gene
novel_NIR_9982	chr19	4491912	4493770	+	4489698	4493770	A5SS	ENSMUST00000133871.8	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.50	2	2	2	2	y	0.38	3	5	3	5	y	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	ENSMUSG00000087132.9	A930001C03Rik	chr19	lncRNA	RIKEN cDNA A930001C03 gene
novel_NIR_9983	chr19	44923539	44926804	+	44924105	44926804	A5SS	ENSMUST00000096053.5	novel	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.17	2	10	2	10	y	0.00	0	13	0	13	n	0.00	0	15	0	15	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	22	0	22	n	ENSMUSG00000036097.9	Slf2	chr19	protein_coding	SMC5-SMC6 complex localization factor 2
novel_NIR_9984	chr19	4493816	4497325	+	4493816	4494031	A3SS&ES	ENSMUST00000132579.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.33	1	2	1	2	n	0.40	2	3	2	3	y	-	-	-	-	-	-	1.00	3	0	3	0	y	0.60	3	2	3	2	y	0.75	3	1	3	1	y	0.86	6	1	6	1	y	ENSMUSG00000087132.9	A930001C03Rik	chr19	lncRNA	RIKEN cDNA A930001C03 gene
novel_NIR_9985	chr19	4493816	4497325	+	4493816	4497553	A3SS	ENSMUST00000235289.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.33	1	2	1	2	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	0.75	3	1	3	1	y	1.00	3	0	3	0	y	1.00	6	0	6	0	y	ENSMUSG00000087132.9	A930001C03Rik	chr19	lncRNA	RIKEN cDNA A930001C03 gene
novel_NIR_9986	chr19	4493816	4497325	+	4493816;4494066	4494031;4497325	ES	ENSMUST00000154407.8	novel	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	0.67	2	1.0	2	1;1	y	0.00	0	0.5	0	1;0	n	0.50	1	1.0	1	2;0	n	0.50	1	1.0	1	2;0	n	0.57	2	1.5	2	3;0	y	-	-	-	-	-	-	1.00	3	0.0	3	0;0	y	0.67	3	1.5	3	2;1	y	0.86	3	0.5	3	1;0	y	0.92	6	0.5	6	1;0	y	ENSMUSG00000087132.9	A930001C03Rik	chr19	lncRNA	RIKEN cDNA A930001C03 gene
novel_NIR_9987	chr19	44949314	44955942	+	44949314;44955508	44955406;44955942	ES	ENSMUST00000096053.5	novel	0.00	0	17.0	0	16;18	n	0.00	0	10.0	0	11;9	n	0.08	1	11.5	1	10;13	n	0.00	0	13.0	0	13;13	n	0.05	1	18.0	1	12;24	n	0.00	0	10.0	0	6;14	n	0.00	0	15.5	0	10;21	n	0.00	0	16.0	0	16;16	n	0.00	0	12.0	0	11;13	n	0.00	0	23.5	0	25;22	n	0.00	0	11.0	0	8;14	n	0.15	3	17.5	3	16;19	y	ENSMUSG00000036097.9	Slf2	chr19	protein_coding	SMC5-SMC6 complex localization factor 2
novel_NIR_9988	chr19	44956118	44956871	+	44956118	44957476	A3SS	ENSMUST00000096053.5	novel	0.00	0	12	0	12	n	0.33	2	4	2	4	y	0.04	1	25	1	25	n	0.07	1	14	1	14	n	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.29	4	10	4	10	y	0.17	2	10	2	10	y	0.00	0	17	0	17	n	0.00	0	18	0	18	n	ENSMUSG00000036097.9	Slf2	chr19	protein_coding	SMC5-SMC6 complex localization factor 2
novel_NIR_9989	chr19	44964154	44968995	+	44964154;44967668	44967600;44968995	ES	ENSMUST00000096053.5	novel	0.00	0	14.0	0	17;11	n	0.00	0	15.5	0	13;18	n	0.04	1	22.5	1	23;22	n	0.00	0	16.5	0	14;19	n	0.00	0	23.0	0	22;24	n	0.20	3	12.0	3	15;9	y	0.00	0	16.0	0	14;18	n	0.00	0	18.5	0	22;15	n	0.00	0	12.5	0	17;8	n	0.00	0	18.5	0	23;14	n	0.00	0	17.0	0	16;18	n	0.11	3	23.5	3	33;14	n	ENSMUSG00000036097.9	Slf2	chr19	protein_coding	SMC5-SMC6 complex localization factor 2
novel_NIR_9990	chr19	44967668	44969001	+	44967668	44968995	A3SS	ENSMUST00000096053.5	novel	0.00	0	11	0	11	n	0.00	0	18	0	18	n	0.00	0	22	0	22	n	0.10	2	19	2	19	n	0.00	0	24	0	24	n	0.00	0	9	0	9	n	0.00	0	18	0	18	n	0.00	0	15	0	15	n	0.20	2	8	2	8	y	0.00	0	14	0	14	n	0.05	1	18	1	18	n	0.07	1	14	1	14	n	ENSMUSG00000036097.9	Slf2	chr19	protein_coding	SMC5-SMC6 complex localization factor 2
novel_NIR_9991	chr19	44977365	44980577	+	44978118	44980577	5pMXE	ENSMUST00000130549.8	novel	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.22	2	7	2	7	y	ENSMUSG00000025207.17	Sema4g	chr19	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
novel_NIR_9992	chr19	44977796;44979403	44979049;44979612	+	44977796	44979612	cassetteExon	ENSMUST00000236662.2	novel	0.19	5.0	22	0;10	22	n	0.10	3.5	33	0;7	33	n	0.14	1.0	6	0;2	6	n	0.14	7.0	44	1;13	44	n	0.09	6.0	63	2;10	63	n	0.00	0.0	16	0;0	16	n	0.06	2.5	37	0;5	37	n	0.07	1.5	20	1;2	20	n	0.23	9.5	31	2;17	31	y	0.09	5.5	56	0;11	56	n	0.21	7.5	29	0;15	29	n	0.26	16.0	46	1;31	46	n	ENSMUSG00000025207.17	Sema4g	chr19	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
novel_NIR_9993	chr19	44977796;44979403	44979309;44979612	+	44977796	44979612	cassetteExon	ENSMUST00000236662.2	novel	0.19	5.0	22	0;10	22	n	0.13	5.0	33	3;7	33	n	0.14	1.0	6	0;2	6	n	0.15	7.5	44	2;13	44	y	0.09	6.0	63	2;10	63	n	0.00	0.0	16	0;0	16	n	0.10	4.0	37	3;5	37	n	0.07	1.5	20	1;2	20	n	0.24	10.0	31	3;17	31	y	0.15	9.5	56	8;11	56	y	0.27	10.5	29	6;15	29	y	0.26	16.5	46	2;31	46	y	ENSMUSG00000025207.17	Sema4g	chr19	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
novel_NIR_9994	chr19	44978118	44979309	+	44978118	44980577	A3SS	ENSMUST00000130549.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.60	3	2	3	2	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	ENSMUSG00000025207.17	Sema4g	chr19	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
novel_NIR_9995	chr19	44979097	44980577	+	44978118	44980577	A5SS	ENSMUST00000130549.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.67	4	2	4	2	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.22	2	7	2	7	y	ENSMUSG00000025207.17	Sema4g	chr19	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
novel_NIR_9996	chr19	44979403	44979612	+	44977796	44979612	A5SS	ENSMUST00000236662.2	novel	0.31	10	22	10	22	y	0.17	7	33	7	33	n	0.25	2	6	2	6	y	0.23	13	44	13	44	n	0.14	10	63	10	63	n	0.00	0	16	0	16	n	0.12	5	37	5	37	n	0.09	2	20	2	20	n	0.35	17	31	17	31	n	0.16	11	56	11	56	n	0.34	15	29	15	29	n	0.40	31	46	31	46	n	ENSMUSG00000025207.17	Sema4g	chr19	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
novel_NIR_9997	chr19	44979403	44980577	+	44978118	44980577	A5SS	ENSMUST00000130549.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	ENSMUSG00000025207.17	Sema4g	chr19	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
novel_NIR_9998	chr19	44995117	44997719	+	44994626	44997719	A5SS	ENSMUST00000236685.2	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.50	1	1	1	1	n	0.29	2	5	2	5	y	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	12	0	12	n	0.60	6	4	6	4	y	0.00	0	4	0	4	n	ENSMUSG00000025209.6	Twnk	chr19	protein_coding	twinkle mtDNA helicase
novel_NIR_9999	chr19	44995117	44997719	+	44996814	44997719	A5SS	ENSMUST00000026227.3	novel	0.00	0	24	0	24	n	0.00	0	20	0	20	n	0.00	0	40	0	40	n	0.00	0	31	0	31	n	0.04	2	44	2	44	n	0.05	1	20	1	20	n	0.04	2	44	2	44	n	0.00	0	27	0	27	n	0.00	0	31	0	31	n	0.00	0	43	0	43	n	0.24	6	19	6	19	y	0.00	0	46	0	46	n	ENSMUSG00000025209.6	Twnk	chr19	protein_coding	twinkle mtDNA helicase
novel_NIR_10000	chr19	45006669	45010045	+	45006669	45009826	A3SS	ENSMUST00000237043.2	novel	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	ENSMUSG00000035342.15	Lzts2	chr19	protein_coding	leucine zipper, putative tumor suppressor 2
novel_NIR_10001	chr19	45067147	45067311	+	45067147	45067306	A3SS	ENSMUST00000111948.8	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	ENSMUSG00000025213.12	Kazald1	chr19	protein_coding	Kazal-type serine peptidase inhibitor domain 1
novel_NIR_10002	chr19	45395025	45459454	+	45395025	45411572	3pMXE	ENSMUST00000224318.2	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.29	2	5	2	5	y	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.14	1	6	1	6	n	0.00	0	4	0	4	n	ENSMUSG00000025217.16	Btrc	chr19	protein_coding	beta-transducin repeat containing protein
novel_NIR_10003	chr19	45411679	45459454	+	45411679	45425776	3pMXE	ENSMUST00000224102.2	novel	1.00	3	0	3	0	y	1.00	5	0	5	0	y	1.00	4	0	4	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	ENSMUSG00000025217.16	Btrc	chr19	protein_coding	beta-transducin repeat containing protein
novel_NIR_10004	chr19	45411679	45459454	+	45411679;45445049	45444972;45459454	ES	ENSMUST00000065601.13	novel	0.18	3	14.0	3	14;14	y	0.45	5	6.0	5	4;8	y	0.32	4	8.5	4	6;11	y	0.19	4	17.0	4	13;21	y	0.05	1	20.0	1	11;29	n	0.56	7	5.5	7	6;5	y	0.00	0	11.5	0	8;15	n	0.07	1	13.5	1	15;12	n	0.00	0	9.5	0	4;15	n	0.00	0	22.5	0	19;26	n	0.09	1	10.5	1	11;10	n	0.18	4	18.5	4	14;23	y	ENSMUSG00000025217.16	Btrc	chr19	protein_coding	beta-transducin repeat containing protein
novel_NIR_10005	chr19	45411679	45459454	+	45445049	45459454	A5SS&ES	ENSMUST00000111936.4	novel	0.18	3	14	3	14	y	0.38	5	8	5	8	y	0.27	4	11	4	11	y	0.16	4	21	4	21	y	0.03	1	29	1	29	n	0.58	7	5	7	5	y	0.00	0	15	0	15	n	0.08	1	12	1	12	n	0.00	0	15	0	15	n	0.00	0	26	0	26	n	0.09	1	10	1	10	n	0.15	4	23	4	23	y	ENSMUSG00000025217.16	Btrc	chr19	protein_coding	beta-transducin repeat containing protein
novel_NIR_10006	chr19	45445049	45491371	+	45352325	45491371	A5SS	ENSMUST00000223764.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	0.50	1	1	1	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000025217.16	Btrc	chr19	protein_coding	beta-transducin repeat containing protein
novel_NIR_10007	chr19	45543658	45544334	-	45543658	45544361	A5SS	ENSMUST00000026239.7	novel	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.17	3	15	3	15	y	0.00	0	22	0	22	n	0.00	0	25	0	25	n	0.00	0	14	0	14	n	0.06	1	17	1	17	n	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	21	0	21	n	0.00	0	16	0	16	n	0.00	0	14	0	14	n	ENSMUSG00000025218.7	Poll	chr19	protein_coding	polymerase (DNA directed), lambda
novel_NIR_10008	chr19	45548155	45548636	-	45548155	45548925	A5SS	ENSMUST00000026239.7	novel	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.14	1	6	1	6	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.15	2	11	2	11	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	ENSMUSG00000025218.7	Poll	chr19	protein_coding	polymerase (DNA directed), lambda
novel_NIR_10009	chr19	45560437	45560844	+	45560448	45560844	A5SS	ENSMUST00000047057.9	novel	0.17	10	49	10	49	y	0.05	3	54	3	54	n	0.11	5	40	5	40	n	0.12	8	56	8	56	n	0.11	9	73	9	73	n	0.18	8	36	8	36	y	0.16	10	54	10	54	y	0.14	5	32	5	32	n	0.11	5	42	5	42	n	0.10	6	55	6	55	n	0.15	8	46	8	46	y	0.18	13	60	13	60	y	ENSMUSG00000041035.10	Gm17018	chr19	protein_coding	predicted gene 17018
novel_NIR_10010	chr19	45571243	45580168	-	45567701	45580168	A3SS	ENSMUST00000160003.8	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040913.12	Fbxw4	chr19	protein_coding	F-box and WD-40 domain protein 4
novel_NIR_10011	chr19	45571243	45580168	-	45571240	45580168	A3SS	ENSMUST00000160438.3	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040913.12	Fbxw4	chr19	protein_coding	F-box and WD-40 domain protein 4
novel_NIR_10012	chr19	45580233	45624174	-	45580233	45580980	5pMXE	ENSMUST00000160438.3	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000040913.12	Fbxw4	chr19	protein_coding	F-box and WD-40 domain protein 4
novel_NIR_10013	chr19	45580233	45624174	-	45580233	45581779	5pMXE	ENSMUST00000160018.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000040913.12	Fbxw4	chr19	protein_coding	F-box and WD-40 domain protein 4
novel_NIR_10014	chr19	4565718	4591079	+	4565718	4580775	3pMXE	ENSMUST00000223659.2	novel	0.50	2	2	2	2	y	1.00	1	0	1	0	n	0.17	2	10	2	10	y	1.00	5	0	5	0	y	0.83	5	1	5	1	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.67	4	2	4	2	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000024892.18	Pcx	chr19	protein_coding	pyruvate carboxylase
novel_NIR_10015	chr19	4565718	4591079	+	4565718	4589908	A3SS&ES	ENSMUST00000225189.3	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.29	2	5	2	5	y	1.00	5	0	5	0	y	0.45	5	6	5	6	y	0.33	1	2	1	2	n	0.00	0	7	0	7	n	0.25	1	3	1	3	n	0.67	2	1	2	1	y	0.50	4	4	4	4	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000024892.18	Pcx	chr19	protein_coding	pyruvate carboxylase
novel_NIR_10016	chr19	4565718	4603719	+	4565718	4580775	3pMXE	ENSMUST00000223659.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.29	4	10	4	10	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000024892.18	Pcx	chr19	protein_coding	pyruvate carboxylase
novel_NIR_10017	chr19	4565718	4603719	+	4565718	4589908	A3SS&ES	ENSMUST00000225189.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.44	4	5	4	5	y	1.00	1	0	1	0	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000024892.18	Pcx	chr19	protein_coding	pyruvate carboxylase
novel_NIR_10018	chr19	4565718	4651607	+	4565718	4580775	3pMXE	ENSMUST00000223659.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.09	1	10	1	10	n	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000024892.18	Pcx	chr19	protein_coding	pyruvate carboxylase
novel_NIR_10019	chr19	4565718	4651607	+	4565718	4589908	A3SS&ES	ENSMUST00000225189.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.17	1	5	1	5	n	-	-	-	-	-	-	0.14	1	6	1	6	n	0.33	1	2	1	2	n	0.00	0	7	0	7	n	0.40	2	3	2	3	y	0.50	1	1	1	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	ENSMUSG00000024892.18	Pcx	chr19	protein_coding	pyruvate carboxylase
novel_NIR_10020	chr19	4571587	4651628	+	4608937	4651628	5pMXE	ENSMUST00000236457.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024892.18	Pcx	chr19	protein_coding	pyruvate carboxylase
novel_NIR_10021	chr19	4571587	4651628	+	4644488	4651628	5pMXE	ENSMUST00000238089.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.23	3	10	3	10	y	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000024892.18	Pcx	chr19	protein_coding	pyruvate carboxylase
novel_NIR_10022	chr19	45752329	45753889	-	45749647	45753889	A3SS	ENSMUST00000236960.2	novel	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.38	3	5	3	5	y	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.13	2	13	2	13	n	ENSMUSG00000025220.9	Oga	chr19	protein_coding	O-GlcNAcase
novel_NIR_10023	chr19	46055725	46057478	+	46055725	46060743	A3SS	ENSMUST00000099392.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000055491.15	Pprc1	chr19	protein_coding	peroxisome proliferative activated receptor, gamma, coactivator-related 1
novel_NIR_10024	chr19	46059850	46059964	+	46059850	46059958	A3SS	ENSMUST00000111899.8	novel	0.08	2	23	2	23	n	0.05	1	20	1	20	n	0.14	6	36	6	36	n	0.00	0	20	0	20	n	0.07	2	26	2	26	n	0.14	3	19	3	19	n	0.19	6	25	6	25	y	0.00	0	5	0	5	n	0.12	2	15	2	15	n	0.08	2	24	2	24	n	0.12	1	7	1	7	n	0.09	2	20	2	20	n	ENSMUSG00000055491.15	Pprc1	chr19	protein_coding	peroxisome proliferative activated receptor, gamma, coactivator-related 1
novel_NIR_10025	chr19	4621132	4651628	+	4590115	4651628	A5SS	ENSMUST00000225189.3	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.29	2	5	2	5	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	1.00	6	0	6	0	y	ENSMUSG00000024892.18	Pcx	chr19	protein_coding	pyruvate carboxylase
novel_NIR_10026	chr19	4621132	4651628	+	4608937	4651628	A5SS	ENSMUST00000236457.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	ENSMUSG00000024892.18	Pcx	chr19	protein_coding	pyruvate carboxylase
novel_NIR_10027	chr19	4621132	4651628	+	4644470	4651628	5pMXE	ENSMUST00000113825.4	novel	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	50	0	50	n	0.00	0	12	0	12	n	0.09	2	21	2	21	n	0.00	0	42	0	42	n	0.00	0	42	0	42	n	0.00	0	39	0	39	n	0.00	0	2	0	2	n	0.00	0	42	0	42	n	0.00	0	27	0	27	n	0.32	6	13	6	13	y	ENSMUSG00000024892.18	Pcx	chr19	protein_coding	pyruvate carboxylase
novel_NIR_10028	chr19	4621132	4651628	+	4644488	4651628	5pMXE	ENSMUST00000238089.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.22	2	7	2	7	y	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.00	0	1	0	1	n	0.67	6	3	6	3	y	ENSMUSG00000024892.18	Pcx	chr19	protein_coding	pyruvate carboxylase
novel_NIR_10029	chr19	46248235	46249149	+	46248235	46249152	A3SS	ENSMUST00000026254.14	novel	0.16	3	16	3	16	y	0.11	1	8	1	8	n	0.05	3	52	3	52	n	0.00	0	46	0	46	n	0.00	0	38	0	38	n	0.26	6	17	6	17	y	0.00	0	25	0	25	n	0.17	6	29	6	29	y	0.00	0	27	0	27	n	0.00	0	17	0	17	n	0.15	4	22	4	22	y	0.00	0	23	0	23	n	ENSMUSG00000025224.17	Gbf1	chr19	protein_coding	golgi-specific brefeldin A-resistance factor 1
novel_NIR_10030	chr19	46258420	46258777	+	46258420	46259113	A3SS	ENSMUST00000176853.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025224.17	Gbf1	chr19	protein_coding	golgi-specific brefeldin A-resistance factor 1
novel_NIR_10031	chr19	46300131	46300209	+	46300131	46300212	A3SS	ENSMUST00000073116.13	novel	0.05	1	19	1	19	n	0.04	1	22	1	22	n	0.05	3	54	3	54	n	0.15	2	11	2	11	y	0.08	2	23	2	23	n	0.12	3	23	3	23	n	0.00	0	21	0	21	n	0.00	0	34	0	34	n	0.25	3	9	3	9	y	0.06	2	32	2	32	n	0.00	0	13	0	13	n	0.06	2	29	2	29	n	ENSMUSG00000025225.16	Nfkb2	chr19	protein_coding	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100
novel_NIR_10032	chr19	46320074	46320196	-	46320079	46320196	A3SS	ENSMUST00000235977.2	novel	0.29	2	5	2	5	y	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.25	1	3	1	3	n	0.29	2	5	2	5	y	0.20	1	4	1	4	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	15	0	15	n	ENSMUSG00000036748.17	Cuedc2	chr19	protein_coding	CUE domain containing 2
novel_NIR_10033	chr19	46326859	46326959	-	46326859	46327008	A5SS	ENSMUST00000167861.8	novel	0.57	4	3	4	3	y	0.50	1	1	1	1	n	0.75	6	2	6	2	y	0.33	1	2	1	2	n	0.75	3	1	3	1	y	0.00	0	4	0	4	n	0.50	3	3	3	3	y	0.00	0	5	0	5	n	0.67	6	3	6	3	y	0.50	2	2	2	2	y	0.75	6	2	6	2	y	0.38	3	5	3	5	y	ENSMUSG00000036748.17	Cuedc2	chr19	protein_coding	CUE domain containing 2
novel_NIR_10034	chr19	46326859	46326959	-	46326869	46326959	A3SS	ENSMUST00000236651.2	novel	1.00	4	0	4	0	y	0.33	1	2	1	2	n	1.00	6	0	6	0	y	0.25	1	3	1	3	n	0.27	3	8	3	8	y	0.00	0	1	0	1	n	0.43	3	4	3	4	y	0.00	0	8	0	8	n	0.75	6	2	6	2	y	0.25	2	6	2	6	y	0.86	6	1	6	1	y	1.00	3	0	3	0	y	ENSMUSG00000036748.17	Cuedc2	chr19	protein_coding	CUE domain containing 2
novel_NIR_10035	chr19	4644488	4646905	+	4644488	4651628	A3SS	ENSMUST00000238089.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.22	2	7	2	7	y	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000024892.18	Pcx	chr19	protein_coding	pyruvate carboxylase
novel_NIR_10036	chr19	46569892	46570923	+	46561898	46570923	A5SS	ENSMUST00000237310.2	novel	0.03	1	28	1	28	n	0.00	0	14	0	14	n	0.00	0	14	0	14	n	0.10	4	35	4	35	n	0.00	0	47	0	47	n	0.04	1	22	1	22	n	0.06	2	29	2	29	n	0.00	0	28	0	28	n	0.00	0	22	0	22	n	0.12	5	35	5	35	n	0.21	4	15	4	15	y	0.07	3	37	3	37	n	ENSMUSG00000025036.8	Sfxn2	chr19	protein_coding	sideroflexin 2
novel_NIR_10037	chr19	46626135	46632792	+	46612018	46632792	A5SS	ENSMUST00000111855.5	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.27	3	8	3	8	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	1.00	2	0	2	0	y	ENSMUSG00000047731.18	Wbp1l	chr19	protein_coding	WW domain binding protein 1 like
novel_NIR_10038	chr19	46626135	46632792	+	46612972	46632792	A5SS	ENSMUST00000156649.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	3	3	3	3	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000047731.18	Wbp1l	chr19	protein_coding	WW domain binding protein 1 like
novel_NIR_10039	chr19	46633254	46640913	+	46633006	46640913	A5SS	ENSMUST00000132202.3	novel	0.44	7	9	7	9	y	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	20	0	20	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	ENSMUSG00000047731.18	Wbp1l	chr19	protein_coding	WW domain binding protein 1 like
novel_NIR_10040	chr19	46697557	46698040	+	46697557	46700660	A3SS	ENSMUST00000236465.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000003559.9	As3mt	chr19	protein_coding	arsenite methyltransferase
novel_NIR_10041	chr19	46699580	46700660	+	46697557	46700660	A5SS	ENSMUST00000236465.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.75	6	2	6	2	y	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000003559.9	As3mt	chr19	protein_coding	arsenite methyltransferase
novel_NIR_10042	chr19	46713477;46726997	46726952;46728900	+	46713477	46728900	cassetteExon	ENSMUST00000003655.9	novel	0.06	11.5	193	13;10	193	n	0.09	19.0	192	21;17	192	n	0.16	60.5	326	73;48	326	y	0.04	5.5	143	7;4	143	n	0.08	23.5	256	25;22	256	n	0.14	32.5	205	39;26	205	n	0.12	33.0	249	34;32	249	n	0.16	33.5	180	34;33	180	y	0.09	11.5	113	16;7	113	n	0.07	14.5	191	17;12	191	n	0.10	14.5	128	17;12	128	n	0.07	14.0	175	17;11	175	n	ENSMUSG00000003559.9	As3mt	chr19	protein_coding	arsenite methyltransferase
novel_NIR_10043	chr19	46886108	46886794	-	46886108	46886767	A5SS	ENSMUST00000086961.15	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.33	2	4	2	4	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000025041.18	Nt5c2	chr19	protein_coding	5'-nucleotidase, cytosolic II
novel_NIR_10044	chr19	46897080	46897929	-	46893531	46897929	A3SS	ENSMUST00000235596.2	novel	-	-	-	-	-	-	0.33	2	4	2	4	y	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000025041.18	Nt5c2	chr19	protein_coding	5'-nucleotidase, cytosolic II
novel_NIR_10045	chr19	47025759	47028483	-	47025763	47028483	A3SS	ENSMUST00000026032.7	novel	0.06	3	45	3	45	n	0.07	3	42	3	42	n	0.09	5	51	5	51	n	0.07	3	41	3	41	n	0.13	6	39	6	39	n	0.07	2	25	2	25	n	0.07	4	54	4	54	n	0.15	5	28	5	28	y	0.00	0	33	0	33	n	0.18	9	40	9	40	y	0.00	0	36	0	36	n	0.06	4	67	4	67	n	ENSMUSG00000025050.9	Pcgf6	chr19	protein_coding	polycomb group ring finger 6
novel_NIR_10046	chr19	47028581	47029698	-	47028581	47030561	A5SS	ENSMUST00000235633.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025050.9	Pcgf6	chr19	protein_coding	polycomb group ring finger 6
novel_NIR_10047	chr19	47072008	47073212	-	47072008	47073208	A5SS	ENSMUST00000237720.2	novel	1.00	15	0	15	0	y	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	8	0	8	0	y	1.00	5	0	5	0	y	1.00	15	0	15	0	y	1.00	2	0	2	0	y	1.00	12	0	12	0	y	1.00	15	0	15	0	y	1.00	16	0	16	0	y	1.00	15	0	15	0	y	ENSMUSG00000071528.5	Atp5md	chr19	protein_coding	ATP synthase membrane subunit DAPIT
novel_NIR_10048	chr19	4709529	4710262	-	4709526	4710262	A3SS	ENSMUST00000225896.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000071691.12	Gm960	chr19	protein_coding	predicted gene 960
novel_NIR_10049	chr19	47095586	47095993	+	47095590	47095993	A5SS	ENSMUST00000072141.4	novel	0.00	0	21	0	21	n	0.00	0	7	0	7	n	0.00	0	18	0	18	n	0.06	1	17	1	17	n	0.00	0	20	0	20	n	0.11	1	8	1	8	n	0.00	0	13	0	13	n	0.07	1	14	1	14	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.22	2	7	2	7	y	ENSMUSG00000025047.10	Pdcd11	chr19	protein_coding	programmed cell death 11
novel_NIR_10050	chr19	47302605	47331879	-	47302605;47308759	47308715;47331879	ES	ENSMUST00000081619.10	novel	1.00	5	0.0	5	0;0	y	-	-	-	-	-	-	1.00	6	0.0	6	0;0	y	1.00	9	0.0	9	0;0	y	1.00	10	0.0	10	0;0	y	1.00	2	0.0	2	0;0	y	0.88	7	1.0	7	2;0	y	1.00	5	0.0	5	0;0	y	1.00	3	0.0	3	0;0	y	1.00	11	0.0	11	0;0	y	1.00	8	0.0	8	0;0	y	0.93	7	0.5	7	1;0	y	ENSMUSG00000053617.13	Sh3pxd2a	chr19	protein_coding	SH3 and PX domains 2A
novel_NIR_10051	chr19	4742533	4748205	-	4742533;4746170	4746032;4748205	ES	ENSMUST00000225896.2	novel	1.00	4	0.0	4	0;0	y	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	0.80	2	0.5	2	1;0	y	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	0.67	1	0.5	1	1;0	n	0.00	0	0.5	0	1;0	n	0.50	1	1.0	1	0;2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000071691.12	Gm960	chr19	protein_coding	predicted gene 960
novel_NIR_10052	chr19	47591446	47597344	+	47568782	47597344	A5SS	ENSMUST00000026043.12	novel	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	38	0	38	n	0.00	0	19	0	19	n	0.15	4	22	4	22	y	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.08	1	11	1	11	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.04	1	25	1	25	n	ENSMUSG00000025060.16	Slk	chr19	protein_coding	STE20-like kinase
novel_NIR_10053	chr19	47616179	47617492	+	47616179	47618907	A3SS	ENSMUST00000239141.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025060.16	Slk	chr19	protein_coding	STE20-like kinase
novel_NIR_10054	chr19	47618771	47623908	+	47613923	47623908	A5SS	ENSMUST00000026043.12	novel	0.00	0	4	0	4	n	0.40	4	6	4	6	y	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.11	1	8	1	8	n	0.29	2	5	2	5	y	ENSMUSG00000025060.16	Slk	chr19	protein_coding	STE20-like kinase
novel_NIR_10055	chr19	47618771	47623908	+	47616179	47623908	A5SS	ENSMUST00000051691.8	novel	0.00	0	28	0	28	n	0.17	4	20	4	20	y	0.00	0	30	0	30	n	0.00	0	27	0	27	n	0.00	0	31	0	31	n	0.00	0	23	0	23	n	0.00	0	32	0	32	n	0.00	0	27	0	27	n	0.00	0	26	0	26	n	0.00	0	25	0	25	n	0.06	1	17	1	17	n	0.06	2	29	2	29	n	ENSMUSG00000025060.16	Slk	chr19	protein_coding	STE20-like kinase
novel_NIR_10056	chr19	47618771	47623908	+	47618978	47623908	A5SS&ES	ENSMUST00000239141.2	novel	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000025060.16	Slk	chr19	protein_coding	STE20-like kinase
novel_NIR_10057	chr19	4771263	4774108	+	4769025	4774108	A5SS	ENSMUST00000008991.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	4	0	4	0	y	ENSMUSG00000067889.8	Sptbn2	chr19	protein_coding	spectrin beta, non-erythrocytic 2
novel_NIR_10058	chr19	47847969	47851896	+	47846422	47851896	A5SS	ENSMUST00000237121.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000025068.9	Gsto1	chr19	protein_coding	glutathione S-transferase omega 1
novel_NIR_10059	chr19	47886629	47907563	-	47824256	47907563	A3SS	ENSMUST00000026048.10	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000044948.18	Cfap43	chr19	protein_coding	cilia and flagella associated protein 43
novel_NIR_10060	chr19	47886629	47907563	-	47886624	47907563	A3SS	ENSMUST00000095998.7	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000117975.2	Itprip	chr19	protein_coding	inositol 1,4,5-triphosphate receptor interacting protein
novel_NIR_10061	chr19	47886629	47907563	-	47886629;47903039	47902855;47907563	ES	ENSMUST00000237029.2	novel	1.00	1	0.0	1	0;0	n	1.00	1	0.0	1	0;0	n	0.93	7	0.5	7	0;1	y	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	1.00	1	0.0	1	0;0	n	1.00	1	0.0	1	0;0	n	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	ENSMUSG00000117975.2	Itprip	chr19	protein_coding	inositol 1,4,5-triphosphate receptor interacting protein
novel_NIR_10062	chr19	4844037	4850526	-	4844037	4851579	A5SS	ENSMUST00000177776.2	novel	0.33	2	4	2	4	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000096370.9	Gm21992	chr19	protein_coding	predicted gene 21992
novel_NIR_10063	chr19	4844037	4850526	-	4844037	4861200	A5SS	ENSMUST00000178353.2	novel	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.12	1	7	1	7	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	ENSMUSG00000096370.9	Gm21992	chr19	protein_coding	predicted gene 21992
novel_NIR_10064	chr19	4844037	4852579	-	4844037	4861200	A5SS	ENSMUST00000178353.2	novel	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.20	2	8	2	8	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	ENSMUSG00000096370.9	Gm21992	chr19	protein_coding	predicted gene 21992
novel_NIR_10065	chr19	48737836	48738881	+	48737836	48748285	A3SS	ENSMUST00000078880.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000063434.7	Sorcs3	chr19	protein_coding	sortilin-related VPS10 domain containing receptor 3
novel_NIR_10066	chr19	4977087	4977565	-	4977087	4977976	A5SS	ENSMUST00000236758.2	novel	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	41	0	41	n	0.00	0	9	0	9	n	0.00	0	22	0	22	n	0.00	0	26	0	26	n	0.08	1	11	1	11	n	0.00	0	32	0	32	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.20	2	8	2	8	y	ENSMUSG00000063904.5	Dpp3	chr19	protein_coding	dipeptidylpeptidase 3
novel_NIR_10067	chr19	4977087	4977565	-	4977087	4978091	A5SS	ENSMUST00000237394.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	ENSMUSG00000063904.5	Dpp3	chr19	protein_coding	dipeptidylpeptidase 3
novel_NIR_10068	chr19	5077187	5077353	+	5077187	5077371	A3SS	ENSMUST00000236152.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000024891.7	Slc29a2	chr19	protein_coding	solute carrier family 29 (nucleoside transporters), member 2
novel_NIR_10069	chr19	5078999	5079280	+	5078999	5079240	A3SS	ENSMUST00000236152.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024891.7	Slc29a2	chr19	protein_coding	solute carrier family 29 (nucleoside transporters), member 2
novel_NIR_10070	chr19	5079518	5080316	+	5079522	5080316	A5SS	ENSMUST00000236152.2	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000024891.7	Slc29a2	chr19	protein_coding	solute carrier family 29 (nucleoside transporters), member 2
novel_NIR_10071	chr19	5155278	5156669	-	5155278	5156009	5pMXE	ENSMUST00000237201.2	novel	0.67	4	2	4	2	y	0.67	2	1	2	1	y	1.00	6	0	6	0	y	0.73	8	3	8	3	y	1.00	10	0	10	0	y	0.90	9	1	9	1	y	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	9	0	9	0	y	1.00	3	0	3	0	y	0.83	10	2	10	2	y	0.90	9	1	9	1	y	ENSMUSG00000024870.7	Rab1b	chr19	protein_coding	RAB1B, member RAS oncogene family
novel_NIR_10072	chr19	5155278	5156674	-	5155278	5156009	5pMXE	ENSMUST00000237201.2	novel	0.60	3	2	3	2	y	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	0.75	3	1	3	1	y	ENSMUSG00000024870.7	Rab1b	chr19	protein_coding	RAB1B, member RAS oncogene family
novel_NIR_10073	chr19	5160495	5161166	-	5160444	5161166	A3SS	ENSMUST00000113728.8	novel	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	21	0	21	n	0.00	0	16	0	16	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.00	0	10	0	10	n	0.22	2	7	2	7	y	ENSMUSG00000024862.17	Klc2	chr19	protein_coding	kinesin light chain 2
novel_NIR_10074	chr19	5161748	5161850	-	5161748	5161854	A5SS	ENSMUST00000113728.8	novel	0.00	0	24	0	24	n	0.00	0	26	0	26	n	0.00	0	16	0	16	n	0.05	1	18	1	18	n	0.00	0	16	0	16	n	0.00	0	23	0	23	n	0.00	0	29	0	29	n	0.00	0	20	0	20	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.00	0	16	0	16	n	0.15	2	11	2	11	y	ENSMUSG00000024862.17	Klc2	chr19	protein_coding	kinesin light chain 2
novel_NIR_10075	chr19	53182884	53205232	+	53129145	53205232	A5SS	ENSMUST00000111741.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000025026.16	Add3	chr19	protein_coding	adducin 3 (gamma)
novel_NIR_10076	chr19	53182884	53205232	+	53130095	53205232	A5SS	ENSMUST00000237224.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000025026.16	Add3	chr19	protein_coding	adducin 3 (gamma)
novel_NIR_10077	chr19	53182884	53205232	+	53131520	53205232	A5SS	ENSMUST00000050096.15	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	ENSMUSG00000025026.16	Add3	chr19	protein_coding	adducin 3 (gamma)
novel_NIR_10078	chr19	53182884	53205232	+	53135186	53205232	A5SS	ENSMUST00000237832.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000025026.16	Add3	chr19	protein_coding	adducin 3 (gamma)
novel_NIR_10079	chr19	53182884	53205232	+	53148063	53205232	A5SS	ENSMUST00000235133.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000025026.16	Add3	chr19	protein_coding	adducin 3 (gamma)
novel_NIR_10080	chr19	53182884	53205232	+	53186541	53205232	5pMXE	ENSMUST00000237153.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000025026.16	Add3	chr19	protein_coding	adducin 3 (gamma)
novel_NIR_10081	chr19	53182884	53205232	+	53186662	53205232	5pMXE	ENSMUST00000237099.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000025026.16	Add3	chr19	protein_coding	adducin 3 (gamma)
novel_NIR_10082	chr19	53182884	53205232	+	53191906	53205232	A5SS&ES	ENSMUST00000238130.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000025026.16	Add3	chr19	protein_coding	adducin 3 (gamma)
novel_NIR_10083	chr19	53319914	53326280	+	53319914	53320447	3pMXE	ENSMUST00000237837.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000025025.15	Mxi1	chr19	protein_coding	MAX interactor 1, dimerization protein
novel_NIR_10084	chr19	53319914	53326280	+	53319914	53357973	A3SS	ENSMUST00000237480.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000025025.15	Mxi1	chr19	protein_coding	MAX interactor 1, dimerization protein
novel_NIR_10085	chr19	53377853	53378592	-	53377853	53378294	5pMXE	ENSMUST00000237529.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025024.8	Smndc1	chr19	protein_coding	survival motor neuron domain containing 1
novel_NIR_10086	chr19	53377853	53378592	-	53377853	53378578	A5SS	ENSMUST00000236245.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025024.8	Smndc1	chr19	protein_coding	survival motor neuron domain containing 1
novel_NIR_10087	chr19	53377853	53378592	-	53377853	53378847	A5SS	ENSMUST00000025997.7	novel	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	22	0	22	n	0.00	0	25	0	25	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.08	1	11	1	11	n	0.21	4	15	4	15	y	0.00	0	8	0	8	n	0.00	0	20	0	20	n	ENSMUSG00000025024.8	Smndc1	chr19	protein_coding	survival motor neuron domain containing 1
novel_NIR_10088	chr19	53839269	53839608	+	53838619	53839608	A5SS	ENSMUST00000164202.9	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.11	1	8	1	8	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000043639.16	Rbm20	chr19	protein_coding	RNA binding motif protein 20
novel_NIR_10089	chr19	53880887	53884200	+	53880887	53884432	A3SS	ENSMUST00000235854.2	novel	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.00	0	5	0	5	n	ENSMUSG00000024975.14	Pdcd4	chr19	protein_coding	programmed cell death 4
novel_NIR_10090	chr19	53880887	53884200	+	53880887	53895880	A3SS	ENSMUST00000074371.13	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	ENSMUSG00000024975.14	Pdcd4	chr19	protein_coding	programmed cell death 4
novel_NIR_10091	chr19	53880887	53885637	+	53880887	53884432	3pMXE	ENSMUST00000235854.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.33	2	4	2	4	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000024975.14	Pdcd4	chr19	protein_coding	programmed cell death 4
novel_NIR_10092	chr19	53880887	53885637	+	53880887	53895880	A3SS	ENSMUST00000074371.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000024975.14	Pdcd4	chr19	protein_coding	programmed cell death 4
novel_NIR_10093	chr19	53892609	53895880	+	53880887	53895880	A5SS	ENSMUST00000074371.13	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.60	3	2	3	2	y	1.00	4	0	4	0	y	-	-	-	-	-	-	0.50	3	3	3	3	y	1.00	4	0	4	0	y	0.75	3	1	3	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.78	7	2	7	2	y	ENSMUSG00000024975.14	Pdcd4	chr19	protein_coding	programmed cell death 4
novel_NIR_10094	chr19	53932732	53975885	+	53932833	53975885	5pMXE	ENSMUST00000169861.9	novel	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	4	0	4	0	y	1.00	5	0	5	0	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.20	1	4	1	4	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000024976.15	Shoc2	chr19	protein_coding	Shoc2, leucine rich repeat scaffold protein
novel_NIR_10095	chr19	53932732	53975885	+	53933444	53975885	5pMXE	ENSMUST00000025932.9	novel	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.00	0	14	0	14	n	0.57	4	3	4	3	y	0.42	5	7	5	7	y	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.10	1	9	1	9	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	ENSMUSG00000024976.15	Shoc2	chr19	protein_coding	Shoc2, leucine rich repeat scaffold protein
novel_NIR_10096	chr19	53933326	53975885	+	53932833	53975885	A5SS	ENSMUST00000169861.9	novel	0.57	4	3	4	3	y	-	-	-	-	-	-	0.92	12	1	12	1	y	-	-	-	-	-	-	1.00	3	0	3	0	y	0.90	9	1	9	1	y	1.00	2	0	2	0	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.58	7	5	7	5	y	1.00	7	0	7	0	y	0.77	10	3	10	3	y	ENSMUSG00000024976.15	Shoc2	chr19	protein_coding	Shoc2, leucine rich repeat scaffold protein
novel_NIR_10097	chr19	53933326	53975885	+	53933444	53975885	A5SS	ENSMUST00000025932.9	novel	0.50	4	4	4	4	y	0.00	0	2	0	2	n	0.46	12	14	12	14	y	0.00	0	3	0	3	n	0.30	3	7	3	7	y	0.82	9	2	9	2	y	0.29	2	5	2	5	y	0.00	0	9	0	9	n	-	-	-	-	-	-	0.47	7	8	7	8	y	0.64	7	4	7	4	y	0.67	10	5	10	5	y	ENSMUSG00000024976.15	Shoc2	chr19	protein_coding	Shoc2, leucine rich repeat scaffold protein
novel_NIR_10098	chr19	53933326	53975885	+	53938374	53975885	A5SS&ES	ENSMUST00000237296.2	novel	0.80	4	1	4	1	y	-	-	-	-	-	-	0.80	12	3	12	3	y	0.00	0	3	0	3	n	0.75	3	1	3	1	y	1.00	9	0	9	0	y	0.50	2	2	2	2	y	0.00	0	8	0	8	n	0.00	0	2	0	2	n	1.00	7	0	7	0	y	0.88	7	1	7	1	y	0.91	10	1	10	1	y	ENSMUSG00000024976.15	Shoc2	chr19	protein_coding	Shoc2, leucine rich repeat scaffold protein
novel_NIR_10099	chr19	5457111	5458793	+	5457111	5465635	A3SS	ENSMUST00000153017.7	novel	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	14	0	14	n	0.43	3	4	3	4	y	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.17	1	5	1	5	n	0.00	0	7	0	7	n	0.10	1	9	1	9	n	ENSMUSG00000086938.10	4930481A15Rik	chr19	lncRNA	RIKEN cDNA 4930481A15 gene
novel_NIR_10100	chr19	5457111	5465660	+	5457111	5465635	A3SS	ENSMUST00000153017.7	novel	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	14	0	14	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.12	1	7	1	7	n	0.18	2	9	2	9	y	ENSMUSG00000086938.10	4930481A15Rik	chr19	lncRNA	RIKEN cDNA 4930481A15 gene
novel_NIR_10101	chr19	5467494	5467623	+	5467494	5472149	A3SS	ENSMUST00000174415.3	novel	1.00	3	0	3	0	y	1.00	6	0	6	0	y	1.00	3	0	3	0	y	0.57	4	3	4	3	y	1.00	10	0	10	0	y	1.00	6	0	6	0	y	1.00	9	0	9	0	y	1.00	1	0	1	0	n	1.00	7	0	7	0	y	1.00	8	0	8	0	y	0.33	1	2	1	2	n	1.00	8	0	8	0	y	ENSMUSG00000086938.10	4930481A15Rik	chr19	lncRNA	RIKEN cDNA 4930481A15 gene
novel_NIR_10102	chr19	5468279	5472030	+	5468279	5472149	A3SS	ENSMUST00000128542.3	novel	0.00	0	3	0	3	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	0.75	6	2	6	2	y	0.20	1	4	1	4	n	0.50	3	3	3	3	y	0.83	5	1	5	1	y	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.57	4	3	4	3	y	0.71	5	2	5	2	y	ENSMUSG00000086938.10	4930481A15Rik	chr19	lncRNA	RIKEN cDNA 4930481A15 gene
novel_NIR_10103	chr19	5507269	5507368	-	5507212	5507368	A3SS	ENSMUST00000236881.2	novel	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	1.00	1	0	1	0	n	0.00	0	9	0	9	n	0.40	2	3	2	3	y	0.00	0	4	0	4	n	0.00	0	7	0	7	n	ENSMUSG00000095098.3	Ccdc85b	chr19	protein_coding	coiled-coil domain containing 85B
novel_NIR_10104	chr19	55091559	55093027	-	55091559	55093059	A5SS	ENSMUST00000237146.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.22	2	7	2	7	y	0.50	1	1	1	1	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000024978.12	Gpam	chr19	protein_coding	glycerol-3-phosphate acyltransferase, mitochondrial
novel_NIR_10105	chr19	55091559	55114483	-	55091559	55093059	A5SS&ES	ENSMUST00000237146.2	novel	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.12	1	7	1	7	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000024978.12	Gpam	chr19	protein_coding	glycerol-3-phosphate acyltransferase, mitochondrial
novel_NIR_10106	chr19	55093110	55114483	-	55093110	55115446	A5SS	ENSMUST00000237146.2	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000024978.12	Gpam	chr19	protein_coding	glycerol-3-phosphate acyltransferase, mitochondrial
novel_NIR_10107	chr19	55114676	55115446	-	55093110	55115446	A3SS	ENSMUST00000237146.2	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.20	2	8	2	8	n	0.00	0	5	0	5	n	0.25	2	6	2	6	y	0.00	0	1	0	1	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000024978.12	Gpam	chr19	protein_coding	glycerol-3-phosphate acyltransferase, mitochondrial
novel_NIR_10108	chr19	55285510	55287127	-	55278116	55287127	A3SS	ENSMUST00000226103.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	4	0	4	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000024982.11	Zdhhc6	chr19	protein_coding	zinc finger, DHHC domain containing 6
novel_NIR_10109	chr19	55285510	55287127	-	55285510	55290990	A5SS	ENSMUST00000225495.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024982.11	Zdhhc6	chr19	protein_coding	zinc finger, DHHC domain containing 6
novel_NIR_10110	chr19	55287059	55290990	-	55278116	55290990	A3SS	ENSMUST00000225963.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.33	2	4	2	4	y	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.50	1	1	1	1	n	ENSMUSG00000024982.11	Zdhhc6	chr19	protein_coding	zinc finger, DHHC domain containing 6
novel_NIR_10111	chr19	55287059	55290990	-	55285510	55290990	A3SS	ENSMUST00000225495.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000024982.11	Zdhhc6	chr19	protein_coding	zinc finger, DHHC domain containing 6
novel_NIR_10112	chr19	55287059	55290990	-	55290301	55290990	3pMXE	ENSMUST00000224291.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000024982.11	Zdhhc6	chr19	protein_coding	zinc finger, DHHC domain containing 6
novel_NIR_10113	chr19	55303204	55303932	-	55303204	55304112	A5SS	ENSMUST00000226103.2	novel	0.78	7	2	7	2	y	0.38	5	8	5	8	y	0.53	19	17	19	17	y	0.48	12	13	12	13	y	0.29	6	15	6	15	y	0.60	6	4	6	4	y	0.24	4	13	4	13	y	0.44	7	9	7	9	y	0.22	2	7	2	7	y	0.32	8	17	8	17	y	0.30	6	14	6	14	y	0.20	4	16	4	16	y	ENSMUSG00000024982.11	Zdhhc6	chr19	protein_coding	zinc finger, DHHC domain containing 6
novel_NIR_10114	chr19	55303204	55303949	-	55303204	55304112	A5SS	ENSMUST00000226103.2	novel	0.78	7	2	7	2	y	0.53	9	8	9	8	y	0.53	19	17	19	17	y	0.24	4	13	4	13	y	0.29	6	15	6	15	y	0.64	7	4	7	4	y	0.19	3	13	3	13	y	0.47	8	9	8	9	y	0.00	0	7	0	7	n	0.37	10	17	10	17	y	0.18	3	14	3	14	y	0.24	5	16	5	16	y	ENSMUSG00000024982.11	Zdhhc6	chr19	protein_coding	zinc finger, DHHC domain containing 6
novel_NIR_10115	chr19	55303204	55303987	-	55303204	55304112	A5SS	ENSMUST00000226103.2	novel	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	17	0	17	n	0.00	0	13	0	13	n	0.17	3	15	3	15	y	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.12	1	7	1	7	n	0.00	0	17	0	17	n	0.00	0	14	0	14	n	0.06	1	16	1	16	n	ENSMUSG00000024982.11	Zdhhc6	chr19	protein_coding	zinc finger, DHHC domain containing 6
novel_NIR_10116	chr19	55316888	55329146	+	55316888	55318510	3pMXE	ENSMUST00000225051.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024983.11	Vti1a	chr19	protein_coding	vesicle transport through interaction with t-SNAREs 1A
novel_NIR_10117	chr19	55316888	55329146	+	55316888	55354725	A3SS	ENSMUST00000226069.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024983.11	Vti1a	chr19	protein_coding	vesicle transport through interaction with t-SNAREs 1A
novel_NIR_10118	chr19	55380300	55387275	+	55380300	55419665	A3SS	ENSMUST00000224396.2	novel	0.67	2	1	2	1	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000024983.11	Vti1a	chr19	protein_coding	vesicle transport through interaction with t-SNAREs 1A
novel_NIR_10119	chr19	55380300	55434610	+	55380300;55419726	55419665;55434610	ES	ENSMUST00000224396.2	novel	0.00	0	1.5	0	1;2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0.0	3	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	1.00	4	0.0	4	0;0	y	ENSMUSG00000024983.11	Vti1a	chr19	protein_coding	vesicle transport through interaction with t-SNAREs 1A
novel_NIR_10120	chr19	5548119	5548208	-	5548056	5548208	A3SS	ENSMUST00000237945.2	novel	0.15	2	11	2	11	y	0.00	0	18	0	18	n	0.00	0	18	0	18	n	0.00	0	18	0	18	n	0.00	0	22	0	22	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	21	0	21	n	0.00	0	17	0	17	n	0.00	0	21	0	21	n	ENSMUSG00000056185.6	Snx32	chr19	protein_coding	sorting nexin 32
novel_NIR_10121	chr19	5548510	5548748	-	5548534	5548748	A3SS	ENSMUST00000237945.2	novel	0.00	0	19	0	19	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	22	0	22	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.17	2	10	2	10	y	0.00	0	22	0	22	n	ENSMUSG00000056185.6	Snx32	chr19	protein_coding	sorting nexin 32
novel_NIR_10122	chr19	55487736	55494237	+	55487736	55564906	A3SS	ENSMUST00000225529.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000024983.11	Vti1a	chr19	protein_coding	vesicle transport through interaction with t-SNAREs 1A
novel_NIR_10123	chr19	55487736	55494237	+	55487736	55612249	A3SS	ENSMUST00000223690.2	novel	0.00	0	22	0	22	n	0.00	0	11	0	11	n	0.00	0	22	0	22	n	0.00	0	17	0	17	n	0.00	0	35	0	35	n	0.00	0	20	0	20	n	0.00	0	29	0	29	n	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.00	0	22	0	22	n	0.00	0	25	0	25	n	0.18	3	14	3	14	y	ENSMUSG00000024983.11	Vti1a	chr19	protein_coding	vesicle transport through interaction with t-SNAREs 1A
novel_NIR_10124	chr19	55487747	55612249	+	55487736	55612249	A5SS	ENSMUST00000223690.2	novel	0.00	0	22	0	22	n	0.21	3	11	3	11	y	0.08	2	22	2	22	n	0.00	0	17	0	17	n	0.08	3	35	3	35	n	0.09	2	20	2	20	n	0.03	1	29	1	29	n	0.07	1	14	1	14	n	0.00	0	16	0	16	n	0.27	8	22	8	22	y	0.00	0	25	0	25	n	0.07	1	14	1	14	n	ENSMUSG00000024983.11	Vti1a	chr19	protein_coding	vesicle transport through interaction with t-SNAREs 1A
novel_NIR_10125	chr19	5561284	5567681	+	5562974	5567681	5pMXE	ENSMUST00000210638.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000109695.2	Gm31166	chr19	transcribed_processed_pseudogene	predicted gene, 31166
novel_NIR_10126	chr19	5569007	5581568	+	5567720	5581568	A5SS	ENSMUST00000210638.2	novel	0.50	3	3	3	3	y	0.33	1	2	1	2	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.60	3	2	3	2	y	0.50	1	1	1	1	n	0.44	4	5	4	5	n	-	-	-	-	-	-	1.00	4	0	4	0	y	0.33	1	2	1	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000109695.2	Gm31166	chr19	transcribed_processed_pseudogene	predicted gene, 31166
novel_NIR_10127	chr19	5581686	5599710	+	5581686	5599707	A3SS	ENSMUST00000210638.2	novel	0.75	3	1	3	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000109695.2	Gm31166	chr19	transcribed_processed_pseudogene	predicted gene, 31166
novel_NIR_10128	chr19	5581686	5599710	+	5581686;5592573	5592379;5599710	ES	ENSMUST00000211026.2	novel	1.00	3	0.0	3	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0.0	3	0;0	y	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	1.00	3	0.0	3	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000109695.2	Gm31166	chr19	transcribed_processed_pseudogene	predicted gene, 31166
novel_NIR_10129	chr19	55912376	55915116	+	55912376	55912962	A3SS&ES	ENSMUST00000061496.17	novel	0.50	4	4	4	4	y	0.40	2	3	2	3	y	0.22	2	7	2	7	y	0.83	5	1	5	1	y	0.56	10	8	10	8	y	1.00	2	0	2	0	y	0.00	0	4	0	4	n	0.00	0	1	0	1	n	1.00	5	0	5	0	y	0.00	0	2	0	2	n	0.53	8	7	8	7	y	1.00	5	0	5	0	y	ENSMUSG00000024985.21	Tcf7l2	chr19	protein_coding	transcription factor 7 like 2, T cell specific, HMG box
novel_NIR_10130	chr19	55912376	55915116	+	55912376	55914409	A3SS&ES	ENSMUST00000111662.11	novel	0.67	4	2	4	2	y	0.50	2	2	2	2	y	0.50	2	2	2	2	y	0.83	5	1	5	1	y	0.77	10	3	10	3	y	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.71	5	2	5	2	y	0.00	0	3	0	3	n	0.89	8	1	8	1	y	1.00	5	0	5	0	y	ENSMUSG00000024985.21	Tcf7l2	chr19	protein_coding	transcription factor 7 like 2, T cell specific, HMG box
novel_NIR_10131	chr19	55912376	55915116	+	55912376	55919866	A3SS	ENSMUST00000041717.14	novel	0.80	4	1	4	1	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	0.71	5	2	5	2	y	0.77	10	3	10	3	y	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	1.00	5	0	5	0	y	0.00	0	4	0	4	n	1.00	8	0	8	0	y	0.71	5	2	5	2	y	ENSMUSG00000024985.21	Tcf7l2	chr19	protein_coding	transcription factor 7 like 2, T cell specific, HMG box
novel_NIR_10132	chr19	55912376	55915116	+	55912376;55914481	55914409;55915116	ES	ENSMUST00000153888.9	novel	0.57	4	3.0	4	2;4	y	0.44	2	2.5	2	2;3	y	0.36	2	3.5	2	2;5	y	0.71	5	2.0	5	1;3	y	0.74	10	3.5	10	3;4	y	0.57	2	1.5	2	0;3	y	0.00	0	5.5	0	3;8	n	0.00	0	3.5	0	5;2	n	0.67	5	2.5	5	2;3	y	0.00	0	3.5	0	3;4	n	0.67	8	4.0	8	1;7	y	0.83	5	1.0	5	0;2	y	ENSMUSG00000024985.21	Tcf7l2	chr19	protein_coding	transcription factor 7 like 2, T cell specific, HMG box
novel_NIR_10133	chr19	55913012	55915116	+	55913012	55914409	A3SS&ES	ENSMUST00000111656.8	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.17	1	5	1	5	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	ENSMUSG00000024985.21	Tcf7l2	chr19	protein_coding	transcription factor 7 like 2, T cell specific, HMG box
novel_NIR_10134	chr19	55913012	55915116	+	55913012	55919866	A3SS	ENSMUST00000061496.17	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000024985.21	Tcf7l2	chr19	protein_coding	transcription factor 7 like 2, T cell specific, HMG box
novel_NIR_10135	chr19	55913012	55915116	+	55914481	55915116	A5SS&ES	ENSMUST00000153888.9	novel	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	ENSMUSG00000024985.21	Tcf7l2	chr19	protein_coding	transcription factor 7 like 2, T cell specific, HMG box
novel_NIR_10136	chr19	56275679	56276322	+	56275679	56276344	A3SS	ENSMUST00000078284.13	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000025075.15	Habp2	chr19	protein_coding	hyaluronic acid binding protein 2
novel_NIR_10137	chr19	56299653	56300084	+	56299653	56300210	A3SS	ENSMUST00000165407.2	novel	0.07	1	14	1	14	n	0.00	0	27	0	27	n	0.52	11	10	11	10	y	0.15	5	29	5	29	y	0.22	9	32	9	32	y	0.44	4	5	4	5	y	0.05	1	19	1	19	n	0.24	4	13	4	13	y	0.24	6	19	6	19	y	0.27	9	24	9	24	y	0.28	10	26	10	26	y	0.15	4	23	4	23	y	ENSMUSG00000025075.15	Habp2	chr19	protein_coding	hyaluronic acid binding protein 2
novel_NIR_10138	chr19	56299653	56300145	+	56299653	56300210	A3SS	ENSMUST00000165407.2	novel	0.00	0	14	0	14	n	0.00	0	27	0	27	n	0.00	0	10	0	10	n	0.00	0	29	0	29	n	0.00	0	32	0	32	n	0.17	1	5	1	5	n	0.00	0	19	0	19	n	0.00	0	13	0	13	n	0.00	0	19	0	19	n	0.00	0	24	0	24	n	0.19	6	26	6	26	y	0.00	0	23	0	23	n	ENSMUSG00000025075.15	Habp2	chr19	protein_coding	hyaluronic acid binding protein 2
novel_NIR_10139	chr19	56301398	56301529	+	56301398	56302422	A3SS	ENSMUST00000166049.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025075.15	Habp2	chr19	protein_coding	hyaluronic acid binding protein 2
novel_NIR_10140	chr19	56301398	56301529	+	56301398	56303659	A3SS	ENSMUST00000171341.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025075.15	Habp2	chr19	protein_coding	hyaluronic acid binding protein 2
novel_NIR_10141	chr19	56303577	56303659	+	56301398	56303659	A5SS	ENSMUST00000171341.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025075.15	Habp2	chr19	protein_coding	hyaluronic acid binding protein 2
novel_NIR_10142	chr19	56370799	56372491	-	56370796	56372491	A3SS	ENSMUST00000167239.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.39	35	54	35	54	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000049134.16	Nrap	chr19	protein_coding	nebulin-related anchoring protein
novel_NIR_10143	chr19	56536135	56536628	-	56536135	56536406	5pMXE	ENSMUST00000182059.2	novel	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.33	4	8	4	8	y	0.00	0	3	0	3	n	0.14	1	6	1	6	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.33	1	2	1	2	n	0.12	1	7	1	7	n	ENSMUSG00000025077.14	Dclre1a	chr19	protein_coding	DNA cross-link repair 1A
novel_NIR_10144	chr19	56536135	56536628	-	56536135	56536619	A5SS	ENSMUST00000182276.2	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.80	4	1	4	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	ENSMUSG00000025077.14	Dclre1a	chr19	protein_coding	DNA cross-link repair 1A
novel_NIR_10145	chr19	56580239	56580859	+	56580239	56580825	A3SS	ENSMUST00000071423.7	novel	0.20	4	16	4	16	y	0.09	1	10	1	10	n	0.09	3	30	3	30	n	0.06	1	17	1	17	n	0.04	1	23	1	23	n	0.00	0	16	0	16	n	0.00	0	24	0	24	n	0.08	1	11	1	11	n	0.41	7	10	7	10	y	0.12	3	22	3	22	n	0.09	2	20	2	20	n	0.00	0	11	0	11	n	ENSMUSG00000025078.10	Nhlrc2	chr19	protein_coding	NHL repeat containing 2
novel_NIR_10146	chr19	5687490	5688460	+	5688176	5688460	5pMXE	ENSMUST00000237863.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024927.9	Rela	chr19	protein_coding	v-rel reticuloendotheliosis viral oncogene homolog A (avian)
novel_NIR_10147	chr19	5695615	5696531	+	5695615	5696622	A3SS	ENSMUST00000238000.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000024927.9	Rela	chr19	protein_coding	v-rel reticuloendotheliosis viral oncogene homolog A (avian)
novel_NIR_10148	chr19	5702789	5704027	-	5702767	5704027	A3SS	ENSMUST00000238092.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000056917.14	Sipa1	chr19	protein_coding	signal-induced proliferation associated gene 1
novel_NIR_10149	chr19	5702789	5704027	-	5702901	5704027	A3SS	ENSMUST00000169854.2	novel	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.31	4	9	4	9	y	0.00	0	6	0	6	n	0.00	0	19	0	19	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	ENSMUSG00000056917.14	Sipa1	chr19	protein_coding	signal-induced proliferation associated gene 1
novel_NIR_10150	chr19	57104897	57121294	-	57072035	57121294	A3SS	ENSMUST00000079360.12	novel	0.08	1	12	1	12	n	0.27	3	8	3	8	y	0.17	3	15	3	15	y	0.00	0	18	0	18	n	0.08	2	23	2	23	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.18	2	9	2	9	y	0.15	3	17	3	17	y	0.06	1	16	1	16	n	0.09	1	10	1	10	n	0.16	6	31	6	31	y	ENSMUSG00000025085.17	Ablim1	chr19	protein_coding	actin-binding LIM protein 1
novel_NIR_10151	chr19	57104897	57121294	-	57104897	57107184	5pMXE	ENSMUST00000150425.2	novel	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	6	0	6	0	y	ENSMUSG00000025085.17	Ablim1	chr19	protein_coding	actin-binding LIM protein 1
novel_NIR_10152	chr19	57104897	57121294	-	57119419	57121294	3pMXE	ENSMUST00000128212.2	novel	0.50	1	1	1	1	n	1.00	3	0	3	0	y	0.60	3	2	3	2	y	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.75	3	1	3	1	y	0.50	1	1	1	1	n	0.50	1	1	1	1	n	0.75	6	2	6	2	y	ENSMUSG00000025085.17	Ablim1	chr19	protein_coding	actin-binding LIM protein 1
novel_NIR_10153	chr19	5715651	5715736	-	5715655	5715736	A3SS	ENSMUST00000113615.9	novel	0.00	0	35	0	35	n	0.16	8	42	8	42	y	0.00	0	44	0	44	n	0.00	0	25	0	25	n	0.00	0	52	0	52	n	0.00	0	28	0	28	n	0.07	5	62	5	62	n	0.00	0	31	0	31	n	0.00	0	37	0	37	n	0.02	1	55	1	55	n	0.02	1	42	1	42	n	0.00	0	36	0	36	n	ENSMUSG00000054874.13	Pcnx3	chr19	protein_coding	pecanex homolog 3
novel_NIR_10154	chr19	57161891	57237575	-	57161891	57185731	5pMXE	ENSMUST00000099294.9	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.33	2	4	2	4	y	ENSMUSG00000025085.17	Ablim1	chr19	protein_coding	actin-binding LIM protein 1
novel_NIR_10155	chr19	57161891	57237575	-	57161891	57204146	5pMXE	ENSMUST00000079360.12	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000025085.17	Ablim1	chr19	protein_coding	actin-binding LIM protein 1
novel_NIR_10156	chr19	57161891	57237575	-	57161891	57227609	5pMXE	ENSMUST00000111559.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000025085.17	Ablim1	chr19	protein_coding	actin-binding LIM protein 1
novel_NIR_10157	chr19	57161891	57237575	-	57161891	57303125	A5SS	ENSMUST00000156316.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.22	2	7	2	7	y	ENSMUSG00000025085.17	Ablim1	chr19	protein_coding	actin-binding LIM protein 1
novel_NIR_10158	chr19	5716311	5716537	-	5715869	5716537	A3SS	ENSMUST00000133136.2	novel	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000054874.13	Pcnx3	chr19	protein_coding	pecanex homolog 3
novel_NIR_10159	chr19	5731575	5733305	-	5731581	5733305	A3SS	ENSMUST00000113615.9	novel	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.18	2	9	2	9	y	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	22	0	22	n	0.00	0	10	0	10	n	0.00	0	20	0	20	n	ENSMUSG00000054874.13	Pcnx3	chr19	protein_coding	pecanex homolog 3
novel_NIR_10160	chr19	5731575	5733305	-	5731620	5733305	A3SS	ENSMUST00000127876.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.29	2	5	2	5	y	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	ENSMUSG00000054874.13	Pcnx3	chr19	protein_coding	pecanex homolog 3
novel_NIR_10161	chr19	5731620	5733335	-	5731581	5733335	A3SS	ENSMUST00000145270.8	novel	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.67	2	1	2	1	y	0.00	0	7	0	7	n	0.57	4	3	4	3	y	0.33	1	2	1	2	n	0.33	1	2	1	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.12	1	7	1	7	n	ENSMUSG00000054874.13	Pcnx3	chr19	protein_coding	pecanex homolog 3
novel_NIR_10162	chr19	5731620	5733335	-	5731602	5733335	A3SS	ENSMUST00000141577.2	novel	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.29	2	5	2	5	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	ENSMUSG00000054874.13	Pcnx3	chr19	protein_coding	pecanex homolog 3
novel_NIR_10163	chr19	5731620	5733335	-	5731620	5733305	A5SS	ENSMUST00000127876.8	novel	1.00	1	0	1	0	n	0.60	3	2	3	2	y	0.20	2	8	2	8	y	0.00	0	3	0	3	n	0.27	4	11	4	11	y	0.17	1	5	1	5	n	0.14	1	6	1	6	n	0.20	1	4	1	4	n	0.00	0	6	0	6	n	0.10	1	9	1	9	n	0.00	0	3	0	3	n	0.11	1	8	1	8	n	ENSMUSG00000054874.13	Pcnx3	chr19	protein_coding	pecanex homolog 3
novel_NIR_10164	chr19	5734493	5734577	-	5734496	5734577	A3SS	ENSMUST00000113615.9	novel	0.00	0	11	0	11	n	0.00	0	17	0	17	n	0.13	2	13	2	13	n	0.00	0	18	0	18	n	0.00	0	29	0	29	n	0.00	0	17	0	17	n	0.29	7	17	7	17	y	0.04	1	24	1	24	n	0.00	0	14	0	14	n	0.04	1	22	1	22	n	0.10	2	18	2	18	n	0.09	2	21	2	21	n	ENSMUSG00000054874.13	Pcnx3	chr19	protein_coding	pecanex homolog 3
novel_NIR_10165	chr19	57347559	57348446	-	57313229	57348446	A3SS	ENSMUST00000181921.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000097785.3	B230217O12Rik	chr19	lncRNA	RIKEN cDNA B230217O12 gene
novel_NIR_10166	chr19	5738801	5739505	+	5738858	5739505	A5SS	ENSMUST00000235727.2	novel	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.31	4	9	4	9	y	0.17	1	5	1	5	n	0.15	2	11	2	11	y	0.29	2	5	2	5	y	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.25	2	6	2	6	y	ENSMUSG00000004054.10	Map3k11	chr19	protein_coding	mitogen-activated protein kinase kinase kinase 11
novel_NIR_10167	chr19	5738801	5739505	+	5739294	5739505	5pMXE	ENSMUST00000004156.10	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	0.50	1	1	1	1	n	0.50	2	2	2	2	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000004054.10	Map3k11	chr19	protein_coding	mitogen-activated protein kinase kinase kinase 11
novel_NIR_10168	chr19	5740021	5745189	+	5743049	5745189	5pMXE	ENSMUST00000235661.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000004054.10	Map3k11	chr19	protein_coding	mitogen-activated protein kinase kinase kinase 11
novel_NIR_10169	chr19	57473644	57475518	+	57473644	57473784	3pMXE	ENSMUST00000026072.5	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000025086.14	Trub1	chr19	protein_coding	TruB pseudouridine (psi) synthase family member 1
novel_NIR_10170	chr19	57473644	57475606	+	57473644	57473784	3pMXE	ENSMUST00000026072.5	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.10	1	9	1	9	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.25	1	3	1	3	n	ENSMUSG00000025086.14	Trub1	chr19	protein_coding	TruB pseudouridine (psi) synthase family member 1
novel_NIR_10171	chr19	57473644	57475606	+	57473644	57475697	A3SS	ENSMUST00000026073.14	novel	0.00	0	26	0	26	n	0.00	0	17	0	17	n	0.00	0	19	0	19	n	0.04	1	23	1	23	n	0.16	3	16	3	16	y	0.00	0	9	0	9	n	0.05	1	21	1	21	n	0.00	0	5	0	5	n	0.05	1	20	1	20	n	0.00	0	25	0	25	n	0.09	2	20	2	20	n	0.05	1	19	1	19	n	ENSMUSG00000025086.14	Trub1	chr19	protein_coding	TruB pseudouridine (psi) synthase family member 1
novel_NIR_10172	chr19	57618771	57630852	+	57618771;57627012	57626884;57630852	ES	ENSMUST00000077282.7	novel	0.00	0	11.0	0	8;14	n	0.00	0	8.0	0	8;8	n	0.10	2	18.0	2	14;22	n	0.00	0	19.5	0	15;24	n	0.00	0	15.0	0	8;22	n	0.00	0	16.0	0	15;17	n	0.07	1	13.5	1	12;15	n	0.00	0	9.0	0	6;12	n	0.00	0	8.5	0	7;10	n	0.00	0	19.0	0	13;25	n	0.15	2	11.0	2	8;14	y	0.06	1	17.0	1	12;22	n	ENSMUSG00000054843.10	Atrnl1	chr19	protein_coding	attractin like 1
novel_NIR_10173	chr19	5767224	5769802	-	5767224	5767690	A5SS	ENSMUST00000049295.15	novel	0.00	0	2	0	2	n	0.36	4	7	4	7	y	0.14	1	6	1	6	n	0.17	1	5	1	5	n	0.12	1	7	1	7	n	0.50	1	1	1	1	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	ENSMUSG00000024937.16	Ehbp1l1	chr19	protein_coding	EH domain binding protein 1-like 1
novel_NIR_10174	chr19	5767224	5769802	-	5767224	5769976	A5SS	ENSMUST00000237081.2	novel	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	ENSMUSG00000024937.16	Ehbp1l1	chr19	protein_coding	EH domain binding protein 1-like 1
novel_NIR_10175	chr19	5767224	5769802	-	5767224	5770213	A5SS	ENSMUST00000236215.2	novel	0.00	0	5	0	5	n	0.67	4	2	4	2	y	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.14	1	6	1	6	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.40	2	3	2	3	y	-	-	-	-	-	-	ENSMUSG00000024937.16	Ehbp1l1	chr19	protein_coding	EH domain binding protein 1-like 1
novel_NIR_10176	chr19	5767224	5769802	-	5767224	5770714	A5SS	ENSMUST00000075606.6	novel	0.00	0	4	0	4	n	1.00	4	0	4	0	y	0.50	1	1	1	1	n	0.33	1	2	1	2	n	0.14	1	6	1	6	n	1.00	1	0	1	0	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.25	2	6	2	6	y	0.00	0	3	0	3	n	ENSMUSG00000024937.16	Ehbp1l1	chr19	protein_coding	EH domain binding protein 1-like 1
novel_NIR_10177	chr19	5767224	5770837	-	5767224;5770754	5770714;5770837	ES	ENSMUST00000075606.6	novel	0.00	0	8.0	0	4;12	n	0.00	0	2.0	0	0;4	n	0.00	0	7.5	0	1;14	n	0.00	0	6.0	0	2;10	n	0.00	0	13.0	0	6;20	n	0.00	0	6.0	0	0;12	n	0.00	0	16.5	0	6;27	n	0.00	0	4.5	0	1;8	n	0.00	0	5.5	0	2;9	n	0.21	2	7.5	2	4;11	y	0.00	0	8.0	0	6;10	n	0.00	0	5.0	0	3;7	n	ENSMUSG00000024937.16	Ehbp1l1	chr19	protein_coding	EH domain binding protein 1-like 1
novel_NIR_10178	chr19	5809862	5810009	-	5809781	5810009	A3SS	ENSMUST00000025890.10	novel	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.15	2	11	2	11	y	0.00	0	5	0	5	n	0.00	0	8	0	8	n	ENSMUSG00000024941.10	Scyl1	chr19	protein_coding	SCY1-like 1 (S. cerevisiae)
novel_NIR_10179	chr19	5820380	5820505	-	5820380	5820521	A5SS	ENSMUST00000236568.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024941.10	Scyl1	chr19	protein_coding	SCY1-like 1 (S. cerevisiae)
novel_NIR_10180	chr19	58443026	58443134	-	58443026	58443306	A5SS	ENSMUST00000138530.8	novel	0.62	5	3	5	3	y	1.00	1	0	1	0	n	1.00	13	0	13	0	y	1.00	13	0	13	0	y	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.91	10	1	10	1	y	1.00	4	0	4	0	y	1.00	9	0	9	0	y	1.00	13	0	13	0	y	0.86	6	1	6	1	y	0.80	8	2	8	2	y	ENSMUSG00000025089.16	Gfra1	chr19	protein_coding	glial cell line derived neurotrophic factor family receptor alpha 1
novel_NIR_10181	chr19	58443026	58443134	-	58443026	58443453	A5SS	ENSMUST00000135730.2	novel	1.00	5	0	5	0	y	0.20	1	4	1	4	n	0.87	13	2	13	2	y	1.00	13	0	13	0	y	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.77	10	3	10	3	y	0.44	4	5	4	5	y	1.00	9	0	9	0	y	0.76	13	4	13	4	y	0.86	6	1	6	1	y	0.73	8	3	8	3	y	ENSMUSG00000025089.16	Gfra1	chr19	protein_coding	glial cell line derived neurotrophic factor family receptor alpha 1
novel_NIR_10182	chr19	58443026	58443134	-	58443026	58443630	A5SS	ENSMUST00000026076.14	novel	0.10	5	44	5	44	n	0.03	1	28	1	28	n	0.13	13	86	13	86	n	0.12	13	98	13	98	n	0.02	2	80	2	80	n	0.00	0	55	0	55	n	0.18	10	46	10	46	y	0.09	4	40	4	40	n	0.30	9	21	9	21	y	0.19	13	54	13	54	y	0.24	6	19	6	19	y	0.15	8	47	8	47	y	ENSMUSG00000025089.16	Gfra1	chr19	protein_coding	glial cell line derived neurotrophic factor family receptor alpha 1
novel_NIR_10183	chr19	58443026	58443134	-	58443026	58443679	A5SS	ENSMUST00000152507.8	novel	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	13	0	13	0	y	0.93	13	1	13	1	y	0.40	2	3	2	3	y	-	-	-	-	-	-	1.00	10	0	10	0	y	1.00	4	0	4	0	y	1.00	9	0	9	0	y	1.00	13	0	13	0	y	1.00	6	0	6	0	y	1.00	8	0	8	0	y	ENSMUSG00000025089.16	Gfra1	chr19	protein_coding	glial cell line derived neurotrophic factor family receptor alpha 1
novel_NIR_10184	chr19	58443026	58443134	-	58443026	58443893	A5SS	ENSMUST00000131877.2	novel	0.21	5	19	5	19	y	0.07	1	13	1	13	n	0.23	13	43	13	43	y	0.31	13	29	13	29	y	0.04	2	44	2	44	n	0.00	0	20	0	20	n	0.26	10	29	10	29	y	0.09	4	42	4	42	n	0.64	9	5	9	5	y	0.52	13	12	13	12	y	0.43	6	8	6	8	y	0.31	8	18	8	18	y	ENSMUSG00000025089.16	Gfra1	chr19	protein_coding	glial cell line derived neurotrophic factor family receptor alpha 1
novel_NIR_10185	chr19	58443026	58443683	-	58443026	58443306	5pMXE	ENSMUST00000138530.8	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	7	0	7	0	y	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000025089.16	Gfra1	chr19	protein_coding	glial cell line derived neurotrophic factor family receptor alpha 1
novel_NIR_10186	chr19	58443026	58443683	-	58443026	58443453	5pMXE	ENSMUST00000135730.2	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	0.78	7	2	7	2	y	1.00	2	0	2	0	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.17	1	5	1	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000025089.16	Gfra1	chr19	protein_coding	glial cell line derived neurotrophic factor family receptor alpha 1
novel_NIR_10187	chr19	58443026	58443683	-	58443026	58443679	A5SS	ENSMUST00000152507.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	7	0	7	0	y	0.67	2	1	2	1	y	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025089.16	Gfra1	chr19	protein_coding	glial cell line derived neurotrophic factor family receptor alpha 1
novel_NIR_10188	chr19	5875599	5876225	-	5875599	5876229	A5SS	ENSMUST00000232969.2	novel	0.50	1	1	1	1	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	4	2	4	2	y	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.83	10	2	10	2	y	ENSMUSG00000092274.4	Neat1	chr19	lncRNA	nuclear paraspeckle assembly transcript 1 (non-protein coding)
novel_NIR_10189	chr19	5876329	5877437	-	5876329	5877688	A5SS	ENSMUST00000232969.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.60	3	2	3	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000092274.4	Neat1	chr19	lncRNA	nuclear paraspeckle assembly transcript 1 (non-protein coding)
novel_NIR_10190	chr19	5876329	5877533	-	5876329	5877688	A5SS	ENSMUST00000232969.2	novel	0.50	1	1	1	1	n	0.80	4	1	4	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000092274.4	Neat1	chr19	lncRNA	nuclear paraspeckle assembly transcript 1 (non-protein coding)
novel_NIR_10191	chr19	5894782	5894953	-	5894786	5894953	A3SS	ENSMUST00000174287.2	novel	0.00	0	15	0	15	n	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	42	0	42	n	0.00	0	12	0	12	n	0.16	3	16	3	16	y	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	ENSMUSG00000092274.4	Neat1	chr19	lncRNA	nuclear paraspeckle assembly transcript 1 (non-protein coding)
novel_NIR_10192	chr19	5923361	5924738	-	5923364	5924738	A3SS	ENSMUST00000025728.13	novel	0.00	0	28	0	28	n	0.16	3	16	3	16	y	0.00	0	40	0	40	n	0.00	0	25	0	25	n	0.00	0	31	0	31	n	0.00	0	28	0	28	n	0.00	0	20	0	20	n	0.00	0	18	0	18	n	0.00	0	14	0	14	n	0.00	0	27	0	27	n	0.00	0	28	0	28	n	0.00	0	22	0	22	n	ENSMUSG00000024816.13	Frmd8	chr19	protein_coding	FERM domain containing 8
novel_NIR_10193	chr19	59275850	59293590	-	59290140	59293590	3pMXE	ENSMUST00000099274.4	novel	0.25	3	9	3	9	y	0.00	0	14	0	14	n	0.00	0	34	0	34	n	0.08	1	12	1	12	n	0.08	2	22	2	22	n	0.00	0	18	0	18	n	0.00	0	20	0	20	n	0.00	0	23	0	23	n	0.07	2	25	2	25	n	0.00	0	20	0	20	n	0.00	0	7	0	7	n	0.00	0	24	0	24	n	ENSMUSG00000074746.4	Pdzd8	chr19	protein_coding	PDZ domain containing 8
novel_NIR_10194	chr19	5957189	5961939	-	5957189	5963010	A5SS	ENSMUST00000154365.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024826.16	Dpf2	chr19	protein_coding	D4, zinc and double PHD fingers family 2
novel_NIR_10195	chr19	59927685	59931080	-	59925862	59931080	A3SS	ENSMUST00000051996.13	novel	0.67	2	1	2	1	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.12	1	7	1	7	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	ENSMUSG00000040022.15	Rab11fip2	chr19	protein_coding	RAB11 family interacting protein 2 (class I)
novel_NIR_10196	chr19	6000516	6001202	-	6000516	6001170	A5SS	ENSMUST00000025752.15	novel	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.14	2	12	2	12	n	0.15	2	11	2	11	y	0.00	0	28	0	28	n	0.17	1	5	1	5	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	15	0	15	n	0.00	0	18	0	18	n	0.00	0	8	0	8	n	0.00	0	19	0	19	n	ENSMUSG00000024833.16	Pola2	chr19	protein_coding	polymerase (DNA directed), alpha 2
novel_NIR_10197	chr19	60209736	60211322	-	60209736	60213297	A5SS	ENSMUST00000237339.2	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.50	2	2	2	2	y	-	-	-	-	-	-	ENSMUSG00000057858.9	Fam204a	chr19	protein_coding	family with sequence similarity 204, member A
novel_NIR_10198	chr19	60209736	60211322	-	60209736	60214664	A5SS	ENSMUST00000065286.2	novel	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.50	2	2	2	2	y	0.00	0	7	0	7	n	ENSMUSG00000057858.9	Fam204a	chr19	protein_coding	family with sequence similarity 204, member A
novel_NIR_10199	chr19	60209736	60211322	-	60209736	60215076	A5SS	ENSMUST00000238054.2	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	14	0	14	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.06	1	15	1	15	n	0.29	2	5	2	5	y	0.00	0	9	0	9	n	ENSMUSG00000057858.9	Fam204a	chr19	protein_coding	family with sequence similarity 204, member A
novel_NIR_10200	chr19	60209736	60211894	-	60209736	60213297	A5SS	ENSMUST00000237339.2	novel	0.00	0	2	0	2	n	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.33	1	2	1	2	n	-	-	-	-	-	-	ENSMUSG00000057858.9	Fam204a	chr19	protein_coding	family with sequence similarity 204, member A
novel_NIR_10201	chr19	60209736	60211894	-	60209736	60214664	A5SS	ENSMUST00000065286.2	novel	0.00	0	6	0	6	n	0.40	2	3	2	3	y	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.14	1	6	1	6	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.33	1	2	1	2	n	0.00	0	7	0	7	n	ENSMUSG00000057858.9	Fam204a	chr19	protein_coding	family with sequence similarity 204, member A
novel_NIR_10202	chr19	60209736	60211894	-	60209736	60215076	A5SS	ENSMUST00000238054.2	novel	0.00	0	3	0	3	n	0.67	2	1	2	1	y	0.00	0	14	0	14	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.06	1	15	1	15	n	0.17	1	5	1	5	n	0.00	0	9	0	9	n	ENSMUSG00000057858.9	Fam204a	chr19	protein_coding	family with sequence similarity 204, member A
novel_NIR_10203	chr19	60209736	60214742	-	60201194	60214742	A3SS	ENSMUST00000235995.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	7	0	7	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	6	0	6	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	ENSMUSG00000057858.9	Fam204a	chr19	protein_coding	family with sequence similarity 204, member A
novel_NIR_10204	chr19	60209736	60214742	-	60209736	60213297	A5SS&ES	ENSMUST00000237339.2	novel	0.00	0	2	0	2	n	0.40	2	3	2	3	y	1.00	7	0	7	0	y	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.75	6	2	6	2	y	0.50	2	2	2	2	y	1.00	3	0	3	0	y	ENSMUSG00000057858.9	Fam204a	chr19	protein_coding	family with sequence similarity 204, member A
novel_NIR_10205	chr19	60209736	60214742	-	60209736	60214664	A5SS	ENSMUST00000065286.2	novel	0.00	0	6	0	6	n	0.40	2	3	2	3	y	0.54	7	6	7	6	y	0.25	1	3	1	3	n	0.00	0	8	0	8	n	1.00	1	0	1	0	n	0.25	2	6	2	6	y	-	-	-	-	-	-	0.33	2	4	2	4	y	0.75	6	2	6	2	y	0.50	2	2	2	2	y	0.30	3	7	3	7	y	ENSMUSG00000057858.9	Fam204a	chr19	protein_coding	family with sequence similarity 204, member A
novel_NIR_10206	chr19	60209736	60214742	-	60209736	60215076	A5SS	ENSMUST00000238054.2	novel	0.00	0	3	0	3	n	0.67	2	1	2	1	y	0.33	7	14	7	14	y	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.29	6	15	6	15	y	0.29	2	5	2	5	y	0.25	3	9	3	9	y	ENSMUSG00000057858.9	Fam204a	chr19	protein_coding	family with sequence similarity 204, member A
novel_NIR_10207	chr19	6065842	6066079	+	6065842	6066347	A3SS	ENSMUST00000180505.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	ENSMUSG00000097404.3	Gm10814	chr19	lncRNA	predicted gene 10814
novel_NIR_10208	chr19	6097052	6097947	+	6097360	6097947	5pMXE	ENSMUST00000134667.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.60	3	2	3	2	y	0.60	3	2	3	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000024807.19	Syvn1	chr19	protein_coding	synovial apoptosis inhibitor 1, synoviolin
novel_NIR_10209	chr19	61105726	61105857	-	61105726	61106063	A5SS	ENSMUST00000127117.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000074733.15	Zfp950	chr19	protein_coding	zinc finger protein 950
novel_NIR_10210	chr19	61105726	61105857	-	61105726	61115445	A5SS	ENSMUST00000205854.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.20	1	4	1	4	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000074733.15	Zfp950	chr19	protein_coding	zinc finger protein 950
novel_NIR_10211	chr19	61105983	61106063	-	61105726	61106063	A3SS	ENSMUST00000127117.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000074733.15	Zfp950	chr19	protein_coding	zinc finger protein 950
novel_NIR_10212	chr19	61106785	61108841	-	61106785	61108757	A5SS	ENSMUST00000205712.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.50	2	2	2	2	y	ENSMUSG00000074733.15	Zfp950	chr19	protein_coding	zinc finger protein 950
novel_NIR_10213	chr19	61106785	61115445	-	61046714	61115445	A3SS	ENSMUST00000122927.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000074733.15	Zfp950	chr19	protein_coding	zinc finger protein 950
novel_NIR_10214	chr19	61106785	61115445	-	61105726	61115445	A3SS	ENSMUST00000205854.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000074733.15	Zfp950	chr19	protein_coding	zinc finger protein 950
novel_NIR_10215	chr19	61106785	61115445	-	61106785;61108890	61108757;61115445	ES	ENSMUST00000205712.2	novel	0.18	1	4.5	1	0;9	n	0.00	0	3.0	0	0;6	n	0.00	0	2.0	0	2;2	n	0.40	1	1.5	1	0;3	n	0.35	3	5.5	3	2;9	y	0.00	0	2.0	0	1;3	n	0.00	0	2.0	0	0;4	n	0.00	0	2.0	0	0;4	n	0.22	1	3.5	1	1;6	n	0.00	0	3.5	0	2;5	n	0.00	0	7.5	0	4;11	n	0.00	0	6.0	0	2;10	n	ENSMUSG00000074733.15	Zfp950	chr19	protein_coding	zinc finger protein 950
novel_NIR_10216	chr19	61106785	61115445	-	61106788	61115445	A3SS	ENSMUST00000127290.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000074733.15	Zfp950	chr19	protein_coding	zinc finger protein 950
novel_NIR_10217	chr19	61106785	61115445	-	61108890	61115445	A3SS	ENSMUST00000180544.3	novel	0.10	1	9	1	9	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.25	3	9	3	9	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	ENSMUSG00000074733.15	Zfp950	chr19	protein_coding	zinc finger protein 950
novel_NIR_10218	chr19	61106788	61108757	-	61106785	61108757	A3SS	ENSMUST00000205712.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.60	3	2	3	2	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000074733.15	Zfp950	chr19	protein_coding	zinc finger protein 950
novel_NIR_10219	chr19	61106788	61108757	-	61106788	61115445	A5SS	ENSMUST00000127290.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.60	3	2	3	2	y	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000074733.15	Zfp950	chr19	protein_coding	zinc finger protein 950
novel_NIR_10220	chr19	61106788	61108841	-	61106788	61115445	A5SS	ENSMUST00000127290.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.33	2	4	2	4	y	ENSMUSG00000074733.15	Zfp950	chr19	protein_coding	zinc finger protein 950
novel_NIR_10221	chr19	6114228	6115217	-	6114228	6116998	A5SS	ENSMUST00000161718.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.40	2	3	2	3	y	ENSMUSG00000024799.17	Tm7sf2	chr19	protein_coding	transmembrane 7 superfamily member 2
novel_NIR_10222	chr19	6114228	6116268	-	6114228	6116998	A5SS	ENSMUST00000161718.8	novel	1.00	11	0	11	0	n	0.83	5	1	5	1	y	1.00	3	0	3	0	n	0.88	7	1	7	1	n	1.00	11	0	11	0	n	1.00	13	0	13	0	y	0.89	8	1	8	1	n	1.00	1	0	1	0	n	1.00	7	0	7	0	y	1.00	15	0	15	0	n	0.91	10	1	10	1	n	0.57	4	3	4	3	n	ENSMUSG00000024799.17	Tm7sf2	chr19	protein_coding	transmembrane 7 superfamily member 2
novel_NIR_10223	chr19	6114228;6116672	6116268;6116998	-	6114228	6116998	cassetteExon	ENSMUST00000161718.8	novel	1.00	9.5	0	11;8	0	y	0.71	2.5	1	5;0	1	n	1.00	3.0	0	3;3	0	y	0.88	7.5	1	7;8	1	y	1.00	8.5	0	11;6	0	y	1.00	6.5	0	13;0	0	n	0.87	6.5	1	8;5	1	y	1.00	3.0	0	1;5	0	n	1.00	3.5	0	7;0	0	n	1.00	8.5	0	15;2	0	y	0.85	5.5	1	10;1	1	n	0.62	5.0	3	4;6	3	y	ENSMUSG00000024799.17	Tm7sf2	chr19	protein_coding	transmembrane 7 superfamily member 2
novel_NIR_10224	chr19	6114228;6116672	6116370;6116998	-	6114228	6116998	cassetteExon	ENSMUST00000161718.8	novel	1.00	4.0	0	0;8	0	n	0.00	0.0	1	0;0	1	n	1.00	1.5	0	0;3	0	n	0.80	4.0	1	0;8	1	n	1.00	3.0	0	0;6	0	n	-	-	-	-	-	-	0.71	2.5	1	0;5	1	n	1.00	2.5	0	0;5	0	n	-	-	-	-	-	-	1.00	1.0	0	0;2	0	n	0.33	0.5	1	0;1	1	n	0.65	5.5	3	5;6	3	y	ENSMUSG00000024799.17	Tm7sf2	chr19	protein_coding	transmembrane 7 superfamily member 2
novel_NIR_10225	chr19	6116672	6116998	-	6116593	6116998	A3SS	ENSMUST00000161528.2	novel	0.57	8	6	8	6	y	0.00	0	5	0	5	n	0.43	3	4	3	4	y	0.73	8	3	8	3	y	0.38	6	10	6	10	y	0.00	0	3	0	3	n	0.38	5	8	5	8	y	0.83	5	1	5	1	y	0.00	0	9	0	9	n	0.13	2	13	2	13	n	0.09	1	10	1	10	n	0.32	6	13	6	13	y	ENSMUSG00000024799.17	Tm7sf2	chr19	protein_coding	transmembrane 7 superfamily member 2
novel_NIR_10226	chr19	6117349	6117741	-	6117349	6117808	A5SS	ENSMUST00000162549.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.75	6	2	6	2	y	0.40	2	3	2	3	y	0.78	7	2	7	2	y	-	-	-	-	-	-	0.73	8	3	8	3	y	0.50	1	1	1	1	n	-	-	-	-	-	-	0.25	3	9	3	9	y	-	-	-	-	-	-	0.67	6	3	6	3	y	ENSMUSG00000024799.17	Tm7sf2	chr19	protein_coding	transmembrane 7 superfamily member 2
novel_NIR_10227	chr19	61214493	61214639	-	61214493	61214653	A5SS	ENSMUST00000076046.7	novel	0.50	4	4	4	4	y	0.00	0	9	0	9	n	0.27	3	8	3	8	y	0.00	0	2	0	2	n	0.17	2	10	2	10	y	0.00	0	6	0	6	n	0.17	1	5	1	5	n	0.00	0	6	0	6	n	0.38	3	5	3	5	y	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.25	2	6	2	6	y	ENSMUSG00000059326.8	Csf2ra	chr19	protein_coding	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)
novel_NIR_10228	chr19	6127231	6130658	+	6130346	6130658	5pMXE	ENSMUST00000149347.8	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000047733.11	Tmem262	chr19	protein_coding	transmembrane protein 262
novel_NIR_10229	chr19	6131580	6131877	-	6127508	6131877	A3SS	ENSMUST00000162374.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.67	4	2	4	2	y	ENSMUSG00000100621.3	Gm28374	chr19	protein_coding	predicted gene 28374
novel_NIR_10230	chr19	6132808	6133848	-	6132808	6134382	A5SS	ENSMUST00000160448.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000024792.10	Zfpl1	chr19	protein_coding	zinc finger like protein 1
novel_NIR_10231	chr19	6177666	6178079	-	6173980	6178079	A3SS	ENSMUST00000138931.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000024787.15	Snx15	chr19	protein_coding	sorting nexin 15
novel_NIR_10232	chr19	6214583	6215134	+	6214583	6215394	A3SS	ENSMUST00000132750.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039699.15	Batf2	chr19	protein_coding	basic leucine zipper transcription factor, ATF-like 2
novel_NIR_10233	chr19	6214583	6215134	+	6214583	6216498	A3SS	ENSMUST00000045042.8	novel	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039699.15	Batf2	chr19	protein_coding	basic leucine zipper transcription factor, ATF-like 2
novel_NIR_10234	chr19	6309015	6310025	+	6309015	6309174	3pMXE	ENSMUST00000237387.2	novel	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000024773.16	Atg2a	chr19	protein_coding	autophagy related 2A
novel_NIR_10235	chr19	6366281	6366374	+	6366281	6366371	A3SS	ENSMUST00000025681.8	novel	0.36	5	9	5	9	y	0.00	0	10	0	10	n	0.21	3	11	3	11	y	0.33	3	6	3	6	y	0.21	6	23	6	23	y	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.09	1	10	1	10	n	0.10	2	18	2	18	n	0.20	1	4	1	4	n	0.15	3	17	3	17	y	ENSMUSG00000024769.8	Cdc42bpg	chr19	protein_coding	CDC42 binding protein kinase gamma (DMPK-like)
novel_NIR_10236	chr19	6372708	6372826	+	6372708	6372823	A3SS	ENSMUST00000025681.8	novel	0.31	8	18	8	18	y	0.42	10	14	10	14	y	0.05	1	20	1	20	n	0.30	3	7	3	7	y	0.24	8	25	8	25	y	0.23	5	17	5	17	y	0.27	9	24	9	24	y	0.50	8	8	8	8	y	0.38	10	16	10	16	y	0.38	12	20	12	20	y	0.29	9	22	9	22	y	0.42	10	14	10	14	y	ENSMUSG00000024769.8	Cdc42bpg	chr19	protein_coding	CDC42 binding protein kinase gamma (DMPK-like)
novel_NIR_10237	chr19	6424638	6425688	+	6424638	6424850	A3SS&ES	ENSMUST00000125516.8	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000024949.18	Sf1	chr19	protein_coding	splicing factor 1
novel_NIR_10238	chr19	6458984	6459221	+	6458984	6463115	A3SS	ENSMUST00000113476.8	novel	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	21	0	21	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.18	3	14	3	14	y	0.00	0	13	0	13	n	0.00	0	4	0	4	n	ENSMUSG00000032946.17	Rasgrp2	chr19	protein_coding	RAS, guanyl releasing protein 2
novel_NIR_10239	chr19	6458984	6461148	+	6458984	6463115	A3SS	ENSMUST00000113476.8	novel	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.06	1	17	1	17	n	0.09	1	10	1	10	n	0.29	2	5	2	5	y	0.00	0	21	0	21	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.33	2	4	2	4	y	ENSMUSG00000032946.17	Rasgrp2	chr19	protein_coding	RAS, guanyl releasing protein 2
novel_NIR_10240	chr19	6814790	6814948	-	6814845	6814948	A3SS	ENSMUST00000239527.1	novel	0.00	0	20	0	20	n	0.00	0	6	0	6	n	0.04	1	26	1	26	n	0.20	2	8	2	8	y	0.00	0	21	0	21	n	0.00	0	11	0	11	n	0.00	0	20	0	20	n	0.00	0	12	0	12	n	0.00	0	18	0	18	n	0.05	1	20	1	20	n	0.07	1	14	1	14	n	0.05	1	20	1	20	n	ENSMUSG00000118668.1	Rps6ka4	chr19	protein_coding	--
novel_NIR_10241	chr19	6891316;6891660	6891466;6897431	-	6891316	6897431	cassetteExon	ENSMUST00000172975.3	novel	1.00	2.0	0	3;1	0	n	1.00	3.5	0	4;3	0	y	1.00	1.5	0	2;1	0	n	1.00	1.0	0	0;2	0	n	1.00	1.0	0	0;2	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	0.5	0	0;1	0	n	1.00	5.0	0	9;1	0	n	1.00	4.0	0	5;3	0	y	1.00	4.0	0	4;4	0	y	ENSMUSG00000024955.16	Esrra	chr19	protein_coding	estrogen related receptor, alpha
novel_NIR_10242	chr19	6891563	6891644	-	6891563	6898990	A5SS	ENSMUST00000173635.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000024955.16	Esrra	chr19	protein_coding	estrogen related receptor, alpha
novel_NIR_10243	chr19	6891660	6897431	-	6891316	6897431	A3SS	ENSMUST00000172975.3	novel	1.00	1	0	1	0	n	1.00	3	0	3	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	n	1.00	4	0	4	0	n	ENSMUSG00000024955.16	Esrra	chr19	protein_coding	estrogen related receptor, alpha
novel_NIR_10244	chr19	6891660	6897431	-	6891660	6898990	A5SS	ENSMUST00000173308.2	novel	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.67	2	1	2	1	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.33	1	2	1	2	n	1.00	3	0	3	0	y	1.00	4	0	4	0	y	ENSMUSG00000024955.16	Esrra	chr19	protein_coding	estrogen related receptor, alpha
novel_NIR_10245	chr19	6897767	6898772	-	6897767	6898383	5pMXE	ENSMUST00000172975.3	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	0.29	2	5	2	5	y	1.00	1	0	1	0	n	ENSMUSG00000024955.16	Esrra	chr19	protein_coding	estrogen related receptor, alpha
novel_NIR_10246	chr19	6916778	6917011	-	6916778	6917851	A5SS	ENSMUST00000099776.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024958.14	Gpr137	chr19	protein_coding	G protein-coupled receptor 137
novel_NIR_10247	chr19	6917769	6918460	-	6917769;6918317	6917851;6918460	ES	ENSMUST00000237934.2	novel	0.24	2	6.5	2	13;0	y	0.00	0	6.0	0	12;0	n	0.00	0	12.0	0	24;0	n	0.00	0	5.5	0	11;0	n	0.09	1	10.5	1	21;0	n	0.00	0	6.0	0	12;0	n	0.00	0	11.0	0	20;2	n	0.00	0	10.0	0	20;0	n	0.00	0	4.5	0	9;0	n	0.00	0	5.5	0	11;0	n	0.14	2	12.0	2	24;0	n	0.00	0	4.5	0	9;0	n	ENSMUSG00000024958.14	Gpr137	chr19	protein_coding	G protein-coupled receptor 137
novel_NIR_10248	chr19	6917769	6918460	-	6918317	6918460	A3SS&ES	ENSMUST00000099774.10	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000024958.14	Gpr137	chr19	protein_coding	G protein-coupled receptor 137
novel_NIR_10249	chr19	6917769	6919365	-	6917769	6917851	5pMXE	ENSMUST00000166115.9	novel	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.00	0	24	0	24	n	0.00	0	11	0	11	n	0.00	0	21	0	21	n	0.00	0	12	0	12	n	0.00	0	20	0	20	n	0.00	0	20	0	20	n	0.18	2	9	2	9	y	0.00	0	11	0	11	n	0.00	0	24	0	24	n	0.00	0	9	0	9	n	ENSMUSG00000024958.14	Gpr137	chr19	protein_coding	G protein-coupled receptor 137
novel_NIR_10250	chr19	6917769	6919365	-	6917850	6919365	A3SS	ENSMUST00000236348.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000024958.14	Gpr137	chr19	protein_coding	G protein-coupled receptor 137
novel_NIR_10251	chr19	6917850	6919294	-	6917850	6918460	5pMXE	ENSMUST00000235363.2	novel	0.00	0	21	0	21	n	0.23	5	17	5	17	y	0.00	0	35	0	35	n	0.04	1	23	1	23	n	0.00	0	26	0	26	n	0.00	0	35	0	35	n	0.00	0	45	0	45	n	0.00	0	15	0	15	n	0.00	0	14	0	14	n	0.00	0	30	0	30	n	0.00	0	29	0	29	n	0.09	2	20	2	20	n	ENSMUSG00000024958.14	Gpr137	chr19	protein_coding	G protein-coupled receptor 137
novel_NIR_10252	chr19	6917850	6919294	-	6917850	6919292	A5SS	ENSMUST00000099782.10	novel	0.00	0	3	0	3	n	0.56	5	4	5	4	y	0.00	0	1	0	1	n	0.12	1	7	1	7	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.29	2	5	2	5	y	ENSMUSG00000024958.14	Gpr137	chr19	protein_coding	G protein-coupled receptor 137
novel_NIR_10253	chr19	6917850	6919294	-	6917850	6919365	A5SS	ENSMUST00000236348.2	novel	-	-	-	-	-	-	0.83	5	1	5	1	y	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	ENSMUSG00000024958.14	Gpr137	chr19	protein_coding	G protein-coupled receptor 137
novel_NIR_10254	chr19	6942765	6943054	-	6942765;6942952	6942875;6943054	ES	ENSMUST00000237446.2	novel	0.00	0	7.0	0	0;14	n	0.00	0	1.5	0	0;3	n	0.00	0	6.0	0	0;12	n	0.00	0	12.5	0	0;25	n	0.00	0	18.5	0	1;36	n	0.00	0	3.5	0	0;7	n	0.00	0	10.0	0	2;18	n	0.00	0	8.0	0	0;16	n	0.00	0	5.5	0	0;11	n	0.00	0	9.0	0	0;18	n	0.15	2	11.5	2	1;22	y	0.00	0	10.0	0	0;20	n	ENSMUSG00000024960.10	Plcb3	chr19	protein_coding	phospholipase C, beta 3
novel_NIR_10255	chr19	6944077	6952087	-	6944077	6946915	5pMXE	ENSMUST00000025912.10	novel	0.00	0	16	0	16	n	0.00	0	3	0	3	n	0.06	1	17	1	17	n	0.00	0	13	0	13	n	0.17	3	15	3	15	y	0.12	1	7	1	7	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.00	0	17	0	17	n	ENSMUSG00000024960.10	Plcb3	chr19	protein_coding	phospholipase C, beta 3
novel_NIR_10256	chr19	6944077	6952087	-	6944077	6953773	A5SS	ENSMUST00000235352.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024960.10	Plcb3	chr19	protein_coding	phospholipase C, beta 3
novel_NIR_10257	chr19	6956509	6957303	-	6956509	6956682	5pMXE	ENSMUST00000237119.2	novel	0.60	3	2	3	2	y	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	1.00	7	0	7	0	y	0.00	0	5	0	5	n	0.00	0	4	0	4	n	ENSMUSG00000056629.17	Fkbp2	chr19	protein_coding	FK506 binding protein 2
novel_NIR_10258	chr19	6956509	6957379	-	6956509	6956682	5pMXE	ENSMUST00000237119.2	novel	0.50	2	2	2	2	y	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.12	1	7	1	7	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.20	1	4	1	4	n	ENSMUSG00000056629.17	Fkbp2	chr19	protein_coding	FK506 binding protein 2
novel_NIR_10259	chr19	6965643	6967049	-	6965643;6966952	6966791;6967049	ES	ENSMUST00000179118.2	novel	0.00	0	38.0	0	70;6	n	0.04	2	44.5	2	81;8	n	0.08	2	22.5	2	38;7	n	0.08	3	33.5	3	61;6	n	0.00	0	42.0	0	69;15	n	0.10	3	27.0	3	46;8	n	0.04	2	52.0	2	89;15	n	0.00	0	26.5	0	40;13	n	0.17	4	19.5	4	34;5	y	0.00	0	49.5	0	85;14	n	0.03	1	37.5	1	63;12	n	0.00	0	36.0	0	63;9	n	ENSMUSG00000024963.13	Dnajc4	chr19	protein_coding	DnaJ heat shock protein family (Hsp40) member C4
novel_NIR_10260	chr19	6968179	6969917	-	6968179;6969689	6969527;6969917	ES	ENSMUST00000235444.2	novel	0.00	0	15.0	0	30;0	n	0.00	0	13.5	0	26;1	n	0.09	2	19.5	2	39;0	n	0.00	0	11.5	0	23;0	n	0.10	2	18.0	2	36;0	n	0.00	0	8.0	0	16;0	n	0.00	0	21.5	0	43;0	n	0.24	2	6.5	2	12;1	y	0.18	3	14.0	3	28;0	y	0.00	0	13.0	0	26;0	n	0.00	0	12.0	0	24;0	n	0.00	0	12.0	0	24;0	n	ENSMUSG00000024963.13	Dnajc4	chr19	protein_coding	DnaJ heat shock protein family (Hsp40) member C4
novel_NIR_10261	chr19	6969310	6969527	-	6968199	6969527	A3SS	ENSMUST00000235481.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000024963.13	Dnajc4	chr19	protein_coding	DnaJ heat shock protein family (Hsp40) member C4
novel_NIR_10262	chr19	6969310	6969917	-	6969689	6969917	A3SS&ES	ENSMUST00000235444.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000024963.13	Dnajc4	chr19	protein_coding	DnaJ heat shock protein family (Hsp40) member C4
novel_NIR_10263	chr19	6969640	6969917	-	6969689	6969917	A3SS	ENSMUST00000235444.2	novel	1.00	8	0	8	0	y	0.86	6	1	6	1	y	-	-	-	-	-	-	1.00	8	0	8	0	y	1.00	11	0	11	0	y	1.00	1	0	1	0	n	1.00	9	0	9	0	y	0.80	4	1	4	1	y	1.00	1	0	1	0	n	1.00	12	0	12	0	y	1.00	3	0	3	0	y	1.00	5	0	5	0	y	ENSMUSG00000024963.13	Dnajc4	chr19	protein_coding	DnaJ heat shock protein family (Hsp40) member C4
novel_NIR_10264	chr19	6975933	6976023	+	6975933	6976026	A3SS	ENSMUST00000237234.2	novel	0.05	1	18	1	18	n	0.00	0	27	0	27	n	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	24	0	24	n	0.00	0	11	0	11	n	0.00	0	32	0	32	n	0.00	0	11	0	11	n	0.00	0	21	0	21	n	0.00	0	25	0	25	n	0.15	2	11	2	11	y	0.00	0	14	0	14	n	ENSMUSG00000047656.10	Trpt1	chr19	protein_coding	tRNA phosphotransferase 1
novel_NIR_10265	chr19	6975933	6976074	+	6975933	6976026	A3SS	ENSMUST00000237234.2	novel	0.10	2	18	2	18	n	0.00	0	27	0	27	n	0.07	1	14	1	14	n	0.08	1	12	1	12	n	0.11	3	24	3	24	n	0.00	0	11	0	11	n	0.14	5	32	5	32	n	0.15	2	11	2	11	y	0.00	0	21	0	21	n	0.00	0	25	0	25	n	0.31	5	11	5	11	y	0.22	4	14	4	14	y	ENSMUSG00000047656.10	Trpt1	chr19	protein_coding	tRNA phosphotransferase 1
novel_NIR_10266	chr19	6996210	6996646	-	6996207	6996646	A3SS	ENSMUST00000040772.9	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	10	0	10	0	y	0.00	0	5	0	5	n	0.25	2	6	2	6	y	0.67	6	3	6	3	y	0.50	2	2	2	2	y	0.50	1	1	1	1	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	ENSMUSG00000024965.10	Fermt3	chr19	protein_coding	fermitin family member 3
novel_NIR_10267	chr19	7034550	7037609	+	7034550	7042833	A3SS	ENSMUST00000040261.7	novel	0.02	3	152	3	152	n	0.00	0	96	0	96	n	0.00	0	17	0	17	n	0.01	1	102	1	102	n	0.01	2	136	2	136	n	0.17	2	10	2	10	y	0.01	2	144	2	144	n	0.11	3	24	3	24	n	0.04	4	101	4	101	n	0.02	3	195	3	195	n	0.01	1	140	1	140	n	0.01	2	155	2	155	n	ENSMUSG00000036278.8	Macrod1	chr19	protein_coding	mono-ADP ribosylhydrolase 1
novel_NIR_10268	chr19	7192849	7194770	-	7192849	7193846	A5SS&ES	ENSMUST00000237087.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	108	0	108	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035885.6	Cox8a	chr19	protein_coding	cytochrome c oxidase subunit 8A
novel_NIR_10269	chr19	7255451	7258485	-	7255451	7256476	A5SS&ES	ENSMUST00000167767.8	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	2	0	2	n	ENSMUSG00000024969.16	Mark2	chr19	protein_coding	MAP/microtubule affinity regulating kinase 2
novel_NIR_10270	chr19	7255451	7258485	-	7255451	7257351	A5SS&ES	ENSMUST00000032557.15	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	15	0	15	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	3	3	3	3	y	0.00	0	10	0	10	n	ENSMUSG00000024969.16	Mark2	chr19	protein_coding	MAP/microtubule affinity regulating kinase 2
novel_NIR_10271	chr19	7255451	7258485	-	7255451	7258363	A5SS	ENSMUST00000164205.8	novel	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	28	0	28	n	0.00	0	27	0	27	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.00	0	17	0	17	n	0.00	0	16	0	16	n	0.00	0	16	0	16	n	0.00	0	27	0	27	n	0.16	3	16	3	16	y	0.00	0	19	0	19	n	ENSMUSG00000024969.16	Mark2	chr19	protein_coding	MAP/microtubule affinity regulating kinase 2
novel_NIR_10272	chr19	7264431	7264519	-	7264431	7264695	A5SS	ENSMUST00000032557.15	novel	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	17	0	17	n	0.17	2	10	2	10	y	0.00	0	21	0	21	n	0.00	0	15	0	15	n	0.00	0	23	0	23	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.00	0	23	0	23	n	0.00	0	4	0	4	n	0.00	0	17	0	17	n	ENSMUSG00000024969.16	Mark2	chr19	protein_coding	MAP/microtubule affinity regulating kinase 2
novel_NIR_10273	chr19	7335814	7351022	-	7331620	7351022	A3SS	ENSMUST00000237653.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000024970.6	Spindoc	chr19	protein_coding	spindlin interactor and repressor of chromatin binding
novel_NIR_10274	chr19	7335814	7351022	-	7335852	7351022	A3SS	ENSMUST00000025924.4	novel	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.15	3	17	3	17	y	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.10	1	9	1	9	n	0.12	1	7	1	7	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.14	1	6	1	6	n	0.20	1	4	1	4	n	0.00	0	12	0	12	n	ENSMUSG00000024970.6	Spindoc	chr19	protein_coding	spindlin interactor and repressor of chromatin binding
novel_NIR_10275	chr19	7412419	7460304	-	7435788	7460304	A3SS&ES	ENSMUST00000088171.12	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024758.16	Rtn3	chr19	protein_coding	reticulon 3
novel_NIR_10276	chr19	7412419	7460304	-	7445232	7460304	A3SS&ES	ENSMUST00000065304.13	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000024758.16	Rtn3	chr19	protein_coding	reticulon 3
novel_NIR_10277	chr19	7412503	7413531	-	7412503	7433665	A5SS	ENSMUST00000088171.12	novel	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	ENSMUSG00000024758.16	Rtn3	chr19	protein_coding	reticulon 3
novel_NIR_10278	chr19	7412503	7413531	-	7412503	7445176	A5SS	ENSMUST00000025667.14	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000024758.16	Rtn3	chr19	protein_coding	reticulon 3
novel_NIR_10279	chr19	8040781	8041812	-	8040855	8041812	A3SS	ENSMUST00000065651.5	novel	0.00	0	13	0	13	n	0.05	1	21	1	21	n	-	-	-	-	-	-	0.00	0	14	0	14	n	0.00	0	9	0	9	n	1.00	1	0	1	0	n	0.17	2	10	2	10	y	0.00	0	1	0	1	n	0.00	0	19	0	19	n	0.00	0	38	0	38	n	0.00	0	23	0	23	n	0.00	0	17	0	17	n	ENSMUSG00000063590.4	Slc22a28	chr19	protein_coding	solute carrier family 22, member 28
novel_NIR_10280	chr19	8041920	8042083	-	8041920	8048361	A5SS	ENSMUST00000065651.5	novel	0.00	0	6	0	6	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	13	0	13	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	15	0	15	n	-	-	-	-	-	-	0.00	0	10	0	10	n	0.00	0	39	0	39	n	0.19	3	13	3	13	y	0.00	0	16	0	16	n	ENSMUSG00000063590.4	Slc22a28	chr19	protein_coding	solute carrier family 22, member 28
novel_NIR_10281	chr19	8078857	8093911	-	8078857	8094101	A5SS	ENSMUST00000065651.5	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	11	0	11	n	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.17	3	15	3	15	y	0.00	0	21	0	21	n	0.10	2	19	2	19	n	0.12	3	23	3	23	n	ENSMUSG00000063590.4	Slc22a28	chr19	protein_coding	solute carrier family 22, member 28
novel_NIR_10282	chr19	8103545	8107560	-	8094513	8107560	A3SS	ENSMUST00000065651.5	novel	0.00	0	9	0	9	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.19	3	13	3	13	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	9	0	9	n	-	-	-	-	-	-	0.11	2	17	2	17	n	0.00	0	25	0	25	n	0.00	0	13	0	13	n	0.00	0	24	0	24	n	ENSMUSG00000063590.4	Slc22a28	chr19	protein_coding	solute carrier family 22, member 28
novel_NIR_10283	chr19	8103575	8107560	-	8094513	8107560	A3SS	ENSMUST00000065651.5	novel	0.10	1	9	1	9	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.19	3	13	3	13	y	0.17	1	5	1	5	n	-	-	-	-	-	-	0.10	1	9	1	9	n	-	-	-	-	-	-	0.29	7	17	7	17	y	0.36	14	25	14	25	y	0.28	5	13	5	13	y	0.00	0	24	0	24	n	ENSMUSG00000063590.4	Slc22a28	chr19	protein_coding	solute carrier family 22, member 28
novel_NIR_10284	chr19	8184782	8195636	-	8184782;8195231	8195128;8195636	ES	ENSMUST00000113298.9	novel	0.00	0	8.5	0	16;1	n	0.00	0	1.5	0	3;0	n	-	-	-	-	-	-	0.00	0	8.0	0	14;2	n	0.00	0	7.0	0	14;0	n	-	-	-	-	-	-	0.00	0	4.5	0	9;0	n	0.50	3	3.0	3	6;0	y	0.00	0	8.0	0	16;0	n	0.00	0	10.0	0	20;0	n	0.00	0	4.5	0	9;0	n	0.11	1	8.0	1	16;0	n	ENSMUSG00000075044.15	Slc22a29	chr19	protein_coding	solute carrier family 22. member 29
novel_NIR_10285	chr19	8314216	8321872	-	8313185	8321872	A3SS	ENSMUST00000064507.12	novel	0.07	1	13	1	13	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.25	3	9	3	9	y	0.11	1	8	1	8	n	0.00	0	1	0	1	n	0.15	2	11	2	11	y	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.08	2	23	2	23	n	0.00	0	8	0	8	n	0.17	4	20	4	20	y	ENSMUSG00000052562.16	Slc22a30	chr19	protein_coding	solute carrier family 22, member 30
novel_NIR_10286	chr19	8314282	8321872	-	8313185	8321872	A3SS	ENSMUST00000064507.12	novel	0.07	1	13	1	13	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.44	7	9	7	9	y	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.07	1	13	1	13	n	0.08	2	23	2	23	n	0.27	3	8	3	8	y	0.09	2	20	2	20	n	ENSMUSG00000052562.16	Slc22a30	chr19	protein_coding	solute carrier family 22, member 30
novel_NIR_10287	chr19	8314290	8321872	-	8313185	8321872	A3SS	ENSMUST00000064507.12	novel	0.07	1	13	1	13	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.08	1	11	1	11	n	0.11	1	8	1	8	n	0.32	6	13	6	13	y	0.15	4	23	4	23	y	0.00	0	8	0	8	n	0.00	0	20	0	20	n	ENSMUSG00000052562.16	Slc22a30	chr19	protein_coding	solute carrier family 22, member 30
novel_NIR_10288	chr19	8315343	8317213	-	8315343	8321872	A5SS	ENSMUST00000096269.11	novel	0.38	70	115	70	115	y	0.32	59	125	59	125	y	0.00	0	20	0	20	n	0.28	60	155	60	155	y	0.40	58	88	58	88	y	0.08	1	12	1	12	n	0.27	44	120	44	120	y	0.42	14	19	14	19	y	0.28	70	177	70	177	y	0.24	73	233	73	233	y	0.28	75	192	75	192	y	0.32	103	223	103	223	y	ENSMUSG00000052562.16	Slc22a30	chr19	protein_coding	solute carrier family 22, member 30
novel_NIR_10289	chr19	8320335	8321872	-	8313185	8321872	A3SS	ENSMUST00000064507.12	novel	0.19	3	13	3	13	y	0.27	4	11	4	11	y	0.00	0	4	0	4	n	0.10	1	9	1	9	n	0.11	1	8	1	8	n	0.50	1	1	1	1	n	0.15	2	11	2	11	n	0.00	0	8	0	8	n	0.32	6	13	6	13	y	0.23	7	23	7	23	y	0.53	9	8	9	8	y	0.33	10	20	10	20	n	ENSMUSG00000052562.16	Slc22a30	chr19	protein_coding	solute carrier family 22, member 30
novel_NIR_10290	chr19	8320444	8321872	-	8313185	8321872	A3SS	ENSMUST00000064507.12	novel	0.07	1	13	1	13	n	0.21	3	11	3	11	y	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.19	3	13	3	13	y	0.00	0	23	0	23	n	0.33	4	8	4	8	y	0.00	0	20	0	20	n	ENSMUSG00000052562.16	Slc22a30	chr19	protein_coding	solute carrier family 22, member 30
novel_NIR_10291	chr19	8701553	8701761	+	8701553	8701741	A3SS	ENSMUST00000205825.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000108414.2	Snhg1	chr19	lncRNA	small nucleolar RNA host gene 1
novel_NIR_10292	chr19	8718939	8719382	+	8718939	8720218	A3SS	ENSMUST00000177373.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000010110.18	Stx5a	chr19	protein_coding	syntaxin 5A
novel_NIR_10293	chr19	8720292	8720444	+	8719861	8720444	A5SS	ENSMUST00000177322.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000010110.18	Stx5a	chr19	protein_coding	syntaxin 5A
novel_NIR_10294	chr19	8727391	8729656	+	8727391	8732241	A3SS	ENSMUST00000010254.16	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000010110.18	Stx5a	chr19	protein_coding	syntaxin 5A
novel_NIR_10295	chr19	8727391	8732328	+	8727391	8732241	A3SS	ENSMUST00000010254.16	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000010110.18	Stx5a	chr19	protein_coding	syntaxin 5A
novel_NIR_10296	chr19	8750470	8750869	-	8750470	8751699	A5SS	ENSMUST00000235756.2	novel	0.31	5	11	5	11	n	0.15	2	11	2	11	y	0.25	1	3	1	3	n	0.25	4	12	4	12	y	0.20	2	8	2	8	n	0.40	4	6	4	6	y	0.08	1	11	1	11	n	0.00	0	11	0	11	n	0.33	2	4	2	4	y	0.09	1	10	1	10	n	0.00	0	11	0	11	n	0.33	4	8	4	8	y	ENSMUSG00000118346.2	Tmem179b	chr19	protein_coding	transmembrane protein 179B
novel_NIR_10297	chr19	8750470;8751069	8750869;8751699	-	8750470	8751699	cassetteExon	ENSMUST00000235756.2	novel	0.21	3.0	11	5;1	11	n	0.08	1.0	11	2;0	11	n	0.14	0.5	3	1;0	3	n	0.14	2.0	12	4;0	12	n	0.24	2.5	8	2;3	8	y	0.25	2.0	6	4;0	6	n	0.04	0.5	11	1;0	11	n	0.00	0.0	11	0;0	11	n	0.20	1.0	4	2;0	4	n	0.13	1.5	10	1;2	10	n	0.00	0.0	11	0;0	11	n	0.20	2.0	8	4;0	8	n	ENSMUSG00000118346.2	Tmem179b	chr19	protein_coding	transmembrane protein 179B
novel_NIR_10298	chr19	8750788	8751699	-	8750470	8751699	A3SS	ENSMUST00000235756.2	novel	0.35	6	11	6	11	y	0.35	6	11	6	11	y	0.25	1	3	1	3	n	0.08	1	12	1	12	n	0.38	5	8	5	8	y	0.14	1	6	1	6	n	0.31	5	11	5	11	y	0.15	2	11	2	11	y	0.33	2	4	2	4	y	0.47	9	10	9	10	y	0.15	2	11	2	11	y	0.33	4	8	4	8	y	ENSMUSG00000118346.2	Tmem179b	chr19	protein_coding	transmembrane protein 179B
novel_NIR_10299	chr19	8750788	8751699	-	8750788;8750986	8750869;8751699	ES	ENSMUST00000237634.2	novel	0.13	6	41.0	6	69;13	n	0.16	6	32.0	6	59;5	y	0.02	1	52.0	1	96;8	n	0.03	1	34.5	1	61;8	n	0.10	5	45.0	5	84;6	n	0.04	1	25.5	1	46;5	n	0.09	5	51.5	5	92;11	n	0.10	2	19.0	2	36;2	n	0.07	2	26.0	2	46;6	n	0.17	9	45.0	9	82;8	y	0.06	2	30.5	2	57;4	n	0.09	4	42.0	4	73;11	n	ENSMUSG00000118346.2	Tmem179b	chr19	protein_coding	transmembrane protein 179B
novel_NIR_10300	chr19	8751069	8751699	-	8750986	8751699	A3SS	ENSMUST00000237634.2	novel	0.07	1	13	1	13	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.33	3	6	3	6	y	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.20	2	8	2	8	y	0.00	0	4	0	4	n	0.00	0	11	0	11	n	ENSMUSG00000118346.2	Tmem179b	chr19	protein_coding	transmembrane protein 179B
novel_NIR_10301	chr19	8760749	8761199	-	8760754	8761199	A3SS	ENSMUST00000177216.8	novel	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	22	0	22	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.08	1	12	1	12	n	0.12	1	7	1	7	n	0.18	2	9	2	9	y	0.00	0	10	0	10	n	0.11	1	8	1	8	n	ENSMUSG00000003680.17	Taf6l	chr19	protein_coding	TATA-box binding protein associated factor 6 like
novel_NIR_10302	chr19	8818234	8818472	+	8817148	8818472	A5SS	ENSMUST00000237654.2	novel	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.15	2	11	2	11	y	0.08	2	23	2	23	n	0.08	1	12	1	12	n	0.12	3	23	3	23	n	0.25	2	6	2	6	y	0.00	0	20	0	20	n	0.15	6	33	6	33	y	0.00	0	18	0	18	n	0.05	1	19	1	19	n	ENSMUSG00000118124.2	Gm50139	chr19	protein_coding	predicted gene, 50139
novel_NIR_10303	chr19	8822678	8823578	+	8822678	8823613	A3SS	ENSMUST00000160897.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	ENSMUSG00000071657.13	Bscl2	chr19	protein_coding	Berardinelli-Seip congenital lipodystrophy 2 (seipin)
novel_NIR_10304	chr19	8866612	8866997	+	8866612	8867001	A3SS	ENSMUST00000185488.7	novel	0.00	0	22	0	22	n	0.50	4	4	4	4	y	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.15	3	17	3	17	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.21	3	11	3	11	y	0.17	1	5	1	5	n	0.17	2	10	2	10	y	ENSMUSG00000071653.10	1810009A15Rik	chr19	protein_coding	RIKEN cDNA 1810009A15 gene
novel_NIR_10305	chr19	8875864	8879628	+	8876758	8879628	A5SS&ES	ENSMUST00000236563.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	3	3	3	3	y	-	-	-	-	-	-	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000071650.7	Ganab	chr19	protein_coding	alpha glucosidase 2 alpha neutral subunit
novel_NIR_10306	chr19	8908334	8908465	+	8908334	8908408	A3SS	ENSMUST00000096241.6	novel	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	25	0	25	n	0.00	0	17	0	17	n	0.09	2	21	2	21	n	0.00	0	10	0	10	n	0.15	2	11	2	11	y	0.10	2	19	2	19	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	19	0	19	n	0.00	0	18	0	18	n	ENSMUSG00000071647.6	Eml3	chr19	protein_coding	echinoderm microtubule associated protein like 3
novel_NIR_10307	chr19	8908334	8908465	+	8908334	8908411	A3SS	ENSMUST00000224272.2	novel	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	15	0	15	n	0.00	0	16	0	16	n	0.08	2	23	2	23	n	0.00	0	9	0	9	n	0.20	2	8	2	8	y	0.29	2	5	2	5	y	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	18	0	18	n	ENSMUSG00000071647.6	Eml3	chr19	protein_coding	echinoderm microtubule associated protein like 3
novel_NIR_10308	chr19	8910673	8910790	+	8910673	8910787	A3SS	ENSMUST00000096241.6	novel	0.00	0	15	0	15	n	0.18	2	9	2	9	y	0.04	1	26	1	26	n	0.00	0	18	0	18	n	0.00	0	36	0	36	n	0.05	1	20	1	20	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.15	2	11	2	11	y	0.04	1	23	1	23	n	0.00	0	17	0	17	n	0.00	0	30	0	30	n	ENSMUSG00000071647.6	Eml3	chr19	protein_coding	echinoderm microtubule associated protein like 3
novel_NIR_10309	chr19	8915913	8918566	-	8915913	8918016	5pMXE	ENSMUST00000225181.2	novel	1.00	2	0	2	0	y	0.71	5	2	5	2	y	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.60	3	2	3	2	y	0.00	0	1	0	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	1	0	1	0	n	0.43	3	4	3	4	y	ENSMUSG00000114220.2	Gm10353	chr19	lncRNA	predicted gene 10353
novel_NIR_10310	chr19	8947351	8949724	+	8947351	8947949	A3SS&ES	ENSMUST00000128626.2	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000071644.11	Eef1g	chr19	protein_coding	eukaryotic translation elongation factor 1 gamma
novel_NIR_10311	chr19	9024960	9053940	+	9014622	9053940	A5SS	ENSMUST00000092955.11	novel	1.00	36	0	36	0	y	1.00	41	0	41	0	y	0.89	8	1	8	1	y	1.00	29	0	29	0	y	0.99	67	1	67	1	y	1.00	14	0	14	0	y	0.96	51	2	51	2	y	1.00	10	0	10	0	y	0.97	38	1	38	1	y	1.00	48	0	48	0	y	0.98	55	1	55	1	y	1.00	45	0	45	0	y	ENSMUSG00000069833.14	Ahnak	chr19	protein_coding	AHNAK nucleoprotein (desmoyokin)
novel_NIR_10312	chr19	9024960	9053940	+	9023080	9053940	A5SS	ENSMUST00000237033.2	novel	1.00	36	0	36	0	y	1.00	41	0	41	0	y	1.00	8	0	8	0	y	1.00	29	0	29	0	y	1.00	67	0	67	0	y	0.93	14	1	14	1	y	1.00	51	0	51	0	y	1.00	10	0	10	0	y	0.97	38	1	38	1	y	0.98	48	1	48	1	y	0.96	55	2	55	2	y	1.00	45	0	45	0	y	ENSMUSG00000069833.14	Ahnak	chr19	protein_coding	AHNAK nucleoprotein (desmoyokin)
novel_NIR_10313	chr19	9024960	9053940	+	9044965	9053940	A5SS&ES	ENSMUST00000237912.2	novel	1.00	36	0	36	0	y	1.00	41	0	41	0	y	1.00	8	0	8	0	y	0.97	29	1	29	1	y	1.00	67	0	67	0	y	1.00	14	0	14	0	y	0.94	51	3	51	3	y	1.00	10	0	10	0	y	1.00	38	0	38	0	y	1.00	48	0	48	0	y	1.00	55	0	55	0	y	1.00	45	0	45	0	y	ENSMUSG00000069833.14	Ahnak	chr19	protein_coding	AHNAK nucleoprotein (desmoyokin)
novel_NIR_10314	chr19	9028494	9053940	+	9014622	9053940	A5SS	ENSMUST00000092955.11	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.60	3	2	3	2	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	4	0	4	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000069833.14	Ahnak	chr19	protein_coding	AHNAK nucleoprotein (desmoyokin)
novel_NIR_10315	chr19	9028494	9053940	+	9023080	9053940	A5SS	ENSMUST00000237033.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.80	4	1	4	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000069833.14	Ahnak	chr19	protein_coding	AHNAK nucleoprotein (desmoyokin)
novel_NIR_10316	chr19	9028494	9053940	+	9044965	9053940	A5SS&ES	ENSMUST00000237912.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.50	3	3	3	3	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000069833.14	Ahnak	chr19	protein_coding	AHNAK nucleoprotein (desmoyokin)
novel_NIR_10317	chr19	9033222	9053940	+	9014622	9053940	A5SS	ENSMUST00000092955.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000069833.14	Ahnak	chr19	protein_coding	AHNAK nucleoprotein (desmoyokin)
novel_NIR_10318	chr19	9033222	9053940	+	9023080	9053940	A5SS	ENSMUST00000237033.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000069833.14	Ahnak	chr19	protein_coding	AHNAK nucleoprotein (desmoyokin)
novel_NIR_10319	chr19	9033222	9053940	+	9044965	9053940	A5SS&ES	ENSMUST00000237912.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000069833.14	Ahnak	chr19	protein_coding	AHNAK nucleoprotein (desmoyokin)
novel_NIR_10320	chr19	9960347	9961581	+	9960347	9961617	A3SS	ENSMUST00000235407.2	novel	1.00	50	0	50	0	y	0.00	0	107	0	107	n	0.00	0	132	0	132	n	-	-	-	-	-	-	1.00	21	0	21	0	y	-	-	-	-	-	-	0.20	33	131	33	131	y	0.34	45	86	45	86	y	0.00	0	94	0	94	n	0.00	0	155	0	155	n	0.00	0	161	0	161	n	-	-	-	-	-	-	ENSMUSG00000024661.8	Fth1	chr19	protein_coding	ferritin heavy polypeptide 1
novel_NIR_10321	chr19	9960774	9961545	+	9960538	9961545	A5SS	ENSMUST00000236195.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.29	2	5	2	5	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000024661.8	Fth1	chr19	protein_coding	ferritin heavy polypeptide 1
novel_NIR_10322	chr2	10060972	10061066	-	10060972	10063807	A5SS	ENSMUST00000026887.14	novel	0.00	0	4	0	4	n	0.43	3	4	3	4	y	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.50	1	1	1	1	n	0.01	1	132	1	132	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.20	2	8	2	8	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000025781.15	Atp5c1	chr2	protein_coding	ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1
novel_NIR_10323	chr2	10090635	10095052	+	10090635	10094924	A3SS	ENSMUST00000142599.2	novel	0.06	2	29	2	29	n	0.00	0	20	0	20	n	0.11	3	25	3	25	n	0.00	0	17	0	17	n	0.24	4	13	4	13	y	0.07	1	14	1	14	n	0.12	3	21	3	21	n	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.11	3	25	3	25	n	0.10	1	9	1	9	n	0.21	3	11	3	11	y	ENSMUSG00000037262.8	Kin	chr2	protein_coding	Kin17 DNA and RNA binding protein
novel_NIR_10324	chr2	10090635	10095052	+	10090635;10094967	10094924;10095052	ES	ENSMUST00000042512.8	novel	0.07	2	28.0	2	29;27	n	0.00	0	20.0	0	20;20	n	0.12	3	22.5	3	25;20	n	0.00	0	16.0	0	17;15	n	0.18	4	18.5	4	13;24	y	0.06	1	15.5	1	14;17	n	0.13	3	20.5	3	21;20	n	0.00	0	12.5	0	16;9	n	0.00	0	13.5	0	11;16	n	0.10	3	27.5	3	25;30	n	0.10	1	9.5	1	9;10	n	0.21	3	11.5	3	11;12	y	ENSMUSG00000037262.8	Kin	chr2	protein_coding	Kin17 DNA and RNA binding protein
novel_NIR_10325	chr2	10135462	10135561	-	10135462	10135812	A5SS	ENSMUST00000155809.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.73	80	29	80	29	y	1.00	27	0	27	0	y	1.00	72	0	72	0	y	0.83	43	9	43	9	y	0.95	21	1	21	1	y	0.93	28	2	28	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	17	0	17	0	y	ENSMUSG00000037254.19	Itih2	chr2	protein_coding	inter-alpha trypsin inhibitor, heavy chain 2
novel_NIR_10326	chr2	10135462	10135561	-	10135462	10136135	A5SS	ENSMUST00000161909.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.99	80	1	80	1	y	1.00	27	0	27	0	y	0.92	72	6	72	6	y	0.93	43	3	43	3	y	0.91	21	2	21	2	y	1.00	28	0	28	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.85	17	3	17	3	y	ENSMUSG00000037254.19	Itih2	chr2	protein_coding	inter-alpha trypsin inhibitor, heavy chain 2
novel_NIR_10327	chr2	10135462	10136201	-	10135462	10135812	5pMXE	ENSMUST00000155809.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.06	2	29	2	29	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.10	1	9	1	9	n	0.50	1	1	1	1	n	0.33	1	2	1	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037254.19	Itih2	chr2	protein_coding	inter-alpha trypsin inhibitor, heavy chain 2
novel_NIR_10328	chr2	10135462	10136201	-	10135462	10136135	A5SS	ENSMUST00000161909.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	1.00	1	0	1	0	n	0.33	3	6	3	6	y	0.25	1	3	1	3	n	0.33	1	2	1	2	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000037254.19	Itih2	chr2	protein_coding	inter-alpha trypsin inhibitor, heavy chain 2
novel_NIR_10329	chr2	101511372	101512364	+	101511372	101514824	A3SS	ENSMUST00000004949.8	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.10	1	9	1	9	n	0.00	0	7	0	7	n	0.00	0	17	0	17	n	0.00	0	4	0	4	n	0.00	0	20	0	20	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.20	3	12	3	12	y	0.00	0	9	0	9	n	0.00	0	7	0	7	n	ENSMUSG00000027164.9	Traf6	chr2	protein_coding	TNF receptor-associated factor 6
novel_NIR_10330	chr2	10158566	10162893	+	10158566	10169495	A3SS	ENSMUST00000026886.8	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.33	2	4	2	4	y	0.00	0	1	0	1	n	0.00	0	7	0	7	n	ENSMUSG00000025780.8	Itih5	chr2	protein_coding	inter-alpha (globulin) inhibitor H5
novel_NIR_10331	chr2	10190493	10195011	+	10190493;10191867	10191766;10195011	ES	ENSMUST00000026886.8	novel	0.00	0	5.0	0	5;5	n	0.00	0	1.0	0	1;1	n	0.31	2	4.5	2	4;5	y	0.00	0	6.5	0	7;6	n	0.00	0	10.0	0	10;10	n	0.22	1	3.5	1	4;3	n	0.18	1	4.5	1	3;6	n	0.00	0	6.0	0	2;10	n	0.10	1	9.0	1	11;7	n	0.00	0	3.0	0	2;4	n	0.00	0	4.0	0	3;5	n	0.20	1	4.0	1	4;4	n	ENSMUSG00000025780.8	Itih5	chr2	protein_coding	inter-alpha (globulin) inhibitor H5
novel_NIR_10332	chr2	101944024	101944189	-	101944024	101968239	A5SS	ENSMUST00000127888.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000048058.18	Ldlrad3	chr2	protein_coding	low density lipoprotein receptor class A domain containing 3
novel_NIR_10333	chr2	101944024	101944189	-	101944024	102016625	A5SS	ENSMUST00000111222.2	novel	0.00	0	6	0	6	n	0.20	1	4	1	4	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.20	1	4	1	4	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.50	2	2	2	2	y	0.00	0	5	0	5	n	1.00	1	0	1	0	n	0.08	1	12	1	12	n	ENSMUSG00000048058.18	Ldlrad3	chr2	protein_coding	low density lipoprotein receptor class A domain containing 3
novel_NIR_10334	chr2	101944024	101944199	-	101944024	101968239	A5SS	ENSMUST00000127888.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000048058.18	Ldlrad3	chr2	protein_coding	low density lipoprotein receptor class A domain containing 3
novel_NIR_10335	chr2	101944024	101944199	-	101944024	102016625	A5SS	ENSMUST00000111222.2	novel	0.00	0	6	0	6	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.30	3	7	3	7	y	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	12	0	12	n	ENSMUSG00000048058.18	Ldlrad3	chr2	protein_coding	low density lipoprotein receptor class A domain containing 3
novel_NIR_10336	chr2	102516614	102535336	+	102516614	102566289	A3SS	ENSMUST00000136221.8	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	4	0	4	n	ENSMUSG00000005089.16	Slc1a2	chr2	protein_coding	solute carrier family 1 (glial high affinity glutamate transporter), member 2
novel_NIR_10337	chr2	102608000	102611832	+	102608000	102611062	A3SS&ES	ENSMUST00000154446.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	ENSMUSG00000005089.16	Slc1a2	chr2	protein_coding	solute carrier family 1 (glial high affinity glutamate transporter), member 2
novel_NIR_10338	chr2	102913400	102913539	+	102913400	102918906	A3SS	ENSMUST00000124540.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000010911.13	Apip	chr2	protein_coding	APAF1 interacting protein
novel_NIR_10339	chr2	103618548	103626859	-	103618548	103627076	A5SS	ENSMUST00000141750.8	novel	0.00	0	9	0	9	n	-	-	-	-	-	-	0.20	2	8	2	8	y	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.29	2	5	2	5	y	0.00	0	5	0	5	n	0.00	0	3	0	3	n	ENSMUSG00000027184.15	Caprin1	chr2	protein_coding	cell cycle associated protein 1
novel_NIR_10340	chr2	103885204	103885297	+	103885204	103890227	A3SS	ENSMUST00000111136.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000027180.13	Fbxo3	chr2	protein_coding	F-box protein 3
novel_NIR_10341	chr2	103911443	103920074	+	103911443	103914767	3pMXE	ENSMUST00000129749.8	novel	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	13	0	13	n	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	ENSMUSG00000068686.13	Cd59b	chr2	protein_coding	CD59b antigen
novel_NIR_10342	chr2	103911443	103920074	+	103911443	103920474	A3SS	ENSMUST00000111131.9	novel	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.15	2	11	2	11	y	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	19	0	19	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	ENSMUSG00000068686.13	Cd59b	chr2	protein_coding	CD59b antigen
novel_NIR_10343	chr2	104265059	104265281	-	104265062	104265281	A3SS	ENSMUST00000028600.14	novel	0.30	8	19	8	19	y	0.14	4	24	4	24	n	0.23	22	72	22	72	y	0.21	12	45	12	45	y	0.24	25	78	25	78	y	0.23	6	20	6	20	y	0.27	21	57	21	57	y	0.24	19	59	19	59	y	0.28	10	26	10	26	y	0.28	18	47	18	47	y	0.06	2	30	2	30	n	0.22	14	50	14	50	y	ENSMUSG00000027177.15	Hipk3	chr2	protein_coding	homeodomain interacting protein kinase 3
novel_NIR_10344	chr2	104439531	104470385	+	104439531	104474634	A3SS	ENSMUST00000028599.8	novel	0.00	0	24	0	24	n	0.00	0	3	0	3	n	0.00	0	25	0	25	n	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.18	2	9	2	9	y	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	ENSMUSG00000027176.9	Cstf3	chr2	protein_coding	cleavage stimulation factor, 3' pre-RNA, subunit 3
novel_NIR_10345	chr2	104460099	104474634	+	104439531	104474634	A5SS	ENSMUST00000028599.8	novel	0.04	1	24	1	24	n	0.00	0	3	0	3	n	0.00	0	25	0	25	n	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.18	2	9	2	9	y	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	ENSMUSG00000027176.9	Cstf3	chr2	protein_coding	cleavage stimulation factor, 3' pre-RNA, subunit 3
novel_NIR_10346	chr2	104491059	104494414	+	104491059	104493676	3pMXE	ENSMUST00000124944.2	novel	0.67	2	1	2	1	y	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000027176.9	Cstf3	chr2	protein_coding	cleavage stimulation factor, 3' pre-RNA, subunit 3
novel_NIR_10347	chr2	104588950	104593156	-	104588950;104590934	104590839;104593156	ES	ENSMUST00000117237.2	novel	0.00	0	19.0	0	19;19	n	0.11	1	8.5	1	7;10	n	0.00	0	20.5	0	18;23	n	0.25	3	9.0	3	4;14	y	0.00	0	17.0	0	15;19	n	0.00	0	5.5	0	6;5	n	0.00	0	14.0	0	13;15	n	0.00	0	9.5	0	8;11	n	0.00	0	7.0	0	5;9	n	0.00	0	17.5	0	18;17	n	0.00	0	4.0	0	2;6	n	0.00	0	19.0	0	20;18	n	ENSMUSG00000074994.7	Qser1	chr2	protein_coding	glutamine and serine rich 1
novel_NIR_10348	chr2	104600525	104606545	-	104600525	104606517	A5SS	ENSMUST00000117237.2	novel	0.00	0	8	0	8	n	0.04	1	22	1	22	n	0.00	0	18	0	18	n	0.00	0	16	0	16	n	0.16	3	16	3	16	y	0.00	0	8	0	8	n	0.20	2	8	2	8	y	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.05	1	18	1	18	n	ENSMUSG00000074994.7	Qser1	chr2	protein_coding	glutamine and serine rich 1
novel_NIR_10349	chr2	104600525;104601020	104600844;104606517	-	104600525	104606517	cassetteExon	ENSMUST00000117237.2	novel	0.00	0.0	8	0;0	8	n	0.12	3.0	22	1;5	22	n	0.16	3.5	18	5;2	18	y	0.03	0.5	16	0;1	16	n	0.16	3.0	16	0;6	16	n	0.11	1.0	8	0;2	8	n	0.33	4.0	8	0;8	8	n	0.00	0.0	14	0;0	14	n	0.22	2.0	7	0;4	7	n	0.33	5.5	11	0;11	11	n	0.36	4.0	7	0;8	7	n	0.22	5.0	18	1;9	18	n	ENSMUSG00000074994.7	Qser1	chr2	protein_coding	glutamine and serine rich 1
novel_NIR_10350	chr2	104601020	104606517	-	104600525	104606517	A3SS	ENSMUST00000117237.2	novel	0.00	0	8	0	8	n	0.19	5	22	5	22	n	0.10	2	18	2	18	n	0.06	1	16	1	16	n	0.27	6	16	6	16	y	0.20	2	8	2	8	y	0.50	8	8	8	8	y	0.00	0	14	0	14	n	0.36	4	7	4	7	y	0.50	11	11	11	11	y	0.53	8	7	8	7	y	0.33	9	18	9	18	n	ENSMUSG00000074994.7	Qser1	chr2	protein_coding	glutamine and serine rich 1
novel_NIR_10351	chr2	104847662	104848015	+	104824947	104848015	A5SS	ENSMUST00000144358.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000045106.13	Ccdc73	chr2	protein_coding	coiled-coil domain containing 73
novel_NIR_10352	chr2	104847662	104848015	+	104847548	104848015	A5SS	ENSMUST00000130611.2	novel	0.19	3	13	3	13	y	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	22	0	22	n	0.00	0	8	0	8	n	0.00	0	19	0	19	n	0.24	4	13	4	13	y	0.00	0	10	0	10	n	0.00	0	35	0	35	n	0.08	1	12	1	12	n	0.00	0	14	0	14	n	ENSMUSG00000045106.13	Ccdc73	chr2	protein_coding	coiled-coil domain containing 73
novel_NIR_10353	chr2	106799903	106804647	-	106799903	106800656	5pMXE	ENSMUST00000093883.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	7	0	7	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	8	0	8	0	y	1.00	4	0	4	0	y	1.00	8	0	8	0	y	ENSMUSG00000027122.16	Arl14ep	chr2	protein_coding	ADP-ribosylation factor-like 14 effector protein
novel_NIR_10354	chr2	106799903	106804647	-	106799903	106804617	A5SS	ENSMUST00000028536.13	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.31	5	11	5	11	y	0.39	7	11	7	11	y	0.17	1	5	1	5	n	0.25	3	9	3	9	y	0.43	3	4	3	4	y	0.33	3	6	3	6	y	0.42	8	11	8	11	y	0.50	4	4	4	4	y	0.42	8	11	8	11	y	ENSMUSG00000027122.16	Arl14ep	chr2	protein_coding	ADP-ribosylation factor-like 14 effector protein
novel_NIR_10355	chr2	109748650	109755956	+	109748650	109820050	A3SS	ENSMUST00000111037.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000050199.14	Lgr4	chr2	protein_coding	leucine-rich repeat-containing G protein-coupled receptor 4
novel_NIR_10356	chr2	110136015	110144533	-	110136012	110144533	A3SS	ENSMUST00000133608.2	novel	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.06	1	16	1	16	n	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.17	2	10	2	10	y	0.19	3	13	3	13	y	0.05	1	21	1	21	n	0.00	0	9	0	9	n	ENSMUSG00000041660.9	Bbox1	chr2	protein_coding	butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase)
novel_NIR_10357	chr2	112070402	112071890	+	112070402	112071796	A3SS	ENSMUST00000028554.4	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000027134.5	Lpcat4	chr2	protein_coding	lysophosphatidylcholine acyltransferase 4
novel_NIR_10358	chr2	112170345	112172176	+	112169832	112172176	A5SS	ENSMUST00000110991.9	novel	0.15	2	11	2	11	y	0.00	0	3	0	3	n	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000027130.16	Slc12a6	chr2	protein_coding	solute carrier family 12, member 6
novel_NIR_10359	chr2	112184714	112185390	+	112184714	112185320	A3SS	ENSMUST00000110991.9	novel	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.10	1	9	1	9	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.17	1	5	1	5	n	0.17	2	10	2	10	y	0.10	1	9	1	9	n	ENSMUSG00000027130.16	Slc12a6	chr2	protein_coding	solute carrier family 12, member 6
novel_NIR_10360	chr2	112194650	112197739	-	112194650	112197678	A5SS	ENSMUST00000153967.2	novel	1.00	2	0	2	0	y	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027131.4	Emc4	chr2	protein_coding	ER membrane protein complex subunit 4
novel_NIR_10361	chr2	113377351	113393628	+	113359808	113393628	A5SS	ENSMUST00000099576.9	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000044042.20	Fmn1	chr2	protein_coding	formin 1
novel_NIR_10362	chr2	11359880	11360327	-	11359880	11403204	A5SS	ENSMUST00000192626.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000102674.2	8030442B05Rik	chr2	lncRNA	RIKEN cDNA 8030442B05 gene
novel_NIR_10363	chr2	113971491	113973465	-	113971491	113973469	A5SS	ENSMUST00000043160.13	novel	0.00	0	9	0	9	n	0.33	2	4	2	4	y	0.00	0	19	0	19	n	0.00	0	21	0	21	n	0.00	0	16	0	16	n	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	17	0	17	n	ENSMUSG00000040383.17	Aqr	chr2	protein_coding	aquarius
novel_NIR_10364	chr2	114028108	114031436	-	114028108	114031818	A5SS	ENSMUST00000050668.4	novel	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.14	1	6	1	6	n	ENSMUSG00000040321.4	Zfp770	chr2	protein_coding	zinc finger protein 770
novel_NIR_10365	chr2	11479354	11484920	-	11479354	11480565	A5SS&ES	ENSMUST00000028114.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026773.20	Pfkfb3	chr2	protein_coding	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
novel_NIR_10366	chr2	11479354	11484920	-	11479354	11482847	A5SS&ES	ENSMUST00000170196.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026773.20	Pfkfb3	chr2	protein_coding	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
novel_NIR_10367	chr2	11479354	11484920	-	11479354	11486682	A5SS	ENSMUST00000183869.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.75	6	2	6	2	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000026773.20	Pfkfb3	chr2	protein_coding	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
novel_NIR_10368	chr2	115412466	115434045	+	115412466	115461486	A3SS	ENSMUST00000166472.8	novel	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.50	3	3	3	3	y	0.00	0	6	0	6	n	0.19	3	13	3	13	n	0.20	1	4	1	4	n	0.00	0	7	0	7	n	0.19	3	13	3	13	n	0.00	0	3	0	3	n	0.18	2	9	2	9	n	0.00	0	4	0	4	n	0.40	2	3	2	3	n	ENSMUSG00000040282.14	Cdin1	chr2	protein_coding	CDAN1 interacting nuclease 1
novel_NIR_10369	chr2	115412466;115434111	115434045;115461486	+	115412466	115461486	cassetteExon	ENSMUST00000166472.8	novel	0.00	0.0	3	0;0	3	n	0.20	0.5	2	1;0	2	n	0.33	1.5	3	3;0	3	n	0.14	1.0	6	0;2	6	n	0.16	2.5	13	3;2	13	y	0.11	0.5	4	1;0	4	n	0.00	0.0	7	0;0	7	n	0.13	2.0	13	3;1	13	n	0.00	0.0	3	0;0	3	n	0.14	1.5	9	2;1	9	n	0.00	0.0	4	0;0	4	n	0.50	3.0	3	2;4	3	y	ENSMUSG00000040282.14	Cdin1	chr2	protein_coding	CDAN1 interacting nuclease 1
novel_NIR_10370	chr2	115434111	115461486	+	115412466	115461486	A5SS	ENSMUST00000166472.8	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.25	2	6	2	6	y	0.13	2	13	2	13	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.07	1	13	1	13	n	0.00	0	3	0	3	n	0.10	1	9	1	9	n	0.00	0	4	0	4	n	0.57	4	3	4	3	n	ENSMUSG00000040282.14	Cdin1	chr2	protein_coding	CDAN1 interacting nuclease 1
novel_NIR_10371	chr2	115898731	115904834	+	115898731	115913277	A3SS	ENSMUST00000152412.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000086308.2	G630016G05Rik	chr2	lncRNA	RIKEN cDNA G630016G05 gene
novel_NIR_10372	chr2	11704276	11723075	+	11710755	11723075	5pMXE	ENSMUST00000138856.2	novel	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.12	1	7	1	7	n	0.20	1	4	1	4	n	0.18	2	9	2	9	y	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	ENSMUSG00000023206.17	Il15ra	chr2	protein_coding	interleukin 15 receptor, alpha chain
novel_NIR_10373	chr2	117090834	117094304	+	117090834;117093400	117093320;117094304	ES	ENSMUST00000028825.5	novel	0.13	6	40.5	6	47;34	n	0.04	1	27.5	1	28;27	n	0.12	8	60.0	8	69;51	n	0.07	3	40.5	3	44;37	n	0.00	0	50.5	0	57;44	n	0.03	1	33.0	1	28;38	n	0.15	8	46.0	8	44;48	y	0.06	2	31.5	2	33;30	n	0.08	3	32.5	3	36;29	n	0.18	10	44.5	10	53;36	y	0.20	10	39.5	10	40;39	y	0.14	5	31.5	5	35;28	n	ENSMUSG00000027349.6	Fam98b	chr2	protein_coding	family with sequence similarity 98, member B
novel_NIR_10374	chr2	11713533	11723075	+	11710755	11723075	A5SS	ENSMUST00000138856.2	novel	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.27	3	8	3	8	y	0.00	0	10	0	10	n	0.36	4	7	4	7	y	0.00	0	4	0	4	n	0.10	1	9	1	9	n	0.00	0	8	0	8	n	0.33	3	6	3	6	y	0.12	2	14	2	14	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	ENSMUSG00000023206.17	Il15ra	chr2	protein_coding	interleukin 15 receptor, alpha chain
novel_NIR_10375	chr2	11724916	11726006	+	11724916	11728323	A3SS	ENSMUST00000114831.9	novel	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.20	1	4	1	4	n	-	-	-	-	-	-	0.40	2	3	2	3	y	1.00	2	0	2	0	y	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.17	1	5	1	5	n	ENSMUSG00000023206.17	Il15ra	chr2	protein_coding	interleukin 15 receptor, alpha chain
novel_NIR_10376	chr2	11724916	11726006	+	11724916	11728907	A3SS	ENSMUST00000191662.6	novel	0.00	0	4	0	4	n	0.40	4	6	4	6	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.29	2	5	2	5	y	0.50	2	2	2	2	y	0.00	0	5	0	5	n	0.11	1	8	1	8	n	0.00	0	5	0	5	n	0.11	1	8	1	8	n	ENSMUSG00000023206.17	Il15ra	chr2	protein_coding	interleukin 15 receptor, alpha chain
novel_NIR_10377	chr2	11724916	11727613	+	11724916	11728323	A3SS	ENSMUST00000114831.9	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000023206.17	Il15ra	chr2	protein_coding	interleukin 15 receptor, alpha chain
novel_NIR_10378	chr2	11724916	11727613	+	11724916	11728907	A3SS	ENSMUST00000191662.6	novel	0.00	0	4	0	4	n	0.25	2	6	2	6	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	ENSMUSG00000023206.17	Il15ra	chr2	protein_coding	interleukin 15 receptor, alpha chain
novel_NIR_10379	chr2	11724916	11728251	+	11724916	11728323	A3SS	ENSMUST00000114831.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000023206.17	Il15ra	chr2	protein_coding	interleukin 15 receptor, alpha chain
novel_NIR_10380	chr2	11724916	11728251	+	11724916	11728907	A3SS	ENSMUST00000191662.6	novel	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.50	2	2	2	2	y	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	ENSMUSG00000023206.17	Il15ra	chr2	protein_coding	interleukin 15 receptor, alpha chain
novel_NIR_10381	chr2	11727782	11728224	+	11723269	11728224	A5SS	ENSMUST00000135341.8	novel	0.40	2	3	2	3	y	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.09	1	10	1	10	n	0.17	1	5	1	5	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	ENSMUSG00000023206.17	Il15ra	chr2	protein_coding	interleukin 15 receptor, alpha chain
novel_NIR_10382	chr2	11728939	11733620	+	11728939	11732574	A3SS&ES	ENSMUST00000148748.8	novel	0.00	0	7	0	7	n	0.21	4	15	4	15	y	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.10	1	9	1	9	n	0.07	1	14	1	14	n	0.00	0	17	0	17	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	ENSMUSG00000023206.17	Il15ra	chr2	protein_coding	interleukin 15 receptor, alpha chain
novel_NIR_10383	chr2	11728939	11735236	+	11728939	11732574	A3SS&ES	ENSMUST00000148748.8	novel	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.25	3	9	3	9	y	0.13	2	13	2	13	n	ENSMUSG00000023206.17	Il15ra	chr2	protein_coding	interleukin 15 receptor, alpha chain
novel_NIR_10384	chr2	11732644	11733620	+	11732644	11735382	A3SS	ENSMUST00000148748.8	novel	0.00	0	5	0	5	n	0.07	1	13	1	13	n	0.80	4	1	4	1	y	0.09	1	10	1	10	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.07	1	14	1	14	n	0.00	0	8	0	8	n	0.17	2	10	2	10	y	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.07	1	13	1	13	n	ENSMUSG00000023206.17	Il15ra	chr2	protein_coding	interleukin 15 receptor, alpha chain
novel_NIR_10385	chr2	11782960	11783396	+	11783038	11783396	A5SS	ENSMUST00000130186.2	novel	-	-	-	-	-	-	0.60	3	2	3	2	y	0.33	2	4	2	4	y	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000047909.12	Ankrd16	chr2	protein_coding	ankyrin repeat domain 16
novel_NIR_10386	chr2	11787530	11788452	+	11786330	11788452	A5SS	ENSMUST00000056108.12	novel	0.55	6	5	6	5	y	0.29	2	5	2	5	y	0.40	2	3	2	3	y	0.31	5	11	5	11	y	0.48	15	16	15	16	y	0.67	4	2	4	2	y	0.29	4	10	4	10	y	0.40	4	6	4	6	y	0.67	6	3	6	3	y	0.15	2	11	2	11	y	0.44	4	5	4	5	y	0.44	4	5	4	5	y	ENSMUSG00000047909.12	Ankrd16	chr2	protein_coding	ankyrin repeat domain 16
novel_NIR_10387	chr2	11787530	11788452	+	11786344	11788452	A5SS	ENSMUST00000156067.8	novel	1.00	6	0	6	0	y	0.67	2	1	2	1	y	0.40	2	3	2	3	y	1.00	5	0	5	0	y	1.00	15	0	15	0	y	0.80	4	1	4	1	y	0.67	4	2	4	2	y	0.57	4	3	4	3	y	1.00	6	0	6	0	n	0.67	2	1	2	1	y	1.00	4	0	4	0	y	0.80	4	1	4	1	y	ENSMUSG00000047909.12	Ankrd16	chr2	protein_coding	ankyrin repeat domain 16
novel_NIR_10388	chr2	11788560	11789008	+	11788560	11789102	A3SS	ENSMUST00000056108.12	novel	0.24	6	19	6	19	y	0.00	0	22	0	22	n	0.24	4	13	4	13	y	0.07	1	14	1	14	n	0.10	3	26	3	26	n	0.00	0	15	0	15	n	0.10	2	19	2	19	n	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.13	3	20	3	20	n	0.16	3	16	3	16	y	0.22	6	21	6	21	y	ENSMUSG00000047909.12	Ankrd16	chr2	protein_coding	ankyrin repeat domain 16
novel_NIR_10389	chr2	11788567	11789008	+	11788567	11789102	A3SS	ENSMUST00000150213.8	novel	0.15	2	11	2	11	y	0.00	0	11	0	11	n	0.57	4	3	4	3	y	0.00	0	15	0	15	n	0.07	1	13	1	13	n	0.07	1	13	1	13	n	0.10	1	9	1	9	n	0.09	1	10	1	10	n	0.00	0	10	0	10	n	0.07	1	13	1	13	n	0.12	2	15	2	15	n	0.00	0	12	0	12	n	ENSMUSG00000047909.12	Ankrd16	chr2	protein_coding	ankyrin repeat domain 16
novel_NIR_10390	chr2	118238985	118243416	+	118238985;118241444	118241364;118243416	ES	ENSMUST00000110877.8	novel	0.18	1	4.5	1	6;3	n	0.33	2	4.0	2	3;5	y	0.00	0	8.0	0	7;9	n	0.00	0	7.0	0	8;6	n	0.00	0	6.5	0	8;5	n	0.00	0	6.0	0	7;5	n	0.00	0	10.5	0	11;10	n	0.38	3	5.0	3	3;7	y	0.10	1	9.5	1	10;9	n	0.08	1	11.0	1	8;14	n	0.00	0	4.0	0	7;1	n	0.00	0	8.0	0	10;6	n	ENSMUSG00000005102.14	Eif2ak4	chr2	protein_coding	eukaryotic translation initiation factor 2 alpha kinase 4
novel_NIR_10391	chr2	118262761	118263068	+	118262761	118265104	A3SS	ENSMUST00000005233.12	novel	0.00	0	5	0	5	n	0.17	1	5	1	5	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.22	2	7	2	7	y	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	ENSMUSG00000005102.14	Eif2ak4	chr2	protein_coding	eukaryotic translation initiation factor 2 alpha kinase 4
novel_NIR_10392	chr2	118273707	118278757	+	118273707;118276794	118276741;118278757	ES	ENSMUST00000005233.12	novel	0.25	3	9.0	3	8;10	y	0.00	0	6.0	0	8;4	n	0.19	2	8.5	2	9;8	y	0.09	1	10.0	1	11;9	n	0.00	0	13.5	0	17;10	n	0.00	0	6.5	0	7;6	n	0.00	0	8.0	0	6;10	n	0.00	0	2.0	0	1;3	n	0.00	0	10.5	0	11;10	n	0.14	2	12.0	2	14;10	n	0.00	0	6.0	0	5;7	n	0.00	0	18.5	0	21;16	n	ENSMUSG00000005102.14	Eif2ak4	chr2	protein_coding	eukaryotic translation initiation factor 2 alpha kinase 4
novel_NIR_10393	chr2	118307340	118309405	-	118307340	118309313	5pMXE	ENSMUST00000149615.8	novel	-	-	-	-	-	-	0.60	6	4	6	4	y	1.00	16	0	16	0	y	0.00	0	2	0	2	n	0.94	15	1	15	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.89	8	1	8	1	y	0.00	0	1	0	1	n	0.57	4	3	4	3	y	0.80	8	2	8	2	y	-	-	-	-	-	-	ENSMUSG00000009549.15	Srp14	chr2	protein_coding	signal recognition particle 14
novel_NIR_10394	chr2	118307340	118309859	-	118307340	118309313	5pMXE	ENSMUST00000149615.8	novel	-	-	-	-	-	-	0.20	1	4	1	4	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.75	3	1	3	1	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000009549.15	Srp14	chr2	protein_coding	signal recognition particle 14
novel_NIR_10395	chr2	118309931	118310076	-	118309931	118310031	A5SS	ENSMUST00000138189.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000009549.15	Srp14	chr2	protein_coding	signal recognition particle 14
novel_NIR_10396	chr2	118702028	118703332	+	118702028	118702663	3pMXE	ENSMUST00000141836.2	novel	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.50	3	3	3	3	y	ENSMUSG00000027332.12	Ivd	chr2	protein_coding	isovaleryl coenzyme A dehydrogenase
novel_NIR_10397	chr2	118732419	118746369	+	118730927	118746369	A5SS	ENSMUST00000151162.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000040007.9	Bahd1	chr2	protein_coding	bromo adjacent homology domain containing 1
novel_NIR_10398	chr2	118732419	118746369	+	118732238	118746369	A5SS	ENSMUST00000036578.7	novel	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	23	0	23	n	0.00	0	19	0	19	n	0.00	0	18	0	18	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.17	2	10	2	10	y	ENSMUSG00000040007.9	Bahd1	chr2	protein_coding	bromo adjacent homology domain containing 1
novel_NIR_10399	chr2	118751313	118752086	+	118751313	118752077	A3SS	ENSMUST00000036578.7	novel	0.23	3	10	3	10	y	0.19	4	17	4	17	y	0.23	6	20	6	20	y	0.32	6	13	6	13	y	0.31	11	25	11	25	y	0.10	2	19	2	19	n	0.30	8	19	8	19	y	0.60	9	6	9	6	y	0.28	5	13	5	13	y	0.50	8	8	8	8	y	0.45	5	6	5	6	y	0.50	12	12	12	12	y	ENSMUSG00000040007.9	Bahd1	chr2	protein_coding	bromo adjacent homology domain containing 1
novel_NIR_10400	chr2	118857862	118859789	-	118857868	118859789	A3SS	ENSMUST00000110834.8	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.29	2	5	2	5	y	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000039983.14	Ccdc32	chr2	protein_coding	coiled-coil domain containing 32
novel_NIR_10401	chr2	119010446	119011407	-	119010446;119011161	119010968;119011407	ES	ENSMUST00000141009.2	novel	0.24	2	6.5	2	12;1	y	0.00	0	9.5	0	19;0	n	0.00	0	7.5	0	15;0	n	0.00	0	9.0	0	17;1	n	0.00	0	9.5	0	17;2	n	0.00	0	5.5	0	11;0	n	0.00	0	8.5	0	17;0	n	0.00	0	5.5	0	11;0	n	0.00	0	6.0	0	9;3	n	0.00	0	10.5	0	21;0	n	0.00	0	8.5	0	17;0	n	0.00	0	6.0	0	12;0	n	ENSMUSG00000034278.4	Dnajc17	chr2	protein_coding	DnaJ heat shock protein family (Hsp40) member C17
novel_NIR_10402	chr2	119039568	119040963	+	119040713	119040963	A5SS&ES	ENSMUST00000149036.8	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.25	2	6	2	6	y	0.00	0	3	0	3	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	-	-	-	-	-	-	ENSMUSG00000068580.12	Zfyve19	chr2	protein_coding	zinc finger, FYVE domain containing 19
novel_NIR_10403	chr2	119042495	119045312	+	119042495	119045315	A3SS	ENSMUST00000090174.11	novel	0.02	1	45	1	45	n	0.14	8	49	8	49	n	0.00	0	59	0	59	n	0.07	4	53	4	53	n	0.04	3	68	3	68	n	0.02	1	40	1	40	n	0.06	5	78	5	78	n	0.19	5	21	5	21	y	0.00	0	41	0	41	n	0.03	2	71	2	71	n	0.00	0	47	0	47	n	0.06	4	60	4	60	n	ENSMUSG00000068580.12	Zfyve19	chr2	protein_coding	zinc finger, FYVE domain containing 19
novel_NIR_10404	chr2	119046788	119046895	+	119046788	119047110	A3SS	ENSMUST00000102519.5	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	ENSMUSG00000068580.12	Zfyve19	chr2	protein_coding	zinc finger, FYVE domain containing 19
novel_NIR_10405	chr2	119357683	119359165	-	119355196	119359165	A3SS	ENSMUST00000060009.9	novel	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.18	2	9	2	9	y	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	ENSMUSG00000048647.10	Exd1	chr2	protein_coding	exonuclease 3'-5' domain containing 1
novel_NIR_10406	chr2	119369361	119369604	-	119369356	119369604	A3SS	ENSMUST00000060009.9	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.67	2	1	2	1	y	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	ENSMUSG00000048647.10	Exd1	chr2	protein_coding	exonuclease 3'-5' domain containing 1
novel_NIR_10407	chr2	119383911	119391212	+	119390228	119391212	5pMXE	ENSMUST00000132448.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000014077.14	Chp1	chr2	protein_coding	calcineurin-like EF hand protein 1
novel_NIR_10408	chr2	119491140	119493192	-	119491140	119493074	A5SS	ENSMUST00000154127.2	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000027305.10	Ndufaf1	chr2	protein_coding	NADH:ubiquinone oxidoreductase complex assembly factor 1
novel_NIR_10409	chr2	119491140	119493192	-	119491140	119493240	A5SS	ENSMUST00000131596.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000027305.10	Ndufaf1	chr2	protein_coding	NADH:ubiquinone oxidoreductase complex assembly factor 1
novel_NIR_10410	chr2	119505761	119516852	+	119505761	119521904	A3SS	ENSMUST00000136321.2	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000027304.10	Rtf1	chr2	protein_coding	RTF1, Paf1/RNA polymerase II complex component
novel_NIR_10411	chr2	119505761	119516852	+	119505761	119522597	A3SS	ENSMUST00000028767.9	novel	0.17	4	19	4	19	y	0.00	0	17	0	17	n	0.00	0	23	0	23	n	0.00	0	18	0	18	n	0.00	0	27	0	27	n	0.00	0	13	0	13	n	0.11	2	17	2	17	n	0.07	1	14	1	14	n	0.00	0	8	0	8	n	0.08	2	22	2	22	n	0.00	0	18	0	18	n	0.00	0	18	0	18	n	ENSMUSG00000027304.10	Rtf1	chr2	protein_coding	RTF1, Paf1/RNA polymerase II complex component
novel_NIR_10412	chr2	119703364	119733087	+	119727827	119733087	5pMXE	ENSMUST00000046717.13	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000033943.16	Mga	chr2	protein_coding	MAX gene associated
novel_NIR_10413	chr2	119766147	119769124	+	119766147	119768973	A3SS	ENSMUST00000132054.2	novel	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	1.00	1	0	1	0	n	0.75	6	2	6	2	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000033943.16	Mga	chr2	protein_coding	MAX gene associated
novel_NIR_10414	chr2	119766147	119769124	+	119766147	119769064	A3SS	ENSMUST00000152148.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033943.16	Mga	chr2	protein_coding	MAX gene associated
novel_NIR_10415	chr2	119766147	119769124	+	119766147	119769120	A3SS	ENSMUST00000046717.13	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.67	6	3	6	3	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000033943.16	Mga	chr2	protein_coding	MAX gene associated
novel_NIR_10416	chr2	119852332	119852571	+	119852378	119852571	A5SS	ENSMUST00000066058.8	novel	0.00	0	5	0	5	n	0.22	2	7	2	7	y	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000033902.13	Mapkbp1	chr2	protein_coding	mitogen-activated protein kinase binding protein 1
novel_NIR_10417	chr2	119861353	119862056	+	119861353	119861788	A3SS&ES	ENSMUST00000130176.8	novel	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.08	2	23	2	23	n	0.14	1	6	1	6	n	0.05	1	19	1	19	n	0.00	0	10	0	10	n	0.17	2	10	2	10	y	0.10	1	9	1	9	n	0.00	0	17	0	17	n	0.07	1	14	1	14	n	0.00	0	13	0	13	n	0.05	1	18	1	18	n	ENSMUSG00000098789.8	Jmjd7	chr2	protein_coding	jumonji domain containing 7
novel_NIR_10418	chr2	119861353	119862056	+	119861353;119861883	119861788;119862056	ES	ENSMUST00000044675.5	novel	0.00	0	10.0	0	10;10	n	0.00	0	13.0	0	16;10	n	0.09	2	19.5	2	23;16	n	0.17	1	5.0	1	6;4	n	0.06	1	16.0	1	19;13	n	0.00	0	9.0	0	10;8	n	0.21	2	7.5	2	10;5	y	0.12	1	7.0	1	9;5	n	0.00	0	13.0	0	17;9	n	0.07	1	13.0	1	14;12	n	0.00	0	10.5	0	13;8	n	0.06	1	16.0	1	18;14	n	ENSMUSG00000098789.8	Jmjd7	chr2	protein_coding	jumonji domain containing 7
novel_NIR_10419	chr2	119861883	119862322	+	119861883	119862056	A3SS&ES	ENSMUST00000129685.8	novel	0.09	1	10	1	10	n	0.09	1	10	1	10	n	0.00	0	16	0	16	n	0.20	1	4	1	4	n	0.00	0	13	0	13	n	0.11	1	8	1	8	n	0.17	1	5	1	5	n	0.17	1	5	1	5	n	0.18	2	9	2	9	y	0.25	4	12	4	12	y	0.00	0	8	0	8	n	0.00	0	14	0	14	n	ENSMUSG00000033852.17	Gm28042	chr2	protein_coding	predicted gene, 28042
novel_NIR_10420	chr2	119861883	119862322	+	119861883;119862132	119861983;119862322	ES	ENSMUST00000130176.8	novel	0.25	1	3.0	1	1;5	n	0.33	1	2.0	1	0;4	n	0.00	0	11.5	0	0;23	n	0.14	1	6.0	1	2;10	n	0.00	0	8.0	0	2;14	n	0.12	1	7.0	1	2;12	n	0.25	1	3.0	1	0;6	n	0.15	1	5.5	1	0;11	n	0.44	2	2.5	2	1;4	y	0.47	4	4.5	4	0;9	y	0.00	0	5.5	0	0;11	n	0.00	0	6.0	0	0;12	n	ENSMUSG00000098789.8	Jmjd7	chr2	protein_coding	jumonji domain containing 7
novel_NIR_10421	chr2	119861883	119862322	+	119861883;119862132	119862056;119862322	ES	ENSMUST00000044675.5	novel	0.12	1	7.5	1	10;5	n	0.12	1	7.0	1	10;4	n	0.00	0	19.5	0	16;23	n	0.12	1	7.0	1	4;10	n	0.00	0	13.5	0	13;14	n	0.09	1	10.0	1	8;12	n	0.15	1	5.5	1	5;6	n	0.11	1	8.0	1	5;11	n	0.24	2	6.5	2	9;4	y	0.28	4	10.5	4	12;9	y	0.00	0	9.5	0	8;11	n	0.00	0	13.0	0	14;12	n	ENSMUSG00000098789.8	Jmjd7	chr2	protein_coding	jumonji domain containing 7
novel_NIR_10422	chr2	119866106	119866237	+	119866106	119866286	A3SS	ENSMUST00000162393.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	3	3	3	3	y	ENSMUSG00000033852.17	Gm28042	chr2	protein_coding	predicted gene, 28042
novel_NIR_10423	chr2	120173786	120174606	-	120172557	120174606	A3SS	ENSMUST00000138854.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027291.16	Vps39	chr2	protein_coding	VPS39 HOPS complex subunit
novel_NIR_10424	chr2	120190575	120199725	-	120193421	120199725	A3SS&ES	ENSMUST00000136410.8	novel	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033808.17	Tmem87a	chr2	protein_coding	transmembrane protein 87A
novel_NIR_10425	chr2	120208468	120210072	-	120208473	120210072	A3SS	ENSMUST00000090042.12	novel	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.00	0	28	0	28	n	0.17	3	15	3	15	y	0.00	0	26	0	26	n	0.00	0	12	0	12	n	0.00	0	25	0	25	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.12	2	15	2	15	n	0.08	1	11	1	11	n	0.00	0	10	0	10	n	ENSMUSG00000033808.17	Tmem87a	chr2	protein_coding	transmembrane protein 87A
novel_NIR_10426	chr2	120211309	120211410	-	120211309	120216255	A5SS	ENSMUST00000090042.12	novel	0.00	0	17	0	17	n	0.20	2	8	2	8	y	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.00	0	22	0	22	n	0.00	0	3	0	3	n	0.00	0	20	0	20	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	ENSMUSG00000033808.17	Tmem87a	chr2	protein_coding	transmembrane protein 87A
novel_NIR_10427	chr2	120216372	120218870	-	120216372	120222662	A5SS	ENSMUST00000090042.12	novel	0.05	1	18	1	18	n	0.33	2	4	2	4	y	0.00	0	10	0	10	n	0.00	0	18	0	18	n	0.13	2	13	2	13	n	0.00	0	9	0	9	n	0.00	0	19	0	19	n	0.08	1	12	1	12	n	0.10	1	9	1	9	n	0.11	1	8	1	8	n	0.18	2	9	2	9	n	0.09	1	10	1	10	n	ENSMUSG00000033808.17	Tmem87a	chr2	protein_coding	transmembrane protein 87A
novel_NIR_10428	chr2	120216372;120219020	120218870;120222662	-	120216372	120222662	cassetteExon	ENSMUST00000090042.12	novel	0.05	1.0	18	1;1	18	n	0.20	1.0	4	2;0	4	n	0.05	0.5	10	0;1	10	n	0.00	0.0	18	0;0	18	n	0.19	3.0	13	2;4	13	y	0.00	0.0	9	0;0	9	n	0.00	0.0	19	0;0	19	n	0.08	1.0	12	1;1	12	n	0.05	0.5	9	1;0	9	n	0.16	1.5	8	1;2	8	n	0.18	2.0	9	2;2	9	y	0.09	1.0	10	1;1	10	n	ENSMUSG00000033808.17	Tmem87a	chr2	protein_coding	transmembrane protein 87A
novel_NIR_10429	chr2	120227928	120228922	-	120227928	120233191	A5SS	ENSMUST00000090042.12	novel	0.14	1	6	1	6	n	0.00	0	2	0	2	n	0.00	0	13	0	13	n	0.08	1	12	1	12	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	21	0	21	n	0.00	0	11	0	11	n	0.15	2	11	2	11	y	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.00	0	11	0	11	n	ENSMUSG00000033808.17	Tmem87a	chr2	protein_coding	transmembrane protein 87A
novel_NIR_10430	chr2	120227928	120228922	-	120227928	120234386	A5SS	ENSMUST00000124806.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000033808.17	Tmem87a	chr2	protein_coding	transmembrane protein 87A
novel_NIR_10431	chr2	120227928	120231255	-	120227928	120234386	A5SS	ENSMUST00000124806.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033808.17	Tmem87a	chr2	protein_coding	transmembrane protein 87A
novel_NIR_10432	chr2	120234750	120235454	+	120234750	120236747	A3SS	ENSMUST00000154963.8	novel	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.38	3	5	3	5	y	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.57	4	3	4	3	y	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.33	1	2	1	2	n	-	-	-	-	-	-	ENSMUSG00000062646.13	Ganc	chr2	protein_coding	glucosidase, alpha; neutral C
novel_NIR_10433	chr2	120234750	120235454	+	120234750	120276846	A3SS	ENSMUST00000131523.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000062646.13	Ganc	chr2	protein_coding	glucosidase, alpha; neutral C
novel_NIR_10434	chr2	120243211	120245550	+	120242024	120245550	A5SS	ENSMUST00000143409.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000062646.13	Ganc	chr2	protein_coding	glucosidase, alpha; neutral C
novel_NIR_10435	chr2	120243211	120249839	+	120242024	120249839	A5SS	ENSMUST00000154574.8	novel	0.00	0	18	0	18	n	0.36	5	9	5	9	y	0.00	0	10	0	10	n	0.00	0	27	0	27	n	0.00	0	29	0	29	n	0.00	0	10	0	10	n	0.00	0	19	0	19	n	0.00	0	11	0	11	n	0.00	0	22	0	22	n	0.00	0	32	0	32	n	0.00	0	14	0	14	n	0.04	1	24	1	24	n	ENSMUSG00000062646.13	Ganc	chr2	protein_coding	glucosidase, alpha; neutral C
novel_NIR_10436	chr2	120252685	120253118	+	120252685	120254180	A3SS	ENSMUST00000043755.14	novel	0.11	1	8	1	8	n	0.14	1	6	1	6	n	0.67	2	1	2	1	y	0.11	1	8	1	8	n	0.14	2	12	2	12	n	0.67	4	2	4	2	y	0.00	0	9	0	9	n	0.33	1	2	1	2	n	0.44	4	5	4	5	y	0.20	2	8	2	8	y	0.00	0	5	0	5	n	0.12	2	14	2	14	n	ENSMUSG00000062646.13	Ganc	chr2	protein_coding	glucosidase, alpha; neutral C
novel_NIR_10437	chr2	120343255	120344624	-	120343255;120344169	120344098;120344624	ES	ENSMUST00000055241.13	novel	0.09	5	53.5	5	56;51	n	0.09	4	43.0	4	44;42	n	0.06	8	119.0	8	118;120	n	0.07	4	56.5	4	60;53	n	0.10	9	83.5	9	87;80	n	0.02	1	51.5	1	51;52	n	0.05	5	106.0	5	105;107	n	0.10	6	57.0	6	57;57	n	0.25	12	36.5	12	38;35	y	0.11	8	65.0	8	55;75	n	0.10	5	44.5	5	44;45	n	0.07	5	64.0	5	63;65	n	ENSMUSG00000027288.17	Zfp106	chr2	protein_coding	zinc finger protein 106
novel_NIR_10438	chr2	120362703	120370032	-	120362703	120376324	A5SS	ENSMUST00000135625.8	novel	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	17	0	17	n	0.00	0	1	0	1	n	0.00	0	20	0	20	n	0.00	0	11	0	11	n	0.22	4	14	4	14	y	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	ENSMUSG00000027288.17	Zfp106	chr2	protein_coding	zinc finger protein 106
novel_NIR_10439	chr2	120366160	120370032	-	120366160	120376324	A5SS	ENSMUST00000167241.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027288.17	Zfp106	chr2	protein_coding	zinc finger protein 106
novel_NIR_10440	chr2	120416757	120420956	+	120416757	120421144	A3SS	ENSMUST00000116437.8	novel	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	8	0	8	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027287.15	Snap23	chr2	protein_coding	synaptosomal-associated protein 23
novel_NIR_10441	chr2	120416757	120420956	+	120416757	120421303	A3SS	ENSMUST00000150611.8	novel	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027287.15	Snap23	chr2	protein_coding	synaptosomal-associated protein 23
novel_NIR_10442	chr2	120440139;120441116	120440994;120442819	+	120440139	120442819	cassetteExon	ENSMUST00000110706.2	novel	-	-	-	-	-	-	1.00	3.0	0	4;2	0	y	0.00	0.0	1	0;0	1	n	0.00	0.0	2	0;0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0.0	2	0;0	2	n	ENSMUSG00000027285.14	Haus2	chr2	protein_coding	HAUS augmin-like complex, subunit 2
novel_NIR_10443	chr2	120442911	120448354	+	120442911;120446468	120446336;120448354	ES	ENSMUST00000028741.14	novel	0.17	2	10.0	2	0;20	y	0.00	0	11.5	0	6;17	n	0.00	0	14.5	0	2;27	n	0.00	0	16.0	0	0;32	n	0.00	0	19.0	0	9;29	n	0.00	0	6.5	0	1;12	n	0.00	0	22.5	0	10;35	n	0.00	0	6.0	0	0;12	n	0.00	0	11.5	0	0;23	n	0.00	0	16.0	0	2;30	n	0.00	0	13.5	0	5;22	n	0.00	0	15.5	0	6;25	n	ENSMUSG00000027285.14	Haus2	chr2	protein_coding	HAUS augmin-like complex, subunit 2
novel_NIR_10444	chr2	120496453	120496854	+	120495477	120496854	A5SS	ENSMUST00000180041.9	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	3	0	3	n	ENSMUSG00000033705.18	Stard9	chr2	protein_coding	START domain containing 9
novel_NIR_10445	chr2	120555202	120555373	-	120555207	120555373	A3SS	ENSMUST00000110701.8	novel	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.20	2	8	2	8	y	0.00	0	14	0	14	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	16	0	16	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	ENSMUSG00000027284.17	Cdan1	chr2	protein_coding	congenital dyserythropoietic anemia, type I (human)
novel_NIR_10446	chr2	120653089	120667646	-	120653089	120655723	A5SS&ES	ENSMUST00000085840.11	novel	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.30	3	7	3	7	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000090100.8	Ttbk2	chr2	protein_coding	tau tubulin kinase 2
novel_NIR_10447	chr2	120653089	120667646	-	120653089	120680537	A5SS	ENSMUST00000148285.8	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.75	3	1	3	1	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000027284.17	Cdan1	chr2	protein_coding	congenital dyserythropoietic anemia, type I (human)
novel_NIR_10448	chr2	120653089	120667646	-	120653089;120655796	120655723;120667646	ES	ENSMUST00000141921.2	novel	0.00	0	2.5	0	5;0	n	-	-	-	-	-	-	0.00	0	4.5	0	7;2	n	0.00	0	1.5	0	3;0	n	0.00	0	6.0	0	10;2	n	0.00	0	2.5	0	4;1	n	0.29	1	2.5	1	5;0	n	0.00	0	1.0	0	2;0	n	0.46	3	3.5	3	7;0	y	0.00	0	2.0	0	4;0	n	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	ENSMUSG00000090100.8	Ttbk2	chr2	protein_coding	tau tubulin kinase 2
novel_NIR_10449	chr2	120687404	120692669	+	120681246	120692669	A5SS	ENSMUST00000133643.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000087519.9	AV039307	chr2	lncRNA	expressed sequence AV039307
novel_NIR_10450	chr2	120725643	120726977	-	120725646	120726977	A3SS	ENSMUST00000028728.6	novel	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.14	1	6	1	6	n	0.07	1	14	1	14	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.08	1	12	1	12	n	0.00	0	3	0	3	n	0.33	2	4	2	4	y	ENSMUSG00000027272.6	Ubr1	chr2	protein_coding	ubiquitin protein ligase E3 component n-recognin 1
novel_NIR_10451	chr2	120753940	120754613	-	120751983	120754613	A3SS	ENSMUST00000028728.6	novel	0.43	3	4	3	4	y	1.00	1	0	1	0	n	0.11	1	8	1	8	n	0.00	0	5	0	5	n	0.23	3	10	3	10	y	0.08	1	12	1	12	n	0.00	0	9	0	9	n	0.11	1	8	1	8	n	0.00	0	6	0	6	n	0.08	1	11	1	11	n	0.12	1	7	1	7	n	0.62	5	3	5	3	y	ENSMUSG00000027272.6	Ubr1	chr2	protein_coding	ubiquitin protein ligase E3 component n-recognin 1
novel_NIR_10452	chr2	120817439	120820848	+	120817439	120826887	A3SS	ENSMUST00000139428.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.33	1	2	1	2	n	ENSMUSG00000054484.15	Tmem62	chr2	protein_coding	transmembrane protein 62
novel_NIR_10453	chr2	120959081	120969325	-	120959081	120969107	A5SS	ENSMUST00000099486.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000074890.5	Lcmt2	chr2	protein_coding	leucine carboxyl methyltransferase 2
novel_NIR_10454	chr2	120973690	120975170	+	120973690	120976514	A3SS	ENSMUST00000028702.10	novel	0.00	0	15	0	15	n	0.00	0	11	0	11	n	0.00	0	20	0	20	n	0.00	0	14	0	14	n	0.00	0	28	0	28	n	0.00	0	21	0	21	n	0.03	1	31	1	31	n	0.22	4	14	4	14	y	0.06	1	16	1	16	n	0.00	0	31	0	31	n	0.19	4	17	4	17	y	0.10	3	28	3	28	n	ENSMUSG00000027259.16	Adal	chr2	protein_coding	adenosine deaminase-like
novel_NIR_10455	chr2	120973690	120975170	+	120973690	120980701	A3SS	ENSMUST00000147271.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	3	0	3	0	y	ENSMUSG00000027259.16	Adal	chr2	protein_coding	adenosine deaminase-like
novel_NIR_10456	chr2	120973703	120976514	+	120973703	120980701	A3SS	ENSMUST00000110665.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000027259.16	Adal	chr2	protein_coding	adenosine deaminase-like
novel_NIR_10457	chr2	120975257	120976514	+	120973690	120976514	A5SS	ENSMUST00000028702.10	novel	0.17	3	15	3	15	y	0.27	4	11	4	11	y	0.05	1	20	1	20	n	0.12	2	14	2	14	n	0.00	0	28	0	28	n	0.09	2	21	2	21	n	0.03	1	31	1	31	n	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.06	2	31	2	31	n	0.00	0	17	0	17	n	0.00	0	28	0	28	n	ENSMUSG00000027259.16	Adal	chr2	protein_coding	adenosine deaminase-like
novel_NIR_10458	chr2	121078743	121082349	-	121078771	121082349	A3SS	ENSMUST00000110647.8	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	1.00	1	0	1	0	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	12	0	12	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000043909.17	Trp53bp1	chr2	protein_coding	transformation related protein 53 binding protein 1
novel_NIR_10459	chr2	121078743	121082349	-	121081595	121082349	A3SS&ES	ENSMUST00000129752.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000043909.17	Trp53bp1	chr2	protein_coding	transformation related protein 53 binding protein 1
novel_NIR_10460	chr2	121153857	121162039	-	121152273	121162039	A3SS	ENSMUST00000132114.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000033526.17	Ppip5k1	chr2	protein_coding	diphosphoinositol pentakisphosphate kinase 1
novel_NIR_10461	chr2	121153857	121162039	-	121153857;121158251	121158126;121162039	ES	ENSMUST00000132613.8	novel	0.00	0	4.5	0	0;9	n	0.00	0	0.5	0	0;1	n	0.00	0	4.0	0	0;8	n	0.00	0	1.5	0	0;3	n	-	-	-	-	-	-	0.00	0	1.0	0	0;2	n	0.70	7	3.0	7	0;6	y	0.00	0	2.0	0	0;4	n	-	-	-	-	-	-	0.00	0	4.5	0	0;9	n	0.00	0	1.0	0	0;2	n	0.00	0	1.0	0	0;2	n	ENSMUSG00000033526.17	Ppip5k1	chr2	protein_coding	diphosphoinositol pentakisphosphate kinase 1
novel_NIR_10462	chr2	121153857	121162039	-	121158251	121162039	A3SS&ES	ENSMUST00000052029.10	novel	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.54	7	6	7	6	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000033526.17	Ppip5k1	chr2	protein_coding	diphosphoinositol pentakisphosphate kinase 1
novel_NIR_10463	chr2	121181494	121181764	-	121181494	121185497	A5SS	ENSMUST00000134796.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000033526.17	Ppip5k1	chr2	protein_coding	diphosphoinositol pentakisphosphate kinase 1
novel_NIR_10464	chr2	121181494	121181764	-	121181494	121185517	A5SS	ENSMUST00000134644.8	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.75	3	1	3	1	y	0.33	1	2	1	2	n	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	ENSMUSG00000033526.17	Ppip5k1	chr2	protein_coding	diphosphoinositol pentakisphosphate kinase 1
novel_NIR_10465	chr2	121181494	121181764	-	121181494	121185782	A5SS	ENSMUST00000110625.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	0.33	1	2	1	2	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.40	2	3	2	3	y	-	-	-	-	-	-	ENSMUSG00000033526.17	Ppip5k1	chr2	protein_coding	diphosphoinositol pentakisphosphate kinase 1
novel_NIR_10466	chr2	121224963	121227434	-	121224968	121227434	A3SS	ENSMUST00000154604.8	novel	0.18	2	9	2	9	y	0.00	0	14	0	14	n	0.00	0	35	0	35	n	0.00	0	15	0	15	n	0.00	0	21	0	21	n	0.00	0	12	0	12	n	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.15	2	11	2	11	y	ENSMUSG00000033486.15	Catsper2	chr2	protein_coding	cation channel, sperm associated 2
novel_NIR_10467	chr2	121228369	121228995	-	121228369	121229927	A5SS	ENSMUST00000154604.8	novel	0.67	2	1	2	1	y	0.67	2	1	2	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	2	0	2	n	ENSMUSG00000033486.15	Catsper2	chr2	protein_coding	cation channel, sperm associated 2
novel_NIR_10468	chr2	121228369	121236810	-	121228369	121229927	A5SS&ES	ENSMUST00000154604.8	novel	0.00	0	1	0	1	n	0.80	4	1	4	1	y	0.89	8	1	8	1	y	-	-	-	-	-	-	0.85	11	2	11	2	y	1.00	8	0	8	0	y	0.83	5	1	5	1	y	0.50	4	4	4	4	y	0.33	1	2	1	2	n	1.00	2	0	2	0	y	0.80	4	1	4	1	y	0.75	6	2	6	2	y	ENSMUSG00000033486.15	Catsper2	chr2	protein_coding	cation channel, sperm associated 2
novel_NIR_10469	chr2	121228369	121240619	-	121228369;121229950	121229927;121240619	ES	ENSMUST00000154604.8	novel	0.00	0	1.0	0	1;1	n	0.00	0	0.5	0	1;0	n	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	0.00	0	1.0	0	2;0	n	-	-	-	-	-	-	0.00	0	1.0	0	1;1	n	0.50	2	2.0	2	4;0	y	0.00	0	1.0	0	2;0	n	1.00	2	0.0	2	0;0	y	0.00	0	0.5	0	1;0	n	0.00	0	1.5	0	2;1	n	ENSMUSG00000033486.15	Catsper2	chr2	protein_coding	cation channel, sperm associated 2
novel_NIR_10470	chr2	121230703	121240619	-	121229950	121240619	A3SS	ENSMUST00000154604.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000033486.15	Catsper2	chr2	protein_coding	cation channel, sperm associated 2
novel_NIR_10471	chr2	121242771	121244931	-	121242771	121243897	5pMXE	ENSMUST00000154604.8	novel	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	19	0	19	n	0.00	0	9	0	9	n	0.06	1	16	1	16	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.22	2	7	2	7	y	0.00	0	12	0	12	n	ENSMUSG00000033486.15	Catsper2	chr2	protein_coding	cation channel, sperm associated 2
novel_NIR_10472	chr2	121257183	121262133	+	121255123	121262133	A5SS	ENSMUST00000135079.2	novel	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.20	1	4	1	4	n	1.00	7	0	7	0	y	0.40	4	6	4	6	y	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.43	3	4	3	4	y	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000027248.14	Pdia3	chr2	protein_coding	protein disulfide isomerase associated 3
novel_NIR_10473	chr2	121287772	121288073	+	121287772	121288473	A3SS	ENSMUST00000028677.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	n	-	-	-	-	-	-	1.00	3	0	3	0	n	ENSMUSG00000027245.12	Hypk	chr2	protein_coding	huntingtin interacting protein K
novel_NIR_10474	chr2	121287772;121288181	121288073;121288473	+	121287772	121288473	cassetteExon	ENSMUST00000028677.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	0.5	0	0;1	0	n	-	-	-	-	-	-	1.00	1.0	0	2;0	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2.5	0	3;2	0	y	-	-	-	-	-	-	1.00	1.5	0	3;0	0	n	ENSMUSG00000027245.12	Hypk	chr2	protein_coding	huntingtin interacting protein K
novel_NIR_10475	chr2	121297577	121304315	-	121297577;121300797	121300260;121304315	ES	ENSMUST00000056732.4	novel	0.00	0	5.0	0	0;10	n	0.00	0	1.0	0	0;2	n	0.00	0	7.5	0	0;15	n	0.00	0	4.5	0	0;9	n	0.50	5	5.0	5	0;10	y	0.11	1	8.0	1	0;16	n	0.00	0	5.5	0	0;11	n	0.00	0	5.0	0	0;10	n	0.00	0	4.5	0	0;9	n	0.00	0	5.0	0	0;10	n	0.00	0	4.0	0	1;7	n	0.00	0	6.0	0	0;12	n	ENSMUSG00000048222.4	Mfap1b	chr2	protein_coding	microfibrillar-associated protein 1B
novel_NIR_10476	chr2	121698012	121698971	+	121698012	121729279	A3SS	ENSMUST00000110586.10	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	23	0	23	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.27	3	8	3	8	y	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	ENSMUSG00000060227.16	Golm2	chr2	protein_coding	golgi membrane protein 2
novel_NIR_10477	chr2	121823913	121827913	+	121823913	121824151	3pMXE	ENSMUST00000128883.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000033411.17	Ctdspl2	chr2	protein_coding	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
novel_NIR_10478	chr2	121884541	121885847	-	121884541;121885012	121884861;121885847	ES	ENSMUST00000036450.8	novel	0.00	0	1.0	0	0;2	n	0.00	0	1.0	0	1;1	n	0.00	0	1.5	0	0;3	n	0.00	0	2.0	0	2;2	n	0.80	2	0.5	2	1;0	y	0.00	0	1.0	0	2;0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2.0	0	2;2	n	0.00	0	1.5	0	3;0	n	0.00	0	3.0	0	4;2	n	0.00	0	0.5	0	0;1	n	ENSMUSG00000033396.14	Spg11	chr2	protein_coding	SPG11, spatacsin vesicle trafficking associated
novel_NIR_10479	chr2	121890318	121890689	-	121890318	121890652	A5SS	ENSMUST00000036450.8	novel	0.12	2	15	2	15	n	0.13	4	27	4	27	n	0.11	3	25	3	25	n	0.00	0	21	0	21	n	0.00	0	29	0	29	n	0.00	0	22	0	22	n	0.00	0	20	0	20	n	0.00	0	15	0	15	n	0.00	0	23	0	23	n	0.12	3	22	3	22	n	0.00	0	12	0	12	n	0.15	6	33	6	33	y	ENSMUSG00000033396.14	Spg11	chr2	protein_coding	SPG11, spatacsin vesicle trafficking associated
novel_NIR_10480	chr2	121978285	121998036	+	121991377	121998036	5pMXE	ENSMUST00000036089.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033368.9	Trim69	chr2	protein_coding	tripartite motif-containing 69
novel_NIR_10481	chr2	122581078	122584509	+	122580773	122584509	A5SS	ENSMUST00000129690.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000005804.15	Bloc1s6	chr2	protein_coding	biogenesis of lysosomal organelles complex-1, subunit 6, pallidin
novel_NIR_10482	chr2	122607359	122634270	+	122607359	122609806	3pMXE	ENSMUST00000141698.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000005803.15	Sqor	chr2	protein_coding	sulfide quinone oxidoreductase
novel_NIR_10483	chr2	122607359	122639958	+	122607359	122609806	3pMXE	ENSMUST00000141698.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000005803.15	Sqor	chr2	protein_coding	sulfide quinone oxidoreductase
novel_NIR_10484	chr2	122607613	122626864	+	122607592	122626864	A5SS	ENSMUST00000124460.2	novel	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.17	2	10	2	10	y	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.17	3	15	3	15	y	ENSMUSG00000005803.15	Sqor	chr2	protein_coding	sulfide quinone oxidoreductase
novel_NIR_10485	chr2	122607613	122626864	+	122608710	122626864	A5SS&ES	ENSMUST00000147475.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000005803.15	Sqor	chr2	protein_coding	sulfide quinone oxidoreductase
novel_NIR_10486	chr2	122607613	122626864	+	122613668	122626864	5pMXE	ENSMUST00000176999.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000005803.15	Sqor	chr2	protein_coding	sulfide quinone oxidoreductase
novel_NIR_10487	chr2	122607613	122626864	+	122624318	122626864	5pMXE	ENSMUST00000110506.9	novel	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	ENSMUSG00000005803.15	Sqor	chr2	protein_coding	sulfide quinone oxidoreductase
novel_NIR_10488	chr2	12391490	12393151	-	12391490	12410671	A5SS	ENSMUST00000124603.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000026767.13	Mindy3	chr2	protein_coding	MINDY lysine 48 deubiquitinase 3
novel_NIR_10489	chr2	12391490	12393151	-	12391490	12423970	A5SS	ENSMUST00000129993.3	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000026767.13	Mindy3	chr2	protein_coding	MINDY lysine 48 deubiquitinase 3
novel_NIR_10490	chr2	12405913	12408809	-	12404948	12408809	A3SS	ENSMUST00000155530.8	novel	0.50	1	1	1	1	n	0.75	3	1	3	1	y	1.00	1	0	1	0	n	0.40	2	3	2	3	y	0.86	6	1	6	1	y	1.00	1	0	1	0	n	0.75	6	2	6	2	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.57	4	3	4	3	y	0.50	1	1	1	1	n	0.00	0	3	0	3	n	ENSMUSG00000026767.13	Mindy3	chr2	protein_coding	MINDY lysine 48 deubiquitinase 3
novel_NIR_10491	chr2	125156887	125157279	-	125156720	125157279	A3SS	ENSMUST00000028633.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	ENSMUSG00000027204.14	Fbn1	chr2	protein_coding	fibrillin 1
novel_NIR_10492	chr2	125397744	125408129	-	125406317	125408129	3pMXE	ENSMUST00000089776.3	novel	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.36	4	7	4	7	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	ENSMUSG00000068394.5	Cep152	chr2	protein_coding	centrosomal protein 152
novel_NIR_10493	chr2	125406314	125408129	-	125406317	125408129	A3SS	ENSMUST00000089776.3	novel	0.00	0	8	0	8	n	0.43	3	4	3	4	y	0.22	2	7	2	7	y	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.38	3	5	3	5	y	1.00	4	0	4	0	y	0.00	0	4	0	4	n	0.40	2	3	2	3	y	ENSMUSG00000068394.5	Cep152	chr2	protein_coding	centrosomal protein 152
novel_NIR_10494	chr2	125456348	125460293	-	125456351	125460293	A3SS	ENSMUST00000089776.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000068394.5	Cep152	chr2	protein_coding	centrosomal protein 152
novel_NIR_10495	chr2	125684616	125686730	-	125684679	125686730	3pMXE	ENSMUST00000139343.2	novel	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.80	8	2	8	2	y	0.25	1	3	1	3	n	ENSMUSG00000027206.14	Cops2	chr2	protein_coding	COP9 signalosome subunit 2
novel_NIR_10496	chr2	125994497	125996466	+	125994134	125996466	A5SS	ENSMUST00000170908.8	novel	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.58	11	8	11	8	y	0.18	2	9	2	9	y	0.35	7	13	7	13	y	0.47	7	8	7	8	y	0.12	2	15	2	15	n	0.61	11	7	11	7	y	0.33	7	14	7	14	y	0.40	6	9	6	9	y	0.00	0	3	0	3	n	0.30	7	16	7	16	y	ENSMUSG00000023330.13	Dtwd1	chr2	protein_coding	DTW domain containing 1
novel_NIR_10497	chr2	125996780	126001690	+	125996780;126000473	126000330;126001690	ES	ENSMUST00000170908.8	novel	0.15	4	23.0	4	22;24	y	0.00	0	20.0	0	18;22	n	0.00	0	20.5	0	21;20	n	0.24	6	18.5	6	18;19	y	0.00	0	32.5	0	34;31	n	0.05	1	19.0	1	20;18	n	0.00	0	27.0	0	25;29	n	0.00	0	26.5	0	32;21	n	0.00	0	14.0	0	11;17	n	0.07	2	28.5	2	26;31	n	0.00	0	13.5	0	12;15	n	0.21	6	23.0	6	19;27	y	ENSMUSG00000023330.13	Dtwd1	chr2	protein_coding	DTW domain containing 1
novel_NIR_10498	chr2	126395552	126403530	+	126395552	126395702	A3SS&ES	ENSMUST00000126249.2	novel	0.80	32	8	32	8	y	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.95	108	6	108	6	y	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.86	30	5	30	5	y	ENSMUSG00000027359.17	Slc27a2	chr2	protein_coding	solute carrier family 27 (fatty acid transporter), member 2
novel_NIR_10499	chr2	126395552	126409667	+	126406774	126409667	5pMXE	ENSMUST00000150947.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000027359.17	Slc27a2	chr2	protein_coding	solute carrier family 27 (fatty acid transporter), member 2
novel_NIR_10500	chr2	126401231	126403457	+	126395833	126403457	A5SS	ENSMUST00000126249.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027359.17	Slc27a2	chr2	protein_coding	solute carrier family 27 (fatty acid transporter), member 2
novel_NIR_10501	chr2	126401231	126403457	+	126398138	126403457	A5SS	ENSMUST00000141482.3	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	4	0	4	n	-	-	-	-	-	-	ENSMUSG00000027359.17	Slc27a2	chr2	protein_coding	solute carrier family 27 (fatty acid transporter), member 2
novel_NIR_10502	chr2	126406752	126409667	+	126406774	126409667	A5SS	ENSMUST00000150947.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	88	0	88	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	80	0	80	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027359.17	Slc27a2	chr2	protein_coding	solute carrier family 27 (fatty acid transporter), member 2
novel_NIR_10503	chr2	126406755	126409667	+	126406774	126409667	A5SS	ENSMUST00000150947.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	12	0	12	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	ENSMUSG00000027359.17	Slc27a2	chr2	protein_coding	solute carrier family 27 (fatty acid transporter), member 2
novel_NIR_10504	chr2	126436858	126439310	-	126436858	126439791	A5SS	ENSMUST00000028838.5	novel	0.00	0	12	0	12	n	0.33	2	4	2	4	y	0.00	0	35	0	35	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000027360.6	Hdc	chr2	protein_coding	histidine decarboxylase
novel_NIR_10505	chr2	126472302	126481130	-	126472302	126481149	A5SS	ENSMUST00000110425.9	novel	0.00	0	23	0	23	n	0.00	0	11	0	11	n	0.03	1	35	1	35	n	0.14	3	19	3	19	n	0.04	1	25	1	25	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	16	0	16	n	0.00	0	14	0	14	n	0.22	4	14	4	14	y	ENSMUSG00000027361.16	Gabpb1	chr2	protein_coding	GA repeat binding protein, beta 1
novel_NIR_10506	chr2	126850820	126853250	+	126850820	126853715	A3SS	ENSMUST00000149254.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000001998.16	Ap4e1	chr2	protein_coding	adaptor-related protein complex AP-4, epsilon 1
novel_NIR_10507	chr2	126853607	126853711	+	126850820	126853711	A5SS	ENSMUST00000129859.2	novel	0.67	4	2	4	2	y	1.00	1	0	1	0	n	0.14	1	6	1	6	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.25	2	6	2	6	y	0.00	0	1	0	1	n	0.80	4	1	4	1	y	0.67	2	1	2	1	y	0.00	0	2	0	2	n	ENSMUSG00000001998.16	Ap4e1	chr2	protein_coding	adaptor-related protein complex AP-4, epsilon 1
novel_NIR_10508	chr2	126853607	126853711	+	126851795	126853711	A5SS	ENSMUST00000110393.2	novel	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000001998.16	Ap4e1	chr2	protein_coding	adaptor-related protein complex AP-4, epsilon 1
novel_NIR_10509	chr2	126861279	126870065	+	126861279	126870092	A3SS	ENSMUST00000149254.9	novel	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.00	0	14	0	14	n	0.17	1	5	1	5	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	ENSMUSG00000001998.16	Ap4e1	chr2	protein_coding	adaptor-related protein complex AP-4, epsilon 1
novel_NIR_10510	chr2	126870213	126876964	+	126870213;126875609	126875450;126876964	ES	ENSMUST00000149254.9	novel	0.00	0	4.5	0	4;5	n	0.00	0	2.0	0	3;1	n	0.00	0	10.5	0	14;7	n	0.00	0	5.0	0	7;3	n	0.00	0	10.0	0	6;14	n	0.00	0	5.5	0	4;7	n	0.29	3	7.5	3	9;6	y	0.00	0	3.0	0	2;4	n	0.00	0	5.0	0	5;5	n	0.00	0	3.0	0	2;4	n	0.00	0	3.0	0	0;6	n	0.00	0	7.0	0	7;7	n	ENSMUSG00000001998.16	Ap4e1	chr2	protein_coding	adaptor-related protein complex AP-4, epsilon 1
novel_NIR_10511	chr2	126877130	126879614	+	126877130	126879706	A3SS	ENSMUST00000110394.8	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.32	7	15	7	15	y	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	13	0	13	n	ENSMUSG00000001998.16	Ap4e1	chr2	protein_coding	adaptor-related protein complex AP-4, epsilon 1
novel_NIR_10512	chr2	126877130	126879614	+	126877130	126885341	A3SS	ENSMUST00000177372.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000001998.16	Ap4e1	chr2	protein_coding	adaptor-related protein complex AP-4, epsilon 1
novel_NIR_10513	chr2	126879779	126888068	+	126885676	126888068	A5SS&ES	ENSMUST00000177372.8	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.17	2	10	2	10	y	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.00	0	8	0	8	n	ENSMUSG00000001998.16	Ap4e1	chr2	protein_coding	adaptor-related protein complex AP-4, epsilon 1
novel_NIR_10514	chr2	126885463	126888068	+	126885463	126885567	3pMXE	ENSMUST00000110394.8	novel	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.17	2	10	2	10	y	ENSMUSG00000001998.16	Ap4e1	chr2	protein_coding	adaptor-related protein complex AP-4, epsilon 1
novel_NIR_10515	chr2	126885463	126888068	+	126885463;126885676	126885567;126888068	ES	ENSMUST00000002063.15	novel	0.00	0	1.0	0	2;0	n	0.00	0	5.0	0	6;4	n	0.00	0	10.5	0	9;12	n	0.00	0	8.0	0	6;10	n	0.00	0	7.0	0	3;11	n	0.00	0	3.5	0	3;4	n	0.00	0	6.0	0	7;5	n	0.00	0	7.5	0	8;7	n	0.20	1	4.0	1	4;4	n	0.00	0	3.0	0	3;3	n	0.00	0	2.0	0	0;4	n	0.18	2	9.0	2	10;8	y	ENSMUSG00000001998.16	Ap4e1	chr2	protein_coding	adaptor-related protein complex AP-4, epsilon 1
novel_NIR_10516	chr2	126885463	126888068	+	126885463;126885676	126885599;126888068	ES	ENSMUST00000175663.8	novel	-	-	-	-	-	-	0.00	0	2.0	0	0;4	n	0.00	0	6.0	0	0;12	n	0.00	0	5.0	0	0;10	n	0.00	0	5.5	0	0;11	n	0.00	0	2.0	0	0;4	n	0.00	0	2.5	0	0;5	n	0.00	0	3.5	0	0;7	n	0.33	1	2.0	1	0;4	n	0.00	0	1.5	0	0;3	n	0.00	0	2.0	0	0;4	n	0.33	2	4.0	2	0;8	y	ENSMUSG00000001998.16	Ap4e1	chr2	protein_coding	adaptor-related protein complex AP-4, epsilon 1
novel_NIR_10517	chr2	126892097	126894100	+	126891482	126894100	A5SS	ENSMUST00000002063.15	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.14	3	18	3	18	n	0.27	3	8	3	8	y	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.25	1	3	1	3	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	ENSMUSG00000001998.16	Ap4e1	chr2	protein_coding	adaptor-related protein complex AP-4, epsilon 1
novel_NIR_10518	chr2	126892097	126894100	+	126892932	126894100	A5SS&ES	ENSMUST00000142740.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000001998.16	Ap4e1	chr2	protein_coding	adaptor-related protein complex AP-4, epsilon 1
novel_NIR_10519	chr2	126898224	126902295	+	126898224	126902182	A3SS	ENSMUST00000002063.15	novel	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	23	0	23	n	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.25	2	6	2	6	y	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	ENSMUSG00000001998.16	Ap4e1	chr2	protein_coding	adaptor-related protein complex AP-4, epsilon 1
novel_NIR_10520	chr2	126912645	126922450	+	126920997	126922450	A5SS&ES	ENSMUST00000135529.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000001999.16	Blvra	chr2	protein_coding	biliverdin reductase A
novel_NIR_10521	chr2	126912645	126922450	+	126922298	126922450	5pMXE	ENSMUST00000142737.3	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.17	1	5	1	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000001999.16	Blvra	chr2	protein_coding	biliverdin reductase A
novel_NIR_10522	chr2	126912650	126916019	+	126912650	126920850	A3SS	ENSMUST00000135529.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000001999.16	Blvra	chr2	protein_coding	biliverdin reductase A
novel_NIR_10523	chr2	126912650	126916019	+	126912650	126922450	A3SS	ENSMUST00000142861.2	novel	0.17	2	10	2	10	y	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	22	0	22	n	0.00	0	22	0	22	n	0.00	0	10	0	10	n	0.00	0	28	0	28	n	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.00	0	24	0	24	n	0.00	0	14	0	14	n	0.00	0	19	0	19	n	ENSMUSG00000001999.16	Blvra	chr2	protein_coding	biliverdin reductase A
novel_NIR_10524	chr2	126916165	126920850	+	126912650	126920850	A5SS	ENSMUST00000135529.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000001999.16	Blvra	chr2	protein_coding	biliverdin reductase A
novel_NIR_10525	chr2	127090004	127090346	+	127090004	127097925	A3SS	ENSMUST00000174288.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034850.16	Tmem127	chr2	protein_coding	transmembrane protein 127
novel_NIR_10526	chr2	127422903	127423396	-	127422943	127423396	A3SS	ENSMUST00000110366.8	novel	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.09	1	10	1	10	n	ENSMUSG00000034800.16	Zfp661	chr2	protein_coding	zinc finger protein 661
novel_NIR_10527	chr2	127610175	127611535	-	127610178	127611535	A3SS	ENSMUST00000028857.14	novel	0.00	0	9	0	9	n	0.33	1	2	1	2	n	0.20	2	8	2	8	y	0.08	1	11	1	11	n	0.40	6	9	6	9	y	0.00	0	9	0	9	n	0.33	2	4	2	4	y	1.00	4	0	4	0	y	0.00	0	8	0	8	n	0.44	4	5	4	5	y	0.00	0	6	0	6	n	0.00	0	12	0	12	n	ENSMUSG00000027378.17	Nphp1	chr2	protein_coding	nephronophthisis 1 (juvenile) homolog (human)
novel_NIR_10528	chr2	128520204	128521460	-	128520204	128521440	A5SS	ENSMUST00000014499.10	novel	0.00	0	13	0	13	n	0.07	1	13	1	13	n	0.00	0	29	0	29	n	0.00	0	22	0	22	n	0.00	0	40	0	40	n	0.00	0	14	0	14	n	0.04	1	26	1	26	n	0.07	2	27	2	27	n	0.15	2	11	2	11	y	0.00	0	24	0	24	n	0.00	0	13	0	13	n	0.08	3	33	3	33	n	ENSMUSG00000014355.11	Anapc1	chr2	protein_coding	anaphase promoting complex subunit 1
novel_NIR_10529	chr2	128613420	128614156	+	128613420	128618206	A3SS	ENSMUST00000014505.5	novel	0.00	0	11	0	11	n	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.06	1	16	1	16	n	0.25	3	9	3	9	y	0.00	0	16	0	16	n	ENSMUSG00000014361.6	Mertk	chr2	protein_coding	MER proto-oncogene tyrosine kinase
novel_NIR_10530	chr2	128775252	128777244	-	128775252	128777232	A5SS	ENSMUST00000028866.9	novel	0.10	1	9	1	9	n	0.29	2	5	2	5	y	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.14	1	6	1	6	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.31	4	9	4	9	y	ENSMUSG00000027387.12	Zc3h8	chr2	protein_coding	zinc finger CCCH type containing 8
novel_NIR_10531	chr2	128858513	128860611	+	128859112	128860611	5pMXE	ENSMUST00000135186.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000090248.2	Gm14027	chr2	lncRNA	predicted gene 14027
novel_NIR_10532	chr2	128860776	128863204	+	128860776	128863221	A3SS	ENSMUST00000135186.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000090248.2	Gm14027	chr2	lncRNA	predicted gene 14027
novel_NIR_10533	chr2	128924163	128924306	+	128924163	128930914	A3SS	ENSMUST00000035812.14	novel	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	20	0	20	n	0.50	2	2	2	2	y	0.00	0	12	0	12	n	ENSMUSG00000027394.14	Ttl	chr2	protein_coding	tubulin tyrosine ligase
novel_NIR_10534	chr2	128955647	128957559	+	128955702	128957559	A5SS	ENSMUST00000103205.11	novel	0.07	2	25	2	25	n	0.00	0	15	0	15	n	0.12	3	21	3	21	n	0.19	6	25	6	25	y	0.11	3	25	3	25	n	0.10	2	18	2	18	n	0.00	0	26	0	26	n	0.00	0	25	0	25	n	0.00	0	22	0	22	n	0.06	2	30	2	30	n	0.00	0	26	0	26	n	0.03	1	31	1	31	n	ENSMUSG00000027395.16	Polr1b	chr2	protein_coding	polymerase (RNA) I polypeptide B
novel_NIR_10535	chr2	129074740	129076865	+	129075705	129076865	A5SS	ENSMUST00000143346.8	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000056738.12	A730036I17Rik	chr2	lncRNA	RIKEN cDNA A730036I17 gene
novel_NIR_10536	chr2	129139312	129140684	+	129139322	129140684	A5SS	ENSMUST00000144178.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000085498.2	Gm14023	chr2	lncRNA	predicted gene 14023
novel_NIR_10537	chr2	129140757	129146606	+	129140757	129147074	A3SS	ENSMUST00000144178.2	novel	0.43	3	4	3	4	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	6	0	6	n	0.29	2	5	2	5	y	1.00	3	0	3	0	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.14	1	6	1	6	n	-	-	-	-	-	-	0.33	1	2	1	2	n	ENSMUSG00000085498.2	Gm14023	chr2	lncRNA	predicted gene 14023
novel_NIR_10538	chr2	129140757;129146731	129146606;129147074	+	129140757	129147074	cassetteExon	ENSMUST00000144178.2	novel	0.38	2.5	4	3;2	4	y	0.20	0.5	2	0;1	2	n	0.20	0.5	2	1;0	2	n	0.20	1.5	6	0;3	6	n	0.17	1.0	5	2;0	5	n	1.00	2.0	0	3;1	0	n	0.38	2.5	4	0;5	4	n	0.00	0.0	2	0;0	2	n	0.11	0.5	4	1;0	4	n	0.25	2.0	6	1;3	6	n	1.00	0.5	0	0;1	0	n	0.43	1.5	2	1;2	2	n	ENSMUSG00000085498.2	Gm14023	chr2	lncRNA	predicted gene 14023
novel_NIR_10539	chr2	129146731	129147074	+	129140757	129147074	A5SS	ENSMUST00000144178.2	novel	0.33	2	4	2	4	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.33	3	6	3	6	y	0.00	0	5	0	5	n	1.00	1	0	1	0	n	0.56	5	4	5	4	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.33	3	6	3	6	n	1.00	1	0	1	0	n	0.50	2	2	2	2	n	ENSMUSG00000085498.2	Gm14023	chr2	lncRNA	predicted gene 14023
novel_NIR_10540	chr2	129147241	129148039	+	129147241	129148080	A3SS	ENSMUST00000144178.2	novel	-	-	-	-	-	-	0.70	7	3	7	3	y	1.00	2	0	2	0	y	1.00	6	0	6	0	y	0.45	5	6	5	6	y	0.83	5	1	5	1	y	0.42	5	7	5	7	y	1.00	5	0	5	0	y	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.50	3	3	3	3	y	0.25	1	3	1	3	n	ENSMUSG00000085498.2	Gm14023	chr2	lncRNA	predicted gene 14023
novel_NIR_10541	chr2	129151029	129151375	-	129151029	129151841	A5SS	ENSMUST00000028882.2	novel	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000027399.2	Il1a	chr2	protein_coding	interleukin 1 alpha
novel_NIR_10542	chr2	12929009	12967996	+	12929009	12985104	A3SS	ENSMUST00000150283.2	novel	0.15	2	11	2	11	y	0.17	1	5	1	5	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.22	2	7	2	7	y	ENSMUSG00000026730.13	Pter	chr2	protein_coding	phosphotriesterase related
novel_NIR_10543	chr2	12929009	12976237	+	12929009	12985104	A3SS	ENSMUST00000150283.2	novel	0.21	3	11	3	11	y	0.29	2	5	2	5	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.20	2	8	2	8	y	0.00	0	1	0	1	n	1.00	3	0	3	0	y	0.33	1	2	1	2	n	0.40	2	3	2	3	y	0.17	1	5	1	5	n	0.25	3	9	3	9	y	0.30	3	7	3	7	y	ENSMUSG00000026730.13	Pter	chr2	protein_coding	phosphotriesterase related
novel_NIR_10544	chr2	130019086	130019960	-	130019086	130020654	A5SS	ENSMUST00020183458.1	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027404.17	Snrpb	chr2	protein_coding	small nuclear ribonucleoprotein B
novel_NIR_10545	chr2	130121357	130121507	-	130121357	130121476	A5SS	ENSMUST00000184538.2	novel	0.00	0	16	0	16	n	0.00	0	29	0	29	n	0.00	0	15	0	15	n	0.00	0	15	0	15	n	0.00	0	19	0	19	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.22	5	18	5	18	y	0.00	0	42	0	42	n	0.00	0	43	0	43	n	0.00	0	33	0	33	n	ENSMUSG00000027406.14	Idh3b	chr2	protein_coding	isocitrate dehydrogenase 3 (NAD+) beta
novel_NIR_10546	chr2	130121357	130121507	-	130121357	130122183	A5SS	ENSMUST00000239288.2	novel	0.00	0	8	0	8	n	0.00	0	15	0	15	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	87	0	87	n	0.00	0	1	0	1	n	0.71	5	2	5	2	y	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	ENSMUSG00000027406.14	Idh3b	chr2	protein_coding	isocitrate dehydrogenase 3 (NAD+) beta
novel_NIR_10547	chr2	130204351	130207219	+	130204351	130207380	A3SS	ENSMUST00000110288.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000053552.15	Ebf4	chr2	protein_coding	early B cell factor 4
novel_NIR_10548	chr2	130204351	130207219	+	130204351	130207496	A3SS	ENSMUST00000140169.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000053552.15	Ebf4	chr2	protein_coding	early B cell factor 4
novel_NIR_10549	chr2	130261628	130263810	-	130261253	130263810	A3SS	ENSMUST00000131561.8	novel	0.33	1	2	1	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	7	0	7	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000037773.15	Pced1a	chr2	protein_coding	PC-esterase domain containing 1A
novel_NIR_10550	chr2	130265472	130265769	-	130265472	130266413	A5SS	ENSMUST00000110277.2	novel	0.17	1	5	1	5	n	0.33	2	4	2	4	y	0.29	2	5	2	5	y	0.45	5	6	5	6	y	0.00	0	3	0	3	n	0.56	5	4	5	4	y	0.22	2	7	2	7	y	0.50	4	4	4	4	y	0.75	3	1	3	1	y	0.33	1	2	1	2	n	0.33	3	6	3	6	y	0.00	0	2	0	2	n	ENSMUSG00000037773.15	Pced1a	chr2	protein_coding	PC-esterase domain containing 1A
novel_NIR_10551	chr2	130280604	130280788	+	130280604	130280966	A3SS	ENSMUST00000128994.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000027411.18	Vps16	chr2	protein_coding	VSP16 CORVET/HOPS core subunit
novel_NIR_10552	chr2	130282271	130282372	+	130282282	130282372	A5SS	ENSMUST00000028900.11	novel	0.00	0	29	0	29	n	0.22	4	14	4	14	y	0.00	0	24	0	24	n	0.00	0	28	0	28	n	0.00	0	38	0	38	n	0.00	0	21	0	21	n	0.06	2	32	2	32	n	0.04	1	22	1	22	n	0.00	0	20	0	20	n	0.02	1	45	1	45	n	0.00	0	37	0	37	n	0.09	3	29	3	29	n	ENSMUSG00000027411.18	Vps16	chr2	protein_coding	VSP16 CORVET/HOPS core subunit
novel_NIR_10553	chr2	130298390	130345394	+	130292478	130345394	A5SS	ENSMUST00000028769.14	novel	0.15	2	11	2	11	y	0.00	0	4	0	4	n	0.00	0	19	0	19	n	0.00	0	27	0	27	n	0.03	1	39	1	39	n	0.00	0	28	0	28	n	0.00	0	17	0	17	n	0.00	0	20	0	20	n	0.00	0	18	0	18	n	0.00	0	14	0	14	n	0.10	2	18	2	18	n	0.00	0	16	0	16	n	ENSMUSG00000027303.19	Ptpra	chr2	protein_coding	protein tyrosine phosphatase, receptor type, A
novel_NIR_10554	chr2	130433934	130437012	-	130433934	130439218	A5SS	ENSMUST00000028761.5	novel	0.11	1	8	1	8	n	0.50	3	3	3	3	n	0.00	0	10	0	10	n	0.06	1	16	1	16	n	0.08	1	11	1	11	n	0.08	1	11	1	11	n	0.24	5	16	5	16	n	0.00	0	6	0	6	n	0.25	2	6	2	6	y	0.26	5	14	5	14	y	0.45	5	6	5	6	n	0.08	1	12	1	12	n	ENSMUSG00000027300.11	Ubox5	chr2	protein_coding	U box domain containing 5
novel_NIR_10555	chr2	130433934;130437073	130437012;130439218	-	130433934	130439218	cassetteExon	ENSMUST00000028761.5	novel	0.06	0.5	8	1;0	8	n	0.45	2.5	3	3;2	3	y	0.00	0.0	10	0;0	10	n	0.06	1.0	16	1;1	16	n	0.08	1.0	11	1;1	11	n	0.08	1.0	11	1;1	11	n	0.16	3.0	16	5;1	16	n	0.00	0.0	6	0;0	6	n	0.14	1.0	6	2;0	6	n	0.15	2.5	14	5;0	14	n	0.33	3.0	6	5;1	6	n	0.11	1.5	12	1;2	12	n	ENSMUSG00000027300.11	Ubox5	chr2	protein_coding	U box domain containing 5
novel_NIR_10556	chr2	130446546;130470555	130470409;130471836	-	130446546	130471836	cassetteExon	ENSMUST00000028761.5	novel	0.60	3.0	2	2;4	2	y	0.71	2.5	1	0;5	1	n	0.14	0.5	3	1;0	3	n	0.29	2.0	5	3;1	5	n	0.57	6.5	5	6;7	5	y	0.50	2.0	2	1;3	2	n	0.67	4.0	2	0;8	2	n	0.53	4.5	4	3;6	4	y	0.33	2.5	5	1;4	5	n	0.43	4.5	6	0;9	6	n	0.50	2.0	2	1;3	2	n	0.41	3.5	5	4;3	5	y	ENSMUSG00000027300.11	Ubox5	chr2	protein_coding	U box domain containing 5
novel_NIR_10557	chr2	130446546;130470555	130470409;130471836	-	130446546;130458662	130456809;130471836	MXE	ENSMUST00000140581.3	novel	0.75	3.0	1.0	2;4	0;2	y	0.62	2.5	1.5	0;5	2;1	n	0.33	0.5	1.0	1;0	0;2	n	0.50	2.0	2.0	3;1	0;4	n	0.81	6.5	1.5	6;7	0;3	y	0.44	2.0	2.5	1;3	2;3	n	0.80	4.0	1.0	0;8	2;0	n	0.82	4.5	1.0	3;6	0;2	y	0.50	2.5	2.5	1;4	0;5	n	0.75	4.5	1.5	0;9	0;3	n	0.57	2.0	1.5	1;3	2;1	n	1.00	3.5	0.0	4;3	0;0	y	ENSMUSG00000027300.11	Ubox5	chr2	protein_coding	U box domain containing 5
novel_NIR_10558	chr2	130458662	130470409	-	130458662	130471836	A5SS	ENSMUST00000140581.3	novel	0.67	4	2	4	2	n	0.67	2	1	2	1	n	0.50	2	2	2	2	y	0.50	4	4	4	4	n	0.62	5	3	5	3	n	0.25	1	3	1	3	n	1.00	4	0	4	0	n	0.67	4	2	4	2	n	0.00	0	5	0	5	n	0.62	5	3	5	3	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	ENSMUSG00000027300.11	Ubox5	chr2	protein_coding	U box domain containing 5
novel_NIR_10559	chr2	130458662;130470555	130470409;130471836	-	130458662	130471836	cassetteExon	ENSMUST00000140581.3	novel	0.67	4.0	2	4;4	2	y	0.78	3.5	1	2;5	1	y	0.33	1.0	2	2;0	2	n	0.38	2.5	4	4;1	4	n	0.67	6.0	3	5;7	3	y	0.40	2.0	3	1;3	3	n	1.00	6.0	0	4;8	0	y	0.71	5.0	2	4;6	2	y	0.29	2.0	5	0;4	5	n	0.70	7.0	3	5;9	3	y	0.60	1.5	1	0;3	1	n	1.00	2.0	0	1;3	0	n	ENSMUSG00000027300.11	Ubox5	chr2	protein_coding	U box domain containing 5
novel_NIR_10560	chr2	130470555	130471836	-	130446546	130471836	A3SS	ENSMUST00000028761.5	novel	0.67	4	2	4	2	n	0.83	5	1	5	1	y	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.58	7	5	7	5	n	0.60	3	2	3	2	n	0.80	8	2	8	2	y	0.60	6	4	6	4	n	0.44	4	5	4	5	n	0.60	9	6	9	6	y	0.60	3	2	3	2	n	0.38	3	5	3	5	n	ENSMUSG00000027300.11	Ubox5	chr2	protein_coding	U box domain containing 5
novel_NIR_10561	chr2	130470555	130471836	-	130458662	130471836	A3SS	ENSMUST00000110262.3	novel	0.67	4	2	4	2	n	0.83	5	1	5	1	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.70	7	3	7	3	n	0.50	3	3	3	3	n	1.00	8	0	8	0	n	0.75	6	2	6	2	n	0.44	4	5	4	5	y	0.75	9	3	9	3	n	0.75	3	1	3	1	y	1.00	3	0	3	0	n	ENSMUSG00000079043.4	Fastkd5	chr2	protein_coding	FAST kinase domains 5
novel_NIR_10562	chr2	130477384	130477756	-	130477384	130477693	A5SS	ENSMUST00000089561.10	novel	0.02	1	41	1	41	n	0.04	1	22	1	22	n	0.08	1	12	1	12	n	0.09	4	41	4	41	n	0.14	8	50	8	50	n	0.13	4	26	4	26	n	0.11	8	66	8	66	n	0.20	10	41	10	41	y	0.11	5	40	5	40	n	0.00	0	63	0	63	n	0.03	1	29	1	29	n	0.06	4	66	4	66	n	ENSMUSG00000037703.15	Lzts3	chr2	protein_coding	leucine zipper, putative tumor suppressor family member 3
novel_NIR_10563	chr2	130479669	130479805	-	130479339	130479805	A3SS	ENSMUST00000089561.10	novel	0.15	5	29	5	29	n	0.00	0	17	0	17	n	0.00	0	13	0	13	n	0.10	3	27	3	27	n	0.00	0	35	0	35	n	0.12	2	15	2	15	n	0.11	4	34	4	34	n	0.17	3	15	3	15	y	0.00	0	21	0	21	n	0.05	2	35	2	35	n	0.00	0	21	0	21	n	0.06	3	47	3	47	n	ENSMUSG00000037703.15	Lzts3	chr2	protein_coding	leucine zipper, putative tumor suppressor family member 3
novel_NIR_10564	chr2	130479967	130484645	-	130479967	130484641	A5SS	ENSMUST00000045761.7	novel	0.03	1	28	1	28	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.04	1	24	1	24	n	0.00	0	7	0	7	n	0.00	0	25	0	25	n	0.14	1	6	1	6	n	0.18	3	14	3	14	y	0.00	0	20	0	20	n	0.00	0	14	0	14	n	0.00	0	30	0	30	n	ENSMUSG00000037703.15	Lzts3	chr2	protein_coding	leucine zipper, putative tumor suppressor family member 3
novel_NIR_10565	chr2	130497162	130497751	-	130497162	130498994	A5SS	ENSMUST00000135167.8	novel	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	ENSMUSG00000068290.12	Ddrgk1	chr2	protein_coding	DDRGK domain containing 1
novel_NIR_10566	chr2	130497162	130498847	-	130497162	130498994	A5SS	ENSMUST00000135167.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000068290.12	Ddrgk1	chr2	protein_coding	DDRGK domain containing 1
novel_NIR_10567	chr2	130503754	130505268	-	130503758	130505268	A3SS	ENSMUST00000135072.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000068290.12	Ddrgk1	chr2	protein_coding	DDRGK domain containing 1
novel_NIR_10568	chr2	130503758	130503986	-	130503758	130505268	A5SS	ENSMUST00000135072.2	novel	0.00	0	2	0	2	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	7	0	7	0	y	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	ENSMUSG00000068290.12	Ddrgk1	chr2	protein_coding	DDRGK domain containing 1
novel_NIR_10569	chr2	130619201	130619323	-	130619201	130619396	A5SS	ENSMUST00000144717.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027309.19	4930402H24Rik	chr2	protein_coding	RIKEN cDNA 4930402H24 gene
novel_NIR_10570	chr2	130620421	130626344	-	130620424	130626344	A3SS	ENSMUST00000044766.15	novel	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.10	2	18	2	18	n	0.06	1	15	1	15	n	0.11	2	16	2	16	n	0.08	1	12	1	12	n	0.10	2	19	2	19	n	0.00	0	12	0	12	n	0.25	2	6	2	6	y	0.00	0	15	0	15	n	0.00	0	2	0	2	n	0.00	0	15	0	15	n	ENSMUSG00000027309.19	4930402H24Rik	chr2	protein_coding	RIKEN cDNA 4930402H24 gene
novel_NIR_10571	chr2	130654861	130655754	-	130654861	130662389	A5SS	ENSMUST00000146975.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027309.19	4930402H24Rik	chr2	protein_coding	RIKEN cDNA 4930402H24 gene
novel_NIR_10572	chr2	130717676	130720881	-	130717676	130748131	A5SS	ENSMUST00000135110.2	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	0.67	2	1	2	1	y	1.00	4	0	4	0	y	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	6	0	6	0	y	1.00	2	0	2	0	y	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000085566.2	A730017L22Rik	chr2	lncRNA	RIKEN cDNA A730017L22 gene
novel_NIR_10573	chr2	130717729	130725231	-	130724250	130725231	3pMXE	ENSMUST00000128176.2	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.10	1	9	1	9	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	ENSMUSG00000085566.2	A730017L22Rik	chr2	lncRNA	RIKEN cDNA A730017L22 gene
novel_NIR_10574	chr2	130725348	130725683	-	130725348	130725749	A5SS	ENSMUST00000128176.2	novel	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.36	4	7	4	7	y	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000085566.2	A730017L22Rik	chr2	lncRNA	RIKEN cDNA A730017L22 gene
novel_NIR_10575	chr2	13082418	13137764	-	13082418	13275722	A5SS	ENSMUST00000191959.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026727.11	Rsu1	chr2	protein_coding	Ras suppressor protein 1
novel_NIR_10576	chr2	130898712	130900001	-	130898712	130900582	A5SS	ENSMUST00000110232.9	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000027318.18	Adam33	chr2	protein_coding	a disintegrin and metallopeptidase domain 33
novel_NIR_10577	chr2	130991466	130993538	-	130991462	130993538	A3SS	ENSMUST00000184535.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027327.17	1700037H04Rik	chr2	protein_coding	RIKEN cDNA 1700037H04 gene
novel_NIR_10578	chr2	130995630	131005868	-	130995630	131001873	5pMXE	ENSMUST00000184535.8	novel	0.43	6	8	6	8	y	0.22	2	7	2	7	y	0.00	0	9	0	9	n	0.45	5	6	5	6	y	0.25	3	9	3	9	y	0.11	1	8	1	8	n	0.62	8	5	8	5	y	0.62	5	3	5	3	y	0.08	1	11	1	11	n	0.14	2	12	2	12	n	0.14	2	12	2	12	n	0.43	3	4	3	4	y	ENSMUSG00000027327.17	1700037H04Rik	chr2	protein_coding	RIKEN cDNA 1700037H04 gene
novel_NIR_10579	chr2	131053393	131054552	+	131053393	131054371	A3SS	ENSMUST00000110206.2	novel	0.00	0	2	0	2	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.20	1	4	1	4	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000068264.12	Ap5s1	chr2	protein_coding	adaptor-related protein 5 complex, sigma 1 subunit
novel_NIR_10580	chr2	131054656	131054998	+	131054656	131054746	A3SS	ENSMUST00000089506.12	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	0.00	0	6	0	6	n	0.00	0	8	0	8	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.00	0	8	0	8	n	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000068264.12	Ap5s1	chr2	protein_coding	adaptor-related protein 5 complex, sigma 1 subunit
novel_NIR_10581	chr2	131054656	131054998	+	131054656	131055090	A3SS	ENSMUST00000110210.8	novel	0.22	2	7	2	7	y	0.00	0	6	0	6	n	0.29	5	12	5	12	y	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.14	1	6	1	6	n	0.17	2	10	2	10	y	0.00	0	6	0	6	n	0.25	2	6	2	6	y	0.56	5	4	5	4	y	0.17	2	10	2	10	y	0.09	1	10	1	10	n	ENSMUSG00000068264.12	Ap5s1	chr2	protein_coding	adaptor-related protein 5 complex, sigma 1 subunit
novel_NIR_10582	chr2	131076782	131080656	+	131076047	131080656	A5SS	ENSMUST00000130597.8	novel	0.05	1	19	1	19	n	0.00	0	14	0	14	n	0.12	3	21	3	21	n	0.00	0	23	0	23	n	0.15	7	40	7	40	y	0.00	0	15	0	15	n	0.07	2	28	2	28	n	0.00	0	36	0	36	n	0.09	2	20	2	20	n	0.15	5	29	5	29	y	0.00	0	32	0	32	n	0.08	3	36	3	36	n	ENSMUSG00000037523.14	Mavs	chr2	protein_coding	mitochondrial antiviral signaling protein
novel_NIR_10583	chr2	131127320	131129394	+	131116040	131129394	A5SS	ENSMUST00000184932.9	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	ENSMUSG00000037514.19	Pank2	chr2	protein_coding	pantothenate kinase 2
novel_NIR_10584	chr2	131127320	131129394	+	131116183	131129394	A5SS	ENSMUST00000183388.2	novel	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000037514.19	Pank2	chr2	protein_coding	pantothenate kinase 2
novel_NIR_10585	chr2	131352423	131353904	+	131333573	131353904	A5SS	ENSMUST00000129143.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027333.19	Smox	chr2	protein_coding	spermine oxidase
novel_NIR_10586	chr2	131352423	131353904	+	131334403	131353904	A5SS	ENSMUST00000131698.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027333.19	Smox	chr2	protein_coding	spermine oxidase
novel_NIR_10587	chr2	131352423	131353904	+	131350966	131353904	A5SS	ENSMUST00000149180.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027333.19	Smox	chr2	protein_coding	spermine oxidase
novel_NIR_10588	chr2	131913313	131913837	-	131913387	131913837	A3SS	ENSMUST00000028815.15	novel	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	16	0	16	n	0.00	0	19	0	19	n	0.00	0	22	0	22	n	0.00	0	8	0	8	n	0.00	0	18	0	18	n	0.00	0	7	0	7	n	0.20	2	8	2	8	y	0.00	0	26	0	26	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	ENSMUSG00000027340.16	Slc23a2	chr2	protein_coding	solute carrier family 23 (nucleobase transporters), member 2
novel_NIR_10589	chr2	131943646	131945179	-	131943646	131953262	A5SS	ENSMUST00000128899.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.67	2	1	2	1	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000027340.16	Slc23a2	chr2	protein_coding	solute carrier family 23 (nucleobase transporters), member 2
novel_NIR_10590	chr2	131943646	131945179	-	131943646	131986932	A5SS	ENSMUST00000028815.15	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.11	1	8	1	8	n	0.00	0	7	0	7	n	0.10	1	9	1	9	n	0.25	1	3	1	3	n	0.29	2	5	2	5	y	0.50	3	3	3	3	y	0.00	0	2	0	2	n	0.22	2	7	2	7	y	ENSMUSG00000027340.16	Slc23a2	chr2	protein_coding	solute carrier family 23 (nucleobase transporters), member 2
novel_NIR_10591	chr2	132082546	132087876	-	132087292	132087876	3pMXE	ENSMUST00000143782.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.83	5	1	5	1	y	1.00	6	0	6	0	y	0.67	2	1	2	1	y	0.75	3	1	3	1	y	1.00	2	0	2	0	y	0.50	1	1	1	1	n	1.00	4	0	4	0	y	0.80	4	1	4	1	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	ENSMUSG00000027341.11	Tmem230	chr2	protein_coding	transmembrane protein 230
novel_NIR_10592	chr2	132085973	132087876	-	132087292	132087876	3pMXE	ENSMUST00000143782.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	2	0	2	0	y	0.75	3	1	3	1	y	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000027341.11	Tmem230	chr2	protein_coding	transmembrane protein 230
novel_NIR_10593	chr2	132105417	132122464	+	132105417	132136304	A3SS	ENSMUST00000147456.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000058793.15	Cds2	chr2	protein_coding	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2
novel_NIR_10594	chr2	132121614	132135165	+	132127163	132135165	5pMXE	ENSMUST00000125060.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000058793.15	Cds2	chr2	protein_coding	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2
novel_NIR_10595	chr2	132121614	132135165	+	132127885	132135165	5pMXE	ENSMUST00000089461.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000058793.15	Cds2	chr2	protein_coding	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2
novel_NIR_10596	chr2	13223929	13229116	-	13223971	13229116	A3SS	ENSMUST00000137670.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026727.11	Rsu1	chr2	protein_coding	Ras suppressor protein 1
novel_NIR_10597	chr2	132532148	132532518	+	132532148	132533870	A3SS	ENSMUST00000148271.8	novel	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	ENSMUSG00000044991.11	Shld1	chr2	protein_coding	shieldin complex subunit 1
novel_NIR_10598	chr2	132696942	132704255	+	132691923	132704255	A5SS	ENSMUST00000110122.10	novel	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027357.17	Crls1	chr2	protein_coding	cardiolipin synthase 1
novel_NIR_10599	chr2	132701287	132703129	+	132691923	132703129	A5SS	ENSMUST00000124834.8	novel	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000027357.17	Crls1	chr2	protein_coding	cardiolipin synthase 1
novel_NIR_10600	chr2	13276523	13291097	+	13276523	13313584	A3SS	ENSMUST00000149137.3	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000086358.3	Gm13270	chr2	lncRNA	predicted gene 13270
novel_NIR_10601	chr2	134390135	134390353	-	134390200	134390353	A3SS	ENSMUST00000140794.2	novel	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	1.00	2	0	2	0	y	ENSMUSG00000027261.3	Hao1	chr2	protein_coding	hydroxyacid oxidase 1, liver
novel_NIR_10602	chr2	134390135	134396116	-	134390591	134396116	A3SS&ES	ENSMUST00000140794.2	novel	0.94	29	2	29	2	y	0.91	21	2	21	2	y	0.74	20	7	20	7	y	0.94	30	2	30	2	y	0.95	35	2	35	2	y	0.92	11	1	11	1	y	0.90	19	2	19	2	y	0.82	18	4	18	4	y	0.91	10	1	10	1	y	0.97	29	1	29	1	y	1.00	7	0	7	0	y	0.83	25	5	25	5	y	ENSMUSG00000027261.3	Hao1	chr2	protein_coding	hydroxyacid oxidase 1, liver
novel_NIR_10603	chr2	13526157	13526885	-	13526157	13526889	A5SS	ENSMUST00000124488.7	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.33	2	4	2	4	y	0.00	0	3	0	3	n	ENSMUSG00000026723.11	Trdmt1	chr2	protein_coding	tRNA aspartic acid methyltransferase 1
novel_NIR_10604	chr2	13528308	13528409	-	13528308	13529762	A5SS	ENSMUST00000144957.3	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026723.11	Trdmt1	chr2	protein_coding	tRNA aspartic acid methyltransferase 1
novel_NIR_10605	chr2	13528308	13528409	-	13528308	13530429	A5SS	ENSMUST00000124488.7	novel	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000026723.11	Trdmt1	chr2	protein_coding	tRNA aspartic acid methyltransferase 1
novel_NIR_10606	chr2	135752164	135762597	+	135752164	135771875	A3SS	ENSMUST00000134310.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000039943.17	Plcb4	chr2	protein_coding	phospholipase C, beta 4
novel_NIR_10607	chr2	135829822	135840597	+	135829822;135836329	135836214;135840597	ES	ENSMUST00000184371.8	novel	0.00	0	4.0	0	6;2	n	0.86	3	0.5	3	0;1	y	0.00	0	4.5	0	3;6	n	0.00	0	1.5	0	1;2	n	0.00	0	6.0	0	6;6	n	0.00	0	1.5	0	1;2	n	0.00	0	6.0	0	7;5	n	0.00	0	3.5	0	3;4	n	0.00	0	1.0	0	0;2	n	0.00	0	2.0	0	2;2	n	0.00	0	2.5	0	3;2	n	0.00	0	1.5	0	2;1	n	ENSMUSG00000039943.17	Plcb4	chr2	protein_coding	phospholipase C, beta 4
novel_NIR_10608	chr2	136727620	136732983	-	136727620	136730279	A5SS&ES	ENSMUST00000144275.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027274.17	Mkks	chr2	protein_coding	McKusick-Kaufman syndrome
novel_NIR_10609	chr2	136727620	136732983	-	136727620	136733199	A5SS	ENSMUST00000028730.13	novel	0.00	0	13	0	13	n	0.00	0	25	0	25	n	0.00	0	20	0	20	n	0.00	0	13	0	13	n	0.15	2	11	2	11	y	0.00	0	17	0	17	n	0.00	0	19	0	19	n	0.00	0	8	0	8	n	0.00	0	20	0	20	n	0.00	0	19	0	19	n	0.00	0	13	0	13	n	0.00	0	13	0	13	n	ENSMUSG00000027274.17	Mkks	chr2	protein_coding	McKusick-Kaufman syndrome
novel_NIR_10610	chr2	136734281	136742876	+	136734281	136747463	A3SS	ENSMUST00000135260.8	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000027281.17	Slx4ip	chr2	protein_coding	SLX4 interacting protein
novel_NIR_10611	chr2	139752563	139789090	-	139752563	139789077	A5SS	ENSMUST00000046656.9	novel	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.33	2	4	2	4	y	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.50	1	1	1	1	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	ENSMUSG00000039033.12	Tasp1	chr2	protein_coding	taspase, threonine aspartase 1
novel_NIR_10612	chr2	139819633	139837993	-	139819633;139827128	139827049;139837993	ES	ENSMUST00000046656.9	novel	0.31	5	11.0	5	13;9	y	0.16	3	15.5	3	19;12	y	0.12	6	42.0	6	55;29	n	0.16	3	16.0	3	22;10	y	0.27	9	24.0	9	28;20	y	0.16	4	21.0	4	22;20	y	0.12	3	21.5	3	25;18	n	0.17	4	20.0	4	18;22	y	0.33	8	16.0	8	19;13	y	0.27	8	21.5	8	26;17	y	0.30	9	21.5	9	33;10	y	0.05	1	20.0	1	21;19	n	ENSMUSG00000039033.12	Tasp1	chr2	protein_coding	taspase, threonine aspartase 1
novel_NIR_10613	chr2	140023541	140025861	+	140023541	140025818	A3SS	ENSMUST00000044825.5	novel	0.00	0	11	0	11	n	0.00	0	25	0	25	n	0.00	0	16	0	16	n	0.00	0	12	0	12	n	0.00	0	19	0	19	n	0.50	2	2	2	2	y	0.00	0	18	0	18	n	0.00	0	6	0	6	n	0.00	0	17	0	17	n	0.00	0	18	0	18	n	0.00	0	27	0	27	n	0.00	0	16	0	16	n	ENSMUSG00000027384.7	Ndufaf5	chr2	protein_coding	NADH:ubiquinone oxidoreductase complex assembly factor 5
novel_NIR_10614	chr2	140035563	140036880	+	140035563	140044786	A3SS	ENSMUST00000044825.5	novel	0.00	0	17	0	17	n	0.00	0	21	0	21	n	0.00	0	18	0	18	n	0.00	0	19	0	19	n	0.17	2	10	2	10	y	0.00	0	14	0	14	n	0.00	0	22	0	22	n	0.00	0	5	0	5	n	0.00	0	16	0	16	n	0.00	0	31	0	31	n	0.00	0	35	0	35	n	0.00	0	23	0	23	n	ENSMUSG00000027384.7	Ndufaf5	chr2	protein_coding	NADH:ubiquinone oxidoreductase complex assembly factor 5
novel_NIR_10615	chr2	140242898	140258922	+	140242898	140294499	A3SS	ENSMUST00000110067.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000068205.15	Macrod2	chr2	protein_coding	mono-ADP ribosylhydrolase 2
novel_NIR_10616	chr2	142514298	142544543	-	142514298;142532621	142532499;142544543	ES	ENSMUST00000230763.2	novel	0.00	0	5.5	0	5;6	n	0.00	0	3.0	0	4;2	n	0.00	0	6.5	0	7;6	n	0.00	0	11.5	0	15;8	n	0.00	0	12.0	0	12;12	n	0.00	0	3.5	0	5;2	n	0.00	0	14.0	0	17;11	n	0.00	0	6.0	0	7;5	n	0.33	2	4.0	2	4;4	y	0.00	0	11.0	0	14;8	n	0.00	0	5.5	0	3;8	n	0.00	0	14.0	0	18;10	n	ENSMUSG00000038844.11	Kif16b	chr2	protein_coding	kinesin family member 16B
novel_NIR_10617	chr2	142514298	142544543	-	142541815	142544543	3pMXE	ENSMUST00000211861.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038844.11	Kif16b	chr2	protein_coding	kinesin family member 16B
novel_NIR_10618	chr2	142514298	142544543	-	142543246	142544543	3pMXE	ENSMUST00000212106.2	novel	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.17	2	10	2	10	y	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	ENSMUSG00000038844.11	Kif16b	chr2	protein_coding	kinesin family member 16B
novel_NIR_10619	chr2	14281213	14284709	+	14281213	14284647	A3SS	ENSMUST00000028045.4	novel	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.08	2	22	2	22	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.13	2	13	2	13	n	0.20	2	8	2	8	y	0.00	0	10	0	10	n	ENSMUSG00000026712.4	Mrc1	chr2	protein_coding	mannose receptor, C type 1
novel_NIR_10620	chr2	144094448	144095582	-	144095092	144095582	A3SS&ES	ENSMUST00000138745.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	1	0	1	n	ENSMUSG00000027423.16	Snx5	chr2	protein_coding	sorting nexin 5
novel_NIR_10621	chr2	144095050	144095582	-	144095092	144095582	A3SS	ENSMUST00000138745.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000027423.16	Snx5	chr2	protein_coding	sorting nexin 5
novel_NIR_10622	chr2	144101098	144112297	-	144111512	144112297	3pMXE	ENSMUST00000155509.2	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.22	2	7	2	7	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027423.16	Snx5	chr2	protein_coding	sorting nexin 5
novel_NIR_10623	chr2	144112867	144113835	+	144112934	144113835	A5SS	ENSMUST00000110028.8	novel	-	-	-	-	-	-	0.30	3	7	3	7	y	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.81	13	3	13	3	y	1.00	1	0	1	0	n	0.77	10	3	10	3	y	0.75	6	2	6	2	y	0.60	3	2	3	2	y	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.87	13	2	13	2	y	ENSMUSG00000027424.12	Mgme1	chr2	protein_coding	mitochondrial genome maintenance exonuclease 1
novel_NIR_10624	chr2	144112867	144113835	+	144112992	144113835	A5SS	ENSMUST00000028910.9	novel	0.00	0	3	0	3	n	0.60	3	2	3	2	y	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.62	13	8	13	8	y	0.50	1	1	1	1	n	0.71	10	4	10	4	y	0.67	6	3	6	3	y	0.50	3	3	3	3	y	0.20	1	4	1	4	n	0.00	0	6	0	6	n	0.76	13	4	13	4	y	ENSMUSG00000027424.12	Mgme1	chr2	protein_coding	mitochondrial genome maintenance exonuclease 1
novel_NIR_10625	chr2	144112867	144113835	+	144113263	144113835	A5SS	ENSMUST00000110027.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	13	0	13	0	y	1.00	1	0	1	0	n	0.91	10	1	10	1	y	1.00	6	0	6	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	13	0	13	0	y	ENSMUSG00000027424.12	Mgme1	chr2	protein_coding	mitochondrial genome maintenance exonuclease 1
novel_NIR_10626	chr2	144318067	144321525	-	144318067;144321062	144320935;144321525	ES	ENSMUST00000163701.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	0.5	0	0;1	n	0.00	0	0.5	0	1;0	n	0.67	2	1.0	2	1;1	y	0.00	0	1.0	0	1;1	n	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	0.00	0	1.5	0	0;3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037259.16	Dzank1	chr2	protein_coding	double zinc ribbon and ankyrin repeat domains 1
novel_NIR_10627	chr2	144398262	144401138	+	144398262	144399728	A3SS&ES	ENSMUST00000155258.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000027429.17	Sec23b	chr2	protein_coding	SEC23 homolog B, COPII coat complex component
novel_NIR_10628	chr2	144398262	144401138	+	144398262	144401127	A3SS	ENSMUST00000028916.15	novel	0.00	0	21	0	21	n	0.00	0	6	0	6	n	0.03	1	28	1	28	n	0.29	7	17	7	17	y	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	16	0	16	n	0.09	1	10	1	10	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.15	2	11	2	11	y	ENSMUSG00000027429.17	Sec23b	chr2	protein_coding	SEC23 homolog B, COPII coat complex component
novel_NIR_10629	chr2	144398333	144401138	+	144398333	144401127	A3SS	ENSMUST00000155876.8	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000027429.17	Sec23b	chr2	protein_coding	SEC23 homolog B, COPII coat complex component
novel_NIR_10630	chr2	145517504	145543117	+	145517504	145519004	A3SS&ES	ENSMUST00000231581.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.40	2	3	2	3	y	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000001768.17	Rin2	chr2	protein_coding	Ras and Rab interactor 2
novel_NIR_10631	chr2	145517504	145543117	+	145517504	145554375	A3SS	ENSMUST00000144661.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.33	2	4	2	4	y	0.14	1	6	1	6	n	0.10	1	9	1	9	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	9	0	9	n	ENSMUSG00000001768.17	Rin2	chr2	protein_coding	Ras and Rab interactor 2
novel_NIR_10632	chr2	145517810	145554375	+	145517504	145554375	A5SS	ENSMUST00000144661.2	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.29	2	5	2	5	y	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	9	0	9	n	ENSMUSG00000001768.17	Rin2	chr2	protein_coding	Ras and Rab interactor 2
novel_NIR_10633	chr2	145517810	145554375	+	145519099	145554375	A5SS&ES	ENSMUST00000231581.2	novel	0.25	1	3	1	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000001768.17	Rin2	chr2	protein_coding	Ras and Rab interactor 2
novel_NIR_10634	chr2	145517810	145554375	+	145543242	145554375	5pMXE	ENSMUST00000137180.3	novel	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000001768.17	Rin2	chr2	protein_coding	Ras and Rab interactor 2
novel_NIR_10635	chr2	145519095	145554375	+	145517504	145554375	A5SS	ENSMUST00000144661.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.43	3	4	3	4	y	0.00	0	6	0	6	n	0.10	1	9	1	9	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	9	0	9	n	ENSMUSG00000001768.17	Rin2	chr2	protein_coding	Ras and Rab interactor 2
novel_NIR_10636	chr2	145519095	145554375	+	145519099	145554375	A5SS	ENSMUST00000231581.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000001768.17	Rin2	chr2	protein_coding	Ras and Rab interactor 2
novel_NIR_10637	chr2	145519095	145554375	+	145543242	145554375	5pMXE	ENSMUST00000137180.3	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.60	3	2	3	2	y	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000001768.17	Rin2	chr2	protein_coding	Ras and Rab interactor 2
novel_NIR_10638	chr2	145554498	145554994	+	145554498	145579303	A3SS	ENSMUST00000231581.2	novel	0.80	4	1	4	1	y	0.50	2	2	2	2	y	1.00	3	0	3	0	y	0.40	2	3	2	3	y	0.58	7	5	7	5	y	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.60	3	2	3	2	y	0.36	4	7	4	7	y	0.43	3	4	3	4	y	0.14	1	6	1	6	n	ENSMUSG00000001768.17	Rin2	chr2	protein_coding	Ras and Rab interactor 2
novel_NIR_10639	chr2	145554498	145613647	+	145554498	145579303	A3SS&ES	ENSMUST00000231581.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.33	1	2	1	2	n	0.00	0	7	0	7	n	0.33	2	4	2	4	y	0.00	0	6	0	6	n	ENSMUSG00000001768.17	Rin2	chr2	protein_coding	Ras and Rab interactor 2
novel_NIR_10640	chr2	145554498	145628242	+	145554498;145579374	145579303;145628242	ES	ENSMUST00000231581.2	novel	0.00	0	1.0	0	1;1	n	0.00	0	1.0	0	2;0	n	-	-	-	-	-	-	0.67	3	1.5	3	3;0	y	0.36	2	3.5	2	5;2	y	0.57	2	1.5	2	3;0	y	0.57	2	1.5	2	3;0	y	0.33	1	2.0	1	3;1	n	0.00	0	1.0	0	2;0	n	0.00	0	3.5	0	7;0	n	0.00	0	2.5	0	4;1	n	0.50	4	4.0	4	6;2	y	ENSMUSG00000001768.17	Rin2	chr2	protein_coding	Ras and Rab interactor 2
novel_NIR_10641	chr2	145554498	145628242	+	145626856	145628242	5pMXE	ENSMUST00000142847.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.50	2	2	2	2	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	4	0	4	0	y	ENSMUSG00000001768.17	Rin2	chr2	protein_coding	Ras and Rab interactor 2
novel_NIR_10642	chr2	145554498	145628242	+	145628099	145628242	5pMXE	ENSMUST00000110005.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	0.67	2	1	2	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000001768.17	Rin2	chr2	protein_coding	Ras and Rab interactor 2
novel_NIR_10643	chr2	145554498;145615863	145615725;145628242	+	145554498;145579374	145579303;145628242	MXE	ENSMUST00000231581.2	novel	0.00	0.0	1.0	0;0	1;1	n	0.00	0.0	1.0	0;0	2;0	n	1.00	1.0	0.0	1;1	0;0	n	0.75	4.5	1.5	4;5	3;0	y	0.46	3.0	3.5	2;4	5;2	y	0.40	1.0	1.5	1;1	3;0	n	0.62	2.5	1.5	1;4	3;0	n	0.50	2.0	2.0	0;4	3;1	n	0.75	3.0	1.0	0;6	2;0	n	0.36	2.0	3.5	3;1	7;0	n	0.44	2.0	2.5	1;3	4;1	n	0.11	0.5	4.0	0;1	6;2	n	ENSMUSG00000001768.17	Rin2	chr2	protein_coding	Ras and Rab interactor 2
novel_NIR_10644	chr2	145579374	145582362	+	145579374	145593833	A3SS	ENSMUST00000137180.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000001768.17	Rin2	chr2	protein_coding	Ras and Rab interactor 2
novel_NIR_10645	chr2	145579374	145582362	+	145579374	145628242	A3SS	ENSMUST00000231581.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000001768.17	Rin2	chr2	protein_coding	Ras and Rab interactor 2
novel_NIR_10646	chr2	145579374	145613647	+	145579374	145593833	3pMXE	ENSMUST00000137180.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000001768.17	Rin2	chr2	protein_coding	Ras and Rab interactor 2
novel_NIR_10647	chr2	145579374	145613647	+	145579374	145628242	A3SS	ENSMUST00000231581.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	2	2	2	2	y	ENSMUSG00000001768.17	Rin2	chr2	protein_coding	Ras and Rab interactor 2
novel_NIR_10648	chr2	145579374	145615725	+	145579374	145593833	3pMXE	ENSMUST00000137180.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000001768.17	Rin2	chr2	protein_coding	Ras and Rab interactor 2
novel_NIR_10649	chr2	145579374;145615863	145615725;145628242	+	145579374	145628242	cassetteExon	ENSMUST00000231581.2	novel	0.00	0.0	1	0;0	1	n	-	-	-	-	-	-	1.00	0.5	0	0;1	0	n	1.00	4.0	0	3;5	0	y	0.50	2.0	2	0;4	2	n	1.00	1.5	0	2;1	0	n	1.00	3.0	0	2;4	0	y	0.67	2.0	1	0;4	1	n	1.00	5.0	0	4;6	0	y	1.00	1.0	0	1;1	0	n	0.60	1.5	1	0;3	1	n	0.33	1.0	2	1;1	2	n	ENSMUSG00000001768.17	Rin2	chr2	protein_coding	Ras and Rab interactor 2
novel_NIR_10650	chr2	145615863	145628242	+	145579374	145628242	A5SS	ENSMUST00000231581.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	5	0	5	0	n	0.67	4	2	4	2	n	1.00	1	0	1	0	n	1.00	4	0	4	0	n	0.80	4	1	4	1	y	1.00	6	0	6	0	n	1.00	1	0	1	0	n	0.75	3	1	3	1	n	0.33	1	2	1	2	n	ENSMUSG00000001768.17	Rin2	chr2	protein_coding	Ras and Rab interactor 2
novel_NIR_10651	chr2	145615863	145628242	+	145626856	145628242	5pMXE	ENSMUST00000142847.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	5	0	5	0	y	0.67	4	2	4	2	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	0.67	4	2	4	2	y	1.00	6	0	6	0	y	0.50	1	1	1	1	n	0.75	3	1	3	1	y	1.00	1	0	1	0	n	ENSMUSG00000001768.17	Rin2	chr2	protein_coding	Ras and Rab interactor 2
novel_NIR_10652	chr2	145615863	145628242	+	145628099	145628242	5pMXE	ENSMUST00000110005.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	0.80	4	1	4	1	y	1.00	4	0	4	0	y	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	ENSMUSG00000001768.17	Rin2	chr2	protein_coding	Ras and Rab interactor 2
novel_NIR_10653	chr2	145681093	145686631	+	145664285	145686631	A5SS	ENSMUST00000110005.8	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.20	2	8	2	8	y	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.11	1	8	1	8	n	0.00	0	4	0	4	n	0.00	0	16	0	16	n	0.20	1	4	1	4	n	0.00	0	6	0	6	n	ENSMUSG00000001768.17	Rin2	chr2	protein_coding	Ras and Rab interactor 2
novel_NIR_10654	chr2	145681093	145686631	+	145664681	145686631	A5SS	ENSMUST00000147976.8	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.40	2	3	2	3	y	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.00	0	8	0	8	n	ENSMUSG00000001768.17	Rin2	chr2	protein_coding	Ras and Rab interactor 2
novel_NIR_10655	chr2	145745282	145750392	+	145745282	145753617	A3SS	ENSMUST00000165635.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000002728.15	Naa20	chr2	protein_coding	N(alpha)-acetyltransferase 20, NatB catalytic subunit
novel_NIR_10656	chr2	145753687	145754313	+	145753713	145754313	A5SS	ENSMUST00000002805.14	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	ENSMUSG00000002728.15	Naa20	chr2	protein_coding	N(alpha)-acetyltransferase 20, NatB catalytic subunit
novel_NIR_10657	chr2	145781911	145785602	+	145781911	145788966	A3SS	ENSMUST00000116398.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.60	3	2	3	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037143.18	Cfap61	chr2	protein_coding	cilia and flagella associated protein 61
novel_NIR_10658	chr2	146230600	146246783	-	146230604	146246783	A3SS	ENSMUST00000109986.9	novel	0.00	0	6	0	6	n	0.15	2	11	2	11	y	0.00	0	47	0	47	n	0.00	0	27	0	27	n	0.00	0	29	0	29	n	0.00	0	26	0	26	n	0.00	0	23	0	23	n	0.00	0	25	0	25	n	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	ENSMUSG00000037110.21	Ralgapa2	chr2	protein_coding	Ral GTPase activating protein, alpha subunit 2 (catalytic)
novel_NIR_10659	chr2	146277926	146283057	-	146277926	146285704	A5SS	ENSMUST00000109986.9	novel	0.44	4	5	4	5	y	0.00	0	7	0	7	n	0.00	0	36	0	36	n	0.00	0	14	0	14	n	0.05	1	20	1	20	n	0.00	0	15	0	15	n	0.06	1	16	1	16	n	0.00	0	24	0	24	n	0.00	0	15	0	15	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	22	0	22	n	ENSMUSG00000037110.21	Ralgapa2	chr2	protein_coding	Ral GTPase activating protein, alpha subunit 2 (catalytic)
novel_NIR_10660	chr2	146321349	146326872	-	146321349	146327041	A5SS	ENSMUST00000109986.9	novel	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.07	2	25	2	25	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.17	4	20	4	20	y	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	ENSMUSG00000037110.21	Ralgapa2	chr2	protein_coding	Ral GTPase activating protein, alpha subunit 2 (catalytic)
novel_NIR_10661	chr2	146705789	146725899	+	146705789	146730941	A3SS	ENSMUST00000156232.2	novel	0.00	0	6	0	6	n	0.50	2	2	2	2	y	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	ENSMUSG00000074749.11	Kiz	chr2	protein_coding	kizuna centrosomal protein
novel_NIR_10662	chr2	146712766	146725899	+	146712766	146730941	A3SS	ENSMUST00000099278.9	novel	0.04	1	26	1	26	n	0.00	0	16	0	16	n	0.10	3	27	3	27	n	0.09	4	41	4	41	n	0.00	0	28	0	28	n	0.13	2	13	2	13	n	0.03	1	28	1	28	n	0.15	4	22	4	22	y	0.00	0	21	0	21	n	0.07	3	37	3	37	n	0.04	1	23	1	23	n	0.02	1	49	1	49	n	ENSMUSG00000074749.11	Kiz	chr2	protein_coding	kizuna centrosomal protein
novel_NIR_10663	chr2	147789128	147804554	-	147789128;147803984	147803952;147804554	ES	ENSMUST00000129082.2	novel	0.19	12	52.5	12	49;56	y	0.08	3	34.5	3	32;37	n	0.00	0	16.5	0	14;19	n	0.04	3	66.5	3	70;63	n	0.01	1	72.5	1	64;81	n	0.00	0	10.0	0	12;8	n	0.09	4	42.0	4	45;39	n	0.00	0	29.0	0	32;26	n	0.05	4	72.0	4	70;74	n	0.12	8	60.5	8	55;66	n	0.03	2	60.5	2	55;66	n	0.06	6	88.5	6	90;87	n	ENSMUSG00000086141.8	9030622O22Rik	chr2	lncRNA	RIKEN cDNA 9030622O22 gene
novel_NIR_10664	chr2	147804627	147814595	-	147804627;147809191	147809162;147814595	ES	ENSMUST00000129082.2	novel	0.21	11	42.5	11	46;39	y	0.15	4	22.5	4	25;20	y	0.12	2	14.0	2	17;11	n	0.29	15	37.5	15	39;36	y	0.25	18	54.5	18	64;45	y	0.00	0	11.0	0	11;11	n	0.19	11	46.0	11	50;42	y	0.04	1	26.5	1	29;24	n	0.23	16	54.0	16	53;55	y	0.15	9	53.0	9	56;50	y	0.33	22	45.0	22	44;46	y	0.11	10	78.0	10	84;72	n	ENSMUSG00000086141.8	9030622O22Rik	chr2	lncRNA	RIKEN cDNA 9030622O22 gene
novel_NIR_10665	chr2	147814934	147818157	-	147814934	147817715	5pMXE	ENSMUST00000129082.2	novel	0.71	10	4	10	4	y	0.78	14	4	14	4	y	0.45	5	6	5	6	y	0.90	28	3	28	3	y	0.90	19	2	19	2	y	1.00	3	0	3	0	y	0.71	10	4	10	4	y	0.73	8	3	8	3	y	0.93	27	2	27	2	y	0.74	20	7	20	7	y	0.90	18	2	18	2	y	0.81	30	7	30	7	y	ENSMUSG00000086141.8	9030622O22Rik	chr2	lncRNA	RIKEN cDNA 9030622O22 gene
novel_NIR_10666	chr2	147814934	147818157	-	147814934	147830719	A5SS	ENSMUST00000136555.8	novel	0.83	10	2	10	2	n	0.82	14	3	14	3	n	1.00	5	0	5	0	n	0.93	28	2	28	2	n	1.00	19	0	19	0	n	0.75	3	1	3	1	y	0.83	10	2	10	2	n	1.00	8	0	8	0	n	0.96	27	1	27	1	n	0.71	20	8	20	8	n	0.90	18	2	18	2	n	0.81	30	7	30	7	n	ENSMUSG00000086141.8	9030622O22Rik	chr2	lncRNA	RIKEN cDNA 9030622O22 gene
novel_NIR_10667	chr2	147814934	147853171	-	147814934	147817715	5pMXE	ENSMUST00000129082.2	novel	0.50	4	4	4	4	y	0.33	2	4	2	4	y	0.00	0	6	0	6	n	0.70	7	3	7	3	y	0.80	8	2	8	2	y	1.00	1	0	1	0	n	0.43	3	4	3	4	y	0.25	1	3	1	3	n	0.71	5	2	5	2	y	0.61	11	7	11	7	y	0.67	4	2	4	2	y	0.50	7	7	7	7	y	ENSMUSG00000086141.8	9030622O22Rik	chr2	lncRNA	RIKEN cDNA 9030622O22 gene
novel_NIR_10668	chr2	147814934	147853171	-	147814934;147830785	147830719;147853171	ES	ENSMUST00000132070.2	novel	0.32	4	8.5	4	2;15	y	0.29	2	5.0	2	3;7	y	0.00	0	2.0	0	0;4	n	0.52	7	6.5	7	2;11	y	0.57	8	6.0	8	0;12	y	0.40	1	1.5	1	1;2	n	0.32	3	6.5	3	2;11	y	0.18	1	4.5	1	0;9	n	0.56	5	4.0	5	1;7	y	0.48	11	12.0	11	8;16	y	0.40	4	6.0	4	2;10	y	0.35	7	13.0	7	7;19	y	ENSMUSG00000086141.8	9030622O22Rik	chr2	lncRNA	RIKEN cDNA 9030622O22 gene
novel_NIR_10669	chr2	147814934	147882061	-	147814934	147817715	5pMXE	ENSMUST00000129082.2	novel	0.50	4	4	4	4	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.67	4	2	4	2	y	1.00	2	0	2	0	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.46	6	7	6	7	y	0.71	5	2	5	2	y	0.12	1	7	1	7	n	ENSMUSG00000086141.8	9030622O22Rik	chr2	lncRNA	RIKEN cDNA 9030622O22 gene
novel_NIR_10670	chr2	147814934	147882061	-	147814934;147830785	147830719;147882061	ES	ENSMUST00000136555.8	novel	0.80	4	1.0	4	2;0	y	0.00	0	2.5	0	3;2	n	-	-	-	-	-	-	0.00	0	1.0	0	2;0	n	0.80	4	1.0	4	0;2	y	0.80	2	0.5	2	1;0	y	0.00	0	1.5	0	2;1	n	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	0.60	6	4.0	6	8;0	y	0.83	5	1.0	5	2;0	y	0.22	1	3.5	1	7;0	n	ENSMUSG00000086141.8	9030622O22Rik	chr2	lncRNA	RIKEN cDNA 9030622O22 gene
novel_NIR_10671	chr2	147814934;147818325	147818157;147830719	-	147814934	147830719	cassetteExon	ENSMUST00000136555.8	novel	0.79	7.5	2	10;5	2	y	0.75	9.0	3	14;4	3	y	1.00	3.0	0	5;1	0	n	0.88	14.0	2	28;0	2	n	1.00	14.5	0	19;10	0	y	0.60	1.5	1	3;0	1	n	0.75	6.0	2	10;2	2	y	1.00	5.5	0	8;3	0	y	0.95	19.5	1	27;12	1	y	0.68	17.0	8	20;14	8	y	0.83	9.5	2	18;1	2	n	0.75	20.5	7	30;11	7	y	ENSMUSG00000086141.8	9030622O22Rik	chr2	lncRNA	RIKEN cDNA 9030622O22 gene
novel_NIR_10672	chr2	147814934;147818325	147818157;147853171	-	147814934;147830785	147830719;147853171	MXE	ENSMUST00000132070.2	novel	0.62	14.0	8.5	10;18	2;15	y	0.71	12.5	5.0	14;11	3;7	y	0.75	6.0	2.0	5;7	0;4	y	0.81	28.5	6.5	28;29	2;11	y	0.82	26.5	6.0	19;34	0;12	y	0.73	4.0	1.5	3;5	1;2	y	0.61	10.0	6.5	10;10	2;11	y	0.64	8.0	4.5	8;8	0;9	y	0.85	22.0	4.0	27;17	1;7	y	0.60	18.0	12.0	20;16	8;16	y	0.72	15.5	6.0	18;13	2;10	y	0.67	26.5	13.0	30;23	7;19	y	ENSMUSG00000086141.8	9030622O22Rik	chr2	lncRNA	RIKEN cDNA 9030622O22 gene
novel_NIR_10673	chr2	147814934;147853275	147853171;147882061	-	147814934;147830785	147830719;147882061	MXE	ENSMUST00000136555.8	novel	0.93	13.0	1.0	4;22	2;0	y	0.76	8.0	2.5	2;14	3;2	y	1.00	7.0	0.0	0;14	0;0	n	0.95	18.5	1.0	7;30	2;0	y	0.96	26.5	1.0	8;45	0;2	y	0.86	3.0	0.5	1;5	1;0	n	0.93	19.0	1.5	3;35	2;1	y	1.00	13.5	0.0	1;26	0;0	n	0.98	20.0	0.5	5;35	1;0	y	0.83	19.5	4.0	11;28	8;0	y	0.93	13.0	1.0	4;22	2;0	y	0.83	17.5	3.5	7;28	7;0	y	ENSMUSG00000086141.8	9030622O22Rik	chr2	lncRNA	RIKEN cDNA 9030622O22 gene
novel_NIR_10674	chr2	147817123	147817715	-	147814934	147817715	A3SS	ENSMUST00000129082.2	novel	0.64	7	4	7	4	y	0.33	2	4	2	4	y	0.00	0	6	0	6	n	0.62	5	3	5	3	y	0.75	6	2	6	2	y	1.00	5	0	5	0	y	0.78	14	4	14	4	y	0.67	6	3	6	3	y	0.83	10	2	10	2	y	0.50	7	7	7	7	y	0.71	5	2	5	2	y	0.50	7	7	7	7	y	ENSMUSG00000086141.8	9030622O22Rik	chr2	lncRNA	RIKEN cDNA 9030622O22 gene
novel_NIR_10675	chr2	147822346	147830719	-	147814934	147830719	A3SS	ENSMUST00000136555.8	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	0.50	1	1	1	1	n	0.33	1	2	1	2	n	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.30	3	7	3	7	y	ENSMUSG00000086141.8	9030622O22Rik	chr2	lncRNA	RIKEN cDNA 9030622O22 gene
novel_NIR_10676	chr2	147822346	147853171	-	147830785	147853171	A3SS&ES	ENSMUST00000132070.2	novel	0.06	1	15	1	15	n	0.12	1	7	1	7	n	0.00	0	4	0	4	n	0.27	4	11	4	11	y	0.08	1	12	1	12	n	0.00	0	2	0	2	n	0.15	2	11	2	11	y	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	16	0	16	n	0.00	0	10	0	10	n	0.00	0	19	0	19	n	ENSMUSG00000086141.8	9030622O22Rik	chr2	lncRNA	RIKEN cDNA 9030622O22 gene
novel_NIR_10677	chr2	147825775	147830719	-	147814934	147830719	A3SS	ENSMUST00000136555.8	novel	0.50	2	2	2	2	y	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.80	4	1	4	1	y	0.11	1	8	1	8	n	0.00	0	2	0	2	n	0.22	2	7	2	7	n	ENSMUSG00000086141.8	9030622O22Rik	chr2	lncRNA	RIKEN cDNA 9030622O22 gene
novel_NIR_10678	chr2	147829486	147830719	-	147814934	147830719	A3SS	ENSMUST00000136555.8	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.33	1	2	1	2	n	0.46	6	7	6	7	y	ENSMUSG00000086141.8	9030622O22Rik	chr2	lncRNA	RIKEN cDNA 9030622O22 gene
novel_NIR_10679	chr2	147846100	147853171	-	147830785	147853171	A3SS	ENSMUST00000132070.2	novel	0.00	0	15	0	15	n	0.12	1	7	1	7	n	0.00	0	4	0	4	n	0.15	2	11	2	11	y	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	16	0	16	n	0.33	5	10	5	10	y	0.14	3	19	3	19	n	ENSMUSG00000086141.8	9030622O22Rik	chr2	lncRNA	RIKEN cDNA 9030622O22 gene
novel_NIR_10680	chr2	147850911	147853171	-	147830785	147853171	A3SS	ENSMUST00000132070.2	novel	0.00	0	15	0	15	n	0.12	1	7	1	7	n	0.00	0	4	0	4	n	0.21	3	11	3	11	y	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.10	1	9	1	9	n	0.00	0	7	0	7	n	0.00	0	16	0	16	n	0.00	0	10	0	10	n	0.00	0	19	0	19	n	ENSMUSG00000086141.8	9030622O22Rik	chr2	lncRNA	RIKEN cDNA 9030622O22 gene
novel_NIR_10681	chr2	147853275	147880055	-	147853275;147871656	147871591;147880055	ES	ENSMUST00000132070.2	novel	0.32	5	10.5	5	9;12	y	0.16	2	10.5	2	10;11	y	0.22	1	3.5	1	3;4	n	0.55	8	6.5	8	9;4	y	0.33	11	22.0	11	23;21	y	0.00	0	2.0	0	2;2	n	0.41	8	11.5	8	13;10	y	0.00	0	2.0	0	3;1	n	0.21	5	18.5	5	18;19	y	0.39	8	12.5	8	11;14	y	0.42	10	14.0	10	12;16	y	0.10	2	18.0	2	19;17	n	ENSMUSG00000086141.8	9030622O22Rik	chr2	lncRNA	RIKEN cDNA 9030622O22 gene
novel_NIR_10682	chr2	147853275	147882061	-	147830785	147882061	A3SS	ENSMUST00000136555.8	novel	1.00	22	0	22	0	n	0.88	14	2	14	2	n	1.00	14	0	14	0	y	1.00	30	0	30	0	n	0.96	45	2	45	2	n	1.00	5	0	5	0	n	0.97	35	1	35	1	n	1.00	26	0	26	0	n	1.00	35	0	35	0	n	1.00	28	0	28	0	n	1.00	22	0	22	0	n	1.00	28	0	28	0	n	ENSMUSG00000086141.8	9030622O22Rik	chr2	lncRNA	RIKEN cDNA 9030622O22 gene
novel_NIR_10683	chr2	147865717	147880055	-	147871656	147880055	A3SS&ES	ENSMUST00000132070.2	novel	0.20	3	12	3	12	y	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.12	3	21	3	21	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.00	0	19	0	19	n	0.07	1	14	1	14	n	0.00	0	16	0	16	n	0.00	0	17	0	17	n	ENSMUSG00000086141.8	9030622O22Rik	chr2	lncRNA	RIKEN cDNA 9030622O22 gene
novel_NIR_10684	chr2	147865717	147882061	-	147830785	147882061	A3SS	ENSMUST00000136555.8	novel	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000086141.8	9030622O22Rik	chr2	lncRNA	RIKEN cDNA 9030622O22 gene
novel_NIR_10685	chr2	147871656	147882061	-	147830785	147882061	A3SS	ENSMUST00000136555.8	novel	1.00	4	0	4	0	y	0.71	5	2	5	2	y	1.00	1	0	1	0	n	1.00	13	0	13	0	y	0.82	9	2	9	2	y	1.00	1	0	1	0	n	0.80	4	1	4	1	y	-	-	-	-	-	-	1.00	8	0	8	0	y	1.00	8	0	8	0	y	-	-	-	-	-	-	1.00	11	0	11	0	n	ENSMUSG00000086141.8	9030622O22Rik	chr2	lncRNA	RIKEN cDNA 9030622O22 gene
novel_NIR_10686	chr2	147871656	147882061	-	147871656	147880055	5pMXE	ENSMUST00000132070.2	novel	0.25	4	12	4	12	y	0.31	5	11	5	11	y	0.20	1	4	1	4	n	0.76	13	4	13	4	y	0.30	9	21	9	21	y	0.33	1	2	1	2	n	0.29	4	10	4	10	y	0.00	0	1	0	1	n	0.30	8	19	8	19	y	0.36	8	14	8	14	y	0.00	0	16	0	16	n	0.39	11	17	11	17	y	ENSMUSG00000086141.8	9030622O22Rik	chr2	lncRNA	RIKEN cDNA 9030622O22 gene
novel_NIR_10687	chr2	147880159	147882061	-	147830785	147882061	A3SS	ENSMUST00000136555.8	novel	1.00	10	0	10	0	y	0.78	7	2	7	2	y	1.00	5	0	5	0	y	1.00	26	0	26	0	y	0.91	20	2	20	2	y	1.00	6	0	6	0	y	0.95	20	1	20	1	y	1.00	2	0	2	0	y	1.00	14	0	14	0	y	1.00	15	0	15	0	y	1.00	25	0	25	0	y	1.00	15	0	15	0	y	ENSMUSG00000086141.8	9030622O22Rik	chr2	lncRNA	RIKEN cDNA 9030622O22 gene
novel_NIR_10688	chr2	148514755	148514901	+	148514755	148516384	A3SS	ENSMUST00000109961.8	novel	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.29	2	5	2	5	y	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.00	0	4	0	4	n	ENSMUSG00000036992.11	Nxt1	chr2	protein_coding	NTF2-related export protein 1
novel_NIR_10689	chr2	148523135	148525524	+	148523135	148525514	A3SS	ENSMUST00000028928.8	novel	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.05	1	21	1	21	n	0.00	0	4	0	4	n	0.19	3	13	3	13	y	0.00	0	20	0	20	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.05	1	20	1	20	n	ENSMUSG00000027439.10	Gzf1	chr2	protein_coding	GDNF-inducible zinc finger protein 1
novel_NIR_10690	chr2	148523375	148525524	+	148523375	148525514	A3SS	ENSMUST00000131292.2	novel	0.20	2	8	2	8	y	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.29	2	5	2	5	y	0.43	6	8	6	8	y	0.00	0	1	0	1	n	0.33	3	6	3	6	y	0.50	3	3	3	3	y	0.11	1	8	1	8	n	0.00	0	13	0	13	n	0.14	1	6	1	6	n	0.20	2	8	2	8	y	ENSMUSG00000027439.10	Gzf1	chr2	protein_coding	GDNF-inducible zinc finger protein 1
novel_NIR_10691	chr2	148542397	148543029	-	148542397	148544981	A5SS	ENSMUST00000136513.2	novel	0.00	0	5	0	5	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.86	6	1	6	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000027438.15	Napb	chr2	protein_coding	N-ethylmaleimide sensitive fusion protein attachment protein beta
novel_NIR_10692	chr2	149960120	149961435	-	149960120	149961401	A5SS	ENSMUST00000122859.8	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000068134.14	Zfp120	chr2	protein_coding	zinc finger protein 120
novel_NIR_10693	chr2	149960120	149961435	-	149960120	149961485	A5SS	ENSMUST00000089207.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.22	2	7	2	7	y	-	-	-	-	-	-	0.00	0	12	0	12	n	ENSMUSG00000068134.14	Zfp120	chr2	protein_coding	zinc finger protein 120
novel_NIR_10694	chr2	149960120	149961435	-	149960120	149961745	A5SS	ENSMUST00000109931.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000068134.14	Zfp120	chr2	protein_coding	zinc finger protein 120
novel_NIR_10695	chr2	15003099	15014221	-	15003103	15014221	A3SS	ENSMUST00000028034.15	novel	0.33	2	4	2	4	y	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.20	1	4	1	4	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	ENSMUSG00000026707.16	Nsun6	chr2	protein_coding	NOL1/NOP2/Sun domain family member 6
novel_NIR_10696	chr2	150060118	150069785	+	150060118	150078612	A3SS	ENSMUST00000073782.4	novel	0.00	0	1	0	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000060336.7	Zfp937	chr2	protein_coding	zinc finger protein 937
novel_NIR_10697	chr2	150170366	150252861	-	150251709	150252861	3pMXE	ENSMUST00000109916.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000068130.12	Zfp442	chr2	protein_coding	zinc finger protein 442
novel_NIR_10698	chr2	150591153	150594933	+	150591153	150594539	A3SS&ES	ENSMUST00000139723.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	5	0	5	0	y	ENSMUSG00000033068.17	Entpd6	chr2	protein_coding	ectonucleoside triphosphate diphosphohydrolase 6
novel_NIR_10699	chr2	150591153	150594933	+	150591153	150594930	A3SS	ENSMUST00000094467.6	novel	0.08	1	11	1	11	n	0.00	0	2	0	2	n	0.10	1	9	1	9	n	0.08	1	11	1	11	n	0.09	1	10	1	10	n	0.00	0	3	0	3	n	0.00	0	18	0	18	n	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.00	0	10	0	10	n	0.29	2	5	2	5	y	0.45	5	6	5	6	y	ENSMUSG00000033068.17	Entpd6	chr2	protein_coding	ectonucleoside triphosphate diphosphohydrolase 6
novel_NIR_10700	chr2	150612324	150612484	+	150612324	150612549	A3SS	ENSMUST00000094467.6	novel	0.00	0	13	0	13	n	0.08	2	23	2	23	n	0.00	0	19	0	19	n	0.00	0	17	0	17	n	0.00	0	16	0	16	n	0.22	2	7	2	7	y	0.16	3	16	3	16	y	0.00	0	11	0	11	n	0.20	3	12	3	12	y	0.05	1	20	1	20	n	0.00	0	19	0	19	n	0.07	1	13	1	13	n	ENSMUSG00000033068.17	Entpd6	chr2	protein_coding	ectonucleoside triphosphate diphosphohydrolase 6
novel_NIR_10701	chr2	150767918	150769226	+	150767918	150769198	A3SS	ENSMUST00000123217.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	1.00	1	0	1	0	n	ENSMUSG00000027454.11	Gins1	chr2	protein_coding	GINS complex subunit 1 (Psf1 homolog)
novel_NIR_10702	chr2	151383524	151384212	-	151383524	151384173	A5SS	ENSMUST00000148705.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.67	4	2	4	2	y	0.00	0	1	0	1	n	0.20	1	4	1	4	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000087433.2	Gm14167	chr2	lncRNA	predicted gene 14167
novel_NIR_10703	chr2	151401546	151402541	+	151401536	151402541	A5SS	ENSMUST00000143230.8	novel	0.00	0	8	0	8	n	0.67	2	1	2	1	y	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.21	3	11	3	11	y	0.00	0	2	0	2	n	0.50	6	6	6	6	y	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.12	1	7	1	7	n	0.00	0	7	0	7	n	0.14	1	6	1	6	n	ENSMUSG00000032966.15	Fkbp1a	chr2	protein_coding	FK506 binding protein 1a
novel_NIR_10704	chr2	151577542	151582931	-	151571596	151582931	A3SS	ENSMUST00000155939.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000032869.16	Psmf1	chr2	protein_coding	proteasome (prosome, macropain) inhibitor subunit 1
novel_NIR_10705	chr2	152069151	152092322	+	152068952	152092322	A5SS	ENSMUST00000133119.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	ENSMUSG00000074698.11	Csnk2a1	chr2	protein_coding	casein kinase 2, alpha 1 polypeptide
novel_NIR_10706	chr2	152161168	152164080	-	152161340	152164080	A3SS	ENSMUST00000144865.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000027466.16	Rbck1	chr2	protein_coding	RanBP-type and C3HC4-type zinc finger containing 1
novel_NIR_10707	chr2	152169260	152172320	-	152169260	152169626	5pMXE	ENSMUST00000131889.8	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000027466.16	Rbck1	chr2	protein_coding	RanBP-type and C3HC4-type zinc finger containing 1
novel_NIR_10708	chr2	152624202	152671536	-	152624202	152670367	5pMXE	ENSMUST00000173755.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000007659.19	Bcl2l1	chr2	protein_coding	BCL2-like 1
novel_NIR_10709	chr2	152672022	152673408	-	152672022	152672107	5pMXE	ENSMUST00000140436.2	novel	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.25	1	3	1	3	n	-	-	-	-	-	-	ENSMUSG00000007659.19	Bcl2l1	chr2	protein_coding	BCL2-like 1
novel_NIR_10710	chr2	152672022	152673408	-	152672022	152672461	5pMXE	ENSMUST00000134357.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000007659.19	Bcl2l1	chr2	protein_coding	BCL2-like 1
novel_NIR_10711	chr2	152672022	152673408	-	152672022	152673523	A5SS	ENSMUST00000007803.12	novel	0.67	2	1	2	1	y	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.17	1	5	1	5	n	0.00	0	6	0	6	n	0.00	0	20	0	20	n	0.06	1	16	1	16	n	0.00	0	10	0	10	n	ENSMUSG00000007659.19	Bcl2l1	chr2	protein_coding	BCL2-like 1
novel_NIR_10712	chr2	152854372	152855930	-	152855227	152855930	A3SS&ES	ENSMUST00000140853.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000027472.15	Pdrg1	chr2	protein_coding	p53 and DNA damage regulated 1
novel_NIR_10713	chr2	152855227	152855765	-	152855227	152855930	A5SS	ENSMUST00000140853.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	ENSMUSG00000027472.15	Pdrg1	chr2	protein_coding	p53 and DNA damage regulated 1
novel_NIR_10714	chr2	152856005	152856919	-	152856005	152857128	A5SS	ENSMUST00000150545.8	novel	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	3	0	3	0	y	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000027472.15	Pdrg1	chr2	protein_coding	p53 and DNA damage regulated 1
novel_NIR_10715	chr2	152914712	152916692	+	152914132	152916692	A5SS	ENSMUST00000127898.9	novel	1.00	2	0	2	0	n	1.00	1	0	1	0	n	0.00	0	6	0	6	n	1.00	1	0	1	0	n	0.80	4	1	4	1	y	-	-	-	-	-	-	0.57	4	3	4	3	y	0.50	1	1	1	1	n	-	-	-	-	-	-	0.33	2	4	2	4	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	ENSMUSG00000027474.14	Ccm2l	chr2	protein_coding	cerebral cavernous malformation 2-like
novel_NIR_10716	chr2	152918384	152919387	+	152918384	152920402	A3SS	ENSMUST00000127898.9	novel	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.40	2	3	2	3	y	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	ENSMUSG00000027474.14	Ccm2l	chr2	protein_coding	cerebral cavernous malformation 2-like
novel_NIR_10717	chr2	153184784	153187038	-	153184784	153185090	5pMXE	ENSMUST00000125345.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000073236.5	2500004C02Rik	chr2	lncRNA	RIKEN cDNA 2500004C02 gene
novel_NIR_10718	chr2	153184784	153187038	-	153184784	153187541	A5SS	ENSMUST00000128026.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	ENSMUSG00000073236.5	2500004C02Rik	chr2	lncRNA	RIKEN cDNA 2500004C02 gene
novel_NIR_10719	chr2	153187098	153187541	-	153184784	153187541	A3SS	ENSMUST00000128026.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000073236.5	2500004C02Rik	chr2	lncRNA	RIKEN cDNA 2500004C02 gene
novel_NIR_10720	chr2	153187675	153187797	-	153184784	153187797	A3SS	ENSMUST00000139636.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000073236.5	2500004C02Rik	chr2	lncRNA	RIKEN cDNA 2500004C02 gene
novel_NIR_10721	chr2	153188310	153189901	+	153189695	153189901	5pMXE	ENSMUST00000123215.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000042548.15	Asxl1	chr2	protein_coding	ASXL transcriptional regulator 1
novel_NIR_10722	chr2	153471163	153474514	-	153474182	153474514	A3SS&ES	ENSMUST00000109782.2	novel	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.25	2	6	2	6	y	0.25	3	9	3	9	y	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.07	1	14	1	14	n	0.15	2	11	2	11	y	0.00	0	9	0	9	n	0.22	2	7	2	7	y	ENSMUSG00000056941.18	Commd7	chr2	protein_coding	COMM domain containing 7
novel_NIR_10723	chr2	153471166	153473120	-	153471166	153474108	A5SS	ENSMUST00000109782.2	novel	0.20	1	4	1	4	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.36	4	7	4	7	n	0.06	1	15	1	15	n	0.00	0	5	0	5	n	0.67	4	2	4	2	n	0.00	0	1	0	1	n	0.14	1	6	1	6	n	0.36	4	7	4	7	n	0.22	2	7	2	7	y	0.00	0	10	0	10	n	ENSMUSG00000056941.18	Commd7	chr2	protein_coding	COMM domain containing 7
novel_NIR_10724	chr2	153471166;153473273	153473120;153474514	-	153471166;153474182	153474108;153474514	MXE	ENSMUST00000109782.2	novel	0.18	1.0	4.5	1;1	4;5	n	0.27	1.5	4.0	0;3	5;3	n	0.00	0.0	5.5	0;0	7;4	n	0.28	2.5	6.5	4;1	7;6	n	0.04	0.5	12.0	1;0	15;9	n	0.00	0.0	3.5	0;0	5;2	n	0.70	3.5	1.5	4;3	2;1	y	0.20	0.5	2.0	0;1	1;3	n	0.05	0.5	10.0	1;0	6;14	n	0.28	3.5	9.0	4;3	7;11	y	0.11	1.0	8.0	2;0	7;9	n	0.00	0.0	8.5	0;0	10;7	n	ENSMUSG00000056941.18	Commd7	chr2	protein_coding	COMM domain containing 7
novel_NIR_10725	chr2	153473273	153474514	-	153474182	153474514	A3SS&ES	ENSMUST00000109782.2	novel	0.17	1	5	1	5	n	0.50	3	3	3	3	y	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.75	3	1	3	1	n	0.25	1	3	1	3	n	0.00	0	14	0	14	n	0.21	3	11	3	11	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	ENSMUSG00000056941.18	Commd7	chr2	protein_coding	COMM domain containing 7
novel_NIR_10726	chr2	153489380	153503345	+	153491660	153503345	5pMXE	ENSMUST00000072997.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000027478.16	Dnmt3b	chr2	protein_coding	DNA methyltransferase 3B
novel_NIR_10727	chr2	153586374	153588176	+	153583574	153588176	A5SS	ENSMUST00000123795.8	novel	0.00	0	1	0	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027479.15	Mapre1	chr2	protein_coding	microtubule-associated protein, RP/EB family, member 1
novel_NIR_10728	chr2	153586374	153588176	+	153587730	153588176	5pMXE	ENSMUST00000123570.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027479.15	Mapre1	chr2	protein_coding	microtubule-associated protein, RP/EB family, member 1
novel_NIR_10729	chr2	153658358	153664454	+	153658358;153662419	153662215;153664454	ES	ENSMUST00000126656.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000044083.13	Efcab8	chr2	protein_coding	EF-hand calcium binding domain 8
novel_NIR_10730	chr2	154187935	154190575	-	154187935	154192738	A5SS	ENSMUST00000148289.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027487.12	Cdk5rap1	chr2	protein_coding	CDK5 regulatory subunit associated protein 1
novel_NIR_10731	chr2	154480142	154481875	+	154480142	154483236	A3SS	ENSMUST00000081926.13	novel	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.22	2	7	2	7	y	ENSMUSG00000059842.13	Zfp341	chr2	protein_coding	zinc finger protein 341
novel_NIR_10732	chr2	154482044	154483236	+	154480142	154483236	A5SS	ENSMUST00000081926.13	novel	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.25	2	6	2	6	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	ENSMUSG00000059842.13	Zfp341	chr2	protein_coding	zinc finger protein 341
novel_NIR_10733	chr2	154633468	154689169	+	154633468	154793114	A3SS	ENSMUST00000137333.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027596.11	a	chr2	protein_coding	nonagouti
novel_NIR_10734	chr2	154636387	154699189	+	154633151	154699189	A5SS	ENSMUST00000125872.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000027593.16	Raly	chr2	protein_coding	hnRNP-associated with lethal yellow
novel_NIR_10735	chr2	154663009	154689169	+	154663009;154686418	154686366;154689169	ES	ENSMUST00000152038.8	novel	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	1.00	5	0.0	5	0;0	y	1.00	1	0.0	1	0;0	n	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027593.16	Raly	chr2	protein_coding	hnRNP-associated with lethal yellow
novel_NIR_10736	chr2	154689310	154699189	+	154633151	154699189	A5SS	ENSMUST00000125872.8	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	0.78	7	2	7	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.80	4	1	4	1	y	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.67	2	1	2	1	y	0.57	4	3	4	3	y	ENSMUSG00000027593.16	Raly	chr2	protein_coding	hnRNP-associated with lethal yellow
novel_NIR_10737	chr2	154691918	154699189	+	154633151	154699189	A5SS	ENSMUST00000125872.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000027593.16	Raly	chr2	protein_coding	hnRNP-associated with lethal yellow
novel_NIR_10738	chr2	154909342	154910748	-	154909282	154910748	A3SS	ENSMUST00000137242.2	novel	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.27	3	8	3	8	y	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	ENSMUSG00000027597.16	Ahcy	chr2	protein_coding	S-adenosylhomocysteine hydrolase
novel_NIR_10739	chr2	154923394	154923539	+	154923394	154924154	A3SS	ENSMUST00000209399.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.43	3	4	3	4	y	ENSMUSG00000109877.2	Gm45609	chr2	lncRNA	predicted gene 45609
novel_NIR_10740	chr2	154923394	154924178	+	154923394	154924154	A3SS	ENSMUST00000209399.2	novel	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000109877.2	Gm45609	chr2	lncRNA	predicted gene 45609
novel_NIR_10741	chr2	154924261	154924747	+	154924261	154938124	A3SS	ENSMUST00000211423.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	ENSMUSG00000109877.2	Gm45609	chr2	lncRNA	predicted gene 45609
novel_NIR_10742	chr2	154924261	154924747	+	154924261	154938138	A3SS	ENSMUST00000209674.2	novel	0.00	0	3	0	3	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.75	3	1	3	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.60	6	4	6	4	y	0.67	2	1	2	1	y	0.67	2	1	2	1	y	ENSMUSG00000109877.2	Gm45609	chr2	lncRNA	predicted gene 45609
novel_NIR_10743	chr2	154924261	154924747	+	154924261	154940679	A3SS	ENSMUST00000209399.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.86	6	1	6	1	y	1.00	2	0	2	0	y	0.67	2	1	2	1	y	ENSMUSG00000109877.2	Gm45609	chr2	lncRNA	predicted gene 45609
novel_NIR_10744	chr2	155078813	155084651	+	155078860	155084651	A5SS	ENSMUST00000135831.2	novel	0.00	0	12	0	12	n	0.25	2	6	2	6	y	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.18	2	9	2	9	y	0.11	1	8	1	8	n	0.21	3	11	3	11	y	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.09	1	10	1	10	n	0.20	2	8	2	8	y	ENSMUSG00000047459.15	Dynlrb1	chr2	protein_coding	dynein light chain roadblock-type 1
novel_NIR_10745	chr2	155118922	155119018	+	155118566	155119018	A5SS	ENSMUST00000145086.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027602.10	Map1lc3a	chr2	protein_coding	microtubule-associated protein 1 light chain 3 alpha
novel_NIR_10746	chr2	155225047	155227210	+	155223112	155227210	A5SS	ENSMUST00000151466.8	novel	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	0.75	3	1	3	1	y	0.75	6	2	6	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000038375.16	Trp53inp2	chr2	protein_coding	transformation related protein 53 inducible nuclear protein 2
novel_NIR_10747	chr2	155225047	155227210	+	155224849	155227210	A5SS	ENSMUST00000134218.2	novel	0.42	5	7	5	7	y	0.07	1	14	1	14	n	0.05	2	41	2	41	n	0.11	3	24	3	24	n	0.07	3	41	3	41	n	0.06	2	33	2	33	n	0.09	3	32	3	32	n	0.15	6	34	6	34	n	0.00	0	15	0	15	n	0.03	1	29	1	29	n	0.00	0	7	0	7	n	0.12	1	7	1	7	n	ENSMUSG00000038375.16	Trp53inp2	chr2	protein_coding	transformation related protein 53 inducible nuclear protein 2
novel_NIR_10748	chr2	155227384	155227805	+	155227384	155227921	A3SS	ENSMUST00000174685.8	novel	0.00	0	6	0	6	n	0.22	2	7	2	7	y	0.00	0	21	0	21	n	0.00	0	18	0	18	n	0.00	0	24	0	24	n	0.00	0	24	0	24	n	0.00	0	20	0	20	n	0.00	0	25	0	25	n	0.00	0	7	0	7	n	0.00	0	22	0	22	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	ENSMUSG00000038375.16	Trp53inp2	chr2	protein_coding	transformation related protein 53 inducible nuclear protein 2
novel_NIR_10749	chr2	155244660	155253445	-	155244660;155250370	155247395;155253445	ES	ENSMUST00000043126.12	novel	0.13	4	26.5	4	44;9	n	0.19	3	13.0	3	20;6	y	0.00	0	43.0	0	59;27	n	0.00	0	28.0	0	27;29	n	0.03	1	30.0	1	37;23	n	0.06	1	17.0	1	19;15	n	0.03	1	31.0	1	47;15	n	0.00	0	17.0	0	21;13	n	0.04	1	26.0	1	37;15	n	0.07	3	39.0	3	58;20	n	0.00	0	21.0	0	35;7	n	0.03	1	33.5	1	48;19	n	ENSMUSG00000038369.15	Ncoa6	chr2	protein_coding	nuclear receptor coactivator 6
novel_NIR_10750	chr2	155244660	155253445	-	155250370	155253445	3pMXE	ENSMUST00000123293.8	novel	0.31	4	9	4	9	y	0.33	3	6	3	6	y	0.00	0	27	0	27	n	0.00	0	29	0	29	n	0.04	1	23	1	23	n	0.06	1	15	1	15	n	0.06	1	15	1	15	n	0.00	0	13	0	13	n	0.06	1	15	1	15	n	0.13	3	20	3	20	n	0.00	0	7	0	7	n	0.05	1	19	1	19	n	ENSMUSG00000038369.15	Ncoa6	chr2	protein_coding	nuclear receptor coactivator 6
novel_NIR_10751	chr2	155260908	155262887	-	155260944	155262887	A3SS	ENSMUST00000043126.12	novel	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.17	3	15	3	15	y	0.00	0	2	0	2	n	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.17	3	15	3	15	y	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	21	0	21	n	0.00	0	5	0	5	n	0.10	1	9	1	9	n	ENSMUSG00000038369.15	Ncoa6	chr2	protein_coding	nuclear receptor coactivator 6
novel_NIR_10752	chr2	155260911	155262887	-	155260944	155262887	A3SS	ENSMUST00000043126.12	novel	0.25	3	9	3	9	y	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.00	0	2	0	2	n	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.06	1	15	1	15	n	0.00	0	6	0	6	n	0.17	2	10	2	10	y	0.09	2	21	2	21	n	0.17	1	5	1	5	n	0.00	0	9	0	9	n	ENSMUSG00000038369.15	Ncoa6	chr2	protein_coding	nuclear receptor coactivator 6
novel_NIR_10753	chr2	155260944	155263320	-	155260944	155262887	A5SS	ENSMUST00000043126.12	novel	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.00	0	2	0	2	n	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.25	2	6	2	6	y	0.00	0	10	0	10	n	0.00	0	21	0	21	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	ENSMUSG00000038369.15	Ncoa6	chr2	protein_coding	nuclear receptor coactivator 6
novel_NIR_10754	chr2	155397911	155398178	+	155397911	155398698	A3SS	ENSMUST00000151781.2	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.67	2	1	2	1	y	1.00	2	0	2	0	y	ENSMUSG00000027605.19	Acss2	chr2	protein_coding	acyl-CoA synthetase short-chain family member 2
novel_NIR_10755	chr2	155403740	155405190	+	155403740	155415083	A3SS	ENSMUST00000065973.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027605.19	Acss2	chr2	protein_coding	acyl-CoA synthetase short-chain family member 2
novel_NIR_10756	chr2	155423953	155429390	-	155423953	155424219	5pMXE	ENSMUST00000137305.2	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000027610.18	Gss	chr2	protein_coding	glutathione synthetase
novel_NIR_10757	chr2	155423953	155429390	-	155423953	155424403	5pMXE	ENSMUST00000126322.8	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000027610.18	Gss	chr2	protein_coding	glutathione synthetase
novel_NIR_10758	chr2	155423953	155429390	-	155423953	155434614	A5SS	ENSMUST00000130881.8	novel	0.20	1	4	1	4	n	0.33	2	4	2	4	y	0.29	4	10	4	10	y	0.00	0	5	0	5	n	0.40	2	3	2	3	y	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.50	3	3	3	3	y	0.62	5	3	5	3	y	0.00	0	2	0	2	n	0.38	3	5	3	5	y	ENSMUSG00000027610.18	Gss	chr2	protein_coding	glutathione synthetase
novel_NIR_10759	chr2	155429496	155429893	-	155429496	155433937	A5SS	ENSMUST00000155347.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027610.18	Gss	chr2	protein_coding	glutathione synthetase
novel_NIR_10760	chr2	155429496	155431535	-	155429496	155433937	A5SS	ENSMUST00000155347.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027610.18	Gss	chr2	protein_coding	glutathione synthetase
novel_NIR_10761	chr2	155429496	155434555	-	155429496	155433937	5pMXE	ENSMUST00000155347.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027610.18	Gss	chr2	protein_coding	glutathione synthetase
novel_NIR_10762	chr2	155486979	155489613	-	155486979	155495413	A5SS	ENSMUST00000140370.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038324.14	Trpc4ap	chr2	protein_coding	transient receptor potential cation channel, subfamily C, member 4 associated protein
novel_NIR_10763	chr2	155515038	155533595	-	155515038	155533751	A5SS	ENSMUST00000136764.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.60	3	2	3	2	y	1.00	3	0	3	0	y	0.71	5	2	5	2	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	4	0	4	0	y	0.75	3	1	3	1	y	-	-	-	-	-	-	ENSMUSG00000038324.14	Trpc4ap	chr2	protein_coding	transient receptor potential cation channel, subfamily C, member 4 associated protein
novel_NIR_10764	chr2	155515038	155533709	-	155515038	155533751	A5SS	ENSMUST00000136764.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000038324.14	Trpc4ap	chr2	protein_coding	transient receptor potential cation channel, subfamily C, member 4 associated protein
novel_NIR_10765	chr2	155552888	155554639	-	155552888	155554632	A5SS	ENSMUST00000148571.8	novel	0.33	2	4	2	4	y	0.18	2	9	2	9	y	0.14	3	19	3	19	n	0.11	1	8	1	8	n	0.40	8	12	8	12	y	0.00	0	10	0	10	n	0.45	5	6	5	6	y	0.31	4	9	4	9	y	0.50	4	4	4	4	y	0.30	3	7	3	7	y	0.12	1	7	1	7	n	0.11	1	8	1	8	n	ENSMUSG00000038312.11	Edem2	chr2	protein_coding	ER degradation enhancer, mannosidase alpha-like 2
novel_NIR_10766	chr2	155552888	155554639	-	155552888	155555245	A5SS	ENSMUST00000139868.2	novel	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	8	0	8	0	n	-	-	-	-	-	-	0.71	5	2	5	2	y	1.00	4	0	4	0	y	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000038312.11	Edem2	chr2	protein_coding	ER degradation enhancer, mannosidase alpha-like 2
novel_NIR_10767	chr2	155552888;155555043	155554639;155555245	-	155552888	155555245	cassetteExon	ENSMUST00000139868.2	novel	1.00	1.0	0	2;0	0	n	1.00	1.0	0	2;0	0	n	1.00	1.5	0	3;0	0	n	1.00	0.5	0	1;0	0	n	1.00	5.0	0	8;2	0	y	-	-	-	-	-	-	0.56	2.5	2	5;0	2	n	1.00	2.0	0	4;0	0	n	1.00	2.0	0	4;0	0	n	1.00	1.5	0	3;0	0	n	1.00	0.5	0	1;0	0	n	1.00	0.5	0	1;0	0	n	ENSMUSG00000038312.11	Edem2	chr2	protein_coding	ER degradation enhancer, mannosidase alpha-like 2
novel_NIR_10768	chr2	155668130	155668318	-	155668130	155668566	A5SS	ENSMUST00000134278.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	ENSMUSG00000027613.16	Eif6	chr2	protein_coding	eukaryotic translation initiation factor 6
novel_NIR_10769	chr2	155669144	155670434	+	155669144	155669515	3pMXE	ENSMUST00000141926.2	novel	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.33	1	2	1	2	n	0.67	2	1	2	1	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	ENSMUSG00000086754.2	Gm16098	chr2	lncRNA	predicted gene 16098
novel_NIR_10770	chr2	155700109	155743218	-	155700109	155752277	A5SS	ENSMUST00000006036.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000005882.19	Uqcc1	chr2	protein_coding	ubiquinol-cytochrome c reductase complex assembly factor 1
novel_NIR_10771	chr2	155711300	155729029	-	155693392	155729029	A3SS	ENSMUST00000109632.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.67	4	2	4	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000005882.19	Uqcc1	chr2	protein_coding	ubiquinol-cytochrome c reductase complex assembly factor 1
novel_NIR_10772	chr2	155711300	155729029	-	155712732	155729029	3pMXE	ENSMUST00000146995.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000005882.19	Uqcc1	chr2	protein_coding	ubiquinol-cytochrome c reductase complex assembly factor 1
novel_NIR_10773	chr2	155729137	155751273	-	155729137	155771933	A5SS	ENSMUST00000159238.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000005882.19	Uqcc1	chr2	protein_coding	ubiquinol-cytochrome c reductase complex assembly factor 1
novel_NIR_10774	chr2	155763647	155771889	-	155763647	155766378	A5SS&ES	ENSMUST00000142655.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000005882.19	Uqcc1	chr2	protein_coding	ubiquinol-cytochrome c reductase complex assembly factor 1
novel_NIR_10775	chr2	155763647	155771889	-	155763647	155772093	A5SS	ENSMUST00000162749.8	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000005882.19	Uqcc1	chr2	protein_coding	ubiquinol-cytochrome c reductase complex assembly factor 1
novel_NIR_10776	chr2	155817784	155818068	+	155817784	155818004	A3SS	ENSMUST00000149905.8	novel	0.00	0	8	0	8	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.11	1	8	1	8	n	0.12	1	7	1	7	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.22	2	7	2	7	y	ENSMUSG00000038241.17	Cep250	chr2	protein_coding	centrosomal protein 250
novel_NIR_10777	chr2	155830455	155830914	-	155824083	155830914	A3SS	ENSMUST00000124812.8	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000074646.11	6430550D23Rik	chr2	protein_coding	RIKEN cDNA 6430550D23 gene
novel_NIR_10778	chr2	155830805	155830914	-	155824083	155830914	A3SS	ENSMUST00000124812.8	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000074646.11	6430550D23Rik	chr2	protein_coding	RIKEN cDNA 6430550D23 gene
novel_NIR_10779	chr2	155831519	155834809	-	155831519	155836486	A5SS	ENSMUST00000124812.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.50	1	1	1	1	n	ENSMUSG00000074646.11	6430550D23Rik	chr2	protein_coding	RIKEN cDNA 6430550D23 gene
novel_NIR_10780	chr2	155834694	155836765	+	155834694;155836604	155836491;155836765	ES	ENSMUST00000109619.9	novel	0.00	0	14.5	0	14;15	n	0.00	0	14.0	0	11;17	n	0.00	0	3.5	0	2;5	n	0.00	0	14.5	0	9;20	n	0.00	0	17.5	0	18;17	n	0.31	2	4.5	2	3;6	y	0.06	1	14.5	1	13;16	n	0.00	0	4.0	0	0;8	n	0.13	2	13.5	2	14;13	n	0.00	0	24.0	0	25;23	n	0.00	0	15.5	0	19;12	n	0.00	0	16.5	0	13;20	n	ENSMUSG00000038241.17	Cep250	chr2	protein_coding	centrosomal protein 250
novel_NIR_10781	chr2	155834924	155836486	-	155831519	155836486	A3SS	ENSMUST00000124812.8	novel	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000074646.11	6430550D23Rik	chr2	protein_coding	RIKEN cDNA 6430550D23 gene
novel_NIR_10782	chr2	155845905	155849282	-	155845905	155846032	5pMXE	ENSMUST00000141437.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000074646.11	6430550D23Rik	chr2	protein_coding	RIKEN cDNA 6430550D23 gene
novel_NIR_10783	chr2	155845905	155849282	-	155845905	155846261	5pMXE	ENSMUST00000109617.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000074646.11	6430550D23Rik	chr2	protein_coding	RIKEN cDNA 6430550D23 gene
novel_NIR_10784	chr2	155845905	155849282	-	155845905	155849800	A5SS	ENSMUST00000140657.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000074646.11	6430550D23Rik	chr2	protein_coding	RIKEN cDNA 6430550D23 gene
novel_NIR_10785	chr2	155853216	155857909	+	155857311	155857909	A5SS&ES	ENSMUST00000088650.11	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000005881.14	Ergic3	chr2	protein_coding	ERGIC and golgi 3
novel_NIR_10786	chr2	155858122	155858626	+	155858456	155858626	5pMXE	ENSMUST00000150970.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000005881.14	Ergic3	chr2	protein_coding	ERGIC and golgi 3
novel_NIR_10787	chr2	155921384	155953518	-	155921384	155938338	5pMXE	ENSMUST00000127956.9	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000098950.8	Gm28036	chr2	protein_coding	predicted gene, 28036
novel_NIR_10788	chr2	155921384	155953518	-	155921384	155938746	5pMXE	ENSMUST00000183972.2	novel	0.67	2	1	2	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000098950.8	Gm28036	chr2	protein_coding	predicted gene, 28036
novel_NIR_10789	chr2	155921384	155953518	-	155921384	155940105	A5SS&ES	ENSMUST00000184899.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000098950.8	Gm28036	chr2	protein_coding	predicted gene, 28036
novel_NIR_10790	chr2	155921384	155953518	-	155921384	155940150	A5SS&ES	ENSMUST00000133921.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000074643.13	Cpne1	chr2	protein_coding	copine I
novel_NIR_10791	chr2	155921384	155953518	-	155921384	155944374	5pMXE	ENSMUST00000184152.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000074643.13	Cpne1	chr2	protein_coding	copine I
novel_NIR_10792	chr2	155921384	155953518	-	155921384	155945269	A5SS&ES	ENSMUST00000184265.8	novel	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.20	2	8	2	8	y	0.00	0	2	0	2	n	0.10	1	9	1	9	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	ENSMUSG00000074643.13	Cpne1	chr2	protein_coding	copine I
novel_NIR_10793	chr2	155921384	155953518	-	155921384	155953748	A5SS	ENSMUST00000079312.10	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000074643.13	Cpne1	chr2	protein_coding	copine I
novel_NIR_10794	chr2	155921384	155953518	-	155921384	155953826	A5SS	ENSMUST00000142960.9	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000074643.13	Cpne1	chr2	protein_coding	copine I
novel_NIR_10795	chr2	155945349	155953518	-	155945349	155953706	A5SS	ENSMUST00000184265.8	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.08	1	11	1	11	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.33	2	4	2	4	y	0.00	0	4	0	4	n	0.40	2	3	2	3	y	ENSMUSG00000074643.13	Cpne1	chr2	protein_coding	copine I
novel_NIR_10796	chr2	155945349	155953518	-	155945349	155953748	A5SS	ENSMUST00000154889.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000074643.13	Cpne1	chr2	protein_coding	copine I
novel_NIR_10797	chr2	155945349	155953518	-	155945349	155953826	A5SS	ENSMUST00000138068.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000089824.11	Rbm12	chr2	protein_coding	RNA binding motif protein 12
novel_NIR_10798	chr2	155945349	155953518	-	155945349	155967201	A5SS	ENSMUST00000162612.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000098950.8	Gm28036	chr2	protein_coding	predicted gene, 28036
novel_NIR_10799	chr2	155968363	155968931	-	155968254	155968931	A3SS	ENSMUST00000160165.8	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	6	0	6	0	y	1.00	7	0	7	0	y	1.00	5	0	5	0	y	1.00	11	0	11	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	0.75	6	2	6	2	y	1.00	7	0	7	0	y	ENSMUSG00000098950.8	Gm28036	chr2	protein_coding	predicted gene, 28036
novel_NIR_10800	chr2	156009670	156012251	-	156009670	156009849	A5SS&ES	ENSMUST00000150272.8	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027620.17	Rbm39	chr2	protein_coding	RNA binding motif protein 39
novel_NIR_10801	chr2	156009670	156012251	-	156009670	156010913	5pMXE	ENSMUST00000131625.8	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027620.17	Rbm39	chr2	protein_coding	RNA binding motif protein 39
novel_NIR_10802	chr2	156016128	156018323	-	156014942	156018323	A3SS	ENSMUST00000146549.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027620.17	Rbm39	chr2	protein_coding	RNA binding motif protein 39
novel_NIR_10803	chr2	156016128	156018323	-	156016088	156018323	A3SS	ENSMUST00000147098.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027620.17	Rbm39	chr2	protein_coding	RNA binding motif protein 39
novel_NIR_10804	chr2	156016128	156019256	-	156016088	156019256	A3SS	ENSMUST00000153514.8	novel	0.29	2	5	2	5	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.10	1	9	1	9	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000027620.17	Rbm39	chr2	protein_coding	RNA binding motif protein 39
novel_NIR_10805	chr2	156016128	156019256	-	156016894	156019256	3pMXE	ENSMUST00000154677.8	novel	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.25	1	3	1	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000027620.17	Rbm39	chr2	protein_coding	RNA binding motif protein 39
novel_NIR_10806	chr2	156016128	156019256	-	156018377	156019256	A3SS&ES	ENSMUST00000146549.8	novel	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000027620.17	Rbm39	chr2	protein_coding	RNA binding motif protein 39
novel_NIR_10807	chr2	156183660	156189455	+	156183660	156195115	A3SS	ENSMUST00000037096.9	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000038085.14	Cnbd2	chr2	protein_coding	cyclic nucleotide binding domain containing 2
novel_NIR_10808	chr2	156700618	156704519	-	156686809	156704519	A3SS	ENSMUST00000185402.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000085741.9	5430405H02Rik	chr2	lncRNA	RIKEN cDNA 5430405H02 gene
novel_NIR_10809	chr2	156700618	156704519	-	156695938	156704519	A3SS	ENSMUST00000176134.2	novel	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000085741.9	5430405H02Rik	chr2	lncRNA	RIKEN cDNA 5430405H02 gene
novel_NIR_10810	chr2	156700618	156704519	-	156696224	156704519	A3SS	ENSMUST00000153616.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000085741.9	5430405H02Rik	chr2	lncRNA	RIKEN cDNA 5430405H02 gene
novel_NIR_10811	chr2	156708656	156714258	+	156705337	156714258	A5SS	ENSMUST00000152551.2	novel	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	1.00	3	0	3	0	y	0.50	2	2	2	2	y	0.25	1	3	1	3	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.25	1	3	1	3	n	0.56	5	4	5	4	y	ENSMUSG00000027637.4	Rab5if	chr2	protein_coding	RAB5 interacting factor
novel_NIR_10812	chr2	156713000	156714258	+	156705337	156714258	A5SS	ENSMUST00000152551.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.67	4	2	4	2	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.60	3	2	3	2	y	0.25	1	3	1	3	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000027637.4	Rab5if	chr2	protein_coding	RAB5 interacting factor
novel_NIR_10813	chr2	156778066	156779247	-	156776909	156779247	A3SS	ENSMUST00000069600.13	novel	0.00	0	27	0	27	n	0.23	3	10	3	10	y	0.00	0	28	0	28	n	0.00	0	31	0	31	n	0.00	0	47	0	47	n	0.00	0	18	0	18	n	0.03	1	37	1	37	n	0.00	0	21	0	21	n	0.00	0	19	0	19	n	0.00	0	50	0	50	n	0.00	0	23	0	23	n	0.00	0	32	0	32	n	ENSMUSG00000027634.15	Ndrg3	chr2	protein_coding	N-myc downstream regulated gene 3
novel_NIR_10814	chr2	156847793	156848651	-	156847793	156848180	5pMXE	ENSMUST00000124671.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000027635.16	Dsn1	chr2	protein_coding	DSN1 homolog, MIS12 kinetochore complex component
novel_NIR_10815	chr2	156847793	156848651	-	156847793	156848895	A5SS	ENSMUST00000103129.9	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000027635.16	Dsn1	chr2	protein_coding	DSN1 homolog, MIS12 kinetochore complex component
novel_NIR_10816	chr2	157105004	157106993	-	157100027	157106993	A3SS	ENSMUST00000143663.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000074627.12	Mroh8	chr2	protein_coding	maestro heat-like repeat family member 8
novel_NIR_10817	chr2	157163792	157167636	+	157163792	157165143	A3SS&ES	ENSMUST00000029171.6	novel	0.74	14	5	14	5	y	0.75	12	4	12	4	y	0.78	31	9	31	9	y	0.89	16	2	16	2	y	0.83	19	4	19	4	y	0.33	3	6	3	6	y	0.66	23	12	23	12	y	0.50	3	3	3	3	y	0.83	19	4	19	4	y	0.00	0	8	0	8	n	0.74	23	8	23	8	y	0.00	0	8	0	8	n	ENSMUSG00000027642.16	Rpn2	chr2	protein_coding	ribophorin II
novel_NIR_10818	chr2	157165190	157165446	+	157165190	157167631	A3SS	ENSMUST00000029171.6	novel	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.12	1	7	1	7	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.29	2	5	2	5	y	0.00	0	9	0	9	n	0.00	0	4	0	4	n	ENSMUSG00000027642.16	Rpn2	chr2	protein_coding	ribophorin II
novel_NIR_10819	chr2	157386348	157387093	-	157386352	157387093	A3SS	ENSMUST00000155674.2	novel	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.25	1	3	1	3	n	0.20	1	4	1	4	n	0.67	2	1	2	1	y	0.00	0	6	0	6	n	0.54	7	6	7	6	y	0.11	1	8	1	8	n	0.17	1	5	1	5	n	ENSMUSG00000087445.2	Gm14286	chr2	lncRNA	predicted gene 14286
novel_NIR_10820	chr2	157630793	157630912	+	157630382	157630912	A5SS	ENSMUST00000155479.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027649.16	Ctnnbl1	chr2	protein_coding	catenin, beta like 1
novel_NIR_10821	chr2	157632715	157633787	+	157632715	157641359	A3SS	ENSMUST00000156300.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027649.16	Ctnnbl1	chr2	protein_coding	catenin, beta like 1
novel_NIR_10822	chr2	157853216	157870294	-	157851278	157870294	A3SS	ENSMUST00000029179.11	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.33	2	4	2	4	y	ENSMUSG00000027650.13	Tti1	chr2	protein_coding	TELO2 interacting protein 1
novel_NIR_10823	chr2	158199183	158200220	-	158199183	158200125	A5SS	ENSMUST00000152125.8	novel	0.09	1	10	1	10	n	0.33	4	8	4	8	y	0.06	1	15	1	15	n	0.00	0	2	0	2	n	0.13	2	13	2	13	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.25	2	6	2	6	y	0.40	2	3	2	3	y	0.22	2	7	2	7	y	0.00	0	7	0	7	n	ENSMUSG00000085385.8	Snhg17	chr2	lncRNA	small nucleolar RNA host gene 17
novel_NIR_10824	chr2	158199183;158200458	158200220;158201102	-	158199183	158201102	cassetteExon	ENSMUST00000141809.8	novel	0.60	6.0	4	1;11	4	n	0.28	3.5	9	4;3	9	y	0.20	4.5	18	1;8	18	n	0.37	3.5	6	0;7	6	n	0.37	7.0	12	2;12	12	y	0.50	8.0	8	0;16	8	n	0.31	4.5	10	0;9	10	n	0.24	5.0	16	0;10	16	n	0.27	3.0	8	2;4	8	y	0.32	8.5	18	2;15	18	y	0.52	6.5	6	2;11	6	y	0.38	5.0	8	0;10	8	n	ENSMUSG00000085385.8	Snhg17	chr2	lncRNA	small nucleolar RNA host gene 17
novel_NIR_10825	chr2	158200458	158201102	-	158199183	158201102	A3SS	ENSMUST00000141809.8	novel	0.73	11	4	11	4	n	0.25	3	9	3	9	n	0.31	8	18	8	18	n	0.54	7	6	7	6	y	0.50	12	12	12	12	n	0.67	16	8	16	8	y	0.47	9	10	9	10	y	0.38	10	16	10	16	y	0.33	4	8	4	8	n	0.45	15	18	15	18	n	0.65	11	6	11	6	n	0.56	10	8	10	8	y	ENSMUSG00000085385.8	Snhg17	chr2	lncRNA	small nucleolar RNA host gene 17
novel_NIR_10826	chr2	158200458	158201102	-	158200260	158201102	A3SS	ENSMUST00000152125.8	novel	1.00	11	0	11	0	y	0.50	3	3	3	3	y	0.80	8	2	8	2	y	0.88	7	1	7	1	y	1.00	12	0	12	0	y	1.00	16	0	16	0	y	1.00	9	0	9	0	y	1.00	10	0	10	0	y	1.00	4	0	4	0	y	1.00	15	0	15	0	y	1.00	11	0	11	0	y	0.91	10	1	10	1	y	ENSMUSG00000085385.8	Snhg17	chr2	lncRNA	small nucleolar RNA host gene 17
novel_NIR_10827	chr2	158201251	158201677	-	158201251	158202384	A5SS	ENSMUST00000133449.8	novel	1.00	1	0	1	0	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.50	4	4	4	4	y	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	ENSMUSG00000085385.8	Snhg17	chr2	lncRNA	small nucleolar RNA host gene 17
novel_NIR_10828	chr2	158201352	158201677	-	158201352	158202379	A5SS	ENSMUST00000141809.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.75	3	1	3	1	y	1.00	5	0	5	0	y	0.33	1	2	1	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000085385.8	Snhg17	chr2	lncRNA	small nucleolar RNA host gene 17
novel_NIR_10829	chr2	158201352	158201677	-	158201352	158202384	A5SS	ENSMUST00000151331.2	novel	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.14	2	12	2	12	n	0.40	2	3	2	3	y	0.00	0	11	0	11	n	0.33	2	4	2	4	y	0.38	3	5	3	5	y	0.45	5	6	5	6	y	0.12	1	7	1	7	n	0.29	2	5	2	5	y	0.00	0	6	0	6	n	0.00	0	9	0	9	n	ENSMUSG00000085385.8	Snhg17	chr2	lncRNA	small nucleolar RNA host gene 17
novel_NIR_10830	chr2	158201352	158201677	-	158201352	158202447	A5SS	ENSMUST00000152125.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.60	3	2	3	2	y	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000085385.8	Snhg17	chr2	lncRNA	small nucleolar RNA host gene 17
novel_NIR_10831	chr2	158225083	158227168	+	158225083	158227193	A3SS	ENSMUST00000239310.2	novel	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.17	2	10	2	10	y	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	ENSMUSG00000044349.17	Snhg11	chr2	protein_coding	small nucleolar RNA host gene 11
novel_NIR_10832	chr2	158225083	158227232	+	158225083	158227193	A3SS	ENSMUST00000239310.2	novel	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.38	5	8	5	8	y	0.00	0	1	0	1	n	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	ENSMUSG00000044349.17	Snhg11	chr2	protein_coding	small nucleolar RNA host gene 11
novel_NIR_10833	chr2	158261883	158262734	+	158252023	158262734	A5SS	ENSMUST00000109486.9	novel	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	ENSMUSG00000027652.16	Ralgapb	chr2	protein_coding	Ral GTPase activating protein, beta subunit (non-catalytic)
novel_NIR_10834	chr2	158261883	158262734	+	158252366	158262734	A5SS	ENSMUST00000156281.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000027652.16	Ralgapb	chr2	protein_coding	Ral GTPase activating protein, beta subunit (non-catalytic)
novel_NIR_10835	chr2	158268287	158272305	+	158268287	158272337	A3SS	ENSMUST00000109486.9	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.15	2	11	2	11	y	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	ENSMUSG00000027652.16	Ralgapb	chr2	protein_coding	Ral GTPase activating protein, beta subunit (non-catalytic)
novel_NIR_10836	chr2	158467436	158468244	+	158467436	158468247	A3SS	ENSMUST00000125390.8	novel	0.00	0	5	0	5	n	0.25	3	9	3	9	y	0.00	0	10	0	10	n	0.07	1	14	1	14	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	14	0	14	n	0.07	1	13	1	13	n	0.00	0	22	0	22	n	ENSMUSG00000037761.17	Actr5	chr2	protein_coding	ARP5 actin-related protein 5
novel_NIR_10837	chr2	158698904	158699000	+	158693742	158699000	A5SS	ENSMUST00000029186.14	novel	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.15	3	17	3	17	y	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	ENSMUSG00000027655.15	Dhx35	chr2	protein_coding	DEAH (Asp-Glu-Ala-His) box polypeptide 35
novel_NIR_10838	chr2	160102935	160159905	-	160153987	160159905	3pMXE	ENSMUST00000138905.2	novel	0.00	0	2	0	2	n	0.67	4	2	4	2	y	0.00	0	3	0	3	n	0.22	2	7	2	7	y	0.17	2	10	2	10	y	0.50	1	1	1	1	n	0.30	3	7	3	7	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.33	2	4	2	4	y	ENSMUSG00000074623.5	Gm826	chr2	protein_coding	predicted gene 826
novel_NIR_10839	chr2	160131719	160159905	-	160153987	160159905	3pMXE	ENSMUST00000138905.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.30	3	7	3	7	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	ENSMUSG00000074623.5	Gm826	chr2	protein_coding	predicted gene 826
novel_NIR_10840	chr2	160159935	160174005	-	160159935	160169016	5pMXE	ENSMUST00000099127.3	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.75	6	2	6	2	y	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	ENSMUSG00000074623.5	Gm826	chr2	protein_coding	predicted gene 826
novel_NIR_10841	chr2	160159935	160174005	-	160159935	160175823	A5SS	ENSMUST00000138905.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	1.00	6	0	6	0	y	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.20	1	4	1	4	n	-	-	-	-	-	-	ENSMUSG00000074623.5	Gm826	chr2	protein_coding	predicted gene 826
novel_NIR_10842	chr2	160159935	160174991	-	160159935	160169016	5pMXE	ENSMUST00000099127.3	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.50	1	1	1	1	n	0.33	2	4	2	4	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000074623.5	Gm826	chr2	protein_coding	predicted gene 826
novel_NIR_10843	chr2	160159935	160174991	-	160159935	160175823	A5SS	ENSMUST00000138905.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	ENSMUSG00000074623.5	Gm826	chr2	protein_coding	predicted gene 826
novel_NIR_10844	chr2	160159935	160175831	-	160159935	160169016	5pMXE	ENSMUST00000099127.3	novel	0.00	0	4	0	4	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.44	4	5	4	5	y	0.67	2	1	2	1	y	0.25	1	3	1	3	n	ENSMUSG00000074623.5	Gm826	chr2	protein_coding	predicted gene 826
novel_NIR_10845	chr2	160159935	160175831	-	160159935	160175823	A5SS	ENSMUST00000138905.2	novel	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.57	4	3	4	3	y	0.33	2	4	2	4	y	1.00	1	0	1	0	n	ENSMUSG00000074623.5	Gm826	chr2	protein_coding	predicted gene 826
novel_NIR_10846	chr2	160159935	160190839	-	160159935	160169016	5pMXE	ENSMUST00000099127.3	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	0.56	5	4	5	4	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000074623.5	Gm826	chr2	protein_coding	predicted gene 826
novel_NIR_10847	chr2	160159935	160190839	-	160159935	160175823	5pMXE	ENSMUST00000138905.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.71	5	2	5	2	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	ENSMUSG00000074623.5	Gm826	chr2	protein_coding	predicted gene 826
novel_NIR_10848	chr2	160159935	160195990	-	160159935	160169016	5pMXE	ENSMUST00000099127.3	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.50	4	4	4	4	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.50	1	1	1	1	n	0.40	2	3	2	3	y	ENSMUSG00000074623.5	Gm826	chr2	protein_coding	predicted gene 826
novel_NIR_10849	chr2	160159935	160195990	-	160159935	160175823	5pMXE	ENSMUST00000138905.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.80	4	1	4	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.20	1	4	1	4	n	1.00	2	0	2	0	y	ENSMUSG00000074623.5	Gm826	chr2	protein_coding	predicted gene 826
novel_NIR_10850	chr2	160449242	160461752	-	160416739	160461752	A3SS	ENSMUST00000109473.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000078956.4	Gm14221	chr2	lncRNA	predicted gene 14221
novel_NIR_10851	chr2	160449242	160461752	-	160449242	160461782	A5SS	ENSMUST00000209603.2	novel	0.50	1	1	1	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.57	4	3	4	3	y	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000078956.4	Gm14221	chr2	lncRNA	predicted gene 14221
novel_NIR_10852	chr2	160573953	160588970	+	160573953	160589695	A3SS	ENSMUST00000151590.8	novel	0.00	0	16	0	16	n	0.08	1	11	1	11	n	0.00	0	21	0	21	n	0.16	3	16	3	16	y	0.00	0	41	0	41	n	0.00	0	14	0	14	n	0.00	0	28	0	28	n	0.00	0	21	0	21	n	0.04	1	24	1	24	n	0.12	3	23	3	23	n	0.00	0	22	0	22	n	0.00	0	29	0	29	n	ENSMUSG00000016933.18	Plcg1	chr2	protein_coding	phospholipase C, gamma 1
novel_NIR_10853	chr2	160598564	160598935	+	160598564	160599134	A3SS	ENSMUST00000124652.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000016933.18	Plcg1	chr2	protein_coding	phospholipase C, gamma 1
novel_NIR_10854	chr2	160613542	160621321	-	160613545	160621321	A3SS	ENSMUST00000103111.9	novel	0.12	5	38	5	38	n	0.17	5	24	5	24	y	0.00	0	34	0	34	n	0.03	1	37	1	37	n	0.04	3	69	3	69	n	0.20	4	16	4	16	y	0.09	5	48	5	48	n	0.12	3	23	3	23	n	0.04	1	23	1	23	n	0.00	0	51	0	51	n	0.04	2	51	2	51	n	0.03	2	69	2	69	n	ENSMUSG00000035877.18	Zhx3	chr2	protein_coding	zinc fingers and homeoboxes 3
novel_NIR_10855	chr2	160613542	160674217	-	160593829	160674217	A3SS	ENSMUST00000133937.9	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000035877.18	Zhx3	chr2	protein_coding	zinc fingers and homeoboxes 3
novel_NIR_10856	chr2	160624299	160683322	-	160624299	160714350	A5SS	ENSMUST00000103111.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035877.18	Zhx3	chr2	protein_coding	zinc fingers and homeoboxes 3
novel_NIR_10857	chr2	160674338	160683322	-	160674338	160701388	A5SS	ENSMUST00000103112.8	novel	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	9	0	9	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	7	0	7	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	ENSMUSG00000035877.18	Zhx3	chr2	protein_coding	zinc fingers and homeoboxes 3
novel_NIR_10858	chr2	160674338	160683322	-	160674338	160714711	A5SS	ENSMUST00000133937.9	novel	0.31	4	9	4	9	y	0.20	1	4	1	4	n	0.17	3	15	3	15	n	0.22	4	14	4	14	y	0.35	9	17	9	17	n	0.17	1	5	1	5	n	0.44	4	5	4	5	y	0.44	7	9	7	9	n	0.50	5	5	5	5	y	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.33	6	12	6	12	y	ENSMUSG00000035877.18	Zhx3	chr2	protein_coding	zinc fingers and homeoboxes 3
novel_NIR_10859	chr2	160674338	160714244	-	160674338	160701388	5pMXE	ENSMUST00000103112.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000035877.18	Zhx3	chr2	protein_coding	zinc fingers and homeoboxes 3
novel_NIR_10860	chr2	160674338	160714244	-	160674338	160714711	A5SS	ENSMUST00000133937.9	novel	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	15	0	15	n	0.18	3	14	3	14	y	0.06	1	17	1	17	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.08	1	12	1	12	n	ENSMUSG00000035877.18	Zhx3	chr2	protein_coding	zinc fingers and homeoboxes 3
novel_NIR_10861	chr2	160674338	160714307	-	160674338	160701388	5pMXE	ENSMUST00000103112.8	novel	1.00	8	0	8	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	8	0	8	0	y	1.00	1	0	1	0	n	1.00	11	0	11	0	y	1.00	4	0	4	0	y	1.00	7	0	7	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	8	0	8	0	y	ENSMUSG00000035877.18	Zhx3	chr2	protein_coding	zinc fingers and homeoboxes 3
novel_NIR_10862	chr2	160674338	160714307	-	160674338	160714711	A5SS	ENSMUST00000133937.9	novel	0.47	8	9	8	9	y	0.20	1	4	1	4	n	0.06	1	15	1	15	n	0.18	3	14	3	14	y	0.32	8	17	8	17	y	0.17	1	5	1	5	n	0.69	11	5	11	5	y	0.31	4	9	4	9	y	0.58	7	5	7	5	y	0.12	2	15	2	15	n	0.00	0	7	0	7	n	0.40	8	12	8	12	y	ENSMUSG00000035877.18	Zhx3	chr2	protein_coding	zinc fingers and homeoboxes 3
novel_NIR_10863	chr2	160674338	160714350	-	160624299	160714350	A3SS	ENSMUST00000103111.9	novel	1.00	3	0	3	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035877.18	Zhx3	chr2	protein_coding	zinc fingers and homeoboxes 3
novel_NIR_10864	chr2	160674338	160714350	-	160674338	160701388	5pMXE	ENSMUST00000103112.8	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035877.18	Zhx3	chr2	protein_coding	zinc fingers and homeoboxes 3
novel_NIR_10865	chr2	160674338	160714350	-	160674338	160714711	A5SS	ENSMUST00000133937.9	novel	0.25	3	9	3	9	y	0.00	0	4	0	4	n	0.00	0	15	0	15	n	0.07	1	14	1	14	n	0.19	4	17	4	17	y	0.17	1	5	1	5	n	0.17	1	5	1	5	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	ENSMUSG00000035877.18	Zhx3	chr2	protein_coding	zinc fingers and homeoboxes 3
novel_NIR_10866	chr2	160674338;160683456	160683322;160714711	-	160674338	160714711	cassetteExon	ENSMUST00000133937.9	novel	0.18	2.0	9	4;0	9	n	0.20	1.0	4	1;1	4	n	0.14	2.5	15	3;2	15	n	0.12	2.0	14	4;0	14	n	0.24	5.5	17	9;2	17	y	0.17	1.0	5	1;1	5	n	0.29	2.0	5	4;0	5	n	0.33	4.5	9	7;2	9	y	0.33	2.5	5	5;0	5	n	0.12	2.0	15	0;4	15	n	0.18	1.5	7	0;3	7	n	0.20	3.0	12	6;0	12	n	ENSMUSG00000035877.18	Zhx3	chr2	protein_coding	zinc fingers and homeoboxes 3
novel_NIR_10867	chr2	160683456	160714307	-	160683456	160716284	A5SS	ENSMUST00000142212.4	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000085303.4	Gm16751	chr2	lncRNA	predicted gene, 16751
novel_NIR_10868	chr2	160683456	160714711	-	160674338	160714711	A3SS	ENSMUST00000133937.9	novel	0.00	0	9	0	9	n	0.20	1	4	1	4	n	0.12	2	15	2	15	n	0.00	0	14	0	14	n	0.11	2	17	2	17	n	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.18	2	9	2	9	n	0.00	0	5	0	5	n	0.21	4	15	4	15	y	0.30	3	7	3	7	y	0.00	0	12	0	12	n	ENSMUSG00000035877.18	Zhx3	chr2	protein_coding	zinc fingers and homeoboxes 3
novel_NIR_10869	chr2	160683456	160714711	-	160683456	160716284	A5SS	ENSMUST00000142212.4	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000085303.4	Gm16751	chr2	lncRNA	predicted gene, 16751
novel_NIR_10870	chr2	160743796	160744471	+	160743796	160744483	A3SS	ENSMUST00000109456.9	novel	0.17	2	10	2	10	y	0.00	0	6	0	6	n	0.00	0	17	0	17	n	0.00	0	11	0	11	n	0.00	0	21	0	21	n	0.00	0	21	0	21	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.10	1	9	1	9	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	15	0	15	n	ENSMUSG00000027412.13	Lpin3	chr2	protein_coding	lipin 3
novel_NIR_10871	chr2	160806714	160807089	-	160803934	160807089	A3SS	ENSMUST00000039782.14	novel	1.00	5	0	5	0	y	0.62	5	3	5	3	y	0.12	1	7	1	7	n	0.17	1	5	1	5	n	0.30	3	7	3	7	y	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.25	1	3	1	3	n	0.00	0	11	0	11	n	0.17	1	5	1	5	n	0.50	3	3	3	3	y	ENSMUSG00000057133.15	Chd6	chr2	protein_coding	chromodomain helicase DNA binding protein 6
novel_NIR_10872	chr2	160811470	160812066	-	160811475	160812066	A3SS	ENSMUST00000039782.14	novel	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.11	1	8	1	8	n	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.00	0	5	0	5	n	ENSMUSG00000057133.15	Chd6	chr2	protein_coding	chromodomain helicase DNA binding protein 6
novel_NIR_10873	chr2	160856259	160857781	-	160856259	160859096	A5SS	ENSMUST00000039782.14	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.00	0	9	0	9	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	ENSMUSG00000057133.15	Chd6	chr2	protein_coding	chromodomain helicase DNA binding protein 6
novel_NIR_10874	chr2	162831608	162833335	+	162830116	162833335	A5SS	ENSMUST00000117123.2	novel	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	2	2	2	2	y	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	0.00	0	1	0	1	n	ENSMUSG00000017868.17	Sgk2	chr2	protein_coding	serum/glucocorticoid regulated kinase 2
novel_NIR_10875	chr2	163325525	163338487	-	163336228	163338487	3pMXE	ENSMUST00000125811.2	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.22	2	7	2	7	y	0.33	1	2	1	2	n	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	ENSMUSG00000046840.17	Hnf4aos	chr2	lncRNA	hepatic nuclear factor 4 alpha, opposite strand
novel_NIR_10876	chr2	163338766	163383423	-	163338551	163383423	A3SS	ENSMUST00000128896.8	novel	0.00	0	4	0	4	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	9	0	9	n	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	2	0	2	n	ENSMUSG00000046840.17	Hnf4aos	chr2	lncRNA	hepatic nuclear factor 4 alpha, opposite strand
novel_NIR_10877	chr2	163338855	163383423	-	163338551	163383423	A3SS	ENSMUST00000128896.8	novel	0.73	11	4	11	4	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.88	14	2	14	2	y	0.85	11	2	11	2	y	-	-	-	-	-	-	0.61	14	9	14	9	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	12	0	12	0	y	0.90	9	1	9	1	y	0.60	3	2	3	2	y	ENSMUSG00000046840.17	Hnf4aos	chr2	lncRNA	hepatic nuclear factor 4 alpha, opposite strand
novel_NIR_10878	chr2	163338855	163383423	-	163338858	163383423	A3SS	ENSMUST00000141329.8	novel	0.22	11	39	11	39	y	0.00	0	20	0	20	n	0.00	0	5	0	5	n	0.29	14	34	14	34	y	0.20	11	44	11	44	y	0.00	0	4	0	4	n	0.30	14	32	14	32	y	0.00	0	5	0	5	n	0.00	0	23	0	23	n	0.24	12	37	12	37	y	0.25	9	27	9	27	y	0.15	3	17	3	17	y	ENSMUSG00000046840.17	Hnf4aos	chr2	lncRNA	hepatic nuclear factor 4 alpha, opposite strand
novel_NIR_10879	chr2	163378060	163383423	-	163338551	163383423	A3SS	ENSMUST00000128896.8	novel	0.00	0	4	0	4	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	9	0	9	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	2	0	2	n	ENSMUSG00000046840.17	Hnf4aos	chr2	lncRNA	hepatic nuclear factor 4 alpha, opposite strand
novel_NIR_10880	chr2	163378060	163383423	-	163338858	163383423	A3SS	ENSMUST00000141329.8	novel	0.00	0	39	0	39	n	0.09	2	20	2	20	n	0.00	0	5	0	5	n	0.00	0	34	0	34	n	0.04	2	44	2	44	n	0.00	0	4	0	4	n	0.00	0	32	0	32	n	0.29	2	5	2	5	y	0.00	0	23	0	23	n	0.00	0	37	0	37	n	0.07	2	27	2	27	n	0.00	0	17	0	17	n	ENSMUSG00000046840.17	Hnf4aos	chr2	lncRNA	hepatic nuclear factor 4 alpha, opposite strand
novel_NIR_10881	chr2	163383121	163383423	-	163338551	163383423	A3SS	ENSMUST00000128896.8	novel	0.00	0	4	0	4	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.60	3	2	3	2	y	ENSMUSG00000046840.17	Hnf4aos	chr2	lncRNA	hepatic nuclear factor 4 alpha, opposite strand
novel_NIR_10882	chr2	163383121	163383423	-	163338858	163383423	A3SS	ENSMUST00000141329.8	novel	0.00	0	39	0	39	n	0.05	1	20	1	20	n	0.00	0	5	0	5	n	0.00	0	34	0	34	n	0.00	0	44	0	44	n	0.20	1	4	1	4	n	0.00	0	32	0	32	n	0.00	0	5	0	5	n	0.00	0	23	0	23	n	0.00	0	37	0	37	n	0.00	0	27	0	27	n	0.15	3	17	3	17	y	ENSMUSG00000046840.17	Hnf4aos	chr2	lncRNA	hepatic nuclear factor 4 alpha, opposite strand
novel_NIR_10883	chr2	163389320	163393497	+	163348907	163393497	A5SS	ENSMUST00000143911.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000017950.17	Hnf4a	chr2	protein_coding	hepatic nuclear factor 4, alpha
novel_NIR_10884	chr2	163389320	163393497	+	163388862	163393497	A5SS	ENSMUST00000131658.2	novel	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	ENSMUSG00000017950.17	Hnf4a	chr2	protein_coding	hepatic nuclear factor 4, alpha
novel_NIR_10885	chr2	163389320	163393497	+	163392162	163393497	5pMXE	ENSMUST00000137449.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000017950.17	Hnf4a	chr2	protein_coding	hepatic nuclear factor 4, alpha
novel_NIR_10886	chr2	163392057	163393497	+	163348907	163393497	A5SS	ENSMUST00000143911.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000017950.17	Hnf4a	chr2	protein_coding	hepatic nuclear factor 4, alpha
novel_NIR_10887	chr2	163392057	163393497	+	163388862	163393497	A5SS	ENSMUST00000131658.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.75	3	1	3	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	ENSMUSG00000017950.17	Hnf4a	chr2	protein_coding	hepatic nuclear factor 4, alpha
novel_NIR_10888	chr2	163392057	163393497	+	163392162	163393497	A5SS	ENSMUST00000137449.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000017950.17	Hnf4a	chr2	protein_coding	hepatic nuclear factor 4, alpha
novel_NIR_10889	chr2	163410929	163411869	+	163410959	163411869	A5SS	ENSMUST00000109411.8	novel	0.42	218	306	218	306	y	0.38	190	316	190	316	y	0.50	420	428	420	428	y	0.39	247	391	247	391	y	0.41	477	683	477	683	y	0.47	272	306	272	306	y	0.40	299	442	299	442	y	0.39	215	336	215	336	y	0.38	214	354	214	354	y	0.37	309	519	309	519	y	0.40	211	316	211	316	y	0.37	289	485	289	485	y	ENSMUSG00000017950.17	Hnf4a	chr2	protein_coding	hepatic nuclear factor 4, alpha
novel_NIR_10890	chr2	163444334	163453679	+	163444334	163448948	3pMXE	ENSMUST00000152135.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.60	3	2	3	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000017679.17	Ttpal	chr2	protein_coding	tocopherol (alpha) transfer protein-like
novel_NIR_10891	chr2	163449594	163452803	+	163449594	163455655	A3SS	ENSMUST00000109405.10	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	4	0	4	0	y	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000017679.17	Ttpal	chr2	protein_coding	tocopherol (alpha) transfer protein-like
novel_NIR_10892	chr2	163453770	163455655	+	163449594	163455655	A5SS	ENSMUST00000109405.10	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000017679.17	Ttpal	chr2	protein_coding	tocopherol (alpha) transfer protein-like
novel_NIR_10893	chr2	163453854	163455655	+	163449594	163455655	A5SS	ENSMUST00000109405.10	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.80	4	1	4	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000017679.17	Ttpal	chr2	protein_coding	tocopherol (alpha) transfer protein-like
novel_NIR_10894	chr2	163453854	163455655	+	163453872	163455655	A5SS	ENSMUST00000171696.8	novel	0.00	0	29	0	29	n	0.00	0	22	0	22	n	0.00	0	63	0	63	n	0.20	4	16	4	16	y	0.00	0	46	0	46	n	0.00	0	36	0	36	n	0.00	0	33	0	33	n	0.00	0	24	0	24	n	0.00	0	12	0	12	n	0.06	1	16	1	16	n	0.00	0	23	0	23	n	0.00	0	32	0	32	n	ENSMUSG00000017679.17	Ttpal	chr2	protein_coding	tocopherol (alpha) transfer protein-like
novel_NIR_10895	chr2	163481230	163486918	-	163485218	163486918	A3SS&ES	ENSMUST00000129854.2	novel	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.22	5	18	5	18	y	0.00	0	8	0	8	n	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	ENSMUSG00000017707.10	Serinc3	chr2	protein_coding	serine incorporator 3
novel_NIR_10896	chr2	163481309	163486918	-	163485218	163486918	A3SS&ES	ENSMUST00000129854.2	novel	0.00	0	11	0	11	n	0.20	1	4	1	4	n	0.18	4	18	4	18	y	0.00	0	8	0	8	n	0.06	1	17	1	17	n	0.00	0	9	0	9	n	0.08	1	12	1	12	n	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	ENSMUSG00000017707.10	Serinc3	chr2	protein_coding	serine incorporator 3
novel_NIR_10897	chr2	163483228	163486918	-	163485218	163486918	A3SS&ES	ENSMUST00000129854.2	novel	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	18	0	18	n	0.00	0	8	0	8	n	0.15	3	17	3	17	y	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	ENSMUSG00000017707.10	Serinc3	chr2	protein_coding	serine incorporator 3
novel_NIR_10898	chr2	163501155	163563048	+	163500412	163563048	A5SS	ENSMUST00000164399.8	novel	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.20	1	4	1	4	n	0.67	4	2	4	2	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	ENSMUSG00000035268.15	Pkig	chr2	protein_coding	protein kinase inhibitor, gamma
novel_NIR_10899	chr2	163501155	163563048	+	163500579	163563048	A5SS	ENSMUST00000131228.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035268.15	Pkig	chr2	protein_coding	protein kinase inhibitor, gamma
novel_NIR_10900	chr2	163536076	163563048	+	163500412	163563048	A5SS	ENSMUST00000164399.8	novel	0.20	1	4	1	4	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	1.00	1	0	1	0	n	0.25	3	9	3	9	y	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	ENSMUSG00000035268.15	Pkig	chr2	protein_coding	protein kinase inhibitor, gamma
novel_NIR_10901	chr2	163536076	163563048	+	163500579	163563048	A5SS	ENSMUST00000131228.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.75	3	1	3	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035268.15	Pkig	chr2	protein_coding	protein kinase inhibitor, gamma
novel_NIR_10902	chr2	163568971	163569464	-	163568968	163569464	A3SS	ENSMUST00000017841.4	novel	0.14	1	6	1	6	n	0.20	1	4	1	4	n	0.18	3	14	3	14	y	0.50	2	2	2	2	y	0.18	2	9	2	9	y	0.00	0	11	0	11	n	0.12	1	7	1	7	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.33	2	4	2	4	y	ENSMUSG00000017697.4	Ada	chr2	protein_coding	adenosine deaminase
novel_NIR_10903	chr2	163837668	163853522	+	163837791	163853522	A5SS	ENSMUST00000131288.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000018326.10	Ywhab	chr2	protein_coding	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide
novel_NIR_10904	chr2	163912622	163912833	-	163908589	163912833	A3SS	ENSMUST00000109384.10	novel	0.00	0	9	0	9	n	0.08	1	11	1	11	n	0.00	0	8	0	8	n	0.00	0	21	0	21	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.33	5	10	5	10	y	0.00	0	8	0	8	n	0.25	1	3	1	3	n	ENSMUSG00000018322.11	Tomm34	chr2	protein_coding	translocase of outer mitochondrial membrane 34
novel_NIR_10905	chr2	164273233	164273643	-	164273233	164285719	A5SS	ENSMUST00000142909.2	novel	0.00	0	32	0	32	n	0.00	0	15	0	15	n	0.00	0	1	0	1	n	0.00	0	16	0	16	n	0.00	0	22	0	22	n	0.12	1	7	1	7	n	0.00	0	38	0	38	n	0.29	2	5	2	5	y	0.00	0	27	0	27	n	0.00	0	26	0	26	n	0.03	1	28	1	28	n	0.00	0	27	0	27	n	ENSMUSG00000017009.4	Sdc4	chr2	protein_coding	syndecan 4
novel_NIR_10906	chr2	164273233	164274501	-	164273233	164285719	A5SS	ENSMUST00000142909.2	novel	0.00	0	32	0	32	n	0.12	2	15	2	15	n	0.75	3	1	3	1	y	0.00	0	16	0	16	n	0.08	2	22	2	22	n	0.00	0	7	0	7	n	0.00	0	38	0	38	n	0.00	0	5	0	5	n	0.04	1	27	1	27	n	0.00	0	26	0	26	n	0.00	0	28	0	28	n	0.00	0	27	0	27	n	ENSMUSG00000017009.4	Sdc4	chr2	protein_coding	syndecan 4
novel_NIR_10907	chr2	164273233	164285739	-	164273233	164285719	A5SS	ENSMUST00000142909.2	novel	0.11	4	32	4	32	n	0.00	0	15	0	15	n	0.50	1	1	1	1	n	0.16	3	16	3	16	y	0.04	1	22	1	22	n	0.00	0	7	0	7	n	0.00	0	38	0	38	n	0.00	0	5	0	5	n	0.00	0	27	0	27	n	0.00	0	26	0	26	n	0.10	3	28	3	28	n	0.07	2	27	2	27	n	ENSMUSG00000017009.4	Sdc4	chr2	protein_coding	syndecan 4
novel_NIR_10908	chr2	164300017	164300666	+	164300017	164302683	A3SS	ENSMUST00000109352.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	4	0	4	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000045503.17	Sys1	chr2	protein_coding	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)
novel_NIR_10909	chr2	164589479	164596039	+	164589479	164593152	3pMXE	ENSMUST00000109326.10	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000017299.14	Dnttip1	chr2	protein_coding	deoxynucleotidyltransferase, terminal, interacting protein 1
novel_NIR_10910	chr2	164634930	164636923	-	164634930	164637002	A5SS	ENSMUST00000017451.7	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.50	5	5	5	5	y	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000017307.17	Acot8	chr2	protein_coding	acyl-CoA thioesterase 8
novel_NIR_10911	chr2	164672893	164674619	-	164672907	164674619	A3SS	ENSMUST00000042775.5	novel	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.11	1	8	1	8	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.20	2	8	2	8	y	0.00	0	17	0	17	n	0.00	0	17	0	17	n	0.00	0	6	0	6	n	ENSMUSG00000039873.5	Neurl2	chr2	protein_coding	neuralized E3 ubiquitin protein ligase 2
novel_NIR_10912	chr2	164672907	164682034	-	164672907	164674619	5pMXE	ENSMUST00000042775.5	novel	0.00	0	6	0	6	n	0.09	1	10	1	10	n	0.00	0	15	0	15	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.16	3	16	3	16	y	0.00	0	7	0	7	n	0.11	1	8	1	8	n	0.06	1	17	1	17	n	0.00	0	17	0	17	n	0.00	0	6	0	6	n	ENSMUSG00000039873.5	Neurl2	chr2	protein_coding	neuralized E3 ubiquitin protein ligase 2
novel_NIR_10913	chr2	164675116	164676240	+	164675116	164675529	3pMXE	ENSMUST00000147883.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000017760.17	Ctsa	chr2	protein_coding	cathepsin A
novel_NIR_10914	chr2	164675116	164676240	+	164675116	164675612	3pMXE	ENSMUST00000133502.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000017760.17	Ctsa	chr2	protein_coding	cathepsin A
novel_NIR_10915	chr2	164675116	164676240	+	164675912	164676240	5pMXE	ENSMUST00000152721.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000017760.17	Ctsa	chr2	protein_coding	cathepsin A
novel_NIR_10916	chr2	164696975	164698158	-	164696975	164697248	A5SS&ES	ENSMUST00000148912.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000017754.14	Pltp	chr2	protein_coding	phospholipid transfer protein
novel_NIR_10917	chr2	164696975	164698386	-	164696975	164697248	A5SS&ES	ENSMUST00000148912.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000017754.14	Pltp	chr2	protein_coding	phospholipid transfer protein
novel_NIR_10918	chr2	164721581	164724695	+	164722018	164724695	5pMXE	ENSMUST00000122810.2	novel	0.29	2	5	2	5	y	0.50	2	2	2	2	y	0.60	3	2	3	2	y	0.25	1	3	1	3	n	0.29	2	5	2	5	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.12	1	7	1	7	n	0.25	3	9	3	9	y	ENSMUSG00000039849.7	Pcif1	chr2	protein_coding	phosphorylated CTD interacting factor 1
novel_NIR_10919	chr2	164752795	164753437	-	164752792	164753437	A3SS	ENSMUST00000041361.14	novel	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.33	5	10	5	10	y	0.18	2	9	2	9	y	0.00	0	9	0	9	n	0.14	1	6	1	6	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.25	3	9	3	9	y	0.14	1	6	1	6	n	0.20	1	4	1	4	n	ENSMUSG00000039834.18	Zfp335	chr2	protein_coding	zinc finger protein 335
novel_NIR_10920	chr2	164756140	164761144	+	164756155	164761144	A5SS	ENSMUST00000142338.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000085436.2	Zfp335os	chr2	lncRNA	zinc finger protein 335, opposite strand
novel_NIR_10921	chr2	164802923	164803982	+	164802923	164804320	A3SS	ENSMUST00000125867.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000017740.18	Slc12a5	chr2	protein_coding	solute carrier family 12, member 5
novel_NIR_10922	chr2	164802923	164803982	+	164802923	164815396	A3SS	ENSMUST00000124372.6	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000017740.18	Slc12a5	chr2	protein_coding	solute carrier family 12, member 5
novel_NIR_10923	chr2	164802923	164803982	+	164802923	164815607	A3SS	ENSMUST00000202623.4	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000017740.18	Slc12a5	chr2	protein_coding	solute carrier family 12, member 5
novel_NIR_10924	chr2	164816973	164817160	+	164816973	164817804	A3SS	ENSMUST00000202623.4	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000017740.18	Slc12a5	chr2	protein_coding	solute carrier family 12, member 5
novel_NIR_10925	chr2	165120336	165124001	-	165122874	165124001	3pMXE	ENSMUST00000131409.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000017664.17	Slc35c2	chr2	protein_coding	solute carrier family 35, member C2
novel_NIR_10926	chr2	165124977	165125169	-	165124782	165125169	A3SS	ENSMUST00000132270.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000017664.17	Slc35c2	chr2	protein_coding	solute carrier family 35, member C2
novel_NIR_10927	chr2	165149981	165150833	-	165146898	165150833	A3SS	ENSMUST00000103091.9	novel	0.07	1	14	1	14	n	0.14	1	6	1	6	n	0.05	1	18	1	18	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.08	1	12	1	12	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.19	4	17	4	17	y	0.15	2	11	2	11	y	0.05	1	18	1	18	n	ENSMUSG00000017670.17	Elmo2	chr2	protein_coding	engulfment and cell motility 2
novel_NIR_10928	chr2	165629163	165633825	-	165627658	165633825	A3SS	ENSMUST00000152682.8	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.29	2	5	2	5	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	5	0	5	n	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000039671.19	Zmynd8	chr2	protein_coding	zinc finger, MYND-type containing 8
novel_NIR_10929	chr2	165629163	165633825	-	165629167	165633825	A3SS	ENSMUST00000109266.11	novel	0.00	0	21	0	21	n	0.00	0	10	0	10	n	0.00	0	17	0	17	n	0.09	2	21	2	21	n	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.06	1	16	1	16	n	0.00	0	16	0	16	n	0.09	1	10	1	10	n	0.00	0	14	0	14	n	0.00	0	21	0	21	n	0.33	3	6	3	6	y	ENSMUSG00000039671.19	Zmynd8	chr2	protein_coding	zinc finger, MYND-type containing 8
novel_NIR_10930	chr2	165684797	165687664	-	165684797	165687941	A5SS	ENSMUST00000109266.11	novel	0.07	1	13	1	13	n	0.00	0	13	0	13	n	0.20	4	16	4	16	y	0.08	1	11	1	11	n	0.02	1	40	1	40	n	0.12	3	23	3	23	n	0.00	0	31	0	31	n	0.04	1	22	1	22	n	0.00	0	25	0	25	n	0.03	1	31	1	31	n	0.03	1	29	1	29	n	0.14	3	18	3	18	n	ENSMUSG00000039671.19	Zmynd8	chr2	protein_coding	zinc finger, MYND-type containing 8
novel_NIR_10931	chr2	165688155	165693920	-	165688159	165693920	A3SS	ENSMUST00000109266.11	novel	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	20	0	20	n	0.00	0	9	0	9	n	0.18	2	9	2	9	y	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	18	0	18	n	0.00	0	8	0	8	n	ENSMUSG00000039671.19	Zmynd8	chr2	protein_coding	zinc finger, MYND-type containing 8
novel_NIR_10932	chr2	165694068	165704106	-	165694068	165694788	A5SS&ES	ENSMUST00000109269.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039671.19	Zmynd8	chr2	protein_coding	zinc finger, MYND-type containing 8
novel_NIR_10933	chr2	165694068	165704106	-	165694068	165699975	5pMXE	ENSMUST00000109266.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000039671.19	Zmynd8	chr2	protein_coding	zinc finger, MYND-type containing 8
novel_NIR_10934	chr2	165694068	165704106	-	165694068	165703805	5pMXE	ENSMUST00000139907.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039671.19	Zmynd8	chr2	protein_coding	zinc finger, MYND-type containing 8
novel_NIR_10935	chr2	165704266	165717625	-	165694799	165717625	A3SS	ENSMUST00000109269.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000039671.19	Zmynd8	chr2	protein_coding	zinc finger, MYND-type containing 8
novel_NIR_10936	chr2	165704266	165717625	-	165715143	165717625	3pMXE	ENSMUST00000150564.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039671.19	Zmynd8	chr2	protein_coding	zinc finger, MYND-type containing 8
novel_NIR_10937	chr2	165717695	165720710	-	165717695	165718007	5pMXE	ENSMUST00000134557.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039671.19	Zmynd8	chr2	protein_coding	zinc finger, MYND-type containing 8
novel_NIR_10938	chr2	165717695	165720710	-	165717695	165718205	5pMXE	ENSMUST00000109269.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039671.19	Zmynd8	chr2	protein_coding	zinc finger, MYND-type containing 8
novel_NIR_10939	chr2	165717695	165720710	-	165717695	165721494	A5SS	ENSMUST00000146204.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000039671.19	Zmynd8	chr2	protein_coding	zinc finger, MYND-type containing 8
novel_NIR_10940	chr2	165717695	165720710	-	165717695	165724069	A5SS	ENSMUST00000099084.9	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039671.19	Zmynd8	chr2	protein_coding	zinc finger, MYND-type containing 8
novel_NIR_10941	chr2	165717695	165720710	-	165717695	165725248	A5SS	ENSMUST00000018050.14	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039671.19	Zmynd8	chr2	protein_coding	zinc finger, MYND-type containing 8
novel_NIR_10942	chr2	165717695	165720710	-	165717695	165726099	A5SS	ENSMUST00000150564.2	novel	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000039671.19	Zmynd8	chr2	protein_coding	zinc finger, MYND-type containing 8
novel_NIR_10943	chr2	165717695	165720710	-	165717695	165726528	A5SS	ENSMUST00000177633.8	novel	0.33	2	4	2	4	y	0.00	0	1	0	1	n	0.14	1	6	1	6	n	0.00	0	9	0	9	n	0.10	1	9	1	9	n	0.00	0	6	0	6	n	0.12	1	7	1	7	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000039671.19	Zmynd8	chr2	protein_coding	zinc finger, MYND-type containing 8
novel_NIR_10944	chr2	165717695	165720710	-	165717695	165738773	A5SS	ENSMUST00000109262.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039671.19	Zmynd8	chr2	protein_coding	zinc finger, MYND-type containing 8
novel_NIR_10945	chr2	165717695	165720710	-	165717695	165740836	A5SS	ENSMUST00000136842.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039671.19	Zmynd8	chr2	protein_coding	zinc finger, MYND-type containing 8
novel_NIR_10946	chr2	165823067	165824697	-	165823067	165827514	A5SS	ENSMUST00000130022.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000084816.2	Platr29	chr2	lncRNA	pluripotency associated transcript 29
novel_NIR_10947	chr2	165823067	165824744	-	165823067	165827514	A5SS	ENSMUST00000130022.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000084816.2	Platr29	chr2	lncRNA	pluripotency associated transcript 29
novel_NIR_10948	chr2	165823067	165824820	-	165823067	165827514	A5SS	ENSMUST00000130022.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000084816.2	Platr29	chr2	lncRNA	pluripotency associated transcript 29
novel_NIR_10949	chr2	165889875	165890429	+	165889875	165890375	A3SS	ENSMUST00000109252.8	novel	0.00	0	7	0	7	n	0.67	2	1	2	1	y	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.14	1	6	1	6	n	0.00	0	7	0	7	n	0.00	0	19	0	19	n	0.00	0	7	0	7	n	0.11	1	8	1	8	n	ENSMUSG00000027678.18	Ncoa3	chr2	protein_coding	nuclear receptor coactivator 3
novel_NIR_10950	chr2	165901741	165902689	+	165901741	165902677	A3SS	ENSMUST00000109252.8	novel	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	23	0	23	n	0.00	0	23	0	23	n	0.00	0	22	0	22	n	0.00	0	10	0	10	n	0.00	0	28	0	28	n	0.00	0	14	0	14	n	0.21	3	11	3	11	y	0.06	2	29	2	29	n	0.00	0	19	0	19	n	0.00	0	16	0	16	n	ENSMUSG00000027678.18	Ncoa3	chr2	protein_coding	nuclear receptor coactivator 3
novel_NIR_10951	chr2	166684673	166687373	+	166684673	166687370	A3SS	ENSMUST00000099078.10	novel	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.00	0	18	0	18	n	0.00	0	17	0	17	n	0.02	1	48	1	48	n	0.00	0	19	0	19	n	0.00	0	27	0	27	n	0.14	3	19	3	19	n	0.20	3	12	3	12	y	0.00	0	25	0	25	n	0.00	0	10	0	10	n	0.00	0	23	0	23	n	ENSMUSG00000074582.11	Arfgef2	chr2	protein_coding	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)
novel_NIR_10952	chr2	166705605	166706665	+	166705605	166706613	A3SS	ENSMUST00000099078.10	novel	0.00	0	23	0	23	n	0.00	0	17	0	17	n	0.00	0	43	0	43	n	0.03	1	38	1	38	n	0.00	0	56	0	56	n	0.00	0	30	0	30	n	0.00	0	39	0	39	n	0.16	4	21	4	21	y	0.00	0	16	0	16	n	0.09	4	39	4	39	n	0.00	0	34	0	34	n	0.00	0	32	0	32	n	ENSMUSG00000074582.11	Arfgef2	chr2	protein_coding	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)
novel_NIR_10953	chr2	166791279	166791628	-	166791279	166791620	A5SS	ENSMUST00000049412.12	novel	0.62	5	3	5	3	y	0.60	3	2	3	2	y	-	-	-	-	-	-	0.14	1	6	1	6	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.75	3	1	3	1	y	ENSMUSG00000039536.17	Stau1	chr2	protein_coding	staufen double-stranded RNA binding protein 1
novel_NIR_10954	chr2	166791279	166791632	-	166791279	166791620	A5SS	ENSMUST00000049412.12	novel	0.00	0	3	0	3	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000039536.17	Stau1	chr2	protein_coding	staufen double-stranded RNA binding protein 1
novel_NIR_10955	chr2	166895038	166897074	-	166892365	166897074	A3SS	ENSMUST00000048988.14	novel	0.29	4	10	4	10	y	0.00	0	6	0	6	n	0.00	0	42	0	42	n	0.00	0	31	0	31	n	0.00	0	39	0	39	n	0.00	0	23	0	23	n	0.00	0	23	0	23	n	0.00	0	17	0	17	n	0.00	0	24	0	24	n	0.10	3	26	3	26	n	0.00	0	8	0	8	n	0.00	0	29	0	29	n	ENSMUSG00000039501.15	Znfx1	chr2	protein_coding	zinc finger, NFX1-type containing 1
novel_NIR_10956	chr2	167155141	167170272	-	167155141	167155723	5pMXE	ENSMUST00000155623.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	y	ENSMUSG00000017929.14	B4galt5	chr2	protein_coding	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5
novel_NIR_10957	chr2	167155141	167170272	-	167155141	167155768	5pMXE	ENSMUST00000133557.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	y	ENSMUSG00000017929.14	B4galt5	chr2	protein_coding	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5
novel_NIR_10958	chr2	167155141	167170272	-	167155141	167190838	A5SS	ENSMUST00000109221.9	novel	0.03	1	28	1	28	n	0.00	0	13	0	13	n	0.00	0	20	0	20	n	0.03	1	29	1	29	n	0.00	0	25	0	25	n	0.00	0	3	0	3	n	0.00	0	19	0	19	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.05	1	19	1	19	n	0.00	0	15	0	15	n	0.16	5	27	5	27	y	ENSMUSG00000017929.14	B4galt5	chr2	protein_coding	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5
novel_NIR_10959	chr2	167287527	167288375	+	167287527	167293127	A3SS	ENSMUST00000141400.8	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	0.40	2	3	2	3	y	1.00	1	0	1	0	n	0.60	3	2	3	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000039463.15	Slc9a8	chr2	protein_coding	solute carrier family 9 (sodium/hydrogen exchanger), member 8
novel_NIR_10960	chr2	167327513	167334683	-	167327513	167328352	A5SS&ES	ENSMUST00000126389.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	1.00	7	0	7	0	y	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000047030.16	Spata2	chr2	protein_coding	spermatogenesis associated 2
novel_NIR_10961	chr2	167327513	167334683	-	167327513	167331089	A5SS&ES	ENSMUST00000155875.8	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.47	7	8	7	8	y	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.25	2	6	2	6	y	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000047030.16	Spata2	chr2	protein_coding	spermatogenesis associated 2
novel_NIR_10962	chr2	167327513	167334683	-	167327513	167334679	A5SS	ENSMUST00000057627.16	novel	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.20	2	8	2	8	y	0.00	0	10	0	10	n	0.23	7	24	7	24	y	0.10	1	9	1	9	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.40	2	3	2	3	y	0.11	1	8	1	8	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	ENSMUSG00000047030.16	Spata2	chr2	protein_coding	spermatogenesis associated 2
novel_NIR_10963	chr2	167331182	167334679	-	167328412	167334679	A3SS	ENSMUST00000126389.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000047030.16	Spata2	chr2	protein_coding	spermatogenesis associated 2
novel_NIR_10964	chr2	167331182	167334679	-	167331288	167334679	A3SS	ENSMUST00000155875.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000047030.16	Spata2	chr2	protein_coding	spermatogenesis associated 2
novel_NIR_10965	chr2	167345521	167348944	+	167345521	167352796	A3SS	ENSMUST00000127939.2	novel	0.00	0	5	0	5	n	1.00	2	0	2	0	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.20	1	4	1	4	n	0.00	0	5	0	5	n	ENSMUSG00000006418.18	Rnf114	chr2	protein_coding	ring finger protein 114
novel_NIR_10966	chr2	167345521	167348989	+	167345521	167352796	A3SS	ENSMUST00000127939.2	novel	0.17	1	5	1	5	n	1.00	1	0	1	0	n	0.20	1	4	1	4	n	0.33	1	2	1	2	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.25	2	6	2	6	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.17	1	5	1	5	n	ENSMUSG00000006418.18	Rnf114	chr2	protein_coding	ring finger protein 114
novel_NIR_10967	chr2	167350708	167352796	+	167345521	167352796	A5SS	ENSMUST00000127939.2	novel	0.00	0	5	0	5	n	1.00	1	0	1	0	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.20	2	8	2	8	y	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	ENSMUSG00000006418.18	Rnf114	chr2	protein_coding	ring finger protein 114
novel_NIR_10968	chr2	167459897	167460621	-	167459897	167470989	A5SS	ENSMUST00000130284.2	novel	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.25	2	6	2	6	y	0.00	0	3	0	3	n	0.50	3	3	3	3	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.43	3	4	3	4	y	0.00	0	5	0	5	n	0.25	1	3	1	3	n	ENSMUSG00000078923.11	Ube2v1	chr2	protein_coding	ubiquitin-conjugating enzyme E2 variant 1
novel_NIR_10969	chr2	167459897	167460621	-	167459897	167471087	A5SS	ENSMUST00000140216.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.60	3	2	3	2	y	0.00	0	2	0	2	n	0.50	1	1	1	1	n	ENSMUSG00000078923.11	Ube2v1	chr2	protein_coding	ubiquitin-conjugating enzyme E2 variant 1
novel_NIR_10970	chr2	167459897	167460621	-	167459897	167486684	A5SS	ENSMUST00000125544.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000089739.3	Gm20431	chr2	protein_coding	predicted gene 20431
novel_NIR_10971	chr2	167534156	167537247	+	167533180	167537247	A5SS	ENSMUST00000130679.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000006462.7	A530013C23Rik	chr2	lncRNA	RIKEN cDNA A530013C23 gene
novel_NIR_10972	chr2	167622715	167623537	+	167620933	167623537	A5SS	ENSMUST00000127441.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000084797.2	Gm14321	chr2	lncRNA	predicted gene 14321
novel_NIR_10973	chr2	167622715	167623537	+	167622715	167624412	A3SS	ENSMUST00000139927.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000084797.2	Gm14321	chr2	lncRNA	predicted gene 14321
novel_NIR_10974	chr2	167623759	167624412	+	167622715	167624412	A5SS	ENSMUST00000139927.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000084797.2	Gm14321	chr2	lncRNA	predicted gene 14321
novel_NIR_10975	chr2	167623759	167624412	+	167623759	167623872	3pMXE	ENSMUST00000127441.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000084797.2	Gm14321	chr2	lncRNA	predicted gene 14321
novel_NIR_10976	chr2	167671351	167675328	-	167671351	167674851	A5SS	ENSMUST00000143649.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.25	12	36	12	36	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.33	10	20	10	20	y	0.40	2	3	2	3	y	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000087684.2	1200007C13Rik	chr2	lncRNA	RIKEN cDNA 1200007C13 gene
novel_NIR_10977	chr2	167807030	167809387	+	167807030	167809617	A3SS	ENSMUST00000151705.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027540.14	Ptpn1	chr2	protein_coding	protein tyrosine phosphatase, non-receptor type 1
novel_NIR_10978	chr2	167831725	167833071	-	167831725	167833095	A5SS	ENSMUST00000099073.3	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.29	2	5	2	5	y	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000074577.10	Ripor3	chr2	protein_coding	RIPOR family member 3
novel_NIR_10979	chr2	167848205	167862945	-	167848205	167852442	5pMXE	ENSMUST00000123782.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000074577.10	Ripor3	chr2	protein_coding	RIPOR family member 3
novel_NIR_10980	chr2	168031314	168039883	-	168031314	168046520	A5SS	ENSMUST00000057793.11	novel	0.86	6	1	6	1	y	0.20	1	4	1	4	n	0.18	3	14	3	14	y	0.25	2	6	2	6	y	0.00	0	5	0	5	n	0.33	2	4	2	4	y	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.17	1	5	1	5	n	0.08	1	11	1	11	n	1.00	1	0	1	0	n	0.00	0	6	0	6	n	ENSMUSG00000051149.16	Adnp	chr2	protein_coding	activity-dependent neuroprotective protein
novel_NIR_10981	chr2	168031314	168039883	-	168031314	168048494	A5SS	ENSMUST00000088001.6	novel	0.43	6	8	6	8	y	1.00	1	0	1	0	n	0.30	3	7	3	7	y	0.25	2	6	2	6	y	0.00	0	11	0	11	n	0.33	2	4	2	4	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.11	1	8	1	8	n	0.07	1	14	1	14	n	0.33	1	2	1	2	n	0.00	0	6	0	6	n	ENSMUSG00000051149.16	Adnp	chr2	protein_coding	activity-dependent neuroprotective protein
novel_NIR_10982	chr2	168031314	168039883	-	168031314	168052351	A5SS	ENSMUST00000138667.2	novel	0.67	6	3	6	3	y	0.50	1	1	1	1	n	0.60	3	2	3	2	y	0.29	2	5	2	5	y	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.20	1	4	1	4	n	0.25	1	3	1	3	n	-	-	-	-	-	-	ENSMUSG00000093752.2	Gm20716	chr2	protein_coding	predicted gene 20716
novel_NIR_10983	chr2	168061225	168061957	-	168059696	168061957	A3SS	ENSMUST00000099072.11	novel	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	ENSMUSG00000078919.11	Dpm1	chr2	protein_coding	dolichol-phosphate (beta-D) mannosyltransferase 1
novel_NIR_10984	chr2	169475699	169486621	+	169475699	169725446	A3SS	ENSMUST00000109159.3	novel	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.40	2	3	2	3	y	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	ENSMUSG00000047907.12	Tshz2	chr2	protein_coding	teashirt zinc finger family member 2
novel_NIR_10985	chr2	169475699	169492078	+	169475699	169725446	A3SS	ENSMUST00000109159.3	novel	1.00	2	0	2	0	y	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	ENSMUSG00000047907.12	Tshz2	chr2	protein_coding	teashirt zinc finger family member 2
novel_NIR_10986	chr2	169962673	169972781	-	169962673	169972968	A5SS	ENSMUST00000063710.13	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.17	1	5	1	5	n	0.60	6	4	6	4	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	ENSMUSG00000052056.15	Zfp217	chr2	protein_coding	zinc finger protein 217
novel_NIR_10987	chr2	169962673	169972781	-	169962673	169973577	A5SS	ENSMUST00000109155.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.14	1	6	1	6	n	0.00	0	4	0	4	n	1.00	1	0	1	0	n	0.67	6	3	6	3	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	ENSMUSG00000052056.15	Zfp217	chr2	protein_coding	zinc finger protein 217
novel_NIR_10988	chr2	169973672	169976382	-	169973672	169975815	5pMXE	ENSMUST00000125162.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000052056.15	Zfp217	chr2	protein_coding	zinc finger protein 217
novel_NIR_10989	chr2	169973672	169976382	-	169973672	169984534	A5SS	ENSMUST00000109155.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000052056.15	Zfp217	chr2	protein_coding	zinc finger protein 217
novel_NIR_10990	chr2	169973672	169976382	-	169973672	169989782	A5SS	ENSMUST00000149318.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000052056.15	Zfp217	chr2	protein_coding	zinc finger protein 217
novel_NIR_10991	chr2	172212733	172214849	+	172212776	172214849	A5SS	ENSMUST00000151511.8	novel	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.09	1	10	1	10	n	0.00	0	15	0	15	n	0.00	0	15	0	15	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.33	3	6	3	6	y	0.00	0	11	0	11	n	0.00	0	12	0	12	n	ENSMUSG00000027498.15	Cstf1	chr2	protein_coding	cleavage stimulation factor, 3' pre-RNA, subunit 1
novel_NIR_10992	chr2	172212733	172214849	+	172212947	172214849	A5SS	ENSMUST00000116375.2	novel	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.08	1	12	1	12	n	0.00	0	9	0	9	n	0.00	0	27	0	27	n	0.00	0	14	0	14	n	0.00	0	21	0	21	n	0.00	0	15	0	15	n	0.00	0	17	0	17	n	0.18	3	14	3	14	y	0.00	0	8	0	8	n	0.00	0	11	0	11	n	ENSMUSG00000027498.15	Cstf1	chr2	protein_coding	cleavage stimulation factor, 3' pre-RNA, subunit 1
novel_NIR_10993	chr2	172304608	172305097	+	172295237	172305097	A5SS	ENSMUST00000140048.2	novel	1.00	1	0	1	0	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.22	2	7	2	7	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000027502.12	Rtf2	chr2	protein_coding	replication termination factor 2
novel_NIR_10994	chr2	172936605	172937122	-	172936575	172937122	A3SS	ENSMUST00000094287.10	novel	1.00	2	0	2	0	y	1.00	6	0	6	0	y	1.00	8	0	8	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	7	0	7	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	ENSMUSG00000070495.12	Ctcfl	chr2	protein_coding	CCCTC-binding factor (zinc finger protein)-like
novel_NIR_10995	chr2	172947985	172949254	-	172947985	172949502	A5SS	ENSMUST00000094287.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000070495.12	Ctcfl	chr2	protein_coding	CCCTC-binding factor (zinc finger protein)-like
novel_NIR_10996	chr2	172950096	172950496	-	172950096	172954037	A5SS	ENSMUST00000094287.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000070495.12	Ctcfl	chr2	protein_coding	CCCTC-binding factor (zinc finger protein)-like
novel_NIR_10997	chr2	172952798	172960507	+	172952798	172971020	A3SS	ENSMUST00000142207.8	novel	0.18	4	18	4	18	y	0.17	4	20	4	20	y	0.03	3	97	3	97	n	0.07	4	53	4	53	n	0.09	3	32	3	32	n	0.01	1	67	1	67	n	0.00	0	59	0	59	n	0.03	2	56	2	56	n	0.00	0	31	0	31	n	0.00	0	55	0	55	n	0.10	3	26	3	26	n	0.04	1	23	1	23	n	ENSMUSG00000087382.8	Ctcflos	chr2	lncRNA	CCCTC-binding factor (zinc finger protein)-like, opposite strand
novel_NIR_10998	chr2	172961776	172965649	+	172961776	172965737	A3SS	ENSMUST00000142165.2	novel	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.14	1	6	1	6	n	0.17	1	5	1	5	n	0.25	1	3	1	3	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	ENSMUSG00000087382.8	Ctcflos	chr2	lncRNA	CCCTC-binding factor (zinc finger protein)-like, opposite strand
novel_NIR_10999	chr2	172971870	172972834	+	172971870	172973499	A3SS	ENSMUST00000142207.8	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	9	0	9	0	y	1.00	1	0	1	0	n	1.00	6	0	6	0	y	0.88	7	1	7	1	n	0.17	1	5	1	5	n	0.83	5	1	5	1	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	ENSMUSG00000087382.8	Ctcflos	chr2	lncRNA	CCCTC-binding factor (zinc finger protein)-like, opposite strand
novel_NIR_11000	chr2	172971870	172973475	+	172971870	172973499	A3SS	ENSMUST00000142207.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.29	2	5	2	5	y	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	ENSMUSG00000087382.8	Ctcflos	chr2	lncRNA	CCCTC-binding factor (zinc finger protein)-like, opposite strand
novel_NIR_11001	chr2	172971870	172979793	+	172971870	172973499	3pMXE	ENSMUST00000142207.8	novel	1.00	22	0	22	0	y	1.00	24	0	24	0	y	1.00	46	0	46	0	y	1.00	31	0	31	0	y	1.00	25	0	25	0	y	0.98	41	1	41	1	y	0.88	35	5	35	5	y	0.95	18	1	18	1	y	0.88	7	1	7	1	y	0.88	22	3	22	3	y	0.86	12	2	12	2	y	0.92	12	1	12	1	y	ENSMUSG00000087382.8	Ctcflos	chr2	lncRNA	CCCTC-binding factor (zinc finger protein)-like, opposite strand
novel_NIR_11002	chr2	173423089	173428790	-	173423089;173423906	173423765;173428790	ES	ENSMUST00000141051.8	novel	0.00	0	2.0	0	3;1	n	0.50	1	1.0	1	0;2	n	0.50	1	1.0	1	1;1	n	0.00	0	2.0	0	2;2	n	0.00	0	2.5	0	3;2	n	0.67	1	0.5	1	1;0	n	0.00	0	0.5	0	1;0	n	0.00	0	2.5	0	4;1	n	0.33	1	2.0	1	3;1	n	0.43	5	6.5	5	9;4	y	0.00	0	1.5	0	0;3	n	0.00	0	3.0	0	2;4	n	ENSMUSG00000055897.14	Ppp4r1l-ps	chr2	transcribed_unprocessed_pseudogene	protein phosphatase 4, regulatory subunit 1-like, pseudogene
novel_NIR_11003	chr2	173423906	173427157	-	173423906	173426212	A5SS&ES	ENSMUST00000132669.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000055897.14	Ppp4r1l-ps	chr2	transcribed_unprocessed_pseudogene	protein phosphatase 4, regulatory subunit 1-like, pseudogene
novel_NIR_11004	chr2	173423906	173427157	-	173423906	173428790	A5SS	ENSMUST00000141051.8	novel	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.33	2	4	2	4	y	ENSMUSG00000055897.14	Ppp4r1l-ps	chr2	transcribed_unprocessed_pseudogene	protein phosphatase 4, regulatory subunit 1-like, pseudogene
novel_NIR_11005	chr2	173431774	173433910	-	173431741	173433910	A3SS	ENSMUST00000141051.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000055897.14	Ppp4r1l-ps	chr2	transcribed_unprocessed_pseudogene	protein phosphatase 4, regulatory subunit 1-like, pseudogene
novel_NIR_11006	chr2	173431774	173433910	-	173432589	173433910	A3SS	ENSMUST00000151763.8	novel	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.15	2	11	2	11	y	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	14	0	14	n	0.00	0	4	0	4	n	ENSMUSG00000055897.14	Ppp4r1l-ps	chr2	transcribed_unprocessed_pseudogene	protein phosphatase 4, regulatory subunit 1-like, pseudogene
novel_NIR_11007	chr2	173438337	173438833	-	173434807	173438833	A3SS	ENSMUST00000141051.8	novel	0.00	0	1	0	1	n	0.50	1	1	1	1	n	1.00	4	0	4	0	y	0.75	3	1	3	1	y	0.00	0	4	0	4	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.33	1	2	1	2	n	1.00	1	0	1	0	n	0.25	1	3	1	3	n	ENSMUSG00000055897.14	Ppp4r1l-ps	chr2	transcribed_unprocessed_pseudogene	protein phosphatase 4, regulatory subunit 1-like, pseudogene
novel_NIR_11008	chr2	173438337	173438833	-	173438192	173438833	A3SS	ENSMUST00000148111.2	novel	0.00	0	9	0	9	n	0.17	1	5	1	5	n	0.40	4	6	4	6	y	0.50	3	3	3	3	y	0.00	0	7	0	7	n	0.17	1	5	1	5	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.25	1	3	1	3	n	0.33	1	2	1	2	n	ENSMUSG00000055897.14	Ppp4r1l-ps	chr2	transcribed_unprocessed_pseudogene	protein phosphatase 4, regulatory subunit 1-like, pseudogene
novel_NIR_11009	chr2	173438337	173438833	-	173438320	173438833	A3SS	ENSMUST00000132669.8	novel	0.00	0	3	0	3	n	0.14	1	6	1	6	n	0.40	4	6	4	6	y	0.38	3	5	3	5	y	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.08	1	12	1	12	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.07	1	14	1	14	n	0.09	1	10	1	10	n	0.20	1	4	1	4	n	ENSMUSG00000055897.14	Ppp4r1l-ps	chr2	transcribed_unprocessed_pseudogene	protein phosphatase 4, regulatory subunit 1-like, pseudogene
novel_NIR_11010	chr2	173446390	173450526	-	173438980	173450526	A3SS	ENSMUST00000148111.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.20	1	4	1	4	n	-	-	-	-	-	-	0.00	0	10	0	10	n	ENSMUSG00000055897.14	Ppp4r1l-ps	chr2	transcribed_unprocessed_pseudogene	protein phosphatase 4, regulatory subunit 1-like, pseudogene
novel_NIR_11011	chr2	173446390	173450526	-	173442835	173450526	A3SS	ENSMUST00000127022.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000055897.14	Ppp4r1l-ps	chr2	transcribed_unprocessed_pseudogene	protein phosphatase 4, regulatory subunit 1-like, pseudogene
novel_NIR_11012	chr2	173450672	173456583	-	173450672	173487250	A5SS	ENSMUST00000148111.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000055897.14	Ppp4r1l-ps	chr2	transcribed_unprocessed_pseudogene	protein phosphatase 4, regulatory subunit 1-like, pseudogene
novel_NIR_11013	chr2	173450672	173456583	-	173450672	173501116	A5SS	ENSMUST00000148213.2	novel	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.33	2	4	2	4	y	0.00	0	1	0	1	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.22	2	7	2	7	y	0.00	0	1	0	1	n	0.17	1	5	1	5	n	ENSMUSG00000055897.14	Ppp4r1l-ps	chr2	transcribed_unprocessed_pseudogene	protein phosphatase 4, regulatory subunit 1-like, pseudogene
novel_NIR_11014	chr2	173450672	173490963	-	173438980	173490963	A3SS	ENSMUST00000140992.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000055897.14	Ppp4r1l-ps	chr2	transcribed_unprocessed_pseudogene	protein phosphatase 4, regulatory subunit 1-like, pseudogene
novel_NIR_11015	chr2	173450672	173490963	-	173450672	173487250	A5SS&ES	ENSMUST00000148111.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000055897.14	Ppp4r1l-ps	chr2	transcribed_unprocessed_pseudogene	protein phosphatase 4, regulatory subunit 1-like, pseudogene
novel_NIR_11016	chr2	173450672	173490963	-	173450672	173501116	A5SS	ENSMUST00000148213.2	novel	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.22	2	7	2	7	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	ENSMUSG00000055897.14	Ppp4r1l-ps	chr2	transcribed_unprocessed_pseudogene	protein phosphatase 4, regulatory subunit 1-like, pseudogene
novel_NIR_11017	chr2	173457369	173487250	-	173450672	173487250	A3SS	ENSMUST00000148111.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.86	6	1	6	1	y	ENSMUSG00000055897.14	Ppp4r1l-ps	chr2	transcribed_unprocessed_pseudogene	protein phosphatase 4, regulatory subunit 1-like, pseudogene
novel_NIR_11018	chr2	173457369	173487250	-	173457369	173501116	A5SS	ENSMUST00000151763.8	novel	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.15	2	11	2	11	y	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.09	1	10	1	10	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.50	6	6	6	6	y	ENSMUSG00000055897.14	Ppp4r1l-ps	chr2	transcribed_unprocessed_pseudogene	protein phosphatase 4, regulatory subunit 1-like, pseudogene
novel_NIR_11019	chr2	173503304	173529926	+	173503304	173536903	A3SS	ENSMUST00000142820.8	novel	0.60	3	2	3	2	y	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.25	1	3	1	3	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.50	2	2	2	2	y	0.20	1	4	1	4	n	ENSMUSG00000027519.11	Rab22a	chr2	protein_coding	RAB22A, member RAS oncogene family
novel_NIR_11020	chr2	173604003	173613314	+	173610094	173613314	5pMXE	ENSMUST00000154306.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000054455.6	Vapb	chr2	protein_coding	vesicle-associated membrane protein, associated protein B and C
novel_NIR_11021	chr2	173933415	173935227	+	173933415	173934195	3pMXE	ENSMUST00000155000.8	novel	0.20	9	37	9	37	y	0.06	2	31	2	31	n	0.15	9	52	9	52	y	0.04	2	46	2	46	n	0.21	12	46	12	46	y	0.00	0	28	0	28	n	0.05	3	52	3	52	n	0.14	6	36	6	36	n	0.00	0	24	0	24	n	0.00	0	40	0	40	n	0.07	3	42	3	42	n	0.07	3	40	3	40	n	ENSMUSG00000027522.16	Stx16	chr2	protein_coding	syntaxin 16
novel_NIR_11022	chr2	173933415	173935227	+	173933415;173934360	173934195;173935227	ES	ENSMUST00000147038.8	novel	0.20	9	35.5	9	37;34	y	0.06	2	29.5	2	31;28	n	0.15	9	49.5	9	52;47	y	0.04	2	44.0	2	46;42	n	0.16	12	64.0	12	46;82	y	0.00	0	31.5	0	28;35	n	0.05	3	57.5	3	52;63	n	0.15	6	34.5	6	36;33	y	0.00	0	23.5	0	24;23	n	0.00	0	43.5	0	40;47	n	0.07	3	37.5	3	42;33	n	0.07	3	42.0	3	40;44	n	ENSMUSG00000027522.16	Stx16	chr2	protein_coding	syntaxin 16
novel_NIR_11023	chr2	174304422	174305230	-	174304422	174305595	A5SS	ENSMUST00000153132.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000016252.8	Atp5e	chr2	protein_coding	ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit
novel_NIR_11024	chr2	174304422	174305436	-	174304422	174305595	A5SS	ENSMUST00000153132.2	novel	1.00	2	0	2	0	y	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000016252.8	Atp5e	chr2	protein_coding	ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit
novel_NIR_11025	chr2	174310192	174311130	-	174310192	174314625	A5SS	ENSMUST00000120822.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000016257.16	Prelid3b	chr2	protein_coding	PRELI domain containing 3B
novel_NIR_11026	chr2	175432263	175442798	+	175435773	175442798	5pMXE	ENSMUST00000177700.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	5	0	5	0	y	ENSMUSG00000094475.8	Gm11007	chr2	protein_coding	predicted gene 11007
novel_NIR_11027	chr2	175768154	175779809	+	175768154	175769312	3pMXE	ENSMUST00000109008.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000078886.13	Gm2026	chr2	protein_coding	predicted gene 2026
novel_NIR_11028	chr2	175768154	175779809	+	175768154	175771864	3pMXE	ENSMUST00000174416.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000078886.13	Gm2026	chr2	protein_coding	predicted gene 2026
novel_NIR_11029	chr2	176610520	176610765	-	176610520	176610726	A5SS	ENSMUST00000134982.8	novel	0.14	1	6	1	6	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.80	4	1	4	1	y	ENSMUSG00000074527.12	Gm14296	chr2	protein_coding	predicted gene 14296
novel_NIR_11030	chr2	176723250	176748243	-	176747090	176748243	3pMXE	ENSMUST00000121755.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000083111.2	Gm14421	chr2	unprocessed_pseudogene	predicted gene 14421
novel_NIR_11031	chr2	176887621	176898133	-	176887621	176894620	5pMXE	ENSMUST00000133301.8	novel	0.12	2	14	2	14	n	0.20	4	16	4	16	y	0.11	2	16	2	16	n	0.00	0	20	0	20	n	0.16	6	32	6	32	y	0.00	0	17	0	17	n	0.03	1	39	1	39	n	0.06	1	15	1	15	n	0.13	2	13	2	13	n	0.07	1	14	1	14	n	0.37	10	17	10	17	y	0.09	3	31	3	31	n	ENSMUSG00000078870.10	Gm14410	chr2	protein_coding	predicted gene 14410
novel_NIR_11032	chr2	176887621	176898133	-	176887621;176894674	176894620;176898133	ES	ENSMUST00000108964.2	novel	0.11	2	15.5	2	14;17	n	0.21	4	15.5	4	16;15	y	0.11	2	16.5	2	16;17	n	0.00	0	22.5	0	20;25	n	0.16	6	30.5	6	32;29	y	0.00	0	17.5	0	17;18	n	0.03	1	36.5	1	39;34	n	0.06	1	15.5	1	15;16	n	0.12	2	14.5	2	13;16	n	0.05	1	19.5	1	14;25	n	0.38	10	16.0	10	17;15	y	0.12	3	22.5	3	31;14	n	ENSMUSG00000078870.10	Gm14410	chr2	protein_coding	predicted gene 14410
novel_NIR_11033	chr2	176887621	176898161	-	176887621	176894620	5pMXE	ENSMUST00000133301.8	novel	0.07	1	14	1	14	n	0.00	0	16	0	16	n	0.16	3	16	3	16	y	0.05	1	20	1	20	n	0.03	1	32	1	32	n	0.00	0	17	0	17	n	0.00	0	39	0	39	n	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.03	1	31	1	31	n	ENSMUSG00000078870.10	Gm14410	chr2	protein_coding	predicted gene 14410
novel_NIR_11034	chr2	177081346	177085087	-	177081346	177086490	A5SS	ENSMUST00000128657.8	novel	0.80	4	1	4	1	y	0.50	1	1	1	1	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.33	1	2	1	2	n	0.67	2	1	2	1	y	ENSMUSG00000078867.10	Gm14418	chr2	protein_coding	predicted gene 14418
novel_NIR_11035	chr2	177081346	177085087	-	177081346;177081651	177081615;177085087	ES	ENSMUST00000149689.2	novel	0.89	4	0.5	4	0;1	y	0.29	1	2.5	1	3;2	n	0.50	1	1.0	1	1;1	n	0.00	0	0.5	0	0;1	n	0.27	2	5.5	2	5;6	y	0.22	1	3.5	1	3;4	n	0.17	1	5.0	1	5;5	n	1.00	1	0.0	1	0;0	n	0.00	0	4.0	0	4;4	n	0.20	1	4.0	1	3;5	n	0.29	1	2.5	1	3;2	n	0.33	2	4.0	2	4;4	y	ENSMUSG00000078867.10	Gm14418	chr2	protein_coding	predicted gene 14418
novel_NIR_11036	chr2	177081346	177089234	-	177081346	177081615	A5SS&ES	ENSMUST00000149689.2	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.29	2	5	2	5	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000078867.10	Gm14418	chr2	protein_coding	predicted gene 14418
novel_NIR_11037	chr2	177081346	177089234	-	177081346	177086490	5pMXE	ENSMUST00000128657.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000078867.10	Gm14418	chr2	protein_coding	predicted gene 14418
novel_NIR_11038	chr2	177081346	177090017	-	177081346	177086490	5pMXE	ENSMUST00000128657.8	novel	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	ENSMUSG00000078867.10	Gm14418	chr2	protein_coding	predicted gene 14418
novel_NIR_11039	chr2	177081346	177090017	-	177081346;177086544	177086490;177090017	ES	ENSMUST00000108955.2	novel	0.00	0	2.5	0	1;4	n	0.18	1	4.5	1	1;8	n	0.00	0	3.0	0	2;4	n	0.00	0	6.5	0	2;11	n	0.26	3	8.5	3	0;17	y	0.40	1	1.5	1	0;3	n	0.00	0	7.5	0	0;15	n	0.00	0	3.5	0	2;5	n	0.00	0	8.5	0	3;14	n	0.00	0	5.0	0	2;8	n	0.09	1	10.0	1	2;18	n	0.00	0	5.5	0	1;10	n	ENSMUSG00000078867.10	Gm14418	chr2	protein_coding	predicted gene 14418
novel_NIR_11040	chr2	177081651	177086490	-	177081346	177086490	A3SS	ENSMUST00000128657.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000078867.10	Gm14418	chr2	protein_coding	predicted gene 14418
novel_NIR_11041	chr2	177081651	177086490	-	177081651;177085188	177085087;177086490	ES	ENSMUST00000149689.2	novel	0.00	0	2.5	0	1;4	n	0.00	0	2.5	0	2;3	n	0.29	1	2.5	1	1;4	n	0.00	0	3.5	0	1;6	n	0.35	4	7.5	4	6;9	y	0.00	0	4.0	0	4;4	n	0.13	1	6.5	1	5;8	n	0.00	0	0.5	0	0;1	n	0.00	0	4.5	0	4;5	n	0.00	0	5.0	0	5;5	n	0.00	0	5.0	0	2;8	n	0.00	0	4.5	0	4;5	n	ENSMUSG00000078867.10	Gm14418	chr2	protein_coding	predicted gene 14418
novel_NIR_11042	chr2	177085555	177086490	-	177081346	177086490	A3SS	ENSMUST00000128657.8	novel	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.71	5	2	5	2	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.25	1	3	1	3	n	0.50	2	2	2	2	n	0.50	2	2	2	2	n	0.00	0	1	0	1	n	ENSMUSG00000078867.10	Gm14418	chr2	protein_coding	predicted gene 14418
novel_NIR_11043	chr2	177085555	177086490	-	177085188	177086490	A3SS	ENSMUST00000149689.2	novel	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.45	5	6	5	6	y	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.11	1	8	1	8	n	0.50	1	1	1	1	n	0.17	1	5	1	5	n	0.29	2	5	2	5	y	0.20	2	8	2	8	y	0.00	0	5	0	5	n	ENSMUSG00000078867.10	Gm14418	chr2	protein_coding	predicted gene 14418
novel_NIR_11044	chr2	177193590;177194987	177194886;177198702	+	177193590	177198702	cassetteExon	ENSMUST00000142549.2	novel	0.17	11.0	54	0;22	54	n	0.10	6.5	59	0;13	59	n	0.15	5.5	30	0;11	30	n	0.24	16.0	51	0;32	51	n	0.27	12.0	33	0;24	33	n	0.07	1.5	19	0;3	19	n	0.22	12.5	45	0;25	45	n	0.18	6.5	30	0;13	30	n	0.31	15.5	35	0;31	35	n	0.28	22.0	57	15;29	57	y	0.29	29.5	72	15;44	72	y	0.20	11.5	46	0;23	46	n	ENSMUSG00000094786.2	Gm14403	chr2	protein_coding	predicted gene 14403
novel_NIR_11045	chr2	177194987	177198702	+	177190110	177198702	A5SS	ENSMUST00000108947.3	novel	0.88	22	3	22	3	y	0.81	13	3	13	3	y	0.92	11	1	11	1	y	0.94	32	2	32	2	y	0.92	24	2	24	2	y	1.00	3	0	3	0	y	0.86	25	4	25	4	y	1.00	13	0	13	0	y	0.94	31	2	31	2	y	0.91	29	3	29	3	y	0.90	44	5	44	5	y	0.88	23	3	23	3	y	ENSMUSG00000094786.2	Gm14403	chr2	protein_coding	predicted gene 14403
novel_NIR_11046	chr2	177194987	177198702	+	177193590	177198702	A5SS	ENSMUST00000142549.2	novel	0.29	22	54	22	54	y	0.18	13	59	13	59	y	0.27	11	30	11	30	y	0.39	32	51	32	51	y	0.42	24	33	24	33	y	0.14	3	19	3	19	n	0.36	25	45	25	45	y	0.30	13	30	13	30	y	0.47	31	35	31	35	y	0.34	29	57	29	57	n	0.38	44	72	44	72	n	0.33	23	46	23	46	y	ENSMUSG00000094786.2	Gm14403	chr2	protein_coding	predicted gene 14403
novel_NIR_11047	chr2	177406096	177409532	+	177404693	177409532	A5SS	ENSMUST00000148388.2	novel	0.11	1	8	1	8	n	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.75	3	1	3	1	y	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	20	0	20	n	0.00	0	12	0	12	n	ENSMUSG00000078864.11	Gm14322	chr2	protein_coding	predicted gene 14322
novel_NIR_11048	chr2	177545520	177567352	-	177545520;177563608	177563482;177567352	ES	ENSMUST00000108934.9	novel	0.00	0	4.5	0	4;5	n	0.00	0	1.5	0	2;1	n	0.00	0	1.5	0	1;2	n	0.00	0	1.0	0	1;1	n	0.00	0	2.5	0	0;5	n	0.00	0	1.5	0	1;2	n	0.00	0	6.0	0	4;8	n	0.00	0	2.0	0	1;3	n	0.00	0	2.0	0	1;3	n	0.00	0	3.5	0	2;5	n	0.00	0	6.5	0	3;10	n	0.75	3	1.0	3	2;0	y	ENSMUSG00000074529.11	Zfp972	chr2	protein_coding	zinc finger protein 972
novel_NIR_11049	chr2	177697002	177711348	-	177710193	177711348	3pMXE	ENSMUST00000108924.9	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.44	4	5	4	5	y	0.40	2	3	2	3	y	0.67	6	3	6	3	y	-	-	-	-	-	-	0.50	1	1	1	1	n	0.60	3	2	3	2	y	0.00	0	2	0	2	n	0.20	1	4	1	4	n	ENSMUSG00000078861.9	Zfp931	chr2	protein_coding	zinc finger protein 931
novel_NIR_11050	chr2	177700490	177711348	-	177710193	177711348	3pMXE	ENSMUST00000108924.9	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.40	2	3	2	3	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000078861.9	Zfp931	chr2	protein_coding	zinc finger protein 931
novel_NIR_11051	chr2	177710786	177711348	-	177710193	177711348	A3SS	ENSMUST00000108924.9	novel	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	ENSMUSG00000078861.9	Zfp931	chr2	protein_coding	zinc finger protein 931
novel_NIR_11052	chr2	179555399	179555737	-	179555399	179562945	A5SS	ENSMUST00000041618.13	novel	0.09	2	21	2	21	n	0.09	2	21	2	21	n	0.23	5	17	5	17	y	0.06	2	30	2	30	n	0.08	3	33	3	33	n	0.00	0	21	0	21	n	0.24	7	22	7	22	y	0.23	5	17	5	17	y	0.09	2	20	2	20	n	0.00	0	31	0	31	n	0.07	2	28	2	28	n	0.04	1	23	1	23	n	ENSMUSG00000039117.17	Taf4	chr2	protein_coding	TATA-box binding protein associated factor 4
novel_NIR_11053	chr2	179580323	179617206	-	179580323;179581747	179581587;179617206	ES	ENSMUST00000041618.13	novel	0.00	0	14.0	0	18;10	n	0.00	0	10.5	0	10;11	n	0.00	0	17.0	0	14;20	n	0.00	0	13.5	0	19;8	n	0.00	0	16.0	0	22;10	n	0.00	0	5.0	0	9;1	n	0.00	0	16.0	0	21;11	n	0.00	0	13.0	0	16;10	n	0.00	0	9.5	0	15;4	n	0.00	0	17.0	0	18;16	n	0.17	2	10.0	2	11;9	y	0.00	0	16.5	0	18;15	n	ENSMUSG00000039117.17	Taf4	chr2	protein_coding	TATA-box binding protein associated factor 4
novel_NIR_11054	chr2	179681272	179683781	-	179681272	179683432	A5SS	ENSMUST00000126021.8	novel	0.50	2	2	2	2	y	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000027566.16	Psma7	chr2	protein_coding	proteasome subunit alpha 7
novel_NIR_11055	chr2	179712428	179713587	+	179712408	179713587	A5SS	ENSMUST00000147264.8	novel	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.15	2	11	2	11	y	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.11	1	8	1	8	n	0.00	0	11	0	11	n	ENSMUSG00000039069.20	Mtg2	chr2	protein_coding	mitochondrial ribosome associated GTPase 2
novel_NIR_11056	chr2	179713679	179719797	+	179713679	179720412	A3SS	ENSMUST00000108901.8	novel	0.29	4	10	4	10	y	0.60	6	4	6	4	y	0.64	7	4	7	4	y	0.20	2	8	2	8	y	0.80	16	4	16	4	y	1.00	4	0	4	0	y	0.36	5	9	5	9	y	0.00	0	8	0	8	n	0.82	9	2	9	2	y	0.33	7	14	7	14	y	0.82	9	2	9	2	y	0.30	6	14	6	14	y	ENSMUSG00000039069.20	Mtg2	chr2	protein_coding	mitochondrial ribosome associated GTPase 2
novel_NIR_11057	chr2	179713679	179719797	+	179713679;179715026	179714933;179719797	ES	ENSMUST00000147264.8	novel	0.13	4	27.5	4	28;27	n	0.20	6	23.5	6	22;25	y	0.30	7	16.0	7	18;14	y	0.08	2	24.5	2	24;25	n	0.32	16	33.5	16	40;27	y	0.20	4	16.5	4	19;14	y	0.13	5	32.5	5	33;32	n	0.00	0	17.0	0	16;18	n	0.32	9	19.5	9	20;19	y	0.17	7	33.5	7	28;39	y	0.26	9	25.5	9	27;24	y	0.22	6	21.0	6	20;22	y	ENSMUSG00000039069.20	Mtg2	chr2	protein_coding	mitochondrial ribosome associated GTPase 2
novel_NIR_11058	chr2	179713679	179719871	+	179713679	179720412	A3SS	ENSMUST00000108901.8	novel	0.00	0	10	0	10	n	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.11	1	8	1	8	n	0.00	0	4	0	4	n	1.00	2	0	2	0	y	0.10	1	9	1	9	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	14	0	14	n	0.00	0	2	0	2	n	0.07	1	14	1	14	n	ENSMUSG00000039069.20	Mtg2	chr2	protein_coding	mitochondrial ribosome associated GTPase 2
novel_NIR_11059	chr2	179726375	179727173	+	179726382	179727173	A5SS	ENSMUST00000147264.8	novel	0.15	8	47	8	47	y	0.09	6	62	6	62	n	0.09	3	32	3	32	n	0.00	0	55	0	55	n	0.12	9	64	9	64	n	0.12	5	35	5	35	n	0.19	15	62	15	62	y	0.00	0	33	0	33	n	0.17	12	59	12	59	y	0.15	12	66	12	66	y	0.09	6	63	6	63	n	0.00	0	69	0	69	n	ENSMUSG00000039069.20	Mtg2	chr2	protein_coding	mitochondrial ribosome associated GTPase 2
novel_NIR_11060	chr2	179814765	179815706	+	179814765	179816658	A3SS	ENSMUST00000145230.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039041.16	Adrm1	chr2	protein_coding	adhesion regulating molecule 1
novel_NIR_11061	chr2	180226280	180227109	+	180226280	180226487	A3SS&ES	ENSMUST00000123609.8	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.75	3	1	3	1	y	ENSMUSG00000027569.16	Mrgbp	chr2	protein_coding	MRG/MORF4L binding protein
novel_NIR_11062	chr2	180226280	180227109	+	180226280	180226590	A3SS&ES	ENSMUST00000169630.8	novel	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.25	3	9	3	9	y	ENSMUSG00000027569.16	Mrgbp	chr2	protein_coding	MRG/MORF4L binding protein
novel_NIR_11063	chr2	180304376	180309353	-	180304376	180311184	A5SS	ENSMUST00000087517.10	novel	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	25	0	25	n	0.00	0	9	0	9	n	0.00	0	20	0	20	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	23	0	23	n	0.25	2	6	2	6	y	0.00	0	24	0	24	n	ENSMUSG00000038914.16	Dido1	chr2	protein_coding	death inducer-obliterator 1
novel_NIR_11064	chr2	180304376	180309792	-	180304376	180311184	A5SS	ENSMUST00000087517.10	novel	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	25	0	25	n	0.00	0	9	0	9	n	0.00	0	20	0	20	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	23	0	23	n	0.25	2	6	2	6	y	0.04	1	24	1	24	n	ENSMUSG00000038914.16	Dido1	chr2	protein_coding	death inducer-obliterator 1
novel_NIR_11065	chr2	180329590	180333657	-	180329590;180331448	180330617;180333657	ES	ENSMUST00000087517.10	novel	0.00	0	20.0	0	24;16	n	0.00	0	11.5	0	11;12	n	0.03	1	33.0	1	35;31	n	0.03	1	32.0	1	35;29	n	0.00	0	35.0	0	38;32	n	0.00	0	22.5	0	27;18	n	0.10	3	27.5	3	35;20	n	0.00	0	25.5	0	36;15	n	0.08	3	36.0	3	49;23	n	0.08	3	35.5	3	42;29	n	0.00	0	27.0	0	38;16	n	0.18	7	31.0	7	35;27	y	ENSMUSG00000038914.16	Dido1	chr2	protein_coding	death inducer-obliterator 1
novel_NIR_11066	chr2	180333841	180342859	-	180333841	180343754	A5SS	ENSMUST00000087517.10	novel	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.00	0	31	0	31	n	0.00	0	28	0	28	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.16	3	16	3	16	y	0.07	1	14	1	14	n	0.14	2	12	2	12	n	0.06	1	17	1	17	n	ENSMUSG00000038914.16	Dido1	chr2	protein_coding	death inducer-obliterator 1
novel_NIR_11067	chr2	180333841	180342859	-	180333841	180351703	A5SS	ENSMUST00000103057.8	novel	0.00	0	8	0	8	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.60	3	2	3	2	y	0.14	1	6	1	6	n	0.40	2	3	2	3	y	0.25	1	3	1	3	n	ENSMUSG00000038914.16	Dido1	chr2	protein_coding	death inducer-obliterator 1
novel_NIR_11068	chr2	180333841	180342950	-	180333841	180351703	A5SS	ENSMUST00000103057.8	novel	0.00	0	8	0	8	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.38	3	5	3	5	y	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000038914.16	Dido1	chr2	protein_coding	death inducer-obliterator 1
novel_NIR_11069	chr2	180352279	180354984	+	180353643	180354984	5pMXE	ENSMUST00000150067.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	9	0	9	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	5	0	5	0	y	1.00	5	0	5	0	y	1.00	8	0	8	0	y	1.00	1	0	1	0	n	1.00	8	0	8	0	y	ENSMUSG00000027573.12	Gid8	chr2	protein_coding	GID complex subunit 8
novel_NIR_11070	chr2	180352446	180354984	+	180353643	180354984	5pMXE	ENSMUST00000150067.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	ENSMUSG00000027573.12	Gid8	chr2	protein_coding	GID complex subunit 8
novel_NIR_11071	chr2	180352616	180354984	+	180353643	180354984	5pMXE	ENSMUST00000150067.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027573.12	Gid8	chr2	protein_coding	GID complex subunit 8
novel_NIR_11072	chr2	180374365	180377636	+	180374365;180375609	180375510;180377636	ES	ENSMUST00000094218.4	novel	0.00	0	8.5	0	10;7	n	0.00	0	9.0	0	13;5	n	0.00	0	52.0	0	66;38	n	0.15	2	11.5	2	16;7	y	0.07	2	25.0	2	30;20	n	0.05	2	36.5	2	43;30	n	0.00	0	12.5	0	17;8	n	0.03	1	31.5	1	35;28	n	0.00	0	8.0	0	13;3	n	0.00	0	8.5	0	12;5	n	0.00	0	10.5	0	12;9	n	0.00	0	12.5	0	19;6	n	ENSMUSG00000023393.16	Slc17a9	chr2	protein_coding	solute carrier family 17, member 9
novel_NIR_11073	chr2	180378896	180379258	+	180378896	180380202	A3SS	ENSMUST00000154882.8	novel	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.07	1	13	1	13	n	-	-	-	-	-	-	-	-	-	-	-	-	0.25	1	3	1	3	n	0.60	3	2	3	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000023393.16	Slc17a9	chr2	protein_coding	solute carrier family 17, member 9
novel_NIR_11074	chr2	180379472	180379777	+	180379472	180380202	A3SS	ENSMUST00000094218.4	novel	0.00	0	22	0	22	n	0.00	0	25	0	25	n	0.00	0	70	0	70	n	0.00	0	14	0	14	n	0.00	0	41	0	41	n	0.00	0	61	0	61	n	0.00	0	23	0	23	n	0.00	0	42	0	42	n	0.00	0	14	0	14	n	0.17	2	10	2	10	y	0.00	0	22	0	22	n	0.00	0	20	0	20	n	ENSMUSG00000023393.16	Slc17a9	chr2	protein_coding	solute carrier family 17, member 9
novel_NIR_11075	chr2	180547461	180560928	-	180554000	180560928	3pMXE	ENSMUST00000124666.2	novel	0.06	2	30	2	30	n	0.16	5	27	5	27	y	0.00	0	86	0	86	n	0.04	2	51	2	51	n	0.00	0	84	0	84	n	0.00	0	31	0	31	n	0.03	2	72	2	72	n	0.04	2	43	2	43	n	0.00	0	42	0	42	n	0.02	1	60	1	60	n	0.00	0	39	0	39	n	0.03	2	71	2	71	n	ENSMUSG00000038848.15	Ythdf1	chr2	protein_coding	YTH N6-methyladenosine RNA binding protein 1
novel_NIR_11076	chr2	180869762	180870574	-	180869629	180870574	A3SS	ENSMUST00000094203.11	novel	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	8	0	8	0	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	9	0	9	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	ENSMUSG00000027580.18	Helz2	chr2	protein_coding	helicase with zinc finger 2, transcriptional coactivator
novel_NIR_11077	chr2	180869933	180870574	-	180869629	180870574	A3SS	ENSMUST00000094203.11	novel	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027580.18	Helz2	chr2	protein_coding	helicase with zinc finger 2, transcriptional coactivator
novel_NIR_11078	chr2	180872919	180873024	-	180872713	180873024	A3SS	ENSMUST00000121484.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	ENSMUSG00000027580.18	Helz2	chr2	protein_coding	helicase with zinc finger 2, transcriptional coactivator
novel_NIR_11079	chr2	180872922	180873024	-	180872713	180873024	A3SS	ENSMUST00000121484.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027580.18	Helz2	chr2	protein_coding	helicase with zinc finger 2, transcriptional coactivator
novel_NIR_11080	chr2	18087536	18097595	+	18076015	18097595	A5SS	ENSMUST00000114671.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000026743.17	Mllt10	chr2	protein_coding	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10
novel_NIR_11081	chr2	18087536	18097595	+	18087536	18106269	A3SS	ENSMUST00000153279.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000026743.17	Mllt10	chr2	protein_coding	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10
novel_NIR_11082	chr2	180882864	180885727	-	180882864	180883605	5pMXE	ENSMUST00000121484.2	novel	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.60	3	2	3	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	ENSMUSG00000027580.18	Helz2	chr2	protein_coding	helicase with zinc finger 2, transcriptional coactivator
novel_NIR_11083	chr2	180882864	180885727	-	180882864	180883759	5pMXE	ENSMUST00000108831.8	novel	0.00	0	13	0	13	n	0.17	1	5	1	5	n	0.00	0	14	0	14	n	0.00	0	21	0	21	n	0.00	0	16	0	16	n	0.00	0	12	0	12	n	0.17	1	5	1	5	n	0.19	3	13	3	13	y	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.14	1	6	1	6	n	0.25	1	3	1	3	n	ENSMUSG00000027580.18	Helz2	chr2	protein_coding	helicase with zinc finger 2, transcriptional coactivator
novel_NIR_11084	chr2	180919914	180926354	-	180919914	180928790	A5SS	ENSMUST00000130475.8	novel	-	-	-	-	-	-	0.50	1	1	1	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.11	1	8	1	8	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.50	1	1	1	1	n	1.00	5	0	5	0	y	0.33	1	2	1	2	n	-	-	-	-	-	-	ENSMUSG00000038705.14	Gmeb2	chr2	protein_coding	glucocorticoid modulatory element binding protein 2
novel_NIR_11085	chr2	180919914	180926354	-	180919914	180929677	A5SS	ENSMUST00000049032.13	novel	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.07	1	13	1	13	n	0.00	0	7	0	7	n	0.08	1	11	1	11	n	0.20	2	8	2	8	y	0.00	0	11	0	11	n	0.08	1	11	1	11	n	0.17	1	5	1	5	n	0.38	5	8	5	8	y	0.14	1	6	1	6	n	0.00	0	5	0	5	n	ENSMUSG00000038705.14	Gmeb2	chr2	protein_coding	glucocorticoid modulatory element binding protein 2
novel_NIR_11086	chr2	180919914	180928796	-	180919914	180928790	A5SS	ENSMUST00000130475.8	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.20	2	8	2	8	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000038705.14	Gmeb2	chr2	protein_coding	glucocorticoid modulatory element binding protein 2
novel_NIR_11087	chr2	180919914	180928796	-	180919914	180929677	A5SS	ENSMUST00000049032.13	novel	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.12	1	7	1	7	n	0.15	2	11	2	11	y	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	ENSMUSG00000038705.14	Gmeb2	chr2	protein_coding	glucocorticoid modulatory element binding protein 2
novel_NIR_11088	chr2	180997605	180997691	+	180997605	180997717	A3SS	ENSMUST00000098971.11	novel	0.21	4	15	4	15	y	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.12	4	29	4	29	n	0.00	0	7	0	7	n	0.00	0	26	0	26	n	0.00	0	14	0	14	n	0.12	3	21	3	21	n	0.06	1	17	1	17	n	0.00	0	17	0	17	n	0.04	1	27	1	27	n	ENSMUSG00000038685.19	Rtel1	chr2	protein_coding	regulator of telomere elongation helicase 1
novel_NIR_11089	chr2	181002859	181003184	-	181001532	181003184	A3SS	ENSMUST00000185118.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.40	2	3	2	3	y	0.40	2	3	2	3	y	ENSMUSG00000038671.16	Arfrp1	chr2	protein_coding	ADP-ribosylation factor related protein 1
novel_NIR_11090	chr2	181002889	181003184	-	181001532	181003184	A3SS	ENSMUST00000185118.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.40	4	6	4	6	y	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	ENSMUSG00000038671.16	Arfrp1	chr2	protein_coding	ADP-ribosylation factor related protein 1
novel_NIR_11091	chr2	181007285	181007438	+	181007169	181007438	A5SS	ENSMUST00000029105.12	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	1.00	2	0	2	0	y	0.50	1	1	1	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	ENSMUSG00000027582.17	Zgpat	chr2	protein_coding	zinc finger, CCCH-type with G patch domain
novel_NIR_11092	chr2	181027455	181027573	+	181027455	181027913	A3SS	ENSMUST00000176590.2	novel	1.00	7	0	7	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	7	0	7	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000085028.3	Slc2a4rg-ps	chr2	transcribed_unitary_pseudogene	Slc2a4 regulator, pseudogene
novel_NIR_11093	chr2	181028102	181028201	+	181028102	181028178	A3SS	ENSMUST00000127559.2	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.67	2	1	2	1	y	0.00	0	3	0	3	n	ENSMUSG00000085028.3	Slc2a4rg-ps	chr2	transcribed_unitary_pseudogene	Slc2a4 regulator, pseudogene
novel_NIR_11094	chr2	181028102	181028358	+	181028102	181028178	A3SS	ENSMUST00000127559.2	novel	-	-	-	-	-	-	0.40	2	3	2	3	y	0.50	1	1	1	1	n	1.00	3	0	3	0	y	0.50	3	3	3	3	y	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.80	4	1	4	1	y	0.25	1	3	1	3	n	ENSMUSG00000085028.3	Slc2a4rg-ps	chr2	transcribed_unitary_pseudogene	Slc2a4 regulator, pseudogene
novel_NIR_11095	chr2	181028102	181028358	+	181028102;181028277	181028178;181028358	ES	ENSMUST00000176590.2	novel	-	-	-	-	-	-	0.57	2	1.5	2	3;0	y	0.67	1	0.5	1	1;0	n	1.00	3	0.0	3	0;0	y	0.67	3	1.5	3	3;0	y	-	-	-	-	-	-	0.40	1	1.5	1	3;0	n	0.00	0	1.0	0	2;0	n	0.00	0	1.0	0	2;0	n	0.50	2	2.0	2	4;0	y	0.89	4	0.5	4	1;0	y	0.40	1	1.5	1	3;0	n	ENSMUSG00000085028.3	Slc2a4rg-ps	chr2	transcribed_unitary_pseudogene	Slc2a4 regulator, pseudogene
novel_NIR_11096	chr2	181028282	181028358	+	181028277	181028358	A5SS	ENSMUST00000176590.2	novel	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000085028.3	Slc2a4rg-ps	chr2	transcribed_unitary_pseudogene	Slc2a4 regulator, pseudogene
novel_NIR_11097	chr2	181150060	181153364	+	181150060	181152297	A3SS&ES	ENSMUST00000108799.10	novel	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.62	5	3	5	3	y	0.50	1	1	1	1	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.33	1	2	1	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	ENSMUSG00000000827.19	Tpd52l2	chr2	protein_coding	tumor protein D52-like 2
novel_NIR_11098	chr2	181150060	181153364	+	181150060	181153367	A3SS	ENSMUST00000149163.8	novel	0.00	0	7	0	7	n	0.33	2	4	2	4	y	0.13	5	33	5	33	n	0.10	1	9	1	9	n	0.11	2	16	2	16	n	0.00	0	8	0	8	n	0.00	0	17	0	17	n	0.17	1	5	1	5	n	0.10	1	9	1	9	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.14	2	12	2	12	n	ENSMUSG00000000827.19	Tpd52l2	chr2	protein_coding	tumor protein D52-like 2
novel_NIR_11099	chr2	181162490	181182330	+	181162490	181163028	A3SS&ES	ENSMUST00000108797.8	novel	0.12	1	7	1	7	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.11	1	8	1	8	n	0.08	1	12	1	12	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.33	4	8	4	8	y	0.00	0	6	0	6	n	0.00	0	9	0	9	n	ENSMUSG00000000826.17	Dnajc5	chr2	protein_coding	DnaJ heat shock protein family (Hsp40) member C5
novel_NIR_11100	chr2	181163080	181182330	+	181163080	181188164	A3SS	ENSMUST00000108797.8	novel	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.06	1	17	1	17	n	0.22	2	7	2	7	y	0.06	1	16	1	16	n	0.00	0	1	0	1	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.12	1	7	1	7	n	0.00	0	13	0	13	n	ENSMUSG00000000826.17	Dnajc5	chr2	protein_coding	DnaJ heat shock protein family (Hsp40) member C5
novel_NIR_11101	chr2	181212348	181214867	-	181212391	181214867	A3SS	ENSMUST00000129469.8	novel	0.56	5	4	5	4	y	0.44	4	5	4	5	y	0.25	1	3	1	3	n	0.33	1	2	1	2	n	0.27	3	8	3	8	y	0.00	0	2	0	2	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.18	2	9	2	9	y	0.80	4	1	4	1	y	0.20	2	8	2	8	y	ENSMUSG00000089917.8	Uckl1	chr2	protein_coding	uridine-cytidine kinase 1-like 1
novel_NIR_11102	chr2	181212348	181214867	-	181214279	181214867	A3SS&ES	ENSMUST00000057816.15	novel	0.19	5	21	5	21	y	0.15	4	23	4	23	y	0.04	1	23	1	23	n	0.03	1	28	1	28	n	0.08	3	35	3	35	n	0.00	0	24	0	24	n	0.03	1	30	1	30	n	0.00	0	20	0	20	n	0.04	1	26	1	26	n	0.05	2	38	2	38	n	0.15	4	23	4	23	y	0.06	2	32	2	32	n	ENSMUSG00000089917.8	Uckl1	chr2	protein_coding	uridine-cytidine kinase 1-like 1
novel_NIR_11103	chr2	181212391	181213031	-	181212391	181213296	A5SS	ENSMUST00000142296.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000089917.8	Uckl1	chr2	protein_coding	uridine-cytidine kinase 1-like 1
novel_NIR_11104	chr2	181212391;181213050	181213031;181214867	-	181212391	181214867	cassetteExon	ENSMUST00000129469.8	novel	0.00	0.0	4	0;0	4	n	0.00	0.0	5	0;0	5	n	0.14	0.5	3	1;0	3	n	0.00	0.0	2	0;0	2	n	0.11	1.0	8	1;1	8	n	0.00	0.0	2	0;0	2	n	0.40	2.0	3	2;2	3	y	-	-	-	-	-	-	0.00	0.0	3	0;0	3	n	0.05	0.5	9	0;1	9	n	0.00	0.0	1	0;0	1	n	0.11	1.0	8	1;1	8	n	ENSMUSG00000089917.8	Uckl1	chr2	protein_coding	uridine-cytidine kinase 1-like 1
novel_NIR_11105	chr2	181216830	181222859	-	181216830	181220340	5pMXE	ENSMUST00000136875.2	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000089917.8	Uckl1	chr2	protein_coding	uridine-cytidine kinase 1-like 1
novel_NIR_11106	chr2	181216830	181222859	-	181216830	181223196	A5SS	ENSMUST00000131949.2	novel	1.00	1	0	1	0	n	0.67	2	1	2	1	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.50	3	3	3	3	y	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	ENSMUSG00000089917.8	Uckl1	chr2	protein_coding	uridine-cytidine kinase 1-like 1
novel_NIR_11107	chr2	181216830	181222859	-	181216830	181226619	A5SS	ENSMUST00000144856.8	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.75	3	1	3	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000089917.8	Uckl1	chr2	protein_coding	uridine-cytidine kinase 1-like 1
novel_NIR_11108	chr2	181216830	181222877	-	181216830	181220340	5pMXE	ENSMUST00000136875.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000089917.8	Uckl1	chr2	protein_coding	uridine-cytidine kinase 1-like 1
novel_NIR_11109	chr2	181216830	181222877	-	181216830	181223196	A5SS	ENSMUST00000131949.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000089917.8	Uckl1	chr2	protein_coding	uridine-cytidine kinase 1-like 1
novel_NIR_11110	chr2	181216830	181222877	-	181216830	181223649	A5SS	ENSMUST00000057816.15	novel	0.00	0	22	0	22	n	0.00	0	17	0	17	n	0.00	0	26	0	26	n	0.00	0	17	0	17	n	0.00	0	24	0	24	n	0.24	4	13	4	13	y	0.00	0	36	0	36	n	0.04	1	24	1	24	n	0.00	0	24	0	24	n	0.00	0	26	0	26	n	0.00	0	25	0	25	n	0.00	0	31	0	31	n	ENSMUSG00000089917.8	Uckl1	chr2	protein_coding	uridine-cytidine kinase 1-like 1
novel_NIR_11111	chr2	181216830	181222877	-	181216830	181226619	A5SS	ENSMUST00000144856.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000089917.8	Uckl1	chr2	protein_coding	uridine-cytidine kinase 1-like 1
novel_NIR_11112	chr2	181218451	181223649	-	181216830	181223649	A3SS	ENSMUST00000057816.15	novel	0.08	2	22	2	22	n	0.15	3	17	3	17	n	0.00	0	26	0	26	n	0.15	3	17	3	17	y	0.00	0	24	0	24	n	0.00	0	13	0	13	n	0.03	1	36	1	36	n	0.00	0	24	0	24	n	0.00	0	24	0	24	n	0.00	0	26	0	26	n	0.00	0	25	0	25	n	0.00	0	31	0	31	n	ENSMUSG00000089917.8	Uckl1	chr2	protein_coding	uridine-cytidine kinase 1-like 1
novel_NIR_11113	chr2	181230313	181230409	-	181230313	181230418	A5SS	ENSMUST00000131866.2	novel	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.30	3	7	3	7	y	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000000823.17	Zfp512b	chr2	protein_coding	zinc finger protein 512B
novel_NIR_11114	chr2	181230313	181230512	-	181230313	181230418	A5SS	ENSMUST00000131866.2	novel	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.22	2	7	2	7	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000000823.17	Zfp512b	chr2	protein_coding	zinc finger protein 512B
novel_NIR_11115	chr2	181232778	181234447	-	181232778	181234207	A5SS	ENSMUST00000133598.2	novel	0.10	1	9	1	9	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.50	4	4	4	4	y	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.23	3	10	3	10	y	0.00	0	8	0	8	n	0.09	1	10	1	10	n	0.00	0	5	0	5	n	0.50	1	1	1	1	n	0.08	1	12	1	12	n	ENSMUSG00000000823.17	Zfp512b	chr2	protein_coding	zinc finger protein 512B
novel_NIR_11116	chr2	181232778	181234447	-	181232778	181234214	A5SS	ENSMUST00000108789.9	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	ENSMUSG00000000823.17	Zfp512b	chr2	protein_coding	zinc finger protein 512B
novel_NIR_11117	chr2	18128623	18151588	+	18128623	18130945	3pMXE	ENSMUST00000154041.8	novel	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.30	8	19	8	19	y	0.05	1	18	1	18	n	0.20	7	28	7	28	y	0.00	0	15	0	15	n	0.00	0	19	0	19	n	0.00	0	20	0	20	n	0.10	1	9	1	9	n	0.07	2	28	2	28	n	0.00	0	13	0	13	n	0.07	2	27	2	27	n	ENSMUSG00000026743.17	Mllt10	chr2	protein_coding	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10
novel_NIR_11118	chr2	18128623	18151588	+	18128623;18131040	18130945;18151588	ES	ENSMUST00000028076.15	novel	0.00	0	12.0	0	10;14	n	0.00	0	5.5	0	5;6	n	0.25	8	24.0	8	19;29	y	0.07	1	13.0	1	18;8	n	0.20	7	27.5	7	28;27	y	0.00	0	15.0	0	15;15	n	0.00	0	21.0	0	19;23	n	0.00	0	17.0	0	20;14	n	0.08	1	12.0	1	9;15	n	0.08	2	24.0	2	28;20	n	0.00	0	12.0	0	13;11	n	0.08	2	22.0	2	27;17	n	ENSMUSG00000026743.17	Mllt10	chr2	protein_coding	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10
novel_NIR_11119	chr2	18128623	18151588	+	18131040	18151588	5pMXE	ENSMUST00000114669.2	novel	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.22	8	29	8	29	y	0.11	1	8	1	8	n	0.21	7	27	7	27	y	0.00	0	15	0	15	n	0.00	0	23	0	23	n	0.00	0	14	0	14	n	0.06	1	15	1	15	n	0.09	2	20	2	20	n	0.00	0	11	0	11	n	0.11	2	17	2	17	n	ENSMUSG00000026743.17	Mllt10	chr2	protein_coding	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10
novel_NIR_11120	chr2	181331088	181331495	-	181330511	181331495	A3SS	ENSMUST00000108779.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000002458.14	Rgs19	chr2	protein_coding	regulator of G-protein signaling 19
novel_NIR_11121	chr2	181331088	181331495	-	181331088;181331404	181331170;181331495	ES	ENSMUST00000002532.9	novel	0.00	0	9.0	0	4;14	n	0.00	0	5.0	0	5;5	n	0.13	1	6.5	1	8;5	n	0.00	0	0.5	0	0;1	n	0.00	0	7.5	0	9;6	n	0.00	0	2.5	0	1;4	n	0.36	2	3.5	2	2;5	y	0.00	0	4.5	0	6;3	n	0.00	0	1.0	0	2;0	n	0.00	0	5.5	0	6;5	n	0.00	0	5.0	0	1;9	n	0.00	0	3.0	0	4;2	n	ENSMUSG00000002458.14	Rgs19	chr2	protein_coding	regulator of G-protein signaling 19
novel_NIR_11122	chr2	181331088	181331495	-	181331404	181331495	A3SS	ENSMUST00000108769.8	novel	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.17	1	5	1	5	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.29	2	5	2	5	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	ENSMUSG00000002458.14	Rgs19	chr2	protein_coding	regulator of G-protein signaling 19
novel_NIR_11123	chr2	181488432	181493401	+	181488432	181493375	A3SS	ENSMUST00000108754.8	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.44	4	5	4	5	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000027589.15	Pcmtd2	chr2	protein_coding	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2
novel_NIR_11124	chr2	181493502	181497095	+	181493502	181496731	A3SS	ENSMUST00000029116.14	novel	0.06	3	50	3	50	n	0.14	6	37	6	37	n	0.05	3	54	3	54	n	0.15	9	50	9	50	y	0.05	3	62	3	62	n	0.00	0	23	0	23	n	0.16	13	66	13	66	y	0.04	1	22	1	22	n	0.15	9	51	9	51	y	0.14	10	64	10	64	n	0.24	7	22	7	22	y	0.15	13	73	13	73	y	ENSMUSG00000027589.15	Pcmtd2	chr2	protein_coding	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2
novel_NIR_11125	chr2	181495709	181496731	+	181493506	181496731	A5SS	ENSMUST00000124346.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027589.15	Pcmtd2	chr2	protein_coding	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2
novel_NIR_11126	chr2	18164522	18167132	+	18164522	18167419	A3SS	ENSMUST00000114669.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026743.17	Mllt10	chr2	protein_coding	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10
novel_NIR_11127	chr2	18175109	18191029	+	18175109;18175886	18175854;18191029	ES	ENSMUST00000028076.15	novel	0.13	2	13.5	2	12;15	n	0.17	1	5.0	1	7;3	n	0.21	5	18.5	5	21;16	y	0.00	0	15.5	0	16;15	n	0.21	6	22.5	6	23;22	y	0.11	2	15.5	2	16;15	n	0.06	1	14.5	1	13;16	n	0.00	0	16.0	0	17;15	n	0.07	1	14.0	1	12;16	n	0.27	10	27.0	10	29;25	y	0.11	1	8.5	1	7;10	n	0.15	4	22.5	4	24;21	y	ENSMUSG00000026743.17	Mllt10	chr2	protein_coding	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10
novel_NIR_11128	chr2	18298855	18300426	-	18298855	18397102	A5SS	ENSMUST00000168723.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000026740.13	Dnajc1	chr2	protein_coding	DnaJ heat shock protein family (Hsp40) member C1
novel_NIR_11129	chr2	19383073	19384530	+	19383073	19398019	A3SS	ENSMUST00000126894.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000023094.15	Msrb2	chr2	protein_coding	methionine sulfoxide reductase B2
novel_NIR_11130	chr2	20793422	20802691	+	20793422	20802688	A3SS	ENSMUST00000114627.8	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.22	2	7	2	7	y	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	ENSMUSG00000036617.18	Etl4	chr2	protein_coding	enhancer trap locus 4
novel_NIR_11131	chr2	20803594	20810396	+	20803594	20806353	A3SS&ES	ENSMUST00000045555.11	novel	0.12	1	7	1	7	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.38	3	5	3	5	y	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.25	3	9	3	9	y	ENSMUSG00000036617.18	Etl4	chr2	protein_coding	enhancer trap locus 4
novel_NIR_11132	chr2	20803594	20810396	+	20803594	20812713	A3SS	ENSMUST00000114604.9	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.60	3	2	3	2	y	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000036617.18	Etl4	chr2	protein_coding	enhancer trap locus 4
novel_NIR_11133	chr2	20803594	20810396	+	20803594;20806472	20806353;20810396	ES	ENSMUST00000114627.8	novel	0.17	1	5.0	1	7;3	n	0.00	0	3.0	0	4;2	n	0.00	0	5.0	0	5;5	n	0.00	0	4.0	0	8;0	n	0.00	0	7.0	0	8;6	n	0.00	0	2.0	0	2;2	n	0.40	3	4.5	3	5;4	y	0.40	2	3.0	2	2;4	y	0.00	0	2.0	0	3;1	n	0.00	0	5.5	0	7;4	n	0.00	0	3.0	0	5;1	n	0.25	3	9.0	3	9;9	y	ENSMUSG00000036617.18	Etl4	chr2	protein_coding	enhancer trap locus 4
novel_NIR_11134	chr2	20974092	20974285	+	20974194	20974285	A5SS	ENSMUST00000126967.2	novel	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.22	2	7	2	7	y	-	-	-	-	-	-	0.47	7	8	7	8	y	0.00	0	3	0	3	n	0.38	6	10	6	10	y	0.30	3	7	3	7	y	0.43	3	4	3	4	y	0.00	0	12	0	12	n	0.20	1	4	1	4	n	0.29	2	5	2	5	y	ENSMUSG00000075514.5	Gm13375	chr2	lncRNA	predicted gene 13375
novel_NIR_11135	chr2	22805540	22819552	+	22805536	22819552	A5SS	ENSMUST00000053729.14	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.18	3	14	3	14	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	ENSMUSG00000026784.15	Pdss1	chr2	protein_coding	prenyl (solanesyl) diphosphate synthase, subunit 1
novel_NIR_11136	chr2	22825651	22843407	+	22825651	22829835	3pMXE	ENSMUST00000053729.14	novel	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.29	2	5	2	5	y	ENSMUSG00000026784.15	Pdss1	chr2	protein_coding	prenyl (solanesyl) diphosphate synthase, subunit 1
novel_NIR_11137	chr2	23049273	23050204	+	23047032	23050204	A5SS	ENSMUST00000147750.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026775.10	Yme1l1	chr2	protein_coding	YME1-like 1 (S. cerevisiae)
novel_NIR_11138	chr2	23405211	23407841	-	23405302	23407841	A3SS	ENSMUST00000132484.7	novel	0.19	3	13	3	13	y	0.00	0	12	0	12	n	0.06	1	17	1	17	n	0.17	2	10	2	10	y	0.00	0	17	0	17	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.08	1	11	1	11	n	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.00	0	22	0	22	n	ENSMUSG00000026771.15	Spopl	chr2	protein_coding	speckle-type BTB/POZ protein-like
novel_NIR_11139	chr2	23407963	23410811	-	23407963	23427340	A5SS	ENSMUST00000132484.7	novel	0.00	0	13	0	13	n	0.25	3	9	3	9	y	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	24	0	24	n	0.00	0	8	0	8	n	0.00	0	28	0	28	n	0.00	0	7	0	7	n	0.00	0	16	0	16	n	0.00	0	20	0	20	n	0.20	2	8	2	8	n	0.06	1	17	1	17	n	ENSMUSG00000026771.15	Spopl	chr2	protein_coding	speckle-type BTB/POZ protein-like
novel_NIR_11140	chr2	23433332	23434758	-	23433336	23434758	A3SS	ENSMUST00000132484.7	novel	0.27	3	8	3	8	y	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	ENSMUSG00000026771.15	Spopl	chr2	protein_coding	speckle-type BTB/POZ protein-like
novel_NIR_11141	chr2	23435591	23452980	-	23435591	23461855	A5SS	ENSMUST00000132484.7	novel	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.10	1	9	1	9	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.12	1	7	1	7	n	0.50	3	3	3	3	y	0.09	1	10	1	10	n	ENSMUSG00000026771.15	Spopl	chr2	protein_coding	speckle-type BTB/POZ protein-like
novel_NIR_11142	chr2	23453067	23461855	-	23435286	23461855	A3SS	ENSMUST00000028110.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000026771.15	Spopl	chr2	protein_coding	speckle-type BTB/POZ protein-like
novel_NIR_11143	chr2	23453067	23461855	-	23435591	23461855	A3SS	ENSMUST00000132484.7	novel	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.20	2	8	2	8	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	ENSMUSG00000026771.15	Spopl	chr2	protein_coding	speckle-type BTB/POZ protein-like
novel_NIR_11144	chr2	23938846	23938986	-	23938846	23939011	A5SS	ENSMUST00000114498.8	novel	0.80	8	2	8	2	y	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.86	12	2	12	2	y	1.00	2	0	2	0	y	0.77	10	3	10	3	y	ENSMUSG00000026986.15	Hnmt	chr2	protein_coding	histamine N-methyltransferase
novel_NIR_11145	chr2	23938846	23938986	-	23938846	23939332	A5SS	ENSMUST00000051416.12	novel	0.21	8	31	8	31	y	0.00	0	10	0	10	n	0.57	4	3	4	3	y	0.00	0	46	0	46	n	0.18	6	28	6	28	y	0.00	0	5	0	5	n	0.13	7	47	7	47	n	0.08	1	12	1	12	n	0.04	2	45	2	45	n	0.20	12	47	12	47	y	0.05	2	42	2	42	n	0.17	10	48	10	48	y	ENSMUSG00000026986.15	Hnmt	chr2	protein_coding	histamine N-methyltransferase
novel_NIR_11146	chr2	24231870	24235532	+	24227004	24235532	A5SS	ENSMUST00000114487.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.69	11	5	11	5	y	-	-	-	-	-	-	-	-	-	-	-	-	0.74	20	7	20	7	y	1.00	1	0	1	0	n	0.88	7	1	7	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026981.16	Il1rn	chr2	protein_coding	interleukin 1 receptor antagonist
novel_NIR_11147	chr2	24231870	24235532	+	24235380	24235532	5pMXE	ENSMUST00000114485.9	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.09	11	105	11	105	n	0.00	0	5	0	5	n	0.00	0	33	0	33	n	0.18	20	94	20	94	y	0.05	1	21	1	21	n	0.08	7	76	7	76	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000026981.16	Il1rn	chr2	protein_coding	interleukin 1 receptor antagonist
novel_NIR_11148	chr2	24235239	24235532	+	24227004	24235532	A5SS	ENSMUST00000114487.9	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026981.16	Il1rn	chr2	protein_coding	interleukin 1 receptor antagonist
novel_NIR_11149	chr2	24235239	24235532	+	24235380	24235532	5pMXE	ENSMUST00000114485.9	novel	0.50	3	3	3	3	y	0.00	0	4	0	4	n	0.00	0	105	0	105	n	0.00	0	5	0	5	n	0.00	0	33	0	33	n	0.00	0	94	0	94	n	0.00	0	21	0	21	n	0.00	0	76	0	76	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000026981.16	Il1rn	chr2	protein_coding	interleukin 1 receptor antagonist
novel_NIR_11150	chr2	24237566	24238533	+	24237566	24239427	A3SS	ENSMUST00000142093.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.55	6	5	6	5	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026981.16	Il1rn	chr2	protein_coding	interleukin 1 receptor antagonist
novel_NIR_11151	chr2	24257814	24257975	+	24257814	24258363	A3SS	ENSMUST00000102942.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026979.17	Psd4	chr2	protein_coding	pleckstrin and Sec7 domain containing 4
novel_NIR_11152	chr2	24257814	24257975	+	24257814	24284034	A3SS	ENSMUST00000140547.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000026979.17	Psd4	chr2	protein_coding	pleckstrin and Sec7 domain containing 4
novel_NIR_11153	chr2	24295842	24296286	+	24295842	24296989	A3SS	ENSMUST00000102942.8	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.22	2	7	2	7	y	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000026979.17	Psd4	chr2	protein_coding	pleckstrin and Sec7 domain containing 4
novel_NIR_11154	chr2	24296410	24296989	+	24295842	24296989	A5SS	ENSMUST00000102942.8	novel	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000026979.17	Psd4	chr2	protein_coding	pleckstrin and Sec7 domain containing 4
novel_NIR_11155	chr2	24738139	24742677	-	24729768	24742677	A3SS	ENSMUST00000150836.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036893.18	Ehmt1	chr2	protein_coding	euchromatic histone methyltransferase 1
novel_NIR_11156	chr2	24748262	24753784	-	24748262;24753423	24753235;24753784	ES	ENSMUST00000147147.8	novel	0.22	4	14.0	4	20;8	y	0.00	0	10.5	0	17;4	n	0.08	2	22.5	2	25;20	n	0.00	0	24.5	0	32;17	n	0.00	0	29.0	0	40;18	n	0.00	0	10.5	0	14;7	n	0.00	0	23.5	0	36;11	n	0.05	1	17.5	1	24;11	n	0.00	0	14.5	0	12;17	n	0.00	0	30.5	0	48;13	n	0.00	0	22.0	0	33;11	n	0.00	0	20.5	0	29;12	n	ENSMUSG00000036893.18	Ehmt1	chr2	protein_coding	euchromatic histone methyltransferase 1
novel_NIR_11157	chr2	24748262	24753784	-	24753423	24753784	A3SS&ES	ENSMUST00000207383.2	novel	0.33	4	8	4	8	y	0.00	0	4	0	4	n	0.09	2	20	2	20	n	0.00	0	17	0	17	n	0.00	0	18	0	18	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.08	1	11	1	11	n	0.00	0	17	0	17	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	ENSMUSG00000036893.18	Ehmt1	chr2	protein_coding	euchromatic histone methyltransferase 1
novel_NIR_11158	chr2	24803410	24809566	-	24774714	24809566	A3SS	ENSMUST00000200655.5	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000036893.18	Ehmt1	chr2	protein_coding	euchromatic histone methyltransferase 1
novel_NIR_11159	chr2	24803410	24809566	-	24777078	24809566	A3SS	ENSMUST00000091348.11	novel	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	2	4	2	4	y	ENSMUSG00000036893.18	Ehmt1	chr2	protein_coding	euchromatic histone methyltransferase 1
novel_NIR_11160	chr2	24803410	24809566	-	24777081	24809566	A3SS	ENSMUST00000147147.8	novel	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.17	1	5	1	5	n	0.22	2	7	2	7	y	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.25	2	6	2	6	y	ENSMUSG00000036893.18	Ehmt1	chr2	protein_coding	euchromatic histone methyltransferase 1
novel_NIR_11161	chr2	24853555	24855569	+	24852637	24855569	A5SS	ENSMUST00000153375.8	novel	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.83	5	1	5	1	y	1.00	3	0	3	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	ENSMUSG00000026975.11	Dph7	chr2	protein_coding	diphthamine biosynethesis 7
novel_NIR_11162	chr2	24853555	24855569	+	24853555	24855572	A3SS	ENSMUST00000028351.9	novel	0.12	1	7	1	7	n	0.40	4	6	4	6	y	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.22	2	7	2	7	y	0.36	5	9	5	9	y	0.43	3	4	3	4	y	0.43	6	8	6	8	y	0.00	0	5	0	5	n	0.42	5	7	5	7	y	ENSMUSG00000026975.11	Dph7	chr2	protein_coding	diphthamine biosynethesis 7
novel_NIR_11163	chr2	24853555	24855569	+	24853555	24856514	A3SS	ENSMUST00000135339.8	novel	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	ENSMUSG00000026975.11	Dph7	chr2	protein_coding	diphthamine biosynethesis 7
novel_NIR_11164	chr2	24864693	24864896	-	24864693	24864788	A5SS	ENSMUST00000194392.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000036850.5	Mrpl41	chr2	protein_coding	mitochondrial ribosomal protein L41
novel_NIR_11165	chr2	24864693	24865541	-	24864693	24864788	5pMXE	ENSMUST00000194392.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000036850.5	Mrpl41	chr2	protein_coding	mitochondrial ribosomal protein L41
novel_NIR_11166	chr2	24864693	24865766	-	24864693	24864788	5pMXE	ENSMUST00000194392.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000036850.5	Mrpl41	chr2	protein_coding	mitochondrial ribosomal protein L41
novel_NIR_11167	chr2	24866229	24868138	+	24866229	24870046	A3SS	ENSMUST00000137913.8	novel	0.00	0	8	0	8	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.17	1	5	1	5	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	0.20	1	4	1	4	n	ENSMUSG00000036833.17	Pnpla7	chr2	protein_coding	patatin-like phospholipase domain containing 7
novel_NIR_11168	chr2	24866229	24868138	+	24866325	24868138	A5SS	ENSMUST00000139031.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000036833.17	Pnpla7	chr2	protein_coding	patatin-like phospholipase domain containing 7
novel_NIR_11169	chr2	24873661	24875938	+	24873661	24877126	A3SS	ENSMUST00000137913.8	novel	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036833.17	Pnpla7	chr2	protein_coding	patatin-like phospholipase domain containing 7
novel_NIR_11170	chr2	24873665	24877126	+	24873661	24877126	A5SS	ENSMUST00000137913.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	ENSMUSG00000036833.17	Pnpla7	chr2	protein_coding	patatin-like phospholipase domain containing 7
novel_NIR_11171	chr2	24877211	24879211	+	24877211	24877616	3pMXE	ENSMUST00000142139.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000036833.17	Pnpla7	chr2	protein_coding	patatin-like phospholipase domain containing 7
novel_NIR_11172	chr2	24919668	24929615	+	24919668;24928912	24928849;24929615	ES	ENSMUST00000045295.14	novel	0.00	0	20.5	0	25;16	n	0.18	4	18.0	4	25;11	y	0.00	0	12.0	0	12;12	n	0.03	1	32.0	1	39;25	n	0.03	1	29.5	1	32;27	n	0.00	0	12.0	0	14;10	n	0.06	2	32.0	2	35;29	n	0.16	3	15.5	3	20;11	y	0.05	1	20.0	1	19;21	n	0.05	2	40.0	2	37;43	n	0.11	4	32.0	4	33;31	n	0.12	4	30.0	4	28;32	n	ENSMUSG00000036833.17	Pnpla7	chr2	protein_coding	patatin-like phospholipase domain containing 7
novel_NIR_11173	chr2	24941510	24941613	+	24940983	24941613	A5SS	ENSMUST00000045295.14	novel	0.00	0	33	0	33	n	0.05	3	55	3	55	n	0.26	9	26	9	26	y	0.00	0	37	0	37	n	0.00	0	43	0	43	n	0.14	1	6	1	6	n	0.00	0	31	0	31	n	0.21	3	11	3	11	y	0.00	0	43	0	43	n	0.02	1	51	1	51	n	0.00	0	48	0	48	n	0.09	3	29	3	29	n	ENSMUSG00000036833.17	Pnpla7	chr2	protein_coding	patatin-like phospholipase domain containing 7
novel_NIR_11174	chr2	24942649	24942872	+	24942649	24943003	A3SS	ENSMUST00000155601.2	novel	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.22	2	7	2	7	y	0.00	0	5	0	5	n	0.00	0	16	0	16	n	0.19	3	13	3	13	y	0.08	1	12	1	12	n	0.00	0	4	0	4	n	0.10	1	9	1	9	n	0.00	0	6	0	6	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	ENSMUSG00000036833.17	Pnpla7	chr2	protein_coding	patatin-like phospholipase domain containing 7
novel_NIR_11175	chr2	24942649	24943344	+	24942649	24943003	A3SS&ES	ENSMUST00000155601.2	novel	0.81	17	4	17	4	y	0.78	28	8	28	8	y	0.90	63	7	63	7	y	0.71	12	5	12	5	y	0.61	25	16	25	16	y	0.73	36	13	36	13	y	0.64	21	12	21	12	y	0.84	21	4	21	4	y	0.55	11	9	11	9	y	0.65	11	6	11	6	y	0.80	16	4	16	4	y	0.88	14	2	14	2	y	ENSMUSG00000036833.17	Pnpla7	chr2	protein_coding	patatin-like phospholipase domain containing 7
novel_NIR_11176	chr2	24947188	24947682	+	24947188	24947284	A3SS&ES	ENSMUST00000116574.10	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000006476.20	Nsmf	chr2	protein_coding	NMDA receptor synaptonuclear signaling and neuronal migration factor
novel_NIR_11177	chr2	24947188	24947682	+	24947188	24947977	A3SS	ENSMUST00000100334.11	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000006476.20	Nsmf	chr2	protein_coding	NMDA receptor synaptonuclear signaling and neuronal migration factor
novel_NIR_11178	chr2	24947188	24947682	+	24947188	24948241	A3SS	ENSMUST00000134744.3	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000006476.20	Nsmf	chr2	protein_coding	NMDA receptor synaptonuclear signaling and neuronal migration factor
novel_NIR_11179	chr2	24947188	24947682	+	24947188	24949033	A3SS	ENSMUST00000074422.14	novel	0.12	2	14	2	14	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.07	1	13	1	13	n	0.00	0	14	0	14	n	0.10	1	9	1	9	n	0.12	2	14	2	14	n	0.50	2	2	2	2	y	0.00	0	12	0	12	n	0.11	2	17	2	17	n	0.00	0	15	0	15	n	0.00	0	14	0	14	n	ENSMUSG00000006476.20	Nsmf	chr2	protein_coding	NMDA receptor synaptonuclear signaling and neuronal migration factor
novel_NIR_11180	chr2	24947188	24948274	+	24947188	24947284	A3SS&ES	ENSMUST00000116574.10	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000006476.20	Nsmf	chr2	protein_coding	NMDA receptor synaptonuclear signaling and neuronal migration factor
novel_NIR_11181	chr2	24947188	24948274	+	24947188	24947977	A3SS&ES	ENSMUST00000100334.11	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000006476.20	Nsmf	chr2	protein_coding	NMDA receptor synaptonuclear signaling and neuronal migration factor
novel_NIR_11182	chr2	24947188	24948274	+	24947188	24948241	A3SS	ENSMUST00000134744.3	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000006476.20	Nsmf	chr2	protein_coding	NMDA receptor synaptonuclear signaling and neuronal migration factor
novel_NIR_11183	chr2	24947188	24948274	+	24947188	24949033	A3SS	ENSMUST00000074422.14	novel	0.00	0	14	0	14	n	0.09	1	10	1	10	n	0.20	1	4	1	4	n	0.19	3	13	3	13	y	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.11	2	17	2	17	n	0.00	0	15	0	15	n	0.00	0	14	0	14	n	ENSMUSG00000006476.20	Nsmf	chr2	protein_coding	NMDA receptor synaptonuclear signaling and neuronal migration factor
novel_NIR_11184	chr2	24949706	24950155	+	24949706	24950491	A3SS	ENSMUST00000144520.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000006476.20	Nsmf	chr2	protein_coding	NMDA receptor synaptonuclear signaling and neuronal migration factor
novel_NIR_11185	chr2	24949706;24950269	24950155;24950491	+	24949706	24950491	cassetteExon	ENSMUST00000144520.8	novel	-	-	-	-	-	-	1.00	2.5	0	2;3	0	y	0.00	0.0	1	0;0	1	n	1.00	0.5	0	1;0	0	n	-	-	-	-	-	-	1.00	0.5	0	1;0	0	n	1.00	1.5	0	3;0	0	n	1.00	0.5	0	1;0	0	n	1.00	0.5	0	0;1	0	n	1.00	2.0	0	2;2	0	y	1.00	1.5	0	0;3	0	n	-	-	-	-	-	-	ENSMUSG00000006476.20	Nsmf	chr2	protein_coding	NMDA receptor synaptonuclear signaling and neuronal migration factor
novel_NIR_11186	chr2	24949718	24950151	+	24949085	24950151	A5SS	ENSMUST00000114388.8	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.22	2	7	2	7	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	ENSMUSG00000006476.20	Nsmf	chr2	protein_coding	NMDA receptor synaptonuclear signaling and neuronal migration factor
novel_NIR_11187	chr2	24950269	24950491	+	24949706	24950491	A5SS	ENSMUST00000144520.8	novel	-	-	-	-	-	-	1.00	3	0	3	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000006476.20	Nsmf	chr2	protein_coding	NMDA receptor synaptonuclear signaling and neuronal migration factor
novel_NIR_11188	chr2	24970238	24971818	+	24970563	24971818	5pMXE	ENSMUST00000135004.2	novel	0.00	0	82	0	82	n	0.01	1	98	1	98	n	0.24	4	13	4	13	y	0.05	6	112	6	112	n	0.01	1	118	1	118	n	0.00	0	32	0	32	n	0.00	0	106	0	106	n	0.03	2	59	2	59	n	0.01	1	88	1	88	n	0.05	7	127	7	127	n	0.00	0	117	0	117	n	0.00	0	76	0	76	n	ENSMUSG00000036813.12	Entpd8	chr2	protein_coding	ectonucleoside triphosphate diphosphohydrolase 8
novel_NIR_11189	chr2	24970377	24972978	+	24972162	24972978	5pMXE	ENSMUST00000150625.4	novel	0.50	2	2	2	2	y	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	ENSMUSG00000036813.12	Entpd8	chr2	protein_coding	ectonucleoside triphosphate diphosphohydrolase 8
novel_NIR_11190	chr2	24970563	24971701	+	24970563	24971823	A3SS	ENSMUST00000044078.10	novel	0.00	0	8	0	8	n	0.00	0	9	0	9	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	9	0	9	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000036813.12	Entpd8	chr2	protein_coding	ectonucleoside triphosphate diphosphohydrolase 8
novel_NIR_11191	chr2	24970563	24971701	+	24970563	24973232	A3SS	ENSMUST00000152326.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.67	4	2	4	2	y	0.25	1	3	1	3	n	0.50	1	1	1	1	n	ENSMUSG00000036813.12	Entpd8	chr2	protein_coding	ectonucleoside triphosphate diphosphohydrolase 8
novel_NIR_11192	chr2	24970563	24971852	+	24970563	24971823	A3SS	ENSMUST00000044078.10	novel	0.00	0	8	0	8	n	0.00	0	9	0	9	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	9	0	9	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000036813.12	Entpd8	chr2	protein_coding	ectonucleoside triphosphate diphosphohydrolase 8
novel_NIR_11193	chr2	24970563	24971852	+	24970563	24973232	A3SS	ENSMUST00000152326.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.40	2	3	2	3	n	0.00	0	1	0	1	n	ENSMUSG00000036813.12	Entpd8	chr2	protein_coding	ectonucleoside triphosphate diphosphohydrolase 8
novel_NIR_11194	chr2	24970563	24971952	+	24970563	24971823	A3SS	ENSMUST00000044078.10	novel	0.00	0	8	0	8	n	0.10	1	9	1	9	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	9	0	9	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036813.12	Entpd8	chr2	protein_coding	ectonucleoside triphosphate diphosphohydrolase 8
novel_NIR_11195	chr2	24970563	24971952	+	24970563	24973232	A3SS	ENSMUST00000152326.8	novel	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	4	0	4	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000036813.12	Entpd8	chr2	protein_coding	ectonucleoside triphosphate diphosphohydrolase 8
novel_NIR_11196	chr2	24970563	24972849	+	24970563	24971823	A3SS&ES	ENSMUST00000044078.10	novel	0.27	3	8	3	8	y	0.00	0	9	0	9	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	0.25	3	9	3	9	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000036813.12	Entpd8	chr2	protein_coding	ectonucleoside triphosphate diphosphohydrolase 8
novel_NIR_11197	chr2	24970563	24972849	+	24970563	24973232	A3SS	ENSMUST00000152326.8	novel	0.60	3	2	3	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	1.00	2	0	2	0	y	0.00	0	1	0	1	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.00	0	1	0	1	n	ENSMUSG00000036813.12	Entpd8	chr2	protein_coding	ectonucleoside triphosphate diphosphohydrolase 8
novel_NIR_11198	chr2	24970563	24972925	+	24970563	24971823	A3SS&ES	ENSMUST00000044078.10	novel	0.00	0	8	0	8	n	0.00	0	9	0	9	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	9	0	9	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036813.12	Entpd8	chr2	protein_coding	ectonucleoside triphosphate diphosphohydrolase 8
novel_NIR_11199	chr2	24970563	24972925	+	24970563	24973232	A3SS	ENSMUST00000152326.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000036813.12	Entpd8	chr2	protein_coding	ectonucleoside triphosphate diphosphohydrolase 8
novel_NIR_11200	chr2	24970563	24972940	+	24970563	24973232	A3SS	ENSMUST00000152326.8	novel	0.71	5	2	5	2	y	1.00	3	0	3	0	y	-	-	-	-	-	-	0.80	8	2	8	2	y	1.00	3	0	3	0	y	0.50	1	1	1	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	0.71	5	2	5	2	y	0.40	2	3	2	3	y	0.80	4	1	4	1	y	ENSMUSG00000036813.12	Entpd8	chr2	protein_coding	ectonucleoside triphosphate diphosphohydrolase 8
novel_NIR_11201	chr2	24970563	24973510	+	24970563	24973232	A3SS	ENSMUST00000152326.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.00	0	1	0	1	n	ENSMUSG00000036813.12	Entpd8	chr2	protein_coding	ectonucleoside triphosphate diphosphohydrolase 8
novel_NIR_11202	chr2	24972162	24972849	+	24972162	24972978	A3SS	ENSMUST00000150625.4	novel	0.00	0	2	0	2	n	0.33	3	6	3	6	y	1.00	1	0	1	0	n	0.60	3	2	3	2	y	0.00	0	9	0	9	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.28	5	13	5	13	y	0.00	0	6	0	6	n	0.00	0	4	0	4	n	ENSMUSG00000036813.12	Entpd8	chr2	protein_coding	ectonucleoside triphosphate diphosphohydrolase 8
novel_NIR_11203	chr2	24972162	24972925	+	24972162	24972978	A3SS	ENSMUST00000150625.4	novel	0.00	0	2	0	2	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.20	2	8	2	8	y	0.13	2	13	2	13	n	0.14	1	6	1	6	n	0.33	2	4	2	4	y	ENSMUSG00000036813.12	Entpd8	chr2	protein_coding	ectonucleoside triphosphate diphosphohydrolase 8
novel_NIR_11204	chr2	24973391	24973525	+	24973391	24973680	A3SS	ENSMUST00000150625.4	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	4	0	4	0	y	-	-	-	-	-	-	ENSMUSG00000036813.12	Entpd8	chr2	protein_coding	ectonucleoside triphosphate diphosphohydrolase 8
novel_NIR_11205	chr2	24973742	24973837	+	24973742	24973842	A3SS	ENSMUST00000149470.2	novel	0.75	41	14	41	14	y	0.84	51	10	51	10	y	1.00	14	0	14	0	y	0.77	47	14	47	14	y	0.91	61	6	61	6	y	0.81	25	6	25	6	y	0.81	47	11	47	11	y	0.78	32	9	32	9	y	0.81	48	11	48	11	y	0.78	50	14	50	14	y	0.82	65	14	65	14	y	0.79	45	12	45	12	y	ENSMUSG00000036813.12	Entpd8	chr2	protein_coding	ectonucleoside triphosphate diphosphohydrolase 8
novel_NIR_11206	chr2	24973742	24973837	+	24973746	24973837	A5SS	ENSMUST00000044078.10	novel	0.20	41	163	41	163	y	0.26	51	143	51	143	y	0.22	14	49	14	49	y	0.21	47	176	47	176	y	0.22	61	216	61	216	y	0.29	25	60	25	60	y	0.18	47	220	47	220	y	0.26	32	93	32	93	y	0.21	48	183	48	183	y	0.19	50	218	50	218	y	0.26	65	186	65	186	y	0.22	45	157	45	157	y	ENSMUSG00000036813.12	Entpd8	chr2	protein_coding	ectonucleoside triphosphate diphosphohydrolase 8
novel_NIR_11207	chr2	24973746	24973842	+	24973742	24973842	A5SS	ENSMUST00000149470.2	novel	0.00	0	14	0	14	n	0.33	5	10	5	10	y	-	-	-	-	-	-	0.18	3	14	3	14	y	0.33	3	6	3	6	y	0.00	0	6	0	6	n	0.08	1	11	1	11	n	0.10	1	9	1	9	n	0.21	3	11	3	11	y	0.00	0	14	0	14	n	0.07	1	14	1	14	n	0.08	1	12	1	12	n	ENSMUSG00000036813.12	Entpd8	chr2	protein_coding	ectonucleoside triphosphate diphosphohydrolase 8
novel_NIR_11208	chr2	24974100	24974323	+	24974100	24974273	A3SS	ENSMUST00000044078.10	novel	0.15	27	159	27	159	y	0.14	32	201	32	201	n	0.19	10	44	10	44	y	0.09	25	243	25	243	n	0.12	32	234	32	234	n	0.11	9	73	9	73	n	0.10	26	234	26	234	n	0.07	8	103	8	103	n	0.14	29	176	29	176	n	0.13	40	269	40	269	n	0.10	22	205	22	205	n	0.13	28	192	28	192	n	ENSMUSG00000036813.12	Entpd8	chr2	protein_coding	ectonucleoside triphosphate diphosphohydrolase 8
novel_NIR_11209	chr2	24974100	24974323	+	24974100	24974738	A3SS	ENSMUST00000114376.7	novel	0.96	27	1	27	1	y	0.91	32	3	32	3	y	1.00	10	0	10	0	y	0.83	25	5	25	5	y	0.97	32	1	32	1	y	1.00	9	0	9	0	y	0.96	26	1	26	1	y	0.89	8	1	8	1	y	1.00	29	0	29	0	y	1.00	40	0	40	0	y	0.92	22	2	22	2	y	0.97	28	1	28	1	y	ENSMUSG00000036813.12	Entpd8	chr2	protein_coding	ectonucleoside triphosphate diphosphohydrolase 8
novel_NIR_11210	chr2	25135824	25136344	-	25136161	25136344	A3SS	ENSMUST00000228052.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.67	4	2	4	2	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000115074.2	Ndor1	chr2	protein_coding	NADPH dependent diflavin oxidoreductase 1
novel_NIR_11211	chr2	25136246	25136344	-	25136161	25136344	A3SS	ENSMUST00000228052.2	novel	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	7	0	7	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000115074.2	Ndor1	chr2	protein_coding	NADPH dependent diflavin oxidoreductase 1
novel_NIR_11212	chr2	25136522	25137972	-	25137866	25137972	A3SS	ENSMUST00000100329.10	novel	0.00	0	20	0	20	n	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.22	2	7	2	7	y	0.00	0	32	0	32	n	0.00	0	11	0	11	n	0.00	0	18	0	18	n	0.00	0	18	0	18	n	0.00	0	18	0	18	n	0.06	1	17	1	17	n	ENSMUSG00000006471.19	Ndor1	chr2	protein_coding	NADPH dependent diflavin oxidoreductase 1
novel_NIR_11213	chr2	25136607	25136692	-	25136607	25138134	A5SS	ENSMUST00000228052.2	novel	0.50	2	2	2	2	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.67	4	2	4	2	n	ENSMUSG00000115074.2	Ndor1	chr2	protein_coding	NADPH dependent diflavin oxidoreductase 1
novel_NIR_11214	chr2	25138494	25138644	-	25138497	25138644	A3SS	ENSMUST00000100329.10	novel	0.00	0	29	0	29	n	0.00	0	21	0	21	n	0.00	0	30	0	30	n	0.18	4	18	4	18	y	0.00	0	20	0	20	n	0.04	1	25	1	25	n	0.05	1	21	1	21	n	0.00	0	24	0	24	n	0.06	1	16	1	16	n	0.10	3	28	3	28	n	0.00	0	21	0	21	n	0.03	1	28	1	28	n	ENSMUSG00000006471.19	Ndor1	chr2	protein_coding	NADPH dependent diflavin oxidoreductase 1
novel_NIR_11215	chr2	25138747	25138917	-	25138758	25138917	A3SS	ENSMUST00000100329.10	novel	0.06	1	15	1	15	n	0.11	4	33	4	33	n	0.07	2	27	2	27	n	0.00	0	19	0	19	n	0.00	0	25	0	25	n	0.00	0	30	0	30	n	0.09	2	21	2	21	n	0.00	0	16	0	16	n	0.00	0	15	0	15	n	0.00	0	25	0	25	n	0.00	0	27	0	27	n	0.18	4	18	4	18	y	ENSMUSG00000006471.19	Ndor1	chr2	protein_coding	NADPH dependent diflavin oxidoreductase 1
novel_NIR_11216	chr2	25162140	25162312	-	25162140	25162321	A5SS	ENSMUST00000133697.2	novel	0.21	3	11	3	11	y	0.12	1	7	1	7	n	0.06	1	16	1	16	n	0.06	1	17	1	17	n	0.14	3	18	3	18	n	0.00	0	8	0	8	n	0.06	1	15	1	15	n	0.00	0	9	0	9	n	0.09	1	10	1	10	n	0.10	1	9	1	9	n	0.05	1	21	1	21	n	0.00	0	7	0	7	n	ENSMUSG00000026966.7	Ssna1	chr2	protein_coding	SS nuclear autoantigen 1
novel_NIR_11217	chr2	25322101	25322396	+	25322101	25323110	A3SS	ENSMUST00000102919.4	novel	0.18	2	9	2	9	y	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.06	1	17	1	17	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.11	1	8	1	8	n	0.20	1	4	1	4	n	0.00	0	9	0	9	n	0.18	2	9	2	9	y	ENSMUSG00000026944.19	Abca2	chr2	protein_coding	ATP-binding cassette, sub-family A (ABC1), member 2
novel_NIR_11218	chr2	25349713	25350021	-	25345660	25350021	A3SS	ENSMUST00000132596.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000047617.12	Paxx	chr2	protein_coding	non-homologous end joining factor
novel_NIR_11219	chr2	25349713	25350021	-	25349927	25350021	A3SS&ES	ENSMUST00000133919.8	novel	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.17	2	10	2	10	y	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.00	0	21	0	21	n	0.00	0	8	0	8	n	ENSMUSG00000047617.12	Paxx	chr2	protein_coding	non-homologous end joining factor
novel_NIR_11220	chr2	25350127	25350457	-	25350369	25350457	A3SS&ES	ENSMUST00000133919.8	novel	0.00	0	51	0	51	n	0.00	0	47	0	47	n	0.00	0	32	0	32	n	0.00	0	36	0	36	n	0.00	0	50	0	50	n	0.00	0	20	0	20	n	0.00	0	27	0	27	n	0.17	4	20	4	20	y	0.00	0	52	0	52	n	0.00	0	60	0	60	n	0.00	0	102	0	102	n	0.00	0	40	0	40	n	ENSMUSG00000047617.12	Paxx	chr2	protein_coding	non-homologous end joining factor
novel_NIR_11221	chr2	25383370	25389026	-	25383370	25383755	5pMXE	ENSMUST00000028312.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	ENSMUSG00000026943.13	Lcn12	chr2	protein_coding	lipocalin 12
novel_NIR_11222	chr2	25383370	25389026	-	25388723	25389026	3pMXE	ENSMUST00000153139.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000015083.12	C8g	chr2	protein_coding	complement component 8, gamma polypeptide
novel_NIR_11223	chr2	25388835	25389026	-	25388723	25389026	A3SS	ENSMUST00000153139.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	7	0	7	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	4	0	4	0	y	1.00	8	0	8	0	y	1.00	6	0	6	0	y	1.00	6	0	6	0	y	1.00	9	0	9	0	y	1.00	2	0	2	0	y	1.00	7	0	7	0	y	ENSMUSG00000015083.12	C8g	chr2	protein_coding	complement component 8, gamma polypeptide
novel_NIR_11224	chr2	25389523	25389601	-	25389127	25389601	A3SS	ENSMUST00000153139.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000015083.12	C8g	chr2	protein_coding	complement component 8, gamma polypeptide
novel_NIR_11225	chr2	25389987	25390127	-	25389987	25391540	A5SS	ENSMUST00000015227.4	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000015083.12	C8g	chr2	protein_coding	complement component 8, gamma polypeptide
novel_NIR_11226	chr2	25390898	25392006	+	25390898	25392044	A3SS	ENSMUST00000124258.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	4	2	4	2	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000015095.13	Fbxw5	chr2	protein_coding	F-box and WD-40 domain protein 5
novel_NIR_11227	chr2	25393057	25393203	+	25393057	25393449	A3SS	ENSMUST00000135511.2	novel	0.40	2	3	2	3	y	1.00	1	0	1	0	n	0.50	2	2	2	2	y	0.50	1	1	1	1	n	-	-	-	-	-	-	0.40	2	3	2	3	y	1.00	3	0	3	0	y	1.00	6	0	6	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000015095.13	Fbxw5	chr2	protein_coding	F-box and WD-40 domain protein 5
novel_NIR_11228	chr2	25449502	25450163	+	25448178	25450163	A5SS	ENSMUST00000144395.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	7	0	7	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	ENSMUSG00000015092.10	Edf1	chr2	protein_coding	endothelial differentiation-related factor 1
novel_NIR_11229	chr2	25454491	25454617	-	25454491	25454588	A5SS	ENSMUST00000095117.10	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	4	0	4	n	ENSMUSG00000026941.17	Mamdc4	chr2	protein_coding	MAM domain containing 4
novel_NIR_11230	chr2	25463711	25464695	-	25463711;25464461	25464200;25464695	ES	ENSMUST00000147096.2	novel	0.12	8	57.5	8	115;0	n	0.11	10	82.5	10	165;0	n	0.15	10	57.5	10	106;9	y	0.13	7	46.5	7	93;0	n	0.09	6	58.5	6	107;10	n	0.09	4	40.0	4	74;6	n	0.07	7	88.5	7	168;9	n	0.06	3	43.5	3	87;0	n	0.23	15	50.5	15	91;10	y	0.04	4	95.5	4	173;18	n	0.09	7	73.5	7	141;6	n	0.10	8	74.5	8	143;6	n	ENSMUSG00000036504.7	Phpt1	chr2	protein_coding	phosphohistidine phosphatase 1
novel_NIR_11231	chr2	25511185	25511321	-	25511185	25511373	A5SS	ENSMUST00000128149.2	novel	0.11	1	8	1	8	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.06	1	16	1	16	n	0.00	0	2	0	2	n	0.00	0	14	0	14	n	0.00	0	15	0	15	n	0.36	4	7	4	7	y	0.00	0	11	0	11	n	0.00	0	22	0	22	n	0.00	0	10	0	10	n	ENSMUSG00000026939.13	Tmem141	chr2	protein_coding	transmembrane protein 141
novel_NIR_11232	chr2	25511185	25511321	-	25511185	25511620	A5SS	ENSMUST00000132348.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026939.13	Tmem141	chr2	protein_coding	transmembrane protein 141
novel_NIR_11233	chr2	25511543	25511620	-	25511185	25511620	A3SS	ENSMUST00000132348.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026939.13	Tmem141	chr2	protein_coding	transmembrane protein 141
novel_NIR_11234	chr2	25511543	25511620	-	25511540	25511620	A3SS	ENSMUST00000155893.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.29	2	5	2	5	y	0.00	0	5	0	5	n	0.00	0	9	0	9	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000026939.13	Tmem141	chr2	protein_coding	transmembrane protein 141
novel_NIR_11235	chr2	25511767	25511946	-	25511470	25511946	A3SS	ENSMUST00000136952.2	novel	-	-	-	-	-	-	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000026939.13	Tmem141	chr2	protein_coding	transmembrane protein 141
novel_NIR_11236	chr2	25511767	25511946	-	25511686	25511946	A3SS	ENSMUST00000028308.11	novel	0.00	0	36	0	36	n	0.18	7	31	7	31	y	0.00	0	15	0	15	n	0.00	0	33	0	33	n	0.14	4	24	4	24	n	0.04	1	24	1	24	n	0.14	6	38	6	38	n	0.00	0	12	0	12	n	0.06	2	30	2	30	n	0.07	3	41	3	41	n	0.00	0	36	0	36	n	0.09	3	31	3	31	n	ENSMUSG00000026939.13	Tmem141	chr2	protein_coding	transmembrane protein 141
novel_NIR_11237	chr2	25856960	25862940	-	25856960	25872794	A5SS	ENSMUST00000114167.9	novel	0.17	1	5	1	5	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.33	2	4	2	4	y	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	ENSMUSG00000026933.18	Camsap1	chr2	protein_coding	calmodulin regulated spectrin-associated protein 1
novel_NIR_11238	chr2	25856960	25862940	-	25856960	25873035	A5SS	ENSMUST00000127823.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026933.18	Camsap1	chr2	protein_coding	calmodulin regulated spectrin-associated protein 1
novel_NIR_11239	chr2	25889079	25891403	-	25889079	25896539	A5SS	ENSMUST00000123275.8	novel	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	ENSMUSG00000036352.17	Ubac1	chr2	protein_coding	ubiquitin associated domain containing 1
novel_NIR_11240	chr2	25897965	25898683	-	25897965	25899173	A5SS	ENSMUST00000154336.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000036352.17	Ubac1	chr2	protein_coding	ubiquitin associated domain containing 1
novel_NIR_11241	chr2	26100972	26101286	-	26099805	26101286	A3SS	ENSMUST00000036187.9	novel	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.20	3	12	3	12	y	0.00	0	1	0	1	n	0.14	1	6	1	6	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000036327.19	Qsox2	chr2	protein_coding	quiescin Q6 sulfhydryl oxidase 2
novel_NIR_11242	chr2	26241490	26241785	-	26240570	26241785	A3SS	ENSMUST00000125848.2	novel	0.71	27	11	27	11	y	0.76	32	10	32	10	y	0.68	21	10	21	10	y	0.68	26	12	26	12	y	0.64	35	20	35	20	y	0.89	16	2	16	2	y	0.84	46	9	46	9	y	0.89	17	2	17	2	y	0.66	31	16	31	16	y	0.59	17	12	17	12	y	0.85	34	6	34	6	n	0.67	24	12	24	12	y	ENSMUSG00000075467.5	Dnlz	chr2	protein_coding	DNL-type zinc finger
novel_NIR_11243	chr2	26241490	26241785	-	26241486	26241785	A3SS	ENSMUST00000028295.9	novel	0.21	27	99	27	99	y	0.27	32	85	32	85	y	0.22	21	73	21	73	y	0.25	26	80	26	80	y	0.28	35	89	35	89	y	0.20	16	64	16	64	y	0.27	46	122	46	122	y	0.26	17	48	17	48	y	0.37	31	53	31	53	y	0.17	17	84	17	84	y	0.23	34	115	34	115	y	0.24	24	75	24	75	y	ENSMUSG00000075467.5	Dnlz	chr2	protein_coding	DNL-type zinc finger
novel_NIR_11244	chr2	26257122	26257203	-	26256448	26257203	A3SS	ENSMUST00000114115.9	novel	0.08	1	12	1	12	n	0.08	1	11	1	11	n	0.08	1	12	1	12	n	0.08	1	11	1	11	n	0.12	2	15	2	15	n	0.08	1	12	1	12	n	0.17	2	10	2	10	y	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	20	0	20	n	0.12	2	15	2	15	n	0.00	0	9	0	9	n	ENSMUSG00000036281.14	Snapc4	chr2	protein_coding	small nuclear RNA activating complex, polypeptide 4
novel_NIR_11245	chr2	26257322	26257747	-	26257313	26257747	A3SS	ENSMUST00000114115.9	novel	0.00	0	21	0	21	n	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.25	5	15	5	15	y	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	ENSMUSG00000036281.14	Snapc4	chr2	protein_coding	small nuclear RNA activating complex, polypeptide 4
novel_NIR_11246	chr2	26263478	26263654	-	26263478	26264033	A5SS	ENSMUST00000114115.9	novel	0.50	2	2	2	2	y	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	ENSMUSG00000036281.14	Snapc4	chr2	protein_coding	small nuclear RNA activating complex, polypeptide 4
novel_NIR_11247	chr2	26266733	26266881	-	26266737	26266881	A3SS	ENSMUST00000114115.9	novel	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.24	4	13	4	13	y	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.09	1	10	1	10	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.14	1	6	1	6	n	0.00	0	7	0	7	n	0.33	1	2	1	2	n	0.00	0	11	0	11	n	ENSMUSG00000036281.14	Snapc4	chr2	protein_coding	small nuclear RNA activating complex, polypeptide 4
novel_NIR_11248	chr2	26268644	26270561	-	26268648	26270561	A3SS	ENSMUST00000114115.9	novel	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.33	2	4	2	4	y	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.00	0	6	0	6	n	ENSMUSG00000036281.14	Snapc4	chr2	protein_coding	small nuclear RNA activating complex, polypeptide 4
novel_NIR_11249	chr2	26286922	26288568	-	26286909	26288568	A3SS	ENSMUST00000131109.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000026925.17	Inpp5e	chr2	protein_coding	inositol polyphosphate-5-phosphatase E
novel_NIR_11250	chr2	26286922	26288568	-	26287936	26288568	3pMXE	ENSMUST00000114090.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026925.17	Inpp5e	chr2	protein_coding	inositol polyphosphate-5-phosphatase E
novel_NIR_11251	chr2	26306237	26306383	-	26306269	26306383	A3SS	ENSMUST00000148306.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.86	6	1	6	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000026924.18	Sec16a	chr2	protein_coding	SEC16 homolog A, endoplasmic reticulum export factor
novel_NIR_11252	chr2	26332082	26336053	-	26332082	26334890	5pMXE	ENSMUST00000155252.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	5	0	5	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026924.18	Sec16a	chr2	protein_coding	SEC16 homolog A, endoplasmic reticulum export factor
novel_NIR_11253	chr2	26332082	26336053	-	26332082	26335087	5pMXE	ENSMUST00000114082.9	novel	0.00	0	13	0	13	n	0.29	2	5	2	5	y	0.14	5	32	5	32	n	0.23	5	17	5	17	y	0.02	1	43	1	43	n	0.00	0	28	0	28	n	0.18	2	9	2	9	y	0.04	2	51	2	51	n	0.06	1	17	1	17	n	0.17	5	24	5	24	y	0.00	0	9	0	9	n	0.00	0	17	0	17	n	ENSMUSG00000026924.18	Sec16a	chr2	protein_coding	SEC16 homolog A, endoplasmic reticulum export factor
novel_NIR_11254	chr2	26347792	26348428	+	26347792	26349234	A3SS	ENSMUST00000139144.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000086714.2	0610009E02Rik	chr2	lncRNA	RIKEN cDNA 0610009E02 gene
novel_NIR_11255	chr2	26347792	26348428	+	26347824	26348428	A5SS	ENSMUST00000133463.2	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000086714.2	0610009E02Rik	chr2	lncRNA	RIKEN cDNA 0610009E02 gene
novel_NIR_11256	chr2	26355162	26355332	-	26355162	26355362	A5SS	ENSMUST00000028288.5	novel	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.25	3	9	3	9	y	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	ENSMUSG00000026923.16	Notch1	chr2	protein_coding	notch 1
novel_NIR_11257	chr2	26371705	26372124	-	26371705	26374280	A5SS	ENSMUST00000028288.5	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000026923.16	Notch1	chr2	protein_coding	notch 1
novel_NIR_11258	chr2	26476693	26479096	+	26476693	26479057	A3SS	ENSMUST00000239075.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000026921.21	Egfl7	chr2	protein_coding	EGF-like domain 7
novel_NIR_11259	chr2	26481075	26481577	+	26481075	26482130	A3SS	ENSMUST00000131112.2	novel	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	15	0	15	n	-	-	-	-	-	-	0.14	1	6	1	6	n	0.00	0	2	0	2	n	0.14	1	6	1	6	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.33	1	2	1	2	n	ENSMUSG00000026921.21	Egfl7	chr2	protein_coding	EGF-like domain 7
novel_NIR_11260	chr2	26484864	26486303	-	26486188	26486303	3pMXE	ENSMUST00000140508.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026922.14	Agpat2	chr2	protein_coding	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)
novel_NIR_11261	chr2	26487349	26491400	-	26487349	26493661	A5SS	ENSMUST00000154753.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000026922.14	Agpat2	chr2	protein_coding	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)
novel_NIR_11262	chr2	26487349	26491400	-	26487349	26493674	A5SS	ENSMUST00000140508.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026922.14	Agpat2	chr2	protein_coding	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)
novel_NIR_11263	chr2	26487349	26491407	-	26487349	26493661	A5SS	ENSMUST00000154753.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000026922.14	Agpat2	chr2	protein_coding	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)
novel_NIR_11264	chr2	26487349	26491407	-	26487349	26493674	A5SS	ENSMUST00000140508.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026922.14	Agpat2	chr2	protein_coding	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)
novel_NIR_11265	chr2	26487349	26493177	-	26487349	26493661	A5SS	ENSMUST00000154753.2	novel	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000026922.14	Agpat2	chr2	protein_coding	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)
novel_NIR_11266	chr2	26487349	26493177	-	26487349	26493674	A5SS	ENSMUST00000140508.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026922.14	Agpat2	chr2	protein_coding	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)
novel_NIR_11267	chr2	26779390	26789349	-	26779390	26781987	5pMXE	ENSMUST00000129554.2	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000036160.14	Surf6	chr2	protein_coding	surfeit gene 6
novel_NIR_11268	chr2	26779390	26789349	-	26779390	26782003	5pMXE	ENSMUST00000140392.2	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.75	3	1	3	1	y	-	-	-	-	-	-	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000036160.14	Surf6	chr2	protein_coding	surfeit gene 6
novel_NIR_11269	chr2	26779390	26789349	-	26779390;26783079	26782879;26789349	ES	ENSMUST00000137904.8	novel	0.19	4	17.0	4	0;34	y	0.00	0	13.0	0	0;26	n	0.00	0	25.5	0	0;51	n	0.06	1	16.5	1	0;33	n	0.00	0	20.0	0	1;39	n	0.00	0	14.5	0	2;27	n	0.00	0	21.5	0	0;43	n	0.16	3	15.5	3	0;31	y	0.00	0	17.5	0	1;34	n	0.09	2	20.5	2	0;41	n	0.00	0	11.5	0	0;23	n	0.00	0	20.5	0	0;41	n	ENSMUSG00000036160.14	Surf6	chr2	protein_coding	surfeit gene 6
novel_NIR_11270	chr2	26795964	26798105	-	26796005	26798105	A3SS	ENSMUST00000015920.12	novel	0.00	0	3	0	3	n	0.33	2	4	2	4	y	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	12	0	12	n	0.40	4	6	4	6	y	0.00	0	5	0	5	n	ENSMUSG00000015776.13	Med22	chr2	protein_coding	mediator complex subunit 22
novel_NIR_11271	chr2	26807543	26808943	+	26807543	26808877	A3SS	ENSMUST00000157066.8	novel	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	ENSMUSG00000014873.16	Surf2	chr2	protein_coding	surfeit gene 2
novel_NIR_11272	chr2	26807543	26808943	+	26807543	26808941	A3SS	ENSMUST00000143098.2	novel	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.29	2	5	2	5	y	0.00	0	10	0	10	n	0.00	0	18	0	18	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.14	1	6	1	6	n	ENSMUSG00000014873.16	Surf2	chr2	protein_coding	surfeit gene 2
novel_NIR_11273	chr2	26809370	26809742	+	26809370	26809615	A3SS	ENSMUST00000135506.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.83	5	1	5	1	y	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.43	3	4	3	4	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	3	3	3	3	y	1.00	2	0	2	0	y	ENSMUSG00000014873.16	Surf2	chr2	protein_coding	surfeit gene 2
novel_NIR_11274	chr2	26809370	26809742	+	26809370	26809745	A3SS	ENSMUST00000143098.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	5	0	5	0	y	-	-	-	-	-	-	0.33	2	4	2	4	y	0.00	0	4	0	4	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	1.00	3	0	3	0	y	1.00	2	0	2	0	y	ENSMUSG00000014873.16	Surf2	chr2	protein_coding	surfeit gene 2
novel_NIR_11275	chr2	26816967	26818784	-	26816967	26823714	A5SS	ENSMUST00000154651.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000014867.10	Surf4	chr2	protein_coding	surfeit gene 4
novel_NIR_11276	chr2	26816967	26822924	-	26816967	26823714	A5SS	ENSMUST00000154651.2	novel	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000014867.10	Surf4	chr2	protein_coding	surfeit gene 4
novel_NIR_11277	chr2	26846375	26847616	-	26846375	26850615	A5SS	ENSMUST00000135752.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000052406.15	Rexo4	chr2	protein_coding	REX4, 3'-5' exonuclease
novel_NIR_11278	chr2	26848579	26850615	-	26846375	26850615	A3SS	ENSMUST00000135752.2	novel	1.00	3	0	3	0	y	1.00	9	0	9	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	4	0	4	0	y	1.00	5	0	5	0	y	1.00	4	0	4	0	y	1.00	5	0	5	0	y	1.00	5	0	5	0	y	1.00	5	0	5	0	y	1.00	5	0	5	0	y	0.67	2	1	2	1	n	ENSMUSG00000052406.15	Rexo4	chr2	protein_coding	REX4, 3'-5' exonuclease
novel_NIR_11279	chr2	26848579	26850615	-	26848579	26850236	5pMXE	ENSMUST00000128130.2	novel	0.06	3	46	3	46	n	0.17	9	44	9	44	y	0.04	2	45	2	45	n	0.10	5	44	5	44	n	0.05	4	75	4	75	n	0.12	5	38	5	38	n	0.06	4	59	4	59	n	0.11	5	41	5	41	n	0.10	5	46	5	46	n	0.06	5	77	5	77	n	0.08	5	61	5	61	n	0.03	2	67	2	67	n	ENSMUSG00000052406.15	Rexo4	chr2	protein_coding	REX4, 3'-5' exonuclease
novel_NIR_11280	chr2	26848579	26850615	-	26848579;26850429	26850236;26850615	ES	ENSMUST00000064244.11	novel	0.06	3	45.5	3	46;45	n	0.20	9	36.5	9	44;29	y	0.04	2	51.0	2	45;57	n	0.09	5	50.0	5	44;56	n	0.05	4	75.0	4	75;75	n	0.13	5	34.5	5	38;31	n	0.06	4	60.0	4	59;61	n	0.11	5	38.5	5	41;36	n	0.10	5	43.5	5	46;41	n	0.07	5	71.0	5	77;65	n	0.09	5	51.5	5	61;42	n	0.04	2	51.5	2	67;36	n	ENSMUSG00000052406.15	Rexo4	chr2	protein_coding	REX4, 3'-5' exonuclease
novel_NIR_11281	chr2	26852530	26854064	-	26852735	26854064	A3SS	ENSMUST00000064244.11	novel	0.17	6	29	6	29	y	0.00	0	32	0	32	n	0.00	0	58	0	58	n	0.03	1	35	1	35	n	0.00	0	60	0	60	n	0.00	0	30	0	30	n	0.00	0	54	0	54	n	0.00	0	27	0	27	n	0.00	0	40	0	40	n	0.02	1	50	1	50	n	0.00	0	46	0	46	n	0.00	0	53	0	53	n	ENSMUSG00000052406.15	Rexo4	chr2	protein_coding	REX4, 3'-5' exonuclease
novel_NIR_11282	chr2	26852530	26854064	-	26852996	26854064	3pMXE	ENSMUST00000128401.2	novel	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000052406.15	Rexo4	chr2	protein_coding	REX4, 3'-5' exonuclease
novel_NIR_11283	chr2	26875561	26877001	+	26875561;26876686	26876538;26877001	ES	ENSMUST00000014996.14	novel	0.00	0	2.5	0	2;3	n	0.00	0	3.0	0	3;3	n	-	-	-	-	-	-	0.00	0	6.0	0	6;6	n	0.00	0	5.5	0	5;6	n	0.00	0	1.0	0	2;0	n	0.21	2	7.5	2	8;7	y	0.00	0	2.5	0	4;1	n	0.00	0	2.0	0	1;3	n	0.00	0	4.0	0	4;4	n	0.00	0	7.0	0	2;12	n	0.00	0	4.5	0	5;4	n	ENSMUSG00000014852.17	Adamts13	chr2	protein_coding	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13
novel_NIR_11284	chr2	26877121	26878412	+	26877121	26878351	A3SS	ENSMUST00000014996.14	novel	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.75	3	1	3	1	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	ENSMUSG00000014852.17	Adamts13	chr2	protein_coding	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13
novel_NIR_11285	chr2	26991745	26992777	+	26991745	26992781	A3SS	ENSMUST00000091233.7	novel	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.18	2	9	2	9	y	0.00	0	16	0	16	n	0.12	1	7	1	7	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.00	0	10	0	10	n	ENSMUSG00000036040.15	Adamtsl2	chr2	protein_coding	ADAMTS-like 2
novel_NIR_11286	chr2	27087703	27101044	-	27087703	27099911	5pMXE	ENSMUST00000156434.9	novel	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	ENSMUSG00000009614.17	Sardh	chr2	protein_coding	sarcosine dehydrogenase
novel_NIR_11287	chr2	27108914	27110655	-	27105197	27110655	A3SS	ENSMUST00000091224.11	novel	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	16	0	16	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.50	5	5	5	5	y	0.36	5	9	5	9	y	0.00	0	15	0	15	n	0.00	0	14	0	14	n	0.00	0	12	0	12	n	ENSMUSG00000009614.17	Sardh	chr2	protein_coding	sarcosine dehydrogenase
novel_NIR_11288	chr2	27136714	27136984	-	27136714	27136811	5pMXE	ENSMUST00000149733.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	ENSMUSG00000009614.17	Sardh	chr2	protein_coding	sarcosine dehydrogenase
novel_NIR_11289	chr2	27136714	27136984	-	27136714	27137360	A5SS	ENSMUST00000129975.2	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000009614.17	Sardh	chr2	protein_coding	sarcosine dehydrogenase
novel_NIR_11290	chr2	27136714	27138288	-	27136714	27136811	5pMXE	ENSMUST00000149733.8	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.33	1	2	1	2	n	ENSMUSG00000009614.17	Sardh	chr2	protein_coding	sarcosine dehydrogenase
novel_NIR_11291	chr2	27136714	27138288	-	27136714	27137360	5pMXE	ENSMUST00000129975.2	novel	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000009614.17	Sardh	chr2	protein_coding	sarcosine dehydrogenase
novel_NIR_11292	chr2	27136714	27138293	-	27136714	27136811	5pMXE	ENSMUST00000149733.8	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	12	0	12	0	y	-	-	-	-	-	-	0.71	5	2	5	2	y	ENSMUSG00000009614.17	Sardh	chr2	protein_coding	sarcosine dehydrogenase
novel_NIR_11293	chr2	27136714	27138293	-	27136714	27137360	5pMXE	ENSMUST00000129975.2	novel	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.86	12	2	12	2	y	-	-	-	-	-	-	1.00	5	0	5	0	y	ENSMUSG00000009614.17	Sardh	chr2	protein_coding	sarcosine dehydrogenase
novel_NIR_11294	chr2	27157396	27158911	-	27157396;27158249	27158163;27158911	ES	ENSMUST00000185188.8	novel	1.00	77	0.0	77	0;0	y	1.00	50	0.0	50	0;0	y	1.00	76	0.0	76	0;0	y	1.00	92	0.0	92	0;0	y	1.00	124	0.0	124	0;0	y	1.00	38	0.0	38	0;0	y	1.00	87	0.0	87	0;0	y	1.00	53	0.0	53	0;0	y	1.00	61	0.0	61	0;0	y	1.00	132	0.0	132	0;0	y	1.00	68	0.0	68	0;0	y	1.00	104	0.0	104	0;0	y	ENSMUSG00000009621.19	Vav2	chr2	protein_coding	vav 2 oncogene
novel_NIR_11295	chr2	27159031	27160140	-	27159217	27160140	A3SS&ES	ENSMUST00000185188.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.67	4	2	4	2	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.75	3	1	3	1	y	0.50	2	2	2	2	y	1.00	2	0	2	0	y	0.67	2	1	2	1	y	ENSMUSG00000009621.19	Vav2	chr2	protein_coding	vav 2 oncogene
novel_NIR_11296	chr2	27159031	27160140	-	27159679	27160140	3pMXE	ENSMUST00000135584.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.50	2	2	2	2	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	ENSMUSG00000009621.19	Vav2	chr2	protein_coding	vav 2 oncogene
novel_NIR_11297	chr2	27338046	27338412	-	27338381	27338412	A3SS	ENSMUST00000164296.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000026918.17	Brd3	chr2	protein_coding	bromodomain containing 3
novel_NIR_11298	chr2	27354205	27363411	-	27354205	27354334	5pMXE	ENSMUST00000144758.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000026918.17	Brd3	chr2	protein_coding	bromodomain containing 3
novel_NIR_11299	chr2	27354205	27363411	-	27354205	27362588	A5SS&ES	ENSMUST00000147736.2	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.50	1	1	1	1	n	0.56	5	4	5	4	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.60	3	2	3	2	y	0.00	0	4	0	4	n	0.40	2	3	2	3	y	0.00	0	5	0	5	n	ENSMUSG00000026918.17	Brd3	chr2	protein_coding	bromodomain containing 3
novel_NIR_11300	chr2	27354205	27363411	-	27354205	27365058	A5SS	ENSMUST00000126059.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.83	5	1	5	1	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.75	3	1	3	1	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000026918.17	Brd3	chr2	protein_coding	bromodomain containing 3
novel_NIR_11301	chr2	27354205	27363411	-	27354205	27365154	A5SS	ENSMUST00000028282.15	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.83	5	1	5	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.60	3	2	3	2	y	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	3	0	3	n	ENSMUSG00000026918.17	Brd3	chr2	protein_coding	bromodomain containing 3
novel_NIR_11302	chr2	27354205	27363411	-	27354205	27365589	A5SS	ENSMUST00000077737.13	novel	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	20	0	20	n	0.04	1	24	1	24	n	0.24	5	16	5	16	y	0.00	0	9	0	9	n	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.17	3	15	3	15	y	0.00	0	14	0	14	n	0.18	2	9	2	9	y	0.00	0	18	0	18	n	ENSMUSG00000026918.17	Brd3	chr2	protein_coding	bromodomain containing 3
novel_NIR_11303	chr2	27354205	27363411	-	27354205	27397502	A5SS	ENSMUST00000154316.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000026918.17	Brd3	chr2	protein_coding	bromodomain containing 3
novel_NIR_11304	chr2	27362626	27363411	-	27362626	27365589	A5SS	ENSMUST00000147736.2	novel	1.00	3	0	3	0	y	0.50	1	1	1	1	n	0.00	0	4	0	4	n	1.00	1	0	1	0	n	0.40	2	3	2	3	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	5	0	5	0	y	0.00	0	1	0	1	n	0.80	8	2	8	2	y	ENSMUSG00000026918.17	Brd3	chr2	protein_coding	bromodomain containing 3
novel_NIR_11305	chr2	27405292	27408720	+	27405292	27408641	A3SS	ENSMUST00000144315.8	novel	0.00	0	13	0	13	n	0.20	3	12	3	12	y	0.00	0	57	0	57	n	0.03	1	36	1	36	n	0.03	1	28	1	28	n	0.00	0	15	0	15	n	0.00	0	31	0	31	n	0.06	1	15	1	15	n	0.00	0	18	0	18	n	0.03	1	30	1	30	n	0.00	0	27	0	27	n	0.00	0	31	0	31	n	ENSMUSG00000026917.16	Wdr5	chr2	protein_coding	WD repeat domain 5
novel_NIR_11306	chr2	27430577	27432741	+	27430532	27432741	A5SS	ENSMUST00000132898.2	novel	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.20	1	4	1	4	n	-	-	-	-	-	-	0.60	3	2	3	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.43	3	4	3	4	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000085929.2	Gm13421	chr2	lncRNA	predicted gene 13421
novel_NIR_11307	chr2	27430577	27432741	+	27430606	27432741	A5SS	ENSMUST00000142511.2	novel	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.14	1	6	1	6	n	-	-	-	-	-	-	0.50	3	3	3	3	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.33	3	6	3	6	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000085929.2	Gm13421	chr2	lncRNA	predicted gene 13421
novel_NIR_11308	chr2	27566359	27627311	+	27599384	27627311	5pMXE	ENSMUST00000100251.9	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000015846.16	Rxra	chr2	protein_coding	retinoid X receptor alpha
novel_NIR_11309	chr2	27566359	27627311	+	27600712	27627311	5pMXE	ENSMUST00000113934.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000015846.16	Rxra	chr2	protein_coding	retinoid X receptor alpha
novel_NIR_11310	chr2	27566359	27627311	+	27611748	27627311	5pMXE	ENSMUST00000238859.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000015846.16	Rxra	chr2	protein_coding	retinoid X receptor alpha
novel_NIR_11311	chr2	27566359	27627311	+	27615485	27627311	5pMXE	ENSMUST00000238913.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000015846.16	Rxra	chr2	protein_coding	retinoid X receptor alpha
novel_NIR_11312	chr2	27566507	27627311	+	27566527	27627311	A5SS	ENSMUST00000129514.8	novel	0.00	0	22	0	22	n	0.00	0	18	0	18	n	0.00	0	12	0	12	n	0.00	0	25	0	25	n	0.43	35	47	35	47	y	0.00	0	11	0	11	n	0.44	24	31	24	31	y	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.46	32	38	32	38	y	0.00	0	23	0	23	n	0.00	0	23	0	23	n	ENSMUSG00000015846.16	Rxra	chr2	protein_coding	retinoid X receptor alpha
novel_NIR_11313	chr2	27566507	27627311	+	27567472	27627311	5pMXE	ENSMUST00000077257.12	novel	0.00	0	108	0	108	n	0.00	0	74	0	74	n	0.00	0	205	0	205	n	0.00	0	138	0	138	n	0.13	35	235	35	235	n	0.00	0	143	0	143	n	0.14	24	144	24	144	n	0.00	0	119	0	119	n	0.00	0	81	0	81	n	0.16	32	165	32	165	y	0.00	0	101	0	101	n	0.00	0	169	0	169	n	ENSMUSG00000015846.16	Rxra	chr2	protein_coding	retinoid X receptor alpha
novel_NIR_11314	chr2	27566507	27627311	+	27599384	27627311	5pMXE	ENSMUST00000100251.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	35	0	35	0	y	-	-	-	-	-	-	1.00	24	0	24	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	32	0	32	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000015846.16	Rxra	chr2	protein_coding	retinoid X receptor alpha
novel_NIR_11315	chr2	27566507	27627311	+	27600712	27627311	5pMXE	ENSMUST00000113934.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.97	35	1	35	1	y	-	-	-	-	-	-	1.00	24	0	24	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	32	0	32	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000015846.16	Rxra	chr2	protein_coding	retinoid X receptor alpha
novel_NIR_11316	chr2	27566507	27627311	+	27611748	27627311	5pMXE	ENSMUST00000238859.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.95	35	2	35	2	y	-	-	-	-	-	-	1.00	24	0	24	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.97	32	1	32	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000015846.16	Rxra	chr2	protein_coding	retinoid X receptor alpha
novel_NIR_11317	chr2	27566507	27627311	+	27615485	27627311	5pMXE	ENSMUST00000238913.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	35	0	35	0	y	-	-	-	-	-	-	1.00	24	0	24	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	32	0	32	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000015846.16	Rxra	chr2	protein_coding	retinoid X receptor alpha
novel_NIR_11318	chr2	27625331	27627311	+	27566527	27627311	A5SS	ENSMUST00000129514.8	novel	0.00	0	22	0	22	n	0.00	0	18	0	18	n	0.20	3	12	3	12	y	0.00	0	25	0	25	n	0.00	0	47	0	47	n	0.00	0	11	0	11	n	0.00	0	31	0	31	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.00	0	38	0	38	n	0.00	0	23	0	23	n	0.00	0	23	0	23	n	ENSMUSG00000015846.16	Rxra	chr2	protein_coding	retinoid X receptor alpha
novel_NIR_11319	chr2	27625331	27627311	+	27599384	27627311	A5SS	ENSMUST00000100251.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000015846.16	Rxra	chr2	protein_coding	retinoid X receptor alpha
novel_NIR_11320	chr2	27625331	27627311	+	27600712	27627311	A5SS	ENSMUST00000113934.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000015846.16	Rxra	chr2	protein_coding	retinoid X receptor alpha
novel_NIR_11321	chr2	27625331	27627311	+	27611748	27627311	A5SS	ENSMUST00000238859.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000015846.16	Rxra	chr2	protein_coding	retinoid X receptor alpha
novel_NIR_11322	chr2	27625331	27627311	+	27615485	27627311	A5SS	ENSMUST00000238913.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000015846.16	Rxra	chr2	protein_coding	retinoid X receptor alpha
novel_NIR_11323	chr2	28764193	28765727	+	28764193	28765702	A3SS	ENSMUST00000113853.3	novel	0.09	1	10	1	10	n	0.00	0	12	0	12	n	0.00	0	17	0	17	n	0.00	0	15	0	15	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.00	0	15	0	15	n	0.00	0	16	0	16	n	0.28	5	13	5	13	y	ENSMUSG00000026806.16	Ddx31	chr2	protein_coding	DEAD/H box helicase 31
novel_NIR_11324	chr2	28964813	28969401	+	28964820	28969401	A5SS	ENSMUST00000100237.4	novel	0.20	3	12	3	12	y	0.50	6	6	6	6	y	0.32	6	13	6	13	y	0.50	7	7	7	7	y	0.22	6	21	6	21	y	0.39	7	11	7	11	y	0.72	13	5	13	5	y	0.18	2	9	2	9	y	0.42	8	11	8	11	y	0.24	4	13	4	13	y	0.21	3	11	3	11	y	0.40	8	12	8	12	y	ENSMUSG00000026803.18	Ttf1	chr2	protein_coding	transcription termination factor, RNA polymerase I
novel_NIR_11325	chr2	29087161	29088044	-	29087161	29088826	A5SS	ENSMUST00000048455.9	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.25	2	6	2	6	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000035513.20	Ntng2	chr2	protein_coding	netrin G2
novel_NIR_11326	chr2	29087161	29088044	-	29087161	29094910	A5SS	ENSMUST00000102873.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	2	2	2	2	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035513.20	Ntng2	chr2	protein_coding	netrin G2
novel_NIR_11327	chr2	29087161	29088044	-	29087161	29097213	A5SS	ENSMUST00000177689.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035513.20	Ntng2	chr2	protein_coding	netrin G2
novel_NIR_11328	chr2	29087161	29088044	-	29087161	29097404	A5SS	ENSMUST00000183583.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035513.20	Ntng2	chr2	protein_coding	netrin G2
novel_NIR_11329	chr2	29551197	29569145	+	29533926	29569145	A5SS	ENSMUST00000238899.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039844.21	Rapgef1	chr2	protein_coding	Rap guanine nucleotide exchange factor (GEF) 1
novel_NIR_11330	chr2	29597412	29609605	+	29597412	29600168	A3SS&ES	ENSMUST00000147488.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.29	2	5	2	5	y	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	0.75	3	1	3	1	y	0.00	0	3	0	3	n	ENSMUSG00000039844.21	Rapgef1	chr2	protein_coding	Rap guanine nucleotide exchange factor (GEF) 1
novel_NIR_11331	chr2	29597412	29609605	+	29597412;29600320	29600165;29609605	ES	ENSMUST00000095087.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.22	2	7.0	2	5;9	y	-	-	-	-	-	-	-	-	-	-	-	-	0.67	1	0.5	1	0;1	n	1.00	3	0.0	3	0;0	y	0.00	0	0.5	0	1;0	n	ENSMUSG00000039844.21	Rapgef1	chr2	protein_coding	Rap guanine nucleotide exchange factor (GEF) 1
novel_NIR_11332	chr2	29597412	29609605	+	29597412;29600320	29600168;29609605	ES	ENSMUST00000147755.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.80	2	0.5	2	1;0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.22	2	7.0	2	5;9	y	-	-	-	-	-	-	-	-	-	-	-	-	0.40	1	1.5	1	2;1	n	0.86	3	0.5	3	1;0	y	0.00	0	1.5	0	3;0	n	ENSMUSG00000039844.21	Rapgef1	chr2	protein_coding	Rap guanine nucleotide exchange factor (GEF) 1
novel_NIR_11333	chr2	29717447	29722706	+	29717447	29722704	A3SS	ENSMUST00000091142.4	novel	0.05	1	21	1	21	n	0.00	0	14	0	14	n	0.15	4	23	4	23	y	0.04	1	25	1	25	n	0.11	3	25	3	25	n	0.13	2	13	2	13	n	0.09	3	29	3	29	n	0.00	0	15	0	15	n	0.00	0	22	0	22	n	0.00	0	31	0	31	n	0.00	0	19	0	19	n	0.04	1	27	1	27	n	ENSMUSG00000069020.10	Urm1	chr2	protein_coding	ubiquitin related modifier 1
novel_NIR_11334	chr2	29717447	29722706	+	29717447	29731414	A3SS	ENSMUST00000156944.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.50	2	2	2	2	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000069020.10	Urm1	chr2	protein_coding	ubiquitin related modifier 1
novel_NIR_11335	chr2	29731495	29732477	+	29731495	29732474	A3SS	ENSMUST00000147325.2	novel	0.33	2	4	2	4	y	-	-	-	-	-	-	1.00	5	0	5	0	y	0.33	2	4	2	4	y	0.00	0	5	0	5	n	0.75	3	1	3	1	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	4	2	4	2	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	ENSMUSG00000069020.10	Urm1	chr2	protein_coding	ubiquitin related modifier 1
novel_NIR_11336	chr2	29731495	29732508	+	29731495	29732474	A3SS	ENSMUST00000147325.2	novel	0.33	2	4	2	4	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	ENSMUSG00000069020.10	Urm1	chr2	protein_coding	ubiquitin related modifier 1
novel_NIR_11337	chr2	29928438	29934941	-	29928438	29938696	A5SS	ENSMUST00000113711.3	novel	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.00	0	18	0	18	n	0.00	0	16	0	16	n	0.00	0	40	0	40	n	0.00	0	12	0	12	n	0.05	1	20	1	20	n	0.00	0	12	0	12	n	0.00	0	17	0	17	n	0.00	0	17	0	17	n	0.00	0	19	0	19	n	0.15	2	11	2	11	y	ENSMUSG00000039715.9	Dync2i2	chr2	protein_coding	dynein 2 intermediate chain 2
novel_NIR_11338	chr2	29932219	29938696	-	29928438	29938696	A3SS	ENSMUST00000113711.3	novel	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.05	1	18	1	18	n	0.00	0	16	0	16	n	0.00	0	40	0	40	n	0.00	0	12	0	12	n	0.00	0	20	0	20	n	0.00	0	12	0	12	n	0.00	0	17	0	17	n	0.00	0	17	0	17	n	0.00	0	19	0	19	n	0.15	2	11	2	11	y	ENSMUSG00000039715.9	Dync2i2	chr2	protein_coding	dynein 2 intermediate chain 2
novel_NIR_11339	chr2	29932219	29938696	-	29937370	29938696	3pMXE	ENSMUST00000146275.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000039715.9	Dync2i2	chr2	protein_coding	dynein 2 intermediate chain 2
novel_NIR_11340	chr2	29995034	29997513	-	29995034	29997507	A5SS	ENSMUST00000044751.14	novel	0.44	7	9	7	9	y	0.23	6	20	6	20	y	0.21	5	19	5	19	y	0.29	8	20	8	20	y	0.29	9	22	9	22	y	0.19	3	13	3	13	y	0.04	1	24	1	24	n	0.05	1	18	1	18	n	0.00	0	14	0	14	n	0.39	14	22	14	22	y	0.14	2	12	2	12	n	0.10	3	26	3	26	n	ENSMUSG00000039686.15	Zer1	chr2	protein_coding	zyg-11 related, cell cycle regulator
novel_NIR_11341	chr2	30003493	30014339	-	30003493	30014288	A5SS	ENSMUST00000044751.14	novel	0.00	0	9	0	9	n	0.10	1	9	1	9	n	0.12	1	7	1	7	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	20	0	20	n	0.14	1	6	1	6	n	0.07	1	14	1	14	n	0.00	0	3	0	3	n	0.16	3	16	3	16	y	ENSMUSG00000039686.15	Zer1	chr2	protein_coding	zyg-11 related, cell cycle regulator
novel_NIR_11342	chr2	30024882	30027133	+	30024882;30026725	30026685;30027133	ES	ENSMUST00000044556.12	novel	0.04	1	22.5	1	20;25	n	0.00	0	17.5	0	15;20	n	0.23	5	17.0	5	16;18	y	0.00	0	21.5	0	17;26	n	0.03	1	37.0	1	29;45	n	0.00	0	11.5	0	10;13	n	0.10	2	18.0	2	17;19	n	0.00	0	13.0	0	8;18	n	0.07	1	14.0	1	6;22	n	0.05	2	35.0	2	28;42	n	0.00	0	17.0	0	10;24	n	0.00	0	27.0	0	21;33	n	ENSMUSG00000039678.13	Tbc1d13	chr2	protein_coding	TBC1 domain family, member 13
novel_NIR_11343	chr2	30078724	30081937	-	30078151	30081937	A3SS	ENSMUST00000113659.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039648.15	Kyat1	chr2	protein_coding	kynurenine aminotransferase 1
novel_NIR_11344	chr2	30088096	30095645	-	30084172	30095645	A3SS	ENSMUST00000113662.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.71	5	2	5	2	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039648.15	Kyat1	chr2	protein_coding	kynurenine aminotransferase 1
novel_NIR_11345	chr2	30088122	30095645	-	30084172	30095645	A3SS	ENSMUST00000113662.8	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	2	0	2	n	1.00	4	0	4	0	y	1.00	7	0	7	0	n	ENSMUSG00000039648.15	Kyat1	chr2	protein_coding	kynurenine aminotransferase 1
novel_NIR_11346	chr2	30088138	30095645	-	30084172	30095645	A3SS	ENSMUST00000113662.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039648.15	Kyat1	chr2	protein_coding	kynurenine aminotransferase 1
novel_NIR_11347	chr2	30088152	30095645	-	30084172	30095645	A3SS	ENSMUST00000113662.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	13	0	13	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	8	0	8	0	y	-	-	-	-	-	-	ENSMUSG00000039648.15	Kyat1	chr2	protein_coding	kynurenine aminotransferase 1
novel_NIR_11348	chr2	30093733	30095645	-	30084172	30095645	A3SS	ENSMUST00000113662.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.67	4	2	4	2	y	1.00	5	0	5	0	y	-	-	-	-	-	-	ENSMUSG00000039648.15	Kyat1	chr2	protein_coding	kynurenine aminotransferase 1
novel_NIR_11349	chr2	30127443	30130581	+	30127817	30130581	5pMXE	ENSMUST00000095078.3	novel	0.00	0	19	0	19	n	0.18	2	9	2	9	y	0.00	0	25	0	25	n	0.04	1	23	1	23	n	0.10	5	43	5	43	n	0.00	0	25	0	25	n	0.08	2	24	2	24	n	0.00	0	18	0	18	n	0.00	0	12	0	12	n	0.08	1	12	1	12	n	0.08	1	12	1	12	n	0.00	0	15	0	15	n	ENSMUSG00000007476.19	Lrrc8a	chr2	protein_coding	leucine rich repeat containing 8A VRAC subunit A
novel_NIR_11350	chr2	30159859	30163368	+	30159859	30167015	A3SS	ENSMUST00000085290.4	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.75	6	2	6	2	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000079484.13	Phyhd1	chr2	protein_coding	phytanoyl-CoA dioxygenase domain containing 1
novel_NIR_11351	chr2	30159863	30163368	+	30159863	30164488	A3SS	ENSMUST00000139454.3	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000099041.2	Gm28035	chr2	protein_coding	predicted gene, 28035
novel_NIR_11352	chr2	30159863	30164482	+	30159863	30164488	A3SS	ENSMUST00000139454.3	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	1.00	3	0	3	0	y	1.00	16	0	16	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	1.00	1	0	1	0	n	1.00	7	0	7	0	y	1.00	9	0	9	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000099041.2	Gm28035	chr2	protein_coding	predicted gene, 28035
novel_NIR_11353	chr2	30167222	30167513	+	30167222	30169967	A3SS	ENSMUST00000127689.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000079484.13	Phyhd1	chr2	protein_coding	phytanoyl-CoA dioxygenase domain containing 1
novel_NIR_11354	chr2	30169718	30169967	+	30164735	30169967	A5SS	ENSMUST00000150695.8	novel	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	1.00	4	0	4	0	y	0.70	7	3	7	3	y	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.09	1	10	1	10	n	ENSMUSG00000079484.13	Phyhd1	chr2	protein_coding	phytanoyl-CoA dioxygenase domain containing 1
novel_NIR_11355	chr2	30169718	30169967	+	30167222	30169967	A5SS	ENSMUST00000127689.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000079484.13	Phyhd1	chr2	protein_coding	phytanoyl-CoA dioxygenase domain containing 1
novel_NIR_11356	chr2	30169718	30169967	+	30167841	30169967	A5SS	ENSMUST00000138254.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000079484.13	Phyhd1	chr2	protein_coding	phytanoyl-CoA dioxygenase domain containing 1
novel_NIR_11357	chr2	30235951	30236319	-	30235951	30236071	A5SS&ES	ENSMUST00000100215.11	novel	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.40	2	3	2	3	y	0.50	3	3	3	3	y	0.00	0	7	0	7	n	0.33	1	2	1	2	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.06	1	16	1	16	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	ENSMUSG00000026860.17	Sh3glb2	chr2	protein_coding	SH3-domain GRB2-like endophilin B2
novel_NIR_11358	chr2	30236085	30236319	-	30236085	30236365	A5SS	ENSMUST00000100215.11	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.18	2	9	2	9	y	0.00	0	11	0	11	n	ENSMUSG00000026860.17	Sh3glb2	chr2	protein_coding	SH3-domain GRB2-like endophilin B2
novel_NIR_11359	chr2	30237116	30237495	-	30237116	30240300	A5SS	ENSMUST00000113620.10	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.40	2	3	2	3	y	1.00	1	0	1	0	n	ENSMUSG00000026860.17	Sh3glb2	chr2	protein_coding	SH3-domain GRB2-like endophilin B2
novel_NIR_11360	chr2	30244993	30245295	-	30244993	30245248	A5SS	ENSMUST00000139963.2	novel	1.00	6	0	6	0	y	1.00	6	0	6	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	0.67	2	1	2	1	y	0.00	0	1	0	1	n	1.00	7	0	7	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.88	14	2	14	2	y	1.00	8	0	8	0	y	0.88	7	1	7	1	y	ENSMUSG00000026860.17	Sh3glb2	chr2	protein_coding	SH3-domain GRB2-like endophilin B2
novel_NIR_11361	chr2	30244993	30245295	-	30244993	30245273	A5SS	ENSMUST00000100215.11	novel	0.10	6	53	6	53	n	0.11	6	51	6	51	n	0.07	2	28	2	28	n	0.04	2	53	2	53	n	0.03	2	76	2	76	n	0.00	0	17	0	17	n	0.09	7	73	7	73	n	0.00	0	40	0	40	n	0.00	0	42	0	42	n	0.16	14	71	14	71	y	0.14	8	48	8	48	n	0.12	7	53	7	53	n	ENSMUSG00000026860.17	Sh3glb2	chr2	protein_coding	SH3-domain GRB2-like endophilin B2
novel_NIR_11362	chr2	30257799	30258947	+	30257799	30258594	3pMXE	ENSMUST00000146308.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026858.19	Miga2	chr2	protein_coding	mitoguardin 2
novel_NIR_11363	chr2	30272579	30272978	+	30272089	30272978	A5SS	ENSMUST00000176517.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.33	1	2	1	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.50	1	1	1	1	n	1.00	1	0	1	0	n	ENSMUSG00000026858.19	Miga2	chr2	protein_coding	mitoguardin 2
novel_NIR_11364	chr2	30286264	30286468	+	30286264	30287480	A3SS	ENSMUST00000155196.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026856.15	Dolpp1	chr2	protein_coding	dolichyl pyrophosphate phosphatase 1
novel_NIR_11365	chr2	30286264	30286468	+	30286264	30290350	A3SS	ENSMUST00000151018.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026856.15	Dolpp1	chr2	protein_coding	dolichyl pyrophosphate phosphatase 1
novel_NIR_11366	chr2	30286264	30286489	+	30286264	30287480	A3SS	ENSMUST00000155196.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026856.15	Dolpp1	chr2	protein_coding	dolichyl pyrophosphate phosphatase 1
novel_NIR_11367	chr2	30286264	30286489	+	30286264	30290350	A3SS	ENSMUST00000151018.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026856.15	Dolpp1	chr2	protein_coding	dolichyl pyrophosphate phosphatase 1
novel_NIR_11368	chr2	30303198	30305207	-	30303789	30305207	A3SS&ES	ENSMUST00000129494.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026853.16	Crat	chr2	protein_coding	carnitine acetyltransferase
novel_NIR_11369	chr2	30303198	30305207	-	30304008	30305207	A3SS&ES	ENSMUST00000132981.9	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.33	3	6	3	6	y	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000026853.16	Crat	chr2	protein_coding	carnitine acetyltransferase
novel_NIR_11370	chr2	30303258	30304033	-	30303258	30303641	A5SS&ES	ENSMUST00000129494.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	12	0	12	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000026853.16	Crat	chr2	protein_coding	carnitine acetyltransferase
novel_NIR_11371	chr2	30303258	30304033	-	30303258	30303872	A5SS&ES	ENSMUST00000132981.9	novel	1.00	1	0	1	0	n	0.00	0	5	0	5	n	0.67	12	6	12	6	y	0.25	1	3	1	3	n	0.08	1	12	1	12	n	0.00	0	9	0	9	n	0.27	3	8	3	8	y	0.10	1	9	1	9	n	0.33	1	2	1	2	n	0.20	1	4	1	4	n	0.60	3	2	3	2	y	0.00	0	2	0	2	n	ENSMUSG00000026853.16	Crat	chr2	protein_coding	carnitine acetyltransferase
novel_NIR_11372	chr2	30303258	30304033	-	30303258	30304280	A5SS	ENSMUST00000102854.10	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	12	0	12	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000026853.16	Crat	chr2	protein_coding	carnitine acetyltransferase
novel_NIR_11373	chr2	30303258	30304033	-	30303258	30305324	A5SS	ENSMUST00000102855.8	novel	0.11	1	8	1	8	n	0.00	0	4	0	4	n	0.44	12	15	12	15	y	0.14	1	6	1	6	n	0.09	1	10	1	10	n	0.00	0	14	0	14	n	0.05	3	59	3	59	n	0.14	1	6	1	6	n	0.25	1	3	1	3	n	0.11	1	8	1	8	n	0.27	3	8	3	8	y	0.00	0	8	0	8	n	ENSMUSG00000026853.16	Crat	chr2	protein_coding	carnitine acetyltransferase
novel_NIR_11374	chr2	30303258	30305225	-	30303258	30303641	A5SS&ES	ENSMUST00000129494.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026853.16	Crat	chr2	protein_coding	carnitine acetyltransferase
novel_NIR_11375	chr2	30303258	30305225	-	30303258	30303872	A5SS&ES	ENSMUST00000132981.9	novel	-	-	-	-	-	-	0.00	0	5	0	5	n	0.40	4	6	4	6	y	0.00	0	3	0	3	n	0.08	1	12	1	12	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.31	4	9	4	9	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000026853.16	Crat	chr2	protein_coding	carnitine acetyltransferase
novel_NIR_11376	chr2	30303258	30305225	-	30303258	30304280	A5SS&ES	ENSMUST00000102854.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026853.16	Crat	chr2	protein_coding	carnitine acetyltransferase
novel_NIR_11377	chr2	30303258	30305225	-	30303258	30305324	A5SS	ENSMUST00000102855.8	novel	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.21	4	15	4	15	y	0.00	0	6	0	6	n	0.09	1	10	1	10	n	0.00	0	14	0	14	n	0.00	0	59	0	59	n	0.40	4	6	4	6	y	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	ENSMUSG00000026853.16	Crat	chr2	protein_coding	carnitine acetyltransferase
novel_NIR_11378	chr2	30303258	30305327	-	30303258	30303641	A5SS&ES	ENSMUST00000129494.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026853.16	Crat	chr2	protein_coding	carnitine acetyltransferase
novel_NIR_11379	chr2	30303258	30305327	-	30303258	30303872	A5SS&ES	ENSMUST00000134120.2	novel	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.20	2	8	2	8	y	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000026853.16	Crat	chr2	protein_coding	carnitine acetyltransferase
novel_NIR_11380	chr2	30303258	30305327	-	30303258	30304280	A5SS&ES	ENSMUST00000102854.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026853.16	Crat	chr2	protein_coding	carnitine acetyltransferase
novel_NIR_11381	chr2	30304834	30305207	-	30303789	30305207	A3SS	ENSMUST00000129494.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000026853.16	Crat	chr2	protein_coding	carnitine acetyltransferase
novel_NIR_11382	chr2	30304834	30305207	-	30304008	30305207	A3SS	ENSMUST00000132981.9	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.40	4	6	4	6	y	1.00	2	0	2	0	y	0.40	4	6	4	6	y	0.38	3	5	3	5	y	0.00	0	6	0	6	n	0.00	0	6	0	6	n	1.00	1	0	1	0	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.33	2	4	2	4	y	ENSMUSG00000026853.16	Crat	chr2	protein_coding	carnitine acetyltransferase
novel_NIR_11383	chr2	30304834	30305207	-	30304834	30305324	A5SS	ENSMUST00000142096.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	2	0	2	0	y	0.67	4	2	4	2	y	0.60	3	2	3	2	y	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000026853.16	Crat	chr2	protein_coding	carnitine acetyltransferase
novel_NIR_11384	chr2	30306344	30316420	+	30306344	30318328	A3SS	ENSMUST00000159932.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039515.12	Ptpa	chr2	protein_coding	protein phosphatase 2 protein activator
novel_NIR_11385	chr2	30709780	30710465	+	30709780	30710461	A3SS	ENSMUST00000138889.8	novel	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.25	2	6	2	6	y	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	2	4	2	4	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000026857.10	Ntmt1	chr2	protein_coding	N-terminal Xaa-Pro-Lys N-methyltransferase 1
novel_NIR_11386	chr2	30844066	30845790	+	30843904	30845790	A5SS	ENSMUST00000132514.7	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026848.15	Tor1b	chr2	protein_coding	torsin family 1, member B
novel_NIR_11387	chr2	30907523	30907703	+	30907523	30907694	A3SS	ENSMUST00000102849.11	novel	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	20	0	20	n	0.00	0	12	0	12	n	0.18	2	9	2	9	y	0.00	0	5	0	5	n	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	ENSMUSG00000026854.17	Usp20	chr2	protein_coding	ubiquitin specific peptidase 20
novel_NIR_11388	chr2	30974097	30995254	-	30987162	30995254	A3SS&ES	ENSMUST00000136181.8	novel	0.00	0	25	0	25	n	0.00	0	13	0	13	n	0.00	0	16	0	16	n	0.00	0	24	0	24	n	0.00	0	29	0	29	n	0.00	0	5	0	5	n	0.00	0	20	0	20	n	0.00	0	6	0	6	n	0.17	4	19	4	19	y	0.03	1	32	1	32	n	0.00	0	7	0	7	n	0.00	0	20	0	20	n	ENSMUSG00000075415.14	Fnbp1	chr2	protein_coding	formin binding protein 1
novel_NIR_11389	chr2	31063078	31064214	+	31062425	31064214	A5SS	ENSMUST00000151991.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000000194.14	Gpr107	chr2	protein_coding	G protein-coupled receptor 107
novel_NIR_11390	chr2	31314094	31314209	+	31314079	31314209	A5SS	ENSMUST00000113532.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000055632.19	Hmcn2	chr2	protein_coding	hemicentin 2
novel_NIR_11391	chr2	31473272	31475134	+	31473272	31482475	A3SS	ENSMUST00000113482.8	novel	0.00	0	17	0	17	n	0.05	1	21	1	21	n	0.03	1	28	1	28	n	0.00	0	18	0	18	n	0.00	0	26	0	26	n	0.15	2	11	2	11	y	0.12	3	21	3	21	n	0.00	0	10	0	10	n	0.05	1	18	1	18	n	0.00	0	31	0	31	n	0.07	1	13	1	13	n	0.00	0	41	0	41	n	ENSMUSG00000026843.16	Fubp3	chr2	protein_coding	far upstream element (FUSE) binding protein 3
novel_NIR_11392	chr2	31473272	31475134	+	31473272	31482478	A3SS	ENSMUST00000137889.7	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.67	2	1	2	1	y	0.50	3	3	3	3	y	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	ENSMUSG00000026843.16	Fubp3	chr2	protein_coding	far upstream element (FUSE) binding protein 3
novel_NIR_11393	chr2	31501814	31502497	+	31502247	31502497	A5SS&ES	ENSMUST00000134553.7	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026843.16	Fubp3	chr2	protein_coding	far upstream element (FUSE) binding protein 3
novel_NIR_11394	chr2	31505698	31506191	+	31505637	31506191	A5SS	ENSMUST00000113482.8	novel	0.17	6	30	6	30	y	0.15	4	22	4	22	y	0.27	9	24	9	24	y	0.27	4	11	4	11	y	0.00	0	20	0	20	n	0.00	0	8	0	8	n	0.03	1	29	1	29	n	0.33	5	10	5	10	y	0.22	4	14	4	14	y	0.19	7	29	7	29	y	0.24	6	19	6	19	y	0.14	4	25	4	25	n	ENSMUSG00000026843.16	Fubp3	chr2	protein_coding	far upstream element (FUSE) binding protein 3
novel_NIR_11395	chr2	31580767	31668346	+	31579954	31668346	A5SS	ENSMUST00000075759.13	novel	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	18	0	18	n	0.17	1	5	1	5	n	0.00	0	16	0	16	n	0.00	0	2	0	2	n	0.38	3	5	3	5	y	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	ENSMUSG00000026842.17	Abl1	chr2	protein_coding	c-abl oncogene 1, non-receptor tyrosine kinase
novel_NIR_11396	chr2	31580767	31668346	+	31580771	31668346	A5SS	ENSMUST00000135233.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000026842.17	Abl1	chr2	protein_coding	c-abl oncogene 1, non-receptor tyrosine kinase
novel_NIR_11397	chr2	31580767	31668346	+	31585904	31668346	A5SS&ES	ENSMUST00000142554.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	4	0	4	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000026842.17	Abl1	chr2	protein_coding	c-abl oncogene 1, non-receptor tyrosine kinase
novel_NIR_11398	chr2	31580767	31668346	+	31650127	31668346	5pMXE	ENSMUST00000028190.13	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	ENSMUSG00000026842.17	Abl1	chr2	protein_coding	c-abl oncogene 1, non-receptor tyrosine kinase
novel_NIR_11399	chr2	31580767	31668346	+	31650467	31668346	5pMXE	ENSMUST00000124089.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000026842.17	Abl1	chr2	protein_coding	c-abl oncogene 1, non-receptor tyrosine kinase
novel_NIR_11400	chr2	32126753	32127353	+	32126753	32127372	A3SS	ENSMUST00000036473.16	novel	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	28	0	28	n	0.00	0	18	0	18	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.20	2	8	2	8	y	0.00	0	19	0	19	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	ENSMUSG00000039254.17	Pomt1	chr2	protein_coding	protein-O-mannosyltransferase 1
novel_NIR_11401	chr2	32177731	32178077	+	32177482	32178077	A5SS	ENSMUST00000139494.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000002546.18	Golga2	chr2	protein_coding	golgi autoantigen, golgin subfamily a, 2
novel_NIR_11402	chr2	32187589	32188898	+	32187589;32188650	32188612;32188898	ES	ENSMUST00000131712.9	novel	0.19	2	8.5	2	1;16	y	0.00	0	17.0	0	3;31	n	0.03	1	35.0	1	0;70	n	0.00	0	23.0	0	4;42	n	0.16	5	26.0	5	2;50	y	0.11	2	17.0	2	0;34	n	0.00	0	15.5	0	1;30	n	0.00	0	17.0	0	2;32	n	0.00	0	21.5	0	2;41	n	0.06	1	17.0	1	2;32	n	0.00	0	18.0	0	1;35	n	0.00	0	24.5	0	3;46	n	ENSMUSG00000002546.18	Golga2	chr2	protein_coding	golgi autoantigen, golgin subfamily a, 2
novel_NIR_11403	chr2	32187846	32188898	+	32187846;32188650	32188612;32188898	ES	ENSMUST00000239447.2	novel	0.17	3	15.0	3	14;16	y	0.03	1	28.5	1	26;31	n	0.00	0	73.5	0	77;70	n	0.00	0	39.5	0	37;42	n	0.02	1	48.5	1	47;50	n	0.00	0	35.5	0	37;34	n	0.06	2	31.0	2	32;30	n	0.00	0	30.5	0	29;32	n	0.00	0	42.5	0	44;41	n	0.00	0	36.0	0	40;32	n	0.00	0	36.5	0	38;35	n	0.00	0	51.0	0	56;46	n	ENSMUSG00000002546.18	Golga2	chr2	protein_coding	golgi autoantigen, golgin subfamily a, 2
novel_NIR_11404	chr2	32187846	32188898	+	32188650	32188898	A5SS&ES	ENSMUST00000131712.9	novel	0.16	3	16	3	16	y	0.03	1	31	1	31	n	0.00	0	70	0	70	n	0.00	0	42	0	42	n	0.02	1	50	1	50	n	0.00	0	34	0	34	n	0.06	2	30	2	30	n	0.00	0	32	0	32	n	0.00	0	41	0	41	n	0.00	0	32	0	32	n	0.00	0	35	0	35	n	0.00	0	46	0	46	n	ENSMUSG00000002546.18	Golga2	chr2	protein_coding	golgi autoantigen, golgin subfamily a, 2
novel_NIR_11405	chr2	32269545	32273154	-	32269545	32271694	5pMXE	ENSMUST00000146423.2	novel	0.50	3	3	3	3	y	0.75	6	2	6	2	y	0.67	6	3	6	3	y	0.00	0	5	0	5	n	0.50	4	4	4	4	y	0.75	3	1	3	1	y	0.67	6	3	6	3	y	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.14	1	6	1	6	n	0.20	1	4	1	4	n	0.33	1	2	1	2	n	ENSMUSG00000039195.5	1110008P14Rik	chr2	protein_coding	RIKEN cDNA 1110008P14 gene
novel_NIR_11406	chr2	32277759	32278187	-	32277759;32278105	32277863;32278187	ES	ENSMUST00000192241.2	novel	0.42	24	32.5	24	64;1	y	0.00	0	47.5	0	91;4	n	0.00	0	380.0	0	737;23	n	0.00	0	25.5	0	50;1	n	0.00	0	181.0	0	359;3	n	0.00	0	310.0	0	611;9	n	0.00	0	139.5	0	271;8	n	0.00	0	254.5	0	503;6	n	0.00	0	14.5	0	29;0	n	0.00	0	16.5	0	32;1	n	0.00	0	18.0	0	36;0	n	0.00	0	16.0	0	32;0	n	ENSMUSG00000026822.15	Lcn2	chr2	protein_coding	lipocalin 2
novel_NIR_11407	chr2	32287471	32287708	+	32286562	32287708	A5SS	ENSMUST00000123714.4	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026820.6	Ptges2	chr2	protein_coding	prostaglandin E synthase 2
novel_NIR_11408	chr2	32290120	32290419	+	32290120	32290402	A3SS	ENSMUST00000123714.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026820.6	Ptges2	chr2	protein_coding	prostaglandin E synthase 2
novel_NIR_11409	chr2	32290120	32290458	+	32290120	32290402	A3SS	ENSMUST00000123714.4	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.92	11	1	11	1	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	0.75	6	2	6	2	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026820.6	Ptges2	chr2	protein_coding	prostaglandin E synthase 2
novel_NIR_11410	chr2	32311611	32312061	-	32311611	32311797	5pMXE	ENSMUST00000153886.7	novel	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000026819.16	Slc25a25	chr2	protein_coding	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25
novel_NIR_11411	chr2	32311611	32312061	-	32311611	32320541	A5SS	ENSMUST00000052119.14	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026819.16	Slc25a25	chr2	protein_coding	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25
novel_NIR_11412	chr2	32311611	32312061	-	32311611	32321004	A5SS	ENSMUST00000136361.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026819.16	Slc25a25	chr2	protein_coding	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25
novel_NIR_11413	chr2	32311611	32312061	-	32311611	32341079	A5SS	ENSMUST00000028160.15	novel	0.00	0	8	0	8	n	0.17	2	10	2	10	y	0.03	1	30	1	30	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	ENSMUSG00000026819.16	Slc25a25	chr2	protein_coding	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25
novel_NIR_11414	chr2	32426244	32434204	+	32426244	32448039	A3SS	ENSMUST00000136816.8	novel	0.00	0	32	0	32	n	0.00	0	19	0	19	n	0.24	4	13	4	13	y	0.05	2	37	2	37	n	0.00	0	30	0	30	n	0.00	0	8	0	8	n	0.00	0	22	0	22	n	0.00	0	15	0	15	n	0.00	0	14	0	14	n	0.00	0	58	0	58	n	0.00	0	32	0	32	n	0.00	0	21	0	21	n	ENSMUSG00000039157.13	Fam102a	chr2	protein_coding	family with sequence similarity 102, member A
novel_NIR_11415	chr2	32426244	32434625	+	32426244	32448039	A3SS	ENSMUST00000136816.8	novel	0.00	0	32	0	32	n	0.00	0	19	0	19	n	0.24	4	13	4	13	y	0.00	0	37	0	37	n	0.06	2	30	2	30	n	0.00	0	8	0	8	n	0.00	0	22	0	22	n	0.06	1	15	1	15	n	0.07	1	14	1	14	n	0.02	1	58	1	58	n	0.00	0	32	0	32	n	0.05	1	21	1	21	n	ENSMUSG00000039157.13	Fam102a	chr2	protein_coding	family with sequence similarity 102, member A
novel_NIR_11416	chr2	32499328	32502298	+	32499328	32504793	A3SS	ENSMUST00000143625.2	novel	0.60	3	2	3	2	y	1.00	5	0	5	0	y	1.00	5	0	5	0	y	1.00	5	0	5	0	y	0.80	4	1	4	1	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	0.83	5	1	5	1	y	1.00	5	0	5	0	y	1.00	3	0	3	0	y	ENSMUSG00000026811.19	St6galnac6	chr2	protein_coding	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
novel_NIR_11417	chr2	32505180	32508217	+	32505180	32508509	A3SS	ENSMUST00000183538.8	novel	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.45	5	6	5	6	y	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	ENSMUSG00000026811.19	St6galnac6	chr2	protein_coding	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
novel_NIR_11418	chr2	32508616	32509356	+	32508616	32509352	A3SS	ENSMUST00000131229.8	novel	0.19	32	133	32	133	y	0.16	25	129	25	129	y	0.11	9	76	9	76	n	0.18	31	141	31	141	y	0.12	28	207	28	207	n	0.10	9	83	9	83	n	0.14	29	177	29	177	n	0.15	15	87	15	87	y	0.15	18	106	18	106	y	0.12	27	191	27	191	n	0.16	21	113	21	113	y	0.13	27	179	27	179	n	ENSMUSG00000026811.19	St6galnac6	chr2	protein_coding	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
novel_NIR_11419	chr2	32578027	32581202	-	32577849	32581202	A3SS	ENSMUST00000146498.8	novel	1.00	15	0	15	0	y	1.00	8	0	8	0	y	1.00	14	0	14	0	y	1.00	12	0	12	0	y	1.00	22	0	22	0	y	1.00	11	0	11	0	y	1.00	13	0	13	0	y	1.00	6	0	6	0	y	1.00	9	0	9	0	y	1.00	11	0	11	0	n	1.00	8	0	8	0	y	1.00	10	0	10	0	y	ENSMUSG00000009566.13	Fpgs	chr2	protein_coding	folylpolyglutamyl synthetase
novel_NIR_11420	chr2	32582733	32584223	-	32582733	32584001	5pMXE	ENSMUST00000028148.11	novel	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	39	0	39	n	0.00	0	9	0	9	n	0.00	0	21	0	21	n	0.00	0	10	0	10	n	0.04	1	23	1	23	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.25	2	6	2	6	y	ENSMUSG00000009566.13	Fpgs	chr2	protein_coding	folylpolyglutamyl synthetase
novel_NIR_11421	chr2	32582733	32590873	-	32582733	32584001	5pMXE	ENSMUST00000028148.11	novel	0.07	1	13	1	13	n	0.00	0	11	0	11	n	0.13	6	39	6	39	n	0.25	3	9	3	9	y	0.30	9	21	9	21	y	0.17	2	10	2	10	y	0.08	2	23	2	23	n	0.25	2	6	2	6	y	0.06	1	16	1	16	n	0.28	5	13	5	13	y	0.07	1	14	1	14	n	0.14	1	6	1	6	n	ENSMUSG00000009566.13	Fpgs	chr2	protein_coding	folylpolyglutamyl synthetase
novel_NIR_11422	chr2	32582733	32591220	-	32582733	32584001	5pMXE	ENSMUST00000028148.11	novel	0.13	2	13	2	13	n	0.08	1	11	1	11	n	0.07	3	39	3	39	n	0.10	1	9	1	9	n	0.16	4	21	4	21	y	0.33	5	10	5	10	y	0.00	0	23	0	23	n	0.14	1	6	1	6	n	0.00	0	16	0	16	n	0.13	2	13	2	13	n	0.00	0	14	0	14	n	0.14	1	6	1	6	n	ENSMUSG00000009566.13	Fpgs	chr2	protein_coding	folylpolyglutamyl synthetase
novel_NIR_11423	chr2	32600579	32600670	-	32600579	32602577	A5SS	ENSMUST00000123170.8	novel	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	11	0	11	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	8	0	8	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	ENSMUSG00000009555.17	Cdk9	chr2	protein_coding	cyclin-dependent kinase 9 (CDC2-related kinase)
novel_NIR_11424	chr2	32627570	32630660	+	32627570	32631222	A3SS	ENSMUST00000141670.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000059013.13	Sh2d3c	chr2	protein_coding	SH2 domain containing 3C
novel_NIR_11425	chr2	32627570	32630660	+	32627570	32634763	A3SS	ENSMUST00000074248.11	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	ENSMUSG00000059013.13	Sh2d3c	chr2	protein_coding	SH2 domain containing 3C
novel_NIR_11426	chr2	32647462	32648818	+	32647462	32647900	3pMXE	ENSMUST00000123624.2	novel	1.00	2	0	2	0	y	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000009563.17	Tor2a	chr2	protein_coding	torsin family 2, member A
novel_NIR_11427	chr2	32647462	32648818	+	32647462	32648769	A3SS	ENSMUST00000156617.8	novel	0.15	2	11	2	11	y	0.00	0	13	0	13	n	0.00	0	23	0	23	n	0.06	1	16	1	16	n	0.00	0	19	0	19	n	0.00	0	10	0	10	n	0.00	0	24	0	24	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	21	0	21	n	0.00	0	19	0	19	n	0.00	0	14	0	14	n	ENSMUSG00000009563.17	Tor2a	chr2	protein_coding	torsin family 2, member A
novel_NIR_11428	chr2	32647462	32648818	+	32647462	32649539	A3SS	ENSMUST00000175763.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000009563.17	Tor2a	chr2	protein_coding	torsin family 2, member A
novel_NIR_11429	chr2	32647551	32648683	+	32647551	32648769	A3SS	ENSMUST00000140999.2	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	0.50	3	3	3	3	y	1.00	1	0	1	0	n	0.14	1	6	1	6	n	-	-	-	-	-	-	0.40	2	3	2	3	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.60	6	4	6	4	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000009563.17	Tor2a	chr2	protein_coding	torsin family 2, member A
novel_NIR_11430	chr2	32648948	32649542	+	32648948	32649539	A3SS	ENSMUST00000009707.14	novel	0.04	7	155	7	155	n	0.00	0	164	0	164	n	0.01	2	217	2	217	n	0.09	13	129	13	129	n	0.00	0	251	0	251	n	0.05	6	121	6	121	n	0.06	15	234	15	234	n	0.15	22	120	22	120	y	0.02	3	130	3	130	n	0.05	10	200	10	200	n	0.07	10	138	10	138	n	0.02	4	171	4	171	n	ENSMUSG00000009563.17	Tor2a	chr2	protein_coding	torsin family 2, member A
novel_NIR_11431	chr2	32666818	32666906	+	32666818	32666995	A3SS	ENSMUST00000066352.6	novel	0.20	2	8	2	8	y	0.00	0	3	0	3	n	0.00	0	18	0	18	n	0.00	0	4	0	4	n	0.00	0	16	0	16	n	0.00	0	5	0	5	n	0.14	1	6	1	6	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	ENSMUSG00000053746.9	Ptrh1	chr2	protein_coding	peptidyl-tRNA hydrolase 1 homolog
novel_NIR_11432	chr2	32808802	32809005	+	32802599	32809005	A5SS	ENSMUST00000028135.15	novel	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.75	3	1	3	1	y	0.11	1	8	1	8	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.56	5	4	5	4	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000026796.17	Niban2	chr2	protein_coding	niban apoptosis regulator 2
novel_NIR_11433	chr2	32808802	32809005	+	32806152	32809005	A5SS	ENSMUST00000154514.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026796.17	Niban2	chr2	protein_coding	niban apoptosis regulator 2
novel_NIR_11434	chr2	32808802	32809005	+	32808699	32809005	A5SS	ENSMUST00000150875.2	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	21	0	21	n	0.20	3	12	3	12	y	0.06	1	17	1	17	n	0.00	0	21	0	21	n	0.00	0	7	0	7	n	0.18	5	23	5	23	y	0.00	0	7	0	7	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000026796.17	Niban2	chr2	protein_coding	niban apoptosis regulator 2
novel_NIR_11435	chr2	32823922	32826448	-	32823922;32825260	32825180;32826448	ES	ENSMUST00000028132.14	novel	0.00	0	11.5	0	8;15	n	0.00	0	8.5	0	9;8	n	0.00	0	7.5	0	7;8	n	0.00	0	11.5	0	7;16	n	0.09	2	21.0	2	21;21	n	0.00	0	7.5	0	9;6	n	0.19	3	12.5	3	9;16	y	0.00	0	10.0	0	10;10	n	0.00	0	12.0	0	10;14	n	0.00	0	16.5	0	17;16	n	0.00	0	4.5	0	3;6	n	0.00	0	8.5	0	6;11	n	ENSMUSG00000026792.17	Lrsam1	chr2	protein_coding	leucine rich repeat and sterile alpha motif containing 1
novel_NIR_11436	chr2	32837901	32841105	-	32837933	32841105	A3SS	ENSMUST00000028132.14	novel	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.00	0	8	0	8	n	0.00	0	19	0	19	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.40	2	3	2	3	y	0.00	0	6	0	6	n	0.00	0	18	0	18	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	ENSMUSG00000026792.17	Lrsam1	chr2	protein_coding	leucine rich repeat and sterile alpha motif containing 1
novel_NIR_11437	chr2	32851190	32851552	-	32851190	32851347	A5SS	ENSMUST00000138015.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026792.17	Lrsam1	chr2	protein_coding	leucine rich repeat and sterile alpha motif containing 1
novel_NIR_11438	chr2	32851190	32851552	-	32851190	32851582	A5SS	ENSMUST00000124492.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026792.17	Lrsam1	chr2	protein_coding	leucine rich repeat and sterile alpha motif containing 1
novel_NIR_11439	chr2	32851190	32851552	-	32851267	32851552	A3SS	ENSMUST00000145578.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000026792.17	Lrsam1	chr2	protein_coding	leucine rich repeat and sterile alpha motif containing 1
novel_NIR_11440	chr2	32851190	32851574	-	32851190	32851347	A5SS	ENSMUST00000138015.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000026792.17	Lrsam1	chr2	protein_coding	leucine rich repeat and sterile alpha motif containing 1
novel_NIR_11441	chr2	32851190	32851574	-	32851190	32851582	A5SS	ENSMUST00000124492.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000026792.17	Lrsam1	chr2	protein_coding	leucine rich repeat and sterile alpha motif containing 1
novel_NIR_11442	chr2	32851190	32851574	-	32851267	32851574	A3SS	ENSMUST00000113200.8	novel	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.67	4	2	4	2	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	ENSMUSG00000026792.17	Lrsam1	chr2	protein_coding	leucine rich repeat and sterile alpha motif containing 1
novel_NIR_11443	chr2	32851925	32852061	+	32851972	32852061	A5SS	ENSMUST00000102811.10	novel	0.17	2	10	2	10	y	0.00	0	15	0	15	n	0.00	0	16	0	16	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.00	0	18	0	18	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	16	0	16	n	0.00	0	33	0	33	n	0.00	0	16	0	16	n	ENSMUSG00000038900.18	Rpl12	chr2	protein_coding	ribosomal protein L12
novel_NIR_11444	chr2	32866035	32866149	-	32864995	32866149	A3SS	ENSMUST00000153484.7	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026791.15	Slc2a8	chr2	protein_coding	solute carrier family 2, (facilitated glucose transporter), member 8
novel_NIR_11445	chr2	32866035	32866149	-	32865496	32866149	A3SS	ENSMUST00000194066.6	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000026791.15	Slc2a8	chr2	protein_coding	solute carrier family 2, (facilitated glucose transporter), member 8
novel_NIR_11446	chr2	32867072	32871373	-	32867072	32871970	A5SS	ENSMUST00000194066.6	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000026791.15	Slc2a8	chr2	protein_coding	solute carrier family 2, (facilitated glucose transporter), member 8
novel_NIR_11447	chr2	33036665	33047784	-	33036665	33048922	A5SS	ENSMUST00000131298.7	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.25	2	6	2	6	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000038831.17	Ralgps1	chr2	protein_coding	Ral GEF with PH domain and SH3 binding motif 1
novel_NIR_11448	chr2	33036665	33047784	-	33036665;33045351	33045300;33047784	ES	ENSMUST00000091039.5	novel	0.67	1	0.5	1	1;0	n	0.00	0	1.0	0	0;2	n	-	-	-	-	-	-	0.00	0	1.0	0	0;2	n	1.00	2	0.0	2	0;0	y	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	0.00	0	1.5	0	1;2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1.0	0	1;1	n	ENSMUSG00000038831.17	Ralgps1	chr2	protein_coding	Ral GEF with PH domain and SH3 binding motif 1
novel_NIR_11449	chr2	33036665	33047784	-	33045351	33047784	A3SS&ES	ENSMUST00000113165.8	novel	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000038831.17	Ralgps1	chr2	protein_coding	Ral GEF with PH domain and SH3 binding motif 1
novel_NIR_11450	chr2	33345135	33358445	-	33345135	33352278	5pMXE	ENSMUST00000095035.3	novel	0.25	1	3	1	3	n	1.00	1	0	1	0	n	0.10	1	9	1	9	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.25	1	3	1	3	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.50	3	3	3	3	y	ENSMUSG00000026788.14	Zbtb43	chr2	protein_coding	zinc finger and BTB domain containing 43
novel_NIR_11451	chr2	33345135	33358445	-	33345135;33354986	33354926;33358445	ES	ENSMUST00000028125.12	novel	0.09	1	10.5	1	16;5	n	0.11	1	8.5	1	11;6	n	0.08	1	12.0	1	12;12	n	0.00	0	12.0	0	13;11	n	0.00	0	13.0	0	16;10	n	0.10	1	9.0	1	10;8	n	0.11	1	8.0	1	10;6	n	0.00	0	9.5	0	11;8	n	0.07	1	12.5	1	14;11	n	0.00	0	8.0	0	15;1	n	0.00	0	9.5	0	12;7	n	0.17	3	14.5	3	19;10	y	ENSMUSG00000026788.14	Zbtb43	chr2	protein_coding	zinc finger and BTB domain containing 43
novel_NIR_11452	chr2	33345135	33358445	-	33345135;33355049	33354926;33358445	ES	ENSMUST00000126442.2	novel	0.08	1	11.5	1	16;7	n	0.14	1	6.0	1	11;1	n	0.12	1	7.5	1	12;3	n	0.00	0	10.5	0	13;8	n	0.00	0	13.5	0	16;11	n	0.12	1	7.0	1	10;4	n	0.14	1	6.0	1	10;2	n	0.00	0	8.0	0	11;5	n	0.10	1	9.0	1	14;4	n	0.00	0	14.5	0	15;14	n	0.00	0	7.5	0	12;3	n	0.21	3	11.0	3	19;3	y	ENSMUSG00000026788.14	Zbtb43	chr2	protein_coding	zinc finger and BTB domain containing 43
novel_NIR_11453	chr2	33764472	33765761	-	33764472	33776798	A5SS	ENSMUST00000192765.6	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038740.10	Mvb12b	chr2	protein_coding	multivesicular body subunit 12B
novel_NIR_11454	chr2	33764472	33765761	-	33764472	33777332	A5SS	ENSMUST00000041555.10	novel	0.25	2	6	2	6	y	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.17	1	5	1	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000038740.10	Mvb12b	chr2	protein_coding	multivesicular body subunit 12B
novel_NIR_11455	chr2	3426452	3438026	+	3426452	3430305	A3SS&ES	ENSMUST00000132565.8	novel	0.14	1	6	1	6	n	0.50	2	2	2	2	y	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	ENSMUSG00000026648.19	Dclre1c	chr2	protein_coding	DNA cross-link repair 1C
novel_NIR_11456	chr2	3426452	3438026	+	3426452	3434784	A3SS&ES	ENSMUST00000115066.8	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000026648.19	Dclre1c	chr2	protein_coding	DNA cross-link repair 1C
novel_NIR_11457	chr2	34297266	34309120	+	34297266	34319530	A3SS	ENSMUST00000141253.2	novel	0.00	0	3	0	3	n	0.80	4	1	4	1	y	0.57	4	3	4	3	y	0.00	0	1	0	1	n	0.67	2	1	2	1	y	1.00	7	0	7	0	y	0.83	5	1	5	1	n	0.56	5	4	5	4	n	0.83	5	1	5	1	y	0.92	12	1	12	1	y	0.33	1	2	1	2	n	-	-	-	-	-	-	ENSMUSG00000038696.15	Mapkap1	chr2	protein_coding	mitogen-activated protein kinase associated protein 1
novel_NIR_11458	chr2	34297266	34309120	+	34297266	34322015	A3SS	ENSMUST00000147337.8	novel	0.00	0	47	0	47	n	0.17	4	20	4	20	y	0.07	4	56	4	56	n	0.00	0	63	0	63	n	0.03	2	66	2	66	n	0.19	7	30	7	30	y	0.08	5	61	5	61	n	0.16	5	27	5	27	n	0.15	5	29	5	29	y	0.16	12	62	12	62	y	0.03	1	34	1	34	n	0.00	0	50	0	50	n	ENSMUSG00000038696.15	Mapkap1	chr2	protein_coding	mitogen-activated protein kinase associated protein 1
novel_NIR_11459	chr2	34297266	34309120	+	34297266	34325145	A3SS	ENSMUST00000124443.8	novel	0.00	0	5	0	5	n	0.50	4	4	4	4	y	1.00	4	0	4	0	y	0.00	0	2	0	2	n	0.29	2	5	2	5	y	0.78	7	2	7	2	y	1.00	5	0	5	0	y	0.56	5	4	5	4	y	0.71	5	2	5	2	y	0.92	12	1	12	1	y	0.33	1	2	1	2	n	0.00	0	1	0	1	n	ENSMUSG00000038696.15	Mapkap1	chr2	protein_coding	mitogen-activated protein kinase associated protein 1
novel_NIR_11460	chr2	34297266	34309120	+	34297266	34334270	A3SS	ENSMUST00000156967.8	novel	0.00	0	8	0	8	n	0.57	4	3	4	3	y	0.67	4	2	4	2	y	0.00	0	1	0	1	n	0.22	2	7	2	7	y	0.64	7	4	7	4	y	0.71	5	2	5	2	y	0.83	5	1	5	1	y	1.00	5	0	5	0	y	0.75	12	4	12	4	y	0.17	1	5	1	5	n	0.00	0	3	0	3	n	ENSMUSG00000038696.15	Mapkap1	chr2	protein_coding	mitogen-activated protein kinase associated protein 1
novel_NIR_11461	chr2	34297266;34309277	34309120;34322015	+	34297266;34319638	34319530;34322015	MXE	ENSMUST00000141253.2	novel	0.00	0.0	1.5	0;0	3;0	n	0.50	2.0	2.0	4;0	1;3	n	0.40	2.0	3.0	4;0	3;3	n	0.00	0.0	1.0	0;0	1;1	n	0.25	1.0	3.0	2;0	1;5	n	1.00	3.5	0.0	7;0	0;0	n	0.90	4.5	0.5	5;4	1;0	y	0.55	3.0	2.5	5;1	4;1	n	0.62	2.5	1.5	5;0	1;2	n	0.63	6.0	3.5	12;0	1;6	n	0.60	1.5	1.0	1;2	2;0	n	-	-	-	-	-	-	ENSMUSG00000038696.15	Mapkap1	chr2	protein_coding	mitogen-activated protein kinase associated protein 1
novel_NIR_11462	chr2	34309277	34322015	+	34296860	34322015	A5SS	ENSMUST00000149383.8	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	2	0	2	0	n	0.00	0	2	0	2	n	ENSMUSG00000038696.15	Mapkap1	chr2	protein_coding	mitogen-activated protein kinase associated protein 1
novel_NIR_11463	chr2	34309277	34322015	+	34297101	34322015	A5SS	ENSMUST00000113124.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	ENSMUSG00000038696.15	Mapkap1	chr2	protein_coding	mitogen-activated protein kinase associated protein 1
novel_NIR_11464	chr2	3434838	3437475	+	3434843	3437475	A5SS	ENSMUST00000100463.10	novel	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.29	2	5	2	5	y	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	ENSMUSG00000026648.19	Dclre1c	chr2	protein_coding	DNA cross-link repair 1C
novel_NIR_11465	chr2	34471344	34509857	+	34509689	34509857	5pMXE	ENSMUST00000129633.2	novel	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038696.15	Mapkap1	chr2	protein_coding	mitogen-activated protein kinase associated protein 1
novel_NIR_11466	chr2	3451003	3451316	+	3448199	3451316	A5SS	ENSMUST00000100463.10	novel	0.00	0	12	0	12	n	0.25	2	6	2	6	y	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	18	0	18	n	0.00	0	7	0	7	n	0.07	1	13	1	13	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	14	0	14	n	0.00	0	28	0	28	n	ENSMUSG00000026648.19	Dclre1c	chr2	protein_coding	DNA cross-link repair 1C
novel_NIR_11467	chr2	34604306	34605217	-	34602350	34605217	A3SS	ENSMUST00000102800.9	novel	0.21	6	23	6	23	y	0.04	1	22	1	22	n	0.03	1	38	1	38	n	0.08	4	45	4	45	n	0.00	0	56	0	56	n	0.07	1	14	1	14	n	0.21	6	22	6	22	y	0.00	0	29	0	29	n	0.03	1	35	1	35	n	0.03	1	38	1	38	n	0.04	1	26	1	26	n	0.00	0	46	0	46	n	ENSMUSG00000026867.20	Gapvd1	chr2	protein_coding	GTPase activating protein and VPS9 domains 1
novel_NIR_11468	chr2	34620692	34638048	-	34620692	34624563	A5SS&ES	ENSMUST00000142436.2	novel	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000026867.20	Gapvd1	chr2	protein_coding	GTPase activating protein and VPS9 domains 1
novel_NIR_11469	chr2	34620692	34638048	-	34620692	34644278	A5SS	ENSMUST00000102800.9	novel	0.00	0	17	0	17	n	0.11	1	8	1	8	n	0.00	0	24	0	24	n	0.00	0	25	0	25	n	0.03	1	28	1	28	n	0.00	0	8	0	8	n	0.17	2	10	2	10	y	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.00	0	20	0	20	n	ENSMUSG00000026867.20	Gapvd1	chr2	protein_coding	GTPase activating protein and VPS9 domains 1
novel_NIR_11470	chr2	34624619	34642683	-	34624619	34644278	A5SS	ENSMUST00000142436.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	5	0	5	n	-	-	-	-	-	-	ENSMUSG00000026867.20	Gapvd1	chr2	protein_coding	GTPase activating protein and VPS9 domains 1
novel_NIR_11471	chr2	34676521	34680515	-	34675737	34680515	A3SS	ENSMUST00000141099.2	novel	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.22	2	7	2	7	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	ENSMUSG00000070953.14	Rabepk	chr2	protein_coding	Rab9 effector protein with kelch motifs
novel_NIR_11472	chr2	34685270	34687387	-	34680667	34687387	A3SS	ENSMUST00000141099.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000070953.14	Rabepk	chr2	protein_coding	Rab9 effector protein with kelch motifs
novel_NIR_11473	chr2	34742845	34744260	-	34742845	34746460	A5SS	ENSMUST00000135575.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.25	1	3	1	3	n	ENSMUSG00000026869.13	Psmd5	chr2	protein_coding	proteasome (prosome, macropain) 26S subunit, non-ATPase, 5
novel_NIR_11474	chr2	34744340	34746460	-	34742845	34746460	A3SS	ENSMUST00000135575.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000026869.13	Psmd5	chr2	protein_coding	proteasome (prosome, macropain) 26S subunit, non-ATPase, 5
novel_NIR_11475	chr2	34756107	34760762	-	34756107;34757049	34756905;34760762	ES	ENSMUST00000028225.12	novel	0.03	1	37.0	1	41;33	n	0.04	1	27.5	1	34;21	n	0.00	0	62.0	0	66;58	n	0.05	3	59.0	3	59;59	n	0.04	3	67.0	3	69;65	n	0.15	4	23.5	4	27;20	y	0.11	8	66.0	8	76;56	n	0.00	0	36.0	0	42;30	n	0.07	3	39.0	3	46;32	n	0.01	1	72.0	1	75;69	n	0.02	1	47.5	1	49;46	n	0.06	4	61.0	4	70;52	n	ENSMUSG00000026869.13	Psmd5	chr2	protein_coding	proteasome (prosome, macropain) 26S subunit, non-ATPase, 5
novel_NIR_11476	chr2	34756107	34764657	-	34757049	34764657	3pMXE	ENSMUST00000189715.2	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.07	1	13	1	13	n	0.00	0	5	0	5	n	0.14	1	6	1	6	n	ENSMUSG00000026869.13	Psmd5	chr2	protein_coding	proteasome (prosome, macropain) 26S subunit, non-ATPase, 5
novel_NIR_11477	chr2	34757049	34760544	-	34757049	34764657	A5SS	ENSMUST00000189715.2	novel	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.67	4	2	4	2	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.17	1	5	1	5	n	0.00	0	6	0	6	n	ENSMUSG00000026869.13	Psmd5	chr2	protein_coding	proteasome (prosome, macropain) 26S subunit, non-ATPase, 5
novel_NIR_11478	chr2	34896177	34898196	-	34896177	34896311	5pMXE	ENSMUST00000151628.2	novel	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	6	0	6	0	y	1.00	22	0	22	0	y	1.00	7	0	7	0	y	1.00	6	0	6	0	y	1.00	14	0	14	0	y	1.00	8	0	8	0	y	1.00	9	0	9	0	y	1.00	6	0	6	0	y	1.00	13	0	13	0	y	1.00	20	0	20	0	y	ENSMUSG00000026874.11	Hc	chr2	protein_coding	hemolytic complement
novel_NIR_11479	chr2	34908164	34909477	-	34879230	34909477	A3SS	ENSMUST00000156412.3	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	7	0	7	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	ENSMUSG00000026874.11	Hc	chr2	protein_coding	hemolytic complement
novel_NIR_11480	chr2	34985935	34990867	-	34985935	34990577	5pMXE	ENSMUST00000134940.9	novel	0.13	2	13	2	13	n	0.15	2	11	2	11	y	0.00	0	3	0	3	n	0.08	3	35	3	35	n	0.09	2	21	2	21	n	0.00	0	3	0	3	n	0.00	0	23	0	23	n	0.00	0	15	0	15	n	0.00	0	24	0	24	n	0.00	0	49	0	49	n	0.00	0	20	0	20	n	0.00	0	46	0	46	n	ENSMUSG00000035875.16	AI182371	chr2	protein_coding	expressed sequence AI182371
novel_NIR_11481	chr2	34987951	34990577	-	34985935	34990577	A3SS	ENSMUST00000134940.9	novel	0.43	10	13	10	13	y	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	35	0	35	n	0.25	7	21	7	21	y	0.00	0	3	0	3	n	0.28	9	23	9	23	y	0.00	0	15	0	15	n	0.00	0	24	0	24	n	0.00	0	49	0	49	n	0.05	1	20	1	20	n	0.13	7	46	7	46	n	ENSMUSG00000035875.16	AI182371	chr2	protein_coding	expressed sequence AI182371
novel_NIR_11482	chr2	34987951	34990577	-	34987951	34990867	A5SS	ENSMUST00000154817.2	novel	0.33	10	20	10	20	y	0.00	0	14	0	14	n	-	-	-	-	-	-	0.00	0	13	0	13	n	0.54	7	6	7	6	y	-	-	-	-	-	-	0.50	9	9	9	9	y	-	-	-	-	-	-	0.00	0	13	0	13	n	0.00	0	18	0	18	n	0.06	1	15	1	15	n	0.44	7	9	7	9	y	ENSMUSG00000035875.16	AI182371	chr2	protein_coding	expressed sequence AI182371
novel_NIR_11483	chr2	34988092	34990867	-	34987951	34990867	A3SS	ENSMUST00000154817.2	novel	0.70	46	20	46	20	y	0.78	51	14	51	14	y	-	-	-	-	-	-	0.81	57	13	57	13	y	0.89	49	6	49	6	y	1.00	4	0	4	0	y	0.81	38	9	38	9	y	1.00	4	0	4	0	y	0.80	53	13	53	13	y	0.72	46	18	46	18	y	0.85	87	15	87	15	y	0.84	49	9	49	9	y	ENSMUSG00000035875.16	AI182371	chr2	protein_coding	expressed sequence AI182371
novel_NIR_11484	chr2	34988092	34990867	-	34988092	34990577	5pMXE	ENSMUST00000226972.2	novel	0.10	46	402	46	402	n	0.17	51	241	51	241	y	0.00	0	143	0	143	n	0.09	57	544	57	544	n	0.08	49	560	49	560	n	0.04	4	104	4	104	n	0.08	38	446	38	446	n	0.02	4	216	4	216	n	0.12	53	372	53	372	n	0.08	46	509	46	509	n	0.22	87	311	87	311	y	0.08	49	559	49	559	n	ENSMUSG00000035875.16	AI182371	chr2	protein_coding	expressed sequence AI182371
novel_NIR_11485	chr2	34988095	34990867	-	34987951	34990867	A3SS	ENSMUST00000154817.2	novel	0.46	17	20	17	20	y	0.65	26	14	26	14	y	1.00	2	0	2	0	y	0.77	44	13	44	13	y	0.86	38	6	38	6	y	1.00	1	0	1	0	n	0.74	25	9	25	9	y	1.00	5	0	5	0	y	0.64	23	13	23	13	y	0.70	42	18	42	18	y	0.75	44	15	44	15	y	0.76	28	9	28	9	y	ENSMUSG00000035875.16	AI182371	chr2	protein_coding	expressed sequence AI182371
novel_NIR_11486	chr2	34989948	34990867	-	34987951	34990867	A3SS	ENSMUST00000154817.2	novel	0.00	0	20	0	20	n	0.00	0	14	0	14	n	-	-	-	-	-	-	0.07	1	13	1	13	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	13	0	13	n	0.00	0	18	0	18	n	0.06	1	15	1	15	n	0.31	4	9	4	9	y	ENSMUSG00000035875.16	AI182371	chr2	protein_coding	expressed sequence AI182371
novel_NIR_11487	chr2	34999716	35001567	+	34999641	35001567	A5SS	ENSMUST00000028235.11	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.33	2	4	2	4	y	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000057110.16	Cntrl	chr2	protein_coding	centriolin
novel_NIR_11488	chr2	35018049	35019627	+	35018049	35019633	A3SS	ENSMUST00000028235.11	novel	0.00	0	3	0	3	n	0.50	3	3	3	3	y	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	14	0	14	n	ENSMUSG00000057110.16	Cntrl	chr2	protein_coding	centriolin
novel_NIR_11489	chr2	35050673	35050785	+	35050673	35051941	A3SS	ENSMUST00000124081.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000057110.16	Cntrl	chr2	protein_coding	centriolin
novel_NIR_11490	chr2	35062055	35063035	+	35062055	35063029	A3SS	ENSMUST00000156933.8	novel	0.14	3	18	3	18	n	0.17	3	15	3	15	y	0.00	0	28	0	28	n	0.00	0	18	0	18	n	0.00	0	26	0	26	n	0.00	0	12	0	12	n	0.00	0	23	0	23	n	0.20	1	4	1	4	n	0.00	0	15	0	15	n	0.10	3	26	3	26	n	0.23	5	17	5	17	y	0.00	0	15	0	15	n	ENSMUSG00000057110.16	Cntrl	chr2	protein_coding	centriolin
novel_NIR_11491	chr2	35079993	35090772	-	35090021	35090772	3pMXE	ENSMUST00000126224.2	novel	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.45	5	6	5	6	y	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	ENSMUSG00000026878.18	Rab14	chr2	protein_coding	RAB14, member RAS oncogene family
novel_NIR_11492	chr2	35082691	35089457	-	35082691	35090693	A5SS	ENSMUST00000148543.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000026878.18	Rab14	chr2	protein_coding	RAB14, member RAS oncogene family
novel_NIR_11493	chr2	35082691	35089833	-	35082691	35090693	A5SS	ENSMUST00000148543.2	novel	1.00	9	0	9	0	y	1.00	6	0	6	0	y	1.00	10	0	10	0	y	1.00	21	0	21	0	y	0.92	23	2	23	2	y	1.00	9	0	9	0	y	1.00	27	0	27	0	y	1.00	5	0	5	0	y	1.00	8	0	8	0	y	1.00	26	0	26	0	y	1.00	14	0	14	0	y	0.95	21	1	21	1	y	ENSMUSG00000026878.18	Rab14	chr2	protein_coding	RAB14, member RAS oncogene family
novel_NIR_11494	chr2	35082691	35089833	-	35082691	35090772	A5SS	ENSMUST00000028238.15	novel	0.08	9	107	9	107	n	0.06	6	98	6	98	n	0.06	10	146	10	146	n	0.11	21	176	21	176	n	0.10	23	201	23	201	n	0.10	9	81	9	81	n	0.16	27	145	27	145	y	0.04	5	116	5	116	n	0.06	8	132	8	132	n	0.15	26	145	26	145	y	0.10	14	127	14	127	n	0.10	21	188	21	188	n	ENSMUSG00000026878.18	Rab14	chr2	protein_coding	RAB14, member RAS oncogene family
novel_NIR_11495	chr2	35082691	35089937	-	35082691	35090693	A5SS	ENSMUST00000148543.2	novel	1.00	7	0	7	0	y	1.00	8	0	8	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	0.78	7	2	7	2	y	1.00	1	0	1	0	n	1.00	15	0	15	0	y	1.00	8	0	8	0	y	1.00	6	0	6	0	y	1.00	7	0	7	0	y	1.00	5	0	5	0	y	0.94	15	1	15	1	y	ENSMUSG00000026878.18	Rab14	chr2	protein_coding	RAB14, member RAS oncogene family
novel_NIR_11496	chr2	35082691	35090307	-	35082691	35090693	A5SS	ENSMUST00000148543.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	2	0	2	0	y	0.67	2	1	2	1	y	ENSMUSG00000026878.18	Rab14	chr2	protein_coding	RAB14, member RAS oncogene family
novel_NIR_11497	chr2	35582481	35597660	+	35551637	35597660	A5SS	ENSMUST00000112986.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026883.18	Dab2ip	chr2	protein_coding	disabled 2 interacting protein
novel_NIR_11498	chr2	35582481	35597660	+	35551929	35597660	A5SS	ENSMUST00000138957.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026883.18	Dab2ip	chr2	protein_coding	disabled 2 interacting protein
novel_NIR_11499	chr2	35582481	35597660	+	35582386	35597660	A5SS	ENSMUST00000124098.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026883.18	Dab2ip	chr2	protein_coding	disabled 2 interacting protein
novel_NIR_11500	chr2	35582481	35597660	+	35582422	35597660	A5SS	ENSMUST00000065001.12	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	ENSMUSG00000026883.18	Dab2ip	chr2	protein_coding	disabled 2 interacting protein
novel_NIR_11501	chr2	35582481	35597660	+	35586819	35597660	5pMXE	ENSMUST00000112983.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026883.18	Dab2ip	chr2	protein_coding	disabled 2 interacting protein
novel_NIR_11502	chr2	3572091	3583595	+	3572091	3649265	A3SS	ENSMUST00000226435.2	novel	0.00	0	2	0	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000026655.16	Fam107b	chr2	protein_coding	family with sequence similarity 107, member B
novel_NIR_11503	chr2	36012950	36017227	-	36012950	36017137	A5SS	ENSMUST00000028251.10	novel	0.10	1	9	1	9	n	0.07	1	14	1	14	n	0.00	0	28	0	28	n	0.00	0	14	0	14	n	0.07	3	43	3	43	n	0.00	0	19	0	19	n	0.04	1	26	1	26	n	0.00	0	20	0	20	n	0.00	0	9	0	9	n	0.16	6	32	6	32	y	0.00	0	23	0	23	n	0.25	4	12	4	12	y	ENSMUSG00000026889.13	Rbm18	chr2	protein_coding	RNA binding motif protein 18
novel_NIR_11504	chr2	36012950	36017227	-	36012950	36017193	A5SS	ENSMUST00000134668.2	novel	0.33	1	2	1	2	n	1.00	1	0	1	0	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.86	6	1	6	1	y	0.00	0	6	0	6	n	1.00	4	0	4	0	y	ENSMUSG00000026889.13	Rbm18	chr2	protein_coding	RNA binding motif protein 18
novel_NIR_11505	chr2	36012950	36017227	-	36012950	36024147	A5SS	ENSMUST00000122456.8	novel	1.00	1	0	1	0	n	0.14	1	6	1	6	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.43	3	4	3	4	y	0.00	0	2	0	2	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	6	3	6	3	y	0.00	0	1	0	1	n	0.57	4	3	4	3	y	ENSMUSG00000026889.13	Rbm18	chr2	protein_coding	RNA binding motif protein 18
novel_NIR_11506	chr2	36024275	36026311	-	36024275	36026494	A5SS	ENSMUST00000028251.10	novel	0.12	2	14	2	14	n	0.00	0	15	0	15	n	0.02	1	45	1	45	n	0.00	0	20	0	20	n	0.03	1	29	1	29	n	0.03	1	29	1	29	n	0.02	1	40	1	40	n	0.19	5	21	5	21	y	0.00	0	25	0	25	n	0.03	1	30	1	30	n	0.00	0	18	0	18	n	0.17	6	29	6	29	y	ENSMUSG00000026889.13	Rbm18	chr2	protein_coding	RNA binding motif protein 18
novel_NIR_11507	chr2	36107745	36110573	+	36107286	36110573	A5SS	ENSMUST00000122948.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000087187.2	Gm13431	chr2	lncRNA	predicted gene 13431
novel_NIR_11508	chr2	36130966	36132842	+	36130966	36132775	A3SS	ENSMUST00000062069.6	novel	0.00	0	18	0	18	n	0.27	3	8	3	8	y	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.10	3	27	3	27	n	0.00	0	10	0	10	n	0.09	2	21	2	21	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.00	0	9	0	9	n	ENSMUSG00000047250.14	Ptgs1	chr2	protein_coding	prostaglandin-endoperoxide synthase 1
novel_NIR_11509	chr2	36134092	36135056	+	36133021	36135056	A5SS	ENSMUST00000062069.6	novel	0.00	0	21	0	21	n	0.00	0	11	0	11	n	0.00	0	19	0	19	n	0.00	0	13	0	13	n	0.00	0	42	0	42	n	0.00	0	11	0	11	n	0.04	1	22	1	22	n	0.16	3	16	3	16	y	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.00	0	18	0	18	n	0.00	0	6	0	6	n	ENSMUSG00000047250.14	Ptgs1	chr2	protein_coding	prostaglandin-endoperoxide synthase 1
novel_NIR_11510	chr2	3642435	3649265	+	3572091	3649265	A5SS	ENSMUST00000226435.2	novel	0.00	0	2	0	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000026655.16	Fam107b	chr2	protein_coding	family with sequence similarity 107, member B
novel_NIR_11511	chr2	3642435	3649265	+	3614975	3649265	A5SS	ENSMUST00000115052.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026655.16	Fam107b	chr2	protein_coding	family with sequence similarity 107, member B
novel_NIR_11512	chr2	3705992	3779455	+	3775006	3779455	5pMXE	ENSMUST00000176254.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026655.16	Fam107b	chr2	protein_coding	family with sequence similarity 107, member B
novel_NIR_11513	chr2	37319935	37320380	-	37319935	37320821	A5SS	ENSMUST00000053098.6	novel	0.29	2	5	2	5	y	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.20	2	8	2	8	y	0.17	1	5	1	5	n	0.00	0	6	0	6	n	ENSMUSG00000066798.4	Zbtb6	chr2	protein_coding	zinc finger and BTB domain containing 6
novel_NIR_11514	chr2	37433243	37437556	+	37433243	37445718	A3SS	ENSMUST00000061179.12	novel	0.06	2	32	2	32	n	0.00	0	13	0	13	n	0.07	3	39	3	39	n	0.00	0	32	0	32	n	0.07	3	41	3	41	n	0.06	1	15	1	15	n	0.09	2	20	2	20	n	0.23	3	10	3	10	y	0.00	0	15	0	15	n	0.03	1	32	1	32	n	0.05	1	21	1	21	n	0.00	0	32	0	32	n	ENSMUSG00000035437.16	Rabgap1	chr2	protein_coding	RAB GTPase activating protein 1
novel_NIR_11515	chr2	37460135	37470685	-	37375230	37470685	A3SS	ENSMUST00000183690.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000026915.17	Strbp	chr2	protein_coding	spermatid perinuclear RNA binding protein
novel_NIR_11516	chr2	37460135	37470685	-	37460135;37464932	37464843;37470685	ES	ENSMUST00000203861.2	novel	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0.0	3	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	ENSMUSG00000026915.17	Strbp	chr2	protein_coding	spermatid perinuclear RNA binding protein
novel_NIR_11517	chr2	37460135	37470685	-	37469761	37470685	3pMXE	ENSMUST00000204569.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000026915.17	Strbp	chr2	protein_coding	spermatid perinuclear RNA binding protein
novel_NIR_11518	chr2	37460873	37470685	-	37375230	37470685	A3SS	ENSMUST00000183690.8	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000026915.17	Strbp	chr2	protein_coding	spermatid perinuclear RNA binding protein
novel_NIR_11519	chr2	37460873	37470685	-	37464932	37470685	A3SS&ES	ENSMUST00000203861.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000026915.17	Strbp	chr2	protein_coding	spermatid perinuclear RNA binding protein
novel_NIR_11520	chr2	37460873	37470685	-	37469761	37470685	3pMXE	ENSMUST00000204569.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000026915.17	Strbp	chr2	protein_coding	spermatid perinuclear RNA binding protein
novel_NIR_11521	chr2	37470818	37471613	-	37470818	37476522	A5SS	ENSMUST00000183690.8	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.33	2	4	2	4	y	0.00	0	5	0	5	n	ENSMUSG00000026915.17	Strbp	chr2	protein_coding	spermatid perinuclear RNA binding protein
novel_NIR_11522	chr2	37537297	37552287	-	37537297	37547625	5pMXE	ENSMUST00000145808.8	novel	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000026915.17	Strbp	chr2	protein_coding	spermatid perinuclear RNA binding protein
novel_NIR_11523	chr2	37537297	37552287	-	37537297	37556365	A5SS	ENSMUST00000144206.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026915.17	Strbp	chr2	protein_coding	spermatid perinuclear RNA binding protein
novel_NIR_11524	chr2	37537297	37552287	-	37537297	37593679	A5SS	ENSMUST00000155237.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000026915.17	Strbp	chr2	protein_coding	spermatid perinuclear RNA binding protein
novel_NIR_11525	chr2	37851754	37893386	-	37851754	38049819	A5SS	ENSMUST00000130472.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000035392.18	Dennd1a	chr2	protein_coding	DENN/MADD domain containing 1A
novel_NIR_11526	chr2	38006771	38016541	-	37911478	38016541	A3SS	ENSMUST00000150896.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035392.18	Dennd1a	chr2	protein_coding	DENN/MADD domain containing 1A
novel_NIR_11527	chr2	38016660	38024341	-	38016660	38049819	A5SS	ENSMUST00000143095.8	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	ENSMUSG00000035392.18	Dennd1a	chr2	protein_coding	DENN/MADD domain containing 1A
novel_NIR_11528	chr2	38024455	38026938	-	38016660	38026938	A3SS	ENSMUST00000102787.10	novel	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	13	0	13	n	0.00	0	15	0	15	n	0.40	4	6	4	6	y	0.00	0	16	0	16	n	0.00	0	14	0	14	n	0.00	0	18	0	18	n	0.04	1	22	1	22	n	0.00	0	8	0	8	n	0.00	0	21	0	21	n	ENSMUSG00000035392.18	Dennd1a	chr2	protein_coding	DENN/MADD domain containing 1A
novel_NIR_11529	chr2	38172006	38177125	-	38133484	38177125	A3SS	ENSMUST00000102787.10	novel	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.20	2	8	2	8	y	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	ENSMUSG00000035392.18	Dennd1a	chr2	protein_coding	DENN/MADD domain containing 1A
novel_NIR_11530	chr2	38414103	38440565	+	38401991	38440565	A5SS	ENSMUST00000112895.8	novel	0.18	2	9	2	9	n	0.33	1	2	1	2	n	0.67	4	2	4	2	y	0.44	4	5	4	5	y	0.33	3	6	3	6	y	0.00	0	1	0	1	n	0.53	8	7	8	7	y	0.00	0	10	0	10	n	0.71	5	2	5	2	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.50	3	3	3	3	y	ENSMUSG00000026749.12	Nek6	chr2	protein_coding	NIMA (never in mitosis gene a)-related expressed kinase 6
novel_NIR_11531	chr2	38414103	38440565	+	38404670	38440565	A5SS	ENSMUST00000156726.2	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	4	0	4	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	8	0	8	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000026749.12	Nek6	chr2	protein_coding	NIMA (never in mitosis gene a)-related expressed kinase 6
novel_NIR_11532	chr2	38414103	38440565	+	38404876	38440565	A5SS	ENSMUST00000151683.8	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	4	0	4	0	y	0.60	3	2	3	2	y	0.00	0	1	0	1	n	1.00	8	0	8	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.75	3	1	3	1	y	ENSMUSG00000026749.12	Nek6	chr2	protein_coding	NIMA (never in mitosis gene a)-related expressed kinase 6
novel_NIR_11533	chr2	38630616	38632819	-	38630619	38632819	A3SS	ENSMUST00000112877.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.75	3	1	3	1	y	0.44	4	5	4	5	y	0.83	5	1	5	1	y	0.25	1	3	1	3	n	0.50	2	2	2	2	y	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.56	5	4	5	4	y	ENSMUSG00000063972.14	Nr6a1	chr2	protein_coding	nuclear receptor subfamily 6, group A, member 1
novel_NIR_11534	chr2	38937146	38937598	-	38931364	38937598	A3SS	ENSMUST00000153914.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026754.17	Golga1	chr2	protein_coding	golgi autoantigen, golgin subfamily a, 1
novel_NIR_11535	chr2	39101065	39111712	-	39101065	39115820	A5SS	ENSMUST00000204368.2	novel	0.25	3	9	3	9	y	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	16	0	16	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	ENSMUSG00000026753.6	Ppp6c	chr2	protein_coding	protein phosphatase 6, catalytic subunit
novel_NIR_11536	chr2	39101065	39114777	-	39101065	39115820	A5SS	ENSMUST00000204368.2	novel	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	16	0	16	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.20	2	8	2	8	y	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	ENSMUSG00000026753.6	Ppp6c	chr2	protein_coding	protein phosphatase 6, catalytic subunit
novel_NIR_11537	chr2	43494300	43521558	+	43494300	43495623	3pMXE	ENSMUST00000130968.2	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	1.00	17	0	17	0	y	0.80	8	2	8	2	y	0.94	33	2	33	2	y	0.82	14	3	14	3	y	0.64	9	5	9	5	y	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.96	43	2	43	2	y	0.00	0	1	0	1	n	0.85	17	3	17	3	y	ENSMUSG00000026866.17	Kynu	chr2	protein_coding	kynureninase
novel_NIR_11538	chr2	43494300	43561371	+	43494300	43495623	3pMXE	ENSMUST00000130968.2	novel	0.50	2	2	2	2	y	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.00	0	5	0	5	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000026866.17	Kynu	chr2	protein_coding	kynureninase
novel_NIR_11539	chr2	43521631	43547342	+	43521631	43524964	3pMXE	ENSMUST00000050511.7	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.12	2	15	2	15	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.29	2	5	2	5	y	0.00	0	10	0	10	n	ENSMUSG00000026866.17	Kynu	chr2	protein_coding	kynureninase
novel_NIR_11540	chr2	43521631	43572256	+	43521631	43524964	3pMXE	ENSMUST00000050511.7	novel	0.20	1	4	1	4	n	0.33	2	4	2	4	y	0.33	2	4	2	4	y	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	ENSMUSG00000026866.17	Kynu	chr2	protein_coding	kynureninase
novel_NIR_11541	chr2	43953846	43970320	-	43953846	43955246	5pMXE	ENSMUST00000139948.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000085089.2	Arhgap15os	chr2	lncRNA	Rho GTPase activating protein 15, opposite strand
novel_NIR_11542	chr2	44461295	44465320	-	44461295	44465455	A5SS	ENSMUST00000112810.8	novel	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.06	1	17	1	17	n	0.00	0	6	0	6	n	0.00	0	20	0	20	n	0.00	0	5	0	5	n	0.16	4	21	4	21	y	0.00	0	9	0	9	n	0.08	1	11	1	11	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	ENSMUSG00000036890.14	Gtdc1	chr2	protein_coding	glycosyltransferase-like domain containing 1
novel_NIR_11543	chr2	44525328	44600742	-	44525328	44715363	A5SS	ENSMUST00000130991.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036890.14	Gtdc1	chr2	protein_coding	glycosyltransferase-like domain containing 1
novel_NIR_11544	chr2	44646447	44681033	-	44646447	44715363	A5SS	ENSMUST00000112810.8	novel	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.08	1	12	1	12	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.00	0	17	0	17	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.15	2	11	2	11	y	ENSMUSG00000036890.14	Gtdc1	chr2	protein_coding	glycosyltransferase-like domain containing 1
novel_NIR_11545	chr2	44750338	44810523	-	44750338	44751498	5pMXE	ENSMUST00000112810.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000036890.14	Gtdc1	chr2	protein_coding	glycosyltransferase-like domain containing 1
novel_NIR_11546	chr2	44750338	44810523	-	44750338	44752114	5pMXE	ENSMUST00000146694.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000036890.14	Gtdc1	chr2	protein_coding	glycosyltransferase-like domain containing 1
novel_NIR_11547	chr2	44750338	44810523	-	44750338	44817154	A5SS	ENSMUST00000130991.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000036890.14	Gtdc1	chr2	protein_coding	glycosyltransferase-like domain containing 1
novel_NIR_11548	chr2	44750338	44810523	-	44750338	44817617	A5SS	ENSMUST00000148279.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000036890.14	Gtdc1	chr2	protein_coding	glycosyltransferase-like domain containing 1
novel_NIR_11549	chr2	46309810	46312643	-	46309821	46312643	A3SS	ENSMUST00000123911.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	2	4	2	4	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000086644.2	Gm13470	chr2	lncRNA	predicted gene 13470
novel_NIR_11550	chr2	4723103	4749030	+	4723103;4725375	4725292;4749030	ES	ENSMUST00000184139.8	novel	0.00	0	11.5	0	8;15	n	0.00	0	4.5	0	6;3	n	0.00	0	8.5	0	5;12	n	0.07	1	14.0	1	15;13	n	0.00	0	17.0	0	18;16	n	0.00	0	4.0	0	4;4	n	0.22	2	7.0	2	10;4	y	0.00	0	8.0	0	5;11	n	0.00	0	4.5	0	4;5	n	0.15	2	11.0	2	10;12	y	0.00	0	9.0	0	8;10	n	0.00	0	12.5	0	9;16	n	ENSMUSG00000048186.15	Bend7	chr2	protein_coding	BEN domain containing 7
novel_NIR_11551	chr2	4726910	4749030	+	4725375	4749030	A5SS	ENSMUST00000184139.8	novel	0.00	0	15	0	15	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	16	0	16	n	0.00	0	4	0	4	n	0.33	2	4	2	4	y	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	ENSMUSG00000048186.15	Bend7	chr2	protein_coding	BEN domain containing 7
novel_NIR_11552	chr2	47985768	48199997	-	48139903	48199997	A3SS&ES	ENSMUST00000127672.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000086353.2	Gm13481	chr2	lncRNA	predicted gene 13481
novel_NIR_11553	chr2	48908337	48963854	+	48908337	48976602	A3SS	ENSMUST00000112745.8	novel	0.08	1	11	1	11	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.15	2	11	2	11	y	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000036792.13	Mbd5	chr2	protein_coding	methyl-CpG binding domain protein 5
novel_NIR_11554	chr2	48908337	48963854	+	48908337	48989729	A3SS	ENSMUST00000127085.8	novel	0.17	1	5	1	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	2	1	2	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000036792.13	Mbd5	chr2	protein_coding	methyl-CpG binding domain protein 5
novel_NIR_11555	chr2	48973947	48976602	+	48908337	48976602	A5SS	ENSMUST00000112745.8	novel	0.00	0	11	0	11	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000036792.13	Mbd5	chr2	protein_coding	methyl-CpG binding domain protein 5
novel_NIR_11556	chr2	5006191	5006351	-	5006191	5008819	A5SS	ENSMUST00000102985.8	novel	0.54	7	6	7	6	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.62	5	3	5	3	y	0.45	5	6	5	6	y	1.00	1	0	1	0	n	0.20	1	4	1	4	n	1.00	2	0	2	0	y	0.50	2	2	2	2	y	0.80	4	1	4	1	y	0.50	1	1	1	1	n	0.75	3	1	3	1	y	ENSMUSG00000026669.15	Mcm10	chr2	protein_coding	minichromosome maintenance 10 replication initiation factor
novel_NIR_11557	chr2	5006191	5006407	-	5006191	5008819	A5SS	ENSMUST00000102985.8	novel	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	4	0	4	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000026669.15	Mcm10	chr2	protein_coding	minichromosome maintenance 10 replication initiation factor
novel_NIR_11558	chr2	50170374	50171115	-	50170670	50171115	A3SS&ES	ENSMUST00000147345.8	novel	0.22	2	7	2	7	y	0.06	1	15	1	15	n	0.10	2	19	2	19	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	1	0	1	n	0.06	1	17	1	17	n	0.00	0	18	0	18	n	0.00	0	11	0	11	n	0.00	0	18	0	18	n	0.10	1	9	1	9	n	0.33	2	4	2	4	y	ENSMUSG00000026766.17	Mmadhc	chr2	protein_coding	methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria
novel_NIR_11559	chr2	50186914	50197016	+	50186914	50245037	A3SS	ENSMUST00000138528.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	ENSMUSG00000085862.3	Gm13483	chr2	lncRNA	predicted gene 13483
novel_NIR_11560	chr2	50186914	50197016	+	50186914	50323107	A3SS	ENSMUST00000123699.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000085862.3	Gm13483	chr2	lncRNA	predicted gene 13483
novel_NIR_11561	chr2	50186941	50222893	+	50186941	50323107	A3SS	ENSMUST00000228816.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000085862.3	Gm13483	chr2	lncRNA	predicted gene 13483
novel_NIR_11562	chr2	50199554	50245037	+	50186914	50245037	A5SS	ENSMUST00000138528.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000085862.3	Gm13483	chr2	lncRNA	predicted gene 13483
novel_NIR_11563	chr2	50254231	50296023	+	50270602	50296023	5pMXE	ENSMUST00000227437.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000115545.2	Gm48908	chr2	lncRNA	predicted gene 48908
novel_NIR_11564	chr2	50254231	50323107	+	50186914	50323107	A5SS	ENSMUST00000123699.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000085862.3	Gm13483	chr2	lncRNA	predicted gene 13483
novel_NIR_11565	chr2	50254231	50323107	+	50186941	50323107	A5SS	ENSMUST00000228816.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000085862.3	Gm13483	chr2	lncRNA	predicted gene 13483
novel_NIR_11566	chr2	50260981	50296023	+	50270602	50296023	5pMXE	ENSMUST00000227437.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000115545.2	Gm48908	chr2	lncRNA	predicted gene 48908
novel_NIR_11567	chr2	50293440	50296023	+	50270602	50296023	A5SS	ENSMUST00000227437.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000115545.2	Gm48908	chr2	lncRNA	predicted gene 48908
novel_NIR_11568	chr2	50296528	50302447	+	50296532	50302447	A5SS	ENSMUST00000227437.2	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000115545.2	Gm48908	chr2	lncRNA	predicted gene 48908
novel_NIR_11569	chr2	50296532	50299264	+	50296532	50302447	A3SS	ENSMUST00000227437.2	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000115545.2	Gm48908	chr2	lncRNA	predicted gene 48908
novel_NIR_11570	chr2	5059527	5066962	-	5059527	5067670	A5SS	ENSMUST00000143809.2	novel	0.14	2	12	2	12	n	0.16	3	16	3	16	y	0.00	0	6	0	6	n	0.11	3	24	3	24	n	0.00	0	32	0	32	n	0.00	0	11	0	11	n	0.00	0	22	0	22	n	0.00	0	11	0	11	n	0.05	1	21	1	21	n	0.10	5	44	5	44	n	0.06	1	16	1	16	n	0.00	0	11	0	11	n	ENSMUSG00000026672.12	Optn	chr2	protein_coding	optineurin
novel_NIR_11571	chr2	5059527	5068526	-	5059527	5067670	A5SS&ES	ENSMUST00000143809.2	novel	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.25	2	6	2	6	y	0.00	0	24	0	24	n	0.00	0	32	0	32	n	0.00	0	11	0	11	n	0.04	1	22	1	22	n	0.08	1	11	1	11	n	0.00	0	21	0	21	n	0.00	0	44	0	44	n	0.00	0	16	0	16	n	0.08	1	11	1	11	n	ENSMUSG00000026672.12	Optn	chr2	protein_coding	optineurin
novel_NIR_11572	chr2	51819861	51824844	-	51819861	51822412	A5SS&ES	ENSMUST00000102768.8	novel	0.00	0	5	0	5	n	0.22	2	7	2	7	y	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.57	4	3	4	3	y	0.12	1	7	1	7	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	ENSMUSG00000036249.17	Rbm43	chr2	protein_coding	RNA binding motif protein 43
novel_NIR_11573	chr2	51819861	51824844	-	51819861;51822535	51822412;51824844	ES	ENSMUST00000102767.8	novel	0.00	0	4.0	0	5;3	n	0.31	2	4.5	2	7;2	y	0.00	0	6.0	0	5;7	n	0.00	0	9.5	0	13;6	n	0.00	0	5.5	0	8;3	n	0.00	0	3.0	0	5;1	n	0.00	0	7.0	0	6;8	n	0.00	0	3.5	0	6;1	n	0.50	4	4.0	4	3;5	y	0.13	1	6.5	1	7;6	n	0.00	0	4.5	0	6;3	n	0.00	0	10.5	0	8;13	n	ENSMUSG00000036249.17	Rbm43	chr2	protein_coding	RNA binding motif protein 43
novel_NIR_11574	chr2	51822531	51824844	-	51822531	51824947	A5SS	ENSMUST00000102768.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000036249.17	Rbm43	chr2	protein_coding	RNA binding motif protein 43
novel_NIR_11575	chr2	51822531	51824844	-	51822535	51824844	A3SS	ENSMUST00000102767.8	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.22	2	7	2	7	y	0.00	0	6	0	6	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.50	1	1	1	1	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.25	1	3	1	3	n	0.13	2	13	2	13	n	ENSMUSG00000036249.17	Rbm43	chr2	protein_coding	RNA binding motif protein 43
novel_NIR_11576	chr2	51967299	51968343	+	51967299	51968322	A3SS	ENSMUST00000112693.10	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000036202.17	Rif1	chr2	protein_coding	replication timing regulatory factor 1
novel_NIR_11577	chr2	52039709	52040979	-	52039709	52041376	A5SS	ENSMUST00000135200.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.29	2	5	2	5	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	n	ENSMUSG00000026950.19	Neb	chr2	protein_coding	nebulin
novel_NIR_11578	chr2	52040641	52041376	-	52039709	52041376	A3SS	ENSMUST00000135200.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	5	5	5	5	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026950.19	Neb	chr2	protein_coding	nebulin
novel_NIR_11579	chr2	52040641	52049489	-	52041468	52049489	A3SS&ES	ENSMUST00000135200.2	novel	1.00	9	0	9	0	y	0.83	5	1	5	1	y	0.60	3	2	3	2	y	1.00	3	0	3	0	y	0.50	3	3	3	3	y	-	-	-	-	-	-	0.29	4	10	4	10	y	0.50	1	1	1	1	n	0.83	5	1	5	1	y	0.88	7	1	7	1	y	1.00	3	0	3	0	y	0.80	4	1	4	1	y	ENSMUSG00000026950.19	Neb	chr2	protein_coding	nebulin
novel_NIR_11580	chr2	52040641	52049489	-	52047936	52049489	A3SS&ES	ENSMUST00000028320.14	novel	1.00	9	0	9	0	y	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	0.04	4	88	4	88	n	1.00	1	0	1	0	n	0.83	5	1	5	1	y	0.88	7	1	7	1	y	1.00	3	0	3	0	y	0.57	4	3	4	3	y	ENSMUSG00000026950.19	Neb	chr2	protein_coding	nebulin
novel_NIR_11581	chr2	52043160	52047844	-	52043160;52047395	52047303;52047844	ES	ENSMUST00000036934.12	novel	-	-	-	-	-	-	0.00	0	1.0	0	0;2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.27	12	32.0	12	7;57	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026950.19	Neb	chr2	protein_coding	nebulin
novel_NIR_11582	chr2	52043160	52047844	-	52047395	52047844	A3SS&ES	ENSMUST00000028320.14	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.17	12	57	12	57	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026950.19	Neb	chr2	protein_coding	nebulin
novel_NIR_11583	chr2	52043160	52049489	-	52041468	52049489	A3SS	ENSMUST00000135200.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000026950.19	Neb	chr2	protein_coding	nebulin
novel_NIR_11584	chr2	52043160	52049489	-	52047936	52049489	A3SS&ES	ENSMUST00000028320.14	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	88	0	88	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000026950.19	Neb	chr2	protein_coding	nebulin
novel_NIR_11585	chr2	52239495	52257416	-	52225127	52257416	A3SS	ENSMUST00000210179.2	novel	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	10	0	10	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	0.82	9	2	9	2	y	0.80	4	1	4	1	y	0.00	0	2	0	2	n	ENSMUSG00000026950.19	Neb	chr2	protein_coding	nebulin
novel_NIR_11586	chr2	52250405	52257416	-	52225127	52257416	A3SS	ENSMUST00000210179.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000026950.19	Neb	chr2	protein_coding	nebulin
novel_NIR_11587	chr2	52255751	52257416	-	52225127	52257416	A3SS	ENSMUST00000210179.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	6	0	6	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.75	6	2	6	2	y	0.50	1	1	1	1	n	0.33	1	2	1	2	n	ENSMUSG00000026950.19	Neb	chr2	protein_coding	nebulin
novel_NIR_11588	chr2	52257534	52268401	-	52225127	52268401	A3SS	ENSMUST00000209712.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000026950.19	Neb	chr2	protein_coding	nebulin
novel_NIR_11589	chr2	52258104	52268401	-	52225127	52268401	A3SS	ENSMUST00000209712.2	novel	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000026950.19	Neb	chr2	protein_coding	nebulin
novel_NIR_11590	chr2	52268740	52274594	+	52268530	52274594	A5SS	ENSMUST00000209682.2	novel	1.00	21	0	21	0	y	1.00	24	0	24	0	y	1.00	16	0	16	0	y	1.00	28	0	28	0	y	1.00	24	0	24	0	y	1.00	2	0	2	0	y	1.00	25	0	25	0	y	1.00	7	0	7	0	y	1.00	24	0	24	0	y	1.00	34	0	34	0	y	1.00	9	0	9	0	y	1.00	50	0	50	0	y	ENSMUSG00000086447.3	Gm13522	chr2	lncRNA	predicted gene 13522
novel_NIR_11591	chr2	52274763	52277573	+	52274763;52276562	52276426;52277573	ES	ENSMUST00000209682.2	novel	0.00	0	12.0	0	22;2	n	0.00	0	10.0	0	18;2	n	0.00	0	1.5	0	3;0	n	0.00	0	7.0	0	11;3	n	0.24	2	6.5	2	9;4	y	0.00	0	2.5	0	5;0	n	0.00	0	9.0	0	14;4	n	0.00	0	3.0	0	6;0	n	0.00	0	9.5	0	17;2	n	0.00	0	15.5	0	27;4	n	0.00	0	6.0	0	12;0	n	0.00	0	25.5	0	42;9	n	ENSMUSG00000086447.3	Gm13522	chr2	lncRNA	predicted gene 13522
novel_NIR_11592	chr2	52276562	52277472	+	52276562	52277573	A3SS	ENSMUST00000124622.2	novel	0.50	2	2	2	2	n	0.50	2	2	2	2	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.33	2	4	2	4	n	1.00	3	0	3	0	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	4	0	4	n	1.00	7	0	7	0	n	0.00	0	9	0	9	n	ENSMUSG00000086447.3	Gm13522	chr2	lncRNA	predicted gene 13522
novel_NIR_11593	chr2	52276562	52277472	+	52276562	52277573	A3SS	ENSMUST00000209682.2	novel	0.50	2	2	2	2	y	0.50	2	2	2	2	y	-	-	-	-	-	-	0.25	1	3	1	3	n	0.33	2	4	2	4	y	1.00	3	0	3	0	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	4	0	4	n	1.00	7	0	7	0	y	0.00	0	9	0	9	n	ENSMUSG00000086447.3	Gm13522	chr2	lncRNA	predicted gene 13522
novel_NIR_11594	chr2	52276562	52280124	+	52276562;52277627	52277573;52280124	ES	ENSMUST00000210632.2	novel	0.77	10	3.0	10	2;4	y	0.80	14	3.5	14	2;5	y	-	-	-	-	-	-	0.73	8	3.0	8	3;3	y	0.86	18	3.0	18	4;2	y	-	-	-	-	-	-	0.77	12	3.5	12	4;3	y	1.00	8	0.0	8	0;0	y	0.94	23	1.5	23	2;1	y	0.87	31	4.5	31	4;5	y	0.86	12	2.0	12	0;4	y	0.73	29	10.5	29	9;12	y	ENSMUSG00000086447.3	Gm13522	chr2	lncRNA	predicted gene 13522
novel_NIR_11595	chr2	52276562;52277510	52277472;52280124	+	52276562;52277627	52277573;52280124	MXE	ENSMUST00000210632.2	novel	0.25	1.0	3.0	2;0	2;4	n	0.22	1.0	3.5	2;0	2;5	n	-	-	-	-	-	-	0.14	0.5	3.0	1;0	3;3	n	0.25	1.0	3.0	2;0	4;2	n	1.00	2.5	0.0	3;2	0;0	y	0.00	0.0	3.5	0;0	4;3	n	-	-	-	-	-	-	0.25	0.5	1.5	1;0	2;1	n	0.00	0.0	4.5	0;0	4;5	n	0.64	3.5	2.0	7;0	0;4	n	0.00	0.0	10.5	0;0	9;12	n	ENSMUSG00000086447.3	Gm13522	chr2	lncRNA	predicted gene 13522
novel_NIR_11596	chr2	52276562;52277510	52277472;52280124	+	52276562;52279835	52277573;52280124	MXE	ENSMUST00000209682.2	novel	0.33	1.0	2.0	2;0	2;2	n	0.33	1.0	2.0	2;0	2;2	n	-	-	-	-	-	-	0.14	0.5	3.0	1;0	3;3	n	0.25	1.0	3.0	2;0	4;2	n	1.00	2.5	0.0	3;2	0;0	y	0.00	0.0	5.0	0;0	4;6	n	-	-	-	-	-	-	0.25	0.5	1.5	1;0	2;1	n	0.00	0.0	8.0	0;0	4;12	n	0.88	3.5	0.5	7;0	0;1	n	0.00	0.0	7.0	0;0	9;5	n	ENSMUSG00000086447.3	Gm13522	chr2	lncRNA	predicted gene 13522
novel_NIR_11597	chr2	52355690	52357256	-	52355690;52355925	52355906;52357256	ES	ENSMUST00000102760.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000017412.16	Cacnb4	chr2	protein_coding	calcium channel, voltage-dependent, beta 4 subunit
novel_NIR_11598	chr2	52355690	52357256	-	52355690;52357175	52357156;52357256	ES	ENSMUST00000178799.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000017412.16	Cacnb4	chr2	protein_coding	calcium channel, voltage-dependent, beta 4 subunit
novel_NIR_11599	chr2	52367823	52368208	-	52367823	52446214	A5SS	ENSMUST00000102761.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000017412.16	Cacnb4	chr2	protein_coding	calcium channel, voltage-dependent, beta 4 subunit
novel_NIR_11600	chr2	52367823	52368208	-	52367823	52448281	A5SS	ENSMUST00000102760.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000017412.16	Cacnb4	chr2	protein_coding	calcium channel, voltage-dependent, beta 4 subunit
novel_NIR_11601	chr2	52367823	52368208	-	52367823	52565740	A5SS	ENSMUST00000178799.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000017412.16	Cacnb4	chr2	protein_coding	calcium channel, voltage-dependent, beta 4 subunit
novel_NIR_11602	chr2	53035939	53036106	-	53035927	53036106	A3SS	ENSMUST00000076313.14	novel	0.19	12	52	12	52	y	0.16	4	21	4	21	y	0.32	22	46	22	46	y	0.16	11	58	11	58	y	0.27	28	75	28	75	y	0.30	17	39	17	39	y	0.14	12	71	12	71	n	0.25	10	30	10	30	y	0.14	7	43	7	43	n	0.21	15	57	15	57	y	0.29	17	42	17	42	y	0.30	23	53	23	53	y	ENSMUSG00000061136.17	Prpf40a	chr2	protein_coding	pre-mRNA processing factor 40A
novel_NIR_11603	chr2	5303912	5306303	-	5303912	5306307	A5SS	ENSMUST00000044009.14	novel	0.05	1	20	1	20	n	0.29	5	12	5	12	y	0.05	1	21	1	21	n	0.04	1	27	1	27	n	0.15	4	22	4	22	y	0.06	1	17	1	17	n	0.24	6	19	6	19	y	0.13	4	27	4	27	n	0.11	4	33	4	33	n	0.19	10	42	10	42	y	0.00	0	18	0	18	n	0.08	3	35	3	35	n	ENSMUSG00000039145.17	Camk1d	chr2	protein_coding	calcium/calmodulin-dependent protein kinase ID
novel_NIR_11604	chr2	53047929	53049570	-	53047929;53049328	53049275;53049570	ES	ENSMUST00000076313.14	novel	0.20	7	27.5	7	26;29	y	0.35	9	17.0	9	18;16	y	0.14	8	50.0	8	57;43	n	0.22	11	38.5	11	34;43	y	0.21	18	68.0	18	67;69	y	0.06	2	32.5	2	31;34	n	0.09	4	38.5	4	35;42	n	0.00	0	29.0	0	28;30	n	0.12	3	21.5	3	16;27	n	0.12	7	51.5	7	49;54	n	0.14	5	32.0	5	30;34	n	0.09	4	40.5	4	31;50	n	ENSMUSG00000061136.17	Prpf40a	chr2	protein_coding	pre-mRNA processing factor 40A
novel_NIR_11605	chr2	53067445	53079916	-	53067445	53078460	A5SS&ES	ENSMUST00000211712.3	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.20	1	4	1	4	n	0.33	2	4	2	4	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	ENSMUSG00000061136.17	Prpf40a	chr2	protein_coding	pre-mRNA processing factor 40A
novel_NIR_11606	chr2	53081892;53082800	53082666;53084296	+	53081892	53084296	cassetteExon	ENSMUST00000155517.2	novel	0.19	2.5	11	0;5	11	n	1.00	0.5	0	0;1	0	n	0.00	0.0	2	0;0	2	n	0.00	0.0	5	0;0	5	n	0.12	1.5	11	1;2	11	n	0.00	0.0	1	0;0	1	n	0.20	1.0	4	0;2	4	n	0.00	0.0	6	0;0	6	n	0.00	0.0	2	0;0	2	n	0.36	4.0	7	3;5	7	y	0.00	0.0	2	0;0	2	n	1.00	1.0	0	0;2	0	n	ENSMUSG00000026960.7	Arl6ip6	chr2	protein_coding	ADP-ribosylation factor-like 6 interacting protein 6
novel_NIR_11607	chr2	53082800	53084296	+	53081892	53084296	A5SS	ENSMUST00000155517.2	novel	0.31	5	11	5	11	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.15	2	11	2	11	n	0.00	0	1	0	1	n	0.33	2	4	2	4	y	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.42	5	7	5	7	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	ENSMUSG00000026960.7	Arl6ip6	chr2	protein_coding	ADP-ribosylation factor-like 6 interacting protein 6
novel_NIR_11608	chr2	53082800	53084296	+	53082534	53084296	A5SS	ENSMUST00000028336.7	novel	0.18	5	23	5	23	n	0.06	1	17	1	17	n	0.00	0	41	0	41	n	0.00	0	18	0	18	n	0.06	2	32	2	32	n	0.00	0	15	0	15	n	0.07	2	26	2	26	n	0.00	0	22	0	22	n	0.00	0	15	0	15	n	0.16	5	27	5	27	y	0.00	0	18	0	18	n	0.06	2	30	2	30	n	ENSMUSG00000026960.7	Arl6ip6	chr2	protein_coding	ADP-ribosylation factor-like 6 interacting protein 6
novel_NIR_11609	chr2	5449955	5718957	-	5449955;5570591	5570460;5718957	ES	ENSMUST00000044009.14	novel	0.19	2	8.5	2	16;1	y	0.00	0	6.0	0	11;1	n	0.00	0	4.0	0	8;0	n	0.00	0	12.0	0	23;1	n	0.00	0	19.0	0	34;4	n	0.00	0	9.5	0	19;0	n	0.00	0	9.5	0	19;0	n	0.00	0	11.0	0	21;1	n	0.00	0	15.0	0	30;0	n	0.00	0	16.5	0	33;0	n	0.00	0	2.0	0	3;1	n	0.00	0	17.5	0	34;1	n	ENSMUSG00000039145.17	Camk1d	chr2	protein_coding	calcium/calmodulin-dependent protein kinase ID
novel_NIR_11610	chr2	5449955	5718957	-	5570591	5718957	3pMXE	ENSMUST00000155927.2	novel	0.67	2	1	2	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000039145.17	Camk1d	chr2	protein_coding	calcium/calmodulin-dependent protein kinase ID
novel_NIR_11611	chr2	5570591	5574379	-	5570591	5680725	A5SS	ENSMUST00000114987.4	novel	0.10	1	9	1	9	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.09	1	10	1	10	n	0.22	2	7	2	7	n	0.45	5	6	5	6	y	0.08	1	11	1	11	n	0.20	4	16	4	16	y	0.00	0	10	0	10	n	0.38	8	13	8	13	n	0.25	1	3	1	3	n	0.17	3	15	3	15	y	ENSMUSG00000039145.17	Camk1d	chr2	protein_coding	calcium/calmodulin-dependent protein kinase ID
novel_NIR_11612	chr2	5570591	5574379	-	5570591	5681043	A5SS	ENSMUST00000130470.2	novel	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.33	2	4	2	4	y	0.42	5	7	5	7	n	0.14	1	6	1	6	n	0.27	4	11	4	11	y	0.00	0	9	0	9	n	0.35	8	15	8	15	n	0.20	1	4	1	4	n	0.23	3	10	3	10	y	ENSMUSG00000039145.17	Camk1d	chr2	protein_coding	calcium/calmodulin-dependent protein kinase ID
novel_NIR_11613	chr2	5570591	5574379	-	5570591	5718957	A5SS	ENSMUST00000044009.14	novel	0.50	1	1	1	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.33	2	4	2	4	y	1.00	5	0	5	0	y	1.00	1	0	1	0	n	0.80	4	1	4	1	y	-	-	-	-	-	-	1.00	8	0	8	0	y	0.50	1	1	1	1	n	0.75	3	1	3	1	y	ENSMUSG00000039145.17	Camk1d	chr2	protein_coding	calcium/calmodulin-dependent protein kinase ID
novel_NIR_11614	chr2	5570591	5678741	-	5570591	5681043	A5SS	ENSMUST00000130470.2	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.10	1	9	1	9	n	0.00	0	15	0	15	n	0.00	0	4	0	4	n	0.17	2	10	2	10	y	ENSMUSG00000039145.17	Camk1d	chr2	protein_coding	calcium/calmodulin-dependent protein kinase ID
novel_NIR_11615	chr2	5570591	5678741	-	5570591	5718957	A5SS	ENSMUST00000044009.14	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	ENSMUSG00000039145.17	Camk1d	chr2	protein_coding	calcium/calmodulin-dependent protein kinase ID
novel_NIR_11616	chr2	5570591	5680310	-	5570591	5680725	A5SS	ENSMUST00000114987.4	novel	0.10	1	9	1	9	n	0.25	1	3	1	3	n	0.33	1	2	1	2	n	0.23	3	10	3	10	y	0.12	1	7	1	7	n	0.00	0	6	0	6	n	0.08	1	11	1	11	n	0.11	2	16	2	16	n	0.29	4	10	4	10	y	0.19	3	13	3	13	y	0.00	0	3	0	3	n	0.29	6	15	6	15	y	ENSMUSG00000039145.17	Camk1d	chr2	protein_coding	calcium/calmodulin-dependent protein kinase ID
novel_NIR_11617	chr2	5570591	5680310	-	5570591	5681043	A5SS	ENSMUST00000130470.2	novel	0.20	1	4	1	4	n	0.50	1	1	1	1	n	0.33	1	2	1	2	n	0.50	3	3	3	3	y	0.20	1	4	1	4	n	0.00	0	7	0	7	n	0.14	1	6	1	6	n	0.15	2	11	2	11	y	0.31	4	9	4	9	y	0.17	3	15	3	15	y	0.00	0	4	0	4	n	0.38	6	10	6	10	y	ENSMUSG00000039145.17	Camk1d	chr2	protein_coding	calcium/calmodulin-dependent protein kinase ID
novel_NIR_11618	chr2	5570591	5680310	-	5570591	5718957	A5SS	ENSMUST00000044009.14	novel	0.50	1	1	1	1	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.75	3	1	3	1	y	0.20	1	4	1	4	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.67	2	1	2	1	y	1.00	4	0	4	0	y	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.86	6	1	6	1	y	ENSMUSG00000039145.17	Camk1d	chr2	protein_coding	calcium/calmodulin-dependent protein kinase ID
novel_NIR_11619	chr2	5570591;5574478	5574379;5680725	-	5570591	5680725	cassetteExon	ENSMUST00000114987.4	novel	0.05	0.5	9	1;0	9	n	0.00	0.0	3	0;0	3	n	0.20	0.5	2	0;1	2	n	0.05	0.5	10	1;0	10	n	0.22	2.0	7	2;2	7	y	0.29	2.5	6	5;0	6	n	0.04	0.5	11	1;0	11	n	0.11	2.0	16	4;0	16	n	0.00	0.0	10	0;0	10	n	0.28	5.0	13	8;2	13	y	0.14	0.5	3	1;0	3	n	0.09	1.5	15	3;0	15	n	ENSMUSG00000039145.17	Camk1d	chr2	protein_coding	calcium/calmodulin-dependent protein kinase ID
novel_NIR_11620	chr2	5808786	5812242	-	5808786;5809844	5809722;5812242	ES	ENSMUST00000043864.9	novel	0.15	24	133.0	24	115;151	y	0.20	34	133.5	34	134;133	y	0.10	18	159.0	18	169;149	n	0.17	26	131.0	26	133;129	y	0.11	19	158.0	19	149;167	n	0.06	6	97.5	6	114;81	n	0.12	21	153.0	21	175;131	n	0.12	13	93.0	13	86;100	n	0.14	16	96.0	16	95;97	n	0.16	31	167.0	31	168;166	y	0.18	27	125.5	27	132;119	y	0.18	32	142.5	32	132;153	y	ENSMUSG00000039128.14	Cdc123	chr2	protein_coding	cell division cycle 123
novel_NIR_11621	chr2	5808786	5812242	-	5809844	5812242	3pMXE	ENSMUST00000138312.8	novel	0.14	24	151	24	151	n	0.20	34	133	34	133	y	0.11	18	149	18	149	n	0.17	26	129	26	129	y	0.10	19	167	19	167	n	0.07	6	81	6	81	n	0.14	21	131	21	131	n	0.12	13	100	13	100	n	0.14	16	97	16	97	n	0.16	31	166	31	166	y	0.18	27	119	27	119	y	0.17	32	153	32	153	y	ENSMUSG00000039128.14	Cdc123	chr2	protein_coding	cell division cycle 123
novel_NIR_11622	chr2	58345781	58348897	-	58333628	58348897	A3SS	ENSMUST00000145495.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026836.16	Acvr1	chr2	protein_coding	activin A receptor, type 1
novel_NIR_11623	chr2	58397533	58427790	-	58397533;58406312	58406036;58427790	ES	ENSMUST00000090935.9	novel	0.00	0	0.5	0	0;1	n	0.40	1	1.5	1	3;0	n	0.00	0	3.0	0	2;4	n	0.00	0	1.0	0	0;2	n	0.67	2	1.0	2	0;2	y	0.40	1	1.5	1	0;3	n	0.00	0	1.5	0	0;3	n	0.00	0	2.5	0	0;5	n	0.00	0	3.0	0	1;5	n	0.00	0	2.5	0	0;5	n	0.00	0	2.5	0	2;3	n	0.00	0	0.5	0	0;1	n	ENSMUSG00000026836.16	Acvr1	chr2	protein_coding	activin A receptor, type 1
novel_NIR_11624	chr2	58397533	58427790	-	58406312	58427790	A3SS&ES	ENSMUST00000112601.9	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000026836.16	Acvr1	chr2	protein_coding	activin A receptor, type 1
novel_NIR_11625	chr2	58427885	58430513	-	58427885	58428332	5pMXE	ENSMUST00000126407.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026836.16	Acvr1	chr2	protein_coding	activin A receptor, type 1
novel_NIR_11626	chr2	58457540	58464350	+	58457540	58473316	A3SS	ENSMUST00000137007.2	novel	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	17	0	17	n	0.00	0	11	0	11	n	0.29	2	5	2	5	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.00	0	21	0	21	n	ENSMUSG00000026839.18	Upp2	chr2	protein_coding	uridine phosphorylase 2
novel_NIR_11627	chr2	58457540	58464350	+	58457540	58522677	A3SS	ENSMUST00000135737.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026839.18	Upp2	chr2	protein_coding	uridine phosphorylase 2
novel_NIR_11628	chr2	58457540	58464350	+	58457540	58645370	A3SS	ENSMUST00000071543.12	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026839.18	Upp2	chr2	protein_coding	uridine phosphorylase 2
novel_NIR_11629	chr2	5850196	5852932	+	5850196	5852919	A3SS	ENSMUST00000127116.7	novel	0.75	3	1	3	1	y	0.80	4	1	4	1	y	1.00	7	0	7	0	y	0.67	4	2	4	2	y	0.67	2	1	2	1	y	0.80	4	1	4	1	y	0.33	1	2	1	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.50	2	2	2	2	y	1.00	1	0	1	0	n	0.00	0	6	0	6	n	ENSMUSG00000025817.13	Nudt5	chr2	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 5
novel_NIR_11630	chr2	5850196	5852932	+	5850196	5858324	A3SS	ENSMUST00000194933.2	novel	1.00	3	0	3	0	y	1.00	4	0	4	0	y	0.78	7	2	7	2	y	1.00	4	0	4	0	y	0.67	2	1	2	1	y	1.00	4	0	4	0	y	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	2	1	2	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000025817.13	Nudt5	chr2	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 5
novel_NIR_11631	chr2	5850196	5852932	+	5850196	5859627	A3SS	ENSMUST00000026927.10	novel	0.08	3	35	3	35	n	0.15	4	22	4	22	y	0.07	7	96	7	96	n	0.08	4	46	4	46	n	0.05	2	42	2	42	n	0.06	4	65	4	65	n	0.02	1	49	1	49	n	0.00	0	37	0	37	n	0.00	0	32	0	32	n	0.04	2	44	2	44	n	0.03	1	35	1	35	n	0.00	0	40	0	40	n	ENSMUSG00000025817.13	Nudt5	chr2	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 5
novel_NIR_11632	chr2	58645274	58645370	+	58457540	58645370	A5SS	ENSMUST00000071543.12	novel	1.00	40	0	40	0	y	1.00	20	0	20	0	y	-	-	-	-	-	-	1.00	46	0	46	0	y	1.00	12	0	12	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	25	0	25	0	y	1.00	35	0	35	0	y	1.00	45	0	45	0	y	1.00	62	0	62	0	y	ENSMUSG00000026839.18	Upp2	chr2	protein_coding	uridine phosphorylase 2
novel_NIR_11633	chr2	58645434	58646876	+	58645434	58649795	A3SS	ENSMUST00000230627.2	novel	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	14	0	14	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	14	0	14	n	0.18	2	9	2	9	y	0.00	0	6	0	6	n	0.08	1	11	1	11	n	ENSMUSG00000026839.18	Upp2	chr2	protein_coding	uridine phosphorylase 2
novel_NIR_11634	chr2	58645434	58646876	+	58645434	58651821	A3SS	ENSMUST00000059102.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000026839.18	Upp2	chr2	protein_coding	uridine phosphorylase 2
novel_NIR_11635	chr2	58645434	58661433	+	58655370	58661433	5pMXE	ENSMUST00000128864.2	novel	1.00	7	0	7	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	8	0	8	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026839.18	Upp2	chr2	protein_coding	uridine phosphorylase 2
novel_NIR_11636	chr2	58649892	58653687	+	58649943	58653687	A5SS	ENSMUST00000230627.2	novel	0.17	5	25	5	25	y	0.07	1	13	1	13	n	-	-	-	-	-	-	0.06	2	31	2	31	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	28	0	28	n	0.05	2	36	2	36	n	0.08	2	22	2	22	n	0.03	2	67	2	67	n	ENSMUSG00000026839.18	Upp2	chr2	protein_coding	uridine phosphorylase 2
novel_NIR_11637	chr2	58649892	58653687	+	58651874	58653687	A5SS&ES	ENSMUST00000059102.13	novel	1.00	5	0	5	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	ENSMUSG00000026839.18	Upp2	chr2	protein_coding	uridine phosphorylase 2
novel_NIR_11638	chr2	58657300	58661433	+	58655370	58661433	A5SS	ENSMUST00000128864.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000026839.18	Upp2	chr2	protein_coding	uridine phosphorylase 2
novel_NIR_11639	chr2	58670160	58679669	+	58670160	58676580	A3SS&ES	ENSMUST00000229923.2	novel	0.17	4	20	4	20	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.23	3	10	3	10	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	7	0	7	n	-	-	-	-	-	-	0.40	4	6	4	6	y	0.00	0	8	0	8	n	0.23	3	10	3	10	y	0.29	6	15	6	15	n	ENSMUSG00000026839.18	Upp2	chr2	protein_coding	uridine phosphorylase 2
novel_NIR_11640	chr2	58670160	58679669	+	58670160	58681790	A3SS	ENSMUST00000071543.12	novel	0.40	4	6	4	6	y	-	-	-	-	-	-	-	-	-	-	-	-	0.21	3	11	3	11	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.15	4	22	4	22	y	0.00	0	13	0	13	n	0.25	3	9	3	9	y	0.18	6	28	6	28	y	ENSMUSG00000026839.18	Upp2	chr2	protein_coding	uridine phosphorylase 2
novel_NIR_11641	chr2	58670160	58680072	+	58670160	58676580	A3SS&ES	ENSMUST00000229923.2	novel	0.00	0	20	0	20	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	10	0	10	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	7	0	7	n	-	-	-	-	-	-	0.62	10	6	10	6	y	0.00	0	8	0	8	n	0.09	1	10	1	10	n	0.17	3	15	3	15	y	ENSMUSG00000026839.18	Upp2	chr2	protein_coding	uridine phosphorylase 2
novel_NIR_11642	chr2	58670160	58680072	+	58670160	58681790	A3SS	ENSMUST00000071543.12	novel	0.00	0	6	0	6	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	11	0	11	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.31	10	22	10	22	y	0.00	0	13	0	13	n	0.10	1	9	1	9	n	0.10	3	28	3	28	n	ENSMUSG00000026839.18	Upp2	chr2	protein_coding	uridine phosphorylase 2
novel_NIR_11643	chr2	58670160	58681793	+	58670160	58681790	A3SS	ENSMUST00000071543.12	novel	0.00	0	6	0	6	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	11	0	11	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	22	0	22	n	0.19	3	13	3	13	y	0.00	0	9	0	9	n	0.00	0	28	0	28	n	ENSMUSG00000026839.18	Upp2	chr2	protein_coding	uridine phosphorylase 2
novel_NIR_11644	chr2	58670160	58685357	+	58670160	58681790	3pMXE	ENSMUST00000071543.12	novel	0.14	1	6	1	6	n	1.00	5	0	5	0	y	-	-	-	-	-	-	0.00	0	11	0	11	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.15	4	22	4	22	y	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	28	0	28	n	ENSMUSG00000026839.18	Upp2	chr2	protein_coding	uridine phosphorylase 2
novel_NIR_11645	chr2	58670160;58679754	58679669;58680041	+	58670160;58676691	58676580;58680041	MXE	ENSMUST00000229923.2	novel	0.18	2.5	11.5	4;1	20;3	n	0.00	0.0	5.0	0;0	8;2	n	-	-	-	-	-	-	0.19	1.5	6.5	3;0	10;3	n	0.00	0.0	1.0	0;0	2;0	n	-	-	-	-	-	-	0.00	0.0	4.5	0;0	7;2	n	-	-	-	-	-	-	0.31	2.0	4.5	4;0	6;3	n	0.00	0.0	5.0	0;0	8;2	n	0.16	1.5	8.0	3;0	10;6	n	0.31	4.5	10.0	6;3	15;5	y	ENSMUSG00000026839.18	Upp2	chr2	protein_coding	uridine phosphorylase 2
novel_NIR_11646	chr2	58670171	58680041	+	58676691	58680041	A5SS&ES	ENSMUST00000229923.2	novel	0.79	11	3	11	3	y	0.75	6	2	6	2	y	-	-	-	-	-	-	0.62	5	3	5	3	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.50	3	3	3	3	y	0.67	4	2	4	2	y	0.50	6	6	6	6	y	0.72	13	5	13	5	y	ENSMUSG00000026839.18	Upp2	chr2	protein_coding	uridine phosphorylase 2
novel_NIR_11647	chr2	5869259	5871165	+	5869259;5871052	5871044;5871165	ES	ENSMUST00000026927.10	novel	0.14	3	19.0	3	15;23	n	0.00	0	19.5	0	17;22	n	0.14	5	30.5	5	25;36	n	0.00	0	15.5	0	14;17	n	0.09	3	32.0	3	27;37	n	0.19	4	17.5	4	13;22	y	0.00	0	22.0	0	18;26	n	0.00	0	14.0	0	11;17	n	0.07	1	13.5	1	10;17	n	0.07	1	14.0	1	10;18	n	0.00	0	12.5	0	10;15	n	0.00	0	28.0	0	20;36	n	ENSMUSG00000025817.13	Nudt5	chr2	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 5
novel_NIR_11648	chr2	5881812	5884404	-	5881812	5882499	5pMXE	ENSMUST00000132469.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.43	3	4	3	4	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.67	4	2	4	2	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	ENSMUSG00000025816.16	Sec61a2	chr2	protein_coding	Sec61, alpha subunit 2 (S. cerevisiae)
novel_NIR_11649	chr2	5881812	5884404	-	5881812	5882666	A5SS&ES	ENSMUST00000102981.10	novel	-	-	-	-	-	-	0.00	0	5	0	5	n	0.12	3	22	3	22	n	0.14	1	6	1	6	n	0.10	1	9	1	9	n	0.50	4	4	4	4	y	0.30	3	7	3	7	y	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	ENSMUSG00000025816.16	Sec61a2	chr2	protein_coding	Sec61, alpha subunit 2 (S. cerevisiae)
novel_NIR_11650	chr2	5881812	5887392	-	5881812	5882499	5pMXE	ENSMUST00000132469.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.43	3	4	3	4	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.33	1	2	1	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000025816.16	Sec61a2	chr2	protein_coding	Sec61, alpha subunit 2 (S. cerevisiae)
novel_NIR_11651	chr2	5882819	5884404	-	5882819	5884428	A5SS	ENSMUST00000026926.5	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025816.16	Sec61a2	chr2	protein_coding	Sec61, alpha subunit 2 (S. cerevisiae)
novel_NIR_11652	chr2	5882819	5884404	-	5882819	5887392	A5SS	ENSMUST00000102981.10	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	20	0	20	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.44	4	5	4	5	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	ENSMUSG00000025816.16	Sec61a2	chr2	protein_coding	Sec61, alpha subunit 2 (S. cerevisiae)
novel_NIR_11653	chr2	58991472	59096732	+	59060198	59096732	5pMXE	ENSMUST00000112577.8	novel	0.38	3	5	3	5	y	0.25	1	3	1	3	n	-	-	-	-	-	-	0.50	3	3	3	3	y	0.00	0	3	0	3	n	0.33	1	2	1	2	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.40	2	3	2	3	y	0.29	2	5	2	5	y	0.60	3	2	3	2	y	0.00	0	4	0	4	n	ENSMUSG00000026991.21	Pkp4	chr2	protein_coding	plakophilin 4
novel_NIR_11654	chr2	58991472	59096732	+	59096635	59096732	5pMXE	ENSMUST00000124725.2	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000026991.21	Pkp4	chr2	protein_coding	plakophilin 4
novel_NIR_11655	chr2	59045158	59060073	+	59045158	59045278	3pMXE	ENSMUST00000122888.8	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.20	2	8	2	8	y	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.25	2	6	2	6	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.36	4	7	4	7	y	0.33	4	8	4	8	y	0.08	1	11	1	11	n	ENSMUSG00000026991.21	Pkp4	chr2	protein_coding	plakophilin 4
novel_NIR_11656	chr2	59045158	59060073	+	59045158	59119562	A3SS	ENSMUST00000184332.8	novel	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.12	2	14	2	14	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.25	4	12	4	12	y	0.40	4	6	4	6	y	0.08	1	11	1	11	n	ENSMUSG00000026991.21	Pkp4	chr2	protein_coding	plakophilin 4
novel_NIR_11657	chr2	59045158	59135410	+	59045158	59045278	3pMXE	ENSMUST00000122888.8	novel	0.20	1	4	1	4	n	0.00	0	4	0	4	n	1.00	3	0	3	0	y	0.11	1	8	1	8	n	0.11	1	8	1	8	n	0.00	0	2	0	2	n	0.25	2	6	2	6	y	0.50	1	1	1	1	n	0.17	1	5	1	5	n	0.42	5	7	5	7	y	0.20	2	8	2	8	y	0.15	2	11	2	11	y	ENSMUSG00000026991.21	Pkp4	chr2	protein_coding	plakophilin 4
novel_NIR_11658	chr2	59045374	59096732	+	59060198	59096732	5pMXE	ENSMUST00000112577.8	novel	0.17	1	5	1	5	n	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.50	3	3	3	3	y	0.50	2	2	2	2	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.33	2	4	2	4	y	ENSMUSG00000026991.21	Pkp4	chr2	protein_coding	plakophilin 4
novel_NIR_11659	chr2	59045374	59096732	+	59096635	59096732	5pMXE	ENSMUST00000124725.2	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000026991.21	Pkp4	chr2	protein_coding	plakophilin 4
novel_NIR_11660	chr2	5907861	5908778	-	5907861	5908771	A5SS	ENSMUST00000095147.9	novel	0.00	0	40	0	40	n	0.13	5	34	5	34	n	0.22	2	7	2	7	y	0.00	0	58	0	58	n	0.21	9	34	9	34	y	0.05	1	21	1	21	n	0.12	4	30	4	30	n	0.00	0	20	0	20	n	0.11	8	68	8	68	n	0.12	9	63	9	63	n	0.17	7	35	7	35	y	0.19	15	65	15	65	y	ENSMUSG00000025815.14	Dhtkd1	chr2	protein_coding	dehydrogenase E1 and transketolase domain containing 1
novel_NIR_11661	chr2	59127209	59135410	+	59096844	59135410	A5SS	ENSMUST00000183625.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.12	1	7	1	7	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.50	3	3	3	3	y	0.00	0	8	0	8	n	ENSMUSG00000026991.21	Pkp4	chr2	protein_coding	plakophilin 4
novel_NIR_11662	chr2	59135535	59135649	+	59135541	59135649	A5SS	ENSMUST00000168631.8	novel	0.46	24	28	24	28	y	0.18	7	31	7	31	y	0.26	10	28	10	28	y	0.29	20	48	20	48	y	0.23	19	64	19	64	y	0.36	9	16	9	16	y	0.44	38	48	38	48	y	0.28	11	28	11	28	y	0.37	30	51	30	51	y	0.31	30	68	30	68	y	0.29	17	42	17	42	y	0.35	41	76	41	76	y	ENSMUSG00000026991.21	Pkp4	chr2	protein_coding	plakophilin 4
novel_NIR_11663	chr2	59135836	59138540	+	59135836	59138434	A3SS	ENSMUST00000112577.8	novel	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	11	0	11	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.20	1	4	1	4	n	0.20	2	8	2	8	y	ENSMUSG00000026991.21	Pkp4	chr2	protein_coding	plakophilin 4
novel_NIR_11664	chr2	59135836	59138740	+	59135836	59138434	A3SS	ENSMUST00000112577.8	novel	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	11	0	11	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	ENSMUSG00000026991.21	Pkp4	chr2	protein_coding	plakophilin 4
novel_NIR_11665	chr2	59135836	59138745	+	59135836	59138434	A3SS	ENSMUST00000112577.8	novel	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	11	0	11	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.33	2	4	2	4	y	0.00	0	8	0	8	n	ENSMUSG00000026991.21	Pkp4	chr2	protein_coding	plakophilin 4
novel_NIR_11666	chr2	5918462	5922484	-	5918462;5919705	5919621;5922484	ES	ENSMUST00000095147.9	novel	0.12	3	21.0	3	23;19	n	0.10	3	28.0	3	25;31	n	0.00	0	7.0	0	8;6	n	0.05	2	37.5	2	33;42	n	0.00	0	37.5	0	35;40	n	0.11	1	8.5	1	8;9	n	0.04	1	25.0	1	25;25	n	0.04	1	25.0	1	22;28	n	0.27	12	32.5	12	26;39	y	0.09	4	42.0	4	35;49	n	0.07	2	28.5	2	27;30	n	0.06	3	47.0	3	48;46	n	ENSMUSG00000025815.14	Dhtkd1	chr2	protein_coding	dehydrogenase E1 and transketolase domain containing 1
novel_NIR_11667	chr2	5929992	5934449	-	5928949	5934449	A3SS	ENSMUST00000095147.9	novel	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.14	1	6	1	6	n	0.00	0	13	0	13	n	0.13	2	13	2	13	n	0.00	0	4	0	4	n	0.09	1	10	1	10	n	0.00	0	20	0	20	n	0.00	0	11	0	11	n	0.17	3	15	3	15	y	ENSMUSG00000025815.14	Dhtkd1	chr2	protein_coding	dehydrogenase E1 and transketolase domain containing 1
novel_NIR_11668	chr2	5929992	5934449	-	5930078	5934449	A3SS	ENSMUST00000151649.2	novel	0.00	0	4	0	4	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.29	2	5	2	5	y	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.50	3	3	3	3	y	ENSMUSG00000025815.14	Dhtkd1	chr2	protein_coding	dehydrogenase E1 and transketolase domain containing 1
novel_NIR_11669	chr2	5932942	5934449	-	5928949	5934449	A3SS	ENSMUST00000095147.9	novel	0.44	4	5	4	5	y	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.15	2	11	2	11	y	0.33	3	6	3	6	y	0.00	0	13	0	13	n	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.20	5	20	5	20	y	0.00	0	11	0	11	n	0.17	3	15	3	15	y	ENSMUSG00000025815.14	Dhtkd1	chr2	protein_coding	dehydrogenase E1 and transketolase domain containing 1
novel_NIR_11670	chr2	5932942	5934449	-	5930078	5934449	A3SS	ENSMUST00000151649.2	novel	0.50	4	4	4	4	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.42	5	7	5	7	y	0.00	0	1	0	1	n	0.50	3	3	3	3	y	ENSMUSG00000025815.14	Dhtkd1	chr2	protein_coding	dehydrogenase E1 and transketolase domain containing 1
novel_NIR_11671	chr2	59477216	59529694	+	59477216	59529692	A3SS	ENSMUST00000112568.8	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	14	0	14	n	0.00	0	3	0	3	n	0.15	2	11	2	11	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	5	0	5	n	ENSMUSG00000035168.17	Tanc1	chr2	protein_coding	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
novel_NIR_11672	chr2	5957432	5962282	+	5956364	5962282	A5SS	ENSMUST00000060092.13	novel	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.25	4	12	4	12	n	0.67	4	2	4	2	y	0.18	2	9	2	9	n	0.33	1	2	1	2	n	0.00	0	10	0	10	n	0.25	3	9	3	9	y	0.00	0	10	0	10	n	0.22	2	7	2	7	y	0.00	0	5	0	5	n	0.10	1	9	1	9	n	ENSMUSG00000043241.15	Upf2	chr2	protein_coding	UPF2 regulator of nonsense transcripts homolog (yeast)
novel_NIR_11673	chr2	59601660	59602697	+	59601606	59602697	A5SS	ENSMUST00000112568.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	ENSMUSG00000035168.17	Tanc1	chr2	protein_coding	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
novel_NIR_11674	chr2	59708894	59712756	-	59708894	59712745	A5SS	ENSMUST00000028368.14	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.17	1	5	1	5	n	0.00	0	5	0	5	n	-	-	-	-	-	-	ENSMUSG00000026988.16	Wdsub1	chr2	protein_coding	WD repeat, SAM and U-box domain containing 1
novel_NIR_11675	chr2	59708894	59712756	-	59708894	59712822	A5SS	ENSMUST00000140475.3	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000026988.16	Wdsub1	chr2	protein_coding	WD repeat, SAM and U-box domain containing 1
novel_NIR_11676	chr2	59746243	59747698	-	59744539	59747698	A3SS	ENSMUST00000112550.8	novel	0.18	2	9	2	9	y	0.00	0	5	0	5	n	0.00	0	20	0	20	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	ENSMUSG00000026987.17	Baz2b	chr2	protein_coding	bromodomain adjacent to zinc finger domain, 2B
novel_NIR_11677	chr2	59754099	59755166	-	59754099	59755005	A5SS	ENSMUST00000112550.8	novel	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.80	4	1	4	1	y	0.00	0	8	0	8	n	0.11	1	8	1	8	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000026987.17	Baz2b	chr2	protein_coding	bromodomain adjacent to zinc finger domain, 2B
novel_NIR_11678	chr2	59788836	59792365	-	59788836	59790165	5pMXE	ENSMUST00000135722.2	novel	0.57	4	3	4	3	y	1.00	3	0	3	0	y	0.00	0	8	0	8	n	0.62	8	5	8	5	y	0.60	3	2	3	2	y	0.57	4	3	4	3	y	1.00	3	0	3	0	y	0.29	2	5	2	5	y	1.00	3	0	3	0	y	0.80	4	1	4	1	y	1.00	2	0	2	0	y	0.25	1	3	1	3	n	ENSMUSG00000026987.17	Baz2b	chr2	protein_coding	bromodomain adjacent to zinc finger domain, 2B
novel_NIR_11679	chr2	59788836	59792365	-	59788836;59790449	59790165;59792365	ES	ENSMUST00000112550.8	novel	0.57	4	3.0	4	3;3	y	0.75	3	1.0	3	0;2	y	0.00	0	6.5	0	8;5	n	0.67	8	4.0	8	5;3	y	0.60	3	2.0	3	2;2	y	0.73	4	1.5	4	3;0	y	0.75	3	1.0	3	0;2	y	0.25	2	6.0	2	5;7	y	0.67	3	1.5	3	0;3	y	0.89	4	0.5	4	1;0	y	1.00	2	0.0	2	0;0	y	0.40	1	1.5	1	3;0	n	ENSMUSG00000026987.17	Baz2b	chr2	protein_coding	bromodomain adjacent to zinc finger domain, 2B
novel_NIR_11680	chr2	59809045	59831850	-	59809051	59831850	A3SS	ENSMUST00000112550.8	novel	0.20	1	4	1	4	n	1.00	3	0	3	0	y	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000026987.17	Baz2b	chr2	protein_coding	bromodomain adjacent to zinc finger domain, 2B
novel_NIR_11681	chr2	59809045	59831850	-	59814314	59831850	A3SS&ES	ENSMUST00000137480.8	novel	0.17	1	5	1	5	n	0.75	3	1	3	1	y	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	ENSMUSG00000026987.17	Baz2b	chr2	protein_coding	bromodomain adjacent to zinc finger domain, 2B
novel_NIR_11682	chr2	60037307	60038463	-	60037307	60039366	A5SS	ENSMUST00000138089.2	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.33	2	4	2	4	y	0.00	0	4	0	4	n	ENSMUSG00000026987.17	Baz2b	chr2	protein_coding	bromodomain adjacent to zinc finger domain, 2B
novel_NIR_11683	chr2	60169885	60170497	-	60168707	60170497	A3SS	ENSMUST00000112533.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.27	3	8	3	8	y	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.12	1	7	1	7	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	ENSMUSG00000026980.16	Ly75	chr2	protein_coding	lymphocyte antigen 75
novel_NIR_11684	chr2	60672813	60711462	-	60672816	60711462	A3SS	ENSMUST00000164147.8	novel	0.00	0	7	0	7	n	0.25	1	3	1	3	n	0.00	0	28	0	28	n	0.40	2	3	2	3	y	0.00	0	21	0	21	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	ENSMUSG00000026970.17	Rbms1	chr2	protein_coding	RNA binding motif, single stranded interacting protein 1
novel_NIR_11685	chr2	60672816	60678498	-	60672816	60718352	A5SS	ENSMUST00000151846.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026970.17	Rbms1	chr2	protein_coding	RNA binding motif, single stranded interacting protein 1
novel_NIR_11686	chr2	60672816	60678498	-	60672816	60719334	A5SS	ENSMUST00000132529.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026970.17	Rbms1	chr2	protein_coding	RNA binding motif, single stranded interacting protein 1
novel_NIR_11687	chr2	61423552	61457247	+	61409099	61457247	A5SS	ENSMUST00000136688.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000064289.16	Tank	chr2	protein_coding	TRAF family member-associated Nf-kappa B activator
novel_NIR_11688	chr2	61474162	61474651	+	61474129	61474651	A5SS	ENSMUST00000112502.8	novel	0.00	0	31	0	31	n	0.00	0	35	0	35	n	0.00	0	87	0	87	n	0.04	2	43	2	43	n	0.04	3	65	3	65	n	0.00	0	47	0	47	n	0.15	9	51	9	51	y	0.02	1	50	1	50	n	0.00	0	40	0	40	n	0.02	1	65	1	65	n	0.04	2	45	2	45	n	0.02	1	51	1	51	n	ENSMUSG00000064289.16	Tank	chr2	protein_coding	TRAF family member-associated Nf-kappa B activator
novel_NIR_11689	chr2	61480632	61483700	+	61480632	61481771	A3SS&ES	ENSMUST00000141544.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000064289.16	Tank	chr2	protein_coding	TRAF family member-associated Nf-kappa B activator
novel_NIR_11690	chr2	61553105	61589094	+	61553105	61555990	3pMXE	ENSMUST00000139475.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000026914.16	Psmd14	chr2	protein_coding	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14
novel_NIR_11691	chr2	61553105	61589094	+	61553105	61581188	3pMXE	ENSMUST00000134658.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000026914.16	Psmd14	chr2	protein_coding	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14
novel_NIR_11692	chr2	61589192	61590980	+	61553192	61590980	A5SS	ENSMUST00000146051.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.33	1	2	1	2	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	5	0	5	0	y	ENSMUSG00000026914.16	Psmd14	chr2	protein_coding	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14
novel_NIR_11693	chr2	62217504	62241437	-	62217504	62242130	A5SS	ENSMUST00000149306.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035000.9	Dpp4	chr2	protein_coding	dipeptidylpeptidase 4
novel_NIR_11694	chr2	62367378	62371957	-	62367378	62372475	A5SS	ENSMUST00000102732.10	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000000392.18	Fap	chr2	protein_coding	fibroblast activation protein
novel_NIR_11695	chr2	62516352	62516690	+	62516352	62516621	A3SS	ENSMUST00000028257.3	novel	0.00	0	15	0	15	n	0.00	0	8	0	8	n	0.00	0	38	0	38	n	0.00	0	13	0	13	n	0.00	0	20	0	20	n	0.15	2	11	2	11	y	0.00	0	22	0	22	n	0.00	0	21	0	21	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	ENSMUSG00000026893.5	Gca	chr2	protein_coding	grancalcin
novel_NIR_11696	chr2	6327127	6341179	+	6327765	6341179	5pMXE	ENSMUST00000114937.8	novel	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.05	1	19	1	19	n	0.07	1	13	1	13	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.25	2	6	2	6	y	0.00	0	6	0	6	n	0.00	0	8	0	8	n	ENSMUSG00000039046.16	Usp6nl	chr2	protein_coding	USP6 N-terminal like
novel_NIR_11697	chr2	6399366	6404886	+	6399366	6405091	A3SS	ENSMUST00000114937.8	novel	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.07	2	28	2	28	n	0.09	1	10	1	10	n	0.00	0	21	0	21	n	0.00	0	5	0	5	n	0.00	0	16	0	16	n	0.17	3	15	3	15	y	0.00	0	8	0	8	n	0.00	0	16	0	16	n	0.25	2	6	2	6	y	0.00	0	18	0	18	n	ENSMUSG00000039046.16	Usp6nl	chr2	protein_coding	USP6 N-terminal like
novel_NIR_11698	chr2	6413820	6414807	+	6413820	6419744	A3SS	ENSMUST00000114937.8	novel	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	38	0	38	n	0.00	0	21	0	21	n	0.10	3	26	3	26	n	0.00	0	8	0	8	n	0.05	1	20	1	20	n	0.00	0	23	0	23	n	0.00	0	5	0	5	n	0.00	0	23	0	23	n	0.22	2	7	2	7	y	0.00	0	22	0	22	n	ENSMUSG00000039046.16	Usp6nl	chr2	protein_coding	USP6 N-terminal like
novel_NIR_11699	chr2	64743193	64745060	-	64743219	64745060	A3SS	ENSMUST00000149193.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	ENSMUSG00000026888.15	Grb14	chr2	protein_coding	growth factor receptor bound protein 14
novel_NIR_11700	chr2	64964151	64981323	-	64964151;64966890	64966689;64981323	ES	ENSMUST00000112429.9	novel	0.00	0	14.5	0	11;18	n	0.06	1	17.0	1	17;17	n	0.15	7	38.5	7	33;44	y	0.00	0	42.5	0	46;39	n	0.03	1	35.5	1	33;38	n	0.09	2	21.5	2	17;26	n	0.08	3	36.5	3	41;32	n	0.11	3	25.5	3	21;30	n	0.00	0	27.0	0	27;27	n	0.00	0	43.0	0	44;42	n	0.05	1	18.0	1	16;20	n	0.05	2	35.0	2	35;35	n	ENSMUSG00000034903.19	Cobll1	chr2	protein_coding	Cobl-like 1
novel_NIR_11701	chr2	65068426	65069850	+	65069405	65069850	5pMXE	ENSMUST00000137582.2	novel	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.29	2	5	2	5	y	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.43	3	4	3	4	y	-	-	-	-	-	-	0.25	3	9	3	9	y	0.29	2	5	2	5	y	0.40	2	3	2	3	y	0.00	0	3	0	3	n	ENSMUSG00000086881.2	Gm13594	chr2	lncRNA	predicted gene 13594
novel_NIR_11702	chr2	6565601	6620499	-	6612772	6620499	3pMXE	ENSMUST00000138347.9	novel	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.38	3	5	3	5	y	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	ENSMUSG00000002107.19	Celf2	chr2	protein_coding	CUGBP, Elav-like family member 2
novel_NIR_11703	chr2	67801100	67812087	+	67708236	67812087	A5SS	ENSMUST00000180887.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	0.98	197	4	197	4	y	1.00	2	0	2	0	y	0.91	29	3	29	3	y	0.98	106	2	106	2	y	1.00	18	0	18	0	y	0.98	48	1	48	1	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000034780.7	B3galt1	chr2	protein_coding	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1
novel_NIR_11704	chr2	67801775	67812087	+	67708236	67812087	A5SS	ENSMUST00000180887.2	novel	1.00	39	0	39	0	y	1.00	41	0	41	0	y	0.97	148	4	148	4	y	1.00	78	0	78	0	y	0.98	146	3	146	3	y	0.97	75	2	75	2	y	1.00	99	0	99	0	y	0.99	100	1	100	1	y	1.00	48	0	48	0	y	1.00	48	0	48	0	y	1.00	26	0	26	0	y	1.00	43	0	43	0	y	ENSMUSG00000034780.7	B3galt1	chr2	protein_coding	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1
novel_NIR_11705	chr2	67807350	67812087	+	67708236	67812087	A5SS	ENSMUST00000180887.2	novel	1.00	4	0	4	0	y	1.00	2	0	2	0	y	0.88	29	4	29	4	y	-	-	-	-	-	-	0.67	6	3	6	3	y	0.83	10	2	10	2	y	1.00	5	0	5	0	y	0.91	10	1	10	1	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	ENSMUSG00000034780.7	B3galt1	chr2	protein_coding	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1
novel_NIR_11706	chr2	67807378	67812087	+	67708236	67812087	A5SS	ENSMUST00000180887.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034780.7	B3galt1	chr2	protein_coding	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1
novel_NIR_11707	chr2	67810835	67812087	+	67708236	67812087	A5SS	ENSMUST00000180887.2	novel	1.00	4	0	4	0	y	1.00	2	0	2	0	y	0.95	73	4	73	4	y	-	-	-	-	-	-	0.88	21	3	21	3	y	0.91	21	2	21	2	y	1.00	24	0	24	0	y	0.89	8	1	8	1	y	1.00	9	0	9	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034780.7	B3galt1	chr2	protein_coding	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1
novel_NIR_11708	chr2	67812134	67833561	+	67812134	67903793	A3SS	ENSMUST00000180887.2	novel	0.26	10	28	10	28	y	0.45	21	26	21	26	y	0.28	123	310	123	310	y	0.17	15	71	15	71	y	0.15	28	155	28	155	y	0.29	55	135	55	135	y	0.15	24	131	24	131	y	0.15	28	161	28	161	y	0.16	6	31	6	31	y	0.14	6	37	6	37	n	0.26	10	28	10	28	y	0.00	0	44	0	44	n	ENSMUSG00000034780.7	B3galt1	chr2	protein_coding	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1
novel_NIR_11709	chr2	67812134	67858313	+	67812134	67903793	A3SS	ENSMUST00000180887.2	novel	0.07	2	28	2	28	n	0.21	7	26	7	26	y	0.16	61	310	61	310	n	0.05	4	71	4	71	n	0.08	14	155	14	155	n	0.18	29	135	29	135	n	0.07	10	131	10	131	n	0.10	17	161	17	161	n	0.09	3	31	3	31	n	0.03	1	37	1	37	n	0.18	6	28	6	28	y	0.04	2	44	2	44	n	ENSMUSG00000034780.7	B3galt1	chr2	protein_coding	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1
novel_NIR_11710	chr2	67858400	67948057	+	67935067	67948057	5pMXE	ENSMUST00000042456.4	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034780.7	B3galt1	chr2	protein_coding	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1
novel_NIR_11711	chr2	6789199	6877167	-	6726424	6877167	A3SS	ENSMUST00000183984.8	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.22	2	7	2	7	y	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	ENSMUSG00000002107.19	Celf2	chr2	protein_coding	CUGBP, Elav-like family member 2
novel_NIR_11712	chr2	68661384	68662323	-	68650658	68662323	A3SS	ENSMUST00000211183.2	novel	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000109667.2	Gm36231	chr2	lncRNA	predicted gene, 36231
novel_NIR_11713	chr2	68664112	68675566	-	68664079	68675566	A3SS	ENSMUST00000211183.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000109667.2	Gm36231	chr2	lncRNA	predicted gene, 36231
novel_NIR_11714	chr2	68674310	68675566	-	68664079	68675566	A3SS	ENSMUST00000211183.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000109667.2	Gm36231	chr2	lncRNA	predicted gene, 36231
novel_NIR_11715	chr2	69035522	69035933	-	69035522	69036408	A5SS	ENSMUST00000005365.15	novel	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	-	-	-	-	-	-	0.27	4	11	4	11	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	ENSMUSG00000005233.17	Spc25	chr2	protein_coding	SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)
novel_NIR_11716	chr2	69119820	69121365	-	69119820	69122285	A5SS	ENSMUST00000102710.10	novel	0.09	16	162	16	162	n	0.15	20	110	20	110	y	0.02	1	44	1	44	n	0.06	19	277	19	277	n	0.15	66	380	66	380	n	0.05	2	41	2	41	n	0.10	32	286	32	286	n	0.11	14	110	14	110	n	0.15	50	291	50	291	n	0.09	41	436	41	436	n	0.18	51	239	51	239	n	0.07	32	421	32	421	n	ENSMUSG00000027048.16	Abcb11	chr2	protein_coding	ATP-binding cassette, sub-family B (MDR/TAP), member 11
novel_NIR_11717	chr2	69159716	69169740	-	69159716	69159949	A5SS&ES	ENSMUST00000102709.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000027048.16	Abcb11	chr2	protein_coding	ATP-binding cassette, sub-family B (MDR/TAP), member 11
novel_NIR_11718	chr2	69159716	69172865	-	69159716	69159949	A5SS&ES	ENSMUST00000102709.8	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000027048.16	Abcb11	chr2	protein_coding	ATP-binding cassette, sub-family B (MDR/TAP), member 11
novel_NIR_11719	chr2	69171654	69172861	-	69160101	69172861	A3SS	ENSMUST00000102709.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000027048.16	Abcb11	chr2	protein_coding	ATP-binding cassette, sub-family B (MDR/TAP), member 11
novel_NIR_11720	chr2	69485978	69491380	+	69485978	69487241	A3SS&ES	ENSMUST00000112286.9	novel	0.00	0	23	0	23	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.00	0	18	0	18	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.18	3	14	3	14	y	0.00	0	6	0	6	n	0.00	0	12	0	12	n	ENSMUSG00000063145.11	Bbs5	chr2	protein_coding	Bardet-Biedl syndrome 5 (human)
novel_NIR_11721	chr2	69485978	69491380	+	69485978;69487336	69487241;69491380	ES	ENSMUST00000134659.8	novel	0.00	0	19.0	0	23;15	n	0.00	0	4.5	0	7;2	n	0.00	0	9.5	0	10;9	n	0.00	0	10.5	0	12;9	n	0.00	0	15.0	0	18;12	n	0.00	0	5.0	0	5;5	n	0.00	0	11.5	0	13;10	n	0.00	0	4.5	0	6;3	n	0.00	0	9.5	0	8;11	n	0.18	3	14.0	3	14;14	y	0.00	0	5.0	0	6;4	n	0.00	0	17.5	0	12;23	n	ENSMUSG00000063145.11	Bbs5	chr2	protein_coding	Bardet-Biedl syndrome 5 (human)
novel_NIR_11722	chr2	69485978	69491380	+	69487336	69491380	5pMXE	ENSMUST00000127806.2	novel	0.00	0	15	0	15	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.18	3	14	3	14	y	0.00	0	4	0	4	n	0.00	0	23	0	23	n	ENSMUSG00000063145.11	Bbs5	chr2	protein_coding	Bardet-Biedl syndrome 5 (human)
novel_NIR_11723	chr2	69491141	69491380	+	69487336	69491380	A5SS	ENSMUST00000134659.8	novel	0.00	0	15	0	15	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.40	2	3	2	3	y	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.00	0	4	0	4	n	0.04	1	23	1	23	n	ENSMUSG00000063145.11	Bbs5	chr2	protein_coding	Bardet-Biedl syndrome 5 (human)
novel_NIR_11724	chr2	69553301	69562541	+	69553301	69553854	3pMXE	ENSMUST00000153772.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000042133.17	Ppig	chr2	protein_coding	peptidyl-prolyl isomerase G (cyclophilin G)
novel_NIR_11725	chr2	69553301	69562541	+	69553301;69562157	69562090;69562541	ES	ENSMUST00000090858.10	novel	0.00	0	14.5	0	6;23	n	0.21	2	7.5	2	2;13	y	0.00	0	29.5	0	14;45	n	0.00	0	17.0	0	7;27	n	0.00	0	35.5	0	15;56	n	0.00	0	21.5	0	11;32	n	0.00	0	20.5	0	10;31	n	0.07	1	13.5	1	9;18	n	0.07	1	13.0	1	7;19	n	0.00	0	15.5	0	4;27	n	0.00	0	13.5	0	5;22	n	0.00	0	19.0	0	11;27	n	ENSMUSG00000042133.17	Ppig	chr2	protein_coding	peptidyl-prolyl isomerase G (cyclophilin G)
novel_NIR_11726	chr2	69553711	69562090	+	69553301	69562090	A5SS	ENSMUST00000090858.10	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.15	2	11	2	11	y	ENSMUSG00000042133.17	Ppig	chr2	protein_coding	peptidyl-prolyl isomerase G (cyclophilin G)
novel_NIR_11727	chr2	69553711	69562090	+	69553707	69562090	A5SS	ENSMUST00000040915.15	novel	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.00	0	14	0	14	n	0.15	2	11	2	11	y	ENSMUSG00000042133.17	Ppig	chr2	protein_coding	peptidyl-prolyl isomerase G (cyclophilin G)
novel_NIR_11728	chr2	69553711	69562090	+	69561924	69562090	A5SS&ES	ENSMUST00000125105.8	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	ENSMUSG00000042133.17	Ppig	chr2	protein_coding	peptidyl-prolyl isomerase G (cyclophilin G)
novel_NIR_11729	chr2	69592230	69606474	-	69592230;69602468	69602276;69606474	ES	ENSMUST00000094942.4	novel	0.40	1	1.5	1	2;1	n	1.00	2	0.0	2	0;0	y	0.00	0	0.5	0	0;1	n	1.00	1	0.0	1	0;0	n	0.00	0	1.0	0	1;1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	0.00	0	0.5	0	0;1	n	ENSMUSG00000070883.4	Ccdc173	chr2	protein_coding	coiled-coil domain containing 173
novel_NIR_11730	chr2	69824156	69829493	+	69824156	69829429	A3SS	ENSMUST00000126165.8	novel	0.00	0	3	0	3	n	0.67	2	1	2	1	y	0.50	1	1	1	1	n	0.00	0	6	0	6	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000044308.18	Ubr3	chr2	protein_coding	ubiquitin protein ligase E3 component n-recognin 3
novel_NIR_11731	chr2	69829562	69830600	+	69829562	69830802	A3SS	ENSMUST00000126165.8	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	6	0	6	n	ENSMUSG00000044308.18	Ubr3	chr2	protein_coding	ubiquitin protein ligase E3 component n-recognin 3
novel_NIR_11732	chr2	70920277	70924320	+	70920277	70929359	A3SS	ENSMUST00000064141.12	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	ENSMUSG00000041966.19	Dcaf17	chr2	protein_coding	DDB1 and CUL4 associated factor 17
novel_NIR_11733	chr2	70920277	70924542	+	70920277	70929359	A3SS	ENSMUST00000064141.12	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.75	3	1	3	1	y	-	-	-	-	-	-	0.25	1	3	1	3	n	0.50	1	1	1	1	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.33	2	4	2	4	y	0.60	3	2	3	2	y	0.60	3	2	3	2	y	ENSMUSG00000041966.19	Dcaf17	chr2	protein_coding	DDB1 and CUL4 associated factor 17
novel_NIR_11734	chr2	71283742	71292714	+	71283742	71331123	A3SS	ENSMUST00000124875.8	novel	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.30	3	7	3	7	y	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	ENSMUSG00000041921.17	Metap1d	chr2	protein_coding	methionyl aminopeptidase type 1D (mitochondrial)
novel_NIR_11735	chr2	71283742;71329740	71329587;71331123	+	71283742	71331123	cassetteExon	ENSMUST00000124875.8	novel	0.25	3.0	9	2;4	9	y	0.00	0.0	7	0;0	7	n	0.18	1.5	7	0;3	7	n	0.07	1.0	13	0;2	13	n	0.20	2.5	10	0;5	10	n	-	-	-	-	-	-	0.33	3.5	7	0;7	7	n	0.00	0.0	4	0;0	4	n	0.08	1.0	12	0;2	12	n	0.08	1.0	12	0;2	12	n	0.11	0.5	4	0;1	4	n	0.29	2.0	5	1;3	5	n	ENSMUSG00000041921.17	Metap1d	chr2	protein_coding	methionyl aminopeptidase type 1D (mitochondrial)
novel_NIR_11736	chr2	71329232	71331123	+	71283742	71331123	A5SS	ENSMUST00000124875.8	novel	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.22	2	7	2	7	y	0.00	0	13	0	13	n	0.09	1	10	1	10	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	ENSMUSG00000041921.17	Metap1d	chr2	protein_coding	methionyl aminopeptidase type 1D (mitochondrial)
novel_NIR_11737	chr2	71329740	71331123	+	71283742	71331123	A5SS	ENSMUST00000124875.8	novel	0.31	4	9	4	9	n	0.00	0	7	0	7	n	0.30	3	7	3	7	n	0.13	2	13	2	13	n	0.33	5	10	5	10	y	-	-	-	-	-	-	0.50	7	7	7	7	y	0.00	0	4	0	4	n	0.14	2	12	2	12	n	0.14	2	12	2	12	n	0.20	1	4	1	4	n	0.38	3	5	3	5	n	ENSMUSG00000041921.17	Metap1d	chr2	protein_coding	methionyl aminopeptidase type 1D (mitochondrial)
novel_NIR_11738	chr2	71342512	71343647	+	71342512	71344968	A3SS	ENSMUST00000123858.8	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	7	0	7	0	y	0.75	3	1	3	1	y	ENSMUSG00000041921.17	Metap1d	chr2	protein_coding	methionyl aminopeptidase type 1D (mitochondrial)
novel_NIR_11739	chr2	71342512	71343647	+	71342512	71352877	A3SS	ENSMUST00000124875.8	novel	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.27	3	8	3	8	y	0.00	0	1	0	1	n	0.42	5	7	5	7	y	0.18	2	9	2	9	y	0.00	0	4	0	4	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	7	0	7	0	y	0.60	3	2	3	2	y	ENSMUSG00000041921.17	Metap1d	chr2	protein_coding	methionyl aminopeptidase type 1D (mitochondrial)
novel_NIR_11740	chr2	71346144	71352793	+	71346144	71346242	3pMXE	ENSMUST00000148164.2	novel	-	-	-	-	-	-	1.00	5	0	5	0	y	0.00	0	3	0	3	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	0.00	0	1	0	1	n	1.00	5	0	5	0	y	ENSMUSG00000041921.17	Metap1d	chr2	protein_coding	methionyl aminopeptidase type 1D (mitochondrial)
novel_NIR_11741	chr2	71346144	71352793	+	71346144	71347393	3pMXE	ENSMUST00000138873.8	novel	0.00	0	3	0	3	n	0.62	5	3	5	3	y	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.40	2	3	2	3	y	-	-	-	-	-	-	0.50	2	2	2	2	y	0.40	2	3	2	3	y	-	-	-	-	-	-	1.00	5	0	5	0	y	ENSMUSG00000041921.17	Metap1d	chr2	protein_coding	methionyl aminopeptidase type 1D (mitochondrial)
novel_NIR_11742	chr2	71346144	71352855	+	71346144	71346242	3pMXE	ENSMUST00000148164.2	novel	1.00	11	0	11	0	y	1.00	5	0	5	0	y	0.80	12	3	12	3	y	1.00	4	0	4	0	y	1.00	13	0	13	0	y	1.00	6	0	6	0	y	1.00	9	0	9	0	y	1.00	10	0	10	0	y	1.00	6	0	6	0	y	1.00	6	0	6	0	y	0.88	7	1	7	1	y	1.00	10	0	10	0	y	ENSMUSG00000041921.17	Metap1d	chr2	protein_coding	methionyl aminopeptidase type 1D (mitochondrial)
novel_NIR_11743	chr2	71346144	71352855	+	71346144	71347393	3pMXE	ENSMUST00000138873.8	novel	0.79	11	3	11	3	y	0.62	5	3	5	3	y	1.00	12	0	12	0	y	0.67	4	2	4	2	y	0.81	13	3	13	3	y	0.67	6	3	6	3	y	0.75	9	3	9	3	y	1.00	10	0	10	0	y	0.75	6	2	6	2	y	0.67	6	3	6	3	y	1.00	7	0	7	0	y	1.00	10	0	10	0	y	ENSMUSG00000041921.17	Metap1d	chr2	protein_coding	methionyl aminopeptidase type 1D (mitochondrial)
novel_NIR_11744	chr2	71346144	71354146	+	71346144	71346242	3pMXE	ENSMUST00000148164.2	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000041921.17	Metap1d	chr2	protein_coding	methionyl aminopeptidase type 1D (mitochondrial)
novel_NIR_11745	chr2	71346144	71354146	+	71346144	71347393	3pMXE	ENSMUST00000138873.8	novel	0.40	2	3	2	3	y	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041921.17	Metap1d	chr2	protein_coding	methionyl aminopeptidase type 1D (mitochondrial)
novel_NIR_11746	chr2	71347496	71352877	+	71342512	71352877	A5SS	ENSMUST00000124875.8	novel	0.33	1	2	1	2	n	1.00	3	0	3	0	y	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.18	2	9	2	9	y	0.43	3	4	3	4	y	0.40	2	3	2	3	y	1.00	3	0	3	0	y	0.25	1	3	1	3	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	ENSMUSG00000041921.17	Metap1d	chr2	protein_coding	methionyl aminopeptidase type 1D (mitochondrial)
novel_NIR_11747	chr2	71703909	71705424	+	71703909	71705751	A3SS	ENSMUST00000152696.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000006494.12	Pdk1	chr2	protein_coding	pyruvate dehydrogenase kinase, isoenzyme 1
novel_NIR_11748	chr2	71703909	71705424	+	71703909	71710383	A3SS	ENSMUST00000156036.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000006494.12	Pdk1	chr2	protein_coding	pyruvate dehydrogenase kinase, isoenzyme 1
novel_NIR_11749	chr2	71705891	71707618	+	71705891	71707617	A3SS	ENSMUST00000129887.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	9	0	9	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000006494.12	Pdk1	chr2	protein_coding	pyruvate dehydrogenase kinase, isoenzyme 1
novel_NIR_11750	chr2	71716403	71717659	+	71716403	71719240	A3SS	ENSMUST00000156036.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000006494.12	Pdk1	chr2	protein_coding	pyruvate dehydrogenase kinase, isoenzyme 1
novel_NIR_11751	chr2	71726143	71730328	+	71726143	71726762	3pMXE	ENSMUST00000129427.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000006494.12	Pdk1	chr2	protein_coding	pyruvate dehydrogenase kinase, isoenzyme 1
novel_NIR_11752	chr2	71976437	71979008	-	71935115	71979008	A3SS	ENSMUST00000126462.2	novel	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	8	0	8	0	y	1.00	10	0	10	0	y	-	-	-	-	-	-	ENSMUSG00000085439.2	Rapgef4os1	chr2	lncRNA	Rap guanine nucleotide exchange factor (GEF) 4, opposite strand 1
novel_NIR_11753	chr2	72010125	72010264	+	72008643	72010264	A5SS	ENSMUST00000090826.12	novel	0.00	0	5	0	5	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	ENSMUSG00000049044.17	Rapgef4	chr2	protein_coding	Rap guanine nucleotide exchange factor (GEF) 4
novel_NIR_11754	chr2	72116945	72128532	+	72116199	72128532	A5SS	ENSMUST00000090824.12	novel	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.29	2	5	2	5	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	ENSMUSG00000004085.15	Map3k20	chr2	protein_coding	mitogen-activated protein kinase kinase kinase 20
novel_NIR_11755	chr2	72116945	72128532	+	72128382	72128532	5pMXE	ENSMUST00000144111.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000004085.15	Map3k20	chr2	protein_coding	mitogen-activated protein kinase kinase kinase 20
novel_NIR_11756	chr2	72195073	72202071	+	72195073;72198810	72198745;72202071	ES	ENSMUST00000090824.12	novel	0.00	0	3.5	0	4;3	n	0.00	0	7.5	0	8;7	n	0.00	0	7.0	0	6;8	n	0.00	0	14.0	0	13;15	n	0.00	0	10.0	0	9;11	n	0.00	0	3.0	0	2;4	n	0.00	0	24.0	0	15;33	n	0.00	0	6.0	0	6;6	n	0.24	2	6.5	2	7;6	y	0.00	0	14.0	0	11;17	n	0.00	0	8.5	0	8;9	n	0.00	0	12.5	0	14;11	n	ENSMUSG00000004085.15	Map3k20	chr2	protein_coding	mitogen-activated protein kinase kinase kinase 20
novel_NIR_11757	chr2	73043304	73043991	-	73043304	73048096	A5SS	ENSMUST00000133228.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027108.16	Ola1	chr2	protein_coding	Obg-like ATPase 1
novel_NIR_11758	chr2	73143057	73144304	+	73143057	73145781	A3SS	ENSMUST00000154158.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	2	2	2	2	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.60	3	2	3	2	y	0.00	0	2	0	2	n	1.00	9	0	9	0	y	ENSMUSG00000008226.15	Scrn3	chr2	protein_coding	secernin 3
novel_NIR_11759	chr2	73144405	73145776	+	73143057	73145776	A5SS	ENSMUST00000090811.11	novel	0.21	7	26	7	26	y	0.16	5	27	5	27	y	0.10	3	27	3	27	n	0.04	2	43	2	43	n	0.18	10	46	10	46	n	0.13	2	13	2	13	n	0.18	6	27	6	27	y	0.22	7	25	7	25	y	0.19	8	35	8	35	n	0.05	2	38	2	38	n	0.14	5	31	5	31	n	0.02	1	52	1	52	n	ENSMUSG00000008226.15	Scrn3	chr2	protein_coding	secernin 3
novel_NIR_11760	chr2	73145936	73148643	+	73145936	73149647	A3SS	ENSMUST00000154158.8	novel	0.00	0	4	0	4	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	ENSMUSG00000008226.15	Scrn3	chr2	protein_coding	secernin 3
novel_NIR_11761	chr2	73212652	73213176	-	73212652	73213139	A5SS	ENSMUST00000076463.12	novel	0.21	6	23	6	23	y	0.07	1	13	1	13	n	0.15	15	84	15	84	y	0.16	7	37	7	37	y	0.09	3	30	3	30	n	0.15	9	51	9	51	y	0.11	3	24	3	24	n	0.10	4	37	4	37	n	0.36	8	14	8	14	y	0.25	9	27	9	27	y	0.00	0	14	0	14	n	0.08	3	33	3	33	n	ENSMUSG00000041762.17	Gpr155	chr2	protein_coding	G protein-coupled receptor 155
novel_NIR_11762	chr2	73212652	73213176	-	73212652	73216609	A5SS	ENSMUST00000112044.8	novel	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	15	0	15	0	y	1.00	7	0	7	0	y	1.00	3	0	3	0	y	1.00	9	0	9	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	8	0	8	0	y	1.00	9	0	9	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000041762.17	Gpr155	chr2	protein_coding	G protein-coupled receptor 155
novel_NIR_11763	chr2	73249570	73249791	+	73247707	73249791	A5SS	ENSMUST00000144735.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000087176.2	D230022J07Rik	chr2	lncRNA	RIKEN cDNA D230022J07 gene
novel_NIR_11764	chr2	73415351;73417741	73417560;73419208	+	73415351	73419208	cassetteExon	ENSMUST00000147235.2	novel	0.08	2.0	22	2;2	22	n	0.03	0.5	19	1;0	19	n	0.00	0.0	6	0;0	6	n	0.06	1.5	22	2;1	22	n	0.00	0.0	27	0;0	27	n	0.00	0.0	9	0;0	9	n	0.12	2.5	18	1;4	18	n	0.04	0.5	12	0;1	12	n	0.16	3.5	18	3;4	18	y	0.02	0.5	27	1;0	27	n	0.00	0.0	21	0;0	21	n	0.00	0.0	13	0;0	13	n	ENSMUSG00000086382.2	Chrna1os	chr2	lncRNA	cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle), opposite strand
novel_NIR_11765	chr2	73417741	73419208	+	73415549	73419208	A5SS	ENSMUST00000125413.2	novel	1.00	2	0	2	0	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.80	4	1	4	1	y	0.20	1	4	1	4	n	1.00	4	0	4	0	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	ENSMUSG00000086382.2	Chrna1os	chr2	lncRNA	cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle), opposite strand
novel_NIR_11766	chr2	73427363	73427681	+	73427363	73429203	A3SS	ENSMUST00000149231.2	novel	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.38	3	5	3	5	y	0.00	0	6	0	6	n	0.00	0	5	0	5	n	ENSMUSG00000086544.2	Chn1os3	chr2	lncRNA	chimerin 1, opposite strand 3
novel_NIR_11767	chr2	73427363	73427681	+	73427363	73442802	A3SS	ENSMUST00000147420.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000086544.2	Chn1os3	chr2	lncRNA	chimerin 1, opposite strand 3
novel_NIR_11768	chr2	73427854	73429203	+	73427363	73429203	A5SS	ENSMUST00000149231.2	novel	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.29	2	5	2	5	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	ENSMUSG00000086544.2	Chn1os3	chr2	lncRNA	chimerin 1, opposite strand 3
novel_NIR_11769	chr2	75522716	75526166	-	75522716	75534708	A5SS	ENSMUST00000152371.2	novel	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.20	2	8	2	8	y	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	ENSMUSG00000015839.7	Nfe2l2	chr2	protein_coding	nuclear factor, erythroid derived 2, like 2
novel_NIR_11770	chr2	75608130	75609215	+	75608130	75609272	A3SS	ENSMUST00000135682.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	ENSMUSG00000086813.2	Gm13657	chr2	lncRNA	predicted gene 13657
novel_NIR_11771	chr2	75608130	75609218	+	75608130	75609272	A3SS	ENSMUST00000135682.2	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000086813.2	Gm13657	chr2	lncRNA	predicted gene 13657
novel_NIR_11772	chr2	75608130	75609228	+	75608130	75609272	A3SS	ENSMUST00000135682.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000086813.2	Gm13657	chr2	lncRNA	predicted gene 13657
novel_NIR_11773	chr2	75680384	75681838	+	75662855	75681838	A5SS	ENSMUST00000047232.14	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.17	2	10	2	10	y	0.00	0	19	0	19	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000042410.17	Agps	chr2	protein_coding	alkylglycerone phosphate synthase
novel_NIR_11774	chr2	75680384	75681838	+	75662935	75681838	A5SS	ENSMUST00000175646.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000042410.17	Agps	chr2	protein_coding	alkylglycerone phosphate synthase
novel_NIR_11775	chr2	76496151	76497671	-	76496154	76497671	A3SS	ENSMUST00000176815.2	novel	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.29	2	5	2	5	y	0.17	1	5	1	5	n	ENSMUSG00000002732.15	Fkbp7	chr2	protein_coding	FK506 binding protein 7
novel_NIR_11776	chr2	76496151	76502041	-	76496154	76502041	A3SS	ENSMUST00000002809.14	novel	0.14	1	6	1	6	n	0.33	5	10	5	10	y	0.09	2	20	2	20	n	0.00	0	8	0	8	n	0.25	6	18	6	18	y	0.33	2	4	2	4	y	0.05	1	18	1	18	n	0.06	1	15	1	15	n	0.10	1	9	1	9	n	0.00	0	7	0	7	n	0.20	3	12	3	12	y	0.07	1	14	1	14	n	ENSMUSG00000002732.15	Fkbp7	chr2	protein_coding	FK506 binding protein 7
novel_NIR_11777	chr2	76496151	76502041	-	76497786	76502041	A3SS&ES	ENSMUST00000176815.2	novel	0.20	1	4	1	4	n	0.62	5	3	5	3	y	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.75	6	2	6	2	y	1.00	2	0	2	0	y	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.50	3	3	3	3	y	0.25	1	3	1	3	n	ENSMUSG00000002732.15	Fkbp7	chr2	protein_coding	FK506 binding protein 7
novel_NIR_11778	chr2	76785432	76797398	-	76796258	76797398	3pMXE	ENSMUST00000123804.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000051747.16	Ttn	chr2	protein_coding	titin
novel_NIR_11779	chr2	76859774	76860150	-	76859774	76860911	A5SS	ENSMUST00000049544.14	novel	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.20	2	8	2	8	y	0.00	0	14	0	14	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	ENSMUSG00000044033.17	Ccdc141	chr2	protein_coding	coiled-coil domain containing 141
novel_NIR_11780	chr2	76872975	76873078	-	76872975	76875004	A5SS	ENSMUST00000049544.14	novel	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	ENSMUSG00000044033.17	Ccdc141	chr2	protein_coding	coiled-coil domain containing 141
novel_NIR_11781	chr2	76875129	76875644	-	76875129	76875950	A5SS	ENSMUST00000049544.14	novel	1.00	4	0	4	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	1.00	1	0	1	0	n	1.00	3	0	3	0	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000044033.17	Ccdc141	chr2	protein_coding	coiled-coil domain containing 141
novel_NIR_11782	chr2	76875129;76875730	76875644;76875950	-	76875129	76875950	cassetteExon	ENSMUST00000049544.14	novel	1.00	5.5	0	4;7	0	y	-	-	-	-	-	-	0.78	3.5	1	0;7	1	n	1.00	2.5	0	0;5	0	n	0.50	1.0	1	2;0	1	n	1.00	0.5	0	1;0	0	n	1.00	3.5	0	3;4	0	y	0.20	1.0	4	0;2	4	n	1.00	2.0	0	0;4	0	n	-	-	-	-	-	-	1.00	0.5	0	0;1	0	n	0.33	0.5	1	0;1	1	n	ENSMUSG00000044033.17	Ccdc141	chr2	protein_coding	coiled-coil domain containing 141
novel_NIR_11783	chr2	76875730	76875950	-	76875129	76875950	A3SS	ENSMUST00000049544.14	novel	1.00	7	0	7	0	n	-	-	-	-	-	-	0.88	7	1	7	1	y	1.00	5	0	5	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	4	0	4	0	n	0.33	2	4	2	4	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	ENSMUSG00000044033.17	Ccdc141	chr2	protein_coding	coiled-coil domain containing 141
novel_NIR_11784	chr2	76890025	76904696	-	76890025	76905180	A5SS	ENSMUST00000049544.14	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	ENSMUSG00000044033.17	Ccdc141	chr2	protein_coding	coiled-coil domain containing 141
novel_NIR_11785	chr2	76896202	76905180	-	76890025	76905180	A3SS	ENSMUST00000049544.14	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.22	4	14	4	14	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.17	1	5	1	5	n	ENSMUSG00000044033.17	Ccdc141	chr2	protein_coding	coiled-coil domain containing 141
novel_NIR_11786	chr2	77075430	77076517	-	77075430	77096020	A5SS	ENSMUST00000102660.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000042272.18	Sestd1	chr2	protein_coding	SEC14 and spectrin domains 1
novel_NIR_11787	chr2	77075430	77076517	-	77075430	77110899	A5SS	ENSMUST00000102659.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000042272.18	Sestd1	chr2	protein_coding	SEC14 and spectrin domains 1
novel_NIR_11788	chr2	77329025	77333884	-	77307189	77333884	A3SS	ENSMUST00000111830.9	novel	0.15	5	28	5	28	y	0.16	4	21	4	21	y	0.12	1	7	1	7	n	0.11	4	34	4	34	n	0.12	3	23	3	23	n	0.25	1	3	1	3	n	0.16	4	21	4	21	y	0.00	0	5	0	5	n	0.12	4	30	4	30	n	0.17	7	33	7	33	y	0.05	1	18	1	18	n	0.11	5	39	5	39	n	ENSMUSG00000027016.18	Zfp385b	chr2	protein_coding	zinc finger protein 385B
novel_NIR_11789	chr2	77329025	77333884	-	77311709	77333884	A3SS	ENSMUST00000145251.8	novel	0.62	5	3	5	3	y	0.50	4	4	4	4	y	1.00	1	0	1	0	n	0.44	4	5	4	5	y	0.50	3	3	3	3	y	1.00	1	0	1	0	n	0.40	4	6	4	6	y	-	-	-	-	-	-	0.33	4	8	4	8	y	0.41	7	10	7	10	y	0.17	1	5	1	5	n	0.62	5	3	5	3	y	ENSMUSG00000027016.18	Zfp385b	chr2	protein_coding	zinc finger protein 385B
novel_NIR_11790	chr2	77332369	77333884	-	77307189	77333884	A3SS	ENSMUST00000111830.9	novel	0.03	1	28	1	28	n	0.19	5	21	5	21	y	0.00	0	7	0	7	n	0.00	0	34	0	34	n	0.00	0	23	0	23	n	0.00	0	3	0	3	n	0.12	3	21	3	21	n	0.00	0	5	0	5	n	0.00	0	30	0	30	n	0.00	0	33	0	33	n	0.00	0	18	0	18	n	0.00	0	39	0	39	n	ENSMUSG00000027016.18	Zfp385b	chr2	protein_coding	zinc finger protein 385B
novel_NIR_11791	chr2	77332369	77333884	-	77311709	77333884	A3SS	ENSMUST00000145251.8	novel	0.25	1	3	1	3	n	0.56	5	4	5	4	y	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.33	3	6	3	6	y	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	ENSMUSG00000027016.18	Zfp385b	chr2	protein_coding	zinc finger protein 385B
novel_NIR_11792	chr2	77333222	77333884	-	77311709	77333884	A3SS	ENSMUST00000145251.8	novel	0.50	3	3	3	3	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.17	1	5	1	5	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	ENSMUSG00000027016.18	Zfp385b	chr2	protein_coding	zinc finger protein 385B
novel_NIR_11793	chr2	77334026	77349139	-	77334026	77349772	A5SS	ENSMUST00000111830.9	novel	0.00	0	19	0	19	n	0.00	0	21	0	21	n	0.00	0	2	0	2	n	0.00	0	23	0	23	n	0.00	0	22	0	22	n	0.00	0	6	0	6	n	0.08	2	23	2	23	n	0.23	3	10	3	10	y	0.19	3	13	3	13	y	0.00	0	32	0	32	n	0.00	0	28	0	28	n	0.00	0	32	0	32	n	ENSMUSG00000027016.18	Zfp385b	chr2	protein_coding	zinc finger protein 385B
novel_NIR_11794	chr2	77334026	77349139	-	77334026	77533400	A5SS	ENSMUST00000171063.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027016.18	Zfp385b	chr2	protein_coding	zinc finger protein 385B
novel_NIR_11795	chr2	77334026	77349139	-	77334026	77549795	A5SS	ENSMUST00000090766.12	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027016.18	Zfp385b	chr2	protein_coding	zinc finger protein 385B
novel_NIR_11796	chr2	77763107	77766781	-	77763107	77766937	A5SS	ENSMUST00000111824.8	novel	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.22	2	7	2	7	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	ENSMUSG00000027014.15	Cwc22	chr2	protein_coding	CWC22 spliceosome-associated protein
novel_NIR_11797	chr2	79199155	79199382	-	79199155	79201098	A5SS	ENSMUST00000156830.8	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	0.83	19	4	19	4	y	-	-	-	-	-	-	1.00	12	0	12	0	y	1.00	14	0	14	0	y	1.00	11	0	11	0	y	1.00	23	0	23	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000075256.10	Cerkl	chr2	protein_coding	ceramide kinase-like
novel_NIR_11798	chr2	79199155	79199382	-	79199155	79223287	A5SS	ENSMUST00000099974.10	novel	-	-	-	-	-	-	0.75	3	1	3	1	y	1.00	19	0	19	0	y	-	-	-	-	-	-	0.92	12	1	12	1	y	0.88	14	2	14	2	y	1.00	11	0	11	0	y	1.00	23	0	23	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000075256.10	Cerkl	chr2	protein_coding	ceramide kinase-like
novel_NIR_11799	chr2	79199155	79199386	-	79199155	79201098	A5SS	ENSMUST00000156830.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.80	16	4	16	4	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	4	0	4	0	y	1.00	9	0	9	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000075256.10	Cerkl	chr2	protein_coding	ceramide kinase-like
novel_NIR_11800	chr2	79199155	79199386	-	79199155	79223287	A5SS	ENSMUST00000099974.10	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	16	0	16	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	0.67	4	2	4	2	y	1.00	4	0	4	0	y	1.00	9	0	9	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000075256.10	Cerkl	chr2	protein_coding	ceramide kinase-like
novel_NIR_11801	chr2	79199155	79199421	-	79199155	79201098	A5SS	ENSMUST00000156830.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.60	6	4	6	4	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000075256.10	Cerkl	chr2	protein_coding	ceramide kinase-like
novel_NIR_11802	chr2	79199155	79199421	-	79199155	79223287	A5SS	ENSMUST00000099974.10	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	6	0	6	0	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000075256.10	Cerkl	chr2	protein_coding	ceramide kinase-like
novel_NIR_11803	chr2	80451584	80451892	+	80451584	80454670	A3SS	ENSMUST00000151204.2	novel	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.38	3	5	3	5	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	ENSMUSG00000027001.11	Dusp19	chr2	protein_coding	dual specificity phosphatase 19
novel_NIR_11804	chr2	80454704	80458875	+	80454704	80472969	A3SS	ENSMUST00000135305.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000026999.15	Nup35	chr2	protein_coding	nucleoporin 35
novel_NIR_11805	chr2	83609403	83612285	+	83609403	83612283	A3SS	ENSMUST00000028499.11	novel	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.15	3	17	3	17	y	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	21	0	21	n	ENSMUSG00000027087.12	Itgav	chr2	protein_coding	integrin alpha V
novel_NIR_11806	chr2	83634329	83636977	+	83633680	83636977	A5SS	ENSMUST00000131192.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.33	1	2	1	2	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.75	6	2	6	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000027087.12	Itgav	chr2	protein_coding	integrin alpha V
novel_NIR_11807	chr2	83636881	83636977	+	83633680	83636977	A5SS	ENSMUST00000131192.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000027087.12	Itgav	chr2	protein_coding	integrin alpha V
novel_NIR_11808	chr2	84264765	84267785	-	84264765	84274354	A5SS	ENSMUST00000111722.8	novel	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.25	1	3	1	3	n	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	ENSMUSG00000027082.16	Tfpi	chr2	protein_coding	tissue factor pathway inhibitor
novel_NIR_11809	chr2	84282939	84288367	-	84282939	84288440	A5SS	ENSMUST00000144775.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027082.16	Tfpi	chr2	protein_coding	tissue factor pathway inhibitor
novel_NIR_11810	chr2	84282939	84288367	-	84282939;84284341	84284144;84288367	ES	ENSMUST00000111722.8	novel	0.13	1	6.5	1	9;4	n	0.00	0	6.0	0	5;7	n	0.19	2	8.5	2	9;8	y	0.00	0	5.5	0	6;5	n	0.00	0	8.0	0	7;9	n	0.00	0	5.5	0	4;7	n	0.00	0	10.5	0	11;10	n	0.00	0	2.0	0	3;1	n	0.00	0	1.5	0	2;1	n	0.00	0	6.0	0	2;10	n	0.00	0	2.5	0	1;4	n	0.00	0	8.0	0	5;11	n	ENSMUSG00000027082.16	Tfpi	chr2	protein_coding	tissue factor pathway inhibitor
novel_NIR_11811	chr2	84433244	84433532	-	84433244	84433993	A5SS	ENSMUST00000111670.9	novel	0.00	0	9	0	9	n	0.17	2	10	2	10	y	0.29	5	12	5	12	y	0.00	0	14	0	14	n	0.00	0	24	0	24	n	0.00	0	15	0	15	n	0.04	1	25	1	25	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.05	1	19	1	19	n	0.13	2	13	2	13	n	0.07	1	13	1	13	n	ENSMUSG00000034101.15	Ctnnd1	chr2	protein_coding	catenin (cadherin associated protein), delta 1
novel_NIR_11812	chr2	84433244	84433532	-	84433247	84433532	A3SS	ENSMUST00000111696.8	novel	0.00	0	7	0	7	n	0.22	2	7	2	7	y	0.26	5	14	5	14	y	0.00	0	12	0	12	n	0.00	0	19	0	19	n	0.00	0	8	0	8	n	0.09	1	10	1	10	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.08	1	12	1	12	n	0.25	2	6	2	6	y	0.07	1	13	1	13	n	ENSMUSG00000034101.15	Ctnnd1	chr2	protein_coding	catenin (cadherin associated protein), delta 1
novel_NIR_11813	chr2	84433615	84433993	-	84433244	84433993	A3SS	ENSMUST00000111670.9	novel	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.14	4	24	4	24	n	0.00	0	15	0	15	n	0.04	1	25	1	25	n	0.31	4	9	4	9	y	0.00	0	10	0	10	n	0.00	0	19	0	19	n	0.13	2	13	2	13	n	0.07	1	13	1	13	n	ENSMUSG00000034101.15	Ctnnd1	chr2	protein_coding	catenin (cadherin associated protein), delta 1
novel_NIR_11814	chr2	84433615	84433993	-	84433618	84433993	A3SS	ENSMUST00000111696.8	novel	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	21	0	21	n	0.00	0	14	0	14	n	0.13	4	26	4	26	n	0.00	0	9	0	9	n	0.04	1	23	1	23	n	0.17	4	19	4	19	y	0.00	0	18	0	18	n	0.00	0	20	0	20	n	0.10	2	19	2	19	n	0.05	1	19	1	19	n	ENSMUSG00000034101.15	Ctnnd1	chr2	protein_coding	catenin (cadherin associated protein), delta 1
novel_NIR_11815	chr2	84454902	84459604	-	84454902	84456364	A5SS&ES	ENSMUST00000111696.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000034101.15	Ctnnd1	chr2	protein_coding	catenin (cadherin associated protein), delta 1
novel_NIR_11816	chr2	84532798	84544822	-	84541816	84544822	3pMXE	ENSMUST00000138171.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000034075.11	Zdhhc5	chr2	protein_coding	zinc finger, DHHC domain containing 5
novel_NIR_11817	chr2	84541816	84542993	-	84541816	84543847	A5SS	ENSMUST00000125690.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034075.11	Zdhhc5	chr2	protein_coding	zinc finger, DHHC domain containing 5
novel_NIR_11818	chr2	84541816	84542993	-	84541816	84544822	A5SS	ENSMUST00000138171.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	4	2	4	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000034075.11	Zdhhc5	chr2	protein_coding	zinc finger, DHHC domain containing 5
novel_NIR_11819	chr2	84596171	84600118	-	84596374	84600118	A3SS	ENSMUST00000111641.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000023224.13	Serping1	chr2	protein_coding	serine (or cysteine) peptidase inhibitor, clade G, member 1
novel_NIR_11820	chr2	84597727	84600118	-	84596374	84600118	A3SS	ENSMUST00000111641.2	novel	-	-	-	-	-	-	1.00	103	0	103	0	y	1.00	145	0	145	0	y	-	-	-	-	-	-	0.98	198	5	198	5	y	-	-	-	-	-	-	1.00	25	0	25	0	y	1.00	131	0	131	0	y	0.00	0	2	0	2	n	1.00	143	0	143	0	y	0.98	125	2	125	2	y	1.00	137	0	137	0	y	ENSMUSG00000023224.13	Serping1	chr2	protein_coding	serine (or cysteine) peptidase inhibitor, clade G, member 1
novel_NIR_11821	chr2	84681940	84683012	+	84680536	84683012	A5SS	ENSMUST00000121114.8	novel	0.50	2	2	2	2	y	0.40	2	3	2	3	y	0.00	0	42	0	42	n	0.33	6	12	6	12	y	0.04	1	25	1	25	n	0.06	1	17	1	17	n	0.27	6	16	6	16	y	0.05	1	19	1	19	n	0.30	3	7	3	7	y	0.50	7	7	7	7	y	0.33	3	6	3	6	y	0.17	2	10	2	10	y	ENSMUSG00000027075.17	Slc43a1	chr2	protein_coding	solute carrier family 43, member 1
novel_NIR_11822	chr2	84687781	84690035	+	84687781	84690033	A3SS	ENSMUST00000121114.8	novel	0.00	0	19	0	19	n	0.00	0	14	0	14	n	0.00	0	41	0	41	n	0.00	0	18	0	18	n	0.00	0	31	0	31	n	0.00	0	24	0	24	n	0.00	0	24	0	24	n	0.00	0	29	0	29	n	0.15	3	17	3	17	y	0.00	0	26	0	26	n	0.00	0	17	0	17	n	0.00	0	15	0	15	n	ENSMUSG00000027075.17	Slc43a1	chr2	protein_coding	solute carrier family 43, member 1
novel_NIR_11823	chr2	84766988	84767831	+	84766988	84767867	A3SS	ENSMUST00000130278.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000027074.15	Slc43a3	chr2	protein_coding	solute carrier family 43, member 3
novel_NIR_11824	chr2	84766988	84767831	+	84766988	84767906	A3SS	ENSMUST00000138719.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027074.15	Slc43a3	chr2	protein_coding	solute carrier family 43, member 3
novel_NIR_11825	chr2	84767193	84767831	+	84767193	84767867	A3SS	ENSMUST00000090726.6	novel	0.14	1	6	1	6	n	-	-	-	-	-	-	0.09	3	29	3	29	n	0.10	1	9	1	9	n	0.00	0	13	0	13	n	0.00	0	18	0	18	n	0.08	1	12	1	12	n	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.25	2	6	2	6	y	ENSMUSG00000027074.15	Slc43a3	chr2	protein_coding	solute carrier family 43, member 3
novel_NIR_11826	chr2	84767193	84767831	+	84767193	84767906	A3SS	ENSMUST00000141650.8	novel	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.43	3	4	3	4	y	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.33	2	4	2	4	y	ENSMUSG00000027074.15	Slc43a3	chr2	protein_coding	solute carrier family 43, member 3
novel_NIR_11827	chr2	84780535	84780769	+	84780535	84780765	A3SS	ENSMUST00000090726.6	novel	0.18	6	28	6	28	y	0.00	0	28	0	28	n	0.00	0	63	0	63	n	0.00	0	25	0	25	n	0.09	4	40	4	40	n	0.05	2	37	2	37	n	0.00	0	47	0	47	n	0.00	0	22	0	22	n	0.00	0	20	0	20	n	0.00	0	32	0	32	n	0.00	0	21	0	21	n	0.03	1	32	1	32	n	ENSMUSG00000027074.15	Slc43a3	chr2	protein_coding	solute carrier family 43, member 3
novel_NIR_11828	chr2	84878479	84881205	+	84878479	84881209	A3SS	ENSMUST00000139915.2	novel	1.00	5	0	5	0	y	1.00	8	0	8	0	y	0.75	6	2	6	2	y	1.00	5	0	5	0	y	0.71	5	2	5	2	y	1.00	6	0	6	0	y	0.88	7	1	7	1	y	0.71	5	2	5	2	y	0.33	1	2	1	2	n	1.00	10	0	10	0	y	1.00	3	0	3	0	y	0.40	2	3	2	3	y	ENSMUSG00000033955.14	Tnks1bp1	chr2	protein_coding	tankyrase 1 binding protein 1
novel_NIR_11829	chr2	84878479	84881205	+	84880904	84881205	5pMXE	ENSMUST00000150200.8	novel	1.00	5	0	5	0	y	1.00	8	0	8	0	y	0.60	6	4	6	4	y	0.83	5	1	5	1	y	1.00	5	0	5	0	y	0.75	6	2	6	2	y	1.00	7	0	7	0	y	1.00	5	0	5	0	y	1.00	1	0	1	0	n	0.91	10	1	10	1	y	0.75	3	1	3	1	y	1.00	2	0	2	0	y	ENSMUSG00000033955.14	Tnks1bp1	chr2	protein_coding	tankyrase 1 binding protein 1
novel_NIR_11830	chr2	84879394	84881205	+	84880904	84881205	5pMXE	ENSMUST00000150200.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.50	1	1	1	1	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.50	1	1	1	1	n	1.00	2	0	2	0	y	ENSMUSG00000033955.14	Tnks1bp1	chr2	protein_coding	tankyrase 1 binding protein 1
novel_NIR_11831	chr2	84881317;84884714	84884627;84888470	+	84881317;84882899	84882269;84888470	MXE	ENSMUST00000151092.8	novel	0.00	0.0	2.5	0;0	5;0	n	0.00	0.0	5.0	0;0	10;0	n	0.23	2.5	8.5	2;3	17;0	y	0.00	0.0	6.5	0;0	13;0	n	0.00	0.0	4.5	0;0	9;0	n	0.00	0.0	2.5	0;0	5;0	n	0.00	0.0	5.0	0;0	10;0	n	0.00	0.0	6.0	0;0	12;0	n	0.00	0.0	2.0	0;0	4;0	n	0.00	0.0	9.5	0;0	19;0	n	0.00	0.0	2.0	0;0	4;0	n	0.17	0.5	2.5	0;1	5;0	n	ENSMUSG00000033955.14	Tnks1bp1	chr2	protein_coding	tankyrase 1 binding protein 1
novel_NIR_11832	chr2	84882899	84884402	+	84882899	84888404	A3SS	ENSMUST00000126309.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033955.14	Tnks1bp1	chr2	protein_coding	tankyrase 1 binding protein 1
novel_NIR_11833	chr2	84882899	84884402	+	84882899	84888470	A3SS	ENSMUST00000151092.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033955.14	Tnks1bp1	chr2	protein_coding	tankyrase 1 binding protein 1
novel_NIR_11834	chr2	84884714	84888470	+	84884696	84888470	A5SS	ENSMUST00000111605.9	novel	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.15	3	17	3	17	y	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.00	0	2	0	2	n	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.07	1	14	1	14	n	ENSMUSG00000033955.14	Tnks1bp1	chr2	protein_coding	tankyrase 1 binding protein 1
novel_NIR_11835	chr2	85851134	85865121	+	85851074	85865121	A5SS	ENSMUST00000214546.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045392.9	Olfr1033	chr2	protein_coding	olfactory receptor 1033
novel_NIR_11836	chr2	85851134	85865121	+	85851134	85871619	A3SS	ENSMUST00000213774.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045392.9	Olfr1033	chr2	protein_coding	olfactory receptor 1033
novel_NIR_11837	chr2	85852768	85865121	+	85851074	85865121	A5SS	ENSMUST00000214546.2	novel	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	7	0	7	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	ENSMUSG00000045392.9	Olfr1033	chr2	protein_coding	olfactory receptor 1033
novel_NIR_11838	chr2	85858407	85865121	+	85851074	85865121	A5SS	ENSMUST00000214546.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045392.9	Olfr1033	chr2	protein_coding	olfactory receptor 1033
novel_NIR_11839	chr2	85858407	85871619	+	85851074	85871619	A5SS	ENSMUST00000215682.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045392.9	Olfr1033	chr2	protein_coding	olfactory receptor 1033
novel_NIR_11840	chr2	85858407	85871619	+	85851134	85871619	A5SS	ENSMUST00000213774.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045392.9	Olfr1033	chr2	protein_coding	olfactory receptor 1033
novel_NIR_11841	chr2	85858407	85871619	+	85865238	85871619	A5SS&ES	ENSMUST00000214546.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000045392.9	Olfr1033	chr2	protein_coding	olfactory receptor 1033
novel_NIR_11842	chr2	85858407	85871619	+	85868966	85871619	5pMXE	ENSMUST00000218397.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045392.9	Olfr1033	chr2	protein_coding	olfactory receptor 1033
novel_NIR_11843	chr2	85865238	85866306	+	85865238	85871619	A3SS	ENSMUST00000214546.2	novel	1.00	7	0	7	0	y	0.86	6	1	6	1	y	0.93	13	1	13	1	n	1.00	2	0	2	0	y	1.00	11	0	11	0	y	1.00	5	0	5	0	y	0.91	10	1	10	1	y	1.00	7	0	7	0	y	1.00	1	0	1	0	n	0.75	3	1	3	1	y	0.91	10	1	10	1	y	0.83	10	2	10	2	y	ENSMUSG00000045392.9	Olfr1033	chr2	protein_coding	olfactory receptor 1033
novel_NIR_11844	chr2	85865238;85866342	85866306;85871619	+	85865238	85871619	cassetteExon	ENSMUST00000214546.2	novel	1.00	3.5	0	7;0	0	n	0.75	3.0	1	6;0	1	n	0.88	7.5	1	13;2	1	y	1.00	1.0	0	2;0	0	n	1.00	5.5	0	11;0	0	n	1.00	2.5	0	5;0	0	n	0.83	5.0	1	10;0	1	n	1.00	3.5	0	7;0	0	n	1.00	0.5	0	1;0	0	n	0.60	1.5	1	3;0	1	n	0.83	5.0	1	10;0	1	n	0.71	5.0	2	10;0	2	n	ENSMUSG00000045392.9	Olfr1033	chr2	protein_coding	olfactory receptor 1033
novel_NIR_11845	chr2	85866342	85871619	+	85851074	85871619	A5SS	ENSMUST00000215682.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045392.9	Olfr1033	chr2	protein_coding	olfactory receptor 1033
novel_NIR_11846	chr2	85866342	85871619	+	85851134	85871619	A5SS	ENSMUST00000213774.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045392.9	Olfr1033	chr2	protein_coding	olfactory receptor 1033
novel_NIR_11847	chr2	85866342	85871619	+	85868966	85871619	5pMXE	ENSMUST00000218397.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045392.9	Olfr1033	chr2	protein_coding	olfactory receptor 1033
novel_NIR_11848	chr2	90298809	90299878	-	90298806	90299878	A3SS	ENSMUST00000111495.9	novel	0.32	7	15	7	15	y	0.21	4	15	4	15	y	0.31	11	25	11	25	y	0.21	7	26	7	26	y	0.19	10	43	10	43	y	0.00	0	23	0	23	n	0.12	4	28	4	28	n	0.27	12	33	12	33	y	0.26	6	17	6	17	y	0.15	5	29	5	29	y	0.19	6	25	6	25	y	0.20	12	48	12	48	y	ENSMUSG00000025314.17	Ptprj	chr2	protein_coding	protein tyrosine phosphatase, receptor type, J
novel_NIR_11849	chr2	90305333	90397180	-	90305333	90309311	5pMXE	ENSMUST00000111495.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	ENSMUSG00000025314.17	Ptprj	chr2	protein_coding	protein tyrosine phosphatase, receptor type, J
novel_NIR_11850	chr2	90305333	90397180	-	90305333	90410500	A5SS	ENSMUST00000168621.3	novel	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.05	1	20	1	20	n	0.08	2	22	2	22	n	0.17	4	20	4	20	y	0.08	1	11	1	11	n	0.00	0	3	0	3	n	0.14	1	6	1	6	n	0.00	0	11	0	11	n	0.10	2	19	2	19	n	0.20	2	8	2	8	y	0.11	2	17	2	17	n	ENSMUSG00000025314.17	Ptprj	chr2	protein_coding	protein tyrosine phosphatase, receptor type, J
novel_NIR_11851	chr2	90577132	90581446	+	90577132	90581776	A3SS	ENSMUST00000123314.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000008200.16	Fnbp4	chr2	protein_coding	formin binding protein 4
novel_NIR_11852	chr2	90680048	90683137	+	90680048	90683160	A3SS	ENSMUST00000057216.15	novel	0.40	2	3	2	3	y	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.33	1	2	1	2	n	ENSMUSG00000027282.18	Mtch2	chr2	protein_coding	mitochondrial carrier 2
novel_NIR_11853	chr2	90680048	90683137	+	90680048	90683395	A3SS	ENSMUST00000111467.4	novel	0.22	2	7	2	7	y	0.22	2	7	2	7	y	0.00	0	5	0	5	n	0.07	1	13	1	13	n	0.10	1	9	1	9	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.25	3	9	3	9	y	0.00	0	6	0	6	n	0.10	1	9	1	9	n	ENSMUSG00000027282.18	Mtch2	chr2	protein_coding	mitochondrial carrier 2
novel_NIR_11854	chr2	90727481	90728728	-	90728437	90728728	A3SS&ES	ENSMUST00000140248.2	novel	0.60	3	2	3	2	y	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	ENSMUSG00000005510.10	Ndufs3	chr2	protein_coding	NADH:ubiquinone oxidoreductase core subunit S3
novel_NIR_11855	chr2	90735253	90736014	+	90735253	90735763	3pMXE	ENSMUST00000124284.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000005505.13	Kbtbd4	chr2	protein_coding	kelch repeat and BTB (POZ) domain containing 4
novel_NIR_11856	chr2	90739462	90741552	+	90739720	90741552	5pMXE	ENSMUST00000155372.2	novel	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.38	3	5	3	5	y	0.40	2	3	2	3	y	0.36	4	7	4	7	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	7	0	7	0	y	0.20	1	4	1	4	n	0.17	1	5	1	5	n	1.00	3	0	3	0	y	0.00	0	7	0	7	n	ENSMUSG00000005505.13	Kbtbd4	chr2	protein_coding	kelch repeat and BTB (POZ) domain containing 4
novel_NIR_11857	chr2	90747259	90747773	-	90747255	90747773	A3SS	ENSMUST00000125001.11	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	3	3	3	3	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000063235.19	Ptpmt1	chr2	protein_coding	protein tyrosine phosphatase, mitochondrial 1
novel_NIR_11858	chr2	90881564	90884198	-	90876163	90884198	A3SS	ENSMUST00000146633.8	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000086495.8	Gm13778	chr2	lncRNA	predicted gene 13778
novel_NIR_11859	chr2	90881567	90884198	-	90876163	90884198	A3SS	ENSMUST00000146633.8	novel	0.00	0	4	0	4	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000086495.8	Gm13778	chr2	lncRNA	predicted gene 13778
novel_NIR_11860	chr2	90899084	90899201	-	90899084	90899166	A5SS	ENSMUST00000142943.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000002105.16	Slc39a13	chr2	protein_coding	solute carrier family 39 (metal ion transporter), member 13
novel_NIR_11861	chr2	90899084	90899201	-	90899084	90899974	A5SS	ENSMUST00000153367.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000002105.16	Slc39a13	chr2	protein_coding	solute carrier family 39 (metal ion transporter), member 13
novel_NIR_11862	chr2	90899084	90899543	-	90899084	90899166	5pMXE	ENSMUST00000142943.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000002105.16	Slc39a13	chr2	protein_coding	solute carrier family 39 (metal ion transporter), member 13
novel_NIR_11863	chr2	90899084	90899543	-	90899084	90899974	A5SS	ENSMUST00000153367.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000002105.16	Slc39a13	chr2	protein_coding	solute carrier family 39 (metal ion transporter), member 13
novel_NIR_11864	chr2	90899084	90899689	-	90899084	90899166	5pMXE	ENSMUST00000142943.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000002105.16	Slc39a13	chr2	protein_coding	solute carrier family 39 (metal ion transporter), member 13
novel_NIR_11865	chr2	90899084	90899689	-	90899084	90899974	A5SS	ENSMUST00000153367.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000002105.16	Slc39a13	chr2	protein_coding	solute carrier family 39 (metal ion transporter), member 13
novel_NIR_11866	chr2	90899084	90899689	-	90899084	90900500	A5SS	ENSMUST00000073575.12	novel	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.15	2	11	2	11	y	0.00	0	21	0	21	n	0.00	0	11	0	11	n	0.00	0	23	0	23	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	ENSMUSG00000002105.16	Slc39a13	chr2	protein_coding	solute carrier family 39 (metal ion transporter), member 13
novel_NIR_11867	chr2	90982909	90982997	-	90982909	90984780	A5SS	ENSMUST00000111373.8	novel	0.00	0	22	0	22	n	0.11	2	17	2	17	n	0.00	0	20	0	20	n	0.23	6	20	6	20	y	0.22	5	18	5	18	y	0.00	0	10	0	10	n	0.11	2	16	2	16	n	0.15	2	11	2	11	y	0.25	3	9	3	9	y	0.29	9	22	9	22	y	0.27	4	11	4	11	y	0.25	3	9	3	9	y	ENSMUSG00000040687.17	Madd	chr2	protein_coding	MAP-kinase activating death domain
novel_NIR_11868	chr2	90982909	90983334	-	90982909	90984780	A5SS	ENSMUST00000111373.8	novel	0.27	8	22	8	22	y	0.19	4	17	4	17	y	0.05	1	20	1	20	n	0.39	13	20	13	20	y	0.18	4	18	4	18	y	0.00	0	10	0	10	n	0.30	7	16	7	16	y	0.15	2	11	2	11	y	0.10	1	9	1	9	n	0.24	7	22	7	22	y	0.56	14	11	14	11	y	0.59	13	9	13	9	y	ENSMUSG00000040687.17	Madd	chr2	protein_coding	MAP-kinase activating death domain
novel_NIR_11869	chr2	90988872	90989550	-	90988488	90989550	A3SS	ENSMUST00000153688.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040687.17	Madd	chr2	protein_coding	MAP-kinase activating death domain
novel_NIR_11870	chr2	90988872	90989550	-	90988833	90989550	A3SS	ENSMUST00000111373.8	novel	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.17	2	10	2	10	y	0.00	0	6	0	6	n	0.08	2	24	2	24	n	0.00	0	9	0	9	n	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.07	1	14	1	14	n	0.13	3	20	3	20	n	0.00	0	11	0	11	n	0.00	0	27	0	27	n	ENSMUSG00000040687.17	Madd	chr2	protein_coding	MAP-kinase activating death domain
novel_NIR_11871	chr2	91009666	91014792	-	91009666	91013137	5pMXE	ENSMUST00000111376.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040687.17	Madd	chr2	protein_coding	MAP-kinase activating death domain
novel_NIR_11872	chr2	91009666	91014792	-	91009666	91013141	5pMXE	ENSMUST00000111370.9	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000040687.17	Madd	chr2	protein_coding	MAP-kinase activating death domain
novel_NIR_11873	chr2	91009666	91014792	-	91009666	91013316	5pMXE	ENSMUST00000150517.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040687.17	Madd	chr2	protein_coding	MAP-kinase activating death domain
novel_NIR_11874	chr2	91009666	91014792	-	91009666	91014094	5pMXE	ENSMUST00000077941.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000040687.17	Madd	chr2	protein_coding	MAP-kinase activating death domain
novel_NIR_11875	chr2	91009666	91015000	-	91009666	91013137	5pMXE	ENSMUST00000111376.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000040687.17	Madd	chr2	protein_coding	MAP-kinase activating death domain
novel_NIR_11876	chr2	91009666	91015000	-	91009666	91013141	5pMXE	ENSMUST00000111370.9	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.33	1	2	1	2	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.50	1	1	1	1	n	0.00	0	4	0	4	n	0.60	3	2	3	2	y	0.00	0	5	0	5	n	ENSMUSG00000040687.17	Madd	chr2	protein_coding	MAP-kinase activating death domain
novel_NIR_11877	chr2	91009666	91015000	-	91009666	91013316	5pMXE	ENSMUST00000150517.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.25	1	3	1	3	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000040687.17	Madd	chr2	protein_coding	MAP-kinase activating death domain
novel_NIR_11878	chr2	91009666	91015000	-	91009666	91014094	5pMXE	ENSMUST00000077941.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.60	3	2	3	2	y	0.00	0	2	0	2	n	ENSMUSG00000040687.17	Madd	chr2	protein_coding	MAP-kinase activating death domain
novel_NIR_11879	chr2	91020896	91021084	-	91020629	91021084	A3SS	ENSMUST00000111355.8	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	10	0	10	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000002108.11	Nr1h3	chr2	protein_coding	nuclear receptor subfamily 1, group H, member 3
novel_NIR_11880	chr2	91020959	91021084	-	91020629	91021084	A3SS	ENSMUST00000111355.8	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000002108.11	Nr1h3	chr2	protein_coding	nuclear receptor subfamily 1, group H, member 3
novel_NIR_11881	chr2	91024041	91024313	-	91024041	91024998	A5SS	ENSMUST00000111355.8	novel	1.00	4	0	4	0	y	0.75	3	1	3	1	y	0.44	4	5	4	5	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.50	1	1	1	1	n	ENSMUSG00000002108.11	Nr1h3	chr2	protein_coding	nuclear receptor subfamily 1, group H, member 3
novel_NIR_11882	chr2	91024041	91024313	-	91024041	91033090	A5SS	ENSMUST00000136234.2	novel	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.50	1	1	1	1	n	ENSMUSG00000002108.11	Nr1h3	chr2	protein_coding	nuclear receptor subfamily 1, group H, member 3
novel_NIR_11883	chr2	91024041	91025317	-	91024041	91024998	5pMXE	ENSMUST00000111355.8	novel	1.00	1	0	1	0	n	0.80	4	1	4	1	y	0.00	0	5	0	5	n	0.60	3	2	3	2	y	0.64	9	5	9	5	y	0.75	3	1	3	1	y	0.50	1	1	1	1	n	0.67	2	1	2	1	y	1.00	6	0	6	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.75	3	1	3	1	y	ENSMUSG00000002108.11	Nr1h3	chr2	protein_coding	nuclear receptor subfamily 1, group H, member 3
novel_NIR_11884	chr2	91024041	91025317	-	91024041	91025076	A5SS	ENSMUST00000111356.8	novel	0.03	1	35	1	35	n	0.11	4	32	4	32	n	0.00	0	33	0	33	n	0.09	3	32	3	32	n	0.16	9	47	9	47	y	0.10	3	27	3	27	n	0.02	1	45	1	45	n	0.08	2	23	2	23	n	0.16	6	31	6	31	y	0.00	0	31	0	31	n	0.00	0	33	0	33	n	0.07	3	37	3	37	n	ENSMUSG00000002108.11	Nr1h3	chr2	protein_coding	nuclear receptor subfamily 1, group H, member 3
novel_NIR_11885	chr2	91024041	91025317	-	91024041	91033090	A5SS	ENSMUST00000136234.2	novel	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	0.75	3	1	3	1	y	1.00	9	0	9	0	y	1.00	3	0	3	0	y	0.50	1	1	1	1	n	1.00	2	0	2	0	y	0.75	6	2	6	2	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.75	3	1	3	1	y	ENSMUSG00000002108.11	Nr1h3	chr2	protein_coding	nuclear receptor subfamily 1, group H, member 3
novel_NIR_11886	chr2	91024041	91025343	-	91024041	91024998	5pMXE	ENSMUST00000111355.8	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.55	6	5	6	5	y	0.00	0	1	0	1	n	0.75	3	1	3	1	y	0.67	2	1	2	1	y	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000002108.11	Nr1h3	chr2	protein_coding	nuclear receptor subfamily 1, group H, member 3
novel_NIR_11887	chr2	91024041	91025343	-	91024041	91033090	A5SS	ENSMUST00000136234.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	6	0	6	0	y	-	-	-	-	-	-	0.75	3	1	3	1	y	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000002108.11	Nr1h3	chr2	protein_coding	nuclear receptor subfamily 1, group H, member 3
novel_NIR_11888	chr2	91024041	91025484	-	91024041	91024998	5pMXE	ENSMUST00000111355.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.38	3	5	3	5	y	0.00	0	1	0	1	n	0.80	4	1	4	1	y	0.75	3	1	3	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000002108.11	Nr1h3	chr2	protein_coding	nuclear receptor subfamily 1, group H, member 3
novel_NIR_11889	chr2	91024041	91025484	-	91024041	91033090	A5SS	ENSMUST00000136234.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.80	4	1	4	1	y	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000002108.11	Nr1h3	chr2	protein_coding	nuclear receptor subfamily 1, group H, member 3
novel_NIR_11890	chr2	91024041	91033207	-	91024041	91024998	5pMXE	ENSMUST00000111355.8	novel	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.17	1	5	1	5	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000002108.11	Nr1h3	chr2	protein_coding	nuclear receptor subfamily 1, group H, member 3
novel_NIR_11891	chr2	91024041	91033207	-	91024041	91033090	5pMXE	ENSMUST00000136234.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000002108.11	Nr1h3	chr2	protein_coding	nuclear receptor subfamily 1, group H, member 3
novel_NIR_11892	chr2	91042959	91047398	-	91042959	91047011	A5SS&ES	ENSMUST00000135927.2	novel	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.27	3	8	3	8	y	0.17	3	15	3	15	n	0.17	1	5	1	5	n	0.24	4	13	4	13	y	0.25	2	6	2	6	y	0.00	0	7	0	7	n	0.11	1	8	1	8	n	0.10	1	9	1	9	n	0.00	0	11	0	11	n	ENSMUSG00000002109.15	Ddb2	chr2	protein_coding	damage specific DNA binding protein 2
novel_NIR_11893	chr2	91042959	91047398	-	91042959	91064453	A5SS	ENSMUST00000150427.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	2	0	2	0	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000002109.15	Ddb2	chr2	protein_coding	damage specific DNA binding protein 2
novel_NIR_11894	chr2	91042959	91047398	-	91042959;91047153	91047011;91047398	ES	ENSMUST00000152277.8	novel	0.00	0	9.0	0	12;6	n	0.00	0	4.5	0	4;5	n	0.00	0	8.5	0	11;6	n	0.30	3	7.0	3	8;6	y	0.19	3	12.5	3	15;10	y	0.20	1	4.0	1	5;3	n	0.26	4	11.5	4	13;10	y	0.31	2	4.5	2	6;3	y	0.00	0	11.0	0	7;15	n	0.08	1	12.0	1	8;16	n	0.10	1	9.5	1	9;10	n	0.00	0	9.0	0	11;7	n	ENSMUSG00000002109.15	Ddb2	chr2	protein_coding	damage specific DNA binding protein 2
novel_NIR_11895	chr2	91088832	91090209	+	91086753	91090209	A5SS	ENSMUST00000154959.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000027257.14	Pacsin3	chr2	protein_coding	protein kinase C and casein kinase substrate in neurons 3
novel_NIR_11896	chr2	91088832	91090209	+	91089772	91090209	5pMXE	ENSMUST00000124658.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	ENSMUSG00000027257.14	Pacsin3	chr2	protein_coding	protein kinase C and casein kinase substrate in neurons 3
novel_NIR_11897	chr2	91305653	91306303	+	91305653	91306611	A3SS	ENSMUST00000143874.8	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.20	2	8	2	8	y	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.14	1	6	1	6	n	0.06	1	17	1	17	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	ENSMUSG00000027253.16	Lrp4	chr2	protein_coding	low density lipoprotein receptor-related protein 4
novel_NIR_11898	chr2	91312325	91316130	+	91312325	91316099	A3SS	ENSMUST00000028689.4	novel	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.67	2	1	2	1	y	0.17	2	10	2	10	y	0.13	2	13	2	13	n	1.00	2	0	2	0	y	0.10	1	9	1	9	n	0.50	2	2	2	2	y	0.20	2	8	2	8	y	0.00	0	14	0	14	n	0.11	1	8	1	8	n	0.00	0	6	0	6	n	ENSMUSG00000027253.16	Lrp4	chr2	protein_coding	low density lipoprotein receptor-related protein 4
novel_NIR_11899	chr2	91336433	91338794	+	91336433	91338814	A3SS	ENSMUST00000028689.4	novel	0.18	2	9	2	9	y	0.00	0	16	0	16	n	0.00	0	4	0	4	n	0.00	0	23	0	23	n	0.00	0	20	0	20	n	0.00	0	6	0	6	n	0.05	1	21	1	21	n	0.00	0	5	0	5	n	0.15	2	11	2	11	y	0.03	1	34	1	34	n	0.00	0	21	0	21	n	0.14	2	12	2	12	n	ENSMUSG00000027253.16	Lrp4	chr2	protein_coding	low density lipoprotein receptor-related protein 4
novel_NIR_11900	chr2	91446805	91450327	+	91446805;91450184	91450096;91450327	ES	ENSMUST00000046769.16	novel	0.00	0	9.0	0	0;18	n	0.00	0	12.5	0	4;21	n	0.00	0	15.5	0	1;30	n	0.22	2	7.0	2	0;14	y	0.00	0	11.5	0	0;23	n	0.00	0	3.5	0	0;7	n	0.00	0	10.0	0	0;20	n	0.00	0	5.5	0	1;10	n	0.00	0	7.0	0	2;12	n	0.00	0	13.5	0	0;27	n	0.00	0	8.5	0	0;17	n	0.00	0	12.0	0	0;24	n	ENSMUSG00000040549.17	Ckap5	chr2	protein_coding	cytoskeleton associated protein 5
novel_NIR_11901	chr2	91480597	91482094	+	91480597	91482109	A3SS	ENSMUST00000111329.8	novel	0.00	0	4	0	4	n	0.50	1	1	1	1	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.50	3	3	3	3	y	0.00	0	5	0	5	n	0.11	1	8	1	8	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	ENSMUSG00000027247.17	Arhgap1	chr2	protein_coding	Rho GTPase activating protein 1
novel_NIR_11902	chr2	91480597	91482094	+	91480597	91484418	A3SS	ENSMUST00000111331.9	novel	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	ENSMUSG00000027247.17	Arhgap1	chr2	protein_coding	Rho GTPase activating protein 1
novel_NIR_11903	chr2	91481999	91482094	+	91481999	91482109	A3SS	ENSMUST00000154468.8	novel	0.50	1	1	1	1	n	1.00	2	0	2	0	y	0.44	4	5	4	5	y	1.00	2	0	2	0	y	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027247.17	Arhgap1	chr2	protein_coding	Rho GTPase activating protein 1
novel_NIR_11904	chr2	91482168	91484388	+	91482168	91484391	A3SS	ENSMUST00000090614.11	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	7	0	7	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000027247.17	Arhgap1	chr2	protein_coding	Rho GTPase activating protein 1
novel_NIR_11905	chr2	91482168	91484388	+	91482168	91484418	A3SS	ENSMUST00000111329.8	novel	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.03	1	32	1	32	n	0.15	2	11	2	11	y	0.00	0	10	0	10	n	0.00	0	27	0	27	n	0.00	0	8	0	8	n	0.00	0	15	0	15	n	0.00	0	15	0	15	n	0.00	0	16	0	16	n	0.00	0	5	0	5	n	0.08	1	11	1	11	n	ENSMUSG00000027247.17	Arhgap1	chr2	protein_coding	Rho GTPase activating protein 1
novel_NIR_11906	chr2	91526344	91540576	-	91526344	91535926	5pMXE	ENSMUST00000136412.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027244.15	Atg13	chr2	protein_coding	autophagy related 13
novel_NIR_11907	chr2	91602896	91603056	+	91602782	91603056	A5SS	ENSMUST00000099712.10	novel	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.15	2	11	2	11	y	0.00	0	4	0	4	n	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.14	1	6	1	6	n	0.37	7	12	7	12	y	0.00	0	9	0	9	n	0.00	0	20	0	20	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	ENSMUSG00000040506.17	Ambra1	chr2	protein_coding	autophagy/beclin 1 regulator 1
novel_NIR_11908	chr2	91767119	91767203	-	91767116	91767203	A3SS	ENSMUST00000128152.8	novel	0.21	12	46	12	46	y	0.13	5	33	5	33	n	0.12	4	30	4	30	n	0.11	4	32	4	32	n	0.27	18	49	18	49	y	0.00	0	27	0	27	n	0.26	14	40	14	40	y	0.16	7	36	7	36	y	0.27	12	33	12	33	y	0.19	11	46	11	46	y	0.33	14	29	14	29	y	0.18	11	50	11	50	y	ENSMUSG00000040479.13	Dgkz	chr2	protein_coding	diacylglycerol kinase zeta
novel_NIR_11909	chr2	91775214	91775515	-	91775214	91775519	A5SS	ENSMUST00000111303.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000040479.13	Dgkz	chr2	protein_coding	diacylglycerol kinase zeta
novel_NIR_11910	chr2	91775214	91775515	-	91775214	91776171	A5SS	ENSMUST00000142090.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040479.13	Dgkz	chr2	protein_coding	diacylglycerol kinase zeta
novel_NIR_11911	chr2	91775214	91775515	-	91775214	91793631	A5SS	ENSMUST00000028667.10	novel	0.00	0	18	0	18	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	17	0	17	n	0.00	0	22	0	22	n	0.00	0	3	0	3	n	0.16	3	16	3	16	y	0.00	0	16	0	16	n	0.00	0	10	0	10	n	0.00	0	19	0	19	n	0.00	0	7	0	7	n	0.00	0	32	0	32	n	ENSMUSG00000040479.13	Dgkz	chr2	protein_coding	diacylglycerol kinase zeta
novel_NIR_11912	chr2	91775214	91775515	-	91775214	91795765	A5SS	ENSMUST00000128152.8	novel	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	-	-	-	-	-	-	0.60	3	2	3	2	y	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	ENSMUSG00000040479.13	Dgkz	chr2	protein_coding	diacylglycerol kinase zeta
novel_NIR_11913	chr2	91775214	91775515	-	91775214	91805912	A5SS	ENSMUST00000099709.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040479.13	Dgkz	chr2	protein_coding	diacylglycerol kinase zeta
novel_NIR_11914	chr2	91776269	91793631	-	91776269	91780566	5pMXE	ENSMUST00000111303.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000040479.13	Dgkz	chr2	protein_coding	diacylglycerol kinase zeta
novel_NIR_11915	chr2	92157509	92158660	+	92150804	92158660	A5SS	ENSMUST00000068702.14	novel	0.33	1	2	1	2	n	-	-	-	-	-	-	0.57	4	3	4	3	y	1.00	2	0	2	0	y	0.33	4	8	4	8	y	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	1	0	1	0	n	0.60	3	2	3	2	y	-	-	-	-	-	-	0.57	4	3	4	3	y	ENSMUSG00000058318.16	Phf21a	chr2	protein_coding	PHD finger protein 21A
novel_NIR_11916	chr2	92157509	92158660	+	92157509	92158657	A3SS	ENSMUST00000111290.10	novel	0.10	1	9	1	9	n	0.00	0	3	0	3	n	0.25	4	12	4	12	y	0.20	2	8	2	8	y	0.22	4	14	4	14	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.09	1	10	1	10	n	0.17	1	5	1	5	n	0.38	3	5	3	5	y	0.00	0	7	0	7	n	0.67	4	2	4	2	y	ENSMUSG00000058318.16	Phf21a	chr2	protein_coding	PHD finger protein 21A
novel_NIR_11917	chr2	92196828	92197361	-	92196941	92197361	A3SS	ENSMUST00000176774.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.14	1	6	1	6	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000040434.17	Large2	chr2	protein_coding	LARGE xylosyl- and glucuronyltransferase 2
novel_NIR_11918	chr2	92205946	92206216	+	92205166	92206216	A5SS	ENSMUST00000155891.8	novel	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	0.81	13	3	13	3	y	1.00	3	0	3	0	y	0.75	3	1	3	1	y	0.50	2	2	2	2	y	0.86	12	2	12	2	y	1.00	3	0	3	0	y	ENSMUSG00000027222.15	Pex16	chr2	protein_coding	peroxisomal biogenesis factor 16
novel_NIR_11919	chr2	92207048	92207787	+	92207048	92208036	A3SS	ENSMUST00000154669.8	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	1.00	12	0	12	0	y	0.00	0	2	0	2	n	ENSMUSG00000027222.15	Pex16	chr2	protein_coding	peroxisomal biogenesis factor 16
novel_NIR_11920	chr2	92207048	92207790	+	92207048	92208036	A3SS	ENSMUST00000154669.8	novel	0.00	0	2	0	2	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.75	3	1	3	1	y	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000027222.15	Pex16	chr2	protein_coding	peroxisomal biogenesis factor 16
novel_NIR_11921	chr2	92257355	92262656	-	92257355	92262508	A5SS	ENSMUST00000144842.2	novel	0.67	2	1	2	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.25	1	3	1	3	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000068742.12	Cry2	chr2	protein_coding	cryptochrome 2 (photolyase-like)
novel_NIR_11922	chr2	93027323	93027807	+	93027323	93027954	A3SS	ENSMUST00000150462.8	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	1.00	2	0	2	0	y	0.50	1	1	1	1	n	0.60	3	2	3	2	y	0.50	2	2	2	2	y	0.33	1	2	1	2	n	0.50	2	2	2	2	y	1.00	3	0	3	0	y	0.50	1	1	1	1	n	1.00	3	0	3	0	y	ENSMUSG00000068735.15	Trp53i11	chr2	protein_coding	transformation related protein 53 inducible protein 11
novel_NIR_11923	chr2	93027323	93027807	+	93027323	93027957	A3SS	ENSMUST00000090554.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	1.00	2	0	2	0	y	0.17	1	5	1	5	n	0.43	3	4	3	4	y	0.22	2	7	2	7	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.60	3	2	3	2	y	0.25	1	3	1	3	n	0.75	3	1	3	1	y	ENSMUSG00000068735.15	Trp53i11	chr2	protein_coding	transformation related protein 53 inducible protein 11
novel_NIR_11924	chr2	93027323	93027807	+	93027324	93027807	A5SS	ENSMUST00000147377.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	ENSMUSG00000068735.15	Trp53i11	chr2	protein_coding	transformation related protein 53 inducible protein 11
novel_NIR_11925	chr2	93526616	93560503	-	93492026	93560503	A3SS	ENSMUST00000184931.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027198.17	Ext2	chr2	protein_coding	exostosin glycosyltransferase 2
novel_NIR_11926	chr2	93526616	93560503	-	93548156	93560503	3pMXE	ENSMUST00000123649.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027198.17	Ext2	chr2	protein_coding	exostosin glycosyltransferase 2
novel_NIR_11927	chr2	93559105	93560503	-	93492026	93560503	A3SS	ENSMUST00000184931.8	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000027198.17	Ext2	chr2	protein_coding	exostosin glycosyltransferase 2
novel_NIR_11928	chr2	93559105	93560503	-	93548156	93560503	A3SS	ENSMUST00000123649.8	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000027198.17	Ext2	chr2	protein_coding	exostosin glycosyltransferase 2
novel_NIR_11929	chr2	93644309	93650380	-	93644309	93650375	A5SS	ENSMUST00000184931.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.75	3	1	3	1	y	0.00	0	1	0	1	n	ENSMUSG00000027198.17	Ext2	chr2	protein_coding	exostosin glycosyltransferase 2
novel_NIR_11930	chr2	93644309	93650380	-	93644309	93651955	A5SS	ENSMUST00000145838.8	novel	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.12	1	7	1	7	n	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.60	3	2	3	2	y	0.00	0	3	0	3	n	ENSMUSG00000027198.17	Ext2	chr2	protein_coding	exostosin glycosyltransferase 2
novel_NIR_11931	chr2	93644309	93650380	-	93644309	93652732	A5SS	ENSMUST00000028623.13	novel	0.00	0	21	0	21	n	0.00	0	20	0	20	n	0.00	0	18	0	18	n	0.05	1	21	1	21	n	0.00	0	29	0	29	n	0.00	0	12	0	12	n	0.00	0	34	0	34	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	27	0	27	n	0.20	3	12	3	12	y	0.00	0	31	0	31	n	ENSMUSG00000027198.17	Ext2	chr2	protein_coding	exostosin glycosyltransferase 2
novel_NIR_11932	chr2	93811959	93833398	-	93811959	93815045	5pMXE	ENSMUST00000126255.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040174.15	Alkbh3	chr2	protein_coding	alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase
novel_NIR_11933	chr2	93811959	93833398	-	93826737	93833398	3pMXE	ENSMUST00000138046.8	novel	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.20	2	8	2	8	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	ENSMUSG00000040174.15	Alkbh3	chr2	protein_coding	alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase
novel_NIR_11934	chr2	93825661	93826528	-	93787872	93826528	A3SS	ENSMUST00000183110.2	novel	0.50	1	1	1	1	n	1.00	4	0	4	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000098004.2	Gm27027	chr2	protein_coding	predicted gene, 27027
novel_NIR_11935	chr2	93838933	93840608	-	93838937	93840608	A3SS	ENSMUST00000138046.8	novel	0.00	0	13	0	13	n	0.00	0	19	0	19	n	0.00	0	26	0	26	n	0.00	0	11	0	11	n	0.00	0	21	0	21	n	0.22	2	7	2	7	y	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.00	0	21	0	21	n	0.00	0	14	0	14	n	0.00	0	17	0	17	n	ENSMUSG00000040174.15	Alkbh3	chr2	protein_coding	alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase
novel_NIR_11936	chr2	93874283	93874484	-	93874283	93882599	A5SS	ENSMUST00000145967.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027195.11	Hsd17b12	chr2	protein_coding	hydroxysteroid (17-beta) dehydrogenase 12
novel_NIR_11937	chr2	93896818	93945338	-	93896818	93897025	5pMXE	ENSMUST00000146580.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	ENSMUSG00000027195.11	Hsd17b12	chr2	protein_coding	hydroxysteroid (17-beta) dehydrogenase 12
novel_NIR_11938	chr2	93997335	94007550	-	93997335	94008948	A5SS	ENSMUST00000209947.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000075020.7	Mir670hg	chr2	lncRNA	MIR670 host gene (non-protein coding)
novel_NIR_11939	chr2	93997335	94007550	-	93997335	94014912	A5SS	ENSMUST00000210851.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000075020.7	Mir670hg	chr2	lncRNA	MIR670 host gene (non-protein coding)
novel_NIR_11940	chr2	94244131	94248601	-	94244126	94248601	A3SS	ENSMUST00000028617.7	novel	0.09	8	78	8	78	n	0.16	12	61	12	61	y	0.14	11	68	11	68	n	0.16	16	83	16	83	y	0.14	17	104	17	104	n	0.11	6	51	6	51	n	0.21	24	88	24	88	y	0.24	15	47	15	47	y	0.17	10	48	10	48	y	0.18	20	90	20	90	y	0.06	4	65	4	65	n	0.09	10	101	10	101	n	ENSMUSG00000027193.13	Api5	chr2	protein_coding	apoptosis inhibitor 5
novel_NIR_11941	chr3	100103913	100109327	+	100101945	100109327	A5SS	ENSMUST00000197797.2	novel	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000027865.11	Gdap2	chr3	protein_coding	ganglioside-induced differentiation-associated-protein 2
novel_NIR_11942	chr3	100485907	100489379	-	100485907	100489301	A5SS	ENSMUST00000008907.14	novel	0.06	2	29	2	29	n	0.05	1	20	1	20	n	0.08	4	49	4	49	n	0.00	0	29	0	29	n	0.00	0	49	0	49	n	0.03	1	29	1	29	n	0.00	0	46	0	46	n	0.08	2	23	2	23	n	0.20	3	12	3	12	y	0.00	0	47	0	47	n	0.00	0	17	0	17	n	0.00	0	31	0	31	n	ENSMUSG00000008763.17	Man1a2	chr3	protein_coding	mannosidase, alpha, class 1A, member 2
novel_NIR_11943	chr3	100563590	100592458	-	100591943	100592458	3pMXE	ENSMUST00000146818.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000008763.17	Man1a2	chr3	protein_coding	mannosidase, alpha, class 1A, member 2
novel_NIR_11944	chr3	100592259	100592458	-	100591943	100592458	A3SS	ENSMUST00000146818.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000008763.17	Man1a2	chr3	protein_coding	mannosidase, alpha, class 1A, member 2
novel_NIR_11945	chr3	100592259	100592458	-	100592003	100592458	A3SS	ENSMUST00000123442.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000008763.17	Man1a2	chr3	protein_coding	mannosidase, alpha, class 1A, member 2
novel_NIR_11946	chr3	100693138	100782077	+	100732906	100782077	5pMXE	ENSMUST00000054791.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000051076.9	Vtcn1	chr3	protein_coding	V-set domain containing T cell activation inhibitor 1
novel_NIR_11947	chr3	100861635	100863502	-	100861657	100863502	A3SS	ENSMUST00000076941.12	novel	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.25	2	6	2	6	y	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	ENSMUSG00000033222.17	Ttf2	chr3	protein_coding	transcription termination factor, RNA polymerase II
novel_NIR_11948	chr3	10088967	10090405	-	10088964	10090405	A3SS	ENSMUST00000195727.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.90	9	1	9	1	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000104000.2	Gm38335	chr3	lncRNA	predicted gene, 38335
novel_NIR_11949	chr3	101805385	101822273	-	101805385	101822621	A5SS	ENSMUST00000106928.10	novel	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	ENSMUSG00000033147.17	Slc22a15	chr3	protein_coding	solute carrier family 22 (organic anion/cation transporter), member 15
novel_NIR_11950	chr3	102074287	102096725	-	102074287;102091874	102091267;102096725	ES	ENSMUST00000029453.13	novel	0.16	2	10.5	2	15;6	y	0.11	1	8.0	1	8;8	n	0.03	1	29.0	1	26;32	n	0.00	0	13.0	0	11;15	n	0.00	0	21.5	0	22;21	n	0.00	0	16.0	0	9;23	n	0.00	0	19.0	0	20;18	n	0.00	0	10.5	0	10;11	n	0.00	0	7.0	0	7;7	n	0.00	0	19.0	0	19;19	n	0.22	2	7.0	2	7;7	y	0.00	0	12.0	0	8;16	n	ENSMUSG00000027860.16	Vangl1	chr3	protein_coding	VANGL planar cell polarity 1
novel_NIR_11951	chr3	102074287	102096725	-	102091874	102096725	3pMXE	ENSMUST00000159586.2	novel	0.25	2	6	2	6	y	0.11	1	8	1	8	n	0.03	1	32	1	32	n	0.00	0	15	0	15	n	0.00	0	21	0	21	n	0.00	0	23	0	23	n	0.00	0	18	0	18	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	19	0	19	n	0.22	2	7	2	7	y	0.00	0	16	0	16	n	ENSMUSG00000027860.16	Vangl1	chr3	protein_coding	VANGL planar cell polarity 1
novel_NIR_11952	chr3	102186614	102195262	+	102186614	102195256	A3SS	ENSMUST00000198712.5	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000105891.5	A230001M10Rik	chr3	lncRNA	RIKEN cDNA A230001M10 gene
novel_NIR_11953	chr3	102186614	102195262	+	102186614	102328980	A3SS	ENSMUST00000196720.5	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000105891.5	A230001M10Rik	chr3	lncRNA	RIKEN cDNA A230001M10 gene
novel_NIR_11954	chr3	102903283	102904559	+	102903283	102905806	A3SS	ENSMUST00000119450.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027854.13	Sike1	chr3	protein_coding	suppressor of IKBKE 1
novel_NIR_11955	chr3	102951247	102951961	+	102951247	102951894	A3SS	ENSMUST00000195889.5	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000068823.11	Csde1	chr3	protein_coding	cold shock domain containing E1, RNA binding
novel_NIR_11956	chr3	102951247	102951961	+	102951247	102952075	A3SS	ENSMUST00000198174.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	8	0	8	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	7	0	7	n	ENSMUSG00000068823.11	Csde1	chr3	protein_coding	cold shock domain containing E1, RNA binding
novel_NIR_11957	chr3	10317417	10326503	-	10317417	10319038	5pMXE	ENSMUST00000172126.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027530.16	Fabp12	chr3	protein_coding	fatty acid binding protein 12
novel_NIR_11958	chr3	10317417	10326503	-	10317417	10319196	5pMXE	ENSMUST00000117917.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027530.16	Fabp12	chr3	protein_coding	fatty acid binding protein 12
novel_NIR_11959	chr3	10317417	10326503	-	10317417	10326470	A5SS	ENSMUST00000029043.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027530.16	Fabp12	chr3	protein_coding	fatty acid binding protein 12
novel_NIR_11960	chr3	10317417	10326503	-	10317417	10366185	A5SS	ENSMUST00000119761.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027530.16	Fabp12	chr3	protein_coding	fatty acid binding protein 12
novel_NIR_11961	chr3	103232075	103233385	+	103232075	103233404	A3SS	ENSMUST00000029444.13	novel	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.20	2	8	2	8	y	0.00	0	16	0	16	n	0.00	0	3	0	3	n	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.07	1	13	1	13	n	0.00	0	12	0	12	n	0.00	0	11	0	11	n	ENSMUSG00000033014.13	Trim33	chr3	protein_coding	tripartite motif-containing 33
novel_NIR_11962	chr3	103717373	103719102	+	103717373	103720093	A3SS	ENSMUST00000106824.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000032952.12	Ap4b1	chr3	protein_coding	adaptor-related protein complex AP-4, beta 1
novel_NIR_11963	chr3	103717373	103719102	+	103717373	103722141	A3SS	ENSMUST00000200377.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000032952.12	Ap4b1	chr3	protein_coding	adaptor-related protein complex AP-4, beta 1
novel_NIR_11964	chr3	103717373	103719119	+	103717373	103720093	A3SS	ENSMUST00000106824.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000032952.12	Ap4b1	chr3	protein_coding	adaptor-related protein complex AP-4, beta 1
novel_NIR_11965	chr3	103717373	103719119	+	103717373	103722141	A3SS	ENSMUST00000200377.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000032952.12	Ap4b1	chr3	protein_coding	adaptor-related protein complex AP-4, beta 1
novel_NIR_11966	chr3	10381314	10383988	-	10381314	10387964	A5SS	ENSMUST00000191670.6	novel	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	10	0	10	n	0.40	2	3	2	3	y	0.00	0	6	0	6	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	ENSMUSG00000027531.17	Impa1	chr3	protein_coding	inositol (myo)-1(or 4)-monophosphatase 1
novel_NIR_11967	chr3	10386793	10387964	-	10381314	10387964	A3SS	ENSMUST00000191670.6	novel	0.80	8	2	8	2	y	0.56	5	4	5	4	y	0.29	4	10	4	10	n	0.70	7	3	7	3	y	0.33	3	6	3	6	n	0.50	1	1	1	1	n	1.00	6	0	6	0	n	-	-	-	-	-	-	0.50	3	3	3	3	y	0.77	10	3	10	3	y	0.40	4	6	4	6	y	0.50	6	6	6	6	y	ENSMUSG00000027531.17	Impa1	chr3	protein_coding	inositol (myo)-1(or 4)-monophosphatase 1
novel_NIR_11968	chr3	103893225	103894267	+	103893225	103894743	A3SS	ENSMUST00000117150.8	novel	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.20	3	12	3	12	y	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	ENSMUSG00000058388.15	Phtf1	chr3	protein_coding	putative homeodomain transcription factor 1
novel_NIR_11969	chr3	103893225	103894267	+	103893225	103895931	A3SS	ENSMUST00000090685.11	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000058388.15	Phtf1	chr3	protein_coding	putative homeodomain transcription factor 1
novel_NIR_11970	chr3	103901218	103903939	+	103901218	103903918	A3SS	ENSMUST00000117150.8	novel	0.00	0	11	0	11	n	0.00	0	19	0	19	n	0.17	2	10	2	10	y	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.00	0	23	0	23	n	0.00	0	17	0	17	n	0.00	0	18	0	18	n	ENSMUSG00000058388.15	Phtf1	chr3	protein_coding	putative homeodomain transcription factor 1
novel_NIR_11971	chr3	103958660	103961658	-	103958714	103961658	A3SS	ENSMUST00000064371.14	novel	0.00	0	12	0	12	n	0.12	1	7	1	7	n	0.06	1	15	1	15	n	0.00	0	19	0	19	n	0.00	0	26	0	26	n	0.00	0	16	0	16	n	0.00	0	21	0	21	n	0.22	2	7	2	7	y	0.00	0	19	0	19	n	0.00	0	24	0	24	n	0.00	0	11	0	11	n	0.00	0	32	0	32	n	ENSMUSG00000052539.16	Magi3	chr3	protein_coding	membrane associated guanylate kinase, WW and PDZ domain containing 3
novel_NIR_11972	chr3	10413612	10416324	-	10413612	10416229	A5SS	ENSMUST00000184644.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	ENSMUSG00000039795.15	Zfand1	chr3	protein_coding	zinc finger, AN1-type domain 1
novel_NIR_11973	chr3	104404870	104406874	-	104404870	104418772	A5SS	ENSMUST00000046316.11	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.29	2	5	2	5	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000032913.14	Lrig2	chr3	protein_coding	leucine-rich repeats and immunoglobulin-like domains 2
novel_NIR_11974	chr3	104407694	104418772	-	104375964	104418772	A3SS	ENSMUST00000199070.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000032913.14	Lrig2	chr3	protein_coding	leucine-rich repeats and immunoglobulin-like domains 2
novel_NIR_11975	chr3	104407694	104418772	-	104404870	104418772	A3SS	ENSMUST00000046316.11	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.44	4	5	4	5	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	ENSMUSG00000032913.14	Lrig2	chr3	protein_coding	leucine-rich repeats and immunoglobulin-like domains 2
novel_NIR_11976	chr3	104725437	104725574	-	104725437	104725673	A5SS	ENSMUST00000106775.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.67	2	1	2	1	y	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000002227.16	Mov10	chr3	protein_coding	Mov10 RISC complex RNA helicase
novel_NIR_11977	chr3	104725437	104725574	-	104725472	104725574	A3SS	ENSMUST00000168015.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000002227.16	Mov10	chr3	protein_coding	Mov10 RISC complex RNA helicase
novel_NIR_11978	chr3	104747232	104748144	-	104742120	104748144	A3SS	ENSMUST00000195912.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.75	3	1	3	1	y	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000070372.12	Capza1	chr3	protein_coding	capping protein (actin filament) muscle Z-line, alpha 1
novel_NIR_11979	chr3	10485936	10499418	-	10485936	10502871	A5SS	ENSMUST00000195822.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027534.17	Snx16	chr3	protein_coding	sorting nexin 16
novel_NIR_11980	chr3	10485936	10499418	-	10485936;10491292	10491223;10499418	ES	ENSMUST00000099223.11	novel	0.10	1	9.0	1	9;9	n	0.08	1	12.0	1	12;12	n	0.00	0	13.5	0	13;14	n	0.00	0	8.5	0	5;12	n	0.17	2	10.0	2	12;8	y	0.00	0	5.5	0	7;4	n	0.00	0	7.0	0	8;6	n	0.00	0	10.0	0	10;10	n	0.12	1	7.0	1	7;7	n	0.05	1	17.5	1	16;19	n	0.00	0	7.5	0	9;6	n	0.00	0	6.5	0	9;4	n	ENSMUSG00000027534.17	Snx16	chr3	protein_coding	sorting nexin 16
novel_NIR_11981	chr3	105657644	105658368	-	105657644	105701371	A5SS	ENSMUST00000198004.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.33	1	2	1	2	n	ENSMUSG00000068798.11	Rap1a	chr3	protein_coding	RAS-related protein 1a
novel_NIR_11982	chr3	105657644	105684724	-	105657644	105701371	A5SS	ENSMUST00000198004.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.50	3	3	3	3	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.33	1	2	1	2	n	ENSMUSG00000068798.11	Rap1a	chr3	protein_coding	RAS-related protein 1a
novel_NIR_11983	chr3	105657644	105708110	-	105657644	105701371	A5SS&ES	ENSMUST00000198004.2	novel	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.29	2	5	2	5	y	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	3	0	3	0	y	0.40	2	3	2	3	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000068798.11	Rap1a	chr3	protein_coding	RAS-related protein 1a
novel_NIR_11984	chr3	105701455	105708110	-	105701455	105708555	A5SS	ENSMUST00000198004.2	novel	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000068798.11	Rap1a	chr3	protein_coding	RAS-related protein 1a
novel_NIR_11985	chr3	105836097	105858907	-	105836097	105839874	5pMXE	ENSMUST00000098758.5	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	ENSMUSG00000074342.5	I830077J02Rik	chr3	protein_coding	RIKEN cDNA I830077J02 gene
novel_NIR_11986	chr3	105836097	105858907	-	105850379	105858907	3pMXE	ENSMUST00000199311.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000000563.18	Atp5pb	chr3	protein_coding	ATP synthase peripheral stalk-membrane subunit b
novel_NIR_11987	chr3	105845000	105858907	-	105850379	105858907	3pMXE	ENSMUST00000199311.2	novel	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000000563.18	Atp5pb	chr3	protein_coding	ATP synthase peripheral stalk-membrane subunit b
novel_NIR_11988	chr3	105850379	105851007	-	105850379	105858907	A5SS	ENSMUST00000199311.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000000563.18	Atp5pb	chr3	protein_coding	ATP synthase peripheral stalk-membrane subunit b
novel_NIR_11989	chr3	105850379	105851120	-	105850379	105858907	A5SS	ENSMUST00000199311.2	novel	1.00	4	0	4	0	y	1.00	5	0	5	0	y	1.00	7	0	7	0	y	1.00	6	0	6	0	y	1.00	10	0	10	0	y	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.40	2	3	2	3	n	0.91	10	1	10	1	y	1.00	8	0	8	0	y	1.00	1	0	1	0	n	ENSMUSG00000000563.18	Atp5pb	chr3	protein_coding	ATP synthase peripheral stalk-membrane subunit b
novel_NIR_11990	chr3	106388642	106390462	-	106389467	106390462	3pMXE	ENSMUST00000189683.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000091575.3	2010016I18Rik	chr3	lncRNA	RIKEN cDNA 2010016I18 gene
novel_NIR_11991	chr3	106395750	106395845	+	106395279	106395845	A5SS	ENSMUST00000193651.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000027901.13	Dennd2d	chr3	protein_coding	DENN/MADD domain containing 2D
novel_NIR_11992	chr3	106406175	106406521	+	106406175	106406537	A3SS	ENSMUST00000029508.11	novel	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.00	0	21	0	21	n	0.16	3	16	3	16	y	0.00	0	24	0	24	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.06	1	17	1	17	n	0.00	0	15	0	15	n	0.00	0	32	0	32	n	0.15	2	11	2	11	y	0.00	0	19	0	19	n	ENSMUSG00000027901.13	Dennd2d	chr3	protein_coding	DENN/MADD domain containing 2D
novel_NIR_11993	chr3	106413068	106438453	-	106420203	106438453	A3SS&ES	ENSMUST00000068301.11	novel	0.00	0	16	0	16	n	0.12	1	7	1	7	n	0.06	1	16	1	16	n	0.00	0	2	0	2	n	0.00	0	20	0	20	n	0.00	0	7	0	7	n	0.04	1	23	1	23	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.20	1	4	1	4	n	0.00	0	9	0	9	n	0.27	4	11	4	11	y	ENSMUSG00000040774.16	Cept1	chr3	protein_coding	choline/ethanolaminephosphotransferase 1
novel_NIR_11994	chr3	106413113	106440671	-	106420186	106440671	A3SS&ES	ENSMUST00000192438.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	9	0	9	0	y	ENSMUSG00000040774.16	Cept1	chr3	protein_coding	choline/ethanolaminephosphotransferase 1
novel_NIR_11995	chr3	106413113	106440671	-	106427395	106440671	3pMXE	ENSMUST00000148269.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	9	0	9	0	y	ENSMUSG00000040774.16	Cept1	chr3	protein_coding	choline/ethanolaminephosphotransferase 1
novel_NIR_11996	chr3	106413168	106419841	-	106413168	106420119	A5SS	ENSMUST00000068301.11	novel	0.00	0	13	0	13	n	0.23	3	10	3	10	y	0.00	0	18	0	18	n	0.33	1	2	1	2	n	0.08	2	24	2	24	n	0.33	1	2	1	2	n	0.06	1	17	1	17	n	0.00	0	6	0	6	n	0.33	3	6	3	6	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	ENSMUSG00000040774.16	Cept1	chr3	protein_coding	choline/ethanolaminephosphotransferase 1
novel_NIR_11997	chr3	106413168	106421771	-	106413168	106420119	A5SS&ES	ENSMUST00000192438.6	novel	0.07	1	13	1	13	n	0.00	0	10	0	10	n	0.18	4	18	4	18	y	0.33	1	2	1	2	n	0.11	3	24	3	24	n	0.00	0	2	0	2	n	0.00	0	17	0	17	n	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	ENSMUSG00000040774.16	Cept1	chr3	protein_coding	choline/ethanolaminephosphotransferase 1
novel_NIR_11998	chr3	106413168;106421909	106421771;106438453	-	106413168;106420203	106420119;106438453	MXE	ENSMUST00000068301.11	novel	0.09	1.5	14.5	1;2	13;16	n	0.00	0.0	8.5	0;0	10;7	n	0.17	3.5	17.0	4;3	18;16	y	0.33	1.0	2.0	1;1	2;2	n	0.08	2.0	22.0	3;1	24;20	n	0.00	0.0	4.5	0;0	2;7	n	0.00	0.0	20.0	0;0	17;23	n	0.22	1.0	3.5	1;1	6;1	n	0.00	0.0	6.0	0;0	6;6	n	0.00	0.0	4.5	0;0	5;4	n	0.12	1.0	7.5	0;2	6;9	n	0.08	1.0	11.0	0;2	11;11	n	ENSMUSG00000040774.16	Cept1	chr3	protein_coding	choline/ethanolaminephosphotransferase 1
novel_NIR_11999	chr3	106421909	106438453	-	106420203	106438453	A3SS	ENSMUST00000068301.11	novel	0.11	2	16	2	16	n	0.00	0	7	0	7	n	0.16	3	16	3	16	n	0.33	1	2	1	2	n	0.05	1	20	1	20	n	0.00	0	7	0	7	n	0.00	0	23	0	23	n	0.50	1	1	1	1	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.18	2	9	2	9	y	0.15	2	11	2	11	y	ENSMUSG00000040774.16	Cept1	chr3	protein_coding	choline/ethanolaminephosphotransferase 1
novel_NIR_12000	chr3	106427366	106438453	-	106420203	106438453	A3SS	ENSMUST00000068301.11	novel	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.06	1	16	1	16	n	0.00	0	2	0	2	n	0.00	0	20	0	20	n	0.12	1	7	1	7	n	0.12	3	23	3	23	n	0.00	0	1	0	1	n	0.14	1	6	1	6	n	0.20	1	4	1	4	n	0.00	0	9	0	9	n	0.15	2	11	2	11	y	ENSMUSG00000040774.16	Cept1	chr3	protein_coding	choline/ethanolaminephosphotransferase 1
novel_NIR_12001	chr3	106433041	106438453	-	106420203	106438453	A3SS	ENSMUST00000068301.11	novel	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.00	0	16	0	16	n	0.33	1	2	1	2	n	0.00	0	20	0	20	n	0.00	0	7	0	7	n	0.00	0	23	0	23	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.18	2	9	2	9	y	0.08	1	11	1	11	n	ENSMUSG00000040774.16	Cept1	chr3	protein_coding	choline/ethanolaminephosphotransferase 1
novel_NIR_12002	chr3	106446919	106454739	-	106446912	106454739	A3SS	ENSMUST00000121231.8	novel	1.00	2	0	2	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	8	0	8	0	y	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	9	0	9	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	ENSMUSG00000040774.16	Cept1	chr3	protein_coding	choline/ethanolaminephosphotransferase 1
novel_NIR_12003	chr3	106446919	106454739	-	106446919	106454692	A5SS	ENSMUST00000141525.2	novel	0.50	2	2	2	2	y	0.57	4	3	4	3	y	-	-	-	-	-	-	1.00	8	0	8	0	y	0.29	5	12	5	12	y	0.50	1	1	1	1	n	0.50	9	9	9	9	y	0.62	5	3	5	3	y	0.00	0	2	0	2	n	0.80	4	1	4	1	y	0.22	2	7	2	7	y	0.33	2	4	2	4	y	ENSMUSG00000040774.16	Cept1	chr3	protein_coding	choline/ethanolaminephosphotransferase 1
novel_NIR_12004	chr3	106446919	106454739	-	106446919	106454996	A5SS	ENSMUST00000068301.11	novel	0.03	2	62	2	62	n	0.12	4	30	4	30	n	0.00	0	59	0	59	n	0.15	8	45	8	45	y	0.05	5	88	5	88	n	0.02	1	40	1	40	n	0.11	9	74	9	74	n	0.12	5	38	5	38	n	0.00	0	44	0	44	n	0.06	4	64	4	64	n	0.05	2	40	2	40	n	0.03	2	68	2	68	n	ENSMUSG00000040774.16	Cept1	chr3	protein_coding	choline/ethanolaminephosphotransferase 1
novel_NIR_12005	chr3	106446919	106455393	-	106446919	106454692	5pMXE	ENSMUST00000141525.2	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	4	0	4	0	y	0.08	1	12	1	12	n	0.00	0	1	0	1	n	0.31	4	9	4	9	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.22	2	7	2	7	y	0.33	2	4	2	4	y	ENSMUSG00000040774.16	Cept1	chr3	protein_coding	choline/ethanolaminephosphotransferase 1
novel_NIR_12006	chr3	106455482	106459472	+	106456301	106459472	A5SS&ES	ENSMUST00000151465.2	novel	0.20	1	4	1	4	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.86	6	1	6	1	y	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000027900.16	Dram2	chr3	protein_coding	DNA-damage regulated autophagy modulator 2
novel_NIR_12007	chr3	106455482	106459472	+	106457991	106459472	A5SS&ES	ENSMUST00000144746.8	novel	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.75	6	2	6	2	y	0.33	1	2	1	2	n	0.00	0	6	0	6	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000027900.16	Dram2	chr3	protein_coding	DNA-damage regulated autophagy modulator 2
novel_NIR_12008	chr3	106456301	106457815	+	106455236	106457815	A5SS	ENSMUST00000134396.8	novel	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000027900.16	Dram2	chr3	protein_coding	DNA-damage regulated autophagy modulator 2
novel_NIR_12009	chr3	106456301	106457815	+	106456301	106459472	A3SS	ENSMUST00000151465.2	novel	0.20	1	4	1	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	ENSMUSG00000027900.16	Dram2	chr3	protein_coding	DNA-damage regulated autophagy modulator 2
novel_NIR_12010	chr3	106459596	106469065	+	106459596	106462483	3pMXE	ENSMUST00000144746.8	novel	0.19	5	21	5	21	y	0.05	1	18	1	18	n	0.20	5	20	5	20	y	0.12	3	21	3	21	n	0.11	5	40	5	40	n	0.00	0	6	0	6	n	0.00	0	26	0	26	n	0.36	4	7	4	7	y	0.13	4	27	4	27	n	0.08	2	22	2	22	n	0.14	3	18	3	18	n	0.00	0	21	0	21	n	ENSMUSG00000027900.16	Dram2	chr3	protein_coding	DNA-damage regulated autophagy modulator 2
novel_NIR_12011	chr3	106473500	106478111	+	106473500	106480289	A3SS	ENSMUST00000029507.13	novel	0.14	4	24	4	24	n	0.07	2	25	2	25	n	0.06	1	16	1	16	n	0.00	0	31	0	31	n	0.15	6	33	6	33	y	0.00	0	12	0	12	n	0.12	5	35	5	35	n	0.00	0	17	0	17	n	0.00	0	22	0	22	n	0.00	0	41	0	41	n	0.03	1	30	1	30	n	0.00	0	43	0	43	n	ENSMUSG00000027900.16	Dram2	chr3	protein_coding	DNA-damage regulated autophagy modulator 2
novel_NIR_12012	chr3	106473500;106478170	106478111;106480289	+	106473500	106480289	cassetteExon	ENSMUST00000029507.13	novel	0.08	2.0	24	4;0	24	n	0.06	1.5	25	2;1	25	n	0.03	0.5	16	1;0	16	n	0.06	2.0	31	0;4	31	n	0.08	3.0	33	6;0	33	n	0.00	0.0	12	0;0	12	n	0.18	7.5	35	5;10	35	y	0.00	0.0	17	0;0	17	n	0.00	0.0	22	0;0	22	n	0.00	0.0	41	0;0	41	n	0.10	3.5	30	1;6	30	n	0.00	0.0	43	0;0	43	n	ENSMUSG00000027900.16	Dram2	chr3	protein_coding	DNA-damage regulated autophagy modulator 2
novel_NIR_12013	chr3	107127091	107142925	-	107127091	107128961	5pMXE	ENSMUST00000029504.9	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000046213.10	Cym	chr3	protein_coding	chymosin
novel_NIR_12014	chr3	107144529	107145352	-	107144529	107146894	A5SS	ENSMUST00000049852.10	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	8	0	8	0	y	1.00	1	0	1	0	n	ENSMUSG00000070368.10	Prok1	chr3	protein_coding	prokineticin 1
novel_NIR_12015	chr3	107144529	107145796	-	107144529	107145924	A5SS	ENSMUST00000197758.5	novel	0.40	2	3	2	3	y	0.22	2	7	2	7	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.33	3	6	3	6	y	ENSMUSG00000070368.10	Prok1	chr3	protein_coding	prokineticin 1
novel_NIR_12016	chr3	107144529	107145796	-	107144529	107146894	A5SS	ENSMUST00000049852.10	novel	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000070368.10	Prok1	chr3	protein_coding	prokineticin 1
novel_NIR_12017	chr3	107144529;107145550	107145352;107145924	-	107144529	107145924	cassetteExon	ENSMUST00000197758.5	novel	0.45	2.5	3	3;2	3	y	0.12	1.0	7	0;2	7	n	0.50	1.0	1	1;1	1	n	0.33	1.5	3	2;1	3	n	0.43	1.5	2	1;2	2	n	1.00	0.5	0	1;0	0	n	0.50	1.0	1	0;2	1	n	0.00	0.0	1	0;0	1	n	0.71	2.5	1	4;1	1	n	0.57	4.0	3	0;8	3	n	0.36	5.0	9	8;2	9	y	0.08	0.5	6	1;0	6	n	ENSMUSG00000070368.10	Prok1	chr3	protein_coding	prokineticin 1
novel_NIR_12018	chr3	107145550	107145924	-	107144529	107145924	A3SS	ENSMUST00000197758.5	novel	0.40	2	3	2	3	n	0.22	2	7	2	7	y	0.50	1	1	1	1	n	0.25	1	3	1	3	n	0.50	2	2	2	2	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.73	8	3	8	3	y	0.18	2	9	2	9	n	0.00	0	6	0	6	n	ENSMUSG00000070368.10	Prok1	chr3	protein_coding	prokineticin 1
novel_NIR_12019	chr3	107848597	107849449	-	107848642	107849449	A3SS	ENSMUST00000106684.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.22	2	7	2	7	y	ENSMUSG00000068762.12	Gstm6	chr3	protein_coding	glutathione S-transferase, mu 6
novel_NIR_12020	chr3	107848600	107849500	-	107848600	107849649	A5SS	ENSMUST00000155926.8	novel	1.00	4	0	4	0	y	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	6	0	6	0	y	ENSMUSG00000068762.12	Gstm6	chr3	protein_coding	glutathione S-transferase, mu 6
novel_NIR_12021	chr3	107848600	107849500	-	107848600	107850018	A5SS	ENSMUST00000106683.8	novel	0.29	4	10	4	10	y	0.22	2	7	2	7	y	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.29	2	5	2	5	y	0.14	1	6	1	6	n	0.55	6	5	6	5	y	0.00	0	6	0	6	n	0.09	1	10	1	10	n	0.22	4	14	4	14	y	0.17	3	15	3	15	y	0.32	6	13	6	13	y	ENSMUSG00000068762.12	Gstm6	chr3	protein_coding	glutathione S-transferase, mu 6
novel_NIR_12022	chr3	107951744	107951917	-	107951744	107952126	A5SS	ENSMUST00000106670.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	3	3	3	3	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027890.18	Gstm4	chr3	protein_coding	glutathione S-transferase, mu 4
novel_NIR_12023	chr3	107951744	107951917	-	107951744	107952161	A5SS	ENSMUST00000178808.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.75	3	1	3	1	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027890.18	Gstm4	chr3	protein_coding	glutathione S-transferase, mu 4
novel_NIR_12024	chr3	107951744	107952196	-	107951744	107952126	5pMXE	ENSMUST00000106670.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000027890.18	Gstm4	chr3	protein_coding	glutathione S-transferase, mu 4
novel_NIR_12025	chr3	107951744	107952196	-	107951744	107952161	5pMXE	ENSMUST00000178808.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000027890.18	Gstm4	chr3	protein_coding	glutathione S-transferase, mu 4
novel_NIR_12026	chr3	107992025	107993534	-	107988447	107993534	A3SS	ENSMUST00000102638.8	novel	0.00	0	16	0	16	n	0.00	0	12	0	12	n	0.00	0	30	0	30	n	0.00	0	22	0	22	n	0.00	0	15	0	15	n	0.14	1	6	1	6	n	0.00	0	25	0	25	n	0.15	2	11	2	11	y	0.00	0	14	0	14	n	0.08	1	12	1	12	n	0.09	1	10	1	10	n	0.00	0	17	0	17	n	ENSMUSG00000027889.18	Ampd2	chr3	protein_coding	adenosine monophosphate deaminase 2
novel_NIR_12027	chr3	107994207	108000510	+	108000389	108000510	5pMXE	ENSMUST00000145101.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	8	0	8	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000009108.16	Gnat2	chr3	protein_coding	guanine nucleotide binding protein, alpha transducing 2
novel_NIR_12028	chr3	107994207	108000510	+	108000409	108000510	5pMXE	ENSMUST00000058669.15	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	8	0	8	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000009108.16	Gnat2	chr3	protein_coding	guanine nucleotide binding protein, alpha transducing 2
novel_NIR_12029	chr3	108005411	108007304	+	108005411	108005627	3pMXE	ENSMUST00000151326.8	novel	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	15	0	15	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.21	3	11	3	11	y	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	ENSMUSG00000009108.16	Gnat2	chr3	protein_coding	guanine nucleotide binding protein, alpha transducing 2
novel_NIR_12030	chr3	108005411	108007304	+	108005411;108005756	108005627;108007304	ES	ENSMUST00000058669.15	novel	0.00	0	7.0	0	7;7	n	0.00	0	8.0	0	11;5	n	0.00	0	7.5	0	6;9	n	0.00	0	2.5	0	3;2	n	0.00	0	15.5	0	15;16	n	0.00	0	12.0	0	11;13	n	0.00	0	8.5	0	10;7	n	0.17	3	14.5	3	11;18	y	0.00	0	6.0	0	6;6	n	0.00	0	8.0	0	9;7	n	0.00	0	9.0	0	7;11	n	0.00	0	6.0	0	6;6	n	ENSMUSG00000009108.16	Gnat2	chr3	protein_coding	guanine nucleotide binding protein, alpha transducing 2
novel_NIR_12031	chr3	108107478	108107610	-	108107478	108107943	A5SS	ENSMUST00000106655.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000048796.8	Cyb561d1	chr3	protein_coding	cytochrome b-561 domain containing 1
novel_NIR_12032	chr3	108107478	108107610	-	108107478	108108076	A5SS	ENSMUST00000065664.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000048796.8	Cyb561d1	chr3	protein_coding	cytochrome b-561 domain containing 1
novel_NIR_12033	chr3	108207217	108215793	+	108191756	108215793	A5SS	ENSMUST00000135636.6	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.20	2	8	2	8	y	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000068747.15	Sort1	chr3	protein_coding	sortilin 1
novel_NIR_12034	chr3	108239276	108241885	+	108239276	108241882	A3SS	ENSMUST00000135636.6	novel	0.50	4	4	4	4	y	0.00	0	6	0	6	n	0.31	8	18	8	18	y	0.33	4	8	4	8	y	0.39	14	22	14	22	y	0.12	2	14	2	14	n	0.47	7	8	7	8	y	0.12	1	7	1	7	n	0.44	7	9	7	9	y	0.50	13	13	13	13	y	0.25	2	6	2	6	y	0.52	11	10	11	10	y	ENSMUSG00000068747.15	Sort1	chr3	protein_coding	sortilin 1
novel_NIR_12035	chr3	108334705	108335169	-	108334705	108335177	A5SS	ENSMUST00000102625.11	novel	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	24	0	24	n	0.18	2	9	2	9	y	0.06	1	16	1	16	n	0.00	0	4	0	4	n	0.00	0	20	0	20	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	25	0	25	n	ENSMUSG00000068739.14	Sars	chr3	protein_coding	seryl-aminoacyl-tRNA synthetase
novel_NIR_12036	chr3	108561367	108566462	+	108561367	108561908	A3SS&ES	ENSMUST00000029483.15	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000027884.17	Clcc1	chr3	protein_coding	chloride channel CLIC-like 1
novel_NIR_12037	chr3	108569349	108575279	+	108569349	108569825	3pMXE	ENSMUST00000125274.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.88	7	1	7	1	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000027884.17	Clcc1	chr3	protein_coding	chloride channel CLIC-like 1
novel_NIR_12038	chr3	108784009	108787560	-	108784009	108788642	A5SS	ENSMUST00000180063.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000045326.14	Fndc7	chr3	protein_coding	fibronectin type III domain containing 7
novel_NIR_12039	chr3	108813304	108813388	-	108812650	108813388	A3SS	ENSMUST00000156808.2	novel	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000027881.15	Prpf38b	chr3	protein_coding	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B
novel_NIR_12040	chr3	108813304	108813388	-	108813304	108815103	A5SS	ENSMUST00000199735.5	novel	0.00	0	11	0	11	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.40	2	3	2	3	y	0.00	0	6	0	6	n	1.00	1	0	1	0	n	0.00	0	4	0	4	n	0.50	1	1	1	1	n	0.00	0	8	0	8	n	ENSMUSG00000027881.15	Prpf38b	chr3	protein_coding	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B
novel_NIR_12041	chr3	108815720	108817972	-	108815720	108817659	A5SS&ES	ENSMUST00000129273.8	novel	0.00	0	2	0	2	n	0.09	1	10	1	10	n	0.00	0	4	0	4	n	0.05	1	18	1	18	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.15	2	11	2	11	n	0.18	2	9	2	9	y	0.00	0	11	0	11	n	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.18	2	9	2	9	y	ENSMUSG00000027881.15	Prpf38b	chr3	protein_coding	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B
novel_NIR_12042	chr3	108815720;108818196	108817972;108818480	-	108815720;108817711	108817659;108818480	MXE	ENSMUST00000129273.8	novel	0.00	0.0	4.0	0;0	2;6	n	0.06	0.5	7.5	1;0	10;5	n	0.00	0.0	4.0	0;0	4;4	n	0.03	0.5	17.0	1;0	18;16	n	0.00	0.0	10.0	0;0	13;7	n	0.00	0.0	4.0	0;0	6;2	n	0.33	3.5	7.0	2;5	11;3	y	0.12	1.0	7.5	2;0	9;6	n	0.00	0.0	7.0	0;0	11;3	n	0.12	0.5	3.5	1;0	4;3	n	0.00	0.0	3.5	0;0	4;3	n	0.14	1.0	6.0	2;0	9;3	n	ENSMUSG00000027881.15	Prpf38b	chr3	protein_coding	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B
novel_NIR_12043	chr3	113325424	113363086	-	113325424	113325755	5pMXE	ENSMUST00000132353.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	ENSMUSG00000070360.6	Amy2a1	chr3	protein_coding	amylase 2a1
novel_NIR_12044	chr3	113363706	113364343	-	113363706	113367820	A5SS	ENSMUST00000142505.9	novel	0.12	1	7	1	7	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.05	1	19	1	19	n	0.00	0	5	0	5	n	0.00	0	18	0	18	n	0.23	3	10	3	10	y	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.07	1	13	1	13	n	0.00	0	13	0	13	n	ENSMUSG00000074264.13	Amy1	chr3	protein_coding	amylase 1, salivary
novel_NIR_12045	chr3	113363706	113364343	-	113363706	113371350	A5SS	ENSMUST00000067980.12	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000074264.13	Amy1	chr3	protein_coding	amylase 1, salivary
novel_NIR_12046	chr3	113363706	113364343	-	113363706	113399221	A5SS	ENSMUST00000174147.2	novel	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.75	3	1	3	1	y	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.25	1	3	1	3	n	0.00	0	5	0	5	n	ENSMUSG00000074264.13	Amy1	chr3	protein_coding	amylase 1, salivary
novel_NIR_12047	chr3	113363706	113365577	-	113363706	113367820	A5SS	ENSMUST00000142505.9	novel	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.10	1	9	1	9	n	0.00	0	5	0	5	n	0.17	4	19	4	19	y	0.00	0	5	0	5	n	0.00	0	18	0	18	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.35	6	11	6	11	y	0.00	0	13	0	13	n	0.07	1	13	1	13	n	ENSMUSG00000074264.13	Amy1	chr3	protein_coding	amylase 1, salivary
novel_NIR_12048	chr3	113363706	113365577	-	113363706	113371350	A5SS	ENSMUST00000067980.12	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000074264.13	Amy1	chr3	protein_coding	amylase 1, salivary
novel_NIR_12049	chr3	113363706	113365577	-	113363706	113399221	A5SS	ENSMUST00000174147.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.12	1	7	1	7	n	0.00	0	3	0	3	n	0.57	4	3	4	3	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.46	6	7	6	7	y	0.00	0	3	0	3	n	0.17	1	5	1	5	n	ENSMUSG00000074264.13	Amy1	chr3	protein_coding	amylase 1, salivary
novel_NIR_12050	chr3	113363706	113365938	-	113363706	113367820	A5SS	ENSMUST00000142505.9	novel	0.50	7	7	7	7	y	0.00	0	7	0	7	n	0.50	9	9	9	9	n	0.58	7	5	7	5	y	0.05	1	19	1	19	n	0.17	1	5	1	5	n	0.31	8	18	8	18	y	0.29	4	10	4	10	y	0.23	3	10	3	10	y	0.56	14	11	14	11	y	0.13	2	13	2	13	n	0.07	1	13	1	13	n	ENSMUSG00000074264.13	Amy1	chr3	protein_coding	amylase 1, salivary
novel_NIR_12051	chr3	113363706	113365938	-	113363706	113371350	A5SS	ENSMUST00000067980.12	novel	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	9	0	9	0	y	1.00	7	0	7	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	8	0	8	0	y	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	14	0	14	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000074264.13	Amy1	chr3	protein_coding	amylase 1, salivary
novel_NIR_12052	chr3	113363706	113365938	-	113363706	113399221	A5SS	ENSMUST00000174147.2	novel	0.78	7	2	7	2	y	-	-	-	-	-	-	0.56	9	7	9	7	y	0.70	7	3	7	3	y	0.25	1	3	1	3	n	0.25	1	3	1	3	n	0.89	8	1	8	1	y	0.80	4	1	4	1	y	0.60	3	2	3	2	y	0.67	14	7	14	7	y	0.40	2	3	2	3	y	0.17	1	5	1	5	n	ENSMUSG00000074264.13	Amy1	chr3	protein_coding	amylase 1, salivary
novel_NIR_12053	chr3	113400945	113401989	-	113400948	113401989	A3SS	ENSMUST00000092154.10	novel	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.17	1	5	1	5	n	0.00	0	17	0	17	n	0.00	0	6	0	6	n	0.00	0	18	0	18	n	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.18	2	9	2	9	y	ENSMUSG00000027981.15	Rnpc3	chr3	protein_coding	RNA-binding region (RNP1, RRM) containing 3
novel_NIR_12054	chr3	115680021	115681413	-	115675487	115681413	A3SS	ENSMUST00000185681.2	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000054426.12	A930005H10Rik	chr3	lncRNA	RIKEN cDNA A930005H10 gene
novel_NIR_12055	chr3	115680024	115681413	-	115675487	115681413	A3SS	ENSMUST00000185681.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	1.00	4	0	4	0	y	0.00	0	3	0	3	n	ENSMUSG00000054426.12	A930005H10Rik	chr3	lncRNA	RIKEN cDNA A930005H10 gene
novel_NIR_12056	chr3	115680029	115681413	-	115675487	115681413	A3SS	ENSMUST00000185681.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000054426.12	A930005H10Rik	chr3	lncRNA	RIKEN cDNA A930005H10 gene
novel_NIR_12057	chr3	115680029	115681425	-	115675487	115681425	A3SS	ENSMUST00000185424.2	novel	0.30	9	21	9	21	y	0.44	14	18	14	18	y	0.42	11	15	11	15	y	0.45	9	11	9	11	y	0.47	18	20	18	20	y	0.67	14	7	14	7	y	0.40	19	29	19	29	y	0.42	10	14	10	14	y	0.48	12	13	12	13	y	0.38	18	30	18	30	y	0.51	22	21	22	21	y	0.46	16	19	16	19	y	ENSMUSG00000054426.12	A930005H10Rik	chr3	lncRNA	RIKEN cDNA A930005H10 gene
novel_NIR_12058	chr3	115680029	115681425	-	115680024	115681425	A3SS	ENSMUST00000188260.7	novel	0.16	9	46	9	46	y	0.40	14	21	14	21	y	0.32	11	23	11	23	y	0.21	9	33	9	33	y	0.38	18	30	18	30	y	0.48	14	15	14	15	y	0.30	19	44	19	44	y	0.32	10	21	10	21	y	0.41	12	17	12	17	y	0.29	18	44	18	44	y	0.47	22	25	22	25	y	0.32	16	34	16	34	y	ENSMUSG00000054426.12	A930005H10Rik	chr3	lncRNA	RIKEN cDNA A930005H10 gene
novel_NIR_12059	chr3	115719359	115720346	+	115718900	115720346	A5SS	ENSMUST00000189799.7	novel	0.00	0	23	0	23	n	0.00	0	24	0	24	n	0.00	0	62	0	62	n	0.06	1	16	1	16	n	0.00	0	28	0	28	n	0.18	3	14	3	14	y	0.00	0	28	0	28	n	0.05	1	20	1	20	n	0.11	2	17	2	17	n	0.00	0	34	0	34	n	0.00	0	28	0	28	n	0.00	0	23	0	23	n	ENSMUSG00000033554.18	Dph5	chr3	protein_coding	diphthamide biosynthesis 5
novel_NIR_12060	chr3	115733341	115740190	-	115733341	115736053	5pMXE	ENSMUST00000198571.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000054414.5	Slc30a7	chr3	protein_coding	solute carrier family 30 (zinc transporter), member 7
novel_NIR_12061	chr3	115733341	115747701	-	115733341	115736053	5pMXE	ENSMUST00000198571.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	7	0	7	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000054414.5	Slc30a7	chr3	protein_coding	solute carrier family 30 (zinc transporter), member 7
novel_NIR_12062	chr3	116301500	116306428	-	116301500	116301594	5pMXE	ENSMUST00000000348.15	novel	0.00	0	9	0	9	n	0.17	2	10	2	10	y	0.00	0	16	0	16	n	0.10	1	9	1	9	n	0.11	2	16	2	16	n	0.00	0	11	0	11	n	0.00	0	27	0	27	n	0.00	0	15	0	15	n	0.00	0	11	0	11	n	0.04	1	25	1	25	n	0.00	0	14	0	14	n	0.14	3	18	3	18	n	ENSMUSG00000000339.15	Rtca	chr3	protein_coding	RNA 3'-terminal phosphate cyclase
novel_NIR_12063	chr3	116306840	116317001	+	116306840	116326904	A3SS	ENSMUST00000197201.5	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.83	5	1	5	1	y	0.62	5	3	5	3	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000000340.11	Dbt	chr3	protein_coding	dihydrolipoamide branched chain transacylase E2
novel_NIR_12064	chr3	116363804	116371068	+	116363804	116364487	3pMXE	ENSMUST00000203327.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.20	2	8	2	8	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000027961.8	Lrrc39	chr3	protein_coding	leucine rich repeat containing 39
novel_NIR_12065	chr3	116363804	116371068	+	116363804;116364623	116364487;116371068	ES	ENSMUST00000029573.8	novel	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	0.00	0	1.0	0	2;0	n	-	-	-	-	-	-	0.24	2	6.5	2	8;5	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1.0	0	2;0	n	0.00	0	1.0	0	2;0	n	0.00	0	0.5	0	1;0	n	ENSMUSG00000027961.8	Lrrc39	chr3	protein_coding	leucine rich repeat containing 39
novel_NIR_12066	chr3	116364634	116371068	+	116364623	116371068	A5SS	ENSMUST00000029573.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.29	2	5	2	5	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027961.8	Lrrc39	chr3	protein_coding	leucine rich repeat containing 39
novel_NIR_12067	chr3	116445148	116447022	-	116445148	116471512	A5SS	ENSMUST00000140672.3	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000105103.2	Gm43191	chr3	protein_coding	predicted gene 43191
novel_NIR_12068	chr3	116445148	116455691	-	116445148	116471512	A5SS	ENSMUST00000140672.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000105103.2	Gm43191	chr3	protein_coding	predicted gene 43191
novel_NIR_12069	chr3	116469673	116471512	-	116445148	116471512	A3SS	ENSMUST00000140672.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000105103.2	Gm43191	chr3	protein_coding	predicted gene 43191
novel_NIR_12070	chr3	116488283	116506266	-	116488283	116505332	5pMXE	ENSMUST00000153108.6	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	6	0	6	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	2	0	2	0	y	0.67	2	1	2	1	y	1.00	3	0	3	0	y	1.00	5	0	5	0	y	1.00	1	0	1	0	n	ENSMUSG00000027957.14	Slc35a3	chr3	protein_coding	solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3
novel_NIR_12071	chr3	116488283	116506266	-	116488283	116505732	A5SS	ENSMUST00000029569.9	novel	0.04	1	24	1	24	n	0.00	0	15	0	15	n	0.05	3	52	3	52	n	0.06	3	51	3	51	n	0.08	6	67	6	67	n	0.06	2	33	2	33	n	0.15	5	28	5	28	y	0.05	2	42	2	42	n	0.08	2	23	2	23	n	0.06	3	47	3	47	n	0.17	5	25	5	25	y	0.02	1	41	1	41	n	ENSMUSG00000027957.14	Slc35a3	chr3	protein_coding	solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3
novel_NIR_12072	chr3	116506108	116506266	-	116506108	116506406	A5SS	ENSMUST00000169530.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000027957.14	Slc35a3	chr3	protein_coding	solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3
novel_NIR_12073	chr3	116540162	116544047	-	116542692	116544047	3pMXE	ENSMUST00000161336.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033400.15	Agl	chr3	protein_coding	amylo-1,6-glucosidase, 4-alpha-glucanotransferase
novel_NIR_12074	chr3	116655358	116659838	+	116653283	116659838	A5SS	ENSMUST00000040260.11	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	15	0	15	0	y	1.00	12	0	12	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	9	0	9	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	ENSMUSG00000033386.11	Frrs1	chr3	protein_coding	ferric-chelate reductase 1
novel_NIR_12075	chr3	116678938	116679276	+	116678938	116684554	A3SS	ENSMUST00000040260.11	novel	0.00	0	14	0	14	n	0.23	3	10	3	10	y	0.02	1	45	1	45	n	0.00	0	19	0	19	n	0.03	1	32	1	32	n	0.00	0	24	0	24	n	0.13	4	27	4	27	n	0.00	0	27	0	27	n	0.08	2	24	2	24	n	0.00	0	30	0	30	n	0.04	1	24	1	24	n	0.03	1	31	1	31	n	ENSMUSG00000033386.11	Frrs1	chr3	protein_coding	ferric-chelate reductase 1
novel_NIR_12076	chr3	116680339	116684554	+	116678938	116684554	A5SS	ENSMUST00000040260.11	novel	0.07	1	14	1	14	n	0.17	2	10	2	10	y	0.04	2	45	2	45	n	0.00	0	19	0	19	n	0.03	1	32	1	32	n	0.00	0	24	0	24	n	0.07	2	27	2	27	n	0.04	1	27	1	27	n	0.04	1	24	1	24	n	0.00	0	30	0	30	n	0.00	0	24	0	24	n	0.14	5	31	5	31	n	ENSMUSG00000033386.11	Frrs1	chr3	protein_coding	ferric-chelate reductase 1
novel_NIR_12077	chr3	116762269	116762560	-	116746786	116762560	A3SS	ENSMUST00000143611.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	5	0	5	n	1.00	3	0	3	0	y	0.20	1	4	1	4	n	0.60	3	2	3	2	y	0.00	0	6	0	6	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	ENSMUSG00000033377.15	Palmd	chr3	protein_coding	palmdelphin
novel_NIR_12078	chr3	116762306	116762560	-	116746786	116762560	A3SS	ENSMUST00000143611.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.00	0	6	0	6	n	-	-	-	-	-	-	-	-	-	-	-	-	0.25	2	6	2	6	y	-	-	-	-	-	-	0.60	3	2	3	2	y	ENSMUSG00000033377.15	Palmd	chr3	protein_coding	palmdelphin
novel_NIR_12079	chr3	118322336	118324025	+	118322336	118323377	3pMXE	ENSMUST00000181310.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000097311.8	Gm26871	chr3	lncRNA	predicted gene, 26871
novel_NIR_12080	chr3	120949706	120949816	-	120949706	120949862	A5SS	ENSMUST00000164573.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000028133.18	Rwdd3	chr3	protein_coding	RWD domain containing 3
novel_NIR_12081	chr3	120950165	120952285	-	120950165	120952417	A5SS	ENSMUST00000106466.10	novel	0.00	0	5	0	5	n	0.14	1	6	1	6	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.11	1	8	1	8	n	0.05	1	19	1	19	n	0.25	2	6	2	6	y	0.24	4	13	4	13	y	ENSMUSG00000028133.18	Rwdd3	chr3	protein_coding	RWD domain containing 3
novel_NIR_12082	chr3	120950165	120952285	-	120950165	120952464	A5SS	ENSMUST00000170781.2	novel	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.33	1	2	1	2	n	1.00	2	0	2	0	y	1.00	4	0	4	0	y	ENSMUSG00000028133.18	Rwdd3	chr3	protein_coding	RWD domain containing 3
novel_NIR_12083	chr3	120950165	120965241	-	120950165	120952417	5pMXE	ENSMUST00000164573.8	novel	0.00	0	5	0	5	n	0.25	2	6	2	6	y	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.67	8	4	8	4	y	-	-	-	-	-	-	0.00	0	8	0	8	n	0.05	1	19	1	19	n	0.14	1	6	1	6	n	0.13	2	13	2	13	n	ENSMUSG00000028133.18	Rwdd3	chr3	protein_coding	RWD domain containing 3
novel_NIR_12084	chr3	120950165	120965241	-	120950165;120952904	120952417;120965241	ES	ENSMUST00000106466.10	novel	0.00	0	5.0	0	5;5	n	0.40	2	3.0	2	6;0	y	0.00	0	3.5	0	3;4	n	0.00	0	6.0	0	9;3	n	0.00	0	8.5	0	7;10	n	0.00	0	5.0	0	4;6	n	0.55	8	6.5	8	4;9	y	0.00	0	2.5	0	0;5	n	0.00	0	6.5	0	8;5	n	0.06	1	14.5	1	19;10	n	0.11	1	8.0	1	6;10	n	0.20	2	8.0	2	13;3	y	ENSMUSG00000028133.18	Rwdd3	chr3	protein_coding	RWD domain containing 3
novel_NIR_12085	chr3	120950165	120965241	-	120950165;120952904	120952464;120965241	ES	ENSMUST00000170781.2	novel	0.00	0	3.5	0	2;5	n	1.00	2	0.0	2	0;0	y	0.00	0	2.0	0	0;4	n	0.00	0	1.5	0	0;3	n	0.00	0	5.0	0	0;10	n	0.00	0	3.0	0	0;6	n	0.59	8	5.5	8	2;9	y	0.00	0	2.5	0	0;5	n	0.00	0	2.5	0	0;5	n	0.14	1	6.0	1	2;10	n	0.17	1	5.0	1	0;10	n	0.57	2	1.5	2	0;3	y	ENSMUSG00000028133.18	Rwdd3	chr3	protein_coding	RWD domain containing 3
novel_NIR_12086	chr3	120960061	120965241	-	120952904	120965241	A3SS	ENSMUST00000106466.10	novel	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.17	2	10	2	10	y	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.17	2	10	2	10	y	0.00	0	10	0	10	n	0.00	0	3	0	3	n	ENSMUSG00000028133.18	Rwdd3	chr3	protein_coding	RWD domain containing 3
novel_NIR_12087	chr3	120960061	120965241	-	120953625	120965241	A3SS	ENSMUST00000164925.9	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	4	0	4	n	-	-	-	-	-	-	ENSMUSG00000028133.18	Rwdd3	chr3	protein_coding	RWD domain containing 3
novel_NIR_12088	chr3	120960061	120965241	-	120965068	120965241	A3SS&ES	ENSMUST00000106467.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028133.18	Rwdd3	chr3	protein_coding	RWD domain containing 3
novel_NIR_12089	chr3	121029413	121053726	-	121029413	121040651	A5SS&ES	ENSMUST00000135818.8	novel	-	-	-	-	-	-	0.33	1	2	1	2	n	0.33	2	4	2	4	y	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.11	1	8	1	8	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000028132.16	Tlcd4	chr3	protein_coding	TLC domain containing 4
novel_NIR_12090	chr3	121029413	121053726	-	121029413	121046334	5pMXE	ENSMUST00000155309.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028132.16	Tlcd4	chr3	protein_coding	TLC domain containing 4
novel_NIR_12091	chr3	121029413	121053726	-	121029413	121065980	A5SS	ENSMUST00000151058.2	novel	-	-	-	-	-	-	0.50	1	1	1	1	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028132.16	Tlcd4	chr3	protein_coding	TLC domain containing 4
novel_NIR_12092	chr3	121029413	121053726	-	121029413	121073767	A5SS	ENSMUST00000123427.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028132.16	Tlcd4	chr3	protein_coding	TLC domain containing 4
novel_NIR_12093	chr3	121029413	121053726	-	121029413	121076549	A5SS	ENSMUST00000137234.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028132.16	Tlcd4	chr3	protein_coding	TLC domain containing 4
novel_NIR_12094	chr3	121029413	121056771	-	121029413	121040651	A5SS&ES	ENSMUST00000135818.8	novel	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.25	2	6	2	6	y	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000028132.16	Tlcd4	chr3	protein_coding	TLC domain containing 4
novel_NIR_12095	chr3	121029413	121056771	-	121029413	121046334	5pMXE	ENSMUST00000155309.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028132.16	Tlcd4	chr3	protein_coding	TLC domain containing 4
novel_NIR_12096	chr3	121029413	121056771	-	121029413	121065980	A5SS	ENSMUST00000151058.2	novel	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028132.16	Tlcd4	chr3	protein_coding	TLC domain containing 4
novel_NIR_12097	chr3	121029413	121056771	-	121029413	121073767	A5SS	ENSMUST00000123427.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028132.16	Tlcd4	chr3	protein_coding	TLC domain containing 4
novel_NIR_12098	chr3	121029413	121056771	-	121029413	121076549	A5SS	ENSMUST00000137234.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028132.16	Tlcd4	chr3	protein_coding	TLC domain containing 4
novel_NIR_12099	chr3	121029413	121070637	-	121029413	121040651	A5SS&ES	ENSMUST00000135818.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	4	4	4	4	y	0.00	0	1	0	1	n	0.54	7	6	7	6	y	0.71	5	2	5	2	y	0.67	8	4	8	4	y	0.27	3	8	3	8	y	0.00	0	3	0	3	n	0.75	6	2	6	2	y	0.33	1	2	1	2	n	0.00	0	1	0	1	n	ENSMUSG00000028132.16	Tlcd4	chr3	protein_coding	TLC domain containing 4
novel_NIR_12100	chr3	121029413	121070637	-	121029413	121046334	5pMXE	ENSMUST00000155309.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	1.00	5	0	5	0	y	1.00	8	0	8	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000028132.16	Tlcd4	chr3	protein_coding	TLC domain containing 4
novel_NIR_12101	chr3	121029413	121070637	-	121029413	121056349	5pMXE	ENSMUST00000128909.8	novel	0.00	0	33	0	33	n	0.00	0	24	0	24	n	0.04	4	90	4	90	n	0.00	0	40	0	40	n	0.10	7	63	7	63	n	0.06	5	78	5	78	n	0.16	8	42	8	42	y	0.06	3	46	3	46	n	0.00	0	21	0	21	n	0.08	6	70	6	70	n	0.04	1	23	1	23	n	0.00	0	47	0	47	n	ENSMUSG00000028132.16	Tlcd4	chr3	protein_coding	TLC domain containing 4
novel_NIR_12102	chr3	121029413	121070637	-	121029413	121056823	5pMXE	ENSMUST00000029777.14	novel	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.08	4	49	4	49	n	0.00	0	33	0	33	n	0.12	7	49	7	49	n	0.10	5	45	5	45	n	0.18	8	36	8	36	y	0.06	3	45	3	45	n	0.00	0	15	0	15	n	0.21	6	23	6	23	y	0.05	1	21	1	21	n	0.00	0	23	0	23	n	ENSMUSG00000028132.16	Tlcd4	chr3	protein_coding	TLC domain containing 4
novel_NIR_12103	chr3	121029413	121070637	-	121029413	121065980	A5SS&ES	ENSMUST00000151058.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	4	2	4	2	y	-	-	-	-	-	-	0.88	7	1	7	1	y	1.00	5	0	5	0	y	1.00	8	0	8	0	y	1.00	3	0	3	0	y	0.00	0	2	0	2	n	1.00	6	0	6	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000028132.16	Tlcd4	chr3	protein_coding	TLC domain containing 4
novel_NIR_12104	chr3	121029413	121070637	-	121029413	121073767	A5SS	ENSMUST00000123427.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	1.00	5	0	5	0	y	1.00	8	0	8	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000028132.16	Tlcd4	chr3	protein_coding	TLC domain containing 4
novel_NIR_12105	chr3	121029413	121070637	-	121029413	121076549	A5SS	ENSMUST00000137234.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	1.00	5	0	5	0	y	1.00	8	0	8	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000028132.16	Tlcd4	chr3	protein_coding	TLC domain containing 4
novel_NIR_12106	chr3	121040735	121056349	-	121040735	121073990	A5SS	ENSMUST00000135818.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028132.16	Tlcd4	chr3	protein_coding	TLC domain containing 4
novel_NIR_12107	chr3	121219663	121243598	+	121221136	121243598	5pMXE	ENSMUST00000198649.5	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000053931.12	Cnn3	chr3	protein_coding	calponin 3, acidic
novel_NIR_12108	chr3	121250876	121251438	+	121250861	121251438	A5SS	ENSMUST00000199499.2	novel	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	ENSMUSG00000053931.12	Cnn3	chr3	protein_coding	calponin 3, acidic
novel_NIR_12109	chr3	121315607	121318476	-	121307466	121318476	A3SS	ENSMUST00000039197.9	novel	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	17	0	17	n	0.00	0	21	0	21	n	0.00	0	13	0	13	n	0.04	1	25	1	25	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.29	5	12	5	12	y	ENSMUSG00000039865.9	Slc44a3	chr3	protein_coding	solute carrier family 44, member 3
novel_NIR_12110	chr3	121315607	121318476	-	121316170	121318476	A3SS	ENSMUST00000199422.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.83	5	1	5	1	y	ENSMUSG00000039865.9	Slc44a3	chr3	protein_coding	solute carrier family 44, member 3
novel_NIR_12111	chr3	121590134	121607845	-	121590134	121608369	A5SS	ENSMUST00000195965.2	novel	0.08	1	11	1	11	n	0.00	0	6	0	6	n	0.00	0	21	0	21	n	0.17	3	15	3	15	y	0.08	2	23	2	23	n	0.08	1	11	1	11	n	0.27	7	19	7	19	y	0.12	1	7	1	7	n	0.22	2	7	2	7	y	0.09	3	29	3	29	n	0.00	0	11	0	11	n	0.06	1	17	1	17	n	ENSMUSG00000028127.11	Abcd3	chr3	protein_coding	ATP-binding cassette, sub-family D (ALD), member 3
novel_NIR_12112	chr3	121761606	121766194	+	121761606	121775464	A3SS	ENSMUST00000196479.5	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000039831.17	Arhgap29	chr3	protein_coding	Rho GTPase activating protein 29
novel_NIR_12113	chr3	121767764	121770814	+	121767764	121775464	A3SS	ENSMUST00000037958.14	novel	0.15	2	11	2	11	y	0.81	13	3	13	3	y	0.06	2	31	2	31	n	0.30	10	23	10	23	y	0.28	12	31	12	31	y	0.00	0	10	0	10	n	0.21	7	27	7	27	y	0.06	1	17	1	17	n	0.19	5	21	5	21	y	0.31	10	22	10	22	y	0.14	4	24	4	24	n	0.16	6	31	6	31	y	ENSMUSG00000039831.17	Arhgap29	chr3	protein_coding	Rho GTPase activating protein 29
novel_NIR_12114	chr3	122049259	122050321	+	122049259	122050325	A3SS	ENSMUST00000137540.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.50	4	4	4	4	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	0.25	1	3	1	3	n	ENSMUSG00000028124.16	Gclm	chr3	protein_coding	glutamate-cysteine ligase, modifier subunit
novel_NIR_12115	chr3	122049259	122050375	+	122049259	122050325	A3SS	ENSMUST00000137540.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00	0	3	0	3	n	ENSMUSG00000028124.16	Gclm	chr3	protein_coding	glutamate-cysteine ligase, modifier subunit
novel_NIR_12116	chr3	122049259	122052859	+	122049259	122050325	3pMXE	ENSMUST00000137540.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	3	0	3	n	ENSMUSG00000028124.16	Gclm	chr3	protein_coding	glutamate-cysteine ligase, modifier subunit
novel_NIR_12117	chr3	122052940	122055317	+	122052940	122056249	A3SS	ENSMUST00000199699.5	novel	-	-	-	-	-	-	1.00	4	0	4	0	y	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.33	1	2	1	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000028124.16	Gclm	chr3	protein_coding	glutamate-cysteine ligase, modifier subunit
novel_NIR_12118	chr3	122052940	122055535	+	122052940	122056249	A3SS	ENSMUST00000199699.5	novel	1.00	4	0	4	0	y	1.00	10	0	10	0	y	0.60	3	2	3	2	y	1.00	9	0	9	0	y	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	0.71	5	2	5	2	y	1.00	5	0	5	0	y	1.00	7	0	7	0	y	ENSMUSG00000028124.16	Gclm	chr3	protein_coding	glutamate-cysteine ligase, modifier subunit
novel_NIR_12119	chr3	122333948	122335774	-	122334573	122335774	A3SS	ENSMUST00000197259.5	novel	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.67	2	1	2	1	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	ENSMUSG00000039735.17	Fnbp1l	chr3	protein_coding	formin binding protein 1-like
novel_NIR_12120	chr3	122360479	122367438	+	122360479	122368175	A3SS	ENSMUST00000196200.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000106194.2	Gm43569	chr3	lncRNA	predicted gene 43569
novel_NIR_12121	chr3	122383892	122423275	-	122416630	122423275	3pMXE	ENSMUST00000199116.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.00	0	7	0	7	n	ENSMUSG00000106365.2	Gm43568	chr3	lncRNA	predicted gene 43568
novel_NIR_12122	chr3	122383892	122423275	-	122421217	122423275	3pMXE	ENSMUST00000198040.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000106365.2	Gm43568	chr3	lncRNA	predicted gene 43568
novel_NIR_12123	chr3	122383892	122423275	-	122422490	122423275	3pMXE	ENSMUST00000198427.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000106365.2	Gm43568	chr3	lncRNA	predicted gene 43568
novel_NIR_12124	chr3	122416564	122423275	-	122416630	122423275	A3SS	ENSMUST00000199116.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.38	3	5	3	5	y	0.00	0	3	0	3	n	0.00	0	7	0	7	n	ENSMUSG00000106365.2	Gm43568	chr3	lncRNA	predicted gene 43568
novel_NIR_12125	chr3	122416564	122423275	-	122421217	122423275	3pMXE	ENSMUST00000198040.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000106365.2	Gm43568	chr3	lncRNA	predicted gene 43568
novel_NIR_12126	chr3	122416564	122423275	-	122422490	122423275	3pMXE	ENSMUST00000198427.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000106365.2	Gm43568	chr3	lncRNA	predicted gene 43568
novel_NIR_12127	chr3	122755081	122757904	-	122755081;122756667	122756533;122757904	ES	ENSMUST00000090379.7	novel	0.00	0	1.5	0	2;1	n	0.00	0	1.5	0	2;1	n	0.00	0	10.5	0	10;11	n	0.00	0	5.5	0	7;4	n	0.10	1	9.0	1	10;8	n	0.00	0	4.5	0	3;6	n	0.00	0	10.5	0	11;10	n	0.00	0	5.0	0	3;7	n	0.40	2	3.0	2	6;0	y	0.40	3	4.5	3	3;6	y	0.00	0	2.5	0	5;0	n	0.00	0	9.5	0	13;6	n	ENSMUSG00000039701.12	Usp53	chr3	protein_coding	ubiquitin specific peptidase 53
novel_NIR_12128	chr3	122755081	122757904	-	122756667	122757904	A3SS&ES	ENSMUST00000199329.5	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.11	1	8	1	8	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	1.00	2	0	2	0	y	0.33	3	6	3	6	y	-	-	-	-	-	-	0.00	0	6	0	6	n	ENSMUSG00000039701.12	Usp53	chr3	protein_coding	ubiquitin specific peptidase 53
novel_NIR_12129	chr3	122762898	122763501	-	122762898	122776334	A5SS	ENSMUST00000199329.5	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000039701.12	Usp53	chr3	protein_coding	ubiquitin specific peptidase 53
novel_NIR_12130	chr3	122762898	122763501	-	122762898	122777931	A5SS	ENSMUST00000090379.7	novel	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	ENSMUSG00000039701.12	Usp53	chr3	protein_coding	ubiquitin specific peptidase 53
novel_NIR_12131	chr3	123169884	123174297	-	123169884;123173956	123173869;123174297	ES	ENSMUST00000090371.14	novel	0.00	0	8.5	0	8;9	n	0.13	1	6.5	1	8;5	n	0.09	1	10.0	1	7;13	n	0.00	0	9.0	0	12;6	n	0.00	0	11.0	0	13;9	n	0.00	0	9.5	0	9;10	n	0.21	2	7.5	2	9;6	y	0.00	0	8.0	0	7;9	n	0.00	0	8.5	0	10;7	n	0.07	1	13.0	1	13;13	n	0.38	3	5.0	3	7;3	y	0.00	0	8.0	0	8;8	n	ENSMUSG00000028114.17	Mettl14	chr3	protein_coding	methyltransferase like 14
novel_NIR_12132	chr3	126635222	126636609	+	126635222	126636407	A3SS	ENSMUST00000199300.5	novel	0.17	2	10	2	10	y	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	ENSMUSG00000053819.17	Camk2d	chr3	protein_coding	calcium/calmodulin-dependent protein kinase II, delta
novel_NIR_12133	chr3	126955055	126955328	-	126898511	126955328	A3SS	ENSMUST00000182994.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032826.20	Ank2	chr3	protein_coding	ankyrin 2, brain
novel_NIR_12134	chr3	127467131	127473010	-	127467131;127471488	127471335;127473010	ES	ENSMUST00000198955.5	novel	0.00	0	6.5	0	6;7	n	0.00	0	9.5	0	10;9	n	0.07	10	136.5	10	140;133	n	0.00	0	14.0	0	11;17	n	0.16	6	31.0	6	32;30	y	0.09	7	74.0	7	84;64	n	0.04	1	22.0	1	22;22	n	0.05	3	63.5	3	60;67	n	0.00	0	4.0	0	1;7	n	0.00	0	6.5	0	7;6	n	0.00	0	4.5	0	7;2	n	0.00	0	12.0	0	16;8	n	ENSMUSG00000028028.12	Alpk1	chr3	protein_coding	alpha-kinase 1
novel_NIR_12135	chr3	127471488;127472667	127472481;127473010	-	127471488	127473010	cassetteExon	ENSMUST00000198955.5	novel	0.00	0.0	7	0;0	7	n	0.14	1.5	9	1;2	9	n	0.17	27.5	133	10;45	133	y	0.00	0.0	17	0;0	17	n	0.02	0.5	30	0;1	30	n	0.14	10.5	64	8;13	64	n	0.06	1.5	22	0;3	22	n	0.06	4.5	67	2;7	67	n	0.00	0.0	7	0;0	7	n	0.00	0.0	6	0;0	6	n	0.20	0.5	2	0;1	2	n	0.06	0.5	8	1;0	8	n	ENSMUSG00000028028.12	Alpk1	chr3	protein_coding	alpha-kinase 1
novel_NIR_12136	chr3	127478086	127479906	-	127478086;127478963	127478887;127479906	ES	ENSMUST00000198955.5	novel	0.00	0	2.0	0	2;2	n	0.00	0	3.0	0	2;4	n	0.15	8	47.0	8	48;46	y	0.00	0	4.5	0	5;4	n	0.00	0	9.0	0	9;9	n	0.00	0	19.0	0	20;18	n	0.15	1	5.5	1	5;6	n	0.00	0	22.5	0	27;18	n	0.00	0	1.5	0	0;3	n	0.00	0	0.5	0	0;1	n	0.00	0	0.5	0	1;0	n	0.00	0	1.0	0	2;0	n	ENSMUSG00000028028.12	Alpk1	chr3	protein_coding	alpha-kinase 1
novel_NIR_12137	chr3	127489401	127522920	-	127489401;127518178	127518024;127522920	ES	ENSMUST00000198955.5	novel	0.00	0	4.0	0	5;3	n	0.00	0	8.5	0	9;8	n	0.10	9	80.5	9	63;98	n	0.30	3	7.0	3	8;6	y	0.00	0	22.0	0	21;23	n	0.09	5	49.5	5	39;60	n	0.00	0	11.5	0	6;17	n	0.10	3	26.5	3	14;39	n	0.00	0	1.5	0	1;2	n	0.00	0	4.0	0	3;5	n	0.00	0	2.0	0	4;0	n	0.25	1	3.0	1	1;5	n	ENSMUSG00000028028.12	Alpk1	chr3	protein_coding	alpha-kinase 1
novel_NIR_12138	chr3	127489401	127522920	-	127518178	127522920	3pMXE	ENSMUST00000161239.2	novel	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.08	9	98	9	98	n	0.33	3	6	3	6	y	0.00	0	23	0	23	n	0.08	5	60	5	60	n	0.00	0	17	0	17	n	0.07	3	39	3	39	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.17	1	5	1	5	n	ENSMUSG00000028028.12	Alpk1	chr3	protein_coding	alpha-kinase 1
novel_NIR_12139	chr3	127573923	127576231	-	127573923	127574103	5pMXE	ENSMUST00000162859.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028028.12	Alpk1	chr3	protein_coding	alpha-kinase 1
novel_NIR_12140	chr3	127583186	127585122	+	127583820	127585122	5pMXE	ENSMUST00000054483.14	novel	0.30	10	23	10	23	y	0.38	12	20	12	20	y	0.62	611	376	611	376	y	0.18	6	27	6	27	y	0.56	60	47	60	47	y	0.64	221	126	221	126	y	0.54	61	53	61	53	y	0.69	176	80	176	80	y	0.36	9	16	9	16	y	0.20	2	8	2	8	y	0.00	0	6	0	6	n	0.52	16	15	16	15	y	ENSMUSG00000046688.15	Tifa	chr3	protein_coding	TRAF-interacting protein with forkhead-associated domain
novel_NIR_12141	chr3	127583186	127585122	+	127584398	127585122	5pMXE	ENSMUST00000164447.3	novel	0.91	10	1	10	1	y	1.00	12	0	12	0	y	1.00	611	2	611	2	y	0.67	6	3	6	3	y	0.87	60	9	60	9	y	0.99	221	3	221	3	y	0.90	61	7	61	7	y	0.99	176	1	176	1	y	0.90	9	1	9	1	y	0.67	2	1	2	1	y	0.00	0	5	0	5	n	0.94	16	1	16	1	y	ENSMUSG00000046688.15	Tifa	chr3	protein_coding	TRAF-interacting protein with forkhead-associated domain
novel_NIR_12142	chr3	127583820	127584690	+	127583820	127590218	A3SS	ENSMUST00000163775.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	20	0	20	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000046688.15	Tifa	chr3	protein_coding	TRAF-interacting protein with forkhead-associated domain
novel_NIR_12143	chr3	127583820	127584690	+	127583820	127613073	A3SS	ENSMUST00000166778.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	20	0	20	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000046688.15	Tifa	chr3	protein_coding	TRAF-interacting protein with forkhead-associated domain
novel_NIR_12144	chr3	127583820	127584711	+	127583820	127590218	A3SS	ENSMUST00000163775.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	9	0	9	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000046688.15	Tifa	chr3	protein_coding	TRAF-interacting protein with forkhead-associated domain
novel_NIR_12145	chr3	127583820	127584711	+	127583820	127613073	A3SS	ENSMUST00000166778.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	9	0	9	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000046688.15	Tifa	chr3	protein_coding	TRAF-interacting protein with forkhead-associated domain
novel_NIR_12146	chr3	127583820;127584833	127584690;127585122	+	127583820	127585122	cassetteExon	ENSMUST00000054483.14	novel	0.04	1.0	23	0;2	23	n	0.02	0.5	20	0;1	20	n	0.19	87.0	376	20;154	376	y	0.07	2.0	27	0;4	27	n	0.10	5.0	47	1;9	47	n	0.08	11.0	126	1;21	126	n	0.01	0.5	53	0;1	53	n	0.12	10.5	80	4;17	80	n	0.00	0.0	16	0;0	16	n	0.30	3.5	8	0;7	8	n	0.25	2.0	6	0;4	6	n	0.12	2.0	15	0;4	15	n	ENSMUSG00000046688.15	Tifa	chr3	protein_coding	TRAF-interacting protein with forkhead-associated domain
novel_NIR_12147	chr3	127583820;127584833	127584711;127585122	+	127583820	127585122	cassetteExon	ENSMUST00000054483.14	novel	0.04	1.0	23	0;2	23	n	0.02	0.5	20	0;1	20	n	0.18	81.5	376	9;154	376	y	0.07	2.0	27	0;4	27	n	0.09	4.5	47	0;9	47	n	0.08	10.5	126	0;21	126	n	0.01	0.5	53	0;1	53	n	0.10	9.0	80	1;17	80	n	0.00	0.0	16	0;0	16	n	0.30	3.5	8	0;7	8	n	0.25	2.0	6	0;4	6	n	0.12	2.0	15	0;4	15	n	ENSMUSG00000046688.15	Tifa	chr3	protein_coding	TRAF-interacting protein with forkhead-associated domain
novel_NIR_12148	chr3	127584833	127585122	+	127583820	127585122	A5SS	ENSMUST00000054483.14	novel	0.08	2	23	2	23	n	0.05	1	20	1	20	n	0.29	154	376	154	376	n	0.13	4	27	4	27	n	0.16	9	47	9	47	n	0.14	21	126	21	126	n	0.02	1	53	1	53	n	0.18	17	80	17	80	n	0.00	0	16	0	16	n	0.47	7	8	7	8	y	0.40	4	6	4	6	y	0.21	4	15	4	15	y	ENSMUSG00000046688.15	Tifa	chr3	protein_coding	TRAF-interacting protein with forkhead-associated domain
novel_NIR_12149	chr3	127584833	127585122	+	127584398	127585122	A5SS	ENSMUST00000164447.3	novel	0.67	2	1	2	1	y	1.00	1	0	1	0	n	0.99	154	2	154	2	y	0.57	4	3	4	3	y	0.50	9	9	9	9	y	0.88	21	3	21	3	y	0.12	1	7	1	7	n	0.94	17	1	17	1	y	0.00	0	1	0	1	n	0.88	7	1	7	1	y	0.44	4	5	4	5	y	0.80	4	1	4	1	y	ENSMUSG00000046688.15	Tifa	chr3	protein_coding	TRAF-interacting protein with forkhead-associated domain
novel_NIR_12150	chr3	127609339	127610559	-	127606944	127610559	A3SS	ENSMUST00000200409.5	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.29	2	5	2	5	y	0.00	0	4	0	4	n	0.11	1	8	1	8	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	ENSMUSG00000074238.7	Ap1ar	chr3	protein_coding	adaptor-related protein complex 1 associated regulatory protein
novel_NIR_12151	chr3	127616962	127626713	-	127616962	127628513	A5SS	ENSMUST00000196392.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000074238.7	Ap1ar	chr3	protein_coding	adaptor-related protein complex 1 associated regulatory protein
novel_NIR_12152	chr3	127616962;127629828	127629785;127630798	-	127616962;127628543	127628513;127630798	MXE	ENSMUST00000196392.2	novel	-	-	-	-	-	-	0.00	0.0	0.5	0;0	0;1	n	0.71	2.5	1.0	2;3	2;0	y	0.00	0.0	4.5	0;0	5;4	n	0.33	0.5	1.0	0;1	2;0	n	0.00	0.0	1.0	0;0	1;1	n	1.00	1.5	0.0	0;3	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0.0	2.5	0;0	3;2	n	0.00	0.0	1.5	0;0	1;2	n	1.00	2.0	0.0	0;4	0;0	n	ENSMUSG00000074238.7	Ap1ar	chr3	protein_coding	adaptor-related protein complex 1 associated regulatory protein
novel_NIR_12153	chr3	127626817	127628513	-	127616962	127628513	A3SS	ENSMUST00000196392.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000074238.7	Ap1ar	chr3	protein_coding	adaptor-related protein complex 1 associated regulatory protein
novel_NIR_12154	chr3	127628543;127629828	127629785;127630798	-	127628543	127630798	cassetteExon	ENSMUST00000196392.2	novel	-	-	-	-	-	-	0.00	0.0	1	0;0	1	n	1.00	2.5	0	2;3	0	y	0.00	0.0	4	0;0	4	n	1.00	1.5	0	2;1	0	n	0.00	0.0	1	0;0	1	n	1.00	3.5	0	4;3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0.0	2	0;0	2	n	0.00	0.0	2	0;0	2	n	1.00	2.5	0	1;4	0	n	ENSMUSG00000074238.7	Ap1ar	chr3	protein_coding	adaptor-related protein complex 1 associated regulatory protein
novel_NIR_12155	chr3	129324813	129325671	-	129324813	129325558	A5SS	ENSMUST00000197370.5	novel	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.29	2	5	2	5	y	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	26	0	26	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	ENSMUSG00000105837.5	Gm35986	chr3	lncRNA	predicted gene, 35986
novel_NIR_12156	chr3	129324813	129325671	-	129324813	129325906	A5SS	ENSMUST00000200419.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000105837.5	Gm35986	chr3	lncRNA	predicted gene, 35986
novel_NIR_12157	chr3	129684082	129687344	+	129684082	129687308	A3SS	ENSMUST00000196838.5	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	5	0	5	n	0.50	2	2	2	2	y	0.00	0	7	0	7	n	0.00	0	8	0	8	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	3	0	3	n	ENSMUSG00000027999.16	Pla2g12a	chr3	protein_coding	phospholipase A2, group XIIA
novel_NIR_12158	chr3	129684082	129688418	+	129684082	129687308	A3SS&ES	ENSMUST00000196838.5	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.67	6	3	6	3	y	-	-	-	-	-	-	0.50	5	5	5	5	y	0.80	8	2	8	2	y	0.30	3	7	3	7	y	0.38	5	8	5	8	y	-	-	-	-	-	-	1.00	2	0	2	0	y	0.18	2	9	2	9	y	0.50	3	3	3	3	y	ENSMUSG00000027999.16	Pla2g12a	chr3	protein_coding	phospholipase A2, group XIIA
novel_NIR_12159	chr3	129849319	129854218	-	129835096	129854218	A3SS	ENSMUST00000001079.15	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	15	0	15	n	0.00	0	21	0	21	n	0.22	2	7	2	7	y	0.00	0	17	0	17	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	ENSMUSG00000001052.16	Sec24b	chr3	protein_coding	Sec24 related gene family, member B (S. cerevisiae)
novel_NIR_12160	chr3	130342892	130345609	+	130342892;130343730	130343686;130345609	ES	ENSMUST00000080335.11	novel	-	-	-	-	-	-	0.40	1	1.5	1	1;2	n	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1.0	0	2;0	n	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	0.80	2	0.5	2	0;1	y	ENSMUSG00000058897.19	Col25a1	chr3	protein_coding	collagen, type XXV, alpha 1
novel_NIR_12161	chr3	130522951	130523152	-	130522951	130523838	A5SS	ENSMUST00000196202.5	novel	0.50	3	3	3	3	y	0.40	4	6	4	6	y	0.33	4	8	4	8	y	0.00	0	4	0	4	n	0.57	8	6	8	6	y	0.00	0	3	0	3	n	0.67	6	3	6	3	y	0.00	0	1	0	1	n	0.38	3	5	3	5	y	1.00	4	0	4	0	y	0.62	8	5	8	5	y	0.50	2	2	2	2	y	ENSMUSG00000062006.13	Rpl34	chr3	protein_coding	ribosomal protein L34
novel_NIR_12162	chr3	130522951	130523177	-	130522951	130523770	A5SS	ENSMUST00000062601.14	novel	0.19	14	59	14	59	y	0.06	3	51	3	51	n	0.03	2	65	2	65	n	0.14	9	54	9	54	n	0.08	7	84	7	84	n	0.08	3	33	3	33	n	0.14	8	51	8	51	n	0.12	3	21	3	21	n	0.08	4	49	4	49	n	0.07	5	63	5	63	n	0.15	13	71	13	71	y	0.09	8	85	8	85	n	ENSMUSG00000062006.13	Rpl34	chr3	protein_coding	ribosomal protein L34
novel_NIR_12163	chr3	130522951	130523177	-	130522951	130523838	A5SS	ENSMUST00000196202.5	novel	0.82	14	3	14	3	y	0.33	3	6	3	6	y	0.20	2	8	2	8	y	0.69	9	4	9	4	y	0.54	7	6	7	6	y	0.50	3	3	3	3	y	0.73	8	3	8	3	y	0.75	3	1	3	1	y	0.44	4	5	4	5	y	1.00	5	0	5	0	y	0.72	13	5	13	5	y	0.80	8	2	8	2	y	ENSMUSG00000062006.13	Rpl34	chr3	protein_coding	ribosomal protein L34
novel_NIR_12164	chr3	131136109	131137080	-	131136109	131137084	A5SS	ENSMUST00000126569.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000050931.8	Sgms2	chr3	protein_coding	sphingomyelin synthase 2
novel_NIR_12165	chr3	131136109	131137080	-	131136109	131138239	A5SS	ENSMUST00000090246.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000050931.8	Sgms2	chr3	protein_coding	sphingomyelin synthase 2
novel_NIR_12166	chr3	131136109	131137080	-	131136109	131196169	A5SS	ENSMUST00000197057.2	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.20	2	8	2	8	y	0.00	0	4	0	4	n	0.00	0	9	0	9	n	ENSMUSG00000050931.8	Sgms2	chr3	protein_coding	sphingomyelin synthase 2
novel_NIR_12167	chr3	131136109	131137080	-	131136109	131196891	A5SS	ENSMUST00000200431.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000050931.8	Sgms2	chr3	protein_coding	sphingomyelin synthase 2
novel_NIR_12168	chr3	131136109	131194739	-	131136109	131138239	5pMXE	ENSMUST00000090246.5	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000050931.8	Sgms2	chr3	protein_coding	sphingomyelin synthase 2
novel_NIR_12169	chr3	131136109	131194739	-	131136109	131196169	A5SS	ENSMUST00000197057.2	novel	0.14	1	6	1	6	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.14	1	6	1	6	n	0.20	2	8	2	8	y	0.33	1	2	1	2	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.27	3	8	3	8	y	0.43	3	4	3	4	y	0.00	0	9	0	9	n	ENSMUSG00000050931.8	Sgms2	chr3	protein_coding	sphingomyelin synthase 2
novel_NIR_12170	chr3	131136109	131194739	-	131136109	131196891	A5SS	ENSMUST00000200431.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	3	3	3	3	y	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000050931.8	Sgms2	chr3	protein_coding	sphingomyelin synthase 2
novel_NIR_12171	chr3	131136109	131195421	-	131136109	131138239	5pMXE	ENSMUST00000090246.5	novel	1.00	6	0	6	0	y	1.00	6	0	6	0	y	1.00	3	0	3	0	y	1.00	11	0	11	0	y	1.00	7	0	7	0	y	1.00	2	0	2	0	y	1.00	10	0	10	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	11	0	11	0	y	1.00	3	0	3	0	y	1.00	7	0	7	0	y	ENSMUSG00000050931.8	Sgms2	chr3	protein_coding	sphingomyelin synthase 2
novel_NIR_12172	chr3	131136109	131195421	-	131136109	131196169	A5SS	ENSMUST00000197057.2	novel	0.50	6	6	6	6	y	0.75	6	2	6	2	y	0.25	3	9	3	9	y	0.65	11	6	11	6	y	0.47	7	8	7	8	y	0.50	2	2	2	2	y	0.71	10	4	10	4	y	0.50	2	2	2	2	y	0.40	2	3	2	3	y	0.58	11	8	11	8	y	0.43	3	4	3	4	y	0.44	7	9	7	9	y	ENSMUSG00000050931.8	Sgms2	chr3	protein_coding	sphingomyelin synthase 2
novel_NIR_12173	chr3	131136109	131195421	-	131136109	131196891	A5SS	ENSMUST00000200431.2	novel	1.00	6	0	6	0	y	1.00	6	0	6	0	y	1.00	3	0	3	0	y	0.92	11	1	11	1	y	1.00	7	0	7	0	y	1.00	2	0	2	0	y	0.91	10	1	10	1	y	0.67	2	1	2	1	y	0.67	2	1	2	1	y	0.79	11	3	11	3	y	1.00	3	0	3	0	y	1.00	7	0	7	0	y	ENSMUSG00000050931.8	Sgms2	chr3	protein_coding	sphingomyelin synthase 2
novel_NIR_12174	chr3	131136109	131195851	-	131136109	131138239	5pMXE	ENSMUST00000090246.5	novel	1.00	7	0	7	0	y	1.00	5	0	5	0	y	1.00	16	0	16	0	y	1.00	16	0	16	0	y	1.00	31	0	31	0	y	1.00	6	0	6	0	y	1.00	20	0	20	0	y	1.00	12	0	12	0	y	1.00	17	0	17	0	y	1.00	31	0	31	0	y	1.00	20	0	20	0	y	1.00	24	0	24	0	y	ENSMUSG00000050931.8	Sgms2	chr3	protein_coding	sphingomyelin synthase 2
novel_NIR_12175	chr3	131136109	131195851	-	131136109	131196169	A5SS	ENSMUST00000197057.2	novel	0.54	7	6	7	6	y	0.71	5	2	5	2	y	0.64	16	9	16	9	y	0.73	16	6	16	6	y	0.79	31	8	31	8	y	0.75	6	2	6	2	y	0.83	20	4	20	4	y	0.86	12	2	12	2	y	0.85	17	3	17	3	y	0.79	31	8	31	8	y	0.83	20	4	20	4	y	0.73	24	9	24	9	y	ENSMUSG00000050931.8	Sgms2	chr3	protein_coding	sphingomyelin synthase 2
novel_NIR_12176	chr3	131136109	131195851	-	131136109	131196891	A5SS	ENSMUST00000200431.2	novel	1.00	7	0	7	0	y	1.00	5	0	5	0	y	1.00	16	0	16	0	y	0.94	16	1	16	1	y	1.00	31	0	31	0	y	1.00	6	0	6	0	y	0.95	20	1	20	1	y	0.92	12	1	12	1	y	0.94	17	1	17	1	y	0.91	31	3	31	3	y	1.00	20	0	20	0	y	1.00	24	0	24	0	y	ENSMUSG00000050931.8	Sgms2	chr3	protein_coding	sphingomyelin synthase 2
novel_NIR_12177	chr3	133028377	133045024	+	133044812	133045024	5pMXE	ENSMUST00000150386.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028013.17	Ppa2	chr3	protein_coding	pyrophosphatase (inorganic) 2
novel_NIR_12178	chr3	133032462	133045024	+	133044812	133045024	5pMXE	ENSMUST00000150386.8	novel	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000028013.17	Ppa2	chr3	protein_coding	pyrophosphatase (inorganic) 2
novel_NIR_12179	chr3	133182393	133185103	-	133182396	133185103	A3SS	ENSMUST00000196398.5	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	8	0	8	0	y	ENSMUSG00000040943.13	Tet2	chr3	protein_coding	tet methylcytosine dioxygenase 2
novel_NIR_12180	chr3	133219934	133249947	-	133219934	133249961	A5SS	ENSMUST00000098603.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.29	2	5	2	5	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	6	0	6	n	ENSMUSG00000040943.13	Tet2	chr3	protein_coding	tet methylcytosine dioxygenase 2
novel_NIR_12181	chr3	133219934	133249947	-	133219934	133250806	A5SS	ENSMUST00000197118.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040943.13	Tet2	chr3	protein_coding	tet methylcytosine dioxygenase 2
novel_NIR_12182	chr3	133946476	133946593	+	133946476	133963814	A3SS	ENSMUST00000181904.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000044365.16	Cxxc4	chr3	protein_coding	CXXC finger 4
novel_NIR_12183	chr3	135116986	135128260	-	135126678	135128260	3pMXE	ENSMUST00000198784.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028165.10	Cisd2	chr3	protein_coding	CDGSH iron sulfur domain 2
novel_NIR_12184	chr3	135142363	135144302	-	135142363	135144182	A5SS	ENSMUST00000182865.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000097032.3	4930539J05Rik	chr3	lncRNA	RIKEN cDNA 4930539J05 gene
novel_NIR_12185	chr3	135144541	135145405	+	135143945	135145405	A5SS	ENSMUST00000196446.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000078578.10	Ube2d3	chr3	protein_coding	ubiquitin-conjugating enzyme E2D 3
novel_NIR_12186	chr3	135144541	135145405	+	135144193	135145405	A5SS	ENSMUST00000199613.5	novel	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.25	3	9	3	9	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	ENSMUSG00000078578.10	Ube2d3	chr3	protein_coding	ubiquitin-conjugating enzyme E2D 3
novel_NIR_12187	chr3	135144541	135145405	+	135144323	135145405	A5SS	ENSMUST00000196591.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.60	3	2	3	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000078578.10	Ube2d3	chr3	protein_coding	ubiquitin-conjugating enzyme E2D 3
novel_NIR_12188	chr3	135144541	135145405	+	135144631	135145405	A5SS	ENSMUST00000199582.5	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.30	3	7	3	7	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	ENSMUSG00000078578.10	Ube2d3	chr3	protein_coding	ubiquitin-conjugating enzyme E2D 3
novel_NIR_12189	chr3	135144635	135145405	+	135143945	135145405	A5SS	ENSMUST00000196446.5	novel	1.00	2	0	2	0	y	1.00	7	0	7	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	ENSMUSG00000078578.10	Ube2d3	chr3	protein_coding	ubiquitin-conjugating enzyme E2D 3
novel_NIR_12190	chr3	135144635	135145405	+	135144113	135145405	A5SS	ENSMUST00000106291.10	novel	0.07	2	28	2	28	n	0.23	7	24	7	24	y	0.04	3	73	3	73	n	0.00	0	53	0	53	n	0.02	1	41	1	41	n	0.00	0	18	0	18	n	0.00	0	25	0	25	n	0.00	0	22	0	22	n	0.03	1	33	1	33	n	0.00	0	37	0	37	n	0.07	2	27	2	27	n	0.07	3	38	3	38	n	ENSMUSG00000078578.10	Ube2d3	chr3	protein_coding	ubiquitin-conjugating enzyme E2D 3
novel_NIR_12191	chr3	135144635	135145405	+	135144193	135145405	A5SS	ENSMUST00000199613.5	novel	0.22	2	7	2	7	y	0.78	7	2	7	2	y	0.27	3	8	3	8	y	0.00	0	9	0	9	n	0.10	1	9	1	9	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.12	1	7	1	7	n	0.00	0	5	0	5	n	0.40	2	3	2	3	y	0.33	3	6	3	6	y	ENSMUSG00000078578.10	Ube2d3	chr3	protein_coding	ubiquitin-conjugating enzyme E2D 3
novel_NIR_12192	chr3	135144635	135145405	+	135144323	135145405	A5SS	ENSMUST00000196591.5	novel	1.00	2	0	2	0	y	1.00	7	0	7	0	y	0.60	3	2	3	2	y	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.14	1	6	1	6	n	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.75	3	1	3	1	y	ENSMUSG00000078578.10	Ube2d3	chr3	protein_coding	ubiquitin-conjugating enzyme E2D 3
novel_NIR_12193	chr3	135144635	135145405	+	135144631	135145405	A5SS	ENSMUST00000199582.5	novel	0.40	2	3	2	3	y	0.88	7	1	7	1	y	0.30	3	7	3	7	y	0.00	0	7	0	7	n	0.12	1	7	1	7	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.29	2	5	2	5	y	0.60	3	2	3	2	y	ENSMUSG00000078578.10	Ube2d3	chr3	protein_coding	ubiquitin-conjugating enzyme E2D 3
novel_NIR_12194	chr3	135144903	135145405	+	135143945	135145405	A5SS	ENSMUST00000196446.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000078578.10	Ube2d3	chr3	protein_coding	ubiquitin-conjugating enzyme E2D 3
novel_NIR_12195	chr3	135144903	135145405	+	135144193	135145405	A5SS	ENSMUST00000199613.5	novel	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.11	1	8	1	8	n	0.25	3	9	3	9	y	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	ENSMUSG00000078578.10	Ube2d3	chr3	protein_coding	ubiquitin-conjugating enzyme E2D 3
novel_NIR_12196	chr3	135144903	135145405	+	135144323	135145405	A5SS	ENSMUST00000196591.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	0.50	3	3	3	3	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000078578.10	Ube2d3	chr3	protein_coding	ubiquitin-conjugating enzyme E2D 3
novel_NIR_12197	chr3	135144903	135145405	+	135144631	135145405	A5SS	ENSMUST00000199582.5	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.12	1	7	1	7	n	0.30	3	7	3	7	y	0.00	0	7	0	7	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	ENSMUSG00000078578.10	Ube2d3	chr3	protein_coding	ubiquitin-conjugating enzyme E2D 3
novel_NIR_12198	chr3	135168804	135170937	+	135168804	135169482	A3SS&ES	ENSMUST00000197134.3	novel	0.50	1	1	1	1	n	0.75	3	1	3	1	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.02	1	43	1	43	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.33	1	2	1	2	n	ENSMUSG00000078578.10	Ube2d3	chr3	protein_coding	ubiquitin-conjugating enzyme E2D 3
novel_NIR_12199	chr3	135218208	135219715	+	135218208	135223664	A3SS	ENSMUST00000131610.8	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028164.16	Manba	chr3	protein_coding	mannosidase, beta A, lysosomal
novel_NIR_12200	chr3	135269558	135271028	+	135269558	135272249	A3SS	ENSMUST00000153412.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000028164.16	Manba	chr3	protein_coding	mannosidase, beta A, lysosomal
novel_NIR_12201	chr3	135324728	135361261	-	135324728;135332504	135332356;135361261	ES	ENSMUST00000029812.14	novel	0.00	0	15.5	0	11;20	n	0.00	0	13.5	0	15;12	n	0.00	0	30.5	0	35;26	n	0.00	0	32.0	0	38;26	n	0.00	0	33.0	0	37;29	n	0.00	0	15.5	0	20;11	n	0.00	0	23.5	0	31;16	n	0.00	0	18.0	0	21;15	n	0.15	2	11.5	2	10;13	y	0.00	0	26.0	0	27;25	n	0.00	0	18.5	0	19;18	n	0.00	0	27.0	0	29;25	n	ENSMUSG00000028163.18	Nfkb1	chr3	protein_coding	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105
novel_NIR_12202	chr3	135564002	135564569	+	135564002	135589958	A3SS	ENSMUST00000081978.10	novel	0.21	8	30	8	30	y	0.18	6	27	6	27	y	0.07	2	25	2	25	n	0.09	3	31	3	31	n	0.05	3	58	3	58	n	0.06	1	16	1	16	n	0.07	3	41	3	41	n	0.04	1	26	1	26	n	0.22	5	18	5	18	y	0.19	10	43	10	43	y	0.12	3	23	3	23	n	0.20	11	45	11	45	y	ENSMUSG00000053897.16	Slc39a8	chr3	protein_coding	solute carrier family 39 (metal ion transporter), member 8
novel_NIR_12203	chr3	137610615	137614106	+	137610615;137611818	137611646;137614106	ES	ENSMUST00000090178.10	novel	0.04	1	24.5	1	19;30	n	0.00	0	33.0	0	25;41	n	0.00	0	38.0	0	43;33	n	0.15	5	28.5	5	33;24	y	0.03	1	38.5	1	34;43	n	0.00	0	22.5	0	25;20	n	0.00	0	47.5	0	46;49	n	0.06	2	33.0	2	45;21	n	0.05	1	20.0	1	25;15	n	0.00	0	37.0	0	44;30	n	0.00	0	32.5	0	38;27	n	0.00	0	39.0	0	39;39	n	ENSMUSG00000074212.8	Dnajb14	chr3	protein_coding	DnaJ heat shock protein family (Hsp40) member B14
novel_NIR_12204	chr3	137624410	137624634	+	137624388	137624634	A5SS	ENSMUST00000197064.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.80	4	1	4	1	y	1.00	2	0	2	0	y	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000091512.6	Lamtor3	chr3	protein_coding	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3
novel_NIR_12205	chr3	137839899	137844663	-	137839896	137844663	A3SS	ENSMUST00000098580.6	novel	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.00	0	16	0	16	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.15	2	11	2	11	y	0.00	0	8	0	8	n	0.00	0	12	0	12	n	ENSMUSG00000028158.15	Mttp	chr3	protein_coding	microsomal triglyceride transfer protein
novel_NIR_12206	chr3	137844757	137848664	-	137844757	137848933	A5SS	ENSMUST00000098580.6	novel	0.00	0	5	0	5	n	0.57	4	3	4	3	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.44	4	5	4	5	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.33	1	2	1	2	n	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	ENSMUSG00000028158.15	Mttp	chr3	protein_coding	microsomal triglyceride transfer protein
novel_NIR_12207	chr3	137844757;137848703	137848664;137848933	-	137844757	137848933	cassetteExon	ENSMUST00000098580.6	novel	0.00	0.0	5	0;0	5	n	0.60	4.5	3	4;5	3	y	0.00	0.0	7	0;0	7	n	0.00	0.0	6	0;0	6	n	0.29	2.0	5	4;0	5	n	0.00	0.0	3	0;0	3	n	0.00	0.0	6	0;0	6	n	0.00	0.0	6	0;0	6	n	0.20	0.5	2	1;0	2	n	0.00	0.0	14	0;0	14	n	0.00	0.0	5	0;0	5	n	0.00	0.0	12	0;0	12	n	ENSMUSG00000028158.15	Mttp	chr3	protein_coding	microsomal triglyceride transfer protein
novel_NIR_12208	chr3	137917013;137922884	137922644;137943362	-	137917013	137943362	cassetteExon	ENSMUST00000185122.8	novel	0.19	5.0	21	3;7	21	y	0.12	3.5	26	0;7	26	n	0.00	0.0	7	0;0	7	n	0.05	2.0	39	0;4	39	n	0.22	7.5	26	6;9	26	y	0.08	0.5	6	0;1	6	n	0.18	6.5	30	0;13	30	n	0.00	0.0	8	0;0	8	n	0.18	4.0	18	2;6	18	y	0.12	7.5	55	3;12	55	n	0.14	3.5	22	2;5	22	n	0.00	0.0	22	0;0	22	n	ENSMUSG00000099146.8	0610031O16Rik	chr3	lncRNA	RIKEN cDNA 0610031O16 gene
novel_NIR_12209	chr3	137922884	137943362	-	137899584	137943362	A3SS	ENSMUST00000199804.3	novel	1.00	7	0	7	0	y	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	9	0	9	0	y	1.00	1	0	1	0	n	1.00	13	0	13	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	0.92	12	1	12	1	y	1.00	5	0	5	0	y	-	-	-	-	-	-	ENSMUSG00000012042.10	4930579F01Rik	chr3	protein_coding	RIKEN cDNA 4930579F01 gene
novel_NIR_12210	chr3	137922884	137943362	-	137917013	137943362	A3SS	ENSMUST00000185122.8	novel	0.25	7	21	7	21	n	0.21	7	26	7	26	y	0.00	0	7	0	7	n	0.09	4	39	4	39	n	0.26	9	26	9	26	n	0.14	1	6	1	6	n	0.30	13	30	13	30	y	0.00	0	8	0	8	n	0.25	6	18	6	18	n	0.18	12	55	12	55	n	0.19	5	22	5	22	n	0.00	0	22	0	22	n	ENSMUSG00000099146.8	0610031O16Rik	chr3	lncRNA	RIKEN cDNA 0610031O16 gene
novel_NIR_12211	chr3	137922884	137943362	-	137923661	137943362	3pMXE	ENSMUST00000183783.8	novel	0.64	7	4	7	4	y	0.35	7	13	7	13	y	-	-	-	-	-	-	0.27	4	11	4	11	y	0.56	9	7	9	7	y	1.00	1	0	1	0	n	0.45	13	16	13	16	y	0.00	0	2	0	2	n	0.29	6	15	6	15	y	0.35	12	22	12	22	y	0.22	5	18	5	18	y	0.00	0	14	0	14	n	ENSMUSG00000099146.8	0610031O16Rik	chr3	lncRNA	RIKEN cDNA 0610031O16 gene
novel_NIR_12212	chr3	137922884	137943362	-	137932713	137943362	3pMXE	ENSMUST00000184166.8	novel	0.33	7	14	7	14	y	0.27	7	19	7	19	y	0.00	0	3	0	3	n	0.20	4	16	4	16	y	0.30	9	21	9	21	y	0.33	1	2	1	2	n	0.62	13	8	13	8	y	0.00	0	3	0	3	n	0.22	6	21	6	21	y	0.40	12	18	12	18	y	0.13	5	33	5	33	n	0.00	0	33	0	33	n	ENSMUSG00000099146.8	0610031O16Rik	chr3	lncRNA	RIKEN cDNA 0610031O16 gene
novel_NIR_12213	chr3	137922884	137943362	-	137935711	137943362	3pMXE	ENSMUST00000185046.2	novel	0.12	7	50	7	50	n	0.11	7	54	7	54	n	0.00	0	8	0	8	n	0.06	4	59	4	59	n	0.13	9	58	9	58	n	0.12	1	7	1	7	n	0.22	13	47	13	47	y	0.00	0	25	0	25	n	0.07	6	75	6	75	n	0.11	12	93	12	93	n	0.06	5	73	5	73	n	0.00	0	98	0	98	n	ENSMUSG00000099146.8	0610031O16Rik	chr3	lncRNA	RIKEN cDNA 0610031O16 gene
novel_NIR_12214	chr3	137927073	137943362	-	137899584	137943362	A3SS	ENSMUST00000199804.3	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000012042.10	4930579F01Rik	chr3	protein_coding	RIKEN cDNA 4930579F01 gene
novel_NIR_12215	chr3	137927073	137943362	-	137923661	137943362	A3SS	ENSMUST00000183783.8	novel	0.00	0	4	0	4	n	0.19	3	13	3	13	y	-	-	-	-	-	-	0.21	3	11	3	11	y	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	16	0	16	n	0.00	0	2	0	2	n	0.00	0	15	0	15	n	0.00	0	22	0	22	n	0.00	0	18	0	18	n	0.00	0	14	0	14	n	ENSMUSG00000099146.8	0610031O16Rik	chr3	lncRNA	RIKEN cDNA 0610031O16 gene
novel_NIR_12216	chr3	137927073	137943362	-	137932713	137943362	3pMXE	ENSMUST00000184166.8	novel	0.00	0	14	0	14	n	0.14	3	19	3	19	n	0.00	0	3	0	3	n	0.16	3	16	3	16	y	0.00	0	21	0	21	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	21	0	21	n	0.00	0	18	0	18	n	0.00	0	33	0	33	n	0.00	0	33	0	33	n	ENSMUSG00000099146.8	0610031O16Rik	chr3	lncRNA	RIKEN cDNA 0610031O16 gene
novel_NIR_12217	chr3	137927168	137927474	+	137923669	137927474	A5SS	ENSMUST00000090171.7	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000055301.9	Adh7	chr3	protein_coding	alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide
novel_NIR_12218	chr3	137927263	137927474	+	137923669	137927474	A5SS	ENSMUST00000090171.7	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000055301.9	Adh7	chr3	protein_coding	alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide
novel_NIR_12219	chr3	137927350	137943362	-	137899584	137943362	A3SS	ENSMUST00000199804.3	novel	1.00	34	0	34	0	y	1.00	18	0	18	0	y	1.00	1	0	1	0	n	1.00	34	0	34	0	y	1.00	30	0	30	0	y	1.00	5	0	5	0	y	1.00	23	0	23	0	y	1.00	6	0	6	0	y	1.00	25	0	25	0	y	0.98	54	1	54	1	y	1.00	18	0	18	0	y	1.00	41	0	41	0	y	ENSMUSG00000012042.10	4930579F01Rik	chr3	protein_coding	RIKEN cDNA 4930579F01 gene
novel_NIR_12220	chr3	137927350	137943362	-	137917013	137943362	A3SS	ENSMUST00000185122.8	novel	0.62	34	21	34	21	y	0.41	18	26	18	26	n	0.12	1	7	1	7	n	0.47	34	39	34	39	y	0.54	30	26	30	26	y	0.45	5	6	5	6	y	0.43	23	30	23	30	y	0.43	6	8	6	8	y	0.58	25	18	25	18	y	0.50	54	55	54	55	y	0.45	18	22	18	22	y	0.65	41	22	41	22	y	ENSMUSG00000099146.8	0610031O16Rik	chr3	lncRNA	RIKEN cDNA 0610031O16 gene
novel_NIR_12221	chr3	137927350	137943362	-	137923661	137943362	A3SS	ENSMUST00000183783.8	novel	0.89	34	4	34	4	y	0.58	18	13	18	13	y	1.00	1	0	1	0	n	0.76	34	11	34	11	y	0.81	30	7	30	7	y	1.00	5	0	5	0	y	0.59	23	16	23	16	y	0.75	6	2	6	2	y	0.62	25	15	25	15	y	0.71	54	22	54	22	y	0.50	18	18	18	18	y	0.75	41	14	41	14	y	ENSMUSG00000099146.8	0610031O16Rik	chr3	lncRNA	RIKEN cDNA 0610031O16 gene
novel_NIR_12222	chr3	137927350	137943362	-	137932713	137943362	3pMXE	ENSMUST00000184166.8	novel	0.71	34	14	34	14	y	0.49	18	19	18	19	y	0.25	1	3	1	3	n	0.68	34	16	34	16	y	0.59	30	21	30	21	y	0.71	5	2	5	2	y	0.74	23	8	23	8	y	0.67	6	3	6	3	y	0.54	25	21	25	21	y	0.75	54	18	54	18	y	0.35	18	33	18	33	y	0.55	41	33	41	33	y	ENSMUSG00000099146.8	0610031O16Rik	chr3	lncRNA	RIKEN cDNA 0610031O16 gene
novel_NIR_12223	chr3	137927350	137943362	-	137935711	137943362	3pMXE	ENSMUST00000185046.2	novel	0.40	34	50	34	50	y	0.25	18	54	18	54	y	0.11	1	8	1	8	n	0.37	34	59	34	59	y	0.34	30	58	30	58	y	0.42	5	7	5	7	y	0.33	23	47	23	47	y	0.19	6	25	6	25	y	0.25	25	75	25	75	y	0.37	54	93	54	93	y	0.20	18	73	18	73	y	0.29	41	98	41	98	y	ENSMUSG00000099146.8	0610031O16Rik	chr3	lncRNA	RIKEN cDNA 0610031O16 gene
novel_NIR_12224	chr3	137931834	137931952	+	137929889	137931952	A5SS	ENSMUST00000090171.7	novel	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.22	2	7	2	7	y	0.00	0	7	0	7	n	0.11	1	8	1	8	n	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.17	1	5	1	5	n	0.20	1	4	1	4	n	0.14	1	6	1	6	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	ENSMUSG00000055301.9	Adh7	chr3	protein_coding	alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide
novel_NIR_12225	chr3	137933188	137933670	+	137932212	137933670	A5SS	ENSMUST00000090171.7	novel	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	16	0	16	n	0.29	2	5	2	5	y	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.00	0	20	0	20	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	ENSMUSG00000055301.9	Adh7	chr3	protein_coding	alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide
novel_NIR_12226	chr3	137933256	137933670	+	137932212	137933670	A5SS	ENSMUST00000090171.7	novel	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	16	0	16	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.00	0	20	0	20	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.20	2	8	2	8	y	ENSMUSG00000055301.9	Adh7	chr3	protein_coding	alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide
novel_NIR_12227	chr3	137942358	137943362	-	137899584	137943362	A3SS	ENSMUST00000199804.3	novel	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	8	0	8	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	7	0	7	0	y	0.75	3	1	3	1	y	1.00	4	0	4	0	y	1.00	12	0	12	0	y	ENSMUSG00000012042.10	4930579F01Rik	chr3	protein_coding	RIKEN cDNA 4930579F01 gene
novel_NIR_12228	chr3	137942358	137943362	-	137917013	137943362	A3SS	ENSMUST00000185122.8	novel	0.09	2	21	2	21	n	0.10	3	26	3	26	n	0.00	0	7	0	7	n	0.07	3	39	3	39	n	0.24	8	26	8	26	y	0.00	0	6	0	6	n	0.00	0	30	0	30	n	0.00	0	8	0	8	n	0.28	7	18	7	18	y	0.05	3	55	3	55	n	0.15	4	22	4	22	y	0.35	12	22	12	22	y	ENSMUSG00000099146.8	0610031O16Rik	chr3	lncRNA	RIKEN cDNA 0610031O16 gene
novel_NIR_12229	chr3	137942358	137943362	-	137923661	137943362	A3SS	ENSMUST00000183783.8	novel	0.33	2	4	2	4	y	0.19	3	13	3	13	y	-	-	-	-	-	-	0.21	3	11	3	11	y	0.53	8	7	8	7	y	-	-	-	-	-	-	0.00	0	16	0	16	n	0.00	0	2	0	2	n	0.32	7	15	7	15	y	0.12	3	22	3	22	n	0.18	4	18	4	18	y	0.46	12	14	12	14	y	ENSMUSG00000099146.8	0610031O16Rik	chr3	lncRNA	RIKEN cDNA 0610031O16 gene
novel_NIR_12230	chr3	137942358	137943362	-	137932713	137943362	A3SS	ENSMUST00000184166.8	novel	0.12	2	14	2	14	n	0.14	3	19	3	19	n	0.00	0	3	0	3	n	0.16	3	16	3	16	y	0.28	8	21	8	21	y	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.25	7	21	7	21	y	0.14	3	18	3	18	n	0.11	4	33	4	33	n	0.27	12	33	12	33	y	ENSMUSG00000099146.8	0610031O16Rik	chr3	lncRNA	RIKEN cDNA 0610031O16 gene
novel_NIR_12231	chr3	137945425	137945502	-	137945425	137946093	A5SS	ENSMUST00000185046.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000099146.8	0610031O16Rik	chr3	lncRNA	RIKEN cDNA 0610031O16 gene
novel_NIR_12232	chr3	137983611	137985492	+	137975969	137985492	A5SS	ENSMUST00000162032.8	novel	-	-	-	-	-	-	1.00	13	0	13	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	11	0	11	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	6	0	6	0	y	1.00	15	0	15	0	y	1.00	17	0	17	0	y	-	-	-	-	-	-	ENSMUSG00000074207.11	Adh1	chr3	protein_coding	alcohol dehydrogenase 1 (class I)
novel_NIR_12233	chr3	137984668	137985492	+	137975969	137985492	A5SS	ENSMUST00000162032.8	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	2	0	2	0	y	ENSMUSG00000074207.11	Adh1	chr3	protein_coding	alcohol dehydrogenase 1 (class I)
novel_NIR_12234	chr3	137985000	137985492	+	137975969	137985492	A5SS	ENSMUST00000162032.8	novel	1.00	8	0	8	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	21	0	21	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	ENSMUSG00000074207.11	Adh1	chr3	protein_coding	alcohol dehydrogenase 1 (class I)
novel_NIR_12235	chr3	137985593	137988197	+	137985512	137988197	A5SS	ENSMUST00000159159.2	novel	-	-	-	-	-	-	0.22	2	7	2	7	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.12	2	15	2	15	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	ENSMUSG00000074207.11	Adh1	chr3	protein_coding	alcohol dehydrogenase 1 (class I)
novel_NIR_12236	chr3	137986261	137988197	+	137985512	137988197	A5SS	ENSMUST00000159159.2	novel	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	1.00	99	0	99	0	y	-	-	-	-	-	-	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	ENSMUSG00000074207.11	Adh1	chr3	protein_coding	alcohol dehydrogenase 1 (class I)
novel_NIR_12237	chr3	138083326	138087589	+	138079968	138087589	A5SS	ENSMUST00000171054.6	novel	0.41	29	41	29	41	y	0.45	22	27	22	27	y	0.08	2	24	2	24	n	0.46	45	53	45	53	y	0.19	14	58	14	58	y	0.00	0	42	0	42	n	0.41	41	59	41	59	y	0.01	1	71	1	71	n	0.55	51	42	51	42	n	0.66	75	38	75	38	y	0.71	56	23	56	23	y	0.40	26	39	26	39	y	ENSMUSG00000090306.6	Adh6-ps1	chr3	transcribed_unprocessed_pseudogene	alcohol dehydrogenase 6 (class V), pseudogene 1
novel_NIR_12238	chr3	138088913	138123886	+	138088913	138091595	3pMXE	ENSMUST00000171054.6	novel	0.28	13	33	13	33	y	0.14	5	32	5	32	n	0.12	3	22	3	22	n	0.21	15	55	15	55	y	0.09	5	48	5	48	n	0.00	0	50	0	50	n	0.31	25	56	25	56	y	0.00	0	50	0	50	n	0.24	21	67	21	67	y	0.27	38	105	38	105	y	0.21	18	67	18	67	y	0.29	19	47	19	47	y	ENSMUSG00000090306.6	Adh6-ps1	chr3	transcribed_unprocessed_pseudogene	alcohol dehydrogenase 6 (class V), pseudogene 1
novel_NIR_12239	chr3	138151152	138152799	+	138151152	138153613	A3SS	ENSMUST00000198126.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000028138.9	Adh5	chr3	protein_coding	alcohol dehydrogenase 5 (class III), chi polypeptide
novel_NIR_12240	chr3	138186561	138195019	-	138186561	138187285	5pMXE	ENSMUST00000199303.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000005813.13	Metap1	chr3	protein_coding	methionyl aminopeptidase 1
novel_NIR_12241	chr3	138233273	138252082	+	138239272	138252082	A5SS&ES	ENSMUST00000196990.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028156.13	Eif4e	chr3	protein_coding	eukaryotic translation initiation factor 4E
novel_NIR_12242	chr3	138671757	138675665	-	138671757	138721307	A5SS	ENSMUST00000029796.11	novel	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.15	2	11	2	11	y	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.11	1	8	1	8	n	ENSMUSG00000028149.13	Rap1gds1	chr3	protein_coding	RAP1, GTP-GDP dissociation stimulator 1
novel_NIR_12243	chr3	138671757	138675669	-	138671757	138721307	A5SS	ENSMUST00000029796.11	novel	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.14	1	6	1	6	n	0.08	1	11	1	11	n	0.00	0	5	0	5	n	0.20	2	8	2	8	y	0.08	1	11	1	11	n	0.00	0	4	0	4	n	0.14	2	12	2	12	n	0.14	1	6	1	6	n	0.00	0	8	0	8	n	ENSMUSG00000028149.13	Rap1gds1	chr3	protein_coding	RAP1, GTP-GDP dissociation stimulator 1
novel_NIR_12244	chr3	138692494	138721307	-	138671757	138721307	A3SS	ENSMUST00000029796.11	novel	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.25	2	6	2	6	y	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	ENSMUSG00000028149.13	Rap1gds1	chr3	protein_coding	RAP1, GTP-GDP dissociation stimulator 1
novel_NIR_12245	chr3	141983759	142009704	-	141983759;141988873	141988730;142009704	ES	ENSMUST00000200650.5	novel	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	0.50	1	1.0	1	0;2	n	0.00	0	0.5	0	0;1	n	-	-	-	-	-	-	1.00	3	0.0	3	0;0	y	0.00	0	0.5	0	0;1	n	-	-	-	-	-	-	0.67	1	0.5	1	0;1	n	0.80	2	0.5	2	0;1	y	0.40	1	1.5	1	0;3	n	0.50	1	1.0	1	0;2	n	ENSMUSG00000028273.16	Pdlim5	chr3	protein_coding	PDZ and LIM domain 5
novel_NIR_12246	chr3	141983759	142009704	-	141983762	142009704	A3SS	ENSMUST00000029941.16	novel	0.03	1	28	1	28	n	0.00	0	13	0	13	n	0.02	1	40	1	40	n	0.00	0	46	0	46	n	0.00	0	54	0	54	n	0.19	3	13	3	13	y	0.00	0	31	0	31	n	0.00	0	35	0	35	n	0.04	1	26	1	26	n	0.04	2	51	2	51	n	0.03	1	37	1	37	n	0.03	1	29	1	29	n	ENSMUSG00000028273.16	Pdlim5	chr3	protein_coding	PDZ and LIM domain 5
novel_NIR_12247	chr3	141983759	142009704	-	141987744	142009704	A3SS&ES	ENSMUST00000200043.5	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.50	1	1	1	1	n	0.33	1	2	1	2	n	ENSMUSG00000028273.16	Pdlim5	chr3	protein_coding	PDZ and LIM domain 5
novel_NIR_12248	chr3	141983759	142009704	-	141988873	142009704	A3SS&ES	ENSMUST00000196220.5	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.67	2	1	2	1	y	0.25	1	3	1	3	n	0.33	1	2	1	2	n	ENSMUSG00000028273.16	Pdlim5	chr3	protein_coding	PDZ and LIM domain 5
novel_NIR_12249	chr3	141983759	142009704	-	141990677	142009704	A3SS&ES	ENSMUST00000195975.5	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000028273.16	Pdlim5	chr3	protein_coding	PDZ and LIM domain 5
novel_NIR_12250	chr3	141983759	142009704	-	142009182	142009704	3pMXE	ENSMUST00000170361.9	novel	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	54	0	54	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.67	2	1	2	1	y	0.50	1	1	1	1	n	1.00	1	0	1	0	n	ENSMUSG00000028273.16	Pdlim5	chr3	protein_coding	PDZ and LIM domain 5
novel_NIR_12251	chr3	142009015	142009704	-	141987744	142009704	A3SS	ENSMUST00000200043.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.60	3	2	3	2	y	ENSMUSG00000028273.16	Pdlim5	chr3	protein_coding	PDZ and LIM domain 5
novel_NIR_12252	chr3	142009015	142009704	-	141988873	142009704	A3SS	ENSMUST00000196220.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.60	3	2	3	2	y	ENSMUSG00000028273.16	Pdlim5	chr3	protein_coding	PDZ and LIM domain 5
novel_NIR_12253	chr3	142009015	142009704	-	141990677	142009704	A3SS	ENSMUST00000195975.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	ENSMUSG00000028273.16	Pdlim5	chr3	protein_coding	PDZ and LIM domain 5
novel_NIR_12254	chr3	142009015	142009704	-	142009182	142009704	A3SS	ENSMUST00000170361.9	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	54	0	54	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	1.00	3	0	3	0	y	ENSMUSG00000028273.16	Pdlim5	chr3	protein_coding	PDZ and LIM domain 5
novel_NIR_12255	chr3	142418802	142424137	+	142406936	142424137	A5SS	ENSMUST00000199519.5	novel	1.00	322	0	322	0	y	1.00	198	0	198	0	y	1.00	377	0	377	0	y	1.00	472	0	472	0	y	1.00	506	0	506	0	y	1.00	172	0	172	0	y	1.00	407	0	407	0	y	1.00	286	0	286	0	y	1.00	343	0	343	0	y	1.00	424	0	424	0	y	1.00	411	0	411	0	y	1.00	455	2	455	2	y	ENSMUSG00000040213.14	Kyat3	chr3	protein_coding	kynurenine aminotransferase 3
novel_NIR_12256	chr3	142418802	142424137	+	142412552	142424137	A5SS	ENSMUST00000106218.8	novel	0.99	322	3	322	3	y	0.96	198	8	198	8	y	1.00	377	0	377	0	y	1.00	472	1	472	1	y	0.99	506	6	506	6	y	1.00	172	0	172	0	y	0.98	407	10	407	10	y	1.00	286	0	286	0	y	1.00	343	1	343	1	y	0.98	424	8	424	8	y	0.98	411	8	411	8	y	0.96	455	20	455	20	y	ENSMUSG00000040213.14	Kyat3	chr3	protein_coding	kynurenine aminotransferase 3
novel_NIR_12257	chr3	142418802	142424137	+	142412556	142424137	A5SS	ENSMUST00000044392.11	novel	1.00	322	0	322	0	y	0.99	198	1	198	1	y	1.00	377	0	377	0	y	1.00	472	1	472	1	y	0.99	506	3	506	3	y	1.00	172	0	172	0	y	1.00	407	1	407	1	y	1.00	286	0	286	0	y	1.00	343	0	343	0	y	1.00	424	2	424	2	y	1.00	411	2	411	2	y	1.00	455	0	455	0	y	ENSMUSG00000040213.14	Kyat3	chr3	protein_coding	kynurenine aminotransferase 3
novel_NIR_12258	chr3	142418896	142424137	+	142406936	142424137	A5SS	ENSMUST00000199519.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000040213.14	Kyat3	chr3	protein_coding	kynurenine aminotransferase 3
novel_NIR_12259	chr3	142418896	142424137	+	142412552	142424137	A5SS	ENSMUST00000106218.8	novel	0.00	0	3	0	3	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	6	0	6	n	1.00	2	0	2	0	y	0.00	0	10	0	10	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	20	0	20	n	ENSMUSG00000040213.14	Kyat3	chr3	protein_coding	kynurenine aminotransferase 3
novel_NIR_12260	chr3	142418896	142424137	+	142412556	142424137	A5SS	ENSMUST00000044392.11	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000040213.14	Kyat3	chr3	protein_coding	kynurenine aminotransferase 3
novel_NIR_12261	chr3	142444386	142449836	+	142444386	142449832	A3SS	ENSMUST00000128096.2	novel	0.22	2	7	2	7	y	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	ENSMUSG00000040213.14	Kyat3	chr3	protein_coding	kynurenine aminotransferase 3
novel_NIR_12262	chr3	142445875	142449832	+	142444386	142449832	A5SS	ENSMUST00000128096.2	novel	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.08	1	11	1	11	n	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	10	0	10	n	0.17	1	5	1	5	n	0.50	2	2	2	2	n	0.22	2	7	2	7	y	ENSMUSG00000040213.14	Kyat3	chr3	protein_coding	kynurenine aminotransferase 3
novel_NIR_12263	chr3	142587381	142597803	+	142587381	142603446	A3SS	ENSMUST00000199962.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000106550.2	Gm43646	chr3	lncRNA	predicted gene 43646
novel_NIR_12264	chr3	142587381	142597803	+	142588747	142597803	5pMXE	ENSMUST00000181882.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000097858.3	9530052C20Rik	chr3	lncRNA	RIKEN cDNA 9530052C20 gene
novel_NIR_12265	chr3	144140478	144141223	-	144140475	144141223	A3SS	ENSMUST00000043325.9	novel	0.05	1	18	1	18	n	0.08	1	12	1	12	n	0.14	5	31	5	31	n	0.05	1	20	1	20	n	0.05	2	39	2	39	n	0.13	3	20	3	20	n	0.22	2	7	2	7	y	0.28	8	21	8	21	y	0.16	3	16	3	16	y	0.14	4	25	4	25	n	0.17	4	19	4	19	y	0.00	0	20	0	20	n	ENSMUSG00000040151.10	Hs2st1	chr3	protein_coding	heparan sulfate 2-O-sulfotransferase 1
novel_NIR_12266	chr3	144452785	144453131	-	144452789	144453131	A3SS	ENSMUST00000029932.14	novel	0.13	2	13	2	13	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.20	2	8	2	8	y	0.33	3	6	3	6	y	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	ENSMUSG00000056025.13	Clca3a1	chr3	protein_coding	chloride channel accessory 3A1
novel_NIR_12267	chr3	144462918	144463719	-	144461092	144463719	A3SS	ENSMUST00000029932.14	novel	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000056025.13	Clca3a1	chr3	protein_coding	chloride channel accessory 3A1
novel_NIR_12268	chr3	144824547	144829972	+	144824420	144829972	A5SS	ENSMUST00000098539.7	novel	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.83	5	1	5	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000028256.17	Odf2l	chr3	protein_coding	outer dense fiber of sperm tails 2-like
novel_NIR_12269	chr3	144824547	144829972	+	144824543	144829972	A5SS	ENSMUST00000098538.9	novel	0.83	5	1	5	1	y	1.00	1	0	1	0	n	0.67	2	1	2	1	y	0.50	1	1	1	1	n	0.50	5	5	5	5	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	1.00	1	0	1	0	n	ENSMUSG00000028256.17	Odf2l	chr3	protein_coding	outer dense fiber of sperm tails 2-like
novel_NIR_12270	chr3	144824547	144829972	+	144825119	144829972	5pMXE	ENSMUST00000199124.5	novel	0.83	5	1	5	1	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.50	5	5	5	5	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	ENSMUSG00000028256.17	Odf2l	chr3	protein_coding	outer dense fiber of sperm tails 2-like
novel_NIR_12271	chr3	144824547	144829972	+	144826439	144829972	5pMXE	ENSMUST00000196857.5	novel	1.00	5	0	5	0	y	0.33	1	2	1	2	n	1.00	2	0	2	0	y	0.33	1	2	1	2	n	0.83	5	1	5	1	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	ENSMUSG00000028256.17	Odf2l	chr3	protein_coding	outer dense fiber of sperm tails 2-like
novel_NIR_12272	chr3	144824689	144829972	+	144824420	144829972	A5SS	ENSMUST00000098539.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000028256.17	Odf2l	chr3	protein_coding	outer dense fiber of sperm tails 2-like
novel_NIR_12273	chr3	144824689	144829972	+	144824543	144829972	A5SS	ENSMUST00000098538.9	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.50	1	1	1	1	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.50	3	3	3	3	y	0.25	1	3	1	3	n	-	-	-	-	-	-	ENSMUSG00000028256.17	Odf2l	chr3	protein_coding	outer dense fiber of sperm tails 2-like
novel_NIR_12274	chr3	144824689	144829972	+	144825119	144829972	5pMXE	ENSMUST00000199124.5	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	0.50	1	1	1	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.33	2	4	2	4	y	1.00	3	0	3	0	y	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000028256.17	Odf2l	chr3	protein_coding	outer dense fiber of sperm tails 2-like
novel_NIR_12275	chr3	144824689	144829972	+	144826439	144829972	5pMXE	ENSMUST00000196857.5	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	ENSMUSG00000028256.17	Odf2l	chr3	protein_coding	outer dense fiber of sperm tails 2-like
novel_NIR_12276	chr3	144825119	144827964	+	144825119	144829972	A3SS	ENSMUST00000199124.5	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000028256.17	Odf2l	chr3	protein_coding	outer dense fiber of sperm tails 2-like
novel_NIR_12277	chr3	144825478	144829972	+	144824420	144829972	A5SS	ENSMUST00000098539.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000028256.17	Odf2l	chr3	protein_coding	outer dense fiber of sperm tails 2-like
novel_NIR_12278	chr3	144825478	144829972	+	144824543	144829972	A5SS	ENSMUST00000098538.9	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.75	3	1	3	1	y	0.17	1	5	1	5	n	0.50	1	1	1	1	n	0.67	2	1	2	1	y	0.50	1	1	1	1	n	0.75	3	1	3	1	y	0.00	0	3	0	3	n	0.40	2	3	2	3	y	-	-	-	-	-	-	ENSMUSG00000028256.17	Odf2l	chr3	protein_coding	outer dense fiber of sperm tails 2-like
novel_NIR_12279	chr3	144825478	144829972	+	144825119	144829972	A5SS	ENSMUST00000199124.5	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.17	1	5	1	5	n	0.50	1	1	1	1	n	0.67	2	1	2	1	y	1.00	1	0	1	0	n	0.43	3	4	3	4	y	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	ENSMUSG00000028256.17	Odf2l	chr3	protein_coding	outer dense fiber of sperm tails 2-like
novel_NIR_12280	chr3	144825478	144829972	+	144826439	144829972	5pMXE	ENSMUST00000196857.5	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.60	3	2	3	2	y	0.50	1	1	1	1	n	0.50	1	1	1	1	n	0.50	2	2	2	2	y	0.50	1	1	1	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	ENSMUSG00000028256.17	Odf2l	chr3	protein_coding	outer dense fiber of sperm tails 2-like
novel_NIR_12281	chr3	145282048	145282588	+	145282048	145282606	A3SS	ENSMUST00000199033.5	novel	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.29	2	5	2	5	y	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	ENSMUSG00000074182.9	Znhit6	chr3	protein_coding	zinc finger, HIT type 6
novel_NIR_12282	chr3	145704865	145706738	+	145704865	145707078	A3SS	ENSMUST00000039517.11	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.80	4	1	4	1	y	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	ENSMUSG00000036863.13	Syde2	chr3	protein_coding	synapse defective 1, Rho GTPase, homolog 2 (C. elegans)
novel_NIR_12283	chr3	146156385	146160703	+	146156385;146160240	146159918;146160703	ES	ENSMUST00000196609.2	novel	0.00	0	19.5	0	0;39	n	0.00	0	23.0	0	0;46	n	0.00	0	32.5	0	0;65	n	0.03	1	33.5	1	2;65	n	0.03	1	32.0	1	0;64	n	0.00	0	26.0	0	0;52	n	0.00	0	37.5	0	0;75	n	0.00	0	25.5	0	1;50	n	0.15	3	17.0	3	2;32	y	0.05	2	37.5	2	1;74	n	0.07	1	13.0	1	1;25	n	0.00	0	30.5	0	2;59	n	ENSMUSG00000028189.13	Ctbs	chr3	protein_coding	chitobiase
novel_NIR_12284	chr3	14616587	14622249	+	14616587	14619364	3pMXE	ENSMUST00000171620.2	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000027550.15	Lrrcc1	chr3	protein_coding	leucine rich repeat and coiled-coil domain containing 1
novel_NIR_12285	chr3	14616587	14622249	+	14616587;14619565	14619364;14622249	ES	ENSMUST00000108370.9	novel	0.00	0	3.0	0	3;3	n	0.00	0	2.5	0	4;1	n	0.00	0	3.5	0	5;2	n	0.00	0	4.5	0	7;2	n	0.00	0	4.0	0	5;3	n	1.00	2	0.0	2	0;0	y	0.00	0	1.0	0	1;1	n	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	0.00	0	5.0	0	7;3	n	0.00	0	1.5	0	1;2	n	0.00	0	2.5	0	4;1	n	ENSMUSG00000027550.15	Lrrcc1	chr3	protein_coding	leucine rich repeat and coiled-coil domain containing 1
novel_NIR_12286	chr3	146181994	146186883	-	146182057	146186883	A3SS	ENSMUST00000197980.5	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000028188.14	Spata1	chr3	protein_coding	spermatogenesis associated 1
novel_NIR_12287	chr3	146187615	146188244	-	146187615	146188248	A5SS	ENSMUST00000123421.6	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.00	0	1	0	1	n	ENSMUSG00000028188.14	Spata1	chr3	protein_coding	spermatogenesis associated 1
novel_NIR_12288	chr3	146199598	146205953	-	146199598	146200711	5pMXE	ENSMUST00000093951.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028188.14	Spata1	chr3	protein_coding	spermatogenesis associated 1
novel_NIR_12289	chr3	146199598	146205953	-	146199598	146205410	5pMXE	ENSMUST00000029839.11	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028188.14	Spata1	chr3	protein_coding	spermatogenesis associated 1
novel_NIR_12290	chr3	146206101	146206350	+	146206101	146209015	A3SS	ENSMUST00000119130.2	novel	0.20	1	4	1	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.25	1	3	1	3	n	ENSMUSG00000068523.13	Gng5	chr3	protein_coding	guanine nucleotide binding protein (G protein), gamma 5
novel_NIR_12291	chr3	146276318;146279938	146279825;146316025	+	146276318	146316025	cassetteExon	ENSMUST00000199489.5	novel	1.00	2.0	0	2;2	0	y	0.00	0.0	2	0;0	2	n	1.00	0.5	0	0;1	0	n	0.00	0.0	2	0;0	2	n	1.00	1.5	0	2;1	0	n	-	-	-	-	-	-	1.00	1.0	0	0;2	0	n	0.00	0.0	1	0;0	1	n	-	-	-	-	-	-	0.64	3.5	2	4;3	2	y	0.20	0.5	2	1;0	2	n	-	-	-	-	-	-	ENSMUSG00000028186.15	Uox	chr3	protein_coding	urate oxidase
novel_NIR_12292	chr3	146279938	146316025	+	146276318	146316025	A5SS	ENSMUST00000199489.5	novel	1.00	2	0	2	0	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.60	3	2	3	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000028186.15	Uox	chr3	protein_coding	urate oxidase
novel_NIR_12293	chr3	146301394	146316025	+	146276318	146316025	A5SS	ENSMUST00000199489.5	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	ENSMUSG00000028186.15	Uox	chr3	protein_coding	urate oxidase
novel_NIR_12294	chr3	146302262	146303315	-	146302262	146321128	A5SS	ENSMUST00000200633.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	7	0	7	0	y	1.00	7	0	7	0	y	1.00	3	0	3	0	y	1.00	16	0	16	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	11	0	11	0	y	1.00	4	0	4	0	y	1.00	5	0	5	0	y	ENSMUSG00000028185.13	Dnase2b	chr3	protein_coding	deoxyribonuclease II beta
novel_NIR_12295	chr3	146302262	146304219	-	146302262	146321128	A5SS	ENSMUST00000200633.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	ENSMUSG00000028185.13	Dnase2b	chr3	protein_coding	deoxyribonuclease II beta
novel_NIR_12296	chr3	146307965	146316025	+	146276318	146316025	A5SS	ENSMUST00000199489.5	novel	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000028186.15	Uox	chr3	protein_coding	urate oxidase
novel_NIR_12297	chr3	146315821	146316025	+	146276318	146316025	A5SS	ENSMUST00000199489.5	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	8	0	8	0	y	0.78	7	2	7	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000028186.15	Uox	chr3	protein_coding	urate oxidase
novel_NIR_12298	chr3	146316172	146318038	+	146302988	146318038	A5SS	ENSMUST00000121133.2	novel	0.22	5	18	5	18	y	0.00	0	17	0	17	n	0.07	1	13	1	13	n	0.00	0	38	0	38	n	0.03	1	31	1	31	n	0.00	0	14	0	14	n	0.00	0	39	0	39	n	0.00	0	16	0	16	n	0.04	1	22	1	22	n	0.00	0	40	0	40	n	0.00	0	25	0	25	n	0.13	8	53	8	53	n	ENSMUSG00000028186.15	Uox	chr3	protein_coding	urate oxidase
novel_NIR_12299	chr3	14646266	14652370	+	14644083	14652370	A5SS	ENSMUST00000029069.13	novel	0.00	0	16	0	16	n	0.20	2	8	2	8	y	0.00	0	21	0	21	n	0.05	1	20	1	20	n	0.11	3	24	3	24	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.06	1	15	1	15	n	0.00	0	14	0	14	n	0.05	1	18	1	18	n	ENSMUSG00000027552.15	E2f5	chr3	protein_coding	E2F transcription factor 5
novel_NIR_12300	chr3	14653373	14667708	+	14666106	14667708	A5SS&ES	ENSMUST00000029069.13	novel	0.00	0	18	0	18	n	0.00	0	18	0	18	n	0.00	0	20	0	20	n	0.06	1	17	1	17	n	0.11	3	25	3	25	n	0.00	0	7	0	7	n	0.04	1	23	1	23	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.04	1	27	1	27	n	0.16	3	16	3	16	y	0.12	3	21	3	21	n	ENSMUSG00000027552.15	E2f5	chr3	protein_coding	E2F transcription factor 5
novel_NIR_12301	chr3	14667772	14668184	+	14667772	14668698	A3SS	ENSMUST00000029069.13	novel	0.17	4	19	4	19	y	0.00	0	15	0	15	n	0.00	0	21	0	21	n	0.00	0	25	0	25	n	0.00	0	27	0	27	n	0.00	0	17	0	17	n	0.00	0	28	0	28	n	0.12	2	14	2	14	n	0.00	0	12	0	12	n	0.00	0	31	0	31	n	0.05	1	21	1	21	n	0.04	1	23	1	23	n	ENSMUSG00000027552.15	E2f5	chr3	protein_coding	E2F transcription factor 5
novel_NIR_12302	chr3	14843468	14915226	-	14843468	14873362	5pMXE	ENSMUST00000181860.8	novel	1.00	5	0	5	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	7	0	7	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	0.82	9	2	9	2	y	ENSMUSG00000027556.16	Car1	chr3	protein_coding	carbonic anhydrase 1
novel_NIR_12303	chr3	14843468	14916738	-	14843468	14873362	5pMXE	ENSMUST00000181860.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.33	1	2	1	2	n	ENSMUSG00000027556.16	Car1	chr3	protein_coding	carbonic anhydrase 1
novel_NIR_12304	chr3	148660371	148695519	-	148660371	148694226	5pMXE	ENSMUST00000098518.3	novel	0.33	3	6	3	6	y	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.50	4	4	4	4	y	0.43	9	12	9	12	y	0.46	6	7	6	7	y	0.00	0	7	0	7	n	0.36	4	7	4	7	y	0.57	4	3	4	3	y	0.15	3	17	3	17	y	0.50	4	4	4	4	y	0.50	7	7	7	7	y	ENSMUSG00000028184.13	Adgrl2	chr3	protein_coding	adhesion G protein-coupled receptor L2
novel_NIR_12305	chr3	148660371	148695519	-	148660371	148696076	A5SS	ENSMUST00000196526.5	novel	0.33	3	6	3	6	y	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.50	4	4	4	4	y	0.82	9	2	9	2	y	1.00	6	0	6	0	y	0.00	0	3	0	3	n	0.67	4	2	4	2	y	0.33	4	8	4	8	y	0.43	3	4	3	4	y	0.80	4	1	4	1	y	0.54	7	6	7	6	y	ENSMUSG00000028184.13	Adgrl2	chr3	protein_coding	adhesion G protein-coupled receptor L2
novel_NIR_12306	chr3	148694989;148704509	148704479;148706607	+	148694989	148706607	cassetteExon	ENSMUST00000196445.2	novel	0.52	7.5	7	7;8	7	y	0.50	8.0	8	5;11	8	y	0.33	4.5	9	5;4	9	y	1.00	3.0	0	3;3	0	y	0.11	1.0	8	1;1	8	n	0.14	0.5	3	0;1	3	n	0.00	0.0	9	0;0	9	n	0.00	0.0	3	0;0	3	n	0.33	0.5	1	1;0	1	n	0.43	4.5	6	4;5	6	y	0.69	4.5	2	4;5	2	y	0.25	2.0	6	1;3	6	n	ENSMUSG00000104786.2	Gm43573	chr3	lncRNA	predicted gene 43573
novel_NIR_12307	chr3	148706771	148711268	+	148706771	148709465	3pMXE	ENSMUST00000196445.2	novel	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.10	2	18	2	18	n	0.08	1	11	1	11	n	0.22	2	7	2	7	y	ENSMUSG00000104786.2	Gm43573	chr3	lncRNA	predicted gene 43573
novel_NIR_12308	chr3	14962345	14962974	+	14961822	14962974	A5SS	ENSMUST00000029078.9	novel	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.00	0	16	0	16	n	0.07	1	14	1	14	n	0.00	0	4	0	4	n	0.00	0	25	0	25	n	0.30	3	7	3	7	y	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.00	0	14	0	14	n	ENSMUSG00000027562.13	Car2	chr3	protein_coding	carbonic anhydrase 2
novel_NIR_12309	chr3	151899255	151910833	-	151899255	151900036	A5SS&ES	ENSMUST00000029669.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028035.14	Dnajb4	chr3	protein_coding	DnaJ heat shock protein family (Hsp40) member B4
novel_NIR_12310	chr3	151899255	151910833	-	151899255	151900687	A5SS&ES	ENSMUST00000153355.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028035.14	Dnajb4	chr3	protein_coding	DnaJ heat shock protein family (Hsp40) member B4
novel_NIR_12311	chr3	151899255	151910833	-	151899255	151915472	A5SS	ENSMUST00000144950.8	novel	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.15	2	11	2	11	y	0.00	0	5	0	5	n	0.00	0	7	0	7	n	ENSMUSG00000028035.14	Dnajb4	chr3	protein_coding	DnaJ heat shock protein family (Hsp40) member B4
novel_NIR_12312	chr3	151899255	151914521	-	151899255	151900036	A5SS&ES	ENSMUST00000029669.4	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028035.14	Dnajb4	chr3	protein_coding	DnaJ heat shock protein family (Hsp40) member B4
novel_NIR_12313	chr3	151899255	151914521	-	151899255	151915472	A5SS	ENSMUST00000144950.8	novel	0.22	2	7	2	7	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.21	3	11	3	11	y	0.00	0	5	0	5	n	0.00	0	7	0	7	n	ENSMUSG00000028035.14	Dnajb4	chr3	protein_coding	DnaJ heat shock protein family (Hsp40) member B4
novel_NIR_12314	chr3	151899255	151914521	-	151899255;151900737	151900687;151914521	ES	ENSMUST00000153355.6	novel	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1.5	0	3;0	n	0.00	0	1.5	0	3;0	n	-	-	-	-	-	-	0.00	0	1.5	0	2;1	n	0.00	0	1.0	0	2;0	n	-	-	-	-	-	-	0.86	3	0.5	3	1;0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028035.14	Dnajb4	chr3	protein_coding	DnaJ heat shock protein family (Hsp40) member B4
novel_NIR_12315	chr3	151899301	151900687	-	151899255	151900687	A3SS	ENSMUST00000153355.6	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000028035.14	Dnajb4	chr3	protein_coding	DnaJ heat shock protein family (Hsp40) member B4
novel_NIR_12316	chr3	151899301	151900687	-	151899301	151915472	A5SS	ENSMUST00000197941.2	novel	0.00	0	2	0	2	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	1.00	2	0	2	0	y	ENSMUSG00000028035.14	Dnajb4	chr3	protein_coding	DnaJ heat shock protein family (Hsp40) member B4
novel_NIR_12317	chr3	151900737	151915472	-	151885283	151915472	A3SS	ENSMUST00000134701.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000028035.14	Dnajb4	chr3	protein_coding	DnaJ heat shock protein family (Hsp40) member B4
novel_NIR_12318	chr3	151900737	151915472	-	151899255	151915472	A3SS	ENSMUST00000144950.8	novel	0.00	0	7	0	7	n	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.12	1	7	1	7	n	0.07	1	14	1	14	n	0.20	1	4	1	4	n	0.22	2	7	2	7	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.17	1	5	1	5	n	0.00	0	7	0	7	n	ENSMUSG00000028035.14	Dnajb4	chr3	protein_coding	DnaJ heat shock protein family (Hsp40) member B4
novel_NIR_12319	chr3	151900737	151915472	-	151899301	151915472	A3SS	ENSMUST00000197941.2	novel	0.00	0	2	0	2	n	1.00	2	0	2	0	n	-	-	-	-	-	-	0.17	1	5	1	5	n	0.33	1	2	1	2	n	1.00	1	0	1	0	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.20	1	4	1	4	n	-	-	-	-	-	-	ENSMUSG00000028035.14	Dnajb4	chr3	protein_coding	DnaJ heat shock protein family (Hsp40) member B4
novel_NIR_12320	chr3	151900737	151915472	-	151900737;151914583	151914521;151915472	ES	ENSMUST00000153355.6	novel	0.00	0	1.0	0	0;2	n	0.80	2	0.5	2	0;1	y	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	1.00	1	0.0	1	0;0	n	1.00	1	0.0	1	0;0	n	0.80	2	0.5	2	1;0	y	0.00	0	0.5	0	0;1	n	-	-	-	-	-	-	0.00	0	1.0	0	0;2	n	1.00	1	0.0	1	0;0	n	0.00	0	1.0	0	0;2	n	ENSMUSG00000028035.14	Dnajb4	chr3	protein_coding	DnaJ heat shock protein family (Hsp40) member B4
novel_NIR_12321	chr3	151900737	151915472	-	151909540	151915472	A3SS&ES	ENSMUST00000029669.4	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000028035.14	Dnajb4	chr3	protein_coding	DnaJ heat shock protein family (Hsp40) member B4
novel_NIR_12322	chr3	151937659	151939245	+	151937659	151937892	3pMXE	ENSMUST00000200524.5	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.00	0	7	0	7	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000028034.16	Fubp1	chr3	protein_coding	far upstream element (FUSE) binding protein 1
novel_NIR_12323	chr3	151937659	151939245	+	151937659	151940161	A3SS	ENSMUST00000200056.2	novel	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.17	1	5	1	5	n	ENSMUSG00000028034.16	Fubp1	chr3	protein_coding	far upstream element (FUSE) binding protein 1
novel_NIR_12324	chr3	151939339	151940161	+	151937659	151940161	A5SS	ENSMUST00000200056.2	novel	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.25	2	6	2	6	y	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.44	4	5	4	5	n	ENSMUSG00000028034.16	Fubp1	chr3	protein_coding	far upstream element (FUSE) binding protein 1
novel_NIR_12325	chr3	151961002	151970546	-	151961002	151967128	5pMXE	ENSMUST00000196504.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039103.13	Nexn	chr3	protein_coding	nexilin
novel_NIR_12326	chr3	151961002	151970546	-	151961002	151968101	5pMXE	ENSMUST00000199685.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039103.13	Nexn	chr3	protein_coding	nexilin
novel_NIR_12327	chr3	151961002	151970546	-	151961002	151968915	5pMXE	ENSMUST00000198648.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039103.13	Nexn	chr3	protein_coding	nexilin
novel_NIR_12328	chr3	151961002	151970546	-	151961002	151971350	A5SS	ENSMUST00000199470.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.29	2	5	2	5	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039103.13	Nexn	chr3	protein_coding	nexilin
novel_NIR_12329	chr3	151961002	151970546	-	151961002	151971854	A5SS	ENSMUST00000046045.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039103.13	Nexn	chr3	protein_coding	nexilin
novel_NIR_12330	chr3	152062101	152063477	+	152052276	152063477	A5SS	ENSMUST00000117492.9	novel	0.00	0	18	0	18	n	0.18	2	9	2	9	y	0.04	1	27	1	27	n	0.00	0	28	0	28	n	0.00	0	33	0	33	n	0.00	0	25	0	25	n	0.00	0	22	0	22	n	0.00	0	20	0	20	n	0.00	0	16	0	16	n	0.00	0	25	0	25	n	0.00	0	13	0	13	n	0.04	1	23	1	23	n	ENSMUSG00000025437.16	Usp33	chr3	protein_coding	ubiquitin specific peptidase 33
novel_NIR_12331	chr3	152134469	152152266	+	152128408	152152266	A5SS	ENSMUST00000197987.5	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.80	4	1	4	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000039068.17	Zzz3	chr3	protein_coding	zinc finger, ZZ domain containing 3
novel_NIR_12332	chr3	152134469	152152266	+	152134469	152152436	A3SS	ENSMUST00000106100.9	novel	0.05	1	18	1	18	n	0.14	1	6	1	6	n	0.04	1	27	1	27	n	0.05	1	18	1	18	n	0.11	4	34	4	34	n	0.00	0	9	0	9	n	0.00	0	25	0	25	n	0.00	0	9	0	9	n	0.18	2	9	2	9	y	0.00	0	27	0	27	n	0.10	1	9	1	9	n	0.00	0	20	0	20	n	ENSMUSG00000039068.17	Zzz3	chr3	protein_coding	zinc finger, ZZ domain containing 3
novel_NIR_12333	chr3	152134484	152152436	+	152125777	152152436	A5SS	ENSMUST00000200570.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.80	4	1	4	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000039068.17	Zzz3	chr3	protein_coding	zinc finger, ZZ domain containing 3
novel_NIR_12334	chr3	152134484	152152436	+	152128408	152152436	A5SS	ENSMUST00000106103.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.36	4	7	4	7	y	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000039068.17	Zzz3	chr3	protein_coding	zinc finger, ZZ domain containing 3
novel_NIR_12335	chr3	152134484	152152436	+	152143527	152152436	A5SS&ES	ENSMUST00000150802.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039068.17	Zzz3	chr3	protein_coding	zinc finger, ZZ domain containing 3
novel_NIR_12336	chr3	152134484	152152436	+	152152326	152152436	A5SS&ES	ENSMUST00000197987.5	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.80	4	1	4	1	y	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000039068.17	Zzz3	chr3	protein_coding	zinc finger, ZZ domain containing 3
novel_NIR_12337	chr3	152428213	152440150	+	152428213	152448126	A3SS	ENSMUST00000200224.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000039047.18	Pigk	chr3	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class K
novel_NIR_12338	chr3	152472160	152473175	+	152472160	152528264	A3SS	ENSMUST00000162642.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000039047.18	Pigk	chr3	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class K
novel_NIR_12339	chr3	152472160	152473175	+	152472160	152535233	A3SS	ENSMUST00000161596.6	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039047.18	Pigk	chr3	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class K
novel_NIR_12340	chr3	154312168	154319459	+	154312168	154324097	A3SS	ENSMUST00000195103.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000028199.19	Cryz	chr3	protein_coding	crystallin, zeta
novel_NIR_12341	chr3	157238450	157239647	-	157233731	157239647	A3SS	ENSMUST00000196791.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	n	0.50	2	2	2	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000105834.2	4930592C13Rik	chr3	lncRNA	RIKEN cDNA 4930592C13 gene
novel_NIR_12342	chr3	157250759	157251716	+	157250759	157251712	A3SS	ENSMUST00000106057.8	novel	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.38	3	5	3	5	y	ENSMUSG00000028180.19	Zranb2	chr3	protein_coding	zinc finger, RAN-binding domain containing 2
novel_NIR_12343	chr3	157602967	157609357	-	157602967	157603219	5pMXE	ENSMUST00000129805.2	novel	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000028179.13	Cth	chr3	protein_coding	cystathionase (cystathionine gamma-lyase)
novel_NIR_12344	chr3	157602967	157630503	-	157602967	157603219	5pMXE	ENSMUST00000129805.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000028179.13	Cth	chr3	protein_coding	cystathionase (cystathionine gamma-lyase)
novel_NIR_12345	chr3	157717837	157717947	-	157717840	157717947	A3SS	ENSMUST00000121326.8	novel	0.11	18	142	18	142	n	0.04	7	154	7	154	n	0.06	13	206	13	206	n	0.09	14	138	14	138	n	0.16	32	164	32	164	y	0.14	15	94	15	94	n	0.11	23	182	23	182	n	0.14	12	76	12	76	n	0.15	26	142	26	142	y	0.09	20	197	20	197	n	0.07	10	126	10	126	n	0.10	21	180	21	180	n	ENSMUSG00000055436.19	Srsf11	chr3	protein_coding	serine and arginine-rich splicing factor 11
novel_NIR_12346	chr3	157723528;157724835	157724724;157724949	-	157723528	157724949	cassetteExon	ENSMUST00000121326.8	novel	0.05	6.0	106	9;3	106	n	0.16	11.5	60	16;7	60	y	0.05	6.0	112	8;4	112	n	0.04	4.0	87	6;2	87	n	0.03	3.5	120	4;3	120	n	0.04	2.0	54	4;0	54	n	0.08	9.5	108	13;6	108	n	0.03	1.5	48	3;0	48	n	0.05	4.0	71	8;0	71	n	0.04	4.0	87	7;1	87	n	0.03	2.0	78	3;1	78	n	0.02	2.5	113	4;1	113	n	ENSMUSG00000055436.19	Srsf11	chr3	protein_coding	serine and arginine-rich splicing factor 11
novel_NIR_12347	chr3	157728587	157728846	-	157728587	157729760	A5SS	ENSMUST00000140491.8	novel	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000055436.19	Srsf11	chr3	protein_coding	serine and arginine-rich splicing factor 11
novel_NIR_12348	chr3	157731577	157732362	-	157728996	157732362	A3SS	ENSMUST00000147304.3	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	ENSMUSG00000055436.19	Srsf11	chr3	protein_coding	serine and arginine-rich splicing factor 11
novel_NIR_12349	chr3	157731577	157732362	-	157729868	157732362	A3SS	ENSMUST00000126716.9	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.25	3	9	3	9	y	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	ENSMUSG00000055436.19	Srsf11	chr3	protein_coding	serine and arginine-rich splicing factor 11
novel_NIR_12350	chr3	157731577	157732362	-	157730398	157732362	A3SS	ENSMUST00000089922.12	novel	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.50	3	3	3	3	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000055436.19	Srsf11	chr3	protein_coding	serine and arginine-rich splicing factor 11
novel_NIR_12351	chr3	157737285	157740409	-	157737285	157737628	A5SS&ES	ENSMUST00000137444.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000055436.19	Srsf11	chr3	protein_coding	serine and arginine-rich splicing factor 11
novel_NIR_12352	chr3	157740552	157742153	-	157737703	157742153	A3SS	ENSMUST00000137444.8	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	ENSMUSG00000055436.19	Srsf11	chr3	protein_coding	serine and arginine-rich splicing factor 11
novel_NIR_12353	chr3	157742513	157746074	+	157742513	157746078	A3SS	ENSMUST00000072080.10	novel	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	28	0	28	n	0.00	0	17	0	17	n	0.17	2	10	2	10	y	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.07	1	13	1	13	n	0.00	0	6	0	6	n	0.00	0	20	0	20	n	ENSMUSG00000063052.10	Lrrc40	chr3	protein_coding	leucine rich repeat containing 40
novel_NIR_12354	chr3	157742513	157746074	+	157742513	157749198	A3SS	ENSMUST00000156597.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000063052.10	Lrrc40	chr3	protein_coding	leucine rich repeat containing 40
novel_NIR_12355	chr3	157742513	157746074	+	157742513	157754038	A3SS	ENSMUST00000200540.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000063052.10	Lrrc40	chr3	protein_coding	leucine rich repeat containing 40
novel_NIR_12356	chr3	159629216	159632623	+	159629216	159639887	A3SS	ENSMUST00000068952.10	novel	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.22	2	7	2	7	y	0.00	0	1	0	1	n	0.00	0	13	0	13	n	-	-	-	-	-	-	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	ENSMUSG00000028173.11	Wls	chr3	protein_coding	wntless WNT ligand secretion mediator
novel_NIR_12357	chr3	16002349;16013648	16013582;16017483	-	16002349	16017483	cassetteExon	ENSMUST00000194367.6	novel	0.00	0.0	12	0;0	12	n	0.04	0.5	11	0;1	11	n	0.14	1.0	6	0;2	6	n	0.00	0.0	1	0;0	1	n	0.36	4.5	8	4;5	8	y	0.20	0.5	2	0;1	2	n	0.33	0.5	1	1;0	1	n	0.43	1.5	2	2;1	2	n	0.08	0.5	6	1;0	6	n	0.14	0.5	3	1;0	3	n	0.04	0.5	12	1;0	12	n	0.00	0.0	5	0;0	5	n	ENSMUSG00000078780.8	Gm5150	chr3	protein_coding	predicted gene 5150
novel_NIR_12358	chr3	16013648	16017483	-	16002349	16017483	A3SS	ENSMUST00000194367.6	novel	0.00	0	12	0	12	n	0.08	1	11	1	11	n	0.25	2	6	2	6	y	0.00	0	1	0	1	n	0.38	5	8	5	8	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	ENSMUSG00000078780.8	Gm5150	chr3	protein_coding	predicted gene 5150
novel_NIR_12359	chr3	16045150	16060313	-	16045150	16060414	A5SS	ENSMUST00000194367.6	novel	0.00	0	6	0	6	n	-	-	-	-	-	-	0.50	3	3	3	3	y	0.00	0	2	0	2	n	0.18	2	9	2	9	y	0.00	0	3	0	3	n	0.17	1	5	1	5	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000078780.8	Gm5150	chr3	protein_coding	predicted gene 5150
novel_NIR_12360	chr3	16237684	16241131	+	16237684;16238110	16238086;16241131	ES	ENSMUST00000193598.5	novel	0.00	0	24.5	0	44;5	n	0.00	0	10.0	0	17;3	n	0.02	1	46.0	1	80;12	n	0.00	0	41.5	0	76;7	n	0.00	0	28.5	0	53;4	n	0.00	0	16.5	0	29;4	n	0.00	0	30.0	0	52;8	n	0.22	7	24.5	7	49;0	y	0.00	0	23.5	0	41;6	n	0.05	2	34.5	2	58;11	n	0.00	0	16.5	0	31;2	n	0.03	1	31.5	1	60;3	n	ENSMUSG00000047213.15	Ythdf3	chr3	protein_coding	YTH N6-methyladenosine RNA binding protein 3
novel_NIR_12361	chr3	16237684	16243642	+	16237684;16238110	16238086;16243642	ES	ENSMUST00000108345.9	novel	0.17	8	39.5	8	44;35	y	0.10	2	19.0	2	17;21	n	0.15	13	75.0	13	80;70	y	0.03	2	75.5	2	76;75	n	0.05	3	52.0	3	53;51	n	0.03	1	28.0	1	29;27	n	0.16	9	46.5	9	52;41	y	0.04	2	49.5	2	49;50	n	0.13	5	33.0	5	41;25	n	0.05	3	57.5	3	58;57	n	0.00	0	32.0	0	31;33	n	0.05	3	58.5	3	60;57	n	ENSMUSG00000047213.15	Ythdf3	chr3	protein_coding	YTH N6-methyladenosine RNA binding protein 3
novel_NIR_12362	chr3	16243727	16257998	+	16243727	16257351	A3SS&ES	ENSMUST00000108346.5	novel	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.20	4	16	4	16	y	0.00	0	18	0	18	n	0.00	0	29	0	29	n	0.00	0	19	0	19	n	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.00	0	16	0	16	n	0.00	0	25	0	25	n	0.00	0	16	0	16	n	0.00	0	34	0	34	n	ENSMUSG00000047213.15	Ythdf3	chr3	protein_coding	YTH N6-methyladenosine RNA binding protein 3
novel_NIR_12363	chr3	19188369	19189007	-	19188387	19189007	A3SS	ENSMUST00000029125.10	novel	0.11	9	72	9	72	n	0.05	4	76	4	76	n	0.00	0	95	0	95	n	0.05	5	93	5	93	n	0.09	13	124	13	124	n	0.02	1	45	1	45	n	0.10	11	100	11	100	n	0.04	2	45	2	45	n	0.20	11	44	11	44	y	0.05	5	88	5	88	n	0.11	9	73	9	73	n	0.15	14	81	14	81	y	ENSMUSG00000027599.10	Armc1	chr3	protein_coding	armadillo repeat containing 1
novel_NIR_12364	chr3	19281991	19283828	+	19281991	19294808	A3SS	ENSMUST00000141455.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000087108.2	Gm16093	chr3	lncRNA	predicted gene 16093
novel_NIR_12365	chr3	20018538	20020403	+	20011593	20020403	A5SS	ENSMUST00000128615.8	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.73	19	7	19	7	y	-	-	-	-	-	-	0.50	7	7	7	7	y	0.75	15	5	15	5	y	0.64	9	5	9	5	y	0.00	0	8	0	8	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000003617.17	Cp	chr3	protein_coding	ceruloplasmin
novel_NIR_12366	chr3	20034897	20036127	+	20035005	20036127	A5SS	ENSMUST00000172605.2	novel	0.25	1	3	1	3	n	-	-	-	-	-	-	0.78	14	4	14	4	y	-	-	-	-	-	-	0.67	6	3	6	3	y	0.69	11	5	11	5	y	0.46	6	7	6	7	y	0.47	7	8	7	8	y	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	0.82	9	2	9	2	y	ENSMUSG00000003617.17	Cp	chr3	protein_coding	ceruloplasmin
novel_NIR_12367	chr3	20042236	20059631	+	20043382	20059631	5pMXE	ENSMUST00000173779.2	novel	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	23	0	23	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.19	3	13	3	13	y	0.00	0	21	0	21	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	11	0	11	n	ENSMUSG00000003617.17	Cp	chr3	protein_coding	ceruloplasmin
novel_NIR_12368	chr3	20043382	20046277	+	20043382	20059631	A3SS	ENSMUST00000108329.8	novel	0.44	8	10	8	10	y	0.56	19	15	19	15	y	0.70	53	23	53	23	y	0.37	7	12	7	12	y	0.68	26	12	26	12	y	0.63	22	13	22	13	y	0.50	21	21	21	21	y	0.74	31	11	31	11	y	0.45	10	12	10	12	y	0.43	9	12	9	12	y	0.48	13	14	13	14	y	0.00	0	11	0	11	n	ENSMUSG00000003617.17	Cp	chr3	protein_coding	ceruloplasmin
novel_NIR_12369	chr3	20043382	20046675	+	20043382	20059631	A3SS	ENSMUST00000108329.8	novel	0.81	42	10	42	10	y	0.86	90	15	90	15	y	0.92	278	23	278	23	y	0.79	46	12	46	12	y	0.93	171	12	171	12	y	0.93	167	13	167	13	y	0.86	133	21	133	21	y	0.91	118	11	118	11	y	0.81	50	12	50	12	y	0.80	49	12	49	12	y	0.79	52	14	52	14	y	0.86	65	11	65	11	y	ENSMUSG00000003617.17	Cp	chr3	protein_coding	ceruloplasmin
novel_NIR_12370	chr3	20046391	20046673	+	20043404	20046673	A5SS	ENSMUST00000172860.2	novel	0.11	1	8	1	8	n	0.00	0	9	0	9	n	0.00	0	34	0	34	n	0.00	0	3	0	3	n	0.08	2	22	2	22	n	0.07	2	26	2	26	n	0.05	1	19	1	19	n	0.00	0	12	0	12	n	0.20	1	4	1	4	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.25	2	6	2	6	y	ENSMUSG00000003617.17	Cp	chr3	protein_coding	ceruloplasmin
novel_NIR_12371	chr3	22131118	22194599	+	22131118	22143577	A3SS&ES	ENSMUST00000193734.6	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000027630.14	Tbl1xr1	chr3	protein_coding	transducin (beta)-like 1X-linked receptor 1
novel_NIR_12372	chr3	22131118	22194599	+	22131118	22157031	A3SS&ES	ENSMUST00000200943.4	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	2	4	2	4	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000027630.14	Tbl1xr1	chr3	protein_coding	transducin (beta)-like 1X-linked receptor 1
novel_NIR_12373	chr3	22131118	22194599	+	22131118	22233367	A3SS	ENSMUST00000200793.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027630.14	Tbl1xr1	chr3	protein_coding	transducin (beta)-like 1X-linked receptor 1
novel_NIR_12374	chr3	22131118	22194599	+	22193649	22194599	5pMXE	ENSMUST00000202356.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027630.14	Tbl1xr1	chr3	protein_coding	transducin (beta)-like 1X-linked receptor 1
novel_NIR_12375	chr3	24389508	24403007	-	24389508	24467514	A5SS	ENSMUST00000203414.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000102758.4	Naaladl2	chr3	protein_coding	N-acetylated alpha-linked acidic dipeptidase-like 2
novel_NIR_12376	chr3	24395689	24467514	-	24389508	24467514	A3SS	ENSMUST00000203414.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.75	3	1	3	1	y	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000102758.4	Naaladl2	chr3	protein_coding	N-acetylated alpha-linked acidic dipeptidase-like 2
novel_NIR_12377	chr3	24606214	24789278	-	24606214	24948151	A5SS	ENSMUST00000204227.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000102758.4	Naaladl2	chr3	protein_coding	N-acetylated alpha-linked acidic dipeptidase-like 2
novel_NIR_12378	chr3	27276543	27276817	+	27242814	27276817	A5SS	ENSMUST00000140872.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027698.15	Nceh1	chr3	protein_coding	neutral cholesterol ester hydrolase 1
novel_NIR_12379	chr3	27276543	27276817	+	27261599	27276817	A5SS	ENSMUST00000138947.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027698.15	Nceh1	chr3	protein_coding	neutral cholesterol ester hydrolase 1
novel_NIR_12380	chr3	27697234	27736887	-	27697238	27736887	A3SS	ENSMUST00000195008.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.75	3	1	3	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039286.13	Fndc3b	chr3	protein_coding	fibronectin type III domain containing 3B
novel_NIR_12381	chr3	27697234	27764495	-	27697238	27764495	A3SS	ENSMUST00000046157.10	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.14	3	18	3	18	n	0.80	4	1	4	1	y	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000039286.13	Fndc3b	chr3	protein_coding	fibronectin type III domain containing 3B
novel_NIR_12382	chr3	27697234	27765269	-	27697238	27765269	A3SS	ENSMUST00000191684.2	novel	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	40	0	40	n	0.00	0	3	0	3	n	0.00	0	21	0	21	n	0.00	0	17	0	17	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.67	2	1	2	1	y	0.00	0	5	0	5	n	ENSMUSG00000039286.13	Fndc3b	chr3	protein_coding	fibronectin type III domain containing 3B
novel_NIR_12383	chr3	27697238	27764520	-	27697238	27764495	A5SS	ENSMUST00000046157.10	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.18	4	18	4	18	y	0.00	0	1	0	1	n	0.00	0	13	0	13	n	0.30	3	7	3	7	y	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039286.13	Fndc3b	chr3	protein_coding	fibronectin type III domain containing 3B
novel_NIR_12384	chr3	27697238	27764520	-	27697238	27765269	A5SS	ENSMUST00000191684.2	novel	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.09	4	40	4	40	n	0.00	0	3	0	3	n	0.00	0	21	0	21	n	0.15	3	17	3	17	y	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	ENSMUSG00000039286.13	Fndc3b	chr3	protein_coding	fibronectin type III domain containing 3B
novel_NIR_12385	chr3	27697238	27764520	-	27697238;27736963	27736887;27764520	ES	ENSMUST00000195008.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.62	4	2.5	4	5;0	y	0.00	0	0.5	0	1;0	n	0.00	0	3.0	0	3;3	n	0.46	3	3.5	3	6;1	y	-	-	-	-	-	-	0.00	0	4.5	0	9;0	n	0.00	0	0.5	0	1;0	n	0.00	0	1.0	0	2;0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039286.13	Fndc3b	chr3	protein_coding	fibronectin type III domain containing 3B
novel_NIR_12386	chr3	27736963	27737059	-	27736963	27764520	A5SS	ENSMUST00000195008.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039286.13	Fndc3b	chr3	protein_coding	fibronectin type III domain containing 3B
novel_NIR_12387	chr3	27736963	27764495	-	27736963	27764520	A5SS	ENSMUST00000195008.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039286.13	Fndc3b	chr3	protein_coding	fibronectin type III domain containing 3B
novel_NIR_12388	chr3	27736963	27765269	-	27736963	27764520	5pMXE	ENSMUST00000195008.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039286.13	Fndc3b	chr3	protein_coding	fibronectin type III domain containing 3B
novel_NIR_12389	chr3	28033927	28078312	+	28006811	28078312	A5SS	ENSMUST00000120834.8	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	11	0	11	n	0.25	2	6	2	6	y	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.12	1	7	1	7	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.33	3	6	3	6	y	ENSMUSG00000027695.17	Pld1	chr3	protein_coding	phospholipase D1
novel_NIR_12390	chr3	28033927	28078312	+	28038485	28078312	5pMXE	ENSMUST00000067757.11	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.20	2	8	2	8	y	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.21	3	11	3	11	y	ENSMUSG00000027695.17	Pld1	chr3	protein_coding	phospholipase D1
novel_NIR_12391	chr3	28859730	28860649	+	28859730	28860652	A3SS	ENSMUST00000195519.6	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	1.00	5	0	5	0	y	ENSMUSG00000039221.11	Rpl22l1	chr3	protein_coding	ribosomal protein L22 like 1
novel_NIR_12392	chr3	30873085	30873725	+	30873085	30873710	A3SS	ENSMUST00000195072.2	novel	0.50	29	29	29	29	y	0.47	21	24	21	24	y	0.55	46	37	46	37	y	0.51	19	18	19	18	y	0.60	35	23	35	23	y	0.46	26	30	26	30	y	0.59	46	32	46	32	y	0.60	18	12	18	12	y	0.49	26	27	26	27	y	0.45	36	44	36	44	y	0.51	36	35	36	35	y	0.61	30	19	30	19	y	ENSMUSG00000027706.9	Sec62	chr3	protein_coding	SEC62 homolog (S. cerevisiae)
novel_NIR_12393	chr3	30963283	30968244	-	30961639	30968244	A3SS	ENSMUST00000168645.8	novel	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.00	0	25	0	25	n	0.00	0	16	0	16	n	0.00	0	14	0	14	n	0.00	0	14	0	14	n	0.25	2	6	2	6	y	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	ENSMUSG00000037652.16	Phc3	chr3	protein_coding	polyhomeotic 3
novel_NIR_12394	chr3	30968450	30968567	-	30968475	30968567	A3SS	ENSMUST00000168645.8	novel	0.43	3	4	3	4	y	0.47	7	8	7	8	y	0.46	6	7	6	7	y	0.12	1	7	1	7	n	0.09	1	10	1	10	n	0.00	0	1	0	1	n	0.25	3	9	3	9	y	0.00	0	11	0	11	n	0.40	2	3	2	3	y	0.17	2	10	2	10	y	0.17	1	5	1	5	n	0.14	1	6	1	6	n	ENSMUSG00000037652.16	Phc3	chr3	protein_coding	polyhomeotic 3
novel_NIR_12395	chr3	31072820	31080402	+	31072820;31079368	31079279;31080402	ES	ENSMUST00000108249.9	novel	0.00	0	7.5	0	7;8	n	0.00	0	5.5	0	10;1	n	0.00	0	14.5	0	14;15	n	0.00	0	12.0	0	15;9	n	0.00	0	23.0	0	24;22	n	0.00	0	7.5	0	9;6	n	0.00	0	15.5	0	17;14	n	0.00	0	6.5	0	7;6	n	0.22	2	7.0	2	12;2	y	0.00	0	17.5	0	18;17	n	0.00	0	8.5	0	11;6	n	0.00	0	16.0	0	15;17	n	ENSMUSG00000037643.15	Prkci	chr3	protein_coding	protein kinase C, iota
novel_NIR_12396	chr3	32397583	32397697	-	32397583	32397701	A5SS	ENSMUST00000029199.11	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.04	1	23	1	23	n	0.00	0	5	0	5	n	0.00	0	29	0	29	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.30	3	7	3	7	y	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	ENSMUSG00000027663.13	Zmat3	chr3	protein_coding	zinc finger matrin type 3
novel_NIR_12397	chr3	32451115	32490279	+	32451949	32490279	5pMXE	ENSMUST00000108243.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027665.14	Pik3ca	chr3	protein_coding	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha
novel_NIR_12398	chr3	32564881	32567158	+	32564881	32567150	A3SS	ENSMUST00000191783.6	novel	0.09	1	10	1	10	n	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.25	2	6	2	6	y	0.09	2	21	2	21	n	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.17	3	15	3	15	y	0.00	0	5	0	5	n	0.08	2	24	2	24	n	ENSMUSG00000027667.14	Zfp639	chr3	protein_coding	zinc finger protein 639
novel_NIR_12399	chr3	32564881	32567158	+	32564881	32567189	A3SS	ENSMUST00000193119.6	novel	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000027667.14	Zfp639	chr3	protein_coding	zinc finger protein 639
novel_NIR_12400	chr3	32565501	32567150	+	32564738	32567150	A5SS	ENSMUST00000193287.6	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.50	2	2	2	2	y	0.00	0	5	0	5	n	ENSMUSG00000027667.14	Zfp639	chr3	protein_coding	zinc finger protein 639
novel_NIR_12401	chr3	32565501	32567150	+	32564881	32567150	A5SS	ENSMUST00000191783.6	novel	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	21	0	21	n	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.00	0	15	0	15	n	0.29	2	5	2	5	y	0.00	0	24	0	24	n	ENSMUSG00000027667.14	Zfp639	chr3	protein_coding	zinc finger protein 639
novel_NIR_12402	chr3	32565501	32567150	+	32565355	32567150	A5SS	ENSMUST00000194821.2	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	ENSMUSG00000027667.14	Zfp639	chr3	protein_coding	zinc finger protein 639
novel_NIR_12403	chr3	32565793	32567150	+	32564738	32567150	A5SS	ENSMUST00000193287.6	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.67	2	1	2	1	y	0.00	0	1	0	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000027667.14	Zfp639	chr3	protein_coding	zinc finger protein 639
novel_NIR_12404	chr3	32565793	32567150	+	32564881	32567150	A5SS	ENSMUST00000191783.6	novel	0.17	2	10	2	10	y	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.25	2	6	2	6	y	0.09	2	21	2	21	n	0.00	0	12	0	12	n	0.19	3	13	3	13	y	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.00	0	24	0	24	n	ENSMUSG00000027667.14	Zfp639	chr3	protein_coding	zinc finger protein 639
novel_NIR_12405	chr3	32565793	32567150	+	32565355	32567150	A5SS	ENSMUST00000194821.2	novel	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000027667.14	Zfp639	chr3	protein_coding	zinc finger protein 639
novel_NIR_12406	chr3	32567341	32571178	+	32567341;32568603	32568533;32571178	ES	ENSMUST00000192985.6	novel	0.00	0	24.0	0	42;6	n	0.00	0	12.0	0	22;2	n	0.00	0	26.0	0	52;0	n	0.00	0	15.0	0	29;1	n	0.03	1	28.5	1	52;5	n	0.00	0	13.5	0	27;0	n	0.00	0	19.0	0	35;3	n	0.21	3	11.5	3	19;4	y	0.00	0	15.5	0	30;1	n	0.00	0	28.0	0	48;8	n	0.00	0	23.5	0	41;6	n	0.00	0	23.0	0	42;4	n	ENSMUSG00000027667.14	Zfp639	chr3	protein_coding	zinc finger protein 639
novel_NIR_12407	chr3	32584028	32586047	+	32583709	32586047	A5SS	ENSMUST00000147350.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027668.14	Mfn1	chr3	protein_coding	mitofusin 1
novel_NIR_12408	chr3	32584028	32586047	+	32585735	32586047	5pMXE	ENSMUST00000137565.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027668.14	Mfn1	chr3	protein_coding	mitofusin 1
novel_NIR_12409	chr3	32791379	32798989	+	32791379	32799003	A3SS	ENSMUST00000029217.12	novel	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.12	1	7	1	7	n	-	-	-	-	-	-	0.20	2	8	2	8	y	-	-	-	-	-	-	0.09	1	10	1	10	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	ENSMUSG00000027673.13	Ndufb5	chr3	protein_coding	NADH:ubiquinone oxidoreductase subunit B5
novel_NIR_12410	chr3	32802716	32805185	+	32802716	32802936	3pMXE	ENSMUST00000121778.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	14	0	14	0	y	ENSMUSG00000027673.13	Ndufb5	chr3	protein_coding	NADH:ubiquinone oxidoreductase subunit B5
novel_NIR_12411	chr3	33854585	33855110	+	33854585	33854731	A3SS&ES	ENSMUST00000196139.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027677.18	Ttc14	chr3	protein_coding	tetratricopeptide repeat domain 14
novel_NIR_12412	chr3	33855539	33857224	+	33855539	33857008	3pMXE	ENSMUST00000196139.5	novel	0.04	1	22	1	22	n	0.00	0	17	0	17	n	0.00	0	44	0	44	n	0.12	3	23	3	23	n	0.04	2	47	2	47	n	0.00	0	20	0	20	n	0.00	0	30	0	30	n	0.08	2	22	2	22	n	0.03	1	29	1	29	n	0.00	0	25	0	25	n	0.18	3	14	3	14	y	0.03	1	36	1	36	n	ENSMUSG00000027677.18	Ttc14	chr3	protein_coding	tetratricopeptide repeat domain 14
novel_NIR_12413	chr3	33855539	33857224	+	33855539;33857092	33857008;33857224	ES	ENSMUST00000099153.10	novel	0.05	1	18.0	1	22;14	n	0.00	0	16.0	0	17;15	n	0.00	0	43.0	0	44;42	n	0.12	3	22.5	3	23;22	n	0.04	2	42.5	2	47;38	n	0.00	0	20.5	0	20;21	n	0.00	0	30.0	0	30;30	n	0.07	2	27.5	2	22;33	n	0.03	1	28.5	1	29;28	n	0.00	0	31.5	0	25;38	n	0.15	3	16.5	3	14;19	y	0.03	1	34.0	1	36;32	n	ENSMUSG00000027677.18	Ttc14	chr3	protein_coding	tetratricopeptide repeat domain 14
novel_NIR_12414	chr3	33861082	33862835	+	33861082	33861988	3pMXE	ENSMUST00000198529.5	novel	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.43	3	4	3	4	y	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.18	3	14	3	14	y	0.18	2	9	2	9	y	0.00	0	15	0	15	n	ENSMUSG00000027677.18	Ttc14	chr3	protein_coding	tetratricopeptide repeat domain 14
novel_NIR_12415	chr3	33861082	33862835	+	33861082;33862097	33861988;33862835	ES	ENSMUST00000117915.8	novel	0.00	0	13.5	0	15;12	n	0.00	0	7.0	0	7;7	n	0.00	0	16.0	0	14;18	n	0.00	0	12.5	0	15;10	n	0.00	0	12.5	0	12;13	n	0.33	3	6.0	3	4;8	y	0.00	0	20.0	0	10;30	n	0.00	0	16.5	0	9;24	n	0.00	0	7.0	0	7;7	n	0.15	3	16.5	3	14;19	y	0.13	2	13.0	2	9;17	n	0.00	0	20.5	0	15;26	n	ENSMUSG00000027677.18	Ttc14	chr3	protein_coding	tetratricopeptide repeat domain 14
novel_NIR_12416	chr3	33861082	33862835	+	33861082;33862097	33862005;33862835	ES	ENSMUST00000199222.5	novel	0.00	0	7.5	0	3;12	n	0.00	0	4.0	0	1;7	n	0.00	0	11.0	0	4;18	n	0.00	0	5.5	0	1;10	n	0.00	0	9.5	0	6;13	n	0.38	3	5.0	3	2;8	y	0.00	0	18.0	0	6;30	n	0.00	0	13.0	0	2;24	n	0.00	0	6.0	0	5;7	n	0.22	3	10.5	3	2;19	y	0.18	2	9.0	2	1;17	y	0.00	0	17.5	0	9;26	n	ENSMUSG00000027677.18	Ttc14	chr3	protein_coding	tetratricopeptide repeat domain 14
novel_NIR_12417	chr3	34073251	34073882	-	34072197	34073882	A3SS	ENSMUST00000200602.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000105535.2	Gm43077	chr3	lncRNA	predicted gene 43077
novel_NIR_12418	chr3	34074312	34093263	+	34074312	34095212	A3SS	ENSMUST00000167354.8	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027680.16	Fxr1	chr3	protein_coding	fragile X mental retardation gene 1, autosomal homolog
novel_NIR_12419	chr3	34134306	34134376	-	34134306	34135335	A5SS	ENSMUST00000120805.8	novel	1.00	5	0	5	0	y	1.00	7	0	7	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	0.67	4	2	4	2	y	1.00	2	0	2	0	y	0.50	3	3	3	3	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	6	0	6	0	y	ENSMUSG00000027679.14	Dnajc19	chr3	protein_coding	DnaJ heat shock protein family (Hsp40) member C19
novel_NIR_12420	chr3	34134306	34134384	-	34134306	34135335	A5SS	ENSMUST00000120805.8	novel	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.60	3	2	3	2	y	-	-	-	-	-	-	0.25	1	3	1	3	n	1.00	2	0	2	0	y	0.50	1	1	1	1	n	1.00	3	0	3	0	y	ENSMUSG00000027679.14	Dnajc19	chr3	protein_coding	DnaJ heat shock protein family (Hsp40) member C19
novel_NIR_12421	chr3	35893363	35900894	+	35893363	35895179	A3SS&ES	ENSMUST00000198599.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000037400.18	Atp11b	chr3	protein_coding	ATPase, class VI, type 11B
novel_NIR_12422	chr3	35893363	35900894	+	35893363	35897720	A3SS&ES	ENSMUST00000196409.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000037400.18	Atp11b	chr3	protein_coding	ATPase, class VI, type 11B
novel_NIR_12423	chr3	35893363	35900921	+	35893363	35895179	A3SS&ES	ENSMUST00000198599.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000037400.18	Atp11b	chr3	protein_coding	ATPase, class VI, type 11B
novel_NIR_12424	chr3	35893363	35900921	+	35893363	35897720	A3SS&ES	ENSMUST00000196409.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000037400.18	Atp11b	chr3	protein_coding	ATPase, class VI, type 11B
novel_NIR_12425	chr3	35991872	35996595	+	35991847	35996595	A5SS	ENSMUST00000122858.6	novel	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.08	1	12	1	12	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.57	4	3	4	3	y	0.00	0	9	0	9	n	ENSMUSG00000085655.6	Gm15952	chr3	lncRNA	predicted gene 15952
novel_NIR_12426	chr3	36533716	36535801	+	36533716	36535925	A3SS	ENSMUST00000029268.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027713.7	1810062G17Rik	chr3	protein_coding	RIKEN cDNA 1810062G17 gene
novel_NIR_12427	chr3	36533729	36535925	+	36533716	36535925	A5SS	ENSMUST00000029268.7	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027713.7	1810062G17Rik	chr3	protein_coding	RIKEN cDNA 1810062G17 gene
novel_NIR_12428	chr3	36535402	36535925	+	36533716	36535925	A5SS	ENSMUST00000029268.7	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000027713.7	1810062G17Rik	chr3	protein_coding	RIKEN cDNA 1810062G17 gene
novel_NIR_12429	chr3	36653542	36656978	-	36653572	36656978	A3SS	ENSMUST00000040148.11	novel	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.29	2	5	2	5	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	ENSMUSG00000037325.11	Bbs7	chr3	protein_coding	Bardet-Biedl syndrome 7 (human)
novel_NIR_12430	chr3	36660940	36661670	-	36659905	36661670	A3SS	ENSMUST00000040148.11	novel	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000037325.11	Bbs7	chr3	protein_coding	Bardet-Biedl syndrome 7 (human)
novel_NIR_12431	chr3	37044037	37048924	+	37044037	37046826	3pMXE	ENSMUST00000211820.2	novel	1.00	3	0	3	0	y	1.00	3	0	3	0	y	0.90	26	3	26	3	y	0.82	9	2	9	2	y	0.88	14	2	14	2	y	0.85	11	2	11	2	y	0.92	11	1	11	1	y	0.89	8	1	8	1	y	1.00	7	0	7	0	y	1.00	12	0	12	0	y	-	-	-	-	-	-	1.00	10	0	10	0	y	ENSMUSG00000037270.19	4932438A13Rik	chr3	protein_coding	RIKEN cDNA 4932438A13 gene
novel_NIR_12432	chr3	37044037	37048924	+	37044037;37046876	37046826;37048924	ES	ENSMUST00000057272.15	novel	1.00	3	0.0	3	0;0	y	1.00	3	0.0	3	0;0	y	0.90	26	3.0	26	3;3	y	0.86	9	1.5	9	2;1	y	0.90	14	1.5	14	2;1	y	0.88	11	1.5	11	2;1	y	0.85	11	2.0	11	1;3	y	0.89	8	1.0	8	1;1	y	0.93	7	0.5	7	0;1	y	1.00	12	0.0	12	0;0	y	-	-	-	-	-	-	1.00	10	0.0	10	0;0	y	ENSMUSG00000037270.19	4932438A13Rik	chr3	protein_coding	RIKEN cDNA 4932438A13 gene
novel_NIR_12433	chr3	37065153	37065684	+	37065153	37065717	A3SS	ENSMUST00000057272.15	novel	0.20	3	12	3	12	y	0.00	0	6	0	6	n	0.00	0	33	0	33	n	0.06	1	17	1	17	n	0.08	3	33	3	33	n	0.07	2	26	2	26	n	0.05	2	39	2	39	n	0.00	0	25	0	25	n	0.00	0	20	0	20	n	0.03	1	35	1	35	n	0.00	0	7	0	7	n	0.17	5	25	5	25	y	ENSMUSG00000037270.19	4932438A13Rik	chr3	protein_coding	RIKEN cDNA 4932438A13 gene
novel_NIR_12434	chr3	37077181	37080380	+	37076623	37080380	A5SS	ENSMUST00000138152.2	novel	0.00	0	2	0	2	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	1.00	3	0	3	0	y	ENSMUSG00000037270.19	4932438A13Rik	chr3	protein_coding	RIKEN cDNA 4932438A13 gene
novel_NIR_12435	chr3	37077181	37080380	+	37077181	37080239	A3SS	ENSMUST00000146948.8	novel	0.00	0	16	0	16	n	0.09	1	10	1	10	n	0.04	1	27	1	27	n	0.08	1	12	1	12	n	0.00	0	35	0	35	n	0.00	0	22	0	22	n	0.00	0	20	0	20	n	0.00	0	19	0	19	n	0.00	0	15	0	15	n	0.00	0	28	0	28	n	0.15	2	11	2	11	y	0.12	3	23	3	23	n	ENSMUSG00000037270.19	4932438A13Rik	chr3	protein_coding	RIKEN cDNA 4932438A13 gene
novel_NIR_12436	chr3	37086675	37087414	+	37086675	37087411	A3SS	ENSMUST00000057272.15	novel	0.04	1	22	1	22	n	0.26	9	26	9	26	y	0.08	7	77	7	77	n	0.19	9	39	9	39	y	0.13	11	73	11	73	n	0.11	4	31	4	31	n	0.13	7	46	7	46	n	0.15	6	35	6	35	y	0.05	1	20	1	20	n	0.03	1	32	1	32	n	0.03	1	36	1	36	n	0.12	5	37	5	37	n	ENSMUSG00000037270.19	4932438A13Rik	chr3	protein_coding	RIKEN cDNA 4932438A13 gene
novel_NIR_12437	chr3	37471053	37472631	-	37471053	37473491	A5SS	ENSMUST00000052645.13	novel	0.16	3	16	3	16	y	0.00	0	17	0	17	n	0.00	0	28	0	28	n	0.04	1	25	1	25	n	0.00	0	30	0	30	n	0.00	0	40	0	40	n	0.02	1	43	1	43	n	0.00	0	15	0	15	n	0.04	1	27	1	27	n	0.00	0	22	0	22	n	0.03	1	38	1	38	n	0.08	3	33	3	33	n	ENSMUSG00000050174.16	Nudt6	chr3	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 6
novel_NIR_12438	chr3	37471053	37472631	-	37471053	37473587	A5SS	ENSMUST00000138949.2	novel	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	ENSMUSG00000050174.16	Nudt6	chr3	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 6
novel_NIR_12439	chr3	37471053	37472631	-	37471053	37473972	A5SS	ENSMUST00000146324.8	novel	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	ENSMUSG00000050174.16	Nudt6	chr3	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 6
novel_NIR_12440	chr3	37694254	37696704	+	37694254;37694957	37694669;37696704	ES	ENSMUST00000038569.8	novel	0.00	0	0.5	0	0;1	n	0.00	0	1.0	0	2;0	n	0.00	0	3.0	0	4;2	n	0.00	0	0.5	0	1;0	n	0.00	0	4.0	0	1;7	n	0.00	0	1.5	0	1;2	n	1.00	3	0.0	3	0;0	y	0.00	0	0.5	0	0;1	n	-	-	-	-	-	-	0.00	0	1.5	0	1;2	n	0.00	0	0.5	0	0;1	n	0.00	0	0.5	0	1;0	n	ENSMUSG00000037211.13	Spry1	chr3	protein_coding	sprouty RTK signaling antagonist 1
novel_NIR_12441	chr3	37694254	37696704	+	37694957	37696704	A5SS&ES	ENSMUST00000108109.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000037211.13	Spry1	chr3	protein_coding	sprouty RTK signaling antagonist 1
novel_NIR_12442	chr3	40627204	40629659	+	40627204	40629656	A3SS	ENSMUST00000091186.7	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	5	0	5	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000060798.8	Intu	chr3	protein_coding	inturned planar cell polarity protein
novel_NIR_12443	chr3	40801571	40802118	+	40801571	40812291	A3SS	ENSMUST00000203919.3	novel	1.00	1	0	1	0	n	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.71	5	2	5	2	y	0.89	8	1	8	1	y	1.00	1	0	1	0	n	1.00	5	0	5	0	y	ENSMUSG00000107741.3	Gm2011	chr3	transcribed_unprocessed_pseudogene	predicted gene 2011
novel_NIR_12444	chr3	40801571	40802118	+	40801571	40859321	A3SS	ENSMUST00000108078.9	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	1.00	4	0	4	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	5	0	5	0	y	1.00	8	0	8	0	y	1.00	1	0	1	0	n	1.00	5	0	5	0	y	ENSMUSG00000037818.17	Abhd18	chr3	protein_coding	abhydrolase domain containing 18
novel_NIR_12445	chr3	40914503	40916043	+	40905385	40916043	A5SS	ENSMUST00000191872.6	novel	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	21	0	21	n	0.00	0	21	0	21	n	0.00	0	49	0	49	n	0.00	0	21	0	21	n	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.15	2	11	2	11	y	0.09	1	10	1	10	n	0.00	0	8	0	8	n	0.00	0	17	0	17	n	ENSMUSG00000025762.17	Larp1b	chr3	protein_coding	La ribonucleoprotein domain family, member 1B
novel_NIR_12446	chr3	40918577	40921808	+	40918577	40924326	A3SS	ENSMUST00000191872.6	novel	0.57	4	3	4	3	y	0.00	0	1	0	1	n	0.00	0	13	0	13	n	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000025762.17	Larp1b	chr3	protein_coding	La ribonucleoprotein domain family, member 1B
novel_NIR_12447	chr3	40931110	40978880	+	40965616	40978880	5pMXE	ENSMUST00000191882.6	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025762.17	Larp1b	chr3	protein_coding	La ribonucleoprotein domain family, member 1B
novel_NIR_12448	chr3	40931110	40978880	+	40978455	40978880	5pMXE	ENSMUST00000192456.6	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025762.17	Larp1b	chr3	protein_coding	La ribonucleoprotein domain family, member 1B
novel_NIR_12449	chr3	40935279	40978880	+	40965616	40978880	5pMXE	ENSMUST00000191882.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025762.17	Larp1b	chr3	protein_coding	La ribonucleoprotein domain family, member 1B
novel_NIR_12450	chr3	40935279	40978880	+	40978455	40978880	5pMXE	ENSMUST00000192456.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025762.17	Larp1b	chr3	protein_coding	La ribonucleoprotein domain family, member 1B
novel_NIR_12451	chr3	40970762	40978880	+	40965616	40978880	A5SS	ENSMUST00000191882.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025762.17	Larp1b	chr3	protein_coding	La ribonucleoprotein domain family, member 1B
novel_NIR_12452	chr3	40970762	40978880	+	40978455	40978880	5pMXE	ENSMUST00000192456.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025762.17	Larp1b	chr3	protein_coding	La ribonucleoprotein domain family, member 1B
novel_NIR_12453	chr3	40976895	40978880	+	40965616	40978880	A5SS	ENSMUST00000191882.6	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025762.17	Larp1b	chr3	protein_coding	La ribonucleoprotein domain family, member 1B
novel_NIR_12454	chr3	40976895	40978880	+	40978455	40978880	5pMXE	ENSMUST00000192456.6	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025762.17	Larp1b	chr3	protein_coding	La ribonucleoprotein domain family, member 1B
novel_NIR_12455	chr3	41430171	41436232	-	41432227	41436232	3pMXE	ENSMUST00000196337.2	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.60	3	2	3	2	y	0.60	3	2	3	2	y	1.00	1	0	1	0	n	0.78	7	2	7	2	y	0.50	2	2	2	2	y	1.00	1	0	1	0	n	0.00	0	7	0	7	n	0.67	4	2	4	2	y	0.50	4	4	4	4	y	ENSMUSG00000105260.2	Gm40040	chr3	lncRNA	predicted gene, 40040
novel_NIR_12456	chr3	41436879	41447523	-	41444171	41447523	3pMXE	ENSMUST00000199155.2	novel	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	0.71	5	2	5	2	y	0.80	4	1	4	1	y	1.00	10	0	10	0	y	1.00	3	0	3	0	y	1.00	6	0	6	0	y	1.00	7	0	7	0	y	0.88	7	1	7	1	y	1.00	9	0	9	0	y	ENSMUSG00000097639.3	Platr4	chr3	lncRNA	pluripotency associated transcript 4
novel_NIR_12457	chr3	41436879	41447575	-	41444171	41447575	3pMXE	ENSMUST00000181833.2	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000097639.3	Platr4	chr3	lncRNA	pluripotency associated transcript 4
novel_NIR_12458	chr3	41437570	41447523	-	41444171	41447523	3pMXE	ENSMUST00000199155.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.60	3	2	3	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000097639.3	Platr4	chr3	lncRNA	pluripotency associated transcript 4
novel_NIR_12459	chr3	41440395	41447523	-	41444171	41447523	3pMXE	ENSMUST00000199155.2	novel	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	6	0	6	0	y	0.60	3	2	3	2	y	0.67	2	1	2	1	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	6	0	6	0	y	0.75	3	1	3	1	y	1.00	4	0	4	0	y	ENSMUSG00000097639.3	Platr4	chr3	lncRNA	pluripotency associated transcript 4
novel_NIR_12460	chr3	41440395	41447575	-	41444171	41447575	3pMXE	ENSMUST00000181833.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000097639.3	Platr4	chr3	lncRNA	pluripotency associated transcript 4
novel_NIR_12461	chr3	51185110	51215471	-	51174287	51215471	A3SS	ENSMUST00000194641.6	novel	0.15	4	23	4	23	y	0.00	0	15	0	15	n	0.00	0	45	0	45	n	0.03	1	35	1	35	n	0.00	0	51	0	51	n	0.00	0	16	0	16	n	0.00	0	51	0	51	n	0.00	0	29	0	29	n	0.00	0	29	0	29	n	0.08	3	34	3	34	n	0.00	0	25	0	25	n	0.00	0	44	0	44	n	ENSMUSG00000037174.19	Elf2	chr3	protein_coding	E74-like factor 2
novel_NIR_12462	chr3	51185110	51215471	-	51201609	51215471	A3SS&ES	ENSMUST00000183463.8	novel	0.44	4	5	4	5	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000037174.19	Elf2	chr3	protein_coding	E74-like factor 2
novel_NIR_12463	chr3	51185110	51215471	-	51207306	51215471	A3SS&ES	ENSMUST00000183338.7	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.50	3	3	3	3	y	0.00	0	4	0	4	n	0.00	0	8	0	8	n	ENSMUSG00000037174.19	Elf2	chr3	protein_coding	E74-like factor 2
novel_NIR_12464	chr3	51194193	51215471	-	51174287	51215471	A3SS	ENSMUST00000194641.6	novel	0.08	2	23	2	23	n	0.00	0	15	0	15	n	0.00	0	45	0	45	n	0.10	4	35	4	35	n	0.02	1	51	1	51	n	0.00	0	16	0	16	n	0.04	2	51	2	51	n	0.03	1	29	1	29	n	0.03	1	29	1	29	n	0.00	0	34	0	34	n	0.19	6	25	6	25	y	0.12	6	44	6	44	n	ENSMUSG00000037174.19	Elf2	chr3	protein_coding	E74-like factor 2
novel_NIR_12465	chr3	51194193	51215471	-	51201609	51215471	A3SS&ES	ENSMUST00000183463.8	novel	0.29	2	5	2	5	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	4	2	4	2	y	0.25	1	3	1	3	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.20	1	4	1	4	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	6	0	6	0	y	0.86	6	1	6	1	y	ENSMUSG00000037174.19	Elf2	chr3	protein_coding	E74-like factor 2
novel_NIR_12466	chr3	51194193	51215471	-	51207306	51215471	A3SS&ES	ENSMUST00000183338.7	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.50	4	4	4	4	y	0.50	1	1	1	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.50	1	1	1	1	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.60	6	4	6	4	y	0.43	6	8	6	8	y	ENSMUSG00000037174.19	Elf2	chr3	protein_coding	E74-like factor 2
novel_NIR_12467	chr3	51354187	51355774	+	51354187	51355720	A3SS	ENSMUST00000192197.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000063273.12	Naa15	chr3	protein_coding	N(alpha)-acetyltransferase 15, NatA auxiliary subunit
novel_NIR_12468	chr3	51370569	51370685	+	51345784	51370685	A5SS	ENSMUST00000192523.6	novel	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000063273.12	Naa15	chr3	protein_coding	N(alpha)-acetyltransferase 15, NatA auxiliary subunit
novel_NIR_12469	chr3	52452348	52453552	+	52452348	52457084	A3SS	ENSMUST00000195035.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.33	3	6	3	6	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000103965.2	Gm30173	chr3	lncRNA	predicted gene, 30173
novel_NIR_12470	chr3	54600389	54600524	+	54600280	54600524	A5SS	ENSMUST00000197502.5	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.33	2	4	2	4	y	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000027751.14	Supt20	chr3	protein_coding	SPT20 SAGA complex component
novel_NIR_12471	chr3	54600389	54600524	+	54600302	54600524	A5SS	ENSMUST00000199674.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027751.14	Supt20	chr3	protein_coding	SPT20 SAGA complex component
novel_NIR_12472	chr3	54600389	54600524	+	54600315	54600524	A5SS	ENSMUST00000200024.5	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	1.00	1	0	1	0	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000027751.14	Supt20	chr3	protein_coding	SPT20 SAGA complex component
novel_NIR_12473	chr3	54600523	54602544	+	54600629	54602544	5pMXE	ENSMUST00000170552.6	novel	0.00	0	33	0	33	n	0.08	1	11	1	11	n	0.05	2	42	2	42	n	0.08	1	11	1	11	n	0.06	2	30	2	30	n	0.18	2	9	2	9	y	0.00	0	20	0	20	n	0.00	0	24	0	24	n	0.00	0	23	0	23	n	0.00	0	21	0	21	n	0.00	0	16	0	16	n	0.00	0	24	0	24	n	ENSMUSG00000027751.14	Supt20	chr3	protein_coding	SPT20 SAGA complex component
novel_NIR_12474	chr3	54600629	54602549	+	54600834	54602549	A5SS	ENSMUST00000199655.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027751.14	Supt20	chr3	protein_coding	SPT20 SAGA complex component
novel_NIR_12475	chr3	54623110	54624760	+	54623110	54624059	A3SS	ENSMUST00000199674.5	novel	0.18	2	9	2	9	y	0.00	0	14	0	14	n	0.48	15	16	15	16	y	0.24	5	16	5	16	y	0.37	11	19	11	19	y	0.08	1	11	1	11	n	0.30	6	14	6	14	y	0.23	3	10	3	10	y	0.00	0	5	0	5	n	0.23	3	10	3	10	y	0.11	1	8	1	8	n	0.21	4	15	4	15	y	ENSMUSG00000027751.14	Supt20	chr3	protein_coding	SPT20 SAGA complex component
novel_NIR_12476	chr3	54623110	54624760	+	54623110	54624997	A3SS	ENSMUST00000197502.5	novel	0.33	2	4	2	4	y	0.00	0	1	0	1	n	0.83	15	3	15	3	y	0.71	5	2	5	2	y	0.73	11	4	11	4	y	1.00	1	0	1	0	n	0.86	6	1	6	1	y	0.60	3	2	3	2	y	0.00	0	1	0	1	n	0.50	3	3	3	3	y	0.50	1	1	1	1	n	0.80	4	1	4	1	y	ENSMUSG00000027751.14	Supt20	chr3	protein_coding	SPT20 SAGA complex component
novel_NIR_12477	chr3	54627882	54629975	+	54627882	54629942	A3SS	ENSMUST00000197502.5	novel	0.14	2	12	2	12	n	0.05	1	19	1	19	n	0.21	3	11	3	11	y	0.00	0	15	0	15	n	0.27	6	16	6	16	y	0.46	6	7	6	7	y	0.32	6	13	6	13	y	0.00	0	13	0	13	n	0.12	2	14	2	14	n	0.05	1	21	1	21	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	ENSMUSG00000027751.14	Supt20	chr3	protein_coding	SPT20 SAGA complex component
novel_NIR_12478	chr3	54627882	54629975	+	54627882	54629978	A3SS	ENSMUST00000029315.13	novel	0.13	2	13	2	13	n	0.25	1	3	1	3	n	0.19	3	13	3	13	y	0.00	0	8	0	8	n	0.35	6	11	6	11	y	0.43	6	8	6	8	y	0.40	6	9	6	9	y	0.00	0	3	0	3	n	0.25	2	6	2	6	y	0.09	1	10	1	10	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	ENSMUSG00000027751.14	Supt20	chr3	protein_coding	SPT20 SAGA complex component
novel_NIR_12479	chr3	54627882	54629975	+	54627882	54633391	A3SS	ENSMUST00000199674.5	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	6	0	6	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027751.14	Supt20	chr3	protein_coding	SPT20 SAGA complex component
novel_NIR_12480	chr3	54712883	54714620	-	54713259	54714620	3pMXE	ENSMUST00000182084.2	novel	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000036615.8	Rfxap	chr3	protein_coding	regulatory factor X-associated protein
novel_NIR_12481	chr3	55019912;55022991	55022903;55024405	+	55019912	55024405	cassetteExon	ENSMUST00000118118.8	novel	0.33	1.5	3	0;3	3	n	0.25	1.0	3	0;2	3	n	0.32	12.0	26	4;20	26	y	0.09	0.5	5	0;1	5	n	0.41	5.5	8	5;6	8	y	0.07	2.0	27	0;4	27	n	0.19	3.5	15	2;5	15	y	0.21	5.0	19	0;10	19	n	0.64	3.5	2	0;7	2	n	0.16	1.5	8	0;3	8	n	0.33	1.0	2	0;2	2	n	0.00	0.0	2	0;0	2	n	ENSMUSG00000036580.16	Spg20	chr3	protein_coding	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)
novel_NIR_12482	chr3	55022991	55024405	+	55019638	55024405	A5SS	ENSMUST00000044116.14	novel	0.12	3	21	3	21	n	0.12	2	15	2	15	n	0.21	20	74	20	74	n	0.03	1	28	1	28	n	0.09	6	58	6	58	n	0.07	4	54	4	54	n	0.09	5	50	5	50	n	0.24	10	31	10	31	y	0.27	7	19	7	19	y	0.10	3	28	3	28	n	0.10	2	19	2	19	n	0.00	0	27	0	27	n	ENSMUSG00000036580.16	Spg20	chr3	protein_coding	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)
novel_NIR_12483	chr3	55022991	55024405	+	55019912	55024405	A5SS	ENSMUST00000118118.8	novel	0.50	3	3	3	3	y	0.40	2	3	2	3	y	0.43	20	26	20	26	n	0.17	1	5	1	5	n	0.43	6	8	6	8	n	0.13	4	27	4	27	n	0.25	5	15	5	15	n	0.34	10	19	10	19	y	0.78	7	2	7	2	y	0.27	3	8	3	8	y	0.50	2	2	2	2	y	0.00	0	2	0	2	n	ENSMUSG00000036580.16	Spg20	chr3	protein_coding	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)
novel_NIR_12484	chr3	55022991	55024405	+	55020106	55024405	A5SS	ENSMUST00000149767.2	novel	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	20	0	20	0	y	1.00	1	0	1	0	n	1.00	6	0	6	0	y	1.00	4	0	4	0	y	1.00	5	0	5	0	y	1.00	10	0	10	0	y	1.00	7	0	7	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000036580.16	Spg20	chr3	protein_coding	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)
novel_NIR_12485	chr3	55022991	55024405	+	55023720	55024405	5pMXE	ENSMUST00000146109.2	novel	1.00	3	0	3	0	y	1.00	2	0	2	0	y	0.83	20	4	20	4	y	1.00	1	0	1	0	n	0.75	6	2	6	2	y	1.00	4	0	4	0	y	1.00	5	0	5	0	y	1.00	10	0	10	0	y	1.00	7	0	7	0	y	0.60	3	2	3	2	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000036580.16	Spg20	chr3	protein_coding	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)
novel_NIR_12486	chr3	55554954	55557099	-	55554969	55557099	A3SS	ENSMUST00000029374.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027799.13	Nbea	chr3	protein_coding	neurobeachin
novel_NIR_12487	chr3	55860583	55862778	-	55860583	55862760	A5SS	ENSMUST00000029374.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027799.13	Nbea	chr3	protein_coding	neurobeachin
novel_NIR_12488	chr3	55899935	55907908	-	55899935;55901477	55901469;55907908	ES	ENSMUST00000029374.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0.0	3	0;0	y	0.00	0	1.0	0	1;1	n	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2.0	0	2;2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027799.13	Nbea	chr3	protein_coding	neurobeachin
novel_NIR_12489	chr3	5628789	5640709	-	5628789	5630193	A5SS&ES	ENSMUST00000165309.8	novel	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.21	3	11	3	11	y	0.10	2	19	2	19	n	0.07	2	25	2	25	n	0.25	1	3	1	3	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	17	0	17	n	0.00	0	6	0	6	n	0.07	1	13	1	13	n	ENSMUSG00000040374.14	Pex2	chr3	protein_coding	peroxisomal biogenesis factor 2
novel_NIR_12490	chr3	5628789	5640709	-	5628789	5635547	A5SS&ES	ENSMUST00000164828.8	novel	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.25	3	9	3	9	y	0.14	2	12	2	12	n	0.07	2	26	2	26	n	0.06	1	16	1	16	n	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.08	1	12	1	12	n	ENSMUSG00000040374.14	Pex2	chr3	protein_coding	peroxisomal biogenesis factor 2
novel_NIR_12491	chr3	5630258	5635547	-	5628789	5635547	A3SS	ENSMUST00000164828.8	novel	0.18	2	9	2	9	y	0.06	1	15	1	15	n	0.10	1	9	1	9	n	0.43	9	12	9	12	y	0.28	10	26	10	26	y	0.00	0	16	0	16	n	0.35	8	15	8	15	y	0.13	2	13	2	13	n	0.31	4	9	4	9	n	0.11	2	17	2	17	n	0.29	4	10	4	10	y	0.29	5	12	5	12	y	ENSMUSG00000040374.14	Pex2	chr3	protein_coding	peroxisomal biogenesis factor 2
novel_NIR_12492	chr3	5630258	5635547	-	5630258	5641098	A5SS	ENSMUST00000165309.8	novel	0.67	2	1	2	1	y	0.17	1	5	1	5	n	0.11	1	8	1	8	n	0.35	9	17	9	17	y	0.56	10	8	10	8	y	0.00	0	1	0	1	n	0.53	8	7	8	7	y	0.18	2	9	2	9	y	0.50	4	4	4	4	y	0.33	2	4	2	4	y	0.57	4	3	4	3	y	0.71	5	2	5	2	y	ENSMUSG00000040374.14	Pex2	chr3	protein_coding	peroxisomal biogenesis factor 2
novel_NIR_12493	chr3	5630258	5640709	-	5630258	5641098	A5SS	ENSMUST00000165309.8	novel	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.06	1	17	1	17	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.33	1	2	1	2	n	ENSMUSG00000040374.14	Pex2	chr3	protein_coding	peroxisomal biogenesis factor 2
novel_NIR_12494	chr3	5635689	5640709	-	5635689	5641098	A5SS	ENSMUST00000164828.8	novel	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.16	3	16	3	16	y	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.04	1	24	1	24	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.00	0	13	0	13	n	0.00	0	15	0	15	n	ENSMUSG00000040374.14	Pex2	chr3	protein_coding	peroxisomal biogenesis factor 2
novel_NIR_12495	chr3	57200523	57217679	-	57200523	57201879	5pMXE	ENSMUST00000198030.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027800.15	Tm4sf1	chr3	protein_coding	transmembrane 4 superfamily member 1
novel_NIR_12496	chr3	57200523	57295077	-	57200523	57201879	5pMXE	ENSMUST00000198030.2	novel	1.00	4	0	4	0	y	1.00	10	0	10	0	y	0.00	0	1	0	1	n	1.00	4	0	4	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	7	0	7	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000027800.15	Tm4sf1	chr3	protein_coding	transmembrane 4 superfamily member 1
novel_NIR_12497	chr3	57200523	57295077	-	57200523	57202033	5pMXE	ENSMUST00000171384.8	novel	0.10	4	35	4	35	n	0.20	10	41	10	41	y	0.00	0	10	0	10	n	0.08	4	46	4	46	n	0.11	6	49	6	49	n	0.00	0	8	0	8	n	0.00	0	58	0	58	n	0.00	0	18	0	18	n	0.00	0	34	0	34	n	0.11	7	54	7	54	n	0.02	1	49	1	49	n	0.01	1	73	1	73	n	ENSMUSG00000027800.15	Tm4sf1	chr3	protein_coding	transmembrane 4 superfamily member 1
novel_NIR_12498	chr3	57202503	57214086	-	57202503	57209149	5pMXE	ENSMUST00000029376.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027800.15	Tm4sf1	chr3	protein_coding	transmembrane 4 superfamily member 1
novel_NIR_12499	chr3	57202503	57217679	-	57202503	57209149	5pMXE	ENSMUST00000029376.13	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000027800.15	Tm4sf1	chr3	protein_coding	transmembrane 4 superfamily member 1
novel_NIR_12500	chr3	57202503	57295077	-	57202503	57209149	5pMXE	ENSMUST00000029376.13	novel	1.00	9	0	9	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	8	0	8	0	y	0.89	8	1	8	1	y	-	-	-	-	-	-	1.00	12	0	12	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	8	0	8	0	y	1.00	6	0	6	0	y	1.00	8	0	8	0	y	ENSMUSG00000027800.15	Tm4sf1	chr3	protein_coding	transmembrane 4 superfamily member 1
novel_NIR_12501	chr3	57209057	57217679	-	57209057	57209149	5pMXE	ENSMUST00000196979.5	novel	0.75	3	1	3	1	y	0.67	2	1	2	1	y	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.83	5	1	5	1	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	ENSMUSG00000027800.15	Tm4sf1	chr3	protein_coding	transmembrane 4 superfamily member 1
novel_NIR_12502	chr3	57209057	57218785	-	57209057	57209149	5pMXE	ENSMUST00000196979.5	novel	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.40	2	3	2	3	y	0.00	0	4	0	4	n	-	-	-	-	-	-	ENSMUSG00000027800.15	Tm4sf1	chr3	protein_coding	transmembrane 4 superfamily member 1
novel_NIR_12503	chr3	57643621	57655312	+	57643621	57740994	A3SS	ENSMUST00000197920.5	novel	1.00	9	0	9	0	y	1.00	11	0	11	0	y	1.00	17	0	17	0	y	1.00	21	0	21	0	y	1.00	22	0	22	0	y	1.00	15	0	15	0	y	1.00	17	0	17	0	y	1.00	7	0	7	0	y	1.00	5	0	5	0	y	1.00	27	0	27	0	y	1.00	3	0	3	0	y	1.00	14	0	14	0	y	ENSMUSG00000036503.14	Rnf13	chr3	protein_coding	ring finger protein 13
novel_NIR_12504	chr3	57643621;57655455	57655312;57671678	+	57643621;57671364	57671299;57671678	MXE	ENSMUST00000200600.5	novel	1.00	15.0	0.0	9;21	0;0	y	1.00	10.5	0.0	11;10	0;0	y	1.00	20.5	0.0	17;24	0;0	y	0.98	24.0	0.5	21;27	0;1	y	1.00	23.5	0.0	22;25	0;0	y	1.00	15.5	0.0	15;16	0;0	y	1.00	20.5	0.0	17;24	0;0	y	1.00	15.5	0.0	7;24	0;0	y	1.00	14.5	0.0	5;24	0;0	y	1.00	25.5	0.0	27;24	0;0	y	1.00	12.0	0.0	3;21	0;0	y	1.00	22.5	0.0	14;31	0;0	y	ENSMUSG00000036503.14	Rnf13	chr3	protein_coding	ring finger protein 13
novel_NIR_12505	chr3	57655455	57671678	+	57643530	57671678	A5SS	ENSMUST00000198510.5	novel	1.00	21	0	21	0	y	1.00	10	0	10	0	y	1.00	24	0	24	0	y	1.00	27	0	27	0	y	1.00	25	0	25	0	y	1.00	16	0	16	0	y	1.00	24	0	24	0	y	1.00	24	0	24	0	y	1.00	24	0	24	0	y	1.00	24	0	24	0	y	1.00	21	0	21	0	y	1.00	31	0	31	0	y	ENSMUSG00000036503.14	Rnf13	chr3	protein_coding	ring finger protein 13
novel_NIR_12506	chr3	57671803	57671988	+	57671803	57686804	A3SS	ENSMUST00000198249.5	novel	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000036503.14	Rnf13	chr3	protein_coding	ring finger protein 13
novel_NIR_12507	chr3	57703716	57709139	+	57703706	57709139	A5SS	ENSMUST00000197205.5	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000036503.14	Rnf13	chr3	protein_coding	ring finger protein 13
novel_NIR_12508	chr3	57728021	57737453	+	57728021	57732523	3pMXE	ENSMUST00000198214.5	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	3	3	3	3	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000036503.14	Rnf13	chr3	protein_coding	ring finger protein 13
novel_NIR_12509	chr3	57728021	57740372	+	57728021	57732523	3pMXE	ENSMUST00000198214.5	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.75	3	1	3	1	y	0.75	3	1	3	1	y	0.40	2	3	2	3	y	0.62	5	3	5	3	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	5	0	5	0	y	ENSMUSG00000036503.14	Rnf13	chr3	protein_coding	ring finger protein 13
novel_NIR_12510	chr3	57728021	57740388	+	57728021	57732523	3pMXE	ENSMUST00000198214.5	novel	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036503.14	Rnf13	chr3	protein_coding	ring finger protein 13
novel_NIR_12511	chr3	57740465	57741072	+	57740465	57740994	A3SS	ENSMUST00000200497.5	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.40	2	3	2	3	y	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000036503.14	Rnf13	chr3	protein_coding	ring finger protein 13
novel_NIR_12512	chr3	57750468	57752595	-	57750735	57752595	A3SS	ENSMUST00000066882.10	novel	0.36	4	7	4	7	y	0.18	2	9	2	9	y	0.10	3	26	3	26	n	0.50	4	4	4	4	y	0.21	3	11	3	11	y	0.12	3	23	3	23	n	0.12	4	30	4	30	n	0.20	4	16	4	16	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.50	3	3	3	3	y	0.44	4	5	4	5	y	ENSMUSG00000027805.17	Pfn2	chr3	protein_coding	profilin 2
novel_NIR_12513	chr3	58325034	58344738	+	58325034	58335649	A3SS&ES	ENSMUST00000099090.7	novel	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.14	2	12	2	12	n	-	-	-	-	-	-	0.67	4	2	4	2	y	0.00	0	1	0	1	n	0.14	1	6	1	6	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	ENSMUSG00000027806.10	Tsc22d2	chr3	protein_coding	TSC22 domain family, member 2
novel_NIR_12514	chr3	58325034	58344738	+	58325034;58335720	58335649;58344738	ES	ENSMUST00000196049.2	novel	0.33	1	2.0	1	4;0	n	0.00	0	0.5	0	1;0	n	0.25	2	6.0	2	12;0	y	-	-	-	-	-	-	0.80	4	1.0	4	2;0	y	0.00	0	0.5	0	1;0	n	0.25	1	3.0	1	6;0	n	0.50	1	1.0	1	2;0	n	0.00	0	0.5	0	0;1	n	0.00	0	1.0	0	2;0	n	0.00	0	4.5	0	9;0	n	0.00	0	2.5	0	5;0	n	ENSMUSG00000027806.10	Tsc22d2	chr3	protein_coding	TSC22 domain family, member 2
novel_NIR_12515	chr3	58583864	58598196	-	58583864	58592971	5pMXE	ENSMUST00000145032.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	ENSMUSG00000036432.9	Siah2	chr3	protein_coding	siah E3 ubiquitin protein ligase 2
novel_NIR_12516	chr3	58598514	58603475	+	58600042	58603475	5pMXE	ENSMUST00000203879.3	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000097725.5	4930593A02Rik	chr3	lncRNA	RIKEN cDNA 4930593A02 gene
novel_NIR_12517	chr3	58603547	58613392	+	58603547	58640251	A3SS	ENSMUST00000203879.3	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000097725.5	4930593A02Rik	chr3	lncRNA	RIKEN cDNA 4930593A02 gene
novel_NIR_12518	chr3	59941274	59943232	+	59933646	59943232	A5SS	ENSMUST00000194896.2	novel	1.00	8	0	8	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	9	0	9	0	y	1.00	9	0	9	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	6	0	6	0	y	1.00	6	0	6	0	y	ENSMUSG00000027761.5	Aadac	chr3	protein_coding	arylacetamide deacetylase
novel_NIR_12519	chr3	60408232	60408402	+	60380594	60408402	A5SS	ENSMUST00000195001.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000027763.14	Mbnl1	chr3	protein_coding	muscleblind like splicing factor 1
novel_NIR_12520	chr3	60437225	60454367	+	60408515	60454367	A5SS	ENSMUST00000192086.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000027763.14	Mbnl1	chr3	protein_coding	muscleblind like splicing factor 1
novel_NIR_12521	chr3	60437225	60454367	+	60408844	60454367	A5SS	ENSMUST00000194003.6	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000027763.14	Mbnl1	chr3	protein_coding	muscleblind like splicing factor 1
novel_NIR_12522	chr3	60454915	60503015	+	60380594	60503015	A5SS	ENSMUST00000195724.6	novel	0.43	3	4	3	4	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	ENSMUSG00000027763.14	Mbnl1	chr3	protein_coding	muscleblind like splicing factor 1
novel_NIR_12523	chr3	60454915	60503015	+	60408515	60503015	A5SS	ENSMUST00000195001.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000027763.14	Mbnl1	chr3	protein_coding	muscleblind like splicing factor 1
novel_NIR_12524	chr3	60454915	60503015	+	60408844	60503015	A5SS	ENSMUST00000191747.6	novel	0.43	3	4	3	4	y	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	ENSMUSG00000027763.14	Mbnl1	chr3	protein_coding	muscleblind like splicing factor 1
novel_NIR_12525	chr3	60454915	60503015	+	60436399	60503015	A5SS	ENSMUST00000192637.2	novel	0.75	3	1	3	1	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027763.14	Mbnl1	chr3	protein_coding	muscleblind like splicing factor 1
novel_NIR_12526	chr3	60523194	60536395	+	60523194	60528844	3pMXE	ENSMUST00000193647.6	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.29	2	5	2	5	y	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	ENSMUSG00000027763.14	Mbnl1	chr3	protein_coding	muscleblind like splicing factor 1
novel_NIR_12527	chr3	60911783	60914595	+	60912020	60914595	A5SS	ENSMUST00000193201.2	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000027765.7	P2ry1	chr3	protein_coding	purinergic receptor P2Y, G-protein coupled 1
novel_NIR_12528	chr3	63832902	63834671	-	63832902	63834685	A5SS	ENSMUST00000061706.7	novel	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	20	0	20	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.00	0	12	0	12	n	0.50	2	2	2	2	y	0.00	0	21	0	21	n	0.00	0	15	0	15	n	0.00	0	13	0	13	n	ENSMUSG00000048581.13	E130311K13Rik	chr3	protein_coding	RIKEN cDNA E130311K13 gene
novel_NIR_12529	chr3	63871997	63874688	+	63872329	63874688	A5SS	ENSMUST00000181653.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	ENSMUSG00000097724.3	Gm26850	chr3	lncRNA	predicted gene, 26850
novel_NIR_12530	chr3	65856158	65857901	-	65857647	65857901	A3SS&ES	ENSMUST00000154585.8	novel	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.17	2	10	2	10	y	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.12	1	7	1	7	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	ENSMUSG00000027829.16	Ccnl1	chr3	protein_coding	cyclin L1
novel_NIR_12531	chr3	68838318	68847419	-	68838318;68843254	68843180;68847419	ES	ENSMUST00000107812.8	novel	0.00	0	5.0	0	5;5	n	0.00	0	2.0	0	2;2	n	0.20	2	8.0	2	10;6	y	0.00	0	2.5	0	3;2	n	0.00	0	10.0	0	10;10	n	0.00	0	2.5	0	2;3	n	0.00	0	2.0	0	2;2	n	0.00	0	5.0	0	4;6	n	0.00	0	2.5	0	2;3	n	0.00	0	4.0	0	3;5	n	0.00	0	3.0	0	6;0	n	0.00	0	6.5	0	4;9	n	ENSMUSG00000027778.16	Ift80	chr3	protein_coding	intraflagellar transport 80
novel_NIR_12532	chr3	68892816	68898075	-	68892816;68895327	68895217;68898075	ES	ENSMUST00000107812.8	novel	0.00	0	6.0	0	6;6	n	0.00	0	2.5	0	5;0	n	0.00	0	1.5	0	2;1	n	0.00	0	4.0	0	3;5	n	0.00	0	6.0	0	5;7	n	0.00	0	5.5	0	5;6	n	0.00	0	2.5	0	3;2	n	0.00	0	3.5	0	1;6	n	0.00	0	1.5	0	1;2	n	0.43	3	4.0	3	4;4	y	0.00	0	3.0	0	3;3	n	0.00	0	4.5	0	5;4	n	ENSMUSG00000027778.16	Ift80	chr3	protein_coding	intraflagellar transport 80
novel_NIR_12533	chr3	69629455;69631724	69631590;69636671	+	69629455;69629799	69629742;69636671	MXE	ENSMUST00000143041.8	novel	0.00	0.0	19.0	0;0	36;2	n	0.00	0.0	14.0	0;0	27;1	n	0.15	4.0	22.0	1;7	44;0	n	0.03	0.5	16.5	0;1	33;0	n	0.00	0.0	30.0	0;0	60;0	n	0.23	2.5	8.5	2;3	17;0	y	0.06	1.5	23.5	0;3	45;2	n	0.11	1.5	12.0	0;3	24;0	n	0.00	0.0	14.5	0;0	29;0	n	0.02	0.5	23.5	0;1	39;8	n	0.15	2.0	11.5	0;4	21;2	n	0.09	2.5	26.5	0;5	48;5	n	ENSMUSG00000027787.15	Nmd3	chr3	protein_coding	NMD3 ribosome export adaptor
novel_NIR_12534	chr3	69631724	69636671	+	69629799	69636671	A5SS	ENSMUST00000143041.8	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	7	0	7	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	n	0.60	3	2	3	2	y	1.00	3	0	3	0	y	-	-	-	-	-	-	0.11	1	8	1	8	n	0.67	4	2	4	2	y	0.50	5	5	5	5	y	ENSMUSG00000027787.15	Nmd3	chr3	protein_coding	NMD3 ribosome export adaptor
novel_NIR_12535	chr3	73609456	73615468	-	73613927	73615468	A3SS&ES	ENSMUST00000138216.8	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.22	2	7	2	7	y	ENSMUSG00000027792.12	Bche	chr3	protein_coding	butyrylcholinesterase
novel_NIR_12536	chr3	75448685	75449713	-	75448685	75458997	A5SS	ENSMUST00000162138.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027835.12	Pdcd10	chr3	protein_coding	programmed cell death 10
novel_NIR_12537	chr3	78988592	78990506	-	78988592;78989954	78989931;78990506	ES	ENSMUST00000118100.8	novel	0.96	13	0.5	13	1;0	y	0.91	5	0.5	5	1;0	y	0.48	14	15.0	14	16;14	y	0.68	14	6.5	14	7;6	y	0.77	12	3.5	12	4;3	y	0.89	8	1.0	8	0;2	y	0.79	11	3.0	11	3;3	y	0.64	7	4.0	7	4;4	y	0.67	6	3.0	6	2;4	y	0.85	11	2.0	11	2;2	y	0.87	10	1.5	10	2;1	y	0.74	13	4.5	13	5;4	y	ENSMUSG00000062232.15	Rapgef2	chr3	protein_coding	Rap guanine nucleotide exchange factor (GEF) 2
novel_NIR_12538	chr3	79019609	79080215	-	79019609	79052163	5pMXE	ENSMUST00000118100.8	novel	1.00	12	0	12	0	y	1.00	1	0	1	0	n	1.00	14	0	14	0	y	1.00	5	0	5	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	7	0	7	0	y	ENSMUSG00000062232.15	Rapgef2	chr3	protein_coding	Rap guanine nucleotide exchange factor (GEF) 2
novel_NIR_12539	chr3	79019609	79080215	-	79019609	79053078	5pMXE	ENSMUST00000118340.7	novel	1.00	12	0	12	0	y	1.00	1	0	1	0	n	1.00	14	0	14	0	y	1.00	5	0	5	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	7	0	7	0	y	ENSMUSG00000062232.15	Rapgef2	chr3	protein_coding	Rap guanine nucleotide exchange factor (GEF) 2
novel_NIR_12540	chr3	79019609	79080215	-	79019609;79077063	79077046;79080215	ES	ENSMUST00000195708.2	novel	1.00	12	0.0	12	0;0	y	0.33	1	2.0	1	1;3	n	0.65	14	7.5	14	8;7	y	0.62	5	3.0	5	3;3	y	0.36	2	3.5	2	3;4	y	0.00	0	3.5	0	4;3	n	0.67	2	1.0	2	0;2	y	0.50	5	5.0	5	4;6	y	0.71	6	2.5	6	2;3	y	0.00	0	3.0	0	3;3	n	0.44	2	2.5	2	2;3	y	0.82	7	1.5	7	1;2	y	ENSMUSG00000062232.15	Rapgef2	chr3	protein_coding	Rap guanine nucleotide exchange factor (GEF) 2
novel_NIR_12541	chr3	79194772	79195037	+	79194632	79195037	A5SS	ENSMUST00000192648.2	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.17	1	5	1	5	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000102545.2	6430573P05Rik	chr3	lncRNA	RIKEN cDNA 6430573P05 gene
novel_NIR_12542	chr3	79194957	79195037	+	79194632	79195037	A5SS	ENSMUST00000192648.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	3	6	3	6	y	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000102545.2	6430573P05Rik	chr3	lncRNA	RIKEN cDNA 6430573P05 gene
novel_NIR_12543	chr3	79195174	79195686	+	79195116	79195686	A5SS	ENSMUST00000192562.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.29	2	5	2	5	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000102545.2	6430573P05Rik	chr3	lncRNA	RIKEN cDNA 6430573P05 gene
novel_NIR_12544	chr3	79281966	79312989	+	79244065	79312989	A5SS	ENSMUST00000195157.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	11	0	11	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000091685.7	Gm17359	chr3	protein_coding	predicted gene, 17359
novel_NIR_12545	chr3	79281966	79312989	+	79252847	79312989	A5SS	ENSMUST00000164216.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	11	0	11	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000091685.7	Gm17359	chr3	protein_coding	predicted gene, 17359
novel_NIR_12546	chr3	79408594	79413514	-	79411820	79413514	3pMXE	ENSMUST00000130613.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000061175.13	Fnip2	chr3	protein_coding	folliculin interacting protein 2
novel_NIR_12547	chr3	79419905	79425372	-	79419905	79422410	5pMXE	ENSMUST00000130613.2	novel	0.00	0	4	0	4	n	0.50	3	3	3	3	y	0.06	1	15	1	15	n	0.00	0	12	0	12	n	0.12	1	7	1	7	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	ENSMUSG00000061175.13	Fnip2	chr3	protein_coding	folliculin interacting protein 2
novel_NIR_12548	chr3	79419905	79425372	-	79419905;79422556	79422410;79425372	ES	ENSMUST00000133154.7	novel	0.00	0	5.5	0	4;7	n	0.55	3	2.5	3	3;2	y	0.09	1	10.0	1	15;5	n	0.00	0	11.0	0	12;10	n	0.11	1	8.0	1	7;9	n	0.00	0	1.0	0	0;2	n	0.00	0	5.0	0	6;4	n	0.00	0	5.0	0	6;4	n	0.00	0	7.0	0	6;8	n	0.00	0	11.0	0	10;12	n	0.00	0	6.0	0	7;5	n	0.00	0	11.5	0	14;9	n	ENSMUSG00000061175.13	Fnip2	chr3	protein_coding	folliculin interacting protein 2
novel_NIR_12549	chr3	79530985	79535522	-	79530985	79535788	A5SS	ENSMUST00000120992.8	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.55	6	5	6	5	y	0.71	5	2	5	2	y	1.00	8	0	8	0	y	0.33	3	6	3	6	y	0.33	1	2	1	2	n	1.00	6	0	6	0	y	0.50	2	2	2	2	y	0.33	2	4	2	4	y	0.57	4	3	4	3	y	0.33	1	2	1	2	n	ENSMUSG00000027809.15	Etfdh	chr3	protein_coding	electron transferring flavoprotein, dehydrogenase
novel_NIR_12550	chr3	79728736	79729938	-	79728662	79729938	A3SS	ENSMUST00000029568.7	novel	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.12	1	7	1	7	n	0.40	2	3	2	3	y	0.06	1	17	1	17	n	0.29	2	5	2	5	y	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.11	1	8	1	8	n	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.00	0	16	0	16	n	ENSMUSG00000027956.12	Tmem144	chr3	protein_coding	transmembrane protein 144
novel_NIR_12551	chr3	79746613	79750078	-	79746613	79748854	5pMXE	ENSMUST00000168038.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	0.67	2	1	2	1	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	ENSMUSG00000027956.12	Tmem144	chr3	protein_coding	transmembrane protein 144
novel_NIR_12552	chr3	79746613	79750078	-	79746613	79749695	5pMXE	ENSMUST00000029568.7	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	1.00	5	0	5	0	y	0.67	2	1	2	1	y	0.33	1	2	1	2	n	0.57	4	3	4	3	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	1.00	7	0	7	0	y	ENSMUSG00000027956.12	Tmem144	chr3	protein_coding	transmembrane protein 144
novel_NIR_12553	chr3	79746613	79750078	-	79746613	79759301	A5SS	ENSMUST00000193410.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	ENSMUSG00000027956.12	Tmem144	chr3	protein_coding	transmembrane protein 144
novel_NIR_12554	chr3	79746613	79750078	-	79746613	79760001	A5SS	ENSMUST00000192341.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	ENSMUSG00000027956.12	Tmem144	chr3	protein_coding	transmembrane protein 144
novel_NIR_12555	chr3	79746613	79750078	-	79746613;79749145	79748974;79750078	ES	ENSMUST00000194338.2	novel	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	0.00	0	1.5	0	1;2	n	0.77	5	1.5	5	0;3	y	0.67	2	1.0	2	0;2	y	1.00	1	0.0	1	0;0	n	0.89	4	0.5	4	0;1	y	0.00	0	1.0	0	0;2	n	0.00	0	0.5	0	1;0	n	0.67	2	1.0	2	2;0	y	0.00	0	0.5	0	0;1	n	1.00	7	0.0	7	0;0	y	ENSMUSG00000027956.12	Tmem144	chr3	protein_coding	transmembrane protein 144
novel_NIR_12556	chr3	81882736	81882971	-	81882736	81883080	A5SS	ENSMUST00000193879.2	novel	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.44	4	5	4	5	y	0.00	0	5	0	5	n	0.20	3	12	3	12	y	0.25	2	6	2	6	y	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.07	1	14	1	14	n	0.00	0	9	0	9	n	ENSMUSG00000028011.17	Tdo2	chr3	protein_coding	tryptophan 2,3-dioxygenase
novel_NIR_12557	chr3	81882736	81882973	-	81882736	81883080	A5SS	ENSMUST00000193879.2	novel	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.18	2	9	2	9	y	ENSMUSG00000028011.17	Tdo2	chr3	protein_coding	tryptophan 2,3-dioxygenase
novel_NIR_12558	chr3	81882736	81884569	-	81882736	81883080	5pMXE	ENSMUST00000193879.2	novel	0.11	1	8	1	8	n	0.00	0	4	0	4	n	0.29	2	5	2	5	y	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.18	2	9	2	9	y	ENSMUSG00000028011.17	Tdo2	chr3	protein_coding	tryptophan 2,3-dioxygenase
novel_NIR_12559	chr3	81882736	81897299	-	81882736	81883080	5pMXE	ENSMUST00000193879.2	novel	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.14	2	12	2	12	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.38	3	5	3	5	y	0.43	3	4	3	4	y	0.21	3	11	3	11	y	0.12	2	14	2	14	n	0.25	3	9	3	9	y	ENSMUSG00000028011.17	Tdo2	chr3	protein_coding	tryptophan 2,3-dioxygenase
novel_NIR_12560	chr3	81897349	81897768	+	81889740	81897768	A5SS	ENSMUST00000142889.2	novel	0.29	2	5	2	5	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.14	2	12	2	12	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000028008.11	Asic5	chr3	protein_coding	acid-sensing (proton-gated) ion channel family member 5
novel_NIR_12561	chr3	81897353	81897768	+	81889740	81897768	A5SS	ENSMUST00000142889.2	novel	0.55	6	5	6	5	y	0.92	12	1	12	1	y	1.00	5	0	5	0	y	0.90	18	2	18	2	y	0.45	10	12	10	12	y	1.00	13	0	13	0	y	0.71	12	5	12	5	y	1.00	16	0	16	0	y	1.00	8	0	8	0	y	0.75	12	4	12	4	y	0.86	12	2	12	2	y	0.67	8	4	8	4	y	ENSMUSG00000028008.11	Asic5	chr3	protein_coding	acid-sensing (proton-gated) ion channel family member 5
novel_NIR_12562	chr3	81897862	81898948	+	81897862	81904098	A3SS	ENSMUST00000142889.2	novel	1.00	4	0	4	0	y	0.78	7	2	7	2	y	1.00	7	0	7	0	y	0.83	10	2	10	2	y	0.69	9	4	9	4	y	0.60	3	2	3	2	y	0.77	10	3	10	3	y	0.69	11	5	11	5	y	0.40	2	3	2	3	y	0.84	21	4	21	4	y	0.71	12	5	12	5	y	0.85	17	3	17	3	y	ENSMUSG00000028008.11	Asic5	chr3	protein_coding	acid-sensing (proton-gated) ion channel family member 5
novel_NIR_12563	chr3	81897862	81898952	+	81897862	81904098	A3SS	ENSMUST00000142889.2	novel	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	1	0	1	0	n	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	ENSMUSG00000028008.11	Asic5	chr3	protein_coding	acid-sensing (proton-gated) ion channel family member 5
novel_NIR_12564	chr3	81897862	81904155	+	81897862	81904098	A3SS	ENSMUST00000142889.2	novel	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.43	3	4	3	4	y	0.00	0	5	0	5	n	0.00	0	3	0	3	n	ENSMUSG00000028008.11	Asic5	chr3	protein_coding	acid-sensing (proton-gated) ion channel family member 5
novel_NIR_12565	chr3	81897862	81904189	+	81897862	81904098	A3SS	ENSMUST00000142889.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.29	2	5	2	5	y	0.25	1	3	1	3	n	ENSMUSG00000028008.11	Asic5	chr3	protein_coding	acid-sensing (proton-gated) ion channel family member 5
novel_NIR_12566	chr3	81903591	81904098	+	81897862	81904098	A5SS	ENSMUST00000142889.2	novel	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.50	2	2	2	2	y	0.57	4	3	4	3	y	0.44	4	5	4	5	y	0.00	0	3	0	3	n	0.33	2	4	2	4	y	0.00	0	5	0	5	n	0.00	0	3	0	3	n	ENSMUSG00000028008.11	Asic5	chr3	protein_coding	acid-sensing (proton-gated) ion channel family member 5
novel_NIR_12567	chr3	81907197	81908431	+	81907197	81911753	A3SS	ENSMUST00000029641.10	novel	0.08	1	11	1	11	n	0.18	2	9	2	9	y	0.20	2	8	2	8	y	0.00	0	7	0	7	n	0.06	1	17	1	17	n	0.00	0	14	0	14	n	0.23	3	10	3	10	y	0.06	1	17	1	17	n	0.09	1	10	1	10	n	0.09	1	10	1	10	n	0.25	2	6	2	6	y	0.11	1	8	1	8	n	ENSMUSG00000028008.11	Asic5	chr3	protein_coding	acid-sensing (proton-gated) ion channel family member 5
novel_NIR_12568	chr3	82894908	82904534	-	82894908	82915661	A5SS	ENSMUST00000193581.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000102595.2	Gm30097	chr3	lncRNA	predicted gene, 30097
novel_NIR_12569	chr3	82904636	82915661	-	82894908	82915661	A3SS	ENSMUST00000193581.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000102595.2	Gm30097	chr3	lncRNA	predicted gene, 30097
novel_NIR_12570	chr3	82910259	82915661	-	82894908	82915661	A3SS	ENSMUST00000193581.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000102595.2	Gm30097	chr3	lncRNA	predicted gene, 30097
novel_NIR_12571	chr3	82939286	82939842	+	82939286	82940008	A3SS	ENSMUST00000166581.4	novel	0.00	0	547	0	547	n	0.00	0	536	0	536	n	0.00	0	2384	0	2384	n	0.05	35	700	35	700	n	0.31	639	1436	639	1436	y	0.35	687	1293	687	1293	y	0.00	0	1388	0	1388	n	0.49	1023	1068	1023	1068	y	0.00	0	579	0	579	n	0.00	0	668	0	668	n	0.00	0	393	0	393	n	0.00	0	652	0	652	n	ENSMUSG00000028001.17	Fga	chr3	protein_coding	fibrinogen alpha chain
novel_NIR_12572	chr3	83746096	83748331	-	83746096	83748196	A5SS	ENSMUST00000029623.11	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	37	0	37	n	0.20	1	4	1	4	n	0.12	1	7	1	7	n	0.00	0	17	0	17	n	0.00	0	11	0	11	n	0.06	2	29	2	29	n	0.00	0	6	0	6	n	0.50	2	2	2	2	y	0.50	1	1	1	1	n	0.00	0	1	0	1	n	ENSMUSG00000027995.11	Tlr2	chr3	protein_coding	toll-like receptor 2
novel_NIR_12573	chr3	83816637	83817676	-	83813732	83817676	A3SS	ENSMUST00000192095.6	novel	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.33	2	4	2	4	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000033767.15	Tmem131l	chr3	protein_coding	transmembrane 131 like
novel_NIR_12574	chr3	84012356	84041325	-	84012356;84023808	84023734;84041325	ES	ENSMUST00000047368.8	novel	0.03	1	31.5	1	31;32	n	0.00	0	20.0	0	24;16	n	0.00	0	12.0	0	16;8	n	0.17	5	24.5	5	28;21	y	0.06	2	31.5	2	37;26	n	0.15	1	5.5	1	7;4	n	0.04	1	26.5	1	34;19	n	0.00	0	11.0	0	10;12	n	0.24	5	16.0	5	19;13	y	0.13	5	32.5	5	39;26	n	0.10	3	28.0	3	27;29	n	0.07	2	27.5	2	31;24	n	ENSMUSG00000033752.8	Mnd1	chr3	protein_coding	meiotic nuclear divisions 1
novel_NIR_12575	chr3	84049071;84057230	84057196;84062969	-	84049071	84062969	cassetteExon	ENSMUST00000047368.8	novel	0.05	1.0	19	1;1	19	n	0.00	0.0	23	0;0	23	n	0.08	1.0	11	0;2	11	n	0.00	0.0	15	0;0	15	n	0.00	0.0	12	0;0	12	n	0.00	0.0	2	0;0	2	n	0.00	0.0	15	0;0	15	n	0.00	0.0	5	0;0	5	n	0.17	2.5	12	2;3	12	y	0.00	0.0	14	0;0	14	n	0.00	0.0	21	0;0	21	n	0.00	0.0	9	0;0	9	n	ENSMUSG00000033752.8	Mnd1	chr3	protein_coding	meiotic nuclear divisions 1
novel_NIR_12576	chr3	84057230	84062969	-	84049071	84062969	A3SS	ENSMUST00000047368.8	novel	0.05	1	19	1	19	n	0.00	0	23	0	23	n	0.15	2	11	2	11	y	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.20	3	12	3	12	n	0.00	0	14	0	14	n	0.00	0	21	0	21	n	0.00	0	9	0	9	n	ENSMUSG00000033752.8	Mnd1	chr3	protein_coding	meiotic nuclear divisions 1
novel_NIR_12577	chr3	84132342	84166632	-	84117658	84166632	A3SS	ENSMUST00000147901.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027993.17	Trim2	chr3	protein_coding	tripartite motif-containing 2
novel_NIR_12578	chr3	84132342	84166632	-	84117661	84166632	A3SS	ENSMUST00000107691.8	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.17	2	10	2	10	y	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	ENSMUSG00000027993.17	Trim2	chr3	protein_coding	tripartite motif-containing 2
novel_NIR_12579	chr3	84132342	84166632	-	84165599	84166632	3pMXE	ENSMUST00000152953.2	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.33	2	4	2	4	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000027993.17	Trim2	chr3	protein_coding	tripartite motif-containing 2
novel_NIR_12580	chr3	84723076	84810808	+	84723076;84771318	84771271;84810808	ES	ENSMUST00000212597.2	novel	0.00	0	4.0	0	6;2	n	0.00	0	4.0	0	6;2	n	0.00	0	13.0	0	16;10	n	0.17	1	5.0	1	7;3	n	0.09	1	10.5	1	15;6	n	0.00	0	4.0	0	4;4	n	0.00	0	2.5	0	5;0	n	0.00	0	7.5	0	7;8	n	0.15	1	5.5	1	7;4	n	0.21	2	7.5	2	12;3	y	0.00	0	3.0	0	5;1	n	0.00	0	4.5	0	7;2	n	ENSMUSG00000028086.16	Fbxw7	chr3	protein_coding	F-box and WD-40 domain protein 7
novel_NIR_12581	chr3	84771318	84797402	+	84771318	84771444	A3SS&ES	ENSMUST00000107679.8	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.22	2	7	2	7	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	ENSMUSG00000028086.16	Fbxw7	chr3	protein_coding	F-box and WD-40 domain protein 7
novel_NIR_12582	chr3	84771318	84797402	+	84771318	84810808	A3SS	ENSMUST00000212597.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.25	2	6	2	6	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000028086.16	Fbxw7	chr3	protein_coding	F-box and WD-40 domain protein 7
novel_NIR_12583	chr3	84771318	84797402	+	84771507	84797402	5pMXE	ENSMUST00000107678.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028086.16	Fbxw7	chr3	protein_coding	F-box and WD-40 domain protein 7
novel_NIR_12584	chr3	85483321	85506981	+	85483321	85509167	A3SS	ENSMUST00000107672.8	novel	0.08	2	24	2	24	n	0.00	0	25	0	25	n	0.17	4	20	4	20	y	0.00	0	42	0	42	n	0.05	2	39	2	39	n	0.09	1	10	1	10	n	0.00	0	49	0	49	n	0.06	1	16	1	16	n	0.00	0	53	0	53	n	0.01	1	69	1	69	n	0.00	0	42	0	42	n	0.04	2	52	2	52	n	ENSMUSG00000028085.13	Gatb	chr3	protein_coding	glutamyl-tRNA(Gln) amidotransferase, subunit B
novel_NIR_12585	chr3	85497414	85509167	+	85483321	85509167	A5SS	ENSMUST00000107672.8	novel	0.11	3	24	3	24	n	0.00	0	25	0	25	n	0.13	3	20	3	20	n	0.12	6	42	6	42	n	0.05	2	39	2	39	n	0.00	0	10	0	10	n	0.09	5	49	5	49	n	0.16	3	16	3	16	y	0.02	1	53	1	53	n	0.05	4	69	4	69	n	0.00	0	42	0	42	n	0.07	4	52	4	52	n	ENSMUSG00000028085.13	Gatb	chr3	protein_coding	glutamyl-tRNA(Gln) amidotransferase, subunit B
novel_NIR_12586	chr3	85648681	85650276	-	85648681	85653396	A5SS	ENSMUST00000118408.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000051000.18	Fam160a1	chr3	protein_coding	family with sequence similarity 160, member A1
novel_NIR_12587	chr3	85648681	85655760	-	85648681	85653396	5pMXE	ENSMUST00000118408.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000051000.18	Fam160a1	chr3	protein_coding	family with sequence similarity 160, member A1
novel_NIR_12588	chr3	85648681	85692525	-	84447929	85692525	A3SS	ENSMUST00000154148.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	12	0	12	0	y	1.00	6	0	6	0	y	1.00	8	0	8	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	6	0	6	0	y	1.00	4	0	4	0	y	1.00	5	0	5	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000102805.6	Gm37240	chr3	protein_coding	predicted gene, 37240
novel_NIR_12589	chr3	85648681	85692525	-	85629857	85692525	A3SS	ENSMUST00000119077.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	12	0	12	0	y	1.00	6	0	6	0	y	1.00	8	0	8	0	y	0.67	2	1	2	1	y	1.00	3	0	3	0	y	1.00	6	0	6	0	y	1.00	4	0	4	0	y	1.00	5	0	5	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000051000.18	Fam160a1	chr3	protein_coding	family with sequence similarity 160, member A1
novel_NIR_12590	chr3	85648681	85692525	-	85648681	85653396	5pMXE	ENSMUST00000118408.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	12	0	12	0	y	1.00	6	0	6	0	y	1.00	8	0	8	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	6	0	6	0	y	1.00	4	0	4	0	y	1.00	5	0	5	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000051000.18	Fam160a1	chr3	protein_coding	family with sequence similarity 160, member A1
novel_NIR_12591	chr3	85655820	85692525	-	84447929	85692525	A3SS	ENSMUST00000154148.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000102805.6	Gm37240	chr3	protein_coding	predicted gene, 37240
novel_NIR_12592	chr3	85655820	85692525	-	85629857	85692525	A3SS	ENSMUST00000119077.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000051000.18	Fam160a1	chr3	protein_coding	family with sequence similarity 160, member A1
novel_NIR_12593	chr3	85692626	85724479	-	85709976	85724479	3pMXE	ENSMUST00000125216.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000102805.6	Gm37240	chr3	protein_coding	predicted gene, 37240
novel_NIR_12594	chr3	85724598	85752708	-	85724598	85727154	A5SS&ES	ENSMUST00000125216.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000102805.6	Gm37240	chr3	protein_coding	predicted gene, 37240
novel_NIR_12595	chr3	85724598	85752708	-	85724598	85794434	A5SS	ENSMUST00000154148.8	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.12	2	14	2	14	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.25	2	6	2	6	y	0.00	0	10	0	10	n	0.50	5	5	5	5	y	0.00	0	5	0	5	n	0.11	1	8	1	8	n	-	-	-	-	-	-	0.00	0	7	0	7	n	ENSMUSG00000102805.6	Gm37240	chr3	protein_coding	predicted gene, 37240
novel_NIR_12596	chr3	85924987	85948133	+	85946307	85948133	5pMXE	ENSMUST00000238331.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	ENSMUSG00000028082.15	Sh3d19	chr3	protein_coding	SH3 domain protein D19
novel_NIR_12597	chr3	85982495	85983905	+	85982495	85986252	A3SS	ENSMUST00000238545.2	novel	0.20	2	8	2	8	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.26	5	14	5	14	n	0.25	2	6	2	6	y	0.08	1	12	1	12	n	ENSMUSG00000028082.15	Sh3d19	chr3	protein_coding	SH3 domain protein D19
novel_NIR_12598	chr3	85982495;85984044	85983905;85986252	+	85982495	85986252	cassetteExon	ENSMUST00000238545.2	novel	0.11	1.0	8	2;0	8	n	0.00	0.0	7	0;0	7	n	0.00	0.0	6	0;0	6	n	0.00	0.0	10	0;0	10	n	0.00	0.0	7	0;0	7	n	0.00	0.0	3	0;0	3	n	0.00	0.0	13	0;0	13	n	0.09	0.5	5	0;1	5	n	0.08	0.5	6	0;1	6	n	0.22	4.0	14	5;3	14	y	0.14	1.0	6	2;0	6	n	0.08	1.0	12	1;1	12	n	ENSMUSG00000028082.15	Sh3d19	chr3	protein_coding	SH3 domain protein D19
novel_NIR_12599	chr3	85984044	85987702	+	85986291	85987702	A5SS&ES	ENSMUST00000238545.2	novel	0.20	1	4	1	4	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.16	3	16	3	16	y	0.00	0	15	0	15	n	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.00	0	15	0	15	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	ENSMUSG00000028082.15	Sh3d19	chr3	protein_coding	SH3 domain protein D19
novel_NIR_12600	chr3	85992664	85993033	+	85992664	86005454	A3SS	ENSMUST00000238606.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	8	0	8	0	y	0.67	2	1	2	1	y	-	-	-	-	-	-	ENSMUSG00000028082.15	Sh3d19	chr3	protein_coding	SH3 domain protein D19
novel_NIR_12601	chr3	86644478	86648697	+	86644478	86648712	A3SS	ENSMUST00000192145.6	novel	0.17	3	15	3	15	y	0.00	0	26	0	26	n	0.06	3	47	3	47	n	0.12	3	23	3	23	n	0.02	1	42	1	42	n	0.03	1	30	1	30	n	0.13	7	46	7	46	n	0.06	2	29	2	29	n	0.09	2	20	2	20	n	0.16	6	32	6	32	y	0.06	2	31	2	31	n	0.00	0	17	0	17	n	ENSMUSG00000028080.17	Lrba	chr3	protein_coding	LPS-responsive beige-like anchor
novel_NIR_12602	chr3	86680508	86683308	+	86680508	86683305	A3SS	ENSMUST00000194759.6	novel	0.00	0	21	0	21	n	0.00	0	24	0	24	n	0.00	0	50	0	50	n	0.00	0	34	0	34	n	0.02	1	59	1	59	n	0.04	1	23	1	23	n	0.20	8	32	8	32	y	0.08	3	34	3	34	n	0.00	0	25	0	25	n	0.06	3	49	3	49	n	0.00	0	34	0	34	n	0.12	4	30	4	30	n	ENSMUSG00000028080.17	Lrba	chr3	protein_coding	LPS-responsive beige-like anchor
novel_NIR_12603	chr3	86894567	86895585	+	86894567;86895128	86894850;86895585	ES	ENSMUST00000194208.6	novel	0.40	1	1.5	1	1;2	n	0.67	1	0.5	1	1;0	n	-	-	-	-	-	-	0.40	1	1.5	1	2;1	n	0.13	1	6.5	1	1;12	n	0.00	0	1.0	0	1;1	n	0.50	2	2.0	2	1;3	y	0.75	3	1.0	3	2;0	y	1.00	2	0.0	2	0;0	y	0.33	1	2.0	1	0;4	n	0.50	1	1.0	1	0;2	n	0.00	0	2.0	0	0;4	n	ENSMUSG00000041750.14	Cd1d2	chr3	polymorphic_pseudogene	CD1d2 antigen
novel_NIR_12604	chr3	86894567	86895585	+	86895128	86895585	A5SS&ES	ENSMUST00000192481.2	novel	0.33	1	2	1	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.08	1	12	1	12	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	0.20	1	4	1	4	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	ENSMUSG00000041750.14	Cd1d2	chr3	polymorphic_pseudogene	CD1d2 antigen
novel_NIR_12605	chr3	86904923	86905940	-	86904923	86906054	A5SS	ENSMUST00000063869.11	novel	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	ENSMUSG00000028076.13	Cd1d1	chr3	protein_coding	CD1d1 antigen
novel_NIR_12606	chr3	86905657	86906054	-	86904923	86906054	A3SS	ENSMUST00000063869.11	novel	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.67	4	2	4	2	y	0.25	1	3	1	3	n	0.80	4	1	4	1	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000028076.13	Cd1d1	chr3	protein_coding	CD1d1 antigen
novel_NIR_12607	chr3	87433285	87434568	+	87432966	87434568	A5SS	ENSMUST00000119109.8	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.50	1	1	1	1	n	0.00	0	2	0	2	n	ENSMUSG00000003382.19	Etv3	chr3	protein_coding	ets variant 3
novel_NIR_12608	chr3	87640811	87642652	+	87640811;87641859	87641731;87642652	ES	ENSMUST00000039476.15	novel	0.79	27	7.0	27	6;8	y	0.64	28	15.5	28	14;17	y	0.47	20	22.5	20	24;21	y	0.77	31	9.5	31	9;10	y	0.73	43	16.0	43	17;15	y	0.46	14	16.5	14	15;18	y	0.61	35	22.5	35	20;25	y	0.51	11	10.5	11	7;14	y	0.69	11	5.0	11	9;1	y	0.70	28	12.0	28	7;17	y	0.74	33	11.5	33	12;11	y	0.63	30	17.5	30	16;19	y	ENSMUSG00000041977.19	Arhgef11	chr3	protein_coding	Rho guanine nucleotide exchange factor (GEF) 11
novel_NIR_12609	chr3	87661201	87661342	-	87661201	87661371	A5SS	ENSMUST00000174267.8	novel	0.00	0	6	0	6	n	0.33	2	4	2	4	y	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	ENSMUSG00000028073.16	Pear1	chr3	protein_coding	platelet endothelial aggregation receptor 1
novel_NIR_12610	chr3	87661201	87661342	-	87661201	87661774	A5SS	ENSMUST00000174219.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028073.16	Pear1	chr3	protein_coding	platelet endothelial aggregation receptor 1
novel_NIR_12611	chr3	87695079	87695624	-	87693407	87695624	A3SS	ENSMUST00000029712.5	novel	-	-	-	-	-	-	0.00	0	5	0	5	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000028072.7	Ntrk1	chr3	protein_coding	neurotrophic tyrosine kinase, receptor, type 1
novel_NIR_12612	chr3	87814374	87820398	+	87814472	87820398	A5SS	ENSMUST00000159492.8	novel	0.22	6	21	6	21	y	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.00	0	20	0	20	n	0.00	0	21	0	21	n	0.12	1	7	1	7	n	0.00	0	23	0	23	n	0.00	0	12	0	12	n	0.00	0	19	0	19	n	0.04	2	44	2	44	n	0.00	0	19	0	19	n	0.00	0	29	0	29	n	ENSMUSG00000004897.17	Hdgf	chr3	protein_coding	heparin binding growth factor
novel_NIR_12613	chr3	87814374	87820398	+	87814874	87820398	5pMXE	ENSMUST00000161616.8	novel	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000004897.17	Hdgf	chr3	protein_coding	heparin binding growth factor
novel_NIR_12614	chr3	87814374	87820398	+	87817370	87820398	5pMXE	ENSMUST00000160198.2	novel	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000004897.17	Hdgf	chr3	protein_coding	heparin binding growth factor
novel_NIR_12615	chr3	87814396	87820398	+	87814874	87820398	5pMXE	ENSMUST00000161616.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000004897.17	Hdgf	chr3	protein_coding	heparin binding growth factor
novel_NIR_12616	chr3	87814396	87820398	+	87817370	87820398	5pMXE	ENSMUST00000160198.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000004897.17	Hdgf	chr3	protein_coding	heparin binding growth factor
novel_NIR_12617	chr3	87815537	87820398	+	87814874	87820398	A5SS	ENSMUST00000161616.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000004897.17	Hdgf	chr3	protein_coding	heparin binding growth factor
novel_NIR_12618	chr3	87815537	87820398	+	87817370	87820398	5pMXE	ENSMUST00000160198.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000004897.17	Hdgf	chr3	protein_coding	heparin binding growth factor
novel_NIR_12619	chr3	87831835	87832249	-	87831835	87832199	A5SS	ENSMUST00000160068.2	novel	0.75	6	2	6	2	y	0.75	6	2	6	2	y	-	-	-	-	-	-	0.75	3	1	3	1	y	0.38	3	5	3	5	y	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.83	5	1	5	1	y	0.80	8	2	8	2	y	0.40	2	3	2	3	y	-	-	-	-	-	-	ENSMUSG00000004896.17	Rrnad1	chr3	protein_coding	ribosomal RNA adenine dimethylase domain containing 1
novel_NIR_12620	chr3	87831835	87832249	-	87831835	87832254	A5SS	ENSMUST00000005016.16	novel	0.67	6	3	6	3	y	0.60	6	4	6	4	y	0.00	0	10	0	10	n	0.43	3	4	3	4	y	0.18	3	14	3	14	y	0.00	0	7	0	7	n	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.29	5	12	5	12	y	0.50	8	8	8	8	y	0.20	2	8	2	8	y	0.00	0	7	0	7	n	ENSMUSG00000004896.17	Rrnad1	chr3	protein_coding	ribosomal RNA adenine dimethylase domain containing 1
novel_NIR_12621	chr3	87831835	87832249	-	87831835	87834038	A5SS	ENSMUST00000160143.2	novel	1.00	6	0	6	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	8	0	8	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000004896.17	Rrnad1	chr3	protein_coding	ribosomal RNA adenine dimethylase domain containing 1
novel_NIR_12622	chr3	87834967	87835231	-	87835022	87835231	A3SS	ENSMUST00000160648.8	novel	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.40	2	3	2	3	y	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000004896.17	Rrnad1	chr3	protein_coding	ribosomal RNA adenine dimethylase domain containing 1
novel_NIR_12623	chr3	87834967	87835231	-	87835062	87835231	A3SS	ENSMUST00000159091.9	novel	0.00	0	6	0	6	n	0.08	1	11	1	11	n	0.10	1	9	1	9	n	0.00	0	5	0	5	n	0.11	1	8	1	8	n	0.20	2	8	2	8	y	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	ENSMUSG00000004896.17	Rrnad1	chr3	protein_coding	ribosomal RNA adenine dimethylase domain containing 1
novel_NIR_12624	chr3	88050806	88062985	+	88049981	88062985	A5SS	ENSMUST00000001455.13	novel	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.10	3	27	3	27	n	0.06	1	17	1	17	n	0.00	0	31	0	31	n	0.00	0	12	0	12	n	0.16	4	21	4	21	y	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.12	2	15	2	15	n	ENSMUSG00000001419.18	Mef2d	chr3	protein_coding	myocyte enhancer factor 2D
novel_NIR_12625	chr3	88075502	88075939	+	88075041	88075939	A5SS	ENSMUST00000139153.2	novel	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000001419.18	Mef2d	chr3	protein_coding	myocyte enhancer factor 2D
novel_NIR_12626	chr3	88075502	88075939	+	88075651	88075939	A5SS	ENSMUST00000001455.13	novel	0.00	0	9	0	9	n	0.22	2	7	2	7	y	0.00	0	35	0	35	n	0.00	0	21	0	21	n	0.00	0	25	0	25	n	0.00	0	15	0	15	n	0.00	0	21	0	21	n	0.00	0	22	0	22	n	0.00	0	9	0	9	n	0.00	0	16	0	16	n	0.00	0	10	0	10	n	0.00	0	19	0	19	n	ENSMUSG00000001419.18	Mef2d	chr3	protein_coding	myocyte enhancer factor 2D
novel_NIR_12627	chr3	88075502	88075939	+	88075765	88075939	5pMXE	ENSMUST00000152861.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000001419.18	Mef2d	chr3	protein_coding	myocyte enhancer factor 2D
novel_NIR_12628	chr3	88083242	88085086	-	88083242	88084894	5pMXE	ENSMUST00000197172.5	novel	0.00	0	20	0	20	n	0.00	0	14	0	14	n	0.00	0	15	0	15	n	0.00	0	17	0	17	n	0.03	1	31	1	31	n	0.00	0	11	0	11	n	0.03	1	29	1	29	n	0.00	0	16	0	16	n	0.18	3	14	3	14	y	0.07	3	38	3	38	n	0.04	1	24	1	24	n	0.06	1	16	1	16	n	ENSMUSG00000096935.6	1700113A16Rik	chr3	lncRNA	RIKEN cDNA 1700113A16 gene
novel_NIR_12629	chr3	88152573	88152759	-	88152573	88152743	A5SS	ENSMUST00000171887.4	novel	0.00	0	15	0	15	n	0.00	0	28	0	28	n	0.00	0	10	0	10	n	0.03	1	30	1	30	n	0.00	0	22	0	22	n	0.00	0	8	0	8	n	0.05	1	21	1	21	n	0.22	2	7	2	7	y	0.00	0	28	0	28	n	0.00	0	38	0	38	n	0.00	0	41	0	41	n	0.00	0	24	0	24	n	ENSMUSG00000104445.2	Rhbg	chr3	protein_coding	Rhesus blood group-associated B glycoprotein
novel_NIR_12630	chr3	88190291	88202698	-	88190291;88194524	88194405;88202698	ES	ENSMUST00000107556.10	novel	0.15	5	27.5	5	4;51	y	0.07	1	13.0	1	9;17	n	0.05	1	20.5	1	12;29	n	0.00	0	13.5	0	4;23	n	0.06	2	29.0	2	10;48	n	0.11	1	8.0	1	5;11	n	0.14	5	29.5	5	17;42	n	0.07	1	13.0	1	4;22	n	0.07	1	14.0	1	5;23	n	0.18	5	22.5	5	14;31	y	0.08	2	23.0	2	9;37	n	0.11	3	23.5	3	8;39	n	ENSMUSG00000010538.15	Tsacc	chr3	protein_coding	TSSK6 activating co-chaperone
novel_NIR_12631	chr3	88190291;88193376	88193308;88194405	-	88190291	88194405	cassetteExon	ENSMUST00000107556.10	novel	0.76	13.0	4	11;15	4	y	0.65	16.5	9	13;20	9	y	0.57	16.0	12	13;19	12	y	0.60	6.0	4	1;11	4	n	0.66	19.0	10	14;24	10	y	0.33	2.5	5	1;4	5	n	0.52	18.5	17	9;28	17	y	0.58	5.5	4	1;10	4	n	0.69	11.0	5	8;14	5	y	0.60	21.0	14	14;28	14	y	0.63	15.5	9	9;22	9	y	0.61	12.5	8	3;22	8	y	ENSMUSG00000010538.15	Tsacc	chr3	protein_coding	TSSK6 activating co-chaperone
novel_NIR_12632	chr3	88193376	88194405	-	88155770	88194405	A3SS	ENSMUST00000165196.8	novel	1.00	15	0	15	0	y	1.00	20	0	20	0	y	1.00	19	0	19	0	y	1.00	11	0	11	0	y	1.00	24	0	24	0	y	1.00	4	0	4	0	y	1.00	28	0	28	0	y	1.00	10	0	10	0	y	1.00	14	0	14	0	y	1.00	28	0	28	0	y	1.00	22	0	22	0	y	1.00	22	0	22	0	y	ENSMUSG00000103766.6	Gm38392	chr3	protein_coding	predicted gene, 38392
novel_NIR_12633	chr3	88193376	88194405	-	88187459	88194405	A3SS	ENSMUST00000163277.2	novel	1.00	15	0	15	0	y	1.00	20	0	20	0	y	1.00	19	0	19	0	y	1.00	11	0	11	0	y	1.00	24	0	24	0	y	1.00	4	0	4	0	y	1.00	28	0	28	0	y	1.00	10	0	10	0	y	1.00	14	0	14	0	y	1.00	28	0	28	0	y	0.96	22	1	22	1	y	1.00	22	0	22	0	y	ENSMUSG00000103766.6	Gm38392	chr3	protein_coding	predicted gene, 38392
novel_NIR_12634	chr3	88233238	88233503	+	88233238	88233718	A3SS	ENSMUST00000001454.14	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000001418.14	Glmp	chr3	protein_coding	glycosylated lysosomal membrane protein
novel_NIR_12635	chr3	88233238	88233503	+	88233238	88235599	A3SS	ENSMUST00000176519.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000001418.14	Glmp	chr3	protein_coding	glycosylated lysosomal membrane protein
novel_NIR_12636	chr3	88240989	88242837	-	88240989	88241415	5pMXE	ENSMUST00000107553.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000001420.14	Tmem79	chr3	protein_coding	transmembrane protein 79
novel_NIR_12637	chr3	88240989	88242837	-	88240989	88241689	5pMXE	ENSMUST00000001456.11	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.50	1	1	1	1	n	-	-	-	-	-	-	0.60	3	2	3	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000001420.14	Tmem79	chr3	protein_coding	transmembrane protein 79
novel_NIR_12638	chr3	88240989	88242837	-	88240989	88243210	A5SS	ENSMUST00000193872.2	novel	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.14	1	6	1	6	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000001420.14	Tmem79	chr3	protein_coding	transmembrane protein 79
novel_NIR_12639	chr3	88301877	88303239	-	88301877	88303021	A5SS&ES	ENSMUST00000192365.2	novel	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	ENSMUSG00000028066.16	Pmf1	chr3	protein_coding	polyamine-modulated factor 1
novel_NIR_12640	chr3	88303114	88303212	-	88303117	88303212	A3SS	ENSMUST00000192365.2	novel	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.14	1	6	1	6	n	0.33	2	4	2	4	y	ENSMUSG00000028066.16	Pmf1	chr3	protein_coding	polyamine-modulated factor 1
novel_NIR_12641	chr3	88323417	88327808	-	88320204	88327808	A3SS	ENSMUST00000168755.7	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.56	5	4	5	4	y	0.92	11	1	11	1	y	0.92	12	1	12	1	y	1.00	20	0	20	0	y	0.94	17	1	17	1	y	ENSMUSG00000050144.14	Slc25a44	chr3	protein_coding	solute carrier family 25, member 44
novel_NIR_12642	chr3	88323417	88327808	-	88323422	88327808	A3SS	ENSMUST00000193433.6	novel	0.00	0	63	0	63	n	0.00	0	41	0	41	n	0.07	5	63	5	63	n	0.00	0	92	0	92	n	0.06	7	106	7	106	n	0.03	1	39	1	39	n	0.00	0	105	0	105	n	0.07	5	62	5	62	n	0.11	11	92	11	92	n	0.11	12	94	12	94	n	0.20	20	78	20	78	y	0.15	17	97	17	97	y	ENSMUSG00000050144.14	Slc25a44	chr3	protein_coding	solute carrier family 25, member 44
novel_NIR_12643	chr3	88328445	88328788	-	88328445	88332081	A5SS	ENSMUST00000195657.6	novel	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.00	0	15	0	15	n	0.22	2	7	2	7	y	0.00	0	17	0	17	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.00	0	31	0	31	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	ENSMUSG00000050144.14	Slc25a44	chr3	protein_coding	solute carrier family 25, member 44
novel_NIR_12644	chr3	88328445	88328788	-	88328445	88332153	A5SS	ENSMUST00000193433.6	novel	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.29	2	5	2	5	y	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.00	0	28	0	28	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	ENSMUSG00000050144.14	Slc25a44	chr3	protein_coding	solute carrier family 25, member 44
novel_NIR_12645	chr3	88362153	88362268	-	88362153	88362387	A5SS	ENSMUST00000125526.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.20	1	4	1	4	n	-	-	-	-	-	-	0.17	1	5	1	5	n	0.50	2	2	2	2	y	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	ENSMUSG00000028064.18	Sema4a	chr3	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
novel_NIR_12646	chr3	88362153	88362268	-	88362153	88362565	A5SS	ENSMUST00000184487.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000028064.18	Sema4a	chr3	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
novel_NIR_12647	chr3	88362153	88362268	-	88362153	88366118	A5SS	ENSMUST00000169222.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000028064.18	Sema4a	chr3	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
novel_NIR_12648	chr3	88362153	88362268	-	88362153	88366294	A5SS	ENSMUST00000165898.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000028064.18	Sema4a	chr3	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
novel_NIR_12649	chr3	88362153	88362268	-	88362153	88368454	A5SS	ENSMUST00000166237.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000028064.18	Sema4a	chr3	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
novel_NIR_12650	chr3	88362153	88362588	-	88362153	88362565	A5SS	ENSMUST00000184487.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028064.18	Sema4a	chr3	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
novel_NIR_12651	chr3	88362153	88362588	-	88362153	88366118	A5SS	ENSMUST00000169222.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028064.18	Sema4a	chr3	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
novel_NIR_12652	chr3	88362153	88362588	-	88362153	88366294	A5SS	ENSMUST00000165898.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028064.18	Sema4a	chr3	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
novel_NIR_12653	chr3	88362153	88362588	-	88362153	88368454	A5SS	ENSMUST00000166237.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028064.18	Sema4a	chr3	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
novel_NIR_12654	chr3	88362153	88362588	-	88362153;88362499	88362387;88362588	ES	ENSMUST00000125526.8	novel	0.00	0	0.5	0	1;0	n	0.00	0	0.5	0	1;0	n	0.57	2	1.5	2	3;0	y	0.40	1	1.5	1	3;0	n	0.00	0	2.0	0	4;0	n	-	-	-	-	-	-	0.00	0	3.5	0	5;2	n	0.00	0	1.0	0	2;0	n	0.00	0	5.0	0	10;0	n	0.18	1	4.5	1	9;0	n	0.00	0	1.5	0	3;0	n	0.00	0	1.5	0	3;0	n	ENSMUSG00000028064.18	Sema4a	chr3	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
novel_NIR_12655	chr3	88362499	88362855	-	88362499	88362588	5pMXE	ENSMUST00000125526.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	0.50	2	2	2	2	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000028064.18	Sema4a	chr3	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
novel_NIR_12656	chr3	88395738	88407999	-	88395738	88400544	5pMXE	ENSMUST00000036252.7	novel	1.00	4	0	4	0	y	1.00	5	0	5	0	y	1.00	5	0	5	0	y	1.00	10	0	10	0	y	1.00	10	0	10	0	y	1.00	7	0	7	0	y	1.00	10	0	10	0	y	1.00	7	0	7	0	y	1.00	13	0	13	0	y	1.00	10	0	10	0	y	1.00	2	0	2	0	y	1.00	8	0	8	0	y	ENSMUSG00000028063.16	Lmna	chr3	protein_coding	lamin A
novel_NIR_12657	chr3	88410466	88411476	-	88410693	88411476	A3SS	ENSMUST00000149068.2	novel	0.50	1	1	1	1	n	0.00	0	7	0	7	n	0.25	2	6	2	6	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.33	2	4	2	4	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028063.16	Lmna	chr3	protein_coding	lamin A
novel_NIR_12658	chr3	88411550	88413751	-	88411550	88417188	A5SS	ENSMUST00000149068.2	novel	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.62	8	5	8	5	n	0.67	2	1	2	1	y	0.50	1	1	1	1	n	0.40	2	3	2	3	n	0.43	3	4	3	4	y	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	ENSMUSG00000028063.16	Lmna	chr3	protein_coding	lamin A
novel_NIR_12659	chr3	88411550;88413827	88413751;88417188	-	88411550	88417188	cassetteExon	ENSMUST00000149068.2	novel	0.00	0.0	4	0;0	4	n	0.20	1.5	6	1;2	6	n	0.00	0.0	5	0;0	5	n	0.00	0.0	5	0;0	5	n	0.47	4.5	5	8;1	5	n	0.50	1.0	1	2;0	1	n	0.33	0.5	1	1;0	1	n	0.40	2.0	3	2;2	3	y	0.27	1.5	4	3;0	4	n	0.14	0.5	3	1;0	3	n	0.00	0.0	3	0;0	3	n	0.33	1.0	2	2;0	2	n	ENSMUSG00000028063.16	Lmna	chr3	protein_coding	lamin A
novel_NIR_12660	chr3	88458092	88459650	-	88458092	88460037	A5SS	ENSMUST00000156421.2	novel	0.00	0	5	0	5	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.50	1	1	1	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	4	2	4	2	y	-	-	-	-	-	-	ENSMUSG00000028062.16	Lamtor2	chr3	protein_coding	late endosomal/lysosomal adaptor, MAPK and MTOR activator 2
novel_NIR_12661	chr3	88458092	88460103	-	88458092	88460037	A5SS	ENSMUST00000156421.2	novel	0.44	4	5	4	5	y	-	-	-	-	-	-	0.83	5	1	5	1	y	1.00	7	0	7	0	y	0.80	4	1	4	1	y	-	-	-	-	-	-	0.80	4	1	4	1	y	0.67	4	2	4	2	y	1.00	4	0	4	0	y	0.50	2	2	2	2	y	0.00	0	2	0	2	n	1.00	4	0	4	0	y	ENSMUSG00000028062.16	Lamtor2	chr3	protein_coding	late endosomal/lysosomal adaptor, MAPK and MTOR activator 2
novel_NIR_12662	chr3	88616248	88617171	+	88616248	88617165	A3SS	ENSMUST00000198042.5	novel	0.00	0	38	0	38	n	0.00	0	23	0	23	n	0.00	0	35	0	35	n	0.00	0	10	0	10	n	0.00	0	36	0	36	n	0.00	0	24	0	24	n	0.12	4	30	4	30	n	0.00	0	16	0	16	n	0.00	0	26	0	26	n	0.00	0	21	0	21	n	0.00	0	18	0	18	n	0.17	5	24	5	24	y	ENSMUSG00000028060.15	Khdc4	chr3	protein_coding	KH domain containing 4, pre-mRNA splicing factor
novel_NIR_12663	chr3	88624448	88624633	+	88624276	88624633	A5SS	ENSMUST00000171645.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	0.50	2	2	2	2	y	0.50	3	3	3	3	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	ENSMUSG00000028057.15	Rit1	chr3	protein_coding	Ras-like without CAAX 1
novel_NIR_12664	chr3	88719465	88726977	+	88719465	88720991	A3SS&ES	ENSMUST00000135913.2	novel	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	19	0	19	n	0.00	0	15	0	15	n	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.33	2	4	2	4	y	ENSMUSG00000078684.9	5830417I10Rik	chr3	unprocessed_pseudogene	RIKEN cDNA 5830417I10 gene
novel_NIR_12665	chr3	88729106	88729347	+	88729106	88730849	A3SS	ENSMUST00000135913.2	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	6	0	6	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	3	0	3	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.50	2	2	2	2	y	0.80	4	1	4	1	y	1.00	6	0	6	0	n	ENSMUSG00000078684.9	5830417I10Rik	chr3	unprocessed_pseudogene	RIKEN cDNA 5830417I10 gene
novel_NIR_12666	chr3	88729106;88729564	88729347;88730849	+	88729106	88730849	cassetteExon	ENSMUST00000135913.2	novel	0.00	0.0	1	0;0	1	n	1.00	1.0	0	1;1	0	n	1.00	5.0	0	6;4	0	y	0.20	0.5	2	0;1	2	n	1.00	1.0	0	0;2	0	n	1.00	2.0	0	3;1	0	n	1.00	0.5	0	1;0	0	n	1.00	1.0	0	2;0	0	n	1.00	0.5	0	1;0	0	n	0.33	1.0	2	2;0	2	n	0.67	2.0	1	4;0	1	n	1.00	3.5	0	6;1	0	n	ENSMUSG00000078684.9	5830417I10Rik	chr3	unprocessed_pseudogene	RIKEN cDNA 5830417I10 gene
novel_NIR_12667	chr3	88729564	88730849	+	88729106	88730849	A5SS	ENSMUST00000135913.2	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	4	0	4	0	n	0.33	1	2	1	2	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	ENSMUSG00000078684.9	5830417I10Rik	chr3	unprocessed_pseudogene	RIKEN cDNA 5830417I10 gene
novel_NIR_12668	chr3	88743049	88744297	+	88742603	88744297	A5SS	ENSMUST00000107498.9	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	5	0	5	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.80	4	1	4	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	ENSMUSG00000054199.18	Gon4l	chr3	protein_coding	gon-4-like (C.elegans)
novel_NIR_12669	chr3	88835827	88836703	-	88834377	88836703	A3SS	ENSMUST00000174571.8	novel	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.50	3	3	3	3	y	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	ENSMUSG00000068921.15	Dap3	chr3	protein_coding	death associated protein 3
novel_NIR_12670	chr3	88838327	88840885	-	88838327	88843456	A5SS	ENSMUST00000172942.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000068921.15	Dap3	chr3	protein_coding	death associated protein 3
novel_NIR_12671	chr3	88843560	88848593	-	88843560	88845373	5pMXE	ENSMUST00000174491.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000068921.15	Dap3	chr3	protein_coding	death associated protein 3
novel_NIR_12672	chr3	88843560	88848593	-	88843560	88857175	A5SS	ENSMUST00000174402.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000068921.15	Dap3	chr3	protein_coding	death associated protein 3
novel_NIR_12673	chr3	88850135	88850581	-	88850135	88857423	A5SS	ENSMUST00000174077.8	novel	0.12	1	7	1	7	n	0.00	0	10	0	10	n	0.36	5	9	5	9	y	0.00	0	9	0	9	n	0.08	1	12	1	12	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.06	1	15	1	15	n	0.14	1	6	1	6	n	0.00	0	8	0	8	n	ENSMUSG00000068921.15	Dap3	chr3	protein_coding	death associated protein 3
novel_NIR_12674	chr3	88850135	88850581	-	88850135	88858176	A5SS	ENSMUST00000173021.8	novel	0.14	1	6	1	6	n	0.00	0	3	0	3	n	0.38	5	8	5	8	y	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	ENSMUSG00000068921.15	Dap3	chr3	protein_coding	death associated protein 3
novel_NIR_12675	chr3	88850135	88850581	-	88850135	88858268	A5SS	ENSMUST00000173135.8	novel	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.36	5	9	5	9	y	0.00	0	9	0	9	n	0.12	1	7	1	7	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.11	1	8	1	8	n	0.00	0	11	0	11	n	ENSMUSG00000068921.15	Dap3	chr3	protein_coding	death associated protein 3
novel_NIR_12676	chr3	88850135	88858133	-	88850135	88857423	5pMXE	ENSMUST00000174077.8	novel	0.12	1	7	1	7	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.06	1	15	1	15	n	0.00	0	6	0	6	n	0.20	2	8	2	8	y	ENSMUSG00000068921.15	Dap3	chr3	protein_coding	death associated protein 3
novel_NIR_12677	chr3	88850135	88858133	-	88850135	88858176	A5SS	ENSMUST00000173021.8	novel	0.14	1	6	1	6	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.50	2	2	2	2	y	ENSMUSG00000068921.15	Dap3	chr3	protein_coding	death associated protein 3
novel_NIR_12678	chr3	88850135	88858133	-	88850135	88858268	A5SS	ENSMUST00000173135.8	novel	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.00	0	8	0	8	n	0.15	2	11	2	11	y	ENSMUSG00000068921.15	Dap3	chr3	protein_coding	death associated protein 3
novel_NIR_12679	chr3	88850135	88858448	-	88850135	88857423	5pMXE	ENSMUST00000174077.8	novel	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.20	3	12	3	12	y	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.00	0	4	0	4	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	ENSMUSG00000068921.15	Dap3	chr3	protein_coding	death associated protein 3
novel_NIR_12680	chr3	88850135	88858448	-	88850135	88858176	5pMXE	ENSMUST00000173021.8	novel	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.38	3	5	3	5	y	0.40	2	3	2	3	y	0.00	0	8	0	8	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	ENSMUSG00000068921.15	Dap3	chr3	protein_coding	death associated protein 3
novel_NIR_12681	chr3	88850135	88858448	-	88850135	88858268	A5SS	ENSMUST00000173135.8	novel	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.30	3	7	3	7	y	0.17	2	10	2	10	y	0.00	0	5	0	5	n	0.25	2	6	2	6	y	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	ENSMUSG00000068921.15	Dap3	chr3	protein_coding	death associated protein 3
novel_NIR_12682	chr3	88850719	88857175	-	88843560	88857175	A3SS	ENSMUST00000174402.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000068921.15	Dap3	chr3	protein_coding	death associated protein 3
novel_NIR_12683	chr3	88857695	88873119	+	88858302	88873119	5pMXE	ENSMUST00000186583.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028053.14	Ash1l	chr3	protein_coding	ASH1 like histone lysine methyltransferase
novel_NIR_12684	chr3	88858295	88873119	+	88858302	88873119	A5SS	ENSMUST00000186583.7	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	6	0	6	0	y	ENSMUSG00000028053.14	Ash1l	chr3	protein_coding	ASH1 like histone lysine methyltransferase
novel_NIR_12685	chr3	88872109	88873119	+	88858302	88873119	A5SS	ENSMUST00000186583.7	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028053.14	Ash1l	chr3	protein_coding	ASH1 like histone lysine methyltransferase
novel_NIR_12686	chr3	89008138	89008962	-	89008138	89009063	A5SS	ENSMUST00000199668.3	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.75	3	1	3	1	y	0.00	0	2	0	2	n	0.83	5	1	5	1	y	0.71	5	2	5	2	y	0.62	5	3	5	3	y	0.83	5	1	5	1	y	0.60	3	2	3	2	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000059743.13	Fdps	chr3	protein_coding	farnesyl diphosphate synthetase
novel_NIR_12687	chr3	89008138	89008988	-	89008138	89009063	A5SS	ENSMUST00000199668.3	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.75	3	1	3	1	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000059743.13	Fdps	chr3	protein_coding	farnesyl diphosphate synthetase
novel_NIR_12688	chr3	89008443	89009063	-	89008138	89009063	A3SS	ENSMUST00000199668.3	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000059743.13	Fdps	chr3	protein_coding	farnesyl diphosphate synthetase
novel_NIR_12689	chr3	89044713	89048158	+	89044713;89044993	89044916;89048158	ES	ENSMUST00000148097.2	novel	0.67	1	0.5	1	1;0	n	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	0.00	0	1.5	0	3;0	n	0.67	1	0.5	1	1;0	n	-	-	-	-	-	-	0.00	0	1.0	0	2;0	n	0.67	1	0.5	1	1;0	n	-	-	-	-	-	-	0.91	5	0.5	5	1;0	y	0.67	3	1.5	3	1;2	y	0.00	0	0.5	0	1;0	n	ENSMUSG00000041237.13	Pklr	chr3	protein_coding	pyruvate kinase liver and red blood cell
novel_NIR_12690	chr3	89044993	89048622	+	89044993	89048158	3pMXE	ENSMUST00000148097.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	ENSMUSG00000041237.13	Pklr	chr3	protein_coding	pyruvate kinase liver and red blood cell
novel_NIR_12691	chr3	89087463	89089215	-	89088220	89089215	3pMXE	ENSMUST00000131146.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000086718.2	Gm16069	chr3	lncRNA	predicted gene 16069
novel_NIR_12692	chr3	89116966	89117359	-	89116966	89117339	A5SS	ENSMUST00000138249.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000064068.16	Mtx1	chr3	protein_coding	metaxin 1
novel_NIR_12693	chr3	89116966	89117359	-	89116966	89117573	A5SS	ENSMUST00000173593.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000064068.16	Mtx1	chr3	protein_coding	metaxin 1
novel_NIR_12694	chr3	89153822	89154088	+	89153900	89154088	A5SS	ENSMUST00000168900.3	novel	0.22	4	14	4	14	y	0.76	16	5	16	5	y	0.65	37	20	37	20	y	0.53	9	8	9	8	y	0.57	21	16	21	16	y	0.53	17	15	17	15	y	0.54	13	11	13	11	y	0.50	15	15	15	15	y	0.50	10	10	10	10	y	1.00	17	0	17	0	y	0.57	17	13	17	13	y	0.53	10	9	10	9	y	ENSMUSG00000042747.13	Krtcap2	chr3	protein_coding	keratinocyte associated protein 2
novel_NIR_12695	chr3	89153900	89154085	+	89153900	89154088	A3SS	ENSMUST00000168900.3	novel	0.74	40	14	40	14	y	0.88	37	5	37	5	y	0.80	79	20	79	20	y	0.78	29	8	29	8	y	0.72	41	16	41	16	y	0.71	37	15	37	15	y	0.78	40	11	40	11	y	0.71	37	15	37	15	y	0.79	37	10	37	10	y	1.00	26	0	26	0	y	0.79	49	13	49	13	y	0.76	29	9	29	9	y	ENSMUSG00000042747.13	Krtcap2	chr3	protein_coding	keratinocyte associated protein 2
novel_NIR_12696	chr3	89175889	89175980	-	89175905	89175980	A3SS	ENSMUST00000185119.8	novel	0.17	4	20	4	20	y	0.00	0	16	0	16	n	0.09	3	32	3	32	n	0.05	1	20	1	20	n	0.00	0	53	0	53	n	0.00	0	16	0	16	n	0.08	5	59	5	59	n	0.00	0	17	0	17	n	0.05	1	20	1	20	n	0.08	2	24	2	24	n	0.00	0	31	0	31	n	0.09	3	32	3	32	n	ENSMUSG00000027953.14	Slc50a1	chr3	protein_coding	solute carrier family 50 (sugar transporter), member 1
novel_NIR_12697	chr3	89177446	89177566	-	89177446	89177778	A5SS	ENSMUST00000148095.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027953.14	Slc50a1	chr3	protein_coding	solute carrier family 50 (sugar transporter), member 1
novel_NIR_12698	chr3	89177446	89177566	-	89177446	89177823	A5SS	ENSMUST00000130230.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027953.14	Slc50a1	chr3	protein_coding	solute carrier family 50 (sugar transporter), member 1
novel_NIR_12699	chr3	89177446	89177712	-	89177446	89177693	A5SS	ENSMUST00000185119.8	novel	0.12	2	15	2	15	n	0.00	0	10	0	10	n	0.00	0	26	0	26	n	0.16	3	16	3	16	y	0.00	0	41	0	41	n	0.05	1	18	1	18	n	0.00	0	22	0	22	n	0.00	0	13	0	13	n	0.00	0	13	0	13	n	0.00	0	17	0	17	n	0.00	0	20	0	20	n	0.00	0	10	0	10	n	ENSMUSG00000027953.14	Slc50a1	chr3	protein_coding	solute carrier family 50 (sugar transporter), member 1
novel_NIR_12700	chr3	89177446	89177712	-	89177446	89177778	A5SS	ENSMUST00000148095.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027953.14	Slc50a1	chr3	protein_coding	solute carrier family 50 (sugar transporter), member 1
novel_NIR_12701	chr3	89177446	89177712	-	89177446	89177823	A5SS	ENSMUST00000130230.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027953.14	Slc50a1	chr3	protein_coding	solute carrier family 50 (sugar transporter), member 1
novel_NIR_12702	chr3	89177446	89179311	-	89177446	89177693	5pMXE	ENSMUST00000185119.8	novel	0.06	1	15	1	15	n	0.09	1	10	1	10	n	0.00	0	26	0	26	n	0.00	0	16	0	16	n	0.05	2	41	2	41	n	0.00	0	18	0	18	n	0.04	1	22	1	22	n	0.00	0	13	0	13	n	0.19	3	13	3	13	y	0.06	1	17	1	17	n	0.00	0	20	0	20	n	0.23	3	10	3	10	y	ENSMUSG00000027953.14	Slc50a1	chr3	protein_coding	solute carrier family 50 (sugar transporter), member 1
novel_NIR_12703	chr3	89177446	89179311	-	89177446	89177778	5pMXE	ENSMUST00000148095.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	3	0	3	0	y	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000027953.14	Slc50a1	chr3	protein_coding	solute carrier family 50 (sugar transporter), member 1
novel_NIR_12704	chr3	89177446	89179311	-	89177446	89177823	5pMXE	ENSMUST00000130230.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.75	3	1	3	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000027953.14	Slc50a1	chr3	protein_coding	solute carrier family 50 (sugar transporter), member 1
novel_NIR_12705	chr3	89180129	89180286	-	89180129	89183437	A5SS	ENSMUST00000118860.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.88	7	1	7	1	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000027954.10	Efna1	chr3	protein_coding	ephrin A1
novel_NIR_12706	chr3	89180309	89183437	-	89180129	89183437	A3SS	ENSMUST00000118860.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027954.10	Efna1	chr3	protein_coding	ephrin A1
novel_NIR_12707	chr3	89183732	89184534	-	89183732	89188100	A5SS	ENSMUST00000118587.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027954.10	Efna1	chr3	protein_coding	ephrin A1
novel_NIR_12708	chr3	89183732	89185019	-	89183732	89188100	A5SS	ENSMUST00000118587.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027954.10	Efna1	chr3	protein_coding	ephrin A1
novel_NIR_12709	chr3	89223428	89225135	+	89223918	89225135	A5SS	ENSMUST00000135144.2	novel	0.00	0	8	0	8	n	0.08	1	11	1	11	n	0.17	14	68	14	68	y	0.00	0	17	0	17	n	0.33	7	14	7	14	y	0.05	1	18	1	18	n	0.06	1	15	1	15	n	0.19	3	13	3	13	y	0.00	0	8	0	8	n	0.00	0	24	0	24	n	0.09	1	10	1	10	n	0.00	0	22	0	22	n	ENSMUSG00000086389.2	Gm15998	chr3	lncRNA	predicted gene 15998
novel_NIR_12710	chr3	89299609;89304737	89304580;89305266	+	89299609	89305266	cassetteExon	ENSMUST00000152143.2	novel	0.07	0.5	7	0;1	7	n	0.00	0.0	1	0;0	1	n	0.30	3.5	8	0;7	8	n	0.27	1.5	4	0;3	4	n	0.37	3.5	6	3;4	6	y	0.20	2.0	8	0;4	8	n	0.22	5.5	19	4;7	19	y	0.07	0.5	7	0;1	7	n	0.00	0.0	5	0;0	5	n	0.24	2.5	8	0;5	8	n	0.46	6.0	7	0;12	7	n	0.47	3.5	4	0;7	4	n	ENSMUSG00000074466.13	Gm15417	chr3	lncRNA	predicted gene 15417
novel_NIR_12711	chr3	89299813	89304580	+	89299813	89305266	A3SS	ENSMUST00000145400.8	novel	0.28	7	18	7	18	n	0.00	0	30	0	30	n	0.23	21	69	21	69	n	0.38	6	10	6	10	n	0.00	0	46	0	46	n	0.10	4	36	4	36	n	0.23	11	37	11	37	n	0.00	0	25	0	25	n	0.50	5	5	5	5	y	0.14	7	43	7	43	n	0.24	8	26	8	26	n	0.26	7	20	7	20	n	ENSMUSG00000074466.13	Gm15417	chr3	lncRNA	predicted gene 15417
novel_NIR_12712	chr3	89299813;89304737	89304580;89305266	+	89299813	89305266	cassetteExon	ENSMUST00000145400.8	novel	0.18	4.0	18	7;1	18	n	0.00	0.0	30	0;0	30	n	0.17	14.0	69	21;7	69	y	0.31	4.5	10	6;3	10	y	0.04	2.0	46	0;4	46	n	0.10	4.0	36	4;4	36	n	0.20	9.0	37	11;7	37	y	0.02	0.5	25	0;1	25	n	0.33	2.5	5	5;0	5	n	0.12	6.0	43	7;5	43	n	0.28	10.0	26	8;12	26	y	0.26	7.0	20	7;7	20	y	ENSMUSG00000074466.13	Gm15417	chr3	lncRNA	predicted gene 15417
novel_NIR_12713	chr3	89300442	89300601	-	89300442	89300618	A5SS	ENSMUST00000148361.8	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.25	2	6	2	6	y	0.00	0	2	0	2	n	0.00	0	6	0	6	n	ENSMUSG00000028042.16	Zbtb7b	chr3	protein_coding	zinc finger and BTB domain containing 7B
novel_NIR_12714	chr3	89300442	89300601	-	89300442	89300784	A5SS	ENSMUST00000124783.8	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	7	0	7	n	0.29	2	5	2	5	y	0.00	0	5	0	5	n	0.00	0	3	0	3	n	ENSMUSG00000028042.16	Zbtb7b	chr3	protein_coding	zinc finger and BTB domain containing 7B
novel_NIR_12715	chr3	89300442	89300601	-	89300442	89300921	A5SS	ENSMUST00000126027.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000028042.16	Zbtb7b	chr3	protein_coding	zinc finger and BTB domain containing 7B
novel_NIR_12716	chr3	89300442	89300601	-	89300442	89301098	A5SS	ENSMUST00000139094.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000028042.16	Zbtb7b	chr3	protein_coding	zinc finger and BTB domain containing 7B
novel_NIR_12717	chr3	89301700	89304580	+	89301700	89305266	A3SS	ENSMUST00000126926.2	novel	0.00	0	21	0	21	n	0.22	5	18	5	18	y	0.10	1	9	1	9	n	0.10	2	19	2	19	n	0.24	5	16	5	16	n	0.56	5	4	5	4	n	0.25	7	21	7	21	n	0.00	0	11	0	11	n	0.10	2	18	2	18	n	0.43	10	13	10	13	n	0.29	7	17	7	17	n	0.13	2	13	2	13	n	ENSMUSG00000074466.13	Gm15417	chr3	lncRNA	predicted gene 15417
novel_NIR_12718	chr3	89301700;89304737	89304580;89305266	+	89301700	89305266	cassetteExon	ENSMUST00000126926.2	novel	0.02	0.5	21	0;1	21	n	0.12	2.5	18	5;0	18	n	0.31	4.0	9	1;7	9	n	0.12	2.5	19	2;3	19	n	0.22	4.5	16	5;4	16	y	0.53	4.5	4	5;4	4	y	0.25	7.0	21	7;7	21	y	0.04	0.5	11	0;1	11	n	0.05	1.0	18	2;0	18	n	0.37	7.5	13	10;5	13	y	0.36	9.5	17	7;12	17	y	0.26	4.5	13	2;7	13	y	ENSMUSG00000074466.13	Gm15417	chr3	lncRNA	predicted gene 15417
novel_NIR_12719	chr3	89303169	89305266	+	89299609	89305266	A5SS	ENSMUST00000152143.2	novel	0.42	5	7	5	7	y	0.86	6	1	6	1	y	0.11	1	8	1	8	n	0.50	4	4	4	4	y	0.65	11	6	11	6	y	0.27	3	8	3	8	y	0.30	8	19	8	19	y	0.12	1	7	1	7	n	0.75	15	5	15	5	y	0.58	11	8	11	8	y	0.68	15	7	15	7	y	0.78	14	4	14	4	y	ENSMUSG00000074466.13	Gm15417	chr3	lncRNA	predicted gene 15417
novel_NIR_12720	chr3	89303169	89305266	+	89299813	89305266	A5SS	ENSMUST00000145400.8	novel	0.22	5	18	5	18	y	0.17	6	30	6	30	y	0.01	1	69	1	69	n	0.29	4	10	4	10	y	0.19	11	46	11	46	y	0.08	3	36	3	36	n	0.18	8	37	8	37	y	0.04	1	25	1	25	n	0.75	15	5	15	5	y	0.20	11	43	11	43	y	0.37	15	26	15	26	y	0.41	14	20	14	20	y	ENSMUSG00000074466.13	Gm15417	chr3	lncRNA	predicted gene 15417
novel_NIR_12721	chr3	89303169	89305266	+	89301700	89305266	A5SS	ENSMUST00000126926.2	novel	0.19	5	21	5	21	y	0.25	6	18	6	18	y	0.10	1	9	1	9	n	0.17	4	19	4	19	y	0.41	11	16	11	16	y	0.43	3	4	3	4	y	0.28	8	21	8	21	y	0.08	1	11	1	11	n	0.45	15	18	15	18	y	0.46	11	13	11	13	y	0.47	15	17	15	17	y	0.52	14	13	14	13	y	ENSMUSG00000074466.13	Gm15417	chr3	lncRNA	predicted gene 15417
novel_NIR_12722	chr3	89303169	89305266	+	89303389	89305266	5pMXE	ENSMUST00000153969.2	novel	0.25	5	15	5	15	y	0.43	6	8	6	8	y	0.12	1	7	1	7	n	0.15	4	23	4	23	y	0.31	11	25	11	25	y	0.33	3	6	3	6	y	0.26	8	23	8	23	y	0.14	1	6	1	6	n	0.35	15	28	15	28	y	0.29	11	27	11	27	y	0.37	15	26	15	26	y	0.40	14	21	14	21	y	ENSMUSG00000074466.13	Gm15417	chr3	lncRNA	predicted gene 15417
novel_NIR_12723	chr3	89303389	89304580	+	89303389	89305266	A3SS	ENSMUST00000153969.2	novel	0.32	7	15	7	15	n	0.58	11	8	11	8	y	0.00	0	7	0	7	n	0.15	4	23	4	23	n	0.24	8	25	8	25	n	0.25	2	6	2	6	n	0.08	2	23	2	23	n	0.00	0	6	0	6	n	0.38	17	28	17	28	y	0.27	10	27	10	27	n	0.24	8	26	8	26	n	0.32	10	21	10	21	n	ENSMUSG00000074466.13	Gm15417	chr3	lncRNA	predicted gene 15417
novel_NIR_12724	chr3	89303389;89304737	89304580;89305266	+	89303389	89305266	cassetteExon	ENSMUST00000153969.2	novel	0.21	4.0	15	7;1	15	n	0.41	5.5	8	11;0	8	n	0.33	3.5	7	0;7	7	n	0.13	3.5	23	4;3	23	n	0.19	6.0	25	8;4	25	y	0.33	3.0	6	2;4	6	y	0.16	4.5	23	2;7	23	y	0.08	0.5	6	0;1	6	n	0.23	8.5	28	17;0	28	n	0.22	7.5	27	10;5	27	y	0.28	10.0	26	8;12	26	y	0.29	8.5	21	10;7	21	y	ENSMUSG00000074466.13	Gm15417	chr3	lncRNA	predicted gene 15417
novel_NIR_12725	chr3	89304737	89305266	+	89299609	89305266	A5SS	ENSMUST00000152143.2	novel	0.12	1	7	1	7	n	0.00	0	1	0	1	n	0.47	7	8	7	8	y	0.43	3	4	3	4	y	0.40	4	6	4	6	n	0.33	4	8	4	8	y	0.27	7	19	7	19	n	0.12	1	7	1	7	n	0.00	0	5	0	5	n	0.38	5	8	5	8	y	0.63	12	7	12	7	y	0.64	7	4	7	4	y	ENSMUSG00000074466.13	Gm15417	chr3	lncRNA	predicted gene 15417
novel_NIR_12726	chr3	89304737	89305266	+	89303389	89305266	A5SS	ENSMUST00000153969.2	novel	0.06	1	15	1	15	n	0.00	0	8	0	8	n	0.50	7	7	7	7	y	0.12	3	23	3	23	n	0.14	4	25	4	25	n	0.40	4	6	4	6	n	0.23	7	23	7	23	n	0.14	1	6	1	6	n	0.00	0	28	0	28	n	0.16	5	27	5	27	n	0.32	12	26	12	26	n	0.25	7	21	7	21	n	ENSMUSG00000074466.13	Gm15417	chr3	lncRNA	predicted gene 15417
novel_NIR_12727	chr3	89309619	89309707	-	89309619	89310477	A5SS	ENSMUST00000050398.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000042642.14	Flad1	chr3	protein_coding	flavin adenine dinucleotide synthetase 1
novel_NIR_12728	chr3	89326016	89326755	+	89326016	89330233	A3SS	ENSMUST00000125036.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	ENSMUSG00000042626.14	Shc1	chr3	protein_coding	src homology 2 domain-containing transforming protein C1
novel_NIR_12729	chr3	89368778	89369189	+	89367193	89369189	A5SS	ENSMUST00000184515.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027952.17	Pmvk	chr3	protein_coding	phosphomevalonate kinase
novel_NIR_12730	chr3	89638145	89643431	+	89638145	89645297	A3SS	ENSMUST00000121094.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000027951.17	Adar	chr3	protein_coding	adenosine deaminase, RNA-specific
novel_NIR_12731	chr3	89741032	89741451	+	89739410	89741451	A5SS	ENSMUST00000050401.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000046280.10	She	chr3	protein_coding	src homology 2 domain-containing transforming protein E
novel_NIR_12732	chr3	89852450	89852789	-	89852527	89852789	A3SS	ENSMUST00000069805.14	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	7	0	7	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	ENSMUSG00000060671.13	Atp8b2	chr3	protein_coding	ATPase, class I, type 8B, member 2
novel_NIR_12733	chr3	89903605	89905045	-	89903605	89905109	A5SS	ENSMUST00000197786.5	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.20	1	4	1	4	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000027944.14	Hax1	chr3	protein_coding	HCLS1 associated X-1
novel_NIR_12734	chr3	89904881	89905109	-	89903605	89905109	A3SS	ENSMUST00000197786.5	novel	0.67	2	1	2	1	y	1.00	1	0	1	0	n	1.00	8	0	8	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.67	4	2	4	2	y	0.75	3	1	3	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	4	0	4	n	1.00	2	0	2	0	y	0.00	0	4	0	4	n	ENSMUSG00000027944.14	Hax1	chr3	protein_coding	HCLS1 associated X-1
novel_NIR_12735	chr3	89904881	89905109	-	89904881	89905835	A5SS	ENSMUST00000197725.5	novel	1.00	2	0	2	0	n	1.00	1	0	1	0	n	1.00	8	0	8	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	3	0	3	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	n	-	-	-	-	-	-	ENSMUSG00000027944.14	Hax1	chr3	protein_coding	HCLS1 associated X-1
novel_NIR_12736	chr3	89904881;89905287	89905109;89905835	-	89904881	89905835	cassetteExon	ENSMUST00000197725.5	novel	1.00	3.0	0	2;4	0	y	1.00	8.5	0	1;16	0	n	1.00	11.0	0	8;14	0	y	1.00	4.5	0	1;8	0	n	1.00	1.5	0	0;3	0	n	1.00	2.0	0	4;0	0	n	1.00	1.5	0	3;0	0	n	1.00	1.0	0	0;2	0	n	1.00	3.0	0	1;5	0	n	1.00	5.5	0	0;11	0	n	1.00	2.0	0	2;2	0	y	1.00	6.0	0	0;12	0	n	ENSMUSG00000027944.14	Hax1	chr3	protein_coding	HCLS1 associated X-1
novel_NIR_12737	chr3	89904881;89905304	89905109;89905835	-	89904881	89905835	cassetteExon	ENSMUST00000197725.5	novel	1.00	1.0	0	2;0	0	n	1.00	0.5	0	1;0	0	n	1.00	4.0	0	8;0	0	n	1.00	1.5	0	1;2	0	n	-	-	-	-	-	-	1.00	2.0	0	4;0	0	n	1.00	4.0	0	3;5	0	y	-	-	-	-	-	-	1.00	0.5	0	1;0	0	n	-	-	-	-	-	-	1.00	1.0	0	2;0	0	n	-	-	-	-	-	-	ENSMUSG00000027944.14	Hax1	chr3	protein_coding	HCLS1 associated X-1
novel_NIR_12738	chr3	89905287	89905835	-	89904881	89905835	A3SS	ENSMUST00000197725.5	novel	1.00	4	0	4	0	n	1.00	16	0	16	0	n	1.00	14	0	14	0	n	1.00	8	0	8	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	5	0	5	0	n	1.00	11	0	11	0	n	1.00	2	0	2	0	n	1.00	12	0	12	0	y	ENSMUSG00000027944.14	Hax1	chr3	protein_coding	HCLS1 associated X-1
novel_NIR_12739	chr3	89905287	89905835	-	89905410	89905835	A3SS	ENSMUST00000199163.2	novel	0.25	4	12	4	12	y	0.59	16	11	16	11	y	0.67	14	7	14	7	y	0.53	8	7	8	7	y	0.20	3	12	3	12	y	0.00	0	14	0	14	n	0.00	0	2	0	2	n	0.17	2	10	2	10	y	0.56	5	4	5	4	y	0.65	11	6	11	6	y	0.22	2	7	2	7	y	0.71	12	5	12	5	y	ENSMUSG00000027944.14	Hax1	chr3	protein_coding	HCLS1 associated X-1
novel_NIR_12740	chr3	89905304	89905835	-	89905410	89905835	A3SS	ENSMUST00000199163.2	novel	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.22	2	7	2	7	y	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.71	5	2	5	2	y	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	ENSMUSG00000027944.14	Hax1	chr3	protein_coding	HCLS1 associated X-1
novel_NIR_12741	chr3	89905310	89905826	-	89905310	89905632	5pMXE	ENSMUST00000198782.2	novel	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	36	0	36	n	0.00	0	10	0	10	n	0.00	0	36	0	36	n	0.00	0	20	0	20	n	0.00	0	24	0	24	n	0.00	0	18	0	18	n	0.00	0	12	0	12	n	0.00	0	21	0	21	n	0.00	0	14	0	14	n	0.18	3	14	3	14	y	ENSMUSG00000027944.14	Hax1	chr3	protein_coding	HCLS1 associated X-1
novel_NIR_12742	chr3	89905962	89909586	-	89907560	89909586	3pMXE	ENSMUST00000198322.5	novel	0.00	0	19	0	19	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	1	0	1	n	0.29	5	12	5	12	y	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	16	0	16	n	0.00	0	23	0	23	n	0.38	5	8	5	8	y	ENSMUSG00000042520.17	Ubap2l	chr3	protein_coding	ubiquitin-associated protein 2-like
novel_NIR_12743	chr3	89905962	89909586	-	89908298	89909586	3pMXE	ENSMUST00000064639.15	novel	0.00	0	22	0	22	n	0.00	0	28	0	28	n	0.00	0	35	0	35	n	0.00	0	27	0	27	n	0.00	0	41	0	41	n	0.00	0	13	0	13	n	0.11	5	40	5	40	n	0.00	0	16	0	16	n	0.00	0	30	0	30	n	0.00	0	32	0	32	n	0.00	0	37	0	37	n	0.18	5	23	5	23	y	ENSMUSG00000042520.17	Ubap2l	chr3	protein_coding	ubiquitin-associated protein 2-like
novel_NIR_12744	chr3	89955206	89956127	-	89955206	89959336	A5SS	ENSMUST00000196633.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000042520.17	Ubap2l	chr3	protein_coding	ubiquitin-associated protein 2-like
novel_NIR_12745	chr3	89955206	89956127	-	89955206	89959612	A5SS	ENSMUST00000196568.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000042520.17	Ubap2l	chr3	protein_coding	ubiquitin-associated protein 2-like
novel_NIR_12746	chr3	89955206	89956127	-	89955206	89959697	A5SS	ENSMUST00000198322.5	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.50	1	1	1	1	n	0.27	3	8	3	8	y	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	4	0	4	n	-	-	-	-	-	-	ENSMUSG00000042520.17	Ubap2l	chr3	protein_coding	ubiquitin-associated protein 2-like
novel_NIR_12747	chr3	89955206	89956127	-	89955206	89959762	A5SS	ENSMUST00000196843.5	novel	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.20	1	4	1	4	n	0.33	3	6	3	6	y	0.11	1	8	1	8	n	0.00	0	3	0	3	n	0.29	2	5	2	5	y	0.00	0	4	0	4	n	0.00	0	10	0	10	n	ENSMUSG00000042520.17	Ubap2l	chr3	protein_coding	ubiquitin-associated protein 2-like
novel_NIR_12748	chr3	89955206	89956127	-	89955206	89959891	A5SS	ENSMUST00000197903.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000042520.17	Ubap2l	chr3	protein_coding	ubiquitin-associated protein 2-like
novel_NIR_12749	chr3	89969038	89970516	+	89969239	89970516	A5SS	ENSMUST00000239076.2	novel	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.08	1	11	1	11	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.29	4	10	4	10	y	0.00	0	5	0	5	n	0.00	0	11	0	11	n	ENSMUSG00000118504.2	Gm53012	chr3	protein_coding	predicted gene, 53012
novel_NIR_12750	chr3	89969038	89970516	+	89970190	89970516	5pMXE	ENSMUST00000238911.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000118506.2	1700094D03Rik	chr3	protein_coding	RIKEN cDNA 1700094D03 gene
novel_NIR_12751	chr3	89969425	89970516	+	89969239	89970516	A5SS	ENSMUST00000239076.2	novel	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.10	1	9	1	9	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.33	2	4	2	4	y	0.17	2	10	2	10	y	0.00	0	5	0	5	n	0.08	1	11	1	11	n	ENSMUSG00000118504.2	Gm53012	chr3	protein_coding	predicted gene, 53012
novel_NIR_12752	chr3	89969425	89970516	+	89970190	89970516	5pMXE	ENSMUST00000238911.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000118506.2	1700094D03Rik	chr3	protein_coding	RIKEN cDNA 1700094D03 gene
novel_NIR_12753	chr3	90120608	90120874	-	90120608	90120688	A5SS&ES	ENSMUST00000195998.5	novel	0.08	1	12	1	12	n	0.22	2	7	2	7	y	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.33	3	6	3	6	y	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.17	2	10	2	10	y	0.00	0	12	0	12	n	ENSMUSG00000090733.7	Rps27	chr3	protein_coding	ribosomal protein S27
novel_NIR_12754	chr3	90120608	90120899	-	90120608	90120688	A5SS&ES	ENSMUST00000195998.5	novel	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	1	0	1	n	0.38	3	5	3	5	y	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	ENSMUSG00000090733.7	Rps27	chr3	protein_coding	ribosomal protein S27
novel_NIR_12755	chr3	90120834	90120917	-	90120800	90120917	A3SS	ENSMUST00000195998.5	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000090733.7	Rps27	chr3	protein_coding	ribosomal protein S27
novel_NIR_12756	chr3	90120834	90120917	-	90120805	90120917	A3SS	ENSMUST00000197028.5	novel	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	ENSMUSG00000090733.7	Rps27	chr3	protein_coding	ribosomal protein S27
novel_NIR_12757	chr3	90141309	90141747	+	90141309	90142604	A3SS	ENSMUST00000119304.2	novel	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.38	3	5	3	5	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	8	0	8	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000027937.16	Jtb	chr3	protein_coding	jumping translocation breakpoint
novel_NIR_12758	chr3	90141309	90141747	+	90141309	90142691	A3SS	ENSMUST00000157045.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000027937.16	Jtb	chr3	protein_coding	jumping translocation breakpoint
novel_NIR_12759	chr3	90162188	90164424	+	90161865	90164424	A5SS	ENSMUST00000029545.15	novel	0.02	1	42	1	42	n	0.00	0	19	0	19	n	0.00	0	37	0	37	n	0.17	6	29	6	29	y	0.04	1	25	1	25	n	0.05	1	18	1	18	n	0.21	8	30	8	30	y	0.00	0	21	0	21	n	0.14	4	25	4	25	n	0.14	6	37	6	37	n	0.06	3	44	3	44	n	0.05	2	38	2	38	n	ENSMUSG00000027936.19	Crtc2	chr3	protein_coding	CREB regulated transcription coactivator 2
novel_NIR_12760	chr3	90164525	90166693	+	90161865	90166693	A5SS	ENSMUST00000136970.8	novel	0.00	0	1	0	1	n	0.60	3	2	3	2	y	0.50	2	2	2	2	y	0.50	1	1	1	1	n	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.44	4	5	4	5	y	0.00	0	1	0	1	n	0.50	4	4	4	4	y	ENSMUSG00000027936.19	Crtc2	chr3	protein_coding	CREB regulated transcription coactivator 2
novel_NIR_12761	chr3	90165833	90166693	+	90161865	90166693	A5SS	ENSMUST00000136970.8	novel	0.50	1	1	1	1	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.80	4	1	4	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.50	2	2	2	2	y	0.50	1	1	1	1	n	0.00	0	5	0	5	n	0.75	3	1	3	1	y	0.00	0	4	0	4	n	ENSMUSG00000027936.19	Crtc2	chr3	protein_coding	CREB regulated transcription coactivator 2
novel_NIR_12762	chr3	9018859	9028911	-	9018859	9023251	A5SS&ES	ENSMUST00000129736.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027506.16	Tpd52	chr3	protein_coding	tumor protein D52
novel_NIR_12763	chr3	9018859	9028911	-	9018859	9027143	5pMXE	ENSMUST00000145905.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027506.16	Tpd52	chr3	protein_coding	tumor protein D52
novel_NIR_12764	chr3	9018859	9028911	-	9018859	9028907	A5SS	ENSMUST00000091354.12	novel	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.19	6	25	6	25	y	0.25	1	3	1	3	n	0.57	4	3	4	3	y	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000027506.16	Tpd52	chr3	protein_coding	tumor protein D52
novel_NIR_12765	chr3	9018859	9028911	-	9018859	9053418	A5SS	ENSMUST00000124956.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027506.16	Tpd52	chr3	protein_coding	tumor protein D52
novel_NIR_12766	chr3	9018859	9028911	-	9018859	9058801	A5SS	ENSMUST00000121038.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	0.50	1	1	1	1	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027506.16	Tpd52	chr3	protein_coding	tumor protein D52
novel_NIR_12767	chr3	9018859	9028911	-	9018859	9068340	A5SS	ENSMUST00000155450.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027506.16	Tpd52	chr3	protein_coding	tumor protein D52
novel_NIR_12768	chr3	9018859	9028911	-	9018859	9068348	A5SS	ENSMUST00000134788.8	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.67	6	3	6	3	y	1.00	1	0	1	0	n	0.80	4	1	4	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027506.16	Tpd52	chr3	protein_coding	tumor protein D52
novel_NIR_12769	chr3	90366802	90367240	-	90366704	90367240	A3SS	ENSMUST00000029540.13	novel	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.22	2	7	2	7	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.10	1	9	1	9	n	0.00	0	17	0	17	n	ENSMUSG00000027931.13	Npr1	chr3	protein_coding	natriuretic peptide receptor 1
novel_NIR_12770	chr3	90366802	90367240	-	90366802	90368397	A5SS	ENSMUST00000124760.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000027931.13	Npr1	chr3	protein_coding	natriuretic peptide receptor 1
novel_NIR_12771	chr3	90407414	90407688	-	90407414	90410403	A5SS	ENSMUST00000107343.8	novel	0.18	2	9	2	9	y	0.40	2	3	2	3	y	0.36	5	9	5	9	y	0.00	0	7	0	7	n	0.58	7	5	7	5	y	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.50	1	1	1	1	n	0.27	4	11	4	11	y	ENSMUSG00000001017.16	Chtop	chr3	protein_coding	chromatin target of PRMT1
novel_NIR_12772	chr3	90414933	90416079	-	90414933	90416081	A5SS	ENSMUST00000131868.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.33	1	2	1	2	n	-	-	-	-	-	-	ENSMUSG00000001017.16	Chtop	chr3	protein_coding	chromatin target of PRMT1
novel_NIR_12773	chr3	90414933	90416124	-	90414933	90416081	A5SS	ENSMUST00000131868.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	ENSMUSG00000001017.16	Chtop	chr3	protein_coding	chromatin target of PRMT1
novel_NIR_12774	chr3	90421772	90422068	+	90421772	90422065	A3SS	ENSMUST00000048138.8	novel	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.25	1	3	1	3	n	1.00	1	0	1	0	n	0.40	2	3	2	3	y	1.00	2	0	2	0	y	0.50	1	1	1	1	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000042312.11	S100a13	chr3	protein_coding	S100 calcium binding protein A13
novel_NIR_12775	chr3	90444724	90446194	+	90444724	90449307	A3SS	ENSMUST00000107335.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.08	1	11	1	11	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	7	0	7	0	y	ENSMUSG00000074457.11	S100a16	chr3	protein_coding	S100 calcium binding protein A16
novel_NIR_12776	chr3	90444724	90446194	+	90444724	90449672	A3SS	ENSMUST00000127008.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	7	0	7	0	y	ENSMUSG00000074457.11	S100a16	chr3	protein_coding	S100 calcium binding protein A16
novel_NIR_12777	chr3	90444724	90446597	+	90444724	90449307	A3SS	ENSMUST00000107335.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.15	2	11	2	11	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000074457.11	S100a16	chr3	protein_coding	S100 calcium binding protein A16
novel_NIR_12778	chr3	90444724	90446597	+	90444724	90449672	A3SS	ENSMUST00000127008.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000074457.11	S100a16	chr3	protein_coding	S100 calcium binding protein A16
novel_NIR_12779	chr3	90446328	90446597	+	90446328	90449301	A3SS	ENSMUST00000107334.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.67	2	1	2	1	y	0.50	1	1	1	1	n	ENSMUSG00000074457.11	S100a16	chr3	protein_coding	S100 calcium binding protein A16
novel_NIR_12780	chr3	90446328	90446656	+	90446328	90449301	A3SS	ENSMUST00000107334.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	ENSMUSG00000074457.11	S100a16	chr3	protein_coding	S100 calcium binding protein A16
novel_NIR_12781	chr3	9068458	9069465	-	9023394	9069465	A3SS	ENSMUST00000129736.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027506.16	Tpd52	chr3	protein_coding	tumor protein D52
novel_NIR_12782	chr3	9068458	9069465	-	9068494	9069465	A3SS	ENSMUST00000134788.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000027506.16	Tpd52	chr3	protein_coding	tumor protein D52
novel_NIR_12783	chr3	94290958	94294428	+	94284910	94294428	A5SS	ENSMUST00000197040.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000028150.15	Rorc	chr3	protein_coding	RAR-related orphan receptor gamma
novel_NIR_12784	chr3	94290958	94294428	+	94291631	94294428	A5SS&ES	ENSMUST00000200009.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000028150.15	Rorc	chr3	protein_coding	RAR-related orphan receptor gamma
novel_NIR_12785	chr3	94293185	94294428	+	94284910	94294428	A5SS	ENSMUST00000197040.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028150.15	Rorc	chr3	protein_coding	RAR-related orphan receptor gamma
novel_NIR_12786	chr3	94293185	94294428	+	94291631	94294428	A5SS	ENSMUST00000200009.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028150.15	Rorc	chr3	protein_coding	RAR-related orphan receptor gamma
novel_NIR_12787	chr3	94296903	94300338	+	94296903	94304499	A3SS	ENSMUST00000200009.2	novel	0.00	0	2	0	2	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000028150.15	Rorc	chr3	protein_coding	RAR-related orphan receptor gamma
novel_NIR_12788	chr3	94354650	94356491	+	94354650	94357458	A3SS	ENSMUST00000196143.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000028140.14	Mrpl9	chr3	protein_coding	mitochondrial ribosomal protein L9
novel_NIR_12789	chr3	94374781	94379470	-	94374238	94379470	A3SS	ENSMUST00000029785.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000028139.6	Riiad1	chr3	protein_coding	regulatory subunit of type II PKA R-subunit (RIIa) domain containing 1
novel_NIR_12790	chr3	94374781	94379470	-	94375139	94379470	3pMXE	ENSMUST00000184619.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028139.6	Riiad1	chr3	protein_coding	regulatory subunit of type II PKA R-subunit (RIIa) domain containing 1
novel_NIR_12791	chr3	94604411;94604761	94604623;94605350	+	94604411	94605350	cassetteExon	ENSMUST00000173849.8	novel	0.37	20.0	34	36;4	34	y	0.18	1.5	7	0;3	7	n	0.00	0.0	1	0;0	1	n	0.00	0.0	56	0;0	56	n	0.00	0.0	17	0;0	17	n	-	-	-	-	-	-	0.00	0.0	7	0;0	7	n	0.00	0.0	3	0;0	3	n	0.39	18.5	29	33;4	29	y	0.00	0.0	9	0;0	9	n	0.00	0.0	20	0;0	20	n	0.00	0.0	23	0;0	23	n	ENSMUSG00000068877.13	Selenbp2	chr3	protein_coding	selenium binding protein 2
novel_NIR_12792	chr3	94604411;94604761	94604645;94605350	+	94604411	94605350	cassetteExon	ENSMUST00000173849.8	novel	0.39	22.0	34	40;4	34	y	0.18	1.5	7	0;3	7	n	0.00	0.0	1	0;0	1	n	0.00	0.0	56	0;0	56	n	0.00	0.0	17	0;0	17	n	-	-	-	-	-	-	0.00	0.0	7	0;0	7	n	0.00	0.0	3	0;0	3	n	0.06	2.0	29	0;4	29	n	0.00	0.0	9	0;0	9	n	0.00	0.0	20	0;0	20	n	0.00	0.0	23	0;0	23	n	ENSMUSG00000068877.13	Selenbp2	chr3	protein_coding	selenium binding protein 2
novel_NIR_12793	chr3	94604761	94605350	+	94604157	94605350	A5SS	ENSMUST00000174377.2	novel	1.00	4	0	4	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000068877.13	Selenbp2	chr3	protein_coding	selenium binding protein 2
novel_NIR_12794	chr3	94604761	94605350	+	94604411	94605350	A5SS	ENSMUST00000173849.8	novel	0.11	4	34	4	34	n	0.30	3	7	3	7	y	0.00	0	1	0	1	n	0.00	0	56	0	56	n	0.00	0	17	0	17	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.12	4	29	4	29	n	0.00	0	9	0	9	n	0.00	0	20	0	20	n	0.00	0	23	0	23	n	ENSMUSG00000068877.13	Selenbp2	chr3	protein_coding	selenium binding protein 2
novel_NIR_12795	chr3	94607019	94607317	+	94607019	94609627	A3SS	ENSMUST00000174377.2	novel	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000068877.13	Selenbp2	chr3	protein_coding	selenium binding protein 2
novel_NIR_12796	chr3	94687329	94690968	-	94687329	94693687	A5SS	ENSMUST00000107272.7	novel	0.09	1	10	1	10	n	0.00	0	9	0	9	n	0.20	4	16	4	16	y	0.00	0	10	0	10	n	0.00	0	38	0	38	n	0.06	1	16	1	16	n	0.05	1	19	1	19	n	0.00	0	15	0	15	n	0.00	0	23	0	23	n	0.04	1	23	1	23	n	0.08	1	12	1	12	n	0.05	1	19	1	19	n	ENSMUSG00000068876.17	Cgn	chr3	protein_coding	cingulin
novel_NIR_12797	chr3	94687329	94691903	-	94687329	94693687	A5SS	ENSMUST00000107272.7	novel	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.24	5	16	5	16	y	0.09	1	10	1	10	n	0.00	0	38	0	38	n	0.00	0	16	0	16	n	0.00	0	19	0	19	n	0.00	0	15	0	15	n	0.00	0	23	0	23	n	0.00	0	23	0	23	n	0.00	0	12	0	12	n	0.00	0	19	0	19	n	ENSMUSG00000068876.17	Cgn	chr3	protein_coding	cingulin
novel_NIR_12798	chr3	94745051	94746702	+	94745051	94761261	A3SS	ENSMUST00000107270.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000038902.15	Pogz	chr3	protein_coding	pogo transposable element with ZNF domain
novel_NIR_12799	chr3	94847138	94847359	+	94845386	94847359	A5SS	ENSMUST00000134202.2	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000068874.14	Selenbp1	chr3	protein_coding	selenium binding protein 1
novel_NIR_12800	chr3	94867831	94879531	-	94867831	94868326	5pMXE	ENSMUST00000125186.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000087660.2	B230398E01Rik	chr3	lncRNA	RIKEN cDNA B230398E01 gene
novel_NIR_12801	chr3	94867831	94881441	-	94867831	94868326	5pMXE	ENSMUST00000125186.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000087660.2	B230398E01Rik	chr3	lncRNA	RIKEN cDNA B230398E01 gene
novel_NIR_12802	chr3	94911683	94911926	+	94911683	94913070	A3SS	ENSMUST00000133166.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038861.15	Pi4kb	chr3	protein_coding	phosphatidylinositol 4-kinase beta
novel_NIR_12803	chr3	94916549	94917355	-	94916228	94917355	A3SS	ENSMUST00000137799.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000019338.14	Zfp687	chr3	protein_coding	zinc finger protein 687
novel_NIR_12804	chr3	94942089	94942253	-	94941337	94942253	A3SS	ENSMUST00000140348.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	13	0	13	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000005625.16	Psmd4	chr3	protein_coding	proteasome (prosome, macropain) 26S subunit, non-ATPase, 4
novel_NIR_12805	chr3	94990136	94993328	-	94990136	95013687	A5SS	ENSMUST00000107236.9	novel	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.25	2	6	2	6	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	ENSMUSG00000028126.17	Pip5k1a	chr3	protein_coding	phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha
novel_NIR_12806	chr3	95004690	95013687	-	94990133	95013687	A3SS	ENSMUST00000107232.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028126.17	Pip5k1a	chr3	protein_coding	phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha
novel_NIR_12807	chr3	95004690	95013687	-	94990136	95013687	A3SS	ENSMUST00000107236.9	novel	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.08	1	11	1	11	n	0.33	2	4	2	4	y	0.38	3	5	3	5	y	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	ENSMUSG00000028126.17	Pip5k1a	chr3	protein_coding	phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha
novel_NIR_12808	chr3	95004690	95013687	-	94990139	95013687	A3SS	ENSMUST00000107233.9	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.12	1	7	1	7	n	0.40	2	3	2	3	y	0.12	3	21	3	21	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	ENSMUSG00000028126.17	Pip5k1a	chr3	protein_coding	phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha
novel_NIR_12809	chr3	95004690	95013687	-	95004629	95013687	A3SS	ENSMUST00000107229.2	novel	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.25	2	6	2	6	y	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000028126.17	Pip5k1a	chr3	protein_coding	phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha
novel_NIR_12810	chr3	95022421	95024632	+	95022421	95025536	A3SS	ENSMUST00000139296.8	novel	0.33	1	2	1	2	n	0.00	0	6	0	6	n	1.00	3	0	3	0	y	0.33	1	2	1	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	1	2	1	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000008958.15	Vps72	chr3	protein_coding	vacuolar protein sorting 72
novel_NIR_12811	chr3	95037639	95040136	-	95037194	95040136	A3SS	ENSMUST00000173462.3	novel	-	-	-	-	-	-	0.00	0	5	0	5	n	0.60	3	2	3	2	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.17	1	5	1	5	n	ENSMUSG00000092607.10	Scnm1	chr3	protein_coding	sodium channel modifier 1
novel_NIR_12812	chr3	95038643	95040136	-	95037194	95040136	A3SS	ENSMUST00000173462.3	novel	-	-	-	-	-	-	0.29	2	5	2	5	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.17	1	5	1	5	n	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000092607.10	Scnm1	chr3	protein_coding	sodium channel modifier 1
novel_NIR_12813	chr3	95098049	95104053	-	95098049	95107452	A5SS	ENSMUST00000107209.8	novel	0.00	0	13	0	13	n	0.09	1	10	1	10	n	0.06	1	16	1	16	n	0.00	0	18	0	18	n	0.10	2	19	2	19	n	0.17	2	10	2	10	y	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.33	4	8	4	8	y	0.00	0	11	0	11	n	ENSMUSG00000038766.17	Gabpb2	chr3	protein_coding	GA repeat binding protein, beta 2
novel_NIR_12814	chr3	95111433	95111952	-	95111236	95111952	A3SS	ENSMUST00000107209.8	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	16	0	16	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.00	0	18	0	18	n	0.00	0	5	0	5	n	0.23	3	10	3	10	y	ENSMUSG00000038766.17	Gabpb2	chr3	protein_coding	GA repeat binding protein, beta 2
novel_NIR_12815	chr3	95113913	95124900	-	95113913	95116151	5pMXE	ENSMUST00000098873.11	novel	0.00	0	5	0	5	n	-	-	-	-	-	-	0.17	2	10	2	10	y	0.00	0	10	0	10	n	0.13	2	13	2	13	n	0.00	0	8	0	8	n	0.25	2	6	2	6	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.08	1	11	1	11	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	ENSMUSG00000038766.17	Gabpb2	chr3	protein_coding	GA repeat binding protein, beta 2
novel_NIR_12816	chr3	95113913	95124900	-	95113913;95123579	95123525;95124900	ES	ENSMUST00000107209.8	novel	0.00	0	2.0	0	0;4	n	0.00	0	3.0	0	2;4	n	0.18	2	9.0	2	5;13	y	0.00	0	4.5	0	3;6	n	0.31	2	4.5	2	1;8	y	0.00	0	3.5	0	3;4	n	0.33	2	4.0	2	3;5	y	0.00	0	7.0	0	4;10	n	0.00	0	3.0	0	1;5	n	0.15	1	5.5	1	7;4	n	0.00	0	1.0	0	0;2	n	0.00	0	6.0	0	6;6	n	ENSMUSG00000038766.17	Gabpb2	chr3	protein_coding	GA repeat binding protein, beta 2
novel_NIR_12817	chr3	95116247	95124900	-	95116247;95123579	95123525;95124900	ES	ENSMUST00000136139.8	novel	0.00	0	6.0	0	8;4	n	0.00	0	2.0	0	0;4	n	0.12	1	7.5	1	2;13	n	0.27	3	8.0	3	10;6	y	0.11	1	8.0	1	8;8	n	0.00	0	4.5	0	5;4	n	0.00	0	4.5	0	4;5	n	0.00	0	7.0	0	4;10	n	0.00	0	3.0	0	1;5	n	0.00	0	4.5	0	5;4	n	0.00	0	3.0	0	4;2	n	0.00	0	5.0	0	4;6	n	ENSMUSG00000038766.17	Gabpb2	chr3	protein_coding	GA repeat binding protein, beta 2
novel_NIR_12818	chr3	95116247	95124900	-	95123579	95124900	A3SS&ES	ENSMUST00000107209.8	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.07	1	13	1	13	n	0.33	3	6	3	6	y	0.11	1	8	1	8	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	ENSMUSG00000038766.17	Gabpb2	chr3	protein_coding	GA repeat binding protein, beta 2
novel_NIR_12819	chr3	95123579	95125173	-	95123579	95124900	5pMXE	ENSMUST00000107209.8	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.45	5	6	5	6	y	0.11	1	8	1	8	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.64	7	4	7	4	y	0.00	0	2	0	2	n	0.00	0	6	0	6	n	ENSMUSG00000038766.17	Gabpb2	chr3	protein_coding	GA repeat binding protein, beta 2
novel_NIR_12820	chr3	95175634	95175829	-	95175634	95176038	A5SS	ENSMUST00000148959.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000015711.9	Prune1	chr3	protein_coding	prune exopolyphosphatase
novel_NIR_12821	chr3	95175634	95177281	-	95175634	95176038	5pMXE	ENSMUST00000148959.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000015711.9	Prune1	chr3	protein_coding	prune exopolyphosphatase
novel_NIR_12822	chr3	95175634	95188655	-	95175634	95176038	5pMXE	ENSMUST00000148959.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000015711.9	Prune1	chr3	protein_coding	prune exopolyphosphatase
novel_NIR_12823	chr3	95190388	95190542	+	95190055	95190542	A5SS	ENSMUST00000135249.8	novel	0.50	6	6	6	6	y	0.00	0	6	0	6	n	0.39	7	11	7	11	y	0.45	5	6	5	6	y	0.20	3	12	3	12	y	0.50	1	1	1	1	n	0.17	2	10	2	10	y	0.00	0	9	0	9	n	0.22	2	7	2	7	y	0.00	0	19	0	19	n	0.00	0	7	0	7	n	0.23	3	10	3	10	y	ENSMUSG00000038712.17	Mindy1	chr3	protein_coding	MINDY lysine 48 deubiquitinase 1
novel_NIR_12824	chr3	95190936	95194961	+	95190936	95191896	3pMXE	ENSMUST00000149568.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038712.17	Mindy1	chr3	protein_coding	MINDY lysine 48 deubiquitinase 1
novel_NIR_12825	chr3	95190936	95194961	+	95190936	95194007	A3SS&ES	ENSMUST00000137743.8	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.20	2	8	2	8	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	ENSMUSG00000038712.17	Mindy1	chr3	protein_coding	MINDY lysine 48 deubiquitinase 1
novel_NIR_12826	chr3	95202297	95202614	+	95202297	95202611	A3SS	ENSMUST00000039537.14	novel	0.12	4	28	4	28	n	0.13	7	46	7	46	n	0.16	10	52	10	52	y	0.24	13	41	13	41	y	0.26	23	66	23	66	y	0.22	7	25	7	25	y	0.16	11	57	11	57	y	0.00	0	24	0	24	n	0.20	10	39	10	39	y	0.16	11	56	11	56	y	0.02	1	60	1	60	n	0.18	9	40	9	40	y	ENSMUSG00000038712.17	Mindy1	chr3	protein_coding	MINDY lysine 48 deubiquitinase 1
novel_NIR_12827	chr3	95202297	95202617	+	95202297	95202611	A3SS	ENSMUST00000039537.14	novel	0.00	0	28	0	28	n	0.00	0	46	0	46	n	0.00	0	52	0	52	n	0.00	0	41	0	41	n	0.00	0	66	0	66	n	0.00	0	25	0	25	n	0.00	0	57	0	57	n	0.00	0	24	0	24	n	0.00	0	39	0	39	n	0.20	14	56	14	56	y	0.00	0	60	0	60	n	0.00	0	40	0	40	n	ENSMUSG00000038712.17	Mindy1	chr3	protein_coding	MINDY lysine 48 deubiquitinase 1
novel_NIR_12828	chr3	95222849	95227373	+	95222213	95227373	A5SS	ENSMUST00000129267.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.75	3	1	3	1	y	0.75	6	2	6	2	y	0.80	4	1	4	1	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	5	0	5	0	y	1.00	3	0	3	0	y	ENSMUSG00000015714.12	Cers2	chr3	protein_coding	ceramide synthase 2
novel_NIR_12829	chr3	95222849	95227373	+	95224754	95227373	5pMXE	ENSMUST00000156850.3	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	6	0	6	0	y	1.00	4	0	4	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	5	0	5	0	y	1.00	3	0	3	0	y	ENSMUSG00000015714.12	Cers2	chr3	protein_coding	ceramide synthase 2
novel_NIR_12830	chr3	95222849	95227373	+	95225433	95227373	5pMXE	ENSMUST00000139498.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	6	0	6	0	y	1.00	4	0	4	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	5	0	5	0	y	1.00	3	0	3	0	y	ENSMUSG00000015714.12	Cers2	chr3	protein_coding	ceramide synthase 2
novel_NIR_12831	chr3	95342131	95355683	+	95341872	95355683	A5SS	ENSMUST00000147765.8	novel	0.19	3	13	3	13	y	0.09	1	10	1	10	n	0.29	6	15	6	15	y	0.35	9	17	9	17	y	0.14	3	18	3	18	n	0.08	1	11	1	11	n	0.18	3	14	3	14	y	0.42	5	7	5	7	y	0.06	1	15	1	15	n	0.30	8	19	8	19	y	0.18	2	9	2	9	y	0.00	0	28	0	28	n	ENSMUSG00000015522.19	Arnt	chr3	protein_coding	aryl hydrocarbon receptor nuclear translocator
novel_NIR_12832	chr3	95359045	95359896	+	95355794	95359896	A5SS	ENSMUST00000147765.8	novel	0.18	3	14	3	14	y	0.00	0	12	0	12	n	0.00	0	42	0	42	n	0.00	0	32	0	32	n	0.00	0	30	0	30	n	0.00	0	24	0	24	n	0.03	1	31	1	31	n	0.00	0	21	0	21	n	0.00	0	13	0	13	n	0.00	0	30	0	30	n	0.00	0	23	0	23	n	0.00	0	33	0	33	n	ENSMUSG00000015522.19	Arnt	chr3	protein_coding	aryl hydrocarbon receptor nuclear translocator
novel_NIR_12833	chr3	95645195	95645324	-	95645179	95645324	A3SS	ENSMUST00000128885.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	0.60	3	2	3	2	y	ENSMUSG00000028108.17	Ecm1	chr3	protein_coding	extracellular matrix protein 1
novel_NIR_12834	chr3	95645195	95645324	-	95645254	95645324	A3SS	ENSMUST00000131376.8	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.14	1	6	1	6	n	0.00	0	2	0	2	n	0.50	3	3	3	3	y	ENSMUSG00000028108.17	Ecm1	chr3	protein_coding	extracellular matrix protein 1
novel_NIR_12835	chr3	95655446	95655799	-	95654968	95655799	A3SS	ENSMUST00000197389.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028107.15	Tars2	chr3	protein_coding	threonyl-tRNA synthetase 2, mitochondrial (putative)
novel_NIR_12836	chr3	95658291	95658818	-	95658339	95658818	A3SS	ENSMUST00000196475.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000028107.15	Tars2	chr3	protein_coding	threonyl-tRNA synthetase 2, mitochondrial (putative)
novel_NIR_12837	chr3	95739934	95741055	-	95739934	95742666	A5SS	ENSMUST00000159901.8	novel	-	-	-	-	-	-	1.00	3	0	3	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	3	3	3	3	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000015748.14	Prpf3	chr3	protein_coding	pre-mRNA processing factor 3
novel_NIR_12838	chr3	95760949	95762546	-	95760949	95762632	A5SS	ENSMUST00000161476.8	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	7	0	7	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000015748.14	Prpf3	chr3	protein_coding	pre-mRNA processing factor 3
novel_NIR_12839	chr3	95760949	95762546	-	95760949	95763061	A5SS	ENSMUST00000015892.14	novel	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.00	0	8	0	8	n	0.09	1	10	1	10	n	0.50	7	7	7	7	y	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.00	0	2	0	2	n	0.12	1	7	1	7	n	1.00	1	0	1	0	n	0.00	0	5	0	5	n	ENSMUSG00000015748.14	Prpf3	chr3	protein_coding	pre-mRNA processing factor 3
novel_NIR_12840	chr3	95760949	95777806	-	95760949	95762632	5pMXE	ENSMUST00000161476.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000015748.14	Prpf3	chr3	protein_coding	pre-mRNA processing factor 3
novel_NIR_12841	chr3	95760949	95777806	-	95760949	95763061	5pMXE	ENSMUST00000015892.14	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.22	2	7	2	7	y	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000015748.14	Prpf3	chr3	protein_coding	pre-mRNA processing factor 3
novel_NIR_12842	chr3	95801595	95802135	+	95801595	95802269	A3SS	ENSMUST00000197081.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000015750.16	Aph1a	chr3	protein_coding	aph1 homolog A, gamma secretase subunit
novel_NIR_12843	chr3	95960411	95963297	-	95960411	95964292	A5SS	ENSMUST00000015891.6	novel	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	23	0	23	n	0.00	0	22	0	22	n	0.00	0	20	0	20	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	21	0	21	n	0.00	0	13	0	13	n	0.15	2	11	2	11	y	ENSMUSG00000015747.6	Vps45	chr3	protein_coding	vacuolar protein sorting 45
novel_NIR_12844	chr3	96037654	96038803	+	96037654	96043785	A3SS	ENSMUST00000132980.8	novel	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.27	3	8	3	8	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	ENSMUSG00000038495.15	Otud7b	chr3	protein_coding	OTU domain containing 7B
novel_NIR_12845	chr3	96047916	96048933	+	96047916	96048799	3pMXE	ENSMUST00000132980.8	novel	0.47	7	8	7	8	y	0.12	1	7	1	7	n	0.17	4	19	4	19	y	0.26	5	14	5	14	y	0.21	3	11	3	11	y	0.50	6	6	6	6	y	0.25	4	12	4	12	y	0.08	1	12	1	12	n	0.20	3	12	3	12	y	0.05	1	18	1	18	n	0.25	3	9	3	9	y	0.32	6	13	6	13	y	ENSMUSG00000038495.15	Otud7b	chr3	protein_coding	OTU domain containing 7B
novel_NIR_12846	chr3	96071847	96072103	+	96071885	96072103	A5SS	ENSMUST00000147245.8	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000045934.16	Mtmr11	chr3	protein_coding	myotubularin related protein 11
novel_NIR_12847	chr3	96072402	96072538	+	96072402	96072488	A3SS	ENSMUST00000147245.8	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000045934.16	Mtmr11	chr3	protein_coding	myotubularin related protein 11
novel_NIR_12848	chr3	96105053	96105753	-	96105053	96126939	A5SS	ENSMUST00000177442.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000015943.12	Bola1	chr3	protein_coding	bolA-like 1 (E. coli)
novel_NIR_12849	chr3	96105053	96105753	-	96105053;96105542	96105481;96105753	ES	ENSMUST00000107099.8	novel	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0.0	4	0;0	y	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	1.00	3	0.0	3	0;0	y	1.00	4	0.0	4	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000015943.12	Bola1	chr3	protein_coding	bolA-like 1 (E. coli)
novel_NIR_12850	chr3	96432646	96433727	+	96432646	96433745	A3SS	ENSMUST00000049208.11	novel	0.41	39	57	39	57	y	0.31	39	88	39	88	y	0.49	79	81	79	81	y	0.39	65	101	65	101	y	0.43	130	174	130	174	y	0.35	66	125	66	125	y	0.44	118	151	118	151	y	0.37	75	129	75	129	y	0.45	62	77	62	77	y	0.43	112	148	112	148	y	0.37	49	85	49	85	y	0.35	64	117	64	117	y	ENSMUSG00000038403.11	Hjv	chr3	protein_coding	hemojuvelin BMP co-receptor
novel_NIR_12851	chr3	96463376	96466994	-	96463376;96465713	96464602;96466994	ES	ENSMUST00000107095.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2.0	1	4;0	n	0.00	0	1.0	0	2;0	n	0.00	0	3.0	0	3;3	n	0.80	2	0.5	2	0;1	y	0.00	0	6.0	0	5;7	n	0.00	0	4.0	0	4;4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000074398.6	Gm15441	chr3	lncRNA	predicted gene 15441
novel_NIR_12852	chr3	96464904	96466994	-	96464904	96465072	5pMXE	ENSMUST00000098839.3	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000074398.6	Gm15441	chr3	lncRNA	predicted gene 15441
novel_NIR_12853	chr3	96464904	96466994	-	96465713	96466994	A3SS	ENSMUST00000107095.3	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	6	3	6	3	y	0.00	0	1	0	1	n	0.30	3	7	3	7	y	0.43	3	4	3	4	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000074398.6	Gm15441	chr3	lncRNA	predicted gene 15441
novel_NIR_12854	chr3	96466743	96466994	-	96465713	96466994	A3SS	ENSMUST00000107095.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	10	0	10	0	y	-	-	-	-	-	-	0.50	3	3	3	3	y	0.75	3	1	3	1	y	0.46	6	7	6	7	y	0.73	11	4	11	4	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000074398.6	Gm15441	chr3	lncRNA	predicted gene 15441
novel_NIR_12855	chr3	96516443	96531843	-	96516443	96536774	A5SS	ENSMUST00000059190.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045327.8	6330549D23Rik	chr3	transcribed_processed_pseudogene	RIKEN cDNA 6330549D23 gene
novel_NIR_12856	chr3	96516443	96531843	-	96516735	96531843	A3SS	ENSMUST00000160818.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045327.8	6330549D23Rik	chr3	transcribed_processed_pseudogene	RIKEN cDNA 6330549D23 gene
novel_NIR_12857	chr3	96527355	96531843	-	96516735	96531843	A3SS	ENSMUST00000160818.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045327.8	6330549D23Rik	chr3	transcribed_processed_pseudogene	RIKEN cDNA 6330549D23 gene
novel_NIR_12858	chr3	96531982	96536774	-	96516443	96536774	A3SS	ENSMUST00000059190.3	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045327.8	6330549D23Rik	chr3	transcribed_processed_pseudogene	RIKEN cDNA 6330549D23 gene
novel_NIR_12859	chr3	96531982	96536774	-	96531946	96536774	A3SS	ENSMUST00000160818.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000045327.8	6330549D23Rik	chr3	transcribed_processed_pseudogene	RIKEN cDNA 6330549D23 gene
novel_NIR_12860	chr3	96537344	96537622	+	96537381	96537622	A5SS	ENSMUST00000198027.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000038374.11	Rbm8a	chr3	protein_coding	RNA binding motif protein 8a
novel_NIR_12861	chr3	96537381	96537618	+	96537381	96537622	A3SS	ENSMUST00000198027.5	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038374.11	Rbm8a	chr3	protein_coding	RNA binding motif protein 8a
novel_NIR_12862	chr3	96563849	96564250	+	96563849;96564088	96564012;96564250	ES	ENSMUST00000119365.8	novel	0.00	0	2.0	0	1;3	n	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	0.00	0	4.5	0	5;4	n	0.50	2	2.0	2	1;3	y	0.00	0	1.0	0	1;1	n	0.00	0	1.0	0	1;1	n	0.00	0	2.0	0	0;4	n	0.00	0	3.0	0	3;3	n	0.00	0	0.5	0	1;0	n	0.00	0	1.0	0	2;0	n	0.00	0	2.0	0	1;3	n	ENSMUSG00000090210.8	Itga10	chr3	protein_coding	integrin, alpha 10
novel_NIR_12863	chr3	96564339	96564970	+	96564339;96564827	96564743;96564970	ES	ENSMUST00000119365.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1.0	0	0;2	n	0.00	0	1.0	0	2;0	n	0.33	1	2.0	1	1;3	n	-	-	-	-	-	-	0.00	0	3.0	0	3;3	n	0.00	0	1.5	0	3;0	n	-	-	-	-	-	-	0.00	0	1.5	0	2;1	n	0.00	0	2.5	0	3;2	n	0.57	2	1.5	2	3;0	y	ENSMUSG00000090210.8	Itga10	chr3	protein_coding	integrin, alpha 10
novel_NIR_12864	chr3	96565417	96565489	+	96565355	96565489	A5SS	ENSMUST00000119365.8	novel	0.00	0	2	0	2	n	0.25	2	6	2	6	y	-	-	-	-	-	-	0.00	0	5	0	5	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	0.00	0	2	0	2	n	0.50	3	3	3	3	y	-	-	-	-	-	-	0.25	1	3	1	3	n	1.00	1	0	1	0	n	ENSMUSG00000090210.8	Itga10	chr3	protein_coding	integrin, alpha 10
novel_NIR_12865	chr3	96608736	96608929	+	96608736	96608932	A3SS	ENSMUST00000107076.10	novel	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.13	2	13	2	13	n	0.16	3	16	3	16	y	0.00	0	21	0	21	n	0.00	0	1	0	1	n	0.06	1	15	1	15	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	22	0	22	n	0.00	0	14	0	14	n	0.06	1	16	1	16	n	ENSMUSG00000028101.19	Pias3	chr3	protein_coding	protein inhibitor of activated STAT 3
novel_NIR_12866	chr3	96740035	96744012	+	96740035	96757544	A3SS	ENSMUST00000107070.8	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000038298.15	Pdzk1	chr3	protein_coding	PDZ domain containing 1
novel_NIR_12867	chr3	97113257	97114463	-	97113293	97114463	A3SS	ENSMUST00000046521.14	novel	1.00	1	0	1	0	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	1.00	2	0	2	0	y	0.12	1	7	1	7	n	0.33	4	8	4	8	y	0.50	7	7	7	7	y	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	8	0	8	n	0.17	1	5	1	5	n	0.20	1	4	1	4	n	ENSMUSG00000038256.16	Bcl9	chr3	protein_coding	B cell CLL/lymphoma 9
novel_NIR_12868	chr3	97121190	97122650	-	97121190	97122428	A5SS	ENSMUST00000046521.14	novel	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.25	2	6	2	6	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	ENSMUSG00000038256.16	Bcl9	chr3	protein_coding	B cell CLL/lymphoma 9
novel_NIR_12869	chr3	97536511	97540443	+	97536511	97536888	3pMXE	ENSMUST00000133017.8	novel	0.37	10	17	10	17	y	0.15	5	29	5	29	y	0.00	0	10	0	10	n	0.12	3	23	3	23	n	0.10	3	27	3	27	n	0.00	0	3	0	3	n	0.06	1	17	1	17	n	0.00	0	7	0	7	n	0.17	3	15	3	15	y	0.18	4	18	4	18	y	0.12	2	15	2	15	n	0.22	2	7	2	7	y	ENSMUSG00000028088.15	Fmo5	chr3	protein_coding	flavin containing monooxygenase 5
novel_NIR_12870	chr3	97536511	97542831	+	97536511	97536888	3pMXE	ENSMUST00000133017.8	novel	0.11	2	17	2	17	n	0.28	11	29	11	29	y	0.00	0	10	0	10	n	0.00	0	23	0	23	n	0.25	9	27	9	27	y	0.00	0	3	0	3	n	0.00	0	17	0	17	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.00	0	18	0	18	n	0.00	0	15	0	15	n	0.00	0	7	0	7	n	ENSMUSG00000028088.15	Fmo5	chr3	protein_coding	flavin containing monooxygenase 5
novel_NIR_12871	chr3	97536511;97540535	97540443;97542827	+	97536511;97537044	97536888;97542827	MXE	ENSMUST00000140283.2	novel	0.27	7.5	20.5	10;5	17;24	y	0.06	2.5	38.5	5;0	29;48	n	0.00	0.0	7.5	0;0	10;5	n	0.10	3.0	26.0	3;3	23;29	n	0.12	4.0	28.0	3;5	27;29	n	0.00	0.0	2.5	0;0	3;2	n	0.03	0.5	17.0	1;0	17;17	n	0.07	0.5	7.0	0;1	7;7	n	0.09	1.5	15.0	3;0	15;15	n	0.16	4.0	20.5	4;4	18;23	y	0.13	2.5	17.0	2;3	15;19	n	0.09	1.0	10.5	2;0	7;14	n	ENSMUSG00000028088.15	Fmo5	chr3	protein_coding	flavin containing monooxygenase 5
novel_NIR_12872	chr3	97598113	97599637	-	97598169	97599637	A3SS	ENSMUST00000168438.9	novel	0.08	4	49	4	49	n	0.07	3	38	3	38	n	0.00	0	37	0	37	n	0.13	7	45	7	45	n	0.10	6	54	6	54	n	0.12	3	22	3	22	n	0.36	37	65	37	65	y	0.04	1	27	1	27	n	0.16	6	31	6	31	y	0.16	9	49	9	49	y	0.07	4	50	4	50	n	0.13	6	39	6	39	n	ENSMUSG00000038170.16	Pde4dip	chr3	protein_coding	phosphodiesterase 4D interacting protein (myomegalin)
novel_NIR_12873	chr3	97598169;97598861	97598801;97599637	-	97598169	97599637	cassetteExon	ENSMUST00000168438.9	novel	0.05	2.5	49	5;0	49	n	0.08	3.5	38	6;1	38	n	0.01	0.5	37	1;0	37	n	0.08	4.0	45	7;1	45	n	0.07	4.0	54	8;0	54	n	0.10	2.5	22	4;1	22	n	0.55	79.5	65	84;75	65	y	0.05	1.5	27	3;0	27	n	0.07	2.5	31	3;2	31	n	0.04	2.0	49	2;2	49	n	0.08	4.5	50	3;6	50	n	0.05	2.0	39	3;1	39	n	ENSMUSG00000038170.16	Pde4dip	chr3	protein_coding	phosphodiesterase 4D interacting protein (myomegalin)
novel_NIR_12874	chr3	97610734	97616798	-	97610734;97614373	97614188;97616798	ES	ENSMUST00000090750.12	novel	0.96	22	1.0	22	0;2	y	1.00	18	0.0	18	0;0	y	1.00	15	0.0	15	0;0	y	1.00	27	0.0	27	0;0	y	0.98	25	0.5	25	1;0	y	0.97	15	0.5	15	0;1	y	0.14	17	106.0	17	110;102	n	0.89	12	1.5	12	1;2	y	0.92	6	0.5	6	0;1	y	0.98	20	0.5	20	1;0	y	0.95	18	1.0	18	0;2	y	0.97	17	0.5	17	0;1	y	ENSMUSG00000038170.16	Pde4dip	chr3	protein_coding	phosphodiesterase 4D interacting protein (myomegalin)
novel_NIR_12875	chr3	97610734	97617537	-	97610734;97614373	97614188;97617537	ES	ENSMUST00000168438.9	novel	1.00	10	0.0	10	0;0	y	1.00	12	0.0	12	0;0	y	1.00	6	0.0	6	0;0	y	1.00	7	0.0	7	0;0	y	0.91	5	0.5	5	1;0	y	1.00	4	0.0	4	0;0	y	0.17	13	62.5	13	110;15	y	0.95	9	0.5	9	1;0	y	1.00	11	0.0	11	0;0	y	0.98	23	0.5	23	1;0	y	1.00	12	0.0	12	0;0	y	1.00	15	0.0	15	0;0	y	ENSMUSG00000038170.16	Pde4dip	chr3	protein_coding	phosphodiesterase 4D interacting protein (myomegalin)
novel_NIR_12876	chr3	97610734;97616896	97616798;97617537	-	97610734;97614373	97614188;97617537	MXE	ENSMUST00000168438.9	novel	1.00	14.0	0.0	22;6	0;0	y	1.00	12.5	0.0	18;7	0;0	y	1.00	10.0	0.0	15;5	0;0	y	1.00	17.0	0.0	27;7	0;0	y	0.97	17.0	0.5	25;9	1;0	y	1.00	10.5	0.0	15;6	0;0	y	0.30	26.5	62.5	17;36	110;15	y	0.96	11.0	0.5	12;10	1;0	y	1.00	4.5	0.0	6;3	0;0	y	0.97	15.0	0.5	20;10	1;0	y	1.00	10.5	0.0	18;3	0;0	y	1.00	12.0	0.0	17;7	0;0	y	ENSMUSG00000038170.16	Pde4dip	chr3	protein_coding	phosphodiesterase 4D interacting protein (myomegalin)
novel_NIR_12877	chr3	97610734;97616899	97616798;97617537	-	97610734;97614373	97614188;97617537	MXE	ENSMUST00000168438.9	novel	1.00	14.5	0.0	22;7	0;0	y	1.00	10.0	0.0	18;2	0;0	y	1.00	13.0	0.0	15;11	0;0	y	1.00	18.0	0.0	27;9	0;0	y	0.98	22.0	0.5	25;19	1;0	y	1.00	11.0	0.0	15;7	0;0	y	0.32	29.0	62.5	17;41	110;15	y	0.94	8.0	0.5	12;4	1;0	y	1.00	8.0	0.0	6;10	0;0	y	0.97	14.5	0.5	20;9	1;0	y	1.00	12.5	0.0	18;7	0;0	y	1.00	16.5	0.0	17;16	0;0	y	ENSMUSG00000038170.16	Pde4dip	chr3	protein_coding	phosphodiesterase 4D interacting protein (myomegalin)
novel_NIR_12878	chr3	97616896	97617537	-	97616950	97617537	A3SS	ENSMUST00000090750.12	novel	0.60	6	4	6	4	y	0.58	7	5	7	5	y	0.25	5	15	5	15	y	0.28	7	18	7	18	y	0.38	9	15	9	15	y	0.86	6	1	6	1	y	0.46	36	42	36	42	y	0.71	10	4	10	4	y	0.33	3	6	3	6	y	0.56	10	8	10	8	y	0.30	3	7	3	7	y	0.58	7	5	7	5	y	ENSMUSG00000038170.16	Pde4dip	chr3	protein_coding	phosphodiesterase 4D interacting protein (myomegalin)
novel_NIR_12879	chr3	97616899	97617537	-	97616950	97617537	A3SS	ENSMUST00000090750.12	novel	0.64	7	4	7	4	y	0.29	2	5	2	5	y	0.42	11	15	11	15	y	0.33	9	18	9	18	y	0.56	19	15	19	15	y	0.88	7	1	7	1	y	0.49	41	42	41	42	y	0.50	4	4	4	4	y	0.62	10	6	10	6	y	0.53	9	8	9	8	y	0.50	7	7	7	7	y	0.76	16	5	16	5	y	ENSMUSG00000038170.16	Pde4dip	chr3	protein_coding	phosphodiesterase 4D interacting protein (myomegalin)
novel_NIR_12880	chr3	97662913	97664022	-	97662913	97663686	A5SS	ENSMUST00000175751.8	novel	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000038170.16	Pde4dip	chr3	protein_coding	phosphodiesterase 4D interacting protein (myomegalin)
novel_NIR_12881	chr3	97872692	97873622	+	97837666	97873622	A5SS	ENSMUST00000098828.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000074388.4	Gm5544	chr3	lncRNA	predicted gene 5544
novel_NIR_12882	chr3	97921087	97921441	+	97921087	97955044	A3SS	ENSMUST00000198324.2	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.67	2	1	2	1	y	0.29	2	5	2	5	y	0.14	1	6	1	6	n	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.14	1	6	1	6	n	ENSMUSG00000027878.12	Notch2	chr3	protein_coding	notch 2
novel_NIR_12883	chr3	98216375	98216776	+	98216375	98217136	A3SS	ENSMUST00000120541.8	novel	0.00	0	25	0	25	n	0.20	9	37	9	37	y	0.00	0	23	0	23	n	0.15	7	40	7	40	y	0.00	0	41	0	41	n	0.00	0	8	0	8	n	0.05	4	70	4	70	n	0.00	0	23	0	23	n	0.14	5	32	5	32	n	0.25	17	51	17	51	n	0.00	0	53	0	53	n	0.00	0	34	0	34	n	ENSMUSG00000027875.13	Hmgcs2	chr3	protein_coding	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2
novel_NIR_12884	chr3	98216375	98217382	+	98216375	98217136	A3SS	ENSMUST00000120541.8	novel	0.00	0	25	0	25	n	0.00	0	37	0	37	n	0.00	0	23	0	23	n	0.32	19	40	19	40	y	0.00	0	41	0	41	n	0.00	0	8	0	8	n	0.00	0	70	0	70	n	0.08	2	23	2	23	n	0.27	12	32	12	32	y	0.00	0	51	0	51	n	0.00	0	53	0	53	n	0.00	0	34	0	34	n	ENSMUSG00000027875.13	Hmgcs2	chr3	protein_coding	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2
novel_NIR_12885	chr3	98216375	98217611	+	98216375	98217136	A3SS	ENSMUST00000120541.8	novel	0.14	4	25	4	25	n	0.00	0	37	0	37	n	0.00	0	23	0	23	n	0.00	0	40	0	40	n	0.23	12	41	12	41	y	0.38	5	8	5	8	y	0.16	13	70	13	70	y	0.15	4	23	4	23	y	0.00	0	32	0	32	n	0.36	29	51	29	51	y	0.09	5	53	5	53	n	0.00	0	34	0	34	n	ENSMUSG00000027875.13	Hmgcs2	chr3	protein_coding	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2
novel_NIR_12886	chr3	98216375;98216960	98216776;98217136	+	98216375	98217136	cassetteExon	ENSMUST00000120541.8	novel	0.00	0.0	25	0;0	25	n	0.11	4.5	37	9;0	37	n	0.00	0.0	23	0;0	23	n	0.08	3.5	40	7;0	40	n	0.00	0.0	41	0;0	41	n	0.00	0.0	8	0;0	8	n	0.03	2.0	70	4;0	70	n	0.00	0.0	23	0;0	23	n	0.07	2.5	32	5;0	32	n	0.17	10.5	51	17;4	51	y	0.00	0.0	53	0;0	53	n	0.00	0.0	34	0;0	34	n	ENSMUSG00000027875.13	Hmgcs2	chr3	protein_coding	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2
novel_NIR_12887	chr3	98289894	98332585	+	98289894	98317807	3pMXE	ENSMUST00000196194.5	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	ENSMUSG00000050064.15	Zfp697	chr3	protein_coding	zinc finger protein 697
novel_NIR_12888	chr3	98289894	98332585	+	98289894	98332539	A3SS	ENSMUST00000056096.15	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000050064.15	Zfp697	chr3	protein_coding	zinc finger protein 697
novel_NIR_12889	chr3	98289894	98332585	+	98289894	98586853	A3SS	ENSMUST00000196741.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000050064.15	Zfp697	chr3	protein_coding	zinc finger protein 697
novel_NIR_12890	chr3	98617673	98620744	-	98619633	98620744	A3SS	ENSMUST00000107022.8	novel	0.00	0	25	0	25	n	0.17	4	19	4	19	y	0.00	0	2	0	2	n	0.03	1	28	1	28	n	0.56	15	12	15	12	y	-	-	-	-	-	-	0.25	8	24	8	24	y	1.00	1	0	1	0	n	0.21	11	42	11	42	y	0.28	16	41	16	41	y	0.22	12	42	12	42	y	0.37	34	59	34	59	y	ENSMUSG00000063730.14	Hsd3b2	chr3	protein_coding	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2
novel_NIR_12891	chr3	98617673	98763310	-	98760679	98763310	3pMXE	ENSMUST00000107016.10	novel	0.18	3	14	3	14	y	0.00	0	16	0	16	n	0.00	0	2	0	2	n	0.00	0	32	0	32	n	0.00	0	16	0	16	n	-	-	-	-	-	-	0.00	0	24	0	24	n	0.00	0	1	0	1	n	0.00	0	35	0	35	n	0.00	0	32	0	32	n	0.00	0	33	0	33	n	0.00	0	43	0	43	n	ENSMUSG00000027871.17	Hsd3b1	chr3	protein_coding	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1
novel_NIR_12892	chr3	98631208	98632234	-	98631208	98631789	5pMXE	ENSMUST00000107022.8	novel	1.00	42	0	42	0	y	1.00	27	0	27	0	y	-	-	-	-	-	-	1.00	84	0	84	0	y	1.00	42	0	42	0	y	-	-	-	-	-	-	1.00	57	0	57	0	y	0.50	1	1	1	1	n	0.98	85	2	85	2	y	1.00	126	0	126	0	y	1.00	81	0	81	0	y	0.99	109	1	109	1	y	ENSMUSG00000063730.14	Hsd3b2	chr3	protein_coding	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2
novel_NIR_12893	chr3	98632506	98660627	-	98650011	98660627	3pMXE	ENSMUST00000107018.8	novel	0.00	0	27	0	27	n	0.00	0	21	0	21	n	-	-	-	-	-	-	0.13	6	41	6	41	n	0.17	3	15	3	15	y	-	-	-	-	-	-	0.06	2	34	2	34	n	0.00	0	1	0	1	n	0.13	4	26	4	26	n	0.10	4	35	4	35	n	0.00	0	38	0	38	n	0.14	10	64	10	64	n	ENSMUSG00000062410.15	Hsd3b3	chr3	protein_coding	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 3
novel_NIR_12894	chr3	98650011	98669610	-	98650011	98660627	A5SS&ES	ENSMUST00000107018.8	novel	0.00	0	27	0	27	n	0.19	5	21	5	21	y	-	-	-	-	-	-	0.05	2	41	2	41	n	0.00	0	15	0	15	n	-	-	-	-	-	-	0.00	0	34	0	34	n	0.00	0	1	0	1	n	0.04	1	26	1	26	n	0.19	8	35	8	35	y	0.28	15	38	15	38	y	0.04	3	64	3	64	n	ENSMUSG00000062410.15	Hsd3b3	chr3	protein_coding	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 3
novel_NIR_12895	chr3	98660779	98669610	-	98660832	98669610	A3SS	ENSMUST00000146196.4	novel	0.20	16	66	16	66	y	0.07	2	28	2	28	n	0.00	0	1	0	1	n	0.21	28	106	28	106	y	0.18	12	55	12	55	y	0.00	0	1	0	1	n	0.26	25	72	25	72	y	0.20	1	4	1	4	n	0.22	28	101	28	101	y	0.15	23	130	23	130	y	0.14	19	121	19	121	n	0.16	38	204	38	204	y	ENSMUSG00000062410.15	Hsd3b3	chr3	protein_coding	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 3
novel_NIR_12896	chr3	99048504	99094833	+	99048504	99094797	A3SS	ENSMUST00000004343.7	novel	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.18	2	9	2	9	y	0.00	0	6	0	6	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000004233.15	Wars2	chr3	protein_coding	tryptophanyl tRNA synthetase 2 (mitochondrial)
novel_NIR_12897	chr3	99048504	99094833	+	99048504	99111852	A3SS	ENSMUST00000198044.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000004233.15	Wars2	chr3	protein_coding	tryptophanyl tRNA synthetase 2 (mitochondrial)
novel_NIR_12898	chr3	99048504	99112541	+	99048504;99111932	99111852;99112541	ES	ENSMUST00000198044.2	novel	0.00	0	5.5	0	3;8	n	0.00	0	3.5	0	0;7	n	0.00	0	8.0	0	0;16	n	0.00	0	6.0	0	0;12	n	0.00	0	9.0	0	0;18	n	0.33	2	4.0	2	0;8	y	0.00	0	5.0	0	1;9	n	0.00	0	2.5	0	0;5	n	0.00	0	1.0	0	0;2	n	0.00	0	6.0	0	0;12	n	0.00	0	5.0	0	0;10	n	0.00	0	8.0	0	0;16	n	ENSMUSG00000004233.15	Wars2	chr3	protein_coding	tryptophanyl tRNA synthetase 2 (mitochondrial)
novel_NIR_12899	chr4	100259577	100265010	+	100191713	100265010	A5SS	ENSMUST00000039630.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.75	6	2	6	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	ENSMUSG00000035305.6	Ror1	chr4	protein_coding	receptor tyrosine kinase-like orphan receptor 1
novel_NIR_12900	chr4	100259797	100265010	+	100191713	100265010	A5SS	ENSMUST00000039630.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000035305.6	Ror1	chr4	protein_coding	receptor tyrosine kinase-like orphan receptor 1
novel_NIR_12901	chr4	100340071	100340401	+	100340071	100343844	A3SS	ENSMUST00000133493.9	novel	0.40	6	9	6	9	y	0.50	5	5	5	5	y	0.00	0	4	0	4	n	0.31	4	9	4	9	y	0.38	11	18	11	18	y	0.00	0	4	0	4	n	0.23	6	20	6	20	y	0.46	6	7	6	7	y	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.60	15	10	15	10	y	ENSMUSG00000069733.12	Ube2u	chr4	protein_coding	ubiquitin-conjugating enzyme E2U (putative)
novel_NIR_12902	chr4	101051060	101056626	-	101051060	101054973	A5SS&ES	ENSMUST00000132292.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	17	0	17	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.29	2	5	2	5	y	ENSMUSG00000028530.15	Jak1	chr4	protein_coding	Janus kinase 1
novel_NIR_12903	chr4	101051060	101056626	-	101051060	101114690	A5SS	ENSMUST00000149297.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000028530.15	Jak1	chr4	protein_coding	Janus kinase 1
novel_NIR_12904	chr4	101055177	101056030	-	101055177	101056066	A5SS	ENSMUST00000125968.2	novel	0.50	1	1	1	1	n	0.50	1	1	1	1	n	1.00	4	0	4	0	y	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028530.15	Jak1	chr4	protein_coding	Janus kinase 1
novel_NIR_12905	chr4	101055177	101056030	-	101055177	101122239	A5SS	ENSMUST00000132292.2	novel	0.14	1	6	1	6	n	0.50	1	1	1	1	n	0.67	4	2	4	2	y	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000028530.15	Jak1	chr4	protein_coding	Janus kinase 1
novel_NIR_12906	chr4	101056111	101056626	-	101056111	101122239	A5SS	ENSMUST00000125968.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000028530.15	Jak1	chr4	protein_coding	Janus kinase 1
novel_NIR_12907	chr4	101056762	101122239	-	101055177	101122239	A3SS	ENSMUST00000132292.2	novel	0.25	2	6	2	6	y	0.50	1	1	1	1	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000028530.15	Jak1	chr4	protein_coding	Janus kinase 1
novel_NIR_12908	chr4	101056762	101122239	-	101056111	101122239	A3SS	ENSMUST00000125968.2	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028530.15	Jak1	chr4	protein_coding	Janus kinase 1
novel_NIR_12909	chr4	101056762	101122239	-	101114749	101122239	A3SS&ES	ENSMUST00000149297.2	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028530.15	Jak1	chr4	protein_coding	Janus kinase 1
novel_NIR_12910	chr4	101076639	101122239	-	101055177	101122239	A3SS	ENSMUST00000132292.2	novel	0.00	0	6	0	6	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.67	2	1	2	1	y	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	ENSMUSG00000028530.15	Jak1	chr4	protein_coding	Janus kinase 1
novel_NIR_12911	chr4	101076639	101122239	-	101056111	101122239	A3SS	ENSMUST00000125968.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000028530.15	Jak1	chr4	protein_coding	Janus kinase 1
novel_NIR_12912	chr4	101076639	101122239	-	101114749	101122239	A3SS&ES	ENSMUST00000149297.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000028530.15	Jak1	chr4	protein_coding	Janus kinase 1
novel_NIR_12913	chr4	101213085	101224187	+	101211085	101224187	A5SS	ENSMUST00000123107.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000087361.8	0610043K17Rik	chr4	lncRNA	RIKEN cDNA 0610043K17 gene
novel_NIR_12914	chr4	101213085	101224187	+	101223872	101224187	5pMXE	ENSMUST00000142581.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000087361.8	0610043K17Rik	chr4	lncRNA	RIKEN cDNA 0610043K17 gene
novel_NIR_12915	chr4	101214802	101224187	+	101211085	101224187	A5SS	ENSMUST00000123107.8	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000087361.8	0610043K17Rik	chr4	lncRNA	RIKEN cDNA 0610043K17 gene
novel_NIR_12916	chr4	101214802	101224187	+	101223872	101224187	5pMXE	ENSMUST00000142581.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000087361.8	0610043K17Rik	chr4	lncRNA	RIKEN cDNA 0610043K17 gene
novel_NIR_12917	chr4	101220772	101224187	+	101211085	101224187	A5SS	ENSMUST00000123107.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000087361.8	0610043K17Rik	chr4	lncRNA	RIKEN cDNA 0610043K17 gene
novel_NIR_12918	chr4	101220772	101224187	+	101223872	101224187	5pMXE	ENSMUST00000142581.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000087361.8	0610043K17Rik	chr4	lncRNA	RIKEN cDNA 0610043K17 gene
novel_NIR_12919	chr4	101222774	101224187	+	101211085	101224187	A5SS	ENSMUST00000123107.8	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000087361.8	0610043K17Rik	chr4	lncRNA	RIKEN cDNA 0610043K17 gene
novel_NIR_12920	chr4	101222774	101224187	+	101223872	101224187	5pMXE	ENSMUST00000142581.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	6	0	6	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000087361.8	0610043K17Rik	chr4	lncRNA	RIKEN cDNA 0610043K17 gene
novel_NIR_12921	chr4	101231520	101232317	+	101231520	101248140	A3SS	ENSMUST00000142581.2	novel	0.25	1	3	1	3	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.80	4	1	4	1	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.75	3	1	3	1	y	ENSMUSG00000087361.8	0610043K17Rik	chr4	lncRNA	RIKEN cDNA 0610043K17 gene
novel_NIR_12922	chr4	101231520	101232317	+	101231520	101256087	A3SS	ENSMUST00000123107.8	novel	0.33	1	2	1	2	n	0.33	2	4	2	4	y	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	1.00	4	0	4	0	y	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.14	1	6	1	6	n	0.17	1	5	1	5	n	0.33	1	2	1	2	n	0.27	3	8	3	8	y	ENSMUSG00000087361.8	0610043K17Rik	chr4	lncRNA	RIKEN cDNA 0610043K17 gene
novel_NIR_12923	chr4	101231520	101235070	+	101231520	101248140	A3SS	ENSMUST00000142581.2	novel	0.40	2	3	2	3	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.75	3	1	3	1	y	ENSMUSG00000087361.8	0610043K17Rik	chr4	lncRNA	RIKEN cDNA 0610043K17 gene
novel_NIR_12924	chr4	101231520	101235070	+	101231520	101256087	A3SS	ENSMUST00000123107.8	novel	0.50	2	2	2	2	y	0.20	1	4	1	4	n	0.10	1	9	1	9	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	1.00	1	0	1	0	n	0.22	2	7	2	7	y	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.27	3	8	3	8	y	ENSMUSG00000087361.8	0610043K17Rik	chr4	lncRNA	RIKEN cDNA 0610043K17 gene
novel_NIR_12925	chr4	101231520	101236795	+	101231520	101248140	A3SS	ENSMUST00000142581.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000087361.8	0610043K17Rik	chr4	lncRNA	RIKEN cDNA 0610043K17 gene
novel_NIR_12926	chr4	101231520	101236795	+	101231520	101256087	A3SS	ENSMUST00000123107.8	novel	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.11	1	8	1	8	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.20	2	8	2	8	y	ENSMUSG00000087361.8	0610043K17Rik	chr4	lncRNA	RIKEN cDNA 0610043K17 gene
novel_NIR_12927	chr4	101231520	101252846	+	101231520	101248140	3pMXE	ENSMUST00000142581.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000087361.8	0610043K17Rik	chr4	lncRNA	RIKEN cDNA 0610043K17 gene
novel_NIR_12928	chr4	101231520;101252990	101252846;101256087	+	101231520	101256087	cassetteExon	ENSMUST00000123107.8	novel	0.20	0.5	2	0;1	2	n	0.00	0.0	4	0;0	4	n	0.05	0.5	9	0;1	9	n	0.06	0.5	8	1;0	8	n	0.06	0.5	8	1;0	8	n	1.00	1.5	0	0;3	0	n	0.22	2.0	7	0;4	7	n	0.37	3.5	6	1;6	6	n	0.43	4.5	6	4;5	6	y	0.41	3.5	5	1;6	5	n	0.00	0.0	2	0;0	2	n	0.20	2.0	8	0;4	8	n	ENSMUSG00000087361.8	0610043K17Rik	chr4	lncRNA	RIKEN cDNA 0610043K17 gene
novel_NIR_12929	chr4	101252990	101256087	+	101231520	101256087	A5SS	ENSMUST00000123107.8	novel	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.10	1	9	1	9	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	1.00	3	0	3	0	n	0.36	4	7	4	7	n	0.50	6	6	6	6	n	0.45	5	6	5	6	n	0.55	6	5	6	5	n	0.00	0	2	0	2	n	0.33	4	8	4	8	y	ENSMUSG00000087361.8	0610043K17Rik	chr4	lncRNA	RIKEN cDNA 0610043K17 gene
novel_NIR_12930	chr4	101277162	101277760	+	101277162	101317697	A3SS	ENSMUST00000133055.8	novel	0.00	0	1	0	1	n	1.00	3	0	3	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.71	5	2	5	2	y	1.00	2	0	2	0	y	ENSMUSG00000028527.19	Ak4	chr4	protein_coding	adenylate kinase 4
novel_NIR_12931	chr4	101277162	101279382	+	101277162	101304357	A3SS	ENSMUST00000102780.8	novel	0.51	41	39	41	39	y	0.46	39	45	39	45	y	0.36	64	113	64	113	y	0.24	32	100	32	100	y	0.43	55	74	55	74	y	0.30	18	42	18	42	y	0.32	35	76	35	76	y	0.37	42	73	42	73	y	0.44	35	45	35	45	y	0.31	56	127	56	127	y	0.44	59	74	59	74	y	0.33	45	92	45	92	y	ENSMUSG00000028527.19	Ak4	chr4	protein_coding	adenylate kinase 4
novel_NIR_12932	chr4	101277162	101279382	+	101277162	101317697	A3SS	ENSMUST00000133055.8	novel	0.98	41	1	41	1	y	1.00	39	0	39	0	y	1.00	64	0	64	0	y	1.00	32	0	32	0	y	1.00	55	0	55	0	y	1.00	18	0	18	0	y	0.97	35	1	35	1	y	1.00	42	0	42	0	y	1.00	35	0	35	0	y	0.98	56	1	56	1	y	0.97	59	2	59	2	y	1.00	45	0	45	0	y	ENSMUSG00000028527.19	Ak4	chr4	protein_coding	adenylate kinase 4
novel_NIR_12933	chr4	101277162	101304360	+	101277162	101317697	A3SS	ENSMUST00000133055.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000028527.19	Ak4	chr4	protein_coding	adenylate kinase 4
novel_NIR_12934	chr4	101277944	101279382	+	101277944	101304357	A3SS	ENSMUST00000151561.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.92	11	1	11	1	y	0.00	0	2	0	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	0.50	1	1	1	1	n	1.00	1	0	1	0	n	ENSMUSG00000028527.19	Ak4	chr4	protein_coding	adenylate kinase 4
novel_NIR_12935	chr4	101311907	101317697	+	101277162	101317697	A5SS	ENSMUST00000133055.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	2	2	2	2	y	-	-	-	-	-	-	ENSMUSG00000028527.19	Ak4	chr4	protein_coding	adenylate kinase 4
novel_NIR_12936	chr4	101649267	101652150	+	101649267	101668545	A3SS	ENSMUST00000106921.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.18	7	32	7	32	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	16	0	16	n	ENSMUSG00000057722.18	Lepr	chr4	protein_coding	leptin receptor
novel_NIR_12937	chr4	101649267	101652150	+	101649267	101671645	A3SS	ENSMUST00000037552.10	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000057722.18	Lepr	chr4	protein_coding	leptin receptor
novel_NIR_12938	chr4	102428295	102448028	+	102428075	102448028	A5SS	ENSMUST00000106911.8	novel	0.00	0	7	0	7	n	-	-	-	-	-	-	0.05	1	19	1	19	n	0.00	0	11	0	11	n	0.20	2	8	2	8	y	0.00	0	10	0	10	n	0.08	1	11	1	11	n	0.00	0	10	0	10	n	0.07	1	13	1	13	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	31	0	31	n	ENSMUSG00000028525.17	Pde4b	chr4	protein_coding	phosphodiesterase 4B, cAMP specific
novel_NIR_12939	chr4	102428295	102448028	+	102444849	102448028	5pMXE	ENSMUST00000030251.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028525.17	Pde4b	chr4	protein_coding	phosphodiesterase 4B, cAMP specific
novel_NIR_12940	chr4	102428295	102448028	+	102447398	102448028	5pMXE	ENSMUST00000097949.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028525.17	Pde4b	chr4	protein_coding	phosphodiesterase 4B, cAMP specific
novel_NIR_12941	chr4	102896538	102899810	-	102896538	102898609	5pMXE	ENSMUST00000152647.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000035126.20	Dnai4	chr4	protein_coding	dynein axonemal intermediate chain 4
novel_NIR_12942	chr4	102896538	102899810	-	102896538	102905407	A5SS	ENSMUST00000138960.8	novel	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	2	2	2	2	y	ENSMUSG00000035126.20	Dnai4	chr4	protein_coding	dynein axonemal intermediate chain 4
novel_NIR_12943	chr4	102972857	102984470	+	102972857	102975439	3pMXE	ENSMUST00000143417.8	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028522.17	Mier1	chr4	protein_coding	MEIR1 treanscription regulator
novel_NIR_12944	chr4	102972857	102984470	+	102972857;102975512	102975436;102984470	ES	ENSMUST00000149259.8	novel	0.00	0	2.5	0	2;3	n	0.00	0	3.5	0	0;7	n	0.00	0	6.0	0	2;10	n	0.00	0	7.5	0	6;9	n	0.00	0	6.5	0	5;8	n	0.00	0	5.5	0	1;10	n	0.00	0	3.5	0	4;3	n	0.00	0	5.0	0	1;9	n	0.55	3	2.5	3	2;3	y	0.00	0	7.0	0	4;10	n	0.00	0	1.5	0	1;2	n	0.00	0	6.0	0	5;7	n	ENSMUSG00000028522.17	Mier1	chr4	protein_coding	MEIR1 treanscription regulator
novel_NIR_12945	chr4	102972857	102984470	+	102972857;102975512	102975439;102984470	ES	ENSMUST00000106858.8	novel	0.00	0	2.0	0	1;3	n	0.00	0	4.5	0	2;7	n	0.00	0	6.0	0	2;10	n	0.00	0	6.0	0	3;9	n	0.00	0	4.0	0	0;8	n	0.00	0	5.0	0	0;10	n	0.00	0	3.0	0	3;3	n	0.00	0	4.5	0	0;9	n	0.67	3	1.5	3	0;3	y	0.00	0	6.5	0	3;10	n	0.00	0	1.0	0	0;2	n	0.00	0	3.5	0	0;7	n	ENSMUSG00000028522.17	Mier1	chr4	protein_coding	MEIR1 treanscription regulator
novel_NIR_12946	chr4	102972857	102984470	+	102972857;102975512	102975478;102984470	ES	ENSMUST00000137348.8	novel	0.00	0	1.5	0	0;3	n	0.00	0	4.0	0	1;7	n	0.00	0	6.5	0	3;10	n	0.00	0	4.5	0	0;9	n	0.00	0	4.0	0	0;8	n	0.00	0	5.0	0	0;10	n	0.00	0	1.5	0	0;3	n	0.00	0	4.5	0	0;9	n	0.60	3	2.0	3	1;3	y	0.00	0	5.5	0	1;10	n	0.00	0	1.5	0	1;2	n	0.00	0	4.0	0	1;7	n	ENSMUSG00000028522.17	Mier1	chr4	protein_coding	MEIR1 treanscription regulator
novel_NIR_12947	chr4	102972857	102984470	+	102976706	102984470	5pMXE	ENSMUST00000106857.8	novel	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	18	0	18	n	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.38	3	5	3	5	y	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	23	0	23	n	ENSMUSG00000028522.17	Mier1	chr4	protein_coding	MEIR1 treanscription regulator
novel_NIR_12948	chr4	102977130	102984470	+	102975512	102984470	A5SS	ENSMUST00000106858.8	novel	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.10	1	9	1	9	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.50	2	2	2	2	y	0.00	0	7	0	7	n	ENSMUSG00000028522.17	Mier1	chr4	protein_coding	MEIR1 treanscription regulator
novel_NIR_12949	chr4	103054575	103062303	-	103042101	103062303	A3SS	ENSMUST00000150285.8	novel	1.00	2	0	2	0	y	1.00	12	0	12	0	y	1.00	5	0	5	0	y	0.80	8	2	8	2	y	1.00	7	0	7	0	y	0.00	0	1	0	1	n	0.86	6	1	6	1	y	0.00	0	1	0	1	n	1.00	5	0	5	0	y	1.00	5	0	5	0	y	1.00	7	0	7	0	y	1.00	2	0	2	0	y	ENSMUSG00000028521.18	Slc35d1	chr4	protein_coding	solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1
novel_NIR_12950	chr4	103054575	103062303	-	103048096	103062303	A3SS	ENSMUST00000036195.13	novel	0.03	2	75	2	75	n	0.16	12	62	12	62	y	0.04	5	119	5	119	n	0.05	8	147	8	147	n	0.04	7	154	7	154	n	0.00	0	61	0	61	n	0.05	6	122	6	122	n	0.00	0	77	0	77	n	0.06	5	78	5	78	n	0.03	5	188	5	188	n	0.08	7	82	7	82	n	0.01	2	141	2	141	n	ENSMUSG00000028521.18	Slc35d1	chr4	protein_coding	solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1
novel_NIR_12951	chr4	103059558	103062303	-	103042101	103062303	A3SS	ENSMUST00000150285.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.80	4	1	4	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000028521.18	Slc35d1	chr4	protein_coding	solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1
novel_NIR_12952	chr4	103171080	103173441	+	103171080	103176219	A3SS	ENSMUST00000035780.4	novel	0.22	4	14	4	14	n	0.00	0	16	0	16	n	0.15	4	22	4	22	y	0.09	3	30	3	30	n	0.19	4	17	4	17	n	0.20	3	12	3	12	n	0.06	1	15	1	15	n	0.11	2	16	2	16	n	0.06	1	16	1	16	n	0.06	1	16	1	16	n	0.00	0	13	0	13	n	0.11	2	16	2	16	n	ENSMUSG00000035069.4	Oma1	chr4	protein_coding	OMA1 zinc metallopeptidase
novel_NIR_12953	chr4	103171080	103182216	+	103181772	103182216	5pMXE	ENSMUST00000143399.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035069.4	Oma1	chr4	protein_coding	OMA1 zinc metallopeptidase
novel_NIR_12954	chr4	103171080;103173535	103173441;103176219	+	103171080	103176219	cassetteExon	ENSMUST00000035780.4	novel	0.20	3.5	14	4;3	14	y	0.11	2.0	16	0;4	16	n	0.08	2.0	22	4;0	22	n	0.12	4.0	30	3;5	30	n	0.24	5.5	17	4;7	17	y	0.20	3.0	12	3;3	12	y	0.14	2.5	15	1;4	15	n	0.18	3.5	16	2;5	16	y	0.06	1.0	16	1;1	16	n	0.22	4.5	16	1;8	16	n	0.04	0.5	13	0;1	13	n	0.11	2.0	16	2;2	16	n	ENSMUSG00000035069.4	Oma1	chr4	protein_coding	OMA1 zinc metallopeptidase
novel_NIR_12955	chr4	103173535	103176219	+	103171080	103176219	A5SS	ENSMUST00000035780.4	novel	0.18	3	14	3	14	n	0.20	4	16	4	16	y	0.00	0	22	0	22	n	0.14	5	30	5	30	n	0.29	7	17	7	17	n	0.20	3	12	3	12	n	0.21	4	15	4	15	n	0.24	5	16	5	16	n	0.06	1	16	1	16	n	0.33	8	16	8	16	n	0.07	1	13	1	13	n	0.11	2	16	2	16	n	ENSMUSG00000035069.4	Oma1	chr4	protein_coding	OMA1 zinc metallopeptidase
novel_NIR_12956	chr4	103176725	103182216	+	103181772	103182216	5pMXE	ENSMUST00000143399.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035069.4	Oma1	chr4	protein_coding	OMA1 zinc metallopeptidase
novel_NIR_12957	chr4	103182597	103188502	+	103182597	103186035	3pMXE	ENSMUST00000143399.2	novel	0.02	1	48	1	48	n	0.16	6	31	6	31	y	0.05	1	21	1	21	n	0.05	3	60	3	60	n	0.31	15	34	15	34	y	0.11	2	16	2	16	n	0.11	8	68	8	68	n	0.23	5	17	5	17	y	0.17	5	24	5	24	y	0.14	8	49	8	49	n	0.15	6	33	6	33	y	0.09	4	42	4	42	n	ENSMUSG00000035069.4	Oma1	chr4	protein_coding	OMA1 zinc metallopeptidase
novel_NIR_12958	chr4	103182597	103188502	+	103182597;103186163	103186035;103188502	ES	ENSMUST00000035780.4	novel	0.02	1	47.0	1	48;46	n	0.14	6	37.0	6	31;43	n	0.03	1	31.5	1	21;42	n	0.06	3	51.5	3	60;43	n	0.27	15	41.0	15	34;48	y	0.11	2	16.5	2	16;17	n	0.12	8	57.0	8	68;46	n	0.17	5	24.0	5	17;31	y	0.16	5	27.0	5	24;30	y	0.11	8	63.5	8	49;78	n	0.13	6	39.5	6	33;46	n	0.08	4	44.5	4	42;47	n	ENSMUSG00000035069.4	Oma1	chr4	protein_coding	OMA1 zinc metallopeptidase
novel_NIR_12959	chr4	103182597	103188502	+	103186163	103188502	5pMXE	ENSMUST00000133178.2	novel	0.02	1	46	1	46	n	0.12	6	43	6	43	n	0.02	1	42	1	42	n	0.07	3	43	3	43	n	0.24	15	48	15	48	y	0.11	2	17	2	17	n	0.15	8	46	8	46	y	0.14	5	31	5	31	n	0.14	5	30	5	30	n	0.09	8	78	8	78	n	0.12	6	46	6	46	n	0.08	4	47	4	47	n	ENSMUSG00000035069.4	Oma1	chr4	protein_coding	OMA1 zinc metallopeptidase
novel_NIR_12960	chr4	103188576	103223170	+	103188576	103210699	A3SS&ES	ENSMUST00000133178.2	novel	0.08	4	48	4	48	n	0.07	3	42	3	42	n	0.00	0	30	0	30	n	0.04	2	46	2	46	n	0.10	6	57	6	57	n	0.15	4	22	4	22	y	0.03	2	63	2	63	n	0.00	0	29	0	29	n	0.00	0	40	0	40	n	0.00	0	55	0	55	n	0.00	0	50	0	50	n	0.07	2	27	2	27	n	ENSMUSG00000035069.4	Oma1	chr4	protein_coding	OMA1 zinc metallopeptidase
novel_NIR_12961	chr4	103188576	103223170	+	103188576;103210848	103210699;103223170	ES	ENSMUST00000035780.4	novel	0.07	4	57.5	4	48;67	n	0.06	3	51.0	3	42;60	n	0.00	0	37.0	0	30;44	n	0.04	2	43.5	2	46;41	n	0.09	6	58.0	6	57;59	n	0.15	4	23.5	4	22;25	y	0.03	2	72.5	2	63;82	n	0.00	0	35.5	0	29;42	n	0.00	0	48.5	0	40;57	n	0.00	0	73.5	0	55;92	n	0.00	0	61.5	0	50;73	n	0.04	2	43.0	2	27;59	n	ENSMUSG00000035069.4	Oma1	chr4	protein_coding	OMA1 zinc metallopeptidase
novel_NIR_12962	chr4	103210848	103213626	+	103210848	103228929	A3SS	ENSMUST00000133178.2	novel	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.14	1	6	1	6	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000035069.4	Oma1	chr4	protein_coding	OMA1 zinc metallopeptidase
novel_NIR_12963	chr4	103252575	103262500	+	103261919	103262500	A5SS&ES	ENSMUST00000156144.2	novel	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	8	0	8	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	8	0	8	0	y	ENSMUSG00000086136.2	Gm12718	chr4	lncRNA	predicted gene 12718
novel_NIR_12964	chr4	103252575	103348792	+	103262559	103348792	A5SS&ES	ENSMUST00000156144.2	novel	0.00	0	7	0	7	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.12	1	7	1	7	n	0.40	4	6	4	6	y	0.00	0	5	0	5	n	0.00	0	10	0	10	n	ENSMUSG00000086136.2	Gm12718	chr4	lncRNA	predicted gene 12718
novel_NIR_12965	chr4	103252575	103348792	+	103291129	103348792	A5SS&ES	ENSMUST00000150345.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.17	1	5	1	5	n	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000086136.2	Gm12718	chr4	lncRNA	predicted gene 12718
novel_NIR_12966	chr4	103262559	103263219	+	103262559	103348792	A3SS	ENSMUST00000156144.2	novel	0.00	0	7	0	7	n	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.23	3	10	3	10	y	ENSMUSG00000086136.2	Gm12718	chr4	lncRNA	predicted gene 12718
novel_NIR_12967	chr4	104673375	104674750	-	104673106	104674750	A3SS	ENSMUST00000048947.15	novel	0.00	0	96	0	96	n	0.00	0	131	0	131	n	0.00	0	166	0	166	n	0.00	0	92	0	92	n	0.00	0	127	0	127	n	0.00	0	73	0	73	n	0.00	0	132	0	132	n	0.21	28	103	28	103	y	0.00	0	76	0	76	n	0.00	0	139	0	139	n	0.00	0	112	0	112	n	0.00	0	114	0	114	n	ENSMUSG00000035031.16	C8a	chr4	protein_coding	complement component 8, alpha polypeptide
novel_NIR_12968	chr4	104703330	104710939	-	104673309	104710939	A3SS	ENSMUST00000152146.2	novel	0.44	25	32	25	32	y	1.00	2	0	2	0	y	1.00	28	0	28	0	y	1.00	32	0	32	0	y	1.00	51	0	51	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	20	0	20	0	y	0.35	39	74	39	74	y	1.00	2	0	2	0	y	1.00	39	0	39	0	y	ENSMUSG00000035031.16	C8a	chr4	protein_coding	complement component 8, alpha polypeptide
novel_NIR_12969	chr4	104719937	104733606	-	104719937	104733477	5pMXE	ENSMUST00000106808.10	novel	0.18	12	53	12	53	y	0.08	6	72	6	72	n	0.04	4	86	4	86	n	0.18	18	83	18	83	y	0.07	7	97	7	97	n	0.02	1	60	1	60	n	0.04	3	70	3	70	n	0.03	3	89	3	89	n	0.05	4	83	4	83	n	0.06	9	145	9	145	n	0.10	8	69	8	69	n	0.13	15	100	15	100	n	ENSMUSG00000035031.16	C8a	chr4	protein_coding	complement component 8, alpha polypeptide
novel_NIR_12970	chr4	104817041	104836183	+	104808083	104836183	A5SS	ENSMUST00000106803.9	novel	0.09	1	10	1	10	n	0.00	0	5	0	5	n	0.00	0	21	0	21	n	0.00	0	8	0	8	n	0.00	0	18	0	18	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	20	0	20	n	0.00	0	13	0	13	n	0.38	3	5	3	5	y	0.00	0	10	0	10	n	0.00	0	19	0	19	n	ENSMUSG00000078612.10	Fyb2	chr4	protein_coding	FYN binding protein 2
novel_NIR_12971	chr4	104856586	104857623	+	104856586	104857618	A3SS	ENSMUST00000106803.9	novel	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.04	1	22	1	22	n	0.00	0	10	0	10	n	0.00	0	21	0	21	n	0.15	4	22	4	22	y	0.00	0	17	0	17	n	0.09	4	39	4	39	n	0.00	0	11	0	11	n	0.08	1	12	1	12	n	0.00	0	13	0	13	n	0.00	0	20	0	20	n	ENSMUSG00000078612.10	Fyb2	chr4	protein_coding	FYN binding protein 2
novel_NIR_12972	chr4	104861142	104862458	+	104861142	104867648	A3SS	ENSMUST00000106803.9	novel	0.00	0	5	0	5	n	0.11	1	8	1	8	n	0.00	0	13	0	13	n	0.07	1	14	1	14	n	0.00	0	19	0	19	n	0.25	3	9	3	9	y	0.11	1	8	1	8	n	0.06	1	17	1	17	n	0.00	0	9	0	9	n	0.08	1	12	1	12	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	ENSMUSG00000078612.10	Fyb2	chr4	protein_coding	FYN binding protein 2
novel_NIR_12973	chr4	104861142	104870485	+	104861142;104867734	104867648;104870485	ES	ENSMUST00000106803.9	novel	0.00	0	7.0	0	5;9	n	0.00	0	7.0	0	8;6	n	0.22	4	14.0	4	13;15	y	0.00	0	11.5	0	14;9	n	0.11	2	16.5	2	19;14	n	0.15	2	11.0	2	9;13	y	0.11	1	8.5	1	8;9	n	0.20	5	19.5	5	17;22	y	0.00	0	11.0	0	9;13	n	0.10	1	9.0	1	12;6	n	0.18	2	9.0	2	6;12	y	0.14	3	18.0	3	16;20	n	ENSMUSG00000078612.10	Fyb2	chr4	protein_coding	FYN binding protein 2
novel_NIR_12974	chr4	106390034	106392091	-	106360078	106392091	A3SS	ENSMUST00000239042.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000085933.4	Tmem61	chr4	protein_coding	transmembrane protein 61
novel_NIR_12975	chr4	106390034	106392091	-	106360287	106392091	A3SS	ENSMUST00000239147.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000085933.4	Tmem61	chr4	protein_coding	transmembrane protein 61
novel_NIR_12976	chr4	106628753	106657422	-	106628753	106656881	5pMXE	ENSMUST00000102762.10	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000034853.17	Acot11	chr4	protein_coding	acyl-CoA thioesterase 11
novel_NIR_12977	chr4	106628753	106657422	-	106628753	106657407	A5SS	ENSMUST00000148688.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000034853.17	Acot11	chr4	protein_coding	acyl-CoA thioesterase 11
novel_NIR_12978	chr4	106628753	106657422	-	106628753	106662103	A5SS	ENSMUST00000065253.13	novel	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034853.17	Acot11	chr4	protein_coding	acyl-CoA thioesterase 11
novel_NIR_12979	chr4	106628753	106660184	-	106628753	106656881	5pMXE	ENSMUST00000102762.10	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000034853.17	Acot11	chr4	protein_coding	acyl-CoA thioesterase 11
novel_NIR_12980	chr4	106628753	106660184	-	106628753	106657407	5pMXE	ENSMUST00000148688.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000034853.17	Acot11	chr4	protein_coding	acyl-CoA thioesterase 11
novel_NIR_12981	chr4	106628753	106660184	-	106628753	106662103	A5SS	ENSMUST00000065253.13	novel	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.14	2	12	2	12	n	0.00	0	1	0	1	n	0.22	2	7	2	7	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034853.17	Acot11	chr4	protein_coding	acyl-CoA thioesterase 11
novel_NIR_12982	chr4	106628753	106661292	-	106628753	106656881	5pMXE	ENSMUST00000102762.10	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000034853.17	Acot11	chr4	protein_coding	acyl-CoA thioesterase 11
novel_NIR_12983	chr4	106628753	106661292	-	106628753	106657407	5pMXE	ENSMUST00000148688.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000034853.17	Acot11	chr4	protein_coding	acyl-CoA thioesterase 11
novel_NIR_12984	chr4	106928215	106930718	+	106928215	106931070	A3SS	ENSMUST00000156406.8	novel	0.00	0	20	0	20	n	0.00	0	19	0	19	n	0.18	2	9	2	9	y	0.00	0	21	0	21	n	0.03	1	28	1	28	n	0.00	0	6	0	6	n	0.00	0	24	0	24	n	0.00	0	20	0	20	n	0.00	0	22	0	22	n	0.00	0	34	0	34	n	0.00	0	22	0	22	n	0.00	0	31	0	31	n	ENSMUSG00000028621.18	Cyb5rl	chr4	protein_coding	cytochrome b5 reductase-like
novel_NIR_12985	chr4	107034901	107036094	-	107034901	107035137	5pMXE	ENSMUST00000147375.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000028619.16	Tceanc2	chr4	protein_coding	transcription elongation factor A (SII) N-terminal and central domain containing 2
novel_NIR_12986	chr4	107034901	107036094	-	107034901	107036109	A5SS	ENSMUST00000030362.12	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.50	1	1	1	1	n	1.00	2	0	2	0	y	ENSMUSG00000028619.16	Tceanc2	chr4	protein_coding	transcription elongation factor A (SII) N-terminal and central domain containing 2
novel_NIR_12987	chr4	107034901	107036094	-	107034901	107036160	A5SS	ENSMUST00000141165.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000028619.16	Tceanc2	chr4	protein_coding	transcription elongation factor A (SII) N-terminal and central domain containing 2
novel_NIR_12988	chr4	107104977	107105089	-	107104977	107110315	A5SS	ENSMUST00000156771.2	novel	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000028617.11	Lrrc42	chr4	protein_coding	leucine rich repeat containing 42
novel_NIR_12989	chr4	107104977	107105277	-	107104977	107110315	A5SS	ENSMUST00000156771.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	ENSMUSG00000028617.11	Lrrc42	chr4	protein_coding	leucine rich repeat containing 42
novel_NIR_12990	chr4	107110576	107119664	+	107110924	107119664	5pMXE	ENSMUST00000152717.8	novel	0.50	1	1	1	1	n	1.00	9	0	9	0	y	1.00	6	0	6	0	y	0.50	1	1	1	1	n	0.91	10	1	10	1	y	1.00	2	0	2	0	y	0.88	7	1	7	1	y	1.00	12	0	12	0	y	1.00	6	0	6	0	y	0.71	10	4	10	4	y	0.75	6	2	6	2	y	0.75	6	2	6	2	y	ENSMUSG00000063172.14	Hspb11	chr4	protein_coding	heat shock protein family B (small), member 11
novel_NIR_12991	chr4	107110576	107119664	+	107111159	107119664	5pMXE	ENSMUST00000106749.8	novel	0.09	1	10	1	10	n	0.60	9	6	9	6	y	0.46	6	7	6	7	y	0.17	1	5	1	5	n	0.53	10	9	10	9	y	0.67	2	1	2	1	y	0.41	7	10	7	10	y	0.86	12	2	12	2	y	0.75	6	2	6	2	y	0.59	10	7	10	7	y	0.40	6	9	6	9	y	1.00	6	0	6	0	y	ENSMUSG00000063172.14	Hspb11	chr4	protein_coding	heat shock protein family B (small), member 11
novel_NIR_12992	chr4	107110576	107119664	+	107111192	107119664	5pMXE	ENSMUST00000156934.8	novel	0.20	1	4	1	4	n	0.56	9	7	9	7	y	0.38	6	10	6	10	y	0.11	1	8	1	8	n	0.59	10	7	10	7	y	0.33	2	4	2	4	y	0.32	7	15	7	15	y	0.80	12	3	12	3	y	0.67	6	3	6	3	y	0.43	10	13	10	13	y	0.67	6	3	6	3	y	0.33	6	12	6	12	y	ENSMUSG00000063172.14	Hspb11	chr4	protein_coding	heat shock protein family B (small), member 11
novel_NIR_12993	chr4	107110582	107119664	+	107110924	107119664	5pMXE	ENSMUST00000152717.8	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.83	5	1	5	1	y	-	-	-	-	-	-	0.67	2	1	2	1	y	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.60	3	2	3	2	y	0.00	0	2	0	2	n	ENSMUSG00000063172.14	Hspb11	chr4	protein_coding	heat shock protein family B (small), member 11
novel_NIR_12994	chr4	107110582	107119664	+	107111159	107119664	5pMXE	ENSMUST00000106749.8	novel	0.09	1	10	1	10	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.36	5	9	5	9	y	0.00	0	1	0	1	n	0.17	2	10	2	10	y	0.60	3	2	3	2	y	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.25	3	9	3	9	y	-	-	-	-	-	-	ENSMUSG00000063172.14	Hspb11	chr4	protein_coding	heat shock protein family B (small), member 11
novel_NIR_12995	chr4	107110582	107119664	+	107111192	107119664	5pMXE	ENSMUST00000156934.8	novel	0.20	1	4	1	4	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.42	5	7	5	7	y	0.00	0	4	0	4	n	0.12	2	15	2	15	n	0.50	3	3	3	3	y	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.50	3	3	3	3	y	0.00	0	12	0	12	n	ENSMUSG00000063172.14	Hspb11	chr4	protein_coding	heat shock protein family B (small), member 11
novel_NIR_12996	chr4	107119776	107130839	+	107119776	107120686	3pMXE	ENSMUST00000156934.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000063172.14	Hspb11	chr4	protein_coding	heat shock protein family B (small), member 11
novel_NIR_12997	chr4	107119776	107130839	+	107119776	107135124	A3SS	ENSMUST00000137911.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000063172.14	Hspb11	chr4	protein_coding	heat shock protein family B (small), member 11
novel_NIR_12998	chr4	107151145	107151217	-	107151145	107163979	A5SS	ENSMUST00000129138.2	novel	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.38	3	5	3	5	y	0.33	2	4	2	4	y	0.38	3	5	3	5	y	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000034785.16	Dio1	chr4	protein_coding	deiodinase, iodothyronine, type I
novel_NIR_12999	chr4	107154933	107163979	-	107149619	107163979	A3SS	ENSMUST00000106748.2	novel	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	12	0	12	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	11	0	11	0	y	-	-	-	-	-	-	ENSMUSG00000034785.16	Dio1	chr4	protein_coding	deiodinase, iodothyronine, type I
novel_NIR_13000	chr4	107154933	107163979	-	107151145	107163979	A3SS	ENSMUST00000129138.2	novel	0.86	6	1	6	1	y	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.44	4	5	4	5	y	0.00	0	4	0	4	n	0.29	2	5	2	5	y	0.63	12	7	12	7	y	0.50	3	3	3	3	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.92	11	1	11	1	y	-	-	-	-	-	-	ENSMUSG00000034785.16	Dio1	chr4	protein_coding	deiodinase, iodothyronine, type I
novel_NIR_13001	chr4	107154933	107163979	-	107157293	107163979	3pMXE	ENSMUST00000145332.2	novel	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	12	0	12	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	11	0	11	0	y	-	-	-	-	-	-	ENSMUSG00000034785.16	Dio1	chr4	protein_coding	deiodinase, iodothyronine, type I
novel_NIR_13002	chr4	107154937	107164101	-	107154937	107164088	A5SS	ENSMUST00000134366.8	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.44	4	5	4	5	y	-	-	-	-	-	-	ENSMUSG00000034785.16	Dio1	chr4	protein_coding	deiodinase, iodothyronine, type I
novel_NIR_13003	chr4	107176302	107192206	+	107176302	107193634	A3SS	ENSMUST00000139527.8	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	ENSMUSG00000057375.14	Yipf1	chr4	protein_coding	Yip1 domain family, member 1
novel_NIR_13004	chr4	107176302	107192206	+	107176302	107207611	A3SS	ENSMUST00000124254.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000057375.14	Yipf1	chr4	protein_coding	Yip1 domain family, member 1
novel_NIR_13005	chr4	107176302	107192206	+	107181918	107192206	5pMXE	ENSMUST00000128507.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000057375.14	Yipf1	chr4	protein_coding	Yip1 domain family, member 1
novel_NIR_13006	chr4	107198299	107201721	+	107198299	107201685	A3SS	ENSMUST00000128284.8	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000057375.14	Yipf1	chr4	protein_coding	Yip1 domain family, member 1
novel_NIR_13007	chr4	107202388	107206848	+	107202388	107216804	A3SS	ENSMUST00000143106.2	novel	0.00	0	7	0	7	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	ENSMUSG00000057375.14	Yipf1	chr4	protein_coding	Yip1 domain family, member 1
novel_NIR_13008	chr4	107207712	107216804	+	107202388	107216804	A5SS	ENSMUST00000143106.2	novel	0.00	0	7	0	7	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.21	3	11	3	11	y	0.00	0	9	0	9	n	0.00	0	12	0	12	n	ENSMUSG00000057375.14	Yipf1	chr4	protein_coding	Yip1 domain family, member 1
novel_NIR_13009	chr4	107225599	107225954	+	107225345	107225954	A5SS	ENSMUST00000139560.8	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.25	2	6	2	6	y	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000028614.15	Ndc1	chr4	protein_coding	NDC1 transmembrane nucleoporin
novel_NIR_13010	chr4	107231518	107232280	+	107231518	107232275	A3SS	ENSMUST00000139560.8	novel	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.20	2	8	2	8	y	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	ENSMUSG00000028614.15	Ndc1	chr4	protein_coding	NDC1 transmembrane nucleoporin
novel_NIR_13011	chr4	107761760	107764104	-	107761760	107769838	A5SS	ENSMUST00000106720.9	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000028607.17	Cpt2	chr4	protein_coding	carnitine palmitoyltransferase 2
novel_NIR_13012	chr4	107765422	107767996	-	107765422	107771461	A5SS	ENSMUST00000141738.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028607.17	Cpt2	chr4	protein_coding	carnitine palmitoyltransferase 2
novel_NIR_13013	chr4	107768096	107769838	-	107761760	107769838	A3SS	ENSMUST00000106720.9	novel	-	-	-	-	-	-	0.50	1	1	1	1	n	0.29	2	5	2	5	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.80	4	1	4	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028607.17	Cpt2	chr4	protein_coding	carnitine palmitoyltransferase 2
novel_NIR_13014	chr4	107768096	107769838	-	107765284	107769838	A3SS	ENSMUST00000106719.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.25	2	6	2	6	y	0.08	1	12	1	12	n	-	-	-	-	-	-	-	-	-	-	-	-	0.27	4	11	4	11	y	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	ENSMUSG00000028607.17	Cpt2	chr4	protein_coding	carnitine palmitoyltransferase 2
novel_NIR_13015	chr4	107770051	107771461	-	107765422	107771461	A3SS	ENSMUST00000141738.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028607.17	Cpt2	chr4	protein_coding	carnitine palmitoyltransferase 2
novel_NIR_13016	chr4	107880609	107882713	-	107880609	107881474	5pMXE	ENSMUST00000146851.8	novel	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.18	2	9	2	9	y	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000028600.16	Podn	chr4	protein_coding	podocan
novel_NIR_13017	chr4	107880609	107882713	-	107880609;107881538	107881474;107882713	ES	ENSMUST00000106709.9	novel	0.00	0	1.0	0	1;1	n	0.00	0	5.0	0	6;4	n	0.00	0	5.5	0	3;8	n	0.00	0	6.5	0	6;7	n	0.00	0	2.0	0	2;2	n	-	-	-	-	-	-	0.22	2	7.0	2	9;5	y	0.00	0	2.0	0	2;2	n	0.33	1	2.0	1	3;1	n	0.14	1	6.0	1	5;7	n	0.00	0	3.0	0	3;3	n	0.00	0	1.5	0	2;1	n	ENSMUSG00000028600.16	Podn	chr4	protein_coding	podocan
novel_NIR_13018	chr4	107969481	107971080	-	107969481	108001589	A5SS	ENSMUST00000143340.2	novel	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	16	0	16	0	y	1.00	14	0	14	0	y	1.00	17	0	17	0	y	1.00	6	0	6	0	y	1.00	16	0	16	0	y	1.00	2	0	2	0	y	1.00	6	0	6	0	y	1.00	7	0	7	0	y	1.00	5	0	5	0	y	0.85	11	2	11	2	y	ENSMUSG00000028603.16	Scp2	chr4	protein_coding	sterol carrier protein 2, liver
novel_NIR_13019	chr4	107969481	107971080	-	107969481	108001978	A5SS	ENSMUST00000130776.2	novel	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	16	0	16	0	y	1.00	14	0	14	0	y	1.00	17	0	17	0	y	1.00	6	0	6	0	y	1.00	16	0	16	0	y	1.00	2	0	2	0	y	1.00	6	0	6	0	y	1.00	7	0	7	0	y	1.00	5	0	5	0	y	1.00	11	0	11	0	y	ENSMUSG00000028603.16	Scp2	chr4	protein_coding	sterol carrier protein 2, liver
novel_NIR_13020	chr4	107969481	107971292	-	107969481	108001589	A5SS	ENSMUST00000143340.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	12	0	12	0	y	1.00	9	0	9	0	y	1.00	3	0	3	0	y	1.00	13	0	13	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	4	0	4	0	y	0.78	7	2	7	2	y	ENSMUSG00000028603.16	Scp2	chr4	protein_coding	sterol carrier protein 2, liver
novel_NIR_13021	chr4	107969481	107971292	-	107969481	108001978	A5SS	ENSMUST00000130776.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	12	0	12	0	y	1.00	9	0	9	0	y	1.00	3	0	3	0	y	1.00	13	0	13	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	4	0	4	0	y	1.00	7	0	7	0	y	ENSMUSG00000028603.16	Scp2	chr4	protein_coding	sterol carrier protein 2, liver
novel_NIR_13022	chr4	108022858	108023802	+	108022858	108027058	A3SS	ENSMUST00000125647.8	novel	0.00	0	9	0	9	n	0.07	1	14	1	14	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.22	2	7	2	7	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.18	2	9	2	9	y	ENSMUSG00000028601.19	Echdc2	chr4	protein_coding	enoyl Coenzyme A hydratase domain containing 2
novel_NIR_13023	chr4	108026974	108027058	+	108022858	108027058	A5SS	ENSMUST00000125647.8	novel	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.29	2	5	2	5	y	0.00	0	9	0	9	n	ENSMUSG00000028601.19	Echdc2	chr4	protein_coding	enoyl Coenzyme A hydratase domain containing 2
novel_NIR_13024	chr4	108027145	108027389	+	108027145	108031184	A3SS	ENSMUST00000138701.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	ENSMUSG00000028601.19	Echdc2	chr4	protein_coding	enoyl Coenzyme A hydratase domain containing 2
novel_NIR_13025	chr4	108027145	108028098	+	108027145	108031184	A3SS	ENSMUST00000138701.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028601.19	Echdc2	chr4	protein_coding	enoyl Coenzyme A hydratase domain containing 2
novel_NIR_13026	chr4	108027145	108029292	+	108027145	108031184	A3SS	ENSMUST00000138701.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	10	0	10	0	y	-	-	-	-	-	-	0.85	11	2	11	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	10	0	10	0	y	1.00	19	0	19	0	y	ENSMUSG00000028601.19	Echdc2	chr4	protein_coding	enoyl Coenzyme A hydratase domain containing 2
novel_NIR_13027	chr4	108036023	108036104	+	108034320	108036104	A5SS	ENSMUST00000106691.3	novel	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.13	2	13	2	13	n	0.11	1	8	1	8	n	0.21	3	11	3	11	n	0.00	0	14	0	14	n	0.11	1	8	1	8	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.09	1	10	1	10	n	0.00	0	6	0	6	n	0.29	2	5	2	5	y	ENSMUSG00000028601.19	Echdc2	chr4	protein_coding	enoyl Coenzyme A hydratase domain containing 2
novel_NIR_13028	chr4	108067418	108082441	-	108067418	108075030	5pMXE	ENSMUST00000223127.2	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.15	3	17	3	17	y	0.33	1	2	1	2	n	0.14	1	6	1	6	n	0.29	2	5	2	5	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	14	0	14	n	ENSMUSG00000034645.15	Zyg11a	chr4	protein_coding	zyg-11 family member A, cell cycle regulator
novel_NIR_13029	chr4	108067418	108082441	-	108067418	108075036	5pMXE	ENSMUST00000043793.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034645.15	Zyg11a	chr4	protein_coding	zyg-11 family member A, cell cycle regulator
novel_NIR_13030	chr4	108380504	108381245	+	108380504	108381268	A3SS	ENSMUST00000155068.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034610.15	Tut4	chr4	protein_coding	terminal uridylyl transferase 4
novel_NIR_13031	chr4	108405367	108406426	+	108405367	108406423	A3SS	ENSMUST00000097925.9	novel	0.60	6	4	6	4	y	0.75	3	1	3	1	y	0.76	13	4	13	4	y	0.56	5	4	5	4	y	0.22	2	7	2	7	y	0.33	2	4	2	4	y	0.70	7	3	7	3	y	0.71	5	2	5	2	y	0.25	3	9	3	9	y	0.23	3	10	3	10	y	0.46	6	7	6	7	y	0.29	4	10	4	10	y	ENSMUSG00000034610.15	Tut4	chr4	protein_coding	terminal uridylyl transferase 4
novel_NIR_13032	chr4	108405367	108406426	+	108405367	108406438	A3SS	ENSMUST00000043368.12	novel	0.33	6	12	6	12	y	0.38	3	5	3	5	y	0.34	13	25	13	25	y	0.21	5	19	5	19	y	0.10	2	18	2	18	n	0.18	2	9	2	9	y	0.37	7	12	7	12	y	0.24	5	16	5	16	y	0.14	3	18	3	18	n	0.21	3	11	3	11	y	0.35	6	11	6	11	y	0.12	4	28	4	28	n	ENSMUSG00000034610.15	Tut4	chr4	protein_coding	terminal uridylyl transferase 4
novel_NIR_13033	chr4	108482201	108482505	+	108482201	108482531	A3SS	ENSMUST00000139962.8	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000028582.15	Cc2d1b	chr4	protein_coding	coiled-coil and C2 domain containing 1B
novel_NIR_13034	chr4	108482201	108482505	+	108482201	108482605	A3SS	ENSMUST00000030320.13	novel	0.29	4	10	4	10	y	0.00	0	10	0	10	n	0.09	1	10	1	10	n	0.00	0	11	0	11	n	0.04	1	23	1	23	n	0.00	0	12	0	12	n	0.00	0	21	0	21	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.00	0	20	0	20	n	0.00	0	7	0	7	n	0.20	1	4	1	4	n	ENSMUSG00000028582.15	Cc2d1b	chr4	protein_coding	coiled-coil and C2 domain containing 1B
novel_NIR_13035	chr4	108485399	108485760	+	108485399	108485780	A3SS	ENSMUST00000030320.13	novel	0.00	0	31	0	31	n	0.08	1	11	1	11	n	0.00	0	19	0	19	n	0.00	0	16	0	16	n	0.09	3	31	3	31	n	0.00	0	13	0	13	n	0.00	0	22	0	22	n	0.25	2	6	2	6	y	0.00	0	17	0	17	n	0.00	0	15	0	15	n	0.00	0	24	0	24	n	0.00	0	16	0	16	n	ENSMUSG00000028582.15	Cc2d1b	chr4	protein_coding	coiled-coil and C2 domain containing 1B
novel_NIR_13036	chr4	108487503	108487741	+	108487503	108487602	3pMXE	ENSMUST00000176877.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000028582.15	Cc2d1b	chr4	protein_coding	coiled-coil and C2 domain containing 1B
novel_NIR_13037	chr4	108688925	108690705	-	108689648	108690705	A3SS&ES	ENSMUST00000102740.8	novel	-	-	-	-	-	-	0.27	3	8	3	8	y	0.00	0	7	0	7	n	0.25	1	3	1	3	n	0.25	2	6	2	6	y	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.56	5	4	5	4	y	1.00	2	0	2	0	y	ENSMUSG00000028568.17	Btf3l4	chr4	protein_coding	basic transcription factor 3-like 4
novel_NIR_13038	chr4	108871037	108874824	+	108871037;108873982	108873849;108874824	ES	ENSMUST00000106644.9	novel	0.00	0	2.0	0	2;2	n	0.00	0	3.5	0	5;2	n	0.16	3	15.5	3	25;6	y	0.00	0	3.0	0	4;2	n	0.00	0	9.0	0	5;13	n	0.00	0	9.5	0	12;7	n	0.00	0	9.5	0	13;6	n	0.00	0	8.5	0	13;4	n	0.00	0	3.5	0	5;2	n	0.00	0	4.0	0	7;1	n	0.00	0	3.0	0	3;3	n	0.00	0	4.0	0	4;4	n	ENSMUSG00000053510.13	Nrd1	chr4	protein_coding	nardilysin, N-arginine dibasic convertase, NRD convertase 1
novel_NIR_13039	chr4	108871039	108875036	+	108874893	108875036	A5SS&ES	ENSMUST00000106644.9	novel	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	21	0	21	n	0.17	2	10	2	10	y	0.05	1	19	1	19	n	0.00	0	3	0	3	n	0.00	0	18	0	18	n	0.08	1	11	1	11	n	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	ENSMUSG00000053510.13	Nrd1	chr4	protein_coding	nardilysin, N-arginine dibasic convertase, NRD convertase 1
novel_NIR_13040	chr4	108930346	108943524	-	108930346	108955700	A5SS	ENSMUST00000126288.8	novel	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.43	3	4	3	4	y	0.50	1	1	1	1	n	0.67	2	1	2	1	y	1.00	1	0	1	0	n	0.40	2	3	2	3	y	0.38	3	5	3	5	y	0.00	0	4	0	4	n	0.42	5	7	5	7	y	ENSMUSG00000028559.18	Osbpl9	chr4	protein_coding	oxysterol binding protein-like 9
novel_NIR_13041	chr4	108940445	108955700	-	108930346	108955700	A3SS	ENSMUST00000126288.8	novel	0.20	1	4	1	4	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.33	2	4	2	4	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.29	2	5	2	5	y	0.20	1	4	1	4	n	0.00	0	7	0	7	n	ENSMUSG00000028559.18	Osbpl9	chr4	protein_coding	oxysterol binding protein-like 9
novel_NIR_13042	chr4	108959789	108971428	-	108959789	108966886	5pMXE	ENSMUST00000152167.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028559.18	Osbpl9	chr4	protein_coding	oxysterol binding protein-like 9
novel_NIR_13043	chr4	108959789	108971428	-	108959789	108974821	A5SS	ENSMUST00000126288.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028559.18	Osbpl9	chr4	protein_coding	oxysterol binding protein-like 9
novel_NIR_13044	chr4	108965146	108975092	-	108965146	108990941	A5SS	ENSMUST00000194478.6	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.20	2	8	2	8	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000028559.18	Osbpl9	chr4	protein_coding	oxysterol binding protein-like 9
novel_NIR_13045	chr4	108991017	108995722	-	108991017	109013554	A5SS	ENSMUST00000161363.2	novel	1.00	8	0	8	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	16	0	16	0	y	1.00	5	0	5	0	y	1.00	4	0	4	0	y	1.00	14	0	14	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	23	0	23	0	y	1.00	5	0	5	0	y	1.00	7	0	7	0	y	ENSMUSG00000028559.18	Osbpl9	chr4	protein_coding	oxysterol binding protein-like 9
novel_NIR_13046	chr4	108991017	108995722	-	108991017	109013852	A5SS	ENSMUST00000194478.6	novel	0.35	8	15	8	15	y	0.29	2	5	2	5	y	0.00	0	19	0	19	n	0.67	16	8	16	8	y	0.19	5	21	5	21	y	0.33	4	8	4	8	y	0.42	14	19	14	19	y	0.00	0	16	0	16	n	0.45	5	6	5	6	y	0.61	23	15	23	15	y	0.45	5	6	5	6	y	0.35	7	13	7	13	y	ENSMUSG00000028559.18	Osbpl9	chr4	protein_coding	oxysterol binding protein-like 9
novel_NIR_13047	chr4	108991017	108995722	-	108991017	109029471	A5SS	ENSMUST00000159545.8	novel	0.89	8	1	8	1	y	0.67	2	1	2	1	y	0.00	0	1	0	1	n	1.00	16	0	16	0	y	0.71	5	2	5	2	y	1.00	4	0	4	0	y	0.93	14	1	14	1	y	-	-	-	-	-	-	0.71	5	2	5	2	y	1.00	23	0	23	0	y	1.00	5	0	5	0	y	1.00	7	0	7	0	y	ENSMUSG00000028559.18	Osbpl9	chr4	protein_coding	oxysterol binding protein-like 9
novel_NIR_13048	chr4	108991017	108995742	-	108991017	109013554	A5SS	ENSMUST00000161363.2	novel	1.00	7	0	7	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	11	0	11	0	y	1.00	13	0	13	0	y	1.00	4	0	4	0	y	ENSMUSG00000028559.18	Osbpl9	chr4	protein_coding	oxysterol binding protein-like 9
novel_NIR_13049	chr4	108991017	108995742	-	108991017	109013852	A5SS	ENSMUST00000194478.6	novel	0.32	7	15	7	15	y	0.44	4	5	4	5	y	0.00	0	19	0	19	n	0.33	4	8	4	8	y	0.16	4	21	4	21	y	0.20	2	8	2	8	y	0.21	5	19	5	19	y	0.16	3	16	3	16	y	0.40	4	6	4	6	y	0.42	11	15	11	15	y	0.68	13	6	13	6	y	0.24	4	13	4	13	y	ENSMUSG00000028559.18	Osbpl9	chr4	protein_coding	oxysterol binding protein-like 9
novel_NIR_13050	chr4	108991017	108995742	-	108991017	109029471	A5SS	ENSMUST00000159545.8	novel	0.88	7	1	7	1	y	0.80	4	1	4	1	y	0.00	0	1	0	1	n	1.00	4	0	4	0	y	0.67	4	2	4	2	y	1.00	2	0	2	0	y	0.83	5	1	5	1	y	1.00	3	0	3	0	y	0.67	4	2	4	2	y	1.00	11	0	11	0	y	1.00	13	0	13	0	y	1.00	4	0	4	0	y	ENSMUSG00000028559.18	Osbpl9	chr4	protein_coding	oxysterol binding protein-like 9
novel_NIR_13051	chr4	108991017	108995814	-	108991017	109013554	A5SS	ENSMUST00000161363.2	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	6	0	6	0	y	-	-	-	-	-	-	ENSMUSG00000028559.18	Osbpl9	chr4	protein_coding	oxysterol binding protein-like 9
novel_NIR_13052	chr4	108991017	108995814	-	108991017	109013852	A5SS	ENSMUST00000194478.6	novel	0.06	1	15	1	15	n	0.29	2	5	2	5	y	0.00	0	19	0	19	n	0.27	3	8	3	8	y	0.00	0	21	0	21	n	0.00	0	8	0	8	n	0.24	6	19	6	19	y	0.00	0	16	0	16	n	0.33	3	6	3	6	y	0.06	1	15	1	15	n	0.50	6	6	6	6	y	0.00	0	13	0	13	n	ENSMUSG00000028559.18	Osbpl9	chr4	protein_coding	oxysterol binding protein-like 9
novel_NIR_13053	chr4	108991017	108995814	-	108991017	109029471	A5SS	ENSMUST00000159545.8	novel	0.50	1	1	1	1	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	1.00	3	0	3	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.86	6	1	6	1	y	-	-	-	-	-	-	0.60	3	2	3	2	y	1.00	1	0	1	0	n	1.00	6	0	6	0	y	-	-	-	-	-	-	ENSMUSG00000028559.18	Osbpl9	chr4	protein_coding	oxysterol binding protein-like 9
novel_NIR_13054	chr4	109013930	109333307	-	109013930	109014065	5pMXE	ENSMUST00000139248.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028559.18	Osbpl9	chr4	protein_coding	oxysterol binding protein-like 9
novel_NIR_13055	chr4	109013930	109333307	-	109013930	109059302	5pMXE	ENSMUST00000160774.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000028559.18	Osbpl9	chr4	protein_coding	oxysterol binding protein-like 9
novel_NIR_13056	chr4	109235538	109242516	+	109235538	109239982	3pMXE	ENSMUST00000177140.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028552.14	Eps15	chr4	protein_coding	epidermal growth factor receptor pathway substrate 15
novel_NIR_13057	chr4	109261466	109261709	-	109261362	109261709	A3SS	ENSMUST00000150239.2	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	4	0	4	0	y	0.25	1	3	1	3	n	1.00	3	0	3	0	y	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000085873.2	Ttc39aos1	chr4	lncRNA	Ttc39a opposite strand RNA 1
novel_NIR_13058	chr4	109261879	109262923	-	109261803	109262923	A3SS	ENSMUST00000150239.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000085873.2	Ttc39aos1	chr4	lncRNA	Ttc39a opposite strand RNA 1
novel_NIR_13059	chr4	109333458	109334077	-	109333458	109334072	A5SS	ENSMUST00000064167.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	3	3	3	3	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000028557.11	Rnf11	chr4	protein_coding	ring finger protein 11
novel_NIR_13060	chr4	109493552	109510136	-	109509843	109510136	3pMXE	ENSMUST00000131216.8	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000059027.15	9630013D21Rik	chr4	lncRNA	RIKEN cDNA 9630013D21 gene
novel_NIR_13061	chr4	109493552	109510136	-	109510022	109510136	3pMXE	ENSMUST00000127391.2	novel	0.00	0	42	0	42	n	0.00	0	24	0	24	n	0.00	0	8	0	8	n	0.00	0	27	0	27	n	0.00	0	41	0	41	n	0.20	2	8	2	8	y	0.00	0	26	0	26	n	0.00	0	13	0	13	n	0.00	0	35	0	35	n	0.00	0	40	0	40	n	0.00	0	48	0	48	n	0.00	0	28	0	28	n	ENSMUSG00000059027.15	9630013D21Rik	chr4	lncRNA	RIKEN cDNA 9630013D21 gene
novel_NIR_13062	chr4	109510308	109513598	-	109510308	109511223	5pMXE	ENSMUST00000127391.2	novel	0.04	2	44	2	44	n	0.14	6	36	6	36	n	0.00	0	12	0	12	n	0.14	5	32	5	32	n	0.00	0	45	0	45	n	0.00	0	16	0	16	n	0.08	3	34	3	34	n	0.17	3	15	3	15	y	0.03	1	34	1	34	n	0.03	2	64	2	64	n	0.02	1	45	1	45	n	0.10	5	47	5	47	n	ENSMUSG00000059027.15	9630013D21Rik	chr4	lncRNA	RIKEN cDNA 9630013D21 gene
novel_NIR_13063	chr4	109510308	109513598	-	109510308;109511308	109511223;109513598	ES	ENSMUST00000156790.8	novel	0.05	2	41.5	2	44;39	n	0.17	6	29.5	6	36;23	y	0.00	0	13.0	0	12;14	n	0.13	5	32.5	5	32;33	n	0.00	0	51.0	0	45;57	n	0.00	0	13.5	0	16;11	n	0.08	3	35.5	3	34;37	n	0.19	3	12.5	3	15;10	y	0.03	1	31.0	1	34;28	n	0.04	2	50.0	2	64;36	n	0.02	1	40.5	1	45;36	n	0.12	5	36.0	5	47;25	n	ENSMUSG00000059027.15	9630013D21Rik	chr4	lncRNA	RIKEN cDNA 9630013D21 gene
novel_NIR_13064	chr4	109510308;109513759	109513598;109514622	-	109510308;109511308	109511223;109514622	MXE	ENSMUST00000126635.2	novel	0.04	1.0	22.0	2;0	44;0	n	0.14	3.0	18.0	6;0	36;0	n	0.00	0.0	6.0	0;0	12;0	n	0.14	2.5	16.0	5;0	32;0	n	0.00	0.0	22.5	0;0	45;0	n	0.00	0.0	8.0	0;0	16;0	n	0.08	1.5	17.0	3;0	34;0	n	0.17	1.5	7.5	3;0	15;0	n	0.03	0.5	17.0	1;0	34;0	n	0.06	2.0	32.0	2;2	64;0	n	0.04	1.0	22.5	1;1	45;0	n	0.16	4.5	23.5	5;4	47;0	y	ENSMUSG00000059027.15	9630013D21Rik	chr4	lncRNA	RIKEN cDNA 9630013D21 gene
novel_NIR_13065	chr4	109510308;109513774	109513598;109514622	-	109510308;109511308	109511223;109514622	MXE	ENSMUST00000126635.2	novel	0.04	1.0	22.0	2;0	44;0	n	0.16	3.5	18.0	6;1	36;0	n	0.20	1.5	6.0	0;3	12;0	n	0.20	4.0	16.0	5;3	32;0	y	0.04	1.0	22.5	0;2	45;0	n	0.00	0.0	8.0	0;0	16;0	n	0.15	3.0	17.0	3;3	34;0	y	0.21	2.0	7.5	3;1	15;0	n	0.13	2.5	17.0	1;4	34;0	n	0.03	1.0	32.0	2;0	64;0	n	0.04	1.0	22.5	1;1	45;0	n	0.10	2.5	23.5	5;0	47;0	n	ENSMUSG00000059027.15	9630013D21Rik	chr4	lncRNA	RIKEN cDNA 9630013D21 gene
novel_NIR_13066	chr4	109510308;109513789	109513598;109514622	-	109510308;109511308	109511223;109514622	MXE	ENSMUST00000126635.2	novel	0.06	1.5	22.0	2;1	44;0	n	0.18	4.0	18.0	6;2	36;0	y	0.00	0.0	6.0	0;0	12;0	n	0.26	5.5	16.0	5;6	32;0	y	0.04	1.0	22.5	0;2	45;0	n	0.16	1.5	8.0	0;3	16;0	n	0.13	2.5	17.0	3;2	34;0	n	0.25	2.5	7.5	3;2	15;0	y	0.11	2.0	17.0	1;3	34;0	n	0.09	3.0	32.0	2;4	64;0	n	0.15	4.0	22.5	1;7	45;0	n	0.10	2.5	23.5	5;0	47;0	n	ENSMUSG00000059027.15	9630013D21Rik	chr4	lncRNA	RIKEN cDNA 9630013D21 gene
novel_NIR_13067	chr4	109510308;109513792	109513598;109514622	-	109510308;109511308	109511223;109514622	MXE	ENSMUST00000126635.2	novel	0.12	3.0	22.0	2;4	44;0	n	0.14	3.0	18.0	6;0	36;0	n	0.00	0.0	6.0	0;0	12;0	n	0.26	5.5	16.0	5;6	32;0	y	0.04	1.0	22.5	0;2	45;0	n	0.00	0.0	8.0	0;0	16;0	n	0.19	4.0	17.0	3;5	34;0	y	0.17	1.5	7.5	3;0	15;0	n	0.13	2.5	17.0	1;4	34;0	n	0.06	2.0	32.0	2;2	64;0	n	0.06	1.5	22.5	1;2	45;0	n	0.13	3.5	23.5	5;2	47;0	n	ENSMUSG00000059027.15	9630013D21Rik	chr4	lncRNA	RIKEN cDNA 9630013D21 gene
novel_NIR_13068	chr4	109513774	109514622	-	109511308	109514622	A3SS	ENSMUST00000126635.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	3	0	3	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	n	1.00	1	0	1	0	n	1.00	4	0	4	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000059027.15	9630013D21Rik	chr4	lncRNA	RIKEN cDNA 9630013D21 gene
novel_NIR_13069	chr4	109513789	109514622	-	109511308	109514622	A3SS	ENSMUST00000126635.2	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	n	-	-	-	-	-	-	1.00	6	0	6	0	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	n	1.00	2	0	2	0	n	1.00	3	0	3	0	n	1.00	4	0	4	0	n	1.00	7	0	7	0	n	-	-	-	-	-	-	ENSMUSG00000059027.15	9630013D21Rik	chr4	lncRNA	RIKEN cDNA 9630013D21 gene
novel_NIR_13070	chr4	109513792	109514622	-	109511308	109514622	A3SS	ENSMUST00000126635.2	novel	1.00	4	0	4	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	5	0	5	0	n	-	-	-	-	-	-	1.00	4	0	4	0	n	1.00	2	0	2	0	n	1.00	2	0	2	0	n	1.00	2	0	2	0	n	ENSMUSG00000059027.15	9630013D21Rik	chr4	lncRNA	RIKEN cDNA 9630013D21 gene
novel_NIR_13071	chr4	109522438	109522807	-	109522354	109522807	A3SS	ENSMUST00000097921.10	novel	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.08	1	11	1	11	n	0.00	0	11	0	11	n	-	-	-	-	-	-	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.33	5	10	5	10	y	0.00	0	11	0	11	n	0.00	0	10	0	10	n	ENSMUSG00000028551.15	Cdkn2c	chr4	protein_coding	cyclin dependent kinase inhibitor 2C
novel_NIR_13072	chr4	11068196	11070200	-	11062152	11070200	A3SS	ENSMUST00000124607.8	novel	0.15	4	22	4	22	y	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	18	0	18	n	0.00	0	18	0	18	n	0.00	0	7	0	7	n	0.07	2	25	2	25	n	0.00	0	5	0	5	n	0.15	4	22	4	22	y	0.06	2	29	2	29	n	0.08	2	24	2	24	n	0.00	0	22	0	22	n	ENSMUSG00000050323.15	Ndufaf6	chr4	protein_coding	NADH:ubiquinone oxidoreductase complex assembly factor 6
novel_NIR_13073	chr4	11164569	11165294	+	11164569	11165090	A3SS	ENSMUST00000029865.4	novel	0.00	0	36	0	36	n	0.14	4	24	4	24	n	0.10	19	165	19	165	n	0.00	0	43	0	43	n	0.07	4	50	4	50	n	0.15	10	58	10	58	y	0.13	5	34	5	34	n	0.08	3	36	3	36	n	0.00	0	36	0	36	n	0.07	6	76	6	76	n	0.06	2	30	2	30	n	0.12	8	57	8	57	n	ENSMUSG00000028211.12	Trp53inp1	chr4	protein_coding	transformation related protein 53 inducible nuclear protein 1
novel_NIR_13074	chr4	11203108	11204464	-	11199451	11204464	A3SS	ENSMUST00000044616.10	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000040738.11	Ints8	chr4	protein_coding	integrator complex subunit 8
novel_NIR_13075	chr4	11239431	11241581	-	11239462	11241581	A3SS	ENSMUST00000044616.10	novel	0.16	3	16	3	16	y	0.00	0	7	0	7	n	0.00	0	20	0	20	n	0.00	0	23	0	23	n	0.08	3	35	3	35	n	0.00	0	7	0	7	n	0.00	0	32	0	32	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	26	0	26	n	0.00	0	13	0	13	n	0.00	0	33	0	33	n	ENSMUSG00000040738.11	Ints8	chr4	protein_coding	integrator complex subunit 8
novel_NIR_13076	chr4	11273139	11277929	-	11273139;11276946	11276864;11277929	ES	ENSMUST00000139385.8	novel	0.00	0	7.5	0	8;7	n	0.27	2	5.5	2	4;7	y	0.00	0	11.5	0	6;17	n	0.00	0	13.0	0	15;11	n	0.00	0	15.0	0	16;14	n	0.00	0	7.5	0	10;5	n	0.00	0	6.5	0	8;5	n	0.00	0	11.0	0	9;13	n	0.00	0	11.0	0	16;6	n	0.00	0	14.5	0	13;16	n	0.00	0	5.5	0	6;5	n	0.00	0	9.5	0	11;8	n	ENSMUSG00000045205.17	Dpy19l4	chr4	protein_coding	dpy-19-like 4 (C. elegans)
novel_NIR_13077	chr4	11273139	11277929	-	11276946	11277929	3pMXE	ENSMUST00000128024.8	novel	0.00	0	7	0	7	n	0.22	2	7	2	7	y	0.00	0	17	0	17	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	ENSMUSG00000045205.17	Dpy19l4	chr4	protein_coding	dpy-19-like 4 (C. elegans)
novel_NIR_13078	chr4	11290465	11292554	-	11290289	11292554	A3SS	ENSMUST00000128024.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000045205.17	Dpy19l4	chr4	protein_coding	dpy-19-like 4 (C. elegans)
novel_NIR_13079	chr4	114826561	114841993	-	114826561	114827661	A5SS&ES	ENSMUST00000133066.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028719.9	Cmpk1	chr4	protein_coding	cytidine monophosphate (UMP-CMP) kinase 1
novel_NIR_13080	chr4	114826561	114841993	-	114826561	114828489	A5SS&ES	ENSMUST00000129317.2	novel	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.11	1	8	1	8	n	0.00	0	7	0	7	n	1.00	1	0	1	0	n	0.40	2	3	2	3	y	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	15	0	15	n	ENSMUSG00000028719.9	Cmpk1	chr4	protein_coding	cytidine monophosphate (UMP-CMP) kinase 1
novel_NIR_13081	chr4	114833782	114844163	-	114827699	114844163	A3SS	ENSMUST00000133066.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000028719.9	Cmpk1	chr4	protein_coding	cytidine monophosphate (UMP-CMP) kinase 1
novel_NIR_13082	chr4	114833782	114844163	-	114828555	114844163	A3SS	ENSMUST00000129317.2	novel	0.67	2	1	2	1	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.12	1	7	1	7	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	ENSMUSG00000028719.9	Cmpk1	chr4	protein_coding	cytidine monophosphate (UMP-CMP) kinase 1
novel_NIR_13083	chr4	114833782	114844163	-	114842158	114844163	3pMXE	ENSMUST00000131014.2	novel	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	ENSMUSG00000028719.9	Cmpk1	chr4	protein_coding	cytidine monophosphate (UMP-CMP) kinase 1
novel_NIR_13084	chr4	114945973	114946236	+	114945973	114946277	A3SS	ENSMUST00000177647.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028716.16	Pdzk1ip1	chr4	protein_coding	PDZK1 interacting protein 1
novel_NIR_13085	chr4	114945973	114946236	+	114946003	114946236	A5SS	ENSMUST00000106548.9	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028716.16	Pdzk1ip1	chr4	protein_coding	PDZK1 interacting protein 1
novel_NIR_13086	chr4	115458360	115459460	+	115458360	115460125	A3SS	ENSMUST00000129918.2	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	0.20	2	8	2	8	y	1.00	8	0	8	0	y	0.45	5	6	5	6	y	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.60	3	2	3	2	y	0.00	0	3	0	3	n	0.07	1	13	1	13	n	0.00	0	2	0	2	n	1.00	2	0	2	0	n	ENSMUSG00000063929.7	Cyp4a32	chr4	protein_coding	cytochrome P450, family 4, subfamily a, polypeptide 32
novel_NIR_13087	chr4	115458360	115463842	+	115458360	115460125	A3SS&ES	ENSMUST00000129918.2	novel	-	-	-	-	-	-	0.33	2	4	2	4	y	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.08	1	11	1	11	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.07	1	13	1	13	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000063929.7	Cyp4a32	chr4	protein_coding	cytochrome P450, family 4, subfamily a, polypeptide 32
novel_NIR_13088	chr4	115458360	115466824	+	115458360;115460169	115460125;115466824	ES	ENSMUST00000129918.2	novel	0.92	12	1.0	12	0;2	y	0.57	6	4.5	6	4;5	y	0.52	8	7.5	8	8;7	y	0.70	7	3.0	7	0;6	y	0.47	8	9.0	8	6;12	y	0.43	3	4.0	3	3;5	y	0.31	7	15.5	7	11;20	y	0.61	7	4.5	7	2;7	y	0.22	2	7.0	2	3;11	y	0.39	6	9.5	6	13;6	y	0.70	8	3.5	8	2;5	y	0.80	4	1.0	4	0;2	y	ENSMUSG00000063929.7	Cyp4a32	chr4	protein_coding	cytochrome P450, family 4, subfamily a, polypeptide 32
novel_NIR_13089	chr4	115459601	115463842	+	115459601;115460169	115460125;115463842	ES	ENSMUST00000084342.6	novel	0.14	3	18.0	3	23;13	n	0.25	7	21.5	7	19;24	y	0.10	5	45.0	5	47;43	n	0.10	4	34.5	4	37;32	n	0.12	9	67.0	9	75;59	n	0.00	0	14.5	0	19;10	n	0.20	9	35.0	9	46;24	y	0.21	8	30.0	8	37;23	y	0.03	1	29.5	1	35;24	n	0.18	8	37.5	8	47;28	y	0.13	4	26.5	4	32;21	n	0.04	1	22.0	1	30;14	n	ENSMUSG00000063929.7	Cyp4a32	chr4	protein_coding	cytochrome P450, family 4, subfamily a, polypeptide 32
novel_NIR_13090	chr4	115668395	115675964	+	115668395;115670511	115670358;115675964	ES	ENSMUST00000137401.3	novel	1.00	1	0.0	1	0;0	n	1.00	3	0.0	3	0;0	y	1.00	2	0.0	2	0;0	y	1.00	2	0.0	2	0;0	y	1.00	4	0.0	4	0;0	y	1.00	1	0.0	1	0;0	n	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	1.00	3	0.0	3	0;0	y	0.67	3	1.5	3	3;0	y	1.00	3	0.0	3	0;0	y	1.00	3	0.0	3	0;0	y	ENSMUSG00000028710.19	Atpaf1	chr4	protein_coding	ATP synthase mitochondrial F1 complex assembly factor 1
novel_NIR_13091	chr4	115688886	115689542	+	115688886	115690830	A3SS	ENSMUST00000030477.4	novel	0.08	1	11	1	11	n	0.06	1	16	1	16	n	0.00	0	33	0	33	n	0.00	0	29	0	29	n	0.03	1	35	1	35	n	0.12	2	15	2	15	n	0.18	6	28	6	28	y	0.03	1	34	1	34	n	0.06	1	16	1	16	n	0.02	1	41	1	41	n	0.08	1	11	1	11	n	0.00	0	23	0	23	n	ENSMUSG00000028709.4	Mob3c	chr4	protein_coding	MOB kinase activator 3C
novel_NIR_13092	chr4	115705555	115714229	+	115712204	115714229	A5SS&ES	ENSMUST00000144235.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.67	2	1	2	1	y	0.40	2	3	2	3	y	ENSMUSG00000028708.17	Mknk1	chr4	protein_coding	MAP kinase-interacting serine/threonine kinase 1
novel_NIR_13093	chr4	115709172	115714229	+	115712204	115714229	A5SS&ES	ENSMUST00000144235.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000028708.17	Mknk1	chr4	protein_coding	MAP kinase-interacting serine/threonine kinase 1
novel_NIR_13094	chr4	115897426	115900301	-	115897426	115898075	A5SS&ES	ENSMUST00000030474.12	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028706.15	Nsun4	chr4	protein_coding	NOL1/NOP2/Sun domain family, member 4
novel_NIR_13095	chr4	115897426	115900301	-	115897426	115900298	A5SS	ENSMUST00000136655.3	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	ENSMUSG00000028706.15	Nsun4	chr4	protein_coding	NOL1/NOP2/Sun domain family, member 4
novel_NIR_13096	chr4	11612438	11615443	+	11612438;11612818	11612618;11615443	ES	ENSMUST00000070755.13	novel	0.67	2	1.0	2	0;2	y	0.00	0	2.5	0	1;4	n	0.00	0	1.0	0	0;2	n	-	-	-	-	-	-	0.00	0	3.5	0	1;6	n	0.00	0	1.0	0	1;1	n	0.00	0	2.0	0	3;1	n	-	-	-	-	-	-	0.00	0	0.5	0	0;1	n	0.00	0	1.0	0	2;0	n	0.00	0	2.0	0	4;0	n	0.00	0	1.0	0	0;2	n	ENSMUSG00000078773.12	Rad54b	chr4	protein_coding	RAD54 homolog B (S. cerevisiae)
novel_NIR_13097	chr4	116231411	116248800	-	116210261	116248800	A3SS	ENSMUST00000106484.8	novel	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	34	0	34	n	0.18	2	9	2	9	y	0.00	0	17	0	17	n	0.00	0	14	0	14	n	0.00	0	22	0	22	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	17	0	17	n	ENSMUSG00000003810.14	Mast2	chr4	protein_coding	microtubule associated serine/threonine kinase 2
novel_NIR_13098	chr4	116231411	116248800	-	116225981	116248800	A3SS	ENSMUST00000134460.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000003810.14	Mast2	chr4	protein_coding	microtubule associated serine/threonine kinase 2
novel_NIR_13099	chr4	116395117	116426361	+	116415346	116426361	5pMXE	ENSMUST00000106475.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034042.17	Gpbp1l1	chr4	protein_coding	GC-rich promoter binding protein 1-like 1
novel_NIR_13100	chr4	116412100	116414108	-	116412100	116413070	5pMXE	ENSMUST00000106478.9	novel	0.46	11	13	11	13	y	0.25	4	12	4	12	y	0.17	7	33	7	33	y	0.15	4	22	4	22	y	0.25	9	27	9	27	y	0.13	3	20	3	20	n	0.31	8	18	8	18	y	0.00	0	7	0	7	n	0.28	5	13	5	13	y	0.28	5	13	5	13	y	0.27	7	19	7	19	y	0.35	6	11	6	11	y	ENSMUSG00000055900.15	Tmem69	chr4	protein_coding	transmembrane protein 69
novel_NIR_13101	chr4	116415486	116426361	+	116415346	116426361	A5SS	ENSMUST00000106475.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034042.17	Gpbp1l1	chr4	protein_coding	GC-rich promoter binding protein 1-like 1
novel_NIR_13102	chr4	116450145	116454609	-	116450145	116453039	A5SS	ENSMUST00000142815.2	novel	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000085408.2	C530005A16Rik	chr4	lncRNA	RIKEN cDNA C530005A16 gene
novel_NIR_13103	chr4	116502790	116515374	-	116502790	116506561	5pMXE	ENSMUST00000128059.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	6	0	6	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	ENSMUSG00000028692.15	Akr1a1	chr4	protein_coding	aldo-keto reductase family 1, member A1 (aldehyde reductase)
novel_NIR_13104	chr4	116502790	116516725	-	116502790	116506561	5pMXE	ENSMUST00000128059.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	ENSMUSG00000028692.15	Akr1a1	chr4	protein_coding	aldo-keto reductase family 1, member A1 (aldehyde reductase)
novel_NIR_13105	chr4	116532300	116544604	+	116543333	116544604	5pMXE	ENSMUST00000106470.8	novel	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.44	4	5	4	5	y	0.00	0	3	0	3	n	0.17	1	5	1	5	n	ENSMUSG00000028691.13	Prdx1	chr4	protein_coding	peroxiredoxin 1
novel_NIR_13106	chr4	116532300	116544604	+	116543337	116544604	5pMXE	ENSMUST00000129315.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000028691.13	Prdx1	chr4	protein_coding	peroxiredoxin 1
novel_NIR_13107	chr4	116532322	116544604	+	116543333	116544604	5pMXE	ENSMUST00000106470.8	novel	0.43	3	4	3	4	y	0.62	5	3	5	3	y	0.00	0	4	0	4	n	0.50	3	3	3	3	y	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.12	1	7	1	7	n	0.55	6	5	6	5	y	0.40	2	3	2	3	y	0.58	7	5	7	5	y	ENSMUSG00000028691.13	Prdx1	chr4	protein_coding	peroxiredoxin 1
novel_NIR_13108	chr4	116532322	116544604	+	116543337	116544604	5pMXE	ENSMUST00000129315.8	novel	1.00	3	0	3	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	6	0	6	0	y	1.00	2	0	2	0	y	1.00	7	0	7	0	y	ENSMUSG00000028691.13	Prdx1	chr4	protein_coding	peroxiredoxin 1
novel_NIR_13109	chr4	116542857	116544611	+	116542857	116544575	A3SS	ENSMUST00000151129.8	novel	0.93	77	6	77	6	y	0.98	84	2	84	2	y	0.00	0	1	0	1	n	0.94	96	6	96	6	y	0.97	96	3	96	3	y	1.00	46	0	46	0	y	0.69	9	4	9	4	y	0.98	64	1	64	1	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.96	55	2	55	2	y	0.94	91	6	91	6	y	ENSMUSG00000028691.13	Prdx1	chr4	protein_coding	peroxiredoxin 1
novel_NIR_13110	chr4	116567481	116571213	+	116567481	116568483	A3SS&ES	ENSMUST00000155391.8	novel	1.00	3	0	3	0	y	0.38	5	8	5	8	y	1.00	8	0	8	0	y	-	-	-	-	-	-	0.38	5	8	5	8	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.78	7	2	7	2	y	0.53	8	7	8	7	y	0.20	2	8	2	8	y	0.40	2	3	2	3	y	ENSMUSG00000028689.15	Ccdc163	chr4	protein_coding	coiled-coil domain containing 163
novel_NIR_13111	chr4	116567481	116571213	+	116567481	116568508	A3SS&ES	ENSMUST00000030452.13	novel	0.27	3	8	3	8	y	0.42	5	7	5	7	y	0.53	8	7	8	7	y	0.00	0	5	0	5	n	0.25	5	15	5	15	y	0.00	0	6	0	6	n	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.58	7	5	7	5	y	0.35	8	15	8	15	y	0.25	2	6	2	6	y	0.18	2	9	2	9	y	ENSMUSG00000028689.15	Ccdc163	chr4	protein_coding	coiled-coil domain containing 163
novel_NIR_13112	chr4	116567481	116571213	+	116570023	116571213	5pMXE	ENSMUST00000134192.2	novel	0.75	3	1	3	1	y	0.71	5	2	5	2	y	0.80	8	2	8	2	y	0.00	0	1	0	1	n	0.42	5	7	5	7	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	7	0	7	0	y	1.00	8	0	8	0	y	0.40	2	3	2	3	y	0.67	2	1	2	1	y	ENSMUSG00000028689.15	Ccdc163	chr4	protein_coding	coiled-coil domain containing 163
novel_NIR_13113	chr4	116567481	116571285	+	116567481	116568508	A3SS&ES	ENSMUST00000030452.13	novel	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.12	1	7	1	7	n	0.00	0	5	0	5	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	15	0	15	n	0.14	1	6	1	6	n	0.25	3	9	3	9	y	ENSMUSG00000028689.15	Ccdc163	chr4	protein_coding	coiled-coil domain containing 163
novel_NIR_13114	chr4	116569636	116571213	+	116570023	116571213	5pMXE	ENSMUST00000134192.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.12	1	7	1	7	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000028689.15	Ccdc163	chr4	protein_coding	coiled-coil domain containing 163
novel_NIR_13115	chr4	116569636	116571285	+	116569636	116569920	A3SS&ES	ENSMUST00000030452.13	novel	0.00	0	23	0	23	n	0.00	0	9	0	9	n	0.40	2	3	2	3	y	0.07	1	13	1	13	n	0.00	0	22	0	22	n	-	-	-	-	-	-	0.00	0	24	0	24	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	ENSMUSG00000028689.15	Ccdc163	chr4	protein_coding	coiled-coil domain containing 163
novel_NIR_13116	chr4	116569636	116571285	+	116569636;116570023	116569920;116571285	ES	ENSMUST00000106462.9	novel	0.00	0	14.5	0	23;6	n	0.00	0	8.0	0	9;7	n	0.27	2	5.5	2	3;8	y	0.09	1	10.5	1	13;8	n	0.00	0	14.5	0	22;7	n	0.00	0	1.0	0	0;2	n	0.00	0	17.0	0	24;10	n	0.00	0	7.0	0	9;5	n	0.00	0	9.5	0	10;9	n	0.00	0	10.5	0	13;8	n	0.00	0	8.0	0	11;5	n	0.00	0	13.0	0	16;10	n	ENSMUSG00000028689.15	Ccdc163	chr4	protein_coding	coiled-coil domain containing 163
novel_NIR_13117	chr4	116662428	116662683	-	116662597	116662683	A3SS	ENSMUST00000145468.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	2	1	2	1	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	ENSMUSG00000028688.14	Toe1	chr4	protein_coding	target of EGR1, member 1 (nuclear)
novel_NIR_13118	chr4	116838129	116839104	+	116838129	116841880	A3SS	ENSMUST00000044823.4	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.43	3	4	3	4	y	0.00	0	2	0	2	n	0.00	0	6	0	6	n	ENSMUSG00000033948.4	Zswim5	chr4	protein_coding	zinc finger SWIM-type containing 5
novel_NIR_13119	chr4	116877239	116879352	+	116876673	116879352	A5SS	ENSMUST00000106448.9	novel	0.00	0	26	0	26	n	0.00	0	10	0	10	n	0.00	0	26	0	26	n	0.00	0	11	0	11	n	0.17	3	15	3	15	y	0.05	1	20	1	20	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.09	1	10	1	10	n	0.00	0	17	0	17	n	0.00	0	17	0	17	n	ENSMUSG00000028683.15	Eif2b3	chr4	protein_coding	eukaryotic translation initiation factor 2B, subunit 3
novel_NIR_13120	chr4	117109331	117122995	+	117109331	117109634	A3SS&ES	ENSMUST00000154449.2	novel	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.80	4	1	4	1	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	7	0	7	0	y	1.00	3	0	3	0	y	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	ENSMUSG00000048772.16	Tmem53	chr4	protein_coding	transmembrane protein 53
novel_NIR_13121	chr4	117109331	117122995	+	117109331	117109825	A3SS&ES	ENSMUST00000125943.8	novel	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	4	4	4	4	y	1.00	2	0	2	0	y	0.40	2	3	2	3	y	0.64	7	4	7	4	y	1.00	3	0	3	0	y	0.28	5	13	5	13	y	0.75	3	1	3	1	y	0.50	3	3	3	3	y	ENSMUSG00000048772.16	Tmem53	chr4	protein_coding	transmembrane protein 53
novel_NIR_13122	chr4	117109352	117122995	+	117109352	117123057	A3SS	ENSMUST00000106434.8	novel	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.10	1	9	1	9	n	0.00	0	8	0	8	n	0.14	1	6	1	6	n	0.00	0	12	0	12	n	0.33	4	8	4	8	y	0.11	1	8	1	8	n	ENSMUSG00000048772.16	Tmem53	chr4	protein_coding	transmembrane protein 53
novel_NIR_13123	chr4	117134120	117134568	-	117134061	117134568	A3SS	ENSMUST00000151829.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028677.20	Rnf220	chr4	protein_coding	ring finger protein 220
novel_NIR_13124	chr4	117143169	117145567	-	117143169	117145560	A5SS	ENSMUST00000154974.8	novel	0.75	3	1	3	1	y	-	-	-	-	-	-	0.36	4	7	4	7	y	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.67	2	1	2	1	y	0.00	0	6	0	6	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028677.20	Rnf220	chr4	protein_coding	ring finger protein 220
novel_NIR_13125	chr4	117143169	117145567	-	117143169	117145720	A5SS	ENSMUST00000102690.9	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028677.20	Rnf220	chr4	protein_coding	ring finger protein 220
novel_NIR_13126	chr4	117410240	117421824	+	117410240	117421818	A3SS	ENSMUST00000037127.15	novel	0.29	12	30	12	30	y	0.26	7	20	7	20	y	0.33	16	33	16	33	y	0.28	13	34	13	34	y	0.26	16	45	16	45	y	0.26	8	23	8	23	y	0.31	16	35	16	35	y	0.23	7	23	7	23	y	0.19	6	25	6	25	y	0.36	17	30	17	30	y	0.18	6	27	6	27	y	0.16	9	47	9	47	y	ENSMUSG00000033423.17	Eri3	chr4	protein_coding	exoribonuclease 3
novel_NIR_13127	chr4	117478757	117506504	+	117494906	117506504	5pMXE	ENSMUST00000134379.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	8	0	8	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	ENSMUSG00000033423.17	Eri3	chr4	protein_coding	exoribonuclease 3
novel_NIR_13128	chr4	117743835	117744371	-	117743835	117743940	A5SS	ENSMUST00000132073.2	novel	0.50	2	2	2	2	y	0.40	6	9	6	9	y	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.15	2	11	2	11	y	0.00	0	5	0	5	n	0.21	3	11	3	11	y	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.38	5	8	5	8	y	0.67	2	1	2	1	y	0.00	0	5	0	5	n	ENSMUSG00000033379.14	Atp6v0b	chr4	protein_coding	ATPase, H+ transporting, lysosomal V0 subunit B
novel_NIR_13129	chr4	117743835	117744377	-	117743835	117743940	A5SS	ENSMUST00000132073.2	novel	0.78	7	2	7	2	y	0.25	3	9	3	9	y	0.47	8	9	8	9	y	0.57	4	3	4	3	y	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.54	13	11	13	11	y	0.33	2	4	2	4	y	0.38	5	8	5	8	y	0.53	9	8	9	8	y	0.50	1	1	1	1	n	0.00	0	5	0	5	n	ENSMUSG00000033379.14	Atp6v0b	chr4	protein_coding	ATPase, H+ transporting, lysosomal V0 subunit B
novel_NIR_13130	chr4	117743891	117744377	-	117743891	117744367	A5SS	ENSMUST00000136596.2	novel	0.00	0	6	0	6	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	1.00	3	0	3	0	y	ENSMUSG00000033379.14	Atp6v0b	chr4	protein_coding	ATPase, H+ transporting, lysosomal V0 subunit B
novel_NIR_13131	chr4	117797697	117798101	-	117797697	117814632	A5SS	ENSMUST00000138274.8	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.00	0	8	0	8	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	ENSMUSG00000028538.13	St3gal3	chr4	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 3
novel_NIR_13132	chr4	117799028	117815625	-	117814715	117815625	A3SS&ES	ENSMUST00000138274.8	novel	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.20	2	8	2	8	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	ENSMUSG00000028538.13	St3gal3	chr4	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 3
novel_NIR_13133	chr4	117889079	117890704	-	117889079	117964746	A5SS	ENSMUST00000097912.8	novel	0.00	0	14	0	14	n	0.31	4	9	4	9	y	0.44	4	5	4	5	y	0.27	6	16	6	16	y	0.10	2	19	2	19	n	0.40	4	6	4	6	y	0.16	3	16	3	16	y	0.08	1	11	1	11	n	0.40	6	9	6	9	y	0.37	7	12	7	12	y	0.28	5	13	5	13	y	0.14	3	19	3	19	n	ENSMUSG00000028538.13	St3gal3	chr4	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 3
novel_NIR_13134	chr4	117889079;117953505	117953440;117964746	-	117889079	117964746	cassetteExon	ENSMUST00000097912.8	novel	0.36	8.0	14	6;10	14	y	0.22	2.5	9	0;5	9	n	0.57	6.5	5	6;7	5	y	0.20	4.0	16	1;7	16	n	0.25	6.5	19	3;10	19	y	0.48	5.5	6	4;7	6	y	0.22	4.5	16	0;9	16	n	0.33	5.5	11	2;9	11	y	0.22	2.5	9	1;4	9	n	0.40	8.0	12	0;16	12	n	0.19	3.0	13	2;4	13	y	0.14	3.0	19	1;5	19	n	ENSMUSG00000028538.13	St3gal3	chr4	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 3
novel_NIR_13135	chr4	117953505	117964746	-	117889079	117964746	A3SS	ENSMUST00000097912.8	novel	0.42	10	14	10	14	n	0.36	5	9	5	9	y	0.58	7	5	7	5	n	0.30	7	16	7	16	n	0.34	10	19	10	19	n	0.54	7	6	7	6	n	0.36	9	16	9	16	y	0.45	9	11	9	11	n	0.31	4	9	4	9	n	0.57	16	12	16	12	y	0.24	4	13	4	13	n	0.21	5	19	5	19	n	ENSMUSG00000028538.13	St3gal3	chr4	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 3
novel_NIR_13136	chr4	117964890	117991601	-	117964890	117991587	A5SS	ENSMUST00000030263.9	novel	0.25	25	75	25	75	y	0.20	21	84	21	84	y	0.18	25	112	25	112	y	0.15	18	100	18	100	y	0.22	36	129	36	129	y	0.19	15	62	15	62	y	0.26	39	111	39	111	y	0.28	27	69	27	69	y	0.24	27	84	27	84	y	0.21	28	105	28	105	y	0.23	21	71	21	71	y	0.27	46	123	46	123	y	ENSMUSG00000028538.13	St3gal3	chr4	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 3
novel_NIR_13137	chr4	117964890	117991601	-	117964890	117991931	A5SS	ENSMUST00000106410.8	novel	0.48	25	27	25	27	y	0.43	21	28	21	28	y	0.45	25	31	25	31	y	0.36	18	32	18	32	y	0.49	36	37	36	37	y	0.35	15	28	15	28	y	0.57	39	29	39	29	y	0.47	27	30	27	30	y	0.44	27	35	27	35	y	0.43	28	37	28	37	y	0.51	21	20	21	20	y	0.48	46	49	46	49	y	ENSMUSG00000028538.13	St3gal3	chr4	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 3
novel_NIR_13138	chr4	118034773	118036799	-	118034760	118036799	A3SS	ENSMUST00000097911.9	novel	1.00	6	0	6	0	y	1.00	2	0	2	0	y	0.95	19	1	19	1	y	1.00	7	0	7	0	y	1.00	14	0	14	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	11	0	11	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	7	0	7	0	y	ENSMUSG00000033326.16	Kdm4a	chr4	protein_coding	lysine (K)-specific demethylase 4A
novel_NIR_13139	chr4	118034773	118036799	-	118034773	118037090	A5SS	ENSMUST00000106406.9	novel	0.33	6	12	6	12	y	0.29	2	5	2	5	y	0.35	19	35	19	35	y	0.28	7	18	7	18	y	0.42	14	19	14	19	y	0.12	2	15	2	15	n	0.10	2	19	2	19	n	0.42	11	15	11	15	y	0.33	2	4	2	4	y	0.00	0	15	0	15	n	0.14	1	6	1	6	n	0.21	7	26	7	26	y	ENSMUSG00000033326.16	Kdm4a	chr4	protein_coding	lysine (K)-specific demethylase 4A
novel_NIR_13140	chr4	118083768	118084395	-	118083768	118085016	A5SS	ENSMUST00000150096.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.60	3	2	3	2	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000033295.15	Ptprf	chr4	protein_coding	protein tyrosine phosphatase, receptor type, F
novel_NIR_13141	chr4	118215041	118218813	+	118217428	118218813	5pMXE	ENSMUST00000106393.8	novel	0.08	8	96	8	96	n	0.15	15	83	15	83	y	0.05	2	38	2	38	n	0.08	7	84	7	84	n	0.03	3	98	3	98	n	0.00	0	26	0	26	n	0.08	12	145	12	145	n	0.06	2	34	2	34	n	0.05	5	93	5	93	n	0.09	18	181	18	181	n	0.02	3	118	3	118	n	0.10	11	96	11	96	n	ENSMUSG00000006395.17	Hyi	chr4	polymorphic_pseudogene	hydroxypyruvate isomerase (putative)
novel_NIR_13142	chr4	118217406	118218813	+	118217586	118218813	A5SS&ES	ENSMUST00000194248.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	0.00	0	1	0	1	n	ENSMUSG00000006395.17	Hyi	chr4	polymorphic_pseudogene	hydroxypyruvate isomerase (putative)
novel_NIR_13143	chr4	118217430	118218813	+	118217586	118218813	A5SS&ES	ENSMUST00000194248.2	novel	0.71	5	2	5	2	y	1.00	7	0	7	0	y	1.00	1	0	1	0	n	0.93	13	1	13	1	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	5	0	5	0	y	1.00	8	0	8	0	y	1.00	15	0	15	0	y	0.88	7	1	7	1	y	ENSMUSG00000006395.17	Hyi	chr4	polymorphic_pseudogene	hydroxypyruvate isomerase (putative)
novel_NIR_13144	chr4	118217713	118218813	+	118217586	118218813	A5SS	ENSMUST00000194248.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000006395.17	Hyi	chr4	polymorphic_pseudogene	hydroxypyruvate isomerase (putative)
novel_NIR_13145	chr4	118217928	118218813	+	118217586	118218813	A5SS	ENSMUST00000194248.2	novel	0.60	3	2	3	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	ENSMUSG00000006395.17	Hyi	chr4	polymorphic_pseudogene	hydroxypyruvate isomerase (putative)
novel_NIR_13146	chr4	118218456	118218813	+	118217586	118218813	A5SS	ENSMUST00000194248.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000006395.17	Hyi	chr4	polymorphic_pseudogene	hydroxypyruvate isomerase (putative)
novel_NIR_13147	chr4	118221879	118222037	-	118221915	118222037	A3SS	ENSMUST00000075406.12	novel	0.00	0	16	0	16	n	0.00	0	22	0	22	n	0.00	0	32	0	32	n	0.17	2	10	2	10	y	0.00	0	34	0	34	n	0.00	0	19	0	19	n	0.00	0	37	0	37	n	0.00	0	13	0	13	n	0.00	0	25	0	25	n	0.00	0	15	0	15	n	0.00	0	24	0	24	n	0.00	0	31	0	31	n	ENSMUSG00000033253.19	Szt2	chr4	protein_coding	SZT2 subunit of KICSTOR complex
novel_NIR_13148	chr4	118230728	118230941	-	118230752	118230941	A3SS	ENSMUST00000075406.12	novel	0.25	2	6	2	6	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	ENSMUSG00000033253.19	Szt2	chr4	protein_coding	SZT2 subunit of KICSTOR complex
novel_NIR_13149	chr4	118230752	118230865	-	118230752	118230941	A5SS	ENSMUST00000075406.12	novel	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.00	0	12	0	12	n	0.29	2	5	2	5	y	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.07	1	14	1	14	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	ENSMUSG00000033253.19	Szt2	chr4	protein_coding	SZT2 subunit of KICSTOR complex
novel_NIR_13150	chr4	118245841	118246120	-	118245911	118246120	A3SS	ENSMUST00000075406.12	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.11	1	8	1	8	n	0.50	2	2	2	2	y	0.50	3	3	3	3	y	0.33	1	2	1	2	n	1.00	1	0	1	0	n	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.29	2	5	2	5	y	0.14	1	6	1	6	n	0.33	2	4	2	4	y	ENSMUSG00000033253.19	Szt2	chr4	protein_coding	SZT2 subunit of KICSTOR complex
novel_NIR_13151	chr4	118335659	118336059	-	118335785	118336059	A3SS	ENSMUST00000184261.8	novel	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.00	0	28	0	28	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.00	0	20	0	20	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	18	0	18	n	0.00	0	6	0	6	n	0.00	0	19	0	19	n	ENSMUSG00000033191.15	Tie1	chr4	protein_coding	tyrosine kinase with immunoglobulin-like and EGF-like domains 1
novel_NIR_13152	chr4	118399880	118400553	-	118399880	118400326	5pMXE	ENSMUST00000154025.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	4	0	4	0	y	ENSMUSG00000050854.10	Tmem125	chr4	protein_coding	transmembrane protein 125
novel_NIR_13153	chr4	118399880	118400553	-	118399957	118400553	A3SS	ENSMUST00000060214.10	novel	0.12	2	15	2	15	n	0.00	0	13	0	13	n	0.08	4	44	4	44	n	0.00	0	18	0	18	n	0.07	2	27	2	27	n	0.03	1	29	1	29	n	0.21	6	22	6	22	y	0.00	0	25	0	25	n	0.00	0	4	0	4	n	0.00	0	16	0	16	n	0.17	3	15	3	15	y	0.13	4	26	4	26	n	ENSMUSG00000050854.10	Tmem125	chr4	protein_coding	transmembrane protein 125
novel_NIR_13154	chr4	119030672	119030860	-	119028239	119030860	A3SS	ENSMUST00000179290.8	novel	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.17	1	5	1	5	n	0.33	1	2	1	2	n	0.00	0	6	0	6	n	0.12	1	7	1	7	n	0.00	0	9	0	9	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.11	1	8	1	8	n	0.25	2	6	2	6	y	0.00	0	6	0	6	n	ENSMUSG00000045268.14	Zfp691	chr4	protein_coding	zinc finger protein 691
novel_NIR_13155	chr4	119030958	119031335	-	119028239	119031335	A3SS	ENSMUST00000106355.5	novel	0.11	1	8	1	8	n	0.09	1	10	1	10	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.20	2	8	2	8	y	0.12	1	7	1	7	n	0.38	3	5	3	5	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	ENSMUSG00000045268.14	Zfp691	chr4	protein_coding	zinc finger protein 691
novel_NIR_13156	chr4	119053218	119054738	+	119053218	119055956	A3SS	ENSMUST00000106345.3	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000028643.12	Svbp	chr4	protein_coding	small vasohibin binding protein
novel_NIR_13157	chr4	119053218	119054738	+	119053218	119058111	A3SS	ENSMUST00000210595.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028643.12	Svbp	chr4	protein_coding	small vasohibin binding protein
novel_NIR_13158	chr4	119089666	119089822	-	119089666	119089833	A5SS	ENSMUST00000144309.2	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.44	4	5	4	5	y	0.67	2	1	2	1	y	1.00	6	0	6	0	y	0.20	1	4	1	4	n	0.40	2	3	2	3	y	0.60	3	2	3	2	y	0.50	1	1	1	1	n	1.00	5	0	5	0	y	1.00	5	0	5	0	y	1.00	1	0	1	0	n	ENSMUSG00000078584.10	AU022252	chr4	protein_coding	expressed sequence AU022252
novel_NIR_13159	chr4	119104403	119104646	+	119104403	119105088	A3SS	ENSMUST00000142361.8	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028641.17	P3h1	chr4	protein_coding	prolyl 3-hydroxylase 1
novel_NIR_13160	chr4	119207071	119207404	-	119207071	119210267	A5SS	ENSMUST00000238759.2	novel	0.00	0	7	0	7	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.15	2	11	2	11	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	ENSMUSG00000028637.17	Ccdc30	chr4	protein_coding	coiled-coil domain containing 30
novel_NIR_13161	chr4	119390697	119390938	-	119390694	119390938	A3SS	ENSMUST00000137671.8	novel	1.00	1	0	1	0	n	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.29	2	5	2	5	y	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.33	2	4	2	4	y	ENSMUSG00000087385.9	Frg2f1	chr4	protein_coding	FSHD region gene 2 family member 1
novel_NIR_13162	chr4	119390697	119390938	-	119390746	119390938	A3SS	ENSMUST00000079611.13	novel	0.14	1	6	1	6	n	0.12	1	7	1	7	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.22	2	7	2	7	y	0.00	0	2	0	2	n	0.17	2	10	2	10	y	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.13	2	13	2	13	n	ENSMUSG00000087385.9	Frg2f1	chr4	protein_coding	FSHD region gene 2 family member 1
novel_NIR_13163	chr4	119391006	119396207	-	119391006	119392271	5pMXE	ENSMUST00000149305.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	ENSMUSG00000087385.9	Frg2f1	chr4	protein_coding	FSHD region gene 2 family member 1
novel_NIR_13164	chr4	119391006	119396207	-	119391006	119395805	5pMXE	ENSMUST00000079611.13	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	ENSMUSG00000087385.9	Frg2f1	chr4	protein_coding	FSHD region gene 2 family member 1
novel_NIR_13165	chr4	119391006	119396207	-	119391006	119396409	A5SS	ENSMUST00000177165.2	novel	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.15	2	11	2	11	y	0.33	1	2	1	2	n	0.06	1	16	1	16	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.18	3	14	3	14	y	0.10	1	9	1	9	n	ENSMUSG00000087385.9	Frg2f1	chr4	protein_coding	FSHD region gene 2 family member 1
novel_NIR_13166	chr4	119591059	119729234	+	119591059;119671987	119671875;119729234	ES	ENSMUST00000141605.8	novel	0.00	0	0.5	0	0;1	n	-	-	-	-	-	-	0.00	0	1.5	0	3;0	n	-	-	-	-	-	-	0.80	2	0.5	2	1;0	y	1.00	1	0.0	1	0;0	n	0.50	1	1.0	1	0;2	n	0.00	0	0.5	0	0;1	n	0.00	0	0.5	0	0;1	n	-	-	-	-	-	-	0.00	0	1.0	0	0;2	n	0.00	0	2.0	0	0;4	n	ENSMUSG00000028634.18	Hivep3	chr4	protein_coding	human immunodeficiency virus type I enhancer binding protein 3
novel_NIR_13167	chr4	119591059	119729234	+	119671987	119729234	5pMXE	ENSMUST00000136547.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000028634.18	Hivep3	chr4	protein_coding	human immunodeficiency virus type I enhancer binding protein 3
novel_NIR_13168	chr4	11966683	11980142	+	11966683	11993865	A3SS	ENSMUST00000154194.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000085614.2	1700123M08Rik	chr4	lncRNA	RIKEN cDNA 1700123M08 gene
novel_NIR_13169	chr4	120374263	120379652	+	120374274	120379652	A5SS	ENSMUST00000000087.13	novel	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.00	0	16	0	16	n	0.17	2	10	2	10	y	0.20	3	12	3	12	y	0.10	1	9	1	9	n	0.00	0	29	0	29	n	0.00	0	13	0	13	n	0.00	0	18	0	18	n	0.00	0	19	0	19	n	0.00	0	10	0	10	n	0.10	2	18	2	18	n	ENSMUSG00000000085.17	Scmh1	chr4	protein_coding	sex comb on midleg homolog 1
novel_NIR_13170	chr4	120374263	120379652	+	120374903	120379652	5pMXE	ENSMUST00000136801.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000000085.17	Scmh1	chr4	protein_coding	sex comb on midleg homolog 1
novel_NIR_13171	chr4	120402258	120402405	-	120402258	120404503	A5SS	ENSMUST00000030381.8	novel	0.00	0	7	0	7	n	0.00	0	16	0	16	n	0.00	0	49	0	49	n	0.00	0	13	0	13	n	0.10	2	19	2	19	n	0.00	0	20	0	20	n	0.06	1	17	1	17	n	0.00	0	10	0	10	n	0.00	0	18	0	18	n	0.00	0	14	0	14	n	0.00	0	24	0	24	n	0.17	2	10	2	10	y	ENSMUSG00000028633.8	Ctps	chr4	protein_coding	cytidine 5'-triphosphate synthase
novel_NIR_13172	chr4	120424624	120426273	-	120424624	120427348	A5SS	ENSMUST00000030381.8	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.16	4	21	4	21	y	0.00	0	1	0	1	n	0.11	1	8	1	8	n	0.56	5	4	5	4	y	0.36	4	7	4	7	y	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000028633.8	Ctps	chr4	protein_coding	cytidine 5'-triphosphate synthase
novel_NIR_13173	chr4	120622569	120625928	-	120622569	120625290	5pMXE	ENSMUST00000148081.2	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	ENSMUSG00000032897.18	Nfyc	chr4	protein_coding	nuclear transcription factor-Y gamma
novel_NIR_13174	chr4	12063154	12063674	-	12063158	12063674	A3SS	ENSMUST00000050686.10	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.22	2	7	2	7	y	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000049488.15	Tmem67	chr4	protein_coding	transmembrane protein 67
novel_NIR_13175	chr4	120647686	120682084	-	120647686	120672659	5pMXE	ENSMUST00000120779.8	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.75	6	2	6	2	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.83	5	1	5	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.71	5	2	5	2	y	0.75	3	1	3	1	y	0.40	2	3	2	3	y	ENSMUSG00000032897.18	Nfyc	chr4	protein_coding	nuclear transcription factor-Y gamma
novel_NIR_13176	chr4	120647686	120682084	-	120647686	120682727	A5SS	ENSMUST00000043429.12	novel	0.10	4	36	4	36	n	0.00	0	26	0	26	n	0.03	1	33	1	33	n	0.18	6	28	6	28	y	0.02	1	46	1	46	n	0.00	0	24	0	24	n	0.12	5	35	5	35	n	0.09	1	10	1	10	n	0.00	0	17	0	17	n	0.12	5	38	5	38	n	0.12	3	21	3	21	n	0.06	2	32	2	32	n	ENSMUSG00000032897.18	Nfyc	chr4	protein_coding	nuclear transcription factor-Y gamma
novel_NIR_13177	chr4	120647686	120682084	-	120647686	120688638	A5SS	ENSMUST00000118902.8	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	6	0	6	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	ENSMUSG00000032897.18	Nfyc	chr4	protein_coding	nuclear transcription factor-Y gamma
novel_NIR_13178	chr4	120800201	120804486	-	120792390	120804486	A3SS	ENSMUST00000106280.8	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	ENSMUSG00000064141.15	Zfp69	chr4	protein_coding	zinc finger protein 69
novel_NIR_13179	chr4	121028017;121028683	121028595;121039803	-	121028017	121039803	cassetteExon	ENSMUST00000168615.8	novel	0.09	0.5	5	0;1	5	n	0.11	0.5	4	1;0	4	n	0.17	7.5	37	10;5	37	y	0.06	0.5	8	0;1	8	n	0.08	1.5	17	0;3	17	n	0.46	6.0	7	6;6	7	y	0.09	0.5	5	0;1	5	n	0.33	5.5	11	2;9	11	y	0.06	0.5	8	0;1	8	n	0.25	1.0	3	0;2	3	n	0.00	0.0	1	0;0	1	n	0.00	0.0	4	0;0	4	n	ENSMUSG00000049878.14	Rlf	chr4	protein_coding	rearranged L-myc fusion sequence
novel_NIR_13180	chr4	121028683	121039803	-	121028017	121039803	A3SS	ENSMUST00000168615.8	novel	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.12	5	37	5	37	n	0.11	1	8	1	8	n	0.15	3	17	3	17	y	0.46	6	7	6	7	n	0.17	1	5	1	5	n	0.45	9	11	9	11	n	0.11	1	8	1	8	n	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000049878.14	Rlf	chr4	protein_coding	rearranged L-myc fusion sequence
novel_NIR_13181	chr4	121047455	121048274	-	121047455	121072032	A5SS	ENSMUST00000056635.13	novel	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	24	0	24	n	0.00	0	17	0	17	n	0.00	0	12	0	12	n	0.00	0	17	0	17	n	0.27	3	8	3	8	y	0.00	0	22	0	22	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	ENSMUSG00000049878.14	Rlf	chr4	protein_coding	rearranged L-myc fusion sequence
novel_NIR_13182	chr4	12140383	12140541	+	12140401	12140541	A5SS	ENSMUST00000050069.9	novel	0.00	0	2	0	2	n	1.00	4	0	4	0	y	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	9	0	9	n	ENSMUSG00000046667.15	Rbm12b1	chr4	protein_coding	RNA binding motif protein 12 B1
novel_NIR_13183	chr4	12140446	12140541	+	12140401	12140541	A5SS	ENSMUST00000050069.9	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	1.00	2	0	2	0	y	0.40	2	3	2	3	y	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	9	0	9	n	ENSMUSG00000046667.15	Rbm12b1	chr4	protein_coding	RNA binding motif protein 12 B1
novel_NIR_13184	chr4	12140605	12148540	+	12140605	12144652	3pMXE	ENSMUST00000146416.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000046667.15	Rbm12b1	chr4	protein_coding	RNA binding motif protein 12 B1
novel_NIR_13185	chr4	12140605	12155644	+	12140605	12144652	3pMXE	ENSMUST00000146416.2	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000046667.15	Rbm12b1	chr4	protein_coding	RNA binding motif protein 12 B1
novel_NIR_13186	chr4	12140690	12143410	+	12140605	12143410	A5SS	ENSMUST00000050069.9	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000046667.15	Rbm12b1	chr4	protein_coding	RNA binding motif protein 12 B1
novel_NIR_13187	chr4	12143459	12155644	+	12143459	12144002	3pMXE	ENSMUST00000050069.9	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000046667.15	Rbm12b1	chr4	protein_coding	RNA binding motif protein 12 B1
novel_NIR_13188	chr4	12143459	12155644	+	12143459	12144568	3pMXE	ENSMUST00000138008.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000046667.15	Rbm12b1	chr4	protein_coding	RNA binding motif protein 12 B1
novel_NIR_13189	chr4	12164192	12165726	-	12164192	12164269	A5SS&ES	ENSMUST00000177837.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000028218.20	Cibar1	chr4	protein_coding	CBY1 interacting BAR domain containing 1
novel_NIR_13190	chr4	12164192	12165726	-	12164192	12165766	A5SS	ENSMUST00000108285.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000028218.20	Cibar1	chr4	protein_coding	CBY1 interacting BAR domain containing 1
novel_NIR_13191	chr4	12164192	12165726	-	12164192	12168179	A5SS	ENSMUST00000126012.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000028218.20	Cibar1	chr4	protein_coding	CBY1 interacting BAR domain containing 1
novel_NIR_13192	chr4	12164192	12165726	-	12164192	12168229	A5SS	ENSMUST00000087052.11	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	5	0	5	n	0.17	1	5	1	5	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	ENSMUSG00000028218.20	Cibar1	chr4	protein_coding	CBY1 interacting BAR domain containing 1
novel_NIR_13193	chr4	12164192	12166844	-	12164192	12164269	A5SS&ES	ENSMUST00000177837.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000028218.20	Cibar1	chr4	protein_coding	CBY1 interacting BAR domain containing 1
novel_NIR_13194	chr4	12164192	12166844	-	12164192	12165766	A5SS&ES	ENSMUST00000108285.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000028218.20	Cibar1	chr4	protein_coding	CBY1 interacting BAR domain containing 1
novel_NIR_13195	chr4	12164192	12166844	-	12164192	12168179	A5SS	ENSMUST00000126012.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000028218.20	Cibar1	chr4	protein_coding	CBY1 interacting BAR domain containing 1
novel_NIR_13196	chr4	12164192	12166844	-	12164192	12168229	A5SS	ENSMUST00000087052.11	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.40	2	3	2	3	y	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.00	0	5	0	5	n	0.29	2	5	2	5	y	0.40	2	3	2	3	y	0.00	0	3	0	3	n	ENSMUSG00000028218.20	Cibar1	chr4	protein_coding	CBY1 interacting BAR domain containing 1
novel_NIR_13197	chr4	122742328	122748173	+	122742328	122743400	3pMXE	ENSMUST00000097902.5	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000028657.15	Ppt1	chr4	protein_coding	palmitoyl-protein thioesterase 1
novel_NIR_13198	chr4	122742328	122749599	+	122742328	122743400	3pMXE	ENSMUST00000097902.5	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000028657.15	Ppt1	chr4	protein_coding	palmitoyl-protein thioesterase 1
novel_NIR_13199	chr4	122853194	122854740	-	122853194	122853685	5pMXE	ENSMUST00000138964.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028655.12	Mfsd2a	chr4	protein_coding	major facilitator superfamily domain containing 2A
novel_NIR_13200	chr4	122855211	122855702	+	122855211	122855741	A3SS	ENSMUST00000135313.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000086443.2	4933421A08Rik	chr4	lncRNA	RIKEN cDNA 4933421A08 gene
novel_NIR_13201	chr4	122938429	122942562	+	122938429;122940810	122940668;122942562	ES	ENSMUST00000102649.4	novel	0.00	0	21.0	0	26;16	n	0.10	1	9.0	1	8;10	n	0.00	0	21.5	0	26;17	n	0.00	0	17.5	0	21;14	n	0.00	0	31.0	0	29;33	n	0.05	1	17.5	1	21;14	n	0.00	0	16.5	0	20;13	n	0.17	3	15.0	3	17;13	y	0.00	0	17.5	0	17;18	n	0.00	0	18.5	0	17;20	n	0.00	0	21.5	0	27;16	n	0.06	1	16.5	1	19;14	n	ENSMUSG00000028653.17	Trit1	chr4	protein_coding	tRNA isopentenyltransferase 1
novel_NIR_13202	chr4	122938429	122943270	+	122942673	122943270	5pMXE	ENSMUST00000141855.2	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.38	3	5	3	5	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000028653.17	Trit1	chr4	protein_coding	tRNA isopentenyltransferase 1
novel_NIR_13203	chr4	123029470	123030621	-	123029470	123030594	A5SS	ENSMUST00000136466.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028651.13	Ppie	chr4	protein_coding	peptidylprolyl isomerase E (cyclophilin E)
novel_NIR_13204	chr4	123029470	123030634	-	123029470	123030594	A5SS	ENSMUST00000136466.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000028651.13	Ppie	chr4	protein_coding	peptidylprolyl isomerase E (cyclophilin E)
novel_NIR_13205	chr4	123032757	123033703	-	123032757	123033695	A5SS	ENSMUST00000030404.5	novel	0.22	5	18	5	18	y	0.08	2	24	2	24	n	0.00	0	16	0	16	n	0.00	0	19	0	19	n	0.00	0	26	0	26	n	0.00	0	11	0	11	n	0.07	2	25	2	25	n	0.14	3	18	3	18	n	0.00	0	18	0	18	n	0.03	1	29	1	29	n	0.00	0	25	0	25	n	0.08	3	33	3	33	n	ENSMUSG00000028651.13	Ppie	chr4	protein_coding	peptidylprolyl isomerase E (cyclophilin E)
novel_NIR_13206	chr4	123191844	123192306	+	123191886	123192306	A5SS	ENSMUST00000106243.8	novel	0.10	13	121	13	121	n	0.13	18	117	18	117	n	0.11	18	146	18	146	n	0.14	12	71	12	71	n	0.13	18	117	18	117	n	0.07	6	78	6	78	n	0.01	2	158	2	158	n	0.19	14	61	14	61	y	0.14	11	65	11	65	n	0.14	16	95	16	95	n	0.07	10	131	10	131	n	0.08	10	122	10	122	n	ENSMUSG00000011257.20	Pabpc4	chr4	protein_coding	poly(A) binding protein, cytoplasmic 4
novel_NIR_13207	chr4	123609874	123611829	-	123609874	123611816	A5SS	ENSMUST00000106206.8	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	ENSMUSG00000028648.14	Ndufs5	chr4	protein_coding	NADH:ubiquinone oxidoreductase core subunit S5
novel_NIR_13208	chr4	123609874	123611829	-	123609874	123611901	A5SS	ENSMUST00000137312.2	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.20	1	4	1	4	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.00	0	5	0	5	n	0.09	1	10	1	10	n	0.29	2	5	2	5	y	0.00	0	11	0	11	n	ENSMUSG00000028648.14	Ndufs5	chr4	protein_coding	NADH:ubiquinone oxidoreductase core subunit S5
novel_NIR_13209	chr4	124635714	124635990	-	124635714	124638780	A5SS	ENSMUST00000131381.2	novel	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000086589.2	Gm12915	chr4	lncRNA	predicted gene 12915
novel_NIR_13210	chr4	124636383	124636726	+	124636383	124636729	A3SS	ENSMUST00000094782.10	novel	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.03	1	32	1	32	n	0.00	0	25	0	25	n	0.19	4	17	4	17	y	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.06	1	16	1	16	n	0.00	0	6	0	6	n	0.00	0	19	0	19	n	ENSMUSG00000028894.19	Inpp5b	chr4	protein_coding	inositol polyphosphate-5-phosphatase B
novel_NIR_13211	chr4	124645485	124669390	+	124663248	124669390	5pMXE	ENSMUST00000145359.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028894.19	Inpp5b	chr4	protein_coding	inositol polyphosphate-5-phosphatase B
novel_NIR_13212	chr4	124687202	124689091	+	124687202	124687395	A3SS&ES	ENSMUST00000184454.8	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000028894.19	Inpp5b	chr4	protein_coding	inositol polyphosphate-5-phosphatase B
novel_NIR_13213	chr4	124687447	124689091	+	124687447	124689149	A3SS	ENSMUST00000184454.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	ENSMUSG00000028894.19	Inpp5b	chr4	protein_coding	inositol polyphosphate-5-phosphatase B
novel_NIR_13214	chr4	124732710	124736324	+	124732710	124736321	A3SS	ENSMUST00000106193.8	novel	0.00	0	24	0	24	n	0.23	5	17	5	17	y	0.04	1	22	1	22	n	0.00	0	31	0	31	n	0.19	5	22	5	22	y	0.09	2	21	2	21	n	0.12	3	21	3	21	n	0.14	2	12	2	12	n	0.14	2	12	2	12	n	0.09	3	31	3	31	n	0.06	1	16	1	16	n	0.11	3	24	3	24	n	ENSMUSG00000028890.14	Mtf1	chr4	protein_coding	metal response element binding transcription factor 1
novel_NIR_13215	chr4	124743618	124744025	-	124743755	124744025	A3SS	ENSMUST00000163946.2	novel	0.11	10	80	10	80	n	0.15	16	92	16	92	y	0.05	11	204	11	204	n	0.00	0	71	0	71	n	0.04	7	151	7	151	n	0.04	5	120	5	120	n	0.05	5	103	5	103	n	0.04	4	91	4	91	n	0.09	7	74	7	74	n	0.07	10	127	10	127	n	0.11	16	127	16	127	n	0.07	6	81	6	81	n	ENSMUSG00000078570.11	1110065P20Rik	chr4	protein_coding	RIKEN cDNA 1110065P20 gene
novel_NIR_13216	chr4	124929102	124934730	+	124929102	124931315	3pMXE	ENSMUST00000106176.8	novel	0.15	8	47	8	47	y	0.13	4	27	4	27	n	0.05	10	178	10	178	n	0.03	1	36	1	36	n	0.12	10	70	10	70	n	0.03	2	56	2	56	n	0.10	7	60	7	60	n	0.05	2	42	2	42	n	0.06	3	45	3	45	n	0.10	5	47	5	47	n	0.12	4	29	4	29	n	0.09	4	42	4	42	n	ENSMUSG00000028869.14	Gnl2	chr4	protein_coding	guanine nucleotide binding protein-like 2 (nucleolar)
novel_NIR_13217	chr4	125015026	125016047	-	125014899	125016047	A3SS	ENSMUST00000036188.8	novel	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	64	0	64	n	0.00	0	7	0	7	n	0.00	0	32	0	32	n	0.00	0	43	0	43	n	0.00	0	29	0	29	n	0.00	0	61	0	61	n	0.00	0	11	0	11	n	0.00	0	20	0	20	n	0.00	0	8	0	8	n	0.15	2	11	2	11	y	ENSMUSG00000042677.8	Zc3h12a	chr4	protein_coding	zinc finger CCCH type containing 12A
novel_NIR_13218	chr4	125920932	125921110	+	125919972	125921110	A5SS	ENSMUST00000106162.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028859.15	Csf3r	chr4	protein_coding	colony stimulating factor 3 receptor (granulocyte)
novel_NIR_13219	chr4	125925714	125925889	+	125925714	125925905	A3SS	ENSMUST00000106162.8	novel	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.75	3	1	3	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028859.15	Csf3r	chr4	protein_coding	colony stimulating factor 3 receptor (granulocyte)
novel_NIR_13220	chr4	125925714	125927963	+	125925714;125926092	125925905;125927963	ES	ENSMUST00000106162.8	novel	0.00	0	2.5	0	2;3	n	0.00	0	1.0	0	0;2	n	0.40	2	3.0	2	2;4	y	-	-	-	-	-	-	0.00	0	2.5	0	2;3	n	0.00	0	1.5	0	1;2	n	0.00	0	5.0	0	5;5	n	0.00	0	2.0	0	2;2	n	0.00	0	2.0	0	1;3	n	0.00	0	1.5	0	1;2	n	0.00	0	1.0	0	0;2	n	-	-	-	-	-	-	ENSMUSG00000028859.15	Csf3r	chr4	protein_coding	colony stimulating factor 3 receptor (granulocyte)
novel_NIR_13221	chr4	125929772	125931173	+	125929772	125931313	A3SS	ENSMUST00000106162.8	novel	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000028859.15	Csf3r	chr4	protein_coding	colony stimulating factor 3 receptor (granulocyte)
novel_NIR_13222	chr4	125984818	125991622	+	125990500	125991622	5pMXE	ENSMUST00000179323.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	ENSMUSG00000050188.9	Lsm10	chr4	protein_coding	U7 snRNP-specific Sm-like protein LSM10
novel_NIR_13223	chr4	125990721	125991622	+	125990500	125991622	A5SS	ENSMUST00000179323.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.60	3	2	3	2	y	0.67	2	1	2	1	y	0.00	0	1	0	1	n	1.00	2	0	2	0	y	ENSMUSG00000050188.9	Lsm10	chr4	protein_coding	U7 snRNP-specific Sm-like protein LSM10
novel_NIR_13224	chr4	126078977	126080228	-	126078935	126080228	A3SS	ENSMUST00000123008.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	6	0	6	n	-	-	-	-	-	-	1.00	5	0	5	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000043962.17	Thrap3	chr4	protein_coding	thyroid hormone receptor associated protein 3
novel_NIR_13225	chr4	126088197	126095596	-	126080381	126095596	A3SS	ENSMUST00000142125.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000043962.17	Thrap3	chr4	protein_coding	thyroid hormone receptor associated protein 3
novel_NIR_13226	chr4	126088197	126095596	-	126088197	126094739	A5SS&ES	ENSMUST00000169403.8	novel	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	ENSMUSG00000043962.17	Thrap3	chr4	protein_coding	thyroid hormone receptor associated protein 3
novel_NIR_13227	chr4	126088197	126095596	-	126088197	126095315	A5SS&ES	ENSMUST00000130334.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000043962.17	Thrap3	chr4	protein_coding	thyroid hormone receptor associated protein 3
novel_NIR_13228	chr4	126088197	126095596	-	126088197	126096363	A5SS	ENSMUST00000168568.8	novel	0.50	3	3	3	3	y	0.00	0	11	0	11	n	0.00	0	23	0	23	n	0.00	0	14	0	14	n	0.00	0	32	0	32	n	0.00	0	18	0	18	n	0.05	1	20	1	20	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	14	0	14	n	0.00	0	18	0	18	n	0.08	2	24	2	24	n	ENSMUSG00000043962.17	Thrap3	chr4	protein_coding	thyroid hormone receptor associated protein 3
novel_NIR_13229	chr4	126132425	126133825	-	126131071	126133825	A3SS	ENSMUST00000106132.3	novel	0.46	13	15	13	15	y	0.21	6	23	6	23	y	0.31	10	22	10	22	y	0.41	12	17	12	17	y	0.25	12	36	12	36	y	0.21	6	23	6	23	y	0.30	11	26	11	26	y	0.43	9	12	9	12	y	0.32	7	15	7	15	y	0.39	11	17	11	17	y	0.44	7	9	7	9	y	0.33	7	14	7	14	y	ENSMUSG00000028849.18	Map7d1	chr4	protein_coding	MAP7 domain containing 1
novel_NIR_13230	chr4	126132425	126133825	-	126132425	126133816	A5SS	ENSMUST00000122129.8	novel	0.41	13	19	13	19	y	0.21	6	23	6	23	y	0.24	10	32	10	32	y	0.32	12	25	12	25	y	0.24	12	39	12	39	y	0.21	6	23	6	23	y	0.33	11	22	11	22	y	0.43	9	12	9	12	y	0.39	7	11	7	11	y	0.28	11	28	11	28	y	0.29	7	17	7	17	y	0.27	7	19	7	19	y	ENSMUSG00000028849.18	Map7d1	chr4	protein_coding	MAP7 domain containing 1
novel_NIR_13231	chr4	126270834	126286264	-	126270834	126296958	A5SS	ENSMUST00000069097.13	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.25	2	6	2	6	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.14	1	6	1	6	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000028842.16	Ago3	chr4	protein_coding	argonaute RISC catalytic subunit 3
novel_NIR_13232	chr4	126403928	126405519	-	126403928;126405326	126405193;126405519	ES	ENSMUST00000084289.5	novel	-	-	-	-	-	-	0.00	0	1.0	0	0;2	n	0.00	0	3.0	0	2;4	n	0.00	0	1.5	0	3;0	n	0.29	2	5.0	2	5;5	y	0.67	2	1.0	2	1;1	y	0.00	0	1.0	0	2;0	n	0.00	0	2.0	0	2;2	n	-	-	-	-	-	-	0.00	0	2.0	0	4;0	n	-	-	-	-	-	-	0.00	0	2.0	0	2;2	n	ENSMUSG00000042500.12	Ago4	chr4	protein_coding	argonaute RISC catalytic subunit 4
novel_NIR_13233	chr4	126645874	126646310	-	126645874	126647118	A5SS	ENSMUST00000127079.2	novel	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.75	3	1	3	1	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	ENSMUSG00000028833.14	Ncdn	chr4	protein_coding	neurochondrin
novel_NIR_13234	chr4	126650861	126670009	+	126650861	126682074	A3SS	ENSMUST00000131900.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000028830.15	AU040320	chr4	protein_coding	expressed sequence AU040320
novel_NIR_13235	chr4	126650861	126680508	+	126650861	126682074	A3SS	ENSMUST00000131900.2	novel	0.00	0	2	0	2	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	4	0	4	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000028830.15	AU040320	chr4	protein_coding	expressed sequence AU040320
novel_NIR_13236	chr4	126650861	126680508	+	126650861	126685568	A3SS	ENSMUST00000148935.8	novel	0.00	0	27	0	27	n	0.04	1	24	1	24	n	0.02	1	60	1	60	n	0.00	0	42	0	42	n	0.00	0	47	0	47	n	0.15	4	22	4	22	y	0.08	3	34	3	34	n	0.00	0	32	0	32	n	0.00	0	20	0	20	n	0.00	0	39	0	39	n	0.00	0	15	0	15	n	0.00	0	26	0	26	n	ENSMUSG00000028830.15	AU040320	chr4	protein_coding	expressed sequence AU040320
novel_NIR_13237	chr4	126650861	126681770	+	126650861	126682074	A3SS	ENSMUST00000131900.2	novel	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	2	0	2	0	n	-	-	-	-	-	-	0.50	3	3	3	3	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	ENSMUSG00000028830.15	AU040320	chr4	protein_coding	expressed sequence AU040320
novel_NIR_13238	chr4	126650861;126681990	126681770;126682074	+	126650861	126682074	cassetteExon	ENSMUST00000131900.2	novel	0.50	2.0	2	1;3	2	n	-	-	-	-	-	-	1.00	3.5	0	2;5	0	y	-	-	-	-	-	-	0.33	1.5	3	3;0	3	n	1.00	2.0	0	0;4	0	n	1.00	3.0	0	1;5	0	n	1.00	1.5	0	2;1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0.0	1	0;0	1	n	0.60	1.5	1	1;2	1	n	ENSMUSG00000028830.15	AU040320	chr4	protein_coding	expressed sequence AU040320
novel_NIR_13239	chr4	126681990	126682074	+	126650861	126682074	A5SS	ENSMUST00000131900.2	novel	0.60	3	2	3	2	n	-	-	-	-	-	-	1.00	5	0	5	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	4	0	4	0	y	1.00	5	0	5	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	n	ENSMUSG00000028830.15	AU040320	chr4	protein_coding	expressed sequence AU040320
novel_NIR_13240	chr4	126682187	126685568	+	126650861	126685568	A5SS	ENSMUST00000148935.8	novel	0.13	4	27	4	27	n	0.08	2	24	2	24	n	0.05	3	60	3	60	n	0.00	0	42	0	42	n	0.00	0	47	0	47	n	0.29	9	22	9	22	y	0.00	0	34	0	34	n	0.18	7	32	7	32	n	0.00	0	20	0	20	n	0.00	0	39	0	39	n	0.00	0	15	0	15	n	0.00	0	26	0	26	n	ENSMUSG00000028830.15	AU040320	chr4	protein_coding	expressed sequence AU040320
novel_NIR_13241	chr4	126762758	126771422	-	126762758	126763976	5pMXE	ENSMUST00000150467.2	novel	0.00	0	7	0	7	n	0.17	1	5	1	5	n	0.05	1	18	1	18	n	0.11	1	8	1	8	n	0.15	2	11	2	11	y	0.00	0	8	0	8	n	0.00	0	15	0	15	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.40	4	6	4	6	y	ENSMUSG00000042446.17	Zmym4	chr4	protein_coding	zinc finger, MYM-type 4
novel_NIR_13242	chr4	126762758	126771422	-	126762758;126764087	126763976;126771422	ES	ENSMUST00000135003.2	novel	0.00	0	7.5	0	7;8	n	0.17	1	5.0	1	5;5	n	0.06	1	17.0	1	18;16	n	0.17	1	5.0	1	8;2	n	0.13	2	13.0	2	11;15	n	0.00	0	8.5	0	8;9	n	0.00	0	9.0	0	15;3	n	0.00	0	9.0	0	11;7	n	0.00	0	8.5	0	8;9	n	0.00	0	11.5	0	10;13	n	0.00	0	4.5	0	3;6	n	0.33	4	8.0	4	6;10	y	ENSMUSG00000042446.17	Zmym4	chr4	protein_coding	zinc finger, MYM-type 4
novel_NIR_13243	chr4	126794538	126796336	-	126794541	126796336	A3SS	ENSMUST00000135003.2	novel	0.60	3	2	3	2	y	-	-	-	-	-	-	0.55	6	5	6	5	y	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.29	2	5	2	5	y	0.50	4	4	4	4	y	0.50	2	2	2	2	y	0.50	1	1	1	1	n	0.70	7	3	7	3	y	0.40	2	3	2	3	y	0.44	4	5	4	5	y	ENSMUSG00000042446.17	Zmym4	chr4	protein_coding	zinc finger, MYM-type 4
novel_NIR_13244	chr4	126799940	126800879	-	126799940	126800314	A5SS&ES	ENSMUST00000152952.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.75	3	1	3	1	y	ENSMUSG00000042446.17	Zmym4	chr4	protein_coding	zinc finger, MYM-type 4
novel_NIR_13245	chr4	126799940	126800879	-	126799940	126804583	A5SS	ENSMUST00000135003.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	ENSMUSG00000042446.17	Zmym4	chr4	protein_coding	zinc finger, MYM-type 4
novel_NIR_13246	chr4	126799940	126800879	-	126799940;126800429	126800314;126800879	ES	ENSMUST00000106108.9	novel	0.00	0	0.5	0	1;0	n	0.00	0	1.5	0	0;3	n	0.00	0	4.0	0	5;3	n	0.00	0	5.0	0	8;2	n	0.00	0	7.0	0	6;8	n	0.00	0	2.5	0	3;2	n	0.00	0	2.0	0	3;1	n	0.00	0	3.5	0	2;5	n	0.00	0	1.0	0	1;1	n	0.00	0	4.0	0	6;2	n	0.00	0	2.0	0	3;1	n	0.46	3	3.5	3	1;6	y	ENSMUSG00000042446.17	Zmym4	chr4	protein_coding	zinc finger, MYM-type 4
novel_NIR_13247	chr4	126984955	126986705	+	126982129	126986705	A5SS	ENSMUST00000151461.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000042408.14	Zmym6	chr4	protein_coding	zinc finger, MYM-type 6
novel_NIR_13248	chr4	126984955	126986705	+	126982347	126986705	A5SS	ENSMUST00000046751.13	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.15	2	11	2	11	y	0.40	2	3	2	3	y	0.10	1	9	1	9	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	ENSMUSG00000042408.14	Zmym6	chr4	protein_coding	zinc finger, MYM-type 6
novel_NIR_13249	chr4	127009171	127014221	+	127003755	127014221	A5SS	ENSMUST00000046751.13	novel	0.06	1	16	1	16	n	0.00	0	16	0	16	n	0.00	0	17	0	17	n	0.07	1	13	1	13	n	0.05	1	21	1	21	n	0.00	0	4	0	4	n	0.00	0	16	0	16	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.22	2	7	2	7	y	ENSMUSG00000042408.14	Zmym6	chr4	protein_coding	zinc finger, MYM-type 6
novel_NIR_13250	chr4	127424482	127425237	+	127424443	127425237	A5SS	ENSMUST00000239342.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	4	0	4	0	y	0.50	2	2	2	2	y	0.46	6	7	6	7	y	-	-	-	-	-	-	ENSMUSG00000087470.3	A630031M04Rik	chr4	lncRNA	RIKEN cDNA A630031M04 gene
novel_NIR_13251	chr4	128480637	128483875	-	128480637	128481809	A5SS&ES	ENSMUST00000097877.9	novel	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000061894.16	Zscan20	chr4	protein_coding	zinc finger and SCAN domains 20
novel_NIR_13252	chr4	128498505	128501245	-	128498505	128502823	A5SS	ENSMUST00000141040.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000061894.16	Zscan20	chr4	protein_coding	zinc finger and SCAN domains 20
novel_NIR_13253	chr4	128498505	128501245	-	128498505	128503691	A5SS	ENSMUST00000147876.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000061894.16	Zscan20	chr4	protein_coding	zinc finger and SCAN domains 20
novel_NIR_13254	chr4	128498505	128501245	-	128498505	128503787	A5SS	ENSMUST00000097877.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000061894.16	Zscan20	chr4	protein_coding	zinc finger and SCAN domains 20
novel_NIR_13255	chr4	128498505	128501245	-	128498505	128503803	A5SS	ENSMUST00000135309.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061894.16	Zscan20	chr4	protein_coding	zinc finger and SCAN domains 20
novel_NIR_13256	chr4	128621663	128637187	+	128621663	128621880	A3SS&ES	ENSMUST00000133439.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028796.18	Phc2	chr4	protein_coding	polyhomeotic 2
novel_NIR_13257	chr4	128621663	128637187	+	128621663	128637147	A3SS	ENSMUST00000106079.10	novel	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	26	0	26	n	0.15	2	11	2	11	y	0.00	0	23	0	23	n	0.00	0	20	0	20	n	0.00	0	13	0	13	n	0.00	0	15	0	15	n	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.00	0	21	0	21	n	0.00	0	10	0	10	n	ENSMUSG00000028796.18	Phc2	chr4	protein_coding	polyhomeotic 2
novel_NIR_13258	chr4	128621663	128637187	+	128621663	128637149	A3SS	ENSMUST00000143632.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028796.18	Phc2	chr4	protein_coding	polyhomeotic 2
novel_NIR_13259	chr4	128683413	128683657	-	128681013	128683657	A3SS	ENSMUST00000106072.9	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000028799.16	Zfp362	chr4	protein_coding	zinc finger protein 362
novel_NIR_13260	chr4	128683413	128683657	-	128683353	128683657	A3SS	ENSMUST00000138371.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028799.16	Zfp362	chr4	protein_coding	zinc finger protein 362
novel_NIR_13261	chr4	128688769	128699212	-	128688769	128699805	A5SS	ENSMUST00000106072.9	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.40	2	3	2	3	y	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000028799.16	Zfp362	chr4	protein_coding	zinc finger protein 362
novel_NIR_13262	chr4	128883193	128892927	+	128885873	128892927	5pMXE	ENSMUST00000141982.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028792.15	Ak2	chr4	protein_coding	adenylate kinase 2
novel_NIR_13263	chr4	128887327	128892927	+	128885873	128892927	A5SS	ENSMUST00000141982.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000028792.15	Ak2	chr4	protein_coding	adenylate kinase 2
novel_NIR_13264	chr4	128887947	128892927	+	128885873	128892927	A5SS	ENSMUST00000141982.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000028792.15	Ak2	chr4	protein_coding	adenylate kinase 2
novel_NIR_13265	chr4	129077510	129083317	-	129077510	129083165	A5SS	ENSMUST00000106061.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000040928.16	S100pbp	chr4	protein_coding	S100P binding protein
novel_NIR_13266	chr4	129077510	129083317	-	129077510	129083335	A5SS	ENSMUST00000072431.13	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.40	2	3	2	3	y	0.20	1	4	1	4	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	ENSMUSG00000040928.16	S100pbp	chr4	protein_coding	S100P binding protein
novel_NIR_13267	chr4	129077510	129085140	-	129077510	129083165	5pMXE	ENSMUST00000106061.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000040928.16	S100pbp	chr4	protein_coding	S100P binding protein
novel_NIR_13268	chr4	129077510	129085140	-	129077510	129083335	5pMXE	ENSMUST00000072431.13	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.29	2	5	2	5	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.14	1	6	1	6	n	0.14	1	6	1	6	n	0.08	1	11	1	11	n	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	ENSMUSG00000040928.16	S100pbp	chr4	protein_coding	S100P binding protein
novel_NIR_13269	chr4	129107206	129107742	+	129106606	129107742	A5SS	ENSMUST00000137591.2	novel	1.00	4	0	4	0	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028811.13	Yars	chr4	protein_coding	tyrosyl-tRNA synthetase
novel_NIR_13270	chr4	129238041	129240604	+	129238041	129247117	A3SS	ENSMUST00000146767.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000057572.16	Zbtb8os	chr4	protein_coding	zinc finger and BTB domain containing 8 opposite strand
novel_NIR_13271	chr4	129360227	129360616	+	129359234	129360616	A5SS	ENSMUST00000154368.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	ENSMUSG00000040859.15	Bsdc1	chr4	protein_coding	BSD domain containing 1
novel_NIR_13272	chr4	129471085	129471911	-	129471088	129471911	A3SS	ENSMUST00000052835.9	novel	0.00	0	23	0	23	n	0.00	0	27	0	27	n	0.00	0	23	0	23	n	0.05	1	19	1	19	n	0.00	0	27	0	27	n	0.00	0	11	0	11	n	0.00	0	35	0	35	n	0.00	0	7	0	7	n	0.24	4	13	4	13	y	0.09	1	10	1	10	n	0.00	0	32	0	32	n	0.00	0	21	0	21	n	ENSMUSG00000050493.9	Fam167b	chr4	protein_coding	family with sequence similarity 167, member B
novel_NIR_13273	chr4	129493079	129494202	-	129489206	129494202	A3SS	ENSMUST00000155428.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	2	0	2	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028798.17	Eif3i	chr4	protein_coding	eukaryotic translation initiation factor 3, subunit I
novel_NIR_13274	chr4	129495036	129496015	+	129494927	129496015	A5SS	ENSMUST00000173758.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
novel_NIR_13275	chr4	129495036	129496015	+	129495036	129500880	A3SS	ENSMUST00000173937.8	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.33	2	4	2	4	y	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
novel_NIR_13276	chr4	129495326	129496015	+	129494927	129496015	A5SS	ENSMUST00000173758.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
novel_NIR_13277	chr4	129495340	129495663	+	129494927	129495663	A5SS	ENSMUST00000150110.8	novel	0.00	0	26	0	26	n	0.00	0	23	0	23	n	0.00	0	15	0	15	n	0.00	0	23	0	23	n	0.00	0	15	0	15	n	0.25	2	6	2	6	y	0.00	0	19	0	19	n	0.00	0	10	0	10	n	0.00	0	23	0	23	n	0.00	0	22	0	22	n	0.00	0	19	0	19	n	0.00	0	22	0	22	n	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
novel_NIR_13278	chr4	129495340	129495663	+	129495326	129495663	A5SS	ENSMUST00000129515.8	novel	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.00	0	12	0	12	n	0.00	0	20	0	20	n	0.18	2	9	2	9	y	0.00	0	22	0	22	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.00	0	19	0	19	n	0.00	0	8	0	8	n	0.00	0	20	0	20	n	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
novel_NIR_13279	chr4	129495340	129495663	+	129495418	129495663	A5SS	ENSMUST00000174610.2	novel	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
novel_NIR_13280	chr4	129495754	129496015	+	129494927	129496015	A5SS	ENSMUST00000173758.8	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	8	0	8	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
novel_NIR_13281	chr4	129500972	129501252	+	129500972	129501255	A3SS	ENSMUST00000181579.8	novel	0.00	0	2	0	2	n	0.69	11	5	11	5	y	1.00	15	0	15	0	y	1.00	5	0	5	0	y	0.32	6	13	6	13	y	1.00	9	0	9	0	y	0.57	17	13	17	13	y	-	-	-	-	-	-	1.00	4	0	4	0	y	0.73	8	3	8	3	y	1.00	3	0	3	0	y	1.00	8	0	8	0	y	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
novel_NIR_13282	chr4	129500972	129501252	+	129500972	129512277	A3SS	ENSMUST00000137090.8	novel	0.00	0	1	0	1	n	1.00	11	0	11	0	y	0.94	15	1	15	1	y	1.00	5	0	5	0	y	1.00	6	0	6	0	y	1.00	9	0	9	0	y	1.00	17	0	17	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	8	0	8	0	y	1.00	3	0	3	0	y	1.00	8	0	8	0	n	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
novel_NIR_13283	chr4	129500972	129501252	+	129500972	129517427	A3SS	ENSMUST00000174073.8	novel	-	-	-	-	-	-	1.00	11	0	11	0	y	1.00	15	0	15	0	y	1.00	5	0	5	0	y	1.00	6	0	6	0	y	1.00	9	0	9	0	y	1.00	17	0	17	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	8	0	8	0	y	1.00	3	0	3	0	y	0.89	8	1	8	1	y	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
novel_NIR_13284	chr4	129503106	129503408	-	129502978	129503408	A3SS	ENSMUST00000179209.8	novel	1.00	1	0	1	0	n	0.33	2	4	2	4	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.80	4	1	4	1	y	-	-	-	-	-	-	0.50	3	3	3	3	y	ENSMUSG00000078552.11	Dcdc2b	chr4	protein_coding	doublecortin domain containing 2b
novel_NIR_13285	chr4	129511694	129512285	-	129511709	129512285	A3SS	ENSMUST00000046675.12	novel	0.00	0	16	0	16	n	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.06	1	15	1	15	n	0.00	0	29	0	29	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.09	1	10	1	10	n	0.20	2	8	2	8	y	0.05	1	21	1	21	n	0.00	0	13	0	13	n	0.00	0	17	0	17	n	ENSMUSG00000040795.13	Iqcc	chr4	protein_coding	IQ motif containing C
novel_NIR_13286	chr4	129511694	129512285	-	129512155	129512285	3pMXE	ENSMUST00000121442.2	novel	0.00	0	18	0	18	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.11	1	8	1	8	n	0.00	0	14	0	14	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.25	1	3	1	3	n	0.15	2	11	2	11	y	0.05	1	20	1	20	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	ENSMUSG00000040795.13	Iqcc	chr4	protein_coding	IQ motif containing C
novel_NIR_13287	chr4	129597853	129603354	-	129597853	129605897	A5SS	ENSMUST00000129342.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028790.14	Khdrbs1	chr4	protein_coding	KH domain containing, RNA binding, signal transduction associated 1
novel_NIR_13288	chr4	129607241	129607747	-	129607241	129609789	A5SS	ENSMUST00000129342.8	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000028790.14	Khdrbs1	chr4	protein_coding	KH domain containing, RNA binding, signal transduction associated 1
novel_NIR_13289	chr4	129719005	129732771	+	129706097	129732771	A5SS	ENSMUST00000132386.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028788.15	Ptp4a2	chr4	protein_coding	protein tyrosine phosphatase 4a2
novel_NIR_13290	chr4	129719005	129732771	+	129714541	129732771	A5SS	ENSMUST00000133662.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028788.15	Ptp4a2	chr4	protein_coding	protein tyrosine phosphatase 4a2
novel_NIR_13291	chr4	129719005	129732771	+	129714592	129732771	A5SS	ENSMUST00000127558.2	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.20	1	4	1	4	n	0.20	3	12	3	12	y	0.25	1	3	1	3	n	0.00	0	10	0	10	n	0.50	1	1	1	1	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	ENSMUSG00000028788.15	Ptp4a2	chr4	protein_coding	protein tyrosine phosphatase 4a2
novel_NIR_13292	chr4	130223467	130230867	-	130230737	130230867	3pMXE	ENSMUST00000129840.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	ENSMUSG00000028772.20	Zcchc17	chr4	protein_coding	zinc finger, CCHC domain containing 17
novel_NIR_13293	chr4	130232377	130247929	-	130232377	130238499	5pMXE	ENSMUST00000149755.9	novel	0.00	0	6	0	6	n	0.36	4	7	4	7	y	0.75	3	1	3	1	y	0.00	0	8	0	8	n	0.62	5	3	5	3	y	1.00	4	0	4	0	y	0.75	6	2	6	2	y	1.00	7	0	7	0	y	0.00	0	2	0	2	n	1.00	5	0	5	0	y	0.78	7	2	7	2	y	0.38	3	5	3	5	y	ENSMUSG00000028772.20	Zcchc17	chr4	protein_coding	zinc finger, CCHC domain containing 17
novel_NIR_13294	chr4	130232377	130247929	-	130232377;130243115	130243058;130247929	ES	ENSMUST00000134159.3	novel	0.00	0	74.5	0	81;68	n	0.07	4	53.5	4	59;48	n	0.04	3	77.5	3	82;73	n	0.00	0	58.0	0	64;52	n	0.06	5	79.5	5	82;77	n	0.08	4	46.5	4	52;41	n	0.07	6	79.5	6	93;66	n	0.15	7	38.5	7	39;38	y	0.00	0	49.5	0	51;48	n	0.07	5	62.0	5	72;52	n	0.11	7	58.0	7	65;51	n	0.05	3	63.0	3	73;53	n	ENSMUSG00000028772.20	Zcchc17	chr4	protein_coding	zinc finger, CCHC domain containing 17
novel_NIR_13295	chr4	130232377	130253669	-	130232377	130238499	5pMXE	ENSMUST00000149755.9	novel	0.33	3	6	3	6	y	0.50	7	7	7	7	y	0.50	1	1	1	1	n	0.20	2	8	2	8	y	0.57	4	3	4	3	y	1.00	1	0	1	0	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.67	4	2	4	2	y	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.17	1	5	1	5	n	ENSMUSG00000028772.20	Zcchc17	chr4	protein_coding	zinc finger, CCHC domain containing 17
novel_NIR_13296	chr4	130428421	130445468	+	130428421	130445465	A3SS	ENSMUST00000030315.13	novel	0.00	0	10	0	10	n	0.29	2	5	2	5	y	0.04	1	23	1	23	n	0.09	2	21	2	21	n	0.17	4	19	4	19	y	0.00	0	15	0	15	n	0.12	2	15	2	15	n	0.00	0	15	0	15	n	0.15	2	11	2	11	y	0.03	1	31	1	31	n	0.10	1	9	1	9	n	0.03	1	31	1	31	n	ENSMUSG00000028580.16	Pum1	chr4	protein_coding	pumilio RNA-binding family member 1
novel_NIR_13297	chr4	130428421	130445468	+	130428421	130455309	A3SS	ENSMUST00000105992.9	novel	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.20	1	4	1	4	n	0.50	2	2	2	2	y	0.44	4	5	4	5	y	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.00	0	6	0	6	n	0.67	2	1	2	1	y	0.11	1	8	1	8	n	1.00	1	0	1	0	n	0.14	1	6	1	6	n	ENSMUSG00000028580.16	Pum1	chr4	protein_coding	pumilio RNA-binding family member 1
novel_NIR_13298	chr4	130428421	130445468	+	130428421	130468774	A3SS	ENSMUST00000105991.9	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.50	2	2	2	2	y	0.67	4	2	4	2	y	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.25	1	3	1	3	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	ENSMUSG00000028580.16	Pum1	chr4	protein_coding	pumilio RNA-binding family member 1
novel_NIR_13299	chr4	130446662	130468774	+	130428421	130468774	A5SS	ENSMUST00000105991.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000028580.16	Pum1	chr4	protein_coding	pumilio RNA-binding family member 1
novel_NIR_13300	chr4	130480183	130490065	+	130480183;130481489	130481253;130490065	ES	ENSMUST00000030315.13	novel	0.25	7	20.5	7	11;30	y	0.07	1	13.5	1	7;20	n	0.09	3	29.0	3	32;26	n	0.10	5	45.0	5	35;55	n	0.03	1	29.5	1	27;32	n	0.00	0	12.5	0	13;12	n	0.11	4	33.0	4	33;33	n	0.00	0	24.0	0	25;23	n	0.04	1	25.0	1	22;28	n	0.08	4	46.0	4	37;55	n	0.00	0	27.0	0	19;35	n	0.11	5	40.0	5	32;48	n	ENSMUSG00000028580.16	Pum1	chr4	protein_coding	pumilio RNA-binding family member 1
novel_NIR_13301	chr4	131571279	131581027	+	131579736	131581027	A5SS&ES	ENSMUST00000137321.3	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000028910.13	Mecr	chr4	protein_coding	mitochondrial trans-2-enoyl-CoA reductase
novel_NIR_13302	chr4	131576244	131579635	+	131570989	131579635	A5SS	ENSMUST00000137321.3	novel	0.50	2	2	2	2	y	0.83	5	1	5	1	y	0.62	5	3	5	3	y	1.00	2	0	2	0	y	0.88	7	1	7	1	y	0.50	2	2	2	2	y	1.00	2	0	2	0	y	0.33	1	2	1	2	n	0.71	5	2	5	2	y	1.00	7	0	7	0	y	0.67	2	1	2	1	y	0.78	7	2	7	2	y	ENSMUSG00000028910.13	Mecr	chr4	protein_coding	mitochondrial trans-2-enoyl-CoA reductase
novel_NIR_13303	chr4	131576244	131581027	+	131579736	131581027	A5SS&ES	ENSMUST00000137321.3	novel	0.00	0	5	0	5	n	0.50	2	2	2	2	y	0.11	1	8	1	8	n	0.00	0	4	0	4	n	0.20	1	4	1	4	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	ENSMUSG00000028910.13	Mecr	chr4	protein_coding	mitochondrial trans-2-enoyl-CoA reductase
novel_NIR_13304	chr4	131579736	131580922	+	131579736	131581027	A3SS	ENSMUST00000137321.3	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000028910.13	Mecr	chr4	protein_coding	mitochondrial trans-2-enoyl-CoA reductase
novel_NIR_13305	chr4	131601164	131611587	+	131601181	131611587	A5SS	ENSMUST00000129966.8	novel	0.00	0	13	0	13	n	0.00	0	13	0	13	n	0.00	0	19	0	19	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.11	1	8	1	8	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.40	2	3	2	3	y	ENSMUSG00000028911.17	Srsf4	chr4	protein_coding	serine and arginine-rich splicing factor 4
novel_NIR_13306	chr4	131601974	131611587	+	131601181	131611587	A5SS	ENSMUST00000129966.8	novel	0.00	0	13	0	13	n	0.00	0	13	0	13	n	0.00	0	19	0	19	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.40	2	3	2	3	y	ENSMUSG00000028911.17	Srsf4	chr4	protein_coding	serine and arginine-rich splicing factor 4
novel_NIR_13307	chr4	131611793	131612667	+	131611793	131612620	A3SS	ENSMUST00000129966.8	novel	0.13	2	13	2	13	n	0.29	4	10	4	10	y	0.15	2	11	2	11	y	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.17	2	10	2	10	y	0.29	2	5	2	5	y	0.20	1	4	1	4	n	0.00	0	12	0	12	n	0.10	3	27	3	27	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	ENSMUSG00000028911.17	Srsf4	chr4	protein_coding	serine and arginine-rich splicing factor 4
novel_NIR_13308	chr4	131648532	131653815	-	131648532	131648735	5pMXE	ENSMUST00000238664.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000118394.2	Gm50475	chr4	lncRNA	predicted gene, 50475
novel_NIR_13309	chr4	131663178	131664365	-	131663178	131684954	A5SS	ENSMUST00000146443.8	novel	0.14	1	6	1	6	n	0.18	2	9	2	9	y	0.03	2	56	2	56	n	0.00	0	6	0	6	n	0.10	3	26	3	26	n	0.09	2	20	2	20	n	0.00	0	22	0	22	n	0.00	0	18	0	18	n	0.10	1	9	1	9	n	0.20	2	8	2	8	y	0.17	2	10	2	10	y	0.12	2	14	2	14	n	ENSMUSG00000028906.18	Epb41	chr4	protein_coding	erythrocyte membrane protein band 4.1
novel_NIR_13310	chr4	131663178	131682839	-	131663178	131684954	A5SS	ENSMUST00000146443.8	novel	0.25	2	6	2	6	y	0.18	2	9	2	9	y	0.02	1	56	1	56	n	0.14	1	6	1	6	n	0.00	0	26	0	26	n	0.00	0	20	0	20	n	0.04	1	22	1	22	n	0.00	0	18	0	18	n	0.00	0	9	0	9	n	0.27	3	8	3	8	y	0.09	1	10	1	10	n	0.07	1	14	1	14	n	ENSMUSG00000028906.18	Epb41	chr4	protein_coding	erythrocyte membrane protein band 4.1
novel_NIR_13311	chr4	131663178	131682839	-	131682467	131682839	3pMXE	ENSMUST00000141291.3	novel	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000028906.18	Epb41	chr4	protein_coding	erythrocyte membrane protein band 4.1
novel_NIR_13312	chr4	131663178	131682854	-	131663178	131684954	A5SS	ENSMUST00000146443.8	novel	0.25	2	6	2	6	y	0.00	0	9	0	9	n	0.05	3	56	3	56	n	0.14	1	6	1	6	n	0.00	0	26	0	26	n	0.00	0	20	0	20	n	0.04	1	22	1	22	n	0.10	2	18	2	18	n	0.00	0	9	0	9	n	0.20	2	8	2	8	y	0.00	0	10	0	10	n	0.07	1	14	1	14	n	ENSMUSG00000028906.18	Epb41	chr4	protein_coding	erythrocyte membrane protein band 4.1
novel_NIR_13313	chr4	131663178	131682854	-	131681504	131682854	3pMXE	ENSMUST00000212761.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000028906.18	Epb41	chr4	protein_coding	erythrocyte membrane protein band 4.1
novel_NIR_13314	chr4	131664775	131682839	-	131682467	131682839	3pMXE	ENSMUST00000141291.3	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028906.18	Epb41	chr4	protein_coding	erythrocyte membrane protein band 4.1
novel_NIR_13315	chr4	131664775	131682854	-	131681504	131682854	3pMXE	ENSMUST00000212761.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	6	0	6	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000028906.18	Epb41	chr4	protein_coding	erythrocyte membrane protein band 4.1
novel_NIR_13316	chr4	131734732	131798443	-	131734732	131802513	A5SS	ENSMUST00000105970.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028906.18	Epb41	chr4	protein_coding	erythrocyte membrane protein band 4.1
novel_NIR_13317	chr4	131955305	131958193	-	131955305	131958297	A5SS	ENSMUST00000168553.8	novel	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.27	3	8	3	8	y	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	ENSMUSG00000028901.14	Gmeb1	chr4	protein_coding	glucocorticoid modulatory element binding protein 1
novel_NIR_13318	chr4	131959454	131962053	-	131959454	131962060	A5SS	ENSMUST00000168553.8	novel	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	19	0	19	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.29	2	5	2	5	y	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	ENSMUSG00000028901.14	Gmeb1	chr4	protein_coding	glucocorticoid modulatory element binding protein 1
novel_NIR_13319	chr4	131969760	131978986	-	131969760	131973297	5pMXE	ENSMUST00000125534.2	novel	0.18	2	9	2	9	y	0.00	0	6	0	6	n	0.00	0	17	0	17	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.05	1	18	1	18	n	0.06	1	15	1	15	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	ENSMUSG00000028901.14	Gmeb1	chr4	protein_coding	glucocorticoid modulatory element binding protein 1
novel_NIR_13320	chr4	131969760	131978986	-	131969760;131973379	131973297;131978986	ES	ENSMUST00000168553.8	novel	0.20	2	8.0	2	9;7	y	0.00	0	4.5	0	6;3	n	0.00	0	18.0	0	17;19	n	0.00	0	6.5	0	5;8	n	0.00	0	10.0	0	9;11	n	0.00	0	2.5	0	4;1	n	0.00	0	12.0	0	14;10	n	0.00	0	10.0	0	5;15	n	0.06	1	14.5	1	18;11	n	0.09	1	10.5	1	15;6	n	0.00	0	9.5	0	11;8	n	0.00	0	10.0	0	7;13	n	ENSMUSG00000028901.14	Gmeb1	chr4	protein_coding	glucocorticoid modulatory element binding protein 1
novel_NIR_13321	chr4	132002063	132010105	+	132009389	132010105	A5SS&ES	ENSMUST00000105963.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028899.12	Taf12	chr4	protein_coding	TATA-box binding protein associated factor 12
novel_NIR_13322	chr4	132004095	132010105	+	132009389	132010105	A5SS&ES	ENSMUST00000105963.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.33	2	4	2	4	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028899.12	Taf12	chr4	protein_coding	TATA-box binding protein associated factor 12
novel_NIR_13323	chr4	132036932	132037149	+	132036252	132037149	A5SS	ENSMUST00000128000.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000086290.10	Snhg12	chr4	lncRNA	small nucleolar RNA host gene 12
novel_NIR_13324	chr4	132046885	132052519	-	132041678	132052519	A3SS	ENSMUST00000150959.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000028898.16	Trnau1ap	chr4	protein_coding	tRNA selenocysteine 1 associated protein 1
novel_NIR_13325	chr4	132052800	132055780	-	132052571	132055780	A3SS	ENSMUST00000137520.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000028898.16	Trnau1ap	chr4	protein_coding	tRNA selenocysteine 1 associated protein 1
novel_NIR_13326	chr4	132065549	132066295	-	132065549	132066514	A5SS	ENSMUST00000030726.13	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000028896.14	Rcc1	chr4	protein_coding	regulator of chromosome condensation 1
novel_NIR_13327	chr4	132065549	132066295	-	132065549	132067236	A5SS	ENSMUST00000084250.11	novel	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.20	2	8	2	8	y	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	ENSMUSG00000028896.14	Rcc1	chr4	protein_coding	regulator of chromosome condensation 1
novel_NIR_13328	chr4	132098431	132099284	-	132098431	132104491	A5SS	ENSMUST00000102568.10	novel	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.19	4	17	4	17	y	0.05	1	18	1	18	n	0.00	0	19	0	19	n	0.11	1	8	1	8	n	0.14	2	12	2	12	n	0.00	0	10	0	10	n	0.11	1	8	1	8	n	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	ENSMUSG00000066043.14	Phactr4	chr4	protein_coding	phosphatase and actin regulator 4
novel_NIR_13329	chr4	132465463	132465636	-	132465463	132465548	A5SS	ENSMUST00000030709.9	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028885.9	Smpdl3b	chr4	protein_coding	sphingomyelin phosphodiesterase, acid-like 3B
novel_NIR_13330	chr4	132631344	132636937	-	132631344	132640980	A5SS	ENSMUST00000097856.10	novel	0.18	2	9	2	9	y	0.00	0	7	0	7	n	0.13	2	13	2	13	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	16	0	16	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	26	0	26	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	ENSMUSG00000028878.12	Fam76a	chr4	protein_coding	family with sequence similarity 76, member A
novel_NIR_13331	chr4	132725154	132725279	+	132724882	132725279	A5SS	ENSMUST00000030693.13	novel	0.14	1	6	1	6	n	0.33	2	4	2	4	y	0.00	0	16	0	16	n	0.00	0	2	0	2	n	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000028874.15	Fgr	chr4	protein_coding	FGR proto-oncogene, Src family tyrosine kinase
novel_NIR_13332	chr4	133029135	133029694	-	133029138	133029694	A3SS	ENSMUST00000043305.14	novel	0.10	13	112	13	112	n	0.08	11	125	11	125	n	0.12	13	99	13	99	n	0.17	34	163	34	163	y	0.14	36	214	36	214	n	0.19	17	73	17	73	y	0.16	36	195	36	195	y	0.09	9	90	9	90	n	0.16	24	127	24	127	y	0.14	40	251	40	251	n	0.17	26	130	26	130	y	0.16	31	166	31	166	y	ENSMUSG00000037622.15	Wdtc1	chr4	protein_coding	WD and tetratricopeptide repeats 1
novel_NIR_13333	chr4	133051285	133066808	-	133051285	133054454	A5SS&ES	ENSMUST00000140976.2	novel	1.00	8	0	8	0	y	1.00	10	0	10	0	y	1.00	5	0	5	0	y	0.92	12	1	12	1	y	0.92	12	1	12	1	y	1.00	1	0	1	0	n	0.86	6	1	6	1	y	1.00	5	0	5	0	y	1.00	4	0	4	0	y	1.00	5	0	5	0	y	1.00	4	0	4	0	y	1.00	7	0	7	0	y	ENSMUSG00000037622.15	Wdtc1	chr4	protein_coding	WD and tetratricopeptide repeats 1
novel_NIR_13334	chr4	133051285	133066808	-	133051285	133066307	5pMXE	ENSMUST00000043305.14	novel	0.14	8	51	8	51	n	0.22	10	36	10	36	y	0.09	5	51	5	51	n	0.14	12	72	12	72	n	0.13	12	80	12	80	n	0.04	1	22	1	22	n	0.06	6	103	6	103	n	0.10	5	45	5	45	n	0.06	4	65	4	65	n	0.06	5	76	5	76	n	0.06	4	59	4	59	n	0.08	7	85	7	85	n	ENSMUSG00000037622.15	Wdtc1	chr4	protein_coding	WD and tetratricopeptide repeats 1
novel_NIR_13335	chr4	133051285	133066808	-	133051285	133080097	A5SS	ENSMUST00000135929.8	novel	1.00	8	0	8	0	y	1.00	10	0	10	0	y	1.00	5	0	5	0	y	1.00	12	0	12	0	y	1.00	12	0	12	0	y	1.00	1	0	1	0	n	1.00	6	0	6	0	y	1.00	5	0	5	0	y	1.00	4	0	4	0	y	1.00	5	0	5	0	y	1.00	4	0	4	0	y	1.00	7	0	7	0	y	ENSMUSG00000037622.15	Wdtc1	chr4	protein_coding	WD and tetratricopeptide repeats 1
novel_NIR_13336	chr4	133148280	133148813	+	133148198	133148813	A5SS	ENSMUST00000030669.8	novel	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	16	0	16	n	0.00	0	17	0	17	n	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	17	0	17	n	0.00	0	15	0	15	n	0.17	2	10	2	10	y	ENSMUSG00000028854.10	Slc9a1	chr4	protein_coding	solute carrier family 9 (sodium/hydrogen exchanger), member 1
novel_NIR_13337	chr4	133246363	133257142	+	133246363	133255051	3pMXE	ENSMUST00000149807.2	novel	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.19	3	13	3	13	y	0.00	0	2	0	2	n	0.14	1	6	1	6	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	ENSMUSG00000037600.17	Kdf1	chr4	protein_coding	keratinocyte differentiation factor 1
novel_NIR_13338	chr4	133246363	133257142	+	133246363;133256320	133255253;133257142	ES	ENSMUST00000042919.16	novel	0.00	0	13.0	0	7;19	n	0.00	0	10.5	0	6;15	n	0.21	3	11.0	3	3;19	y	0.00	0	13.5	0	10;17	n	0.07	1	14.0	1	3;25	n	0.00	0	9.5	0	1;18	n	0.07	1	14.0	1	7;21	n	0.00	0	11.0	0	6;16	n	0.00	0	11.5	0	7;16	n	0.00	0	14.0	0	3;25	n	0.00	0	11.0	0	2;20	n	0.00	0	6.5	0	2;11	n	ENSMUSG00000037600.17	Kdf1	chr4	protein_coding	keratinocyte differentiation factor 1
novel_NIR_13339	chr4	133390102	133399630	-	133390102;133397171	133397049;133399630	ES	ENSMUST00000067902.13	novel	0.00	0	7.0	0	2;12	n	0.00	0	10.0	0	10;10	n	0.27	2	5.5	2	1;10	y	0.00	0	5.0	0	2;8	n	0.20	3	12.0	3	2;22	y	0.00	0	4.0	0	0;8	n	0.10	1	9.0	1	8;10	n	0.11	1	8.5	1	4;13	n	0.00	0	4.5	0	2;7	n	0.09	1	10.0	1	8;12	n	0.00	0	3.0	0	1;5	n	0.12	1	7.5	1	6;9	n	ENSMUSG00000043257.16	Pigv	chr4	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class V
novel_NIR_13340	chr4	133393090	133395937	-	133393090	133397049	A5SS	ENSMUST00000062118.11	novel	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.43	3	4	3	4	y	0.17	1	5	1	5	n	0.06	1	17	1	17	n	0.25	2	6	2	6	y	0.25	3	9	3	9	y	0.22	2	7	2	7	y	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.14	1	6	1	6	n	ENSMUSG00000043257.16	Pigv	chr4	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class V
novel_NIR_13341	chr4	133397171	133400075	-	133397171	133399630	5pMXE	ENSMUST00000062118.11	novel	0.08	1	12	1	12	n	0.00	0	10	0	10	n	0.09	1	10	1	10	n	0.11	1	8	1	8	n	0.15	4	22	4	22	y	0.11	1	8	1	8	n	0.09	1	10	1	10	n	0.07	1	13	1	13	n	0.22	2	7	2	7	y	0.29	5	12	5	12	y	0.00	0	5	0	5	n	0.00	0	9	0	9	n	ENSMUSG00000043257.16	Pigv	chr4	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class V
novel_NIR_13342	chr4	133707515	133710111	-	133698564	133710111	A3SS	ENSMUST00000130464.8	novel	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000012117.14	Dhdds	chr4	protein_coding	dehydrodolichyl diphosphate synthase
novel_NIR_13343	chr4	133721615	133722403	-	133721615	133723917	A5SS	ENSMUST00000146241.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000012117.14	Dhdds	chr4	protein_coding	dehydrodolichyl diphosphate synthase
novel_NIR_13344	chr4	133727704	133728131	-	133727704	133728178	A5SS	ENSMUST00000105889.4	novel	0.00	0	6	0	6	n	0.50	2	2	2	2	y	0.12	2	15	2	15	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000012117.14	Dhdds	chr4	protein_coding	dehydrodolichyl diphosphate synthase
novel_NIR_13345	chr4	133793265;133794284	133794222;133799741	+	133793265	133799741	cassetteExon	ENSMUST00000227683.2	novel	-	-	-	-	-	-	0.00	0.0	3	0;0	3	n	-	-	-	-	-	-	0.00	0.0	4	0;0	4	n	0.00	0.0	1	0;0	1	n	-	-	-	-	-	-	0.00	0.0	1	0;0	1	n	0.00	0.0	2	0;0	2	n	0.00	0.0	1	0;0	1	n	0.67	2.0	1	2;2	1	y	0.00	0.0	2	0;0	2	n	-	-	-	-	-	-	ENSMUSG00000012123.18	Crybg2	chr4	protein_coding	crystallin beta-gamma domain containing 2
novel_NIR_13346	chr4	133794284	133799741	+	133790683	133799741	A5SS	ENSMUST00000219402.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000012123.18	Crybg2	chr4	protein_coding	crystallin beta-gamma domain containing 2
novel_NIR_13347	chr4	133794284	133799741	+	133795847	133799741	5pMXE	ENSMUST00000121391.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000012123.18	Crybg2	chr4	protein_coding	crystallin beta-gamma domain containing 2
novel_NIR_13348	chr4	133859768	133864882	-	133859768	133859902	5pMXE	ENSMUST00000138144.8	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000037443.14	Cep85	chr4	protein_coding	centrosomal protein 85
novel_NIR_13349	chr4	133883682	133887234	-	133883682	133884122	5pMXE	ENSMUST00000145531.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037443.14	Cep85	chr4	protein_coding	centrosomal protein 85
novel_NIR_13350	chr4	133883682	133887234	-	133883682	133891939	A5SS	ENSMUST00000137388.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037443.14	Cep85	chr4	protein_coding	centrosomal protein 85
novel_NIR_13351	chr4	133883682	133887234	-	133883682	133894600	A5SS	ENSMUST00000040271.12	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.20	2	8	2	8	y	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	ENSMUSG00000037443.14	Cep85	chr4	protein_coding	centrosomal protein 85
novel_NIR_13352	chr4	133883682	133887539	-	133883682	133884122	5pMXE	ENSMUST00000145531.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000037443.14	Cep85	chr4	protein_coding	centrosomal protein 85
novel_NIR_13353	chr4	133883682	133887539	-	133883682	133891939	A5SS	ENSMUST00000137388.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000037443.14	Cep85	chr4	protein_coding	centrosomal protein 85
novel_NIR_13354	chr4	133883682	133887539	-	133883682	133894600	A5SS	ENSMUST00000040271.12	novel	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.18	2	9	2	9	y	ENSMUSG00000037443.14	Cep85	chr4	protein_coding	centrosomal protein 85
novel_NIR_13355	chr4	134132413	134138090	+	134124897	134138090	A5SS	ENSMUST00000148863.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037366.15	Pafah2	chr4	protein_coding	platelet-activating factor acetylhydrolase 2
novel_NIR_13356	chr4	134132413	134138090	+	134130415	134138090	A5SS	ENSMUST00000131337.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000037366.15	Pafah2	chr4	protein_coding	platelet-activating factor acetylhydrolase 2
novel_NIR_13357	chr4	134133257	134138215	+	134130415	134138215	A5SS	ENSMUST00000145626.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000037366.15	Pafah2	chr4	protein_coding	platelet-activating factor acetylhydrolase 2
novel_NIR_13358	chr4	134133257	134138215	+	134131554	134138215	A5SS	ENSMUST00000140888.8	novel	0.75	3	1	3	1	y	0.00	0	2	0	2	n	0.43	3	4	3	4	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000037366.15	Pafah2	chr4	protein_coding	platelet-activating factor acetylhydrolase 2
novel_NIR_13359	chr4	134225434	134227911	+	134224347	134227911	A5SS	ENSMUST00000136171.8	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.25	2	6	2	6	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000037348.16	Paqr7	chr4	protein_coding	progestin and adipoQ receptor family member VII
novel_NIR_13360	chr4	134235149	134248783	+	134238480	134248783	5pMXE	ENSMUST00000105866.3	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000078521.3	Aunip	chr4	protein_coding	aurora kinase A and ninein interacting protein
novel_NIR_13361	chr4	134260063	134262500	-	134260063	134262216	5pMXE	ENSMUST00000154769.8	novel	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.11	1	8	1	8	n	0.12	1	7	1	7	n	0.11	1	8	1	8	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.00	0	4	0	4	n	0.29	2	5	2	5	y	0.44	4	5	4	5	y	0.50	2	2	2	2	y	0.43	3	4	3	4	y	ENSMUSG00000046671.19	Mtfr1l	chr4	protein_coding	mitochondrial fission regulator 1-like
novel_NIR_13362	chr4	134260063	134262500	-	134260063	134262557	A5SS	ENSMUST00000131613.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	ENSMUSG00000046671.19	Mtfr1l	chr4	protein_coding	mitochondrial fission regulator 1-like
novel_NIR_13363	chr4	134560632	134580349	-	134565301	134580349	3pMXE	ENSMUST00000136113.2	novel	0.00	0	34	0	34	n	0.12	3	21	3	21	n	0.00	0	46	0	46	n	0.00	0	55	0	55	n	0.00	0	45	0	45	n	0.00	0	23	0	23	n	0.03	1	38	1	38	n	0.00	0	24	0	24	n	0.00	0	22	0	22	n	0.00	0	55	0	55	n	0.00	0	40	0	40	n	0.15	7	41	7	41	y	ENSMUSG00000028826.15	Maco1	chr4	protein_coding	macoilin 1
novel_NIR_13364	chr4	134563760	134564251	-	134563760	134564078	A5SS	ENSMUST00000148595.2	novel	0.00	0	5	0	5	n	0.33	2	4	2	4	y	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.12	1	7	1	7	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000028826.15	Maco1	chr4	protein_coding	macoilin 1
novel_NIR_13365	chr4	134652743	134653337	+	134652743	134653088	A3SS&ES	ENSMUST00000154837.8	novel	0.12	2	15	2	15	n	0.12	3	22	3	22	n	0.17	5	25	5	25	y	0.17	6	29	6	29	y	0.29	15	36	15	36	y	0.00	0	9	0	9	n	0.33	14	29	14	29	y	0.00	0	16	0	16	n	0.17	4	19	4	19	y	0.33	8	16	8	16	y	0.14	6	36	6	36	n	0.21	8	30	8	30	y	ENSMUSG00000037266.19	Rsrp1	chr4	protein_coding	arginine/serine rich protein 1
novel_NIR_13366	chr4	134652743	134653337	+	134652743;134653132	134653088;134653337	ES	ENSMUST00000145364.8	novel	0.18	2	9.0	2	15;3	y	0.18	3	14.0	3	22;6	y	0.25	5	15.0	5	25;5	y	0.27	6	16.0	6	29;3	y	0.41	15	21.5	15	36;7	y	0.00	0	4.5	0	9;0	n	0.46	14	16.5	14	29;4	y	0.00	0	10.0	0	16;4	n	0.28	4	10.5	4	19;2	y	0.46	8	9.5	8	16;3	y	0.21	6	22.5	6	36;9	y	0.30	8	19.0	8	30;8	y	ENSMUSG00000037266.19	Rsrp1	chr4	protein_coding	arginine/serine rich protein 1
novel_NIR_13367	chr4	135052591	135056315	-	135052591	135054403	A5SS&ES	ENSMUST00000105861.8	novel	0.00	0	21	0	21	n	0.00	0	15	0	15	n	0.00	0	22	0	22	n	0.00	0	12	0	12	n	0.00	0	28	0	28	n	0.00	0	11	0	11	n	0.15	2	11	2	11	y	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.04	1	24	1	24	n	0.00	0	28	0	28	n	0.00	0	13	0	13	n	ENSMUSG00000028809.17	Srrm1	chr4	protein_coding	serine/arginine repetitive matrix 1
novel_NIR_13368	chr4	135065386	135067814	-	135065897	135067814	A3SS&ES	ENSMUST00000131301.2	novel	0.00	0	2	0	2	n	0.75	3	1	3	1	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000028809.17	Srrm1	chr4	protein_coding	serine/arginine repetitive matrix 1
novel_NIR_13369	chr4	135071980	135073627	-	135071980	135072507	A5SS&ES	ENSMUST00000136409.2	novel	1.00	4	0	4	0	y	1.00	6	0	6	0	y	1.00	5	0	5	0	y	1.00	8	0	8	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	9	0	9	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	ENSMUSG00000028809.17	Srrm1	chr4	protein_coding	serine/arginine repetitive matrix 1
novel_NIR_13370	chr4	135071980	135073627	-	135071980	135074046	A5SS	ENSMUST00000105861.8	novel	0.11	4	33	4	33	n	0.18	6	27	6	27	y	0.07	5	63	5	63	n	0.14	8	49	8	49	n	0.06	4	59	4	59	n	0.05	1	20	1	20	n	0.13	9	58	9	58	n	0.07	2	25	2	25	n	0.00	0	43	0	43	n	0.07	3	41	3	41	n	0.03	1	32	1	32	n	0.04	3	74	3	74	n	ENSMUSG00000028809.17	Srrm1	chr4	protein_coding	serine/arginine repetitive matrix 1
novel_NIR_13371	chr4	135515049	135515206	+	135514831	135515206	A5SS	ENSMUST00000105854.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037139.16	Myom3	chr4	protein_coding	myomesin family, member 3
novel_NIR_13372	chr4	135585782	135589067	+	135585782	135586153	A3SS&ES	ENSMUST00000030438.15	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.27	3	8	3	8	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.25	1	3	1	3	n	0.20	1	4	1	4	n	ENSMUSG00000028676.18	Srsf10	chr4	protein_coding	serine and arginine-rich splicing factor 10
novel_NIR_13373	chr4	135586512	135589082	+	135586512	135589111	A3SS	ENSMUST00000030438.15	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000028676.18	Srsf10	chr4	protein_coding	serine and arginine-rich splicing factor 10
novel_NIR_13374	chr4	135590513	135594437	+	135590513	135590837	3pMXE	ENSMUST00000129198.2	novel	0.05	1	18	1	18	n	0.00	0	18	0	18	n	0.09	3	29	3	29	n	0.00	0	23	0	23	n	0.04	1	26	1	26	n	0.00	0	18	0	18	n	0.00	0	22	0	22	n	0.19	3	13	3	13	y	0.00	0	7	0	7	n	0.03	1	30	1	30	n	0.10	1	9	1	9	n	0.00	0	20	0	20	n	ENSMUSG00000028676.18	Srsf10	chr4	protein_coding	serine and arginine-rich splicing factor 10
novel_NIR_13375	chr4	135600406	135600588	-	135600410	135600588	A3SS	ENSMUST00000142585.2	novel	0.00	0	10	0	10	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	ENSMUSG00000028675.13	Pnrc2	chr4	protein_coding	proline-rich nuclear receptor coactivator 2
novel_NIR_13376	chr4	135600410	135600575	-	135600410	135600588	A5SS	ENSMUST00000142585.2	novel	0.09	1	10	1	10	n	1.00	5	0	5	0	y	0.00	0	5	0	5	n	0.25	2	6	2	6	y	0.23	3	10	3	10	y	0.00	0	6	0	6	n	0.15	2	11	2	11	y	0.71	5	2	5	2	y	0.67	4	2	4	2	y	0.11	1	8	1	8	n	0.12	1	7	1	7	n	0.36	4	7	4	7	y	ENSMUSG00000028675.13	Pnrc2	chr4	protein_coding	proline-rich nuclear receptor coactivator 2
novel_NIR_13377	chr4	135666516	135677861	+	135676158	135677861	5pMXE	ENSMUST00000151879.2	novel	0.00	0	15	0	15	n	0.11	1	8	1	8	n	0.55	6	5	6	5	y	0.23	5	17	5	17	y	0.46	18	21	18	21	y	0.00	0	11	0	11	n	0.45	14	17	14	17	y	0.38	8	13	8	13	y	0.47	8	9	8	9	y	0.40	12	18	12	18	y	0.50	14	14	14	14	y	0.57	16	12	16	12	y	ENSMUSG00000028672.14	Hmgcl	chr4	protein_coding	3-hydroxy-3-methylglutaryl-Coenzyme A lyase
novel_NIR_13378	chr4	135674093	135677861	+	135676158	135677861	5pMXE	ENSMUST00000151879.2	novel	0.00	0	15	0	15	n	0.00	0	8	0	8	n	0.38	3	5	3	5	y	0.00	0	17	0	17	n	0.00	0	21	0	21	n	0.00	0	11	0	11	n	0.00	0	17	0	17	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	18	0	18	n	0.00	0	14	0	14	n	0.00	0	12	0	12	n	ENSMUSG00000028672.14	Hmgcl	chr4	protein_coding	3-hydroxy-3-methylglutaryl-Coenzyme A lyase
novel_NIR_13379	chr4	135675911	135677861	+	135676158	135677861	A5SS	ENSMUST00000151879.2	novel	0.00	0	15	0	15	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	17	0	17	n	0.00	0	21	0	21	n	0.00	0	11	0	11	n	0.00	0	17	0	17	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.31	8	18	8	18	y	0.26	5	14	5	14	y	0.00	0	12	0	12	n	ENSMUSG00000028672.14	Hmgcl	chr4	protein_coding	3-hydroxy-3-methylglutaryl-Coenzyme A lyase
novel_NIR_13380	chr4	135676203	135677861	+	135676158	135677861	A5SS	ENSMUST00000151879.2	novel	0.17	3	15	3	15	y	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	17	0	17	n	0.00	0	21	0	21	n	0.00	0	11	0	11	n	0.00	0	17	0	17	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	18	0	18	n	0.00	0	14	0	14	n	0.00	0	12	0	12	n	ENSMUSG00000028672.14	Hmgcl	chr4	protein_coding	3-hydroxy-3-methylglutaryl-Coenzyme A lyase
novel_NIR_13381	chr4	135679789	135680691	+	135679789	135680600	A3SS	ENSMUST00000134135.8	novel	0.20	2	8	2	8	y	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.18	2	9	2	9	y	0.08	1	11	1	11	n	0.00	0	6	0	6	n	0.19	3	13	3	13	y	0.14	2	12	2	12	n	0.00	0	11	0	11	n	0.08	1	11	1	11	n	0.00	0	10	0	10	n	0.11	1	8	1	8	n	ENSMUSG00000028672.14	Hmgcl	chr4	protein_coding	3-hydroxy-3-methylglutaryl-Coenzyme A lyase
novel_NIR_13382	chr4	135686033	135687288	+	135687139	135687288	5pMXE	ENSMUST00000148613.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.71	5	2	5	2	y	0.00	0	2	0	2	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.25	2	6	2	6	y	0.00	0	1	0	1	n	0.75	3	1	3	1	y	ENSMUSG00000028672.14	Hmgcl	chr4	protein_coding	3-hydroxy-3-methylglutaryl-Coenzyme A lyase
novel_NIR_13383	chr4	135686505	135687288	+	135687139	135687288	5pMXE	ENSMUST00000148613.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.86	12	2	12	2	y	0.33	1	2	1	2	n	0.00	0	1	0	1	n	1.00	5	0	5	0	y	0.33	1	2	1	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.33	3	6	3	6	y	0.50	1	1	1	1	n	0.00	0	1	0	1	n	ENSMUSG00000028672.14	Hmgcl	chr4	protein_coding	3-hydroxy-3-methylglutaryl-Coenzyme A lyase
novel_NIR_13384	chr4	135691099	135692642	+	135691099	135692537	A3SS	ENSMUST00000149636.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.71	5	2	5	2	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.33	1	2	1	2	n	ENSMUSG00000028671.17	Gale	chr4	protein_coding	galactose-4-epimerase, UDP
novel_NIR_13385	chr4	135698276	135703537	-	135698276	135699170	5pMXE	ENSMUST00000105852.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	ENSMUSG00000028670.15	Lypla2	chr4	protein_coding	lysophospholipase 2
novel_NIR_13386	chr4	135780028	135780398	-	135780028	135780281	A5SS	ENSMUST00000155873.3	novel	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.17	1	5	1	5	n	1.00	1	0	1	0	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.20	2	8	2	8	y	0.00	0	3	0	3	n	0.50	1	1	1	1	n	ENSMUSG00000059291.16	Rpl11	chr4	protein_coding	ribosomal protein L11
novel_NIR_13387	chr4	135780028	135780466	-	135780028	135780281	5pMXE	ENSMUST00000155873.3	novel	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	8	0	8	n	1.00	1	0	1	0	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	6	0	6	n	1.00	3	0	3	0	y	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000059291.16	Rpl11	chr4	protein_coding	ribosomal protein L11
novel_NIR_13388	chr4	135961725	135961859	+	135961725	135961895	A3SS	ENSMUST00000047526.8	novel	0.11	2	16	2	16	n	0.00	0	19	0	19	n	0.00	0	37	0	37	n	0.00	0	20	0	20	n	0.12	3	22	3	22	n	0.00	0	15	0	15	n	0.06	1	15	1	15	n	0.00	0	20	0	20	n	0.08	1	11	1	11	n	0.21	7	26	7	26	y	0.16	3	16	3	16	y	0.12	3	21	3	21	n	ENSMUSG00000036995.8	Asap3	chr4	protein_coding	ArfGAP with SH3 domain, ankyrin repeat and PH domain 3
novel_NIR_13389	chr4	135963755	135965487	+	135963755;135964095	135964008;135965487	ES	ENSMUST00000047526.8	novel	0.00	0	15.5	0	16;15	n	0.17	3	15.0	3	17;13	y	0.00	0	44.5	0	39;50	n	0.04	1	27.0	1	24;30	n	0.03	1	32.0	1	24;40	n	0.00	0	19.0	0	23;15	n	0.00	0	26.5	0	26;27	n	0.00	0	19.5	0	15;24	n	0.00	0	10.0	0	8;12	n	0.06	2	29.0	2	31;27	n	0.00	0	19.5	0	19;20	n	0.00	0	25.5	0	28;23	n	ENSMUSG00000036995.8	Asap3	chr4	protein_coding	ArfGAP with SH3 domain, ankyrin repeat and PH domain 3
novel_NIR_13390	chr4	136197161	136267667	+	136197161	136248652	3pMXE	ENSMUST00000142248.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.29	2	5	2	5	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	ENSMUSG00000001089.15	Luzp1	chr4	protein_coding	leucine zipper protein 1
novel_NIR_13391	chr4	136197161	136267667	+	136197161;136248754	136248652;136267667	ES	ENSMUST00000105849.9	novel	-	-	-	-	-	-	0.00	0	3.0	0	2;4	n	0.00	0	5.5	0	7;4	n	0.00	0	1.0	0	2;0	n	0.00	0	4.5	0	3;6	n	0.00	0	1.5	0	3;0	n	0.33	2	4.0	2	5;3	y	0.00	0	1.0	0	2;0	n	0.00	0	3.5	0	4;3	n	0.00	0	7.0	0	9;5	n	0.00	0	3.0	0	2;4	n	0.25	1	3.0	1	0;6	n	ENSMUSG00000001089.15	Luzp1	chr4	protein_coding	leucine zipper protein 1
novel_NIR_13392	chr4	136197161	136267667	+	136197197	136267667	A5SS	ENSMUST00000129230.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000001089.15	Luzp1	chr4	protein_coding	leucine zipper protein 1
novel_NIR_13393	chr4	136197161	136267667	+	136248754	136267667	5pMXE	ENSMUST00000063021.7	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	ENSMUSG00000001089.15	Luzp1	chr4	protein_coding	leucine zipper protein 1
novel_NIR_13394	chr4	136718973	136721367	-	136718973	136721656	A5SS	ENSMUST00000049583.8	novel	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.50	3	3	3	3	y	ENSMUSG00000060862.11	Zbtb40	chr4	protein_coding	zinc finger and BTB domain containing 40
novel_NIR_13395	chr4	136721454	136721656	-	136718973	136721656	A3SS	ENSMUST00000049583.8	novel	0.12	1	7	1	7	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.17	1	5	1	5	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.38	3	5	3	5	y	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	ENSMUSG00000060862.11	Zbtb40	chr4	protein_coding	zinc finger and BTB domain containing 40
novel_NIR_13396	chr4	136721862	136722018	-	136721862	136722562	A5SS	ENSMUST00000049583.8	novel	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.25	4	12	4	12	y	0.25	1	3	1	3	n	0.00	0	5	0	5	n	ENSMUSG00000060862.11	Zbtb40	chr4	protein_coding	zinc finger and BTB domain containing 40
novel_NIR_13397	chr4	137016660	137022791	+	137016660	137022752	A3SS	ENSMUST00000045747.5	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.29	2	5	2	5	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	ENSMUSG00000036856.5	Wnt4	chr4	protein_coding	wingless-type MMTV integration site family, member 4
novel_NIR_13398	chr4	137048499	137056024	-	137049930	137056024	3pMXE	ENSMUST00000030417.10	novel	0.00	0	4	0	4	n	0.67	10	5	10	5	y	0.27	6	16	6	16	y	0.00	0	3	0	3	n	0.64	7	4	7	4	y	0.89	8	1	8	1	y	0.23	5	17	5	17	y	0.27	4	11	4	11	y	0.38	6	10	6	10	y	0.43	12	16	12	16	y	0.00	0	18	0	18	n	0.38	8	13	8	13	y	ENSMUSG00000006699.18	Cdc42	chr4	protein_coding	cell division cycle 42
novel_NIR_13399	chr4	137364298	137365076	+	137362319	137365076	A5SS	ENSMUST00000141628.8	novel	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	1.00	1	0	1	0	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.25	2	6	2	6	y	ENSMUSG00000043411.16	Usp48	chr4	protein_coding	ubiquitin specific peptidase 48
novel_NIR_13400	chr4	137364298	137365076	+	137364298	137365071	A3SS	ENSMUST00000055131.13	novel	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.09	1	10	1	10	n	0.25	1	3	1	3	n	0.00	0	11	0	11	n	0.11	1	8	1	8	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.17	2	10	2	10	y	ENSMUSG00000043411.16	Usp48	chr4	protein_coding	ubiquitin specific peptidase 48
novel_NIR_13401	chr4	137365573	137371654	+	137360776	137371654	A5SS	ENSMUST00000141426.8	novel	1.00	3	0	3	0	y	1.00	2	0	2	0	y	0.89	8	1	8	1	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000043411.16	Usp48	chr4	protein_coding	ubiquitin specific peptidase 48
novel_NIR_13402	chr4	137365573	137371654	+	137362319	137371654	A5SS	ENSMUST00000152985.2	novel	0.50	3	3	3	3	y	0.40	2	3	2	3	y	0.67	8	4	8	4	y	0.00	0	1	0	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000043411.16	Usp48	chr4	protein_coding	ubiquitin specific peptidase 48
novel_NIR_13403	chr4	137483060	137496841	-	137486043	137496841	3pMXE	ENSMUST00000143757.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.57	4	3	4	3	y	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000028766.11	Alpl	chr4	protein_coding	alkaline phosphatase, liver/bone/kidney
novel_NIR_13404	chr4	137483060	137523553	-	137483060;137486043	137485883;137523553	ES	ENSMUST00000030551.11	novel	0.00	0	8.5	0	16;1	n	0.00	0	7.5	0	15;0	n	0.00	0	23.5	0	47;0	n	0.00	0	16.0	0	32;0	n	0.00	0	12.5	0	23;2	n	0.00	0	13.5	0	27;0	n	0.00	0	9.0	0	15;3	n	0.00	0	13.0	0	24;2	n	0.00	0	8.0	0	15;1	n	0.00	0	7.0	0	13;1	n	0.17	2	10.0	2	19;1	y	0.00	0	7.0	0	13;1	n	ENSMUSG00000028766.11	Alpl	chr4	protein_coding	alkaline phosphatase, liver/bone/kidney
novel_NIR_13405	chr4	137589692	137629994	+	137589692	137632381	A3SS	ENSMUST00000102518.10	novel	0.13	2	13	2	13	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	32	0	32	n	0.09	3	32	3	32	n	0.00	0	7	0	7	n	0.08	2	22	2	22	n	0.25	3	9	3	9	y	0.00	0	17	0	17	n	0.05	1	19	1	19	n	0.00	0	7	0	7	n	0.00	0	23	0	23	n	ENSMUSG00000057530.15	Ece1	chr4	protein_coding	endothelin converting enzyme 1
novel_NIR_13406	chr4	137636442	137641079	+	137640940	137641079	5pMXE	ENSMUST00000151110.4	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000057530.15	Ece1	chr4	protein_coding	endothelin converting enzyme 1
novel_NIR_13407	chr4	137772729	137810225	+	137772729	137785260	A3SS&ES	ENSMUST00000139759.8	novel	0.00	0	13	0	13	n	0.40	2	3	2	3	y	0.00	0	24	0	24	n	0.00	0	18	0	18	n	0.11	2	16	2	16	n	0.06	1	15	1	15	n	0.05	1	21	1	21	n	0.00	0	14	0	14	n	0.11	1	8	1	8	n	0.00	0	11	0	11	n	0.20	2	8	2	8	y	0.00	0	6	0	6	n	ENSMUSG00000028760.17	Eif4g3	chr4	protein_coding	eukaryotic translation initiation factor 4 gamma, 3
novel_NIR_13408	chr4	137772729	137810225	+	137772729	137810204	A3SS	ENSMUST00000058133.10	novel	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.20	2	8	2	8	y	0.09	1	10	1	10	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.33	2	4	2	4	y	0.00	0	4	0	4	n	ENSMUSG00000028760.17	Eif4g3	chr4	protein_coding	eukaryotic translation initiation factor 4 gamma, 3
novel_NIR_13409	chr4	137785388	137810225	+	137785388	137810204	A3SS	ENSMUST00000139759.8	novel	0.29	2	5	2	5	y	0.00	0	10	0	10	n	0.04	2	49	2	49	n	0.15	4	22	4	22	y	0.14	4	24	4	24	n	0.00	0	13	0	13	n	0.11	2	17	2	17	n	0.24	4	13	4	13	y	0.14	2	12	2	12	n	0.07	1	14	1	14	n	0.23	3	10	3	10	y	0.00	0	13	0	13	n	ENSMUSG00000028760.17	Eif4g3	chr4	protein_coding	eukaryotic translation initiation factor 4 gamma, 3
novel_NIR_13410	chr4	137786050	137810204	+	137772729	137810204	A5SS	ENSMUST00000058133.10	novel	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.11	1	8	1	8	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.50	3	3	3	3	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	ENSMUSG00000028760.17	Eif4g3	chr4	protein_coding	eukaryotic translation initiation factor 4 gamma, 3
novel_NIR_13411	chr4	137786050	137810204	+	137785388	137810204	A5SS	ENSMUST00000139759.8	novel	0.29	2	5	2	5	n	0.00	0	10	0	10	n	0.00	0	49	0	49	n	0.00	0	22	0	22	n	0.04	1	24	1	24	n	0.00	0	13	0	13	n	0.00	0	17	0	17	n	0.19	3	13	3	13	y	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	ENSMUSG00000028760.17	Eif4g3	chr4	protein_coding	eukaryotic translation initiation factor 4 gamma, 3
novel_NIR_13412	chr4	137824670	137832625	+	137824670	137830626	3pMXE	ENSMUST00000155142.2	novel	0.06	1	15	1	15	n	0.00	0	10	0	10	n	0.00	0	51	0	51	n	0.00	0	21	0	21	n	0.00	0	39	0	39	n	0.03	1	31	1	31	n	0.00	0	34	0	34	n	0.00	0	25	0	25	n	0.00	0	9	0	9	n	0.00	0	33	0	33	n	0.15	3	17	3	17	y	0.00	0	22	0	22	n	ENSMUSG00000028760.17	Eif4g3	chr4	protein_coding	eukaryotic translation initiation factor 4 gamma, 3
novel_NIR_13413	chr4	137824670	137832625	+	137824670;137830723	137830626;137832625	ES	ENSMUST00000139759.8	novel	0.05	1	18.0	1	15;21	n	0.00	0	11.5	0	10;13	n	0.00	0	55.0	0	51;59	n	0.00	0	28.0	0	21;35	n	0.00	0	40.5	0	39;42	n	0.03	1	28.0	1	31;25	n	0.00	0	35.5	0	34;37	n	0.00	0	28.0	0	25;31	n	0.00	0	14.5	0	9;20	n	0.00	0	30.5	0	33;28	n	0.15	3	17.0	3	17;17	y	0.00	0	28.0	0	22;34	n	ENSMUSG00000028760.17	Eif4g3	chr4	protein_coding	eukaryotic translation initiation factor 4 gamma, 3
novel_NIR_13414	chr4	137832747	137853121	+	137832747	137842464	3pMXE	ENSMUST00000058133.10	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.50	3	3	3	3	y	0.00	0	2	0	2	n	0.83	5	1	5	1	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.67	2	1	2	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	ENSMUSG00000028760.17	Eif4g3	chr4	protein_coding	eukaryotic translation initiation factor 4 gamma, 3
novel_NIR_13415	chr4	137944051	137947093	+	137944051	137946713	A3SS&ES	ENSMUST00000142420.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000028759.14	Hp1bp3	chr4	protein_coding	heterochromatin protein 1, binding protein 3
novel_NIR_13416	chr4	137944051	137947093	+	137944051	137949400	A3SS	ENSMUST00000097836.10	novel	0.29	2	5	2	5	y	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.00	0	23	0	23	n	0.10	1	9	1	9	n	0.00	0	13	0	13	n	0.00	0	15	0	15	n	0.00	0	16	0	16	n	0.04	1	22	1	22	n	0.00	0	10	0	10	n	0.09	2	20	2	20	n	ENSMUSG00000028759.14	Hp1bp3	chr4	protein_coding	heterochromatin protein 1, binding protein 3
novel_NIR_13417	chr4	137949029	137949407	+	137949029	137949400	A3SS	ENSMUST00000154581.2	novel	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.43	3	4	3	4	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000028759.14	Hp1bp3	chr4	protein_coding	heterochromatin protein 1, binding protein 3
novel_NIR_13418	chr4	137949499	137950843	+	137949499	137950840	A3SS	ENSMUST00000137865.8	novel	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	16	0	16	n	0.00	0	22	0	22	n	0.00	0	10	0	10	n	0.00	0	22	0	22	n	0.00	0	16	0	16	n	0.00	0	15	0	15	n	0.16	5	26	5	26	y	0.00	0	6	0	6	n	0.00	0	15	0	15	n	ENSMUSG00000028759.14	Hp1bp3	chr4	protein_coding	heterochromatin protein 1, binding protein 3
novel_NIR_13419	chr4	138070875	138095101	-	138070875;138078606	138078495;138095101	ES	ENSMUST00000030535.4	novel	0.00	0	26.0	0	24;28	n	0.19	10	42.0	10	42;42	y	0.13	9	61.5	9	68;55	n	0.00	0	37.5	0	35;40	n	0.08	6	65.0	6	70;60	n	0.14	5	32.0	5	36;28	n	0.13	11	74.0	11	90;58	n	0.02	1	46.0	1	50;42	n	0.03	1	36.0	1	39;33	n	0.05	3	61.0	3	69;53	n	0.07	4	53.0	4	49;57	n	0.05	2	36.0	2	37;35	n	ENSMUSG00000028755.4	Cda	chr4	protein_coding	cytidine deaminase
novel_NIR_13420	chr4	138636941	138640935	-	138636941	138640921	A5SS	ENSMUST00000097830.4	novel	0.00	0	11	0	11	n	0.13	2	13	2	13	n	0.00	0	26	0	26	n	0.23	3	10	3	10	y	0.20	4	16	4	16	y	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.08	1	12	1	12	n	0.05	1	18	1	18	n	0.00	0	14	0	14	n	0.00	0	17	0	17	n	ENSMUSG00000041161.9	Otud3	chr4	protein_coding	OTU domain containing 3
novel_NIR_13421	chr4	138704633	138709387	+	138704633	138710932	A3SS	ENSMUST00000123636.8	novel	0.05	1	18	1	18	n	0.00	0	17	0	17	n	0.03	1	38	1	38	n	0.11	4	33	4	33	n	0.06	2	34	2	34	n	0.17	3	15	3	15	y	0.08	2	24	2	24	n	0.00	0	19	0	19	n	0.10	3	28	3	28	n	0.11	5	39	5	39	n	0.04	1	27	1	27	n	0.10	4	37	4	37	n	ENSMUSG00000041143.17	Tmco4	chr4	protein_coding	transmembrane and coiled-coil domains 4
novel_NIR_13422	chr4	138709539	138710932	+	138700300	138710932	A5SS	ENSMUST00000043042.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	1.00	5	0	5	0	y	1.00	5	0	5	0	y	0.00	0	2	0	2	n	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000041143.17	Tmco4	chr4	protein_coding	transmembrane and coiled-coil domains 4
novel_NIR_13423	chr4	138709539	138710932	+	138700598	138710932	A5SS	ENSMUST00000124835.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000041143.17	Tmco4	chr4	protein_coding	transmembrane and coiled-coil domains 4
novel_NIR_13424	chr4	138833214	138858002	-	138833214	138838528	5pMXE	ENSMUST00000123488.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000050608.12	Micos10	chr4	protein_coding	mitochondrial contact site and cristae organizing system subunit 10
novel_NIR_13425	chr4	138833214	138858002	-	138833214	138858099	A5SS	ENSMUST00000154642.2	novel	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.23	3	10	3	10	y	0.10	2	19	2	19	n	0.10	1	9	1	9	n	0.12	3	21	3	21	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.25	3	9	3	9	y	0.00	0	16	0	16	n	0.15	2	11	2	11	y	ENSMUSG00000050608.12	Micos10	chr4	protein_coding	mitochondrial contact site and cristae organizing system subunit 10
novel_NIR_13426	chr4	138833214	138858012	-	138833214	138838528	5pMXE	ENSMUST00000123488.8	novel	1.00	3	0	3	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000050608.12	Micos10	chr4	protein_coding	mitochondrial contact site and cristae organizing system subunit 10
novel_NIR_13427	chr4	138833214	138858012	-	138833214	138858099	A5SS	ENSMUST00000154642.2	novel	0.17	3	15	3	15	y	0.23	3	10	3	10	y	0.00	0	5	0	5	n	0.23	3	10	3	10	y	0.00	0	19	0	19	n	0.10	1	9	1	9	n	0.12	3	21	3	21	n	0.29	2	5	2	5	y	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.06	1	16	1	16	n	0.00	0	11	0	11	n	ENSMUSG00000050608.12	Micos10	chr4	protein_coding	mitochondrial contact site and cristae organizing system subunit 10
novel_NIR_13428	chr4	139021903	139026153	-	139021903	139023085	A5SS&ES	ENSMUST00000139840.9	novel	0.11	1	8	1	8	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	11	0	11	n	0.38	5	8	5	8	y	0.11	1	8	1	8	n	ENSMUSG00000028744.16	Slc66a1	chr4	protein_coding	solute carrier family 66 member 1
novel_NIR_13429	chr4	139024350	139025957	-	139023244	139025957	A3SS	ENSMUST00000139840.9	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000028744.16	Slc66a1	chr4	protein_coding	solute carrier family 66 member 1
novel_NIR_13430	chr4	139033934	139035040	-	139033919	139035040	A3SS	ENSMUST00000172747.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028744.16	Slc66a1	chr4	protein_coding	solute carrier family 66 member 1
novel_NIR_13431	chr4	139035161	139037528	-	139035161	139037940	A5SS	ENSMUST00000139840.9	novel	0.00	0	26	0	26	n	0.00	0	24	0	24	n	0.00	0	59	0	59	n	0.00	0	36	0	36	n	0.02	1	44	1	44	n	0.00	0	14	0	14	n	0.00	0	24	0	24	n	0.00	0	19	0	19	n	0.17	2	10	2	10	y	0.00	0	31	0	31	n	0.03	1	31	1	31	n	0.00	0	44	0	44	n	ENSMUSG00000028744.16	Slc66a1	chr4	protein_coding	solute carrier family 66 member 1
novel_NIR_13432	chr4	139162495	139163436	+	139162495	139163260	A3SS&ES	ENSMUST00000129779.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.38	3	5	3	5	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	ENSMUSG00000066036.15	Ubr4	chr4	protein_coding	ubiquitin protein ligase E3 component n-recognin 4
novel_NIR_13433	chr4	139342372	139343657	+	139342372	139343639	A3SS	ENSMUST00000123827.9	novel	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.08	3	35	3	35	n	0.19	4	17	4	17	y	0.00	0	26	0	26	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	31	0	31	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	ENSMUSG00000041025.16	Iffo2	chr4	protein_coding	intermediate filament family orphan 2
novel_NIR_13434	chr4	139362855	139364329	+	139362855	139362917	A3SS&ES	ENSMUST00000178644.2	novel	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	ENSMUSG00000094439.2	Gm21969	chr4	protein_coding	predicted gene 21969
novel_NIR_13435	chr4	140150486	140151903	+	140149909	140151903	A5SS	ENSMUST00000135716.3	novel	0.06	1	16	1	16	n	0.21	3	11	3	11	y	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.06	1	16	1	16	n	0.00	0	5	0	5	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.22	2	7	2	7	n	0.07	1	14	1	14	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	ENSMUSG00000086437.3	Gm13021	chr4	lncRNA	predicted gene 13021
novel_NIR_13436	chr4	140151999	140153107	+	140151999	140158848	A3SS	ENSMUST00000135716.3	novel	0.50	8	8	8	8	y	0.50	4	4	4	4	y	0.67	2	1	2	1	y	0.73	8	3	8	3	y	0.55	6	5	6	5	y	0.60	3	2	3	2	y	1.00	11	0	11	0	n	1.00	4	0	4	0	y	0.33	1	2	1	2	n	0.38	3	5	3	5	y	0.67	2	1	2	1	y	1.00	6	0	6	0	y	ENSMUSG00000086437.3	Gm13021	chr4	lncRNA	predicted gene 13021
novel_NIR_13437	chr4	140151999	140158845	+	140151999	140158848	A3SS	ENSMUST00000135716.3	novel	0.11	1	8	1	8	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.38	3	5	3	5	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000086437.3	Gm13021	chr4	lncRNA	predicted gene 13021
novel_NIR_13438	chr4	140151999	140159103	+	140151999;140158942	140158848;140159103	ES	ENSMUST00000135716.3	novel	0.00	0	8.0	0	8;8	n	0.00	0	6.5	0	4;9	n	0.00	0	0.5	0	1;0	n	0.00	0	3.0	0	3;3	n	0.00	0	8.0	0	5;11	n	0.00	0	1.0	0	2;0	n	0.53	4	3.5	4	0;7	y	0.00	0	0.5	0	0;1	n	0.00	0	2.0	0	2;2	n	0.00	0	4.5	0	5;4	n	0.00	0	5.5	0	1;10	n	0.00	0	1.5	0	0;3	n	ENSMUSG00000086437.3	Gm13021	chr4	lncRNA	predicted gene 13021
novel_NIR_13439	chr4	140155167	140158848	+	140151999	140158848	A5SS	ENSMUST00000135716.3	novel	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000086437.3	Gm13021	chr4	lncRNA	predicted gene 13021
novel_NIR_13440	chr4	140158942	140159106	+	140158942	140159103	A3SS	ENSMUST00000135716.3	novel	0.20	2	8	2	8	y	0.10	1	9	1	9	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.35	6	11	6	11	y	-	-	-	-	-	-	0.30	3	7	3	7	y	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	ENSMUSG00000086437.3	Gm13021	chr4	lncRNA	predicted gene 13021
novel_NIR_13441	chr4	140244179	140248043	-	140244179	140244999	A5SS&ES	ENSMUST00000138493.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040964.17	Arhgef10l	chr4	protein_coding	Rho guanine nucleotide exchange factor (GEF) 10-like
novel_NIR_13442	chr4	140326152	140337842	-	140321548	140337842	A3SS	ENSMUST00000105799.8	novel	0.50	11	11	11	11	y	0.38	8	13	8	13	y	0.33	17	34	17	34	y	0.30	10	23	10	23	y	0.30	21	48	21	48	y	0.49	17	18	17	18	y	0.45	25	31	25	31	y	0.39	15	23	15	23	y	0.34	10	19	10	19	y	0.17	8	40	8	40	y	0.50	15	15	15	15	y	0.31	13	29	13	29	y	ENSMUSG00000040964.17	Arhgef10l	chr4	protein_coding	Rho guanine nucleotide exchange factor (GEF) 10-like
novel_NIR_13443	chr4	140344303	140347801	-	140344303	140375945	A5SS	ENSMUST00000105799.8	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000040964.17	Arhgef10l	chr4	protein_coding	Rho guanine nucleotide exchange factor (GEF) 10-like
novel_NIR_13444	chr4	140344303	140347801	-	140344303	140376283	A5SS	ENSMUST00000143614.8	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040964.17	Arhgef10l	chr4	protein_coding	Rho guanine nucleotide exchange factor (GEF) 10-like
novel_NIR_13445	chr4	140344303	140347801	-	140344303	140393067	A5SS	ENSMUST00000069623.12	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040964.17	Arhgef10l	chr4	protein_coding	Rho guanine nucleotide exchange factor (GEF) 10-like
novel_NIR_13446	chr4	140429292	140429458	+	140428961	140429458	A5SS	ENSMUST00000071169.9	novel	0.08	1	12	1	12	n	0.00	0	6	0	6	n	0.23	16	53	16	53	y	0.10	2	19	2	19	n	0.08	3	36	3	36	n	0.33	9	18	9	18	y	0.14	3	19	3	19	n	0.06	1	16	1	16	n	0.33	3	6	3	6	y	0.00	0	16	0	16	n	0.00	0	15	0	15	n	0.16	5	27	5	27	y	ENSMUSG00000040945.14	Rcc2	chr4	protein_coding	regulator of chromosome condensation 2
novel_NIR_13447	chr4	140721373	140721626	+	140721373	140721623	A3SS	ENSMUST00000037055.14	novel	0.04	1	25	1	25	n	0.11	2	16	2	16	n	0.08	2	22	2	22	n	0.00	0	22	0	22	n	0.10	5	45	5	45	n	0.00	0	20	0	20	n	0.00	0	36	0	36	n	0.09	2	21	2	21	n	0.00	0	16	0	16	n	0.11	4	33	4	33	n	0.16	3	16	3	16	y	0.05	2	39	2	39	n	ENSMUSG00000036622.16	Atp13a2	chr4	protein_coding	ATPase type 13A2
novel_NIR_13448	chr4	140733814	140734074	+	140733814	140734064	A3SS	ENSMUST00000127833.3	novel	0.00	0	14	0	14	n	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	26	0	26	n	0.00	0	15	0	15	n	0.00	0	31	0	31	n	0.00	0	14	0	14	n	0.17	2	10	2	10	y	0.00	0	20	0	20	n	0.00	0	27	0	27	n	0.11	2	16	2	16	n	ENSMUSG00000036622.16	Atp13a2	chr4	protein_coding	ATPase type 13A2
novel_NIR_13449	chr4	140785508	140787670	-	140785508	140787834	A5SS	ENSMUST00000097816.9	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040860.17	Crocc	chr4	protein_coding	ciliary rootlet coiled-coil, rootletin
novel_NIR_13450	chr4	140802363	140805524	-	140802371	140805524	A3SS	ENSMUST00000132906.8	novel	0.00	0	21	0	21	n	0.00	0	9	0	9	n	0.00	0	22	0	22	n	0.00	0	17	0	17	n	0.00	0	28	0	28	n	0.00	0	15	0	15	n	0.00	0	21	0	21	n	0.17	2	10	2	10	y	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	19	0	19	n	ENSMUSG00000028923.15	Necap2	chr4	protein_coding	NECAP endocytosis associated 2
novel_NIR_13451	chr4	140846089	140862130	-	140846089	140847635	A5SS&ES	ENSMUST00000148204.8	novel	0.21	4	15	4	15	y	0.00	0	20	0	20	n	0.00	0	11	0	11	n	0.22	4	14	4	14	y	0.00	0	33	0	33	n	0.00	0	6	0	6	n	0.17	2	10	2	10	y	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.33	9	18	9	18	y	0.07	1	14	1	14	n	0.00	0	30	0	30	n	ENSMUSG00000040842.18	Szrd1	chr4	protein_coding	SUZ RNA binding domain containing 1
novel_NIR_13452	chr4	140846089	140862130	-	140846089	140867003	A5SS	ENSMUST00000039939.7	novel	0.40	4	6	4	6	y	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.36	4	7	4	7	y	0.00	0	17	0	17	n	0.00	0	3	0	3	n	0.12	2	14	2	14	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.36	9	16	9	16	y	0.14	1	6	1	6	n	0.00	0	7	0	7	n	ENSMUSG00000040842.18	Szrd1	chr4	protein_coding	SUZ RNA binding domain containing 1
novel_NIR_13453	chr4	140846092	140862130	-	140846092	140867003	A5SS	ENSMUST00000094549.11	novel	0.03	1	32	1	32	n	0.07	3	38	3	38	n	0.00	0	56	0	56	n	0.07	3	42	3	42	n	0.02	1	61	1	61	n	0.00	0	27	0	27	n	0.03	1	38	1	38	n	0.03	1	36	1	36	n	0.17	5	24	5	24	y	0.09	6	58	6	58	n	0.14	7	44	7	44	n	0.14	8	49	8	49	n	ENSMUSG00000040842.18	Szrd1	chr4	protein_coding	SUZ RNA binding domain containing 1
novel_NIR_13454	chr4	140847684	140862130	-	140847684	140867003	A5SS	ENSMUST00000148204.8	novel	0.30	16	37	16	37	y	0.18	8	36	8	36	y	0.00	0	31	0	31	n	0.28	25	64	25	64	y	0.17	15	73	15	73	y	0.00	0	31	0	31	n	0.20	17	67	17	67	y	0.03	1	37	1	37	n	0.36	21	37	21	37	y	0.42	46	64	46	64	y	0.32	33	70	33	70	y	0.55	51	42	51	42	y	ENSMUSG00000040842.18	Szrd1	chr4	protein_coding	SUZ RNA binding domain containing 1
novel_NIR_13455	chr4	140866491	140867003	-	140846089	140867003	A3SS	ENSMUST00000039939.7	novel	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.15	3	17	3	17	y	0.00	0	3	0	3	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.38	3	5	3	5	y	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	ENSMUSG00000040842.18	Szrd1	chr4	protein_coding	SUZ RNA binding domain containing 1
novel_NIR_13456	chr4	140968055	140969538	+	140968055	140972129	A3SS	ENSMUST00000141834.9	novel	0.10	7	64	7	64	n	0.13	6	39	6	39	n	0.00	0	12	0	12	n	0.12	9	63	9	63	n	0.09	7	71	7	71	n	0.00	0	19	0	19	n	0.15	8	46	8	46	y	0.04	1	25	1	25	n	0.04	2	43	2	43	n	0.07	5	63	5	63	n	0.06	3	48	3	48	n	0.04	2	46	2	46	n	ENSMUSG00000028919.12	Arhgef19	chr4	protein_coding	Rho guanine nucleotide exchange factor (GEF) 19
novel_NIR_13457	chr4	140968055	140969538	+	140968055	140973486	A3SS	ENSMUST00000140536.3	novel	0.20	7	28	7	28	y	0.24	6	19	6	19	y	0.00	0	14	0	14	n	0.32	9	19	9	19	y	0.15	7	39	7	39	y	0.00	0	6	0	6	n	0.23	8	27	8	27	y	0.10	1	9	1	9	n	0.12	2	14	2	14	n	0.12	5	36	5	36	n	0.21	3	11	3	11	y	0.06	2	31	2	31	n	ENSMUSG00000028919.12	Arhgef19	chr4	protein_coding	Rho guanine nucleotide exchange factor (GEF) 19
novel_NIR_13458	chr4	140968055	140973257	+	140968055	140973486	A3SS	ENSMUST00000140536.3	novel	0.00	0	28	0	28	n	0.05	1	19	1	19	n	0.00	0	14	0	14	n	0.00	0	19	0	19	n	0.05	2	39	2	39	n	0.25	2	6	2	6	y	0.00	0	27	0	27	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	36	0	36	n	0.00	0	11	0	11	n	0.03	1	31	1	31	n	ENSMUSG00000028919.12	Arhgef19	chr4	protein_coding	Rho guanine nucleotide exchange factor (GEF) 19
novel_NIR_13459	chr4	140969697	140972129	+	140970321	140972129	5pMXE	ENSMUST00000138096.8	novel	1.00	8	0	8	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.75	3	1	3	1	y	0.62	5	3	5	3	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.60	3	2	3	2	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	ENSMUSG00000028919.12	Arhgef19	chr4	protein_coding	Rho guanine nucleotide exchange factor (GEF) 19
novel_NIR_13460	chr4	140974520	140974689	+	140973920	140974689	A5SS	ENSMUST00000147903.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	1.00	1	0	1	0	n	ENSMUSG00000028919.12	Arhgef19	chr4	protein_coding	Rho guanine nucleotide exchange factor (GEF) 19
novel_NIR_13461	chr4	141190718	141190909	+	141190718	141190984	A3SS	ENSMUST00000006377.13	novel	0.12	1	7	1	7	n	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	20	0	20	n	0.15	3	17	3	17	y	0.00	0	7	0	7	n	0.00	0	20	0	20	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.06	1	16	1	16	n	0.00	0	11	0	11	n	ENSMUSG00000006215.13	Zbtb17	chr4	protein_coding	zinc finger and BTB domain containing 17
novel_NIR_13462	chr4	141191712	141191871	+	141191782	141191871	A5SS	ENSMUST00000142695.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000006215.13	Zbtb17	chr4	protein_coding	zinc finger and BTB domain containing 17
novel_NIR_13463	chr4	141193418	141193745	+	141193418	141193710	A3SS	ENSMUST00000130482.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000006215.13	Zbtb17	chr4	protein_coding	zinc finger and BTB domain containing 17
novel_NIR_13464	chr4	141197324	141197421	-	141197321	141197421	A3SS	ENSMUST00000078886.10	novel	0.00	0	26	0	26	n	0.27	6	16	6	16	y	0.00	0	34	0	34	n	0.00	0	30	0	30	n	0.05	2	39	2	39	n	0.00	0	16	0	16	n	0.09	2	21	2	21	n	0.00	0	22	0	22	n	0.00	0	21	0	21	n	0.05	2	39	2	39	n	0.00	0	23	0	23	n	0.02	1	49	1	49	n	ENSMUSG00000040761.17	Spen	chr4	protein_coding	spen family transcription repressor
novel_NIR_13465	chr4	141221706	141244147	-	141223200	141244147	3pMXE	ENSMUST00000144500.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000040761.17	Spen	chr4	protein_coding	spen family transcription repressor
novel_NIR_13466	chr4	141244629	141248170	-	141244629	141249383	A5SS	ENSMUST00000078886.10	novel	0.00	0	7	0	7	n	0.67	4	2	4	2	y	0.38	5	8	5	8	y	0.00	0	5	0	5	n	0.33	5	10	5	10	y	0.11	1	8	1	8	n	0.00	0	13	0	13	n	0.33	3	6	3	6	y	0.67	2	1	2	1	y	0.17	1	5	1	5	n	1.00	1	0	1	0	n	0.45	5	6	5	6	y	ENSMUSG00000040761.17	Spen	chr4	protein_coding	spen family transcription repressor
novel_NIR_13467	chr4	141492045	141493795	-	141492049	141493795	A3SS	ENSMUST00000038014.11	novel	0.00	0	19	0	19	n	0.00	0	16	0	16	n	0.00	0	36	0	36	n	0.00	0	26	0	26	n	0.00	0	37	0	37	n	0.00	0	20	0	20	n	0.00	0	37	0	37	n	0.00	0	20	0	20	n	0.00	0	20	0	20	n	0.00	0	25	0	25	n	0.00	0	19	0	19	n	0.22	7	25	7	25	y	ENSMUSG00000040697.11	Dnajc16	chr4	protein_coding	DnaJ heat shock protein family (Hsp40) member C16
novel_NIR_13468	chr4	141510417	141516200	-	141510417;141512065	141511999;141516200	ES	ENSMUST00000038014.11	novel	0.00	0	5.5	0	5;6	n	0.00	0	4.5	0	4;5	n	0.00	0	6.0	0	3;9	n	0.00	0	13.0	0	12;14	n	0.00	0	11.5	0	11;12	n	0.00	0	12.5	0	9;16	n	0.00	0	3.5	0	3;4	n	0.00	0	7.5	0	6;9	n	0.00	0	6.0	0	3;9	n	0.00	0	8.5	0	6;11	n	0.36	2	3.5	2	3;4	y	0.00	0	6.0	0	3;9	n	ENSMUSG00000040697.11	Dnajc16	chr4	protein_coding	DnaJ heat shock protein family (Hsp40) member C16
novel_NIR_13469	chr4	141521818	141523746	+	141523670	141523746	A5SS&ES	ENSMUST00000138359.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028914.14	Casp9	chr4	protein_coding	caspase 9
novel_NIR_13470	chr4	141549638	141550191	-	141549638	141552841	A5SS	ENSMUST00000102481.4	novel	1.00	4	0	4	0	y	0.50	1	1	1	1	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	6	0	6	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	8	0	8	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000058579.6	Cela2a	chr4	protein_coding	chymotrypsin-like elastase family, member 2A
novel_NIR_13471	chr4	141618272	141620542	-	141618272	141623739	A5SS	ENSMUST00000105780.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	6	0	6	0	y	1.00	5	0	5	0	y	1.00	4	0	4	0	y	1.00	8	0	8	0	y	1.00	5	0	5	0	y	1.00	5	0	5	0	y	1.00	10	0	10	0	y	1.00	3	0	3	0	y	1.00	7	0	7	0	y	ENSMUSG00000051435.12	Fhad1	chr4	protein_coding	forkhead-associated (FHA) phosphopeptide binding domain 1
novel_NIR_13472	chr4	141655795	141656128	-	141655795	141656841	A5SS	ENSMUST00000105780.8	novel	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.43	3	4	3	4	y	ENSMUSG00000051435.12	Fhad1	chr4	protein_coding	forkhead-associated (FHA) phosphopeptide binding domain 1
novel_NIR_13473	chr4	141765244	141781313	-	141765244	141811373	A5SS	ENSMUST00000036572.4	novel	0.18	2	9	2	9	y	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.10	1	9	1	9	n	0.00	0	19	0	19	n	0.10	1	9	1	9	n	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.00	0	19	0	19	n	ENSMUSG00000040616.4	Tmem51	chr4	protein_coding	transmembrane protein 51
novel_NIR_13474	chr4	141765244	141811796	-	141765244	141811373	5pMXE	ENSMUST00000036572.4	novel	0.18	2	9	2	9	y	0.20	2	8	2	8	y	0.22	2	7	2	7	y	0.18	2	9	2	9	y	0.17	4	19	4	19	y	0.25	3	9	3	9	y	0.17	3	15	3	15	y	0.24	4	13	4	13	y	0.11	1	8	1	8	n	0.36	9	16	9	16	y	0.15	2	11	2	11	y	0.27	7	19	7	19	y	ENSMUSG00000040616.4	Tmem51	chr4	protein_coding	transmembrane protein 51
novel_NIR_13475	chr4	142855544	142858280	-	142838347	142858280	A3SS	ENSMUST00000105778.8	novel	0.00	0	31	0	31	n	0.00	0	22	0	22	n	0.00	0	34	0	34	n	0.07	2	28	2	28	n	0.09	5	48	5	48	n	0.12	2	15	2	15	n	0.17	8	40	8	40	n	0.08	2	22	2	22	n	0.26	6	17	6	17	y	0.17	5	25	5	25	y	0.00	0	21	0	21	n	0.11	4	31	4	31	n	ENSMUSG00000057637.14	Prdm2	chr4	protein_coding	PR domain containing 2, with ZNF domain
novel_NIR_13476	chr4	142868804	142888234	-	142868804	142888626	A5SS	ENSMUST00000105778.8	novel	0.00	0	25	0	25	n	0.00	0	5	0	5	n	0.16	3	16	3	16	y	0.14	2	12	2	12	n	0.00	0	23	0	23	n	0.00	0	6	0	6	n	0.00	0	23	0	23	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	ENSMUSG00000057637.14	Prdm2	chr4	protein_coding	PR domain containing 2, with ZNF domain
novel_NIR_13477	chr4	142868804;142872016	142871960;142888626	-	142868804	142888626	cassetteExon	ENSMUST00000105778.8	novel	0.04	1.0	25	2;0	25	n	0.17	1.0	5	0;2	5	n	0.06	1.0	16	1;1	16	n	0.31	5.5	12	7;4	12	y	0.19	5.5	23	8;3	23	y	0.08	0.5	6	0;1	6	n	0.13	3.5	23	4;3	23	n	0.14	1.5	9	2;1	9	n	0.23	4.5	15	6;3	15	y	0.20	3.0	12	4;2	12	y	0.00	0.0	6	0;0	6	n	0.19	3.0	13	5;1	13	n	ENSMUSG00000057637.14	Prdm2	chr4	protein_coding	PR domain containing 2, with ZNF domain
novel_NIR_13478	chr4	142872016	142888626	-	142868804	142888626	A3SS	ENSMUST00000105778.8	novel	0.00	0	25	0	25	n	0.29	2	5	2	5	y	0.06	1	16	1	16	n	0.25	4	12	4	12	n	0.12	3	23	3	23	n	0.14	1	6	1	6	n	0.12	3	23	3	23	n	0.10	1	9	1	9	n	0.17	3	15	3	15	n	0.14	2	12	2	12	n	0.00	0	6	0	6	n	0.07	1	13	1	13	n	ENSMUSG00000057637.14	Prdm2	chr4	protein_coding	PR domain containing 2, with ZNF domain
novel_NIR_13479	chr4	142907561	142939185	-	142907561	142921231	5pMXE	ENSMUST00000154280.8	novel	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.00	0	8	0	8	n	0.00	0	15	0	15	n	0.12	1	7	1	7	n	0.18	2	9	2	9	y	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.17	2	10	2	10	y	ENSMUSG00000057637.14	Prdm2	chr4	protein_coding	PR domain containing 2, with ZNF domain
novel_NIR_13480	chr4	142907561	142939185	-	142907561;142921304	142921231;142939185	ES	ENSMUST00000105778.8	novel	0.00	0	4.0	0	4;4	n	0.17	1	5.0	1	4;6	n	0.00	0	5.0	0	8;2	n	0.00	0	11.0	0	15;7	n	0.14	1	6.0	1	7;5	n	0.29	2	5.0	2	9;1	y	0.00	0	7.0	0	10;4	n	0.00	0	2.5	0	4;1	n	0.17	1	5.0	1	5;5	n	0.00	0	6.5	0	10;3	n	0.00	0	4.0	0	6;2	n	0.19	2	8.5	2	10;7	y	ENSMUSG00000057637.14	Prdm2	chr4	protein_coding	PR domain containing 2, with ZNF domain
novel_NIR_13481	chr4	142914435	142921231	-	142907561	142921231	A3SS	ENSMUST00000105778.8	novel	0.33	2	4	2	4	y	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.09	1	10	1	10	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	ENSMUSG00000057637.14	Prdm2	chr4	protein_coding	PR domain containing 2, with ZNF domain
novel_NIR_13482	chr4	144619945	144620152	+	144619945	144620155	A3SS	ENSMUST00000142808.8	novel	0.00	0	20	0	20	n	0.13	2	13	2	13	n	0.00	0	3	0	3	n	0.05	1	19	1	19	n	0.13	3	20	3	20	n	0.00	0	3	0	3	n	0.08	2	23	2	23	n	0.00	0	5	0	5	n	0.14	3	18	3	18	n	0.19	4	17	4	17	y	0.29	9	22	9	22	y	0.14	4	25	4	25	n	ENSMUSG00000066026.15	Dhrs3	chr4	protein_coding	dehydrogenase/reductase (SDR family) member 3
novel_NIR_13483	chr4	144619945	144620152	+	144619945	144645221	A3SS	ENSMUST00000128926.8	novel	0.00	0	10	0	10	n	0.13	2	13	2	13	n	0.00	0	6	0	6	n	0.05	1	18	1	18	n	0.18	3	14	3	14	y	0.00	0	6	0	6	n	0.09	2	21	2	21	n	0.00	0	5	0	5	n	0.14	3	18	3	18	n	0.15	4	22	4	22	y	0.50	9	9	9	9	n	0.22	4	14	4	14	y	ENSMUSG00000066026.15	Dhrs3	chr4	protein_coding	dehydrogenase/reductase (SDR family) member 3
novel_NIR_13484	chr4	144619945	144620181	+	144619945	144620155	A3SS	ENSMUST00000142808.8	novel	0.00	0	20	0	20	n	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.00	0	19	0	19	n	0.00	0	20	0	20	n	0.00	0	3	0	3	n	0.15	4	23	4	23	y	0.00	0	5	0	5	n	0.18	4	18	4	18	y	0.00	0	17	0	17	n	0.04	1	22	1	22	n	0.07	2	25	2	25	n	ENSMUSG00000066026.15	Dhrs3	chr4	protein_coding	dehydrogenase/reductase (SDR family) member 3
novel_NIR_13485	chr4	144619945	144620181	+	144619945	144645221	A3SS	ENSMUST00000128926.8	novel	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	18	0	18	n	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.16	4	21	4	21	y	0.00	0	5	0	5	n	0.18	4	18	4	18	y	0.00	0	22	0	22	n	0.10	1	9	1	9	n	0.12	2	14	2	14	n	ENSMUSG00000066026.15	Dhrs3	chr4	protein_coding	dehydrogenase/reductase (SDR family) member 3
novel_NIR_13486	chr4	144637737	144645221	+	144619945	144645221	A5SS	ENSMUST00000128926.8	novel	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	18	0	18	n	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.00	0	21	0	21	n	0.29	2	5	2	5	y	0.00	0	18	0	18	n	0.00	0	22	0	22	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	ENSMUSG00000066026.15	Dhrs3	chr4	protein_coding	dehydrogenase/reductase (SDR family) member 3
novel_NIR_13487	chr4	144645364	144645898	+	144645364	144646411	A3SS	ENSMUST00000105744.8	novel	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	8	0	8	n	1.00	2	0	2	0	y	0.00	0	9	0	9	n	ENSMUSG00000066026.15	Dhrs3	chr4	protein_coding	dehydrogenase/reductase (SDR family) member 3
novel_NIR_13488	chr4	144792535	144792918	-	144792535	144795648	A5SS	ENSMUST00000036579.14	novel	0.04	2	48	2	48	n	0.00	0	44	0	44	n	0.00	0	71	0	71	n	0.18	9	42	9	42	y	0.10	9	84	9	84	n	0.08	4	45	4	45	n	0.06	4	66	4	66	n	0.03	1	37	1	37	n	0.02	1	42	1	42	n	0.00	0	100	0	100	n	0.00	0	41	0	41	n	0.06	3	50	3	50	n	ENSMUSG00000020220.17	Vps13d	chr4	protein_coding	vacuolar protein sorting 13D
novel_NIR_13489	chr4	144813381	144813695	-	144813400	144813695	A3SS	ENSMUST00000036579.14	novel	0.16	5	26	5	26	y	0.00	0	28	0	28	n	0.09	4	41	4	41	n	0.20	10	39	10	39	y	0.12	10	73	10	73	n	0.08	2	24	2	24	n	0.12	7	52	7	52	n	0.11	5	42	5	42	n	0.16	6	31	6	31	y	0.20	14	57	14	57	y	0.19	5	22	5	22	y	0.18	11	50	11	50	y	ENSMUSG00000020220.17	Vps13d	chr4	protein_coding	vacuolar protein sorting 13D
novel_NIR_13490	chr4	144826637	144832369	-	144826637;144830258	144830184;144832369	ES	ENSMUST00000185113.2	novel	0.91	5	0.5	5	0;1	y	0.94	8	0.5	8	1;0	y	0.86	12	2.0	12	0;4	y	0.92	18	1.5	18	0;3	y	0.97	19	0.5	19	1;0	y	0.92	11	1.0	11	0;2	y	0.76	11	3.5	11	6;1	y	0.60	3	2.0	3	1;3	y	1.00	7	0.0	7	0;0	y	0.89	12	1.5	12	1;2	y	0.91	5	0.5	5	0;1	y	1.00	14	0.0	14	0;0	y	ENSMUSG00000020220.17	Vps13d	chr4	protein_coding	vacuolar protein sorting 13D
novel_NIR_13491	chr4	144826637	144832369	-	144826640	144832369	A3SS	ENSMUST00000020441.13	novel	0.28	5	13	5	13	y	0.38	8	13	8	13	y	0.41	12	17	12	17	y	0.43	18	24	18	24	y	0.46	19	22	19	22	y	0.42	11	15	11	15	y	0.28	11	29	11	29	y	0.25	3	9	3	9	y	0.39	7	11	7	11	y	0.34	12	23	12	23	y	0.38	5	8	5	8	y	0.39	14	22	14	22	y	ENSMUSG00000020220.17	Vps13d	chr4	protein_coding	vacuolar protein sorting 13D
novel_NIR_13492	chr4	144826637	144832369	-	144830258	144832369	A3SS&ES	ENSMUST00000036579.14	novel	0.83	5	1	5	1	y	1.00	8	0	8	0	y	0.75	12	4	12	4	y	0.86	18	3	18	3	y	1.00	19	0	19	0	y	0.85	11	2	11	2	y	0.92	11	1	11	1	y	0.50	3	3	3	3	y	1.00	7	0	7	0	y	0.86	12	2	12	2	y	0.83	5	1	5	1	y	1.00	14	0	14	0	y	ENSMUSG00000020220.17	Vps13d	chr4	protein_coding	vacuolar protein sorting 13D
novel_NIR_13493	chr4	144853366	144854507	-	144853192	144854507	A3SS	ENSMUST00000036579.14	novel	0.00	0	12	0	12	n	0.18	2	9	2	9	y	0.00	0	22	0	22	n	0.00	0	21	0	21	n	0.00	0	33	0	33	n	0.00	0	8	0	8	n	0.00	0	20	0	20	n	0.00	0	20	0	20	n	0.00	0	18	0	18	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	30	0	30	n	ENSMUSG00000020220.17	Vps13d	chr4	protein_coding	vacuolar protein sorting 13D
novel_NIR_13494	chr4	144875918	144881139	-	144875918;144879368	144879217;144881139	ES	ENSMUST00000036579.14	novel	0.00	0	7.5	0	5;10	n	0.27	2	5.5	2	4;7	y	0.11	2	16.5	2	17;16	n	0.00	0	13.5	0	10;17	n	0.00	0	22.5	0	18;27	n	0.00	0	9.5	0	11;8	n	0.00	0	20.5	0	19;22	n	0.07	1	14.0	1	16;12	n	0.00	0	15.0	0	6;24	n	0.14	3	18.0	3	15;21	n	0.00	0	17.0	0	8;26	n	0.00	0	20.0	0	17;23	n	ENSMUSG00000020220.17	Vps13d	chr4	protein_coding	vacuolar protein sorting 13D
novel_NIR_13495	chr4	144888698	144889759	-	144888698	144889746	A5SS	ENSMUST00000036579.14	novel	0.08	1	11	1	11	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.06	1	17	1	17	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.50	2	2	2	2	y	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.12	2	14	2	14	n	ENSMUSG00000020220.17	Vps13d	chr4	protein_coding	vacuolar protein sorting 13D
novel_NIR_13496	chr4	146207222	146209453	+	146188929	146209453	A5SS	ENSMUST00000154592.8	novel	1.00	8	0	8	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000085525.8	Gm13166	chr4	lncRNA	predicted gene 13166
novel_NIR_13497	chr4	146207222	146209453	+	146207051	146209453	A5SS	ENSMUST00000146671.8	novel	0.73	8	3	8	3	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000085525.8	Gm13166	chr4	lncRNA	predicted gene 13166
novel_NIR_13498	chr4	146207266	146209453	+	146188929	146209453	A5SS	ENSMUST00000154592.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000085525.8	Gm13166	chr4	lncRNA	predicted gene 13166
novel_NIR_13499	chr4	146207266	146209453	+	146207051	146209453	A5SS	ENSMUST00000146671.8	novel	0.00	0	3	0	3	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	ENSMUSG00000085525.8	Gm13166	chr4	lncRNA	predicted gene 13166
novel_NIR_13500	chr4	146209545	146508053	+	146209545	146214879	3pMXE	ENSMUST00000146671.8	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.83	5	1	5	1	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000085525.8	Gm13166	chr4	lncRNA	predicted gene 13166
novel_NIR_13501	chr4	146209545	146508053	+	146209545	146214923	3pMXE	ENSMUST00000144166.8	novel	0.75	3	1	3	1	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.50	1	1	1	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.62	5	3	5	3	y	0.40	2	3	2	3	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	ENSMUSG00000085525.8	Gm13166	chr4	lncRNA	predicted gene 13166
novel_NIR_13502	chr4	146209545	146508053	+	146209545	146214926	3pMXE	ENSMUST00000124975.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	5	0	5	0	y	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000085525.8	Gm13166	chr4	lncRNA	predicted gene 13166
novel_NIR_13503	chr4	146533555	146547962	+	146533532	146547962	A5SS	ENSMUST00000105733.3	novel	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.14	2	12	2	12	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.11	1	8	1	8	n	0.17	2	10	2	10	y	0.00	0	4	0	4	n	ENSMUSG00000070605.5	Zfp992	chr4	protein_coding	zinc finger protein 992
novel_NIR_13504	chr4	146541165	146547962	+	146533532	146547962	A5SS	ENSMUST00000105733.3	novel	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.25	2	6	2	6	y	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	12	0	12	n	1.00	1	0	1	0	n	0.20	1	4	1	4	n	0.00	0	8	0	8	n	0.09	1	10	1	10	n	0.00	0	4	0	4	n	ENSMUSG00000070605.5	Zfp992	chr4	protein_coding	zinc finger protein 992
novel_NIR_13505	chr4	146630658	146664501	-	146630658	146631236	5pMXE	ENSMUST00000145269.2	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000086046.2	1700095A21Rik	chr4	lncRNA	RIKEN cDNA 1700095A21 gene
novel_NIR_13506	chr4	147209784	147447268	+	147445909	147447268	5pMXE	ENSMUST00000154154.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000078497.10	Zfp978	chr4	protein_coding	zinc finger protein 978
novel_NIR_13507	chr4	147209784	147447268	+	147445938	147447268	5pMXE	ENSMUST00000133078.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000078497.10	Zfp978	chr4	protein_coding	zinc finger protein 978
novel_NIR_13508	chr4	147527996	147592043	+	147577037	147592043	5pMXE	ENSMUST00000105721.9	novel	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000078496.10	Zfp982	chr4	protein_coding	zinc finger protein 982
novel_NIR_13509	chr4	147536263	147592043	+	147577037	147592043	5pMXE	ENSMUST00000105721.9	novel	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	12	0	12	0	y	0.91	10	1	10	1	y	1.00	1	0	1	0	n	1.00	9	0	9	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	1.00	10	0	10	0	y	1.00	2	0	2	0	y	1.00	11	0	11	0	y	ENSMUSG00000078496.10	Zfp982	chr4	protein_coding	zinc finger protein 982
novel_NIR_13510	chr4	147891640	147932735	-	147891640	147894125	5pMXE	ENSMUST00000105734.10	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.33	1	2	1	2	n	0.50	1	1	1	1	n	ENSMUSG00000078495.11	Zfp984	chr4	protein_coding	zinc finger protein 984
novel_NIR_13511	chr4	147945467	147945811	-	147945470	147945811	A3SS	ENSMUST00000173034.8	novel	0.20	2	8	2	8	y	0.31	4	9	4	9	y	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	ENSMUSG00000029022.19	Miip	chr4	protein_coding	migration and invasion inhibitory protein
novel_NIR_13512	chr4	147950876	147952526	-	147950876	147952878	A5SS	ENSMUST00000141534.3	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.29	2	5	2	5	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000029022.19	Miip	chr4	protein_coding	migration and invasion inhibitory protein
novel_NIR_13513	chr4	147950876	147952526	-	147950876	147952959	A5SS	ENSMUST00000172710.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029022.19	Miip	chr4	protein_coding	migration and invasion inhibitory protein
novel_NIR_13514	chr4	147950876	147952526	-	147950876;147952059	147951788;147952526	ES	ENSMUST00000119975.3	novel	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	0.00	0	0.5	0	1;0	n	0.00	0	0.5	0	0;1	n	0.67	1	0.5	1	1;0	n	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	0.80	2	0.5	2	1;0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	ENSMUSG00000029022.19	Miip	chr4	protein_coding	migration and invasion inhibitory protein
novel_NIR_13515	chr4	147987450	147987812	-	147987467	147987812	A3SS	ENSMUST00000030884.10	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.06	2	33	2	33	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	ENSMUSG00000029020.14	Mfn2	chr4	protein_coding	mitofusin 2
novel_NIR_13516	chr4	147987951	147988907	-	147987954	147988907	A3SS	ENSMUST00000105715.8	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	0.60	3	2	3	2	y	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	-	-	-	-	-	-	ENSMUSG00000029020.14	Mfn2	chr4	protein_coding	mitofusin 2
novel_NIR_13517	chr4	148101435	148102360	-	148101435;148102119	148101953;148102360	ES	ENSMUST00000137724.8	novel	0.00	0	1.0	0	2;0	n	-	-	-	-	-	-	0.29	2	5.0	2	7;3	y	0.00	0	4.0	0	4;4	n	0.40	1	1.5	1	0;3	n	0.00	0	0.5	0	1;0	n	0.00	0	1.0	0	0;2	n	0.00	0	1.0	0	2;0	n	0.00	0	1.5	0	2;1	n	0.00	0	4.5	0	6;3	n	0.40	1	1.5	1	3;0	n	0.25	1	3.0	1	3;3	n	ENSMUSG00000029016.14	Clcn6	chr4	protein_coding	chloride channel, voltage-sensitive 6
novel_NIR_13518	chr4	148123866	148126044	+	148123866	148126041	A3SS	ENSMUST00000141283.8	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.26	9	25	9	25	y	0.00	0	1	0	1	n	0.00	0	11	0	11	n	0.00	0	19	0	19	n	0.25	1	3	1	3	n	0.10	1	9	1	9	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	ENSMUSG00000029009.18	Mthfr	chr4	protein_coding	methylenetetrahydrofolate reductase
novel_NIR_13519	chr4	148224477	148224607	+	148224477	148225242	A3SS	ENSMUST00000084129.9	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029003.12	Mad2l2	chr4	protein_coding	MAD2 mitotic arrest deficient-like 2
novel_NIR_13520	chr4	148242615	148242994	-	148241163	148242994	A3SS	ENSMUST00000167160.8	novel	0.00	0	6	0	6	n	0.33	2	4	2	4	y	0.00	0	17	0	17	n	0.18	2	9	2	9	n	0.21	3	11	3	11	y	0.22	2	7	2	7	y	0.24	4	13	4	13	y	0.09	1	10	1	10	n	0.11	1	8	1	8	n	0.19	3	13	3	13	y	0.00	0	9	0	9	n	0.08	1	11	1	11	n	ENSMUSG00000029001.16	Fbxo44	chr4	protein_coding	F-box protein 44
novel_NIR_13521	chr4	148528586	148531364	-	148528586	148528999	5pMXE	ENSMUST00000156686.2	novel	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000047719.3	Ubiad1	chr4	protein_coding	UbiA prenyltransferase domain containing 1
novel_NIR_13522	chr4	148549619	148550455	+	148549619	148550348	A3SS	ENSMUST00000103221.10	novel	0.00	0	5	0	5	n	0.40	2	3	2	3	y	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.00	0	30	0	30	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.04	1	23	1	23	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	ENSMUSG00000028991.16	Mtor	chr4	protein_coding	mechanistic target of rapamycin kinase
novel_NIR_13523	chr4	148622814	148622920	+	148622831	148622920	A5SS	ENSMUST00000103221.10	novel	0.00	0	34	0	34	n	0.00	0	18	0	18	n	0.00	0	51	0	51	n	0.00	0	33	0	33	n	0.00	0	44	0	44	n	0.00	0	32	0	32	n	0.00	0	37	0	37	n	0.08	2	23	2	23	n	0.00	0	26	0	26	n	0.15	6	35	6	35	y	0.00	0	33	0	33	n	0.00	0	51	0	51	n	ENSMUSG00000028991.16	Mtor	chr4	protein_coding	mechanistic target of rapamycin kinase
novel_NIR_13524	chr4	148697182	148698362	+	148697182	148698215	A3SS	ENSMUST00000052060.7	novel	0.12	47	358	47	358	n	0.11	39	312	39	312	n	0.11	30	251	30	251	n	0.11	49	396	49	396	n	0.14	68	435	68	435	n	0.11	20	158	20	158	n	0.15	66	387	66	387	y	0.13	33	228	33	228	n	0.12	35	260	35	260	n	0.09	45	446	45	446	n	0.11	41	325	41	325	n	0.13	64	415	64	415	n	ENSMUSG00000028979.18	Masp2	chr4	protein_coding	mannan-binding lectin serine peptidase 2
novel_NIR_13525	chr4	148702282	148703721	-	148702282	148703104	5pMXE	ENSMUST00000186711.2	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	6	0	6	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041459.16	Tardbp	chr4	protein_coding	TAR DNA binding protein
novel_NIR_13526	chr4	148702282	148703721	-	148702282	148703122	A5SS&ES	ENSMUST00000140897.8	novel	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.33	2	4	2	4	y	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	19	0	19	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	ENSMUSG00000041459.16	Tardbp	chr4	protein_coding	TAR DNA binding protein
novel_NIR_13527	chr4	148702282	148703721	-	148702282	148703131	A5SS&ES	ENSMUST00000191450.7	novel	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	ENSMUSG00000041459.16	Tardbp	chr4	protein_coding	TAR DNA binding protein
novel_NIR_13528	chr4	148751723	148751809	+	148751300	148751809	A5SS	ENSMUST00000105698.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000070577.6	Gm572	chr4	protein_coding	predicted gene 572
novel_NIR_13529	chr4	14886682	14893501	+	14886682;14892499	14892393;14893501	ES	ENSMUST00000029875.4	novel	0.15	5	28.0	5	28;28	y	0.32	7	15.0	7	14;16	y	0.07	2	28.0	2	19;37	n	0.03	1	30.5	1	29;32	n	0.08	3	35.0	3	32;38	n	0.00	0	20.5	0	18;23	n	0.00	0	30.5	0	26;35	n	0.11	3	25.5	3	31;20	n	0.16	4	21.0	4	15;27	y	0.29	15	37.5	15	43;32	y	0.12	3	22.5	3	24;21	n	0.16	5	26.5	5	32;21	y	ENSMUSG00000028221.4	Pip4p2	chr4	protein_coding	phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2
novel_NIR_13530	chr4	149055092	149126178	-	149099166	149126178	3pMXE	ENSMUST00000148203.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000028975.17	Pex14	chr4	protein_coding	peroxisomal biogenesis factor 14
novel_NIR_13531	chr4	149202452	149203536	+	149202380	149203536	A5SS	ENSMUST00000030816.4	novel	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.20	3	12	3	12	y	0.13	3	20	3	20	n	0.13	2	13	2	13	n	0.20	1	4	1	4	n	0.04	1	24	1	24	n	0.18	2	9	2	9	y	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.08	1	12	1	12	n	0.00	0	12	0	12	n	ENSMUSG00000028974.14	Dffa	chr4	protein_coding	DNA fragmentation factor, alpha subunit
novel_NIR_13532	chr4	149299482	149306684	-	149299482;149305247	149304999;149306684	ES	ENSMUST00000238956.2	novel	0.92	27	2.5	27	5;0	y	0.81	21	5.0	21	7;3	y	0.95	35	2.0	35	4;0	y	0.88	34	4.5	34	7;2	y	0.93	79	5.5	79	10;1	y	0.93	27	2.0	27	4;0	y	0.90	39	4.5	39	6;3	y	0.84	24	4.5	24	6;3	y	0.94	33	2.0	33	3;1	y	0.93	70	5.0	70	8;2	y	0.84	31	6.0	31	10;2	y	0.86	64	10.0	64	17;3	y	ENSMUSG00000063077.16	Kif1b	chr4	protein_coding	kinesin family member 1B
novel_NIR_13533	chr4	149342460	149345617	-	149342538	149345617	A3SS	ENSMUST00000238956.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	15	0	15	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000063077.16	Kif1b	chr4	protein_coding	kinesin family member 1B
novel_NIR_13534	chr4	149342538	149346593	-	149342538;149345658	149345617;149346593	ES	ENSMUST00000238956.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1.0	0	0;2	n	-	-	-	-	-	-	0.00	0	1.0	0	0;2	n	0.40	1	1.5	1	0;3	n	0.22	5	18.0	5	15;21	y	1.00	3	0.0	3	0;0	y	0.00	0	0.5	0	0;1	n	1.00	1	0.0	1	0;0	n	0.00	0	0.5	0	0;1	n	0.00	0	1.0	0	0;2	n	ENSMUSG00000063077.16	Kif1b	chr4	protein_coding	kinesin family member 1B
novel_NIR_13535	chr4	14936539	14942200	+	14936539;14938557	14938484;14942200	ES	ENSMUST00000137532.8	novel	0.20	1	4.0	1	8;0	n	0.25	3	9.0	3	12;6	y	0.00	0	13.0	0	13;13	n	0.22	2	7.0	2	7;7	y	0.27	4	11.0	4	9;13	y	0.08	1	12.0	1	10;14	n	0.17	2	9.5	2	6;13	y	0.09	1	10.0	1	10;10	n	0.09	1	10.0	1	8;12	n	0.06	1	14.5	1	12;17	n	0.00	0	6.5	0	4;9	n	0.08	1	11.0	1	11;11	n	ENSMUSG00000086587.8	Gm11837	chr4	lncRNA	predicted gene 11837
novel_NIR_13536	chr4	149559052	149561343	-	149559052	149564201	A5SS	ENSMUST00000126896.2	novel	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028992.14	Nmnat1	chr4	protein_coding	nicotinamide nucleotide adenylyltransferase 1
novel_NIR_13537	chr4	149559052	149561343	-	149559052	149569360	A5SS	ENSMUST00000105693.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000028992.14	Nmnat1	chr4	protein_coding	nicotinamide nucleotide adenylyltransferase 1
novel_NIR_13538	chr4	149559052	149563047	-	149559052	149564201	A5SS	ENSMUST00000126896.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028992.14	Nmnat1	chr4	protein_coding	nicotinamide nucleotide adenylyltransferase 1
novel_NIR_13539	chr4	149559052	149563047	-	149559052	149569360	A5SS	ENSMUST00000105693.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000028992.14	Nmnat1	chr4	protein_coding	nicotinamide nucleotide adenylyltransferase 1
novel_NIR_13540	chr4	149559052	149569609	-	149559052	149564201	A5SS&ES	ENSMUST00000126896.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028992.14	Nmnat1	chr4	protein_coding	nicotinamide nucleotide adenylyltransferase 1
novel_NIR_13541	chr4	149559052	149569609	-	149559052	149569360	A5SS	ENSMUST00000105693.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000028992.14	Nmnat1	chr4	protein_coding	nicotinamide nucleotide adenylyltransferase 1
novel_NIR_13542	chr4	149569730	149570315	+	149569730	149569826	3pMXE	ENSMUST00000138464.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028990.14	Lzic	chr4	protein_coding	leucine zipper and CTNNBIP1 domain containing
novel_NIR_13543	chr4	149569730	149570315	+	149569730	149570319	A3SS	ENSMUST00000124413.8	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000028990.14	Lzic	chr4	protein_coding	leucine zipper and CTNNBIP1 domain containing
novel_NIR_13544	chr4	149569730	149570315	+	149569730;149570049	149569826;149570315	ES	ENSMUST00000141293.8	novel	0.75	3	1.0	3	0;2	y	-	-	-	-	-	-	0.67	2	1.0	2	2;0	y	0.00	0	1.0	0	0;2	n	0.33	1	2.0	1	0;4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1.0	0	0;2	n	0.40	1	1.5	1	0;3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028990.14	Lzic	chr4	protein_coding	leucine zipper and CTNNBIP1 domain containing
novel_NIR_13545	chr4	149570049	149570330	+	149570049	149570315	A3SS	ENSMUST00000141293.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028990.14	Lzic	chr4	protein_coding	leucine zipper and CTNNBIP1 domain containing
novel_NIR_13546	chr4	149570049	149570330	+	149570049	149570319	A3SS	ENSMUST00000146427.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000028990.14	Lzic	chr4	protein_coding	leucine zipper and CTNNBIP1 domain containing
novel_NIR_13547	chr4	149722852	149727652	+	149722852;149726171	149726115;149727652	ES	ENSMUST00000105691.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.36	2	3.5	2	4;3	y	1.00	1	0.0	1	0;0	n	0.80	4	1.0	4	1;1	y	-	-	-	-	-	-	0.00	0	6.0	0	5;7	n	1.00	1	0.0	1	0;0	n	0.00	0	1.5	0	0;3	n	0.50	1	1.0	1	2;0	n	0.00	0	3.0	0	3;3	n	0.50	3	3.0	3	3;3	y	ENSMUSG00000039953.14	Clstn1	chr4	protein_coding	calsyntenin 1
novel_NIR_13548	chr4	149740135	149740838	-	149740088	149740838	A3SS	ENSMUST00000038859.14	novel	0.62	5	3	5	3	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000039936.19	Pik3cd	chr4	protein_coding	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta
novel_NIR_13549	chr4	149803292	149803969	-	149803401	149803969	A3SS	ENSMUST00000105687.9	novel	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.15	3	17	3	17	y	0.11	1	8	1	8	n	0.00	0	6	0	6	n	0.13	2	13	2	13	n	0.00	0	8	0	8	n	0.00	0	15	0	15	n	0.00	0	15	0	15	n	0.06	1	15	1	15	n	0.00	0	11	0	11	n	ENSMUSG00000044700.16	Tmem201	chr4	protein_coding	transmembrane protein 201
novel_NIR_13550	chr4	149803347	149803969	-	149803401	149803969	A3SS	ENSMUST00000105687.9	novel	0.14	2	12	2	12	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.19	4	17	4	17	y	0.00	0	8	0	8	n	0.40	4	6	4	6	y	0.28	5	13	5	13	y	0.11	1	8	1	8	n	0.00	0	15	0	15	n	0.21	4	15	4	15	y	0.12	2	15	2	15	n	0.00	0	11	0	11	n	ENSMUSG00000044700.16	Tmem201	chr4	protein_coding	transmembrane protein 201
novel_NIR_13551	chr4	149847003	149858066	-	149847003	149858457	A5SS	ENSMUST00000105686.3	novel	0.02	1	41	1	41	n	0.00	0	25	0	25	n	0.03	2	62	2	62	n	0.00	0	72	0	72	n	0.01	1	85	1	85	n	0.00	0	18	0	18	n	0.03	2	67	2	67	n	0.15	4	23	4	23	y	0.00	0	41	0	41	n	0.01	1	92	1	92	n	0.00	0	67	0	67	n	0.00	0	65	0	65	n	ENSMUSG00000028982.10	Slc25a33	chr4	protein_coding	solute carrier family 25, member 33
novel_NIR_13552	chr4	150080838	150083293	-	150080838	150085607	A5SS	ENSMUST00000153394.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.88	7	1	7	1	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000028980.15	H6pd	chr4	protein_coding	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)
novel_NIR_13553	chr4	150080838	150083293	-	150080838	150093208	A5SS	ENSMUST00000030830.4	novel	0.00	0	17	0	17	n	0.00	0	18	0	18	n	0.29	7	17	7	17	y	0.00	0	21	0	21	n	0.00	0	50	0	50	n	0.03	1	30	1	30	n	0.03	1	28	1	28	n	0.00	0	31	0	31	n	0.00	0	21	0	21	n	0.00	0	47	0	47	n	0.00	0	31	0	31	n	0.00	0	38	0	38	n	ENSMUSG00000028980.15	H6pd	chr4	protein_coding	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)
novel_NIR_13554	chr4	150080838	150084234	-	150080838	150085607	A5SS	ENSMUST00000153394.2	novel	0.95	19	1	19	1	y	1.00	21	0	21	0	y	0.99	146	1	146	1	y	0.97	30	1	30	1	y	0.95	100	5	100	5	y	0.97	59	2	59	2	y	0.98	45	1	45	1	y	1.00	20	0	20	0	y	0.92	22	2	22	2	y	0.98	47	1	47	1	y	0.97	30	1	30	1	y	0.94	50	3	50	3	y	ENSMUSG00000028980.15	H6pd	chr4	protein_coding	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)
novel_NIR_13555	chr4	150080838	150084234	-	150080838	150093208	A5SS	ENSMUST00000030830.4	novel	0.53	19	17	19	17	y	0.54	21	18	21	18	y	0.90	146	17	146	17	y	0.59	30	21	30	21	y	0.67	100	50	100	50	y	0.66	59	30	59	30	y	0.62	45	28	45	28	y	0.39	20	31	20	31	y	0.51	22	21	22	21	y	0.50	47	47	47	47	y	0.49	30	31	30	31	y	0.57	50	38	50	38	n	ENSMUSG00000028980.15	H6pd	chr4	protein_coding	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)
novel_NIR_13556	chr4	150080838;150084483	150084234;150093208	-	150080838	150093208	cassetteExon	ENSMUST00000030830.4	novel	0.36	9.5	17	19;0	17	n	0.37	10.5	18	21;0	18	n	0.81	73.0	17	146;0	17	n	0.42	15.0	21	30;0	21	n	0.50	50.0	50	100;0	50	n	0.50	29.5	30	59;0	30	n	0.45	22.5	28	45;0	28	n	0.24	10.0	31	20;0	31	n	0.34	11.0	21	22;0	21	n	0.33	23.5	47	47;0	47	n	0.33	15.0	31	30;0	31	n	0.41	26.0	38	50;2	38	y	ENSMUSG00000028980.15	H6pd	chr4	protein_coding	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)
novel_NIR_13557	chr4	150084483	150087489	-	150084483	150085607	5pMXE	ENSMUST00000152907.2	novel	0.95	21	1	21	1	y	1.00	8	0	8	0	y	0.98	89	2	89	2	y	1.00	34	0	34	0	y	0.96	54	2	54	2	y	1.00	33	0	33	0	y	0.96	45	2	45	2	y	1.00	37	0	37	0	y	1.00	11	0	11	0	y	1.00	45	0	45	0	y	0.93	27	2	27	2	y	1.00	23	0	23	0	y	ENSMUSG00000028980.15	H6pd	chr4	protein_coding	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)
novel_NIR_13558	chr4	150084483	150093208	-	150084483	150085607	5pMXE	ENSMUST00000152907.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	ENSMUSG00000028980.15	H6pd	chr4	protein_coding	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)
novel_NIR_13559	chr4	15022629	15026465	+	15022629;15025333	15025294;15026465	ES	ENSMUST00000129207.2	novel	0.00	0	7.0	0	9;5	n	0.00	0	3.5	0	3;4	n	0.00	0	9.0	0	9;9	n	0.00	0	6.0	0	6;6	n	0.00	0	4.0	0	3;5	n	0.00	0	2.0	0	1;3	n	0.52	8	7.5	8	6;9	y	0.12	1	7.0	1	5;9	n	0.00	0	4.5	0	4;5	n	0.00	0	12.5	0	10;15	n	0.00	0	5.0	0	5;5	n	0.67	3	1.5	3	1;2	y	ENSMUSG00000087241.2	Gm11844	chr4	lncRNA	predicted gene 11844
novel_NIR_13560	chr4	150322595	150323930	+	150321328	150323930	A5SS	ENSMUST00000150175.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000063524.14	Eno1	chr4	protein_coding	enolase 1, alpha non-neuron
novel_NIR_13561	chr4	150322595	150323930	+	150322290	150323930	A5SS	ENSMUST00000141931.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000063524.14	Eno1	chr4	protein_coding	enolase 1, alpha non-neuron
novel_NIR_13562	chr4	150456720	150490653	+	150366532	150490653	A5SS	ENSMUST00000105682.9	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.25	2	6	2	6	y	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.00	0	6	0	6	n	ENSMUSG00000039852.18	Rere	chr4	protein_coding	arginine glutamic acid dipeptide (RE) repeats
novel_NIR_13563	chr4	150456733	150490653	+	150366532	150490653	A5SS	ENSMUST00000105682.9	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.25	2	6	2	6	y	ENSMUSG00000039852.18	Rere	chr4	protein_coding	arginine glutamic acid dipeptide (RE) repeats
novel_NIR_13564	chr4	150491121	150513866	+	150491121	150515980	A3SS	ENSMUST00000105682.9	novel	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.09	1	10	1	10	n	0.00	0	8	0	8	n	0.00	0	15	0	15	n	0.11	1	8	1	8	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.40	2	3	2	3	y	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	ENSMUSG00000039852.18	Rere	chr4	protein_coding	arginine glutamic acid dipeptide (RE) repeats
novel_NIR_13565	chr4	150654753	150695147	+	150654753	150660607	A3SS&ES	ENSMUST00000137112.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039852.18	Rere	chr4	protein_coding	arginine glutamic acid dipeptide (RE) repeats
novel_NIR_13566	chr4	150654753	150695147	+	150654753	150695311	A3SS	ENSMUST00000105682.9	novel	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	18	0	18	n	0.22	2	7	2	7	y	0.00	0	21	0	21	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	22	0	22	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	ENSMUSG00000039852.18	Rere	chr4	protein_coding	arginine glutamic acid dipeptide (RE) repeats
novel_NIR_13567	chr4	150697203	150698176	+	150697203	150698182	A3SS	ENSMUST00000105682.9	novel	0.18	2	9	2	9	y	0.12	1	7	1	7	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.04	1	25	1	25	n	0.00	0	8	0	8	n	0.10	1	9	1	9	n	0.11	1	8	1	8	n	0.00	0	6	0	6	n	0.19	4	17	4	17	y	0.00	0	8	0	8	n	0.22	2	7	2	7	y	ENSMUSG00000039852.18	Rere	chr4	protein_coding	arginine glutamic acid dipeptide (RE) repeats
novel_NIR_13568	chr4	150727127	150727787	-	150727127	150727746	A5SS	ENSMUST00000037827.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039838.12	Slc45a1	chr4	protein_coding	solute carrier family 45, member 1
novel_NIR_13569	chr4	150948006	150949532	+	150938562	150949532	A5SS	ENSMUST00000073600.9	novel	0.00	0	36	0	36	n	0.00	0	44	0	44	n	0.09	4	41	4	41	n	0.23	6	20	6	20	y	0.15	7	40	7	40	y	0.18	4	18	4	18	y	0.00	0	24	0	24	n	0.28	5	13	5	13	y	0.00	0	18	0	18	n	0.00	0	45	0	45	n	0.00	0	4	0	4	n	0.00	0	27	0	27	n	ENSMUSG00000028967.11	Errfi1	chr4	protein_coding	ERBB receptor feedback inhibitor 1
novel_NIR_13570	chr4	150985551	150986398	-	150985551	150985996	5pMXE	ENSMUST00000132265.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.84	135	26	135	26	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000028964.15	Park7	chr4	protein_coding	Parkinson disease (autosomal recessive, early onset) 7
novel_NIR_13571	chr4	150985551	150989707	-	150985551	150985996	5pMXE	ENSMUST00000132265.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	26	0	26	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000028964.15	Park7	chr4	protein_coding	Parkinson disease (autosomal recessive, early onset) 7
novel_NIR_13572	chr4	150985551	150991497	-	150985551	150985996	5pMXE	ENSMUST00000132265.2	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	26	0	26	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000028964.15	Park7	chr4	protein_coding	Parkinson disease (autosomal recessive, early onset) 7
novel_NIR_13573	chr4	150985551	150998777	-	150985551	150985996	5pMXE	ENSMUST00000132265.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.04	1	26	1	26	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000028964.15	Park7	chr4	protein_coding	Parkinson disease (autosomal recessive, early onset) 7
novel_NIR_13574	chr4	150998454	150998777	-	150992880	150998777	A3SS	ENSMUST00000105675.8	novel	0.05	1	21	1	21	n	0.00	0	13	0	13	n	0.00	0	25	0	25	n	0.00	0	20	0	20	n	0.16	5	26	5	26	y	0.12	2	15	2	15	n	0.28	8	21	8	21	y	0.06	1	17	1	17	n	0.00	0	28	0	28	n	0.26	8	23	8	23	y	0.09	1	10	1	10	n	0.04	1	23	1	23	n	ENSMUSG00000028964.15	Park7	chr4	protein_coding	Parkinson disease (autosomal recessive, early onset) 7
novel_NIR_13575	chr4	151090414	151092685	-	151090416	151092685	A3SS	ENSMUST00000103204.11	novel	0.00	0	8	0	8	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	16	0	16	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.29	2	5	2	5	y	0.00	0	2	0	2	n	0.38	3	5	3	5	y	0.05	1	21	1	21	n	0.11	1	8	1	8	n	0.06	1	15	1	15	n	ENSMUSG00000028957.13	Per3	chr4	protein_coding	period circadian clock 3
novel_NIR_13576	chr4	151098229	151102356	-	151098226	151102356	A3SS	ENSMUST00000103204.11	novel	0.15	2	11	2	11	y	0.56	10	8	10	8	y	0.33	1	2	1	2	n	0.14	5	31	5	31	n	0.25	3	9	3	9	y	1.00	1	0	1	0	n	0.14	2	12	2	12	n	0.33	1	2	1	2	n	0.15	3	17	3	17	y	0.22	8	28	8	28	y	0.35	7	13	7	13	y	0.35	9	17	9	17	y	ENSMUSG00000028957.13	Per3	chr4	protein_coding	period circadian clock 3
novel_NIR_13577	chr4	151125930;151126755	151126707;151127133	-	151125930	151127133	cassetteExon	ENSMUST00000103204.11	novel	0.08	0.5	6	0;1	6	n	0.07	0.5	7	1;0	7	n	0.33	1.0	2	1;1	2	n	0.27	4.5	12	5;4	12	y	0.00	0.0	5	0;0	5	n	-	-	-	-	-	-	0.15	2.0	11	2;2	11	y	0.00	0.0	3	0;0	3	n	0.06	0.5	8	1;0	8	n	0.04	1.0	23	1;1	23	n	0.20	1.0	4	1;1	4	n	0.12	2.0	15	3;1	15	n	ENSMUSG00000028957.13	Per3	chr4	protein_coding	period circadian clock 3
novel_NIR_13578	chr4	15135017	15140225	-	15111302	15140225	A3SS	ENSMUST00000041606.14	novel	0.15	6	35	6	35	y	0.07	3	37	3	37	n	0.08	5	56	5	56	n	0.00	0	56	0	56	n	0.05	4	77	4	77	n	0.03	1	39	1	39	n	0.08	6	65	6	65	n	0.07	3	42	3	42	n	0.00	0	30	0	30	n	0.05	5	94	5	94	n	0.00	0	42	0	42	n	0.06	4	60	4	60	n	ENSMUSG00000040536.16	Necab1	chr4	protein_coding	N-terminal EF-hand calcium binding protein 1
novel_NIR_13579	chr4	151866588	151874742	-	151866588	151874865	A5SS	ENSMUST00000153938.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000014592.22	Camta1	chr4	protein_coding	calmodulin binding transcription activator 1
novel_NIR_13580	chr4	152058770	152060107	+	152058770	152062456	A3SS	ENSMUST00000139069.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039768.17	Dnajc11	chr4	protein_coding	DnaJ heat shock protein family (Hsp40) member C11
novel_NIR_13581	chr4	152078548	152079291	-	152078548	152080283	A5SS	ENSMUST00000055688.10	novel	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.11	1	8	1	8	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.18	2	9	2	9	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000047777.10	Phf13	chr4	protein_coding	PHD finger protein 13
novel_NIR_13582	chr4	152106676	152107153	-	152106691	152107153	A3SS	ENSMUST00000123696.8	novel	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.00	0	15	0	15	n	0.07	1	14	1	14	n	0.00	0	18	0	18	n	0.00	0	10	0	10	n	0.00	0	22	0	22	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.00	0	19	0	19	n	0.00	0	4	0	4	n	0.15	3	17	3	17	y	ENSMUSG00000028952.13	Zbtb48	chr4	protein_coding	zinc finger and BTB domain containing 48
novel_NIR_13583	chr4	152111516	152112024	-	152111516	152112000	A5SS	ENSMUST00000155389.8	novel	0.06	1	17	1	17	n	0.00	0	14	0	14	n	0.17	2	10	2	10	y	0.05	1	21	1	21	n	0.00	0	20	0	20	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.09	1	10	1	10	n	0.09	2	21	2	21	n	0.00	0	16	0	16	n	0.00	0	25	0	25	n	ENSMUSG00000028952.13	Zbtb48	chr4	protein_coding	zinc finger and BTB domain containing 48
novel_NIR_13584	chr4	152111516	152112024	-	152111516	152112022	A5SS	ENSMUST00000131935.2	novel	0.50	1	1	1	1	n	0.00	0	4	0	4	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000028952.13	Zbtb48	chr4	protein_coding	zinc finger and BTB domain containing 48
novel_NIR_13585	chr4	152111516	152112129	-	152111516	152112000	5pMXE	ENSMUST00000155389.8	novel	0.00	0	17	0	17	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.00	0	21	0	21	n	0.00	0	20	0	20	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.17	2	10	2	10	y	0.00	0	10	0	10	n	0.00	0	21	0	21	n	0.00	0	16	0	16	n	0.00	0	25	0	25	n	ENSMUSG00000028952.13	Zbtb48	chr4	protein_coding	zinc finger and BTB domain containing 48
novel_NIR_13586	chr4	152111516	152112129	-	152111516	152112022	5pMXE	ENSMUST00000131935.2	novel	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000028952.13	Zbtb48	chr4	protein_coding	zinc finger and BTB domain containing 48
novel_NIR_13587	chr4	152410965	152411938	+	152411816	152411938	5pMXE	ENSMUST00000126519.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000028936.16	Rpl22	chr4	protein_coding	ribosomal protein L22
novel_NIR_13588	chr4	152411312	152411938	+	152411816	152411938	5pMXE	ENSMUST00000126519.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000028936.16	Rpl22	chr4	protein_coding	ribosomal protein L22
novel_NIR_13589	chr4	152412042	152413605	+	152412042	152413717	A3SS	ENSMUST00000150485.2	novel	0.00	0	8	0	8	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	10	0	10	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.20	2	8	2	8	y	ENSMUSG00000028936.16	Rpl22	chr4	protein_coding	ribosomal protein L22
novel_NIR_13590	chr4	152412042	152414467	+	152412042	152413717	A3SS&ES	ENSMUST00000150485.2	novel	0.11	1	8	1	8	n	0.50	8	8	8	8	y	1.00	5	0	5	0	y	0.09	1	10	1	10	n	0.38	3	5	3	5	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.14	1	6	1	6	n	0.00	0	8	0	8	n	0.27	3	8	3	8	y	ENSMUSG00000028936.16	Rpl22	chr4	protein_coding	ribosomal protein L22
novel_NIR_13591	chr4	152413870	152414461	+	152413870	152414464	A3SS	ENSMUST00000150485.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	9	0	9	0	y	ENSMUSG00000028936.16	Rpl22	chr4	protein_coding	ribosomal protein L22
novel_NIR_13592	chr4	154041938	154044206	+	154041938	154044213	A3SS	ENSMUST00000133524.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000047613.11	A430005L14Rik	chr4	protein_coding	RIKEN cDNA A430005L14 gene
novel_NIR_13593	chr4	154050070	154052679	-	154050070	154053550	A5SS	ENSMUST00000030893.3	novel	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.22	2	7	2	7	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	ENSMUSG00000029027.10	Dffb	chr4	protein_coding	DNA fragmentation factor, beta subunit
novel_NIR_13594	chr4	154056517	154057237	-	154056117	154057237	A3SS	ENSMUST00000030893.3	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.33	1	2	1	2	n	ENSMUSG00000029027.10	Dffb	chr4	protein_coding	DNA fragmentation factor, beta subunit
novel_NIR_13595	chr4	154056517	154057237	-	154057135	154057237	A3SS&ES	ENSMUST00000133607.9	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	ENSMUSG00000029027.10	Dffb	chr4	protein_coding	DNA fragmentation factor, beta subunit
novel_NIR_13596	chr4	154057397	154059026	-	154057425	154059026	A3SS	ENSMUST00000030893.3	novel	0.00	0	6	0	6	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	ENSMUSG00000029027.10	Dffb	chr4	protein_coding	DNA fragmentation factor, beta subunit
novel_NIR_13597	chr4	154066229	154068054	+	154066229	154067521	A3SS&ES	ENSMUST00000047497.15	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	18	0	18	n	0.15	2	11	2	11	y	0.00	0	18	0	18	n	0.00	0	1	0	1	n	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	ENSMUSG00000039523.17	Cep104	chr4	protein_coding	centrosomal protein 104
novel_NIR_13598	chr4	154104342	154104876	+	154104342	154104894	A3SS	ENSMUST00000163672.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	ENSMUSG00000029028.15	Lrrc47	chr4	protein_coding	leucine rich repeat containing 47
novel_NIR_13599	chr4	154243022	154244498	-	154243022	154244542	A5SS	ENSMUST00000134492.2	novel	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.60	3	2	3	2	y	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	1.00	2	0	2	0	y	ENSMUSG00000029030.15	Tprgl	chr4	protein_coding	transformation related protein 63 regulated like
novel_NIR_13600	chr4	154354987	154356068	+	154354987;154355208	154355080;154356068	ES	ENSMUST00000030897.15	novel	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	0.00	0	1.0	0	0;2	n	-	-	-	-	-	-	0.00	0	4.0	0	5;3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1.5	0	0;3	n	0.00	0	2.5	0	5;0	n	0.86	3	0.5	3	1;0	y	ENSMUSG00000057751.15	Megf6	chr4	protein_coding	multiple EGF-like-domains 6
novel_NIR_13601	chr4	154354987	154356068	+	154355208	154356068	A5SS&ES	ENSMUST00000152159.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000057751.15	Megf6	chr4	protein_coding	multiple EGF-like-domains 6
novel_NIR_13602	chr4	154377399	154381930	-	154377399	154384282	A5SS	ENSMUST00000144145.8	novel	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	-	-	-	-	-	-	ENSMUSG00000029032.13	Arhgef16	chr4	protein_coding	Rho guanine nucleotide exchange factor (GEF) 16
novel_NIR_13603	chr4	155056687	155056887	+	155056687	155056926	A3SS	ENSMUST00000030931.11	novel	0.30	3	7	3	7	y	0.00	0	15	0	15	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.10	2	19	2	19	n	0.27	3	8	3	8	y	0.09	2	20	2	20	n	0.25	1	3	1	3	n	0.07	1	14	1	14	n	0.33	4	8	4	8	y	0.00	0	15	0	15	n	0.10	1	9	1	9	n	ENSMUSG00000029056.14	Pank4	chr4	protein_coding	pantothenate kinase 4
novel_NIR_13604	chr4	155139206	155160046	-	155139206	155141135	5pMXE	ENSMUST00000131173.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029055.18	Plch2	chr4	protein_coding	phospholipase C, eta 2
novel_NIR_13605	chr4	155152360	155152647	+	155152360	155153120	A3SS	ENSMUST00000103180.4	novel	0.00	0	12	0	12	n	0.09	1	10	1	10	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.14	2	12	2	12	n	0.33	2	4	2	4	y	0.00	0	17	0	17	n	0.27	3	8	3	8	y	0.00	0	11	0	11	n	0.00	0	17	0	17	n	0.00	0	14	0	14	n	0.00	0	16	0	16	n	ENSMUSG00000029047.14	Pex10	chr4	protein_coding	peroxisomal biogenesis factor 10
novel_NIR_13606	chr4	155167205	155170662	-	155167693	155170662	A3SS&ES	ENSMUST00000125357.2	novel	0.50	7	7	7	7	y	0.29	4	10	4	10	y	0.20	5	20	5	20	y	0.21	4	15	4	15	y	0.10	3	28	3	28	n	0.04	1	22	1	22	n	0.61	14	9	14	9	y	0.44	4	5	4	5	y	0.09	1	10	1	10	n	0.30	8	19	8	19	y	0.00	0	8	0	8	n	0.10	1	9	1	9	n	ENSMUSG00000029048.4	Rer1	chr4	protein_coding	retention in endoplasmic reticulum sorting receptor 1
novel_NIR_13607	chr4	155167205	155170662	-	155167774	155170662	A3SS&ES	ENSMUST00000149796.2	novel	0.22	7	25	7	25	y	0.09	4	43	4	43	n	0.06	5	72	5	72	n	0.09	4	42	4	42	n	0.04	3	74	3	74	n	0.03	1	37	1	37	n	0.22	14	51	14	51	y	0.09	4	42	4	42	n	0.02	1	43	1	43	n	0.15	8	47	8	47	y	0.00	0	40	0	40	n	0.02	1	50	1	50	n	ENSMUSG00000029048.4	Rer1	chr4	protein_coding	retention in endoplasmic reticulum sorting receptor 1
novel_NIR_13608	chr4	155167211	155167589	-	155167211	155167566	A5SS	ENSMUST00000149796.2	novel	0.01	1	67	1	67	n	0.17	9	44	9	44	y	0.12	17	120	17	120	n	0.03	2	76	2	76	n	0.05	7	136	7	136	n	0.06	4	66	4	66	n	0.05	6	115	6	115	n	0.05	3	56	3	56	n	0.06	3	51	3	51	n	0.12	12	87	12	87	n	0.02	1	57	1	57	n	0.09	6	58	6	58	n	ENSMUSG00000029048.4	Rer1	chr4	protein_coding	retention in endoplasmic reticulum sorting receptor 1
novel_NIR_13609	chr4	155167771	155170662	-	155167693	155170662	A3SS	ENSMUST00000125357.2	novel	0.22	2	7	2	7	y	0.41	7	10	7	10	y	0.47	18	20	18	20	y	0.25	5	15	5	15	y	0.33	14	28	14	28	y	0.33	11	22	11	22	y	0.36	5	9	5	9	y	0.67	10	5	10	5	y	0.38	6	10	6	10	y	0.24	6	19	6	19	y	0.53	9	8	9	8	y	0.55	11	9	11	9	y	ENSMUSG00000029048.4	Rer1	chr4	protein_coding	retention in endoplasmic reticulum sorting receptor 1
novel_NIR_13610	chr4	155167771	155170662	-	155167774	155170662	A3SS	ENSMUST00000149796.2	novel	0.07	2	25	2	25	n	0.14	7	43	7	43	n	0.20	18	72	18	72	y	0.11	5	42	5	42	n	0.16	14	74	14	74	y	0.23	11	37	11	37	y	0.09	5	51	5	51	n	0.19	10	42	10	42	y	0.12	6	43	6	43	n	0.11	6	47	6	47	n	0.18	9	40	9	40	y	0.18	11	50	11	50	y	ENSMUSG00000029048.4	Rer1	chr4	protein_coding	retention in endoplasmic reticulum sorting receptor 1
novel_NIR_13611	chr4	155171511	155171878	+	155171138	155171878	A5SS	ENSMUST00000132367.8	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.27	3	8	3	8	y	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.75	3	1	3	1	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000029049.15	Morn1	chr4	protein_coding	MORN repeat containing 1
novel_NIR_13612	chr4	155171511	155171878	+	155171344	155171878	A5SS	ENSMUST00000155375.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.60	3	2	3	2	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029049.15	Morn1	chr4	protein_coding	MORN repeat containing 1
novel_NIR_13613	chr4	155176816	155185723	+	155176816	155177519	3pMXE	ENSMUST00000155775.8	novel	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.18	2	9	2	9	y	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	ENSMUSG00000029049.15	Morn1	chr4	protein_coding	MORN repeat containing 1
novel_NIR_13614	chr4	155176816	155185723	+	155176816;155177606	155177519;155185723	ES	ENSMUST00000132367.8	novel	0.00	0	7.5	0	9;6	n	0.00	0	4.0	0	5;3	n	0.00	0	6.0	0	8;4	n	0.00	0	4.5	0	6;3	n	0.17	2	9.5	2	9;10	y	0.00	0	4.0	0	6;2	n	0.00	0	5.5	0	9;2	n	0.00	0	3.5	0	4;3	n	0.00	0	5.5	0	7;4	n	0.00	0	14.0	0	14;14	n	0.00	0	5.0	0	7;3	n	0.00	0	6.5	0	8;5	n	ENSMUSG00000029049.15	Morn1	chr4	protein_coding	MORN repeat containing 1
novel_NIR_13615	chr4	155185819	155195385	+	155185819;155186657	155186547;155195385	ES	ENSMUST00000030915.11	novel	0.00	0	5.5	0	4;7	n	0.00	0	3.5	0	2;5	n	0.00	0	5.5	0	2;9	n	0.00	0	4.0	0	4;4	n	0.36	4	7.0	4	5;9	y	0.00	0	3.0	0	2;4	n	0.14	1	6.0	1	4;8	n	0.57	2	1.5	2	0;3	y	0.18	1	4.5	1	3;6	n	0.00	0	6.5	0	3;10	n	0.00	0	4.0	0	4;4	n	0.00	0	3.5	0	2;5	n	ENSMUSG00000029049.15	Morn1	chr4	protein_coding	MORN repeat containing 1
novel_NIR_13616	chr4	155185819	155195385	+	155186657	155195385	5pMXE	ENSMUST00000151710.8	novel	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.31	4	9	4	9	y	0.00	0	4	0	4	n	0.11	1	8	1	8	n	0.40	2	3	2	3	y	0.14	1	6	1	6	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	ENSMUSG00000029049.15	Morn1	chr4	protein_coding	MORN repeat containing 1
novel_NIR_13617	chr4	155245152	155306009	-	155245152;155245413	155245291;155306009	ES	ENSMUST00000084103.10	novel	0.23	6	20.5	6	20;21	y	0.23	6	20.5	6	22;19	y	0.14	5	29.5	5	30;29	n	0.21	7	26.5	7	29;24	y	0.17	5	24.5	5	27;22	y	0.00	0	19.5	0	21;18	n	0.12	4	30.5	4	37;24	n	0.33	9	18.0	9	19;17	y	0.22	5	18.0	5	20;16	y	0.33	13	27.0	13	24;30	y	0.00	0	17.5	0	26;9	n	0.15	4	22.5	4	32;13	y	ENSMUSG00000029050.16	Ski	chr4	protein_coding	ski sarcoma viral oncogene homolog (avian)
novel_NIR_13618	chr4	155245413	155246374	-	155245413	155272714	A5SS	ENSMUST00000129314.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029050.16	Ski	chr4	protein_coding	ski sarcoma viral oncogene homolog (avian)
novel_NIR_13619	chr4	155499335	155506530	-	155499335	155506090	5pMXE	ENSMUST00000166921.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000084803.9	5830444B04Rik	chr4	lncRNA	RIKEN cDNA 5830444B04 gene
novel_NIR_13620	chr4	155504487	155506090	-	155499335	155506090	A3SS	ENSMUST00000166921.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	3	3	3	3	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000084803.9	5830444B04Rik	chr4	lncRNA	RIKEN cDNA 5830444B04 gene
novel_NIR_13621	chr4	155646912	155661185	+	155648626	155661185	5pMXE	ENSMUST00000135429.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029063.17	Nadk	chr4	protein_coding	NAD kinase
novel_NIR_13622	chr4	155648436	155661457	+	155648436	155661185	A3SS	ENSMUST00000147062.2	novel	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	17	0	17	n	0.00	0	15	0	15	n	0.00	0	28	0	28	n	0.00	0	10	0	10	n	0.00	0	21	0	21	n	0.00	0	9	0	9	n	0.00	0	16	0	16	n	0.00	0	30	0	30	n	0.00	0	14	0	14	n	0.19	3	13	3	13	y	ENSMUSG00000029063.17	Nadk	chr4	protein_coding	NAD kinase
novel_NIR_13623	chr4	155648436	155663768	+	155648436	155661185	3pMXE	ENSMUST00000147062.2	novel	0.15	2	11	2	11	y	0.00	0	10	0	10	n	0.00	0	17	0	17	n	0.57	20	15	20	15	y	0.28	11	28	11	28	y	0.23	3	10	3	10	y	0.00	0	21	0	21	n	0.00	0	9	0	9	n	0.00	0	16	0	16	n	0.21	8	30	8	30	y	0.30	6	14	6	14	y	0.00	0	13	0	13	n	ENSMUSG00000029063.17	Nadk	chr4	protein_coding	NAD kinase
novel_NIR_13624	chr4	155672241	155672321	+	155672241	155673067	A3SS	ENSMUST00000152297.2	novel	0.00	0	20	0	20	n	0.00	0	15	0	15	n	0.00	0	2	0	2	n	0.44	11	14	11	14	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	ENSMUSG00000029063.17	Nadk	chr4	protein_coding	NAD kinase
novel_NIR_13625	chr4	155709556	155709642	+	155709398	155709642	A5SS	ENSMUST00000135550.8	novel	0.20	3	12	3	12	y	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.00	0	15	0	15	n	ENSMUSG00000029062.15	Cdk11b	chr4	protein_coding	cyclin-dependent kinase 11B
novel_NIR_13626	chr4	155735806	155736442	-	155735806	155735888	A5SS	ENSMUST00000156906.2	novel	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	ENSMUSG00000029061.3	Mmp23	chr4	protein_coding	matrix metallopeptidase 23
novel_NIR_13627	chr4	155735806	155736442	-	155735806;155736052	155735888;155736442	ES	ENSMUST00000030937.2	novel	0.00	0	1.5	0	1;2	n	0.57	2	1.5	2	2;1	y	0.00	0	1.5	0	3;0	n	0.00	0	0.5	0	0;1	n	0.00	0	4.0	0	7;1	n	0.00	0	0.5	0	0;1	n	0.00	0	5.5	0	6;5	n	0.00	0	1.5	0	2;1	n	0.00	0	0.5	0	1;0	n	0.00	0	4.5	0	5;4	n	0.00	0	4.5	0	5;4	n	0.00	0	1.5	0	2;1	n	ENSMUSG00000029061.3	Mmp23	chr4	protein_coding	matrix metallopeptidase 23
novel_NIR_13628	chr4	155739795	155739979	-	155739727	155739979	A3SS	ENSMUST00000128204.8	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000029060.18	Mib2	chr4	protein_coding	mindbomb E3 ubiquitin protein ligase 2
novel_NIR_13629	chr4	155743446	155743580	-	155742416	155743580	A3SS	ENSMUST00000103176.10	novel	0.00	0	4	0	4	n	0.47	7	8	7	8	y	0.67	6	3	6	3	y	0.67	12	6	12	6	y	0.44	4	5	4	5	y	0.25	1	3	1	3	n	0.71	12	5	12	5	y	0.38	3	5	3	5	y	0.40	2	3	2	3	y	0.47	9	10	9	10	y	0.70	7	3	7	3	y	0.64	7	4	7	4	y	ENSMUSG00000029060.18	Mib2	chr4	protein_coding	mindbomb E3 ubiquitin protein ligase 2
novel_NIR_13630	chr4	155743446	155743580	-	155743458	155743580	A3SS	ENSMUST00000141108.2	novel	0.00	0	12	0	12	n	0.32	7	15	7	15	y	0.27	6	16	6	16	y	0.55	12	10	12	10	y	0.22	4	14	4	14	y	0.14	1	6	1	6	n	0.55	12	10	12	10	y	0.30	3	7	3	7	y	0.67	2	1	2	1	y	0.38	9	15	9	15	y	0.37	7	12	7	12	y	0.33	7	14	7	14	y	ENSMUSG00000029060.18	Mib2	chr4	protein_coding	mindbomb E3 ubiquitin protein ligase 2
novel_NIR_13631	chr4	155743477	155743580	-	155742416	155743580	A3SS	ENSMUST00000103176.10	novel	0.00	0	4	0	4	n	0.20	2	8	2	8	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000029060.18	Mib2	chr4	protein_coding	mindbomb E3 ubiquitin protein ligase 2
novel_NIR_13632	chr4	155835104	155835325	-	155835050	155835325	A3SS	ENSMUST00000175679.8	novel	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000029036.19	Atad3a	chr4	protein_coding	ATPase family, AAA domain containing 3A
novel_NIR_13633	chr4	155839499	155840136	-	155839309	155840136	A3SS	ENSMUST00000184913.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	ENSMUSG00000029036.19	Atad3a	chr4	protein_coding	ATPase family, AAA domain containing 3A
novel_NIR_13634	chr4	155845743	155847219	+	155845743	155845842	3pMXE	ENSMUST00000067628.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000054514.4	Atad3aos	chr4	lncRNA	ATPase family, AAA domain containing 3A, opposite strand
novel_NIR_13635	chr4	155845743	155847219	+	155845743	155847827	A3SS	ENSMUST00000155010.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000054514.4	Atad3aos	chr4	lncRNA	ATPase family, AAA domain containing 3A, opposite strand
novel_NIR_13636	chr4	155845743	155847219	+	155845743	155851605	A3SS	ENSMUST00000174185.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000054514.4	Atad3aos	chr4	lncRNA	ATPase family, AAA domain containing 3A, opposite strand
novel_NIR_13637	chr4	155845971	155847827	+	155845743	155847827	A5SS	ENSMUST00000155010.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	3	0	3	n	ENSMUSG00000054514.4	Atad3aos	chr4	lncRNA	ATPase family, AAA domain containing 3A, opposite strand
novel_NIR_13638	chr4	155845971	155847827	+	155846234	155847827	A5SS	ENSMUST00000150777.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000054514.4	Atad3aos	chr4	lncRNA	ATPase family, AAA domain containing 3A, opposite strand
novel_NIR_13639	chr4	155846716	155847827	+	155845743	155847827	A5SS	ENSMUST00000155010.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.75	3	1	3	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.62	5	3	5	3	y	ENSMUSG00000054514.4	Atad3aos	chr4	lncRNA	ATPase family, AAA domain containing 3A, opposite strand
novel_NIR_13640	chr4	155846716	155847827	+	155846234	155847827	A5SS	ENSMUST00000150777.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	y	ENSMUSG00000054514.4	Atad3aos	chr4	lncRNA	ATPase family, AAA domain containing 3A, opposite strand
novel_NIR_13641	chr4	155891099	155891365	+	155888199	155891365	A5SS	ENSMUST00000185148.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.33	1	2	1	2	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000029066.13	Mrpl20	chr4	protein_coding	mitochondrial ribosomal protein L20
novel_NIR_13642	chr4	155902444	155903044	+	155902444	155904786	A3SS	ENSMUST00000030944.11	novel	0.16	3	16	3	16	y	0.09	1	10	1	10	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.20	5	20	5	20	y	0.15	2	11	2	11	y	0.31	4	9	4	9	y	0.36	5	9	5	9	y	0.00	0	16	0	16	n	0.62	8	5	8	5	y	0.30	6	14	6	14	y	0.00	0	12	0	12	n	ENSMUSG00000029068.17	Ccnl2	chr4	protein_coding	cyclin L2
novel_NIR_13643	chr4	155903009	155904786	+	155903121	155904786	A5SS	ENSMUST00000126346.2	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.40	2	3	2	3	y	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000029068.17	Ccnl2	chr4	protein_coding	cyclin L2
novel_NIR_13644	chr4	155903121	155903327	+	155903121	155904786	A3SS	ENSMUST00000126346.2	novel	-	-	-	-	-	-	0.62	5	3	5	3	y	0.64	9	5	9	5	y	0.67	8	4	8	4	y	0.85	17	3	17	3	y	0.33	2	4	2	4	y	0.50	4	4	4	4	y	0.25	1	3	1	3	n	1.00	1	0	1	0	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000029068.17	Ccnl2	chr4	protein_coding	cyclin L2
novel_NIR_13645	chr4	155903121;155904423	155904163;155904786	+	155903121	155904786	cassetteExon	ENSMUST00000126346.2	novel	1.00	1.0	0	0;2	0	n	0.33	1.5	3	0;3	3	n	0.47	4.5	5	1;8	5	n	0.00	0.0	4	0;0	4	n	0.50	3.0	3	2;4	3	y	0.56	5.0	4	0;10	4	n	0.47	3.5	4	0;7	4	n	0.33	1.5	3	1;2	3	n	1.00	4.0	0	1;7	0	n	0.20	1.0	4	0;2	4	n	0.75	6.0	2	2;10	2	y	0.75	6.0	2	0;12	2	n	ENSMUSG00000029068.17	Ccnl2	chr4	protein_coding	cyclin L2
novel_NIR_13646	chr4	155904423	155904786	+	155902444	155904786	A5SS	ENSMUST00000030944.11	novel	0.11	2	16	2	16	n	0.23	3	10	3	10	y	0.42	8	11	8	11	y	0.00	0	9	0	9	n	0.17	4	20	4	20	y	0.48	10	11	10	11	y	0.44	7	9	7	9	y	0.18	2	9	2	9	y	0.30	7	16	7	16	y	0.29	2	5	2	5	y	0.42	10	14	10	14	y	0.50	12	12	12	12	y	ENSMUSG00000029068.17	Ccnl2	chr4	protein_coding	cyclin L2
novel_NIR_13647	chr4	155904423	155904786	+	155903121	155904786	A5SS	ENSMUST00000126346.2	novel	1.00	2	0	2	0	y	0.50	3	3	3	3	y	0.62	8	5	8	5	n	0.00	0	4	0	4	n	0.57	4	3	4	3	n	0.71	10	4	10	4	y	0.64	7	4	7	4	y	0.40	2	3	2	3	n	1.00	7	0	7	0	n	0.33	2	4	2	4	y	0.83	10	2	10	2	n	0.86	12	2	12	2	y	ENSMUSG00000029068.17	Ccnl2	chr4	protein_coding	cyclin L2
novel_NIR_13648	chr4	155940001	155940547	+	155940001	155940589	A3SS	ENSMUST00000129450.2	novel	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.08	1	12	1	12	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	16	0	16	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	15	0	15	n	0.27	3	8	3	8	y	0.29	2	5	2	5	y	ENSMUSG00000029071.17	Dvl1	chr4	protein_coding	dishevelled segment polarity protein 1
novel_NIR_13649	chr4	155940076	155940547	+	155940076	155941953	A3SS	ENSMUST00000133184.8	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	10	0	10	0	y	1.00	1	0	1	0	n	1.00	6	0	6	0	y	1.00	2	0	2	0	y	1.00	7	0	7	0	y	1.00	5	0	5	0	y	1.00	8	0	8	0	y	1.00	7	0	7	0	y	1.00	5	0	5	0	y	1.00	9	0	9	0	y	ENSMUSG00000029071.17	Dvl1	chr4	protein_coding	dishevelled segment polarity protein 1
novel_NIR_13650	chr4	155940076	155940651	+	155940076	155941953	A3SS	ENSMUST00000133184.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029071.17	Dvl1	chr4	protein_coding	dishevelled segment polarity protein 1
novel_NIR_13651	chr4	155941277	155941862	+	155941277	155941953	A3SS	ENSMUST00000143457.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000029071.17	Dvl1	chr4	protein_coding	dishevelled segment polarity protein 1
novel_NIR_13652	chr4	155974363	155974956	-	155974180	155974956	A3SS	ENSMUST00000097737.5	novel	0.10	2	19	2	19	n	0.06	1	16	1	16	n	0.29	2	5	2	5	y	0.00	0	14	0	14	n	0.06	1	16	1	16	n	0.00	0	4	0	4	n	0.22	6	21	6	21	y	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.03	1	28	1	28	n	0.00	0	15	0	15	n	0.06	1	17	1	17	n	ENSMUSG00000051557.16	Pusl1	chr4	protein_coding	pseudouridylate synthase-like 1
novel_NIR_13653	chr4	155987690	155987772	+	155987690	155987768	A3SS	ENSMUST00000105584.10	novel	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.20	2	8	2	8	y	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	ENSMUSG00000029033.17	Acap3	chr4	protein_coding	ArfGAP with coiled-coil, ankyrin repeat and PH domains 3
novel_NIR_13654	chr4	156047443	156049000	+	156047194	156049000	A5SS	ENSMUST00000024338.5	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.75	3	1	3	1	y	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.14	1	6	1	6	n	0.00	0	7	0	7	n	ENSMUSG00000023571.5	C1qtnf12	chr4	protein_coding	C1q and tumor necrosis factor related 12
novel_NIR_13655	chr4	156085240	156093249	+	156085240	156086930	3pMXE	ENSMUST00000097734.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000029076.15	Sdf4	chr4	protein_coding	stromal cell derived factor 4
novel_NIR_13656	chr4	156094345	156098685	+	156098463	156098685	5pMXE	ENSMUST00000030952.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	12	0	12	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029075.7	Tnfrsf4	chr4	protein_coding	tumor necrosis factor receptor superfamily, member 4
novel_NIR_13657	chr4	156204629	156206390	+	156203696	156206390	A5SS	ENSMUST00000072554.13	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.30	3	7	3	7	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	ENSMUSG00000059939.14	9430015G10Rik	chr4	protein_coding	RIKEN cDNA 9430015G10 gene
novel_NIR_13658	chr4	156258459	156258634	-	156258547	156258634	A3SS	ENSMUST00000105574.9	novel	0.00	0	24	0	24	n	0.22	4	14	4	14	y	0.00	0	26	0	26	n	0.00	0	19	0	19	n	0.00	0	36	0	36	n	0.00	0	13	0	13	n	0.00	0	30	0	30	n	0.00	0	33	0	33	n	0.00	0	21	0	21	n	0.00	0	34	0	34	n	0.00	0	26	0	26	n	0.00	0	44	0	44	n	ENSMUSG00000041936.19	Agrn	chr4	protein_coding	agrin
novel_NIR_13659	chr4	156261898	156262279	-	156261898	156262886	A5SS	ENSMUST00000105574.9	novel	0.00	0	15	0	15	n	0.25	1	3	1	3	n	0.00	0	22	0	22	n	0.11	3	25	3	25	n	0.11	3	25	3	25	n	0.08	1	11	1	11	n	0.24	5	16	5	16	y	0.20	2	8	2	8	y	0.17	2	10	2	10	y	0.04	1	24	1	24	n	0.20	3	12	3	12	y	0.05	1	18	1	18	n	ENSMUSG00000041936.19	Agrn	chr4	protein_coding	agrin
novel_NIR_13660	chr4	156288266	156288430	+	156288266	156292685	A3SS	ENSMUST00000238370.2	novel	0.75	3	1	3	1	y	1.00	7	0	7	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.82	9	2	9	2	y	1.00	2	0	2	0	y	0.75	3	1	3	1	y	1.00	3	0	3	0	y	0.50	1	1	1	1	n	0.33	1	2	1	2	n	1.00	2	0	2	0	y	ENSMUSG00000078349.4	AW011738	chr4	lncRNA	expressed sequence AW011738
novel_NIR_13661	chr4	156314719	156314939	-	156314719	156314962	A5SS	ENSMUST00000105569.5	novel	0.10	1	9	1	9	n	0.20	2	8	2	8	y	0.00	0	2	0	2	n	0.18	2	9	2	9	y	0.11	1	8	1	8	n	-	-	-	-	-	-	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.14	1	6	1	6	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	ENSMUSG00002076083.1	Klhl17	chr4	protein_coding	--
novel_NIR_13662	chr4	156314719	156314939	-	156314719	156315358	A5SS	ENSMUST00020183129.1	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00002076083.1	Klhl17	chr4	protein_coding	--
novel_NIR_13663	chr4	156315431	156315561	-	156315431	156315542	A5SS	ENSMUST00000105569.5	novel	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.08	1	12	1	12	n	0.00	0	2	0	2	n	0.00	0	14	0	14	n	0.33	1	2	1	2	n	0.17	2	10	2	10	y	0.07	1	13	1	13	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	ENSMUSG00002076083.1	Klhl17	chr4	protein_coding	--
novel_NIR_13664	chr4	156315431	156315561	-	156315461	156315561	A3SS	ENSMUST00020183325.1	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00002076083.1	Klhl17	chr4	protein_coding	--
novel_NIR_13665	chr4	156315461	156315542	-	156315461	156315561	A5SS	ENSMUST00020183325.1	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00002076083.1	Klhl17	chr4	protein_coding	--
novel_NIR_13666	chr4	156315630	156316001	-	156315630	156316004	A5SS	ENSMUST00000105569.5	novel	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.06	1	15	1	15	n	0.00	0	21	0	21	n	0.67	2	1	2	1	y	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.09	2	20	2	20	n	0.00	0	26	0	26	n	0.08	1	11	1	11	n	0.00	0	14	0	14	n	ENSMUSG00002076083.1	Klhl17	chr4	protein_coding	--
novel_NIR_13667	chr4	156325170	156325880	+	156325170	156325770	A3SS	ENSMUST00000179886.3	novel	0.12	5	38	5	38	n	0.06	3	48	3	48	n	0.06	3	51	3	51	n	0.08	4	47	4	47	n	0.07	4	54	4	54	n	0.06	2	34	2	34	n	0.05	3	62	3	62	n	0.16	6	31	6	31	y	0.05	2	41	2	41	n	0.10	6	54	6	54	n	0.00	0	59	0	59	n	0.02	1	53	1	53	n	ENSMUSG00000095567.9	Noc2l	chr4	protein_coding	NOC2 like nucleolar associated transcriptional repressor
novel_NIR_13668	chr4	15933095	15937254	-	15933095	15944463	A5SS	ENSMUST00000150464.2	novel	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.60	3	2	3	2	y	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028223.9	Decr1	chr4	protein_coding	2,4-dienoyl CoA reductase 1, mitochondrial
novel_NIR_13669	chr4	15944603	15945283	-	15944603	15945170	5pMXE	ENSMUST00000150464.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	6	0	6	0	y	1.00	3	0	3	0	y	1.00	6	0	6	0	y	1.00	2	0	2	0	y	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	5	0	5	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	ENSMUSG00000028223.9	Decr1	chr4	protein_coding	2,4-dienoyl CoA reductase 1, mitochondrial
novel_NIR_13670	chr4	16008755	16013516	-	16008755	16013687	A5SS	ENSMUST00000037198.10	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.25	2	6	2	6	y	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.38	3	5	3	5	y	ENSMUSG00000041153.10	Osgin2	chr4	protein_coding	oxidative stress induced growth inhibitor family member 2
novel_NIR_13671	chr4	16155190	16157572	-	16155190	16158277	A5SS	ENSMUST00000037035.12	novel	0.22	2	7	2	7	n	0.26	5	14	5	14	y	0.22	6	21	6	21	n	0.11	1	8	1	8	n	0.32	6	13	6	13	n	0.15	2	11	2	11	n	0.60	6	4	6	4	n	0.10	1	9	1	9	n	0.29	2	5	2	5	n	0.15	3	17	3	17	y	0.21	3	11	3	11	n	0.35	7	13	7	13	n	ENSMUSG00000041135.16	Ripk2	chr4	protein_coding	receptor (TNFRSF)-interacting serine-threonine kinase 2
novel_NIR_13672	chr4	16155190;16157648	16157572;16158277	-	16155190	16158277	cassetteExon	ENSMUST00000037035.12	novel	0.18	1.5	7	2;1	7	n	0.15	2.5	14	5;0	14	n	0.21	5.5	21	6;5	21	y	0.16	1.5	8	1;2	8	n	0.24	4.0	13	6;2	13	y	0.12	1.5	11	2;1	11	n	0.50	4.0	4	6;2	4	y	0.22	2.5	9	1;4	9	n	0.23	1.5	5	2;1	5	n	0.08	1.5	17	3;0	17	n	0.15	2.0	11	3;1	11	n	0.24	4.0	13	7;1	13	n	ENSMUSG00000041135.16	Ripk2	chr4	protein_coding	receptor (TNFRSF)-interacting serine-threonine kinase 2
novel_NIR_13673	chr4	16164191	16172682	+	16164191	16172825	A3SS	ENSMUST00000151122.2	novel	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.00	0	15	0	15	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	ENSMUSG00000085112.2	A530072M11Rik	chr4	lncRNA	RIKEN cDNA gene A530072M11
novel_NIR_13674	chr4	16164191	16192161	+	16164191	16172825	A3SS&ES	ENSMUST00000151122.2	novel	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.00	0	15	0	15	n	0.67	2	1	2	1	y	0.00	0	7	0	7	n	ENSMUSG00000085112.2	A530072M11Rik	chr4	lncRNA	RIKEN cDNA gene A530072M11
novel_NIR_13675	chr4	16164191	16210861	+	16164191;16172984	16172825;16210861	ES	ENSMUST00000151122.2	novel	0.00	0	2.5	0	3;2	n	0.00	0	2.5	0	5;0	n	0.00	0	2.5	0	5;0	n	0.00	0	1.0	0	1;1	n	0.38	4	6.5	4	8;5	y	0.25	1	3.0	1	5;1	n	0.00	0	1.0	0	2;0	n	0.00	0	2.5	0	4;1	n	0.00	0	2.5	0	3;2	n	0.00	0	9.5	0	15;4	n	0.00	0	0.5	0	1;0	n	0.00	0	3.5	0	7;0	n	ENSMUSG00000085112.2	A530072M11Rik	chr4	lncRNA	RIKEN cDNA gene A530072M11
novel_NIR_13676	chr4	16172984	16192161	+	16172984	16210861	A3SS	ENSMUST00000151122.2	novel	0.67	4	2	4	2	y	1.00	3	0	3	0	y	-	-	-	-	-	-	0.75	3	1	3	1	y	0.50	5	5	5	5	y	0.86	6	1	6	1	y	1.00	4	0	4	0	y	0.67	2	1	2	1	y	0.71	5	2	5	2	y	0.50	4	4	4	4	y	1.00	5	0	5	0	y	1.00	2	0	2	0	y	ENSMUSG00000085112.2	A530072M11Rik	chr4	lncRNA	RIKEN cDNA gene A530072M11
novel_NIR_13677	chr4	16210910	16217091	+	16210910	16241965	A3SS	ENSMUST00000151122.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000085112.2	A530072M11Rik	chr4	lncRNA	RIKEN cDNA gene A530072M11
novel_NIR_13678	chr4	19595159	19601356	+	19595159	19598471	3pMXE	ENSMUST00000108253.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	ENSMUSG00000028229.12	Rmdn1	chr4	protein_coding	regulator of microtubule dynamics 1
novel_NIR_13679	chr4	19608941	19611306	+	19608941	19631786	A3SS	ENSMUST00000108250.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000078772.3	Gm12353	chr4	protein_coding	predicted gene 12353
novel_NIR_13680	chr4	19672527	19673156	-	19672543	19673156	A3SS	ENSMUST00000108246.9	novel	0.00	0	55	0	55	n	0.03	1	39	1	39	n	0.21	13	50	13	50	y	0.07	6	83	6	83	n	0.09	11	118	11	118	n	0.08	3	35	3	35	n	0.05	4	76	4	76	n	0.03	1	32	1	32	n	0.08	4	46	4	46	n	0.07	7	93	7	93	n	0.02	1	58	1	58	n	0.06	5	83	5	83	n	ENSMUSG00000041058.16	Wwp1	chr4	protein_coding	WW domain containing E3 ubiquitin protein ligase 1
novel_NIR_13681	chr4	19719657	19720142	-	19719660	19720142	A3SS	ENSMUST00000131133.2	novel	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.07	1	14	1	14	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.18	2	9	2	9	y	0.07	1	13	1	13	n	ENSMUSG00000086071.8	Gm12354	chr4	lncRNA	predicted gene 12354
novel_NIR_13682	chr4	19982123	19983188	-	19979820	19983188	A3SS	ENSMUST00000125909.3	novel	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000086332.3	4930480G23Rik	chr4	transcribed_unitary_pseudogene	RIKEN cDNA 4930480G23 gene
novel_NIR_13683	chr4	19982123	19983188	-	19981290	19983188	A3SS	ENSMUST00000239390.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000086332.3	4930480G23Rik	chr4	transcribed_unitary_pseudogene	RIKEN cDNA 4930480G23 gene
novel_NIR_13684	chr4	19983616	19985181	-	19983616	20001493	A5SS	ENSMUST00000239390.2	novel	1.00	22	0	22	0	y	1.00	39	0	39	0	y	1.00	22	0	22	0	y	1.00	25	0	25	0	y	1.00	40	0	40	0	y	1.00	13	0	13	0	y	1.00	38	0	38	0	y	1.00	14	0	14	0	y	1.00	24	0	24	0	y	1.00	57	0	57	0	y	1.00	24	0	24	0	y	1.00	35	0	35	0	y	ENSMUSG00000086332.3	4930480G23Rik	chr4	transcribed_unitary_pseudogene	RIKEN cDNA 4930480G23 gene
novel_NIR_13685	chr4	19983616	19985181	-	19983616	20005164	A5SS	ENSMUST00000125909.3	novel	1.00	22	0	22	0	y	1.00	39	0	39	0	y	1.00	22	0	22	0	y	1.00	25	0	25	0	y	1.00	40	0	40	0	y	1.00	13	0	13	0	y	1.00	38	0	38	0	y	1.00	14	0	14	0	y	1.00	24	0	24	0	y	1.00	57	0	57	0	y	1.00	24	0	24	0	y	1.00	35	0	35	0	y	ENSMUSG00000086332.3	4930480G23Rik	chr4	transcribed_unitary_pseudogene	RIKEN cDNA 4930480G23 gene
novel_NIR_13686	chr4	19996359	20008210	+	20007961	20008210	5pMXE	ENSMUST00000125799.8	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.75	3	1	3	1	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000073988.14	Ttpa	chr4	protein_coding	tocopherol (alpha) transfer protein
novel_NIR_13687	chr4	20004369	20008210	+	20007961	20008210	5pMXE	ENSMUST00000125799.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000073988.14	Ttpa	chr4	protein_coding	tocopherol (alpha) transfer protein
novel_NIR_13688	chr4	20008258	20014631	+	20008346	20014631	A5SS	ENSMUST00000125799.8	novel	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.08	2	22	2	22	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.00	0	18	0	18	n	0.00	0	22	0	22	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.25	2	6	2	6	y	ENSMUSG00000073988.14	Ttpa	chr4	protein_coding	tocopherol (alpha) transfer protein
novel_NIR_13689	chr4	20009449	20014631	+	20008346	20014631	A5SS	ENSMUST00000125799.8	novel	0.30	3	7	3	7	y	0.67	14	7	14	7	y	0.29	9	22	9	22	y	0.56	18	14	18	14	y	0.52	11	10	11	10	y	0.25	6	18	6	18	y	0.35	12	22	12	22	y	0.00	0	7	0	7	n	0.48	10	11	10	11	y	0.50	14	14	14	14	y	0.44	8	10	8	10	y	0.65	11	6	11	6	y	ENSMUSG00000073988.14	Ttpa	chr4	protein_coding	tocopherol (alpha) transfer protein
novel_NIR_13690	chr4	20009775	20014631	+	20008346	20014631	A5SS	ENSMUST00000125799.8	novel	0.12	1	7	1	7	n	0.12	1	7	1	7	n	0.04	1	22	1	22	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.00	0	18	0	18	n	0.19	5	22	5	22	y	0.42	5	7	5	7	y	0.00	0	11	0	11	n	0.22	4	14	4	14	y	0.23	3	10	3	10	y	0.14	1	6	1	6	n	ENSMUSG00000073988.14	Ttpa	chr4	protein_coding	tocopherol (alpha) transfer protein
novel_NIR_13691	chr4	20012772	20014631	+	20008346	20014631	A5SS	ENSMUST00000125799.8	novel	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.15	4	22	4	22	y	0.18	3	14	3	14	y	0.23	3	10	3	10	y	0.05	1	18	1	18	n	0.00	0	22	0	22	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.40	4	6	4	6	y	ENSMUSG00000073988.14	Ttpa	chr4	protein_coding	tocopherol (alpha) transfer protein
novel_NIR_13692	chr4	20024953	20028408	+	20023894	20028408	A5SS	ENSMUST00000117632.8	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000073988.14	Ttpa	chr4	protein_coding	tocopherol (alpha) transfer protein
novel_NIR_13693	chr4	20027727	20028408	+	20023894	20028408	A5SS	ENSMUST00000117632.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000073988.14	Ttpa	chr4	protein_coding	tocopherol (alpha) transfer protein
novel_NIR_13694	chr4	20027932	20028408	+	20023894	20028408	A5SS	ENSMUST00000117632.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000073988.14	Ttpa	chr4	protein_coding	tocopherol (alpha) transfer protein
novel_NIR_13695	chr4	20028483	20046203	+	20042282	20046203	5pMXE	ENSMUST00000098242.4	novel	0.00	0	45	0	45	n	0.00	0	30	0	30	n	0.00	0	54	0	54	n	0.00	0	59	0	59	n	0.00	0	53	0	53	n	0.00	0	31	0	31	n	0.00	0	50	0	50	n	0.00	0	27	0	27	n	0.00	0	34	0	34	n	0.44	31	40	31	40	y	0.00	0	37	0	37	n	0.00	0	45	0	45	n	ENSMUSG00000073987.5	Ggh	chr4	protein_coding	gamma-glutamyl hydrolase
novel_NIR_13696	chr4	21797390	21798673	+	21797390	21798605	A3SS	ENSMUST00000065111.15	novel	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	20	0	20	n	0.06	1	15	1	15	n	0.00	0	15	0	15	n	0.20	2	8	2	8	y	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.20	1	4	1	4	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	ENSMUSG00000040455.18	Usp45	chr4	protein_coding	ubiquitin specific petidase 45
novel_NIR_13697	chr4	21797390	21798673	+	21797390	21804226	A3SS	ENSMUST00000137293.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040455.18	Usp45	chr4	protein_coding	ubiquitin specific petidase 45
novel_NIR_13698	chr4	22375752	22376496	+	22375770	22376496	A5SS	ENSMUST00000039234.10	novel	0.07	1	13	1	13	n	0.18	4	18	4	18	y	0.00	0	19	0	19	n	0.00	0	27	0	27	n	0.13	5	33	5	33	n	0.00	0	12	0	12	n	0.03	1	35	1	35	n	0.00	0	23	0	23	n	0.05	1	18	1	18	n	0.00	0	28	0	28	n	0.05	1	20	1	20	n	0.00	0	35	0	35	n	ENSMUSG00000040410.15	Fbxl4	chr4	protein_coding	F-box and leucine-rich repeat protein 4
novel_NIR_13699	chr4	22375770	22376481	+	22375770	22376633	A3SS	ENSMUST00000131972.8	novel	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000040410.15	Fbxl4	chr4	protein_coding	F-box and leucine-rich repeat protein 4
novel_NIR_13700	chr4	24902000	24903132	+	24901781	24903132	A5SS	ENSMUST00000151249.2	novel	0.00	0	8	0	8	n	0.00	0	22	0	22	n	0.08	1	11	1	11	n	0.19	3	13	3	13	y	0.12	1	7	1	7	n	0.00	0	3	0	3	n	0.30	3	7	3	7	y	0.00	0	6	0	6	n	0.29	6	15	6	15	y	0.31	5	11	5	11	y	0.15	2	11	2	11	y	0.25	1	3	1	3	n	ENSMUSG00000028261.14	Ndufaf4	chr4	protein_coding	NADH:ubiquinone oxidoreductase complex assembly factor 4
novel_NIR_13701	chr4	26340998	26346425	-	26340998	26346597	A5SS	ENSMUST00000041374.8	novel	0.11	1	8	1	8	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.27	3	8	3	8	y	0.29	5	12	5	12	y	0.50	1	1	1	1	n	0.00	0	5	0	5	n	0.38	3	5	3	5	y	0.50	1	1	1	1	n	0.00	0	12	0	12	n	1.00	1	0	1	0	n	0.00	0	5	0	5	n	ENSMUSG00000040520.8	Manea	chr4	protein_coding	mannosidase, endo-alpha
novel_NIR_13702	chr4	26340998	26346425	-	26340998	26346775	A5SS	ENSMUST00000153813.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.83	5	1	5	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000040520.8	Manea	chr4	protein_coding	mannosidase, endo-alpha
novel_NIR_13703	chr4	32248062	32252223	+	32248062	32317198	A3SS	ENSMUST00000156430.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040270.17	Bach2	chr4	protein_coding	BTB and CNC homology, basic leucine zipper transcription factor 2
novel_NIR_13704	chr4	32248062	32252223	+	32251810	32252223	5pMXE	ENSMUST00000133451.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000087049.2	Bach2it1	chr4	lncRNA	BTB and CNC homology 2, intronic transcript 1
novel_NIR_13705	chr4	32252321	32265642	+	32252321;32263782	32263645;32265642	ES	ENSMUST00000133451.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	1.00	5	0.0	5	0;0	y	ENSMUSG00000087049.2	Bach2it1	chr4	lncRNA	BTB and CNC homology 2, intronic transcript 1
novel_NIR_13706	chr4	3248191	3252550	+	3248191	3252607	A3SS	ENSMUST00000145581.2	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.08	1	12	1	12	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000085180.2	AI838599	chr4	lncRNA	expressed sequence AI838599
novel_NIR_13707	chr4	32560574	32561820	-	32560574	32561534	A5SS	ENSMUST00000126225.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000086150.2	Bach2os	chr4	lncRNA	BTB and CNC homology 2, opposite strand
novel_NIR_13708	chr4	32562009	32565508	-	32562009;32563226	32563063;32565508	ES	ENSMUST00000126225.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	0.00	0	0.5	0	0;1	n	0.00	0	1.0	0	0;2	n	0.00	0	1.0	0	0;2	n	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	0.67	2	1.0	2	2;0	y	ENSMUSG00000086150.2	Bach2os	chr4	lncRNA	BTB and CNC homology 2, opposite strand
novel_NIR_13709	chr4	32562009	32565508	-	32563509	32565508	3pMXE	ENSMUST00000136149.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000086150.2	Bach2os	chr4	lncRNA	BTB and CNC homology 2, opposite strand
novel_NIR_13710	chr4	32563367	32564381	+	32563367	32575240	A3SS	ENSMUST00000108180.9	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000040270.17	Bach2	chr4	protein_coding	BTB and CNC homology, basic leucine zipper transcription factor 2
novel_NIR_13711	chr4	32570565	32571584	-	32565554	32571584	A3SS	ENSMUST00000126225.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000086150.2	Bach2os	chr4	lncRNA	BTB and CNC homology 2, opposite strand
novel_NIR_13712	chr4	32570565	32571584	-	32565747	32571584	A3SS	ENSMUST00000136149.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	2	4	2	4	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000086150.2	Bach2os	chr4	lncRNA	BTB and CNC homology 2, opposite strand
novel_NIR_13713	chr4	32693591	32696222	+	32695565	32696222	5pMXE	ENSMUST00000136608.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000058006.13	Mdn1	chr4	protein_coding	midasin AAA ATPase 1
novel_NIR_13714	chr4	32860588	32864055	-	32860588	32874207	A5SS	ENSMUST00000035719.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000040183.14	Ankrd6	chr4	protein_coding	ankyrin repeat domain 6
novel_NIR_13715	chr4	32860588	32864055	-	32860588	32923297	A5SS	ENSMUST00000084749.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000040183.14	Ankrd6	chr4	protein_coding	ankyrin repeat domain 6
novel_NIR_13716	chr4	32860588	32864055	-	32860588	32950747	A5SS	ENSMUST00000084750.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000040183.14	Ankrd6	chr4	protein_coding	ankyrin repeat domain 6
novel_NIR_13717	chr4	33030521	33030914	-	33030521	33030857	A5SS	ENSMUST00000155691.2	novel	0.75	3	1	3	1	y	0.25	2	6	2	6	y	0.04	1	27	1	27	n	0.00	0	8	0	8	n	0.20	4	16	4	16	y	0.25	2	6	2	6	y	0.35	8	15	8	15	y	0.18	3	14	3	14	y	0.00	0	3	0	3	n	0.08	1	11	1	11	n	0.07	1	14	1	14	n	0.14	2	12	2	12	n	ENSMUSG00000085037.2	4933421O10Rik	chr4	lncRNA	RIKEN cDNA 4933421O10 gene
novel_NIR_13718	chr4	33229937	33230924	+	33226169	33230924	A5SS	ENSMUST00000067864.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000054679.9	Srsf12	chr4	protein_coding	serine and arginine-rich splicing factor 12
novel_NIR_13719	chr4	33246507	33246720	-	33246507	33247298	A5SS	ENSMUST00000155616.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.75	9	3	9	3	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	6	0	6	0	n	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040128.10	Pnrc1	chr4	protein_coding	proline-rich nuclear receptor coactivator 1
novel_NIR_13720	chr4	33246507	33246720	-	33246507	33289995	A5SS	ENSMUST00000137589.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.32	9	19	9	19	n	0.00	0	1	0	1	n	0.25	3	9	3	9	y	0.86	6	1	6	1	y	0.25	2	6	2	6	y	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000040128.10	Pnrc1	chr4	protein_coding	proline-rich nuclear receptor coactivator 1
novel_NIR_13721	chr4	33246507	33247998	-	33246507	33247298	5pMXE	ENSMUST00000155616.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	ENSMUSG00000040128.10	Pnrc1	chr4	protein_coding	proline-rich nuclear receptor coactivator 1
novel_NIR_13722	chr4	33246507	33247998	-	33246507	33289995	A5SS	ENSMUST00000137589.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	19	0	19	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.50	2	2	2	2	y	ENSMUSG00000040128.10	Pnrc1	chr4	protein_coding	proline-rich nuclear receptor coactivator 1
novel_NIR_13723	chr4	33310524	33320523	+	33310524	33320519	A3SS	ENSMUST00000108153.9	novel	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	18	0	18	n	0.00	0	9	0	9	n	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.22	2	7	2	7	y	0.14	1	6	1	6	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	ENSMUSG00000028274.18	Rngtt	chr4	protein_coding	RNA guanylyltransferase and 5'-phosphatase
novel_NIR_13724	chr4	34671837	34675030	-	34669663	34675030	A3SS	ENSMUST00000151549.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028293.15	Slc35a1	chr4	protein_coding	solute carrier family 35 (CMP-sialic acid transporter), member 1
novel_NIR_13725	chr4	34671837	34675030	-	34673928	34675030	A3SS&ES	ENSMUST00000126033.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000028293.15	Slc35a1	chr4	protein_coding	solute carrier family 35 (CMP-sialic acid transporter), member 1
novel_NIR_13726	chr4	34671846	34674074	-	34671846	34673809	A5SS&ES	ENSMUST00000126033.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.50	3	3	3	3	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000028293.15	Slc35a1	chr4	protein_coding	solute carrier family 35 (CMP-sialic acid transporter), member 1
novel_NIR_13727	chr4	34819600	34839332	-	34819600;34826880	34826693;34839332	ES	ENSMUST00000098163.9	novel	0.00	0	2.5	0	5;0	n	-	-	-	-	-	-	0.00	0	7.0	0	14;0	n	0.00	0	1.5	0	3;0	n	0.00	0	5.5	0	11;0	n	0.00	0	3.0	0	6;0	n	0.00	0	2.5	0	5;0	n	0.36	2	3.5	2	7;0	y	0.00	0	0.5	0	1;0	n	0.00	0	0.5	0	1;0	n	0.00	0	0.5	0	1;0	n	0.00	0	1.0	0	2;0	n	ENSMUSG00000039967.15	Zfp292	chr4	protein_coding	zinc finger protein 292
novel_NIR_13728	chr4	34819600	34839332	-	34819600;34826895	34826693;34839332	ES	ENSMUST00000047950.6	novel	0.00	0	3.5	0	5;2	n	0.00	0	0.5	0	0;1	n	0.00	0	11.5	0	14;9	n	0.00	0	3.5	0	3;4	n	0.00	0	7.0	0	11;3	n	0.00	0	5.5	0	6;5	n	0.00	0	4.5	0	5;4	n	0.31	2	4.5	2	7;2	y	0.00	0	1.5	0	1;2	n	0.00	0	2.0	0	1;3	n	0.00	0	1.0	0	1;1	n	0.00	0	1.0	0	2;0	n	ENSMUSG00000039967.15	Zfp292	chr4	protein_coding	zinc finger protein 292
novel_NIR_13729	chr4	3567474	3569364	-	3564257	3569364	A3SS	ENSMUST00000154922.8	novel	0.00	0	16	0	16	n	0.00	0	10	0	10	n	0.07	2	25	2	25	n	0.07	1	13	1	13	n	0.06	1	15	1	15	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.15	2	11	2	11	y	0.18	2	9	2	9	y	0.00	0	16	0	16	n	0.08	1	12	1	12	n	0.00	0	17	0	17	n	ENSMUSG00000028232.14	Tmem68	chr4	protein_coding	transmembrane protein 68
novel_NIR_13730	chr4	3939117	3939379	+	3938962	3939379	A5SS	ENSMUST00000108386.8	novel	0.00	0	5	0	5	n	0.36	5	9	5	9	y	0.00	0	3	0	3	n	0.56	5	4	5	4	y	0.44	4	5	4	5	y	0.60	3	2	3	2	y	0.00	0	11	0	11	n	0.57	4	3	4	3	y	0.50	2	2	2	2	y	0.27	3	8	3	8	y	0.00	0	5	0	5	n	0.50	5	5	5	5	y	ENSMUSG00000042198.13	Chchd7	chr4	protein_coding	coiled-coil-helix-coiled-coil-helix domain containing 7
novel_NIR_13731	chr4	3939117	3939424	+	3938962	3939424	A5SS	ENSMUST00000149544.8	novel	0.40	4	6	4	6	y	0.08	1	12	1	12	n	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	15	0	15	n	0.25	1	3	1	3	n	0.00	0	12	0	12	n	0.09	1	10	1	10	n	0.36	5	9	5	9	y	0.11	1	8	1	8	n	ENSMUSG00000042198.13	Chchd7	chr4	protein_coding	coiled-coil-helix-coiled-coil-helix domain containing 7
novel_NIR_13732	chr4	3939117	3939424	+	3939131	3939424	A5SS	ENSMUST00000121651.8	novel	0.20	4	16	4	16	y	0.07	1	13	1	13	n	0.06	1	17	1	17	n	0.00	0	12	0	12	n	0.00	0	27	0	27	n	0.00	0	15	0	15	n	0.00	0	29	0	29	n	0.08	1	12	1	12	n	0.00	0	10	0	10	n	0.05	1	19	1	19	n	0.22	5	18	5	18	y	0.08	1	12	1	12	n	ENSMUSG00000042198.13	Chchd7	chr4	protein_coding	coiled-coil-helix-coiled-coil-helix domain containing 7
novel_NIR_13733	chr4	3939526	3939778	+	3939526	3940779	A3SS	ENSMUST00000123769.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000042198.13	Chchd7	chr4	protein_coding	coiled-coil-helix-coiled-coil-helix domain containing 7
novel_NIR_13734	chr4	3939526	3940767	+	3939526	3940779	A3SS	ENSMUST00000123769.8	novel	1.00	7	0	7	0	y	1.00	8	0	8	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	4	0	4	0	y	ENSMUSG00000042198.13	Chchd7	chr4	protein_coding	coiled-coil-helix-coiled-coil-helix domain containing 7
novel_NIR_13735	chr4	3939526	3940769	+	3939526	3940779	A3SS	ENSMUST00000123769.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000042198.13	Chchd7	chr4	protein_coding	coiled-coil-helix-coiled-coil-helix domain containing 7
novel_NIR_13736	chr4	3940846	3941246	+	3938962	3941246	A5SS	ENSMUST00000121110.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000042198.13	Chchd7	chr4	protein_coding	coiled-coil-helix-coiled-coil-helix domain containing 7
novel_NIR_13737	chr4	3940846	3941246	+	3940883	3941246	A5SS	ENSMUST00000123769.8	novel	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000042198.13	Chchd7	chr4	protein_coding	coiled-coil-helix-coiled-coil-helix domain containing 7
novel_NIR_13738	chr4	40272854	40277687	-	40272854	40279158	A5SS	ENSMUST00000108108.3	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000071014.11	Ndufb6	chr4	protein_coding	NADH:ubiquinone oxidoreductase subunit B6
novel_NIR_13739	chr4	40697353	40699699	-	40697353	40702374	A5SS	ENSMUST00000155710.2	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000028411.16	Aptx	chr4	protein_coding	aprataxin
novel_NIR_13740	chr4	40697353	40699699	-	40697353	40702724	A5SS	ENSMUST00000068125.11	novel	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.17	1	5	1	5	n	0.19	3	13	3	13	y	0.25	2	6	2	6	y	0.00	0	9	0	9	n	ENSMUSG00000028411.16	Aptx	chr4	protein_coding	aprataxin
novel_NIR_13741	chr4	40697353	40699699	-	40697353	40703137	A5SS	ENSMUST00000030119.10	novel	0.67	2	1	2	1	y	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.11	1	8	1	8	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.19	3	13	3	13	y	0.15	2	11	2	11	y	0.00	0	4	0	4	n	ENSMUSG00000028411.16	Aptx	chr4	protein_coding	aprataxin
novel_NIR_13742	chr4	40697353	40701780	-	40697353	40702374	A5SS	ENSMUST00000155710.2	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000028411.16	Aptx	chr4	protein_coding	aprataxin
novel_NIR_13743	chr4	40697353	40701780	-	40697353	40702724	A5SS	ENSMUST00000068125.11	novel	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.20	2	8	2	8	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.28	5	13	5	13	y	0.33	3	6	3	6	y	0.00	0	9	0	9	n	ENSMUSG00000028411.16	Aptx	chr4	protein_coding	aprataxin
novel_NIR_13744	chr4	40697353	40701780	-	40697353	40703137	A5SS	ENSMUST00000030119.10	novel	0.50	1	1	1	1	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.40	2	3	2	3	y	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.11	1	8	1	8	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.28	5	13	5	13	y	0.21	3	11	3	11	y	0.00	0	4	0	4	n	ENSMUSG00000028411.16	Aptx	chr4	protein_coding	aprataxin
novel_NIR_13745	chr4	40697353	40702647	-	40697353	40702374	A5SS	ENSMUST00000155710.2	novel	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	0.50	3	3	3	3	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	6	0	6	0	y	ENSMUSG00000028411.16	Aptx	chr4	protein_coding	aprataxin
novel_NIR_13746	chr4	40697353	40702647	-	40697353	40702724	A5SS	ENSMUST00000068125.11	novel	0.38	3	5	3	5	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.27	3	8	3	8	y	0.71	5	2	5	2	y	0.00	0	2	0	2	n	0.50	3	3	3	3	y	0.17	1	5	1	5	n	0.38	3	5	3	5	y	0.24	4	13	4	13	y	0.14	1	6	1	6	n	0.40	6	9	6	9	y	ENSMUSG00000028411.16	Aptx	chr4	protein_coding	aprataxin
novel_NIR_13747	chr4	40697353	40702647	-	40697353	40703137	A5SS	ENSMUST00000030119.10	novel	0.75	3	1	3	1	y	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.50	3	3	3	3	y	0.31	5	11	5	11	y	0.00	0	6	0	6	n	0.27	3	8	3	8	y	0.25	1	3	1	3	n	0.38	3	5	3	5	y	0.24	4	13	4	13	y	0.08	1	11	1	11	n	0.60	6	4	6	4	y	ENSMUSG00000028411.16	Aptx	chr4	protein_coding	aprataxin
novel_NIR_13748	chr4	40723325	40723703	+	40722435	40723703	A5SS	ENSMUST00000139406.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	3	0	3	n	ENSMUSG00000028410.14	Dnaja1	chr4	protein_coding	DnaJ heat shock protein family (Hsp40) member A1
novel_NIR_13749	chr4	40723325	40723703	+	40723001	40723703	A5SS	ENSMUST00000137246.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.33	2	4	2	4	y	0.00	0	1	0	1	n	ENSMUSG00000028410.14	Dnaja1	chr4	protein_coding	DnaJ heat shock protein family (Hsp40) member A1
novel_NIR_13750	chr4	40723325	40723703	+	40723136	40723703	A5SS	ENSMUST00000129204.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.00	0	1	0	1	n	ENSMUSG00000028410.14	Dnaja1	chr4	protein_coding	DnaJ heat shock protein family (Hsp40) member A1
novel_NIR_13751	chr4	40723325	40723703	+	40723253	40723703	A5SS	ENSMUST00000149794.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000028410.14	Dnaja1	chr4	protein_coding	DnaJ heat shock protein family (Hsp40) member A1
novel_NIR_13752	chr4	40755837	40757773	-	40755837	40757277	5pMXE	ENSMUST00000137415.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000028409.12	Smu1	chr4	protein_coding	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)
novel_NIR_13753	chr4	40807317	40809679	-	40809404	40809679	3pMXE	ENSMUST00000108096.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	ENSMUSG00000028413.14	B4galt1	chr4	protein_coding	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1
novel_NIR_13754	chr4	40807832	40809679	-	40809404	40809679	3pMXE	ENSMUST00000108096.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000028413.14	B4galt1	chr4	protein_coding	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1
novel_NIR_13755	chr4	41009269	41011712	+	41009269	41011527	A3SS	ENSMUST00000091614.7	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	6	0	6	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.31	4	9	4	9	y	-	-	-	-	-	-	0.50	6	6	6	6	y	ENSMUSG00000028423.16	Nfx1	chr4	protein_coding	nuclear transcription factor, X-box binding 1
novel_NIR_13756	chr4	41366930	41378947	+	41366930	41371197	3pMXE	ENSMUST00000136705.2	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000028437.15	Ubap1	chr4	protein_coding	ubiquitin-associated protein 1
novel_NIR_13757	chr4	41371849	41378460	+	41371849	41387175	A3SS	ENSMUST00000132235.2	novel	1.00	5	0	5	0	y	1.00	4	0	4	0	y	0.22	2	7	2	7	y	1.00	6	0	6	0	y	0.50	3	3	3	3	y	0.00	0	5	0	5	n	0.73	8	3	8	3	y	0.00	0	2	0	2	n	1.00	3	0	3	0	y	1.00	8	0	8	0	y	0.62	5	3	5	3	y	0.92	11	1	11	1	y	ENSMUSG00000028437.15	Ubap1	chr4	protein_coding	ubiquitin-associated protein 1
novel_NIR_13758	chr4	41521969	41523915	-	41521969	41524366	A5SS	ENSMUST00000108049.9	novel	0.00	0	4	0	4	n	0.33	2	4	2	4	y	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	15	0	15	n	0.00	0	4	0	4	n	0.00	0	17	0	17	n	0.12	1	7	1	7	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	ENSMUSG00000028439.15	Fam219a	chr4	protein_coding	family with sequence similarity 219, member A
novel_NIR_13759	chr4	41521969	41524315	-	41521969	41524366	A5SS	ENSMUST00000108049.9	novel	0.33	2	4	2	4	y	0.00	0	4	0	4	n	0.15	2	11	2	11	y	0.00	0	8	0	8	n	0.00	0	15	0	15	n	0.20	1	4	1	4	n	0.26	6	17	6	17	y	0.12	1	7	1	7	n	0.50	1	1	1	1	n	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.10	1	9	1	9	n	ENSMUSG00000028439.15	Fam219a	chr4	protein_coding	family with sequence similarity 219, member A
novel_NIR_13760	chr4	41523988	41524366	-	41521969	41524366	A3SS	ENSMUST00000108049.9	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.11	1	8	1	8	n	0.00	0	15	0	15	n	0.33	2	4	2	4	y	0.00	0	17	0	17	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	ENSMUSG00000028439.15	Fam219a	chr4	protein_coding	family with sequence similarity 219, member A
novel_NIR_13761	chr4	41630080	41630597	+	41630084	41630597	A5SS	ENSMUST00000102963.10	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.60	9	6	9	6	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061322.16	Dnai1	chr4	protein_coding	dynein axonemal intermediate chain 1
novel_NIR_13762	chr4	41631454	41632140	+	41630676	41632140	A5SS	ENSMUST00000102963.10	novel	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	50	0	50	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.09	1	10	1	10	n	0.00	0	4	0	4	n	0.33	2	4	2	4	y	0.00	0	16	0	16	n	ENSMUSG00000061322.16	Dnai1	chr4	protein_coding	dynein axonemal intermediate chain 1
novel_NIR_13763	chr4	41631454	41632140	+	41631787	41632140	5pMXE	ENSMUST00000143198.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	8	0	8	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	7	0	7	n	ENSMUSG00000061322.16	Dnai1	chr4	protein_coding	dynein axonemal intermediate chain 1
novel_NIR_13764	chr4	41739580	41740568	-	41739580	41740776	A5SS	ENSMUST00000071561.7	novel	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	ENSMUSG00000036078.17	Sigmar1	chr4	protein_coding	sigma non-opioid intracellular receptor 1
novel_NIR_13765	chr4	41740976	41741110	-	41740976	41741094	A5SS	ENSMUST00000146655.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000036078.17	Sigmar1	chr4	protein_coding	sigma non-opioid intracellular receptor 1
novel_NIR_13766	chr4	41740976	41741110	-	41740976	41745002	A5SS	ENSMUST00000148223.8	novel	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.16	3	16	3	16	y	0.00	0	17	0	17	n	0.00	0	20	0	20	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	ENSMUSG00000036078.17	Sigmar1	chr4	protein_coding	sigma non-opioid intracellular receptor 1
novel_NIR_13767	chr4	41740976	41741110	-	41740976	41755169	A5SS	ENSMUST00000133590.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000036078.17	Sigmar1	chr4	protein_coding	sigma non-opioid intracellular receptor 1
novel_NIR_13768	chr4	41755411	41755539	-	41755375	41755539	A3SS	ENSMUST00000123524.2	novel	0.21	3	11	3	11	y	0.33	1	2	1	2	n	0.40	4	6	4	6	y	0.18	2	9	2	9	y	0.47	9	10	9	10	y	0.25	1	3	1	3	n	0.00	0	16	0	16	n	0.00	0	5	0	5	n	0.60	6	4	6	4	y	0.25	5	15	5	15	y	0.36	5	9	5	9	y	0.11	2	16	2	16	n	ENSMUSG00000036078.17	Sigmar1	chr4	protein_coding	sigma non-opioid intracellular receptor 1
novel_NIR_13769	chr4	41758947	41763582	+	41702894	41763582	A5SS	ENSMUST00000108041.8	novel	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	ENSMUSG00000073889.11	Il11ra1	chr4	protein_coding	interleukin 11 receptor, alpha chain 1
novel_NIR_13770	chr4	41758947	41763582	+	41760513	41763582	5pMXE	ENSMUST00000146608.8	novel	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	ENSMUSG00000073889.11	Il11ra1	chr4	protein_coding	interleukin 11 receptor, alpha chain 1
novel_NIR_13771	chr4	41758947	41763582	+	41760551	41763582	5pMXE	ENSMUST00000098132.11	novel	0.21	5	19	5	19	y	0.14	3	18	3	18	n	0.05	1	18	1	18	n	0.04	1	27	1	27	n	0.02	1	46	1	46	n	0.07	2	26	2	26	n	0.10	3	26	3	26	n	0.00	0	13	0	13	n	0.07	2	28	2	28	n	0.00	0	21	0	21	n	0.18	4	18	4	18	y	0.03	1	28	1	28	n	ENSMUSG00000073889.11	Il11ra1	chr4	protein_coding	interleukin 11 receptor, alpha chain 1
novel_NIR_13772	chr4	41758947	41763582	+	41762423	41763582	5pMXE	ENSMUST00000108042.3	novel	0.62	5	3	5	3	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	ENSMUSG00000073889.11	Il11ra1	chr4	protein_coding	interleukin 11 receptor, alpha chain 1
novel_NIR_13773	chr4	41760551	41763492	+	41760551	41761077	A3SS&ES	ENSMUST00000108040.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000073889.11	Il11ra1	chr4	protein_coding	interleukin 11 receptor, alpha chain 1
novel_NIR_13774	chr4	41760551	41763492	+	41760551	41763582	A3SS	ENSMUST00000098132.11	novel	0.05	1	19	1	19	n	0.00	0	18	0	18	n	0.00	0	18	0	18	n	0.00	0	27	0	27	n	0.00	0	46	0	46	n	0.00	0	26	0	26	n	0.00	0	26	0	26	n	0.19	3	13	3	13	y	0.00	0	28	0	28	n	0.00	0	21	0	21	n	0.00	0	18	0	18	n	0.00	0	28	0	28	n	ENSMUSG00000073889.11	Il11ra1	chr4	protein_coding	interleukin 11 receptor, alpha chain 1
novel_NIR_13775	chr4	41761162	41761926	+	41761162	41763582	A3SS	ENSMUST00000108040.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000073889.11	Il11ra1	chr4	protein_coding	interleukin 11 receptor, alpha chain 1
novel_NIR_13776	chr4	42629954	42631289	+	42629954;42631071	42630939;42631289	ES	ENSMUST00000166898.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000091938.4	Gm2564	chr4	unprocessed_pseudogene	predicted gene 2564
novel_NIR_13777	chr4	42654302	42655499	+	42655357	42655499	5pMXE	ENSMUST00000177785.3	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000096826.3	Ccl27b	chr4	protein_coding	chemokine (C-C motif) ligand 27b
novel_NIR_13778	chr4	42679036	42760976	+	42735952	42760976	5pMXE	ENSMUST00000107984.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000054885.12	4930578G10Rik	chr4	protein_coding	RIKEN cDNA 4930578G10 gene
novel_NIR_13779	chr4	43010050	43010256	-	43010172	43010256	A3SS	ENSMUST00000123332.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028453.11	Fancg	chr4	protein_coding	Fanconi anemia, complementation group G
novel_NIR_13780	chr4	43034761	43034943	-	43034764	43034943	A3SS	ENSMUST00000107958.8	novel	0.06	2	32	2	32	n	0.08	2	22	2	22	n	0.03	1	29	1	29	n	0.07	2	26	2	26	n	0.11	4	33	4	33	n	0.00	0	22	0	22	n	0.11	4	34	4	34	n	0.08	1	11	1	11	n	0.05	1	18	1	18	n	0.16	5	27	5	27	y	0.03	1	32	1	32	n	0.04	1	23	1	23	n	ENSMUSG00000036002.13	Fam214b	chr4	protein_coding	family with sequence similarity 214, member B
novel_NIR_13781	chr4	43037206	43040274	-	43037206	43039233	5pMXE	ENSMUST00000144999.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000036002.13	Fam214b	chr4	protein_coding	family with sequence similarity 214, member B
novel_NIR_13782	chr4	43037206	43040274	-	43037206	43039966	A5SS	ENSMUST00000107958.8	novel	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.00	0	19	0	19	n	0.00	0	13	0	13	n	0.20	3	12	3	12	y	0.00	0	9	0	9	n	0.18	2	9	2	9	y	0.00	0	9	0	9	n	0.08	1	12	1	12	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.08	1	12	1	12	n	ENSMUSG00000036002.13	Fam214b	chr4	protein_coding	family with sequence similarity 214, member B
novel_NIR_13783	chr4	43037206	43040274	-	43037206	43045648	A5SS	ENSMUST00000107956.8	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.23	3	10	3	10	y	0.00	0	3	0	3	n	0.20	2	8	2	8	y	0.00	0	1	0	1	n	0.14	1	6	1	6	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.08	1	11	1	11	n	ENSMUSG00000036002.13	Fam214b	chr4	protein_coding	family with sequence similarity 214, member B
novel_NIR_13784	chr4	43037206	43040274	-	43037206	43045807	A5SS	ENSMUST00000107957.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000036002.13	Fam214b	chr4	protein_coding	family with sequence similarity 214, member B
novel_NIR_13785	chr4	43037206	43040274	-	43037206	43046104	A5SS	ENSMUST00000036462.12	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.30	3	7	3	7	y	0.00	0	3	0	3	n	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000036002.13	Fam214b	chr4	protein_coding	family with sequence similarity 214, member B
novel_NIR_13786	chr4	43037206	43040274	-	43037206;43039899	43039815;43040274	ES	ENSMUST00000107959.8	novel	0.00	0	1.0	0	2;0	n	0.00	0	3.0	0	6;0	n	0.00	0	0.5	0	1;0	n	0.00	0	1.0	0	2;0	n	0.55	3	2.5	3	5;0	y	-	-	-	-	-	-	0.29	2	5.0	2	10;0	y	0.00	0	1.0	0	2;0	n	1.00	1	0.0	1	0;0	n	0.00	0	1.5	0	3;0	n	0.00	0	1.0	0	2;0	n	0.33	1	2.0	1	4;0	n	ENSMUSG00000036002.13	Fam214b	chr4	protein_coding	family with sequence similarity 214, member B
novel_NIR_13787	chr4	43037206	43040274	-	43037206;43039918	43039815;43040274	ES	ENSMUST00000152846.8	novel	0.00	0	1.0	0	2;0	n	0.00	0	4.0	0	6;2	n	0.00	0	0.5	0	1;0	n	0.00	0	1.5	0	2;1	n	0.43	3	4.0	3	5;3	y	-	-	-	-	-	-	0.29	2	5.0	2	10;0	y	0.00	0	2.0	0	2;2	n	1.00	1	0.0	1	0;0	n	0.00	0	2.5	0	3;2	n	0.00	0	1.0	0	2;0	n	0.33	1	2.0	1	4;0	n	ENSMUSG00000036002.13	Fam214b	chr4	protein_coding	family with sequence similarity 214, member B
novel_NIR_13788	chr4	43046277	43087903	+	43059285	43087903	5pMXE	ENSMUST00000207569.2	novel	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000028456.19	Unc13b	chr4	protein_coding	unc-13 homolog B
novel_NIR_13789	chr4	43051377	43051528	+	43051377	43052945	A3SS	ENSMUST00000180426.3	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.33	1	2	1	2	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000096974.3	Gm26881	chr4	lncRNA	predicted gene, 26881
novel_NIR_13790	chr4	43051377	43051528	+	43051377	43053154	A3SS	ENSMUST00000209785.2	novel	0.00	0	7	0	7	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	8	0	8	n	ENSMUSG00000096974.3	Gm26881	chr4	lncRNA	predicted gene, 26881
novel_NIR_13791	chr4	43115160	43116710	+	43115160	43161443	A3SS	ENSMUST00000151611.9	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028456.19	Unc13b	chr4	protein_coding	unc-13 homolog B
novel_NIR_13792	chr4	43115160	43116710	+	43115160	43165744	A3SS	ENSMUST00000207569.2	novel	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.18	2	9	2	9	y	0.00	0	2	0	2	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	ENSMUSG00000028456.19	Unc13b	chr4	protein_coding	unc-13 homolog B
novel_NIR_13793	chr4	43115160	43116710	+	43115160	43230118	A3SS	ENSMUST00000132310.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028456.19	Unc13b	chr4	protein_coding	unc-13 homolog B
novel_NIR_13794	chr4	43182859	43184906	+	43182859	43230118	A3SS	ENSMUST00000207569.2	novel	0.25	2	6	2	6	y	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	18	0	18	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000028456.19	Unc13b	chr4	protein_coding	unc-13 homolog B
novel_NIR_13795	chr4	43291731	43296984	+	43291731	43302256	A3SS	ENSMUST00000107937.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028457.19	Atp8b5	chr4	protein_coding	ATPase, class I, type 8B, member 5
novel_NIR_13796	chr4	43291731	43296984	+	43291731	43302582	A3SS	ENSMUST00000056010.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028457.19	Atp8b5	chr4	protein_coding	ATPase, class I, type 8B, member 5
novel_NIR_13797	chr4	43291731	43296984	+	43291731	43308488	A3SS	ENSMUST00000136262.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028457.19	Atp8b5	chr4	protein_coding	ATPase, class I, type 8B, member 5
novel_NIR_13798	chr4	43493759	43494497	+	43493759	43493888	3pMXE	ENSMUST00000143073.8	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000028461.13	Ccdc107	chr4	protein_coding	coiled-coil domain containing 107
novel_NIR_13799	chr4	43499337	43504340	-	43499337	43499470	5pMXE	ENSMUST00000054538.13	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000051517.15	Arhgef39	chr4	protein_coding	Rho guanine nucleotide exchange factor (GEF) 39
novel_NIR_13800	chr4	43548146;43548725	43548675;43549086	-	43548146	43549086	cassetteExon	ENSMUST00000030187.14	novel	0.26	5.0	14	5;5	14	y	0.03	0.5	14	0;1	14	n	0.17	4.0	20	0;8	20	n	0.02	0.5	25	0;1	25	n	0.28	10.5	27	10;11	27	y	0.20	3.5	14	4;3	14	y	0.18	4.5	21	5;4	21	y	0.26	7.5	21	7;8	21	y	0.26	2.5	7	4;1	7	n	0.25	5.0	15	5;5	15	y	0.00	0.0	10	0;0	10	n	0.05	1.0	20	0;2	20	n	ENSMUSG00000028465.17	Tln1	chr4	protein_coding	talin 1
novel_NIR_13801	chr4	43548725	43549086	-	43548146	43549086	A3SS	ENSMUST00000030187.14	novel	0.26	5	14	5	14	n	0.07	1	14	1	14	n	0.29	8	20	8	20	y	0.04	1	25	1	25	n	0.29	11	27	11	27	n	0.18	3	14	3	14	n	0.16	4	21	4	21	n	0.28	8	21	8	21	n	0.12	1	7	1	7	n	0.25	5	15	5	15	n	0.00	0	10	0	10	n	0.09	2	20	2	20	n	ENSMUSG00000028465.17	Tln1	chr4	protein_coding	talin 1
novel_NIR_13802	chr4	43556783	43556934	-	43556783	43558381	A5SS	ENSMUST00000130353.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000028465.17	Tln1	chr4	protein_coding	talin 1
novel_NIR_13803	chr4	43556783	43556934	-	43556783	43562130	A5SS	ENSMUST00000030187.14	novel	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.07	1	14	1	14	n	0.18	4	18	4	18	y	0.05	1	20	1	20	n	0.04	1	22	1	22	n	0.06	1	15	1	15	n	0.10	1	9	1	9	n	0.00	0	13	0	13	n	0.00	0	26	0	26	n	0.07	1	14	1	14	n	0.07	1	13	1	13	n	ENSMUSG00000028465.17	Tln1	chr4	protein_coding	talin 1
novel_NIR_13804	chr4	43654578	43654716	-	43654614	43654716	A3SS	ENSMUST00000134050.8	novel	0.00	0	11	0	11	n	0.42	5	7	5	7	y	0.33	1	2	1	2	n	0.00	0	7	0	7	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	ENSMUSG00000028470.11	Hint2	chr4	protein_coding	histidine triad nucleotide binding protein 2
novel_NIR_13805	chr4	43654616	43654716	-	43654614	43654716	A3SS	ENSMUST00000134050.8	novel	0.31	5	11	5	11	y	0.71	17	7	17	7	y	0.50	2	2	2	2	y	0.42	5	7	5	7	y	0.29	2	5	2	5	y	0.50	2	2	2	2	y	0.67	12	6	12	6	y	0.40	2	3	2	3	y	0.40	4	6	4	6	y	0.15	2	11	2	11	y	0.50	4	4	4	4	y	0.39	7	11	7	11	y	ENSMUSG00000028470.11	Hint2	chr4	protein_coding	histidine triad nucleotide binding protein 2
novel_NIR_13806	chr4	43654637	43654716	-	43654614	43654716	A3SS	ENSMUST00000134050.8	novel	0.00	0	11	0	11	n	0.12	1	7	1	7	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.15	2	11	2	11	y	0.00	0	4	0	4	n	0.00	0	11	0	11	n	ENSMUSG00000028470.11	Hint2	chr4	protein_coding	histidine triad nucleotide binding protein 2
novel_NIR_13807	chr4	43654761	43654906	-	43654790	43654906	A3SS	ENSMUST00000130593.8	novel	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.12	2	15	2	15	n	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000028470.11	Hint2	chr4	protein_coding	histidine triad nucleotide binding protein 2
novel_NIR_13808	chr4	44025560	44032406	+	44025560	44030215	A3SS&ES	ENSMUST00000107849.10	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000028478.19	Clta	chr4	protein_coding	clathrin, light polypeptide (Lca)
novel_NIR_13809	chr4	44025560	44032406	+	44025560	44031400	A3SS&ES	ENSMUST00000107847.10	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	11	0	11	n	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028478.19	Clta	chr4	protein_coding	clathrin, light polypeptide (Lca)
novel_NIR_13810	chr4	44041872	44042163	-	44040436	44042163	A3SS	ENSMUST00000173234.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028479.19	Gne	chr4	protein_coding	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase
novel_NIR_13811	chr4	44041872	44042163	-	44041889	44042163	A3SS	ENSMUST00000172533.8	novel	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.25	2	6	2	6	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	6	0	6	n	ENSMUSG00000028479.19	Gne	chr4	protein_coding	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase
novel_NIR_13812	chr4	44060227	44063072	-	44060227	44063087	A5SS	ENSMUST00000173976.2	novel	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	19	0	19	n	0.13	2	13	2	13	n	0.00	0	3	0	3	n	0.04	1	25	1	25	n	0.15	2	11	2	11	y	0.00	0	8	0	8	n	0.00	0	27	0	27	n	0.00	0	22	0	22	n	0.00	0	23	0	23	n	ENSMUSG00000028479.19	Gne	chr4	protein_coding	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase
novel_NIR_13813	chr4	44066960	44067673	-	44066960	44072388	A5SS	ENSMUST00000173383.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	3	3	3	3	y	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000028479.19	Gne	chr4	protein_coding	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase
novel_NIR_13814	chr4	44066960	44067673	-	44066960	44072830	A5SS	ENSMUST00000128439.8	novel	0.25	1	3	1	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.20	2	8	2	8	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.43	3	4	3	4	y	0.00	0	4	0	4	n	0.33	1	2	1	2	n	ENSMUSG00000028479.19	Gne	chr4	protein_coding	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase
novel_NIR_13815	chr4	44066960	44067673	-	44066960	44083825	A5SS	ENSMUST00000144985.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000028479.19	Gne	chr4	protein_coding	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase
novel_NIR_13816	chr4	44066960	44067673	-	44066960	44084048	A5SS	ENSMUST00000030201.14	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000028479.19	Gne	chr4	protein_coding	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase
novel_NIR_13817	chr4	44066960	44068216	-	44066960	44072388	A5SS	ENSMUST00000173383.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	8	0	8	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000028479.19	Gne	chr4	protein_coding	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase
novel_NIR_13818	chr4	44066960	44068216	-	44066960	44072830	A5SS	ENSMUST00000128439.8	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	8	0	8	n	1.00	8	0	8	0	y	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000028479.19	Gne	chr4	protein_coding	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase
novel_NIR_13819	chr4	44066960	44068216	-	44066960	44083825	A5SS	ENSMUST00000144985.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	8	0	8	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028479.19	Gne	chr4	protein_coding	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase
novel_NIR_13820	chr4	44066960	44068216	-	44066960	44084048	A5SS	ENSMUST00000030201.14	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.89	8	1	8	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028479.19	Gne	chr4	protein_coding	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase
novel_NIR_13821	chr4	44066960	44072437	-	44066960	44072362	A5SS	ENSMUST00000102936.9	novel	0.04	2	44	2	44	n	0.08	3	36	3	36	n	0.00	0	16	0	16	n	0.03	3	90	3	90	n	0.04	3	75	3	75	n	0.16	4	21	4	21	y	0.10	7	66	7	66	n	0.00	0	35	0	35	n	0.00	0	58	0	58	n	0.03	3	91	3	91	n	0.07	3	39	3	39	n	0.06	4	68	4	68	n	ENSMUSG00000028479.19	Gne	chr4	protein_coding	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase
novel_NIR_13822	chr4	44066960	44072437	-	44066960	44072388	A5SS	ENSMUST00000173383.2	novel	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	0.50	3	3	3	3	y	1.00	3	0	3	0	y	0.67	4	2	4	2	y	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.50	3	3	3	3	y	1.00	3	0	3	0	y	0.80	4	1	4	1	y	ENSMUSG00000028479.19	Gne	chr4	protein_coding	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase
novel_NIR_13823	chr4	44066960	44072437	-	44066960	44072830	A5SS	ENSMUST00000128439.8	novel	0.40	2	3	2	3	y	1.00	3	0	3	0	y	-	-	-	-	-	-	0.27	3	8	3	8	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	0.64	7	4	7	4	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.43	3	4	3	4	y	0.43	3	4	3	4	y	0.67	4	2	4	2	y	ENSMUSG00000028479.19	Gne	chr4	protein_coding	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase
novel_NIR_13824	chr4	44066960	44072437	-	44066960	44083825	A5SS	ENSMUST00000144985.8	novel	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	ENSMUSG00000028479.19	Gne	chr4	protein_coding	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase
novel_NIR_13825	chr4	44066960	44072437	-	44066960	44084048	A5SS	ENSMUST00000030201.14	novel	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	0.75	3	1	3	1	y	1.00	4	0	4	0	y	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	ENSMUSG00000028479.19	Gne	chr4	protein_coding	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase
novel_NIR_13826	chr4	44756700	44761850	+	44756034	44761850	A5SS	ENSMUST00000154121.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035649.18	Zcchc7	chr4	protein_coding	zinc finger, CCHC domain containing 7
novel_NIR_13827	chr4	44756700	44761850	+	44756692	44761850	A5SS	ENSMUST00000107824.9	novel	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	17	0	17	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	ENSMUSG00000035649.18	Zcchc7	chr4	protein_coding	zinc finger, CCHC domain containing 7
novel_NIR_13828	chr4	44756700	44761850	+	44756696	44761850	A5SS	ENSMUST00000143385.2	novel	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000035649.18	Zcchc7	chr4	protein_coding	zinc finger, CCHC domain containing 7
novel_NIR_13829	chr4	44756700	44761850	+	44760583	44761850	5pMXE	ENSMUST00000067521.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035649.18	Zcchc7	chr4	protein_coding	zinc finger, CCHC domain containing 7
novel_NIR_13830	chr4	44894295	44894916	+	44893570	44894916	A5SS	ENSMUST00000107824.9	novel	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.25	5	15	5	15	y	0.00	0	11	0	11	n	0.00	0	26	0	26	n	0.27	3	8	3	8	y	0.07	1	13	1	13	n	0.08	1	11	1	11	n	0.11	2	16	2	16	n	0.00	0	20	0	20	n	0.00	0	14	0	14	n	0.00	0	18	0	18	n	ENSMUSG00000035649.18	Zcchc7	chr4	protein_coding	zinc finger, CCHC domain containing 7
novel_NIR_13831	chr4	44908486	44916180	+	44908486	44925975	A3SS	ENSMUST00000107824.9	novel	0.09	2	20	2	20	n	0.00	0	14	0	14	n	0.09	1	10	1	10	n	0.00	0	12	0	12	n	0.14	3	19	3	19	n	0.21	3	11	3	11	y	0.11	2	17	2	17	n	0.00	0	10	0	10	n	0.07	1	13	1	13	n	0.00	0	14	0	14	n	0.00	0	21	0	21	n	0.00	0	27	0	27	n	ENSMUSG00000035649.18	Zcchc7	chr4	protein_coding	zinc finger, CCHC domain containing 7
novel_NIR_13832	chr4	44908486	44916184	+	44908486	44925975	A3SS	ENSMUST00000107824.9	novel	0.00	0	20	0	20	n	0.00	0	14	0	14	n	0.09	1	10	1	10	n	0.00	0	12	0	12	n	0.10	2	19	2	19	n	0.15	2	11	2	11	y	0.15	3	17	3	17	n	0.23	3	10	3	10	y	0.07	1	13	1	13	n	0.00	0	14	0	14	n	0.05	1	21	1	21	n	0.04	1	27	1	27	n	ENSMUSG00000035649.18	Zcchc7	chr4	protein_coding	zinc finger, CCHC domain containing 7
novel_NIR_13833	chr4	44924267	44925975	+	44908486	44925975	A5SS	ENSMUST00000107824.9	novel	0.09	2	20	2	20	n	0.18	3	14	3	14	y	0.38	6	10	6	10	y	0.25	4	12	4	12	y	0.37	11	19	11	19	y	0.31	5	11	5	11	y	0.26	6	17	6	17	y	0.41	7	10	7	10	y	0.19	3	13	3	13	y	0.30	6	14	6	14	y	0.28	8	21	8	21	y	0.07	2	27	2	27	n	ENSMUSG00000035649.18	Zcchc7	chr4	protein_coding	zinc finger, CCHC domain containing 7
novel_NIR_13834	chr4	44981754	44982879	+	44981506	44982879	A5SS	ENSMUST00000150394.8	novel	1.00	20	0	20	0	y	1.00	11	0	11	0	y	1.00	22	0	22	0	y	1.00	10	0	10	0	y	1.00	31	0	31	0	y	1.00	15	0	15	0	y	1.00	21	0	21	0	y	1.00	25	0	25	0	y	1.00	5	0	5	0	y	1.00	8	0	8	0	y	1.00	7	0	7	0	y	1.00	10	0	10	0	y	ENSMUSG00000035637.15	Grhpr	chr4	protein_coding	glyoxylate reductase/hydroxypyruvate reductase
novel_NIR_13835	chr4	44981754	44982879	+	44981550	44982879	A5SS	ENSMUST00000128973.2	novel	0.83	20	4	20	4	y	0.79	11	3	11	3	y	0.88	22	3	22	3	y	0.77	10	3	10	3	y	0.84	31	6	31	6	y	0.79	15	4	15	4	y	0.72	21	8	21	8	y	0.83	25	5	25	5	y	0.71	5	2	5	2	y	0.80	8	2	8	2	y	1.00	7	0	7	0	y	0.83	10	2	10	2	y	ENSMUSG00000035637.15	Grhpr	chr4	protein_coding	glyoxylate reductase/hydroxypyruvate reductase
novel_NIR_13836	chr4	44981754	44982879	+	44981694	44982879	A5SS	ENSMUST00000143589.2	novel	1.00	20	0	20	0	y	1.00	11	0	11	0	y	1.00	22	0	22	0	y	1.00	10	0	10	0	y	1.00	31	0	31	0	y	1.00	15	0	15	0	y	1.00	21	0	21	0	y	1.00	25	0	25	0	y	1.00	5	0	5	0	y	1.00	8	0	8	0	y	1.00	7	0	7	0	y	1.00	10	0	10	0	y	ENSMUSG00000035637.15	Grhpr	chr4	protein_coding	glyoxylate reductase/hydroxypyruvate reductase
novel_NIR_13837	chr4	44982241	44982879	+	44981506	44982879	A5SS	ENSMUST00000150394.8	novel	1.00	29	0	29	0	y	1.00	17	0	17	0	y	1.00	32	0	32	0	y	1.00	22	0	22	0	y	1.00	33	0	33	0	y	1.00	16	0	16	0	y	1.00	17	0	17	0	y	1.00	16	0	16	0	y	1.00	18	0	18	0	y	1.00	33	0	33	0	y	1.00	15	0	15	0	y	1.00	15	0	15	0	y	ENSMUSG00000035637.15	Grhpr	chr4	protein_coding	glyoxylate reductase/hydroxypyruvate reductase
novel_NIR_13838	chr4	44982241	44982879	+	44981550	44982879	A5SS	ENSMUST00000128973.2	novel	0.88	29	4	29	4	y	0.85	17	3	17	3	y	0.91	32	3	32	3	y	0.88	22	3	22	3	y	0.85	33	6	33	6	y	0.80	16	4	16	4	y	0.68	17	8	17	8	y	0.76	16	5	16	5	y	0.90	18	2	18	2	y	0.94	33	2	33	2	y	1.00	15	0	15	0	y	0.88	15	2	15	2	y	ENSMUSG00000035637.15	Grhpr	chr4	protein_coding	glyoxylate reductase/hydroxypyruvate reductase
novel_NIR_13839	chr4	44982241	44982879	+	44981694	44982879	A5SS	ENSMUST00000143589.2	novel	1.00	29	0	29	0	y	1.00	17	0	17	0	y	1.00	32	0	32	0	y	1.00	22	0	22	0	y	1.00	33	0	33	0	y	1.00	16	0	16	0	y	1.00	17	0	17	0	y	1.00	16	0	16	0	y	1.00	18	0	18	0	y	1.00	33	0	33	0	y	1.00	15	0	15	0	y	1.00	15	0	15	0	y	ENSMUSG00000035637.15	Grhpr	chr4	protein_coding	glyoxylate reductase/hydroxypyruvate reductase
novel_NIR_13840	chr4	44982682	44982879	+	44981506	44982879	A5SS	ENSMUST00000150394.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035637.15	Grhpr	chr4	protein_coding	glyoxylate reductase/hydroxypyruvate reductase
novel_NIR_13841	chr4	44982682	44982879	+	44981550	44982879	A5SS	ENSMUST00000128973.2	novel	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.33	3	6	3	6	y	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000035637.15	Grhpr	chr4	protein_coding	glyoxylate reductase/hydroxypyruvate reductase
novel_NIR_13842	chr4	44982682	44982879	+	44981694	44982879	A5SS	ENSMUST00000143589.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035637.15	Grhpr	chr4	protein_coding	glyoxylate reductase/hydroxypyruvate reductase
novel_NIR_13843	chr4	44982979	44983874	+	44981506	44983874	A5SS	ENSMUST00000151148.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	9	0	9	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035637.15	Grhpr	chr4	protein_coding	glyoxylate reductase/hydroxypyruvate reductase
novel_NIR_13844	chr4	44983436	44983874	+	44981506	44983874	A5SS	ENSMUST00000151148.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035637.15	Grhpr	chr4	protein_coding	glyoxylate reductase/hydroxypyruvate reductase
novel_NIR_13845	chr4	44983645	44983874	+	44981506	44983874	A5SS	ENSMUST00000151148.8	novel	1.00	3	0	3	0	y	1.00	9	0	9	0	y	1.00	5	0	5	0	y	1.00	21	0	21	0	y	1.00	22	0	22	0	y	1.00	2	0	2	0	y	1.00	10	0	10	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	22	0	22	0	y	1.00	11	0	11	0	y	-	-	-	-	-	-	ENSMUSG00000035637.15	Grhpr	chr4	protein_coding	glyoxylate reductase/hydroxypyruvate reductase
novel_NIR_13846	chr4	44983655	44983874	+	44981506	44983874	A5SS	ENSMUST00000151148.8	novel	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	5	0	5	0	y	1.00	8	0	8	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	ENSMUSG00000035637.15	Grhpr	chr4	protein_coding	glyoxylate reductase/hydroxypyruvate reductase
novel_NIR_13847	chr4	44983798	44983874	+	44981506	44983874	A5SS	ENSMUST00000151148.8	novel	1.00	6	0	6	0	y	1.00	6	0	6	0	y	1.00	8	0	8	0	y	1.00	6	0	6	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	6	0	6	0	y	1.00	6	0	6	0	y	1.00	5	0	5	0	y	1.00	1	0	1	0	n	ENSMUSG00000035637.15	Grhpr	chr4	protein_coding	glyoxylate reductase/hydroxypyruvate reductase
novel_NIR_13848	chr4	44986390	44986529	+	44986390	44986764	A3SS	ENSMUST00000151631.2	novel	0.25	2	6	2	6	y	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.11	1	8	1	8	n	0.25	1	3	1	3	n	0.17	1	5	1	5	n	0.00	0	21	0	21	n	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	16	0	16	n	0.50	2	2	2	2	y	ENSMUSG00000035637.15	Grhpr	chr4	protein_coding	glyoxylate reductase/hydroxypyruvate reductase
novel_NIR_13849	chr4	45105644	45107549	-	45105644	45106615	A5SS&ES	ENSMUST00000107809.9	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000078713.9	Tomm5	chr4	protein_coding	translocase of outer mitochondrial membrane 5
novel_NIR_13850	chr4	45105644	45107549	-	45105644	45106839	A5SS&ES	ENSMUST00000107808.3	novel	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.20	1	4	1	4	n	0.00	0	7	0	7	n	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.30	3	7	3	7	y	0.00	0	9	0	9	n	ENSMUSG00000078713.9	Tomm5	chr4	protein_coding	translocase of outer mitochondrial membrane 5
novel_NIR_13851	chr4	45105644	45107549	-	45105644	45107917	A5SS	ENSMUST00000107807.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.75	3	1	3	1	y	0.00	0	3	0	3	n	ENSMUSG00000078713.9	Tomm5	chr4	protein_coding	translocase of outer mitochondrial membrane 5
novel_NIR_13852	chr4	45370508	45372698	+	45370508	45372924	A3SS	ENSMUST00000153803.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000035572.17	Dcaf10	chr4	protein_coding	DDB1 and CUL4 associated factor 10
novel_NIR_13853	chr4	45404826	45408695	-	45400179	45408695	A3SS	ENSMUST00000132815.3	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045973.19	Slc25a51	chr4	protein_coding	solute carrier family 25, member 51
novel_NIR_13854	chr4	45404826	45408695	-	45408152	45408695	3pMXE	ENSMUST00000134714.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000045973.19	Slc25a51	chr4	protein_coding	solute carrier family 25, member 51
novel_NIR_13855	chr4	45404835	45406878	-	45404835	45408587	A5SS	ENSMUST00000153904.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000045973.19	Slc25a51	chr4	protein_coding	solute carrier family 25, member 51
novel_NIR_13856	chr4	45489175	45521480	-	45489175	45489671	5pMXE	ENSMUST00000146236.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000044813.16	Shb	chr4	protein_coding	src homology 2 domain-containing transforming protein B
novel_NIR_13857	chr4	45489175	45521480	-	45489175	45492718	5pMXE	ENSMUST00000130107.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000044813.16	Shb	chr4	protein_coding	src homology 2 domain-containing transforming protein B
novel_NIR_13858	chr4	45489175	45521480	-	45489175	45532247	A5SS	ENSMUST00000147448.2	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	4	0	4	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000044813.16	Shb	chr4	protein_coding	src homology 2 domain-containing transforming protein B
novel_NIR_13859	chr4	45489175	45529041	-	45489175	45489671	5pMXE	ENSMUST00000146236.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000044813.16	Shb	chr4	protein_coding	src homology 2 domain-containing transforming protein B
novel_NIR_13860	chr4	45489175	45529041	-	45489175	45492718	5pMXE	ENSMUST00000130107.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000044813.16	Shb	chr4	protein_coding	src homology 2 domain-containing transforming protein B
novel_NIR_13861	chr4	45489175	45529041	-	45489175	45532247	A5SS	ENSMUST00000147448.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000044813.16	Shb	chr4	protein_coding	src homology 2 domain-containing transforming protein B
novel_NIR_13862	chr4	45849097	45852937	+	45849097	45853146	A3SS	ENSMUST00000128947.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.60	3	2	3	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000028327.15	Stra6l	chr4	protein_coding	STRA6-like
novel_NIR_13863	chr4	45849097	45853221	+	45849097	45853146	A3SS	ENSMUST00000128947.2	novel	1.00	2	0	2	0	y	1.00	5	0	5	0	y	0.82	9	2	9	2	y	1.00	9	0	9	0	y	1.00	17	0	17	0	y	0.77	10	3	10	3	y	1.00	9	0	9	0	y	1.00	13	0	13	0	y	0.67	4	2	4	2	y	1.00	7	0	7	0	y	0.71	5	2	5	2	y	1.00	5	0	5	0	y	ENSMUSG00000028327.15	Stra6l	chr4	protein_coding	STRA6-like
novel_NIR_13864	chr4	45849097	45853221	+	45849258	45853221	A5SS	ENSMUST00000107782.8	novel	0.67	2	1	2	1	y	1.00	5	0	5	0	y	0.90	9	1	9	1	y	1.00	9	0	9	0	y	1.00	17	0	17	0	y	1.00	10	0	10	0	y	0.90	9	1	9	1	y	1.00	13	0	13	0	y	0.80	4	1	4	1	y	1.00	7	0	7	0	y	1.00	5	0	5	0	y	1.00	5	0	5	0	y	ENSMUSG00000028327.15	Stra6l	chr4	protein_coding	STRA6-like
novel_NIR_13865	chr4	45849097	45853224	+	45849097	45853146	A3SS	ENSMUST00000128947.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000028327.15	Stra6l	chr4	protein_coding	STRA6-like
novel_NIR_13866	chr4	45849097	45855375	+	45849097;45853366	45853146;45855375	ES	ENSMUST00000128947.2	novel	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	0.84	13	2.5	13	2;3	y	0.67	4	2.0	4	0;4	y	1.00	11	0.0	11	0;0	y	0.00	0	1.5	0	3;0	n	0.60	3	2.0	3	0;4	y	1.00	1	0.0	1	0;0	n	0.67	4	2.0	4	2;2	y	0.92	12	1.0	12	0;2	y	0.80	4	1.0	4	2;0	y	0.82	7	1.5	7	0;3	y	ENSMUSG00000028327.15	Stra6l	chr4	protein_coding	STRA6-like
novel_NIR_13867	chr4	45849258	45853224	+	45849258	45853221	A3SS	ENSMUST00000107782.8	novel	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028327.15	Stra6l	chr4	protein_coding	STRA6-like
novel_NIR_13868	chr4	45858222	45859877	+	45858222	45859971	A3SS	ENSMUST00000107782.8	novel	0.08	1	11	1	11	n	0.09	1	10	1	10	n	0.18	3	14	3	14	y	0.00	0	10	0	10	n	0.05	1	19	1	19	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.13	2	13	2	13	n	0.00	0	13	0	13	n	0.43	3	4	3	4	y	0.00	0	6	0	6	n	0.29	5	12	5	12	y	ENSMUSG00000028327.15	Stra6l	chr4	protein_coding	STRA6-like
novel_NIR_13869	chr4	46507427	46521982	-	46495767	46521982	A3SS	ENSMUST00000136978.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000039853.19	Trim14	chr4	protein_coding	tripartite motif-containing 14
novel_NIR_13870	chr4	46510529	46510720	-	46510529	46523506	A5SS	ENSMUST00000184112.8	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	1	0	1	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.67	2	1	2	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000039853.19	Trim14	chr4	protein_coding	tripartite motif-containing 14
novel_NIR_13871	chr4	46510791	46521982	-	46495767	46521982	A3SS	ENSMUST00000136978.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039853.19	Trim14	chr4	protein_coding	tripartite motif-containing 14
novel_NIR_13872	chr4	46538974	46539546	+	46539440	46539546	A5SS&ES	ENSMUST00000132432.2	novel	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.25	1	3	1	3	n	0.00	0	7	0	7	n	0.20	2	8	2	8	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	ENSMUSG00000085990.2	Gm16731	chr4	lncRNA	predicted gene, 16731
novel_NIR_13873	chr4	46630009	46630207	-	46630009	46637589	A5SS	ENSMUST00000084621.12	novel	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039813.15	Tbc1d2	chr4	protein_coding	TBC1 domain family, member 2
novel_NIR_13874	chr4	46718005	46718786	-	46681328	46718786	A3SS	ENSMUST00000205643.2	novel	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	7	0	7	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	7	0	7	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	3	0	3	0	y	ENSMUSG00000039809.11	Gabbr2	chr4	protein_coding	gamma-aminobutyric acid (GABA) B receptor, 2
novel_NIR_13875	chr4	46718005	46718786	-	46684382	46718786	A3SS	ENSMUST00000107749.4	novel	0.08	2	23	2	23	n	0.20	3	12	3	12	y	0.11	7	58	7	58	n	0.14	3	19	3	19	n	0.19	3	13	3	13	y	0.08	4	48	4	48	n	0.09	2	20	2	20	n	0.19	5	21	5	21	y	0.28	7	18	7	18	y	0.07	2	26	2	26	n	0.19	5	22	5	22	y	0.07	3	40	3	40	n	ENSMUSG00000039809.11	Gabbr2	chr4	protein_coding	gamma-aminobutyric acid (GABA) B receptor, 2
novel_NIR_13876	chr4	48219527	48241296	-	48238366	48241296	3pMXE	ENSMUST00000132927.8	novel	1.00	2	0	2	0	y	1.00	2	0	2	0	y	0.80	4	1	4	1	y	0.75	6	2	6	2	y	0.67	4	2	4	2	y	0.75	3	1	3	1	y	1.00	3	0	3	0	y	0.50	1	1	1	1	n	0.50	1	1	1	1	n	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000028343.11	Erp44	chr4	protein_coding	endoplasmic reticulum protein 44
novel_NIR_13877	chr4	48243549	48276742	-	48243549	48244322	5pMXE	ENSMUST00000132927.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028343.11	Erp44	chr4	protein_coding	endoplasmic reticulum protein 44
novel_NIR_13878	chr4	48283355	48289211	+	48283355	48307683	A3SS	ENSMUST00000156602.2	novel	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.07	1	13	1	13	n	0.23	3	10	3	10	y	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.08	1	11	1	11	n	0.00	0	15	0	15	n	0.00	0	8	0	8	n	0.00	0	16	0	16	n	ENSMUSG00000028344.13	Invs	chr4	protein_coding	inversin
novel_NIR_13879	chr4	48307849	48344572	+	48307849	48382105	A3SS	ENSMUST00000030029.10	novel	0.00	0	7	0	7	n	0.40	2	3	2	3	n	0.00	0	6	0	6	n	0.20	2	8	2	8	y	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.26	5	14	5	14	y	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.00	0	7	0	7	n	ENSMUSG00000028344.13	Invs	chr4	protein_coding	inversin
novel_NIR_13880	chr4	48307849	48372846	+	48307849	48382105	A3SS	ENSMUST00000030029.10	novel	0.22	2	7	2	7	y	0.00	0	3	0	3	n	0.33	3	6	3	6	y	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.12	2	14	2	14	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.50	4	4	4	4	y	0.30	3	7	3	7	y	ENSMUSG00000028344.13	Invs	chr4	protein_coding	inversin
novel_NIR_13881	chr4	48344687	48382105	+	48307849	48382105	A5SS	ENSMUST00000030029.10	novel	0.00	0	7	0	7	n	0.25	1	3	1	3	n	0.40	4	6	4	6	y	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.22	2	7	2	7	y	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.20	1	4	1	4	n	0.43	3	4	3	4	n	0.00	0	7	0	7	n	ENSMUSG00000028344.13	Invs	chr4	protein_coding	inversin
novel_NIR_13882	chr4	48372943	48382105	+	48307849	48382105	A5SS	ENSMUST00000030029.10	novel	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.31	4	9	4	9	y	0.00	0	7	0	7	n	0.08	1	12	1	12	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	ENSMUSG00000028344.13	Invs	chr4	protein_coding	inversin
novel_NIR_13883	chr4	49383576	49384116	-	49383576	49405691	A5SS	ENSMUST00000125123.2	novel	1.00	4	0	4	0	y	1.00	2	0	2	0	y	0.57	12	9	12	9	y	1.00	3	0	3	0	y	0.38	5	8	5	8	y	0.18	2	9	2	9	n	1.00	2	0	2	0	y	0.56	9	7	9	7	n	0.17	1	5	1	5	n	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	ENSMUSG00000060317.10	Acnat2	chr4	protein_coding	acyl-coenzyme A amino acid N-acyltransferase 2
novel_NIR_13884	chr4	49383576	49384116	-	49383576	49407663	A5SS	ENSMUST00000081541.9	novel	0.19	4	17	4	17	n	0.29	2	5	2	5	y	0.29	12	30	12	30	n	0.27	3	8	3	8	y	0.25	5	15	5	15	y	0.06	2	30	2	30	n	0.11	2	16	2	16	n	0.30	9	21	9	21	y	0.09	1	10	1	10	n	0.33	4	8	4	8	y	0.22	2	7	2	7	n	0.38	3	5	3	5	y	ENSMUSG00000060317.10	Acnat2	chr4	protein_coding	acyl-coenzyme A amino acid N-acyltransferase 2
novel_NIR_13885	chr4	49383576	49406930	-	49383576	49405691	5pMXE	ENSMUST00000125123.2	novel	1.00	1	0	1	0	n	1.00	4	0	4	0	y	0.18	2	9	2	9	y	1.00	3	0	3	0	y	0.00	0	8	0	8	n	0.10	1	9	1	9	n	1.00	2	0	2	0	y	0.12	1	7	1	7	n	0.17	1	5	1	5	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000060317.10	Acnat2	chr4	protein_coding	acyl-coenzyme A amino acid N-acyltransferase 2
novel_NIR_13886	chr4	49383576	49406930	-	49383576	49407663	A5SS	ENSMUST00000081541.9	novel	0.06	1	17	1	17	n	0.44	4	5	4	5	y	0.06	2	30	2	30	n	0.27	3	8	3	8	y	0.00	0	15	0	15	n	0.03	1	30	1	30	n	0.11	2	16	2	16	n	0.05	1	21	1	21	n	0.09	1	10	1	10	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	ENSMUSG00000060317.10	Acnat2	chr4	protein_coding	acyl-coenzyme A amino acid N-acyltransferase 2
novel_NIR_13887	chr4	49383576;49384220	49384116;49407663	-	49383576	49407663	cassetteExon	ENSMUST00000081541.9	novel	0.13	2.5	17	4;1	17	n	0.17	1.0	5	2;0	5	n	0.24	9.5	30	12;7	30	y	0.16	1.5	8	3;0	8	n	0.14	2.5	15	5;0	15	n	0.03	1.0	30	2;0	30	n	0.09	1.5	16	2;1	16	n	0.18	4.5	21	9;0	21	n	0.13	1.5	10	1;2	10	n	0.20	2.0	8	4;0	8	n	0.30	3.0	7	2;4	7	y	0.23	1.5	5	3;0	5	n	ENSMUSG00000060317.10	Acnat2	chr4	protein_coding	acyl-coenzyme A amino acid N-acyltransferase 2
novel_NIR_13888	chr4	49407728	49407890	-	49407728	49408116	A5SS	ENSMUST00000081541.9	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.50	11	11	11	11	y	0.00	0	5	0	5	n	0.25	2	6	2	6	y	0.15	3	17	3	17	y	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.33	4	8	4	8	y	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	ENSMUSG00000060317.10	Acnat2	chr4	protein_coding	acyl-coenzyme A amino acid N-acyltransferase 2
novel_NIR_13889	chr4	49451134	49473804	-	49451134	49458720	A5SS&ES	ENSMUST00000135976.2	novel	0.00	0	27	0	27	n	0.06	1	17	1	17	n	0.00	0	23	0	23	n	0.00	0	34	0	34	n	0.00	0	45	0	45	n	0.17	2	10	2	10	y	0.00	0	39	0	39	n	0.00	0	30	0	30	n	0.00	0	26	0	26	n	0.00	0	22	0	22	n	0.00	0	5	0	5	n	0.00	0	34	0	34	n	ENSMUSG00000070985.4	Acnat1	chr4	protein_coding	acyl-coenzyme A amino acid N-acyltransferase 1
novel_NIR_13890	chr4	49458849	49473804	-	49458849	49473418	A5SS&ES	ENSMUST00000135976.2	novel	0.00	0	3	0	3	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.14	1	6	1	6	n	0.00	0	7	0	7	n	0.33	1	2	1	2	n	0.00	0	13	0	13	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.44	4	5	4	5	y	ENSMUSG00000070985.4	Acnat1	chr4	protein_coding	acyl-coenzyme A amino acid N-acyltransferase 1
novel_NIR_13891	chr4	49458849	49480594	-	49458849	49473418	5pMXE	ENSMUST00000150392.2	novel	0.91	29	3	29	3	y	0.67	12	6	12	6	y	1.00	22	0	22	0	y	0.79	23	6	23	6	y	0.83	35	7	35	7	y	0.88	15	2	15	2	y	0.65	24	13	24	13	y	0.94	31	2	31	2	y	0.70	19	8	19	8	y	0.83	19	4	19	4	y	0.84	27	5	27	5	y	0.81	21	5	21	5	y	ENSMUSG00000070985.4	Acnat1	chr4	protein_coding	acyl-coenzyme A amino acid N-acyltransferase 1
novel_NIR_13892	chr4	49458849	49480661	-	49458849	49473418	5pMXE	ENSMUST00000150392.2	novel	0.67	6	3	6	3	y	0.50	6	6	6	6	y	1.00	7	0	7	0	y	0.00	0	6	0	6	n	0.71	17	7	17	7	y	0.33	1	2	1	2	n	0.59	19	13	19	13	y	0.89	17	2	17	2	y	0.38	5	8	5	8	y	0.60	6	4	6	4	y	0.55	6	5	6	5	y	0.38	3	5	3	5	y	ENSMUSG00000070985.4	Acnat1	chr4	protein_coding	acyl-coenzyme A amino acid N-acyltransferase 1
novel_NIR_13893	chr4	49473470	49473783	-	49473522	49473783	A3SS	ENSMUST00000135976.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000070985.4	Acnat1	chr4	protein_coding	acyl-coenzyme A amino acid N-acyltransferase 1
novel_NIR_13894	chr4	49490413	49502655	-	49490413;49499838	49499636;49502655	ES	ENSMUST00000043056.9	novel	0.10	43	387.5	43	461;314	n	0.13	41	280.0	41	305;255	n	0.11	58	472.5	58	529;416	n	0.10	45	418.5	45	432;405	n	0.12	79	588.5	79	658;519	n	0.15	43	247.5	43	262;233	y	0.12	58	439.0	58	474;404	n	0.12	38	271.5	38	306;237	n	0.09	39	403.5	39	441;366	n	0.10	61	548.5	61	599;498	n	0.12	50	384.0	50	436;332	n	0.10	58	507.0	58	572;442	n	ENSMUSG00000039653.10	Baat	chr4	protein_coding	bile acid-Coenzyme A: amino acid N-acyltransferase
novel_NIR_13895	chr4	49632489	49633254	+	49632512	49633254	A5SS	ENSMUST00000140341.8	novel	0.00	0	11	0	11	n	0.17	1	5	1	5	n	0.09	2	21	2	21	n	0.05	1	19	1	19	n	0.03	1	32	1	32	n	0.00	0	17	0	17	n	0.07	1	13	1	13	n	0.00	0	17	0	17	n	0.16	4	21	4	21	y	0.04	1	23	1	23	n	0.00	0	8	0	8	n	0.00	0	20	0	20	n	ENSMUSG00000028309.15	Rnf20	chr4	protein_coding	ring finger protein 20
novel_NIR_13896	chr4	49638334	49638674	+	49638334	49638625	A3SS	ENSMUST00000140341.8	novel	0.00	0	14	0	14	n	0.00	0	14	0	14	n	0.00	0	33	0	33	n	0.00	0	30	0	30	n	0.00	0	19	0	19	n	0.00	0	19	0	19	n	0.00	0	19	0	19	n	0.00	0	18	0	18	n	0.00	0	9	0	9	n	0.00	0	27	0	27	n	0.18	3	14	3	14	y	0.06	2	34	2	34	n	ENSMUSG00000028309.15	Rnf20	chr4	protein_coding	ring finger protein 20
novel_NIR_13897	chr4	53017207	53020185	+	53017207	53021111	A3SS	ENSMUST00000107665.4	novel	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	11	0	11	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.55	6	5	6	5	y	0.00	0	4	0	4	n	-	-	-	-	-	-	ENSMUSG00000015247.11	Nipsnap3b	chr4	protein_coding	nipsnap homolog 3B
novel_NIR_13898	chr4	53144095	53144223	-	53144095	53159676	A5SS	ENSMUST00000030010.4	novel	0.12	1	7	1	7	n	0.00	0	4	0	4	n	0.09	4	39	4	39	n	0.23	5	17	5	17	y	0.06	1	15	1	15	n	0.33	6	12	6	12	y	0.09	1	10	1	10	n	0.04	1	26	1	26	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	24	0	24	n	ENSMUSG00000015243.5	Abca1	chr4	protein_coding	ATP-binding cassette, sub-family A (ABC1), member 1
novel_NIR_13899	chr4	53481553	53491410	+	53481553	53517545	A3SS	ENSMUST00000136607.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000028412.18	Slc44a1	chr4	protein_coding	solute carrier family 44, member 1
novel_NIR_13900	chr4	53840783	53843405	+	53840783	53847477	A3SS	ENSMUST00000151206.2	novel	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.50	6	6	6	6	y	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000028420.14	Tmem38b	chr4	protein_coding	transmembrane protein 38B
novel_NIR_13901	chr4	53840783	53848898	+	53840783	53847477	3pMXE	ENSMUST00000151206.2	novel	0.00	0	3	0	3	n	0.67	4	2	4	2	y	0.33	3	6	3	6	y	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.62	5	3	5	3	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000028420.14	Tmem38b	chr4	protein_coding	transmembrane protein 38B
novel_NIR_13902	chr4	56795578	56796504	-	56795586	56796504	A3SS	ENSMUST00000030140.3	novel	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	19	0	19	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.27	3	8	3	8	y	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	ENSMUSG00000028431.12	Elp1	chr4	protein_coding	elongator complex protein 1
novel_NIR_13903	chr4	56904126	56906215	-	56904049	56906215	A3SS	ENSMUST00000068792.13	novel	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	20	0	20	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.00	0	5	0	5	n	0.25	3	9	3	9	y	0.00	0	3	0	3	n	0.00	0	16	0	16	n	ENSMUSG00000055296.15	Tmem245	chr4	protein_coding	transmembrane protein 245
novel_NIR_13904	chr4	57063239	57064799	-	57041052	57064799	A3SS	ENSMUST00000095076.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028434.13	Epb41l4b	chr4	protein_coding	erythrocyte membrane protein band 4.1 like 4b
novel_NIR_13905	chr4	57068338	57073262	-	57068338	57070309	5pMXE	ENSMUST00000150665.2	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028434.13	Epb41l4b	chr4	protein_coding	erythrocyte membrane protein band 4.1 like 4b
novel_NIR_13906	chr4	57070030	57070309	-	57068338	57070309	A3SS	ENSMUST00000150665.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028434.13	Epb41l4b	chr4	protein_coding	erythrocyte membrane protein band 4.1 like 4b
novel_NIR_13907	chr4	57103528	57104178	-	57103528	57119919	A5SS	ENSMUST00000133859.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028434.13	Epb41l4b	chr4	protein_coding	erythrocyte membrane protein band 4.1 like 4b
novel_NIR_13908	chr4	57103528	57104178	-	57103528	57138028	A5SS	ENSMUST00000136337.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000028434.13	Epb41l4b	chr4	protein_coding	erythrocyte membrane protein band 4.1 like 4b
novel_NIR_13909	chr4	57270177	57284926	-	57270177	57282480	A5SS&ES	ENSMUST00000151964.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038764.15	Ptpn3	chr4	protein_coding	protein tyrosine phosphatase, non-receptor type 3
novel_NIR_13910	chr4	57270177	57284926	-	57270177	57301324	A5SS	ENSMUST00000130900.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038764.15	Ptpn3	chr4	protein_coding	protein tyrosine phosphatase, non-receptor type 3
novel_NIR_13911	chr4	57270177	57284926	-	57270177	57301672	A5SS	ENSMUST00000075637.11	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	9	0	9	n	ENSMUSG00000038764.15	Ptpn3	chr4	protein_coding	protein tyrosine phosphatase, non-receptor type 3
novel_NIR_13912	chr4	57270177	57299633	-	57270177	57282480	A5SS&ES	ENSMUST00000151964.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038764.15	Ptpn3	chr4	protein_coding	protein tyrosine phosphatase, non-receptor type 3
novel_NIR_13913	chr4	57270177	57299633	-	57270177	57300593	A5SS	ENSMUST00000150445.2	novel	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.40	2	3	2	3	y	0.00	0	13	0	13	n	0.00	0	15	0	15	n	0.20	1	4	1	4	n	0.11	1	8	1	8	n	0.00	0	15	0	15	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	ENSMUSG00000038764.15	Ptpn3	chr4	protein_coding	protein tyrosine phosphatase, non-receptor type 3
novel_NIR_13914	chr4	57270177	57299633	-	57270177	57301324	A5SS	ENSMUST00000130900.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038764.15	Ptpn3	chr4	protein_coding	protein tyrosine phosphatase, non-receptor type 3
novel_NIR_13915	chr4	57270177	57299633	-	57270177	57301672	A5SS	ENSMUST00000075637.11	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.00	0	8	0	8	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	9	0	9	n	ENSMUSG00000038764.15	Ptpn3	chr4	protein_coding	protein tyrosine phosphatase, non-receptor type 3
novel_NIR_13916	chr4	59315805	59318428	-	59315805	59324868	A5SS	ENSMUST00000040166.14	novel	0.00	0	18	0	18	n	0.00	0	9	0	9	n	0.03	1	39	1	39	n	0.08	1	11	1	11	n	0.00	0	31	0	31	n	0.00	0	19	0	19	n	0.00	0	19	0	19	n	0.00	0	17	0	17	n	0.12	1	7	1	7	n	0.00	0	17	0	17	n	0.00	0	13	0	13	n	0.17	2	10	2	10	y	ENSMUSG00000038578.16	Susd1	chr4	protein_coding	sushi domain containing 1
novel_NIR_13917	chr4	59329659	59332937	-	59329721	59332937	A3SS	ENSMUST00000040166.14	novel	0.09	2	21	2	21	n	0.12	2	14	2	14	n	0.14	28	168	28	168	n	0.00	0	27	0	27	n	0.03	1	38	1	38	n	0.12	7	49	7	49	n	0.10	3	28	3	28	n	0.26	9	26	9	26	y	0.11	3	25	3	25	n	0.07	2	26	2	26	n	0.11	2	17	2	17	n	0.24	8	25	8	25	y	ENSMUSG00000038578.16	Susd1	chr4	protein_coding	sushi domain containing 1
novel_NIR_13918	chr4	59329721	59329873	-	59329721	59332937	A5SS	ENSMUST00000040166.14	novel	0.00	0	21	0	21	n	0.00	0	14	0	14	n	0.00	0	168	0	168	n	0.00	0	27	0	27	n	0.00	0	38	0	38	n	0.00	0	49	0	49	n	0.00	0	28	0	28	n	0.00	0	26	0	26	n	0.00	0	25	0	25	n	0.16	5	26	5	26	y	0.00	0	17	0	17	n	0.14	4	25	4	25	n	ENSMUSG00000038578.16	Susd1	chr4	protein_coding	sushi domain containing 1
novel_NIR_13919	chr4	59329721	59329952	-	59329721	59332937	A5SS	ENSMUST00000040166.14	novel	0.19	5	21	5	21	y	0.42	10	14	10	14	y	0.06	10	168	10	168	n	0.21	7	27	7	27	y	0.17	8	38	8	38	y	0.08	4	49	4	49	n	0.26	10	28	10	28	y	0.16	5	26	5	26	y	0.38	15	25	15	25	y	0.41	18	26	18	26	y	0.15	3	17	3	17	y	0.24	8	25	8	25	y	ENSMUSG00000038578.16	Susd1	chr4	protein_coding	sushi domain containing 1
novel_NIR_13920	chr4	59329721	59329956	-	59329721	59332937	A5SS	ENSMUST00000040166.14	novel	0.00	0	21	0	21	n	0.30	6	14	6	14	y	0.03	5	168	5	168	n	0.00	0	27	0	27	n	0.07	3	38	3	38	n	0.06	3	49	3	49	n	0.03	1	28	1	28	n	0.07	2	26	2	26	n	0.00	0	25	0	25	n	0.19	6	26	6	26	y	0.15	3	17	3	17	y	0.11	3	25	3	25	n	ENSMUSG00000038578.16	Susd1	chr4	protein_coding	sushi domain containing 1
novel_NIR_13921	chr4	59333033	59333155	-	59333033	59349826	A5SS	ENSMUST00000040166.14	novel	0.72	18	7	18	7	y	0.79	11	3	11	3	y	0.98	182	4	182	4	y	0.71	10	4	10	4	y	0.84	51	10	51	10	y	0.90	45	5	45	5	y	0.61	27	17	27	17	y	0.91	52	5	52	5	y	0.40	6	9	6	9	y	0.41	12	17	12	17	y	0.60	9	6	9	6	y	0.72	36	14	36	14	y	ENSMUSG00000038578.16	Susd1	chr4	protein_coding	sushi domain containing 1
novel_NIR_13922	chr4	59411057	59411270	-	59390752	59411270	A3SS	ENSMUST00000040166.14	novel	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	16	0	16	n	0.33	7	14	7	14	y	-	-	-	-	-	-	0.00	0	12	0	12	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	15	0	15	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	ENSMUSG00000038578.16	Susd1	chr4	protein_coding	sushi domain containing 1
novel_NIR_13923	chr4	59581775	59592159	+	59581775	59586320	A3SS&ES	ENSMUST00000107528.8	novel	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	9	0	9	0	y	1.00	5	0	5	0	y	1.00	5	0	5	0	y	1.00	5	0	5	0	y	0.86	6	1	6	1	y	1.00	6	0	6	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	5	0	5	0	y	1.00	4	0	4	0	y	ENSMUSG00000028383.18	Hsdl2	chr4	protein_coding	hydroxysteroid dehydrogenase like 2
novel_NIR_13924	chr4	59582538	59592155	+	59586417	59592155	A5SS&ES	ENSMUST00000107528.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.83	5	1	5	1	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000028383.18	Hsdl2	chr4	protein_coding	hydroxysteroid dehydrogenase like 2
novel_NIR_13925	chr4	59592318	59594396	+	59592318;59593335	59593237;59594396	ES	ENSMUST00000030078.12	novel	0.06	6	93.5	6	115;72	n	0.07	6	82.0	6	86;78	n	0.07	14	191.0	14	224;158	n	0.10	21	184.0	21	212;156	n	0.09	17	182.0	17	203;161	n	0.04	4	102.0	4	115;89	n	0.07	16	229.0	16	256;202	n	0.05	8	156.5	8	167;146	n	0.21	22	84.0	22	96;72	y	0.09	20	192.0	20	222;162	n	0.12	15	107.5	15	122;93	n	0.07	12	167.5	12	194;141	n	ENSMUSG00000028383.18	Hsdl2	chr4	protein_coding	hydroxysteroid dehydrogenase like 2
novel_NIR_13926	chr4	59737734	59752243	+	59737734	59752233	A3SS	ENSMUST00000070150.11	novel	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.15	2	11	2	11	y	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.08	1	12	1	12	n	ENSMUSG00000045071.15	E130308A19Rik	chr4	protein_coding	RIKEN cDNA E130308A19 gene
novel_NIR_13927	chr4	59846550	59857445	+	59806225	59857445	A5SS	ENSMUST00000030080.7	novel	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	ENSMUSG00000028385.15	Snx30	chr4	protein_coding	sorting nexin family member 30
novel_NIR_13928	chr4	59868355	59879222	+	59868348	59879222	A5SS	ENSMUST00000030080.7	novel	0.00	0	11	0	11	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.33	2	4	2	4	y	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.20	1	4	1	4	n	0.00	0	6	0	6	n	ENSMUSG00000028385.15	Snx30	chr4	protein_coding	sorting nexin family member 30
novel_NIR_13929	chr4	60006234	60089378	+	60006234	60007020	3pMXE	ENSMUST00000107521.8	novel	0.78	14	4	14	4	y	0.74	20	7	20	7	y	0.85	40	7	40	7	y	0.86	60	10	60	10	y	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.77	27	8	27	8	y	0.00	0	5	0	5	n	0.71	17	7	17	7	y	0.88	56	8	56	8	y	0.00	0	11	0	11	n	0.65	11	6	11	6	y	ENSMUSG00000078689.9	Mup6	chr4	protein_coding	major urinary protein 6
novel_NIR_13930	chr4	60006234	60158767	+	60006234	60007020	3pMXE	ENSMUST00000107521.8	novel	0.00	0	4	0	4	n	0.50	7	7	7	7	y	0.30	3	7	3	7	y	0.67	20	10	20	10	y	0.61	17	11	17	11	y	0.83	10	2	10	2	y	0.68	17	8	17	8	y	0.00	0	5	0	5	n	0.77	24	7	24	7	y	0.60	12	8	12	8	y	0.74	31	11	31	11	y	0.57	8	6	8	6	y	ENSMUSG00000078689.9	Mup6	chr4	protein_coding	major urinary protein 6
novel_NIR_13931	chr4	60006234	60244828	+	60006234	60007020	3pMXE	ENSMUST00000107521.8	novel	0.98	201	4	201	4	y	0.95	143	7	143	7	y	0.92	76	7	76	7	y	0.90	94	10	94	10	y	0.97	313	11	313	11	y	0.99	139	2	139	2	y	0.95	141	8	141	8	y	0.95	89	5	89	5	y	0.97	219	7	219	7	y	0.94	116	8	116	8	y	0.96	301	11	301	11	y	0.93	82	6	82	6	y	ENSMUSG00000078689.9	Mup6	chr4	protein_coding	major urinary protein 6
novel_NIR_13932	chr4	60006234	60396860	+	60006234	60007020	3pMXE	ENSMUST00000107521.8	novel	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.22	2	7	2	7	y	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.11	1	8	1	8	n	0.17	1	5	1	5	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.35	6	11	6	11	y	0.00	0	6	0	6	n	ENSMUSG00000078689.9	Mup6	chr4	protein_coding	major urinary protein 6
novel_NIR_13933	chr4	60006234	60396961	+	60006234	60007020	3pMXE	ENSMUST00000107521.8	novel	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.27	3	8	3	8	y	0.00	0	11	0	11	n	0.00	0	6	0	6	n	ENSMUSG00000078689.9	Mup6	chr4	protein_coding	major urinary protein 6
novel_NIR_13934	chr4	60006234	60476975	+	60006234	60007020	3pMXE	ENSMUST00000107521.8	novel	0.33	2	4	2	4	y	0.61	11	7	11	7	y	0.30	3	7	3	7	y	0.33	5	10	5	10	y	0.39	7	11	7	11	y	0.33	1	2	1	2	n	0.00	0	8	0	8	n	0.44	4	5	4	5	y	0.67	14	7	14	7	y	0.38	5	8	5	8	y	0.56	14	11	14	11	y	0.25	2	6	2	6	y	ENSMUSG00000078689.9	Mup6	chr4	protein_coding	major urinary protein 6
novel_NIR_13935	chr4	60066795	60067720	-	60067596	60067720	A3SS&ES	ENSMUST00000166098.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	10	0	10	n	-	-	-	-	-	-	ENSMUSG00000073842.11	Mup7	chr4	protein_coding	major urinary protein 7
novel_NIR_13936	chr4	60073327	60155695	+	60155360	60155695	5pMXE	ENSMUST00000142602.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000073840.7	Mup-ps2	chr4	unprocessed_pseudogene	major urinary protein, pseudogene 2
novel_NIR_13937	chr4	60139780	60140650	-	60139352	60140650	A3SS	ENSMUST00000148940.2	novel	0.00	0	27	0	27	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	70	0	70	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	70	0	70	n	0.22	16	56	16	56	y	0.00	0	70	0	70	n	0.00	0	29	0	29	n	ENSMUSG00000078688.12	Mup2	chr4	protein_coding	major urinary protein 2
novel_NIR_13938	chr4	60376559	60537520	-	60376559	60377790	5pMXE	ENSMUST00000132829.3	novel	0.49	40	41	40	41	y	0.14	8	51	8	51	n	0.84	38	7	38	7	y	0.57	74	56	74	56	y	0.75	75	25	75	25	y	1.00	11	0	11	0	y	0.69	45	20	45	20	y	0.93	14	1	14	1	y	0.47	60	69	60	69	y	0.18	20	93	20	93	y	0.14	13	83	13	83	n	0.62	29	18	29	18	y	ENSMUSG00000078686.12	Mup9	chr4	protein_coding	major urinary protein 9
novel_NIR_13939	chr4	60472626	60473895	+	60473558	60473895	5pMXE	ENSMUST00000179564.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000094222.2	Mup-ps6	chr4	transcribed_unprocessed_pseudogene	major urinary protein, pseudogene 6
novel_NIR_13940	chr4	60474028	60475431	+	60460905	60475431	A5SS	ENSMUST00000156693.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.38	3	5	3	5	y	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000086253.2	Gm13773	chr4	lncRNA	predicted gene 13773
novel_NIR_13941	chr4	60474028	60475431	+	60474028;60474872	60474800;60475431	ES	ENSMUST00000179564.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0.0	3	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000094222.2	Mup-ps6	chr4	transcribed_unprocessed_pseudogene	major urinary protein, pseudogene 6
novel_NIR_13942	chr4	60616960	60776847	-	60616960	60618201	5pMXE	ENSMUST00000084544.5	novel	0.67	20	10	20	10	y	0.00	0	8	0	8	n	1.00	17	0	17	0	y	0.80	47	12	47	12	y	0.75	24	8	24	8	y	1.00	30	0	30	0	y	0.70	19	8	19	8	y	1.00	3	0	3	0	y	0.83	101	21	101	21	y	0.23	10	33	10	33	y	0.68	52	24	52	24	y	0.89	16	2	16	2	y	ENSMUSG00000073834.11	Mup11	chr4	protein_coding	major urinary protein 11
novel_NIR_13943	chr4	60632851	60634116	+	60633780	60634116	5pMXE	ENSMUST00000178292.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	7	0	7	0	y	-	-	-	-	-	-	ENSMUSG00000094743.3	Mup-ps7	chr4	unprocessed_pseudogene	major urinary protein, pseudogene 7
novel_NIR_13944	chr4	60715335	60716326	+	60715335	60715500	3pMXE	ENSMUST00000178663.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.75	3	1	3	1	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000096891.2	Mup-ps8	chr4	unprocessed_pseudogene	major urinary protein, pseudogene 8
novel_NIR_13945	chr4	61434867	61750579	-	61749806	61750579	3pMXE	ENSMUST00000082287.3	novel	0.24	8	25	8	25	y	0.00	0	22	0	22	n	0.00	0	19	0	19	n	0.00	0	45	0	45	n	0.00	0	33	0	33	n	0.00	0	34	0	34	n	0.00	0	40	0	40	n	0.00	0	18	0	18	n	0.21	7	27	7	27	y	0.00	0	34	0	34	n	0.00	0	44	0	44	n	0.00	0	8	0	8	n	ENSMUSG00000058523.3	Mup5	chr4	protein_coding	major urinary protein 5
novel_NIR_13946	chr4	61511251	61875576	-	61875411	61875576	3pMXE	ENSMUST00000120390.2	novel	0.14	40	252	40	252	n	0.07	45	605	45	605	n	0.20	29	118	29	118	y	0.24	62	201	62	201	y	0.17	64	305	64	305	y	0.13	22	150	22	150	n	0.14	46	272	46	272	n	0.17	15	75	15	75	y	0.17	52	248	52	248	y	0.18	73	327	73	327	y	0.15	57	313	57	313	y	0.11	41	336	41	336	n	ENSMUSG00000082644.2	Mup-ps19	chr4	unprocessed_pseudogene	major urinary protein, pseudogene 19
novel_NIR_13947	chr4	61527082	61528477	+	61527082;61527922	61527850;61528477	ES	ENSMUST00000118437.2	novel	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	10	0.0	10	0;0	y	1.00	5	0.0	5	0;0	y	1.00	8	0.0	8	0;0	y	-	-	-	-	-	-	ENSMUSG00000082065.2	Mup-ps14	chr4	unprocessed_pseudogene	major urinary protein, pseudogene 14
novel_NIR_13948	chr4	61529030	61530021	+	61529030	61529195	3pMXE	ENSMUST00000118437.2	novel	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000082065.2	Mup-ps14	chr4	unprocessed_pseudogene	major urinary protein, pseudogene 14
novel_NIR_13949	chr4	61703245	61718183	+	61716336	61718183	A5SS&ES	ENSMUST00000153865.2	novel	0.05	1	19	1	19	n	0.00	0	21	0	21	n	-	-	-	-	-	-	0.06	2	32	2	32	n	0.40	2	3	2	3	y	-	-	-	-	-	-	0.06	1	17	1	17	n	0.00	0	1	0	1	n	0.07	3	43	3	43	n	0.01	1	80	1	80	n	0.02	2	86	2	86	n	0.08	2	23	2	23	n	ENSMUSG00000081207.5	Gm13775	chr4	lncRNA	predicted gene 13775
novel_NIR_13950	chr4	61716336	61717692	+	61716336	61717104	A3SS&ES	ENSMUST00000120085.2	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	12	0	12	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	8	0	8	0	y	1.00	15	0	15	0	y	1.00	18	0	18	0	y	1.00	6	0	6	0	y	ENSMUSG00000090090.2	Mup-ps16	chr4	unprocessed_pseudogene	major urinary protein, pseudogene 16
novel_NIR_13951	chr4	61716336	61717692	+	61716336	61718183	A3SS	ENSMUST00000153865.2	novel	0.05	1	19	1	19	n	0.09	2	21	2	21	n	-	-	-	-	-	-	0.27	12	32	12	32	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.15	3	17	3	17	y	0.00	0	1	0	1	n	0.16	8	43	8	43	y	0.16	15	80	15	80	y	0.17	18	86	18	86	y	0.21	6	23	6	23	y	ENSMUSG00000081207.5	Gm13775	chr4	lncRNA	predicted gene 13775
novel_NIR_13952	chr4	61716336	61717729	+	61716336	61717104	A3SS&ES	ENSMUST00000120085.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	8	0	8	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000090090.2	Mup-ps16	chr4	unprocessed_pseudogene	major urinary protein, pseudogene 16
novel_NIR_13953	chr4	61716336	61717729	+	61716336	61718183	A3SS	ENSMUST00000153865.2	novel	0.00	0	19	0	19	n	0.00	0	21	0	21	n	-	-	-	-	-	-	0.20	8	32	8	32	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	17	0	17	n	0.00	0	1	0	1	n	0.00	0	43	0	43	n	0.04	3	80	3	80	n	0.00	0	86	0	86	n	0.00	0	23	0	23	n	ENSMUSG00000081207.5	Gm13775	chr4	lncRNA	predicted gene 13775
novel_NIR_13954	chr4	61749806	61750789	-	61749806;61750624	61750579;61750789	ES	ENSMUST00000082287.3	novel	0.00	0	40.0	0	25;55	n	0.00	0	41.5	0	22;61	n	0.00	0	41.0	0	19;63	n	0.04	3	68.0	3	45;91	n	0.00	0	66.0	0	33;99	n	0.00	0	41.0	0	34;48	n	0.00	0	64.0	0	40;88	n	0.00	0	31.0	0	18;44	n	0.00	0	43.5	0	27;60	n	0.00	0	66.0	0	34;98	n	0.00	0	75.0	0	44;106	n	0.17	3	15.0	3	8;22	y	ENSMUSG00000058523.3	Mup5	chr4	protein_coding	major urinary protein 5
novel_NIR_13955	chr4	61875411	61947769	-	61947604	61947769	3pMXE	ENSMUST00000119998.2	novel	0.26	5	14	5	14	y	0.25	3	9	3	9	y	0.00	0	6	0	6	n	0.08	1	12	1	12	n	0.06	1	15	1	15	n	0.00	0	4	0	4	n	0.67	8	4	8	4	y	-	-	-	-	-	-	0.15	2	11	2	11	y	0.00	0	14	0	14	n	0.35	6	11	6	11	y	0.00	0	11	0	11	n	ENSMUSG00000083524.2	Mup-ps21	chr4	unprocessed_pseudogene	major urinary protein, pseudogene 21
novel_NIR_13956	chr4	61876110	61931697	-	61930743	61931697	3pMXE	ENSMUST00000121132.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	9	0	9	0	y	1.00	8	0	8	0	y	ENSMUSG00000084309.2	Mup-ps20	chr4	unprocessed_pseudogene	major urinary protein, pseudogene 20
novel_NIR_13957	chr4	61930743	61931275	-	61930743	61931697	A5SS	ENSMUST00000121132.2	novel	1.00	37	0	37	0	y	1.00	45	0	45	0	y	1.00	3	0	3	0	y	1.00	127	0	127	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	15	0	15	0	y	-	-	-	-	-	-	1.00	31	0	31	0	y	1.00	136	0	136	0	y	1.00	26	0	26	0	y	1.00	17	0	17	0	y	ENSMUSG00000084309.2	Mup-ps20	chr4	unprocessed_pseudogene	major urinary protein, pseudogene 20
novel_NIR_13958	chr4	62001964	62003000	-	62001964	62002655	A5SS&ES	ENSMUST00000107488.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000066154.12	Mup3	chr4	protein_coding	major urinary protein 3
novel_NIR_13959	chr4	62006646	62008347	+	62006646;62008216	62008134;62008347	ES	ENSMUST00000134190.2	novel	0.50	5	5.0	5	2;8	y	0.40	3	4.5	3	5;4	y	0.50	4	4.0	4	7;1	y	0.76	25	8.0	25	4;12	y	0.70	13	5.5	13	5;6	y	0.43	3	4.0	3	3;5	y	0.62	14	8.5	14	8;9	y	0.69	11	5.0	11	7;3	y	0.81	27	6.5	27	5;8	y	0.67	22	11.0	22	12;10	y	0.65	20	11.0	20	9;13	y	0.49	14	14.5	14	20;9	y	ENSMUSG00000085404.2	Gm12909	chr4	lncRNA	predicted gene 12909
novel_NIR_13960	chr4	62006646	62008359	+	62006646	62008134	A3SS&ES	ENSMUST00000134190.2	novel	0.90	18	2	18	2	y	0.85	29	5	29	5	y	0.36	4	7	4	7	y	0.83	19	4	19	4	y	0.67	10	5	10	5	y	0.40	2	3	2	3	y	0.71	20	8	20	8	y	0.63	12	7	12	7	y	0.81	22	5	22	5	y	0.70	28	12	28	12	y	0.69	20	9	20	9	y	0.66	39	20	39	20	y	ENSMUSG00000085404.2	Gm12909	chr4	lncRNA	predicted gene 12909
novel_NIR_13961	chr4	62008216	62008359	+	62008216	62008347	A3SS	ENSMUST00000134190.2	novel	0.33	4	8	4	8	y	0.60	6	4	6	4	y	0.86	6	1	6	1	y	0.29	5	12	5	12	y	0.25	2	6	2	6	y	0.38	3	5	3	5	y	0.25	3	9	3	9	y	0.25	1	3	1	3	n	0.47	7	8	7	8	y	0.29	4	10	4	10	y	0.35	7	13	7	13	y	0.59	13	9	13	9	y	ENSMUSG00000085404.2	Gm12909	chr4	lncRNA	predicted gene 12909
novel_NIR_13962	chr4	6203864	6204564	+	6203860	6204564	A5SS	ENSMUST00000029907.6	novel	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.07	1	14	1	14	n	0.00	0	11	0	11	n	0.00	0	17	0	17	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.29	2	5	2	5	y	0.00	0	6	0	6	n	0.00	0	2	0	2	n	ENSMUSG00000028243.6	Ubxn2b	chr4	protein_coding	UBX domain protein 2B
novel_NIR_13963	chr4	6204673	6206685	+	6204673	6208806	A3SS	ENSMUST00000029907.6	novel	0.00	0	14	0	14	n	0.00	0	4	0	4	n	0.15	2	11	2	11	y	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	ENSMUSG00000028243.6	Ubxn2b	chr4	protein_coding	UBX domain protein 2B
novel_NIR_13964	chr4	62418330	62419792	-	62418330	62421544	A5SS	ENSMUST00000140038.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000038422.3	Hdhd3	chr4	protein_coding	haloacid dehalogenase-like hydrolase domain containing 3
novel_NIR_13965	chr4	62432497	62442172	-	62432497	62438032	5pMXE	ENSMUST00000107444.8	novel	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.29	2	5	2	5	y	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	ENSMUSG00000028393.11	Alad	chr4	protein_coding	aminolevulinate, delta-, dehydratase
novel_NIR_13966	chr4	63133592	63139253	+	63132641	63139253	A5SS	ENSMUST00000125504.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045672.16	Col27a1	chr4	protein_coding	collagen, type XXVII, alpha 1
novel_NIR_13967	chr4	63133592	63139253	+	63134118	63139253	5pMXE	ENSMUST00000148751.2	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	16	0	16	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.50	2	2	2	2	y	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	ENSMUSG00000045672.16	Col27a1	chr4	protein_coding	collagen, type XXVII, alpha 1
novel_NIR_13968	chr4	63176425	63181956	+	63176433	63181956	A5SS	ENSMUST00000125504.8	novel	0.18	2	9	2	9	y	0.11	1	8	1	8	n	0.32	9	19	9	19	y	0.56	5	4	5	4	y	0.18	4	18	4	18	y	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.26	9	26	9	26	y	0.25	2	6	2	6	y	0.22	6	21	6	21	y	0.16	3	16	3	16	y	0.00	0	6	0	6	n	ENSMUSG00000045672.16	Col27a1	chr4	protein_coding	collagen, type XXVII, alpha 1
novel_NIR_13969	chr4	63199534;63200686	63200472;63200886	+	63199534	63200886	cassetteExon	ENSMUST00000125504.8	novel	0.25	3.0	9	2;4	9	y	0.00	0.0	8	0;0	8	n	0.07	2.5	33	4;1	33	n	0.00	0.0	17	0;0	17	n	0.00	0.0	39	0;0	39	n	0.00	0.0	21	0;0	21	n	0.00	0.0	25	0;0	25	n	0.00	0.0	30	0;0	30	n	0.11	1.5	12	2;1	12	n	0.08	2.0	23	1;3	23	n	0.00	0.0	15	0;0	15	n	0.00	0.0	4	0;0	4	n	ENSMUSG00000045672.16	Col27a1	chr4	protein_coding	collagen, type XXVII, alpha 1
novel_NIR_13970	chr4	63211498	63211707	+	63211491	63211707	A5SS	ENSMUST00000036300.13	novel	0.17	4	19	4	19	y	0.00	0	12	0	12	n	0.13	7	47	7	47	n	0.09	2	20	2	20	n	0.24	9	28	9	28	y	0.06	1	15	1	15	n	0.12	3	21	3	21	n	0.20	6	24	6	24	y	0.12	1	7	1	7	n	0.14	3	18	3	18	n	0.06	1	15	1	15	n	0.25	1	3	1	3	n	ENSMUSG00000045672.16	Col27a1	chr4	protein_coding	collagen, type XXVII, alpha 1
novel_NIR_13971	chr4	63230954	63231663	+	63227866	63231663	A5SS	ENSMUST00000036300.13	novel	0.16	3	16	3	16	y	0.00	0	27	0	27	n	0.00	0	66	0	66	n	0.00	0	25	0	25	n	0.00	0	47	0	47	n	0.00	0	26	0	26	n	0.00	0	28	0	28	n	0.02	1	45	1	45	n	0.00	0	19	0	19	n	0.06	2	33	2	33	n	0.00	0	14	0	14	n	0.00	0	14	0	14	n	ENSMUSG00000045672.16	Col27a1	chr4	protein_coding	collagen, type XXVII, alpha 1
novel_NIR_13972	chr4	63269523	63270113	+	63269523	63270110	A3SS	ENSMUST00000118337.2	novel	0.36	4	7	4	7	y	0.00	0	6	0	6	n	0.50	6	6	6	6	y	-	-	-	-	-	-	0.22	4	14	4	14	y	1.00	8	0	8	0	y	0.25	3	9	3	9	y	0.54	7	6	7	6	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000082141.2	Gm11212	chr4	unprocessed_pseudogene	predicted gene 11212
novel_NIR_13973	chr4	63269523	63270356	+	63269523;63270214	63270110;63270356	ES	ENSMUST00000118337.2	novel	0.29	2	5.0	2	7;3	y	0.00	0	6.0	0	6;6	n	0.34	5	9.5	5	6;13	y	0.00	0	0.5	0	0;1	n	0.00	0	9.5	0	14;5	n	0.53	5	4.5	5	0;9	y	0.10	1	9.5	1	9;10	n	0.41	6	8.5	6	6;11	y	0.00	0	0.5	0	0;1	n	0.00	0	1.0	0	1;1	n	0.00	0	1.5	0	0;3	n	0.00	0	1.5	0	1;2	n	ENSMUSG00000082141.2	Gm11212	chr4	unprocessed_pseudogene	predicted gene 11212
novel_NIR_13974	chr4	63270459	63271899	+	63270459	63272003	A3SS	ENSMUST00000118337.2	novel	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	17	0	17	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.21	4	15	4	15	y	0.00	0	15	0	15	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000082141.2	Gm11212	chr4	unprocessed_pseudogene	predicted gene 11212
novel_NIR_13975	chr4	63270459	63276130	+	63270459	63272003	3pMXE	ENSMUST00000118337.2	novel	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	17	0	17	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.35	8	15	8	15	y	0.00	0	15	0	15	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000082141.2	Gm11212	chr4	unprocessed_pseudogene	predicted gene 11212
novel_NIR_13976	chr4	63270459	63283922	+	63270459	63272003	3pMXE	ENSMUST00000118337.2	novel	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.00	0	17	0	17	n	0.00	0	4	0	4	n	0.40	6	9	6	9	y	0.00	0	13	0	13	n	0.12	2	15	2	15	n	0.00	0	15	0	15	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000082141.2	Gm11212	chr4	unprocessed_pseudogene	predicted gene 11212
novel_NIR_13977	chr4	63274550	63274704	+	63274550	63274808	A3SS	ENSMUST00000006687.5	novel	0.44	39	49	39	49	y	0.42	42	58	42	58	y	0.26	11	32	11	32	y	0.47	31	35	31	35	y	0.38	40	66	40	66	y	0.35	17	31	17	31	y	0.53	33	29	33	29	y	0.37	19	33	19	33	y	0.42	32	45	32	45	y	0.25	21	62	21	62	y	0.28	20	52	20	52	y	0.17	4	19	4	19	y	ENSMUSG00000028359.5	Orm3	chr4	protein_coding	orosomucoid 3
novel_NIR_13978	chr4	63274876	63275148	+	63274950	63275148	A5SS	ENSMUST00000006687.5	novel	0.37	25	42	25	42	y	0.50	52	52	52	52	y	0.03	1	36	1	36	n	0.36	32	56	32	56	y	0.35	29	55	29	55	y	0.36	12	21	12	21	y	0.49	31	32	31	32	y	0.38	23	38	23	38	y	0.39	31	48	31	48	y	0.29	19	47	19	47	y	0.23	25	82	25	82	y	0.21	9	34	9	34	y	ENSMUSG00000028359.5	Orm3	chr4	protein_coding	orosomucoid 3
novel_NIR_13979	chr4	63275213	63275781	+	63275218	63275781	A5SS	ENSMUST00000006687.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028359.5	Orm3	chr4	protein_coding	orosomucoid 3
novel_NIR_13980	chr4	63275224	63275781	+	63275218	63275781	A5SS	ENSMUST00000006687.5	novel	1.00	73	0	73	0	y	1.00	152	0	152	0	y	1.00	45	0	45	0	y	1.00	87	0	87	0	y	1.00	99	0	99	0	y	1.00	39	0	39	0	y	1.00	87	0	87	0	y	1.00	78	0	78	0	y	1.00	73	0	73	0	y	1.00	78	0	78	0	y	1.00	103	0	103	0	y	1.00	39	0	39	0	y	ENSMUSG00000028359.5	Orm3	chr4	protein_coding	orosomucoid 3
novel_NIR_13981	chr4	63276129	63282503	+	63276129	63277554	3pMXE	ENSMUST00000006687.5	novel	0.00	0	135	0	135	n	0.01	3	310	3	310	n	0.00	0	69	0	69	n	0.00	0	132	0	132	n	0.00	0	170	0	170	n	0.11	10	82	10	82	n	0.00	0	124	0	124	n	0.17	24	121	24	121	y	0.00	0	140	0	140	n	0.00	0	125	0	125	n	0.00	0	187	0	187	n	0.00	0	47	0	47	n	ENSMUSG00000028359.5	Orm3	chr4	protein_coding	orosomucoid 3
novel_NIR_13982	chr4	63477194	63478180	+	63477194	63479119	A3SS	ENSMUST00000126738.8	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.75	3	1	3	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000045917.18	Tmem268	chr4	protein_coding	transmembrane protein 268
novel_NIR_13983	chr4	63477194	63478180	+	63477194	63479149	A3SS	ENSMUST00000077709.11	novel	0.00	0	9	0	9	n	-	-	-	-	-	-	0.10	1	9	1	9	n	0.00	0	6	0	6	n	0.00	0	22	0	22	n	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.23	3	10	3	10	y	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	ENSMUSG00000045917.18	Tmem268	chr4	protein_coding	transmembrane protein 268
novel_NIR_13984	chr4	63478642	63478744	+	63478642	63479119	A3SS	ENSMUST00000124332.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.82	18	4	18	4	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.50	3	3	3	3	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000045917.18	Tmem268	chr4	protein_coding	transmembrane protein 268
novel_NIR_13985	chr4	63478642	63478744	+	63478642	63479149	A3SS	ENSMUST00000150360.8	novel	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.51	18	17	18	17	n	-	-	-	-	-	-	0.20	1	4	1	4	n	0.13	3	20	3	20	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000045917.18	Tmem268	chr4	protein_coding	transmembrane protein 268
novel_NIR_13986	chr4	63478642;63478896	63478744;63479119	+	63478642	63479119	cassetteExon	ENSMUST00000124332.8	novel	-	-	-	-	-	-	1.00	1.0	0	2;0	0	n	0.73	11.0	4	18;4	4	y	-	-	-	-	-	-	0.33	0.5	1	1;0	1	n	0.40	2.0	3	3;1	3	n	0.00	0.0	3	0;0	3	n	0.33	0.5	1	1;0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	0.5	1	1;0	1	n	ENSMUSG00000045917.18	Tmem268	chr4	protein_coding	transmembrane protein 268
novel_NIR_13987	chr4	63478642;63478962	63478744;63479149	+	63478642	63479149	cassetteExon	ENSMUST00000150360.8	novel	0.00	0.0	2	0;0	2	n	0.50	1.0	1	2;0	1	n	0.39	11.0	17	18;4	17	y	-	-	-	-	-	-	0.11	0.5	4	1;0	4	n	0.07	1.5	20	3;0	20	n	0.33	1.0	2	0;2	2	n	0.20	1.0	4	1;1	4	n	-	-	-	-	-	-	0.00	0.0	1	0;0	1	n	-	-	-	-	-	-	1.00	1.0	0	1;1	0	n	ENSMUSG00000045917.18	Tmem268	chr4	protein_coding	transmembrane protein 268
novel_NIR_13988	chr4	63478896	63479119	+	63477194	63479119	A5SS	ENSMUST00000126738.8	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.50	4	4	4	4	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000045917.18	Tmem268	chr4	protein_coding	transmembrane protein 268
novel_NIR_13989	chr4	63478896	63479149	+	63477194	63479149	A5SS	ENSMUST00000077709.11	novel	0.00	0	9	0	9	n	-	-	-	-	-	-	0.10	1	9	1	9	n	0.00	0	6	0	6	n	0.04	1	22	1	22	n	0.16	3	16	3	16	y	0.00	0	11	0	11	n	0.29	4	10	4	10	n	0.14	1	6	1	6	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	ENSMUSG00000045917.18	Tmem268	chr4	protein_coding	transmembrane protein 268
novel_NIR_13990	chr4	63478962	63479149	+	63477194	63479149	A5SS	ENSMUST00000077709.11	novel	0.00	0	9	0	9	n	-	-	-	-	-	-	0.31	4	9	4	9	y	0.00	0	6	0	6	n	0.00	0	22	0	22	n	0.00	0	16	0	16	n	0.15	2	11	2	11	y	0.09	1	10	1	10	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.07	1	13	1	13	n	ENSMUSG00000045917.18	Tmem268	chr4	protein_coding	transmembrane protein 268
novel_NIR_13991	chr4	63478962	63479149	+	63478642	63479149	A5SS	ENSMUST00000150360.8	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.19	4	17	4	17	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	20	0	20	n	0.50	2	2	2	2	y	0.20	1	4	1	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000045917.18	Tmem268	chr4	protein_coding	transmembrane protein 268
novel_NIR_13992	chr4	6386708	6393012	+	6386708	6407264	A3SS	ENSMUST00000108374.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000028249.16	Sdcbp	chr4	protein_coding	syndecan binding protein
novel_NIR_13993	chr4	6787577	6822905	-	6741567	6822905	A3SS	ENSMUST00000039987.4	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.33	3	6	3	6	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	ENSMUSG00000041272.12	Tox	chr4	protein_coding	thymocyte selection-associated high mobility group box
novel_NIR_13994	chr4	6990525	6990757	-	6990525	6991382	A5SS	ENSMUST00000147657.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000041272.12	Tox	chr4	protein_coding	thymocyte selection-associated high mobility group box
novel_NIR_13995	chr4	70199765	70208082	-	70199759	70208082	A3SS	ENSMUST00000144099.8	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.14	1	6	1	6	n	1.00	3	0	3	0	y	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	ENSMUSG00000039298.17	Cdk5rap2	chr4	protein_coding	CDK5 regulatory subunit associated protein 2
novel_NIR_13996	chr4	72076654	72079305	-	72076654	72087329	A5SS	ENSMUST00000030095.11	novel	0.00	0	4	0	4	n	0.17	2	10	2	10	y	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.00	0	4	0	4	n	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.00	0	23	0	23	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	ENSMUSG00000008305.19	Tle1	chr4	protein_coding	transducin-like enhancer of split 1
novel_NIR_13997	chr4	72076654	72087392	-	72076654	72087329	A5SS	ENSMUST00000030095.11	novel	0.00	0	4	0	4	n	0.09	1	10	1	10	n	0.23	3	10	3	10	y	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.00	0	4	0	4	n	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.00	0	23	0	23	n	0.00	0	11	0	11	n	0.07	1	14	1	14	n	ENSMUSG00000008305.19	Tle1	chr4	protein_coding	transducin-like enhancer of split 1
novel_NIR_13998	chr4	76108027	76161882	-	76058939	76161882	A3SS	ENSMUST00000107289.9	novel	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.00	0	24	0	24	n	0.00	0	30	0	30	n	0.03	1	34	1	34	n	0.00	0	8	0	8	n	0.00	0	27	0	27	n	0.04	1	22	1	22	n	0.00	0	9	0	9	n	0.00	0	27	0	27	n	0.17	3	15	3	15	y	0.06	1	17	1	17	n	ENSMUSG00000028399.19	Ptprd	chr4	protein_coding	protein tyrosine phosphatase, receptor type, D
novel_NIR_13999	chr4	76243582	76262223	-	76243582	76262403	A5SS	ENSMUST00000050757.16	novel	0.40	2	3	2	3	y	-	-	-	-	-	-	0.38	3	5	3	5	y	0.00	0	6	0	6	n	0.69	9	4	9	4	y	0.33	2	4	2	4	y	0.64	7	4	7	4	y	0.56	5	4	5	4	y	0.78	7	2	7	2	y	0.40	6	9	6	9	y	0.55	6	5	6	5	y	0.22	4	14	4	14	y	ENSMUSG00000028399.19	Ptprd	chr4	protein_coding	protein tyrosine phosphatase, receptor type, D
novel_NIR_14000	chr4	76243582	76262223	-	76243582	76367880	A5SS	ENSMUST00000107289.9	novel	0.40	2	3	2	3	y	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	5	0	5	n	0.60	9	6	9	6	y	0.40	2	3	2	3	y	0.54	7	6	7	6	y	0.71	5	2	5	2	y	1.00	7	0	7	0	y	0.43	6	8	6	8	y	0.86	6	1	6	1	y	0.44	4	5	4	5	y	ENSMUSG00000028399.19	Ptprd	chr4	protein_coding	protein tyrosine phosphatase, receptor type, D
novel_NIR_14001	chr4	76243582	76262223	-	76243582	76512504	A5SS	ENSMUST00000173376.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	1.00	9	0	9	0	y	1.00	2	0	2	0	y	1.00	7	0	7	0	y	0.71	5	2	5	2	y	1.00	7	0	7	0	y	1.00	6	0	6	0	y	1.00	6	0	6	0	y	1.00	4	0	4	0	y	ENSMUSG00000028399.19	Ptprd	chr4	protein_coding	protein tyrosine phosphatase, receptor type, D
novel_NIR_14002	chr4	81221910	81225034	-	81221910	81225037	A5SS	ENSMUST00000107262.8	novel	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	20	0	20	n	0.04	1	27	1	27	n	0.00	0	32	0	32	n	0.40	2	3	2	3	y	0.00	0	29	0	29	n	0.00	0	15	0	15	n	0.00	0	19	0	19	n	0.03	1	33	1	33	n	0.00	0	17	0	17	n	0.03	1	30	1	30	n	ENSMUSG00000028402.19	Mpdz	chr4	protein_coding	multiple PDZ domain crumbs cell polarity complex component
novel_NIR_14003	chr4	81266927	81267239	-	81266981	81267239	A3SS	ENSMUST00000107262.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.57	4	3	4	3	y	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000028402.19	Mpdz	chr4	protein_coding	multiple PDZ domain crumbs cell polarity complex component
novel_NIR_14004	chr4	83165955	83174282	-	83165955;83171287	83171223;83174282	ES	ENSMUST00000102823.10	novel	0.00	0	11.5	0	13;10	n	0.15	2	11.0	2	12;10	y	0.00	0	47.0	0	53;41	n	0.04	1	27.0	1	36;18	n	0.05	1	19.5	1	18;21	n	0.00	0	17.0	0	18;16	n	0.05	1	17.5	1	23;12	n	0.00	0	20.0	0	21;19	n	0.00	0	21.0	0	20;22	n	0.06	2	30.0	2	29;31	n	0.00	0	15.5	0	16;15	n	0.00	0	21.0	0	22;20	n	ENSMUSG00000038172.15	Ttc39b	chr4	protein_coding	tetratricopeptide repeat domain 39B
novel_NIR_14005	chr4	83165955	83174282	-	83171287	83174282	3pMXE	ENSMUST00000150522.8	novel	0.00	0	10	0	10	n	0.17	2	10	2	10	y	0.00	0	41	0	41	n	0.05	1	18	1	18	n	0.05	1	21	1	21	n	0.00	0	16	0	16	n	0.08	1	12	1	12	n	0.00	0	19	0	19	n	0.00	0	22	0	22	n	0.06	2	31	2	31	n	0.00	0	15	0	15	n	0.00	0	20	0	20	n	ENSMUSG00000038172.15	Ttc39b	chr4	protein_coding	tetratricopeptide repeat domain 39B
novel_NIR_14006	chr4	83177729	83179119	-	83177703	83179119	A3SS	ENSMUST00000030205.14	novel	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	19	0	19	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.18	2	9	2	9	y	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	ENSMUSG00000038172.15	Ttc39b	chr4	protein_coding	tetratricopeptide repeat domain 39B
novel_NIR_14007	chr4	83354710	83355824	+	83354710	83360124	A3SS	ENSMUST00000030206.10	novel	0.12	1	7	1	7	n	0.15	2	11	2	11	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.21	4	15	4	15	n	0.17	1	5	1	5	n	0.27	3	8	3	8	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.33	3	6	3	6	y	0.08	1	12	1	12	n	0.14	3	18	3	18	n	ENSMUSG00000028483.14	Snapc3	chr4	protein_coding	small nuclear RNA activating complex, polypeptide 3
novel_NIR_14008	chr4	83354710;83355960	83355824;83360124	+	83354710	83360124	cassetteExon	ENSMUST00000030206.10	novel	0.18	1.5	7	1;2	7	n	0.12	1.5	11	2;1	11	n	0.00	0.0	8	0;0	8	n	0.11	0.5	4	0;1	4	n	0.21	4.0	15	4;4	15	y	0.09	0.5	5	1;0	5	n	0.24	2.5	8	3;2	8	y	0.00	0.0	3	0;0	3	n	0.00	0.0	11	0;0	11	n	0.20	1.5	6	3;0	6	n	0.14	2.0	12	1;3	12	n	0.08	1.5	18	3;0	18	n	ENSMUSG00000028483.14	Snapc3	chr4	protein_coding	small nuclear RNA activating complex, polypeptide 3
novel_NIR_14009	chr4	83360206	83368435	+	83360206	83368308	A3SS	ENSMUST00000030206.10	novel	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.50	2	2	2	2	y	0.00	0	8	0	8	n	0.00	0	15	0	15	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.10	1	9	1	9	n	0.00	0	5	0	5	n	0.18	2	9	2	9	y	ENSMUSG00000028483.14	Snapc3	chr4	protein_coding	small nuclear RNA activating complex, polypeptide 3
novel_NIR_14010	chr4	83360206	83369442	+	83360206;83368472	83368308;83369442	ES	ENSMUST00000030206.10	novel	0.00	0	5.0	0	3;7	n	0.10	1	9.5	1	7;12	n	0.00	0	7.5	0	2;13	n	0.00	0	8.5	0	8;9	n	0.00	0	14.0	0	15;13	n	0.00	0	5.5	0	4;7	n	0.00	0	9.0	0	5;13	n	0.00	0	4.5	0	3;6	n	0.00	0	6.0	0	6;6	n	0.00	0	8.0	0	9;7	n	0.15	2	11.0	2	5;17	y	0.00	0	12.0	0	9;15	n	ENSMUSG00000028483.14	Snapc3	chr4	protein_coding	small nuclear RNA activating complex, polypeptide 3
novel_NIR_14011	chr4	83380656	83381832	-	83380411	83381832	A3SS	ENSMUST00000126706.8	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028484.17	Psip1	chr4	protein_coding	PC4 and SFRS1 interacting protein 1
novel_NIR_14012	chr4	83380656	83381832	-	83380710	83381832	A3SS	ENSMUST00000107215.9	novel	0.38	3	5	3	5	y	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.30	3	7	3	7	y	0.00	0	8	0	8	n	0.00	0	9	0	9	n	ENSMUSG00000028484.17	Psip1	chr4	protein_coding	PC4 and SFRS1 interacting protein 1
novel_NIR_14013	chr4	83380656	83381832	-	83380790	83381832	A3SS	ENSMUST00000107214.9	novel	0.17	3	15	3	15	y	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.11	1	8	1	8	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.27	3	8	3	8	y	0.00	0	5	0	5	n	0.00	0	13	0	13	n	ENSMUSG00000028484.17	Psip1	chr4	protein_coding	PC4 and SFRS1 interacting protein 1
novel_NIR_14014	chr4	83381143	83381832	-	83380411	83381832	A3SS	ENSMUST00000126706.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028484.17	Psip1	chr4	protein_coding	PC4 and SFRS1 interacting protein 1
novel_NIR_14015	chr4	83381143	83381832	-	83380710	83381832	A3SS	ENSMUST00000107215.9	novel	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.43	3	4	3	4	y	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	ENSMUSG00000028484.17	Psip1	chr4	protein_coding	PC4 and SFRS1 interacting protein 1
novel_NIR_14016	chr4	83381143	83381832	-	83380790	83381832	A3SS	ENSMUST00000107214.9	novel	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.30	3	7	3	7	y	0.00	0	2	0	2	n	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	ENSMUSG00000028484.17	Psip1	chr4	protein_coding	PC4 and SFRS1 interacting protein 1
novel_NIR_14017	chr4	83476267	83519845	+	83476267	83476766	3pMXE	ENSMUST00000107202.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000052407.18	Ccdc171	chr4	protein_coding	coiled-coil domain containing 171
novel_NIR_14018	chr4	83476267	83519845	+	83476267;83499131	83498985;83519845	ES	ENSMUST00000053414.13	novel	0.00	0	0.5	0	0;1	n	0.00	0	0.5	0	0;1	n	0.00	0	1.5	0	1;2	n	0.00	0	0.5	0	0;1	n	0.80	2	0.5	2	1;0	y	-	-	-	-	-	-	0.00	0	1.0	0	0;2	n	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000052407.18	Ccdc171	chr4	protein_coding	coiled-coil domain containing 171
novel_NIR_14019	chr4	83548044	83553877	+	83522419	83553877	A5SS	ENSMUST00000125077.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000052407.18	Ccdc171	chr4	protein_coding	coiled-coil domain containing 171
novel_NIR_14020	chr4	83548044	83553877	+	83539200	83553877	A5SS	ENSMUST00000053414.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000052407.18	Ccdc171	chr4	protein_coding	coiled-coil domain containing 171
novel_NIR_14021	chr4	83552583	83553877	+	83522419	83553877	A5SS	ENSMUST00000125077.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000052407.18	Ccdc171	chr4	protein_coding	coiled-coil domain containing 171
novel_NIR_14022	chr4	83552583	83553877	+	83539200	83553877	A5SS	ENSMUST00000053414.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000052407.18	Ccdc171	chr4	protein_coding	coiled-coil domain containing 171
novel_NIR_14023	chr4	84044676	84049525	-	84044676	84048123	5pMXE	ENSMUST00000150794.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000087378.2	Gm12414	chr4	lncRNA	predicted gene 12414
novel_NIR_14024	chr4	84914817	84917540	+	84914817	84923160	A3SS	ENSMUST00000047023.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000038070.16	Cntln	chr4	protein_coding	centlein, centrosomal protein
novel_NIR_14025	chr4	86501951	86503565	-	86502110	86503565	A3SS	ENSMUST00000070607.9	novel	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.50	3	3	3	3	y	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	4	0	4	n	0.50	1	1	1	1	n	0.50	4	4	4	4	y	0.33	2	4	2	4	y	0.00	0	5	0	5	n	ENSMUSG00000038047.19	Haus6	chr4	protein_coding	HAUS augmin-like complex, subunit 6
novel_NIR_14026	chr4	86582748	86586556	-	86582748	86583924	5pMXE	ENSMUST00000147097.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028494.13	Plin2	chr4	protein_coding	perilipin 2
novel_NIR_14027	chr4	86586942	86587083	-	86586942	86587683	A5SS	ENSMUST00000149700.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	4	0	4	0	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000028494.13	Plin2	chr4	protein_coding	perilipin 2
novel_NIR_14028	chr4	86586942	86587083	-	86586942	86587938	A5SS	ENSMUST00000140382.3	novel	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	25	0	25	n	0.00	0	3	0	3	n	0.50	4	4	4	4	y	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	8	0	8	n	ENSMUSG00000028494.13	Plin2	chr4	protein_coding	perilipin 2
novel_NIR_14029	chr4	86586942	86588108	-	86586942	86587683	5pMXE	ENSMUST00000149700.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.25	1	3	1	3	n	0.33	1	2	1	2	n	0.50	1	1	1	1	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000028494.13	Plin2	chr4	protein_coding	perilipin 2
novel_NIR_14030	chr4	86586942	86588108	-	86586942	86587938	5pMXE	ENSMUST00000140382.3	novel	-	-	-	-	-	-	0.00	0	7	0	7	n	0.17	5	25	5	25	y	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.25	1	3	1	3	n	0.12	1	7	1	7	n	0.17	1	5	1	5	n	0.12	1	7	1	7	n	0.20	2	8	2	8	y	-	-	-	-	-	-	0.00	0	8	0	8	n	ENSMUSG00000028494.13	Plin2	chr4	protein_coding	perilipin 2
novel_NIR_14031	chr4	86667203	86692475	+	86667149	86692475	A5SS	ENSMUST00000045512.15	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.14	1	6	1	6	n	0.00	0	8	0	8	n	0.00	0	18	0	18	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.14	1	6	1	6	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.20	2	8	2	8	y	ENSMUSG00000038024.18	Dennd4c	chr4	protein_coding	DENN/MADD domain containing 4C
novel_NIR_14032	chr4	86829944	86835631	+	86829990	86835631	A5SS	ENSMUST00000045224.14	novel	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.05	1	19	1	19	n	0.06	1	15	1	15	n	0.06	1	15	1	15	n	0.26	5	14	5	14	y	0.11	2	16	2	16	n	0.14	1	6	1	6	n	0.40	2	3	2	3	y	0.50	5	5	5	5	y	1.00	1	0	1	0	n	0.29	2	5	2	5	y	ENSMUSG00000038007.15	Acer2	chr4	protein_coding	alkaline ceramidase 2
novel_NIR_14033	chr4	88315472	88319254	+	88318802	88319254	5pMXE	ENSMUST00000162039.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038368.17	Focad	chr4	protein_coding	focadhesin
novel_NIR_14034	chr4	88315472	88319254	+	88318979	88319254	5pMXE	ENSMUST00000107147.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038368.17	Focad	chr4	protein_coding	focadhesin
novel_NIR_14035	chr4	8832618	8833912	+	8832618	8833740	A3SS	ENSMUST00000039267.10	novel	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	19	0	19	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.33	3	6	3	6	y	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	ENSMUSG00000041235.13	Chd7	chr4	protein_coding	chromodomain helicase DNA binding protein 7
novel_NIR_14036	chr4	8847616	8849124	+	8847616	8850796	A3SS	ENSMUST00000039267.10	novel	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.15	2	11	2	11	y	0.00	0	9	0	9	n	0.00	0	10	0	10	n	ENSMUSG00000041235.13	Chd7	chr4	protein_coding	chromodomain helicase DNA binding protein 7
novel_NIR_14037	chr4	8849263	8850796	+	8847616	8850796	A5SS	ENSMUST00000039267.10	novel	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.15	2	11	2	11	y	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	ENSMUSG00000041235.13	Chd7	chr4	protein_coding	chromodomain helicase DNA binding protein 7
novel_NIR_14038	chr4	94349592	94350123	-	94349592	94352667	A5SS	ENSMUST00000133884.8	novel	1.00	1	0	1	0	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.57	4	3	4	3	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.33	3	6	3	6	y	ENSMUSG00000087128.8	Gm12655	chr4	lncRNA	predicted gene 12655
novel_NIR_14039	chr4	94356102	94409299	-	94356102	94365250	5pMXE	ENSMUST00000133884.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000087128.8	Gm12655	chr4	lncRNA	predicted gene 12655
novel_NIR_14040	chr4	94503177	94506204	+	94502888	94506204	A5SS	ENSMUST00000107104.3	novel	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	ENSMUSG00000028576.13	Ift74	chr4	protein_coding	intraflagellar transport 74
novel_NIR_14041	chr4	94611536	94669053	+	94627929	94669053	5pMXE	ENSMUST00000073939.13	novel	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000006386.16	Tek	chr4	protein_coding	TEK receptor tyrosine kinase
novel_NIR_14042	chr4	9484600	9508627	-	9484607	9508627	A3SS	ENSMUST00000078139.13	novel	0.00	0	21	0	21	n	0.00	0	16	0	16	n	0.00	0	48	0	48	n	0.00	0	27	0	27	n	0.00	0	46	0	46	n	0.00	0	24	0	24	n	0.00	0	26	0	26	n	0.03	1	32	1	32	n	0.00	0	15	0	15	n	0.15	3	17	3	17	y	0.00	0	15	0	15	n	0.00	0	18	0	18	n	ENSMUSG00000028207.19	Asph	chr4	protein_coding	aspartate-beta-hydroxylase
novel_NIR_14043	chr4	94941633	94950824	+	94940002	94950824	A5SS	ENSMUST00000142292.8	novel	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	5	0	5	0	y	ENSMUSG00000087366.8	Junos	chr4	lncRNA	jun proto-oncogene, opposite strand
novel_NIR_14044	chr4	94941633	94950824	+	94941633	94948782	3pMXE	ENSMUST00000125917.2	novel	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	5	0	5	0	y	ENSMUSG00000087366.8	Junos	chr4	lncRNA	jun proto-oncogene, opposite strand
novel_NIR_14045	chr4	94941633	94950824	+	94941633	94953850	A3SS	ENSMUST00000124166.8	novel	0.25	1	3	1	3	n	1.00	4	0	4	0	y	0.71	5	2	5	2	y	0.29	2	5	2	5	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	5	0	5	0	y	ENSMUSG00000087366.8	Junos	chr4	lncRNA	jun proto-oncogene, opposite strand
novel_NIR_14046	chr4	94953991	94955411	+	94953981	94955411	A5SS	ENSMUST00000142292.8	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	0.08	1	11	1	11	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.25	1	3	1	3	n	0.50	3	3	3	3	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	ENSMUSG00000087366.8	Junos	chr4	lncRNA	jun proto-oncogene, opposite strand
novel_NIR_14047	chr4	95445828	95454055	+	95445828	95446113	A3SS&ES	ENSMUST00000177394.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
novel_NIR_14048	chr4	95445828	95454055	+	95445828	95485860	A3SS	ENSMUST00000141248.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
novel_NIR_14049	chr4	95467188	95473469	+	95445828	95473469	A5SS	ENSMUST00000079223.11	novel	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.21	3	11	3	11	y	0.00	0	12	0	12	n	0.00	0	20	0	20	n	0.00	0	4	0	4	n	0.05	1	21	1	21	n	0.00	0	12	0	12	n	0.07	1	14	1	14	n	0.00	0	19	0	19	n	0.00	0	26	0	26	n	0.00	0	19	0	19	n	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
novel_NIR_14050	chr4	95467791	95469854	+	95467791	95473473	A3SS	ENSMUST00000150830.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
novel_NIR_14051	chr4	95467791	95470005	+	95467791	95473473	A3SS	ENSMUST00000150830.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
novel_NIR_14052	chr4	95467791	95485860	+	95445828	95485860	A5SS	ENSMUST00000141248.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
novel_NIR_14053	chr4	95467791	95485860	+	95475405	95485860	5pMXE	ENSMUST00000176840.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
novel_NIR_14054	chr4	95469880	95473473	+	95446270	95473473	A5SS	ENSMUST00000177394.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
novel_NIR_14055	chr4	95470067	95473469	+	95445828	95473469	A5SS	ENSMUST00000079223.11	novel	0.20	2	8	2	8	y	0.12	1	7	1	7	n	0.21	3	11	3	11	y	0.08	1	12	1	12	n	0.13	3	20	3	20	n	0.00	0	4	0	4	n	0.00	0	21	0	21	n	0.00	0	12	0	12	n	0.07	1	14	1	14	n	0.00	0	19	0	19	n	0.00	0	26	0	26	n	0.17	4	19	4	19	y	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
novel_NIR_14056	chr4	95489353	95505667	+	95489353	95585197	A3SS	ENSMUST00000141248.8	novel	0.25	1	3	1	3	n	0.12	1	7	1	7	n	0.33	1	2	1	2	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.20	2	8	2	8	y	0.10	1	9	1	9	n	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
novel_NIR_14057	chr4	95489353	95505688	+	95489353	95585197	A3SS	ENSMUST00000141248.8	novel	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.25	2	6	2	6	y	-	-	-	-	-	-	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.00	0	8	0	8	n	0.18	2	9	2	9	y	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
novel_NIR_14058	chr4	95585312	95620654	+	95585312	95620498	A3SS	ENSMUST00000143742.3	novel	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
novel_NIR_14059	chr4	95657766	95700345	+	95657766	95725822	A3SS	ENSMUST00000147766.8	novel	0.46	6	7	6	7	y	0.50	5	5	5	5	n	-	-	-	-	-	-	0.50	7	7	7	7	y	0.46	6	7	6	7	y	0.25	1	3	1	3	n	0.12	2	14	2	14	n	-	-	-	-	-	-	0.21	4	15	4	15	y	0.50	13	13	13	13	y	0.42	5	7	5	7	n	0.44	8	10	8	10	n	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
novel_NIR_14060	chr4	95688901	95725822	+	95657766	95725822	A5SS	ENSMUST00000147766.8	novel	0.00	0	7	0	7	n	0.17	1	5	1	5	n	-	-	-	-	-	-	0.30	3	7	3	7	y	0.22	2	7	2	7	y	0.00	0	3	0	3	n	0.07	1	14	1	14	n	1.00	3	0	3	0	y	0.12	2	15	2	15	n	0.19	3	13	3	13	y	0.22	2	7	2	7	y	0.29	4	10	4	10	y	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
novel_NIR_14061	chr4	95700406	95725822	+	95700406	95709119	3pMXE	ENSMUST00000043335.11	novel	0.00	0	53	0	53	n	0.03	1	36	1	36	n	0.04	1	23	1	23	n	0.00	0	53	0	53	n	0.00	0	61	0	61	n	0.18	3	14	3	14	y	0.02	1	43	1	43	n	0.05	1	20	1	20	n	0.00	0	46	0	46	n	0.00	0	75	0	75	n	0.02	1	51	1	51	n	0.01	1	66	1	66	n	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
novel_NIR_14062	chr4	95716335	95725822	+	95657766	95725822	A5SS	ENSMUST00000147766.8	novel	0.12	1	7	1	7	n	0.38	3	5	3	5	y	-	-	-	-	-	-	0.00	0	7	0	7	n	0.36	4	7	4	7	y	0.00	0	3	0	3	n	0.18	3	14	3	14	y	1.00	4	0	4	0	y	0.21	4	15	4	15	y	0.41	9	13	9	13	y	0.12	1	7	1	7	n	0.33	5	10	5	10	y	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
novel_NIR_14063	chr4	95725896	95731558	+	95725896	95727247	3pMXE	ENSMUST00000176162.8	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.20	1	4	1	4	n	0.00	0	4	0	4	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	1.00	3	0	3	0	y	0.40	4	6	4	6	y	0.00	0	6	0	6	n	0.67	2	1	2	1	y	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
novel_NIR_14064	chr4	95725896	95731558	+	95725896	95737819	A3SS	ENSMUST00000130541.8	novel	0.11	2	17	2	17	n	0.06	1	16	1	16	n	0.33	1	2	1	2	n	0.06	1	17	1	17	n	0.00	0	11	0	11	n	0.25	1	3	1	3	n	0.05	1	18	1	18	n	0.00	0	1	0	1	n	0.16	3	16	3	16	y	0.14	4	24	4	24	n	0.00	0	12	0	12	n	0.15	2	11	2	11	y	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
novel_NIR_14065	chr4	95725896	95811162	+	95725896	95727247	3pMXE	ENSMUST00000176162.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	2	4	2	4	y	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.25	1	3	1	3	n	1.00	2	0	2	0	y	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
novel_NIR_14066	chr4	95735395	95737819	+	95725896	95737819	A5SS	ENSMUST00000130541.8	novel	0.00	0	17	0	17	n	0.06	1	16	1	16	n	0.00	0	2	0	2	n	0.00	0	17	0	17	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.14	3	18	3	18	n	0.00	0	1	0	1	n	0.00	0	16	0	16	n	0.00	0	24	0	24	n	0.08	1	12	1	12	n	0.21	3	11	3	11	y	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
novel_NIR_14067	chr4	95737913	95749474	+	95737913	95765199	A3SS	ENSMUST00000147766.8	novel	1.00	1	0	1	0	n	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	9	0	9	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.78	7	2	7	2	y	0.89	8	1	8	1	y	1.00	2	0	2	0	y	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
novel_NIR_14068	chr4	95737913	95749474	+	95737913	95790216	A3SS	ENSMUST00000142384.2	novel	0.33	1	2	1	2	n	0.83	5	1	5	1	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.90	9	1	9	1	y	0.50	1	1	1	1	n	0.25	1	3	1	3	n	0.58	7	5	7	5	n	0.80	8	2	8	2	n	0.50	2	2	2	2	y	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
novel_NIR_14069	chr4	95737913	95759285	+	95737913	95765199	A3SS	ENSMUST00000147766.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.50	2	2	2	2	y	0.67	2	1	2	1	y	1.00	4	0	4	0	y	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
novel_NIR_14070	chr4	95737913	95759285	+	95737913	95790216	A3SS	ENSMUST00000142384.2	novel	0.00	0	2	0	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.17	1	5	1	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	3	3	3	3	y	0.29	2	5	2	5	y	0.50	2	2	2	2	y	0.67	4	2	4	2	y	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
novel_NIR_14071	chr4	95737913	95765203	+	95737913	95765199	A3SS	ENSMUST00000147766.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
novel_NIR_14072	chr4	95737913	95765203	+	95737913	95790216	A3SS	ENSMUST00000142384.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.17	1	5	1	5	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
novel_NIR_14073	chr4	95737913	95782661	+	95737913	95765199	3pMXE	ENSMUST00000147766.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	6	0	6	0	y	0.83	5	1	5	1	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.60	3	2	3	2	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
novel_NIR_14074	chr4	95737913	95782661	+	95737913	95790216	A3SS	ENSMUST00000142384.2	novel	0.00	0	2	0	2	n	0.67	2	1	2	1	y	1.00	3	0	3	0	y	0.55	6	5	6	5	y	0.83	5	1	5	1	y	-	-	-	-	-	-	0.67	2	1	2	1	y	0.50	1	1	1	1	n	0.40	2	3	2	3	y	0.38	3	5	3	5	y	0.00	0	2	0	2	n	0.33	1	2	1	2	n	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
novel_NIR_14075	chr4	95737913	95799933	+	95737913	95765199	3pMXE	ENSMUST00000147766.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
novel_NIR_14076	chr4	95737913	95799933	+	95737913	95790216	A3SS&ES	ENSMUST00000142384.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.50	2	2	2	2	n	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
novel_NIR_14077	chr4	95737913	95804042	+	95737913	95765199	3pMXE	ENSMUST00000147766.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	0.67	2	1	2	1	y	-	-	-	-	-	-	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
novel_NIR_14078	chr4	95737913	95804042	+	95737913	95790216	A3SS&ES	ENSMUST00000142384.2	novel	0.00	0	2	0	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.29	2	5	2	5	y	0.50	2	2	2	2	y	0.00	0	2	0	2	n	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
novel_NIR_14079	chr4	95737913	95814960	+	95737913	95765199	3pMXE	ENSMUST00000147766.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	-	-	-	-	-	-	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
novel_NIR_14080	chr4	95737913;95749649	95749474;95811162	+	95737913;95790293	95790216;95811162	MXE	ENSMUST00000142384.2	novel	0.36	2.5	4.5	1;4	2;7	n	0.80	4.0	1.0	5;3	1;1	y	1.00	1.0	0.0	0;2	0;0	n	0.11	0.5	4.0	0;1	5;3	n	0.12	0.5	3.5	0;1	1;6	n	-	-	-	-	-	-	0.82	4.5	1.0	9;0	1;1	n	0.17	0.5	2.5	1;0	1;4	n	0.33	1.5	3.0	1;2	3;3	n	0.47	4.0	4.5	7;1	5;4	n	0.62	5.0	3.0	8;2	2;4	y	0.33	1.0	2.0	2;0	2;2	n	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
novel_NIR_14081	chr4	95737913;95800029	95799933;95811162	+	95737913;95790293	95790216;95811162	MXE	ENSMUST00000142384.2	novel	0.00	0.0	4.5	0;0	2;7	n	0.00	0.0	1.0	0;0	1;1	n	-	-	-	-	-	-	0.00	0.0	4.0	0;0	5;3	n	0.22	1.0	3.5	2;0	1;6	n	-	-	-	-	-	-	0.00	0.0	1.0	0;0	1;1	n	0.00	0.0	2.5	0;0	1;4	n	0.00	0.0	3.0	0;0	3;3	n	0.18	1.0	4.5	1;1	5;4	n	0.00	0.0	3.0	0;0	2;4	n	0.56	2.5	2.0	2;3	2;2	y	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
novel_NIR_14082	chr4	95749649	95811162	+	95732430	95811162	A5SS	ENSMUST00000156223.2	novel	0.80	4	1	4	1	y	1.00	3	0	3	0	y	0.67	2	1	2	1	y	0.50	1	1	1	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.50	2	2	2	2	y	-	-	-	-	-	-	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
novel_NIR_14083	chr4	95749649	95811162	+	95790293	95811162	A5SS&ES	ENSMUST00000142384.2	novel	0.36	4	7	4	7	n	0.75	3	1	3	1	n	1.00	2	0	2	0	y	0.25	1	3	1	3	n	0.14	1	6	1	6	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.40	2	3	2	3	n	0.20	1	4	1	4	n	0.33	2	4	2	4	n	0.00	0	2	0	2	n	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
novel_NIR_14084	chr4	95765284	95811162	+	95732430	95811162	A5SS	ENSMUST00000156223.2	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.75	3	1	3	1	y	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.33	1	2	1	2	n	1.00	2	0	2	0	y	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
novel_NIR_14085	chr4	95765284	95811162	+	95790293	95811162	A5SS&ES	ENSMUST00000142384.2	novel	0.00	0	7	0	7	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.50	3	3	3	3	n	0.14	1	6	1	6	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.33	2	4	2	4	y	0.20	1	4	1	4	n	0.50	2	2	2	2	y	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
novel_NIR_14086	chr4	95800029	95811162	+	95732430	95811162	A5SS	ENSMUST00000156223.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
novel_NIR_14087	chr4	96457139;96457762	96457704;96460172	-	96457139	96460172	cassetteExon	ENSMUST00000055693.9	novel	0.18	6.5	29	3;10	29	y	0.07	2.0	25	1;3	25	n	0.05	1.0	20	2;0	20	n	0.02	0.5	21	0;1	21	n	0.13	5.5	37	5;6	37	n	0.00	0.0	10	0;0	10	n	0.10	4.0	36	4;4	36	n	0.00	0.0	9	0;0	9	n	0.15	3.0	17	1;5	17	n	0.08	3.0	35	3;3	35	n	0.14	4.5	27	6;3	27	n	0.20	7.0	28	6;8	28	y	ENSMUSG00000015224.11	Cyp2j9	chr4	protein_coding	cytochrome P450, family 2, subfamily j, polypeptide 9
novel_NIR_14088	chr4	96462276	96465731	-	96462276	96465829	A5SS	ENSMUST00000055693.9	novel	0.14	3	19	3	19	n	0.12	3	22	3	22	n	0.00	0	21	0	21	n	0.15	4	23	4	23	y	0.04	1	27	1	27	n	0.00	0	8	0	8	n	0.00	0	27	0	27	n	0.06	1	15	1	15	n	0.00	0	29	0	29	n	0.05	2	39	2	39	n	0.00	0	26	0	26	n	0.00	0	44	0	44	n	ENSMUSG00000015224.11	Cyp2j9	chr4	protein_coding	cytochrome P450, family 2, subfamily j, polypeptide 9
novel_NIR_14089	chr4	96474228	96480626	-	96474228	96479373	5pMXE	ENSMUST00000055693.9	novel	1.00	13	0	13	0	y	0.80	8	2	8	2	y	1.00	7	0	7	0	y	1.00	4	0	4	0	y	1.00	20	0	20	0	y	0.50	1	1	1	1	n	0.81	13	3	13	3	y	1.00	4	0	4	0	y	0.80	12	3	12	3	y	1.00	22	0	22	0	y	1.00	9	0	9	0	y	1.00	15	0	15	0	y	ENSMUSG00000015224.11	Cyp2j9	chr4	protein_coding	cytochrome P450, family 2, subfamily j, polypeptide 9
novel_NIR_14090	chr4	96474228	96503214	-	96474228	96479373	5pMXE	ENSMUST00000055693.9	novel	1.00	5	0	5	0	y	0.78	7	2	7	2	y	1.00	5	0	5	0	y	1.00	4	0	4	0	y	1.00	10	0	10	0	y	0.00	0	1	0	1	n	0.25	1	3	1	3	n	1.00	7	0	7	0	y	0.73	8	3	8	3	y	1.00	10	0	10	0	y	1.00	7	0	7	0	y	1.00	18	0	18	0	y	ENSMUSG00000015224.11	Cyp2j9	chr4	protein_coding	cytochrome P450, family 2, subfamily j, polypeptide 9
novel_NIR_14091	chr4	96474228	96518948	-	96474228	96479373	5pMXE	ENSMUST00000055693.9	novel	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	1.00	3	0	3	0	y	0.25	1	3	1	3	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000015224.11	Cyp2j9	chr4	protein_coding	cytochrome P450, family 2, subfamily j, polypeptide 9
novel_NIR_14092	chr4	96474228	96546829	-	96474228	96479373	5pMXE	ENSMUST00000055693.9	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000015224.11	Cyp2j9	chr4	protein_coding	cytochrome P450, family 2, subfamily j, polypeptide 9
novel_NIR_14093	chr4	9770210	9782626	+	9770694	9782626	5pMXE	ENSMUST00000124122.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000085558.8	4930412C18Rik	chr4	lncRNA	RIKEN cDNA 4930412C18 gene
novel_NIR_14094	chr4	9770210	9782626	+	9770821	9782626	5pMXE	ENSMUST00000138390.8	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000085558.8	4930412C18Rik	chr4	lncRNA	RIKEN cDNA 4930412C18 gene
novel_NIR_14095	chr4	9770210	9782626	+	9770948	9782626	5pMXE	ENSMUST00000154082.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000085558.8	4930412C18Rik	chr4	lncRNA	RIKEN cDNA 4930412C18 gene
novel_NIR_14096	chr4	9776197	9782626	+	9770694	9782626	A5SS	ENSMUST00000124122.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000085558.8	4930412C18Rik	chr4	lncRNA	RIKEN cDNA 4930412C18 gene
novel_NIR_14097	chr4	9776197	9782626	+	9770821	9782626	A5SS	ENSMUST00000138390.8	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	1.00	6	0	6	0	y	0.67	2	1	2	1	y	1.00	5	0	5	0	y	0.00	0	1	0	1	n	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00	0	3	0	3	n	ENSMUSG00000085558.8	4930412C18Rik	chr4	lncRNA	RIKEN cDNA 4930412C18 gene
novel_NIR_14098	chr4	9776197	9782626	+	9770948	9782626	A5SS	ENSMUST00000154082.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	0.00	0	1	0	1	n	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	0.50	1	1	1	1	n	0.00	0	1	0	1	n	ENSMUSG00000085558.8	4930412C18Rik	chr4	lncRNA	RIKEN cDNA 4930412C18 gene
novel_NIR_14099	chr4	9776197	9782626	+	9776197	9776768	3pMXE	ENSMUST00000146481.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.86	6	1	6	1	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	0.83	5	1	5	1	y	0.50	1	1	1	1	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000085558.8	4930412C18Rik	chr4	lncRNA	RIKEN cDNA 4930412C18 gene
novel_NIR_14100	chr4	9776197	9782626	+	9776197	9779275	3pMXE	ENSMUST00000144703.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000085558.8	4930412C18Rik	chr4	lncRNA	RIKEN cDNA 4930412C18 gene
novel_NIR_14101	chr4	9776197	9798099	+	9776197	9776768	3pMXE	ENSMUST00000146481.8	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000085558.8	4930412C18Rik	chr4	lncRNA	RIKEN cDNA 4930412C18 gene
novel_NIR_14102	chr4	9776197	9798099	+	9776197	9779275	3pMXE	ENSMUST00000144703.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000085558.8	4930412C18Rik	chr4	lncRNA	RIKEN cDNA 4930412C18 gene
novel_NIR_14103	chr4	97794769	97844611	+	97768406	97844611	A5SS	ENSMUST00000148930.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028565.19	Nfia	chr4	protein_coding	nuclear factor I/A
novel_NIR_14104	chr4	97794769	97844611	+	97799486	97844611	5pMXE	ENSMUST00000133011.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028565.19	Nfia	chr4	protein_coding	nuclear factor I/A
novel_NIR_14105	chr4	9782739	9798099	+	9782739	9784905	A3SS&ES	ENSMUST00000124122.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000085558.8	4930412C18Rik	chr4	lncRNA	RIKEN cDNA 4930412C18 gene
novel_NIR_14106	chr4	9782739	9798099	+	9782739	9819924	A3SS	ENSMUST00000138390.8	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	6	0	6	n	ENSMUSG00000085558.8	4930412C18Rik	chr4	lncRNA	RIKEN cDNA 4930412C18 gene
novel_NIR_14107	chr4	98263265	98271329	-	98263265	98271201	5pMXE	ENSMUST00000107051.10	novel	0.29	2	5	2	5	y	0.00	0	1	0	1	n	0.33	2	4	2	4	y	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.60	3	2	3	2	y	0.00	0	3	0	3	n	0.75	3	1	3	1	y	0.00	0	13	0	13	n	ENSMUSG00000028563.17	Tm2d1	chr4	protein_coding	TM2 domain containing 1
novel_NIR_14108	chr4	98268914	98271201	-	98263265	98271201	A3SS	ENSMUST00000107051.10	novel	0.17	1	5	1	5	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.67	2	1	2	1	y	0.00	0	13	0	13	n	ENSMUSG00000028563.17	Tm2d1	chr4	protein_coding	TM2 domain containing 1
novel_NIR_14109	chr4	98423824	98457176	+	98423824;98427295	98427196;98457176	ES	ENSMUST00000238306.2	novel	0.12	1	7.0	1	5;9	n	0.00	0	6.0	0	6;6	n	0.00	0	12.5	0	12;13	n	0.10	1	9.5	1	11;8	n	0.00	0	9.5	0	7;12	n	0.00	0	7.0	0	5;9	n	0.16	2	10.5	2	12;9	y	0.00	0	11.0	0	16;6	n	0.00	0	8.5	0	11;6	n	0.00	0	15.5	0	20;11	n	0.00	0	7.5	0	6;9	n	0.00	0	8.5	0	8;9	n	ENSMUSG00000061859.18	Patj	chr4	protein_coding	PATJ, crumbs cell polarity complex component
novel_NIR_14110	chr4	98423824	98457176	+	98435241	98457176	5pMXE	ENSMUST00000102792.10	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061859.18	Patj	chr4	protein_coding	PATJ, crumbs cell polarity complex component
novel_NIR_14111	chr4	98911696	98919014	-	98911696	98943559	A5SS	ENSMUST00000030286.14	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.60	3	2	3	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	ENSMUSG00000028556.16	Dock7	chr4	protein_coding	dedicator of cytokinesis 7
novel_NIR_14112	chr4	98923161	98923501	+	98923161	98932226	A3SS	ENSMUST00000125546.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	1.00	1	0	1	0	n	1.00	14	0	14	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	10	0	10	0	y	1.00	14	0	14	0	y	-	-	-	-	-	-	ENSMUSG00000028553.13	Angptl3	chr4	protein_coding	angiopoietin-like 3
novel_NIR_14113	chr4	98923161	98925610	+	98923161	98932226	A3SS	ENSMUST00000125546.2	novel	1.00	9	0	9	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028553.13	Angptl3	chr4	protein_coding	angiopoietin-like 3
novel_NIR_14114	chr4	98923161	98925646	+	98923161	98932226	A3SS	ENSMUST00000125546.2	novel	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000028553.13	Angptl3	chr4	protein_coding	angiopoietin-like 3
novel_NIR_14115	chr4	98923161	98925734	+	98923161	98932226	A3SS	ENSMUST00000125546.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	0.88	7	1	7	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028553.13	Angptl3	chr4	protein_coding	angiopoietin-like 3
novel_NIR_14116	chr4	98923161	98926070	+	98923161	98932226	A3SS	ENSMUST00000125546.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028553.13	Angptl3	chr4	protein_coding	angiopoietin-like 3
novel_NIR_14117	chr4	99104198	99106262	+	99104198	99106202	A3SS	ENSMUST00000030279.15	novel	0.10	3	26	3	26	n	0.20	2	8	2	8	y	0.11	2	17	2	17	n	0.22	6	21	6	21	y	0.12	6	43	6	43	n	0.00	0	15	0	15	n	0.00	0	18	0	18	n	0.16	5	27	5	27	y	0.00	0	11	0	11	n	0.00	0	40	0	40	n	0.10	2	18	2	18	n	0.04	1	26	1	26	n	ENSMUSG00000028550.16	Atg4c	chr4	protein_coding	autophagy related 4C, cysteine peptidase
novel_NIR_14118	chr4	99615184	99627451	+	99615184	99634563	A3SS	ENSMUST00000141870.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.80	4	1	4	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000073792.12	Alg6	chr4	protein_coding	asparagine-linked glycosylation 6 (alpha-1,3,-glucosyltransferase)
novel_NIR_14119	chr4	99615184	99627451	+	99615184	99636923	A3SS	ENSMUST00000139799.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.67	4	2	4	2	y	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000073792.12	Alg6	chr4	protein_coding	asparagine-linked glycosylation 6 (alpha-1,3,-glucosyltransferase)
novel_NIR_14120	chr4	99615184	99627451	+	99615184;99626450	99626361;99627451	ES	ENSMUST00000144805.8	novel	0.00	0	4.0	0	0;8	n	0.00	0	1.5	0	2;1	n	0.00	0	2.5	0	3;2	n	0.00	0	3.5	0	5;2	n	0.00	0	3.5	0	6;1	n	0.22	1	3.5	1	3;4	n	0.00	0	6.0	0	7;5	n	0.40	1	1.5	1	0;3	n	0.00	0	5.0	0	5;5	n	0.42	4	5.5	4	5;6	y	0.00	0	1.0	0	0;2	n	0.00	0	1.5	0	0;3	n	ENSMUSG00000073792.12	Alg6	chr4	protein_coding	asparagine-linked glycosylation 6 (alpha-1,3,-glucosyltransferase)
novel_NIR_14121	chr4	99632001	99632727	+	99615184	99632727	A5SS	ENSMUST00000107004.9	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.22	2	7	2	7	y	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	18	0	18	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	ENSMUSG00000073792.12	Alg6	chr4	protein_coding	asparagine-linked glycosylation 6 (alpha-1,3,-glucosyltransferase)
novel_NIR_14122	chr4	99632001	99632727	+	99632177	99632727	A5SS	ENSMUST00000144805.8	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000073792.12	Alg6	chr4	protein_coding	asparagine-linked glycosylation 6 (alpha-1,3,-glucosyltransferase)
novel_NIR_14123	chr4	99655813	99668999	-	99655813;99657778	99657731;99668999	ES	ENSMUST00000146258.2	novel	0.04	1	21.5	1	21;22	n	0.24	6	19.0	6	16;22	y	0.07	1	14.0	1	14;14	n	0.00	0	11.0	0	13;9	n	0.00	0	14.0	0	12;16	n	0.00	0	15.0	0	13;17	n	0.00	0	25.0	0	26;24	n	0.00	0	10.0	0	11;9	n	0.11	2	16.0	2	16;16	n	0.11	3	25.5	3	31;20	n	0.00	0	19.5	0	20;19	n	0.00	0	24.5	0	30;19	n	ENSMUSG00000028549.18	Itgb3bp	chr4	protein_coding	integrin beta 3 binding protein (beta3-endonexin)
novel_NIR_14124	chr4	99655813	99668999	-	99660626	99668999	3pMXE	ENSMUST00000123045.8	novel	1.00	1	0	1	0	n	1.00	6	0	6	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000028549.18	Itgb3bp	chr4	protein_coding	integrin beta 3 binding protein (beta3-endonexin)
novel_NIR_14125	chr4	99670207	99702295	-	99670207	99677838	A5SS&ES	ENSMUST00000123830.8	novel	0.00	0	14	0	14	n	0.07	1	13	1	13	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	21	0	21	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.05	1	19	1	19	n	0.15	2	11	2	11	y	0.00	0	16	0	16	n	ENSMUSG00000028549.18	Itgb3bp	chr4	protein_coding	integrin beta 3 binding protein (beta3-endonexin)
novel_NIR_14126	chr4	99670207	99702295	-	99670207;99677916	99677838;99702295	ES	ENSMUST00000123045.8	novel	0.00	0	12.5	0	14;11	n	0.10	1	9.5	1	13;6	n	0.00	0	11.5	0	14;9	n	0.00	0	10.0	0	7;13	n	0.00	0	13.0	0	12;14	n	0.00	0	8.5	0	6;11	n	0.00	0	22.5	0	21;24	n	0.00	0	8.5	0	13;4	n	0.00	0	12.5	0	10;15	n	0.06	1	15.0	1	19;11	n	0.15	2	11.5	2	11;12	y	0.00	0	13.5	0	16;11	n	ENSMUSG00000028549.18	Itgb3bp	chr4	protein_coding	integrin beta 3 binding protein (beta3-endonexin)
novel_NIR_14127	chr4	99953506	99954208	+	99953506	100160077	A3SS	ENSMUST00000039630.6	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000035305.6	Ror1	chr4	protein_coding	receptor tyrosine kinase-like orphan receptor 1
novel_NIR_14128	chr5	100188132	100206999	+	100188161	100206999	A5SS	ENSMUST00000169390.8	novel	0.07	1	13	1	13	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.40	2	3	2	3	y	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.18	2	9	2	9	y	0.00	0	7	0	7	n	0.00	0	7	0	7	n	ENSMUSG00000029326.14	Enoph1	chr5	protein_coding	enolase-phosphatase 1
novel_NIR_14129	chr5	100215800	100216626	+	100215800	100216155	3pMXE	ENSMUST00000031268.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000029326.14	Enoph1	chr5	protein_coding	enolase-phosphatase 1
novel_NIR_14130	chr5	100516211	100521239	-	100516211	100517455	A5SS&ES	ENSMUST00000182433.8	novel	0.15	20	114	20	114	y	0.18	31	146	31	146	y	0.09	21	218	21	218	n	0.13	23	157	23	157	n	0.13	29	200	29	200	n	0.10	12	106	12	106	n	0.16	25	135	25	135	y	0.14	17	104	17	104	n	0.15	17	99	17	99	y	0.11	21	164	21	164	n	0.08	13	146	13	146	n	0.15	25	140	25	140	y	ENSMUSG00000035325.17	Sec31a	chr5	protein_coding	Sec31 homolog A (S. cerevisiae)
novel_NIR_14131	chr5	100516211	100521239	-	100516211	100521284	A5SS	ENSMUST00000182988.8	novel	0.48	20	22	20	22	y	0.56	31	24	31	24	y	0.36	21	37	21	37	y	0.45	23	28	23	28	y	0.40	29	44	29	44	y	0.32	12	26	12	26	y	0.45	25	31	25	31	y	0.39	17	27	17	27	y	0.45	17	21	17	21	y	0.37	21	36	21	36	y	0.38	13	21	13	21	y	0.47	25	28	25	28	y	ENSMUSG00000035325.17	Sec31a	chr5	protein_coding	Sec31 homolog A (S. cerevisiae)
novel_NIR_14132	chr5	100516211	100521239	-	100516211	100523067	A5SS	ENSMUST00000182569.2	novel	0.95	20	1	20	1	y	1.00	31	0	31	0	y	0.88	21	3	21	3	y	1.00	23	0	23	0	y	0.85	29	5	29	5	y	0.80	12	3	12	3	y	0.89	25	3	25	3	y	0.89	17	2	17	2	y	0.85	17	3	17	3	y	0.84	21	4	21	4	y	0.68	13	6	13	6	y	0.93	25	2	25	2	y	ENSMUSG00000035325.17	Sec31a	chr5	protein_coding	Sec31 homolog A (S. cerevisiae)
novel_NIR_14133	chr5	100516211	100521239	-	100516211;100517493	100517455;100521239	ES	ENSMUST00000094578.11	novel	0.17	20	96.5	20	114;79	y	0.20	31	123.5	31	146;101	y	0.11	21	171.0	21	218;124	n	0.16	23	124.5	23	157;92	y	0.15	29	163.5	29	200;127	y	0.13	12	81.0	12	106;56	n	0.19	25	105.0	25	135;75	y	0.17	17	83.0	17	104;62	y	0.17	17	83.5	17	99;68	y	0.14	21	126.0	21	164;88	n	0.10	13	120.0	13	146;94	n	0.17	25	122.0	25	140;104	y	ENSMUSG00000035325.17	Sec31a	chr5	protein_coding	Sec31 homolog A (S. cerevisiae)
novel_NIR_14134	chr5	100555972	100563773	-	100555972	100563962	A5SS	ENSMUST00000094578.11	novel	0.18	13	58	13	58	y	0.16	6	31	6	31	y	0.14	17	106	17	106	n	0.21	24	93	24	93	y	0.13	16	103	16	103	n	0.13	8	54	8	54	n	0.18	17	76	17	76	y	0.21	14	52	14	52	y	0.19	10	43	10	43	y	0.12	9	68	9	68	n	0.07	3	41	3	41	n	0.10	9	85	9	85	n	ENSMUSG00000035325.17	Sec31a	chr5	protein_coding	Sec31 homolog A (S. cerevisiae)
novel_NIR_14135	chr5	100600951	100601873	-	100600951	100601799	A5SS	ENSMUST00000239512.1	novel	0.29	2	5	2	5	y	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.00	0	13	0	13	n	0.00	0	20	0	20	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	15	0	15	n	ENSMUSG00000118665.1	Lin54	chr5	protein_coding	--
novel_NIR_14136	chr5	100628180	100633618	-	100628180	100632999	A5SS	ENSMUST00000239512.1	novel	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.25	2	6	2	6	y	0.00	0	9	0	9	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000118665.1	Lin54	chr5	protein_coding	--
novel_NIR_14137	chr5	100628180	100633618	-	100628180	100633662	A5SS	ENSMUST00000239514.1	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	ENSMUSG00000118665.1	Lin54	chr5	protein_coding	--
novel_NIR_14138	chr5	100666416	100666681	+	100666416	100671877	A3SS	ENSMUST00000123069.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035297.15	Cops4	chr5	protein_coding	COP9 signalosome subunit 4
novel_NIR_14139	chr5	100666416	100666681	+	100666416	100676405	A3SS	ENSMUST00000151414.8	novel	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.25	1	3	1	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000035297.15	Cops4	chr5	protein_coding	COP9 signalosome subunit 4
novel_NIR_14140	chr5	100666416	100674225	+	100666416	100671877	A3SS&ES	ENSMUST00000123069.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035297.15	Cops4	chr5	protein_coding	COP9 signalosome subunit 4
novel_NIR_14141	chr5	100666416	100674225	+	100666416	100676405	A3SS	ENSMUST00000151414.8	novel	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000035297.15	Cops4	chr5	protein_coding	COP9 signalosome subunit 4
novel_NIR_14142	chr5	100710628	100712325	-	100710628	100710707	5pMXE	ENSMUST00000112910.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000029322.13	Plac8	chr5	protein_coding	placenta-specific 8
novel_NIR_14143	chr5	100710628	100715168	-	100710628	100710707	5pMXE	ENSMUST00000112910.2	novel	1.00	12	0	12	0	y	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	8	0	8	0	y	1.00	13	0	13	0	y	1.00	4	0	4	0	y	1.00	7	0	7	0	y	1.00	7	0	7	0	y	1.00	2	0	2	0	y	1.00	7	0	7	0	y	1.00	4	0	4	0	y	1.00	3	0	3	0	y	ENSMUSG00000029322.13	Plac8	chr5	protein_coding	placenta-specific 8
novel_NIR_14144	chr5	100710628	100715168	-	100710628	100720011	A5SS	ENSMUST00000031264.12	novel	0.29	12	30	12	30	y	0.19	7	30	7	30	y	0.00	0	76	0	76	n	0.28	8	21	8	21	y	0.22	13	47	13	47	y	0.12	4	28	4	28	n	0.11	7	57	7	57	n	0.26	7	20	7	20	y	0.13	2	13	2	13	n	0.32	7	15	7	15	y	0.17	4	20	4	20	y	0.20	3	12	3	12	y	ENSMUSG00000029322.13	Plac8	chr5	protein_coding	placenta-specific 8
novel_NIR_14145	chr5	100710628	100715502	-	100710628	100710707	5pMXE	ENSMUST00000112910.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029322.13	Plac8	chr5	protein_coding	placenta-specific 8
novel_NIR_14146	chr5	100811567	100813934	-	100811567	100821855	A5SS	ENSMUST00000126981.2	novel	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000029319.9	Coq2	chr5	protein_coding	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase
novel_NIR_14147	chr5	100811567	100813934	-	100811567	100822844	A5SS	ENSMUST00000127811.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029319.9	Coq2	chr5	protein_coding	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase
novel_NIR_14148	chr5	100836805	100840049	-	100836805;100839279	100839165;100840049	ES	ENSMUST00000045617.15	novel	0.00	0	1.0	0	1;1	n	0.00	0	3.0	0	3;3	n	0.18	2	9.0	2	11;7	y	0.00	0	4.0	0	5;3	n	0.00	0	6.5	0	6;7	n	0.00	0	2.5	0	2;3	n	0.00	0	5.0	0	7;3	n	0.00	0	1.0	0	1;1	n	0.00	0	1.0	0	2;0	n	0.00	0	0.5	0	1;0	n	0.00	0	2.5	0	1;4	n	0.00	0	3.0	0	3;3	n	ENSMUSG00000035273.15	Hpse	chr5	protein_coding	heparanase
novel_NIR_14149	chr5	100914667	100918264	-	100912941	100918264	A3SS	ENSMUST00000133845.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035266.17	Helq	chr5	protein_coding	helicase, POLQ-like
novel_NIR_14150	chr5	100914667	100918264	-	100914667;100916565	100916148;100918264	ES	ENSMUST00000155362.2	novel	0.00	0	3.5	0	7;0	n	0.00	0	3.5	0	7;0	n	0.00	0	6.5	0	13;0	n	0.00	0	2.0	0	4;0	n	0.00	0	4.5	0	9;0	n	0.00	0	2.5	0	5;0	n	0.24	2	6.5	2	13;0	y	0.00	0	3.0	0	6;0	n	0.00	0	4.0	0	8;0	n	0.00	0	3.0	0	6;0	n	0.00	0	4.0	0	8;0	n	0.00	0	6.0	0	12;0	n	ENSMUSG00000035266.17	Helq	chr5	protein_coding	helicase, POLQ-like
novel_NIR_14151	chr5	100919720	100921811	-	100919757	100921811	A3SS	ENSMUST00000044684.14	novel	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.29	2	5	2	5	y	0.00	0	8	0	8	n	ENSMUSG00000035266.17	Helq	chr5	protein_coding	helicase, POLQ-like
novel_NIR_14152	chr5	100954355	100954634	-	100954355	100954645	A5SS	ENSMUST00000153302.8	novel	0.10	1	9	1	9	n	0.05	1	21	1	21	n	0.00	0	23	0	23	n	0.00	0	21	0	21	n	0.11	2	16	2	16	n	0.00	0	8	0	8	n	0.06	1	17	1	17	n	0.06	1	15	1	15	n	0.07	1	14	1	14	n	0.06	2	32	2	32	n	0.13	4	27	4	27	n	0.17	3	15	3	15	y	ENSMUSG00000035234.19	Abraxas1	chr5	protein_coding	BRCA1 A complex subunit
novel_NIR_14153	chr5	100974653	100992988	-	100989671	100992988	3pMXE	ENSMUST00000142871.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000087611.2	4930458D05Rik	chr5	lncRNA	RIKEN cDNA 4930458D05 gene
novel_NIR_14154	chr5	101851967	101853064	+	101851976	101853064	A5SS	ENSMUST00000198824.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.67	2	1	2	1	y	0.25	1	3	1	3	n	0.00	0	8	0	8	n	0.40	4	6	4	6	y	0.67	2	1	2	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000106164.2	9430085M18Rik	chr5	lncRNA	RIKEN cDNA 9430085M18 gene
novel_NIR_14155	chr5	102013475	102014063	-	102011997	102014063	A3SS	ENSMUST00000053177.14	novel	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.04	1	22	1	22	n	0.00	0	15	0	15	n	0.00	0	27	0	27	n	0.00	0	11	0	11	n	0.00	0	18	0	18	n	0.00	0	6	0	6	n	0.16	3	16	3	16	y	0.00	0	27	0	27	n	0.00	0	11	0	11	n	0.00	0	24	0	24	n	ENSMUSG00000043940.16	Wdfy3	chr5	protein_coding	WD repeat and FYVE domain containing 3
novel_NIR_14156	chr5	102050420	102053970	-	102050426	102053970	A3SS	ENSMUST00000053177.14	novel	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	18	0	18	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.18	2	9	2	9	y	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	ENSMUSG00000043940.16	Wdfy3	chr5	protein_coding	WD repeat and FYVE domain containing 3
novel_NIR_14157	chr5	102105317	102108982	-	102105411	102108982	A3SS	ENSMUST00000053177.14	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000043940.16	Wdfy3	chr5	protein_coding	WD repeat and FYVE domain containing 3
novel_NIR_14158	chr5	102189609	102200757	-	102189609	102217462	A5SS	ENSMUST00000053177.14	novel	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.33	2	4	2	4	y	0.75	3	1	3	1	y	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.86	6	1	6	1	y	-	-	-	-	-	-	0.22	2	7	2	7	y	1.00	1	0	1	0	n	0.25	1	3	1	3	n	ENSMUSG00000043940.16	Wdfy3	chr5	protein_coding	WD repeat and FYVE domain containing 3
novel_NIR_14159	chr5	103684742	103698091	+	103684742	103688838	3pMXE	ENSMUST00000199412.5	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	ENSMUSG00000034573.15	Ptpn13	chr5	protein_coding	protein tyrosine phosphatase, non-receptor type 13
novel_NIR_14160	chr5	104017313	104018395	-	104015879	104018395	A3SS	ENSMUST00000112811.8	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	16	0	16	n	0.00	0	1	0	1	n	0.20	2	8	2	8	y	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	ENSMUSG00000029312.13	Klhl8	chr5	protein_coding	kelch-like 8
novel_NIR_14161	chr5	104034156	104038581	-	104034156	104058982	A5SS	ENSMUST00000031254.9	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.17	1	5	1	5	n	-	-	-	-	-	-	0.50	2	2	2	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000029312.13	Klhl8	chr5	protein_coding	kelch-like 8
novel_NIR_14162	chr5	104034156	104075558	-	104034156	104058982	5pMXE	ENSMUST00000031254.9	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.75	3	1	3	1	y	ENSMUSG00000029312.13	Klhl8	chr5	protein_coding	kelch-like 8
novel_NIR_14163	chr5	104101863	104113641	-	104104152	104113641	3pMXE	ENSMUST00000048118.15	novel	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.50	3	3	3	3	y	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.64	7	4	7	4	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000034528.16	Hsd17b13	chr5	protein_coding	hydroxysteroid (17-beta) dehydrogenase 13
novel_NIR_14164	chr5	104123465	104124972	-	104118759	104124972	A3SS	ENSMUST00000120320.8	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000034528.16	Hsd17b13	chr5	protein_coding	hydroxysteroid (17-beta) dehydrogenase 13
novel_NIR_14165	chr5	104614862	104615538	+	104614862	104624909	A3SS	ENSMUST00000086831.4	novel	0.00	0	16	0	16	n	0.25	1	3	1	3	n	0.02	1	42	1	42	n	0.04	1	22	1	22	n	0.00	0	18	0	18	n	0.20	1	4	1	4	n	0.20	4	16	4	16	y	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.15	3	17	3	17	y	0.00	0	9	0	9	n	0.00	0	16	0	16	n	ENSMUSG00000034462.10	Pkd2	chr5	protein_coding	polycystin 2, transient receptor potential cation channel
novel_NIR_14166	chr5	104672162	104673684	+	104672291	104673684	A5SS	ENSMUST00000239420.2	novel	0.75	3	1	3	1	y	0.50	2	2	2	2	y	0.50	5	5	5	5	y	0.42	5	7	5	7	y	0.60	3	2	3	2	y	0.33	1	2	1	2	n	0.80	4	1	4	1	y	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.14	1	6	1	6	n	ENSMUSG00000097392.5	Thoc2l	chr5	protein_coding	THO complex subunit 2-like
novel_NIR_14167	chr5	104686822	104689032	+	104686839	104689032	A5SS	ENSMUST00000239420.2	novel	0.00	0	21	0	21	n	0.00	0	9	0	9	n	0.00	0	24	0	24	n	0.00	0	21	0	21	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.25	3	9	3	9	y	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	20	0	20	n	0.10	1	9	1	9	n	0.00	0	11	0	11	n	ENSMUSG00000097392.5	Thoc2l	chr5	protein_coding	THO complex subunit 2-like
novel_NIR_14168	chr5	104686833	104689032	+	104686839	104689032	A5SS	ENSMUST00000239420.2	novel	0.05	1	21	1	21	n	0.10	1	9	1	9	n	0.08	2	24	2	24	n	0.00	0	21	0	21	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.18	2	9	2	9	y	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	20	0	20	n	0.00	0	9	0	9	n	0.08	1	11	1	11	n	ENSMUSG00000097392.5	Thoc2l	chr5	protein_coding	THO complex subunit 2-like
novel_NIR_14169	chr5	104953425	105007533	-	104985381	105007533	3pMXE	ENSMUST00000191135.2	novel	0.20	1	4	1	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000072774.11	Zfp951	chr5	protein_coding	zinc finger protein 951
novel_NIR_14170	chr5	104964989	105007533	-	104964989;104965218	104965174;105007533	ES	ENSMUST00000186219.7	novel	0.40	1	1.5	1	2;1	n	0.67	1	0.5	1	1;0	n	0.33	1	2.0	1	2;2	n	1.00	4	0.0	4	0;0	y	1.00	5	0.0	5	0;0	y	0.00	0	0.5	0	0;1	n	0.00	0	6.0	0	8;4	n	0.00	0	1.0	0	2;0	n	0.60	3	2.0	3	3;1	y	0.33	1	2.0	1	3;1	n	0.00	0	3.5	0	4;3	n	0.67	2	1.0	2	1;1	y	ENSMUSG00000072774.11	Zfp951	chr5	protein_coding	zinc finger protein 951
novel_NIR_14171	chr5	104964989	105007533	-	104985381	105007533	3pMXE	ENSMUST00000191135.2	novel	0.20	1	4	1	4	n	1.00	1	0	1	0	n	0.25	1	3	1	3	n	1.00	4	0	4	0	y	0.71	5	2	5	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000072774.11	Zfp951	chr5	protein_coding	zinc finger protein 951
novel_NIR_14172	chr5	105114277	105114594	-	105111543	105114594	A3SS	ENSMUST00000031239.13	novel	0.00	0	6	0	6	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	ENSMUSG00000029299.15	Abcg3	chr5	protein_coding	ATP binding cassette subfamily G member 3
novel_NIR_14173	chr5	105229189	105230570	-	105229189;105229619	105229517;105230570	ES	ENSMUST00000031238.13	novel	0.22	1	3.5	1	4;3	n	0.00	0	4.5	0	3;6	n	0.22	1	3.5	1	3;4	n	0.29	2	5.0	2	5;5	y	0.00	0	6.5	0	10;3	n	0.00	0	5.0	0	2;8	n	0.00	0	6.0	0	5;7	n	0.00	0	3.5	0	7;0	n	0.00	0	2.0	0	3;1	n	0.00	0	4.0	0	4;4	n	0.31	2	4.5	2	5;4	y	0.00	0	6.0	0	10;2	n	ENSMUSG00000029298.16	Gbp9	chr5	protein_coding	guanylate-binding protein 9
novel_NIR_14174	chr5	105438892	105443480	-	105438892	105441492	5pMXE	ENSMUST00000050011.10	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.15	4	23	4	23	y	0.29	2	5	2	5	y	0.00	0	17	0	17	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.08	1	12	1	12	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	ENSMUSG00000079362.6	Gm43302	chr5	protein_coding	predicted gene 43302
novel_NIR_14175	chr5	105472966	105474322	-	105472966;105473398	105473296;105474322	ES	ENSMUST00000100960.11	novel	0.00	0	5.0	0	7;3	n	0.00	0	5.0	0	7;3	n	0.00	0	2.5	0	2;3	n	0.00	0	10.5	0	8;13	n	0.17	1	5.0	1	6;4	n	0.00	0	2.5	0	3;2	n	0.12	1	7.0	1	9;5	n	0.00	0	5.0	0	4;6	n	0.18	3	13.5	3	19;8	y	0.13	2	13.5	2	15;12	n	0.00	0	14.0	0	11;17	n	0.04	1	24.5	1	29;20	n	ENSMUSG00000092021.9	Gbp11	chr5	polymorphic_pseudogene	guanylate binding protein 11
novel_NIR_14176	chr5	105479434	105489865	-	105479309	105489865	A3SS	ENSMUST00000100960.11	novel	0.50	3	3	3	3	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.56	5	4	5	4	y	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.17	2	10	2	10	y	0.00	0	11	0	11	n	ENSMUSG00000092021.9	Gbp11	chr5	polymorphic_pseudogene	guanylate binding protein 11
novel_NIR_14177	chr5	105491819	105493218	-	105491819	105494280	A5SS	ENSMUST00000100960.11	novel	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.25	2	6	2	6	y	0.00	0	12	0	12	n	0.00	0	15	0	15	n	ENSMUSG00000092021.9	Gbp11	chr5	polymorphic_pseudogene	guanylate binding protein 11
novel_NIR_14178	chr5	105848056	105880096	+	105848120	105880096	A5SS	ENSMUST00000060531.16	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.18	2	9	2	9	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	ENSMUSG00000046079.17	Lrrc8d	chr5	protein_coding	leucine rich repeat containing 8D
novel_NIR_14179	chr5	105848056	105880096	+	105848951	105880096	5pMXE	ENSMUST00000120847.8	novel	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.15	2	11	2	11	y	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	ENSMUSG00000046079.17	Lrrc8d	chr5	protein_coding	leucine rich repeat containing 8D
novel_NIR_14180	chr5	105848056	105880096	+	105879361	105880096	5pMXE	ENSMUST00000156630.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000046079.17	Lrrc8d	chr5	protein_coding	leucine rich repeat containing 8D
novel_NIR_14181	chr5	105848056	105880096	+	105879877	105880096	5pMXE	ENSMUST00000127686.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000046079.17	Lrrc8d	chr5	protein_coding	leucine rich repeat containing 8D
novel_NIR_14182	chr5	105848120	105862915	+	105848120	105880096	A3SS	ENSMUST00000060531.16	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.20	1	4	1	4	n	0.00	0	6	0	6	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.20	2	8	2	8	y	0.00	0	8	0	8	n	0.00	0	8	0	8	n	ENSMUSG00000046079.17	Lrrc8d	chr5	protein_coding	leucine rich repeat containing 8D
novel_NIR_14183	chr5	105848951	105852691	+	105848951	105876589	A3SS	ENSMUST00000135776.2	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000046079.17	Lrrc8d	chr5	protein_coding	leucine rich repeat containing 8D
novel_NIR_14184	chr5	105848951	105852691	+	105848951	105880096	A3SS	ENSMUST00000120847.8	novel	0.21	3	11	3	11	y	0.33	1	2	1	2	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.12	2	15	2	15	n	0.17	1	5	1	5	n	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.09	1	10	1	10	n	0.07	1	13	1	13	n	0.00	0	6	0	6	n	0.13	2	13	2	13	n	ENSMUSG00000046079.17	Lrrc8d	chr5	protein_coding	leucine rich repeat containing 8D
novel_NIR_14185	chr5	105848951	105862915	+	105848951	105876589	A3SS	ENSMUST00000135776.2	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000046079.17	Lrrc8d	chr5	protein_coding	leucine rich repeat containing 8D
novel_NIR_14186	chr5	105848951	105862915	+	105848951	105880096	A3SS	ENSMUST00000120847.8	novel	0.21	3	11	3	11	y	0.33	1	2	1	2	n	0.15	2	11	2	11	y	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.07	1	14	1	14	n	0.14	1	6	1	6	n	0.00	0	10	0	10	n	0.13	2	13	2	13	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	ENSMUSG00000046079.17	Lrrc8d	chr5	protein_coding	leucine rich repeat containing 8D
novel_NIR_14187	chr5	105848951	105959590	+	105848951	105876589	3pMXE	ENSMUST00000135776.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000046079.17	Lrrc8d	chr5	protein_coding	leucine rich repeat containing 8D
novel_NIR_14188	chr5	105848951	105959590	+	105848951	105880096	3pMXE	ENSMUST00000140608.2	novel	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.17	2	10	2	10	y	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	ENSMUSG00000046079.17	Lrrc8d	chr5	protein_coding	leucine rich repeat containing 8D
novel_NIR_14189	chr5	105852889	105880096	+	105848120	105880096	A5SS	ENSMUST00000060531.16	novel	0.00	0	4	0	4	n	0.67	2	1	2	1	y	0.10	1	9	1	9	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.33	4	8	4	8	y	0.00	0	8	0	8	n	0.00	0	8	0	8	n	ENSMUSG00000046079.17	Lrrc8d	chr5	protein_coding	leucine rich repeat containing 8D
novel_NIR_14190	chr5	105852889	105880096	+	105848951	105880096	A5SS	ENSMUST00000120847.8	novel	0.00	0	11	0	11	n	0.50	2	2	2	2	n	0.08	1	11	1	11	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.17	1	5	1	5	n	0.00	0	14	0	14	n	0.25	2	6	2	6	y	0.00	0	10	0	10	n	0.24	4	13	4	13	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	ENSMUSG00000046079.17	Lrrc8d	chr5	protein_coding	leucine rich repeat containing 8D
novel_NIR_14191	chr5	105852889	105880096	+	105879361	105880096	5pMXE	ENSMUST00000156630.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000046079.17	Lrrc8d	chr5	protein_coding	leucine rich repeat containing 8D
novel_NIR_14192	chr5	105852889	105880096	+	105879877	105880096	5pMXE	ENSMUST00000127686.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000046079.17	Lrrc8d	chr5	protein_coding	leucine rich repeat containing 8D
novel_NIR_14193	chr5	106034142	106036602	+	106034142	106038984	A3SS	ENSMUST00000138615.8	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000029290.13	Zfp326	chr5	protein_coding	zinc finger protein 326
novel_NIR_14194	chr5	106034294	106038984	+	106034142	106038984	A5SS	ENSMUST00000138615.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000029290.13	Zfp326	chr5	protein_coding	zinc finger protein 326
novel_NIR_14195	chr5	106705922	106716807	-	106705922	106767406	A5SS	ENSMUST00000149128.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000098302.2	Gm28039	chr5	lncRNA	predicted gene, 28039
novel_NIR_14196	chr5	106767508	106780791	-	106767508	106771951	5pMXE	ENSMUST00000112694.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000049606.17	Zfp644	chr5	protein_coding	zinc finger protein 644
novel_NIR_14197	chr5	106767508	106780791	-	106767508	106814651	A5SS	ENSMUST00000112695.4	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	0.33	2	4	2	4	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000049606.17	Zfp644	chr5	protein_coding	zinc finger protein 644
novel_NIR_14198	chr5	106767508	106780791	-	106767508	106844398	A5SS	ENSMUST00000149128.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	-	-	-	-	-	-	ENSMUSG00000098302.2	Gm28039	chr5	lncRNA	predicted gene, 28039
novel_NIR_14199	chr5	106814711	106843509	-	106814711	106815382	5pMXE	ENSMUST00000122980.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000049606.17	Zfp644	chr5	protein_coding	zinc finger protein 644
novel_NIR_14200	chr5	106814711	106843509	-	106814711	106827546	A5SS&ES	ENSMUST00000124263.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.29	2	5	2	5	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000049606.17	Zfp644	chr5	protein_coding	zinc finger protein 644
novel_NIR_14201	chr5	106814711	106843509	-	106814711	106843664	A5SS	ENSMUST00000045466.14	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000049606.17	Zfp644	chr5	protein_coding	zinc finger protein 644
novel_NIR_14202	chr5	106814711	106843509	-	106814711	106844100	A5SS	ENSMUST00000137285.8	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000049606.17	Zfp644	chr5	protein_coding	zinc finger protein 644
novel_NIR_14203	chr5	106814711	106843509	-	106814711	106844398	A5SS	ENSMUST00000112696.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	ENSMUSG00000049606.17	Zfp644	chr5	protein_coding	zinc finger protein 644
novel_NIR_14204	chr5	106814711	106843509	-	106838743	106843509	3pMXE	ENSMUST00000142391.8	novel	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.20	1	4	1	4	n	ENSMUSG00000049606.17	Zfp644	chr5	protein_coding	zinc finger protein 644
novel_NIR_14205	chr5	107518195	107524116	+	107518195	107524131	A3SS	ENSMUST00000031215.15	novel	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.50	1	1	1	1	n	0.25	2	6	2	6	y	0.00	0	4	0	4	n	0.00	0	11	0	11	n	ENSMUSG00000029279.16	Brdt	chr5	protein_coding	bromodomain, testis-specific
novel_NIR_14206	chr5	107600051	107602545	+	107600051	107609304	A3SS	ENSMUST00000162298.4	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000111375.5	Btbd8	chr5	protein_coding	BTB (POZ) domain containing 8
novel_NIR_14207	chr5	107697336	107698838	-	107697339	107698838	A3SS	ENSMUST00000078021.13	novel	0.00	0	9	0	9	n	0.09	1	10	1	10	n	0.23	3	10	3	10	y	0.00	0	14	0	14	n	0.00	0	18	0	18	n	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.29	2	5	2	5	y	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	ENSMUSG00000029276.14	Glmn	chr5	protein_coding	glomulin, FKBP associated protein
novel_NIR_14208	chr5	107749847	107751392	+	107749725	107751392	A5SS	ENSMUST00000112651.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000033773.15	Rpap2	chr5	protein_coding	RNA polymerase II associated protein 2
novel_NIR_14209	chr5	107780997	107809347	+	107780997	107789649	3pMXE	ENSMUST00000112650.8	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.43	3	4	3	4	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000033773.15	Rpap2	chr5	protein_coding	RNA polymerase II associated protein 2
novel_NIR_14210	chr5	107780997	107809347	+	107780997	107789820	3pMXE	ENSMUST00000112655.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033773.15	Rpap2	chr5	protein_coding	RNA polymerase II associated protein 2
novel_NIR_14211	chr5	107947126	107958156	-	107947126	107960224	A5SS	ENSMUST00000112642.8	novel	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.10	2	18	2	18	n	0.07	1	13	1	13	n	0.06	2	29	2	29	n	0.00	0	9	0	9	n	0.11	1	8	1	8	n	0.00	0	10	0	10	n	0.14	2	12	2	12	n	0.05	1	18	1	18	n	0.09	1	10	1	10	n	0.27	4	11	4	11	y	ENSMUSG00000011831.17	Evi5	chr5	protein_coding	ecotropic viral integration site 5
novel_NIR_14212	chr5	107969682	107989937	-	107969682	107985287	5pMXE	ENSMUST00000141673.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000011831.17	Evi5	chr5	protein_coding	ecotropic viral integration site 5
novel_NIR_14213	chr5	107969682	107989937	-	107985312	107989937	A3SS&ES	ENSMUST00000127579.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000011831.17	Evi5	chr5	protein_coding	ecotropic viral integration site 5
novel_NIR_14214	chr5	107998170	108016657	-	107990166	108016657	A3SS	ENSMUST00000128723.8	novel	0.00	0	7	0	7	n	0.38	3	5	3	5	y	0.08	2	23	2	23	n	0.05	1	20	1	20	n	0.00	0	17	0	17	n	0.07	1	13	1	13	n	0.00	0	16	0	16	n	0.27	3	8	3	8	y	0.00	0	9	0	9	n	0.00	0	21	0	21	n	0.00	0	14	0	14	n	0.00	0	19	0	19	n	ENSMUSG00000011831.17	Evi5	chr5	protein_coding	ecotropic viral integration site 5
novel_NIR_14215	chr5	107998170	108016657	-	107998170	108020467	A5SS	ENSMUST00000133411.2	novel	0.00	0	28	0	28	n	0.14	3	19	3	19	n	0.15	2	11	2	11	y	0.05	1	18	1	18	n	0.00	0	38	0	38	n	0.17	1	5	1	5	n	0.00	0	35	0	35	n	0.11	3	24	3	24	n	0.00	0	20	0	20	n	0.00	0	39	0	39	n	0.00	0	23	0	23	n	0.00	0	29	0	29	n	ENSMUSG00000011831.17	Evi5	chr5	protein_coding	ecotropic viral integration site 5
novel_NIR_14216	chr5	107998170	108022855	-	107990166	108022855	A3SS	ENSMUST00000112642.8	novel	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	ENSMUSG00000011831.17	Evi5	chr5	protein_coding	ecotropic viral integration site 5
novel_NIR_14217	chr5	107998170	108022855	-	108020857	108022855	3pMXE	ENSMUST00000132406.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000011831.17	Evi5	chr5	protein_coding	ecotropic viral integration site 5
novel_NIR_14218	chr5	108020541	108022855	-	107990166	108022855	A3SS	ENSMUST00000112642.8	novel	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.67	6	3	6	3	y	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.57	8	6	8	6	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	ENSMUSG00000011831.17	Evi5	chr5	protein_coding	ecotropic viral integration site 5
novel_NIR_14219	chr5	108020541	108022855	-	108020521	108022855	A3SS	ENSMUST00000132482.8	novel	0.00	0	20	0	20	n	0.08	1	12	1	12	n	0.00	0	22	0	22	n	0.00	0	19	0	19	n	0.00	0	43	0	43	n	0.00	0	13	0	13	n	0.13	6	39	6	39	n	0.00	0	15	0	15	n	0.00	0	19	0	19	n	0.20	8	32	8	32	y	0.00	0	21	0	21	n	0.00	0	34	0	34	n	ENSMUSG00000011831.17	Evi5	chr5	protein_coding	ecotropic viral integration site 5
novel_NIR_14220	chr5	108020541	108022855	-	108020857	108022855	A3SS	ENSMUST00000132406.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	8	0	8	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000011831.17	Evi5	chr5	protein_coding	ecotropic viral integration site 5
novel_NIR_14221	chr5	108052757	108055055	+	108052760	108055055	A5SS	ENSMUST00000082223.13	novel	0.15	303	1763	303	1763	y	0.00	0	1876	0	1876	n	0.21	586	2161	586	2161	y	0.00	0	1445	0	1445	n	0.03	77	2225	77	2225	n	0.00	0	1238	0	1238	n	0.19	535	2356	535	2356	y	0.00	0	1108	0	1108	n	0.00	0	1480	0	1480	n	0.00	0	2150	0	2150	n	0.00	0	2021	0	2021	n	0.00	0	2139	0	2139	n	ENSMUSG00000058558.13	Rpl5	chr5	protein_coding	ribosomal protein L5
novel_NIR_14222	chr5	108217229	108228691	+	108213831	108228691	A5SS	ENSMUST00000124195.8	novel	0.17	1	5	1	5	n	1.00	1	0	1	0	n	0.33	2	4	2	4	y	0.67	2	1	2	1	y	0.17	1	5	1	5	n	0.14	1	6	1	6	n	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.75	3	1	3	1	y	0.00	0	4	0	4	n	ENSMUSG00000029267.18	Mtf2	chr5	protein_coding	metal response element binding transcription factor 2
novel_NIR_14223	chr5	108217229	108228691	+	108215438	108228691	A5SS	ENSMUST00000163823.6	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000029267.18	Mtf2	chr5	protein_coding	metal response element binding transcription factor 2
novel_NIR_14224	chr5	108217229	108228691	+	108217229;108221320	108221173;108228691	ES	ENSMUST00000131264.8	novel	0.29	1	2.5	1	2;3	n	1.00	1	0.0	1	0;0	n	1.00	2	0.0	2	0;0	y	0.33	2	4.0	2	4;4	y	0.29	1	2.5	1	3;2	n	0.22	1	3.5	1	2;5	n	0.40	1	1.5	1	2;1	n	0.00	0	2.0	0	2;2	n	0.67	1	0.5	1	1;0	n	0.00	0	1.0	0	0;2	n	0.75	3	1.0	3	1;1	y	0.00	0	1.0	0	0;2	n	ENSMUSG00000029267.18	Mtf2	chr5	protein_coding	metal response element binding transcription factor 2
novel_NIR_14225	chr5	108217229	108228691	+	108217389	108228691	A5SS	ENSMUST00000141592.8	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000029267.18	Mtf2	chr5	protein_coding	metal response element binding transcription factor 2
novel_NIR_14226	chr5	108217229	108228691	+	108221320	108228691	A5SS&ES	ENSMUST00000131291.8	novel	0.25	1	3	1	3	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.33	2	4	2	4	y	0.33	1	2	1	2	n	0.17	1	5	1	5	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.75	3	1	3	1	y	0.00	0	2	0	2	n	ENSMUSG00000029267.18	Mtf2	chr5	protein_coding	metal response element binding transcription factor 2
novel_NIR_14227	chr5	108267274	108272504	-	108267274	108277884	A5SS	ENSMUST00000061203.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000063406.12	Tmed5	chr5	protein_coding	transmembrane p24 trafficking protein 5
novel_NIR_14228	chr5	108272625	108277884	-	108254848	108277884	A3SS	ENSMUST00000118036.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000063406.12	Tmed5	chr5	protein_coding	transmembrane p24 trafficking protein 5
novel_NIR_14229	chr5	108272625	108277884	-	108267274	108277884	A3SS	ENSMUST00000061203.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000063406.12	Tmed5	chr5	protein_coding	transmembrane p24 trafficking protein 5
novel_NIR_14230	chr5	108272625	108277884	-	108277418	108277884	3pMXE	ENSMUST00000117759.2	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.67	2	1	2	1	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000063406.12	Tmed5	chr5	protein_coding	transmembrane p24 trafficking protein 5
novel_NIR_14231	chr5	108591863	108592337	-	108591873	108592337	A3SS	ENSMUST00000031455.5	novel	0.00	0	5	0	5	n	0.43	3	4	3	4	y	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	ENSMUSG00000029490.5	Mfsd7a	chr5	protein_coding	major facilitator superfamily domain containing 7A
novel_NIR_14232	chr5	108592688	108593072	-	108592675	108593072	A3SS	ENSMUST00000031455.5	novel	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.22	2	7	2	7	y	ENSMUSG00000029490.5	Mfsd7a	chr5	protein_coding	major facilitator superfamily domain containing 7A
novel_NIR_14233	chr5	108596914	108619938	+	108609317	108619938	5pMXE	ENSMUST00000112597.8	novel	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.04	1	26	1	26	n	0.00	0	16	0	16	n	0.05	1	19	1	19	n	0.00	0	18	0	18	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.15	2	11	2	11	y	0.00	0	22	0	22	n	ENSMUSG00000033623.14	Pcgf3	chr5	protein_coding	polycomb group ring finger 3
novel_NIR_14234	chr5	108733400	108739050	-	108733400	108738970	A5SS	ENSMUST00000139303.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000062234.15	Gak	chr5	protein_coding	cyclin G associated kinase
novel_NIR_14235	chr5	108764912	108771126	-	108761504	108771126	A3SS	ENSMUST00000135225.8	novel	1.00	3	0	3	0	n	-	-	-	-	-	-	1.00	7	0	7	0	n	0.83	5	1	5	1	y	0.57	4	3	4	3	y	0.50	5	5	5	5	y	0.60	3	2	3	2	y	0.75	3	1	3	1	y	1.00	5	0	5	0	y	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.62	5	3	5	3	y	ENSMUSG00000062234.15	Gak	chr5	protein_coding	cyclin G associated kinase
novel_NIR_14236	chr5	108764912	108771126	-	108761504	108771126	A3SS	ENSMUST00000145935.6	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	0.83	5	1	5	1	n	0.57	4	3	4	3	n	0.50	5	5	5	5	n	0.60	3	2	3	2	n	0.75	3	1	3	1	n	1.00	5	0	5	0	n	1.00	2	0	2	0	n	0.00	0	2	0	2	n	0.62	5	3	5	3	n	ENSMUSG00000062234.15	Gak	chr5	protein_coding	cyclin G associated kinase
novel_NIR_14237	chr5	108764917	108767492	-	108764917	108772896	A5SS	ENSMUST00000199048.5	novel	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.33	2	4	2	4	y	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	ENSMUSG00000062234.15	Gak	chr5	protein_coding	cyclin G associated kinase
novel_NIR_14238	chr5	108772957	108777389	-	108772957	108777195	5pMXE	ENSMUST00000145935.6	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	ENSMUSG00000062234.15	Gak	chr5	protein_coding	cyclin G associated kinase
novel_NIR_14239	chr5	108772957	108777389	-	108772957	108777304	A5SS	ENSMUST00000199662.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	ENSMUSG00000062234.15	Gak	chr5	protein_coding	cyclin G associated kinase
novel_NIR_14240	chr5	108777766	108786139	+	108777766	108786103	A3SS	ENSMUST00000146207.6	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.23	3	10	3	10	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	ENSMUSG00000013495.16	Tmem175	chr5	protein_coding	transmembrane protein 175
novel_NIR_14241	chr5	108777766	108786139	+	108777909	108786139	5pMXE	ENSMUST00000078323.13	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000013495.16	Tmem175	chr5	protein_coding	transmembrane protein 175
novel_NIR_14242	chr5	108786571	108787341	+	108786571	108787338	A3SS	ENSMUST00000146207.6	novel	0.15	4	23	4	23	y	0.00	0	12	0	12	n	0.00	0	23	0	23	n	0.00	0	22	0	22	n	0.05	2	37	2	37	n	0.00	0	19	0	19	n	0.12	2	15	2	15	n	0.00	0	21	0	21	n	0.00	0	17	0	17	n	0.00	0	22	0	22	n	0.00	0	17	0	17	n	0.08	2	22	2	22	n	ENSMUSG00000013495.16	Tmem175	chr5	protein_coding	transmembrane protein 175
novel_NIR_14243	chr5	108798485	108798683	-	108797791	108798683	A3SS	ENSMUST00000153365.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000004815.13	Dgkq	chr5	protein_coding	diacylglycerol kinase, theta
novel_NIR_14244	chr5	108798485	108798683	-	108798504	108798683	A3SS	ENSMUST00000053913.13	novel	0.00	0	16	0	16	n	0.18	2	9	2	9	y	0.05	1	18	1	18	n	0.07	2	26	2	26	n	0.05	1	20	1	20	n	0.12	1	7	1	7	n	0.23	5	17	5	17	y	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.12	3	23	3	23	n	0.00	0	11	0	11	n	0.00	0	21	0	21	n	ENSMUSG00000004815.13	Dgkq	chr5	protein_coding	diacylglycerol kinase, theta
novel_NIR_14245	chr5	108802495	108802582	-	108802276	108802582	A3SS	ENSMUST00000153238.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000004815.13	Dgkq	chr5	protein_coding	diacylglycerol kinase, theta
novel_NIR_14246	chr5	108803437	108803710	-	108803459	108803710	A3SS	ENSMUST00000053913.13	novel	0.00	0	17	0	17	n	0.00	0	20	0	20	n	0.00	0	31	0	31	n	0.06	3	44	3	44	n	0.02	1	54	1	54	n	0.00	0	18	0	18	n	0.00	0	26	0	26	n	0.17	3	15	3	15	y	0.00	0	37	0	37	n	0.04	2	47	2	47	n	0.20	6	24	6	24	y	0.00	0	40	0	40	n	ENSMUSG00000004815.13	Dgkq	chr5	protein_coding	diacylglycerol kinase, theta
novel_NIR_14247	chr5	108808373	108816972	+	108808364	108816972	A5SS	ENSMUST00000071650.13	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	1.00	1	0	1	0	n	0.33	2	4	2	4	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	ENSMUSG00000033540.19	Idua	chr5	protein_coding	iduronidase, alpha-L
novel_NIR_14248	chr5	108829642	108829768	+	108828943	108829768	A5SS	ENSMUST00000139734.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000033540.19	Idua	chr5	protein_coding	iduronidase, alpha-L
novel_NIR_14249	chr5	108829642	108829768	+	108829458	108829768	A5SS	ENSMUST00000140620.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000033540.19	Idua	chr5	protein_coding	iduronidase, alpha-L
novel_NIR_14250	chr5	108829642	108829768	+	108829659	108829768	A5SS	ENSMUST00000071650.13	novel	0.17	1	5	1	5	n	0.00	0	11	0	11	n	0.20	2	8	2	8	y	0.00	0	4	0	4	n	0.06	1	15	1	15	n	0.00	0	5	0	5	n	0.06	1	17	1	17	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.11	1	8	1	8	n	0.00	0	11	0	11	n	ENSMUSG00000033540.19	Idua	chr5	protein_coding	iduronidase, alpha-L
novel_NIR_14251	chr5	108842984	108851162	+	108842984	108852533	A3SS	ENSMUST00000112560.8	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000008090.15	Fgfrl1	chr5	protein_coding	fibroblast growth factor receptor-like 1
novel_NIR_14252	chr5	109701045	109701933	-	109701511	109701933	A3SS&ES	ENSMUST00000196881.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000106028.2	Gm8493	chr5	unprocessed_pseudogene	predicted gene 8493
novel_NIR_14253	chr5	109845950	109944049	-	109917821	109944049	3pMXE	ENSMUST00000196262.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	ENSMUSG00000105471.2	A430073D23Rik	chr5	lncRNA	RIKEN cDNA A430073D23 gene
novel_NIR_14254	chr5	109933334	109944049	-	109917821	109944049	A3SS	ENSMUST00000196262.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000105471.2	A430073D23Rik	chr5	lncRNA	RIKEN cDNA A430073D23 gene
novel_NIR_14255	chr5	110071632	110075068	+	110071632	110088292	A3SS	ENSMUST00000112544.8	novel	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.12	1	7	1	7	n	0.43	3	4	3	4	y	0.33	2	4	2	4	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	ENSMUSG00000090015.9	Gm15446	chr5	protein_coding	predicted gene 15446
novel_NIR_14256	chr5	110071632	110077807	+	110071632	110088292	A3SS	ENSMUST00000112544.8	novel	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.12	1	7	1	7	n	0.00	0	4	0	4	n	0.33	2	4	2	4	y	0.29	2	5	2	5	n	0.00	0	6	0	6	n	ENSMUSG00000090015.9	Gm15446	chr5	protein_coding	predicted gene 15446
novel_NIR_14257	chr5	110071632	110080793	+	110071632	110088292	A3SS	ENSMUST00000112544.8	novel	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.20	1	4	1	4	n	0.80	8	2	8	2	n	0.00	0	7	0	7	n	0.43	3	4	3	4	n	0.43	3	4	3	4	n	0.50	5	5	5	5	y	0.00	0	6	0	6	n	ENSMUSG00000090015.9	Gm15446	chr5	protein_coding	predicted gene 15446
novel_NIR_14258	chr5	110080892	110088292	+	110081881	110088292	5pMXE	ENSMUST00000146564.2	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.50	5	5	5	5	y	0.14	1	6	1	6	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.17	1	5	1	5	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000090015.9	Gm15446	chr5	protein_coding	predicted gene 15446
novel_NIR_14259	chr5	110087377	110088292	+	110071632	110088292	A5SS	ENSMUST00000112544.8	novel	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.43	3	4	3	4	y	0.33	1	2	1	2	n	0.00	0	7	0	7	n	0.33	2	4	2	4	y	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.00	0	6	0	6	n	ENSMUSG00000090015.9	Gm15446	chr5	protein_coding	predicted gene 15446
novel_NIR_14260	chr5	110087377	110088292	+	110081881	110088292	A5SS	ENSMUST00000146564.2	novel	0.00	0	4	0	4	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.33	3	6	3	6	y	0.50	1	1	1	1	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	5	0	5	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	ENSMUSG00000090015.9	Gm15446	chr5	protein_coding	predicted gene 15446
novel_NIR_14261	chr5	110103670	110154810	+	110144496	110154810	5pMXE	ENSMUST00000143639.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000066613.15	Zfp932	chr5	protein_coding	zinc finger protein 932
novel_NIR_14262	chr5	110103670	110154810	+	110154487	110154810	5pMXE	ENSMUST00000187241.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000066613.15	Zfp932	chr5	protein_coding	zinc finger protein 932
novel_NIR_14263	chr5	110196137	110196888	-	110195550	110196888	A3SS	ENSMUST00000210275.2	novel	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	ENSMUSG00000090963.3	Gm17655	chr5	protein_coding	predicted gene, 17655
novel_NIR_14264	chr5	110197258	110205795	-	110197258	110220338	A5SS	ENSMUST00000210275.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000090963.3	Gm17655	chr5	protein_coding	predicted gene, 17655
novel_NIR_14265	chr5	110254646	110254736	-	110254608	110254736	A3SS	ENSMUST00000140538.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000033434.16	Gtpbp6	chr5	protein_coding	GTP binding protein 6 (putative)
novel_NIR_14266	chr5	110254646	110254736	-	110254649	110254736	A3SS	ENSMUST00000077220.14	novel	0.00	0	29	0	29	n	0.09	2	20	2	20	n	0.11	4	31	4	31	n	0.22	4	14	4	14	y	0.00	0	29	0	29	n	0.00	0	6	0	6	n	0.06	2	30	2	30	n	0.14	2	12	2	12	n	0.00	0	30	0	30	n	0.06	2	29	2	29	n	0.00	0	33	0	33	n	0.00	0	47	0	47	n	ENSMUSG00000033434.16	Gtpbp6	chr5	protein_coding	GTP binding protein 6 (putative)
novel_NIR_14267	chr5	110255110	110255722	-	110255063	110255722	A3SS	ENSMUST00000077220.14	novel	0.00	0	31	0	31	n	0.00	0	19	0	19	n	0.00	0	23	0	23	n	0.03	1	30	1	30	n	0.00	0	35	0	35	n	0.00	0	25	0	25	n	0.00	0	40	0	40	n	0.22	2	7	2	7	y	0.00	0	30	0	30	n	0.00	0	39	0	39	n	0.00	0	28	0	28	n	0.00	0	28	0	28	n	ENSMUSG00000033434.16	Gtpbp6	chr5	protein_coding	GTP binding protein 6 (putative)
novel_NIR_14268	chr5	110284060	110291417	+	110284060;110288319	110288220;110291417	ES	ENSMUST00000112519.9	novel	0.00	0	21.5	0	16;27	n	0.06	1	16.5	1	15;18	n	0.00	0	24.0	0	17;31	n	0.00	0	21.5	0	10;33	n	0.00	0	20.0	0	17;23	n	0.08	1	12.0	1	11;13	n	0.04	1	27.5	1	16;39	n	0.26	3	8.5	3	4;13	y	0.00	0	16.5	0	16;17	n	0.00	0	33.0	0	22;44	n	0.00	0	10.5	0	5;16	n	0.00	0	24.5	0	19;30	n	ENSMUSG00000014668.16	Chfr	chr5	protein_coding	checkpoint with forkhead and ring finger domains
novel_NIR_14269	chr5	110284060	110291417	+	110284060;110288319	110288242;110291417	ES	ENSMUST00000199283.2	novel	0.00	0	15.0	0	3;27	n	0.08	1	11.0	1	4;18	n	0.00	0	18.5	0	6;31	n	0.00	0	17.0	0	1;33	n	0.00	0	11.5	0	0;23	n	0.12	1	7.5	1	2;13	n	0.04	1	24.0	1	9;39	n	0.32	3	6.5	3	0;13	y	0.00	0	10.5	0	4;17	n	0.00	0	27.0	0	10;44	n	0.00	0	9.0	0	2;16	n	0.00	0	17.0	0	4;30	n	ENSMUSG00000014668.16	Chfr	chr5	protein_coding	checkpoint with forkhead and ring finger domains
novel_NIR_14270	chr5	110286458	110287983	+	110284060	110287983	A5SS	ENSMUST00000199672.5	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.22	2	7	2	7	y	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	ENSMUSG00000014668.16	Chfr	chr5	protein_coding	checkpoint with forkhead and ring finger domains
novel_NIR_14271	chr5	110288055	110288242	+	110284060	110288242	A5SS	ENSMUST00000199283.2	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.75	3	1	3	1	y	1.00	3	0	3	0	y	0.33	1	2	1	2	n	0.10	1	9	1	9	n	-	-	-	-	-	-	0.50	4	4	4	4	y	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000014668.16	Chfr	chr5	protein_coding	checkpoint with forkhead and ring finger domains
novel_NIR_14272	chr5	110288055	110288242	+	110288055	110288220	A3SS	ENSMUST00000199672.5	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	11	0	11	n	0.43	3	4	3	4	y	0.23	3	10	3	10	y	0.17	1	5	1	5	n	0.14	1	6	1	6	n	0.00	0	4	0	4	n	0.36	4	7	4	7	y	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000014668.16	Chfr	chr5	protein_coding	checkpoint with forkhead and ring finger domains
novel_NIR_14273	chr5	110294476	110324183	-	110303099	110324183	3pMXE	ENSMUST00000135366.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000086247.8	Gm15787	chr5	lncRNA	predicted gene 15787
novel_NIR_14274	chr5	110294476	110324183	-	110310475	110324183	3pMXE	ENSMUST00000130630.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000086247.8	Gm15787	chr5	lncRNA	predicted gene 15787
novel_NIR_14275	chr5	110294476	110324183	-	110318213	110324183	3pMXE	ENSMUST00000125250.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.75	3	1	3	1	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000086247.8	Gm15787	chr5	lncRNA	predicted gene 15787
novel_NIR_14276	chr5	110310475	110316061	-	110310475	110324183	A5SS	ENSMUST00000130630.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000086247.8	Gm15787	chr5	lncRNA	predicted gene 15787
novel_NIR_14277	chr5	110310475;110316350	110316061;110324183	-	110310475	110324183	cassetteExon	ENSMUST00000130630.2	novel	1.00	2.0	0	0;4	0	n	1.00	1.0	0	2;0	0	n	1.00	1.5	0	0;3	0	n	1.00	0.5	0	1;0	0	n	1.00	1.0	0	1;1	0	n	1.00	0.5	0	1;0	0	n	1.00	3.0	0	3;3	0	y	1.00	1.5	0	0;3	0	n	1.00	0.5	0	0;1	0	n	1.00	1.5	0	0;3	0	n	-	-	-	-	-	-	1.00	0.5	0	0;1	0	n	ENSMUSG00000086247.8	Gm15787	chr5	lncRNA	predicted gene 15787
novel_NIR_14278	chr5	110316350	110324183	-	110303099	110324183	A3SS	ENSMUST00000135366.8	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000086247.8	Gm15787	chr5	lncRNA	predicted gene 15787
novel_NIR_14279	chr5	110316350	110324183	-	110310475	110324183	A3SS	ENSMUST00000130630.2	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000086247.8	Gm15787	chr5	lncRNA	predicted gene 15787
novel_NIR_14280	chr5	110316350	110324183	-	110316350	110317679	5pMXE	ENSMUST00000156579.2	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	1.00	3	0	3	0	y	0.33	1	2	1	2	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000086247.8	Gm15787	chr5	lncRNA	predicted gene 15787
novel_NIR_14281	chr5	110316350	110324183	-	110316350;110318213	110318129;110324183	ES	ENSMUST00000130892.8	novel	0.89	4	0.5	4	0;1	y	-	-	-	-	-	-	0.86	3	0.5	3	0;1	y	0.00	0	0.5	0	1;0	n	0.50	1	1.0	1	1;1	n	-	-	-	-	-	-	0.75	3	1.0	3	0;2	y	0.75	3	1.0	3	2;0	y	0.50	1	1.0	1	1;1	n	0.86	3	0.5	3	0;1	y	0.00	0	1.0	0	1;1	n	1.00	1	0.0	1	0;0	n	ENSMUSG00000086247.8	Gm15787	chr5	lncRNA	predicted gene 15787
novel_NIR_14282	chr5	110316350	110324183	-	110316350;110321290	110321146;110324183	ES	ENSMUST00000141008.2	novel	1.00	4	0.0	4	0;0	y	-	-	-	-	-	-	0.86	3	0.5	3	0;1	y	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	1.00	3	0.0	3	0;0	y	1.00	3	0.0	3	0;0	y	1.00	1	0.0	1	0;0	n	1.00	3	0.0	3	0;0	y	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	ENSMUSG00000086247.8	Gm15787	chr5	lncRNA	predicted gene 15787
novel_NIR_14283	chr5	110316350	110324183	-	110318213	110324183	3pMXE	ENSMUST00000125250.2	novel	0.80	4	1	4	1	y	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.60	3	2	3	2	y	1.00	3	0	3	0	y	0.50	1	1	1	1	n	0.75	3	1	3	1	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	ENSMUSG00000086247.8	Gm15787	chr5	lncRNA	predicted gene 15787
novel_NIR_14284	chr5	110318269	110324183	-	110303099	110324183	A3SS	ENSMUST00000135366.8	novel	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000086247.8	Gm15787	chr5	lncRNA	predicted gene 15787
novel_NIR_14285	chr5	110318269	110324183	-	110310475	110324183	A3SS	ENSMUST00000130630.2	novel	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000086247.8	Gm15787	chr5	lncRNA	predicted gene 15787
novel_NIR_14286	chr5	110318269	110324183	-	110318213	110324183	A3SS	ENSMUST00000130892.8	novel	0.00	0	1	0	1	n	1.00	5	0	5	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000086247.8	Gm15787	chr5	lncRNA	predicted gene 15787
novel_NIR_14287	chr5	110318269	110324183	-	110321290	110324183	A3SS&ES	ENSMUST00000141008.2	novel	-	-	-	-	-	-	1.00	5	0	5	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000086247.8	Gm15787	chr5	lncRNA	predicted gene 15787
novel_NIR_14288	chr5	110324957	110329469	+	110324788	110329469	A5SS	ENSMUST00000112512.8	novel	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.09	2	20	2	20	n	0.00	0	13	0	13	n	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.08	1	11	1	11	n	0.23	3	10	3	10	y	0.23	3	10	3	10	y	0.00	0	20	0	20	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	ENSMUSG00000029502.15	Golga3	chr5	protein_coding	golgi autoantigen, golgin subfamily a, 3
novel_NIR_14289	chr5	110324957	110329469	+	110324915	110329469	A5SS	ENSMUST00000139611.8	novel	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.12	2	15	2	15	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.14	1	6	1	6	n	0.38	3	5	3	5	y	0.33	3	6	3	6	y	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	ENSMUSG00000029502.15	Golga3	chr5	protein_coding	golgi autoantigen, golgin subfamily a, 3
novel_NIR_14290	chr5	110368809	110369493	+	110368809	110369490	A3SS	ENSMUST00000112512.8	novel	0.04	2	44	2	44	n	0.00	0	45	0	45	n	0.07	7	87	7	87	n	0.00	0	47	0	47	n	0.00	0	64	0	64	n	0.11	4	34	4	34	n	0.00	0	62	0	62	n	0.03	1	32	1	32	n	0.08	3	36	3	36	n	0.00	0	47	0	47	n	0.16	6	31	6	31	y	0.00	0	57	0	57	n	ENSMUSG00000029502.15	Golga3	chr5	protein_coding	golgi autoantigen, golgin subfamily a, 3
novel_NIR_14291	chr5	110425640	110427650	-	110425640	110431512	A5SS	ENSMUST00000155266.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.56	5	4	5	4	y	0.67	2	1	2	1	y	0.67	2	1	2	1	y	ENSMUSG00000029499.12	Pxmp2	chr5	protein_coding	peroxisomal membrane protein 2
novel_NIR_14292	chr5	110428492	110429063	-	110428702	110429063	3pMXE	ENSMUST00000141550.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000029499.12	Pxmp2	chr5	protein_coding	peroxisomal membrane protein 2
novel_NIR_14293	chr5	110429247	110431512	-	110425640	110431512	A3SS	ENSMUST00000155266.2	novel	1.00	9	0	9	0	y	1.00	3	0	3	0	n	1.00	3	0	3	0	y	0.78	7	2	7	2	y	0.75	6	2	6	2	y	1.00	1	0	1	0	n	1.00	10	0	10	0	y	1.00	6	0	6	0	y	0.69	9	4	9	4	y	0.73	11	4	11	4	y	0.80	4	1	4	1	y	0.80	4	1	4	1	y	ENSMUSG00000029499.12	Pxmp2	chr5	protein_coding	peroxisomal membrane protein 2
novel_NIR_14294	chr5	110524148	110525223	-	110524148;110524336	110524268;110525223	ES	ENSMUST00000069483.12	novel	0.12	3	22.0	3	22;22	n	0.09	2	21.0	2	17;25	n	0.12	4	29.0	4	28;30	n	0.16	4	21.5	4	23;20	y	0.07	2	27.0	2	24;30	n	0.07	1	12.5	1	14;11	n	0.15	4	23.5	4	25;22	y	0.21	3	11.0	3	10;12	y	0.12	3	22.0	3	19;25	n	0.14	4	25.5	4	19;32	n	0.00	0	16.0	0	14;18	n	0.08	2	24.5	2	24;25	n	ENSMUSG00000043323.18	Fbrsl1	chr5	protein_coding	fibrosin-like 1
novel_NIR_14295	chr5	110525273	110526197	-	110525273	110525904	A5SS&ES	ENSMUST00000069483.12	novel	0.06	1	17	1	17	n	0.10	2	18	2	18	n	0.17	5	25	5	25	y	0.03	1	31	1	31	n	0.23	6	20	6	20	y	0.00	0	8	0	8	n	0.03	1	31	1	31	n	0.00	0	16	0	16	n	0.00	0	18	0	18	n	0.09	3	32	3	32	n	0.07	1	13	1	13	n	0.00	0	18	0	18	n	ENSMUSG00000043323.18	Fbrsl1	chr5	protein_coding	fibrosin-like 1
novel_NIR_14296	chr5	110526121	110526197	-	110526121	110526295	A5SS	ENSMUST00000069483.12	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.80	4	1	4	1	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000043323.18	Fbrsl1	chr5	protein_coding	fibrosin-like 1
novel_NIR_14297	chr5	110526121	110526197	-	110526121	110526760	A5SS	ENSMUST00000198768.3	novel	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.44	4	5	4	5	y	0.00	0	17	0	17	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	ENSMUSG00000043323.18	Fbrsl1	chr5	protein_coding	fibrosin-like 1
novel_NIR_14298	chr5	110527459	110543911	-	110527459	110534767	5pMXE	ENSMUST00000056124.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000043323.18	Fbrsl1	chr5	protein_coding	fibrosin-like 1
novel_NIR_14299	chr5	110527459	110565709	-	110527459	110534767	5pMXE	ENSMUST00000056124.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000043323.18	Fbrsl1	chr5	protein_coding	fibrosin-like 1
novel_NIR_14300	chr5	110529512	110532241	-	110529512	110534767	A5SS	ENSMUST00000198834.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000043323.18	Fbrsl1	chr5	protein_coding	fibrosin-like 1
novel_NIR_14301	chr5	110529512	110563896	-	110529512	110534767	5pMXE	ENSMUST00000198834.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000043323.18	Fbrsl1	chr5	protein_coding	fibrosin-like 1
novel_NIR_14302	chr5	110803279	110803436	+	110803279	110803431	A3SS	ENSMUST00000031478.6	novel	0.00	0	17	0	17	n	0.00	0	12	0	12	n	0.07	1	14	1	14	n	0.00	0	21	0	21	n	0.19	4	17	4	17	y	0.00	0	4	0	4	n	0.08	2	24	2	24	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.00	0	17	0	17	n	0.00	0	19	0	19	n	0.00	0	22	0	22	n	ENSMUSG00000029504.6	Ddx51	chr5	protein_coding	DEAD box helicase 51
novel_NIR_14303	chr5	110904632	110916177	-	110904632	110917915	A5SS	ENSMUST00000112433.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000029505.18	Ep400	chr5	protein_coding	E1A binding protein p400
novel_NIR_14304	chr5	110904632	110916177	-	110904632	110918358	A5SS	ENSMUST00000041558.15	novel	1.00	2	0	2	0	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.17	1	5	1	5	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.33	1	2	1	2	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.29	2	5	2	5	y	ENSMUSG00000029505.18	Ep400	chr5	protein_coding	E1A binding protein p400
novel_NIR_14305	chr5	110904632	110916177	-	110904632	110918525	A5SS	ENSMUST00000146652.2	novel	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000029505.18	Ep400	chr5	protein_coding	E1A binding protein p400
novel_NIR_14306	chr5	110927763	110928424	-	110927763	110928106	A5SS	ENSMUST00000031483.15	novel	0.17	2	10	2	10	y	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.00	0	21	0	21	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	24	0	24	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	ENSMUSG00000029507.17	Pus1	chr5	protein_coding	pseudouridine synthase 1
novel_NIR_14307	chr5	110927763	110928424	-	110927763	110928420	A5SS	ENSMUST00000031481.13	novel	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000029507.17	Pus1	chr5	protein_coding	pseudouridine synthase 1
novel_NIR_14308	chr5	110927763	110928424	-	110927763	110928428	A5SS	ENSMUST00000170468.8	novel	0.25	2	6	2	6	y	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	18	0	18	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	ENSMUSG00000029507.17	Pus1	chr5	protein_coding	pseudouridine synthase 1
novel_NIR_14309	chr5	110927763	110928454	-	110927763	110928106	A5SS	ENSMUST00000031483.15	novel	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.00	0	21	0	21	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.11	2	16	2	16	n	0.00	0	7	0	7	n	0.17	2	10	2	10	y	0.00	0	24	0	24	n	0.00	0	12	0	12	n	0.12	2	15	2	15	n	ENSMUSG00000029507.17	Pus1	chr5	protein_coding	pseudouridine synthase 1
novel_NIR_14310	chr5	110927763	110928454	-	110927763	110928420	A5SS	ENSMUST00000031481.13	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	ENSMUSG00000029507.17	Pus1	chr5	protein_coding	pseudouridine synthase 1
novel_NIR_14311	chr5	110927763	110928454	-	110927763	110928428	A5SS	ENSMUST00000170468.8	novel	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	18	0	18	n	0.00	0	7	0	7	n	0.20	2	8	2	8	y	0.00	0	2	0	2	n	0.29	2	5	2	5	y	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.25	2	6	2	6	y	ENSMUSG00000029507.17	Pus1	chr5	protein_coding	pseudouridine synthase 1
novel_NIR_14312	chr5	110935550	110935639	-	110935527	110935639	A3SS	ENSMUST00000196094.5	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	6	0	6	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029512.12	Ulk1	chr5	protein_coding	unc-51 like kinase 1
novel_NIR_14313	chr5	110940910	110941241	-	110940979	110941241	A3SS	ENSMUST00000196440.5	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.33	2	4	2	4	y	ENSMUSG00000029512.12	Ulk1	chr5	protein_coding	unc-51 like kinase 1
novel_NIR_14314	chr5	110997552	111006240	+	110997552;111003699	111003591;111006240	ES	ENSMUST00000066160.3	novel	0.00	0	2.5	0	2;3	n	0.00	0	2.0	0	2;2	n	-	-	-	-	-	-	0.00	0	3.5	0	4;3	n	0.00	0	2.0	0	3;1	n	0.00	0	1.5	0	2;1	n	0.00	0	6.0	0	6;6	n	0.00	0	1.5	0	1;2	n	0.00	0	2.5	0	2;3	n	0.62	4	2.5	4	3;2	y	-	-	-	-	-	-	0.00	0	7.0	0	6;8	n	ENSMUSG00000029521.8	Chek2	chr5	protein_coding	checkpoint kinase 2
novel_NIR_14315	chr5	110997552	111006240	+	111003699	111006240	A5SS&ES	ENSMUST00000199937.5	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.67	4	2	4	2	y	-	-	-	-	-	-	0.00	0	8	0	8	n	ENSMUSG00000029521.8	Chek2	chr5	protein_coding	checkpoint kinase 2
novel_NIR_14316	chr5	111040976	111091487	+	111040976	111061072	3pMXE	ENSMUST00000143505.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033209.18	Ttc28	chr5	protein_coding	tetratricopeptide repeat domain 28
novel_NIR_14317	chr5	111040976	111091487	+	111040976	111232888	A3SS	ENSMUST00000040111.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033209.18	Ttc28	chr5	protein_coding	tetratricopeptide repeat domain 28
novel_NIR_14318	chr5	111483391	111486180	+	111483391	111486149	A3SS	ENSMUST00000086635.9	novel	0.10	15	131	15	131	n	0.10	8	74	8	74	n	0.14	29	175	29	175	n	0.03	5	158	5	158	n	0.06	12	205	12	205	n	0.16	13	68	13	68	y	0.13	21	146	21	146	n	0.12	14	103	14	103	n	0.09	11	111	11	111	n	0.12	23	163	23	163	n	0.06	7	116	7	116	n	0.05	9	183	9	183	n	ENSMUSG00000050017.12	Pitpnb	chr5	protein_coding	phosphatidylinositol transfer protein, beta
novel_NIR_14319	chr5	111565627	111602482	+	111569749	111602482	A5SS	ENSMUST00000094463.5	novel	0.09	1	10	1	10	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.06	1	17	1	17	n	0.09	1	10	1	10	n	0.00	0	23	0	23	n	0.20	3	12	3	12	y	0.00	0	10	0	10	n	ENSMUSG00000070576.5	Mn1	chr5	protein_coding	meningioma 1
novel_NIR_14320	chr5	112424788	112451766	+	112436678	112451766	5pMXE	ENSMUST00000151947.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	ENSMUSG00000029344.16	Tpst2	chr5	protein_coding	protein-tyrosine sulfotransferase 2
novel_NIR_14321	chr5	112426200	112451766	+	112436678	112451766	5pMXE	ENSMUST00000151947.3	novel	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000029344.16	Tpst2	chr5	protein_coding	protein-tyrosine sulfotransferase 2
novel_NIR_14322	chr5	112428091	112451766	+	112436678	112451766	5pMXE	ENSMUST00000151947.3	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000029344.16	Tpst2	chr5	protein_coding	protein-tyrosine sulfotransferase 2
novel_NIR_14323	chr5	112445692	112451766	+	112436678	112451766	A5SS	ENSMUST00000151947.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	3	3	3	3	y	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	ENSMUSG00000029344.16	Tpst2	chr5	protein_coding	protein-tyrosine sulfotransferase 2
novel_NIR_14324	chr5	112516141	112516802	+	112514837	112516802	A5SS	ENSMUST00000112359.9	novel	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.00	0	19	0	19	n	0.00	0	12	0	12	n	0.00	0	20	0	20	n	0.00	0	8	0	8	n	0.00	0	17	0	17	n	0.00	0	14	0	14	n	0.25	2	6	2	6	y	0.00	0	18	0	18	n	0.00	0	17	0	17	n	0.00	0	24	0	24	n	ENSMUSG00000042328.14	Hps4	chr5	protein_coding	HPS4, biogenesis of lysosomal organelles complex 3 subunit 2
novel_NIR_14325	chr5	113225543	113227626	-	113226417	113227626	3pMXE	ENSMUST00000140352.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029352.15	Crybb3	chr5	protein_coding	crystallin, beta B3
novel_NIR_14326	chr5	113249443	113300934	-	113249443	113310924	A5SS	ENSMUST00000050125.9	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000051339.11	2900026A02Rik	chr5	protein_coding	RIKEN cDNA 2900026A02 gene
novel_NIR_14327	chr5	113249443	113300934	-	113249443	113323071	A5SS	ENSMUST00000211733.2	novel	0.12	1	7	1	7	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	18	0	18	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.33	3	6	3	6	y	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	ENSMUSG00000051339.11	2900026A02Rik	chr5	protein_coding	RIKEN cDNA 2900026A02 gene
novel_NIR_14328	chr5	113340062	113341627	-	113340065	113341627	A3SS	ENSMUST00000211733.2	novel	0.75	3	1	3	1	y	-	-	-	-	-	-	0.50	1	1	1	1	n	0.80	4	1	4	1	y	1.00	4	0	4	0	y	-	-	-	-	-	-	0.75	3	1	3	1	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	0.71	5	2	5	2	y	0.67	2	1	2	1	y	0.50	1	1	1	1	n	ENSMUSG00000051339.11	2900026A02Rik	chr5	protein_coding	RIKEN cDNA 2900026A02 gene
novel_NIR_14329	chr5	113341773	113369073	-	113341773	113369077	A5SS	ENSMUST00000211733.2	novel	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000051339.11	2900026A02Rik	chr5	protein_coding	RIKEN cDNA 2900026A02 gene
novel_NIR_14330	chr5	113427572	113428193	-	113427486	113428193	A3SS	ENSMUST00000048112.13	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.67	2	1	2	1	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000042216.14	Sgsm1	chr5	protein_coding	small G protein signaling modulator 1
novel_NIR_14331	chr5	114088644	114089940	-	114088647	114089940	A3SS	ENSMUST00000159592.8	novel	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.05	1	19	1	19	n	0.00	0	14	0	14	n	0.20	2	8	2	8	y	0.04	1	24	1	24	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.06	1	16	1	16	n	ENSMUSG00000042121.17	Ssh1	chr5	protein_coding	slingshot protein phosphatase 1
novel_NIR_14332	chr5	114108535	114110789	-	114108535	114127707	A5SS	ENSMUST00000159592.8	novel	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.06	1	17	1	17	n	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.00	0	12	0	12	n	0.06	1	15	1	15	n	0.15	2	11	2	11	y	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	ENSMUSG00000042121.17	Ssh1	chr5	protein_coding	slingshot protein phosphatase 1
novel_NIR_14333	chr5	114127747	114131685	-	114127747	114131725	A5SS	ENSMUST00000159592.8	novel	0.22	2	7	2	7	y	0.00	0	4	0	4	n	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.14	1	6	1	6	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.20	1	4	1	4	n	ENSMUSG00000042121.17	Ssh1	chr5	protein_coding	slingshot protein phosphatase 1
novel_NIR_14334	chr5	114263791	114263921	-	114263791	114265587	A5SS	ENSMUST00000053657.13	novel	0.28	5	13	5	13	n	0.14	4	25	4	25	n	0.28	16	42	16	42	n	0.33	12	24	12	24	n	0.17	6	30	6	30	n	0.29	2	5	2	5	n	0.36	13	23	13	23	n	0.33	10	20	10	20	n	0.29	5	12	5	12	n	0.30	10	23	10	23	n	0.09	2	21	2	21	n	0.31	12	27	12	27	y	ENSMUSG00000044339.13	Alkbh2	chr5	protein_coding	alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase
novel_NIR_14335	chr5	114263791;114263997	114263921;114265587	-	114263791	114265587	cassetteExon	ENSMUST00000053657.13	novel	0.19	3.0	13	5;1	13	n	0.07	2.0	25	4;0	25	n	0.18	9.0	42	16;2	42	y	0.21	6.5	24	12;1	24	n	0.10	3.5	30	6;1	30	n	0.33	2.5	5	2;3	5	y	0.22	6.5	23	13;0	23	n	0.20	5.0	20	10;0	20	n	0.20	3.0	12	5;1	12	n	0.18	5.0	23	10;0	23	n	0.05	1.0	21	2;0	21	n	0.18	6.0	27	12;0	27	n	ENSMUSG00000044339.13	Alkbh2	chr5	protein_coding	alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase
novel_NIR_14336	chr5	114263791;114264168	114263921;114265587	-	114263791	114265587	cassetteExon	ENSMUST00000053657.13	novel	0.21	3.5	13	5;2	13	y	0.09	2.5	25	4;1	25	n	0.20	10.5	42	16;5	42	y	0.23	7.0	24	12;2	24	y	0.17	6.0	30	6;6	30	y	0.33	2.5	5	2;3	5	y	0.25	7.5	23	13;2	23	y	0.22	5.5	20	10;1	20	n	0.17	2.5	12	5;0	12	n	0.21	6.0	23	10;2	23	y	0.07	1.5	21	2;1	21	n	0.18	6.0	27	12;0	27	n	ENSMUSG00000044339.13	Alkbh2	chr5	protein_coding	alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase
novel_NIR_14337	chr5	114265830	114267172	-	114265830	114265937	5pMXE	ENSMUST00000053657.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	9	0	9	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000044339.13	Alkbh2	chr5	protein_coding	alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase
novel_NIR_14338	chr5	114265830	114267172	-	114265830	114266022	5pMXE	ENSMUST00000149418.2	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.82	9	2	9	2	y	0.50	2	2	2	2	y	0.14	1	6	1	6	n	-	-	-	-	-	-	1.00	4	0	4	0	y	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.75	6	2	6	2	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000044339.13	Alkbh2	chr5	protein_coding	alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase
novel_NIR_14339	chr5	114265830	114267172	-	114265830	114266144	5pMXE	ENSMUST00000112279.2	novel	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.47	9	10	9	10	y	0.20	2	8	2	8	y	0.12	1	7	1	7	n	0.00	0	3	0	3	n	0.33	4	8	4	8	y	0.00	0	6	0	6	n	0.07	1	13	1	13	n	0.50	6	6	6	6	y	0.11	1	8	1	8	n	0.10	1	9	1	9	n	ENSMUSG00000044339.13	Alkbh2	chr5	protein_coding	alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase
novel_NIR_14340	chr5	114265830	114268517	-	114265830	114265937	5pMXE	ENSMUST00000053657.13	novel	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	5	0	5	0	y	1.00	5	0	5	0	y	1.00	8	0	8	0	y	0.33	1	2	1	2	n	1.00	7	0	7	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000044339.13	Alkbh2	chr5	protein_coding	alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase
novel_NIR_14341	chr5	114265830	114268517	-	114265830	114266022	5pMXE	ENSMUST00000149418.2	novel	-	-	-	-	-	-	0.57	4	3	4	3	y	0.71	5	2	5	2	y	0.71	5	2	5	2	y	0.57	8	6	8	6	y	1.00	1	0	1	0	n	1.00	7	0	7	0	y	0.75	3	1	3	1	y	0.50	2	2	2	2	y	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000044339.13	Alkbh2	chr5	protein_coding	alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase
novel_NIR_14342	chr5	114265830	114268517	-	114265830	114266144	5pMXE	ENSMUST00000112279.2	novel	0.00	0	7	0	7	n	0.33	4	8	4	8	y	0.33	5	10	5	10	y	0.38	5	8	5	8	y	0.53	8	7	8	7	y	0.25	1	3	1	3	n	0.47	7	8	7	8	y	0.33	3	6	3	6	y	0.13	2	13	2	13	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.25	3	9	3	9	y	ENSMUSG00000044339.13	Alkbh2	chr5	protein_coding	alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase
novel_NIR_14343	chr5	114269929	114270242	+	114269574	114270242	A5SS	ENSMUST00000031587.13	novel	0.00	0	24	0	24	n	0.03	1	29	1	29	n	0.04	2	53	2	53	n	0.00	0	31	0	31	n	0.03	1	35	1	35	n	0.25	2	6	2	6	y	0.04	1	24	1	24	n	0.00	0	18	0	18	n	0.00	0	11	0	11	n	0.00	0	30	0	30	n	0.00	0	18	0	18	n	0.00	0	24	0	24	n	ENSMUSG00000029591.15	Ung	chr5	protein_coding	uracil DNA glycosylase
novel_NIR_14344	chr5	114269929	114270242	+	114270147	114270242	5pMXE	ENSMUST00000137402.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.67	2	1	2	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000029591.15	Ung	chr5	protein_coding	uracil DNA glycosylase
novel_NIR_14345	chr5	114284886	114287538	+	114284886	114303570	A3SS	ENSMUST00000102582.8	novel	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.05	1	18	1	18	n	0.00	0	14	0	14	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	ENSMUSG00000042010.17	Acacb	chr5	protein_coding	acetyl-Coenzyme A carboxylase beta
novel_NIR_14346	chr5	114293606	114303570	+	114284886	114303570	A5SS	ENSMUST00000102582.8	novel	0.27	3	8	3	8	y	0.75	3	1	3	1	y	0.00	0	13	0	13	n	0.33	5	10	5	10	y	0.40	4	6	4	6	y	0.00	0	8	0	8	n	0.00	0	18	0	18	n	0.00	0	14	0	14	n	0.77	10	3	10	3	y	0.75	15	5	15	5	y	0.40	2	3	2	3	y	1.00	12	0	12	0	y	ENSMUSG00000042010.17	Acacb	chr5	protein_coding	acetyl-Coenzyme A carboxylase beta
novel_NIR_14347	chr5	114349154	114349699	+	114349154	114350712	A3SS	ENSMUST00000102582.8	novel	0.17	4	19	4	19	y	0.22	2	7	2	7	y	0.07	1	14	1	14	n	0.00	0	28	0	28	n	0.00	0	24	0	24	n	0.00	0	20	0	20	n	0.16	5	27	5	27	n	0.10	2	18	2	18	n	0.20	6	24	6	24	n	0.16	7	37	7	37	n	0.03	1	28	1	28	n	0.05	1	18	1	18	n	ENSMUSG00000042010.17	Acacb	chr5	protein_coding	acetyl-Coenzyme A carboxylase beta
novel_NIR_14348	chr5	114349154;114349761	114349699;114350712	+	114349154	114350712	cassetteExon	ENSMUST00000102582.8	novel	0.10	2.0	19	4;0	19	n	0.12	1.0	7	2;0	7	n	0.12	2.0	14	1;3	14	n	0.00	0.0	28	0;0	28	n	0.04	1.0	24	0;2	24	n	0.00	0.0	20	0;0	20	n	0.11	3.5	27	5;2	27	n	0.12	2.5	18	2;3	18	n	0.16	4.5	24	6;3	24	y	0.10	4.0	37	7;1	37	n	0.05	1.5	28	1;2	28	n	0.05	1.0	18	1;1	18	n	ENSMUSG00000042010.17	Acacb	chr5	protein_coding	acetyl-Coenzyme A carboxylase beta
novel_NIR_14349	chr5	114510198	114512957	-	114507088	114512957	A3SS	ENSMUST00000134532.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000001098.16	Kctd10	chr5	protein_coding	potassium channel tetramerisation domain containing 10
novel_NIR_14350	chr5	114852862	114853045	+	114852862	114853614	A3SS	ENSMUST00000094441.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000002486.16	Tchp	chr5	protein_coding	trichoplein, keratin filament binding
novel_NIR_14351	chr5	114852862	114853045	+	114852862	114853683	A3SS	ENSMUST00000131679.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000002486.16	Tchp	chr5	protein_coding	trichoplein, keratin filament binding
novel_NIR_14352	chr5	114856521	114856939	+	114856521	114857640	A3SS	ENSMUST00000094441.11	novel	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.17	2	10	2	10	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000002486.16	Tchp	chr5	protein_coding	trichoplein, keratin filament binding
novel_NIR_14353	chr5	114907811	114911082	-	114907811	114911375	A5SS	ENSMUST00000112185.9	novel	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.15	2	11	2	11	y	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	16	0	16	n	ENSMUSG00000041890.18	Git2	chr5	protein_coding	GIT ArfGAP 2
novel_NIR_14354	chr5	114907811	114911082	-	114907811	114913453	A5SS	ENSMUST00000131016.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041890.18	Git2	chr5	protein_coding	GIT ArfGAP 2
novel_NIR_14355	chr5	115061391	115061462	+	115061391	115061469	A3SS	ENSMUST00000031540.11	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	0.20	1	4	1	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000041827.16	Oasl1	chr5	protein_coding	2'-5' oligoadenylate synthetase-like 1
novel_NIR_14356	chr5	115061668	115066086	+	115061668	115067981	A3SS	ENSMUST00000155394.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041827.16	Oasl1	chr5	protein_coding	2'-5' oligoadenylate synthetase-like 1
novel_NIR_14357	chr5	115094061	115098107	-	115094061	115108578	A5SS	ENSMUST00000176911.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000029556.13	Hnf1a	chr5	protein_coding	HNF1 homeobox A
novel_NIR_14358	chr5	115107136	115135824	+	115108096	115135824	5pMXE	ENSMUST00000125010.3	novel	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.33	2	4	2	4	y	0.00	0	10	0	10	n	0.09	1	10	1	10	n	0.00	0	10	0	10	n	ENSMUSG00000086054.3	Hnf1aos1	chr5	lncRNA	HNF1 homeobox A, opposite strand 1
novel_NIR_14359	chr5	115107136;115108096	115108028;115123808	+	115107136	115123808	cassetteExon	ENSMUST00000129609.2	novel	1.00	4.0	0	0;8	0	n	1.00	1.5	0	0;3	0	n	1.00	0.5	0	0;1	0	n	0.64	3.5	2	1;6	2	n	1.00	1.0	0	0;2	0	n	-	-	-	-	-	-	1.00	6.5	0	0;13	0	n	-	-	-	-	-	-	0.71	5.0	2	4;6	2	y	0.81	8.5	2	0;17	2	n	0.78	7.0	2	0;14	2	n	0.64	7.0	4	0;14	4	n	ENSMUSG00000086054.3	Hnf1aos1	chr5	lncRNA	HNF1 homeobox A, opposite strand 1
novel_NIR_14360	chr5	115108096	115120277	+	115108096	115135824	A3SS	ENSMUST00000125010.3	novel	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.09	1	10	1	10	n	0.09	1	10	1	10	n	ENSMUSG00000086054.3	Hnf1aos1	chr5	lncRNA	HNF1 homeobox A, opposite strand 1
novel_NIR_14361	chr5	115108096	115123808	+	115107136	115123808	A5SS	ENSMUST00000129609.2	novel	1.00	8	0	8	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.75	6	2	6	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	13	0	13	0	y	-	-	-	-	-	-	0.75	6	2	6	2	n	0.89	17	2	17	2	y	0.88	14	2	14	2	y	0.78	14	4	14	4	y	ENSMUSG00000086054.3	Hnf1aos1	chr5	lncRNA	HNF1 homeobox A, opposite strand 1
novel_NIR_14362	chr5	115108096	115123808	+	115108096	115135824	A3SS	ENSMUST00000125010.3	novel	0.89	8	1	8	1	y	0.38	3	5	3	5	y	0.33	1	2	1	2	n	0.55	6	5	6	5	y	0.33	2	4	2	4	y	-	-	-	-	-	-	0.59	13	9	13	9	y	0.00	0	4	0	4	n	0.60	6	4	6	4	y	0.63	17	10	17	10	y	0.58	14	10	14	10	y	0.58	14	10	14	10	y	ENSMUSG00000086054.3	Hnf1aos1	chr5	lncRNA	HNF1 homeobox A, opposite strand 1
novel_NIR_14363	chr5	115108096	115123812	+	115108096	115117288	A3SS&ES	ENSMUST00000131845.2	novel	0.23	3	10	3	10	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.44	8	10	8	10	y	-	-	-	-	-	-	0.12	3	22	3	22	n	0.29	2	5	2	5	y	0.33	3	6	3	6	y	0.21	5	19	5	19	y	0.29	6	15	6	15	y	0.08	1	11	1	11	n	ENSMUSG00000086054.3	Hnf1aos1	chr5	lncRNA	HNF1 homeobox A, opposite strand 1
novel_NIR_14364	chr5	115108096	115123812	+	115108096	115135824	A3SS	ENSMUST00000125010.3	novel	0.75	3	1	3	1	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.67	8	4	8	4	y	-	-	-	-	-	-	0.25	3	9	3	9	y	0.33	2	4	2	4	y	0.43	3	4	3	4	y	0.33	5	10	5	10	y	0.38	6	10	6	10	y	0.09	1	10	1	10	n	ENSMUSG00000086054.3	Hnf1aos1	chr5	lncRNA	HNF1 homeobox A, opposite strand 1
novel_NIR_14365	chr5	115117412	115117660	+	115117412	115118219	A3SS	ENSMUST00000131845.2	novel	0.29	2	5	2	5	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	14	0	14	n	-	-	-	-	-	-	0.00	0	13	0	13	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.05	1	18	1	18	n	0.07	1	14	1	14	n	ENSMUSG00000086054.3	Hnf1aos1	chr5	lncRNA	HNF1 homeobox A, opposite strand 1
novel_NIR_14366	chr5	115117412	115135824	+	115108096	115135824	A5SS	ENSMUST00000125010.3	novel	0.00	0	1	0	1	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.23	3	10	3	10	y	0.00	0	10	0	10	n	0.09	1	10	1	10	n	ENSMUSG00000086054.3	Hnf1aos1	chr5	lncRNA	HNF1 homeobox A, opposite strand 1
novel_NIR_14367	chr5	115118358	115120282	+	115118358	115120277	A3SS	ENSMUST00000131845.2	novel	0.00	0	3	0	3	n	0.10	1	9	1	9	n	0.00	0	2	0	2	n	0.80	4	1	4	1	y	0.00	0	12	0	12	n	-	-	-	-	-	-	0.32	8	17	8	17	y	0.00	0	1	0	1	n	0.45	10	12	10	12	y	0.16	3	16	3	16	y	0.13	2	13	2	13	n	0.00	0	7	0	7	n	ENSMUSG00000086054.3	Hnf1aos1	chr5	lncRNA	HNF1 homeobox A, opposite strand 1
novel_NIR_14368	chr5	115118358	115123808	+	115107136	115123808	A5SS	ENSMUST00000129609.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000086054.3	Hnf1aos1	chr5	lncRNA	HNF1 homeobox A, opposite strand 1
novel_NIR_14369	chr5	115120440	115123808	+	115107136	115123808	A5SS	ENSMUST00000129609.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.80	8	2	8	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.82	9	2	9	2	y	0.00	0	4	0	4	n	ENSMUSG00000086054.3	Hnf1aos1	chr5	lncRNA	HNF1 homeobox A, opposite strand 1
novel_NIR_14370	chr5	115120440	115123808	+	115120440;115123353	115123263;115123808	ES	ENSMUST00000131845.2	novel	0.00	0	2.5	0	2;3	n	0.25	1	3.0	1	0;6	n	0.00	0	0.5	0	0;1	n	0.55	8	6.5	8	6;7	y	0.00	0	4.0	0	4;4	n	0.00	0	1.0	0	2;0	n	0.00	0	6.5	0	4;9	n	0.60	3	2.0	3	1;3	y	0.10	1	9.0	1	6;12	n	0.00	0	7.0	0	7;7	n	0.50	9	9.0	9	9;9	y	0.00	0	6.5	0	7;6	n	ENSMUSG00000086054.3	Hnf1aos1	chr5	lncRNA	HNF1 homeobox A, opposite strand 1
novel_NIR_14371	chr5	115120440	115123812	+	115120440	115123263	A3SS&ES	ENSMUST00000131845.2	novel	0.00	0	2	0	2	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.33	3	6	3	6	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.60	6	4	6	4	y	0.50	1	1	1	1	n	0.00	0	6	0	6	n	0.50	7	7	7	7	y	0.31	4	9	4	9	y	0.50	7	7	7	7	y	ENSMUSG00000086054.3	Hnf1aos1	chr5	lncRNA	HNF1 homeobox A, opposite strand 1
novel_NIR_14372	chr5	115120440	115135824	+	115108096	115135824	A5SS	ENSMUST00000125010.3	novel	0.00	0	1	0	1	n	0.29	2	5	2	5	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.25	3	9	3	9	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	ENSMUSG00000086054.3	Hnf1aos1	chr5	lncRNA	HNF1 homeobox A, opposite strand 1
novel_NIR_14373	chr5	115246394	115248252	-	115241587	115248252	A3SS	ENSMUST00000100847.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000072692.8	Rpl37rt	chr5	transcribed_processed_pseudogene	ribosomal protein L37, retrotransposed
novel_NIR_14374	chr5	115382199	115383908	-	115380750	115383908	A3SS	ENSMUST00000139853.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	ENSMUSG00000041740.17	Rnf10	chr5	protein_coding	ring finger protein 10
novel_NIR_14375	chr5	115436892	115437799	-	115436892	115437359	5pMXE	ENSMUST00000123292.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000009013.6	Dynll1	chr5	protein_coding	dynein light chain LC8-type 1
novel_NIR_14376	chr5	115468717	115470191	+	115468717	115469509	A3SS&ES	ENSMUST00000209604.2	novel	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	4	2	4	2	y	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000029538.15	Srsf9	chr5	protein_coding	serine and arginine-rich splicing factor 9
novel_NIR_14377	chr5	115468717	115470191	+	115468717	115469520	A3SS&ES	ENSMUST00000149510.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000029538.15	Srsf9	chr5	protein_coding	serine and arginine-rich splicing factor 9
novel_NIR_14378	chr5	115471654	115473526	-	115472653	115473526	A3SS	ENSMUST00000139167.3	novel	0.00	0	50	0	50	n	0.00	0	35	0	35	n	0.00	0	45	0	45	n	0.00	0	62	0	62	n	0.00	0	65	0	65	n	0.00	0	28	0	28	n	0.18	10	47	10	47	y	0.00	0	49	0	49	n	0.00	0	44	0	44	n	0.00	0	71	0	71	n	0.00	0	49	0	49	n	0.00	0	47	0	47	n	ENSMUSG00000029536.9	Gatc	chr5	protein_coding	glutamyl-tRNA(Gln) amidotransferase, subunit C
novel_NIR_14379	chr5	115616467	115618290	-	115616467	115617661	5pMXE	ENSMUST00000154729.2	novel	0.00	0	21	0	21	n	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	24	0	24	n	0.29	2	5	2	5	y	0.00	0	14	0	14	n	0.06	1	15	1	15	n	0.00	0	7	0	7	n	0.11	2	16	2	16	n	0.17	3	15	3	15	y	0.00	0	9	0	9	n	ENSMUSG00000029524.17	Sirt4	chr5	protein_coding	sirtuin 4
novel_NIR_14380	chr5	115616467	115618290	-	115616467;115617871	115617661;115618290	ES	ENSMUST00000112067.8	novel	0.00	0	17.0	0	21;13	n	0.00	0	17.5	0	14;21	n	0.00	0	15.0	0	12;18	n	0.00	0	20.0	0	14;26	n	0.00	0	18.0	0	24;12	n	0.20	2	8.0	2	5;11	y	0.00	0	22.0	0	14;30	n	0.07	1	13.0	1	15;11	n	0.00	0	9.0	0	7;11	n	0.08	2	22.0	2	16;28	n	0.13	3	19.5	3	15;24	n	0.00	0	20.5	0	9;32	n	ENSMUSG00000029524.17	Sirt4	chr5	protein_coding	sirtuin 4
novel_NIR_14381	chr5	115618584	115620946	-	115618584	115620634	A5SS	ENSMUST00000148139.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.57	4	3	4	3	y	0.50	1	1	1	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000029524.17	Sirt4	chr5	protein_coding	sirtuin 4
novel_NIR_14382	chr5	115618584	115620946	-	115618584	115620683	A5SS	ENSMUST00000112067.8	novel	0.00	0	18	0	18	n	0.00	0	17	0	17	n	0.18	4	18	4	18	y	0.04	1	23	1	23	n	0.03	1	28	1	28	n	0.00	0	12	0	12	n	0.03	1	35	1	35	n	0.00	0	11	0	11	n	0.00	0	20	0	20	n	0.00	0	26	0	26	n	0.00	0	37	0	37	n	0.00	0	20	0	20	n	ENSMUSG00000029524.17	Sirt4	chr5	protein_coding	sirtuin 4
novel_NIR_14383	chr5	115630253	115653833	+	115653403	115653833	5pMXE	ENSMUST00000149608.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000086849.2	Gm13840	chr5	lncRNA	predicted gene 13840
novel_NIR_14384	chr5	115630253	115682402	+	115644927	115682402	5pMXE	ENSMUST00000067268.15	novel	0.03	1	33	1	33	n	0.00	0	20	0	20	n	0.57	35	26	35	26	y	0.02	1	50	1	50	n	0.00	0	45	0	45	n	0.07	2	27	2	27	n	0.00	0	37	0	37	n	0.00	0	27	0	27	n	0.00	0	45	0	45	n	0.00	0	61	0	61	n	0.00	0	38	0	38	n	0.00	0	38	0	38	n	ENSMUSG00000029528.20	Pxn	chr5	protein_coding	paxillin
novel_NIR_14385	chr5	115630253	115682402	+	115654544	115682402	5pMXE	ENSMUST00000129897.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	35	0	35	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029528.20	Pxn	chr5	protein_coding	paxillin
novel_NIR_14386	chr5	115630253	115682402	+	115658591	115682402	5pMXE	ENSMUST00000125007.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	35	0	35	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029528.20	Pxn	chr5	protein_coding	paxillin
novel_NIR_14387	chr5	115630253	115682402	+	115681120	115682402	5pMXE	ENSMUST00000137716.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	35	0	35	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029528.20	Pxn	chr5	protein_coding	paxillin
novel_NIR_14388	chr5	115630253	115682402	+	115681146	115682402	5pMXE	ENSMUST00000157050.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	35	0	35	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029528.20	Pxn	chr5	protein_coding	paxillin
novel_NIR_14389	chr5	115630253	115682402	+	115682059	115682402	5pMXE	ENSMUST00000153682.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	35	0	35	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029528.20	Pxn	chr5	protein_coding	paxillin
novel_NIR_14390	chr5	115630253	115682402	+	115682242	115682402	5pMXE	ENSMUST00000202564.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	35	0	35	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029528.20	Pxn	chr5	protein_coding	paxillin
novel_NIR_14391	chr5	115644927	115653833	+	115644927	115682402	A3SS	ENSMUST00000067268.15	novel	0.23	10	33	10	33	y	0.33	10	20	10	20	y	0.24	8	26	8	26	y	0.07	4	50	4	50	n	0.22	13	45	13	45	y	0.21	7	27	7	27	n	0.14	6	37	6	37	n	0.16	5	27	5	27	y	0.08	4	45	4	45	n	0.12	8	61	8	61	n	0.34	20	38	20	38	y	0.22	11	38	11	38	y	ENSMUSG00000029528.20	Pxn	chr5	protein_coding	paxillin
novel_NIR_14392	chr5	115644927	115653833	+	115653403	115653833	5pMXE	ENSMUST00000149608.2	novel	1.00	10	0	10	0	y	1.00	10	0	10	0	y	1.00	8	0	8	0	y	1.00	4	0	4	0	y	1.00	13	0	13	0	y	1.00	7	0	7	0	y	1.00	6	0	6	0	y	1.00	5	0	5	0	y	1.00	4	0	4	0	y	1.00	8	0	8	0	y	1.00	20	0	20	0	y	1.00	11	0	11	0	y	ENSMUSG00000086849.2	Gm13840	chr5	lncRNA	predicted gene 13840
novel_NIR_14393	chr5	115651759	115653833	+	115653403	115653833	5pMXE	ENSMUST00000149608.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000086849.2	Gm13840	chr5	lncRNA	predicted gene 13840
novel_NIR_14394	chr5	115687773	115688180	+	115687171	115688180	A5SS	ENSMUST00000212819.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029528.20	Pxn	chr5	protein_coding	paxillin
novel_NIR_14395	chr5	115697947	115698843	+	115697947	115698778	A3SS	ENSMUST00000156359.2	novel	0.67	2	1	2	1	y	0.40	2	3	2	3	y	0.25	1	3	1	3	n	0.60	3	2	3	2	y	0.50	3	3	3	3	y	0.30	3	7	3	7	y	1.00	1	0	1	0	n	0.25	1	3	1	3	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.75	3	1	3	1	y	ENSMUSG00000067274.11	Rplp0	chr5	protein_coding	ribosomal protein, large, P0
novel_NIR_14396	chr5	115741393	115742076	+	115741393	115742069	A3SS	ENSMUST00000064454.12	novel	0.10	4	37	4	37	n	0.00	0	20	0	20	n	0.11	5	40	5	40	n	0.00	0	41	0	41	n	0.12	5	35	5	35	n	0.00	0	12	0	12	n	0.00	0	42	0	42	n	0.21	4	15	4	15	y	0.00	0	15	0	15	n	0.00	0	34	0	34	n	0.05	1	20	1	20	n	0.00	0	25	0	25	n	ENSMUSG00000041638.19	Gcn1	chr5	protein_coding	GCN1 activator of EIF2AK4
novel_NIR_14397	chr5	115789994	115790686	-	115789998	115790686	A3SS	ENSMUST00000118576.8	novel	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.00	0	4	0	4	n	ENSMUSG00000041609.17	Bicdl1	chr5	protein_coding	BICD family like cargo adaptor 1
novel_NIR_14398	chr5	116553529	116557474	-	116553529	116553818	5pMXE	ENSMUST00000133335.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041548.5	Hspb8	chr5	protein_coding	heat shock protein 8
novel_NIR_14399	chr5	116553529	116560595	-	116553529	116553818	5pMXE	ENSMUST00000133335.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	11	0	11	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000041548.5	Hspb8	chr5	protein_coding	heat shock protein 8
novel_NIR_14400	chr5	116573274	116577428	+	116576897	116577428	5pMXE	ENSMUST00000133548.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000086219.8	Srrm4os	chr5	lncRNA	serine/arginine repetitive matrix 4, opposite strand
novel_NIR_14401	chr5	116584363	116599783	+	116577495	116599783	A5SS	ENSMUST00000133548.5	novel	1.00	6	0	6	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.67	4	2	4	2	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000086219.8	Srrm4os	chr5	lncRNA	serine/arginine repetitive matrix 4, opposite strand
novel_NIR_14402	chr5	116584606	116599783	+	116577495	116599783	A5SS	ENSMUST00000133548.5	novel	-	-	-	-	-	-	1.00	15	0	15	0	y	1.00	17	0	17	0	y	-	-	-	-	-	-	1.00	16	0	16	0	y	1.00	9	0	9	0	y	0.88	14	2	14	2	y	1.00	13	0	13	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	6	0	6	0	y	ENSMUSG00000086219.8	Srrm4os	chr5	lncRNA	serine/arginine repetitive matrix 4, opposite strand
novel_NIR_14403	chr5	116593933	116599783	+	116577495	116599783	A5SS	ENSMUST00000133548.5	novel	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	5	0	5	0	y	-	-	-	-	-	-	0.50	2	2	2	2	y	1.00	1	0	1	0	n	0.88	7	1	7	1	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	ENSMUSG00000086219.8	Srrm4os	chr5	lncRNA	serine/arginine repetitive matrix 4, opposite strand
novel_NIR_14404	chr5	116599923	116600454	+	116599862	116600454	A5SS	ENSMUST00000126959.5	novel	0.09	1	10	1	10	n	0.36	5	9	5	9	y	0.36	8	14	8	14	y	0.22	2	7	2	7	y	0.11	1	8	1	8	n	0.23	3	10	3	10	y	0.36	9	16	9	16	y	0.18	3	14	3	14	y	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.12	1	7	1	7	n	0.00	0	13	0	13	n	ENSMUSG00000086219.8	Srrm4os	chr5	lncRNA	serine/arginine repetitive matrix 4, opposite strand
novel_NIR_14405	chr5	117258404	117331694	+	117271840	117331694	5pMXE	ENSMUST00000092889.12	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061288.14	Taok3	chr5	protein_coding	TAO kinase 3
novel_NIR_14406	chr5	117495763	117501656	+	117499270	117501656	5pMXE	ENSMUST00000138071.2	novel	-	-	-	-	-	-	0.67	4	2	4	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029364.16	Wsb2	chr5	protein_coding	WD repeat and SOCS box-containing 2
novel_NIR_14407	chr5	118115535	118115923	+	118115412	118115923	A5SS	ENSMUST00000200780.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000032898.10	Fbxo21	chr5	protein_coding	F-box protein 21
novel_NIR_14408	chr5	119709031	119709518	-	119708779	119709518	A3SS	ENSMUST00000202307.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000087516.8	Tbx3os1	chr5	lncRNA	T-box 3, opposite strand 1
novel_NIR_14409	chr5	119709031	119709518	-	119708793	119709518	A3SS	ENSMUST00000201466.4	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.75	6	2	6	2	y	-	-	-	-	-	-	0.33	3	6	3	6	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.80	4	1	4	1	y	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000087516.8	Tbx3os1	chr5	lncRNA	T-box 3, opposite strand 1
novel_NIR_14410	chr5	119718421	119755895	-	119718421	119765347	A5SS	ENSMUST00000202307.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000087516.8	Tbx3os1	chr5	lncRNA	T-box 3, opposite strand 1
novel_NIR_14411	chr5	119718421	119755895	-	119750107	119755895	3pMXE	ENSMUST00000134493.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.60	3	2	3	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000087516.8	Tbx3os1	chr5	lncRNA	T-box 3, opposite strand 1
novel_NIR_14412	chr5	119765687	119769700	+	119764095	119769700	A5SS	ENSMUST00000156235.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000085708.2	Gm16063	chr5	lncRNA	predicted gene 16063
novel_NIR_14413	chr5	119765703	119769700	+	119764095	119769700	A5SS	ENSMUST00000156235.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000085708.2	Gm16063	chr5	lncRNA	predicted gene 16063
novel_NIR_14414	chr5	119808125	119809298	+	119809122	119809298	5pMXE	ENSMUST00000121021.8	novel	0.67	2	1	2	1	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.60	3	2	3	2	y	1.00	2	0	2	0	y	ENSMUSG00000018604.19	Tbx3	chr5	protein_coding	T-box 3
novel_NIR_14415	chr5	120601290	120609595	-	120601290	120605370	5pMXE	ENSMUST00000132916.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	9	0	9	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000029596.14	Sdsl	chr5	protein_coding	serine dehydratase-like
novel_NIR_14416	chr5	120601290	120609595	-	120601290	120610786	A5SS	ENSMUST00000052258.14	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	0.24	9	28	9	28	y	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.36	4	7	4	7	y	-	-	-	-	-	-	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000029596.14	Sdsl	chr5	protein_coding	serine dehydratase-like
novel_NIR_14417	chr5	120601290	120610791	-	120601290	120605370	5pMXE	ENSMUST00000132916.2	novel	1.00	35	0	35	0	y	1.00	30	0	30	0	y	1.00	579	0	579	0	y	1.00	29	0	29	0	y	1.00	106	0	106	0	y	1.00	278	0	278	0	y	1.00	87	0	87	0	y	1.00	167	0	167	0	y	1.00	16	0	16	0	y	1.00	21	0	21	0	y	0.94	16	1	16	1	y	1.00	90	0	90	0	y	ENSMUSG00000029596.14	Sdsl	chr5	protein_coding	serine dehydratase-like
novel_NIR_14418	chr5	120601290	120610791	-	120601290	120610786	A5SS	ENSMUST00000052258.14	novel	1.00	35	0	35	0	y	0.88	30	4	30	4	y	0.95	579	28	579	28	y	0.83	29	6	29	6	y	0.99	106	1	106	1	y	0.98	278	7	278	7	y	1.00	87	0	87	0	y	0.94	167	10	167	10	y	0.94	16	1	16	1	y	0.91	21	2	21	2	y	1.00	16	0	16	0	y	0.97	90	3	90	3	y	ENSMUSG00000029596.14	Sdsl	chr5	protein_coding	serine dehydratase-like
novel_NIR_14419	chr5	120601290	120610791	-	120601290;120605563	120605339;120610791	ES	ENSMUST00000031594.13	novel	0.74	35	12.0	35	16;8	y	0.71	30	12.0	30	19;5	y	0.83	579	119.5	579	136;103	y	0.77	29	8.5	29	14;3	y	0.83	106	21.5	106	30;13	y	0.86	278	46.5	278	52;41	y	0.82	87	18.5	87	23;14	y	0.83	167	34.0	167	41;27	y	0.84	16	3.0	16	2;4	y	0.67	21	10.5	21	20;1	y	0.71	16	6.5	16	10;3	y	0.87	90	13.0	90	19;7	y	ENSMUSG00000029596.14	Sdsl	chr5	protein_coding	serine dehydratase-like
novel_NIR_14420	chr5	120605457	120610791	-	120605563	120610791	A3SS	ENSMUST00000031594.13	novel	0.00	0	8	0	8	n	0.17	1	5	1	5	n	0.15	18	103	18	103	y	0.25	1	3	1	3	n	0.00	0	13	0	13	n	0.18	9	41	9	41	y	0.18	3	14	3	14	y	0.04	1	27	1	27	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.00	0	7	0	7	n	ENSMUSG00000029596.14	Sdsl	chr5	protein_coding	serine dehydratase-like
novel_NIR_14421	chr5	120605467	120610791	-	120605563	120610791	A3SS	ENSMUST00000031594.13	novel	0.20	2	8	2	8	y	0.00	0	5	0	5	n	0.05	5	103	5	103	n	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.11	5	41	5	41	n	0.12	2	14	2	14	n	0.00	0	27	0	27	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	ENSMUSG00000029596.14	Sdsl	chr5	protein_coding	serine dehydratase-like
novel_NIR_14422	chr5	120614662	120614965	+	120614662	120616054	A3SS	ENSMUST00000201684.4	novel	1.00	10	0	10	0	n	1.00	3	0	3	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000029597.15	Sds	chr5	protein_coding	serine dehydratase
novel_NIR_14423	chr5	120614662	120615446	+	120614662	120616054	A3SS	ENSMUST00000201684.4	novel	1.00	8	0	8	0	y	1.00	13	0	13	0	y	1.00	12	0	12	0	y	1.00	6	0	6	0	y	1.00	14	0	14	0	y	1.00	9	0	9	0	y	1.00	7	0	7	0	y	1.00	8	0	8	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	8	0	8	0	y	1.00	15	0	15	0	y	ENSMUSG00000029597.15	Sds	chr5	protein_coding	serine dehydratase
novel_NIR_14424	chr5	120614662	120615450	+	120614662	120616054	A3SS	ENSMUST00000201684.4	novel	1.00	11	0	11	0	y	1.00	5	0	5	0	y	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	8	0	8	0	y	1.00	5	0	5	0	y	1.00	4	0	4	0	y	1.00	6	0	6	0	y	1.00	8	0	8	0	y	1.00	8	0	8	0	y	1.00	2	0	2	0	y	1.00	13	0	13	0	y	ENSMUSG00000029597.15	Sds	chr5	protein_coding	serine dehydratase
novel_NIR_14425	chr5	120614662;120615223	120614965;120617144	+	120614662;120616129	120616054;120617144	MXE	ENSMUST00000201684.4	novel	1.00	6.0	0.0	10;2	0;0	y	1.00	2.0	0.0	3;1	0;0	n	-	-	-	-	-	-	1.00	1.5	0.0	3;0	0;0	n	1.00	2.0	0.0	3;1	0;0	n	1.00	0.5	0.0	0;1	0;0	n	-	-	-	-	-	-	1.00	1.0	0.0	2;0	0;0	n	1.00	0.5	0.0	0;1	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1.5	0.0	3;0	0;0	n	ENSMUSG00000029597.15	Sds	chr5	protein_coding	serine dehydratase
novel_NIR_14426	chr5	120616137	120617144	+	120616129	120617144	A5SS	ENSMUST00000201684.4	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	12	0	12	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029597.15	Sds	chr5	protein_coding	serine dehydratase
novel_NIR_14427	chr5	120616761	120617144	+	120616129	120617144	A5SS	ENSMUST00000201684.4	novel	1.00	59	0	59	0	y	1.00	38	0	38	0	y	1.00	69	0	69	0	y	1.00	24	0	24	0	y	1.00	35	0	35	0	y	1.00	23	0	23	0	y	1.00	48	0	48	0	y	1.00	28	0	28	0	y	1.00	25	0	25	0	y	1.00	19	0	19	0	y	1.00	14	0	14	0	y	1.00	49	0	49	0	y	ENSMUSG00000029597.15	Sds	chr5	protein_coding	serine dehydratase
novel_NIR_14428	chr5	120658725	120658847	+	120658725	120658846	A3SS	ENSMUST00000068326.14	novel	0.10	8	74	8	74	n	0.19	16	69	16	69	y	0.02	1	52	1	52	n	0.12	15	115	15	115	n	0.17	22	110	22	110	y	0.12	8	59	8	59	n	0.21	24	88	24	88	y	0.18	10	46	10	46	y	0.21	16	62	16	62	y	0.18	21	98	21	98	y	0.16	11	57	11	57	y	0.12	18	131	18	131	n	ENSMUSG00000032754.15	Slc8b1	chr5	protein_coding	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1
novel_NIR_14429	chr5	120658951	120659039	+	120658951	120659819	A3SS	ENSMUST00000111889.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	10	0	10	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	11	0	11	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	ENSMUSG00000032754.15	Slc8b1	chr5	protein_coding	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1
novel_NIR_14430	chr5	120680032;120680286	120680255;120680520	-	120680032	120680520	cassetteExon	ENSMUST00000046426.10	novel	0.03	1.5	51	3;0	51	n	0.03	1.0	33	2;0	33	n	0.03	1.0	37	2;0	37	n	0.11	7.0	55	8;6	55	n	0.04	3.0	73	3;3	73	n	0.02	0.5	32	0;1	32	n	0.06	4.0	67	4;4	67	n	0.03	1.0	35	2;0	35	n	0.15	8.5	48	9;8	48	y	0.04	3.0	79	4;2	79	n	0.05	3.5	62	3;4	62	n	0.05	2.5	52	2;3	52	n	ENSMUSG00000032741.10	Tpcn1	chr5	protein_coding	two pore channel 1
novel_NIR_14431	chr5	120723493	120726553	-	120723493	120726568	A5SS	ENSMUST00000046426.10	novel	0.00	0	42	0	42	n	0.07	1	13	1	13	n	0.06	1	17	1	17	n	0.07	4	54	4	54	n	0.03	2	58	2	58	n	0.04	1	22	1	22	n	0.12	4	29	4	29	n	0.00	0	26	0	26	n	0.15	3	17	3	17	y	0.07	4	56	4	56	n	0.08	3	33	3	33	n	0.09	4	43	4	43	n	ENSMUSG00000032741.10	Tpcn1	chr5	protein_coding	two pore channel 1
novel_NIR_14432	chr5	120726081	120738093	+	120727159	120738093	5pMXE	ENSMUST00000069259.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000029601.14	Iqcd	chr5	protein_coding	IQ motif containing D
novel_NIR_14433	chr5	120742312	120744619	-	120742312	120743584	5pMXE	ENSMUST00000147596.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029600.11	Rita1	chr5	protein_coding	RBPJ interacting and tubulin associated 1
novel_NIR_14434	chr5	120742312	120744619	-	120742312	120749443	A5SS	ENSMUST00000156356.2	novel	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000029600.11	Rita1	chr5	protein_coding	RBPJ interacting and tubulin associated 1
novel_NIR_14435	chr5	120874249	120875538	-	120874249	120876360	A5SS	ENSMUST00000053909.13	novel	0.00	0	6	0	6	n	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.67	4	2	4	2	n	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	ENSMUSG00000032690.17	Oas2	chr5	protein_coding	2'-5' oligoadenylate synthetase 2
novel_NIR_14436	chr5	120874249;120875669	120875538;120876360	-	120874249	120876360	cassetteExon	ENSMUST00000053909.13	novel	0.00	0.0	6	0;0	6	n	0.09	0.5	5	1;0	5	n	0.09	0.5	5	0;1	5	n	0.60	3.0	2	4;2	2	y	1.00	2.0	0	4;0	0	n	1.00	0.5	0	0;1	0	n	0.00	0.0	4	0;0	4	n	0.00	0.0	2	0;0	2	n	0.00	0.0	4	0;0	4	n	0.00	0.0	1	0;0	1	n	0.00	0.0	6	0;0	6	n	0.00	0.0	2	0;0	2	n	ENSMUSG00000032690.17	Oas2	chr5	protein_coding	2'-5' oligoadenylate synthetase 2
novel_NIR_14437	chr5	120881348	120881957	-	120881348	120883742	A5SS	ENSMUST00000053909.13	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032690.17	Oas2	chr5	protein_coding	2'-5' oligoadenylate synthetase 2
novel_NIR_14438	chr5	120946313	120950499	-	120944470	120950499	A3SS	ENSMUST00000125547.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000001166.18	Oas1c	chr5	protein_coding	2'-5' oligoadenylate synthetase 1C
novel_NIR_14439	chr5	120946313	120950499	-	120946313;120947109	120946646;120950499	ES	ENSMUST00000117193.8	novel	0.00	0	1.0	0	2;0	n	0.00	0	0.5	0	1;0	n	0.00	0	1.0	0	2;0	n	0.00	0	1.5	0	3;0	n	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	0.00	0	1.0	0	1;1	n	0.00	0	1.0	0	2;0	n	0.00	0	0.5	0	1;0	n	0.80	2	0.5	2	1;0	y	0.00	0	0.5	0	1;0	n	ENSMUSG00000001166.18	Oas1c	chr5	protein_coding	2'-5' oligoadenylate synthetase 1C
novel_NIR_14440	chr5	120946313	120950499	-	120947109	120950499	A3SS&ES	ENSMUST00000130045.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000001166.18	Oas1c	chr5	protein_coding	2'-5' oligoadenylate synthetase 1C
novel_NIR_14441	chr5	120946733	120950499	-	120944470	120950499	A3SS	ENSMUST00000125547.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000001166.18	Oas1c	chr5	protein_coding	2'-5' oligoadenylate synthetase 1C
novel_NIR_14442	chr5	120946733	120950499	-	120947109	120950499	A3SS	ENSMUST00000117193.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000001166.18	Oas1c	chr5	protein_coding	2'-5' oligoadenylate synthetase 1C
novel_NIR_14443	chr5	120952767	120953440	+	120952767	120955678	A3SS	ENSMUST00000086377.9	novel	0.00	0	5	0	5	n	0.17	1	5	1	5	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.67	2	1	2	1	y	ENSMUSG00000029605.17	Oas1b	chr5	polymorphic_pseudogene	2'-5' oligoadenylate synthetase 1B
novel_NIR_14444	chr5	121035311	121036382	-	121035269	121036382	A3SS	ENSMUST00000080322.8	novel	0.00	0	16	0	16	n	0.25	3	9	3	9	y	0.00	0	19	0	19	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.07	1	13	1	13	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	ENSMUSG00000052776.11	Oas1a	chr5	protein_coding	2'-5' oligoadenylate synthetase 1A
novel_NIR_14445	chr5	121437706	121439385	+	121437706	121439805	A3SS	ENSMUST00000201669.4	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000042744.17	Hectd4	chr5	protein_coding	HECT domain E3 ubiquitin protein ligase 4
novel_NIR_14446	chr5	121437706	121439385	+	121437706	121439832	A3SS	ENSMUST00000042614.13	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.29	2	5	2	5	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000042744.17	Hectd4	chr5	protein_coding	HECT domain E3 ubiquitin protein ligase 4
novel_NIR_14447	chr5	121446448	121446541	+	121446448	121446556	A3SS	ENSMUST00000042614.13	novel	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	1.00	5	0	5	0	y	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.17	1	5	1	5	n	0.20	1	4	1	4	n	0.00	0	5	0	5	n	ENSMUSG00000042744.17	Hectd4	chr5	protein_coding	HECT domain E3 ubiquitin protein ligase 4
novel_NIR_14448	chr5	121453569	121455268	+	121453569	121455265	A3SS	ENSMUST00000042614.13	novel	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.20	2	8	2	8	y	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.25	1	3	1	3	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	ENSMUSG00000042744.17	Hectd4	chr5	protein_coding	HECT domain E3 ubiquitin protein ligase 4
novel_NIR_14449	chr5	121492028	121493629	+	121492028	121493626	A3SS	ENSMUST00000042614.13	novel	0.46	11	13	11	13	y	0.33	4	8	4	8	y	0.00	0	5	0	5	n	0.42	8	11	8	11	y	0.24	8	26	8	26	y	0.25	2	6	2	6	y	0.11	2	17	2	17	n	0.40	8	12	8	12	y	0.44	7	9	7	9	y	0.18	4	18	4	18	y	0.44	8	10	8	10	y	0.37	7	12	7	12	y	ENSMUSG00000042744.17	Hectd4	chr5	protein_coding	HECT domain E3 ubiquitin protein ligase 4
novel_NIR_14450	chr5	121522167	121522515	-	121522167	121522808	A5SS	ENSMUST00000155379.8	novel	0.64	7	4	7	4	y	0.33	1	2	1	2	n	0.00	0	6	0	6	n	0.17	1	5	1	5	n	0.31	4	9	4	9	y	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	7	0	7	n	0.33	2	4	2	4	y	0.11	1	8	1	8	n	0.00	0	3	0	3	n	0.67	4	2	4	2	y	ENSMUSG00000042726.15	Trafd1	chr5	protein_coding	TRAF type zinc finger domain containing 1
novel_NIR_14451	chr5	121522167	121522515	-	121522167	121522820	A5SS	ENSMUST00000146185.2	novel	1.00	7	0	7	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.67	4	2	4	2	y	-	-	-	-	-	-	0.25	2	6	2	6	y	-	-	-	-	-	-	0.50	2	2	2	2	y	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.44	4	5	4	5	y	ENSMUSG00000042726.15	Trafd1	chr5	protein_coding	TRAF type zinc finger domain containing 1
novel_NIR_14452	chr5	121522167	121522515	-	121522167	121523588	A5SS	ENSMUST00000042312.14	novel	0.54	7	6	7	6	y	0.17	1	5	1	5	n	0.00	0	15	0	15	n	0.12	1	7	1	7	n	0.27	4	11	4	11	y	0.00	0	9	0	9	n	0.29	2	5	2	5	y	0.00	0	1	0	1	n	0.14	2	12	2	12	n	0.05	1	18	1	18	n	0.00	0	5	0	5	n	0.40	4	6	4	6	y	ENSMUSG00000042726.15	Trafd1	chr5	protein_coding	TRAF type zinc finger domain containing 1
novel_NIR_14453	chr5	121522908	121523372	-	121522908	121523588	A5SS	ENSMUST00000155379.8	novel	0.40	2	3	2	3	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	0.67	2	1	2	1	y	0.60	3	2	3	2	y	-	-	-	-	-	-	0.33	2	4	2	4	y	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000042726.15	Trafd1	chr5	protein_coding	TRAF type zinc finger domain containing 1
novel_NIR_14454	chr5	121536125	121543554	+	121536125	121546260	A3SS	ENSMUST00000173895.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000042719.18	Naa25	chr5	protein_coding	N(alpha)-acetyltransferase 25, NatB auxiliary subunit
novel_NIR_14455	chr5	121543722	121545256	+	121536125	121545256	A5SS	ENSMUST00000042163.15	novel	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.05	1	19	1	19	n	0.00	0	7	0	7	n	0.00	0	16	0	16	n	0.00	0	3	0	3	n	0.08	1	11	1	11	n	0.67	2	1	2	1	y	0.00	0	8	0	8	n	0.00	0	16	0	16	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	ENSMUSG00000042719.18	Naa25	chr5	protein_coding	N(alpha)-acetyltransferase 25, NatB auxiliary subunit
novel_NIR_14456	chr5	121578161	121582225	+	121578366	121582225	A5SS	ENSMUST00000172908.2	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.17	1	5	1	5	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000042719.18	Naa25	chr5	protein_coding	N(alpha)-acetyltransferase 25, NatB auxiliary subunit
novel_NIR_14457	chr5	121585342	121588300	-	121585342	121587108	A5SS&ES	ENSMUST00000111802.4	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029616.10	Erp29	chr5	protein_coding	endoplasmic reticulum protein 29
novel_NIR_14458	chr5	121585358	121590254	-	121571155	121590254	A3SS	ENSMUST00000153758.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000029616.10	Erp29	chr5	protein_coding	endoplasmic reticulum protein 29
novel_NIR_14459	chr5	121585358	121590254	-	121583635	121590254	A3SS	ENSMUST00000052590.8	novel	0.29	2	5	2	5	y	0.00	0	5	0	5	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	ENSMUSG00000029616.10	Erp29	chr5	protein_coding	endoplasmic reticulum protein 29
novel_NIR_14460	chr5	121585358	121590254	-	121587226	121590254	A3SS&ES	ENSMUST00000111802.4	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000029616.10	Erp29	chr5	protein_coding	endoplasmic reticulum protein 29
novel_NIR_14461	chr5	121660482	121660894	-	121657446	121660894	A3SS	ENSMUST00000125946.8	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000105340.6	Gm42878	chr5	protein_coding	predicted gene 42878
novel_NIR_14462	chr5	121672493	121676456	-	121672493	121683228	A5SS	ENSMUST00000111782.8	novel	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029454.16	Mapkapk5	chr5	protein_coding	MAP kinase-activated protein kinase 5
novel_NIR_14463	chr5	121677310	121683228	-	121672493	121683228	A3SS	ENSMUST00000111782.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029454.16	Mapkapk5	chr5	protein_coding	MAP kinase-activated protein kinase 5
novel_NIR_14464	chr5	121708824	121709398	-	121708824	121713959	A5SS	ENSMUST00000199369.5	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	6	0	6	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.12	1	7	1	7	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029455.15	Aldh2	chr5	protein_coding	aldehyde dehydrogenase 2, mitochondrial
novel_NIR_14465	chr5	121711514	121713959	-	121708824	121713959	A3SS	ENSMUST00000199369.5	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	6	0	6	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	7	0	7	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	1	0	1	0	n	ENSMUSG00000029455.15	Aldh2	chr5	protein_coding	aldehyde dehydrogenase 2, mitochondrial
novel_NIR_14466	chr5	121752363	121756834	-	121752322	121756834	A3SS	ENSMUST00000041252.13	novel	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.30	3	7	3	7	y	0.13	2	13	2	13	n	0.25	2	6	2	6	y	0.00	0	5	0	5	n	0.15	2	11	2	11	y	0.00	0	7	0	7	n	0.11	1	8	1	8	n	0.20	3	12	3	12	y	0.00	0	9	0	9	n	0.00	0	11	0	11	n	ENSMUSG00000042647.14	Acad12	chr5	protein_coding	acyl-Coenzyme A dehydrogenase family, member 12
novel_NIR_14467	chr5	121777368	121783432	-	121777368;121780743	121780675;121783432	ES	ENSMUST00000031412.12	novel	0.00	0	21.5	0	23;20	n	0.07	1	13.5	1	9;18	n	0.00	0	8.0	0	6;10	n	0.00	0	24.0	0	16;32	n	0.00	0	21.5	0	22;21	n	0.00	0	11.5	0	11;12	n	0.00	0	24.0	0	23;25	n	0.00	0	13.0	0	13;13	n	0.00	0	20.0	0	20;20	n	0.00	0	34.0	0	38;30	n	0.15	3	17.0	3	19;15	y	0.04	1	26.0	1	25;27	n	ENSMUSG00000029456.13	Acad10	chr5	protein_coding	acyl-Coenzyme A dehydrogenase family, member 10
novel_NIR_14468	chr5	121777368	121783432	-	121780743	121783432	A3SS&ES	ENSMUST00000133775.8	novel	0.00	0	20	0	20	n	0.05	1	18	1	18	n	0.00	0	10	0	10	n	0.00	0	32	0	32	n	0.00	0	21	0	21	n	0.00	0	12	0	12	n	0.00	0	25	0	25	n	0.00	0	13	0	13	n	0.00	0	20	0	20	n	0.00	0	30	0	30	n	0.17	3	15	3	15	y	0.04	1	27	1	27	n	ENSMUSG00000029456.13	Acad10	chr5	protein_coding	acyl-Coenzyme A dehydrogenase family, member 10
novel_NIR_14469	chr5	121791886	121794077	-	121790167	121794077	A3SS	ENSMUST00000031412.12	novel	0.15	2	11	2	11	y	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.06	1	16	1	16	n	0.00	0	17	0	17	n	0.00	0	11	0	11	n	0.00	0	19	0	19	n	0.13	2	13	2	13	n	0.05	1	20	1	20	n	0.00	0	32	0	32	n	0.00	0	13	0	13	n	0.14	3	19	3	19	n	ENSMUSG00000029456.13	Acad10	chr5	protein_coding	acyl-Coenzyme A dehydrogenase family, member 10
novel_NIR_14470	chr5	121794276	121798164	-	121794276	121798356	A5SS	ENSMUST00000111770.2	novel	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	17	0	17	n	0.00	0	13	0	13	n	0.00	0	17	0	17	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.17	2	10	2	10	y	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	ENSMUSG00000029456.13	Acad10	chr5	protein_coding	acyl-Coenzyme A dehydrogenase family, member 10
novel_NIR_14471	chr5	121794276	121798164	-	121794317	121798164	A3SS	ENSMUST00000031412.12	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029456.13	Acad10	chr5	protein_coding	acyl-Coenzyme A dehydrogenase family, member 10
novel_NIR_14472	chr5	121800224	121801418	+	121800224	121801305	A3SS	ENSMUST00000195952.5	novel	0.00	0	7	0	7	n	0.44	7	9	7	9	y	0.58	7	5	7	5	y	0.33	7	14	7	14	y	0.35	7	13	7	13	y	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.23	3	10	3	10	y	0.00	0	21	0	21	n	0.50	17	17	17	17	y	0.20	4	16	4	16	y	0.10	2	19	2	19	n	ENSMUSG00000029458.15	Brap	chr5	protein_coding	BRCA1 associated protein
novel_NIR_14473	chr5	121800224	121801418	+	121800224	121803162	A3SS	ENSMUST00000140996.6	novel	0.00	0	7	0	7	n	0.64	7	4	7	4	y	0.64	7	4	7	4	y	0.47	7	8	7	8	n	0.41	7	10	7	10	n	-	-	-	-	-	-	0.00	0	10	0	10	n	0.27	3	8	3	8	y	0.00	0	10	0	10	n	0.55	17	14	17	14	n	0.27	4	11	4	11	y	0.22	2	7	2	7	y	ENSMUSG00000029458.15	Brap	chr5	protein_coding	BRCA1 associated protein
novel_NIR_14474	chr5	121800224	121801423	+	121800224	121801305	A3SS	ENSMUST00000195952.5	novel	0.00	0	7	0	7	n	0.10	1	9	1	9	n	0.29	2	5	2	5	y	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	21	0	21	n	0.00	0	17	0	17	n	0.00	0	16	0	16	n	0.00	0	19	0	19	n	ENSMUSG00000029458.15	Brap	chr5	protein_coding	BRCA1 associated protein
novel_NIR_14475	chr5	121800224	121801423	+	121800224	121803162	A3SS	ENSMUST00000140996.6	novel	0.00	0	7	0	7	n	0.20	1	4	1	4	n	0.33	2	4	2	4	y	0.00	0	8	0	8	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	ENSMUSG00000029458.15	Brap	chr5	protein_coding	BRCA1 associated protein
novel_NIR_14476	chr5	121801554	121810148	+	121804780	121810148	5pMXE	ENSMUST00000127703.3	novel	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000029458.15	Brap	chr5	protein_coding	BRCA1 associated protein
novel_NIR_14477	chr5	122062978	122157377	-	122062978	122140294	5pMXE	ENSMUST00000134326.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	ENSMUSG00000042589.19	Cux2	chr5	protein_coding	cut-like homeobox 2
novel_NIR_14478	chr5	122062978	122157377	-	122062978	122181833	A5SS	ENSMUST00000111752.10	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	ENSMUSG00000042589.19	Cux2	chr5	protein_coding	cut-like homeobox 2
novel_NIR_14479	chr5	122062978	122157377	-	122062978	122185634	A5SS	ENSMUST00000125267.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	ENSMUSG00000042589.19	Cux2	chr5	protein_coding	cut-like homeobox 2
novel_NIR_14480	chr5	122062978	122157377	-	122062978	122188079	A5SS	ENSMUST00000154139.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	ENSMUSG00000042589.19	Cux2	chr5	protein_coding	cut-like homeobox 2
novel_NIR_14481	chr5	122384737	122385983	-	122384634	122385983	A3SS	ENSMUST00000176677.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000038593.19	Tctn1	chr5	protein_coding	tectonic family member 1
novel_NIR_14482	chr5	122384737	122385983	-	122384697	122385983	A3SS	ENSMUST00000141281.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	0.67	2	1	2	1	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	ENSMUSG00000038593.19	Tctn1	chr5	protein_coding	tectonic family member 1
novel_NIR_14483	chr5	122384737	122385983	-	122385680	122385983	A3SS&ES	ENSMUST00000111738.8	novel	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.22	2	7	2	7	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.25	1	3	1	3	n	0.50	2	2	2	2	y	0.33	1	2	1	2	n	-	-	-	-	-	-	ENSMUSG00000038593.19	Tctn1	chr5	protein_coding	tectonic family member 1
novel_NIR_14484	chr5	122399590	122402197	-	122399590	122402201	A5SS	ENSMUST00000111738.8	novel	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.50	2	2	2	2	y	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	ENSMUSG00000038593.19	Tctn1	chr5	protein_coding	tectonic family member 1
novel_NIR_14485	chr5	122463272	122463414	-	122462287	122463414	A3SS	ENSMUST00000117263.8	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.43	3	4	3	4	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000038569.14	Rad9b	chr5	protein_coding	RAD9 checkpoint clamp component B
novel_NIR_14486	chr5	122469760	122477795	-	122464042	122477795	A3SS	ENSMUST00000149600.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000038569.14	Rad9b	chr5	protein_coding	RAD9 checkpoint clamp component B
novel_NIR_14487	chr5	122489436	122490607	-	122489436	122489624	A5SS&ES	ENSMUST00000117263.8	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	ENSMUSG00000038569.14	Rad9b	chr5	protein_coding	RAD9 checkpoint clamp component B
novel_NIR_14488	chr5	122489436	122490607	-	122489436;122489773	122489624;122490607	ES	ENSMUST00000049009.7	novel	0.00	0	3.0	0	4;2	n	0.00	0	2.5	0	2;3	n	0.00	0	1.5	0	2;1	n	0.67	2	1.0	2	1;1	y	0.00	0	5.5	0	5;6	n	0.00	0	0.5	0	0;1	n	0.00	0	3.5	0	4;3	n	-	-	-	-	-	-	0.00	0	0.5	0	0;1	n	0.00	0	4.5	0	5;4	n	0.00	0	4.5	0	4;5	n	0.00	0	3.5	0	4;3	n	ENSMUSG00000038569.14	Rad9b	chr5	protein_coding	RAD9 checkpoint clamp component B
novel_NIR_14489	chr5	122493991	122498076	+	122492566	122498076	A5SS	ENSMUST00000145821.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000029462.19	Vps29	chr5	protein_coding	VPS29 retromer complex component
novel_NIR_14490	chr5	122493991	122498076	+	122494868	122498076	A5SS&ES	ENSMUST00000118830.8	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.40	2	3	2	3	n	0.30	3	7	3	7	y	0.43	3	4	3	4	y	0.00	0	3	0	3	n	ENSMUSG00000029462.19	Vps29	chr5	protein_coding	VPS29 retromer complex component
novel_NIR_14491	chr5	122493991	122498076	+	122497760	122498076	A5SS&ES	ENSMUST00000154686.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	n	0.75	3	1	3	1	y	0.75	3	1	3	1	y	0.00	0	2	0	2	n	ENSMUSG00000029462.19	Vps29	chr5	protein_coding	VPS29 retromer complex component
novel_NIR_14492	chr5	122494083	122498076	+	122492566	122498076	A5SS	ENSMUST00000145821.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029462.19	Vps29	chr5	protein_coding	VPS29 retromer complex component
novel_NIR_14493	chr5	122494083	122498076	+	122494868	122498076	A5SS&ES	ENSMUST00000118830.8	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.25	2	6	2	6	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	ENSMUSG00000029462.19	Vps29	chr5	protein_coding	VPS29 retromer complex component
novel_NIR_14494	chr5	122494083	122498076	+	122497760	122498076	A5SS&ES	ENSMUST00000154686.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000029462.19	Vps29	chr5	protein_coding	VPS29 retromer complex component
novel_NIR_14495	chr5	122539308	122539710	+	122538525	122539710	A5SS	ENSMUST00000111716.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029465.15	Arpc3	chr5	protein_coding	actin related protein 2/3 complex, subunit 3
novel_NIR_14496	chr5	122539308	122539710	+	122538531	122539710	A5SS	ENSMUST00000111713.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029465.15	Arpc3	chr5	protein_coding	actin related protein 2/3 complex, subunit 3
novel_NIR_14497	chr5	122579503	122580879	+	122579503	122579686	3pMXE	ENSMUST00000154074.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029466.12	Anapc7	chr5	protein_coding	anaphase promoting complex subunit 7
novel_NIR_14498	chr5	122594033	122595366	-	122592367	122595366	A3SS	ENSMUST00000177974.8	novel	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.50	7	7	7	7	y	0.00	0	12	0	12	n	0.01	1	148	1	148	n	0.29	2	5	2	5	y	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.25	3	9	3	9	y	0.14	1	6	1	6	n	ENSMUSG00000029467.16	Atp2a2	chr5	protein_coding	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
novel_NIR_14499	chr5	122594038	122595366	-	122592367	122595366	A3SS	ENSMUST00000177974.8	novel	0.68	17	8	17	8	y	0.65	15	8	15	8	y	0.79	38	10	38	10	y	0.60	15	10	15	10	y	0.76	22	7	22	7	y	0.20	3	12	3	12	y	0.12	20	148	20	148	n	0.80	20	5	20	5	y	0.60	9	6	9	6	y	0.48	15	16	15	16	y	0.47	8	9	8	9	y	0.68	13	6	13	6	y	ENSMUSG00000029467.16	Atp2a2	chr5	protein_coding	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
novel_NIR_14500	chr5	122594574	122595366	-	122592367	122595366	A3SS	ENSMUST00000177974.8	novel	0.38	5	8	5	8	y	0.47	7	8	7	8	y	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	148	0	148	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	ENSMUSG00000029467.16	Atp2a2	chr5	protein_coding	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
novel_NIR_14501	chr5	122865354	122865430	+	122865354	122865808	A3SS	ENSMUST00000139631.8	novel	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000029470.16	P2rx4	chr5	protein_coding	purinergic receptor P2X, ligand-gated ion channel 4
novel_NIR_14502	chr5	122865524	122865808	+	122865354	122865808	A5SS	ENSMUST00000139631.8	novel	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	1.00	2	0	2	0	y	0.00	0	6	0	6	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000029470.16	P2rx4	chr5	protein_coding	purinergic receptor P2X, ligand-gated ion channel 4
novel_NIR_14503	chr5	122870152	122875051	-	122872308	122875051	A3SS	ENSMUST00000111668.8	novel	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000029471.14	Camkk2	chr5	protein_coding	calcium/calmodulin-dependent protein kinase kinase 2, beta
novel_NIR_14504	chr5	122888114	122889415	-	122888114	122891762	A5SS	ENSMUST00000111668.8	novel	0.00	0	29	0	29	n	0.00	0	15	0	15	n	0.00	0	32	0	32	n	0.00	0	13	0	13	n	0.00	0	23	0	23	n	0.25	2	6	2	6	y	0.00	0	20	0	20	n	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.00	0	15	0	15	n	0.00	0	18	0	18	n	0.00	0	19	0	19	n	ENSMUSG00000029471.14	Camkk2	chr5	protein_coding	calcium/calmodulin-dependent protein kinase kinase 2, beta
novel_NIR_14505	chr5	122902365	122909116	-	122902365	122907962	A5SS&ES	ENSMUST00000199599.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000029471.14	Camkk2	chr5	protein_coding	calcium/calmodulin-dependent protein kinase kinase 2, beta
novel_NIR_14506	chr5	122902365	122909116	-	122902365	122917315	A5SS	ENSMUST00000111668.8	novel	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.13	2	13	2	13	n	0.00	0	14	0	14	n	0.00	0	15	0	15	n	0.00	0	4	0	4	n	0.22	2	7	2	7	y	-	-	-	-	-	-	0.00	0	6	0	6	n	0.22	2	7	2	7	y	0.00	0	5	0	5	n	0.00	0	3	0	3	n	ENSMUSG00000029471.14	Camkk2	chr5	protein_coding	calcium/calmodulin-dependent protein kinase kinase 2, beta
novel_NIR_14507	chr5	122908046	122909116	-	122908046	122917315	A5SS	ENSMUST00000199599.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000029471.14	Camkk2	chr5	protein_coding	calcium/calmodulin-dependent protein kinase kinase 2, beta
novel_NIR_14508	chr5	122929997	122930971	-	122929997	122932480	A5SS	ENSMUST00000199191.2	novel	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.12	1	7	1	7	n	0.33	1	2	1	2	n	ENSMUSG00000029472.14	Anapc5	chr5	protein_coding	anaphase-promoting complex subunit 5
novel_NIR_14509	chr5	122929997	122937402	-	122929997	122932480	5pMXE	ENSMUST00000199191.2	novel	0.00	0	7	0	7	n	0.33	1	2	1	2	n	0.75	3	1	3	1	y	0.00	0	1	0	1	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	7	0	7	n	0.50	2	2	2	2	y	ENSMUSG00000029472.14	Anapc5	chr5	protein_coding	anaphase-promoting complex subunit 5
novel_NIR_14510	chr5	122940282	122940618	-	122940282	122944308	A5SS	ENSMUST00000200148.5	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.83	5	1	5	1	y	ENSMUSG00000029472.14	Anapc5	chr5	protein_coding	anaphase-promoting complex subunit 5
novel_NIR_14511	chr5	123272464	123272687	-	123272493	123272687	A3SS	ENSMUST00000159072.2	novel	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.14	1	6	1	6	n	0.00	0	18	0	18	n	0.13	2	13	2	13	n	0.00	0	6	0	6	n	0.00	0	28	0	28	n	0.40	4	6	4	6	y	0.18	6	27	6	27	y	0.03	1	38	1	38	n	0.25	4	12	4	12	y	0.00	0	33	0	33	n	ENSMUSG00000090086.8	AI480526	chr5	lncRNA	expressed sequence AI480526
novel_NIR_14512	chr5	123272490	123272687	-	123272493	123272687	A3SS	ENSMUST00000159072.2	novel	0.23	3	10	3	10	y	0.41	9	13	9	13	y	0.25	2	6	2	6	y	0.00	0	18	0	18	n	0.19	3	13	3	13	y	0.33	3	6	3	6	y	0.10	3	28	3	28	n	0.00	0	6	0	6	n	0.18	6	27	6	27	y	0.07	3	38	3	38	n	0.20	3	12	3	12	y	0.13	5	33	5	33	n	ENSMUSG00000090086.8	AI480526	chr5	lncRNA	expressed sequence AI480526
novel_NIR_14513	chr5	123272493	123272677	-	123272493	123272687	A5SS	ENSMUST00000159072.2	novel	0.33	5	10	5	10	y	0.19	3	13	3	13	y	0.00	0	6	0	6	n	0.05	1	18	1	18	n	0.07	1	13	1	13	n	0.00	0	6	0	6	n	0.20	7	28	7	28	y	0.25	2	6	2	6	y	0.07	2	27	2	27	n	0.12	5	38	5	38	n	0.29	5	12	5	12	y	0.00	0	33	0	33	n	ENSMUSG00000090086.8	AI480526	chr5	lncRNA	expressed sequence AI480526
novel_NIR_14514	chr5	123272493	123272677	-	123272493	123276018	A5SS	ENSMUST00000160227.8	novel	1.00	5	0	5	0	y	0.50	3	3	3	3	y	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	1.00	7	0	7	0	y	1.00	2	0	2	0	y	0.67	2	1	2	1	n	1.00	5	0	5	0	y	1.00	5	0	5	0	y	0.00	0	2	0	2	n	ENSMUSG00000090086.8	AI480526	chr5	lncRNA	expressed sequence AI480526
novel_NIR_14515	chr5	123272780	123272884	-	123272780	123276018	A5SS	ENSMUST00000159072.2	novel	0.12	3	23	3	23	n	0.08	2	24	2	24	n	0.14	2	12	2	12	n	0.04	1	26	1	26	n	0.06	1	15	1	15	n	0.00	0	7	0	7	n	0.18	7	31	7	31	y	0.27	3	8	3	8	y	0.00	0	47	0	47	n	0.08	3	36	3	36	n	0.00	0	29	0	29	n	0.12	5	36	5	36	n	ENSMUSG00000090086.8	AI480526	chr5	lncRNA	expressed sequence AI480526
novel_NIR_14516	chr5	123272955	123273252	-	123272955	123276018	A5SS	ENSMUST00000160321.8	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.43	3	4	3	4	y	0.00	0	1	0	1	n	0.14	2	12	2	12	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	ENSMUSG00000090086.8	AI480526	chr5	lncRNA	expressed sequence AI480526
novel_NIR_14517	chr5	123274457	123281006	+	123280517	123281006	5pMXE	ENSMUST00000100731.9	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000038384.17	Setd1b	chr5	protein_coding	SET domain containing 1B
novel_NIR_14518	chr5	123278036	123278464	-	123278036	123278850	A5SS	ENSMUST00000160321.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	ENSMUSG00000090086.8	AI480526	chr5	lncRNA	expressed sequence AI480526
novel_NIR_14519	chr5	123278036	123279086	-	123278036	123278850	A5SS&ES	ENSMUST00000160321.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.57	4	3	4	3	y	1.00	2	0	2	0	y	ENSMUSG00000090086.8	AI480526	chr5	lncRNA	expressed sequence AI480526
novel_NIR_14520	chr5	123278036	123279272	-	123278036	123278850	A5SS&ES	ENSMUST00000160255.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000090086.8	AI480526	chr5	lncRNA	expressed sequence AI480526
novel_NIR_14521	chr5	123278036	123279417	-	123278036	123278850	A5SS&ES	ENSMUST00000160255.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.40	2	3	2	3	y	-	-	-	-	-	-	ENSMUSG00000090086.8	AI480526	chr5	lncRNA	expressed sequence AI480526
novel_NIR_14522	chr5	123310349	123312441	-	123310349	123310798	5pMXE	ENSMUST00000155092.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	74	0	74	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.95	54	3	54	3	y	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000029445.14	Hpd	chr5	protein_coding	4-hydroxyphenylpyruvic acid dioxygenase
novel_NIR_14523	chr5	123319986	123320311	-	123319986	123320087	5pMXE	ENSMUST00000124110.2	novel	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	1.00	3	0	3	0	y	ENSMUSG00000029445.14	Hpd	chr5	protein_coding	4-hydroxyphenylpyruvic acid dioxygenase
novel_NIR_14524	chr5	123319986	123320542	-	123319986	123320087	5pMXE	ENSMUST00000124110.2	novel	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000029445.14	Hpd	chr5	protein_coding	4-hydroxyphenylpyruvic acid dioxygenase
novel_NIR_14525	chr5	123319986	123320561	-	123319986	123320087	5pMXE	ENSMUST00000124110.2	novel	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.60	3	2	3	2	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.40	2	3	2	3	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000029445.14	Hpd	chr5	protein_coding	4-hydroxyphenylpyruvic acid dioxygenase
novel_NIR_14526	chr5	123319986	123320737	-	123319986	123320087	5pMXE	ENSMUST00000124110.2	novel	-	-	-	-	-	-	0.00	0	5	0	5	n	1.00	2	0	2	0	y	0.82	9	2	9	2	y	1.00	5	0	5	0	y	0.00	0	1	0	1	n	0.40	2	3	2	3	y	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.57	4	3	4	3	y	0.50	1	1	1	1	n	1.00	4	0	4	0	y	ENSMUSG00000029445.14	Hpd	chr5	protein_coding	4-hydroxyphenylpyruvic acid dioxygenase
novel_NIR_14527	chr5	123326325	123326727	+	123326325	123372657	A3SS	ENSMUST00000199260.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029440.16	Psmd9	chr5	protein_coding	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9
novel_NIR_14528	chr5	123472643	123482989	-	123472643	123479570	5pMXE	ENSMUST00000137257.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000087336.3	Gm15860	chr5	lncRNA	predicted gene 15860
novel_NIR_14529	chr5	123472643	123482989	-	123472643	123482328	5pMXE	ENSMUST00000197262.2	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000087336.3	Gm15860	chr5	lncRNA	predicted gene 15860
novel_NIR_14530	chr5	123481838	123482328	-	123472643	123482328	A3SS	ENSMUST00000197262.2	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	3	0	3	0	y	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000087336.3	Gm15860	chr5	lncRNA	predicted gene 15860
novel_NIR_14531	chr5	123482005	123482328	-	123472643	123482328	A3SS	ENSMUST00000197262.2	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000087336.3	Gm15860	chr5	lncRNA	predicted gene 15860
novel_NIR_14532	chr5	123507517	123525279	+	123507517	123509081	3pMXE	ENSMUST00000120593.5	novel	0.25	2	6	2	6	y	0.00	0	7	0	7	n	0.00	0	18	0	18	n	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.00	0	13	0	13	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	17	0	17	n	ENSMUSG00000029438.10	Bcl7a	chr5	protein_coding	B cell CLL/lymphoma 7A
novel_NIR_14533	chr5	123578961	123580358	+	123578961	123580345	A3SS	ENSMUST00000111596.8	novel	0.18	2	9	2	9	y	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	ENSMUSG00000038342.16	Mlxip	chr5	protein_coding	MLX interacting protein
novel_NIR_14534	chr5	123661438	123662134	-	123661438	123662123	A5SS	ENSMUST00000197682.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000114278.3	Gm49027	chr5	protein_coding	predicted gene, 49027
novel_NIR_14535	chr5	123716191	123717175	-	123716191	123716287	5pMXE	ENSMUST00000198833.2	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000049550.18	Clip1	chr5	protein_coding	CAP-GLY domain containing linker protein 1
novel_NIR_14536	chr5	123769037	123773237	-	123769232	123773237	A3SS	ENSMUST00000137363.8	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.20	2	8	2	8	y	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	ENSMUSG00000049550.18	Clip1	chr5	protein_coding	CAP-GLY domain containing linker protein 1
novel_NIR_14537	chr5	123769232	123777019	-	123769232	123773237	A5SS&ES	ENSMUST00000137363.8	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.58	11	8	11	8	y	0.17	1	5	1	5	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	ENSMUSG00000049550.18	Clip1	chr5	protein_coding	CAP-GLY domain containing linker protein 1
novel_NIR_14538	chr5	123769232	123777019	-	123769232	123778557	A5SS	ENSMUST00000111564.8	novel	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.05	2	41	2	41	n	0.00	0	18	0	18	n	0.00	0	23	0	23	n	0.00	0	25	0	25	n	0.32	11	23	11	23	y	0.05	1	19	1	19	n	0.00	0	19	0	19	n	0.00	0	33	0	33	n	0.00	0	16	0	16	n	0.00	0	26	0	26	n	ENSMUSG00000049550.18	Clip1	chr5	protein_coding	CAP-GLY domain containing linker protein 1
novel_NIR_14539	chr5	123769232	123777019	-	123769232;123773341	123773237;123777019	ES	ENSMUST00000031382.14	novel	0.00	0	1.0	0	2;0	n	0.00	0	0.5	0	1;0	n	0.50	2	2.0	2	3;1	y	0.00	0	3.0	0	6;0	n	0.00	0	3.0	0	3;3	n	0.00	0	2.5	0	4;1	n	0.61	11	7.0	11	8;6	y	0.29	1	2.5	1	5;0	n	0.00	0	1.0	0	1;1	n	0.00	0	2.5	0	5;0	n	0.00	0	2.5	0	5;0	n	0.00	0	3.5	0	5;2	n	ENSMUSG00000049550.18	Clip1	chr5	protein_coding	CAP-GLY domain containing linker protein 1
novel_NIR_14540	chr5	123794149	123808951	-	123794149	123804715	5pMXE	ENSMUST00000149410.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	8	0	8	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000049550.18	Clip1	chr5	protein_coding	CAP-GLY domain containing linker protein 1
novel_NIR_14541	chr5	123794149	123808951	-	123794149	123822315	A5SS	ENSMUST00000111564.8	novel	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	28	0	28	n	0.00	0	13	0	13	n	0.00	0	19	0	19	n	0.00	0	17	0	17	n	0.28	8	21	8	21	y	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	17	0	17	n	ENSMUSG00000049550.18	Clip1	chr5	protein_coding	CAP-GLY domain containing linker protein 1
novel_NIR_14542	chr5	123794149	123809052	-	123794149	123804715	5pMXE	ENSMUST00000149410.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000049550.18	Clip1	chr5	protein_coding	CAP-GLY domain containing linker protein 1
novel_NIR_14543	chr5	123794149	123809052	-	123794149	123822315	A5SS	ENSMUST00000111564.8	novel	0.00	0	9	0	9	n	0.20	1	4	1	4	n	0.00	0	28	0	28	n	0.07	1	13	1	13	n	0.00	0	19	0	19	n	0.00	0	17	0	17	n	0.16	4	21	4	21	y	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	17	0	17	n	ENSMUSG00000049550.18	Clip1	chr5	protein_coding	CAP-GLY domain containing linker protein 1
novel_NIR_14544	chr5	124046277	124060243	+	124046277	124046447	3pMXE	ENSMUST00000168899.2	novel	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	ENSMUSG00000023106.16	Denr	chr5	protein_coding	density-regulated protein
novel_NIR_14545	chr5	124082368	124084255	+	124082368	124084417	A3SS	ENSMUST00000094320.10	novel	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.12	1	7	1	7	n	0.50	2	2	2	2	y	0.00	0	7	0	7	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000061882.13	Ccdc62	chr5	protein_coding	coiled-coil domain containing 62
novel_NIR_14546	chr5	124228325	124230213	-	124228325	124233709	A5SS	ENSMUST00000031354.11	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	1.00	2	0	2	0	y	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.11	1	8	1	8	n	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000029408.14	Abcb9	chr5	protein_coding	ATP-binding cassette, sub-family B (MDR/TAP), member 9
novel_NIR_14547	chr5	124252255	124252470	+	124251591	124252470	A5SS	ENSMUST00000199457.5	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.33	1	2	1	2	n	ENSMUSG00000023707.14	Ogfod2	chr5	protein_coding	2-oxoglutarate and iron-dependent oxygenase domain containing 2
novel_NIR_14548	chr5	124255966	124256052	+	124255966	124256113	A3SS	ENSMUST00000196401.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029404.16	Arl6ip4	chr5	protein_coding	ADP-ribosylation factor-like 6 interacting protein 4
novel_NIR_14549	chr5	124267425	124268270	-	124267465	124268270	A3SS	ENSMUST00000086123.11	novel	0.12	2	15	2	15	n	0.00	0	17	0	17	n	0.13	2	13	2	13	n	0.16	5	26	5	26	y	0.00	0	26	0	26	n	0.14	1	6	1	6	n	0.00	0	9	0	9	n	0.08	1	11	1	11	n	0.00	0	22	0	22	n	0.11	3	25	3	25	n	0.00	0	20	0	20	n	0.05	1	20	1	20	n	ENSMUSG00000029406.16	Pitpnm2	chr5	protein_coding	phosphatidylinositol transfer protein, membrane-associated 2
novel_NIR_14550	chr5	124621804	124628186	+	124621309	124628186	A5SS	ENSMUST00000031349.9	novel	0.17	2	10	2	10	y	0.00	0	16	0	16	n	0.00	0	17	0	17	n	0.00	0	16	0	16	n	0.00	0	18	0	18	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	18	0	18	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	ENSMUSG00000029402.9	Snrnp35	chr5	protein_coding	small nuclear ribonucleoprotein 35 (U11/U12)
novel_NIR_14551	chr5	124621804	124628186	+	124621345	124628186	A5SS	ENSMUST00000136567.2	novel	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029402.9	Snrnp35	chr5	protein_coding	small nuclear ribonucleoprotein 35 (U11/U12)
novel_NIR_14552	chr5	124621804	124628186	+	124621716	124628186	A5SS	ENSMUST00000111453.2	novel	0.25	2	6	2	6	y	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	ENSMUSG00000029402.9	Snrnp35	chr5	protein_coding	small nuclear ribonucleoprotein 35 (U11/U12)
novel_NIR_14553	chr5	124633985	124634246	-	124631907	124634246	A3SS	ENSMUST00000199125.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.47	7	8	7	8	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029392.13	Rilpl1	chr5	protein_coding	Rab interacting lysosomal protein-like 1
novel_NIR_14554	chr5	124634336	124639903	-	124631907	124639903	A3SS	ENSMUST00000062153.12	novel	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	16	0	16	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.25	2	6	2	6	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	14	0	14	n	ENSMUSG00000029392.13	Rilpl1	chr5	protein_coding	Rab interacting lysosomal protein-like 1
novel_NIR_14555	chr5	124634336	124639903	-	124634333	124639903	A3SS	ENSMUST00000199125.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.15	2	11	2	11	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029392.13	Rilpl1	chr5	protein_coding	Rab interacting lysosomal protein-like 1
novel_NIR_14556	chr5	124641796	124644290	-	124641796	124641933	5pMXE	ENSMUST00000200202.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029392.13	Rilpl1	chr5	protein_coding	Rab interacting lysosomal protein-like 1
novel_NIR_14557	chr5	124675028	124681035	+	124679495	124681035	5pMXE	ENSMUST00000124529.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	ENSMUSG00000029390.14	Tmed2	chr5	protein_coding	transmembrane p24 trafficking protein 2
novel_NIR_14558	chr5	124680820	124681035	+	124679495	124681035	A5SS	ENSMUST00000124529.8	novel	0.50	1	1	1	1	n	1.00	3	0	3	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	0.80	4	1	4	1	y	1.00	2	0	2	0	y	0.50	1	1	1	1	n	0.00	0	1	0	1	n	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.50	3	3	3	3	y	ENSMUSG00000029390.14	Tmed2	chr5	protein_coding	transmembrane p24 trafficking protein 2
novel_NIR_14559	chr5	124692656	124692741	+	124692656	124692734	A3SS	ENSMUST00000071057.14	novel	0.18	2	9	2	9	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	ENSMUSG00000029389.18	Ddx55	chr5	protein_coding	DEAD box helicase 55
novel_NIR_14560	chr5	124698863	124699919	+	124698863	124699969	A3SS	ENSMUST00000071057.14	novel	0.08	1	12	1	12	n	0.07	1	14	1	14	n	0.00	0	17	0	17	n	0.00	0	8	0	8	n	0.07	1	13	1	13	n	0.00	0	8	0	8	n	0.15	2	11	2	11	y	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.06	1	15	1	15	n	0.00	0	7	0	7	n	0.12	2	15	2	15	n	ENSMUSG00000029389.18	Ddx55	chr5	protein_coding	DEAD box helicase 55
novel_NIR_14561	chr5	124797086	124801355	+	124797086	124798767	3pMXE	ENSMUST00000197161.2	novel	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038023.13	Atp6v0a2	chr5	protein_coding	ATPase, H+ transporting, lysosomal V0 subunit A2
novel_NIR_14562	chr5	125102868	125103342	-	125102868	125103752	A5SS	ENSMUST00000134819.2	novel	0.11	1	8	1	8	n	0.33	2	4	2	4	y	0.09	1	10	1	10	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.08	1	11	1	11	n	ENSMUSG00000029478.17	Ncor2	chr5	protein_coding	nuclear receptor co-repressor 2
novel_NIR_14563	chr5	125107287	125107750	-	125107290	125107750	A3SS	ENSMUST00000125053.8	novel	0.00	0	12	0	12	n	0.00	0	23	0	23	n	0.03	1	36	1	36	n	0.00	0	24	0	24	n	0.00	0	38	0	38	n	0.00	0	18	0	18	n	0.00	0	21	0	21	n	0.07	1	14	1	14	n	0.12	3	23	3	23	n	0.03	1	30	1	30	n	0.00	0	21	0	21	n	0.17	6	29	6	29	y	ENSMUSG00000029478.17	Ncor2	chr5	protein_coding	nuclear receptor co-repressor 2
novel_NIR_14564	chr5	125116114	125118860	-	125116117	125118860	A3SS	ENSMUST00000125053.8	novel	0.09	1	10	1	10	n	0.60	3	2	3	2	y	0.06	2	31	2	31	n	0.00	0	17	0	17	n	0.25	5	15	5	15	y	0.00	0	10	0	10	n	0.05	1	21	1	21	n	0.00	0	6	0	6	n	0.00	0	21	0	21	n	0.00	0	28	0	28	n	0.00	0	18	0	18	n	0.20	5	20	5	20	y	ENSMUSG00000029478.17	Ncor2	chr5	protein_coding	nuclear receptor co-repressor 2
novel_NIR_14565	chr5	125146141	125151952	-	125146141	125156072	A5SS	ENSMUST00000111402.9	novel	0.10	1	9	1	9	n	0.00	0	6	0	6	n	0.00	0	23	0	23	n	0.00	0	25	0	25	n	0.00	0	22	0	22	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.07	1	14	1	14	n	0.00	0	23	0	23	n	0.00	0	10	0	10	n	0.11	1	8	1	8	n	0.17	4	19	4	19	y	ENSMUSG00000029478.17	Ncor2	chr5	protein_coding	nuclear receptor co-repressor 2
novel_NIR_14566	chr5	125158248	125158452	-	125158248	125161945	A5SS	ENSMUST00000111402.9	novel	0.00	0	14	0	14	n	0.08	1	11	1	11	n	0.33	9	18	9	18	y	0.05	1	19	1	19	n	0.00	0	26	0	26	n	0.11	2	17	2	17	n	0.00	0	17	0	17	n	0.00	0	13	0	13	n	0.08	1	12	1	12	n	0.00	0	24	0	24	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	ENSMUSG00000029478.17	Ncor2	chr5	protein_coding	nuclear receptor co-repressor 2
novel_NIR_14567	chr5	125183370	125186957	-	125183376	125186957	A3SS	ENSMUST00000111402.9	novel	0.20	2	8	2	8	y	0.06	1	15	1	15	n	0.17	2	10	2	10	y	0.04	1	22	1	22	n	0.04	1	27	1	27	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	21	0	21	n	ENSMUSG00000029478.17	Ncor2	chr5	protein_coding	nuclear receptor co-repressor 2
novel_NIR_14568	chr5	125196673	125199684	-	125196673	125201834	A5SS	ENSMUST00000111402.9	novel	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	24	0	24	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.18	2	9	2	9	y	0.00	0	23	0	23	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	ENSMUSG00000029478.17	Ncor2	chr5	protein_coding	nuclear receptor co-repressor 2
novel_NIR_14569	chr5	125196673	125199684	-	125196673	125230671	A5SS	ENSMUST00000111393.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000029478.17	Ncor2	chr5	protein_coding	nuclear receptor co-repressor 2
novel_NIR_14570	chr5	125202044	125217897	-	125202044	125230671	A5SS	ENSMUST00000111398.8	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.00	0	15	0	15	n	0.50	1	1	1	1	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	ENSMUSG00000029478.17	Ncor2	chr5	protein_coding	nuclear receptor co-repressor 2
novel_NIR_14571	chr5	125202044	125217897	-	125202044	125256061	A5SS	ENSMUST00000111402.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029478.17	Ncor2	chr5	protein_coding	nuclear receptor co-repressor 2
novel_NIR_14572	chr5	125381416	125403224	-	125381416	125393540	5pMXE	ENSMUST00000133624.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000037936.16	Scarb1	chr5	protein_coding	scavenger receptor class B, member 1
novel_NIR_14573	chr5	125381416	125403224	-	125381416	125403098	A5SS	ENSMUST00000156532.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.60	6	4	6	4	y	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.33	4	8	4	8	y	0.00	0	1	0	1	n	0.50	3	3	3	3	y	ENSMUSG00000037936.16	Scarb1	chr5	protein_coding	scavenger receptor class B, member 1
novel_NIR_14574	chr5	125381416	125403224	-	125381416	125416908	A5SS	ENSMUST00000137783.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000037936.16	Scarb1	chr5	protein_coding	scavenger receptor class B, member 1
novel_NIR_14575	chr5	125465328	125466561	-	125465328	125466164	5pMXE	ENSMUST00000108707.3	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.80	4	1	4	1	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	ENSMUSG00000008348.10	Ubc	chr5	protein_coding	ubiquitin C
novel_NIR_14576	chr5	125465328	125466561	-	125465328	125466974	A5SS	ENSMUST00000156249.2	novel	0.29	2	5	2	5	y	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.36	5	9	5	9	y	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.25	2	6	2	6	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.40	4	6	4	6	y	0.38	3	5	3	5	y	0.14	1	6	1	6	n	ENSMUSG00000008348.10	Ubc	chr5	protein_coding	ubiquitin C
novel_NIR_14577	chr5	125465328	125470149	-	125465328	125466164	5pMXE	ENSMUST00000108707.3	novel	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	4	0	4	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	0.67	2	1	2	1	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000008348.10	Ubc	chr5	protein_coding	ubiquitin C
novel_NIR_14578	chr5	125465328	125470149	-	125465328	125466974	5pMXE	ENSMUST00000156249.2	novel	0.17	1	5	1	5	n	0.44	4	5	4	5	y	0.43	3	4	3	4	y	0.18	2	9	2	9	y	0.25	2	6	2	6	y	0.57	4	3	4	3	y	0.40	4	6	4	6	y	0.62	5	3	5	3	y	0.00	0	5	0	5	n	0.25	2	6	2	6	y	0.29	2	5	2	5	y	0.00	0	6	0	6	n	ENSMUSG00000008348.10	Ubc	chr5	protein_coding	ubiquitin C
novel_NIR_14579	chr5	125508830	125511018	-	125508830	125510999	A5SS	ENSMUST00000169485.6	novel	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.25	2	6	2	6	y	ENSMUSG00000029480.14	Dhx37	chr5	protein_coding	DEAH (Asp-Glu-Ala-His) box polypeptide 37
novel_NIR_14580	chr5	125589802	125590171	+	125589802	125590148	A3SS	ENSMUST00000199978.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	11	0	11	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	9	0	9	0	y	1.00	9	0	9	0	y	ENSMUSG00000029482.5	Aacs	chr5	protein_coding	acetoacetyl-CoA synthetase
novel_NIR_14581	chr5	127686125	127709832	-	127686125	127686271	5pMXE	ENSMUST00000152727.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029416.18	Slc15a4	chr5	protein_coding	solute carrier family 15, member 4
novel_NIR_14582	chr5	127686125	127709832	-	127686125	127709898	A5SS	ENSMUST00000144603.6	novel	0.00	0	6	0	6	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.11	1	8	1	8	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	10	0	10	n	0.50	2	2	2	2	y	0.00	0	5	0	5	n	0.00	0	9	0	9	n	ENSMUSG00000029416.18	Slc15a4	chr5	protein_coding	solute carrier family 15, member 4
novel_NIR_14583	chr5	127686125	127710238	-	127686125	127686271	5pMXE	ENSMUST00000152727.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029416.18	Slc15a4	chr5	protein_coding	solute carrier family 15, member 4
novel_NIR_14584	chr5	127686125	127710238	-	127686125	127693879	5pMXE	ENSMUST00000031367.15	novel	0.00	0	36	0	36	n	0.00	0	24	0	24	n	0.20	3	12	3	12	y	0.00	0	36	0	36	n	0.03	1	31	1	31	n	0.00	0	6	0	6	n	0.09	3	29	3	29	n	0.00	0	19	0	19	n	0.00	0	20	0	20	n	0.00	0	34	0	34	n	0.00	0	17	0	17	n	0.00	0	30	0	30	n	ENSMUSG00000029416.18	Slc15a4	chr5	protein_coding	solute carrier family 15, member 4
novel_NIR_14585	chr5	127686125	127710238	-	127686125	127709898	5pMXE	ENSMUST00000144603.6	novel	0.00	0	6	0	6	n	0.00	0	3	0	3	n	1.00	3	0	3	0	y	0.00	0	9	0	9	n	0.11	1	8	1	8	n	-	-	-	-	-	-	0.60	3	2	3	2	y	-	-	-	-	-	-	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	ENSMUSG00000029416.18	Slc15a4	chr5	protein_coding	solute carrier family 15, member 4
novel_NIR_14586	chr5	127741140	127741716	+	127740900	127741716	A5SS	ENSMUST00000137157.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000049971.18	Glt1d1	chr5	protein_coding	glycosyltransferase 1 domain containing 1
novel_NIR_14587	chr5	127768174;127768925	127768800;127771291	+	127768174	127771291	cassetteExon	ENSMUST00000118139.3	novel	0.41	14.5	21	13;16	21	y	0.08	2.5	28	4;1	28	n	0.33	7.0	14	0;14	14	n	0.18	6.5	30	2;11	30	y	0.29	12.0	29	11;13	29	y	0.33	4.0	8	2;6	8	y	0.14	5.0	30	6;4	30	n	0.00	0.0	10	0;0	10	n	0.13	3.5	23	3;4	23	n	0.15	7.5	44	9;6	44	y	0.18	4.0	18	5;3	18	y	0.22	11.5	40	12;11	40	y	ENSMUSG00000049971.18	Glt1d1	chr5	protein_coding	glycosyltransferase 1 domain containing 1
novel_NIR_14588	chr5	127768925	127771291	+	127768174	127771291	A5SS	ENSMUST00000118139.3	novel	0.43	16	21	16	21	n	0.03	1	28	1	28	n	0.50	14	14	14	14	y	0.27	11	30	11	30	n	0.31	13	29	13	29	n	0.43	6	8	6	8	n	0.12	4	30	4	30	n	0.00	0	10	0	10	n	0.15	4	23	4	23	n	0.12	6	44	6	44	n	0.14	3	18	3	18	n	0.22	11	40	11	40	n	ENSMUSG00000049971.18	Glt1d1	chr5	protein_coding	glycosyltransferase 1 domain containing 1
novel_NIR_14589	chr5	129199654	129205511	+	129199654	129205918	A3SS	ENSMUST00000056617.14	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000044017.17	Adgrd1	chr5	protein_coding	adhesion G protein-coupled receptor D1
novel_NIR_14590	chr5	129578660	129579544	+	129578660	129581047	A3SS	ENSMUST00000053737.9	novel	0.04	1	24	1	24	n	0.29	4	10	4	10	y	0.00	0	27	0	27	n	0.00	0	27	0	27	n	0.00	0	22	0	22	n	0.00	0	11	0	11	n	0.00	0	18	0	18	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.08	2	24	2	24	n	0.10	1	9	1	9	n	0.00	0	22	0	22	n	ENSMUSG00000029439.15	Sfswap	chr5	protein_coding	splicing factor SWAP
novel_NIR_14591	chr5	129631772	129636581	+	129631772	129636514	3pMXE	ENSMUST00000199394.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029439.15	Sfswap	chr5	protein_coding	splicing factor SWAP
novel_NIR_14592	chr5	129631772	129636581	+	129631772	129636533	A3SS	ENSMUST00000198266.5	novel	0.00	0	8	0	8	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029439.15	Sfswap	chr5	protein_coding	splicing factor SWAP
novel_NIR_14593	chr5	129792892	129793791	+	129792922	129793791	A5SS	ENSMUST00000118420.8	novel	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.00	0	25	0	25	n	0.00	0	18	0	18	n	0.00	0	26	0	26	n	0.00	0	7	0	7	n	0.00	0	20	0	20	n	0.00	0	13	0	13	n	0.26	5	14	5	14	y	0.00	0	24	0	24	n	0.00	0	14	0	14	n	0.00	0	14	0	14	n	ENSMUSG00000034211.15	Mrps17	chr5	protein_coding	mitochondrial ribosomal protein S17
novel_NIR_14594	chr5	129792892	129793791	+	129792958	129793791	A5SS	ENSMUST00000138812.2	novel	0.00	0	16	0	16	n	0.00	0	17	0	17	n	0.00	0	21	0	21	n	0.00	0	22	0	22	n	0.00	0	20	0	20	n	0.00	0	14	0	14	n	0.00	0	22	0	22	n	0.00	0	11	0	11	n	0.22	5	18	5	18	y	0.00	0	21	0	21	n	0.00	0	16	0	16	n	0.00	0	29	0	29	n	ENSMUSG00000034211.15	Mrps17	chr5	protein_coding	mitochondrial ribosomal protein S17
novel_NIR_14595	chr5	129792892	129793791	+	129792974	129793791	A5SS	ENSMUST00000119576.8	novel	0.00	0	24	0	24	n	0.00	0	17	0	17	n	0.00	0	38	0	38	n	0.00	0	25	0	25	n	0.00	0	39	0	39	n	0.00	0	10	0	10	n	0.00	0	38	0	38	n	0.00	0	26	0	26	n	0.16	5	26	5	26	y	0.00	0	34	0	34	n	0.00	0	18	0	18	n	0.00	0	26	0	26	n	ENSMUSG00000034211.15	Mrps17	chr5	protein_coding	mitochondrial ribosomal protein S17
novel_NIR_14596	chr5	129792892	129793791	+	129792976	129793791	A5SS	ENSMUST00000154358.6	novel	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	5	0	5	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000034211.15	Mrps17	chr5	protein_coding	mitochondrial ribosomal protein S17
novel_NIR_14597	chr5	129792892	129793791	+	129793005	129793791	A5SS	ENSMUST00000119604.8	novel	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.56	5	4	5	4	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	ENSMUSG00000034211.15	Mrps17	chr5	protein_coding	mitochondrial ribosomal protein S17
novel_NIR_14598	chr5	129792958	129793801	+	129792958	129793791	A3SS	ENSMUST00000138812.2	novel	0.00	0	16	0	16	n	0.00	0	17	0	17	n	0.00	0	21	0	21	n	0.00	0	22	0	22	n	0.00	0	20	0	20	n	0.00	0	14	0	14	n	0.15	4	22	4	22	y	0.00	0	11	0	11	n	0.00	0	18	0	18	n	0.00	0	21	0	21	n	0.00	0	16	0	16	n	0.00	0	29	0	29	n	ENSMUSG00000034211.15	Mrps17	chr5	protein_coding	mitochondrial ribosomal protein S17
novel_NIR_14599	chr5	129793675	129793791	+	129792922	129793791	A5SS	ENSMUST00000118420.8	novel	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.00	0	25	0	25	n	0.00	0	18	0	18	n	0.07	2	26	2	26	n	0.00	0	7	0	7	n	0.00	0	20	0	20	n	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.00	0	24	0	24	n	0.18	3	14	3	14	y	0.00	0	14	0	14	n	ENSMUSG00000034211.15	Mrps17	chr5	protein_coding	mitochondrial ribosomal protein S17
novel_NIR_14600	chr5	129793675	129793791	+	129792958	129793791	A5SS	ENSMUST00000138812.2	novel	0.00	0	16	0	16	n	0.00	0	17	0	17	n	0.00	0	21	0	21	n	0.00	0	22	0	22	n	0.09	2	20	2	20	n	0.00	0	14	0	14	n	0.00	0	22	0	22	n	0.00	0	11	0	11	n	0.00	0	18	0	18	n	0.00	0	21	0	21	n	0.16	3	16	3	16	y	0.00	0	29	0	29	n	ENSMUSG00000034211.15	Mrps17	chr5	protein_coding	mitochondrial ribosomal protein S17
novel_NIR_14601	chr5	129793675	129793791	+	129792976	129793791	A5SS	ENSMUST00000154358.6	novel	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.67	2	1	2	1	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.60	3	2	3	2	y	0.00	0	5	0	5	n	ENSMUSG00000034211.15	Mrps17	chr5	protein_coding	mitochondrial ribosomal protein S17
novel_NIR_14602	chr5	129793675	129793791	+	129793005	129793791	A5SS	ENSMUST00000119604.8	novel	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.25	2	6	2	6	y	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.38	3	5	3	5	y	0.00	0	4	0	4	n	ENSMUSG00000034211.15	Mrps17	chr5	protein_coding	mitochondrial ribosomal protein S17
novel_NIR_14603	chr5	129825097	129826638	+	129825097	129831906	A3SS	ENSMUST00000195946.5	novel	1.00	5	0	5	0	y	1.00	2	0	2	0	y	0.00	0	2	0	2	n	1.00	5	0	5	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	7	0	7	0	n	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000029432.13	Nipsnap2	chr5	protein_coding	nipsnap homolog 2
novel_NIR_14604	chr5	129825097;129826698	129826638;129830290	+	129825097	129830290	cassetteExon	ENSMUST00000086046.10	novel	0.23	4.5	15	5;4	15	y	0.23	3.5	12	2;5	12	y	0.00	0.0	38	0;0	38	n	0.14	3.5	22	5;2	22	n	0.11	4.5	37	4;5	37	n	0.00	0.0	26	0;0	26	n	0.01	1.0	109	2;0	109	n	0.06	2.0	30	4;0	30	n	0.17	2.5	12	2;3	12	y	0.26	8.5	24	7;10	24	y	0.00	0.0	14	0;0	14	n	0.04	1.0	27	2;0	27	n	ENSMUSG00000029432.13	Nipsnap2	chr5	protein_coding	nipsnap homolog 2
novel_NIR_14605	chr5	129855907	129856086	-	129854005	129856086	A3SS	ENSMUST00000136507.4	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.25	1	3	1	3	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	ENSMUSG00000029446.15	Psph	chr5	protein_coding	phosphoserine phosphatase
novel_NIR_14606	chr5	129856183	129856426	-	129856312	129856426	A3SS	ENSMUST00000031399.13	novel	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.10	2	18	2	18	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.25	2	6	2	6	y	0.00	0	11	0	11	n	0.12	1	7	1	7	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	ENSMUSG00000029446.15	Psph	chr5	protein_coding	phosphoserine phosphatase
novel_NIR_14607	chr5	129887136	129888367	+	129887136	129891480	A3SS	ENSMUST00000122826.5	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025538.16	Sumf2	chr5	protein_coding	sulfatase modifying factor 2
novel_NIR_14608	chr5	129894597	129894758	-	129893941	129894758	A3SS	ENSMUST00000026617.13	novel	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025537.13	Phkg1	chr5	protein_coding	phosphorylase kinase gamma 1
novel_NIR_14609	chr5	129911411	129912775	-	129911420	129912775	A3SS	ENSMUST00000094280.4	novel	0.00	0	527	0	527	n	0.00	0	658	0	658	n	0.00	0	652	0	652	n	0.18	158	721	158	721	y	0.00	0	742	0	742	n	0.00	0	372	0	372	n	0.21	269	988	269	988	y	0.00	0	356	0	356	n	0.00	0	610	0	610	n	0.00	0	1046	0	1046	n	0.00	0	858	0	858	n	0.00	0	866	0	866	n	ENSMUSG00000070493.4	Chchd2	chr5	protein_coding	coiled-coil-helix-coiled-coil-helix domain containing 2
novel_NIR_14610	chr5	129927011	129927844	+	129924693	129927844	A5SS	ENSMUST00000077320.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000034173.14	Zbed5	chr5	protein_coding	zinc finger, BED type containing 5
novel_NIR_14611	chr5	129928273	129929195	+	129928273	129929186	A3SS	ENSMUST00000041466.14	novel	0.47	34	38	34	38	y	0.00	0	22	0	22	n	0.00	0	34	0	34	n	0.00	0	21	0	21	n	0.00	0	31	0	31	n	0.00	0	25	0	25	n	0.00	0	33	0	33	n	0.00	0	15	0	15	n	0.00	0	14	0	14	n	0.00	0	47	0	47	n	0.00	0	31	0	31	n	0.00	0	27	0	27	n	ENSMUSG00000034173.14	Zbed5	chr5	protein_coding	zinc finger, BED type containing 5
novel_NIR_14612	chr5	130004440	130005830	+	129971206	130005830	A5SS	ENSMUST00000202298.4	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000066735.9	Vkorc1l1	chr5	protein_coding	vitamin K epoxide reductase complex, subunit 1-like 1
novel_NIR_14613	chr5	130042251	130042804	-	130042374	130042804	A3SS	ENSMUST00000159096.8	novel	0.40	4	6	4	6	y	0.86	6	1	6	1	y	0.50	1	1	1	1	n	0.33	3	6	3	6	y	0.33	2	4	2	4	y	1.00	2	0	2	0	y	0.18	2	9	2	9	y	0.00	0	1	0	1	n	0.50	4	4	4	4	y	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.40	4	6	4	6	y	ENSMUSG00000025533.16	Asl	chr5	protein_coding	argininosuccinate lyase
novel_NIR_14614	chr5	130042310	130042804	-	130042374	130042804	A3SS	ENSMUST00000159096.8	novel	0.33	3	6	3	6	y	0.75	3	1	3	1	y	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.50	3	3	3	3	y	0.00	0	3	0	3	n	0.33	3	6	3	6	y	ENSMUSG00000025533.16	Asl	chr5	protein_coding	argininosuccinate lyase
novel_NIR_14615	chr5	130042313	130042804	-	130042374	130042804	A3SS	ENSMUST00000159096.8	novel	0.40	4	6	4	6	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.50	4	4	4	4	y	0.62	5	3	5	3	y	0.40	2	3	2	3	y	0.00	0	6	0	6	n	ENSMUSG00000025533.16	Asl	chr5	protein_coding	argininosuccinate lyase
novel_NIR_14616	chr5	130045191	130047151	-	130045669	130047151	3pMXE	ENSMUST00000160557.2	novel	0.15	2	11	2	11	y	0.43	3	4	3	4	y	0.00	0	6	0	6	n	0.25	5	15	5	15	y	0.07	1	13	1	13	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.36	4	7	4	7	y	0.00	0	7	0	7	n	0.00	0	13	0	13	n	ENSMUSG00000025533.16	Asl	chr5	protein_coding	argininosuccinate lyase
novel_NIR_14617	chr5	130045665	130047151	-	130045669	130047151	A3SS	ENSMUST00000160557.2	novel	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.25	2	6	2	6	y	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	ENSMUSG00000025533.16	Asl	chr5	protein_coding	argininosuccinate lyase
novel_NIR_14618	chr5	130048589	130052883	-	130052539	130052883	A3SS&ES	ENSMUST00000161884.2	novel	1.00	19	0	19	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.79	11	3	11	3	y	-	-	-	-	-	-	ENSMUSG00000025533.16	Asl	chr5	protein_coding	argininosuccinate lyase
novel_NIR_14619	chr5	130048697	130048896	-	130048697	130052477	A5SS	ENSMUST00000161884.2	novel	0.00	0	5	0	5	n	0.50	3	3	3	3	y	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.60	3	2	3	2	y	0.22	2	7	2	7	y	0.60	3	2	3	2	y	0.33	2	4	2	4	y	ENSMUSG00000025533.16	Asl	chr5	protein_coding	argininosuccinate lyase
novel_NIR_14620	chr5	130052574	130052883	-	130052539	130052883	A3SS	ENSMUST00000161884.2	novel	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000025533.16	Asl	chr5	protein_coding	argininosuccinate lyase
novel_NIR_14621	chr5	130058169	130063753	+	130058335	130063753	5pMXE	ENSMUST00000156729.2	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.33	2	4	2	4	y	0.00	0	13	0	13	n	-	-	-	-	-	-	0.00	0	6	0	6	n	ENSMUSG00000025532.14	Crcp	chr5	protein_coding	calcitonin gene-related peptide-receptor component protein
novel_NIR_14622	chr5	130063084	130063753	+	130058335	130063753	A5SS	ENSMUST00000156729.2	novel	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.10	1	9	1	9	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	-	-	-	-	-	-	0.00	0	6	0	6	n	ENSMUSG00000025532.14	Crcp	chr5	protein_coding	calcitonin gene-related peptide-receptor component protein
novel_NIR_14623	chr5	130066759	130070154	+	130066759	130077767	A3SS	ENSMUST00000202163.4	novel	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000025532.14	Crcp	chr5	protein_coding	calcitonin gene-related peptide-receptor component protein
novel_NIR_14624	chr5	130066759	130070154	+	130066759	130088546	A3SS	ENSMUST00000202756.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000025532.14	Crcp	chr5	protein_coding	calcitonin gene-related peptide-receptor component protein
novel_NIR_14625	chr5	130071141	130088546	+	130066759	130088546	A5SS	ENSMUST00000202756.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	ENSMUSG00000025532.14	Crcp	chr5	protein_coding	calcitonin gene-related peptide-receptor component protein
novel_NIR_14626	chr5	130105753	130130431	+	130122557	130130431	5pMXE	ENSMUST00000142838.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034118.16	Tpst1	chr5	protein_coding	protein-tyrosine sulfotransferase 1
novel_NIR_14627	chr5	130251858	130258290	+	130246161	130258290	A5SS	ENSMUST00000202612.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000053094.16	Tmem248	chr5	protein_coding	transmembrane protein 248
novel_NIR_14628	chr5	130251858	130258290	+	130248756	130258290	A5SS	ENSMUST00000200802.4	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000053094.16	Tmem248	chr5	protein_coding	transmembrane protein 248
novel_NIR_14629	chr5	130251858	130258290	+	130248760	130258290	A5SS	ENSMUST00000202305.4	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000053094.16	Tmem248	chr5	protein_coding	transmembrane protein 248
novel_NIR_14630	chr5	130282845	130284053	-	130282845	130284051	A5SS	ENSMUST00000201598.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000025337.11	Sbds	chr5	protein_coding	SBDS ribosome maturation factor
novel_NIR_14631	chr5	134128990	134147787	+	134128990	134154711	A3SS	ENSMUST00000016088.9	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.29	2	5	2	5	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000015944.10	Castor2	chr5	protein_coding	cytosolic arginine sensor for mTORC1 subunit 2
novel_NIR_14632	chr5	134183048	134186430	-	134184752	134186430	3pMXE	ENSMUST00000126113.8	novel	0.00	0	28	0	28	n	0.02	1	43	1	43	n	0.03	2	64	2	64	n	0.05	2	41	2	41	n	0.16	10	54	10	54	y	0.00	0	35	0	35	n	0.05	3	62	3	62	n	0.00	0	23	0	23	n	0.02	1	41	1	41	n	0.02	1	54	1	54	n	0.00	0	61	0	61	n	0.06	3	49	3	49	n	ENSMUSG00000061979.9	Rcc1l	chr5	protein_coding	reculator of chromosome condensation 1 like
novel_NIR_14633	chr5	134198185	134200678	-	134198185	134200686	A5SS	ENSMUST00000076228.3	novel	0.00	0	43	0	43	n	0.05	2	39	2	39	n	0.00	0	35	0	35	n	0.00	0	52	0	52	n	0.04	2	46	2	46	n	0.00	0	38	0	38	n	0.03	1	32	1	32	n	0.04	1	27	1	27	n	0.18	9	41	9	41	y	0.04	3	65	3	65	n	0.00	0	45	0	45	n	0.02	1	40	1	40	n	ENSMUSG00000061979.9	Rcc1l	chr5	protein_coding	reculator of chromosome condensation 1 like
novel_NIR_14634	chr5	134220116	134221415	+	134220116	134221492	A3SS	ENSMUST00000016086.10	novel	0.33	3	6	3	6	y	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.50	1	1	1	1	n	0.25	1	3	1	3	n	0.67	2	1	2	1	y	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	ENSMUSG00000015942.10	Gtf2ird2	chr5	protein_coding	GTF2I repeat domain containing 2
novel_NIR_14635	chr5	134232189	134237721	+	134232189;134235668	134235612;134237721	ES	ENSMUST00000123941.8	novel	0.00	0	2.0	0	2;2	n	0.00	0	1.5	0	2;1	n	0.33	2	4.0	2	5;3	y	0.44	2	2.5	2	4;1	y	0.56	5	4.0	5	4;4	y	0.00	0	2.0	0	3;1	n	0.50	4	4.0	4	3;5	y	0.00	0	1.0	0	1;1	n	0.57	2	1.5	2	2;1	y	0.67	6	3.0	6	3;3	y	0.00	0	0.5	0	0;1	n	0.67	2	1.0	2	1;1	y	ENSMUSG00000015942.10	Gtf2ird2	chr5	protein_coding	GTF2I repeat domain containing 2
novel_NIR_14636	chr5	134232189	134237721	+	134235668	134237721	5pMXE	ENSMUST00000128842.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.67	2	1	2	1	y	0.56	5	4	5	4	y	0.00	0	1	0	1	n	0.44	4	5	4	5	y	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.67	6	3	6	3	y	0.00	0	1	0	1	n	0.67	2	1	2	1	y	ENSMUSG00000015942.10	Gtf2ird2	chr5	protein_coding	GTF2I repeat domain containing 2
novel_NIR_14637	chr5	134305285	134308291	-	134295510	134308291	A3SS	ENSMUST00000173888.8	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.33	3	6	3	6	y	0.40	4	6	4	6	y	0.44	4	5	4	5	y	0.57	4	3	4	3	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.67	2	1	2	1	y	0.75	3	1	3	1	y	0.00	0	8	0	8	n	ENSMUSG00000060261.17	Gtf2i	chr5	protein_coding	general transcription factor II I
novel_NIR_14638	chr5	134305285	134308291	-	134305282	134308291	A3SS	ENSMUST00000059042.15	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	1.00	3	0	3	0	y	0.80	4	1	4	1	y	1.00	4	0	4	0	y	0.80	4	1	4	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	0.00	0	1	0	1	n	ENSMUSG00000060261.17	Gtf2i	chr5	protein_coding	general transcription factor II I
novel_NIR_14639	chr5	134334241	134335386	-	134324467	134335386	A3SS	ENSMUST00000174188.8	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	ENSMUSG00000060261.17	Gtf2i	chr5	protein_coding	general transcription factor II I
novel_NIR_14640	chr5	134386747	134387842	-	134386750	134387842	A3SS	ENSMUST00000111244.5	novel	0.00	0	19	0	19	n	0.09	5	51	5	51	n	0.08	4	45	4	45	n	0.14	3	18	3	18	n	0.09	3	29	3	29	n	0.04	1	27	1	27	n	0.00	0	45	0	45	n	0.27	6	16	6	16	y	0.06	2	33	2	33	n	0.09	5	51	5	51	n	0.00	0	40	0	40	n	0.23	7	23	7	23	y	ENSMUSG00000023079.15	Gtf2ird1	chr5	protein_coding	general transcription factor II I repeat domain-containing 1
novel_NIR_14641	chr5	134432670	134433510	-	134432675	134433510	A3SS	ENSMUST00000111244.5	novel	0.09	1	10	1	10	n	0.00	0	8	0	8	n	0.04	2	44	2	44	n	0.05	1	19	1	19	n	0.25	3	9	3	9	y	0.00	0	18	0	18	n	0.00	0	23	0	23	n	0.00	0	14	0	14	n	0.00	0	15	0	15	n	0.00	0	19	0	19	n	0.00	0	13	0	13	n	0.00	0	35	0	35	n	ENSMUSG00000023079.15	Gtf2ird1	chr5	protein_coding	general transcription factor II I repeat domain-containing 1
novel_NIR_14642	chr5	134438164	134439836	-	134438164	134439808	A5SS	ENSMUST00000111244.5	novel	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.10	4	37	4	37	n	0.21	4	15	4	15	y	0.06	2	30	2	30	n	0.00	0	16	0	16	n	0.07	1	14	1	14	n	0.05	1	21	1	21	n	0.00	0	24	0	24	n	0.10	3	27	3	27	n	0.00	0	10	0	10	n	0.00	0	17	0	17	n	ENSMUSG00000023079.15	Gtf2ird1	chr5	protein_coding	general transcription factor II I repeat domain-containing 1
novel_NIR_14643	chr5	134526801	134526944	-	134525239	134526944	A3SS	ENSMUST00000036999.10	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000063146.12	Clip2	chr5	protein_coding	CAP-GLY domain containing linker protein 2
novel_NIR_14644	chr5	134611737	134615752	+	134610474	134615752	A5SS	ENSMUST00000202761.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023104.10	Rfc2	chr5	protein_coding	replication factor C (activator 1) 2
novel_NIR_14645	chr5	134637784	134648550	-	134637784	134643743	5pMXE	ENSMUST00000077636.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000040751.13	Lat2	chr5	protein_coding	linker for activation of T cells family, member 2
novel_NIR_14646	chr5	134961302	134961463	+	134961302	134961476	A3SS	ENSMUST00000111218.8	novel	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.71	5	2	5	2	y	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.14	1	6	1	6	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.00	0	6	0	6	n	ENSMUSG00000040557.15	Mettl27	chr5	protein_coding	methyltransferase like 27
novel_NIR_14647	chr5	135038086	135038836	+	135038069	135038836	A5SS	ENSMUST00000111216.8	novel	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.25	2	6	2	6	y	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000040532.15	Abhd11	chr5	protein_coding	abhydrolase domain containing 11
novel_NIR_14648	chr5	135039914	135040068	+	135039914	135040095	A3SS	ENSMUST00000148831.3	novel	0.00	0	2	0	2	n	0.50	3	3	3	3	y	0.00	0	6	0	6	n	0.50	1	1	1	1	n	0.33	3	6	3	6	y	0.00	0	4	0	4	n	0.43	3	4	3	4	y	0.50	1	1	1	1	n	0.33	2	4	2	4	y	0.45	5	6	5	6	y	0.00	0	5	0	5	n	1.00	2	0	2	0	y	ENSMUSG00000040532.15	Abhd11	chr5	protein_coding	abhydrolase domain containing 11
novel_NIR_14649	chr5	135118914	135135953	+	135118914	135142481	A3SS	ENSMUST00000202431.4	novel	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.50	3	3	3	3	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	4	4	4	4	y	0.00	0	2	0	2	n	0.43	6	8	6	8	y	0.31	4	9	4	9	y	0.00	0	8	0	8	n	0.00	0	4	0	4	n	ENSMUSG00000005373.14	Mlxipl	chr5	protein_coding	MLX interacting protein-like
novel_NIR_14650	chr5	135161715	135161968	+	135161715	135161930	A3SS	ENSMUST00000142385.8	novel	0.25	2	6	2	6	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	ENSMUSG00000005373.14	Mlxipl	chr5	protein_coding	MLX interacting protein-like
novel_NIR_14651	chr5	135162030	135162109	+	135162030	135162106	A3SS	ENSMUST00000142385.8	novel	0.14	15	90	15	90	n	0.16	14	72	14	72	y	0.23	13	44	13	44	y	0.15	19	105	19	105	y	0.17	17	84	17	84	y	0.09	2	21	2	21	n	0.20	20	82	20	82	y	0.11	4	31	4	31	n	0.14	18	107	18	107	n	0.19	36	150	36	150	y	0.15	22	126	22	126	y	0.17	25	122	25	122	y	ENSMUSG00000005373.14	Mlxipl	chr5	protein_coding	MLX interacting protein-like
novel_NIR_14652	chr5	135162727	135162823	+	135162727	135162801	A3SS	ENSMUST00000128691.8	novel	0.36	5	9	5	9	y	0.62	13	8	13	8	y	0.08	1	11	1	11	n	0.61	11	7	11	7	y	0.54	14	12	14	12	y	0.00	0	3	0	3	n	0.71	12	5	12	5	y	0.86	12	2	12	2	y	0.53	10	9	10	9	y	0.33	8	16	8	16	y	0.11	1	8	1	8	n	0.55	12	10	12	10	y	ENSMUSG00000005373.14	Mlxipl	chr5	protein_coding	MLX interacting protein-like
novel_NIR_14653	chr5	135162727	135162823	+	135162727	135162808	A3SS	ENSMUST00000153519.8	novel	0.17	5	24	5	24	y	0.24	13	41	13	41	y	0.06	1	16	1	16	n	0.20	11	43	11	43	y	0.23	14	48	14	48	y	0.00	0	9	0	9	n	0.25	12	36	12	36	y	0.52	12	11	12	11	y	0.19	10	44	10	44	y	0.11	8	66	8	66	n	0.02	1	52	1	52	n	0.20	12	49	12	49	y	ENSMUSG00000005373.14	Mlxipl	chr5	protein_coding	MLX interacting protein-like
novel_NIR_14654	chr5	135162727	135162872	+	135162727	135162801	A3SS	ENSMUST00000128691.8	novel	0.00	0	9	0	9	n	0.27	3	8	3	8	y	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.62	8	5	8	5	y	0.00	0	2	0	2	n	0.44	7	9	7	9	y	0.00	0	16	0	16	n	0.43	6	8	6	8	y	0.47	9	10	9	10	y	ENSMUSG00000005373.14	Mlxipl	chr5	protein_coding	MLX interacting protein-like
novel_NIR_14655	chr5	135162727	135162872	+	135162727	135162808	A3SS	ENSMUST00000153519.8	novel	0.00	0	24	0	24	n	0.07	3	41	3	41	n	0.00	0	16	0	16	n	0.00	0	43	0	43	n	0.00	0	48	0	48	n	0.00	0	9	0	9	n	0.18	8	36	8	36	y	0.00	0	11	0	11	n	0.14	7	44	7	44	n	0.00	0	66	0	66	n	0.10	6	52	6	52	n	0.16	9	49	9	49	y	ENSMUSG00000005373.14	Mlxipl	chr5	protein_coding	MLX interacting protein-like
novel_NIR_14656	chr5	135162727	135162875	+	135162727	135162801	A3SS	ENSMUST00000128691.8	novel	0.36	5	9	5	9	y	0.11	1	8	1	8	n	0.27	4	11	4	11	y	0.00	0	7	0	7	n	0.40	8	12	8	12	y	0.00	0	3	0	3	n	0.50	5	5	5	5	y	0.00	0	2	0	2	n	0.50	9	9	9	9	y	0.48	15	16	15	16	y	0.00	0	8	0	8	n	0.58	14	10	14	10	y	ENSMUSG00000005373.14	Mlxipl	chr5	protein_coding	MLX interacting protein-like
novel_NIR_14657	chr5	135162727	135162875	+	135162727	135162808	A3SS	ENSMUST00000153519.8	novel	0.17	5	24	5	24	y	0.02	1	41	1	41	n	0.20	4	16	4	16	y	0.00	0	43	0	43	n	0.14	8	48	8	48	n	0.00	0	9	0	9	n	0.12	5	36	5	36	n	0.00	0	11	0	11	n	0.17	9	44	9	44	y	0.19	15	66	15	66	y	0.00	0	52	0	52	n	0.22	14	49	14	49	y	ENSMUSG00000005373.14	Mlxipl	chr5	protein_coding	MLX interacting protein-like
novel_NIR_14658	chr5	135162727	135162902	+	135162727	135162801	A3SS	ENSMUST00000128691.8	novel	0.00	0	9	0	9	n	0.20	2	8	2	8	y	0.08	1	11	1	11	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.11	2	16	2	16	n	0.20	2	8	2	8	y	0.00	0	10	0	10	n	ENSMUSG00000005373.14	Mlxipl	chr5	protein_coding	MLX interacting protein-like
novel_NIR_14659	chr5	135162727	135162905	+	135162727	135162801	A3SS	ENSMUST00000128691.8	novel	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.12	1	7	1	7	n	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.31	4	9	4	9	y	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	ENSMUSG00000005373.14	Mlxipl	chr5	protein_coding	MLX interacting protein-like
novel_NIR_14660	chr5	135197962	135199941	+	135197420	135199941	A5SS	ENSMUST00000202606.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00	0	3	0	3	n	ENSMUSG00000029681.13	Bcl7b	chr5	protein_coding	B cell CLL/lymphoma 7B
novel_NIR_14661	chr5	135216610	135219379	+	135216610	135225326	A3SS	ENSMUST00000002825.6	novel	0.00	0	16	0	16	n	0.17	2	10	2	10	y	0.00	0	42	0	42	n	0.00	0	22	0	22	n	0.00	0	34	0	34	n	0.00	0	23	0	23	n	0.00	0	24	0	24	n	0.00	0	22	0	22	n	0.00	0	16	0	16	n	0.00	0	28	0	28	n	0.00	0	18	0	18	n	0.00	0	29	0	29	n	ENSMUSG00000002748.8	Baz1b	chr5	protein_coding	bromodomain adjacent to zinc finger domain, 1B
novel_NIR_14662	chr5	135599536	135599616	-	135599524	135599616	A3SS	ENSMUST00000201401.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000004814.11	Ccl24	chr5	protein_coding	chemokine (C-C motif) ligand 24
novel_NIR_14663	chr5	135661772	135664856	+	135661772	135663958	A3SS&ES	ENSMUST00000136748.6	novel	0.07	1	14	1	14	n	0.00	0	8	0	8	n	0.09	1	10	1	10	n	0.00	0	10	0	10	n	0.00	0	18	0	18	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.40	2	3	2	3	y	ENSMUSG00000039917.11	Rhbdd2	chr5	protein_coding	rhomboid domain containing 2
novel_NIR_14664	chr5	135661772	135664856	+	135661772	135666327	A3SS	ENSMUST00000130647.2	novel	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000039917.11	Rhbdd2	chr5	protein_coding	rhomboid domain containing 2
novel_NIR_14665	chr5	135664077	135664596	+	135664077	135664849	A3SS	ENSMUST00000136748.6	novel	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.11	1	8	1	8	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.25	2	6	2	6	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000039917.11	Rhbdd2	chr5	protein_coding	rhomboid domain containing 2
novel_NIR_14666	chr5	135664077;135664710	135664636;135664849	+	135664077	135664849	cassetteExon	ENSMUST00000136748.6	novel	0.29	2.5	6	0;5	6	n	0.17	1.0	5	0;2	5	n	0.42	5.0	7	1;9	7	n	0.00	0.0	9	0;0	9	n	0.24	2.5	8	2;3	8	y	0.33	3.5	7	2;5	7	y	0.44	4.0	5	0;8	5	n	0.27	1.5	4	0;3	4	n	0.25	1.0	3	0;2	3	n	0.00	0.0	6	0;0	6	n	0.33	1.5	3	0;3	3	n	0.09	0.5	5	0;1	5	n	ENSMUSG00000039917.11	Rhbdd2	chr5	protein_coding	rhomboid domain containing 2
novel_NIR_14667	chr5	135664710	135664849	+	135661772	135664849	A5SS	ENSMUST00000043707.7	novel	0.17	5	25	5	25	y	0.06	2	34	2	34	n	0.16	9	48	9	48	y	0.00	0	36	0	36	n	0.05	3	53	3	53	n	0.12	5	38	5	38	n	0.17	8	38	8	38	y	0.10	3	27	3	27	n	0.10	2	19	2	19	n	0.00	0	41	0	41	n	0.09	3	31	3	31	n	0.03	1	35	1	35	n	ENSMUSG00000039917.11	Rhbdd2	chr5	protein_coding	rhomboid domain containing 2
novel_NIR_14668	chr5	135664710	135664849	+	135664077	135664849	A5SS	ENSMUST00000136748.6	novel	0.45	5	6	5	6	y	0.29	2	5	2	5	y	0.56	9	7	9	7	n	0.00	0	9	0	9	n	0.27	3	8	3	8	n	0.42	5	7	5	7	n	0.62	8	5	8	5	y	0.43	3	4	3	4	y	0.40	2	3	2	3	y	0.00	0	6	0	6	n	0.50	3	3	3	3	y	0.17	1	5	1	5	n	ENSMUSG00000039917.11	Rhbdd2	chr5	protein_coding	rhomboid domain containing 2
novel_NIR_14669	chr5	135718106	135757516	+	135754895	135757516	5pMXE	ENSMUST00000127096.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000005514.15	Por	chr5	protein_coding	P450 (cytochrome) oxidoreductase
novel_NIR_14670	chr5	135739369	135744726	+	135698970	135744726	A5SS	ENSMUST00000153500.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000005514.15	Por	chr5	protein_coding	P450 (cytochrome) oxidoreductase
novel_NIR_14671	chr5	135772610	135772902	-	135771172	135772902	A3SS	ENSMUST00000153399.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	12	0	12	0	y	1.00	9	0	9	0	y	1.00	4	0	4	0	y	1.00	7	0	7	0	y	1.00	7	0	7	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	5	0	5	0	y	ENSMUSG00000039886.9	Tmem120a	chr5	protein_coding	transmembrane protein 120A
novel_NIR_14672	chr5	135787566	135787983	-	135784358	135787983	A3SS	ENSMUST00000111162.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000019178.18	Styxl1	chr5	protein_coding	serine/threonine/tyrosine interacting-like 1
novel_NIR_14673	chr5	135787566	135787983	-	135785998	135787983	A3SS	ENSMUST00000053906.11	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000019178.18	Styxl1	chr5	protein_coding	serine/threonine/tyrosine interacting-like 1
novel_NIR_14674	chr5	135800717	135807082	-	135799213	135807082	A3SS	ENSMUST00000177559.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000019178.18	Styxl1	chr5	protein_coding	serine/threonine/tyrosine interacting-like 1
novel_NIR_14675	chr5	135800717	135807082	-	135799257	135807082	A3SS	ENSMUST00000178796.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000019178.18	Styxl1	chr5	protein_coding	serine/threonine/tyrosine interacting-like 1
novel_NIR_14676	chr5	136070695	136072789	+	136070695;136071867	136071738;136072789	ES	ENSMUST00000062606.8	novel	-	-	-	-	-	-	0.00	0	2.5	0	1;4	n	-	-	-	-	-	-	0.00	0	2.5	0	1;4	n	0.00	0	2.5	0	1;4	n	0.44	2	2.5	2	2;3	y	0.00	0	7.0	0	7;7	n	-	-	-	-	-	-	0.00	0	0.5	0	0;1	n	0.00	0	5.0	0	3;7	n	-	-	-	-	-	-	0.00	0	6.0	0	3;9	n	ENSMUSG00000042985.8	Upk3b	chr5	protein_coding	uroplakin 3B
novel_NIR_14677	chr5	136145659	136148578	+	136145659	136150943	A3SS	ENSMUST00000111129.2	novel	0.67	2	1	2	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.20	1	4	1	4	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039771.14	Polr2j	chr5	protein_coding	polymerase (RNA) II (DNA directed) polypeptide J
novel_NIR_14678	chr5	136253173	136253259	-	136253176	136253259	A3SS	ENSMUST00000196397.5	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.25	1	3	1	3	n	-	-	-	-	-	-	ENSMUSG00000005057.14	Sh2b2	chr5	protein_coding	SH2B adaptor protein 2
novel_NIR_14679	chr5	137019936	137020185	+	137019938	137020185	A5SS	ENSMUST00000144784.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000004846.11	Plod3	chr5	protein_coding	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3
novel_NIR_14680	chr5	137300196	137300388	-	137299909	137300388	A3SS	ENSMUST00000223263.2	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	ENSMUSG00000037364.13	Srrt	chr5	protein_coding	serrate RNA effector molecule homolog (Arabidopsis)
novel_NIR_14681	chr5	137301139	137301268	-	137301139	137305308	A5SS	ENSMUST00000197484.2	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037364.13	Srrt	chr5	protein_coding	serrate RNA effector molecule homolog (Arabidopsis)
novel_NIR_14682	chr5	137320832	137321309	-	137320832;137321170	137320978;137321309	ES	ENSMUST00000039991.14	novel	0.12	3	23.0	3	21;25	n	0.33	8	16.5	8	12;21	y	0.12	2	15.0	2	12;18	n	0.00	0	11.5	0	7;16	n	0.16	3	16.0	3	13;19	y	0.21	2	7.5	2	3;12	y	0.27	9	24.0	9	19;29	y	0.17	3	15.0	3	7;23	y	0.00	0	11.0	0	9;13	n	0.26	8	23.0	8	18;28	y	0.17	4	19.5	4	21;18	y	0.16	5	27.0	5	16;38	y	ENSMUSG00000037344.15	Slc12a9	chr5	protein_coding	solute carrier family 12 (potassium/chloride transporters), member 9
novel_NIR_14683	chr5	137330940	137332148	-	137330940	137331131	5pMXE	ENSMUST00000156646.3	novel	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	12	0	12	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	4	0	4	0	y	1.00	5	0	5	0	y	ENSMUSG00000037344.15	Slc12a9	chr5	protein_coding	solute carrier family 12 (potassium/chloride transporters), member 9
novel_NIR_14684	chr5	137330940	137332148	-	137330940	137331710	5pMXE	ENSMUST00000039991.14	novel	0.40	4	6	4	6	y	0.29	2	5	2	5	y	0.14	1	6	1	6	n	0.40	4	6	4	6	y	0.57	12	9	12	9	y	-	-	-	-	-	-	0.71	5	2	5	2	y	0.14	1	6	1	6	n	0.00	0	4	0	4	n	0.50	4	4	4	4	y	0.80	4	1	4	1	y	0.50	5	5	5	5	y	ENSMUSG00000037344.15	Slc12a9	chr5	protein_coding	solute carrier family 12 (potassium/chloride transporters), member 9
novel_NIR_14685	chr5	137370479	137370678	+	137370479	137371774	A3SS	ENSMUST00000111054.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029710.16	Ephb4	chr5	protein_coding	Eph receptor B4
novel_NIR_14686	chr5	137516874	137516950	+	137516874	137517140	A3SS	ENSMUST00000197624.5	novel	0.33	1	2	1	2	n	0.33	6	12	6	12	n	0.14	3	18	3	18	n	0.17	2	10	2	10	n	0.29	6	15	6	15	n	0.00	0	3	0	3	n	0.14	2	12	2	12	n	0.36	4	7	4	7	y	0.38	5	8	5	8	y	0.23	6	20	6	20	n	0.44	7	9	7	9	n	0.48	13	14	13	14	n	ENSMUSG00000029714.12	Gigyf1	chr5	protein_coding	GRB10 interacting GYF protein 1
novel_NIR_14687	chr5	137516874;137517015	137516950;137517140	+	137516874	137517140	cassetteExon	ENSMUST00000197624.5	novel	0.50	2.0	2	1;3	2	n	0.25	4.0	12	6;2	12	y	0.23	5.5	18	3;8	18	y	0.17	2.0	10	2;2	10	y	0.35	8.0	15	6;10	15	y	0.14	0.5	3	0;1	3	n	0.20	3.0	12	2;4	12	y	0.22	2.0	7	4;0	7	n	0.24	2.5	8	5;0	8	n	0.25	6.5	20	6;7	20	y	0.44	7.0	9	7;7	9	y	0.49	13.5	14	13;14	14	y	ENSMUSG00000029714.12	Gigyf1	chr5	protein_coding	GRB10 interacting GYF protein 1
novel_NIR_14688	chr5	137519062	137519150	+	137519062	137519147	A3SS	ENSMUST00000031727.10	novel	0.20	2	8	2	8	y	0.00	0	10	0	10	n	0.05	1	19	1	19	n	0.00	0	13	0	13	n	0.00	0	21	0	21	n	0.00	0	4	0	4	n	0.06	1	15	1	15	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.15	3	17	3	17	y	0.07	1	14	1	14	n	0.00	0	15	0	15	n	ENSMUSG00000029714.12	Gigyf1	chr5	protein_coding	GRB10 interacting GYF protein 1
novel_NIR_14689	chr5	137519264;137519450	137519372;137520110	+	137519264	137520110	cassetteExon	ENSMUST00000031727.10	novel	0.00	0.0	6	0;0	6	n	0.00	0.0	9	0;0	9	n	0.00	0.0	25	0;0	25	n	0.19	2.5	11	3;2	11	y	0.00	0.0	16	0;0	16	n	0.00	0.0	11	0;0	11	n	0.00	0.0	15	0;0	15	n	0.00	0.0	11	0;0	11	n	0.00	0.0	18	0;0	18	n	0.00	0.0	21	0;0	21	n	0.00	0.0	7	0;0	7	n	0.00	0.0	14	0;0	14	n	ENSMUSG00000029714.12	Gigyf1	chr5	protein_coding	GRB10 interacting GYF protein 1
novel_NIR_14690	chr5	137521029	137521217	+	137521089	137521217	A5SS	ENSMUST00000031727.10	novel	0.00	0	20	0	20	n	0.00	0	20	0	20	n	0.16	5	26	5	26	y	0.00	0	30	0	30	n	0.10	3	26	3	26	n	0.00	0	14	0	14	n	0.00	0	29	0	29	n	0.00	0	22	0	22	n	0.05	1	20	1	20	n	0.00	0	40	0	40	n	0.00	0	23	0	23	n	0.00	0	38	0	38	n	ENSMUSG00000029714.12	Gigyf1	chr5	protein_coding	GRB10 interacting GYF protein 1
novel_NIR_14691	chr5	137522675	137522916	+	137522675	137522913	A3SS	ENSMUST00000031727.10	novel	0.00	0	15	0	15	n	0.60	3	2	3	2	y	0.28	5	13	5	13	y	0.17	3	15	3	15	y	0.11	2	17	2	17	n	0.44	4	5	4	5	y	0.00	0	8	0	8	n	0.20	2	8	2	8	y	0.22	2	7	2	7	y	0.32	6	13	6	13	y	0.00	0	9	0	9	n	0.37	10	17	10	17	y	ENSMUSG00000029714.12	Gigyf1	chr5	protein_coding	GRB10 interacting GYF protein 1
novel_NIR_14692	chr5	137568196	137569250	+	137569041	137569250	5pMXE	ENSMUST00000196471.5	novel	0.17	2	10	2	10	y	0.00	0	8	0	8	n	0.25	2	6	2	6	y	0.26	7	20	7	20	y	0.43	10	13	10	13	y	0.50	4	4	4	4	y	0.28	5	13	5	13	y	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.38	6	10	6	10	y	0.25	1	3	1	3	n	0.00	0	13	0	13	n	ENSMUSG00000029716.14	Tfr2	chr5	protein_coding	transferrin receptor 2
novel_NIR_14693	chr5	137568203	137568334	+	137568215	137568334	A5SS	ENSMUST00000200190.5	novel	0.24	8	26	8	26	y	0.17	4	20	4	20	y	0.30	16	37	16	37	y	0.17	11	55	11	55	y	0.15	10	56	10	56	y	0.29	12	30	12	30	y	0.28	17	44	17	44	y	0.20	7	28	7	28	y	0.21	10	38	10	38	y	0.33	25	51	25	51	y	0.12	5	36	5	36	n	0.15	10	55	10	55	y	ENSMUSG00000029716.14	Tfr2	chr5	protein_coding	transferrin receptor 2
novel_NIR_14694	chr5	137568215	137568340	+	137568215	137568334	A3SS	ENSMUST00000200190.5	novel	0.00	0	26	0	26	n	0.00	0	20	0	20	n	0.00	0	37	0	37	n	0.00	0	55	0	55	n	0.00	0	56	0	56	n	0.00	0	30	0	30	n	0.19	10	44	10	44	y	0.10	3	28	3	28	n	0.00	0	38	0	38	n	0.00	0	51	0	51	n	0.00	0	36	0	36	n	0.00	0	55	0	55	n	ENSMUSG00000029716.14	Tfr2	chr5	protein_coding	transferrin receptor 2
novel_NIR_14695	chr5	137568215	137569250	+	137569041	137569250	5pMXE	ENSMUST00000196471.5	novel	0.17	2	10	2	10	y	0.00	0	8	0	8	n	0.33	3	6	3	6	y	0.20	5	20	5	20	y	0.07	1	13	1	13	n	0.00	0	4	0	4	n	0.19	3	13	3	13	y	0.25	3	9	3	9	y	0.09	1	10	1	10	n	0.33	5	10	5	10	y	0.40	2	3	2	3	y	0.13	2	13	2	13	n	ENSMUSG00000029716.14	Tfr2	chr5	protein_coding	transferrin receptor 2
novel_NIR_14696	chr5	137568221	137568334	+	137568196	137568334	A5SS	ENSMUST00000031729.13	novel	0.39	98	153	98	153	y	0.38	84	136	84	136	y	0.41	130	184	130	184	y	0.42	163	227	163	227	y	0.36	158	284	158	284	y	0.47	76	87	76	87	y	0.31	95	215	95	215	y	0.42	112	156	112	156	y	0.32	97	206	97	206	y	0.34	160	307	160	307	y	0.38	107	177	107	177	y	0.35	130	243	130	243	y	ENSMUSG00000029716.14	Tfr2	chr5	protein_coding	transferrin receptor 2
novel_NIR_14697	chr5	137568221	137568334	+	137568215	137568334	A5SS	ENSMUST00000200190.5	novel	0.79	98	26	98	26	y	0.81	84	20	84	20	y	0.78	130	37	130	37	y	0.75	163	55	163	55	y	0.74	158	56	158	56	y	0.72	76	30	76	30	y	0.68	95	44	95	44	y	0.80	112	28	112	28	y	0.72	97	38	97	38	y	0.76	160	51	160	51	y	0.75	107	36	107	36	y	0.70	130	55	130	55	y	ENSMUSG00000029716.14	Tfr2	chr5	protein_coding	transferrin receptor 2
novel_NIR_14698	chr5	137568221	137568334	+	137568256	137568334	A5SS	ENSMUST00000199054.5	novel	0.50	98	97	98	97	y	0.52	84	77	84	77	y	0.53	130	115	130	115	y	0.59	163	112	163	112	y	0.53	158	139	158	139	y	0.51	76	74	76	74	y	0.47	95	109	95	109	y	0.60	112	75	112	75	y	0.57	97	72	97	72	y	0.52	160	148	160	148	y	0.55	107	88	107	88	y	0.50	130	130	130	130	y	ENSMUSG00000029716.14	Tfr2	chr5	protein_coding	transferrin receptor 2
novel_NIR_14699	chr5	137568221	137569250	+	137569041	137569250	5pMXE	ENSMUST00000196471.5	novel	0.38	6	10	6	10	y	0.33	4	8	4	8	y	0.40	4	6	4	6	y	0.33	10	20	10	20	y	0.46	11	13	11	13	y	0.33	2	4	2	4	y	0.19	3	13	3	13	y	0.00	0	9	0	9	n	0.17	2	10	2	10	y	0.29	4	10	4	10	y	0.00	0	3	0	3	n	0.19	3	13	3	13	y	ENSMUSG00000029716.14	Tfr2	chr5	protein_coding	transferrin receptor 2
novel_NIR_14700	chr5	137568295	137569250	+	137569041	137569250	5pMXE	ENSMUST00000196471.5	novel	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.05	1	20	1	20	n	0.13	2	13	2	13	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.17	2	10	2	10	y	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.13	2	13	2	13	n	ENSMUSG00000029716.14	Tfr2	chr5	protein_coding	transferrin receptor 2
novel_NIR_14701	chr5	137568788	137569250	+	137569041	137569250	5pMXE	ENSMUST00000196471.5	novel	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.25	2	6	2	6	y	0.00	0	20	0	20	n	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.25	1	3	1	3	n	0.00	0	13	0	13	n	ENSMUSG00000029716.14	Tfr2	chr5	protein_coding	transferrin receptor 2
novel_NIR_14702	chr5	137636804	137636923	+	137636804	137637384	A3SS	ENSMUST00000176871.2	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000093445.8	Lrch4	chr5	protein_coding	leucine-rich repeats and calponin homology (CH) domain containing 4
novel_NIR_14703	chr5	137638936	137639027	+	137637917	137639027	A5SS	ENSMUST00000176667.8	novel	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.14	1	6	1	6	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.20	2	8	2	8	y	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	ENSMUSG00000093445.8	Lrch4	chr5	protein_coding	leucine-rich repeats and calponin homology (CH) domain containing 4
novel_NIR_14704	chr5	137822049	137825116	-	137822049;137822311	137822265;137825116	ES	ENSMUST00000058897.11	novel	0.00	0	13.0	0	13;13	n	0.00	0	11.5	0	10;13	n	0.00	0	15.0	0	12;18	n	0.00	0	8.0	0	7;9	n	0.00	0	30.5	0	36;25	n	0.00	0	11.0	0	12;10	n	0.00	0	21.5	0	21;22	n	0.00	0	5.0	0	6;4	n	0.00	0	7.0	0	6;8	n	0.22	2	7.0	2	6;8	y	0.00	0	16.0	0	15;17	n	0.00	0	16.0	0	14;18	n	ENSMUSG00000046245.14	Pilra	chr5	protein_coding	paired immunoglobin-like type 2 receptor alpha
novel_NIR_14705	chr5	137979882	137983428	+	137979882	137983500	A3SS	ENSMUST00000197571.2	novel	0.00	0	189	0	189	n	0.00	0	192	0	192	n	0.19	29	124	29	124	y	0.00	0	216	0	216	n	0.00	0	279	0	279	n	0.00	0	123	0	123	n	0.00	0	287	0	287	n	0.00	0	169	0	169	n	0.00	0	214	0	214	n	0.00	0	232	0	232	n	0.00	0	210	0	210	n	0.00	0	214	0	214	n	ENSMUSG00000037053.7	Azgp1	chr5	protein_coding	alpha-2-glycoprotein 1, zinc
novel_NIR_14706	chr5	137979882	137983480	+	137979882	137983500	A3SS	ENSMUST00000197571.2	novel	0.30	81	189	81	189	y	0.39	122	192	122	192	y	0.42	90	124	90	124	y	0.41	148	216	148	216	y	0.40	187	279	187	279	y	0.32	58	123	58	123	y	0.37	166	287	166	287	y	0.32	80	169	80	169	y	0.37	124	214	124	214	y	0.47	203	232	203	232	y	0.39	132	210	132	210	y	0.44	170	214	170	214	y	ENSMUSG00000037053.7	Azgp1	chr5	protein_coding	alpha-2-glycoprotein 1, zinc
novel_NIR_14707	chr5	138083493	138084581	+	138083493	138091188	A3SS	ENSMUST00000110963.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000029729.13	Zkscan1	chr5	protein_coding	zinc finger with KRAB and SCAN domains 1
novel_NIR_14708	chr5	138087744	138091182	+	138083493	138091182	A5SS	ENSMUST00000019660.11	novel	0.38	3	5	3	5	y	0.17	1	5	1	5	n	0.00	0	15	0	15	n	0.25	5	15	5	15	y	0.23	6	20	6	20	y	0.06	1	17	1	17	n	0.12	3	22	3	22	n	0.05	1	19	1	19	n	0.00	0	10	0	10	n	0.24	5	16	5	16	y	0.00	0	11	0	11	n	0.14	3	19	3	19	n	ENSMUSG00000029729.13	Zkscan1	chr5	protein_coding	zinc finger with KRAB and SCAN domains 1
novel_NIR_14709	chr5	138092401	138094046	+	138092401	138098852	A3SS	ENSMUST00000066617.12	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.17	1	5	1	5	n	0.20	1	4	1	4	n	1.00	1	0	1	0	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.67	2	1	2	1	y	ENSMUSG00000029729.13	Zkscan1	chr5	protein_coding	zinc finger with KRAB and SCAN domains 1
novel_NIR_14710	chr5	138148995	138151107	-	138148995;138149558	138149467;138151107	ES	ENSMUST00000049393.15	novel	0.00	0	8.0	0	4;12	n	0.00	0	2.0	0	1;3	n	0.00	0	5.0	0	5;5	n	0.00	0	6.5	0	4;9	n	0.17	2	9.5	2	7;12	y	0.00	0	4.0	0	4;4	n	0.00	0	5.0	0	0;10	n	0.00	0	6.0	0	4;8	n	0.00	0	3.5	0	3;4	n	0.27	2	5.5	2	4;7	y	0.00	0	3.0	0	0;6	n	0.24	2	6.5	2	6;7	y	ENSMUSG00000037007.18	Zfp113	chr5	protein_coding	zinc finger protein 113
novel_NIR_14711	chr5	138177395	138177675	-	138177222	138177675	A3SS	ENSMUST00000110937.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036980.14	Taf6	chr5	protein_coding	TATA-box binding protein associated factor 6
novel_NIR_14712	chr5	138182809	138185325	-	138182809	138185037	A5SS	ENSMUST00000153117.8	novel	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000036980.14	Taf6	chr5	protein_coding	TATA-box binding protein associated factor 6
novel_NIR_14713	chr5	138182809	138185325	-	138182809	138185224	A5SS	ENSMUST00000123415.8	novel	0.29	2	5	2	5	y	0.40	2	3	2	3	y	0.50	2	2	2	2	y	0.33	1	2	1	2	n	0.50	3	3	3	3	y	-	-	-	-	-	-	0.17	1	5	1	5	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.18	2	9	2	9	y	0.14	1	6	1	6	n	0.00	0	5	0	5	n	ENSMUSG00000036980.14	Taf6	chr5	protein_coding	TATA-box binding protein associated factor 6
novel_NIR_14714	chr5	138182809	138185325	-	138182809	138185346	A5SS	ENSMUST00000139276.2	novel	0.25	2	6	2	6	y	0.40	2	3	2	3	y	0.25	2	6	2	6	y	0.25	1	3	1	3	n	0.60	3	2	3	2	y	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.38	3	5	3	5	y	0.25	2	6	2	6	y	0.11	1	8	1	8	n	-	-	-	-	-	-	ENSMUSG00000036980.14	Taf6	chr5	protein_coding	TATA-box binding protein associated factor 6
novel_NIR_14715	chr5	138182809	138185325	-	138182809	138185432	A5SS	ENSMUST00000048698.14	novel	0.20	2	8	2	8	y	0.18	2	9	2	9	y	0.15	2	11	2	11	y	0.07	1	14	1	14	n	0.14	3	19	3	19	n	0.00	0	4	0	4	n	0.11	1	8	1	8	n	0.00	0	4	0	4	n	0.17	3	15	3	15	y	0.11	2	16	2	16	n	0.09	1	10	1	10	n	0.00	0	17	0	17	n	ENSMUSG00000036980.14	Taf6	chr5	protein_coding	TATA-box binding protein associated factor 6
novel_NIR_14716	chr5	138182809	138185325	-	138182809	138185653	A5SS	ENSMUST00000110936.8	novel	0.67	2	1	2	1	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.60	3	2	3	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.75	3	1	3	1	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000036980.14	Taf6	chr5	protein_coding	TATA-box binding protein associated factor 6
novel_NIR_14717	chr5	138190222;138190495	138190469;138190823	+	138190222	138190823	cassetteExon	ENSMUST00000110934.9	novel	0.00	0.0	25	0;0	25	n	0.04	0.5	13	0;1	13	n	0.04	0.5	12	1;0	12	n	0.05	1.0	19	1;1	19	n	0.00	0.0	24	0;0	24	n	0.00	0.0	13	0;0	13	n	0.00	0.0	24	0;0	24	n	0.00	0.0	9	0;0	9	n	0.00	0.0	17	0;0	17	n	0.15	3.0	17	3;3	17	y	0.00	0.0	20	0;0	20	n	0.00	0.0	24	0;0	24	n	ENSMUSG00000036968.16	Cnpy4	chr5	protein_coding	canopy FGF signaling regulator 4
novel_NIR_14718	chr5	138259251	138259852	-	138259251	138260064	A5SS	ENSMUST00000159123.8	novel	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.22	2	7	2	7	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	ENSMUSG00000036948.18	Map11	chr5	protein_coding	microtubule associated protein 11
novel_NIR_14719	chr5	138453351	138461129	+	138453351	138454137	3pMXE	ENSMUST00000085856.12	novel	0.20	1	4	1	4	n	0.33	1	2	1	2	n	0.00	0	6	0	6	n	0.33	4	8	4	8	y	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	1.00	1	0	1	0	n	0.12	1	7	1	7	n	0.00	0	6	0	6	n	0.11	1	8	1	8	n	ENSMUSG00000036898.17	Zfp157	chr5	protein_coding	zinc finger protein 157
novel_NIR_14720	chr5	138453351	138461129	+	138453351	138454141	3pMXE	ENSMUST00000100524.3	novel	0.50	1	1	1	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	4	0	4	0	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	ENSMUSG00000036898.17	Zfp157	chr5	protein_coding	zinc finger protein 157
novel_NIR_14721	chr5	138962982	138964050	-	138962982	138964377	A5SS	ENSMUST00000046901.14	novel	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.17	1	5	1	5	n	0.18	2	9	2	9	y	ENSMUSG00000025856.16	Pdgfa	chr5	protein_coding	platelet derived growth factor, alpha
novel_NIR_14722	chr5	138962982	138964050	-	138962982	138964901	A5SS	ENSMUST00000076095.14	novel	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.05	1	19	1	19	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.12	1	7	1	7	n	0.22	2	7	2	7	y	ENSMUSG00000025856.16	Pdgfa	chr5	protein_coding	platelet derived growth factor, alpha
novel_NIR_14723	chr5	138974208	138979047	-	138974208	138979043	A5SS	ENSMUST00000076095.14	novel	0.09	1	10	1	10	n	0.29	2	5	2	5	y	0.00	0	15	0	15	n	0.00	0	19	0	19	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.11	1	8	1	8	n	0.10	2	19	2	19	n	0.10	1	9	1	9	n	0.00	0	7	0	7	n	ENSMUSG00000025856.16	Pdgfa	chr5	protein_coding	platelet derived growth factor, alpha
novel_NIR_14724	chr5	139201009	139215508	+	139201009	139209333	3pMXE	ENSMUST00000127045.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036817.15	Sun1	chr5	protein_coding	Sad1 and UNC84 domain containing 1
novel_NIR_14725	chr5	139215699	139219226	+	139212640	139219226	A5SS	ENSMUST00000110883.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000036817.15	Sun1	chr5	protein_coding	Sad1 and UNC84 domain containing 1
novel_NIR_14726	chr5	139215699	139219226	+	139215699	139219656	A3SS	ENSMUST00000135926.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000036817.15	Sun1	chr5	protein_coding	Sad1 and UNC84 domain containing 1
novel_NIR_14727	chr5	139215699	139219226	+	139215699;139216593	139216528;139219226	ES	ENSMUST00000110884.9	novel	0.00	0	3.5	0	5;2	n	0.00	0	7.0	0	13;1	n	0.00	0	8.0	0	15;1	n	0.00	0	4.5	0	7;2	n	0.00	0	6.5	0	13;0	n	0.00	0	3.0	0	6;0	n	0.00	0	7.5	0	12;3	n	0.00	0	4.0	0	5;3	n	0.00	0	4.0	0	6;2	n	0.00	0	10.0	0	17;3	n	0.00	0	4.0	0	6;2	n	0.25	3	9.0	3	16;2	y	ENSMUSG00000036817.15	Sun1	chr5	protein_coding	Sad1 and UNC84 domain containing 1
novel_NIR_14728	chr5	139215699	139219226	+	139216992	139219226	A5SS&ES	ENSMUST00000078690.13	novel	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	22	0	22	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.27	3	8	3	8	y	ENSMUSG00000036817.15	Sun1	chr5	protein_coding	Sad1 and UNC84 domain containing 1
novel_NIR_14729	chr5	139239356	139242800	+	139239356	139248236	A3SS	ENSMUST00000138508.8	novel	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.29	2	5	2	5	y	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	ENSMUSG00000025858.13	Get4	chr5	protein_coding	golgi to ER traffic protein 4
novel_NIR_14730	chr5	139324126	139325220	-	139324130	139325220	A3SS	ENSMUST00000133951.2	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.50	10	10	10	10	y	0.00	0	6	0	6	n	ENSMUSG00000045438.13	Cox19	chr5	protein_coding	cytochrome c oxidase assembly protein 19
novel_NIR_14731	chr5	139324126	139325220	-	139325140	139325220	A3SS&ES	ENSMUST00000145125.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.77	10	3	10	3	y	0.00	0	4	0	4	n	ENSMUSG00000045438.13	Cox19	chr5	protein_coding	cytochrome c oxidase assembly protein 19
novel_NIR_14732	chr5	139324126	139330827	-	139324130	139330827	A3SS	ENSMUST00000197520.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045438.13	Cox19	chr5	protein_coding	cytochrome c oxidase assembly protein 19
novel_NIR_14733	chr5	139324130	139324904	-	139324130	139324495	A5SS&ES	ENSMUST00000145125.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045438.13	Cox19	chr5	protein_coding	cytochrome c oxidase assembly protein 19
novel_NIR_14734	chr5	139324130	139324904	-	139324130	139330827	A5SS	ENSMUST00000197520.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045438.13	Cox19	chr5	protein_coding	cytochrome c oxidase assembly protein 19
novel_NIR_14735	chr5	139324130	139324937	-	139324130	139325220	A5SS	ENSMUST00000133951.2	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.50	4	4	4	4	n	0.80	4	1	4	1	y	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.25	2	6	2	6	y	0.20	2	8	2	8	n	0.00	0	4	0	4	n	0.45	5	6	5	6	y	0.00	0	10	0	10	n	0.14	1	6	1	6	n	ENSMUSG00000045438.13	Cox19	chr5	protein_coding	cytochrome c oxidase assembly protein 19
novel_NIR_14736	chr5	139324130	139324937	-	139324130	139330827	A5SS	ENSMUST00000197520.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	4	0	4	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	5	0	5	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000045438.13	Cox19	chr5	protein_coding	cytochrome c oxidase assembly protein 19
novel_NIR_14737	chr5	139324130	139324937	-	139324130;139324597	139324495;139324937	ES	ENSMUST00000145125.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0.0	4	0;0	y	1.00	4	0.0	4	0;0	y	0.00	0	1.5	0	2;1	n	-	-	-	-	-	-	0.57	2	1.5	2	0;3	y	0.80	2	0.5	2	0;1	y	-	-	-	-	-	-	0.91	5	0.5	5	1;0	y	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	ENSMUSG00000045438.13	Cox19	chr5	protein_coding	cytochrome c oxidase assembly protein 19
novel_NIR_14738	chr5	139324130;139324994	139324904;139328318	-	139324130;139325331	139325220;139328318	MXE	ENSMUST00000133951.2	novel	0.00	0.0	3.5	0;0	4;3	n	0.00	0.0	1.0	0;0	2;0	n	0.20	0.5	2.0	1;0	4;0	n	0.00	0.0	1.0	0;0	1;1	n	0.00	0.0	6.0	0;0	10;2	n	0.00	0.0	2.5	0;0	5;0	n	0.00	0.0	4.5	0;0	6;3	n	0.33	2.0	4.0	2;2	8;0	y	0.00	0.0	2.5	0;0	4;1	n	0.00	0.0	3.0	0;0	6;0	n	0.00	0.0	5.0	0;0	10;0	n	0.14	0.5	3.0	0;1	6;0	n	ENSMUSG00000045438.13	Cox19	chr5	protein_coding	cytochrome c oxidase assembly protein 19
novel_NIR_14739	chr5	139324130;139324994	139324937;139328318	-	139324130;139325331	139325220;139328318	MXE	ENSMUST00000133951.2	novel	0.00	0.0	3.5	0;0	4;3	n	0.00	0.0	1.0	0;0	2;0	n	0.50	2.0	2.0	4;0	4;0	n	0.67	2.0	1.0	4;0	1;1	n	0.00	0.0	6.0	0;0	10;2	n	0.00	0.0	2.5	0;0	5;0	n	0.18	1.0	4.5	2;0	6;3	n	0.33	2.0	4.0	2;2	8;0	y	0.00	0.0	2.5	0;0	4;1	n	0.45	2.5	3.0	5;0	6;0	n	0.00	0.0	5.0	0;0	10;0	n	0.25	1.0	3.0	1;1	6;0	n	ENSMUSG00000045438.13	Cox19	chr5	protein_coding	cytochrome c oxidase assembly protein 19
novel_NIR_14740	chr5	139324130;139325140	139324937;139328318	-	139324130;139325331	139325220;139328318	MXE	ENSMUST00000133951.2	novel	0.00	0.0	3.5	0;0	4;3	n	0.00	0.0	1.0	0;0	2;0	n	0.64	3.5	2.0	4;3	4;0	y	0.67	2.0	1.0	4;0	1;1	n	0.00	0.0	6.0	0;0	10;2	n	0.00	0.0	2.5	0;0	5;0	n	0.18	1.0	4.5	2;0	6;3	n	0.20	1.0	4.0	2;0	8;0	n	0.00	0.0	2.5	0;0	4;1	n	0.45	2.5	3.0	5;0	6;0	n	0.00	0.0	5.0	0;0	10;0	n	0.14	0.5	3.0	1;0	6;0	n	ENSMUSG00000045438.13	Cox19	chr5	protein_coding	cytochrome c oxidase assembly protein 19
novel_NIR_14741	chr5	139325140	139328318	-	139325140	139325220	5pMXE	ENSMUST00000145125.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.75	3	1	3	1	y	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000045438.13	Cox19	chr5	protein_coding	cytochrome c oxidase assembly protein 19
novel_NIR_14742	chr5	139325338	139328318	-	139325331	139328318	A3SS	ENSMUST00000133951.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	ENSMUSG00000045438.13	Cox19	chr5	protein_coding	cytochrome c oxidase assembly protein 19
novel_NIR_14743	chr5	139349918	139350019	-	139349918	139441172	A5SS	ENSMUST00000066052.12	novel	0.56	5	4	5	4	y	0.64	7	4	7	4	y	0.77	10	3	10	3	y	1.00	12	0	12	0	y	0.90	19	2	19	2	y	0.33	3	6	3	6	y	0.70	21	9	21	9	y	0.62	5	3	5	3	y	0.90	9	1	9	1	y	1.00	16	0	16	0	y	0.91	21	2	21	2	y	0.93	54	4	54	4	y	ENSMUSG00000053553.12	3110082I17Rik	chr5	protein_coding	RIKEN cDNA 3110082I17 gene
novel_NIR_14744	chr5	139349918	139350627	-	139349918	139441172	A5SS	ENSMUST00000066052.12	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	6	0	6	n	0.10	1	9	1	9	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000053553.12	3110082I17Rik	chr5	protein_coding	RIKEN cDNA 3110082I17 gene
novel_NIR_14745	chr5	139349918	139391591	-	139349918	139441172	A5SS	ENSMUST00000066052.12	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.50	2	2	2	2	y	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000053553.12	3110082I17Rik	chr5	protein_coding	RIKEN cDNA 3110082I17 gene
novel_NIR_14746	chr5	139738580	139739204	-	139738580	139739216	A5SS	ENSMUST00000072607.9	novel	0.23	10	34	10	34	y	0.41	15	22	15	22	y	0.38	15	25	15	25	y	0.55	12	10	12	10	y	0.32	21	45	21	45	y	0.45	13	16	13	16	y	0.34	12	23	12	23	y	0.15	4	22	4	22	y	0.24	11	35	11	35	y	0.31	16	36	16	36	y	0.24	8	26	8	26	y	0.22	8	29	8	29	y	ENSMUSG00000029547.11	Ints1	chr5	protein_coding	integrator complex subunit 1
novel_NIR_14747	chr5	139761185	139761355	-	139761185	139761376	A5SS	ENSMUST00000196864.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000029547.11	Ints1	chr5	protein_coding	integrator complex subunit 1
novel_NIR_14748	chr5	139798947	139799982	-	139798947	139799683	5pMXE	ENSMUST00000146780.3	novel	0.00	0	5	0	5	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.60	3	2	3	2	y	0.00	0	15	0	15	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	ENSMUSG00000036687.14	Tmem184a	chr5	protein_coding	transmembrane protein 184a
novel_NIR_14749	chr5	139798947	139799982	-	139798947	139799808	A5SS	ENSMUST00000044002.10	novel	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	18	0	18	n	0.00	0	22	0	22	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.20	3	12	3	12	y	0.00	0	25	0	25	n	0.00	0	13	0	13	n	0.00	0	17	0	17	n	ENSMUSG00000036687.14	Tmem184a	chr5	protein_coding	transmembrane protein 184a
novel_NIR_14750	chr5	139798947	139799982	-	139798947	139805503	A5SS	ENSMUST00000147328.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036687.14	Tmem184a	chr5	protein_coding	transmembrane protein 184a
novel_NIR_14751	chr5	139798947	139799982	-	139798947	139811883	A5SS	ENSMUST00000182839.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000098140.2	Gm26938	chr5	protein_coding	predicted gene, 26938
novel_NIR_14752	chr5	140051759	140179669	-	140153116	140179669	3pMXE	ENSMUST00000132832.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029554.16	Mad1l1	chr5	protein_coding	MAD1 mitotic arrest deficient 1-like 1
novel_NIR_14753	chr5	140074592	140191648	-	140074592	140102992	A5SS&ES	ENSMUST00000110829.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	ENSMUSG00000029554.16	Mad1l1	chr5	protein_coding	MAD1 mitotic arrest deficient 1-like 1
novel_NIR_14754	chr5	140103080	140103586	-	140103080	140118524	A5SS	ENSMUST00000110829.7	novel	0.17	5	25	5	25	y	0.14	3	19	3	19	n	0.05	2	42	2	42	n	0.07	1	13	1	13	n	0.08	3	34	3	34	n	0.04	1	23	1	23	n	0.08	2	22	2	22	n	0.03	1	32	1	32	n	0.05	1	18	1	18	n	0.17	5	24	5	24	y	0.22	4	14	4	14	y	0.00	0	22	0	22	n	ENSMUSG00000029554.16	Mad1l1	chr5	protein_coding	MAD1 mitotic arrest deficient 1-like 1
novel_NIR_14755	chr5	140129815	140136719	-	140129815	140160288	A5SS	ENSMUST00000129747.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029554.16	Mad1l1	chr5	protein_coding	MAD1 mitotic arrest deficient 1-like 1
novel_NIR_14756	chr5	140129815	140191648	-	140129815	140160288	5pMXE	ENSMUST00000129747.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029554.16	Mad1l1	chr5	protein_coding	MAD1 mitotic arrest deficient 1-like 1
novel_NIR_14757	chr5	140179813	140179937	-	140179813	140247253	A5SS	ENSMUST00000110829.7	novel	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.27	3	8	3	8	y	0.00	0	10	0	10	n	0.00	0	19	0	19	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	20	0	20	n	0.00	0	13	0	13	n	ENSMUSG00000029554.16	Mad1l1	chr5	protein_coding	MAD1 mitotic arrest deficient 1-like 1
novel_NIR_14758	chr5	140179813	140185450	-	140179813	140247253	A5SS	ENSMUST00000110829.7	novel	0.00	0	15	0	15	n	0.18	2	9	2	9	y	0.11	1	8	1	8	n	0.09	1	10	1	10	n	0.05	1	19	1	19	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.08	1	12	1	12	n	0.00	0	20	0	20	n	0.00	0	13	0	13	n	ENSMUSG00000029554.16	Mad1l1	chr5	protein_coding	MAD1 mitotic arrest deficient 1-like 1
novel_NIR_14759	chr5	140179813	140191648	-	140179813	140247253	A5SS	ENSMUST00000110829.7	novel	0.21	4	15	4	15	y	0.53	10	9	10	9	y	0.81	34	8	34	8	y	0.17	2	10	2	10	y	0.37	11	19	11	19	y	0.71	12	5	12	5	y	0.64	9	5	9	5	y	0.50	7	7	7	7	y	0.43	6	8	6	8	y	0.20	3	12	3	12	y	0.20	5	20	5	20	y	0.43	10	13	10	13	y	ENSMUSG00000029554.16	Mad1l1	chr5	protein_coding	MAD1 mitotic arrest deficient 1-like 1
novel_NIR_14760	chr5	140179813	140197034	-	140179813	140247253	A5SS	ENSMUST00000110829.7	novel	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.09	1	10	1	10	n	0.05	1	19	1	19	n	0.38	3	5	3	5	y	0.00	0	5	0	5	n	0.22	2	7	2	7	y	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	20	0	20	n	0.00	0	13	0	13	n	ENSMUSG00000029554.16	Mad1l1	chr5	protein_coding	MAD1 mitotic arrest deficient 1-like 1
novel_NIR_14761	chr5	140296490	140771152	-	140746873	140771152	3pMXE	ENSMUST00000198447.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000000149.11	Gna12	chr5	protein_coding	guanine nucleotide binding protein, alpha 12
novel_NIR_14762	chr5	140300904	140307262	-	140300907	140307262	A3SS	ENSMUST00000110829.7	novel	0.09	1	10	1	10	n	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.25	2	6	2	6	y	0.12	1	7	1	7	n	0.14	1	6	1	6	n	0.17	1	5	1	5	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.12	1	7	1	7	n	0.40	4	6	4	6	y	0.00	0	5	0	5	n	ENSMUSG00000029554.16	Mad1l1	chr5	protein_coding	MAD1 mitotic arrest deficient 1-like 1
novel_NIR_14763	chr5	140317710	140318150	+	140317710	140320210	A3SS	ENSMUST00000071881.10	novel	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.07	1	13	1	13	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.33	4	8	4	8	n	0.00	0	8	0	8	n	0.25	2	6	2	6	y	ENSMUSG00000036639.13	Nudt1	chr5	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 1
novel_NIR_14764	chr5	140428191	140428831	+	140428191	140428397	3pMXE	ENSMUST00000199377.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	3	3	3	3	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000056076.14	Eif3b	chr5	protein_coding	eukaryotic translation initiation factor 3, subunit B
novel_NIR_14765	chr5	140624343	140634460	-	140621821	140634460	A3SS	ENSMUST00000197452.5	novel	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000036565.8	Ttyh3	chr5	protein_coding	tweety family member 3
novel_NIR_14766	chr5	140624343	140634460	-	140634370	140634460	3pMXE	ENSMUST00000200302.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036565.8	Ttyh3	chr5	protein_coding	tweety family member 3
novel_NIR_14767	chr5	140666696	140668157	-	140666696	140669131	A5SS	ENSMUST00000129704.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	4	0	4	0	y	0.00	0	2	0	2	n	ENSMUSG00000036555.15	Iqce	chr5	protein_coding	IQ motif containing E
novel_NIR_14768	chr5	140666696	140668157	-	140666700	140668157	A3SS	ENSMUST00000041783.14	novel	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	17	0	17	n	-	-	-	-	-	-	0.09	1	10	1	10	n	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.07	1	14	1	14	n	0.40	4	6	4	6	y	0.00	0	13	0	13	n	ENSMUSG00000036555.15	Iqce	chr5	protein_coding	IQ motif containing E
novel_NIR_14769	chr5	140691851	140695619	+	140691851	140695893	A3SS	ENSMUST00000041588.13	novel	0.00	0	17	0	17	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.00	0	20	0	20	n	0.17	3	15	3	15	y	0.00	0	14	0	14	n	0.00	0	19	0	19	n	0.00	0	8	0	8	n	0.00	0	26	0	26	n	0.08	1	12	1	12	n	0.00	0	11	0	11	n	ENSMUSG00000000148.18	Brat1	chr5	protein_coding	BRCA1-associated ATM activator 1
novel_NIR_14770	chr5	140696047	140697264	+	140696047	140697261	A3SS	ENSMUST00000041588.13	novel	0.00	0	10	0	10	n	0.29	2	5	2	5	y	0.00	0	12	0	12	n	0.17	3	15	3	15	y	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.38	3	5	3	5	y	ENSMUSG00000000148.18	Brat1	chr5	protein_coding	BRCA1-associated ATM activator 1
novel_NIR_14771	chr5	140702549	140702704	+	140702549	140702684	A3SS	ENSMUST00000041588.13	novel	0.00	0	21	0	21	n	0.00	0	14	0	14	n	0.00	0	21	0	21	n	0.04	1	22	1	22	n	0.00	0	25	0	25	n	0.00	0	15	0	15	n	0.00	0	23	0	23	n	0.22	2	7	2	7	y	0.00	0	12	0	12	n	0.06	1	17	1	17	n	0.00	0	10	0	10	n	0.00	0	24	0	24	n	ENSMUSG00000000148.18	Brat1	chr5	protein_coding	BRCA1-associated ATM activator 1
novel_NIR_14772	chr5	140746873	140747069	-	140746873	140771152	A5SS	ENSMUST00000198447.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000000149.11	Gna12	chr5	protein_coding	guanine nucleotide binding protein, alpha 12
novel_NIR_14773	chr5	140746873	140747113	-	140746873	140771152	A5SS	ENSMUST00000198447.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000000149.11	Gna12	chr5	protein_coding	guanine nucleotide binding protein, alpha 12
novel_NIR_14774	chr5	141359585	141366516	-	141359168	141366516	A3SS	ENSMUST00000153879.2	novel	1.00	4	0	4	0	y	1.00	5	0	5	0	y	0.25	1	3	1	3	n	0.00	0	7	0	7	n	0.54	7	6	7	6	y	1.00	2	0	2	0	y	0.14	1	6	1	6	n	1.00	4	0	4	0	y	0.50	2	2	2	2	y	0.92	11	1	11	1	y	1.00	4	0	4	0	y	0.67	8	4	8	4	y	ENSMUSG00000084934.2	Gm16035	chr5	lncRNA	predicted gene 16035
novel_NIR_14775	chr5	141365994	141366516	-	141359168	141366516	A3SS	ENSMUST00000153879.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.25	1	3	1	3	n	0.12	1	7	1	7	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.75	3	1	3	1	y	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000084934.2	Gm16035	chr5	lncRNA	predicted gene 16035
novel_NIR_14776	chr5	142741414	142745580	-	142741414	142745466	A5SS	ENSMUST00000152247.8	novel	0.05	1	19	1	19	n	0.20	3	12	3	12	y	0.00	0	22	0	22	n	0.00	0	19	0	19	n	0.03	1	30	1	30	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.05	1	18	1	18	n	0.00	0	25	0	25	n	0.07	1	13	1	13	n	0.00	0	21	0	21	n	ENSMUSG00000039477.17	Tnrc18	chr5	protein_coding	trinucleotide repeat containing 18
novel_NIR_14777	chr5	142775944	142778760	-	142775944	142786058	A5SS	ENSMUST00000155461.2	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	9	0	9	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000039477.17	Tnrc18	chr5	protein_coding	trinucleotide repeat containing 18
novel_NIR_14778	chr5	142775944	142778760	-	142775944	142800770	A5SS	ENSMUST00000151477.8	novel	0.50	1	1	1	1	n	0.22	2	7	2	7	y	0.41	9	13	9	13	y	0.00	0	13	0	13	n	0.08	1	12	1	12	n	0.14	1	6	1	6	n	0.25	2	6	2	6	y	0.18	2	9	2	9	y	0.17	1	5	1	5	n	0.31	4	9	4	9	y	0.00	0	6	0	6	n	0.22	2	7	2	7	y	ENSMUSG00000039477.17	Tnrc18	chr5	protein_coding	trinucleotide repeat containing 18
novel_NIR_14779	chr5	142858268	142864413	-	142858275	142864413	A3SS	ENSMUST00000110766.8	novel	0.00	0	14	0	14	n	0.25	2	6	2	6	y	0.00	0	16	0	16	n	0.00	0	18	0	18	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	ENSMUSG00000066640.12	Fbxl18	chr5	protein_coding	F-box and leucine-rich repeat protein 18
novel_NIR_14780	chr5	142864631	142874424	-	142864631;142872837	142871294;142874424	ES	ENSMUST00000110766.8	novel	0.00	0	5.0	0	8;2	n	0.00	0	3.5	0	4;3	n	0.15	2	11.0	2	15;7	y	0.00	0	6.0	0	6;6	n	0.12	1	7.0	1	13;1	n	0.17	1	5.0	1	5;5	n	0.00	0	9.5	0	13;6	n	0.12	1	7.5	1	7;8	n	0.00	0	4.5	0	7;2	n	0.00	0	11.5	0	14;9	n	0.00	0	3.0	0	3;3	n	0.00	0	4.5	0	5;4	n	ENSMUSG00000066640.12	Fbxl18	chr5	protein_coding	F-box and leucine-rich repeat protein 18
novel_NIR_14781	chr5	143078905	143084134	-	143073376	143084134	A3SS	ENSMUST00000200430.5	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045078.13	Rnf216	chr5	protein_coding	ring finger protein 216
novel_NIR_14782	chr5	143078905	143084134	-	143076513	143084134	A3SS	ENSMUST00000198179.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045078.13	Rnf216	chr5	protein_coding	ring finger protein 216
novel_NIR_14783	chr5	143078905	143084134	-	143076684	143084134	A3SS	ENSMUST00000200002.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045078.13	Rnf216	chr5	protein_coding	ring finger protein 216
novel_NIR_14784	chr5	143300154	143300609	-	143300154	143300658	A5SS	ENSMUST00000159406.8	novel	0.09	2	21	2	21	n	0.04	1	25	1	25	n	0.08	2	22	2	22	n	0.24	9	28	9	28	y	0.03	1	38	1	38	n	0.09	3	29	3	29	n	0.14	4	25	4	25	n	0.15	3	17	3	17	y	0.15	3	17	3	17	y	0.10	3	26	3	26	n	0.05	2	40	2	40	n	0.00	0	38	0	38	n	ENSMUSG00000039244.11	E130309D02Rik	chr5	protein_coding	RIKEN cDNA E130309D02 gene
novel_NIR_14785	chr5	143315108	143317553	+	143315108	143316459	A3SS&ES	ENSMUST00000162890.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.17	1	5	1	5	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	ENSMUSG00000089889.3	0610040B10Rik	chr5	lncRNA	RIKEN cDNA 0610040B10 gene
novel_NIR_14786	chr5	143315108	143317553	+	143315108	143318066	A3SS	ENSMUST00000160231.2	novel	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.10	1	9	1	9	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	ENSMUSG00000089889.3	0610040B10Rik	chr5	lncRNA	RIKEN cDNA 0610040B10 gene
novel_NIR_14787	chr5	143316906	143318066	+	143315108	143318066	A5SS	ENSMUST00000160231.2	novel	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.67	2	1	2	1	n	0.50	1	1	1	1	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.17	1	5	1	5	n	ENSMUSG00000089889.3	0610040B10Rik	chr5	lncRNA	RIKEN cDNA 0610040B10 gene
novel_NIR_14788	chr5	143316906	143318066	+	143316640	143318066	A5SS	ENSMUST00000162890.2	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	0.14	2	12	2	12	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.20	1	4	1	4	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.09	1	10	1	10	n	ENSMUSG00000089889.3	0610040B10Rik	chr5	lncRNA	RIKEN cDNA 0610040B10 gene
novel_NIR_14789	chr5	143317676	143318066	+	143315108	143318066	A5SS	ENSMUST00000160231.2	novel	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.22	2	7	2	7	y	0.00	0	5	0	5	n	ENSMUSG00000089889.3	0610040B10Rik	chr5	lncRNA	RIKEN cDNA 0610040B10 gene
novel_NIR_14790	chr5	143317676	143318066	+	143316640	143318066	A5SS	ENSMUST00000162890.2	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	12	0	12	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.33	2	4	2	4	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.40	2	3	2	3	y	0.00	0	10	0	10	n	ENSMUSG00000089889.3	0610040B10Rik	chr5	lncRNA	RIKEN cDNA 0610040B10 gene
novel_NIR_14791	chr5	143389009	143389364	-	143377631	143389364	A3SS	ENSMUST00000176473.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000093720.2	Gm20635	chr5	lncRNA	predicted gene 20635
novel_NIR_14792	chr5	143389234	143389364	-	143377631	143389364	A3SS	ENSMUST00000176473.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000093720.2	Gm20635	chr5	lncRNA	predicted gene 20635
novel_NIR_14793	chr5	143502984	143514294	-	143502984	143503210	5pMXE	ENSMUST00000131513.2	novel	1.00	4	0	4	0	y	1.00	8	0	8	0	y	1.00	9	0	9	0	y	1.00	6	0	6	0	y	1.00	16	0	16	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	8	0	8	0	y	1.00	3	0	3	0	y	1.00	5	0	5	0	y	1.00	6	0	6	0	y	1.00	9	0	9	0	y	ENSMUSG00000001847.15	Rac1	chr5	protein_coding	Rac family small GTPase 1
novel_NIR_14794	chr5	143502984	143514294	-	143502984	143503812	5pMXE	ENSMUST00000145709.8	novel	1.00	4	0	4	0	y	1.00	8	0	8	0	y	1.00	9	0	9	0	y	1.00	6	0	6	0	y	1.00	16	0	16	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	8	0	8	0	y	1.00	3	0	3	0	y	1.00	5	0	5	0	y	1.00	6	0	6	0	y	1.00	9	0	9	0	y	ENSMUSG00000001847.15	Rac1	chr5	protein_coding	Rac family small GTPase 1
novel_NIR_14795	chr5	143502984	143514475	-	143502984	143503210	5pMXE	ENSMUST00000131513.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000001847.15	Rac1	chr5	protein_coding	Rac family small GTPase 1
novel_NIR_14796	chr5	143502984	143514475	-	143502984	143503812	5pMXE	ENSMUST00000145709.8	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000001847.15	Rac1	chr5	protein_coding	Rac family small GTPase 1
novel_NIR_14797	chr5	143928448	143929361	-	143928448	143929197	A5SS	ENSMUST00000200619.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029617.11	Ccz1	chr5	protein_coding	CCZ1 vacuolar protein trafficking and biogenesis associated
novel_NIR_14798	chr5	144071098	144080347	+	144071098	144080344	A3SS	ENSMUST00000041804.8	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.15	2	11	2	11	y	0.00	0	14	0	14	n	0.06	1	16	1	16	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.09	1	10	1	10	n	1.00	2	0	2	0	y	0.29	2	5	2	5	y	0.22	2	7	2	7	y	0.22	2	7	2	7	y	ENSMUSG00000038970.8	Lmtk2	chr5	protein_coding	lemur tyrosine kinase 2
novel_NIR_14799	chr5	144133069	144133165	-	144133069	144133170	A5SS	ENSMUST00000085701.7	novel	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	22	0	22	n	0.00	0	7	0	7	n	0.00	0	21	0	21	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	19	0	19	n	0.15	2	11	2	11	y	0.00	0	11	0	11	n	ENSMUSG00000066621.13	Tecpr1	chr5	protein_coding	tectonin beta-propeller repeat containing 1
novel_NIR_14800	chr5	144178900	144192320	-	144178900	144181243	5pMXE	ENSMUST00000124015.2	novel	0.80	4	1	4	1	y	0.00	0	1	0	1	n	0.50	2	2	2	2	y	1.00	2	0	2	0	y	-	-	-	-	-	-	0.20	1	4	1	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000087484.2	2900089D17Rik	chr5	lncRNA	RIKEN cDNA 2900089D17 gene
novel_NIR_14801	chr5	144178900	144192320	-	144178900	144192889	A5SS	ENSMUST00000153130.2	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000087484.2	2900089D17Rik	chr5	lncRNA	RIKEN cDNA 2900089D17 gene
novel_NIR_14802	chr5	144192722	144200269	+	144192722	144241830	A3SS	ENSMUST00000155491.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000047843.17	Bri3	chr5	protein_coding	brain protein I3
novel_NIR_14803	chr5	144223121	144294601	-	144223121	144225599	5pMXE	ENSMUST00000129287.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038859.8	Baiap2l1	chr5	protein_coding	BAI1-associated protein 2-like 1
novel_NIR_14804	chr5	144765439	144767716	+	144765456	144767716	A5SS	ENSMUST00000100467.10	novel	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.05	1	20	1	20	n	0.20	5	20	5	20	y	0.00	0	21	0	21	n	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.00	0	18	0	18	n	0.00	0	7	0	7	n	0.00	0	26	0	26	n	0.00	0	15	0	15	n	0.00	0	28	0	28	n	ENSMUSG00000045482.17	Trrap	chr5	protein_coding	transformation/transcription domain-associated protein
novel_NIR_14805	chr5	144780178	144781006	+	144780178	144781009	A3SS	ENSMUST00000100467.10	novel	0.08	2	24	2	24	n	0.24	4	13	4	13	y	0.31	8	18	8	18	y	0.12	3	21	3	21	n	0.00	0	24	0	24	n	0.00	0	17	0	17	n	0.16	6	31	6	31	y	0.16	3	16	3	16	y	0.05	1	19	1	19	n	0.32	10	21	10	21	y	0.38	5	8	5	8	y	0.30	6	14	6	14	y	ENSMUSG00000045482.17	Trrap	chr5	protein_coding	transformation/transcription domain-associated protein
novel_NIR_14806	chr5	144790434;144790935	144790858;144793697	+	144790434	144793697	cassetteExon	ENSMUST00000100467.10	novel	0.11	2.5	21	1;4	21	n	0.08	1.0	12	1;1	12	n	0.13	4.0	26	7;1	26	n	0.06	2.0	29	4;0	29	n	0.03	1.0	31	1;1	31	n	0.17	2.0	10	1;3	10	n	0.06	2.0	31	2;2	31	n	0.05	0.5	9	1;0	9	n	0.12	3.0	22	5;1	22	n	0.05	2.0	40	4;0	40	n	0.17	3.0	15	4;2	15	y	0.05	1.5	26	3;0	26	n	ENSMUSG00000045482.17	Trrap	chr5	protein_coding	transformation/transcription domain-associated protein
novel_NIR_14807	chr5	145034133	145037869	+	145034133	145035440	3pMXE	ENSMUST00000147564.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000029621.15	Arpc1a	chr5	protein_coding	actin related protein 2/3 complex, subunit 1A
novel_NIR_14808	chr5	145038198	145041252	+	145039182	145041252	A5SS&ES	ENSMUST00000127694.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000029621.15	Arpc1a	chr5	protein_coding	actin related protein 2/3 complex, subunit 1A
novel_NIR_14809	chr5	145114112	145115346	+	145114112	145115568	A3SS	ENSMUST00000160422.8	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	1.00	5	0	5	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000029625.17	Cpsf4	chr5	protein_coding	cleavage and polyadenylation specific factor 4
novel_NIR_14810	chr5	145114112	145115346	+	145114112	145115594	A3SS	ENSMUST00000160762.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029625.17	Cpsf4	chr5	protein_coding	cleavage and polyadenylation specific factor 4
novel_NIR_14811	chr5	145114112	145115346	+	145114112	145115643	A3SS	ENSMUST00000162244.8	novel	0.00	0	25	0	25	n	0.00	0	25	0	25	n	0.16	5	26	5	26	y	0.00	0	23	0	23	n	0.00	0	22	0	22	n	0.00	0	9	0	9	n	0.04	1	27	1	27	n	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.00	0	25	0	25	n	0.00	0	27	0	27	n	0.00	0	32	0	32	n	ENSMUSG00000029625.17	Cpsf4	chr5	protein_coding	cleavage and polyadenylation specific factor 4
novel_NIR_14812	chr5	145114112	145115346	+	145114112	145115646	A3SS	ENSMUST00000160629.8	novel	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.24	5	16	5	16	y	0.00	0	17	0	17	n	0.00	0	20	0	20	n	0.00	0	8	0	8	n	0.06	1	15	1	15	n	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.00	0	31	0	31	n	0.00	0	14	0	14	n	0.00	0	17	0	17	n	ENSMUSG00000029625.17	Cpsf4	chr5	protein_coding	cleavage and polyadenylation specific factor 4
novel_NIR_14813	chr5	145124043	145124655	-	145124043	145125003	A5SS	ENSMUST00000162360.8	novel	0.09	1	10	1	10	n	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.00	0	8	0	8	n	0.33	4	8	4	8	y	0.38	3	5	3	5	y	0.12	1	7	1	7	n	1.00	1	0	1	0	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.12	1	7	1	7	n	ENSMUSG00000038690.16	Atp5j2	chr5	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2
novel_NIR_14814	chr5	145144518	145148573	+	145144518	145147966	A3SS&ES	ENSMUST00000162168.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	0.00	0	2	0	2	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000055991.16	Zkscan5	chr5	protein_coding	zinc finger with KRAB and SCAN domains 5
novel_NIR_14815	chr5	145144518	145148573	+	145144518	145148556	A3SS	ENSMUST00000085671.10	novel	0.10	1	9	1	9	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.12	2	15	2	15	n	0.17	2	10	2	10	y	0.00	0	22	0	22	n	0.19	3	13	3	13	y	0.00	0	15	0	15	n	0.05	1	18	1	18	n	0.00	0	14	0	14	n	0.11	1	8	1	8	n	ENSMUSG00000055991.16	Zkscan5	chr5	protein_coding	zinc finger with KRAB and SCAN domains 5
novel_NIR_14816	chr5	145144518	145148573	+	145144518	145155097	A3SS	ENSMUST00000031601.8	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	1.00	2	0	2	0	y	-	-	-	-	-	-	0.75	3	1	3	1	y	0.00	0	2	0	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000055991.16	Zkscan5	chr5	protein_coding	zinc finger with KRAB and SCAN domains 5
novel_NIR_14817	chr5	145148107	145148573	+	145148107	145148556	A3SS	ENSMUST00000162168.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000055991.16	Zkscan5	chr5	protein_coding	zinc finger with KRAB and SCAN domains 5
novel_NIR_14818	chr5	145148638	145149318	+	145148638	145149299	A3SS	ENSMUST00000162168.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000055991.16	Zkscan5	chr5	protein_coding	zinc finger with KRAB and SCAN domains 5
novel_NIR_14819	chr5	145148638	145149318	+	145148638	145149315	A3SS	ENSMUST00000085671.10	novel	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	16	0	16	n	0.00	0	10	0	10	n	0.00	0	18	0	18	n	0.00	0	22	0	22	n	0.13	3	20	3	20	n	0.15	2	11	2	11	y	0.00	0	12	0	12	n	0.00	0	17	0	17	n	0.08	1	11	1	11	n	0.00	0	24	0	24	n	ENSMUSG00000055991.16	Zkscan5	chr5	protein_coding	zinc finger with KRAB and SCAN domains 5
novel_NIR_14820	chr5	145155530	145156863	+	145155693	145156863	A5SS	ENSMUST00000085671.10	novel	0.06	2	30	2	30	n	0.06	1	15	1	15	n	0.03	1	29	1	29	n	0.00	0	31	0	31	n	0.08	4	44	4	44	n	0.06	1	15	1	15	n	0.03	1	37	1	37	n	0.10	2	19	2	19	n	0.10	2	19	2	19	n	0.00	0	27	0	27	n	0.05	1	19	1	19	n	0.18	6	28	6	28	y	ENSMUSG00000055991.16	Zkscan5	chr5	protein_coding	zinc finger with KRAB and SCAN domains 5
novel_NIR_14821	chr5	145170412	145172133	+	145170412	145172547	A3SS	ENSMUST00000085661.9	novel	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.36	4	7	4	7	y	0.14	1	6	1	6	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000007812.17	Zfp655	chr5	protein_coding	zinc finger protein 655
novel_NIR_14822	chr5	145170412	145172133	+	145170412	145173860	A3SS	ENSMUST00000199003.5	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	1.00	4	0	4	0	y	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000007812.17	Zfp655	chr5	protein_coding	zinc finger protein 655
novel_NIR_14823	chr5	145174052	145179730	+	145170412	145179730	A5SS	ENSMUST00000167316.8	novel	0.25	3	9	3	9	y	0.00	0	15	0	15	n	0.00	0	29	0	29	n	0.00	0	24	0	24	n	0.04	1	22	1	22	n	0.00	0	6	0	6	n	0.11	2	17	2	17	n	0.20	3	12	3	12	y	0.11	2	16	2	16	n	0.11	3	25	3	25	n	0.00	0	15	0	15	n	0.00	0	31	0	31	n	ENSMUSG00000007812.17	Zfp655	chr5	protein_coding	zinc finger protein 655
novel_NIR_14824	chr5	145174052	145179730	+	145172201	145179730	A5SS	ENSMUST00000199322.5	novel	0.60	3	2	3	2	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.00	0	9	0	9	n	0.40	2	3	2	3	y	0.25	3	9	3	9	y	0.33	2	4	2	4	y	0.38	3	5	3	5	y	0.00	0	1	0	1	n	0.00	0	9	0	9	n	ENSMUSG00000007812.17	Zfp655	chr5	protein_coding	zinc finger protein 655
novel_NIR_14825	chr5	145217437	145220162	+	145217437	145220189	A3SS	ENSMUST00000200246.2	novel	0.75	6	2	6	2	y	1.00	3	0	3	0	y	1.00	8	0	8	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.75	6	2	6	2	y	0.33	3	6	3	6	y	0.75	3	1	3	1	y	0.60	3	2	3	2	y	0.75	3	1	3	1	y	0.64	7	4	7	4	y	0.89	8	1	8	1	y	ENSMUSG00000070420.5	Zscan25	chr5	protein_coding	zinc finger and SCAN domain containing 25
novel_NIR_14826	chr5	145914512	145914958	-	145914512	145918194	A5SS	ENSMUST00000145062.8	novel	0.27	433	1180	433	1180	n	0.24	308	996	308	996	n	0.56	131	104	131	104	y	0.21	272	1008	272	1008	n	0.38	651	1068	651	1068	n	0.50	173	174	173	174	n	0.33	544	1095	544	1095	n	0.47	178	199	178	199	n	0.34	966	1853	966	1853	n	0.33	864	1757	864	1757	n	0.32	1156	2496	1156	2496	n	0.27	841	2269	841	2269	n	ENSMUSG00000029630.16	Cyp3a25	chr5	protein_coding	cytochrome P450, family 3, subfamily a, polypeptide 25
novel_NIR_14827	chr5	145914512	145914958	-	145914512	145935297	A5SS	ENSMUST00000138870.2	novel	1.00	433	1	433	1	y	1.00	308	1	308	1	y	1.00	131	0	131	0	y	1.00	272	0	272	0	y	1.00	651	0	651	0	y	1.00	173	0	173	0	y	0.99	544	3	544	3	y	1.00	178	0	178	0	y	1.00	966	3	966	3	y	1.00	864	0	864	0	y	0.99	1156	10	1156	10	y	0.99	841	5	841	5	y	ENSMUSG00000029630.16	Cyp3a25	chr5	protein_coding	cytochrome P450, family 3, subfamily a, polypeptide 25
novel_NIR_14828	chr5	145914512	145918189	-	145914512	145935297	A5SS	ENSMUST00000138870.2	novel	0.50	1	1	1	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	3	0	3	0	y	0.23	3	10	3	10	y	0.00	0	5	0	5	n	ENSMUSG00000029630.16	Cyp3a25	chr5	protein_coding	cytochrome P450, family 3, subfamily a, polypeptide 25
novel_NIR_14829	chr5	145914512	145918273	-	145914512	145935297	A5SS	ENSMUST00000138870.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	10	0	10	n	0.00	0	5	0	5	n	ENSMUSG00000029630.16	Cyp3a25	chr5	protein_coding	cytochrome P450, family 3, subfamily a, polypeptide 25
novel_NIR_14830	chr5	145914512;145915137	145914958;145918194	-	145914512	145918194	cassetteExon	ENSMUST00000145062.8	novel	0.16	220.0	1180	433;7	1180	y	0.14	155.5	996	308;3	996	n	0.39	65.5	104	131;0	104	n	0.12	136.5	1008	272;1	1008	n	0.24	328.5	1068	651;6	1068	y	0.33	86.5	174	173;0	174	n	0.20	272.0	1095	544;0	1095	n	0.31	89.0	199	178;0	199	n	0.21	489.5	1853	966;13	1853	y	0.20	436.5	1757	864;9	1757	y	0.19	578.0	2496	1156;0	2496	n	0.16	426.0	2269	841;11	2269	y	ENSMUSG00000029630.16	Cyp3a25	chr5	protein_coding	cytochrome P450, family 3, subfamily a, polypeptide 25
novel_NIR_14831	chr5	145914512;145915157	145914958;145918194	-	145914512	145918194	cassetteExon	ENSMUST00000145062.8	novel	0.16	216.5	1180	433;0	1180	n	0.13	154.5	996	308;1	996	n	0.39	65.5	104	131;0	104	n	0.12	136.0	1008	272;0	1008	n	0.23	325.5	1068	651;0	1068	n	0.33	86.5	174	173;0	174	n	0.20	272.0	1095	544;0	1095	n	0.31	89.0	199	178;0	199	n	0.21	483.0	1853	966;0	1853	n	0.20	439.5	1757	864;15	1757	y	0.19	578.0	2496	1156;0	2496	n	0.16	420.5	2269	841;0	2269	n	ENSMUSG00000029630.16	Cyp3a25	chr5	protein_coding	cytochrome P450, family 3, subfamily a, polypeptide 25
novel_NIR_14832	chr5	145914512;145915172	145914958;145918194	-	145914512	145918194	cassetteExon	ENSMUST00000145062.8	novel	0.16	219.0	1180	433;5	1180	y	0.14	158.0	996	308;8	996	n	0.39	65.5	104	131;0	104	n	0.12	140.5	1008	272;9	1008	n	0.24	331.0	1068	651;11	1068	y	0.34	88.0	174	173;3	174	y	0.20	279.5	1095	544;15	1095	y	0.32	92.0	199	178;6	199	y	0.21	491.0	1853	966;16	1853	y	0.20	444.5	1757	864;25	1757	y	0.19	584.5	2496	1156;13	2496	y	0.16	432.5	2269	841;24	2269	y	ENSMUSG00000029630.16	Cyp3a25	chr5	protein_coding	cytochrome P450, family 3, subfamily a, polypeptide 25
novel_NIR_14833	chr5	145918356;145919415	145919294;145921680	-	145918356	145921680	cassetteExon	ENSMUST00000145062.8	novel	0.12	111.0	792	222;0	792	n	0.10	65.0	618	130;0	618	n	0.14	14.0	84	28;0	84	n	0.10	87.5	798	175;0	798	n	0.15	152.0	839	299;5	839	y	0.34	44.0	85	88;0	85	n	0.13	108.0	754	214;2	754	n	0.25	38.5	113	77;0	113	n	0.16	250.0	1267	492;8	1267	y	0.09	144.0	1404	288;0	1404	n	0.14	265.0	1606	530;0	1606	n	0.09	184.0	1861	368;0	1861	n	ENSMUSG00000029630.16	Cyp3a25	chr5	protein_coding	cytochrome P450, family 3, subfamily a, polypeptide 25
novel_NIR_14834	chr5	145918356;145919427	145919294;145921680	-	145918356	145921680	cassetteExon	ENSMUST00000145062.8	novel	0.13	120.0	792	222;18	792	n	0.11	74.0	618	130;18	618	n	0.14	14.0	84	28;0	84	n	0.11	102.5	798	175;30	798	n	0.17	174.0	839	299;49	839	y	0.37	49.5	85	88;11	85	y	0.14	119.5	754	214;25	754	n	0.28	43.0	113	77;9	113	y	0.18	277.0	1267	492;62	1267	y	0.10	162.0	1404	288;36	1404	n	0.16	298.5	1606	530;67	1606	y	0.11	223.0	1861	368;78	1861	n	ENSMUSG00000029630.16	Cyp3a25	chr5	protein_coding	cytochrome P450, family 3, subfamily a, polypeptide 25
novel_NIR_14835	chr5	145918356;145919445	145919294;145921680	-	145918356	145921680	cassetteExon	ENSMUST00000145062.8	novel	0.19	181.0	792	222;140	792	y	0.16	117.0	618	130;104	618	y	0.26	29.0	84	28;30	84	y	0.15	146.0	798	175;117	798	y	0.23	247.5	839	299;196	839	y	0.44	68.0	85	88;48	85	y	0.19	182.5	754	214;151	754	y	0.38	69.5	113	77;62	113	y	0.24	395.0	1267	492;298	1267	y	0.16	269.0	1404	288;250	1404	y	0.21	437.5	1606	530;345	1606	y	0.15	325.5	1861	368;283	1861	y	ENSMUSG00000029630.16	Cyp3a25	chr5	protein_coding	cytochrome P450, family 3, subfamily a, polypeptide 25
novel_NIR_14836	chr5	145932539	145935297	-	145914512	145935297	A3SS	ENSMUST00000138870.2	novel	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.79	11	3	11	3	y	1.00	4	0	4	0	y	0.38	6	10	6	10	y	0.62	8	5	8	5	y	ENSMUSG00000029630.16	Cyp3a25	chr5	protein_coding	cytochrome P450, family 3, subfamily a, polypeptide 25
novel_NIR_14837	chr5	145933021	145935297	-	145914512	145935297	A3SS	ENSMUST00000138870.2	novel	0.97	29	1	29	1	y	0.94	17	1	17	1	y	1.00	1	0	1	0	n	1.00	23	0	23	0	y	1.00	78	0	78	0	y	1.00	5	0	5	0	y	0.92	35	3	35	3	y	1.00	13	0	13	0	y	0.94	45	3	45	3	y	1.00	66	0	66	0	y	0.88	74	10	74	10	y	0.95	95	5	95	5	y	ENSMUSG00000029630.16	Cyp3a25	chr5	protein_coding	cytochrome P450, family 3, subfamily a, polypeptide 25
novel_NIR_14838	chr5	145933123	145935297	-	145914512	145935297	A3SS	ENSMUST00000138870.2	novel	0.86	6	1	6	1	y	0.88	7	1	7	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	12	0	12	0	y	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	0.75	9	3	9	3	y	1.00	9	0	9	0	y	0.66	19	10	19	10	y	0.38	3	5	3	5	y	ENSMUSG00000029630.16	Cyp3a25	chr5	protein_coding	cytochrome P450, family 3, subfamily a, polypeptide 25
novel_NIR_14839	chr5	145933803	145935297	-	145914512	145935297	A3SS	ENSMUST00000138870.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	0.17	2	10	2	10	y	0.00	0	5	0	5	n	ENSMUSG00000029630.16	Cyp3a25	chr5	protein_coding	cytochrome P450, family 3, subfamily a, polypeptide 25
novel_NIR_14840	chr5	146022660	146022739	+	146022660	146024181	A3SS	ENSMUST00000199212.5	novel	0.11	5	39	5	39	n	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.05	2	36	2	36	n	0.13	6	39	6	39	n	0.50	2	2	2	2	y	0.00	0	35	0	35	n	0.00	0	4	0	4	n	0.26	23	67	23	67	n	0.15	10	55	10	55	n	0.43	48	63	48	63	n	0.23	20	68	20	68	n	ENSMUSG00000061292.11	Cyp3a59	chr5	protein_coding	cytochrome P450, family 3, subfamily a, polypeptide 59
novel_NIR_14841	chr5	146022660;146022823	146022739;146024181	+	146022660	146024181	cassetteExon	ENSMUST00000199212.5	novel	0.09	4.0	39	5;3	39	n	0.03	0.5	14	0;1	14	n	0.25	2.0	6	0;4	6	n	0.04	1.5	36	2;1	36	n	0.11	5.0	39	6;4	39	n	0.33	1.0	2	2;0	2	n	0.01	0.5	35	0;1	35	n	0.00	0.0	4	0;0	4	n	0.28	26.5	67	23;30	67	y	0.15	9.5	55	10;9	55	y	0.41	44.0	63	48;40	63	y	0.18	15.0	68	20;10	68	y	ENSMUSG00000061292.11	Cyp3a59	chr5	protein_coding	cytochrome P450, family 3, subfamily a, polypeptide 59
novel_NIR_14842	chr5	146022823	146024181	+	146022660	146024181	A5SS	ENSMUST00000199212.5	novel	0.07	3	39	3	39	n	0.07	1	14	1	14	n	0.40	4	6	4	6	y	0.03	1	36	1	36	n	0.09	4	39	4	39	n	0.00	0	2	0	2	n	0.03	1	35	1	35	n	0.00	0	4	0	4	n	0.31	30	67	30	67	n	0.14	9	55	9	55	n	0.39	40	63	40	63	n	0.13	10	68	10	68	n	ENSMUSG00000061292.11	Cyp3a59	chr5	protein_coding	cytochrome P450, family 3, subfamily a, polypeptide 59
novel_NIR_14843	chr5	146031270;146032554	146032363;146033387	+	146031270	146033387	cassetteExon	ENSMUST00000199212.5	novel	1.00	3.5	0	5;2	0	y	1.00	0.5	0	0;1	0	n	-	-	-	-	-	-	1.00	2.5	0	0;5	0	n	0.67	2.0	1	0;4	1	n	-	-	-	-	-	-	0.50	1.0	1	0;2	1	n	-	-	-	-	-	-	0.68	8.5	4	2;15	4	y	0.33	1.5	3	0;3	3	n	0.68	6.5	3	7;6	3	y	1.00	2.0	0	1;3	0	n	ENSMUSG00000061292.11	Cyp3a59	chr5	protein_coding	cytochrome P450, family 3, subfamily a, polypeptide 59
novel_NIR_14844	chr5	146032554	146033387	+	146031270	146033387	A5SS	ENSMUST00000199212.5	novel	1.00	2	0	2	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	y	0.80	4	1	4	1	y	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.79	15	4	15	4	n	0.50	3	3	3	3	n	0.67	6	3	6	3	n	1.00	3	0	3	0	n	ENSMUSG00000061292.11	Cyp3a59	chr5	protein_coding	cytochrome P450, family 3, subfamily a, polypeptide 59
novel_NIR_14845	chr5	146222586	146222918	+	146208545	146222918	A5SS	ENSMUST00000162494.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029635.16	Cdk8	chr5	protein_coding	cyclin-dependent kinase 8
novel_NIR_14846	chr5	146223049	146231973	+	146223049	146225147	3pMXE	ENSMUST00000198861.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	ENSMUSG00000029635.16	Cdk8	chr5	protein_coding	cyclin-dependent kinase 8
novel_NIR_14847	chr5	146223049	146231973	+	146223049	146229464	3pMXE	ENSMUST00000161652.8	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.43	3	4	3	4	y	1.00	2	0	2	0	y	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.71	5	2	5	2	y	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.60	3	2	3	2	y	0.50	2	2	2	2	y	ENSMUSG00000029635.16	Cdk8	chr5	protein_coding	cyclin-dependent kinase 8
novel_NIR_14848	chr5	146691409	146705747	-	146691409	146694955	5pMXE	ENSMUST00000138202.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000029640.18	Usp12	chr5	protein_coding	ubiquitin specific peptidase 12
novel_NIR_14849	chr5	146691409	146705747	-	146691409	146695176	5pMXE	ENSMUST00000124009.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000029640.18	Usp12	chr5	protein_coding	ubiquitin specific peptidase 12
novel_NIR_14850	chr5	146691409	146705747	-	146691409;146700224	146700011;146705747	ES	ENSMUST00000085614.6	novel	0.00	0	15.0	0	16;14	n	0.00	0	15.0	0	18;12	n	0.15	6	35.0	6	36;34	y	0.07	2	27.5	2	33;22	n	0.00	0	48.5	0	51;46	n	0.00	0	21.5	0	22;21	n	0.05	1	21.0	1	21;21	n	0.06	1	16.5	1	21;12	n	0.00	0	21.5	0	27;16	n	0.00	0	39.0	0	47;31	n	0.07	1	14.0	1	21;7	n	0.04	1	27.0	1	29;25	n	ENSMUSG00000029640.18	Usp12	chr5	protein_coding	ubiquitin specific peptidase 12
novel_NIR_14851	chr5	146979308	147013209	-	146979308	147013228	A5SS	ENSMUST00000016664.8	novel	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.19	3	13	3	13	y	0.00	0	12	0	12	n	0.00	0	20	0	20	n	0.08	1	12	1	12	n	0.00	0	20	0	20	n	0.11	2	16	2	16	n	0.00	0	7	0	7	n	0.11	2	16	2	16	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	ENSMUSG00000016520.8	Lnx2	chr5	protein_coding	ligand of numb-protein X 2
novel_NIR_14852	chr5	147473350	147474014	+	147473350	147476053	A3SS	ENSMUST00000031651.15	novel	0.17	4	19	4	19	y	0.14	3	19	3	19	n	0.06	2	31	2	31	n	0.10	2	19	2	19	n	0.19	5	22	5	22	y	0.00	0	16	0	16	n	0.00	0	17	0	17	n	0.00	0	6	0	6	n	0.00	0	19	0	19	n	0.20	3	12	3	12	y	0.00	0	14	0	14	n	0.12	3	23	3	23	n	ENSMUSG00000029647.16	Pan3	chr5	protein_coding	PAN3 poly(A) specific ribonuclease subunit
novel_NIR_14853	chr5	147481442	147482416	+	147480018	147482416	A5SS	ENSMUST00000031651.15	novel	0.04	1	24	1	24	n	0.00	0	18	0	18	n	0.00	0	30	0	30	n	0.00	0	23	0	23	n	0.00	0	30	0	30	n	0.00	0	13	0	13	n	0.00	0	15	0	15	n	0.16	3	16	3	16	y	0.00	0	17	0	17	n	0.00	0	19	0	19	n	0.00	0	15	0	15	n	0.00	0	28	0	28	n	ENSMUSG00000029647.16	Pan3	chr5	protein_coding	PAN3 poly(A) specific ribonuclease subunit
novel_NIR_14854	chr5	147482545	147482650	+	147482545	147483175	A3SS	ENSMUST00000031651.15	novel	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	20	0	20	n	0.14	1	6	1	6	n	0.11	1	8	1	8	n	0.00	0	15	0	15	n	0.27	4	11	4	11	y	0.08	1	11	1	11	n	0.10	1	9	1	9	n	0.21	3	11	3	11	n	0.00	0	4	0	4	n	0.17	3	15	3	15	y	ENSMUSG00000029647.16	Pan3	chr5	protein_coding	PAN3 poly(A) specific ribonuclease subunit
novel_NIR_14855	chr5	147482545	147482650	+	147482545	147485018	A3SS	ENSMUST00000176553.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000029647.16	Pan3	chr5	protein_coding	PAN3 poly(A) specific ribonuclease subunit
novel_NIR_14856	chr5	147806322	147809376	+	147807277	147809376	5pMXE	ENSMUST00000202222.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029649.11	Pomp	chr5	protein_coding	proteasome maturation protein
novel_NIR_14857	chr5	147806323	147808118	+	147806323	147812274	A3SS	ENSMUST00000201376.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	ENSMUSG00000029649.11	Pomp	chr5	protein_coding	proteasome maturation protein
novel_NIR_14858	chr5	147806323	147820441	+	147806323	147812274	3pMXE	ENSMUST00000201376.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	ENSMUSG00000029649.11	Pomp	chr5	protein_coding	proteasome maturation protein
novel_NIR_14859	chr5	148448812	148484730	-	148448812	148474334	5pMXE	ENSMUST00000201688.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000001687.16	Ubl3	chr5	protein_coding	ubiquitin-like 3
novel_NIR_14860	chr5	148448812	148484730	-	148448812	148488269	A5SS	ENSMUST00000202938.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000001687.16	Ubl3	chr5	protein_coding	ubiquitin-like 3
novel_NIR_14861	chr5	148448812	148484730	-	148448812	148488315	A5SS	ENSMUST00000201139.4	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.33	1	2	1	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000001687.16	Ubl3	chr5	protein_coding	ubiquitin-like 3
novel_NIR_14862	chr5	148678794	148679581	+	148678794	148679545	A3SS	ENSMUST00000150265.2	novel	0.57	4	3	4	3	y	0.29	2	5	2	5	y	0.50	2	2	2	2	y	0.75	3	1	3	1	y	0.38	3	5	3	5	y	0.00	0	2	0	2	n	0.60	6	4	6	4	y	0.40	2	3	2	3	y	0.25	1	3	1	3	n	0.81	13	3	13	3	y	0.40	2	3	2	3	y	0.71	10	4	10	4	y	ENSMUSG00000086494.2	2210417A02Rik	chr5	lncRNA	RIKEN cDNA 2210417A02 gene
novel_NIR_14863	chr5	148896020	148896171	-	148896020	148896719	A5SS	ENSMUST00000203249.3	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	1.00	3	0	3	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	4	0	4	n	1.00	1	0	1	0	n	ENSMUSG00000108207.3	1810059H22Rik	chr5	lncRNA	RIKEN cDNA 1810059H22 gene
novel_NIR_14864	chr5	148896020	148896171	-	148896020	148900704	A5SS	ENSMUST00000203662.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	ENSMUSG00000108207.3	1810059H22Rik	chr5	lncRNA	RIKEN cDNA 1810059H22 gene
novel_NIR_14865	chr5	148896642	148898269	+	148896353	148898269	A5SS	ENSMUST00000135240.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000087272.2	Gm15409	chr5	lncRNA	predicted gene 15409
novel_NIR_14866	chr5	148936781	148939334	-	148936781	148952245	A5SS	ENSMUST00000133243.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000085971.5	Gm15411	chr5	lncRNA	predicted gene 15411
novel_NIR_14867	chr5	148936781	148939334	-	148936781	148952345	A5SS	ENSMUST00000201913.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000085971.5	Gm15411	chr5	lncRNA	predicted gene 15411
novel_NIR_14868	chr5	148987561	148988078	-	148987561	148988089	A5SS	ENSMUST00000093196.11	novel	0.33	6	12	6	12	y	0.26	5	14	5	14	y	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.33	9	18	9	18	y	0.00	0	9	0	9	n	0.15	4	23	4	23	y	0.07	1	13	1	13	n	0.33	8	16	8	16	y	0.00	0	19	0	19	n	0.13	2	13	2	13	n	0.15	2	11	2	11	y	ENSMUSG00000066551.13	Hmgb1	chr5	protein_coding	high mobility group box 1
novel_NIR_14869	chr5	148987561	148988078	-	148987561	148989148	A5SS	ENSMUST00000138553.8	novel	0.86	6	1	6	1	y	0.83	5	1	5	1	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	9	0	9	0	y	-	-	-	-	-	-	0.80	4	1	4	1	y	1.00	1	0	1	0	n	0.89	8	1	8	1	y	0.00	0	3	0	3	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	ENSMUSG00000066551.13	Hmgb1	chr5	protein_coding	high mobility group box 1
novel_NIR_14870	chr5	148987561	148988078	-	148987561	149118809	A5SS	ENSMUST00000202133.4	novel	1.00	6	0	6	0	y	1.00	5	0	5	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	9	0	9	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	0.33	1	2	1	2	n	1.00	8	0	8	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	ENSMUSG00000066551.13	Hmgb1	chr5	protein_coding	high mobility group box 1
novel_NIR_14871	chr5	149209290	149222154	+	149215915	149222154	5pMXE	ENSMUST00000200928.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000060063.10	Alox5ap	chr5	protein_coding	arachidonate 5-lipoxygenase activating protein
novel_NIR_14872	chr5	149663066	149664506	+	149663066	149668891	A3SS	ENSMUST00000100404.6	novel	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	1.00	1	0	1	0	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	ENSMUSG00000051950.11	B3glct	chr5	protein_coding	beta-3-glucosyltransferase
novel_NIR_14873	chr5	150500764	150515839	-	150500764	150517729	A5SS	ENSMUST00000202279.4	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.75	3	1	3	1	y	0.00	0	3	0	3	n	ENSMUSG00000041132.12	N4bp2l1	chr5	protein_coding	NEDD4 binding protein 2-like 1
novel_NIR_14874	chr5	150516683	150516825	-	150516683	150517729	A5SS	ENSMUST00000201319.2	novel	1.00	4	0	4	0	y	0.33	1	2	1	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.38	3	5	3	5	y	-	-	-	-	-	-	0.50	4	4	4	4	y	ENSMUSG00000041132.12	N4bp2l1	chr5	protein_coding	NEDD4 binding protein 2-like 1
novel_NIR_14875	chr5	150516683	150517160	-	150516683	150517729	A5SS	ENSMUST00000201319.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	5	0	5	n	1.00	2	0	2	0	y	0.00	0	4	0	4	n	ENSMUSG00000041132.12	N4bp2l1	chr5	protein_coding	NEDD4 binding protein 2-like 1
novel_NIR_14876	chr5	150531905	150533566	-	150531905	150566634	A5SS	ENSMUST00000164332.8	novel	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.18	2	9	2	9	y	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.27	4	11	4	11	y	0.00	0	10	0	10	n	0.00	0	14	0	14	n	ENSMUSG00000029655.18	N4bp2l2	chr5	protein_coding	NEDD4 binding protein 2-like 2
novel_NIR_14877	chr5	150566780	150570925	-	150566780	150574080	A5SS	ENSMUST00000156180.2	novel	0.50	3	3	3	3	y	0.00	0	4	0	4	n	0.86	6	1	6	1	y	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.54	7	6	7	6	y	0.50	2	2	2	2	y	1.00	5	0	5	0	y	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.75	3	1	3	1	y	ENSMUSG00000029655.18	N4bp2l2	chr5	protein_coding	NEDD4 binding protein 2-like 2
novel_NIR_14878	chr5	150566780	150574130	-	150566780	150574080	A5SS	ENSMUST00000156180.2	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.75	6	2	6	2	y	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	0.00	0	3	0	3	n	0.80	4	1	4	1	y	ENSMUSG00000029655.18	N4bp2l2	chr5	protein_coding	NEDD4 binding protein 2-like 2
novel_NIR_14879	chr5	150652439	150653072	+	150652439	150659744	A3SS	ENSMUST00000202170.4	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.20	1	4	1	4	n	ENSMUSG00000034021.16	Pds5b	chr5	protein_coding	PDS5 cohesin associated factor B
novel_NIR_14880	chr5	150716151	150717733	+	150716151;150717076	150717014;150717733	ES	ENSMUST00000202170.4	novel	0.00	0	15.0	0	14;16	n	0.00	0	8.5	0	6;11	n	0.19	3	12.5	3	13;12	y	0.00	0	24.0	0	22;26	n	0.11	2	17.0	2	16;18	n	0.00	0	12.0	0	13;11	n	0.00	0	17.5	0	17;18	n	0.00	0	8.0	0	6;10	n	0.00	0	10.0	0	6;14	n	0.00	0	20.5	0	15;26	n	0.13	2	13.0	2	12;14	n	0.05	1	20.0	1	19;21	n	ENSMUSG00000034021.16	Pds5b	chr5	protein_coding	PDS5 cohesin associated factor B
novel_NIR_14881	chr5	150716151	150717733	+	150717076	150717733	5pMXE	ENSMUST00000201920.2	novel	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.20	3	12	3	12	y	0.00	0	26	0	26	n	0.10	2	18	2	18	n	0.00	0	11	0	11	n	0.00	0	18	0	18	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	26	0	26	n	0.12	2	14	2	14	n	0.05	1	21	1	21	n	ENSMUSG00000034021.16	Pds5b	chr5	protein_coding	PDS5 cohesin associated factor B
novel_NIR_14882	chr5	150988646	150996766	-	150987121	150996766	A3SS	ENSMUST00000110483.9	novel	0.18	2	9	2	9	y	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	26	0	26	n	0.00	0	22	0	22	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.04	1	25	1	25	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	ENSMUSG00000016128.15	Stard13	chr5	protein_coding	StAR-related lipid transfer (START) domain containing 13
novel_NIR_14883	chr5	150992449	150996766	-	150987121	150996766	A3SS	ENSMUST00000110483.9	novel	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	26	0	26	n	0.00	0	22	0	22	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	15	0	15	n	0.19	3	13	3	13	y	0.00	0	25	0	25	n	0.00	0	10	0	10	n	0.06	1	15	1	15	n	ENSMUSG00000016128.15	Stard13	chr5	protein_coding	StAR-related lipid transfer (START) domain containing 13
novel_NIR_14884	chr5	151292635	151293050	-	151292635	151351584	A5SS	ENSMUST00000186838.2	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	ENSMUSG00000054622.5	D730045B01Rik	chr5	lncRNA	RIKEN cDNA D730045B01 gene
novel_NIR_14885	chr5	151330075	151331465	+	151323847	151331465	A5SS	ENSMUST00000202216.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000097321.6	1700028E10Rik	chr5	lncRNA	RIKEN cDNA 1700028E10 gene
novel_NIR_14886	chr5	151330082	151331465	+	151323847	151331465	A5SS	ENSMUST00000202216.2	novel	1.00	1	0	1	0	n	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	4	0	4	0	y	1.00	7	0	7	0	y	1.00	3	0	3	0	y	ENSMUSG00000097321.6	1700028E10Rik	chr5	lncRNA	RIKEN cDNA 1700028E10 gene
novel_NIR_14887	chr5	151330082	151331465	+	151330082	151331340	A3SS	ENSMUST00000201853.2	novel	0.09	1	10	1	10	n	0.35	6	11	6	11	y	-	-	-	-	-	-	0.19	3	13	3	13	y	0.25	4	12	4	12	y	-	-	-	-	-	-	0.11	1	8	1	8	n	0.00	0	8	0	8	n	0.25	5	15	5	15	y	0.14	4	24	4	24	n	0.37	7	12	7	12	y	0.23	3	10	3	10	y	ENSMUSG00000097321.6	1700028E10Rik	chr5	lncRNA	RIKEN cDNA 1700028E10 gene
novel_NIR_14888	chr5	151330082	151331465	+	151330082	151347978	A3SS	ENSMUST00000201142.4	novel	0.17	1	5	1	5	n	0.75	6	2	6	2	y	-	-	-	-	-	-	0.43	3	4	3	4	y	0.36	4	7	4	7	y	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	0.83	5	1	5	1	y	0.36	4	7	4	7	n	0.64	7	4	7	4	n	0.60	3	2	3	2	n	ENSMUSG00000097321.6	1700028E10Rik	chr5	lncRNA	RIKEN cDNA 1700028E10 gene
novel_NIR_14889	chr5	151330082	151337092	+	151330082	151331340	A3SS&ES	ENSMUST00000201853.2	novel	0.00	0	10	0	10	n	0.00	0	11	0	11	n	-	-	-	-	-	-	0.00	0	13	0	13	n	0.00	0	12	0	12	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.20	2	8	2	8	y	0.00	0	15	0	15	n	0.00	0	24	0	24	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	ENSMUSG00000097321.6	1700028E10Rik	chr5	lncRNA	RIKEN cDNA 1700028E10 gene
novel_NIR_14890	chr5	151330082	151337092	+	151330082	151347978	A3SS	ENSMUST00000201142.4	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000097321.6	1700028E10Rik	chr5	lncRNA	RIKEN cDNA 1700028E10 gene
novel_NIR_14891	chr5	151330082	151337092	+	151331532	151337092	A5SS&ES	ENSMUST00000202024.4	novel	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	16	0	16	n	0.20	2	8	2	8	y	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	ENSMUSG00000097321.6	1700028E10Rik	chr5	lncRNA	RIKEN cDNA 1700028E10 gene
novel_NIR_14892	chr5	151330082;151331532	151331465;151347978	+	151330082	151347978	cassetteExon	ENSMUST00000201142.4	novel	0.17	1.0	5	1;1	5	n	0.60	3.0	2	6;0	2	n	-	-	-	-	-	-	0.27	1.5	4	3;0	4	n	0.22	2.0	7	4;0	7	n	-	-	-	-	-	-	0.25	1.0	3	1;1	3	n	-	-	-	-	-	-	0.71	2.5	1	5;0	1	n	0.33	3.5	7	4;3	7	y	0.47	3.5	4	7;0	4	n	0.50	2.0	2	3;1	2	n	ENSMUSG00000097321.6	1700028E10Rik	chr5	lncRNA	RIKEN cDNA 1700028E10 gene
novel_NIR_14893	chr5	151330082;151331532	151331465;151353540	+	151330082;151351635	151347978;151353540	MXE	ENSMUST00000201142.4	novel	0.08	0.5	5.5	1;0	5;6	n	0.38	3.0	5.0	6;0	2;8	n	0.00	0.0	2.5	0;0	0;5	n	0.12	1.5	11.5	3;0	4;19	n	0.18	2.0	9.0	4;0	7;11	n	0.00	0.0	0.5	0;0	0;1	n	0.05	0.5	9.5	1;0	3;16	n	0.00	0.0	5.0	0;0	0;10	n	0.29	2.5	6.0	5;0	1;11	n	0.19	4.0	17.5	4;4	7;28	y	0.39	4.5	7.0	7;2	4;10	y	0.15	2.5	14.5	3;2	2;27	y	ENSMUSG00000097321.6	1700028E10Rik	chr5	lncRNA	RIKEN cDNA 1700028E10 gene
novel_NIR_14894	chr5	151331532	151347978	+	151331532	151337092	3pMXE	ENSMUST00000202024.4	novel	0.20	1	4	1	4	n	0.00	0	14	0	14	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.06	1	16	1	16	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.18	3	14	3	14	y	0.00	0	13	0	13	n	0.17	1	5	1	5	n	ENSMUSG00000097321.6	1700028E10Rik	chr5	lncRNA	RIKEN cDNA 1700028E10 gene
novel_NIR_14895	chr5	151331532	151347978	+	151331532	151351553	A3SS	ENSMUST00000201853.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.60	3	2	3	2	y	-	-	-	-	-	-	0.20	1	4	1	4	n	ENSMUSG00000097321.6	1700028E10Rik	chr5	lncRNA	RIKEN cDNA 1700028E10 gene
novel_NIR_14896	chr5	151331532	151353540	+	151331532	151337092	3pMXE	ENSMUST00000202024.4	novel	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.22	4	14	4	14	y	0.13	2	13	2	13	n	0.29	2	5	2	5	y	ENSMUSG00000097321.6	1700028E10Rik	chr5	lncRNA	RIKEN cDNA 1700028E10 gene
novel_NIR_14897	chr5	151331532	151353540	+	151331532;151351635	151351553;151353540	ES	ENSMUST00000201853.2	novel	0.00	0	3.0	0	0;6	n	0.00	0	4.0	0	0;8	n	0.00	0	2.5	0	0;5	n	0.00	0	10.5	0	2;19	n	0.00	0	6.5	0	2;11	n	0.00	0	0.5	0	0;1	n	0.00	0	9.0	0	2;16	n	0.00	0	5.5	0	1;10	n	0.00	0	5.5	0	0;11	n	0.21	4	15.0	4	2;28	y	0.29	2	5.0	2	0;10	y	0.11	2	15.5	2	4;27	n	ENSMUSG00000097321.6	1700028E10Rik	chr5	lncRNA	RIKEN cDNA 1700028E10 gene
novel_NIR_14898	chr5	151337320	151347978	+	151330082	151347978	A5SS	ENSMUST00000201142.4	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.20	1	4	1	4	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.36	4	7	4	7	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000097321.6	1700028E10Rik	chr5	lncRNA	RIKEN cDNA 1700028E10 gene
novel_NIR_14899	chr5	151348046;151349660	151349560;151351553	+	151348046	151351553	cassetteExon	ENSMUST00000201142.4	novel	0.50	4.0	4	1;7	4	n	0.50	2.0	2	0;4	2	n	1.00	1.0	0	1;1	0	n	0.41	5.5	8	6;5	8	y	1.00	1.5	0	1;2	0	n	0.50	1.0	1	1;1	1	n	0.65	5.5	3	6;5	3	y	0.50	1.0	1	1;1	1	n	0.11	0.5	4	1;0	4	n	0.44	8.5	11	6;11	11	y	0.29	2.5	6	3;2	6	y	0.33	3.5	7	4;3	7	y	ENSMUSG00000097321.6	1700028E10Rik	chr5	lncRNA	RIKEN cDNA 1700028E10 gene
novel_NIR_14900	chr5	151349660	151351553	+	151331532	151351553	A5SS	ENSMUST00000201853.2	novel	1.00	7	0	7	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	0.71	5	2	5	2	y	0.50	2	2	2	2	y	1.00	1	0	1	0	n	0.71	5	2	5	2	y	0.50	1	1	1	1	n	-	-	-	-	-	-	0.85	11	2	11	2	y	1.00	2	0	2	0	y	0.43	3	4	3	4	n	ENSMUSG00000097321.6	1700028E10Rik	chr5	lncRNA	RIKEN cDNA 1700028E10 gene
novel_NIR_14901	chr5	151349660	151351553	+	151348046	151351553	A5SS	ENSMUST00000201142.4	novel	0.64	7	4	7	4	n	0.67	4	2	4	2	y	1.00	1	0	1	0	n	0.38	5	8	5	8	n	1.00	2	0	2	0	n	0.50	1	1	1	1	n	0.62	5	3	5	3	n	0.50	1	1	1	1	n	0.00	0	4	0	4	n	0.50	11	11	11	11	n	0.25	2	6	2	6	n	0.30	3	7	3	7	n	ENSMUSG00000097321.6	1700028E10Rik	chr5	lncRNA	RIKEN cDNA 1700028E10 gene
novel_NIR_14902	chr5	18034547	18035428	-	18034547	18093709	A5SS	ENSMUST00000197574.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.20	2	8	2	8	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000002944.16	Cd36	chr5	protein_coding	CD36 molecule
novel_NIR_14903	chr5	21107453	21113105	-	21107453;21110920	21110778;21113105	ES	ENSMUST00000036489.10	novel	0.00	0	4.5	0	7;2	n	0.17	2	9.5	2	10;9	y	0.00	0	15.0	0	20;10	n	0.00	0	12.5	0	12;13	n	0.00	0	13.5	0	10;17	n	0.00	0	5.5	0	6;5	n	0.00	0	13.0	0	17;9	n	0.00	0	7.0	0	9;5	n	0.00	0	5.5	0	7;4	n	0.00	0	13.0	0	10;16	n	0.00	0	6.0	0	6;6	n	0.20	3	12.0	3	17;7	y	ENSMUSG00000039968.10	Rsbn1l	chr5	protein_coding	round spermatid basic protein 1-like
novel_NIR_14904	chr5	21113242	21132618	-	21113242;21125160	21124523;21132618	ES	ENSMUST00000036489.10	novel	0.00	0	3.5	0	4;3	n	0.00	0	5.5	0	3;8	n	0.00	0	5.5	0	5;6	n	0.00	0	10.0	0	8;12	n	0.22	4	14.5	4	19;10	y	0.00	0	5.0	0	1;9	n	0.00	0	9.5	0	8;11	n	0.00	0	7.0	0	7;7	n	0.00	0	4.0	0	4;4	n	0.29	2	5.0	2	7;3	y	0.15	1	5.5	1	5;6	n	0.13	1	6.5	1	6;7	n	ENSMUSG00000039968.10	Rsbn1l	chr5	protein_coding	round spermatid basic protein 1-like
novel_NIR_14905	chr5	21113242	21132618	-	21125160	21132618	3pMXE	ENSMUST00000197089.2	novel	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.29	4	10	4	10	y	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.40	2	3	2	3	y	0.14	1	6	1	6	n	0.12	1	7	1	7	n	ENSMUSG00000039968.10	Rsbn1l	chr5	protein_coding	round spermatid basic protein 1-like
novel_NIR_14906	chr5	21431346	21433022	+	21426293	21433022	A5SS	ENSMUST00000198071.5	novel	-	-	-	-	-	-	1.00	5	0	5	0	y	0.50	3	3	3	3	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	9	0	9	0	y	0.89	8	1	8	1	y	-	-	-	-	-	-	1.00	8	0	8	0	y	ENSMUSG00000039934.13	Gsap	chr5	protein_coding	gamma-secretase activating protein
novel_NIR_14907	chr5	21495142	21495554	+	21495142	21519852	A3SS	ENSMUST00000199553.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039934.13	Gsap	chr5	protein_coding	gamma-secretase activating protein
novel_NIR_14908	chr5	21664291	21692838	+	21664291	21685330	3pMXE	ENSMUST00000056045.5	novel	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.15	3	17	3	17	y	0.00	0	17	0	17	n	0.11	2	17	2	17	n	0.10	1	9	1	9	n	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.08	1	11	1	11	n	0.28	5	13	5	13	y	0.00	0	13	0	13	n	0.00	0	13	0	13	n	ENSMUSG00000047221.6	Fam185a	chr5	protein_coding	family with sequence similarity 185, member A
novel_NIR_14909	chr5	21858550	21861911	+	21858550	21865551	A3SS	ENSMUST00000148873.8	novel	0.00	0	21	0	21	n	0.00	0	19	0	19	n	0.00	0	26	0	26	n	0.04	1	27	1	27	n	0.00	0	31	0	31	n	0.00	0	13	0	13	n	0.06	2	29	2	29	n	0.07	1	13	1	13	n	0.00	0	15	0	15	n	0.10	2	19	2	19	n	0.00	0	27	0	27	n	0.21	5	19	5	19	y	ENSMUSG00000038525.17	Armc10	chr5	protein_coding	armadillo repeat containing 10
novel_NIR_14910	chr5	21888463	21906539	-	21888463	21905973	5pMXE	ENSMUST00000115217.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000044968.17	Napepld	chr5	protein_coding	N-acyl phosphatidylethanolamine phospholipase D
novel_NIR_14911	chr5	21888463	21906539	-	21888463	21906203	5pMXE	ENSMUST00000060899.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	4	0	4	0	y	-	-	-	-	-	-	0.25	1	3	1	3	n	0.50	2	2	2	2	y	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000044968.17	Napepld	chr5	protein_coding	N-acyl phosphatidylethanolamine phospholipase D
novel_NIR_14912	chr5	21942410	21943867	+	21943465	21943867	5pMXE	ENSMUST00000149648.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029017.14	Pmpcb	chr5	protein_coding	peptidase (mitochondrial processing) beta
novel_NIR_14913	chr5	22115111	22115811	-	22115114	22115811	A3SS	ENSMUST00000161356.8	novel	0.10	1	9	1	9	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.22	2	7	2	7	y	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.20	2	8	2	8	y	ENSMUSG00000042453.15	Reln	chr5	protein_coding	reelin
novel_NIR_14914	chr5	22733720	22734153	-	22733693	22734153	A3SS	ENSMUST00000051985.7	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000084235.3	Gm15421	chr5	transcribed_processed_pseudogene	predicted gene 15421
novel_NIR_14915	chr5	22753014	22754929	-	22753014	22754400	5pMXE	ENSMUST00000141263.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000029012.12	Orc5	chr5	protein_coding	origin recognition complex, subunit 5
novel_NIR_14916	chr5	23604964	23605884	-	23605186	23605884	A3SS	ENSMUST00000188328.2	novel	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000073147.4	5031425E22Rik	chr5	lncRNA	RIKEN cDNA 5031425E22 gene
novel_NIR_14917	chr5	23696632	23697266	+	23696611	23697266	A5SS	ENSMUST00000146375.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000029004.16	Kmt2e	chr5	protein_coding	lysine (K)-specific methyltransferase 2E
novel_NIR_14918	chr5	23703292	23704360	+	23703292	23703886	A3SS&ES	ENSMUST00000194010.2	novel	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000029004.16	Kmt2e	chr5	protein_coding	lysine (K)-specific methyltransferase 2E
novel_NIR_14919	chr5	23712718;23718580	23718488;23718950	-	23712718	23718950	cassetteExon	ENSMUST00000088392.9	novel	0.14	4.0	25	5;3	25	n	0.04	1.0	26	1;1	26	n	0.07	2.0	28	3;1	28	n	0.19	5.0	22	6;4	22	y	0.14	4.5	27	6;3	27	n	0.00	0.0	14	0;0	14	n	0.09	3.0	31	3;3	31	n	0.07	1.5	20	0;3	20	n	0.08	1.5	17	2;1	17	n	0.23	8.0	27	7;9	27	y	0.14	3.0	18	4;2	18	n	0.04	1.0	25	1;1	25	n	ENSMUSG00000062604.12	Srpk2	chr5	protein_coding	serine/arginine-rich protein specific kinase 2
novel_NIR_14920	chr5	23731813	23732922	-	23731813	23732895	A5SS	ENSMUST00000088392.9	novel	0.18	2	9	2	9	y	0.38	3	5	3	5	y	0.52	12	11	12	11	y	0.36	4	7	4	7	y	0.27	6	16	6	16	y	0.57	4	3	4	3	y	0.22	4	14	4	14	y	0.50	5	5	5	5	y	0.50	4	4	4	4	y	0.46	6	7	6	7	y	0.50	3	3	3	3	y	0.59	10	7	10	7	y	ENSMUSG00000062604.12	Srpk2	chr5	protein_coding	serine/arginine-rich protein specific kinase 2
novel_NIR_14921	chr5	23745575	23746107	-	23745501	23746107	A3SS	ENSMUST00000200173.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.90	9	1	9	1	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	4	0	4	0	y	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000062604.12	Srpk2	chr5	protein_coding	serine/arginine-rich protein specific kinase 2
novel_NIR_14922	chr5	23749610	23750521	-	23745479	23750521	A3SS	ENSMUST00000088392.9	novel	0.00	0	17	0	17	n	0.00	0	11	0	11	n	0.18	2	9	2	9	y	0.00	0	22	0	22	n	0.00	0	17	0	17	n	0.00	0	7	0	7	n	0.00	0	20	0	20	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	17	0	17	n	0.00	0	12	0	12	n	0.00	0	21	0	21	n	ENSMUSG00000062604.12	Srpk2	chr5	protein_coding	serine/arginine-rich protein specific kinase 2
novel_NIR_14923	chr5	23750608	23821325	-	23770263	23821325	3pMXE	ENSMUST00000198661.5	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.09	1	10	1	10	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	ENSMUSG00000062604.12	Srpk2	chr5	protein_coding	serine/arginine-rich protein specific kinase 2
novel_NIR_14924	chr5	23879998	23880718	-	23770263	23880718	A3SS	ENSMUST00000196929.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	ENSMUSG00000062604.12	Srpk2	chr5	protein_coding	serine/arginine-rich protein specific kinase 2
novel_NIR_14925	chr5	23879998	23880718	-	23829124	23880718	A3SS	ENSMUST00000196388.5	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	ENSMUSG00000062604.12	Srpk2	chr5	protein_coding	serine/arginine-rich protein specific kinase 2
novel_NIR_14926	chr5	23879998	23880718	-	23834475	23880718	A3SS	ENSMUST00000198661.5	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	ENSMUSG00000062604.12	Srpk2	chr5	protein_coding	serine/arginine-rich protein specific kinase 2
novel_NIR_14927	chr5	23908358	23915364	-	23905454	23915364	A3SS	ENSMUST00000198461.2	novel	1.00	12	0	12	0	y	1.00	6	0	6	0	y	1.00	21	0	21	0	y	1.00	8	0	8	0	y	1.00	39	0	39	0	y	1.00	8	0	8	0	y	1.00	12	0	12	0	y	1.00	10	0	10	0	y	1.00	10	0	10	0	y	1.00	8	0	8	0	y	-	-	-	-	-	-	1.00	8	0	8	0	y	ENSMUSG00000105987.5	AI506816	chr5	lncRNA	expressed sequence AI506816
novel_NIR_14928	chr5	23908358	23915364	-	23905471	23915364	A3SS	ENSMUST00000198984.5	novel	1.00	12	0	12	0	y	1.00	6	0	6	0	y	1.00	21	0	21	0	y	1.00	8	0	8	0	y	1.00	39	0	39	0	y	1.00	8	0	8	0	y	1.00	12	0	12	0	y	1.00	10	0	10	0	y	1.00	10	0	10	0	y	1.00	8	0	8	0	y	-	-	-	-	-	-	1.00	8	0	8	0	y	ENSMUSG00000105987.5	AI506816	chr5	lncRNA	expressed sequence AI506816
novel_NIR_14929	chr5	23908358	23915364	-	23908347	23915364	A3SS	ENSMUST00000199941.5	novel	1.00	12	0	12	0	y	1.00	6	0	6	0	y	1.00	21	0	21	0	y	1.00	8	0	8	0	y	0.87	39	6	39	6	y	1.00	8	0	8	0	y	1.00	12	0	12	0	y	0.91	10	1	10	1	y	1.00	10	0	10	0	y	1.00	8	0	8	0	y	-	-	-	-	-	-	1.00	8	0	8	0	y	ENSMUSG00000105987.5	AI506816	chr5	lncRNA	expressed sequence AI506816
novel_NIR_14930	chr5	23916148	23917322	-	23916148	23917640	A5SS	ENSMUST00000198984.5	novel	0.33	2	4	2	4	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000105987.5	AI506816	chr5	lncRNA	expressed sequence AI506816
novel_NIR_14931	chr5	23946971	23947342	-	23946974	23947342	A3SS	ENSMUST00000119946.8	novel	0.00	0	36	0	36	n	0.00	0	16	0	16	n	0.00	0	18	0	18	n	0.00	0	27	0	27	n	0.00	0	21	0	21	n	0.30	3	7	3	7	y	0.00	0	25	0	25	n	0.00	0	6	0	6	n	0.00	0	17	0	17	n	0.00	0	19	0	19	n	0.00	0	27	0	27	n	0.00	0	25	0	25	n	ENSMUSG00000057541.15	Pus7	chr5	protein_coding	pseudouridylate synthase 7
novel_NIR_14932	chr5	23993333	23993951	+	23993333	23998556	A3SS	ENSMUST00000117783.8	novel	0.50	1	1	1	1	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.50	3	3	3	3	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	4	0	4	n	ENSMUSG00000028999.16	Rint1	chr5	protein_coding	RAD50 interactor 1
novel_NIR_14933	chr5	24605678	24605742	+	24605678	24614511	A3SS	ENSMUST00000198166.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028973.19	Abcb8	chr5	protein_coding	ATP-binding cassette, sub-family B (MDR/TAP), member 8
novel_NIR_14934	chr5	24626033	24627330	-	24625803	24627330	A3SS	ENSMUST00000198990.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028969.11	Cdk5	chr5	protein_coding	cyclin-dependent kinase 5
novel_NIR_14935	chr5	24632634	24634418	+	24632634	24634414	A3SS	ENSMUST00000141966.8	novel	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	33	0	33	n	0.00	0	30	0	30	n	0.00	0	34	0	34	n	0.00	0	14	0	14	n	0.00	0	26	0	26	n	0.00	0	18	0	18	n	0.15	2	11	2	11	y	0.00	0	17	0	17	n	0.00	0	19	0	19	n	0.06	1	15	1	15	n	ENSMUSG00000028962.15	Slc4a2	chr5	protein_coding	solute carrier family 4 (anion exchanger), member 2
novel_NIR_14936	chr5	24644916	24645385	-	24644916	24646334	A5SS	ENSMUST00000115043.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000028959.15	Fastk	chr5	protein_coding	Fas-activated serine/threonine kinase
novel_NIR_14937	chr5	24647022	24647180	-	24647098	24647180	A3SS	ENSMUST00000134958.2	novel	0.00	0	23	0	23	n	0.00	0	23	0	23	n	0.00	0	21	0	21	n	0.00	0	12	0	12	n	0.00	0	25	0	25	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	16	0	16	n	0.00	0	15	0	15	n	0.27	4	11	4	11	y	ENSMUSG00000028959.15	Fastk	chr5	protein_coding	Fas-activated serine/threonine kinase
novel_NIR_14938	chr5	24648454	24649074	-	24648454	24650064	A5SS	ENSMUST00000115041.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000028959.15	Fastk	chr5	protein_coding	Fas-activated serine/threonine kinase
novel_NIR_14939	chr5	24685346	24688339	+	24685346	24687264	3pMXE	ENSMUST00000199250.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	3	3	3	3	y	1.00	1	0	1	0	n	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	ENSMUSG00000023353.15	Agap3	chr5	protein_coding	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3
novel_NIR_14940	chr5	24685571	24687264	+	24684787	24687264	A5SS	ENSMUST00000199647.2	novel	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.29	2	5	2	5	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	ENSMUSG00000023353.15	Agap3	chr5	protein_coding	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3
novel_NIR_14941	chr5	24685571	24687264	+	24685346	24687264	A5SS	ENSMUST00000199250.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000023353.15	Agap3	chr5	protein_coding	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3
novel_NIR_14942	chr5	24688157	24688339	+	24684787	24688339	A5SS	ENSMUST00000024123.9	novel	0.04	2	50	2	50	n	0.00	0	38	0	38	n	0.00	0	35	0	35	n	0.08	2	23	2	23	n	0.17	8	40	8	40	y	0.00	0	20	0	20	n	0.04	2	53	2	53	n	0.09	3	29	3	29	n	0.00	0	21	0	21	n	0.09	4	41	4	41	n	0.05	2	39	2	39	n	0.12	6	42	6	42	n	ENSMUSG00000023353.15	Agap3	chr5	protein_coding	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3
novel_NIR_14943	chr5	24698124	24704423	+	24698124	24701731	A3SS&ES	ENSMUST00000024123.9	novel	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.25	2	6	2	6	y	0.00	0	4	0	4	n	0.00	0	16	0	16	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	11	0	11	n	ENSMUSG00000023353.15	Agap3	chr5	protein_coding	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3
novel_NIR_14944	chr5	24698124	24704658	+	24698124	24701731	A3SS&ES	ENSMUST00000024123.9	novel	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	16	0	16	n	0.50	2	2	2	2	y	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	11	0	11	n	ENSMUSG00000023353.15	Agap3	chr5	protein_coding	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3
novel_NIR_14945	chr5	24698124	24704662	+	24698124	24701731	A3SS&ES	ENSMUST00000024123.9	novel	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.40	4	6	4	6	y	0.00	0	4	0	4	n	0.00	0	16	0	16	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	11	0	11	n	ENSMUSG00000023353.15	Agap3	chr5	protein_coding	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3
novel_NIR_14946	chr5	24781725	24782024	-	24781725	24782345	A5SS	ENSMUST00000030795.10	novel	0.35	9	17	9	17	y	0.17	4	20	4	20	y	0.11	6	51	6	51	n	0.17	7	33	7	33	y	0.15	7	41	7	41	y	0.07	2	28	2	28	n	0.11	5	42	5	42	n	0.03	1	29	1	29	n	0.12	3	22	3	22	n	0.32	16	34	16	34	y	0.16	4	21	4	21	y	0.17	8	38	8	38	y	ENSMUSG00000028953.11	Abcf2	chr5	protein_coding	ATP-binding cassette, sub-family F (GCN20), member 2
novel_NIR_14947	chr5	24792124	24797753	+	24792124	24793073	3pMXE	ENSMUST00000197566.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038181.17	Chpf2	chr5	protein_coding	chondroitin polymerizing factor 2
novel_NIR_14948	chr5	24891092	24894391	+	24891020	24894391	A5SS	ENSMUST00000197407.5	novel	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.36	4	7	4	7	y	0.14	1	6	1	6	n	0.00	0	19	0	19	n	0.00	0	10	0	10	n	0.06	1	15	1	15	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	ENSMUSG00000028954.12	Nub1	chr5	protein_coding	negative regulator of ubiquitin-like proteins 1
novel_NIR_14949	chr5	24892502	24894391	+	24891020	24894391	A5SS	ENSMUST00000197407.5	novel	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	19	0	19	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.33	2	4	2	4	y	ENSMUSG00000028954.12	Nub1	chr5	protein_coding	negative regulator of ubiquitin-like proteins 1
novel_NIR_14950	chr5	24927774	24931355	-	24927774	24935179	A5SS	ENSMUST00000068693.12	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000055235.12	Wdr86	chr5	protein_coding	WD repeat domain 86
novel_NIR_14951	chr5	25113390	25149067	-	25113390	25113863	5pMXE	ENSMUST00000123749.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028944.15	Prkag2	chr5	protein_coding	protein kinase, AMP-activated, gamma 2 non-catalytic subunit
novel_NIR_14952	chr5	25152636	25226342	-	25152636	25200260	5pMXE	ENSMUST00000076306.12	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028944.15	Prkag2	chr5	protein_coding	protein kinase, AMP-activated, gamma 2 non-catalytic subunit
novel_NIR_14953	chr5	25152636	25226764	-	25152636	25200260	5pMXE	ENSMUST00000076306.12	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000028944.15	Prkag2	chr5	protein_coding	protein kinase, AMP-activated, gamma 2 non-catalytic subunit
novel_NIR_14954	chr5	25309825	25312151	+	25309825	25314182	A3SS	ENSMUST00000128569.2	novel	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000043833.7	2900005J15Rik	chr5	lncRNA	RIKEN cDNA 2900005J15 gene
novel_NIR_14955	chr5	25313625	25314182	+	25309825	25314182	A5SS	ENSMUST00000128569.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000043833.7	2900005J15Rik	chr5	lncRNA	RIKEN cDNA 2900005J15 gene
novel_NIR_14956	chr5	25314066	25314182	+	25309825	25314182	A5SS	ENSMUST00000128569.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000043833.7	2900005J15Rik	chr5	lncRNA	RIKEN cDNA 2900005J15 gene
novel_NIR_14957	chr5	25498246	25499555	-	25498174	25499555	A3SS	ENSMUST00000174734.8	novel	1.00	6	0	6	0	y	1.00	5	0	5	0	y	0.88	7	1	7	1	y	0.91	10	1	10	1	y	1.00	13	0	13	0	y	0.67	2	1	2	1	y	1.00	5	0	5	0	y	1.00	6	0	6	0	y	0.50	2	2	2	2	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	0.57	4	3	4	3	y	ENSMUSG00000038056.16	Kmt2c	chr5	protein_coding	lysine (K)-specific methyltransferase 2C
novel_NIR_14958	chr5	25498246	25499555	-	25498246	25500396	A5SS	ENSMUST00000045291.14	novel	1.00	6	0	6	0	n	1.00	5	0	5	0	y	1.00	7	0	7	0	y	1.00	10	0	10	0	y	1.00	13	0	13	0	n	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	6	0	6	0	y	1.00	2	0	2	0	n	1.00	3	0	3	0	n	0.67	2	1	2	1	y	1.00	4	0	4	0	y	ENSMUSG00000038056.16	Kmt2c	chr5	protein_coding	lysine (K)-specific methyltransferase 2C
novel_NIR_14959	chr5	25498246	25499555	-	25498246	25503868	A5SS	ENSMUST00000172556.8	novel	0.86	6	1	6	1	y	0.83	5	1	5	1	y	0.78	7	2	7	2	y	0.91	10	1	10	1	y	0.93	13	1	13	1	y	0.40	2	3	2	3	y	0.71	5	2	5	2	y	0.86	6	1	6	1	y	0.50	2	2	2	2	y	0.60	3	2	3	2	y	0.50	2	2	2	2	y	0.80	4	1	4	1	y	ENSMUSG00000038056.16	Kmt2c	chr5	protein_coding	lysine (K)-specific methyltransferase 2C
novel_NIR_14960	chr5	25498246;25499648	25499555;25500396	-	25498246	25500396	cassetteExon	ENSMUST00000045291.14	novel	1.00	3.5	0	6;1	0	n	1.00	2.5	0	5;0	0	n	1.00	3.5	0	7;0	0	n	1.00	5.0	0	10;0	0	n	1.00	6.5	0	13;0	0	n	1.00	1.0	0	2;0	0	n	1.00	2.5	0	5;0	0	n	1.00	3.0	0	6;0	0	n	1.00	1.5	0	2;1	0	n	1.00	2.5	0	3;2	0	y	0.50	1.0	1	2;0	1	n	1.00	2.0	0	4;0	0	n	ENSMUSG00000038056.16	Kmt2c	chr5	protein_coding	lysine (K)-specific methyltransferase 2C
novel_NIR_14961	chr5	25498246;25499716	25499555;25500396	-	25498246	25500396	cassetteExon	ENSMUST00000045291.14	novel	1.00	3.0	0	6;0	0	n	1.00	2.5	0	5;0	0	n	1.00	3.5	0	7;0	0	n	1.00	5.0	0	10;0	0	n	1.00	7.5	0	13;2	0	y	1.00	1.0	0	2;0	0	n	1.00	2.5	0	5;0	0	n	1.00	3.0	0	6;0	0	n	1.00	1.0	0	2;0	0	n	1.00	1.5	0	3;0	0	n	0.50	1.0	1	2;0	1	n	1.00	2.0	0	4;0	0	n	ENSMUSG00000038056.16	Kmt2c	chr5	protein_coding	lysine (K)-specific methyltransferase 2C
novel_NIR_14962	chr5	25499648	25500396	-	25499719	25500396	A3SS	ENSMUST00000174734.8	novel	0.07	1	13	1	13	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.22	2	7	2	7	y	0.00	0	1	0	1	n	0.00	0	9	0	9	n	ENSMUSG00000038056.16	Kmt2c	chr5	protein_coding	lysine (K)-specific methyltransferase 2C
novel_NIR_14963	chr5	25499716	25500396	-	25499719	25500396	A3SS	ENSMUST00000174734.8	novel	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.20	2	8	2	8	y	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	ENSMUSG00000038056.16	Kmt2c	chr5	protein_coding	lysine (K)-specific methyltransferase 2C
novel_NIR_14964	chr5	25620024	25648818	-	25620021	25648818	A3SS	ENSMUST00000045291.14	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	1	0	1	n	ENSMUSG00000038056.16	Kmt2c	chr5	protein_coding	lysine (K)-specific methyltransferase 2C
novel_NIR_14965	chr5	27980677	27988679	-	27980677	27986420	A5SS&ES	ENSMUST00000002291.12	novel	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.33	6	12	6	12	y	0.00	0	15	0	15	n	0.04	1	24	1	24	n	0.00	0	10	0	10	n	0.15	3	17	3	17	y	0.20	2	8	2	8	y	0.00	0	8	0	8	n	0.00	0	21	0	21	n	0.00	0	12	0	12	n	0.04	1	23	1	23	n	ENSMUSG00000002221.12	Paxip1	chr5	protein_coding	PAX interacting (with transcription-activation domain) protein 1
novel_NIR_14966	chr5	27980677	27988679	-	27980677;27986483	27986420;27988679	ES	ENSMUST00000196734.2	novel	0.00	0	6.0	0	12;0	n	0.00	0	8.0	0	15;1	n	0.50	6	6.0	6	12;0	y	0.00	0	8.0	0	15;1	n	0.06	1	15.0	1	24;6	n	0.00	0	5.0	0	10;0	n	0.25	3	9.0	3	17;1	y	0.33	2	4.0	2	8;0	y	0.00	0	4.5	0	8;1	n	0.00	0	10.5	0	21;0	n	0.00	0	8.0	0	12;4	n	0.08	1	11.5	1	23;0	n	ENSMUSG00000002221.12	Paxip1	chr5	protein_coding	PAX interacting (with transcription-activation domain) protein 1
novel_NIR_14967	chr5	27993775	27996457	-	27993775	27996197	A5SS	ENSMUST00000002291.12	novel	0.00	0	17	0	17	n	0.00	0	5	0	5	n	0.00	0	23	0	23	n	0.00	0	20	0	20	n	0.05	1	21	1	21	n	0.00	0	6	0	6	n	0.00	0	24	0	24	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	22	0	22	n	0.18	2	9	2	9	y	0.00	0	18	0	18	n	ENSMUSG00000002221.12	Paxip1	chr5	protein_coding	PAX interacting (with transcription-activation domain) protein 1
novel_NIR_14968	chr5	27993775	27996457	-	27993775	27996525	A5SS	ENSMUST00000199993.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000002221.12	Paxip1	chr5	protein_coding	PAX interacting (with transcription-activation domain) protein 1
novel_NIR_14969	chr5	28225684	28252115	-	28225684	28259684	A5SS	ENSMUST00000180740.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000097673.2	Gm26608	chr5	lncRNA	predicted gene, 26608
novel_NIR_14970	chr5	28260113	28260337	-	28260113	28260261	A5SS	ENSMUST00000181503.2	novel	0.17	1	5	1	5	n	0.14	1	6	1	6	n	0.38	5	8	5	8	y	0.00	0	5	0	5	n	0.08	1	12	1	12	n	0.10	2	19	2	19	n	0.40	2	3	2	3	y	0.28	8	21	8	21	y	0.00	0	8	0	8	n	0.14	2	12	2	12	n	0.21	3	11	3	11	y	0.00	0	13	0	13	n	ENSMUSG00000097673.2	Gm26608	chr5	lncRNA	predicted gene, 26608
novel_NIR_14971	chr5	28260113	28260337	-	28260113	28275802	A5SS	ENSMUST00000180740.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	8	0	8	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000097673.2	Gm26608	chr5	lncRNA	predicted gene, 26608
novel_NIR_14972	chr5	29438146	29439811	-	29438146	29439976	A5SS	ENSMUST00000055195.11	novel	0.00	0	6	0	6	n	0.50	3	3	3	3	y	0.00	0	6	0	6	n	0.08	1	12	1	12	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.06	1	15	1	15	n	0.21	3	11	3	11	y	0.00	0	10	0	10	n	ENSMUSG00000010721.16	Lmbr1	chr5	protein_coding	limb region 1
novel_NIR_14973	chr5	29438146	29439811	-	29438146	29457741	A5SS	ENSMUST00000200564.5	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000010721.16	Lmbr1	chr5	protein_coding	limb region 1
novel_NIR_14974	chr5	29439908	29439976	-	29438146	29439976	A3SS	ENSMUST00000055195.11	novel	0.14	1	6	1	6	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.15	2	11	2	11	y	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.00	0	11	0	11	n	0.09	1	10	1	10	n	ENSMUSG00000010721.16	Lmbr1	chr5	protein_coding	limb region 1
novel_NIR_14975	chr5	29439908	29457741	-	29438146	29457741	A3SS	ENSMUST00000200564.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000010721.16	Lmbr1	chr5	protein_coding	limb region 1
novel_NIR_14976	chr5	29439908	29457741	-	29440137	29457741	A3SS&ES	ENSMUST00000055195.11	novel	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.22	2	7	2	7	y	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	16	0	16	n	ENSMUSG00000010721.16	Lmbr1	chr5	protein_coding	limb region 1
novel_NIR_14977	chr5	29459294	29463056	-	29459617	29463056	A3SS&ES	ENSMUST00000055195.11	novel	0.00	0	7	0	7	n	0.11	1	8	1	8	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.20	1	4	1	4	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.30	3	7	3	7	y	ENSMUSG00000010721.16	Lmbr1	chr5	protein_coding	limb region 1
novel_NIR_14978	chr5	29479296	29492389	-	29468473	29492389	A3SS	ENSMUST00000055195.11	novel	0.29	2	5	2	5	y	0.33	2	4	2	4	y	0.10	1	9	1	9	n	0.00	0	12	0	12	n	0.05	1	20	1	20	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.09	1	10	1	10	n	0.43	6	8	6	8	y	0.00	0	7	0	7	n	0.33	3	6	3	6	y	ENSMUSG00000010721.16	Lmbr1	chr5	protein_coding	limb region 1
novel_NIR_14979	chr5	29486431	29492389	-	29468473	29492389	A3SS	ENSMUST00000055195.11	novel	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.09	2	20	2	20	n	0.00	0	12	0	12	n	0.17	2	10	2	10	y	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.11	1	8	1	8	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	ENSMUSG00000010721.16	Lmbr1	chr5	protein_coding	limb region 1
novel_NIR_14980	chr5	29497218	29497839	-	29497218	29497821	A5SS	ENSMUST00000055195.11	novel	0.09	1	10	1	10	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.04	1	25	1	25	n	0.00	0	5	0	5	n	0.15	2	11	2	11	y	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.06	1	16	1	16	n	ENSMUSG00000010721.16	Lmbr1	chr5	protein_coding	limb region 1
novel_NIR_14981	chr5	29792326	29794890	+	29792326	29794886	A3SS	ENSMUST00000049453.9	novel	0.00	0	16	0	16	n	0.21	3	11	3	11	y	0.03	1	39	1	39	n	0.00	0	42	0	42	n	0.04	2	50	2	50	n	0.00	0	27	0	27	n	0.03	1	33	1	33	n	0.00	0	29	0	29	n	0.00	0	24	0	24	n	0.00	0	46	0	46	n	0.00	0	17	0	17	n	0.00	0	22	0	22	n	ENSMUSG00000039000.9	Ube3c	chr5	protein_coding	ubiquitin protein ligase E3C
novel_NIR_14982	chr5	29941114	29955936	+	29941114	29944058	3pMXE	ENSMUST00000127753.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029131.15	Dnajb6	chr5	protein_coding	DnaJ heat shock protein family (Hsp40) member B6
novel_NIR_14983	chr5	29946337	29953343	+	29942387	29953343	A5SS	ENSMUST00000196785.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029131.15	Dnajb6	chr5	protein_coding	DnaJ heat shock protein family (Hsp40) member B6
novel_NIR_14984	chr5	29971393	29982853	+	29971393	30022919	A3SS	ENSMUST00000196528.5	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000029131.15	Dnajb6	chr5	protein_coding	DnaJ heat shock protein family (Hsp40) member B6
novel_NIR_14985	chr5	30269184	30274832	-	30269184	30276632	A5SS	ENSMUST00000196095.5	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025747.13	Tyms	chr5	protein_coding	thymidylate synthase
novel_NIR_14986	chr5	30269184	30274832	-	30269184	30278359	A5SS	ENSMUST00000196872.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025747.13	Tyms	chr5	protein_coding	thymidylate synthase
novel_NIR_14987	chr5	30269184	30274832	-	30269184;30273638	30273464;30274832	ES	ENSMUST00000141630.8	novel	0.00	0	9.5	0	19;0	n	0.00	0	11.5	0	23;0	n	0.00	0	9.0	0	18;0	n	0.00	0	13.0	0	25;1	n	0.00	0	14.5	0	29;0	n	0.00	0	3.0	0	6;0	n	0.00	0	17.5	0	33;2	n	0.25	2	6.0	2	12;0	y	0.00	0	14.5	0	29;0	n	0.00	0	19.5	0	39;0	n	0.00	0	23.0	0	46;0	n	0.00	0	10.5	0	20;1	n	ENSMUSG00000025747.13	Tyms	chr5	protein_coding	thymidylate synthase
novel_NIR_14988	chr5	30339172	30339977	-	30339137	30339977	A3SS	ENSMUST00000196946.6	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000025745.13	Hadha	chr5	protein_coding	hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha
novel_NIR_14989	chr5	30365046	30368667	+	30360384	30368667	A5SS	ENSMUST00000114783.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.20	1	4	1	4	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	6	3	6	3	y	0.00	0	2	0	2	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.50	4	4	4	4	y	ENSMUSG00000059447.14	Hadhb	chr5	protein_coding	hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta
novel_NIR_14990	chr5	30491473	30500012	+	30499095	30500012	A5SS&ES	ENSMUST00000101448.5	novel	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000073102.8	Drc1	chr5	protein_coding	dynein regulatory complex subunit 1
novel_NIR_14991	chr5	30491473	30500012	+	30499252	30500012	5pMXE	ENSMUST00000200399.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000073102.8	Drc1	chr5	protein_coding	dynein regulatory complex subunit 1
novel_NIR_14992	chr5	30805442	30808412	+	30805442	30808346	A3SS	ENSMUST00000196740.5	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029175.18	Slc35f6	chr5	protein_coding	solute carrier family 35, member F6
novel_NIR_14993	chr5	30805442	30808412	+	30805442	30812839	A3SS	ENSMUST00000143867.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029175.18	Slc35f6	chr5	protein_coding	solute carrier family 35, member F6
novel_NIR_14994	chr5	30805442	30811994	+	30805442	30808346	A3SS&ES	ENSMUST00000196740.5	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029175.18	Slc35f6	chr5	protein_coding	solute carrier family 35, member F6
novel_NIR_14995	chr5	30805442	30811994	+	30805442	30812839	A3SS	ENSMUST00000143867.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029175.18	Slc35f6	chr5	protein_coding	solute carrier family 35, member F6
novel_NIR_14996	chr5	30809163	30812092	+	30808722	30812092	A5SS	ENSMUST00000196740.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000029175.18	Slc35f6	chr5	protein_coding	solute carrier family 35, member F6
novel_NIR_14997	chr5	31082199	31084090	+	31082199	31085787	A3SS	ENSMUST00000201571.4	novel	0.00	0	9	0	9	n	0.06	1	16	1	16	n	0.10	2	18	2	18	n	0.08	1	11	1	11	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.17	3	15	3	15	y	0.00	0	6	0	6	n	0.09	1	10	1	10	n	0.07	1	13	1	13	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	ENSMUSG00000029162.16	Khk	chr5	protein_coding	ketohexokinase
novel_NIR_14998	chr5	31082199	31084345	+	31082199	31084032	A3SS&ES	ENSMUST00000031053.15	novel	0.32	15	32	15	32	y	0.35	14	26	14	26	y	0.38	20	32	20	32	y	0.24	11	34	11	34	y	0.42	14	19	14	19	y	0.48	13	14	13	14	y	0.27	15	40	15	40	y	0.45	9	11	9	11	y	0.18	9	41	9	41	y	0.32	23	50	23	50	y	0.24	12	38	12	38	y	0.39	27	42	27	42	y	ENSMUSG00000029162.16	Khk	chr5	protein_coding	ketohexokinase
novel_NIR_14999	chr5	31082199	31084345	+	31082199	31085787	A3SS	ENSMUST00000201571.4	novel	0.62	15	9	15	9	y	0.47	14	16	14	16	y	0.53	20	18	20	18	y	0.50	11	11	11	11	y	0.52	14	13	14	13	y	0.52	13	12	13	12	y	0.50	15	15	15	15	y	0.60	9	6	9	6	y	0.47	9	10	9	10	y	0.64	23	13	23	13	y	0.57	12	9	12	9	y	0.66	27	14	27	14	y	ENSMUSG00000029162.16	Khk	chr5	protein_coding	ketohexokinase
novel_NIR_15000	chr5	31082199	31084351	+	31082199	31084032	A3SS&ES	ENSMUST00000031053.15	novel	0.00	0	32	0	32	n	0.04	1	26	1	26	n	0.00	0	32	0	32	n	0.15	6	34	6	34	y	0.10	2	19	2	19	n	0.00	0	14	0	14	n	0.00	0	40	0	40	n	0.00	0	11	0	11	n	0.02	1	41	1	41	n	0.02	1	50	1	50	n	0.14	6	38	6	38	n	0.00	0	42	0	42	n	ENSMUSG00000029162.16	Khk	chr5	protein_coding	ketohexokinase
novel_NIR_15001	chr5	31082199	31084351	+	31082199	31085787	A3SS	ENSMUST00000201571.4	novel	0.00	0	9	0	9	n	0.06	1	16	1	16	n	0.00	0	18	0	18	n	0.35	6	11	6	11	y	0.13	2	13	2	13	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.09	1	10	1	10	n	0.07	1	13	1	13	n	0.40	6	9	6	9	y	0.00	0	14	0	14	n	ENSMUSG00000029162.16	Khk	chr5	protein_coding	ketohexokinase
novel_NIR_15002	chr5	31085223	31085787	+	31082199	31085787	A5SS	ENSMUST00000201571.4	novel	0.10	1	9	1	9	n	0.30	7	16	7	16	y	0.00	0	18	0	18	n	0.21	3	11	3	11	y	0.07	1	13	1	13	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.33	5	10	5	10	y	0.24	4	13	4	13	y	0.10	1	9	1	9	n	0.12	2	14	2	14	n	ENSMUSG00000029162.16	Khk	chr5	protein_coding	ketohexokinase
novel_NIR_15003	chr5	31085223	31085787	+	31084166	31085787	A5SS	ENSMUST00000202752.2	novel	0.25	1	3	1	3	n	0.54	7	6	7	6	y	0.00	0	10	0	10	n	0.27	3	8	3	8	y	0.12	1	7	1	7	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.42	5	7	5	7	y	0.40	4	6	4	6	y	0.09	1	10	1	10	n	0.20	2	8	2	8	y	ENSMUSG00000029162.16	Khk	chr5	protein_coding	ketohexokinase
novel_NIR_15004	chr5	31107516	31110229	+	31107592	31110229	A5SS	ENSMUST00000201125.4	novel	0.43	3	4	3	4	y	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.20	1	4	1	4	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.33	1	2	1	2	n	0.09	1	10	1	10	n	0.20	1	4	1	4	n	0.00	0	4	0	4	n	ENSMUSG00000006638.16	Abhd1	chr5	polymorphic_pseudogene	abhydrolase domain containing 1
novel_NIR_15005	chr5	31111056	31111389	+	31111056	31111223	A3SS&ES	ENSMUST00000201125.4	novel	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.18	2	9	2	9	y	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.12	1	7	1	7	n	0.06	1	17	1	17	n	0.20	2	8	2	8	y	0.00	0	3	0	3	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	ENSMUSG00000006638.16	Abhd1	chr5	polymorphic_pseudogene	abhydrolase domain containing 1
novel_NIR_15006	chr5	31113081	31113276	-	31113081	31113606	A5SS	ENSMUST00000202567.2	novel	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.24	4	13	4	13	y	0.00	0	11	0	11	n	0.20	3	12	3	12	y	0.00	0	2	0	2	n	0.08	1	11	1	11	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	ENSMUSG00000045302.14	Preb	chr5	protein_coding	prolactin regulatory element binding
novel_NIR_15007	chr5	31113081	31113276	-	31113081	31115232	A5SS	ENSMUST00000201002.4	novel	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.57	4	3	4	3	n	0.00	0	1	0	1	n	0.27	3	8	3	8	y	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000045302.14	Preb	chr5	protein_coding	prolactin regulatory element binding
novel_NIR_15008	chr5	31113081	31113276	-	31113081	31116060	A5SS	ENSMUST00000201821.4	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045302.14	Preb	chr5	protein_coding	prolactin regulatory element binding
novel_NIR_15009	chr5	31113081	31113475	-	31113081	31113606	A5SS	ENSMUST00000202567.2	novel	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.15	2	11	2	11	y	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.15	2	11	2	11	y	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	ENSMUSG00000045302.14	Preb	chr5	protein_coding	prolactin regulatory element binding
novel_NIR_15010	chr5	31113081	31113475	-	31113081	31115232	A5SS	ENSMUST00000201002.4	novel	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.67	2	1	2	1	y	0.00	0	8	0	8	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000045302.14	Preb	chr5	protein_coding	prolactin regulatory element binding
novel_NIR_15011	chr5	31113081	31113475	-	31113081	31116060	A5SS	ENSMUST00000201821.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045302.14	Preb	chr5	protein_coding	prolactin regulatory element binding
novel_NIR_15012	chr5	31113605	31115232	-	31113081	31115232	A3SS	ENSMUST00000201002.4	novel	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	1.00	5	0	5	0	y	0.50	1	1	1	1	n	0.00	0	2	0	2	n	ENSMUSG00000045302.14	Preb	chr5	protein_coding	prolactin regulatory element binding
novel_NIR_15013	chr5	31113605	31115232	-	31113433	31115232	A3SS	ENSMUST00000202590.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.20	1	4	1	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	1.00	1	0	1	0	n	0.71	5	2	5	2	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	ENSMUSG00000045302.14	Preb	chr5	protein_coding	prolactin regulatory element binding
novel_NIR_15014	chr5	31116280	31116604	-	31116280	31116510	A5SS	ENSMUST00000200836.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	0.50	3	3	3	3	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000045302.14	Preb	chr5	protein_coding	prolactin regulatory element binding
novel_NIR_15015	chr5	31311086	31311339	-	31311086	31311435	A5SS	ENSMUST00000200864.4	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	ENSMUSG00000107283.4	Mpv17	chr5	protein_coding	MpV17 mitochondrial inner membrane protein
novel_NIR_15016	chr5	31311086	31311339	-	31311086	31311452	A5SS	ENSMUST00000201353.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	4	0	4	0	y	1.00	1	0	1	0	n	ENSMUSG00000107283.4	Mpv17	chr5	protein_coding	MpV17 mitochondrial inner membrane protein
novel_NIR_15017	chr5	31331839	31336591	-	31331839	31333839	A5SS&ES	ENSMUST00000202639.4	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000106864.4	Gtf3c2	chr5	protein_coding	general transcription factor IIIC, polypeptide 2, beta
novel_NIR_15018	chr5	31331839	31336591	-	31331839	31336989	A5SS	ENSMUST00000201428.2	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.50	1	1	1	1	n	0.33	1	2	1	2	n	ENSMUSG00000106864.4	Gtf3c2	chr5	protein_coding	general transcription factor IIIC, polypeptide 2, beta
novel_NIR_15019	chr5	31347090	31347236	-	31347090	31347220	A5SS	ENSMUST00000200977.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029145.13	Eif2b4	chr5	protein_coding	eukaryotic translation initiation factor 2B, subunit 4 delta
novel_NIR_15020	chr5	31347090	31347236	-	31347090	31347321	A5SS	ENSMUST00000200741.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029145.13	Eif2b4	chr5	protein_coding	eukaryotic translation initiation factor 2B, subunit 4 delta
novel_NIR_15021	chr5	31350982	31351213	+	31350722	31351213	A5SS	ENSMUST00000201535.4	novel	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.33	1	2	1	2	n	1.00	1	0	1	0	n	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	ENSMUSG00000029146.15	Snx17	chr5	protein_coding	sorting nexin 17
novel_NIR_15022	chr5	31350982	31351213	+	31350809	31351213	A5SS	ENSMUST00000031029.15	novel	0.03	1	34	1	34	n	0.12	3	21	3	21	n	0.03	1	29	1	29	n	0.09	1	10	1	10	n	0.18	6	28	6	28	y	0.00	0	11	0	11	n	0.05	2	37	2	37	n	0.00	0	16	0	16	n	0.00	0	12	0	12	n	0.09	3	32	3	32	n	0.09	2	20	2	20	n	0.10	3	26	3	26	n	ENSMUSG00000029146.15	Snx17	chr5	protein_coding	sorting nexin 17
novel_NIR_15023	chr5	31357449	31357579	-	31357150	31357579	A3SS	ENSMUST00000201119.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000043059.17	Zfp513	chr5	protein_coding	zinc finger protein 513
novel_NIR_15024	chr5	31401176	31401258	+	31401176	31401262	A3SS	ENSMUST00000202842.4	novel	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.38	3	5	3	5	y	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.00	0	8	0	8	n	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.38	3	5	3	5	y	0.14	1	6	1	6	n	ENSMUSG00000029148.16	Nrbp1	chr5	protein_coding	nuclear receptor binding protein 1
novel_NIR_15025	chr5	31440500;31441201	31440984;31441348	-	31440500	31441348	cassetteExon	ENSMUST00000041565.11	novel	0.05	0.5	10	1;0	10	n	0.11	0.5	4	1;0	4	n	0.00	0.0	9	0;0	9	n	0.00	0.0	8	0;0	8	n	0.00	0.0	13	0;0	13	n	0.00	0.0	6	0;0	6	n	0.00	0.0	11	0;0	11	n	0.33	2.0	4	2;2	4	y	0.00	0.0	16	0;0	16	n	0.00	0.0	12	0;0	12	n	0.00	0.0	10	0;0	10	n	0.00	0.0	11	0;0	11	n	ENSMUSG00000038564.12	Ift172	chr5	protein_coding	intraflagellar transport 172
novel_NIR_15026	chr5	31453006	31453444	-	31453006	31453402	5pMXE	ENSMUST00000201417.2	novel	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000038552.15	Fndc4	chr5	protein_coding	fibronectin type III domain containing 4
novel_NIR_15027	chr5	31453006	31453563	-	31453006	31453402	5pMXE	ENSMUST00000201417.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	6	0	6	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000038552.15	Fndc4	chr5	protein_coding	fibronectin type III domain containing 4
novel_NIR_15028	chr5	31482814	31483701	+	31481957	31483701	A5SS	ENSMUST00000072228.9	novel	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000059434.10	Gckr	chr5	protein_coding	glucokinase regulatory protein
novel_NIR_15029	chr5	31483431	31483701	+	31481957	31483701	A5SS	ENSMUST00000072228.9	novel	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.29	2	5	2	5	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.50	1	1	1	1	n	ENSMUSG00000059434.10	Gckr	chr5	protein_coding	glucokinase regulatory protein
novel_NIR_15030	chr5	31630305	31630832	+	31630305	31630797	A3SS	ENSMUST00000076264.8	novel	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	18	0	18	n	0.22	5	18	5	18	y	0.00	0	16	0	16	n	0.11	1	8	1	8	n	0.00	0	11	0	11	n	0.06	1	17	1	17	n	0.00	0	14	0	14	n	0.00	0	28	0	28	n	0.11	2	16	2	16	n	0.05	1	20	1	20	n	ENSMUSG00000062761.8	Zfp512	chr5	protein_coding	zinc finger protein 512
novel_NIR_15031	chr5	31680605	31683792	-	31680605	31683959	A5SS	ENSMUST00000065388.11	novel	0.14	1	6	1	6	n	0.00	0	7	0	7	n	0.12	2	15	2	15	n	0.00	0	13	0	13	n	0.00	0	26	0	26	n	0.00	0	8	0	8	n	0.15	2	11	2	11	y	0.08	1	11	1	11	n	0.06	1	16	1	16	n	0.09	1	10	1	10	n	0.00	0	6	0	6	n	0.18	2	9	2	9	y	ENSMUSG00000053134.14	Supt7l	chr5	protein_coding	SPT7-like, STAGA complex gamma subunit
novel_NIR_15032	chr5	31680605	31683792	-	31680605	31684966	A5SS	ENSMUST00000202932.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000053134.14	Supt7l	chr5	protein_coding	SPT7-like, STAGA complex gamma subunit
novel_NIR_15033	chr5	31771500	31771947	+	31771611	31771947	A5SS	ENSMUST00000201483.4	novel	0.67	4	2	4	2	y	0.60	3	2	3	2	y	0.00	0	1	0	1	n	1.00	3	0	3	0	y	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	5	0	5	0	y	0.40	2	3	2	3	y	0.86	6	1	6	1	y	0.75	3	1	3	1	y	-	-	-	-	-	-	ENSMUSG00000106918.4	Mrpl33	chr5	protein_coding	mitochondrial ribosomal protein L33
novel_NIR_15034	chr5	31771568	31771947	+	31771611	31771947	A5SS	ENSMUST00000201483.4	novel	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.40	2	3	2	3	y	0.67	2	1	2	1	y	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.80	4	1	4	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000106918.4	Mrpl33	chr5	protein_coding	mitochondrial ribosomal protein L33
novel_NIR_15035	chr5	31773242	31773725	+	31754365	31773725	A5SS	ENSMUST00000200694.4	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	8	0	8	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.88	7	1	7	1	y	1.00	7	0	7	0	y	1.00	7	0	7	0	y	ENSMUSG00000105617.5	Gm43809	chr5	lncRNA	predicted gene 43809
novel_NIR_15036	chr5	31773242	31773725	+	31771366	31773725	A5SS	ENSMUST00000202243.4	novel	1.00	1	0	1	0	n	0.00	0	9	0	9	n	0.56	5	4	5	4	y	0.23	3	10	3	10	y	0.62	5	3	5	3	y	0.50	2	2	2	2	y	0.53	8	7	8	7	y	0.67	2	1	2	1	y	0.11	1	8	1	8	n	0.64	7	4	7	4	n	0.70	7	3	7	3	y	0.50	7	7	7	7	y	ENSMUSG00000106918.4	Mrpl33	chr5	protein_coding	mitochondrial ribosomal protein L33
novel_NIR_15037	chr5	31773831	31775033	+	31773831	31786960	A3SS	ENSMUST00000202243.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000106918.4	Mrpl33	chr5	protein_coding	mitochondrial ribosomal protein L33
novel_NIR_15038	chr5	31773831	31775033	+	31773831	31807647	A3SS	ENSMUST00000201910.4	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000106918.4	Mrpl33	chr5	protein_coding	mitochondrial ribosomal protein L33
novel_NIR_15039	chr5	31773831	31775033	+	31773831	31859170	A3SS	ENSMUST00000200694.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000105617.5	Gm43809	chr5	lncRNA	predicted gene 43809
novel_NIR_15040	chr5	31782000	31802580	-	31782000	31797561	5pMXE	ENSMUST00000201744.2	novel	0.33	1	2	1	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	ENSMUSG00000029136.10	Rbks	chr5	protein_coding	ribokinase
novel_NIR_15041	chr5	32648398	32649674	+	32648533	32649674	A5SS	ENSMUST00000201880.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.44	4	5	4	5	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000014956.16	Ppp1cb	chr5	protein_coding	protein phosphatase 1 catalytic subunit beta
novel_NIR_15042	chr5	32769640	32797675	+	32768719	32797675	A5SS	ENSMUST00000202543.4	novel	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.30	3	7	3	7	y	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	ENSMUSG00000014932.16	Yes1	chr5	protein_coding	YES proto-oncogene 1, Src family tyrosine kinase
novel_NIR_15043	chr5	32769640	32797675	+	32769181	32797675	A5SS	ENSMUST00000072311.13	novel	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.33	3	6	3	6	y	0.00	0	1	0	1	n	0.00	0	15	0	15	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	ENSMUSG00000014932.16	Yes1	chr5	protein_coding	YES proto-oncogene 1, Src family tyrosine kinase
novel_NIR_15044	chr5	32896264	32896502	-	32896264	32896528	A5SS	ENSMUST00000202283.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023452.20	Pisd	chr5	protein_coding	phosphatidylserine decarboxylase
novel_NIR_15045	chr5	32899819	32922117	-	32899819	32903527	5pMXE	ENSMUST00000135248.2	novel	0.00	0	4	0	4	n	0.43	3	4	3	4	y	0.00	0	3	0	3	n	0.67	2	1	2	1	y	0.00	0	10	0	10	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.50	3	3	3	3	y	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000023452.20	Pisd	chr5	protein_coding	phosphatidylserine decarboxylase
novel_NIR_15046	chr5	32966017	32977210	-	32953005	32977210	A3SS	ENSMUST00000144673.3	novel	0.10	1	9	1	9	n	0.38	3	5	3	5	y	0.00	0	13	0	13	n	0.00	0	13	0	13	n	0.00	0	23	0	23	n	0.00	0	4	0	4	n	0.05	1	20	1	20	n	0.17	2	10	2	10	y	0.00	0	9	0	9	n	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	ENSMUSG00000093574.2	Gm20671	chr5	protein_coding	predicted gene 20671
novel_NIR_15047	chr5	32993032	33001772	-	32993032	33001388	A5SS	ENSMUST00000120129.9	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.25	2	6	2	6	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.14	1	6	1	6	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000054280.15	Prr14l	chr5	protein_coding	proline rich 14-like
novel_NIR_15048	chr5	32993032	33009226	-	32993032	33011437	A5SS	ENSMUST00000130134.3	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000054280.15	Prr14l	chr5	protein_coding	proline rich 14-like
novel_NIR_15049	chr5	32993032	33009226	-	32993032;33001908	33001388;33009226	ES	ENSMUST00000120129.9	novel	0.00	0	1.0	0	1;1	n	0.00	0	0.5	0	0;1	n	0.00	0	2.0	0	2;2	n	0.00	0	0.5	0	1;0	n	0.00	0	4.5	0	6;3	n	0.00	0	3.0	0	4;2	n	0.44	2	2.5	2	4;1	y	0.00	0	3.5	0	3;4	n	0.00	0	0.5	0	1;0	n	0.22	1	3.5	1	6;1	n	-	-	-	-	-	-	0.00	0	1.0	0	2;0	n	ENSMUSG00000054280.15	Prr14l	chr5	protein_coding	proline rich 14-like
novel_NIR_15050	chr5	32993032;33001908	33001772;33011437	-	32993032	33011437	cassetteExon	ENSMUST00000130134.3	novel	1.00	1.0	0	0;2	0	n	0.00	0.0	2	0;0	2	n	-	-	-	-	-	-	0.20	0.5	2	0;1	2	n	0.60	4.5	3	2;7	3	y	-	-	-	-	-	-	0.00	0.0	1	0;0	1	n	-	-	-	-	-	-	0.00	0.0	1	0;0	1	n	0.33	0.5	1	1;0	1	n	0.00	0.0	1	0;0	1	n	0.00	0.0	2	0;0	2	n	ENSMUSG00000054280.15	Prr14l	chr5	protein_coding	proline rich 14-like
novel_NIR_15051	chr5	33001908	33011437	-	32993032	33011437	A3SS	ENSMUST00000130134.3	novel	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.70	7	3	7	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000054280.15	Prr14l	chr5	protein_coding	proline rich 14-like
novel_NIR_15052	chr5	33001908	33011437	-	33001908;33009342	33009226;33011437	ES	ENSMUST00000120129.9	novel	0.67	2	1.0	2	1;1	y	0.00	0	0.5	0	1;0	n	0.00	0	2.5	0	2;3	n	1.00	1	0.0	1	0;0	n	0.70	7	3.0	7	3;3	y	0.00	0	1.5	0	2;1	n	0.00	0	0.5	0	1;0	n	0.00	0	2.0	0	4;0	n	0.00	0	0.5	0	0;1	n	0.00	0	1.0	0	1;1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000054280.15	Prr14l	chr5	protein_coding	proline rich 14-like
novel_NIR_15053	chr5	33058899	33059174	+	33058903	33059174	A5SS	ENSMUST00000049780.13	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.40	2	3	2	3	y	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	19	0	19	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	ENSMUSG00000037426.19	Depdc5	chr5	protein_coding	DEP domain containing 5
novel_NIR_15054	chr5	33104111	33121976	+	33104111;33113302	33113197;33121976	ES	ENSMUST00000120902.8	novel	0.00	0	8.0	0	10;6	n	0.00	0	5.0	0	5;5	n	0.00	0	5.5	0	5;6	n	0.00	0	15.0	0	16;14	n	0.00	0	13.0	0	17;9	n	0.00	0	10.5	0	5;16	n	0.00	0	16.0	0	14;18	n	0.00	0	10.5	0	11;10	n	0.00	0	17.0	0	14;20	n	0.00	0	13.0	0	11;15	n	0.15	2	11.5	2	10;13	y	0.00	0	15.0	0	13;17	n	ENSMUSG00000037426.19	Depdc5	chr5	protein_coding	DEP domain containing 5
novel_NIR_15055	chr5	33536669	33545154	+	33536669	33545000	A3SS	ENSMUST00000200682.2	novel	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.22	2	7	2	7	y	0.00	0	12	0	12	n	0.09	1	10	1	10	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.25	2	6	2	6	y	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.15	2	11	2	11	y	ENSMUSG00000037355.15	Uvssa	chr5	protein_coding	UV stimulated scaffold protein A
novel_NIR_15056	chr5	33546180	33547180	+	33546180	33546986	A3SS	ENSMUST00000200682.2	novel	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.09	1	10	1	10	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.23	3	10	3	10	y	0.14	2	12	2	12	n	ENSMUSG00000037355.15	Uvssa	chr5	protein_coding	UV stimulated scaffold protein A
novel_NIR_15057	chr5	33553300	33559838	+	33549528	33559838	A5SS	ENSMUST00000200682.2	novel	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.15	2	11	2	11	y	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	15	0	15	n	ENSMUSG00000037355.15	Uvssa	chr5	protein_coding	UV stimulated scaffold protein A
novel_NIR_15058	chr5	33758224	33767776	-	33765776	33767776	3pMXE	ENSMUST00000153696.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000037339.18	Fam53a	chr5	protein_coding	family with sequence similarity 53, member A
novel_NIR_15059	chr5	33772178	33786622	-	33772178	33786193	5pMXE	ENSMUST00000155980.2	novel	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.67	2	1	2	1	y	ENSMUSG00000037339.18	Fam53a	chr5	protein_coding	family with sequence similarity 53, member A
novel_NIR_15060	chr5	33772178	33786622	-	33772178	33786681	A5SS	ENSMUST00000137705.8	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	2	0	2	0	y	ENSMUSG00000037339.18	Fam53a	chr5	protein_coding	family with sequence similarity 53, member A
novel_NIR_15061	chr5	33888775	33889461	+	33887678	33889461	A5SS	ENSMUST00000067150.14	novel	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	7	0	7	0	y	-	-	-	-	-	-	0.71	5	2	5	2	y	ENSMUSG00000054252.19	Fgfr3	chr5	protein_coding	fibroblast growth factor receptor 3
novel_NIR_15062	chr5	33888775	33889461	+	33888775	33890066	A3SS	ENSMUST00000114411.9	novel	0.22	2	7	2	7	y	0.00	0	15	0	15	n	0.20	1	4	1	4	n	0.00	0	11	0	11	n	0.00	0	29	0	29	n	0.14	1	6	1	6	n	0.00	0	12	0	12	n	0.08	1	11	1	11	n	0.00	0	11	0	11	n	0.29	7	17	7	17	y	0.00	0	15	0	15	n	0.22	5	18	5	18	y	ENSMUSG00000054252.19	Fgfr3	chr5	protein_coding	fibroblast growth factor receptor 3
novel_NIR_15063	chr5	33890262	33890601	+	33890256	33890601	A5SS	ENSMUST00000067150.14	novel	0.00	0	21	0	21	n	0.00	0	23	0	23	n	0.00	0	6	0	6	n	0.17	3	15	3	15	y	0.00	0	37	0	37	n	0.00	0	6	0	6	n	0.07	1	14	1	14	n	0.00	0	21	0	21	n	0.00	0	20	0	20	n	0.00	0	26	0	26	n	0.00	0	26	0	26	n	0.03	1	30	1	30	n	ENSMUSG00000054252.19	Fgfr3	chr5	protein_coding	fibroblast growth factor receptor 3
novel_NIR_15064	chr5	3392718	3394119	+	3391574	3394119	A5SS	ENSMUST00000199156.2	novel	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000040274.12	Cdk6	chr5	protein_coding	cyclin-dependent kinase 6
novel_NIR_15065	chr5	3392718	3394119	+	3393788	3394119	5pMXE	ENSMUST00000197607.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040274.12	Cdk6	chr5	protein_coding	cyclin-dependent kinase 6
novel_NIR_15066	chr5	3392718	3394119	+	3393971	3394119	5pMXE	ENSMUST00000165117.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040274.12	Cdk6	chr5	protein_coding	cyclin-dependent kinase 6
novel_NIR_15067	chr5	34026222	34026571	+	34026222	34028751	A3SS	ENSMUST00000114399.8	novel	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.29	2	5	2	5	y	ENSMUSG00000057406.17	Nsd2	chr5	protein_coding	nuclear receptor binding SET domain protein 2
novel_NIR_15068	chr5	34026222	34026571	+	34026222	34036402	A3SS	ENSMUST00000075812.11	novel	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.22	2	7	2	7	y	ENSMUSG00000057406.17	Nsd2	chr5	protein_coding	nuclear receptor binding SET domain protein 2
novel_NIR_15069	chr5	34036520	34037396	+	34036533	34037396	A5SS	ENSMUST00000075812.11	novel	0.40	2	3	2	3	y	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	ENSMUSG00000057406.17	Nsd2	chr5	protein_coding	nuclear receptor binding SET domain protein 2
novel_NIR_15070	chr5	34079361	34085643	-	34079361	34093370	A5SS	ENSMUST00000030993.8	novel	0.00	0	20	0	20	n	0.06	1	16	1	16	n	0.05	1	18	1	18	n	0.00	0	22	0	22	n	0.00	0	37	0	37	n	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.17	2	10	2	10	y	0.00	0	20	0	20	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	ENSMUSG00000029111.8	Nelfa	chr5	protein_coding	negative elongation factor complex member A, Whsc2
novel_NIR_15071	chr5	34336268	34337683	-	34336268	34344673	A5SS	ENSMUST00000119171.2	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.88	7	1	7	1	y	-	-	-	-	-	-	1.00	8	0	8	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000037235.14	Mxd4	chr5	protein_coding	Max dimerization protein 4
novel_NIR_15072	chr5	34336268	34338842	-	34336268	34344673	A5SS	ENSMUST00000119171.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.86	6	1	6	1	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000037235.14	Mxd4	chr5	protein_coding	Max dimerization protein 4
novel_NIR_15073	chr5	34568167	34577342	+	34568167	34577345	A3SS	ENSMUST00000180376.8	novel	0.29	2	5	2	5	y	0.00	0	2	0	2	n	0.50	7	7	7	7	y	0.38	3	5	3	5	y	0.78	7	2	7	2	y	0.25	1	3	1	3	n	0.17	1	5	1	5	n	0.33	2	4	2	4	y	0.50	3	3	3	3	y	0.80	8	2	8	2	y	1.00	3	0	3	0	y	0.43	6	8	6	8	y	ENSMUSG00000037210.17	Fam193a	chr5	protein_coding	family with sequence homology 193, member A
novel_NIR_15074	chr5	34616632	34619428	+	34616632;34618721	34618439;34619428	ES	ENSMUST00000180376.8	novel	0.00	0	12.5	0	12;13	n	0.00	0	9.0	0	8;10	n	0.07	1	14.0	1	7;21	n	0.00	0	15.5	0	16;15	n	0.00	0	18.0	0	17;19	n	0.00	0	11.0	0	8;14	n	0.16	2	10.5	2	8;13	y	0.00	0	12.0	0	10;14	n	0.00	0	9.5	0	7;12	n	0.06	1	16.5	1	9;24	n	0.00	0	18.0	0	19;17	n	0.07	1	14.0	1	10;18	n	ENSMUSG00000037210.17	Fam193a	chr5	protein_coding	family with sequence homology 193, member A
novel_NIR_15075	chr5	34656643	34656836	-	34656643	34658252	A5SS	ENSMUST00000114359.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000059866.14	Tnip2	chr5	protein_coding	TNFAIP3 interacting protein 2
novel_NIR_15076	chr5	34683245	34694196	+	34683245	34683888	A3SS&ES	ENSMUST00000125817.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000054520.16	Sh3bp2	chr5	protein_coding	SH3-domain binding protein 2
novel_NIR_15077	chr5	34687879	34708905	+	34684099	34708905	A5SS	ENSMUST00000125817.8	novel	0.80	4	1	4	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	4	2	4	2	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	ENSMUSG00000054520.16	Sh3bp2	chr5	protein_coding	SH3-domain binding protein 2
novel_NIR_15078	chr5	34687879	34708905	+	34700926	34708905	5pMXE	ENSMUST00000153750.3	novel	1.00	4	0	4	0	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.50	2	2	2	2	y	1.00	3	0	3	0	y	ENSMUSG00000054520.16	Sh3bp2	chr5	protein_coding	SH3-domain binding protein 2
novel_NIR_15079	chr5	34687879	34708905	+	34707140	34708905	5pMXE	ENSMUST00000118545.8	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.75	3	1	3	1	y	ENSMUSG00000054520.16	Sh3bp2	chr5	protein_coding	SH3-domain binding protein 2
novel_NIR_15080	chr5	34774158	34774780	+	34774158	34782623	A3SS	ENSMUST00000135321.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000029106.15	Add1	chr5	protein_coding	adducin 1 (alpha)
novel_NIR_15081	chr5	34792871	34792953	-	34792736	34792953	A3SS	ENSMUST00000201147.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	ENSMUSG00000001082.13	Mfsd10	chr5	protein_coding	major facilitator superfamily domain containing 10
novel_NIR_15082	chr5	34792871	34792953	-	34792875	34792953	A3SS	ENSMUST00000001109.11	novel	0.00	0	15	0	15	n	0.10	1	9	1	9	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	20	0	20	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.10	1	9	1	9	n	0.00	0	12	0	12	n	0.21	3	11	3	11	y	0.17	2	10	2	10	y	ENSMUSG00000001082.13	Mfsd10	chr5	protein_coding	major facilitator superfamily domain containing 10
novel_NIR_15083	chr5	34798799	34801270	-	34798801	34801270	A3SS	ENSMUST00000201897.2	novel	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	4	0	4	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000036693.13	Nop14	chr5	protein_coding	NOP14 nucleolar protein
novel_NIR_15084	chr5	34852197	34873533	+	34852197	34856207	3pMXE	ENSMUST00000074651.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000052783.17	Grk4	chr5	protein_coding	G protein-coupled receptor kinase 4
novel_NIR_15085	chr5	34991732	35000078	+	34991732	35000135	A3SS	ENSMUST00000080036.3	novel	0.00	0	5	0	5	n	0.33	2	4	2	4	y	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.14	2	12	2	12	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.20	2	8	2	8	y	ENSMUSG00000029104.16	Htt	chr5	protein_coding	huntingtin
novel_NIR_15086	chr5	3514927	3523119	+	3479158	3523119	A5SS	ENSMUST00000165117.8	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.22	2	7	2	7	y	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	ENSMUSG00000040274.12	Cdk6	chr5	protein_coding	cyclin-dependent kinase 6
novel_NIR_15087	chr5	35178603	35181621	+	35178603	35179936	3pMXE	ENSMUST00000141562.2	novel	0.33	2	4	2	4	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000029101.17	Rgs12	chr5	protein_coding	regulator of G-protein signaling 12
novel_NIR_15088	chr5	35178603	35181621	+	35180526	35181621	5pMXE	ENSMUST00000135403.2	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000029101.17	Rgs12	chr5	protein_coding	regulator of G-protein signaling 12
novel_NIR_15089	chr5	35187564	35189215	+	35187434	35189215	A5SS	ENSMUST00000114280.8	novel	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	18	0	18	n	0.00	0	3	0	3	n	0.33	2	4	2	4	y	ENSMUSG00000029101.17	Rgs12	chr5	protein_coding	regulator of G-protein signaling 12
novel_NIR_15090	chr5	35187564	35189215	+	35187965	35189215	A5SS&ES	ENSMUST00000030984.14	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.25	2	6	2	6	y	ENSMUSG00000029101.17	Rgs12	chr5	protein_coding	regulator of G-protein signaling 12
novel_NIR_15091	chr5	35199054	35199644	+	35199054	35199910	A3SS	ENSMUST00000202573.2	novel	0.00	0	4	0	4	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.25	3	9	3	9	y	0.67	2	1	2	1	n	0.00	0	9	0	9	n	ENSMUSG00000029102.10	Hgfac	chr5	protein_coding	hepatocyte growth factor activator
novel_NIR_15092	chr5	35199054	35199668	+	35199054	35199910	A3SS	ENSMUST00000202573.2	novel	0.50	4	4	4	4	y	0.00	0	6	0	6	n	-	-	-	-	-	-	0.75	6	2	6	2	n	0.65	13	7	13	7	y	0.00	0	1	0	1	n	0.67	4	2	4	2	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.50	9	9	9	9	y	0.00	0	1	0	1	n	0.53	10	9	10	9	y	ENSMUSG00000029102.10	Hgfac	chr5	protein_coding	hepatocyte growth factor activator
novel_NIR_15093	chr5	35199054	35199714	+	35199054	35199910	A3SS	ENSMUST00000202573.2	novel	0.00	0	4	0	4	n	0.14	1	6	1	6	n	-	-	-	-	-	-	0.67	4	2	4	2	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.67	4	2	4	2	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.25	3	9	3	9	y	ENSMUSG00000029102.10	Hgfac	chr5	protein_coding	hepatocyte growth factor activator
novel_NIR_15094	chr5	35199054	35199786	+	35199054	35199910	A3SS	ENSMUST00000202573.2	novel	0.00	0	4	0	4	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.29	2	5	2	5	y	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	ENSMUSG00000029102.10	Hgfac	chr5	protein_coding	hepatocyte growth factor activator
novel_NIR_15095	chr5	35199054;35199812	35199644;35199910	+	35199054	35199910	cassetteExon	ENSMUST00000202573.2	novel	0.00	0.0	4	0;0	4	n	0.14	1.0	6	0;2	6	n	-	-	-	-	-	-	0.50	2.0	2	0;4	2	n	0.00	0.0	7	0;0	7	n	0.00	0.0	1	0;0	1	n	0.50	2.0	2	0;4	2	n	0.00	0.0	1	0;0	1	n	0.00	0.0	5	0;0	5	n	0.14	1.5	9	3;0	9	n	0.67	2.0	1	2;2	1	y	0.00	0.0	9	0;0	9	n	ENSMUSG00000029102.10	Hgfac	chr5	protein_coding	hepatocyte growth factor activator
novel_NIR_15096	chr5	35199054;35199812	35199668;35199910	+	35199054	35199910	cassetteExon	ENSMUST00000202573.2	novel	0.33	2.0	4	4;0	4	n	0.14	1.0	6	0;2	6	n	-	-	-	-	-	-	0.71	5.0	2	6;4	2	y	0.48	6.5	7	13;0	7	n	0.00	0.0	1	0;0	1	n	0.67	4.0	2	4;4	2	y	0.00	0.0	1	0;0	1	n	0.00	0.0	5	0;0	5	n	0.33	4.5	9	9;0	9	n	0.50	1.0	1	0;2	1	n	0.36	5.0	9	10;0	9	n	ENSMUSG00000029102.10	Hgfac	chr5	protein_coding	hepatocyte growth factor activator
novel_NIR_15097	chr5	35199054;35199812	35199714;35199910	+	35199054	35199910	cassetteExon	ENSMUST00000202573.2	novel	0.00	0.0	4	0;0	4	n	0.20	1.5	6	1;2	6	n	-	-	-	-	-	-	0.67	4.0	2	4;4	2	y	0.00	0.0	7	0;0	7	n	0.00	0.0	1	0;0	1	n	0.67	4.0	2	4;4	2	y	0.00	0.0	1	0;0	1	n	0.00	0.0	5	0;0	5	n	0.00	0.0	9	0;0	9	n	0.50	1.0	1	0;2	1	n	0.14	1.5	9	3;0	9	n	ENSMUSG00000029102.10	Hgfac	chr5	protein_coding	hepatocyte growth factor activator
novel_NIR_15098	chr5	35202190	35202556	+	35202193	35202556	A5SS	ENSMUST00000201038.4	novel	0.00	0	22	0	22	n	0.00	0	28	0	28	n	0.00	0	7	0	7	n	0.00	0	25	0	25	n	0.00	0	41	0	41	n	0.00	0	15	0	15	n	0.17	4	20	4	20	y	0.00	0	11	0	11	n	0.06	1	16	1	16	n	0.00	0	24	0	24	n	0.00	0	29	0	29	n	0.20	5	20	5	20	y	ENSMUSG00000029102.10	Hgfac	chr5	protein_coding	hepatocyte growth factor activator
novel_NIR_15099	chr5	3523228	3569359	+	3523228;3565504	3565454;3569359	ES	ENSMUST00000165117.8	novel	0.00	0	2.5	0	3;2	n	0.00	0	3.0	0	2;4	n	0.00	0	12.0	0	12;12	n	0.00	0	11.0	0	12;10	n	0.00	0	17.5	0	19;16	n	0.00	0	5.5	0	6;5	n	0.00	0	9.5	0	14;5	n	0.21	2	7.5	2	10;5	y	0.00	0	7.5	0	7;8	n	0.00	0	17.5	0	17;18	n	0.00	0	4.5	0	5;4	n	0.00	0	4.5	0	5;4	n	ENSMUSG00000040274.12	Cdk6	chr5	protein_coding	cyclin-dependent kinase 6
novel_NIR_15100	chr5	35260659	35262823	-	35260659	35261615	5pMXE	ENSMUST00000132754.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029103.17	Lrpap1	chr5	protein_coding	low density lipoprotein receptor-related protein associated protein 1
novel_NIR_15101	chr5	35767166	35768829	+	35767166	35768424	A3SS	ENSMUST00000068563.12	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029098.18	Acox3	chr5	protein_coding	acyl-Coenzyme A oxidase 3, pristanoyl
novel_NIR_15102	chr5	35767166	35768829	+	35767166	35768832	A3SS	ENSMUST00000114238.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029098.18	Acox3	chr5	protein_coding	acyl-Coenzyme A oxidase 3, pristanoyl
novel_NIR_15103	chr5	35767166	35768829	+	35767166	35771346	A3SS	ENSMUST00000202266.4	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029098.18	Acox3	chr5	protein_coding	acyl-Coenzyme A oxidase 3, pristanoyl
novel_NIR_15104	chr5	3612352	3614241	+	3609698	3614241	A5SS	ENSMUST00000197082.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000058503.12	Fam133b	chr5	protein_coding	family with sequence similarity 133, member B
novel_NIR_15105	chr5	3612352	3614241	+	3611089	3614241	A5SS	ENSMUST00000115527.8	novel	0.00	0	20	0	20	n	0.00	0	21	0	21	n	0.00	0	32	0	32	n	0.00	0	24	0	24	n	0.00	0	36	0	36	n	0.20	2	8	2	8	y	0.00	0	30	0	30	n	0.00	0	20	0	20	n	0.00	0	17	0	17	n	0.00	0	29	0	29	n	0.00	0	23	0	23	n	0.00	0	15	0	15	n	ENSMUSG00000058503.12	Fam133b	chr5	protein_coding	family with sequence similarity 133, member B
novel_NIR_15106	chr5	3656410	3660179	+	3656410	3662881	A3SS	ENSMUST00000126545.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000005907.15	Pex1	chr5	protein_coding	peroxisomal biogenesis factor 1
novel_NIR_15107	chr5	36613755	36622325	-	36613755	36621859	5pMXE	ENSMUST00000149687.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.60	3	2	3	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000039563.7	2210406O10Rik	chr5	lncRNA	RIKEN cDNA 2210406O10 gene
novel_NIR_15108	chr5	36634306	36639901	-	36634306	36641357	A5SS	ENSMUST00000119916.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029196.10	Tada2b	chr5	protein_coding	transcriptional adaptor 2B
novel_NIR_15109	chr5	36634306	36640322	-	36634306	36641357	A5SS	ENSMUST00000119916.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029196.10	Tada2b	chr5	protein_coding	transcriptional adaptor 2B
novel_NIR_15110	chr5	36652620	36671383	-	36652620	36664922	5pMXE	ENSMUST00000173757.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000029192.18	Tbc1d14	chr5	protein_coding	TBC1 domain family, member 14
novel_NIR_15111	chr5	36652620	36671383	-	36652620	36728640	A5SS	ENSMUST00000173532.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029192.18	Tbc1d14	chr5	protein_coding	TBC1 domain family, member 14
novel_NIR_15112	chr5	36760147	36770590	-	36760147;36765390	36765282;36770590	ES	ENSMUST00000132383.6	novel	0.00	0	11.5	0	2;21	n	0.00	0	15.5	0	6;25	n	0.00	0	24.5	0	7;42	n	0.00	0	25.5	0	7;44	n	0.00	0	33.5	0	10;57	n	0.00	0	8.5	0	2;15	n	0.00	0	24.5	0	3;46	n	0.17	2	9.5	2	6;13	y	0.00	0	16.5	0	5;28	n	0.00	0	40.5	0	16;65	n	0.00	0	19.0	0	11;27	n	0.00	0	33.5	0	15;52	n	ENSMUSG00000029190.20	D5Ertd579e	chr5	protein_coding	DNA segment, Chr 5, ERATO Doi 579, expressed
novel_NIR_15113	chr5	36787135;36829427	36829350;36830092	-	36787135	36830092	cassetteExon	ENSMUST00000031091.13	novel	0.33	9.5	19	0;19	19	n	0.38	5.5	9	2;9	9	y	0.49	20.5	21	0;41	21	n	0.22	9.0	32	0;18	32	n	0.30	12.0	28	1;23	28	n	0.27	3.0	8	0;6	8	n	0.21	8.0	30	0;16	30	n	0.32	6.5	14	0;13	14	n	0.25	5.0	15	0;10	15	n	0.20	11.5	47	0;23	47	n	0.34	10.5	20	0;21	20	n	0.11	5.5	43	0;11	43	n	ENSMUSG00000029190.20	D5Ertd579e	chr5	protein_coding	DNA segment, Chr 5, ERATO Doi 579, expressed
novel_NIR_15114	chr5	3680336	3681589	+	3680292	3681589	A5SS	ENSMUST00000006061.13	novel	0.00	0	45	0	45	n	0.23	10	33	10	33	y	0.12	5	36	5	36	n	0.04	2	53	2	53	n	0.09	5	53	5	53	n	0.09	3	29	3	29	n	0.03	2	66	2	66	n	0.00	0	31	0	31	n	0.00	0	44	0	44	n	0.03	2	77	2	77	n	0.05	3	55	3	55	n	0.05	2	38	2	38	n	ENSMUSG00000005907.15	Pex1	chr5	protein_coding	peroxisomal biogenesis factor 1
novel_NIR_15115	chr5	36829427	36830092	-	36787135	36830092	A3SS	ENSMUST00000031091.13	novel	0.50	19	19	19	19	y	0.50	9	9	9	9	n	0.66	41	21	41	21	y	0.36	18	32	18	32	y	0.45	23	28	23	28	n	0.43	6	8	6	8	y	0.35	16	30	16	30	y	0.48	13	14	13	14	y	0.40	10	15	10	15	y	0.33	23	47	23	47	y	0.51	21	20	21	20	y	0.20	11	43	11	43	y	ENSMUSG00000029190.20	D5Ertd579e	chr5	protein_coding	DNA segment, Chr 5, ERATO Doi 579, expressed
novel_NIR_15116	chr5	36830586	36853870	-	36830586	36853199	5pMXE	ENSMUST00000031091.13	novel	0.15	4	23	4	23	y	0.29	5	12	5	12	y	0.00	0	35	0	35	n	0.00	0	33	0	33	n	0.00	0	48	0	48	n	0.00	0	19	0	19	n	0.00	0	30	0	30	n	0.10	2	18	2	18	n	0.05	1	20	1	20	n	0.06	2	29	2	29	n	0.09	2	21	2	21	n	0.11	3	25	3	25	n	ENSMUSG00000029190.20	D5Ertd579e	chr5	protein_coding	DNA segment, Chr 5, ERATO Doi 579, expressed
novel_NIR_15117	chr5	37125882	37128902	-	37125794	37128902	A3SS	ENSMUST00000166339.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000039474.14	Wfs1	chr5	protein_coding	wolframin ER transmembrane glycoprotein
novel_NIR_15118	chr5	38292646	38300331	+	38292646	38293699	3pMXE	ENSMUST00000031008.13	novel	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	-	-	-	-	-	-	0.33	3	6	3	6	y	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	7	0	7	n	-	-	-	-	-	-	ENSMUSG00000029125.15	Stx18	chr5	protein_coding	syntaxin 18
novel_NIR_15119	chr5	38349481	38360840	-	38349481;38349903	38349846;38360840	ES	ENSMUST00000124939.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	1.00	2	0.0	2	0;0	y	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	ENSMUSG00000029127.16	Zbtb49	chr5	protein_coding	zinc finger and BTB domain containing 49
novel_NIR_15120	chr5	38349481	38360840	-	38358657	38360840	3pMXE	ENSMUST00000094833.10	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.33	2	4	2	4	y	0.20	1	4	1	4	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.67	2	1	2	1	y	0.29	2	5	2	5	y	0.00	0	7	0	7	n	0.20	1	4	1	4	n	0.00	0	7	0	7	n	ENSMUSG00000029127.16	Zbtb49	chr5	protein_coding	zinc finger and BTB domain containing 49
novel_NIR_15121	chr5	3853483	3856441	+	3853483	3856419	A3SS	ENSMUST00000199845.5	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.22	2	7	2	7	y	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.25	1	3	1	3	n	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	ENSMUSG00000000600.16	Krit1	chr5	protein_coding	KRIT1, ankyrin repeat containing
novel_NIR_15122	chr5	3853483	3856441	+	3853483	3856465	A3SS	ENSMUST00000080085.9	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.29	2	5	2	5	y	0.00	0	6	0	6	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.11	1	8	1	8	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000000600.16	Krit1	chr5	protein_coding	KRIT1, ankyrin repeat containing
novel_NIR_15123	chr5	38633990	38634343	-	38633990	38634738	A5SS	ENSMUST00000140462.2	novel	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.29	4	10	4	10	y	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	ENSMUSG00000005107.14	Slc2a9	chr5	protein_coding	solute carrier family 2 (facilitated glucose transporter), member 9
novel_NIR_15124	chr5	38634003	38634738	-	38610605	38634738	A3SS	ENSMUST00000067886.12	novel	0.05	2	41	2	41	n	0.07	2	27	2	27	n	0.33	9	18	9	18	y	0.00	0	51	0	51	n	0.26	15	43	15	43	y	0.00	0	16	0	16	n	0.17	9	43	9	43	y	0.19	7	29	7	29	y	0.17	6	30	6	30	y	0.24	20	64	20	64	y	0.07	3	38	3	38	n	0.04	2	53	2	53	n	ENSMUSG00000005107.14	Slc2a9	chr5	protein_coding	solute carrier family 2 (facilitated glucose transporter), member 9
novel_NIR_15125	chr5	38634003	38634738	-	38633990	38634738	A3SS	ENSMUST00000140462.2	novel	0.20	2	8	2	8	y	0.25	2	6	2	6	y	0.56	9	7	9	7	y	0.00	0	10	0	10	n	0.60	15	10	15	10	y	0.00	0	6	0	6	n	0.38	9	15	9	15	y	0.78	7	2	7	2	y	0.33	6	12	6	12	y	0.62	20	12	20	12	y	0.21	3	11	3	11	y	0.18	2	9	2	9	y	ENSMUSG00000005107.14	Slc2a9	chr5	protein_coding	solute carrier family 2 (facilitated glucose transporter), member 9
novel_NIR_15126	chr5	38640728	38645446	-	38640728	38658983	A5SS	ENSMUST00000147664.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000005107.14	Slc2a9	chr5	protein_coding	solute carrier family 2 (facilitated glucose transporter), member 9
novel_NIR_15127	chr5	38640728	38645446	-	38640728	38659302	A5SS	ENSMUST00000005238.13	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000005107.14	Slc2a9	chr5	protein_coding	solute carrier family 2 (facilitated glucose transporter), member 9
novel_NIR_15128	chr5	3941897	3942841	-	3941897	3942809	A5SS	ENSMUST00000117463.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000040429.7	Mterf1a	chr5	protein_coding	mitochondrial transcription termination factor 1a
novel_NIR_15129	chr5	3941897	3942841	-	3941897	3943875	A5SS	ENSMUST00000044746.5	novel	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	ENSMUSG00000040429.7	Mterf1a	chr5	protein_coding	mitochondrial transcription termination factor 1a
novel_NIR_15130	chr5	4053782	4055410	+	4053782;4054943	4054803;4055410	ES	ENSMUST00000044492.10	novel	1.00	11	0.0	11	0;0	y	1.00	3	0.0	3	0;0	y	1.00	13	0.0	13	0;0	y	1.00	20	0.0	20	0;0	y	0.92	18	1.5	18	0;3	y	1.00	7	0.0	7	0;0	y	0.84	8	1.5	8	3;0	y	1.00	4	0.0	4	0;0	y	0.80	2	0.5	2	0;1	y	1.00	15	0.0	15	0;0	y	0.78	7	2.0	7	0;4	y	1.00	7	0.0	7	0;0	y	ENSMUSG00000040407.19	Akap9	chr5	protein_coding	A kinase (PRKA) anchor protein (yotiao) 9
novel_NIR_15131	chr5	4080052;4081149	4081111;4082681	+	4080052	4082681	cassetteExon	ENSMUST00000044492.10	novel	0.00	0.0	11	0;0	11	n	0.00	0.0	6	0;0	6	n	0.09	2.0	21	3;1	21	n	0.07	1.0	13	0;2	13	n	0.02	0.5	29	1;0	29	n	0.00	0.0	9	0;0	9	n	0.17	3.5	17	2;5	17	y	0.00	0.0	17	0;0	17	n	0.13	1.5	10	1;2	10	n	0.00	0.0	28	0;0	28	n	0.00	0.0	6	0;0	6	n	0.00	0.0	14	0;0	14	n	ENSMUSG00000040407.19	Akap9	chr5	protein_coding	A kinase (PRKA) anchor protein (yotiao) 9
novel_NIR_15132	chr5	41971538	41974343	-	41971538	41973551	A5SS	ENSMUST00000050556.11	novel	0.10	1	9	1	9	n	0.00	0	3	0	3	n	0.20	3	12	3	12	y	0.17	1	5	1	5	n	0.39	7	11	7	11	y	0.00	0	1	0	1	n	0.14	1	6	1	6	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.20	2	8	2	8	y	0.75	3	1	3	1	y	0.00	0	6	0	6	n	ENSMUSG00000061755.11	Bod1l	chr5	protein_coding	biorientation of chromosomes in cell division 1-like
novel_NIR_15133	chr5	41971538	41981312	-	41971538;41979503	41973551;41981312	ES	ENSMUST00000050556.11	novel	0.29	3	7.5	3	9;6	y	0.00	0	2.0	0	3;1	n	0.00	0	9.5	0	12;7	n	0.00	0	4.0	0	5;3	n	0.11	1	8.0	1	11;5	n	0.00	0	1.0	0	1;1	n	0.00	0	5.0	0	6;4	n	0.00	0	3.5	0	0;7	n	0.00	0	2.5	0	3;2	n	0.00	0	5.5	0	8;3	n	0.00	0	0.5	0	1;0	n	0.00	0	5.0	0	6;4	n	ENSMUSG00000061755.11	Bod1l	chr5	protein_coding	biorientation of chromosomes in cell division 1-like
novel_NIR_15134	chr5	41971547	41973551	-	41971538	41973551	A3SS	ENSMUST00000050556.11	novel	0.10	1	9	1	9	n	0.25	1	3	1	3	n	0.00	0	12	0	12	n	0.44	4	5	4	5	y	0.39	7	11	7	11	y	0.00	0	1	0	1	n	0.50	6	6	6	6	y	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.11	1	8	1	8	n	0.00	0	1	0	1	n	0.50	6	6	6	6	y	ENSMUSG00000061755.11	Bod1l	chr5	protein_coding	biorientation of chromosomes in cell division 1-like
novel_NIR_15135	chr5	43183990	43188064	-	43183990	43187126	A5SS&ES	ENSMUST00000200967.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000107193.2	Gm43700	chr5	lncRNA	predicted gene 43700
novel_NIR_15136	chr5	43344948	43375844	-	43344948	43346174	A5SS&ES	ENSMUST00000187409.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000085720.9	Gm7854	chr5	lncRNA	predicted gene 7854
novel_NIR_15137	chr5	43344948	43375844	-	43344948	43348637	A5SS&ES	ENSMUST00000187911.7	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000085720.9	Gm7854	chr5	lncRNA	predicted gene 7854
novel_NIR_15138	chr5	43348747	43375844	-	43348747	43392295	A5SS	ENSMUST00000187911.7	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	ENSMUSG00000085720.9	Gm7854	chr5	lncRNA	predicted gene 7854
novel_NIR_15139	chr5	43931001	43943120	-	43931001	43978883	A5SS	ENSMUST00000114047.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000039753.17	Fbxl5	chr5	protein_coding	F-box and leucine-rich repeat protein 5
novel_NIR_15140	chr5	44351733	44361552	-	44356720	44361552	A3SS&ES	ENSMUST00000197266.5	novel	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	10	0	10	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.40	4	6	4	6	y	ENSMUSG00000046985.12	Tapt1	chr5	protein_coding	transmembrane anterior posterior transformation 1
novel_NIR_15141	chr5	44636583	44637568	-	44636586	44637568	A3SS	ENSMUST00000199534.5	novel	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.25	2	6	2	6	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.40	2	3	2	3	y	ENSMUSG00000039706.12	Ldb2	chr5	protein_coding	LIM domain binding 2
novel_NIR_15142	chr5	45595378	45596627	-	45592020	45596627	A3SS	ENSMUST00000197946.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000015806.13	Qdpr	chr5	protein_coding	quinoid dihydropteridine reductase
novel_NIR_15143	chr5	45600919	45601024	-	45600919	45601854	A5SS	ENSMUST00000149290.3	novel	0.22	2	7	2	7	y	0.33	1	2	1	2	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.20	2	8	2	8	y	0.07	1	13	1	13	n	0.00	0	10	0	10	n	0.27	4	11	4	11	y	0.07	1	14	1	14	n	0.10	2	18	2	18	n	0.00	0	19	0	19	n	ENSMUSG00000015806.13	Qdpr	chr5	protein_coding	quinoid dihydropteridine reductase
novel_NIR_15144	chr5	45600919	45601024	-	45600919	45604918	A5SS	ENSMUST00000198258.5	novel	0.33	2	4	2	4	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.67	2	1	2	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.57	4	3	4	3	y	0.17	1	5	1	5	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	ENSMUSG00000015806.13	Qdpr	chr5	protein_coding	quinoid dihydropteridine reductase
novel_NIR_15145	chr5	45600919	45601776	-	45600919	45601854	A5SS	ENSMUST00000149290.3	novel	0.12	1	7	1	7	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.19	3	13	3	13	y	0.20	2	8	2	8	y	0.07	1	13	1	13	n	0.00	0	10	0	10	n	0.08	1	11	1	11	n	0.00	0	14	0	14	n	0.00	0	18	0	18	n	0.14	3	19	3	19	n	ENSMUSG00000015806.13	Qdpr	chr5	protein_coding	quinoid dihydropteridine reductase
novel_NIR_15146	chr5	45600919	45601776	-	45600919	45604918	A5SS	ENSMUST00000198258.5	novel	0.20	1	4	1	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	3	3	3	3	y	0.67	2	1	2	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.75	3	1	3	1	y	ENSMUSG00000015806.13	Qdpr	chr5	protein_coding	quinoid dihydropteridine reductase
novel_NIR_15147	chr5	45602049	45604918	-	45600919	45604918	A3SS	ENSMUST00000198258.5	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	ENSMUSG00000015806.13	Qdpr	chr5	protein_coding	quinoid dihydropteridine reductase
novel_NIR_15148	chr5	45605010	45606448	-	45605010	45605435	5pMXE	ENSMUST00000117425.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000015806.13	Qdpr	chr5	protein_coding	quinoid dihydropteridine reductase
novel_NIR_15149	chr5	45605010	45606448	-	45605010	45605934	A5SS&ES	ENSMUST00000127562.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.50	1	1	1	1	n	ENSMUSG00000015806.13	Qdpr	chr5	protein_coding	quinoid dihydropteridine reductase
novel_NIR_15150	chr5	45605010	45606448	-	45605010	45607224	A5SS	ENSMUST00000120867.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000015806.13	Qdpr	chr5	protein_coding	quinoid dihydropteridine reductase
novel_NIR_15151	chr5	45605010	45606448	-	45605010	45607432	A5SS	ENSMUST00000198258.5	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.17	1	5	1	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.17	1	5	1	5	n	0.00	0	6	0	6	n	0.25	2	6	2	6	y	0.07	1	13	1	13	n	ENSMUSG00000015806.13	Qdpr	chr5	protein_coding	quinoid dihydropteridine reductase
novel_NIR_15152	chr5	45605010	45606677	-	45605010	45605435	5pMXE	ENSMUST00000117425.8	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	12	0	12	0	y	1.00	8	0	8	0	y	1.00	11	0	11	0	y	ENSMUSG00000015806.13	Qdpr	chr5	protein_coding	quinoid dihydropteridine reductase
novel_NIR_15153	chr5	45605010	45606677	-	45605010	45605934	A5SS&ES	ENSMUST00000127562.3	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.83	5	1	5	1	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	12	0	12	0	y	1.00	8	0	8	0	y	0.92	11	1	11	1	y	ENSMUSG00000015806.13	Qdpr	chr5	protein_coding	quinoid dihydropteridine reductase
novel_NIR_15154	chr5	45605010	45606677	-	45605010	45607224	A5SS	ENSMUST00000120867.8	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.60	3	2	3	2	y	0.00	0	2	0	2	n	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	0.86	12	2	12	2	y	1.00	8	0	8	0	y	1.00	11	0	11	0	y	ENSMUSG00000015806.13	Qdpr	chr5	protein_coding	quinoid dihydropteridine reductase
novel_NIR_15155	chr5	45605010	45606677	-	45605010	45607432	A5SS	ENSMUST00000198258.5	novel	0.67	4	2	4	2	y	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	9	0	9	n	0.38	3	5	3	5	y	-	-	-	-	-	-	0.83	5	1	5	1	y	1.00	2	0	2	0	y	0.38	3	5	3	5	y	0.67	12	6	12	6	y	0.57	8	6	8	6	y	0.46	11	13	11	13	y	ENSMUSG00000015806.13	Qdpr	chr5	protein_coding	quinoid dihydropteridine reductase
novel_NIR_15156	chr5	45605010	45607410	-	45605010	45605435	5pMXE	ENSMUST00000117425.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000015806.13	Qdpr	chr5	protein_coding	quinoid dihydropteridine reductase
novel_NIR_15157	chr5	45605010	45607410	-	45605010	45605934	A5SS&ES	ENSMUST00000127562.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000015806.13	Qdpr	chr5	protein_coding	quinoid dihydropteridine reductase
novel_NIR_15158	chr5	45605010	45607410	-	45605010	45607224	5pMXE	ENSMUST00000120867.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000015806.13	Qdpr	chr5	protein_coding	quinoid dihydropteridine reductase
novel_NIR_15159	chr5	45605010	45607410	-	45605010	45607432	A5SS	ENSMUST00000198258.5	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	ENSMUSG00000015806.13	Qdpr	chr5	protein_coding	quinoid dihydropteridine reductase
novel_NIR_15160	chr5	45668559	45679778	+	45678493	45679778	5pMXE	ENSMUST00000015948.14	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	ENSMUSG00000015804.15	Med28	chr5	protein_coding	mediator complex subunit 28
novel_NIR_15161	chr5	45859339	45890996	-	45859339	45880316	A5SS&ES	ENSMUST00000238522.2	novel	0.50	2	2	2	2	y	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	3	0	3	n	1.00	3	0	3	0	y	1.00	3	0	3	0	y	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.50	1	1	1	1	n	0.36	4	7	4	7	y	ENSMUSG00000015882.19	Lcorl	chr5	protein_coding	ligand dependent nuclear receptor corepressor-like
novel_NIR_15162	chr5	45859339	45890996	-	45859339	45893073	A5SS	ENSMUST00000045586.13	novel	0.33	2	4	2	4	y	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	1.00	3	0	3	0	y	1.00	3	0	3	0	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.25	1	3	1	3	n	0.50	4	4	4	4	y	ENSMUSG00000015882.19	Lcorl	chr5	protein_coding	ligand dependent nuclear receptor corepressor-like
novel_NIR_15163	chr5	45859339	45890996	-	45859339	45904398	A5SS	ENSMUST00000190036.7	novel	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.43	3	4	3	4	y	0.50	3	3	3	3	y	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.12	1	7	1	7	n	0.80	4	1	4	1	y	ENSMUSG00000015882.19	Lcorl	chr5	protein_coding	ligand dependent nuclear receptor corepressor-like
novel_NIR_15164	chr5	48536806	48539129	+	48536806	48537466	3pMXE	ENSMUST00000196604.2	novel	0.30	3	7	3	7	y	0.07	1	13	1	13	n	0.11	2	17	2	17	n	0.10	1	9	1	9	n	0.19	3	13	3	13	y	0.10	1	9	1	9	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.06	1	15	1	15	n	0.00	0	17	0	17	n	0.05	1	19	1	19	n	0.17	2	10	2	10	y	ENSMUSG00000029089.9	5730480H06Rik	chr5	protein_coding	RIKEN cDNA 5730480H06 gene
novel_NIR_15165	chr5	48536806	48539129	+	48536806;48537573	48537466;48539129	ES	ENSMUST00000196950.5	novel	0.21	3	11.0	3	7;15	y	0.07	1	13.5	1	13;14	n	0.10	2	18.5	2	17;20	n	0.11	1	8.0	1	9;7	n	0.20	3	12.0	3	13;11	y	0.10	1	9.0	1	9;9	n	0.00	0	12.0	0	11;13	n	0.00	0	6.0	0	7;5	n	0.07	1	13.5	1	15;12	n	0.00	0	9.5	0	17;2	n	0.05	1	18.0	1	19;17	n	0.12	2	14.5	2	10;19	n	ENSMUSG00000029089.9	5730480H06Rik	chr5	protein_coding	RIKEN cDNA 5730480H06 gene
novel_NIR_15166	chr5	48536806	48539129	+	48537573	48539129	5pMXE	ENSMUST00000197915.2	novel	0.17	3	15	3	15	y	0.07	1	14	1	14	n	0.09	2	20	2	20	n	0.12	1	7	1	7	n	0.21	3	11	3	11	y	0.10	1	9	1	9	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.08	1	12	1	12	n	0.00	0	2	0	2	n	0.06	1	17	1	17	n	0.10	2	19	2	19	n	ENSMUSG00000029089.9	5730480H06Rik	chr5	protein_coding	RIKEN cDNA 5730480H06 gene
novel_NIR_15167	chr5	50208302	50208479	-	50208302	50215476	A5SS	ENSMUST00000196915.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.67	2	1	2	1	y	1.00	1	0	1	0	n	1.00	3	0	3	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000029090.13	Adgra3	chr5	protein_coding	adhesion G protein-coupled receptor A3
novel_NIR_15168	chr5	50208302	50215894	-	50208302;50215685	50215476;50215894	ES	ENSMUST00000196915.5	novel	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	0.80	2	0.5	2	1;0	y	-	-	-	-	-	-	0.00	0	1.5	0	1;2	n	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1.0	0	0;2	n	0.00	0	0.5	0	0;1	n	ENSMUSG00000029090.13	Adgra3	chr5	protein_coding	adhesion G protein-coupled receptor A3
novel_NIR_15169	chr5	50208302	50215894	-	50215685	50215894	3pMXE	ENSMUST00000199132.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000029090.13	Adgra3	chr5	protein_coding	adhesion G protein-coupled receptor A3
novel_NIR_15170	chr5	51706033	51710018	-	51706033	51711077	A5SS	ENSMUST00000132734.8	novel	0.00	0	8	0	8	n	-	-	-	-	-	-	0.10	1	9	1	9	n	0.00	0	5	0	5	n	0.11	1	8	1	8	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.67	4	2	4	2	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	ENSMUSG00000029167.14	Ppargc1a	chr5	protein_coding	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
novel_NIR_15171	chr5	51706033	51710018	-	51706033	51724972	A5SS	ENSMUST00000151104.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029167.14	Ppargc1a	chr5	protein_coding	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
novel_NIR_15172	chr5	52311506	52317572	-	52314911	52317572	A3SS&ES	ENSMUST00000200186.5	novel	0.50	5	5	5	5	y	-	-	-	-	-	-	0.00	0	16	0	16	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	ENSMUSG00000029169.12	Dhx15	chr5	protein_coding	DEAH (Asp-Glu-Ala-His) box polypeptide 15
novel_NIR_15173	chr5	52342240	52347622	-	52328925	52347622	A3SS	ENSMUST00000195922.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	ENSMUSG00000029169.12	Dhx15	chr5	protein_coding	DEAH (Asp-Glu-Ala-His) box polypeptide 15
novel_NIR_15174	chr5	52940556	52942440	+	52932936	52942440	A5SS	ENSMUST00000113901.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000029179.15	Zcchc4	chr5	protein_coding	zinc finger, CCHC domain containing 4
novel_NIR_15175	chr5	52940556	52942440	+	52940556;52941449	52941331;52942440	ES	ENSMUST00000031077.13	novel	0.00	0	4.0	0	2;6	n	0.00	0	3.5	0	2;5	n	0.00	0	4.5	0	7;2	n	0.00	0	5.5	0	7;4	n	0.25	2	6.0	2	5;7	y	0.00	0	3.5	0	3;4	n	0.00	0	8.0	0	11;5	n	0.00	0	3.0	0	4;2	n	0.00	0	1.5	0	1;2	n	0.00	0	7.5	0	9;6	n	0.10	1	9.0	1	8;10	n	0.00	0	6.0	0	5;7	n	ENSMUSG00000029179.15	Zcchc4	chr5	protein_coding	zinc finger, CCHC domain containing 4
novel_NIR_15176	chr5	52960139	52961721	+	52954001	52961721	A5SS	ENSMUST00000113901.8	novel	0.20	1	4	1	4	n	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.25	2	6	2	6	y	0.25	1	3	1	3	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.08	1	11	1	11	n	ENSMUSG00000029179.15	Zcchc4	chr5	protein_coding	zinc finger, CCHC domain containing 4
novel_NIR_15177	chr5	52960139	52961721	+	52955487	52961721	A5SS	ENSMUST00000149612.8	novel	1.00	1	0	1	0	n	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	1	1	1	1	n	ENSMUSG00000029179.15	Zcchc4	chr5	protein_coding	zinc finger, CCHC domain containing 4
novel_NIR_15178	chr5	53002749	53004008	+	53002749	53005333	A3SS	ENSMUST00000198207.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029176.14	Anapc4	chr5	protein_coding	anaphase promoting complex subunit 4
novel_NIR_15179	chr5	53130604;53139877	53139671;53147931	-	53130604	53147931	cassetteExon	ENSMUST00000198248.5	novel	0.20	23.5	97	21;26	97	y	0.10	10.5	90	6;15	90	n	0.00	0.0	51	0;0	51	n	0.14	10.5	62	10;11	62	n	0.15	15.0	83	10;20	83	y	0.07	1.5	20	2;1	20	n	0.12	14.0	107	16;12	107	n	0.02	0.5	31	1;0	31	n	0.15	18.0	106	23;13	106	y	0.14	24.5	147	14;35	147	n	0.09	12.5	122	13;12	122	n	0.10	12.5	114	10;15	114	n	ENSMUSG00000106352.5	5033403H07Rik	chr5	lncRNA	RIKEN cDNA 5033403H07 gene
novel_NIR_15180	chr5	53150200	53151403	+	53147089	53151403	A5SS	ENSMUST00000199474.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000106538.2	Gm30301	chr5	lncRNA	predicted gene, 30301
novel_NIR_15181	chr5	53358120	53370472	-	53358120	53371211	A5SS	ENSMUST00000199919.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029189.11	Sel1l3	chr5	protein_coding	sel-1 suppressor of lin-12-like 3 (C. elegans)
novel_NIR_15182	chr5	53424929	53434485	+	53425673	53434485	A5SS&ES	ENSMUST00000204218.3	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000061461.12	Smim20	chr5	protein_coding	small integral membrane protein 20
novel_NIR_15183	chr5	53425452	53434485	+	53425412	53434485	A5SS	ENSMUST00000204465.2	novel	0.50	4	4	4	4	y	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.14	1	6	1	6	n	0.08	1	12	1	12	n	0.18	2	9	2	9	y	0.25	1	3	1	3	n	1.00	1	0	1	0	n	0.18	2	9	2	9	y	0.13	2	13	2	13	n	0.20	1	4	1	4	n	0.00	0	5	0	5	n	ENSMUSG00000061461.12	Smim20	chr5	protein_coding	small integral membrane protein 20
novel_NIR_15184	chr5	53425452	53434485	+	53425673	53434485	A5SS	ENSMUST00000204218.3	novel	0.57	4	3	4	3	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.25	1	3	1	3	n	1.00	2	0	2	0	y	0.14	1	6	1	6	n	0.33	1	2	1	2	n	1.00	2	0	2	0	y	0.67	2	1	2	1	y	0.33	1	2	1	2	n	0.00	0	1	0	1	n	ENSMUSG00000061461.12	Smim20	chr5	protein_coding	small integral membrane protein 20
novel_NIR_15185	chr5	53426059	53434485	+	53425412	53434485	A5SS	ENSMUST00000204465.2	novel	0.00	0	4	0	4	n	0.10	1	9	1	9	n	0.11	1	8	1	8	n	0.45	5	6	5	6	y	0.25	4	12	4	12	y	0.00	0	9	0	9	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.18	2	9	2	9	y	0.07	1	13	1	13	n	0.33	2	4	2	4	y	0.38	3	5	3	5	y	ENSMUSG00000061461.12	Smim20	chr5	protein_coding	small integral membrane protein 20
novel_NIR_15186	chr5	53426059	53434485	+	53425673	53434485	A5SS	ENSMUST00000204218.3	novel	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.50	1	1	1	1	n	1.00	5	0	5	0	y	0.57	4	3	4	3	y	-	-	-	-	-	-	0.00	0	6	0	6	n	0.33	1	2	1	2	n	1.00	2	0	2	0	y	0.50	1	1	1	1	n	0.50	2	2	2	2	y	0.75	3	1	3	1	y	ENSMUSG00000061461.12	Smim20	chr5	protein_coding	small integral membrane protein 20
novel_NIR_15187	chr5	53987842	53992514	+	53987842	53990312	A3SS&ES	ENSMUST00000201727.4	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.50	1	1	1	1	n	0.00	0	7	0	7	n	ENSMUSG00000039178.10	Tbc1d19	chr5	protein_coding	TBC1 domain family, member 19
novel_NIR_15188	chr5	53987842	53992514	+	53987842;53990387	53990312;53992514	ES	ENSMUST00000037337.10	novel	0.00	0	3.5	0	3;4	n	0.00	0	1.0	0	1;1	n	0.00	0	3.5	0	0;7	n	0.00	0	4.5	0	3;6	n	0.00	0	3.5	0	4;3	n	0.00	0	3.0	0	1;5	n	0.00	0	3.0	0	1;5	n	0.44	2	2.5	2	1;4	y	0.00	0	3.5	0	4;3	n	0.00	0	5.5	0	5;6	n	0.25	1	3.0	1	1;5	n	0.00	0	7.0	0	7;7	n	ENSMUSG00000039178.10	Tbc1d19	chr5	protein_coding	TBC1 domain family, member 19
novel_NIR_15189	chr5	53987842	53992514	+	53990387	53992514	A5SS&ES	ENSMUST00000202528.4	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.17	1	5	1	5	n	0.00	0	7	0	7	n	ENSMUSG00000039178.10	Tbc1d19	chr5	protein_coding	TBC1 domain family, member 19
novel_NIR_15190	chr5	54014264	54014664	+	54014264	54017486	A3SS	ENSMUST00000037337.10	novel	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.67	2	1	2	1	y	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000039178.10	Tbc1d19	chr5	protein_coding	TBC1 domain family, member 19
novel_NIR_15191	chr5	5558454	5563162	-	5561194	5563162	3pMXE	ENSMUST00000134931.2	novel	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000046798.15	Cldn12	chr5	protein_coding	claudin 12
novel_NIR_15192	chr5	5560123	5561071	-	5539595	5561071	A3SS	ENSMUST00000198303.5	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000046798.15	Cldn12	chr5	protein_coding	claudin 12
novel_NIR_15193	chr5	5563223	5564232	-	5563223	5564765	A5SS	ENSMUST00000115446.8	novel	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.10	1	9	1	9	n	ENSMUSG00000046798.15	Cldn12	chr5	protein_coding	claudin 12
novel_NIR_15194	chr5	5563223	5564232	-	5563251	5564232	A3SS	ENSMUST00000179804.8	novel	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.12	1	7	1	7	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.12	1	7	1	7	n	ENSMUSG00000046798.15	Cldn12	chr5	protein_coding	claudin 12
novel_NIR_15195	chr5	5563223	5564628	-	5563223	5564765	A5SS	ENSMUST00000115446.8	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.50	4	4	4	4	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.67	2	1	2	1	y	1.00	1	0	1	0	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	ENSMUSG00000046798.15	Cldn12	chr5	protein_coding	claudin 12
novel_NIR_15196	chr5	5563223	5564628	-	5563251	5564628	A3SS	ENSMUST00000115445.8	novel	0.00	0	19	0	19	n	0.00	0	5	0	5	n	0.13	4	27	4	27	n	0.00	0	21	0	21	n	0.00	0	32	0	32	n	0.07	1	13	1	13	n	0.00	0	23	0	23	n	0.17	2	10	2	10	y	0.10	1	9	1	9	n	0.00	0	20	0	20	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	ENSMUSG00000046798.15	Cldn12	chr5	protein_coding	claudin 12
novel_NIR_15197	chr5	5564376	5564628	-	5564376	5564765	A5SS	ENSMUST00000179804.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000046798.15	Cldn12	chr5	protein_coding	claudin 12
novel_NIR_15198	chr5	5589451	5592247	-	5589451	5592302	A5SS	ENSMUST00000115441.9	novel	0.03	1	36	1	36	n	0.17	7	33	7	33	y	0.17	8	38	8	38	y	0.11	3	24	3	24	n	0.23	9	31	9	31	y	0.08	2	23	2	23	n	0.07	3	37	3	37	n	0.09	2	20	2	20	n	0.03	1	36	1	36	n	0.09	4	43	4	43	n	0.00	0	31	0	31	n	0.16	7	36	7	36	y	ENSMUSG00000040464.16	Gtpbp10	chr5	protein_coding	GTP-binding protein 10 (putative)
novel_NIR_15199	chr5	5638385	5639120	-	5636432	5639120	A3SS	ENSMUST00000148347.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040473.16	Cfap69	chr5	protein_coding	cilia and flagella associated protein 69
novel_NIR_15200	chr5	5638385	5639120	-	5637278	5639120	A3SS	ENSMUST00000054865.13	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.60	3	2	3	2	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000040473.16	Cfap69	chr5	protein_coding	cilia and flagella associated protein 69
novel_NIR_15201	chr5	62796379	62800138	-	62796379;62798739	62798671;62800138	ES	ENSMUST00000076623.8	novel	0.00	0	1.5	0	2;1	n	0.52	6	5.5	6	7;4	y	0.57	6	4.5	6	4;5	y	0.75	9	3.0	9	3;3	y	0.69	10	4.5	10	3;6	y	0.00	0	6.0	0	5;7	n	0.40	3	4.5	3	4;5	y	0.13	1	6.5	1	5;8	n	0.62	4	2.5	4	5;0	y	0.51	9	8.5	9	13;4	y	0.46	3	3.5	3	5;2	y	0.65	15	8.0	15	7;9	y	ENSMUSG00000037999.14	Arap2	chr5	protein_coding	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
novel_NIR_15202	chr5	62826534	62827223	-	62826568	62827223	A3SS	ENSMUST00000076623.8	novel	0.10	1	9	1	9	n	0.17	1	5	1	5	n	0.15	2	11	2	11	y	0.00	0	8	0	8	n	0.07	1	13	1	13	n	0.07	1	14	1	14	n	0.00	0	11	0	11	n	0.00	0	17	0	17	n	0.00	0	4	0	4	n	0.00	0	15	0	15	n	0.00	0	2	0	2	n	0.00	0	20	0	20	n	ENSMUSG00000037999.14	Arap2	chr5	protein_coding	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
novel_NIR_15203	chr5	63946075	63948787	+	63902640	63948787	A5SS	ENSMUST00000160066.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000090061.10	Nwd2	chr5	protein_coding	NACHT and WD repeat domain containing 2
novel_NIR_15204	chr5	63969938	64053773	+	64034930	64053773	5pMXE	ENSMUST00000199667.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000060512.8	0610040J01Rik	chr5	protein_coding	RIKEN cDNA 0610040J01 gene
novel_NIR_15205	chr5	64033842	64041300	+	64033842	64045388	A3SS	ENSMUST00000196575.5	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	ENSMUSG00000060512.8	0610040J01Rik	chr5	protein_coding	RIKEN cDNA 0610040J01 gene
novel_NIR_15206	chr5	64033842	64042922	+	64033842	64045388	A3SS	ENSMUST00000196575.5	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.33	1	2	1	2	n	ENSMUSG00000060512.8	0610040J01Rik	chr5	protein_coding	RIKEN cDNA 0610040J01 gene
novel_NIR_15207	chr5	64269540	64270878	+	64269540	64285120	A3SS	ENSMUST00000197577.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029171.13	Pgm2	chr5	protein_coding	phosphoglucomutase 2
novel_NIR_15208	chr5	64451638	64468402	+	64443427	64468402	A5SS	ENSMUST00000043893.13	novel	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.67	2	1	2	1	y	ENSMUSG00000029174.19	Tbc1d1	chr5	protein_coding	TBC1 domain family, member 1
novel_NIR_15209	chr5	64451638	64468402	+	64455947	64468402	5pMXE	ENSMUST00000140960.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000029174.19	Tbc1d1	chr5	protein_coding	TBC1 domain family, member 1
novel_NIR_15210	chr5	64484212	64490690	+	64481952	64490690	A5SS	ENSMUST00000043893.13	novel	0.11	1	8	1	8	n	0.20	2	8	2	8	y	0.00	0	7	0	7	n	0.60	3	2	3	2	y	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.30	3	7	3	7	y	0.17	1	5	1	5	n	-	-	-	-	-	-	0.29	2	5	2	5	y	0.00	0	6	0	6	n	0.00	0	4	0	4	n	ENSMUSG00000029174.19	Tbc1d1	chr5	protein_coding	TBC1 domain family, member 1
novel_NIR_15211	chr5	64501950	64502595	+	64497074	64502595	A5SS	ENSMUST00000043893.13	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.07	1	13	1	13	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.17	2	10	2	10	y	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	ENSMUSG00000029174.19	Tbc1d1	chr5	protein_coding	TBC1 domain family, member 1
novel_NIR_15212	chr5	64969846	64972747	+	64969846	64974079	A3SS	ENSMUST00000166409.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029178.15	Klf3	chr5	protein_coding	Kruppel-like factor 3 (basic)
novel_NIR_15213	chr5	65306144	65306881	+	65306144	65309979	A3SS	ENSMUST00000203561.2	novel	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.60	3	2	3	2	y	1.00	5	0	5	0	y	0.86	6	1	6	1	y	1.00	1	0	1	0	n	0.25	1	3	1	3	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.86	6	1	6	1	y	1.00	3	0	3	0	y	0.00	0	1	0	1	n	ENSMUSG00000054920.13	Klhl5	chr5	protein_coding	kelch-like 5
novel_NIR_15214	chr5	65506511	65529299	+	65506579	65529299	A5SS	ENSMUST00000031096.11	novel	0.04	1	26	1	26	n	0.00	0	12	0	12	n	0.00	0	38	0	38	n	0.05	1	21	1	21	n	0.02	2	83	2	83	n	0.08	2	23	2	23	n	0.04	2	49	2	49	n	0.03	1	39	1	39	n	0.03	1	30	1	30	n	0.02	1	48	1	48	n	0.16	5	26	5	26	y	0.08	5	57	5	57	n	ENSMUSG00000029195.11	Klb	chr5	protein_coding	klotho beta
novel_NIR_15215	chr5	65529553	65529658	+	65529553	65533023	A3SS	ENSMUST00000205084.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000029195.11	Klb	chr5	protein_coding	klotho beta
novel_NIR_15216	chr5	65529553	65529662	+	65529553	65533023	A3SS	ENSMUST00000205084.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029195.11	Klb	chr5	protein_coding	klotho beta
novel_NIR_15217	chr5	65584927	65587779	-	65584927	65585657	5pMXE	ENSMUST00000131263.3	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000029201.15	Ugdh	chr5	protein_coding	UDP-glucose dehydrogenase
novel_NIR_15218	chr5	65584927	65587779	-	65584927	65625736	A5SS	ENSMUST00000196121.2	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000105835.2	Gm43552	chr5	protein_coding	predicted gene 43552
novel_NIR_15219	chr5	65584927	65592971	-	65584927	65585657	5pMXE	ENSMUST00000131263.3	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000029201.15	Ugdh	chr5	protein_coding	UDP-glucose dehydrogenase
novel_NIR_15220	chr5	65584927	65592971	-	65584927	65625736	A5SS	ENSMUST00000196121.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000105835.2	Gm43552	chr5	protein_coding	predicted gene 43552
novel_NIR_15221	chr5	65607774	65610529	-	65608160	65610529	A3SS&ES	ENSMUST00000040532.12	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	5	0	5	0	y	1.00	2	0	2	0	y	ENSMUSG00000037822.13	Smim14	chr5	protein_coding	small integral membrane protein 14
novel_NIR_15222	chr5	65607780	65608647	-	65607780	65608055	A5SS&ES	ENSMUST00000040532.12	novel	-	-	-	-	-	-	1.00	3	0	3	0	n	1.00	5	0	5	0	n	1.00	4	0	4	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	n	-	-	-	-	-	-	1.00	3	0	3	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	n	1.00	4	0	4	0	n	ENSMUSG00000037822.13	Smim14	chr5	protein_coding	small integral membrane protein 14
novel_NIR_15223	chr5	65607780	65610531	-	65607780	65608055	A5SS&ES	ENSMUST00000040532.12	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000037822.13	Smim14	chr5	protein_coding	small integral membrane protein 14
novel_NIR_15224	chr5	65607780;65608692	65608647;65610529	-	65607780;65608160	65608055;65610529	MXE	ENSMUST00000040532.12	novel	-	-	-	-	-	-	1.00	1.5	0.0	3;0	0;0	n	1.00	2.5	0.0	5;0	0;0	n	1.00	3.0	0.0	4;2	0;0	y	1.00	1.0	0.0	2;0	0;0	n	1.00	0.5	0.0	1;0	0;0	n	1.00	1.5	0.0	3;0	0;0	n	-	-	-	-	-	-	1.00	1.5	0.0	3;0	0;0	n	1.00	0.5	0.0	1;0	0;0	n	1.00	1.0	0.0	2;0	0;0	n	1.00	2.0	0.0	4;0	0;0	n	ENSMUSG00000037822.13	Smim14	chr5	protein_coding	small integral membrane protein 14
novel_NIR_15225	chr5	65607780;65608697	65608647;65610529	-	65607780;65608160	65608055;65610529	MXE	ENSMUST00000040532.12	novel	1.00	2.5	0.0	0;5	0;0	n	1.00	3.0	0.0	3;3	0;0	y	1.00	6.5	0.0	5;8	0;0	y	1.00	4.5	0.0	4;5	0;0	y	1.00	1.0	0.0	2;0	0;0	n	1.00	1.5	0.0	1;2	0;0	n	1.00	2.0	0.0	3;1	0;0	n	1.00	1.0	0.0	0;2	0;0	n	1.00	2.5	0.0	3;2	0;0	y	1.00	2.0	0.0	1;3	0;0	n	1.00	2.0	0.0	2;2	0;0	y	1.00	3.5	0.0	4;3	0;0	y	ENSMUSG00000037822.13	Smim14	chr5	protein_coding	small integral membrane protein 14
novel_NIR_15226	chr5	65608697	65610529	-	65608160	65610529	A3SS	ENSMUST00000040532.12	novel	1.00	5	0	5	0	y	1.00	3	0	3	0	n	1.00	8	0	8	0	n	1.00	5	0	5	0	n	-	-	-	-	-	-	1.00	2	0	2	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	n	1.00	3	0	3	0	n	1.00	2	0	2	0	n	1.00	3	0	3	0	n	ENSMUSG00000037822.13	Smim14	chr5	protein_coding	small integral membrane protein 14
novel_NIR_15227	chr5	65625844	65628044	-	65625844	65650284	A5SS	ENSMUST00000121661.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.18	2	9	2	9	y	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000037822.13	Smim14	chr5	protein_coding	small integral membrane protein 14
novel_NIR_15228	chr5	65625844	65628044	-	65625844	65694132	A5SS	ENSMUST00000149167.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037822.13	Smim14	chr5	protein_coding	small integral membrane protein 14
novel_NIR_15229	chr5	65625844	65634669	-	65625844	65650284	A5SS	ENSMUST00000121661.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.18	2	9	2	9	y	0.50	1	1	1	1	n	0.10	1	9	1	9	n	0.25	1	3	1	3	n	0.33	2	4	2	4	y	0.75	3	1	3	1	y	1.00	2	0	2	0	y	0.75	3	1	3	1	y	0.00	0	2	0	2	n	0.50	1	1	1	1	n	ENSMUSG00000037822.13	Smim14	chr5	protein_coding	small integral membrane protein 14
novel_NIR_15230	chr5	65625844	65634669	-	65625844	65694132	A5SS	ENSMUST00000149167.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000037822.13	Smim14	chr5	protein_coding	small integral membrane protein 14
novel_NIR_15231	chr5	65625844	65642397	-	65625844	65650284	A5SS	ENSMUST00000121661.8	novel	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.00	0	9	0	9	n	0.50	1	1	1	1	n	0.00	0	9	0	9	n	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.67	4	2	4	2	y	0.00	0	1	0	1	n	ENSMUSG00000037822.13	Smim14	chr5	protein_coding	small integral membrane protein 14
novel_NIR_15232	chr5	65625844	65642397	-	65625844	65694132	A5SS	ENSMUST00000149167.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	ENSMUSG00000037822.13	Smim14	chr5	protein_coding	small integral membrane protein 14
novel_NIR_15233	chr5	65625844	65649180	-	65625844	65650284	A5SS	ENSMUST00000121661.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.18	2	9	2	9	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000037822.13	Smim14	chr5	protein_coding	small integral membrane protein 14
novel_NIR_15234	chr5	65625844	65649180	-	65625844	65694132	A5SS	ENSMUST00000149167.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037822.13	Smim14	chr5	protein_coding	small integral membrane protein 14
novel_NIR_15235	chr5	65694889	65749219	+	65694889;65728933	65728875;65749219	ES	ENSMUST00000200946.3	novel	0.00	0	5.0	0	8;2	n	0.00	0	6.0	0	12;0	n	0.22	2	7.0	2	14;0	y	0.00	0	4.5	0	8;1	n	0.12	1	7.0	1	13;1	n	0.00	0	3.0	0	6;0	n	0.00	0	8.5	0	17;0	n	0.00	0	4.0	0	6;2	n	0.00	0	7.0	0	14;0	n	0.20	1	4.0	1	8;0	n	0.50	4	4.0	4	8;0	y	0.00	0	7.0	0	12;2	n	ENSMUSG00000029203.17	Ube2k	chr5	protein_coding	ubiquitin-conjugating enzyme E2K
novel_NIR_15236	chr5	65695249	65723332	+	65694801	65723332	A5SS	ENSMUST00000201292.4	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000029203.17	Ube2k	chr5	protein_coding	ubiquitin-conjugating enzyme E2K
novel_NIR_15237	chr5	65767538	65772607	-	65767538	65772602	A5SS	ENSMUST00000201948.4	novel	1.00	89	0	89	0	y	1.00	68	0	68	0	y	1.00	80	0	80	0	y	1.00	74	0	74	0	y	1.00	108	0	108	0	y	1.00	56	0	56	0	y	1.00	109	0	109	0	y	1.00	51	0	51	0	y	1.00	51	0	51	0	y	1.00	118	0	118	0	y	1.00	95	0	95	0	y	1.00	73	0	73	0	y	ENSMUSG00000029202.13	Pds5a	chr5	protein_coding	PDS5 cohesin associated factor A
novel_NIR_15238	chr5	65767538	65776287	-	65767531	65776287	A3SS	ENSMUST00000202648.4	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000029202.13	Pds5a	chr5	protein_coding	PDS5 cohesin associated factor A
novel_NIR_15239	chr5	65776398	65776963	-	65776395	65776963	A3SS	ENSMUST00000201948.4	novel	0.13	12	82	12	82	n	0.18	11	49	11	49	y	0.34	37	73	37	73	y	0.19	17	72	17	72	y	0.20	25	101	25	101	y	0.32	18	38	18	38	y	0.18	20	90	20	90	y	0.22	11	39	11	39	y	0.14	10	61	10	61	n	0.16	14	76	14	76	y	0.23	18	60	18	60	y	0.23	24	81	24	81	y	ENSMUSG00000029202.13	Pds5a	chr5	protein_coding	PDS5 cohesin associated factor A
novel_NIR_15240	chr5	65943704	65947361	+	65933006	65947361	A5SS	ENSMUST00000201615.4	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	10	0	10	0	y	1.00	5	0	5	0	y	1.00	3	0	3	0	y	0.80	4	1	4	1	y	1.00	8	0	8	0	y	1.00	8	0	8	0	y	1.00	5	0	5	0	y	1.00	7	0	7	0	y	1.00	2	0	2	0	y	ENSMUSG00000037795.15	N4bp2	chr5	protein_coding	NEDD4 binding protein 2
novel_NIR_15241	chr5	65943704	65947361	+	65943704;65945484	65945396;65947361	ES	ENSMUST00000201489.4	novel	0.67	3	1.5	3	3;0	y	0.00	0	1.5	0	1;2	n	0.67	5	2.5	5	3;2	y	0.62	10	6.0	10	4;8	y	0.67	5	2.5	5	0;5	y	0.46	3	3.5	3	3;4	y	0.67	4	2.0	4	4;0	y	0.80	8	2.0	8	3;1	y	0.80	8	2.0	8	0;4	y	0.83	5	1.0	5	0;2	y	0.93	7	0.5	7	1;0	y	0.40	2	3.0	2	6;0	y	ENSMUSG00000037795.15	N4bp2	chr5	protein_coding	NEDD4 binding protein 2
novel_NIR_15242	chr5	66182499	66183473	-	66180176	66183473	A3SS	ENSMUST00000094756.11	novel	-	-	-	-	-	-	0.75	3	1	3	1	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	ENSMUSG00000070780.12	Rbm47	chr5	protein_coding	RNA binding motif protein 47
novel_NIR_15243	chr5	66255131	66279825	-	66255131	66255502	5pMXE	ENSMUST00000113726.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000070780.12	Rbm47	chr5	protein_coding	RNA binding motif protein 47
novel_NIR_15244	chr5	66255131	66279825	-	66255131	66307859	A5SS	ENSMUST00000200775.4	novel	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.17	2	10	2	10	y	0.00	0	15	0	15	n	0.08	1	12	1	12	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.11	1	8	1	8	n	0.00	0	7	0	7	n	0.00	0	18	0	18	n	0.00	0	2	0	2	n	0.00	0	14	0	14	n	ENSMUSG00000070780.12	Rbm47	chr5	protein_coding	RNA binding motif protein 47
novel_NIR_15245	chr5	66255131	66279825	-	66255131	66308396	A5SS	ENSMUST00000201561.4	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000070780.12	Rbm47	chr5	protein_coding	RNA binding motif protein 47
novel_NIR_15246	chr5	66255131	66279825	-	66255131	66308882	A5SS	ENSMUST00000201544.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000070780.12	Rbm47	chr5	protein_coding	RNA binding motif protein 47
novel_NIR_15247	chr5	66308816	66310315	+	66308764	66310315	A5SS	ENSMUST00000180652.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000097092.3	Gm26725	chr5	lncRNA	predicted gene, 26725
novel_NIR_15248	chr5	66310361	66314447	+	66310361;66313570	66313511;66314447	ES	ENSMUST00000180652.3	novel	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	0.00	0	0.5	0	0;1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.55	3	2.5	3	3;2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1.0	1	2;0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000097092.3	Gm26725	chr5	lncRNA	predicted gene, 26725
novel_NIR_15249	chr5	66314507	66322557	+	66314507	66330957	A3SS	ENSMUST00000180652.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000097092.3	Gm26725	chr5	lncRNA	predicted gene, 26725
novel_NIR_15250	chr5	66434685	66435973	+	66434503	66435973	A5SS	ENSMUST00000202994.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029206.14	Nsun7	chr5	protein_coding	NOL1/NOP2/Sun domain family, member 7
novel_NIR_15251	chr5	67418376	67419890	+	67418376	67419821	A3SS	ENSMUST00000162074.8	novel	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000037720.17	Tmem33	chr5	protein_coding	transmembrane protein 33
novel_NIR_15252	chr5	67418376	67419890	+	67418376	67421613	A3SS	ENSMUST00000161233.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037720.17	Tmem33	chr5	protein_coding	transmembrane protein 33
novel_NIR_15253	chr5	67443615	67444353	+	67443559	67444353	A5SS	ENSMUST00000160352.8	novel	0.00	0	35	0	35	n	0.17	5	25	5	25	y	0.00	0	40	0	40	n	0.00	0	37	0	37	n	0.00	0	30	0	30	n	0.05	1	19	1	19	n	0.10	7	64	7	64	n	0.00	0	15	0	15	n	0.18	5	23	5	23	y	0.00	0	42	0	42	n	0.00	0	27	0	27	n	0.00	0	37	0	37	n	ENSMUSG00000037720.17	Tmem33	chr5	protein_coding	transmembrane protein 33
novel_NIR_15254	chr5	67473188	67474046	+	67473188	67476058	A3SS	ENSMUST00000159907.3	novel	0.00	0	13	0	13	n	0.17	1	5	1	5	n	0.78	7	2	7	2	y	0.00	0	10	0	10	n	0.00	0	7	0	7	n	1.00	1	0	1	0	n	0.00	0	6	0	6	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.29	2	5	2	5	y	0.25	3	9	3	9	y	ENSMUSG00000029221.16	Slc30a9	chr5	protein_coding	solute carrier family 30 (zinc transporter), member 9
novel_NIR_15255	chr5	67473188	67474046	+	67473188	67482020	A3SS	ENSMUST00000202770.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.75	3	1	3	1	y	ENSMUSG00000029221.16	Slc30a9	chr5	protein_coding	solute carrier family 30 (zinc transporter), member 9
novel_NIR_15256	chr5	67473188	67474046	+	67473188	67484196	A3SS	ENSMUST00000113676.6	novel	0.00	0	6	0	6	n	0.12	1	7	1	7	n	0.24	7	22	7	22	y	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.17	1	5	1	5	n	0.00	0	10	0	10	n	0.08	1	11	1	11	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.17	2	10	2	10	y	0.19	3	13	3	13	y	ENSMUSG00000029221.16	Slc30a9	chr5	protein_coding	solute carrier family 30 (zinc transporter), member 9
novel_NIR_15257	chr5	67473188	67474046	+	67473188	67485041	A3SS	ENSMUST00000202521.4	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	1.00	3	0	3	0	y	ENSMUSG00000029221.16	Slc30a9	chr5	protein_coding	solute carrier family 30 (zinc transporter), member 9
novel_NIR_15258	chr5	67487294	67488835	+	67487294	67491849	A3SS	ENSMUST00000202521.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029221.16	Slc30a9	chr5	protein_coding	solute carrier family 30 (zinc transporter), member 9
novel_NIR_15259	chr5	69719334	69721867	+	69719200	69721867	A5SS	ENSMUST00000154728.8	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	1.00	2	0	2	0	y	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	ENSMUSG00000029208.17	Guf1	chr5	protein_coding	GUF1 homolog, GTPase
novel_NIR_15260	chr5	69719334	69721867	+	69720565	69721867	A5SS&ES	ENSMUST00000087228.11	novel	0.00	0	16	0	16	n	0.00	0	14	0	14	n	0.07	1	13	1	13	n	0.00	0	19	0	19	n	0.04	1	25	1	25	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.18	2	9	2	9	y	0.06	1	15	1	15	n	0.00	0	15	0	15	n	0.00	0	11	0	11	n	0.00	0	17	0	17	n	ENSMUSG00000029208.17	Guf1	chr5	protein_coding	GUF1 homolog, GTPase
novel_NIR_15261	chr5	69737035	69739573	-	69737035	69742317	A5SS	ENSMUST00000139632.8	novel	0.50	1	1	1	1	n	0.29	2	5	2	5	y	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	ENSMUSG00000029209.16	Gnpda2	chr5	protein_coding	glucosamine-6-phosphate deaminase 2
novel_NIR_15262	chr5	72322849	72325306	-	72322849	72323027	5pMXE	ENSMUST00000196152.2	novel	0.33	1	2	1	2	n	0.75	6	2	6	2	y	1.00	4	0	4	0	y	0.67	4	2	4	2	y	0.73	11	4	11	4	y	0.00	0	1	0	1	n	1.00	9	0	9	0	y	0.20	1	4	1	4	n	0.67	2	1	2	1	y	0.23	3	10	3	10	y	0.82	9	2	9	2	y	0.62	5	3	5	3	y	ENSMUSG00000029213.12	Commd8	chr5	protein_coding	COMM domain containing 8
novel_NIR_15263	chr5	72322849	72325415	-	72322849	72323027	5pMXE	ENSMUST00000196152.2	novel	0.00	0	2	0	2	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.20	1	4	1	4	n	0.75	3	1	3	1	y	0.09	1	10	1	10	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	ENSMUSG00000029213.12	Commd8	chr5	protein_coding	COMM domain containing 8
novel_NIR_15264	chr5	72824279	72825290	+	72824279	72824931	A3SS	ENSMUST00000087212.8	novel	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.25	2	6	2	6	y	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	ENSMUSG00000067219.10	Nipal1	chr5	protein_coding	NIPA-like domain containing 1
novel_NIR_15265	chr5	73198936	73199083	-	73198936	73204294	A5SS	ENSMUST00000146953.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	2	0	2	n	ENSMUSG00000070733.14	Fryl	chr5	protein_coding	FRY like transcription coactivator
novel_NIR_15266	chr5	73198936	73199083	-	73198936	73204863	A5SS	ENSMUST00000202697.4	novel	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	16	0	16	n	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.43	3	4	3	4	y	0.00	0	18	0	18	n	ENSMUSG00000070733.14	Fryl	chr5	protein_coding	FRY like transcription coactivator
novel_NIR_15267	chr5	73450464	73451309	+	73450319	73451309	A5SS	ENSMUST00000202250.4	novel	0.00	0	23	0	23	n	0.13	2	13	2	13	n	0.00	0	17	0	17	n	0.03	1	36	1	36	n	0.00	0	20	0	20	n	0.00	0	6	0	6	n	0.00	0	19	0	19	n	0.00	0	7	0	7	n	0.07	1	14	1	14	n	0.00	0	16	0	16	n	0.17	3	15	3	15	y	0.00	0	14	0	14	n	ENSMUSG00000029152.14	Ociad1	chr5	protein_coding	OCIA domain containing 1
novel_NIR_15268	chr5	73450464	73451309	+	73450825	73451309	A5SS	ENSMUST00000201505.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000029152.14	Ociad1	chr5	protein_coding	OCIA domain containing 1
novel_NIR_15269	chr5	73464141	73467617	+	73464141	73470786	A3SS	ENSMUST00000071081.13	novel	0.67	10	5	10	5	y	0.52	14	13	14	13	y	0.60	3	2	3	2	y	0.38	3	5	3	5	y	0.44	7	9	7	9	y	0.60	3	2	3	2	y	0.42	11	15	11	15	y	0.50	2	2	2	2	y	0.56	9	7	9	7	y	0.68	13	6	13	6	y	0.39	7	11	7	11	y	0.69	18	8	18	8	y	ENSMUSG00000029152.14	Ociad1	chr5	protein_coding	OCIA domain containing 1
novel_NIR_15270	chr5	73493275	73495874	-	73489543	73495874	A3SS	ENSMUST00000200830.4	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.67	4	2	4	2	y	0.17	1	5	1	5	n	0.55	6	5	6	5	y	ENSMUSG00000029153.12	Ociad2	chr5	protein_coding	OCIA domain containing 2
novel_NIR_15271	chr5	73493288	73494515	-	73493288	73498204	A5SS	ENSMUST00000200821.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029153.12	Ociad2	chr5	protein_coding	OCIA domain containing 2
novel_NIR_15272	chr5	73493288	73495351	-	73493288	73498204	A5SS	ENSMUST00000200821.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029153.12	Ociad2	chr5	protein_coding	OCIA domain containing 2
novel_NIR_15273	chr5	74453858	74558315	-	74556144	74558315	3pMXE	ENSMUST00000148994.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000062110.15	Scfd2	chr5	protein_coding	Sec1 family domain containing 2
novel_NIR_15274	chr5	74556104	74558315	-	74556144	74558315	A3SS	ENSMUST00000148994.3	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000062110.15	Scfd2	chr5	protein_coding	Sec1 family domain containing 2
novel_NIR_15275	chr5	74707486	74717707	+	74707486	74707768	A3SS&ES	ENSMUST00000113534.9	novel	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.15	2	11	2	11	y	0.57	4	3	4	3	y	0.33	1	2	1	2	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	ENSMUSG00000029227.16	Fip1l1	chr5	protein_coding	FIP1 like 1 (S. cerevisiae)
novel_NIR_15276	chr5	75322952	75324290	+	75322952	75324196	A3SS	ENSMUST00000202681.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.38	3	5	3	5	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029231.16	Pdgfra	chr5	protein_coding	platelet derived growth factor receptor, alpha polypeptide
novel_NIR_15277	chr5	76288395	76297050	+	76288395	76288627	3pMXE	ENSMUST00000149222.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029233.16	Srd5a3	chr5	protein_coding	steroid 5 alpha-reductase 3
novel_NIR_15278	chr5	76288395	76297050	+	76295955	76297050	5pMXE	ENSMUST00000113506.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029233.16	Srd5a3	chr5	protein_coding	steroid 5 alpha-reductase 3
novel_NIR_15279	chr5	76348408	76374780	-	76364725	76374780	3pMXE	ENSMUST00000202651.4	novel	0.10	2	18	2	18	n	0.00	0	6	0	6	n	0.00	0	46	0	46	n	0.00	0	15	0	15	n	0.12	5	37	5	37	n	0.07	2	28	2	28	n	0.14	3	19	3	19	n	0.15	4	22	4	22	y	0.08	1	11	1	11	n	0.00	0	21	0	21	n	0.22	4	14	4	14	y	0.00	0	18	0	18	n	ENSMUSG00000029238.12	Clock	chr5	protein_coding	circadian locomotor output cycles kaput
novel_NIR_15280	chr5	76352663	76356357	+	76352663	76353816	3pMXE	ENSMUST00000153633.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029234.14	Tmem165	chr5	protein_coding	transmembrane protein 165
novel_NIR_15281	chr5	76381445	76383613	-	76379395	76383613	A3SS	ENSMUST00000202651.4	novel	0.00	0	11	0	11	n	0.18	2	9	2	9	y	0.00	0	28	0	28	n	0.00	0	16	0	16	n	0.00	0	39	0	39	n	0.00	0	17	0	17	n	0.00	0	34	0	34	n	0.00	0	27	0	27	n	0.00	0	22	0	22	n	0.00	0	26	0	26	n	0.00	0	12	0	12	n	0.00	0	22	0	22	n	ENSMUSG00000029238.12	Clock	chr5	protein_coding	circadian locomotor output cycles kaput
novel_NIR_15282	chr5	76414736	76451271	-	76421890	76451271	3pMXE	ENSMUST00000201052.2	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	20	0	20	n	0.00	0	12	0	12	n	0.07	1	14	1	14	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.17	2	10	2	10	y	0.17	1	5	1	5	n	0.00	0	13	0	13	n	0.11	1	8	1	8	n	0.00	0	10	0	10	n	ENSMUSG00000029238.12	Clock	chr5	protein_coding	circadian locomotor output cycles kaput
novel_NIR_15283	chr5	76693210	76697373	+	76693210	76697299	A3SS	ENSMUST00000087133.11	novel	0.00	0	13	0	13	n	0.00	0	2	0	2	n	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.00	0	21	0	21	n	0.00	0	5	0	5	n	0.00	0	17	0	17	n	0.14	1	6	1	6	n	0.00	0	9	0	9	n	0.00	0	23	0	23	n	0.15	2	11	2	11	y	0.00	0	11	0	11	n	ENSMUSG00000036435.14	Exoc1	chr5	protein_coding	exocyst complex component 1
novel_NIR_15284	chr5	76751199	76754573	+	76751199	76754569	A3SS	ENSMUST00000130651.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.50	3	3	3	3	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	ENSMUSG00000036403.16	Cep135	chr5	protein_coding	centrosomal protein 135
novel_NIR_15285	chr5	76757616	76758912	+	76757616	76759497	A3SS	ENSMUST00000130651.2	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.29	2	5	2	5	y	0.00	0	8	0	8	n	0.33	1	2	1	2	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	ENSMUSG00000036403.16	Cep135	chr5	protein_coding	centrosomal protein 135
novel_NIR_15286	chr5	76786356	76786769	+	76786113	76786769	A5SS	ENSMUST00000121979.8	novel	0.18	2	9	2	9	y	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	17	0	17	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	ENSMUSG00000036403.16	Cep135	chr5	protein_coding	centrosomal protein 135
novel_NIR_15287	chr5	77025505	77025674	-	77025505	77026251	A5SS	ENSMUST00000123682.8	novel	0.22	2	7	2	7	n	0.36	5	9	5	9	n	0.33	2	4	2	4	y	0.29	4	10	4	10	y	0.59	10	7	10	7	n	0.20	1	4	1	4	n	0.11	2	17	2	17	n	0.43	3	4	3	4	y	0.00	0	7	0	7	n	0.33	4	8	4	8	n	0.25	5	15	5	15	n	0.33	3	6	3	6	n	ENSMUSG00000055923.17	Aasdh	chr5	protein_coding	aminoadipate-semialdehyde dehydrogenase
novel_NIR_15288	chr5	77025505;77025835	77025674;77026251	-	77025505	77026251	cassetteExon	ENSMUST00000123682.8	novel	0.22	2.0	7	2;2	7	y	0.25	3.0	9	5;1	9	n	0.20	1.0	4	2;0	4	n	0.17	2.0	10	4;0	10	n	0.46	6.0	7	10;2	7	y	0.11	0.5	4	1;0	4	n	0.17	3.5	17	2;5	17	y	0.27	1.5	4	3;0	4	n	0.12	1.0	7	0;2	7	n	0.27	3.0	8	4;2	8	y	0.17	3.0	15	5;1	15	n	0.43	4.5	6	3;6	6	y	ENSMUSG00000055923.17	Aasdh	chr5	protein_coding	aminoadipate-semialdehyde dehydrogenase
novel_NIR_15289	chr5	77025835	77026251	-	77024269	77026251	A3SS	ENSMUST00000149602.2	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	6	0	6	0	y	ENSMUSG00000055923.17	Aasdh	chr5	protein_coding	aminoadipate-semialdehyde dehydrogenase
novel_NIR_15290	chr5	77025835	77026251	-	77025505	77026251	A3SS	ENSMUST00000123682.8	novel	0.22	2	7	2	7	n	0.10	1	9	1	9	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.22	2	7	2	7	n	0.00	0	4	0	4	n	0.23	5	17	5	17	n	0.00	0	4	0	4	n	0.22	2	7	2	7	y	0.20	2	8	2	8	n	0.06	1	15	1	15	n	0.50	6	6	6	6	n	ENSMUSG00000055923.17	Aasdh	chr5	protein_coding	aminoadipate-semialdehyde dehydrogenase
novel_NIR_15291	chr5	77032048	77032159	-	77032048	77033894	A5SS	ENSMUST00000135697.8	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	0.83	5	1	5	1	y	0.67	4	2	4	2	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	0.92	11	1	11	1	y	0.83	5	1	5	1	y	0.57	4	3	4	3	y	-	-	-	-	-	-	0.60	3	2	3	2	y	ENSMUSG00000055923.17	Aasdh	chr5	protein_coding	aminoadipate-semialdehyde dehydrogenase
novel_NIR_15292	chr5	77032048	77032159	-	77032048	77033977	A5SS	ENSMUST00000123682.8	novel	0.25	1	3	1	3	n	0.67	2	1	2	1	y	0.40	2	3	2	3	y	0.71	5	2	5	2	y	0.67	4	2	4	2	y	0.25	1	3	1	3	n	0.31	4	9	4	9	y	0.61	11	7	11	7	y	0.71	5	2	5	2	y	0.40	4	6	4	6	n	0.00	0	4	0	4	n	0.33	3	6	3	6	y	ENSMUSG00000055923.17	Aasdh	chr5	protein_coding	aminoadipate-semialdehyde dehydrogenase
novel_NIR_15293	chr5	77032048;77032283	77032159;77033977	-	77032048	77033977	cassetteExon	ENSMUST00000123682.8	novel	0.14	0.5	3	1;0	3	n	0.50	1.0	1	2;0	1	n	0.25	1.0	3	2;0	3	n	0.56	2.5	2	5;0	2	n	0.50	2.0	2	4;0	2	n	0.14	0.5	3	1;0	3	n	0.18	2.0	9	4;0	9	n	0.44	5.5	7	11;0	7	n	0.56	2.5	2	5;0	2	n	0.33	3.0	6	4;2	6	y	0.00	0.0	4	0;0	4	n	0.20	1.5	6	3;0	6	n	ENSMUSG00000055923.17	Aasdh	chr5	protein_coding	aminoadipate-semialdehyde dehydrogenase
novel_NIR_15294	chr5	77034698	77035035	-	77034169	77035035	A3SS	ENSMUST00000123682.8	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.18	3	14	3	14	y	ENSMUSG00000055923.17	Aasdh	chr5	protein_coding	aminoadipate-semialdehyde dehydrogenase
novel_NIR_15295	chr5	77035983	77036499	-	77035983	77036440	A5SS	ENSMUST00000123682.8	novel	0.22	2	7	2	7	y	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.22	2	7	2	7	y	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.20	2	8	2	8	y	0.00	0	7	0	7	n	ENSMUSG00000055923.17	Aasdh	chr5	protein_coding	aminoadipate-semialdehyde dehydrogenase
novel_NIR_15296	chr5	77036681	77042137	-	77036681;77039642	77039450;77042137	ES	ENSMUST00000123682.8	novel	0.00	0	6.0	0	12;0	n	0.00	0	2.5	0	5;0	n	0.00	0	4.5	0	9;0	n	0.00	0	8.5	0	17;0	n	0.19	2	8.5	2	15;2	y	0.00	0	2.0	0	3;1	n	0.00	0	8.5	0	16;1	n	0.00	0	1.5	0	3;0	n	0.00	0	7.0	0	12;2	n	0.00	0	4.5	0	8;1	n	0.00	0	6.5	0	9;4	n	0.00	0	7.0	0	12;2	n	ENSMUSG00000055923.17	Aasdh	chr5	protein_coding	aminoadipate-semialdehyde dehydrogenase
novel_NIR_15297	chr5	77042305	77044224	-	77039642	77044224	A3SS	ENSMUST00000120963.8	novel	0.20	2	8	2	8	y	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.10	1	9	1	9	n	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	ENSMUSG00000055923.17	Aasdh	chr5	protein_coding	aminoadipate-semialdehyde dehydrogenase
novel_NIR_15298	chr5	77042305	77044224	-	77042209	77044224	A3SS	ENSMUST00000123682.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000055923.17	Aasdh	chr5	protein_coding	aminoadipate-semialdehyde dehydrogenase
novel_NIR_15299	chr5	77099252	77099616	+	77099248	77099616	A5SS	ENSMUST00000117536.8	novel	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.10	1	9	1	9	n	0.00	0	9	0	9	n	0.18	2	9	2	9	y	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.33	1	2	1	2	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	ENSMUSG00000029247.18	Paics	chr5	protein_coding	phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase
novel_NIR_15300	chr5	77099252	77099616	+	77099349	77099616	A5SS	ENSMUST00000141687.2	novel	-	-	-	-	-	-	0.33	1	2	1	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.25	2	6	2	6	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000029247.18	Paics	chr5	protein_coding	phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase
novel_NIR_15301	chr5	77099252	77099616	+	77099515	77099616	A5SS	ENSMUST00000120912.8	novel	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.05	1	21	1	21	n	0.00	0	8	0	8	n	0.17	2	10	2	10	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.10	1	9	1	9	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000029247.18	Paics	chr5	protein_coding	phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase
novel_NIR_15302	chr5	77099278	77099616	+	77099248	77099616	A5SS	ENSMUST00000117536.8	novel	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.25	3	9	3	9	y	0.00	0	9	0	9	n	0.20	1	4	1	4	n	0.12	1	7	1	7	n	0.33	1	2	1	2	n	0.22	2	7	2	7	y	0.20	2	8	2	8	y	0.00	0	2	0	2	n	0.22	2	7	2	7	y	ENSMUSG00000029247.18	Paics	chr5	protein_coding	phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase
novel_NIR_15303	chr5	77099278	77099616	+	77099349	77099616	A5SS	ENSMUST00000141687.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	3	0	3	0	y	0.00	0	6	0	6	n	0.50	1	1	1	1	n	0.50	1	1	1	1	n	0.50	1	1	1	1	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.50	2	2	2	2	y	ENSMUSG00000029247.18	Paics	chr5	protein_coding	phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase
novel_NIR_15304	chr5	77099278	77099616	+	77099515	77099616	A5SS	ENSMUST00000120912.8	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	21	0	21	n	0.27	3	8	3	8	y	0.00	0	10	0	10	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.10	1	9	1	9	n	0.40	2	3	2	3	y	0.22	2	7	2	7	y	0.00	0	3	0	3	n	0.33	2	4	2	4	y	ENSMUSG00000029247.18	Paics	chr5	protein_coding	phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase
novel_NIR_15305	chr5	77146280	77154319	+	77151946	77154319	5pMXE	ENSMUST00000071199.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000063820.12	Arl9	chr5	protein_coding	ADP-ribosylation factor-like 9
novel_NIR_15306	chr5	77242869	77243003	-	77242869	77262694	A5SS	ENSMUST00000081964.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	1.00	3	0	3	0	y	0.67	2	1	2	1	y	0.50	1	1	1	1	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000059325.15	Hopx	chr5	protein_coding	HOP homeobox
novel_NIR_15307	chr5	77242869	77248289	-	77242869	77262694	A5SS	ENSMUST00000081964.7	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	5	0	5	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	2	0	2	0	y	ENSMUSG00000059325.15	Hopx	chr5	protein_coding	HOP homeobox
novel_NIR_15308	chr5	77242869	77250778	-	77242869	77262694	A5SS	ENSMUST00000081964.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	ENSMUSG00000059325.15	Hopx	chr5	protein_coding	HOP homeobox
novel_NIR_15309	chr5	77248664	77249942	+	77243830	77249942	A5SS	ENSMUST00000148568.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000087541.2	Hopxos	chr5	lncRNA	HOP homeobox, opposite strand
novel_NIR_15310	chr5	77286430	77288077	-	77286430	77287562	A5SS	ENSMUST00000201649.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000106783.2	Chaer1	chr5	lncRNA	cardiac hypertrophy associated epigenetic regulator 1
novel_NIR_15311	chr5	77445050	77452033	-	77451672	77452033	3pMXE	ENSMUST00000150451.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	ENSMUSG00000036285.11	Noa1	chr5	protein_coding	nitric oxide associated 1
novel_NIR_15312	chr5	77503518	77555412	-	77503518	77549334	A5SS&ES	ENSMUST00000163898.6	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	5	0	5	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000036256.14	Igfbp7	chr5	protein_coding	insulin-like growth factor binding protein 7
novel_NIR_15313	chr5	7995275	8009025	-	7848362	8009025	A3SS	ENSMUST00000198825.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000105068.2	Gm30835	chr5	lncRNA	predicted gene, 30835
novel_NIR_15314	chr5	8106889	8107538	+	8096215	8107538	A5SS	ENSMUST00000088786.11	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	6	0	6	0	y	1.00	6	0	6	0	y	ENSMUSG00000003161.16	Sri	chr5	protein_coding	sorcin
novel_NIR_15315	chr5	8449812	8453612	-	8449812	8453080	5pMXE	ENSMUST00000163141.3	novel	0.00	0	3	0	3	n	0.22	2	7	2	7	y	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	ENSMUSG00000002297.17	Dbf4	chr5	protein_coding	DBF4 zinc finger
novel_NIR_15316	chr5	8449812	8453612	-	8449812;8453191	8453080;8453612	ES	ENSMUST00000002368.16	novel	0.00	0	3.5	0	3;4	n	0.24	2	6.5	2	7;6	y	0.00	0	14.0	0	12;16	n	0.00	0	3.5	0	4;3	n	0.00	0	6.0	0	8;4	n	0.00	0	3.0	0	0;6	n	0.00	0	5.5	0	8;3	n	0.00	0	6.5	0	4;9	n	0.00	0	4.5	0	4;5	n	0.00	0	7.5	0	6;9	n	0.00	0	5.5	0	4;7	n	0.00	0	8.0	0	7;9	n	ENSMUSG00000002297.17	Dbf4	chr5	protein_coding	DBF4 zinc finger
novel_NIR_15317	chr5	8449812	8453612	-	8453191	8453612	A3SS&ES	ENSMUST00000168500.8	novel	0.00	0	4	0	4	n	0.25	2	6	2	6	y	0.00	0	16	0	16	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	ENSMUSG00000002297.17	Dbf4	chr5	protein_coding	DBF4 zinc finger
novel_NIR_15318	chr5	8493785	8495242	+	8493785	8497298	A3SS	ENSMUST00000066921.10	novel	0.00	0	6	0	6	n	0.33	2	4	2	4	y	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	ENSMUSG00000054099.12	Slc25a40	chr5	protein_coding	solute carrier family 25, member 40
novel_NIR_15319	chr5	86206105	86208384	-	86206105	86209863	A5SS	ENSMUST00000031170.10	novel	0.17	1	5	1	5	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.67	4	2	4	2	y	0.11	1	8	1	8	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000029253.13	Cenpc1	chr5	protein_coding	centromere protein C1
novel_NIR_15320	chr5	86208755	86209863	-	86206105	86209863	A3SS	ENSMUST00000031170.10	novel	0.17	1	5	1	5	n	0.00	0	7	0	7	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.62	5	3	5	3	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.75	6	2	6	2	y	0.00	0	2	0	2	n	0.20	1	4	1	4	n	ENSMUSG00000029253.13	Cenpc1	chr5	protein_coding	centromere protein C1
novel_NIR_15321	chr5	86952450	86957167	+	86952450	86957164	A3SS	ENSMUST00000156363.8	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.29	2	5	2	5	y	0.09	1	10	1	10	n	ENSMUSG00000035851.15	Ythdc1	chr5	protein_coding	YTH domain containing 1
novel_NIR_15322	chr5	86952450	86957167	+	86952450	86963488	A3SS	ENSMUST00000119339.8	novel	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	19	0	19	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.20	1	4	1	4	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.11	1	8	1	8	n	0.50	2	2	2	2	y	0.08	1	11	1	11	n	ENSMUSG00000035851.15	Ythdc1	chr5	protein_coding	YTH domain containing 1
novel_NIR_15323	chr5	86955041	86957164	+	86952450	86957164	A5SS	ENSMUST00000156363.8	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	ENSMUSG00000035851.15	Ythdc1	chr5	protein_coding	YTH domain containing 1
novel_NIR_15324	chr5	86975980	86976367	+	86975980	86978413	A3SS	ENSMUST00000119339.8	novel	0.00	0	19	0	19	n	0.00	0	27	0	27	n	0.00	0	32	0	32	n	0.00	0	28	0	28	n	0.00	0	33	0	33	n	0.00	0	14	0	14	n	0.00	0	54	0	54	n	0.04	1	23	1	23	n	0.18	3	14	3	14	y	0.06	2	31	2	31	n	0.00	0	23	0	23	n	0.05	2	36	2	36	n	ENSMUSG00000035851.15	Ythdc1	chr5	protein_coding	YTH domain containing 1
novel_NIR_15325	chr5	87239705	87240309	-	87239705	87240084	A5SS	ENSMUST00000132667.2	novel	0.14	2	12	2	12	n	0.00	0	7	0	7	n	0.50	1	1	1	1	n	0.00	0	10	0	10	n	0.09	1	10	1	10	n	0.00	0	1	0	1	n	0.20	2	8	2	8	y	0.00	0	4	0	4	n	0.11	1	8	1	8	n	0.32	6	13	6	13	y	0.30	6	14	6	14	y	0.24	4	13	4	13	y	ENSMUSG00000070704.11	Ugt2b36	chr5	protein_coding	UDP glucuronosyltransferase 2 family, polypeptide B36
novel_NIR_15326	chr5	87239705	87240317	-	87239705	87240084	A5SS	ENSMUST00000132667.2	novel	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.29	4	10	4	10	y	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.07	1	13	1	13	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	ENSMUSG00000070704.11	Ugt2b36	chr5	protein_coding	UDP glucuronosyltransferase 2 family, polypeptide B36
novel_NIR_15327	chr5	87682955	87683860	-	87682955	87683956	A5SS	ENSMUST00000117455.8	novel	0.43	3	4	3	4	y	0.00	0	1	0	1	n	0.67	8	4	8	4	y	0.78	7	2	7	2	y	0.16	3	16	3	16	y	0.50	3	3	3	3	y	0.60	12	8	12	8	y	0.64	9	5	9	5	y	0.71	10	4	10	4	y	0.21	3	11	3	11	y	0.86	6	1	6	1	y	0.38	3	5	3	5	y	ENSMUSG00000029269.12	Sult1b1	chr5	protein_coding	sulfotransferase family 1B, member 1
novel_NIR_15328	chr5	87682955	87683860	-	87682955	87685964	A5SS	ENSMUST00000031199.11	novel	0.11	3	25	3	25	n	0.00	0	23	0	23	n	0.50	8	8	8	8	y	0.16	7	37	7	37	y	0.07	3	39	3	39	n	0.23	3	10	3	10	y	0.18	12	53	12	53	y	0.31	9	20	9	20	n	0.19	10	44	10	44	y	0.05	3	61	3	61	n	0.11	6	51	6	51	n	0.07	3	38	3	38	n	ENSMUSG00000029269.12	Sult1b1	chr5	protein_coding	sulfotransferase family 1B, member 1
novel_NIR_15329	chr5	87682955	87683948	-	87682955	87683956	A5SS	ENSMUST00000117455.8	novel	0.33	2	4	2	4	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.00	0	16	0	16	n	0.00	0	3	0	3	n	0.20	2	8	2	8	y	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	ENSMUSG00000029269.12	Sult1b1	chr5	protein_coding	sulfotransferase family 1B, member 1
novel_NIR_15330	chr5	87682955	87684256	-	87682955	87683956	5pMXE	ENSMUST00000117455.8	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.50	2	2	2	2	y	0.00	0	16	0	16	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.00	0	11	0	11	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	ENSMUSG00000029269.12	Sult1b1	chr5	protein_coding	sulfotransferase family 1B, member 1
novel_NIR_15331	chr5	87727781	87727877	-	87727781	87729777	A5SS	ENSMUST00000031201.9	novel	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.04	1	27	1	27	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.07	1	13	1	13	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000029272.9	Sult1e1	chr5	protein_coding	sulfotransferase family 1E, member 1
novel_NIR_15332	chr5	88741593	88746295	+	88732176	88746295	A5SS	ENSMUST00000199312.5	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029291.12	Rufy3	chr5	protein_coding	RUN and FYVE domain containing 3
novel_NIR_15333	chr5	88786937	88789276	+	88786937	88788448	A3SS	ENSMUST00000196894.5	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	3	0	3	n	1.00	5	0	5	0	y	0.00	0	2	0	2	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.83	5	1	5	1	y	0.43	3	4	3	4	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	ENSMUSG00000029291.12	Rufy3	chr5	protein_coding	RUN and FYVE domain containing 3
novel_NIR_15334	chr5	88786937	88789280	+	88786937	88788448	A3SS	ENSMUST00000196894.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029291.12	Rufy3	chr5	protein_coding	RUN and FYVE domain containing 3
novel_NIR_15335	chr5	88786937	88790110	+	88786937	88788448	A3SS	ENSMUST00000196894.5	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.60	3	2	3	2	y	-	-	-	-	-	-	0.50	1	1	1	1	n	0.20	1	4	1	4	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000029291.12	Rufy3	chr5	protein_coding	RUN and FYVE domain containing 3
novel_NIR_15336	chr5	88786937	88790768	+	88786937	88788448	3pMXE	ENSMUST00000196894.5	novel	1.00	1	0	1	0	n	1.00	9	0	9	0	y	1.00	2	0	2	0	y	0.00	0	3	0	3	n	1.00	6	0	6	0	y	0.00	0	2	0	2	n	0.50	2	2	2	2	y	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.56	5	4	5	4	y	1.00	1	0	1	0	n	1.00	5	0	5	0	y	ENSMUSG00000029291.12	Rufy3	chr5	protein_coding	RUN and FYVE domain containing 3
novel_NIR_15337	chr5	88786937	88790768	+	88786937	88790788	A3SS	ENSMUST00000198965.5	novel	0.02	1	47	1	47	n	0.20	9	37	9	37	y	0.04	2	47	2	47	n	0.00	0	49	0	49	n	0.08	6	66	6	66	n	0.00	0	21	0	21	n	0.04	2	52	2	52	n	0.03	1	34	1	34	n	0.02	1	46	1	46	n	0.07	5	65	5	65	n	0.02	1	52	1	52	n	0.08	5	61	5	61	n	ENSMUSG00000029291.12	Rufy3	chr5	protein_coding	RUN and FYVE domain containing 3
novel_NIR_15338	chr5	8944359	8946573	+	8943907	8946573	A5SS	ENSMUST00000197458.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000042476.13	Abcb4	chr5	protein_coding	ATP-binding cassette, sub-family B (MDR/TAP), member 4
novel_NIR_15339	chr5	8949718	8957208	+	8949718;8956032	8955975;8957208	ES	ENSMUST00000003717.13	novel	0.15	10	56.5	10	52;61	y	0.22	12	41.5	12	42;41	y	0.13	20	136.5	20	127;146	n	0.14	25	156.0	25	158;154	n	0.05	8	160.5	8	157;164	n	0.03	2	73.5	2	74;73	n	0.07	11	143.5	11	143;144	n	0.15	11	63.5	11	62;65	y	0.14	13	77.5	13	79;76	n	0.15	30	168.0	30	174;162	y	0.20	21	84.5	21	79;90	y	0.09	11	110.5	11	116;105	n	ENSMUSG00000042476.13	Abcb4	chr5	protein_coding	ATP-binding cassette, sub-family B (MDR/TAP), member 4
novel_NIR_15340	chr5	89568712	89569917	-	89569787	89569917	3pMXE	ENSMUST00000200534.2	novel	0.05	3	62	3	62	n	0.13	9	60	9	60	n	0.26	10	29	10	29	y	0.13	7	46	7	46	n	0.15	13	76	13	76	y	0.10	3	27	3	27	n	0.09	9	86	9	86	n	0.11	5	42	5	42	n	0.11	6	47	6	47	n	0.16	16	85	16	85	y	0.16	10	52	10	52	y	0.17	13	62	13	62	y	ENSMUSG00000035540.13	Gc	chr5	protein_coding	vitamin D binding protein
novel_NIR_15341	chr5	89569202	89569917	-	89569787	89569917	3pMXE	ENSMUST00000200534.2	novel	0.00	0	62	0	62	n	0.00	0	60	0	60	n	0.28	11	29	11	29	y	0.00	0	46	0	46	n	0.32	36	76	36	76	y	0.00	0	27	0	27	n	0.23	26	86	26	86	y	0.25	14	42	14	42	y	0.18	10	47	10	47	y	0.00	0	85	0	85	n	0.00	0	52	0	52	n	0.00	0	62	0	62	n	ENSMUSG00000035540.13	Gc	chr5	protein_coding	vitamin D binding protein
novel_NIR_15342	chr5	89569564	89569917	-	89569787	89569917	3pMXE	ENSMUST00000200534.2	novel	0.21	16	62	16	62	y	0.00	0	60	0	60	n	0.00	0	29	0	29	n	0.00	0	46	0	46	n	0.00	0	76	0	76	n	0.27	10	27	10	27	y	0.23	26	86	26	86	y	0.32	20	42	20	42	y	0.16	9	47	9	47	y	0.10	9	85	9	85	n	0.16	10	52	10	52	y	0.06	4	62	4	62	n	ENSMUSG00000035540.13	Gc	chr5	protein_coding	vitamin D binding protein
novel_NIR_15343	chr5	9028291	9031809	-	9028291	9031767	A5SS	ENSMUST00000146115.2	novel	0.71	22	9	22	9	y	0.79	22	6	22	6	y	0.64	45	25	45	25	y	0.58	21	15	21	15	y	0.69	60	27	60	27	y	0.46	13	15	13	15	y	0.79	42	11	42	11	y	0.82	31	7	31	7	y	0.68	17	8	17	8	y	0.62	28	17	28	17	y	0.62	13	8	13	8	y	0.77	24	7	24	7	y	ENSMUSG00000003623.5	Crot	chr5	protein_coding	carnitine O-octanoyltransferase
novel_NIR_15344	chr5	90426247	90432900	-	90426247;90431462	90430710;90432900	ES	ENSMUST00000168058.7	novel	0.00	0	5.5	0	5;6	n	0.33	1	2.0	1	1;3	n	0.38	5	8.0	5	5;11	y	0.60	3	2.0	3	1;3	y	0.00	0	9.5	0	6;13	n	0.00	0	1.0	0	0;2	n	0.40	4	6.0	4	2;10	y	0.18	1	4.5	1	0;9	n	0.33	2	4.0	2	2;6	y	0.00	0	9.5	0	4;15	n	0.00	0	2.0	0	1;3	n	0.44	2	2.5	2	2;3	y	ENSMUSG00000055204.16	Ankrd17	chr5	protein_coding	ankyrin repeat domain 17
novel_NIR_15345	chr5	90426247	90432900	-	90426250	90432900	A3SS	ENSMUST00000081914.13	novel	0.00	0	7	0	7	n	0.11	1	8	1	8	n	0.22	5	18	5	18	y	0.20	3	12	3	12	y	0.00	0	27	0	27	n	0.00	0	6	0	6	n	0.27	4	11	4	11	y	0.06	1	15	1	15	n	0.33	2	4	2	4	y	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.12	2	15	2	15	n	ENSMUSG00000055204.16	Ankrd17	chr5	protein_coding	ankyrin repeat domain 17
novel_NIR_15346	chr5	90426247	90432900	-	90431462	90432900	A3SS&ES	ENSMUST00000014421.15	novel	0.00	0	6	0	6	n	0.25	1	3	1	3	n	0.31	5	11	5	11	y	0.50	3	3	3	3	y	0.00	0	13	0	13	n	0.00	0	2	0	2	n	0.29	4	10	4	10	y	0.10	1	9	1	9	n	0.25	2	6	2	6	y	0.00	0	15	0	15	n	0.00	0	3	0	3	n	0.40	2	3	2	3	y	ENSMUSG00000055204.16	Ankrd17	chr5	protein_coding	ankyrin repeat domain 17
novel_NIR_15347	chr5	90451924	90513047	-	90451924	90487508	5pMXE	ENSMUST00000197021.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000055204.16	Ankrd17	chr5	protein_coding	ankyrin repeat domain 17
novel_NIR_15348	chr5	90451924	90513047	-	90451924	90513526	A5SS	ENSMUST00000014421.15	novel	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.20	2	8	2	8	y	0.00	0	17	0	17	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	ENSMUSG00000055204.16	Ankrd17	chr5	protein_coding	ankyrin repeat domain 17
novel_NIR_15349	chr5	9046547	9046806	-	9046547	9047104	A5SS	ENSMUST00000003720.5	novel	0.09	22	211	22	211	n	0.18	28	127	28	127	y	0.11	34	268	34	268	n	0.12	53	391	53	391	n	0.12	63	452	63	452	n	0.06	15	229	15	229	n	0.17	85	421	85	421	y	0.14	39	238	39	238	n	0.12	31	238	31	238	n	0.19	96	420	96	420	y	0.14	40	236	40	236	n	0.12	46	334	46	334	n	ENSMUSG00000003623.5	Crot	chr5	protein_coding	carnitine O-octanoyltransferase
novel_NIR_15350	chr5	9046547	9048402	-	9046547	9047104	5pMXE	ENSMUST00000003720.5	novel	0.16	41	211	41	211	y	0.16	25	127	25	127	y	0.59	382	268	382	268	y	0.13	58	391	58	391	n	0.18	101	452	101	452	y	0.29	92	229	92	229	y	0.27	152	421	152	421	y	0.28	91	238	91	238	y	0.09	24	238	24	238	n	0.15	77	420	77	420	y	0.11	29	236	29	236	n	0.17	69	334	69	334	y	ENSMUSG00000003623.5	Crot	chr5	protein_coding	carnitine O-octanoyltransferase
novel_NIR_15351	chr5	90608872	90610559	+	90610485	90610559	5pMXE	ENSMUST00000201737.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	8	0	8	0	y	ENSMUSG00000029368.11	Alb	chr5	protein_coding	albumin
novel_NIR_15352	chr5	90609633	90610559	+	90610485	90610559	5pMXE	ENSMUST00000201737.2	novel	-	-	-	-	-	-	0.67	4	2	4	2	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029368.11	Alb	chr5	protein_coding	albumin
novel_NIR_15353	chr5	90609636	90610559	+	90610485	90610559	5pMXE	ENSMUST00000201737.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	61	0	61	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	60	0	60	0	y	-	-	-	-	-	-	1.00	10	0	10	0	y	-	-	-	-	-	-	ENSMUSG00000029368.11	Alb	chr5	protein_coding	albumin
novel_NIR_15354	chr5	90610110	90610559	+	90610485	90610559	5pMXE	ENSMUST00000201737.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	ENSMUSG00000029368.11	Alb	chr5	protein_coding	albumin
novel_NIR_15355	chr5	90618697	90622426	+	90611945	90622426	A5SS	ENSMUST00000201356.2	novel	0.00	0	30	0	30	n	0.41	11	16	11	16	y	0.00	0	32	0	32	n	0.21	13	48	13	48	n	0.00	0	34	0	34	n	0.00	0	15	0	15	n	0.09	4	39	4	39	n	0.00	0	24	0	24	n	0.18	8	36	8	36	y	0.05	3	59	3	59	n	0.06	3	45	3	45	n	0.20	19	75	19	75	y	ENSMUSG00000029368.11	Alb	chr5	protein_coding	albumin
novel_NIR_15356	chr5	90620367	90622426	+	90611945	90622426	A5SS	ENSMUST00000201356.2	novel	0.00	0	30	0	30	n	0.00	0	16	0	16	n	0.00	0	32	0	32	n	0.00	0	48	0	48	n	0.48	31	34	31	34	y	0.00	0	15	0	15	n	0.00	0	39	0	39	n	0.00	0	24	0	24	n	0.00	0	36	0	36	n	0.00	0	59	0	59	n	0.00	0	45	0	45	n	0.00	0	75	0	75	n	ENSMUSG00000029368.11	Alb	chr5	protein_coding	albumin
novel_NIR_15357	chr5	90620541	90622426	+	90611945	90622426	A5SS	ENSMUST00000201356.2	novel	0.00	0	30	0	30	n	0.00	0	16	0	16	n	0.00	0	32	0	32	n	0.00	0	48	0	48	n	0.00	0	34	0	34	n	0.00	0	15	0	15	n	0.00	0	39	0	39	n	0.00	0	24	0	24	n	0.00	0	36	0	36	n	0.00	0	59	0	59	n	0.32	21	45	21	45	y	0.00	0	75	0	75	n	ENSMUSG00000029368.11	Alb	chr5	protein_coding	albumin
novel_NIR_15358	chr5	90647159	90648318	-	90647159	90663633	A5SS	ENSMUST00000202955.2	novel	1.00	9	0	9	0	y	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	11	0	11	0	y	1.00	18	0	18	0	y	1.00	15	0	15	0	y	1.00	7	0	7	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	11	0	11	0	y	0.85	11	2	11	2	y	1.00	6	0	6	0	y	ENSMUSG00000106788.2	Gm43449	chr5	lncRNA	predicted gene 43449
novel_NIR_15359	chr5	90647159	90652781	-	90647159	90663633	A5SS	ENSMUST00000202955.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000106788.2	Gm43449	chr5	lncRNA	predicted gene 43449
novel_NIR_15360	chr5	90647159	90661114	-	90647159	90663633	A5SS	ENSMUST00000202955.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.60	3	2	3	2	y	-	-	-	-	-	-	ENSMUSG00000106788.2	Gm43449	chr5	lncRNA	predicted gene 43449
novel_NIR_15361	chr5	90647159	90663460	-	90647159	90663633	A5SS	ENSMUST00000202955.2	novel	1.00	3	0	3	0	y	1.00	10	0	10	0	y	1.00	1	0	1	0	n	1.00	10	0	10	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	12	0	12	0	y	0.50	2	2	2	2	y	1.00	4	0	4	0	y	ENSMUSG00000106788.2	Gm43449	chr5	lncRNA	predicted gene 43449
novel_NIR_15362	chr5	90671801	90672705	+	90671801	90672649	A3SS	ENSMUST00000113179.9	novel	0.03	6	205	6	205	n	0.02	4	167	4	167	n	0.12	3	23	3	23	n	0.01	4	270	4	270	n	0.07	13	184	13	184	n	0.16	3	16	3	16	y	0.02	3	176	3	176	n	0.03	2	62	2	62	n	0.01	3	217	3	217	n	0.02	5	304	5	304	n	0.01	2	224	2	224	n	0.02	7	303	7	303	n	ENSMUSG00000029369.18	Afm	chr5	protein_coding	afamin
novel_NIR_15363	chr5	90709176	90711838	+	90709176	90711834	A3SS	ENSMUST00000094615.8	novel	0.19	7	29	7	29	y	0.11	3	25	3	25	n	0.06	3	46	3	46	n	0.09	5	48	5	48	n	0.02	1	62	1	62	n	0.04	1	22	1	22	n	0.03	1	36	1	36	n	0.09	3	29	3	29	n	0.05	2	36	2	36	n	0.04	3	70	3	70	n	0.03	1	35	1	35	n	0.05	4	70	4	70	n	ENSMUSG00000070690.8	Albfm1	chr5	protein_coding	albumin superfamily member 1
novel_NIR_15364	chr5	90730012	90732092	+	90729873	90732092	A5SS	ENSMUST00000094615.8	novel	0.21	15	55	15	55	y	0.31	19	43	19	43	y	0.09	5	50	5	50	n	0.26	20	56	20	56	y	0.11	7	57	7	57	n	0.05	2	39	2	39	n	0.26	13	37	13	37	y	0.00	0	28	0	28	n	0.32	24	51	24	51	y	0.28	38	96	38	96	y	0.34	24	46	24	46	y	0.42	53	74	53	74	y	ENSMUSG00000070690.8	Albfm1	chr5	protein_coding	albumin superfamily member 1
novel_NIR_15365	chr5	90763796	90779367	-	90770112	90779367	3pMXE	ENSMUST00000201370.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000029370.11	Rassf6	chr5	protein_coding	Ras association (RalGDS/AF-6) domain family member 6
novel_NIR_15366	chr5	90779465	90783931	-	90779465	90788246	A5SS	ENSMUST00000202784.4	novel	0.14	1	6	1	6	n	0.00	0	2	0	2	n	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.33	3	6	3	6	n	1.00	1	0	1	0	n	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.25	2	6	2	6	n	0.23	5	17	5	17	y	0.00	0	11	0	11	n	0.08	1	11	1	11	n	ENSMUSG00000029370.11	Rassf6	chr5	protein_coding	Ras association (RalGDS/AF-6) domain family member 6
novel_NIR_15367	chr5	90779465	90783931	-	90779465	90788441	A5SS	ENSMUST00000202704.4	novel	0.25	1	3	1	3	n	0.00	0	7	0	7	n	0.11	1	8	1	8	n	0.00	0	5	0	5	n	0.38	3	5	3	5	y	0.09	1	10	1	10	n	0.12	1	7	1	7	n	0.00	0	5	0	5	n	0.40	2	3	2	3	y	0.56	5	4	5	4	n	0.00	0	6	0	6	n	0.09	1	10	1	10	n	ENSMUSG00000029370.11	Rassf6	chr5	protein_coding	Ras association (RalGDS/AF-6) domain family member 6
novel_NIR_15368	chr5	90779465	90787432	-	90779465	90788246	A5SS	ENSMUST00000202784.4	novel	0.25	2	6	2	6	y	0.00	0	2	0	2	n	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.25	2	6	2	6	y	0.11	2	17	2	17	n	0.00	0	11	0	11	n	0.15	2	11	2	11	n	ENSMUSG00000029370.11	Rassf6	chr5	protein_coding	Ras association (RalGDS/AF-6) domain family member 6
novel_NIR_15369	chr5	90779465	90787432	-	90779465	90788441	A5SS	ENSMUST00000202704.4	novel	0.40	2	3	2	3	y	0.00	0	7	0	7	n	0.11	1	8	1	8	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.17	1	5	1	5	n	0.40	2	3	2	3	y	0.33	2	4	2	4	y	0.00	0	6	0	6	n	0.17	2	10	2	10	y	ENSMUSG00000029370.11	Rassf6	chr5	protein_coding	Ras association (RalGDS/AF-6) domain family member 6
novel_NIR_15370	chr5	90779465	90788429	-	90779465	90788246	5pMXE	ENSMUST00000202784.4	novel	0.33	3	6	3	6	y	0.00	0	2	0	2	n	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.00	0	6	0	6	n	0.00	0	17	0	17	n	0.00	0	11	0	11	n	0.08	1	11	1	11	n	ENSMUSG00000029370.11	Rassf6	chr5	protein_coding	Ras association (RalGDS/AF-6) domain family member 6
novel_NIR_15371	chr5	90779465	90788429	-	90779465	90788441	A5SS	ENSMUST00000202704.4	novel	0.50	3	3	3	3	y	0.00	0	7	0	7	n	0.11	1	8	1	8	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.09	1	10	1	10	n	ENSMUSG00000029370.11	Rassf6	chr5	protein_coding	Ras association (RalGDS/AF-6) domain family member 6
novel_NIR_15372	chr5	90779465;90783990	90783931;90788246	-	90779465	90788246	cassetteExon	ENSMUST00000202784.4	novel	0.08	0.5	6	1;0	6	n	0.00	0.0	2	0;0	2	n	0.14	1.0	6	1;1	6	n	0.08	0.5	6	0;1	6	n	0.25	2.0	6	3;1	6	n	1.00	0.5	0	1;0	0	n	0.11	0.5	4	1;0	4	n	0.00	0.0	4	0;0	4	n	0.33	3.0	6	2;4	6	y	0.13	2.5	17	5;0	17	n	0.00	0.0	11	0;0	11	n	0.08	1.0	11	1;1	11	n	ENSMUSG00000029370.11	Rassf6	chr5	protein_coding	Ras association (RalGDS/AF-6) domain family member 6
novel_NIR_15373	chr5	90779465;90783990	90783931;90788441	-	90779465	90788441	cassetteExon	ENSMUST00000202704.4	novel	0.14	0.5	3	1;0	3	n	0.00	0.0	7	0;0	7	n	0.11	1.0	8	1;1	8	n	0.09	0.5	5	0;1	5	n	0.23	1.5	5	3;0	5	n	0.05	0.5	10	1;0	10	n	0.07	0.5	7	1;0	7	n	0.00	0.0	5	0;0	5	n	0.25	1.0	3	2;0	3	n	0.50	4.0	4	5;3	4	y	0.00	0.0	6	0;0	6	n	0.05	0.5	10	1;0	10	n	ENSMUSG00000029370.11	Rassf6	chr5	protein_coding	Ras association (RalGDS/AF-6) domain family member 6
novel_NIR_15374	chr5	90779465;90787571	90787432;90788246	-	90779465	90788246	cassetteExon	ENSMUST00000202784.4	novel	0.14	1.0	6	2;0	6	n	0.00	0.0	2	0;0	2	n	0.08	0.5	6	1;0	6	n	0.00	0.0	6	0;0	6	n	0.00	0.0	6	0;0	6	n	-	-	-	-	-	-	0.20	1.0	4	0;2	4	n	0.20	1.0	4	1;1	4	n	0.14	1.0	6	2;0	6	n	0.06	1.0	17	2;0	17	n	0.00	0.0	11	0;0	11	n	0.15	2.0	11	2;2	11	y	ENSMUSG00000029370.11	Rassf6	chr5	protein_coding	Ras association (RalGDS/AF-6) domain family member 6
novel_NIR_15375	chr5	90787571	90788246	-	90779465	90788246	A3SS	ENSMUST00000202784.4	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.33	2	4	2	4	y	0.20	1	4	1	4	n	0.00	0	6	0	6	n	0.00	0	17	0	17	n	0.00	0	11	0	11	n	0.15	2	11	2	11	n	ENSMUSG00000029370.11	Rassf6	chr5	protein_coding	Ras association (RalGDS/AF-6) domain family member 6
novel_NIR_15376	chr5	9085184	9086144	+	9085184	9088349	A3SS	ENSMUST00000225021.2	novel	0.75	6	2	6	2	y	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.67	4	2	4	2	y	0.29	2	5	2	5	y	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.50	2	2	2	2	y	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.33	3	6	3	6	y	ENSMUSG00000114430.2	Gm40264	chr5	lncRNA	predicted gene, 40264
novel_NIR_15377	chr5	9085184	9086144	+	9085184	9090746	A3SS	ENSMUST00000224996.2	novel	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000114430.2	Gm40264	chr5	lncRNA	predicted gene, 40264
novel_NIR_15378	chr5	9085184	9088352	+	9085184	9088349	A3SS	ENSMUST00000225021.2	novel	0.33	1	2	1	2	n	0.67	4	2	4	2	y	0.00	0	2	0	2	n	0.60	3	2	3	2	y	0.29	2	5	2	5	y	0.20	1	4	1	4	n	0.60	6	4	6	4	y	0.00	0	2	0	2	n	0.67	4	2	4	2	y	0.29	2	5	2	5	y	0.57	4	3	4	3	y	0.54	7	6	7	6	y	ENSMUSG00000114430.2	Gm40264	chr5	lncRNA	predicted gene, 40264
novel_NIR_15379	chr5	9085184	9088352	+	9085184	9090746	A3SS	ENSMUST00000224996.2	novel	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	7	0	7	0	y	ENSMUSG00000114430.2	Gm40264	chr5	lncRNA	predicted gene, 40264
novel_NIR_15380	chr5	9085184	9138698	+	9085184	9088349	3pMXE	ENSMUST00000225021.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.25	2	6	2	6	y	ENSMUSG00000114430.2	Gm40264	chr5	lncRNA	predicted gene, 40264
novel_NIR_15381	chr5	9139083	9166480	+	9163410	9166480	5pMXE	ENSMUST00000198935.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000079659.6	Tmem243	chr5	protein_coding	transmembrane protein 243, mitochondrial
novel_NIR_15382	chr5	91406484	91406807	-	91406484	91412492	A5SS	ENSMUST00000200707.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	7	0	7	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000107198.2	Gm19619	chr5	lncRNA	predicted gene, 19619
novel_NIR_15383	chr5	91406484;91406965	91406807;91412492	-	91406484	91412492	cassetteExon	ENSMUST00000200707.2	novel	1.00	1.0	0	2;0	0	n	-	-	-	-	-	-	1.00	4.5	0	7;2	0	y	-	-	-	-	-	-	1.00	0.5	0	0;1	0	n	-	-	-	-	-	-	1.00	0.5	0	1;0	0	n	1.00	1.0	0	2;0	0	n	-	-	-	-	-	-	1.00	0.5	0	0;1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000107198.2	Gm19619	chr5	lncRNA	predicted gene, 19619
novel_NIR_15384	chr5	91429469	91430855	-	91429477	91430855	A3SS	ENSMUST00000200707.2	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	17	0	17	n	0.00	0	8	0	8	n	0.11	1	8	1	8	n	0.00	0	7	0	7	n	0.43	3	4	3	4	y	0.33	3	6	3	6	y	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000107198.2	Gm19619	chr5	lncRNA	predicted gene, 19619
novel_NIR_15385	chr5	9151395	9154570	+	9151395	9202967	A3SS	ENSMUST00000196029.5	novel	0.90	9	1	9	1	y	0.50	2	2	2	2	y	0.67	6	3	6	3	y	0.75	6	2	6	2	y	0.25	2	6	2	6	y	1.00	4	0	4	0	y	0.63	12	7	12	7	y	0.38	3	5	3	5	y	0.44	4	5	4	5	y	0.43	3	4	3	4	y	0.71	5	2	5	2	y	0.33	1	2	1	2	n	ENSMUSG00000079659.6	Tmem243	chr5	protein_coding	transmembrane protein 243, mitochondrial
novel_NIR_15386	chr5	9151395	9159604	+	9151395	9202967	A3SS	ENSMUST00000196029.5	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.14	1	6	1	6	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.29	2	5	2	5	y	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	ENSMUSG00000079659.6	Tmem243	chr5	protein_coding	transmembrane protein 243, mitochondrial
novel_NIR_15387	chr5	9159747	9166480	+	9163410	9166480	5pMXE	ENSMUST00000198935.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000079659.6	Tmem243	chr5	protein_coding	transmembrane protein 243, mitochondrial
novel_NIR_15388	chr5	9167563	9202967	+	9151395	9202967	A5SS	ENSMUST00000196029.5	novel	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.00	0	6	0	6	n	-	-	-	-	-	-	0.12	1	7	1	7	n	0.00	0	5	0	5	n	0.29	2	5	2	5	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.60	3	2	3	2	y	ENSMUSG00000079659.6	Tmem243	chr5	protein_coding	transmembrane protein 243, mitochondrial
novel_NIR_15389	chr5	9202993	9211614	-	9200492	9211614	A3SS	ENSMUST00000184372.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000042508.17	Dmtf1	chr5	protein_coding	cyclin D binding myb-like transcription factor 1
novel_NIR_15390	chr5	9204443	9205306	+	9204443	9207388	A3SS	ENSMUST00000196029.5	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.67	4	2	4	2	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.40	2	3	2	3	y	0.00	0	5	0	5	n	ENSMUSG00000079659.6	Tmem243	chr5	protein_coding	transmembrane protein 243, mitochondrial
novel_NIR_15391	chr5	9204443	9236250	+	9204443	9207388	3pMXE	ENSMUST00000196029.5	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.29	2	5	2	5	y	ENSMUSG00000079659.6	Tmem243	chr5	protein_coding	transmembrane protein 243, mitochondrial
novel_NIR_15392	chr5	92156114	92156824	-	92155993	92156824	A3SS	ENSMUST00000086978.12	novel	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	19	0	19	n	0.00	0	5	0	5	n	0.00	0	18	0	18	n	0.18	2	9	2	9	y	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	ENSMUSG00000029403.15	Cdkl2	chr5	protein_coding	cyclin-dependent kinase-like 2 (CDC2-related kinase)
novel_NIR_15393	chr5	92221137	92285411	-	92221137	92230609	5pMXE	ENSMUST00000164378.8	novel	1.00	4	0	4	0	y	0.50	1	1	1	1	n	1.00	14	0	14	0	y	1.00	3	0	3	0	y	0.83	10	2	10	2	y	0.67	2	1	2	1	y	0.83	5	1	5	1	y	0.25	1	3	1	3	n	0.67	2	1	2	1	y	0.80	8	2	8	2	y	1.00	2	0	2	0	y	0.67	2	1	2	1	y	ENSMUSG00000029405.17	G3bp2	chr5	protein_coding	GTPase activating protein (SH3 domain) binding protein 2
novel_NIR_15394	chr5	92221137	92285411	-	92221137	92231194	5pMXE	ENSMUST00000167918.8	novel	0.57	4	3	4	3	y	0.25	1	3	1	3	n	0.50	14	14	14	14	y	0.43	3	4	3	4	y	0.67	10	5	10	5	y	0.67	2	1	2	1	y	0.62	5	3	5	3	y	0.10	1	9	1	9	n	0.40	2	3	2	3	y	0.80	8	2	8	2	y	0.67	2	1	2	1	y	0.67	2	1	2	1	y	ENSMUSG00000029405.17	G3bp2	chr5	protein_coding	GTPase activating protein (SH3 domain) binding protein 2
novel_NIR_15395	chr5	92342034	92346195	+	92342034	92347676	A3SS	ENSMUST00000202155.2	novel	-	-	-	-	-	-	0.75	3	1	3	1	y	1.00	4	0	4	0	y	0.00	0	2	0	2	n	0.89	8	1	8	1	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	3	0	3	n	0.67	4	2	4	2	y	1.00	1	0	1	0	n	0.50	2	2	2	2	y	ENSMUSG00000029407.11	Uso1	chr5	protein_coding	USO1 vesicle docking factor
novel_NIR_15396	chr5	92342034;92343293	92343173;92347676	+	92342034	92347676	cassetteExon	ENSMUST00000202155.2	novel	1.00	0.5	0	0;1	0	n	0.00	0.0	1	0;0	1	n	1.00	8.5	0	1;16	0	n	0.20	0.5	2	1;0	2	n	0.80	4.0	1	0;8	1	n	1.00	0.5	0	0;1	0	n	1.00	5.0	0	2;8	0	y	1.00	1.0	0	0;2	0	n	0.00	0.0	3	0;0	3	n	0.67	4.0	2	0;8	2	n	1.00	6.0	0	0;12	0	n	0.60	3.0	2	0;6	2	n	ENSMUSG00000029407.11	Uso1	chr5	protein_coding	USO1 vesicle docking factor
novel_NIR_15397	chr5	92343293	92347676	+	92342034	92347676	A5SS	ENSMUST00000202155.2	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	16	0	16	0	n	0.00	0	2	0	2	n	0.89	8	1	8	1	y	1.00	1	0	1	0	n	1.00	8	0	8	0	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.80	8	2	8	2	y	1.00	12	0	12	0	y	0.75	6	2	6	2	y	ENSMUSG00000029407.11	Uso1	chr5	protein_coding	USO1 vesicle docking factor
novel_NIR_15398	chr5	92420429	92421511	-	92420429	92424778	A5SS	ENSMUST00000113102.10	novel	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.15	2	11	2	11	y	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	ENSMUSG00000029413.15	Naaa	chr5	protein_coding	N-acylethanolamine acid amidase
novel_NIR_15399	chr5	92444724	92444979	-	92443927	92444979	A3SS	ENSMUST00000031364.5	novel	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	29	0	29	n	0.00	0	9	0	9	n	0.19	3	13	3	13	y	0.00	0	20	0	20	n	0.00	0	15	0	15	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.00	0	18	0	18	n	0.00	0	9	0	9	n	0.00	0	17	0	17	n	ENSMUSG00000029415.5	Sdad1	chr5	protein_coding	SDA1 domain containing 1
novel_NIR_15400	chr5	92559054	92560028	+	92559054	92560024	A3SS	ENSMUST00000118106.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.23	3	10	3	10	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034842.17	Art3	chr5	protein_coding	ADP-ribosyltransferase 3
novel_NIR_15401	chr5	92559054	92560028	+	92559054	92562101	A3SS	ENSMUST00000113083.9	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.18	3	14	3	14	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000034842.17	Art3	chr5	protein_coding	ADP-ribosyltransferase 3
novel_NIR_15402	chr5	92572329	92575959	-	92572329;92573669	92573482;92575959	ES	ENSMUST00000038514.15	novel	0.00	0	43.5	0	50;37	n	0.00	0	29.0	0	46;12	n	0.03	1	31.0	1	40;22	n	0.05	2	39.5	2	39;40	n	0.02	1	55.5	1	71;40	n	0.21	4	15.0	4	16;14	y	0.02	1	46.0	1	50;42	n	0.00	0	29.0	0	36;22	n	0.06	2	29.0	2	36;22	n	0.04	2	51.5	2	65;38	n	0.03	1	28.0	1	30;26	n	0.04	2	43.5	2	51;36	n	ENSMUSG00000034826.15	Nup54	chr5	protein_coding	nucleoporin 54
novel_NIR_15403	chr5	92572329	92575959	-	92573669	92575959	3pMXE	ENSMUST00000142525.8	novel	0.00	0	37	0	37	n	0.00	0	12	0	12	n	0.04	1	22	1	22	n	0.05	2	40	2	40	n	0.02	1	40	1	40	n	0.22	4	14	4	14	y	0.02	1	42	1	42	n	0.00	0	22	0	22	n	0.08	2	22	2	22	n	0.05	2	38	2	38	n	0.04	1	26	1	26	n	0.05	2	36	2	36	n	ENSMUSG00000034826.15	Nup54	chr5	protein_coding	nucleoporin 54
novel_NIR_15404	chr5	92719569	92726331	+	92719569	92735375	A3SS	ENSMUST00000175974.2	novel	0.75	3	1	3	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	1.00	3	0	3	0	y	1.00	3	0	3	0	y	ENSMUSG00000057068.16	Fam47e	chr5	protein_coding	family with sequence similarity 47, member E
novel_NIR_15405	chr5	92719569	92733115	+	92719569	92735375	A3SS	ENSMUST00000175974.2	novel	0.86	6	1	6	1	y	0.89	8	1	8	1	y	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	12	0	12	0	y	-	-	-	-	-	-	0.80	4	1	4	1	y	0.83	5	1	5	1	y	1.00	1	0	1	0	n	1.00	10	0	10	0	y	ENSMUSG00000057068.16	Fam47e	chr5	protein_coding	family with sequence similarity 47, member E
novel_NIR_15406	chr5	92719569	92733115	+	92719569;92722572	92722428;92733115	ES	ENSMUST00000082382.8	novel	0.06	6	90.0	6	169;11	n	0.09	8	84.5	8	144;25	n	0.00	0	13.5	0	24;3	n	0.04	5	111.5	5	192;31	n	0.03	2	67.0	2	113;21	n	0.00	0	16.0	0	29;3	n	0.15	12	69.0	12	122;16	y	0.00	0	20.5	0	36;5	n	0.07	4	50.0	4	84;16	n	0.05	5	98.0	5	175;21	n	0.01	1	79.0	1	129;29	n	0.12	10	70.5	10	119;22	n	ENSMUSG00000057068.16	Fam47e	chr5	protein_coding	family with sequence similarity 47, member E
novel_NIR_15407	chr5	92719569	92733115	+	92727543	92733115	A5SS&ES	ENSMUST00000146417.9	novel	0.10	6	56	6	56	n	0.11	8	62	8	62	n	0.00	0	11	0	11	n	0.06	5	77	5	77	n	0.06	2	31	2	31	n	0.00	0	6	0	6	n	0.21	12	46	12	46	y	0.00	0	21	0	21	n	0.12	4	28	4	28	n	0.07	5	65	5	65	n	0.02	1	52	1	52	n	0.21	10	37	10	37	y	ENSMUSG00000057068.16	Fam47e	chr5	protein_coding	family with sequence similarity 47, member E
novel_NIR_15408	chr5	92719569;92727543	92727463;92735375	+	92719569	92735375	cassetteExon	ENSMUST00000175974.2	novel	0.83	5.0	1	0;10	1	n	0.85	5.5	1	0;11	1	n	-	-	-	-	-	-	1.00	7.5	0	3;12	0	y	1.00	1.5	0	0;3	0	n	1.00	2.0	0	0;4	0	n	1.00	3.5	0	0;7	0	n	-	-	-	-	-	-	0.80	4.0	1	0;8	1	n	0.75	3.0	1	0;6	1	n	1.00	2.0	0	0;4	0	n	1.00	0.5	0	0;1	0	n	ENSMUSG00000057068.16	Fam47e	chr5	protein_coding	family with sequence similarity 47, member E
novel_NIR_15409	chr5	92719569;92727543	92727463;92738375	+	92719569;92735452	92735375;92738375	MXE	ENSMUST00000175974.2	novel	0.17	7.5	36.5	0;15	1;72	n	0.00	0.0	57.5	0;0	1;114	n	0.00	0.0	9.0	0;0	0;18	n	0.17	10.5	51.5	3;18	0;103	y	0.05	1.5	30.5	0;3	0;61	n	0.00	0.0	5.0	0;0	0;10	n	0.09	3.5	34.0	0;7	0;68	n	0.19	2.0	8.5	0;4	0;17	n	0.00	0.0	24.5	0;0	1;48	n	0.12	6.0	46.0	0;12	1;91	n	0.02	1.0	42.5	0;2	0;85	n	0.05	1.5	26.0	0;3	0;52	n	ENSMUSG00000057068.16	Fam47e	chr5	protein_coding	family with sequence similarity 47, member E
novel_NIR_15410	chr5	92719694	92722428	+	92713920	92722428	A5SS	ENSMUST00000146417.9	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000057068.16	Fam47e	chr5	protein_coding	family with sequence similarity 47, member E
novel_NIR_15411	chr5	92722572	92724077	+	92722572	92738375	A3SS	ENSMUST00000176621.8	novel	0.00	0	7	0	7	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.00	0	17	0	17	n	0.17	2	10	2	10	y	0.00	0	1	0	1	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.08	1	12	1	12	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	ENSMUSG00000057068.16	Fam47e	chr5	protein_coding	family with sequence similarity 47, member E
novel_NIR_15412	chr5	92722572	92735375	+	92719569	92735375	A5SS	ENSMUST00000175974.2	novel	0.67	2	1	2	1	y	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	n	1.00	1	0	1	0	n	0.86	6	1	6	1	y	0.83	5	1	5	1	y	1.00	8	0	8	0	y	1.00	2	0	2	0	y	ENSMUSG00000057068.16	Fam47e	chr5	protein_coding	family with sequence similarity 47, member E
novel_NIR_15413	chr5	92722572	92735375	+	92722572	92727463	A3SS&ES	ENSMUST00000149617.2	novel	0.08	2	23	2	23	n	0.05	2	35	2	35	n	0.00	0	4	0	4	n	0.07	2	27	2	27	n	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.20	6	24	6	24	y	0.12	1	7	1	7	n	0.30	6	14	6	14	y	0.12	5	36	5	36	n	0.29	8	20	8	20	y	0.10	2	18	2	18	n	ENSMUSG00000057068.16	Fam47e	chr5	protein_coding	family with sequence similarity 47, member E
novel_NIR_15414	chr5	92722572	92735375	+	92722572	92738375	A3SS	ENSMUST00000176621.8	novel	0.22	2	7	2	7	y	0.17	2	10	2	10	y	-	-	-	-	-	-	0.11	2	17	2	17	n	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.33	6	12	6	12	y	0.10	1	9	1	9	n	0.32	6	13	6	13	y	0.29	5	12	5	12	y	0.44	8	10	8	10	y	0.15	2	11	2	11	y	ENSMUSG00000057068.16	Fam47e	chr5	protein_coding	family with sequence similarity 47, member E
novel_NIR_15415	chr5	92722572	92735375	+	92722572;92733270	92733115;92735375	ES	ENSMUST00000082382.8	novel	0.05	2	37.5	2	11;64	n	0.04	2	50.0	2	25;75	n	0.00	0	8.5	0	3;14	n	0.03	2	60.5	2	31;90	n	0.00	0	35.5	0	21;50	n	0.00	0	8.0	0	3;13	n	0.14	6	36.0	6	16;56	n	0.06	1	15.0	1	5;25	n	0.15	6	34.0	6	16;52	y	0.09	5	51.5	5	21;82	n	0.16	8	42.0	8	29;55	y	0.06	2	34.0	2	22;46	n	ENSMUSG00000057068.16	Fam47e	chr5	protein_coding	family with sequence similarity 47, member E
novel_NIR_15416	chr5	92722572	92752741	+	92722572	92738375	3pMXE	ENSMUST00000176621.8	novel	0.12	1	7	1	7	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.23	3	10	3	10	y	0.00	0	11	0	11	n	ENSMUSG00000057068.16	Fam47e	chr5	protein_coding	family with sequence similarity 47, member E
novel_NIR_15417	chr5	92723140	92735375	+	92719569	92735375	A5SS	ENSMUST00000175974.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000057068.16	Fam47e	chr5	protein_coding	family with sequence similarity 47, member E
novel_NIR_15418	chr5	92727543	92735375	+	92719569	92735375	A5SS	ENSMUST00000175974.2	novel	0.91	10	1	10	1	y	0.92	11	1	11	1	y	-	-	-	-	-	-	1.00	12	0	12	0	n	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	7	0	7	0	y	-	-	-	-	-	-	0.89	8	1	8	1	y	0.86	6	1	6	1	n	1.00	4	0	4	0	y	1.00	1	0	1	0	n	ENSMUSG00000057068.16	Fam47e	chr5	protein_coding	family with sequence similarity 47, member E
novel_NIR_15419	chr5	92727543	92735375	+	92727543	92733115	A3SS&ES	ENSMUST00000149617.2	novel	0.15	10	56	10	56	y	0.15	11	62	11	62	y	0.00	0	11	0	11	n	0.13	12	77	12	77	n	0.09	3	31	3	31	n	0.40	4	6	4	6	y	0.13	7	46	7	46	n	0.00	0	21	0	21	n	0.22	8	28	8	28	y	0.08	6	65	6	65	n	0.07	4	52	4	52	n	0.03	1	37	1	37	n	ENSMUSG00000057068.16	Fam47e	chr5	protein_coding	family with sequence similarity 47, member E
novel_NIR_15420	chr5	92727543	92735375	+	92727543;92733270	92733115;92735375	ES	ENSMUST00000146417.9	novel	0.14	10	60.0	10	56;64	n	0.14	11	68.5	11	62;75	n	0.00	0	12.5	0	11;14	n	0.13	12	83.5	12	77;90	n	0.07	3	40.5	3	31;50	n	0.30	4	9.5	4	6;13	y	0.12	7	51.0	7	46;56	n	0.00	0	23.0	0	21;25	n	0.17	8	40.0	8	28;52	y	0.08	6	73.5	6	65;82	n	0.07	4	53.5	4	52;55	n	0.02	1	41.5	1	37;46	n	ENSMUSG00000057068.16	Fam47e	chr5	protein_coding	family with sequence similarity 47, member E
novel_NIR_15421	chr5	92727543	92735375	+	92733270	92735375	A5SS&ES	ENSMUST00000082382.8	novel	0.14	10	64	10	64	n	0.13	11	75	11	75	n	0.00	0	14	0	14	n	0.12	12	90	12	90	n	0.06	3	50	3	50	n	0.24	4	13	4	13	y	0.11	7	56	7	56	n	0.00	0	25	0	25	n	0.13	8	52	8	52	n	0.07	6	82	6	82	n	0.07	4	55	4	55	n	0.02	1	46	1	46	n	ENSMUSG00000057068.16	Fam47e	chr5	protein_coding	family with sequence similarity 47, member E
novel_NIR_15422	chr5	92727543	92738375	+	92722572	92738375	A5SS	ENSMUST00000176621.8	novel	0.68	15	7	15	7	y	0.00	0	10	0	10	n	-	-	-	-	-	-	0.51	18	17	18	17	n	0.23	3	10	3	10	y	0.00	0	1	0	1	n	0.37	7	12	7	12	y	0.31	4	9	4	9	y	0.00	0	13	0	13	n	0.50	12	12	12	12	n	0.17	2	10	2	10	y	0.21	3	11	3	11	y	ENSMUSG00000057068.16	Fam47e	chr5	protein_coding	family with sequence similarity 47, member E
novel_NIR_15423	chr5	92727543	92738375	+	92727543	92733115	3pMXE	ENSMUST00000176448.8	novel	0.21	15	56	15	56	y	0.00	0	62	0	62	n	0.00	0	11	0	11	n	0.19	18	77	18	77	y	0.09	3	31	3	31	n	0.00	0	6	0	6	n	0.13	7	46	7	46	n	0.16	4	21	4	21	y	0.00	0	28	0	28	n	0.16	12	65	12	65	y	0.04	2	52	2	52	n	0.07	3	37	3	37	n	ENSMUSG00000057068.16	Fam47e	chr5	protein_coding	family with sequence similarity 47, member E
novel_NIR_15424	chr5	92727543	92738375	+	92727543;92733270	92733115;92738375	ES	ENSMUST00000149617.2	novel	0.30	15	35.5	15	56;15	y	0.00	0	35.0	0	62;8	n	0.00	0	5.5	0	11;0	n	0.30	18	43.0	18	77;9	y	0.14	3	18.5	3	31;6	n	0.00	0	3.0	0	6;0	n	0.22	7	25.5	7	46;5	y	0.26	4	11.5	4	21;2	y	0.00	0	14.5	0	28;1	n	0.24	12	37.0	12	65;9	y	0.07	2	28.0	2	52;4	n	0.12	3	21.0	3	37;5	n	ENSMUSG00000057068.16	Fam47e	chr5	protein_coding	family with sequence similarity 47, member E
novel_NIR_15425	chr5	92727543	92738375	+	92735452	92738375	A5SS&ES	ENSMUST00000175974.2	novel	0.17	15	72	15	72	y	0.00	0	114	0	114	n	0.00	0	18	0	18	n	0.15	18	103	18	103	n	0.05	3	61	3	61	n	0.00	0	10	0	10	n	0.09	7	68	7	68	n	0.19	4	17	4	17	y	0.00	0	48	0	48	n	0.12	12	91	12	91	n	0.02	2	85	2	85	n	0.05	3	52	3	52	n	ENSMUSG00000057068.16	Fam47e	chr5	protein_coding	family with sequence similarity 47, member E
novel_NIR_15426	chr5	92728798	92733115	+	92722572	92733115	A5SS	ENSMUST00000082382.8	novel	0.00	0	11	0	11	n	0.04	1	25	1	25	n	0.40	2	3	2	3	y	0.09	3	31	3	31	n	0.16	4	21	4	21	y	0.00	0	3	0	3	n	0.00	0	16	0	16	n	0.29	2	5	2	5	y	0.27	6	16	6	16	y	0.28	8	21	8	21	n	0.19	7	29	7	29	y	0.24	7	22	7	22	y	ENSMUSG00000057068.16	Fam47e	chr5	protein_coding	family with sequence similarity 47, member E
novel_NIR_15427	chr5	92728798	92738375	+	92722572	92738375	A5SS	ENSMUST00000176621.8	novel	0.00	0	7	0	7	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.20	3	12	3	12	y	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.08	1	12	1	12	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	ENSMUSG00000057068.16	Fam47e	chr5	protein_coding	family with sequence similarity 47, member E
novel_NIR_15428	chr5	92732864	92733115	+	92722572	92733115	A5SS	ENSMUST00000082382.8	novel	0.27	4	11	4	11	y	0.04	1	25	1	25	n	0.00	0	3	0	3	n	0.18	7	31	7	31	y	0.00	0	21	0	21	n	0.00	0	3	0	3	n	0.00	0	16	0	16	n	0.17	1	5	1	5	n	0.00	0	16	0	16	n	0.00	0	21	0	21	n	0.00	0	29	0	29	n	0.00	0	22	0	22	n	ENSMUSG00000057068.16	Fam47e	chr5	protein_coding	family with sequence similarity 47, member E
novel_NIR_15429	chr5	92752623	92752741	+	92752538	92752741	A5SS	ENSMUST00000202332.2	novel	0.00	0	7	0	7	n	0.67	2	1	2	1	y	0.20	1	4	1	4	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.92	11	1	11	1	y	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000047963.8	Stbd1	chr5	protein_coding	starch binding domain 1
novel_NIR_15430	chr5	92809468	92809909	-	92809468	92809784	A5SS	ENSMUST00000060930.10	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000050050.18	Ccdc158	chr5	protein_coding	coiled-coil domain containing 158
novel_NIR_15431	chr5	92928766	92946418	+	92928766	93067504	A3SS	ENSMUST00000113055.9	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.43	3	4	3	4	y	0.20	1	4	1	4	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.20	1	4	1	4	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	ENSMUSG00000029381.17	Shroom3	chr5	protein_coding	shroom family member 3
novel_NIR_15432	chr5	93090993	93096263	+	93090998	93096263	A5SS	ENSMUST00000113055.9	novel	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.20	2	8	2	8	y	0.00	0	8	0	8	n	0.00	0	2	0	2	n	ENSMUSG00000029381.17	Shroom3	chr5	protein_coding	shroom family member 3
novel_NIR_15433	chr5	93315546	93323263	+	93315546	93319198	3pMXE	ENSMUST00000074733.11	novel	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.12	3	23	3	23	n	0.00	0	3	0	3	n	0.05	1	19	1	19	n	0.06	1	16	1	16	n	0.30	3	7	3	7	y	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.33	3	6	3	6	y	0.00	0	8	0	8	n	ENSMUSG00000058013.12	Septin11	chr5	protein_coding	septin 11
novel_NIR_15434	chr5	93315546	93323263	+	93315546	93321329	A3SS&ES	ENSMUST00000202217.3	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000058013.12	Septin11	chr5	protein_coding	septin 11
novel_NIR_15435	chr5	93315546	93323263	+	93315546	93323899	A3SS	ENSMUST00000202308.4	novel	-	-	-	-	-	-	0.67	2	1	2	1	y	0.33	3	6	3	6	y	-	-	-	-	-	-	0.17	1	5	1	5	n	0.14	1	6	1	6	n	0.60	3	2	3	2	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.60	3	2	3	2	y	0.00	0	4	0	4	n	ENSMUSG00000058013.12	Septin11	chr5	protein_coding	septin 11
novel_NIR_15436	chr5	93315546	93323263	+	93315546;93321396	93321332;93323263	ES	ENSMUST00000201421.4	novel	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	1.00	3	0.0	3	0;0	y	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	0.67	1	0.5	1	0;1	n	0.43	3	4.0	3	4;4	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0.0	3	0;0	y	-	-	-	-	-	-	ENSMUSG00000058013.12	Septin11	chr5	protein_coding	septin 11
novel_NIR_15437	chr5	93351221	93353773	-	93353566	93353773	A3SS&ES	ENSMUST00000144514.3	novel	1.00	13	0	13	0	y	1.00	6	0	6	0	y	1.00	18	0	18	0	y	1.00	16	0	16	0	y	1.00	15	0	15	0	y	1.00	11	0	11	0	y	1.00	13	0	13	0	y	1.00	10	0	10	0	y	1.00	10	0	10	0	y	1.00	8	0	8	0	y	1.00	4	0	4	0	y	1.00	8	0	8	0	y	ENSMUSG00000063015.13	Ccni	chr5	protein_coding	cyclin I
novel_NIR_15438	chr5	96254164	96263641	-	96254164	96276802	A5SS	ENSMUST00000155901.8	novel	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	28	0	28	n	0.10	3	26	3	26	n	0.00	0	47	0	47	n	0.00	0	16	0	16	n	0.05	1	19	1	19	n	0.05	1	19	1	19	n	0.00	0	26	0	26	n	0.00	0	31	0	31	n	0.00	0	15	0	15	n	0.15	4	23	4	23	y	ENSMUSG00000034724.19	Cnot6l	chr5	protein_coding	CCR4-NOT transcription complex, subunit 6-like
novel_NIR_15439	chr5	96281991	96308988	-	96281991	96309221	A5SS	ENSMUST00000122003.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000034724.19	Cnot6l	chr5	protein_coding	CCR4-NOT transcription complex, subunit 6-like
novel_NIR_15440	chr5	96281991	96308988	-	96281991	96309478	A5SS	ENSMUST00000129646.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034724.19	Cnot6l	chr5	protein_coding	CCR4-NOT transcription complex, subunit 6-like
novel_NIR_15441	chr5	96281991	96308988	-	96281991	96309551	A5SS	ENSMUST00000036646.14	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034724.19	Cnot6l	chr5	protein_coding	CCR4-NOT transcription complex, subunit 6-like
novel_NIR_15442	chr5	96281991	96308988	-	96281991	96309709	A5SS	ENSMUST00000141383.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034724.19	Cnot6l	chr5	protein_coding	CCR4-NOT transcription complex, subunit 6-like
novel_NIR_15443	chr5	96281991	96308988	-	96281991	96309796	A5SS	ENSMUST00000155901.8	novel	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.22	2	7	2	7	y	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.10	1	9	1	9	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	ENSMUSG00000034724.19	Cnot6l	chr5	protein_coding	CCR4-NOT transcription complex, subunit 6-like
novel_NIR_15444	chr5	96281991	96308988	-	96281991	96311881	A5SS	ENSMUST00000137207.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034724.19	Cnot6l	chr5	protein_coding	CCR4-NOT transcription complex, subunit 6-like
novel_NIR_15445	chr5	96357424	96357976	+	96357424	96357940	A3SS	ENSMUST00000117766.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.20	1	4	1	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000029486.14	Mrpl1	chr5	protein_coding	mitochondrial ribosomal protein L1
novel_NIR_15446	chr6	100609253	100613956	-	100609253	100613929	A5SS	ENSMUST00000113312.9	novel	0.06	1	16	1	16	n	0.12	1	7	1	7	n	0.00	0	24	0	24	n	0.00	0	24	0	24	n	0.05	1	21	1	21	n	0.00	0	7	0	7	n	0.00	0	17	0	17	n	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.06	1	17	1	17	n	0.21	3	11	3	11	y	0.00	0	16	0	16	n	ENSMUSG00000035378.18	Shq1	chr6	protein_coding	SHQ1 homolog (S. cerevisiae)
novel_NIR_15447	chr6	101283956	101331355	-	101157087	101331355	A3SS	ENSMUST00000151175.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035357.18	Pdzrn3	chr6	protein_coding	PDZ domain containing RING finger 3
novel_NIR_15448	chr6	101508730	101514151	+	101502420	101514151	A5SS	ENSMUST00000205133.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000108274.2	Gm44169	chr6	lncRNA	predicted gene, 44169
novel_NIR_15449	chr6	106747876	106750246	+	106747876	106749980	3pMXE	ENSMUST00000154026.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000013736.17	Trnt1	chr6	protein_coding	tRNA nucleotidyl transferase, CCA-adding, 1
novel_NIR_15450	chr6	108121665	108150317	-	108121665	108152949	A5SS	ENSMUST00000172188.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000030101.16	Sumf1	chr6	protein_coding	sulfatase modifying factor 1
novel_NIR_15451	chr6	108254077	108316468	+	108218295	108316468	A5SS	ENSMUST00000032192.9	novel	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	23	0	23	n	0.00	0	14	0	14	n	0.33	2	4	2	4	y	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	19	0	19	n	0.00	0	2	0	2	n	0.00	0	13	0	13	n	ENSMUSG00000030102.12	Itpr1	chr6	protein_coding	inositol 1,4,5-trisphosphate receptor 1
novel_NIR_15452	chr6	108254077	108316468	+	108230044	108316468	A5SS	ENSMUST00000203995.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030102.12	Itpr1	chr6	protein_coding	inositol 1,4,5-trisphosphate receptor 1
novel_NIR_15453	chr6	108254221	108316468	+	108218295	108316468	A5SS	ENSMUST00000032192.9	novel	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.12	2	14	2	14	n	0.00	0	12	0	12	n	0.00	0	23	0	23	n	0.18	3	14	3	14	y	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	19	0	19	n	0.00	0	2	0	2	n	0.19	3	13	3	13	y	ENSMUSG00000030102.12	Itpr1	chr6	protein_coding	inositol 1,4,5-trisphosphate receptor 1
novel_NIR_15454	chr6	108254221	108316468	+	108230044	108316468	A5SS	ENSMUST00000203995.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000030102.12	Itpr1	chr6	protein_coding	inositol 1,4,5-trisphosphate receptor 1
novel_NIR_15455	chr6	108255485	108316468	+	108218295	108316468	A5SS	ENSMUST00000032192.9	novel	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.07	1	14	1	14	n	0.00	0	12	0	12	n	0.00	0	23	0	23	n	0.00	0	14	0	14	n	0.00	0	4	0	4	n	0.29	5	12	5	12	y	0.14	1	6	1	6	n	0.05	1	19	1	19	n	0.00	0	2	0	2	n	0.13	2	13	2	13	n	ENSMUSG00000030102.12	Itpr1	chr6	protein_coding	inositol 1,4,5-trisphosphate receptor 1
novel_NIR_15456	chr6	108255485	108316468	+	108230044	108316468	A5SS	ENSMUST00000203995.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000030102.12	Itpr1	chr6	protein_coding	inositol 1,4,5-trisphosphate receptor 1
novel_NIR_15457	chr6	108435912	108436019	+	108435912	108447984	A3SS	ENSMUST00000205048.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030102.12	Itpr1	chr6	protein_coding	inositol 1,4,5-trisphosphate receptor 1
novel_NIR_15458	chr6	108768943	108790588	+	108771893	108790588	5pMXE	ENSMUST00000204483.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000030105.9	Arl8b	chr6	protein_coding	ADP-ribosylation factor-like 8B
novel_NIR_15459	chr6	108789877	108790588	+	108771893	108790588	A5SS	ENSMUST00000204483.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030105.9	Arl8b	chr6	protein_coding	ADP-ribosylation factor-like 8B
novel_NIR_15460	chr6	108813517	108813701	+	108813429	108813701	A5SS	ENSMUST00000203469.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030104.10	Edem1	chr6	protein_coding	ER degradation enhancer, mannosidase alpha-like 1
novel_NIR_15461	chr6	108813598	108813701	+	108813429	108813701	A5SS	ENSMUST00000203469.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000030104.10	Edem1	chr6	protein_coding	ER degradation enhancer, mannosidase alpha-like 1
novel_NIR_15462	chr6	112700162	112706610	-	112700162;112704501	112704174;112706610	ES	ENSMUST00000088373.11	novel	-	-	-	-	-	-	0.00	0	1.5	0	3;0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.86	3	0.5	3	0;1	y	ENSMUSG00000030257.17	Srgap3	chr6	protein_coding	SLIT-ROBO Rho GTPase activating protein 3
novel_NIR_15463	chr6	113026377	113026811	+	113026377	113032600	A3SS	ENSMUST00000032398.15	novel	0.00	0	25	0	25	n	0.00	0	13	0	13	n	0.19	5	22	5	22	y	0.00	0	22	0	22	n	0.00	0	41	0	41	n	0.00	0	11	0	11	n	0.00	0	28	0	28	n	0.07	1	13	1	13	n	0.00	0	29	0	29	n	0.00	0	33	0	33	n	0.00	0	21	0	21	n	0.00	0	28	0	28	n	ENSMUSG00000030264.15	Thumpd3	chr6	protein_coding	THUMP domain containing 3
novel_NIR_15464	chr6	113026377	113032576	+	113026377	113027718	3pMXE	ENSMUST00000134657.3	novel	0.20	2	8	2	8	y	0.00	0	18	0	18	n	0.00	0	22	0	22	n	0.00	0	13	0	13	n	0.00	0	25	0	25	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	18	0	18	n	0.00	0	22	0	22	n	0.00	0	16	0	16	n	ENSMUSG00000030264.15	Thumpd3	chr6	protein_coding	THUMP domain containing 3
novel_NIR_15465	chr6	113026377	113032604	+	113026377	113032600	A3SS	ENSMUST00000032398.15	novel	0.00	0	25	0	25	n	0.19	3	13	3	13	y	0.00	0	22	0	22	n	0.00	0	22	0	22	n	0.00	0	41	0	41	n	0.00	0	11	0	11	n	0.00	0	28	0	28	n	0.00	0	13	0	13	n	0.00	0	29	0	29	n	0.00	0	33	0	33	n	0.00	0	21	0	21	n	0.00	0	28	0	28	n	ENSMUSG00000030264.15	Thumpd3	chr6	protein_coding	THUMP domain containing 3
novel_NIR_15466	chr6	113026377;113026878	113026811;113027718	+	113026377	113027718	cassetteExon	ENSMUST00000134657.3	novel	0.00	0.0	8	0;0	8	n	0.00	0.0	18	0;0	18	n	0.20	5.5	22	5;6	22	y	0.04	0.5	13	0;1	13	n	0.06	1.5	25	0;3	25	n	0.00	0.0	10	0;0	10	n	0.16	2.5	13	0;5	13	n	0.04	0.5	11	1;0	11	n	0.04	0.5	11	0;1	11	n	0.14	3.0	18	0;6	18	n	0.02	0.5	22	0;1	22	n	0.06	1.0	16	0;2	16	n	ENSMUSG00000030264.15	Thumpd3	chr6	protein_coding	THUMP domain containing 3
novel_NIR_15467	chr6	113026878	113027718	+	113026377	113027718	A5SS	ENSMUST00000134657.3	novel	0.00	0	8	0	8	n	0.00	0	18	0	18	n	0.21	6	22	6	22	n	0.07	1	13	1	13	n	0.11	3	25	3	25	n	0.00	0	10	0	10	n	0.28	5	13	5	13	y	0.00	0	11	0	11	n	0.08	1	11	1	11	n	0.25	6	18	6	18	y	0.04	1	22	1	22	n	0.11	2	16	2	16	n	ENSMUSG00000030264.15	Thumpd3	chr6	protein_coding	THUMP domain containing 3
novel_NIR_15468	chr6	113044776	113048255	-	113044779	113048255	A3SS	ENSMUST00000167415.8	novel	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	1.00	3	0	3	0	y	ENSMUSG00000086429.10	lncRNA	chr6	lncRNA	--
novel_NIR_15469	chr6	113083102	113086385	+	113082082	113086385	A5SS	ENSMUST00000125003.8	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.71	5	2	5	2	y	0.00	0	1	0	1	n	0.11	1	8	1	8	n	0.80	4	1	4	1	y	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.67	2	1	2	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000034269.13	Setd5	chr6	protein_coding	SET domain containing 5
novel_NIR_15470	chr6	113083102	113086385	+	113083102	113086846	A3SS	ENSMUST00000153513.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.28	5	13	5	13	y	0.00	0	2	0	2	n	0.08	1	12	1	12	n	0.50	4	4	4	4	y	0.00	0	3	0	3	n	0.14	1	6	1	6	n	0.29	2	5	2	5	y	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000034269.13	Setd5	chr6	protein_coding	SET domain containing 5
novel_NIR_15471	chr6	113087486;113087631	113087591;113087827	+	113087486	113087827	cassetteExon	ENSMUST00000042889.12	novel	0.08	0.5	6	1;0	6	n	0.08	1.0	11	0;2	11	n	0.20	8.5	34	11;6	34	y	0.27	6.5	18	5;8	18	y	0.36	13.5	24	16;11	24	y	0.16	1.5	8	3;0	8	n	0.17	2.5	12	2;3	12	y	0.32	6.0	13	7;5	13	y	0.03	0.5	15	1;0	15	n	0.25	6.5	19	4;9	19	y	0.00	0.0	4	0;0	4	n	0.41	7.0	10	7;7	10	y	ENSMUSG00000034269.13	Setd5	chr6	protein_coding	SET domain containing 5
novel_NIR_15472	chr6	113087486;113087716	113087591;113087827	+	113087486	113087827	cassetteExon	ENSMUST00000042889.12	novel	0.14	1.0	6	1;1	6	n	0.00	0.0	11	0;0	11	n	0.14	5.5	34	11;0	34	n	0.12	2.5	18	5;0	18	n	0.25	8.0	24	16;0	24	n	0.24	2.5	8	3;2	8	y	0.08	1.0	12	2;0	12	n	0.24	4.0	13	7;1	13	n	0.03	0.5	15	1;0	15	n	0.10	2.0	19	4;0	19	n	0.11	0.5	4	0;1	4	n	0.26	3.5	10	7;0	10	n	ENSMUSG00000034269.13	Setd5	chr6	protein_coding	SET domain containing 5
novel_NIR_15473	chr6	113087631	113087827	+	113087486	113087827	A5SS	ENSMUST00000042889.12	novel	0.00	0	6	0	6	n	0.15	2	11	2	11	y	0.15	6	34	6	34	n	0.31	8	18	8	18	n	0.31	11	24	11	24	n	0.00	0	8	0	8	n	0.20	3	12	3	12	n	0.28	5	13	5	13	n	0.00	0	15	0	15	n	0.32	9	19	9	19	n	0.00	0	4	0	4	n	0.41	7	10	7	10	n	ENSMUSG00000034269.13	Setd5	chr6	protein_coding	SET domain containing 5
novel_NIR_15474	chr6	113232899	113233623	+	113232882	113233623	A5SS	ENSMUST00000203385.2	novel	1.00	5	0	5	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000030269.15	Mtmr14	chr6	protein_coding	myotubularin related protein 14
novel_NIR_15475	chr6	113236356	113237549	+	113232804	113237549	A5SS	ENSMUST00000144976.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030269.15	Mtmr14	chr6	protein_coding	myotubularin related protein 14
novel_NIR_15476	chr6	113247662	113254756	+	113247662	113254792	A3SS	ENSMUST00000151149.2	novel	0.00	0	2	0	2	n	0.38	3	5	3	5	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.22	2	7	2	7	y	0.33	1	2	1	2	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000030269.15	Mtmr14	chr6	protein_coding	myotubularin related protein 14
novel_NIR_15477	chr6	113247662	113254756	+	113247662	113257564	A3SS	ENSMUST00000134945.8	novel	0.00	0	23	0	23	n	0.15	3	17	3	17	y	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	29	0	29	n	0.00	0	8	0	8	n	0.12	2	15	2	15	n	0.11	1	8	1	8	n	0.18	2	9	2	9	y	0.09	2	21	2	21	n	0.00	0	18	0	18	n	0.06	1	15	1	15	n	ENSMUSG00000030269.15	Mtmr14	chr6	protein_coding	myotubularin related protein 14
novel_NIR_15478	chr6	113300992	113303528	-	113297655	113303528	A3SS	ENSMUST00000156734.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.67	2	1	2	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	ENSMUSG00000085012.2	Gm15492	chr6	lncRNA	predicted gene 15492
novel_NIR_15479	chr6	113305440	113306190	+	113305440	113306107	A3SS	ENSMUST00000154350.3	novel	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	4	0	4	0	y	0.67	2	1	2	1	y	ENSMUSG00000030271.15	Ogg1	chr6	protein_coding	8-oxoguanine DNA-glycosylase 1
novel_NIR_15480	chr6	113305440	113306190	+	113305573	113306190	A5SS	ENSMUST00000032406.15	novel	0.00	0	10	0	10	n	0.06	1	15	1	15	n	0.00	0	18	0	18	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	21	0	21	n	0.00	0	5	0	5	n	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.33	4	8	4	8	y	0.29	2	5	2	5	y	ENSMUSG00000030271.15	Ogg1	chr6	protein_coding	8-oxoguanine DNA-glycosylase 1
novel_NIR_15481	chr6	113353906	113354451	-	113353906	113354277	5pMXE	ENSMUST00000043333.9	novel	0.00	0	15	0	15	n	0.20	2	8	2	8	y	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.10	1	9	1	9	n	0.00	0	10	0	10	n	0.09	1	10	1	10	n	0.06	1	15	1	15	n	0.07	1	13	1	13	n	0.00	0	15	0	15	n	ENSMUSG00000048930.13	Tada3	chr6	protein_coding	transcriptional adaptor 3
novel_NIR_15482	chr6	113353906	113354451	-	113353906;113354334	113354277;113354451	ES	ENSMUST00000193384.2	novel	0.00	0	8.0	0	15;1	n	0.33	2	4.0	2	8;0	y	0.00	0	6.5	0	13;0	n	0.00	0	5.0	0	10;0	n	0.00	0	6.0	0	12;0	n	0.00	0	6.5	0	13;0	n	0.18	1	4.5	1	9;0	n	0.00	0	5.0	0	10;0	n	0.15	1	5.5	1	10;1	n	0.12	1	7.5	1	15;0	n	0.13	1	6.5	1	13;0	n	0.00	0	7.5	0	15;0	n	ENSMUSG00000048930.13	Tada3	chr6	protein_coding	transcriptional adaptor 3
novel_NIR_15483	chr6	113393387	113393750	-	113393393	113393750	A3SS	ENSMUST00000060634.14	novel	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.54	7	6	7	6	y	0.00	0	5	0	5	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	ENSMUSG00000051169.15	Rpusd3	chr6	protein_coding	RNA pseudouridylate synthase domain containing 3
novel_NIR_15484	chr6	113419590	113424219	+	113419765	113424219	A5SS	ENSMUST00000204254.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	0.29	2	5	2	5	y	0.00	0	2	0	2	n	ENSMUSG00000051256.11	Jagn1	chr6	protein_coding	jagunal homolog 1
novel_NIR_15485	chr6	113593216	113605053	+	113601763	113605053	5pMXE	ENSMUST00000128770.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033933.14	Vhl	chr6	protein_coding	von Hippel-Lindau tumor suppressor
novel_NIR_15486	chr6	113593216	113605053	+	113602012	113605053	5pMXE	ENSMUST00000131819.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033933.14	Vhl	chr6	protein_coding	von Hippel-Lindau tumor suppressor
novel_NIR_15487	chr6	113681867;113686880	113686421;113687002	+	113681867;113684354	113684227;113687002	MXE	ENSMUST00000153661.2	novel	0.15	5.5	31.5	0;11	63;0	n	0.21	11.0	42.0	0;22	83;1	n	0.14	7.5	47.0	0;15	89;5	n	0.22	7.0	25.0	0;14	49;1	n	0.29	13.0	31.5	0;26	63;0	n	0.13	2.0	13.5	0;4	27;0	n	0.19	7.0	29.0	0;14	56;2	n	0.22	6.5	23.0	1;12	45;1	n	0.18	8.5	39.5	1;16	78;1	n	0.28	14.5	37.5	0;29	73;2	n	0.23	10.5	35.0	0;21	69;1	n	0.26	13.5	38.5	3;24	72;5	y	ENSMUSG00000056952.14	Tatdn2	chr6	protein_coding	TatD DNase domain containing 2
novel_NIR_15488	chr6	113686604;113686880	113686783;113687002	+	113686604	113687002	cassetteExon	ENSMUST00000089018.11	novel	0.16	9.5	49	8;11	49	y	0.21	18.5	70	15;22	70	y	0.10	10.5	95	6;15	95	n	0.16	12.5	68	11;14	68	y	0.29	22.0	53	18;26	53	y	0.21	8.0	31	12;4	31	y	0.17	14.5	69	15;14	69	y	0.15	9.0	52	6;12	52	y	0.23	16.5	55	17;16	55	y	0.19	25.5	111	22;29	111	y	0.21	17.5	65	14;21	65	y	0.28	27.5	69	31;24	69	y	ENSMUSG00000056952.14	Tatdn2	chr6	protein_coding	TatD DNase domain containing 2
novel_NIR_15489	chr6	113686880	113687002	+	113684354	113687002	A5SS	ENSMUST00000153661.2	novel	1.00	11	0	11	0	y	0.96	22	1	22	1	y	0.75	15	5	15	5	y	0.93	14	1	14	1	y	1.00	26	0	26	0	y	1.00	4	0	4	0	y	0.88	14	2	14	2	y	0.92	12	1	12	1	n	0.94	16	1	16	1	n	0.94	29	2	29	2	y	0.95	21	1	21	1	y	0.83	24	5	24	5	n	ENSMUSG00000056952.14	Tatdn2	chr6	protein_coding	TatD DNase domain containing 2
novel_NIR_15490	chr6	114620327	114649752	+	114620111	114649752	A5SS	ENSMUST00000182035.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	ENSMUSG00000030314.17	Atg7	chr6	protein_coding	autophagy related 7
novel_NIR_15491	chr6	114620327	114649752	+	114624018	114649752	A5SS&ES	ENSMUST00000182098.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000030314.17	Atg7	chr6	protein_coding	autophagy related 7
novel_NIR_15492	chr6	114620327	114649752	+	114635108	114649752	5pMXE	ENSMUST00000182771.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000030314.17	Atg7	chr6	protein_coding	autophagy related 7
novel_NIR_15493	chr6	114620327	114649752	+	114648213	114649752	A5SS&ES	ENSMUST00000182902.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000030314.17	Atg7	chr6	protein_coding	autophagy related 7
novel_NIR_15494	chr6	114621053	114623898	+	114620111	114623898	A5SS	ENSMUST00000182098.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	5	0	5	n	0.00	0	4	0	4	n	ENSMUSG00000030314.17	Atg7	chr6	protein_coding	autophagy related 7
novel_NIR_15495	chr6	114695710	114701855	+	114700212	114701855	5pMXE	ENSMUST00000182860.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030314.17	Atg7	chr6	protein_coding	autophagy related 7
novel_NIR_15496	chr6	114841040	114867336	-	114841040	114841414	5pMXE	ENSMUST00000123478.8	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000030315.16	Vgll4	chr6	protein_coding	vestigial like family member 4
novel_NIR_15497	chr6	114841040	114867336	-	114841040	114851726	5pMXE	ENSMUST00000155620.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000030315.16	Vgll4	chr6	protein_coding	vestigial like family member 4
novel_NIR_15498	chr6	114841040	114867336	-	114841040	114852000	5pMXE	ENSMUST00000152710.8	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	ENSMUSG00000030315.16	Vgll4	chr6	protein_coding	vestigial like family member 4
novel_NIR_15499	chr6	114867767	114870741	-	114867767	114898278	A5SS	ENSMUST00000032459.14	novel	0.25	1	3	1	3	n	1.00	1	0	1	0	n	0.38	3	5	3	5	y	0.00	0	3	0	3	n	0.30	3	7	3	7	y	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.50	4	4	4	4	y	0.00	0	2	0	2	n	0.25	3	9	3	9	y	ENSMUSG00000030315.16	Vgll4	chr6	protein_coding	vestigial like family member 4
novel_NIR_15500	chr6	114867767	114870741	-	114867767	114934897	A5SS	ENSMUST00000147639.8	novel	0.10	1	9	1	9	n	0.06	1	16	1	16	n	0.14	3	18	3	18	n	0.00	0	14	0	14	n	0.09	3	30	3	30	n	0.00	0	17	0	17	n	0.00	0	25	0	25	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.13	4	27	4	27	n	0.00	0	15	0	15	n	0.38	3	5	3	5	y	ENSMUSG00000030315.16	Vgll4	chr6	protein_coding	vestigial like family member 4
novel_NIR_15501	chr6	114867767	114918159	-	114867767	114898278	5pMXE	ENSMUST00000032459.14	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.12	1	7	1	7	n	0.00	0	2	0	2	n	0.27	3	8	3	8	y	0.00	0	5	0	5	n	0.71	5	2	5	2	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.10	1	9	1	9	n	ENSMUSG00000030315.16	Vgll4	chr6	protein_coding	vestigial like family member 4
novel_NIR_15502	chr6	114867767	114918159	-	114867767	114934897	A5SS	ENSMUST00000147639.8	novel	0.00	0	9	0	9	n	0.00	0	16	0	16	n	0.00	0	18	0	18	n	0.07	1	14	1	14	n	0.03	1	30	1	30	n	0.00	0	17	0	17	n	0.11	3	25	3	25	n	0.00	0	12	0	12	n	0.38	5	8	5	8	y	0.00	0	27	0	27	n	0.00	0	15	0	15	n	0.17	1	5	1	5	n	ENSMUSG00000030315.16	Vgll4	chr6	protein_coding	vestigial like family member 4
novel_NIR_15503	chr6	115226904	115227363	-	115226904	115227341	A5SS	ENSMUST00000032462.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.20	2	8	2	8	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030317.9	Timp4	chr6	protein_coding	tissue inhibitor of metalloproteinase 4
novel_NIR_15504	chr6	115337829	115360640	+	115338331	115360640	5pMXE	ENSMUST00000171644.8	novel	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.06	1	16	1	16	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.00	0	16	0	16	n	0.22	2	7	2	7	y	ENSMUSG00000000440.13	Pparg	chr6	protein_coding	peroxisome proliferator activated receptor gamma
novel_NIR_15505	chr6	115337829	115360640	+	115339378	115360640	5pMXE	ENSMUST00000203732.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000000440.13	Pparg	chr6	protein_coding	peroxisome proliferator activated receptor gamma
novel_NIR_15506	chr6	115395278	115416801	+	115384281	115416801	A5SS	ENSMUST00000205213.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000000440.13	Pparg	chr6	protein_coding	peroxisome proliferator activated receptor gamma
novel_NIR_15507	chr6	115395278	115416801	+	115399153	115416801	5pMXE	ENSMUST00000000450.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	16	0	16	n	0.25	2	6	2	6	y	0.33	1	2	1	2	n	ENSMUSG00000000440.13	Pparg	chr6	protein_coding	peroxisome proliferator activated receptor gamma
novel_NIR_15508	chr6	115621603	115646309	-	115621603	115652650	A5SS	ENSMUST00000112949.8	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.20	1	4	1	4	n	0.18	2	9	2	9	y	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	ENSMUSG00000000441.18	Raf1	chr6	protein_coding	v-raf-leukemia viral oncogene 1
novel_NIR_15509	chr6	115879872	115882819	+	115879872	115882756	A3SS	ENSMUST00000112925.8	novel	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.33	2	4	2	4	y	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	ENSMUSG00000030323.14	Ift122	chr6	protein_coding	intraflagellar transport 122
novel_NIR_15510	chr6	116020766	116049958	-	116020766	116033487	5pMXE	ENSMUST00000172510.4	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.57	4	3	4	3	y	0.80	8	2	8	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.29	2	5	2	5	y	0.33	1	2	1	2	n	0.00	0	3	0	3	n	1.00	4	0	4	0	y	ENSMUSG00000030126.18	Tmcc1	chr6	protein_coding	transmembrane and coiled coil domains 1
novel_NIR_15511	chr6	116020766	116049958	-	116020766	116033768	5pMXE	ENSMUST00000173140.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	8	0	8	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000030126.18	Tmcc1	chr6	protein_coding	transmembrane and coiled coil domains 1
novel_NIR_15512	chr6	116020766	116049958	-	116020766	116049973	A5SS	ENSMUST00000173548.3	novel	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.17	4	20	4	20	y	0.27	8	22	8	22	y	0.00	0	12	0	12	n	0.04	1	26	1	26	n	0.00	0	2	0	2	n	0.09	2	21	2	21	n	0.03	1	35	1	35	n	0.00	0	16	0	16	n	0.14	4	24	4	24	n	ENSMUSG00000030126.18	Tmcc1	chr6	protein_coding	transmembrane and coiled coil domains 1
novel_NIR_15513	chr6	116020766	116049958	-	116020766	116069991	A5SS	ENSMUST00000173110.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	0.89	8	1	8	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000030126.18	Tmcc1	chr6	protein_coding	transmembrane and coiled coil domains 1
novel_NIR_15514	chr6	116020766	116049958	-	116020766	116078491	A5SS	ENSMUST00000032222.16	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	8	0	8	0	y	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000030126.18	Tmcc1	chr6	protein_coding	transmembrane and coiled coil domains 1
novel_NIR_15515	chr6	116020766	116049958	-	116020766	116084273	A5SS	ENSMUST00000204353.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	4	0	4	0	y	1.00	8	0	8	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000030126.18	Tmcc1	chr6	protein_coding	transmembrane and coiled coil domains 1
novel_NIR_15516	chr6	116020766	116049958	-	116020766	116110728	A5SS	ENSMUST00000088896.10	novel	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.00	0	26	0	26	n	0.20	4	16	4	16	y	0.19	8	34	8	34	y	0.00	0	11	0	11	n	0.08	1	11	1	11	n	0.00	0	8	0	8	n	0.14	2	12	2	12	n	0.05	1	19	1	19	n	0.00	0	14	0	14	n	0.21	4	15	4	15	y	ENSMUSG00000030126.18	Tmcc1	chr6	protein_coding	transmembrane and coiled coil domains 1
novel_NIR_15517	chr6	116098674	116110728	-	116020766	116110728	A3SS	ENSMUST00000088896.10	novel	0.00	0	12	0	12	n	0.50	2	2	2	2	y	0.00	0	26	0	26	n	0.00	0	16	0	16	n	0.00	0	34	0	34	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.05	1	19	1	19	n	0.00	0	14	0	14	n	0.00	0	15	0	15	n	ENSMUSG00000030126.18	Tmcc1	chr6	protein_coding	transmembrane and coiled coil domains 1
novel_NIR_15518	chr6	116098674	116110728	-	116070113	116110728	A3SS	ENSMUST00000173110.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030126.18	Tmcc1	chr6	protein_coding	transmembrane and coiled coil domains 1
novel_NIR_15519	chr6	116098674	116110728	-	116078622	116110728	A3SS	ENSMUST00000032222.16	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030126.18	Tmcc1	chr6	protein_coding	transmembrane and coiled coil domains 1
novel_NIR_15520	chr6	116098674	116110728	-	116084477	116110728	A3SS	ENSMUST00000172909.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030126.18	Tmcc1	chr6	protein_coding	transmembrane and coiled coil domains 1
novel_NIR_15521	chr6	116098674	116110728	-	116108850	116110728	3pMXE	ENSMUST00000173031.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000030126.18	Tmcc1	chr6	protein_coding	transmembrane and coiled coil domains 1
novel_NIR_15522	chr6	116111418	116113025	-	116111418	116115156	A5SS	ENSMUST00000088896.10	novel	0.00	0	14	0	14	n	0.00	0	3	0	3	n	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.17	2	10	2	10	y	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	ENSMUSG00000030126.18	Tmcc1	chr6	protein_coding	transmembrane and coiled coil domains 1
novel_NIR_15523	chr6	116115211	116153834	-	116115211	116148607	5pMXE	ENSMUST00000173031.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030126.18	Tmcc1	chr6	protein_coding	transmembrane and coiled coil domains 1
novel_NIR_15524	chr6	116115211	116153834	-	116115211	116170219	A5SS	ENSMUST00000088896.10	novel	0.25	2	6	2	6	y	0.00	0	2	0	2	n	0.00	0	19	0	19	n	0.10	1	9	1	9	n	0.00	0	14	0	14	n	0.00	0	3	0	3	n	0.00	0	14	0	14	n	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	ENSMUSG00000030126.18	Tmcc1	chr6	protein_coding	transmembrane and coiled coil domains 1
novel_NIR_15525	chr6	116184218	116184746	-	116184218	116184863	A5SS	ENSMUST00000203332.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000108030.2	9530062K07Rik	chr6	lncRNA	RIKEN cDNA 9530062K07 gene
novel_NIR_15526	chr6	116241706	116250534	+	116241273	116250534	A5SS	ENSMUST00000222819.2	novel	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.12	3	23	3	23	n	0.14	2	12	2	12	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.07	1	14	1	14	n	0.19	3	13	3	13	y	0.00	0	9	0	9	n	0.08	2	24	2	24	n	ENSMUSG00000042213.18	Zfand4	chr6	protein_coding	zinc finger, AN1-type domain 4
novel_NIR_15527	chr6	116241706	116250534	+	116243541	116250534	5pMXE	ENSMUST00000222494.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.25	3	9	3	9	y	0.00	0	9	0	9	n	1.00	2	0	2	0	y	ENSMUSG00000042213.18	Zfand4	chr6	protein_coding	zinc finger, AN1-type domain 4
novel_NIR_15528	chr6	116261776	116264943	+	116250833	116264943	A5SS	ENSMUST00000221239.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.40	2	3	2	3	y	ENSMUSG00000042213.18	Zfand4	chr6	protein_coding	zinc finger, AN1-type domain 4
novel_NIR_15529	chr6	116261776	116264943	+	116263573	116264943	5pMXE	ENSMUST00000221069.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.67	2	1	2	1	y	ENSMUSG00000042213.18	Zfand4	chr6	protein_coding	zinc finger, AN1-type domain 4
novel_NIR_15530	chr6	116262882	116263351	+	116262882	116264943	A3SS	ENSMUST00000222819.2	novel	0.19	3	13	3	13	y	0.00	0	24	0	24	n	0.00	0	20	0	20	n	0.04	1	24	1	24	n	0.09	3	32	3	32	n	0.00	0	16	0	16	n	0.00	0	34	0	34	n	0.00	0	22	0	22	n	0.10	3	28	3	28	n	0.12	4	30	4	30	n	0.03	1	35	1	35	n	0.04	3	65	3	65	n	ENSMUSG00000042213.18	Zfand4	chr6	protein_coding	zinc finger, AN1-type domain 4
novel_NIR_15531	chr6	116292603	116306310	+	116292603;116305285	116305168;116306310	ES	ENSMUST00000222819.2	novel	0.00	0	23.5	0	19;28	n	0.16	3	16.0	3	21;11	y	0.11	2	17.0	2	25;9	n	0.03	1	32.5	1	44;21	n	0.04	2	43.5	2	38;49	n	0.00	0	17.5	0	17;18	n	0.00	0	30.5	0	30;31	n	0.00	0	25.0	0	28;22	n	0.06	2	30.0	2	34;26	n	0.09	3	29.0	3	33;25	n	0.00	0	36.5	0	39;34	n	0.02	1	52.0	1	56;48	n	ENSMUSG00000042213.18	Zfand4	chr6	protein_coding	zinc finger, AN1-type domain 4
novel_NIR_15532	chr6	116292603	116306310	+	116305285	116306310	A5SS&ES	ENSMUST00000223495.2	novel	0.00	0	28	0	28	n	0.21	3	11	3	11	y	0.18	2	9	2	9	y	0.05	1	21	1	21	n	0.04	2	49	2	49	n	0.00	0	18	0	18	n	0.00	0	31	0	31	n	0.00	0	22	0	22	n	0.07	2	26	2	26	n	0.11	3	25	3	25	n	0.00	0	34	0	34	n	0.02	1	48	1	48	n	ENSMUSG00000042213.18	Zfand4	chr6	protein_coding	zinc finger, AN1-type domain 4
novel_NIR_15533	chr6	116315176	116315277	+	116315176	116315347	A3SS	ENSMUST00000079012.13	novel	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	16	0	16	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.20	2	8	2	8	y	0.00	0	12	0	12	n	ENSMUSG00000025702.16	Marchf8	chr6	protein_coding	membrane associated ring-CH-type finger 8
novel_NIR_15534	chr6	116315176	116369485	+	116315176;116315451	116315347;116369485	ES	ENSMUST00000203193.3	novel	0.00	0	7.5	0	9;6	n	0.12	1	7.0	1	9;5	n	0.00	0	8.5	0	7;10	n	0.07	1	12.5	1	16;9	n	0.09	1	10.0	1	12;8	n	0.00	0	6.0	0	6;6	n	0.00	0	6.5	0	11;2	n	0.00	0	4.0	0	7;1	n	0.00	0	7.5	0	10;5	n	0.10	1	9.5	1	14;5	n	0.15	1	5.5	1	8;3	n	0.21	2	7.5	2	12;3	y	ENSMUSG00000025702.16	Marchf8	chr6	protein_coding	membrane associated ring-CH-type finger 8
novel_NIR_15535	chr6	116315176	116369485	+	116363265	116369485	5pMXE	ENSMUST00000135901.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.67	2	1	2	1	y	ENSMUSG00000025702.16	Marchf8	chr6	protein_coding	membrane associated ring-CH-type finger 8
novel_NIR_15536	chr6	116315447	116353654	+	116315176	116353654	A5SS	ENSMUST00000204657.3	novel	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.10	2	18	2	18	n	0.07	1	13	1	13	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.56	5	4	5	4	y	0.10	1	9	1	9	n	0.00	0	26	0	26	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	ENSMUSG00000025702.16	Marchf8	chr6	protein_coding	membrane associated ring-CH-type finger 8
novel_NIR_15537	chr6	116315447	116353654	+	116315451	116353654	A5SS	ENSMUST00000079012.13	novel	0.00	0	51	0	51	n	0.00	0	32	0	32	n	0.03	2	64	2	64	n	0.01	1	72	1	72	n	0.00	0	87	0	87	n	0.00	0	38	0	38	n	0.00	0	59	0	59	n	0.18	5	23	5	23	y	0.02	1	43	1	43	n	0.00	0	105	0	105	n	0.00	0	46	0	46	n	0.00	0	64	0	64	n	ENSMUSG00000025702.16	Marchf8	chr6	protein_coding	membrane associated ring-CH-type finger 8
novel_NIR_15538	chr6	116315447	116353654	+	116327917	116353654	5pMXE	ENSMUST00000140884.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025702.16	Marchf8	chr6	protein_coding	membrane associated ring-CH-type finger 8
novel_NIR_15539	chr6	116315447	116353654	+	116353136	116353654	A5SS&ES	ENSMUST00000126376.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.11	1	8	1	8	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.71	5	2	5	2	y	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000025702.16	Marchf8	chr6	protein_coding	membrane associated ring-CH-type finger 8
novel_NIR_15540	chr6	116378083	116378735	+	116378083	116378298	A3SS	ENSMUST00000123405.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.25	1	3	1	3	n	ENSMUSG00000025702.16	Marchf8	chr6	protein_coding	membrane associated ring-CH-type finger 8
novel_NIR_15541	chr6	116378083	116378735	+	116378083	116378377	A3SS	ENSMUST00000127992.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000025702.16	Marchf8	chr6	protein_coding	membrane associated ring-CH-type finger 8
novel_NIR_15542	chr6	116378083	116380440	+	116378083	116378298	A3SS&ES	ENSMUST00000123405.8	novel	0.60	3	2	3	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000025702.16	Marchf8	chr6	protein_coding	membrane associated ring-CH-type finger 8
novel_NIR_15543	chr6	116378083	116380440	+	116378083	116378377	3pMXE	ENSMUST00000127992.7	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025702.16	Marchf8	chr6	protein_coding	membrane associated ring-CH-type finger 8
novel_NIR_15544	chr6	117150539	117155356	+	117150539	117153047	A3SS	ENSMUST00000073043.5	novel	0.22	2	7	2	7	y	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	ENSMUSG00000061353.12	Cxcl12	chr6	protein_coding	chemokine (C-X-C motif) ligand 12
novel_NIR_15545	chr6	117150539	117158139	+	117150539	117153047	A3SS	ENSMUST00000073043.5	novel	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.20	1	4	1	4	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.11	1	8	1	8	n	0.00	0	4	0	4	n	0.43	3	4	3	4	y	ENSMUSG00000061353.12	Cxcl12	chr6	protein_coding	chemokine (C-X-C motif) ligand 12
novel_NIR_15546	chr6	117819757	117820214	+	117818242	117820214	A5SS	ENSMUST00000134526.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000059689.16	Zfp637	chr6	protein_coding	zinc finger protein 637
novel_NIR_15547	chr6	117819757	117820214	+	117818358	117820214	A5SS	ENSMUST00000136889.8	novel	0.00	0	4	0	4	n	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.15	2	11	2	11	n	0.33	2	4	2	4	y	0.00	0	11	0	11	n	0.07	1	13	1	13	n	0.00	0	11	0	11	n	0.08	1	12	1	12	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	ENSMUSG00000059689.16	Zfp637	chr6	protein_coding	zinc finger protein 637
novel_NIR_15548	chr6	117819757	117820214	+	117819075	117820214	A5SS	ENSMUST00000112861.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	1.00	2	0	2	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000059689.16	Zfp637	chr6	protein_coding	zinc finger protein 637
novel_NIR_15549	chr6	117820567	117821944	+	117820353	117821944	A5SS	ENSMUST00000137224.8	novel	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.08	1	12	1	12	n	0.00	0	15	0	15	n	0.40	2	3	2	3	y	0.10	2	18	2	18	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.33	1	2	1	2	n	ENSMUSG00000059689.16	Zfp637	chr6	protein_coding	zinc finger protein 637
novel_NIR_15550	chr6	117820567	117821944	+	117820567	117821986	A3SS	ENSMUST00000132644.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.67	2	1	2	1	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	4	0	4	n	1.00	1	0	1	0	n	ENSMUSG00000059689.16	Zfp637	chr6	protein_coding	zinc finger protein 637
novel_NIR_15551	chr6	117884840	117894431	+	117877467	117894431	A5SS	ENSMUST00000177743.8	novel	1.00	8	0	8	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	9	0	9	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000042079.14	Hnrnpf	chr6	protein_coding	heterogeneous nuclear ribonucleoprotein F
novel_NIR_15552	chr6	117884840	117894431	+	117883800	117894431	A5SS	ENSMUST00000035493.14	novel	0.20	8	33	8	33	y	0.00	0	16	0	16	n	0.00	0	64	0	64	n	0.08	3	35	3	35	n	0.00	0	46	0	46	n	0.00	0	30	0	30	n	0.04	1	26	1	26	n	0.00	0	23	0	23	n	0.21	9	34	9	34	y	0.00	0	41	0	41	n	0.00	0	31	0	31	n	0.00	0	41	0	41	n	ENSMUSG00000042079.14	Hnrnpf	chr6	protein_coding	heterogeneous nuclear ribonucleoprotein F
novel_NIR_15553	chr6	117884840	117894431	+	117884169	117894431	A5SS	ENSMUST00000179224.8	novel	0.14	8	50	8	50	n	0.00	0	46	0	46	n	0.00	0	101	0	101	n	0.04	3	71	3	71	n	0.00	0	83	0	83	n	0.00	0	30	0	30	n	0.01	1	82	1	82	n	0.00	0	39	0	39	n	0.20	9	37	9	37	y	0.00	0	66	0	66	n	0.00	0	42	0	42	n	0.00	0	67	0	67	n	ENSMUSG00000042079.14	Hnrnpf	chr6	protein_coding	heterogeneous nuclear ribonucleoprotein F
novel_NIR_15554	chr6	117884840	117894431	+	117894032	117894431	5pMXE	ENSMUST00000179478.8	novel	0.23	8	27	8	27	y	0.00	0	23	0	23	n	0.00	0	28	0	28	n	0.06	3	47	3	47	n	0.00	0	56	0	56	n	0.00	0	25	0	25	n	0.02	1	41	1	41	n	0.00	0	41	0	41	n	0.23	9	30	9	30	y	0.00	0	37	0	37	n	0.00	0	27	0	27	n	0.00	0	58	0	58	n	ENSMUSG00000042079.14	Hnrnpf	chr6	protein_coding	heterogeneous nuclear ribonucleoprotein F
novel_NIR_15555	chr6	118086355	118086668	-	118086355	118091327	A5SS	ENSMUST00000125531.2	novel	0.00	0	10	0	10	n	0.23	3	10	3	10	y	0.00	0	61	0	61	n	0.00	0	11	0	11	n	0.00	0	34	0	34	n	0.00	0	39	0	39	n	0.00	0	28	0	28	n	0.00	0	18	0	18	n	0.00	0	8	0	8	n	0.00	0	19	0	19	n	0.00	0	12	0	12	n	0.00	0	21	0	21	n	ENSMUSG00000042042.15	Csgalnact2	chr6	protein_coding	chondroitin sulfate N-acetylgalactosaminyltransferase 2
novel_NIR_15556	chr6	118096665	118098015	-	118096665	118097906	A5SS	ENSMUST00000125531.2	novel	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.03	1	37	1	37	n	0.17	2	10	2	10	y	0.00	0	21	0	21	n	0.00	0	25	0	25	n	0.00	0	26	0	26	n	0.00	0	20	0	20	n	0.00	0	9	0	9	n	0.00	0	20	0	20	n	0.09	1	10	1	10	n	0.00	0	10	0	10	n	ENSMUSG00000042042.15	Csgalnact2	chr6	protein_coding	chondroitin sulfate N-acetylgalactosaminyltransferase 2
novel_NIR_15557	chr6	118106580	118115474	-	118106580	118115984	A5SS	ENSMUST00000049344.15	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.22	4	14	4	14	y	0.07	1	14	1	14	n	0.00	0	8	0	8	n	0.00	0	19	0	19	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.50	1	1	1	1	n	0.14	1	6	1	6	n	0.33	1	2	1	2	n	0.00	0	6	0	6	n	ENSMUSG00000042042.15	Csgalnact2	chr6	protein_coding	chondroitin sulfate N-acetylgalactosaminyltransferase 2
novel_NIR_15558	chr6	118106580	118115587	-	118106580	118115984	A5SS	ENSMUST00000049344.15	novel	0.67	4	2	4	2	y	1.00	4	0	4	0	y	0.07	1	14	1	14	n	0.07	1	14	1	14	n	0.20	2	8	2	8	y	0.10	2	19	2	19	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.50	6	6	6	6	y	0.00	0	2	0	2	n	0.14	1	6	1	6	n	ENSMUSG00000042042.15	Csgalnact2	chr6	protein_coding	chondroitin sulfate N-acetylgalactosaminyltransferase 2
novel_NIR_15559	chr6	118140248	118140824	-	118140248	118141684	A5SS	ENSMUST00000032201.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000030110.14	Ret	chr6	protein_coding	ret proto-oncogene
novel_NIR_15560	chr6	118393503	118395370	-	118390880	118395370	A3SS	ENSMUST00000203444.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000030138.9	Bms1	chr6	protein_coding	BMS1, ribosome biogenesis factor
novel_NIR_15561	chr6	118442859	118443804	-	118442859	118443789	A5SS	ENSMUST00000161170.2	novel	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	16	0	16	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.20	2	8	2	8	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000072623.7	Zfp9	chr6	protein_coding	zinc finger protein 9
novel_NIR_15562	chr6	118516836	118517397	-	118516836	118517412	A5SS	ENSMUST00000112830.3	novel	0.75	3	1	3	1	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.80	8	2	8	2	y	0.50	1	1	1	1	n	1.00	3	0	3	0	y	0.00	0	5	0	5	n	ENSMUSG00000007827.11	Ankrd26	chr6	protein_coding	ankyrin repeat domain 26
novel_NIR_15563	chr6	118526230	118526347	-	118525920	118526347	A3SS	ENSMUST00000112830.3	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.22	2	7	2	7	y	0.50	1	1	1	1	n	0.00	0	4	0	4	n	0.50	1	1	1	1	n	0.00	0	4	0	4	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	ENSMUSG00000007827.11	Ankrd26	chr6	protein_coding	ankyrin repeat domain 26
novel_NIR_15564	chr6	119175955	119177767	+	119175955	119177783	A3SS	ENSMUST00000112777.9	novel	0.00	0	4	0	4	n	0.75	3	1	3	1	y	0.00	0	7	0	7	n	0.20	1	4	1	4	n	0.00	0	7	0	7	n	0.17	1	5	1	5	n	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.17	1	5	1	5	n	0.00	0	8	0	8	n	ENSMUSG00000041477.15	Dcp1b	chr6	protein_coding	decapping mRNA 1B
novel_NIR_15565	chr6	119347369	119349599	-	119347369	119367181	A5SS	ENSMUST00000187699.7	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000030168.14	Adipor2	chr6	protein_coding	adiponectin receptor 2
novel_NIR_15566	chr6	119347369	119349599	-	119347369	119377684	A5SS	ENSMUST00000189710.2	novel	0.33	1	2	1	2	n	1.00	1	0	1	0	n	0.62	5	3	5	3	n	0.83	5	1	5	1	n	0.22	2	7	2	7	n	0.38	3	5	3	5	y	1.00	6	0	6	0	n	0.00	0	2	0	2	n	0.43	3	4	3	4	y	0.57	4	3	4	3	n	0.00	0	7	0	7	n	0.50	3	3	3	3	y	ENSMUSG00000030168.14	Adipor2	chr6	protein_coding	adiponectin receptor 2
novel_NIR_15567	chr6	119347369	119364751	-	119347369	119367181	A5SS	ENSMUST00000187699.7	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	8	0	8	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	12	0	12	0	y	1.00	10	0	10	0	y	1.00	9	0	9	0	y	ENSMUSG00000030168.14	Adipor2	chr6	protein_coding	adiponectin receptor 2
novel_NIR_15568	chr6	119347369	119364751	-	119347369	119377684	A5SS	ENSMUST00000189710.2	novel	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.25	1	3	1	3	n	0.89	8	1	8	1	n	0.36	4	7	4	7	y	0.00	0	5	0	5	n	1.00	3	0	3	0	y	0.67	4	2	4	2	y	0.43	3	4	3	4	y	0.80	12	3	12	3	y	0.59	10	7	10	7	y	0.75	9	3	9	3	y	ENSMUSG00000030168.14	Adipor2	chr6	protein_coding	adiponectin receptor 2
novel_NIR_15569	chr6	119347369	119374490	-	119347369	119365443	5pMXE	ENSMUST00000169744.8	novel	0.08	4	46	4	46	n	0.15	5	29	5	29	y	0.03	3	94	3	94	n	0.07	5	65	5	65	n	0.04	5	120	5	120	n	0.00	0	75	0	75	n	0.05	4	82	4	82	n	0.06	5	84	5	84	n	0.02	1	46	1	46	n	0.14	12	75	12	75	n	0.02	1	45	1	45	n	0.01	1	85	1	85	n	ENSMUSG00000030168.14	Adipor2	chr6	protein_coding	adiponectin receptor 2
novel_NIR_15570	chr6	119347369	119374490	-	119347369	119367181	5pMXE	ENSMUST00000187699.7	novel	1.00	4	0	4	0	y	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	5	0	5	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	12	0	12	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000030168.14	Adipor2	chr6	protein_coding	adiponectin receptor 2
novel_NIR_15571	chr6	119347369	119374490	-	119347369	119377684	A5SS	ENSMUST00000189710.2	novel	0.67	4	2	4	2	n	1.00	5	0	5	0	n	0.50	3	3	3	3	n	0.83	5	1	5	1	y	0.42	5	7	5	7	n	0.00	0	5	0	5	n	1.00	4	0	4	0	n	0.71	5	2	5	2	y	0.20	1	4	1	4	n	0.80	12	3	12	3	n	0.12	1	7	1	7	n	0.25	1	3	1	3	n	ENSMUSG00000030168.14	Adipor2	chr6	protein_coding	adiponectin receptor 2
novel_NIR_15572	chr6	119347369	119389366	-	119347369	119367181	5pMXE	ENSMUST00000187699.7	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	ENSMUSG00000030168.14	Adipor2	chr6	protein_coding	adiponectin receptor 2
novel_NIR_15573	chr6	119347369	119389366	-	119347369	119377684	A5SS&ES	ENSMUST00000189710.2	novel	0.00	0	2	0	2	n	1.00	2	0	2	0	n	0.25	1	3	1	3	n	0.75	3	1	3	1	y	0.00	0	7	0	7	n	0.00	0	5	0	5	n	1.00	5	0	5	0	n	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.36	4	7	4	7	n	0.00	0	3	0	3	n	ENSMUSG00000030168.14	Adipor2	chr6	protein_coding	adiponectin receptor 2
novel_NIR_15574	chr6	119347369;119349665	119349599;119394381	-	119347369;119378983	119377684;119394381	MXE	ENSMUST00000189710.2	novel	0.33	0.5	1.0	1;0	2;0	n	1.00	0.5	0.0	1;0	0;0	n	0.77	5.0	1.5	5;5	3;0	y	0.90	4.5	0.5	5;4	1;0	y	0.33	2.0	4.0	2;2	7;1	y	0.38	1.5	2.5	3;0	5;0	n	1.00	3.5	0.0	6;1	0;0	n	0.50	1.0	1.0	0;2	2;0	n	0.43	1.5	2.0	3;0	4;0	n	0.62	2.5	1.5	4;1	3;0	n	0.30	1.5	3.5	0;3	7;0	n	0.50	1.5	1.5	3;0	3;0	n	ENSMUSG00000030168.14	Adipor2	chr6	protein_coding	adiponectin receptor 2
novel_NIR_15575	chr6	119347369;119374598	119374490;119377684	-	119347369	119377684	cassetteExon	ENSMUST00000189710.2	novel	0.60	3.0	2	4;2	2	y	1.00	2.5	0	5;0	0	n	0.33	1.5	3	3;0	3	n	0.71	2.5	1	5;0	1	n	0.26	2.5	7	5;0	7	n	0.00	0.0	5	0;0	5	n	1.00	2.0	0	4;0	0	n	0.56	2.5	2	5;0	2	n	0.11	0.5	4	1;0	4	n	0.67	6.0	3	12;0	3	n	0.18	1.5	7	1;2	7	n	0.14	0.5	3	1;0	3	n	ENSMUSG00000030168.14	Adipor2	chr6	protein_coding	adiponectin receptor 2
novel_NIR_15576	chr6	119347369;119374598	119374490;119394381	-	119347369;119378983	119377684;119394381	MXE	ENSMUST00000189710.2	novel	0.80	4.0	1.0	4;4	2;0	y	1.00	3.0	0.0	5;1	0;0	n	0.79	5.5	1.5	3;8	3;0	y	0.83	2.5	0.5	5;0	1;0	n	0.56	5.0	4.0	5;5	7;1	y	0.29	1.0	2.5	0;2	5;0	n	1.00	3.5	0.0	4;3	0;0	y	0.71	2.5	1.0	5;0	2;0	n	0.43	1.5	2.0	1;2	4;0	n	0.87	10.0	1.5	12;8	3;0	y	0.12	0.5	3.5	1;0	7;0	n	0.25	0.5	1.5	1;0	3;0	n	ENSMUSG00000030168.14	Adipor2	chr6	protein_coding	adiponectin receptor 2
novel_NIR_15577	chr6	119349665	119394381	-	119378983	119394381	A3SS&ES	ENSMUST00000189710.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	n	1.00	4	0	4	0	n	0.67	2	1	2	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000030168.14	Adipor2	chr6	protein_coding	adiponectin receptor 2
novel_NIR_15578	chr6	119374598	119394381	-	119378983	119394381	A3SS&ES	ENSMUST00000189710.2	novel	1.00	4	0	4	0	n	1.00	1	0	1	0	n	1.00	8	0	8	0	n	-	-	-	-	-	-	0.83	5	1	5	1	n	1.00	2	0	2	0	y	1.00	3	0	3	0	n	-	-	-	-	-	-	1.00	2	0	2	0	n	1.00	8	0	8	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030168.14	Adipor2	chr6	protein_coding	adiponectin receptor 2
novel_NIR_15579	chr6	119376725	119394381	-	119378983	119394381	A3SS&ES	ENSMUST00000189710.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030168.14	Adipor2	chr6	protein_coding	adiponectin receptor 2
novel_NIR_15580	chr6	119377746	119394381	-	119378983	119394381	A3SS&ES	ENSMUST00000189710.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030168.14	Adipor2	chr6	protein_coding	adiponectin receptor 2
novel_NIR_15581	chr6	119377759	119394381	-	119378983	119394381	A3SS&ES	ENSMUST00000189710.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.75	3	1	3	1	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000030168.14	Adipor2	chr6	protein_coding	adiponectin receptor 2
novel_NIR_15582	chr6	119377844	119394381	-	119377844;119378983	119378880;119394381	ES	ENSMUST00000189710.2	novel	-	-	-	-	-	-	0.00	0	2.0	0	4;0	n	0.00	0	1.5	0	3;0	n	-	-	-	-	-	-	0.00	0	0.5	0	0;1	n	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	1.00	2	0.0	2	0;0	y	0.57	2	1.5	2	3;0	y	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	1.00	1	0.0	1	0;0	n	ENSMUSG00000030168.14	Adipor2	chr6	protein_coding	adiponectin receptor 2
novel_NIR_15583	chr6	119389674	119394381	-	119378983	119394381	A3SS	ENSMUST00000189710.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.80	4	1	4	1	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000030168.14	Adipor2	chr6	protein_coding	adiponectin receptor 2
novel_NIR_15584	chr6	119441108	119444060	-	119425233	119444060	A3SS	ENSMUST00000118120.8	novel	0.64	27	15	27	15	y	0.70	14	6	14	6	y	0.64	7	4	7	4	y	0.59	30	21	30	21	y	0.56	31	24	31	24	y	0.67	16	8	16	8	y	0.39	16	25	16	25	y	0.70	14	6	14	6	y	0.21	4	15	4	15	y	0.70	21	9	21	9	y	0.63	17	10	17	10	y	0.29	7	17	7	17	y	ENSMUSG00000030170.15	Wnt5b	chr6	protein_coding	wingless-type MMTV integration site family, member 5B
novel_NIR_15585	chr6	119801580	119802111	-	119801580	119824838	A5SS	ENSMUST00000079582.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000030172.16	Erc1	chr6	protein_coding	ELKS/RAB6-interacting/CAST family member 1
novel_NIR_15586	chr6	119890949	119891131	+	119890064	119891131	A5SS	ENSMUST00000162205.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030166.15	Rad52	chr6	protein_coding	RAD52 homolog, DNA repair protein
novel_NIR_15587	chr6	119890949	119891131	+	119890953	119891131	A5SS	ENSMUST00000162461.7	novel	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	20	0	20	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.20	2	8	2	8	y	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	ENSMUSG00000030166.15	Rad52	chr6	protein_coding	RAD52 homolog, DNA repair protein
novel_NIR_15588	chr6	119895747	119895890	+	119895747	119895887	A3SS	ENSMUST00000162461.7	novel	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.50	2	2	2	2	y	0.11	1	8	1	8	n	0.33	3	6	3	6	y	-	-	-	-	-	-	0.57	4	3	4	3	y	0.20	2	8	2	8	y	0.00	0	4	0	4	n	0.25	2	6	2	6	y	ENSMUSG00000030166.15	Rad52	chr6	protein_coding	RAD52 homolog, DNA repair protein
novel_NIR_15589	chr6	119897980	119899433	+	119897989	119899433	A5SS	ENSMUST00000162461.7	novel	0.00	0	6	0	6	n	0.17	2	10	2	10	y	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.18	2	9	2	9	y	ENSMUSG00000030166.15	Rad52	chr6	protein_coding	RAD52 homolog, DNA repair protein
novel_NIR_15590	chr6	119933154	119937605	-	119933157	119937605	A3SS	ENSMUST00000060043.13	novel	0.00	0	18	0	18	n	0.10	1	9	1	9	n	0.11	5	40	5	40	n	0.03	1	28	1	28	n	0.21	8	30	8	30	y	0.00	0	24	0	24	n	0.00	0	35	0	35	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.14	4	25	4	25	n	0.00	0	9	0	9	n	0.28	11	29	11	29	y	ENSMUSG00000045962.17	Wnk1	chr6	protein_coding	WNK lysine deficient protein kinase 1
novel_NIR_15591	chr6	12007105	12044464	+	12007105	12007704	3pMXE	ENSMUST00000115510.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	1.00	3	0	3	0	y	0.00	0	3	0	3	n	ENSMUSG00000029629.18	Phf14	chr6	protein_coding	PHD finger protein 14
novel_NIR_15592	chr6	12007105	12080996	+	12007105	12007704	3pMXE	ENSMUST00000115510.8	novel	0.50	1	1	1	1	n	0.75	3	1	3	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	1	2	1	2	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.50	3	3	3	3	y	ENSMUSG00000029629.18	Phf14	chr6	protein_coding	PHD finger protein 14
novel_NIR_15593	chr6	12007105;12044489	12044464;12047826	+	12007105;12045763	12045584;12047826	MXE	ENSMUST00000203045.2	novel	0.00	0.0	1.0	0;0	0;2	n	-	-	-	-	-	-	0.00	0.0	2.0	0;0	0;4	n	0.75	1.5	0.5	1;2	1;0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	0.5	0.5	0;1	0;1	n	-	-	-	-	-	-	0.78	3.5	1.0	3;4	0;2	y	0.50	0.5	0.5	0;1	0;1	n	ENSMUSG00000029629.18	Phf14	chr6	protein_coding	PHD finger protein 14
novel_NIR_15594	chr6	120209952	120229629	-	120209952	120219524	5pMXE	ENSMUST00000125341.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000041372.11	B4galnt3	chr6	protein_coding	beta-1,4-N-acetyl-galactosaminyl transferase 3
novel_NIR_15595	chr6	120209952	120229629	-	120209952	120271352	A5SS	ENSMUST00000057283.8	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000041372.11	B4galnt3	chr6	protein_coding	beta-1,4-N-acetyl-galactosaminyl transferase 3
novel_NIR_15596	chr6	120311878	120316096	-	120311878	120315030	A5SS&ES	ENSMUST00000127146.8	novel	0.40	2	3	2	3	y	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	ENSMUSG00000030177.15	Ccdc77	chr6	protein_coding	coiled-coil domain containing 77
novel_NIR_15597	chr6	120311878	120316096	-	120311878	120318934	A5SS	ENSMUST00000163827.8	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000030177.15	Ccdc77	chr6	protein_coding	coiled-coil domain containing 77
novel_NIR_15598	chr6	120311878	120316096	-	120311878;120315121	120315030;120316096	ES	ENSMUST00000032283.12	novel	0.31	2	4.5	2	3;6	y	0.00	0	5.0	0	7;3	n	0.00	0	2.0	0	1;3	n	0.00	0	5.0	0	6;4	n	0.00	0	7.0	0	10;4	n	0.00	0	1.5	0	3;0	n	0.00	0	3.5	0	6;1	n	0.00	0	2.5	0	3;2	n	0.22	1	3.5	1	4;3	n	0.00	0	2.5	0	4;1	n	0.00	0	3.0	0	4;2	n	0.00	0	6.5	0	4;9	n	ENSMUSG00000030177.15	Ccdc77	chr6	protein_coding	coiled-coil domain containing 77
novel_NIR_15599	chr6	120311878	120316096	-	120315121	120316096	3pMXE	ENSMUST00000123114.8	novel	0.25	2	6	2	6	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	ENSMUSG00000030177.15	Ccdc77	chr6	protein_coding	coiled-coil domain containing 77
novel_NIR_15600	chr6	120328682	120330962	-	120327351	120330962	A3SS	ENSMUST00000127146.8	novel	0.50	1	1	1	1	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000030177.15	Ccdc77	chr6	protein_coding	coiled-coil domain containing 77
novel_NIR_15601	chr6	120328682	120330962	-	120327405	120330962	A3SS	ENSMUST00000032283.12	novel	1.00	1	0	1	0	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000030177.15	Ccdc77	chr6	protein_coding	coiled-coil domain containing 77
novel_NIR_15602	chr6	120358630	120359882	+	120358630	120359878	A3SS	ENSMUST00000135802.8	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	0.17	2	10	2	10	y	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	ENSMUSG00000030180.16	Kdm5a	chr6	protein_coding	lysine (K)-specific demethylase 5A
novel_NIR_15603	chr6	120367796	120375899	+	120367796;120371210	120371048;120375899	ES	ENSMUST00000135802.8	novel	0.00	0	4.5	0	5;4	n	0.22	2	7.0	2	6;8	y	0.00	0	19.5	0	18;21	n	0.00	0	11.0	0	11;11	n	0.00	0	14.5	0	20;9	n	0.00	0	7.5	0	8;7	n	0.00	0	12.0	0	12;12	n	0.00	0	12.0	0	14;10	n	0.00	0	8.0	0	8;8	n	0.00	0	8.5	0	11;6	n	0.31	2	4.5	2	4;5	y	0.00	0	15.0	0	22;8	n	ENSMUSG00000030180.16	Kdm5a	chr6	protein_coding	lysine (K)-specific demethylase 5A
novel_NIR_15604	chr6	12044489	12047826	+	12044489;12047153	12047124;12047826	ES	ENSMUST00000214543.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.57	2	1.5	2	1;2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	0.5	0	0;1	n	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	0.89	4	0.5	4	0;1	y	1.00	1	0.0	1	0;0	n	ENSMUSG00000029629.18	Phf14	chr6	protein_coding	PHD finger protein 14
novel_NIR_15605	chr6	120710831	120711566	+	120710831	120711519	A3SS	ENSMUST00000112686.8	novel	0.00	0	7	0	7	n	0.14	1	6	1	6	n	0.00	0	11	0	11	n	0.00	0	18	0	18	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.33	3	6	3	6	y	0.00	0	7	0	7	n	0.09	1	10	1	10	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	ENSMUSG00000071226.12	Cecr2	chr6	protein_coding	CECR2, histone acetyl-lysine reader
novel_NIR_15606	chr6	120772725	120773359	-	120772725	120781013	A5SS	ENSMUST00000203783.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000019210.11	Atp6v1e1	chr6	protein_coding	ATPase, H+ transporting, lysosomal V1 subunit E1
novel_NIR_15607	chr6	120795360	120799413	-	120795360	120799228	A5SS	ENSMUST00000204699.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000019210.11	Atp6v1e1	chr6	protein_coding	ATPase, H+ transporting, lysosomal V1 subunit E1
novel_NIR_15608	chr6	120825512	120839816	+	120825577	120839816	A5SS	ENSMUST00000204004.2	novel	0.04	1	26	1	26	n	0.00	0	16	0	16	n	0.04	1	22	1	22	n	0.00	0	41	0	41	n	0.08	4	46	4	46	n	0.33	6	12	6	12	y	0.00	0	48	0	48	n	0.02	1	41	1	41	n	0.00	0	21	0	21	n	0.11	5	42	5	42	n	0.14	3	18	3	18	n	0.08	3	33	3	33	n	ENSMUSG00000009112.5	Bcl2l13	chr6	protein_coding	BCL2-like 13 (apoptosis facilitator)
novel_NIR_15609	chr6	120869522	120870200	-	120869518	120870200	A3SS	ENSMUST00000160684.8	novel	0.00	0	5	0	5	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000004446.13	Bid	chr6	protein_coding	BH3 interacting domain death agonist
novel_NIR_15610	chr6	120878749	120881983	-	120878749	120883390	A5SS	ENSMUST00000145948.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.50	2	2	2	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000004446.13	Bid	chr6	protein_coding	BH3 interacting domain death agonist
novel_NIR_15611	chr6	120878749	120893788	-	120878749	120893695	A5SS	ENSMUST00000160684.8	novel	0.09	4	39	4	39	n	0.00	0	22	0	22	n	0.00	0	19	0	19	n	0.09	2	20	2	20	n	0.00	0	37	0	37	n	0.00	0	15	0	15	n	0.17	3	15	3	15	y	0.00	0	16	0	16	n	0.11	2	17	2	17	n	0.00	0	47	0	47	n	0.06	2	30	2	30	n	0.00	0	39	0	39	n	ENSMUSG00000004446.13	Bid	chr6	protein_coding	BH3 interacting domain death agonist
novel_NIR_15612	chr6	120912234	120914517	-	120912234	120912467	5pMXE	ENSMUST00000140854.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000051586.18	Mical3	chr6	protein_coding	microtubule associated monooxygenase, calponin and LIM domain containing 3
novel_NIR_15613	chr6	120950605	120959493	-	120950608	120959493	A3SS	ENSMUST00000098457.9	novel	0.00	0	4	0	4	n	0.40	2	3	2	3	y	0.21	3	11	3	11	y	0.00	0	7	0	7	n	0.11	1	8	1	8	n	0.20	2	8	2	8	y	0.00	0	10	0	10	n	0.40	2	3	2	3	y	0.33	2	4	2	4	y	0.33	5	10	5	10	y	0.00	0	7	0	7	n	0.14	1	6	1	6	n	ENSMUSG00000051586.18	Mical3	chr6	protein_coding	microtubule associated monooxygenase, calponin and LIM domain containing 3
novel_NIR_15614	chr6	121019295	121084625	-	121019295	121058370	5pMXE	ENSMUST00000207889.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000051586.18	Mical3	chr6	protein_coding	microtubule associated monooxygenase, calponin and LIM domain containing 3
novel_NIR_15615	chr6	121019295	121084625	-	121019295	121080217	5pMXE	ENSMUST00000207968.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000051586.18	Mical3	chr6	protein_coding	microtubule associated monooxygenase, calponin and LIM domain containing 3
novel_NIR_15616	chr6	121019295	121084625	-	121019295	121081439	5pMXE	ENSMUST00000207993.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000051586.18	Mical3	chr6	protein_coding	microtubule associated monooxygenase, calponin and LIM domain containing 3
novel_NIR_15617	chr6	121019295	121084625	-	121019295	121086977	A5SS	ENSMUST00000204994.2	novel	0.17	1	5	1	5	n	0.00	0	1	0	1	n	0.27	3	8	3	8	y	0.00	0	7	0	7	n	0.12	1	7	1	7	n	0.00	0	12	0	12	n	0.00	0	17	0	17	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.15	2	11	2	11	y	ENSMUSG00000051586.18	Mical3	chr6	protein_coding	microtubule associated monooxygenase, calponin and LIM domain containing 3
novel_NIR_15618	chr6	121019295	121084625	-	121019295	121107730	A5SS	ENSMUST00000204248.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000051586.18	Mical3	chr6	protein_coding	microtubule associated monooxygenase, calponin and LIM domain containing 3
novel_NIR_15619	chr6	121084803	121086977	-	121019295	121086977	A3SS	ENSMUST00000204994.2	novel	0.29	2	5	2	5	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.30	3	7	3	7	n	0.20	3	12	3	12	y	0.00	0	17	0	17	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	11	0	11	n	ENSMUSG00000051586.18	Mical3	chr6	protein_coding	microtubule associated monooxygenase, calponin and LIM domain containing 3
novel_NIR_15620	chr6	121162809	121164233	+	121162809	121167060	A3SS	ENSMUST00000118234.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	ENSMUSG00000067825.12	Pex26	chr6	protein_coding	peroxisomal biogenesis factor 26
novel_NIR_15621	chr6	121167206	121170503	+	121167206	121170474	A3SS	ENSMUST00000120066.8	novel	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	14	0	14	n	0.21	3	11	3	11	y	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	19	0	19	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	ENSMUSG00000067825.12	Pex26	chr6	protein_coding	peroxisomal biogenesis factor 26
novel_NIR_15622	chr6	121170706	121172515	+	121170706	121174841	A3SS	ENSMUST00000125633.2	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	ENSMUSG00000067825.12	Pex26	chr6	protein_coding	peroxisomal biogenesis factor 26
novel_NIR_15623	chr6	121170706	121175587	+	121170706;121174973	121174841;121175587	ES	ENSMUST00000125633.2	novel	-	-	-	-	-	-	0.00	0	2.5	0	3;2	n	-	-	-	-	-	-	1.00	4	0.0	4	0;0	y	0.75	3	1.0	3	0;2	y	-	-	-	-	-	-	0.00	0	3.0	0	2;4	n	-	-	-	-	-	-	0.50	1	1.0	1	0;2	n	0.00	0	1.0	0	0;2	n	0.00	0	0.5	0	1;0	n	0.00	0	1.5	0	3;0	n	ENSMUSG00000067825.12	Pex26	chr6	protein_coding	peroxisomal biogenesis factor 26
novel_NIR_15624	chr6	121246082	121249514	-	121232346	121249514	A3SS	ENSMUST00000203718.2	novel	0.33	2	4	2	4	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	-	-	-	-	-	-	ENSMUSG00000107736.2	Gm44148	chr6	lncRNA	predicted gene, 44148
novel_NIR_15625	chr6	121249151	121249514	-	121232346	121249514	A3SS	ENSMUST00000203718.2	novel	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	ENSMUSG00000107736.2	Gm44148	chr6	lncRNA	predicted gene, 44148
novel_NIR_15626	chr6	121334011	121335611	+	121334011	121335981	A3SS	ENSMUST00000170582.8	novel	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.67	8	4	8	4	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.83	5	1	5	1	y	-	-	-	-	-	-	0.20	1	4	1	4	n	1.00	6	0	6	0	y	0.80	4	1	4	1	y	1.00	2	0	2	0	y	ENSMUSG00000030109.16	Slc6a12	chr6	protein_coding	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12
novel_NIR_15627	chr6	121336105	121337272	+	121336105	121338793	A3SS	ENSMUST00000163771.8	novel	1.00	1	0	1	0	n	1.00	7	0	7	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	ENSMUSG00000030109.16	Slc6a12	chr6	protein_coding	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12
novel_NIR_15628	chr6	121336105	121337915	+	121336105	121338793	A3SS	ENSMUST00000163771.8	novel	1.00	1	0	1	0	n	1.00	5	0	5	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000030109.16	Slc6a12	chr6	protein_coding	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12
novel_NIR_15629	chr6	121983903	121986241	+	121983903;121985448	121985265;121986241	ES	ENSMUST00000081777.8	novel	0.27	4	11.0	4	21;1	y	0.00	0	13.0	0	20;6	n	0.00	0	43.0	0	73;13	n	0.00	0	30.5	0	45;16	n	0.11	5	40.5	5	57;24	n	0.00	0	20.5	0	31;10	n	0.07	2	27.5	2	37;18	n	0.03	1	31.0	1	39;23	n	0.00	0	20.0	0	30;10	n	0.00	0	35.0	0	49;21	n	0.00	0	20.0	0	35;5	n	0.00	0	52.0	0	73;31	n	ENSMUSG00000030131.9	Mug2	chr6	protein_coding	murinoglobulin 2
novel_NIR_15630	chr6	122001994	122154520	+	122153158	122154520	5pMXE	ENSMUST00000190643.7	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	34	0	34	n	0.00	0	33	0	33	n	0.42	14	19	14	19	y	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	41	0	41	n	1.00	37	0	37	0	y	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	ENSMUSG00000101397.7	Mug-ps1	chr6	transcribed_unprocessed_pseudogene	murinoglobulin, pseudogene 1
novel_NIR_15631	chr6	122113776	122154520	+	122153158	122154520	5pMXE	ENSMUST00000190643.7	novel	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	34	0	34	n	0.00	0	33	0	33	n	0.05	1	19	1	19	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	41	0	41	n	1.00	2	0	2	0	y	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	ENSMUSG00000101397.7	Mug-ps1	chr6	transcribed_unprocessed_pseudogene	murinoglobulin, pseudogene 1
novel_NIR_15632	chr6	122126971	122184856	+	122126971	122127230	3pMXE	ENSMUST00000078431.12	novel	0.04	5	129	5	129	n	0.00	0	112	0	112	n	0.00	0	143	0	143	n	0.09	22	221	22	221	n	0.03	7	212	7	212	n	0.00	0	103	0	103	n	0.16	27	137	27	137	y	0.05	10	175	10	175	n	0.13	20	135	20	135	n	0.04	7	187	7	187	n	0.00	0	144	0	144	n	0.13	30	207	30	207	n	ENSMUSG00000071204.11	Gm10319	chr6	transcribed_unprocessed_pseudogene	predicted pseudogene 10319
novel_NIR_15633	chr6	122128975	122154520	+	122153158	122154520	5pMXE	ENSMUST00000190643.7	novel	1.00	40	0	40	0	y	0.89	17	2	17	2	y	0.51	36	34	36	34	y	0.61	51	33	51	33	y	0.00	0	19	0	19	n	0.92	24	2	24	2	y	0.80	24	6	24	6	y	0.20	10	41	10	41	y	-	-	-	-	-	-	0.85	45	8	45	8	y	0.96	24	1	24	1	y	0.81	29	7	29	7	y	ENSMUSG00000101397.7	Mug-ps1	chr6	transcribed_unprocessed_pseudogene	murinoglobulin, pseudogene 1
novel_NIR_15634	chr6	122153158	122155497	+	122153158;122154703	122154520;122155497	ES	ENSMUST00000190643.7	novel	0.00	0	3.0	0	0;6	n	0.00	0	2.0	0	2;2	n	0.00	0	20.5	0	34;7	n	0.00	0	22.5	0	33;12	n	0.00	0	24.0	0	19;29	n	0.00	0	2.0	0	2;2	n	0.11	1	8.0	1	6;10	n	0.00	0	26.0	0	41;11	n	0.00	0	4.5	0	0;9	n	0.33	7	14.0	7	8;20	y	0.00	0	4.0	0	1;7	n	0.42	7	9.5	7	7;12	y	ENSMUSG00000101397.7	Mug-ps1	chr6	transcribed_unprocessed_pseudogene	murinoglobulin, pseudogene 1
novel_NIR_15635	chr6	122155656;122169237	122169217;122184856	+	122155656;122170129	122155801;122184856	MXE	ENSMUST00000186891.7	novel	0.22	6.0	21.0	3;9	18;24	y	0.11	1.5	12.0	0;3	15;9	n	0.14	5.0	32.0	0;10	39;25	n	0.05	1.0	18.5	2;0	32;5	n	0.23	10.5	36.0	6;15	40;32	y	0.12	2.0	14.0	3;1	22;6	n	0.05	1.0	18.0	2;0	26;10	n	0.15	5.0	27.5	2;8	30;25	y	0.00	0.0	18.0	0;0	21;15	n	0.33	7.5	15.5	4;11	21;10	y	0.15	2.5	14.5	3;2	17;12	y	0.07	2.5	31.5	1;4	50;13	n	ENSMUSG00000101397.7	Mug-ps1	chr6	transcribed_unprocessed_pseudogene	murinoglobulin, pseudogene 1
novel_NIR_15636	chr6	122155853	122184856	+	122170129	122184856	A5SS&ES	ENSMUST00000186891.7	novel	0.00	0	24	0	24	n	0.00	0	9	0	9	n	0.00	0	25	0	25	n	0.64	9	5	9	5	y	0.20	8	32	8	32	y	0.33	3	6	3	6	y	0.33	5	10	5	10	y	0.00	0	25	0	25	n	0.00	0	15	0	15	n	0.29	4	10	4	10	y	0.14	2	12	2	12	n	0.00	0	13	0	13	n	ENSMUSG00000101397.7	Mug-ps1	chr6	transcribed_unprocessed_pseudogene	murinoglobulin, pseudogene 1
novel_NIR_15637	chr6	122169237	122184856	+	122169237	122169495	3pMXE	ENSMUST00000190643.7	novel	0.39	9	14	9	14	y	0.23	3	10	3	10	y	0.31	10	22	10	22	y	0.00	0	28	0	28	n	0.28	15	38	15	38	y	0.05	1	21	1	21	n	0.00	0	23	0	23	n	0.24	8	25	8	25	y	0.00	0	18	0	18	n	0.31	11	25	11	25	y	0.09	2	21	2	21	n	0.10	4	38	4	38	n	ENSMUSG00000101397.7	Mug-ps1	chr6	transcribed_unprocessed_pseudogene	murinoglobulin, pseudogene 1
novel_NIR_15638	chr6	122169237	122184856	+	122170129	122184856	A5SS&ES	ENSMUST00000186891.7	novel	0.27	9	24	9	24	n	0.25	3	9	3	9	y	0.29	10	25	10	25	y	0.00	0	5	0	5	n	0.32	15	32	15	32	n	0.14	1	6	1	6	n	0.00	0	10	0	10	n	0.24	8	25	8	25	n	0.00	0	15	0	15	n	0.52	11	10	11	10	n	0.14	2	12	2	12	n	0.24	4	13	4	13	n	ENSMUSG00000101397.7	Mug-ps1	chr6	transcribed_unprocessed_pseudogene	murinoglobulin, pseudogene 1
novel_NIR_15639	chr6	122169663	122184856	+	122169663;122170129	122170045;122184856	ES	ENSMUST00000186891.7	novel	0.24	6	19.0	6	14;24	y	0.00	0	9.0	0	9;9	n	0.05	1	20.0	1	15;25	n	0.00	0	12.0	0	19;5	n	0.00	0	29.0	0	26;32	n	0.00	0	8.5	0	11;6	n	0.00	0	11.5	0	13;10	n	0.00	0	24.0	0	23;25	n	0.00	0	12.5	0	10;15	n	0.00	0	17.5	0	25;10	n	0.00	0	12.5	0	13;12	n	0.00	0	19.5	0	26;13	n	ENSMUSG00000101397.7	Mug-ps1	chr6	transcribed_unprocessed_pseudogene	murinoglobulin, pseudogene 1
novel_NIR_15640	chr6	122170129	122184860	+	122170129	122184856	A3SS	ENSMUST00000186891.7	novel	0.00	0	24	0	24	n	0.00	0	9	0	9	n	0.00	0	25	0	25	n	0.00	0	5	0	5	n	0.00	0	32	0	32	n	0.00	0	6	0	6	n	0.17	2	10	2	10	y	0.00	0	25	0	25	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.00	0	13	0	13	n	ENSMUSG00000101397.7	Mug-ps1	chr6	transcribed_unprocessed_pseudogene	murinoglobulin, pseudogene 1
novel_NIR_15641	chr6	122185228	122185914	+	122185233	122185914	A5SS	ENSMUST00000186891.7	novel	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	5	0	5	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	5	0	5	0	y	ENSMUSG00000101397.7	Mug-ps1	chr6	transcribed_unprocessed_pseudogene	murinoglobulin, pseudogene 1
novel_NIR_15642	chr6	122185233	122185869	+	122185233	122185914	A3SS	ENSMUST00000186891.7	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000101397.7	Mug-ps1	chr6	transcribed_unprocessed_pseudogene	murinoglobulin, pseudogene 1
novel_NIR_15643	chr6	122186065	122195129	+	122186069	122195129	A5SS	ENSMUST00000186891.7	novel	1.00	36	0	36	0	y	-	-	-	-	-	-	1.00	68	0	68	0	y	-	-	-	-	-	-	1.00	63	0	63	0	y	1.00	45	0	45	0	y	1.00	68	0	68	0	y	1.00	64	0	64	0	y	0.00	0	16	0	16	n	1.00	81	0	81	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000101397.7	Mug-ps1	chr6	transcribed_unprocessed_pseudogene	murinoglobulin, pseudogene 1
novel_NIR_15644	chr6	122195675	122206272	+	122195675;122197968	122197820;122206272	ES	ENSMUST00000186891.7	novel	0.25	16	48.5	16	40;57	y	0.18	7	32.0	7	28;36	y	0.06	4	58.5	4	64;53	n	0.20	12	49.5	12	51;48	y	0.18	12	54.5	12	48;61	y	0.21	8	30.0	8	35;25	y	0.20	13	52.0	13	56;48	y	0.18	11	49.5	11	57;42	y	0.18	10	47.0	10	51;43	y	0.11	7	59.5	7	57;62	n	0.15	6	35.0	6	24;46	y	0.17	14	68.5	14	72;65	y	ENSMUSG00000101397.7	Mug-ps1	chr6	transcribed_unprocessed_pseudogene	murinoglobulin, pseudogene 1
novel_NIR_15645	chr6	122208443	122210653	+	122208443;122209900	122209726;122210653	ES	ENSMUST00000189975.2	novel	0.60	164	108.5	164	106;111	y	0.50	101	99.5	101	90;109	y	0.37	106	182.5	106	196;169	y	0.60	143	95.0	143	89;101	y	0.57	182	138.5	182	150;127	y	0.50	63	63.0	63	62;64	y	0.59	115	81.5	115	66;97	y	0.53	101	88.0	101	83;93	y	0.55	145	117.5	145	113;122	y	0.57	167	126.5	167	129;124	y	0.58	131	94.0	131	101;87	y	0.60	214	145.0	214	141;149	y	ENSMUSG00000101397.7	Mug-ps1	chr6	transcribed_unprocessed_pseudogene	murinoglobulin, pseudogene 1
novel_NIR_15646	chr6	122208443;122210472	122210380;122210653	+	122208443;122209900	122209726;122210653	MXE	ENSMUST00000189975.2	novel	0.16	21.0	108.5	18;24	106;111	y	0.14	16.5	99.5	11;22	90;109	n	0.11	22.5	182.5	11;34	196;169	n	0.20	23.5	95.0	19;28	89;101	y	0.13	20.5	138.5	7;34	150;127	n	0.14	10.5	63.0	9;12	62;64	n	0.19	19.0	81.5	13;25	66;97	y	0.16	16.5	88.0	11;22	83;93	y	0.11	15.0	117.5	9;21	113;122	n	0.15	21.5	126.5	10;33	129;124	y	0.14	15.0	94.0	15;15	101;87	n	0.15	26.0	145.0	16;36	141;149	y	ENSMUSG00000101397.7	Mug-ps1	chr6	transcribed_unprocessed_pseudogene	murinoglobulin, pseudogene 1
novel_NIR_15647	chr6	122209900;122210472	122210380;122210653	+	122209900	122210653	cassetteExon	ENSMUST00000189975.2	novel	0.17	23.5	111	23;24	111	y	0.15	18.5	109	15;22	109	y	0.13	26.0	169	18;34	169	n	0.20	24.5	101	21;28	101	y	0.19	30.0	127	26;34	127	y	0.15	11.0	64	10;12	64	y	0.14	15.5	97	6;25	97	n	0.16	17.5	93	13;22	93	y	0.12	16.5	122	12;21	122	n	0.16	23.5	124	14;33	124	y	0.09	9.0	87	3;15	87	n	0.17	30.5	149	25;36	149	y	ENSMUSG00000101397.7	Mug-ps1	chr6	transcribed_unprocessed_pseudogene	murinoglobulin, pseudogene 1
novel_NIR_15648	chr6	122215168	122215400	+	122215168	122216926	A3SS	ENSMUST00000186891.7	novel	0.13	18	125	18	125	n	0.00	0	95	0	95	n	0.18	29	129	29	129	n	0.00	0	106	0	106	n	0.10	14	126	14	126	n	0.00	0	73	0	73	n	0.10	14	125	14	125	n	0.02	2	90	2	90	n	0.00	0	128	0	128	n	0.17	27	132	27	132	y	0.00	0	136	0	136	n	0.05	8	161	8	161	n	ENSMUSG00000101397.7	Mug-ps1	chr6	transcribed_unprocessed_pseudogene	murinoglobulin, pseudogene 1
novel_NIR_15649	chr6	122220933	122221029	+	122220933	122221094	A3SS	ENSMUST00000186891.7	novel	0.05	14	251	14	251	n	0.08	19	226	19	226	n	0.16	47	248	47	248	y	0.09	20	203	20	203	n	0.09	30	319	30	319	n	0.12	19	137	19	137	n	0.09	21	226	21	226	n	0.10	20	188	20	188	n	0.06	17	257	17	257	n	0.09	30	320	30	320	n	0.12	39	291	39	291	n	0.11	41	340	41	340	n	ENSMUSG00000101397.7	Mug-ps1	chr6	transcribed_unprocessed_pseudogene	murinoglobulin, pseudogene 1
novel_NIR_15650	chr6	122225065	122226781	+	122225065	122225381	3pMXE	ENSMUST00000189975.2	novel	0.36	81	145	81	145	y	0.19	46	198	46	198	y	0.14	42	248	42	248	n	0.31	55	125	55	125	y	0.23	65	219	65	219	y	0.21	26	100	26	100	y	0.18	36	169	36	169	y	0.15	22	121	22	121	y	0.28	55	140	55	140	y	0.28	86	222	86	222	y	0.29	78	194	78	194	y	0.17	47	225	47	225	y	ENSMUSG00000101397.7	Mug-ps1	chr6	transcribed_unprocessed_pseudogene	murinoglobulin, pseudogene 1
novel_NIR_15651	chr6	122564012	122565104	-	122558709	122565104	A3SS	ENSMUST00000112586.8	novel	0.00	0	14	0	14	n	0.10	1	9	1	9	n	0.00	0	42	0	42	n	0.12	2	15	2	15	n	0.09	3	31	3	31	n	0.25	4	12	4	12	y	0.00	0	19	0	19	n	0.00	0	13	0	13	n	0.00	0	17	0	17	n	0.19	3	13	3	13	y	0.00	0	21	0	21	n	0.09	3	29	3	29	n	ENSMUSG00000040613.15	Apobec1	chr6	protein_coding	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1
novel_NIR_15652	chr6	122564012	122565104	-	122564312	122565104	3pMXE	ENSMUST00000147760.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	36	0	36	n	1.00	2	0	2	0	y	0.50	3	3	3	3	y	0.40	4	6	4	6	y	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.60	3	2	3	2	y	0.00	0	6	0	6	n	0.33	3	6	3	6	y	ENSMUSG00000040613.15	Apobec1	chr6	protein_coding	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1
novel_NIR_15653	chr6	122564651	122565104	-	122564312	122565104	A3SS	ENSMUST00000147760.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	36	0	36	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.25	2	6	2	6	y	ENSMUSG00000040613.15	Apobec1	chr6	protein_coding	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1
novel_NIR_15654	chr6	122564658	122565104	-	122558709	122565104	A3SS	ENSMUST00000112586.8	novel	0.00	0	14	0	14	n	0.71	22	9	22	9	y	0.51	43	42	43	42	y	0.66	29	15	29	15	y	0.49	30	31	30	31	y	0.50	12	12	12	12	y	0.49	18	19	18	19	y	0.00	0	13	0	13	n	0.59	24	17	24	17	y	0.66	25	13	25	13	y	0.50	21	21	21	21	y	0.34	15	29	15	29	y	ENSMUSG00000040613.15	Apobec1	chr6	protein_coding	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1
novel_NIR_15655	chr6	122564658	122565104	-	122564312	122565104	A3SS	ENSMUST00000147760.8	novel	-	-	-	-	-	-	1.00	22	0	22	0	y	0.54	43	36	43	36	y	1.00	29	0	29	0	y	0.91	30	3	30	3	y	0.67	12	6	12	6	y	0.78	18	5	18	5	y	0.00	0	4	0	4	n	0.86	24	4	24	4	y	0.93	25	2	25	2	y	0.78	21	6	21	6	y	0.71	15	6	15	6	y	ENSMUSG00000040613.15	Apobec1	chr6	protein_coding	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1
novel_NIR_15656	chr6	122564677	122565104	-	122558709	122565104	A3SS	ENSMUST00000112586.8	novel	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.29	17	42	17	42	y	0.00	0	15	0	15	n	0.03	1	31	1	31	n	0.40	8	12	8	12	y	0.24	6	19	6	19	y	0.38	8	13	8	13	y	0.37	10	17	10	17	y	0.13	2	13	2	13	n	0.36	12	21	12	21	y	0.12	4	29	4	29	n	ENSMUSG00000040613.15	Apobec1	chr6	protein_coding	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1
novel_NIR_15657	chr6	122564677	122565104	-	122564312	122565104	A3SS	ENSMUST00000147760.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.32	17	36	17	36	y	-	-	-	-	-	-	0.25	1	3	1	3	n	0.57	8	6	8	6	y	0.55	6	5	6	5	y	0.67	8	4	8	4	y	0.71	10	4	10	4	y	0.50	2	2	2	2	y	0.67	12	6	12	6	y	0.40	4	6	4	6	y	ENSMUSG00000040613.15	Apobec1	chr6	protein_coding	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1
novel_NIR_15658	chr6	122573770	122577017	-	122568163	122577017	A3SS	ENSMUST00000203309.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000040613.15	Apobec1	chr6	protein_coding	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1
novel_NIR_15659	chr6	123116367	123117661	+	123116367	123117615	A3SS	ENSMUST00000161365.8	novel	0.00	0	11	0	11	n	0.00	0	21	0	21	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	28	0	28	n	0.00	0	5	0	5	n	0.00	0	14	0	14	n	1.00	2	0	2	0	y	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.00	0	15	0	15	n	0.00	0	7	0	7	n	ENSMUSG00000030148.16	Clec4a2	chr6	protein_coding	C-type lectin domain family 4, member a2
novel_NIR_15660	chr6	123116367	123119322	+	123116367;123117727	123117615;123119322	ES	ENSMUST00000161365.8	novel	0.20	3	12.0	3	11;13	y	0.00	0	22.0	0	21;23	n	0.15	1	5.5	1	7;4	n	0.24	2	6.5	2	7;6	y	0.04	1	24.5	1	28;21	n	0.22	2	7.0	2	5;9	y	0.00	0	16.5	0	14;19	n	0.00	0	3.5	0	0;7	n	0.08	1	12.0	1	16;8	n	0.00	0	8.5	0	8;9	n	0.08	1	11.5	1	15;8	n	0.00	0	6.5	0	7;6	n	ENSMUSG00000030148.16	Clec4a2	chr6	protein_coding	C-type lectin domain family 4, member a2
novel_NIR_15661	chr6	124390650	124390966	-	124390749	124390966	A3SS	ENSMUST00000150899.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.29	2	5	2	5	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000005069.13	Pex5	chr6	protein_coding	peroxisomal biogenesis factor 5
novel_NIR_15662	chr6	124391409	124392791	-	124391409	124391726	5pMXE	ENSMUST00000112531.8	novel	1.00	5	0	5	0	y	1.00	1	0	1	0	n	0.80	4	1	4	1	y	1.00	4	0	4	0	y	0.50	2	2	2	2	y	-	-	-	-	-	-	0.67	6	3	6	3	y	0.00	0	2	0	2	n	1.00	7	0	7	0	y	0.75	6	2	6	2	y	1.00	4	0	4	0	y	0.64	7	4	7	4	y	ENSMUSG00000005069.13	Pex5	chr6	protein_coding	peroxisomal biogenesis factor 5
novel_NIR_15663	chr6	124391409	124392791	-	124391409	124391969	5pMXE	ENSMUST00000112532.8	novel	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	1.00	6	0	6	0	y	1.00	4	0	4	0	y	1.00	7	0	7	0	y	ENSMUSG00000005069.13	Pex5	chr6	protein_coding	peroxisomal biogenesis factor 5
novel_NIR_15664	chr6	124409119	124409642	-	124409119	124410367	A5SS	ENSMUST00000124998.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	25	0	25	n	0.25	2	6	2	6	y	0.00	0	1	0	1	n	ENSMUSG00000008153.13	Clstn3	chr6	protein_coding	calsyntenin 3
novel_NIR_15665	chr6	124409119	124409642	-	124409119	124413777	A5SS	ENSMUST00000112523.8	novel	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.11	1	8	1	8	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.09	1	10	1	10	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.17	2	10	2	10	y	0.00	0	10	0	10	n	ENSMUSG00000008153.13	Clstn3	chr6	protein_coding	calsyntenin 3
novel_NIR_15666	chr6	124409119	124410558	-	124409119	124409646	5pMXE	ENSMUST00000238807.2	novel	0.36	4	7	4	7	y	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	21	0	21	n	0.00	0	9	0	9	n	0.33	2	4	2	4	y	0.07	1	14	1	14	n	0.00	0	2	0	2	n	0.20	3	12	3	12	y	0.34	19	37	19	37	y	0.19	5	21	5	21	y	0.00	0	3	0	3	n	ENSMUSG00000008153.13	Clstn3	chr6	protein_coding	calsyntenin 3
novel_NIR_15667	chr6	124409119	124410558	-	124409119	124410367	5pMXE	ENSMUST00000124998.2	novel	1.00	4	0	4	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.60	3	2	3	2	y	0.43	19	25	19	25	y	0.45	5	6	5	6	y	0.00	0	1	0	1	n	ENSMUSG00000008153.13	Clstn3	chr6	protein_coding	calsyntenin 3
novel_NIR_15668	chr6	124409119	124410558	-	124409119	124413777	A5SS	ENSMUST00000112523.8	novel	0.31	4	9	4	9	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.40	2	3	2	3	y	0.09	1	10	1	10	n	0.00	0	1	0	1	n	0.25	3	9	3	9	y	0.68	19	9	19	9	y	0.33	5	10	5	10	y	0.00	0	10	0	10	n	ENSMUSG00000008153.13	Clstn3	chr6	protein_coding	calsyntenin 3
novel_NIR_15669	chr6	124409884	124410558	-	124409884	124410367	5pMXE	ENSMUST00000239139.2	novel	0.00	0	3	0	3	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000008153.13	Clstn3	chr6	protein_coding	calsyntenin 3
novel_NIR_15670	chr6	124426890	124427654	-	124426890	124427665	A5SS	ENSMUST00000112523.8	novel	0.20	2	8	2	8	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	26	0	26	n	0.00	0	11	0	11	n	0.25	2	6	2	6	y	ENSMUSG00000008153.13	Clstn3	chr6	protein_coding	calsyntenin 3
novel_NIR_15671	chr6	124428427	124429327	-	124428427	124433836	A5SS	ENSMUST00000112523.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000008153.13	Clstn3	chr6	protein_coding	calsyntenin 3
novel_NIR_15672	chr6	124428427	124430702	-	124428427	124433836	A5SS	ENSMUST00000112523.8	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	7	0	7	0	y	1.00	9	0	9	0	y	1.00	10	0	10	0	y	1.00	10	0	10	0	y	ENSMUSG00000008153.13	Clstn3	chr6	protein_coding	calsyntenin 3
novel_NIR_15673	chr6	124469489	124470750	-	124469489	124471192	A5SS	ENSMUST00000203171.2	novel	1.00	23	0	23	0	y	1.00	14	0	14	0	y	1.00	19	0	19	0	y	1.00	17	0	17	0	y	1.00	27	0	27	0	y	1.00	9	0	9	0	y	1.00	34	0	34	0	n	1.00	23	0	23	0	y	1.00	20	0	20	0	y	1.00	39	0	39	0	y	1.00	26	0	26	0	y	1.00	37	0	37	0	y	ENSMUSG00000107552.2	Gm44096	chr6	lncRNA	predicted gene, 44096
novel_NIR_15674	chr6	124682801	124688839	-	124682619	124688839	A3SS	ENSMUST00000203238.2	novel	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000004268.12	Emg1	chr6	protein_coding	EMG1 N1-specific pseudouridine methyltransferase
novel_NIR_15675	chr6	124692993	124693354	+	124692993	124693569	A3SS	ENSMUST00000143000.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000004264.18	Phb2	chr6	protein_coding	prohibitin 2
novel_NIR_15676	chr6	124724931	124726199	-	124724952	124726199	A3SS	ENSMUST00000129411.7	novel	0.00	0	17	0	17	n	0.08	1	11	1	11	n	0.05	1	20	1	20	n	0.04	1	23	1	23	n	0.00	0	26	0	26	n	0.00	0	10	0	10	n	0.03	1	32	1	32	n	0.00	0	9	0	9	n	0.22	2	7	2	7	y	0.00	0	14	0	14	n	0.08	1	12	1	12	n	0.08	2	22	2	22	n	ENSMUSG00000107478.2	Gm45234	chr6	protein_coding	predicted gene 45234
novel_NIR_15677	chr6	124724949	124726199	-	124724952	124726199	A3SS	ENSMUST00000129411.7	novel	0.26	6	17	6	17	y	0.21	3	11	3	11	y	0.38	12	20	12	20	y	0.23	7	23	7	23	y	0.19	6	26	6	26	y	0.00	0	10	0	10	n	0.11	4	32	4	32	n	0.36	5	9	5	9	y	0.46	6	7	6	7	y	0.36	8	14	8	14	y	0.25	4	12	4	12	y	0.27	8	22	8	22	y	ENSMUSG00000107478.2	Gm45234	chr6	protein_coding	predicted gene 45234
novel_NIR_15678	chr6	124785758	124786190	+	124785742	124786190	A5SS	ENSMUST00000047760.10	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.29	2	5	2	5	y	0.50	1	1	1	1	n	0.00	0	4	0	4	n	ENSMUSG00000038451.14	Spsb2	chr6	protein_coding	splA/ryanodine receptor domain and SOCS box containing 2
novel_NIR_15679	chr6	124785758	124786190	+	124785918	124786190	5pMXE	ENSMUST00000143040.8	novel	0.00	0	5	0	5	n	0.20	2	8	2	8	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.11	1	8	1	8	n	0.00	0	4	0	4	n	ENSMUSG00000038451.14	Spsb2	chr6	protein_coding	splA/ryanodine receptor domain and SOCS box containing 2
novel_NIR_15680	chr6	124785758	124786190	+	124785945	124786190	5pMXE	ENSMUST00000130160.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	2	4	2	4	y	0.20	1	4	1	4	n	-	-	-	-	-	-	ENSMUSG00000038451.14	Spsb2	chr6	protein_coding	splA/ryanodine receptor domain and SOCS box containing 2
novel_NIR_15681	chr6	124803387	124805813	-	124803387;124805102	124804978;124805813	ES	ENSMUST00000153306.2	novel	0.00	0	3.5	0	6;1	n	0.00	0	0.5	0	1;0	n	0.00	0	2.0	0	4;0	n	0.00	0	3.0	0	6;0	n	0.00	0	1.5	0	3;0	n	-	-	-	-	-	-	0.00	0	2.5	0	4;1	n	0.25	1	3.0	1	5;1	n	0.00	0	4.0	0	8;0	n	0.50	3	3.0	3	6;0	y	0.00	0	7.0	0	14;0	n	0.00	0	4.5	0	9;0	n	ENSMUSG00000038429.11	Usp5	chr6	protein_coding	ubiquitin specific peptidase 5 (isopeptidase T)
novel_NIR_15682	chr6	124831353	124831811	-	124831410	124831811	A3SS	ENSMUST00000023958.10	novel	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.29	2	5	2	5	y	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000023191.10	P3h3	chr6	protein_coding	prolyl 3-hydroxylase 3
novel_NIR_15683	chr6	124831353	124831811	-	124831415	124831811	A3SS	ENSMUST00000135127.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023191.10	P3h3	chr6	protein_coding	prolyl 3-hydroxylase 3
novel_NIR_15684	chr6	124891420	124891598	-	124891195	124891598	A3SS	ENSMUST00000203422.2	novel	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	6	3	6	3	y	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000030122.13	Ptms	chr6	protein_coding	parathymosin
novel_NIR_15685	chr6	124891451	124891598	-	124891195	124891598	A3SS	ENSMUST00000203422.2	novel	0.84	21	4	21	4	y	0.50	5	5	5	5	y	0.78	7	2	7	2	y	0.71	17	7	17	7	y	0.88	15	2	15	2	y	1.00	1	0	1	0	n	0.85	17	3	17	3	y	0.33	3	6	3	6	y	0.67	10	5	10	5	y	0.89	25	3	25	3	y	0.96	25	1	25	1	y	0.90	27	3	27	3	y	ENSMUSG00000030122.13	Ptms	chr6	protein_coding	parathymosin
novel_NIR_15686	chr6	124891952	124892435	-	124891952	124892323	A5SS	ENSMUST00000134916.2	novel	0.40	2	3	2	3	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.60	3	2	3	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.50	3	3	3	3	y	-	-	-	-	-	-	0.38	3	5	3	5	y	ENSMUSG00000030122.13	Ptms	chr6	protein_coding	parathymosin
novel_NIR_15687	chr6	124891952	124892435	-	124891952	124897002	A5SS	ENSMUST00000204671.3	novel	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.40	2	3	2	3	y	0.75	3	1	3	1	y	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.50	3	3	3	3	y	ENSMUSG00000030122.13	Ptms	chr6	protein_coding	parathymosin
novel_NIR_15688	chr6	124891952	124892507	-	124891952	124892323	5pMXE	ENSMUST00000134916.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	1.00	3	0	3	0	y	0.00	0	5	0	5	n	ENSMUSG00000030122.13	Ptms	chr6	protein_coding	parathymosin
novel_NIR_15689	chr6	124891952	124892507	-	124891952	124897002	A5SS	ENSMUST00000204671.3	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.60	3	2	3	2	y	0.00	0	3	0	3	n	ENSMUSG00000030122.13	Ptms	chr6	protein_coding	parathymosin
novel_NIR_15690	chr6	124891952	124892962	-	124891952	124892323	5pMXE	ENSMUST00000134916.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000030122.13	Ptms	chr6	protein_coding	parathymosin
novel_NIR_15691	chr6	124891952	124892962	-	124891952	124897002	A5SS	ENSMUST00000204671.3	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	3	3	3	3	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000030122.13	Ptms	chr6	protein_coding	parathymosin
novel_NIR_15692	chr6	124891952	124893032	-	124891952	124892323	5pMXE	ENSMUST00000134916.2	novel	0.00	0	3	0	3	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.60	3	2	3	2	y	-	-	-	-	-	-	0.20	1	4	1	4	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.38	3	5	3	5	y	ENSMUSG00000030122.13	Ptms	chr6	protein_coding	parathymosin
novel_NIR_15693	chr6	124891952	124893032	-	124891952	124897002	A5SS	ENSMUST00000204671.3	novel	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.43	3	4	3	4	y	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.50	3	3	3	3	y	ENSMUSG00000030122.13	Ptms	chr6	protein_coding	parathymosin
novel_NIR_15694	chr6	124891952	124893350	-	124891952	124892323	5pMXE	ENSMUST00000134916.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.20	1	4	1	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000030122.13	Ptms	chr6	protein_coding	parathymosin
novel_NIR_15695	chr6	124891952	124893350	-	124891952	124897002	A5SS	ENSMUST00000204671.3	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000030122.13	Ptms	chr6	protein_coding	parathymosin
novel_NIR_15696	chr6	124891952	124894169	-	124891952	124892323	5pMXE	ENSMUST00000134916.2	novel	0.25	1	3	1	3	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.62	5	3	5	3	y	1.00	2	0	2	0	y	0.38	3	5	3	5	y	ENSMUSG00000030122.13	Ptms	chr6	protein_coding	parathymosin
novel_NIR_15697	chr6	124891952	124894169	-	124891952	124897002	A5SS	ENSMUST00000204671.3	novel	0.33	1	2	1	2	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	5	0	5	0	y	0.50	2	2	2	2	y	0.50	3	3	3	3	y	ENSMUSG00000030122.13	Ptms	chr6	protein_coding	parathymosin
novel_NIR_15698	chr6	124891952	124902981	-	124891952	124892323	5pMXE	ENSMUST00000134916.2	novel	0.79	11	3	11	3	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	4	0	4	0	y	0.67	4	2	4	2	y	-	-	-	-	-	-	0.86	12	2	12	2	y	1.00	1	0	1	0	n	0.69	9	4	9	4	y	0.77	10	3	10	3	y	1.00	5	0	5	0	y	0.67	10	5	10	5	y	ENSMUSG00000030122.13	Ptms	chr6	protein_coding	parathymosin
novel_NIR_15699	chr6	124891952	124902981	-	124891952	124897002	5pMXE	ENSMUST00000204671.3	novel	0.85	11	2	11	2	y	-	-	-	-	-	-	1.00	4	0	4	0	y	0.57	4	3	4	3	y	0.80	4	1	4	1	y	-	-	-	-	-	-	0.75	12	4	12	4	y	1.00	1	0	1	0	n	0.82	9	2	9	2	y	1.00	10	0	10	0	y	0.71	5	2	5	2	y	0.77	10	3	10	3	y	ENSMUSG00000030122.13	Ptms	chr6	protein_coding	parathymosin
novel_NIR_15700	chr6	124941891	124942115	-	124941891	124942124	A5SS	ENSMUST00000148485.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	ENSMUSG00000030127.16	Cops7a	chr6	protein_coding	COP9 signalosome subunit 7A
novel_NIR_15701	chr6	124941891	124942115	-	124941891	124942182	A5SS	ENSMUST00000129976.8	novel	0.25	1	3	1	3	n	0.33	1	2	1	2	n	0.50	1	1	1	1	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	1.00	3	0	3	0	y	0.62	5	3	5	3	y	0.00	0	2	0	2	n	0.60	3	2	3	2	y	0.50	1	1	1	1	n	ENSMUSG00000030127.16	Cops7a	chr6	protein_coding	COP9 signalosome subunit 7A
novel_NIR_15702	chr6	124941891	124942115	-	124941891	124942248	A5SS	ENSMUST00000032220.15	novel	0.33	1	2	1	2	n	0.25	1	3	1	3	n	0.10	1	9	1	9	n	0.12	1	7	1	7	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.17	2	10	2	10	y	0.38	3	5	3	5	y	0.56	5	4	5	4	y	0.00	0	11	0	11	n	0.23	3	10	3	10	y	0.10	1	9	1	9	n	ENSMUSG00000030127.16	Cops7a	chr6	protein_coding	COP9 signalosome subunit 7A
novel_NIR_15703	chr6	124941891	124942115	-	124941891	124942337	A5SS	ENSMUST00000129446.8	novel	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.25	1	3	1	3	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.75	3	1	3	1	y	1.00	5	0	5	0	y	-	-	-	-	-	-	0.75	3	1	3	1	y	1.00	1	0	1	0	n	ENSMUSG00000030127.16	Cops7a	chr6	protein_coding	COP9 signalosome subunit 7A
novel_NIR_15704	chr6	124987403	125000646	+	124987403	125000642	A3SS	ENSMUST00000132863.8	novel	0.00	0	26	0	26	n	0.00	0	28	0	28	n	0.00	0	28	0	28	n	0.08	2	23	2	23	n	0.11	5	41	5	41	n	0.04	1	23	1	23	n	0.00	0	33	0	33	n	0.00	0	21	0	21	n	0.00	0	28	0	28	n	0.16	7	38	7	38	y	0.00	0	20	0	20	n	0.00	0	30	0	30	n	ENSMUSG00000038346.19	Zfp384	chr6	protein_coding	zinc finger protein 384
novel_NIR_15705	chr6	125001233	125001359	+	125001233	125001377	A3SS	ENSMUST00000131555.8	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.22	2	7	2	7	y	0.00	0	5	0	5	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000038346.19	Zfp384	chr6	protein_coding	zinc finger protein 384
novel_NIR_15706	chr6	125001233	125001359	+	125001233	125001709	A3SS	ENSMUST00000112424.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	6	0	6	n	ENSMUSG00000038346.19	Zfp384	chr6	protein_coding	zinc finger protein 384
novel_NIR_15707	chr6	125001233	125001359	+	125001233	125001805	A3SS	ENSMUST00000152752.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038346.19	Zfp384	chr6	protein_coding	zinc finger protein 384
novel_NIR_15708	chr6	125001233	125001359	+	125001233	125001826	A3SS	ENSMUST00000054553.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038346.19	Zfp384	chr6	protein_coding	zinc finger protein 384
novel_NIR_15709	chr6	125001233	125001411	+	125001233	125001377	A3SS	ENSMUST00000131555.8	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000038346.19	Zfp384	chr6	protein_coding	zinc finger protein 384
novel_NIR_15710	chr6	125001233	125001411	+	125001233	125001709	A3SS	ENSMUST00000112424.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	6	0	6	n	ENSMUSG00000038346.19	Zfp384	chr6	protein_coding	zinc finger protein 384
novel_NIR_15711	chr6	125001233	125001411	+	125001233	125001805	A3SS	ENSMUST00000152752.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038346.19	Zfp384	chr6	protein_coding	zinc finger protein 384
novel_NIR_15712	chr6	125001233	125001411	+	125001233	125001826	A3SS	ENSMUST00000054553.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038346.19	Zfp384	chr6	protein_coding	zinc finger protein 384
novel_NIR_15713	chr6	125002045	125003220	+	125002045;125002903	125002811;125003220	ES	ENSMUST00000145566.2	novel	0.00	0	22.0	0	41;3	n	0.17	3	14.5	3	28;1	y	0.00	0	17.5	0	33;2	n	0.00	0	14.0	0	25;3	n	0.06	1	17.0	1	33;1	n	0.06	1	16.5	1	32;1	n	0.11	2	16.0	2	24;8	n	0.00	0	14.5	0	24;5	n	0.00	0	13.5	0	27;0	n	0.00	0	12.0	0	21;3	n	0.00	0	9.0	0	15;3	n	0.00	0	9.0	0	17;1	n	ENSMUSG00000038346.19	Zfp384	chr6	protein_coding	zinc finger protein 384
novel_NIR_15714	chr6	125024279	125024442	+	125024288	125024442	A5SS	ENSMUST00000140131.8	novel	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.50	4	4	4	4	y	0.00	0	6	0	6	n	0.07	1	13	1	13	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.25	1	3	1	3	n	ENSMUSG00000030330.16	Ing4	chr6	protein_coding	inhibitor of growth family, member 4
novel_NIR_15715	chr6	125024550	125024759	+	125024550	125024865	A3SS	ENSMUST00000112417.9	novel	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.33	2	4	2	4	y	0.25	1	3	1	3	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.15	2	11	2	11	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.20	2	8	2	8	y	0.14	1	6	1	6	n	0.25	1	3	1	3	n	ENSMUSG00000030330.16	Ing4	chr6	protein_coding	inhibitor of growth family, member 4
novel_NIR_15716	chr6	125037278	125037773	+	125031768	125037773	A5SS	ENSMUST00000088294.12	novel	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000072770.10	Acrbp	chr6	protein_coding	proacrosin binding protein
novel_NIR_15717	chr6	125039265	125039399	+	125038216	125039399	A5SS	ENSMUST00000088294.12	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000072770.10	Acrbp	chr6	protein_coding	proacrosin binding protein
novel_NIR_15718	chr6	125091429	125097171	+	125091429	125097168	A3SS	ENSMUST00000112392.8	novel	0.00	0	84	0	84	n	0.11	6	47	6	47	n	0.17	27	136	27	136	y	0.08	8	91	8	91	n	0.12	17	121	17	121	n	0.07	6	74	6	74	n	0.10	10	86	10	86	n	0.14	12	71	12	71	n	0.18	11	49	11	49	y	0.07	6	85	6	85	n	0.10	6	56	6	56	n	0.07	8	105	8	105	n	ENSMUSG00000063870.13	Chd4	chr6	protein_coding	chromodomain helicase DNA binding protein 4
novel_NIR_15719	chr6	125122992	125125588	+	125122992	125126552	A3SS	ENSMUST00000119527.8	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.18	2	9	2	9	y	0.00	0	5	0	5	n	0.08	1	11	1	11	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	ENSMUSG00000038271.18	Iffo1	chr6	protein_coding	intermediate filament family orphan 1
novel_NIR_15720	chr6	125122992	125126062	+	125122992	125126552	A3SS	ENSMUST00000119527.8	novel	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.40	6	9	6	9	y	0.44	4	5	4	5	y	0.15	2	11	2	11	y	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.10	1	9	1	9	n	0.40	2	3	2	3	y	0.12	1	7	1	7	n	ENSMUSG00000038271.18	Iffo1	chr6	protein_coding	intermediate filament family orphan 1
novel_NIR_15721	chr6	125142274	125143377	-	125142274	125143357	A5SS	ENSMUST00000117757.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000057666.19	Gapdh	chr6	protein_coding	glyceraldehyde-3-phosphate dehydrogenase
novel_NIR_15722	chr6	125208317	125214924	+	125208317	125215624	A3SS	ENSMUST00000160523.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030337.17	Vamp1	chr6	protein_coding	vesicle-associated membrane protein 1
novel_NIR_15723	chr6	125208317	125214924	+	125208317	125217298	A3SS	ENSMUST00000159547.3	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030337.17	Vamp1	chr6	protein_coding	vesicle-associated membrane protein 1
novel_NIR_15724	chr6	125216489	125217298	+	125196600	125217298	A5SS	ENSMUST00000063588.11	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030337.17	Vamp1	chr6	protein_coding	vesicle-associated membrane protein 1
novel_NIR_15725	chr6	125216489	125217298	+	125208317	125217298	A5SS	ENSMUST00000159547.3	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030337.17	Vamp1	chr6	protein_coding	vesicle-associated membrane protein 1
novel_NIR_15726	chr6	125289207	125307874	+	125299337	125307874	5pMXE	ENSMUST00000081440.14	novel	0.44	17	22	17	22	y	0.30	12	28	12	28	y	0.40	2	3	2	3	y	0.44	21	27	21	27	y	0.35	16	30	16	30	y	0.00	0	3	0	3	n	0.47	19	21	19	21	y	0.55	6	5	6	5	y	0.30	13	30	13	30	y	0.48	26	28	26	28	y	0.41	12	17	12	17	y	0.50	20	20	20	20	y	ENSMUSG00000030340.17	Scnn1a	chr6	protein_coding	sodium channel, nonvoltage-gated 1 alpha
novel_NIR_15727	chr6	125298254	125298864	+	125298254	125298916	A3SS	ENSMUST00000176110.8	novel	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	6	0	6	0	y	1.00	1	0	1	0	n	ENSMUSG00000030340.17	Scnn1a	chr6	protein_coding	sodium channel, nonvoltage-gated 1 alpha
novel_NIR_15728	chr6	125298254	125298864	+	125298254	125298928	A3SS	ENSMUST00000176365.2	novel	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	6	0	6	0	y	1.00	1	0	1	0	n	ENSMUSG00000030340.17	Scnn1a	chr6	protein_coding	sodium channel, nonvoltage-gated 1 alpha
novel_NIR_15729	chr6	125298254	125298864	+	125298254	125298977	A3SS	ENSMUST00000176655.8	novel	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	6	0	6	0	y	1.00	1	0	1	0	n	ENSMUSG00000030340.17	Scnn1a	chr6	protein_coding	sodium channel, nonvoltage-gated 1 alpha
novel_NIR_15730	chr6	125314401	125314760	+	125308147	125314760	A5SS	ENSMUST00000175966.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030340.17	Scnn1a	chr6	protein_coding	sodium channel, nonvoltage-gated 1 alpha
novel_NIR_15731	chr6	125326561	125326852	+	125326427	125326852	A5SS	ENSMUST00000131434.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030341.18	Tnfrsf1a	chr6	protein_coding	tumor necrosis factor receptor superfamily, member 1a
novel_NIR_15732	chr6	125326561	125326852	+	125326471	125326852	A5SS	ENSMUST00000130257.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030341.18	Tnfrsf1a	chr6	protein_coding	tumor necrosis factor receptor superfamily, member 1a
novel_NIR_15733	chr6	125335073	125337460	+	125335354	125337460	A5SS&ES	ENSMUST00000125880.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	8	0	8	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030341.18	Tnfrsf1a	chr6	protein_coding	tumor necrosis factor receptor superfamily, member 1a
novel_NIR_15734	chr6	125349829	125350070	-	125349925	125350070	A3SS	ENSMUST00000042647.7	novel	0.06	1	16	1	16	n	0.10	2	19	2	19	n	0.00	0	14	0	14	n	0.00	0	35	0	35	n	0.04	2	46	2	46	n	0.29	2	5	2	5	y	0.12	2	14	2	14	n	0.07	1	13	1	13	n	0.00	0	25	0	25	n	0.03	1	37	1	37	n	0.00	0	29	0	29	n	0.00	0	48	0	48	n	ENSMUSG00000038167.7	Plekhg6	chr6	protein_coding	pleckstrin homology domain containing, family G (with RhoGef domain) member 6
novel_NIR_15735	chr6	125355873	125357313	-	125355873;125356939	125356718;125357313	ES	ENSMUST00000042647.7	novel	0.09	1	10.0	1	9;11	n	0.08	1	12.0	1	11;13	n	0.00	0	11.0	0	17;5	n	0.06	1	15.0	1	17;13	n	0.26	5	14.0	5	17;11	y	0.43	5	6.5	5	8;5	y	0.18	3	13.5	3	13;14	y	0.11	1	8.5	1	9;8	n	0.07	1	14.0	1	16;12	n	0.08	2	24.5	2	31;18	n	0.36	6	10.5	6	11;10	y	0.47	16	18.0	16	20;16	y	ENSMUSG00000038167.7	Plekhg6	chr6	protein_coding	pleckstrin homology domain containing, family G (with RhoGef domain) member 6
novel_NIR_15736	chr6	125356745	125357313	-	125356939	125357313	A3SS	ENSMUST00000042647.7	novel	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.17	1	5	1	5	n	0.00	0	13	0	13	n	0.21	3	11	3	11	y	0.17	1	5	1	5	n	0.07	1	14	1	14	n	0.00	0	8	0	8	n	0.08	1	12	1	12	n	0.00	0	18	0	18	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	ENSMUSG00000038167.7	Plekhg6	chr6	protein_coding	pleckstrin homology domain containing, family G (with RhoGef domain) member 6
novel_NIR_15737	chr6	127944235	128000884	-	127944235	128060345	A5SS	ENSMUST00000145940.8	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000030352.16	Tspan9	chr6	protein_coding	tetraspanin 9
novel_NIR_15738	chr6	128011208	128058795	-	128011208	128011739	5pMXE	ENSMUST00000202372.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000030352.16	Tspan9	chr6	protein_coding	tetraspanin 9
novel_NIR_15739	chr6	128011208	128058795	-	128011208	128054990	A5SS&ES	ENSMUST00000154375.8	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.20	1	4	1	4	n	0.80	4	1	4	1	y	0.00	0	6	0	6	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.20	1	4	1	4	n	ENSMUSG00000030352.16	Tspan9	chr6	protein_coding	tetraspanin 9
novel_NIR_15740	chr6	128011208	128058795	-	128011208	128120477	A5SS	ENSMUST00000112173.8	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.33	1	2	1	2	n	1.00	4	0	4	0	y	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000030352.16	Tspan9	chr6	protein_coding	tetraspanin 9
novel_NIR_15741	chr6	128060444	128080847	-	128060444	128101179	A5SS	ENSMUST00000127105.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000030352.16	Tspan9	chr6	protein_coding	tetraspanin 9
novel_NIR_15742	chr6	128060444	128080847	-	128060444	128113552	A5SS	ENSMUST00000112171.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000030352.16	Tspan9	chr6	protein_coding	tetraspanin 9
novel_NIR_15743	chr6	128060444	128080847	-	128060444	128117663	A5SS	ENSMUST00000146268.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000030352.16	Tspan9	chr6	protein_coding	tetraspanin 9
novel_NIR_15744	chr6	128166682	128167506	-	128166682	128177143	A5SS	ENSMUST00000071101.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000056771.8	Gm10010	chr6	lncRNA	predicted gene 10010
novel_NIR_15745	chr6	128336317	128339368	-	128336317	128339021	A5SS&ES	ENSMUST00000112152.8	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	ENSMUSG00000048668.17	Rhno1	chr6	protein_coding	RAD9-HUS1-RAD1 interacting nuclear orphan 1
novel_NIR_15746	chr6	128336317	128339368	-	128336317	128339310	A5SS	ENSMUST00000203719.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000048668.17	Rhno1	chr6	protein_coding	RAD9-HUS1-RAD1 interacting nuclear orphan 1
novel_NIR_15747	chr6	128336317	128339368	-	128336317	128339331	A5SS	ENSMUST00000057421.15	novel	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.22	2	7	2	7	y	ENSMUSG00000048668.17	Rhno1	chr6	protein_coding	RAD9-HUS1-RAD1 interacting nuclear orphan 1
novel_NIR_15748	chr6	128336317	128339368	-	128336317	128339802	A5SS	ENSMUST00000112151.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.29	2	5	2	5	y	ENSMUSG00000048668.17	Rhno1	chr6	protein_coding	RAD9-HUS1-RAD1 interacting nuclear orphan 1
novel_NIR_15749	chr6	128390632	128391108	-	128390636	128391108	A3SS	ENSMUST00000001559.11	novel	0.19	4	17	4	17	y	0.00	0	12	0	12	n	0.00	0	30	0	30	n	0.11	2	16	2	16	n	0.00	0	26	0	26	n	0.00	0	13	0	13	n	0.00	0	20	0	20	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.00	0	15	0	15	n	0.00	0	18	0	18	n	ENSMUSG00000001518.13	Itfg2	chr6	protein_coding	integrin alpha FG-GAP repeat containing 2
novel_NIR_15750	chr6	128413677	128413764	-	128413677	128414573	A5SS	ENSMUST00000151796.3	novel	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.10	1	9	1	9	n	0.00	0	20	0	20	n	0.11	1	8	1	8	n	0.00	0	17	0	17	n	0.12	1	7	1	7	n	0.33	2	4	2	4	y	0.06	1	17	1	17	n	0.11	1	8	1	8	n	0.20	2	8	2	8	n	ENSMUSG00000030357.11	Fkbp4	chr6	protein_coding	FK506 binding protein 4
novel_NIR_15751	chr6	128413677	128413764	-	128413677	128415031	A5SS	ENSMUST00000150387.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000030357.11	Fkbp4	chr6	protein_coding	FK506 binding protein 4
novel_NIR_15752	chr6	128464496	128503542	-	128464496	128464757	5pMXE	ENSMUST00000204291.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000030359.15	Pzp	chr6	protein_coding	PZP, alpha-2-macroglobulin like
novel_NIR_15753	chr6	128499147	128499532	-	128499147	128500740	A5SS	ENSMUST00000143664.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.92	24	2	24	2	y	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	1.00	3	0	3	0	y	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000030359.15	Pzp	chr6	protein_coding	PZP, alpha-2-macroglobulin like
novel_NIR_15754	chr6	128500479	128500740	-	128499147	128500740	A3SS	ENSMUST00000143664.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.82	9	2	9	2	y	0.25	1	3	1	3	n	0.21	3	11	3	11	y	0.59	10	7	10	7	y	1.00	2	0	2	0	y	0.56	9	7	9	7	y	-	-	-	-	-	-	0.36	5	9	5	9	y	0.67	2	1	2	1	y	-	-	-	-	-	-	ENSMUSG00000030359.15	Pzp	chr6	protein_coding	PZP, alpha-2-macroglobulin like
novel_NIR_15755	chr6	128520304	128520791	-	128520304	128520895	A5SS	ENSMUST00000060574.9	novel	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000047228.10	A2ml1	chr6	protein_coding	alpha-2-macroglobulin like 1
novel_NIR_15756	chr6	128921303	128951683	-	128930087	128951683	3pMXE	ENSMUST00000141700.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000085786.2	Gm15987	chr6	lncRNA	predicted gene 15987
novel_NIR_15757	chr6	129181379	129193265	-	129187166	129193265	3pMXE	ENSMUST00000181238.2	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	ENSMUSG00000097354.8	2310001H17Rik	chr6	lncRNA	RIKEN cDNA 2310001H17 gene
novel_NIR_15758	chr6	129187166	129204591	-	129187166	129193265	A5SS&ES	ENSMUST00000181238.2	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.50	2	2	2	2	y	ENSMUSG00000097354.8	2310001H17Rik	chr6	lncRNA	RIKEN cDNA 2310001H17 gene
novel_NIR_15759	chr6	129187166	129204591	-	129193499	129204591	3pMXE	ENSMUST00000205051.3	novel	0.00	0	4	0	4	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.22	2	7	2	7	y	ENSMUSG00000097354.8	2310001H17Rik	chr6	lncRNA	RIKEN cDNA 2310001H17 gene
novel_NIR_15760	chr6	129187166	129210027	-	129187166	129193265	A5SS&ES	ENSMUST00000181238.2	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	4	2	4	2	y	0.10	1	9	1	9	n	0.00	0	2	0	2	n	ENSMUSG00000097354.8	2310001H17Rik	chr6	lncRNA	RIKEN cDNA 2310001H17 gene
novel_NIR_15761	chr6	129187166	129210027	-	129193499	129210027	3pMXE	ENSMUST00000181517.8	novel	0.00	0	3	0	3	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.14	1	6	1	6	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.50	4	4	4	4	y	0.10	1	9	1	9	n	0.00	0	10	0	10	n	ENSMUSG00000097354.8	2310001H17Rik	chr6	lncRNA	RIKEN cDNA 2310001H17 gene
novel_NIR_15762	chr6	129204726	129210027	-	129193499	129210027	A3SS	ENSMUST00000181517.8	novel	0.40	2	3	2	3	y	0.00	0	6	0	6	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.33	1	2	1	2	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.33	2	4	2	4	y	0.25	3	9	3	9	y	0.00	0	10	0	10	n	ENSMUSG00000097354.8	2310001H17Rik	chr6	lncRNA	RIKEN cDNA 2310001H17 gene
novel_NIR_15763	chr6	129204726	129210027	-	129204737	129210027	A3SS	ENSMUST00000205051.3	novel	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.22	2	7	2	7	y	0.50	3	3	3	3	y	0.00	0	6	0	6	n	ENSMUSG00000097354.8	2310001H17Rik	chr6	lncRNA	RIKEN cDNA 2310001H17 gene
novel_NIR_15764	chr6	129210116	129210741	-	129210116	129210848	A5SS	ENSMUST00000181517.8	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.60	3	2	3	2	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000097354.8	2310001H17Rik	chr6	lncRNA	RIKEN cDNA 2310001H17 gene
novel_NIR_15765	chr6	129210116	129210741	-	129210116	129210859	A5SS	ENSMUST00000204328.2	novel	0.38	3	5	3	5	y	-	-	-	-	-	-	0.33	1	2	1	2	n	0.67	2	1	2	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	ENSMUSG00000097354.8	2310001H17Rik	chr6	lncRNA	RIKEN cDNA 2310001H17 gene
novel_NIR_15766	chr6	129210116	129211647	-	129210116	129210848	5pMXE	ENSMUST00000181517.8	novel	1.00	3	0	3	0	y	1.00	3	0	3	0	y	0.00	0	1	0	1	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.75	6	2	6	2	y	1.00	3	0	3	0	y	0.67	4	2	4	2	y	0.71	5	2	5	2	y	0.40	2	3	2	3	y	0.33	1	2	1	2	n	ENSMUSG00000097354.8	2310001H17Rik	chr6	lncRNA	RIKEN cDNA 2310001H17 gene
novel_NIR_15767	chr6	129210116	129211647	-	129210116	129210859	5pMXE	ENSMUST00000204328.2	novel	0.38	3	5	3	5	y	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.67	2	1	2	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.60	6	4	6	4	y	0.50	3	3	3	3	y	1.00	4	0	4	0	y	1.00	5	0	5	0	y	0.33	2	4	2	4	y	0.20	1	4	1	4	n	ENSMUSG00000097354.8	2310001H17Rik	chr6	lncRNA	RIKEN cDNA 2310001H17 gene
novel_NIR_15768	chr6	129210116	129214959	-	129210116	129210848	5pMXE	ENSMUST00000181517.8	novel	1.00	15	0	15	0	y	1.00	9	0	9	0	y	0.67	2	1	2	1	y	1.00	12	0	12	0	y	1.00	9	0	9	0	y	-	-	-	-	-	-	0.89	17	2	17	2	y	1.00	1	0	1	0	n	0.92	23	2	23	2	y	0.89	17	2	17	2	y	0.90	28	3	28	3	y	0.92	23	2	23	2	y	ENSMUSG00000097354.8	2310001H17Rik	chr6	lncRNA	RIKEN cDNA 2310001H17 gene
novel_NIR_15769	chr6	129210116	129214959	-	129210116	129210859	5pMXE	ENSMUST00000204328.2	novel	0.75	15	5	15	5	y	1.00	9	0	9	0	y	0.50	2	2	2	2	y	0.92	12	1	12	1	y	1.00	9	0	9	0	y	-	-	-	-	-	-	0.81	17	4	17	4	y	0.25	1	3	1	3	n	1.00	23	0	23	0	y	1.00	17	0	17	0	y	0.88	28	4	28	4	y	0.85	23	4	23	4	y	ENSMUSG00000097354.8	2310001H17Rik	chr6	lncRNA	RIKEN cDNA 2310001H17 gene
novel_NIR_15770	chr6	129210116	129214959	-	129210116	129214702	5pMXE	ENSMUST00000205051.3	novel	0.17	15	72	15	72	y	0.11	9	73	9	73	n	0.17	2	10	2	10	y	0.16	12	63	12	63	y	0.12	9	63	9	63	n	0.00	0	11	0	11	n	0.17	17	86	17	86	y	0.03	1	28	1	28	n	0.16	23	118	23	118	y	0.14	17	106	17	106	n	0.17	28	132	28	132	y	0.16	23	124	23	124	y	ENSMUSG00000097354.8	2310001H17Rik	chr6	lncRNA	RIKEN cDNA 2310001H17 gene
novel_NIR_15771	chr6	129210116	129215399	-	129210116	129210848	5pMXE	ENSMUST00000181517.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000097354.8	2310001H17Rik	chr6	lncRNA	RIKEN cDNA 2310001H17 gene
novel_NIR_15772	chr6	129210116	129215399	-	129210116	129210859	5pMXE	ENSMUST00000204328.2	novel	0.00	0	5	0	5	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	4	0	4	n	ENSMUSG00000097354.8	2310001H17Rik	chr6	lncRNA	RIKEN cDNA 2310001H17 gene
novel_NIR_15773	chr6	129210858	129214702	-	129193499	129214702	A3SS	ENSMUST00000181238.2	novel	0.25	1	3	1	3	n	0.00	0	5	0	5	n	1.00	1	0	1	0	n	0.60	3	2	3	2	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000097354.8	2310001H17Rik	chr6	lncRNA	RIKEN cDNA 2310001H17 gene
novel_NIR_15774	chr6	129210962	129214702	-	129193499	129214702	A3SS	ENSMUST00000181238.2	novel	0.00	0	3	0	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	ENSMUSG00000097354.8	2310001H17Rik	chr6	lncRNA	RIKEN cDNA 2310001H17 gene
novel_NIR_15775	chr6	129211702	129214702	-	129193499	129214702	A3SS	ENSMUST00000181238.2	novel	0.00	0	3	0	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000097354.8	2310001H17Rik	chr6	lncRNA	RIKEN cDNA 2310001H17 gene
novel_NIR_15776	chr6	129211759	129214702	-	129193499	129214702	A3SS	ENSMUST00000181238.2	novel	0.00	0	3	0	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	ENSMUSG00000097354.8	2310001H17Rik	chr6	lncRNA	RIKEN cDNA 2310001H17 gene
novel_NIR_15777	chr6	129214807	129215399	-	129214820	129215399	A3SS	ENSMUST00000180379.4	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	10	0	10	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.40	2	3	2	3	y	0.00	0	1	0	1	n	ENSMUSG00000097354.8	2310001H17Rik	chr6	lncRNA	RIKEN cDNA 2310001H17 gene
novel_NIR_15778	chr6	129362454	129392418	-	129362454	129362740	5pMXE	ENSMUST00000112082.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030158.13	Clec12b	chr6	protein_coding	C-type lectin domain family 12, member B
novel_NIR_15779	chr6	129392324	129396449	+	129392324	129393291	A3SS&ES	ENSMUST00000058352.15	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.67	2	1	2	1	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	ENSMUSG00000046080.18	Clec9a	chr6	protein_coding	C-type lectin domain family 9, member a
novel_NIR_15780	chr6	129392324	129396449	+	129392324	129396445	A3SS	ENSMUST00000088075.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000046080.18	Clec9a	chr6	protein_coding	C-type lectin domain family 9, member a
novel_NIR_15781	chr6	129392324	129396449	+	129392324	129399189	A3SS	ENSMUST00000204860.3	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000046080.18	Clec9a	chr6	protein_coding	C-type lectin domain family 9, member a
novel_NIR_15782	chr6	129392324	129398007	+	129392324	129399189	A3SS	ENSMUST00000204860.3	novel	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000046080.18	Clec9a	chr6	protein_coding	C-type lectin domain family 9, member a
novel_NIR_15783	chr6	129392324	129398007	+	129392324;129396596	129396445;129398007	ES	ENSMUST00000088075.8	novel	0.50	3	3.0	3	0;6	y	0.00	0	2.0	0	1;3	n	0.00	0	4.0	0	0;8	n	0.00	0	1.0	0	0;2	n	0.00	0	4.5	0	1;8	n	0.00	0	2.0	0	0;4	n	0.57	2	1.5	2	0;3	y	0.00	0	1.5	0	0;3	n	0.00	0	2.0	0	0;4	n	0.00	0	1.5	0	0;3	n	0.00	0	2.0	0	1;3	n	0.00	0	3.5	0	0;7	n	ENSMUSG00000046080.18	Clec9a	chr6	protein_coding	C-type lectin domain family 9, member a
novel_NIR_15784	chr6	129509905	129510216	-	129509905	129510201	A5SS	ENSMUST00000181594.3	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000097675.3	1700101I11Rik	chr6	lncRNA	RIKEN cDNA 1700101I11 gene
novel_NIR_15785	chr6	129518168	129518890	+	129518168	129518322	3pMXE	ENSMUST00000204956.2	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	6	0	6	n	1.00	3	0	3	0	y	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	-	-	-	-	-	-	ENSMUSG00000030161.9	Gabarapl1	chr6	protein_coding	gamma-aminobutyric acid (GABA) A receptor-associated protein-like 1
novel_NIR_15786	chr6	131205272	131219756	-	131205272;131207183	131207041;131219756	ES	ENSMUST00000032306.15	novel	0.17	2	9.5	2	8;11	y	0.27	2	5.5	2	6;5	y	0.00	0	3.0	0	4;2	n	0.00	0	1.5	0	3;0	n	0.00	0	11.5	0	11;12	n	0.00	0	1.0	0	2;0	n	0.40	1	1.5	1	1;2	n	0.00	0	1.5	0	0;3	n	0.00	0	4.0	0	5;3	n	0.00	0	3.5	0	4;3	n	0.18	2	9.0	2	9;9	y	0.00	0	5.5	0	8;3	n	ENSMUSG00000030187.16	Klra2	chr6	protein_coding	killer cell lectin-like receptor, subfamily A, member 2
novel_NIR_15787	chr6	131223061	131224212	-	131222341	131224212	A3SS	ENSMUST00000032306.15	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	8	0	8	n	ENSMUSG00000030187.16	Klra2	chr6	protein_coding	killer cell lectin-like receptor, subfamily A, member 2
novel_NIR_15788	chr6	133082568	133087756	+	133082568	133083326	3pMXE	ENSMUST00000186945.3	novel	0.41	15	22	15	22	y	0.48	20	22	20	22	y	0.47	18	20	18	20	y	0.40	12	18	12	18	y	0.14	7	42	7	42	n	0.52	13	12	13	12	y	0.31	18	41	18	41	y	0.21	3	11	3	11	y	0.18	4	18	4	18	y	0.33	21	43	21	43	y	0.44	19	24	19	24	y	0.35	22	40	22	40	y	ENSMUSG00000072704.7	Smim10l1	chr6	protein_coding	small integral membrane protein 10 like 1
novel_NIR_15789	chr6	133082568	133087756	+	133082568;133084945	133084827;133087756	ES	ENSMUST00000191462.2	novel	0.33	15	31.0	15	36;26	y	0.42	20	28.0	20	24;32	y	0.56	18	14.0	18	11;17	y	0.24	12	38.5	12	33;44	y	0.14	7	44.5	7	40;49	n	0.47	13	14.5	13	12;17	y	0.29	18	44.0	18	31;57	y	0.13	3	20.0	3	18;22	n	0.13	4	27.5	4	17;38	n	0.30	21	50.0	21	42;58	y	0.34	19	37.0	19	36;38	y	0.36	22	39.0	22	37;41	y	ENSMUSG00000072704.7	Smim10l1	chr6	protein_coding	small integral membrane protein 10 like 1
novel_NIR_15790	chr6	133083209	133083326	+	133082568	133083326	A5SS	ENSMUST00000187237.2	novel	0.04	1	22	1	22	n	0.00	0	22	0	22	n	0.20	5	20	5	20	y	0.31	8	18	8	18	y	0.12	6	42	6	42	n	0.00	0	12	0	12	n	0.00	0	41	0	41	n	0.00	0	11	0	11	n	0.00	0	18	0	18	n	0.00	0	43	0	43	n	0.11	3	24	3	24	n	0.00	0	40	0	40	n	ENSMUSG00000072704.7	Smim10l1	chr6	protein_coding	small integral membrane protein 10 like 1
novel_NIR_15791	chr6	133083546	133084827	+	133082568	133084827	A5SS	ENSMUST00000191462.2	novel	0.00	0	36	0	36	n	0.00	0	24	0	24	n	0.00	0	11	0	11	n	0.15	6	33	6	33	y	0.07	3	40	3	40	n	0.00	0	12	0	12	n	0.00	0	31	0	31	n	0.00	0	18	0	18	n	0.32	8	17	8	17	y	0.34	22	42	22	42	y	0.22	10	36	10	36	y	0.21	10	37	10	37	y	ENSMUSG00000072704.7	Smim10l1	chr6	protein_coding	small integral membrane protein 10 like 1
novel_NIR_15792	chr6	133083546	133084827	+	133083493	133084827	A5SS	ENSMUST00000187237.2	novel	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.86	6	1	6	1	y	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.67	8	4	8	4	y	1.00	22	0	22	0	y	1.00	10	0	10	0	y	0.67	10	5	10	5	y	ENSMUSG00000072704.7	Smim10l1	chr6	protein_coding	small integral membrane protein 10 like 1
novel_NIR_15793	chr6	134043428	134092183	+	134043428	134114248	A3SS	ENSMUST00000111963.8	novel	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.25	2	6	2	6	y	0.00	0	2	0	2	n	0.10	1	9	1	9	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.00	0	8	0	8	n	ENSMUSG00000030199.17	Etv6	chr6	protein_coding	ets variant 6
novel_NIR_15794	chr6	134043428	134114251	+	134013101	134114251	A5SS	ENSMUST00000164648.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	ENSMUSG00000030199.17	Etv6	chr6	protein_coding	ets variant 6
novel_NIR_15795	chr6	134043428	134114251	+	134043428	134114248	A3SS	ENSMUST00000111963.8	novel	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.20	2	8	2	8	y	ENSMUSG00000030199.17	Etv6	chr6	protein_coding	ets variant 6
novel_NIR_15796	chr6	134146267	134148862	-	134146267	134148816	A5SS	ENSMUST00000164616.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	7	0	7	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000091438.2	Gm17088	chr6	lncRNA	predicted gene 17088
novel_NIR_15797	chr6	134684656	134697457	-	134695048	134697457	3pMXE	ENSMUST00000129433.4	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	5	0	5	n	ENSMUSG00000030203.18	Dusp16	chr6	protein_coding	dual specificity phosphatase 16
novel_NIR_15798	chr6	134716938	134735598	-	134716938	134718781	A5SS&ES	ENSMUST00000148926.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000030203.18	Dusp16	chr6	protein_coding	dual specificity phosphatase 16
novel_NIR_15799	chr6	134716938	134735598	-	134716938	134720691	5pMXE	ENSMUST00000203452.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030203.18	Dusp16	chr6	protein_coding	dual specificity phosphatase 16
novel_NIR_15800	chr6	134738397	134738642	-	134738397	134768201	A5SS	ENSMUST00000149776.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.11	1	8	1	8	n	0.33	1	2	1	2	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000030203.18	Dusp16	chr6	protein_coding	dual specificity phosphatase 16
novel_NIR_15801	chr6	134738397	134758476	-	134738397	134768201	A5SS	ENSMUST00000149776.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000030203.18	Dusp16	chr6	protein_coding	dual specificity phosphatase 16
novel_NIR_15802	chr6	134738397	134768034	-	134738397	134768201	A5SS	ENSMUST00000149776.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.20	2	8	2	8	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030203.18	Dusp16	chr6	protein_coding	dual specificity phosphatase 16
novel_NIR_15803	chr6	134826190	134829241	+	134826263	134829241	A5SS	ENSMUST00000111937.2	novel	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.05	1	20	1	20	n	0.15	2	11	2	11	y	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.11	1	8	1	8	n	0.25	4	12	4	12	y	0.00	0	22	0	22	n	0.08	1	12	1	12	n	0.08	1	11	1	11	n	ENSMUSG00000032652.14	Crebl2	chr6	protein_coding	cAMP responsive element binding protein-like 2
novel_NIR_15804	chr6	134992903	134994084	+	134988691	134994084	A5SS	ENSMUST00000130851.8	novel	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030204.11	Ddx47	chr6	protein_coding	DEAD box helicase 47
novel_NIR_15805	chr6	134992903	134994084	+	134992336	134994084	A5SS	ENSMUST00000205055.3	novel	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030204.11	Ddx47	chr6	protein_coding	DEAD box helicase 47
novel_NIR_15806	chr6	135132287	135140987	-	135132287	135145136	A5SS	ENSMUST00000204000.2	novel	0.94	67	4	67	4	y	1.00	58	0	58	0	y	0.73	8	3	8	3	y	0.94	49	3	49	3	y	0.88	59	8	59	8	y	0.83	20	4	20	4	y	0.87	55	8	55	8	y	0.92	22	2	22	2	y	0.95	60	3	60	3	y	0.93	62	5	62	5	y	0.92	69	6	69	6	y	0.93	57	4	57	4	y	ENSMUSG00000042770.9	Hebp1	chr6	protein_coding	heme binding protein 1
novel_NIR_15807	chr6	135132287	135140987	-	135132287	135174874	A5SS	ENSMUST00000204730.2	novel	1.00	67	0	67	0	y	1.00	58	0	58	0	y	1.00	8	0	8	0	y	1.00	49	0	49	0	y	1.00	59	0	59	0	y	1.00	20	0	20	0	y	1.00	55	0	55	0	y	1.00	22	0	22	0	y	1.00	60	0	60	0	y	1.00	62	0	62	0	y	1.00	69	0	69	0	y	1.00	57	0	57	0	y	ENSMUSG00000042770.9	Hebp1	chr6	protein_coding	heme binding protein 1
novel_NIR_15808	chr6	135132287	135140998	-	135132287	135145136	A5SS	ENSMUST00000204000.2	novel	0.86	24	4	24	4	y	1.00	30	0	30	0	y	0.67	6	3	6	3	y	0.86	18	3	18	3	y	0.81	34	8	34	8	y	0.71	10	4	10	4	y	0.64	14	8	14	8	y	0.89	17	2	17	2	y	0.87	20	3	20	3	y	0.82	23	5	23	5	y	0.76	19	6	19	6	y	0.88	29	4	29	4	y	ENSMUSG00000042770.9	Hebp1	chr6	protein_coding	heme binding protein 1
novel_NIR_15809	chr6	135132287	135140998	-	135132287	135174874	A5SS	ENSMUST00000204730.2	novel	1.00	24	0	24	0	y	1.00	30	0	30	0	y	1.00	6	0	6	0	y	1.00	18	0	18	0	y	1.00	34	0	34	0	y	1.00	10	0	10	0	y	1.00	14	0	14	0	y	1.00	17	0	17	0	y	1.00	20	0	20	0	y	1.00	23	0	23	0	y	1.00	19	0	19	0	y	1.00	29	0	29	0	y	ENSMUSG00000042770.9	Hebp1	chr6	protein_coding	heme binding protein 1
novel_NIR_15810	chr6	135132287	135145039	-	135132287	135145136	A5SS	ENSMUST00000204000.2	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.33	4	8	4	8	y	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	ENSMUSG00000042770.9	Hebp1	chr6	protein_coding	heme binding protein 1
novel_NIR_15811	chr6	135132287	135145039	-	135132287	135174874	A5SS	ENSMUST00000204730.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000042770.9	Hebp1	chr6	protein_coding	heme binding protein 1
novel_NIR_15812	chr6	135186429	135188803	+	135186429	135188833	A3SS	ENSMUST00000111915.8	novel	0.06	2	33	2	33	n	0.00	0	27	0	27	n	0.23	18	60	18	60	y	0.15	9	50	9	50	y	0.12	12	86	12	86	n	0.30	21	48	21	48	y	0.19	12	50	12	50	y	0.11	8	65	8	65	n	0.17	5	25	5	25	y	0.12	5	37	5	37	n	0.00	0	24	0	24	n	0.17	7	34	7	34	y	ENSMUSG00000030207.16	Fam234b	chr6	protein_coding	family with sequence similarity 234, member B
novel_NIR_15813	chr6	136806215	136807899	+	136806067	136807899	A5SS	ENSMUST00000052702.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000047515.9	BC049715	chr6	protein_coding	cDNA sequence BC049715
novel_NIR_15814	chr6	136888643	136890361	-	136888643	136896868	A5SS	ENSMUST00000032343.7	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.10	2	19	2	19	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.25	1	3	1	3	n	0.33	3	6	3	6	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000030219.14	Erp27	chr6	protein_coding	endoplasmic reticulum protein 27
novel_NIR_15815	chr6	136897005	136897188	-	136897005	136898727	A5SS	ENSMUST00000032343.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.33	2	4	2	4	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030219.14	Erp27	chr6	protein_coding	endoplasmic reticulum protein 27
novel_NIR_15816	chr6	136897005	136897573	-	136897005	136898727	A5SS	ENSMUST00000032343.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.33	2	4	2	4	y	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030219.14	Erp27	chr6	protein_coding	endoplasmic reticulum protein 27
novel_NIR_15817	chr6	136910771	136916411	-	136910771	136911865	A5SS&ES	ENSMUST00000154440.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000030220.14	Arhgdib	chr6	protein_coding	Rho, GDP dissociation inhibitor (GDI) beta
novel_NIR_15818	chr6	136910771	136916411	-	136910771	136918436	A5SS	ENSMUST00000111892.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.50	1	1	1	1	n	ENSMUSG00000030220.14	Arhgdib	chr6	protein_coding	Rho, GDP dissociation inhibitor (GDI) beta
novel_NIR_15819	chr6	136910771	136916411	-	136910771	136918811	A5SS	ENSMUST00000111891.4	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	ENSMUSG00000030220.14	Arhgdib	chr6	protein_coding	Rho, GDP dissociation inhibitor (GDI) beta
novel_NIR_15820	chr6	136910771	136916452	-	136910771	136911865	A5SS&ES	ENSMUST00000154440.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030220.14	Arhgdib	chr6	protein_coding	Rho, GDP dissociation inhibitor (GDI) beta
novel_NIR_15821	chr6	136910771	136916452	-	136910771	136918436	A5SS	ENSMUST00000111892.8	novel	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	ENSMUSG00000030220.14	Arhgdib	chr6	protein_coding	Rho, GDP dissociation inhibitor (GDI) beta
novel_NIR_15822	chr6	136910771	136916452	-	136910771	136918649	A5SS	ENSMUST00000032344.12	novel	0.20	2	8	2	8	y	0.00	0	9	0	9	n	0.00	0	19	0	19	n	0.00	0	10	0	10	n	0.00	0	24	0	24	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	ENSMUSG00000030220.14	Arhgdib	chr6	protein_coding	Rho, GDP dissociation inhibitor (GDI) beta
novel_NIR_15823	chr6	136910771	136916452	-	136910771	136918811	A5SS	ENSMUST00000111891.4	novel	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000030220.14	Arhgdib	chr6	protein_coding	Rho, GDP dissociation inhibitor (GDI) beta
novel_NIR_15824	chr6	136910771	136916509	-	136910771	136918436	A5SS	ENSMUST00000111892.8	novel	0.33	1	2	1	2	n	1.00	1	0	1	0	n	0.60	3	2	3	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	ENSMUSG00000030220.14	Arhgdib	chr6	protein_coding	Rho, GDP dissociation inhibitor (GDI) beta
novel_NIR_15825	chr6	136910771	136916509	-	136910771	136918811	A5SS	ENSMUST00000111891.4	novel	0.33	1	2	1	2	n	1.00	1	0	1	0	n	0.50	3	3	3	3	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000030220.14	Arhgdib	chr6	protein_coding	Rho, GDP dissociation inhibitor (GDI) beta
novel_NIR_15826	chr6	136910771	136916509	-	136910771;136912144	136911865;136916509	ES	ENSMUST00000154440.2	novel	1.00	1	0.0	1	0;0	n	1.00	1	0.0	1	0;0	n	0.75	3	1.0	3	2;0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030220.14	Arhgdib	chr6	protein_coding	Rho, GDP dissociation inhibitor (GDI) beta
novel_NIR_15827	chr6	137813881	137833675	+	137807303	137833675	A5SS	ENSMUST00000203693.3	novel	1.00	2	0	2	0	y	0.75	3	1	3	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.80	4	1	4	1	y	ENSMUSG00000030225.12	Dera	chr6	protein_coding	deoxyribose-phosphate aldolase (putative)
novel_NIR_15828	chr6	138020598	138049851	-	138020598	138032620	5pMXE	ENSMUST00000154461.2	novel	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.17	1	5	1	5	n	0.00	0	17	0	17	n	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.25	2	6	2	6	y	ENSMUSG00000044378.13	Slc15a5	chr6	protein_coding	solute carrier family 15, member 5
novel_NIR_15829	chr6	138020598	138049851	-	138020598;138032789	138032620;138049851	ES	ENSMUST00000050132.10	novel	0.00	0	7.5	0	7;8	n	0.00	0	3.0	0	3;3	n	0.00	0	6.5	0	8;5	n	0.00	0	11.0	0	12;10	n	0.00	0	8.5	0	12;5	n	0.00	0	7.5	0	11;4	n	0.00	0	9.0	0	11;7	n	0.12	1	7.0	1	5;9	n	0.00	0	14.5	0	17;12	n	0.00	0	12.5	0	12;13	n	0.00	0	10.0	0	11;9	n	0.24	2	6.5	2	6;7	y	ENSMUSG00000044378.13	Slc15a5	chr6	protein_coding	solute carrier family 15, member 5
novel_NIR_15830	chr6	138032789;138047298	138047219;138049851	-	138032789	138049851	cassetteExon	ENSMUST00000050132.10	novel	0.00	0.0	8	0;0	8	n	0.33	1.5	3	0;3	3	n	0.00	0.0	5	0;0	5	n	0.00	0.0	10	0;0	10	n	0.09	0.5	5	0;1	5	n	0.38	2.5	4	2;3	4	y	0.12	1.0	7	0;2	7	n	0.00	0.0	9	0;0	9	n	0.00	0.0	12	0;0	12	n	0.07	1.0	13	0;2	13	n	0.10	1.0	9	0;2	9	n	0.00	0.0	7	0;0	7	n	ENSMUSG00000044378.13	Slc15a5	chr6	protein_coding	solute carrier family 15, member 5
novel_NIR_15831	chr6	138047298	138049851	-	138032789	138049851	A3SS	ENSMUST00000050132.10	novel	0.00	0	8	0	8	n	0.50	3	3	3	3	y	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.17	1	5	1	5	n	0.43	3	4	3	4	n	0.22	2	7	2	7	y	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.13	2	13	2	13	n	0.18	2	9	2	9	n	0.00	0	7	0	7	n	ENSMUSG00000044378.13	Slc15a5	chr6	protein_coding	solute carrier family 15, member 5
novel_NIR_15832	chr6	138050073	138050185	-	138050073	138056575	A5SS	ENSMUST00000171804.4	novel	0.67	6	3	6	3	y	0.50	2	2	2	2	y	0.50	3	3	3	3	y	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.67	2	1	2	1	y	0.50	3	3	3	3	y	0.50	1	1	1	1	n	0.29	2	5	2	5	y	0.17	3	15	3	15	y	1.00	4	0	4	0	y	0.00	0	6	0	6	n	ENSMUSG00000044378.13	Slc15a5	chr6	protein_coding	solute carrier family 15, member 5
novel_NIR_15833	chr6	138050073	138057653	-	138050073	138056575	5pMXE	ENSMUST00000171804.4	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	15	0	15	n	-	-	-	-	-	-	0.25	2	6	2	6	y	ENSMUSG00000044378.13	Slc15a5	chr6	protein_coding	solute carrier family 15, member 5
novel_NIR_15834	chr6	138117604	138118365	+	138117604	138127766	A3SS	ENSMUST00000140932.2	novel	1.00	5	0	5	0	y	0.60	3	2	3	2	y	1.00	27	0	27	0	y	0.71	5	2	5	2	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	6	0	6	0	y	-	-	-	-	-	-	0.50	3	3	3	3	y	0.00	0	3	0	3	n	0.50	4	4	4	4	y	1.00	3	0	3	0	y	ENSMUSG00000008540.12	Mgst1	chr6	protein_coding	microsomal glutathione S-transferase 1
novel_NIR_15835	chr6	138117604	138118788	+	138117604	138127766	A3SS	ENSMUST00000140932.2	novel	1.00	1	0	1	0	n	0.60	3	2	3	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.57	4	3	4	3	y	0.57	4	3	4	3	y	0.00	0	4	0	4	n	-	-	-	-	-	-	ENSMUSG00000008540.12	Mgst1	chr6	protein_coding	microsomal glutathione S-transferase 1
novel_NIR_15836	chr6	138117604	138124104	+	138117604	138127766	A3SS	ENSMUST00000140932.2	novel	1.00	5	0	5	0	y	0.33	1	2	1	2	n	1.00	3	0	3	0	y	0.80	8	2	8	2	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	0.00	0	3	0	3	n	0.80	12	3	12	3	y	0.56	5	4	5	4	y	1.00	5	0	5	0	y	ENSMUSG00000008540.12	Mgst1	chr6	protein_coding	microsomal glutathione S-transferase 1
novel_NIR_15837	chr6	138117604	138124114	+	138117604	138127766	A3SS	ENSMUST00000140932.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.00	0	4	0	4	n	-	-	-	-	-	-	ENSMUSG00000008540.12	Mgst1	chr6	protein_coding	microsomal glutathione S-transferase 1
novel_NIR_15838	chr6	138118682	138124657	+	138117650	138124657	A5SS	ENSMUST00000120302.8	novel	0.40	2	3	2	3	y	0.78	7	2	7	2	y	0.25	2	6	2	6	y	0.67	6	3	6	3	y	0.55	6	5	6	5	y	0.00	0	2	0	2	n	0.50	5	5	5	5	y	0.00	0	2	0	2	n	0.45	5	6	5	6	y	0.57	4	3	4	3	y	0.86	6	1	6	1	y	0.00	0	4	0	4	n	ENSMUSG00000008540.12	Mgst1	chr6	protein_coding	microsomal glutathione S-transferase 1
novel_NIR_15839	chr6	138118682	138124657	+	138118714	138124657	A5SS	ENSMUST00000120230.8	novel	0.06	2	34	2	34	n	0.21	7	27	7	27	y	0.07	2	26	2	26	n	0.14	6	36	6	36	n	0.15	6	35	6	35	y	0.00	0	17	0	17	n	0.08	5	58	5	58	n	0.00	0	15	0	15	n	0.11	5	40	5	40	n	0.07	4	52	4	52	n	0.15	6	35	6	35	y	0.00	0	26	0	26	n	ENSMUSG00000008540.12	Mgst1	chr6	protein_coding	microsomal glutathione S-transferase 1
novel_NIR_15840	chr6	138118842	138124657	+	138117650	138124657	A5SS	ENSMUST00000120302.8	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.62	5	3	5	3	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000008540.12	Mgst1	chr6	protein_coding	microsomal glutathione S-transferase 1
novel_NIR_15841	chr6	138121587	138124657	+	138117650	138124657	A5SS	ENSMUST00000120302.8	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.38	3	5	3	5	y	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000008540.12	Mgst1	chr6	protein_coding	microsomal glutathione S-transferase 1
novel_NIR_15842	chr6	138123225	138124657	+	138117650	138124657	A5SS	ENSMUST00000120302.8	novel	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000008540.12	Mgst1	chr6	protein_coding	microsomal glutathione S-transferase 1
novel_NIR_15843	chr6	138124233	138124657	+	138117650	138124657	A5SS	ENSMUST00000120302.8	novel	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.58	7	5	7	5	y	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.75	9	3	9	3	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000008540.12	Mgst1	chr6	protein_coding	microsomal glutathione S-transferase 1
novel_NIR_15844	chr6	138124233	138124657	+	138118714	138124657	A5SS	ENSMUST00000120230.8	novel	0.03	1	34	1	34	n	0.00	0	27	0	27	n	0.00	0	26	0	26	n	0.00	0	36	0	36	n	0.00	0	35	0	35	n	0.00	0	17	0	17	n	0.11	7	58	7	58	n	0.00	0	15	0	15	n	0.00	0	40	0	40	n	0.15	9	52	9	52	y	0.00	0	35	0	35	n	0.00	0	26	0	26	n	ENSMUSG00000008540.12	Mgst1	chr6	protein_coding	microsomal glutathione S-transferase 1
novel_NIR_15845	chr6	138124812	138127766	+	138117604	138127766	A5SS	ENSMUST00000140932.2	novel	1.00	21	0	21	0	y	0.00	0	2	0	2	n	1.00	5	0	5	0	y	0.82	9	2	9	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.64	7	4	7	4	y	1.00	9	0	9	0	y	ENSMUSG00000008540.12	Mgst1	chr6	protein_coding	microsomal glutathione S-transferase 1
novel_NIR_15846	chr6	138124813	138125384	+	138124813	138133130	A3SS	ENSMUST00000204628.3	novel	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.30	3	7	3	7	y	ENSMUSG00000008540.12	Mgst1	chr6	protein_coding	microsomal glutathione S-transferase 1
novel_NIR_15847	chr6	138124813	138126073	+	138124813	138133130	A3SS	ENSMUST00000204628.3	novel	0.20	1	4	1	4	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.20	1	4	1	4	n	0.25	1	3	1	3	n	0.33	2	4	2	4	y	0.00	0	8	0	8	n	0.29	2	5	2	5	y	-	-	-	-	-	-	1.00	6	0	6	0	y	0.69	9	4	9	4	y	0.00	0	7	0	7	n	ENSMUSG00000008540.12	Mgst1	chr6	protein_coding	microsomal glutathione S-transferase 1
novel_NIR_15848	chr6	138124813	138127757	+	138124813	138133130	A3SS	ENSMUST00000204628.3	novel	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.22	2	7	2	7	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	7	0	7	n	ENSMUSG00000008540.12	Mgst1	chr6	protein_coding	microsomal glutathione S-transferase 1
novel_NIR_15849	chr6	138124813	138127823	+	138124813	138133130	A3SS	ENSMUST00000204628.3	novel	0.33	2	4	2	4	y	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	7	0	7	n	ENSMUSG00000008540.12	Mgst1	chr6	protein_coding	microsomal glutathione S-transferase 1
novel_NIR_15850	chr6	138127860	138129141	+	138127860	138130494	A3SS	ENSMUST00000120939.8	novel	0.06	2	31	2	31	n	0.00	0	27	0	27	n	0.28	16	41	16	41	y	0.31	15	33	15	33	y	0.00	0	35	0	35	n	0.03	1	32	1	32	n	0.00	0	35	0	35	n	0.00	0	21	0	21	n	0.00	0	28	0	28	n	0.00	0	50	0	50	n	0.09	3	31	3	31	n	0.00	0	36	0	36	n	ENSMUSG00000008540.12	Mgst1	chr6	protein_coding	microsomal glutathione S-transferase 1
novel_NIR_15851	chr6	138127860	138130559	+	138127860	138130494	A3SS	ENSMUST00000120939.8	novel	0.00	0	31	0	31	n	0.13	4	27	4	27	n	0.00	0	41	0	41	n	0.03	1	33	1	33	n	0.26	12	35	12	35	y	0.00	0	32	0	32	n	0.15	6	35	6	35	y	0.09	2	21	2	21	n	0.10	3	28	3	28	n	0.26	18	50	18	50	y	0.18	7	31	7	31	y	0.38	22	36	22	36	y	ENSMUSG00000008540.12	Mgst1	chr6	protein_coding	microsomal glutathione S-transferase 1
novel_NIR_15852	chr6	138127860	138132730	+	138127860	138130494	A3SS&ES	ENSMUST00000120939.8	novel	0.09	3	31	3	31	n	0.13	4	27	4	27	n	0.02	1	41	1	41	n	0.13	5	33	5	33	n	0.00	0	35	0	35	n	0.09	3	32	3	32	n	0.17	7	35	7	35	y	0.05	1	21	1	21	n	0.07	2	28	2	28	n	0.09	5	50	5	50	n	0.00	0	31	0	31	n	0.03	1	36	1	36	n	ENSMUSG00000008540.12	Mgst1	chr6	protein_coding	microsomal glutathione S-transferase 1
novel_NIR_15853	chr6	138127860	138133132	+	138127860	138130494	A3SS&ES	ENSMUST00000120939.8	novel	0.00	0	31	0	31	n	0.93	355	27	355	27	y	0.91	409	41	409	41	y	0.92	381	33	381	33	y	0.94	539	35	539	35	y	0.00	0	32	0	32	n	0.00	0	35	0	35	n	0.93	285	21	285	21	y	0.00	0	28	0	28	n	0.90	430	50	430	50	y	0.00	0	31	0	31	n	0.00	0	36	0	36	n	ENSMUSG00000008540.12	Mgst1	chr6	protein_coding	microsomal glutathione S-transferase 1
novel_NIR_15854	chr6	13881380	13895117	+	13881380	13895091	A3SS	ENSMUST00000181225.2	novel	0.14	2	12	2	12	n	0.00	0	9	0	9	n	0.24	4	13	4	13	y	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.14	3	18	3	18	n	0.08	1	12	1	12	n	0.00	0	4	0	4	n	0.09	1	10	1	10	n	0.08	1	12	1	12	n	0.00	0	16	0	16	n	ENSMUSG00000097616.8	1110019D14Rik	chr6	lncRNA	RIKEN cDNA 1110019D14 gene
novel_NIR_15855	chr6	13881380	13895117	+	13881380	14044193	A3SS	ENSMUST00000181090.8	novel	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000097616.8	1110019D14Rik	chr6	lncRNA	RIKEN cDNA 1110019D14 gene
novel_NIR_15856	chr6	13881380	13906497	+	13881380	13895091	3pMXE	ENSMUST00000181225.2	novel	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.29	2	5	2	5	y	0.00	0	18	0	18	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	ENSMUSG00000097616.8	1110019D14Rik	chr6	lncRNA	RIKEN cDNA 1110019D14 gene
novel_NIR_15857	chr6	13881380	13906497	+	13881380	14044193	A3SS	ENSMUST00000181090.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000097616.8	1110019D14Rik	chr6	lncRNA	RIKEN cDNA 1110019D14 gene
novel_NIR_15858	chr6	13881380	13942695	+	13881380	14044193	A3SS	ENSMUST00000181090.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000097616.8	1110019D14Rik	chr6	lncRNA	RIKEN cDNA 1110019D14 gene
novel_NIR_15859	chr6	139564263	139566165	+	139564263	139565496	A3SS&ES	ENSMUST00000190962.7	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000030228.20	Pik3c2g	chr6	protein_coding	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma
novel_NIR_15860	chr6	139564263	139566165	+	139564263	139598810	A3SS	ENSMUST00000188066.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.17	1	5	1	5	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000030228.20	Pik3c2g	chr6	protein_coding	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma
novel_NIR_15861	chr6	139564263	139566168	+	139564263	139565496	A3SS&ES	ENSMUST00000190962.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000030228.20	Pik3c2g	chr6	protein_coding	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma
novel_NIR_15862	chr6	139564263	139566168	+	139564263	139598810	A3SS	ENSMUST00000188066.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.17	1	5	1	5	n	0.00	0	1	0	1	n	0.33	2	4	2	4	y	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000030228.20	Pik3c2g	chr6	protein_coding	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma
novel_NIR_15863	chr6	139564263	139569425	+	139564263	139565496	A3SS&ES	ENSMUST00000190962.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000030228.20	Pik3c2g	chr6	protein_coding	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma
novel_NIR_15864	chr6	139564263	139569425	+	139564263	139598810	A3SS	ENSMUST00000188066.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.17	1	5	1	5	n	0.00	0	1	0	1	n	0.43	3	4	3	4	y	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000030228.20	Pik3c2g	chr6	protein_coding	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma
novel_NIR_15865	chr6	139564263	139569559	+	139564263	139565496	A3SS&ES	ENSMUST00000190962.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030228.20	Pik3c2g	chr6	protein_coding	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma
novel_NIR_15866	chr6	139564263	139569559	+	139564263	139598810	A3SS	ENSMUST00000188066.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030228.20	Pik3c2g	chr6	protein_coding	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma
novel_NIR_15867	chr6	139593384	139598810	+	139576554	139598810	A5SS	ENSMUST00000186585.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030228.20	Pik3c2g	chr6	protein_coding	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma
novel_NIR_15868	chr6	139593384	139598810	+	139593384;139595158	139594901;139598810	ES	ENSMUST00000187618.7	novel	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	0.67	1	0.5	1	0;1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	0.5	0	0;1	n	-	-	-	-	-	-	0.91	5	0.5	5	0;1	y	0.00	0	0.5	0	0;1	n	-	-	-	-	-	-	ENSMUSG00000030228.20	Pik3c2g	chr6	protein_coding	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma
novel_NIR_15869	chr6	139633053	139634159	+	139626229	139634159	A5SS	ENSMUST00000186585.3	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000030228.20	Pik3c2g	chr6	protein_coding	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma
novel_NIR_15870	chr6	139689146	139693829	+	139689146	139693825	A3SS	ENSMUST00000111868.11	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.25	1	3	1	3	n	ENSMUSG00000030228.20	Pik3c2g	chr6	protein_coding	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma
novel_NIR_15871	chr6	14004702	14044193	+	13881380	14044193	A5SS	ENSMUST00000181090.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000097616.8	1110019D14Rik	chr6	lncRNA	RIKEN cDNA 1110019D14 gene
novel_NIR_15872	chr6	140372281	140420588	+	140372281	140470591	A3SS	ENSMUST00000087622.6	novel	0.29	4	10	4	10	y	0.44	7	9	7	9	y	0.52	14	13	14	13	y	0.20	4	16	4	16	y	0.21	7	27	7	27	y	0.50	8	8	8	8	y	0.19	4	17	4	17	y	0.28	9	23	9	23	y	0.15	4	23	4	23	y	0.39	9	14	9	14	y	0.48	12	13	12	13	y	0.24	9	28	9	28	y	ENSMUSG00000030231.12	Plekha5	chr6	protein_coding	pleckstrin homology domain containing, family A member 5
novel_NIR_15873	chr6	140481086	140482334	+	140481086	140482374	A3SS	ENSMUST00000205255.3	novel	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.25	2	6	2	6	y	0.00	0	9	0	9	n	-	-	-	-	-	-	ENSMUSG00000030231.12	Plekha5	chr6	protein_coding	pleckstrin homology domain containing, family A member 5
novel_NIR_15874	chr6	140481086	140482420	+	140481086	140482374	A3SS	ENSMUST00000205255.3	novel	0.30	3	7	3	7	y	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.43	3	4	3	4	y	0.14	1	6	1	6	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	-	-	-	-	-	-	ENSMUSG00000030231.12	Plekha5	chr6	protein_coding	pleckstrin homology domain containing, family A member 5
novel_NIR_15875	chr6	140525202	140526186	+	140525202	140526073	A3SS	ENSMUST00000087622.6	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000030231.12	Plekha5	chr6	protein_coding	pleckstrin homology domain containing, family A member 5
novel_NIR_15876	chr6	140539365	140541975	+	140537490	140541975	A5SS	ENSMUST00000203012.3	novel	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.17	2	10	2	10	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	15	0	15	n	0.00	0	15	0	15	n	0.00	0	8	0	8	n	ENSMUSG00000030231.12	Plekha5	chr6	protein_coding	pleckstrin homology domain containing, family A member 5
novel_NIR_15877	chr6	141575282	141580110	+	141575282;141578890	141578807;141580110	ES	ENSMUST00000042812.9	novel	0.93	195	14.0	195	13;15	y	0.95	100	5.0	100	5;5	y	0.95	90	5.0	90	4;6	y	0.94	305	18.0	305	16;20	y	0.95	402	21.5	402	25;18	y	0.92	54	4.5	54	4;5	y	0.94	285	18.5	285	11;26	y	0.94	142	8.5	142	5;12	y	0.92	216	19.5	216	25;14	y	0.92	344	28.0	344	32;24	y	0.97	179	6.0	179	8;4	y	0.95	239	13.5	239	8;19	y	ENSMUSG00000030236.11	Slco1b2	chr6	protein_coding	solute carrier organic anion transporter family, member 1b2
novel_NIR_15878	chr6	141575282	141580115	+	141575282	141578807	A3SS&ES	ENSMUST00000042812.9	novel	0.94	206	13	206	13	y	0.95	104	5	104	5	y	0.96	85	4	85	4	y	0.95	325	16	325	16	y	0.95	431	25	431	25	y	0.94	64	4	64	4	y	0.97	311	11	311	11	y	0.97	161	5	161	5	y	0.90	234	25	234	25	y	0.92	383	32	383	32	y	0.96	179	8	179	8	y	0.97	253	8	253	8	y	ENSMUSG00000030236.11	Slco1b2	chr6	protein_coding	solute carrier organic anion transporter family, member 1b2
novel_NIR_15879	chr6	141578890	141580115	+	141578890	141580110	A3SS	ENSMUST00000042812.9	novel	0.42	11	15	11	15	y	0.58	7	5	7	5	y	0.50	6	6	6	6	y	0.52	22	20	22	20	y	0.38	11	18	11	18	y	0.38	3	5	3	5	y	0.33	13	26	13	26	y	0.00	0	12	0	12	n	0.62	23	14	23	14	y	0.58	33	24	33	24	y	0.75	12	4	12	4	y	0.49	18	19	18	19	y	ENSMUSG00000030236.11	Slco1b2	chr6	protein_coding	solute carrier organic anion transporter family, member 1b2
novel_NIR_15880	chr6	141791248	141797931	-	141791244	141797931	A3SS	ENSMUST00000165990.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	ENSMUSG00000030237.15	Slco1a4	chr6	protein_coding	solute carrier organic anion transporter family, member 1a4
novel_NIR_15881	chr6	141791248	141800939	-	141791244	141800939	A3SS	ENSMUST00000163678.2	novel	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.19	3	13	3	13	y	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.00	0	18	0	18	n	0.00	0	7	0	7	n	0.00	0	32	0	32	n	0.00	0	20	0	20	n	0.00	0	27	0	27	n	0.00	0	62	0	62	n	ENSMUSG00000030237.15	Slco1a4	chr6	protein_coding	solute carrier organic anion transporter family, member 1a4
novel_NIR_15882	chr6	141791248	141800939	-	141798044	141800939	A3SS&ES	ENSMUST00000165990.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	4	0	4	n	ENSMUSG00000030237.15	Slco1a4	chr6	protein_coding	solute carrier organic anion transporter family, member 1a4
novel_NIR_15883	chr6	141812736	141813646	+	141812736	141820312	A3SS	ENSMUST00000204491.2	novel	0.39	7	11	7	11	y	0.60	9	6	9	6	y	0.80	12	3	12	3	y	0.55	12	10	12	10	y	0.67	24	12	24	12	y	0.42	5	7	5	7	y	0.55	11	9	11	9	y	0.60	9	6	9	6	y	0.33	14	29	14	29	y	0.36	14	25	14	25	y	0.31	11	24	11	24	y	0.37	22	38	22	38	y	ENSMUSG00000107516.2	Gm30784	chr6	lncRNA	predicted gene, 30784
novel_NIR_15884	chr6	141812736	141820477	+	141812736	141820312	A3SS	ENSMUST00000204491.2	novel	0.15	2	11	2	11	y	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.09	1	10	1	10	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.12	4	29	4	29	n	0.11	3	25	3	25	n	0.04	1	24	1	24	n	0.05	2	38	2	38	n	ENSMUSG00000107516.2	Gm30784	chr6	lncRNA	predicted gene, 30784
novel_NIR_15885	chr6	141854800	141857537	-	141856523	141857537	A3SS&ES	ENSMUST00000168119.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	1.00	2	0	2	0	y	ENSMUSG00000041698.12	Slco1a1	chr6	protein_coding	solute carrier organic anion transporter family, member 1a1
novel_NIR_15886	chr6	141854830	141857537	-	141856523	141857537	A3SS&ES	ENSMUST00000168119.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.86	6	1	6	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000041698.12	Slco1a1	chr6	protein_coding	solute carrier organic anion transporter family, member 1a1
novel_NIR_15887	chr6	141854856	141856402	-	141854856	141856434	A5SS	ENSMUST00000168119.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.33	1	2	1	2	n	0.00	0	3	0	3	n	ENSMUSG00000041698.12	Slco1a1	chr6	protein_coding	solute carrier organic anion transporter family, member 1a1
novel_NIR_15888	chr6	141854869	141857537	-	141856523	141857537	A3SS&ES	ENSMUST00000168119.8	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	1	0	1	n	1.00	4	0	4	0	y	ENSMUSG00000041698.12	Slco1a1	chr6	protein_coding	solute carrier organic anion transporter family, member 1a1
novel_NIR_15889	chr6	141856445	141857537	-	141856523	141857537	A3SS	ENSMUST00000168119.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000041698.12	Slco1a1	chr6	protein_coding	solute carrier organic anion transporter family, member 1a1
novel_NIR_15890	chr6	141881640	141882126	-	141881688	141882126	A3SS	ENSMUST00000168119.8	novel	0.19	23	98	23	98	y	0.07	3	40	3	40	n	0.00	0	6	0	6	n	0.14	30	179	30	179	n	0.05	3	62	3	62	n	0.25	2	6	2	6	y	0.18	12	53	12	53	y	0.00	0	6	0	6	n	0.10	27	238	27	238	n	0.10	38	330	38	330	n	0.13	23	153	23	153	n	0.07	14	180	14	180	n	ENSMUSG00000041698.12	Slco1a1	chr6	protein_coding	solute carrier organic anion transporter family, member 1a1
novel_NIR_15891	chr6	142516174	142516910	-	142516179	142516910	A3SS	ENSMUST00000203945.3	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.09	3	31	3	31	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.11	2	16	2	16	n	0.15	2	11	2	11	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.11	1	8	1	8	n	0.00	0	1	0	1	n	ENSMUSG00000030247.10	Kcnj8	chr6	protein_coding	potassium inwardly-rectifying channel, subfamily J, member 8
novel_NIR_15892	chr6	142643565	142647141	-	142643565	142647543	A5SS	ENSMUST00000100827.5	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000030249.16	Abcc9	chr6	protein_coding	ATP-binding cassette, sub-family C (CFTR/MRP), member 9
novel_NIR_15893	chr6	142710435	142713566	+	142710435	142716249	A3SS	ENSMUST00000144920.4	novel	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030282.15	Cmas	chr6	protein_coding	cytidine monophospho-N-acetylneuraminic acid synthetase
novel_NIR_15894	chr6	143036411	143039717	-	143036411	143045404	A5SS	ENSMUST00000171349.8	novel	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.22	2	7	2	7	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000030279.16	C2cd5	chr6	protein_coding	C2 calcium-dependent domain containing 5
novel_NIR_15895	chr6	143974178	144062170	-	144051457	144062170	3pMXE	ENSMUST00000149451.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041540.17	Sox5	chr6	protein_coding	SRY (sex determining region Y)-box 5
novel_NIR_15896	chr6	144100949	144155962	-	144100949	144149520	5pMXE	ENSMUST00000129050.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000041540.17	Sox5	chr6	protein_coding	SRY (sex determining region Y)-box 5
novel_NIR_15897	chr6	144100949	144155962	-	144100949	144149737	5pMXE	ENSMUST00000139478.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	ENSMUSG00000041540.17	Sox5	chr6	protein_coding	SRY (sex determining region Y)-box 5
novel_NIR_15898	chr6	144100949	144155962	-	144100949	144155057	5pMXE	ENSMUST00000038815.14	novel	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.14	1	6	1	6	n	0.20	1	4	1	4	n	0.29	2	5	2	5	y	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.20	1	4	1	4	n	0.00	0	17	0	17	n	ENSMUSG00000041540.17	Sox5	chr6	protein_coding	SRY (sex determining region Y)-box 5
novel_NIR_15899	chr6	144100949	144155962	-	144100949	144380151	A5SS	ENSMUST00000141102.8	novel	0.50	1	1	1	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	ENSMUSG00000041540.17	Sox5	chr6	protein_coding	SRY (sex determining region Y)-box 5
novel_NIR_15900	chr6	144380216	144533472	-	144380216	144533478	A5SS	ENSMUST00000141102.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	4	0	4	0	y	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000041540.17	Sox5	chr6	protein_coding	SRY (sex determining region Y)-box 5
novel_NIR_15901	chr6	144705283	144705395	+	144673491	144705395	A5SS	ENSMUST00000155562.2	novel	1.00	5	0	5	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	ENSMUSG00000086282.2	Sox5os4	chr6	lncRNA	SRY (sex determining region Y)-box 5, opposite strand 4
novel_NIR_15902	chr6	144705287	144705395	+	144673491	144705395	A5SS	ENSMUST00000155562.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000086282.2	Sox5os4	chr6	lncRNA	SRY (sex determining region Y)-box 5, opposite strand 4
novel_NIR_15903	chr6	145157126	145160910	+	145156970	145160910	A5SS	ENSMUST00000111721.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040370.14	Etfrf1	chr6	protein_coding	electron transfer flavoprotein regulatory factor 1
novel_NIR_15904	chr6	145157126	145160910	+	145157202	145160910	A5SS	ENSMUST00000111725.8	novel	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.38	3	5	3	5	y	-	-	-	-	-	-	0.67	4	2	4	2	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000040370.14	Etfrf1	chr6	protein_coding	electron transfer flavoprotein regulatory factor 1
novel_NIR_15905	chr6	145157126	145160910	+	145160510	145160910	A5SS&ES	ENSMUST00000111723.8	novel	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.50	3	3	3	3	y	0.00	0	1	0	1	n	0.31	4	9	4	9	y	1.00	2	0	2	0	y	0.33	1	2	1	2	n	0.20	1	4	1	4	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	ENSMUSG00000040370.14	Etfrf1	chr6	protein_coding	electron transfer flavoprotein regulatory factor 1
novel_NIR_15906	chr6	145157202	145160248	+	145156970	145160248	A5SS	ENSMUST00000126007.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040370.14	Etfrf1	chr6	protein_coding	electron transfer flavoprotein regulatory factor 1
novel_NIR_15907	chr6	145157202	145160248	+	145156978	145160248	A5SS	ENSMUST00000039729.5	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.50	2	2	2	2	y	0.00	0	9	0	9	n	0.00	0	7	0	7	n	ENSMUSG00000040370.14	Etfrf1	chr6	protein_coding	electron transfer flavoprotein regulatory factor 1
novel_NIR_15908	chr6	145157202	145160248	+	145157202	145160910	A3SS	ENSMUST00000111725.8	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	2	4	2	4	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000040370.14	Etfrf1	chr6	protein_coding	electron transfer flavoprotein regulatory factor 1
novel_NIR_15909	chr6	145192542	145195306	-	145192542	145192923	A5SS&ES	ENSMUST00000155145.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030265.15	Kras	chr6	protein_coding	Kirsten rat sarcoma viral oncogene homolog
novel_NIR_15910	chr6	145692692	145696218	+	145692692	145754110	A3SS	ENSMUST00000111704.8	novel	0.09	1	10	1	10	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.08	1	12	1	12	n	0.18	6	27	6	27	y	0.12	1	7	1	7	n	0.04	1	22	1	22	n	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.11	2	17	2	17	n	0.33	2	4	2	4	y	0.05	1	19	1	19	n	ENSMUSG00000030259.13	Rassf8	chr6	protein_coding	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8
novel_NIR_15911	chr6	146197183	146198047	-	146195653	146198047	A3SS	ENSMUST00000079573.13	novel	0.00	0	17	0	17	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	16	0	16	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.11	1	8	1	8	n	0.00	0	7	0	7	n	0.00	0	18	0	18	n	0.15	2	11	2	11	y	0.06	1	15	1	15	n	ENSMUSG00000030287.16	Itpr2	chr6	protein_coding	inositol 1,4,5-triphosphate receptor 2
novel_NIR_15912	chr6	146479706	146490238	+	146489892	146490238	5pMXE	ENSMUST00000160697.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000040242.15	Fgfr1op2	chr6	protein_coding	FGFR1 oncogene partner 2
novel_NIR_15913	chr6	146491499	146496674	+	146491534	146496674	A5SS	ENSMUST00000067404.13	novel	0.00	0	39	0	39	n	0.00	0	38	0	38	n	0.00	0	41	0	41	n	0.00	0	71	0	71	n	0.16	13	68	13	68	y	0.00	0	26	0	26	n	0.00	0	90	0	90	n	0.19	4	17	4	17	y	0.00	0	51	0	51	n	0.02	2	86	2	86	n	0.00	0	48	0	48	n	0.00	0	81	0	81	n	ENSMUSG00000040242.15	Fgfr1op2	chr6	protein_coding	FGFR1 oncogene partner 2
novel_NIR_15914	chr6	146491499	146496674	+	146494245	146496674	A5SS&ES	ENSMUST00000111663.9	novel	0.00	0	19	0	19	n	0.00	0	24	0	24	n	0.00	0	62	0	62	n	0.00	0	23	0	23	n	0.19	13	56	13	56	y	0.00	0	27	0	27	n	0.00	0	40	0	40	n	0.12	4	29	4	29	n	0.00	0	24	0	24	n	0.04	2	44	2	44	n	0.00	0	29	0	29	n	0.00	0	31	0	31	n	ENSMUSG00000040242.15	Fgfr1op2	chr6	protein_coding	FGFR1 oncogene partner 2
novel_NIR_15915	chr6	146527748	146532241	-	146527748	146535884	A5SS	ENSMUST00000037709.16	novel	0.00	0	36	0	36	n	0.00	0	27	0	27	n	0.24	24	75	24	75	y	0.01	1	69	1	69	n	0.02	2	80	2	80	n	0.01	1	70	1	70	n	0.10	7	64	7	64	n	0.00	0	43	0	43	n	0.00	0	51	0	51	n	0.02	2	107	2	107	n	0.00	0	59	0	59	n	0.00	0	87	0	87	n	ENSMUSG00000040234.17	Tm7sf3	chr6	protein_coding	transmembrane 7 superfamily member 3
novel_NIR_15916	chr6	146527748	146532241	-	146527748	146544126	A5SS	ENSMUST00000138476.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	24	0	24	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	7	0	7	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040234.17	Tm7sf3	chr6	protein_coding	transmembrane 7 superfamily member 3
novel_NIR_15917	chr6	146544150	146548704	+	146544150	146549754	A3SS	ENSMUST00000134387.8	novel	1.00	4	0	4	0	y	1.00	8	0	8	0	y	1.00	5	0	5	0	y	1.00	9	0	9	0	y	1.00	6	0	6	0	y	1.00	3	0	3	0	y	1.00	10	0	10	0	y	1.00	2	0	2	0	y	1.00	10	0	10	0	y	1.00	6	0	6	0	y	1.00	8	0	8	0	y	1.00	4	0	4	0	y	ENSMUSG00000030291.13	Med21	chr6	protein_coding	mediator complex subunit 21
novel_NIR_15918	chr6	146544150	146548704	+	146544150	146550648	A3SS	ENSMUST00000125539.8	novel	1.00	4	0	4	0	y	1.00	8	0	8	0	y	0.62	5	3	5	3	y	0.90	9	1	9	1	y	0.75	6	2	6	2	y	1.00	3	0	3	0	y	0.91	10	1	10	1	y	1.00	2	0	2	0	y	1.00	10	0	10	0	y	1.00	6	0	6	0	y	0.89	8	1	8	1	y	0.57	4	3	4	3	y	ENSMUSG00000030291.13	Med21	chr6	protein_coding	mediator complex subunit 21
novel_NIR_15919	chr6	146544150	146549670	+	146544150	146549754	A3SS	ENSMUST00000134387.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000030291.13	Med21	chr6	protein_coding	mediator complex subunit 21
novel_NIR_15920	chr6	146544150	146549670	+	146544150	146550648	A3SS	ENSMUST00000125539.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.75	3	1	3	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	ENSMUSG00000030291.13	Med21	chr6	protein_coding	mediator complex subunit 21
novel_NIR_15921	chr6	146627006	146659959	+	146626545	146659959	A5SS	ENSMUST00000001675.14	novel	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.14	3	18	3	18	n	0.19	3	13	3	13	y	0.16	3	16	3	16	y	0.00	0	9	0	9	n	0.29	4	10	4	10	y	0.45	5	6	5	6	y	0.38	5	8	5	8	y	0.24	5	16	5	16	y	0.43	3	4	3	4	y	0.21	4	15	4	15	y	ENSMUSG00000001630.14	Stk38l	chr6	protein_coding	serine/threonine kinase 38 like
novel_NIR_15922	chr6	146627006	146659959	+	146627118	146659959	A5SS	ENSMUST00000203318.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	5	0	5	0	y	1.00	5	0	5	0	y	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	ENSMUSG00000001630.14	Stk38l	chr6	protein_coding	serine/threonine kinase 38 like
novel_NIR_15923	chr6	146805629	146819246	+	146790181	146819246	A5SS	ENSMUST00000203730.3	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000016487.16	Ppfibp1	chr6	protein_coding	PTPRF interacting protein, binding protein 1 (liprin beta 1)
novel_NIR_15924	chr6	146944408	146947609	+	146946140	146947609	5pMXE	ENSMUST00000137556.3	novel	-	-	-	-	-	-	1.00	5	0	5	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.83	10	2	10	2	y	ENSMUSG00000040112.10	Mrps35	chr6	protein_coding	mitochondrial ribosomal protein S35
novel_NIR_15925	chr6	147377437	147409282	+	147377393	147409282	A5SS	ENSMUST00000203659.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	4	2	4	2	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000030301.18	Ccdc91	chr6	protein_coding	coiled-coil domain containing 91
novel_NIR_15926	chr6	147438978	147476971	+	147438978	147444200	3pMXE	ENSMUST00000111614.4	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000030301.18	Ccdc91	chr6	protein_coding	coiled-coil domain containing 91
novel_NIR_15927	chr6	148084706	148085439	-	148084706	148088713	A5SS	ENSMUST00000143282.8	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	7	0	7	0	y	0.40	2	3	2	3	y	ENSMUSG00000030304.12	Ergic2	chr6	protein_coding	ERGIC and golgi 2
novel_NIR_15928	chr6	148092383	148096697	-	148092521	148096697	A3SS&ES	ENSMUST00000134574.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.80	4	1	4	1	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.60	3	2	3	2	y	ENSMUSG00000030304.12	Ergic2	chr6	protein_coding	ERGIC and golgi 2
novel_NIR_15929	chr6	148095795	148096693	-	148091082	148096693	A3SS	ENSMUST00000140311.8	novel	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	ENSMUSG00000030304.12	Ergic2	chr6	protein_coding	ERGIC and golgi 2
novel_NIR_15930	chr6	148095795	148096693	-	148092521	148096693	A3SS	ENSMUST00000145162.2	novel	0.00	0	2	0	2	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.29	2	5	2	5	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	3	0	3	n	ENSMUSG00000030304.12	Ergic2	chr6	protein_coding	ERGIC and golgi 2
novel_NIR_15931	chr6	148100894	148103994	-	148103037	148103994	3pMXE	ENSMUST00000126698.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.62	5	3	5	3	y	1.00	2	0	2	0	y	0.62	5	3	5	3	y	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	8	0	8	0	y	1.00	5	0	5	0	y	ENSMUSG00000030304.12	Ergic2	chr6	protein_coding	ERGIC and golgi 2
novel_NIR_15932	chr6	148104040	148104356	-	148104040	148108031	A5SS	ENSMUST00000032446.12	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030304.12	Ergic2	chr6	protein_coding	ERGIC and golgi 2
novel_NIR_15933	chr6	148104040	148104523	-	148104040	148108031	A5SS	ENSMUST00000032446.12	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030304.12	Ergic2	chr6	protein_coding	ERGIC and golgi 2
novel_NIR_15934	chr6	148982413	148985153	-	148982413	148986369	A5SS	ENSMUST00000127727.2	novel	0.29	5	12	5	12	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.12	3	21	3	21	n	0.15	6	33	6	33	n	0.06	1	17	1	17	n	0.16	3	16	3	16	n	0.18	3	14	3	14	n	0.09	1	10	1	10	n	0.14	3	18	3	18	n	0.00	0	12	0	12	n	0.21	3	11	3	11	y	ENSMUSG00000030313.16	Dennd5b	chr6	protein_coding	DENN/MADD domain containing 5B
novel_NIR_15935	chr6	148982413	148985153	-	148982413	149002681	A5SS	ENSMUST00000111557.8	novel	0.71	5	2	5	2	y	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	3	0	3	0	y	1.00	6	0	6	0	y	0.33	1	2	1	2	n	1.00	3	0	3	0	y	0.75	3	1	3	1	y	1.00	1	0	1	0	n	0.43	3	4	3	4	y	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000030313.16	Dennd5b	chr6	protein_coding	DENN/MADD domain containing 5B
novel_NIR_15936	chr6	148982413;148985195	148985153;148986369	-	148982413	148986369	cassetteExon	ENSMUST00000127727.2	novel	0.23	3.5	12	5;2	12	y	0.00	0.0	6	0;0	6	n	0.11	1.5	12	0;3	12	n	0.12	3.0	21	3;3	21	n	0.14	5.5	33	6;5	33	n	0.06	1.0	17	1;1	17	n	0.16	3.0	16	3;3	16	y	0.18	3.0	14	3;3	14	y	0.13	1.5	10	1;2	10	n	0.10	2.0	18	3;1	18	n	0.08	1.0	12	0;2	12	n	0.12	1.5	11	3;0	11	n	ENSMUSG00000030313.16	Dennd5b	chr6	protein_coding	DENN/MADD domain containing 5B
novel_NIR_15937	chr6	148985195	148986369	-	148982413	148986369	A3SS	ENSMUST00000127727.2	novel	0.14	2	12	2	12	n	0.00	0	6	0	6	n	0.20	3	12	3	12	y	0.12	3	21	3	21	n	0.13	5	33	5	33	n	0.06	1	17	1	17	n	0.16	3	16	3	16	n	0.18	3	14	3	14	n	0.17	2	10	2	10	n	0.05	1	18	1	18	n	0.14	2	12	2	12	n	0.00	0	11	0	11	n	ENSMUSG00000030313.16	Dennd5b	chr6	protein_coding	DENN/MADD domain containing 5B
novel_NIR_15938	chr6	149043202	149045534	+	149043202	149045513	A3SS	ENSMUST00000179873.8	novel	0.33	1	2	1	2	n	0.67	2	1	2	1	y	0.67	2	1	2	1	y	0.00	0	4	0	4	n	0.50	5	5	5	5	y	1.00	2	0	2	0	y	0.50	3	3	3	3	y	0.75	3	1	3	1	y	0.00	0	1	0	1	n	0.64	7	4	7	4	y	0.50	1	1	1	1	n	0.50	1	1	1	1	n	ENSMUSG00000039958.18	Etfbkmt	chr6	protein_coding	electron transfer flavoprotein beta subunit lysine methyltransferase
novel_NIR_15939	chr6	149043202	149045534	+	149043202	149048656	A3SS	ENSMUST00000147934.4	novel	0.33	1	2	1	2	n	0.33	2	4	2	4	y	0.67	2	1	2	1	y	0.00	0	3	0	3	n	0.50	5	5	5	5	y	0.50	2	2	2	2	y	0.30	3	7	3	7	n	0.25	3	9	3	9	y	0.00	0	8	0	8	n	0.37	7	12	7	12	y	0.25	1	3	1	3	n	0.10	1	9	1	9	n	ENSMUSG00000039958.18	Etfbkmt	chr6	protein_coding	electron transfer flavoprotein beta subunit lysine methyltransferase
novel_NIR_15940	chr6	149043202	149045540	+	149043202	149044104	A3SS&ES	ENSMUST00000111548.8	novel	0.00	0	73	0	73	n	0.00	0	90	0	90	n	0.00	0	260	0	260	n	0.00	0	95	0	95	n	0.00	0	178	0	178	n	0.15	20	114	20	114	y	0.00	0	157	0	157	n	0.00	0	115	0	115	n	0.00	0	65	0	65	n	0.00	0	140	0	140	n	0.00	0	91	0	91	n	0.00	0	160	0	160	n	ENSMUSG00000039958.18	Etfbkmt	chr6	protein_coding	electron transfer flavoprotein beta subunit lysine methyltransferase
novel_NIR_15941	chr6	149043202	149045540	+	149043202	149045513	A3SS	ENSMUST00000179873.8	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	1.00	20	0	20	0	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000039958.18	Etfbkmt	chr6	protein_coding	electron transfer flavoprotein beta subunit lysine methyltransferase
novel_NIR_15942	chr6	149043202	149045540	+	149043202	149045532	A3SS	ENSMUST00000047531.16	novel	0.00	0	33	0	33	n	0.00	0	35	0	35	n	0.00	0	68	0	68	n	0.00	0	50	0	50	n	0.00	0	88	0	88	n	0.27	20	54	20	54	y	0.00	0	66	0	66	n	0.00	0	69	0	69	n	0.00	0	40	0	40	n	0.00	0	49	0	49	n	0.00	0	32	0	32	n	0.00	0	57	0	57	n	ENSMUSG00000039958.18	Etfbkmt	chr6	protein_coding	electron transfer flavoprotein beta subunit lysine methyltransferase
novel_NIR_15943	chr6	149043202	149045540	+	149043202	149048656	A3SS	ENSMUST00000147934.4	novel	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.91	20	2	20	2	y	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	ENSMUSG00000039958.18	Etfbkmt	chr6	protein_coding	electron transfer flavoprotein beta subunit lysine methyltransferase
novel_NIR_15944	chr6	149044213	149045534	+	149044213	149045513	A3SS	ENSMUST00000111551.2	novel	0.67	2	1	2	1	y	0.00	0	4	0	4	n	0.67	12	6	12	6	y	0.56	5	4	5	4	y	0.67	8	4	8	4	y	0.75	3	1	3	1	y	0.53	8	7	8	7	y	0.20	2	8	2	8	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.86	6	1	6	1	y	ENSMUSG00000039958.18	Etfbkmt	chr6	protein_coding	electron transfer flavoprotein beta subunit lysine methyltransferase
novel_NIR_15945	chr6	149072548	149081046	-	149072548	149089734	A5SS	ENSMUST00000150610.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000068250.14	Amn1	chr6	protein_coding	antagonist of mitotic exit network 1
novel_NIR_15946	chr6	149072548	149081046	-	149072548	149090104	A5SS	ENSMUST00000204681.3	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.29	2	5	2	5	y	0.25	2	6	2	6	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	ENSMUSG00000068250.14	Amn1	chr6	protein_coding	antagonist of mitotic exit network 1
novel_NIR_15947	chr6	149072548	149084964	-	149072548	149089734	A5SS	ENSMUST00000150610.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000068250.14	Amn1	chr6	protein_coding	antagonist of mitotic exit network 1
novel_NIR_15948	chr6	149072548	149084964	-	149072548	149090104	A5SS	ENSMUST00000204681.3	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.43	3	4	3	4	y	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.33	2	4	2	4	y	0.14	1	6	1	6	n	ENSMUSG00000068250.14	Amn1	chr6	protein_coding	antagonist of mitotic exit network 1
novel_NIR_15949	chr6	149211857	149219133	+	149211857	149226903	A3SS	ENSMUST00000189932.7	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032712.17	Resf1	chr6	protein_coding	retroelement silencing factor 1
novel_NIR_15950	chr6	149211857	149219133	+	149211875	149219133	A5SS	ENSMUST00000130664.8	novel	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.18	2	9	2	9	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000032712.17	Resf1	chr6	protein_coding	retroelement silencing factor 1
novel_NIR_15951	chr6	15721363	15740990	+	15721363	15729014	A3SS&ES	ENSMUST00000140516.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041390.19	Mdfic	chr6	protein_coding	MyoD family inhibitor domain containing
novel_NIR_15952	chr6	15738582	15740990	+	15738582	15740987	A3SS	ENSMUST00000140516.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000041390.19	Mdfic	chr6	protein_coding	MyoD family inhibitor domain containing
novel_NIR_15953	chr6	16840543	16844190	-	16840543	16844194	A5SS	ENSMUST00000031533.11	novel	0.25	2	6	2	6	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.14	1	6	1	6	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000029553.11	Tfec	chr6	protein_coding	transcription factor EC
novel_NIR_15954	chr6	16840543	16845363	-	16840543;16844250	16844194;16845363	ES	ENSMUST00000031533.11	novel	0.00	0	8.0	0	6;10	n	0.00	0	4.5	0	4;5	n	0.22	1	3.5	1	2;5	n	0.00	0	3.5	0	2;5	n	0.38	3	5.0	3	6;4	y	0.00	0	2.0	0	2;2	n	0.00	0	2.0	0	2;2	n	-	-	-	-	-	-	0.00	0	2.0	0	1;3	n	1.00	3	0.0	3	0;0	y	0.00	0	3.0	0	2;4	n	0.00	0	1.5	0	1;2	n	ENSMUSG00000029553.11	Tfec	chr6	protein_coding	transcription factor EC
novel_NIR_15955	chr6	16840543	16845363	-	16844250	16845363	A3SS&ES	ENSMUST00000202997.2	novel	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.43	3	4	3	4	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	3	0	3	0	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000029553.11	Tfec	chr6	protein_coding	transcription factor EC
novel_NIR_15956	chr6	16845477	16867651	-	16845477	16867459	A5SS	ENSMUST00000031533.11	novel	0.00	0	7	0	7	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.40	2	3	2	3	y	ENSMUSG00000029553.11	Tfec	chr6	protein_coding	transcription factor EC
novel_NIR_15957	chr6	17464139	17465176	+	17464139	17487796	A3SS	ENSMUST00000140070.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	14	0	14	n	0.00	0	1	0	1	n	0.30	3	7	3	7	y	ENSMUSG00000009376.16	Met	chr6	protein_coding	met proto-oncogene
novel_NIR_15958	chr6	17464139	17465176	+	17464139	17491226	A3SS	ENSMUST00000115442.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000009376.16	Met	chr6	protein_coding	met proto-oncogene
novel_NIR_15959	chr6	17464247	17487680	+	17464247	17487796	A3SS	ENSMUST00000115443.8	novel	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	34	0	34	n	0.00	0	48	0	48	n	0.02	1	60	1	60	n	0.00	0	14	0	14	n	0.00	0	42	0	42	n	0.00	0	40	0	40	n	0.15	2	11	2	11	y	0.00	0	47	0	47	n	0.00	0	19	0	19	n	0.00	0	31	0	31	n	ENSMUSG00000009376.16	Met	chr6	protein_coding	met proto-oncogene
novel_NIR_15960	chr6	17657251	17659398	+	17657251	17660728	A3SS	ENSMUST00000130606.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000015733.14	Capza2	chr6	protein_coding	capping protein (actin filament) muscle Z-line, alpha 2
novel_NIR_15961	chr6	21851144	21851559	-	21851144	21851825	A5SS	ENSMUST00000134635.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000029669.15	Tspan12	chr6	protein_coding	tetraspanin 12
novel_NIR_15962	chr6	21851144	21851559	-	21851144	21851936	A5SS	ENSMUST00000123116.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000029669.15	Tspan12	chr6	protein_coding	tetraspanin 12
novel_NIR_15963	chr6	21852166	21852435	-	21852166	21852405	A5SS	ENSMUST00000031678.10	novel	0.34	22	42	22	42	y	0.20	11	45	11	45	y	0.16	10	53	10	53	y	0.24	25	78	25	78	y	0.28	36	92	36	92	y	0.20	7	28	7	28	y	0.25	30	90	30	90	y	0.37	30	51	30	51	y	0.34	23	44	23	44	y	0.32	47	100	47	100	y	0.24	19	59	19	59	y	0.29	34	82	34	82	y	ENSMUSG00000029669.15	Tspan12	chr6	protein_coding	tetraspanin 12
novel_NIR_15964	chr6	21852512	21853268	+	21852725	21853268	A5SS	ENSMUST00000202675.2	novel	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	3	3	3	3	y	0.25	1	3	1	3	n	1.00	1	0	1	0	n	ENSMUSG00000106709.2	Gm30270	chr6	lncRNA	predicted gene, 30270
novel_NIR_15965	chr6	21852729	21853268	+	21852725	21853268	A5SS	ENSMUST00000202675.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000106709.2	Gm30270	chr6	lncRNA	predicted gene, 30270
novel_NIR_15966	chr6	21967697	21968920	+	21967697	21968884	A3SS	ENSMUST00000031680.10	novel	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.00	0	15	0	15	n	0.00	0	8	0	8	n	0.00	0	15	0	15	n	0.00	0	4	0	4	n	0.00	0	18	0	18	n	0.17	2	10	2	10	y	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.00	0	8	0	8	n	0.00	0	27	0	27	n	ENSMUSG00000029670.13	Ing3	chr6	protein_coding	inhibitor of growth family, member 3
novel_NIR_15967	chr6	21967697	21968920	+	21967697	21968917	A3SS	ENSMUST00000144534.8	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000029670.13	Ing3	chr6	protein_coding	inhibitor of growth family, member 3
novel_NIR_15968	chr6	21987058	21990023	+	21987058	22009024	A3SS	ENSMUST00000141064.2	novel	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000062980.16	Cped1	chr6	protein_coding	cadherin-like and PC-esterase domain containing 1
novel_NIR_15969	chr6	22237741	22237862	+	22237741	22239963	A3SS	ENSMUST00000137437.6	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000062980.16	Cped1	chr6	protein_coding	cadherin-like and PC-esterase domain containing 1
novel_NIR_15970	chr6	22237741	22254469	+	22237741	22239963	3pMXE	ENSMUST00000137437.6	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	9	0	9	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000062980.16	Cped1	chr6	protein_coding	cadherin-like and PC-esterase domain containing 1
novel_NIR_15971	chr6	22343318	22343549	-	22343318	22343665	A5SS	ENSMUST00000168965.3	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.80	4	1	4	1	y	0.11	1	8	1	8	n	0.29	2	5	2	5	y	1.00	1	0	1	0	n	0.25	1	3	1	3	n	0.20	1	4	1	4	n	0.33	2	4	2	4	y	0.25	2	6	2	6	y	0.00	0	6	0	6	n	0.29	5	12	5	12	y	ENSMUSG00000029672.17	Fam3c	chr6	protein_coding	family with sequence similarity 3, member C
novel_NIR_15972	chr6	22343318	22343549	-	22343318	22355013	A5SS	ENSMUST00000163963.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	ENSMUSG00000029672.17	Fam3c	chr6	protein_coding	family with sequence similarity 3, member C
novel_NIR_15973	chr6	23096888	23097142	-	23094310	23097142	A3SS	ENSMUST00000149864.2	novel	0.11	1	8	1	8	n	0.20	2	8	2	8	y	0.33	1	2	1	2	n	0.20	4	16	4	16	y	0.38	5	8	5	8	y	-	-	-	-	-	-	0.19	3	13	3	13	y	0.50	3	3	3	3	y	0.00	0	7	0	7	n	0.26	5	14	5	14	y	0.00	0	6	0	6	n	0.40	8	12	8	12	y	ENSMUSG00000029695.14	Aass	chr6	protein_coding	aminoadipate-semialdehyde synthase
novel_NIR_15974	chr6	23097201	23097968	-	23097201	23127496	A5SS	ENSMUST00000138063.2	novel	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029695.14	Aass	chr6	protein_coding	aminoadipate-semialdehyde synthase
novel_NIR_15975	chr6	23097201	23132880	-	23097201	23127496	5pMXE	ENSMUST00000138063.2	novel	1.00	31	0	31	0	y	1.00	21	0	21	0	y	1.00	25	0	25	0	y	1.00	47	0	47	0	y	1.00	33	0	33	0	y	1.00	21	0	21	0	y	1.00	41	0	41	0	y	1.00	22	0	22	0	y	1.00	18	0	18	0	y	1.00	47	0	47	0	y	1.00	25	0	25	0	y	1.00	54	0	54	0	y	ENSMUSG00000029695.14	Aass	chr6	protein_coding	aminoadipate-semialdehyde synthase
novel_NIR_15976	chr6	23115154	23132880	-	23121052	23132880	A3SS&ES	ENSMUST00000152280.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029695.14	Aass	chr6	protein_coding	aminoadipate-semialdehyde synthase
novel_NIR_15977	chr6	23263715	23269192	-	23263715	23269245	A5SS	ENSMUST00000166458.9	novel	0.00	0	37	0	37	n	0.06	2	33	2	33	n	0.17	5	24	5	24	y	0.05	2	37	2	37	n	0.00	0	35	0	35	n	0.00	0	24	0	24	n	0.00	0	39	0	39	n	0.00	0	31	0	31	n	0.00	0	22	0	22	n	0.04	2	45	2	45	n	0.00	0	31	0	31	n	0.00	0	35	0	35	n	ENSMUSG00000017978.19	Cadps2	chr6	protein_coding	Ca2+-dependent activator protein for secretion 2
novel_NIR_15978	chr6	23329160	23382880	-	23329160	23355823	5pMXE	ENSMUST00000156986.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000017978.19	Cadps2	chr6	protein_coding	Ca2+-dependent activator protein for secretion 2
novel_NIR_15979	chr6	23833714	23838789	-	23688959	23838789	A3SS	ENSMUST00000166458.9	novel	0.00	0	6	0	6	n	0.17	2	10	2	10	y	0.03	1	28	1	28	n	0.16	4	21	4	21	y	0.07	2	27	2	27	n	0.13	2	13	2	13	n	0.20	4	16	4	16	y	0.05	1	18	1	18	n	0.12	2	14	2	14	n	0.11	2	17	2	17	n	0.00	0	12	0	12	n	0.06	1	15	1	15	n	ENSMUSG00000017978.19	Cadps2	chr6	protein_coding	Ca2+-dependent activator protein for secretion 2
novel_NIR_15980	chr6	24556399	24556505	+	24528268	24556505	A5SS	ENSMUST00000031696.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029685.16	Asb15	chr6	protein_coding	ankyrin repeat and SOCS box-containing 15
novel_NIR_15981	chr6	24556399	24556505	+	24556299	24556505	A5SS	ENSMUST00000117688.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029685.16	Asb15	chr6	protein_coding	ankyrin repeat and SOCS box-containing 15
novel_NIR_15982	chr6	25744692	25745894	-	25744692	25745890	A5SS	ENSMUST00000115330.8	novel	0.00	0	5	0	5	n	0.08	1	11	1	11	n	0.00	0	17	0	17	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.20	2	8	2	8	y	0.00	0	13	0	13	n	0.00	0	25	0	25	n	0.00	0	11	0	11	n	0.13	2	13	2	13	n	ENSMUSG00000029676.16	Pot1a	chr6	protein_coding	protection of telomeres 1A
novel_NIR_15983	chr6	29155188	29156294	-	29155188	29157067	A5SS	ENSMUST00000007993.16	novel	0.00	0	14	0	14	n	0.00	0	18	0	18	n	0.03	1	36	1	36	n	0.00	0	28	0	28	n	0.09	4	42	4	42	n	0.00	0	26	0	26	n	0.04	1	24	1	24	n	0.00	0	17	0	17	n	0.21	5	19	5	19	y	0.08	2	22	2	22	n	0.00	0	16	0	16	n	0.14	6	36	6	36	n	ENSMUSG00000029701.16	Rbm28	chr6	protein_coding	RNA binding motif protein 28
novel_NIR_15984	chr6	29467828	29470066	+	29468166	29470066	5pMXE	ENSMUST00000143101.4	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	1.00	3	0	3	0	y	ENSMUSG00000004285.13	Atp6v1f	chr6	protein_coding	ATPase, H+ transporting, lysosomal V1 subunit F
novel_NIR_15985	chr6	29493330	29495757	-	29493364	29495757	A3SS	ENSMUST00000159479.8	novel	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.40	4	6	4	6	y	0.14	1	6	1	6	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.09	1	10	1	10	n	0.00	0	7	0	7	n	0.17	1	5	1	5	n	0.00	0	12	0	12	n	ENSMUSG00000059022.16	Kcp	chr6	protein_coding	kielin/chordin-like protein
novel_NIR_15986	chr6	29498882	29498956	-	29498513	29498956	A3SS	ENSMUST00000160181.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000059022.16	Kcp	chr6	protein_coding	kielin/chordin-like protein
novel_NIR_15987	chr6	29498882	29498956	-	29498879	29498956	A3SS	ENSMUST00000091391.11	novel	0.29	2	5	2	5	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	ENSMUSG00000059022.16	Kcp	chr6	protein_coding	kielin/chordin-like protein
novel_NIR_15988	chr6	29502377	29502584	-	29502382	29502584	A3SS	ENSMUST00000091391.11	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.20	2	8	2	8	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	ENSMUSG00000059022.16	Kcp	chr6	protein_coding	kielin/chordin-like protein
novel_NIR_15989	chr6	29502666	29504232	-	29502666	29502777	5pMXE	ENSMUST00000160181.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.25	2	6	2	6	y	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	ENSMUSG00000059022.16	Kcp	chr6	protein_coding	kielin/chordin-like protein
novel_NIR_15990	chr6	29502666	29504232	-	29502666;29502873	29502777;29504232	ES	ENSMUST00000091391.11	novel	0.00	0	3.0	0	3;3	n	0.00	0	1.0	0	0;2	n	0.00	0	2.5	0	1;4	n	0.40	2	3.0	2	6;0	y	0.00	0	4.5	0	7;2	n	0.00	0	2.0	0	1;3	n	0.00	0	2.0	0	3;1	n	0.00	0	1.0	0	0;2	n	0.00	0	1.5	0	1;2	n	0.00	0	5.5	0	6;5	n	0.00	0	1.5	0	2;1	n	0.00	0	8.0	0	7;9	n	ENSMUSG00000059022.16	Kcp	chr6	protein_coding	kielin/chordin-like protein
novel_NIR_15991	chr6	29502666	29504232	-	29502666;29502974	29502777;29504232	ES	ENSMUST00000161237.2	novel	0.00	0	1.5	0	3;0	n	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	0.40	2	3.0	2	6;0	y	0.00	0	3.5	0	7;0	n	0.00	0	0.5	0	1;0	n	0.00	0	2.0	0	3;1	n	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	0.00	0	3.0	0	6;0	n	0.00	0	1.0	0	2;0	n	0.00	0	3.5	0	7;0	n	ENSMUSG00000059022.16	Kcp	chr6	protein_coding	kielin/chordin-like protein
novel_NIR_15992	chr6	29505800	29509838	-	29505800	29507856	5pMXE	ENSMUST00000091391.11	novel	0.00	0	8	0	8	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000059022.16	Kcp	chr6	protein_coding	kielin/chordin-like protein
novel_NIR_15993	chr6	29526445	29531125	+	29526773	29531125	5pMXE	ENSMUST00000004392.12	novel	0.08	1	11	1	11	n	0.14	1	6	1	6	n	0.00	0	3	0	3	n	0.00	0	15	0	15	n	0.05	1	19	1	19	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.08	1	11	1	11	n	0.00	0	28	0	28	n	0.40	2	3	2	3	y	0.17	5	24	5	24	y	ENSMUSG00000029771.13	Irf5	chr6	protein_coding	interferon regulatory factor 5
novel_NIR_15994	chr6	29526445	29531125	+	29528366	29531125	5pMXE	ENSMUST00000164626.8	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	5	0	5	0	y	ENSMUSG00000029771.13	Irf5	chr6	protein_coding	interferon regulatory factor 5
novel_NIR_15995	chr6	29526445	29531125	+	29529482	29531125	5pMXE	ENSMUST00000163511.7	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	5	0	5	0	y	ENSMUSG00000029771.13	Irf5	chr6	protein_coding	interferon regulatory factor 5
novel_NIR_15996	chr6	29536649	29537506	+	29536649	29541615	A3SS	ENSMUST00000167252.5	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.80	4	1	4	1	y	0.33	1	2	1	2	n	ENSMUSG00000029771.13	Irf5	chr6	protein_coding	interferon regulatory factor 5
novel_NIR_15997	chr6	29709997	29710592	+	29709997	29710589	A3SS	ENSMUST00000115250.4	novel	0.00	0	26	0	26	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.25	5	15	5	15	y	0.00	0	18	0	18	n	0.00	0	4	0	4	n	0.00	0	23	0	23	n	0.09	1	10	1	10	n	0.00	0	14	0	14	n	0.00	0	20	0	20	n	0.00	0	14	0	14	n	0.09	2	21	2	21	n	ENSMUSG00000001763.15	Tspan33	chr6	protein_coding	tetraspanin 33
novel_NIR_15998	chr6	29768335	29768549	+	29768316	29768549	A5SS	ENSMUST00000136031.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029772.18	Ahcyl2	chr6	protein_coding	S-adenosylhomocysteine hydrolase-like 2
novel_NIR_15999	chr6	29871252	29878528	+	29871285	29878528	A5SS	ENSMUST00000102995.9	novel	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.05	1	20	1	20	n	0.00	0	15	0	15	n	0.03	1	33	1	33	n	0.00	0	8	0	8	n	0.07	1	14	1	14	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.21	3	11	3	11	y	0.00	0	9	0	9	n	0.00	0	12	0	12	n	ENSMUSG00000029772.18	Ahcyl2	chr6	protein_coding	S-adenosylhomocysteine hydrolase-like 2
novel_NIR_16000	chr6	30497992	30505732	-	30497992;30502101	30501900;30505732	ES	ENSMUST00000151187.8	novel	0.08	1	11.0	1	9;13	n	0.08	1	11.0	1	14;8	n	0.00	0	24.5	0	28;21	n	0.00	0	20.0	0	16;24	n	0.00	0	25.0	0	22;28	n	0.00	0	14.5	0	20;9	n	0.00	0	18.5	0	13;24	n	0.00	0	12.5	0	16;9	n	0.00	0	13.0	0	15;11	n	0.06	1	17.0	1	17;17	n	0.22	4	14.0	4	15;13	y	0.00	0	14.5	0	14;15	n	ENSMUSG00000029782.21	Tmem209	chr6	protein_coding	transmembrane protein 209
novel_NIR_16001	chr6	30497992	30505732	-	30502101	30505732	3pMXE	ENSMUST00000154547.3	novel	0.07	1	13	1	13	n	0.11	1	8	1	8	n	0.00	0	21	0	21	n	0.00	0	24	0	24	n	0.00	0	28	0	28	n	0.00	0	9	0	9	n	0.00	0	24	0	24	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.06	1	17	1	17	n	0.24	4	13	4	13	y	0.00	0	15	0	15	n	ENSMUSG00000029782.21	Tmem209	chr6	protein_coding	transmembrane protein 209
novel_NIR_16002	chr6	30508801	30509505	-	30508801	30509684	A5SS	ENSMUST00000151187.8	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.33	2	4	2	4	y	0.00	0	5	0	5	n	0.00	0	3	0	3	n	ENSMUSG00000029782.21	Tmem209	chr6	protein_coding	transmembrane protein 209
novel_NIR_16003	chr6	30671369	30673310	-	30671369	30680130	A5SS	ENSMUST00000031810.15	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.30	3	7	3	7	y	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	ENSMUSG00000029790.17	Cep41	chr6	protein_coding	centrosomal protein 41
novel_NIR_16004	chr6	30872529	30872994	-	30872529	30872999	A5SS	ENSMUST00000151973.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000025607.16	Copg2	chr6	protein_coding	coatomer protein complex, subunit gamma 2
novel_NIR_16005	chr6	30872529	30872994	-	30872529	30873302	A5SS	ENSMUST00000122833.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000025607.16	Copg2	chr6	protein_coding	coatomer protein complex, subunit gamma 2
novel_NIR_16006	chr6	30872529	30873320	-	30872529	30872999	A5SS&ES	ENSMUST00000151973.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000025607.16	Copg2	chr6	protein_coding	coatomer protein complex, subunit gamma 2
novel_NIR_16007	chr6	30872529	30873320	-	30872529	30873302	A5SS	ENSMUST00000122833.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000025607.16	Copg2	chr6	protein_coding	coatomer protein complex, subunit gamma 2
novel_NIR_16008	chr6	31070530	31089662	-	31070530	31116664	A5SS	ENSMUST00000229711.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000044471.13	Lncpint	chr6	lncRNA	long non-protein coding RNA, Trp53 induced transcript
novel_NIR_16009	chr6	31197454	31221219	+	31197454	31221040	A3SS	ENSMUST00000155345.8	novel	0.00	0	7	0	7	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.12	1	7	1	7	n	0.17	1	5	1	5	n	0.00	0	1	0	1	n	0.00	0	18	0	18	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.18	3	14	3	14	y	0.00	0	8	0	8	n	0.31	4	9	4	9	y	ENSMUSG00000087380.8	2210408F21Rik	chr6	lncRNA	RIKEN cDNA 2210408F21 gene
novel_NIR_16010	chr6	31197454	31221219	+	31197454	31226753	A3SS	ENSMUST00000146778.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000087380.8	2210408F21Rik	chr6	lncRNA	RIKEN cDNA 2210408F21 gene
novel_NIR_16011	chr6	31197454	31221219	+	31197454	31261938	A3SS	ENSMUST00000139444.8	novel	-	-	-	-	-	-	0.00	0	6	0	6	n	0.25	1	3	1	3	n	0.50	1	1	1	1	n	0.33	1	2	1	2	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.50	3	3	3	3	y	0.00	0	4	0	4	n	0.57	4	3	4	3	y	ENSMUSG00000087380.8	2210408F21Rik	chr6	lncRNA	RIKEN cDNA 2210408F21 gene
novel_NIR_16012	chr6	31197454	31221219	+	31197454	31305224	A3SS	ENSMUST00000152157.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000087380.8	2210408F21Rik	chr6	lncRNA	RIKEN cDNA 2210408F21 gene
novel_NIR_16013	chr6	31254890	31305224	+	31197454	31305224	A5SS	ENSMUST00000152157.8	novel	1.00	2	0	2	0	y	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000087380.8	2210408F21Rik	chr6	lncRNA	RIKEN cDNA 2210408F21 gene
novel_NIR_16014	chr6	31254890	31305224	+	31254890	31305267	A3SS	ENSMUST00000144612.8	novel	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000087380.8	2210408F21Rik	chr6	lncRNA	RIKEN cDNA 2210408F21 gene
novel_NIR_16015	chr6	31254890	31305224	+	31254890	31312926	A3SS	ENSMUST00000136571.8	novel	0.29	2	5	2	5	y	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.43	3	4	3	4	y	0.17	2	10	2	10	y	0.00	0	4	0	4	n	0.38	3	5	3	5	y	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.40	2	3	2	3	y	0.17	1	5	1	5	n	0.25	1	3	1	3	n	ENSMUSG00000087380.8	2210408F21Rik	chr6	lncRNA	RIKEN cDNA 2210408F21 gene
novel_NIR_16016	chr6	31254890	31305224	+	31298989	31305224	5pMXE	ENSMUST00000124811.2	novel	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000087380.8	2210408F21Rik	chr6	lncRNA	RIKEN cDNA 2210408F21 gene
novel_NIR_16017	chr6	31262055	31270271	+	31262055	31269953	3pMXE	ENSMUST00000133510.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000087380.8	2210408F21Rik	chr6	lncRNA	RIKEN cDNA 2210408F21 gene
novel_NIR_16018	chr6	31262055	31298325	+	31262055	31269953	3pMXE	ENSMUST00000133510.2	novel	1.00	5	0	5	0	y	1.00	2	0	2	0	y	0.50	3	3	3	3	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	ENSMUSG00000087380.8	2210408F21Rik	chr6	lncRNA	RIKEN cDNA 2210408F21 gene
novel_NIR_16019	chr6	31262055	31298325	+	31262055	31312926	A3SS	ENSMUST00000139444.8	novel	0.38	5	8	5	8	y	0.18	2	9	2	9	y	0.10	3	28	3	28	n	0.33	3	6	3	6	y	0.10	2	19	2	19	n	0.00	0	17	0	17	n	0.00	0	19	0	19	n	0.09	1	10	1	10	n	0.00	0	14	0	14	n	0.13	3	20	3	20	n	0.05	1	20	1	20	n	0.15	3	17	3	17	y	ENSMUSG00000087380.8	2210408F21Rik	chr6	lncRNA	RIKEN cDNA 2210408F21 gene
novel_NIR_16020	chr6	31262055	31305267	+	31254890	31305267	A5SS	ENSMUST00000144612.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000087380.8	2210408F21Rik	chr6	lncRNA	RIKEN cDNA 2210408F21 gene
novel_NIR_16021	chr6	31262055	31305267	+	31262055	31269953	3pMXE	ENSMUST00000133510.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.25	1	3	1	3	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000087380.8	2210408F21Rik	chr6	lncRNA	RIKEN cDNA 2210408F21 gene
novel_NIR_16022	chr6	31262055	31305267	+	31262055	31312926	A3SS	ENSMUST00000139444.8	novel	0.00	0	8	0	8	n	0.18	2	9	2	9	y	0.03	1	28	1	28	n	0.14	1	6	1	6	n	0.05	1	19	1	19	n	0.00	0	17	0	17	n	0.00	0	19	0	19	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	20	0	20	n	0.00	0	20	0	20	n	0.00	0	17	0	17	n	ENSMUSG00000087380.8	2210408F21Rik	chr6	lncRNA	RIKEN cDNA 2210408F21 gene
novel_NIR_16023	chr6	31295070	31305224	+	31197454	31305224	A5SS	ENSMUST00000152157.8	novel	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000087380.8	2210408F21Rik	chr6	lncRNA	RIKEN cDNA 2210408F21 gene
novel_NIR_16024	chr6	31295070	31305224	+	31298989	31305224	5pMXE	ENSMUST00000124811.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000087380.8	2210408F21Rik	chr6	lncRNA	RIKEN cDNA 2210408F21 gene
novel_NIR_16025	chr6	31298411	31305267	+	31254890	31305267	A5SS	ENSMUST00000144612.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000087380.8	2210408F21Rik	chr6	lncRNA	RIKEN cDNA 2210408F21 gene
novel_NIR_16026	chr6	31304029	31305224	+	31197454	31305224	A5SS	ENSMUST00000152157.8	novel	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000087380.8	2210408F21Rik	chr6	lncRNA	RIKEN cDNA 2210408F21 gene
novel_NIR_16027	chr6	31304029	31305224	+	31298989	31305224	A5SS	ENSMUST00000124811.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000087380.8	2210408F21Rik	chr6	lncRNA	RIKEN cDNA 2210408F21 gene
novel_NIR_16028	chr6	31305295	31308175	+	31305295	31312926	A3SS	ENSMUST00000144612.8	novel	0.00	0	30	0	30	n	0.02	1	47	1	47	n	0.00	0	18	0	18	n	0.13	4	27	4	27	n	0.03	1	39	1	39	n	0.00	0	22	0	22	n	0.03	1	35	1	35	n	0.00	0	23	0	23	n	0.00	0	14	0	14	n	0.17	8	40	8	40	y	0.06	3	44	3	44	n	0.00	0	46	0	46	n	ENSMUSG00000087380.8	2210408F21Rik	chr6	lncRNA	RIKEN cDNA 2210408F21 gene
novel_NIR_16029	chr6	31312997	31313710	+	31312997	31314146	A3SS	ENSMUST00000146778.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000087380.8	2210408F21Rik	chr6	lncRNA	RIKEN cDNA 2210408F21 gene
novel_NIR_16030	chr6	31344527	31347349	-	31344527	31372633	A5SS	ENSMUST00000144232.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000086212.8	Mkln1os	chr6	lncRNA	muskelin 1, intracellular mediator containing kelch motifs, opposite strand
novel_NIR_16031	chr6	31408184	31409886	+	31408184	31409871	A3SS	ENSMUST00000154954.8	novel	1.00	4	0	4	0	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000025609.16	Mkln1	chr6	protein_coding	muskelin 1, intracellular mediator containing kelch motifs
novel_NIR_16032	chr6	31428519	31435892	+	31428519	31445066	A3SS	ENSMUST00000134315.8	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.62	8	5	8	5	y	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000025609.16	Mkln1	chr6	protein_coding	muskelin 1, intracellular mediator containing kelch motifs
novel_NIR_16033	chr6	31444571	31445066	+	31428519	31445066	A5SS	ENSMUST00000134315.8	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.67	2	1	2	1	y	-	-	-	-	-	-	ENSMUSG00000025609.16	Mkln1	chr6	protein_coding	muskelin 1, intracellular mediator containing kelch motifs
novel_NIR_16034	chr6	31473706	31473983	+	31473706	31484560	A3SS	ENSMUST00000130108.3	novel	0.00	0	4	0	4	n	0.17	2	10	2	10	y	0.08	1	12	1	12	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.43	3	4	3	4	y	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	ENSMUSG00000025609.16	Mkln1	chr6	protein_coding	muskelin 1, intracellular mediator containing kelch motifs
novel_NIR_16035	chr6	32488380	32490838	+	32488380	32490908	A3SS	ENSMUST00000150314.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000086763.2	Plxna4os1	chr6	lncRNA	plexin A4, opposite strand 1
novel_NIR_16036	chr6	32780960	32794563	-	32780960	32796503	A5SS	ENSMUST00000140446.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000053768.14	Chchd3	chr6	protein_coding	coiled-coil-helix-coiled-coil-helix domain containing 3
novel_NIR_16037	chr6	32780960	32801281	-	32780960	32796503	5pMXE	ENSMUST00000140446.2	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000053768.14	Chchd3	chr6	protein_coding	coiled-coil-helix-coiled-coil-helix domain containing 3
novel_NIR_16038	chr6	32780960	32816479	-	32780960	32796503	5pMXE	ENSMUST00000140446.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000053768.14	Chchd3	chr6	protein_coding	coiled-coil-helix-coiled-coil-helix domain containing 3
novel_NIR_16039	chr6	32780960	32869227	-	32780960	32796503	5pMXE	ENSMUST00000140446.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000053768.14	Chchd3	chr6	protein_coding	coiled-coil-helix-coiled-coil-helix domain containing 3
novel_NIR_16040	chr6	32869310	32985418	-	32869310	32873927	5pMXE	ENSMUST00000143206.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000053768.14	Chchd3	chr6	protein_coding	coiled-coil-helix-coiled-coil-helix domain containing 3
novel_NIR_16041	chr6	32920832	32945136	-	32870341	32945136	A3SS	ENSMUST00000127666.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000053768.14	Chchd3	chr6	protein_coding	coiled-coil-helix-coiled-coil-helix domain containing 3
novel_NIR_16042	chr6	32942951	32945136	-	32870341	32945136	A3SS	ENSMUST00000127666.8	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000053768.14	Chchd3	chr6	protein_coding	coiled-coil-helix-coiled-coil-helix domain containing 3
novel_NIR_16043	chr6	32975917	32985418	-	32945201	32985418	A3SS	ENSMUST00000124436.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	ENSMUSG00000053768.14	Chchd3	chr6	protein_coding	coiled-coil-helix-coiled-coil-helix domain containing 3
novel_NIR_16044	chr6	33226173	33242841	+	33226173	33242875	A3SS	ENSMUST00000052266.15	novel	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	18	0	18	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	25	0	25	n	0.25	2	6	2	6	y	0.00	0	10	0	10	n	ENSMUSG00000029763.18	Exoc4	chr6	protein_coding	exocyst complex component 4
novel_NIR_16045	chr6	3335888	3341163	-	3335888	3342596	A5SS	ENSMUST00000201831.4	novel	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	1.00	4	0	4	0	y	0.67	2	1	2	1	y	1.00	2	0	2	0	y	1.00	6	0	6	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.83	5	1	5	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000106734.4	Gm20559	chr6	lncRNA	predicted gene, 20559
novel_NIR_16046	chr6	34453357	34464470	+	34453357	34464225	A3SS	ENSMUST00000045372.6	novel	0.02	1	49	1	49	n	0.07	2	27	2	27	n	0.06	4	66	4	66	n	0.07	3	41	3	41	n	0.03	2	65	2	65	n	0.00	0	49	0	49	n	0.06	3	49	3	49	n	0.04	2	50	2	50	n	0.05	1	20	1	20	n	0.05	3	57	3	57	n	0.00	0	24	0	24	n	0.19	6	25	6	25	y	ENSMUSG00000038871.6	Bpgm	chr6	protein_coding	2,3-bisphosphoglycerate mutase
novel_NIR_16047	chr6	34722950	34723710	+	34722950	34724821	A3SS	ENSMUST00000126181.8	novel	0.14	2	12	2	12	n	0.17	3	15	3	15	y	0.00	0	40	0	40	n	0.00	0	40	0	40	n	0.02	1	49	1	49	n	0.00	0	12	0	12	n	0.00	0	17	0	17	n	0.00	0	23	0	23	n	0.04	1	22	1	22	n	0.00	0	29	0	29	n	0.00	0	20	0	20	n	0.00	0	34	0	34	n	ENSMUSG00000029761.17	Cald1	chr6	protein_coding	caldesmon 1
novel_NIR_16048	chr6	34722950	34723710	+	34722950	34724827	A3SS	ENSMUST00000031775.13	novel	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029761.17	Cald1	chr6	protein_coding	caldesmon 1
novel_NIR_16049	chr6	34840275	34843858	+	34840275	34845450	A3SS	ENSMUST00000123019.8	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.20	3	12	3	12	y	0.00	0	10	0	10	n	0.00	0	11	0	11	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	ENSMUSG00000057137.10	Tmem140	chr6	protein_coding	transmembrane protein 140
novel_NIR_16050	chr6	34844120	34844209	+	34844120	34849463	A3SS	ENSMUST00000202999.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000057137.10	Tmem140	chr6	protein_coding	transmembrane protein 140
novel_NIR_16051	chr6	34846589	34849463	+	34844120	34849463	A5SS	ENSMUST00000202999.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000057137.10	Tmem140	chr6	protein_coding	transmembrane protein 140
novel_NIR_16052	chr6	34846589	34849463	+	34845757	34849463	A5SS	ENSMUST00000202010.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	ENSMUSG00000057137.10	Tmem140	chr6	protein_coding	transmembrane protein 140
novel_NIR_16053	chr6	34852547	34853653	-	34852547	34853474	A5SS	ENSMUST00000055097.11	novel	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.22	2	7	2	7	y	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	ENSMUSG00000046806.14	Cyren	chr6	protein_coding	cell cycle regulator of NHEJ
novel_NIR_16054	chr6	34853706	34854611	-	34853706	34854510	A5SS	ENSMUST00000055097.11	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000046806.14	Cyren	chr6	protein_coding	cell cycle regulator of NHEJ
novel_NIR_16055	chr6	34853706	34854611	-	34853706	34854835	A5SS	ENSMUST00000115007.9	novel	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.20	1	4	1	4	n	0.20	2	8	2	8	y	0.12	1	7	1	7	n	0.00	0	7	0	7	n	ENSMUSG00000046806.14	Cyren	chr6	protein_coding	cell cycle regulator of NHEJ
novel_NIR_16056	chr6	34853706	34854648	-	34853706	34854510	A5SS	ENSMUST00000055097.11	novel	0.67	2	1	2	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000046806.14	Cyren	chr6	protein_coding	cell cycle regulator of NHEJ
novel_NIR_16057	chr6	34853706	34854648	-	34853706	34854835	A5SS	ENSMUST00000115007.9	novel	0.18	2	9	2	9	y	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.20	1	4	1	4	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	ENSMUSG00000046806.14	Cyren	chr6	protein_coding	cell cycle regulator of NHEJ
novel_NIR_16058	chr6	34869469	34870777	-	34869469	34873116	A5SS	ENSMUST00000081214.12	novel	0.60	15	10	15	10	y	0.59	13	9	13	9	y	0.29	4	10	4	10	y	0.41	14	20	14	20	y	0.39	11	17	11	17	y	0.20	1	4	1	4	n	0.57	16	12	16	12	y	0.57	4	3	4	3	y	0.70	19	8	19	8	y	0.57	20	15	20	15	y	0.40	14	21	14	21	y	0.60	21	14	21	14	n	ENSMUSG00000058486.12	Wdr91	chr6	protein_coding	WD repeat domain 91
novel_NIR_16059	chr6	35001145	35027997	-	35000367	35027997	A3SS	ENSMUST00000202143.4	novel	0.00	0	7	0	7	n	0.33	1	2	1	2	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.20	2	8	2	8	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	1.00	1	0	1	0	n	0.12	1	7	1	7	n	ENSMUSG00000038784.14	Cnot4	chr6	protein_coding	CCR4-NOT transcription complex, subunit 4
novel_NIR_16060	chr6	35001145	35027997	-	35001275	35027997	A3SS	ENSMUST00000114993.9	novel	0.00	0	14	0	14	n	0.09	1	10	1	10	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.18	2	9	2	9	y	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.08	1	11	1	11	n	ENSMUSG00000038784.14	Cnot4	chr6	protein_coding	CCR4-NOT transcription complex, subunit 4
novel_NIR_16061	chr6	35057161	35109791	-	35057161	35110437	A5SS	ENSMUST00000202143.4	novel	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.33	4	8	4	8	y	0.00	0	6	0	6	n	0.00	0	5	0	5	n	ENSMUSG00000038784.14	Cnot4	chr6	protein_coding	CCR4-NOT transcription complex, subunit 4
novel_NIR_16062	chr6	35229717	35237184	+	35229717	35229891	A3SS&ES	ENSMUST00000130875.8	novel	0.33	2	4	2	4	y	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	ENSMUSG00000073155.13	1810058I24Rik	chr6	protein_coding	RIKEN cDNA 1810058I24 gene
novel_NIR_16063	chr6	3555466	3565516	+	3555466;3562358	3562268;3565516	ES	ENSMUST00000001412.17	novel	0.00	0	8.0	0	13;3	n	0.00	0	9.0	0	10;8	n	0.05	1	21.0	1	22;20	n	0.16	3	15.5	3	18;13	y	0.00	0	26.0	0	22;30	n	0.00	0	5.5	0	6;5	n	0.00	0	12.5	0	8;17	n	0.00	0	9.0	0	7;11	n	0.15	1	5.5	1	6;5	n	0.07	1	13.5	1	16;11	n	0.00	0	8.5	0	9;8	n	0.00	0	15.0	0	12;18	n	ENSMUSG00000001376.18	Vps50	chr6	protein_coding	VPS50 EARP/GARPII complex subunit
novel_NIR_16064	chr6	3555466	3565516	+	3562358	3565516	5pMXE	ENSMUST00000184461.8	novel	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.05	1	20	1	20	n	0.19	3	13	3	13	y	0.00	0	30	0	30	n	0.00	0	5	0	5	n	0.00	0	17	0	17	n	0.00	0	11	0	11	n	0.17	1	5	1	5	n	0.08	1	11	1	11	n	0.00	0	8	0	8	n	0.00	0	18	0	18	n	ENSMUSG00000001376.18	Vps50	chr6	protein_coding	VPS50 EARP/GARPII complex subunit
novel_NIR_16065	chr6	37509581	37527141	+	37516809	37527141	5pMXE	ENSMUST00000123648.2	novel	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.25	1	3	1	3	n	0.62	5	3	5	3	y	0.29	2	5	2	5	y	0.00	0	2	0	2	n	0.20	2	8	2	8	y	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.75	9	3	9	3	y	0.43	6	8	6	8	y	0.33	2	4	2	4	y	ENSMUSG00000038641.13	Akr1d1	chr6	protein_coding	aldo-keto reductase family 1, member D1
novel_NIR_16066	chr6	37515058	37527141	+	37516809	37527141	5pMXE	ENSMUST00000123648.2	novel	0.00	0	3	0	3	n	0.22	2	7	2	7	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.33	1	2	1	2	n	0.20	2	8	2	8	y	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.20	1	4	1	4	n	ENSMUSG00000038641.13	Akr1d1	chr6	protein_coding	aldo-keto reductase family 1, member D1
novel_NIR_16067	chr6	37516809	37516939	+	37516809	37527141	A3SS	ENSMUST00000123648.2	novel	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.25	1	3	1	3	n	0.40	2	3	2	3	y	0.25	1	3	1	3	n	0.11	1	8	1	8	n	0.00	0	4	0	4	n	ENSMUSG00000038641.13	Akr1d1	chr6	protein_coding	aldo-keto reductase family 1, member D1
novel_NIR_16068	chr6	37516809	37519180	+	37516809	37527141	A3SS	ENSMUST00000123648.2	novel	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	ENSMUSG00000038641.13	Akr1d1	chr6	protein_coding	aldo-keto reductase family 1, member D1
novel_NIR_16069	chr6	37885299	37892102	+	37885299	37892100	A3SS	ENSMUST00000149828.8	novel	0.00	0	25	0	25	n	0.00	0	27	0	27	n	0.00	0	25	0	25	n	0.00	0	35	0	35	n	0.00	0	35	0	35	n	0.00	0	12	0	12	n	0.00	0	34	0	34	n	0.00	0	25	0	25	n	0.00	0	20	0	20	n	0.00	0	23	0	23	n	0.00	0	20	0	20	n	0.17	2	10	2	10	y	ENSMUSG00000029833.18	Trim24	chr6	protein_coding	tripartite motif-containing 24
novel_NIR_16070	chr6	38168699	38230803	-	38168699	38171319	5pMXE	ENSMUST00000149557.3	novel	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000063455.17	D630045J12Rik	chr6	protein_coding	RIKEN cDNA D630045J12 gene
novel_NIR_16071	chr6	38168699	38230803	-	38168699;38174024	38171319;38230803	ES	ENSMUST00000117556.8	novel	0.00	0	3.5	0	7;0	n	0.00	0	1.5	0	1;2	n	0.00	0	0.5	0	1;0	n	0.67	2	1.0	2	0;2	y	0.00	0	3.0	0	3;3	n	-	-	-	-	-	-	0.00	0	2.0	0	2;2	n	0.00	0	2.5	0	3;2	n	-	-	-	-	-	-	0.00	0	2.0	0	3;1	n	0.00	0	2.0	0	2;2	n	-	-	-	-	-	-	ENSMUSG00000063455.17	D630045J12Rik	chr6	protein_coding	RIKEN cDNA D630045J12 gene
novel_NIR_16072	chr6	38317290	38319011	-	38317290	38330850	A5SS	ENSMUST00000114900.8	novel	0.00	0	30	0	30	n	0.00	0	12	0	12	n	0.02	1	58	1	58	n	0.00	0	53	0	53	n	0.00	0	53	0	53	n	0.05	1	21	1	21	n	0.15	4	22	4	22	y	0.00	0	24	0	24	n	0.00	0	26	0	26	n	0.03	1	39	1	39	n	0.00	0	27	0	27	n	0.00	0	50	0	50	n	ENSMUSG00000029826.15	Zc3hav1	chr6	protein_coding	zinc finger CCCH type, antiviral 1
novel_NIR_16073	chr6	38411533	38417393	+	38411533	38417390	A3SS	ENSMUST00000160583.8	novel	0.00	0	8	0	8	n	-	-	-	-	-	-	0.07	1	13	1	13	n	0.40	2	3	2	3	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.38	3	5	3	5	y	ENSMUSG00000038538.18	Ubn2	chr6	protein_coding	ubinuclein 2
novel_NIR_16074	chr6	38468866	38468941	+	38468866	38499095	A3SS	ENSMUST00000162593.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000038538.18	Ubn2	chr6	protein_coding	ubinuclein 2
novel_NIR_16075	chr6	38468866	38468941	+	38468866	38499236	A3SS	ENSMUST00000159447.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038538.18	Ubn2	chr6	protein_coding	ubinuclein 2
novel_NIR_16076	chr6	38469030	38475623	+	38468866	38475623	A5SS	ENSMUST00000160583.8	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	19	0	19	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.33	2	4	2	4	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	ENSMUSG00000038538.18	Ubn2	chr6	protein_coding	ubinuclein 2
novel_NIR_16077	chr6	38511914	38516094	+	38510646	38516094	A5SS	ENSMUST00000147651.2	novel	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.90	9	1	9	1	y	-	-	-	-	-	-	0.50	5	5	5	5	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	-	-	-	-	-	-	ENSMUSG00000019689.5	Fmc1	chr6	protein_coding	formation of mitochondrial complex V assembly factor 1
novel_NIR_16078	chr6	38528843	38545782	+	38528843;38531998	38531915;38545782	ES	ENSMUST00000160582.2	novel	0.00	0	14.0	0	28;0	n	0.00	0	10.5	0	21;0	n	0.00	0	7.0	0	14;0	n	0.00	0	12.0	0	24;0	n	0.00	0	23.0	0	45;1	n	0.22	2	7.0	2	12;2	y	0.00	0	9.0	0	18;0	n	0.00	0	11.5	0	23;0	n	0.10	1	9.0	1	18;0	n	0.00	0	15.5	0	31;0	n	0.15	1	5.5	1	11;0	n	0.00	0	13.5	0	27;0	n	ENSMUSG00000029823.17	Luc7l2	chr6	protein_coding	LUC7-like 2 (S. cerevisiae)
novel_NIR_16079	chr6	38531998	38534235	+	38531998	38545782	A3SS	ENSMUST00000160582.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	0.80	4	1	4	1	y	0.50	2	2	2	2	y	1.00	6	0	6	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	5	0	5	0	n	1.00	4	0	4	0	y	1.00	3	0	3	0	y	ENSMUSG00000029823.17	Luc7l2	chr6	protein_coding	LUC7-like 2 (S. cerevisiae)
novel_NIR_16080	chr6	38531998	38534235	+	38531998	38547445	A3SS	ENSMUST00000163047.8	novel	0.00	0	4	0	4	n	0.50	3	3	3	3	y	0.50	2	2	2	2	y	0.00	0	5	0	5	n	0.44	4	5	4	5	y	1.00	2	0	2	0	y	0.55	6	5	6	5	y	1.00	3	0	3	0	y	0.80	4	1	4	1	y	0.56	5	4	5	4	y	1.00	4	0	4	0	y	0.50	3	3	3	3	y	ENSMUSG00000029823.17	Luc7l2	chr6	protein_coding	LUC7-like 2 (S. cerevisiae)
novel_NIR_16081	chr6	38531998	38534787	+	38531998	38545782	A3SS	ENSMUST00000160582.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.67	2	1	2	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029823.17	Luc7l2	chr6	protein_coding	LUC7-like 2 (S. cerevisiae)
novel_NIR_16082	chr6	38531998	38534787	+	38531998	38547445	A3SS	ENSMUST00000163047.8	novel	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.29	2	5	2	5	y	0.29	2	5	2	5	y	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.20	1	4	1	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000029823.17	Luc7l2	chr6	protein_coding	LUC7-like 2 (S. cerevisiae)
novel_NIR_16083	chr6	38531998	38534787	+	38534315	38534787	A5SS	ENSMUST00000162718.5	novel	0.20	1	4	1	4	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.22	2	7	2	7	y	0.22	2	7	2	7	y	0.00	0	1	0	1	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.06	1	16	1	16	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	ENSMUSG00000029823.17	Luc7l2	chr6	protein_coding	LUC7-like 2 (S. cerevisiae)
novel_NIR_16084	chr6	38531998	38536139	+	38528843	38536139	A5SS	ENSMUST00000162386.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	y	ENSMUSG00000029823.17	Luc7l2	chr6	protein_coding	LUC7-like 2 (S. cerevisiae)
novel_NIR_16085	chr6	38531998	38542590	+	38531998	38545782	A3SS	ENSMUST00000160582.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000029823.17	Luc7l2	chr6	protein_coding	LUC7-like 2 (S. cerevisiae)
novel_NIR_16086	chr6	38531998	38542590	+	38531998	38547445	A3SS	ENSMUST00000163047.8	novel	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.29	2	5	2	5	y	-	-	-	-	-	-	0.17	1	5	1	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.25	1	3	1	3	n	ENSMUSG00000029823.17	Luc7l2	chr6	protein_coding	LUC7-like 2 (S. cerevisiae)
novel_NIR_16087	chr6	38531998;38536239	38536139;38545782	+	38531998	38545782	cassetteExon	ENSMUST00000160582.2	novel	-	-	-	-	-	-	1.00	2.0	0	0;4	0	n	1.00	0.5	0	0;1	0	n	1.00	1.0	0	0;2	0	n	0.83	5.0	1	1;9	1	n	0.00	0.0	2	0;0	2	n	1.00	1.0	0	0;2	0	n	1.00	0.5	0	0;1	0	n	-	-	-	-	-	-	1.00	0.5	0	1;0	0	n	1.00	0.5	0	0;1	0	n	1.00	4.0	0	5;3	0	y	ENSMUSG00000029823.17	Luc7l2	chr6	protein_coding	LUC7-like 2 (S. cerevisiae)
novel_NIR_16088	chr6	38531998;38536239	38536139;38547445	+	38531998	38547445	cassetteExon	ENSMUST00000163047.8	novel	0.00	0.0	4	0;0	4	n	0.40	2.0	3	0;4	3	n	0.00	0.0	2	0;0	2	n	0.00	0.0	5	0;0	5	n	0.38	3.0	5	1;5	5	n	-	-	-	-	-	-	0.00	0.0	5	0;0	5	n	-	-	-	-	-	-	0.75	3.0	1	0;6	1	n	0.50	4.0	4	1;7	4	n	-	-	-	-	-	-	0.67	6.0	3	5;7	3	y	ENSMUSG00000029823.17	Luc7l2	chr6	protein_coding	LUC7-like 2 (S. cerevisiae)
novel_NIR_16089	chr6	38532171	38534787	+	38534315	38534787	A5SS	ENSMUST00000162718.5	novel	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.42	5	7	5	7	y	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.06	1	16	1	16	n	0.00	0	2	0	2	n	0.14	1	6	1	6	n	ENSMUSG00000029823.17	Luc7l2	chr6	protein_coding	LUC7-like 2 (S. cerevisiae)
novel_NIR_16090	chr6	38534315	38534931	+	38534315	38534787	3pMXE	ENSMUST00000162718.5	novel	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.56	5	4	5	4	y	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.25	2	6	2	6	y	0.00	0	16	0	16	n	0.00	0	2	0	2	n	0.14	1	6	1	6	n	ENSMUSG00000029823.17	Luc7l2	chr6	protein_coding	LUC7-like 2 (S. cerevisiae)
novel_NIR_16091	chr6	38536239	38545782	+	38531998	38545782	A5SS	ENSMUST00000160582.2	novel	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.90	9	1	9	1	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	n	ENSMUSG00000029823.17	Luc7l2	chr6	protein_coding	LUC7-like 2 (S. cerevisiae)
novel_NIR_16092	chr6	38536239	38547445	+	38528843	38547445	A5SS	ENSMUST00000161538.8	novel	0.00	0	15	0	15	n	0.31	4	9	4	9	y	0.00	0	46	0	46	n	0.00	0	27	0	27	n	0.19	5	22	5	22	y	0.00	0	28	0	28	n	0.00	0	35	0	35	n	0.00	0	24	0	24	n	0.40	6	9	6	9	y	0.17	7	33	7	33	y	0.00	0	13	0	13	n	0.16	7	36	7	36	y	ENSMUSG00000029823.17	Luc7l2	chr6	protein_coding	LUC7-like 2 (S. cerevisiae)
novel_NIR_16093	chr6	38536239	38547445	+	38531998	38547445	A5SS	ENSMUST00000163047.8	novel	0.00	0	4	0	4	n	0.57	4	3	4	3	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.50	5	5	5	5	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.86	6	1	6	1	y	0.64	7	4	7	4	n	-	-	-	-	-	-	0.70	7	3	7	3	n	ENSMUSG00000029823.17	Luc7l2	chr6	protein_coding	LUC7-like 2 (S. cerevisiae)
novel_NIR_16094	chr6	38542657	38547445	+	38528843	38547445	A5SS	ENSMUST00000161538.8	novel	0.12	2	15	2	15	n	0.00	0	9	0	9	n	0.06	3	46	3	46	n	0.07	2	27	2	27	n	0.00	0	22	0	22	n	0.00	0	28	0	28	n	0.00	0	35	0	35	n	0.00	0	24	0	24	n	0.00	0	9	0	9	n	0.11	4	33	4	33	n	0.24	4	13	4	13	y	0.00	0	36	0	36	n	ENSMUSG00000029823.17	Luc7l2	chr6	protein_coding	LUC7-like 2 (S. cerevisiae)
novel_NIR_16095	chr6	38542657	38547445	+	38531998	38547445	A5SS	ENSMUST00000163047.8	novel	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.60	3	2	3	2	y	0.29	2	5	2	5	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	4	4	4	4	y	1.00	4	0	4	0	y	0.00	0	3	0	3	n	ENSMUSG00000029823.17	Luc7l2	chr6	protein_coding	LUC7-like 2 (S. cerevisiae)
novel_NIR_16096	chr6	38545852;38546944	38546867;38547445	+	38545852	38547445	cassetteExon	ENSMUST00000162386.8	novel	0.02	1.0	57	0;2	57	n	0.09	5.0	51	0;10	51	n	0.02	0.5	30	0;1	30	n	0.06	2.5	37	2;3	37	n	0.15	7.5	41	5;10	41	y	0.14	3.0	19	2;4	19	n	0.03	1.5	43	0;3	43	n	0.13	5.0	33	1;9	33	n	0.11	5.5	43	3;8	43	n	0.05	3.5	64	3;4	64	n	0.11	4.0	33	4;4	33	n	0.07	5.5	75	3;8	75	n	ENSMUSG00000029823.17	Luc7l2	chr6	protein_coding	LUC7-like 2 (S. cerevisiae)
novel_NIR_16097	chr6	38546469	38547445	+	38528843	38547445	A5SS	ENSMUST00000161538.8	novel	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.06	3	46	3	46	n	0.00	0	27	0	27	n	0.12	3	22	3	22	n	0.00	0	28	0	28	n	0.12	5	35	5	35	n	0.00	0	24	0	24	n	0.31	4	9	4	9	y	0.00	0	33	0	33	n	0.00	0	13	0	13	n	0.10	4	36	4	36	n	ENSMUSG00000029823.17	Luc7l2	chr6	protein_coding	LUC7-like 2 (S. cerevisiae)
novel_NIR_16098	chr6	38546469	38547445	+	38531998	38547445	A5SS	ENSMUST00000163047.8	novel	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.60	3	2	3	2	y	0.00	0	5	0	5	n	0.38	3	5	3	5	y	-	-	-	-	-	-	0.50	5	5	5	5	y	-	-	-	-	-	-	0.80	4	1	4	1	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.57	4	3	4	3	y	ENSMUSG00000029823.17	Luc7l2	chr6	protein_coding	LUC7-like 2 (S. cerevisiae)
novel_NIR_16099	chr6	38546940	38547445	+	38528843	38547445	A5SS	ENSMUST00000161538.8	novel	0.00	0	15	0	15	n	0.31	4	9	4	9	y	0.06	3	46	3	46	n	0.07	2	27	2	27	n	0.00	0	22	0	22	n	0.00	0	28	0	28	n	0.03	1	35	1	35	n	0.17	5	24	5	24	y	0.44	7	9	7	9	y	0.00	0	33	0	33	n	0.28	5	13	5	13	y	0.03	1	36	1	36	n	ENSMUSG00000029823.17	Luc7l2	chr6	protein_coding	LUC7-like 2 (S. cerevisiae)
novel_NIR_16100	chr6	38546940	38547445	+	38531998	38547445	A5SS	ENSMUST00000163047.8	novel	0.00	0	4	0	4	n	0.57	4	3	4	3	y	0.60	3	2	3	2	y	0.29	2	5	2	5	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.17	1	5	1	5	n	1.00	5	0	5	0	y	0.88	7	1	7	1	y	0.00	0	4	0	4	n	1.00	5	0	5	0	y	0.25	1	3	1	3	n	ENSMUSG00000029823.17	Luc7l2	chr6	protein_coding	LUC7-like 2 (S. cerevisiae)
novel_NIR_16101	chr6	38546944	38547445	+	38528843	38547445	A5SS	ENSMUST00000161538.8	novel	0.12	2	15	2	15	n	0.53	10	9	10	9	y	0.02	1	46	1	46	n	0.10	3	27	3	27	n	0.31	10	22	10	22	y	0.12	4	28	4	28	n	0.08	3	35	3	35	n	0.27	9	24	9	24	y	0.47	8	9	8	9	y	0.11	4	33	4	33	n	0.24	4	13	4	13	y	0.18	8	36	8	36	y	ENSMUSG00000029823.17	Luc7l2	chr6	protein_coding	LUC7-like 2 (S. cerevisiae)
novel_NIR_16102	chr6	38546944	38547445	+	38531998	38547445	A5SS	ENSMUST00000163047.8	novel	0.33	2	4	2	4	y	0.77	10	3	10	3	y	0.33	1	2	1	2	n	0.38	3	5	3	5	y	0.67	10	5	10	5	y	1.00	4	0	4	0	y	0.38	3	5	3	5	y	1.00	9	0	9	0	y	0.89	8	1	8	1	y	0.50	4	4	4	4	y	1.00	4	0	4	0	y	0.73	8	3	8	3	y	ENSMUSG00000029823.17	Luc7l2	chr6	protein_coding	LUC7-like 2 (S. cerevisiae)
novel_NIR_16103	chr6	39095754	39122018	+	39095754	39117094	A3SS&ES	ENSMUST00000146981.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000073144.5	4930599N23Rik	chr6	lncRNA	RIKEN cDNA 4930599N23 gene
novel_NIR_16104	chr6	39324364	39325869	-	39324364	39324659	5pMXE	ENSMUST00000202714.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029924.13	Slc37a3	chr6	protein_coding	solute carrier family 37 (glycerol-3-phosphate transporter), member 3
novel_NIR_16105	chr6	39343980	39349781	-	39343980	39344578	A5SS&ES	ENSMUST00000202952.2	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.20	3	12	3	12	y	0.67	2	1	2	1	y	0.14	1	6	1	6	n	0.27	3	8	3	8	y	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	11	0	11	n	ENSMUSG00000029924.13	Slc37a3	chr6	protein_coding	solute carrier family 37 (glycerol-3-phosphate transporter), member 3
novel_NIR_16106	chr6	39343980	39349781	-	39343980	39349013	A5SS&ES	ENSMUST00000202749.4	novel	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.38	3	5	3	5	y	0.33	2	4	2	4	y	0.50	1	1	1	1	n	0.27	3	8	3	8	y	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.50	1	1	1	1	n	0.00	0	4	0	4	n	ENSMUSG00000029924.13	Slc37a3	chr6	protein_coding	solute carrier family 37 (glycerol-3-phosphate transporter), member 3
novel_NIR_16107	chr6	39343980	39349781	-	39343980	39354169	A5SS	ENSMUST00000200771.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000029924.13	Slc37a3	chr6	protein_coding	solute carrier family 37 (glycerol-3-phosphate transporter), member 3
novel_NIR_16108	chr6	39343980	39349781	-	39343980	39354553	A5SS	ENSMUST00000090243.8	novel	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.16	3	16	3	16	y	0.17	2	10	2	10	y	0.05	1	19	1	19	n	0.15	3	17	3	17	y	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.10	1	9	1	9	n	0.00	0	13	0	13	n	0.50	1	1	1	1	n	0.00	0	17	0	17	n	ENSMUSG00000029924.13	Slc37a3	chr6	protein_coding	solute carrier family 37 (glycerol-3-phosphate transporter), member 3
novel_NIR_16109	chr6	39343980	39349781	-	39343980;39349071	39349013;39349781	ES	ENSMUST00000202400.4	novel	0.00	0	4.0	0	5;3	n	0.00	0	3.5	0	4;3	n	0.38	3	5.0	3	5;5	y	0.36	2	3.5	2	4;3	y	0.33	1	2.0	1	1;3	n	0.26	3	8.5	3	8;9	y	0.00	0	5.5	0	2;9	n	0.00	0	4.0	0	6;2	n	0.25	1	3.0	1	3;3	n	0.00	0	6.0	0	6;6	n	0.67	1	0.5	1	1;0	n	0.00	0	6.0	0	4;8	n	ENSMUSG00000029924.13	Slc37a3	chr6	protein_coding	solute carrier family 37 (glycerol-3-phosphate transporter), member 3
novel_NIR_16110	chr6	39387150	39396823	-	39387150	39396401	5pMXE	ENSMUST00000114823.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000029922.16	Mkrn1	chr6	protein_coding	makorin, ring finger protein, 1
novel_NIR_16111	chr6	39387150	39396823	-	39387150	39396573	5pMXE	ENSMUST00000146785.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000029922.16	Mkrn1	chr6	protein_coding	makorin, ring finger protein, 1
novel_NIR_16112	chr6	39387150	39396823	-	39387150	39396774	A5SS	ENSMUST00000122996.8	novel	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.43	3	4	3	4	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.14	1	6	1	6	n	0.12	1	7	1	7	n	0.25	1	3	1	3	n	ENSMUSG00000029922.16	Mkrn1	chr6	protein_coding	makorin, ring finger protein, 1
novel_NIR_16113	chr6	39551753	39553297	+	39550963	39553297	A5SS	ENSMUST00000145788.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000046947.13	Adck2	chr6	protein_coding	aarF domain containing kinase 2
novel_NIR_16114	chr6	39551753	39553297	+	39552140	39553297	A5SS	ENSMUST00000140364.8	novel	0.00	0	16	0	16	n	0.00	0	18	0	18	n	0.00	0	28	0	28	n	0.00	0	18	0	18	n	0.00	0	25	0	25	n	0.00	0	17	0	17	n	0.00	0	34	0	34	n	0.18	3	14	3	14	y	0.00	0	22	0	22	n	0.00	0	31	0	31	n	0.00	0	26	0	26	n	0.00	0	23	0	23	n	ENSMUSG00000046947.13	Adck2	chr6	protein_coding	aarF domain containing kinase 2
novel_NIR_16115	chr6	39563828	39564711	+	39563828;39564562	39564303;39564711	ES	ENSMUST00000126621.3	novel	0.00	0	13.5	0	27;0	n	0.00	0	22.5	0	45;0	n	0.00	0	16.0	0	32;0	n	0.05	1	18.0	1	36;0	n	0.00	0	15.5	0	30;1	n	0.06	1	16.5	1	33;0	n	0.00	0	23.5	0	47;0	n	0.00	0	15.0	0	28;2	n	0.00	0	9.0	0	18;0	n	0.00	0	19.0	0	38;0	n	0.16	3	16.0	3	32;0	y	0.00	0	14.0	0	28;0	n	ENSMUSG00000107071.2	Gm42420	chr6	protein_coding	predicted gene, 42420
novel_NIR_16116	chr6	39569646	39575200	+	39574280	39575200	5pMXE	ENSMUST00000128064.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.18	2	9	2	9	y	0.25	1	3	1	3	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	ENSMUSG00000002416.14	Ndufb2	chr6	protein_coding	NADH:ubiquinone oxidoreductase subunit B2
novel_NIR_16117	chr6	39570031	39573385	+	39564782	39573385	A5SS	ENSMUST00000126621.3	novel	0.75	3	1	3	1	y	0.33	1	2	1	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000107071.2	Gm42420	chr6	protein_coding	predicted gene, 42420
novel_NIR_16118	chr6	39570031	39573385	+	39569737	39573385	A5SS	ENSMUST00000002490.7	novel	0.50	3	3	3	3	y	0.50	1	1	1	1	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.18	2	9	2	9	y	0.00	0	3	0	3	n	0.10	1	9	1	9	n	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.33	1	2	1	2	n	0.60	3	2	3	2	y	0.00	0	4	0	4	n	ENSMUSG00000002416.14	Ndufb2	chr6	protein_coding	NADH:ubiquinone oxidoreductase subunit B2
novel_NIR_16119	chr6	39573458	39575200	+	39574280	39575200	5pMXE	ENSMUST00000128064.2	novel	0.50	2	2	2	2	y	1.00	6	0	6	0	y	0.50	9	9	9	9	y	0.67	6	3	6	3	y	0.64	9	5	9	5	y	0.50	2	2	2	2	y	0.86	6	1	6	1	y	0.67	4	2	4	2	y	0.00	0	2	0	2	n	0.75	6	2	6	2	y	0.90	9	1	9	1	y	1.00	7	0	7	0	y	ENSMUSG00000002416.14	Ndufb2	chr6	protein_coding	NADH:ubiquinone oxidoreductase subunit B2
novel_NIR_16120	chr6	39573528	39575200	+	39574280	39575200	5pMXE	ENSMUST00000128064.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	-	-	-	-	-	-	ENSMUSG00000002416.14	Ndufb2	chr6	protein_coding	NADH:ubiquinone oxidoreductase subunit B2
novel_NIR_16121	chr6	39642040	39643171	-	39642040	39643180	A5SS	ENSMUST00000002487.15	novel	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.00	0	16	0	16	n	0.00	0	18	0	18	n	0.00	0	6	0	6	n	0.25	3	9	3	9	y	0.00	0	10	0	10	n	0.12	1	7	1	7	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.09	1	10	1	10	n	ENSMUSG00000002413.16	Braf	chr6	protein_coding	Braf transforming gene
novel_NIR_16122	chr6	3965539	3974531	-	3965539	3967868	A5SS&ES	ENSMUST00000203257.2	novel	0.13	21	140	21	140	n	0.19	20	84	20	84	y	0.19	43	187	43	187	y	0.20	46	180	46	180	y	0.24	54	171	54	171	y	0.09	11	117	11	117	n	0.31	61	135	61	135	y	0.17	22	107	22	107	y	0.17	27	132	27	132	y	0.23	56	188	56	188	y	0.24	36	112	36	112	y	0.22	53	189	53	189	y	ENSMUSG00000029664.11	Tfpi2	chr6	protein_coding	tissue factor pathway inhibitor 2
novel_NIR_16123	chr6	3965539	3974531	-	3965539;3968050	3967868;3974531	ES	ENSMUST00000183682.3	novel	0.15	21	119.5	21	140;99	y	0.22	20	69.5	20	84;55	y	0.24	43	136.0	43	187;85	y	0.24	46	144.0	46	180;108	y	0.30	54	129.0	54	171;87	y	0.11	11	87.0	11	117;57	n	0.37	61	104.5	61	135;74	y	0.20	22	88.5	22	107;70	y	0.19	27	114.5	27	132;97	y	0.25	56	169.0	56	188;150	y	0.26	36	103.5	36	112;95	y	0.25	53	157.0	53	189;125	y	ENSMUSG00000029664.11	Tfpi2	chr6	protein_coding	tissue factor pathway inhibitor 2
novel_NIR_16124	chr6	3968011	3968237	-	3968050	3968237	A3SS	ENSMUST00000031674.11	novel	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.00	0	47	0	47	n	0.00	0	13	0	13	n	0.00	0	22	0	22	n	0.00	0	12	0	12	n	0.00	0	20	0	20	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	24	0	24	n	0.00	0	6	0	6	n	0.38	6	10	6	10	y	ENSMUSG00000029664.11	Tfpi2	chr6	protein_coding	tissue factor pathway inhibitor 2
novel_NIR_16125	chr6	3968356	3974531	-	3968050	3974531	A3SS	ENSMUST00000183682.3	novel	0.14	16	99	16	99	n	0.05	3	55	3	55	n	0.21	23	85	23	85	y	0.12	15	108	15	108	n	0.12	12	87	12	87	n	0.03	2	57	2	57	n	0.11	9	74	9	74	n	0.14	11	70	11	70	n	0.14	16	97	16	97	n	0.07	12	150	12	150	n	0.07	7	95	7	95	n	0.07	9	125	9	125	n	ENSMUSG00000029664.11	Tfpi2	chr6	protein_coding	tissue factor pathway inhibitor 2
novel_NIR_16126	chr6	3968356	3988823	-	3968050	3988823	A3SS	ENSMUST00000203257.2	novel	0.10	1	9	1	9	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.18	2	9	2	9	y	0.23	3	10	3	10	y	0.00	0	8	0	8	n	0.10	1	9	1	9	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	ENSMUSG00000029664.11	Tfpi2	chr6	protein_coding	tissue factor pathway inhibitor 2
novel_NIR_16127	chr6	3968568	3988823	-	3968050	3988823	A3SS	ENSMUST00000203257.2	novel	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.18	2	9	2	9	y	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	ENSMUSG00000029664.11	Tfpi2	chr6	protein_coding	tissue factor pathway inhibitor 2
novel_NIR_16128	chr6	39779478	39782368	-	39779478	39782421	A5SS	ENSMUST00000114797.2	novel	0.00	0	17	0	17	n	0.00	0	22	0	22	n	0.24	5	16	5	16	y	0.00	0	18	0	18	n	0.00	0	18	0	18	n	0.00	0	15	0	15	n	0.00	0	28	0	28	n	0.00	0	6	0	6	n	0.00	0	19	0	19	n	0.00	0	31	0	31	n	0.00	0	17	0	17	n	0.19	3	13	3	13	y	ENSMUSG00000029918.10	Mrps33	chr6	protein_coding	mitochondrial ribosomal protein S33
novel_NIR_16129	chr6	3989299	3994217	+	3994086	3994217	5pMXE	ENSMUST00000031673.7	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.60	3	2	3	2	y	ENSMUSG00000029663.11	Gngt1	chr6	protein_coding	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1
novel_NIR_16130	chr6	3992321	3994217	+	3994086	3994217	5pMXE	ENSMUST00000031673.7	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	ENSMUSG00000029663.11	Gngt1	chr6	protein_coding	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1
novel_NIR_16131	chr6	3992493	3994217	+	3994086	3994217	5pMXE	ENSMUST00000031673.7	novel	0.60	3	2	3	2	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.75	3	1	3	1	y	0.33	1	2	1	2	n	0.00	0	2	0	2	n	ENSMUSG00000029663.11	Gngt1	chr6	protein_coding	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1
novel_NIR_16132	chr6	40611826	40619913	+	40605929	40619913	A5SS	ENSMUST00000201148.4	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	11	0	11	0	y	1.00	2	0	2	0	y	1.00	15	0	15	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	18	0	18	0	y	1.00	4	0	4	0	y	1.00	14	0	14	0	y	1.00	7	0	7	0	y	1.00	14	0	14	0	y	ENSMUSG00000068587.11	Mgam	chr6	protein_coding	maltase-glucoamylase
novel_NIR_16133	chr6	40612208	40619913	+	40605929	40619913	A5SS	ENSMUST00000201148.4	novel	1.00	10	0	10	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	11	0	11	0	y	1.00	25	0	25	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	6	0	6	0	y	1.00	5	0	5	0	y	1.00	5	0	5	0	y	1.00	6	0	6	0	y	1.00	8	0	8	0	y	ENSMUSG00000068587.11	Mgam	chr6	protein_coding	maltase-glucoamylase
novel_NIR_16134	chr6	40620119	40621754	+	40605929	40621754	A5SS	ENSMUST00000202636.4	novel	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000068587.11	Mgam	chr6	protein_coding	maltase-glucoamylase
novel_NIR_16135	chr6	40620119	40621754	+	40620036	40621754	A5SS	ENSMUST00000201148.4	novel	0.11	1	8	1	8	n	0.38	3	5	3	5	y	0.29	7	17	7	17	y	0.00	0	14	0	14	n	0.20	6	24	6	24	y	0.11	1	8	1	8	n	0.08	1	12	1	12	n	0.19	3	13	3	13	y	0.00	0	5	0	5	n	0.14	2	12	2	12	n	0.00	0	4	0	4	n	0.10	2	18	2	18	n	ENSMUSG00000068587.11	Mgam	chr6	protein_coding	maltase-glucoamylase
novel_NIR_16136	chr6	40620154	40621754	+	40605929	40621754	A5SS	ENSMUST00000202636.4	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	5	0	5	0	y	1.00	5	0	5	0	y	1.00	6	0	6	0	y	1.00	4	0	4	0	y	1.00	8	0	8	0	y	1.00	7	0	7	0	y	1.00	6	0	6	0	y	1.00	4	0	4	0	y	1.00	13	0	13	0	y	ENSMUSG00000068587.11	Mgam	chr6	protein_coding	maltase-glucoamylase
novel_NIR_16137	chr6	40620154	40621754	+	40620036	40621754	A5SS	ENSMUST00000201148.4	novel	0.20	2	8	2	8	y	0.00	0	5	0	5	n	0.23	5	17	5	17	y	0.26	5	14	5	14	y	0.17	5	24	5	24	y	0.43	6	8	6	8	y	0.25	4	12	4	12	y	0.38	8	13	8	13	y	0.58	7	5	7	5	y	0.33	6	12	6	12	y	0.50	4	4	4	4	y	0.42	13	18	13	18	y	ENSMUSG00000068587.11	Mgam	chr6	protein_coding	maltase-glucoamylase
novel_NIR_16138	chr6	4080017	4080398	-	4080017	4086777	A5SS	ENSMUST00000203612.2	novel	-	-	-	-	-	-	0.50	2	2	2	2	y	0.73	8	3	8	3	y	-	-	-	-	-	-	0.50	2	2	2	2	y	0.89	8	1	8	1	y	0.89	8	1	8	1	y	0.67	2	1	2	1	y	1.00	4	0	4	0	y	0.80	8	2	8	2	y	1.00	5	0	5	0	y	1.00	2	0	2	0	y	ENSMUSG00000032757.7	Bet1	chr6	protein_coding	Bet1 golgi vesicular membrane trafficking protein
novel_NIR_16139	chr6	4080437	4082458	-	4081632	4082458	3pMXE	ENSMUST00000205191.2	novel	0.00	0	3	0	3	n	1.00	5	0	5	0	y	0.41	9	13	9	13	y	0.50	1	1	1	1	n	0.50	3	3	3	3	y	0.70	7	3	7	3	y	0.67	12	6	12	6	y	0.08	1	11	1	11	n	0.71	5	2	5	2	y	0.40	4	6	4	6	y	1.00	4	0	4	0	y	0.67	6	3	6	3	y	ENSMUSG00000032757.7	Bet1	chr6	protein_coding	Bet1 golgi vesicular membrane trafficking protein
novel_NIR_16140	chr6	4080437	4082458	-	4081635	4082458	3pMXE	ENSMUST00000145696.4	novel	0.00	0	7	0	7	n	1.00	5	0	5	0	y	0.31	9	20	9	20	y	0.33	1	2	1	2	n	0.33	3	6	3	6	y	0.54	7	6	7	6	y	0.67	12	6	12	6	y	0.08	1	11	1	11	n	0.62	5	3	5	3	y	1.00	4	0	4	0	y	1.00	4	0	4	0	y	0.46	6	7	6	7	y	ENSMUSG00000032757.7	Bet1	chr6	protein_coding	Bet1 golgi vesicular membrane trafficking protein
novel_NIR_16141	chr6	4084899	4086777	-	4080017	4086777	A3SS	ENSMUST00000203612.2	novel	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032757.7	Bet1	chr6	protein_coding	Bet1 golgi vesicular membrane trafficking protein
novel_NIR_16142	chr6	41589649	41590153	+	41589649	41590149	A3SS	ENSMUST00000114732.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	1.00	1	0	1	0	n	0.40	2	3	2	3	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029869.8	Ephb6	chr6	protein_coding	Eph receptor B6
novel_NIR_16143	chr6	42223565	42223722	+	42223565	42224418	A3SS	ENSMUST00000204792.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029864.8	Gstk1	chr6	protein_coding	glutathione S-transferase kappa 1
novel_NIR_16144	chr6	42223824	42224418	+	42223565	42224418	A5SS	ENSMUST00000204792.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000029864.8	Gstk1	chr6	protein_coding	glutathione S-transferase kappa 1
novel_NIR_16145	chr6	42338328	42338528	-	42338088	42338528	A3SS	ENSMUST00000204357.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000029859.7	Epha1	chr6	protein_coding	Eph receptor A1
novel_NIR_16146	chr6	42647257	42650313	-	42647257	42650287	A5SS	ENSMUST00000045054.11	novel	0.00	0	4	0	4	n	0.57	4	3	4	3	y	0.54	7	6	7	6	y	0.00	0	2	0	2	n	0.29	2	5	2	5	y	0.00	0	2	0	2	n	0.60	3	2	3	2	y	0.71	5	2	5	2	y	0.50	1	1	1	1	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.40	2	3	2	3	y	ENSMUSG00000036667.15	Tcaf1	chr6	protein_coding	TRPM8 channel-associated factor 1
novel_NIR_16147	chr6	43536946	43642694	-	43536946	43602627	5pMXE	ENSMUST00000203649.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029735.18	Tpk1	chr6	protein_coding	thiamine pyrophosphokinase
novel_NIR_16148	chr6	43560394	43588248	-	43536946	43588248	A3SS	ENSMUST00000067888.14	novel	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.09	2	20	2	20	n	0.05	1	19	1	19	n	0.00	0	4	0	4	n	0.00	0	26	0	26	n	0.00	0	13	0	13	n	0.18	2	9	2	9	y	0.00	0	18	0	18	n	0.00	0	18	0	18	n	0.00	0	15	0	15	n	ENSMUSG00000029735.18	Tpk1	chr6	protein_coding	thiamine pyrophosphokinase
novel_NIR_16149	chr6	43560394	43588248	-	43570077	43588248	3pMXE	ENSMUST00000150599.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	2	2	2	2	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000029735.18	Tpk1	chr6	protein_coding	thiamine pyrophosphokinase
novel_NIR_16150	chr6	43588319	43602627	-	43536946	43602627	A3SS	ENSMUST00000203649.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000029735.18	Tpk1	chr6	protein_coding	thiamine pyrophosphokinase
novel_NIR_16151	chr6	43642751	43642908	-	43642751	43643070	A5SS	ENSMUST00000067888.14	novel	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.20	1	4	1	4	n	0.04	1	24	1	24	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.11	2	17	2	17	n	0.11	1	8	1	8	n	0.00	0	5	0	5	n	0.00	0	24	0	24	n	0.07	1	14	1	14	n	0.18	4	18	4	18	y	ENSMUSG00000029735.18	Tpk1	chr6	protein_coding	thiamine pyrophosphokinase
novel_NIR_16152	chr6	4605839	4607983	+	4605735	4607983	A5SS	ENSMUST00000153963.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	ENSMUSG00000015189.13	Casd1	chr6	protein_coding	CAS1 domain containing 1
novel_NIR_16153	chr6	4608754	4611342	+	4608754	4619289	A3SS	ENSMUST00000141359.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	ENSMUSG00000015189.13	Casd1	chr6	protein_coding	CAS1 domain containing 1
novel_NIR_16154	chr6	4684949	4689579	-	4678110	4689579	A3SS	ENSMUST00000115577.9	novel	0.00	0	9	0	9	n	0.00	0	25	0	25	n	0.00	0	22	0	22	n	0.00	0	13	0	13	n	0.00	0	35	0	35	n	0.00	0	13	0	13	n	0.00	0	35	0	35	n	0.17	2	10	2	10	y	0.00	0	7	0	7	n	0.00	0	16	0	16	n	0.00	0	12	0	12	n	0.00	0	24	0	24	n	ENSMUSG00000004631.16	Sgce	chr6	protein_coding	sarcoglycan, epsilon
novel_NIR_16155	chr6	47507529	47508675	-	47507535	47508675	A3SS	ENSMUST00000204243.3	novel	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	17	0	17	n	0.00	0	5	0	5	n	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.20	2	8	2	8	y	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	13	0	13	n	ENSMUSG00000029687.17	Ezh2	chr6	protein_coding	enhancer of zeste 2 polycomb repressive complex 2 subunit
novel_NIR_16156	chr6	47785268	47790151	-	47784145	47790151	A3SS	ENSMUST00000204029.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	10	0	10	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	1.00	20	0	20	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000025823.10	Pdia4	chr6	protein_coding	protein disulfide isomerase associated 4
novel_NIR_16157	chr6	47832391	47835863	+	47812854	47835863	A5SS	ENSMUST00000114598.3	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000062519.14	Zfp398	chr6	protein_coding	zinc finger protein 398
novel_NIR_16158	chr6	47832391	47835863	+	47817581	47835863	A5SS	ENSMUST00000079881.11	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	1.00	1	0	1	0	n	0.17	1	5	1	5	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	ENSMUSG00000062519.14	Zfp398	chr6	protein_coding	zinc finger protein 398
novel_NIR_16159	chr6	47906064	47907648	+	47906064	47907645	A3SS	ENSMUST00000009411.9	novel	0.00	0	7	0	7	n	0.11	1	8	1	8	n	0.05	1	19	1	19	n	0.00	0	9	0	9	n	0.15	2	11	2	11	y	0.22	2	7	2	7	y	0.09	1	10	1	10	n	0.00	0	4	0	4	n	0.10	1	9	1	9	n	0.17	2	10	2	10	y	0.11	2	16	2	16	n	0.06	1	15	1	15	n	ENSMUSG00000052763.8	Zfp212	chr6	protein_coding	Zinc finger protein 212
novel_NIR_16160	chr6	47934536	47938670	+	47934536	47939459	A3SS	ENSMUST00000101445.11	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000045466.19	Zfp956	chr6	protein_coding	zinc finger protein 956
novel_NIR_16161	chr6	48021635	48022431	-	48021635	48024566	A5SS	ENSMUST00000125385.2	novel	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.60	3	2	3	2	y	ENSMUSG00000071477.11	Zfp777	chr6	protein_coding	zinc finger protein 777
novel_NIR_16162	chr6	48021635	48022431	-	48021635	48024920	A5SS	ENSMUST00000114583.8	novel	0.00	0	6	0	6	n	0.67	2	1	2	1	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.80	4	1	4	1	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	1.00	3	0	3	0	y	ENSMUSG00000071477.11	Zfp777	chr6	protein_coding	zinc finger protein 777
novel_NIR_16163	chr6	48021635	48022431	-	48021635	48025627	A5SS	ENSMUST00000095944.10	novel	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.80	4	1	4	1	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.50	3	3	3	3	y	ENSMUSG00000071477.11	Zfp777	chr6	protein_coding	zinc finger protein 777
novel_NIR_16164	chr6	48021635	48022709	-	48021635	48024566	A5SS	ENSMUST00000125385.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	ENSMUSG00000071477.11	Zfp777	chr6	protein_coding	zinc finger protein 777
novel_NIR_16165	chr6	48021635	48022709	-	48021635	48024920	A5SS	ENSMUST00000114583.8	novel	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	ENSMUSG00000071477.11	Zfp777	chr6	protein_coding	zinc finger protein 777
novel_NIR_16166	chr6	48021635	48022709	-	48021635	48025627	A5SS	ENSMUST00000095944.10	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	0.25	1	3	1	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	ENSMUSG00000071477.11	Zfp777	chr6	protein_coding	zinc finger protein 777
novel_NIR_16167	chr6	48021635	48022709	-	48022533	48022709	3pMXE	ENSMUST00000203645.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000108101.2	Gm45738	chr6	lncRNA	predicted gene 45738
novel_NIR_16168	chr6	48044294	48060027	-	48044294	48059088	5pMXE	ENSMUST00000204771.2	novel	0.41	11	16	11	16	y	0.08	2	23	2	23	n	0.11	4	33	4	33	n	0.11	4	31	4	31	n	0.18	8	37	8	37	y	0.00	0	17	0	17	n	0.07	2	26	2	26	n	0.10	2	18	2	18	n	0.32	9	19	9	19	y	0.29	9	22	9	22	y	0.00	0	15	0	15	n	0.18	5	23	5	23	y	ENSMUSG00000057691.9	Zfp746	chr6	protein_coding	zinc finger protein 746
novel_NIR_16169	chr6	48044294	48060027	-	48044294;48059201	48059088;48060027	ES	ENSMUST00000073124.9	novel	0.29	11	27.0	11	16;38	y	0.07	2	25.5	2	23;28	n	0.09	4	38.5	4	33;44	n	0.11	4	32.0	4	31;33	n	0.15	8	45.0	8	37;53	y	0.00	0	20.0	0	17;23	n	0.06	2	33.5	2	26;41	n	0.07	2	25.0	2	18;32	n	0.28	9	23.5	9	19;28	y	0.23	9	30.0	9	22;38	y	0.00	0	20.0	0	15;25	n	0.14	5	30.0	5	23;37	n	ENSMUSG00000057691.9	Zfp746	chr6	protein_coding	zinc finger protein 746
novel_NIR_16170	chr6	48060153	48060240	-	48060108	48060240	A3SS	ENSMUST00000073124.9	novel	0.12	4	28	4	28	n	0.00	0	45	0	45	n	0.11	4	33	4	33	n	0.07	2	25	2	25	n	0.10	7	63	7	63	n	0.04	1	27	1	27	n	0.00	0	51	0	51	n	0.00	0	33	0	33	n	0.06	2	31	2	31	n	0.05	2	39	2	39	n	0.03	1	32	1	32	n	0.15	5	29	5	29	y	ENSMUSG00000057691.9	Zfp746	chr6	protein_coding	zinc finger protein 746
novel_NIR_16171	chr6	48379930	48380312	+	48372821	48380312	A5SS	ENSMUST00000031815.12	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000042810.15	Krba1	chr6	protein_coding	KRAB-A domain containing 1
novel_NIR_16172	chr6	48379930	48380312	+	48379944	48380312	A5SS	ENSMUST00000114571.8	novel	0.00	0	5	0	5	n	0.00	0	15	0	15	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.04	1	26	1	26	n	0.00	0	10	0	10	n	0.00	0	18	0	18	n	0.00	0	18	0	18	n	0.30	3	7	3	7	y	0.00	0	16	0	16	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	ENSMUSG00000042810.15	Krba1	chr6	protein_coding	KRAB-A domain containing 1
novel_NIR_16173	chr6	48383913	48384607	+	48383941	48384607	A5SS	ENSMUST00000114571.8	novel	0.08	1	11	1	11	n	0.00	0	9	0	9	n	0.07	1	14	1	14	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.15	2	11	2	11	y	0.43	3	4	3	4	y	0.00	0	14	0	14	n	0.12	2	14	2	14	n	0.13	2	13	2	13	n	0.00	0	10	0	10	n	ENSMUSG00000042810.15	Krba1	chr6	protein_coding	KRAB-A domain containing 1
novel_NIR_16174	chr6	48390437	48391424	+	48390437;48391085	48390990;48391424	ES	ENSMUST00000114571.8	novel	0.00	0	17.0	0	18;16	n	0.00	0	13.0	0	11;15	n	0.15	2	11.5	2	9;14	y	0.00	0	15.5	0	14;17	n	0.00	0	21.0	0	25;17	n	0.00	0	16.0	0	17;15	n	0.00	0	19.0	0	16;22	n	0.00	0	16.5	0	17;16	n	0.00	0	13.0	0	9;17	n	0.00	0	18.0	0	11;25	n	0.00	0	16.0	0	17;15	n	0.00	0	16.0	0	15;17	n	ENSMUSG00000042810.15	Krba1	chr6	protein_coding	KRAB-A domain containing 1
novel_NIR_16175	chr6	48391534	48392514	+	48391534	48392510	A3SS	ENSMUST00000114571.8	novel	0.00	0	21	0	21	n	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.00	0	19	0	19	n	0.00	0	28	0	28	n	0.00	0	2	0	2	n	0.00	0	16	0	16	n	0.00	0	12	0	12	n	0.28	5	13	5	13	y	0.13	4	27	4	27	n	0.06	1	17	1	17	n	0.00	0	12	0	12	n	ENSMUSG00000042810.15	Krba1	chr6	protein_coding	KRAB-A domain containing 1
novel_NIR_16176	chr6	48411165	48418881	-	48411165;48418765	48418710;48418881	ES	ENSMUST00000114563.8	novel	0.00	0	3.5	0	0;7	n	0.67	2	1.0	2	0;2	y	0.00	0	3.5	0	0;7	n	0.00	0	2.0	0	2;2	n	0.27	2	5.5	2	0;11	y	0.00	0	2.0	0	0;4	n	0.14	1	6.0	1	0;12	n	0.00	0	3.5	0	0;7	n	0.00	0	2.0	0	0;4	n	0.00	0	4.5	0	0;9	n	0.50	1	1.0	1	0;2	n	0.13	1	6.5	1	0;13	n	ENSMUSG00000068551.13	Zfp467	chr6	protein_coding	zinc finger protein 467
novel_NIR_16177	chr6	48411165	48418881	-	48416291	48418881	3pMXE	ENSMUST00000114559.8	novel	0.00	0	3	0	3	n	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.40	2	3	2	3	y	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.14	1	6	1	6	n	ENSMUSG00000068551.13	Zfp467	chr6	protein_coding	zinc finger protein 467
novel_NIR_16178	chr6	48411165	48418881	-	48416388	48418881	3pMXE	ENSMUST00000114560.8	novel	0.00	0	16	0	16	n	0.17	2	10	2	10	y	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.12	2	15	2	15	n	0.00	0	9	0	9	n	0.10	1	9	1	9	n	0.00	0	9	0	9	n	0.00	0	16	0	16	n	0.00	0	22	0	22	n	0.12	1	7	1	7	n	0.05	1	20	1	20	n	ENSMUSG00000068551.13	Zfp467	chr6	protein_coding	zinc finger protein 467
novel_NIR_16179	chr6	48416024	48418881	-	48416291	48418881	A3SS	ENSMUST00000114559.8	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.17	1	5	1	5	n	0.50	3	3	3	3	y	0.00	0	6	0	6	n	ENSMUSG00000068551.13	Zfp467	chr6	protein_coding	zinc finger protein 467
novel_NIR_16180	chr6	48416024	48418881	-	48416388	48418881	A3SS	ENSMUST00000114560.8	novel	0.00	0	16	0	16	n	0.00	0	10	0	10	n	0.10	1	9	1	9	n	0.11	1	8	1	8	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.06	1	16	1	16	n	0.04	1	22	1	22	n	0.30	3	7	3	7	y	0.00	0	20	0	20	n	ENSMUSG00000068551.13	Zfp467	chr6	protein_coding	zinc finger protein 467
novel_NIR_16181	chr6	48416024	48418881	-	48418765	48418881	A3SS&ES	ENSMUST00000114563.8	novel	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.12	1	7	1	7	n	0.33	1	2	1	2	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.20	1	4	1	4	n	0.10	1	9	1	9	n	0.60	3	2	3	2	y	0.00	0	13	0	13	n	ENSMUSG00000068551.13	Zfp467	chr6	protein_coding	zinc finger protein 467
novel_NIR_16182	chr6	48419672	48421905	-	48419672	48419770	A5SS&ES	ENSMUST00000141449.2	novel	0.60	3	2	3	2	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.40	2	3	2	3	y	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.20	1	4	1	4	n	ENSMUSG00000068551.13	Zfp467	chr6	protein_coding	zinc finger protein 467
novel_NIR_16183	chr6	48419672	48421905	-	48419672	48422287	A5SS	ENSMUST00000114564.8	novel	0.38	3	5	3	5	y	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.20	2	8	2	8	y	-	-	-	-	-	-	0.12	1	7	1	7	n	0.00	0	5	0	5	n	0.09	1	10	1	10	n	0.09	1	10	1	10	n	0.00	0	9	0	9	n	0.17	1	5	1	5	n	ENSMUSG00000068551.13	Zfp467	chr6	protein_coding	zinc finger protein 467
novel_NIR_16184	chr6	48419672	48421905	-	48419672;48420421	48420346;48421905	ES	ENSMUST00000114559.8	novel	0.20	3	12.0	3	23;1	y	0.00	0	14.0	0	27;1	n	0.00	0	4.0	0	8;0	n	0.00	0	18.0	0	35;1	n	0.10	2	17.5	2	32;3	n	0.00	0	5.0	0	10;0	n	0.06	1	16.0	1	29;3	n	0.00	0	5.5	0	11;0	n	0.05	1	19.0	1	33;5	n	0.03	1	31.5	1	61;2	n	0.00	0	22.5	0	37;8	n	0.04	1	27.0	1	43;11	n	ENSMUSG00000068551.13	Zfp467	chr6	protein_coding	zinc finger protein 467
novel_NIR_16185	chr6	48420421	48421750	-	48420421	48420915	5pMXE	ENSMUST00000114566.8	novel	0.00	0	9	0	9	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.25	1	3	1	3	n	ENSMUSG00000068551.13	Zfp467	chr6	protein_coding	zinc finger protein 467
novel_NIR_16186	chr6	48420421	48421750	-	48420421	48421905	A5SS	ENSMUST00000114559.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.20	2	8	2	8	y	0.08	1	11	1	11	n	ENSMUSG00000068551.13	Zfp467	chr6	protein_coding	zinc finger protein 467
novel_NIR_16187	chr6	48425613	48426299	+	48425613;48426122	48426040;48426299	ES	ENSMUST00000212740.2	novel	0.80	2	0.5	2	1;0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	0.5	0	0;1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	0.5	0	0;1	n	0.00	0	1.0	0	0;2	n	-	-	-	-	-	-	ENSMUSG00000029797.14	Sspo	chr6	protein_coding	SCO-spondin
novel_NIR_16188	chr6	48570986	48573230	+	48570986	48571725	A3SS&ES	ENSMUST00000009420.15	novel	0.18	3	14	3	14	y	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.00	0	31	0	31	n	0.09	3	32	3	32	n	0.00	0	8	0	8	n	0.00	0	28	0	28	n	0.00	0	16	0	16	n	0.00	0	19	0	19	n	0.11	3	25	3	25	n	0.10	2	19	2	19	n	0.07	2	28	2	28	n	ENSMUSG00000052751.17	Repin1	chr6	protein_coding	replication initiator 1
novel_NIR_16189	chr6	48570986	48573230	+	48570986	48573227	A3SS	ENSMUST00000154010.8	novel	0.25	3	9	3	9	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.50	3	3	3	3	y	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	3	3	3	3	y	0.40	2	3	2	3	y	0.18	2	9	2	9	y	ENSMUSG00000052751.17	Repin1	chr6	protein_coding	replication initiator 1
novel_NIR_16190	chr6	48570986	48590112	+	48567015	48590112	A5SS	ENSMUST00000204521.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000107588.2	Gm45021	chr6	protein_coding	predicted gene 45021
novel_NIR_16191	chr6	48570986	48590112	+	48570986	48573227	3pMXE	ENSMUST00000154010.8	novel	0.00	0	9	0	9	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.40	2	3	2	3	y	0.00	0	9	0	9	n	ENSMUSG00000052751.17	Repin1	chr6	protein_coding	replication initiator 1
novel_NIR_16192	chr6	48570986	48590112	+	48570986;48571910	48571725;48590112	ES	ENSMUST00000204879.2	novel	0.00	0	7.0	0	14;0	n	0.00	0	7.5	0	15;0	n	0.00	0	7.0	0	13;1	n	0.00	0	15.5	0	31;0	n	0.10	2	17.5	2	32;3	n	0.00	0	4.0	0	8;0	n	0.00	0	15.0	0	28;2	n	0.00	0	8.0	0	16;0	n	0.00	0	10.5	0	19;2	n	0.07	1	12.5	1	25;0	n	0.17	2	9.5	2	19;0	y	0.00	0	15.0	0	28;2	n	ENSMUSG00000107789.2	Gm44965	chr6	protein_coding	predicted gene 44965
novel_NIR_16193	chr6	48570986	48590112	+	48570986;48571910	48571796;48590112	ES	ENSMUST00000204121.2	novel	0.00	0	11.0	0	22;0	n	0.00	0	8.5	0	17;0	n	0.00	0	11.5	0	22;1	n	0.00	0	13.0	0	26;0	n	0.07	2	25.5	2	48;3	n	0.00	0	5.5	0	11;0	n	0.00	0	17.0	0	32;2	n	0.00	0	5.0	0	10;0	n	0.00	0	17.0	0	32;2	n	0.10	1	9.5	1	19;0	n	0.18	2	9.0	2	18;0	y	0.00	0	17.5	0	33;2	n	ENSMUSG00000107789.2	Gm44965	chr6	protein_coding	predicted gene 44965
novel_NIR_16194	chr6	48570986	48590112	+	48579054	48590112	5pMXE	ENSMUST00000204095.3	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.40	2	3	2	3	y	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.67	2	1	2	1	y	-	-	-	-	-	-	ENSMUSG00000007216.7	Zfp775	chr6	protein_coding	zinc finger protein 775
novel_NIR_16195	chr6	48570986	48590112	+	48582572	48590112	5pMXE	ENSMUST00000204042.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000007216.7	Zfp775	chr6	protein_coding	zinc finger protein 775
novel_NIR_16196	chr6	48571724	48573227	+	48570986	48573227	A5SS	ENSMUST00000154010.8	novel	0.00	0	9	0	9	n	0.20	1	4	1	4	n	-	-	-	-	-	-	0.10	1	9	1	9	n	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.10	1	9	1	9	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	3	3	3	3	y	0.00	0	3	0	3	n	0.25	3	9	3	9	y	ENSMUSG00000052751.17	Repin1	chr6	protein_coding	replication initiator 1
novel_NIR_16197	chr6	48571910	48573230	+	48571910	48573227	A3SS	ENSMUST00000009420.15	novel	0.38	11	18	11	18	y	0.36	14	25	14	25	y	0.36	12	21	12	21	y	0.39	22	34	22	34	y	0.36	26	47	26	47	y	0.45	9	11	9	11	y	0.52	25	23	25	23	y	0.22	7	25	7	25	y	0.44	22	28	22	28	y	0.46	25	29	25	29	y	0.47	23	26	23	26	y	0.40	20	30	20	30	y	ENSMUSG00000052751.17	Repin1	chr6	protein_coding	replication initiator 1
novel_NIR_16198	chr6	48571910	48573230	+	48571910	48590112	A3SS	ENSMUST00000204879.2	novel	1.00	11	0	11	0	y	1.00	14	0	14	0	y	0.92	12	1	12	1	y	1.00	22	0	22	0	y	0.90	26	3	26	3	y	1.00	9	0	9	0	y	0.93	25	2	25	2	y	1.00	7	0	7	0	y	0.92	22	2	22	2	y	1.00	25	0	25	0	y	1.00	23	0	23	0	y	0.91	20	2	20	2	y	ENSMUSG00000107789.2	Gm44965	chr6	protein_coding	predicted gene 44965
novel_NIR_16199	chr6	4857377	5045936	+	4906844	5045936	5pMXE	ENSMUST00000177153.8	novel	0.50	1	1	1	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	ENSMUSG00000032827.16	Ppp1r9a	chr6	protein_coding	protein phosphatase 1, regulatory subunit 9A
novel_NIR_16200	chr6	48574977	48590112	+	48567015	48590112	A5SS	ENSMUST00000204521.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000107588.2	Gm45021	chr6	protein_coding	predicted gene 45021
novel_NIR_16201	chr6	48574977	48590112	+	48571910	48590112	A5SS	ENSMUST00000204879.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000107789.2	Gm44965	chr6	protein_coding	predicted gene 44965
novel_NIR_16202	chr6	48574977	48590112	+	48579054	48590112	5pMXE	ENSMUST00000204095.3	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.40	2	3	2	3	y	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000007216.7	Zfp775	chr6	protein_coding	zinc finger protein 775
novel_NIR_16203	chr6	48574977	48590112	+	48582572	48590112	5pMXE	ENSMUST00000204042.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000007216.7	Zfp775	chr6	protein_coding	zinc finger protein 775
novel_NIR_16204	chr6	48590247	48596159	+	48590193	48596159	A5SS	ENSMUST00000204121.2	novel	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.40	2	3	2	3	y	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.09	1	10	1	10	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	ENSMUSG00000107789.2	Gm44965	chr6	protein_coding	predicted gene 44965
novel_NIR_16205	chr6	48654849	48655433	+	48654849	48655791	A3SS	ENSMUST00000147936.2	novel	0.00	0	20	0	20	n	0.05	2	41	2	41	n	0.00	0	15	0	15	n	0.00	0	28	0	28	n	0.21	3	11	3	11	y	0.00	0	9	0	9	n	0.08	2	23	2	23	n	0.09	1	10	1	10	n	0.00	0	16	0	16	n	0.00	0	24	0	24	n	0.00	0	19	0	19	n	0.10	2	19	2	19	n	ENSMUSG00000051124.7	Gimap9	chr6	protein_coding	GTPase, IMAP family member 9
novel_NIR_16206	chr6	48654849	48655475	+	48654849	48655791	A3SS	ENSMUST00000147936.2	novel	0.00	0	20	0	20	n	0.05	2	41	2	41	n	0.00	0	15	0	15	n	0.00	0	28	0	28	n	0.15	2	11	2	11	y	0.00	0	9	0	9	n	0.12	3	23	3	23	n	0.09	1	10	1	10	n	0.06	1	16	1	16	n	0.00	0	24	0	24	n	0.00	0	19	0	19	n	0.00	0	19	0	19	n	ENSMUSG00000051124.7	Gimap9	chr6	protein_coding	GTPase, IMAP family member 9
novel_NIR_16207	chr6	48654849	48655794	+	48654849	48655791	A3SS	ENSMUST00000147936.2	novel	0.31	9	20	9	20	y	0.32	19	41	19	41	y	0.29	6	15	6	15	y	0.18	6	28	6	28	y	0.42	8	11	8	11	y	0.31	4	9	4	9	y	0.32	11	23	11	23	y	0.52	11	10	11	10	y	0.27	6	16	6	16	y	0.29	10	24	10	24	y	0.37	11	19	11	19	y	0.34	10	19	10	19	y	ENSMUSG00000051124.7	Gimap9	chr6	protein_coding	GTPase, IMAP family member 9
novel_NIR_16208	chr6	48667447	48667715	+	48667447	48667711	A3SS	ENSMUST00000156770.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000054435.17	Gimap4	chr6	protein_coding	GTPase, IMAP family member 4
novel_NIR_16209	chr6	48667882	48668436	+	48667882	48668332	A3SS	ENSMUST00000067506.14	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.60	3	2	3	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000054435.17	Gimap4	chr6	protein_coding	GTPase, IMAP family member 4
novel_NIR_16210	chr6	48667882	48668436	+	48667882	48668346	A3SS	ENSMUST00000121957.8	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000054435.17	Gimap4	chr6	protein_coding	GTPase, IMAP family member 4
novel_NIR_16211	chr6	48716090	48718220	+	48716090	48718254	A3SS	ENSMUST00000204408.2	novel	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	ENSMUSG00000098715.7	Gm28053	chr6	protein_coding	predicted gene, 28053
novel_NIR_16212	chr6	48716090	48718220	+	48716090	48718260	A3SS	ENSMUST00000204168.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000090019.6	Gimap1	chr6	protein_coding	GTPase, IMAP family member 1
novel_NIR_16213	chr6	48719336	48719433	+	48718351	48719433	A5SS	ENSMUST00000054368.7	novel	0.43	3	4	3	4	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.20	1	4	1	4	n	ENSMUSG00000090019.6	Gimap1	chr6	protein_coding	GTPase, IMAP family member 1
novel_NIR_16214	chr6	48815296	48817284	-	48815296	48816272	A5SS&ES	ENSMUST00000203355.3	novel	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.14	1	6	1	6	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.18	2	9	2	9	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	5	0	5	n	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
novel_NIR_16215	chr6	48815296	48818282	-	48815296	48817634	5pMXE	ENSMUST00000205159.3	novel	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.20	1	4	1	4	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.33	2	4	2	4	y	0.00	0	7	0	7	n	0.14	1	6	1	6	n	1.00	2	0	2	0	y	0.00	0	4	0	4	n	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
novel_NIR_16216	chr6	48815296	48818282	-	48815299	48818282	A3SS	ENSMUST00000205147.3	novel	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	16	0	16	n	0.10	1	9	1	9	n	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.22	2	7	2	7	y	0.00	0	10	0	10	n	0.07	1	13	1	13	n	0.22	2	7	2	7	y	0.00	0	11	0	11	n	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
novel_NIR_16217	chr6	48815296;48815620	48815409;48817295	-	48815296;48816379	48816272;48817295	MXE	ENSMUST00000203355.3	novel	0.00	0.0	7.5	0;0	6;9	n	0.00	0.0	9.0	0;0	6;12	n	0.19	3.0	13.0	2;4	6;20	y	0.00	0.0	7.0	0;0	7;7	n	0.03	0.5	15.5	1;0	8;23	n	0.07	1.0	12.5	0;2	7;18	n	0.00	0.0	11.5	0;0	9;14	n	0.00	0.0	8.0	0;0	4;12	n	0.00	0.0	2.5	0;0	3;2	n	0.14	0.5	3.0	0;1	0;6	n	0.00	0.0	4.0	0;0	4;4	n	0.00	0.0	6.5	0;0	5;8	n	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
novel_NIR_16218	chr6	48815299	48815409	-	48815299	48818282	A5SS	ENSMUST00000205147.3	novel	0.11	1	8	1	8	n	0.20	2	8	2	8	y	0.11	2	16	2	16	n	0.10	1	9	1	9	n	0.11	2	17	2	17	n	0.31	4	9	4	9	y	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.12	1	7	1	7	n	0.00	0	11	0	11	n	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
novel_NIR_16219	chr6	48815299	48817634	-	48815296	48817634	A3SS	ENSMUST00000205159.3	novel	1.00	1	0	1	0	n	0.31	4	9	4	9	y	0.00	0	14	0	14	n	0.43	3	4	3	4	y	0.45	5	6	5	6	y	0.17	1	5	1	5	n	0.07	1	13	1	13	n	0.20	1	4	1	4	n	0.00	0	7	0	7	n	0.33	3	6	3	6	y	-	-	-	-	-	-	0.50	4	4	4	4	y	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
novel_NIR_16220	chr6	48815299	48817634	-	48815299	48818282	A5SS	ENSMUST00000205147.3	novel	0.11	1	8	1	8	n	0.33	4	8	4	8	y	0.00	0	16	0	16	n	0.25	3	9	3	9	y	0.23	5	17	5	17	y	0.10	1	9	1	9	n	0.08	1	12	1	12	n	0.12	1	7	1	7	n	0.00	0	10	0	10	n	0.19	3	13	3	13	y	0.00	0	7	0	7	n	0.27	4	11	4	11	y	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
novel_NIR_16221	chr6	48815620	48817295	-	48813271	48817295	A3SS	ENSMUST00000204783.3	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.67	4	2	4	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
novel_NIR_16222	chr6	48816288	48817295	-	48813271	48817295	A3SS	ENSMUST00000204783.3	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	3	3	3	3	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
novel_NIR_16223	chr6	48816459	48817295	-	48813271	48817295	A3SS	ENSMUST00000204783.3	novel	0.75	6	2	6	2	y	0.94	15	1	15	1	y	0.88	15	2	15	2	y	0.88	7	1	7	1	y	1.00	6	0	6	0	y	0.50	3	3	3	3	y	0.75	3	1	3	1	y	1.00	11	0	11	0	y	1.00	2	0	2	0	y	0.85	11	2	11	2	y	0.00	0	5	0	5	n	-	-	-	-	-	-	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
novel_NIR_16224	chr6	48816459	48817295	-	48816379	48817295	A3SS	ENSMUST00000203355.3	novel	0.40	6	9	6	9	y	0.56	15	12	15	12	y	0.43	15	20	15	20	y	0.50	7	7	7	7	y	0.21	6	23	6	23	y	0.14	3	18	3	18	n	0.18	3	14	3	14	y	0.48	11	12	11	12	y	0.50	2	2	2	2	y	0.65	11	6	11	6	y	0.00	0	4	0	4	n	0.00	0	8	0	8	n	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
novel_NIR_16225	chr6	48816555	48817295	-	48813271	48817295	A3SS	ENSMUST00000204783.3	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.67	4	2	4	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
novel_NIR_16226	chr6	48816555	48817295	-	48816379	48817295	A3SS	ENSMUST00000203355.3	novel	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.17	4	20	4	20	y	0.00	0	7	0	7	n	0.00	0	23	0	23	n	0.00	0	18	0	18	n	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
novel_NIR_16227	chr6	48816746	48817295	-	48813271	48817295	A3SS	ENSMUST00000204783.3	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
novel_NIR_16228	chr6	48816746	48817295	-	48816379	48817295	A3SS	ENSMUST00000203355.3	novel	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	20	0	20	n	0.00	0	7	0	7	n	0.00	0	23	0	23	n	0.00	0	18	0	18	n	0.18	3	14	3	14	y	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
novel_NIR_16229	chr6	48817332	48817634	-	48815296	48817634	A3SS	ENSMUST00000205159.3	novel	1.00	6	0	6	0	y	0.36	5	9	5	9	n	0.00	0	14	0	14	n	0.20	1	4	1	4	n	0.62	10	6	10	6	y	0.50	5	5	5	5	y	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.14	1	6	1	6	n	1.00	1	0	1	0	n	0.43	3	4	3	4	y	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
novel_NIR_16230	chr6	48817332	48817634	-	48817387	48817634	A3SS	ENSMUST00000203265.3	novel	0.26	6	17	6	17	y	0.26	5	14	5	14	y	0.00	0	8	0	8	n	0.12	1	7	1	7	n	0.25	10	30	10	30	y	0.26	5	14	5	14	y	0.00	0	8	0	8	n	0.00	0	18	0	18	n	0.17	1	5	1	5	n	0.08	1	11	1	11	n	0.11	1	8	1	8	n	0.33	3	6	3	6	y	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
novel_NIR_16231	chr6	48817382	48817634	-	48815296	48817634	A3SS	ENSMUST00000205159.3	novel	-	-	-	-	-	-	0.00	0	9	0	9	n	0.18	3	14	3	14	n	0.43	3	4	3	4	y	0.00	0	6	0	6	n	0.17	1	5	1	5	n	0.13	2	13	2	13	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
novel_NIR_16232	chr6	48817382	48817634	-	48817387	48817634	A3SS	ENSMUST00000203265.3	novel	0.00	0	17	0	17	n	0.00	0	14	0	14	n	0.27	3	8	3	8	y	0.30	3	7	3	7	y	0.00	0	30	0	30	n	0.07	1	14	1	14	n	0.20	2	8	2	8	y	0.00	0	18	0	18	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
novel_NIR_16233	chr6	48817382	48817930	-	48815296	48817930	A3SS	ENSMUST00000204073.3	novel	0.06	9	143	9	143	n	0.17	30	150	30	150	n	0.12	26	200	26	200	n	0.10	20	176	20	176	n	0.13	37	239	37	239	n	0.21	30	113	30	113	y	0.10	26	223	26	223	n	0.14	27	168	27	168	n	0.12	17	127	17	127	n	0.15	31	177	31	177	y	0.08	11	121	11	121	n	0.13	25	171	25	171	n	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
novel_NIR_16234	chr6	48817387	48817716	-	48817387	48818282	A5SS	ENSMUST00000203355.3	novel	-	-	-	-	-	-	0.25	2	6	2	6	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.20	1	4	1	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
novel_NIR_16235	chr6	48817387	48817788	-	48817387	48817634	5pMXE	ENSMUST00000203265.3	novel	0.00	0	17	0	17	n	0.00	0	14	0	14	n	0.38	5	8	5	8	y	0.00	0	7	0	7	n	0.19	7	30	7	30	y	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.25	6	18	6	18	y	0.17	1	5	1	5	n	0.15	2	11	2	11	y	0.11	1	8	1	8	n	0.40	4	6	4	6	y	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
novel_NIR_16236	chr6	48817387	48817788	-	48817387	48818282	A5SS	ENSMUST00000203355.3	novel	-	-	-	-	-	-	0.00	0	6	0	6	n	0.50	5	5	5	5	y	-	-	-	-	-	-	0.64	7	4	7	4	y	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	1	0	1	0	n	0.40	2	3	2	3	y	0.33	1	2	1	2	n	0.80	4	1	4	1	y	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
novel_NIR_16237	chr6	48817387	48817902	-	48817387	48817634	5pMXE	ENSMUST00000203265.3	novel	0.06	1	17	1	17	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	30	0	30	n	0.00	0	14	0	14	n	0.50	8	8	8	8	y	0.00	0	18	0	18	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.27	3	8	3	8	y	0.00	0	6	0	6	n	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
novel_NIR_16238	chr6	48817387	48817902	-	48817387	48818282	A5SS	ENSMUST00000203355.3	novel	1.00	1	0	1	0	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	1.00	8	0	8	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.60	3	2	3	2	y	0.00	0	1	0	1	n	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
novel_NIR_16239	chr6	48817387	48818538	-	48817387	48818282	5pMXE	ENSMUST00000203355.3	novel	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
novel_NIR_16240	chr6	4903031	5045936	+	4903031;4906844	4905226;5045936	ES	ENSMUST00000175889.8	novel	0.00	0	0.5	0	0;1	n	0.00	0	0.5	0	0;1	n	0.00	0	1.0	0	2;0	n	0.00	0	2.5	0	0;5	n	0.25	1	3.0	1	4;2	n	0.75	3	1.0	3	0;2	y	0.00	0	1.5	0	0;3	n	0.00	0	2.5	0	0;5	n	0.00	0	2.0	0	1;3	n	0.00	0	1.5	0	0;3	n	0.00	0	0.5	0	0;1	n	0.00	0	0.5	0	0;1	n	ENSMUSG00000032827.16	Ppp1r9a	chr6	protein_coding	protein phosphatase 1, regulatory subunit 9A
novel_NIR_16241	chr6	4903031	5045936	+	4906844	5045936	5pMXE	ENSMUST00000177153.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.60	3	2	3	2	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000032827.16	Ppp1r9a	chr6	protein_coding	protein phosphatase 1, regulatory subunit 9A
novel_NIR_16242	chr6	49057192	49059779	+	49051037	49059779	A5SS	ENSMUST00000114500.3	novel	0.25	1	3	1	3	n	0.14	1	6	1	6	n	0.62	5	3	5	3	y	0.00	0	7	0	7	n	0.38	5	8	5	8	y	0.43	3	4	3	4	y	0.22	2	7	2	7	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.44	4	5	4	5	y	0.00	0	8	0	8	n	0.00	0	7	0	7	n	ENSMUSG00000029815.13	Malsu1	chr6	protein_coding	mitochondrial assembly of ribosomal large subunit 1
novel_NIR_16243	chr6	49229449	49229731	-	49229449	49229737	A5SS	ENSMUST00000203820.3	novel	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	7	0	7	0	y	1.00	7	0	7	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	7	0	7	0	y	-	-	-	-	-	-	ENSMUSG00000029817.12	Tra2a	chr6	protein_coding	transformer 2 alpha
novel_NIR_16244	chr6	49229449	49229731	-	49229449	49240772	A5SS	ENSMUST00000204189.3	novel	0.22	4	14	4	14	y	0.06	1	16	1	16	n	0.58	7	5	7	5	y	0.26	7	20	7	20	y	0.07	2	26	2	26	n	0.00	0	22	0	22	n	0.37	7	12	7	12	y	0.24	4	13	4	13	y	0.06	1	15	1	15	n	0.14	4	25	4	25	n	0.37	7	12	7	12	y	0.00	0	20	0	20	n	ENSMUSG00000029817.12	Tra2a	chr6	protein_coding	transformer 2 alpha
novel_NIR_16245	chr6	49229449	49229742	-	49229449	49229737	A5SS	ENSMUST00000203820.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029817.12	Tra2a	chr6	protein_coding	transformer 2 alpha
novel_NIR_16246	chr6	49229449	49229742	-	49229449	49240772	A5SS	ENSMUST00000204189.3	novel	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.29	2	5	2	5	y	0.05	1	20	1	20	n	0.00	0	26	0	26	n	0.00	0	22	0	22	n	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.17	3	15	3	15	y	0.00	0	25	0	25	n	0.00	0	12	0	12	n	0.00	0	20	0	20	n	ENSMUSG00000029817.12	Tra2a	chr6	protein_coding	transformer 2 alpha
novel_NIR_16247	chr6	49306437	49310845	+	49296414	49310845	A5SS	ENSMUST00000055559.8	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.67	4	2	4	2	y	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000050786.9	Ccdc126	chr6	protein_coding	coiled-coil domain containing 126
novel_NIR_16248	chr6	50087868	50120699	+	50087434	50120699	A5SS	ENSMUST00000036225.15	novel	0.00	0	7	0	7	n	0.45	5	6	5	6	y	0.60	3	2	3	2	y	0.20	2	8	2	8	y	0.33	3	6	3	6	y	0.00	0	5	0	5	n	0.36	4	7	4	7	y	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.22	2	7	2	7	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	ENSMUSG00000038388.15	Mpp6	chr6	protein_coding	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)
novel_NIR_16249	chr6	50087868	50120699	+	50088107	50120699	A5SS	ENSMUST00000167628.2	novel	0.00	0	3	0	3	n	0.62	5	3	5	3	y	0.19	3	13	3	13	y	0.50	2	2	2	2	y	0.16	3	16	3	16	y	0.00	0	5	0	5	n	0.21	4	15	4	15	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.20	2	8	2	8	y	0.00	0	7	0	7	n	0.00	0	10	0	10	n	ENSMUSG00000038388.15	Mpp6	chr6	protein_coding	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)
novel_NIR_16250	chr6	50088107	50119687	+	50088107	50120699	A3SS	ENSMUST00000167628.2	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.00	0	2	0	2	n	0.00	0	16	0	16	n	0.00	0	5	0	5	n	0.00	0	15	0	15	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.20	2	8	2	8	y	0.00	0	7	0	7	n	0.00	0	10	0	10	n	ENSMUSG00000038388.15	Mpp6	chr6	protein_coding	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)
novel_NIR_16251	chr6	50088107	50135662	+	50129003	50135662	A5SS&ES	ENSMUST00000171601.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038388.15	Mpp6	chr6	protein_coding	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)
novel_NIR_16252	chr6	50102403	50120699	+	50087434	50120699	A5SS	ENSMUST00000036225.15	novel	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.29	2	5	2	5	y	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	ENSMUSG00000038388.15	Mpp6	chr6	protein_coding	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)
novel_NIR_16253	chr6	50102403	50120699	+	50088107	50120699	A5SS	ENSMUST00000167628.2	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.00	0	2	0	2	n	0.00	0	16	0	16	n	0.29	2	5	2	5	y	0.00	0	15	0	15	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	ENSMUSG00000038388.15	Mpp6	chr6	protein_coding	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)
novel_NIR_16254	chr6	50119909	50120699	+	50087434	50120699	A5SS	ENSMUST00000036225.15	novel	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.50	2	2	2	2	y	0.12	1	7	1	7	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	ENSMUSG00000038388.15	Mpp6	chr6	protein_coding	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)
novel_NIR_16255	chr6	50119909	50120699	+	50088107	50120699	A5SS	ENSMUST00000167628.2	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.00	0	2	0	2	n	0.00	0	16	0	16	n	0.00	0	5	0	5	n	0.00	0	15	0	15	n	0.67	2	1	2	1	y	0.20	1	4	1	4	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	ENSMUSG00000038388.15	Mpp6	chr6	protein_coding	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)
novel_NIR_16256	chr6	50122872	50128049	+	50122872	50128919	A3SS	ENSMUST00000171601.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000038388.15	Mpp6	chr6	protein_coding	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)
novel_NIR_16257	chr6	50131522	50135662	+	50129003	50135662	A5SS	ENSMUST00000171601.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	ENSMUSG00000038388.15	Mpp6	chr6	protein_coding	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)
novel_NIR_16258	chr6	50566954	50600796	+	50566954	50571352	3pMXE	ENSMUST00000147260.8	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	ENSMUSG00000085776.9	5430402O13Rik	chr6	lncRNA	RIKEN cDNA 5430402O13 gene
novel_NIR_16259	chr6	5115480	5121001	+	5115480	5116265	3pMXE	ENSMUST00000065842.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000032827.16	Ppp1r9a	chr6	protein_coding	protein phosphatase 1, regulatory subunit 9A
novel_NIR_16260	chr6	5115480	5121001	+	5115480	5134017	A3SS	ENSMUST00000175889.8	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.33	1	2	1	2	n	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.60	3	2	3	2	y	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	ENSMUSG00000032827.16	Ppp1r9a	chr6	protein_coding	protein phosphatase 1, regulatory subunit 9A
novel_NIR_16261	chr6	51438413	51438963	-	51438413	51438900	A5SS	ENSMUST00000203954.3	novel	0.08	11	120	11	120	n	0.07	10	137	10	137	n	0.18	17	78	17	78	y	0.06	6	95	6	95	n	0.10	12	111	12	111	n	0.04	2	45	2	45	n	0.06	10	162	10	162	n	0.12	8	61	8	61	n	0.10	13	113	13	113	n	0.09	18	181	18	181	n	0.13	17	112	17	112	n	0.00	0	149	0	149	n	ENSMUSG00000004980.17	Hnrnpa2b1	chr6	protein_coding	heterogeneous nuclear ribonucleoprotein A2/B1
novel_NIR_16262	chr6	5154207	5154949	+	5154207	5156121	A3SS	ENSMUST00000164110.9	novel	1.00	4	0	4	0	y	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.17	1	5	1	5	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000032827.16	Ppp1r9a	chr6	protein_coding	protein phosphatase 1, regulatory subunit 9A
novel_NIR_16263	chr6	5175823	5177214	-	5175823	5181439	A5SS	ENSMUST00000177159.9	novel	0.06	8	127	8	127	n	0.11	13	107	13	107	n	0.00	0	7	0	7	n	0.11	11	91	11	91	n	0.12	17	126	17	126	n	0.15	2	11	2	11	y	0.11	16	136	16	136	n	0.00	0	35	0	35	n	0.05	6	115	6	115	n	0.08	12	146	12	146	n	0.14	19	116	19	116	n	0.05	6	117	6	117	n	ENSMUSG00000002588.14	Pon1	chr6	protein_coding	paraoxonase 1
novel_NIR_16264	chr6	5254586	5254973	-	5254586	5254969	A5SS	ENSMUST00000176039.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000029759.10	Pon3	chr6	protein_coding	paraoxonase 3
novel_NIR_16265	chr6	5254586	5255611	-	5254586	5254969	5pMXE	ENSMUST00000176039.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000029759.10	Pon3	chr6	protein_coding	paraoxonase 3
novel_NIR_16266	chr6	5254654	5256153	-	5246333	5256153	A3SS	ENSMUST00000125686.8	novel	1.00	1	0	1	0	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.29	2	5	2	5	y	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.17	1	5	1	5	n	0.50	2	2	2	2	y	ENSMUSG00000029759.10	Pon3	chr6	protein_coding	paraoxonase 3
novel_NIR_16267	chr6	54171066	54179749	+	54171066	54172693	3pMXE	ENSMUST00000127323.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000004633.18	Chn2	chr6	protein_coding	chimerin 2
novel_NIR_16268	chr6	54171066	54179749	+	54171066	54195509	A3SS	ENSMUST00000133315.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000004633.18	Chn2	chr6	protein_coding	chimerin 2
novel_NIR_16269	chr6	54406880	54429811	+	54406845	54429811	A5SS	ENSMUST00000132855.8	novel	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.25	2	6	2	6	y	0.00	0	4	0	4	n	0.22	2	7	2	7	y	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.44	7	9	7	9	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000086040.9	Wipf3	chr6	protein_coding	WAS/WASL interacting protein family, member 3
novel_NIR_16270	chr6	54556671	54559820	-	54556671	54562788	A5SS	ENSMUST00000046520.13	novel	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.11	2	16	2	16	n	0.00	0	14	0	14	n	0.11	1	8	1	8	n	0.12	1	7	1	7	n	0.19	3	13	3	13	y	0.00	0	7	0	7	n	0.67	4	2	4	2	y	0.06	1	16	1	16	n	0.00	0	9	0	9	n	0.10	1	9	1	9	n	ENSMUSG00000038074.17	Fkbp14	chr6	protein_coding	FK506 binding protein 14
novel_NIR_16271	chr6	54914422	54915119	-	54914422	54915123	A5SS	ENSMUST00000168172.4	novel	0.00	0	16	0	16	n	0.00	0	14	0	14	n	0.06	2	31	2	31	n	0.00	0	21	0	21	n	0.02	1	45	1	45	n	0.00	0	20	0	20	n	0.10	3	26	3	26	n	0.00	0	13	0	13	n	0.20	4	16	4	16	y	0.00	0	21	0	21	n	0.00	0	18	0	18	n	0.00	0	23	0	23	n	ENSMUSG00000038058.15	Nod1	chr6	protein_coding	nucleotide-binding oligomerization domain containing 1
novel_NIR_16272	chr6	54914422	54915119	-	54914422	54916289	A5SS	ENSMUST00000203076.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038058.15	Nod1	chr6	protein_coding	nucleotide-binding oligomerization domain containing 1
novel_NIR_16273	chr6	5492777	5494770	-	5492777	5494890	A5SS	ENSMUST00000019721.7	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	11	0	11	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.20	2	8	2	8	y	0.00	1	236	1	236	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000019577.7	Pdk4	chr6	protein_coding	pyruvate dehydrogenase kinase, isoenzyme 4
novel_NIR_16274	chr6	55094048	55094399	-	55081794	55094399	A3SS	ENSMUST00000003568.15	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000003476.17	Crhr2	chr6	protein_coding	corticotropin releasing hormone receptor 2
novel_NIR_16275	chr6	56766685	56768553	-	56766685	56773660	A5SS	ENSMUST00000124994.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000059486.12	Kbtbd2	chr6	protein_coding	kelch repeat and BTB (POZ) domain containing 2
novel_NIR_16276	chr6	56766685	56768553	-	56766685	56774148	A5SS	ENSMUST00000151308.2	novel	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000059486.12	Kbtbd2	chr6	protein_coding	kelch repeat and BTB (POZ) domain containing 2
novel_NIR_16277	chr6	56766685	56768553	-	56766685	56774444	A5SS	ENSMUST00000114323.8	novel	0.18	2	9	2	9	y	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.08	1	12	1	12	n	ENSMUSG00000059486.12	Kbtbd2	chr6	protein_coding	kelch repeat and BTB (POZ) domain containing 2
novel_NIR_16278	chr6	56766685	56768553	-	56766685	56774468	A5SS	ENSMUST00000114321.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	ENSMUSG00000059486.12	Kbtbd2	chr6	protein_coding	kelch repeat and BTB (POZ) domain containing 2
novel_NIR_16279	chr6	56874811	56900657	-	56868546	56900657	A3SS	ENSMUST00000205087.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029780.15	Nt5c3	chr6	protein_coding	5'-nucleotidase, cytosolic III
novel_NIR_16280	chr6	56874811	56900657	-	56874814	56900657	A3SS	ENSMUST00000152447.9	novel	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.17	1	5	1	5	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.20	2	8	2	8	y	0.00	0	12	0	12	n	0.00	0	10	0	10	n	ENSMUSG00000029780.15	Nt5c3	chr6	protein_coding	5'-nucleotidase, cytosolic III
novel_NIR_16281	chr6	56874811	56900657	-	56890879	56900657	A3SS&ES	ENSMUST00000135558.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000029780.15	Nt5c3	chr6	protein_coding	5'-nucleotidase, cytosolic III
novel_NIR_16282	chr6	56874811	56900657	-	56900097	56900657	A3SS&ES	ENSMUST00000138647.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000029780.15	Nt5c3	chr6	protein_coding	5'-nucleotidase, cytosolic III
novel_NIR_16283	chr6	56900097	56900416	-	56900097	56900657	A5SS	ENSMUST00000138647.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	ENSMUSG00000029780.15	Nt5c3	chr6	protein_coding	5'-nucleotidase, cytosolic III
novel_NIR_16284	chr6	57495221	57499734	-	57492743	57499734	A3SS	ENSMUST00000042766.6	novel	0.18	7	32	7	32	y	0.00	0	14	0	14	n	0.05	1	21	1	21	n	0.00	0	77	0	77	n	0.00	0	60	0	60	n	0.00	0	13	0	13	n	0.00	0	54	0	54	n	0.00	0	25	0	25	n	0.00	0	34	0	34	n	0.00	0	58	0	58	n	0.00	0	28	0	28	n	0.00	0	69	0	69	n	ENSMUSG00000037826.6	Ppm1k	chr6	protein_coding	protein phosphatase 1K (PP2C domain containing)
novel_NIR_16285	chr6	57502239	57511402	-	57502239	57512265	A5SS	ENSMUST00000042766.6	novel	0.00	0	36	0	36	n	0.35	6	11	6	11	y	0.08	2	23	2	23	n	0.01	1	77	1	77	n	0.08	5	56	5	56	n	0.00	0	19	0	19	n	0.00	0	40	0	40	n	0.06	2	32	2	32	n	0.00	0	40	0	40	n	0.04	3	74	3	74	n	0.03	1	33	1	33	n	0.01	1	68	1	68	n	ENSMUSG00000037826.6	Ppm1k	chr6	protein_coding	protein phosphatase 1K (PP2C domain containing)
novel_NIR_16286	chr6	57680476	57689973	+	57680248	57689973	A5SS	ENSMUST00000072954.8	novel	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.17	3	15	3	15	y	0.00	0	14	0	14	n	0.14	1	6	1	6	n	0.10	1	9	1	9	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	ENSMUSG00000062190.13	Lancl2	chr6	protein_coding	LanC (bacterial lantibiotic synthetase component C)-like 2
novel_NIR_16287	chr6	58627170	58632623	+	58562045	58632623	A5SS	ENSMUST00000147213.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000029802.14	Abcg2	chr6	protein_coding	ATP binding cassette subfamily G member 2 (Junior blood group)
novel_NIR_16288	chr6	58627170	58632623	+	58574093	58632623	A5SS	ENSMUST00000148008.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	2	0	2	n	ENSMUSG00000029802.14	Abcg2	chr6	protein_coding	ATP binding cassette subfamily G member 2 (Junior blood group)
novel_NIR_16289	chr6	58641543	58643867	+	58641543	58666540	A3SS	ENSMUST00000203146.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029802.14	Abcg2	chr6	protein_coding	ATP binding cassette subfamily G member 2 (Junior blood group)
novel_NIR_16290	chr6	58846733	58847139	+	58845751	58847139	A5SS	ENSMUST00000031823.12	novel	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.18	2	9	2	9	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.14	1	6	1	6	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	ENSMUSG00000029804.18	Herc3	chr6	protein_coding	hect domain and RLD 3
novel_NIR_16291	chr6	58851385	58852486	+	58851385	58851852	3pMXE	ENSMUST00000204196.2	novel	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029804.18	Herc3	chr6	protein_coding	hect domain and RLD 3
novel_NIR_16292	chr6	58851385	58852486	+	58851385	58853474	A3SS	ENSMUST00000031823.12	novel	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000029804.18	Herc3	chr6	protein_coding	hect domain and RLD 3
novel_NIR_16293	chr6	58851935	58853474	+	58851385	58853474	A5SS	ENSMUST00000031823.12	novel	0.38	3	5	3	5	y	0.40	2	3	2	3	y	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.08	1	11	1	11	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000029804.18	Herc3	chr6	protein_coding	hect domain and RLD 3
novel_NIR_16294	chr6	58852617	58853474	+	58851385	58853474	A5SS	ENSMUST00000031823.12	novel	0.00	0	5	0	5	n	0.40	2	3	2	3	y	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.08	1	11	1	11	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	ENSMUSG00000029804.18	Herc3	chr6	protein_coding	hect domain and RLD 3
novel_NIR_16295	chr6	58853637	58861935	+	58853637;58853866	58853753;58861935	ES	ENSMUST00000031823.12	novel	0.00	0	3.0	0	4;2	n	0.00	0	4.0	0	7;1	n	0.00	0	2.5	0	3;2	n	0.00	0	5.5	0	6;5	n	0.00	0	5.0	0	6;4	n	0.00	0	2.5	0	2;3	n	0.00	0	10.5	0	13;8	n	0.00	0	3.5	0	7;0	n	0.40	3	4.5	3	6;3	y	0.00	0	9.0	0	11;7	n	0.00	0	3.5	0	4;3	n	0.00	0	3.5	0	1;6	n	ENSMUSG00000029804.18	Herc3	chr6	protein_coding	hect domain and RLD 3
novel_NIR_16296	chr6	58871609	58884493	+	58871609	58879105	3pMXE	ENSMUST00000204629.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029804.18	Herc3	chr6	protein_coding	hect domain and RLD 3
novel_NIR_16297	chr6	58871609	58884493	+	58871609	58880229	3pMXE	ENSMUST00000031823.12	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000029804.18	Herc3	chr6	protein_coding	hect domain and RLD 3
novel_NIR_16298	chr6	58980484	59001297	-	58980491	59001297	A3SS	ENSMUST00000089860.12	novel	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.06	1	16	1	16	n	0.00	0	3	0	3	n	0.00	0	15	0	15	n	0.00	0	8	0	8	n	0.00	0	25	0	25	n	0.04	1	22	1	22	n	0.00	0	20	0	20	n	0.21	6	23	6	23	y	ENSMUSG00000037709.14	Fam13a	chr6	protein_coding	family with sequence similarity 13, member A
novel_NIR_16299	chr6	58980484	59001297	-	58991606	59001297	A3SS&ES	ENSMUST00000173712.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	6	0	6	0	y	ENSMUSG00000037709.14	Fam13a	chr6	protein_coding	family with sequence similarity 13, member A
novel_NIR_16300	chr6	6110021	6113938	-	6110024	6113938	A3SS	ENSMUST00000015256.15	novel	0.74	161	57	161	57	y	0.86	109	18	109	18	y	0.66	87	45	87	45	y	0.78	268	77	268	77	y	0.78	252	70	252	70	y	0.76	61	19	61	19	y	0.77	236	72	236	72	y	0.78	96	27	96	27	y	0.73	170	64	170	64	y	0.84	326	60	326	60	y	0.81	189	45	189	45	y	0.78	259	75	259	75	y	ENSMUSG00000015112.16	Slc25a13	chr6	protein_coding	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13
novel_NIR_16301	chr6	6145287	6152408	-	6117245	6152408	A3SS	ENSMUST00000203990.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000015112.16	Slc25a13	chr6	protein_coding	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13
novel_NIR_16302	chr6	6152523	6191264	-	6152523	6173872	5pMXE	ENSMUST00000203990.3	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000015112.16	Slc25a13	chr6	protein_coding	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13
novel_NIR_16303	chr6	65020429	65020816	+	65020429	65020820	A3SS	ENSMUST00000205118.3	novel	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.23	3	10	3	10	y	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.07	1	14	1	14	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.10	1	9	1	9	n	0.00	0	6	0	6	n	ENSMUSG00000029920.10	Smarcad1	chr6	protein_coding	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
novel_NIR_16304	chr6	65020429	65020816	+	65020429	65027027	A3SS	ENSMUST00000204114.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000029920.10	Smarcad1	chr6	protein_coding	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
novel_NIR_16305	chr6	65044122	65044266	+	65044122	65048969	A3SS	ENSMUST00000031984.9	novel	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	19	0	19	n	0.00	0	5	0	5	n	0.33	4	8	4	8	y	0.00	0	5	0	5	n	0.14	1	6	1	6	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.05	1	18	1	18	n	ENSMUSG00000029920.10	Smarcad1	chr6	protein_coding	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
novel_NIR_16306	chr6	65060987	65062712	+	65060987	65067080	A3SS	ENSMUST00000031984.9	novel	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	20	0	20	n	0.00	0	19	0	19	n	0.11	2	17	2	17	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	15	0	15	n	0.08	1	12	1	12	n	0.00	0	14	0	14	n	0.15	2	11	2	11	y	0.00	0	23	0	23	n	ENSMUSG00000029920.10	Smarcad1	chr6	protein_coding	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
novel_NIR_16307	chr6	67012756	67013364	-	67012756	67013994	A5SS	ENSMUST00000204282.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036390.9	Gadd45a	chr6	protein_coding	growth arrest and DNA-damage-inducible 45 alpha
novel_NIR_16308	chr6	67020902	67041597	+	67020902	67040379	A3SS	ENSMUST00000149889.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000087231.8	E230016M11Rik	chr6	lncRNA	RIKEN cDNA E230016M11 gene
novel_NIR_16309	chr6	67020902	67041597	+	67040518	67041597	A5SS&ES	ENSMUST00000130657.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.67	2	1	2	1	y	ENSMUSG00000087231.8	E230016M11Rik	chr6	lncRNA	RIKEN cDNA E230016M11 gene
novel_NIR_16310	chr6	67040570	67041597	+	67040518	67041597	A5SS	ENSMUST00000130657.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000087231.8	E230016M11Rik	chr6	lncRNA	RIKEN cDNA E230016M11 gene
novel_NIR_16311	chr6	67053654	67054232	+	67043932	67054232	A5SS	ENSMUST00000130657.8	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	9	0	9	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	ENSMUSG00000087231.8	E230016M11Rik	chr6	lncRNA	RIKEN cDNA E230016M11 gene
novel_NIR_16312	chr6	67244167	67248182	+	67224474	67248182	A5SS	ENSMUST00000204810.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	ENSMUSG00000036371.7	Serbp1	chr6	protein_coding	serpine1 mRNA binding protein 1
novel_NIR_16313	chr6	67248332	67249141	+	67248304	67249141	A5SS	ENSMUST00000205091.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000036371.7	Serbp1	chr6	protein_coding	serpine1 mRNA binding protein 1
novel_NIR_16314	chr6	6957115	6965021	+	6957137	6965021	A5SS	ENSMUST00000123848.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000042505.7	Sdhaf3	chr6	protein_coding	succinate dehydrogenase complex assembly factor 3
novel_NIR_16315	chr6	6957137	7038854	+	6957137	6965021	3pMXE	ENSMUST00000123848.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000042505.7	Sdhaf3	chr6	protein_coding	succinate dehydrogenase complex assembly factor 3
novel_NIR_16316	chr6	71118438	71121007	-	71118438	71118669	A5SS&ES	ENSMUST00000074241.9	novel	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.10	1	9	1	9	n	0.25	2	6	2	6	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.40	2	3	2	3	y	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.15	2	11	2	11	y	ENSMUSG00000054474.16	Thnsl2	chr6	protein_coding	threonine synthase-like 2 (bacterial)
novel_NIR_16317	chr6	71118736	71121007	-	71118736	71121275	A5SS	ENSMUST00000074241.9	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.23	3	10	3	10	y	0.00	0	5	0	5	n	ENSMUSG00000054474.16	Thnsl2	chr6	protein_coding	threonine synthase-like 2 (bacterial)
novel_NIR_16318	chr6	71141829	71142670	+	71141829	71142695	A3SS	ENSMUST00000204123.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	ENSMUSG00000108206.2	Gm44427	chr6	lncRNA	predicted gene, 44427
novel_NIR_16319	chr6	71248824	71259192	+	71248824	71260948	A3SS	ENSMUST00000205123.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000053012.18	Krcc1	chr6	protein_coding	lysine-rich coiled-coil 1
novel_NIR_16320	chr6	71368961	71369873	-	71368961	71370087	A5SS	ENSMUST00000149415.2	novel	0.00	0	18	0	18	n	0.00	0	19	0	19	n	0.00	0	20	0	20	n	0.00	0	24	0	24	n	0.00	0	42	0	42	n	0.00	0	26	0	26	n	0.00	0	37	0	37	n	0.00	0	16	0	16	n	0.00	0	20	0	20	n	0.15	6	34	6	34	y	0.00	0	26	0	26	n	0.00	0	48	0	48	n	ENSMUSG00000002222.15	Rmnd5a	chr6	protein_coding	required for meiotic nuclear division 5 homolog A
novel_NIR_16321	chr6	71482833	71484965	+	71482833	71485670	A3SS	ENSMUST00000114178.8	novel	0.71	5	2	5	2	y	0.25	1	3	1	3	n	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	7	0	7	0	y	0.33	1	2	1	2	n	1.00	5	0	5	0	y	1.00	3	0	3	0	y	0.57	4	3	4	3	y	0.43	3	4	3	4	y	1.00	5	0	5	0	y	0.50	4	4	4	4	y	ENSMUSG00000052656.13	Rnf103	chr6	protein_coding	ring finger protein 103
novel_NIR_16322	chr6	71482833	71485838	+	71482833	71485670	A3SS	ENSMUST00000114178.8	novel	0.00	0	2	0	2	n	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000052656.13	Rnf103	chr6	protein_coding	ring finger protein 103
novel_NIR_16323	chr6	71482833	71500857	+	71482833	71485670	3pMXE	ENSMUST00000114178.8	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.33	2	4	2	4	y	ENSMUSG00000052656.13	Rnf103	chr6	protein_coding	ring finger protein 103
novel_NIR_16324	chr6	71521017	71523471	+	71521017	71537881	A3SS	ENSMUST00000204535.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.50	2	2	2	2	y	ENSMUSG00000053119.12	Chmp3	chr6	protein_coding	charged multivesicular body protein 3
novel_NIR_16325	chr6	71521376	71529383	+	71520951	71529383	A5SS	ENSMUST00000127774.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	ENSMUSG00000053119.12	Chmp3	chr6	protein_coding	charged multivesicular body protein 3
novel_NIR_16326	chr6	71521376	71529383	+	71521429	71529383	A5SS	ENSMUST00000142169.2	novel	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.18	3	14	3	14	y	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	ENSMUSG00000053119.12	Chmp3	chr6	protein_coding	charged multivesicular body protein 3
novel_NIR_16327	chr6	71529443	71537896	+	71529443	71535959	A3SS&ES	ENSMUST00000127774.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.44	4	5	4	5	y	0.80	8	2	8	2	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000053119.12	Chmp3	chr6	protein_coding	charged multivesicular body protein 3
novel_NIR_16328	chr6	71529443	71537896	+	71529443	71535998	A3SS&ES	ENSMUST00000132917.8	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.80	4	1	4	1	y	0.89	8	1	8	1	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000053119.12	Chmp3	chr6	protein_coding	charged multivesicular body protein 3
novel_NIR_16329	chr6	71529443	71537896	+	71529443	71551099	A3SS	ENSMUST00000204199.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.57	4	3	4	3	n	0.89	8	1	8	1	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000053119.12	Chmp3	chr6	protein_coding	charged multivesicular body protein 3
novel_NIR_16330	chr6	71529443	71537923	+	71529443	71535959	A3SS&ES	ENSMUST00000127774.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.46	6	7	6	7	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000053119.12	Chmp3	chr6	protein_coding	charged multivesicular body protein 3
novel_NIR_16331	chr6	71529443	71537923	+	71529443	71535998	A3SS&ES	ENSMUST00000132917.8	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.75	6	2	6	2	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000053119.12	Chmp3	chr6	protein_coding	charged multivesicular body protein 3
novel_NIR_16332	chr6	71529443	71537923	+	71529443	71551099	A3SS	ENSMUST00000204199.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.60	6	4	6	4	y	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000053119.12	Chmp3	chr6	protein_coding	charged multivesicular body protein 3
novel_NIR_16333	chr6	71577854	71580918	-	71580409	71580918	3pMXE	ENSMUST00000206050.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000053470.14	Kdm3a	chr6	protein_coding	lysine (K)-specific demethylase 3A
novel_NIR_16334	chr6	71584590	71588843	-	71584590	71585989	5pMXE	ENSMUST00000205470.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000053470.14	Kdm3a	chr6	protein_coding	lysine (K)-specific demethylase 3A
novel_NIR_16335	chr6	71584590	71588843	-	71584590	71588883	A5SS	ENSMUST00000206916.2	novel	0.33	1	2	1	2	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.50	3	3	3	3	y	ENSMUSG00000053470.14	Kdm3a	chr6	protein_coding	lysine (K)-specific demethylase 3A
novel_NIR_16336	chr6	71590979	71591375	-	71590979	71593802	A5SS	ENSMUST00000206597.2	novel	0.67	4	2	4	2	y	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.33	1	2	1	2	n	1.00	2	0	2	0	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.33	1	2	1	2	n	ENSMUSG00000053470.14	Kdm3a	chr6	protein_coding	lysine (K)-specific demethylase 3A
novel_NIR_16337	chr6	71590979	71591375	-	71590979	71596942	A5SS	ENSMUST00000065509.11	novel	0.44	4	5	4	5	y	0.00	0	4	0	4	n	0.00	0	33	0	33	n	0.00	0	8	0	8	n	0.00	0	15	0	15	n	0.00	0	3	0	3	n	0.08	1	11	1	11	n	0.12	1	7	1	7	n	0.18	2	9	2	9	y	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.07	1	14	1	14	n	ENSMUSG00000053470.14	Kdm3a	chr6	protein_coding	lysine (K)-specific demethylase 3A
novel_NIR_16338	chr6	71828864	71829780	+	71828864	71829750	A3SS	ENSMUST00000171057.2	novel	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	24	0	24	n	0.00	0	26	0	26	n	0.00	0	25	0	25	n	0.12	2	14	2	14	n	0.16	3	16	3	16	y	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.00	0	30	0	30	n	0.00	0	15	0	15	n	0.10	2	18	2	18	n	ENSMUSG00000052337.16	Immt	chr6	protein_coding	inner membrane protein, mitochondrial
novel_NIR_16339	chr6	71828864	71829780	+	71828864	71833896	A3SS	ENSMUST00000166975.8	novel	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.67	2	1	2	1	y	0.06	3	46	3	46	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.25	2	6	2	6	y	ENSMUSG00000052337.16	Immt	chr6	protein_coding	inner membrane protein, mitochondrial
novel_NIR_16340	chr6	71871997	71872889	-	71871356	71872889	A3SS	ENSMUST00000205556.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000063884.7	Ptcd3	chr6	protein_coding	pentatricopeptide repeat domain 3
novel_NIR_16341	chr6	71871997	71872889	-	71872677	71872889	A3SS&ES	ENSMUST00000206879.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000063884.7	Ptcd3	chr6	protein_coding	pentatricopeptide repeat domain 3
novel_NIR_16342	chr6	71908812	71913280	+	71913112	71913280	5pMXE	ENSMUST00000205942.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000049553.12	Polr1a	chr6	protein_coding	polymerase (RNA) I polypeptide A
novel_NIR_16343	chr6	71955817	71961331	+	71957251	71961331	A5SS	ENSMUST00000205517.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000049553.12	Polr1a	chr6	protein_coding	polymerase (RNA) I polypeptide A
novel_NIR_16344	chr6	72075961	72105248	+	72074978	72105248	A5SS	ENSMUST00000114112.4	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.20	1	4	1	4	n	0.09	1	10	1	10	n	0.50	2	2	2	2	y	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000056091.13	St3gal5	chr6	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 5
novel_NIR_16345	chr6	72092942	72105248	+	72074978	72105248	A5SS	ENSMUST00000114112.4	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.25	2	6	2	6	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000056091.13	St3gal5	chr6	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 5
novel_NIR_16346	chr6	72105371	72119124	+	72074978	72119124	A5SS	ENSMUST00000187007.3	novel	1.00	5	0	5	0	y	1.00	4	0	4	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	ENSMUSG00000056091.13	St3gal5	chr6	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 5
novel_NIR_16347	chr6	72204242	72205540	-	72204242	72211378	A5SS	ENSMUST00000206425.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000037621.9	Atoh8	chr6	protein_coding	atonal bHLH transcription factor 8
novel_NIR_16348	chr6	72319951	72321875	-	72319951	72321868	A5SS	ENSMUST00000070345.5	novel	0.06	1	15	1	15	n	0.00	0	13	0	13	n	0.00	0	37	0	37	n	0.10	2	19	2	19	n	0.12	7	52	7	52	n	0.00	0	10	0	10	n	0.07	2	27	2	27	n	0.05	1	19	1	19	n	0.05	1	19	1	19	n	0.08	3	33	3	33	n	0.15	3	17	3	17	y	0.04	1	24	1	24	n	ENSMUSG00000056305.5	Usp39	chr6	protein_coding	ubiquitin specific peptidase 39
novel_NIR_16349	chr6	72332527	72332809	+	72332527	72333124	A3SS	ENSMUST00000206064.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000055912.9	Tmem150a	chr6	protein_coding	transmembrane protein 150A
novel_NIR_16350	chr6	72332527	72332840	+	72332527	72333124	A3SS	ENSMUST00000206064.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	1	0	1	0	n	ENSMUSG00000055912.9	Tmem150a	chr6	protein_coding	transmembrane protein 150A
novel_NIR_16351	chr6	72332527	72332866	+	72332527	72333124	A3SS	ENSMUST00000206064.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000055912.9	Tmem150a	chr6	protein_coding	transmembrane protein 150A
novel_NIR_16352	chr6	72333864	72334033	+	72333151	72334033	A5SS	ENSMUST00000206821.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000055912.9	Tmem150a	chr6	protein_coding	transmembrane protein 150A
novel_NIR_16353	chr6	72333864	72334033	+	72333295	72334033	A5SS	ENSMUST00000206531.2	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000055912.9	Tmem150a	chr6	protein_coding	transmembrane protein 150A
novel_NIR_16354	chr6	72334119	72334936	+	72334119	72335291	A3SS	ENSMUST00000132243.3	novel	1.00	8	0	8	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	14	0	14	0	y	1.00	4	0	4	0	y	1.00	5	0	5	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	15	0	15	0	y	1.00	7	0	7	0	y	1.00	5	0	5	0	y	ENSMUSG00000055912.9	Tmem150a	chr6	protein_coding	transmembrane protein 150A
novel_NIR_16355	chr6	72335418	72335577	+	72335418	72335989	A3SS	ENSMUST00000206821.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000055912.9	Tmem150a	chr6	protein_coding	transmembrane protein 150A
novel_NIR_16356	chr6	72337996	72338100	-	72337996	72338105	A5SS	ENSMUST00000114095.2	novel	0.10	1	9	1	9	n	0.22	2	7	2	7	y	0.08	1	11	1	11	n	0.62	5	3	5	3	y	0.00	0	6	0	6	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	-	-	-	-	-	-	ENSMUSG00000055850.13	Rnf181	chr6	protein_coding	ring finger protein 181
novel_NIR_16357	chr6	72338353	72339224	-	72338209	72339224	A3SS	ENSMUST00000151063.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	2	4	2	4	y	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000055850.13	Rnf181	chr6	protein_coding	ring finger protein 181
novel_NIR_16358	chr6	72338353	72339224	-	72338353	72339259	A5SS	ENSMUST00000125554.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000055850.13	Rnf181	chr6	protein_coding	ring finger protein 181
novel_NIR_16359	chr6	72346189	72346273	-	72346162	72346273	A3SS	ENSMUST00000074231.6	novel	0.05	1	19	1	19	n	0.09	1	10	1	10	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.12	2	15	2	15	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.50	4	4	4	4	y	0.25	2	6	2	6	y	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	29	0	29	n	ENSMUSG00000073002.10	Vamp5	chr6	protein_coding	vesicle-associated membrane protein 5
novel_NIR_16360	chr6	72573449	72575210	-	72573449	72574607	A5SS&ES	ENSMUST00000152705.3	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.40	2	3	2	3	y	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	ENSMUSG00000056698.12	Elmod3	chr6	protein_coding	ELMO/CED-12 domain containing 3
novel_NIR_16361	chr6	72573449	72575210	-	72573449	72575305	A5SS	ENSMUST00000114069.8	novel	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	26	0	26	n	0.20	2	8	2	8	y	0.00	0	25	0	25	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.18	2	9	2	9	y	0.00	0	5	0	5	n	0.00	0	7	0	7	n	ENSMUSG00000056698.12	Elmod3	chr6	protein_coding	ELMO/CED-12 domain containing 3
novel_NIR_16362	chr6	72575779	72577965	+	72575779	72578459	A3SS	ENSMUST00000176364.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	13	0	13	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000056666.14	Retsat	chr6	protein_coding	retinol saturase (all trans retinol 13,14 reductase)
novel_NIR_16363	chr6	72575779	72577965	+	72575779	72580637	A3SS	ENSMUST00000176168.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	13	0	13	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000056666.14	Retsat	chr6	protein_coding	retinol saturase (all trans retinol 13,14 reductase)
novel_NIR_16364	chr6	72579797	72580637	+	72575779	72580637	A5SS	ENSMUST00000176168.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	20	0	20	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000056666.14	Retsat	chr6	protein_coding	retinol saturase (all trans retinol 13,14 reductase)
novel_NIR_16365	chr6	72593602	72606814	+	72606335	72606814	5pMXE	ENSMUST00000156497.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000072999.10	Gm15401	chr6	lncRNA	predicted gene 15401
novel_NIR_16366	chr6	72608240	72609822	+	72608240	72609633	A3SS	ENSMUST00000081929.4	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000072999.10	Gm15401	chr6	lncRNA	predicted gene 15401
novel_NIR_16367	chr6	72613522	72621680	+	72613522	72614062	3pMXE	ENSMUST00000081929.4	novel	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.20	2	8	2	8	y	0.00	0	10	0	10	n	0.11	1	8	1	8	n	0.29	2	5	2	5	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	ENSMUSG00000072999.10	Gm15401	chr6	lncRNA	predicted gene 15401
novel_NIR_16368	chr6	72624135	72625784	-	72611215	72625784	A3SS	ENSMUST00000114053.9	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.22	2	7	2	7	y	0.00	0	3	0	3	n	ENSMUSG00000055799.14	Tcf7l1	chr6	protein_coding	transcription factor 7 like 1 (T cell specific, HMG box)
novel_NIR_16369	chr6	72625183	72625784	-	72611215	72625784	A3SS	ENSMUST00000114053.9	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.20	1	4	1	4	n	0.12	1	7	1	7	n	0.00	0	3	0	3	n	ENSMUSG00000055799.14	Tcf7l1	chr6	protein_coding	transcription factor 7 like 1 (T cell specific, HMG box)
novel_NIR_16370	chr6	72820113	72822411	-	72820113	72835757	A5SS	ENSMUST00000206378.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000055239.11	Kcmf1	chr6	protein_coding	potassium channel modulatory factor 1
novel_NIR_16371	chr6	72838577	72838741	-	72827467	72838741	A3SS	ENSMUST00000204708.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.80	4	1	4	1	y	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000055239.11	Kcmf1	chr6	protein_coding	potassium channel modulatory factor 1
novel_NIR_16372	chr6	72838908	72854126	-	72838908	72875963	A5SS	ENSMUST00000204598.3	novel	0.15	2	11	2	11	y	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.20	1	4	1	4	n	0.08	1	12	1	12	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	ENSMUSG00000055239.11	Kcmf1	chr6	protein_coding	potassium channel modulatory factor 1
novel_NIR_16373	chr6	72838908	72871475	-	72838908	72875963	A5SS	ENSMUST00000204598.3	novel	0.15	2	11	2	11	y	0.08	1	11	1	11	n	0.08	1	12	1	12	n	0.00	0	7	0	7	n	0.08	1	11	1	11	n	0.00	0	5	0	5	n	0.14	1	6	1	6	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.12	2	14	2	14	n	ENSMUSG00000055239.11	Kcmf1	chr6	protein_coding	potassium channel modulatory factor 1
novel_NIR_16374	chr6	73225736	73229260	+	73225736	73231943	A3SS	ENSMUST00000123159.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000052738.15	Suclg1	chr6	protein_coding	succinate-CoA ligase, GDP-forming, alpha subunit
novel_NIR_16375	chr6	73225736	73233162	+	73225736	73231943	A3SS&ES	ENSMUST00000123159.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000052738.15	Suclg1	chr6	protein_coding	succinate-CoA ligase, GDP-forming, alpha subunit
novel_NIR_16376	chr6	73226366	73233154	+	73232032	73233154	A5SS&ES	ENSMUST00000123159.8	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000052738.15	Suclg1	chr6	protein_coding	succinate-CoA ligase, GDP-forming, alpha subunit
novel_NIR_16377	chr6	73229530	73233154	+	73232032	73233154	A5SS&ES	ENSMUST00000123159.8	novel	0.75	3	1	3	1	y	1.00	2	0	2	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000052738.15	Suclg1	chr6	protein_coding	succinate-CoA ligase, GDP-forming, alpha subunit
novel_NIR_16378	chr6	7689523	7690935	-	7689523	7692152	A5SS	ENSMUST00000139596.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	9	0	9	0	y	ENSMUSG00000029752.13	Asns	chr6	protein_coding	asparagine synthetase
novel_NIR_16379	chr6	7689523	7690935	-	7689523	7692711	A5SS	ENSMUST00000115542.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	9	0	9	0	y	ENSMUSG00000029752.13	Asns	chr6	protein_coding	asparagine synthetase
novel_NIR_16380	chr6	7689523	7690935	-	7689523	7692847	A5SS	ENSMUST00000148349.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	9	0	9	0	y	ENSMUSG00000029752.13	Asns	chr6	protein_coding	asparagine synthetase
novel_NIR_16381	chr6	7689523	7690935	-	7689523	7692897	A5SS	ENSMUST00000126303.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	9	0	9	0	y	ENSMUSG00000029752.13	Asns	chr6	protein_coding	asparagine synthetase
novel_NIR_16382	chr6	7689523	7690935	-	7689523	7693109	A5SS	ENSMUST00000031766.12	novel	0.06	1	15	1	15	n	0.00	0	7	0	7	n	0.03	3	109	3	109	n	0.30	3	7	3	7	y	0.04	2	51	2	51	n	0.02	1	50	1	50	n	0.00	0	19	0	19	n	0.00	0	38	0	38	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.32	9	19	9	19	y	ENSMUSG00000029752.13	Asns	chr6	protein_coding	asparagine synthetase
novel_NIR_16383	chr6	81910784;81912743	81912600;81912887	+	81910784	81912887	cassetteExon	ENSMUST00000152996.8	novel	1.00	0.5	0	1;0	0	n	-	-	-	-	-	-	1.00	3.5	0	2;5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	0.5	0	0;1	0	n	ENSMUSG00000035125.11	Gcfc2	chr6	protein_coding	GC-rich sequence DNA binding factor 2
novel_NIR_16384	chr6	81912743	81912887	+	81909892	81912887	A5SS	ENSMUST00000043195.11	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.45	5	6	5	6	y	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.50	1	1	1	1	n	ENSMUSG00000035125.11	Gcfc2	chr6	protein_coding	GC-rich sequence DNA binding factor 2
novel_NIR_16385	chr6	81920522	81921391	+	81920522	81921302	A3SS	ENSMUST00000043195.11	novel	0.50	2	2	2	2	y	0.00	0	6	0	6	n	0.14	1	6	1	6	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.11	1	8	1	8	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	ENSMUSG00000035125.11	Gcfc2	chr6	protein_coding	GC-rich sequence DNA binding factor 2
novel_NIR_16386	chr6	81920522	81921391	+	81920522	81921388	A3SS	ENSMUST00000152996.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.14	1	6	1	6	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035125.11	Gcfc2	chr6	protein_coding	GC-rich sequence DNA binding factor 2
novel_NIR_16387	chr6	82021489	82043674	+	82021489	82023659	3pMXE	ENSMUST00000150691.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000035104.15	Eva1a	chr6	protein_coding	eva-1 homolog A (C. elegans)
novel_NIR_16388	chr6	82027525	82048036	+	82018248	82048036	A5SS	ENSMUST00000150976.8	novel	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035104.15	Eva1a	chr6	protein_coding	eva-1 homolog A (C. elegans)
novel_NIR_16389	chr6	82027525	82048036	+	82029427	82048036	5pMXE	ENSMUST00000149023.2	novel	0.25	1	3	1	3	n	0.36	4	7	4	7	y	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	ENSMUSG00000035104.15	Eva1a	chr6	protein_coding	eva-1 homolog A (C. elegans)
novel_NIR_16390	chr6	82029287	82048036	+	82018248	82048036	A5SS	ENSMUST00000150976.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035104.15	Eva1a	chr6	protein_coding	eva-1 homolog A (C. elegans)
novel_NIR_16391	chr6	82047744	82048036	+	82018248	82048036	A5SS	ENSMUST00000150976.8	novel	1.00	10	0	10	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	8	0	8	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035104.15	Eva1a	chr6	protein_coding	eva-1 homolog A (C. elegans)
novel_NIR_16392	chr6	82047744	82048036	+	82029427	82048036	A5SS	ENSMUST00000149023.2	novel	0.77	10	3	10	3	y	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.67	8	4	8	4	y	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	ENSMUSG00000035104.15	Eva1a	chr6	protein_coding	eva-1 homolog A (C. elegans)
novel_NIR_16393	chr6	82047758	82048036	+	82018248	82048036	A5SS	ENSMUST00000150976.8	novel	1.00	9	0	9	0	y	1.00	8	0	8	0	y	1.00	16	0	16	0	y	1.00	6	0	6	0	y	1.00	12	0	12	0	y	1.00	15	0	15	0	y	1.00	17	0	17	0	y	1.00	9	0	9	0	y	1.00	7	0	7	0	y	1.00	12	0	12	0	y	1.00	14	0	14	0	y	1.00	8	0	8	0	y	ENSMUSG00000035104.15	Eva1a	chr6	protein_coding	eva-1 homolog A (C. elegans)
novel_NIR_16394	chr6	82047758	82048036	+	82018882	82048036	A5SS	ENSMUST00000042974.15	novel	0.08	9	103	9	103	n	0.07	8	106	8	106	n	0.16	16	84	16	84	y	0.05	6	117	6	117	n	0.09	12	124	12	124	n	0.48	15	16	15	16	y	0.11	17	141	17	141	n	0.16	9	46	9	46	y	0.08	7	76	7	76	n	0.06	12	195	12	195	n	0.13	14	97	14	97	n	0.05	8	138	8	138	n	ENSMUSG00000035104.15	Eva1a	chr6	protein_coding	eva-1 homolog A (C. elegans)
novel_NIR_16395	chr6	82047758	82048036	+	82029427	82048036	A5SS	ENSMUST00000149023.2	novel	0.75	9	3	9	3	y	0.53	8	7	8	7	y	0.70	16	7	16	7	y	0.38	6	10	6	10	y	0.43	12	16	12	16	y	0.48	15	16	15	16	y	0.65	17	9	17	9	y	0.53	9	8	9	8	y	0.64	7	4	7	4	y	0.52	12	11	12	11	y	0.67	14	7	14	7	y	0.53	8	7	8	7	y	ENSMUSG00000035104.15	Eva1a	chr6	protein_coding	eva-1 homolog A (C. elegans)
novel_NIR_16396	chr6	82047785	82048036	+	82018248	82048036	A5SS	ENSMUST00000150976.8	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	10	0	10	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000035104.15	Eva1a	chr6	protein_coding	eva-1 homolog A (C. elegans)
novel_NIR_16397	chr6	82047785	82048036	+	82029427	82048036	A5SS	ENSMUST00000149023.2	novel	0.50	3	3	3	3	y	0.00	0	7	0	7	n	0.22	2	7	2	7	y	0.00	0	10	0	10	n	0.38	10	16	10	16	y	0.00	0	16	0	16	n	0.40	6	9	6	9	y	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.22	2	7	2	7	y	0.00	0	7	0	7	n	ENSMUSG00000035104.15	Eva1a	chr6	protein_coding	eva-1 homolog A (C. elegans)
novel_NIR_16398	chr6	82047848	82048036	+	82018248	82048036	A5SS	ENSMUST00000150976.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035104.15	Eva1a	chr6	protein_coding	eva-1 homolog A (C. elegans)
novel_NIR_16399	chr6	82047848	82048036	+	82029427	82048036	A5SS	ENSMUST00000149023.2	novel	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.24	5	16	5	16	y	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.11	1	8	1	8	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	ENSMUSG00000035104.15	Eva1a	chr6	protein_coding	eva-1 homolog A (C. elegans)
novel_NIR_16400	chr6	82047878	82048036	+	82018248	82048036	A5SS	ENSMUST00000150976.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035104.15	Eva1a	chr6	protein_coding	eva-1 homolog A (C. elegans)
novel_NIR_16401	chr6	82047878	82048036	+	82029427	82048036	A5SS	ENSMUST00000149023.2	novel	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.06	1	16	1	16	n	0.00	0	9	0	9	n	0.20	2	8	2	8	y	0.50	4	4	4	4	y	0.08	1	11	1	11	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	ENSMUSG00000035104.15	Eva1a	chr6	protein_coding	eva-1 homolog A (C. elegans)
novel_NIR_16402	chr6	82624884	82628418	-	82599106	82628418	A3SS	ENSMUST00000160281.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030042.16	Pole4	chr6	protein_coding	polymerase (DNA-directed), epsilon 4 (p12 subunit)
novel_NIR_16403	chr6	82624888	82628418	-	82599106	82628418	A3SS	ENSMUST00000160281.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030042.16	Pole4	chr6	protein_coding	polymerase (DNA-directed), epsilon 4 (p12 subunit)
novel_NIR_16404	chr6	8274658	8279277	+	8270581	8279277	A5SS	ENSMUST00000161400.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000089862.9	Umad1	chr6	protein_coding	UMAP1-MVP12 associated (UMA) domain containing 1
novel_NIR_16405	chr6	83032029	83032159	+	83032029	83032487	A3SS	ENSMUST00000204343.3	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	12	0	12	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000068328.10	Aup1	chr6	protein_coding	ancient ubiquitous protein 1
novel_NIR_16406	chr6	83032191	83032487	+	83032029	83032487	A5SS	ENSMUST00000204343.3	novel	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	ENSMUSG00000068328.10	Aup1	chr6	protein_coding	ancient ubiquitous protein 1
novel_NIR_16407	chr6	83034074	83034265	+	83034074	83034195	A3SS	ENSMUST00000203915.3	novel	0.00	0	20	0	20	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.45	5	6	5	6	y	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.35	7	13	7	13	y	0.00	0	13	0	13	n	0.00	0	13	0	13	n	ENSMUSG00000068328.10	Aup1	chr6	protein_coding	ancient ubiquitous protein 1
novel_NIR_16408	chr6	83035120	83035213	+	83035120	83035411	A3SS	ENSMUST00000077502.5	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000009145.7	Dqx1	chr6	protein_coding	DEAQ RNA-dependent ATPase
novel_NIR_16409	chr6	83035120	83035213	+	83035120	83035472	A3SS	ENSMUST00000204803.2	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000009145.7	Dqx1	chr6	protein_coding	DEAQ RNA-dependent ATPase
novel_NIR_16410	chr6	83035120	83035471	+	83035120	83035411	A3SS	ENSMUST00000077502.5	novel	1.00	5	0	5	0	y	1.00	10	0	10	0	y	1.00	1	0	1	0	n	1.00	9	0	9	0	y	1.00	9	0	9	0	y	1.00	4	0	4	0	y	1.00	11	0	11	0	y	1.00	5	0	5	0	y	1.00	10	0	10	0	y	1.00	7	0	7	0	y	1.00	2	0	2	0	y	1.00	13	0	13	0	y	ENSMUSG00000009145.7	Dqx1	chr6	protein_coding	DEAQ RNA-dependent ATPase
novel_NIR_16411	chr6	83037571	83037662	+	83037571	83037678	A3SS	ENSMUST00000077502.5	novel	0.00	0	23	0	23	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.06	2	33	2	33	n	0.00	0	24	0	24	n	0.00	0	5	0	5	n	0.20	2	8	2	8	y	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	23	0	23	n	0.00	0	17	0	17	n	0.00	0	17	0	17	n	ENSMUSG00000009145.7	Dqx1	chr6	protein_coding	DEAQ RNA-dependent ATPase
novel_NIR_16412	chr6	83043261	83043544	+	83043261	83043414	A3SS	ENSMUST00000077502.5	novel	0.00	0	32	0	32	n	0.00	0	27	0	27	n	0.18	2	9	2	9	y	0.09	2	20	2	20	n	0.05	1	21	1	21	n	0.06	1	15	1	15	n	0.04	1	26	1	26	n	0.00	0	16	0	16	n	0.00	0	24	0	24	n	0.00	0	37	0	37	n	0.00	0	23	0	23	n	0.07	3	41	3	41	n	ENSMUSG00000009145.7	Dqx1	chr6	protein_coding	DEAQ RNA-dependent ATPase
novel_NIR_16413	chr6	83079619	83079916	+	83079619	83079939	A3SS	ENSMUST00000101254.9	novel	0.14	1	6	1	6	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.22	2	7	2	7	y	ENSMUSG00000107499.2	Ccdc142	chr6	protein_coding	coiled-coil domain containing 142
novel_NIR_16414	chr6	83080250	83080593	+	83080250;83080513	83080383;83080593	ES	ENSMUST00000101254.9	novel	0.00	0	9.0	0	10;8	n	0.00	0	5.0	0	4;6	n	0.00	0	1.5	0	2;1	n	0.12	1	7.5	1	8;7	n	0.00	0	4.0	0	4;4	n	0.00	0	2.0	0	3;1	n	0.71	5	2.0	5	2;2	y	0.00	0	4.5	0	4;5	n	0.18	1	4.5	1	5;4	n	0.00	0	5.5	0	7;4	n	0.00	0	5.5	0	5;6	n	0.00	0	4.0	0	5;3	n	ENSMUSG00000107499.2	Ccdc142	chr6	protein_coding	coiled-coil domain containing 142
novel_NIR_16415	chr6	83084253	83084436	+	83084148	83084436	A5SS	ENSMUST00000101254.9	novel	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.17	2	10	2	10	y	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	ENSMUSG00000107499.2	Ccdc142	chr6	protein_coding	coiled-coil domain containing 142
novel_NIR_16416	chr6	83084787	83085865	-	83084171	83085865	A3SS	ENSMUST00000141639.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000087578.2	Ccdc142os	chr6	lncRNA	coiled-coil domain containing 142, opposite strand
novel_NIR_16417	chr6	83084787	83085865	-	83084787	83085708	A5SS	ENSMUST00000154457.2	novel	0.50	2	2	2	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000087578.2	Ccdc142os	chr6	lncRNA	coiled-coil domain containing 142, opposite strand
novel_NIR_16418	chr6	83084787	83085865	-	83084787	83085792	A5SS	ENSMUST00000125657.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000087578.2	Ccdc142os	chr6	lncRNA	coiled-coil domain containing 142, opposite strand
novel_NIR_16419	chr6	83084787	83085865	-	83084895	83085865	A3SS	ENSMUST00000138422.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000087578.2	Ccdc142os	chr6	lncRNA	coiled-coil domain containing 142, opposite strand
novel_NIR_16420	chr6	83097025	83097168	-	83097025	83097139	A5SS	ENSMUST00000131936.3	novel	0.20	1	4	1	4	n	-	-	-	-	-	-	0.62	5	3	5	3	y	1.00	5	0	5	0	y	0.17	1	5	1	5	n	1.00	6	0	6	0	y	0.12	1	7	1	7	n	0.00	0	2	0	2	n	0.14	1	6	1	6	n	0.79	11	3	11	3	y	1.00	5	0	5	0	y	0.86	6	1	6	1	y	ENSMUSG00000030035.15	Wbp1	chr6	protein_coding	WW domain binding protein 1
novel_NIR_16421	chr6	83097025	83097168	-	83097025	83098184	A5SS	ENSMUST00000123394.2	novel	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	5	0	5	0	y	0.83	5	1	5	1	y	0.50	1	1	1	1	n	1.00	6	0	6	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	11	0	11	0	y	0.71	5	2	5	2	y	1.00	6	0	6	0	y	ENSMUSG00000030035.15	Wbp1	chr6	protein_coding	WW domain binding protein 1
novel_NIR_16422	chr6	83097268	83097734	-	83097268	83098184	A5SS	ENSMUST00000113936.10	novel	0.21	4	15	4	15	y	0.05	1	19	1	19	n	0.12	3	21	3	21	n	0.14	3	18	3	18	n	0.05	2	35	2	35	n	0.18	3	14	3	14	y	0.20	3	12	3	12	y	0.16	4	21	4	21	y	0.00	0	11	0	11	n	0.29	10	24	10	24	y	0.05	2	36	2	36	n	0.22	4	14	4	14	y	ENSMUSG00000030035.15	Wbp1	chr6	protein_coding	WW domain binding protein 1
novel_NIR_16423	chr6	83160315	83164746	+	83163427	83164746	5pMXE	ENSMUST00000113907.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000031865.17	Dctn1	chr6	protein_coding	dynactin 1
novel_NIR_16424	chr6	83173089	83173185	+	83173089	83174301	A3SS	ENSMUST00000113913.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000031865.17	Dctn1	chr6	protein_coding	dynactin 1
novel_NIR_16425	chr6	83326536	83328108	+	83326536	83327258	3pMXE	ENSMUST00000133122.2	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.29	2	5	2	5	y	0.00	0	7	0	7	n	1.00	1	0	1	0	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	ENSMUSG00000045160.15	Bola3	chr6	protein_coding	bolA-like 3 (E. coli)
novel_NIR_16426	chr6	83327564	83328248	+	83326219	83328248	A5SS	ENSMUST00000122216.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000045160.15	Bola3	chr6	protein_coding	bolA-like 3 (E. coli)
novel_NIR_16427	chr6	83327564	83328248	+	83326342	83328248	A5SS	ENSMUST00000120040.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000045160.15	Bola3	chr6	protein_coding	bolA-like 3 (E. coli)
novel_NIR_16428	chr6	83381802	83418199	-	83381806	83418199	A3SS	ENSMUST00000089622.11	novel	0.00	0	7	0	7	n	0.50	2	2	2	2	y	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.09	1	10	1	10	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	ENSMUSG00000034832.16	Tet3	chr6	protein_coding	tet methylcytosine dioxygenase 3
novel_NIR_16429	chr6	83419659	83422077	+	83419659	83421815	A3SS	ENSMUST00000170986.2	novel	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000051844.14	B230319C09Rik	chr6	lncRNA	RIKEN cDNA B230319C09 gene
novel_NIR_16430	chr6	83419659	83422077	+	83419659	83424058	A3SS	ENSMUST00000063376.10	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000051844.14	B230319C09Rik	chr6	lncRNA	RIKEN cDNA B230319C09 gene
novel_NIR_16431	chr6	83649854	83651228	-	83649857	83651228	A3SS	ENSMUST00000037882.8	novel	0.00	0	10	0	10	n	0.40	2	3	2	3	y	0.00	0	33	0	33	n	0.20	2	8	2	8	y	0.00	0	30	0	30	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.08	1	12	1	12	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	14	0	14	n	0.00	0	2	0	2	n	ENSMUSG00000034783.8	Cd207	chr6	protein_coding	CD207 antigen
novel_NIR_16432	chr6	8373967	8399308	+	8373967	8401077	A3SS	ENSMUST00000160705.8	novel	0.33	1	2	1	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.67	2	1	2	1	y	ENSMUSG00000089862.9	Umad1	chr6	protein_coding	UMAP1-MVP12 associated (UMA) domain containing 1
novel_NIR_16433	chr6	83772233	83773889	+	83772230	83773889	A5SS	ENSMUST00000113851.8	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.50	3	3	3	3	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000034744.14	Nagk	chr6	protein_coding	N-acetylglucosamine kinase
novel_NIR_16434	chr6	83772233	83773889	+	83772264	83773889	A5SS	ENSMUST00000037376.14	novel	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.00	0	23	0	23	n	0.00	0	11	0	11	n	0.00	0	24	0	24	n	0.00	0	25	0	25	n	0.00	0	31	0	31	n	0.00	0	14	0	14	n	0.15	3	17	3	17	y	0.00	0	25	0	25	n	0.00	0	19	0	19	n	0.00	0	28	0	28	n	ENSMUSG00000034744.14	Nagk	chr6	protein_coding	N-acetylglucosamine kinase
novel_NIR_16435	chr6	83772233	83773889	+	83772356	83773889	A5SS	ENSMUST00000150322.8	novel	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	16	0	16	n	0.00	0	5	0	5	n	0.43	3	4	3	4	y	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	ENSMUSG00000034744.14	Nagk	chr6	protein_coding	N-acetylglucosamine kinase
novel_NIR_16436	chr6	83891453	83905635	+	83844224	83905635	A5SS	ENSMUST00000204415.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030016.15	Zfp638	chr6	protein_coding	zinc finger protein 638
novel_NIR_16437	chr6	83891453	83905635	+	83891461	83905635	A5SS	ENSMUST00000204580.3	novel	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	23	0	23	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.17	2	10	2	10	y	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	ENSMUSG00000030016.15	Zfp638	chr6	protein_coding	zinc finger protein 638
novel_NIR_16438	chr6	83891453	83905635	+	83891471	83905635	A5SS	ENSMUST00000204751.3	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000030016.15	Zfp638	chr6	protein_coding	zinc finger protein 638
novel_NIR_16439	chr6	83953332	83955004	+	83953332	83956829	A3SS	ENSMUST00000113835.10	novel	0.50	3	3	3	3	y	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	1.00	4	0	4	0	y	0.20	1	4	1	4	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	1.00	4	0	4	0	y	-	-	-	-	-	-	ENSMUSG00000030016.15	Zfp638	chr6	protein_coding	zinc finger protein 638
novel_NIR_16440	chr6	83953332	83955004	+	83953332	83958666	A3SS	ENSMUST00000203324.3	novel	0.38	3	5	3	5	y	0.00	0	8	0	8	n	0.25	1	3	1	3	n	0.20	1	4	1	4	n	0.00	0	5	0	5	n	0.57	4	3	4	3	y	0.50	1	1	1	1	n	0.33	1	2	1	2	n	0.00	0	7	0	7	n	0.40	2	3	2	3	y	0.31	4	9	4	9	y	0.00	0	3	0	3	n	ENSMUSG00000030016.15	Zfp638	chr6	protein_coding	zinc finger protein 638
novel_NIR_16441	chr6	83953332	83955004	+	83953332	83960958	A3SS	ENSMUST00000203891.3	novel	0.50	3	3	3	3	y	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.14	1	6	1	6	n	0.00	0	4	0	4	n	0.80	4	1	4	1	y	0.17	1	5	1	5	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.22	2	7	2	7	y	0.44	4	5	4	5	y	0.00	0	2	0	2	n	ENSMUSG00000030016.15	Zfp638	chr6	protein_coding	zinc finger protein 638
novel_NIR_16442	chr6	83953332	83955004	+	83954411	83955004	A5SS	ENSMUST00000204751.3	novel	0.10	3	27	3	27	n	0.00	0	32	0	32	n	0.03	1	39	1	39	n	0.02	1	48	1	48	n	0.00	0	45	0	45	n	0.21	4	15	4	15	y	0.03	1	31	1	31	n	0.05	1	19	1	19	n	0.00	0	40	0	40	n	0.06	2	34	2	34	n	0.11	4	32	4	32	n	0.00	0	49	0	49	n	ENSMUSG00000030016.15	Zfp638	chr6	protein_coding	zinc finger protein 638
novel_NIR_16443	chr6	83953332	83956826	+	83953332	83956829	A3SS	ENSMUST00000113835.10	novel	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.33	1	2	1	2	n	-	-	-	-	-	-	0.20	1	4	1	4	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000030016.15	Zfp638	chr6	protein_coding	zinc finger protein 638
novel_NIR_16444	chr6	83953332	83956826	+	83953332	83958666	A3SS	ENSMUST00000203324.3	novel	0.17	1	5	1	5	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.33	2	4	2	4	y	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.33	1	2	1	2	n	0.00	0	7	0	7	n	0.40	2	3	2	3	y	0.18	2	9	2	9	y	0.00	0	3	0	3	n	ENSMUSG00000030016.15	Zfp638	chr6	protein_coding	zinc finger protein 638
novel_NIR_16445	chr6	83953332	83956826	+	83953332	83960958	A3SS	ENSMUST00000203891.3	novel	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.25	2	6	2	6	y	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.17	1	5	1	5	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.22	2	7	2	7	y	0.29	2	5	2	5	y	0.00	0	2	0	2	n	ENSMUSG00000030016.15	Zfp638	chr6	protein_coding	zinc finger protein 638
novel_NIR_16446	chr6	83956824	83958666	+	83953332	83958666	A5SS	ENSMUST00000203324.3	novel	0.17	1	5	1	5	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.62	5	3	5	3	y	0.00	0	9	0	9	n	0.00	0	3	0	3	n	ENSMUSG00000030016.15	Zfp638	chr6	protein_coding	zinc finger protein 638
novel_NIR_16447	chr6	83956824	83958666	+	83956891	83958666	A5SS&ES	ENSMUST00000113835.10	novel	0.04	1	25	1	25	n	0.00	0	28	0	28	n	0.00	0	22	0	22	n	0.00	0	18	0	18	n	0.00	0	22	0	22	n	0.00	0	8	0	8	n	0.00	0	20	0	20	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.16	5	26	5	26	y	0.00	0	5	0	5	n	0.00	0	24	0	24	n	ENSMUSG00000030016.15	Zfp638	chr6	protein_coding	zinc finger protein 638
novel_NIR_16448	chr6	84561456	84563974	-	84561456	84564563	A5SS	ENSMUST00000205228.3	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000063415.13	Cyp26b1	chr6	protein_coding	cytochrome P450, family 26, subfamily b, polypeptide 1
novel_NIR_16449	chr6	84561456	84563974	-	84561456	84564784	A5SS	ENSMUST00000204146.3	novel	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000063415.13	Cyp26b1	chr6	protein_coding	cytochrome P450, family 26, subfamily b, polypeptide 1
novel_NIR_16450	chr6	84966511	84973073	-	84966511	84980030	A5SS	ENSMUST00000160197.6	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.19	4	17	4	17	y	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000033769.17	Exoc6b	chr6	protein_coding	exocyst complex component 6B
novel_NIR_16451	chr6	85113970	85114421	-	85113913	85114421	A3SS	ENSMUST00000174769.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.26	5	14	5	14	y	-	-	-	-	-	-	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	12	0	12	n	0.00	0	12	0	12	n	ENSMUSG00000033735.10	Spr	chr6	protein_coding	sepiapterin reductase
novel_NIR_16452	chr6	85114071	85114421	-	85113913	85114421	A3SS	ENSMUST00000174769.2	novel	1.00	6	0	6	0	y	1.00	3	0	3	0	y	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.28	5	13	5	13	y	0.00	0	5	0	5	n	0.18	3	14	3	14	y	-	-	-	-	-	-	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	12	0	12	n	0.00	0	12	0	12	n	ENSMUSG00000033735.10	Spr	chr6	protein_coding	sepiapterin reductase
novel_NIR_16453	chr6	85132297	85132661	+	85132301	85132661	A5SS	ENSMUST00000089584.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000068303.7	Spr-ps1	chr6	transcribed_unprocessed_pseudogene	sepiapterin reductase pseudogene 1
novel_NIR_16454	chr6	85132297	85132661	+	85132350	85132661	A5SS	ENSMUST00000186281.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000068303.7	Spr-ps1	chr6	transcribed_unprocessed_pseudogene	sepiapterin reductase pseudogene 1
novel_NIR_16455	chr6	85233415	85233681	-	85233415	85241621	A5SS	ENSMUST00000134392.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033720.13	Sfxn5	chr6	protein_coding	sideroflexin 5
novel_NIR_16456	chr6	85237880	85241621	-	85233415	85241621	A3SS	ENSMUST00000134392.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033720.13	Sfxn5	chr6	protein_coding	sideroflexin 5
novel_NIR_16457	chr6	85246945	85266159	-	85246945;85264057	85264032;85266159	ES	ENSMUST00000045846.12	novel	0.03	1	36.0	1	40;32	n	0.00	0	21.5	0	22;21	n	0.18	3	14.0	3	14;14	y	0.00	0	49.5	0	54;45	n	0.00	0	36.5	0	38;35	n	0.17	1	5.0	1	5;5	n	0.00	0	28.5	0	27;30	n	0.00	0	18.5	0	19;18	n	0.00	0	40.0	0	43;37	n	0.00	0	58.5	0	64;53	n	0.00	0	29.5	0	33;26	n	0.00	0	37.0	0	38;36	n	ENSMUSG00000033720.13	Sfxn5	chr6	protein_coding	sideroflexin 5
novel_NIR_16458	chr6	85425573	85429087	-	85425573	85428095	5pMXE	ENSMUST00000032080.9	novel	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.05	1	21	1	21	n	0.00	0	18	0	18	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.18	2	9	2	9	y	0.00	0	14	0	14	n	0.06	1	16	1	16	n	ENSMUSG00000030008.10	Pradc1	chr6	protein_coding	protease-associated domain containing 1
novel_NIR_16459	chr6	85428359	85428739	-	85425573	85428739	A3SS	ENSMUST00000126805.8	novel	0.00	0	27	0	27	n	0.12	3	23	3	23	n	0.11	2	17	2	17	n	0.05	1	19	1	19	n	0.08	2	24	2	24	n	0.09	1	10	1	10	n	0.07	3	40	3	40	n	0.14	1	6	1	6	n	0.00	0	12	0	12	n	0.20	6	24	6	24	y	0.00	0	23	0	23	n	0.08	2	24	2	24	n	ENSMUSG00000030008.10	Pradc1	chr6	protein_coding	protease-associated domain containing 1
novel_NIR_16460	chr6	85786222	85786583	-	85786219	85786583	A3SS	ENSMUST00000087656.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	3	0	3	0	y	ENSMUSG00000079495.3	Nat8f6	chr6	protein_coding	N-acetyltransferase 8 (GCN5-related) family member 6
novel_NIR_16461	chr6	85797808	85797889	-	85797693	85797889	A3SS	ENSMUST00000174143.2	novel	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.00	0	35	0	35	n	0.00	0	15	0	15	n	0.00	0	1	0	1	n	0.00	0	21	0	21	n	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.00	0	17	0	17	n	0.06	1	15	1	15	n	0.15	2	11	2	11	y	0.00	0	12	0	12	n	ENSMUSG00000079495.3	Nat8f6	chr6	protein_coding	N-acetyltransferase 8 (GCN5-related) family member 6
novel_NIR_16462	chr6	85845012	85878174	-	85876252	85878174	3pMXE	ENSMUST00000159755.8	novel	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.91	138	13	138	13	y	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.00	0	16	0	16	n	ENSMUSG00000068299.12	Nat8f4	chr6	protein_coding	N-acetyltransferase 8 (GCN5-related) family member 4
novel_NIR_16463	chr6	85845160	85878174	-	85876252	85878174	3pMXE	ENSMUST00000159755.8	novel	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	13	0	13	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.76	45	14	45	14	y	0.00	0	16	0	16	n	0.00	0	16	0	16	n	ENSMUSG00000068299.12	Nat8f4	chr6	protein_coding	N-acetyltransferase 8 (GCN5-related) family member 4
novel_NIR_16464	chr6	85876241	85878174	-	85876252	85878174	A3SS	ENSMUST00000159755.8	novel	0.18	2	9	2	9	y	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	13	0	13	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.00	0	16	0	16	n	ENSMUSG00000068299.12	Nat8f4	chr6	protein_coding	N-acetyltransferase 8 (GCN5-related) family member 4
novel_NIR_16465	chr6	85879308	85881694	-	85879311	85881694	A3SS	ENSMUST00000095757.4	novel	0.33	3	6	3	6	y	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	17	0	17	n	ENSMUSG00000068299.12	Nat8f4	chr6	protein_coding	N-acetyltransferase 8 (GCN5-related) family member 4
novel_NIR_16466	chr6	85879311	85881569	-	85879311	85881694	A5SS	ENSMUST00000095757.4	novel	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.75	3	1	3	1	y	0.43	3	4	3	4	y	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.27	3	8	3	8	y	0.00	0	6	0	6	n	0.00	0	17	0	17	n	ENSMUSG00000068299.12	Nat8f4	chr6	protein_coding	N-acetyltransferase 8 (GCN5-related) family member 4
novel_NIR_16467	chr6	85887259	85887382	-	85887259	85887978	A5SS	ENSMUST00000172982.2	novel	0.00	0	28	0	28	n	0.00	0	17	0	17	n	0.00	0	5	0	5	n	0.16	3	16	3	16	y	0.00	0	24	0	24	n	0.00	0	4	0	4	n	0.00	0	26	0	26	n	0.00	0	6	0	6	n	0.00	0	40	0	40	n	0.00	0	42	0	42	n	0.00	0	35	0	35	n	0.00	0	43	0	43	n	ENSMUSG00000057103.12	Nat8f1	chr6	protein_coding	N-acetyltransferase 8 (GCN5-related) family member 1
novel_NIR_16468	chr6	85887259	85887620	-	85887259	85887978	A5SS	ENSMUST00000172982.2	novel	0.24	9	28	9	28	y	0.45	14	17	14	17	y	0.17	1	5	1	5	n	0.43	12	16	12	16	y	0.11	3	24	3	24	n	0.20	1	4	1	4	n	0.33	13	26	13	26	y	0.33	3	6	3	6	y	0.26	14	40	14	40	y	0.36	24	42	24	42	y	0.46	30	35	30	35	y	0.37	25	43	25	43	y	ENSMUSG00000057103.12	Nat8f1	chr6	protein_coding	N-acetyltransferase 8 (GCN5-related) family member 1
novel_NIR_16469	chr6	85887259	85887849	-	85887259	85887978	A5SS	ENSMUST00000172982.2	novel	0.00	0	28	0	28	n	0.00	0	17	0	17	n	0.00	0	5	0	5	n	0.00	0	16	0	16	n	0.00	0	24	0	24	n	0.00	0	4	0	4	n	0.32	12	26	12	26	y	0.00	0	6	0	6	n	0.00	0	40	0	40	n	0.42	30	42	30	42	y	0.00	0	35	0	35	n	0.00	0	43	0	43	n	ENSMUSG00000057103.12	Nat8f1	chr6	protein_coding	N-acetyltransferase 8 (GCN5-related) family member 1
novel_NIR_16470	chr6	85887259	85887982	-	85887259	85887978	A5SS	ENSMUST00000172982.2	novel	0.20	7	28	7	28	y	0.37	10	17	10	17	y	0.00	0	5	0	5	n	0.45	13	16	13	16	y	0.23	7	24	7	24	y	0.00	0	4	0	4	n	0.42	19	26	19	26	y	0.14	1	6	1	6	n	0.35	22	40	22	40	y	0.47	38	42	38	42	y	0.24	11	35	11	35	y	0.40	29	43	29	43	y	ENSMUSG00000057103.12	Nat8f1	chr6	protein_coding	N-acetyltransferase 8 (GCN5-related) family member 1
novel_NIR_16471	chr6	85888002	85888107	-	85888002	85892192	A5SS	ENSMUST00000174369.3	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.11	1	8	1	8	n	0.30	3	7	3	7	y	0.00	0	7	0	7	n	ENSMUSG00000057103.12	Nat8f1	chr6	protein_coding	N-acetyltransferase 8 (GCN5-related) family member 1
novel_NIR_16472	chr6	85888002	85888136	-	85888002	85892192	A5SS	ENSMUST00000174369.3	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.30	3	7	3	7	y	ENSMUSG00000057103.12	Nat8f1	chr6	protein_coding	N-acetyltransferase 8 (GCN5-related) family member 1
novel_NIR_16473	chr6	85888002	85888264	-	85888002	85892192	A5SS	ENSMUST00000174369.3	novel	0.40	2	3	2	3	y	1.00	2	0	2	0	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	ENSMUSG00000057103.12	Nat8f1	chr6	protein_coding	N-acetyltransferase 8 (GCN5-related) family member 1
novel_NIR_16474	chr6	85888002	85892158	-	85888002	85892192	A5SS	ENSMUST00000174369.3	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.29	2	5	2	5	y	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	ENSMUSG00000057103.12	Nat8f1	chr6	protein_coding	N-acetyltransferase 8 (GCN5-related) family member 1
novel_NIR_16475	chr6	85893089	85896899	+	85892772	85896899	A5SS	ENSMUST00000113753.8	novel	0.20	2	8	2	8	y	0.46	6	7	6	7	y	0.12	1	7	1	7	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.39	7	11	7	11	y	0.00	0	3	0	3	n	0.43	10	13	10	13	y	0.46	12	14	12	14	y	0.33	6	12	6	12	y	0.00	0	9	0	9	n	ENSMUSG00000054226.14	Tprkb	chr6	protein_coding	Tp53rk binding protein
novel_NIR_16476	chr6	85893089	85896899	+	85893089	85898405	A3SS	ENSMUST00000149026.5	novel	0.11	2	16	2	16	n	0.32	6	13	6	13	y	0.07	1	14	1	14	n	0.00	0	39	0	39	n	0.00	0	42	0	42	n	0.00	0	7	0	7	n	0.20	7	28	7	28	y	0.00	0	13	0	13	n	0.29	10	24	10	24	y	0.27	12	33	12	33	y	0.17	6	29	6	29	y	0.00	0	30	0	30	n	ENSMUSG00000054226.14	Tprkb	chr6	protein_coding	Tp53rk binding protein
novel_NIR_16477	chr6	85930476	85930748	-	85930476	85930819	A5SS	ENSMUST00000156821.8	novel	0.40	4	6	4	6	y	0.60	12	8	12	8	y	0.62	25	15	25	15	y	0.50	8	8	8	8	y	0.62	16	10	16	10	y	0.22	2	7	2	7	y	0.48	10	11	10	11	y	0.38	6	10	6	10	y	0.62	8	5	8	5	y	0.71	10	4	10	4	y	0.50	6	6	6	6	y	0.54	13	11	13	11	y	ENSMUSG00000030002.16	Dusp11	chr6	protein_coding	dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)
novel_NIR_16478	chr6	85930476	85930748	-	85930476	85935566	A5SS	ENSMUST00000032071.13	novel	0.08	4	48	4	48	n	0.30	12	28	12	28	y	0.24	25	80	25	80	y	0.16	8	42	8	42	y	0.31	16	36	16	36	y	0.08	2	23	2	23	n	0.14	10	64	10	64	n	0.14	6	38	6	38	n	0.15	8	44	8	44	y	0.14	10	62	10	62	n	0.10	6	52	6	52	n	0.16	13	70	13	70	y	ENSMUSG00000030002.16	Dusp11	chr6	protein_coding	dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)
novel_NIR_16479	chr6	85930476	85932278	-	85930476	85930819	5pMXE	ENSMUST00000156821.8	novel	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	15	0	15	n	0.00	0	8	0	8	n	0.33	5	10	5	10	y	0.00	0	7	0	7	n	0.15	2	11	2	11	y	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	ENSMUSG00000030002.16	Dusp11	chr6	protein_coding	dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)
novel_NIR_16480	chr6	86206466	86240138	+	86206466	86240141	A3SS	ENSMUST00000032066.13	novel	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.16	7	37	7	37	y	0.00	0	27	0	27	n	0.05	2	38	2	38	n	0.00	0	26	0	26	n	0.06	1	15	1	15	n	0.00	0	36	0	36	n	0.00	0	16	0	16	n	0.05	1	20	1	20	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	ENSMUSG00000029999.15	Tgfa	chr6	protein_coding	transforming growth factor alpha
novel_NIR_16481	chr6	86415469	86415592	+	86415469	86420709	A3SS	ENSMUST00000050497.14	novel	0.00	0	5	0	5	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.33	2	4	2	4	y	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.14	1	6	1	6	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.25	1	3	1	3	n	0.00	0	4	0	4	n	ENSMUSG00000046679.17	C87436	chr6	protein_coding	expressed sequence C87436
novel_NIR_16482	chr6	86415829	86416110	+	86415829	86416106	A3SS	ENSMUST00000143430.2	novel	0.50	1	1	1	1	n	0.20	1	4	1	4	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	1.00	4	0	4	0	y	1.00	2	0	2	0	y	0.60	3	2	3	2	y	0.38	3	5	3	5	y	ENSMUSG00000046679.17	C87436	chr6	protein_coding	expressed sequence C87436
novel_NIR_16483	chr6	86415829	86416110	+	86415829	86420709	A3SS	ENSMUST00000141972.8	novel	0.33	1	2	1	2	n	0.17	1	5	1	5	n	0.00	0	8	0	8	n	0.44	4	5	4	5	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.44	4	5	4	5	y	0.13	2	13	2	13	n	0.60	3	2	3	2	y	0.60	3	2	3	2	y	ENSMUSG00000046679.17	C87436	chr6	protein_coding	expressed sequence C87436
novel_NIR_16484	chr6	86460681	86462918	-	86460681	86464984	A5SS	ENSMUST00000188135.2	novel	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000101655.2	2310040G24Rik	chr6	lncRNA	RIKEN cDNA 2310040G24 gene
novel_NIR_16485	chr6	86460681	86464777	-	86460681	86464984	A5SS	ENSMUST00000188135.2	novel	0.75	3	1	3	1	y	1.00	6	0	6	0	y	-	-	-	-	-	-	0.75	3	1	3	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.29	2	5	2	5	y	0.73	8	3	8	3	y	0.67	4	2	4	2	y	ENSMUSG00000101655.2	2310040G24Rik	chr6	lncRNA	RIKEN cDNA 2310040G24 gene
novel_NIR_16486	chr6	86460681	86464777	-	86460699	86464777	A3SS	ENSMUST00000189386.2	novel	0.21	3	11	3	11	y	0.40	6	9	6	9	y	0.00	0	3	0	3	n	0.50	3	3	3	3	y	0.12	1	7	1	7	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.22	2	7	2	7	y	0.36	8	14	8	14	y	0.57	4	3	4	3	y	ENSMUSG00000101655.2	2310040G24Rik	chr6	lncRNA	RIKEN cDNA 2310040G24 gene
novel_NIR_16487	chr6	86460699	86464984	-	86460681	86464984	A3SS	ENSMUST00000188135.2	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.29	2	5	2	5	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.50	2	2	2	2	y	ENSMUSG00000101655.2	2310040G24Rik	chr6	lncRNA	RIKEN cDNA 2310040G24 gene
novel_NIR_16488	chr6	86460699	86464984	-	86460699	86464777	A5SS	ENSMUST00000189386.2	novel	0.00	0	11	0	11	n	0.10	1	9	1	9	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.33	2	4	2	4	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.07	1	14	1	14	n	0.40	2	3	2	3	y	ENSMUSG00000101655.2	2310040G24Rik	chr6	lncRNA	RIKEN cDNA 2310040G24 gene
novel_NIR_16489	chr6	86463135	86464777	-	86460699	86464777	A3SS	ENSMUST00000189386.2	novel	0.15	2	11	2	11	y	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.12	1	7	1	7	n	0.00	0	14	0	14	n	0.40	2	3	2	3	y	ENSMUSG00000101655.2	2310040G24Rik	chr6	lncRNA	RIKEN cDNA 2310040G24 gene
novel_NIR_16490	chr6	86470576	86474069	-	86470576	86470781	5pMXE	ENSMUST00000203987.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000107876.2	Gm43936	chr6	lncRNA	predicted gene, 43936
novel_NIR_16491	chr6	86502853	86504873	+	86503264	86504873	5pMXE	ENSMUST00000204068.3	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	6	0	6	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000097048.8	1600020E01Rik	chr6	lncRNA	RIKEN cDNA 1600020E01 gene
novel_NIR_16492	chr6	86502853	86504873	+	86504349	86504873	5pMXE	ENSMUST00000204738.3	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	6	0	6	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000097048.8	1600020E01Rik	chr6	lncRNA	RIKEN cDNA 1600020E01 gene
novel_NIR_16493	chr6	86502853	86504873	+	86504415	86504873	5pMXE	ENSMUST00000204047.3	novel	0.00	0	11	0	11	n	0.25	2	6	2	6	y	0.09	1	10	1	10	n	0.60	6	4	6	4	y	0.27	3	8	3	8	y	0.12	1	7	1	7	n	0.04	1	25	1	25	n	0.00	0	8	0	8	n	0.05	1	19	1	19	n	0.00	0	19	0	19	n	0.00	0	13	0	13	n	0.09	2	20	2	20	n	ENSMUSG00000097048.8	1600020E01Rik	chr6	lncRNA	RIKEN cDNA 1600020E01 gene
novel_NIR_16494	chr6	86502853	86504873	+	86504513	86504873	5pMXE	ENSMUST00000181928.4	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.33	1	2	1	2	n	0.67	6	3	6	3	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.40	2	3	2	3	y	ENSMUSG00000097048.8	1600020E01Rik	chr6	lncRNA	RIKEN cDNA 1600020E01 gene
novel_NIR_16495	chr6	86503799	86504873	+	86503264	86504873	A5SS	ENSMUST00000204068.3	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000097048.8	1600020E01Rik	chr6	lncRNA	RIKEN cDNA 1600020E01 gene
novel_NIR_16496	chr6	86503799	86504873	+	86504349	86504873	A5SS	ENSMUST00000204738.3	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000097048.8	1600020E01Rik	chr6	lncRNA	RIKEN cDNA 1600020E01 gene
novel_NIR_16497	chr6	86503799	86504873	+	86504415	86504873	5pMXE	ENSMUST00000204047.3	novel	0.00	0	11	0	11	n	0.33	3	6	3	6	y	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.04	1	25	1	25	n	0.00	0	8	0	8	n	0.00	0	19	0	19	n	0.00	0	19	0	19	n	0.19	3	13	3	13	y	0.00	0	20	0	20	n	ENSMUSG00000097048.8	1600020E01Rik	chr6	lncRNA	RIKEN cDNA 1600020E01 gene
novel_NIR_16498	chr6	86503799	86504873	+	86504513	86504873	5pMXE	ENSMUST00000181928.4	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.00	0	3	0	3	n	ENSMUSG00000097048.8	1600020E01Rik	chr6	lncRNA	RIKEN cDNA 1600020E01 gene
novel_NIR_16499	chr6	86509289	86534317	+	86509289	86527899	3pMXE	ENSMUST00000204068.3	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000097048.8	1600020E01Rik	chr6	lncRNA	RIKEN cDNA 1600020E01 gene
novel_NIR_16500	chr6	86509289	86534317	+	86509289	86557779	A3SS	ENSMUST00000204738.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000097048.8	1600020E01Rik	chr6	lncRNA	RIKEN cDNA 1600020E01 gene
novel_NIR_16501	chr6	8653535	8656362	-	8653535	8658220	A5SS	ENSMUST00000156695.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000062995.13	Ica1	chr6	protein_coding	islet cell autoantigen 1
novel_NIR_16502	chr6	8653535	8656362	-	8653535;8653692	8653630;8656362	ES	ENSMUST00000115520.8	novel	0.00	0	6.0	0	6;6	n	0.00	0	4.0	0	3;5	n	0.06	1	17.0	1	15;19	n	0.00	0	0.5	0	1;0	n	0.00	0	7.0	0	8;6	n	0.21	3	11.0	3	9;13	y	0.00	0	6.5	0	8;5	n	0.00	0	3.5	0	3;4	n	0.00	0	3.0	0	4;2	n	0.00	0	0.5	0	1;0	n	0.00	0	2.5	0	0;5	n	0.00	0	2.0	0	1;3	n	ENSMUSG00000062995.13	Ica1	chr6	protein_coding	islet cell autoantigen 1
novel_NIR_16503	chr6	8653535	8656362	-	8653692	8656362	A3SS&ES	ENSMUST00000115519.8	novel	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.05	1	19	1	19	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.19	3	13	3	13	y	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	3	0	3	n	ENSMUSG00000062995.13	Ica1	chr6	protein_coding	islet cell autoantigen 1
novel_NIR_16504	chr6	86640082	86642001	-	86640082	86645520	A5SS	ENSMUST00000001184.10	novel	0.00	0	6	0	6	n	0.33	2	4	2	4	y	0.00	0	15	0	15	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	ENSMUSG00000001156.10	Mxd1	chr6	protein_coding	MAX dimerization protein 1
novel_NIR_16505	chr6	86659958	86661211	-	86659958	86661207	A5SS	ENSMUST00000131674.2	novel	0.29	4	10	4	10	y	0.43	3	4	3	4	y	1.00	1	0	1	0	n	0.25	1	3	1	3	n	0.71	5	2	5	2	y	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.50	2	2	2	2	y	0.00	0	7	0	7	n	0.67	8	4	8	4	y	0.00	0	3	0	3	n	0.33	3	6	3	6	y	ENSMUSG00000001158.14	Snrnp27	chr6	protein_coding	small nuclear ribonucleoprotein 27 (U4/U6.U5)
novel_NIR_16506	chr6	86752030	86754987	-	86752030	86770491	A5SS	ENSMUST00000204441.3	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000029994.18	Anxa4	chr6	protein_coding	annexin A4
novel_NIR_16507	chr6	86933554	86940978	+	86933554	86936014	A3SS&ES	ENSMUST00000089519.13	novel	0.00	0	6	0	6	n	-	-	-	-	-	-	0.17	2	10	2	10	y	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	ENSMUSG00000057230.15	Aak1	chr6	protein_coding	AP2 associated kinase 1
novel_NIR_16508	chr6	86933554	86940978	+	86933554	86940975	A3SS	ENSMUST00000003710.10	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.22	2	7	2	7	y	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000057230.15	Aak1	chr6	protein_coding	AP2 associated kinase 1
novel_NIR_16509	chr6	86933554	86940978	+	86936256	86940978	5pMXE	ENSMUST00000204613.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000057230.15	Aak1	chr6	protein_coding	AP2 associated kinase 1
novel_NIR_16510	chr6	86948068	86959524	+	86948068	86972822	A3SS	ENSMUST00000204139.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.75	3	1	3	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000057230.15	Aak1	chr6	protein_coding	AP2 associated kinase 1
novel_NIR_16511	chr6	86948068	86959524	+	86948068;86958379	86958278;86959524	ES	ENSMUST00000089519.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	1.00	3	0.0	3	0;0	y	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000057230.15	Aak1	chr6	protein_coding	AP2 associated kinase 1
novel_NIR_16512	chr6	86959625	86972822	+	86944355	86972822	A5SS	ENSMUST00000204613.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.67	2	1	2	1	y	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.14	1	6	1	6	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	ENSMUSG00000057230.15	Aak1	chr6	protein_coding	AP2 associated kinase 1
novel_NIR_16513	chr6	86959625	86972822	+	86948068	86972822	A5SS	ENSMUST00000204139.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000057230.15	Aak1	chr6	protein_coding	AP2 associated kinase 1
novel_NIR_16514	chr6	86959625	86972822	+	86959625	86960794	A3SS&ES	ENSMUST00000089519.13	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000057230.15	Aak1	chr6	protein_coding	AP2 associated kinase 1
novel_NIR_16515	chr6	86959625	86972822	+	86972046	86972822	5pMXE	ENSMUST00000204793.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000057230.15	Aak1	chr6	protein_coding	AP2 associated kinase 1
novel_NIR_16516	chr6	87822763	87827886	-	87826091	87827886	A3SS&ES	ENSMUST00000113617.3	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.75	3	1	3	1	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000030057.16	Cnbp	chr6	protein_coding	cellular nucleic acid binding protein
novel_NIR_16517	chr6	87894109	87894821	+	87893749	87894821	A5SS	ENSMUST00000204232.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000030060.15	Hmces	chr6	protein_coding	5-hydroxymethylcytosine (hmC) binding, ES cell specific
novel_NIR_16518	chr6	87990680	87992659	-	87990680	87991568	A5SS&ES	ENSMUST00000113596.8	novel	0.75	3	1	3	1	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000079477.10	Rab7	chr6	protein_coding	RAB7, member RAS oncogene family
novel_NIR_16519	chr6	87990680	87992659	-	87990680	87992614	A5SS	ENSMUST00000113597.8	novel	0.17	3	15	3	15	y	0.00	0	12	0	12	n	0.00	0	20	0	20	n	0.00	0	10	0	10	n	0.00	0	19	0	19	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	18	0	18	n	0.00	0	10	0	10	n	0.00	0	21	0	21	n	ENSMUSG00000079477.10	Rab7	chr6	protein_coding	RAB7, member RAS oncogene family
novel_NIR_16520	chr6	87990680	87992659	-	87990680	87996618	A5SS	ENSMUST00000095048.6	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000079477.10	Rab7	chr6	protein_coding	RAB7, member RAS oncogene family
novel_NIR_16521	chr6	87990680	87992659	-	87990680	88021919	A5SS	ENSMUST00000113598.8	novel	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000079477.10	Rab7	chr6	protein_coding	RAB7, member RAS oncogene family
novel_NIR_16522	chr6	87990680	88015792	-	87990680	87991568	A5SS&ES	ENSMUST00000113596.8	novel	0.50	1	1	1	1	n	0.50	2	2	2	2	n	0.50	2	2	2	2	y	0.50	2	2	2	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.40	2	3	2	3	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	ENSMUSG00000079477.10	Rab7	chr6	protein_coding	RAB7, member RAS oncogene family
novel_NIR_16523	chr6	87990680	88015792	-	87990680	87996618	5pMXE	ENSMUST00000095048.6	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000079477.10	Rab7	chr6	protein_coding	RAB7, member RAS oncogene family
novel_NIR_16524	chr6	87990680	88015792	-	87990680	88021919	A5SS	ENSMUST00000113598.8	novel	1.00	1	0	1	0	n	0.67	2	1	2	1	y	0.67	2	1	2	1	y	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000079477.10	Rab7	chr6	protein_coding	RAB7, member RAS oncogene family
novel_NIR_16525	chr6	87990680	88020359	-	87990680	87991568	A5SS&ES	ENSMUST00000113596.8	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	ENSMUSG00000079477.10	Rab7	chr6	protein_coding	RAB7, member RAS oncogene family
novel_NIR_16526	chr6	87990680	88020359	-	87990680	87996618	5pMXE	ENSMUST00000095048.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000079477.10	Rab7	chr6	protein_coding	RAB7, member RAS oncogene family
novel_NIR_16527	chr6	87990680	88020359	-	87990680	88021919	A5SS	ENSMUST00000113598.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000079477.10	Rab7	chr6	protein_coding	RAB7, member RAS oncogene family
novel_NIR_16528	chr6	87990680	88021216	-	87990680	87991568	A5SS&ES	ENSMUST00000113596.8	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.75	3	1	3	1	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000079477.10	Rab7	chr6	protein_coding	RAB7, member RAS oncogene family
novel_NIR_16529	chr6	87990680	88021216	-	87990680	87996618	5pMXE	ENSMUST00000095048.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000079477.10	Rab7	chr6	protein_coding	RAB7, member RAS oncogene family
novel_NIR_16530	chr6	87990680	88021216	-	87990680	88021919	A5SS	ENSMUST00000113598.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000079477.10	Rab7	chr6	protein_coding	RAB7, member RAS oncogene family
novel_NIR_16531	chr6	87990680;88015862	88015792;88022055	-	87990680;87992700	87991568;88022055	MXE	ENSMUST00000113596.8	novel	0.06	0.5	8.0	1;0	1;15	n	0.45	2.5	3.0	2;3	2;4	y	0.10	1.0	9.5	2;0	2;17	n	0.11	1.5	12.0	2;1	2;22	n	0.12	1.5	10.5	0;3	1;20	n	0.09	0.5	5.0	0;1	1;9	n	0.14	1.0	6.0	1;1	1;11	n	0.00	0.0	7.0	0;0	3;11	n	0.00	0.0	5.0	0;0	0;10	n	0.17	2.0	9.5	2;2	3;16	y	0.00	0.0	4.0	0;0	1;7	n	0.09	0.5	5.0	1;0	0;10	n	ENSMUSG00000079477.10	Rab7	chr6	protein_coding	RAB7, member RAS oncogene family
novel_NIR_16532	chr6	87990680;88015862	88015792;88022055	-	87990680;87992700	87992614;88022055	MXE	ENSMUST00000204126.2	novel	0.03	0.5	15.0	1;0	15;15	n	0.24	2.5	8.0	2;3	12;4	y	0.05	1.0	18.5	2;0	20;17	n	0.09	1.5	16.0	2;1	10;22	n	0.07	1.5	19.5	0;3	19;20	n	0.07	0.5	6.5	0;1	4;9	n	0.09	1.0	10.5	1;1	10;11	n	0.00	0.0	9.5	0;0	8;11	n	0.00	0.0	10.0	0;0	10;10	n	0.11	2.0	17.0	2;2	18;16	n	0.00	0.0	8.5	0;0	10;7	n	0.03	0.5	15.5	1;0	21;10	n	ENSMUSG00000079477.10	Rab7	chr6	protein_coding	RAB7, member RAS oncogene family
novel_NIR_16533	chr6	88017078	88022055	-	87992700	88022055	A3SS	ENSMUST00000113596.8	novel	0.00	0	15	0	15	n	0.00	0	4	0	4	n	0.00	0	17	0	17	n	0.00	0	22	0	22	n	0.00	0	20	0	20	n	0.18	2	9	2	9	y	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	ENSMUSG00000079477.10	Rab7	chr6	protein_coding	RAB7, member RAS oncogene family
novel_NIR_16534	chr6	88061776	88065338	+	88061776	88066971	A3SS	ENSMUST00000204838.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030062.8	Rpn1	chr6	protein_coding	ribophorin I
novel_NIR_16535	chr6	88235363	88258531	-	88249083	88258531	A3SS&ES	ENSMUST00000205179.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000033216.10	Eefsec	chr6	protein_coding	eukaryotic elongation factor, selenocysteine-tRNA-specific
novel_NIR_16536	chr6	88258687	88312790	-	88258687	88332465	A5SS	ENSMUST00000203213.3	novel	0.00	0	5	0	5	n	0.25	2	6	2	6	y	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	ENSMUSG00000033216.10	Eefsec	chr6	protein_coding	eukaryotic elongation factor, selenocysteine-tRNA-specific
novel_NIR_16537	chr6	88289790	88332465	-	88258687	88332465	A3SS	ENSMUST00000203213.3	novel	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.20	1	4	1	4	n	0.00	0	11	0	11	n	0.29	2	5	2	5	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	ENSMUSG00000033216.10	Eefsec	chr6	protein_coding	eukaryotic elongation factor, selenocysteine-tRNA-specific
novel_NIR_16538	chr6	88480747	88480821	+	88480747	88480872	A3SS	ENSMUST00000203181.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	13	0	13	0	y	ENSMUSG00000107659.2	Gm44170	chr6	lncRNA	predicted gene, 44170
novel_NIR_16539	chr6	88480747	88480824	+	88480747	88480872	A3SS	ENSMUST00000203181.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000107659.2	Gm44170	chr6	lncRNA	predicted gene, 44170
novel_NIR_16540	chr6	88698805	88703513	-	88698805	88699924	5pMXE	ENSMUST00000181064.2	novel	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	9	0	9	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	9	0	9	0	y	1.00	6	0	6	0	y	1.00	1	0	1	0	n	ENSMUSG00000097730.4	Gm26588	chr6	lncRNA	predicted gene, 26588
novel_NIR_16541	chr6	88698805	88703513	-	88698805	88702766	5pMXE	ENSMUST00000181355.4	novel	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	9	0	9	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.60	3	2	3	2	y	0.82	9	2	9	2	y	1.00	6	0	6	0	y	0.50	1	1	1	1	n	ENSMUSG00000097730.4	Gm26588	chr6	lncRNA	predicted gene, 26588
novel_NIR_16542	chr6	88710672	88741578	+	88702827	88741578	A5SS	ENSMUST00000113585.9	novel	0.08	9	107	9	107	n	0.11	12	101	12	101	n	0.30	32	74	32	74	y	0.07	17	218	17	218	n	0.11	21	175	21	175	n	0.29	22	53	22	53	y	0.16	28	145	28	145	y	0.19	20	83	20	83	y	0.06	6	88	6	88	n	0.06	17	252	17	252	n	0.05	8	152	8	152	n	0.01	1	110	1	110	n	ENSMUSG00000033174.18	Mgll	chr6	protein_coding	monoglyceride lipase
novel_NIR_16543	chr6	88786428	88789761	+	88786428	88790862	A3SS	ENSMUST00000113581.8	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.22	2	7	2	7	y	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.00	0	11	0	11	n	ENSMUSG00000033174.18	Mgll	chr6	protein_coding	monoglyceride lipase
novel_NIR_16544	chr6	88795645	88800239	+	88795645	88800308	A3SS	ENSMUST00000113582.8	novel	0.43	3	4	3	4	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.86	6	1	6	1	y	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000033174.18	Mgll	chr6	protein_coding	monoglyceride lipase
novel_NIR_16545	chr6	88795645;88800220	88800213;88800308	+	88795645	88800308	cassetteExon	ENSMUST00000113582.8	novel	0.00	0.0	4	0;0	4	n	-	-	-	-	-	-	0.00	0.0	2	0;0	2	n	1.00	0.5	0	0;1	0	n	1.00	1.0	0	0;2	0	n	0.00	0.0	2	0;0	2	n	0.00	0.0	4	0;0	4	n	0.00	0.0	4	0;0	4	n	1.00	0.5	0	1;0	0	n	0.71	2.5	1	2;3	1	y	0.00	0.0	3	0;0	3	n	-	-	-	-	-	-	ENSMUSG00000033174.18	Mgll	chr6	protein_coding	monoglyceride lipase
novel_NIR_16546	chr6	88800220	88800308	+	88795645	88800308	A5SS	ENSMUST00000113582.8	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.75	3	1	3	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000033174.18	Mgll	chr6	protein_coding	monoglyceride lipase
novel_NIR_16547	chr6	88813434	88813594	-	88813434	88815100	A5SS	ENSMUST00000203120.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000030083.12	Abtb1	chr6	protein_coding	ankyrin repeat and  BTB (POZ) domain containing 1
novel_NIR_16548	chr6	88879512	88882742	+	88879512	88886272	A3SS	ENSMUST00000138415.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000002871.15	Tpra1	chr6	protein_coding	transmembrane protein, adipocyte asscociated 1
novel_NIR_16549	chr6	88883060	88884725	+	88883060	88883520	A3SS&ES	ENSMUST00000203345.3	novel	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000002871.15	Tpra1	chr6	protein_coding	transmembrane protein, adipocyte asscociated 1
novel_NIR_16550	chr6	88883060	88884725	+	88883060	88883523	3pMXE	ENSMUST00000141163.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000002871.15	Tpra1	chr6	protein_coding	transmembrane protein, adipocyte asscociated 1
novel_NIR_16551	chr6	88883060	88884725	+	88883060	88884552	A3SS	ENSMUST00000151379.2	novel	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.60	3	2	3	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	-	-	-	-	-	-	ENSMUSG00000002871.15	Tpra1	chr6	protein_coding	transmembrane protein, adipocyte asscociated 1
novel_NIR_16552	chr6	88883060	88884725	+	88883060	88884558	A3SS	ENSMUST00000153874.8	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	1.00	3	0	3	0	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000002871.15	Tpra1	chr6	protein_coding	transmembrane protein, adipocyte asscociated 1
novel_NIR_16553	chr6	88887243	88887353	+	88887243	88887530	A3SS	ENSMUST00000129979.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000002871.15	Tpra1	chr6	protein_coding	transmembrane protein, adipocyte asscociated 1
novel_NIR_16554	chr6	88887243	88887353	+	88887243	88887779	A3SS	ENSMUST00000150236.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000002871.15	Tpra1	chr6	protein_coding	transmembrane protein, adipocyte asscociated 1
novel_NIR_16555	chr6	88887383	88887557	+	88887383	88887779	A3SS	ENSMUST00000203648.3	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000002871.15	Tpra1	chr6	protein_coding	transmembrane protein, adipocyte asscociated 1
novel_NIR_16556	chr6	88887632	88887787	+	88887632	88888062	A3SS	ENSMUST00000123257.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000002871.15	Tpra1	chr6	protein_coding	transmembrane protein, adipocyte asscociated 1
novel_NIR_16557	chr6	89306889	89307318	-	89306796	89307318	A3SS	ENSMUST00000163139.8	novel	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	ENSMUSG00000030084.12	Plxna1	chr6	protein_coding	plexin A1
novel_NIR_16558	chr6	90201353	90202365	-	90150314	90202365	A3SS	ENSMUST00000204789.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.12	1	7	1	7	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.67	2	1	2	1	y	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000092247.3	Gm20426	chr6	transcribed_processed_pseudogene	predicted gene 20426
novel_NIR_16559	chr6	90202499	90209669	-	90202449	90209669	A3SS	ENSMUST00000204789.2	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	9	0	9	0	y	0.33	1	2	1	2	n	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	2	0	2	0	y	ENSMUSG00000092247.3	Gm20426	chr6	transcribed_processed_pseudogene	predicted gene 20426
novel_NIR_16560	chr6	90439707	90441376	+	90439707	90441619	A3SS	ENSMUST00000203039.3	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030087.12	Klf15	chr6	protein_coding	Kruppel-like factor 15
novel_NIR_16561	chr6	90443233	90443402	+	90441825	90443402	A5SS	ENSMUST00000203039.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030087.12	Klf15	chr6	protein_coding	Kruppel-like factor 15
novel_NIR_16562	chr6	90444505	90450549	+	90444505	90451065	A3SS	ENSMUST00000205136.2	novel	0.71	5	2	5	2	y	0.75	6	2	6	2	y	1.00	5	0	5	0	y	0.80	4	1	4	1	y	1.00	12	0	12	0	y	1.00	2	0	2	0	y	0.50	1	1	1	1	n	0.90	9	1	9	1	y	1.00	1	0	1	0	n	0.70	7	3	7	3	y	0.80	8	2	8	2	y	1.00	14	0	14	0	y	ENSMUSG00000030087.12	Klf15	chr6	protein_coding	Kruppel-like factor 15
novel_NIR_16563	chr6	90444505	90450552	+	90444505	90451065	A3SS	ENSMUST00000205136.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.50	2	2	2	2	y	-	-	-	-	-	-	ENSMUSG00000030087.12	Klf15	chr6	protein_coding	Kruppel-like factor 15
novel_NIR_16564	chr6	90444505	90453664	+	90444505	90451065	3pMXE	ENSMUST00000205136.2	novel	0.60	3	2	3	2	y	0.50	2	2	2	2	y	1.00	2	0	2	0	y	0.80	4	1	4	1	y	1.00	6	0	6	0	y	-	-	-	-	-	-	0.83	5	1	5	1	y	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.67	6	3	6	3	y	0.75	6	2	6	2	y	1.00	2	0	2	0	y	ENSMUSG00000030087.12	Klf15	chr6	protein_coding	Kruppel-like factor 15
novel_NIR_16565	chr6	90495861	90495941	+	90463513	90495941	A5SS	ENSMUST00000203807.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000108111.2	Gm45901	chr6	lncRNA	predicted gene 45901
novel_NIR_16566	chr6	90517854	90534184	+	90463513	90534184	A5SS	ENSMUST00000127199.2	novel	1.00	12	0	12	0	y	-	-	-	-	-	-	1.00	15	0	15	0	y	1.00	20	0	20	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	10	0	10	0	y	1.00	13	0	13	0	y	1.00	10	0	10	0	y	1.00	11	0	11	0	y	1.00	12	0	12	0	y	1.00	10	0	10	0	y	ENSMUSG00000030088.16	Aldh1l1	chr6	protein_coding	aldehyde dehydrogenase 1 family, member L1
novel_NIR_16567	chr6	90527404	90534184	+	90463513	90534184	A5SS	ENSMUST00000127199.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	ENSMUSG00000030088.16	Aldh1l1	chr6	protein_coding	aldehyde dehydrogenase 1 family, member L1
novel_NIR_16568	chr6	90528314	90534184	+	90463513	90534184	A5SS	ENSMUST00000127199.2	novel	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	15	0	15	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	1.00	16	0	16	0	y	ENSMUSG00000030088.16	Aldh1l1	chr6	protein_coding	aldehyde dehydrogenase 1 family, member L1
novel_NIR_16569	chr6	90610737;90610975	90610886;90612232	+	90610737	90612232	cassetteExon	ENSMUST00000044019.16	novel	0.00	0.0	8	0;0	8	n	0.22	2.0	7	2;2	7	y	0.00	0.0	14	0;0	14	n	0.00	0.0	18	0;0	18	n	0.00	0.0	12	0;0	12	n	0.00	0.0	11	0;0	11	n	0.00	0.0	4	0;0	4	n	0.00	0.0	3	0;0	3	n	0.00	0.0	4	0;0	4	n	0.00	0.0	9	0;0	9	n	0.00	0.0	2	0;0	2	n	0.00	0.0	14	0;0	14	n	ENSMUSG00000030089.16	Slc41a3	chr6	protein_coding	solute carrier family 41, member 3
novel_NIR_16570	chr6	90638007	90644882	-	90638007;90641053	90641004;90644882	ES	ENSMUST00000101153.10	novel	0.00	0	10.5	0	1;20	n	0.09	1	10.0	1	2;18	n	0.00	0	1.0	0	0;2	n	0.00	0	7.0	0	0;14	n	0.00	0	9.5	0	1;18	n	0.00	0	6.5	0	0;13	n	0.38	3	5.0	3	0;10	y	0.00	0	4.0	0	0;8	n	0.00	0	3.5	0	0;7	n	0.18	2	9.0	2	1;17	y	0.00	0	5.0	0	0;10	n	0.00	0	7.5	0	1;14	n	ENSMUSG00000034312.16	Iqsec1	chr6	protein_coding	IQ motif and Sec7 domain 1
novel_NIR_16571	chr6	90638007	90644882	-	90639937	90644882	3pMXE	ENSMUST00000141434.2	novel	0.00	0	8	0	8	n	0.11	1	8	1	8	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.43	3	4	3	4	y	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.18	2	9	2	9	y	0.00	0	15	0	15	n	0.00	0	10	0	10	n	ENSMUSG00000034312.16	Iqsec1	chr6	protein_coding	IQ motif and Sec7 domain 1
novel_NIR_16572	chr6	90638007	90644882	-	90641053	90644882	A3SS&ES	ENSMUST00000101151.10	novel	0.00	0	20	0	20	n	0.05	1	18	1	18	n	0.00	0	2	0	2	n	0.00	0	14	0	14	n	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.23	3	10	3	10	y	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.11	2	17	2	17	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	ENSMUSG00000034312.16	Iqsec1	chr6	protein_coding	IQ motif and Sec7 domain 1
novel_NIR_16573	chr6	90639937	90645623	-	90639937	90644882	5pMXE	ENSMUST00000141434.2	novel	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.18	2	9	2	9	y	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	ENSMUSG00000034312.16	Iqsec1	chr6	protein_coding	IQ motif and Sec7 domain 1
novel_NIR_16574	chr6	91002340	91005708	-	91002340;91003961	91003741;91005708	ES	ENSMUST00000032179.14	novel	0.00	0	16.5	0	14;19	n	0.00	0	11.0	0	12;10	n	0.00	0	11.0	0	10;12	n	0.00	0	21.5	0	25;18	n	0.00	0	23.0	0	28;18	n	0.19	2	8.5	2	7;10	y	0.00	0	16.5	0	15;18	n	0.00	0	15.0	0	17;13	n	0.00	0	10.5	0	11;10	n	0.00	0	24.5	0	25;24	n	0.00	0	11.0	0	7;15	n	0.00	0	15.0	0	11;19	n	ENSMUSG00000030091.18	Nup210	chr6	protein_coding	nucleoporin 210
novel_NIR_16575	chr6	91002340	91005708	-	91003961	91005708	3pMXE	ENSMUST00000153350.2	novel	0.00	0	19	0	19	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.00	0	18	0	18	n	0.00	0	18	0	18	n	0.17	2	10	2	10	y	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.00	0	24	0	24	n	0.00	0	15	0	15	n	0.00	0	19	0	19	n	ENSMUSG00000030091.18	Nup210	chr6	protein_coding	nucleoporin 210
novel_NIR_16576	chr6	91078381	91082635	-	91078381	91093600	A5SS	ENSMUST00000032179.14	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.12	1	7	1	7	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.75	3	1	3	1	y	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000030091.18	Nup210	chr6	protein_coding	nucleoporin 210
novel_NIR_16577	chr6	91481710	91483821	-	91481710;91482457	91482373;91483821	ES	ENSMUST00000032182.5	novel	0.00	0	9.5	0	11;8	n	0.00	0	14.0	0	11;17	n	0.00	0	23.0	0	24;22	n	0.00	0	29.5	0	23;36	n	0.00	0	30.0	0	23;37	n	0.17	2	10.0	2	7;13	y	0.00	0	25.0	0	25;25	n	0.10	1	9.0	1	8;10	n	0.00	0	18.0	0	10;26	n	0.00	0	30.0	0	29;31	n	0.00	0	17.0	0	13;21	n	0.00	0	25.0	0	22;28	n	ENSMUSG00000030094.9	Xpc	chr6	protein_coding	xeroderma pigmentosum, complementation group C
novel_NIR_16578	chr6	91682958	91688493	+	91676013	91688493	A5SS	ENSMUST00000205480.2	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.80	4	1	4	1	y	ENSMUSG00000030096.9	Slc6a6	chr6	protein_coding	solute carrier family 6 (neurotransmitter transporter, taurine), member 6
novel_NIR_16579	chr6	91682958	91700263	+	91661289	91700263	A5SS	ENSMUST00000206545.2	novel	1.00	20	0	20	0	y	-	-	-	-	-	-	0.96	25	1	25	1	y	0.00	0	1	0	1	n	1.00	21	0	21	0	y	1.00	16	0	16	0	y	1.00	32	0	32	0	y	-	-	-	-	-	-	1.00	27	0	27	0	y	0.97	34	1	34	1	y	-	-	-	-	-	-	1.00	17	0	17	0	y	ENSMUSG00000030096.9	Slc6a6	chr6	protein_coding	solute carrier family 6 (neurotransmitter transporter, taurine), member 6
novel_NIR_16580	chr6	91682958	91700263	+	91676013	91700263	A5SS	ENSMUST00000032185.9	novel	0.62	20	12	20	12	y	0.00	0	8	0	8	n	0.69	25	11	25	11	y	0.00	0	13	0	13	n	0.53	21	19	21	19	y	0.84	16	3	16	3	y	0.62	32	20	32	20	y	0.00	0	14	0	14	n	0.61	27	17	27	17	y	0.64	34	19	34	19	y	0.00	0	25	0	25	n	0.32	17	36	17	36	y	ENSMUSG00000030096.9	Slc6a6	chr6	protein_coding	solute carrier family 6 (neurotransmitter transporter, taurine), member 6
novel_NIR_16581	chr6	91682958	91700263	+	91678806	91700263	A5SS	ENSMUST00000205828.2	novel	0.95	20	1	20	1	y	-	-	-	-	-	-	1.00	25	0	25	0	y	-	-	-	-	-	-	1.00	21	0	21	0	y	1.00	16	0	16	0	y	1.00	32	0	32	0	y	-	-	-	-	-	-	1.00	27	0	27	0	y	0.97	34	1	34	1	y	-	-	-	-	-	-	0.85	17	3	17	3	y	ENSMUSG00000030096.9	Slc6a6	chr6	protein_coding	solute carrier family 6 (neurotransmitter transporter, taurine), member 6
novel_NIR_16582	chr6	91682958	91700263	+	91688609	91700263	A5SS&ES	ENSMUST00000205480.2	novel	0.91	20	2	20	2	y	-	-	-	-	-	-	0.93	25	2	25	2	y	0.00	0	1	0	1	n	0.84	21	4	21	4	y	1.00	16	0	16	0	y	0.97	32	1	32	1	y	-	-	-	-	-	-	0.82	27	6	27	6	y	0.77	34	10	34	10	y	0.00	0	2	0	2	n	0.89	17	2	17	2	y	ENSMUSG00000030096.9	Slc6a6	chr6	protein_coding	solute carrier family 6 (neurotransmitter transporter, taurine), member 6
novel_NIR_16583	chr6	91688609	91689861	+	91688609	91700263	A3SS	ENSMUST00000205480.2	novel	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.20	1	4	1	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.25	2	6	2	6	y	0.29	4	10	4	10	y	0.33	1	2	1	2	n	0.00	0	2	0	2	n	ENSMUSG00000030096.9	Slc6a6	chr6	protein_coding	solute carrier family 6 (neurotransmitter transporter, taurine), member 6
novel_NIR_16584	chr6	91690025	91700263	+	91661289	91700263	A5SS	ENSMUST00000206545.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000030096.9	Slc6a6	chr6	protein_coding	solute carrier family 6 (neurotransmitter transporter, taurine), member 6
novel_NIR_16585	chr6	91690025	91700263	+	91678806	91700263	A5SS	ENSMUST00000205828.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	3	3	3	3	y	ENSMUSG00000030096.9	Slc6a6	chr6	protein_coding	solute carrier family 6 (neurotransmitter transporter, taurine), member 6
novel_NIR_16586	chr6	91690025	91700263	+	91688609	91700263	A5SS	ENSMUST00000205480.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.60	3	2	3	2	y	ENSMUSG00000030096.9	Slc6a6	chr6	protein_coding	solute carrier family 6 (neurotransmitter transporter, taurine), member 6
novel_NIR_16587	chr6	91705372	91712072	+	91676013	91712072	A5SS	ENSMUST00000205443.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030096.9	Slc6a6	chr6	protein_coding	solute carrier family 6 (neurotransmitter transporter, taurine), member 6
novel_NIR_16588	chr6	91872327	91875131	+	91872327	91875128	A3SS	ENSMUST00000037783.7	novel	0.20	4	16	4	16	y	0.00	0	24	0	24	n	0.00	0	21	0	21	n	0.09	2	21	2	21	n	0.15	4	22	4	22	y	0.00	0	14	0	14	n	0.17	6	29	6	29	y	0.07	1	14	1	14	n	0.21	4	15	4	15	y	0.03	1	36	1	36	n	0.00	0	29	0	29	n	0.17	4	19	4	19	y	ENSMUSG00000034083.17	Ccdc174	chr6	protein_coding	coiled-coil domain containing 174
novel_NIR_16589	chr6	92082346	92115968	+	92068723	92115968	A5SS	ENSMUST00000113460.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.07	1	13	1	13	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.60	3	2	3	2	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.75	3	1	3	1	y	0.00	0	1	0	1	n	ENSMUSG00000005893.15	Nr2c2	chr6	protein_coding	nuclear receptor subfamily 2, group C, member 2
novel_NIR_16590	chr6	92082346	92115968	+	92082346	92116761	A3SS	ENSMUST00000113463.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000005893.15	Nr2c2	chr6	protein_coding	nuclear receptor subfamily 2, group C, member 2
novel_NIR_16591	chr6	93169184	93170963	+	93169184	93213633	A3SS	ENSMUST00000181121.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000097462.8	9530026P05Rik	chr6	lncRNA	RIKEN cDNA 9530026P05 gene
novel_NIR_16592	chr6	93169184	93170963	+	93169184	93214955	A3SS	ENSMUST00000204449.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.50	1	1	1	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000097462.8	9530026P05Rik	chr6	lncRNA	RIKEN cDNA 9530026P05 gene
novel_NIR_16593	chr6	94110212	94259991	-	93920301	94259991	A3SS	ENSMUST00000089317.12	novel	0.00	0	21	0	21	n	0.13	2	13	2	13	n	0.00	0	27	0	27	n	0.00	0	35	0	35	n	0.00	0	34	0	34	n	0.00	0	24	0	24	n	0.04	1	25	1	25	n	0.06	1	15	1	15	n	0.17	4	19	4	19	y	0.00	0	34	0	34	n	0.00	0	20	0	20	n	0.00	0	19	0	19	n	ENSMUSG00000045095.17	Magi1	chr6	protein_coding	membrane associated guanylate kinase, WW and PDZ domain containing 1
novel_NIR_16594	chr6	94110212	94259991	-	94110212;94214423	94214341;94259991	ES	ENSMUST00000203034.2	novel	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	1.00	1	0.0	1	0;0	n	0.89	4	0.5	4	0;1	y	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045095.17	Magi1	chr6	protein_coding	membrane associated guanylate kinase, WW and PDZ domain containing 1
novel_NIR_16595	chr6	94487842	94553315	+	94487842	94490786	A3SS&ES	ENSMUST00000204235.3	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045100.12	Slc25a26	chr6	protein_coding	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26
novel_NIR_16596	chr6	94487842	94553315	+	94487842	94511125	A3SS&ES	ENSMUST00000204985.2	novel	0.06	1	17	1	17	n	0.00	0	14	0	14	n	0.00	0	19	0	19	n	0.00	0	22	0	22	n	0.15	4	23	4	23	y	0.00	0	11	0	11	n	0.00	0	38	0	38	n	0.00	0	12	0	12	n	0.05	1	19	1	19	n	0.00	0	40	0	40	n	0.00	0	20	0	20	n	0.00	0	29	0	29	n	ENSMUSG00000045100.12	Slc25a26	chr6	protein_coding	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26
novel_NIR_16597	chr6	94526176	94569393	+	94512749	94569393	A5SS	ENSMUST00000204235.3	novel	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.29	2	5	2	5	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.38	3	5	3	5	y	ENSMUSG00000045100.12	Slc25a26	chr6	protein_coding	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26
novel_NIR_16598	chr6	94526176	94569393	+	94553359	94569393	A5SS&ES	ENSMUST00000061118.11	novel	0.00	0	20	0	20	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.12	2	15	2	15	n	0.00	0	21	0	21	n	0.00	0	4	0	4	n	0.03	1	28	1	28	n	0.09	1	10	1	10	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.00	0	12	0	12	n	0.16	3	16	3	16	y	ENSMUSG00000045100.12	Slc25a26	chr6	protein_coding	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26
novel_NIR_16599	chr6	94526176	94569393	+	94555311	94569393	5pMXE	ENSMUST00000203484.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000045100.12	Slc25a26	chr6	protein_coding	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26
novel_NIR_16600	chr6	94534727	94553315	+	94512749	94553315	A5SS	ENSMUST00000061118.11	novel	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.08	1	12	1	12	n	0.22	2	7	2	7	y	0.00	0	19	0	19	n	0.00	0	7	0	7	n	0.00	0	27	0	27	n	0.00	0	7	0	7	n	0.09	1	10	1	10	n	0.00	0	15	0	15	n	0.00	0	14	0	14	n	0.07	1	13	1	13	n	ENSMUSG00000045100.12	Slc25a26	chr6	protein_coding	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26
novel_NIR_16601	chr6	94534727	94553315	+	94542004	94553315	A5SS&ES	ENSMUST00000205173.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000045100.12	Slc25a26	chr6	protein_coding	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26
novel_NIR_16602	chr6	94553359	94569438	+	94553359	94569393	A3SS	ENSMUST00000061118.11	novel	0.00	0	20	0	20	n	0.00	0	6	0	6	n	0.15	2	11	2	11	y	0.00	0	15	0	15	n	0.00	0	21	0	21	n	0.00	0	4	0	4	n	0.00	0	28	0	28	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	ENSMUSG00000045100.12	Slc25a26	chr6	protein_coding	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26
novel_NIR_16603	chr6	94570057	94575361	+	94570057	94571788	3pMXE	ENSMUST00000204985.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045100.12	Slc25a26	chr6	protein_coding	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26
novel_NIR_16604	chr6	95566071	95632439	-	95566071	95620913	5pMXE	ENSMUST00000203071.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	ENSMUSG00000061838.8	Suclg2	chr6	protein_coding	succinate-Coenzyme A ligase, GDP-forming, beta subunit
novel_NIR_16605	chr6	95632580	95687865	-	95632580	95634375	5pMXE	ENSMUST00000204567.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000061838.8	Suclg2	chr6	protein_coding	succinate-Coenzyme A ligase, GDP-forming, beta subunit
novel_NIR_16606	chr6	95632580	95687865	-	95632580	95669468	5pMXE	ENSMUST00000079847.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000061838.8	Suclg2	chr6	protein_coding	succinate-Coenzyme A ligase, GDP-forming, beta subunit
novel_NIR_16607	chr6	95632580	95688005	-	95632580	95634375	5pMXE	ENSMUST00000204567.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	5	0	5	0	y	ENSMUSG00000061838.8	Suclg2	chr6	protein_coding	succinate-Coenzyme A ligase, GDP-forming, beta subunit
novel_NIR_16608	chr6	95632580	95688005	-	95632580	95669468	5pMXE	ENSMUST00000079847.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	5	0	5	0	y	ENSMUSG00000061838.8	Suclg2	chr6	protein_coding	succinate-Coenzyme A ligase, GDP-forming, beta subunit
novel_NIR_16609	chr6	97180555	97181369	-	97180555	97182064	A5SS	ENSMUST00000204056.2	novel	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.43	3	4	3	4	y	0.75	3	1	3	1	y	0.00	0	2	0	2	n	0.50	3	3	3	3	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.67	2	1	2	1	y	0.17	1	5	1	5	n	0.00	0	2	0	2	n	ENSMUSG00000030061.17	Uba3	chr6	protein_coding	ubiquitin-like modifier activating enzyme 3
novel_NIR_16610	chr6	97180555	97181369	-	97180555	97182494	A5SS	ENSMUST00000164744.8	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.60	3	2	3	2	y	0.43	3	4	3	4	y	0.00	0	2	0	2	n	0.50	3	3	3	3	y	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.50	2	2	2	2	y	0.25	1	3	1	3	n	0.00	0	5	0	5	n	ENSMUSG00000030061.17	Uba3	chr6	protein_coding	ubiquitin-like modifier activating enzyme 3
novel_NIR_16611	chr6	97180555	97181876	-	97180555	97182064	A5SS	ENSMUST00000204056.2	novel	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.33	2	4	2	4	y	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.67	2	1	2	1	y	0.00	0	5	0	5	n	0.33	1	2	1	2	n	ENSMUSG00000030061.17	Uba3	chr6	protein_coding	ubiquitin-like modifier activating enzyme 3
novel_NIR_16612	chr6	97180555	97181876	-	97180555	97182494	A5SS	ENSMUST00000164744.8	novel	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.17	1	5	1	5	n	ENSMUSG00000030061.17	Uba3	chr6	protein_coding	ubiquitin-like modifier activating enzyme 3
novel_NIR_16613	chr6	97287700	97288855	-	97287700	97300616	A5SS	ENSMUST00000113355.9	novel	0.47	7	8	7	8	y	0.38	9	15	9	15	y	0.40	8	12	8	12	y	0.39	9	14	9	14	y	0.47	8	9	8	9	y	0.67	16	8	16	8	y	0.53	10	9	10	9	y	0.39	7	11	7	11	y	0.45	10	12	10	12	y	0.52	11	10	11	10	y	0.32	7	15	7	15	y	0.74	25	9	25	9	y	ENSMUSG00000030064.17	Frmd4b	chr6	protein_coding	FERM domain containing 4B
novel_NIR_16614	chr6	97287700	97289288	-	97287700	97288856	A5SS	ENSMUST00000143698.8	novel	1.00	6	0	6	0	y	1.00	6	0	6	0	y	1.00	5	0	5	0	y	1.00	6	0	6	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	8	0	8	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000030064.17	Frmd4b	chr6	protein_coding	FERM domain containing 4B
novel_NIR_16615	chr6	97287700	97289288	-	97287700	97300616	A5SS	ENSMUST00000113355.9	novel	0.43	6	8	6	8	y	0.29	6	15	6	15	y	0.29	5	12	5	12	y	0.30	6	14	6	14	y	0.18	2	9	2	9	y	0.11	1	8	1	8	n	0.25	3	9	3	9	y	0.00	0	11	0	11	n	0.40	8	12	8	12	y	0.29	4	10	4	10	y	0.12	2	15	2	15	n	0.00	0	9	0	9	n	ENSMUSG00000030064.17	Frmd4b	chr6	protein_coding	FERM domain containing 4B
novel_NIR_16616	chr6	97784248	97830031	+	97784248	97918011	A3SS	ENSMUST00000148233.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000035158.16	Mitf	chr6	protein_coding	melanogenesis associated transcription factor
novel_NIR_16617	chr6	97784248	97830031	+	97784248	97918014	A3SS	ENSMUST00000203884.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.29	2	5	2	5	y	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	ENSMUSG00000035158.16	Mitf	chr6	protein_coding	melanogenesis associated transcription factor
novel_NIR_16618	chr6	98916749	98921580	-	98912401	98921580	A3SS	ENSMUST00000113329.10	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000030067.18	Foxp1	chr6	protein_coding	forkhead box P1
novel_NIR_16619	chr6	98931365	98955094	-	98931365;98943075	98942988;98955094	ES	ENSMUST00000113326.9	novel	0.00	0	4.5	0	4;5	n	0.00	0	4.5	0	5;4	n	0.20	4	16.5	4	19;14	y	0.00	0	10.5	0	12;9	n	0.00	0	9.0	0	8;10	n	0.00	0	17.0	0	21;13	n	0.00	0	15.0	0	11;19	n	0.00	0	13.0	0	18;8	n	0.00	0	12.5	0	11;14	n	0.00	0	15.5	0	15;16	n	0.00	0	10.5	0	12;9	n	0.00	0	16.0	0	12;20	n	ENSMUSG00000030067.18	Foxp1	chr6	protein_coding	forkhead box P1
novel_NIR_16620	chr6	98955198	99412177	-	99285399	99412177	3pMXE	ENSMUST00000176105.2	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.29	2	5	2	5	y	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	12	0	12	n	ENSMUSG00000030067.18	Foxp1	chr6	protein_coding	forkhead box P1
novel_NIR_16621	chr6	99129374	99130588	-	99129374	99139800	A5SS	ENSMUST00000075832.11	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030067.18	Foxp1	chr6	protein_coding	forkhead box P1
novel_NIR_16622	chr6	99139990	99150203	-	99139990	99211755	A5SS	ENSMUST00000138754.9	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	0.50	1	1	1	1	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.75	3	1	3	1	y	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	4	0	4	0	y	ENSMUSG00000030067.18	Foxp1	chr6	protein_coding	forkhead box P1
novel_NIR_16623	chr6	99139990	99150203	-	99139990	99225232	A5SS	ENSMUST00000177208.2	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	1.00	7	0	7	0	y	1.00	1	0	1	0	n	0.60	3	2	3	2	y	1.00	1	0	1	0	n	0.75	3	1	3	1	y	0.83	5	1	5	1	y	0.60	3	2	3	2	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.50	4	4	4	4	y	ENSMUSG00000030067.18	Foxp1	chr6	protein_coding	forkhead box P1
novel_NIR_16624	chr6	99139990	99150203	-	99139990	99237306	A5SS	ENSMUST00000113326.9	novel	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.32	7	15	7	15	y	0.20	1	4	1	4	n	0.23	3	10	3	10	y	0.17	1	5	1	5	n	0.43	3	4	3	4	y	0.56	5	4	5	4	y	0.33	3	6	3	6	y	0.33	1	2	1	2	n	0.33	2	4	2	4	y	0.33	4	8	4	8	y	ENSMUSG00000030067.18	Foxp1	chr6	protein_coding	forkhead box P1
novel_NIR_16625	chr6	99139990	99150461	-	99139990	99211755	A5SS	ENSMUST00000138754.9	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030067.18	Foxp1	chr6	protein_coding	forkhead box P1
novel_NIR_16626	chr6	99139990	99150461	-	99139990	99225232	A5SS	ENSMUST00000177208.2	novel	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000030067.18	Foxp1	chr6	protein_coding	forkhead box P1
novel_NIR_16627	chr6	99139990	99150461	-	99139990	99237306	A5SS	ENSMUST00000113326.9	novel	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	15	0	15	n	0.43	3	4	3	4	y	0.00	0	10	0	10	n	0.29	2	5	2	5	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	ENSMUSG00000030067.18	Foxp1	chr6	protein_coding	forkhead box P1
novel_NIR_16628	chr6	99139990	99230525	-	99139990	99211755	A5SS&ES	ENSMUST00000138754.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030067.18	Foxp1	chr6	protein_coding	forkhead box P1
novel_NIR_16629	chr6	99139990	99230525	-	99139990	99225232	5pMXE	ENSMUST00000177208.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000030067.18	Foxp1	chr6	protein_coding	forkhead box P1
novel_NIR_16630	chr6	99139990	99230525	-	99139990	99237306	A5SS	ENSMUST00000113326.9	novel	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	15	0	15	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.25	2	6	2	6	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	ENSMUSG00000030067.18	Foxp1	chr6	protein_coding	forkhead box P1
novel_NIR_16631	chr6	99225333	99237306	-	99139990	99237306	A3SS	ENSMUST00000113326.9	novel	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.00	0	15	0	15	n	0.33	2	4	2	4	y	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.33	2	4	2	4	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.60	3	2	3	2	y	0.00	0	4	0	4	n	0.20	2	8	2	8	y	ENSMUSG00000030067.18	Foxp1	chr6	protein_coding	forkhead box P1
novel_NIR_16632	chr6	99225333	99237306	-	99211867	99237306	A3SS	ENSMUST00000138754.9	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000030067.18	Foxp1	chr6	protein_coding	forkhead box P1
novel_NIR_16633	chr6	99237380	99412177	-	99237380	99243308	5pMXE	ENSMUST00000113326.9	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000030067.18	Foxp1	chr6	protein_coding	forkhead box P1
novel_NIR_16634	chr6	99237380	99412177	-	99237380;99285399	99285305;99412177	ES	ENSMUST00000113322.9	novel	0.00	0	2.5	0	2;3	n	0.00	0	3.0	0	3;3	n	0.25	2	6.0	2	5;7	y	0.13	1	6.5	1	9;4	n	0.00	0	6.5	0	8;5	n	0.00	0	3.5	0	2;5	n	0.00	0	10.5	0	9;12	n	0.00	0	2.0	0	1;3	n	0.00	0	7.0	0	5;9	n	0.00	0	1.5	0	0;3	n	0.00	0	2.0	0	2;2	n	0.00	0	9.5	0	7;12	n	ENSMUSG00000030067.18	Foxp1	chr6	protein_coding	forkhead box P1
novel_NIR_16635	chr6	99237380	99412177	-	99285399	99412177	3pMXE	ENSMUST00000176105.2	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.22	2	7	2	7	y	0.20	1	4	1	4	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	12	0	12	n	ENSMUSG00000030067.18	Foxp1	chr6	protein_coding	forkhead box P1
novel_NIR_16636	chr6	99376678	99412177	-	99285399	99412177	A3SS	ENSMUST00000113322.9	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.29	2	5	2	5	y	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	12	0	12	n	ENSMUSG00000030067.18	Foxp1	chr6	protein_coding	forkhead box P1
novel_NIR_16637	chr6	99412306	99433420	-	99412306	99413202	5pMXE	ENSMUST00000176105.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030067.18	Foxp1	chr6	protein_coding	forkhead box P1
novel_NIR_16638	chr6	99412306	99433420	-	99412306	99422519	5pMXE	ENSMUST00000176148.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030068.5	Gm20696	chr6	protein_coding	predicted gene 20696
novel_NIR_16639	chr6	99412306	99433420	-	99412306	99497558	A5SS	ENSMUST00000177227.8	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.11	1	8	1	8	n	-	-	-	-	-	-	0.80	4	1	4	1	y	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000030067.18	Foxp1	chr6	protein_coding	forkhead box P1
novel_NIR_16640	chr6	99412306	99433420	-	99412306	99497562	A5SS	ENSMUST00000176565.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030067.18	Foxp1	chr6	protein_coding	forkhead box P1
novel_NIR_16641	chr6	99412306	99433420	-	99412306	99499505	A5SS	ENSMUST00000177235.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030067.18	Foxp1	chr6	protein_coding	forkhead box P1
novel_NIR_16642	chr6	99412306	99433420	-	99412306	99609218	A5SS	ENSMUST00000155466.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030068.5	Gm20696	chr6	protein_coding	predicted gene 20696
novel_NIR_16643	chr6	99491819	99497558	-	99412306	99497558	A3SS	ENSMUST00000177227.8	novel	0.40	2	3	2	3	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000030067.18	Foxp1	chr6	protein_coding	forkhead box P1
novel_NIR_16644	chr7	100271718	100275759	+	100256727	100275759	A5SS	ENSMUST00000107048.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030704.15	Rab6a	chr7	protein_coding	RAB6A, member RAS oncogene family
novel_NIR_16645	chr7	100306017	100307591	-	100306017	100306281	5pMXE	ENSMUST00000139708.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000030701.18	Plekhb1	chr7	protein_coding	pleckstrin homology domain containing, family B (evectins) member 1
novel_NIR_16646	chr7	100306017	100307591	-	100306017	100307510	A5SS	ENSMUST00000138830.2	novel	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.22	2	7	2	7	y	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.14	1	6	1	6	n	0.00	0	3	0	3	n	ENSMUSG00000030701.18	Plekhb1	chr7	protein_coding	pleckstrin homology domain containing, family B (evectins) member 1
novel_NIR_16647	chr7	100306017	100307591	-	100306017	100311126	A5SS	ENSMUST00000107047.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000030701.18	Plekhb1	chr7	protein_coding	pleckstrin homology domain containing, family B (evectins) member 1
novel_NIR_16648	chr7	100462207	100480535	+	100462207	100462575	3pMXE	ENSMUST00000209084.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000029461.18	Fam168a	chr7	protein_coding	family with sequence similarity 168, member A
novel_NIR_16649	chr7	100648307	100651919	-	100648307	100652771	A5SS	ENSMUST00000037540.5	novel	0.15	3	17	3	17	y	0.00	0	25	0	25	n	0.00	0	58	0	58	n	0.00	0	42	0	42	n	0.00	0	39	0	39	n	0.04	1	26	1	26	n	0.00	0	34	0	34	n	0.00	0	27	0	27	n	0.00	0	28	0	28	n	0.03	1	31	1	31	n	0.04	1	23	1	23	n	0.00	0	28	0	28	n	ENSMUSG00000032860.6	P2ry2	chr7	protein_coding	purinergic receptor P2Y, G-protein coupled 2
novel_NIR_16650	chr7	100648307	100651919	-	100648307	100660919	A5SS	ENSMUST00000178340.3	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000032860.6	P2ry2	chr7	protein_coding	purinergic receptor P2Y, G-protein coupled 2
novel_NIR_16651	chr7	100648307	100651919	-	100648307	100661615	A5SS	ENSMUST00000207049.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000032860.6	P2ry2	chr7	protein_coding	purinergic receptor P2Y, G-protein coupled 2
novel_NIR_16652	chr7	100652961	100655712	-	100652961	100660919	A5SS	ENSMUST00000037540.5	novel	0.00	0	29	0	29	n	0.18	3	14	3	14	y	0.14	6	36	6	36	n	0.10	3	28	3	28	n	0.00	0	32	0	32	n	0.00	0	15	0	15	n	0.00	0	35	0	35	n	0.00	0	21	0	21	n	0.00	0	9	0	9	n	0.04	1	25	1	25	n	0.00	0	15	0	15	n	0.00	0	21	0	21	n	ENSMUSG00000032860.6	P2ry2	chr7	protein_coding	purinergic receptor P2Y, G-protein coupled 2
novel_NIR_16653	chr7	100652961	100655712	-	100652961	100661137	A5SS	ENSMUST00000207916.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	0.86	6	1	6	1	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000032860.6	P2ry2	chr7	protein_coding	purinergic receptor P2Y, G-protein coupled 2
novel_NIR_16654	chr7	100655850	100660919	-	100648307	100660919	A3SS	ENSMUST00000178340.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.60	3	2	3	2	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000032860.6	P2ry2	chr7	protein_coding	purinergic receptor P2Y, G-protein coupled 2
novel_NIR_16655	chr7	100655850	100660919	-	100652961	100660919	A3SS	ENSMUST00000037540.5	novel	0.00	0	29	0	29	n	0.00	0	14	0	14	n	0.08	3	36	3	36	n	0.00	0	28	0	28	n	0.03	1	32	1	32	n	0.00	0	15	0	15	n	0.08	3	35	3	35	n	0.00	0	21	0	21	n	0.00	0	9	0	9	n	0.00	0	25	0	25	n	0.17	3	15	3	15	y	0.00	0	21	0	21	n	ENSMUSG00000032860.6	P2ry2	chr7	protein_coding	purinergic receptor P2Y, G-protein coupled 2
novel_NIR_16656	chr7	100893423	100898728	+	100893423	100895509	A3SS&ES	ENSMUST00000032931.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000030691.16	Fchsd2	chr7	protein_coding	FCH and double SH3 domains 2
novel_NIR_16657	chr7	100939452	100939570	-	100939478	100939570	A3SS	ENSMUST00000207740.2	novel	0.00	0	24	0	24	n	0.09	3	31	3	31	n	0.07	4	54	4	54	n	0.07	2	25	2	25	n	0.03	1	34	1	34	n	0.03	2	58	2	58	n	0.00	0	38	0	38	n	0.10	4	38	4	38	n	0.19	6	26	6	26	y	0.08	2	23	2	23	n	0.00	0	21	0	21	n	0.04	2	43	2	43	n	ENSMUSG00000047767.18	Atg16l2	chr7	protein_coding	autophagy related 16-like 2 (S. cerevisiae)
novel_NIR_16658	chr7	100945441	100946016	-	100945441	100945715	A5SS&ES	ENSMUST00000120267.9	novel	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.00	0	33	0	33	n	0.00	0	15	0	15	n	0.21	3	11	3	11	y	0.00	0	28	0	28	n	0.00	0	22	0	22	n	0.00	0	23	0	23	n	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	ENSMUSG00000047767.18	Atg16l2	chr7	protein_coding	autophagy related 16-like 2 (S. cerevisiae)
novel_NIR_16659	chr7	100945441	100946016	-	100945441	100945964	5pMXE	ENSMUST00000140059.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000047767.18	Atg16l2	chr7	protein_coding	autophagy related 16-like 2 (S. cerevisiae)
novel_NIR_16660	chr7	100946440	100947862	-	100946440	100948213	A5SS	ENSMUST00000120267.9	novel	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	34	0	34	n	0.00	0	20	0	20	n	0.00	0	29	0	29	n	0.00	0	26	0	26	n	0.16	4	21	4	21	y	0.00	0	25	0	25	n	0.00	0	13	0	13	n	0.00	0	25	0	25	n	0.00	0	14	0	14	n	0.00	0	24	0	24	n	ENSMUSG00000047767.18	Atg16l2	chr7	protein_coding	autophagy related 16-like 2 (S. cerevisiae)
novel_NIR_16661	chr7	100946440	100947862	-	100946440	100949319	A5SS	ENSMUST00000140553.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.80	4	1	4	1	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000047767.18	Atg16l2	chr7	protein_coding	autophagy related 16-like 2 (S. cerevisiae)
novel_NIR_16662	chr7	100949418	100950710	-	100949418	100951104	A5SS	ENSMUST00000207121.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.67	2	1	2	1	y	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000047767.18	Atg16l2	chr7	protein_coding	autophagy related 16-like 2 (S. cerevisiae)
novel_NIR_16663	chr7	100967033	100970056	-	100967033	100974396	A5SS	ENSMUST00000172644.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000092364.3	Gm20476	chr7	lncRNA	predicted gene 20476
novel_NIR_16664	chr7	100969865	100970457	+	100966434	100970457	A5SS	ENSMUST00000163799.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030688.16	Stard10	chr7	protein_coding	START domain containing 10
novel_NIR_16665	chr7	100970750	100970921	+	100970757	100970921	A5SS	ENSMUST00000210192.2	novel	0.12	2	15	2	15	n	0.18	3	14	3	14	y	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.10	2	19	2	19	n	0.10	1	9	1	9	n	0.26	6	17	6	17	y	0.17	1	5	1	5	n	0.25	2	6	2	6	y	0.38	5	8	5	8	y	0.00	0	5	0	5	n	0.00	0	10	0	10	n	ENSMUSG00000030688.16	Stard10	chr7	protein_coding	START domain containing 10
novel_NIR_16666	chr7	100971240	100992391	+	100991836	100992391	5pMXE	ENSMUST00000174140.2	novel	0.00	0	43	0	43	n	1.00	5	0	5	0	y	0.20	6	24	6	24	y	0.12	4	28	4	28	n	0.20	13	51	13	51	y	0.12	3	21	3	21	n	0.10	6	53	6	53	n	0.00	0	25	0	25	n	0.12	6	43	6	43	n	0.09	6	63	6	63	n	0.19	9	38	9	38	y	1.00	2	0	2	0	y	ENSMUSG00000030688.16	Stard10	chr7	protein_coding	START domain containing 10
novel_NIR_16667	chr7	100973490	100991705	+	100971102	100991705	A5SS	ENSMUST00000174291.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000030688.16	Stard10	chr7	protein_coding	START domain containing 10
novel_NIR_16668	chr7	100973649	100991705	+	100971102	100991705	A5SS	ENSMUST00000174291.8	novel	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030688.16	Stard10	chr7	protein_coding	START domain containing 10
novel_NIR_16669	chr7	100973680	100991705	+	100971102	100991705	A5SS	ENSMUST00000174291.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030688.16	Stard10	chr7	protein_coding	START domain containing 10
novel_NIR_16670	chr7	100985566	100991705	+	100971102	100991705	A5SS	ENSMUST00000174291.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030688.16	Stard10	chr7	protein_coding	START domain containing 10
novel_NIR_16671	chr7	100988931	100991705	+	100971102	100991705	A5SS	ENSMUST00000174291.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030688.16	Stard10	chr7	protein_coding	START domain containing 10
novel_NIR_16672	chr7	100992494	100993095	+	100992494	100994842	A3SS	ENSMUST00000173270.8	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	12	0	12	n	-	-	-	-	-	-	0.17	2	10	2	10	y	ENSMUSG00000030688.16	Stard10	chr7	protein_coding	START domain containing 10
novel_NIR_16673	chr7	100992494	100993125	+	100992494	100994842	A3SS	ENSMUST00000173270.8	novel	0.00	0	4	0	4	n	0.33	2	4	2	4	y	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.08	1	12	1	12	n	-	-	-	-	-	-	0.17	2	10	2	10	y	ENSMUSG00000030688.16	Stard10	chr7	protein_coding	START domain containing 10
novel_NIR_16674	chr7	101027739	101035356	+	101027739;101034823	101034759;101035356	ES	ENSMUST00000084895.12	novel	0.00	0	20.5	0	4;37	n	0.00	0	15.5	0	1;30	n	0.17	6	29.0	6	0;58	y	0.06	2	33.5	2	3;64	n	0.00	0	36.0	0	5;67	n	0.06	1	15.5	1	2;29	n	0.00	0	25.5	0	3;48	n	0.04	1	23.0	1	2;44	n	0.00	0	31.0	0	5;57	n	0.13	4	27.0	4	6;48	n	0.09	2	21.5	2	0;43	n	0.00	0	34.5	0	7;62	n	ENSMUSG00000032812.19	Arap1	chr7	protein_coding	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
novel_NIR_16675	chr7	101028707	101034069	+	101022708	101034069	A5SS	ENSMUST00000107010.9	novel	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	32	0	32	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.00	0	28	0	28	n	0.15	2	11	2	11	y	0.00	0	21	0	21	n	0.00	0	3	0	3	n	0.00	0	18	0	18	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	ENSMUSG00000032812.19	Arap1	chr7	protein_coding	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
novel_NIR_16676	chr7	101028707	101034069	+	101032163	101034069	5pMXE	ENSMUST00000152082.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032812.19	Arap1	chr7	protein_coding	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
novel_NIR_16677	chr7	101028707	101034069	+	101032191	101034069	5pMXE	ENSMUST00000141083.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032812.19	Arap1	chr7	protein_coding	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
novel_NIR_16678	chr7	101028707	101034069	+	101033313	101034069	5pMXE	ENSMUST00000148902.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032812.19	Arap1	chr7	protein_coding	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
novel_NIR_16679	chr7	101053626	101057254	+	101054172	101057254	A5SS&ES	ENSMUST00000084896.10	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.67	2	1	2	1	y	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.00	0	6	0	6	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032812.19	Arap1	chr7	protein_coding	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
novel_NIR_16680	chr7	101153070	101153202	+	101153070	101153179	A3SS	ENSMUST00000084894.15	novel	0.22	2	7	2	7	y	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.09	1	10	1	10	n	0.08	1	11	1	11	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	ENSMUSG00000030653.18	Gm45837	chr7	protein_coding	predicted gene 45837
novel_NIR_16681	chr7	101486158	101486367	-	101486158	101486872	A5SS	ENSMUST00000185929.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	ENSMUSG00000032737.14	Inppl1	chr7	protein_coding	inositol polyphosphate phosphatase-like 1
novel_NIR_16682	chr7	101486158	101486367	-	101486158	101486928	A5SS	ENSMUST00000165052.8	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.25	3	9	3	9	y	0.00	0	5	0	5	n	0.50	3	3	3	3	y	0.00	0	10	0	10	n	0.29	2	5	2	5	y	0.20	2	8	2	8	y	0.24	5	16	5	16	y	0.33	3	6	3	6	y	0.17	2	10	2	10	y	ENSMUSG00000032737.14	Inppl1	chr7	protein_coding	inositol polyphosphate phosphatase-like 1
novel_NIR_16683	chr7	101486158	101486367	-	101486158	101487096	A5SS	ENSMUST00000035836.14	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.75	3	1	3	1	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	0.67	2	1	2	1	y	0.71	5	2	5	2	y	1.00	3	0	3	0	y	0.33	2	4	2	4	y	ENSMUSG00000032737.14	Inppl1	chr7	protein_coding	inositol polyphosphate phosphatase-like 1
novel_NIR_16684	chr7	101486158	101487524	-	101486158	101486872	5pMXE	ENSMUST00000185929.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000032737.14	Inppl1	chr7	protein_coding	inositol polyphosphate phosphatase-like 1
novel_NIR_16685	chr7	101486158	101487524	-	101486158	101486928	5pMXE	ENSMUST00000165052.8	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	16	0	16	n	0.25	2	6	2	6	y	0.00	0	10	0	10	n	ENSMUSG00000032737.14	Inppl1	chr7	protein_coding	inositol polyphosphate phosphatase-like 1
novel_NIR_16686	chr7	101486158	101487524	-	101486158	101487096	5pMXE	ENSMUST00000035836.14	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	4	0	4	n	ENSMUSG00000032737.14	Inppl1	chr7	protein_coding	inositol polyphosphate phosphatase-like 1
novel_NIR_16687	chr7	101488226	101496488	+	101488226	101491177	3pMXE	ENSMUST00000211793.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	y	ENSMUSG00000073985.3	Gm10602	chr7	lncRNA	predicted gene 10602
novel_NIR_16688	chr7	101520878	101530551	+	101520878	101521804	A3SS&ES	ENSMUST00000210984.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030649.19	Anapc15	chr7	protein_coding	anaphase promoting complex C subunit 15
novel_NIR_16689	chr7	101528508	101530592	+	101528508	101546940	A3SS	ENSMUST00000210984.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030649.19	Anapc15	chr7	protein_coding	anaphase promoting complex C subunit 15
novel_NIR_16690	chr7	101530609	101533597	+	101530609	101546940	A3SS	ENSMUST00000106978.8	novel	0.00	0	16	0	16	n	0.17	1	5	1	5	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.25	3	9	3	9	y	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	ENSMUSG00000030649.19	Anapc15	chr7	protein_coding	anaphase promoting complex C subunit 15
novel_NIR_16691	chr7	101546150	101546940	+	101513036	101546940	A5SS	ENSMUST00000209334.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030649.19	Anapc15	chr7	protein_coding	anaphase promoting complex C subunit 15
novel_NIR_16692	chr7	101546150	101546940	+	101528508	101546940	A5SS	ENSMUST00000210984.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030649.19	Anapc15	chr7	protein_coding	anaphase promoting complex C subunit 15
novel_NIR_16693	chr7	101546150	101546940	+	101530609	101546940	A5SS	ENSMUST00000106978.8	novel	0.00	0	16	0	16	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.25	2	6	2	6	y	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	ENSMUSG00000030649.19	Anapc15	chr7	protein_coding	anaphase promoting complex C subunit 15
novel_NIR_16694	chr7	101546150	101546940	+	101545457	101546940	A5SS	ENSMUST00000131269.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030649.19	Anapc15	chr7	protein_coding	anaphase promoting complex C subunit 15
novel_NIR_16695	chr7	101546150	101546940	+	101545657	101546940	A5SS	ENSMUST00000035395.14	novel	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.25	2	6	2	6	y	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	ENSMUSG00000030649.19	Anapc15	chr7	protein_coding	anaphase promoting complex C subunit 15
novel_NIR_16696	chr7	101546150	101546940	+	101546150;101546567	101546396;101546940	ES	ENSMUST00000150018.2	novel	0.00	0	2.0	0	0;4	n	0.00	0	4.5	0	2;7	n	0.00	0	1.5	0	0;3	n	0.44	2	2.5	2	0;5	y	0.00	0	1.5	0	0;3	n	0.00	0	1.5	0	0;3	n	0.00	0	2.5	0	1;4	n	0.00	0	1.0	0	0;2	n	0.00	0	0.5	0	0;1	n	0.00	0	2.0	0	0;4	n	0.00	0	1.0	0	0;2	n	0.00	0	2.0	0	0;4	n	ENSMUSG00000030649.19	Anapc15	chr7	protein_coding	anaphase promoting complex C subunit 15
novel_NIR_16697	chr7	101546150	101546940	+	101546567	101546940	5pMXE	ENSMUST00000143835.8	novel	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000030649.19	Anapc15	chr7	protein_coding	anaphase promoting complex C subunit 15
novel_NIR_16698	chr7	101546253	101546396	+	101546150	101546396	A5SS	ENSMUST00000150018.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030649.19	Anapc15	chr7	protein_coding	anaphase promoting complex C subunit 15
novel_NIR_16699	chr7	101546994	101547149	+	101545657	101547149	A5SS	ENSMUST00000106973.8	novel	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	0.00	0	2	0	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	4	2	4	2	y	1.00	3	0	3	0	y	0.67	2	1	2	1	y	ENSMUSG00000030649.19	Anapc15	chr7	protein_coding	anaphase promoting complex C subunit 15
novel_NIR_16700	chr7	101546994	101547149	+	101546994	101547154	A3SS	ENSMUST00000035395.14	novel	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	ENSMUSG00000030649.19	Anapc15	chr7	protein_coding	anaphase promoting complex C subunit 15
novel_NIR_16701	chr7	101548244	101548389	+	101548244	101550139	A3SS	ENSMUST00000098237.9	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030649.19	Anapc15	chr7	protein_coding	anaphase promoting complex C subunit 15
novel_NIR_16702	chr7	101559753	101559985	+	101559753	101575636	A3SS	ENSMUST00000193465.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030842.13	Lamtor1	chr7	protein_coding	late endosomal/lysosomal adaptor, MAPK and MTOR activator 1
novel_NIR_16703	chr7	101559753	101560488	+	101559753	101575636	A3SS	ENSMUST00000193465.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	12	0	12	0	y	-	-	-	-	-	-	ENSMUSG00000030842.13	Lamtor1	chr7	protein_coding	late endosomal/lysosomal adaptor, MAPK and MTOR activator 1
novel_NIR_16704	chr7	101626657	101631022	+	101626657	101636933	A3SS	ENSMUST00000209639.2	novel	0.12	3	23	3	23	n	0.20	1	4	1	4	n	0.00	0	26	0	26	n	0.00	0	19	0	19	n	0.12	4	30	4	30	n	0.00	0	12	0	12	n	0.00	0	26	0	26	n	0.00	0	17	0	17	n	0.23	3	10	3	10	y	0.08	2	23	2	23	n	0.00	0	12	0	12	n	0.06	2	33	2	33	n	ENSMUSG00000066306.14	Numa1	chr7	protein_coding	nuclear mitotic apparatus protein 1
novel_NIR_16705	chr7	101691871	101708908	-	101691871	101708300	A5SS	ENSMUST00000106953.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000070426.13	Rnf121	chr7	protein_coding	ring finger protein 121
novel_NIR_16706	chr7	101691871	101708908	-	101691871	101713984	A5SS	ENSMUST00000130074.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000070426.13	Rnf121	chr7	protein_coding	ring finger protein 121
novel_NIR_16707	chr7	101691871	101708908	-	101691871	101714474	A5SS	ENSMUST00000089052.11	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.33	1	2	1	2	n	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	ENSMUSG00000070426.13	Rnf121	chr7	protein_coding	ring finger protein 121
novel_NIR_16708	chr7	101715011	101719033	+	101715011	101715667	A3SS&ES	ENSMUST00000141646.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000099481.7	Xndc1	chr7	protein_coding	Xrcc1 N-terminal domain containing 1
novel_NIR_16709	chr7	101715011	101719033	+	101715011	101719104	A3SS	ENSMUST00000153176.8	novel	0.00	0	6	0	6	n	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.09	1	10	1	10	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000099481.7	Xndc1	chr7	protein_coding	Xrcc1 N-terminal domain containing 1
novel_NIR_16710	chr7	101715011	101719033	+	101715011	101720394	A3SS	ENSMUST00000106950.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000099481.7	Xndc1	chr7	protein_coding	Xrcc1 N-terminal domain containing 1
novel_NIR_16711	chr7	101715011	101719033	+	101715011	101720426	A3SS	ENSMUST00000123372.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000070425.14	Xntrpc	chr7	protein_coding	Xndc1-transient receptor potential cation channel, subfamily C, member 2 readthrough
novel_NIR_16712	chr7	101715149	101720426	+	101715011	101720426	A5SS	ENSMUST00000123372.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000070425.14	Xntrpc	chr7	protein_coding	Xndc1-transient receptor potential cation channel, subfamily C, member 2 readthrough
novel_NIR_16713	chr7	101715149	101720426	+	101715149	101719104	A3SS&ES	ENSMUST00000146450.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000099481.7	Xndc1	chr7	protein_coding	Xrcc1 N-terminal domain containing 1
novel_NIR_16714	chr7	101715149	101720426	+	101715149	101720394	A3SS	ENSMUST00000084843.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000070425.14	Xntrpc	chr7	protein_coding	Xndc1-transient receptor potential cation channel, subfamily C, member 2 readthrough
novel_NIR_16715	chr7	101715149	101720426	+	101719198	101720426	A5SS&ES	ENSMUST00000153176.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000099481.7	Xndc1	chr7	protein_coding	Xrcc1 N-terminal domain containing 1
novel_NIR_16716	chr7	101722523	101725030	+	101722523	101725004	A3SS	ENSMUST00000106950.8	novel	0.00	0	10	0	10	n	0.50	3	3	3	3	y	0.00	0	6	0	6	n	0.29	2	5	2	5	y	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000099481.7	Xndc1	chr7	protein_coding	Xrcc1 N-terminal domain containing 1
novel_NIR_16717	chr7	101728025	101729736	+	101728025;101728384	101728212;101729736	ES	ENSMUST00000106950.8	novel	0.00	0	5.5	0	6;5	n	0.00	0	9.0	0	12;6	n	0.00	0	4.5	0	6;3	n	0.00	0	6.5	0	6;7	n	0.00	0	12.0	0	13;11	n	0.00	0	3.5	0	2;5	n	0.21	2	7.5	2	9;6	y	0.00	0	5.5	0	4;7	n	0.00	0	6.0	0	7;5	n	0.00	0	4.0	0	3;5	n	0.00	0	2.0	0	1;3	n	0.00	0	3.0	0	4;2	n	ENSMUSG00000099481.7	Xndc1	chr7	protein_coding	Xrcc1 N-terminal domain containing 1
novel_NIR_16718	chr7	101728025	101729736	+	101728384	101729736	A5SS&ES	ENSMUST00000142629.8	novel	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.25	2	6	2	6	y	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000099481.7	Xndc1	chr7	protein_coding	Xrcc1 N-terminal domain containing 1
novel_NIR_16719	chr7	101747141	101747398	-	101747141	101747436	A5SS	ENSMUST00000106934.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000070424.13	Art5	chr7	protein_coding	ADP-ribosyltransferase 5
novel_NIR_16720	chr7	101756323	101756546	+	101755572	101756546	A5SS	ENSMUST00000210211.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.78	7	2	7	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030996.9	Art1	chr7	protein_coding	ADP-ribosyltransferase 1
novel_NIR_16721	chr7	101813029	101825520	-	101813020	101825520	A3SS	ENSMUST00000211764.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000063550.9	Nup98	chr7	protein_coding	nucleoporin 98
novel_NIR_16722	chr7	101825612	101829659	-	101825612	101829584	A5SS	ENSMUST00000210682.2	novel	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.20	1	4	1	4	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.10	1	9	1	9	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000063550.9	Nup98	chr7	protein_coding	nucleoporin 98
novel_NIR_16723	chr7	101859798	101885655	+	101859798	101870090	3pMXE	ENSMUST00000146394.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.67	4	2	4	2	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000030990.19	Pgap2	chr7	protein_coding	post-GPI attachment to proteins 2
novel_NIR_16724	chr7	101859798	101885655	+	101859798	101872586	A3SS&ES	ENSMUST00000127804.8	novel	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.17	1	5	1	5	n	0.00	0	19	0	19	n	0.00	0	9	0	9	n	0.24	4	13	4	13	y	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	ENSMUSG00000030990.19	Pgap2	chr7	protein_coding	post-GPI attachment to proteins 2
novel_NIR_16725	chr7	101859798	101885655	+	101859798	101875478	3pMXE	ENSMUST00000140631.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.80	4	1	4	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030990.19	Pgap2	chr7	protein_coding	post-GPI attachment to proteins 2
novel_NIR_16726	chr7	101870338	101871989	+	101871692	101871989	5pMXE	ENSMUST00000143541.8	novel	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000030990.19	Pgap2	chr7	protein_coding	post-GPI attachment to proteins 2
novel_NIR_16727	chr7	101875652	101880473	+	101875652	101884869	A3SS	ENSMUST00000145352.8	novel	0.00	0	6	0	6	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.67	6	3	6	3	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.25	2	6	2	6	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000030990.19	Pgap2	chr7	protein_coding	post-GPI attachment to proteins 2
novel_NIR_16728	chr7	101875652	101880473	+	101875652	101885655	A3SS	ENSMUST00000129340.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000030990.19	Pgap2	chr7	protein_coding	post-GPI attachment to proteins 2
novel_NIR_16729	chr7	101875652	101880473	+	101879395	101880473	5pMXE	ENSMUST00000120119.9	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000030990.19	Pgap2	chr7	protein_coding	post-GPI attachment to proteins 2
novel_NIR_16730	chr7	101876912	101880473	+	101879395	101880473	5pMXE	ENSMUST00000120119.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000030990.19	Pgap2	chr7	protein_coding	post-GPI attachment to proteins 2
novel_NIR_16731	chr7	101880632	101885655	+	101872697	101885655	A5SS	ENSMUST00000133311.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000030990.19	Pgap2	chr7	protein_coding	post-GPI attachment to proteins 2
novel_NIR_16732	chr7	101880632	101885655	+	101875652	101885655	A5SS	ENSMUST00000129340.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000030990.19	Pgap2	chr7	protein_coding	post-GPI attachment to proteins 2
novel_NIR_16733	chr7	102328903	102329045	-	102328903	102329344	A5SS	ENSMUST00000082175.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000073968.5	Trim68	chr7	protein_coding	tripartite motif-containing 68
novel_NIR_16734	chr7	103463049	103476991	-	103476877	103476991	3pMXE	ENSMUST00000153218.2	novel	0.20	2	8	2	8	y	0.38	11	18	11	18	y	0.33	5	10	5	10	y	0.07	1	14	1	14	n	0.08	7	78	7	78	n	0.55	11	9	11	9	y	0.15	9	53	9	53	y	0.62	5	3	5	3	y	0.42	8	11	8	11	y	0.48	14	15	14	15	y	0.34	10	19	10	19	y	0.29	12	29	12	29	y	ENSMUSG00000052305.7	Hbb-bs	chr7	protein_coding	hemoglobin, beta adult s chain
novel_NIR_16735	chr7	103928995	103937288	-	103928995	103937178	A5SS	ENSMUST00000098179.9	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000060441.16	Trim5	chr7	protein_coding	tripartite motif-containing 5
novel_NIR_16736	chr7	103956594	103963705	-	103956594	103963692	A5SS	ENSMUST00000126145.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000066258.14	Trim12a	chr7	protein_coding	tripartite motif-containing 12A
novel_NIR_16737	chr7	103956594	103963705	-	103956594	103964508	A5SS	ENSMUST00000070943.7	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	ENSMUSG00000066258.14	Trim12a	chr7	protein_coding	tripartite motif-containing 12A
novel_NIR_16738	chr7	103956594;103963849	103963705;103964618	-	103956594	103964618	cassetteExon	ENSMUST00000106837.8	novel	0.00	0.0	2	0;0	2	n	0.00	0.0	2	0;0	2	n	0.00	0.0	5	0;0	5	n	0.33	0.5	1	0;1	1	n	0.00	0.0	4	0;0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0.0	2	0;0	2	n	-	-	-	-	-	-	0.20	0.5	2	0;1	2	n	1.00	0.5	0	0;1	0	n	0.67	2.0	1	2;2	1	y	ENSMUSG00000066258.14	Trim12a	chr7	protein_coding	tripartite motif-containing 12A
novel_NIR_16739	chr7	103963849	103964618	-	103963849	103964508	5pMXE	ENSMUST00000126145.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000066258.14	Trim12a	chr7	protein_coding	tripartite motif-containing 12A
novel_NIR_16740	chr7	103990575	103990826	-	103990580	103990826	A3SS	ENSMUST00000059037.15	novel	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.11	1	8	1	8	n	0.03	1	29	1	29	n	0.05	1	20	1	20	n	0.00	0	4	0	4	n	0.10	2	19	2	19	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.05	1	20	1	20	n	0.11	2	16	2	16	n	0.21	4	15	4	15	y	ENSMUSG00000057143.16	Trim12c	chr7	protein_coding	tripartite motif-containing 12C
novel_NIR_16741	chr7	104039900	104049899	-	104039821	104049899	A3SS	ENSMUST00000106828.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000078616.3	Trim30c	chr7	protein_coding	tripartite motif-containing 30C
novel_NIR_16742	chr7	104061522	104070378	-	104061522	104066030	5pMXE	ENSMUST00000125762.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000030921.18	Trim30a	chr7	protein_coding	tripartite motif-containing 30A
novel_NIR_16743	chr7	104061522	104070378	-	104061522	104070642	A5SS	ENSMUST00000076922.6	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	ENSMUSG00000030921.18	Trim30a	chr7	protein_coding	tripartite motif-containing 30A
novel_NIR_16744	chr7	104061522	104078328	-	104061522	104066030	5pMXE	ENSMUST00000125762.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.67	2	1	2	1	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030921.18	Trim30a	chr7	protein_coding	tripartite motif-containing 30A
novel_NIR_16745	chr7	104061522	104078328	-	104061522;104070664	104070642;104078328	ES	ENSMUST00000076922.6	novel	0.22	1	3.5	1	2;5	n	0.00	0	2.5	0	2;3	n	0.29	2	5.0	2	5;5	y	0.29	3	7.5	3	6;9	y	0.00	0	4.5	0	4;5	n	0.00	0	3.5	0	4;3	n	1.00	2	0.0	2	0;0	y	0.00	0	3.5	0	2;5	n	0.80	2	0.5	2	0;1	y	0.33	2	4.0	2	2;6	y	0.00	0	1.5	0	3;0	n	0.00	0	3.5	0	2;5	n	ENSMUSG00000030921.18	Trim30a	chr7	protein_coding	tripartite motif-containing 30A
novel_NIR_16746	chr7	104085252	104095111	-	104085252	104114217	A5SS	ENSMUST00000076922.6	novel	-	-	-	-	-	-	0.33	1	2	1	2	n	0.14	1	6	1	6	n	0.40	2	3	2	3	y	0.00	0	11	0	11	n	1.00	1	0	1	0	n	0.20	1	4	1	4	n	0.50	1	1	1	1	n	0.20	1	4	1	4	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	ENSMUSG00000030921.18	Trim30a	chr7	protein_coding	tripartite motif-containing 30A
novel_NIR_16747	chr7	105040874	105048855	-	105039559	105048855	A3SS	ENSMUST00000210341.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000044465.20	Fam160a2	chr7	protein_coding	family with sequence similarity 160, member A2
novel_NIR_16748	chr7	105040874	105048855	-	105040874	105049091	A5SS	ENSMUST00000122327.7	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000044465.20	Fam160a2	chr7	protein_coding	family with sequence similarity 160, member A2
novel_NIR_16749	chr7	105268053	105268375	-	105268053	105268266	A5SS	ENSMUST00000106791.8	novel	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.00	0	53	0	53	n	0.14	2	12	2	12	n	0.00	0	30	0	30	n	0.00	0	22	0	22	n	0.17	3	15	3	15	y	0.00	0	27	0	27	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.06	1	15	1	15	n	0.00	0	20	0	20	n	ENSMUSG00000036989.17	Trim3	chr7	protein_coding	tripartite motif-containing 3
novel_NIR_16750	chr7	105274778	105286018	-	105274778	105282399	5pMXE	ENSMUST00000147044.4	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	4	2	4	2	y	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036989.17	Trim3	chr7	protein_coding	tripartite motif-containing 3
novel_NIR_16751	chr7	105274778	105286018	-	105274778	105282584	5pMXE	ENSMUST00000106791.8	novel	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.12	4	29	4	29	n	0.00	0	7	0	7	n	0.04	1	23	1	23	n	0.00	0	14	0	14	n	0.18	2	9	2	9	y	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	ENSMUSG00000036989.17	Trim3	chr7	protein_coding	tripartite motif-containing 3
novel_NIR_16752	chr7	105274778	105286018	-	105274778	105282610	5pMXE	ENSMUST00000057525.14	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.13	4	26	4	26	n	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.00	0	16	0	16	n	1.00	2	0	2	0	y	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000036989.17	Trim3	chr7	protein_coding	tripartite motif-containing 3
novel_NIR_16753	chr7	105286932	105287026	-	105286932	105287070	A5SS	ENSMUST00000126589.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000030881.16	Arfip2	chr7	protein_coding	ADP-ribosylation factor interacting protein 2
novel_NIR_16754	chr7	105287509	105288216	-	105287551	105288216	A3SS	ENSMUST00000033171.15	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030881.16	Arfip2	chr7	protein_coding	ADP-ribosylation factor interacting protein 2
novel_NIR_16755	chr7	105306491	105308115	+	105306491	105308118	A3SS	ENSMUST00000142363.8	novel	-	-	-	-	-	-	0.33	2	4	2	4	y	0.22	2	7	2	7	y	0.50	1	1	1	1	n	0.60	3	2	3	2	y	0.50	3	3	3	3	y	1.00	2	0	2	0	y	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.25	3	9	3	9	y	0.40	2	3	2	3	y	0.43	6	8	6	8	y	ENSMUSG00000110234.3	Gm45799	chr7	protein_coding	predicted gene 45799
novel_NIR_16756	chr7	105306491	105308115	+	105306491	105317653	A3SS	ENSMUST00000142874.9	novel	0.00	0	4	0	4	n	0.67	2	1	2	1	y	0.17	2	10	2	10	y	1.00	1	0	1	0	n	0.50	3	3	3	3	y	0.33	3	6	3	6	y	0.40	2	3	2	3	y	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.50	3	3	3	3	y	0.50	2	2	2	2	y	0.55	6	5	6	5	y	ENSMUSG00000110234.3	Gm45799	chr7	protein_coding	predicted gene 45799
novel_NIR_16757	chr7	105323142	105323358	+	105323251	105323358	A5SS	ENSMUST00000142874.9	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000110234.3	Gm45799	chr7	protein_coding	predicted gene 45799
novel_NIR_16758	chr7	105335051	105335701	+	105335051;105335346	105335148;105335701	ES	ENSMUST00000145988.9	novel	1.00	1	0.0	1	0;0	n	0.00	0	0.5	0	0;1	n	0.57	2	1.5	2	2;1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030882.20	Dnhd1	chr7	protein_coding	dynein heavy chain domain 1
novel_NIR_16759	chr7	105363787	105364001	+	105363790	105364001	A5SS	ENSMUST00000145988.9	novel	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	11	0	11	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030882.20	Dnhd1	chr7	protein_coding	dynein heavy chain domain 1
novel_NIR_16760	chr7	105369170	105369667	+	105369170;105369468	105369319;105369667	ES	ENSMUST00000145988.9	novel	0.00	0	1.0	0	0;2	n	0.00	0	0.5	0	1;0	n	0.32	3	6.5	3	5;8	y	0.00	0	0.5	0	1;0	n	0.00	0	4.5	0	4;5	n	0.00	0	4.5	0	5;4	n	0.50	1	1.0	1	0;2	n	0.00	0	4.0	0	5;3	n	0.00	0	1.0	0	0;2	n	0.00	0	0.5	0	1;0	n	0.00	0	1.5	0	2;1	n	0.00	0	3.0	0	3;3	n	ENSMUSG00000030882.20	Dnhd1	chr7	protein_coding	dynein heavy chain domain 1
novel_NIR_16761	chr7	107194586	107236424	+	107194586	107236421	A3SS	ENSMUST00000207852.2	novel	0.08	1	12	1	12	n	0.00	0	6	0	6	n	0.05	1	21	1	21	n	0.08	1	12	1	12	n	0.03	1	37	1	37	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.13	2	13	2	13	n	0.06	1	17	1	17	n	0.04	1	25	1	25	n	0.29	4	10	4	10	y	0.14	2	12	2	12	n	ENSMUSG00000036528.17	Ppfibp2	chr7	protein_coding	PTPRF interacting protein, binding protein 2 (liprin beta 2)
novel_NIR_16762	chr7	107236517	107280969	+	107264657	107280969	5pMXE	ENSMUST00000239294.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036528.17	Ppfibp2	chr7	protein_coding	PTPRF interacting protein, binding protein 2 (liprin beta 2)
novel_NIR_16763	chr7	109156668	109201762	-	109156668	109215505	A5SS	ENSMUST00000208981.2	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031024.14	Denn2b	chr7	protein_coding	DENN domain containing 2B
novel_NIR_16764	chr7	109156668	109201762	-	109156668;109169318	109169214;109201762	ES	ENSMUST00000208583.2	novel	0.16	2	10.5	2	13;8	y	0.13	1	6.5	1	10;3	n	0.04	2	51.0	2	53;49	n	0.00	0	15.0	0	11;19	n	0.00	0	40.0	0	49;31	n	0.00	0	40.0	0	33;47	n	0.00	0	17.5	0	16;19	n	0.00	0	25.5	0	27;24	n	0.00	0	10.0	0	12;8	n	0.00	0	41.5	0	44;39	n	0.00	0	16.0	0	23;9	n	0.00	0	20.5	0	16;25	n	ENSMUSG00000031024.14	Denn2b	chr7	protein_coding	DENN domain containing 2B
novel_NIR_16765	chr7	109327330	109336026	-	109327330	109330893	5pMXE	ENSMUST00000035372.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	17	0	17	0	y	ENSMUSG00000035951.3	Ascl3	chr7	protein_coding	achaete-scute family bHLH transcription factor 3
novel_NIR_16766	chr7	109582843	109585169	-	109580324	109585169	A3SS	ENSMUST00000154831.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000047554.15	Tmem41b	chr7	protein_coding	transmembrane protein 41B
novel_NIR_16767	chr7	109722664	109723663	+	109722132	109723663	A5SS	ENSMUST00000033326.10	novel	0.38	3	5	3	5	y	0.00	0	10	0	10	n	-	-	-	-	-	-	0.00	0	17	0	17	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	ENSMUSG00000031016.10	Wee1	chr7	protein_coding	WEE 1 homolog 1 (S. pombe)
novel_NIR_16768	chr7	109726029	109733962	+	109726029;109730182	109730036;109733962	ES	ENSMUST00000033326.10	novel	0.14	1	6.0	1	9;3	n	0.00	0	5.0	0	8;2	n	0.00	0	3.5	0	3;4	n	0.11	1	8.5	1	6;11	n	0.00	0	5.0	0	3;7	n	0.00	0	1.0	0	0;2	n	0.00	0	3.5	0	3;4	n	0.00	0	1.5	0	0;3	n	0.00	0	6.5	0	6;7	n	0.10	3	27.5	3	27;28	n	0.00	0	12.0	0	12;12	n	0.23	3	10.0	3	10;10	y	ENSMUSG00000031016.10	Wee1	chr7	protein_coding	WEE 1 homolog 1 (S. pombe)
novel_NIR_16769	chr7	110198898	110213914	-	110088565	110213914	A3SS	ENSMUST00000167652.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038371.16	Sbf2	chr7	protein_coding	SET binding factor 2
novel_NIR_16770	chr7	110198898	110213914	-	110159550	110213914	A3SS	ENSMUST00000167880.8	novel	1.00	1	0	1	0	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038371.16	Sbf2	chr7	protein_coding	SET binding factor 2
novel_NIR_16771	chr7	110198898	110213914	-	110159553	110213914	A3SS	ENSMUST00000164759.8	novel	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.29	2	5	2	5	y	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.08	1	12	1	12	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	ENSMUSG00000038371.16	Sbf2	chr7	protein_coding	SET binding factor 2
novel_NIR_16772	chr7	110428613	110432944	-	110430168	110432944	3pMXE	ENSMUST00000176716.3	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000030788.17	Rnf141	chr7	protein_coding	ring finger protein 141
novel_NIR_16773	chr7	110436477	110439629	-	110436477	110436616	5pMXE	ENSMUST00000175981.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030788.17	Rnf141	chr7	protein_coding	ring finger protein 141
novel_NIR_16774	chr7	110436477	110439629	-	110436477	110443006	A5SS	ENSMUST00000106682.10	novel	0.00	0	6	0	6	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000030788.17	Rnf141	chr7	protein_coding	ring finger protein 141
novel_NIR_16775	chr7	110436477	110439629	-	110436477	110443224	A5SS	ENSMUST00000177520.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.25	2	6	2	6	y	0.00	0	5	0	5	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000030788.17	Rnf141	chr7	protein_coding	ring finger protein 141
novel_NIR_16776	chr7	110674919	110676145	-	110674919	110675156	5pMXE	ENSMUST00000161790.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000005610.18	Eif4g2	chr7	protein_coding	eukaryotic translation initiation factor 4, gamma 2
novel_NIR_16777	chr7	110680840	110681630	-	110680840	110681235	5pMXE	ENSMUST00000159305.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.83	5	1	5	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000005610.18	Eif4g2	chr7	protein_coding	eukaryotic translation initiation factor 4, gamma 2
novel_NIR_16778	chr7	111622953	111652428	+	111622953	111646134	A3SS&ES	ENSMUST00000211791.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.36	4	7	4	7	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	22	0	22	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000059263.10	Usp47	chr7	protein_coding	ubiquitin specific peptidase 47
novel_NIR_16779	chr7	111966034	111967487	+	111964350	111967487	A5SS	ENSMUST00000215412.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000038244.15	Mical2	chr7	protein_coding	microtubule associated monooxygenase, calponin and LIM domain containing 2
novel_NIR_16780	chr7	112114522	112143384	+	112100476	112143384	A5SS	ENSMUST00000139720.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030770.16	Parva	chr7	protein_coding	parvin, alpha
novel_NIR_16781	chr7	112114522	112143384	+	112119035	112143384	5pMXE	ENSMUST00000106640.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030770.16	Parva	chr7	protein_coding	parvin, alpha
novel_NIR_16782	chr7	112126259	112129143	-	112126259	112129132	A5SS	ENSMUST00000154848.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.22	2	7	2	7	y	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000085049.2	Parvaos	chr7	lncRNA	parvin, alpha, opposite strand
novel_NIR_16783	chr7	112278933	112302716	+	112278933	112358591	A3SS	ENSMUST00000084705.13	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.11	1	8	1	8	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.14	1	6	1	6	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000055320.19	Tead1	chr7	protein_coding	TEA domain family member 1
novel_NIR_16784	chr7	112341397	112358591	+	112278933	112358591	A5SS	ENSMUST00000084705.13	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	6	0	6	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000055320.19	Tead1	chr7	protein_coding	TEA domain family member 1
novel_NIR_16785	chr7	112341397	112358591	+	112293022	112358591	A5SS	ENSMUST00000171373.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000055320.19	Tead1	chr7	protein_coding	TEA domain family member 1
novel_NIR_16786	chr7	112341397	112358591	+	112341336	112358591	A5SS	ENSMUST00000164363.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000055320.19	Tead1	chr7	protein_coding	TEA domain family member 1
novel_NIR_16787	chr7	112894800	112898397	+	112894800	112898394	A3SS	ENSMUST00000047321.9	novel	0.14	1	6	1	6	n	-	-	-	-	-	-	0.33	13	26	13	26	y	0.00	0	4	0	4	n	0.35	7	13	7	13	y	0.38	10	16	10	16	y	0.27	4	11	4	11	y	0.00	0	9	0	9	n	0.33	2	4	2	4	y	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.33	2	4	2	4	y	ENSMUSG00000055116.9	Arntl	chr7	protein_coding	aryl hydrocarbon receptor nuclear translocator-like
novel_NIR_16788	chr7	112934725	112964112	-	112934725	112946239	5pMXE	ENSMUST00000117577.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000038187.15	Btbd10	chr7	protein_coding	BTB (POZ) domain containing 10
novel_NIR_16789	chr7	112934725	112964112	-	112934725	112950988	5pMXE	ENSMUST00000135510.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.30	3	7	3	7	y	0.20	1	4	1	4	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	ENSMUSG00000038187.15	Btbd10	chr7	protein_coding	BTB (POZ) domain containing 10
novel_NIR_16790	chr7	112934725	112964112	-	112934725	112968079	A5SS	ENSMUST00000119278.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.43	3	4	3	4	y	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	ENSMUSG00000038187.15	Btbd10	chr7	protein_coding	BTB (POZ) domain containing 10
novel_NIR_16791	chr7	112934725	112964112	-	112934725;112951145	112950988;112964112	ES	ENSMUST00000047091.14	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.38	3	5.0	3	7;3	y	0.25	1	3.0	1	4;2	n	0.00	0	5.0	0	5;5	n	0.00	0	1.0	0	0;2	n	0.00	0	4.0	0	8;0	n	0.00	0	2.5	0	2;3	n	-	-	-	-	-	-	0.00	0	1.5	0	0;3	n	-	-	-	-	-	-	0.18	1	4.5	1	2;7	n	ENSMUSG00000038187.15	Btbd10	chr7	protein_coding	BTB (POZ) domain containing 10
novel_NIR_16792	chr7	113873695	113874859	-	113873695	113875196	A5SS	ENSMUST00000135570.8	novel	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.43	3	4	3	4	y	0.00	0	2	0	2	n	0.20	2	8	2	8	y	-	-	-	-	-	-	0.00	0	7	0	7	n	0.29	4	10	4	10	y	0.00	0	4	0	4	n	0.11	1	8	1	8	n	ENSMUSG00000030751.19	Psma1	chr7	protein_coding	proteasome subunit alpha 1
novel_NIR_16793	chr7	114152045	114161968	-	114152045;114153870	114153826;114161968	ES	ENSMUST00000147428.2	novel	0.00	0	2.5	0	5;0	n	0.00	0	1.0	0	2;0	n	0.00	0	2.0	0	4;0	n	0.33	1	2.0	1	4;0	n	0.33	2	4.0	2	6;2	y	0.33	1	2.0	1	4;0	n	0.00	0	2.0	0	4;0	n	0.00	0	4.0	0	3;5	n	0.14	1	6.0	1	12;0	n	0.00	0	4.5	0	9;0	n	0.00	0	3.5	0	5;2	n	0.00	0	4.0	0	8;0	n	ENSMUSG00000030670.17	Cyp2r1	chr7	protein_coding	cytochrome P450, family 2, subfamily r, polypeptide 1
novel_NIR_16794	chr7	114152045	114161968	-	114152588	114161968	A3SS	ENSMUST00000211506.2	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.14	1	6	1	6	n	0.29	2	5	2	5	y	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	ENSMUSG00000030670.17	Cyp2r1	chr7	protein_coding	cytochrome P450, family 2, subfamily r, polypeptide 1
novel_NIR_16795	chr7	114152045	114161968	-	114153870	114161968	A3SS&ES	ENSMUST00000138712.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	2	2	2	2	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	5	0	5	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000030670.17	Cyp2r1	chr7	protein_coding	cytochrome P450, family 2, subfamily r, polypeptide 1
novel_NIR_16796	chr7	115089071	115111896	-	115089131	115111896	A3SS	ENSMUST00000206034.2	novel	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.23	3	10	3	10	y	0.00	0	17	0	17	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	ENSMUSG00000051910.14	Sox6	chr7	protein_coding	SRY (sex determining region Y)-box 6
novel_NIR_16797	chr7	115881072	115885297	-	115881072	115881918	5pMXE	ENSMUST00000205675.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000108650.2	Gm44867	chr7	lncRNA	predicted gene 44867
novel_NIR_16798	chr7	115881072	115907160	-	115788588	115907160	A3SS	ENSMUST00000181998.8	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.22	2	7	2	7	y	0.00	0	6	0	6	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	ENSMUSG00000045659.19	Plekha7	chr7	protein_coding	pleckstrin homology domain containing, family A member 7
novel_NIR_16799	chr7	115881072	115907160	-	115881072	115881918	5pMXE	ENSMUST00000205675.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000108650.2	Gm44867	chr7	lncRNA	predicted gene 44867
novel_NIR_16800	chr7	115907217	115907486	-	115907217	115907307	5pMXE	ENSMUST00000183057.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.08	1	11	1	11	n	0.00	0	9	0	9	n	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.17	1	5	1	5	n	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	9	0	9	n	ENSMUSG00000045659.19	Plekha7	chr7	protein_coding	pleckstrin homology domain containing, family A member 7
novel_NIR_16801	chr7	115907217	115907486	-	115907217;115907383	115907307;115907486	ES	ENSMUST00000181998.8	novel	0.00	0	2.0	0	2;2	n	0.00	0	0.5	0	1;0	n	0.11	1	8.0	1	11;5	n	0.00	0	7.0	0	9;5	n	0.33	2	4.0	2	3;5	y	0.00	0	2.0	0	1;3	n	0.17	1	5.0	1	5;5	n	0.00	0	1.0	0	0;2	n	0.00	0	5.0	0	6;4	n	0.00	0	1.0	0	0;2	n	0.00	0	5.0	0	6;4	n	0.00	0	6.0	0	9;3	n	ENSMUSG00000045659.19	Plekha7	chr7	protein_coding	pleckstrin homology domain containing, family A member 7
novel_NIR_16802	chr7	115975794	115987079	-	115975794;115977998	115977855;115987079	ES	ENSMUST00000170430.3	novel	0.00	0	18.0	0	20;16	n	0.00	0	7.5	0	9;6	n	0.00	0	41.0	0	42;40	n	0.17	2	10.0	2	10;10	y	0.05	1	17.5	1	14;21	n	0.00	0	20.0	0	18;22	n	0.00	0	10.0	0	12;8	n	0.00	0	18.5	0	16;21	n	0.00	0	8.5	0	7;10	n	0.05	1	18.5	1	21;16	n	0.00	0	7.5	0	7;8	n	0.00	0	15.0	0	15;15	n	ENSMUSG00000030660.10	Pik3c2a	chr7	protein_coding	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha
novel_NIR_16803	chr7	116005198	116016787	-	116005198	116016688	A5SS	ENSMUST00000170430.3	novel	0.07	1	14	1	14	n	0.00	0	9	0	9	n	0.00	0	40	0	40	n	0.07	1	13	1	13	n	0.18	3	14	3	14	y	0.04	1	24	1	24	n	0.00	0	7	0	7	n	0.08	1	12	1	12	n	0.09	1	10	1	10	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.05	1	19	1	19	n	ENSMUSG00000030660.10	Pik3c2a	chr7	protein_coding	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha
novel_NIR_16804	chr7	116005198	116041826	-	116005198;116017816	116016688;116041826	ES	ENSMUST00000206219.2	novel	0.00	0	8.5	0	14;3	n	0.00	0	4.5	0	9;0	n	0.00	0	22.0	0	40;4	n	0.00	0	9.0	0	13;5	n	0.19	2	8.5	2	14;3	y	0.00	0	12.0	0	24;0	n	0.00	0	4.0	0	7;1	n	0.00	0	7.5	0	12;3	n	0.00	0	6.0	0	10;2	n	0.00	0	10.0	0	15;5	n	0.00	0	3.0	0	6;0	n	0.00	0	11.5	0	19;4	n	ENSMUSG00000030660.10	Pik3c2a	chr7	protein_coding	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha
novel_NIR_16805	chr7	117726490	117738636	-	117726490	117728119	5pMXE	ENSMUST00000205182.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000030654.10	Arl6ip1	chr7	protein_coding	ADP-ribosylation factor-like 6 interacting protein 1
novel_NIR_16806	chr7	117795154	117797414	-	117795258	117797414	A3SS	ENSMUST00000032891.15	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.17	1	5	1	5	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.08	1	11	1	11	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.18	2	9	2	9	y	ENSMUSG00000030655.16	Smg1	chr7	protein_coding	SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)
novel_NIR_16807	chr7	118145022	118146540	-	118145011	118146540	A3SS	ENSMUST00000044195.6	novel	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.05	1	21	1	21	n	0.00	0	21	0	21	n	0.25	3	9	3	9	y	0.00	0	7	0	7	n	0.04	1	22	1	22	n	0.08	1	11	1	11	n	0.17	1	5	1	5	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	ENSMUSG00000042246.6	Tmc7	chr7	protein_coding	transmembrane channel-like gene family 7
novel_NIR_16808	chr7	118150532	118151934	-	118150532	118151921	A5SS	ENSMUST00000044195.6	novel	0.00	0	16	0	16	n	0.09	2	20	2	20	n	0.00	0	33	0	33	n	0.18	2	9	2	9	y	0.07	1	14	1	14	n	0.09	1	10	1	10	n	0.00	0	18	0	18	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	ENSMUSG00000042246.6	Tmc7	chr7	protein_coding	transmembrane channel-like gene family 7
novel_NIR_16809	chr7	118297953	118298061	-	118297953	118304494	A5SS	ENSMUST00000132509.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033917.16	Gde1	chr7	protein_coding	glycerophosphodiester phosphodiesterase 1
novel_NIR_16810	chr7	118322261	118323681	+	118322261	118323678	A3SS	ENSMUST00000106557.8	novel	0.00	0	5	0	5	n	0.22	2	7	2	7	y	0.00	0	13	0	13	n	0.22	2	7	2	7	y	0.14	2	12	2	12	n	0.00	0	4	0	4	n	0.38	3	5	3	5	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.60	3	2	3	2	y	0.00	0	9	0	9	n	ENSMUSG00000033904.17	Ccp110	chr7	protein_coding	centriolar coiled coil protein 110
novel_NIR_16811	chr7	118359468	118372244	+	118359468	118360989	3pMXE	ENSMUST00000175922.8	novel	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.43	3	4	3	4	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	ENSMUSG00000030982.20	Vps35l	chr7	protein_coding	VPS35 endosomal protein sorting factor like
novel_NIR_16812	chr7	118379522	118386237	+	118379522	118382978	3pMXE	ENSMUST00000129334.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000030982.20	Vps35l	chr7	protein_coding	VPS35 endosomal protein sorting factor like
novel_NIR_16813	chr7	118379522	118386237	+	118379522	118389233	A3SS	ENSMUST00000059390.13	novel	0.00	0	27	0	27	n	0.00	0	32	0	32	n	0.00	0	54	0	54	n	0.00	0	41	0	41	n	0.00	0	34	0	34	n	0.15	3	17	3	17	y	0.00	0	46	0	46	n	0.00	0	19	0	19	n	0.00	0	24	0	24	n	0.00	0	29	0	29	n	0.00	0	29	0	29	n	0.00	0	28	0	28	n	ENSMUSG00000030982.20	Vps35l	chr7	protein_coding	VPS35 endosomal protein sorting factor like
novel_NIR_16814	chr7	118409227	118411028	+	118406277	118411028	A5SS	ENSMUST00000149749.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000030982.20	Vps35l	chr7	protein_coding	VPS35 endosomal protein sorting factor like
novel_NIR_16815	chr7	118476920	118478017	+	118476920	118498853	A3SS	ENSMUST00000153518.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000073856.12	Iqck	chr7	protein_coding	IQ motif containing K
novel_NIR_16816	chr7	119097325	119097386	-	119097306	119097386	A3SS	ENSMUST00000033267.4	novel	0.15	2	11	2	11	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	12	0	12	n	0.00	0	12	0	12	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	16	0	16	n	0.00	0	19	0	19	n	0.08	1	12	1	12	n	0.00	0	18	0	18	n	ENSMUSG00000030968.4	Pdilt	chr7	protein_coding	protein disulfide isomerase-like, testis expressed
novel_NIR_16817	chr7	119097496	119097930	-	119097496	119097946	A5SS	ENSMUST00000208275.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030968.4	Pdilt	chr7	protein_coding	protein disulfide isomerase-like, testis expressed
novel_NIR_16818	chr7	119112037	119114097	-	119100949	119114097	A3SS	ENSMUST00000033267.4	novel	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	18	0	18	n	0.22	2	7	2	7	y	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.06	1	15	1	15	n	0.00	0	18	0	18	n	0.00	0	19	0	19	n	ENSMUSG00000030968.4	Pdilt	chr7	protein_coding	protein disulfide isomerase-like, testis expressed
novel_NIR_16819	chr7	119112183	119114097	-	119100949	119114097	A3SS	ENSMUST00000033267.4	novel	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.05	1	18	1	18	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.15	2	11	2	11	y	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.14	3	18	3	18	n	0.00	0	19	0	19	n	ENSMUSG00000030968.4	Pdilt	chr7	protein_coding	protein disulfide isomerase-like, testis expressed
novel_NIR_16820	chr7	119112327	119114097	-	119100949	119114097	A3SS	ENSMUST00000033267.4	novel	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	18	0	18	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.25	1	3	1	3	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.00	0	18	0	18	n	0.17	4	19	4	19	y	ENSMUSG00000030968.4	Pdilt	chr7	protein_coding	protein disulfide isomerase-like, testis expressed
novel_NIR_16821	chr7	119119054	119127771	-	119119054	119122478	5pMXE	ENSMUST00000033267.4	novel	1.00	4	0	4	0	y	1.00	5	0	5	0	y	0.80	4	1	4	1	y	1.00	11	0	11	0	y	1.00	10	0	10	0	y	1.00	3	0	3	0	y	1.00	7	0	7	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	10	0	10	0	y	1.00	22	0	22	0	y	1.00	10	0	10	0	y	ENSMUSG00000030968.4	Pdilt	chr7	protein_coding	protein disulfide isomerase-like, testis expressed
novel_NIR_16822	chr7	119119054	119128062	-	119119054	119122478	5pMXE	ENSMUST00000033267.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000030968.4	Pdilt	chr7	protein_coding	protein disulfide isomerase-like, testis expressed
novel_NIR_16823	chr7	119140133	119141525	+	119140133	119141203	A3SS&ES	ENSMUST00000207796.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030972.7	Acsm5	chr7	protein_coding	acyl-CoA synthetase medium-chain family member 5
novel_NIR_16824	chr7	119210784	119216824	-	119210784	119211994	A5SS&ES	ENSMUST00000207060.2	novel	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	7	0	7	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	ENSMUSG00000109093.2	Gm19950	chr7	lncRNA	predicted gene, 19950
novel_NIR_16825	chr7	119210784	119216824	-	119210784	119230400	A5SS	ENSMUST00000208167.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000109093.2	Gm19950	chr7	lncRNA	predicted gene, 19950
novel_NIR_16826	chr7	119219520	119220177	-	119219520	119230400	A5SS	ENSMUST00000207364.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000109093.2	Gm19950	chr7	lncRNA	predicted gene, 19950
novel_NIR_16827	chr7	119220359	119221721	+	119206346	119221721	A5SS	ENSMUST00000126367.8	novel	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	5	0	5	0	y	0.67	2	1	2	1	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033533.15	Acsm1	chr7	protein_coding	acyl-CoA synthetase medium-chain family member 1
novel_NIR_16828	chr7	119221315	119221721	+	119206346	119221721	A5SS	ENSMUST00000126367.8	novel	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000033533.15	Acsm1	chr7	protein_coding	acyl-CoA synthetase medium-chain family member 1
novel_NIR_16829	chr7	119229102	119230400	-	119210784	119230400	A3SS	ENSMUST00000208167.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000109093.2	Gm19950	chr7	lncRNA	predicted gene, 19950
novel_NIR_16830	chr7	119229102	119230400	-	119219520	119230400	A3SS	ENSMUST00000207364.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000109093.2	Gm19950	chr7	lncRNA	predicted gene, 19950
novel_NIR_16831	chr7	119230514	119230758	-	119230514	119241475	A5SS	ENSMUST00000208167.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	4	0	4	0	y	ENSMUSG00000109093.2	Gm19950	chr7	lncRNA	predicted gene, 19950
novel_NIR_16832	chr7	119323567	119323674	-	119322868	119323674	A3SS	ENSMUST00000208774.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000109233.2	Gm44866	chr7	lncRNA	predicted gene 44866
novel_NIR_16833	chr7	119360205	119365737	+	119360205	119365596	A3SS	ENSMUST00000106528.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	0.67	2	1	2	1	y	0.33	2	4	2	4	y	-	-	-	-	-	-	0.38	3	5	3	5	y	0.50	2	2	2	2	y	1.00	7	0	7	0	y	0.43	3	4	3	4	y	0.80	4	1	4	1	y	0.67	2	1	2	1	y	ENSMUSG00000030935.16	Acsm3	chr7	protein_coding	acyl-CoA synthetase medium-chain family member 3
novel_NIR_16834	chr7	119360205	119365737	+	119360205	119366114	A3SS	ENSMUST00000106527.8	novel	0.00	0	19	0	19	n	0.00	0	16	0	16	n	0.09	2	21	2	21	n	0.05	2	42	2	42	n	0.05	2	40	2	40	n	0.00	0	20	0	20	n	0.06	3	51	3	51	n	0.09	2	20	2	20	n	0.23	7	24	7	24	y	0.05	3	59	3	59	n	0.12	4	28	4	28	n	0.05	2	39	2	39	n	ENSMUSG00000030935.16	Acsm3	chr7	protein_coding	acyl-CoA synthetase medium-chain family member 3
novel_NIR_16835	chr7	119360302	119365596	+	119360205	119365596	A5SS	ENSMUST00000106528.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.86	6	1	6	1	y	0.56	5	4	5	4	y	1.00	3	0	3	0	y	0.44	4	5	4	5	y	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.43	3	4	3	4	y	0.00	0	1	0	1	n	0.83	5	1	5	1	y	ENSMUSG00000030935.16	Acsm3	chr7	protein_coding	acyl-CoA synthetase medium-chain family member 3
novel_NIR_16836	chr7	119398900	119401964	+	119398900;119400579	119400453;119401964	ES	ENSMUST00000033218.15	novel	0.44	2	2.5	2	1;4	y	0.25	1	3.0	1	5;1	n	0.00	0	3.0	0	3;3	n	0.00	0	4.0	0	4;4	n	0.00	0	5.0	0	5;5	n	0.00	0	1.0	0	1;1	n	0.18	1	4.5	1	5;4	n	0.00	0	2.0	0	2;2	n	-	-	-	-	-	-	0.12	1	7.5	1	8;7	n	0.29	1	2.5	1	2;3	n	0.00	0	0.5	0	0;1	n	ENSMUSG00000030924.17	Rexo5	chr7	protein_coding	RNA exonuclease 5
novel_NIR_16837	chr7	119423117	119424759	+	119423117	119426526	A3SS	ENSMUST00000033218.15	novel	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030924.17	Rexo5	chr7	protein_coding	RNA exonuclease 5
novel_NIR_16838	chr7	119423117	119424759	+	119423117;119423362	119423268;119424759	ES	ENSMUST00000106520.9	novel	0.00	0	6.0	0	5;7	n	0.21	2	7.5	2	9;6	y	0.00	0	0.5	0	0;1	n	0.00	0	9.0	0	8;10	n	0.00	0	7.5	0	9;6	n	0.00	0	1.5	0	2;1	n	0.14	1	6.0	1	8;4	n	0.00	0	4.0	0	7;1	n	0.00	0	10.5	0	11;10	n	0.00	0	3.0	0	3;3	n	0.00	0	2.5	0	4;1	n	0.00	0	3.0	0	3;3	n	ENSMUSG00000030924.17	Rexo5	chr7	protein_coding	RNA exonuclease 5
novel_NIR_16839	chr7	119423117	119424759	+	119423362	119424759	5pMXE	ENSMUST00000149132.2	novel	0.00	0	7	0	7	n	0.25	2	6	2	6	y	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000030924.17	Rexo5	chr7	protein_coding	RNA exonuclease 5
novel_NIR_16840	chr7	119430699	119431894	+	119426599	119431894	A5SS	ENSMUST00000149132.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000030924.17	Rexo5	chr7	protein_coding	RNA exonuclease 5
novel_NIR_16841	chr7	119430699	119431894	+	119427429	119431894	A5SS	ENSMUST00000033218.15	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	0.29	2	5	2	5	y	0.00	0	2	0	2	n	ENSMUSG00000030924.17	Rexo5	chr7	protein_coding	RNA exonuclease 5
novel_NIR_16842	chr7	119430773	119431894	+	119426599	119431894	A5SS	ENSMUST00000149132.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	0.50	1	1	1	1	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000030924.17	Rexo5	chr7	protein_coding	RNA exonuclease 5
novel_NIR_16843	chr7	119430773	119431894	+	119427429	119431894	A5SS	ENSMUST00000033218.15	novel	0.75	3	1	3	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.50	3	3	3	3	y	0.80	4	1	4	1	y	0.33	1	2	1	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.33	3	6	3	6	y	0.29	2	5	2	5	y	0.33	1	2	1	2	n	ENSMUSG00000030924.17	Rexo5	chr7	protein_coding	RNA exonuclease 5
novel_NIR_16844	chr7	119458766	119494475	-	119459138	119494475	A3SS	ENSMUST00000098080.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000048787.14	Dcun1d3	chr7	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
novel_NIR_16845	chr7	119459138	119469638	-	119459138	119460970	5pMXE	ENSMUST00000137888.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000048787.14	Dcun1d3	chr7	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
novel_NIR_16846	chr7	119459138	119469638	-	119459138	119461026	5pMXE	ENSMUST00000142120.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000048787.14	Dcun1d3	chr7	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
novel_NIR_16847	chr7	119459138	119469638	-	119459138	119494475	A5SS	ENSMUST00000098080.9	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000048787.14	Dcun1d3	chr7	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
novel_NIR_16848	chr7	119459138	119469638	-	119459138	119494781	A5SS	ENSMUST00000059851.14	novel	0.25	2	6	2	6	y	0.00	0	5	0	5	n	0.00	0	23	0	23	n	0.00	0	16	0	16	n	0.06	1	15	1	15	n	0.00	0	9	0	9	n	0.07	1	13	1	13	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	ENSMUSG00000048787.14	Dcun1d3	chr7	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
novel_NIR_16849	chr7	119459138	119469638	-	119459138	119495308	A5SS	ENSMUST00000106519.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000048787.14	Dcun1d3	chr7	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
novel_NIR_16850	chr7	119459138	119494294	-	119459138	119460970	5pMXE	ENSMUST00000137888.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000048787.14	Dcun1d3	chr7	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
novel_NIR_16851	chr7	119459138	119494294	-	119459138	119461026	5pMXE	ENSMUST00000142120.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000048787.14	Dcun1d3	chr7	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
novel_NIR_16852	chr7	119459138	119494294	-	119459138	119494475	A5SS	ENSMUST00000098080.9	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.67	2	1	2	1	y	1.00	2	0	2	0	n	1.00	1	0	1	0	n	ENSMUSG00000048787.14	Dcun1d3	chr7	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
novel_NIR_16853	chr7	119459138	119494294	-	119459138	119494781	A5SS	ENSMUST00000059851.14	novel	0.00	0	6	0	6	n	0.17	1	5	1	5	n	0.04	1	23	1	23	n	0.00	0	16	0	16	n	0.00	0	15	0	15	n	0.18	2	9	2	9	y	0.13	2	13	2	13	n	0.00	0	13	0	13	n	0.17	1	5	1	5	n	0.17	2	10	2	10	n	0.29	2	5	2	5	y	0.20	1	4	1	4	n	ENSMUSG00000048787.14	Dcun1d3	chr7	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
novel_NIR_16854	chr7	119459138	119494294	-	119459138	119495308	A5SS	ENSMUST00000106519.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000048787.14	Dcun1d3	chr7	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
novel_NIR_16855	chr7	119459138	119494854	-	119459138	119460970	5pMXE	ENSMUST00000137888.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000048787.14	Dcun1d3	chr7	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
novel_NIR_16856	chr7	119459138	119494854	-	119459138	119461026	5pMXE	ENSMUST00000142120.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000048787.14	Dcun1d3	chr7	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
novel_NIR_16857	chr7	119459138	119494854	-	119459138	119494475	5pMXE	ENSMUST00000098080.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000048787.14	Dcun1d3	chr7	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
novel_NIR_16858	chr7	119459138	119494854	-	119459138	119494781	A5SS	ENSMUST00000059851.14	novel	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	23	0	23	n	0.00	0	16	0	16	n	0.00	0	15	0	15	n	0.25	3	9	3	9	y	0.13	2	13	2	13	n	0.00	0	13	0	13	n	0.17	1	5	1	5	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	ENSMUSG00000048787.14	Dcun1d3	chr7	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
novel_NIR_16859	chr7	119459138	119494854	-	119459138	119495308	A5SS	ENSMUST00000106519.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000048787.14	Dcun1d3	chr7	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
novel_NIR_16860	chr7	119459138;119494369	119494294;119494475	-	119459138	119494475	cassetteExon	ENSMUST00000098080.9	novel	-	-	-	-	-	-	1.00	0.5	0	1;0	0	n	1.00	1.0	0	1;1	0	n	1.00	0.5	0	0;1	0	n	1.00	1.0	0	0;2	0	n	1.00	2.0	0	2;2	0	y	1.00	1.0	0	2;0	0	n	-	-	-	-	-	-	1.00	0.5	0	1;0	0	n	0.50	1.0	1	2;0	1	n	1.00	1.5	0	2;1	0	n	1.00	1.5	0	1;2	0	n	ENSMUSG00000048787.14	Dcun1d3	chr7	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
novel_NIR_16861	chr7	119494369	119494475	-	119459138	119494475	A3SS	ENSMUST00000098080.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	n	ENSMUSG00000048787.14	Dcun1d3	chr7	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
novel_NIR_16862	chr7	119509185	119509269	+	119509185	119513396	A3SS	ENSMUST00000106518.9	novel	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	18	0	18	n	0.00	0	24	0	24	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.17	2	10	2	10	y	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.00	0	15	0	15	n	ENSMUSG00000030922.13	Lyrm1	chr7	protein_coding	LYR motif containing 1
novel_NIR_16863	chr7	119891777	119893339	+	119888842	119893339	A5SS	ENSMUST00000084640.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.60	3	2	3	2	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000062017.16	Abca14	chr7	protein_coding	ATP-binding cassette, sub-family A (ABC1), member 14
novel_NIR_16864	chr7	120234545	120236904	+	120234545	120234652	A3SS&ES	ENSMUST00000150675.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030884.13	Uqcrc2	chr7	protein_coding	ubiquinol cytochrome c reductase core protein 2
novel_NIR_16865	chr7	120277093	120293511	+	120277093	120324458	A3SS	ENSMUST00000207065.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	ENSMUSG00000046096.8	Mosmo	chr7	protein_coding	modulator of smoothened
novel_NIR_16866	chr7	120325555	120331726	+	120325555	120331588	3pMXE	ENSMUST00000207646.2	novel	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.50	1	1	1	1	n	0.29	2	5	2	5	y	0.33	3	6	3	6	y	1.00	2	0	2	0	y	0.17	2	10	2	10	y	0.33	1	2	1	2	n	0.50	2	2	2	2	y	0.14	1	6	1	6	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	ENSMUSG00000046096.8	Mosmo	chr7	protein_coding	modulator of smoothened
novel_NIR_16867	chr7	120527733	120530107	+	120527733	120530102	A3SS	ENSMUST00000207481.2	novel	0.10	2	18	2	18	n	0.18	4	18	4	18	y	0.00	0	40	0	40	n	0.04	1	25	1	25	n	0.12	4	28	4	28	n	0.05	1	21	1	21	n	0.00	0	30	0	30	n	0.00	0	15	0	15	n	0.10	2	19	2	19	n	0.03	1	30	1	30	n	0.00	0	23	0	23	n	0.08	2	22	2	22	n	ENSMUSG00000030880.15	Polr3e	chr7	protein_coding	polymerase (RNA) III (DNA directed) polypeptide E
novel_NIR_16868	chr7	120634496	120647061	+	120634899	120647061	5pMXE	ENSMUST00000207351.2	novel	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	10	0	10	0	y	1.00	5	0	5	0	y	1.00	6	0	6	0	y	0.80	4	1	4	1	y	0.67	6	3	6	3	y	0.75	6	2	6	2	y	1.00	2	0	2	0	y	0.86	6	1	6	1	y	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000030876.8	Mettl9	chr7	protein_coding	methyltransferase like 9
novel_NIR_16869	chr7	120634496	120647061	+	120635024	120647061	5pMXE	ENSMUST00000207332.2	novel	1.00	1	0	1	0	n	0.83	5	1	5	1	y	0.77	10	3	10	3	y	0.83	5	1	5	1	y	1.00	6	0	6	0	y	1.00	4	0	4	0	y	0.86	6	1	6	1	y	1.00	6	0	6	0	y	1.00	2	0	2	0	y	1.00	6	0	6	0	y	1.00	3	0	3	0	y	0.00	0	1	0	1	n	ENSMUSG00000030876.8	Mettl9	chr7	protein_coding	methyltransferase like 9
novel_NIR_16870	chr7	120634845	120647061	+	120634899	120647061	A5SS	ENSMUST00000207351.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	0.80	4	1	4	1	y	0.40	2	3	2	3	y	0.50	2	2	2	2	y	1.00	2	0	2	0	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000030876.8	Mettl9	chr7	protein_coding	methyltransferase like 9
novel_NIR_16871	chr7	120634845	120647061	+	120635024	120647061	A5SS	ENSMUST00000207332.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.57	4	3	4	3	y	0.00	0	1	0	1	n	1.00	3	0	3	0	y	1.00	4	0	4	0	y	0.67	2	1	2	1	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.67	2	1	2	1	y	ENSMUSG00000030876.8	Mettl9	chr7	protein_coding	methyltransferase like 9
novel_NIR_16872	chr7	120646598	120647061	+	120634899	120647061	A5SS	ENSMUST00000207351.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000030876.8	Mettl9	chr7	protein_coding	methyltransferase like 9
novel_NIR_16873	chr7	120646598	120647061	+	120635024	120647061	A5SS	ENSMUST00000207332.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	ENSMUSG00000030876.8	Mettl9	chr7	protein_coding	methyltransferase like 9
novel_NIR_16874	chr7	120656622	120675356	+	120656622	120675353	A3SS	ENSMUST00000033163.8	novel	0.33	55	114	55	114	y	0.18	29	135	29	135	y	0.27	84	228	84	228	y	0.28	44	111	44	111	y	0.27	74	197	74	197	y	0.24	46	146	46	146	y	0.25	58	175	58	175	y	0.26	38	111	38	111	y	0.23	34	116	34	116	y	0.24	64	202	64	202	y	0.23	40	135	40	135	y	0.23	43	142	43	142	y	ENSMUSG00000030876.8	Mettl9	chr7	protein_coding	methyltransferase like 9
novel_NIR_16875	chr7	121252483	121258161	-	121252483	121258111	A5SS	ENSMUST00000046929.7	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.50	3	3	3	3	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000063317.8	Usp31	chr7	protein_coding	ubiquitin specific peptidase 31
novel_NIR_16876	chr7	121639062	121643525	-	121639119	121643525	A3SS	ENSMUST00000151530.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000030871.12	Ears2	chr7	protein_coding	glutamyl-tRNA synthetase 2, mitochondrial
novel_NIR_16877	chr7	121671238	121672639	+	121671238	121673690	A3SS	ENSMUST00000153640.3	novel	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	n	ENSMUSG00000030870.13	Ubfd1	chr7	protein_coding	ubiquitin family domain containing 1
novel_NIR_16878	chr7	121690290	121690809	-	121687829	121690809	A3SS	ENSMUST00000146964.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000030869.12	Ndufab1	chr7	protein_coding	NADH:ubiquinone oxidoreductase subunit AB1
novel_NIR_16879	chr7	121690290	121690809	-	121690212	121690809	A3SS	ENSMUST00000106471.9	novel	0.00	0	8	0	8	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000030869.12	Ndufab1	chr7	protein_coding	NADH:ubiquinone oxidoreductase subunit AB1
novel_NIR_16880	chr7	121690908	121695832	-	121693272	121695832	3pMXE	ENSMUST00000145863.2	novel	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.80	4	1	4	1	y	1.00	1	0	1	0	n	ENSMUSG00000030869.12	Ndufab1	chr7	protein_coding	NADH:ubiquinone oxidoreductase subunit AB1
novel_NIR_16881	chr7	12212771	12213591	+	12212633	12213591	A5SS	ENSMUST00000098822.10	novel	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.40	2	3	2	3	y	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.06	1	16	1	16	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	ENSMUSG00000030386.20	Zfp606	chr7	protein_coding	zinc finger protein 606
novel_NIR_16882	chr7	12212799	12213591	+	12212633	12213591	A5SS	ENSMUST00000098822.10	novel	0.00	0	4	0	4	n	0.11	1	8	1	8	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.22	2	7	2	7	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	ENSMUSG00000030386.20	Zfp606	chr7	protein_coding	zinc finger protein 606
novel_NIR_16883	chr7	12214953	12217964	+	12214953	12215045	A3SS&ES	ENSMUST00000151933.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	0.80	4	1	4	1	y	0.33	3	6	3	6	y	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.86	6	1	6	1	y	0.50	2	2	2	2	y	0.25	1	3	1	3	n	ENSMUSG00000030386.20	Zfp606	chr7	protein_coding	zinc finger protein 606
novel_NIR_16884	chr7	12214953	12217964	+	12214953	12223497	A3SS	ENSMUST00000098822.10	novel	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.07	1	14	1	14	n	0.31	4	9	4	9	y	0.15	3	17	3	17	y	0.17	1	5	1	5	n	0.00	0	16	0	16	n	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.26	6	17	6	17	y	0.20	2	8	2	8	y	0.10	1	9	1	9	n	ENSMUSG00000030386.20	Zfp606	chr7	protein_coding	zinc finger protein 606
novel_NIR_16885	chr7	12215108	12217964	+	12215108	12223497	A3SS	ENSMUST00000151933.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.20	1	4	1	4	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.50	1	1	1	1	n	ENSMUSG00000030386.20	Zfp606	chr7	protein_coding	zinc finger protein 606
novel_NIR_16886	chr7	122773542	122773761	+	122773542	122774649	A3SS	ENSMUST00000094053.7	novel	0.07	2	27	2	27	n	0.00	0	11	0	11	n	0.04	1	23	1	23	n	0.06	2	29	2	29	n	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.14	3	18	3	18	n	0.07	1	13	1	13	n	0.14	3	18	3	18	n	0.05	1	19	1	19	n	0.00	0	14	0	14	n	0.16	4	21	4	21	y	ENSMUSG00000052707.9	Tnrc6a	chr7	protein_coding	trinucleotide repeat containing 6a
novel_NIR_16887	chr7	122773542	122773761	+	122773542	122776047	A3SS	ENSMUST00000206888.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.33	1	2	1	2	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.75	3	1	3	1	y	0.33	1	2	1	2	n	1.00	3	0	3	0	y	0.14	1	6	1	6	n	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000052707.9	Tnrc6a	chr7	protein_coding	trinucleotide repeat containing 6a
novel_NIR_16888	chr7	122773542	122773969	+	122773542	122774649	A3SS	ENSMUST00000094053.7	novel	0.00	0	27	0	27	n	0.15	2	11	2	11	y	0.00	0	23	0	23	n	0.00	0	29	0	29	n	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.00	0	18	0	18	n	0.05	1	19	1	19	n	0.00	0	14	0	14	n	0.05	1	21	1	21	n	ENSMUSG00000052707.9	Tnrc6a	chr7	protein_coding	trinucleotide repeat containing 6a
novel_NIR_16889	chr7	122773542	122773969	+	122773542	122776047	A3SS	ENSMUST00000206888.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.14	1	6	1	6	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000052707.9	Tnrc6a	chr7	protein_coding	trinucleotide repeat containing 6a
novel_NIR_16890	chr7	122774551	122774649	+	122773542	122774649	A5SS	ENSMUST00000094053.7	novel	0.00	0	27	0	27	n	0.00	0	11	0	11	n	0.00	0	23	0	23	n	0.00	0	29	0	29	n	0.00	0	13	0	13	n	0.18	3	14	3	14	y	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.00	0	18	0	18	n	0.00	0	19	0	19	n	0.00	0	14	0	14	n	0.00	0	21	0	21	n	ENSMUSG00000052707.9	Tnrc6a	chr7	protein_coding	trinucleotide repeat containing 6a
novel_NIR_16891	chr7	122779900	122780611	+	122779900	122780542	A3SS	ENSMUST00000094053.7	novel	0.00	0	24	0	24	n	0.00	0	7	0	7	n	0.00	0	47	0	47	n	0.05	1	20	1	20	n	0.25	13	38	13	38	y	0.15	3	17	3	17	y	0.00	0	34	0	34	n	0.10	4	35	4	35	n	0.13	4	27	4	27	n	0.03	1	38	1	38	n	0.03	1	30	1	30	n	0.09	4	39	4	39	n	ENSMUSG00000052707.9	Tnrc6a	chr7	protein_coding	trinucleotide repeat containing 6a
novel_NIR_16892	chr7	125055747	125056136	+	125055737	125056136	A5SS	ENSMUST00000033010.9	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.67	2	1	2	1	y	0.00	0	3	0	3	n	0.00	0	8	0	8	n	ENSMUSG00000030752.9	Kdm8	chr7	protein_coding	lysine (K)-specific demethylase 8
novel_NIR_16893	chr7	125308407	125327481	+	125307120	125327481	A5SS	ENSMUST00000069660.13	novel	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.29	2	5	2	5	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.33	2	4	2	4	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032743.16	Katnip	chr7	protein_coding	katanin interacting protein
novel_NIR_16894	chr7	12545593	12549811	-	12545593	12552744	A5SS	ENSMUST00000108546.2	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.67	4	2	4	2	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000057894.11	Zfp329	chr7	protein_coding	zinc finger protein 329
novel_NIR_16895	chr7	12569454	12570178	+	12569454	12569882	3pMXE	ENSMUST00000154011.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000058638.15	Zfp110	chr7	protein_coding	zinc finger protein 110
novel_NIR_16896	chr7	125701562	125702230	-	125701562	125702251	A5SS	ENSMUST00000166719.8	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.29	2	5	2	5	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	ENSMUSG00000000131.16	Xpo6	chr7	protein_coding	exportin 6
novel_NIR_16897	chr7	125702362	125702836	-	125702362	125702795	A5SS	ENSMUST00000166719.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000000131.16	Xpo6	chr7	protein_coding	exportin 6
novel_NIR_16898	chr7	125702362	125702836	-	125702362	125703876	A5SS	ENSMUST00000168564.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	-	-	-	-	-	-	ENSMUSG00000000131.16	Xpo6	chr7	protein_coding	exportin 6
novel_NIR_16899	chr7	125728809	125729327	-	125728809	125730198	A5SS	ENSMUST00000009344.16	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.38	3	5	3	5	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000000131.16	Xpo6	chr7	protein_coding	exportin 6
novel_NIR_16900	chr7	125748532	125750396	-	125748532	125748676	A5SS&ES	ENSMUST00000168649.8	novel	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000000131.16	Xpo6	chr7	protein_coding	exportin 6
novel_NIR_16901	chr7	125748532	125750396	-	125748532;125748709	125748676;125750396	ES	ENSMUST00000170675.8	novel	0.00	0	1.0	0	2;0	n	0.25	1	3.0	1	5;1	n	0.00	0	3.0	0	4;2	n	0.00	0	5.0	0	6;4	n	0.00	0	4.5	0	7;2	n	0.00	0	1.5	0	3;0	n	0.00	0	3.5	0	7;0	n	0.00	0	1.0	0	0;2	n	0.67	1	0.5	1	1;0	n	0.44	2	2.5	2	4;1	y	0.00	0	0.5	0	0;1	n	0.00	0	1.5	0	3;0	n	ENSMUSG00000000131.16	Xpo6	chr7	protein_coding	exportin 6
novel_NIR_16902	chr7	125748709	125752371	-	125748709	125750396	A5SS	ENSMUST00000170675.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	ENSMUSG00000000131.16	Xpo6	chr7	protein_coding	exportin 6
novel_NIR_16903	chr7	125748709	125752371	-	125748709	125751998	A5SS	ENSMUST00000168649.8	novel	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	ENSMUSG00000000131.16	Xpo6	chr7	protein_coding	exportin 6
novel_NIR_16904	chr7	125772939	125773330	-	125768498	125773330	A3SS	ENSMUST00000167147.2	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000000131.16	Xpo6	chr7	protein_coding	exportin 6
novel_NIR_16905	chr7	12582021	12582324	+	12582025	12582324	A5SS	ENSMUST00000004614.15	novel	0.04	1	24	1	24	n	0.05	2	39	2	39	n	0.01	1	67	1	67	n	0.15	6	34	6	34	y	0.06	3	51	3	51	n	0.06	2	33	2	33	n	0.00	0	41	0	41	n	0.00	0	22	0	22	n	0.00	0	31	0	31	n	0.00	0	42	0	42	n	0.00	0	18	0	18	n	0.10	4	38	4	38	n	ENSMUSG00000058638.15	Zfp110	chr7	protein_coding	zinc finger protein 110
novel_NIR_16906	chr7	125970078	125970713	-	125970078	125972942	A5SS	ENSMUST00000205930.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030741.16	Spns1	chr7	protein_coding	spinster homolog 1
novel_NIR_16907	chr7	125972078	125972942	-	125970078	125972942	A3SS	ENSMUST00000205930.2	novel	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030741.16	Spns1	chr7	protein_coding	spinster homolog 1
novel_NIR_16908	chr7	126028869	126034832	+	126033604	126034832	A5SS&ES	ENSMUST00000150530.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000030727.13	Rabep2	chr7	protein_coding	rabaptin, RAB GTPase binding effector protein 2
novel_NIR_16909	chr7	126038072	126039338	+	126038078	126039338	A5SS	ENSMUST00000151304.8	novel	0.00	0	25	0	25	n	0.00	0	13	0	13	n	0.00	0	24	0	24	n	0.00	0	22	0	22	n	0.00	0	36	0	36	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	18	0	18	n	0.18	4	18	4	18	y	0.00	0	27	0	27	n	0.00	0	21	0	21	n	0.00	0	39	0	39	n	ENSMUSG00000030727.13	Rabep2	chr7	protein_coding	rabaptin, RAB GTPase binding effector protein 2
novel_NIR_16910	chr7	126072266	126073589	-	126072266	126072651	A5SS&ES	ENSMUST00000205440.2	novel	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.20	1	4	1	4	n	0.20	1	4	1	4	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.20	3	12	3	12	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	ENSMUSG00000030733.11	Sh2b1	chr7	protein_coding	SH2B adaptor protein 1
novel_NIR_16911	chr7	126072266	126073589	-	126072266	126073791	A5SS	ENSMUST00000032978.8	novel	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.10	1	9	1	9	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.20	1	4	1	4	n	0.04	1	22	1	22	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.60	3	2	3	2	y	0.00	0	5	0	5	n	0.00	0	8	0	8	n	ENSMUSG00000030733.11	Sh2b1	chr7	protein_coding	SH2B adaptor protein 1
novel_NIR_16912	chr7	126072266	126073589	-	126072266	126074357	A5SS	ENSMUST00000206643.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.38	3	5	3	5	y	0.00	0	3	0	3	n	0.00	0	7	0	7	n	ENSMUSG00000030733.11	Sh2b1	chr7	protein_coding	SH2B adaptor protein 1
novel_NIR_16913	chr7	126091364	126091621	-	126091387	126091621	A3SS	ENSMUST00000206265.2	novel	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	30	0	30	n	0.00	0	5	0	5	n	0.30	7	16	7	16	y	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.38	3	5	3	5	y	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.17	2	10	2	10	y	ENSMUSG00000032637.16	Atxn2l	chr7	protein_coding	ataxin 2-like
novel_NIR_16914	chr7	126091367	126091621	-	126091387	126091621	A3SS	ENSMUST00000206265.2	novel	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	30	0	30	n	0.00	0	5	0	5	n	0.00	0	16	0	16	n	0.00	0	16	0	16	n	0.14	1	6	1	6	n	0.30	3	7	3	7	y	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.29	4	10	4	10	y	ENSMUSG00000032637.16	Atxn2l	chr7	protein_coding	ataxin 2-like
novel_NIR_16915	chr7	126091387	126091930	-	126091387	126091621	A5SS&ES	ENSMUST00000206265.2	novel	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	30	0	30	n	0.00	0	5	0	5	n	0.00	0	16	0	16	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.33	2	4	2	4	y	0.00	0	7	0	7	n	0.00	0	10	0	10	n	ENSMUSG00000032637.16	Atxn2l	chr7	protein_coding	ataxin 2-like
novel_NIR_16916	chr7	126091387	126091930	-	126091387	126091984	A5SS	ENSMUST00000040202.15	novel	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	25	0	25	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.18	2	9	2	9	y	0.00	0	8	0	8	n	0.00	0	8	0	8	n	ENSMUSG00000032637.16	Atxn2l	chr7	protein_coding	ataxin 2-like
novel_NIR_16917	chr7	126091387	126091930	-	126091387;126091780	126091616;126091930	ES	ENSMUST00000206577.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.80	2	0.5	2	1;0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032637.16	Atxn2l	chr7	protein_coding	ataxin 2-like
novel_NIR_16918	chr7	126091773	126091984	-	126091657	126091984	A3SS	ENSMUST00000206265.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.29	2	5	2	5	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000032637.16	Atxn2l	chr7	protein_coding	ataxin 2-like
novel_NIR_16919	chr7	126287641	126288946	-	126287641	126287728	A5SS&ES	ENSMUST00000122029.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000082922.4	Gm6939	chr7	transcribed_unprocessed_pseudogene	predicted gene 6939
novel_NIR_16920	chr7	126295271	126295358	+	126295271	126295393	A3SS	ENSMUST00000052145.6	novel	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	17	0	17	0	y	1.00	3	0	3	0	y	1.00	9	0	9	0	y	-	-	-	-	-	-	1.00	8	0	8	0	y	1.00	9	0	9	0	y	1.00	8	0	8	0	y	1.00	5	0	5	0	y	1.00	10	0	10	0	y	-	-	-	-	-	-	ENSMUSG00000047721.9	Bola2	chr7	protein_coding	bolA-like 2 (E. coli)
novel_NIR_16921	chr7	12631870	12631963	+	12631870	12637528	A3SS	ENSMUST00000055528.11	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	10	0	10	0	y	0.00	0	1	0	1	n	0.50	4	4	4	4	y	-	-	-	-	-	-	0.50	2	2	2	2	y	1.00	1	0	1	0	n	0.88	7	1	7	1	y	1.00	6	0	6	0	y	ENSMUSG00000054715.12	Zscan22	chr7	protein_coding	zinc finger and SCAN domain containing 22
novel_NIR_16922	chr7	12631870	12631963	+	12631870	12640161	A3SS	ENSMUST00000119989.3	novel	0.25	1	3	1	3	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	1.00	10	0	10	0	y	0.00	0	1	0	1	n	0.36	4	7	4	7	y	0.00	0	4	0	4	n	0.40	2	3	2	3	y	0.25	1	3	1	3	n	1.00	7	0	7	0	y	0.75	6	2	6	2	y	ENSMUSG00000054715.12	Zscan22	chr7	protein_coding	zinc finger and SCAN domain containing 22
novel_NIR_16923	chr7	12631907	12637528	+	12631804	12637528	A5SS	ENSMUST00000120809.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000054715.12	Zscan22	chr7	protein_coding	zinc finger and SCAN domain containing 22
novel_NIR_16924	chr7	12631907	12637528	+	12631870	12637528	A5SS	ENSMUST00000055528.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000054715.12	Zscan22	chr7	protein_coding	zinc finger and SCAN domain containing 22
novel_NIR_16925	chr7	12631907	12637528	+	12631907	12640161	A3SS	ENSMUST00000117189.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.25	2	6	2	6	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.33	2	4	2	4	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.14	1	6	1	6	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000054715.12	Zscan22	chr7	protein_coding	zinc finger and SCAN domain containing 22
novel_NIR_16926	chr7	12631907	12656900	+	12631907	12640161	3pMXE	ENSMUST00000117189.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.25	2	6	2	6	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000054715.12	Zscan22	chr7	protein_coding	zinc finger and SCAN domain containing 22
novel_NIR_16927	chr7	12631907	12656900	+	12656447	12656900	5pMXE	ENSMUST00000137329.4	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.25	2	6	2	6	y	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000012848.16	Rps5	chr7	protein_coding	ribosomal protein S5
novel_NIR_16928	chr7	12631907	12656900	+	12656475	12656900	5pMXE	ENSMUST00000147435.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000012848.16	Rps5	chr7	protein_coding	ribosomal protein S5
novel_NIR_16929	chr7	126387288	126387556	-	126386518	126387556	A3SS	ENSMUST00000205786.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	ENSMUSG00000030697.8	Ppp4c	chr7	protein_coding	protein phosphatase 4, catalytic subunit
novel_NIR_16930	chr7	126387386	126387556	-	126386518	126387556	A3SS	ENSMUST00000205786.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030697.8	Ppp4c	chr7	protein_coding	protein phosphatase 4, catalytic subunit
novel_NIR_16931	chr7	126396943	126399174	-	126397298	126399174	A3SS&ES	ENSMUST00000133514.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.83	5	1	5	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030695.17	Aldoa	chr7	protein_coding	aldolase A, fructose-bisphosphate
novel_NIR_16932	chr7	126452504	126452661	-	126452163	126452661	A3SS	ENSMUST00000206090.2	novel	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000030689.16	Ino80e	chr7	protein_coding	INO80 complex subunit E
novel_NIR_16933	chr7	126466351	126466487	-	126466351	126467282	A5SS	ENSMUST00000214525.2	novel	0.43	12	16	12	16	n	0.57	13	10	13	10	n	0.18	5	23	5	23	n	0.33	9	18	9	18	n	0.22	8	28	8	28	n	0.17	2	10	2	10	y	0.18	5	23	5	23	n	0.27	3	8	3	8	y	0.15	2	11	2	11	n	0.35	13	24	13	24	n	0.15	3	17	3	17	n	0.12	3	23	3	23	n	ENSMUSG00000059981.13	Taok2	chr7	protein_coding	TAO kinase 2
novel_NIR_16934	chr7	126466351;126466593	126466487;126467282	-	126466351	126467282	cassetteExon	ENSMUST00000214525.2	novel	0.40	10.5	16	12;9	16	y	0.49	9.5	10	13;6	10	y	0.22	6.5	23	5;8	23	y	0.32	8.5	18	9;8	18	y	0.15	5.0	28	8;2	28	y	0.09	1.0	10	2;0	10	n	0.21	6.0	23	5;7	23	y	0.16	1.5	8	3;0	8	n	0.12	1.5	11	2;1	11	n	0.33	12.0	24	13;11	24	y	0.21	4.5	17	3;6	17	y	0.23	7.0	23	3;11	23	y	ENSMUSG00000059981.13	Taok2	chr7	protein_coding	TAO kinase 2
novel_NIR_16935	chr7	126469169	126470574	-	126468079	126470574	A3SS	ENSMUST00000214525.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000059981.13	Taok2	chr7	protein_coding	TAO kinase 2
novel_NIR_16936	chr7	126479835	126485380	-	126479835	126483078	5pMXE	ENSMUST00000071268.11	novel	0.67	31	15	31	15	y	0.65	20	11	20	11	y	0.73	19	7	19	7	y	0.78	28	8	28	8	y	0.70	38	16	38	16	y	0.54	7	6	7	6	y	0.74	28	10	28	10	y	0.81	17	4	17	4	y	0.67	18	9	18	9	y	0.52	22	20	22	20	y	0.50	14	14	14	14	y	0.72	33	13	33	13	y	ENSMUSG00000059981.13	Taok2	chr7	protein_coding	TAO kinase 2
novel_NIR_16937	chr7	126485487	126495921	-	126485487	126490775	5pMXE	ENSMUST00000154174.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000060538.15	Tmem219	chr7	protein_coding	transmembrane protein 219
novel_NIR_16938	chr7	126485487	126521982	-	126485487	126490775	5pMXE	ENSMUST00000154174.2	novel	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000060538.15	Tmem219	chr7	protein_coding	transmembrane protein 219
novel_NIR_16939	chr7	126496110	126497969	-	126496110	126497396	5pMXE	ENSMUST00000145307.2	novel	0.89	8	1	8	1	y	1.00	9	0	9	0	y	-	-	-	-	-	-	1.00	15	0	15	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	11	0	11	0	y	-	-	-	-	-	-	0.86	6	1	6	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	7	0	7	0	y	ENSMUSG00000060538.15	Tmem219	chr7	protein_coding	transmembrane protein 219
novel_NIR_16940	chr7	126496110	126497969	-	126496110	126521982	A5SS	ENSMUST00000121612.4	novel	0.73	8	3	8	3	n	0.82	9	2	9	2	y	0.00	0	2	0	2	n	0.88	15	2	15	2	y	-	-	-	-	-	-	0.20	1	4	1	4	n	0.92	11	1	11	1	y	-	-	-	-	-	-	1.00	6	0	6	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.70	7	3	7	3	n	ENSMUSG00000060538.15	Tmem219	chr7	protein_coding	transmembrane protein 219
novel_NIR_16941	chr7	126496110	126497969	-	126496110;126496396	126496198;126497969	ES	ENSMUST00000119781.8	novel	0.10	8	73.0	8	126;20	n	0.12	9	65.0	9	114;16	n	0.00	0	60.5	0	104;17	n	0.16	15	78.5	15	133;24	y	0.00	0	93.5	0	158;29	n	0.02	1	47.0	1	81;13	n	0.10	11	100.5	11	170;31	n	0.00	0	54.5	0	98;11	n	0.08	6	70.0	6	124;16	n	0.00	0	104.5	0	186;23	n	0.00	0	87.0	0	145;29	n	0.05	7	126.5	7	218;35	n	ENSMUSG00000060538.15	Tmem219	chr7	protein_coding	transmembrane protein 219
novel_NIR_16942	chr7	126497555	126497969	-	126496396	126497969	A3SS	ENSMUST00000119781.8	novel	0.13	3	20	3	20	n	0.00	0	16	0	16	n	0.19	4	17	4	17	y	0.08	2	24	2	24	n	0.26	10	29	10	29	y	0.00	0	13	0	13	n	0.06	2	31	2	31	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.15	4	23	4	23	y	0.17	6	29	6	29	y	0.12	5	35	5	35	n	ENSMUSG00000060538.15	Tmem219	chr7	protein_coding	transmembrane protein 219
novel_NIR_16943	chr7	126498339	126521982	-	126496110	126521982	A3SS	ENSMUST00000121612.4	novel	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	1.00	6	0	6	0	y	0.25	1	3	1	3	n	ENSMUSG00000060538.15	Tmem219	chr7	protein_coding	transmembrane protein 219
novel_NIR_16944	chr7	126566377	126566511	+	126566377	126566879	A3SS	ENSMUST00000106333.8	novel	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000030683.12	Sez6l2	chr7	protein_coding	seizure related 6 homolog like 2
novel_NIR_16945	chr7	126566377	126566511	+	126566377	126567099	A3SS	ENSMUST00000106335.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030683.12	Sez6l2	chr7	protein_coding	seizure related 6 homolog like 2
novel_NIR_16946	chr7	126578168	126578473	+	126578168	126578430	A3SS	ENSMUST00000206170.2	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.67	4	2	4	2	y	1.00	2	0	2	0	y	0.86	6	1	6	1	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	1.00	3	0	3	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000030682.5	Cdipt	chr7	protein_coding	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)
novel_NIR_16947	chr7	126578168	126578473	+	126578168	126578477	A3SS	ENSMUST00000206346.2	novel	0.50	2	2	2	2	y	0.25	1	3	1	3	n	0.80	4	1	4	1	y	0.40	2	3	2	3	y	1.00	6	0	6	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000030682.5	Cdipt	chr7	protein_coding	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)
novel_NIR_16948	chr7	126578168	126578473	+	126578168	126578707	A3SS	ENSMUST00000206450.2	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000030682.5	Cdipt	chr7	protein_coding	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)
novel_NIR_16949	chr7	126622340	126622649	-	126622340	126622654	A5SS	ENSMUST00000205568.2	novel	0.54	20	17	20	17	y	0.68	23	11	23	11	y	0.70	26	11	26	11	y	0.69	24	11	24	11	y	0.67	28	14	28	14	y	0.56	9	7	9	7	y	0.62	20	12	20	12	y	0.67	10	5	10	5	y	0.59	23	16	23	16	y	0.55	28	23	28	23	y	0.63	12	7	12	7	y	0.69	22	10	22	10	y	ENSMUSG00000030678.8	Maz	chr7	protein_coding	MYC-associated zinc finger protein (purine-binding transcription factor)
novel_NIR_16950	chr7	126622340	126622649	-	126622340	126623616	A5SS	ENSMUST00000032916.6	novel	0.16	20	109	20	109	y	0.21	23	87	23	87	y	0.15	26	146	26	146	y	0.19	24	102	24	102	y	0.18	28	129	28	129	y	0.15	9	53	9	53	y	0.15	20	113	20	113	y	0.18	10	46	10	46	y	0.26	23	66	23	66	y	0.23	28	95	28	95	y	0.13	12	80	12	80	n	0.16	22	115	22	115	y	ENSMUSG00000030678.8	Maz	chr7	protein_coding	MYC-associated zinc finger protein (purine-binding transcription factor)
novel_NIR_16951	chr7	126622340	126622798	-	126622340	126622654	A5SS	ENSMUST00000205568.2	novel	0.15	3	17	3	17	y	0.00	0	11	0	11	n	0.08	1	11	1	11	n	0.00	0	11	0	11	n	0.18	3	14	3	14	y	0.12	1	7	1	7	n	0.08	1	12	1	12	n	0.00	0	5	0	5	n	0.00	0	16	0	16	n	0.00	0	23	0	23	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	ENSMUSG00000030678.8	Maz	chr7	protein_coding	MYC-associated zinc finger protein (purine-binding transcription factor)
novel_NIR_16952	chr7	126633225	126634368	+	126631141	126634368	A5SS	ENSMUST00000206873.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000108617.2	Gm31749	chr7	lncRNA	predicted gene, 31749
novel_NIR_16953	chr7	126708218	126721145	-	126715391	126721145	3pMXE	ENSMUST00000142403.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030674.6	Qprt	chr7	protein_coding	quinolinate phosphoribosyltransferase
novel_NIR_16954	chr7	126708218	126721145	-	126717489	126721145	A3SS&ES	ENSMUST00000129332.2	novel	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000030674.6	Qprt	chr7	protein_coding	quinolinate phosphoribosyltransferase
novel_NIR_16955	chr7	126708416	126720554	-	126708416	126717325	A5SS&ES	ENSMUST00000129332.2	novel	0.00	0	5	0	5	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.50	2	2	2	2	y	1.00	1	0	1	0	n	0.20	1	4	1	4	n	0.50	1	1	1	1	n	0.50	1	1	1	1	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.25	1	3	1	3	n	ENSMUSG00000030674.6	Qprt	chr7	protein_coding	quinolinate phosphoribosyltransferase
novel_NIR_16956	chr7	126808529	126812033	+	126808123	126812033	A5SS	ENSMUST00000206772.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000030672.13	Mylpf	chr7	protein_coding	myosin light chain, phosphorylatable, fast skeletal muscle
novel_NIR_16957	chr7	126808529	126812033	+	126810935	126812033	A5SS&ES	ENSMUST00000206204.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	759	0	759	n	0.50	3	3	3	3	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000030672.13	Mylpf	chr7	protein_coding	myosin light chain, phosphorylatable, fast skeletal muscle
novel_NIR_16958	chr7	126808529	126812033	+	126811879	126812033	5pMXE	ENSMUST00000127710.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000030672.13	Mylpf	chr7	protein_coding	myosin light chain, phosphorylatable, fast skeletal muscle
novel_NIR_16959	chr7	126808570	126810924	+	126808570	126810921	A3SS	ENSMUST00000206204.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000030672.13	Mylpf	chr7	protein_coding	myosin light chain, phosphorylatable, fast skeletal muscle
novel_NIR_16960	chr7	126843780	126844144	+	126843780	126844157	A3SS	ENSMUST00000052509.6	novel	0.04	1	22	1	22	n	0.00	0	22	0	22	n	0.18	7	32	7	32	y	0.03	1	37	1	37	n	0.05	3	58	3	58	n	0.00	0	12	0	12	n	0.00	0	46	0	46	n	0.00	0	21	0	21	n	0.03	1	37	1	37	n	0.11	8	67	8	67	n	0.05	2	40	2	40	n	0.00	0	46	0	46	n	ENSMUSG00000054716.5	Zfp771	chr7	protein_coding	zinc finger protein 771
novel_NIR_16961	chr7	126927727	126927828	+	126927727	126927825	A3SS	ENSMUST00000117762.8	novel	0.00	0	12	0	12	n	0.07	1	13	1	13	n	0.20	2	8	2	8	y	0.00	0	13	0	13	n	0.14	2	12	2	12	n	0.11	1	8	1	8	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.07	1	13	1	13	n	0.21	3	11	3	11	y	0.21	3	11	3	11	y	0.00	0	10	0	10	n	ENSMUSG00000030830.19	Itgal	chr7	protein_coding	integrin alpha L
novel_NIR_16962	chr7	126992283	126992462	-	126992283	126992425	A5SS	ENSMUST00000106303.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000078580.4	E430018J23Rik	chr7	protein_coding	RIKEN cDNA E430018J23 gene
novel_NIR_16963	chr7	126992283	126992462	-	126992286	126992462	A3SS	ENSMUST00000074249.7	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.14	1	6	1	6	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000078580.4	E430018J23Rik	chr7	protein_coding	RIKEN cDNA E430018J23 gene
novel_NIR_16964	chr7	126992286	126992380	-	126992286	126992425	A5SS	ENSMUST00000165495.2	novel	0.38	3	5	3	5	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.60	3	2	3	2	y	0.30	3	7	3	7	y	1.00	1	0	1	0	n	0.60	3	2	3	2	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.33	4	8	4	8	y	0.40	2	3	2	3	y	ENSMUSG00000078580.4	E430018J23Rik	chr7	protein_coding	RIKEN cDNA E430018J23 gene
novel_NIR_16965	chr7	126992286	126992380	-	126992286	126992462	A5SS	ENSMUST00000074249.7	novel	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.60	3	2	3	2	y	0.75	3	1	3	1	y	1.00	1	0	1	0	n	0.60	3	2	3	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.14	1	6	1	6	n	0.80	4	1	4	1	y	0.50	2	2	2	2	y	ENSMUSG00000078580.4	E430018J23Rik	chr7	protein_coding	RIKEN cDNA E430018J23 gene
novel_NIR_16966	chr7	127018813	127020821	-	127018813	127019182	A5SS&ES	ENSMUST00000148483.8	novel	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.38	3	5	3	5	y	0.00	0	20	0	20	n	0.00	0	3	0	3	n	0.00	0	22	0	22	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.19	3	13	3	13	y	0.00	0	12	0	12	n	ENSMUSG00000045251.14	Zfp688	chr7	protein_coding	zinc finger protein 688
novel_NIR_16967	chr7	127018813	127020821	-	127018813	127020577	A5SS	ENSMUST00000136123.8	novel	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.33	3	6	3	6	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.30	3	7	3	7	y	0.00	0	4	0	4	n	ENSMUSG00000045251.14	Zfp688	chr7	protein_coding	zinc finger protein 688
novel_NIR_16968	chr7	127018813	127020821	-	127018813	127020981	A5SS	ENSMUST00000126756.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.00	0	3	0	3	n	ENSMUSG00000045251.14	Zfp688	chr7	protein_coding	zinc finger protein 688
novel_NIR_16969	chr7	127018813;127020868	127020821;127020981	-	127018813	127020981	cassetteExon	ENSMUST00000126756.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2.5	0	3;2	0	y	0.00	0.0	2	0;0	2	n	-	-	-	-	-	-	0.00	0.0	2	0;0	2	n	0.00	0.0	1	0;0	1	n	0.00	0.0	2	0;0	2	n	0.00	0.0	2	0;0	2	n	1.00	1.5	0	3;0	0	n	0.00	0.0	3	0;0	3	n	ENSMUSG00000045251.14	Zfp688	chr7	protein_coding	zinc finger protein 688
novel_NIR_16970	chr7	127018813;127020868	127020821;127020981	-	127018813;127020690	127020577;127020981	MXE	ENSMUST00000106300.2	novel	0.00	0.0	0.5	0;0	1;0	n	0.00	0.0	6.0	0;0	5;7	n	0.00	0.0	8.0	0;0	10;6	n	0.29	2.5	6.0	3;2	6;6	y	0.00	0.0	5.5	0;0	4;7	n	0.00	0.0	3.0	0;0	5;1	n	0.00	0.0	6.5	0;0	7;6	n	0.00	0.0	5.0	0;0	5;5	n	0.00	0.0	4.0	0;0	5;3	n	0.00	0.0	3.5	0;0	3;4	n	0.25	1.5	4.5	3;0	7;2	n	0.00	0.0	3.0	0;0	4;2	n	ENSMUSG00000045251.14	Zfp688	chr7	protein_coding	zinc finger protein 688
novel_NIR_16971	chr7	127020690	127020821	-	127020690	127020795	A5SS	ENSMUST00000148483.8	novel	0.36	4	7	4	7	y	0.20	1	4	1	4	n	0.56	5	4	5	4	y	0.50	3	3	3	3	y	0.29	2	5	2	5	y	0.50	1	1	1	1	n	0.67	4	2	4	2	y	0.33	1	2	1	2	n	1.00	5	0	5	0	y	0.00	0	5	0	5	n	0.50	3	3	3	3	y	0.25	1	3	1	3	n	ENSMUSG00000045251.14	Zfp688	chr7	protein_coding	zinc finger protein 688
novel_NIR_16972	chr7	127020690	127020821	-	127020690	127020981	A5SS	ENSMUST00000106300.2	novel	1.00	4	0	4	0	y	0.12	1	7	1	7	n	0.45	5	6	5	6	y	0.33	3	6	3	6	n	0.22	2	7	2	7	y	0.50	1	1	1	1	n	0.40	4	6	4	6	y	0.17	1	5	1	5	n	0.62	5	3	5	3	y	0.00	0	4	0	4	n	0.60	3	2	3	2	y	0.33	1	2	1	2	n	ENSMUSG00000045251.14	Zfp688	chr7	protein_coding	zinc finger protein 688
novel_NIR_16973	chr7	127020690;127020868	127020821;127020981	-	127020690	127020981	cassetteExon	ENSMUST00000106300.2	novel	1.00	2.0	0	4;0	0	n	0.07	0.5	7	1;0	7	n	0.29	2.5	6	5;0	6	n	0.29	2.5	6	3;2	6	y	0.12	1.0	7	2;0	7	n	0.33	0.5	1	1;0	1	n	0.25	2.0	6	4;0	6	n	0.09	0.5	5	1;0	5	n	0.45	2.5	3	5;0	3	n	0.00	0.0	4	0;0	4	n	0.43	1.5	2	3;0	2	n	0.20	0.5	2	1;0	2	n	ENSMUSG00000045251.14	Zfp688	chr7	protein_coding	zinc finger protein 688
novel_NIR_16974	chr7	127056288	127058687	+	127048743	127058687	A5SS	ENSMUST00000144796.2	novel	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000086502.2	B130055M24Rik	chr7	lncRNA	RIKEN cDNA B130055M24 gene
novel_NIR_16975	chr7	127069595	127070124	+	127069595	127069724	A3SS	ENSMUST00000128805.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030822.16	Prr14	chr7	protein_coding	proline rich 14
novel_NIR_16976	chr7	127069595	127070124	+	127069595	127070157	A3SS	ENSMUST00000106292.8	novel	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	ENSMUSG00000030822.16	Prr14	chr7	protein_coding	proline rich 14
novel_NIR_16977	chr7	127075465	127075531	+	127075465	127075616	A3SS	ENSMUST00000206915.2	novel	0.14	1	6	1	6	n	0.22	2	7	2	7	y	0.00	0	8	0	8	n	0.09	1	10	1	10	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	11	0	11	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.40	2	3	2	3	y	ENSMUSG00000030822.16	Prr14	chr7	protein_coding	proline rich 14
novel_NIR_16978	chr7	127080074	127081955	+	127079287	127081955	A5SS	ENSMUST00000206394.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000042423.10	Fbrs	chr7	protein_coding	fibrosin
novel_NIR_16979	chr7	127111510	127115114	+	127111510;127113412	127113337;127115114	ES	ENSMUST00000185401.7	novel	0.00	0	6.5	0	7;6	n	0.00	0	3.0	0	3;3	n	0.00	0	6.0	0	5;7	n	0.00	0	6.0	0	9;3	n	0.07	1	13.0	1	13;13	n	0.00	0	5.0	0	2;8	n	0.24	2	6.5	2	9;4	y	0.12	1	7.0	1	8;6	n	0.00	0	2.5	0	0;5	n	0.00	0	10.5	0	9;12	n	0.50	2	2.0	2	2;2	y	0.11	2	17.0	2	18;16	n	ENSMUSG00000053877.13	Srcap	chr7	protein_coding	Snf2-related CREBBP activator protein
novel_NIR_16980	chr7	127139053	127139828	+	127139605	127139828	A5SS&ES	ENSMUST00000187040.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000053877.13	Srcap	chr7	protein_coding	Snf2-related CREBBP activator protein
novel_NIR_16981	chr7	127139097	127139828	+	127139605	127139828	A5SS&ES	ENSMUST00000187040.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.20	1	4	1	4	n	1.00	2	0	2	0	y	0.50	1	1	1	1	n	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000053877.13	Srcap	chr7	protein_coding	Snf2-related CREBBP activator protein
novel_NIR_16982	chr7	127162464	127163813	+	127162464	127165904	A3SS	ENSMUST00000190278.3	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000106715.4	Tmem265	chr7	protein_coding	transmembrane protein 265
novel_NIR_16983	chr7	127176860	127177147	+	127176818	127177147	A5SS	ENSMUST00000154891.8	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	6	0	6	n	ENSMUSG00000030815.12	Phkg2	chr7	protein_coding	phosphorylase kinase, gamma 2 (testis)
novel_NIR_16984	chr7	127176860	127177147	+	127176860	127178839	A3SS	ENSMUST00000146383.8	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.67	2	1	2	1	y	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	ENSMUSG00000030815.12	Phkg2	chr7	protein_coding	phosphorylase kinase, gamma 2 (testis)
novel_NIR_16985	chr7	127176882	127178839	+	127176818	127178839	A5SS	ENSMUST00000205633.2	novel	0.50	3	3	3	3	y	0.00	0	8	0	8	n	1.00	3	0	3	0	y	0.25	2	6	2	6	y	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.11	1	8	1	8	n	0.00	0	2	0	2	n	0.00	0	15	0	15	n	0.11	1	8	1	8	n	0.38	3	5	3	5	y	ENSMUSG00000030815.12	Phkg2	chr7	protein_coding	phosphorylase kinase, gamma 2 (testis)
novel_NIR_16986	chr7	127176882	127178839	+	127176860	127178839	A5SS	ENSMUST00000146383.8	novel	0.50	3	3	3	3	y	0.00	0	4	0	4	n	0.50	3	3	3	3	y	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.00	0	5	0	5	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.50	1	1	1	1	n	0.33	3	6	3	6	y	ENSMUSG00000030815.12	Phkg2	chr7	protein_coding	phosphorylase kinase, gamma 2 (testis)
novel_NIR_16987	chr7	127187983	127188080	+	127187983	127188097	A3SS	ENSMUST00000205694.2	novel	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	21	0	21	n	0.00	0	21	0	21	n	0.06	1	17	1	17	n	0.00	0	4	0	4	n	0.00	0	15	0	15	n	0.00	0	17	0	17	n	0.00	0	13	0	13	n	0.00	0	20	0	20	n	0.17	2	10	2	10	y	0.00	0	11	0	11	n	ENSMUSG00000030816.9	Rnf40	chr7	protein_coding	ring finger protein 40
novel_NIR_16988	chr7	127191009	127191744	+	127191009	127191969	A3SS	ENSMUST00000033088.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000030816.9	Rnf40	chr7	protein_coding	ring finger protein 40
novel_NIR_16989	chr7	127191009	127191744	+	127191009	127193779	A3SS	ENSMUST00000206914.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000030816.9	Rnf40	chr7	protein_coding	ring finger protein 40
novel_NIR_16990	chr7	127206672	127211839	-	127208006	127211839	3pMXE	ENSMUST00000151107.8	novel	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.50	2	2	2	2	y	1.00	1	0	1	0	n	ENSMUSG00000045639.15	Zfp629	chr7	protein_coding	zinc finger protein 629
novel_NIR_16991	chr7	127206672	127211839	-	127211734	127211839	A3SS	ENSMUST00000058038.12	novel	0.00	0	1	0	1	n	0.17	1	5	1	5	n	0.00	0	9	0	9	n	0.12	1	7	1	7	n	0.11	1	8	1	8	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.12	2	14	2	14	n	0.18	2	9	2	9	y	0.10	1	9	1	9	n	ENSMUSG00000045639.15	Zfp629	chr7	protein_coding	zinc finger protein 629
novel_NIR_16992	chr7	127206672	127211839	-	127211753	127211839	3pMXE	ENSMUST00000128731.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000045639.15	Zfp629	chr7	protein_coding	zinc finger protein 629
novel_NIR_16993	chr7	12730291	12731305	-	12728965	12731305	A3SS	ENSMUST00000133977.3	novel	-	-	-	-	-	-	0.55	6	5	6	5	y	0.90	28	3	28	3	y	-	-	-	-	-	-	1.00	13	0	13	0	y	0.50	4	4	4	4	y	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	14	0	14	n	0.60	9	6	9	6	y	0.53	9	8	9	8	y	0.83	25	5	25	5	y	ENSMUSG00000030382.16	Slc27a5	chr7	protein_coding	solute carrier family 27 (fatty acid transporter), member 5
novel_NIR_16994	chr7	127306476	127306605	-	127306476	127307052	A5SS	ENSMUST00000106282.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	ENSMUSG00000030814.18	Bcl7c	chr7	protein_coding	B cell CLL/lymphoma 7C
novel_NIR_16995	chr7	127313219	127316176	+	127313215	127316176	A5SS	ENSMUST00000047393.7	novel	0.00	0	6	0	6	n	0.30	3	7	3	7	y	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	35	0	35	n	0.05	1	20	1	20	n	0.04	1	24	1	24	n	0.08	1	12	1	12	n	0.00	0	13	0	13	n	0.05	1	21	1	21	n	0.00	0	20	0	20	n	0.04	1	22	1	22	n	ENSMUSG00000042340.7	Ctf1	chr7	protein_coding	cardiotrophin 1
novel_NIR_16996	chr7	12733159	12756479	+	12733159	12759231	A3SS	ENSMUST00000209577.2	novel	0.14	1	6	1	6	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	24	0	24	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	7	0	7	n	-	-	-	-	-	-	0.08	1	11	1	11	n	0.33	3	6	3	6	y	0.00	0	5	0	5	n	0.12	1	7	1	7	n	ENSMUSG00000005566.15	Trim28	chr7	protein_coding	tripartite motif-containing 28
novel_NIR_16997	chr7	127343956	127344308	+	127343956	127347422	A3SS	ENSMUST00000205689.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000030811.15	Fbxl19	chr7	protein_coding	F-box and leucine-rich repeat protein 19
novel_NIR_16998	chr7	127372972	127373829	+	127372972	127373743	A3SS	ENSMUST00000118865.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000043964.15	Orai3	chr7	protein_coding	ORAI calcium release-activated calcium modulator 3
novel_NIR_16999	chr7	127400203	127400299	+	127398652	127400299	A5SS	ENSMUST00000154987.8	novel	0.00	0	1	0	1	n	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000108815.2	Gm49388	chr7	protein_coding	predicted gene, 49388
novel_NIR_17000	chr7	127400203	127400299	+	127400222	127400299	A5SS	ENSMUST00000138432.2	novel	0.00	0	5	0	5	n	0.62	5	3	5	3	y	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.12	1	7	1	7	n	ENSMUSG00000042289.12	Hsd3b7	chr7	protein_coding	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
novel_NIR_17001	chr7	127400417	127400633	+	127400535	127400633	A5SS	ENSMUST00000124631.8	novel	0.00	0	29	0	29	n	0.00	0	19	0	19	n	0.00	0	42	0	42	n	0.00	0	13	0	13	n	0.00	0	40	0	40	n	0.00	0	24	0	24	n	0.00	0	24	0	24	n	0.15	4	23	4	23	y	0.00	0	18	0	18	n	0.00	0	32	0	32	n	0.00	0	18	0	18	n	0.00	0	30	0	30	n	ENSMUSG00000042289.12	Hsd3b7	chr7	protein_coding	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
novel_NIR_17002	chr7	127400418	127400523	+	127400418	127400564	A3SS	ENSMUST00000155005.3	novel	0.25	3	9	3	9	y	0.07	1	14	1	14	n	0.00	0	7	0	7	n	0.35	7	13	7	13	y	0.15	6	34	6	34	y	0.25	3	9	3	9	y	0.21	5	19	5	19	y	0.00	0	16	0	16	n	0.11	2	16	2	16	n	0.28	9	23	9	23	y	0.07	1	14	1	14	n	0.12	2	14	2	14	n	ENSMUSG00000042289.12	Hsd3b7	chr7	protein_coding	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
novel_NIR_17003	chr7	127400418	127400523	+	127400418	127401006	A3SS	ENSMUST00000139068.8	novel	0.50	3	3	3	3	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.78	7	2	7	2	y	0.86	6	1	6	1	y	0.50	3	3	3	3	y	0.50	5	5	5	5	y	0.00	0	5	0	5	n	0.50	2	2	2	2	y	0.69	9	4	9	4	y	1.00	1	0	1	0	n	0.50	2	2	2	2	y	ENSMUSG00000042289.12	Hsd3b7	chr7	protein_coding	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
novel_NIR_17004	chr7	127400418	127400523	+	127400418	127401186	A3SS	ENSMUST00000206674.2	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	7	0	7	0	y	0.75	6	2	6	2	y	1.00	3	0	3	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	9	0	9	0	y	1.00	1	0	1	0	n	0.40	2	3	2	3	y	ENSMUSG00000042289.12	Hsd3b7	chr7	protein_coding	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
novel_NIR_17005	chr7	127400418	127400527	+	127400418	127401006	A3SS	ENSMUST00000139068.8	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.43	3	4	3	4	y	-	-	-	-	-	-	0.33	1	2	1	2	n	ENSMUSG00000042289.12	Hsd3b7	chr7	protein_coding	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
novel_NIR_17006	chr7	127400418	127400527	+	127400418	127401186	A3SS	ENSMUST00000206674.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.25	1	3	1	3	n	ENSMUSG00000042289.12	Hsd3b7	chr7	protein_coding	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
novel_NIR_17007	chr7	127400418	127400644	+	127400418	127400564	A3SS	ENSMUST00000155005.3	novel	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	34	0	34	n	0.00	0	9	0	9	n	0.00	0	19	0	19	n	0.00	0	16	0	16	n	0.00	0	16	0	16	n	0.00	0	23	0	23	n	0.00	0	14	0	14	n	0.56	18	14	18	14	y	ENSMUSG00000042289.12	Hsd3b7	chr7	protein_coding	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
novel_NIR_17008	chr7	127400418	127400644	+	127400418	127401006	A3SS	ENSMUST00000139068.8	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.90	18	2	18	2	y	ENSMUSG00000042289.12	Hsd3b7	chr7	protein_coding	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
novel_NIR_17009	chr7	127400418	127400644	+	127400418	127401186	A3SS	ENSMUST00000206674.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.86	18	3	18	3	y	ENSMUSG00000042289.12	Hsd3b7	chr7	protein_coding	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
novel_NIR_17010	chr7	127400418	127401197	+	127400418	127400564	A3SS&ES	ENSMUST00000155005.3	novel	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.30	3	7	3	7	y	0.00	0	13	0	13	n	0.00	0	34	0	34	n	0.00	0	9	0	9	n	0.00	0	19	0	19	n	0.00	0	16	0	16	n	0.00	0	16	0	16	n	0.00	0	23	0	23	n	0.00	0	14	0	14	n	0.00	0	14	0	14	n	ENSMUSG00000042289.12	Hsd3b7	chr7	protein_coding	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
novel_NIR_17011	chr7	127400418	127401197	+	127400418	127401006	A3SS&ES	ENSMUST00000139068.8	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.50	3	3	3	3	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000042289.12	Hsd3b7	chr7	protein_coding	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
novel_NIR_17012	chr7	127400418	127401197	+	127400418	127401186	A3SS	ENSMUST00000206674.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000042289.12	Hsd3b7	chr7	protein_coding	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
novel_NIR_17013	chr7	127401373	127401469	+	127401373	127401501	A3SS	ENSMUST00000206674.2	novel	0.71	5	2	5	2	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.54	7	6	7	6	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000042289.12	Hsd3b7	chr7	protein_coding	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
novel_NIR_17014	chr7	127405089	127406828	-	127406561	127406828	A3SS	ENSMUST00000106267.5	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.20	1	4	1	4	n	0.25	1	3	1	3	n	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	0.17	1	5	1	5	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000030806.7	Stx1b	chr7	protein_coding	syntaxin 1B
novel_NIR_17015	chr7	127414592	127414787	-	127414592	127423432	A5SS	ENSMUST00000106267.5	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030806.7	Stx1b	chr7	protein_coding	syntaxin 1B
novel_NIR_17016	chr7	127414592	127415113	-	127414592	127423432	A5SS	ENSMUST00000106267.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000030806.7	Stx1b	chr7	protein_coding	syntaxin 1B
novel_NIR_17017	chr7	127414592	127415303	-	127414592	127423432	A5SS	ENSMUST00000106267.5	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030806.7	Stx1b	chr7	protein_coding	syntaxin 1B
novel_NIR_17018	chr7	127441537	127441623	+	127441537	127441595	A3SS	ENSMUST00000156537.8	novel	0.50	1	1	1	1	n	0.62	5	3	5	3	y	0.00	0	5	0	5	n	1.00	5	0	5	0	y	0.55	6	5	6	5	y	0.00	0	2	0	2	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000030805.15	Stx4a	chr7	protein_coding	syntaxin 4A (placental)
novel_NIR_17019	chr7	127447670	127447877	+	127447670	127447923	A3SS	ENSMUST00000152310.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000030805.15	Stx4a	chr7	protein_coding	syntaxin 4A (placental)
novel_NIR_17020	chr7	127447670	127447939	+	127447670	127447923	A3SS	ENSMUST00000152310.8	novel	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000030805.15	Stx4a	chr7	protein_coding	syntaxin 4A (placental)
novel_NIR_17021	chr7	127476384	127477132	+	127476384	127477075	A3SS	ENSMUST00000131000.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000049739.11	Zfp646	chr7	protein_coding	zinc finger protein 646
novel_NIR_17022	chr7	127493786	127494417	-	127493786	127494355	A5SS	ENSMUST00000206053.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000096145.3	Vkorc1	chr7	protein_coding	vitamin K epoxide reductase complex, subunit 1
novel_NIR_17023	chr7	127493786	127494417	-	127493786	127494459	A5SS	ENSMUST00000119922.2	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000096145.3	Vkorc1	chr7	protein_coding	vitamin K epoxide reductase complex, subunit 1
novel_NIR_17024	chr7	127507251	127507400	+	127507251	127507406	A3SS	ENSMUST00000206068.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030802.15	Bckdk	chr7	protein_coding	branched chain ketoacid dehydrogenase kinase
novel_NIR_17025	chr7	127512020	127514400	+	127511914	127514400	A5SS	ENSMUST00000206071.2	novel	0.03	1	38	1	38	n	0.04	1	23	1	23	n	0.09	5	51	5	51	n	0.07	3	43	3	43	n	0.07	3	41	3	41	n	0.15	5	29	5	29	y	0.08	5	56	5	56	n	0.11	3	25	3	25	n	0.00	0	36	0	36	n	0.02	1	46	1	46	n	0.05	2	40	2	40	n	0.09	4	41	4	41	n	ENSMUSG00000030801.11	Kat8	chr7	protein_coding	K(lysine) acetyltransferase 8
novel_NIR_17026	chr7	127512020	127514400	+	127513654	127514400	5pMXE	ENSMUST00000205357.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	5	0	5	0	y	1.00	5	0	5	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	4	0	4	0	y	ENSMUSG00000030801.11	Kat8	chr7	protein_coding	K(lysine) acetyltransferase 8
novel_NIR_17027	chr7	127512391	127514400	+	127513654	127514400	5pMXE	ENSMUST00000205357.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030801.11	Kat8	chr7	protein_coding	K(lysine) acetyltransferase 8
novel_NIR_17028	chr7	127532664	127532926	-	127532664	127533682	A5SS	ENSMUST00000141385.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000070371.12	Prss36	chr7	protein_coding	protease, serine 36
novel_NIR_17029	chr7	127532664;127533004	127532926;127533562	-	127532664	127533562	cassetteExon	ENSMUST00000150591.8	novel	-	-	-	-	-	-	0.14	0.5	3	0;1	3	n	-	-	-	-	-	-	0.43	1.5	2	0;3	2	n	0.00	0.0	1	0;0	1	n	0.00	0.0	3	0;0	3	n	1.00	0.5	0	1;0	0	n	0.33	2.0	4	0;4	4	n	0.67	2.0	1	2;2	1	y	0.20	1.0	4	0;2	4	n	1.00	0.5	0	1;0	0	n	0.14	0.5	3	0;1	3	n	ENSMUSG00000070371.12	Prss36	chr7	protein_coding	protease, serine 36
novel_NIR_17030	chr7	127532664;127533004	127532926;127533562	-	127532664;127533452	127533311;127533562	MXE	ENSMUST00000152697.3	novel	0.00	0.0	7.5	0;0	2;13	n	0.08	0.5	6.0	0;1	1;11	n	0.00	0.0	1.5	0;0	2;1	n	0.21	1.5	5.5	0;3	2;9	n	0.00	0.0	10.0	0;0	7;13	n	0.00	0.0	7.0	0;0	4;10	n	0.08	0.5	5.5	1;0	0;11	n	0.44	2.0	2.5	0;4	2;3	n	0.21	2.0	7.5	2;2	1;14	y	0.10	1.0	9.5	0;2	0;19	n	0.07	0.5	7.0	1;0	2;12	n	0.05	0.5	10.0	0;1	2;18	n	ENSMUSG00000070371.12	Prss36	chr7	protein_coding	protease, serine 36
novel_NIR_17031	chr7	127533004	127533562	-	127532664	127533562	A3SS	ENSMUST00000150591.8	novel	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	0.60	3	2	3	2	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.50	4	4	4	4	y	0.67	2	1	2	1	n	0.33	2	4	2	4	y	-	-	-	-	-	-	0.25	1	3	1	3	n	ENSMUSG00000070371.12	Prss36	chr7	protein_coding	protease, serine 36
novel_NIR_17032	chr7	127533004	127533562	-	127533004	127533682	A5SS	ENSMUST00000153110.8	novel	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.60	3	2	3	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	4	2	4	2	y	0.50	2	2	2	2	y	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.25	1	3	1	3	n	ENSMUSG00000070371.12	Prss36	chr7	protein_coding	protease, serine 36
novel_NIR_17033	chr7	127533004	127533562	-	127533004;127533452	127533311;127533562	ES	ENSMUST00000118755.8	novel	0.00	0	13.5	0	14;13	n	0.11	1	8.5	1	6;11	n	0.00	0	1.5	0	2;1	n	0.24	3	9.5	3	10;9	y	0.00	0	9.5	0	6;13	n	0.00	0	8.0	0	6;10	n	0.00	0	11.5	0	12;11	n	0.53	4	3.5	4	4;3	y	0.11	2	16.0	2	18;14	n	0.11	2	15.5	2	12;19	n	0.00	0	9.5	0	7;12	n	0.05	1	17.5	1	17;18	n	ENSMUSG00000070371.12	Prss36	chr7	protein_coding	protease, serine 36
novel_NIR_17034	chr7	127533004	127533562	-	127533452	127533562	A3SS&ES	ENSMUST00000152697.3	novel	0.00	0	13	0	13	n	0.08	1	11	1	11	n	0.00	0	1	0	1	n	0.25	3	9	3	9	y	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.57	4	3	4	3	y	0.12	2	14	2	14	n	0.10	2	19	2	19	n	0.00	0	12	0	12	n	0.05	1	18	1	18	n	ENSMUSG00000070371.12	Prss36	chr7	protein_coding	protease, serine 36
novel_NIR_17035	chr7	127533452	127533682	-	127532664	127533682	A3SS	ENSMUST00000141385.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	ENSMUSG00000070371.12	Prss36	chr7	protein_coding	protease, serine 36
novel_NIR_17036	chr7	127533452	127533682	-	127533004	127533682	A3SS	ENSMUST00000153110.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.60	3	2	3	2	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	ENSMUSG00000070371.12	Prss36	chr7	protein_coding	protease, serine 36
novel_NIR_17037	chr7	127533452	127533682	-	127533452	127533562	A5SS	ENSMUST00000152697.3	novel	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	1	0	1	n	0.10	1	9	1	9	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.18	3	14	3	14	y	0.00	0	19	0	19	n	0.00	0	12	0	12	n	0.05	1	18	1	18	n	ENSMUSG00000070371.12	Prss36	chr7	protein_coding	protease, serine 36
novel_NIR_17038	chr7	12766277	12766360	-	12766277	12767756	A5SS	ENSMUST00000211369.2	novel	0.00	0	1	0	1	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.60	3	2	3	2	y	0.33	1	2	1	2	n	-	-	-	-	-	-	ENSMUSG00000033916.6	Chmp2a	chr7	protein_coding	charged multivesicular body protein 2A
novel_NIR_17039	chr7	127842644	127843304	+	127842644	127843197	A3SS	ENSMUST00000044660.6	novel	0.00	0	19	0	19	n	0.27	3	8	3	8	y	0.24	4	13	4	13	y	0.00	0	16	0	16	n	0.00	0	19	0	19	n	0.00	0	14	0	14	n	0.00	0	28	0	28	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.10	2	19	2	19	n	0.06	1	15	1	15	n	0.00	0	21	0	21	n	ENSMUSG00000042178.7	Armc5	chr7	protein_coding	armadillo repeat containing 5
novel_NIR_17040	chr7	128006201	128013916	-	128006201	128019790	A5SS	ENSMUST00000033133.12	novel	0.25	2	6	2	6	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000030844.12	Rgs10	chr7	protein_coding	regulator of G-protein signalling 10
novel_NIR_17041	chr7	128006201	128013916	-	128006201	128020305	A5SS	ENSMUST00000147840.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030844.12	Rgs10	chr7	protein_coding	regulator of G-protein signalling 10
novel_NIR_17042	chr7	128006201	128013916	-	128012442	128013916	3pMXE	ENSMUST00000141541.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000084964.3	Gm15503	chr7	lncRNA	predicted gene 15503
novel_NIR_17043	chr7	128047994	128048763	-	128047994	128048455	A5SS	ENSMUST00000123666.8	novel	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.29	2	5	2	5	y	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	15	0	15	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	ENSMUSG00000030846.16	Tial1	chr7	protein_coding	Tia1 cytotoxic granule-associated RNA binding protein-like 1
novel_NIR_17044	chr7	128047994	128048763	-	128047994;128048522	128048455;128048763	ES	ENSMUST00000205278.2	novel	0.00	0	3.5	0	7;0	n	0.00	0	5.0	0	10;0	n	0.00	0	6.5	0	10;3	n	0.40	2	3.0	2	5;1	y	0.00	0	4.5	0	9;0	n	0.00	0	2.0	0	4;0	n	0.00	0	7.5	0	15;0	n	0.00	0	1.0	0	2;0	n	0.00	0	3.5	0	7;0	n	0.00	0	4.5	0	9;0	n	0.00	0	2.0	0	4;0	n	0.00	0	4.5	0	8;1	n	ENSMUSG00000030846.16	Tial1	chr7	protein_coding	Tia1 cytotoxic granule-associated RNA binding protein-like 1
novel_NIR_17045	chr7	128053224	128056660	-	128044383	128056660	A3SS	ENSMUST00000205835.2	novel	1.00	8	0	8	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	ENSMUSG00000030846.16	Tial1	chr7	protein_coding	Tia1 cytotoxic granule-associated RNA binding protein-like 1
novel_NIR_17046	chr7	128053224	128056660	-	128050494	128056660	A3SS	ENSMUST00000106226.9	novel	0.35	8	15	8	15	y	0.06	1	16	1	16	n	0.04	1	22	1	22	n	0.12	2	15	2	15	n	0.16	4	21	4	21	y	0.25	3	9	3	9	n	0.15	3	17	3	17	y	0.25	3	9	3	9	y	0.25	4	12	4	12	n	0.11	2	17	2	17	n	0.10	1	9	1	9	n	0.15	3	17	3	17	y	ENSMUSG00000030846.16	Tial1	chr7	protein_coding	Tia1 cytotoxic granule-associated RNA binding protein-like 1
novel_NIR_17047	chr7	128346902	128351786	+	128346902	128354430	A3SS	ENSMUST00000205856.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000055319.9	Sec23ip	chr7	protein_coding	Sec23 interacting protein
novel_NIR_17048	chr7	128380338	128380790	+	128380338	128380787	A3SS	ENSMUST00000042942.10	novel	0.32	24	50	24	50	y	0.28	18	46	18	46	y	0.12	13	92	13	92	n	0.08	4	45	4	45	n	0.10	10	89	10	89	n	0.25	11	33	11	33	y	0.12	10	76	10	76	n	0.13	7	47	7	47	n	0.11	6	47	6	47	n	0.08	6	73	6	73	n	0.07	4	53	4	53	n	0.11	8	64	8	64	n	ENSMUSG00000055319.9	Sec23ip	chr7	protein_coding	Sec23 interacting protein
novel_NIR_17049	chr7	129193964	129194700	+	129193787	129194700	A5SS	ENSMUST00000084519.7	novel	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	17	0	17	n	0.27	3	8	3	8	y	0.00	0	9	0	9	n	0.00	0	19	0	19	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	ENSMUSG00000042055.14	Wdr11	chr7	protein_coding	WD repeat domain 11
novel_NIR_17050	chr7	129844374	129850278	-	129844374	129863479	A5SS	ENSMUST00000153166.8	novel	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.17	2	10	2	10	y	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	22	0	22	n	ENSMUSG00000030849.19	Fgfr2	chr7	protein_coding	fibroblast growth factor receptor 2
novel_NIR_17051	chr7	12995566	12996143	-	12995566	13003261	A5SS	ENSMUST00000119139.10	novel	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000070814.18	Zswim9	chr7	protein_coding	zinc finger SWIM-type containing 9
novel_NIR_17052	chr7	12995566	12996143	-	12995566	13003460	A5SS	ENSMUST00000119558.9	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000070814.18	Zswim9	chr7	protein_coding	zinc finger SWIM-type containing 9
novel_NIR_17053	chr7	130083445	130109212	-	130083445;130105580	130105452;130109212	ES	ENSMUST00000035458.15	novel	0.00	0	11.5	0	15;8	n	0.00	0	1.5	0	3;0	n	0.00	0	13.5	0	19;8	n	0.00	0	8.5	0	10;7	n	0.00	0	14.0	0	19;9	n	0.00	0	4.0	0	5;3	n	0.00	0	7.0	0	10;4	n	0.35	4	7.5	4	11;4	y	0.00	0	9.0	0	12;6	n	0.00	0	9.0	0	12;6	n	0.00	0	6.0	0	3;9	n	0.00	0	10.0	0	11;9	n	ENSMUSG00000030850.18	Ate1	chr7	protein_coding	arginyltransferase 1
novel_NIR_17054	chr7	130083445	130109212	-	130083445;130106552	130106424;130109212	ES	ENSMUST00000033139.15	novel	0.00	0	8.5	0	9;8	n	0.00	0	3.0	0	2;4	n	0.00	0	12.5	0	13;12	n	0.00	0	12.0	0	11;13	n	0.00	0	10.0	0	9;11	n	0.00	0	5.5	0	6;5	n	0.00	0	7.0	0	8;6	n	0.35	4	7.5	4	6;9	y	0.00	0	7.5	0	8;7	n	0.00	0	11.5	0	11;12	n	0.00	0	7.0	0	8;6	n	0.00	0	14.0	0	14;14	n	ENSMUSG00000030850.18	Ate1	chr7	protein_coding	arginyltransferase 1
novel_NIR_17055	chr7	130083445	130109212	-	130106552	130109212	A3SS&ES	ENSMUST00000207041.2	novel	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.31	4	9	4	9	y	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	ENSMUSG00000030850.18	Ate1	chr7	protein_coding	arginyltransferase 1
novel_NIR_17056	chr7	130203667	130276332	+	130203667	130223451	3pMXE	ENSMUST00000215492.2	novel	1.00	5	0	5	0	y	0.00	0	4	0	4	n	0.32	13	28	13	28	y	0.00	0	1	0	1	n	0.48	14	15	14	15	y	0.36	9	16	9	16	y	0.00	0	53	0	53	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	3	0	3	n	0.33	4	8	4	8	y	0.60	3	2	3	2	y	ENSMUSG00000030852.19	Tacc2	chr7	protein_coding	transforming, acidic coiled-coil containing protein 2
novel_NIR_17057	chr7	130203667	130276332	+	130203667;130264871	130264746;130276332	ES	ENSMUST00000207789.2	novel	0.45	5	6.0	5	6;6	y	0.00	0	16.5	0	8;25	n	0.16	13	66.0	13	42;90	y	0.00	0	17.5	0	13;22	n	0.22	14	51.0	14	37;65	y	0.16	9	48.0	9	31;65	y	0.00	0	70.5	0	23;118	n	0.00	0	27.5	0	20;35	n	0.13	2	13.0	2	15;11	n	0.00	0	21.5	0	14;29	n	0.38	4	6.5	4	6;7	y	0.21	3	11.5	3	5;18	y	ENSMUSG00000030852.19	Tacc2	chr7	protein_coding	transforming, acidic coiled-coil containing protein 2
novel_NIR_17058	chr7	130203667	130276332	+	130248160	130276332	5pMXE	ENSMUST00000207549.2	novel	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	13	0	13	0	y	-	-	-	-	-	-	0.88	14	2	14	2	y	1.00	9	0	9	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	3	0	3	0	y	ENSMUSG00000030852.19	Tacc2	chr7	protein_coding	transforming, acidic coiled-coil containing protein 2
novel_NIR_17059	chr7	130203667	130318433	+	130203667	130223451	3pMXE	ENSMUST00000215492.2	novel	-	-	-	-	-	-	0.33	2	4	2	4	y	0.03	1	28	1	28	n	0.00	0	1	0	1	n	0.00	0	15	0	15	n	0.00	0	16	0	16	n	0.02	1	53	1	53	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.11	1	8	1	8	n	0.00	0	2	0	2	n	ENSMUSG00000030852.19	Tacc2	chr7	protein_coding	transforming, acidic coiled-coil containing protein 2
novel_NIR_17060	chr7	130203667	130318433	+	130294717	130318433	5pMXE	ENSMUST00000208743.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000030852.19	Tacc2	chr7	protein_coding	transforming, acidic coiled-coil containing protein 2
novel_NIR_17061	chr7	130203667	130318433	+	130315791	130318433	5pMXE	ENSMUST00000239258.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000030852.19	Tacc2	chr7	protein_coding	transforming, acidic coiled-coil containing protein 2
novel_NIR_17062	chr7	130228571	130276332	+	130248160	130276332	5pMXE	ENSMUST00000207549.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030852.19	Tacc2	chr7	protein_coding	transforming, acidic coiled-coil containing protein 2
novel_NIR_17063	chr7	130229229	130276332	+	130229229;130264871	130264746;130276332	ES	ENSMUST00000207918.2	novel	0.00	0	4.5	0	3;6	n	0.11	2	16.0	2	7;25	n	0.14	11	65.5	11	41;90	n	0.00	0	12.5	0	3;22	n	0.04	2	45.5	2	26;65	n	0.00	0	48.5	0	32;65	n	0.14	14	89.0	14	60;118	n	0.12	3	22.0	3	9;35	n	0.00	0	7.5	0	4;11	n	0.18	4	18.5	4	8;29	y	0.00	0	4.5	0	2;7	n	0.14	2	12.0	2	6;18	n	ENSMUSG00000030852.19	Tacc2	chr7	protein_coding	transforming, acidic coiled-coil containing protein 2
novel_NIR_17064	chr7	130229229	130276332	+	130248160	130276332	5pMXE	ENSMUST00000207549.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	11	0	11	0	y	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	14	0	14	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000030852.19	Tacc2	chr7	protein_coding	transforming, acidic coiled-coil containing protein 2
novel_NIR_17065	chr7	130264871	130318433	+	130294717	130318433	5pMXE	ENSMUST00000208743.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030852.19	Tacc2	chr7	protein_coding	transforming, acidic coiled-coil containing protein 2
novel_NIR_17066	chr7	130264871	130318433	+	130315791	130318433	5pMXE	ENSMUST00000239258.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030852.19	Tacc2	chr7	protein_coding	transforming, acidic coiled-coil containing protein 2
novel_NIR_17067	chr7	130361765	130366035	+	130361765	130362906	3pMXE	ENSMUST00000209108.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.62	5	3	5	3	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000030852.19	Tacc2	chr7	protein_coding	transforming, acidic coiled-coil containing protein 2
novel_NIR_17068	chr7	130986322	130987783	+	130986322	130986528	A3SS&ES	ENSMUST00000133284.3	novel	0.00	0	2	0	2	n	0.60	3	2	3	2	y	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.17	1	5	1	5	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000063179.14	Pstk	chr7	protein_coding	phosphoseryl-tRNA kinase
novel_NIR_17069	chr7	130986322	130987783	+	130986322	130994229	A3SS	ENSMUST00000207489.2	novel	0.00	0	2	0	2	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000063179.14	Pstk	chr7	protein_coding	phosphoseryl-tRNA kinase
novel_NIR_17070	chr7	132171869	132175838	-	132171869	132177240	A5SS	ENSMUST00000211545.2	novel	0.75	3	1	3	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.88	7	1	7	1	y	0.00	0	2	0	2	n	0.67	2	1	2	1	y	1.00	7	0	7	0	y	1.00	1	0	1	0	n	0.67	4	2	4	2	y	0.73	11	4	11	4	y	0.50	1	1	1	1	n	0.80	16	4	16	4	y	ENSMUSG00000030934.10	Oat	chr7	protein_coding	ornithine aminotransferase
novel_NIR_17071	chr7	132171869	132176270	-	132171869	132177240	A5SS	ENSMUST00000211545.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.43	3	4	3	4	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000030934.10	Oat	chr7	protein_coding	ornithine aminotransferase
novel_NIR_17072	chr7	132222624	132223761	+	132222672	132223761	A5SS	ENSMUST00000210168.2	novel	0.12	1	7	1	7	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.12	1	7	1	7	n	0.29	2	5	2	5	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.40	4	6	4	6	y	0.00	0	3	0	3	n	0.00	0	11	0	11	n	ENSMUSG00000030946.14	Lhpp	chr7	protein_coding	phospholysine phosphohistidine inorganic pyrophosphate phosphatase
novel_NIR_17073	chr7	132252058	132307321	+	132244308	132307321	A5SS	ENSMUST00000133969.8	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000030946.14	Lhpp	chr7	protein_coding	phospholysine phosphohistidine inorganic pyrophosphate phosphatase
novel_NIR_17074	chr7	132381114	132429432	-	132381114	132381603	5pMXE	ENSMUST00000146460.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000030956.16	Fam53b	chr7	protein_coding	family with sequence similarity 53, member B
novel_NIR_17075	chr7	132381114	132429432	-	132381114	132388597	5pMXE	ENSMUST00000065371.14	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000030956.16	Fam53b	chr7	protein_coding	family with sequence similarity 53, member B
novel_NIR_17076	chr7	132381114	132429432	-	132381114	132404213	5pMXE	ENSMUST00000148303.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000030956.16	Fam53b	chr7	protein_coding	family with sequence similarity 53, member B
novel_NIR_17077	chr7	132381114	132429432	-	132381114	132404236	5pMXE	ENSMUST00000106169.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000030956.16	Fam53b	chr7	protein_coding	family with sequence similarity 53, member B
novel_NIR_17078	chr7	132381114	132429432	-	132381114	132409018	5pMXE	ENSMUST00000140865.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000030956.16	Fam53b	chr7	protein_coding	family with sequence similarity 53, member B
novel_NIR_17079	chr7	132381114	132429432	-	132381114	132414795	5pMXE	ENSMUST00000097999.9	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.43	3	4	3	4	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000030956.16	Fam53b	chr7	protein_coding	family with sequence similarity 53, member B
novel_NIR_17080	chr7	132381114	132429432	-	132381114	132415310	5pMXE	ENSMUST00000134946.3	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.12	1	7	1	7	n	0.38	3	5	3	5	y	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.50	1	1	1	1	n	ENSMUSG00000030956.16	Fam53b	chr7	protein_coding	family with sequence similarity 53, member B
novel_NIR_17081	chr7	132381114	132429432	-	132381114	132415492	5pMXE	ENSMUST00000097998.9	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000030956.16	Fam53b	chr7	protein_coding	family with sequence similarity 53, member B
novel_NIR_17082	chr7	132429611	132452320	-	132429611	132452324	A5SS	ENSMUST00000120425.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.40	2	3	2	3	y	-	-	-	-	-	-	ENSMUSG00000030960.17	Eef1akmt2	chr7	protein_coding	EEF1A lysine methyltransferase 2
novel_NIR_17083	chr7	132429611	132452320	-	132429611;132438936	132438829;132452320	ES	ENSMUST00000135932.8	novel	0.00	0	3.5	0	4;3	n	0.00	0	5.5	0	5;6	n	0.00	0	4.0	0	3;5	n	0.20	1	4.0	1	5;3	n	0.00	0	4.5	0	2;7	n	0.00	0	3.5	0	5;2	n	0.00	0	3.5	0	5;2	n	-	-	-	-	-	-	0.00	0	2.5	0	1;4	n	0.17	1	5.0	1	6;4	n	0.67	2	1.0	2	1;1	y	0.00	0	5.0	0	1;9	n	ENSMUSG00000030960.17	Eef1akmt2	chr7	protein_coding	EEF1A lysine methyltransferase 2
novel_NIR_17084	chr7	132433188	132438829	-	132429611	132438829	A3SS	ENSMUST00000135932.8	novel	0.50	4	4	4	4	y	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000030960.17	Eef1akmt2	chr7	protein_coding	EEF1A lysine methyltransferase 2
novel_NIR_17085	chr7	132433188	132438829	-	132433305	132438829	A3SS	ENSMUST00000033257.15	novel	0.22	4	14	4	14	y	0.00	0	22	0	22	n	0.00	0	20	0	20	n	0.00	0	19	0	19	n	0.00	0	30	0	30	n	0.00	0	8	0	8	n	0.00	0	20	0	20	n	0.00	0	18	0	18	n	0.00	0	23	0	23	n	0.00	0	34	0	34	n	0.00	0	15	0	15	n	0.00	0	19	0	19	n	ENSMUSG00000030960.17	Eef1akmt2	chr7	protein_coding	EEF1A lysine methyltransferase 2
novel_NIR_17086	chr7	132461411	132466692	+	132461062	132466692	A5SS	ENSMUST00000084497.12	novel	0.04	1	23	1	23	n	0.18	4	18	4	18	y	0.03	1	34	1	34	n	0.11	4	34	4	34	n	0.14	6	36	6	36	n	0.00	0	38	0	38	n	0.17	7	33	7	33	y	0.00	0	22	0	22	n	0.05	1	18	1	18	n	0.15	6	35	6	35	y	0.03	1	28	1	28	n	0.04	1	27	1	27	n	ENSMUSG00000030965.20	Abraxas2	chr7	protein_coding	BRISC complex subunit
novel_NIR_17087	chr7	132494983	132526838	-	132494983	132532737	A5SS	ENSMUST00000209767.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.50	1	1	1	1	n	ENSMUSG00000097595.3	1500002F19Rik	chr7	lncRNA	RIKEN cDNA 1500002F19 gene
novel_NIR_17088	chr7	132533274	132549773	+	132533274	132551314	A3SS	ENSMUST00000106157.8	novel	0.45	5	6	5	6	y	0.14	1	6	1	6	n	0.39	9	14	9	14	y	0.29	4	10	4	10	y	0.48	12	13	12	13	y	0.22	2	7	2	7	y	0.30	6	14	6	14	y	0.50	8	8	8	8	y	0.55	11	9	11	9	y	0.59	17	12	17	12	y	0.30	3	7	3	7	y	0.27	10	27	10	27	y	ENSMUSG00000030967.16	Zranb1	chr7	protein_coding	zinc finger, RAN-binding domain containing 1
novel_NIR_17089	chr7	132533274;132562463	132562340;132568236	+	132533274;132552164	132551314;132568236	MXE	ENSMUST00000106157.8	novel	0.23	8.0	26.5	2;14	6;47	y	0.27	5.5	15.0	0;11	6;24	n	0.09	3.5	33.5	0;7	14;53	n	0.20	4.5	17.5	0;9	10;25	n	0.13	5.5	36.5	1;10	13;60	n	0.22	5.0	18.0	2;8	7;29	y	0.13	6.0	40.0	2;10	14;66	n	0.12	3.0	21.0	0;6	8;34	n	0.09	2.5	25.5	0;5	9;42	n	0.25	10.5	31.5	0;21	12;51	n	0.14	3.5	21.5	2;5	7;36	n	0.19	10.0	41.5	0;20	27;56	n	ENSMUSG00000030967.16	Zranb1	chr7	protein_coding	zinc finger, RAN-binding domain containing 1
novel_NIR_17090	chr7	132552164;132562463	132562340;132568236	+	132552164	132568236	cassetteExon	ENSMUST00000106157.8	novel	0.15	8.5	47	3;14	47	y	0.28	9.5	24	8;11	24	y	0.07	4.0	53	1;7	53	n	0.21	6.5	25	4;9	25	y	0.11	7.5	60	5;10	60	n	0.13	4.5	29	1;8	29	n	0.11	8.0	66	6;10	66	n	0.13	5.0	34	4;6	34	n	0.12	6.0	42	7;5	42	n	0.28	19.5	51	18;21	51	y	0.09	3.5	36	2;5	36	n	0.21	14.5	56	9;20	56	y	ENSMUSG00000030967.16	Zranb1	chr7	protein_coding	zinc finger, RAN-binding domain containing 1
novel_NIR_17091	chr7	133292322	133299398	-	133294385	133299398	3pMXE	ENSMUST00000106144.8	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.20	1	4	1	4	n	0.00	0	7	0	7	n	0.50	3	3	3	3	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	6	0	6	n	ENSMUSG00000030979.14	Uros	chr7	protein_coding	uroporphyrinogen III synthase
novel_NIR_17092	chr7	133304198	133310712	-	133304198	133311458	A5SS	ENSMUST00000151348.2	novel	0.00	0	6	0	6	n	0.17	1	5	1	5	n	0.00	0	19	0	19	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.14	1	6	1	6	n	0.22	2	7	2	7	y	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	ENSMUSG00000030979.14	Uros	chr7	protein_coding	uroporphyrinogen III synthase
novel_NIR_17093	chr7	133327124	133327348	-	133327124	133332460	A5SS	ENSMUST00000136301.2	novel	1.00	7	0	7	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	8	0	8	0	y	1.00	9	0	9	0	y	1.00	6	0	6	0	y	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.67	4	2	4	2	y	-	-	-	-	-	-	ENSMUSG00000030986.14	Dhx32	chr7	protein_coding	DEAH (Asp-Glu-Ala-His) box polypeptide 32
novel_NIR_17094	chr7	133327124	133327348	-	133327124	133335697	A5SS	ENSMUST00000033290.12	novel	0.13	7	45	7	45	n	0.03	1	38	1	38	n	0.01	1	100	1	100	n	0.00	0	72	0	72	n	0.04	4	98	4	98	n	0.22	8	28	8	28	y	0.15	9	52	9	52	y	0.12	6	42	6	42	n	0.00	0	52	0	52	n	0.01	1	69	1	69	n	0.09	4	40	4	40	n	0.00	0	73	0	73	n	ENSMUSG00000030986.14	Dhx32	chr7	protein_coding	DEAH (Asp-Glu-Ala-His) box polypeptide 32
novel_NIR_17095	chr7	133327124	133332245	-	133327124	133332460	A5SS	ENSMUST00000136301.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.33	1	2	1	2	n	-	-	-	-	-	-	ENSMUSG00000030986.14	Dhx32	chr7	protein_coding	DEAH (Asp-Glu-Ala-His) box polypeptide 32
novel_NIR_17096	chr7	134355163	134358543	+	134355163	134358606	A3SS	ENSMUST00000211570.2	novel	0.00	0	15	0	15	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.13	2	13	2	13	n	0.00	0	22	0	22	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.18	2	9	2	9	y	0.00	0	9	0	9	n	0.00	0	19	0	19	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	ENSMUSG00000058325.7	Dock1	chr7	protein_coding	dedicator of cytokinesis 1
novel_NIR_17097	chr7	136496416;136521741	136521585;136552997	+	136496416	136552997	cassetteExon	ENSMUST00000081510.4	novel	0.18	8.0	36	7;9	36	y	0.37	11.0	19	10;12	19	y	0.07	1.0	13	0;2	13	n	0.23	13.5	45	13;14	45	y	0.30	14.0	33	12;16	33	y	0.50	5.0	5	1;9	5	n	0.37	10.0	17	7;13	17	y	0.76	6.5	2	6;7	2	y	0.26	10.5	30	9;12	30	y	0.21	11.5	44	7;16	44	y	0.32	15.0	32	12;18	32	y	0.28	11.0	28	9;13	28	y	ENSMUSG00000054612.5	Mgmt	chr7	protein_coding	O-6-methylguanine-DNA methyltransferase
novel_NIR_17098	chr7	136514905	136552997	+	136496416	136552997	A5SS	ENSMUST00000081510.4	novel	0.27	13	36	13	36	y	0.37	11	19	11	19	y	0.00	0	13	0	13	n	0.18	10	45	10	45	y	0.20	8	33	8	33	y	0.00	0	5	0	5	n	0.51	18	17	18	17	y	0.50	2	2	2	2	y	0.30	13	30	13	30	y	0.12	6	44	6	44	n	0.14	5	32	5	32	n	0.18	6	28	6	28	y	ENSMUSG00000054612.5	Mgmt	chr7	protein_coding	O-6-methylguanine-DNA methyltransferase
novel_NIR_17099	chr7	136978080	136978662	-	136978080	136978684	A5SS	ENSMUST00000117404.8	novel	0.83	5	1	5	1	y	0.50	2	2	2	2	y	0.75	3	1	3	1	y	0.60	3	2	3	2	y	0.23	3	10	3	10	y	0.50	1	1	1	1	n	0.00	0	4	0	4	n	1.00	2	0	2	0	y	0.50	1	1	1	1	n	0.56	5	4	5	4	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000040139.15	9430038I01Rik	chr7	protein_coding	RIKEN cDNA 9430038I01 gene
novel_NIR_17100	chr7	136978080	136978662	-	136978080	136989100	A5SS	ENSMUST00000068996.13	novel	0.15	5	29	5	29	y	0.09	2	20	2	20	n	0.33	3	6	3	6	y	0.12	3	22	3	22	n	0.10	3	27	3	27	n	0.33	1	2	1	2	n	0.00	0	20	0	20	n	0.22	2	7	2	7	y	0.04	1	22	1	22	n	0.17	5	24	5	24	n	0.00	0	27	0	27	n	0.00	0	19	0	19	n	ENSMUSG00000040139.15	9430038I01Rik	chr7	protein_coding	RIKEN cDNA 9430038I01 gene
novel_NIR_17101	chr7	136978080	136978662	-	136978080	137012369	A5SS	ENSMUST00000145881.8	novel	0.71	5	2	5	2	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	0.75	3	1	3	1	y	0.43	3	4	3	4	y	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.20	1	4	1	4	n	0.62	5	3	5	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	ENSMUSG00000040139.15	9430038I01Rik	chr7	protein_coding	RIKEN cDNA 9430038I01 gene
novel_NIR_17102	chr7	136990707	137012369	-	136978080	137012369	A3SS	ENSMUST00000145881.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.50	1	1	1	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	ENSMUSG00000040139.15	9430038I01Rik	chr7	protein_coding	RIKEN cDNA 9430038I01 gene
novel_NIR_17103	chr7	137054500	137055237	+	137054500	137061210	A3SS	ENSMUST00000209696.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	4	0	4	0	y	ENSMUSG00000031068.9	Glrx3	chr7	protein_coding	glutaredoxin 3
novel_NIR_17104	chr7	138448433	138450221	+	138448433	138450188	A3SS	ENSMUST00000148453.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000041769.14	Ppp2r2d	chr7	protein_coding	protein phosphatase 2, regulatory subunit B, delta
novel_NIR_17105	chr7	138448433	138450221	+	138448433	138466750	A3SS	ENSMUST00000152104.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041769.14	Ppp2r2d	chr7	protein_coding	protein phosphatase 2, regulatory subunit B, delta
novel_NIR_17106	chr7	138448433	138462566	+	138448433	138450188	A3SS&ES	ENSMUST00000148453.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000041769.14	Ppp2r2d	chr7	protein_coding	protein phosphatase 2, regulatory subunit B, delta
novel_NIR_17107	chr7	138448433	138462566	+	138448433	138466750	A3SS	ENSMUST00000152104.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041769.14	Ppp2r2d	chr7	protein_coding	protein phosphatase 2, regulatory subunit B, delta
novel_NIR_17108	chr7	138470236	138470453	+	138470236	138472119	A3SS	ENSMUST00000136824.8	novel	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	1	2	1	2	n	ENSMUSG00000041769.14	Ppp2r2d	chr7	protein_coding	protein phosphatase 2, regulatory subunit B, delta
novel_NIR_17109	chr7	138474632	138474730	+	138472231	138474730	A5SS	ENSMUST00000172764.2	novel	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	3	3	3	3	y	-	-	-	-	-	-	ENSMUSG00000041769.14	Ppp2r2d	chr7	protein_coding	protein phosphatase 2, regulatory subunit B, delta
novel_NIR_17110	chr7	139617494	139619239	+	139617553	139619239	A5SS	ENSMUST00000211789.2	novel	0.07	3	41	3	41	n	0.36	16	29	16	29	y	0.10	4	35	4	35	n	0.17	7	33	7	33	y	0.35	18	33	18	33	y	0.18	2	9	2	9	y	0.18	9	41	9	41	y	0.07	2	25	2	25	n	0.36	9	16	9	16	y	0.18	7	32	7	32	y	0.33	15	31	15	31	y	0.39	21	33	21	33	y	ENSMUSG00000025470.12	Zfp511	chr7	protein_coding	zinc finger protein 511
novel_NIR_17111	chr7	139619358;139619810	139619703;139620156	+	139619358	139620156	cassetteExon	ENSMUST00000211789.2	novel	0.08	2.0	23	1;3	23	n	0.03	1.0	37	1;1	37	n	0.04	1.0	27	0;2	27	n	0.24	6.0	19	3;9	19	y	0.24	5.0	16	5;5	16	y	0.00	0.0	13	0;0	13	n	0.11	4.5	35	4;5	35	n	0.05	0.5	10	0;1	10	n	0.00	0.0	18	0;0	18	n	0.10	3.0	28	2;4	28	n	0.03	0.5	17	0;1	17	n	0.02	0.5	30	0;1	30	n	ENSMUSG00000025470.12	Zfp511	chr7	protein_coding	zinc finger protein 511
novel_NIR_17112	chr7	139619358;139619810	139619776;139620156	+	139619358	139620156	cassetteExon	ENSMUST00000211789.2	novel	0.08	2.0	23	1;3	23	n	0.01	0.5	37	0;1	37	n	0.04	1.0	27	0;2	27	n	0.19	4.5	19	0;9	19	n	0.22	4.5	16	4;5	16	y	0.00	0.0	13	0;0	13	n	0.08	3.0	35	1;5	35	n	0.05	0.5	10	0;1	10	n	0.00	0.0	18	0;0	18	n	0.12	4.0	28	4;4	28	n	0.03	0.5	17	0;1	17	n	0.06	2.0	30	3;1	30	n	ENSMUSG00000025470.12	Zfp511	chr7	protein_coding	zinc finger protein 511
novel_NIR_17113	chr7	139681582	139681923	-	139681582	139681708	5pMXE	ENSMUST00000125421.8	novel	0.56	5	4	5	4	y	0.43	3	4	3	4	y	0.71	10	4	10	4	y	0.00	0	2	0	2	n	0.20	2	8	2	8	y	0.60	3	2	3	2	y	1.00	8	0	8	0	y	0.33	2	4	2	4	y	0.67	6	3	6	3	y	1.00	7	0	7	0	y	0.38	3	5	3	5	y	0.50	3	3	3	3	y	ENSMUSG00000025466.20	Fuom	chr7	protein_coding	fucose mutarotase
novel_NIR_17114	chr7	139681582	139681923	-	139681582	139681994	A5SS	ENSMUST00000143197.8	novel	0.71	5	2	5	2	y	0.43	3	4	3	4	y	0.59	10	7	10	7	y	0.00	0	5	0	5	n	0.67	2	1	2	1	y	0.60	3	2	3	2	y	0.80	8	2	8	2	y	1.00	2	0	2	0	y	0.60	6	4	6	4	y	0.58	7	5	7	5	y	0.50	3	3	3	3	y	0.38	3	5	3	5	y	ENSMUSG00000025466.20	Fuom	chr7	protein_coding	fucose mutarotase
novel_NIR_17115	chr7	139681582	139682181	-	139681582	139681708	5pMXE	ENSMUST00000125421.8	novel	0.56	5	4	5	4	y	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.25	1	3	1	3	n	1.00	1	0	1	0	n	0.50	5	5	5	5	y	0.25	1	3	1	3	n	ENSMUSG00000025466.20	Fuom	chr7	protein_coding	fucose mutarotase
novel_NIR_17116	chr7	139681582	139682181	-	139681582	139681994	A5SS	ENSMUST00000143197.8	novel	0.71	5	2	5	2	y	0.20	1	4	1	4	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.20	1	4	1	4	n	0.17	1	5	1	5	n	0.62	5	3	5	3	y	0.17	1	5	1	5	n	ENSMUSG00000025466.20	Fuom	chr7	protein_coding	fucose mutarotase
novel_NIR_17117	chr7	139692459	139692575	-	139692459	139696220	A5SS	ENSMUST00000151505.8	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.33	2	4	2	4	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000025465.14	Echs1	chr7	protein_coding	enoyl Coenzyme A hydratase, short chain, 1, mitochondrial
novel_NIR_17118	chr7	139695853	139706239	+	139705795	139706239	5pMXE	ENSMUST00000026537.13	novel	0.44	4	5	4	5	y	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	ENSMUSG00000025464.16	Paox	chr7	protein_coding	polyamine oxidase (exo-N4-amino)
novel_NIR_17119	chr7	139695853	139707421	+	139695853	139697160	A3SS&ES	ENSMUST00000209908.2	novel	0.00	0	47	0	47	n	0.00	0	36	0	36	n	0.00	0	20	0	20	n	0.00	0	50	0	50	n	0.10	7	64	7	64	n	0.00	0	18	0	18	n	0.17	11	52	11	52	y	0.00	0	31	0	31	n	0.00	0	68	0	68	n	0.10	8	69	8	69	n	0.04	3	64	3	64	n	0.06	7	104	7	104	n	ENSMUSG00000025464.16	Paox	chr7	protein_coding	polyamine oxidase (exo-N4-amino)
novel_NIR_17120	chr7	139695853	139707421	+	139695853;139697269	139697160;139707421	ES	ENSMUST00000211757.2	novel	0.00	0	32.5	0	47;18	n	0.00	0	20.5	0	36;5	n	0.00	0	11.0	0	20;2	n	0.00	0	31.0	0	50;12	n	0.16	7	36.5	7	64;9	y	0.00	0	11.5	0	18;5	n	0.26	11	31.5	11	52;11	y	0.00	0	18.5	0	31;6	n	0.00	0	41.0	0	68;14	n	0.16	8	43.5	8	69;18	y	0.07	3	40.5	3	64;17	n	0.11	7	58.5	7	104;13	n	ENSMUSG00000025464.16	Paox	chr7	protein_coding	polyamine oxidase (exo-N4-amino)
novel_NIR_17121	chr7	139695853	139708931	+	139705795	139708931	5pMXE	ENSMUST00000097967.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000025464.16	Paox	chr7	protein_coding	polyamine oxidase (exo-N4-amino)
novel_NIR_17122	chr7	139697269	139698573	+	139697269	139706239	A3SS	ENSMUST00000210240.2	novel	0.18	2	9	2	9	y	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	22	0	22	n	0.00	0	5	0	5	n	0.00	0	31	0	31	n	0.00	0	27	0	27	n	0.05	1	19	1	19	n	0.00	0	37	0	37	n	ENSMUSG00000025464.16	Paox	chr7	protein_coding	polyamine oxidase (exo-N4-amino)
novel_NIR_17123	chr7	139697269	139706304	+	139697269	139706239	A3SS	ENSMUST00000210240.2	novel	0.25	3	9	3	9	y	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.21	4	15	4	15	y	0.29	5	12	5	12	y	0.00	0	4	0	4	n	0.08	2	22	2	22	n	0.00	0	5	0	5	n	0.06	2	31	2	31	n	0.10	3	27	3	27	n	0.17	4	19	4	19	y	0.10	4	37	4	37	n	ENSMUSG00000025464.16	Paox	chr7	protein_coding	polyamine oxidase (exo-N4-amino)
novel_NIR_17124	chr7	139697269	139706304	+	139697269	139707421	A3SS	ENSMUST00000211757.2	novel	0.14	3	18	3	18	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.25	4	12	4	12	y	0.36	5	9	5	9	y	0.00	0	5	0	5	n	0.15	2	11	2	11	y	0.00	0	6	0	6	n	0.12	2	14	2	14	n	0.14	3	18	3	18	n	0.19	4	17	4	17	y	0.24	4	13	4	13	y	ENSMUSG00000025464.16	Paox	chr7	protein_coding	polyamine oxidase (exo-N4-amino)
novel_NIR_17125	chr7	140297925	140298069	+	140297467	140298069	A5SS	ENSMUST00000218525.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000110199.3	Olfr542-ps1	chr7	transcribed_unprocessed_pseudogene	olfactory receptor 542, pseudogene 1
novel_NIR_17126	chr7	140349158	140349482	+	140349158	140352932	A3SS	ENSMUST00000210235.2	novel	0.00	0	16	0	16	n	0.00	0	17	0	17	n	0.00	0	8	0	8	n	0.92	298	27	298	27	y	0.00	0	34	0	34	n	0.00	0	4	0	4	n	0.96	848	33	848	33	n	0.00	0	10	0	10	n	0.97	630	18	630	18	y	0.84	137	27	137	27	y	0.00	0	14	0	14	n	0.00	0	21	0	21	n	ENSMUSG00000025479.10	Cyp2e1	chr7	protein_coding	cytochrome P450, family 2, subfamily e, polypeptide 1
novel_NIR_17127	chr7	140349158	140349572	+	140349158	140352932	A3SS	ENSMUST00000210235.2	novel	0.16	3	16	3	16	y	0.15	3	17	3	17	y	0.00	0	8	0	8	n	0.16	5	27	5	27	y	0.00	0	34	0	34	n	0.00	0	4	0	4	n	0.13	5	33	5	33	n	0.00	0	10	0	10	n	0.00	0	18	0	18	n	0.00	0	27	0	27	n	0.18	3	14	3	14	y	0.00	0	21	0	21	n	ENSMUSG00000025479.10	Cyp2e1	chr7	protein_coding	cytochrome P450, family 2, subfamily e, polypeptide 1
novel_NIR_17128	chr7	140349637;140350108	140350049;140350855	+	140349637	140350855	cassetteExon	ENSMUST00000209253.2	novel	0.14	4.0	24	0;8	24	n	0.00	0.0	26	0;0	26	n	0.00	0.0	5	0;0	5	n	1.00	77.5	0	147;8	0	y	1.00	18.0	0	0;36	0	n	0.00	0.0	5	0;0	5	n	0.00	0.0	32	0;0	32	n	0.00	0.0	13	0;0	13	n	0.00	0.0	30	0;0	30	n	0.00	0.0	32	0;0	32	n	-	-	-	-	-	-	0.00	0.0	24	0;0	24	n	ENSMUSG00000025479.10	Cyp2e1	chr7	protein_coding	cytochrome P450, family 2, subfamily e, polypeptide 1
novel_NIR_17129	chr7	140350108	140350855	+	140349637	140350855	A5SS	ENSMUST00000209253.2	novel	0.25	8	24	8	24	y	0.00	0	26	0	26	n	0.00	0	5	0	5	n	1.00	8	0	8	0	n	1.00	36	0	36	0	y	0.00	0	5	0	5	n	0.00	0	32	0	32	n	0.00	0	13	0	13	n	0.00	0	30	0	30	n	0.00	0	32	0	32	n	-	-	-	-	-	-	0.00	0	24	0	24	n	ENSMUSG00000025479.10	Cyp2e1	chr7	protein_coding	cytochrome P450, family 2, subfamily e, polypeptide 1
novel_NIR_17130	chr7	140350140	140350855	+	140349637	140350855	A5SS	ENSMUST00000209253.2	novel	0.00	0	24	0	24	n	0.00	0	26	0	26	n	0.44	4	5	4	5	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	32	0	32	n	0.00	0	13	0	13	n	0.00	0	30	0	30	n	0.00	0	32	0	32	n	1.00	3	0	3	0	y	0.00	0	24	0	24	n	ENSMUSG00000025479.10	Cyp2e1	chr7	protein_coding	cytochrome P450, family 2, subfamily e, polypeptide 1
novel_NIR_17131	chr7	140415217	140415525	+	140415368	140415525	A5SS	ENSMUST00000185612.3	novel	1.00	4	0	4	0	y	1.00	7	0	7	0	y	0.41	16	23	16	23	y	0.00	0	39	0	39	n	-	-	-	-	-	-	0.29	7	17	7	17	y	0.21	11	41	11	41	y	-	-	-	-	-	-	0.00	0	27	0	27	n	1.00	1	0	1	0	n	0.00	0	47	0	47	n	1.00	1	0	1	0	n	ENSMUSG00000025481.13	Urah	chr7	protein_coding	urate (5-hydroxyiso-) hydrolase
novel_NIR_17132	chr7	140416795	140416950	+	140416795	140417620	A3SS	ENSMUST00000210916.2	novel	0.03	1	29	1	29	n	0.00	0	28	0	28	n	-	-	-	-	-	-	0.04	1	27	1	27	n	0.00	0	39	0	39	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	17	0	17	n	-	-	-	-	-	-	0.00	0	55	0	55	n	0.02	1	43	1	43	n	1.00	2	0	2	0	y	ENSMUSG00000025481.13	Urah	chr7	protein_coding	urate (5-hydroxyiso-) hydrolase
novel_NIR_17133	chr7	140416795	140417440	+	140416795	140417496	A3SS	ENSMUST00000209978.2	novel	0.08	4	44	4	44	n	0.24	11	34	11	34	y	0.08	4	44	4	44	n	0.16	6	32	6	32	y	0.01	1	80	1	80	n	0.00	0	25	0	25	n	0.11	6	48	6	48	n	0.09	3	31	3	31	n	0.07	3	39	3	39	n	0.02	1	52	1	52	n	0.13	6	41	6	41	n	0.14	11	69	11	69	n	ENSMUSG00000025481.13	Urah	chr7	protein_coding	urate (5-hydroxyiso-) hydrolase
novel_NIR_17134	chr7	140416795	140417440	+	140416795	140417620	A3SS	ENSMUST00000210916.2	novel	0.12	4	29	4	29	n	0.28	11	28	11	28	y	1.00	4	0	4	0	y	0.18	6	27	6	27	y	0.03	1	39	1	39	n	-	-	-	-	-	-	1.00	6	0	6	0	y	0.15	3	17	3	17	y	1.00	3	0	3	0	y	0.02	1	55	1	55	n	0.12	6	43	6	43	n	1.00	11	0	11	0	y	ENSMUSG00000025481.13	Urah	chr7	protein_coding	urate (5-hydroxyiso-) hydrolase
novel_NIR_17135	chr7	140416795	140417739	+	140416795	140417496	3pMXE	ENSMUST00000209978.2	novel	0.00	0	44	0	44	n	0.19	8	34	8	34	y	0.00	0	44	0	44	n	0.24	10	32	10	32	y	0.00	0	80	0	80	n	0.00	0	25	0	25	n	0.00	0	48	0	48	n	0.00	0	31	0	31	n	0.00	0	39	0	39	n	0.00	0	52	0	52	n	0.00	0	41	0	41	n	0.00	0	69	0	69	n	ENSMUSG00000025481.13	Urah	chr7	protein_coding	urate (5-hydroxyiso-) hydrolase
novel_NIR_17136	chr7	140416795	140417739	+	140416795	140417620	A3SS	ENSMUST00000210916.2	novel	0.00	0	29	0	29	n	0.22	8	28	8	28	y	-	-	-	-	-	-	0.27	10	27	10	27	y	0.00	0	39	0	39	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	17	0	17	n	-	-	-	-	-	-	0.00	0	55	0	55	n	0.00	0	43	0	43	n	-	-	-	-	-	-	ENSMUSG00000025481.13	Urah	chr7	protein_coding	urate (5-hydroxyiso-) hydrolase
novel_NIR_17137	chr7	140445097	140449390	-	140445097	140445579	A5SS&ES	ENSMUST00000210296.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.20	2	8	2	8	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.33	1	2	1	2	n	0.50	3	3	3	3	y	ENSMUSG00000025486.18	Sirt3	chr7	protein_coding	sirtuin 3
novel_NIR_17138	chr7	140445097	140449390	-	140445097	140447644	A5SS&ES	ENSMUST00000211179.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	ENSMUSG00000025486.18	Sirt3	chr7	protein_coding	sirtuin 3
novel_NIR_17139	chr7	140445097	140449390	-	140445097	140456267	A5SS	ENSMUST00000137024.8	novel	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.29	2	5	2	5	y	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.08	1	11	1	11	n	0.11	1	8	1	8	n	0.33	3	6	3	6	y	ENSMUSG00000025486.18	Sirt3	chr7	protein_coding	sirtuin 3
novel_NIR_17140	chr7	140452871	140456267	-	140445097	140456267	A3SS	ENSMUST00000137024.8	novel	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.50	2	2	2	2	y	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.08	1	11	1	11	n	0.00	0	8	0	8	n	0.14	1	6	1	6	n	ENSMUSG00000025486.18	Sirt3	chr7	protein_coding	sirtuin 3
novel_NIR_17141	chr7	140485978	140486431	+	140485978	140486279	A3SS	ENSMUST00000210080.2	novel	0.38	8	13	8	13	y	0.26	5	14	5	14	y	0.00	0	6	0	6	n	0.30	6	14	6	14	y	0.29	12	29	12	29	y	0.25	2	6	2	6	y	0.24	8	25	8	25	y	0.12	2	14	2	14	n	0.16	5	26	5	26	y	0.20	10	40	10	40	y	0.32	8	17	8	17	y	0.00	0	24	0	24	n	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17142	chr7	140485986	140486279	+	140485978	140486279	A5SS	ENSMUST00000210080.2	novel	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.40	4	6	4	6	y	0.00	0	14	0	14	n	0.00	0	29	0	29	n	0.00	0	6	0	6	n	0.00	0	25	0	25	n	0.00	0	14	0	14	n	0.00	0	26	0	26	n	0.00	0	40	0	40	n	0.00	0	17	0	17	n	0.25	8	24	8	24	y	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17143	chr7	140485986	140486279	+	140486049	140486279	A5SS	ENSMUST00000209817.2	novel	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.20	4	16	4	16	y	0.00	0	20	0	20	n	0.00	0	27	0	27	n	0.00	0	9	0	9	n	0.00	0	27	0	27	n	0.00	0	16	0	16	n	0.00	0	33	0	33	n	0.00	0	48	0	48	n	0.00	0	31	0	31	n	0.21	8	30	8	30	y	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17144	chr7	140486020	140486279	+	140485978	140486279	A5SS	ENSMUST00000210080.2	novel	0.66	25	13	25	13	y	0.61	22	14	22	14	y	0.57	8	6	8	6	y	0.67	29	14	29	14	y	0.73	77	29	77	29	y	0.74	17	6	17	6	y	0.70	57	25	57	25	y	0.69	31	14	31	14	y	0.66	51	26	51	26	y	0.67	82	40	82	40	y	0.78	59	17	59	17	y	0.71	59	24	59	24	y	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17145	chr7	140486020	140486279	+	140486049	140486279	A5SS	ENSMUST00000209817.2	novel	0.64	25	14	25	14	y	0.58	22	16	22	16	y	0.33	8	16	8	16	y	0.59	29	20	29	20	y	0.74	77	27	77	27	y	0.65	17	9	17	9	y	0.68	57	27	57	27	y	0.66	31	16	31	16	y	0.61	51	33	51	33	y	0.63	82	48	82	48	y	0.66	59	31	59	31	y	0.66	59	30	59	30	y	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17146	chr7	140486020	140486431	+	140486049	140486431	A5SS	ENSMUST00000209496.2	novel	0.26	58	163	58	163	y	0.28	45	118	45	118	y	0.31	17	38	17	38	y	0.26	61	177	61	177	y	0.22	71	254	71	254	y	0.22	19	68	19	68	y	0.26	74	211	74	211	y	0.25	27	82	27	82	y	0.25	50	152	50	152	y	0.28	75	194	75	194	y	0.31	76	172	76	172	y	0.22	58	204	58	204	y	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17147	chr7	140486020	140486431	+	140486119	140486431	A5SS	ENSMUST00000209842.2	novel	0.52	58	54	58	54	y	0.42	45	61	45	61	y	0.44	17	22	17	22	y	0.51	61	59	61	59	y	0.43	71	96	71	96	y	0.37	19	32	19	32	y	0.45	74	92	74	92	y	0.38	27	44	27	44	y	0.40	50	75	50	75	y	0.43	75	99	75	99	y	0.52	76	69	76	69	y	0.39	58	90	58	90	y	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17148	chr7	140486049	140487026	+	140486049	140486279	A3SS&ES	ENSMUST00000209817.2	novel	0.07	1	14	1	14	n	0.16	3	16	3	16	y	0.06	1	16	1	16	n	0.20	5	20	5	20	y	0.25	9	27	9	27	y	0.18	2	9	2	9	y	0.13	4	27	4	27	n	0.06	1	16	1	16	n	0.08	3	33	3	33	n	0.09	5	48	5	48	n	0.14	5	31	5	31	n	0.06	2	30	2	30	n	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17149	chr7	140486049	140487175	+	140486049	140486279	A3SS&ES	ENSMUST00000209817.2	novel	0.22	4	14	4	14	y	0.27	6	16	6	16	y	0.06	1	16	1	16	n	0.17	4	20	4	20	y	0.07	2	27	2	27	n	0.10	1	9	1	9	n	0.25	9	27	9	27	y	0.00	0	16	0	16	n	0.11	4	33	4	33	n	0.04	2	48	2	48	n	0.00	0	31	0	31	n	0.12	4	30	4	30	n	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17150	chr7	140486049;140486734	140486712;140487172	+	140486049;140486574	140486279;140487172	MXE	ENSMUST00000209817.2	novel	0.19	14.0	59.0	6;22	14;104	y	0.13	8.5	55.0	4;13	16;94	n	0.15	5.5	30.5	0;11	16;45	n	0.06	4.0	63.5	3;5	20;107	n	0.15	13.0	71.0	4;22	27;115	y	0.13	4.5	30.5	0;9	9;52	n	0.10	7.0	64.5	5;9	27;102	n	0.17	7.5	36.0	0;15	16;56	n	0.11	9.0	73.0	2;16	33;113	n	0.11	12.5	100.0	13;12	48;152	n	0.02	1.5	71.5	1;2	31;112	n	0.10	7.5	64.0	1;14	30;98	n	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17151	chr7	140486119	140486279	+	140485978	140486279	A5SS	ENSMUST00000210080.2	novel	0.50	13	13	13	13	y	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.00	0	29	0	29	n	0.00	0	6	0	6	n	0.63	43	25	43	25	y	0.00	0	14	0	14	n	0.16	5	26	5	26	y	0.00	0	40	0	40	n	0.00	0	17	0	17	n	0.25	8	24	8	24	y	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17152	chr7	140486119	140486279	+	140486049	140486279	A5SS	ENSMUST00000209817.2	novel	0.48	13	14	13	14	y	0.00	0	16	0	16	n	0.00	0	16	0	16	n	0.00	0	20	0	20	n	0.00	0	27	0	27	n	0.00	0	9	0	9	n	0.61	43	27	43	27	y	0.00	0	16	0	16	n	0.13	5	33	5	33	n	0.00	0	48	0	48	n	0.00	0	31	0	31	n	0.21	8	30	8	30	y	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17153	chr7	140486119	140486279	+	140486119	140486431	A3SS	ENSMUST00000209842.2	novel	0.19	13	54	13	54	y	0.00	0	61	0	61	n	0.00	0	22	0	22	n	0.00	0	59	0	59	n	0.00	0	96	0	96	n	0.00	0	32	0	32	n	0.32	43	92	43	92	y	0.00	0	44	0	44	n	0.06	5	75	5	75	n	0.00	0	99	0	99	n	0.00	0	69	0	69	n	0.08	8	90	8	90	n	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17154	chr7	140486119;140486734	140486712;140487175	+	140486119;140486574	140486431;140487175	MXE	ENSMUST00000209842.2	novel	0.00	0.0	63.0	0;0	54;72	n	0.00	0.0	61.5	0;0	61;62	n	0.18	5.0	23.5	0;10	22;25	n	0.10	6.5	61.5	0;13	59;64	n	0.02	2.0	98.0	0;4	96;100	n	0.03	1.0	34.0	0;2	32;36	n	0.03	3.0	90.0	0;6	92;88	n	0.19	10.0	43.0	2;18	44;42	y	0.03	2.5	74.5	0;5	75;74	n	0.07	7.0	93.5	0;14	99;88	n	0.05	4.5	88.5	0;9	69;108	n	0.06	6.0	98.5	5;7	90;107	n	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17155	chr7	140486574	140486667	+	140486574	140486740	A3SS	ENSMUST00000209496.2	novel	0.00	0	3	0	3	n	0.00	0	10	0	10	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.67	20	10	20	10	y	0.00	0	5	0	5	n	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17156	chr7	140486574	140486690	+	140486574	140486740	A3SS	ENSMUST00000209496.2	novel	0.00	0	3	0	3	n	0.00	0	10	0	10	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.39	7	11	7	11	y	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.80	20	5	20	5	y	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17157	chr7	140486574	140486709	+	140486574	140486740	A3SS	ENSMUST00000209496.2	novel	0.91	30	3	30	3	y	0.52	11	10	11	10	y	1.00	3	0	3	0	n	1.00	22	0	22	0	y	0.82	23	5	23	5	y	0.56	5	4	5	4	n	0.75	33	11	33	11	y	0.73	11	4	11	4	y	0.77	23	7	23	7	y	0.79	48	13	48	13	y	0.74	29	10	29	10	y	0.83	25	5	25	5	y	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17158	chr7	140486574	140486712	+	140486574	140486740	A3SS	ENSMUST00000209496.2	novel	0.97	106	3	106	3	y	0.90	89	10	89	10	y	1.00	30	0	30	0	n	1.00	88	0	88	0	y	0.97	181	5	181	5	y	0.89	31	4	31	4	n	0.94	180	11	180	11	y	0.94	58	4	58	4	y	0.95	129	7	129	7	y	0.93	173	13	173	13	y	0.94	155	10	155	10	y	0.96	134	5	134	5	y	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17159	chr7	140486574	140486786	+	140486574	140486740	A3SS	ENSMUST00000209496.2	novel	0.00	0	3	0	3	n	0.00	0	10	0	10	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.89	42	5	42	5	y	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17160	chr7	140486574	140487026	+	140486574	140487172	A3SS	ENSMUST00000209817.2	novel	0.51	107	104	107	104	y	0.43	70	94	70	94	y	0.39	29	45	29	45	y	0.49	101	107	101	107	y	0.59	163	115	163	115	y	0.32	25	52	25	52	y	0.50	101	102	101	102	y	0.50	55	56	55	56	y	0.46	98	113	98	113	n	0.50	149	152	149	152	y	0.54	131	112	131	112	y	0.53	112	98	112	98	y	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17161	chr7	140486574	140487026	+	140486574	140487175	A3SS	ENSMUST00000210080.2	novel	0.60	107	72	107	72	y	0.53	70	62	70	62	y	0.54	29	25	29	25	y	0.61	101	64	101	64	n	0.62	163	100	163	100	y	0.41	25	36	25	36	y	0.53	101	88	101	88	y	0.57	55	42	55	42	y	0.57	98	74	98	74	n	0.63	149	88	149	88	n	0.55	131	108	131	108	y	0.51	112	107	112	107	y	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17162	chr7	140486574	140487026	+	140486574;140486864	140486740;140487026	ES	ENSMUST00000209496.2	novel	0.57	107	80.5	107	3;158	y	0.52	70	65.0	70	10;120	y	0.61	29	18.5	29	0;37	y	0.61	101	65.5	101	0;131	y	0.56	163	127.0	163	5;249	y	0.49	25	26.5	25	4;49	y	0.44	101	131.0	101	11;251	y	0.51	55	53.0	55	4;102	y	0.53	98	88.0	98	7;169	y	0.53	149	130.5	149	13;248	y	0.53	131	118.5	131	10;227	y	0.52	112	102.0	112	5;199	y	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17163	chr7	140486574	140487082	+	140486574	140486740	A3SS&ES	ENSMUST00000209496.2	novel	0.86	18	3	18	3	y	0.52	11	10	11	10	y	1.00	16	0	16	0	y	1.00	16	0	16	0	y	0.89	42	5	42	5	y	0.71	10	4	10	4	y	0.71	27	11	27	11	y	0.64	7	4	7	4	y	0.83	35	7	35	7	y	0.75	39	13	39	13	y	0.70	23	10	23	10	y	0.86	30	5	30	5	y	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17164	chr7	140486574	140487082	+	140486574	140487172	A3SS	ENSMUST00000209817.2	novel	0.15	18	104	18	104	y	0.10	11	94	11	94	n	0.26	16	45	16	45	y	0.13	16	107	16	107	n	0.27	42	115	42	115	y	0.16	10	52	10	52	y	0.21	27	102	27	102	y	0.11	7	56	7	56	n	0.24	35	113	35	113	n	0.20	39	152	39	152	y	0.17	23	112	23	112	y	0.23	30	98	30	98	y	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17165	chr7	140486574	140487082	+	140486574	140487175	A3SS	ENSMUST00000210080.2	novel	0.20	18	72	18	72	y	0.15	11	62	11	62	y	0.39	16	25	16	25	y	0.20	16	64	16	64	n	0.30	42	100	42	100	y	0.22	10	36	10	36	y	0.23	27	88	27	88	y	0.14	7	42	7	42	n	0.32	35	74	35	74	n	0.31	39	88	39	88	n	0.18	23	108	23	108	y	0.22	30	107	30	107	y	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17166	chr7	140486574	140487086	+	140486574	140486740	A3SS&ES	ENSMUST00000209496.2	novel	0.00	0	3	0	3	n	0.00	0	10	0	10	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.78	38	11	38	11	y	0.69	9	4	9	4	y	0.00	0	7	0	7	n	0.54	15	13	15	13	y	0.00	0	10	0	10	n	0.00	0	5	0	5	n	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17167	chr7	140486574	140487086	+	140486574	140487172	A3SS	ENSMUST00000209817.2	novel	0.00	0	104	0	104	n	0.00	0	94	0	94	n	0.00	0	45	0	45	n	0.00	0	107	0	107	n	0.00	0	115	0	115	n	0.00	0	52	0	52	n	0.27	38	102	38	102	y	0.14	9	56	9	56	n	0.00	0	113	0	113	n	0.09	15	152	15	152	n	0.00	0	112	0	112	n	0.00	0	98	0	98	n	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17168	chr7	140486574	140487086	+	140486574	140487175	A3SS	ENSMUST00000210080.2	novel	0.00	0	72	0	72	n	0.00	0	62	0	62	n	0.00	0	25	0	25	n	0.00	0	64	0	64	n	0.00	0	100	0	100	n	0.00	0	36	0	36	n	0.30	38	88	38	88	y	0.18	9	42	9	42	y	0.00	0	74	0	74	n	0.15	15	88	15	88	n	0.00	0	108	0	108	n	0.00	0	107	0	107	n	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17169	chr7	140486574;140486734	140486690;140487172	+	140486574	140487172	cassetteExon	ENSMUST00000209817.2	novel	0.10	11.0	104	0;22	104	n	0.06	6.5	94	0;13	94	n	0.11	5.5	45	0;11	45	n	0.02	2.5	107	0;5	107	n	0.09	11.0	115	0;22	115	n	0.08	4.5	52	0;9	52	n	0.07	8.0	102	7;9	102	n	0.12	7.5	56	0;15	56	n	0.07	8.0	113	0;16	113	n	0.04	6.0	152	0;12	152	n	0.01	1.0	112	0;2	112	n	0.15	17.0	98	20;14	98	y	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17170	chr7	140486574;140486734	140486709;140487026	+	140486574;140486864	140486740;140487026	MXE	ENSMUST00000209496.2	novel	0.16	15.0	80.5	30;0	3;158	n	0.08	5.5	65.0	11;0	10;120	n	0.18	4.0	18.5	3;5	0;37	y	0.14	11.0	65.5	22;0	0;131	n	0.08	11.5	127.0	23;0	5;249	n	0.16	5.0	26.5	5;5	4;49	y	0.11	16.5	131.0	33;0	11;251	n	0.09	5.5	53.0	11;0	4;102	n	0.12	11.5	88.0	23;0	7;169	n	0.16	24.0	130.5	48;0	13;248	n	0.11	14.5	118.5	29;0	10;227	n	0.11	12.5	102.0	25;0	5;199	n	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17171	chr7	140486574;140486734	140486709;140487172	+	140486574	140487172	cassetteExon	ENSMUST00000209817.2	novel	0.20	26.0	104	30;22	104	y	0.11	12.0	94	11;13	94	n	0.13	7.0	45	3;11	45	n	0.11	13.5	107	22;5	107	n	0.16	22.5	115	23;22	115	y	0.12	7.0	52	5;9	52	n	0.17	21.0	102	33;9	102	y	0.19	13.0	56	11;15	56	y	0.15	19.5	113	23;16	113	y	0.16	30.0	152	48;12	152	y	0.12	15.5	112	29;2	112	n	0.17	19.5	98	25;14	98	y	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17172	chr7	140486574;140486734	140486709;140487175	+	140486574	140487175	cassetteExon	ENSMUST00000210080.2	novel	0.17	15.0	72	30;0	72	n	0.08	5.5	62	11;0	62	n	0.21	6.5	25	3;10	25	y	0.21	17.5	64	22;13	64	y	0.12	13.5	100	23;4	100	n	0.09	3.5	36	5;2	36	n	0.18	19.5	88	33;6	88	y	0.26	14.5	42	11;18	42	y	0.16	14.0	74	23;5	74	y	0.26	31.0	88	48;14	88	y	0.15	19.0	108	29;9	108	y	0.13	16.0	107	25;7	107	n	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17173	chr7	140486574;140486734	140486712;140487026	+	140486574;140486864	140486740;140487026	MXE	ENSMUST00000209496.2	novel	0.40	53.0	80.5	106;0	3;158	n	0.41	44.5	65.0	89;0	10;120	n	0.49	17.5	18.5	30;5	0;37	y	0.40	44.0	65.5	88;0	0;131	n	0.42	90.5	127.0	181;0	5;249	n	0.40	18.0	26.5	31;5	4;49	y	0.41	90.0	131.0	180;0	11;251	n	0.35	29.0	53.0	58;0	4;102	n	0.42	64.5	88.0	129;0	7;169	n	0.40	86.5	130.5	173;0	13;248	n	0.40	77.5	118.5	155;0	10;227	n	0.40	67.0	102.0	134;0	5;199	n	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17174	chr7	140486574;140486734	140486712;140487172	+	140486574	140487172	cassetteExon	ENSMUST00000209817.2	novel	0.38	64.0	104	106;22	104	y	0.35	51.0	94	89;13	94	y	0.31	20.5	45	30;11	45	y	0.30	46.5	107	88;5	107	y	0.47	101.5	115	181;22	115	y	0.28	20.0	52	31;9	52	y	0.48	94.5	102	180;9	102	y	0.39	36.5	56	58;15	56	y	0.39	72.5	113	129;16	113	y	0.38	92.5	152	173;12	152	y	0.41	78.5	112	155;2	112	y	0.43	74.0	98	134;14	98	y	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17175	chr7	140486574;140486734	140486712;140487175	+	140486574	140487175	cassetteExon	ENSMUST00000210080.2	novel	0.42	53.0	72	106;0	72	n	0.42	44.5	62	89;0	62	n	0.44	20.0	25	30;10	25	y	0.44	50.5	64	88;13	64	y	0.48	92.5	100	181;4	100	y	0.31	16.5	36	31;2	36	y	0.51	93.0	88	180;6	88	y	0.47	38.0	42	58;18	42	y	0.48	67.0	74	129;5	74	y	0.52	93.5	88	173;14	88	y	0.43	82.0	108	155;9	108	y	0.40	70.5	107	134;7	107	y	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17176	chr7	140486574;140486864	140486709;140487172	+	140486574	140487172	cassetteExon	ENSMUST00000209817.2	novel	0.16	19.5	104	30;9	104	y	0.07	7.0	94	11;3	94	n	0.13	7.0	45	3;11	45	n	0.13	16.5	107	22;11	107	n	0.13	17.5	115	23;12	115	n	0.05	2.5	52	5;0	52	n	0.17	20.5	102	33;8	102	y	0.12	8.0	56	11;5	56	n	0.13	16.5	113	23;10	113	n	0.16	28.0	152	48;8	152	y	0.14	17.5	112	29;6	112	n	0.14	15.5	98	25;6	98	n	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17177	chr7	140486574;140486864	140486709;140487175	+	140486574	140487175	cassetteExon	ENSMUST00000210080.2	novel	0.20	18.5	72	30;7	72	y	0.12	8.5	62	11;6	62	n	0.06	1.5	25	3;0	25	n	0.16	12.0	64	22;2	64	y	0.14	16.0	100	23;9	100	n	0.11	4.5	36	5;4	36	n	0.20	22.5	88	33;12	88	y	0.14	7.0	42	11;3	42	n	0.18	16.5	74	23;10	74	y	0.21	24.0	88	48;0	88	n	0.14	17.5	108	29;6	108	n	0.12	15.0	107	25;5	107	n	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17178	chr7	140486574;140486864	140486712;140487172	+	140486574	140487172	cassetteExon	ENSMUST00000209817.2	novel	0.36	57.5	104	106;9	104	y	0.33	46.0	94	89;3	94	y	0.31	20.5	45	30;11	45	y	0.32	49.5	107	88;11	107	y	0.46	96.5	115	181;12	115	y	0.23	15.5	52	31;0	52	n	0.48	94.0	102	180;8	102	y	0.36	31.5	56	58;5	56	y	0.38	69.5	113	129;10	113	y	0.37	90.5	152	173;8	152	y	0.42	80.5	112	155;6	112	y	0.42	70.0	98	134;6	98	y	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17179	chr7	140486574;140486864	140486712;140487175	+	140486574	140487175	cassetteExon	ENSMUST00000210080.2	novel	0.44	56.5	72	106;7	72	y	0.43	47.5	62	89;6	62	y	0.38	15.0	25	30;0	25	n	0.41	45.0	64	88;2	64	y	0.49	95.0	100	181;9	100	y	0.33	17.5	36	31;4	36	y	0.52	96.0	88	180;12	88	y	0.42	30.5	42	58;3	42	y	0.48	69.5	74	129;10	74	y	0.50	86.5	88	173;0	88	n	0.43	80.5	108	155;6	108	y	0.39	69.5	107	134;5	107	y	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17180	chr7	140486574;140486864	140486786;140487172	+	140486574	140487172	cassetteExon	ENSMUST00000209817.2	novel	0.04	4.5	104	0;9	104	n	0.02	1.5	94	0;3	94	n	0.11	5.5	45	0;11	45	n	0.05	5.5	107	0;11	107	n	0.05	6.0	115	0;12	115	n	0.00	0.0	52	0;0	52	n	0.04	4.0	102	0;8	102	n	0.04	2.5	56	0;5	56	n	0.04	5.0	113	0;10	113	n	0.03	4.0	152	0;8	152	n	0.03	3.0	112	0;6	112	n	0.20	24.0	98	42;6	98	y	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17181	chr7	140486574;140486864	140486786;140487175	+	140486574	140487175	cassetteExon	ENSMUST00000210080.2	novel	0.05	3.5	72	0;7	72	n	0.05	3.0	62	0;6	62	n	0.00	0.0	25	0;0	25	n	0.02	1.0	64	0;2	64	n	0.04	4.5	100	0;9	100	n	0.05	2.0	36	0;4	36	n	0.06	6.0	88	0;12	88	n	0.03	1.5	42	0;3	42	n	0.06	5.0	74	0;10	74	n	0.00	0.0	88	0;0	88	n	0.03	3.0	108	0;6	108	n	0.18	23.5	107	42;5	107	y	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17182	chr7	140486574;140487106	140486709;140487175	+	140486574	140487175	cassetteExon	ENSMUST00000210080.2	novel	0.17	15.0	72	30;0	72	n	0.08	5.5	62	11;0	62	n	0.06	1.5	25	3;0	25	n	0.16	12.5	64	22;3	64	y	0.10	11.5	100	23;0	100	n	0.06	2.5	36	5;0	36	n	0.16	16.5	88	33;0	88	n	0.12	5.5	42	11;0	42	n	0.13	11.5	74	23;0	74	n	0.22	24.5	88	48;1	88	n	0.12	14.5	108	29;0	108	n	0.10	12.5	107	25;0	107	n	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17183	chr7	140486574;140487106	140486712;140487175	+	140486574	140487175	cassetteExon	ENSMUST00000210080.2	novel	0.42	53.0	72	106;0	72	n	0.42	44.5	62	89;0	62	n	0.38	15.0	25	30;0	25	n	0.42	45.5	64	88;3	64	y	0.48	90.5	100	181;0	100	n	0.30	15.5	36	31;0	36	n	0.51	90.0	88	180;0	88	n	0.41	29.0	42	58;0	42	n	0.47	64.5	74	129;0	74	n	0.50	87.0	88	173;1	88	n	0.42	77.5	108	155;0	108	n	0.39	67.0	107	134;0	107	n	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17184	chr7	140486574;140487106	140487026;140487175	+	140486574	140487175	cassetteExon	ENSMUST00000210080.2	novel	0.43	53.5	72	107;0	72	n	0.36	35.0	62	70;0	62	n	0.37	14.5	25	29;0	25	n	0.45	52.0	64	101;3	64	y	0.45	81.5	100	163;0	100	n	0.26	12.5	36	25;0	36	n	0.36	50.5	88	101;0	88	n	0.40	27.5	42	55;0	42	n	0.40	49.0	74	98;0	74	n	0.46	75.0	88	149;1	88	n	0.38	65.5	108	131;0	108	n	0.34	56.0	107	112;0	107	n	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17185	chr7	140486864	140487172	+	140486864	140487026	A3SS	ENSMUST00000209496.2	novel	0.05	9	158	9	158	n	0.02	3	120	3	120	n	0.23	11	37	11	37	y	0.08	11	131	11	131	n	0.05	12	249	12	249	n	0.00	0	49	0	49	n	0.03	8	251	8	251	n	0.05	5	102	5	102	n	0.06	10	169	10	169	n	0.03	8	248	8	248	n	0.03	6	227	6	227	n	0.03	6	199	6	199	n	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17186	chr7	140487264	140487704	+	140487264	140487470	A3SS&ES	ENSMUST00000210080.2	novel	0.08	114	1246	114	1246	n	0.10	145	1242	145	1242	n	0.13	54	358	54	358	n	0.07	89	1142	89	1142	n	0.08	164	1913	164	1913	n	0.16	71	373	71	373	y	0.06	115	1664	115	1664	n	0.11	95	734	95	734	n	0.08	110	1353	110	1353	n	0.09	198	1908	198	1908	n	0.08	147	1635	147	1635	n	0.07	132	1732	132	1732	n	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17187	chr7	140487264	140487704	+	140487264;140487618	140487470;140487704	ES	ENSMUST00000209817.2	novel	0.12	114	808.5	114	1246;371	n	0.16	145	762.0	145	1242;282	y	0.19	54	227.5	54	358;97	y	0.11	89	696.0	89	1142;250	n	0.12	164	1209.0	164	1913;505	n	0.23	71	240.5	71	373;108	y	0.10	115	1053.0	115	1664;442	n	0.17	95	472.5	95	734;211	y	0.12	110	834.5	110	1353;316	n	0.14	198	1190.5	198	1908;473	n	0.13	147	1013.0	147	1635;391	n	0.11	132	1060.0	132	1732;388	n	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17188	chr7	140521972	140522198	+	140521556	140522198	A5SS	ENSMUST00000164580.3	novel	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.00	0	18	0	18	n	0.00	0	20	0	20	n	0.04	1	24	1	24	n	0.00	0	7	0	7	n	0.00	0	27	0	27	n	0.18	2	9	2	9	y	0.00	0	14	0	14	n	0.00	0	27	0	27	n	0.05	1	21	1	21	n	0.09	3	31	3	31	n	ENSMUSG00000062031.14	Pgghg	chr7	protein_coding	protein glucosylgalactosylhydroxylysine glucosidase
novel_NIR_17189	chr7	140521979	140522198	+	140521556	140522198	A5SS	ENSMUST00000164580.3	novel	0.00	0	15	0	15	n	0.07	1	13	1	13	n	0.25	6	18	6	18	y	0.09	2	20	2	20	n	0.08	2	24	2	24	n	0.00	0	7	0	7	n	0.07	2	27	2	27	n	0.18	2	9	2	9	y	0.00	0	14	0	14	n	0.04	1	27	1	27	n	0.09	2	21	2	21	n	0.11	4	31	4	31	n	ENSMUSG00000062031.14	Pgghg	chr7	protein_coding	protein glucosylgalactosylhydroxylysine glucosidase
novel_NIR_17190	chr7	140535081	140535583	-	140529361	140535583	A3SS	ENSMUST00000211129.2	novel	1.00	28	0	28	0	y	1.00	37	0	37	0	y	1.00	95	0	95	0	y	1.00	21	0	21	0	y	-	-	-	-	-	-	1.00	74	0	74	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	22	0	22	0	y	1.00	37	0	37	0	y	1.00	30	0	30	0	y	1.00	34	0	34	0	y	ENSMUSG00000110104.2	Gm45717	chr7	protein_coding	predicted gene 45717
novel_NIR_17191	chr7	140674858	140680454	-	140674858	140676473	5pMXE	ENSMUST00000209199.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000025494.9	Sigirr	chr7	protein_coding	single immunoglobulin and toll-interleukin 1 receptor (TIR) domain
novel_NIR_17192	chr7	140674858	140680454	-	140674858	140680392	5pMXE	ENSMUST00000210167.2	novel	0.00	0	2	0	2	n	0.33	3	6	3	6	y	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	ENSMUSG00000025494.9	Sigirr	chr7	protein_coding	single immunoglobulin and toll-interleukin 1 receptor (TIR) domain
novel_NIR_17193	chr7	140676549	140680392	-	140674858	140680392	A3SS	ENSMUST00000210167.2	novel	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.25	2	6	2	6	y	0.00	0	7	0	7	n	ENSMUSG00000025494.9	Sigirr	chr7	protein_coding	single immunoglobulin and toll-interleukin 1 receptor (TIR) domain
novel_NIR_17194	chr7	140676549	140680392	-	140675230	140680392	A3SS	ENSMUST00000097958.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000025494.9	Sigirr	chr7	protein_coding	single immunoglobulin and toll-interleukin 1 receptor (TIR) domain
novel_NIR_17195	chr7	140771101	140771255	-	140771140	140771255	A3SS	ENSMUST00000134008.2	novel	0.00	0	13	0	13	n	0.38	15	24	15	24	y	0.26	11	32	11	32	y	0.19	5	21	5	21	y	0.17	6	29	6	29	y	0.00	0	18	0	18	n	0.23	9	30	9	30	y	0.38	8	13	8	13	y	0.00	0	10	0	10	n	0.22	6	21	6	21	y	0.32	10	21	10	21	y	0.16	5	27	5	27	y	ENSMUSG00000025499.19	Hras	chr7	protein_coding	Harvey rat sarcoma virus oncogene
novel_NIR_17196	chr7	140774811	140775821	+	140774530	140775821	A5SS	ENSMUST00000084446.9	novel	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.17	2	10	2	10	y	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	ENSMUSG00000038637.16	Lrrc56	chr7	protein_coding	leucine rich repeat containing 56
novel_NIR_17197	chr7	140774811	140775821	+	140775129	140775821	5pMXE	ENSMUST00000047093.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	ENSMUSG00000038637.16	Lrrc56	chr7	protein_coding	leucine rich repeat containing 56
novel_NIR_17198	chr7	140793008	140793115	-	140792994	140793115	A3SS	ENSMUST00000026573.7	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	ENSMUSG00000025500.13	Lmntd2	chr7	protein_coding	lamin tail domain containing 2
novel_NIR_17199	chr7	140811255	140812335	+	140811255	140812332	A3SS	ENSMUST00000155123.8	novel	0.33	6	12	6	12	y	0.11	1	8	1	8	n	0.30	7	16	7	16	y	0.14	3	18	3	18	n	0.12	3	22	3	22	n	0.27	4	11	4	11	y	0.25	6	18	6	18	y	0.30	6	14	6	14	y	0.17	3	15	3	15	y	0.35	7	13	7	13	y	0.00	0	7	0	7	n	0.33	3	6	3	6	y	ENSMUSG00000038611.18	Phrf1	chr7	protein_coding	PHD and ring finger domains 1
novel_NIR_17200	chr7	140843961	140844040	-	140843961	140844406	A5SS	ENSMUST00000097952.9	novel	0.18	2	9	2	9	y	0.00	0	18	0	18	n	0.02	1	45	1	45	n	0.00	0	21	0	21	n	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.00	0	30	0	30	n	0.00	0	24	0	24	n	0.00	0	18	0	18	n	ENSMUSG00000025498.16	Irf7	chr7	protein_coding	interferon regulatory factor 7
novel_NIR_17201	chr7	140843961	140844040	-	140843961	140844988	A5SS	ENSMUST00000123525.2	novel	0.33	2	4	2	4	y	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025498.16	Irf7	chr7	protein_coding	interferon regulatory factor 7
novel_NIR_17202	chr7	140843961	140844638	-	140843961	140844988	A5SS	ENSMUST00000123525.2	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	5	0	5	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025498.16	Irf7	chr7	protein_coding	interferon regulatory factor 7
novel_NIR_17203	chr7	140844228	140844988	-	140843961	140844988	A3SS	ENSMUST00000123525.2	novel	0.00	0	4	0	4	n	1.00	2	0	2	0	y	0.57	4	3	4	3	n	0.17	1	5	1	5	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000025498.16	Irf7	chr7	protein_coding	interferon regulatory factor 7
novel_NIR_17204	chr7	140849924	140852014	-	140851633	140852014	A3SS&ES	ENSMUST00000210124.2	novel	0.00	0	15	0	15	n	0.32	9	19	9	19	y	0.00	0	36	0	36	n	0.07	2	25	2	25	n	0.00	0	24	0	24	n	0.00	0	20	0	20	n	0.13	4	27	4	27	n	0.18	3	14	3	14	y	0.00	0	17	0	17	n	0.00	0	33	0	33	n	0.17	4	20	4	20	y	0.06	2	30	2	30	n	ENSMUSG00000025497.16	Cdhr5	chr7	protein_coding	cadherin-related family member 5
novel_NIR_17205	chr7	140849924	140852014	-	140851915	140852014	A3SS&ES	ENSMUST00000167263.9	novel	0.00	0	60	0	60	n	0.18	9	42	9	42	y	0.00	0	101	0	101	n	0.03	2	65	2	65	n	0.00	0	106	0	106	n	0.00	0	60	0	60	n	0.04	4	103	4	103	n	0.07	3	38	3	38	n	0.00	0	46	0	46	n	0.00	0	86	0	86	n	0.06	4	67	4	67	n	0.02	2	80	2	80	n	ENSMUSG00000025497.16	Cdhr5	chr7	protein_coding	cadherin-related family member 5
novel_NIR_17206	chr7	140852094	140852176	-	140849930	140852176	A3SS	ENSMUST00000210773.2	novel	0.38	3	5	3	5	y	0.55	6	5	6	5	y	0.00	0	2	0	2	n	0.57	8	6	8	6	y	0.50	4	4	4	4	y	-	-	-	-	-	-	0.60	6	4	6	4	y	-	-	-	-	-	-	0.20	1	4	1	4	n	0.42	8	11	8	11	y	0.50	2	2	2	2	y	0.50	1	1	1	1	n	ENSMUSG00000025497.16	Cdhr5	chr7	protein_coding	cadherin-related family member 5
novel_NIR_17207	chr7	140877529	140887400	-	140877529	140890675	A5SS	ENSMUST00000209600.2	novel	0.29	2	5	2	5	y	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000058886.10	Deaf1	chr7	protein_coding	DEAF1, transcription factor
novel_NIR_17208	chr7	140890374	140890675	-	140877529	140890675	A3SS	ENSMUST00000209600.2	novel	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	ENSMUSG00000058886.10	Deaf1	chr7	protein_coding	DEAF1, transcription factor
novel_NIR_17209	chr7	140890374	140890675	-	140881599	140890675	A3SS	ENSMUST00000211537.2	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.20	1	4	1	4	n	-	-	-	-	-	-	ENSMUSG00000058886.10	Deaf1	chr7	protein_coding	DEAF1, transcription factor
novel_NIR_17210	chr7	140890374	140890675	-	140881602	140890675	A3SS	ENSMUST00000080553.9	novel	0.00	0	17	0	17	n	0.00	0	24	0	24	n	0.00	0	19	0	19	n	0.00	0	21	0	21	n	0.00	0	34	0	34	n	0.15	2	11	2	11	y	0.00	0	36	0	36	n	0.00	0	10	0	10	n	0.00	0	24	0	24	n	0.00	0	34	0	34	n	0.03	1	36	1	36	n	0.00	0	31	0	31	n	ENSMUSG00000058886.10	Deaf1	chr7	protein_coding	DEAF1, transcription factor
novel_NIR_17211	chr7	140890374	140890675	-	140887540	140890675	A3SS	ENSMUST00000211146.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000058886.10	Deaf1	chr7	protein_coding	DEAF1, transcription factor
novel_NIR_17212	chr7	140912921	140913572	+	140912921	140913561	A3SS	ENSMUST00000133012.8	novel	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.25	1	3	1	3	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	1.00	4	0	4	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.50	1	1	1	1	n	ENSMUSG00000025505.17	Tmem80	chr7	protein_coding	transmembrane protein 80
novel_NIR_17213	chr7	140989853	140990736	-	140989853	140990691	A5SS	ENSMUST00000106008.3	novel	0.00	0	34	0	34	n	0.05	2	39	2	39	n	0.00	0	48	0	48	n	0.10	4	36	4	36	n	0.00	0	60	0	60	n	0.00	0	33	0	33	n	0.16	9	49	9	49	y	0.04	1	25	1	25	n	0.03	1	28	1	28	n	0.04	2	50	2	50	n	0.04	2	54	2	54	n	0.00	0	66	0	66	n	ENSMUSG00000051007.16	Gatd1	chr7	protein_coding	glutamine amidotransferase like class 1 domain containing 1
novel_NIR_17214	chr7	140990798	140991711	-	140990798	140991726	A5SS	ENSMUST00000127556.2	novel	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000051007.16	Gatd1	chr7	protein_coding	glutamine amidotransferase like class 1 domain containing 1
novel_NIR_17215	chr7	141011857	141011934	-	141011462	141011934	A3SS	ENSMUST00000106006.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	7	0	7	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000019082.19	Slc25a22	chr7	protein_coding	solute carrier family 25 (mitochondrial carrier, glutamate), member 22
novel_NIR_17216	chr7	141011861	141011934	-	141011462	141011934	A3SS	ENSMUST00000106006.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000019082.19	Slc25a22	chr7	protein_coding	solute carrier family 25 (mitochondrial carrier, glutamate), member 22
novel_NIR_17217	chr7	141011861	141012576	-	141012048	141012576	3pMXE	ENSMUST00000201072.4	novel	1.00	2	0	2	0	y	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	9	0	9	n	ENSMUSG00000019082.19	Slc25a22	chr7	protein_coding	solute carrier family 25 (mitochondrial carrier, glutamate), member 22
novel_NIR_17218	chr7	141011861	141012576	-	141012071	141012576	A3SS&ES	ENSMUST00000124266.8	novel	0.40	2	3	2	3	y	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	ENSMUSG00000019082.19	Slc25a22	chr7	protein_coding	solute carrier family 25 (mitochondrial carrier, glutamate), member 22
novel_NIR_17219	chr7	141012052	141012177	-	141012052	141012527	A5SS	ENSMUST00000184518.8	novel	0.00	0	2	0	2	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000019082.19	Slc25a22	chr7	protein_coding	solute carrier family 25 (mitochondrial carrier, glutamate), member 22
novel_NIR_17220	chr7	141012052	141012540	-	141012052	141012527	A5SS	ENSMUST00000184518.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000019082.19	Slc25a22	chr7	protein_coding	solute carrier family 25 (mitochondrial carrier, glutamate), member 22
novel_NIR_17221	chr7	141014242	141014342	-	141014242	141014382	A5SS	ENSMUST00000133021.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	ENSMUSG00000019082.19	Slc25a22	chr7	protein_coding	solute carrier family 25 (mitochondrial carrier, glutamate), member 22
novel_NIR_17222	chr7	141014242	141014342	-	141014242	141014444	A5SS	ENSMUST00000106007.10	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	3	0	3	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.50	4	4	4	4	y	1.00	1	0	1	0	n	ENSMUSG00000019082.19	Slc25a22	chr7	protein_coding	solute carrier family 25 (mitochondrial carrier, glutamate), member 22
novel_NIR_17223	chr7	141014242	141014342	-	141014242	141014500	A5SS	ENSMUST00000202840.4	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	5	0	5	n	0.75	3	1	3	1	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.25	2	6	2	6	y	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.57	4	3	4	3	y	0.33	1	2	1	2	n	ENSMUSG00000019082.19	Slc25a22	chr7	protein_coding	solute carrier family 25 (mitochondrial carrier, glutamate), member 22
novel_NIR_17224	chr7	141014242	141014342	-	141014242	141017468	A5SS	ENSMUST00000106006.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	ENSMUSG00000019082.19	Slc25a22	chr7	protein_coding	solute carrier family 25 (mitochondrial carrier, glutamate), member 22
novel_NIR_17225	chr7	141014242	141014342	-	141014242	141017482	A5SS	ENSMUST00000019226.14	novel	0.00	0	17	0	17	n	0.03	1	32	1	32	n	0.00	0	21	0	21	n	0.10	3	26	3	26	n	0.00	0	34	0	34	n	0.00	0	23	0	23	n	0.06	2	34	2	34	n	0.00	0	17	0	17	n	0.04	1	23	1	23	n	0.00	0	35	0	35	n	0.18	4	18	4	18	y	0.03	1	31	1	31	n	ENSMUSG00000019082.19	Slc25a22	chr7	protein_coding	solute carrier family 25 (mitochondrial carrier, glutamate), member 22
novel_NIR_17226	chr7	141014242	141014771	-	141014242	141014382	5pMXE	ENSMUST00000133021.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000019082.19	Slc25a22	chr7	protein_coding	solute carrier family 25 (mitochondrial carrier, glutamate), member 22
novel_NIR_17227	chr7	141014242	141014771	-	141014242	141014444	5pMXE	ENSMUST00000106007.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	ENSMUSG00000019082.19	Slc25a22	chr7	protein_coding	solute carrier family 25 (mitochondrial carrier, glutamate), member 22
novel_NIR_17228	chr7	141014242	141014771	-	141014242	141014500	5pMXE	ENSMUST00000202840.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.29	2	5	2	5	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000019082.19	Slc25a22	chr7	protein_coding	solute carrier family 25 (mitochondrial carrier, glutamate), member 22
novel_NIR_17229	chr7	141014242	141014771	-	141014242	141017468	A5SS	ENSMUST00000106006.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000019082.19	Slc25a22	chr7	protein_coding	solute carrier family 25 (mitochondrial carrier, glutamate), member 22
novel_NIR_17230	chr7	141014242	141014775	-	141014242	141014382	5pMXE	ENSMUST00000133021.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000019082.19	Slc25a22	chr7	protein_coding	solute carrier family 25 (mitochondrial carrier, glutamate), member 22
novel_NIR_17231	chr7	141014242	141014775	-	141014242	141014444	5pMXE	ENSMUST00000106007.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	ENSMUSG00000019082.19	Slc25a22	chr7	protein_coding	solute carrier family 25 (mitochondrial carrier, glutamate), member 22
novel_NIR_17232	chr7	141014242	141014775	-	141014242	141014500	5pMXE	ENSMUST00000202840.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000019082.19	Slc25a22	chr7	protein_coding	solute carrier family 25 (mitochondrial carrier, glutamate), member 22
novel_NIR_17233	chr7	141014242	141014775	-	141014242	141017468	A5SS	ENSMUST00000106006.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000019082.19	Slc25a22	chr7	protein_coding	solute carrier family 25 (mitochondrial carrier, glutamate), member 22
novel_NIR_17234	chr7	141014242	141015791	-	141014242	141014382	5pMXE	ENSMUST00000133021.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000019082.19	Slc25a22	chr7	protein_coding	solute carrier family 25 (mitochondrial carrier, glutamate), member 22
novel_NIR_17235	chr7	141014242	141015791	-	141014242	141014444	5pMXE	ENSMUST00000106007.10	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	ENSMUSG00000019082.19	Slc25a22	chr7	protein_coding	solute carrier family 25 (mitochondrial carrier, glutamate), member 22
novel_NIR_17236	chr7	141014242	141015791	-	141014242	141014500	5pMXE	ENSMUST00000202840.4	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.17	1	5	1	5	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.29	2	5	2	5	y	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000019082.19	Slc25a22	chr7	protein_coding	solute carrier family 25 (mitochondrial carrier, glutamate), member 22
novel_NIR_17237	chr7	141014242	141015791	-	141014242	141017468	A5SS	ENSMUST00000106006.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000019082.19	Slc25a22	chr7	protein_coding	solute carrier family 25 (mitochondrial carrier, glutamate), member 22
novel_NIR_17238	chr7	141020066	141020161	-	141020066	141020144	A5SS	ENSMUST00000190068.7	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.10	1	9	1	9	n	0.15	2	11	2	11	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000025507.14	Pidd1	chr7	protein_coding	p53 induced death domain protein 1
novel_NIR_17239	chr7	141027601	141027821	+	141027654	141027821	5pMXE	ENSMUST00000106004.8	novel	1.00	21	0	21	0	y	0.96	25	1	25	1	y	1.00	61	0	61	0	y	1.00	23	0	23	0	y	1.00	36	0	36	0	y	0.94	34	2	34	2	y	0.98	42	1	42	1	y	1.00	30	0	30	0	y	1.00	14	0	14	0	y	0.95	21	1	21	1	y	1.00	20	0	20	0	y	0.95	20	1	20	1	y	ENSMUSG00000025508.14	Rplp2	chr7	protein_coding	ribosomal protein, large P2
novel_NIR_17240	chr7	141035287	141037186	+	141035577	141037186	5pMXE	ENSMUST00000165487.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025509.16	Pnpla2	chr7	protein_coding	patatin-like phospholipase domain containing 2
novel_NIR_17241	chr7	141035287	141037186	+	141036562	141037186	A5SS&ES	ENSMUST00000026583.15	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.30	3	7	3	7	y	1.00	3	0	3	0	y	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	ENSMUSG00000025509.16	Pnpla2	chr7	protein_coding	patatin-like phospholipase domain containing 2
novel_NIR_17242	chr7	141037570	141037982	+	141037570	141037997	A3SS	ENSMUST00000164924.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	0.43	3	4	3	4	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000025509.16	Pnpla2	chr7	protein_coding	patatin-like phospholipase domain containing 2
novel_NIR_17243	chr7	141037570	141037982	+	141037570	141038020	A3SS	ENSMUST00000169665.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025509.16	Pnpla2	chr7	protein_coding	patatin-like phospholipase domain containing 2
novel_NIR_17244	chr7	141038403	141038547	+	141038403	141038758	A3SS	ENSMUST00000064151.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	10	0	10	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025509.16	Pnpla2	chr7	protein_coding	patatin-like phospholipase domain containing 2
novel_NIR_17245	chr7	141189828	141191246	+	141189828	141191249	A3SS	ENSMUST00000003038.12	novel	0.34	28	54	28	54	y	0.08	4	45	4	45	n	0.28	31	81	31	81	y	0.30	27	63	27	63	y	0.24	26	83	26	83	y	0.29	25	61	25	61	y	0.33	35	71	35	71	y	0.18	15	70	15	70	y	0.30	19	45	19	45	y	0.29	27	66	27	66	y	0.24	18	56	18	56	y	0.31	28	61	28	61	y	ENSMUSG00000002957.12	Ap2a2	chr7	protein_coding	adaptor-related protein complex 2, alpha 2 subunit
novel_NIR_17246	chr7	141563311	141563990	-	141563315	141563990	A3SS	ENSMUST00000211000.2	novel	0.04	3	74	3	74	n	0.01	1	70	1	70	n	0.07	6	79	6	79	n	0.06	4	64	4	64	n	0.05	5	96	5	96	n	0.00	0	33	0	33	n	0.08	9	107	9	107	n	0.00	0	45	0	45	n	0.15	11	61	11	61	y	0.07	8	105	8	105	n	0.00	0	71	0	71	n	0.09	10	102	10	102	n	ENSMUSG00000025147.8	Mob2	chr7	protein_coding	MOB kinase activator 2
novel_NIR_17247	chr7	141569909	141570072	-	141569909	141570131	A5SS	ENSMUST00000210684.2	novel	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	ENSMUSG00000025147.8	Mob2	chr7	protein_coding	MOB kinase activator 2
novel_NIR_17248	chr7	141570242	141608055	-	141570242	141578011	A5SS&ES	ENSMUST00000211505.2	novel	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	1.00	4	0	4	0	y	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000025147.8	Mob2	chr7	protein_coding	MOB kinase activator 2
novel_NIR_17249	chr7	141570242	141608055	-	141570242	141579567	5pMXE	ENSMUST00000209732.2	novel	0.00	0	1	0	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	4	0	4	0	y	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000025147.8	Mob2	chr7	protein_coding	MOB kinase activator 2
novel_NIR_17250	chr7	141570242	141608055	-	141570242	141586873	A5SS&ES	ENSMUST00000211000.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025147.8	Mob2	chr7	protein_coding	MOB kinase activator 2
novel_NIR_17251	chr7	141570242	141608055	-	141570242	141613874	A5SS	ENSMUST00000211206.2	novel	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	6	0	6	n	1.00	4	0	4	0	y	0.00	0	4	0	4	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	ENSMUSG00000025147.8	Mob2	chr7	protein_coding	MOB kinase activator 2
novel_NIR_17252	chr7	141570242	141608055	-	141570242	141614722	A5SS	ENSMUST00000084418.4	novel	0.00	0	18	0	18	n	0.04	1	23	1	23	n	0.00	0	33	0	33	n	0.00	0	31	0	31	n	0.00	0	39	0	39	n	0.16	4	21	4	21	y	0.00	0	42	0	42	n	0.04	1	26	1	26	n	0.00	0	32	0	32	n	0.00	0	36	0	36	n	0.00	0	28	0	28	n	0.00	0	39	0	39	n	ENSMUSG00000025147.8	Mob2	chr7	protein_coding	MOB kinase activator 2
novel_NIR_17253	chr7	141570242	141614124	-	141570242	141578011	A5SS&ES	ENSMUST00000211505.2	novel	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.75	3	1	3	1	y	-	-	-	-	-	-	0.75	6	2	6	2	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	3	3	3	3	y	0.50	1	1	1	1	n	0.75	6	2	6	2	y	ENSMUSG00000025147.8	Mob2	chr7	protein_coding	MOB kinase activator 2
novel_NIR_17254	chr7	141570242	141614124	-	141570242	141579567	5pMXE	ENSMUST00000209732.2	novel	0.50	1	1	1	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.60	3	2	3	2	y	-	-	-	-	-	-	0.86	6	1	6	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.50	1	1	1	1	n	1.00	6	0	6	0	y	ENSMUSG00000025147.8	Mob2	chr7	protein_coding	MOB kinase activator 2
novel_NIR_17255	chr7	141570242	141614124	-	141570242	141586873	A5SS&ES	ENSMUST00000211000.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	6	0	6	0	y	ENSMUSG00000025147.8	Mob2	chr7	protein_coding	MOB kinase activator 2
novel_NIR_17256	chr7	141570242	141614124	-	141570242	141613874	A5SS	ENSMUST00000211206.2	novel	1.00	1	0	1	0	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.33	3	6	3	6	y	-	-	-	-	-	-	0.60	6	4	6	4	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.60	3	2	3	2	y	0.14	1	6	1	6	n	0.55	6	5	6	5	y	ENSMUSG00000025147.8	Mob2	chr7	protein_coding	MOB kinase activator 2
novel_NIR_17257	chr7	14161975	14162075	-	14161975	14170312	A5SS	ENSMUST00000211800.2	novel	0.11	1	8	1	8	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	19	0	19	n	0.21	3	11	3	11	y	-	-	-	-	-	-	0.05	1	20	1	20	n	-	-	-	-	-	-	0.00	0	27	0	27	n	0.07	2	25	2	25	n	0.00	0	22	0	22	n	0.00	0	6	0	6	n	ENSMUSG00000030378.16	Sult2a8	chr7	protein_coding	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8
novel_NIR_17258	chr7	14161975	14162075	-	14161975	14178795	A5SS	ENSMUST00000209972.2	novel	0.25	1	3	1	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.60	3	2	3	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	12	0	12	n	0.12	2	14	2	14	n	0.00	0	12	0	12	n	0.00	0	1	0	1	n	ENSMUSG00000030378.16	Sult2a8	chr7	protein_coding	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8
novel_NIR_17259	chr7	14161975	14173104	-	14161975	14170312	5pMXE	ENSMUST00000211800.2	novel	0.47	7	8	7	8	y	0.00	0	7	0	7	n	-	-	-	-	-	-	0.24	6	19	6	19	y	0.27	4	11	4	11	y	-	-	-	-	-	-	0.00	0	20	0	20	n	-	-	-	-	-	-	0.07	2	27	2	27	n	0.32	12	25	12	25	y	0.27	8	22	8	22	y	0.33	3	6	3	6	y	ENSMUSG00000030378.16	Sult2a8	chr7	protein_coding	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8
novel_NIR_17260	chr7	14161975	14173104	-	14161975	14178795	A5SS	ENSMUST00000209972.2	novel	0.70	7	3	7	3	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.55	6	5	6	5	y	0.67	4	2	4	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.14	2	12	2	12	n	0.46	12	14	12	14	y	0.40	8	12	8	12	y	0.75	3	1	3	1	y	ENSMUSG00000030378.16	Sult2a8	chr7	protein_coding	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8
novel_NIR_17261	chr7	14161975	14173487	-	14161975	14170312	5pMXE	ENSMUST00000211800.2	novel	0.33	4	8	4	8	y	0.22	2	7	2	7	y	-	-	-	-	-	-	0.24	6	19	6	19	y	0.15	2	11	2	11	y	-	-	-	-	-	-	0.05	1	20	1	20	n	-	-	-	-	-	-	0.07	2	27	2	27	n	0.24	8	25	8	25	y	0.27	8	22	8	22	y	0.00	0	6	0	6	n	ENSMUSG00000030378.16	Sult2a8	chr7	protein_coding	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8
novel_NIR_17262	chr7	14161975	14173487	-	14161975	14178795	A5SS	ENSMUST00000209972.2	novel	0.57	4	3	4	3	y	0.40	2	3	2	3	y	-	-	-	-	-	-	0.55	6	5	6	5	y	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.14	2	12	2	12	n	0.36	8	14	8	14	y	0.40	8	12	8	12	y	0.00	0	1	0	1	n	ENSMUSG00000030378.16	Sult2a8	chr7	protein_coding	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8
novel_NIR_17263	chr7	14161975	14173539	-	14161975	14170312	5pMXE	ENSMUST00000211800.2	novel	0.43	6	8	6	8	y	0.36	4	7	4	7	y	-	-	-	-	-	-	0.37	11	19	11	19	y	0.39	7	11	7	11	y	-	-	-	-	-	-	0.13	3	20	3	20	n	-	-	-	-	-	-	0.21	7	27	7	27	y	0.38	15	25	15	25	y	0.35	12	22	12	22	y	0.45	5	6	5	6	y	ENSMUSG00000030378.16	Sult2a8	chr7	protein_coding	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8
novel_NIR_17264	chr7	14161975	14173539	-	14161975	14178795	A5SS	ENSMUST00000209972.2	novel	0.67	6	3	6	3	y	0.57	4	3	4	3	y	-	-	-	-	-	-	0.69	11	5	11	5	y	0.78	7	2	7	2	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.37	7	12	7	12	y	0.52	15	14	15	14	y	0.50	12	12	12	12	y	0.83	5	1	5	1	y	ENSMUSG00000030378.16	Sult2a8	chr7	protein_coding	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8
novel_NIR_17265	chr7	14161975	14173539	-	14161975	14180367	A5SS	ENSMUST00000209425.2	novel	0.06	6	89	6	89	n	0.05	4	70	4	70	n	0.00	0	5	0	5	n	0.05	11	208	11	208	n	0.21	7	26	7	26	y	0.00	0	1	0	1	n	0.09	3	32	3	32	n	0.00	0	1	0	1	n	0.02	7	309	7	309	n	0.04	15	354	15	354	n	0.06	12	181	12	181	n	0.04	5	127	5	127	n	ENSMUSG00000030378.16	Sult2a8	chr7	protein_coding	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8
novel_NIR_17266	chr7	141925047	141925568	-	141925047	141925899	A5SS	ENSMUST00000059223.15	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045777.15	Ifitm10	chr7	protein_coding	interferon induced transmembrane protein 10
novel_NIR_17267	chr7	141925047	141925568	-	141925047	141926418	A5SS	ENSMUST00000123543.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045777.15	Ifitm10	chr7	protein_coding	interferon induced transmembrane protein 10
novel_NIR_17268	chr7	141925047	141925568	-	141925047	141927313	A5SS	ENSMUST00000105988.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000045777.15	Ifitm10	chr7	protein_coding	interferon induced transmembrane protein 10
novel_NIR_17269	chr7	141925047	141925568	-	141925047	141930338	A5SS	ENSMUST00000209263.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000110040.2	Gm49369	chr7	protein_coding	predicted gene, 49369
novel_NIR_17270	chr7	141925047	141925568	-	141925047	141930570	A5SS	ENSMUST00000133843.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000110040.2	Gm49369	chr7	protein_coding	predicted gene, 49369
novel_NIR_17271	chr7	141930907	141931063	-	141930907	141931088	A5SS	ENSMUST00000066401.7	novel	0.67	4	2	4	2	y	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000007891.17	Ctsd	chr7	protein_coding	cathepsin D
novel_NIR_17272	chr7	142046872	142050626	-	142046872	142050612	A5SS	ENSMUST00000238347.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.44	4	5	4	5	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000043795.11	Prr33	chr7	protein_coding	proline rich 33
novel_NIR_17273	chr7	142046872	142050626	-	142046872	142060174	A5SS	ENSMUST00000054910.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000043795.11	Prr33	chr7	protein_coding	proline rich 33
novel_NIR_17274	chr7	142057802	142057990	+	142057802	142062072	A3SS	ENSMUST00000128294.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.41	7	10	7	10	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000061723.19	Tnnt3	chr7	protein_coding	troponin T3, skeletal, fast
novel_NIR_17275	chr7	142087354	142088742	+	142086567	142088742	A5SS	ENSMUST00000137345.9	novel	1.00	2	0	2	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037772.14	Mrpl23	chr7	protein_coding	mitochondrial ribosomal protein L23
novel_NIR_17276	chr7	142087354	142088742	+	142086978	142088742	A5SS	ENSMUST00000210803.2	novel	1.00	2	0	2	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037772.14	Mrpl23	chr7	protein_coding	mitochondrial ribosomal protein L23
novel_NIR_17277	chr7	142087354	142088742	+	142087745	142088742	5pMXE	ENSMUST00000210662.2	novel	1.00	2	0	2	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037772.14	Mrpl23	chr7	protein_coding	mitochondrial ribosomal protein L23
novel_NIR_17278	chr7	142087527	142088742	+	142086567	142088742	A5SS	ENSMUST00000137345.9	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000037772.14	Mrpl23	chr7	protein_coding	mitochondrial ribosomal protein L23
novel_NIR_17279	chr7	142087527	142088742	+	142086978	142088742	A5SS	ENSMUST00000210803.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000037772.14	Mrpl23	chr7	protein_coding	mitochondrial ribosomal protein L23
novel_NIR_17280	chr7	142087527	142088742	+	142087745	142088742	A5SS	ENSMUST00000210662.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000037772.14	Mrpl23	chr7	protein_coding	mitochondrial ribosomal protein L23
novel_NIR_17281	chr7	14210767	14210951	-	14199196	14210951	A3SS	ENSMUST00000210034.2	novel	0.00	0	22	0	22	n	0.03	1	29	1	29	n	0.00	0	2	0	2	n	0.00	0	23	0	23	n	0.00	0	19	0	19	n	1.00	1	0	1	0	n	0.00	0	36	0	36	n	0.00	0	1	0	1	n	0.21	3	11	3	11	y	0.00	0	40	0	40	n	0.00	0	24	0	24	n	0.00	0	9	0	9	n	ENSMUSG00000094156.3	Sult2a7	chr7	protein_coding	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 7
novel_NIR_17282	chr7	14210767	14210951	-	14207359	14210951	A3SS	ENSMUST00000108524.4	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000094156.3	Sult2a7	chr7	protein_coding	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 7
novel_NIR_17283	chr7	142616114	142616230	+	142607083	142616230	A5SS	ENSMUST00000207448.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000037706.18	Cd81	chr7	protein_coding	CD81 antigen
novel_NIR_17284	chr7	142616114	142616230	+	142612387	142616230	A5SS	ENSMUST00000141954.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000037706.18	Cd81	chr7	protein_coding	CD81 antigen
novel_NIR_17285	chr7	142624029	142624538	+	142624029	142624529	A3SS	ENSMUST00000105920.8	novel	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.10	1	9	1	9	n	1.00	2	0	2	0	y	0.00	0	11	0	11	n	0.25	2	6	2	6	y	0.00	0	4	0	4	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.33	2	4	2	4	y	ENSMUSG00000045752.14	Tssc4	chr7	protein_coding	tumor-suppressing subchromosomal transferable fragment 4
novel_NIR_17286	chr7	143014412	143014590	-	143014415	143014590	A3SS	ENSMUST00000037287.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000037664.14	Cdkn1c	chr7	protein_coding	cyclin-dependent kinase inhibitor 1C (P57)
novel_NIR_17287	chr7	143014412	143014590	-	143014453	143014590	A3SS	ENSMUST00000167912.9	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037664.14	Cdkn1c	chr7	protein_coding	cyclin-dependent kinase inhibitor 1C (P57)
novel_NIR_17288	chr7	143045590	143046626	+	143045590	143046543	A3SS	ENSMUST00000141988.8	novel	0.16	7	38	7	38	y	0.19	3	13	3	13	y	0.60	3	2	3	2	y	0.26	7	20	7	20	y	0.29	11	27	11	27	y	0.00	0	4	0	4	n	0.15	4	23	4	23	y	0.33	2	4	2	4	y	0.44	11	14	11	14	y	0.23	10	33	10	33	y	0.25	7	21	7	21	y	0.37	14	24	14	24	y	ENSMUSG00000000154.17	Slc22a18	chr7	protein_coding	solute carrier family 22 (organic cation transporter), member 18
novel_NIR_17289	chr7	143095065	143095485	-	143094467	143095485	A3SS	ENSMUST00000207870.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000059119.10	Nap1l4	chr7	protein_coding	nucleosome assembly protein 1-like 4
novel_NIR_17290	chr7	143095515	143096745	-	143095515	143099866	A5SS	ENSMUST00000208093.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000059119.10	Nap1l4	chr7	protein_coding	nucleosome assembly protein 1-like 4
novel_NIR_17291	chr7	143095515	143096745	-	143095515	143102474	A5SS	ENSMUST00000209098.2	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000059119.10	Nap1l4	chr7	protein_coding	nucleosome assembly protein 1-like 4
novel_NIR_17292	chr7	143095515	143102484	-	143095515	143102474	A5SS	ENSMUST00000209098.2	novel	0.43	3	4	3	4	y	1.00	4	0	4	0	y	0.00	0	7	0	7	n	0.88	15	2	15	2	y	1.00	6	0	6	0	y	-	-	-	-	-	-	0.33	2	4	2	4	y	0.62	5	3	5	3	y	1.00	2	0	2	0	y	0.55	6	5	6	5	y	0.33	1	2	1	2	n	1.00	4	0	4	0	y	ENSMUSG00000059119.10	Nap1l4	chr7	protein_coding	nucleosome assembly protein 1-like 4
novel_NIR_17293	chr7	143095515	143102484	-	143095515	143102779	A5SS	ENSMUST00000072727.7	novel	0.11	3	25	3	25	n	0.20	4	16	4	16	y	0.00	0	39	0	39	n	0.34	15	29	15	29	y	0.13	6	41	6	41	n	0.00	0	21	0	21	n	0.06	2	32	2	32	n	0.24	5	16	5	16	y	0.07	2	26	2	26	n	0.19	6	26	6	26	y	0.03	1	29	1	29	n	0.13	4	26	4	26	n	ENSMUSG00000059119.10	Nap1l4	chr7	protein_coding	nucleosome assembly protein 1-like 4
novel_NIR_17294	chr7	143095515	143102484	-	143095515;143099917	143099866;143102484	ES	ENSMUST00000208093.2	novel	1.00	3	0.0	3	0;0	y	1.00	4	0.0	4	0;0	y	0.00	0	2.5	0	3;2	n	0.94	15	1.0	15	2;0	y	1.00	6	0.0	6	0;0	y	0.00	0	0.5	0	1;0	n	1.00	2	0.0	2	0;0	y	0.91	5	0.5	5	1;0	y	0.40	2	3.0	2	4;2	y	1.00	6	0.0	6	0;0	y	0.67	1	0.5	1	1;0	n	1.00	4	0.0	4	0;0	y	ENSMUSG00000059119.10	Nap1l4	chr7	protein_coding	nucleosome assembly protein 1-like 4
novel_NIR_17295	chr7	143222329	143223172	-	143222329	143223719	A5SS	ENSMUST00000035742.14	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000037613.17	Tnfrsf23	chr7	protein_coding	tumor necrosis factor receptor superfamily, member 23
novel_NIR_17296	chr7	143256508	143258247	-	143256508;143257072	143256888;143258247	ES	ENSMUST00000119499.8	novel	0.00	0	0.5	0	0;1	n	0.00	0	0.5	0	1;0	n	0.00	0	2.0	0	2;2	n	0.00	0	2.5	0	2;3	n	-	-	-	-	-	-	0.00	0	0.5	0	0;1	n	0.00	0	2.5	0	5;0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.80	4	1.0	4	0;2	y	0.00	0	4.5	0	1;8	n	0.00	0	2.0	0	2;2	n	ENSMUSG00000037606.19	Osbpl5	chr7	protein_coding	oxysterol binding protein-like 5
novel_NIR_17297	chr7	143256508	143258247	-	143257072	143258247	3pMXE	ENSMUST00000149736.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	4	2	4	2	y	0.00	0	8	0	8	n	0.00	0	2	0	2	n	ENSMUSG00000037606.19	Osbpl5	chr7	protein_coding	oxysterol binding protein-like 5
novel_NIR_17298	chr7	143369964	143376396	-	143369964;143374969	143374909;143376396	ES	ENSMUST00000156779.2	novel	0.00	0	6.0	0	0;12	n	0.00	0	8.0	0	0;16	n	0.00	0	14.0	0	0;28	n	0.00	0	12.0	0	0;24	n	0.06	1	15.0	1	0;30	n	0.00	0	6.0	0	0;12	n	0.00	0	8.5	0	0;17	n	0.12	1	7.5	1	0;15	n	0.00	0	14.0	0	0;28	n	0.17	2	9.5	2	0;19	y	0.00	0	14.5	0	0;29	n	0.00	0	15.5	0	0;31	n	ENSMUSG00000031090.15	Nadsyn1	chr7	protein_coding	NAD synthetase 1
novel_NIR_17299	chr7	143383639	143383876	+	143377277	143383876	A5SS	ENSMUST00000128454.8	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	0.67	2	1	2	1	y	1.00	2	0	2	0	n	1.00	6	0	6	0	y	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000058454.16	Dhcr7	chr7	protein_coding	7-dehydrocholesterol reductase
novel_NIR_17300	chr7	143383639	143383876	+	143383476	143383876	A5SS	ENSMUST00000124340.8	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000058454.16	Dhcr7	chr7	protein_coding	7-dehydrocholesterol reductase
novel_NIR_17301	chr7	143384136	143386456	+	143384136	143390375	A3SS	ENSMUST00000125564.2	novel	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.17	3	15	3	15	y	0.44	4	5	4	5	y	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	ENSMUSG00000058454.16	Dhcr7	chr7	protein_coding	7-dehydrocholesterol reductase
novel_NIR_17302	chr7	143386657	143387505	+	143384002	143387505	A5SS	ENSMUST00000143338.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000058454.16	Dhcr7	chr7	protein_coding	7-dehydrocholesterol reductase
novel_NIR_17303	chr7	143386657	143387505	+	143386657	143390375	A3SS	ENSMUST00000207143.2	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000058454.16	Dhcr7	chr7	protein_coding	7-dehydrocholesterol reductase
novel_NIR_17304	chr7	143390466	143394170	+	143390466	143394895	A3SS	ENSMUST00000208631.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	7	0	7	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000058454.16	Dhcr7	chr7	protein_coding	7-dehydrocholesterol reductase
novel_NIR_17305	chr7	143645526	143677901	+	143645526	143682076	A3SS	ENSMUST00000105902.8	novel	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.15	2	11	2	11	y	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	ENSMUSG00000037541.23	Shank2	chr7	protein_coding	SH3 and multiple ankyrin repeat domains 2
novel_NIR_17306	chr7	143682971	143684630	+	143682971	143733492	A3SS	ENSMUST00000213146.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000037541.23	Shank2	chr7	protein_coding	SH3 and multiple ankyrin repeat domains 2
novel_NIR_17307	chr7	143960942	143963199	+	143961813	143963199	A5SS&ES	ENSMUST00000105902.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000037541.23	Shank2	chr7	protein_coding	SH3 and multiple ankyrin repeat domains 2
novel_NIR_17308	chr7	143960969	143963199	+	143960969;143961813	143961793;143963199	ES	ENSMUST00000105902.8	novel	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037541.23	Shank2	chr7	protein_coding	SH3 and multiple ankyrin repeat domains 2
novel_NIR_17309	chr7	144038948	144045189	-	144038948	144040436	5pMXE	ENSMUST00000183063.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000037519.18	Ppfia1	chr7	protein_coding	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1
novel_NIR_17310	chr7	144038948	144045189	-	144042996	144045189	A3SS&ES	ENSMUST00000168134.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	0.78	7	2	7	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	3	0	3	n	ENSMUSG00000037519.18	Ppfia1	chr7	protein_coding	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1
novel_NIR_17311	chr7	144165181	144165351	-	144165183	144165351	A3SS	ENSMUST00000121758.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.25	2	6	2	6	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000031075.20	Ano1	chr7	protein_coding	anoctamin 1, calcium activated chloride channel
novel_NIR_17312	chr7	144471417	144472964	+	144471417	144472961	A3SS	ENSMUST00000033388.12	novel	0.00	0	45	0	45	n	0.00	0	25	0	25	n	0.02	1	44	1	44	n	0.21	10	37	10	37	y	0.00	0	60	0	60	n	0.15	2	11	2	11	y	0.08	4	47	4	47	n	0.00	0	26	0	26	n	0.17	7	34	7	34	y	0.00	0	57	0	57	n	0.04	2	47	2	47	n	0.16	7	38	7	38	y	ENSMUSG00000031072.15	LTO1	chr7	protein_coding	ABCE maturation factor
novel_NIR_17313	chr7	144471417	144472964	+	144471417	144482662	A3SS	ENSMUST00000128057.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	10	0	10	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	0.67	4	2	4	2	y	-	-	-	-	-	-	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	0.88	7	1	7	1	y	ENSMUSG00000031072.15	LTO1	chr7	protein_coding	ABCE maturation factor
novel_NIR_17314	chr7	144813875	144814687	-	144813875	144814609	A5SS	ENSMUST00000058022.6	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.22	2	7	2	7	y	ENSMUSG00000048677.10	Tpcn2	chr7	protein_coding	two pore segment channel 2
novel_NIR_17315	chr7	15716078	15716178	+	15714863	15716178	A5SS	ENSMUST00000210035.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000109984.2	Gm38948	chr7	lncRNA	predicted gene, 38948
novel_NIR_17316	chr7	15832699	15841480	+	15832699	15842976	A3SS	ENSMUST00000127637.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000006024.14	Napa	chr7	protein_coding	N-ethylmaleimide sensitive fusion protein attachment protein alpha
novel_NIR_17317	chr7	15843092	15847037	+	15843092	15847275	A3SS	ENSMUST00000139507.3	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000006024.14	Napa	chr7	protein_coding	N-ethylmaleimide sensitive fusion protein attachment protein alpha
novel_NIR_17318	chr7	15940106	15946734	-	15940106;15944613	15944439;15946734	ES	ENSMUST00000121123.8	novel	0.10	1	9.0	1	8;10	n	0.20	2	8.0	2	11;5	y	0.00	0	9.0	0	3;15	n	0.25	3	9.0	3	9;9	y	0.38	7	11.5	7	9;14	y	0.07	1	14.0	1	17;11	n	0.00	0	10.0	0	11;9	n	0.00	0	6.5	0	10;3	n	0.43	3	4.0	3	4;4	y	0.00	0	11.5	0	13;10	n	0.10	1	9.5	1	10;9	n	0.24	2	6.5	2	5;8	y	ENSMUSG00000006019.16	Dhx34	chr7	protein_coding	DEAH (Asp-Glu-Ala-His) box polypeptide 34
novel_NIR_17319	chr7	15952875	15954976	-	15952875	15955609	A5SS	ENSMUST00000118795.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000006019.16	Dhx34	chr7	protein_coding	DEAH (Asp-Glu-Ala-His) box polypeptide 34
novel_NIR_17320	chr7	15952875	15954976	-	15952875	15955923	A5SS	ENSMUST00000121123.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.60	3	2	3	2	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	ENSMUSG00000006019.16	Dhx34	chr7	protein_coding	DEAH (Asp-Glu-Ala-His) box polypeptide 34
novel_NIR_17321	chr7	16018471	16019230	-	16018471	16019852	A5SS	ENSMUST00000145519.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.33	1	2	1	2	n	ENSMUSG00000041375.19	Ccdc9	chr7	protein_coding	coiled-coil domain containing 9
novel_NIR_17322	chr7	16018471	16019230	-	16018471;16018618	16018564;16019230	ES	ENSMUST00000174270.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.80	2	0.5	2	1;0	y	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	ENSMUSG00000041375.19	Ccdc9	chr7	protein_coding	coiled-coil domain containing 9
novel_NIR_17323	chr7	16043689	16046051	+	16042433	16046051	A5SS	ENSMUST00000209688.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000002083.14	Bbc3	chr7	protein_coding	BCL2 binding component 3
novel_NIR_17324	chr7	16043689	16046051	+	16043786	16046051	A5SS	ENSMUST00000002152.13	novel	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.22	2	7	2	7	y	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.06	1	15	1	15	n	ENSMUSG00000002083.14	Bbc3	chr7	protein_coding	BCL2 binding component 3
novel_NIR_17325	chr7	16043689	16046051	+	16044463	16046051	5pMXE	ENSMUST00000136781.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.20	1	4	1	4	n	ENSMUSG00000002083.14	Bbc3	chr7	protein_coding	BCL2 binding component 3
novel_NIR_17326	chr7	16047371	16047552	+	16046339	16047552	A5SS	ENSMUST00000002152.13	novel	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.12	1	7	1	7	n	0.00	0	10	0	10	n	0.60	3	2	3	2	y	0.00	0	19	0	19	n	0.00	0	13	0	13	n	0.00	0	17	0	17	n	0.08	1	11	1	11	n	ENSMUSG00000002083.14	Bbc3	chr7	protein_coding	BCL2 binding component 3
novel_NIR_17327	chr7	16047407	16047552	+	16046339	16047552	A5SS	ENSMUST00000002152.13	novel	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	19	0	19	n	0.28	5	13	5	13	y	0.00	0	17	0	17	n	0.00	0	11	0	11	n	ENSMUSG00000002083.14	Bbc3	chr7	protein_coding	BCL2 binding component 3
novel_NIR_17328	chr7	16149865	16150698	+	16134966	16150698	A5SS	ENSMUST00000214735.2	novel	0.00	0	1	0	1	n	0.33	2	4	2	4	y	0.00	0	8	0	8	n	0.50	3	3	3	3	y	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.25	2	6	2	6	y	0.00	0	6	0	6	n	0.10	1	9	1	9	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.21	3	11	3	11	y	ENSMUSG00000059273.10	Zc3h4	chr7	protein_coding	zinc finger CCCH-type containing 4
novel_NIR_17329	chr7	16149865	16150698	+	16135231	16150698	A5SS	ENSMUST00000098789.5	novel	0.00	0	3	0	3	n	0.22	2	7	2	7	y	0.00	0	13	0	13	n	0.38	3	5	3	5	y	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.40	2	3	2	3	y	0.00	0	5	0	5	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.27	3	8	3	8	y	ENSMUSG00000059273.10	Zc3h4	chr7	protein_coding	zinc finger CCCH-type containing 4
novel_NIR_17330	chr7	16149865	16150698	+	16136441	16150698	A5SS	ENSMUST00000209289.2	novel	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	0.50	1	1	1	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000059273.10	Zc3h4	chr7	protein_coding	zinc finger CCCH-type containing 4
novel_NIR_17331	chr7	16477293	16477998	+	16477293	16477516	A3SS&ES	ENSMUST00000205590.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000008036.12	Ap2s1	chr7	protein_coding	adaptor-related protein complex 2, sigma 1 subunit
novel_NIR_17332	chr7	16477293	16479928	+	16477293	16477516	A3SS&ES	ENSMUST00000205590.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	5	0	5	0	n	-	-	-	-	-	-	ENSMUSG00000008036.12	Ap2s1	chr7	protein_coding	adaptor-related protein complex 2, sigma 1 subunit
novel_NIR_17333	chr7	16477293;16479984	16479928;16481186	+	16477293;16477605	16477516;16481186	MXE	ENSMUST00000205590.2	novel	-	-	-	-	-	-	1.00	0.5	0.0	0;1	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1.0	0.0	2;0	0;0	n	1.00	4.0	0.0	5;3	0;0	y	1.00	1.5	0.0	0;3	0;0	n	ENSMUSG00000008036.12	Ap2s1	chr7	protein_coding	adaptor-related protein complex 2, sigma 1 subunit
novel_NIR_17334	chr7	16479984	16481186	+	16472463	16481186	A5SS	ENSMUST00000205607.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	ENSMUSG00000008036.12	Ap2s1	chr7	protein_coding	adaptor-related protein complex 2, sigma 1 subunit
novel_NIR_17335	chr7	16479984	16481186	+	16477605	16481186	A5SS	ENSMUST00000205590.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	n	1.00	3	0	3	0	y	ENSMUSG00000008036.12	Ap2s1	chr7	protein_coding	adaptor-related protein complex 2, sigma 1 subunit
novel_NIR_17336	chr7	16549048	16550625	-	16549048	16549151	5pMXE	ENSMUST00000206259.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000048920.9	Fkrp	chr7	protein_coding	fukutin related protein
novel_NIR_17337	chr7	16549048	16550625	-	16549051	16550625	A3SS	ENSMUST00000061390.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.29	2	5	2	5	y	0.00	0	4	0	4	n	-	-	-	-	-	-	ENSMUSG00000048920.9	Fkrp	chr7	protein_coding	fukutin related protein
novel_NIR_17338	chr7	16565063	16566851	+	16565063	16565271	A3SS&ES	ENSMUST00000185011.8	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	6	0	6	n	1.00	2	0	2	0	y	0.00	0	4	0	4	n	ENSMUSG00000030374.16	Strn4	chr7	protein_coding	striatin, calmodulin binding protein 4
novel_NIR_17339	chr7	16565063	16566851	+	16565063	16565390	3pMXE	ENSMUST00000127835.2	novel	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.22	2	7	2	7	y	0.00	0	11	0	11	n	ENSMUSG00000030374.16	Strn4	chr7	protein_coding	striatin, calmodulin binding protein 4
novel_NIR_17340	chr7	16579877	16581526	+	16579882	16581526	A5SS	ENSMUST00000168093.9	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.33	2	4	2	4	y	0.00	0	9	0	9	n	0.00	0	5	0	5	n	ENSMUSG00000041187.17	Prkd2	chr7	protein_coding	protein kinase D2
novel_NIR_17341	chr7	16756581	16761967	-	16756581	16758512	5pMXE	ENSMUST00000127311.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000003099.12	Ppp5c	chr7	protein_coding	protein phosphatase 5, catalytic subunit
novel_NIR_17342	chr7	16756581	16761967	-	16756581	16761353	5pMXE	ENSMUST00000153242.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000003099.12	Ppp5c	chr7	protein_coding	protein phosphatase 5, catalytic subunit
novel_NIR_17343	chr7	18625309	18625964	-	18625312	18625964	A3SS	ENSMUST00000098780.10	novel	0.15	2	11	2	11	y	0.06	1	16	1	16	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.00	0	21	0	21	n	0.00	0	7	0	7	n	0.05	1	19	1	19	n	0.00	0	12	0	12	n	0.07	1	14	1	14	n	0.00	0	21	0	21	n	0.00	0	17	0	17	n	0.00	0	13	0	13	n	ENSMUSG00000074358.10	Ccdc61	chr7	protein_coding	coiled-coil domain containing 61
novel_NIR_17344	chr7	18644182	18644268	-	18637864	18644268	A3SS	ENSMUST00000150065.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000074358.10	Ccdc61	chr7	protein_coding	coiled-coil domain containing 61
novel_NIR_17345	chr7	18644182	18644279	-	18637864	18644279	A3SS	ENSMUST00000139077.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000074358.10	Ccdc61	chr7	protein_coding	coiled-coil domain containing 61
novel_NIR_17346	chr7	18726545	18734400	+	18726545	18734416	A3SS	ENSMUST00000059331.9	novel	0.33	2	4	2	4	y	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	ENSMUSG00000048481.16	Mypop	chr7	protein_coding	Myb-related transcription factor, partner of profilin
novel_NIR_17347	chr7	18787371	18787476	+	18787371	18788403	A3SS	ENSMUST00000130328.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023118.16	Sympk	chr7	protein_coding	symplekin
novel_NIR_17348	chr7	18822034	18822836	+	18822034;18822189	18822113;18822836	ES	ENSMUST00000108474.2	novel	0.00	0	7.0	0	0;14	n	0.00	0	7.0	0	0;14	n	0.00	0	7.0	0	0;14	n	0.00	0	7.0	0	0;14	n	0.00	0	16.5	0	3;30	n	0.00	0	6.5	0	0;13	n	0.08	2	22.5	2	3;42	n	0.00	0	7.0	0	2;12	n	0.00	0	5.5	0	0;11	n	0.09	1	10.5	1	0;21	n	0.25	3	9.0	3	0;18	y	0.08	1	11.5	1	4;19	n	ENSMUSG00000030409.17	Dmpk	chr7	protein_coding	dystrophia myotonica-protein kinase
novel_NIR_17349	chr7	18822034	18822836	+	18822174	18822836	A5SS	ENSMUST00000154199.8	novel	0.00	0	14	0	14	n	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	22	0	22	n	0.00	0	7	0	7	n	0.08	2	22	2	22	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.33	1	2	1	2	n	0.25	3	9	3	9	y	0.10	1	9	1	9	n	ENSMUSG00000030409.17	Dmpk	chr7	protein_coding	dystrophia myotonica-protein kinase
novel_NIR_17350	chr7	19087460	19093015	-	19091941	19093015	3pMXE	ENSMUST00000047036.10	novel	0.56	5	4	5	4	y	0.47	7	8	7	8	y	0.19	4	17	4	17	y	0.33	9	18	9	18	y	0.43	10	13	10	13	y	0.25	3	9	3	9	y	0.52	13	12	13	12	y	0.17	2	10	2	10	y	0.25	2	6	2	6	y	0.62	18	11	18	11	y	0.42	8	11	8	11	y	0.30	3	7	3	7	y	ENSMUSG00000047649.10	Cd3eap	chr7	protein_coding	CD3E antigen, epsilon polypeptide associated protein
novel_NIR_17351	chr7	19093818	19094729	+	19093723	19094729	A5SS	ENSMUST00000140836.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040734.15	Ppp1r13l	chr7	protein_coding	protein phosphatase 1, regulatory subunit 13 like
novel_NIR_17352	chr7	19177278;19178468	19178405;19179034	-	19177278	19179034	cassetteExon	ENSMUST00000239292.2	novel	0.17	2.5	12	2;3	12	y	0.00	0.0	24	0;0	24	n	0.00	0.0	59	0;0	59	n	0.00	0.0	19	0;0	19	n	0.00	0.0	27	0;0	27	n	0.00	0.0	20	0;0	20	n	0.01	0.5	34	1;0	34	n	0.00	0.0	22	0;0	22	n	0.00	0.0	20	0;0	20	n	0.00	0.0	30	0;0	30	n	0.00	0.0	16	0;0	16	n	0.00	0.0	27	0;0	27	n	ENSMUSG00000030397.12	Mark4	chr7	protein_coding	MAP/microtubule affinity regulating kinase 4
novel_NIR_17353	chr7	19185681	19190882	-	19185681	19190991	A5SS	ENSMUST00000209058.2	novel	0.80	4	1	4	1	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	ENSMUSG00000030397.12	Mark4	chr7	protein_coding	MAP/microtubule affinity regulating kinase 4
novel_NIR_17354	chr7	19185681	19190882	-	19185681	19192369	A5SS	ENSMUST00000239292.2	novel	0.36	4	7	4	7	y	0.00	0	7	0	7	n	0.14	4	24	4	24	n	0.43	6	8	6	8	y	0.00	0	17	0	17	n	0.42	5	7	5	7	y	0.20	3	12	3	12	y	0.20	3	12	3	12	y	0.33	3	6	3	6	y	0.22	4	14	4	14	y	0.08	1	11	1	11	n	0.25	3	9	3	9	y	ENSMUSG00000030397.12	Mark4	chr7	protein_coding	MAP/microtubule affinity regulating kinase 4
novel_NIR_17355	chr7	19197278	19203393	+	19197370	19203393	A5SS	ENSMUST00000137613.9	novel	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	ENSMUSG00000011263.17	Exoc3l2	chr7	protein_coding	exocyst complex component 3-like 2
novel_NIR_17356	chr7	19242757	19243001	+	19242757	19248347	A3SS	ENSMUST00000136873.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	ENSMUSG00000002043.18	Trappc6a	chr7	protein_coding	trafficking protein particle complex 6A
novel_NIR_17357	chr7	19299597	19306964	-	19299601	19306964	A3SS	ENSMUST00000122055.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000044709.7	Gemin7	chr7	protein_coding	gem nuclear organelle associated protein 7
novel_NIR_17358	chr7	19299597	19306964	-	19305506	19306964	A3SS&ES	ENSMUST00000151646.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000044709.7	Gemin7	chr7	protein_coding	gem nuclear organelle associated protein 7
novel_NIR_17359	chr7	19299597	19307234	-	19299601	19307234	A3SS	ENSMUST00000117222.2	novel	0.02	1	53	1	53	n	0.05	3	54	3	54	n	0.05	3	58	3	58	n	0.00	0	60	0	60	n	0.05	4	84	4	84	n	0.09	4	43	4	43	n	0.15	12	66	12	66	y	0.09	5	52	5	52	n	0.07	3	43	3	43	n	0.05	4	75	4	75	n	0.00	0	109	0	109	n	0.04	3	79	3	79	n	ENSMUSG00000044709.7	Gemin7	chr7	protein_coding	gem nuclear organelle associated protein 7
novel_NIR_17360	chr7	19299597	19307234	-	19303807	19307234	A3SS&ES	ENSMUST00000119912.2	novel	0.33	1	2	1	2	n	1.00	3	0	3	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	0.80	4	1	4	1	y	1.00	4	0	4	0	y	1.00	12	0	12	0	y	1.00	5	0	5	0	y	0.75	3	1	3	1	y	0.57	4	3	4	3	y	-	-	-	-	-	-	0.60	3	2	3	2	y	ENSMUSG00000044709.7	Gemin7	chr7	protein_coding	gem nuclear organelle associated protein 7
novel_NIR_17361	chr7	19305506	19307234	-	19303807	19307234	A3SS	ENSMUST00000119912.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.50	2	2	2	2	y	ENSMUSG00000044709.7	Gemin7	chr7	protein_coding	gem nuclear organelle associated protein 7
novel_NIR_17362	chr7	19305506	19307234	-	19305506	19306964	5pMXE	ENSMUST00000151646.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000044709.7	Gemin7	chr7	protein_coding	gem nuclear organelle associated protein 7
novel_NIR_17363	chr7	19319272	19320290	-	19319272	19319516	5pMXE	ENSMUST00000209059.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000061028.8	Clasrp	chr7	protein_coding	CLK4-associating serine/arginine rich protein
novel_NIR_17364	chr7	19407538	19409205	-	19407538	19407760	5pMXE	ENSMUST00000134116.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000002992.18	Apoc2	chr7	protein_coding	apolipoprotein C-II
novel_NIR_17365	chr7	19407538	19409205	-	19407538	19415230	A5SS	ENSMUST00000150569.9	novel	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.20	2	8	2	8	y	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	ENSMUSG00000109350.2	Gm44805	chr7	protein_coding	predicted gene 44805
novel_NIR_17366	chr7	19407538	19409437	-	19407538	19407760	5pMXE	ENSMUST00000134116.8	novel	1.00	9	0	9	0	y	1.00	2	0	2	0	y	1.00	60	0	60	0	y	1.00	1	0	1	0	n	1.00	19	0	19	0	y	1.00	11	0	11	0	y	1.00	18	0	18	0	y	1.00	20	0	20	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	8	0	8	0	y	1.00	8	0	8	0	y	ENSMUSG00000002992.18	Apoc2	chr7	protein_coding	apolipoprotein C-II
novel_NIR_17367	chr7	19407538	19409437	-	19407538	19415230	A5SS	ENSMUST00000150569.9	novel	0.45	9	11	9	11	y	0.13	2	13	2	13	n	0.88	60	8	60	8	y	0.14	1	6	1	6	n	0.76	19	6	19	6	y	0.85	11	2	11	2	y	0.78	18	5	18	5	y	0.91	20	2	20	2	y	0.25	3	9	3	9	y	0.00	0	15	0	15	n	0.44	8	10	8	10	y	0.40	8	12	8	12	y	ENSMUSG00000109350.2	Gm44805	chr7	protein_coding	predicted gene 44805
novel_NIR_17368	chr7	19407538	19411791	-	19407538	19407760	5pMXE	ENSMUST00000134116.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000002992.18	Apoc2	chr7	protein_coding	apolipoprotein C-II
novel_NIR_17369	chr7	19407538	19411791	-	19407538	19415230	A5SS	ENSMUST00000150569.9	novel	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.20	2	8	2	8	y	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	ENSMUSG00000109350.2	Gm44805	chr7	protein_coding	predicted gene 44805
novel_NIR_17370	chr7	19407538	19415234	-	19407538	19407760	5pMXE	ENSMUST00000134116.8	novel	1.00	29	0	29	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	30	0	30	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000002992.18	Apoc2	chr7	protein_coding	apolipoprotein C-II
novel_NIR_17371	chr7	19407538	19415234	-	19407538	19415230	A5SS	ENSMUST00000150569.9	novel	0.72	29	11	29	11	y	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.83	30	6	30	6	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	ENSMUSG00000109350.2	Gm44805	chr7	protein_coding	predicted gene 44805
novel_NIR_17372	chr7	19410809	19411823	-	19410809	19411791	A5SS	ENSMUST00000142352.9	novel	0.00	0	7	0	7	n	0.17	1	5	1	5	n	0.18	4	18	4	18	y	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.38	5	8	5	8	y	0.44	4	5	4	5	y	0.40	4	6	4	6	y	0.17	1	5	1	5	n	0.00	0	11	0	11	n	0.06	1	15	1	15	n	0.00	0	7	0	7	n	ENSMUSG00000002992.18	Apoc2	chr7	protein_coding	apolipoprotein C-II
novel_NIR_17373	chr7	19410809	19411823	-	19410809	19415230	A5SS	ENSMUST00000127648.4	novel	0.00	0	49	0	49	n	0.03	1	39	1	39	n	0.22	4	14	4	14	y	0.00	0	54	0	54	n	0.00	0	41	0	41	n	0.31	5	11	5	11	y	0.09	4	42	4	42	n	0.22	4	14	4	14	y	0.03	1	37	1	37	n	0.00	0	59	0	59	n	0.02	1	65	1	65	n	0.00	0	47	0	47	n	ENSMUSG00000109350.2	Gm44805	chr7	protein_coding	predicted gene 44805
novel_NIR_17374	chr7	19410809	19412031	-	19410809	19411791	5pMXE	ENSMUST00000142352.9	novel	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.14	3	18	3	18	n	0.54	7	6	7	6	y	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.42	11	15	11	15	y	0.00	0	7	0	7	n	ENSMUSG00000002992.18	Apoc2	chr7	protein_coding	apolipoprotein C-II
novel_NIR_17375	chr7	19410809	19412031	-	19410809	19415230	A5SS	ENSMUST00000127648.4	novel	0.00	0	49	0	49	n	0.00	0	39	0	39	n	0.18	3	14	3	14	y	0.11	7	54	7	54	n	0.00	0	41	0	41	n	0.00	0	11	0	11	n	0.00	0	42	0	42	n	0.00	0	14	0	14	n	0.00	0	37	0	37	n	0.00	0	59	0	59	n	0.14	11	65	11	65	n	0.00	0	47	0	47	n	ENSMUSG00000109350.2	Gm44805	chr7	protein_coding	predicted gene 44805
novel_NIR_17376	chr7	19410809	19412033	-	19410809	19411791	5pMXE	ENSMUST00000142352.9	novel	0.77	24	7	24	7	y	0.00	0	5	0	5	n	0.66	35	18	35	18	y	0.87	39	6	39	6	y	0.78	50	14	50	14	y	0.00	0	8	0	8	n	0.90	43	5	43	5	y	0.79	22	6	22	6	y	0.91	48	5	48	5	y	0.76	34	11	34	11	y	0.21	4	15	4	15	y	0.87	46	7	46	7	y	ENSMUSG00000002992.18	Apoc2	chr7	protein_coding	apolipoprotein C-II
novel_NIR_17377	chr7	19410809	19412033	-	19410809	19415230	A5SS	ENSMUST00000127648.4	novel	0.33	24	49	24	49	y	0.00	0	39	0	39	n	0.71	35	14	35	14	y	0.42	39	54	39	54	y	0.55	50	41	50	41	n	0.00	0	11	0	11	n	0.51	43	42	43	42	y	0.61	22	14	22	14	y	0.56	48	37	48	37	y	0.37	34	59	34	59	y	0.06	4	65	4	65	n	0.49	46	47	46	47	y	ENSMUSG00000109350.2	Gm44805	chr7	protein_coding	predicted gene 44805
novel_NIR_17378	chr7	19410809;19412237	19412033;19415230	-	19410809	19415230	cassetteExon	ENSMUST00000127648.4	novel	0.20	12.0	49	24;0	49	n	0.00	0.0	39	0;0	39	n	0.56	17.5	14	35;0	14	n	0.27	19.5	54	39;0	54	n	0.40	27.0	41	50;4	41	y	0.00	0.0	11	0;0	11	n	0.34	21.5	42	43;0	42	n	0.44	11.0	14	22;0	14	n	0.39	24.0	37	48;0	37	n	0.22	17.0	59	34;0	59	n	0.03	2.0	65	4;0	65	n	0.33	23.0	47	46;0	47	n	ENSMUSG00000109350.2	Gm44805	chr7	protein_coding	predicted gene 44805
novel_NIR_17379	chr7	19410837	19411791	-	19410809	19411791	A3SS	ENSMUST00000142352.9	novel	0.00	0	7	0	7	n	0.17	1	5	1	5	n	0.00	0	18	0	18	n	0.25	2	6	2	6	y	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.17	1	5	1	5	n	0.00	0	6	0	6	n	0.29	2	5	2	5	y	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.12	1	7	1	7	n	ENSMUSG00000002992.18	Apoc2	chr7	protein_coding	apolipoprotein C-II
novel_NIR_17380	chr7	19412237	19415230	-	19407538	19415230	A3SS	ENSMUST00000150569.9	novel	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.40	4	6	4	6	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	ENSMUSG00000109350.2	Gm44805	chr7	protein_coding	predicted gene 44805
novel_NIR_17381	chr7	19412652	19415230	-	19407538	19415230	A3SS	ENSMUST00000150569.9	novel	0.96	292	11	292	11	y	0.95	268	13	268	13	y	0.00	0	8	0	8	n	0.98	331	6	331	6	y	0.99	548	6	548	6	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.92	23	2	23	2	y	0.95	165	9	165	9	y	0.00	0	15	0	15	n	0.98	402	10	402	10	y	0.97	410	12	410	12	n	ENSMUSG00000109350.2	Gm44805	chr7	protein_coding	predicted gene 44805
novel_NIR_17382	chr7	19412652	19415230	-	19410809	19415230	A3SS	ENSMUST00000127648.4	novel	0.86	292	49	292	49	y	0.87	268	39	268	39	y	0.00	0	14	0	14	n	0.86	331	54	331	54	y	0.93	548	41	548	41	y	0.00	0	11	0	11	n	0.00	0	42	0	42	n	0.62	23	14	23	14	y	0.82	165	37	165	37	y	0.00	0	59	0	59	n	0.86	402	65	402	65	y	0.90	410	47	410	47	n	ENSMUSG00000109350.2	Gm44805	chr7	protein_coding	predicted gene 44805
novel_NIR_17383	chr7	19412743	19415230	-	19407538	19415230	A3SS	ENSMUST00000150569.9	novel	0.56	14	11	14	11	y	0.46	11	13	11	13	y	0.00	0	8	0	8	n	0.50	6	6	6	6	y	0.68	13	6	13	6	y	0.80	8	2	8	2	y	0.79	19	5	19	5	y	0.82	9	2	9	2	y	0.53	10	9	10	9	y	0.40	10	15	10	15	y	0.64	18	10	18	10	y	0.56	15	12	15	12	n	ENSMUSG00000109350.2	Gm44805	chr7	protein_coding	predicted gene 44805
novel_NIR_17384	chr7	19412743	19415230	-	19410809	19415230	A3SS	ENSMUST00000127648.4	novel	0.22	14	49	14	49	y	0.22	11	39	11	39	y	0.00	0	14	0	14	n	0.10	6	54	6	54	n	0.24	13	41	13	41	y	0.42	8	11	8	11	y	0.31	19	42	19	42	y	0.39	9	14	9	14	y	0.21	10	37	10	37	y	0.14	10	59	10	59	n	0.22	18	65	18	65	y	0.24	15	47	15	47	n	ENSMUSG00000109350.2	Gm44805	chr7	protein_coding	predicted gene 44805
novel_NIR_17385	chr7	19425954	19426336	-	19423561	19426336	A3SS	ENSMUST00000207978.2	novel	0.61	128	83	128	83	y	0.67	222	107	222	107	y	0.00	0	28	0	28	n	0.72	192	73	192	73	y	0.42	49	67	49	67	y	0.82	103	23	103	23	y	0.76	256	82	256	82	y	0.00	0	35	0	35	n	0.73	200	75	200	75	y	0.72	316	124	316	124	y	0.68	247	115	247	115	y	0.70	224	94	224	94	y	ENSMUSG00000040564.15	Apoc1	chr7	protein_coding	apolipoprotein C-I
novel_NIR_17386	chr7	19430624	19430649	-	19430262	19430649	A3SS	ENSMUST00000167646.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	632	637	632	637	y	0.00	0	803	0	803	n	-	-	-	-	-	-	ENSMUSG00000002985.17	Apoe	chr7	protein_coding	apolipoprotein E
novel_NIR_17387	chr7	19431477	19455297	+	19449198	19455297	5pMXE	ENSMUST00000172483.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000092381.2	Gm20512	chr7	lncRNA	predicted gene 20512
novel_NIR_17388	chr7	19431563	19432113	-	19431539	19432113	A3SS	ENSMUST00000172808.2	novel	0.11	548	4354	548	4354	n	0.02	101	4461	101	4461	n	0.12	364	2645	364	2645	n	0.07	381	5321	381	5321	n	0.06	304	5043	304	5043	n	-	-	-	-	-	-	0.04	209	4625	209	4625	n	0.04	88	1877	88	1877	n	0.19	1209	5280	1209	5280	y	0.20	1823	7436	1823	7436	y	0.00	0	5804	0	5804	n	0.13	936	6134	936	6134	n	ENSMUSG00000002985.17	Apoe	chr7	protein_coding	apolipoprotein E
novel_NIR_17389	chr7	19432143	19432936	-	19432197	19432936	A3SS	ENSMUST00000003066.16	novel	0.00	0	4	0	4	n	0.79	38	10	38	10	y	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.00	0	17	0	17	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	ENSMUSG00000002985.17	Apoe	chr7	protein_coding	apolipoprotein E
novel_NIR_17390	chr7	19432143	19432936	-	19432398	19432936	A3SS&ES	ENSMUST00000172983.8	novel	0.00	0	51	0	51	n	0.48	38	41	38	41	y	0.00	0	24	0	24	n	0.00	0	50	0	50	n	0.00	0	54	0	54	n	0.00	0	13	0	13	n	0.00	0	42	0	42	n	0.00	0	14	0	14	n	0.00	0	60	0	60	n	0.00	0	79	0	79	n	0.00	0	55	0	55	n	0.00	0	50	0	50	n	ENSMUSG00000002985.17	Apoe	chr7	protein_coding	apolipoprotein E
novel_NIR_17391	chr7	19432178	19432257	-	19432178	19432449	A5SS	ENSMUST00000174144.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	13	0	13	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	ENSMUSG00000002985.17	Apoe	chr7	protein_coding	apolipoprotein E
novel_NIR_17392	chr7	19432178	19432257	-	19432178	19432897	A5SS	ENSMUST00000174355.8	novel	0.00	0	26	0	26	n	0.00	0	28	0	28	n	0.00	0	21	0	21	n	0.00	0	27	0	27	n	0.19	5	22	5	22	y	0.00	0	2	0	2	n	0.00	0	38	0	38	n	0.00	0	11	0	11	n	0.00	0	31	0	31	n	0.22	13	47	13	47	y	0.00	0	22	0	22	n	0.17	7	35	7	35	y	ENSMUSG00000002985.17	Apoe	chr7	protein_coding	apolipoprotein E
novel_NIR_17393	chr7	19432178	19432258	-	19432178	19432449	A5SS	ENSMUST00000174144.8	novel	-	-	-	-	-	-	1.00	8	0	8	0	y	1.00	9	0	9	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	8	0	8	0	y	-	-	-	-	-	-	1.00	8	0	8	0	y	1.00	14	0	14	0	y	-	-	-	-	-	-	1.00	14	0	14	0	y	ENSMUSG00000002985.17	Apoe	chr7	protein_coding	apolipoprotein E
novel_NIR_17394	chr7	19432178	19432258	-	19432178	19432897	A5SS	ENSMUST00000174355.8	novel	0.00	0	26	0	26	n	0.22	8	28	8	28	y	0.30	9	21	9	21	y	0.00	0	27	0	27	n	0.00	0	22	0	22	n	0.67	4	2	4	2	y	0.17	8	38	8	38	y	0.00	0	11	0	11	n	0.21	8	31	8	31	y	0.23	14	47	14	47	y	0.00	0	22	0	22	n	0.29	14	35	14	35	y	ENSMUSG00000002985.17	Apoe	chr7	protein_coding	apolipoprotein E
novel_NIR_17395	chr7	19432178	19432785	-	19432178	19432329	A5SS&ES	ENSMUST00000172983.8	novel	0.21	54	207	54	207	y	0.16	35	189	35	189	y	0.17	21	104	21	104	y	0.15	44	242	44	242	y	0.21	69	255	69	255	y	0.16	12	63	12	63	y	0.15	44	242	44	242	y	0.23	23	76	23	76	y	0.21	64	247	64	247	y	0.18	83	388	83	388	y	0.17	54	268	54	268	y	0.18	64	294	64	294	y	ENSMUSG00000002985.17	Apoe	chr7	protein_coding	apolipoprotein E
novel_NIR_17396	chr7	19432178	19432785	-	19432178	19432449	5pMXE	ENSMUST00000174144.8	novel	1.00	54	0	54	0	y	1.00	35	0	35	0	y	1.00	21	0	21	0	y	1.00	44	0	44	0	y	1.00	69	0	69	0	y	1.00	12	0	12	0	y	1.00	44	0	44	0	y	1.00	23	0	23	0	y	1.00	64	0	64	0	y	1.00	83	0	83	0	y	1.00	54	0	54	0	y	1.00	64	0	64	0	y	ENSMUSG00000002985.17	Apoe	chr7	protein_coding	apolipoprotein E
novel_NIR_17397	chr7	19432178	19432785	-	19432178	19432897	A5SS	ENSMUST00000174355.8	novel	0.68	54	26	54	26	y	0.56	35	28	35	28	y	0.50	21	21	21	21	y	0.62	44	27	44	27	y	0.76	69	22	69	22	y	0.86	12	2	12	2	y	0.54	44	38	44	38	y	0.68	23	11	23	11	y	0.67	64	31	64	31	y	0.64	83	47	83	47	y	0.71	54	22	54	22	y	0.65	64	35	64	35	y	ENSMUSG00000002985.17	Apoe	chr7	protein_coding	apolipoprotein E
novel_NIR_17398	chr7	19432178	19432940	-	19432178	19432449	5pMXE	ENSMUST00000174144.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	11	0	11	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000002985.17	Apoe	chr7	protein_coding	apolipoprotein E
novel_NIR_17399	chr7	19432178	19432940	-	19432178	19432897	5pMXE	ENSMUST00000174355.8	novel	0.00	0	26	0	26	n	0.00	0	28	0	28	n	0.05	1	21	1	21	n	0.00	0	27	0	27	n	0.00	0	22	0	22	n	0.00	0	2	0	2	n	0.22	11	38	11	38	y	0.00	0	11	0	11	n	0.18	7	31	7	31	y	0.00	0	47	0	47	n	0.12	3	22	3	22	n	0.00	0	35	0	35	n	ENSMUSG00000002985.17	Apoe	chr7	protein_coding	apolipoprotein E
novel_NIR_17400	chr7	19432178	19433179	-	19432178	19432449	5pMXE	ENSMUST00000174144.8	novel	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	ENSMUSG00000002985.17	Apoe	chr7	protein_coding	apolipoprotein E
novel_NIR_17401	chr7	19432178	19433179	-	19432178	19432897	5pMXE	ENSMUST00000174355.8	novel	0.16	5	26	5	26	y	0.07	2	28	2	28	n	0.05	1	21	1	21	n	0.04	1	27	1	27	n	0.08	2	22	2	22	n	0.00	0	2	0	2	n	0.00	0	38	0	38	n	0.00	0	11	0	11	n	0.03	1	31	1	31	n	0.04	2	47	2	47	n	0.12	3	22	3	22	n	0.10	4	35	4	35	n	ENSMUSG00000002985.17	Apoe	chr7	protein_coding	apolipoprotein E
novel_NIR_17402	chr7	19432178	19434234	-	19432178	19432449	5pMXE	ENSMUST00000174144.8	novel	1.00	23	0	23	0	y	1.00	23	0	23	0	y	1.00	16	0	16	0	y	1.00	39	0	39	0	y	1.00	30	0	30	0	y	1.00	8	0	8	0	y	1.00	25	0	25	0	y	1.00	10	0	10	0	y	1.00	36	0	36	0	y	1.00	51	0	51	0	y	1.00	52	0	52	0	y	1.00	40	0	40	0	y	ENSMUSG00000002985.17	Apoe	chr7	protein_coding	apolipoprotein E
novel_NIR_17403	chr7	19432178	19434234	-	19432178	19432897	5pMXE	ENSMUST00000174355.8	novel	0.47	23	26	23	26	y	0.45	23	28	23	28	y	0.43	16	21	16	21	y	0.59	39	27	39	27	y	0.58	30	22	30	22	y	0.80	8	2	8	2	y	0.40	25	38	25	38	y	0.48	10	11	10	11	y	0.54	36	31	36	31	y	0.52	51	47	51	47	y	0.70	52	22	52	22	y	0.53	40	35	40	35	y	ENSMUSG00000002985.17	Apoe	chr7	protein_coding	apolipoprotein E
novel_NIR_17404	chr7	19432473	19432936	-	19432197	19432936	A3SS	ENSMUST00000003066.16	novel	0.81	17	4	17	4	y	0.70	23	10	23	10	y	0.26	5	14	5	14	y	0.82	32	7	32	7	y	0.54	15	13	15	13	y	0.00	0	3	0	3	n	0.74	28	10	28	10	y	1.00	8	0	8	0	y	0.55	21	17	21	17	y	0.70	33	14	33	14	y	0.67	18	9	18	9	y	0.68	26	12	26	12	y	ENSMUSG00000002985.17	Apoe	chr7	protein_coding	apolipoprotein E
novel_NIR_17405	chr7	19432473	19432936	-	19432398	19432936	A3SS	ENSMUST00000172983.8	novel	0.25	17	51	17	51	y	0.36	23	41	23	41	y	0.17	5	24	5	24	y	0.39	32	50	32	50	y	0.22	15	54	15	54	y	0.00	0	13	0	13	n	0.40	28	42	28	42	y	0.36	8	14	8	14	y	0.26	21	60	21	60	y	0.29	33	79	33	79	y	0.25	18	55	18	55	y	0.34	26	50	26	50	y	ENSMUSG00000002985.17	Apoe	chr7	protein_coding	apolipoprotein E
novel_NIR_17406	chr7	19432476	19432936	-	19432197	19432936	A3SS	ENSMUST00000003066.16	novel	0.00	0	4	0	4	n	0.33	5	10	5	10	y	0.12	2	14	2	14	n	0.61	11	7	11	7	y	0.35	7	13	7	13	y	0.00	0	3	0	3	n	0.17	2	10	2	10	y	1.00	1	0	1	0	n	0.29	7	17	7	17	y	0.36	8	14	8	14	y	0.25	3	9	3	9	y	0.48	11	12	11	12	y	ENSMUSG00000002985.17	Apoe	chr7	protein_coding	apolipoprotein E
novel_NIR_17407	chr7	19432476	19432936	-	19432398	19432936	A3SS	ENSMUST00000172983.8	novel	0.00	0	51	0	51	n	0.11	5	41	5	41	n	0.08	2	24	2	24	n	0.18	11	50	11	50	y	0.11	7	54	7	54	n	0.00	0	13	0	13	n	0.05	2	42	2	42	n	0.07	1	14	1	14	n	0.10	7	60	7	60	n	0.09	8	79	8	79	n	0.05	3	55	3	55	n	0.18	11	50	11	50	y	ENSMUSG00000002985.17	Apoe	chr7	protein_coding	apolipoprotein E
novel_NIR_17408	chr7	19530091	19530358	-	19526880	19530358	A3SS	ENSMUST00000108449.9	novel	0.16	8	43	8	43	y	0.08	4	46	4	46	n	0.23	16	54	16	54	y	0.09	6	64	6	64	n	0.05	3	59	3	59	n	0.24	17	53	17	53	y	0.20	14	56	14	56	y	0.08	4	44	4	44	n	0.09	4	40	4	40	n	0.09	9	86	9	86	n	0.09	6	62	6	62	n	0.04	2	50	2	50	n	ENSMUSG00000040525.14	Cblc	chr7	protein_coding	Casitas B-lineage lymphoma c
novel_NIR_17409	chr7	19542973	19543067	-	19542855	19543067	A3SS	ENSMUST00000135609.8	novel	0.22	2	7	2	7	y	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.00	0	26	0	26	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.00	0	17	0	17	n	0.00	0	15	0	15	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	ENSMUSG00000053175.18	Bcl3	chr7	protein_coding	B cell leukemia/lymphoma 3
novel_NIR_17410	chr7	19546438	19556362	-	19546438	19549890	5pMXE	ENSMUST00000141996.2	novel	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000053175.18	Bcl3	chr7	protein_coding	B cell leukemia/lymphoma 3
novel_NIR_17411	chr7	19554125	19555942	-	19554125	19556000	A5SS	ENSMUST00000139680.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000053175.18	Bcl3	chr7	protein_coding	B cell leukemia/lymphoma 3
novel_NIR_17412	chr7	19590545	19591744	-	19590277	19591744	A3SS	ENSMUST00000014830.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000014686.9	Ceacam16	chr7	protein_coding	carcinoembryonic antigen-related cell adhesion molecule 16
novel_NIR_17413	chr7	23781663;23784554	23784510;23784851	+	23781663	23784851	cassetteExon	ENSMUST00000207002.2	novel	0.00	0.0	7	0;0	7	n	0.00	0.0	11	0;0	11	n	0.16	3.0	16	2;4	16	y	0.00	0.0	17	0;0	17	n	0.00	0.0	22	0;0	22	n	0.00	0.0	9	0;0	9	n	0.00	0.0	24	0;0	24	n	0.00	0.0	9	0;0	9	n	0.00	0.0	8	0;0	8	n	0.00	0.0	17	0;0	17	n	0.00	0.0	8	0;0	8	n	0.00	0.0	16	0;0	16	n	ENSMUSG00000057101.9	Zfp180	chr7	protein_coding	zinc finger protein 180
novel_NIR_17414	chr7	23834740	23835408	+	23834740	23835411	A3SS	ENSMUST00000205736.2	novel	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.71	5	2	5	2	y	0.60	3	2	3	2	y	0.80	4	1	4	1	y	ENSMUSG00000047603.10	Zfp235	chr7	protein_coding	zinc finger protein 235
novel_NIR_17415	chr7	23834740	23835408	+	23834740	23835634	A3SS	ENSMUST00000206809.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.00	0	6	0	6	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.71	5	2	5	2	y	0.50	3	3	3	3	y	0.31	4	9	4	9	n	ENSMUSG00000047603.10	Zfp235	chr7	protein_coding	zinc finger protein 235
novel_NIR_17416	chr7	23834740	23835408	+	23834740	23836471	A3SS	ENSMUST00000205680.2	novel	0.07	1	13	1	13	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.09	1	10	1	10	n	0.00	0	18	0	18	n	0.50	1	1	1	1	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.33	2	4	2	4	y	0.56	5	4	5	4	y	0.38	3	5	3	5	y	1.00	4	0	4	0	y	ENSMUSG00000047603.10	Zfp235	chr7	protein_coding	zinc finger protein 235
novel_NIR_17417	chr7	23834740	23836246	+	23834740	23835411	A3SS	ENSMUST00000205736.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000047603.10	Zfp235	chr7	protein_coding	zinc finger protein 235
novel_NIR_17418	chr7	23834740	23836246	+	23834740	23835634	A3SS	ENSMUST00000206809.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.00	0	9	0	9	n	ENSMUSG00000047603.10	Zfp235	chr7	protein_coding	zinc finger protein 235
novel_NIR_17419	chr7	23834740	23836246	+	23834740	23836471	A3SS	ENSMUST00000205680.2	novel	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	18	0	18	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.33	2	4	2	4	y	0.00	0	5	0	5	n	-	-	-	-	-	-	ENSMUSG00000047603.10	Zfp235	chr7	protein_coding	zinc finger protein 235
novel_NIR_17420	chr7	23836597	23837567	+	23836597	23837718	A3SS	ENSMUST00000205680.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.75	3	1	3	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000047603.10	Zfp235	chr7	protein_coding	zinc finger protein 235
novel_NIR_17421	chr7	23836597	23837567	+	23836597	23839725	A3SS	ENSMUST00000056549.9	novel	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.40	2	3	2	3	y	0.00	0	5	0	5	n	0.75	3	1	3	1	y	0.20	1	4	1	4	n	0.00	0	7	0	7	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.50	4	4	4	4	y	ENSMUSG00000047603.10	Zfp235	chr7	protein_coding	zinc finger protein 235
novel_NIR_17422	chr7	23936100	23936794	-	23936100	23936508	A5SS	ENSMUST00000206362.2	novel	0.29	2	5	2	5	y	0.25	1	3	1	3	n	1.00	1	0	1	0	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.25	1	3	1	3	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000074283.6	Zfp109	chr7	protein_coding	zinc finger protein 109
novel_NIR_17423	chr7	24105026	24105119	+	24105026	24105113	A3SS	ENSMUST00000146381.8	novel	0.18	3	14	3	14	y	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	ENSMUSG00000002210.12	Smg9	chr7	protein_coding	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)
novel_NIR_17424	chr7	24105026	24105122	+	24105026	24105113	A3SS	ENSMUST00000146381.8	novel	0.12	2	14	2	14	n	0.00	0	10	0	10	n	0.17	3	15	3	15	y	0.17	2	10	2	10	y	0.06	1	15	1	15	n	0.17	2	10	2	10	y	0.00	0	15	0	15	n	0.06	1	16	1	16	n	0.00	0	11	0	11	n	0.09	1	10	1	10	n	0.21	3	11	3	11	y	0.00	0	11	0	11	n	ENSMUSG00000002210.12	Smg9	chr7	protein_coding	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)
novel_NIR_17425	chr7	24207301	24209971	+	24206861	24209971	A5SS	ENSMUST00000071361.13	novel	0.25	1	3	1	3	n	1.00	1	0	1	0	n	0.00	0	11	0	11	n	0.33	1	2	1	2	n	1.00	7	0	7	0	y	0.00	0	3	0	3	n	0.60	6	4	6	4	y	-	-	-	-	-	-	0.25	1	3	1	3	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000064264.15	Zfp428	chr7	protein_coding	zinc finger protein 428
novel_NIR_17426	chr7	24208402	24209971	+	24206861	24209971	A5SS	ENSMUST00000071361.13	novel	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.00	0	11	0	11	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000064264.15	Zfp428	chr7	protein_coding	zinc finger protein 428
novel_NIR_17427	chr7	24230581	24230809	+	24230329	24230809	A5SS	ENSMUST00000049020.9	novel	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	37	0	37	n	0.00	0	14	0	14	n	0.00	0	27	0	27	n	0.16	3	16	3	16	y	0.00	0	13	0	13	n	0.00	0	20	0	20	n	0.00	0	3	0	3	n	0.00	0	14	0	14	n	0.06	1	16	1	16	n	0.00	0	13	0	13	n	ENSMUSG00000041037.9	Irgq	chr7	protein_coding	immunity-related GTPase family, Q
novel_NIR_17428	chr7	24251691	24259161	+	24247307	24259161	A5SS	ENSMUST00000205573.2	novel	0.00	0	19	0	19	n	0.00	0	13	0	13	n	0.00	0	25	0	25	n	0.18	3	14	3	14	y	0.06	2	32	2	32	n	0.00	0	16	0	16	n	0.00	0	27	0	27	n	0.00	0	22	0	22	n	0.00	0	17	0	17	n	0.00	0	32	0	32	n	0.00	0	21	0	21	n	0.00	0	28	0	28	n	ENSMUSG00000051768.10	Xrcc1	chr7	protein_coding	X-ray repair complementing defective repair in Chinese hamster cells 1
novel_NIR_17429	chr7	24265718	24265792	+	24265718	24265814	A3SS	ENSMUST00000205573.2	novel	0.00	0	29	0	29	n	0.00	0	15	0	15	n	0.05	1	21	1	21	n	0.00	0	20	0	20	n	0.00	0	31	0	31	n	0.10	2	19	2	19	n	0.04	1	23	1	23	n	0.00	0	11	0	11	n	0.24	5	16	5	16	y	0.10	3	27	3	27	n	0.09	1	10	1	10	n	0.00	0	21	0	21	n	ENSMUSG00000051768.10	Xrcc1	chr7	protein_coding	X-ray repair complementing defective repair in Chinese hamster cells 1
novel_NIR_17430	chr7	24310312	24310561	+	24310277	24310561	A5SS	ENSMUST00000206422.2	novel	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.71	5	2	5	2	y	0.50	3	3	3	3	y	1.00	1	0	1	0	n	0.60	3	2	3	2	y	0.50	1	1	1	1	n	0.50	2	2	2	2	y	0.90	9	1	9	1	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000074277.5	Phldb3	chr7	protein_coding	pleckstrin homology like domain, family B, member 3
novel_NIR_17431	chr7	24312438	24316260	+	24312438	24316257	A3SS	ENSMUST00000206422.2	novel	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.16	3	16	3	16	y	0.00	0	24	0	24	n	0.00	0	10	0	10	n	0.06	1	16	1	16	n	0.00	0	4	0	4	n	0.00	0	18	0	18	n	0.00	0	20	0	20	n	0.00	0	14	0	14	n	0.00	0	19	0	19	n	ENSMUSG00000074277.5	Phldb3	chr7	protein_coding	pleckstrin homology like domain, family B, member 3
novel_NIR_17432	chr7	24603280	24607141	+	24602553	24607141	A5SS	ENSMUST00000117796.8	novel	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.00	0	38	0	38	n	0.00	0	15	0	15	n	0.05	1	18	1	18	n	0.14	3	18	3	18	n	0.05	1	19	1	19	n	0.15	2	11	2	11	y	0.00	0	10	0	10	n	0.05	1	20	1	20	n	0.00	0	8	0	8	n	0.05	1	21	1	21	n	ENSMUSG00000040940.19	Arhgef1	chr7	protein_coding	Rho guanine nucleotide exchange factor (GEF) 1
novel_NIR_17433	chr7	24603280	24607141	+	24602788	24607141	A5SS	ENSMUST00000206028.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000040940.19	Arhgef1	chr7	protein_coding	Rho guanine nucleotide exchange factor (GEF) 1
novel_NIR_17434	chr7	24603280	24607141	+	24603922	24607141	5pMXE	ENSMUST00000206906.2	novel	0.00	0	8	0	8	n	0.00	0	17	0	17	n	0.00	0	18	0	18	n	0.00	0	16	0	16	n	0.06	1	17	1	17	n	0.20	3	12	3	12	y	0.04	1	24	1	24	n	0.29	2	5	2	5	y	0.00	0	7	0	7	n	0.06	1	16	1	16	n	0.00	0	11	0	11	n	0.04	1	26	1	26	n	ENSMUSG00000040940.19	Arhgef1	chr7	protein_coding	Rho guanine nucleotide exchange factor (GEF) 1
novel_NIR_17435	chr7	24671283	24671529	-	24671283	24671428	5pMXE	ENSMUST00000206868.2	novel	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	9	0	9	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000003380.12	Rabac1	chr7	protein_coding	Rab acceptor 1 (prenylated)
novel_NIR_17436	chr7	24671283	24671595	-	24671283	24671428	5pMXE	ENSMUST00000206868.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000003380.12	Rabac1	chr7	protein_coding	Rab acceptor 1 (prenylated)
novel_NIR_17437	chr7	24722824	24745599	-	24722821	24745599	A3SS	ENSMUST00000205328.2	novel	0.05	1	20	1	20	n	0.00	0	18	0	18	n	0.00	0	17	0	17	n	0.24	5	16	5	16	y	0.04	2	54	2	54	n	0.14	2	12	2	12	n	0.04	1	23	1	23	n	0.05	1	21	1	21	n	0.00	0	10	0	10	n	0.00	0	23	0	23	n	0.17	4	20	4	20	y	0.06	1	17	1	17	n	ENSMUSG00000003378.10	Grik5	chr7	protein_coding	glutamate receptor, ionotropic, kainate 5 (gamma 2)
novel_NIR_17438	chr7	24758019	24758366	-	24758023	24758366	A3SS	ENSMUST00000205328.2	novel	0.20	3	12	3	12	y	0.25	3	9	3	9	y	0.25	3	9	3	9	y	0.00	0	8	0	8	n	0.17	3	15	3	15	y	0.00	0	10	0	10	n	0.21	4	15	4	15	y	0.08	1	11	1	11	n	0.00	0	9	0	9	n	0.32	6	13	6	13	y	0.00	0	11	0	11	n	0.00	0	15	0	15	n	ENSMUSG00000003378.10	Grik5	chr7	protein_coding	glutamate receptor, ionotropic, kainate 5 (gamma 2)
novel_NIR_17439	chr7	24760208	24762308	-	24760208	24760521	A5SS&ES	ENSMUST00000206134.2	novel	1.00	4	0	4	0	y	1.00	12	0	12	0	y	1.00	11	0	11	0	y	-	-	-	-	-	-	1.00	14	0	14	0	y	1.00	6	0	6	0	y	1.00	10	0	10	0	y	1.00	9	0	9	0	y	1.00	6	0	6	0	y	1.00	12	0	12	0	y	1.00	8	0	8	0	y	1.00	4	0	4	0	y	ENSMUSG00000003378.10	Grik5	chr7	protein_coding	glutamate receptor, ionotropic, kainate 5 (gamma 2)
novel_NIR_17440	chr7	24760208	24762308	-	24760208	24762303	A5SS	ENSMUST00000205328.2	novel	0.24	4	13	4	13	y	0.50	12	12	12	12	y	0.50	11	11	11	11	y	0.00	0	11	0	11	n	0.34	14	27	14	27	y	0.60	6	4	6	4	y	0.26	10	29	10	29	y	0.45	9	11	9	11	y	0.55	6	5	6	5	y	0.55	12	10	12	10	y	0.40	8	12	8	12	y	0.31	4	9	4	9	y	ENSMUSG00000003378.10	Grik5	chr7	protein_coding	glutamate receptor, ionotropic, kainate 5 (gamma 2)
novel_NIR_17441	chr7	24918456	24919189	-	24918456	24919212	A5SS	ENSMUST00000206750.2	novel	0.25	2	6	2	6	y	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.33	2	4	2	4	y	0.40	4	6	4	6	y	0.25	1	3	1	3	n	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.14	1	6	1	6	n	0.00	0	3	0	3	n	0.62	5	3	5	3	y	0.50	6	6	6	6	y	ENSMUSG00000054499.10	Dedd2	chr7	protein_coding	death effector domain-containing DNA binding protein 2
novel_NIR_17442	chr7	24918456	24919189	-	24918592	24919189	A3SS	ENSMUST00000058702.7	novel	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.25	2	6	2	6	y	0.50	4	4	4	4	y	0.33	1	2	1	2	n	0.09	1	10	1	10	n	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.50	5	5	5	5	y	0.50	6	6	6	6	y	ENSMUSG00000054499.10	Dedd2	chr7	protein_coding	death effector domain-containing DNA binding protein 2
novel_NIR_17443	chr7	24918592	24918874	-	24918592	24919189	A5SS	ENSMUST00000058702.7	novel	0.60	3	2	3	2	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.14	1	6	1	6	n	ENSMUSG00000054499.10	Dedd2	chr7	protein_coding	death effector domain-containing DNA binding protein 2
novel_NIR_17444	chr7	24918592	24919212	-	24918456	24919212	A3SS	ENSMUST00000206750.2	novel	0.60	9	6	9	6	y	0.88	15	2	15	2	y	0.61	11	7	11	7	y	0.84	21	4	21	4	y	0.82	28	6	28	6	y	0.70	7	3	7	3	y	0.90	27	3	27	3	y	0.72	13	5	13	5	y	0.85	34	6	34	6	y	0.92	33	3	33	3	y	0.86	19	3	19	3	y	0.80	24	6	24	6	y	ENSMUSG00000054499.10	Dedd2	chr7	protein_coding	death effector domain-containing DNA binding protein 2
novel_NIR_17445	chr7	24918592	24919212	-	24918592	24919189	A5SS	ENSMUST00000058702.7	novel	0.82	9	2	9	2	y	1.00	15	0	15	0	y	0.92	11	1	11	1	y	0.78	21	6	21	6	y	0.88	28	4	28	4	y	0.78	7	2	7	2	y	0.73	27	10	27	10	y	0.72	13	5	13	5	y	0.92	34	3	34	3	y	0.89	33	4	33	4	y	0.79	19	5	19	5	y	0.80	24	6	24	6	y	ENSMUSG00000054499.10	Dedd2	chr7	protein_coding	death effector domain-containing DNA binding protein 2
novel_NIR_17446	chr7	24920929	24923726	+	24920929;24923632	24923540;24923726	ES	ENSMUST00000055604.6	novel	0.18	1	4.5	1	4;5	n	0.00	0	5.5	0	4;7	n	0.00	0	6.5	0	3;10	n	0.11	1	8.5	1	5;12	n	0.25	2	6.0	2	5;7	y	0.00	0	2.5	0	2;3	n	0.00	0	5.0	0	3;7	n	0.00	0	7.5	0	4;11	n	0.00	0	12.0	0	11;13	n	0.20	2	8.0	2	6;10	y	0.00	0	3.0	0	1;5	n	0.00	0	11.5	0	6;17	n	ENSMUSG00000046541.10	Zfp526	chr7	protein_coding	zinc finger protein 526
novel_NIR_17447	chr7	24990767	24990851	+	24990767	24993399	A3SS	ENSMUST00000164820.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000005442.14	Cic	chr7	protein_coding	capicua transcriptional repressor
novel_NIR_17448	chr7	25025968	25026977	+	25025968	25026895	A3SS	ENSMUST00000128119.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.22	2	7	2	7	y	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000045039.10	Megf8	chr7	protein_coding	multiple EGF-like-domains 8
novel_NIR_17449	chr7	25044654	25045525	+	25043223	25045525	A5SS	ENSMUST00000128119.2	novel	0.09	1	10	1	10	n	0.25	2	6	2	6	y	0.06	1	15	1	15	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.00	0	15	0	15	n	ENSMUSG00000045039.10	Megf8	chr7	protein_coding	multiple EGF-like-domains 8
novel_NIR_17450	chr7	25164305	25171223	-	25164305;25164945	25164893;25171223	ES	ENSMUST00000206676.2	novel	0.00	0	11.0	0	22;0	n	0.00	0	11.5	0	21;2	n	0.11	3	24.0	3	48;0	n	0.00	0	16.5	0	32;1	n	0.04	1	23.5	1	46;1	n	0.00	0	19.0	0	36;2	n	0.05	1	20.5	1	41;0	n	0.05	1	17.5	1	33;2	n	0.00	0	11.5	0	22;1	n	0.16	3	16.0	3	32;0	y	0.00	0	17.0	0	33;1	n	0.00	0	24.0	0	48;0	n	ENSMUSG00000074272.11	Ceacam1	chr7	protein_coding	carcinoembryonic antigen-related cell adhesion molecule 1
novel_NIR_17451	chr7	25169857	25171223	-	25164945	25171223	A3SS	ENSMUST00000206676.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000074272.11	Ceacam1	chr7	protein_coding	carcinoembryonic antigen-related cell adhesion molecule 1
novel_NIR_17452	chr7	25320517	25321398	+	25320517;25320937	25320849;25321398	ES	ENSMUST00000147472.2	novel	0.20	3	12.0	3	15;9	y	0.00	0	7.5	0	7;8	n	0.15	1	5.5	1	3;8	n	0.00	0	10.0	0	14;6	n	0.12	1	7.0	1	8;6	n	0.00	0	5.0	0	3;7	n	0.17	1	5.0	1	5;5	n	0.40	3	4.5	3	8;1	y	0.11	1	8.0	1	8;8	n	0.20	2	8.0	2	7;9	y	0.35	3	5.5	3	8;3	y	0.12	2	14.0	2	15;13	n	ENSMUSG00000057229.12	Dmac2	chr7	protein_coding	distal membrane arm assembly complex 2
novel_NIR_17453	chr7	25320517;25321472	25321398;25321769	+	25320517;25320937	25320849;25321769	MXE	ENSMUST00000126925.8	novel	0.49	9.0	9.5	3;15	15;4	y	0.45	4.5	5.5	0;9	7;4	n	0.33	2.0	4.0	1;3	3;5	n	0.30	4.0	9.5	0;8	14;5	n	0.43	5.0	6.5	1;9	8;5	n	0.57	2.0	1.5	0;4	3;0	n	0.64	7.0	4.0	1;13	5;3	n	0.53	4.5	4.0	3;6	8;0	y	0.59	8.0	5.5	1;15	8;3	n	0.68	11.5	5.5	2;21	7;4	y	0.63	8.5	5.0	3;14	8;2	y	0.55	10.5	8.5	2;19	15;2	y	ENSMUSG00000057229.12	Dmac2	chr7	protein_coding	distal membrane arm assembly complex 2
novel_NIR_17454	chr7	25321472	25321769	+	25320937	25321769	A5SS	ENSMUST00000126925.8	novel	0.79	15	4	15	4	n	0.69	9	4	9	4	y	0.38	3	5	3	5	n	0.62	8	5	8	5	y	0.64	9	5	9	5	n	1.00	4	0	4	0	y	0.81	13	3	13	3	n	1.00	6	0	6	0	n	0.83	15	3	15	3	n	0.84	21	4	21	4	n	0.88	14	2	14	2	n	0.90	19	2	19	2	n	ENSMUSG00000057229.12	Dmac2	chr7	protein_coding	distal membrane arm assembly complex 2
novel_NIR_17455	chr7	25355845	25362562	+	25359044	25362562	5pMXE	ENSMUST00000205743.2	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000061286.8	Exosc5	chr7	protein_coding	exosome component 5
novel_NIR_17456	chr7	25360818	25362562	+	25359044	25362562	A5SS	ENSMUST00000205743.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	2	2	2	2	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000061286.8	Exosc5	chr7	protein_coding	exosome component 5
novel_NIR_17457	chr7	25362675	25363606	+	25362675	25363673	A3SS	ENSMUST00000205966.2	novel	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.20	1	4	1	4	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.29	2	5	2	5	y	0.00	0	3	0	3	n	ENSMUSG00000061286.8	Exosc5	chr7	protein_coding	exosome component 5
novel_NIR_17458	chr7	25450415	25453760	-	25450415	25453872	A5SS	ENSMUST00000043765.14	novel	0.00	0	17	0	17	n	0.00	0	6	0	6	n	0.11	2	16	2	16	n	0.00	0	15	0	15	n	0.15	2	11	2	11	y	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.07	1	13	1	13	n	0.00	0	7	0	7	n	0.12	1	7	1	7	n	ENSMUSG00000040725.14	Hnrnpul1	chr7	protein_coding	heterogeneous nuclear ribonucleoprotein U-like 1
novel_NIR_17459	chr7	26534968	26535072	+	26534968	26536100	A3SS	ENSMUST00000168869.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	ENSMUSG00000005547.15	Cyp2a5	chr7	protein_coding	cytochrome P450, family 2, subfamily a, polypeptide 5
novel_NIR_17460	chr7	26824428	26826358	+	26824428	26824624	3pMXE	ENSMUST00000133841.2	novel	0.00	0	13	0	13	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.29	2	5	2	5	y	0.06	1	15	1	15	n	0.00	0	9	0	9	n	0.00	0	16	0	16	n	ENSMUSG00000052974.9	Cyp2f2	chr7	protein_coding	cytochrome P450, family 2, subfamily f, polypeptide 2
novel_NIR_17461	chr7	26824428	26827706	+	26824428	26824624	3pMXE	ENSMUST00000133841.2	novel	0.00	0	13	0	13	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.21	3	11	3	11	y	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.14	1	6	1	6	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.00	0	16	0	16	n	ENSMUSG00000052974.9	Cyp2f2	chr7	protein_coding	cytochrome P450, family 2, subfamily f, polypeptide 2
novel_NIR_17462	chr7	26828776	26829240	+	26828776	26829719	A3SS	ENSMUST00000206552.2	novel	0.65	11	6	11	6	y	0.22	2	7	2	7	y	-	-	-	-	-	-	0.45	10	12	10	12	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.67	2	1	2	1	y	0.37	7	12	7	12	y	0.48	14	15	14	15	n	0.59	10	7	10	7	y	0.53	9	8	9	8	y	ENSMUSG00000052974.9	Cyp2f2	chr7	protein_coding	cytochrome P450, family 2, subfamily f, polypeptide 2
novel_NIR_17463	chr7	26865153	26865445	-	26865153	26865449	A5SS	ENSMUST00000134906.2	novel	0.75	6	2	6	2	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.40	4	6	4	6	y	1.00	2	0	2	0	y	0.25	1	3	1	3	n	0.33	1	2	1	2	n	0.25	1	3	1	3	n	0.33	3	6	3	6	y	0.50	4	4	4	4	y	0.00	0	7	0	7	n	0.44	4	5	4	5	y	ENSMUSG00000058709.12	Egln2	chr7	protein_coding	egl-9 family hypoxia-inducible factor 2
novel_NIR_17464	chr7	26865153	26865445	-	26865153	26865741	A5SS	ENSMUST00000108382.2	novel	0.46	6	7	6	7	y	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.22	4	14	4	14	y	0.11	2	16	2	16	n	0.08	1	11	1	11	n	0.06	1	17	1	17	n	0.08	1	11	1	11	n	0.43	3	4	3	4	y	0.18	4	18	4	18	y	0.00	0	9	0	9	n	0.17	4	19	4	19	y	ENSMUSG00000058709.12	Egln2	chr7	protein_coding	egl-9 family hypoxia-inducible factor 2
novel_NIR_17465	chr7	26875318	26878152	-	26875318;26876817	26876686;26878152	ES	ENSMUST00000128409.2	novel	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	1.00	3	0.0	3	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	ENSMUSG00000053291.16	Rab4b	chr7	protein_coding	RAB4B, member RAS oncogene family
novel_NIR_17466	chr7	26902122	26903333	+	26902122	26903181	A3SS	ENSMUST00000179391.8	novel	0.19	3	13	3	13	y	0.09	2	21	2	21	n	0.03	1	38	1	38	n	0.05	1	19	1	19	n	0.08	3	33	3	33	n	0.00	0	29	0	29	n	0.08	3	35	3	35	n	0.13	4	27	4	27	n	0.00	0	12	0	12	n	0.00	0	24	0	24	n	0.00	0	26	0	26	n	0.00	0	17	0	17	n	ENSMUSG00000078786.10	BC024978	chr7	protein_coding	cDNA sequence BC024978
novel_NIR_17467	chr7	26902122	26903333	+	26902122	26903336	A3SS	ENSMUST00000155931.2	novel	0.60	3	2	3	2	y	0.20	2	8	2	8	y	0.09	1	10	1	10	n	0.25	1	3	1	3	n	0.18	3	14	3	14	y	0.00	0	1	0	1	n	0.60	3	2	3	2	y	0.57	4	3	4	3	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	ENSMUSG00000078786.10	BC024978	chr7	protein_coding	cDNA sequence BC024978
novel_NIR_17468	chr7	26903434	26903804	+	26903436	26903804	A5SS	ENSMUST00000108379.8	novel	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.33	2	4	2	4	y	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.11	1	8	1	8	n	ENSMUSG00000078786.10	BC024978	chr7	protein_coding	cDNA sequence BC024978
novel_NIR_17469	chr7	26903436	26905337	+	26903436	26903804	A3SS	ENSMUST00000108379.8	novel	0.29	2	5	2	5	y	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.09	1	10	1	10	n	0.15	2	11	2	11	y	0.25	2	6	2	6	y	0.17	1	5	1	5	n	0.33	2	4	2	4	y	0.00	0	6	0	6	n	0.11	1	8	1	8	n	0.00	0	8	0	8	n	ENSMUSG00000078786.10	BC024978	chr7	protein_coding	cDNA sequence BC024978
novel_NIR_17470	chr7	26932993	26933127	+	26932997	26933127	A5SS	ENSMUST00000003860.13	novel	0.00	0	18	0	18	n	0.00	0	23	0	23	n	0.06	13	191	13	191	n	0.07	2	27	2	27	n	0.08	4	45	4	45	n	0.01	1	84	1	84	n	0.06	3	51	3	51	n	0.05	2	38	2	38	n	0.15	4	23	4	23	y	0.00	0	40	0	40	n	0.05	1	19	1	19	n	0.00	0	48	0	48	n	ENSMUSG00000003762.14	Coq8b	chr7	protein_coding	coenzyme Q8B
novel_NIR_17471	chr7	27026248	27026668	-	27026248	27026686	A5SS	ENSMUST00000038618.13	novel	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.00	0	17	0	17	n	0.38	3	5	3	5	y	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	24	0	24	n	ENSMUSG00000040488.19	Ltbp4	chr7	protein_coding	latent transforming growth factor beta binding protein 4
novel_NIR_17472	chr7	27046597	27047959	-	27046597;27047873	27047757;27047959	ES	ENSMUST00000003857.7	novel	0.15	3	17.5	3	16;19	y	0.00	0	11.0	0	7;15	n	0.00	0	20.0	0	17;23	n	0.00	0	20.0	0	19;21	n	0.00	0	20.0	0	25;15	n	0.00	0	13.5	0	12;15	n	0.00	0	15.5	0	23;8	n	0.00	0	10.0	0	6;14	n	0.00	0	11.0	0	11;11	n	0.05	1	20.0	1	18;22	n	0.08	1	11.0	1	13;9	n	0.00	0	14.5	0	16;13	n	ENSMUSG00000089832.9	Shkbp1	chr7	protein_coding	Sh3kbp1 binding protein 1
novel_NIR_17473	chr7	27147570	27158681	+	27151975	27158681	5pMXE	ENSMUST00000108357.8	novel	0.00	0	90	0	90	n	0.00	0	112	0	112	n	0.00	0	315	0	315	n	0.00	0	112	0	112	n	0.00	0	184	0	184	n	0.00	0	171	0	171	n	0.00	0	226	0	226	n	0.00	0	167	0	167	n	0.00	0	95	0	95	n	0.09	15	156	15	156	n	0.00	0	101	0	101	n	0.17	14	66	14	66	y	ENSMUSG00000040466.17	Blvrb	chr7	protein_coding	biliverdin reductase B (flavin reductase (NADPH))
novel_NIR_17474	chr7	27158845	27161992	+	27159058	27161992	A5SS	ENSMUST00000108358.8	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.30	3	7	3	7	y	0.00	0	13	0	13	n	0.00	0	2	0	2	n	0.08	1	11	1	11	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	ENSMUSG00000040466.17	Blvrb	chr7	protein_coding	biliverdin reductase B (flavin reductase (NADPH))
novel_NIR_17475	chr7	27205539	27207425	-	27205539	27207499	A5SS	ENSMUST00000147449.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000087371.2	Gm15541	chr7	lncRNA	predicted gene 15541
novel_NIR_17476	chr7	27244687	27248435	-	27242329	27248435	A3SS	ENSMUST00000117611.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000003363.16	Pld3	chr7	protein_coding	phospholipase D family, member 3
novel_NIR_17477	chr7	27291304	27306668	+	27305362	27306668	5pMXE	ENSMUST00000108343.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000004056.16	Akt2	chr7	protein_coding	thymoma viral proto-oncogene 2
novel_NIR_17478	chr7	27306830	27307393	+	27306830	27308048	A3SS	ENSMUST00000108343.8	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	ENSMUSG00000004056.16	Akt2	chr7	protein_coding	thymoma viral proto-oncogene 2
novel_NIR_17479	chr7	27308141	27315666	+	27315580	27315666	A5SS&ES	ENSMUST00000147263.2	novel	-	-	-	-	-	-	0.50	1	1	1	1	n	0.89	8	1	8	1	y	1.00	5	0	5	0	y	0.86	6	1	6	1	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	2	0	2	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.80	4	1	4	1	y	ENSMUSG00000004056.16	Akt2	chr7	protein_coding	thymoma viral proto-oncogene 2
novel_NIR_17480	chr7	27308178	27310872	+	27308178	27315172	A3SS	ENSMUST00000147263.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000004056.16	Akt2	chr7	protein_coding	thymoma viral proto-oncogene 2
novel_NIR_17481	chr7	27308178	27310872	+	27308178	27317633	A3SS	ENSMUST00000143499.8	novel	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000004056.16	Akt2	chr7	protein_coding	thymoma viral proto-oncogene 2
novel_NIR_17482	chr7	27308178	27315463	+	27308178	27315172	A3SS	ENSMUST00000147263.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000004056.16	Akt2	chr7	protein_coding	thymoma viral proto-oncogene 2
novel_NIR_17483	chr7	27308178	27315463	+	27308178	27317633	A3SS	ENSMUST00000143499.8	novel	-	-	-	-	-	-	0.00	0	6	0	6	n	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000004056.16	Akt2	chr7	protein_coding	thymoma viral proto-oncogene 2
novel_NIR_17484	chr7	27357886	27358255	-	27357957	27358255	A3SS	ENSMUST00000036453.14	novel	0.00	0	17	0	17	n	0.00	0	15	0	15	n	0.06	1	17	1	17	n	0.00	0	8	0	8	n	0.09	1	10	1	10	n	0.27	3	8	3	8	y	0.00	0	19	0	19	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	ENSMUSG00000040390.14	Map3k10	chr7	protein_coding	mitogen-activated protein kinase kinase kinase 10
novel_NIR_17485	chr7	27362474	27362650	-	27361076	27362650	A3SS	ENSMUST00000036453.14	novel	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.14	1	6	1	6	n	0.00	0	10	0	10	n	0.17	1	5	1	5	n	0.00	0	15	0	15	n	0.20	1	4	1	4	n	0.67	2	1	2	1	y	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	ENSMUSG00000040390.14	Map3k10	chr7	protein_coding	mitogen-activated protein kinase kinase kinase 10
novel_NIR_17486	chr7	27363998	27364351	-	27363998	27364375	A5SS	ENSMUST00000036453.14	novel	0.00	0	8	0	8	n	0.21	3	11	3	11	y	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.00	0	21	0	21	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	ENSMUSG00000040390.14	Map3k10	chr7	protein_coding	mitogen-activated protein kinase kinase kinase 10
novel_NIR_17487	chr7	27363998	27364351	-	27363998	27367774	A5SS	ENSMUST00000133551.2	novel	0.00	0	7	0	7	n	0.33	3	6	3	6	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	ENSMUSG00000040390.14	Map3k10	chr7	protein_coding	mitogen-activated protein kinase kinase kinase 10
novel_NIR_17488	chr7	27367954	27371333	-	27367954	27373646	A5SS	ENSMUST00000133551.2	novel	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040390.14	Map3k10	chr7	protein_coding	mitogen-activated protein kinase kinase kinase 10
novel_NIR_17489	chr7	27390547	27390640	+	27388911	27390640	A5SS	ENSMUST00000120004.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000057093.15	Zfp607b	chr7	protein_coding	zinc finger protein 607B
novel_NIR_17490	chr7	27507752	27507841	+	27507752	27510176	A3SS	ENSMUST00000205671.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.33	3	6	3	6	y	0.00	0	1	0	1	n	0.20	1	4	1	4	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	-	-	-	-	-	-	ENSMUSG00000030604.10	Zfp626	chr7	protein_coding	zinc finger protein 626
novel_NIR_17491	chr7	27673228	27674178	-	27673270	27674178	A3SS	ENSMUST00000205874.2	novel	0.21	3	11	3	11	y	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	ENSMUSG00000063047.10	Zfp780b	chr7	protein_coding	zinc finger protein 780B
novel_NIR_17492	chr7	27748395	27748529	-	27748311	27748529	A3SS	ENSMUST00000140053.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030603.17	Psmc4	chr7	protein_coding	proteasome (prosome, macropain) 26S subunit, ATPase, 4
novel_NIR_17493	chr7	27748401	27748529	-	27748311	27748529	A3SS	ENSMUST00000140053.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030603.17	Psmc4	chr7	protein_coding	proteasome (prosome, macropain) 26S subunit, ATPase, 4
novel_NIR_17494	chr7	28016723	28016818	-	28016538	28016818	A3SS	ENSMUST00000209105.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000003435.10	Supt5	chr7	protein_coding	suppressor of Ty 5, DSIF elongation factor subunit
novel_NIR_17495	chr7	28030954	28033834	-	28030954	28037352	A5SS	ENSMUST00000207563.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.50	2	2	2	2	y	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000003435.10	Supt5	chr7	protein_coding	suppressor of Ty 5, DSIF elongation factor subunit
novel_NIR_17496	chr7	28030954	28037424	-	28030954	28037352	A5SS	ENSMUST00000207563.2	novel	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.38	3	5	3	5	y	0.33	1	2	1	2	n	0.12	1	7	1	7	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	ENSMUSG00000003435.10	Supt5	chr7	protein_coding	suppressor of Ty 5, DSIF elongation factor subunit
novel_NIR_17497	chr7	28069576	28069663	-	28069586	28069663	A3SS	ENSMUST00000094644.11	novel	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.18	2	9	2	9	y	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	ENSMUSG00000037552.18	Plekhg2	chr7	protein_coding	pleckstrin homology domain containing, family G (with RhoGef domain) member 2
novel_NIR_17498	chr7	28076111	28091594	+	28078529	28091594	5pMXE	ENSMUST00000208885.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.75	3	1	3	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000109455.2	Gm44710	chr7	lncRNA	predicted gene 44710
novel_NIR_17499	chr7	28432546	28432854	+	28432297	28432854	A5SS	ENSMUST00000032818.13	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000030598.16	Fbxo17	chr7	protein_coding	F-box protein 17
novel_NIR_17500	chr7	28432725	28432854	+	28432297	28432854	A5SS	ENSMUST00000032818.13	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000030598.16	Fbxo17	chr7	protein_coding	F-box protein 17
novel_NIR_17501	chr7	28435628	28437087	+	28435628	28436764	A3SS	ENSMUST00000032818.13	novel	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.33	1	2	1	2	n	0.20	1	4	1	4	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.25	2	6	2	6	y	ENSMUSG00000030598.16	Fbxo17	chr7	protein_coding	F-box protein 17
novel_NIR_17502	chr7	28435628	28437087	+	28435628	28437090	A3SS	ENSMUST00000108279.9	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	1.00	2	0	2	0	y	ENSMUSG00000030598.16	Fbxo17	chr7	protein_coding	F-box protein 17
novel_NIR_17503	chr7	28436971	28437087	+	28436971	28437090	A3SS	ENSMUST00000108278.9	novel	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.40	2	3	2	3	y	0.00	0	3	0	3	n	ENSMUSG00000030598.16	Fbxo17	chr7	protein_coding	F-box protein 17
novel_NIR_17504	chr7	28508974	28510097	+	28508284	28510097	A5SS	ENSMUST00000174548.8	novel	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.33	2	4	2	4	y	1.00	1	0	1	0	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	ENSMUSG00000015165.17	Hnrnpl	chr7	protein_coding	heterogeneous nuclear ribonucleoprotein L
novel_NIR_17505	chr7	28508974	28510097	+	28508974	28512704	A3SS	ENSMUST00000172884.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000015165.17	Hnrnpl	chr7	protein_coding	heterogeneous nuclear ribonucleoprotein L
novel_NIR_17506	chr7	28524837	28529225	+	28525548	28529225	5pMXE	ENSMUST00000124017.2	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	2	0	2	n	1.00	5	0	5	0	y	0.50	1	1	1	1	n	0.33	1	2	1	2	n	0.67	2	1	2	1	y	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000053898.13	Ech1	chr7	protein_coding	enoyl coenzyme A hydratase 1, peroxisomal
novel_NIR_17507	chr7	28618493	28624585	-	28618493	28618581	5pMXE	ENSMUST00000140622.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000054808.16	Actn4	chr7	protein_coding	actinin alpha 4
novel_NIR_17508	chr7	28618493	28624585	-	28618493	28649057	A5SS	ENSMUST00000148196.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000054808.16	Actn4	chr7	protein_coding	actinin alpha 4
novel_NIR_17509	chr7	28754484	28756349	-	28754484;28755673	28755659;28756349	ES	ENSMUST00000214374.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.73	51	19.0	51	20;18	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030592.19	Ryr1	chr7	protein_coding	ryanodine receptor 1, skeletal muscle
novel_NIR_17510	chr7	28849260	28849333	+	28849260	28849347	A3SS	ENSMUST00000161522.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030589.16	Rasgrp4	chr7	protein_coding	RAS guanyl releasing protein 4
novel_NIR_17511	chr7	28849260	28849333	+	28849260	28849369	A3SS	ENSMUST00000159351.3	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030589.16	Rasgrp4	chr7	protein_coding	RAS guanyl releasing protein 4
novel_NIR_17512	chr7	28901860	28924465	-	28901860	28910172	5pMXE	ENSMUST00000165907.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000049676.15	Catsperg1	chr7	protein_coding	cation channel sperm associated auxiliary subunit gamma 1
novel_NIR_17513	chr7	28937990	28943495	+	28937870	28943495	A5SS	ENSMUST00000032809.10	novel	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.22	2	7	2	7	y	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.09	1	10	1	10	n	0.00	0	12	0	12	n	0.00	0	17	0	17	n	ENSMUSG00000030588.13	Yif1b	chr7	protein_coding	Yip1 interacting factor homolog B (S. cerevisiae)
novel_NIR_17514	chr7	28937990	28943495	+	28937988	28943495	A5SS	ENSMUST00000138128.3	novel	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.14	1	6	1	6	n	0.00	0	12	0	12	n	0.00	0	11	0	11	n	ENSMUSG00000030588.13	Yif1b	chr7	protein_coding	Yip1 interacting factor homolog B (S. cerevisiae)
novel_NIR_17515	chr7	28937990	28943495	+	28938018	28943495	A5SS	ENSMUST00000142519.3	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000030588.13	Yif1b	chr7	protein_coding	Yip1 interacting factor homolog B (S. cerevisiae)
novel_NIR_17516	chr7	29100574	29103730	-	29100574	29134174	A5SS	ENSMUST00000183096.8	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.33	2	4	2	4	y	-	-	-	-	-	-	0.20	1	4	1	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000030583.17	Sipa1l3	chr7	protein_coding	signal-induced proliferation-associated 1 like 3
novel_NIR_17517	chr7	29524374	29525117	+	29524378	29525117	A5SS	ENSMUST00000178162.3	novel	0.16	3	16	3	16	y	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	21	0	21	n	0.00	0	5	0	5	n	0.00	0	20	0	20	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	13	0	13	n	ENSMUSG00000011427.17	Zfp790	chr7	protein_coding	zinc finger protein 790
novel_NIR_17518	chr7	29598272	29599663	-	29598303	29599663	A3SS	ENSMUST00000162592.8	novel	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.20	2	8	2	8	y	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	ENSMUSG00000062040.15	Zfp27	chr7	protein_coding	zinc finger protein 27
novel_NIR_17519	chr7	29599763	29603330	-	29599763	29603325	A5SS	ENSMUST00000162592.8	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.27	3	8	3	8	y	0.08	1	11	1	11	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	ENSMUSG00000062040.15	Zfp27	chr7	protein_coding	zinc finger protein 27
novel_NIR_17520	chr7	29608056	29609608	+	29608076	29609608	A5SS	ENSMUST00000187028.7	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.50	3	3	3	3	y	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.57	4	3	4	3	y	ENSMUSG00000099689.7	Zfp383	chr7	protein_coding	zinc finger protein 383
novel_NIR_17521	chr7	29631899	29637025	-	29631899;29635468	29635364;29637025	ES	ENSMUST00000108212.8	novel	0.00	0	6.0	0	2;10	n	0.36	2	3.5	2	2;5	y	0.00	0	3.0	0	0;6	n	0.29	2	5.0	2	2;8	y	0.00	0	3.5	0	2;5	n	0.50	2	2.0	2	1;3	y	0.22	1	3.5	1	0;7	n	0.00	0	2.5	0	0;5	n	0.00	0	3.5	0	0;7	n	0.26	3	8.5	3	0;17	y	0.00	0	3.5	0	2;5	n	0.00	0	4.0	0	1;7	n	ENSMUSG00000059975.16	Zfp74	chr7	protein_coding	zinc finger protein 74
novel_NIR_17522	chr7	29631899	29637025	-	29635468	29637025	3pMXE	ENSMUST00000108205.9	novel	0.00	0	10	0	10	n	0.29	2	5	2	5	y	0.00	0	6	0	6	n	0.20	2	8	2	8	y	0.00	0	5	0	5	n	0.40	2	3	2	3	y	0.12	1	7	1	7	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.15	3	17	3	17	y	0.00	0	5	0	5	n	0.00	0	7	0	7	n	ENSMUSG00000059975.16	Zfp74	chr7	protein_coding	zinc finger protein 74
novel_NIR_17523	chr7	29635515	29637025	-	29635468	29637025	A3SS	ENSMUST00000108212.8	novel	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.11	1	8	1	8	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.22	2	7	2	7	y	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	17	0	17	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	ENSMUSG00000059975.16	Zfp74	chr7	protein_coding	zinc finger protein 74
novel_NIR_17524	chr7	29651315	29653280	-	29637493	29653280	A3SS	ENSMUST00000149793.2	novel	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	5	0	5	0	y	ENSMUSG00000059975.16	Zfp74	chr7	protein_coding	zinc finger protein 74
novel_NIR_17525	chr7	29651315	29653280	-	29642970	29653280	A3SS	ENSMUST00000108211.8	novel	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	5	0	5	0	y	ENSMUSG00000059975.16	Zfp74	chr7	protein_coding	zinc finger protein 74
novel_NIR_17526	chr7	29697635	29707939	+	29697635	29713265	A3SS	ENSMUST00000148442.8	novel	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.29	2	5	2	5	y	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	ENSMUSG00000074221.13	Zfp568	chr7	protein_coding	zinc finger protein 568
novel_NIR_17527	chr7	29697635	29707939	+	29697635	29713268	A3SS	ENSMUST00000146074.8	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000074221.13	Zfp568	chr7	protein_coding	zinc finger protein 568
novel_NIR_17528	chr7	29745264	29749642	-	29745264	29750770	A5SS	ENSMUST00000207873.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000053985.11	Zfp14	chr7	protein_coding	zinc finger protein 14
novel_NIR_17529	chr7	29745264	29749865	-	29744233	29749865	A3SS	ENSMUST00000207072.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000053985.11	Zfp14	chr7	protein_coding	zinc finger protein 14
novel_NIR_17530	chr7	29745264	29749865	-	29745264	29750770	A5SS	ENSMUST00000207873.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000053985.11	Zfp14	chr7	protein_coding	zinc finger protein 14
novel_NIR_17531	chr7	29825266	29829481	+	29825266	29830098	A3SS	ENSMUST00000153792.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000074220.11	Zfp382	chr7	protein_coding	zinc finger protein 382
novel_NIR_17532	chr7	29825266	29829481	+	29825266	29830126	A3SS	ENSMUST00000098596.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000074220.11	Zfp382	chr7	protein_coding	zinc finger protein 382
novel_NIR_17533	chr7	29862648	29869084	-	29862653	29869084	A3SS	ENSMUST00000062181.9	novel	0.00	0	15	0	15	n	0.10	1	9	1	9	n	0.09	1	10	1	10	n	0.23	5	17	5	17	y	0.19	4	17	4	17	y	0.00	0	3	0	3	n	0.22	2	7	2	7	y	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.10	1	9	1	9	n	0.00	0	7	0	7	n	0.16	3	16	3	16	y	ENSMUSG00000037029.9	Zfp146	chr7	protein_coding	zinc finger protein 146
novel_NIR_17534	chr7	29862648	29869084	-	29862798	29869084	A3SS&ES	ENSMUST00000136508.3	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	3	0	3	0	y	ENSMUSG00000037029.9	Zfp146	chr7	protein_coding	zinc finger protein 146
novel_NIR_17535	chr7	29862653	29869091	-	29862653	29862752	A5SS&ES	ENSMUST00000136508.3	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	4	0	4	0	y	0.60	3	2	3	2	y	-	-	-	-	-	-	ENSMUSG00000037029.9	Zfp146	chr7	protein_coding	zinc finger protein 146
novel_NIR_17536	chr7	29862653	29869091	-	29862653	29869084	A5SS	ENSMUST00000062181.9	novel	0.06	1	15	1	15	n	0.00	0	9	0	9	n	0.38	6	10	6	10	y	0.00	0	17	0	17	n	0.06	1	17	1	17	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.33	1	2	1	2	n	0.12	1	7	1	7	n	0.31	4	9	4	9	y	0.30	3	7	3	7	y	0.00	0	16	0	16	n	ENSMUSG00000037029.9	Zfp146	chr7	protein_coding	zinc finger protein 146
novel_NIR_17537	chr7	29878006	29884510	+	29883764	29884510	5pMXE	ENSMUST00000208441.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.22	2	7	2	7	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000074218.4	Cox7a1	chr7	protein_coding	cytochrome c oxidase subunit 7A1
novel_NIR_17538	chr7	29931807	29931907	+	29931803	29931907	A5SS	ENSMUST00000149654.8	novel	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.50	2	2	2	2	y	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000019738.16	Polr2i	chr7	protein_coding	polymerase (RNA) II (DNA directed) polypeptide I
novel_NIR_17539	chr7	29943331	29943898	-	29943385	29943898	A3SS	ENSMUST00000145027.8	novel	0.00	0	1	0	1	n	0.20	2	8	2	8	y	0.00	0	1	0	1	n	0.25	2	6	2	6	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037020.17	Wdr62	chr7	protein_coding	WD repeat domain 62
novel_NIR_17540	chr7	29943963	29944115	-	29943963	29944712	A5SS	ENSMUST00000145027.8	novel	1.00	2	0	2	0	y	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.60	3	2	3	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000037020.17	Wdr62	chr7	protein_coding	WD repeat domain 62
novel_NIR_17541	chr7	29949333	29950103	-	29949337	29950103	A3SS	ENSMUST00000134570.8	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	ENSMUSG00000037020.17	Wdr62	chr7	protein_coding	WD repeat domain 62
novel_NIR_17542	chr7	29980124	29981484	+	29980124	29988958	A3SS	ENSMUST00000108187.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000013928.14	1700020L13Rik	chr7	protein_coding	RIKEN cDNA 1700020L13 gene
novel_NIR_17543	chr7	30012132	30012332	+	30012132	30012898	A3SS	ENSMUST00000135882.2	novel	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	3	0	3	0	y	0.25	1	3	1	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000042831.14	Alkbh6	chr7	protein_coding	alkB homolog 6
novel_NIR_17544	chr7	30018108	30018249	+	30018108	30018378	A3SS	ENSMUST00000176232.8	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000019737.15	Syne4	chr7	protein_coding	spectrin repeat containing, nuclear envelope family member 4
novel_NIR_17545	chr7	30018108	30018249	+	30018156	30018249	A5SS	ENSMUST00000054594.15	novel	0.00	0	14	0	14	n	0.00	0	25	0	25	n	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.00	0	24	0	24	n	0.00	0	8	0	8	n	0.00	0	16	0	16	n	0.00	0	18	0	18	n	0.00	0	9	0	9	n	0.15	2	11	2	11	y	0.00	0	10	0	10	n	0.00	0	10	0	10	n	ENSMUSG00000019737.15	Syne4	chr7	protein_coding	spectrin repeat containing, nuclear envelope family member 4
novel_NIR_17546	chr7	30193553	30193641	+	30193553	30193720	A3SS	ENSMUST00000130839.8	novel	0.00	0	22	0	22	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.00	0	19	0	19	n	0.00	0	24	0	24	n	0.00	0	1	0	1	n	0.00	0	12	0	12	n	-	-	-	-	-	-	0.00	0	17	0	17	n	0.00	0	36	0	36	n	0.22	5	18	5	18	y	0.00	0	20	0	20	n	ENSMUSG00000036892.13	Prodh2	chr7	protein_coding	proline dehydrogenase (oxidase) 2
novel_NIR_17547	chr7	30193553	30193641	+	30193553	30193724	A3SS	ENSMUST00000131040.2	novel	0.00	0	22	0	22	n	0.00	0	21	0	21	n	-	-	-	-	-	-	0.00	0	14	0	14	n	0.00	0	12	0	12	n	-	-	-	-	-	-	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	20	0	20	n	0.31	5	11	5	11	y	0.00	0	11	0	11	n	ENSMUSG00000036892.13	Prodh2	chr7	protein_coding	proline dehydrogenase (oxidase) 2
novel_NIR_17548	chr7	30193553	30193664	+	30193553	30193720	A3SS	ENSMUST00000130839.8	novel	0.15	4	22	4	22	y	0.59	17	12	17	12	y	0.33	1	2	1	2	n	0.46	16	19	16	19	y	0.53	27	24	27	24	y	0.67	2	1	2	1	y	0.69	27	12	27	12	y	1.00	1	0	1	0	n	0.59	24	17	24	17	y	0.48	33	36	33	36	y	0.51	19	18	19	18	y	0.61	31	20	31	20	y	ENSMUSG00000036892.13	Prodh2	chr7	protein_coding	proline dehydrogenase (oxidase) 2
novel_NIR_17549	chr7	30193553	30193664	+	30193553	30193724	A3SS	ENSMUST00000131040.2	novel	0.15	4	22	4	22	y	0.45	17	21	17	21	y	1.00	1	0	1	0	n	0.53	16	14	16	14	y	0.69	27	12	27	12	y	1.00	2	0	2	0	y	0.71	27	11	27	11	y	0.17	1	5	1	5	n	0.71	24	10	24	10	y	0.62	33	20	33	20	y	0.63	19	11	19	11	y	0.74	31	11	31	11	y	ENSMUSG00000036892.13	Prodh2	chr7	protein_coding	proline dehydrogenase (oxidase) 2
novel_NIR_17550	chr7	30193553	30193696	+	30193553	30193720	A3SS	ENSMUST00000130839.8	novel	0.00	0	22	0	22	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.00	0	19	0	19	n	0.08	2	24	2	24	n	0.00	0	1	0	1	n	0.00	0	12	0	12	n	-	-	-	-	-	-	0.00	0	17	0	17	n	0.00	0	36	0	36	n	0.18	4	18	4	18	y	0.05	1	20	1	20	n	ENSMUSG00000036892.13	Prodh2	chr7	protein_coding	proline dehydrogenase (oxidase) 2
novel_NIR_17551	chr7	30193553	30193696	+	30193553	30193724	A3SS	ENSMUST00000131040.2	novel	0.00	0	22	0	22	n	0.00	0	21	0	21	n	-	-	-	-	-	-	0.00	0	14	0	14	n	0.14	2	12	2	12	n	-	-	-	-	-	-	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	20	0	20	n	0.27	4	11	4	11	y	0.08	1	11	1	11	n	ENSMUSG00000036892.13	Prodh2	chr7	protein_coding	proline dehydrogenase (oxidase) 2
novel_NIR_17552	chr7	30193553	30205459	+	30193553	30193724	A3SS&ES	ENSMUST00000131040.2	novel	0.00	0	22	0	22	n	0.00	0	21	0	21	n	-	-	-	-	-	-	0.00	0	14	0	14	n	0.00	0	12	0	12	n	-	-	-	-	-	-	0.00	0	11	0	11	n	0.17	1	5	1	5	n	0.00	0	10	0	10	n	0.35	11	20	11	20	n	0.08	1	11	1	11	n	0.21	3	11	3	11	y	ENSMUSG00000036892.13	Prodh2	chr7	protein_coding	proline dehydrogenase (oxidase) 2
novel_NIR_17553	chr7	30206202	30209198	+	30206202	30207821	3pMXE	ENSMUST00000142514.8	novel	0.10	10	95	10	95	n	0.17	22	105	22	105	y	0.00	0	5	0	5	n	0.00	0	69	0	69	n	0.15	16	93	16	93	y	0.00	0	7	0	7	n	0.14	18	113	18	113	n	0.00	0	29	0	29	n	0.19	15	64	15	64	y	0.14	18	112	18	112	n	0.22	25	91	25	91	y	0.22	28	101	28	101	y	ENSMUSG00000036892.13	Prodh2	chr7	protein_coding	proline dehydrogenase (oxidase) 2
novel_NIR_17554	chr7	30207935	30212235	+	30211894	30212235	A5SS&ES	ENSMUST00000122876.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000036892.13	Prodh2	chr7	protein_coding	proline dehydrogenase (oxidase) 2
novel_NIR_17555	chr7	30210648	30210772	+	30210648	30211737	A3SS	ENSMUST00000122876.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	4	0	4	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000036892.13	Prodh2	chr7	protein_coding	proline dehydrogenase (oxidase) 2
novel_NIR_17556	chr7	30210648	30211352	+	30210648	30211737	A3SS	ENSMUST00000122876.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000036892.13	Prodh2	chr7	protein_coding	proline dehydrogenase (oxidase) 2
novel_NIR_17557	chr7	30210648	30211394	+	30210648	30211737	A3SS	ENSMUST00000122876.2	novel	1.00	50	0	50	0	y	1.00	47	0	47	0	y	1.00	1	0	1	0	n	0.91	42	4	42	4	y	1.00	29	0	29	0	y	-	-	-	-	-	-	0.97	70	2	70	2	y	1.00	15	0	15	0	y	1.00	39	0	39	0	y	1.00	51	0	51	0	y	1.00	51	0	51	0	y	0.93	51	4	51	4	y	ENSMUSG00000036892.13	Prodh2	chr7	protein_coding	proline dehydrogenase (oxidase) 2
novel_NIR_17558	chr7	30210648	30212240	+	30210648	30211737	A3SS&ES	ENSMUST00000122876.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000036892.13	Prodh2	chr7	protein_coding	proline dehydrogenase (oxidase) 2
novel_NIR_17559	chr7	30226388	30226567	-	30225925	30226567	A3SS	ENSMUST00000044338.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000036882.8	Arhgap33	chr7	protein_coding	Rho GTPase activating protein 33
novel_NIR_17560	chr7	30246149	30248466	-	30245852	30248466	A3SS	ENSMUST00000215288.2	novel	0.00	0	6	0	6	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.43	3	4	3	4	y	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	ENSMUSG00000036864.17	Proser3	chr7	protein_coding	proline and serine rich 3
novel_NIR_17561	chr7	30251147	30251633	-	30249128	30251633	A3SS	ENSMUST00000153594.3	novel	0.00	0	5	0	5	n	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	0.50	1	1	1	1	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000036864.17	Proser3	chr7	protein_coding	proline and serine rich 3
novel_NIR_17562	chr7	30251147	30251633	-	30250259	30251633	A3SS	ENSMUST00000215288.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	7	0	7	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000036864.17	Proser3	chr7	protein_coding	proline and serine rich 3
novel_NIR_17563	chr7	30261559	30261826	-	30261559	30262221	A5SS	ENSMUST00000207031.2	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000036835.8	Psenen	chr7	protein_coding	presenilin enhancer gamma secretase subunit
novel_NIR_17564	chr7	30262391	30262477	-	30262312	30262477	A3SS	ENSMUST00000207797.2	novel	0.00	0	7	0	7	n	0.09	1	10	1	10	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.06	1	16	1	16	n	0.00	0	10	0	10	n	0.25	2	6	2	6	y	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.00	0	20	0	20	n	0.00	0	19	0	19	n	ENSMUSG00000036835.8	Psenen	chr7	protein_coding	presenilin enhancer gamma secretase subunit
novel_NIR_17565	chr7	30263726	30263873	+	30263726	30264520	A3SS	ENSMUST00000167202.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	6	0	6	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000078765.12	U2af1l4	chr7	protein_coding	U2 small nuclear RNA auxiliary factor 1-like 4
novel_NIR_17566	chr7	30263726	30263965	+	30263726	30264520	A3SS	ENSMUST00000167202.8	novel	-	-	-	-	-	-	0.50	1	1	1	1	n	0.14	1	6	1	6	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000078765.12	U2af1l4	chr7	protein_coding	U2 small nuclear RNA auxiliary factor 1-like 4
novel_NIR_17567	chr7	30264037	30264128	+	30264020	30264128	A5SS	ENSMUST00000163464.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000078765.12	U2af1l4	chr7	protein_coding	U2 small nuclear RNA auxiliary factor 1-like 4
novel_NIR_17568	chr7	30281931	30282142	-	30281931	30282213	A5SS	ENSMUST00000006470.14	novel	0.10	1	9	1	9	n	0.00	0	9	0	9	n	0.00	0	18	0	18	n	0.00	0	26	0	26	n	0.00	0	19	0	19	n	0.00	0	6	0	6	n	0.09	1	10	1	10	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.05	1	20	1	20	n	0.00	0	16	0	16	n	0.18	2	9	2	9	y	ENSMUSG00000006307.17	Kmt2b	chr7	protein_coding	lysine (K)-specific methyltransferase 2B
novel_NIR_17569	chr7	30316587	30318402	-	30316587	30322805	A5SS	ENSMUST00000208352.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036751.8	Cox6b1	chr7	protein_coding	cytochrome c oxidase, subunit 6B1
novel_NIR_17570	chr7	30316587	30322887	-	30316587	30322805	A5SS	ENSMUST00000208352.2	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	ENSMUSG00000036751.8	Cox6b1	chr7	protein_coding	cytochrome c oxidase, subunit 6B1
novel_NIR_17571	chr7	30316587	30323925	-	30316587	30322805	5pMXE	ENSMUST00000208352.2	novel	1.00	8	0	8	0	y	1.00	9	0	9	0	y	0.85	11	2	11	2	y	1.00	8	0	8	0	y	1.00	13	0	13	0	y	1.00	6	0	6	0	y	1.00	18	0	18	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	8	0	8	0	y	1.00	9	0	9	0	y	1.00	9	0	9	0	y	ENSMUSG00000036751.8	Cox6b1	chr7	protein_coding	cytochrome c oxidase, subunit 6B1
novel_NIR_17572	chr7	30360495	30361054	-	30359753	30361054	A3SS	ENSMUST00000146232.2	novel	0.17	1	5	1	5	n	0.00	0	11	0	11	n	0.42	5	7	5	7	y	0.12	2	14	2	14	n	0.00	0	12	0	12	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.10	1	9	1	9	n	0.20	1	4	1	4	n	0.07	1	14	1	14	n	0.00	0	7	0	7	n	0.06	1	16	1	16	n	ENSMUSG00000094365.2	Gm21982	chr7	lncRNA	predicted gene 21982
novel_NIR_17573	chr7	30427981	30428627	-	30428166	30428627	A3SS&ES	ENSMUST00000207263.2	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.70	7	3	7	3	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000006315.10	Tmem147	chr7	protein_coding	transmembrane protein 147
novel_NIR_17574	chr7	30429279	30429763	+	30429279	30431839	A3SS	ENSMUST00000180820.8	novel	0.24	5	16	5	16	y	0.10	2	19	2	19	n	0.06	1	17	1	17	n	0.00	0	14	0	14	n	0.24	8	25	8	25	y	0.00	0	16	0	16	n	0.11	3	25	3	25	n	0.16	3	16	3	16	y	0.00	0	18	0	18	n	0.24	5	16	5	16	y	0.14	3	18	3	18	n	0.16	5	27	5	27	n	ENSMUSG00000097320.9	Tmem147os	chr7	lncRNA	transmembrane protein 147, opposite strand
novel_NIR_17575	chr7	30435387	30437086	+	30435387	30454234	A3SS	ENSMUST00000182488.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	1	1	1	1	n	ENSMUSG00000109224.2	Tmem147os	chr7	lncRNA	transmembrane protein 147, opposite strand
novel_NIR_17576	chr7	30435387	30438660	+	30435387	30436726	A3SS&ES	ENSMUST00000180820.8	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.08	1	12	1	12	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.17	2	10	2	10	y	0.00	0	7	0	7	n	ENSMUSG00000097320.9	Tmem147os	chr7	lncRNA	transmembrane protein 147, opposite strand
novel_NIR_17577	chr7	30435387	30438660	+	30435387	30454234	A3SS	ENSMUST00000182488.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	1	0	1	n	ENSMUSG00000109224.2	Tmem147os	chr7	lncRNA	transmembrane protein 147, opposite strand
novel_NIR_17578	chr7	30436784	30437086	+	30436784	30444974	A3SS	ENSMUST00000180820.8	novel	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.78	7	2	7	2	y	0.67	2	1	2	1	y	0.75	3	1	3	1	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	6	0	6	0	y	1.00	5	0	5	0	y	ENSMUSG00000097320.9	Tmem147os	chr7	lncRNA	transmembrane protein 147, opposite strand
novel_NIR_17579	chr7	30622055	30642025	+	30622055	30646101	A3SS	ENSMUST00000206970.2	novel	-	-	-	-	-	-	1.00	22	0	22	0	y	1.00	24	0	24	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	24	0	24	0	y	-	-	-	-	-	-	ENSMUSG00000108546.2	Gm44662	chr7	lncRNA	predicted gene 44662
novel_NIR_17580	chr7	30622180	30643322	-	30622180	30623471	5pMXE	ENSMUST00000217812.2	novel	0.00	0	45	0	45	n	0.00	0	60	0	60	n	0.05	3	58	3	58	n	0.00	0	38	0	38	n	0.00	0	44	0	44	n	0.31	10	22	10	22	y	0.17	7	34	7	34	y	0.11	3	24	3	24	n	0.03	2	73	2	73	n	0.08	7	76	7	76	n	0.01	1	106	1	106	n	0.05	10	186	10	186	n	ENSMUSG00000056978.9	Hamp2	chr7	protein_coding	hepcidin antimicrobial peptide 2
novel_NIR_17581	chr7	30622180	30643322	-	30622180	30623961	5pMXE	ENSMUST00000205641.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	10	0	10	0	y	1.00	7	0	7	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	7	0	7	0	y	1.00	1	0	1	0	n	1.00	10	0	10	0	y	ENSMUSG00000056978.9	Hamp2	chr7	protein_coding	hepcidin antimicrobial peptide 2
novel_NIR_17582	chr7	30654227	30654715	-	30654227	30655225	A5SS	ENSMUST00000166340.2	novel	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.75	3	1	3	1	y	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000058239.14	Usf2	chr7	protein_coding	upstream transcription factor 2
novel_NIR_17583	chr7	30654618	30655225	-	30654227	30655225	A3SS	ENSMUST00000166340.2	novel	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.50	3	3	3	3	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000058239.14	Usf2	chr7	protein_coding	upstream transcription factor 2
novel_NIR_17584	chr7	30658739	30659445	-	30658739	30665394	A5SS	ENSMUST00000098553.11	novel	0.00	0	15	0	15	n	0.00	0	14	0	14	n	0.15	2	11	2	11	y	0.00	0	17	0	17	n	0.00	0	31	0	31	n	0.08	1	12	1	12	n	0.02	1	40	1	40	n	0.00	0	14	0	14	n	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.00	0	14	0	14	n	0.07	1	13	1	13	n	ENSMUSG00000001247.17	Lsr	chr7	protein_coding	lipolysis stimulated lipoprotein receptor
novel_NIR_17585	chr7	30746827	30748717	-	30746827	30750781	A5SS	ENSMUST00000206341.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000036578.8	Fxyd7	chr7	protein_coding	FXYD domain-containing ion transport regulator 7
novel_NIR_17586	chr7	30752485	30753318	-	30752486	30753318	A3SS	ENSMUST00000205807.2	novel	0.02	1	48	1	48	n	0.16	11	58	11	58	y	0.11	4	31	4	31	n	0.08	4	45	4	45	n	0.07	4	50	4	50	n	0.09	2	20	2	20	n	0.14	8	48	8	48	n	0.24	8	26	8	26	y	0.21	10	37	10	37	y	0.17	10	49	10	49	y	0.22	11	39	11	39	y	0.07	5	62	5	62	n	ENSMUSG00000036570.15	Fxyd1	chr7	protein_coding	FXYD domain-containing ion transport regulator 1
novel_NIR_17587	chr7	30753795	30754471	-	30753795	30754098	5pMXE	ENSMUST00000206860.2	novel	0.06	1	15	1	15	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.33	3	6	3	6	y	0.00	0	1	0	1	n	0.09	1	10	1	10	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.12	1	7	1	7	n	ENSMUSG00000036570.15	Fxyd1	chr7	protein_coding	FXYD domain-containing ion transport regulator 1
novel_NIR_17588	chr7	30753795	30754471	-	30753795	30754176	5pMXE	ENSMUST00000206012.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000036570.15	Fxyd1	chr7	protein_coding	FXYD domain-containing ion transport regulator 1
novel_NIR_17589	chr7	30753795	30754568	-	30753795	30754098	5pMXE	ENSMUST00000206860.2	novel	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.22	2	7	2	7	y	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.33	3	6	3	6	y	0.00	0	10	0	10	n	0.00	0	7	0	7	n	ENSMUSG00000036570.15	Fxyd1	chr7	protein_coding	FXYD domain-containing ion transport regulator 1
novel_NIR_17590	chr7	30753795	30754568	-	30753795	30754176	5pMXE	ENSMUST00000206012.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036570.15	Fxyd1	chr7	protein_coding	FXYD domain-containing ion transport regulator 1
novel_NIR_17591	chr7	30753795	30755438	-	30753795	30754098	5pMXE	ENSMUST00000206860.2	novel	0.29	6	15	6	15	y	0.00	0	6	0	6	n	0.22	2	7	2	7	y	0.00	0	2	0	2	n	0.54	7	6	7	6	y	0.00	0	1	0	1	n	0.09	1	10	1	10	n	0.11	1	8	1	8	n	0.40	4	6	4	6	y	0.00	0	6	0	6	n	0.09	1	10	1	10	n	0.46	6	7	6	7	y	ENSMUSG00000036570.15	Fxyd1	chr7	protein_coding	FXYD domain-containing ion transport regulator 1
novel_NIR_17592	chr7	30753795	30755438	-	30753795	30754176	5pMXE	ENSMUST00000206012.2	novel	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	6	0	6	0	y	ENSMUSG00000036570.15	Fxyd1	chr7	protein_coding	FXYD domain-containing ion transport regulator 1
novel_NIR_17593	chr7	30753795	30755438	-	30753795	30756225	A5SS	ENSMUST00000205392.2	novel	0.35	6	11	6	11	y	0.00	0	18	0	18	n	0.11	2	16	2	16	n	0.00	0	9	0	9	n	0.22	7	25	7	25	y	0.00	0	24	0	24	n	0.03	1	32	1	32	n	0.04	1	22	1	22	n	0.25	4	12	4	12	y	0.00	0	23	0	23	n	0.05	1	21	1	21	n	0.27	6	16	6	16	y	ENSMUSG00000036570.15	Fxyd1	chr7	protein_coding	FXYD domain-containing ion transport regulator 1
novel_NIR_17594	chr7	30753795	30755983	-	30753795	30754098	5pMXE	ENSMUST00000206860.2	novel	0.12	2	15	2	15	n	0.00	0	6	0	6	n	0.22	2	7	2	7	y	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.11	1	8	1	8	n	0.00	0	6	0	6	n	0.14	1	6	1	6	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	ENSMUSG00000036570.15	Fxyd1	chr7	protein_coding	FXYD domain-containing ion transport regulator 1
novel_NIR_17595	chr7	30753795	30755983	-	30753795	30754176	5pMXE	ENSMUST00000206012.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036570.15	Fxyd1	chr7	protein_coding	FXYD domain-containing ion transport regulator 1
novel_NIR_17596	chr7	30753795	30755983	-	30753795	30756225	A5SS	ENSMUST00000205392.2	novel	0.15	2	11	2	11	y	0.00	0	18	0	18	n	0.11	2	16	2	16	n	0.00	0	9	0	9	n	0.00	0	25	0	25	n	0.00	0	24	0	24	n	0.00	0	32	0	32	n	0.04	1	22	1	22	n	0.00	0	12	0	12	n	0.04	1	23	1	23	n	0.00	0	21	0	21	n	0.00	0	16	0	16	n	ENSMUSG00000036570.15	Fxyd1	chr7	protein_coding	FXYD domain-containing ion transport regulator 1
novel_NIR_17597	chr7	30753795	30756451	-	30753795	30754098	5pMXE	ENSMUST00000206860.2	novel	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.25	2	6	2	6	y	0.67	2	1	2	1	y	0.00	0	10	0	10	n	0.33	4	8	4	8	y	0.14	1	6	1	6	n	0.25	2	6	2	6	y	0.00	0	10	0	10	n	0.00	0	7	0	7	n	ENSMUSG00000036570.15	Fxyd1	chr7	protein_coding	FXYD domain-containing ion transport regulator 1
novel_NIR_17598	chr7	30753795	30756451	-	30753795	30754176	5pMXE	ENSMUST00000206012.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036570.15	Fxyd1	chr7	protein_coding	FXYD domain-containing ion transport regulator 1
novel_NIR_17599	chr7	30753795	30756451	-	30753795	30754743	5pMXE	ENSMUST00000206328.2	novel	0.00	0	38	0	38	n	0.00	0	40	0	40	n	0.00	0	22	0	22	n	0.00	0	38	0	38	n	0.04	2	43	2	43	n	0.13	2	13	2	13	n	0.00	0	50	0	50	n	0.22	4	14	4	14	y	0.03	1	33	1	33	n	0.03	2	56	2	56	n	0.00	0	37	0	37	n	0.00	0	51	0	51	n	ENSMUSG00000036570.15	Fxyd1	chr7	protein_coding	FXYD domain-containing ion transport regulator 1
novel_NIR_17600	chr7	30753795	30756451	-	30753795	30756225	A5SS	ENSMUST00000205392.2	novel	0.00	0	11	0	11	n	0.00	0	18	0	18	n	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.07	2	25	2	25	n	0.08	2	24	2	24	n	0.00	0	32	0	32	n	0.15	4	22	4	22	y	0.08	1	12	1	12	n	0.08	2	23	2	23	n	0.00	0	21	0	21	n	0.00	0	16	0	16	n	ENSMUSG00000036570.15	Fxyd1	chr7	protein_coding	FXYD domain-containing ion transport regulator 1
novel_NIR_17601	chr7	30753859	30754098	-	30753795	30754098	A3SS	ENSMUST00000206860.2	novel	0.06	1	15	1	15	n	0.14	1	6	1	6	n	0.12	1	7	1	7	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.09	1	10	1	10	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.25	2	6	2	6	y	0.00	0	10	0	10	n	0.00	0	7	0	7	n	ENSMUSG00000036570.15	Fxyd1	chr7	protein_coding	FXYD domain-containing ion transport regulator 1
novel_NIR_17602	chr7	30753859	30754098	-	30753859	30754190	A5SS	ENSMUST00000071697.11	novel	0.11	1	8	1	8	n	0.33	1	2	1	2	n	0.33	1	2	1	2	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.08	1	12	1	12	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.29	2	5	2	5	y	0.00	0	8	0	8	n	0.00	0	3	0	3	n	ENSMUSG00000036570.15	Fxyd1	chr7	protein_coding	FXYD domain-containing ion transport regulator 1
novel_NIR_17603	chr7	30753859	30754743	-	30753795	30754743	A3SS	ENSMUST00000206328.2	novel	0.07	3	38	3	38	n	0.15	7	40	7	40	y	0.04	1	22	1	22	n	0.14	6	38	6	38	n	0.07	3	43	3	43	n	0.19	3	13	3	13	y	0.04	2	50	2	50	n	0.00	0	14	0	14	n	0.00	0	33	0	33	n	0.07	4	56	4	56	n	0.05	2	37	2	37	n	0.02	1	51	1	51	n	ENSMUSG00000036570.15	Fxyd1	chr7	protein_coding	FXYD domain-containing ion transport regulator 1
novel_NIR_17604	chr7	30753859	30754743	-	30753859	30754190	5pMXE	ENSMUST00000071697.11	novel	0.27	3	8	3	8	y	0.78	7	2	7	2	y	0.33	1	2	1	2	n	0.43	6	8	6	8	y	0.27	3	8	3	8	y	0.50	3	3	3	3	y	0.14	2	12	2	12	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.44	4	5	4	5	y	0.20	2	8	2	8	y	0.25	1	3	1	3	n	ENSMUSG00000036570.15	Fxyd1	chr7	protein_coding	FXYD domain-containing ion transport regulator 1
novel_NIR_17605	chr7	30753859	30756225	-	30753859	30754190	5pMXE	ENSMUST00000071697.11	novel	0.00	0	8	0	8	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.40	2	3	2	3	y	0.14	2	12	2	12	n	0.43	3	4	3	4	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	ENSMUSG00000036570.15	Fxyd1	chr7	protein_coding	FXYD domain-containing ion transport regulator 1
novel_NIR_17606	chr7	30798517	30798640	-	30798333	30798640	A3SS	ENSMUST00000171259.2	novel	0.85	11	2	11	2	y	1.00	17	0	17	0	y	0.71	10	4	10	4	y	1.00	5	0	5	0	y	1.00	23	0	23	0	y	1.00	7	0	7	0	y	1.00	18	0	18	0	y	1.00	11	0	11	0	y	1.00	6	0	6	0	y	0.86	18	3	18	3	y	1.00	21	0	21	0	y	1.00	7	0	7	0	y	ENSMUSG00000001249.15	Hpn	chr7	protein_coding	hepsin
novel_NIR_17607	chr7	30798517	30798640	-	30798555	30798640	A3SS	ENSMUST00000171225.2	novel	0.69	11	5	11	5	y	0.81	17	4	17	4	y	0.71	10	4	10	4	y	0.50	5	5	5	5	y	0.82	23	5	23	5	y	0.44	7	9	7	9	y	0.75	18	6	18	6	y	0.73	11	4	11	4	y	0.60	6	4	6	4	y	0.72	18	7	18	7	y	0.66	21	11	21	11	y	0.50	7	7	7	7	y	ENSMUSG00000001249.15	Hpn	chr7	protein_coding	hepsin
novel_NIR_17608	chr7	30798535	30798640	-	30798333	30798640	A3SS	ENSMUST00000171259.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000001249.15	Hpn	chr7	protein_coding	hepsin
novel_NIR_17609	chr7	30798535	30798640	-	30798555	30798640	A3SS	ENSMUST00000171225.2	novel	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.38	3	5	3	5	y	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	ENSMUSG00000001249.15	Hpn	chr7	protein_coding	hepsin
novel_NIR_17610	chr7	30810198	30810975	-	30810198	30810288	5pMXE	ENSMUST00000039435.15	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.00	0	4	0	4	n	0.50	1	1	1	1	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	-	-	-	-	-	-	ENSMUSG00000001249.15	Hpn	chr7	protein_coding	hepsin
novel_NIR_17611	chr7	30810198	30810975	-	30810198	30810292	5pMXE	ENSMUST00000168623.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000001249.15	Hpn	chr7	protein_coding	hepsin
novel_NIR_17612	chr7	30810198	30810975	-	30810198	30810387	A5SS	ENSMUST00000164929.3	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000001249.15	Hpn	chr7	protein_coding	hepsin
novel_NIR_17613	chr7	30810198	30811011	-	30810198	30810288	5pMXE	ENSMUST00000039435.15	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.20	1	4	1	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	3	3	3	3	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.29	2	5	2	5	y	-	-	-	-	-	-	ENSMUSG00000001249.15	Hpn	chr7	protein_coding	hepsin
novel_NIR_17614	chr7	30810198	30811011	-	30810198	30810292	5pMXE	ENSMUST00000168623.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000001249.15	Hpn	chr7	protein_coding	hepsin
novel_NIR_17615	chr7	30810198	30811011	-	30810198	30810387	A5SS	ENSMUST00000164929.3	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000001249.15	Hpn	chr7	protein_coding	hepsin
novel_NIR_17616	chr7	30810198	30813578	-	30810198	30810288	5pMXE	ENSMUST00000039435.15	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.43	3	4	3	4	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	3	3	3	3	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	-	-	-	-	-	-	ENSMUSG00000001249.15	Hpn	chr7	protein_coding	hepsin
novel_NIR_17617	chr7	30810198	30813578	-	30810198	30810292	5pMXE	ENSMUST00000168623.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000001249.15	Hpn	chr7	protein_coding	hepsin
novel_NIR_17618	chr7	30810198	30813578	-	30810198	30810387	5pMXE	ENSMUST00000164929.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000001249.15	Hpn	chr7	protein_coding	hepsin
novel_NIR_17619	chr7	30810198	30814561	-	30810198	30810288	5pMXE	ENSMUST00000039435.15	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.20	1	4	1	4	n	0.83	5	1	5	1	y	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.29	2	5	2	5	y	1.00	3	0	3	0	y	ENSMUSG00000001249.15	Hpn	chr7	protein_coding	hepsin
novel_NIR_17620	chr7	30810198	30814561	-	30810198	30810292	5pMXE	ENSMUST00000168623.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	ENSMUSG00000001249.15	Hpn	chr7	protein_coding	hepsin
novel_NIR_17621	chr7	30810198	30814561	-	30810198	30810387	5pMXE	ENSMUST00000164929.3	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	ENSMUSG00000001249.15	Hpn	chr7	protein_coding	hepsin
novel_NIR_17622	chr7	30824646	30826507	-	30824646	30826091	5pMXE	ENSMUST00000211945.2	novel	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.29	2	5	2	5	y	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	31	0	31	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	ENSMUSG00000019194.16	Scn1b	chr7	protein_coding	sodium channel, voltage-gated, type I, beta
novel_NIR_17623	chr7	30833942	30835114	-	30833942	30834951	A5SS	ENSMUST00000186634.7	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	ENSMUSG00000001248.16	Gramd1a	chr7	protein_coding	GRAM domain containing 1A
novel_NIR_17624	chr7	30833942	30835114	-	30833942	30835022	A5SS	ENSMUST00000001280.14	novel	0.00	0	13	0	13	n	0.00	0	15	0	15	n	0.00	0	4	0	4	n	0.20	2	8	2	8	y	0.12	2	14	2	14	n	0.00	0	4	0	4	n	0.00	0	22	0	22	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.10	1	9	1	9	n	ENSMUSG00000001248.16	Gramd1a	chr7	protein_coding	GRAM domain containing 1A
novel_NIR_17625	chr7	30833942	30835114	-	30833942	30835133	A5SS	ENSMUST00000202814.3	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000001248.16	Gramd1a	chr7	protein_coding	GRAM domain containing 1A
novel_NIR_17626	chr7	3294039	3297888	-	3294039	3297881	A5SS	ENSMUST00000108653.4	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.16	6	31	6	31	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.21	6	23	6	23	y	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000078817.5	Nlrp12	chr7	protein_coding	NLR family, pyrin domain containing 12
novel_NIR_17627	chr7	3294039;3294803	3294726;3297881	-	3294039	3297881	cassetteExon	ENSMUST00000108653.4	novel	0.00	0.0	2	0;0	2	n	0.00	0.0	3	0;0	3	n	0.15	5.5	31	5;6	31	y	0.00	0.0	5	0;0	5	n	0.00	0.0	5	0;0	5	n	0.02	0.5	23	1;0	23	n	0.00	0.0	4	0;0	4	n	0.05	0.5	9	1;0	9	n	0.00	0.0	2	0;0	2	n	0.00	0.0	1	0;0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000078817.5	Nlrp12	chr7	protein_coding	NLR family, pyrin domain containing 12
novel_NIR_17628	chr7	3341613	3341728	+	3337850	3341728	A5SS	ENSMUST00000203328.4	novel	0.71	5	2	5	2	y	1.00	2	0	2	0	y	0.38	3	5	3	5	y	0.43	6	8	6	8	y	0.93	14	1	14	1	y	0.75	9	3	9	3	y	0.67	2	1	2	1	y	1.00	10	0	10	0	y	0.67	2	1	2	1	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	0.90	9	1	9	1	y	ENSMUSG00000068566.14	Myadm	chr7	protein_coding	myeloid-associated differentiation marker
novel_NIR_17629	chr7	3341613	3341728	+	3339155	3341728	A5SS	ENSMUST00000096744.8	novel	0.62	5	3	5	3	y	0.40	2	3	2	3	y	0.30	3	7	3	7	y	0.86	6	1	6	1	y	0.67	14	7	14	7	y	0.75	9	3	9	3	y	0.67	2	1	2	1	y	1.00	10	0	10	0	y	1.00	2	0	2	0	y	0.50	3	3	3	3	y	0.60	3	2	3	2	y	0.69	9	4	9	4	y	ENSMUSG00000068566.14	Myadm	chr7	protein_coding	myeloid-associated differentiation marker
novel_NIR_17630	chr7	3341613	3341728	+	3339317	3341728	A5SS	ENSMUST00000203566.3	novel	1.00	5	0	5	0	y	1.00	2	0	2	0	y	0.50	3	3	3	3	y	0.86	6	1	6	1	y	0.78	14	4	14	4	y	0.90	9	1	9	1	y	0.25	2	6	2	6	y	0.77	10	3	10	3	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	0.90	9	1	9	1	y	ENSMUSG00000068566.14	Myadm	chr7	protein_coding	myeloid-associated differentiation marker
novel_NIR_17631	chr7	3341613	3341728	+	3340070	3341728	A5SS	ENSMUST00000204541.2	novel	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	6	0	6	0	y	1.00	14	0	14	0	y	1.00	9	0	9	0	y	1.00	2	0	2	0	y	1.00	10	0	10	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	9	0	9	0	y	ENSMUSG00000068566.14	Myadm	chr7	protein_coding	myeloid-associated differentiation marker
novel_NIR_17632	chr7	33886418	33888774	-	33884236	33888774	A3SS	ENSMUST00000148381.3	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000002635.12	Pdcd2l	chr7	protein_coding	programmed cell death 2-like
novel_NIR_17633	chr7	33907735	33909111	-	33907735	33912827	A5SS	ENSMUST00000205865.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036427.6	Gpi1	chr7	protein_coding	glucose-6-phosphate isomerase 1
novel_NIR_17634	chr7	34352104	34353672	-	34352107	34353672	A3SS	ENSMUST00000108069.8	novel	0.09	1	10	1	10	n	0.00	0	6	0	6	n	0.15	4	22	4	22	y	0.22	2	7	2	7	y	0.00	0	22	0	22	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.20	3	12	3	12	y	ENSMUSG00000030499.10	Kctd15	chr7	protein_coding	potassium channel tetramerisation domain containing 15
novel_NIR_17635	chr7	34352107	34354588	-	34352107	34352359	5pMXE	ENSMUST00000127425.4	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030499.10	Kctd15	chr7	protein_coding	potassium channel tetramerisation domain containing 15
novel_NIR_17636	chr7	34352107	34354588	-	34352107	34352632	5pMXE	ENSMUST00000155093.6	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030499.10	Kctd15	chr7	protein_coding	potassium channel tetramerisation domain containing 15
novel_NIR_17637	chr7	34352107	34354588	-	34352107	34353672	5pMXE	ENSMUST00000108069.8	novel	0.00	0	10	0	10	n	0.25	2	6	2	6	y	0.00	0	22	0	22	n	0.00	0	7	0	7	n	0.04	1	22	1	22	n	0.20	1	4	1	4	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.15	2	11	2	11	y	0.00	0	7	0	7	n	0.00	0	12	0	12	n	ENSMUSG00000030499.10	Kctd15	chr7	protein_coding	potassium channel tetramerisation domain containing 15
novel_NIR_17638	chr7	34352107	34354588	-	34352107	34354705	A5SS	ENSMUST00000032709.3	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030499.10	Kctd15	chr7	protein_coding	potassium channel tetramerisation domain containing 15
novel_NIR_17639	chr7	34356065	34356482	+	34352735	34356482	A5SS	ENSMUST00000146269.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000085923.2	Gm12781	chr7	lncRNA	predicted gene 12781
novel_NIR_17640	chr7	34356636	34356735	+	34356636	34359729	A3SS	ENSMUST00000146269.2	novel	0.33	1	2	1	2	n	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	4	2	4	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.86	6	1	6	1	y	0.62	5	3	5	3	y	1.00	1	0	1	0	n	ENSMUSG00000085923.2	Gm12781	chr7	lncRNA	predicted gene 12781
novel_NIR_17641	chr7	34359598	34359729	+	34356636	34359729	A5SS	ENSMUST00000146269.2	novel	0.96	45	2	45	2	y	1.00	42	0	42	0	y	0.99	66	1	66	1	y	1.00	47	0	47	0	y	0.96	51	2	51	2	y	1.00	48	0	48	0	y	1.00	65	0	65	0	y	1.00	54	0	54	0	y	1.00	40	0	40	0	y	0.98	60	1	60	1	y	0.92	35	3	35	3	y	1.00	41	0	41	0	y	ENSMUSG00000085923.2	Gm12781	chr7	lncRNA	predicted gene 12781
novel_NIR_17642	chr7	3471100	3472928	-	3471100	3471790	5pMXE	ENSMUST00000204020.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000107585.2	3300002P13Rik	chr7	lncRNA	RIKEN cDNA 3300002P13 gene
novel_NIR_17643	chr7	34786160	34789536	+	34786327	34789536	5pMXE	ENSMUST00000205323.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000108657.2	Gm35611	chr7	lncRNA	predicted gene, 35611
novel_NIR_17644	chr7	34786531	34789536	+	34786327	34789536	A5SS	ENSMUST00000205323.2	novel	1.00	3	0	3	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.50	2	2	2	2	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000108657.2	Gm35611	chr7	lncRNA	predicted gene, 35611
novel_NIR_17645	chr7	35009774	35009865	-	35008811	35009865	A3SS	ENSMUST00000079693.12	novel	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.00	0	21	0	21	n	0.00	0	6	0	6	n	0.18	2	9	2	9	y	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.00	0	23	0	23	n	ENSMUSG00000063808.15	Gpatch1	chr7	protein_coding	G patch domain containing 1
novel_NIR_17646	chr7	35109117	35109877	+	35109117	35113569	A3SS	ENSMUST00000141704.8	novel	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.00	0	14	0	14	n	0.40	2	3	2	3	y	0.00	0	13	0	13	n	ENSMUSG00000023072.15	Cep89	chr7	protein_coding	centrosomal protein 89
novel_NIR_17647	chr7	35120383	35121493	+	35120383	35127025	A3SS	ENSMUST00000206230.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000023072.15	Cep89	chr7	protein_coding	centrosomal protein 89
novel_NIR_17648	chr7	35291307	35302980	+	35291307	35300915	3pMXE	ENSMUST00000188906.7	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.75	3	1	3	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000034867.17	Ankrd27	chr7	protein_coding	ankyrin repeat domain 27 (VPS9 domain)
novel_NIR_17649	chr7	35449298	35453680	-	35449298;35452181	35452040;35453680	ES	ENSMUST00000051377.15	novel	0.27	2	5.5	2	6;5	y	0.00	0	5.5	0	5;6	n	0.00	0	2.0	0	3;1	n	0.00	0	10.0	0	13;7	n	0.00	0	9.5	0	10;9	n	0.00	0	4.0	0	1;7	n	0.00	0	7.0	0	8;6	n	0.00	0	3.5	0	5;2	n	0.00	0	7.0	0	7;7	n	0.00	0	15.5	0	12;19	n	0.00	0	4.0	0	5;3	n	0.00	0	17.5	0	17;18	n	ENSMUSG00000043671.15	Dpy19l3	chr7	protein_coding	dpy-19-like 3 (C. elegans)
novel_NIR_17650	chr7	35449298	35453680	-	35452181	35453680	3pMXE	ENSMUST00000124116.2	novel	0.29	2	5	2	5	y	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	19	0	19	n	0.00	0	3	0	3	n	0.00	0	18	0	18	n	ENSMUSG00000043671.15	Dpy19l3	chr7	protein_coding	dpy-19-like 3 (C. elegans)
novel_NIR_17651	chr7	35475997	35491073	-	35475997;35487257	35487143;35491073	ES	ENSMUST00000061586.11	novel	0.00	0	8.5	0	5;12	n	0.00	0	4.5	0	5;4	n	0.00	0	13.0	0	13;13	n	0.00	0	9.5	0	11;8	n	0.09	2	20.5	2	19;22	n	0.00	0	7.0	0	4;10	n	0.21	3	11.5	3	12;11	y	0.00	0	9.0	0	6;12	n	0.00	0	11.5	0	13;10	n	0.00	0	16.0	0	14;18	n	0.00	0	5.5	0	5;6	n	0.08	1	11.0	1	14;8	n	ENSMUSG00000044452.11	Zfp507	chr7	protein_coding	zinc finger protein 507
novel_NIR_17652	chr7	35491187	35493482	-	35491187	35492948	A5SS	ENSMUST00000061586.11	novel	0.25	1	3	1	3	n	0.00	0	7	0	7	n	0.05	1	20	1	20	n	0.00	0	5	0	5	n	0.27	4	11	4	11	y	0.00	0	8	0	8	n	0.20	2	8	2	8	y	0.00	0	11	0	11	n	0.14	1	6	1	6	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.10	1	9	1	9	n	ENSMUSG00000044452.11	Zfp507	chr7	protein_coding	zinc finger protein 507
novel_NIR_17653	chr7	35491187	35493482	-	35491187	35494721	A5SS	ENSMUST00000205670.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000044452.11	Zfp507	chr7	protein_coding	zinc finger protein 507
novel_NIR_17654	chr7	35491187	35493482	-	35491187	35500863	A5SS	ENSMUST00000187282.3	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.80	4	1	4	1	y	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	ENSMUSG00000044452.11	Zfp507	chr7	protein_coding	zinc finger protein 507
novel_NIR_17655	chr7	35495043	35499233	-	35495043	35500863	A5SS	ENSMUST00000061586.11	novel	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.22	2	7	2	7	y	0.08	1	11	1	11	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.25	2	6	2	6	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	ENSMUSG00000044452.11	Zfp507	chr7	protein_coding	zinc finger protein 507
novel_NIR_17656	chr7	35495043;35499362	35499233;35500863	-	35495043	35500863	cassetteExon	ENSMUST00000061586.11	novel	0.33	2.0	4	0;4	4	n	0.00	0.0	6	0;0	6	n	0.00	0.0	9	0;0	9	n	0.12	1.0	7	2;0	7	n	0.15	2.0	11	1;3	11	n	0.00	0.0	7	0;0	7	n	0.14	0.5	3	0;1	3	n	0.29	2.5	6	2;3	6	y	0.00	0.0	8	0;0	8	n	0.04	0.5	11	0;1	11	n	0.17	1.0	5	0;2	5	n	0.00	0.0	5	0;0	5	n	ENSMUSG00000044452.11	Zfp507	chr7	protein_coding	zinc finger protein 507
novel_NIR_17657	chr7	35499362	35500863	-	35491187	35500863	A3SS	ENSMUST00000187282.3	novel	1.00	4	0	4	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.75	3	1	3	1	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.75	3	1	3	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	ENSMUSG00000044452.11	Zfp507	chr7	protein_coding	zinc finger protein 507
novel_NIR_17658	chr7	35499362	35500863	-	35495043	35500863	A3SS	ENSMUST00000061586.11	novel	0.50	4	4	4	4	y	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.21	3	11	3	11	n	0.00	0	7	0	7	n	0.25	1	3	1	3	n	0.33	3	6	3	6	n	0.00	0	8	0	8	n	0.08	1	11	1	11	n	0.29	2	5	2	5	y	0.00	0	5	0	5	n	ENSMUSG00000044452.11	Zfp507	chr7	protein_coding	zinc finger protein 507
novel_NIR_17659	chr7	3620498	3620616	+	3620416	3620616	A5SS	ENSMUST00000156712.2	novel	0.00	0	10	0	10	n	0.00	0	17	0	17	n	0.29	2	5	2	5	y	0.09	1	10	1	10	n	0.47	7	8	7	8	y	0.00	0	4	0	4	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	15	0	15	n	0.12	1	7	1	7	n	0.20	3	12	3	12	y	ENSMUSG00000035674.14	Ndufa3	chr7	protein_coding	NADH:ubiquinone oxidoreductase subunit A3
novel_NIR_17660	chr7	3620829	3622429	+	3621139	3622429	A5SS	ENSMUST00000150497.8	novel	0.60	3	2	3	2	y	0.40	2	3	2	3	y	0.33	2	4	2	4	y	0.33	1	2	1	2	n	0.25	1	3	1	3	n	0.75	3	1	3	1	y	1.00	3	0	3	0	y	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.12	1	7	1	7	n	1.00	1	0	1	0	n	0.60	6	4	6	4	y	ENSMUSG00000035674.14	Ndufa3	chr7	protein_coding	NADH:ubiquinone oxidoreductase subunit A3
novel_NIR_17661	chr7	3624131	3626722	-	3624131	3631827	A5SS	ENSMUST00000156194.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000006335.17	Tfpt	chr7	protein_coding	TCF3 (E2A) fusion partner
novel_NIR_17662	chr7	3624131	3626722	-	3624131	3632771	A5SS	ENSMUST00000205596.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000006335.17	Tfpt	chr7	protein_coding	TCF3 (E2A) fusion partner
novel_NIR_17663	chr7	3648583	3648992	+	3648583	3653800	A3SS	ENSMUST00000143085.8	novel	0.00	0	9	0	9	n	0.20	2	8	2	8	n	0.13	2	13	2	13	n	0.16	3	16	3	16	y	0.00	0	18	0	18	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	ENSMUSG00000035632.17	Cnot3	chr7	protein_coding	CCR4-NOT transcription complex, subunit 3
novel_NIR_17664	chr7	3648594	3648992	+	3648594	3653800	A3SS	ENSMUST00000206287.2	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.12	1	7	1	7	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	3	6	3	6	n	0.00	0	1	0	1	n	0.29	2	5	2	5	y	ENSMUSG00000035632.17	Cnot3	chr7	protein_coding	CCR4-NOT transcription complex, subunit 3
novel_NIR_17665	chr7	3648594;3649064	3648992;3653800	+	3648594	3653800	cassetteExon	ENSMUST00000206287.2	novel	0.60	1.5	1	0;3	1	n	1.00	1.0	0	1;1	0	n	0.50	1.0	1	0;2	1	n	0.00	0.0	2	0;0	2	n	1.00	1.0	0	1;1	0	n	1.00	0.5	0	1;0	0	n	0.07	0.5	7	1;0	7	n	0.60	1.5	1	0;3	1	n	-	-	-	-	-	-	0.43	4.5	6	3;6	6	y	0.00	0.0	1	0;0	1	n	0.17	1.0	5	2;0	5	n	ENSMUSG00000035632.17	Cnot3	chr7	protein_coding	CCR4-NOT transcription complex, subunit 3
novel_NIR_17666	chr7	3649064	3653800	+	3648583	3653800	A5SS	ENSMUST00000143085.8	novel	0.25	3	9	3	9	y	0.11	1	8	1	8	n	0.13	2	13	2	13	n	0.00	0	16	0	16	n	0.05	1	18	1	18	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.20	3	12	3	12	y	0.00	0	10	0	10	n	0.29	6	15	6	15	y	0.00	0	10	0	10	n	0.00	0	9	0	9	n	ENSMUSG00000035632.17	Cnot3	chr7	protein_coding	CCR4-NOT transcription complex, subunit 3
novel_NIR_17667	chr7	3649064	3653800	+	3648594	3653800	A5SS	ENSMUST00000206287.2	novel	0.75	3	1	3	1	y	1.00	1	0	1	0	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.75	3	1	3	1	y	-	-	-	-	-	-	0.50	6	6	6	6	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	ENSMUSG00000035632.17	Cnot3	chr7	protein_coding	CCR4-NOT transcription complex, subunit 3
novel_NIR_17668	chr7	3679767	3681609	-	3679767	3680423	5pMXE	ENSMUST00000038743.15	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.82	9	2	9	2	y	-	-	-	-	-	-	ENSMUSG00000019734.17	Tmc4	chr7	protein_coding	transmembrane channel-like gene family 4
novel_NIR_17669	chr7	3695117	3695730	-	3695117	3695532	A5SS	ENSMUST00000206379.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000035596.15	Mboat7	chr7	protein_coding	membrane bound O-acyltransferase domain containing 7
novel_NIR_17670	chr7	3695117	3695730	-	3695117	3695746	A5SS	ENSMUST00000131688.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035596.15	Mboat7	chr7	protein_coding	membrane bound O-acyltransferase domain containing 7
novel_NIR_17671	chr7	3695915	3697597	+	3695989	3697597	A5SS	ENSMUST00000205734.2	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.50	1	1	1	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000035585.17	Tsen34	chr7	protein_coding	tRNA splicing endonuclease subunit 34
novel_NIR_17672	chr7	3695915	3697597	+	3696864	3697597	5pMXE	ENSMUST00000123088.8	novel	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.33	2	4	2	4	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.14	1	6	1	6	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000035585.17	Tsen34	chr7	protein_coding	tRNA splicing endonuclease subunit 34
novel_NIR_17673	chr7	3695915	3697597	+	3697057	3697597	5pMXE	ENSMUST00000139396.3	novel	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.50	1	1	1	1	n	0.67	2	1	2	1	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.12	1	7	1	7	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000035585.17	Tsen34	chr7	protein_coding	tRNA splicing endonuclease subunit 34
novel_NIR_17674	chr7	3695915	3697597	+	3697413	3697597	5pMXE	ENSMUST00000137204.2	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.33	2	4	2	4	y	0.00	0	5	0	5	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000035585.17	Tsen34	chr7	protein_coding	tRNA splicing endonuclease subunit 34
novel_NIR_17675	chr7	3696453	3697597	+	3695989	3697597	A5SS	ENSMUST00000205734.2	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.50	2	2	2	2	y	0.00	0	4	0	4	n	ENSMUSG00000035585.17	Tsen34	chr7	protein_coding	tRNA splicing endonuclease subunit 34
novel_NIR_17676	chr7	3696453	3697597	+	3696864	3697597	5pMXE	ENSMUST00000123088.8	novel	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.14	1	6	1	6	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.22	2	7	2	7	y	0.50	2	2	2	2	y	0.00	0	3	0	3	n	ENSMUSG00000035585.17	Tsen34	chr7	protein_coding	tRNA splicing endonuclease subunit 34
novel_NIR_17677	chr7	3696453	3697597	+	3697057	3697597	5pMXE	ENSMUST00000139396.3	novel	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.33	2	4	2	4	y	0.50	2	2	2	2	y	0.00	0	1	0	1	n	ENSMUSG00000035585.17	Tsen34	chr7	protein_coding	tRNA splicing endonuclease subunit 34
novel_NIR_17678	chr7	3696453	3697597	+	3697413	3697597	5pMXE	ENSMUST00000137204.2	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.40	2	3	2	3	y	-	-	-	-	-	-	ENSMUSG00000035585.17	Tsen34	chr7	protein_coding	tRNA splicing endonuclease subunit 34
novel_NIR_17679	chr7	3698620	3700824	+	3698620	3703614	A3SS	ENSMUST00000108629.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.50	1	1	1	1	n	1.00	3	0	3	0	y	0.25	1	3	1	3	n	0.71	5	2	5	2	y	-	-	-	-	-	-	ENSMUSG00000035585.17	Tsen34	chr7	protein_coding	tRNA splicing endonuclease subunit 34
novel_NIR_17680	chr7	3698620;3700869	3700824;3703527	+	3698620;3698832	3698712;3703527	MXE	ENSMUST00000205287.2	novel	1.00	1.5	0.0	2;1	0;0	n	1.00	0.5	0.0	0;1	0;0	n	1.00	1.5	0.0	1;2	0;0	n	0.17	0.5	2.5	1;0	3;2	n	0.25	0.5	1.5	0;1	3;0	n	0.00	0.0	0.5	0;0	1;0	n	0.40	1.0	1.5	1;1	2;1	n	1.00	1.0	0.0	1;1	0;0	n	1.00	1.5	0.0	3;0	0;0	n	1.00	0.5	0.0	1;0	0;0	n	0.62	4.0	2.5	5;3	5;0	y	0.00	0.0	0.5	0;0	0;1	n	ENSMUSG00000035585.17	Tsen34	chr7	protein_coding	tRNA splicing endonuclease subunit 34
novel_NIR_17681	chr7	3698620;3700927	3700824;3703527	+	3698620;3698832	3698712;3703527	MXE	ENSMUST00000205287.2	novel	1.00	2.0	0.0	2;2	0;0	y	1.00	2.0	0.0	0;4	0;0	n	1.00	4.0	0.0	1;7	0;0	n	0.44	2.0	2.5	1;3	3;2	n	0.57	2.0	1.5	0;4	3;0	n	0.50	0.5	0.5	0;1	1;0	n	0.67	3.0	1.5	1;5	2;1	n	1.00	1.5	0.0	1;2	0;0	n	1.00	3.0	0.0	3;3	0;0	y	1.00	1.0	0.0	1;1	0;0	n	0.62	4.0	2.5	5;3	5;0	y	0.83	2.5	0.5	0;5	0;1	n	ENSMUSG00000035585.17	Tsen34	chr7	protein_coding	tRNA splicing endonuclease subunit 34
novel_NIR_17682	chr7	3698832;3700927	3700824;3703527	+	3698832	3703527	cassetteExon	ENSMUST00000205287.2	novel	1.00	1.0	0	0;2	0	n	1.00	3.5	0	3;4	0	y	1.00	3.5	0	0;7	0	n	0.60	3.0	2	3;3	2	y	1.00	3.5	0	3;4	0	y	1.00	1.0	0	1;1	0	n	0.71	2.5	1	0;5	1	n	1.00	1.5	0	1;2	0	n	1.00	1.5	0	0;3	0	n	1.00	1.0	0	1;1	0	n	1.00	1.5	0	0;3	0	n	0.75	3.0	1	1;5	1	n	ENSMUSG00000035585.17	Tsen34	chr7	protein_coding	tRNA splicing endonuclease subunit 34
novel_NIR_17683	chr7	3708850	3709650	+	3707767	3709650	A5SS	ENSMUST00000108624.8	novel	-	-	-	-	-	-	0.89	8	1	8	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000006333.15	Rps9	chr7	protein_coding	ribosomal protein S9
novel_NIR_17684	chr7	3708850	3709650	+	3709180	3709650	A5SS&ES	ENSMUST00000146927.2	novel	0.00	0	22	0	22	n	0.26	8	23	8	23	y	0.00	0	31	0	31	n	0.00	0	21	0	21	n	0.00	0	25	0	25	n	0.00	0	15	0	15	n	0.00	0	26	0	26	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	27	0	27	n	0.00	0	26	0	26	n	0.00	0	24	0	24	n	ENSMUSG00000006333.15	Rps9	chr7	protein_coding	ribosomal protein S9
novel_NIR_17685	chr7	3717283	3717577	-	3717283	3717586	A5SS	ENSMUST00000078451.7	novel	0.38	11	18	11	18	y	0.11	4	33	4	33	n	0.11	4	34	4	34	n	0.08	1	12	1	12	n	0.11	4	34	4	34	n	0.10	2	19	2	19	n	0.06	3	44	3	44	n	0.11	2	17	2	17	n	0.00	0	15	0	15	n	0.22	2	7	2	7	y	0.00	0	7	0	7	n	0.00	0	22	0	22	n	ENSMUSG00000058818.14	Pirb	chr7	protein_coding	paired Ig-like receptor B
novel_NIR_17686	chr7	37882946	37888093	+	37882946	37883142	3pMXE	ENSMUST00000178890.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	8	0	8	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000054676.18	1600014C10Rik	chr7	protein_coding	RIKEN cDNA 1600014C10 gene
novel_NIR_17687	chr7	39095686	39096488	-	39095689	39096488	A3SS	ENSMUST00000186976.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000046372.5	Gm5590	chr7	transcribed_processed_pseudogene	predicted gene 5590
novel_NIR_17688	chr7	39120930	39122282	+	39120930	39122286	A3SS	ENSMUST00000186855.6	novel	0.80	4	1	4	1	y	0.50	1	1	1	1	n	1.00	3	0	3	0	y	0.25	1	3	1	3	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.50	2	2	2	2	y	ENSMUSG00000030424.16	Zfp939	chr7	transcribed_unprocessed_pseudogene	zinc finger protein 939
novel_NIR_17689	chr7	39123863	39126735	+	39124196	39126735	A5SS	ENSMUST00000186855.6	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	ENSMUSG00000030424.16	Zfp939	chr7	transcribed_unprocessed_pseudogene	zinc finger protein 939
novel_NIR_17690	chr7	39193928	39194423	+	39193928	39202652	A3SS	ENSMUST00000190789.3	novel	0.10	1	9	1	9	n	0.00	0	5	0	5	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	4	0	4	0	n	-	-	-	-	-	-	0.00	0	4	0	4	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.33	1	2	1	2	n	0.40	2	3	2	3	y	0.83	5	1	5	1	n	ENSMUSG00000108621.2	Gm33989	chr7	lncRNA	predicted gene, 33989
novel_NIR_17691	chr7	39193928;39194504	39194423;39202652	+	39193928	39202652	cassetteExon	ENSMUST00000190789.3	novel	0.05	0.5	9	1;0	9	n	0.00	0.0	5	0;0	5	n	1.00	0.5	0	1;0	0	n	0.00	0.0	1	0;0	1	n	1.00	2.5	0	4;1	0	n	-	-	-	-	-	-	0.20	1.0	4	0;2	4	n	1.00	0.5	0	1;0	0	n	1.00	1.0	0	2;0	0	n	0.60	3.0	2	1;5	2	n	0.25	1.0	3	2;0	3	n	0.85	5.5	1	5;6	1	y	ENSMUSG00000108621.2	Gm33989	chr7	lncRNA	predicted gene, 33989
novel_NIR_17692	chr7	39194504	39202652	+	39193928	39202652	A5SS	ENSMUST00000190789.3	novel	0.00	0	9	0	9	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.33	2	4	2	4	y	-	-	-	-	-	-	-	-	-	-	-	-	0.71	5	2	5	2	n	0.00	0	3	0	3	n	0.86	6	1	6	1	n	ENSMUSG00000108621.2	Gm33989	chr7	lncRNA	predicted gene, 33989
novel_NIR_17693	chr7	39194504	39202652	+	39202035	39202652	5pMXE	ENSMUST00000191302.2	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.14	1	6	1	6	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.45	5	6	5	6	y	0.00	0	1	0	1	n	0.67	6	3	6	3	y	ENSMUSG00000108621.2	Gm33989	chr7	lncRNA	predicted gene, 33989
novel_NIR_17694	chr7	39202035	39202648	+	39202035	39202652	A3SS	ENSMUST00000191302.2	novel	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	ENSMUSG00000108621.2	Gm33989	chr7	lncRNA	predicted gene, 33989
novel_NIR_17695	chr7	39202323	39202652	+	39193928	39202652	A5SS	ENSMUST00000190789.3	novel	0.00	0	9	0	9	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	4	0	4	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000108621.2	Gm33989	chr7	lncRNA	predicted gene, 33989
novel_NIR_17696	chr7	39202323	39202652	+	39202035	39202652	A5SS	ENSMUST00000191302.2	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.09	1	10	1	10	n	0.00	0	6	0	6	n	0.75	3	1	3	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.25	2	6	2	6	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000108621.2	Gm33989	chr7	lncRNA	predicted gene, 33989
novel_NIR_17697	chr7	41043279	41046289	+	41043444	41046289	A5SS	ENSMUST00000170929.2	novel	0.12	1	7	1	7	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.14	1	6	1	6	n	0.17	1	5	1	5	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.80	4	1	4	1	y	0.00	0	1	0	1	n	ENSMUSG00000091864.2	Gm17102	chr7	lncRNA	predicted gene 17102
novel_NIR_17698	chr7	41248893	41251172	+	41248824	41251172	A5SS	ENSMUST00000205721.2	novel	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000091474.3	2610021A01Rik	chr7	protein_coding	RIKEN cDNA 2610021A01 gene
novel_NIR_17699	chr7	41249131	41251172	+	41248824	41251172	A5SS	ENSMUST00000205721.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000091474.3	2610021A01Rik	chr7	protein_coding	RIKEN cDNA 2610021A01 gene
novel_NIR_17700	chr7	41251239	41252860	+	41248824	41252860	A5SS	ENSMUST00000205587.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000091474.3	2610021A01Rik	chr7	protein_coding	RIKEN cDNA 2610021A01 gene
novel_NIR_17701	chr7	41251239	41252860	+	41251239;41252421	41252302;41252860	ES	ENSMUST00000205721.2	novel	0.00	0	1.0	0	2;0	n	0.40	1	1.5	1	2;1	n	0.00	0	1.0	0	0;2	n	0.00	0	2.5	0	3;2	n	0.46	3	3.5	3	2;5	y	0.00	0	0.5	0	1;0	n	0.00	0	0.5	0	0;1	n	-	-	-	-	-	-	0.00	0	1.0	0	1;1	n	0.00	0	0.5	0	0;1	n	0.00	0	1.0	0	2;0	n	-	-	-	-	-	-	ENSMUSG00000091474.3	2610021A01Rik	chr7	protein_coding	RIKEN cDNA 2610021A01 gene
novel_NIR_17702	chr7	42139700	42145985	-	42139700	42150782	A5SS	ENSMUST00000174407.3	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	ENSMUSG00000092416.3	Zfp141	chr7	protein_coding	zinc finger protein 141
novel_NIR_17703	chr7	42139700	42145985	-	42139700	42155034	A5SS	ENSMUST00000173489.3	novel	0.25	2	6	2	6	y	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	ENSMUSG00000092416.3	Zfp141	chr7	protein_coding	zinc finger protein 141
novel_NIR_17704	chr7	42146092	42150782	-	42139700	42150782	A3SS	ENSMUST00000174407.3	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.33	2	4	2	4	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.10	1	9	1	9	n	0.25	1	3	1	3	n	0.00	0	6	0	6	n	ENSMUSG00000092416.3	Zfp141	chr7	protein_coding	zinc finger protein 141
novel_NIR_17705	chr7	42147363	42150782	-	42139700	42150782	A3SS	ENSMUST00000174407.3	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.15	2	11	2	11	y	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	ENSMUSG00000092416.3	Zfp141	chr7	protein_coding	zinc finger protein 141
novel_NIR_17706	chr7	42150849	42152298	-	42150849	42155034	A5SS	ENSMUST00000174407.3	novel	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.67	4	2	4	2	y	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.31	4	9	4	9	y	ENSMUSG00000092416.3	Zfp141	chr7	protein_coding	zinc finger protein 141
novel_NIR_17707	chr7	42150849	42152298	-	42150849;42151412	42151292;42152298	ES	ENSMUST00000173439.3	novel	-	-	-	-	-	-	1.00	3	0.0	3	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	1.00	4	0.0	4	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0.0	4	0;0	y	ENSMUSG00000092416.3	Zfp141	chr7	protein_coding	zinc finger protein 141
novel_NIR_17708	chr7	42152365	42154965	-	42152365	42155034	A5SS	ENSMUST00000173439.3	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	3	0	3	0	y	1.00	2	0	2	0	y	ENSMUSG00000092416.3	Zfp141	chr7	protein_coding	zinc finger protein 141
novel_NIR_17709	chr7	42338808	42342075	-	42314568	42342075	A3SS	ENSMUST00000107992.2	novel	0.14	1	6	1	6	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.20	2	8	2	8	y	0.60	3	2	3	2	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.10	1	9	1	9	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.17	1	5	1	5	n	0.00	0	1	0	1	n	ENSMUSG00000069727.6	Zfp975	chr7	protein_coding	zinc finger protein 975
novel_NIR_17710	chr7	42338808	42342075	-	42338808;42340500	42340357;42342075	ES	ENSMUST00000206356.2	novel	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	1.00	3	0.0	3	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	ENSMUSG00000069727.6	Zfp975	chr7	protein_coding	zinc finger protein 975
novel_NIR_17711	chr7	42945872	42950594	-	42945872;42947563	42947431;42950594	ES	ENSMUST00000012796.14	novel	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	0.00	0	1.0	0	2;0	n	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	0.00	0	1.0	0	2;0	n	1.00	2	0.0	2	0;0	y	0.67	1	0.5	1	1;0	n	ENSMUSG00000012640.17	Zfp715	chr7	protein_coding	zinc finger protein 715
novel_NIR_17712	chr7	42947563	42948005	-	42947563	42950594	A5SS	ENSMUST00000012796.14	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000012640.17	Zfp715	chr7	protein_coding	zinc finger protein 715
novel_NIR_17713	chr7	42950673	42951035	-	42950689	42951035	A3SS	ENSMUST00000012796.14	novel	0.25	5	15	5	15	y	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	25	0	25	n	0.00	0	17	0	17	n	0.00	0	18	0	18	n	0.00	0	2	0	2	n	0.00	0	13	0	13	n	0.00	0	24	0	24	n	0.00	0	19	0	19	n	0.00	0	29	0	29	n	ENSMUSG00000012640.17	Zfp715	chr7	protein_coding	zinc finger protein 715
novel_NIR_17714	chr7	42960609	42960702	-	42960609	42962418	A5SS	ENSMUST00000139061.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000012640.17	Zfp715	chr7	protein_coding	zinc finger protein 715
novel_NIR_17715	chr7	42960609	42960702	-	42960609	42962528	A5SS	ENSMUST00000012796.14	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.20	1	4	1	4	n	-	-	-	-	-	-	0.50	3	3	3	3	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000012640.17	Zfp715	chr7	protein_coding	zinc finger protein 715
novel_NIR_17716	chr7	43101923	43102226	+	43101923	43103942	A3SS	ENSMUST00000206286.2	novel	0.00	0	2	0	2	n	1.00	16	0	16	0	y	0.00	0	1	0	1	n	1.00	24	0	24	0	y	-	-	-	-	-	-	1.00	18	0	18	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.80	12	3	12	3	y	-	-	-	-	-	-	ENSMUSG00000004610.5	Etfb	chr7	protein_coding	electron transferring flavoprotein, beta polypeptide
novel_NIR_17717	chr7	43104004	43105539	+	43104004	43106994	A3SS	ENSMUST00000205363.2	novel	0.38	3	5	3	5	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	1.00	3	0	3	0	y	0.00	0	4	0	4	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	ENSMUSG00000004610.5	Etfb	chr7	protein_coding	electron transferring flavoprotein, beta polypeptide
novel_NIR_17718	chr7	43104004	43105539	+	43104004	43112561	A3SS	ENSMUST00000204680.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	4	0	4	n	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000107482.3	Etfbl	chr7	protein_coding	electron transferring flavoprotein, beta polypeptide like
novel_NIR_17719	chr7	43105941	43106994	+	43104004	43106994	A5SS	ENSMUST00000205363.2	novel	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	1.00	3	0	3	0	y	ENSMUSG00000004610.5	Etfb	chr7	protein_coding	electron transferring flavoprotein, beta polypeptide
novel_NIR_17720	chr7	43106061	43106661	+	43106061	43107100	A3SS	ENSMUST00000206411.2	novel	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.25	1	3	1	3	n	0.20	1	4	1	4	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000004610.5	Etfb	chr7	protein_coding	electron transferring flavoprotein, beta polypeptide
novel_NIR_17721	chr7	43106061	43106661	+	43106061	43112561	A3SS	ENSMUST00000203633.3	novel	1.00	2	0	2	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.67	2	1	2	1	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000107482.3	Etfbl	chr7	protein_coding	electron transferring flavoprotein, beta polypeptide like
novel_NIR_17722	chr7	43106061	43107074	+	43106061	43107100	A3SS	ENSMUST00000206411.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000004610.5	Etfb	chr7	protein_coding	electron transferring flavoprotein, beta polypeptide
novel_NIR_17723	chr7	43106061	43107074	+	43106061	43112561	A3SS	ENSMUST00000203633.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000107482.3	Etfbl	chr7	protein_coding	electron transferring flavoprotein, beta polypeptide like
novel_NIR_17724	chr7	43106061;43107149	43106661;43112561	+	43106061	43112561	cassetteExon	ENSMUST00000203633.3	novel	1.00	8.5	0	2;15	0	y	1.00	1.0	0	2;0	0	n	1.00	0.5	0	1;0	0	n	-	-	-	-	-	-	0.93	12.5	1	2;23	1	y	0.00	0.0	1	0;0	1	n	0.20	0.5	2	1;0	2	n	0.33	0.5	1	1;0	1	n	1.00	0.5	0	1;0	0	n	1.00	1.0	0	2;0	0	n	1.00	0.5	0	1;0	0	n	1.00	0.5	0	1;0	0	n	ENSMUSG00000107482.3	Etfbl	chr7	protein_coding	electron transferring flavoprotein, beta polypeptide like
novel_NIR_17725	chr7	43107149	43112561	+	43104004	43112561	A5SS	ENSMUST00000204680.2	novel	1.00	15	0	15	0	y	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.96	23	1	23	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000107482.3	Etfbl	chr7	protein_coding	electron transferring flavoprotein, beta polypeptide like
novel_NIR_17726	chr7	43181740	43182087	-	43181740	43182026	A5SS	ENSMUST00000205503.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000004609.12	Cd33	chr7	protein_coding	CD33 antigen
novel_NIR_17727	chr7	43181740	43182087	-	43181740	43182255	A5SS	ENSMUST00000206977.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000004609.12	Cd33	chr7	protein_coding	CD33 antigen
novel_NIR_17728	chr7	43217167	43222297	+	43217167	43222013	A3SS	ENSMUST00000107972.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000056592.15	Zfp658	chr7	protein_coding	zinc finger protein 658
novel_NIR_17729	chr7	43235896	43238679	+	43235904	43238679	A5SS	ENSMUST00000058104.8	novel	0.29	2	5	2	5	y	0.00	0	1	0	1	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000030469.11	Zfp719	chr7	protein_coding	zinc finger protein 719
novel_NIR_17730	chr7	43301113	43302905	-	43301113	43305516	A5SS	ENSMUST00000032667.10	novel	0.00	0	4	0	4	n	0.06	1	17	1	17	n	0.28	5	13	5	13	n	0.00	0	6	0	6	n	0.07	2	26	2	26	n	0.17	2	10	2	10	y	0.33	4	8	4	8	n	0.54	7	6	7	6	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	ENSMUSG00000030474.10	Siglece	chr7	protein_coding	sialic acid binding Ig-like lectin E
novel_NIR_17731	chr7	43301113	43302905	-	43301113	43305950	A5SS	ENSMUST00000206421.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.83	5	1	5	1	y	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.67	2	1	2	1	y	1.00	4	0	4	0	y	1.00	7	0	7	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030474.10	Siglece	chr7	protein_coding	sialic acid binding Ig-like lectin E
novel_NIR_17732	chr7	43301113;43302956	43302905;43305516	-	43301113	43305516	cassetteExon	ENSMUST00000032667.10	novel	0.27	1.5	4	0;3	4	n	0.11	2.0	17	1;3	17	n	0.37	7.5	13	5;10	13	y	0.00	0.0	6	0;0	6	n	0.05	1.5	26	2;1	26	n	0.09	1.0	10	2;0	10	n	0.33	4.0	8	4;4	8	y	0.50	6.0	6	7;5	6	y	0.56	2.5	2	1;4	2	n	0.00	0.0	3	0;0	3	n	0.06	0.5	8	0;1	8	n	0.00	0.0	4	0;0	4	n	ENSMUSG00000030474.10	Siglece	chr7	protein_coding	sialic acid binding Ig-like lectin E
novel_NIR_17733	chr7	43302956	43305516	-	43301113	43305516	A3SS	ENSMUST00000032667.10	novel	0.43	3	4	3	4	y	0.15	3	17	3	17	n	0.43	10	13	10	13	n	0.00	0	6	0	6	n	0.04	1	26	1	26	n	0.00	0	10	0	10	n	0.33	4	8	4	8	n	0.45	5	6	5	6	n	0.67	4	2	4	2	n	0.00	0	3	0	3	n	0.11	1	8	1	8	n	0.00	0	4	0	4	n	ENSMUSG00000030474.10	Siglece	chr7	protein_coding	sialic acid binding Ig-like lectin E
novel_NIR_17734	chr7	43308444	43309118	-	43308444	43308634	5pMXE	ENSMUST00000206421.2	novel	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.12	3	23	3	23	n	0.00	0	6	0	6	n	0.16	4	21	4	21	y	0.20	3	12	3	12	y	0.05	1	21	1	21	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.12	1	7	1	7	n	ENSMUSG00000030474.10	Siglece	chr7	protein_coding	sialic acid binding Ig-like lectin E
novel_NIR_17735	chr7	43308444	43309118	-	43308444;43308912	43308634;43309118	ES	ENSMUST00000032667.10	novel	0.00	0	11.5	0	12;11	n	0.00	0	11.0	0	14;8	n	0.15	3	17.5	3	23;12	y	0.00	0	5.5	0	6;5	n	0.17	4	19.0	4	21;17	y	0.22	3	10.5	3	12;9	y	0.06	1	15.0	1	21;9	n	0.00	0	6.5	0	6;7	n	0.00	0	6.0	0	11;1	n	0.00	0	4.0	0	4;4	n	0.12	1	7.5	1	7;8	n	0.17	1	5.0	1	7;3	n	ENSMUSG00000030474.10	Siglece	chr7	protein_coding	sialic acid binding Ig-like lectin E
novel_NIR_17736	chr7	43859174	43860036	+	43859174	43860079	A3SS	ENSMUST00000077354.5	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.15	2	11	2	11	y	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	21	0	21	n	ENSMUSG00000066513.5	Klk1b4	chr7	protein_coding	kallikrein 1-related pepidase b4
novel_NIR_17737	chr7	43896471	43896662	+	43896232	43896662	A5SS	ENSMUST00000188111.7	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000045411.17	2410002F23Rik	chr7	protein_coding	RIKEN cDNA 2410002F23 gene
novel_NIR_17738	chr7	43896471	43896662	+	43896247	43896662	A5SS	ENSMUST00000084937.11	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000045411.17	2410002F23Rik	chr7	protein_coding	RIKEN cDNA 2410002F23 gene
novel_NIR_17739	chr7	44034373	44034645	+	44034373	44034637	A3SS	ENSMUST00000132399.8	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.80	4	1	4	1	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000030731.14	Syt3	chr7	protein_coding	synaptotagmin III
novel_NIR_17740	chr7	44034373	44034645	+	44034373	44035353	A3SS	ENSMUST00000118831.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.80	4	1	4	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.33	1	2	1	2	n	ENSMUSG00000030731.14	Syt3	chr7	protein_coding	synaptotagmin III
novel_NIR_17741	chr7	44034373	44034645	+	44034373	44035375	A3SS	ENSMUST00000120262.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	4	2	4	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000030731.14	Syt3	chr7	protein_coding	synaptotagmin III
novel_NIR_17742	chr7	44034373	44034645	+	44034373	44035380	A3SS	ENSMUST00000118962.8	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.67	4	2	4	2	y	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.15	2	11	2	11	y	0.00	0	4	0	4	n	0.12	1	7	1	7	n	ENSMUSG00000030731.14	Syt3	chr7	protein_coding	synaptotagmin III
novel_NIR_17743	chr7	44034373;44034720	44034645;44035375	+	44034373	44035375	cassetteExon	ENSMUST00000120262.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0.0	1	0;0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.60	3.0	2	4;2	2	y	-	-	-	-	-	-	0.00	0.0	1	0;0	1	n	1.00	1.0	0	2;0	0	n	-	-	-	-	-	-	0.67	2.0	1	1;3	1	n	ENSMUSG00000030731.14	Syt3	chr7	protein_coding	synaptotagmin III
novel_NIR_17744	chr7	44114931	44115519	+	44114959	44115519	A5SS	ENSMUST00000152902.8	novel	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.12	1	7	1	7	n	0.15	2	11	2	11	y	0.00	0	17	0	17	n	0.00	0	5	0	5	n	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.07	1	14	1	14	n	0.00	0	33	0	33	n	0.07	1	13	1	13	n	0.18	2	9	2	9	y	ENSMUSG00000038704.13	Aspdh	chr7	protein_coding	aspartate dehydrogenase domain containing
novel_NIR_17745	chr7	44116237	44117067	+	44116237	44116603	3pMXE	ENSMUST00000135624.2	novel	0.00	0	19	0	19	n	0.14	5	30	5	30	n	0.00	0	7	0	7	n	0.13	2	13	2	13	n	0.09	2	20	2	20	n	0.00	0	7	0	7	n	0.00	0	16	0	16	n	0.11	1	8	1	8	n	0.27	3	8	3	8	y	0.22	5	18	5	18	y	0.00	0	18	0	18	n	0.00	0	12	0	12	n	ENSMUSG00000038704.13	Aspdh	chr7	protein_coding	aspartate dehydrogenase domain containing
novel_NIR_17746	chr7	44116269	44116603	+	44116237	44116603	A5SS	ENSMUST00000135624.2	novel	0.55	23	19	23	19	y	0.50	30	30	30	30	y	0.30	3	7	3	7	y	0.57	17	13	17	13	y	0.51	21	20	21	20	y	0.50	7	7	7	7	y	0.48	15	16	15	16	y	0.53	9	8	9	8	y	0.56	10	8	10	8	y	0.58	25	18	25	18	y	0.55	22	18	22	18	y	0.56	15	12	15	12	y	ENSMUSG00000038704.13	Aspdh	chr7	protein_coding	aspartate dehydrogenase domain containing
novel_NIR_17747	chr7	44119961	44120658	+	44119961	44120839	A3SS	ENSMUST00000206887.2	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.25	1	3	1	3	n	ENSMUSG00000038695.14	Josd2	chr7	protein_coding	Josephin domain containing 2
novel_NIR_17748	chr7	44120411	44120662	+	44120411	44120537	3pMXE	ENSMUST00000136609.8	novel	0.00	0	9	0	9	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.67	2	1	2	1	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000038695.14	Josd2	chr7	protein_coding	Josephin domain containing 2
novel_NIR_17749	chr7	44120411	44120662	+	44120411	44120658	A3SS	ENSMUST00000139097.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000038695.14	Josd2	chr7	protein_coding	Josephin domain containing 2
novel_NIR_17750	chr7	44188926	44189874	-	44188926	44189949	A5SS	ENSMUST00000049343.15	novel	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.33	3	6	3	6	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	ENSMUSG00000038644.15	Pold1	chr7	protein_coding	polymerase (DNA directed), delta 1, catalytic subunit
novel_NIR_17751	chr7	44189434	44189949	-	44188926	44189949	A3SS	ENSMUST00000049343.15	novel	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.29	2	5	2	5	y	0.00	0	5	0	5	n	ENSMUSG00000038644.15	Pold1	chr7	protein_coding	polymerase (DNA directed), delta 1, catalytic subunit
novel_NIR_17752	chr7	44201658	44201931	-	44201660	44201931	A3SS	ENSMUST00000107911.8	novel	0.00	0	17	0	17	n	0.00	0	19	0	19	n	0.00	0	30	0	30	n	0.00	0	31	0	31	n	0.00	0	39	0	39	n	0.22	4	14	4	14	y	0.00	0	36	0	36	n	0.00	0	24	0	24	n	0.00	0	25	0	25	n	0.00	0	36	0	36	n	0.00	0	24	0	24	n	0.00	0	26	0	26	n	ENSMUSG00000060601.14	Nr1h2	chr7	protein_coding	nuclear receptor subfamily 1, group H, member 2
novel_NIR_17753	chr7	44201658	44201931	-	44201767	44201931	A3SS	ENSMUST00000207550.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	4	0	4	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000060601.14	Nr1h2	chr7	protein_coding	nuclear receptor subfamily 1, group H, member 2
novel_NIR_17754	chr7	44201658	44201931	-	44201788	44201931	A3SS	ENSMUST00000141901.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	4	0	4	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000060601.14	Nr1h2	chr7	protein_coding	nuclear receptor subfamily 1, group H, member 2
novel_NIR_17755	chr7	44247043	44247805	+	44245692	44247805	A5SS	ENSMUST00000207493.2	novel	0.33	2	4	2	4	y	0.25	1	3	1	3	n	0.83	5	1	5	1	y	0.00	0	3	0	3	n	0.09	1	10	1	10	n	0.40	2	3	2	3	y	0.29	2	5	2	5	y	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000062785.15	Kcnc3	chr7	protein_coding	potassium voltage gated channel, Shaw-related subfamily, member 3
novel_NIR_17756	chr7	44247043	44247805	+	44247043	44247808	A3SS	ENSMUST00000209177.2	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	5	0	5	0	y	0.00	0	1	0	1	n	0.50	1	1	1	1	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000062785.15	Kcnc3	chr7	protein_coding	potassium voltage gated channel, Shaw-related subfamily, member 3
novel_NIR_17757	chr7	4434633	4441438	-	4434633	4437993	A5SS&ES	ENSMUST00000008579.14	novel	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	39	0	39	n	0.00	0	7	0	7	n	0.00	0	20	0	20	n	0.00	0	16	0	16	n	0.00	0	17	0	17	n	0.15	2	11	2	11	y	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	ENSMUSG00000008435.16	Rdh13	chr7	protein_coding	retinol dehydrogenase 13 (all-trans and 9-cis)
novel_NIR_17758	chr7	4434633	4441438	-	4434633	4445593	A5SS	ENSMUST00000119485.8	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000008435.16	Rdh13	chr7	protein_coding	retinol dehydrogenase 13 (all-trans and 9-cis)
novel_NIR_17759	chr7	4438095	4445593	-	4434633	4445593	A3SS	ENSMUST00000119485.8	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.30	3	7	3	7	y	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000008435.16	Rdh13	chr7	protein_coding	retinol dehydrogenase 13 (all-trans and 9-cis)
novel_NIR_17760	chr7	44400431	44401539	+	44398821	44401539	A5SS	ENSMUST00000125705.9	novel	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	-	-	-	-	-	-	ENSMUSG00000002205.17	Vrk3	chr7	protein_coding	vaccinia related kinase 3
novel_NIR_17761	chr7	44407319	44408610	+	44407319	44408449	A3SS	ENSMUST00000136069.9	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000002205.17	Vrk3	chr7	protein_coding	vaccinia related kinase 3
novel_NIR_17762	chr7	44407319	44408610	+	44407319	44408466	A3SS	ENSMUST00000135783.2	novel	0.33	1	2	1	2	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	ENSMUSG00000002205.17	Vrk3	chr7	protein_coding	vaccinia related kinase 3
novel_NIR_17763	chr7	44407319	44408610	+	44407319	44410302	A3SS	ENSMUST00000144515.9	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000002205.17	Vrk3	chr7	protein_coding	vaccinia related kinase 3
novel_NIR_17764	chr7	44407319	44409158	+	44407319	44408449	3pMXE	ENSMUST00000136069.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000002205.17	Vrk3	chr7	protein_coding	vaccinia related kinase 3
novel_NIR_17765	chr7	44407319	44409158	+	44407319	44408466	3pMXE	ENSMUST00000135783.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000002205.17	Vrk3	chr7	protein_coding	vaccinia related kinase 3
novel_NIR_17766	chr7	44407319	44409158	+	44407319	44410302	A3SS	ENSMUST00000144515.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000002205.17	Vrk3	chr7	protein_coding	vaccinia related kinase 3
novel_NIR_17767	chr7	44407319	44412415	+	44407319	44408449	3pMXE	ENSMUST00000136069.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000002205.17	Vrk3	chr7	protein_coding	vaccinia related kinase 3
novel_NIR_17768	chr7	44407319	44412415	+	44407319	44408466	3pMXE	ENSMUST00000135783.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000002205.17	Vrk3	chr7	protein_coding	vaccinia related kinase 3
novel_NIR_17769	chr7	44464706	44465317	-	44464706	44464906	5pMXE	ENSMUST00000107893.9	novel	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.17	2	10	2	10	y	0.00	0	2	0	2	n	0.60	3	2	3	2	y	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.25	1	3	1	3	n	ENSMUSG00000038539.16	Atf5	chr7	protein_coding	activating transcription factor 5
novel_NIR_17770	chr7	4448198	4448446	-	4447320	4448446	A3SS	ENSMUST00000119485.8	novel	0.00	0	8	0	8	n	0.11	1	8	1	8	n	0.25	6	18	6	18	y	0.00	0	9	0	9	n	0.13	2	13	2	13	n	0.00	0	8	0	8	n	0.12	3	21	3	21	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.18	2	9	2	9	y	0.00	0	9	0	9	n	0.00	0	8	0	8	n	ENSMUSG00000008435.16	Rdh13	chr7	protein_coding	retinol dehydrogenase 13 (all-trans and 9-cis)
novel_NIR_17771	chr7	4448198	4448446	-	4448121	4448446	A3SS	ENSMUST00000128299.3	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.75	6	2	6	2	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000008435.16	Rdh13	chr7	protein_coding	retinol dehydrogenase 13 (all-trans and 9-cis)
novel_NIR_17772	chr7	4449650	4452488	-	4449650	4474040	A5SS	ENSMUST00000171665.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000091177.3	Gm15494	chr7	lncRNA	predicted gene 15494
novel_NIR_17773	chr7	44499688	44501995	+	44499113	44501995	A5SS	ENSMUST00000150335.2	novel	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.29	2	5	2	5	y	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
novel_NIR_17774	chr7	44499688	44501995	+	44499679	44501995	A5SS	ENSMUST00000208384.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
novel_NIR_17775	chr7	44499688	44501995	+	44499720	44501995	A5SS	ENSMUST00000107880.9	novel	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.40	2	3	2	3	y	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
novel_NIR_17776	chr7	44499688	44501995	+	44500029	44501995	5pMXE	ENSMUST00000207223.2	novel	0.00	0	6	0	6	n	-	-	-	-	-	-	-	-	-	-	-	-	0.22	2	7	2	7	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	-	-	-	-	-	-	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
novel_NIR_17777	chr7	44499700;44501317	44500979;44501995	+	44499700	44501995	cassetteExon	ENSMUST00000141311.8	novel	0.18	3.0	14	2;4	14	y	0.04	0.5	12	0;1	12	n	0.09	2.0	21	0;4	21	n	0.14	2.5	16	0;5	16	n	0.20	2.5	10	0;5	10	n	0.05	0.5	9	0;1	9	n	0.22	4.0	14	0;8	14	n	1.00	0.5	0	0;1	0	n	0.12	1.5	11	0;3	11	n	0.20	3.0	12	0;6	12	n	0.13	2.0	13	0;4	13	n	0.00	0.0	7	0;0	7	n	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
novel_NIR_17778	chr7	44499700;44501317	44501248;44501995	+	44499700	44501995	cassetteExon	ENSMUST00000141311.8	novel	0.12	2.0	14	0;4	14	n	0.11	1.5	12	2;1	12	n	0.09	2.0	21	0;4	21	n	0.14	2.5	16	0;5	16	n	0.26	3.5	10	2;5	10	y	0.05	0.5	9	0;1	9	n	0.22	4.0	14	0;8	14	n	1.00	0.5	0	0;1	0	n	0.12	1.5	11	0;3	11	n	0.20	3.0	12	0;6	12	n	0.13	2.0	13	0;4	13	n	0.07	0.5	7	1;0	7	n	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
novel_NIR_17779	chr7	44499858;44501317	44501248;44501995	+	44499858	44501995	cassetteExon	ENSMUST00000136232.2	novel	0.14	2.0	12	0;4	12	n	0.11	0.5	4	0;1	4	n	0.38	2.5	4	1;4	4	n	0.20	3.0	12	1;5	12	n	0.19	2.5	11	0;5	11	n	0.08	0.5	6	0;1	6	n	0.36	4.0	7	0;8	7	n	0.20	0.5	2	0;1	2	n	0.20	1.5	6	0;3	6	n	0.47	3.5	4	1;6	4	n	0.75	3.0	1	2;4	1	y	0.00	0.0	13	0;0	13	n	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
novel_NIR_17780	chr7	44501317	44501995	+	44498772	44501995	A5SS	ENSMUST00000107885.8	novel	0.14	4	24	4	24	n	0.05	1	20	1	20	n	0.13	4	27	4	27	n	0.22	5	18	5	18	y	0.15	5	28	5	28	y	0.08	1	12	1	12	n	0.22	8	29	8	29	y	0.08	1	11	1	11	n	0.20	3	12	3	12	y	0.22	6	21	6	21	y	0.20	4	16	4	16	y	0.00	0	20	0	20	n	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
novel_NIR_17781	chr7	44501317	44501995	+	44499113	44501995	A5SS	ENSMUST00000150335.2	novel	0.57	4	3	4	3	y	0.14	1	6	1	6	n	0.44	4	5	4	5	y	0.50	5	5	5	5	y	0.38	5	8	5	8	y	0.08	1	11	1	11	n	0.67	8	4	8	4	y	0.20	1	4	1	4	n	0.43	3	4	3	4	y	0.50	6	6	6	6	y	0.50	4	4	4	4	y	0.00	0	9	0	9	n	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
novel_NIR_17782	chr7	44501317	44501995	+	44499430	44501995	A5SS	ENSMUST00000152091.8	novel	0.24	4	13	4	13	y	0.08	1	11	1	11	n	0.27	4	11	4	11	y	0.28	5	13	5	13	y	0.25	5	15	5	15	y	0.08	1	12	1	12	n	0.24	8	26	8	26	y	0.11	1	8	1	8	n	0.30	3	7	3	7	y	0.32	6	13	6	13	n	0.27	4	11	4	11	y	0.00	0	13	0	13	n	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
novel_NIR_17783	chr7	44501317	44501995	+	44499679	44501995	A5SS	ENSMUST00000208384.2	novel	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	5	0	5	0	y	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	8	0	8	0	y	0.50	1	1	1	1	n	1.00	3	0	3	0	y	1.00	6	0	6	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
novel_NIR_17784	chr7	44501317	44501995	+	44499700	44501995	A5SS	ENSMUST00000141311.8	novel	0.22	4	14	4	14	n	0.08	1	12	1	12	n	0.16	4	21	4	21	y	0.24	5	16	5	16	y	0.33	5	10	5	10	n	0.10	1	9	1	9	n	0.36	8	14	8	14	y	1.00	1	0	1	0	n	0.21	3	11	3	11	y	0.33	6	12	6	12	y	0.24	4	13	4	13	y	0.00	0	7	0	7	n	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
novel_NIR_17785	chr7	44501317	44501995	+	44499720	44501995	A5SS	ENSMUST00000107880.9	novel	0.44	4	5	4	5	y	1.00	1	0	1	0	n	0.50	4	4	4	4	y	0.62	5	3	5	3	y	0.62	5	3	5	3	y	1.00	1	0	1	0	n	1.00	8	0	8	0	y	0.50	1	1	1	1	n	0.50	3	3	3	3	y	0.55	6	5	6	5	y	0.40	4	6	4	6	y	0.00	0	3	0	3	n	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
novel_NIR_17786	chr7	44501317	44501995	+	44499858	44501995	A5SS	ENSMUST00000136232.2	novel	0.25	4	12	4	12	y	0.20	1	4	1	4	n	0.50	4	4	4	4	n	0.29	5	12	5	12	n	0.31	5	11	5	11	y	0.14	1	6	1	6	n	0.53	8	7	8	7	y	0.33	1	2	1	2	n	0.33	3	6	3	6	y	0.60	6	4	6	4	n	0.80	4	1	4	1	n	0.00	0	13	0	13	n	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
novel_NIR_17787	chr7	44501317	44501995	+	44500029	44501995	A5SS	ENSMUST00000207223.2	novel	0.40	4	6	4	6	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	0.42	5	7	5	7	y	0.62	5	3	5	3	y	1.00	1	0	1	0	n	0.73	8	3	8	3	n	0.50	1	1	1	1	n	0.50	3	3	3	3	y	0.50	6	6	6	6	y	0.44	4	5	4	5	y	-	-	-	-	-	-	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
novel_NIR_17788	chr7	44501663	44501995	+	44499113	44501995	A5SS	ENSMUST00000150335.2	novel	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.38	3	5	3	5	y	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.08	1	11	1	11	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
novel_NIR_17789	chr7	44501663	44501995	+	44499430	44501995	A5SS	ENSMUST00000152091.8	novel	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.21	3	11	3	11	y	0.00	0	13	0	13	n	0.00	0	15	0	15	n	0.08	1	12	1	12	n	0.00	0	26	0	26	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
novel_NIR_17790	chr7	44501663	44501995	+	44499679	44501995	A5SS	ENSMUST00000208384.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
novel_NIR_17791	chr7	44501663	44501995	+	44499720	44501995	A5SS	ENSMUST00000107880.9	novel	0.00	0	5	0	5	n	-	-	-	-	-	-	0.43	3	4	3	4	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
novel_NIR_17792	chr7	44501663	44501995	+	44500029	44501995	A5SS	ENSMUST00000207223.2	novel	0.00	0	6	0	6	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	7	0	7	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	-	-	-	-	-	-	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
novel_NIR_17793	chr7	44506978	44508001	+	44506978	44507526	A3SS&ES	ENSMUST00000155050.5	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000002963.18	Pnkp	chr7	protein_coding	polynucleotide kinase 3'- phosphatase
novel_NIR_17794	chr7	44506978	44508001	+	44506978	44507877	A3SS	ENSMUST00000139003.8	novel	0.38	3	5	3	5	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.33	1	2	1	2	n	ENSMUSG00000002963.18	Pnkp	chr7	protein_coding	polynucleotide kinase 3'- phosphatase
novel_NIR_17795	chr7	44509369	44509480	+	44509369	44509784	A3SS	ENSMUST00000145850.8	novel	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.17	2	10	2	10	y	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	ENSMUSG00000002963.18	Pnkp	chr7	protein_coding	polynucleotide kinase 3'- phosphatase
novel_NIR_17796	chr7	44509369;44509855	44509480;44510413	+	44509369	44510413	cassetteExon	ENSMUST00000124168.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1.0	0	0;2	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1.5	0	0;3	0	n	1.00	2.0	0	2;2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000002963.18	Pnkp	chr7	protein_coding	polynucleotide kinase 3'- phosphatase
novel_NIR_17797	chr7	44509855	44510413	+	44509369	44510413	A5SS	ENSMUST00000124168.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000002963.18	Pnkp	chr7	protein_coding	polynucleotide kinase 3'- phosphatase
novel_NIR_17798	chr7	44510663	44510893	+	44510663	44510924	A3SS	ENSMUST00000208385.2	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000002963.18	Pnkp	chr7	protein_coding	polynucleotide kinase 3'- phosphatase
novel_NIR_17799	chr7	44511851	44512986	+	44511851	44511927	3pMXE	ENSMUST00000200892.2	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	1.00	3	0	3	0	y	ENSMUSG00000002963.18	Pnkp	chr7	protein_coding	polynucleotide kinase 3'- phosphatase
novel_NIR_17800	chr7	44511851	44512986	+	44511851	44511993	3pMXE	ENSMUST00000202646.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000002963.18	Pnkp	chr7	protein_coding	polynucleotide kinase 3'- phosphatase
novel_NIR_17801	chr7	44528933	44529351	-	44527714	44529351	A3SS	ENSMUST00000208253.2	novel	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.38	5	8	5	8	y	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.00	0	11	0	11	n	ENSMUSG00000002968.10	Med25	chr7	protein_coding	mediator complex subunit 25
novel_NIR_17802	chr7	44535694	44539899	-	44535694	44538711	A5SS&ES	ENSMUST00000207654.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000002968.10	Med25	chr7	protein_coding	mediator complex subunit 25
novel_NIR_17803	chr7	44535694	44539899	-	44535694	44541523	A5SS	ENSMUST00000207788.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000002968.10	Med25	chr7	protein_coding	mediator complex subunit 25
novel_NIR_17804	chr7	44548810	44555129	+	44548810	44550672	3pMXE	ENSMUST00000208291.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000011658.17	Fuz	chr7	protein_coding	fuzzy planar cell polarity protein
novel_NIR_17805	chr7	44548810	44555129	+	44548810	44550795	3pMXE	ENSMUST00000207426.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000011658.17	Fuz	chr7	protein_coding	fuzzy planar cell polarity protein
novel_NIR_17806	chr7	44633299	44633500	-	44633299	44633504	A5SS	ENSMUST00000207522.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000109324.3	Prmt1	chr7	protein_coding	protein arginine N-methyltransferase 1
novel_NIR_17807	chr7	44633557	44635555	-	44633557	44635707	A5SS	ENSMUST00000107843.11	novel	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	ENSMUSG00000109324.3	Prmt1	chr7	protein_coding	protein arginine N-methyltransferase 1
novel_NIR_17808	chr7	44640557	44640801	+	44636794	44640801	A5SS	ENSMUST00000141011.2	novel	0.12	1	7	1	7	n	0.12	1	7	1	7	n	0.00	0	7	0	7	n	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.22	2	7	2	7	n	0.60	3	2	3	2	n	0.12	1	7	1	7	n	0.00	0	8	0	8	n	0.25	2	6	2	6	y	0.08	1	11	1	11	n	ENSMUSG00000087138.2	Gm15545	chr7	lncRNA	predicted gene 15545
novel_NIR_17809	chr7	44640856	44641447	+	44636794	44641447	A5SS	ENSMUST00000152595.2	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000087138.2	Gm15545	chr7	lncRNA	predicted gene 15545
novel_NIR_17810	chr7	44640905	44641055	+	44640905	44641018	A3SS	ENSMUST00000141011.2	novel	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	ENSMUSG00000087138.2	Gm15545	chr7	lncRNA	predicted gene 15545
novel_NIR_17811	chr7	44640905	44641447	+	44636794	44641447	A5SS	ENSMUST00000152595.2	novel	-	-	-	-	-	-	0.43	3	4	3	4	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.80	4	1	4	1	y	ENSMUSG00000087138.2	Gm15545	chr7	lncRNA	predicted gene 15545
novel_NIR_17812	chr7	44640905	44641447	+	44640905	44641018	3pMXE	ENSMUST00000141011.2	novel	0.00	0	6	0	6	n	0.75	3	1	3	1	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.33	1	2	1	2	n	0.75	3	1	3	1	y	0.40	4	6	4	6	y	ENSMUSG00000087138.2	Gm15545	chr7	lncRNA	predicted gene 15545
novel_NIR_17813	chr7	44643508	44643604	-	44642455	44643604	A3SS	ENSMUST00000003290.12	novel	0.00	0	13	0	13	n	0.19	3	13	3	13	y	0.00	0	5	0	5	n	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	18	0	18	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	ENSMUSG00000003190.13	Bcl2l12	chr7	protein_coding	BCL2-like 12 (proline rich)
novel_NIR_17814	chr7	44647802	44648129	+	44647490	44648129	A5SS	ENSMUST00000209066.2	novel	0.06	2	31	2	31	n	0.12	1	7	1	7	n	0.12	1	7	1	7	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.11	1	8	1	8	n	0.09	1	10	1	10	n	0.00	0	9	0	9	n	0.14	2	12	2	12	n	0.00	0	5	0	5	n	0.30	3	7	3	7	y	0.00	0	6	0	6	n	ENSMUSG00000003184.16	Irf3	chr7	protein_coding	interferon regulatory factor 3
novel_NIR_17815	chr7	44663017	44664889	-	44663017	44663629	5pMXE	ENSMUST00000211735.2	novel	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.11	2	16	2	16	n	0.25	2	6	2	6	y	0.00	0	21	0	21	n	0.00	0	11	0	11	n	0.00	0	25	0	25	n	0.00	0	15	0	15	n	0.14	2	12	2	12	n	0.03	1	34	1	34	n	0.00	0	11	0	11	n	0.00	0	17	0	17	n	ENSMUSG00000038406.18	Scaf1	chr7	protein_coding	SR-related CTD-associated factor 1
novel_NIR_17816	chr7	44663017	44664889	-	44663017	44665504	A5SS	ENSMUST00000085383.11	novel	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.11	2	16	2	16	n	0.13	2	13	2	13	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.06	1	15	1	15	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	ENSMUSG00000038406.18	Scaf1	chr7	protein_coding	SR-related CTD-associated factor 1
novel_NIR_17817	chr7	44663017	44664889	-	44663017;44663759	44663629;44664889	ES	ENSMUST00000211680.2	novel	0.00	0	9.5	0	16;3	n	0.00	0	9.0	0	13;5	n	0.19	2	8.5	2	16;1	y	0.29	2	5.0	2	6;4	y	0.00	0	12.5	0	21;4	n	0.00	0	8.5	0	11;6	n	0.00	0	17.0	0	25;9	n	0.00	0	9.0	0	15;3	n	0.20	2	8.0	2	12;4	y	0.05	1	18.5	1	34;3	n	0.00	0	6.5	0	11;2	n	0.00	0	9.5	0	17;2	n	ENSMUSG00000038406.18	Scaf1	chr7	protein_coding	SR-related CTD-associated factor 1
novel_NIR_17818	chr7	44684444	44692776	-	44684419	44692776	A3SS	ENSMUST00000057293.8	novel	0.00	0	12	0	12	n	0.17	3	15	3	15	y	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.00	0	20	0	20	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	ENSMUSG00000046574.9	Prr12	chr7	protein_coding	proline rich 12
novel_NIR_17819	chr7	44711955	44722918	+	44711955	44722914	A3SS	ENSMUST00000107829.9	novel	0.00	0	47	0	47	n	0.00	0	25	0	25	n	0.02	1	54	1	54	n	0.08	4	44	4	44	n	0.02	1	49	1	49	n	0.17	3	15	3	15	y	0.00	0	51	0	51	n	0.00	0	20	0	20	n	0.03	1	39	1	39	n	0.00	0	45	0	45	n	0.04	2	55	2	55	n	0.03	1	31	1	31	n	ENSMUSG00000003421.14	Nosip	chr7	protein_coding	nitric oxide synthase interacting protein
novel_NIR_17820	chr7	44772382	44772602	-	44772382	44772620	A5SS	ENSMUST00000209838.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	8	0	8	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	8	0	8	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	7	0	7	n	ENSMUSG00000003429.12	Rps11	chr7	protein_coding	ribosomal protein S11
novel_NIR_17821	chr7	44775441	44775539	-	44775441	44776133	A5SS	ENSMUST00000211037.2	novel	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.17	2	10	2	10	y	0.00	0	16	0	16	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.00	0	15	0	15	n	ENSMUSG00000074129.15	Rpl13a	chr7	protein_coding	ribosomal protein L13A
novel_NIR_17822	chr7	44776516	44776635	-	44776516	44776920	A5SS	ENSMUST00000209927.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000074129.15	Rpl13a	chr7	protein_coding	ribosomal protein L13A
novel_NIR_17823	chr7	44776992	44777475	-	44776992	44777252	A5SS	ENSMUST00000209965.2	novel	0.00	0	2	0	2	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000074129.15	Rpl13a	chr7	protein_coding	ribosomal protein L13A
novel_NIR_17824	chr7	44776992	44777475	-	44776992	44781652	A5SS	ENSMUST00000209467.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000089989.11	Gm45713	chr7	protein_coding	predicted gene 45713
novel_NIR_17825	chr7	44776992	44777493	-	44776992	44777252	A5SS	ENSMUST00000209965.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	ENSMUSG00000074129.15	Rpl13a	chr7	protein_coding	ribosomal protein L13A
novel_NIR_17826	chr7	44776992	44777493	-	44776992	44781652	A5SS	ENSMUST00000209467.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	ENSMUSG00000089989.11	Gm45713	chr7	protein_coding	predicted gene 45713
novel_NIR_17827	chr7	44779418	44779688	-	44779418	44780826	A5SS	ENSMUST00000210175.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000110206.2	Flt3l	chr7	protein_coding	FMS-like tyrosine kinase 3 ligand
novel_NIR_17828	chr7	44779418	44779688	-	44779418	44781493	A5SS	ENSMUST00000211503.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000110206.2	Flt3l	chr7	protein_coding	FMS-like tyrosine kinase 3 ligand
novel_NIR_17829	chr7	44779418	44779688	-	44779418	44781652	A5SS	ENSMUST00000210832.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000110206.2	Flt3l	chr7	protein_coding	FMS-like tyrosine kinase 3 ligand
novel_NIR_17830	chr7	44781537	44781652	-	44776992	44781652	A3SS	ENSMUST00000209467.2	novel	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000089989.11	Gm45713	chr7	protein_coding	predicted gene 45713
novel_NIR_17831	chr7	44781537	44781652	-	44779418	44781652	A3SS	ENSMUST00000210832.2	novel	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000110206.2	Flt3l	chr7	protein_coding	FMS-like tyrosine kinase 3 ligand
novel_NIR_17832	chr7	44781537	44781652	-	44780855	44781652	A3SS	ENSMUST00000210818.2	novel	0.83	5	1	5	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	ENSMUSG00000110206.2	Flt3l	chr7	protein_coding	FMS-like tyrosine kinase 3 ligand
novel_NIR_17833	chr7	44781537	44781652	-	44781561	44781652	A3SS	ENSMUST00000211503.2	novel	0.26	5	14	5	14	y	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	18	0	18	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.11	1	8	1	8	n	0.00	0	13	0	13	n	0.00	0	16	0	16	n	0.11	1	8	1	8	n	0.00	0	25	0	25	n	ENSMUSG00000110206.2	Flt3l	chr7	protein_coding	FMS-like tyrosine kinase 3 ligand
novel_NIR_17834	chr7	44781836	44783332	-	44781836	44782847	A5SS&ES	ENSMUST00000210197.2	novel	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.22	2	7	2	7	y	ENSMUSG00000110206.2	Flt3l	chr7	protein_coding	FMS-like tyrosine kinase 3 ligand
novel_NIR_17835	chr7	44781836	44783332	-	44781836	44783322	A5SS	ENSMUST00000210818.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.33	2	4	2	4	y	ENSMUSG00000110206.2	Flt3l	chr7	protein_coding	FMS-like tyrosine kinase 3 ligand
novel_NIR_17836	chr7	44781836	44783332	-	44781836	44785442	A5SS	ENSMUST00000210832.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000110206.2	Flt3l	chr7	protein_coding	FMS-like tyrosine kinase 3 ligand
novel_NIR_17837	chr7	44784599	44785092	-	44784599	44785088	A5SS	ENSMUST00000209467.2	novel	0.28	5	13	5	13	y	0.17	2	10	2	10	y	0.00	0	17	0	17	n	0.00	0	22	0	22	n	0.09	2	21	2	21	n	0.00	0	7	0	7	n	0.06	2	29	2	29	n	0.00	0	14	0	14	n	0.00	0	20	0	20	n	0.00	0	42	0	42	n	0.00	0	32	0	32	n	0.03	1	34	1	34	n	ENSMUSG00000089989.11	Gm45713	chr7	protein_coding	predicted gene 45713
novel_NIR_17838	chr7	44785508	44785728	-	44785508	44785803	A5SS	ENSMUST00000211503.2	novel	0.50	2	2	2	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	4	2	4	2	y	0.00	0	3	0	3	n	ENSMUSG00000110206.2	Flt3l	chr7	protein_coding	FMS-like tyrosine kinase 3 ligand
novel_NIR_17839	chr7	44796917	44797149	-	44796945	44797149	A3SS	ENSMUST00000211362.2	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.10	1	9	1	9	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.25	1	3	1	3	n	0.40	4	6	4	6	y	-	-	-	-	-	-	0.56	5	4	5	4	y	ENSMUSG00000007833.16	Aldh16a1	chr7	protein_coding	aldehyde dehydrogenase 16 family, member A1
novel_NIR_17840	chr7	44803844	44804231	+	44803844	44804235	A3SS	ENSMUST00000211709.2	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000003423.16	Pih1d1	chr7	protein_coding	PIH1 domain containing 1
novel_NIR_17841	chr7	44803844	44804231	+	44803844	44805717	A3SS	ENSMUST00000209847.2	novel	0.29	2	5	2	5	y	0.25	1	3	1	3	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.50	1	1	1	1	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000003423.16	Pih1d1	chr7	protein_coding	PIH1 domain containing 1
novel_NIR_17842	chr7	44803964	44805717	+	44803844	44805717	A5SS	ENSMUST00000209847.2	novel	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	-	-	-	-	-	-	ENSMUSG00000003423.16	Pih1d1	chr7	protein_coding	PIH1 domain containing 1
novel_NIR_17843	chr7	44805269	44805717	+	44803844	44805717	A5SS	ENSMUST00000209847.2	novel	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000003423.16	Pih1d1	chr7	protein_coding	PIH1 domain containing 1
novel_NIR_17844	chr7	44805269	44805717	+	44805269	44805730	A3SS	ENSMUST00000209954.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000003423.16	Pih1d1	chr7	protein_coding	PIH1 domain containing 1
novel_NIR_17845	chr7	44886708	44887928	-	44886708	44887924	A5SS	ENSMUST00000098461.10	novel	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.22	2	7	2	7	y	0.00	0	7	0	7	n	ENSMUSG00000030798.16	Cd37	chr7	protein_coding	CD37 antigen
novel_NIR_17846	chr7	44914219	44917439	+	44910738	44917439	A5SS	ENSMUST00000213347.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000094152.6	Slc6a16	chr7	protein_coding	solute carrier family 6, member 16
novel_NIR_17847	chr7	44977018	44977145	-	44976876	44977145	A3SS	ENSMUST00000042194.10	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038260.11	Trpm4	chr7	protein_coding	transient receptor potential cation channel, subfamily M, member 4
novel_NIR_17848	chr7	45030242	45030403	-	45030242	45031249	A5SS	ENSMUST00000211290.2	novel	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.25	1	3	1	3	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	ENSMUSG00000063511.12	Snrnp70	chr7	protein_coding	small nuclear ribonucleoprotein 70 (U1)
novel_NIR_17849	chr7	45030242	45030403	-	45030242	45032549	A5SS	ENSMUST00000209993.2	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.25	1	3	1	3	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	ENSMUSG00000063511.12	Snrnp70	chr7	protein_coding	small nuclear ribonucleoprotein 70 (U1)
novel_NIR_17850	chr7	45030242	45032537	-	45030242	45031249	A5SS	ENSMUST00000211290.2	novel	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.11	1	8	1	8	n	0.25	2	6	2	6	y	0.11	1	8	1	8	n	ENSMUSG00000063511.12	Snrnp70	chr7	protein_coding	small nuclear ribonucleoprotein 70 (U1)
novel_NIR_17851	chr7	45030242	45032537	-	45030242	45032549	A5SS	ENSMUST00000209993.2	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.33	2	4	2	4	y	0.17	1	5	1	5	n	ENSMUSG00000063511.12	Snrnp70	chr7	protein_coding	small nuclear ribonucleoprotein 70 (U1)
novel_NIR_17852	chr7	45108051	45108508	-	45108105	45108508	A3SS	ENSMUST00000210106.2	novel	0.00	0	31	0	31	n	0.00	0	28	0	28	n	0.00	0	24	0	24	n	0.85	104	19	104	19	y	0.00	0	29	0	29	n	0.00	0	9	0	9	n	0.00	0	37	0	37	n	0.00	0	8	0	8	n	0.00	0	30	0	30	n	0.72	93	37	93	37	y	0.00	0	32	0	32	n	0.00	0	38	0	38	n	ENSMUSG00000050708.17	Ftl1	chr7	protein_coding	ferritin light polypeptide 1
novel_NIR_17853	chr7	45108081	45108508	-	45108105	45108508	A3SS	ENSMUST00000210106.2	novel	0.00	0	31	0	31	n	0.00	0	28	0	28	n	0.91	258	24	258	24	y	0.94	319	19	319	19	y	0.94	429	29	429	29	y	0.00	0	9	0	9	n	0.00	0	37	0	37	n	0.00	0	8	0	8	n	0.00	0	30	0	30	n	0.00	0	37	0	37	n	0.00	0	32	0	32	n	0.00	0	38	0	38	n	ENSMUSG00000050708.17	Ftl1	chr7	protein_coding	ferritin light polypeptide 1
novel_NIR_17854	chr7	45108654	45109080	-	45108654	45108748	5pMXE	ENSMUST00000210375.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.50	4	4	4	4	y	0.00	0	4	0	4	n	-	-	-	-	-	-	ENSMUSG00000050708.17	Ftl1	chr7	protein_coding	ferritin light polypeptide 1
novel_NIR_17855	chr7	45128557	45136165	-	45128557	45129032	5pMXE	ENSMUST00000209450.2	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	7	0	7	0	y	1.00	7	0	7	0	y	1.00	1	0	1	0	n	1.00	11	0	11	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	4	0	4	0	y	1.00	3	0	3	0	y	ENSMUSG00000011382.9	Dhdh	chr7	protein_coding	dihydrodiol dehydrogenase (dimeric)
novel_NIR_17856	chr7	45128557	45137484	-	45128557	45129032	5pMXE	ENSMUST00000209450.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000011382.9	Dhdh	chr7	protein_coding	dihydrodiol dehydrogenase (dimeric)
novel_NIR_17857	chr7	45159271	45171374	-	45159271	45159514	5pMXE	ENSMUST00000209436.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030824.18	Nucb1	chr7	protein_coding	nucleobindin 1
novel_NIR_17858	chr7	45159271	45171374	-	45159271	45159656	5pMXE	ENSMUST00000211682.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000030824.18	Nucb1	chr7	protein_coding	nucleobindin 1
novel_NIR_17859	chr7	45178807	45179993	+	45175865	45179993	A5SS	ENSMUST00000211227.2	novel	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040428.20	Plekha4	chr7	protein_coding	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4
novel_NIR_17860	chr7	45178807	45179993	+	45179557	45179993	5pMXE	ENSMUST00000209517.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000040428.20	Plekha4	chr7	protein_coding	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4
novel_NIR_17861	chr7	45188713	45189908	+	45188713	45189904	A3SS	ENSMUST00000211227.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000040428.20	Plekha4	chr7	protein_coding	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4
novel_NIR_17862	chr7	45215313	45220410	-	45219706	45220410	3pMXE	ENSMUST00000210623.2	novel	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.29	2	5	2	5	y	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.00	0	5	0	5	n	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	ENSMUSG00000109644.2	0610005C13Rik	chr7	lncRNA	RIKEN cDNA 0610005C13 gene
novel_NIR_17863	chr7	45215313	45220410	-	45219979	45220410	3pMXE	ENSMUST00000211521.2	novel	0.00	0	16	0	16	n	0.00	0	5	0	5	n	0.17	2	10	2	10	y	0.00	0	19	0	19	n	0.00	0	24	0	24	n	0.00	0	9	0	9	n	0.00	0	22	0	22	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.00	0	20	0	20	n	0.00	0	15	0	15	n	0.00	0	11	0	11	n	ENSMUSG00000109644.2	0610005C13Rik	chr7	lncRNA	RIKEN cDNA 0610005C13 gene
novel_NIR_17864	chr7	45217408	45220410	-	45219706	45220410	3pMXE	ENSMUST00000210623.2	novel	0.09	1	10	1	10	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.10	1	9	1	9	n	0.23	5	17	5	17	y	0.00	0	5	0	5	n	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.09	1	10	1	10	n	0.00	0	5	0	5	n	ENSMUSG00000109644.2	0610005C13Rik	chr7	lncRNA	RIKEN cDNA 0610005C13 gene
novel_NIR_17865	chr7	45217408	45220410	-	45219979	45220410	3pMXE	ENSMUST00000211521.2	novel	0.06	1	16	1	16	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.05	1	19	1	19	n	0.17	5	24	5	24	y	0.00	0	9	0	9	n	0.00	0	22	0	22	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.00	0	20	0	20	n	0.06	1	15	1	15	n	0.00	0	11	0	11	n	ENSMUSG00000109644.2	0610005C13Rik	chr7	lncRNA	RIKEN cDNA 0610005C13 gene
novel_NIR_17866	chr7	45217430	45220410	-	45219706	45220410	3pMXE	ENSMUST00000210623.2	novel	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.00	0	5	0	5	n	0.16	3	16	3	16	y	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	ENSMUSG00000109644.2	0610005C13Rik	chr7	lncRNA	RIKEN cDNA 0610005C13 gene
novel_NIR_17867	chr7	45220567	45223837	-	45217803	45223837	A3SS	ENSMUST00000210383.2	novel	0.00	0	31	0	31	n	0.06	2	30	2	30	n	0.33	2	4	2	4	y	0.21	7	26	7	26	y	0.00	0	44	0	44	n	0.00	0	13	0	13	n	0.00	0	51	0	51	n	0.00	0	17	0	17	n	0.03	1	31	1	31	n	0.00	0	23	0	23	n	0.00	0	30	0	30	n	0.14	7	42	7	42	n	ENSMUSG00000109644.2	0610005C13Rik	chr7	lncRNA	RIKEN cDNA 0610005C13 gene
novel_NIR_17868	chr7	45220581	45223837	-	45217803	45223837	A3SS	ENSMUST00000210383.2	novel	0.24	10	31	10	31	y	0.00	0	30	0	30	n	0.00	0	4	0	4	n	0.00	0	26	0	26	n	0.00	0	44	0	44	n	0.00	0	13	0	13	n	0.15	9	51	9	51	y	0.00	0	17	0	17	n	0.00	0	31	0	31	n	0.00	0	23	0	23	n	0.00	0	30	0	30	n	0.00	0	42	0	42	n	ENSMUSG00000109644.2	0610005C13Rik	chr7	lncRNA	RIKEN cDNA 0610005C13 gene
novel_NIR_17869	chr7	45220581	45223837	-	45220609	45223837	A3SS	ENSMUST00000209510.2	novel	0.24	10	32	10	32	y	0.00	0	39	0	39	n	0.00	0	17	0	17	n	0.00	0	51	0	51	n	0.00	0	50	0	50	n	0.00	0	16	0	16	n	0.16	9	46	9	46	y	0.00	0	30	0	30	n	0.00	0	31	0	31	n	0.00	0	58	0	58	n	0.00	0	37	0	37	n	0.00	0	45	0	45	n	ENSMUSG00000109644.2	0610005C13Rik	chr7	lncRNA	RIKEN cDNA 0610005C13 gene
novel_NIR_17870	chr7	45357138	45357684	+	45355186	45357684	A5SS	ENSMUST00000211513.2	novel	0.35	19	35	19	35	y	0.11	4	32	4	32	n	1.00	1	0	1	0	n	0.26	11	32	11	32	y	0.38	5	8	5	8	y	-	-	-	-	-	-	0.28	11	28	11	28	y	1.00	1	0	1	0	n	0.18	6	28	6	28	y	0.21	14	53	14	53	y	0.26	16	45	16	45	y	0.23	13	43	13	43	y	ENSMUSG00000059824.13	Dbp	chr7	protein_coding	D site albumin promoter binding protein
novel_NIR_17871	chr7	45357138	45357684	+	45356140	45357684	A5SS	ENSMUST00000211357.2	novel	0.79	19	5	19	5	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	0.55	11	9	11	9	y	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	11	0	11	0	y	1.00	1	0	1	0	n	1.00	6	0	6	0	y	1.00	14	0	14	0	y	0.64	16	9	16	9	y	1.00	13	0	13	0	y	ENSMUSG00000059824.13	Dbp	chr7	protein_coding	D site albumin promoter binding protein
novel_NIR_17872	chr7	45363152	45364498	-	45363152	45366417	A5SS	ENSMUST00000107737.11	novel	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.00	0	20	0	20	n	0.21	6	23	6	23	y	0.11	5	42	5	42	n	0.17	3	15	3	15	y	0.14	4	25	4	25	n	0.00	0	24	0	24	n	0.04	1	22	1	22	n	0.09	2	20	2	20	n	0.00	0	24	0	24	n	0.06	1	17	1	17	n	ENSMUSG00000057342.16	Sphk2	chr7	protein_coding	sphingosine kinase 2
novel_NIR_17873	chr7	45363152	45364498	-	45363152	45367125	A5SS	ENSMUST00000210060.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	6	3	6	3	y	0.50	5	5	5	5	y	0.43	3	4	3	4	y	0.33	4	8	4	8	y	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.25	1	3	1	3	n	ENSMUSG00000057342.16	Sphk2	chr7	protein_coding	sphingosine kinase 2
novel_NIR_17874	chr7	45363697	45368677	+	45368004	45368677	5pMXE	ENSMUST00000209287.2	novel	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.22	2	7	2	7	y	0.00	0	6	0	6	n	0.00	0	17	0	17	n	0.00	0	8	0	8	n	0.00	0	21	0	21	n	0.00	0	5	0	5	n	0.23	3	10	3	10	y	0.20	2	8	2	8	y	0.08	1	11	1	11	n	0.08	1	11	1	11	n	ENSMUSG00000059070.17	Rpl18	chr7	protein_coding	ribosomal protein L18
novel_NIR_17875	chr7	45365266	45365575	+	45365266	45365572	A3SS	ENSMUST00000210640.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.17	1	5	1	5	n	ENSMUSG00000059070.17	Rpl18	chr7	protein_coding	ribosomal protein L18
novel_NIR_17876	chr7	45366832	45367125	-	45363152	45367125	A3SS	ENSMUST00000210060.2	novel	0.33	1	2	1	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.44	4	5	4	5	y	0.00	0	4	0	4	n	0.20	2	8	2	8	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000057342.16	Sphk2	chr7	protein_coding	sphingosine kinase 2
novel_NIR_17877	chr7	45368081	45368677	+	45368004	45368677	A5SS	ENSMUST00000209287.2	novel	0.06	1	15	1	15	n	0.07	1	13	1	13	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.11	2	17	2	17	n	0.33	4	8	4	8	y	0.00	0	21	0	21	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.15	2	11	2	11	y	0.00	0	11	0	11	n	ENSMUSG00000059070.17	Rpl18	chr7	protein_coding	ribosomal protein L18
novel_NIR_17878	chr7	45522659	45523183	+	45522598	45523183	A5SS	ENSMUST00000211234.2	novel	0.25	2	6	2	6	y	0.00	0	11	0	11	n	0.00	0	27	0	27	n	0.00	0	17	0	17	n	0.00	0	22	0	22	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	20	0	20	n	0.00	0	11	0	11	n	0.00	0	21	0	21	n	0.00	0	19	0	19	n	0.00	0	21	0	21	n	ENSMUSG00000002778.15	Kdelr1	chr7	protein_coding	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1
novel_NIR_17879	chr7	45522685	45523183	+	45522598	45523183	A5SS	ENSMUST00000211234.2	novel	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.10	3	27	3	27	n	0.00	0	17	0	17	n	0.27	8	22	8	22	y	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.20	5	20	5	20	y	0.00	0	11	0	11	n	0.00	0	21	0	21	n	0.10	2	19	2	19	n	0.25	7	21	7	21	y	ENSMUSG00000002778.15	Kdelr1	chr7	protein_coding	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1
novel_NIR_17880	chr7	45613828	45626668	-	45617144	45626668	3pMXE	ENSMUST00000211220.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030834.8	Abcc6	chr7	protein_coding	ATP-binding cassette, sub-family C (CFTR/MRP), member 6
novel_NIR_17881	chr7	45632855	45634514	-	45632855	45634485	A5SS	ENSMUST00000002850.8	novel	0.16	41	222	41	222	y	0.13	32	207	32	207	n	0.17	10	48	10	48	y	0.14	34	211	34	211	n	0.19	50	208	50	208	y	0.29	18	45	18	45	y	0.15	41	229	41	229	y	0.19	19	83	19	83	y	0.13	30	203	30	203	n	0.16	59	299	59	299	y	0.21	57	215	57	215	y	0.20	61	244	61	244	y	ENSMUSG00000030834.8	Abcc6	chr7	protein_coding	ATP-binding cassette, sub-family C (CFTR/MRP), member 6
novel_NIR_17882	chr7	45647849	45648074	-	45646398	45648074	A3SS	ENSMUST00000211780.2	novel	0.50	7	7	7	7	y	0.75	15	5	15	5	y	0.80	4	1	4	1	y	0.62	10	6	10	6	y	0.24	5	16	5	16	y	0.00	0	1	0	1	n	0.45	5	6	5	6	y	0.36	5	9	5	9	y	0.27	6	16	6	16	y	0.42	13	18	13	18	y	0.36	5	9	5	9	y	0.60	9	6	9	6	y	ENSMUSG00000030834.8	Abcc6	chr7	protein_coding	ATP-binding cassette, sub-family C (CFTR/MRP), member 6
novel_NIR_17883	chr7	45700120	45701187	+	45700120	45703926	A3SS	ENSMUST00000033121.7	novel	0.18	6	27	6	27	y	0.08	2	22	2	22	n	0.01	1	105	1	105	n	0.14	8	49	8	49	n	0.08	8	88	8	88	n	0.07	4	54	4	54	n	0.10	7	62	7	62	n	0.07	5	68	5	68	n	0.00	0	41	0	41	n	0.02	1	45	1	45	n	0.00	0	26	0	26	n	0.00	0	36	0	36	n	ENSMUSG00000030835.7	Nomo1	chr7	protein_coding	nodal modulator 1
novel_NIR_17884	chr7	46126046	46165092	-	46162484	46165092	A3SS&ES	ENSMUST00000216505.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030839.13	Sergef	chr7	protein_coding	secretion regulating guanine nucleotide exchange factor
novel_NIR_17885	chr7	4632801	4633146	-	4632801	4633211	A5SS	ENSMUST00000206610.2	novel	0.50	1	1	1	1	n	0.25	1	3	1	3	n	0.88	7	1	7	1	y	0.71	5	2	5	2	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.20	1	4	1	4	n	0.60	3	2	3	2	y	0.20	2	8	2	8	y	0.20	1	4	1	4	n	0.78	7	2	7	2	y	ENSMUSG00000045282.8	Tmem86b	chr7	protein_coding	transmembrane protein 86B
novel_NIR_17886	chr7	4632801	4633146	-	4632801	4634122	A5SS	ENSMUST00000205402.2	novel	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.78	7	2	7	2	y	0.83	5	1	5	1	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.25	1	3	1	3	n	0.60	3	2	3	2	y	0.50	2	2	2	2	y	0.14	1	6	1	6	n	0.70	7	3	7	3	n	ENSMUSG00000045282.8	Tmem86b	chr7	protein_coding	transmembrane protein 86B
novel_NIR_17887	chr7	4632801	4633206	-	4632801	4633211	A5SS	ENSMUST00000206610.2	novel	0.95	19	1	19	1	y	0.67	6	3	6	3	y	0.89	8	1	8	1	y	0.91	21	2	21	2	y	0.85	23	4	23	4	y	0.60	3	2	3	2	y	0.91	32	3	32	3	y	0.33	2	4	2	4	y	0.90	18	2	18	2	y	0.65	15	8	15	8	y	0.69	9	4	9	4	y	0.89	17	2	17	2	y	ENSMUSG00000045282.8	Tmem86b	chr7	protein_coding	transmembrane protein 86B
novel_NIR_17888	chr7	4632801	4633206	-	4632801	4634122	A5SS	ENSMUST00000205402.2	novel	1.00	19	0	19	0	y	0.86	6	1	6	1	y	0.80	8	2	8	2	y	0.95	21	1	21	1	y	0.88	23	3	23	3	y	0.75	3	1	3	1	y	0.94	32	2	32	2	y	0.40	2	3	2	3	y	0.90	18	2	18	2	y	0.88	15	2	15	2	y	0.60	9	6	9	6	y	0.85	17	3	17	3	n	ENSMUSG00000045282.8	Tmem86b	chr7	protein_coding	transmembrane protein 86B
novel_NIR_17889	chr7	4632849	4633211	-	4632801	4633211	A3SS	ENSMUST00000206610.2	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.60	3	2	3	2	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000045282.8	Tmem86b	chr7	protein_coding	transmembrane protein 86B
novel_NIR_17890	chr7	46362151	46362814	-	46362151	46363085	A5SS	ENSMUST00000211660.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.47	9	10	9	10	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040026.9	Saa3	chr7	protein_coding	serum amyloid A 3
novel_NIR_17891	chr7	46362151	46363424	-	46362151	46363085	5pMXE	ENSMUST00000211660.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.23	3	10	3	10	y	-	-	-	-	-	-	1.00	6	0	6	0	y	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040026.9	Saa3	chr7	protein_coding	serum amyloid A 3
novel_NIR_17892	chr7	46362151	46363641	-	46362151	46363085	5pMXE	ENSMUST00000211660.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	10	0	10	n	-	-	-	-	-	-	-	-	-	-	-	-	0.25	2	6	2	6	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040026.9	Saa3	chr7	protein_coding	serum amyloid A 3
novel_NIR_17893	chr7	46362151	46363896	-	46362151	46363085	5pMXE	ENSMUST00000211660.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	10	0	10	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.55	6	5	6	5	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040026.9	Saa3	chr7	protein_coding	serum amyloid A 3
novel_NIR_17894	chr7	46362151	46363945	-	46362151	46363085	5pMXE	ENSMUST00000211660.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	10	0	10	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	3	6	3	6	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040026.9	Saa3	chr7	protein_coding	serum amyloid A 3
novel_NIR_17895	chr7	46362151	46365071	-	46362151	46363085	5pMXE	ENSMUST00000211660.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.64	18	10	18	10	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040026.9	Saa3	chr7	protein_coding	serum amyloid A 3
novel_NIR_17896	chr7	46362151	46391856	-	46362151	46363085	5pMXE	ENSMUST00000211660.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	10	0	10	n	-	-	-	-	-	-	1.00	9	0	9	0	y	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040026.9	Saa3	chr7	protein_coding	serum amyloid A 3
novel_NIR_17897	chr7	46391950	46392373	-	46391947	46392373	A3SS	ENSMUST00000128088.4	novel	0.61	13701	8892	13701	8892	y	0.60	22473	14842	22473	14842	y	0.59	53577	37000	53577	37000	y	0.59	14538	9945	14538	9945	y	0.61	33800	22051	33800	22051	y	0.60	37026	24896	37026	24896	y	0.60	32532	21635	32532	21635	y	0.60	37582	25209	37582	25209	y	0.60	10047	6600	10047	6600	y	0.60	17437	11395	17437	11395	y	0.59	12079	8546	12079	8546	y	0.59	14145	9966	14145	9966	y	ENSMUSG00000074115.6	Saa1	chr7	protein_coding	serum amyloid A 1
novel_NIR_17898	chr7	46401288	46401693	+	46401288	46402842	A3SS	ENSMUST00000210272.2	novel	0.20	28	112	28	112	n	0.14	27	165	27	165	n	0.06	103	1649	103	1649	n	0.18	18	80	18	80	y	0.16	48	260	48	260	n	0.01	5	542	5	542	n	0.07	25	345	25	345	n	0.05	17	360	17	360	n	0.17	8	40	8	40	n	0.00	0	86	0	86	n	0.25	19	58	19	58	n	0.35	23	43	23	43	y	ENSMUSG00000057465.6	Saa2	chr7	protein_coding	serum amyloid A 2
novel_NIR_17899	chr7	46401288;46401804	46401693;46402842	+	46401288	46402842	cassetteExon	ENSMUST00000210272.2	novel	0.11	14.0	112	28;0	112	n	0.13	24.0	165	27;21	165	n	0.03	57.5	1649	103;12	1649	n	0.10	9.0	80	18;0	80	n	0.09	25.0	260	48;2	260	n	0.03	16.5	542	5;28	542	n	0.06	23.0	345	25;21	345	n	0.06	22.5	360	17;28	360	n	0.14	6.5	40	8;5	40	n	0.01	1.0	86	0;2	86	n	0.21	15.0	58	19;11	58	y	0.21	11.5	43	23;0	43	n	ENSMUSG00000057465.6	Saa2	chr7	protein_coding	serum amyloid A 2
novel_NIR_17900	chr7	46418521	46418717	-	46417576	46418717	A3SS	ENSMUST00000130365.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	5	0	5	0	y	ENSMUSG00000014418.17	Hps5	chr7	protein_coding	HPS5, biogenesis of lysosomal organelles complex 2 subunit 2
novel_NIR_17901	chr7	46418521	46418717	-	46418516	46418717	A3SS	ENSMUST00000142663.8	novel	0.00	0	22	0	22	n	0.03	1	34	1	34	n	0.00	0	23	0	23	n	0.00	0	29	0	29	n	0.06	2	32	2	32	n	0.20	2	8	2	8	y	0.00	0	25	0	25	n	0.00	0	27	0	27	n	0.00	0	17	0	17	n	0.02	1	42	1	42	n	0.00	0	31	0	31	n	0.12	5	36	5	36	n	ENSMUSG00000014418.17	Hps5	chr7	protein_coding	HPS5, biogenesis of lysosomal organelles complex 2 subunit 2
novel_NIR_17902	chr7	46427534	46428496	-	46427524	46428496	A3SS	ENSMUST00000107653.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	3	3	3	3	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000014418.17	Hps5	chr7	protein_coding	HPS5, biogenesis of lysosomal organelles complex 2 subunit 2
novel_NIR_17903	chr7	46433107	46434950	-	46434843	46434950	3pMXE	ENSMUST00000211528.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000110087.2	Gm45309	chr7	lncRNA	predicted gene 45309
novel_NIR_17904	chr7	46434843	46435934	-	46433107	46435934	A3SS	ENSMUST00000142663.8	novel	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	21	0	21	n	0.00	0	10	0	10	n	0.12	1	7	1	7	n	0.15	2	11	2	11	y	0.00	0	4	0	4	n	0.09	1	10	1	10	n	0.00	0	22	0	22	n	0.07	1	13	1	13	n	0.00	0	22	0	22	n	ENSMUSG00000014418.17	Hps5	chr7	protein_coding	HPS5, biogenesis of lysosomal organelles complex 2 subunit 2
novel_NIR_17905	chr7	46434843	46435934	-	46433141	46435934	A3SS	ENSMUST00000211347.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	-	-	-	-	-	-	ENSMUSG00000014418.17	Hps5	chr7	protein_coding	HPS5, biogenesis of lysosomal organelles complex 2 subunit 2
novel_NIR_17906	chr7	46434843	46435934	-	46434843	46434950	5pMXE	ENSMUST00000211528.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000110087.2	Gm45309	chr7	lncRNA	predicted gene 45309
novel_NIR_17907	chr7	46435063	46435934	-	46433107	46435934	A3SS	ENSMUST00000142663.8	novel	0.07	1	14	1	14	n	0.22	2	7	2	7	y	0.00	0	10	0	10	n	0.00	0	21	0	21	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	22	0	22	n	0.00	0	13	0	13	n	0.04	1	22	1	22	n	ENSMUSG00000014418.17	Hps5	chr7	protein_coding	HPS5, biogenesis of lysosomal organelles complex 2 subunit 2
novel_NIR_17908	chr7	46435063	46435934	-	46433141	46435934	A3SS	ENSMUST00000211347.2	novel	0.50	1	1	1	1	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	ENSMUSG00000014418.17	Hps5	chr7	protein_coding	HPS5, biogenesis of lysosomal organelles complex 2 subunit 2
novel_NIR_17909	chr7	46440496	46440779	-	46440496	46445331	A5SS	ENSMUST00000152759.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000014418.17	Hps5	chr7	protein_coding	HPS5, biogenesis of lysosomal organelles complex 2 subunit 2
novel_NIR_17910	chr7	46445712	46451106	+	46445712	46446821	A3SS&ES	ENSMUST00000165031.8	novel	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000006599.14	Gtf2h1	chr7	protein_coding	general transcription factor II H, polypeptide 1
novel_NIR_17911	chr7	46451264	46453224	+	46451264	46454385	A3SS	ENSMUST00000128420.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000006599.14	Gtf2h1	chr7	protein_coding	general transcription factor II H, polypeptide 1
novel_NIR_17912	chr7	46495341	46495688	+	46495341	46495726	A3SS	ENSMUST00000092621.12	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.82	9	2	9	2	y	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.80	4	1	4	1	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000063229.16	Ldha	chr7	protein_coding	lactate dehydrogenase A
novel_NIR_17913	chr7	46495341	46495688	+	46495341	46496813	A3SS	ENSMUST00000125862.8	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.56	9	7	9	7	y	0.00	0	5	0	5	n	0.67	2	1	2	1	y	0.50	4	4	4	4	y	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	ENSMUSG00000063229.16	Ldha	chr7	protein_coding	lactate dehydrogenase A
novel_NIR_17914	chr7	46495341	46495688	+	46495341	46496963	A3SS	ENSMUST00000210467.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.75	9	3	9	3	y	0.00	0	3	0	3	n	0.40	2	3	2	3	y	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.14	1	6	1	6	n	0.14	1	6	1	6	n	0.33	1	2	1	2	n	-	-	-	-	-	-	ENSMUSG00000063229.16	Ldha	chr7	protein_coding	lactate dehydrogenase A
novel_NIR_17915	chr7	46495341	46495695	+	46495341	46495726	A3SS	ENSMUST00000092621.12	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.67	4	2	4	2	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000063229.16	Ldha	chr7	protein_coding	lactate dehydrogenase A
novel_NIR_17916	chr7	46495341	46495695	+	46495341	46496813	A3SS	ENSMUST00000125862.8	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.36	4	7	4	7	y	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000063229.16	Ldha	chr7	protein_coding	lactate dehydrogenase A
novel_NIR_17917	chr7	46495341	46495695	+	46495341	46496963	A3SS	ENSMUST00000210467.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.57	4	3	4	3	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000063229.16	Ldha	chr7	protein_coding	lactate dehydrogenase A
novel_NIR_17918	chr7	4649939	4654819	-	4649939	4650377	5pMXE	ENSMUST00000206532.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000052296.8	Ppp6r1	chr7	protein_coding	protein phosphatase 6, regulatory subunit 1
novel_NIR_17919	chr7	4649939	4654819	-	4649939	4661678	A5SS	ENSMUST00000205374.2	novel	0.60	3	2	3	2	y	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.50	2	2	2	2	y	1.00	1	0	1	0	n	0.33	2	4	2	4	y	0.00	0	1	0	1	n	1.00	2	0	2	0	y	ENSMUSG00000052296.8	Ppp6r1	chr7	protein_coding	protein phosphatase 6, regulatory subunit 1
novel_NIR_17920	chr7	4649939	4660562	-	4649939	4650377	5pMXE	ENSMUST00000206532.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000052296.8	Ppp6r1	chr7	protein_coding	protein phosphatase 6, regulatory subunit 1
novel_NIR_17921	chr7	4649939	4660562	-	4649939	4661678	A5SS	ENSMUST00000205374.2	novel	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.20	1	4	1	4	n	0.67	2	1	2	1	y	1.00	1	0	1	0	n	ENSMUSG00000052296.8	Ppp6r1	chr7	protein_coding	protein phosphatase 6, regulatory subunit 1
novel_NIR_17922	chr7	4649939	4662306	-	4649939	4650377	5pMXE	ENSMUST00000206532.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000052296.8	Ppp6r1	chr7	protein_coding	protein phosphatase 6, regulatory subunit 1
novel_NIR_17923	chr7	4649939	4662306	-	4649939	4661678	5pMXE	ENSMUST00000205374.2	novel	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.83	5	1	5	1	y	1.00	1	0	1	0	n	0.60	3	2	3	2	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.56	5	4	5	4	y	0.00	0	1	0	1	n	1.00	3	0	3	0	y	ENSMUSG00000052296.8	Ppp6r1	chr7	protein_coding	protein phosphatase 6, regulatory subunit 1
novel_NIR_17924	chr7	46502823	46503407	+	46500482	46503407	A5SS	ENSMUST00000209548.2	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000063229.16	Ldha	chr7	protein_coding	lactate dehydrogenase A
novel_NIR_17925	chr7	46550866	46556799	-	46542308	46556799	A3SS	ENSMUST00000209538.2	novel	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	5	0	5	n	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	ENSMUSG00000014402.16	Tsg101	chr7	protein_coding	tumor susceptibility gene 101
novel_NIR_17926	chr7	46560558	46562949	-	46560558	46569569	A5SS	ENSMUST00000156335.9	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.60	3	2	3	2	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000014402.16	Tsg101	chr7	protein_coding	tumor susceptibility gene 101
novel_NIR_17927	chr7	46658339	46658472	+	46658194	46658472	A5SS	ENSMUST00000208993.2	novel	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.67	2	1	2	1	y	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.12	1	7	1	7	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.50	2	2	2	2	y	ENSMUSG00000109118.2	Gm32031	chr7	lncRNA	predicted gene, 32031
novel_NIR_17928	chr7	46658339	46658472	+	46658339	46658411	A3SS	ENSMUST00000208927.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000109118.2	Gm32031	chr7	lncRNA	predicted gene, 32031
novel_NIR_17929	chr7	46658339	46658472	+	46658341	46658472	A5SS	ENSMUST00000208046.2	novel	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.67	2	1	2	1	y	0.12	1	7	1	7	n	0.00	0	5	0	5	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.17	1	5	1	5	n	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.50	2	2	2	2	y	ENSMUSG00000109118.2	Gm32031	chr7	lncRNA	predicted gene, 32031
novel_NIR_17930	chr7	4796625	4797068	+	4796625	4797049	A3SS	ENSMUST00000126794.2	novel	0.00	0	13	0	13	n	0.00	0	18	0	18	n	0.72	61	24	61	24	y	-	-	-	-	-	-	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.00	0	25	0	25	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	16	0	16	n	0.00	0	13	0	13	n	ENSMUSG00000030432.13	Rpl28	chr7	protein_coding	ribosomal protein L28
novel_NIR_17931	chr7	48489306	48492244	-	48489306	48494829	A5SS	ENSMUST00000208050.2	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.33	3	6	3	6	y	0.00	0	3	0	3	n	0.12	1	7	1	7	n	0.25	1	3	1	3	n	-	-	-	-	-	-	ENSMUSG00000030470.16	Csrp3	chr7	protein_coding	cysteine and glycine-rich protein 3
novel_NIR_17932	chr7	48489306	48492244	-	48489306	48497746	A5SS	ENSMUST00000032658.14	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	20	0	20	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000030470.16	Csrp3	chr7	protein_coding	cysteine and glycine-rich protein 3
novel_NIR_17933	chr7	48489306	48493127	-	48489306	48494829	A5SS	ENSMUST00000208050.2	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.17	1	5	1	5	n	-	-	-	-	-	-	0.38	5	8	5	8	y	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.42	5	7	5	7	y	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000030470.16	Csrp3	chr7	protein_coding	cysteine and glycine-rich protein 3
novel_NIR_17934	chr7	48489306	48493127	-	48489306	48497746	A5SS	ENSMUST00000032658.14	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.83	5	1	5	1	y	0.00	0	2	0	2	n	0.09	2	20	2	20	n	-	-	-	-	-	-	-	-	-	-	-	-	0.83	5	1	5	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030470.16	Csrp3	chr7	protein_coding	cysteine and glycine-rich protein 3
novel_NIR_17935	chr7	48525519	48527372	-	48525519	48527690	A5SS	ENSMUST00000058745.15	novel	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	19	0	19	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.20	2	8	2	8	y	0.00	0	6	0	6	n	0.00	0	1	0	1	n	ENSMUSG00000046179.18	E2f8	chr7	protein_coding	E2F transcription factor 8
novel_NIR_17936	chr7	48527860	48530269	+	48527860	48528082	A3SS&ES	ENSMUST00000209288.2	novel	0.00	0	18	0	18	n	0.00	0	21	0	21	n	0.00	0	13	0	13	n	0.00	0	16	0	16	n	0.07	3	38	3	38	n	0.00	0	7	0	7	n	0.03	1	37	1	37	n	0.15	2	11	2	11	y	0.06	1	16	1	16	n	0.00	0	30	0	30	n	0.03	1	38	1	38	n	0.18	2	9	2	9	y	ENSMUSG00000085995.3	Gm2788	chr7	lncRNA	predicted gene 2788
novel_NIR_17937	chr7	48527860	48530269	+	48527860	48548457	A3SS	ENSMUST00000210463.2	novel	0.00	0	23	0	23	n	0.00	0	20	0	20	n	0.00	0	7	0	7	n	0.00	0	22	0	22	n	0.06	3	46	3	46	n	-	-	-	-	-	-	0.02	1	41	1	41	n	0.25	2	6	2	6	y	0.03	1	28	1	28	n	0.00	0	33	0	33	n	0.03	1	36	1	36	n	0.17	2	10	2	10	y	ENSMUSG00000085995.3	Gm2788	chr7	lncRNA	predicted gene 2788
novel_NIR_17938	chr7	48527860	48530381	+	48527860;48528195	48528082;48530381	ES	ENSMUST00000209288.2	novel	0.00	0	10.0	0	18;2	n	0.00	0	11.0	0	21;1	n	0.00	0	7.0	0	13;1	n	0.10	1	9.0	1	16;2	n	0.16	4	21.5	4	38;5	y	0.00	0	4.5	0	7;2	n	0.05	1	20.5	1	37;4	n	0.00	0	6.0	0	11;1	n	0.00	0	10.0	0	16;4	n	0.10	2	18.5	2	30;7	n	0.00	0	20.5	0	38;3	n	0.17	1	5.0	1	9;1	n	ENSMUSG00000085995.3	Gm2788	chr7	lncRNA	predicted gene 2788
novel_NIR_17939	chr7	48527860	48535185	+	48531265	48535185	5pMXE	ENSMUST00000147173.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	0.46	6	7	6	7	y	0.00	0	7	0	7	n	0.12	1	7	1	7	n	-	-	-	-	-	-	0.38	3	5	3	5	y	0.00	0	2	0	2	n	0.57	4	3	4	3	y	0.00	0	2	0	2	n	ENSMUSG00000085995.3	Gm2788	chr7	lncRNA	predicted gene 2788
novel_NIR_17940	chr7	48528195	48530264	+	48528195	48530381	A3SS	ENSMUST00000209288.2	novel	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000085995.3	Gm2788	chr7	lncRNA	predicted gene 2788
novel_NIR_17941	chr7	48528195	48530269	+	48528195	48530381	A3SS	ENSMUST00000209288.2	novel	0.67	4	2	4	2	y	0.80	4	1	4	1	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.43	3	4	3	4	y	0.50	7	7	7	7	y	0.57	4	3	4	3	y	0.00	0	1	0	1	n	ENSMUSG00000085995.3	Gm2788	chr7	lncRNA	predicted gene 2788
novel_NIR_17942	chr7	48528195	48534286	+	48528195	48530381	A3SS&ES	ENSMUST00000209288.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.83	5	1	5	1	y	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.12	1	7	1	7	n	0.40	2	3	2	3	n	0.00	0	1	0	1	n	ENSMUSG00000085995.3	Gm2788	chr7	lncRNA	predicted gene 2788
novel_NIR_17943	chr7	48528195	48548457	+	48537178	48548457	5pMXE	ENSMUST00000211055.2	novel	1.00	3	0	3	0	y	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	6	3	6	3	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000085995.3	Gm2788	chr7	lncRNA	predicted gene 2788
novel_NIR_17944	chr7	48528195;48534417	48534286;48534625	+	48528195;48530744	48530381;48534625	MXE	ENSMUST00000209288.2	novel	0.00	0.0	1.0	0;0	2;0	n	0.00	0.0	1.5	0;0	1;2	n	0.83	2.5	0.5	5;0	1;0	n	0.33	0.5	1.0	1;0	2;0	n	0.12	0.5	3.5	0;1	5;2	n	0.33	0.5	1.0	0;1	2;0	n	0.20	0.5	2.0	1;0	4;0	n	0.00	0.0	0.5	0;0	1;0	n	0.20	0.5	2.0	1;0	4;0	n	0.12	0.5	3.5	1;0	7;0	n	0.62	2.5	1.5	2;3	3;0	y	0.00	0.0	0.5	0;0	1;0	n	ENSMUSG00000085995.3	Gm2788	chr7	lncRNA	predicted gene 2788
novel_NIR_17945	chr7	48530744	48531174	+	48530744	48534625	A3SS	ENSMUST00000209288.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000085995.3	Gm2788	chr7	lncRNA	predicted gene 2788
novel_NIR_17946	chr7	48530744	48534676	+	48530744	48534625	A3SS	ENSMUST00000209288.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000085995.3	Gm2788	chr7	lncRNA	predicted gene 2788
novel_NIR_17947	chr7	48530744	48535185	+	48530744;48534871	48534625;48535185	ES	ENSMUST00000209288.2	novel	0.00	0	2.5	0	0;5	n	0.19	3	12.5	3	2;23	y	0.14	1	6.0	1	0;12	n	0.00	0	7.5	0	0;15	n	0.08	2	24.0	2	2;46	n	0.50	3	3.0	3	0;6	y	0.23	6	20.5	6	0;41	y	0.00	0	8.5	0	0;17	n	0.15	2	11.5	2	0;23	y	0.15	4	22.0	4	0;44	y	0.22	3	10.5	3	0;21	y	0.20	2	8.0	2	0;16	y	ENSMUSG00000085995.3	Gm2788	chr7	lncRNA	predicted gene 2788
novel_NIR_17948	chr7	48530744	48535185	+	48531265	48535185	5pMXE	ENSMUST00000147173.2	novel	0.00	0	1	0	1	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.22	2	7	2	7	y	0.30	3	7	3	7	y	0.46	6	7	6	7	y	-	-	-	-	-	-	0.29	2	5	2	5	y	0.67	4	2	4	2	y	0.50	3	3	3	3	y	0.50	2	2	2	2	y	ENSMUSG00000085995.3	Gm2788	chr7	lncRNA	predicted gene 2788
novel_NIR_17949	chr7	48531899	48535185	+	48531265	48535185	A5SS	ENSMUST00000147173.2	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.38	3	5	3	5	y	0.00	0	2	0	2	n	0.57	4	3	4	3	y	0.00	0	2	0	2	n	ENSMUSG00000085995.3	Gm2788	chr7	lncRNA	predicted gene 2788
novel_NIR_17950	chr7	48531899	48535185	+	48534871	48535185	A5SS&ES	ENSMUST00000209288.2	novel	0.17	1	5	1	5	n	0.00	0	23	0	23	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.00	0	46	0	46	n	0.00	0	6	0	6	n	0.00	0	41	0	41	n	0.00	0	17	0	17	n	0.12	3	23	3	23	n	0.00	0	44	0	44	n	0.16	4	21	4	21	y	0.00	0	16	0	16	n	ENSMUSG00000085995.3	Gm2788	chr7	lncRNA	predicted gene 2788
novel_NIR_17951	chr7	48537178	48543201	+	48537178	48548457	A3SS	ENSMUST00000211055.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.60	3	2	3	2	y	0.00	0	5	0	5	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000085995.3	Gm2788	chr7	lncRNA	predicted gene 2788
novel_NIR_17952	chr7	4854532	4861413	-	4854532	4873182	A5SS	ENSMUST00000208816.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000052605.13	Isoc2b	chr7	protein_coding	isochorismatase domain containing 2b
novel_NIR_17953	chr7	4854532	4869051	-	4854532	4873182	A5SS	ENSMUST00000208816.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000052605.13	Isoc2b	chr7	protein_coding	isochorismatase domain containing 2b
novel_NIR_17954	chr7	48548361	48548457	+	48537178	48548457	A5SS	ENSMUST00000211055.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000085995.3	Gm2788	chr7	lncRNA	predicted gene 2788
novel_NIR_17955	chr7	48548812	48550987	+	48548812	48555966	A3SS	ENSMUST00000210463.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000085995.3	Gm2788	chr7	lncRNA	predicted gene 2788
novel_NIR_17956	chr7	48548812	48550987	+	48548812	48557616	A3SS	ENSMUST00000209849.2	novel	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	14	0	14	n	0.67	2	1	2	1	y	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	ENSMUSG00000085995.3	Gm2788	chr7	lncRNA	predicted gene 2788
novel_NIR_17957	chr7	48548812	48551292	+	48548812	48555966	A3SS	ENSMUST00000210463.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000085995.3	Gm2788	chr7	lncRNA	predicted gene 2788
novel_NIR_17958	chr7	48548812	48551292	+	48548812	48557616	A3SS	ENSMUST00000209849.2	novel	0.11	1	8	1	8	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.40	4	6	4	6	y	-	-	-	-	-	-	0.12	2	14	2	14	n	0.00	0	1	0	1	n	0.17	1	5	1	5	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	ENSMUSG00000085995.3	Gm2788	chr7	lncRNA	predicted gene 2788
novel_NIR_17959	chr7	48553913	48556306	+	48556207	48556306	A5SS&ES	ENSMUST00000210463.2	novel	0.50	1	1	1	1	n	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000085995.3	Gm2788	chr7	lncRNA	predicted gene 2788
novel_NIR_17960	chr7	48553913	48557616	+	48548812	48557616	A5SS	ENSMUST00000209849.2	novel	0.11	1	8	1	8	n	0.20	2	8	2	8	y	0.00	0	3	0	3	n	0.50	3	3	3	3	y	0.68	13	6	13	6	y	-	-	-	-	-	-	0.18	3	14	3	14	y	0.50	1	1	1	1	n	0.38	3	5	3	5	y	0.35	6	11	6	11	y	0.33	2	4	2	4	y	0.00	0	1	0	1	n	ENSMUSG00000085995.3	Gm2788	chr7	lncRNA	predicted gene 2788
novel_NIR_17961	chr7	48553913	48557616	+	48556469	48557616	A5SS&ES	ENSMUST00000210463.2	novel	0.14	1	6	1	6	n	0.15	2	11	2	11	y	0.00	0	3	0	3	n	0.30	3	7	3	7	y	0.38	13	21	13	21	y	0.00	0	4	0	4	n	0.12	3	23	3	23	n	0.33	1	2	1	2	n	0.19	3	13	3	13	y	0.29	6	15	6	15	y	0.13	2	13	2	13	n	0.00	0	5	0	5	n	ENSMUSG00000085995.3	Gm2788	chr7	lncRNA	predicted gene 2788
novel_NIR_17962	chr7	48553913	48558877	+	48558493	48558877	5pMXE	ENSMUST00000184336.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000052512.18	Nav2	chr7	protein_coding	neuron navigator 2
novel_NIR_17963	chr7	48559055	48559362	+	48559067	48559362	A5SS	ENSMUST00000210463.2	novel	0.18	4	18	4	18	y	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.10	2	18	2	18	n	1.00	2	0	2	0	y	0.00	0	22	0	22	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.11	2	16	2	16	n	0.00	0	16	0	16	n	0.00	0	4	0	4	n	ENSMUSG00000085995.3	Gm2788	chr7	lncRNA	predicted gene 2788
novel_NIR_17964	chr7	48559465	48563393	+	48559465	48559691	3pMXE	ENSMUST00000210463.2	novel	0.26	5	14	5	14	y	0.62	5	3	5	3	y	-	-	-	-	-	-	0.12	1	7	1	7	n	0.67	4	2	4	2	y	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.60	9	6	9	6	y	0.12	1	7	1	7	n	0.50	1	1	1	1	n	ENSMUSG00000085995.3	Gm2788	chr7	lncRNA	predicted gene 2788
novel_NIR_17965	chr7	48559465	48563393	+	48559465	48597451	A3SS	ENSMUST00000184336.2	novel	1.00	5	0	5	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	9	0	9	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000052512.18	Nav2	chr7	protein_coding	neuron navigator 2
novel_NIR_17966	chr7	48559465	48563422	+	48559465	48559691	3pMXE	ENSMUST00000210463.2	novel	0.07	1	14	1	14	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.00	0	7	0	7	n	0.60	3	2	3	2	y	0.00	0	2	0	2	n	0.57	4	3	4	3	y	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	ENSMUSG00000085995.3	Gm2788	chr7	lncRNA	predicted gene 2788
novel_NIR_17967	chr7	48559465	48563422	+	48559465	48597451	A3SS	ENSMUST00000184336.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000052512.18	Nav2	chr7	protein_coding	neuron navigator 2
novel_NIR_17968	chr7	4902495	4902697	-	4902495	4909284	A5SS	ENSMUST00000210663.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000110221.2	Gm36210	chr7	protein_coding	predicted gene, 36210
novel_NIR_17969	chr7	49047486	49047831	+	49022117	49047831	A5SS	ENSMUST00000183659.8	novel	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.38	3	5	3	5	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000052512.18	Nav2	chr7	protein_coding	neuron navigator 2
novel_NIR_17970	chr7	49048854	49058381	+	49047903	49058381	A5SS	ENSMUST00000183659.8	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.24	5	16	5	16	y	0.17	1	5	1	5	n	0.33	5	10	5	10	y	0.14	1	6	1	6	n	0.40	2	3	2	3	y	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.75	3	1	3	1	y	ENSMUSG00000052512.18	Nav2	chr7	protein_coding	neuron navigator 2
novel_NIR_17971	chr7	49114677	49123948	+	49114677	49141117	A3SS	ENSMUST00000183659.8	novel	0.33	2	4	2	4	y	0.00	0	5	0	5	n	0.04	1	23	1	23	n	0.00	0	10	0	10	n	0.00	0	20	0	20	n	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	ENSMUSG00000052512.18	Nav2	chr7	protein_coding	neuron navigator 2
novel_NIR_17972	chr7	49156586	49185642	+	49141239	49185642	A5SS	ENSMUST00000183659.8	novel	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	24	0	24	n	0.00	0	7	0	7	n	0.11	2	17	2	17	n	0.00	0	17	0	17	n	0.00	0	8	0	8	n	0.00	0	17	0	17	n	0.29	2	5	2	5	y	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	ENSMUSG00000052512.18	Nav2	chr7	protein_coding	neuron navigator 2
novel_NIR_17973	chr7	49173901	49185642	+	49141239	49185642	A5SS	ENSMUST00000183659.8	novel	0.00	0	5	0	5	n	0.29	2	5	2	5	y	0.00	0	24	0	24	n	0.30	3	7	3	7	y	0.26	6	17	6	17	y	0.06	1	17	1	17	n	0.11	1	8	1	8	n	0.00	0	17	0	17	n	0.17	1	5	1	5	n	0.30	7	16	7	16	y	0.27	3	8	3	8	y	0.00	0	11	0	11	n	ENSMUSG00000052512.18	Nav2	chr7	protein_coding	neuron navigator 2
novel_NIR_17974	chr7	4918404	4921775	+	4918404;4920515	4920409;4921775	ES	ENSMUST00000116354.4	novel	0.40	4	6.0	4	8;4	y	0.00	0	3.5	0	1;6	n	0.09	1	10.0	1	13;7	n	0.50	4	4.0	4	3;5	y	0.20	2	8.0	2	8;8	y	0.00	0	3.0	0	4;2	n	0.00	0	3.5	0	7;0	n	0.00	0	4.5	0	6;3	n	0.00	0	3.0	0	3;3	n	0.00	0	7.5	0	8;7	n	0.22	1	3.5	1	6;1	n	0.00	0	11.0	0	7;15	n	ENSMUSG00000074406.6	Zfp628	chr7	protein_coding	zinc finger protein 628
novel_NIR_17975	chr7	49198289	49206658	+	49198289;49201797	49201345;49206658	ES	ENSMUST00000184109.2	novel	0.44	2	2.5	2	5;0	y	0.00	0	3.0	0	5;1	n	0.32	7	15.0	7	25;5	y	0.22	2	7.0	2	10;4	y	0.00	0	7.5	0	15;0	n	0.11	1	8.5	1	16;1	n	0.44	6	7.5	6	14;1	y	0.33	3	6.0	3	9;3	y	0.00	0	10.0	0	19;1	n	0.31	4	9.0	4	18;0	y	0.00	0	2.5	0	5;0	n	0.22	1	3.5	1	6;1	n	ENSMUSG00000052512.18	Nav2	chr7	protein_coding	neuron navigator 2
novel_NIR_17976	chr7	49201797	49203963	+	49201797	49206658	A3SS	ENSMUST00000184109.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.29	2	5	2	5	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.83	5	1	5	1	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000052512.18	Nav2	chr7	protein_coding	neuron navigator 2
novel_NIR_17977	chr7	49201797	49203963	+	49201797;49202653	49202588;49203963	ES	ENSMUST00000183659.8	novel	0.00	0	4.5	0	6;3	n	0.00	0	6.0	0	8;4	n	0.13	2	13.0	2	16;10	n	0.00	0	5.5	0	4;7	n	0.00	0	14.0	0	16;12	n	0.42	5	7.0	5	5;9	y	0.00	0	6.0	0	7;5	n	0.00	0	8.5	0	9;8	n	0.00	0	11.5	0	11;12	n	0.00	0	15.5	0	16;15	n	0.00	0	5.0	0	5;5	n	0.15	1	5.5	1	5;6	n	ENSMUSG00000052512.18	Nav2	chr7	protein_coding	neuron navigator 2
novel_NIR_17978	chr7	49202653	49206658	+	49201797	49206658	A5SS	ENSMUST00000184109.2	novel	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	5	0	5	n	0.00	0	4	0	4	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000052512.18	Nav2	chr7	protein_coding	neuron navigator 2
novel_NIR_17979	chr7	49202653	49206658	+	49202653;49204007	49203963;49206658	ES	ENSMUST00000183659.8	novel	0.00	0	3.0	0	3;3	n	0.31	2	4.5	2	4;5	y	0.00	0	12.0	0	10;14	n	0.00	0	8.0	0	7;9	n	0.08	1	12.0	1	12;12	n	0.00	0	11.5	0	9;14	n	0.00	0	6.5	0	5;8	n	0.00	0	10.5	0	8;13	n	0.00	0	13.5	0	12;15	n	0.00	0	13.5	0	15;12	n	0.00	0	6.0	0	5;7	n	0.00	0	7.5	0	6;9	n	ENSMUSG00000052512.18	Nav2	chr7	protein_coding	neuron navigator 2
novel_NIR_17980	chr7	49222201	49225396	+	49222201;49225003	49224995;49225396	ES	ENSMUST00000183659.8	novel	1.00	14	0.0	14	0;0	y	1.00	16	0.0	16	0;0	y	0.96	27	1.0	27	0;2	y	0.91	26	2.5	26	3;2	y	0.81	22	5.0	22	5;5	y	0.97	14	0.5	14	0;1	y	0.93	21	1.5	21	2;1	y	0.87	10	1.5	10	1;2	y	1.00	26	0.0	26	0;0	y	0.95	20	1.0	20	1;1	y	0.93	14	1.0	14	1;1	y	0.86	22	3.5	22	3;4	y	ENSMUSG00000052512.18	Nav2	chr7	protein_coding	neuron navigator 2
novel_NIR_17981	chr7	49222201	49225404	+	49222201	49224995	A3SS&ES	ENSMUST00000183659.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.75	3	1	3	1	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000052512.18	Nav2	chr7	protein_coding	neuron navigator 2
novel_NIR_17982	chr7	49408893	49409346	+	49408893	49409290	A3SS	ENSMUST00000208048.2	novel	0.71	12	5	12	5	y	0.58	11	8	11	8	y	0.62	8	5	8	5	y	0.36	8	14	8	14	y	0.44	12	15	12	15	y	0.62	8	5	8	5	y	0.36	8	14	8	14	y	0.00	0	2	0	2	n	0.44	8	10	8	10	y	0.46	18	21	18	21	y	0.50	10	10	10	10	y	0.32	7	15	7	15	y	ENSMUSG00000039745.9	Htatip2	chr7	protein_coding	HIV-1 Tat interactive protein 2
novel_NIR_17983	chr7	49408893	49409346	+	49409059	49409346	5pMXE	ENSMUST00000207895.2	novel	0.15	12	70	12	70	y	0.19	11	48	11	48	y	0.21	8	30	8	30	y	0.13	8	53	8	53	n	0.12	12	88	12	88	n	0.24	8	26	8	26	y	0.12	8	59	8	59	n	0.00	0	30	0	30	n	0.13	8	55	8	55	n	0.16	18	95	18	95	y	0.12	10	74	10	74	n	0.10	7	60	7	60	n	ENSMUSG00000039745.9	Htatip2	chr7	protein_coding	HIV-1 Tat interactive protein 2
novel_NIR_17984	chr7	5018559	5019945	+	5017525	5019945	A5SS	ENSMUST00000207901.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000051184.8	Zfp524	chr7	protein_coding	zinc finger protein 524
novel_NIR_17985	chr7	5023654	5030853	+	5023654	5031990	A3SS	ENSMUST00000076251.7	novel	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.29	2	5	2	5	y	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	ENSMUSG00000074405.9	Zfp865	chr7	protein_coding	zinc finger protein 865
novel_NIR_17986	chr7	5023654	5030853	+	5023654	5035762	A3SS	ENSMUST00000207362.2	novel	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.67	2	1	2	1	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	ENSMUSG00000074405.9	Zfp865	chr7	protein_coding	zinc finger protein 865
novel_NIR_17987	chr7	5023654	5030853	+	5023654	5062495	A3SS	ENSMUST00000208728.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035228.16	Ccdc106	chr7	protein_coding	coiled-coil domain containing 106
novel_NIR_17988	chr7	5023654	5031618	+	5023654	5035762	A3SS	ENSMUST00000207362.2	novel	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.67	2	1	2	1	y	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.11	1	8	1	8	n	0.00	0	5	0	5	n	ENSMUSG00000074405.9	Zfp865	chr7	protein_coding	zinc finger protein 865
novel_NIR_17989	chr7	5023654	5031618	+	5023654	5062495	A3SS	ENSMUST00000208728.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000035228.16	Ccdc106	chr7	protein_coding	coiled-coil domain containing 106
novel_NIR_17990	chr7	5023654	5031969	+	5023654	5031990	A3SS	ENSMUST00000076251.7	novel	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.29	2	5	2	5	y	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	ENSMUSG00000074405.9	Zfp865	chr7	protein_coding	zinc finger protein 865
novel_NIR_17991	chr7	5023654	5031969	+	5023654	5035762	A3SS	ENSMUST00000207362.2	novel	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.67	2	1	2	1	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	ENSMUSG00000074405.9	Zfp865	chr7	protein_coding	zinc finger protein 865
novel_NIR_17992	chr7	5023654	5031969	+	5023654	5062495	A3SS	ENSMUST00000208728.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035228.16	Ccdc106	chr7	protein_coding	coiled-coil domain containing 106
novel_NIR_17993	chr7	5023654;5031649	5031618;5031990	+	5023654	5031990	cassetteExon	ENSMUST00000076251.7	novel	0.00	0.0	11	0;0	11	n	0.00	0.0	6	0;0	6	n	0.00	0.0	3	0;0	3	n	0.20	3.0	12	2;4	12	y	0.07	0.5	7	0;1	7	n	0.00	0.0	3	0;0	3	n	0.00	0.0	5	0;0	5	n	0.14	1.0	6	1;1	6	n	0.00	0.0	10	0;0	10	n	0.00	0.0	9	0;0	9	n	0.20	1.0	4	1;1	4	n	0.00	0.0	4	0;0	4	n	ENSMUSG00000074405.9	Zfp865	chr7	protein_coding	zinc finger protein 865
novel_NIR_17994	chr7	5032854	5035762	+	5021038	5035762	A5SS	ENSMUST00000207050.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000109129.2	Gm44973	chr7	protein_coding	predicted gene 44973
novel_NIR_17995	chr7	5032854	5035762	+	5023654	5035762	A5SS	ENSMUST00000207362.2	novel	0.67	2	1	2	1	y	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	ENSMUSG00000074405.9	Zfp865	chr7	protein_coding	zinc finger protein 865
novel_NIR_17996	chr7	5032854	5035762	+	5034278	5035762	A5SS	ENSMUST00000085427.6	novel	0.67	2	1	2	1	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000074405.9	Zfp865	chr7	protein_coding	zinc finger protein 865
novel_NIR_17997	chr7	5032854	5035762	+	5035206	5035762	A5SS	ENSMUST00000076251.7	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000074405.9	Zfp865	chr7	protein_coding	zinc finger protein 865
novel_NIR_17998	chr7	5051989	5053730	-	5051986	5053730	A3SS	ENSMUST00000123644.3	novel	0.33	1	2	1	2	n	0.75	3	1	3	1	y	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.67	2	1	2	1	y	-	-	-	-	-	-	ENSMUSG00000086604.3	Gm15510	chr7	lncRNA	predicted gene 15510
novel_NIR_17999	chr7	5053917	5054334	-	5053917	5059752	A5SS	ENSMUST00000123644.3	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	ENSMUSG00000086604.3	Gm15510	chr7	lncRNA	predicted gene 15510
novel_NIR_18000	chr7	5053917	5054334	-	5053917	5059864	A5SS	ENSMUST00000145534.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	ENSMUSG00000086604.3	Gm15510	chr7	lncRNA	predicted gene 15510
novel_NIR_18001	chr7	5053917	5054501	-	5053917	5059752	A5SS	ENSMUST00000123644.3	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000086604.3	Gm15510	chr7	lncRNA	predicted gene 15510
novel_NIR_18002	chr7	5053917	5054501	-	5053917	5059864	A5SS	ENSMUST00000145534.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000086604.3	Gm15510	chr7	lncRNA	predicted gene 15510
novel_NIR_18003	chr7	5069537	5070543	+	5069537	5070353	A3SS	ENSMUST00000207097.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	0.00	0	3	0	3	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030435.17	U2af2	chr7	protein_coding	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2
novel_NIR_18004	chr7	5071791	5072443	+	5071795	5072443	A5SS	ENSMUST00000207498.2	novel	1.00	6	0	6	0	y	0.75	6	2	6	2	y	1.00	4	0	4	0	y	1.00	7	0	7	0	y	1.00	13	0	13	0	y	-	-	-	-	-	-	0.80	8	2	8	2	y	0.86	6	1	6	1	y	1.00	10	0	10	0	y	1.00	13	0	13	0	y	1.00	13	0	13	0	y	0.67	8	4	8	4	y	ENSMUSG00000030435.17	U2af2	chr7	protein_coding	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2
novel_NIR_18005	chr7	5083476	5083912	+	5083476	5086729	A3SS	ENSMUST00000045277.7	novel	0.00	0	11	0	11	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.29	2	5	2	5	y	ENSMUSG00000035203.17	Epn1	chr7	protein_coding	epsin 1
novel_NIR_18006	chr7	5083476	5086662	+	5083476	5086729	A3SS	ENSMUST00000045277.7	novel	0.00	0	11	0	11	n	0.20	1	4	1	4	n	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.08	1	11	1	11	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000035203.17	Epn1	chr7	protein_coding	epsin 1
novel_NIR_18007	chr7	5083637	5086729	+	5083476	5086729	A5SS	ENSMUST00000045277.7	novel	0.00	0	11	0	11	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	11	0	11	n	0.33	1	2	1	2	n	0.00	0	5	0	5	n	ENSMUSG00000035203.17	Epn1	chr7	protein_coding	epsin 1
novel_NIR_18008	chr7	5086981	5092782	+	5086981	5093002	A3SS	ENSMUST00000152083.2	novel	-	-	-	-	-	-	0.27	3	8	3	8	y	1.00	3	0	3	0	y	0.09	1	10	1	10	n	0.29	5	12	5	12	y	0.00	0	2	0	2	n	0.08	1	12	1	12	n	-	-	-	-	-	-	-	-	-	-	-	-	0.09	1	10	1	10	n	0.00	0	9	0	9	n	0.14	1	6	1	6	n	ENSMUSG00000035203.17	Epn1	chr7	protein_coding	epsin 1
novel_NIR_18009	chr7	5086981	5092975	+	5086981	5093002	A3SS	ENSMUST00000152083.2	novel	-	-	-	-	-	-	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.00	0	12	0	12	n	-	-	-	-	-	-	-	-	-	-	-	-	0.17	2	10	2	10	y	0.00	0	9	0	9	n	0.25	2	6	2	6	y	ENSMUSG00000035203.17	Epn1	chr7	protein_coding	epsin 1
novel_NIR_18010	chr7	5086981	5095840	+	5086981	5093002	A3SS&ES	ENSMUST00000152083.2	novel	1.00	1	0	1	0	n	0.11	1	8	1	8	n	1.00	1	0	1	0	n	0.00	0	10	0	10	n	0.40	8	12	8	12	y	0.33	1	2	1	2	n	0.29	5	12	5	12	y	1.00	2	0	2	0	y	-	-	-	-	-	-	0.17	2	10	2	10	y	0.00	0	9	0	9	n	0.00	0	6	0	6	n	ENSMUSG00000035203.17	Epn1	chr7	protein_coding	epsin 1
novel_NIR_18011	chr7	5093167	5095475	+	5093167	5097953	A3SS	ENSMUST00000152083.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035203.17	Epn1	chr7	protein_coding	epsin 1
novel_NIR_18012	chr7	5097230	5097953	+	5093167	5097953	A5SS	ENSMUST00000152083.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035203.17	Epn1	chr7	protein_coding	epsin 1
novel_NIR_18013	chr7	51512098	51514030	+	51512192	51514030	A5SS	ENSMUST00000129604.8	novel	0.29	2	5	2	5	y	0.00	0	2	0	2	n	0.60	3	2	3	2	y	0.00	0	4	0	4	n	1.00	3	0	3	0	y	0.67	6	3	6	3	y	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.43	3	4	3	4	y	0.25	2	6	2	6	y	1.00	3	0	3	0	y	ENSMUSG00000030498.16	Gas2	chr7	protein_coding	growth arrest specific 2
novel_NIR_18014	chr7	51512098	51514030	+	51513841	51514030	5pMXE	ENSMUST00000132335.2	novel	0.25	2	6	2	6	y	0.00	0	8	0	8	n	0.27	3	8	3	8	y	0.00	0	10	0	10	n	0.23	3	10	3	10	y	0.43	6	8	6	8	y	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.19	3	13	3	13	y	0.40	2	3	2	3	y	0.25	3	9	3	9	y	ENSMUSG00000030498.16	Gas2	chr7	protein_coding	growth arrest specific 2
novel_NIR_18015	chr7	51512192	51513746	+	51512192	51514030	A3SS	ENSMUST00000129604.8	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.50	4	4	4	4	y	1.00	2	0	2	0	y	0.25	1	3	1	3	n	0.45	5	6	5	6	y	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.45	5	6	5	6	y	1.00	1	0	1	0	n	ENSMUSG00000030498.16	Gas2	chr7	protein_coding	growth arrest specific 2
novel_NIR_18016	chr7	51512192	51513746	+	51512393	51513746	A5SS	ENSMUST00000107589.8	novel	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.44	4	5	4	5	y	0.20	2	8	2	8	y	1.00	1	0	1	0	n	0.50	5	5	5	5	y	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.71	5	2	5	2	y	0.10	1	9	1	9	n	ENSMUSG00000030498.16	Gas2	chr7	protein_coding	growth arrest specific 2
novel_NIR_18017	chr7	51512393	51514030	+	51512192	51514030	A5SS	ENSMUST00000129604.8	novel	0.38	3	5	3	5	y	0.60	3	2	3	2	y	0.60	3	2	3	2	y	0.64	7	4	7	4	y	-	-	-	-	-	-	0.25	1	3	1	3	n	0.60	9	6	9	6	y	1.00	3	0	3	0	y	0.50	6	6	6	6	y	0.73	11	4	11	4	y	0.40	4	6	4	6	y	1.00	5	0	5	0	y	ENSMUSG00000030498.16	Gas2	chr7	protein_coding	growth arrest specific 2
novel_NIR_18018	chr7	51512393	51514030	+	51512393;51513841	51513746;51514030	ES	ENSMUST00000107589.8	novel	0.33	3	6.0	3	6;6	y	0.33	3	6.0	3	4;8	y	0.38	3	5.0	3	2;8	y	0.48	7	7.5	7	5;10	y	0.00	0	9.0	0	8;10	n	0.20	1	4.0	1	0;8	n	0.49	9	9.5	9	5;14	y	0.38	3	5.0	3	5;5	y	0.50	6	6.0	6	3;9	y	0.59	11	7.5	11	2;13	y	0.62	4	2.5	4	2;3	y	0.36	5	9.0	5	9;9	y	ENSMUSG00000030498.16	Gas2	chr7	protein_coding	growth arrest specific 2
novel_NIR_18019	chr7	51512393	51514030	+	51513841	51514030	5pMXE	ENSMUST00000132335.2	novel	0.33	3	6	3	6	y	0.27	3	8	3	8	y	0.27	3	8	3	8	y	0.41	7	10	7	10	y	0.00	0	10	0	10	n	0.11	1	8	1	8	n	0.39	9	14	9	14	y	0.38	3	5	3	5	y	0.40	6	9	6	9	y	0.46	11	13	11	13	y	0.57	4	3	4	3	y	0.36	5	9	5	9	y	ENSMUSG00000030498.16	Gas2	chr7	protein_coding	growth arrest specific 2
novel_NIR_18020	chr7	51513185	51514030	+	51512192	51514030	A5SS	ENSMUST00000129604.8	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	1.00	2	0	2	0	y	ENSMUSG00000030498.16	Gas2	chr7	protein_coding	growth arrest specific 2
novel_NIR_18021	chr7	51513185	51514030	+	51513841	51514030	A5SS&ES	ENSMUST00000107589.8	novel	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.11	1	8	1	8	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.11	1	8	1	8	n	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.18	2	9	2	9	y	ENSMUSG00000030498.16	Gas2	chr7	protein_coding	growth arrest specific 2
novel_NIR_18022	chr7	51513395	51514030	+	51512192	51514030	A5SS	ENSMUST00000129604.8	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.14	1	6	1	6	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	-	-	-	-	-	-	ENSMUSG00000030498.16	Gas2	chr7	protein_coding	growth arrest specific 2
novel_NIR_18023	chr7	51513395	51514030	+	51513841	51514030	A5SS&ES	ENSMUST00000107589.8	novel	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.17	2	10	2	10	y	0.00	0	8	0	8	n	0.07	1	14	1	14	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	ENSMUSG00000030498.16	Gas2	chr7	protein_coding	growth arrest specific 2
novel_NIR_18024	chr7	51603049	51615331	+	51603049	51606125	3pMXE	ENSMUST00000145723.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000030498.16	Gas2	chr7	protein_coding	growth arrest specific 2
novel_NIR_18025	chr7	51603049	51615331	+	51603049	51615025	A3SS	ENSMUST00000107589.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000030498.16	Gas2	chr7	protein_coding	growth arrest specific 2
novel_NIR_18026	chr7	51653733	51655865	-	51653733	51655291	5pMXE	ENSMUST00000209193.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000074093.5	Svip	chr7	protein_coding	small VCP/p97-interacting protein
novel_NIR_18027	chr7	55594457	55612144	-	55594457	55594707	A5SS&ES	ENSMUST00000119201.8	novel	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	5	0	5	n	0.67	4	2	4	2	y	0.17	1	5	1	5	n	0.25	1	3	1	3	n	ENSMUSG00000030452.17	Nipa2	chr7	protein_coding	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)
novel_NIR_18028	chr7	55594457	55612144	-	55594457	55611948	A5SS	ENSMUST00000117812.8	novel	0.00	0	4	0	4	n	0.50	1	1	1	1	n	0.05	1	21	1	21	n	0.00	0	5	0	5	n	0.08	1	12	1	12	n	0.11	1	8	1	8	n	0.00	0	10	0	10	n	0.14	1	6	1	6	n	0.00	0	8	0	8	n	0.29	4	10	4	10	y	0.09	1	10	1	10	n	0.10	1	9	1	9	n	ENSMUSG00000030452.17	Nipa2	chr7	protein_coding	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)
novel_NIR_18029	chr7	55594457	55612144	-	55594457;55611320	55611200;55612144	ES	ENSMUST00000126604.8	novel	0.00	0	12.5	0	25;0	n	0.06	1	14.5	1	29;0	n	0.03	1	28.0	1	56;0	n	0.00	0	20.0	0	40;0	n	0.03	1	28.0	1	56;0	n	0.06	1	14.5	1	29;0	n	0.00	0	29.5	0	57;2	n	0.05	1	21.0	1	40;2	n	0.00	0	16.5	0	33;0	n	0.20	4	16.5	4	33;0	y	0.07	1	13.5	1	27;0	n	0.06	1	16.5	1	33;0	n	ENSMUSG00000030452.17	Nipa2	chr7	protein_coding	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)
novel_NIR_18030	chr7	55626732	55628942	+	55626732	55629179	A3SS	ENSMUST00000130189.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.60	3	2	3	2	y	0.00	0	2	0	2	n	0.67	4	2	4	2	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000087178.8	A230056P14Rik	chr7	lncRNA	RIKEN cDNA A230056P14 gene
novel_NIR_18031	chr7	55629079	55629179	+	55626732	55629179	A5SS	ENSMUST00000130189.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.25	1	3	1	3	n	ENSMUSG00000087178.8	A230056P14Rik	chr7	lncRNA	RIKEN cDNA A230056P14 gene
novel_NIR_18032	chr7	55695083	55699490	-	55692388	55699490	A3SS	ENSMUST00000206188.2	novel	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.60	3	2	3	2	y	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000108659.2	Gm34121	chr7	lncRNA	predicted gene, 34121
novel_NIR_18033	chr7	55700050	55717732	+	55700050;55700696	55700604;55717732	ES	ENSMUST00000076226.13	novel	0.00	0	3.5	0	0;7	n	0.67	2	1.0	2	0;2	y	0.00	0	5.0	0	1;9	n	0.00	0	2.0	0	0;4	n	0.00	0	6.0	0	3;9	n	0.00	0	2.5	0	0;5	n	0.00	0	2.5	0	1;4	n	0.00	0	5.5	0	8;3	n	0.00	0	1.0	0	0;2	n	0.00	0	6.5	0	9;4	n	0.00	0	0.5	0	0;1	n	0.00	0	4.0	0	4;4	n	ENSMUSG00000030451.17	Herc2	chr7	protein_coding	HECT and RLD domain containing E3 ubiquitin protein ligase 2
novel_NIR_18034	chr7	55700050	55717732	+	55700696	55717732	A5SS&ES	ENSMUST00000205653.2	novel	0.00	0	7	0	7	n	0.50	2	2	2	2	y	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000030451.17	Herc2	chr7	protein_coding	HECT and RLD domain containing E3 ubiquitin protein ligase 2
novel_NIR_18035	chr7	58879019	58921695	+	58879019	58890715	A3SS&ES	ENSMUST00000200781.4	novel	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.67	2	1	2	1	y	0.12	1	7	1	7	n	0.20	2	8	2	8	y	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.67	2	1	2	1	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.10	1	9	1	9	n	ENSMUSG00000025326.13	Ube3a	chr7	protein_coding	ubiquitin protein ligase E3A
novel_NIR_18036	chr7	58879019	58921695	+	58879019;58896965	58896921;58921695	ES	ENSMUST00000202945.4	novel	0.00	0	7.5	0	3;12	n	0.00	0	3.0	0	2;4	n	0.13	2	13.0	2	10;16	n	0.05	1	17.5	1	11;24	n	0.08	2	23.0	2	19;27	n	0.00	0	11.0	0	10;12	n	0.00	0	9.0	0	2;16	n	0.00	0	10.5	0	8;13	n	0.31	2	4.5	2	1;8	y	0.00	0	12.0	0	9;15	n	0.00	0	11.5	0	5;18	n	0.07	1	14.0	1	3;25	n	ENSMUSG00000025326.13	Ube3a	chr7	protein_coding	ubiquitin protein ligase E3A
novel_NIR_18037	chr7	58896965	58897040	+	58896965	58921891	A3SS	ENSMUST00000200781.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025326.13	Ube3a	chr7	protein_coding	ubiquitin protein ligase E3A
novel_NIR_18038	chr7	58896965	58897040	+	58896985	58897040	A5SS	ENSMUST00000201480.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025326.13	Ube3a	chr7	protein_coding	ubiquitin protein ligase E3A
novel_NIR_18039	chr7	58896965	58898280	+	58896965	58921891	A3SS	ENSMUST00000200781.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000025326.13	Ube3a	chr7	protein_coding	ubiquitin protein ligase E3A
novel_NIR_18040	chr7	58896965	58900636	+	58896965	58921891	A3SS	ENSMUST00000200781.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000025326.13	Ube3a	chr7	protein_coding	ubiquitin protein ligase E3A
novel_NIR_18041	chr7	58896965	58907558	+	58896965	58921695	A3SS	ENSMUST00000202945.4	novel	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.16	3	16	3	16	y	0.14	4	24	4	24	n	0.10	3	27	3	27	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.07	1	13	1	13	n	0.00	0	8	0	8	n	0.00	0	15	0	15	n	0.10	2	18	2	18	n	0.04	1	25	1	25	n	ENSMUSG00000025326.13	Ube3a	chr7	protein_coding	ubiquitin protein ligase E3A
novel_NIR_18042	chr7	58896965	58907558	+	58896965	58921891	A3SS	ENSMUST00000200781.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000025326.13	Ube3a	chr7	protein_coding	ubiquitin protein ligase E3A
novel_NIR_18043	chr7	58896965	58920482	+	58896965	58921891	A3SS	ENSMUST00000200781.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025326.13	Ube3a	chr7	protein_coding	ubiquitin protein ligase E3A
novel_NIR_18044	chr7	59643453	59645154	-	59632292	59645154	A3SS	ENSMUST00000179360.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000000948.17	Gm38393	chr7	protein_coding	predicted gene, 38393
novel_NIR_18045	chr7	6136170	6137641	-	6136170	6146061	A5SS	ENSMUST00000094870.3	novel	0.15	6	33	6	33	y	0.24	6	19	6	19	n	0.29	7	17	7	17	n	0.31	9	20	9	20	y	0.28	14	36	14	36	y	0.25	6	18	6	18	y	0.18	6	28	6	28	y	0.27	4	11	4	11	y	0.43	13	17	13	17	n	0.27	10	27	10	27	y	0.36	12	21	12	21	n	0.15	4	22	4	22	y	ENSMUSG00000046792.9	Zfp787	chr7	protein_coding	zinc finger protein 787
novel_NIR_18046	chr7	6136170;6137707	6137536;6146061	-	6136170	6146061	cassetteExon	ENSMUST00000094870.3	novel	0.01	0.5	33	1;0	33	n	0.05	1.0	19	0;2	19	n	0.23	5.0	17	5;5	17	y	0.05	1.0	20	2;0	20	n	0.00	0.0	36	0;0	36	n	0.00	0.0	18	0;0	18	n	0.00	0.0	28	0;0	28	n	0.00	0.0	11	0;0	11	n	0.15	3.0	17	0;6	17	n	0.02	0.5	27	1;0	27	n	0.11	2.5	21	1;4	21	n	0.00	0.0	22	0;0	22	n	ENSMUSG00000046792.9	Zfp787	chr7	protein_coding	zinc finger protein 787
novel_NIR_18047	chr7	6136170;6137707	6137641;6146061	-	6136170	6146061	cassetteExon	ENSMUST00000094870.3	novel	0.08	3.0	33	6;0	33	n	0.17	4.0	19	6;2	19	y	0.26	6.0	17	7;5	17	y	0.18	4.5	20	9;0	20	n	0.16	7.0	36	14;0	36	n	0.14	3.0	18	6;0	18	n	0.10	3.0	28	6;0	28	n	0.15	2.0	11	4;0	11	n	0.36	9.5	17	13;6	17	y	0.16	5.0	27	10;0	27	n	0.28	8.0	21	12;4	21	y	0.08	2.0	22	4;0	22	n	ENSMUSG00000046792.9	Zfp787	chr7	protein_coding	zinc finger protein 787
novel_NIR_18048	chr7	6146149	6157983	-	6146149	6153979	5pMXE	ENSMUST00000207331.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000046792.9	Zfp787	chr7	protein_coding	zinc finger protein 787
novel_NIR_18049	chr7	6146149	6157983	-	6146149	6158205	A5SS	ENSMUST00000207315.2	novel	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.17	1	5	1	5	n	ENSMUSG00000046792.9	Zfp787	chr7	protein_coding	zinc finger protein 787
novel_NIR_18050	chr7	6177100	6178490	+	6177100	6186789	A3SS	ENSMUST00000108567.9	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000044876.16	Zfp444	chr7	protein_coding	zinc finger protein 444
novel_NIR_18051	chr7	6177100	6178490	+	6177100	6191133	A3SS	ENSMUST00000208192.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000044876.16	Zfp444	chr7	protein_coding	zinc finger protein 444
novel_NIR_18052	chr7	6289653	6290869	+	6289653	6292288	A3SS	ENSMUST00000170776.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000054893.16	Zfp667	chr7	protein_coding	zinc finger protein 667
novel_NIR_18053	chr7	6289653	6290869	+	6289653	6292357	A3SS	ENSMUST00000086327.12	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.33	2	4	2	4	y	0.25	2	6	2	6	y	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000054893.16	Zfp667	chr7	protein_coding	zinc finger protein 667
novel_NIR_18054	chr7	63541545	63571367	-	63541545	63574418	A5SS	ENSMUST00000183817.2	novel	1.00	2	0	2	0	y	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000052040.11	Klf13	chr7	protein_coding	Kruppel-like factor 13
novel_NIR_18055	chr7	63541545	63571367	-	63541545	63585978	A5SS	ENSMUST00000185175.2	novel	0.29	2	5	2	5	y	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	6	0	6	n	0.20	1	4	1	4	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.33	2	4	2	4	y	0.43	3	4	3	4	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000052040.11	Klf13	chr7	protein_coding	Kruppel-like factor 13
novel_NIR_18056	chr7	63544764	63547822	+	63546307	63547822	5pMXE	ENSMUST00000183782.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.75	3	1	3	1	y	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000098708.8	Gm27252	chr7	lncRNA	predicted gene 27252
novel_NIR_18057	chr7	63544764	63547822	+	63547749	63547822	5pMXE	ENSMUST00000184360.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000098708.8	Gm27252	chr7	lncRNA	predicted gene 27252
novel_NIR_18058	chr7	63546959	63547822	+	63546307	63547822	A5SS	ENSMUST00000183782.8	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.82	27	6	27	6	y	1.00	1	0	1	0	n	0.57	4	3	4	3	y	0.92	11	1	11	1	y	0.40	2	3	2	3	y	1.00	2	0	2	0	y	1.00	6	0	6	0	y	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000098708.8	Gm27252	chr7	lncRNA	predicted gene 27252
novel_NIR_18059	chr7	63546959	63547822	+	63547749	63547822	5pMXE	ENSMUST00000184360.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	27	0	27	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	11	0	11	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000098708.8	Gm27252	chr7	lncRNA	predicted gene 27252
novel_NIR_18060	chr7	63547104	63547822	+	63546307	63547822	A5SS	ENSMUST00000183782.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.54	7	6	7	6	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000098708.8	Gm27252	chr7	lncRNA	predicted gene 27252
novel_NIR_18061	chr7	63547104	63547822	+	63547749	63547822	5pMXE	ENSMUST00000184360.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000098708.8	Gm27252	chr7	lncRNA	predicted gene 27252
novel_NIR_18062	chr7	63547237	63547822	+	63546307	63547822	A5SS	ENSMUST00000183782.8	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000098708.8	Gm27252	chr7	lncRNA	predicted gene 27252
novel_NIR_18063	chr7	63547237	63547822	+	63547749	63547822	5pMXE	ENSMUST00000184360.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000098708.8	Gm27252	chr7	lncRNA	predicted gene 27252
novel_NIR_18064	chr7	63547493	63547822	+	63546307	63547822	A5SS	ENSMUST00000183782.8	novel	-	-	-	-	-	-	0.88	7	1	7	1	y	0.96	163	6	163	6	y	1.00	6	0	6	0	y	0.75	9	3	9	3	y	0.98	45	1	45	1	y	0.88	21	3	21	3	y	1.00	31	0	31	0	y	1.00	6	0	6	0	y	0.90	9	1	9	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000098708.8	Gm27252	chr7	lncRNA	predicted gene 27252
novel_NIR_18065	chr7	63547493	63547822	+	63547749	63547822	5pMXE	ENSMUST00000184360.2	novel	-	-	-	-	-	-	1.00	7	0	7	0	y	1.00	163	0	163	0	y	1.00	6	0	6	0	y	1.00	9	0	9	0	y	1.00	45	0	45	0	y	1.00	21	0	21	0	y	1.00	31	0	31	0	y	1.00	6	0	6	0	y	1.00	9	0	9	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000098708.8	Gm27252	chr7	lncRNA	predicted gene 27252
novel_NIR_18066	chr7	63547912	63548092	+	63547912	63548181	A3SS	ENSMUST00000183782.8	novel	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.13	15	99	15	99	n	0.07	1	13	1	13	n	0.00	0	14	0	14	n	0.15	8	47	8	47	y	0.06	1	15	1	15	n	0.16	5	27	5	27	y	0.09	1	10	1	10	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	ENSMUSG00000098708.8	Gm27252	chr7	lncRNA	predicted gene 27252
novel_NIR_18067	chr7	63547912	63548290	+	63547912	63548181	A3SS	ENSMUST00000183782.8	novel	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	99	0	99	n	0.07	1	13	1	13	n	0.00	0	14	0	14	n	0.00	0	47	0	47	n	0.06	1	15	1	15	n	0.00	0	27	0	27	n	0.00	0	10	0	10	n	0.38	3	5	3	5	y	0.00	0	7	0	7	n	0.00	0	3	0	3	n	ENSMUSG00000098708.8	Gm27252	chr7	lncRNA	predicted gene 27252
novel_NIR_18068	chr7	63548266	63549049	+	63548353	63549049	A5SS	ENSMUST00000183782.8	novel	0.00	0	14	0	14	n	0.15	3	17	3	17	y	0.07	15	207	15	207	n	0.00	0	21	0	21	n	0.00	0	17	0	17	n	0.02	2	87	2	87	n	0.07	2	27	2	27	n	0.02	1	50	1	50	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.10	1	9	1	9	n	0.10	1	9	1	9	n	ENSMUSG00000098708.8	Gm27252	chr7	lncRNA	predicted gene 27252
novel_NIR_18069	chr7	63566843	63567040	+	63566843	63568988	A3SS	ENSMUST00000177638.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.70	64	28	64	28	n	1.00	3	0	3	0	y	0.70	7	3	7	3	n	0.71	68	28	68	28	n	0.83	5	1	5	1	n	0.66	25	13	25	13	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000095061.2	E030018B13Rik	chr7	protein_coding	RIKEN cDNA E030018B13 gene
novel_NIR_18070	chr7	63566843	63568870	+	63566843	63568988	A3SS	ENSMUST00000177638.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.64	49	28	49	28	y	-	-	-	-	-	-	0.25	1	3	1	3	n	0.49	27	28	27	28	y	0.75	3	1	3	1	y	0.62	21	13	21	13	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000095061.2	E030018B13Rik	chr7	protein_coding	RIKEN cDNA E030018B13 gene
novel_NIR_18071	chr7	63566843;63567104	63567012;63568988	+	63566843	63568988	cassetteExon	ENSMUST00000177638.2	novel	1.00	1.5	0	0;3	0	n	-	-	-	-	-	-	0.69	61.5	28	21;102	28	y	1.00	0.5	0	1;0	0	n	0.81	13.0	3	4;22	3	y	0.65	51.0	28	21;81	28	y	0.91	10.0	1	4;16	1	y	0.69	28.5	13	18;39	13	y	1.00	0.5	0	0;1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000095061.2	E030018B13Rik	chr7	protein_coding	RIKEN cDNA E030018B13 gene
novel_NIR_18072	chr7	63566843;63567104	63567040;63568988	+	63566843	63568988	cassetteExon	ENSMUST00000177638.2	novel	1.00	1.5	0	0;3	0	n	-	-	-	-	-	-	0.75	83.0	28	64;102	28	y	1.00	1.5	0	3;0	0	n	0.83	14.5	3	7;22	3	y	0.73	74.5	28	68;81	28	y	0.91	10.5	1	5;16	1	y	0.71	32.0	13	25;39	13	y	1.00	0.5	0	0;1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000095061.2	E030018B13Rik	chr7	protein_coding	RIKEN cDNA E030018B13 gene
novel_NIR_18073	chr7	63567104	63568988	+	63566843	63568988	A5SS	ENSMUST00000177638.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	0.78	102	28	102	28	n	-	-	-	-	-	-	0.88	22	3	22	3	n	0.74	81	28	81	28	n	0.94	16	1	16	1	n	0.75	39	13	39	13	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000095061.2	E030018B13Rik	chr7	protein_coding	RIKEN cDNA E030018B13 gene
novel_NIR_18074	chr7	63567716	63568988	+	63566843	63568988	A5SS	ENSMUST00000177638.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.10	3	28	3	28	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.22	8	28	8	28	n	0.75	3	1	3	1	y	0.00	0	13	0	13	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000095061.2	E030018B13Rik	chr7	protein_coding	RIKEN cDNA E030018B13 gene
novel_NIR_18075	chr7	63569176	63569706	+	63569176	63569701	A3SS	ENSMUST00000177638.2	novel	0.31	4	9	4	9	y	0.75	3	1	3	1	y	0.33	170	349	170	349	y	0.60	3	2	3	2	y	0.32	23	49	23	49	y	0.28	98	247	98	247	y	0.37	34	59	34	59	y	0.25	38	112	38	112	y	0.20	1	4	1	4	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.75	6	2	6	2	y	ENSMUSG00000095061.2	E030018B13Rik	chr7	protein_coding	RIKEN cDNA E030018B13 gene
novel_NIR_18076	chr7	63571484	63574418	-	63541545	63574418	A3SS	ENSMUST00000183817.2	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000052040.11	Klf13	chr7	protein_coding	Kruppel-like factor 13
novel_NIR_18077	chr7	6366916	6373958	+	6366346	6373958	A5SS	ENSMUST00000208763.2	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000055150.16	Zfp78	chr7	protein_coding	zinc finger protein 78
novel_NIR_18078	chr7	6366916	6373958	+	6366438	6373958	A5SS	ENSMUST00000208030.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000055150.16	Zfp78	chr7	protein_coding	zinc finger protein 78
novel_NIR_18079	chr7	6402649	6402783	+	6401761	6402783	A5SS	ENSMUST00000161855.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000093536.8	Smim17	chr7	protein_coding	small integral membrane protein 17
novel_NIR_18080	chr7	64042591	64050074	+	64042591	64048441	3pMXE	ENSMUST00000206138.2	novel	0.64	7	4	7	4	y	0.67	10	5	10	5	y	0.12	1	7	1	7	n	0.64	7	4	7	4	y	0.68	13	6	13	6	y	0.33	3	6	3	6	y	1.00	14	0	14	0	y	0.56	5	4	5	4	y	0.64	9	5	9	5	y	0.76	16	5	16	5	y	0.71	20	8	20	8	y	0.69	9	4	9	4	y	ENSMUSG00000033429.11	Mcee	chr7	protein_coding	methylmalonyl CoA epimerase
novel_NIR_18081	chr7	64042591	64050074	+	64042591	64061583	A3SS	ENSMUST00000206882.2	novel	0.41	7	10	7	10	y	0.34	10	19	10	19	y	0.10	1	9	1	9	n	0.24	7	22	7	22	y	0.43	13	17	13	17	y	0.21	3	11	3	11	y	0.39	14	22	14	22	y	0.29	5	12	5	12	y	0.24	9	28	9	28	y	0.38	16	26	16	26	y	0.43	20	26	20	26	y	0.24	9	29	9	29	y	ENSMUSG00000033429.11	Mcee	chr7	protein_coding	methylmalonyl CoA epimerase
novel_NIR_18082	chr7	64951031	64956118	-	64951031	64951881	5pMXE	ENSMUST00000132036.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030516.15	Tjp1	chr7	protein_coding	tight junction protein 1
novel_NIR_18083	chr7	65341038	65343051	+	65341038	65342810	A3SS	ENSMUST00000065574.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000078681.11	Tm2d3	chr7	protein_coding	TM2 domain containing 3
novel_NIR_18084	chr7	65343317	65344899	+	65343317	65343599	A3SS&ES	ENSMUST00000065574.9	novel	0.00	0	23	0	23	n	0.00	0	24	0	24	n	0.00	0	9	0	9	n	0.00	0	21	0	21	n	0.00	0	19	0	19	n	0.00	0	10	0	10	n	0.16	3	16	3	16	y	0.00	0	6	0	6	n	0.00	0	20	0	20	n	0.00	0	15	0	15	n	0.00	0	8	0	8	n	0.00	0	28	0	28	n	ENSMUSG00000078681.11	Tm2d3	chr7	protein_coding	TM2 domain containing 3
novel_NIR_18085	chr7	65343317	65344899	+	65343317	65343614	A3SS&ES	ENSMUST00000206837.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000078681.11	Tm2d3	chr7	protein_coding	TM2 domain containing 3
novel_NIR_18086	chr7	65343317	65344899	+	65343317	65344922	A3SS	ENSMUST00000206361.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000078681.11	Tm2d3	chr7	protein_coding	TM2 domain containing 3
novel_NIR_18087	chr7	65343317	65344899	+	65343317	65347444	A3SS	ENSMUST00000206934.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000078681.11	Tm2d3	chr7	protein_coding	TM2 domain containing 3
novel_NIR_18088	chr7	65452840	65453774	+	65452897	65453774	5pMXE	ENSMUST00000187848.2	novel	0.60	6	4	6	4	y	0.00	0	1	0	1	n	0.77	10	3	10	3	y	0.62	5	3	5	3	y	0.73	11	4	11	4	y	0.71	10	4	10	4	y	0.75	15	5	15	5	y	0.86	6	1	6	1	y	1.00	6	0	6	0	y	0.50	9	9	9	9	y	0.88	15	2	15	2	y	0.56	9	7	9	7	y	ENSMUSG00000100094.2	1810008I18Rik	chr7	lncRNA	RIKEN cDNA 1810008I18 gene
novel_NIR_18089	chr7	65454080	65455655	+	65454080	65455562	A3SS	ENSMUST00000187848.2	novel	0.14	28	170	28	170	n	0.14	30	178	30	178	n	0.11	51	410	51	410	n	0.14	32	203	32	203	n	0.12	43	317	43	317	n	0.11	23	196	23	196	n	0.13	34	231	34	231	n	0.12	28	211	28	211	n	0.15	64	365	64	365	y	0.16	81	417	81	417	y	0.24	104	327	104	327	y	0.18	128	599	128	599	y	ENSMUSG00000100094.2	1810008I18Rik	chr7	lncRNA	RIKEN cDNA 1810008I18 gene
novel_NIR_18090	chr7	65510985	65512570	-	65510985	65511593	5pMXE	ENSMUST00000176744.2	novel	0.27	4	11	4	11	y	0.47	14	16	14	16	y	0.30	3	7	3	7	y	0.18	6	27	6	27	y	0.12	3	21	3	21	n	0.00	0	6	0	6	n	0.26	8	23	8	23	y	0.09	1	10	1	10	n	0.09	1	10	1	10	n	0.19	7	30	7	30	y	0.23	6	20	6	20	y	0.07	1	14	1	14	n	ENSMUSG00000093405.2	Gm20684	chr7	lncRNA	predicted gene 20684
novel_NIR_18091	chr7	65776072	65820580	+	65775485	65820580	A5SS	ENSMUST00000036372.8	novel	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.25	2	6	2	6	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000032640.11	Chsy1	chr7	protein_coding	chondroitin sulfate synthase 1
novel_NIR_18092	chr7	65942172	65944542	-	65942169	65944542	A3SS	ENSMUST00000015277.14	novel	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.20	2	8	2	8	y	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.10	1	9	1	9	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	ENSMUSG00000015133.18	Lrrk1	chr7	protein_coding	leucine-rich repeat kinase 1
novel_NIR_18093	chr7	66297673	66309476	-	66297673	66304537	5pMXE	ENSMUST00000207785.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030509.18	Asb7	chr7	protein_coding	ankyrin repeat and SOCS box-containing 7
novel_NIR_18094	chr7	66297673	66309476	-	66297673	66309398	A5SS	ENSMUST00000131320.8	novel	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	19	0	19	n	0.38	3	5	3	5	y	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	ENSMUSG00000030509.18	Asb7	chr7	protein_coding	ankyrin repeat and SOCS box-containing 7
novel_NIR_18095	chr7	66326039	66327905	-	66310003	66327905	A3SS	ENSMUST00000131320.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.67	2	1	2	1	y	0.00	0	9	0	9	n	ENSMUSG00000030509.18	Asb7	chr7	protein_coding	ankyrin repeat and SOCS box-containing 7
novel_NIR_18096	chr7	66855146	66871992	-	66855146;66869928	66869246;66871992	ES	ENSMUST00000181631.2	novel	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1.0	0	0;2	n	0.00	0	1.0	0	0;2	n	-	-	-	-	-	-	0.50	1	1.0	1	0;2	n	-	-	-	-	-	-	0.00	0	1.0	0	0;2	n	ENSMUSG00000097527.3	1700112J16Rik	chr7	lncRNA	RIKEN cDNA 1700112J16 gene
novel_NIR_18097	chr7	66999669	67000011	-	66999669	67022461	A5SS	ENSMUST00000156690.8	novel	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	18	0	18	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.20	2	8	2	8	y	0.00	0	9	0	9	n	0.00	0	8	0	8	n	ENSMUSG00000030557.18	Mef2a	chr7	protein_coding	myocyte enhancer factor 2A
novel_NIR_18098	chr7	67164926	67267741	-	67181538	67267741	3pMXE	ENSMUST00000190770.7	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030556.14	Lrrc28	chr7	protein_coding	leucine rich repeat containing 28
novel_NIR_18099	chr7	67164926	67267741	-	67195216	67267741	3pMXE	ENSMUST00000190276.7	novel	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000030556.14	Lrrc28	chr7	protein_coding	leucine rich repeat containing 28
novel_NIR_18100	chr7	67164926	67267741	-	67245479	67267741	3pMXE	ENSMUST00000032775.12	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	26	0	26	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.22	2	7	2	7	y	0.00	0	11	0	11	n	0.00	0	17	0	17	n	ENSMUSG00000030556.14	Lrrc28	chr7	protein_coding	leucine rich repeat containing 28
novel_NIR_18101	chr7	6721555	6726781	-	6721555	6726186	5pMXE	ENSMUST00000143703.2	novel	1.00	5	0	5	0	y	1.00	7	0	7	0	y	1.00	8	0	8	0	y	1.00	6	0	6	0	y	1.00	12	0	12	0	y	0.78	7	2	7	2	y	1.00	8	0	8	0	y	1.00	14	0	14	0	y	1.00	2	0	2	0	y	0.67	6	3	6	3	y	1.00	2	0	2	0	y	1.00	6	0	6	0	y	ENSMUSG00000002265.18	Peg3	chr7	protein_coding	paternally expressed 3
novel_NIR_18102	chr7	6721555	6726781	-	6721555	6729489	A5SS	ENSMUST00000051209.11	novel	1.00	5	0	5	0	y	1.00	7	0	7	0	y	0.89	8	1	8	1	y	1.00	6	0	6	0	y	0.92	12	1	12	1	y	1.00	7	0	7	0	y	0.89	8	1	8	1	y	0.93	14	1	14	1	y	1.00	2	0	2	0	y	0.75	6	2	6	2	y	1.00	2	0	2	0	y	1.00	6	0	6	0	y	ENSMUSG00000002265.18	Peg3	chr7	protein_coding	paternally expressed 3
novel_NIR_18103	chr7	6721555	6728371	-	6721555	6726186	5pMXE	ENSMUST00000143703.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000002265.18	Peg3	chr7	protein_coding	paternally expressed 3
novel_NIR_18104	chr7	6721555;6728522	6728371;6729489	-	6721555	6729489	cassetteExon	ENSMUST00000051209.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1.0	1	0;2	1	n	-	-	-	-	-	-	0.50	1.0	1	1;1	1	n	1.00	2.5	0	2;3	0	y	0.00	0.0	1	0;0	1	n	0.50	1.0	1	1;1	1	n	1.00	1.0	0	0;2	0	n	0.00	0.0	2	0;0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000002265.18	Peg3	chr7	protein_coding	paternally expressed 3
novel_NIR_18105	chr7	67229498	67267741	-	67181538	67267741	A3SS	ENSMUST00000190770.7	novel	0.00	0	1	0	1	n	1.00	4	0	4	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030556.14	Lrrc28	chr7	protein_coding	leucine rich repeat containing 28
novel_NIR_18106	chr7	67229498	67267741	-	67195216	67267741	A3SS	ENSMUST00000190276.7	novel	0.00	0	4	0	4	n	0.40	4	6	4	6	y	0.38	5	8	5	8	y	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.22	2	7	2	7	y	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000030556.14	Lrrc28	chr7	protein_coding	leucine rich repeat containing 28
novel_NIR_18107	chr7	67229498	67267741	-	67209812	67267741	A3SS	ENSMUST00000053950.10	novel	0.00	0	18	0	18	n	0.18	4	18	4	18	y	0.16	5	26	5	26	y	0.00	0	20	0	20	n	0.00	0	28	0	28	n	0.18	2	9	2	9	n	0.08	2	22	2	22	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.00	0	22	0	22	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	ENSMUSG00000030556.14	Lrrc28	chr7	protein_coding	leucine rich repeat containing 28
novel_NIR_18108	chr7	67229498	67267741	-	67245479	67267741	3pMXE	ENSMUST00000032775.12	novel	0.00	0	4	0	4	n	0.67	4	2	4	2	y	0.16	5	26	5	26	y	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.11	2	16	2	16	n	0.15	2	11	2	11	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	17	0	17	n	ENSMUSG00000030556.14	Lrrc28	chr7	protein_coding	leucine rich repeat containing 28
novel_NIR_18109	chr7	6728522	6729489	-	6721555	6729489	A3SS	ENSMUST00000051209.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	3	0	3	0	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000002265.18	Peg3	chr7	protein_coding	paternally expressed 3
novel_NIR_18110	chr7	6728522	6729489	-	6721847	6729489	A3SS	ENSMUST00000239104.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000002265.18	Peg3	chr7	protein_coding	paternally expressed 3
novel_NIR_18111	chr7	67297593	67310640	+	67297593	67298892	3pMXE	ENSMUST00000125839.2	novel	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030555.17	Ttc23	chr7	protein_coding	tetratricopeptide repeat domain 23
novel_NIR_18112	chr7	67297593	67310640	+	67297593	67316911	A3SS	ENSMUST00000126093.8	novel	0.00	0	8	0	8	n	0.40	4	6	4	6	y	0.29	2	5	2	5	y	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000030555.17	Ttc23	chr7	protein_coding	tetratricopeptide repeat domain 23
novel_NIR_18113	chr7	67297593	67328642	+	67297593	67298892	3pMXE	ENSMUST00000125839.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030555.17	Ttc23	chr7	protein_coding	tetratricopeptide repeat domain 23
novel_NIR_18114	chr7	67297593;67310748	67310640;67312075	+	67297593	67312075	cassetteExon	ENSMUST00000133710.8	novel	1.00	7.0	0	0;14	0	n	0.78	14.0	4	4;24	4	y	0.42	5.0	7	2;8	7	y	0.84	26.5	5	0;53	5	n	0.57	17.0	13	0;34	13	n	0.33	3.0	6	0;6	6	n	0.82	13.5	3	0;27	3	n	0.65	7.5	4	0;15	4	n	1.00	13.5	0	0;27	0	n	0.75	30.5	10	0;61	10	n	0.57	12.0	9	0;24	9	n	0.59	10.0	7	0;20	7	n	ENSMUSG00000030555.17	Ttc23	chr7	protein_coding	tetratricopeptide repeat domain 23
novel_NIR_18115	chr7	67301719	67310640	+	67301719	67310431	3pMXE	ENSMUST00000135236.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	6	0	6	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030555.17	Ttc23	chr7	protein_coding	tetratricopeptide repeat domain 23
novel_NIR_18116	chr7	67305317	67316911	+	67297593	67316911	A5SS	ENSMUST00000126093.8	novel	0.27	3	8	3	8	y	0.40	4	6	4	6	y	0.62	8	5	8	5	y	0.43	6	8	6	8	y	0.38	5	8	5	8	y	0.00	0	5	0	5	n	0.30	3	7	3	7	y	0.08	1	12	1	12	n	0.00	0	5	0	5	n	0.54	7	6	7	6	y	0.89	8	1	8	1	y	0.00	0	4	0	4	n	ENSMUSG00000030555.17	Ttc23	chr7	protein_coding	tetratricopeptide repeat domain 23
novel_NIR_18117	chr7	67305317	67316911	+	67299106	67316911	A5SS	ENSMUST00000130681.8	novel	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	8	0	8	0	y	1.00	6	0	6	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	7	0	7	0	y	1.00	8	0	8	0	y	-	-	-	-	-	-	ENSMUSG00000030555.17	Ttc23	chr7	protein_coding	tetratricopeptide repeat domain 23
novel_NIR_18118	chr7	67305317	67316911	+	67305153	67316911	A5SS	ENSMUST00000153475.8	novel	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	8	0	8	0	y	1.00	6	0	6	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	7	0	7	0	y	1.00	8	0	8	0	y	-	-	-	-	-	-	ENSMUSG00000030555.17	Ttc23	chr7	protein_coding	tetratricopeptide repeat domain 23
novel_NIR_18119	chr7	67305317	67316911	+	67305317;67312274	67312075;67316911	ES	ENSMUST00000107470.2	novel	0.09	3	31.0	3	3;59	n	0.13	4	26.0	4	0;52	n	0.41	8	11.5	8	3;20	y	0.14	6	38.0	6	0;76	n	0.13	5	34.5	5	2;67	n	0.00	0	11.5	0	1;22	n	0.07	3	40.5	3	3;78	n	0.05	1	17.5	1	4;31	n	0.00	0	20.5	0	0;41	n	0.12	7	50.5	7	3;98	n	0.22	8	29.0	8	1;57	y	0.00	0	30.5	0	1;60	n	ENSMUSG00000030555.17	Ttc23	chr7	protein_coding	tetratricopeptide repeat domain 23
novel_NIR_18120	chr7	67305317	67316911	+	67312274	67316911	A5SS&ES	ENSMUST00000133710.8	novel	0.05	3	59	3	59	n	0.07	4	52	4	52	n	0.29	8	20	8	20	y	0.07	6	76	6	76	n	0.07	5	67	5	67	n	0.00	0	22	0	22	n	0.04	3	78	3	78	n	0.03	1	31	1	31	n	0.00	0	41	0	41	n	0.07	7	98	7	98	n	0.12	8	57	8	57	n	0.00	0	60	0	60	n	ENSMUSG00000030555.17	Ttc23	chr7	protein_coding	tetratricopeptide repeat domain 23
novel_NIR_18121	chr7	67305317	67316911	+	67316691	67316911	5pMXE	ENSMUST00000145348.2	novel	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	8	0	8	0	y	1.00	6	0	6	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	7	0	7	0	y	1.00	8	0	8	0	y	-	-	-	-	-	-	ENSMUSG00000030555.17	Ttc23	chr7	protein_coding	tetratricopeptide repeat domain 23
novel_NIR_18122	chr7	67310748	67312075	+	67297593	67312075	A5SS	ENSMUST00000133710.8	novel	1.00	14	0	14	0	y	0.86	24	4	24	4	n	0.53	8	7	8	7	n	0.91	53	5	53	5	y	0.72	34	13	34	13	y	0.50	6	6	6	6	y	0.90	27	3	27	3	y	0.79	15	4	15	4	y	1.00	27	0	27	0	n	0.86	61	10	61	10	y	0.73	24	9	24	9	y	0.74	20	7	20	7	y	ENSMUSG00000030555.17	Ttc23	chr7	protein_coding	tetratricopeptide repeat domain 23
novel_NIR_18123	chr7	67310748	67312075	+	67305317	67312075	A5SS	ENSMUST00000107470.2	novel	0.82	14	3	14	3	y	1.00	24	0	24	0	n	0.73	8	3	8	3	y	1.00	53	0	53	0	n	0.94	34	2	34	2	y	0.86	6	1	6	1	n	0.90	27	3	27	3	y	0.79	15	4	15	4	y	1.00	27	0	27	0	y	0.95	61	3	61	3	y	0.96	24	1	24	1	y	0.95	20	1	20	1	y	ENSMUSG00000030555.17	Ttc23	chr7	protein_coding	tetratricopeptide repeat domain 23
novel_NIR_18124	chr7	67329068	67333563	+	67329068	67347972	A3SS	ENSMUST00000137919.2	novel	0.00	0	7	0	7	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000030555.17	Ttc23	chr7	protein_coding	tetratricopeptide repeat domain 23
novel_NIR_18125	chr7	67888942	67894882	-	67888942	67908985	A5SS	ENSMUST00000207874.2	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000030553.4	Pgpep1l	chr7	protein_coding	pyroglutamyl-peptidase I-like
novel_NIR_18126	chr7	67888942	67894882	-	67888942	67913892	A5SS	ENSMUST00000032770.4	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030553.4	Pgpep1l	chr7	protein_coding	pyroglutamyl-peptidase I-like
novel_NIR_18127	chr7	67888942	67899215	-	67888942	67908985	A5SS	ENSMUST00000207874.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.50	1	1	1	1	n	0.67	2	1	2	1	y	ENSMUSG00000030553.4	Pgpep1l	chr7	protein_coding	pyroglutamyl-peptidase I-like
novel_NIR_18128	chr7	67888942	67899215	-	67888942	67913892	A5SS	ENSMUST00000032770.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000030553.4	Pgpep1l	chr7	protein_coding	pyroglutamyl-peptidase I-like
novel_NIR_18129	chr7	67888942	67902377	-	67888942	67913892	A5SS	ENSMUST00000032770.4	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030553.4	Pgpep1l	chr7	protein_coding	pyroglutamyl-peptidase I-like
novel_NIR_18130	chr7	67902421	67908985	-	67888942	67908985	A3SS	ENSMUST00000207874.2	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000030553.4	Pgpep1l	chr7	protein_coding	pyroglutamyl-peptidase I-like
novel_NIR_18131	chr7	67919982	67924758	-	67919982	67924906	A5SS	ENSMUST00000124813.2	novel	0.00	0	14	0	14	n	0.12	2	15	2	15	n	0.00	0	4	0	4	n	0.00	0	15	0	15	n	0.16	3	16	3	16	y	0.00	0	3	0	3	n	0.15	2	11	2	11	y	0.00	0	5	0	5	n	0.00	0	23	0	23	n	0.07	3	40	3	40	n	0.07	2	28	2	28	n	0.00	0	34	0	34	n	ENSMUSG00000086628.8	Gm16157	chr7	lncRNA	predicted gene 16157
novel_NIR_18132	chr7	67925054	67926265	-	67925085	67926265	A3SS	ENSMUST00000124813.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000086628.8	Gm16157	chr7	lncRNA	predicted gene 16157
novel_NIR_18133	chr7	67925085	67925734	-	67925085	67926265	A5SS	ENSMUST00000124813.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.67	4	2	4	2	y	-	-	-	-	-	-	ENSMUSG00000086628.8	Gm16157	chr7	lncRNA	predicted gene 16157
novel_NIR_18134	chr7	67925085	67925753	-	67925085	67926265	A5SS	ENSMUST00000124813.2	novel	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	1	0	1	0	n	0.90	9	1	9	1	y	1.00	9	0	9	0	y	-	-	-	-	-	-	1.00	12	0	12	0	y	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	15	0	15	0	y	0.78	7	2	7	2	y	1.00	11	0	11	0	y	ENSMUSG00000086628.8	Gm16157	chr7	lncRNA	predicted gene 16157
novel_NIR_18135	chr7	67954399	67978970	+	67954399	67971568	A3SS&ES	ENSMUST00000153805.8	novel	0.06	2	31	2	31	n	0.07	1	13	1	13	n	0.06	2	29	2	29	n	0.07	4	56	4	56	n	0.00	0	36	0	36	n	0.00	0	18	0	18	n	0.00	0	26	0	26	n	0.22	5	18	5	18	y	0.03	1	35	1	35	n	0.00	0	41	0	41	n	0.00	0	21	0	21	n	0.19	7	29	7	29	y	ENSMUSG00000074071.12	Fam169b	chr7	protein_coding	family with sequence similarity 169, member B
novel_NIR_18136	chr7	67954399	67978970	+	67954399;67971653	67971568;67978970	ES	ENSMUST00000125685.9	novel	0.06	2	29.5	2	31;28	n	0.05	1	18.5	1	13;24	n	0.08	2	22.5	2	29;16	n	0.07	4	52.0	4	56;48	n	0.00	0	26.0	0	36;16	n	0.00	0	19.0	0	18;20	n	0.00	0	27.0	0	26;28	n	0.29	5	12.5	5	18;7	y	0.04	1	25.0	1	35;15	n	0.00	0	42.0	0	41;43	n	0.00	0	24.5	0	21;28	n	0.19	7	30.5	7	29;32	y	ENSMUSG00000074071.12	Fam169b	chr7	protein_coding	family with sequence similarity 169, member B
novel_NIR_18137	chr7	67954399	67999982	+	67954399;67971653	67971568;67999982	ES	ENSMUST00000153805.8	novel	0.06	1	16.0	1	31;1	n	0.13	1	6.5	1	13;0	n	0.26	5	14.5	5	29;0	y	0.03	1	28.0	1	56;0	n	0.05	1	18.0	1	36;0	n	0.00	0	9.0	0	18;0	n	0.13	2	13.0	2	26;0	n	0.10	1	9.5	1	18;1	n	0.10	2	18.0	2	35;1	n	0.12	3	22.0	3	41;3	n	0.00	0	11.0	0	21;1	n	0.29	6	15.0	6	29;1	y	ENSMUSG00000074071.12	Fam169b	chr7	protein_coding	family with sequence similarity 169, member B
novel_NIR_18138	chr7	67971653	67975062	+	67971653	67999982	A3SS	ENSMUST00000153805.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	ENSMUSG00000074071.12	Fam169b	chr7	protein_coding	family with sequence similarity 169, member B
novel_NIR_18139	chr7	67988253	67988728	+	67980932	67988728	A5SS	ENSMUST00000153458.3	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000074071.12	Fam169b	chr7	protein_coding	family with sequence similarity 169, member B
novel_NIR_18140	chr7	67999889	67999982	+	67971653	67999982	A5SS	ENSMUST00000153805.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000074071.12	Fam169b	chr7	protein_coding	family with sequence similarity 169, member B
novel_NIR_18141	chr7	67999889	67999982	+	67988861	67999982	A5SS	ENSMUST00000153458.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000074071.12	Fam169b	chr7	protein_coding	family with sequence similarity 169, member B
novel_NIR_18142	chr7	70008038	70008238	-	70008038	70009562	A5SS	ENSMUST00000208081.2	novel	0.00	0	7	0	7	n	0.19	3	13	3	13	y	-	-	-	-	-	-	0.18	3	14	3	14	y	0.25	2	6	2	6	y	-	-	-	-	-	-	0.00	0	14	0	14	n	0.40	2	3	2	3	y	0.00	0	7	0	7	n	0.11	2	16	2	16	n	0.22	2	7	2	7	y	0.25	3	9	3	9	y	ENSMUSG00000030551.15	Nr2f2	chr7	protein_coding	nuclear receptor subfamily 2, group F, member 2
novel_NIR_18143	chr7	70008038	70008238	-	70008038	70015841	A5SS	ENSMUST00000089565.6	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.50	3	3	3	3	y	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.33	2	4	2	4	y	1.00	2	0	2	0	y	0.75	3	1	3	1	y	ENSMUSG00000030551.15	Nr2f2	chr7	protein_coding	nuclear receptor subfamily 2, group F, member 2
novel_NIR_18144	chr7	7120911	7122031	-	7120911	7122371	A5SS	ENSMUST00000056246.8	novel	0.00	0	10	0	10	n	0.12	1	7	1	7	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.27	3	8	3	8	y	0.00	0	2	0	2	n	0.11	1	8	1	8	n	ENSMUSG00000062116.11	Zfp954	chr7	protein_coding	zinc finger protein 954
novel_NIR_18145	chr7	7122200	7122371	-	7120911	7122371	A3SS	ENSMUST00000056246.8	novel	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.18	3	14	3	14	y	0.00	0	4	0	4	n	0.19	3	13	3	13	y	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	ENSMUSG00000062116.11	Zfp954	chr7	protein_coding	zinc finger protein 954
novel_NIR_18146	chr7	71861408	71863692	-	71861473	71863692	A3SS	ENSMUST00000079323.8	novel	0.11	1	8	1	8	n	0.42	5	7	5	7	y	0.03	1	37	1	37	n	0.16	3	16	3	16	y	0.24	6	19	6	19	y	0.04	1	23	1	23	n	0.00	0	19	0	19	n	0.00	0	20	0	20	n	0.22	2	7	2	7	y	0.14	3	19	3	19	n	0.00	0	15	0	15	n	0.00	0	21	0	21	n	ENSMUSG00000032776.10	Mctp2	chr7	protein_coding	multiple C2 domains, transmembrane 2
novel_NIR_18147	chr7	71909379	71950086	-	71909379	71956219	A5SS	ENSMUST00000079323.8	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.15	2	11	2	11	y	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	ENSMUSG00000032776.10	Mctp2	chr7	protein_coding	multiple C2 domains, transmembrane 2
novel_NIR_18148	chr7	71955954	71956219	-	71909379	71956219	A3SS	ENSMUST00000079323.8	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.11	1	8	1	8	n	0.08	1	12	1	12	n	0.14	1	6	1	6	n	0.00	0	7	0	7	n	0.12	1	7	1	7	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.22	2	7	2	7	y	ENSMUSG00000032776.10	Mctp2	chr7	protein_coding	multiple C2 domains, transmembrane 2
novel_NIR_18149	chr7	7257672	7270218	-	7237501	7270218	A3SS	ENSMUST00000209788.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.43	3	4	3	4	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000110105.2	Gm45844	chr7	protein_coding	predicted gene 45844
novel_NIR_18150	chr7	7257672	7270218	-	7243206	7270218	A3SS	ENSMUST00000209833.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.38	3	5	3	5	y	0.00	0	10	0	10	n	0.00	0	7	0	7	n	ENSMUSG00000110105.2	Gm45844	chr7	protein_coding	predicted gene 45844
novel_NIR_18151	chr7	7257672	7270218	-	7247293	7270218	A3SS	ENSMUST00000210333.2	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000110105.2	Gm45844	chr7	protein_coding	predicted gene 45844
novel_NIR_18152	chr7	7257672	7270218	-	7269076	7270218	3pMXE	ENSMUST00000174801.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000098900.3	Gm18190	chr7	transcribed_unprocessed_pseudogene	predicted gene, 18190
novel_NIR_18153	chr7	7257672	7270218	-	7269881	7270218	3pMXE	ENSMUST00000209485.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000098900.3	Gm18190	chr7	transcribed_unprocessed_pseudogene	predicted gene, 18190
novel_NIR_18154	chr7	7270304	7270779	-	7270304	7271039	A5SS	ENSMUST00000209833.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.22	2	7	2	7	y	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000110105.2	Gm45844	chr7	protein_coding	predicted gene 45844
novel_NIR_18155	chr7	7270304	7270779	-	7270304;7270640	7270476;7270779	ES	ENSMUST00000209485.2	novel	0.00	0	5.5	0	6;5	n	0.00	0	4.0	0	3;5	n	0.00	0	0.5	0	1;0	n	0.00	0	5.0	0	6;4	n	0.27	2	5.5	2	6;5	y	0.00	0	1.0	0	2;0	n	0.14	1	6.0	1	6;6	n	0.00	0	2.5	0	5;0	n	0.00	0	1.0	0	1;1	n	0.00	0	5.0	0	8;2	n	0.00	0	4.5	0	4;5	n	0.00	0	6.5	0	11;2	n	ENSMUSG00000098900.3	Gm18190	chr7	transcribed_unprocessed_pseudogene	predicted gene, 18190
novel_NIR_18156	chr7	7299068	7299333	-	7299068	7301691	A5SS	ENSMUST00000210594.2	novel	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.33	2	4	2	4	y	0.00	0	7	0	7	n	1.00	1	0	1	0	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.25	2	6	2	6	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	ENSMUSG00000000605.10	Clcn4	chr7	protein_coding	chloride channel, voltage-sensitive 4
novel_NIR_18157	chr7	7301835	7302199	-	7301835	7302089	A5SS	ENSMUST00000210594.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000000605.10	Clcn4	chr7	protein_coding	chloride channel, voltage-sensitive 4
novel_NIR_18158	chr7	7301835	7302199	-	7301835	7302240	A5SS	ENSMUST00000000619.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	3	0	3	0	y	0.00	0	1	0	1	n	ENSMUSG00000000605.10	Clcn4	chr7	protein_coding	chloride channel, voltage-sensitive 4
novel_NIR_18159	chr7	7301835	7302199	-	7301835	7303650	A5SS	ENSMUST00000210809.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000000605.10	Clcn4	chr7	protein_coding	chloride channel, voltage-sensitive 4
novel_NIR_18160	chr7	73079748	73091334	-	73079748	73085483	A5SS&ES	ENSMUST00000173785.2	novel	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.03	1	28	1	28	n	0.00	0	22	0	22	n	0.00	0	36	0	36	n	0.00	0	21	0	21	n	0.00	0	18	0	18	n	0.15	2	11	2	11	y	0.00	0	10	0	10	n	0.00	0	26	0	26	n	0.00	0	13	0	13	n	0.00	0	38	0	38	n	ENSMUSG00000078671.12	Chd2	chr7	protein_coding	chromodomain helicase DNA binding protein 2
novel_NIR_18161	chr7	73079748	73091334	-	73079748;73085726	73085483;73091334	ES	ENSMUST00000169922.9	novel	0.00	0	18.0	0	16;20	n	0.00	0	5.5	0	7;4	n	0.03	1	33.0	1	28;38	n	0.00	0	19.0	0	22;16	n	0.00	0	33.5	0	36;31	n	0.00	0	14.5	0	21;8	n	0.00	0	19.0	0	18;20	n	0.15	2	11.5	2	11;12	y	0.00	0	18.0	0	10;26	n	0.00	0	26.0	0	26;26	n	0.00	0	15.0	0	13;17	n	0.00	0	33.5	0	38;29	n	ENSMUSG00000078671.12	Chd2	chr7	protein_coding	chromodomain helicase DNA binding protein 2
novel_NIR_18162	chr7	73099039	73102847	-	73099039;73101587	73101447;73102847	ES	ENSMUST00000169922.9	novel	0.15	2	11.5	2	14;9	y	0.00	0	8.0	0	9;7	n	0.12	3	21.0	3	19;23	n	0.05	1	18.5	1	18;19	n	0.00	0	27.5	0	24;31	n	0.00	0	14.5	0	15;14	n	0.00	0	13.5	0	13;14	n	0.00	0	12.0	0	16;8	n	0.05	1	17.5	1	17;18	n	0.05	1	19.5	1	26;13	n	0.05	1	17.5	1	21;14	n	0.00	0	30.0	0	36;24	n	ENSMUSG00000078671.12	Chd2	chr7	protein_coding	chromodomain helicase DNA binding protein 2
novel_NIR_18163	chr7	73099039	73102847	-	73101638	73102847	3pMXE	ENSMUST00000038366.9	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000078671.12	Chd2	chr7	protein_coding	chromodomain helicase DNA binding protein 2
novel_NIR_18164	chr7	75264796	75264875	+	75264796	75313160	A3SS	ENSMUST00000207750.2	novel	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	23	0	23	n	0.00	0	28	0	28	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	20	0	20	n	0.00	0	13	0	13	n	0.00	0	19	0	19	n	0.17	2	10	2	10	y	0.06	1	17	1	17	n	ENSMUSG00000066406.17	Akap13	chr7	protein_coding	A kinase (PRKA) anchor protein 13
novel_NIR_18165	chr7	75264796	75264875	+	75264796	75326854	A3SS	ENSMUST00000208456.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	1.00	1	0	1	0	n	ENSMUSG00000066406.17	Akap13	chr7	protein_coding	A kinase (PRKA) anchor protein 13
novel_NIR_18166	chr7	75375160	75375719	+	75375160	75375716	A3SS	ENSMUST00000207750.2	novel	0.05	1	19	1	19	n	0.18	3	14	3	14	y	0.26	7	20	7	20	y	0.06	1	17	1	17	n	0.12	3	22	3	22	n	0.20	4	16	4	16	y	0.00	0	18	0	18	n	0.07	1	14	1	14	n	0.11	1	8	1	8	n	0.05	1	20	1	20	n	0.00	0	10	0	10	n	0.21	5	19	5	19	y	ENSMUSG00000066406.17	Akap13	chr7	protein_coding	A kinase (PRKA) anchor protein 13
novel_NIR_18167	chr7	75375160	75375722	+	75375160	75375716	A3SS	ENSMUST00000207750.2	novel	0.00	0	19	0	19	n	0.00	0	14	0	14	n	0.13	3	20	3	20	n	0.19	4	17	4	17	y	0.08	2	22	2	22	n	0.00	0	16	0	16	n	0.25	6	18	6	18	y	0.07	1	14	1	14	n	0.00	0	8	0	8	n	0.09	2	20	2	20	n	0.17	2	10	2	10	y	0.10	2	19	2	19	n	ENSMUSG00000066406.17	Akap13	chr7	protein_coding	A kinase (PRKA) anchor protein 13
novel_NIR_18168	chr7	75393757	75396511	+	75393757	75396508	A3SS	ENSMUST00000207750.2	novel	0.34	11	21	11	21	y	0.19	3	13	3	13	y	0.00	0	40	0	40	n	0.33	14	28	14	28	y	0.00	0	33	0	33	n	0.18	3	14	3	14	y	0.16	5	27	5	27	y	0.00	0	20	0	20	n	0.00	0	16	0	16	n	0.00	0	24	0	24	n	0.33	7	14	7	14	y	0.43	15	20	15	20	y	ENSMUSG00000066406.17	Akap13	chr7	protein_coding	A kinase (PRKA) anchor protein 13
novel_NIR_18169	chr7	75498221	75501029	+	75498221	75515085	A3SS	ENSMUST00000171155.4	novel	0.18	2	9	2	9	y	0.00	0	3	0	3	n	0.00	0	48	0	48	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	ENSMUSG00000055652.15	Klhl25	chr7	protein_coding	kelch-like 25
novel_NIR_18170	chr7	75498221	75501029	+	75498221	75522446	A3SS	ENSMUST00000206418.2	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000055652.15	Klhl25	chr7	protein_coding	kelch-like 25
novel_NIR_18171	chr7	75498221	75512665	+	75498221	75522446	A3SS	ENSMUST00000206418.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000055652.15	Klhl25	chr7	protein_coding	kelch-like 25
novel_NIR_18172	chr7	75512777	75515085	+	75498221	75515085	A5SS	ENSMUST00000171155.4	novel	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.06	3	48	3	48	n	0.17	2	10	2	10	y	0.16	3	16	3	16	n	0.00	0	9	0	9	n	0.12	1	7	1	7	n	0.17	3	15	3	15	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.23	3	10	3	10	n	0.00	0	16	0	16	n	ENSMUSG00000055652.15	Klhl25	chr7	protein_coding	kelch-like 25
novel_NIR_18173	chr7	75512777	75515085	+	75498232	75515085	A5SS	ENSMUST00000092073.11	novel	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.11	3	24	3	24	n	0.18	2	9	2	9	y	0.23	3	10	3	10	y	0.00	0	5	0	5	n	0.17	1	5	1	5	n	0.33	3	6	3	6	y	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.30	3	7	3	7	y	0.00	0	1	0	1	n	ENSMUSG00000055652.15	Klhl25	chr7	protein_coding	kelch-like 25
novel_NIR_18174	chr7	75512777	75515085	+	75498324	75515085	A5SS	ENSMUST00000205887.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000055652.15	Klhl25	chr7	protein_coding	kelch-like 25
novel_NIR_18175	chr7	78473008	78477320	-	78473008	78483859	A5SS	ENSMUST00000138062.3	novel	0.75	6	2	6	2	n	1.00	1	0	1	0	n	1.00	5	0	5	0	n	1.00	4	0	4	0	n	0.78	7	2	7	2	n	0.00	0	1	0	1	n	0.67	6	3	6	3	n	1.00	5	0	5	0	y	1.00	1	0	1	0	n	0.67	4	2	4	2	y	1.00	4	0	4	0	y	1.00	7	0	7	0	n	ENSMUSG00000030610.14	Det1	chr7	protein_coding	de-etiolated homolog 1 (Arabidopsis)
novel_NIR_18176	chr7	78473008;78477412	78477320;78483859	-	78473008	78483859	cassetteExon	ENSMUST00000138062.3	novel	0.67	4.0	2	6;2	2	y	1.00	0.5	0	1;0	0	n	1.00	3.0	0	5;1	0	n	1.00	2.5	0	4;1	0	n	0.67	4.0	2	7;1	2	n	0.00	0.0	1	0;0	1	n	0.57	4.0	3	6;2	3	y	1.00	2.5	0	5;0	0	n	1.00	0.5	0	1;0	0	n	0.50	2.0	2	4;0	2	n	1.00	2.0	0	4;0	0	n	1.00	4.0	0	7;1	0	n	ENSMUSG00000030610.14	Det1	chr7	protein_coding	de-etiolated homolog 1 (Arabidopsis)
novel_NIR_18177	chr7	78484050	78484931	-	78484050	78489753	A5SS	ENSMUST00000107431.3	novel	0.07	1	14	1	14	n	0.07	1	14	1	14	n	0.21	3	11	3	11	y	0.00	0	10	0	10	n	0.19	4	17	4	17	y	0.00	0	15	0	15	n	0.00	0	20	0	20	n	0.10	1	9	1	9	n	0.00	0	12	0	12	n	0.05	1	18	1	18	n	0.00	0	15	0	15	n	0.07	1	14	1	14	n	ENSMUSG00000030610.14	Det1	chr7	protein_coding	de-etiolated homolog 1 (Arabidopsis)
novel_NIR_18178	chr7	78484050	78485387	-	78484050	78489753	A5SS	ENSMUST00000107431.3	novel	0.12	2	14	2	14	n	0.00	0	14	0	14	n	0.27	4	11	4	11	y	0.09	1	10	1	10	n	0.26	6	17	6	17	y	0.06	1	15	1	15	n	0.20	5	20	5	20	y	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.18	4	18	4	18	y	0.06	1	15	1	15	n	0.12	2	14	2	14	n	ENSMUSG00000030610.14	Det1	chr7	protein_coding	de-etiolated homolog 1 (Arabidopsis)
novel_NIR_18179	chr7	78494012	78496211	-	78494012	78496855	A5SS	ENSMUST00000032839.13	novel	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.15	2	11	2	11	y	0.00	0	6	0	6	n	0.00	0	7	0	7	n	ENSMUSG00000030610.14	Det1	chr7	protein_coding	de-etiolated homolog 1 (Arabidopsis)
novel_NIR_18180	chr7	78545949	78555591	+	78545762	78555591	A5SS	ENSMUST00000123824.2	novel	0.00	0	11	0	11	n	0.00	0	22	0	22	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	27	0	27	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.27	3	8	3	8	y	0.00	0	6	0	6	n	0.00	0	13	0	13	n	ENSMUSG00000030609.19	Aen	chr7	protein_coding	apoptosis enhancing nuclease
novel_NIR_18181	chr7	78545949	78555591	+	78545949;78552578	78551978;78555591	ES	ENSMUST00000107423.2	novel	0.00	0	10.5	0	1;20	n	0.00	0	14.0	0	0;28	n	0.00	0	25.0	0	2;48	n	0.00	0	12.5	0	0;25	n	0.00	0	11.0	0	2;20	n	0.00	0	14.0	0	0;28	n	0.00	0	17.0	0	1;33	n	0.00	0	11.0	0	0;22	n	0.00	0	8.5	0	0;17	n	0.24	3	9.5	3	0;19	y	0.00	0	12.0	0	1;23	n	0.00	0	12.0	0	1;23	n	ENSMUSG00000030609.19	Aen	chr7	protein_coding	apoptosis enhancing nuclease
novel_NIR_18182	chr7	78545949	78555591	+	78552389	78555591	5pMXE	ENSMUST00000206661.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000030609.19	Aen	chr7	protein_coding	apoptosis enhancing nuclease
novel_NIR_18183	chr7	78566481	78570269	+	78566481	78569460	3pMXE	ENSMUST00000121645.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000039236.19	Isg20	chr7	protein_coding	interferon-stimulated protein
novel_NIR_18184	chr7	78566481	78570269	+	78566481	78569549	3pMXE	ENSMUST00000205981.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000039236.19	Isg20	chr7	protein_coding	interferon-stimulated protein
novel_NIR_18185	chr7	78921605	78922196	-	78921605	78922491	A5SS	ENSMUST00000206795.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000108387.2	Gm31510	chr7	lncRNA	predicted gene, 31510
novel_NIR_18186	chr7	78921605	78922196	-	78921605	78922715	A5SS	ENSMUST00000206434.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000108387.2	Gm31510	chr7	lncRNA	predicted gene, 31510
novel_NIR_18187	chr7	79109048	79109437	-	79109048	79109459	A5SS	ENSMUST00000143672.3	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	5	0	5	n	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.14	1	6	1	6	n	0.45	5	6	5	6	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.25	1	3	1	3	n	0.75	3	1	3	1	y	0.00	0	2	0	2	n	ENSMUSG00000039176.18	Polg	chr7	protein_coding	polymerase (DNA directed), gamma
novel_NIR_18188	chr7	79109048	79109437	-	79109048;79109333	79109261;79109437	ES	ENSMUST00000149444.8	novel	0.00	0	28.5	0	1;56	n	0.00	0	12.0	0	0;24	n	0.00	0	28.5	0	3;54	n	0.08	3	32.5	3	0;65	n	0.00	0	38.5	0	2;75	n	0.05	1	19.5	1	0;39	n	0.09	5	53.5	5	0;107	n	0.07	2	25.0	2	0;50	n	0.04	1	24.0	1	1;47	n	0.03	1	29.5	1	1;58	n	0.15	3	16.5	3	0;33	y	0.00	0	42.0	0	2;82	n	ENSMUSG00000039176.18	Polg	chr7	protein_coding	polymerase (DNA directed), gamma
novel_NIR_18189	chr7	79115119	79115288	-	79115119	79115651	A5SS	ENSMUST00000125562.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000039176.18	Polg	chr7	protein_coding	polymerase (DNA directed), gamma
novel_NIR_18190	chr7	79354577	79355197	-	79354577	79356484	A5SS	ENSMUST00000183846.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000050382.15	Kif7	chr7	protein_coding	kinesin family member 7
novel_NIR_18191	chr7	79390026	79392658	-	79387658	79392658	A3SS	ENSMUST00000150606.2	novel	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	31	0	31	n	0.00	0	11	0	11	n	0.27	6	16	6	16	y	0.00	0	16	0	16	n	0.00	0	23	0	23	n	0.00	0	17	0	17	n	0.00	0	14	0	14	n	0.00	0	23	0	23	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	ENSMUSG00000030545.10	Pex11a	chr7	protein_coding	peroxisomal biogenesis factor 11 alpha
novel_NIR_18192	chr7	79390388	79392658	-	79387658	79392658	A3SS	ENSMUST00000150606.2	novel	0.00	0	8	0	8	n	0.18	2	9	2	9	y	0.14	5	31	5	31	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.06	1	16	1	16	n	0.00	0	23	0	23	n	0.11	2	17	2	17	n	0.00	0	14	0	14	n	0.00	0	23	0	23	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	ENSMUSG00000030545.10	Pex11a	chr7	protein_coding	peroxisomal biogenesis factor 11 alpha
novel_NIR_18193	chr7	79410336	79411208	+	79408273	79411208	A5SS	ENSMUST00000035622.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.40	2	3	2	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000039099.8	Wdr93	chr7	protein_coding	WD repeat domain 93
novel_NIR_18194	chr7	79430785	79435464	+	79427053	79435464	A5SS	ENSMUST00000035622.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.18	2	9	2	9	y	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	-	-	-	-	-	-	ENSMUSG00000039099.8	Wdr93	chr7	protein_coding	WD repeat domain 93
novel_NIR_18195	chr7	79430865	79435464	+	79427053	79435464	A5SS	ENSMUST00000035622.8	novel	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	5	0	5	n	-	-	-	-	-	-	ENSMUSG00000039099.8	Wdr93	chr7	protein_coding	WD repeat domain 93
novel_NIR_18196	chr7	79492175	79492775	-	79492408	79492775	3pMXE	ENSMUST00000149164.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	ENSMUSG00000039062.16	Anpep	chr7	protein_coding	alanyl (membrane) aminopeptidase
novel_NIR_18197	chr7	79492408	79492540	-	79492408	79492775	A5SS	ENSMUST00000149164.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.75	3	1	3	1	y	0.50	4	4	4	4	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.80	4	1	4	1	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	ENSMUSG00000039062.16	Anpep	chr7	protein_coding	alanyl (membrane) aminopeptidase
novel_NIR_18198	chr7	79492408	79492540	-	79492408	79497893	A5SS	ENSMUST00000107392.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.57	4	3	4	3	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039062.16	Anpep	chr7	protein_coding	alanyl (membrane) aminopeptidase
novel_NIR_18199	chr7	79492408	79492540	-	79492408	79510667	A5SS	ENSMUST00000206235.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039062.16	Anpep	chr7	protein_coding	alanyl (membrane) aminopeptidase
novel_NIR_18200	chr7	79492408	79494232	-	79492408	79492775	A5SS&ES	ENSMUST00000149164.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.75	3	1	3	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	ENSMUSG00000039062.16	Anpep	chr7	protein_coding	alanyl (membrane) aminopeptidase
novel_NIR_18201	chr7	79492408	79494232	-	79492408	79497893	A5SS	ENSMUST00000107392.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	3	3	3	3	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000039062.16	Anpep	chr7	protein_coding	alanyl (membrane) aminopeptidase
novel_NIR_18202	chr7	79492408	79494232	-	79492408	79510667	A5SS	ENSMUST00000206235.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000039062.16	Anpep	chr7	protein_coding	alanyl (membrane) aminopeptidase
novel_NIR_18203	chr7	79492856	79494232	-	79492856	79497893	A5SS	ENSMUST00000149164.2	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000039062.16	Anpep	chr7	protein_coding	alanyl (membrane) aminopeptidase
novel_NIR_18204	chr7	79677825	79730797	+	79674734	79730797	A5SS	ENSMUST00000164056.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000048897.16	Zfp710	chr7	protein_coding	zinc finger protein 710
novel_NIR_18205	chr7	79677825	79730797	+	79676231	79730797	A5SS	ENSMUST00000049680.10	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.50	2	2	2	2	y	0.14	1	6	1	6	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000048897.16	Zfp710	chr7	protein_coding	zinc finger protein 710
novel_NIR_18206	chr7	79677825	79730797	+	79677833	79730797	A5SS	ENSMUST00000206104.2	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.25	1	3	1	3	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000048897.16	Zfp710	chr7	protein_coding	zinc finger protein 710
novel_NIR_18207	chr7	79725011	79730797	+	79674734	79730797	A5SS	ENSMUST00000164056.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000048897.16	Zfp710	chr7	protein_coding	zinc finger protein 710
novel_NIR_18208	chr7	79725011	79730797	+	79676231	79730797	A5SS	ENSMUST00000049680.10	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.40	2	3	2	3	y	0.00	0	4	0	4	n	ENSMUSG00000048897.16	Zfp710	chr7	protein_coding	zinc finger protein 710
novel_NIR_18209	chr7	79725011	79730797	+	79677833	79730797	A5SS	ENSMUST00000206104.2	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	2	2	2	2	y	-	-	-	-	-	-	ENSMUSG00000048897.16	Zfp710	chr7	protein_coding	zinc finger protein 710
novel_NIR_18210	chr7	79746018	79747552	-	79746958	79747552	A3SS&ES	ENSMUST00000125542.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030541.17	Idh2	chr7	protein_coding	isocitrate dehydrogenase 2 (NADP+), mitochondrial
novel_NIR_18211	chr7	79878296	79879427	-	79878296	79882258	A5SS	ENSMUST00000071457.12	novel	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	32	0	32	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.00	0	14	0	14	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.04	1	24	1	24	n	0.00	0	7	0	7	n	ENSMUSG00000030538.16	Cib1	chr7	protein_coding	calcium and integrin binding 1 (calmyrin)
novel_NIR_18212	chr7	79878296	79882092	-	79878296	79882258	A5SS	ENSMUST00000071457.12	novel	0.20	3	12	3	12	y	0.00	0	12	0	12	n	0.13	2	13	2	13	n	0.00	0	32	0	32	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.18	3	14	3	14	y	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.22	4	14	4	14	y	0.11	3	24	3	24	n	0.30	3	7	3	7	y	ENSMUSG00000030538.16	Cib1	chr7	protein_coding	calcium and integrin binding 1 (calmyrin)
novel_NIR_18213	chr7	79878313	79880064	-	79878281	79880064	A3SS	ENSMUST00000206084.2	novel	0.00	0	12	0	12	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	20	0	20	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.07	2	26	2	26	n	0.18	3	14	3	14	y	-	-	-	-	-	-	ENSMUSG00000030538.16	Cib1	chr7	protein_coding	calcium and integrin binding 1 (calmyrin)
novel_NIR_18214	chr7	79880172	79881751	-	79880172	79880673	A5SS&ES	ENSMUST00000206802.2	novel	1.00	9	0	9	0	y	1.00	2	0	2	0	y	1.00	7	0	7	0	y	1.00	3	0	3	0	y	1.00	7	0	7	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	ENSMUSG00000030538.16	Cib1	chr7	protein_coding	calcium and integrin binding 1 (calmyrin)
novel_NIR_18215	chr7	79880172	79881751	-	79880172	79882258	A5SS	ENSMUST00000205996.2	novel	0.82	9	2	9	2	y	0.22	2	7	2	7	y	0.37	7	12	7	12	y	0.50	3	3	3	3	y	0.70	7	3	7	3	y	0.40	2	3	2	3	y	0.27	3	8	3	8	y	0.67	2	1	2	1	y	0.17	1	5	1	5	n	0.33	2	4	2	4	y	0.67	4	2	4	2	y	0.17	1	5	1	5	n	ENSMUSG00000030538.16	Cib1	chr7	protein_coding	calcium and integrin binding 1 (calmyrin)
novel_NIR_18216	chr7	79880172	79882033	-	79880172	79880673	A5SS&ES	ENSMUST00000206802.2	novel	1.00	5	0	5	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030538.16	Cib1	chr7	protein_coding	calcium and integrin binding 1 (calmyrin)
novel_NIR_18217	chr7	79880172	79882033	-	79880172	79882258	A5SS	ENSMUST00000205996.2	novel	0.71	5	2	5	2	y	0.36	4	7	4	7	y	0.00	0	12	0	12	n	0.25	1	3	1	3	n	0.50	3	3	3	3	y	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000030538.16	Cib1	chr7	protein_coding	calcium and integrin binding 1 (calmyrin)
novel_NIR_18218	chr7	79880190	79882092	-	79880738	79882092	A3SS&ES	ENSMUST00000206802.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030538.16	Cib1	chr7	protein_coding	calcium and integrin binding 1 (calmyrin)
novel_NIR_18219	chr7	79935646	79935732	+	79935646	79935759	A3SS	ENSMUST00000032749.12	novel	0.17	2	10	2	10	y	0.11	1	8	1	8	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	24	0	24	n	0.00	0	8	0	8	n	0.17	1	5	1	5	n	0.00	0	13	0	13	n	0.00	0	13	0	13	n	0.00	0	19	0	19	n	ENSMUSG00000030534.14	Vps33b	chr7	protein_coding	vacuolar protein sorting 33B
novel_NIR_18220	chr7	79940091	79940863	+	79940091;79940312	79940196;79940863	ES	ENSMUST00000032749.12	novel	0.00	0	10.0	0	9;11	n	0.00	0	15.0	0	15;15	n	0.00	0	20.5	0	28;13	n	0.00	0	10.0	0	14;6	n	0.00	0	18.0	0	19;17	n	0.00	0	7.5	0	7;8	n	0.00	0	11.0	0	10;12	n	0.00	0	9.0	0	12;6	n	0.00	0	12.5	0	12;13	n	0.18	3	14.0	3	18;10	y	0.00	0	12.0	0	12;12	n	0.00	0	14.0	0	15;13	n	ENSMUSG00000030534.14	Vps33b	chr7	protein_coding	vacuolar protein sorting 33B
novel_NIR_18221	chr7	79989739	79989862	-	79989460	79989862	A3SS	ENSMUST00000133728.8	novel	0.08	1	11	1	11	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.08	1	12	1	12	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.50	2	2	2	2	y	0.00	0	10	0	10	n	ENSMUSG00000030533.17	Unc45a	chr7	protein_coding	unc-45 myosin chaperone A
novel_NIR_18222	chr7	79993704	79999542	+	79993704	79993850	3pMXE	ENSMUST00000205448.2	novel	0.40	2	3	2	3	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000030532.7	Hddc3	chr7	protein_coding	HD domain containing 3
novel_NIR_18223	chr7	79993704	79999542	+	79993704	79994362	3pMXE	ENSMUST00000205768.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000030532.7	Hddc3	chr7	protein_coding	HD domain containing 3
novel_NIR_18224	chr7	79993704	79999542	+	79993704	79994659	3pMXE	ENSMUST00000206122.2	novel	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030532.7	Hddc3	chr7	protein_coding	HD domain containing 3
novel_NIR_18225	chr7	79993704	79999542	+	79993704	79994814	3pMXE	ENSMUST00000205531.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030532.7	Hddc3	chr7	protein_coding	HD domain containing 3
novel_NIR_18226	chr7	79993704	79999542	+	79993704	79994925	3pMXE	ENSMUST00000206074.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000030532.7	Hddc3	chr7	protein_coding	HD domain containing 3
novel_NIR_18227	chr7	79993704	79999542	+	79993704	79995396	3pMXE	ENSMUST00000032747.7	novel	0.25	2	6	2	6	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000030532.7	Hddc3	chr7	protein_coding	HD domain containing 3
novel_NIR_18228	chr7	79993704	79999542	+	79993704	79999869	A3SS	ENSMUST00000206089.2	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000030532.7	Hddc3	chr7	protein_coding	HD domain containing 3
novel_NIR_18229	chr7	80048676	80048910	-	80048676	80051175	A5SS	ENSMUST00000120753.3	novel	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.23	3	10	3	10	y	0.18	2	9	2	9	y	0.15	3	17	3	17	y	0.12	1	7	1	7	n	0.00	0	4	0	4	n	0.12	2	15	2	15	n	0.00	0	6	0	6	n	0.17	2	10	2	10	y	ENSMUSG00000030530.16	Furin	chr7	protein_coding	furin (paired basic amino acid cleaving enzyme)
novel_NIR_18230	chr7	80048676	80048910	-	80048676	80053020	A5SS	ENSMUST00000147150.2	novel	0.00	0	3	0	3	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.60	3	2	3	2	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000030530.16	Furin	chr7	protein_coding	furin (paired basic amino acid cleaving enzyme)
novel_NIR_18231	chr7	80048676	80048910	-	80048676	80055067	A5SS	ENSMUST00000107362.10	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.60	3	2	3	2	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	0.50	1	1	1	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000030530.16	Furin	chr7	protein_coding	furin (paired basic amino acid cleaving enzyme)
novel_NIR_18232	chr7	80048676	80050964	-	80048676	80051175	A5SS	ENSMUST00000120753.3	novel	0.71	10	4	10	4	y	0.00	0	5	0	5	n	0.17	1	5	1	5	n	0.22	4	14	4	14	y	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.06	1	15	1	15	n	0.00	0	6	0	6	n	0.09	1	10	1	10	n	ENSMUSG00000030530.16	Furin	chr7	protein_coding	furin (paired basic amino acid cleaving enzyme)
novel_NIR_18233	chr7	80048676	80050964	-	80048676	80053020	A5SS	ENSMUST00000147150.2	novel	0.77	10	3	10	3	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000030530.16	Furin	chr7	protein_coding	furin (paired basic amino acid cleaving enzyme)
novel_NIR_18234	chr7	80048676	80050964	-	80048676	80055067	A5SS	ENSMUST00000107362.10	novel	0.91	10	1	10	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000030530.16	Furin	chr7	protein_coding	furin (paired basic amino acid cleaving enzyme)
novel_NIR_18235	chr7	80048676	80051356	-	80048676	80053020	A5SS	ENSMUST00000147150.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030530.16	Furin	chr7	protein_coding	furin (paired basic amino acid cleaving enzyme)
novel_NIR_18236	chr7	80048676	80051356	-	80048676	80055067	A5SS	ENSMUST00000107362.10	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030530.16	Furin	chr7	protein_coding	furin (paired basic amino acid cleaving enzyme)
novel_NIR_18237	chr7	80048676	80051503	-	80048676	80051175	5pMXE	ENSMUST00000120753.3	novel	0.00	0	4	0	4	n	0.29	2	5	2	5	y	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.00	0	7	0	7	n	0.20	1	4	1	4	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.09	1	10	1	10	n	ENSMUSG00000030530.16	Furin	chr7	protein_coding	furin (paired basic amino acid cleaving enzyme)
novel_NIR_18238	chr7	80048676	80051503	-	80048676	80053020	A5SS	ENSMUST00000147150.2	novel	0.00	0	3	0	3	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000030530.16	Furin	chr7	protein_coding	furin (paired basic amino acid cleaving enzyme)
novel_NIR_18239	chr7	80048676	80051503	-	80048676	80055067	A5SS	ENSMUST00000107362.10	novel	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000030530.16	Furin	chr7	protein_coding	furin (paired basic amino acid cleaving enzyme)
novel_NIR_18240	chr7	80048676	80051541	-	80048676	80051175	5pMXE	ENSMUST00000120753.3	novel	0.20	1	4	1	4	n	0.17	1	5	1	5	n	0.29	2	5	2	5	y	0.26	5	14	5	14	y	0.29	4	10	4	10	y	0.10	1	9	1	9	n	0.19	4	17	4	17	y	0.12	1	7	1	7	n	0.33	2	4	2	4	y	0.06	1	15	1	15	n	0.14	1	6	1	6	n	0.09	1	10	1	10	n	ENSMUSG00000030530.16	Furin	chr7	protein_coding	furin (paired basic amino acid cleaving enzyme)
novel_NIR_18241	chr7	80048676	80051541	-	80048676	80053020	A5SS	ENSMUST00000147150.2	novel	0.25	1	3	1	3	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	5	0	5	0	y	0.67	4	2	4	2	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	0.50	1	1	1	1	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000030530.16	Furin	chr7	protein_coding	furin (paired basic amino acid cleaving enzyme)
novel_NIR_18242	chr7	80048676	80051541	-	80048676	80055067	A5SS	ENSMUST00000107362.10	novel	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	5	0	5	0	y	0.67	4	2	4	2	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	0.50	1	1	1	1	n	1.00	2	0	2	0	y	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000030530.16	Furin	chr7	protein_coding	furin (paired basic amino acid cleaving enzyme)
novel_NIR_18243	chr7	80048676	80051579	-	80048676	80051175	5pMXE	ENSMUST00000120753.3	novel	0.50	4	4	4	4	y	0.62	8	5	8	5	y	0.67	10	5	10	5	y	0.30	6	14	6	14	y	0.47	9	10	9	10	y	0.31	4	9	4	9	y	0.00	0	17	0	17	n	0.30	3	7	3	7	y	0.43	3	4	3	4	y	0.46	13	15	13	15	y	0.40	4	6	4	6	y	0.41	7	10	7	10	y	ENSMUSG00000030530.16	Furin	chr7	protein_coding	furin (paired basic amino acid cleaving enzyme)
novel_NIR_18244	chr7	80048676	80051579	-	80048676	80053020	A5SS	ENSMUST00000147150.2	novel	0.57	4	3	4	3	y	1.00	8	0	8	0	y	1.00	10	0	10	0	y	1.00	6	0	6	0	y	0.82	9	2	9	2	y	1.00	4	0	4	0	y	-	-	-	-	-	-	0.75	3	1	3	1	y	1.00	3	0	3	0	y	1.00	13	0	13	0	y	1.00	4	0	4	0	y	1.00	7	0	7	0	y	ENSMUSG00000030530.16	Furin	chr7	protein_coding	furin (paired basic amino acid cleaving enzyme)
novel_NIR_18245	chr7	80048676	80051579	-	80048676	80055067	A5SS	ENSMUST00000107362.10	novel	0.80	4	1	4	1	y	1.00	8	0	8	0	y	1.00	10	0	10	0	y	1.00	6	0	6	0	y	0.82	9	2	9	2	y	1.00	4	0	4	0	y	-	-	-	-	-	-	0.75	3	1	3	1	y	1.00	3	0	3	0	y	0.93	13	1	13	1	y	1.00	4	0	4	0	y	1.00	7	0	7	0	y	ENSMUSG00000030530.16	Furin	chr7	protein_coding	furin (paired basic amino acid cleaving enzyme)
novel_NIR_18246	chr7	80048676	80055062	-	80048676	80053020	5pMXE	ENSMUST00000147150.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030530.16	Furin	chr7	protein_coding	furin (paired basic amino acid cleaving enzyme)
novel_NIR_18247	chr7	80048676	80055062	-	80048676	80055067	A5SS	ENSMUST00000107362.10	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030530.16	Furin	chr7	protein_coding	furin (paired basic amino acid cleaving enzyme)
novel_NIR_18248	chr7	80255578	80259645	-	80255581	80259645	A3SS	ENSMUST00000122255.8	novel	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.14	1	6	1	6	n	0.00	0	12	0	12	n	0.08	1	11	1	11	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.24	4	13	4	13	y	0.00	0	6	0	6	n	0.00	0	6	0	6	n	ENSMUSG00000030527.16	Crtc3	chr7	protein_coding	CREB regulated transcription coactivator 3
novel_NIR_18249	chr7	80289396	80291680	+	80289396	80291717	A3SS	ENSMUST00000142678.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000084821.2	Gm15880	chr7	lncRNA	predicted gene 15880
novel_NIR_18250	chr7	80511082	80512913	+	80510825	80512913	A5SS	ENSMUST00000132163.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000038797.14	Zscan2	chr7	protein_coding	zinc finger and SCAN domain containing 2
novel_NIR_18251	chr7	80511082	80512913	+	80511082	80512916	A3SS	ENSMUST00000205361.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000038797.14	Zscan2	chr7	protein_coding	zinc finger and SCAN domain containing 2
novel_NIR_18252	chr7	80511082	80512913	+	80512056	80512913	5pMXE	ENSMUST00000044115.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000038797.14	Zscan2	chr7	protein_coding	zinc finger and SCAN domain containing 2
novel_NIR_18253	chr7	80513419	80517472	+	80513419	80524684	A3SS	ENSMUST00000132163.8	novel	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.20	2	8	2	8	y	ENSMUSG00000038797.14	Zscan2	chr7	protein_coding	zinc finger and SCAN domain containing 2
novel_NIR_18254	chr7	80572191	80572849	-	80572132	80572849	A3SS	ENSMUST00000147881.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025724.13	Sec11a	chr7	protein_coding	SEC11 homolog A, signal peptidase complex subunit
novel_NIR_18255	chr7	80572968	80584775	-	80572968	80575346	5pMXE	ENSMUST00000150049.8	novel	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	ENSMUSG00000025724.13	Sec11a	chr7	protein_coding	SEC11 homolog A, signal peptidase complex subunit
novel_NIR_18256	chr7	80577634	80597150	-	80572963	80597150	A3SS	ENSMUST00000147813.8	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025724.13	Sec11a	chr7	protein_coding	SEC11 homolog A, signal peptidase complex subunit
novel_NIR_18257	chr7	80671934	80673019	+	80659287	80673019	A5SS	ENSMUST00000107353.3	novel	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.03	1	29	1	29	n	0.04	1	23	1	23	n	0.00	0	30	0	30	n	0.00	0	4	0	4	n	0.20	3	12	3	12	y	0.05	1	20	1	20	n	0.00	0	17	0	17	n	0.00	0	24	0	24	n	0.00	0	16	0	16	n	0.00	0	18	0	18	n	ENSMUSG00000005621.12	Zfp592	chr7	protein_coding	zinc finger protein 592
novel_NIR_18258	chr7	80673232	80675142	+	80673232	80673891	3pMXE	ENSMUST00000176477.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000005621.12	Zfp592	chr7	protein_coding	zinc finger protein 592
novel_NIR_18259	chr7	80707520	80717627	+	80707520;80713735	80713697;80717627	ES	ENSMUST00000107348.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.57	12	9.0	12	8;10	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038763.13	Alpk3	chr7	protein_coding	alpha-kinase 3
novel_NIR_18260	chr7	80964586	80964858	+	80959643	80964858	A5SS	ENSMUST00000130494.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000025584.18	Pde8a	chr7	protein_coding	phosphodiesterase 8A
novel_NIR_18261	chr7	80964586	80964858	+	80964532	80964858	A5SS	ENSMUST00000128154.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000025584.18	Pde8a	chr7	protein_coding	phosphodiesterase 8A
novel_NIR_18262	chr7	81005759	81006693	-	81005759	81006642	A5SS	ENSMUST00000098331.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000025586.18	Cpeb1	chr7	protein_coding	cytoplasmic polyadenylation element binding protein 1
novel_NIR_18263	chr7	81005759	81006693	-	81005759	81006657	A5SS	ENSMUST00000130310.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.25	2	6	2	6	y	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.25	1	3	1	3	n	ENSMUSG00000025586.18	Cpeb1	chr7	protein_coding	cytoplasmic polyadenylation element binding protein 1
novel_NIR_18264	chr7	81011557;81013095	81013051;81021760	-	81011557	81021760	cassetteExon	ENSMUST00000098331.10	novel	0.00	0.0	4	0;0	4	n	0.00	0.0	5	0;0	5	n	0.00	0.0	11	0;0	11	n	0.00	0.0	5	0;0	5	n	0.00	0.0	6	0;0	6	n	0.00	0.0	3	0;0	3	n	0.00	0.0	13	0;0	13	n	0.00	0.0	3	0;0	3	n	0.00	0.0	2	0;0	2	n	0.00	0.0	6	0;0	6	n	0.67	2.0	1	2;2	1	y	0.00	0.0	9	0;0	9	n	ENSMUSG00000025586.18	Cpeb1	chr7	protein_coding	cytoplasmic polyadenylation element binding protein 1
novel_NIR_18265	chr7	81191921	81192005	-	81191921	81194708	A5SS	ENSMUST00000042318.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038663.8	Fsd2	chr7	protein_coding	fibronectin type III and SPRY domain containing 2
novel_NIR_18266	chr7	81236047;81238300	81238166;81239086	+	81236047	81239086	cassetteExon	ENSMUST00000207123.2	novel	0.08	9.0	98	12;6	98	n	0.09	6.5	63	5;8	63	n	0.05	5.0	86	3;7	86	n	0.04	4.5	121	5;4	121	n	0.04	4.0	102	4;4	102	n	0.15	7.0	39	3;11	39	y	0.04	4.0	91	4;4	91	n	0.08	4.0	49	2;6	49	n	0.07	6.5	91	10;3	91	n	0.08	11.0	126	9;13	126	n	0.08	10.0	118	12;8	118	n	0.07	11.5	152	10;13	152	n	ENSMUSG00000045795.11	Whamm	chr7	protein_coding	WAS protein homolog associated with actin, golgi membranes and microtubules
novel_NIR_18267	chr7	81430318	81432779	-	81432329	81432779	3pMXE	ENSMUST00000026092.9	novel	0.59	48	34	48	34	y	0.63	61	36	61	36	y	0.75	79	27	79	27	y	0.56	43	34	43	34	y	0.62	69	43	69	43	y	0.51	42	41	42	41	y	0.63	92	54	92	54	y	0.60	43	29	43	29	y	0.71	40	16	40	16	y	0.67	72	35	72	35	y	0.65	68	36	68	36	y	0.54	36	31	36	31	y	ENSMUSG00000025102.15	3110040N11Rik	chr7	protein_coding	RIKEN cDNA 3110040N11 gene
novel_NIR_18268	chr7	81438324	81439117	-	81438324	81438705	5pMXE	ENSMUST00000154937.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000025102.15	3110040N11Rik	chr7	protein_coding	RIKEN cDNA 3110040N11 gene
novel_NIR_18269	chr7	81438324	81439117	-	81438324	81439176	A5SS	ENSMUST00000142557.8	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.83	5	1	5	1	y	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.30	3	7	3	7	y	0.00	0	4	0	4	n	0.14	1	6	1	6	n	ENSMUSG00000025102.15	3110040N11Rik	chr7	protein_coding	RIKEN cDNA 3110040N11 gene
novel_NIR_18270	chr7	81438324	81439180	-	81438324	81438705	5pMXE	ENSMUST00000154937.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025102.15	3110040N11Rik	chr7	protein_coding	RIKEN cDNA 3110040N11 gene
novel_NIR_18271	chr7	81438324	81439180	-	81438324	81439176	A5SS	ENSMUST00000142557.8	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	ENSMUSG00000025102.15	3110040N11Rik	chr7	protein_coding	RIKEN cDNA 3110040N11 gene
novel_NIR_18272	chr7	82307349	82307475	+	82307349	82320813	A3SS	ENSMUST00000141726.8	novel	0.08	1	11	1	11	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.10	1	9	1	9	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.38	3	5	3	5	y	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	ENSMUSG00000038563.15	Efl1	chr7	protein_coding	elongation factor like GTPase 1
novel_NIR_18273	chr7	82322155	82323613	+	82322155	82323576	A3SS	ENSMUST00000141726.8	novel	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	16	0	16	n	0.00	0	5	0	5	n	0.09	1	10	1	10	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.15	2	11	2	11	y	ENSMUSG00000038563.15	Efl1	chr7	protein_coding	elongation factor like GTPase 1
novel_NIR_18274	chr7	83281296	83281944	+	83281853	83281944	5pMXE	ENSMUST00000130723.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.83	5	1	5	1	y	ENSMUSG00000046027.18	Stard5	chr7	protein_coding	StAR-related lipid transfer (START) domain containing 5
novel_NIR_18275	chr7	83281304	83281944	+	83281853	83281944	5pMXE	ENSMUST00000130723.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.83	5	1	5	1	y	ENSMUSG00000046027.18	Stard5	chr7	protein_coding	StAR-related lipid transfer (START) domain containing 5
novel_NIR_18276	chr7	83281345	83281944	+	83281853	83281944	5pMXE	ENSMUST00000130723.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	4	0	4	0	y	0.00	0	1	0	1	n	ENSMUSG00000046027.18	Stard5	chr7	protein_coding	StAR-related lipid transfer (START) domain containing 5
novel_NIR_18277	chr7	83286905	83287920	+	83286905	83293649	A3SS	ENSMUST00000117410.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000046027.18	Stard5	chr7	protein_coding	StAR-related lipid transfer (START) domain containing 5
novel_NIR_18278	chr7	83286905	83289667	+	83286905	83293649	A3SS	ENSMUST00000117410.2	novel	1.00	2	0	2	0	y	1.00	6	0	6	0	y	1.00	5	0	5	0	y	1.00	6	0	6	0	y	1.00	14	0	14	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	5	0	5	0	y	1.00	4	0	4	0	y	1.00	12	0	12	0	y	ENSMUSG00000046027.18	Stard5	chr7	protein_coding	StAR-related lipid transfer (START) domain containing 5
novel_NIR_18279	chr7	83286905	83289671	+	83286905	83293649	A3SS	ENSMUST00000117410.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000046027.18	Stard5	chr7	protein_coding	StAR-related lipid transfer (START) domain containing 5
novel_NIR_18280	chr7	83286905	83291637	+	83286905	83293649	A3SS	ENSMUST00000117410.2	novel	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	7	0	7	0	y	1.00	2	0	2	0	y	ENSMUSG00000046027.18	Stard5	chr7	protein_coding	StAR-related lipid transfer (START) domain containing 5
novel_NIR_18281	chr7	83286905	83291843	+	83286905	83293649	A3SS	ENSMUST00000117410.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000046027.18	Stard5	chr7	protein_coding	StAR-related lipid transfer (START) domain containing 5
novel_NIR_18282	chr7	84248448	84249985	-	84246483	84249985	A3SS	ENSMUST00000209112.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000030630.17	Fah	chr7	protein_coding	fumarylacetoacetate hydrolase
novel_NIR_18283	chr7	84249791	84249985	-	84246483	84249985	A3SS	ENSMUST00000209112.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	2	1	2	1	y	-	-	-	-	-	-	ENSMUSG00000030630.17	Fah	chr7	protein_coding	fumarylacetoacetate hydrolase
novel_NIR_18284	chr7	84249884	84249985	-	84246483	84249985	A3SS	ENSMUST00000209112.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	ENSMUSG00000030630.17	Fah	chr7	protein_coding	fumarylacetoacetate hydrolase
novel_NIR_18285	chr7	84249891	84249985	-	84246483	84249985	A3SS	ENSMUST00000209112.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000030630.17	Fah	chr7	protein_coding	fumarylacetoacetate hydrolase
novel_NIR_18286	chr7	84250362	84250473	-	84250362	84251242	A5SS	ENSMUST00000153126.2	novel	0.25	1	3	1	3	n	0.44	4	5	4	5	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.09	1	10	1	10	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	ENSMUSG00000030630.17	Fah	chr7	protein_coding	fumarylacetoacetate hydrolase
novel_NIR_18287	chr7	84250362	84251086	-	84250362	84251242	A5SS	ENSMUST00000153126.2	novel	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.17	2	10	2	10	y	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.11	1	8	1	8	n	ENSMUSG00000030630.17	Fah	chr7	protein_coding	fumarylacetoacetate hydrolase
novel_NIR_18288	chr7	84250362	84251234	-	84250362	84251242	A5SS	ENSMUST00000153126.2	novel	0.62	5	3	5	3	y	0.44	4	5	4	5	y	0.71	10	4	10	4	y	0.57	4	3	4	3	y	0.58	14	10	14	10	y	1.00	1	0	1	0	n	0.44	7	9	7	9	y	0.71	5	2	5	2	y	0.80	8	2	8	2	y	0.45	9	11	9	11	y	0.71	10	4	10	4	y	0.67	16	8	16	8	y	ENSMUSG00000030630.17	Fah	chr7	protein_coding	fumarylacetoacetate hydrolase
novel_NIR_18289	chr7	84250362	84254851	-	84250362	84251242	5pMXE	ENSMUST00000153126.2	novel	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.50	3	3	3	3	y	0.00	0	10	0	10	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.21	3	11	3	11	y	0.00	0	4	0	4	n	0.33	4	8	4	8	y	ENSMUSG00000030630.17	Fah	chr7	protein_coding	fumarylacetoacetate hydrolase
novel_NIR_18290	chr7	84251399	84252411	-	84251399	84255758	A5SS	ENSMUST00000128460.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000030630.17	Fah	chr7	protein_coding	fumarylacetoacetate hydrolase
novel_NIR_18291	chr7	84251399	84253436	-	84251399	84255758	A5SS	ENSMUST00000128460.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030630.17	Fah	chr7	protein_coding	fumarylacetoacetate hydrolase
novel_NIR_18292	chr7	84251399	84253708	-	84251399	84255758	A5SS	ENSMUST00000128460.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030630.17	Fah	chr7	protein_coding	fumarylacetoacetate hydrolase
novel_NIR_18293	chr7	84251399	84253711	-	84251399	84255758	A5SS	ENSMUST00000128460.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	ENSMUSG00000030630.17	Fah	chr7	protein_coding	fumarylacetoacetate hydrolase
novel_NIR_18294	chr7	86896791	86898692	+	86896791	86936381	A3SS	ENSMUST00000124269.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000030562.18	Nox4	chr7	protein_coding	NADPH oxidase 4
novel_NIR_18295	chr7	86896791	86898692	+	86896791	86944996	A3SS	ENSMUST00000126887.8	novel	0.00	0	19	0	19	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.16	3	16	3	16	y	0.10	2	19	2	19	n	0.00	0	4	0	4	n	0.06	1	15	1	15	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.06	1	17	1	17	n	0.09	1	10	1	10	n	0.11	2	16	2	16	n	ENSMUSG00000030562.18	Nox4	chr7	protein_coding	NADPH oxidase 4
novel_NIR_18296	chr7	86896791	86954046	+	86896791	86936381	3pMXE	ENSMUST00000124269.8	novel	-	-	-	-	-	-	0.67	2	1	2	1	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.67	2	1	2	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030562.18	Nox4	chr7	protein_coding	NADPH oxidase 4
novel_NIR_18297	chr7	88808223	88845321	-	88808223	88808724	5pMXE	ENSMUST00000136267.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039428.12	Tmem135	chr7	protein_coding	transmembrane protein 135
novel_NIR_18298	chr7	88956472	88997617	-	88956472	89053281	A5SS	ENSMUST00000124477.8	novel	0.00	0	12	0	12	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.50	5	5	5	5	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	ENSMUSG00000039428.12	Tmem135	chr7	protein_coding	transmembrane protein 135
novel_NIR_18299	chr7	88956472;88997653	88997617;89053281	-	88956472	89053281	cassetteExon	ENSMUST00000124477.8	novel	0.00	0.0	12	0;0	12	n	1.00	1.0	0	0;2	0	n	0.00	0.0	8	0;0	8	n	0.47	4.5	5	5;4	5	y	0.00	0.0	3	0;0	3	n	0.00	0.0	3	0;0	3	n	0.00	0.0	10	0;0	10	n	0.00	0.0	2	0;0	2	n	1.00	1.0	0	2;0	0	n	0.00	0.0	6	0;0	6	n	0.00	0.0	8	0;0	8	n	0.00	0.0	5	0;0	5	n	ENSMUSG00000039428.12	Tmem135	chr7	protein_coding	transmembrane protein 135
novel_NIR_18300	chr7	88997653	89053281	-	88956472	89053281	A3SS	ENSMUST00000124477.8	novel	0.00	0	12	0	12	n	1.00	2	0	2	0	y	0.00	0	8	0	8	n	0.44	4	5	4	5	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	ENSMUSG00000039428.12	Tmem135	chr7	protein_coding	transmembrane protein 135
novel_NIR_18301	chr7	89039202	89053281	-	88956472	89053281	A3SS	ENSMUST00000124477.8	novel	0.20	3	12	3	12	y	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.14	1	6	1	6	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	ENSMUSG00000039428.12	Tmem135	chr7	protein_coding	transmembrane protein 135
novel_NIR_18302	chr7	89572923	89584947	-	89572923	89579528	A5SS&ES	ENSMUST00000078918.10	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	ENSMUSG00000062797.15	Hikeshi	chr7	protein_coding	heat shock protein nuclear import factor
novel_NIR_18303	chr7	89572923	89584947	-	89572923	89590177	A5SS	ENSMUST00000208357.2	novel	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.33	2	4	2	4	y	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.20	2	8	2	8	y	ENSMUSG00000062797.15	Hikeshi	chr7	protein_coding	heat shock protein nuclear import factor
novel_NIR_18304	chr7	89585172	89590085	-	89585172	89589188	A5SS&ES	ENSMUST00000075010.12	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000062797.15	Hikeshi	chr7	protein_coding	heat shock protein nuclear import factor
novel_NIR_18305	chr7	89810543	89811261	+	89810543	89818390	A3SS	ENSMUST00000207949.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039361.12	Picalm	chr7	protein_coding	phosphatidylinositol binding clathrin assembly protein
novel_NIR_18306	chr7	89826811	89831448	+	89826811	89831427	A3SS	ENSMUST00000207484.2	novel	0.03	1	32	1	32	n	0.00	0	22	0	22	n	0.07	11	142	11	142	n	0.10	3	26	3	26	n	0.14	8	48	8	48	n	0.20	9	36	9	36	y	0.07	4	52	4	52	n	0.03	1	35	1	35	n	0.10	4	37	4	37	n	0.08	5	61	5	61	n	0.00	0	46	0	46	n	0.02	1	62	1	62	n	ENSMUSG00000039361.12	Picalm	chr7	protein_coding	phosphatidylinositol binding clathrin assembly protein
novel_NIR_18307	chr7	90093239	90093508	+	90093410	90093508	A5SS	ENSMUST00000208379.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	ENSMUSG00000051451.7	Crebzf	chr7	protein_coding	CREB/ATF bZIP transcription factor
novel_NIR_18308	chr7	92289545	92294752	+	92289143	92294752	A5SS	ENSMUST00000182265.3	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.80	4	1	4	1	y	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	7	0	7	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000098066.3	Gm26944	chr7	lncRNA	predicted gene, 26944
novel_NIR_18309	chr7	92315093	92318637	-	92315073	92318637	A3SS	ENSMUST00000119954.9	novel	0.00	0	6	0	6	n	0.29	2	5	2	5	y	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	17	0	17	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	ENSMUSG00000041328.17	Pcf11	chr7	protein_coding	PCF11 cleavage and polyadenylation factor subunit
novel_NIR_18310	chr7	92390184	92390578	-	92390184	92390270	A5SS	ENSMUST00000182408.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000074024.6	4632427E13Rik	chr7	lncRNA	RIKEN cDNA 4632427E13 gene
novel_NIR_18311	chr7	96622769	96672825	+	96622769	96652005	3pMXE	ENSMUST00000149204.3	novel	0.19	3	13	3	13	y	0.04	1	23	1	23	n	0.00	0	13	0	13	n	0.00	0	32	0	32	n	0.00	0	28	0	28	n	0.00	0	8	0	8	n	0.04	1	27	1	27	n	0.00	0	6	0	6	n	0.13	4	26	4	26	n	0.06	2	29	2	29	n	0.00	0	19	0	19	n	0.00	0	25	0	25	n	ENSMUSG00000018995.13	Nars2	chr7	protein_coding	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)
novel_NIR_18312	chr7	96968792	96969174	-	96964134	96969174	A3SS	ENSMUST00000168435.7	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.75	3	1	3	1	y	0.00	0	2	0	2	n	ENSMUSG00000035713.16	Usp35	chr7	protein_coding	ubiquitin specific peptidase 35
novel_NIR_18313	chr7	96968792	96969174	-	96968789	96969174	A3SS	ENSMUST00000181354.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000035713.16	Usp35	chr7	protein_coding	ubiquitin specific peptidase 35
novel_NIR_18314	chr7	96973545	96974499	-	96973547	96974499	A3SS	ENSMUST00000168435.7	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000035713.16	Usp35	chr7	protein_coding	ubiquitin specific peptidase 35
novel_NIR_18315	chr7	96981578;96996132	96996020;96996500	+	96981578	96996500	cassetteExon	ENSMUST00000054107.6	novel	0.14	1.0	6	0;2	6	n	0.23	1.5	5	1;2	5	n	0.27	1.5	4	1;2	4	n	0.54	3.5	3	0;7	3	n	0.42	5.0	7	0;10	7	n	0.65	5.5	3	3;8	3	y	0.65	5.5	3	2;9	3	y	0.69	4.5	2	4;5	2	y	0.40	2.0	3	3;1	3	n	0.11	0.5	4	0;1	4	n	0.43	4.5	6	6;3	6	y	0.56	2.5	2	4;1	2	n	ENSMUSG00000044952.6	Kctd21	chr7	protein_coding	potassium channel tetramerisation domain containing 21
novel_NIR_18316	chr7	96996132	96996500	+	96981578	96996500	A5SS	ENSMUST00000054107.6	novel	0.25	2	6	2	6	y	0.29	2	5	2	5	n	0.33	2	4	2	4	n	0.70	7	3	7	3	y	0.59	10	7	10	7	y	0.73	8	3	8	3	n	0.75	9	3	9	3	n	0.71	5	2	5	2	n	0.25	1	3	1	3	n	0.20	1	4	1	4	n	0.33	3	6	3	6	n	0.33	1	2	1	2	n	ENSMUSG00000044952.6	Kctd21	chr7	protein_coding	potassium channel tetramerisation domain containing 21
novel_NIR_18317	chr7	97130357	97134127	+	97130357	97134124	A3SS	ENSMUST00000026126.10	novel	0.21	3	11	3	11	y	0.00	0	5	0	5	n	0.19	6	25	6	25	y	0.16	5	26	5	26	y	0.10	4	37	4	37	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.15	3	17	3	17	y	0.12	1	7	1	7	n	0.24	7	22	7	22	y	0.12	2	15	2	15	n	0.00	0	13	0	13	n	ENSMUSG00000025133.10	Ints4	chr7	protein_coding	integrator complex subunit 4
novel_NIR_18318	chr7	97145022	97148756	+	97145049	97148756	A5SS	ENSMUST00000026126.10	novel	0.19	3	13	3	13	y	0.07	1	13	1	13	n	0.00	0	22	0	22	n	0.00	0	25	0	25	n	0.04	1	25	1	25	n	0.26	7	20	7	20	y	0.00	0	19	0	19	n	0.17	3	15	3	15	y	0.00	0	23	0	23	n	0.00	0	22	0	22	n	0.00	0	10	0	10	n	0.03	1	28	1	28	n	ENSMUSG00000025133.10	Ints4	chr7	protein_coding	integrator complex subunit 4
novel_NIR_18319	chr7	97207433	97224795	-	97199948	97224795	A3SS	ENSMUST00000144858.8	novel	0.55	12	10	12	10	y	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.50	8	8	8	8	y	0.22	4	14	4	14	y	0.43	3	4	3	4	y	0.33	6	12	6	12	y	0.20	1	4	1	4	n	0.21	3	11	3	11	y	0.40	6	9	6	9	y	0.45	5	6	5	6	y	0.31	5	11	5	11	y	ENSMUSG00000035642.17	Aamdc	chr7	protein_coding	adipogenesis associated Mth938 domain containing
novel_NIR_18320	chr7	97207433	97224795	-	97207433	97228573	A5SS	ENSMUST00000124552.3	novel	1.00	12	0	12	0	y	0.20	1	4	1	4	n	-	-	-	-	-	-	1.00	8	0	8	0	y	0.80	4	1	4	1	y	1.00	3	0	3	0	y	0.86	6	1	6	1	y	1.00	1	0	1	0	n	0.43	3	4	3	4	y	0.75	6	2	6	2	y	0.71	5	2	5	2	y	0.71	5	2	5	2	y	ENSMUSG00000035642.17	Aamdc	chr7	protein_coding	adipogenesis associated Mth938 domain containing
novel_NIR_18321	chr7	97207433	97224795	-	97207433;97214507	97214358;97224795	ES	ENSMUST00000178078.8	novel	0.16	12	62.0	12	74;50	y	0.01	1	72.0	1	100;44	n	0.00	0	17.5	0	16;19	n	0.10	8	69.0	8	67;71	n	0.06	4	67.5	4	78;57	n	0.14	3	18.0	3	23;13	n	0.07	6	75.5	6	88;63	n	0.05	1	19.5	1	15;24	n	0.05	3	55.0	3	64;46	n	0.06	6	89.0	6	102;76	n	0.07	5	62.5	5	71;54	n	0.07	5	70.0	5	83;57	n	ENSMUSG00000035642.17	Aamdc	chr7	protein_coding	adipogenesis associated Mth938 domain containing
novel_NIR_18322	chr7	97207433	97224795	-	97214507	97224795	A3SS&ES	ENSMUST00000042627.16	novel	0.19	12	50	12	50	y	0.02	1	44	1	44	n	0.00	0	19	0	19	n	0.10	8	71	8	71	n	0.07	4	57	4	57	n	0.19	3	13	3	13	y	0.09	6	63	6	63	n	0.04	1	24	1	24	n	0.06	3	46	3	46	n	0.07	6	76	6	76	n	0.08	5	54	5	54	n	0.08	5	57	5	57	n	ENSMUSG00000035642.17	Aamdc	chr7	protein_coding	adipogenesis associated Mth938 domain containing
novel_NIR_18323	chr7	97217822	97218894	-	97217822	97224795	A5SS	ENSMUST00000126085.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000035642.17	Aamdc	chr7	protein_coding	adipogenesis associated Mth938 domain containing
novel_NIR_18324	chr7	97224898	97227800	-	97224898	97226948	A5SS&ES	ENSMUST00000151840.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035642.17	Aamdc	chr7	protein_coding	adipogenesis associated Mth938 domain containing
novel_NIR_18325	chr7	97224898	97227800	-	97224898	97227665	A5SS	ENSMUST00000135998.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035642.17	Aamdc	chr7	protein_coding	adipogenesis associated Mth938 domain containing
novel_NIR_18326	chr7	97330065	97345319	-	97328305	97345319	A3SS	ENSMUST00000155074.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000086993.2	Rsf1os2	chr7	lncRNA	remodeling and spacing factor 1, opposite strand 2
novel_NIR_18327	chr7	97714988	97715552	-	97714988	97715548	A5SS	ENSMUST00000156992.8	novel	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.09	1	10	1	10	n	0.00	0	7	0	7	n	0.00	0	19	0	19	n	0.29	2	5	2	5	y	0.00	0	7	0	7	n	0.00	0	12	0	12	n	ENSMUSG00000030761.17	Myo7a	chr7	protein_coding	myosin VIIA
novel_NIR_18328	chr7	97715102	97715552	-	97715102	97715548	A5SS	ENSMUST00000107128.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	ENSMUSG00000030761.17	Myo7a	chr7	protein_coding	myosin VIIA
novel_NIR_18329	chr7	97751909	97766923	-	97751909	97752394	5pMXE	ENSMUST00000155637.8	novel	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000030761.17	Myo7a	chr7	protein_coding	myosin VIIA
novel_NIR_18330	chr7	97751909	97766923	-	97751909	97756199	5pMXE	ENSMUST00000205746.2	novel	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000030761.17	Myo7a	chr7	protein_coding	myosin VIIA
novel_NIR_18331	chr7	97751909	97766923	-	97751909;97756312	97756199;97766923	ES	ENSMUST00000107128.8	novel	0.80	2	0.5	2	1;0	y	0.00	0	1.5	0	0;3	n	0.00	0	5.0	0	5;5	n	0.00	0	2.0	0	2;2	n	0.00	0	2.0	0	3;1	n	0.00	0	2.0	0	3;1	n	0.00	0	1.0	0	1;1	n	0.00	0	1.5	0	1;2	n	0.00	0	2.5	0	4;1	n	0.00	0	1.0	0	2;0	n	-	-	-	-	-	-	0.00	0	2.5	0	5;0	n	ENSMUSG00000030761.17	Myo7a	chr7	protein_coding	myosin VIIA
novel_NIR_18332	chr7	97782167	97784967	-	97782232	97784967	A3SS	ENSMUST00000040971.14	novel	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000035547.15	Capn5	chr7	protein_coding	calpain 5
novel_NIR_18333	chr7	97797974	97801019	-	97785175	97801019	A3SS	ENSMUST00000040971.14	novel	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	5	0	5	n	ENSMUSG00000035547.15	Capn5	chr7	protein_coding	calpain 5
novel_NIR_18334	chr7	97797974	97801019	-	97794963	97801019	A3SS	ENSMUST00000134638.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000035547.15	Capn5	chr7	protein_coding	calpain 5
novel_NIR_18335	chr7	97811317	97827673	-	97811317	97811483	5pMXE	ENSMUST00000107112.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035547.15	Capn5	chr7	protein_coding	calpain 5
novel_NIR_18336	chr7	97811317	97827673	-	97811317	97813918	5pMXE	ENSMUST00000155056.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035547.15	Capn5	chr7	protein_coding	calpain 5
novel_NIR_18337	chr7	97811317	97827673	-	97811317	97814322	5pMXE	ENSMUST00000129430.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035547.15	Capn5	chr7	protein_coding	calpain 5
novel_NIR_18338	chr7	97811317	97827673	-	97811317	97827251	5pMXE	ENSMUST00000040971.14	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000035547.15	Capn5	chr7	protein_coding	calpain 5
novel_NIR_18339	chr7	97893214	97906903	-	97893214;97901132	97901097;97906903	ES	ENSMUST00000033020.14	novel	0.00	0	12.0	0	13;11	n	0.00	0	8.5	0	9;8	n	0.05	2	34.5	2	28;41	n	0.00	0	13.0	0	12;14	n	0.06	1	17.0	1	16;18	n	0.00	0	13.5	0	15;12	n	0.00	0	21.0	0	22;20	n	0.00	0	12.5	0	16;9	n	0.00	0	8.0	0	9;7	n	0.21	3	11.5	3	12;11	y	0.00	0	6.5	0	5;8	n	0.00	0	11.0	0	11;11	n	ENSMUSG00000030760.15	Acer3	chr7	protein_coding	alkaline ceramidase 3
novel_NIR_18340	chr7	97893214	97906903	-	97901132	97906903	3pMXE	ENSMUST00000137899.2	novel	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.05	2	41	2	41	n	0.00	0	14	0	14	n	0.05	1	18	1	18	n	0.00	0	12	0	12	n	0.00	0	20	0	20	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.21	3	11	3	11	y	0.00	0	8	0	8	n	0.00	0	11	0	11	n	ENSMUSG00000030760.15	Acer3	chr7	protein_coding	alkaline ceramidase 3
novel_NIR_18341	chr7	97906984	97908542	-	97906984	97910794	A5SS	ENSMUST00000137899.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000030760.15	Acer3	chr7	protein_coding	alkaline ceramidase 3
novel_NIR_18342	chr7	97906984	97908577	-	97906984	97910794	A5SS	ENSMUST00000137899.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000030760.15	Acer3	chr7	protein_coding	alkaline ceramidase 3
novel_NIR_18343	chr7	98002337	98010275	-	98002337	98002684	A5SS&ES	ENSMUST00000094161.11	novel	0.02	1	54	1	54	n	0.00	0	46	0	46	n	0.11	5	40	5	40	n	0.00	0	41	0	41	n	0.00	0	46	0	46	n	0.04	2	45	2	45	n	0.00	0	18	0	18	n	0.00	0	18	0	18	n	0.04	1	24	1	24	n	0.17	10	50	10	50	y	0.13	4	27	4	27	n	0.00	0	10	0	10	n	ENSMUSG00000049580.13	Tsku	chr7	protein_coding	tsukushi, small leucine rich proteoglycan
novel_NIR_18344	chr7	98002337	98010275	-	98002337	98008565	A5SS&ES	ENSMUST00000164726.8	novel	0.05	1	18	1	18	n	0.00	0	18	0	18	n	0.19	5	21	5	21	y	0.00	0	16	0	16	n	0.00	0	19	0	19	n	0.13	2	13	2	13	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.56	10	8	10	8	y	0.29	4	10	4	10	y	0.00	0	2	0	2	n	ENSMUSG00000049580.13	Tsku	chr7	protein_coding	tsukushi, small leucine rich proteoglycan
novel_NIR_18345	chr7	98002337	98010275	-	98002337	98009228	5pMXE	ENSMUST00000179780.3	novel	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.45	5	6	5	6	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.83	10	2	10	2	y	0.57	4	3	4	3	y	-	-	-	-	-	-	ENSMUSG00000049580.13	Tsku	chr7	protein_coding	tsukushi, small leucine rich proteoglycan
novel_NIR_18346	chr7	98002337	98010275	-	98002337	98010366	A5SS	ENSMUST00000167405.3	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.83	5	1	5	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	10	0	10	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	ENSMUSG00000049580.13	Tsku	chr7	protein_coding	tsukushi, small leucine rich proteoglycan
novel_NIR_18347	chr7	98002337	98010275	-	98002337	98010449	A5SS	ENSMUST00000206414.2	novel	0.03	1	38	1	38	n	0.00	0	28	0	28	n	0.15	5	28	5	28	y	0.00	0	27	0	27	n	0.00	0	14	0	14	n	0.06	2	29	2	29	n	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.17	1	5	1	5	n	0.28	10	26	10	26	y	0.24	4	13	4	13	y	0.00	0	4	0	4	n	ENSMUSG00000049580.13	Tsku	chr7	protein_coding	tsukushi, small leucine rich proteoglycan
novel_NIR_18348	chr7	98002337	98010275	-	98002337	98010485	A5SS	ENSMUST00000165257.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	10	0	10	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	ENSMUSG00000049580.13	Tsku	chr7	protein_coding	tsukushi, small leucine rich proteoglycan
novel_NIR_18349	chr7	98002823	98005145	-	98002823	98008565	A5SS	ENSMUST00000094161.11	novel	0.03	1	28	1	28	n	0.04	1	27	1	27	n	0.00	0	18	0	18	n	0.04	1	22	1	22	n	0.08	3	34	3	34	n	0.16	4	21	4	21	y	0.12	2	15	2	15	n	0.00	0	11	0	11	n	0.08	1	11	1	11	n	0.00	0	17	0	17	n	0.17	4	19	4	19	y	0.00	0	9	0	9	n	ENSMUSG00000049580.13	Tsku	chr7	protein_coding	tsukushi, small leucine rich proteoglycan
novel_NIR_18350	chr7	98002823	98009228	-	98002337	98009228	A3SS	ENSMUST00000179780.3	novel	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.60	3	2	3	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000049580.13	Tsku	chr7	protein_coding	tsukushi, small leucine rich proteoglycan
novel_NIR_18351	chr7	98002823	98010449	-	98002337	98010449	A3SS	ENSMUST00000206414.2	novel	0.14	6	38	6	38	n	0.12	4	28	4	28	n	0.18	6	28	6	28	y	0.10	3	27	3	27	n	0.30	6	14	6	14	y	0.17	6	29	6	29	y	0.14	2	12	2	12	n	0.15	2	11	2	11	y	0.17	1	5	1	5	n	0.24	8	26	8	26	y	0.00	0	13	0	13	n	0.20	1	4	1	4	n	ENSMUSG00000049580.13	Tsku	chr7	protein_coding	tsukushi, small leucine rich proteoglycan
novel_NIR_18352	chr7	98002823	98010449	-	98002823;98008674	98008565;98010449	ES	ENSMUST00000094161.11	novel	0.24	6	19.0	6	28;10	y	0.22	4	14.5	4	27;2	y	0.36	6	10.5	6	18;3	y	0.18	3	14.0	3	22;6	y	0.21	6	22.5	6	34;11	y	0.32	6	12.5	6	21;4	y	0.17	2	9.5	2	15;4	y	0.27	2	5.5	2	11;0	y	0.13	1	6.5	1	11;2	n	0.43	8	10.5	8	17;4	y	0.00	0	11.0	0	19;3	n	0.17	1	5.0	1	9;1	n	ENSMUSG00000049580.13	Tsku	chr7	protein_coding	tsukushi, small leucine rich proteoglycan
novel_NIR_18353	chr7	98002823	98010449	-	98008674	98010449	A3SS&ES	ENSMUST00000164726.8	novel	0.38	6	10	6	10	y	0.67	4	2	4	2	y	0.67	6	3	6	3	y	0.33	3	6	3	6	y	0.35	6	11	6	11	y	0.60	6	4	6	4	y	0.33	2	4	2	4	y	1.00	2	0	2	0	y	0.33	1	2	1	2	n	0.67	8	4	8	4	y	0.00	0	3	0	3	n	0.50	1	1	1	1	n	ENSMUSG00000049580.13	Tsku	chr7	protein_coding	tsukushi, small leucine rich proteoglycan
novel_NIR_18354	chr7	98002823;98009365	98009228;98010449	-	98002823;98008674	98008565;98010449	MXE	ENSMUST00000094161.11	novel	0.10	2.0	19.0	0;4	28;10	n	0.03	0.5	14.5	1;0	27;2	n	0.00	0.0	10.5	0;0	18;3	n	0.12	2.0	14.0	0;4	22;6	n	0.06	1.5	22.5	0;3	34;11	n	0.17	2.5	12.5	3;2	21;4	y	0.00	0.0	9.5	0;0	15;4	n	0.21	1.5	5.5	0;3	11;0	n	0.19	1.5	6.5	0;3	11;2	n	0.00	0.0	10.5	0;0	17;4	n	0.00	0.0	11.0	0;0	19;3	n	0.00	0.0	5.0	0;0	9;1	n	ENSMUSG00000049580.13	Tsku	chr7	protein_coding	tsukushi, small leucine rich proteoglycan
novel_NIR_18355	chr7	98002823;98009505	98009228;98010449	-	98002823;98008674	98008565;98010449	MXE	ENSMUST00000094161.11	novel	0.00	0.0	19.0	0;0	28;10	n	0.03	0.5	14.5	1;0	27;2	n	0.00	0.0	10.5	0;0	18;3	n	0.00	0.0	14.0	0;0	22;6	n	0.00	0.0	22.5	0;0	34;11	n	0.17	2.5	12.5	3;2	21;4	y	0.00	0.0	9.5	0;0	15;4	n	0.00	0.0	5.5	0;0	11;0	n	0.00	0.0	6.5	0;0	11;2	n	0.00	0.0	10.5	0;0	17;4	n	0.00	0.0	11.0	0;0	19;3	n	0.00	0.0	5.0	0;0	9;1	n	ENSMUSG00000049580.13	Tsku	chr7	protein_coding	tsukushi, small leucine rich proteoglycan
novel_NIR_18356	chr7	98008674	98010275	-	98008674	98009228	5pMXE	ENSMUST00000165901.8	novel	0.00	0	12	0	12	n	0.05	1	20	1	20	n	0.00	0	24	0	24	n	0.11	1	8	1	8	n	0.03	1	29	1	29	n	0.10	2	18	2	18	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.16	3	16	3	16	y	0.06	1	17	1	17	n	0.00	0	15	0	15	n	0.00	0	4	0	4	n	ENSMUSG00000049580.13	Tsku	chr7	protein_coding	tsukushi, small leucine rich proteoglycan
novel_NIR_18357	chr7	98008674	98010275	-	98008674	98010449	A5SS	ENSMUST00000094161.11	novel	0.00	0	10	0	10	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.14	1	6	1	6	n	0.08	1	11	1	11	n	0.33	2	4	2	4	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.60	3	2	3	2	y	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000049580.13	Tsku	chr7	protein_coding	tsukushi, small leucine rich proteoglycan
novel_NIR_18358	chr7	98008674;98009508	98009506;98010449	-	98008674	98010449	cassetteExon	ENSMUST00000094161.11	novel	0.00	0.0	10	0;0	10	n	0.20	0.5	2	1;0	2	n	0.33	1.5	3	0;3	3	n	0.00	0.0	6	0;0	6	n	0.15	2.0	11	2;2	11	y	0.11	0.5	4	0;1	4	n	0.00	0.0	4	0;0	4	n	1.00	0.5	0	0;1	0	n	0.20	0.5	2	0;1	2	n	0.00	0.0	4	0;0	4	n	0.00	0.0	3	0;0	3	n	0.00	0.0	1	0;0	1	n	ENSMUSG00000049580.13	Tsku	chr7	protein_coding	tsukushi, small leucine rich proteoglycan
novel_NIR_18359	chr7	98009365	98010449	-	98002337	98010449	A3SS	ENSMUST00000206414.2	novel	0.10	4	38	4	38	n	0.00	0	28	0	28	n	0.00	0	28	0	28	n	0.13	4	27	4	27	n	0.18	3	14	3	14	y	0.06	2	29	2	29	n	0.00	0	12	0	12	n	0.21	3	11	3	11	y	0.38	3	5	3	5	y	0.00	0	26	0	26	n	0.00	0	13	0	13	n	0.00	0	4	0	4	n	ENSMUSG00000049580.13	Tsku	chr7	protein_coding	tsukushi, small leucine rich proteoglycan
novel_NIR_18360	chr7	98009365	98010449	-	98008674	98010449	A3SS	ENSMUST00000094161.11	novel	0.29	4	10	4	10	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.40	4	6	4	6	y	0.21	3	11	3	11	y	0.33	2	4	2	4	n	0.00	0	4	0	4	n	1.00	3	0	3	0	y	0.60	3	2	3	2	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000049580.13	Tsku	chr7	protein_coding	tsukushi, small leucine rich proteoglycan
novel_NIR_18361	chr7	98009365	98010449	-	98008674	98010449	A3SS	ENSMUST00000164726.8	novel	0.29	4	10	4	10	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.40	4	6	4	6	n	0.21	3	11	3	11	n	0.33	2	4	2	4	y	0.00	0	4	0	4	n	1.00	3	0	3	0	n	0.60	3	2	3	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000049580.13	Tsku	chr7	protein_coding	tsukushi, small leucine rich proteoglycan
novel_NIR_18362	chr7	98009505	98010449	-	98008674	98010449	A3SS	ENSMUST00000164726.8	novel	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.33	2	4	2	4	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000049580.13	Tsku	chr7	protein_coding	tsukushi, small leucine rich proteoglycan
novel_NIR_18363	chr7	98009508	98010449	-	98008674	98010449	A3SS	ENSMUST00000094161.11	novel	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.50	3	3	3	3	y	0.00	0	6	0	6	n	0.15	2	11	2	11	n	0.20	1	4	1	4	n	0.00	0	4	0	4	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000049580.13	Tsku	chr7	protein_coding	tsukushi, small leucine rich proteoglycan
novel_NIR_18364	chr7	98042298	98043810	-	98042298	98061079	A5SS	ENSMUST00000206249.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000108449.2	Gm44507	chr7	lncRNA	predicted gene 44507
novel_NIR_18365	chr7	98056815	98061079	-	98042298	98061079	A3SS	ENSMUST00000206249.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000108449.2	Gm44507	chr7	lncRNA	predicted gene 44507
novel_NIR_18366	chr7	98242640	98243959	-	98240091	98243959	A3SS	ENSMUST00000038359.6	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.60	3	2	3	2	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000035401.10	Emsy	chr7	protein_coding	EMSY, BRCA2-interacting transcriptional repressor
novel_NIR_18367	chr7	98242640	98243959	-	98242873	98243959	A3SS	ENSMUST00000205911.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.50	3	3	3	3	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000035401.10	Emsy	chr7	protein_coding	EMSY, BRCA2-interacting transcriptional repressor
novel_NIR_18368	chr7	98242640	98243959	-	98243017	98243959	A3SS	ENSMUST00000205276.2	novel	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.38	3	5	3	5	y	0.00	0	2	0	2	n	0.00	0	17	0	17	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	ENSMUSG00000035401.10	Emsy	chr7	protein_coding	EMSY, BRCA2-interacting transcriptional repressor
novel_NIR_18369	chr7	98242640	98243959	-	98243192	98243959	3pMXE	ENSMUST00000205513.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.38	3	5	3	5	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000035401.10	Emsy	chr7	protein_coding	EMSY, BRCA2-interacting transcriptional repressor
novel_NIR_18370	chr7	98246387	98249879	-	98246391	98249879	A3SS	ENSMUST00000205276.2	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.22	2	7	2	7	y	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	ENSMUSG00000035401.10	Emsy	chr7	protein_coding	EMSY, BRCA2-interacting transcriptional repressor
novel_NIR_18371	chr7	98246387	98249879	-	98249000	98249879	A3SS&ES	ENSMUST00000038359.6	novel	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	ENSMUSG00000035401.10	Emsy	chr7	protein_coding	EMSY, BRCA2-interacting transcriptional repressor
novel_NIR_18372	chr7	98268676	98275673	-	98268676;98270747	98270598;98275673	ES	ENSMUST00000205276.2	novel	0.00	0	3.0	0	4;2	n	0.22	2	7.0	2	6;8	y	0.15	2	11.0	2	12;10	y	0.00	0	9.5	0	9;10	n	0.00	0	8.0	0	9;7	n	0.00	0	9.5	0	12;7	n	0.00	0	5.0	0	5;5	n	0.00	0	6.0	0	5;7	n	0.00	0	5.0	0	4;6	n	0.00	0	8.0	0	10;6	n	0.00	0	4.5	0	2;7	n	0.00	0	6.5	0	6;7	n	ENSMUSG00000035401.10	Emsy	chr7	protein_coding	EMSY, BRCA2-interacting transcriptional repressor
novel_NIR_18373	chr7	98356560	98359333	+	98357238	98359333	A5SS&ES	ENSMUST00000126356.8	novel	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	ENSMUSG00000030753.16	Thap12	chr7	protein_coding	THAP domain containing 12
novel_NIR_18374	chr7	98537793	98555699	-	98549210	98555699	A3SS&ES	ENSMUST00000209123.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000035354.10	Uvrag	chr7	protein_coding	UV radiation resistance associated gene
novel_NIR_18375	chr7	98814396	98817966	-	98814396	98818631	A5SS	ENSMUST00000208591.2	novel	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	2	0	2	0	n	1.00	6	0	6	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	n	1.00	6	0	6	0	y	1.00	2	0	2	0	n	1.00	1	0	1	0	n	ENSMUSG00000030747.6	Dgat2	chr7	protein_coding	diacylglycerol O-acyltransferase 2
novel_NIR_18376	chr7	98814396;98818210	98817966;98818905	-	98814396;98818728	98818631;98818905	MXE	ENSMUST00000208591.2	novel	1.00	2.5	0.0	5;0	0;0	n	1.00	0.5	0.0	1;0	0;0	n	1.00	0.5	0.0	1;0	0;0	n	1.00	2.0	0.0	4;0	0;0	n	1.00	2.0	0.0	2;2	0;0	y	1.00	3.0	0.0	6;0	0;0	n	1.00	1.5	0.0	3;0	0;0	n	1.00	1.5	0.0	1;2	0;0	n	1.00	2.0	0.0	3;1	0;0	n	1.00	3.0	0.0	6;0	0;0	n	1.00	1.5	0.0	2;1	0;0	n	1.00	0.5	0.0	1;0	0;0	n	ENSMUSG00000030747.6	Dgat2	chr7	protein_coding	diacylglycerol O-acyltransferase 2
novel_NIR_18377	chr7	98818210	98818905	-	98808244	98818905	A3SS	ENSMUST00000207491.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	ENSMUSG00000030747.6	Dgat2	chr7	protein_coding	diacylglycerol O-acyltransferase 2
novel_NIR_18378	chr7	98818210	98818905	-	98818215	98818905	A3SS	ENSMUST00000207893.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.25	2	6	2	6	y	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	ENSMUSG00000030747.6	Dgat2	chr7	protein_coding	diacylglycerol O-acyltransferase 2
novel_NIR_18379	chr7	98819033	98819242	-	98819033	98829423	A5SS	ENSMUST00000207611.2	novel	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	6	0	6	0	y	1.00	7	0	7	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	7	0	7	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	ENSMUSG00000030747.6	Dgat2	chr7	protein_coding	diacylglycerol O-acyltransferase 2
novel_NIR_18380	chr7	98819033	98819242	-	98819033	98831479	A5SS	ENSMUST00000207491.2	novel	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	6	0	6	0	y	1.00	7	0	7	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	0.88	7	1	7	1	y	1.00	4	0	4	0	y	0.00	0	1	0	1	n	1.00	3	0	3	0	y	0.75	3	1	3	1	y	0.67	4	2	4	2	y	ENSMUSG00000030747.6	Dgat2	chr7	protein_coding	diacylglycerol O-acyltransferase 2
novel_NIR_18381	chr7	98819033	98821621	-	98819033	98829423	A5SS	ENSMUST00000207611.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030747.6	Dgat2	chr7	protein_coding	diacylglycerol O-acyltransferase 2
novel_NIR_18382	chr7	98819033	98821621	-	98819033	98831479	A5SS	ENSMUST00000207491.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000030747.6	Dgat2	chr7	protein_coding	diacylglycerol O-acyltransferase 2
novel_NIR_18383	chr7	98819033	98831031	-	98819033	98829423	5pMXE	ENSMUST00000207611.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030747.6	Dgat2	chr7	protein_coding	diacylglycerol O-acyltransferase 2
novel_NIR_18384	chr7	98819033	98831031	-	98819033	98831479	A5SS	ENSMUST00000207491.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000030747.6	Dgat2	chr7	protein_coding	diacylglycerol O-acyltransferase 2
novel_NIR_18385	chr7	98819033	98831680	-	98819033	98829423	5pMXE	ENSMUST00000207611.2	novel	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	13	0	13	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030747.6	Dgat2	chr7	protein_coding	diacylglycerol O-acyltransferase 2
novel_NIR_18386	chr7	98819033	98831680	-	98819033	98831479	A5SS	ENSMUST00000207491.2	novel	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	0.00	0	1	0	1	n	1.00	13	0	13	0	y	0.00	0	1	0	1	n	1.00	7	0	7	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000030747.6	Dgat2	chr7	protein_coding	diacylglycerol O-acyltransferase 2
novel_NIR_18387	chr7	99091154	99097680	+	99091154;99097427	99097329;99097680	ES	ENSMUST00000037528.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2.0	0	2;2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	0.5	0	0;1	n	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	ENSMUSG00000035314.11	Gdpd5	chr7	protein_coding	glycerophosphodiester phosphodiesterase domain containing 5
novel_NIR_18388	chr7	99341100	99344245	-	99341100	99355718	A5SS	ENSMUST00000107088.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.17	1	5	1	5	n	0.75	6	2	6	2	y	0.83	5	1	5	1	y	0.20	1	4	1	4	n	0.00	0	5	0	5	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000030737.18	Slco2b1	chr7	protein_coding	solute carrier organic anion transporter family, member 2b1
novel_NIR_18389	chr7	99341100	99344245	-	99341100	99360470	A5SS	ENSMUST00000032985.11	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	6	0	6	0	y	1.00	5	0	5	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030737.18	Slco2b1	chr7	protein_coding	solute carrier organic anion transporter family, member 2b1
novel_NIR_18390	chr7	99341100	99344506	-	99341100	99355718	A5SS	ENSMUST00000107088.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.75	3	1	3	1	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000030737.18	Slco2b1	chr7	protein_coding	solute carrier organic anion transporter family, member 2b1
novel_NIR_18391	chr7	99341100	99344506	-	99341100	99360470	A5SS	ENSMUST00000032985.11	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030737.18	Slco2b1	chr7	protein_coding	solute carrier organic anion transporter family, member 2b1
novel_NIR_18392	chr7	99341100	99344767	-	99341100	99344270	A5SS&ES	ENSMUST00000208225.2	novel	0.10	4	36	4	36	n	0.38	10	16	10	16	y	0.32	12	26	12	26	y	0.20	10	40	10	40	y	0.22	11	40	11	40	y	0.12	2	15	2	15	n	0.21	13	49	13	49	y	0.42	17	23	17	23	y	0.12	6	43	6	43	n	0.08	6	73	6	73	n	0.20	10	40	10	40	y	0.25	17	51	17	51	y	ENSMUSG00000030737.18	Slco2b1	chr7	protein_coding	solute carrier organic anion transporter family, member 2b1
novel_NIR_18393	chr7	99341100	99344767	-	99341100	99344742	A5SS	ENSMUST00000107086.9	novel	0.09	4	41	4	41	n	0.21	10	37	10	37	y	0.52	12	11	12	11	y	0.10	10	95	10	95	n	0.12	11	84	11	84	n	0.13	2	13	2	13	n	0.22	13	47	13	47	y	0.33	17	34	17	34	y	0.12	6	42	6	42	n	0.07	6	78	6	78	n	0.15	10	55	10	55	y	0.24	17	54	17	54	y	ENSMUSG00000030737.18	Slco2b1	chr7	protein_coding	solute carrier organic anion transporter family, member 2b1
novel_NIR_18394	chr7	99341100	99344767	-	99341100	99355718	A5SS	ENSMUST00000107088.8	novel	1.00	4	0	4	0	y	1.00	10	0	10	0	y	0.71	12	5	12	5	y	0.83	10	2	10	2	y	0.92	11	1	11	1	y	0.33	2	4	2	4	y	0.72	13	5	13	5	n	1.00	17	0	17	0	y	1.00	6	0	6	0	y	0.86	6	1	6	1	y	0.91	10	1	10	1	y	0.94	17	1	17	1	y	ENSMUSG00000030737.18	Slco2b1	chr7	protein_coding	solute carrier organic anion transporter family, member 2b1
novel_NIR_18395	chr7	99341100	99344767	-	99341100	99360470	A5SS	ENSMUST00000032985.11	novel	1.00	4	0	4	0	y	1.00	10	0	10	0	y	1.00	12	0	12	0	y	1.00	10	0	10	0	y	1.00	11	0	11	0	y	1.00	2	0	2	0	y	1.00	13	0	13	0	y	1.00	17	0	17	0	y	1.00	6	0	6	0	y	1.00	6	0	6	0	y	1.00	10	0	10	0	y	1.00	17	0	17	0	y	ENSMUSG00000030737.18	Slco2b1	chr7	protein_coding	solute carrier organic anion transporter family, member 2b1
novel_NIR_18396	chr7	99341100	99344767	-	99341100;99344424	99344270;99344767	ES	ENSMUST00000137914.2	novel	0.18	4	18.0	4	36;0	y	0.56	10	8.0	10	16;0	y	0.48	12	13.0	12	26;0	y	0.32	10	21.0	10	40;2	y	0.35	11	20.5	11	40;1	y	0.21	2	7.5	2	15;0	y	0.35	13	24.5	13	49;0	y	0.59	17	12.0	17	23;1	y	0.22	6	21.5	6	43;0	y	0.14	6	36.5	6	73;0	n	0.33	10	20.5	10	40;1	y	0.40	17	25.5	17	51;0	y	ENSMUSG00000030737.18	Slco2b1	chr7	protein_coding	solute carrier organic anion transporter family, member 2b1
novel_NIR_18397	chr7	99341100	99344767	-	99341100;99344574	99344270;99344767	ES	ENSMUST00000145381.8	novel	0.16	4	21.5	4	36;7	y	0.54	10	8.5	10	16;1	y	0.47	12	13.5	12	26;1	y	0.29	10	24.5	10	40;9	y	0.31	11	24.5	11	40;9	y	0.19	2	8.5	2	15;2	y	0.32	13	28.0	13	49;7	y	0.54	17	14.5	17	23;6	y	0.21	6	23.0	6	43;3	y	0.13	6	39.0	6	73;5	n	0.30	10	23.5	10	40;7	y	0.39	17	26.5	17	51;2	y	ENSMUSG00000030737.18	Slco2b1	chr7	protein_coding	solute carrier organic anion transporter family, member 2b1
novel_NIR_18398	chr7	99341100	99344771	-	99341100	99355718	A5SS	ENSMUST00000107088.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.86	6	1	6	1	y	ENSMUSG00000030737.18	Slco2b1	chr7	protein_coding	solute carrier organic anion transporter family, member 2b1
novel_NIR_18399	chr7	99341100	99344771	-	99341100	99360470	A5SS	ENSMUST00000032985.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	ENSMUSG00000030737.18	Slco2b1	chr7	protein_coding	solute carrier organic anion transporter family, member 2b1
novel_NIR_18400	chr7	99344424	99344506	-	99344424	99344742	A5SS	ENSMUST00000208225.2	novel	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.71	5	2	5	2	y	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.50	3	3	3	3	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.18	2	9	2	9	y	0.50	2	2	2	2	y	0.75	6	2	6	2	y	ENSMUSG00000030737.18	Slco2b1	chr7	protein_coding	solute carrier organic anion transporter family, member 2b1
novel_NIR_18401	chr7	99344424	99344506	-	99344424	99344767	A5SS	ENSMUST00000137914.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.71	5	2	5	2	y	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.67	2	1	2	1	y	1.00	6	0	6	0	y	ENSMUSG00000030737.18	Slco2b1	chr7	protein_coding	solute carrier organic anion transporter family, member 2b1
novel_NIR_18402	chr7	99344574	99344771	-	99344574	99344742	A5SS	ENSMUST00000207090.2	novel	0.08	1	11	1	11	n	0.14	1	6	1	6	n	0.10	1	9	1	9	n	0.21	6	22	6	22	y	0.43	9	12	9	12	y	0.00	0	7	0	7	n	0.34	11	21	11	21	y	0.06	1	16	1	16	n	0.10	2	18	2	18	n	0.23	9	31	9	31	y	0.44	7	9	7	9	y	0.14	4	25	4	25	n	ENSMUSG00000030737.18	Slco2b1	chr7	protein_coding	solute carrier organic anion transporter family, member 2b1
novel_NIR_18403	chr7	99344574	99344771	-	99344574	99344767	A5SS	ENSMUST00000145381.8	novel	0.12	1	7	1	7	n	0.50	1	1	1	1	n	0.50	1	1	1	1	n	0.40	6	9	6	9	y	0.50	9	9	9	9	y	0.00	0	2	0	2	n	0.61	11	7	11	7	y	0.14	1	6	1	6	n	0.40	2	3	2	3	y	0.64	9	5	9	5	y	0.50	7	7	7	7	y	0.67	4	2	4	2	y	ENSMUSG00000030737.18	Slco2b1	chr7	protein_coding	solute carrier organic anion transporter family, member 2b1
novel_NIR_18404	chr7	99349423	99354398	+	99349423	99350096	A3SS&ES	ENSMUST00000208250.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	ENSMUSG00000109559.2	Gm34280	chr7	lncRNA	predicted gene, 34280
novel_NIR_18405	chr7	99354945	99355712	+	99354945	99360424	A3SS	ENSMUST00000208250.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000109559.2	Gm34280	chr7	lncRNA	predicted gene, 34280
novel_NIR_18406	chr7	99498266	99507614	-	99498266	99498364	A5SS&ES	ENSMUST00000208477.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000035227.8	Spcs2	chr7	protein_coding	signal peptidase complex subunit 2 homolog (S. cerevisiae)
novel_NIR_18407	chr7	99498266	99507614	-	99498266	99505620	A5SS&ES	ENSMUST00000209032.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035227.8	Spcs2	chr7	protein_coding	signal peptidase complex subunit 2 homolog (S. cerevisiae)
novel_NIR_18408	chr7	99498266	99507614	-	99498266	99511592	A5SS	ENSMUST00000207580.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035227.8	Spcs2	chr7	protein_coding	signal peptidase complex subunit 2 homolog (S. cerevisiae)
novel_NIR_18409	chr7	99498266	99507614	-	99498266	99512028	A5SS	ENSMUST00000207137.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035227.8	Spcs2	chr7	protein_coding	signal peptidase complex subunit 2 homolog (S. cerevisiae)
novel_NIR_18410	chr7	99498266	99507614	-	99498266	99512435	A5SS	ENSMUST00000207063.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035227.8	Spcs2	chr7	protein_coding	signal peptidase complex subunit 2 homolog (S. cerevisiae)
novel_NIR_18411	chr7	99592312	99595674	-	99592312	99604674	A5SS	ENSMUST00000080817.6	novel	0.12	4	29	4	29	n	0.24	5	16	5	16	y	0.04	1	26	1	26	n	0.10	5	46	5	46	n	0.15	5	29	5	29	y	0.00	0	21	0	21	n	0.03	1	32	1	32	n	0.00	0	29	0	29	n	0.00	0	29	0	29	n	0.00	0	34	0	34	n	0.00	0	28	0	28	n	0.00	0	26	0	26	n	ENSMUSG00000058761.6	Rnf169	chr7	protein_coding	ring finger protein 169
novel_NIR_18412	chr7	99604747	99609282	-	99604747	99614449	A5SS	ENSMUST00000174264.2	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000058761.6	Rnf169	chr7	protein_coding	ring finger protein 169
novel_NIR_18413	chr7	99604747	99614445	-	99604747	99614449	A5SS	ENSMUST00000174264.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000058761.6	Rnf169	chr7	protein_coding	ring finger protein 169
novel_NIR_18414	chr7	99604747	99614445	-	99604747	99629179	A5SS	ENSMUST00000080817.6	novel	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.15	3	17	3	17	y	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	ENSMUSG00000058761.6	Rnf169	chr7	protein_coding	ring finger protein 169
novel_NIR_18415	chr7	99742691	99745580	-	99742688	99745580	A3SS	ENSMUST00000032969.14	novel	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.00	0	18	0	18	n	0.15	2	11	2	11	y	0.00	0	12	0	12	n	0.15	2	11	2	11	y	0.00	0	16	0	16	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	ENSMUSG00000030726.17	Pold3	chr7	protein_coding	polymerase (DNA-directed), delta 3, accessory subunit
novel_NIR_18416	chr7	99827973	99831889	+	99827973	99830358	A3SS&ES	ENSMUST00000049333.13	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000035165.15	Kcne3	chr7	protein_coding	potassium voltage-gated channel, Isk-related subfamily, gene 3
novel_NIR_18417	chr7	99827973	99831889	+	99827973	99833345	A3SS	ENSMUST00000207995.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035165.15	Kcne3	chr7	protein_coding	potassium voltage-gated channel, Isk-related subfamily, gene 3
novel_NIR_18418	chr7	99827973	99831889	+	99827973;99830481	99830343;99831889	ES	ENSMUST00000208260.2	novel	0.00	0	1.0	0	1;1	n	0.00	0	2.0	0	0;4	n	0.57	2	1.5	2	0;3	y	-	-	-	-	-	-	0.00	0	2.5	0	2;3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	0.5	0	0;1	n	0.00	0	0.5	0	0;1	n	0.00	0	0.5	0	0;1	n	0.00	0	0.5	0	0;1	n	0.00	0	1.0	0	0;2	n	ENSMUSG00000035165.15	Kcne3	chr7	protein_coding	potassium voltage-gated channel, Isk-related subfamily, gene 3
novel_NIR_18419	chr7	99827973	99831889	+	99827973;99830481	99830358;99831889	ES	ENSMUST00000207358.2	novel	0.00	0	1.0	0	1;1	n	0.00	0	2.0	0	0;4	n	0.40	2	3.0	2	3;3	y	-	-	-	-	-	-	0.00	0	4.5	0	6;3	n	-	-	-	-	-	-	0.00	0	1.5	0	3;0	n	0.00	0	1.5	0	2;1	n	0.00	0	1.5	0	2;1	n	0.00	0	1.0	0	1;1	n	0.00	0	1.5	0	2;1	n	0.00	0	1.0	0	0;2	n	ENSMUSG00000035165.15	Kcne3	chr7	protein_coding	potassium voltage-gated channel, Isk-related subfamily, gene 3
novel_NIR_18420	chr7	99827973	99831889	+	99830481	99831889	A5SS&ES	ENSMUST00000208555.2	novel	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000035165.15	Kcne3	chr7	protein_coding	potassium voltage-gated channel, Isk-related subfamily, gene 3
novel_NIR_18421	chr8	10023807	10026794	-	10023807	10026031	5pMXE	ENSMUST00000095476.6	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.33	3	6	3	6	y	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000049717.10	Lig4	chr8	protein_coding	ligase IV, DNA, ATP-dependent
novel_NIR_18422	chr8	10023807	10026794	-	10023807	10027513	A5SS	ENSMUST00000170033.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000049717.10	Lig4	chr8	protein_coding	ligase IV, DNA, ATP-dependent
novel_NIR_18423	chr8	104954745	104954836	-	104953972	104954836	A3SS	ENSMUST00000212275.2	novel	0.86	6	1	6	1	y	1.00	1	0	1	0	n	0.43	3	4	3	4	y	0.50	3	3	3	3	y	0.00	0	2	0	2	n	0.80	4	1	4	1	y	0.82	9	2	9	2	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.75	6	2	6	2	y	1.00	1	0	1	0	n	ENSMUSG00000035824.8	Tk2	chr8	protein_coding	thymidine kinase 2, mitochondrial
novel_NIR_18424	chr8	10512195	10516895	+	10512195	10524624	A3SS	ENSMUST00000207477.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.21	3	11	3	11	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039057.12	Myo16	chr8	protein_coding	myosin XVI
novel_NIR_18425	chr8	105154751	105156047	-	105154813	105156047	A3SS	ENSMUST00000041769.8	novel	0.18	2	9	2	9	y	0.00	0	17	0	17	n	0.00	0	29	0	29	n	0.00	0	25	0	25	n	0.00	0	50	0	50	n	0.00	0	30	0	30	n	0.00	0	41	0	41	n	0.00	0	21	0	21	n	0.00	0	14	0	14	n	0.00	0	45	0	45	n	0.00	0	24	0	24	n	0.00	0	32	0	32	n	ENSMUSG00000035770.9	Dync1li2	chr8	protein_coding	dynein, cytoplasmic 1 light intermediate chain 2
novel_NIR_18426	chr8	105239881	105242761	-	105237899	105242761	A3SS	ENSMUST00000161411.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000031878.19	Nae1	chr8	protein_coding	NEDD8 activating enzyme E1 subunit 1
novel_NIR_18427	chr8	105318227	105325239	+	105318227	105320112	A3SS	ENSMUST00000059588.8	novel	0.10	2	19	2	19	n	0.07	1	14	1	14	n	0.07	1	14	1	14	n	0.04	2	45	2	45	n	0.06	1	16	1	16	n	0.00	0	7	0	7	n	0.00	0	23	0	23	n	0.00	0	8	0	8	n	0.00	0	21	0	21	n	0.00	0	24	0	24	n	0.16	3	16	3	16	y	0.00	0	19	0	19	n	ENSMUSG00000048371.9	Pdp2	chr8	protein_coding	pyruvate dehyrogenase phosphatase catalytic subunit 2
novel_NIR_18428	chr8	105318227	105326919	+	105318227	105320112	3pMXE	ENSMUST00000059588.8	novel	0.00	0	19	0	19	n	0.07	1	14	1	14	n	0.00	0	14	0	14	n	0.00	0	45	0	45	n	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.08	2	23	2	23	n	0.00	0	8	0	8	n	0.22	6	21	6	21	y	0.04	1	24	1	24	n	0.00	0	16	0	16	n	0.00	0	19	0	19	n	ENSMUSG00000048371.9	Pdp2	chr8	protein_coding	pyruvate dehyrogenase phosphatase catalytic subunit 2
novel_NIR_18429	chr8	105464182	105465290	+	105464182	105465662	A3SS	ENSMUST00000164182.3	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.94	29	2	29	2	y	ENSMUSG00000055730.17	Ces2a	chr8	protein_coding	carboxylesterase 2A
novel_NIR_18430	chr8	105597981	105598244	+	105597981	105598246	A3SS	ENSMUST00000043209.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000031884.11	Ces2d-ps	chr8	unprocessed_pseudogene	carboxylesterase 2D, pseudogene
novel_NIR_18431	chr8	105598595	105598707	+	105598595	105598815	A3SS	ENSMUST00000043209.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031884.11	Ces2d-ps	chr8	unprocessed_pseudogene	carboxylesterase 2D, pseudogene
novel_NIR_18432	chr8	105777247	105778108	+	105777247	105778364	A3SS	ENSMUST00000213054.2	novel	0.00	0	129	0	129	n	0.00	0	89	0	89	n	0.00	0	12	0	12	n	0.00	0	144	0	144	n	0.00	0	250	0	250	n	0.00	0	38	0	38	n	0.00	0	154	0	154	n	0.28	27	71	27	71	y	0.00	0	209	0	209	n	0.00	0	231	0	231	n	0.00	0	211	0	211	n	0.00	0	204	0	204	n	ENSMUSG00000069922.13	Ces3a	chr8	protein_coding	carboxylesterase 3A
novel_NIR_18433	chr8	105783163	105783990	+	105783163	105783271	3pMXE	ENSMUST00000212481.2	novel	0.02	1	40	1	40	n	0.00	0	29	0	29	n	0.00	0	1	0	1	n	0.05	2	41	2	41	n	0.00	0	44	0	44	n	-	-	-	-	-	-	0.04	2	52	2	52	n	0.00	0	6	0	6	n	0.18	9	42	9	42	y	0.17	11	52	11	52	y	0.22	11	40	11	40	y	0.18	7	32	7	32	y	ENSMUSG00000069922.13	Ces3a	chr8	protein_coding	carboxylesterase 3A
novel_NIR_18434	chr8	105783163	105784139	+	105783163	105783271	3pMXE	ENSMUST00000212481.2	novel	0.00	0	40	0	40	n	0.00	0	29	0	29	n	0.00	0	1	0	1	n	0.00	0	41	0	41	n	0.00	0	44	0	44	n	-	-	-	-	-	-	0.00	0	52	0	52	n	0.00	0	6	0	6	n	0.00	0	42	0	42	n	0.00	0	52	0	52	n	0.56	51	40	51	40	y	0.00	0	32	0	32	n	ENSMUSG00000069922.13	Ces3a	chr8	protein_coding	carboxylesterase 3A
novel_NIR_18435	chr8	105783163	105784368	+	105783163	105783271	3pMXE	ENSMUST00000212481.2	novel	0.00	0	40	0	40	n	0.09	3	29	3	29	n	0.00	0	1	0	1	n	0.00	0	41	0	41	n	0.00	0	44	0	44	n	1.00	1	0	1	0	n	0.00	0	52	0	52	n	0.14	1	6	1	6	n	0.00	0	42	0	42	n	0.19	12	52	12	52	y	0.02	1	40	1	40	n	0.33	16	32	16	32	y	ENSMUSG00000069922.13	Ces3a	chr8	protein_coding	carboxylesterase 3A
novel_NIR_18436	chr8	105783163	105819237	+	105783163	105783271	3pMXE	ENSMUST00000212481.2	novel	0.17	8	40	8	40	y	0.03	1	29	1	29	n	0.00	0	1	0	1	n	0.05	2	41	2	41	n	0.04	2	44	2	44	n	-	-	-	-	-	-	0.05	3	52	3	52	n	0.00	0	6	0	6	n	0.05	2	42	2	42	n	0.07	4	52	4	52	n	0.07	3	40	3	40	n	0.00	0	32	0	32	n	ENSMUSG00000069922.13	Ces3a	chr8	protein_coding	carboxylesterase 3A
novel_NIR_18437	chr8	105783163	105819527	+	105783163	105783271	3pMXE	ENSMUST00000212481.2	novel	0.00	0	40	0	40	n	0.06	2	29	2	29	n	0.00	0	1	0	1	n	0.15	7	41	7	41	y	0.12	6	44	6	44	n	-	-	-	-	-	-	0.00	0	52	0	52	n	0.00	0	6	0	6	n	0.00	0	42	0	42	n	0.00	0	52	0	52	n	0.25	13	40	13	40	y	0.00	0	32	0	32	n	ENSMUSG00000069922.13	Ces3a	chr8	protein_coding	carboxylesterase 3A
novel_NIR_18438	chr8	105818216	105819412	+	105818216	105819237	A3SS&ES	ENSMUST00000173088.2	novel	0.19	11	47	11	47	y	0.00	0	36	0	36	n	0.00	0	7	0	7	n	0.11	6	51	6	51	n	0.08	8	94	8	94	n	0.11	1	8	1	8	n	0.21	12	45	12	45	y	0.00	0	28	0	28	n	0.19	9	38	9	38	y	0.22	15	52	15	52	y	0.22	17	59	17	59	y	0.13	10	67	10	67	n	ENSMUSG00000062181.15	Ces3b	chr8	protein_coding	carboxylesterase 3B
novel_NIR_18439	chr8	105818216	105819527	+	105818290	105819527	A5SS	ENSMUST00000074403.13	novel	0.05	2	38	2	38	n	0.02	1	41	1	41	n	0.25	1	3	1	3	n	0.02	1	41	1	41	n	0.15	3	17	3	17	y	0.00	0	3	0	3	n	0.07	2	25	2	25	n	0.00	0	8	0	8	n	0.04	2	46	2	46	n	0.02	1	41	1	41	n	0.00	0	61	0	61	n	0.00	0	43	0	43	n	ENSMUSG00000062181.15	Ces3b	chr8	protein_coding	carboxylesterase 3B
novel_NIR_18440	chr8	105818290	105818401	+	105818290	105819527	A3SS	ENSMUST00000074403.13	novel	0.12	5	38	5	38	n	0.05	2	41	2	41	n	0.00	0	3	0	3	n	0.02	1	41	1	41	n	0.62	28	17	28	17	y	0.25	1	3	1	3	n	0.04	1	25	1	25	n	0.11	1	8	1	8	n	0.12	6	46	6	46	n	0.05	2	41	2	41	n	0.08	5	61	5	61	n	0.33	21	43	21	43	y	ENSMUSG00000062181.15	Ces3b	chr8	protein_coding	carboxylesterase 3B
novel_NIR_18441	chr8	105818290	105819412	+	105818290	105819527	A3SS	ENSMUST00000074403.13	novel	0.37	22	38	22	38	y	0.13	6	41	6	41	n	0.25	1	3	1	3	n	0.05	2	41	2	41	n	0.45	14	17	14	17	y	0.00	0	3	0	3	n	0.29	10	25	10	25	y	0.43	6	8	6	8	y	0.26	16	46	16	46	y	0.28	16	41	16	41	y	0.26	21	61	21	61	y	0.43	32	43	32	43	y	ENSMUSG00000062181.15	Ces3b	chr8	protein_coding	carboxylesterase 3B
novel_NIR_18442	chr8	105818290	105819420	+	105818290	105819527	A3SS	ENSMUST00000074403.13	novel	0.07	3	38	3	38	n	0.02	1	41	1	41	n	0.00	0	3	0	3	n	0.07	3	41	3	41	n	0.15	3	17	3	17	y	0.00	0	3	0	3	n	0.29	10	25	10	25	y	0.00	0	8	0	8	n	0.02	1	46	1	46	n	0.05	2	41	2	41	n	0.06	4	61	4	61	n	0.16	8	43	8	43	y	ENSMUSG00000062181.15	Ces3b	chr8	protein_coding	carboxylesterase 3B
novel_NIR_18443	chr8	105873871	105875003	+	105873871;105874828	105874700;105875003	ES	ENSMUST00000161289.2	novel	0.00	0	3.0	0	2;4	n	0.00	0	2.5	0	4;1	n	0.00	0	1.5	0	1;2	n	0.00	0	9.5	0	11;8	n	0.20	2	8.0	2	7;9	y	0.00	0	1.5	0	1;2	n	0.00	0	6.5	0	6;7	n	0.00	0	5.5	0	9;2	n	0.00	0	6.0	0	9;3	n	0.00	0	8.5	0	9;8	n	0.00	0	13.5	0	13;14	n	0.00	0	3.0	0	2;4	n	ENSMUSG00000060560.9	Ces4a	chr8	protein_coding	carboxylesterase 4A
novel_NIR_18444	chr8	105921223	105927175	+	105921223	105942536	A3SS	ENSMUST00000109395.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000031885.15	Cbfb	chr8	protein_coding	core binding factor beta
novel_NIR_18445	chr8	105921223	105929087	+	105921223	105942536	A3SS	ENSMUST00000109395.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.57	4	3	4	3	y	1.00	1	0	1	0	n	0.78	7	2	7	2	y	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000031885.15	Cbfb	chr8	protein_coding	core binding factor beta
novel_NIR_18446	chr8	105966382	105967473	+	105966382	105967659	A3SS	ENSMUST00000124113.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000031889.10	D230025D16Rik	chr8	protein_coding	RIKEN cDNA D230025D16 gene
novel_NIR_18447	chr8	105991392	105993602	+	105991392	105993327	A3SS	ENSMUST00000036221.12	novel	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.12	1	7	1	7	n	0.23	3	10	3	10	y	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.50	2	2	2	2	y	0.00	0	7	0	7	n	0.44	4	5	4	5	y	ENSMUSG00000033313.12	Fbxl8	chr8	protein_coding	F-box and leucine-rich repeat protein 8
novel_NIR_18448	chr8	105996586	105997179	+	105996628	105997179	A5SS	ENSMUST00000173640.8	novel	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	16	0	16	n	0.15	2	11	2	11	y	0.00	0	11	0	11	n	ENSMUSG00000033249.11	Hsf4	chr8	protein_coding	heat shock transcription factor 4
novel_NIR_18449	chr8	106001545	106001629	+	106001545	106002136	A3SS	ENSMUST00000172525.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033249.11	Hsf4	chr8	protein_coding	heat shock transcription factor 4
novel_NIR_18450	chr8	106001545	106001649	+	106001545	106001675	A3SS	ENSMUST00000173640.8	novel	0.00	0	26	0	26	n	0.19	5	22	5	22	y	0.00	0	11	0	11	n	0.00	0	23	0	23	n	0.11	3	24	3	24	n	0.10	1	9	1	9	n	0.14	5	30	5	30	n	0.17	1	5	1	5	n	0.00	0	19	0	19	n	0.00	0	31	0	31	n	0.00	0	21	0	21	n	0.12	4	30	4	30	n	ENSMUSG00000033249.11	Hsf4	chr8	protein_coding	heat shock transcription factor 4
novel_NIR_18451	chr8	106001545	106001649	+	106001545	106002136	A3SS	ENSMUST00000172525.8	novel	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000033249.11	Hsf4	chr8	protein_coding	heat shock transcription factor 4
novel_NIR_18452	chr8	106001740	106002136	+	106001545	106002136	A5SS	ENSMUST00000172525.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000033249.11	Hsf4	chr8	protein_coding	heat shock transcription factor 4
novel_NIR_18453	chr8	106003245	106005603	+	106003245	106005606	A3SS	ENSMUST00000014920.8	novel	0.23	3	10	3	10	y	0.32	6	13	6	13	y	0.25	3	9	3	9	y	0.00	0	9	0	9	n	0.22	7	25	7	25	y	0.00	0	4	0	4	n	0.00	0	60	0	60	n	0.40	2	3	2	3	y	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.16	3	16	3	16	y	ENSMUSG00000014776.8	Nol3	chr8	protein_coding	nucleolar protein 3 (apoptosis repressor with CARD domain)
novel_NIR_18454	chr8	106017786	106018967	-	106017684	106018967	A3SS	ENSMUST00000057855.4	novel	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.29	2	5	2	5	y	0.11	1	8	1	8	n	0.20	1	4	1	4	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	ENSMUSG00000043251.7	Exoc3l	chr8	protein_coding	exocyst complex component 3-like
novel_NIR_18455	chr8	106019402	106019484	-	106019381	106019484	A3SS	ENSMUST00000057855.4	novel	0.20	2	8	2	8	y	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.11	1	8	1	8	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	19	0	19	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	ENSMUSG00000043251.7	Exoc3l	chr8	protein_coding	exocyst complex component 3-like
novel_NIR_18456	chr8	106024507	106024917	+	106024507	106024704	3pMXE	ENSMUST00000212037.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.75	3	1	3	1	y	ENSMUSG00000014859.10	E2f4	chr8	protein_coding	E2F transcription factor 4
novel_NIR_18457	chr8	106032639	106033010	+	106032639	106033228	A3SS	ENSMUST00000212046.2	novel	0.33	1	2	1	2	n	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.29	2	5	2	5	y	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000014791.11	Elmo3	chr8	protein_coding	engulfment and cell motility 3
novel_NIR_18458	chr8	106049998	106052514	-	106049998	106052859	A5SS	ENSMUST00000209964.2	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.00	0	6	0	6	n	0.33	3	6	3	6	y	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.12	1	7	1	7	n	ENSMUSG00000041679.10	Lrrc29	chr8	protein_coding	leucine rich repeat containing 29
novel_NIR_18459	chr8	106055090	106055222	+	106055090	106055404	A3SS	ENSMUST00000109372.3	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.35	6	11	6	11	n	0.75	3	1	3	1	n	0.67	4	2	4	2	n	0.20	2	8	2	8	y	0.60	3	2	3	2	n	0.30	3	7	3	7	y	0.75	3	1	3	1	n	1.00	12	0	12	0	n	1.00	8	0	8	0	y	0.90	9	1	9	1	y	ENSMUSG00000014856.13	Tmem208	chr8	protein_coding	transmembrane protein 208
novel_NIR_18460	chr8	106055090	106055222	+	106055090	106061275	A3SS	ENSMUST00000098453.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	3	0	3	0	y	0.80	4	1	4	1	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	12	0	12	0	y	1.00	8	0	8	0	y	1.00	9	0	9	0	y	ENSMUSG00000014856.13	Tmem208	chr8	protein_coding	transmembrane protein 208
novel_NIR_18461	chr8	106055090;106055279	106055222;106055404	+	106055090	106055404	cassetteExon	ENSMUST00000109372.3	novel	0.27	1.5	4	0;3	4	n	0.00	0.0	2	0;0	2	n	0.31	5.0	11	6;4	11	y	0.67	2.0	1	3;1	1	n	0.64	3.5	2	4;3	2	y	0.11	1.0	8	2;0	8	n	0.56	2.5	2	3;2	2	y	0.18	1.5	7	3;0	7	n	0.67	2.0	1	3;1	1	n	1.00	8.0	0	12;4	0	y	1.00	4.0	0	8;0	0	n	0.82	4.5	1	9;0	1	n	ENSMUSG00000014856.13	Tmem208	chr8	protein_coding	transmembrane protein 208
novel_NIR_18462	chr8	106055116	106055222	+	106055116	106055240	A3SS	ENSMUST00000153146.9	novel	0.20	1	4	1	4	n	0.00	0	10	0	10	n	0.40	2	3	2	3	y	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.15	2	11	2	11	y	0.12	1	7	1	7	n	0.14	1	6	1	6	n	ENSMUSG00000014856.13	Tmem208	chr8	protein_coding	transmembrane protein 208
novel_NIR_18463	chr8	106055279	106055404	+	106055090	106055404	A5SS	ENSMUST00000109372.3	novel	0.43	3	4	3	4	y	0.00	0	2	0	2	n	0.27	4	11	4	11	n	0.50	1	1	1	1	n	0.60	3	2	3	2	n	0.00	0	8	0	8	n	0.50	2	2	2	2	n	0.00	0	7	0	7	n	0.50	1	1	1	1	n	1.00	4	0	4	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000014856.13	Tmem208	chr8	protein_coding	transmembrane protein 208
novel_NIR_18464	chr8	106056401	106056727	-	106056401;106056641	106056479;106056727	ES	ENSMUST00000014922.5	novel	0.00	0	16.0	0	18;14	n	0.00	0	8.5	0	7;10	n	0.11	1	8.0	1	11;5	n	0.00	0	8.0	0	8;8	n	0.00	0	16.5	0	24;9	n	0.00	0	11.0	0	11;11	n	0.00	0	27.5	0	30;25	n	0.00	0	7.5	0	10;5	n	0.00	0	5.5	0	8;3	n	0.15	2	11.5	2	12;11	y	0.00	0	13.0	0	15;11	n	0.00	0	13.0	0	17;9	n	ENSMUSG00000014778.11	Fhod1	chr8	protein_coding	formin homology 2 domain containing 1
novel_NIR_18465	chr8	10610352	10611011	+	10610352	10612049	A3SS	ENSMUST00000207477.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.64	7	4	7	4	y	-	-	-	-	-	-	-	-	-	-	-	-	0.43	3	4	3	4	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039057.12	Myo16	chr8	protein_coding	myosin XVI
novel_NIR_18466	chr8	106199905	106200116	-	106199872	106200116	A3SS	ENSMUST00000212109.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039199.7	Zdhhc1	chr8	protein_coding	zinc finger, DHHC domain containing 1
novel_NIR_18467	chr8	106199905	106200116	-	106199931	106200116	A3SS	ENSMUST00000212303.2	novel	0.22	2	7	2	7	y	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.20	1	4	1	4	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	ENSMUSG00000039199.7	Zdhhc1	chr8	protein_coding	zinc finger, DHHC domain containing 1
novel_NIR_18468	chr8	106200198	106202671	-	106200198	106202656	A5SS	ENSMUST00000212303.2	novel	0.33	3	6	3	6	y	0.33	2	4	2	4	y	0.00	0	7	0	7	n	0.14	1	6	1	6	n	0.47	7	8	7	8	y	0.00	0	1	0	1	n	0.33	3	6	3	6	y	-	-	-	-	-	-	0.67	4	2	4	2	y	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.43	3	4	3	4	y	ENSMUSG00000039199.7	Zdhhc1	chr8	protein_coding	zinc finger, DHHC domain containing 1
novel_NIR_18469	chr8	106210415	106212094	-	106210415	106210821	5pMXE	ENSMUST00000044286.6	novel	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.20	1	4	1	4	n	ENSMUSG00000039199.7	Zdhhc1	chr8	protein_coding	zinc finger, DHHC domain containing 1
novel_NIR_18470	chr8	106210415	106212094	-	106210415;106211059	106210821;106212094	ES	ENSMUST00000212303.2	novel	0.80	2	0.5	2	1;0	y	0.00	0	2.0	0	1;3	n	0.00	0	3.0	0	5;1	n	-	-	-	-	-	-	0.00	0	2.0	0	2;2	n	0.33	1	2.0	1	0;4	n	0.00	0	4.0	0	1;7	n	1.00	1	0.0	1	0;0	n	0.00	0	1.0	0	2;0	n	-	-	-	-	-	-	0.50	1	1.0	1	2;0	n	0.25	1	3.0	1	4;2	n	ENSMUSG00000039199.7	Zdhhc1	chr8	protein_coding	zinc finger, DHHC domain containing 1
novel_NIR_18471	chr8	106340005	106341031	+	106331982	106341031	A5SS	ENSMUST00000043531.10	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.10	1	9	1	9	n	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.27	3	8	3	8	y	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000038604.10	Ripor1	chr8	protein_coding	RHO family interacting cell polarization regulator 1
novel_NIR_18472	chr8	106370264	106379606	+	106370264	106393291	A3SS	ENSMUST00000132679.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000005698.16	Ctcf	chr8	protein_coding	CCCTC-binding factor
novel_NIR_18473	chr8	106370264	106380011	+	106370264	106393291	A3SS	ENSMUST00000132679.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000005698.16	Ctcf	chr8	protein_coding	CCCTC-binding factor
novel_NIR_18474	chr8	106406891	106408073	+	106406891	106408067	A3SS	ENSMUST00000132679.8	novel	0.08	4	44	4	44	n	0.15	7	40	7	40	y	0.12	6	45	6	45	n	0.15	8	44	8	44	y	0.15	10	55	10	55	y	0.10	4	38	4	38	n	0.00	0	48	0	48	n	0.00	0	32	0	32	n	0.00	0	33	0	33	n	0.08	5	61	5	61	n	0.16	5	26	5	26	y	0.12	7	50	7	50	n	ENSMUSG00000005698.16	Ctcf	chr8	protein_coding	CCCTC-binding factor
novel_NIR_18475	chr8	106427998	106428806	+	106427918	106428806	A5SS	ENSMUST00000212634.2	novel	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.20	1	4	1	4	n	0.33	2	4	2	4	y	0.20	2	8	2	8	y	0.00	0	3	0	3	n	0.08	1	11	1	11	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.11	1	8	1	8	n	0.00	0	11	0	11	n	ENSMUSG00000005699.17	Pard6a	chr8	protein_coding	par-6 family cell polarity regulator alpha
novel_NIR_18476	chr8	106427998	106428806	+	106427949	106428806	A5SS	ENSMUST00000098444.9	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.09	1	10	1	10	n	0.40	2	3	2	3	y	0.25	2	6	2	6	y	0.00	0	4	0	4	n	0.11	1	8	1	8	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.20	1	4	1	4	n	-	-	-	-	-	-	ENSMUSG00000005699.17	Pard6a	chr8	protein_coding	par-6 family cell polarity regulator alpha
novel_NIR_18477	chr8	106427998	106428806	+	106428435	106428806	5pMXE	ENSMUST00000093195.7	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	1	1	1	1	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000005699.17	Pard6a	chr8	protein_coding	par-6 family cell polarity regulator alpha
novel_NIR_18478	chr8	106449676	106450205	-	106449676	106454620	A5SS	ENSMUST00000155038.3	novel	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.29	2	5	2	5	y	0.18	2	9	2	9	y	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.17	1	5	1	5	n	0.00	0	8	0	8	n	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	ENSMUSG00000013150.16	Gfod2	chr8	protein_coding	glucose-fructose oxidoreductase domain containing 2
novel_NIR_18479	chr8	106449676	106453483	-	106449676	106454620	A5SS	ENSMUST00000155038.3	novel	0.00	0	3	0	3	n	0.17	2	10	2	10	y	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.20	1	4	1	4	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	ENSMUSG00000013150.16	Gfod2	chr8	protein_coding	glucose-fructose oxidoreductase domain containing 2
novel_NIR_18480	chr8	106614035	106614119	+	106614035	106614138	A3SS	ENSMUST00000040254.16	novel	0.00	0	21	0	21	n	0.00	0	16	0	16	n	0.19	5	21	5	21	y	0.07	1	14	1	14	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.07	1	13	1	13	n	0.00	0	13	0	13	n	0.00	0	20	0	20	n	0.00	0	13	0	13	n	0.08	1	11	1	11	n	0.00	0	19	0	19	n	ENSMUSG00000036270.17	Edc4	chr8	protein_coding	enhancer of mRNA decapping 4
novel_NIR_18481	chr8	106659884	106662395	-	106659884	106660411	5pMXE	ENSMUST00000034368.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031896.8	Ctrl	chr8	protein_coding	chymotrypsin-like
novel_NIR_18482	chr8	106723100	106723915	-	106723100	106732514	A5SS	ENSMUST00000227778.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000115768.2	Dpep2nb	chr8	protein_coding	Dpep2 neighbor
novel_NIR_18483	chr8	106786944	106805236	+	106785550	106805236	A5SS	ENSMUST00000212936.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000031902.11	Nfatc3	chr8	protein_coding	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3
novel_NIR_18484	chr8	106806373	106810466	+	106806373	106810443	A3SS	ENSMUST00000212936.2	novel	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.03	1	34	1	34	n	0.00	0	19	0	19	n	0.07	3	43	3	43	n	0.00	0	23	0	23	n	0.04	1	23	1	23	n	0.00	0	20	0	20	n	0.00	0	21	0	21	n	0.00	0	26	0	26	n	0.00	0	13	0	13	n	0.17	5	25	5	25	y	ENSMUSG00000031902.11	Nfatc3	chr8	protein_coding	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3
novel_NIR_18485	chr8	106843070	106854550	+	106846057	106854550	A5SS&ES	ENSMUST00000211991.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.29	2	5	2	5	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	ENSMUSG00000031902.11	Nfatc3	chr8	protein_coding	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3
novel_NIR_18486	chr8	106843206	106854550	+	106846057	106854550	A5SS&ES	ENSMUST00000211991.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	6	0	6	n	ENSMUSG00000031902.11	Nfatc3	chr8	protein_coding	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3
novel_NIR_18487	chr8	106862364	106862774	+	106862364	106863163	A3SS	ENSMUST00000137995.8	novel	0.45	5	6	5	6	y	0.40	6	9	6	9	n	0.00	0	7	0	7	n	0.26	6	17	6	17	y	0.39	9	14	9	14	n	0.00	0	4	0	4	n	0.22	6	21	6	21	n	0.18	2	9	2	9	y	0.53	8	7	8	7	n	0.47	8	9	8	9	n	0.12	2	15	2	15	n	0.32	9	19	9	19	y	ENSMUSG00000086390.8	1810019D21Rik	chr8	lncRNA	RIKEN cDNA 1810019D21 gene
novel_NIR_18488	chr8	106862364;106862799	106862774;106863163	+	106862364	106863163	cassetteExon	ENSMUST00000137995.8	novel	0.29	2.5	6	5;0	6	n	0.28	3.5	9	6;1	9	n	0.12	1.0	7	0;2	7	n	0.15	3.0	17	6;0	17	n	0.26	5.0	14	9;1	14	n	0.20	1.0	4	0;2	4	n	0.18	4.5	21	6;3	21	y	0.10	1.0	9	2;0	9	n	0.39	4.5	7	8;1	7	n	0.38	5.5	9	8;3	9	y	0.06	1.0	15	2;0	15	n	0.19	4.5	19	9;0	19	n	ENSMUSG00000086390.8	1810019D21Rik	chr8	lncRNA	RIKEN cDNA 1810019D21 gene
novel_NIR_18489	chr8	106862799	106863163	+	106862364	106863163	A5SS	ENSMUST00000137995.8	novel	0.00	0	6	0	6	n	0.10	1	9	1	9	n	0.22	2	7	2	7	y	0.00	0	17	0	17	n	0.07	1	14	1	14	n	0.33	2	4	2	4	y	0.12	3	21	3	21	n	0.00	0	9	0	9	n	0.12	1	7	1	7	n	0.25	3	9	3	9	n	0.00	0	15	0	15	n	0.00	0	19	0	19	n	ENSMUSG00000086390.8	1810019D21Rik	chr8	lncRNA	RIKEN cDNA 1810019D21 gene
novel_NIR_18490	chr8	106863320	106863802	+	106863320	106863799	A3SS	ENSMUST00000137995.8	novel	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.04	1	24	1	24	n	0.00	0	20	0	20	n	0.00	0	3	0	3	n	0.25	6	18	6	18	y	0.50	5	5	5	5	y	0.00	0	11	0	11	n	0.30	8	19	8	19	y	0.31	10	22	10	22	y	0.14	3	19	3	19	n	ENSMUSG00000086390.8	1810019D21Rik	chr8	lncRNA	RIKEN cDNA 1810019D21 gene
novel_NIR_18491	chr8	106887311	106889457	+	106887311;106887940	106887841;106889457	ES	ENSMUST00000212963.2	novel	0.00	0	12.5	0	0;25	n	0.00	0	12.5	0	0;25	n	0.18	2	9.0	2	1;17	y	0.00	0	21.0	0	0;42	n	0.00	0	28.0	0	2;54	n	0.00	0	8.0	0	1;15	n	0.00	0	16.5	0	0;33	n	0.00	0	11.5	0	0;23	n	0.00	0	15.0	0	0;30	n	0.00	0	22.0	0	3;41	n	0.00	0	21.0	0	2;40	n	0.00	0	18.0	0	0;36	n	ENSMUSG00000031903.8	Pla2g15	chr8	protein_coding	phospholipase A2, group XV
novel_NIR_18492	chr8	106919906	106921053	+	106919906;106920228	106920125;106921053	ES	ENSMUST00000034378.5	novel	0.00	0	1.5	0	3;0	n	0.00	0	0.5	0	0;1	n	0.00	0	16.5	0	16;17	n	-	-	-	-	-	-	0.00	0	1.0	0	0;2	n	0.00	0	2.5	0	2;3	n	0.00	0	9.5	0	12;7	n	0.00	0	4.0	0	4;4	n	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031904.6	Slc7a6	chr8	protein_coding	solute carrier family 7 (cationic amino acid transporter, y+ system), member 6
novel_NIR_18493	chr8	106928991	106930963	-	106928983	106930963	A3SS	ENSMUST00000035925.7	novel	0.31	26	57	26	57	y	0.37	37	62	37	62	y	0.21	14	54	14	54	y	0.21	20	75	20	75	y	0.42	42	59	42	59	y	0.30	15	35	15	35	y	0.42	48	65	48	65	y	0.20	11	43	11	43	y	0.19	11	48	11	48	y	0.31	39	85	39	85	y	0.23	19	65	19	65	y	0.32	29	62	29	62	y	ENSMUSG00000033106.7	Slc7a6os	chr8	protein_coding	solute carrier family 7, member 6 opposite strand
novel_NIR_18494	chr8	106931172	106934205	-	106931172	106937351	A5SS	ENSMUST00000212150.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033106.7	Slc7a6os	chr8	protein_coding	solute carrier family 7, member 6 opposite strand
novel_NIR_18495	chr8	106937289	106937351	-	106931172	106937351	A3SS	ENSMUST00000212150.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033106.7	Slc7a6os	chr8	protein_coding	solute carrier family 7, member 6 opposite strand
novel_NIR_18496	chr8	107545201	107570298	+	107545201	107576811	A3SS	ENSMUST00000048359.5	novel	0.13	2	13	2	13	n	0.10	2	19	2	19	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.07	2	28	2	28	n	0.45	5	6	5	6	n	0.23	6	20	6	20	y	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	18	0	18	n	0.12	2	14	2	14	n	ENSMUSG00000041949.7	Tango6	chr8	protein_coding	transport and golgi organization 6
novel_NIR_18497	chr8	107545201;107570417	107570298;107576811	+	107545201	107576811	cassetteExon	ENSMUST00000048359.5	novel	0.07	1.0	13	2;0	13	n	0.05	1.0	19	2;0	19	n	0.00	0.0	13	0;0	13	n	0.14	1.5	9	0;3	9	n	0.05	1.5	28	2;1	28	n	0.37	3.5	6	5;2	6	y	0.13	3.0	20	6;0	20	n	0.20	1.0	4	0;2	4	n	0.00	0.0	13	0;0	13	n	0.00	0.0	8	0;0	8	n	0.08	1.5	18	0;3	18	n	0.07	1.0	14	2;0	14	n	ENSMUSG00000041949.7	Tango6	chr8	protein_coding	transport and golgi organization 6
novel_NIR_18498	chr8	107570417	107576811	+	107545201	107576811	A5SS	ENSMUST00000048359.5	novel	0.00	0	13	0	13	n	0.00	0	19	0	19	n	0.00	0	13	0	13	n	0.25	3	9	3	9	y	0.03	1	28	1	28	n	0.25	2	6	2	6	n	0.00	0	20	0	20	n	0.33	2	4	2	4	y	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.14	3	18	3	18	n	0.00	0	14	0	14	n	ENSMUSG00000041949.7	Tango6	chr8	protein_coding	transport and golgi organization 6
novel_NIR_18499	chr8	107773903	107774207	-	107773903	107775415	A5SS	ENSMUST00000034391.4	novel	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.11	1	8	1	8	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	1.00	2	0	2	0	y	ENSMUSG00000031916.18	Cog8	chr8	protein_coding	component of oligomeric golgi complex 8
novel_NIR_18500	chr8	107773903	107774594	-	107773903	107775415	A5SS	ENSMUST00000034391.4	novel	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.11	1	8	1	8	n	1.00	1	0	1	0	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.33	1	2	1	2	n	0.20	1	4	1	4	n	0.30	3	7	3	7	y	0.00	0	6	0	6	n	-	-	-	-	-	-	ENSMUSG00000031916.18	Cog8	chr8	protein_coding	component of oligomeric golgi complex 8
novel_NIR_18501	chr8	107773903	107774726	-	107773903	107775415	A5SS	ENSMUST00000034391.4	novel	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.07	1	14	1	14	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.22	2	7	2	7	y	0.00	0	6	0	6	n	-	-	-	-	-	-	ENSMUSG00000031916.18	Cog8	chr8	protein_coding	component of oligomeric golgi complex 8
novel_NIR_18502	chr8	107773903	107774964	-	107773903	107775415	A5SS	ENSMUST00000034391.4	novel	0.38	3	5	3	5	y	0.00	0	5	0	5	n	0.07	1	14	1	14	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.12	2	15	2	15	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	-	-	-	-	-	-	ENSMUSG00000031916.18	Cog8	chr8	protein_coding	component of oligomeric golgi complex 8
novel_NIR_18503	chr8	107773903	107775438	-	107773903	107775415	A5SS	ENSMUST00000034391.4	novel	0.38	3	5	3	5	y	0.00	0	5	0	5	n	0.26	5	14	5	14	y	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.32	7	15	7	15	y	0.75	6	2	6	2	y	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.14	1	6	1	6	n	-	-	-	-	-	-	ENSMUSG00000031916.18	Cog8	chr8	protein_coding	component of oligomeric golgi complex 8
novel_NIR_18504	chr8	107799277	107803420	-	107799277	107799354	A5SS&ES	ENSMUST00000068388.15	novel	0.17	1	5	1	5	n	0.86	6	1	6	1	y	0.62	5	3	5	3	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.75	3	1	3	1	y	0.75	3	1	3	1	y	0.25	1	3	1	3	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	0.00	0	3	0	3	n	ENSMUSG00000031921.18	Terf2	chr8	protein_coding	telomeric repeat binding factor 2
novel_NIR_18505	chr8	107799277	107803420	-	107799277	107803242	A5SS	ENSMUST00000133925.8	novel	0.10	1	9	1	9	n	0.35	6	11	6	11	y	0.22	5	18	5	18	y	0.00	0	13	0	13	n	0.00	0	19	0	19	n	0.20	1	4	1	4	n	0.14	3	18	3	18	n	0.33	3	6	3	6	y	0.08	1	11	1	11	n	0.10	2	19	2	19	n	0.19	3	13	3	13	y	0.00	0	17	0	17	n	ENSMUSG00000031921.18	Terf2	chr8	protein_coding	telomeric repeat binding factor 2
novel_NIR_18506	chr8	107799277	107803420	-	107799277	107803511	A5SS	ENSMUST00000142616.8	novel	0.33	1	2	1	2	n	0.75	6	2	6	2	y	1.00	5	0	5	0	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.67	2	1	2	1	y	1.00	3	0	3	0	y	0.00	0	3	0	3	n	ENSMUSG00000031921.18	Terf2	chr8	protein_coding	telomeric repeat binding factor 2
novel_NIR_18507	chr8	107799430	107803242	-	107799277	107803242	A3SS	ENSMUST00000133925.8	novel	0.00	0	9	0	9	n	0.15	2	11	2	11	y	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.00	0	19	0	19	n	0.00	0	4	0	4	n	0.05	1	18	1	18	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	19	0	19	n	0.00	0	13	0	13	n	0.00	0	17	0	17	n	ENSMUSG00000031921.18	Terf2	chr8	protein_coding	telomeric repeat binding factor 2
novel_NIR_18508	chr8	107799430	107803242	-	107799430	107803511	A5SS	ENSMUST00000068388.15	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000031921.18	Terf2	chr8	protein_coding	telomeric repeat binding factor 2
novel_NIR_18509	chr8	107799430	107803420	-	107799430	107803511	A5SS	ENSMUST00000068388.15	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000031921.18	Terf2	chr8	protein_coding	telomeric repeat binding factor 2
novel_NIR_18510	chr8	108065580	108065722	+	108065580	108096030	A3SS	ENSMUST00000144100.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000003847.17	Nfat5	chr8	protein_coding	nuclear factor of activated T cells 5
novel_NIR_18511	chr8	108094865	108096030	+	108065580	108096030	A5SS	ENSMUST00000144100.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000003847.17	Nfat5	chr8	protein_coding	nuclear factor of activated T cells 5
novel_NIR_18512	chr8	10907740	10912988	-	10909890	10912988	3pMXE	ENSMUST00000207174.2	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	8	0	8	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000108961.2	Gm32540	chr8	lncRNA	predicted gene, 32540
novel_NIR_18513	chr8	10909890	10912982	-	10909890	10912988	A5SS	ENSMUST00000207174.2	novel	-	-	-	-	-	-	0.20	1	4	1	4	n	0.45	5	6	5	6	y	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.67	2	1	2	1	y	1.00	1	0	1	0	n	0.27	3	8	3	8	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000108961.2	Gm32540	chr8	lncRNA	predicted gene, 32540
novel_NIR_18514	chr8	10924445	10941457	-	10934713	10941457	3pMXE	ENSMUST00000208078.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.31	4	9	4	9	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	ENSMUSG00000108969.2	Gm45044	chr8	lncRNA	predicted gene 45044
novel_NIR_18515	chr8	10929985	10933048	-	10929985	10932412	5pMXE	ENSMUST00000207718.2	novel	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	9	0	9	0	y	1.00	1	0	1	0	n	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	6	0	6	0	y	ENSMUSG00000109473.2	B930025P03Rik	chr8	lncRNA	RIKEN cDNA B930025P03 gene
novel_NIR_18516	chr8	109441962	109526827	+	109430867	109526827	A5SS	ENSMUST00000188994.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000038872.11	Zfhx3	chr8	protein_coding	zinc finger homeobox 3
novel_NIR_18517	chr8	109441962	109526827	+	109441962;109521601	109518834;109526827	ES	ENSMUST00000043896.10	novel	0.00	0	1.0	0	1;1	n	0.00	0	0.5	0	0;1	n	0.00	0	0.5	0	1;0	n	0.50	2	2.0	2	0;4	y	0.00	0	5.0	0	3;7	n	-	-	-	-	-	-	0.00	0	3.0	0	1;5	n	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	0.00	0	1.5	0	1;2	n	0.00	0	2.0	0	3;1	n	0.00	0	2.5	0	3;2	n	ENSMUSG00000038872.11	Zfhx3	chr8	protein_coding	zinc finger homeobox 3
novel_NIR_18518	chr8	109441962	109526827	+	109521601	109526827	A5SS&ES	ENSMUST00000220518.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	2	4	2	4	y	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000038872.11	Zfhx3	chr8	protein_coding	zinc finger homeobox 3
novel_NIR_18519	chr8	10951789	10973199	+	10951789	10952968	3pMXE	ENSMUST00000207914.2	novel	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.26	5	14	5	14	y	0.00	0	4	0	4	n	0.30	3	7	3	7	y	0.12	2	14	2	14	n	0.00	0	4	0	4	n	0.13	3	20	3	20	n	0.17	1	5	1	5	n	0.33	2	4	2	4	y	0.00	0	4	0	4	n	0.13	2	13	2	13	n	ENSMUSG00000109089.2	4833411C07Rik	chr8	lncRNA	RIKEN cDNA 4833411C07 gene
novel_NIR_18520	chr8	10952041	10952968	+	10951789	10952968	A5SS	ENSMUST00000207914.2	novel	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.12	2	14	2	14	n	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.07	1	14	1	14	n	0.33	2	4	2	4	y	0.09	2	20	2	20	n	0.17	1	5	1	5	n	0.43	3	4	3	4	y	0.00	0	4	0	4	n	0.00	0	13	0	13	n	ENSMUSG00000109089.2	4833411C07Rik	chr8	lncRNA	RIKEN cDNA 4833411C07 gene
novel_NIR_18521	chr8	110288036	110288581	-	110288039	110288581	A3SS	ENSMUST00000042601.9	novel	0.52	11	10	11	10	y	0.50	2	2	2	2	y	0.41	14	20	14	20	y	0.36	5	9	5	9	y	0.21	6	22	6	22	y	0.40	6	9	6	9	y	0.33	4	8	4	8	y	0.29	6	15	6	15	y	0.67	10	5	10	5	y	0.14	3	19	3	19	n	0.33	7	14	7	14	y	0.31	4	9	4	9	y	ENSMUSG00000037993.9	Dhx38	chr8	protein_coding	DEAH (Asp-Glu-Ala-His) box polypeptide 38
novel_NIR_18522	chr8	110304194	110304378	-	110304194	110305089	A5SS	ENSMUST00000212018.2	novel	0.00	0	48	0	48	n	0.23	22	74	22	74	y	0.09	41	393	41	393	n	0.00	0	48	0	48	n	0.14	25	158	25	158	n	0.01	2	267	2	267	n	0.14	23	137	23	137	n	0.00	0	170	0	170	n	0.09	4	39	4	39	n	0.00	0	51	0	51	n	0.23	10	34	10	34	y	0.22	16	56	16	56	y	ENSMUSG00000031722.11	Hp	chr8	protein_coding	haptoglobin
novel_NIR_18523	chr8	110304194	110304378	-	110304194	110305582	A5SS	ENSMUST00000212918.2	novel	0.00	0	36	0	36	n	0.45	22	27	22	27	y	0.37	41	69	41	69	y	0.00	0	23	0	23	n	0.29	25	61	25	61	y	0.03	2	72	2	72	n	0.32	23	48	23	48	y	0.00	0	38	0	38	n	0.20	4	16	4	16	y	0.00	0	26	0	26	n	0.38	10	16	10	16	y	0.64	16	9	16	9	y	ENSMUSG00000031722.11	Hp	chr8	protein_coding	haptoglobin
novel_NIR_18524	chr8	110304194	110304760	-	110304194	110305582	A5SS	ENSMUST00000212918.2	novel	0.08	3	36	3	36	n	0.00	0	27	0	27	n	0.01	1	69	1	69	n	0.00	0	23	0	23	n	0.00	0	61	0	61	n	0.00	0	72	0	72	n	0.00	0	48	0	48	n	0.16	7	38	7	38	y	0.00	0	16	0	16	n	0.00	0	26	0	26	n	0.00	0	16	0	16	n	0.00	0	9	0	9	n	ENSMUSG00000031722.11	Hp	chr8	protein_coding	haptoglobin
novel_NIR_18525	chr8	110304194	110310024	-	110304194	110305089	5pMXE	ENSMUST00000212018.2	novel	0.06	3	48	3	48	n	0.15	13	74	13	74	y	0.25	131	393	131	393	y	0.02	1	48	1	48	n	0.09	15	158	15	158	n	0.16	49	267	49	267	y	0.14	23	137	23	137	n	0.21	46	170	46	170	y	0.00	0	39	0	39	n	0.07	4	51	4	51	n	0.03	1	34	1	34	n	0.00	0	56	0	56	n	ENSMUSG00000031722.11	Hp	chr8	protein_coding	haptoglobin
novel_NIR_18526	chr8	110304194	110310024	-	110304194	110305582	5pMXE	ENSMUST00000212918.2	novel	0.08	3	36	3	36	n	0.33	13	27	13	27	y	0.66	131	69	131	69	y	0.04	1	23	1	23	n	0.20	15	61	15	61	y	0.40	49	72	49	72	y	0.32	23	48	23	48	y	0.55	46	38	46	38	y	0.00	0	16	0	16	n	0.13	4	26	4	26	n	0.06	1	16	1	16	n	0.00	0	9	0	9	n	ENSMUSG00000031722.11	Hp	chr8	protein_coding	haptoglobin
novel_NIR_18527	chr8	110320058	110320563	-	110320062	110320563	A3SS	ENSMUST00000125222.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000031730.19	Dhodh	chr8	protein_coding	dihydroorotate dehydrogenase
novel_NIR_18528	chr8	110432196	110432989	+	110432495	110432989	A5SS	ENSMUST00000212964.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	ENSMUSG00000031728.11	Zfp821	chr8	protein_coding	zinc finger protein 821
novel_NIR_18529	chr8	110460377	110461937	-	110460374	110461937	A3SS	ENSMUST00000093162.4	novel	0.29	4	10	4	10	y	0.17	2	10	2	10	y	0.60	9	6	9	6	y	0.00	0	14	0	14	n	0.40	12	18	12	18	y	0.00	0	10	0	10	n	0.12	1	7	1	7	n	0.33	5	10	5	10	y	0.23	3	10	3	10	y	0.25	3	9	3	9	y	0.30	3	7	3	7	y	0.31	5	11	5	11	y	ENSMUSG00000069895.5	Atxn1l	chr8	protein_coding	ataxin 1-like
novel_NIR_18530	chr8	110713424	110718105	+	110717182	110718105	5pMXE	ENSMUST00000143741.2	novel	0.18	10	45	10	45	y	0.19	4	17	4	17	y	0.64	104	59	104	59	y	0.04	2	46	2	46	n	0.04	1	24	1	24	n	0.46	22	26	22	26	y	0.11	3	25	3	25	n	0.12	3	22	3	22	n	0.00	0	22	0	22	n	0.15	5	28	5	28	y	0.14	3	18	3	18	n	0.11	4	34	4	34	n	ENSMUSG00000001670.14	Tat	chr8	protein_coding	tyrosine aminotransferase
novel_NIR_18531	chr8	110809374	110810073	+	110809374	110810239	A3SS	ENSMUST00000058804.10	novel	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000044676.11	Zfp612	chr8	protein_coding	zinc finger protein 612
novel_NIR_18532	chr8	110809374	110810073	+	110809374	110810289	A3SS	ENSMUST00000212754.2	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.00	0	8	0	8	n	0.50	2	2	2	2	y	0.67	2	1	2	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000044676.11	Zfp612	chr8	protein_coding	zinc finger protein 612
novel_NIR_18533	chr8	110810105	110810289	+	110809374	110810289	A5SS	ENSMUST00000212754.2	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.33	1	2	1	2	n	0.33	2	4	2	4	y	ENSMUSG00000044676.11	Zfp612	chr8	protein_coding	zinc finger protein 612
novel_NIR_18534	chr8	111468964	111469276	-	111469080	111469276	A3SS	ENSMUST00000154803.2	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	1	0	1	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	ENSMUSG00000031750.16	Il34	chr8	protein_coding	interleukin 34
novel_NIR_18535	chr8	111552878;111556179	111556151;111558116	-	111552878	111558116	cassetteExon	ENSMUST00000042012.7	novel	0.12	3.0	21	4;2	21	n	0.05	1.0	20	1;1	20	n	0.05	2.5	45	5;0	45	n	0.09	2.5	25	3;2	25	n	0.21	9.0	33	10;8	33	y	0.02	0.5	29	1;0	29	n	0.06	1.5	22	3;0	22	n	0.02	1.0	42	2;0	42	n	0.20	4.0	16	4;4	16	y	0.07	3.5	44	5;2	44	n	0.12	2.0	15	3;1	15	n	0.11	3.0	24	4;2	24	n	ENSMUSG00000033732.11	Sf3b3	chr8	protein_coding	splicing factor 3b, subunit 3
novel_NIR_18536	chr8	111571231	111573335	-	111571231	111573307	A5SS	ENSMUST00000042012.7	novel	0.07	1	14	1	14	n	0.17	2	10	2	10	y	0.00	0	50	0	50	n	0.05	1	21	1	21	n	0.04	1	24	1	24	n	0.05	1	21	1	21	n	0.00	0	18	0	18	n	0.00	0	33	0	33	n	0.00	0	13	0	13	n	0.06	1	17	1	17	n	0.07	1	14	1	14	n	0.04	1	25	1	25	n	ENSMUSG00000033732.11	Sf3b3	chr8	protein_coding	splicing factor 3b, subunit 3
novel_NIR_18537	chr8	111576582	111577974	+	111576582	111578034	A3SS	ENSMUST00000172668.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000031753.17	Cog4	chr8	protein_coding	component of oligomeric golgi complex 4
novel_NIR_18538	chr8	111576582	111577974	+	111576582	111578918	A3SS	ENSMUST00000174723.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000031753.17	Cog4	chr8	protein_coding	component of oligomeric golgi complex 4
novel_NIR_18539	chr8	111578082	111578933	+	111578082	111580302	A3SS	ENSMUST00000174800.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	ENSMUSG00000031753.17	Cog4	chr8	protein_coding	component of oligomeric golgi complex 4
novel_NIR_18540	chr8	111580411	111584569	+	111580411	111608792	A3SS	ENSMUST00000174679.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031753.17	Cog4	chr8	protein_coding	component of oligomeric golgi complex 4
novel_NIR_18541	chr8	111590016	111592611	+	111590016	111593193	A3SS	ENSMUST00000173794.2	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031753.17	Cog4	chr8	protein_coding	component of oligomeric golgi complex 4
novel_NIR_18542	chr8	111593359	111594872	+	111593359	111594886	A3SS	ENSMUST00000172542.2	novel	0.14	1	6	1	6	n	0.21	3	11	3	11	y	1.00	2	0	2	0	y	0.00	0	15	0	15	n	0.40	2	3	2	3	y	-	-	-	-	-	-	1.00	6	0	6	0	y	0.00	0	2	0	2	n	1.00	3	0	3	0	y	1.00	5	0	5	0	y	0.00	0	13	0	13	n	1.00	12	0	12	0	y	ENSMUSG00000031753.17	Cog4	chr8	protein_coding	component of oligomeric golgi complex 4
novel_NIR_18543	chr8	111760173	111760350	+	111760173	111760272	A3SS	ENSMUST00000125268.2	novel	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.00	0	7	0	7	n	0.10	1	9	1	9	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.14	1	6	1	6	n	0.20	1	4	1	4	n	0.45	5	6	5	6	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000031960.15	Aars	chr8	protein_coding	alanyl-tRNA synthetase
novel_NIR_18544	chr8	111760540	111760839	+	111760540	111763541	A3SS	ENSMUST00000125268.2	novel	0.12	2	15	2	15	n	0.00	0	10	0	10	n	0.00	0	19	0	19	n	0.04	1	25	1	25	n	0.07	2	28	2	28	n	0.43	3	4	3	4	y	0.24	5	16	5	16	y	0.29	4	10	4	10	y	0.00	0	11	0	11	n	0.00	0	18	0	18	n	0.00	0	8	0	8	n	0.10	2	18	2	18	n	ENSMUSG00000031960.15	Aars	chr8	protein_coding	alanyl-tRNA synthetase
novel_NIR_18545	chr8	111760651	111763541	+	111760576	111763541	A5SS	ENSMUST00000142770.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.50	1	1	1	1	n	ENSMUSG00000031960.15	Aars	chr8	protein_coding	alanyl-tRNA synthetase
novel_NIR_18546	chr8	112060386	112064338	-	112060384	112064338	A3SS	ENSMUST00000145862.3	novel	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000012519.15	Mlkl	chr8	protein_coding	mixed lineage kinase domain-like
novel_NIR_18547	chr8	112060386	112064338	-	112060386	112064456	A5SS	ENSMUST00000056157.14	novel	0.12	1	7	1	7	n	0.30	3	7	3	7	y	0.09	2	21	2	21	n	0.00	0	7	0	7	n	0.08	1	11	1	11	n	0.09	1	10	1	10	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	ENSMUSG00000012519.15	Mlkl	chr8	protein_coding	mixed lineage kinase domain-like
novel_NIR_18548	chr8	112061439	112064338	-	112060384	112064338	A3SS	ENSMUST00000145862.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000012519.15	Mlkl	chr8	protein_coding	mixed lineage kinase domain-like
novel_NIR_18549	chr8	112236060	112248560	-	112232573	112248560	A3SS	ENSMUST00000038193.15	novel	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.20	2	8	2	8	y	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	ENSMUSG00000031959.16	Wdr59	chr8	protein_coding	WD repeat domain 59
novel_NIR_18550	chr8	112263003	112335925	+	112264281	112335925	5pMXE	ENSMUST00000174454.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000033545.15	Znrf1	chr8	protein_coding	zinc and ring finger 1
novel_NIR_18551	chr8	112263003	112335925	+	112265098	112335925	5pMXE	ENSMUST00000174333.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	4	0	4	0	y	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	0.60	3	2	3	2	y	ENSMUSG00000033545.15	Znrf1	chr8	protein_coding	zinc and ring finger 1
novel_NIR_18552	chr8	112263003	112335925	+	112267956	112335925	5pMXE	ENSMUST00000173781.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	4	0	4	0	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.75	3	1	3	1	y	ENSMUSG00000033545.15	Znrf1	chr8	protein_coding	zinc and ring finger 1
novel_NIR_18553	chr8	112263003	112335925	+	112333480	112335925	5pMXE	ENSMUST00000173922.2	novel	0.00	0	28	0	28	n	0.00	0	27	0	27	n	0.00	0	23	0	23	n	0.20	4	16	4	16	y	0.00	0	31	0	31	n	0.00	0	14	0	14	n	0.00	0	21	0	21	n	0.18	2	9	2	9	y	0.00	0	15	0	15	n	0.00	0	24	0	24	n	0.00	0	25	0	25	n	0.06	3	44	3	44	n	ENSMUSG00000033545.15	Znrf1	chr8	protein_coding	zinc and ring finger 1
novel_NIR_18554	chr8	112264196	112264906	+	112264196	112345838	A3SS	ENSMUST00000171182.8	novel	0.00	0	3	0	3	n	0.10	1	9	1	9	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.12	1	7	1	7	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	3	3	3	3	y	0.00	0	8	0	8	n	0.00	0	8	0	8	n	ENSMUSG00000033545.15	Znrf1	chr8	protein_coding	zinc and ring finger 1
novel_NIR_18555	chr8	112264196	112267884	+	112264196	112333379	A3SS	ENSMUST00000174376.8	novel	0.00	0	21	0	21	n	0.16	3	16	3	16	y	0.00	0	12	0	12	n	0.33	5	10	5	10	y	0.09	2	20	2	20	n	0.00	0	9	0	9	n	0.20	3	12	3	12	y	0.00	0	10	0	10	n	0.08	1	12	1	12	n	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.14	4	24	4	24	n	ENSMUSG00000033545.15	Znrf1	chr8	protein_coding	zinc and ring finger 1
novel_NIR_18556	chr8	112264196	112267884	+	112264196	112345838	A3SS	ENSMUST00000171182.8	novel	0.00	0	3	0	3	n	0.25	3	9	3	9	y	0.00	0	8	0	8	n	1.00	5	0	5	0	y	0.50	2	2	2	2	y	-	-	-	-	-	-	0.30	3	7	3	7	y	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.33	4	8	4	8	y	ENSMUSG00000033545.15	Znrf1	chr8	protein_coding	zinc and ring finger 1
novel_NIR_18557	chr8	112264196	112305523	+	112264196	112333379	A3SS	ENSMUST00000174376.8	novel	0.09	2	21	2	21	n	0.00	0	16	0	16	n	0.14	2	12	2	12	n	0.00	0	10	0	10	n	0.26	7	20	7	20	n	0.10	1	9	1	9	n	0.20	3	12	3	12	y	0.09	1	10	1	10	n	0.20	3	12	3	12	n	0.15	3	17	3	17	y	0.09	1	10	1	10	n	0.08	2	24	2	24	n	ENSMUSG00000033545.15	Znrf1	chr8	protein_coding	zinc and ring finger 1
novel_NIR_18558	chr8	112264196	112305523	+	112264196	112345838	A3SS	ENSMUST00000171182.8	novel	0.40	2	3	2	3	y	0.00	0	9	0	9	n	0.20	2	8	2	8	y	-	-	-	-	-	-	0.78	7	2	7	2	y	1.00	1	0	1	0	n	0.30	3	7	3	7	y	1.00	1	0	1	0	n	0.75	3	1	3	1	y	0.50	3	3	3	3	y	0.11	1	8	1	8	n	0.20	2	8	2	8	y	ENSMUSG00000033545.15	Znrf1	chr8	protein_coding	zinc and ring finger 1
novel_NIR_18559	chr8	112264196	112317701	+	112264196	112333379	A3SS	ENSMUST00000174376.8	novel	0.05	1	21	1	21	n	0.00	0	16	0	16	n	0.08	1	12	1	12	n	0.00	0	10	0	10	n	0.05	1	20	1	20	n	0.18	2	9	2	9	y	0.14	2	12	2	12	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.00	0	17	0	17	n	0.17	2	10	2	10	n	0.00	0	24	0	24	n	ENSMUSG00000033545.15	Znrf1	chr8	protein_coding	zinc and ring finger 1
novel_NIR_18560	chr8	112264196	112317701	+	112264196	112345838	A3SS	ENSMUST00000171182.8	novel	0.25	1	3	1	3	n	0.00	0	9	0	9	n	0.11	1	8	1	8	n	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	2	0	2	0	y	0.22	2	7	2	7	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.20	2	8	2	8	y	0.00	0	8	0	8	n	ENSMUSG00000033545.15	Znrf1	chr8	protein_coding	zinc and ring finger 1
novel_NIR_18561	chr8	112264196	112326484	+	112264196	112345838	A3SS	ENSMUST00000171182.8	novel	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	ENSMUSG00000033545.15	Znrf1	chr8	protein_coding	zinc and ring finger 1
novel_NIR_18562	chr8	112264196	112385018	+	112370244	112385018	5pMXE	ENSMUST00000212072.2	novel	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.18	2	9	2	9	y	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	ENSMUSG00000055835.11	Zfp1	chr8	protein_coding	zinc finger protein 1
novel_NIR_18563	chr8	112264196;112305580	112305523;112333379	+	112264196	112333379	cassetteExon	ENSMUST00000174376.8	novel	0.05	1.0	21	2;0	21	n	0.00	0.0	16	0;0	16	n	0.08	1.0	12	2;0	12	n	0.20	2.5	10	0;5	10	n	0.15	3.5	20	7;0	20	n	0.05	0.5	9	1;0	9	n	0.11	1.5	12	3;0	12	n	0.05	0.5	10	1;0	10	n	0.20	3.0	12	3;3	12	y	0.08	1.5	17	3;0	17	n	0.05	0.5	10	1;0	10	n	0.04	1.0	24	2;0	24	n	ENSMUSG00000033545.15	Znrf1	chr8	protein_coding	zinc and ring finger 1
novel_NIR_18564	chr8	112267956	112333379	+	112264196	112333379	A5SS	ENSMUST00000174376.8	novel	0.00	0	21	0	21	n	0.00	0	16	0	16	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	20	0	20	n	0.10	1	9	1	9	n	0.00	0	12	0	12	n	0.17	2	10	2	10	y	0.00	0	12	0	12	n	0.06	1	17	1	17	n	0.09	1	10	1	10	n	0.08	2	24	2	24	n	ENSMUSG00000033545.15	Znrf1	chr8	protein_coding	zinc and ring finger 1
novel_NIR_18565	chr8	112267956	112333379	+	112265335	112333379	A5SS	ENSMUST00000173481.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000033545.15	Znrf1	chr8	protein_coding	zinc and ring finger 1
novel_NIR_18566	chr8	112267956	112333379	+	112267956	112335925	A3SS	ENSMUST00000173781.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.25	1	3	1	3	n	0.67	2	1	2	1	y	ENSMUSG00000033545.15	Znrf1	chr8	protein_coding	zinc and ring finger 1
novel_NIR_18567	chr8	112267956	112333379	+	112288867	112333379	5pMXE	ENSMUST00000173692.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	1.00	2	0	2	0	y	ENSMUSG00000033545.15	Znrf1	chr8	protein_coding	zinc and ring finger 1
novel_NIR_18568	chr8	112288867	112305523	+	112288867	112333379	A3SS	ENSMUST00000173692.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000033545.15	Znrf1	chr8	protein_coding	zinc and ring finger 1
novel_NIR_18569	chr8	112305580	112333379	+	112264196	112333379	A5SS	ENSMUST00000174376.8	novel	0.00	0	21	0	21	n	0.00	0	16	0	16	n	0.00	0	12	0	12	n	0.33	5	10	5	10	y	0.00	0	20	0	20	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.20	3	12	3	12	n	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.00	0	24	0	24	n	ENSMUSG00000033545.15	Znrf1	chr8	protein_coding	zinc and ring finger 1
novel_NIR_18570	chr8	112305580	112333379	+	112265335	112333379	A5SS	ENSMUST00000173481.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033545.15	Znrf1	chr8	protein_coding	zinc and ring finger 1
novel_NIR_18571	chr8	112305580	112333379	+	112288867	112333379	A5SS	ENSMUST00000173692.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000033545.15	Znrf1	chr8	protein_coding	zinc and ring finger 1
novel_NIR_18572	chr8	112317838	112333379	+	112265335	112333379	A5SS	ENSMUST00000173481.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033545.15	Znrf1	chr8	protein_coding	zinc and ring finger 1
novel_NIR_18573	chr8	112317838	112333379	+	112288867	112333379	A5SS	ENSMUST00000173692.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000033545.15	Znrf1	chr8	protein_coding	zinc and ring finger 1
novel_NIR_18574	chr8	112317838	112335925	+	112264281	112335925	A5SS	ENSMUST00000174454.8	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000033545.15	Znrf1	chr8	protein_coding	zinc and ring finger 1
novel_NIR_18575	chr8	112317838	112335925	+	112265098	112335925	A5SS	ENSMUST00000174333.8	novel	0.60	3	2	3	2	y	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	1	0	1	0	n	0.20	1	4	1	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	1.00	2	0	2	0	y	0.14	1	6	1	6	n	1.00	3	0	3	0	y	0.00	0	2	0	2	n	ENSMUSG00000033545.15	Znrf1	chr8	protein_coding	zinc and ring finger 1
novel_NIR_18576	chr8	112317838	112335925	+	112267956	112335925	A5SS	ENSMUST00000173781.2	novel	0.75	3	1	3	1	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.50	3	3	3	3	y	0.00	0	1	0	1	n	ENSMUSG00000033545.15	Znrf1	chr8	protein_coding	zinc and ring finger 1
novel_NIR_18577	chr8	112317838	112335925	+	112333480	112335925	A5SS&ES	ENSMUST00000174376.8	novel	0.10	3	28	3	28	n	0.00	0	27	0	27	n	0.04	1	23	1	23	n	0.06	1	16	1	16	n	0.03	1	31	1	31	n	0.00	0	14	0	14	n	0.00	0	21	0	21	n	0.18	2	9	2	9	y	0.12	2	15	2	15	n	0.04	1	24	1	24	n	0.11	3	25	3	25	n	0.00	0	44	0	44	n	ENSMUSG00000033545.15	Znrf1	chr8	protein_coding	zinc and ring finger 1
novel_NIR_18578	chr8	112345861	112348258	+	112345861	112348228	A3SS	ENSMUST00000173819.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033545.15	Znrf1	chr8	protein_coding	zinc and ring finger 1
novel_NIR_18579	chr8	112392836	112394849	+	112392836	112394364	A3SS&ES	ENSMUST00000212206.2	novel	0.33	1	2	1	2	n	-	-	-	-	-	-	0.20	1	4	1	4	n	-	-	-	-	-	-	0.40	2	3	2	3	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000055835.11	Zfp1	chr8	protein_coding	zinc finger protein 1
novel_NIR_18580	chr8	112392836	112396126	+	112392836	112394364	A3SS&ES	ENSMUST00000212206.2	novel	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000055835.11	Zfp1	chr8	protein_coding	zinc finger protein 1
novel_NIR_18581	chr8	112394941	112396123	+	112394470	112396123	A5SS	ENSMUST00000212206.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.60	3	2	3	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000055835.11	Zfp1	chr8	protein_coding	zinc finger protein 1
novel_NIR_18582	chr8	112593128	112596289	-	112593128	112596220	A5SS	ENSMUST00000034431.3	novel	0.14	2	12	2	12	n	0.09	1	10	1	10	n	0.28	14	36	14	36	y	0.05	1	18	1	18	n	0.31	8	18	8	18	y	0.27	4	11	4	11	y	0.20	3	12	3	12	y	0.30	3	7	3	7	y	0.14	1	6	1	6	n	0.23	5	17	5	17	y	0.36	5	9	5	9	y	0.21	3	11	3	11	y	ENSMUSG00000031953.3	Tmem170	chr8	protein_coding	transmembrane protein 170
novel_NIR_18583	chr8	112698823	112701727	-	112698823	112704671	A5SS	ENSMUST00000034427.12	novel	0.00	0	8	0	8	n	0.13	2	13	2	13	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	18	0	18	n	0.00	0	3	0	3	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.20	2	8	2	8	y	0.13	2	13	2	13	n	0.14	1	6	1	6	n	ENSMUSG00000031949.18	Adat1	chr8	protein_coding	adenosine deaminase, tRNA-specific 1
novel_NIR_18584	chr8	112706076	112713754	-	112706076;112709397	112708794;112713754	ES	ENSMUST00000034427.12	novel	0.00	0	11.5	0	12;11	n	0.00	0	7.0	0	10;4	n	0.00	0	7.0	0	8;6	n	0.00	0	11.0	0	11;11	n	0.17	2	10.0	2	10;10	y	0.00	0	4.0	0	5;3	n	0.00	0	8.5	0	11;6	n	0.00	0	6.5	0	7;6	n	0.00	0	9.5	0	6;13	n	0.00	0	10.5	0	12;9	n	0.00	0	7.5	0	10;5	n	0.00	0	6.0	0	7;5	n	ENSMUSG00000031949.18	Adat1	chr8	protein_coding	adenosine deaminase, tRNA-specific 1
novel_NIR_18585	chr8	112706076	112713754	-	112709397	112713754	A3SS&ES	ENSMUST00000120457.2	novel	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.17	2	10	2	10	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	ENSMUSG00000031949.18	Adat1	chr8	protein_coding	adenosine deaminase, tRNA-specific 1
novel_NIR_18586	chr8	112718637	112718813	-	112717044	112718813	A3SS	ENSMUST00000034427.12	novel	0.50	5	5	5	5	y	0.14	1	6	1	6	n	0.20	3	12	3	12	y	0.14	1	6	1	6	n	0.09	1	10	1	10	n	0.17	1	5	1	5	n	0.56	5	4	5	4	y	0.44	4	5	4	5	y	0.08	1	11	1	11	n	0.62	5	3	5	3	y	0.50	5	5	5	5	y	0.00	0	5	0	5	n	ENSMUSG00000031949.18	Adat1	chr8	protein_coding	adenosine deaminase, tRNA-specific 1
novel_NIR_18587	chr8	112735018	112736854	-	112735018	112735114	A5SS&ES	ENSMUST00000164470.3	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.22	2	7	2	7	y	0.44	4	5	4	5	y	0.11	1	8	1	8	n	0.75	3	1	3	1	y	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.10	1	9	1	9	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000031948.15	Kars	chr8	protein_coding	lysyl-tRNA synthetase
novel_NIR_18588	chr8	112735018	112736854	-	112735018	112737842	A5SS	ENSMUST00000093120.13	novel	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.07	2	28	2	28	n	0.12	4	28	4	28	n	0.06	1	16	1	16	n	0.17	3	15	3	15	y	0.04	1	22	1	22	n	0.00	0	16	0	16	n	0.00	0	10	0	10	n	0.04	1	26	1	26	n	0.00	0	19	0	19	n	0.00	0	24	0	24	n	ENSMUSG00000031948.15	Kars	chr8	protein_coding	lysyl-tRNA synthetase
novel_NIR_18589	chr8	112735018	112736854	-	112735018;112735171	112735114;112736854	ES	ENSMUST00000211990.2	novel	0.00	0	1.5	0	2;1	n	0.00	0	2.0	0	3;1	n	0.33	2	4.0	2	7;1	y	0.50	4	4.0	4	5;3	y	0.18	1	4.5	1	8;1	n	0.75	3	1.0	3	1;1	y	0.22	1	3.5	1	6;1	n	0.00	0	3.5	0	6;1	n	0.00	0	5.0	0	6;4	n	0.17	1	5.0	1	9;1	n	0.00	0	1.0	0	2;0	n	0.00	0	3.0	0	5;1	n	ENSMUSG00000031948.15	Kars	chr8	protein_coding	lysyl-tRNA synthetase
novel_NIR_18590	chr8	114860440	114861921	+	114860440	114874635	A3SS	ENSMUST00000066514.13	novel	0.24	12	39	12	39	y	0.15	5	28	5	28	y	0.00	0	18	0	18	n	0.18	9	42	9	42	y	0.19	5	21	5	21	y	0.00	0	3	0	3	n	0.13	5	33	5	33	n	0.67	2	1	2	1	y	0.14	10	61	10	61	n	0.24	22	68	22	68	y	0.17	15	75	15	75	y	0.27	12	32	12	32	y	ENSMUSG00000031767.14	Nudt7	chr8	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 7
novel_NIR_18591	chr8	114860440	114862072	+	114860440	114874635	A3SS	ENSMUST00000066514.13	novel	0.15	7	39	7	39	y	0.28	11	28	11	28	y	0.05	1	18	1	18	n	0.28	16	42	16	42	y	0.16	4	21	4	21	y	0.00	0	3	0	3	n	0.27	12	33	12	33	y	0.00	0	1	0	1	n	0.32	29	61	29	61	y	0.35	37	68	37	68	y	0.18	17	75	17	75	y	0.38	20	32	20	32	y	ENSMUSG00000031767.14	Nudt7	chr8	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 7
novel_NIR_18592	chr8	114860440	114863092	+	114860440	114874635	A3SS	ENSMUST00000066514.13	novel	0.00	0	39	0	39	n	0.00	0	28	0	28	n	0.00	0	18	0	18	n	0.00	0	42	0	42	n	0.00	0	21	0	21	n	0.00	0	3	0	3	n	0.15	6	33	6	33	y	0.00	0	1	0	1	n	0.00	0	61	0	61	n	0.00	0	68	0	68	n	0.00	0	75	0	75	n	0.00	0	32	0	32	n	ENSMUSG00000031767.14	Nudt7	chr8	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 7
novel_NIR_18593	chr8	114860440	114863189	+	114860440	114874635	A3SS	ENSMUST00000066514.13	novel	0.00	0	39	0	39	n	0.07	2	28	2	28	n	0.00	0	18	0	18	n	0.02	1	42	1	42	n	0.00	0	21	0	21	n	0.00	0	3	0	3	n	0.00	0	33	0	33	n	0.67	2	1	2	1	y	0.00	0	61	0	61	n	0.00	0	68	0	68	n	0.01	1	75	1	75	n	0.00	0	32	0	32	n	ENSMUSG00000031767.14	Nudt7	chr8	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 7
novel_NIR_18594	chr8	114874733;114875934	114875832;114878394	+	114874733	114878394	cassetteExon	ENSMUST00000147605.8	novel	0.41	55.0	80	3;107	80	y	0.52	53.5	49	2;105	49	y	0.26	22.5	64	0;45	64	n	0.55	80.5	65	1;160	65	n	0.38	35.0	58	0;70	58	n	0.19	3.5	15	0;7	15	n	0.37	45.0	76	5;85	76	y	0.33	5.0	10	1;9	10	n	0.40	90.5	135	0;181	135	n	0.39	107.0	166	0;214	166	n	0.43	99.0	133	4;194	133	y	0.42	80.0	110	0;160	110	n	ENSMUSG00000031767.14	Nudt7	chr8	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 7
novel_NIR_18595	chr8	114874733;114875934	114875879;114878394	+	114874733	114878394	cassetteExon	ENSMUST00000147605.8	novel	0.40	53.5	80	0;107	80	n	0.53	55.5	49	6;105	49	y	0.26	22.5	64	0;45	64	n	0.55	80.0	65	0;160	65	n	0.38	35.0	58	0;70	58	n	0.19	3.5	15	0;7	15	n	0.36	42.5	76	0;85	76	n	0.31	4.5	10	0;9	10	n	0.41	92.0	135	3;181	135	y	0.39	107.0	166	0;214	166	n	0.42	97.0	133	0;194	133	n	0.42	80.0	110	0;160	110	n	ENSMUSG00000031767.14	Nudt7	chr8	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 7
novel_NIR_18596	chr8	114875934	114878394	+	114874733	114878394	A5SS	ENSMUST00000147605.8	novel	0.57	107	80	107	80	n	0.68	105	49	105	49	n	0.41	45	64	45	64	y	0.71	160	65	160	65	n	0.55	70	58	70	58	y	0.32	7	15	7	15	y	0.53	85	76	85	76	n	0.47	9	10	9	10	n	0.57	181	135	181	135	n	0.56	214	166	214	166	y	0.59	194	133	194	133	n	0.59	160	110	160	110	y	ENSMUSG00000031767.14	Nudt7	chr8	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 7
novel_NIR_18597	chr8	115215744	115220602	+	115215744	115240312	A3SS	ENSMUST00000161753.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000004637.16	Wwox	chr8	protein_coding	WW domain-containing oxidoreductase
novel_NIR_18598	chr8	115215744	115220602	+	115215744	115406527	A3SS	ENSMUST00000004756.14	novel	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.08	1	11	1	11	n	0.21	3	11	3	11	y	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	ENSMUSG00000004637.16	Wwox	chr8	protein_coding	WW domain-containing oxidoreductase
novel_NIR_18599	chr8	115215744	115276107	+	115215744	115240312	3pMXE	ENSMUST00000161753.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000004637.16	Wwox	chr8	protein_coding	WW domain-containing oxidoreductase
novel_NIR_18600	chr8	115215744	115276107	+	115215744	115406527	A3SS	ENSMUST00000004756.14	novel	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.20	2	8	2	8	y	ENSMUSG00000004637.16	Wwox	chr8	protein_coding	WW domain-containing oxidoreductase
novel_NIR_18601	chr8	115215744	115314136	+	115215744	115240312	3pMXE	ENSMUST00000161753.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000004637.16	Wwox	chr8	protein_coding	WW domain-containing oxidoreductase
novel_NIR_18602	chr8	115215744	115314136	+	115215744	115406527	A3SS	ENSMUST00000004756.14	novel	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.15	2	11	2	11	y	0.50	1	1	1	1	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	ENSMUSG00000004637.16	Wwox	chr8	protein_coding	WW domain-containing oxidoreductase
novel_NIR_18603	chr8	115288434	115406527	+	115215744	115406527	A5SS	ENSMUST00000004756.14	novel	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.31	5	11	5	11	y	0.08	1	11	1	11	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.08	1	11	1	11	n	0.09	1	10	1	10	n	0.09	1	10	1	10	n	0.00	0	8	0	8	n	ENSMUSG00000004637.16	Wwox	chr8	protein_coding	WW domain-containing oxidoreductase
novel_NIR_18604	chr8	115288434	115406527	+	115335394	115406527	5pMXE	ENSMUST00000160205.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000004637.16	Wwox	chr8	protein_coding	WW domain-containing oxidoreductase
novel_NIR_18605	chr8	11568990	11569086	-	11568990	11576002	A5SS	ENSMUST00000049461.7	novel	0.23	5	17	5	17	y	0.13	4	27	4	27	n	0.04	3	65	3	65	n	0.00	0	34	0	34	n	0.10	3	27	3	27	n	0.10	4	38	4	38	n	0.07	2	27	2	27	n	0.11	2	17	2	17	n	0.29	7	17	7	17	y	0.00	0	42	0	42	n	0.00	0	29	0	29	n	0.05	3	54	3	54	n	ENSMUSG00000056228.11	Cars2	chr8	protein_coding	cysteinyl-tRNA synthetase 2 (mitochondrial)(putative)
novel_NIR_18606	chr8	11569178	11576002	-	11572208	11576002	3pMXE	ENSMUST00000211406.2	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.17	1	5	1	5	n	ENSMUSG00000056228.11	Cars2	chr8	protein_coding	cysteinyl-tRNA synthetase 2 (mitochondrial)(putative)
novel_NIR_18607	chr8	11676726	11678439	-	11669297	11678439	A3SS	ENSMUST00000169782.3	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.25	3	9	3	9	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000031508.15	Ankrd10	chr8	protein_coding	ankyrin repeat domain 10
novel_NIR_18608	chr8	11676726	11678439	-	11670373	11678439	A3SS	ENSMUST00000210530.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.33	3	6	3	6	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000031508.15	Ankrd10	chr8	protein_coding	ankyrin repeat domain 10
novel_NIR_18609	chr8	11676726	11678439	-	11673858	11678439	A3SS	ENSMUST00000211174.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000031508.15	Ankrd10	chr8	protein_coding	ankyrin repeat domain 10
novel_NIR_18610	chr8	117715942	117718307	-	117715942	117717965	5pMXE	ENSMUST00000162548.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034424.6	Gcsh	chr8	protein_coding	glycine cleavage system protein H (aminomethyl carrier)
novel_NIR_18611	chr8	118044540	118103814	+	118076114	118103814	5pMXE	ENSMUST00000095172.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000034390.17	Cmip	chr8	protein_coding	c-Maf inducing protein
novel_NIR_18612	chr8	11829339	11831155	+	11808517	11831155	A5SS	ENSMUST00000210104.2	novel	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.17	2	10	2	10	y	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.07	1	14	1	14	n	0.06	1	16	1	16	n	0.00	0	12	0	12	n	0.00	0	22	0	22	n	0.14	1	6	1	6	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	ENSMUSG00000031511.17	Arhgef7	chr8	protein_coding	Rho guanine nucleotide exchange factor (GEF7)
novel_NIR_18613	chr8	118397275	118408804	+	118408479	118408804	5pMXE	ENSMUST00000209648.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000110151.3	Gm38416	chr8	lncRNA	predicted gene, 38416
novel_NIR_18614	chr8	118399715	118408804	+	118408479	118408804	5pMXE	ENSMUST00000209648.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000110151.3	Gm38416	chr8	lncRNA	predicted gene, 38416
novel_NIR_18615	chr8	118427936	118461233	+	118447767	118461233	5pMXE	ENSMUST00000212998.2	novel	1.00	49	0	49	0	y	1.00	33	0	33	0	y	0.97	29	1	29	1	y	1.00	34	0	34	0	y	1.00	55	0	55	0	y	1.00	18	0	18	0	y	1.00	43	0	43	0	y	1.00	20	0	20	0	y	1.00	41	0	41	0	y	1.00	52	0	52	0	y	1.00	40	0	40	0	y	1.00	31	0	31	0	y	ENSMUSG00000031844.9	Hsd17b2	chr8	protein_coding	hydroxysteroid (17-beta) dehydrogenase 2
novel_NIR_18616	chr8	118429002	118430512	+	118429002	118434139	A3SS	ENSMUST00000212052.2	novel	0.33	2	4	2	4	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.25	1	3	1	3	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	ENSMUSG00000031844.9	Hsd17b2	chr8	protein_coding	hydroxysteroid (17-beta) dehydrogenase 2
novel_NIR_18617	chr8	118429002	118434308	+	118429002	118434139	A3SS	ENSMUST00000212052.2	novel	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.40	2	3	2	3	y	ENSMUSG00000031844.9	Hsd17b2	chr8	protein_coding	hydroxysteroid (17-beta) dehydrogenase 2
novel_NIR_18618	chr8	118429002	118434960	+	118429002;118434429	118434139;118434960	ES	ENSMUST00000212052.2	novel	0.00	0	4.5	0	4;5	n	0.43	3	4.0	3	5;3	y	0.67	4	2.0	4	1;3	y	0.80	4	1.0	4	0;2	y	0.33	1	2.0	1	0;4	n	0.00	0	0.5	0	0;1	n	0.44	2	2.5	2	3;2	y	0.00	0	2.0	0	4;0	n	0.43	5	6.5	5	3;10	y	0.53	4	3.5	4	3;4	y	0.71	6	2.5	6	3;2	y	0.80	8	2.0	8	3;1	y	ENSMUSG00000031844.9	Hsd17b2	chr8	protein_coding	hydroxysteroid (17-beta) dehydrogenase 2
novel_NIR_18619	chr8	118429002;118430609	118430512;118434960	+	118429002;118434429	118434139;118434960	MXE	ENSMUST00000212052.2	novel	0.31	2.0	4.5	2;2	4;5	y	0.00	0.0	4.0	0;0	5;3	n	0.00	0.0	2.0	0;0	1;3	n	0.00	0.0	1.0	0;0	0;2	n	0.33	1.0	2.0	2;0	0;4	n	0.00	0.0	0.5	0;0	0;1	n	0.17	0.5	2.5	0;1	3;2	n	0.00	0.0	2.0	0;0	4;0	n	0.07	0.5	6.5	1;0	3;10	n	0.22	1.0	3.5	1;1	3;4	n	0.29	1.0	2.5	1;1	3;2	n	0.00	0.0	2.0	0;0	3;1	n	ENSMUSG00000031844.9	Hsd17b2	chr8	protein_coding	hydroxysteroid (17-beta) dehydrogenase 2
novel_NIR_18620	chr8	118455181	118461233	+	118447767	118461233	A5SS	ENSMUST00000212998.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	2	0	2	0	y	ENSMUSG00000031844.9	Hsd17b2	chr8	protein_coding	hydroxysteroid (17-beta) dehydrogenase 2
novel_NIR_18621	chr8	118457291	118461233	+	118447767	118461233	A5SS	ENSMUST00000212998.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031844.9	Hsd17b2	chr8	protein_coding	hydroxysteroid (17-beta) dehydrogenase 2
novel_NIR_18622	chr8	118521410	118525779	-	118521410	118525783	A5SS	ENSMUST00000034303.3	novel	0.08	1	12	1	12	n	0.00	0	29	0	29	n	0.00	0	25	0	25	n	0.00	0	9	0	9	n	0.22	5	18	5	18	y	0.00	0	15	0	15	n	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.23	3	10	3	10	y	0.00	0	23	0	23	n	0.00	0	14	0	14	n	0.00	0	15	0	15	n	ENSMUSG00000031843.3	Mphosph6	chr8	protein_coding	M phase phosphoprotein 6
novel_NIR_18623	chr8	118525895	118528583	-	118525895	118528591	A5SS	ENSMUST00000034303.3	novel	0.06	1	17	1	17	n	0.12	2	15	2	15	n	0.00	0	24	0	24	n	0.00	0	12	0	12	n	0.12	3	21	3	21	n	0.00	0	12	0	12	n	0.11	2	16	2	16	n	0.00	0	14	0	14	n	0.27	3	8	3	8	y	0.00	0	20	0	20	n	0.06	1	15	1	15	n	0.00	0	16	0	16	n	ENSMUSG00000031843.3	Mphosph6	chr8	protein_coding	M phase phosphoprotein 6
novel_NIR_18624	chr8	120163458	120163932	+	120161245	120163932	A5SS	ENSMUST00000131448.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000074063.11	Osgin1	chr8	protein_coding	oxidative stress induced growth inhibitor 1
novel_NIR_18625	chr8	120170022	120171159	+	120170022	120171698	A3SS	ENSMUST00000098365.4	novel	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.06	2	30	2	30	n	0.00	0	3	0	3	n	0.00	0	17	0	17	n	0.00	0	6	0	6	n	0.00	0	21	0	21	n	0.27	3	8	3	8	y	0.00	0	21	0	21	n	0.00	0	32	0	32	n	ENSMUSG00000074063.11	Osgin1	chr8	protein_coding	oxidative stress induced growth inhibitor 1
novel_NIR_18626	chr8	120170022	120171670	+	120170022	120171698	A3SS	ENSMUST00000098365.4	novel	0.00	0	4	0	4	n	0.10	1	9	1	9	n	0.15	2	11	2	11	y	0.00	0	14	0	14	n	0.12	4	30	4	30	n	0.00	0	3	0	3	n	0.15	3	17	3	17	y	0.00	0	6	0	6	n	0.16	4	21	4	21	y	0.00	0	8	0	8	n	0.00	0	21	0	21	n	0.00	0	32	0	32	n	ENSMUSG00000074063.11	Osgin1	chr8	protein_coding	oxidative stress induced growth inhibitor 1
novel_NIR_18627	chr8	120242448	120244686	-	120242448	120242547	5pMXE	ENSMUST00000212736.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000031835.17	Mbtps1	chr8	protein_coding	membrane-bound transcription factor peptidase, site 1
novel_NIR_18628	chr8	120406196	120406900	+	120406196	120406894	A3SS	ENSMUST00000212901.2	novel	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	15	0	15	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.40	2	3	2	3	y	0.00	0	8	0	8	n	ENSMUSG00000023336.7	Wfdc1	chr8	protein_coding	WAP four-disulfide core domain 1
novel_NIR_18629	chr8	120597400	120601114	+	120597431	120601114	A5SS	ENSMUST00000034287.10	novel	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.15	2	11	2	11	y	0.00	0	23	0	23	n	0.00	0	8	0	8	n	0.08	1	12	1	12	n	0.00	0	12	0	12	n	0.33	1	2	1	2	n	0.19	4	17	4	17	y	0.00	0	14	0	14	n	0.00	0	16	0	16	n	ENSMUSG00000031828.10	Klhl36	chr8	protein_coding	kelch-like 36
novel_NIR_18630	chr8	120672272	120673814	+	120637678	120673814	A5SS	ENSMUST00000108982.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031826.21	Usp10	chr8	protein_coding	ubiquitin specific peptidase 10
novel_NIR_18631	chr8	120672272	120673814	+	120670985	120673814	A5SS	ENSMUST00000135210.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031826.21	Usp10	chr8	protein_coding	ubiquitin specific peptidase 10
novel_NIR_18632	chr8	121215890	121232759	+	121215890	121280323	A3SS	ENSMUST00000034279.16	novel	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000031822.21	Gse1	chr8	protein_coding	genetic suppressor element 1, coiled-coil protein
novel_NIR_18633	chr8	121264301	121289365	+	121264301;121280541	121280323;121289365	ES	ENSMUST00000118136.2	novel	0.00	0	3.5	0	2;5	n	0.00	0	2.5	0	0;5	n	0.00	0	17.0	0	9;25	n	0.00	0	10.0	0	7;13	n	0.15	3	17.0	3	8;26	y	0.00	0	7.0	0	4;10	n	0.00	0	7.0	0	4;10	n	0.00	0	7.0	0	6;8	n	0.00	0	8.5	0	3;14	n	0.00	0	12.5	0	3;22	n	0.00	0	4.0	0	0;8	n	0.00	0	4.5	0	0;9	n	ENSMUSG00000031822.21	Gse1	chr8	protein_coding	genetic suppressor element 1, coiled-coil protein
novel_NIR_18634	chr8	121316625	121318527	+	121316793	121318527	A5SS	ENSMUST00000181414.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.60	3	2	3	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000097773.2	Gm10614	chr8	lncRNA	predicted gene 10614
novel_NIR_18635	chr8	121395426	121396048	+	121395090	121396048	A5SS	ENSMUST00000181795.2	novel	0.60	3	2	3	2	y	0.67	4	2	4	2	y	1.00	4	0	4	0	y	0.00	0	2	0	2	n	0.50	4	4	4	4	y	1.00	4	0	4	0	y	0.33	2	4	2	4	y	0.50	3	3	3	3	y	0.00	0	3	0	3	n	0.09	1	10	1	10	n	0.00	0	6	0	6	n	0.67	4	2	4	2	y	ENSMUSG00000031818.13	Cox4i1	chr8	protein_coding	cytochrome c oxidase subunit 4I1
novel_NIR_18636	chr8	121395595	121396048	+	121395090	121396048	A5SS	ENSMUST00000181795.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.33	2	4	2	4	y	-	-	-	-	-	-	0.43	3	4	3	4	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	ENSMUSG00000031818.13	Cox4i1	chr8	protein_coding	cytochrome c oxidase subunit 4I1
novel_NIR_18637	chr8	121395849	121396048	+	121395090	121396048	A5SS	ENSMUST00000181795.2	novel	0.33	1	2	1	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.17	2	10	2	10	y	0.00	0	6	0	6	n	0.00	0	2	0	2	n	ENSMUSG00000031818.13	Cox4i1	chr8	protein_coding	cytochrome c oxidase subunit 4I1
novel_NIR_18638	chr8	121791737	121792346	-	121791737	121792333	A5SS	ENSMUST00000181530.8	novel	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.25	2	6	2	6	y	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	ENSMUSG00000097336.9	Fendrr	chr8	lncRNA	Foxf1 adjacent non-coding developmental regulatory RNA
novel_NIR_18639	chr8	121820311	121825447	-	121821985	121825447	3pMXE	ENSMUST00000133058.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000031816.16	Mthfsd	chr8	protein_coding	methenyltetrahydrofolate synthetase domain containing
novel_NIR_18640	chr8	121828275	121828542	-	121828275	121831131	A5SS	ENSMUST00000138908.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000031816.16	Mthfsd	chr8	protein_coding	methenyltetrahydrofolate synthetase domain containing
novel_NIR_18641	chr8	122282098	122282957	-	122282098	122282859	A5SS	ENSMUST00000180979.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000052934.15	Fbxo31	chr8	protein_coding	F-box protein 31
novel_NIR_18642	chr8	122282098	122282987	-	122282098	122282859	A5SS	ENSMUST00000180979.2	novel	0.67	2	1	2	1	y	0.50	1	1	1	1	n	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	3	3	3	3	y	0.33	1	2	1	2	n	0.60	3	2	3	2	y	0.00	0	2	0	2	n	0.25	1	3	1	3	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000052934.15	Fbxo31	chr8	protein_coding	F-box protein 31
novel_NIR_18643	chr8	122287201	122289499	-	122287201	122291377	A5SS	ENSMUST00000212985.2	novel	0.00	0	25	0	25	n	0.00	0	30	0	30	n	0.15	6	33	6	33	y	0.00	0	23	0	23	n	0.00	0	47	0	47	n	0.07	3	37	3	37	n	0.01	1	129	1	129	n	0.00	0	35	0	35	n	0.00	0	10	0	10	n	0.11	2	17	2	17	n	0.00	0	19	0	19	n	0.00	0	16	0	16	n	ENSMUSG00000052934.15	Fbxo31	chr8	protein_coding	F-box protein 31
novel_NIR_18644	chr8	122319055	122320229	+	122317662	122320229	A5SS	ENSMUST00000181521.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000031812.17	Map1lc3b	chr8	protein_coding	microtubule-associated protein 1 light chain 3 beta
novel_NIR_18645	chr8	122329060	122330547	-	122328988	122330547	A3SS	ENSMUST00000154725.2	novel	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.00	0	16	0	16	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	ENSMUSG00000061410.7	Zcchc14	chr8	protein_coding	zinc finger, CCHC domain containing 14
novel_NIR_18646	chr8	122332814	122332926	-	122332229	122332926	A3SS	ENSMUST00000046386.5	novel	0.11	1	8	1	8	n	0.38	3	5	3	5	y	0.00	0	10	0	10	n	0.12	2	14	2	14	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.29	6	15	6	15	y	0.00	0	5	0	5	n	0.17	2	10	2	10	y	ENSMUSG00000061410.7	Zcchc14	chr8	protein_coding	zinc finger, CCHC domain containing 14
novel_NIR_18647	chr8	122546959	122548042	-	122546959	122548019	A5SS	ENSMUST00000045884.17	novel	0.00	0	25	0	25	n	0.05	2	35	2	35	n	0.12	6	43	6	43	n	0.07	3	39	3	39	n	0.00	0	35	0	35	n	0.00	0	19	0	19	n	0.03	1	30	1	30	n	0.10	3	28	3	28	n	0.16	5	27	5	27	y	0.03	1	30	1	30	n	0.00	0	41	0	41	n	0.02	1	41	1	41	n	ENSMUSG00000040263.17	Klhdc4	chr8	protein_coding	kelch domain containing 4
novel_NIR_18648	chr8	122546959	122548042	-	122546959	122548521	A5SS	ENSMUST00000174665.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	6	0	6	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	5	0	5	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000040263.17	Klhdc4	chr8	protein_coding	kelch domain containing 4
novel_NIR_18649	chr8	122546959	122548042	-	122546959	122556121	A5SS	ENSMUST00000174192.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	6	0	6	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	5	0	5	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000040263.17	Klhdc4	chr8	protein_coding	kelch domain containing 4
novel_NIR_18650	chr8	122564103	122564735	+	122564103	122564674	A3SS	ENSMUST00000212899.2	novel	0.33	2	4	2	4	y	1.00	15	0	15	0	y	0.50	1	1	1	1	n	0.38	3	5	3	5	y	1.00	2	0	2	0	y	0.75	3	1	3	1	y	0.62	5	3	5	3	y	-	-	-	-	-	-	0.67	6	3	6	3	y	0.43	3	4	3	4	y	1.00	3	0	3	0	y	1.00	7	0	7	0	y	ENSMUSG00000110631.2	Gm42047	chr8	lncRNA	predicted gene, 42047
novel_NIR_18651	chr8	122564103	122564738	+	122564103	122564674	A3SS	ENSMUST00000212899.2	novel	0.80	16	4	16	4	y	1.00	32	0	32	0	y	0.83	5	1	5	1	y	0.78	18	5	18	5	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.62	5	3	5	3	y	1.00	5	0	5	0	y	0.85	17	3	17	3	y	0.86	25	4	25	4	y	1.00	6	0	6	0	y	1.00	20	0	20	0	y	ENSMUSG00000110631.2	Gm42047	chr8	lncRNA	predicted gene, 42047
novel_NIR_18652	chr8	122676659	122701166	+	122676586	122701166	A5SS	ENSMUST00000172628.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	7	0	7	0	y	0.67	2	1	2	1	y	1.00	2	0	2	0	y	ENSMUSG00000025316.17	Banp	chr8	protein_coding	BTG3 associated nuclear protein
novel_NIR_18653	chr8	122676659	122701166	+	122677387	122701166	5pMXE	ENSMUST00000093078.13	novel	0.00	0	16	0	16	n	0.00	0	14	0	14	n	0.33	2	4	2	4	y	0.12	2	14	2	14	n	0.15	2	11	2	11	y	0.00	0	5	0	5	n	0.38	3	5	3	5	y	0.30	3	7	3	7	y	0.14	1	6	1	6	n	0.54	7	6	7	6	y	0.40	2	3	2	3	y	0.14	2	12	2	12	n	ENSMUSG00000025316.17	Banp	chr8	protein_coding	BTG3 associated nuclear protein
novel_NIR_18654	chr8	122677387	122718267	+	122705493	122718267	A5SS&ES	ENSMUST00000172628.8	novel	0.00	0	10	0	10	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	19	0	19	n	0.00	0	14	0	14	n	0.00	0	2	0	2	n	0.20	2	8	2	8	y	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.10	1	9	1	9	n	0.00	0	4	0	4	n	ENSMUSG00000025316.17	Banp	chr8	protein_coding	BTG3 associated nuclear protein
novel_NIR_18655	chr8	122730829	122732291	+	122727870	122732291	A5SS	ENSMUST00000093078.13	novel	0.25	9	27	9	27	y	0.26	5	14	5	14	y	0.30	3	7	3	7	y	0.27	4	11	4	11	y	0.20	9	35	9	35	y	0.00	0	16	0	16	n	0.09	2	21	2	21	n	0.05	1	18	1	18	n	0.26	6	17	6	17	y	0.28	5	13	5	13	y	0.46	11	13	11	13	y	0.40	12	18	12	18	y	ENSMUSG00000025316.17	Banp	chr8	protein_coding	BTG3 associated nuclear protein
novel_NIR_18656	chr8	123034142	123034231	+	123034146	123034231	A5SS	ENSMUST00000176883.2	novel	0.22	2	7	2	7	y	0.00	0	5	0	5	n	0.20	3	12	3	12	y	0.00	0	7	0	7	n	0.16	4	21	4	21	y	0.15	2	11	2	11	y	0.00	0	17	0	17	n	0.00	0	19	0	19	n	0.00	0	6	0	6	n	0.19	5	21	5	21	y	0.43	3	4	3	4	y	0.00	0	10	0	10	n	ENSMUSG00000049577.16	Zfpm1	chr8	protein_coding	zinc finger protein, multitype 1
novel_NIR_18657	chr8	123061766	123061840	+	123061766	123062252	A3SS	ENSMUST00000212315.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000049577.16	Zfpm1	chr8	protein_coding	zinc finger protein, multitype 1
novel_NIR_18658	chr8	123061998	123062175	+	123061998	123062252	A3SS	ENSMUST00000176690.2	novel	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	-	-	-	-	-	-	-	-	-	-	-	-	0.57	8	6	8	6	y	0.25	1	3	1	3	n	-	-	-	-	-	-	ENSMUSG00000049577.16	Zfpm1	chr8	protein_coding	zinc finger protein, multitype 1
novel_NIR_18659	chr8	123104489	123110139	+	123103539	123110139	A5SS	ENSMUST00000017622.12	novel	0.13	4	26	4	26	n	0.00	0	23	0	23	n	0.12	5	38	5	38	n	0.22	8	29	8	29	y	0.21	9	33	9	33	y	0.00	0	21	0	21	n	0.24	12	38	12	38	y	0.22	8	29	8	29	y	0.18	7	31	7	31	y	0.22	10	35	10	35	y	0.36	10	18	10	18	y	0.10	5	44	5	44	n	ENSMUSG00000017478.16	Zc3h18	chr8	protein_coding	zinc finger CCCH-type containing 18
novel_NIR_18660	chr8	123104489	123110139	+	123105476	123110139	A5SS&ES	ENSMUST00000176699.2	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	8	0	8	0	y	1.00	9	0	9	0	y	-	-	-	-	-	-	1.00	12	0	12	0	y	1.00	8	0	8	0	y	1.00	7	0	7	0	y	1.00	10	0	10	0	y	1.00	10	0	10	0	y	1.00	5	0	5	0	y	ENSMUSG00000017478.16	Zc3h18	chr8	protein_coding	zinc finger CCCH-type containing 18
novel_NIR_18661	chr8	123166491	123166726	-	123166491	123166695	A5SS	ENSMUST00000211883.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.80	4	1	4	1	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000006517.6	Mvd	chr8	protein_coding	mevalonate (diphospho) decarboxylase
novel_NIR_18662	chr8	123203327	123203645	+	123203034	123203645	A5SS	ENSMUST00000134127.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000049482.17	Ctu2	chr8	protein_coding	cytosolic thiouridylase subunit 2
novel_NIR_18663	chr8	123305936	123307811	-	123305936	123306034	A5SS&ES	ENSMUST00000211906.2	novel	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000015027.12	Galns	chr8	protein_coding	galactosamine (N-acetyl)-6-sulfate sulfatase
novel_NIR_18664	chr8	123361988	123362493	-	123361886	123362493	A3SS	ENSMUST00000127984.9	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	4	0	4	n	ENSMUSG00000006362.17	Cbfa2t3	chr8	protein_coding	CBFA2/RUNX1 translocation partner 3
novel_NIR_18665	chr8	123502439	123506685	+	123502329	123506685	A5SS	ENSMUST00000212903.2	novel	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.20	1	4	1	4	n	0.00	0	16	0	16	n	0.08	1	12	1	12	n	0.31	4	9	4	9	y	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.09	1	10	1	10	n	ENSMUSG00000015016.9	Acsf3	chr8	protein_coding	acyl-CoA synthetase family member 3
novel_NIR_18666	chr8	123502439	123506685	+	123502367	123506685	A5SS	ENSMUST00000212790.2	novel	0.00	0	7	0	7	n	0.12	1	7	1	7	n	0.08	1	11	1	11	n	0.00	0	18	0	18	n	0.09	1	10	1	10	n	0.31	4	9	4	9	y	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.12	1	7	1	7	n	ENSMUSG00000015016.9	Acsf3	chr8	protein_coding	acyl-CoA synthetase family member 3
novel_NIR_18667	chr8	123502439	123506685	+	123504962	123506685	A5SS&ES	ENSMUST00000212781.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000015016.9	Acsf3	chr8	protein_coding	acyl-CoA synthetase family member 3
novel_NIR_18668	chr8	123792448	123792966	+	123792448	123797119	A3SS	ENSMUST00000128803.8	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	ENSMUSG00000000738.19	Spg7	chr8	protein_coding	SPG7, paraplegin matrix AAA peptidase subunit
novel_NIR_18669	chr8	123793098	123793212	+	123789773	123793212	A5SS	ENSMUST00000125975.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000000738.19	Spg7	chr8	protein_coding	SPG7, paraplegin matrix AAA peptidase subunit
novel_NIR_18670	chr8	123872261	123873282	-	123872261	123875049	A5SS	ENSMUST00000122819.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	ENSMUSG00000000739.15	Sult5a1	chr8	protein_coding	sulfotransferase family 5A, member 1
novel_NIR_18671	chr8	123876172	123876881	-	123876172	123879891	A5SS	ENSMUST00000146007.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	ENSMUSG00000000739.15	Sult5a1	chr8	protein_coding	sulfotransferase family 5A, member 1
novel_NIR_18672	chr8	123876172	123876881	-	123876172	123884178	A5SS	ENSMUST00000000755.15	novel	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.00	0	66	0	66	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	20	0	20	n	0.50	2	2	2	2	y	0.00	0	22	0	22	n	0.00	0	28	0	28	n	0.00	0	30	0	30	n	0.00	0	7	0	7	n	ENSMUSG00000000739.15	Sult5a1	chr8	protein_coding	sulfotransferase family 5A, member 1
novel_NIR_18673	chr8	123939976	123944635	+	123939976	123941053	3pMXE	ENSMUST00000212892.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000048478.8	Spata33	chr8	protein_coding	spermatogenesis associated 33
novel_NIR_18674	chr8	123939976	123944635	+	123939976	123948557	A3SS	ENSMUST00000060133.8	novel	0.00	0	2	0	2	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000048478.8	Spata33	chr8	protein_coding	spermatogenesis associated 33
novel_NIR_18675	chr8	123951794	123953086	+	123951669	123953086	A5SS	ENSMUST00000212021.2	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.33	3	6	3	6	y	ENSMUSG00000033862.8	Cdk10	chr8	protein_coding	cyclin-dependent kinase 10
novel_NIR_18676	chr8	123951995	123953086	+	123951669	123953086	A5SS	ENSMUST00000212021.2	novel	0.00	0	2	0	2	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.11	1	8	1	8	n	0.14	1	6	1	6	n	0.83	5	1	5	1	y	0.14	1	6	1	6	n	ENSMUSG00000033862.8	Cdk10	chr8	protein_coding	cyclin-dependent kinase 10
novel_NIR_18677	chr8	123955673	123955788	+	123955673	123955851	A3SS	ENSMUST00000212497.2	novel	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000033862.8	Cdk10	chr8	protein_coding	cyclin-dependent kinase 10
novel_NIR_18678	chr8	123962560	123962889	-	123962588	123962889	A3SS	ENSMUST00000098327.2	novel	0.33	7	14	7	14	y	0.33	3	6	3	6	y	0.50	2	2	2	2	y	0.38	8	13	8	13	y	0.00	0	26	0	26	n	0.50	1	1	1	1	n	0.29	2	5	2	5	y	0.60	3	2	3	2	y	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	ENSMUSG00000033594.12	Spata2l	chr8	protein_coding	spermatogenesis associated 2-like
novel_NIR_18679	chr8	123962560	123962889	-	123962662	123962889	A3SS	ENSMUST00000212818.2	novel	0.78	7	2	7	2	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	0.89	8	1	8	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.40	2	3	2	3	y	1.00	3	0	3	0	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000033594.12	Spata2l	chr8	protein_coding	spermatogenesis associated 2-like
novel_NIR_18680	chr8	123972808	123973464	-	123973358	123973464	3pMXE	ENSMUST00000127978.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	2	2	2	2	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000001062.19	Vps9d1	chr8	protein_coding	VPS9 domain containing 1
novel_NIR_18681	chr8	123977755	123979344	-	123977758	123979344	A3SS	ENSMUST00000149490.8	novel	0.00	0	24	0	24	n	0.27	8	22	8	22	y	0.18	3	14	3	14	y	0.15	4	23	4	23	y	0.33	14	29	14	29	y	0.50	3	3	3	3	y	0.43	15	20	15	20	y	0.19	3	13	3	13	y	0.41	7	10	7	10	y	0.19	7	29	7	29	y	0.16	3	16	3	16	y	0.11	2	16	2	16	n	ENSMUSG00000001062.19	Vps9d1	chr8	protein_coding	VPS9 domain containing 1
novel_NIR_18682	chr8	123985096	123986172	+	123985096	123986170	A3SS	ENSMUST00000156896.8	novel	0.00	0	12	0	12	n	0.23	5	17	5	17	y	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	20	0	20	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.00	0	17	0	17	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	ENSMUSG00000001065.16	Zfp276	chr8	protein_coding	zinc finger protein (C2H2 type) 276
novel_NIR_18683	chr8	123985128	123991555	+	123982749	123991555	A5SS	ENSMUST00000154450.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000001065.16	Zfp276	chr8	protein_coding	zinc finger protein (C2H2 type) 276
novel_NIR_18684	chr8	124127928	124129886	+	124127436	124129886	A5SS	ENSMUST00000108840.4	novel	0.35	13	24	13	24	y	0.16	7	37	7	37	y	0.38	20	32	20	32	y	0.20	10	40	10	40	y	0.34	20	39	20	39	y	0.19	5	21	5	21	y	0.34	21	40	21	40	y	0.35	11	20	11	20	y	0.23	7	23	7	23	y	0.36	19	34	19	34	y	0.29	12	29	12	29	y	0.33	14	29	14	29	y	ENSMUSG00000001472.18	Tcf25	chr8	protein_coding	transcription factor 25 (basic helix-loop-helix)
novel_NIR_18685	chr8	124127928	124129889	+	124127436	124129889	A5SS	ENSMUST00000212571.2	novel	0.00	0	23	0	23	n	0.00	0	36	0	36	n	0.25	10	30	10	30	y	0.00	0	30	0	30	n	0.00	0	35	0	35	n	0.23	7	23	7	23	y	0.00	0	37	0	37	n	0.00	0	21	0	21	n	0.00	0	31	0	31	n	0.22	9	32	9	32	y	0.00	0	23	0	23	n	0.00	0	32	0	32	n	ENSMUSG00000001472.18	Tcf25	chr8	protein_coding	transcription factor 25 (basic helix-loop-helix)
novel_NIR_18686	chr8	124129599	124129886	+	124127436	124129886	A5SS	ENSMUST00000108840.4	novel	0.00	0	24	0	24	n	0.00	0	37	0	37	n	0.00	0	32	0	32	n	0.00	0	40	0	40	n	0.00	0	39	0	39	n	0.16	4	21	4	21	y	0.02	1	40	1	40	n	0.00	0	20	0	20	n	0.00	0	23	0	23	n	0.06	2	34	2	34	n	0.12	4	29	4	29	n	0.17	6	29	6	29	n	ENSMUSG00000001472.18	Tcf25	chr8	protein_coding	transcription factor 25 (basic helix-loop-helix)
novel_NIR_18687	chr8	124169790	124173587	+	124169790	124172837	A3SS&ES	ENSMUST00000001522.10	novel	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	21	0	21	n	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.29	2	5	2	5	y	0.17	1	5	1	5	n	ENSMUSG00000001482.16	Def8	chr8	protein_coding	differentially expressed in FDCP 8
novel_NIR_18688	chr8	124169790	124173587	+	124169790	124172862	A3SS&ES	ENSMUST00000132063.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.50	1	1	1	1	n	ENSMUSG00000001482.16	Def8	chr8	protein_coding	differentially expressed in FDCP 8
novel_NIR_18689	chr8	124169790	124173587	+	124169790	124174056	A3SS	ENSMUST00000124741.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	1.00	1	0	1	0	n	ENSMUSG00000001482.16	Def8	chr8	protein_coding	differentially expressed in FDCP 8
novel_NIR_18690	chr8	124169790	124174573	+	124169790	124172862	A3SS&ES	ENSMUST00000132063.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	2	4	2	4	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000001482.16	Def8	chr8	protein_coding	differentially expressed in FDCP 8
novel_NIR_18691	chr8	124169790	124174573	+	124169790	124174056	A3SS&ES	ENSMUST00000124741.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000001482.16	Def8	chr8	protein_coding	differentially expressed in FDCP 8
novel_NIR_18692	chr8	124170184	124172837	+	124169790	124172837	A5SS	ENSMUST00000001522.10	novel	0.11	1	8	1	8	n	0.11	1	8	1	8	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	21	0	21	n	0.25	3	9	3	9	y	0.06	1	17	1	17	n	0.10	1	9	1	9	n	0.00	0	9	0	9	n	0.25	3	9	3	9	y	0.17	1	5	1	5	n	0.00	0	5	0	5	n	ENSMUSG00000001482.16	Def8	chr8	protein_coding	differentially expressed in FDCP 8
novel_NIR_18693	chr8	124170184	124172837	+	124170184	124174527	A3SS	ENSMUST00000108830.2	novel	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.25	3	9	3	9	y	0.11	1	8	1	8	n	0.07	1	14	1	14	n	-	-	-	-	-	-	0.60	3	2	3	2	y	0.20	1	4	1	4	n	0.00	0	4	0	4	n	ENSMUSG00000001482.16	Def8	chr8	protein_coding	differentially expressed in FDCP 8
novel_NIR_18694	chr8	124172923	124174573	+	124172923	124174056	A3SS&ES	ENSMUST00000108832.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	5	0	5	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000001482.16	Def8	chr8	protein_coding	differentially expressed in FDCP 8
novel_NIR_18695	chr8	124255203	124255299	+	124255203	124257566	A3SS	ENSMUST00000093043.7	novel	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.15	2	11	2	11	y	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.11	1	8	1	8	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.22	2	7	2	7	n	0.00	0	4	0	4	n	ENSMUSG00000040220.11	Gas8	chr8	protein_coding	growth arrest specific 8
novel_NIR_18696	chr8	124474128	124474604	-	124474107	124474604	A3SS	ENSMUST00000181805.3	novel	0.00	0	16	0	16	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.08	1	11	1	11	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.07	1	13	1	13	n	0.18	4	18	4	18	y	0.29	4	10	4	10	y	0.04	1	23	1	23	n	ENSMUSG00000097203.3	4732419C18Rik	chr8	lncRNA	RIKEN cDNA 4732419C18 gene
novel_NIR_18697	chr8	124474732	124475679	-	124474732	124480797	A5SS	ENSMUST00000181805.3	novel	0.20	1	4	1	4	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.25	2	6	2	6	n	0.27	3	8	3	8	n	0.33	2	4	2	4	n	0.43	3	4	3	4	n	0.60	3	2	3	2	y	0.42	5	7	5	7	n	0.12	1	7	1	7	n	0.25	3	9	3	9	n	0.11	2	17	2	17	n	ENSMUSG00000097203.3	4732419C18Rik	chr8	lncRNA	RIKEN cDNA 4732419C18 gene
novel_NIR_18698	chr8	124474732;124475748	124475679;124480797	-	124474732	124480797	cassetteExon	ENSMUST00000181805.3	novel	0.27	1.5	4	1;2	4	n	0.26	2.5	7	0;5	7	n	0.00	0.0	3	0;0	3	n	0.37	3.5	6	2;5	6	y	0.24	2.5	8	3;2	8	y	0.43	3.0	4	2;4	4	y	0.47	3.5	4	3;4	4	y	0.43	1.5	2	3;0	2	n	0.48	6.5	7	5;8	7	y	0.36	4.0	7	1;7	7	n	0.31	4.0	9	3;5	9	y	0.17	3.5	17	2;5	17	y	ENSMUSG00000097203.3	4732419C18Rik	chr8	lncRNA	RIKEN cDNA 4732419C18 gene
novel_NIR_18699	chr8	124474732;124476037	124475679;124480797	-	124474732	124480797	cassetteExon	ENSMUST00000181805.3	novel	0.11	0.5	4	1;0	4	n	0.00	0.0	7	0;0	7	n	0.00	0.0	3	0;0	3	n	0.14	1.0	6	2;0	6	n	0.20	2.0	8	3;1	8	n	0.20	1.0	4	2;0	4	n	0.38	2.5	4	3;2	4	y	0.43	1.5	2	3;0	2	n	0.26	2.5	7	5;0	7	n	0.07	0.5	7	1;0	7	n	0.14	1.5	9	3;0	9	n	0.11	2.0	17	2;2	17	n	ENSMUSG00000097203.3	4732419C18Rik	chr8	lncRNA	RIKEN cDNA 4732419C18 gene
novel_NIR_18700	chr8	124474750	124480797	-	124474732	124480797	A3SS	ENSMUST00000181805.3	novel	0.82	18	4	18	4	y	0.56	9	7	9	7	y	0.75	9	3	9	3	y	0.57	8	6	8	6	y	0.11	1	8	1	8	n	0.64	7	4	7	4	y	0.78	14	4	14	4	y	0.71	5	2	5	2	y	0.72	18	7	18	7	y	0.81	29	7	29	7	y	0.69	20	9	20	9	y	0.59	24	17	24	17	y	ENSMUSG00000097203.3	4732419C18Rik	chr8	lncRNA	RIKEN cDNA 4732419C18 gene
novel_NIR_18701	chr8	124474767	124480797	-	124474732	124480797	A3SS	ENSMUST00000181805.3	novel	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.50	3	3	3	3	y	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.12	1	7	1	7	n	0.12	1	7	1	7	n	0.10	1	9	1	9	n	0.23	5	17	5	17	y	ENSMUSG00000097203.3	4732419C18Rik	chr8	lncRNA	RIKEN cDNA 4732419C18 gene
novel_NIR_18702	chr8	124475748	124480797	-	124474732	124480797	A3SS	ENSMUST00000181805.3	novel	0.33	2	4	2	4	n	0.42	5	7	5	7	y	0.00	0	3	0	3	n	0.45	5	6	5	6	n	0.20	2	8	2	8	n	0.50	4	4	4	4	n	0.50	4	4	4	4	n	0.00	0	2	0	2	n	0.53	8	7	8	7	n	0.50	7	7	7	7	n	0.36	5	9	5	9	n	0.23	5	17	5	17	n	ENSMUSG00000097203.3	4732419C18Rik	chr8	lncRNA	RIKEN cDNA 4732419C18 gene
novel_NIR_18703	chr8	124479985	124480797	-	124474732	124480797	A3SS	ENSMUST00000181805.3	novel	0.20	1	4	1	4	n	0.00	0	7	0	7	n	0.40	2	3	2	3	y	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.20	1	4	1	4	n	0.50	4	4	4	4	y	0.00	0	2	0	2	n	0.12	1	7	1	7	n	0.42	5	7	5	7	y	0.10	1	9	1	9	n	0.00	0	17	0	17	n	ENSMUSG00000097203.3	4732419C18Rik	chr8	lncRNA	RIKEN cDNA 4732419C18 gene
novel_NIR_18704	chr8	124480011	124480797	-	124474732	124480797	A3SS	ENSMUST00000181805.3	novel	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	17	0	17	n	ENSMUSG00000097203.3	4732419C18Rik	chr8	lncRNA	RIKEN cDNA 4732419C18 gene
novel_NIR_18705	chr8	124481297	124492119	+	124481297	124494324	A3SS	ENSMUST00000212425.2	novel	0.85	11	2	11	2	y	0.38	3	5	3	5	y	0.00	0	1	0	1	n	0.33	1	2	1	2	n	1.00	8	0	8	0	y	0.50	1	1	1	1	n	0.60	6	4	6	4	y	0.00	0	3	0	3	n	0.67	6	3	6	3	y	0.93	13	1	13	1	y	0.78	14	4	14	4	y	0.42	8	11	8	11	y	ENSMUSG00000110684.2	Gm45866	chr8	lncRNA	predicted gene 45866
novel_NIR_18706	chr8	124643122;124643918	124643785;124644169	-	124643122	124644169	cassetteExon	ENSMUST00000044795.8	novel	0.00	0.0	15	0;0	15	n	0.00	0.0	12	0;0	12	n	0.00	0.0	12	0;0	12	n	0.00	0.0	16	0;0	16	n	0.00	0.0	16	0;0	16	n	0.00	0.0	10	0;0	10	n	0.00	0.0	17	0;0	17	n	0.22	2.0	7	2;2	7	y	0.00	0.0	11	0;0	11	n	0.00	0.0	20	0;0	20	n	0.00	0.0	16	0;0	16	n	0.00	0.0	16	0;0	16	n	ENSMUSG00000039509.9	Nup133	chr8	protein_coding	nucleoporin 133
novel_NIR_18707	chr8	124748265	124750199	+	124748546	124750199	A5SS	ENSMUST00000173168.8	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.22	2	7	2	7	y	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.57	4	3	4	3	y	ENSMUSG00000031976.15	Urb2	chr8	protein_coding	URB2 ribosome biogenesis 2 homolog (S. cerevisiae)
novel_NIR_18708	chr8	124751971	124761767	+	124751971;124757928	124754598;124761767	ES	ENSMUST00000173168.8	novel	0.00	0	11.5	0	2;21	n	0.20	1	4.0	1	1;7	n	0.00	0	18.0	0	10;26	n	0.00	0	10.5	0	6;15	n	0.00	0	7.5	0	8;7	n	0.00	0	8.0	0	5;11	n	0.27	2	5.5	2	0;11	y	0.00	0	6.0	0	3;9	n	0.00	0	6.0	0	0;12	n	0.00	0	12.0	0	10;14	n	0.00	0	3.5	0	2;5	n	0.00	0	8.0	0	2;14	n	ENSMUSG00000031976.15	Urb2	chr8	protein_coding	URB2 ribosome biogenesis 2 homolog (S. cerevisiae)
novel_NIR_18709	chr8	125366315	125378110	-	125366354	125378110	A3SS	ENSMUST00000034464.8	novel	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.06	2	31	2	31	n	0.05	1	21	1	21	n	0.03	1	29	1	29	n	0.00	0	13	0	13	n	0.00	0	27	0	27	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	27	0	27	n	0.20	4	16	4	16	y	0.00	0	19	0	19	n	ENSMUSG00000031983.8	2310022B05Rik	chr8	protein_coding	RIKEN cDNA 2310022B05 gene
novel_NIR_18710	chr8	125417098	125419333	-	125417098	125426395	A5SS	ENSMUST00000117624.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037300.20	Ttc13	chr8	protein_coding	tetratricopeptide repeat domain 13
novel_NIR_18711	chr8	125417098	125419333	-	125417098	125436642	A5SS	ENSMUST00000231984.2	novel	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.27	3	8	3	8	y	0.20	1	4	1	4	n	0.29	2	5	2	5	y	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000037300.20	Ttc13	chr8	protein_coding	tetratricopeptide repeat domain 13
novel_NIR_18712	chr8	125458680	125459257	+	125458680	125460546	A3SS	ENSMUST00000034463.4	novel	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.29	2	5	2	5	y	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	ENSMUSG00000031982.6	Arv1	chr8	protein_coding	ARV1 homolog, fatty acid homeostasis modulator
novel_NIR_18713	chr8	126239906	126246585	-	126219572	126246585	A3SS	ENSMUST00000212168.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	0.22	2	7	2	7	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000001995.10	Sipa1l2	chr8	protein_coding	signal-induced proliferation-associated 1 like 2
novel_NIR_18714	chr8	126246645	126297168	-	126246645	126296394	5pMXE	ENSMUST00000212168.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000001995.10	Sipa1l2	chr8	protein_coding	signal-induced proliferation-associated 1 like 2
novel_NIR_18715	chr8	126461268	126462807	+	126456801	126462807	A5SS	ENSMUST00000143504.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031851.15	Ntpcr	chr8	protein_coding	nucleoside-triphosphatase, cancer-related
novel_NIR_18716	chr8	126461268	126462807	+	126459970	126462807	A5SS	ENSMUST00000146055.8	novel	0.25	2	6	2	6	y	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031851.15	Ntpcr	chr8	protein_coding	nucleoside-triphosphatase, cancer-related
novel_NIR_18717	chr8	126461268	126462807	+	126462625	126462807	5pMXE	ENSMUST00000152189.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031851.15	Ntpcr	chr8	protein_coding	nucleoside-triphosphatase, cancer-related
novel_NIR_18718	chr8	126462964	126464062	+	126462969	126464062	A5SS	ENSMUST00000146055.8	novel	0.11	5	39	5	39	n	0.21	7	27	7	27	y	0.18	5	23	5	23	y	0.16	6	32	6	32	y	0.12	5	35	5	35	n	0.12	3	21	3	21	n	0.34	16	31	16	31	y	0.00	0	25	0	25	n	0.27	8	22	8	22	y	0.14	5	32	5	32	n	0.16	7	36	7	36	y	0.33	10	20	10	20	y	ENSMUSG00000031851.15	Ntpcr	chr8	protein_coding	nucleoside-triphosphatase, cancer-related
novel_NIR_18719	chr8	126462964	126471975	+	126462969	126471975	A5SS	ENSMUST00000143504.8	novel	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.80	4	1	4	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000031851.15	Ntpcr	chr8	protein_coding	nucleoside-triphosphatase, cancer-related
novel_NIR_18720	chr8	126464158	126466445	+	126464158	126464794	3pMXE	ENSMUST00000151172.8	novel	0.00	0	7	0	7	n	0.40	2	3	2	3	y	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.00	0	3	0	3	n	0.11	1	8	1	8	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	ENSMUSG00000031851.15	Ntpcr	chr8	protein_coding	nucleoside-triphosphatase, cancer-related
novel_NIR_18721	chr8	126464158	126466445	+	126464158	126471979	A3SS	ENSMUST00000138656.2	novel	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031851.15	Ntpcr	chr8	protein_coding	nucleoside-triphosphatase, cancer-related
novel_NIR_18722	chr8	126652962	126654326	+	126652962	126654270	A3SS	ENSMUST00000034316.6	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.22	2	7	2	7	y	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	ENSMUSG00000031853.6	Map3k21	chr8	protein_coding	mitogen-activated protein kinase kinase kinase 21
novel_NIR_18723	chr8	12687802;12688986	12688753;12689526	-	12687802	12689526	cassetteExon	ENSMUST00000164774.8	novel	0.14	1.5	9	1;2	9	n	0.09	0.5	5	1;0	5	n	0.00	0.0	11	0;0	11	n	0.07	0.5	7	0;1	7	n	0.43	7.5	10	3;12	10	y	0.00	0.0	1	0;0	1	n	0.30	3.0	7	0;6	7	n	0.00	0.0	5	0;0	5	n	0.23	3.0	10	0;6	10	n	0.22	2.5	9	2;3	9	y	0.00	0.0	11	0;0	11	n	0.13	2.0	13	1;3	13	n	ENSMUSG00000000759.15	Tubgcp3	chr8	protein_coding	tubulin, gamma complex associated protein 3
novel_NIR_18724	chr8	12688986	12689526	-	12687802	12689526	A3SS	ENSMUST00000164774.8	novel	0.18	2	9	2	9	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.12	1	7	1	7	n	0.55	12	10	12	10	n	0.00	0	1	0	1	n	0.46	6	7	6	7	y	0.00	0	5	0	5	n	0.38	6	10	6	10	y	0.25	3	9	3	9	n	0.00	0	11	0	11	n	0.19	3	13	3	13	n	ENSMUSG00000000759.15	Tubgcp3	chr8	protein_coding	tubulin, gamma complex associated protein 3
novel_NIR_18725	chr8	12708377	12708480	-	12708377	12711300	A5SS	ENSMUST00000164774.8	novel	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	18	0	18	n	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.00	0	15	0	15	n	0.30	3	7	3	7	y	0.33	5	10	5	10	y	0.00	0	3	0	3	n	0.00	0	9	0	9	n	ENSMUSG00000000759.15	Tubgcp3	chr8	protein_coding	tubulin, gamma complex associated protein 3
novel_NIR_18726	chr8	127155791	127160587	-	127155791;127157642	127157561;127160587	ES	ENSMUST00000170518.3	novel	0.00	0	3.5	0	5;2	n	0.25	1	3.0	1	4;2	n	0.32	3	6.5	3	7;6	y	0.00	0	8.5	0	11;6	n	0.00	0	9.0	0	7;11	n	0.12	1	7.5	1	7;8	n	0.00	0	3.5	0	4;3	n	0.00	0	10.5	0	11;10	n	0.00	0	4.0	0	4;4	n	0.00	0	4.5	0	4;5	n	0.00	0	4.0	0	3;5	n	0.14	1	6.0	1	6;6	n	ENSMUSG00000090290.3	Tarbp1	chr8	protein_coding	TAR RNA binding protein 1
novel_NIR_18727	chr8	127540584	127541231	-	127540018	127541231	A3SS	ENSMUST00000212406.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	ENSMUSG00000110697.2	Gm31718	chr8	lncRNA	predicted gene, 31718
novel_NIR_18728	chr8	127571738	127603734	-	127571738	127603150	5pMXE	ENSMUST00000212406.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000110697.2	Gm31718	chr8	lncRNA	predicted gene, 31718
novel_NIR_18729	chr8	127571738	127603734	-	127571738	127634785	A5SS	ENSMUST00000212639.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000110697.2	Gm31718	chr8	lncRNA	predicted gene, 31718
novel_NIR_18730	chr8	12764063	12764266	-	12764063	12768659	A5SS	ENSMUST00000151188.2	novel	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.17	1	5	1	5	n	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.60	3	2	3	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000074469.7	Gm15348	chr8	lncRNA	predicted gene 15348
novel_NIR_18731	chr8	12764063	12764690	-	12764063	12768659	A5SS	ENSMUST00000151188.2	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.17	1	5	1	5	n	0.40	2	3	2	3	y	0.75	3	1	3	1	y	0.50	2	2	2	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000074469.7	Gm15348	chr8	lncRNA	predicted gene 15348
novel_NIR_18732	chr8	12764063	12768826	-	12764063	12768659	A5SS	ENSMUST00000151188.2	novel	0.20	1	4	1	4	n	0.80	4	1	4	1	y	0.00	0	2	0	2	n	1.00	6	0	6	0	y	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.44	4	5	4	5	y	0.40	2	3	2	3	y	0.67	2	1	2	1	y	0.33	1	2	1	2	n	0.00	0	1	0	1	n	1.00	4	0	4	0	y	ENSMUSG00000074469.7	Gm15348	chr8	lncRNA	predicted gene 15348
novel_NIR_18733	chr8	12768930	12769156	-	12768930	12769027	5pMXE	ENSMUST00000151188.2	novel	1.00	1	0	1	0	n	0.91	10	1	10	1	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.83	10	2	10	2	y	1.00	3	0	3	0	y	1.00	6	0	6	0	y	0.82	9	2	9	2	y	0.83	10	2	10	2	y	1.00	5	0	5	0	y	1.00	1	0	1	0	n	0.80	4	1	4	1	y	ENSMUSG00000074469.7	Gm15348	chr8	lncRNA	predicted gene 15348
novel_NIR_18734	chr8	128166562	128186755	+	128174287	128186755	5pMXE	ENSMUST00000159511.2	novel	0.67	2	1	2	1	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.60	3	2	3	2	y	ENSMUSG00000025812.19	Pard3	chr8	protein_coding	par-3 family cell polarity regulator
novel_NIR_18735	chr8	12909479	12913762	+	12909479	12911640	A3SS&ES	ENSMUST00000132974.8	novel	0.00	0	10	0	10	n	0.06	1	16	1	16	n	0.00	0	24	0	24	n	0.00	0	11	0	11	n	0.05	1	21	1	21	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.33	2	4	2	4	y	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	ENSMUSG00000031441.16	Atp11a	chr8	protein_coding	ATPase, class VI, type 11A
novel_NIR_18736	chr8	12909479	12913762	+	12909479	12914920	A3SS	ENSMUST00000091237.12	novel	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031441.16	Atp11a	chr8	protein_coding	ATPase, class VI, type 11A
novel_NIR_18737	chr8	12913868	12914920	+	12909479	12914920	A5SS	ENSMUST00000091237.12	novel	1.00	6	0	6	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000031441.16	Atp11a	chr8	protein_coding	ATPase, class VI, type 11A
novel_NIR_18738	chr8	12913868	12914920	+	12911724	12914920	A5SS	ENSMUST00000132974.8	novel	0.40	6	9	6	9	n	0.00	0	12	0	12	n	0.00	0	20	0	20	n	0.00	0	12	0	12	n	0.04	1	22	1	22	n	0.00	0	7	0	7	n	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.50	3	3	3	3	y	0.00	0	13	0	13	n	ENSMUSG00000031441.16	Atp11a	chr8	protein_coding	ATPase, class VI, type 11A
novel_NIR_18739	chr8	12913868	12914920	+	12911724	12914920	A5SS	ENSMUST00000139545.2	novel	0.40	6	9	6	9	y	0.00	0	12	0	12	n	0.00	0	20	0	20	n	0.00	0	12	0	12	n	0.04	1	22	1	22	n	0.00	0	7	0	7	n	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.50	3	3	3	3	n	0.00	0	13	0	13	n	ENSMUSG00000031441.16	Atp11a	chr8	protein_coding	ATPase, class VI, type 11A
novel_NIR_18740	chr8	12913868	12914920	+	12913862	12914920	A5SS	ENSMUST00000033818.10	novel	0.46	6	7	6	7	y	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.00	0	12	0	12	n	0.03	1	31	1	31	n	0.00	0	7	0	7	n	0.00	0	21	0	21	n	0.00	0	23	0	23	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.50	3	3	3	3	y	0.00	0	18	0	18	n	ENSMUSG00000031441.16	Atp11a	chr8	protein_coding	ATPase, class VI, type 11A
novel_NIR_18741	chr8	129202775	129203609	+	129202775	129207366	A3SS	ENSMUST00000026917.10	novel	0.81	101	24	101	24	y	0.90	145	17	145	17	y	0.80	135	33	135	33	y	0.75	118	40	118	40	y	0.68	164	76	164	76	y	0.75	62	21	62	21	y	0.75	123	41	123	41	y	0.68	45	21	45	21	y	0.80	136	34	136	34	y	0.76	183	58	183	58	y	0.77	175	51	175	51	y	0.60	54	36	54	36	y	ENSMUSG00000025810.10	Nrp1	chr8	protein_coding	neuropilin 1
novel_NIR_18742	chr8	129206263	129207366	+	129202775	129207366	A5SS	ENSMUST00000026917.10	novel	0.04	1	24	1	24	n	0.06	1	17	1	17	n	0.00	0	33	0	33	n	0.11	5	40	5	40	n	0.07	6	76	6	76	n	0.05	1	21	1	21	n	0.09	4	41	4	41	n	0.00	0	21	0	21	n	0.06	2	34	2	34	n	0.05	3	58	3	58	n	0.06	3	51	3	51	n	0.25	12	36	12	36	y	ENSMUSG00000025810.10	Nrp1	chr8	protein_coding	neuropilin 1
novel_NIR_18743	chr8	129452667	129458747	+	129452667	129453464	A3SS&ES	ENSMUST00000149116.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	20	0	20	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	ENSMUSG00000025809.16	Itgb1	chr8	protein_coding	integrin beta 1 (fibronectin receptor beta)
novel_NIR_18744	chr8	129948431	129960616	-	129948431	129960386	5pMXE	ENSMUST00000190157.7	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.29	2	5	2	5	y	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.09	1	10	1	10	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	ENSMUSG00000071302.11	2610044O15Rik8	chr8	protein_coding	RIKEN cDNA 2610044O15 gene
novel_NIR_18745	chr8	129960713	129960790	-	129948431	129960790	A3SS	ENSMUST00000188757.7	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.29	2	5	2	5	y	0.25	1	3	1	3	n	0.50	1	1	1	1	n	0.75	3	1	3	1	n	ENSMUSG00000071302.11	2610044O15Rik8	chr8	protein_coding	RIKEN cDNA 2610044O15 gene
novel_NIR_18746	chr8	13113568;13113781	13113703;13114602	+	13113568	13114602	cassetteExon	ENSMUST00000211453.2	novel	0.00	0.0	13	0;0	13	n	0.30	3.0	7	1;5	7	n	0.25	3.0	9	3;3	9	y	0.22	5.5	19	6;5	19	y	0.34	10.0	19	9;11	19	y	0.43	1.5	2	0;3	2	n	0.15	2.0	11	0;4	11	n	0.09	1.0	10	1;1	10	n	0.20	3.0	12	4;2	12	y	0.10	2.0	18	1;3	18	n	0.24	3.5	11	4;3	11	y	0.24	5.0	16	3;7	16	y	ENSMUSG00000031445.6	Proz	chr8	protein_coding	protein Z, vitamin K-dependent plasma glycoprotein
novel_NIR_18747	chr8	13113781	13114602	+	13113568	13114602	A5SS	ENSMUST00000211453.2	novel	0.00	0	13	0	13	n	0.42	5	7	5	7	n	0.25	3	9	3	9	n	0.21	5	19	5	19	n	0.37	11	19	11	19	n	0.60	3	2	3	2	y	0.27	4	11	4	11	y	0.09	1	10	1	10	n	0.14	2	12	2	12	n	0.14	3	18	3	18	n	0.21	3	11	3	11	n	0.30	7	16	7	16	n	ENSMUSG00000031445.6	Proz	chr8	protein_coding	protein Z, vitamin K-dependent plasma glycoprotein
novel_NIR_18748	chr8	13122593	13123413	+	13122593	13123096	3pMXE	ENSMUST00000211363.2	novel	0.00	0	17	0	17	n	0.00	0	14	0	14	n	0.00	0	1	0	1	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.06	1	17	1	17	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.20	2	8	2	8	y	ENSMUSG00000031445.6	Proz	chr8	protein_coding	protein Z, vitamin K-dependent plasma glycoprotein
novel_NIR_18749	chr8	13229421	13229583	-	13222612	13229583	A3SS	ENSMUST00000209895.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038515.11	Grtp1	chr8	protein_coding	GH regulated TBC protein 1
novel_NIR_18750	chr8	13236979	13237287	-	13236979	13238510	A5SS	ENSMUST00000165605.4	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	7	0	7	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.75	3	1	3	1	n	ENSMUSG00000038515.11	Grtp1	chr8	protein_coding	GH regulated TBC protein 1
novel_NIR_18751	chr8	13239747	13239881	-	13239747	13250049	A5SS	ENSMUST00000209691.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038515.11	Grtp1	chr8	protein_coding	GH regulated TBC protein 1
novel_NIR_18752	chr8	13331125	13332534	-	13331125	13337804	A5SS	ENSMUST00000110840.8	novel	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.25	2	6	2	6	y	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.20	2	8	2	8	y	0.00	0	2	0	2	n	0.00	0	7	0	7	n	ENSMUSG00000038506.14	Dcun1d2	chr8	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae)
novel_NIR_18753	chr8	13353914	13358349	+	13353914	13358346	A3SS	ENSMUST00000045229.7	novel	0.00	0	9	0	9	n	0.56	5	4	5	4	y	0.60	9	6	9	6	y	0.59	10	7	10	7	y	0.58	11	8	11	8	y	0.47	7	8	7	8	y	0.41	7	10	7	10	y	0.60	9	6	9	6	y	0.50	5	5	5	5	y	0.44	8	10	8	10	y	0.45	5	6	5	6	y	0.00	0	18	0	18	n	ENSMUSG00000038497.8	Tmco3	chr8	protein_coding	transmembrane and coiled-coil domains 3
novel_NIR_18754	chr8	13388806	13389670	+	13388806	13389665	A3SS	ENSMUST00000209885.2	novel	0.33	2	4	2	4	y	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	ENSMUSG00000038482.12	Tfdp1	chr8	protein_coding	transcription factor Dp 1
novel_NIR_18755	chr8	13389146	13389665	+	13388806	13389665	A5SS	ENSMUST00000209885.2	novel	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.22	2	7	2	7	y	0.25	3	9	3	9	y	0.11	1	8	1	8	n	0.25	1	3	1	3	n	0.29	2	5	2	5	y	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	ENSMUSG00000038482.12	Tfdp1	chr8	protein_coding	transcription factor Dp 1
novel_NIR_18756	chr8	13389146	13389665	+	13388911	13389665	A5SS	ENSMUST00000210501.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038482.12	Tfdp1	chr8	protein_coding	transcription factor Dp 1
novel_NIR_18757	chr8	13389146	13389665	+	13388920	13389665	A5SS	ENSMUST00000211606.2	novel	0.00	0	14	0	14	n	0.08	1	12	1	12	n	0.00	0	19	0	19	n	0.00	0	21	0	21	n	0.06	2	31	2	31	n	0.12	3	21	3	21	n	0.09	1	10	1	10	n	0.08	1	11	1	11	n	0.20	2	8	2	8	y	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	ENSMUSG00000038482.12	Tfdp1	chr8	protein_coding	transcription factor Dp 1
novel_NIR_18758	chr8	13389146	13389665	+	13389440	13389665	5pMXE	ENSMUST00000209282.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038482.12	Tfdp1	chr8	protein_coding	transcription factor Dp 1
novel_NIR_18759	chr8	13419580	13420172	+	13419580	13420169	A3SS	ENSMUST00000210501.2	novel	0.73	8	3	8	3	y	0.57	4	3	4	3	y	0.75	3	1	3	1	y	0.43	6	8	6	8	y	0.53	8	7	8	7	y	0.25	2	6	2	6	y	0.80	4	1	4	1	y	0.67	2	1	2	1	y	0.25	1	3	1	3	n	0.14	1	6	1	6	n	0.20	1	4	1	4	n	0.33	1	2	1	2	n	ENSMUSG00000038482.12	Tfdp1	chr8	protein_coding	transcription factor Dp 1
novel_NIR_18760	chr8	13419580	13420172	+	13419580	13420481	A3SS	ENSMUST00000209885.2	novel	0.17	8	40	8	40	y	0.10	4	37	4	37	n	0.04	3	65	3	65	n	0.10	6	52	6	52	n	0.13	8	55	8	55	n	0.05	2	35	2	35	n	0.10	4	37	4	37	n	0.06	2	30	2	30	n	0.03	1	36	1	36	n	0.02	1	57	1	57	n	0.03	1	37	1	37	n	0.02	1	43	1	43	n	ENSMUSG00000038482.12	Tfdp1	chr8	protein_coding	transcription factor Dp 1
novel_NIR_18761	chr8	13919811	13921194	+	13919811	13927798	A3SS	ENSMUST00000051870.8	novel	0.00	0	5	0	5	n	-	-	-	-	-	-	0.21	3	11	3	11	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	ENSMUSG00000047710.9	Champ1	chr8	protein_coding	chromosome alignment maintaining phosphoprotein 1
novel_NIR_18762	chr8	14005817	14024517	-	14005817	14011729	5pMXE	ENSMUST00000193921.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	ENSMUSG00000050052.13	Tdrp	chr8	protein_coding	testis development related protein
novel_NIR_18763	chr8	14005817	14024517	-	14005817	14024541	A5SS	ENSMUST00000062613.12	novel	0.18	3	14	3	14	y	0.00	0	14	0	14	n	0.07	1	14	1	14	n	0.00	0	15	0	15	n	0.14	5	30	5	30	n	0.08	1	12	1	12	n	0.16	3	16	3	16	y	0.06	1	15	1	15	n	0.00	0	10	0	10	n	0.00	0	17	0	17	n	0.21	3	11	3	11	y	0.05	1	20	1	20	n	ENSMUSG00000050052.13	Tdrp	chr8	protein_coding	testis development related protein
novel_NIR_18764	chr8	14128916	14140177	-	14128916	14140241	A5SS	ENSMUST00000110813.5	novel	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.10	1	9	1	9	n	0.25	1	3	1	3	n	0.27	3	8	3	8	y	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000051978.10	Erich1	chr8	protein_coding	glutamate rich 1
novel_NIR_18765	chr8	15046429	15047542	+	15041234	15047542	A5SS	ENSMUST00000084207.12	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.40	2	3	2	3	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	ENSMUSG00000071176.11	Arhgef10	chr8	protein_coding	Rho guanine nucleotide exchange factor (GEF) 10
novel_NIR_18766	chr8	15046429	15047542	+	15046434	15047542	A5SS	ENSMUST00000162636.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000071176.11	Arhgef10	chr8	protein_coding	Rho guanine nucleotide exchange factor (GEF) 10
novel_NIR_18767	chr8	18677256	18681532	+	18677256;18679651	18679562;18681532	ES	ENSMUST00000039412.15	novel	0.00	0	1.0	0	2;0	n	0.00	0	2.5	0	2;3	n	0.00	0	2.0	0	2;2	n	0.00	0	6.0	0	8;4	n	0.00	0	4.0	0	2;6	n	0.00	0	7.5	0	5;10	n	0.29	2	5.0	2	4;6	y	0.00	0	5.5	0	3;8	n	0.00	0	4.0	0	7;1	n	0.00	0	3.5	0	3;4	n	0.00	0	3.0	0	3;3	n	0.00	0	3.5	0	3;4	n	ENSMUSG00000039842.16	Mcph1	chr8	protein_coding	microcephaly, primary autosomal recessive 1
novel_NIR_18768	chr8	18677256	18681532	+	18679651	18681532	A5SS&ES	ENSMUST00000133417.2	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.25	2	6	2	6	y	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000039842.16	Mcph1	chr8	protein_coding	microcephaly, primary autosomal recessive 1
novel_NIR_18769	chr8	18739075	18764692	+	18739075	18761570	3pMXE	ENSMUST00000124910.8	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039842.16	Mcph1	chr8	protein_coding	microcephaly, primary autosomal recessive 1
novel_NIR_18770	chr8	18739075	18764692	+	18739075	18838255	A3SS	ENSMUST00000039412.15	novel	0.43	3	4	3	4	y	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000039842.16	Mcph1	chr8	protein_coding	microcephaly, primary autosomal recessive 1
novel_NIR_18771	chr8	18781393	18838255	+	18739075	18838255	A5SS	ENSMUST00000039412.15	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000039842.16	Mcph1	chr8	protein_coding	microcephaly, primary autosomal recessive 1
novel_NIR_18772	chr8	19732671	19737620	+	19732504	19737620	A5SS	ENSMUST00000155660.9	novel	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.38	3	5	3	5	y	0.40	4	6	4	6	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.60	3	2	3	2	y	0.00	0	5	0	5	n	0.45	5	6	5	6	y	0.00	0	2	0	2	n	ENSMUSG00000087153.9	Gm6483	chr8	unprocessed_pseudogene	predicted gene 6483
novel_NIR_18773	chr8	19745123	19747520	+	19743734	19747520	A5SS	ENSMUST00000155660.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.50	1	1	1	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000087153.9	Gm6483	chr8	unprocessed_pseudogene	predicted gene 6483
novel_NIR_18774	chr8	19834866	20030551	+	20016688	20030551	5pMXE	ENSMUST00000140111.8	novel	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.08	1	11	1	11	n	0.00	0	14	0	14	n	-	-	-	-	-	-	0.29	2	5	2	5	y	0.20	1	4	1	4	n	0.33	2	4	2	4	y	1.00	3	0	3	0	y	0.64	7	4	7	4	y	0.30	3	7	3	7	y	ENSMUSG00000071793.13	2610005L07Rik	chr8	transcribed_unprocessed_pseudogene	RIKEN cDNA 2610005L07 gene
novel_NIR_18775	chr8	20045998	20052878	+	20042184	20052878	A5SS	ENSMUST00000140111.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	3	0	3	0	n	-	-	-	-	-	-	ENSMUSG00000071793.13	2610005L07Rik	chr8	transcribed_unprocessed_pseudogene	RIKEN cDNA 2610005L07 gene
novel_NIR_18776	chr8	20158175	20163110	+	20157999	20163110	A5SS	ENSMUST00000153748.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.50	3	3	3	3	y	0.33	2	4	2	4	y	1.00	6	0	6	0	y	0.20	1	4	1	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.17	1	5	1	5	n	-	-	-	-	-	-	0.44	4	5	4	5	y	ENSMUSG00000071796.14	6820431F20Rik	chr8	transcribed_unprocessed_pseudogene	RIKEN cDNA 6820431F20 gene
novel_NIR_18777	chr8	20158175	20163110	+	20158178	20163110	A5SS	ENSMUST00000150051.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	6	0	6	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000071796.14	6820431F20Rik	chr8	transcribed_unprocessed_pseudogene	RIKEN cDNA 6820431F20 gene
novel_NIR_18778	chr8	20163404	20167038	+	20163408	20167038	A5SS	ENSMUST00000153748.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.80	4	1	4	1	y	ENSMUSG00000071796.14	6820431F20Rik	chr8	transcribed_unprocessed_pseudogene	RIKEN cDNA 6820431F20 gene
novel_NIR_18779	chr8	20167157	20173025	+	20167157	20169060	A3SS&ES	ENSMUST00000150051.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000071796.14	6820431F20Rik	chr8	transcribed_unprocessed_pseudogene	RIKEN cDNA 6820431F20 gene
novel_NIR_18780	chr8	20167157	20173025	+	20167157	20169061	3pMXE	ENSMUST00000153748.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.33	1	2	1	2	n	-	-	-	-	-	-	ENSMUSG00000071796.14	6820431F20Rik	chr8	transcribed_unprocessed_pseudogene	RIKEN cDNA 6820431F20 gene
novel_NIR_18781	chr8	20167157	20179857	+	20167157	20169061	3pMXE	ENSMUST00000153748.2	novel	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000071796.14	6820431F20Rik	chr8	transcribed_unprocessed_pseudogene	RIKEN cDNA 6820431F20 gene
novel_NIR_18782	chr8	20717496	20721121	+	20717492	20721121	A5SS	ENSMUST00000096485.6	novel	0.67	18	9	18	9	y	0.75	12	4	12	4	y	0.26	5	14	5	14	y	0.58	14	10	14	10	y	0.25	6	18	6	18	y	0.83	5	1	5	1	y	0.56	9	7	9	7	y	0.00	0	9	0	9	n	0.79	11	3	11	3	y	1.00	19	0	19	0	y	0.68	13	6	13	6	y	0.22	2	7	2	7	y	ENSMUSG00000096401.3	Gm21811	chr8	unprocessed_pseudogene	predicted gene, 21811
novel_NIR_18783	chr8	20717496	20727082	+	20723317	20727082	A5SS&ES	ENSMUST00000096485.6	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.33	2	4	2	4	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000096401.3	Gm21811	chr8	unprocessed_pseudogene	predicted gene, 21811
novel_NIR_18784	chr8	20721240	20727082	+	20721240;20723317	20723150;20727082	ES	ENSMUST00000096485.6	novel	0.84	8	1.5	8	3;0	y	0.93	7	0.5	7	0;1	y	0.80	6	1.5	6	3;0	y	0.95	26	1.5	26	3;0	y	0.90	14	1.5	14	3;0	y	0.00	0	1.0	0	2;0	n	0.84	8	1.5	8	3;0	y	0.00	0	2.0	0	0;4	n	0.73	4	1.5	4	3;0	y	0.90	13	1.5	13	3;0	y	0.95	21	1.0	21	2;0	y	1.00	14	0.0	14	0;0	y	ENSMUSG00000096401.3	Gm21811	chr8	unprocessed_pseudogene	predicted gene, 21811
novel_NIR_18785	chr8	21090444	21112755	+	21107821	21112755	5pMXE	ENSMUST00000178995.3	novel	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000095403.9	Gm21092	chr8	unprocessed_pseudogene	predicted gene, 21092
novel_NIR_18786	chr8	21107654	21112755	+	21107821	21112755	A5SS	ENSMUST00000178995.3	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	1.00	4	0	4	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000095403.9	Gm21092	chr8	unprocessed_pseudogene	predicted gene, 21092
novel_NIR_18787	chr8	21116804	21122629	+	21116804;21118864	21118697;21122629	ES	ENSMUST00000178995.3	novel	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	0.33	1	2.0	1	4;0	n	0.75	3	1.0	3	1;1	y	0.67	1	0.5	1	1;0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2.0	0	3;1	n	0.00	0	4.5	0	9;0	n	1.00	4	0.0	4	0;0	y	0.00	0	0.5	0	1;0	n	0.00	0	1.5	0	3;0	n	ENSMUSG00000095403.9	Gm21092	chr8	unprocessed_pseudogene	predicted gene, 21092
novel_NIR_18788	chr8	22518752	22529238	-	22518752	22549988	A5SS	ENSMUST00000006742.11	novel	0.00	0	10	0	10	n	0.50	4	4	4	4	y	0.00	0	7	0	7	n	0.10	1	9	1	9	n	0.06	1	15	1	15	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.08	1	12	1	12	n	0.10	1	9	1	9	n	0.43	6	8	6	8	y	0.00	0	9	0	9	n	0.10	1	9	1	9	n	ENSMUSG00000006567.12	Atp7b	chr8	protein_coding	ATPase, Cu++ transporting, beta polypeptide
novel_NIR_18789	chr8	22550425	22551902	+	22550786	22551902	5pMXE	ENSMUST00000072572.13	novel	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	22	0	22	n	0.12	1	7	1	7	n	0.00	0	14	0	14	n	0.10	2	18	2	18	n	0.00	0	12	0	12	n	0.07	1	14	1	14	n	0.33	2	4	2	4	y	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.23	3	10	3	10	y	ENSMUSG00000063362.14	Alg11	chr8	protein_coding	asparagine-linked glycosylation 11 (alpha-1,2-mannosyltransferase)
novel_NIR_18790	chr8	22550702	22551902	+	22550786	22551902	5pMXE	ENSMUST00000072572.13	novel	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.08	2	22	2	22	n	0.22	2	7	2	7	y	0.00	0	14	0	14	n	0.05	1	18	1	18	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	4	0	4	n	0.06	1	16	1	16	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	ENSMUSG00000063362.14	Alg11	chr8	protein_coding	asparagine-linked glycosylation 11 (alpha-1,2-mannosyltransferase)
novel_NIR_18791	chr8	22552136	22555016	+	22550786	22555016	A5SS	ENSMUST00000131624.2	novel	1.00	11	0	11	0	y	-	-	-	-	-	-	1.00	13	0	13	0	y	1.00	6	0	6	0	y	1.00	19	0	19	0	y	1.00	10	0	10	0	y	1.00	6	0	6	0	y	1.00	5	0	5	0	y	1.00	7	0	7	0	y	1.00	14	0	14	0	y	1.00	12	0	12	0	y	1.00	18	0	18	0	y	ENSMUSG00000063362.14	Alg11	chr8	protein_coding	asparagine-linked glycosylation 11 (alpha-1,2-mannosyltransferase)
novel_NIR_18792	chr8	22552136	22555016	+	22552132	22555016	A5SS	ENSMUST00000072572.13	novel	0.35	11	20	11	20	y	0.00	0	8	0	8	n	0.30	13	30	13	30	y	0.16	6	31	6	31	y	0.33	19	38	19	38	y	0.38	10	16	10	16	y	0.24	6	19	6	19	y	0.20	5	20	5	20	y	0.33	7	14	7	14	y	0.33	14	28	14	28	y	0.44	12	15	12	15	y	0.34	18	35	18	35	y	ENSMUSG00000063362.14	Alg11	chr8	protein_coding	asparagine-linked glycosylation 11 (alpha-1,2-mannosyltransferase)
novel_NIR_18793	chr8	22552136	22555142	+	22552132	22555142	A5SS	ENSMUST00000110737.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	2	4	2	4	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000063362.14	Alg11	chr8	protein_coding	asparagine-linked glycosylation 11 (alpha-1,2-mannosyltransferase)
novel_NIR_18794	chr8	22552524	22555016	+	22550786	22555016	A5SS	ENSMUST00000131624.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000063362.14	Alg11	chr8	protein_coding	asparagine-linked glycosylation 11 (alpha-1,2-mannosyltransferase)
novel_NIR_18795	chr8	22623111	22636947	-	22623111;22632955	22632906;22636947	ES	ENSMUST00000033865.16	novel	0.00	0	6.0	0	5;7	n	0.00	0	3.5	0	4;3	n	1.00	1	0.0	1	0;0	n	0.00	0	7.5	0	7;8	n	0.00	0	0.5	0	1;0	n	0.00	0	2.5	0	2;3	n	0.25	1	3.0	1	3;3	n	0.00	0	4.5	0	5;4	n	0.38	3	5.0	3	5;5	y	0.22	1	3.5	1	2;5	n	0.00	0	3.0	0	2;4	n	-	-	-	-	-	-	ENSMUSG00000031478.17	Nek3	chr8	protein_coding	NIMA (never in mitosis gene a)-related expressed kinase 3
novel_NIR_18796	chr8	22966635	23025035	+	22967054	23025035	5pMXE	ENSMUST00000209305.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037656.10	Slc20a2	chr8	protein_coding	solute carrier family 20, member 2
novel_NIR_18797	chr8	22966635	23025035	+	22996308	23025035	5pMXE	ENSMUST00000209347.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037656.10	Slc20a2	chr8	protein_coding	solute carrier family 20, member 2
novel_NIR_18798	chr8	22972070	22972917	+	22972070	22972802	A3SS	ENSMUST00000180411.3	novel	0.18	6	28	6	28	y	0.00	0	17	0	17	n	0.00	0	21	0	21	n	0.04	1	25	1	25	n	0.19	4	17	4	17	y	0.12	1	7	1	7	n	0.00	0	28	0	28	n	0.12	2	15	2	15	n	0.00	0	22	0	22	n	0.03	1	33	1	33	n	0.06	1	17	1	17	n	0.03	1	32	1	32	n	ENSMUSG00000097042.3	Gm17491	chr8	lncRNA	predicted gene, 17491
novel_NIR_18799	chr8	23400262	23401676	+	23400283	23401676	A5SS	ENSMUST00000238975.2	novel	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.07	1	13	1	13	n	0.38	3	5	3	5	y	0.00	0	17	0	17	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	20	0	20	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	ENSMUSG00000031540.15	Kat6a	chr8	protein_coding	K(lysine) acetyltransferase 6A
novel_NIR_18800	chr8	23401992	23403621	+	23401992	23404285	A3SS	ENSMUST00000238975.2	novel	0.00	0	12	0	12	n	0.00	0	1	0	1	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.00	0	19	0	19	n	0.00	0	5	0	5	n	0.20	2	8	2	8	y	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	24	0	24	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	ENSMUSG00000031540.15	Kat6a	chr8	protein_coding	K(lysine) acetyltransferase 6A
novel_NIR_18801	chr8	24902814	24903073	+	24902271	24903073	A5SS	ENSMUST00000208709.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000109141.2	Gm30692	chr8	lncRNA	predicted gene, 30692
novel_NIR_18802	chr8	24902827	24903073	+	24902271	24903073	A5SS	ENSMUST00000208709.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000109141.2	Gm30692	chr8	lncRNA	predicted gene, 30692
novel_NIR_18803	chr8	24903229	24905120	+	24903229;24904161	24904107;24905120	ES	ENSMUST00000208709.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0.0	3	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000109141.2	Gm30692	chr8	lncRNA	predicted gene, 30692
novel_NIR_18804	chr8	25043856	25063845	-	25043856	25044257	5pMXE	ENSMUST00000140417.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031549.17	Ido2	chr8	protein_coding	indoleamine 2,3-dioxygenase 2
novel_NIR_18805	chr8	25043856	25066166	-	25043856	25044257	5pMXE	ENSMUST00000140417.9	novel	1.00	10	0	10	0	y	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	14	0	14	0	y	1.00	14	0	14	0	y	1.00	3	0	3	0	y	1.00	24	0	24	0	y	1.00	5	0	5	0	y	1.00	21	0	21	0	y	1.00	17	0	17	0	y	1.00	13	0	13	0	y	1.00	17	0	17	0	y	ENSMUSG00000031549.17	Ido2	chr8	protein_coding	indoleamine 2,3-dioxygenase 2
novel_NIR_18806	chr8	25043856	25066166	-	25043856;25048259	25048164;25066166	ES	ENSMUST00000121992.2	novel	0.07	10	126.0	10	108;144	n	0.08	5	58.0	5	53;63	n	0.06	2	31.0	2	32;30	n	0.07	14	189.0	14	147;231	n	0.07	14	184.5	14	154;215	n	0.05	3	57.5	3	52;63	n	0.16	24	121.5	24	96;147	y	0.06	5	78.5	5	63;94	n	0.20	21	83.5	21	71;96	y	0.11	17	135.0	17	119;151	n	0.13	13	85.0	13	73;97	n	0.15	17	93.5	17	70;117	y	ENSMUSG00000031549.17	Ido2	chr8	protein_coding	indoleamine 2,3-dioxygenase 2
novel_NIR_18807	chr8	25056143	25066166	-	25048259	25066166	A3SS	ENSMUST00000121992.2	novel	0.07	11	144	11	144	n	0.21	17	63	17	63	y	0.32	14	30	14	30	y	0.07	18	231	18	231	n	0.07	16	215	16	215	n	0.20	16	63	16	63	y	0.13	22	147	22	147	n	0.09	9	94	9	94	n	0.15	17	96	17	96	y	0.12	20	151	20	151	n	0.20	24	97	24	97	y	0.11	14	117	14	117	n	ENSMUSG00000031549.17	Ido2	chr8	protein_coding	indoleamine 2,3-dioxygenase 2
novel_NIR_18808	chr8	25057067	25066166	-	25048259	25066166	A3SS	ENSMUST00000121992.2	novel	0.02	3	144	3	144	n	0.12	9	63	9	63	n	0.21	8	30	8	30	y	0.03	7	231	7	231	n	0.03	6	215	6	215	n	0.02	1	63	1	63	n	0.06	9	147	9	147	n	0.04	4	94	4	94	n	0.06	6	96	6	96	n	0.05	8	151	8	151	n	0.07	7	97	7	97	n	0.02	2	117	2	117	n	ENSMUSG00000031549.17	Ido2	chr8	protein_coding	indoleamine 2,3-dioxygenase 2
novel_NIR_18809	chr8	25064030	25066166	-	25048259	25066166	A3SS	ENSMUST00000121992.2	novel	0.10	16	144	16	144	n	0.16	12	63	12	63	n	0.19	7	30	7	30	y	0.06	15	231	15	231	n	0.09	22	215	22	215	n	0.10	7	63	7	63	n	0.10	17	147	17	147	n	0.08	8	94	8	94	n	0.13	14	96	14	96	n	0.07	12	151	12	151	n	0.16	19	97	19	97	y	0.07	9	117	9	117	n	ENSMUSG00000031549.17	Ido2	chr8	protein_coding	indoleamine 2,3-dioxygenase 2
novel_NIR_18810	chr8	25342294	25353511	-	25342294	25353405	A5SS	ENSMUST00000121438.9	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.14	1	6	1	6	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000037437.19	Adam32	chr8	protein_coding	a disintegrin and metallopeptidase domain 32
novel_NIR_18811	chr8	25342294	25353511	-	25342294	25360702	A5SS	ENSMUST00000173069.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037437.19	Adam32	chr8	protein_coding	a disintegrin and metallopeptidase domain 32
novel_NIR_18812	chr8	25342294	25353511	-	25342294	25374454	A5SS	ENSMUST00000140573.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037437.19	Adam32	chr8	protein_coding	a disintegrin and metallopeptidase domain 32
novel_NIR_18813	chr8	25342294	25359613	-	25342294	25353405	A5SS&ES	ENSMUST00000121438.9	novel	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.60	9	6	9	6	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000037437.19	Adam32	chr8	protein_coding	a disintegrin and metallopeptidase domain 32
novel_NIR_18814	chr8	25342294	25359613	-	25342294	25360702	A5SS	ENSMUST00000173069.8	novel	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	9	0	9	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000037437.19	Adam32	chr8	protein_coding	a disintegrin and metallopeptidase domain 32
novel_NIR_18815	chr8	25342294	25359613	-	25342294	25374454	A5SS	ENSMUST00000140573.8	novel	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	9	0	9	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000037437.19	Adam32	chr8	protein_coding	a disintegrin and metallopeptidase domain 32
novel_NIR_18816	chr8	25354468	25359613	-	25354468	25360702	A5SS	ENSMUST00000121438.9	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	ENSMUSG00000037437.19	Adam32	chr8	protein_coding	a disintegrin and metallopeptidase domain 32
novel_NIR_18817	chr8	25484177	25485126	-	25484100	25485126	A3SS	ENSMUST00000211319.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031555.16	Adam9	chr8	protein_coding	a disintegrin and metallopeptidase domain 9 (meltrin gamma)
novel_NIR_18818	chr8	25668010	25746378	-	25668010	25691138	5pMXE	ENSMUST00000084512.11	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.75	3	1	3	1	y	0.62	5	3	5	3	y	1.00	4	0	4	0	y	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.40	2	3	2	3	y	-	-	-	-	-	-	0.80	4	1	4	1	y	0.33	1	2	1	2	n	-	-	-	-	-	-	ENSMUSG00000065954.12	Tacc1	chr8	protein_coding	transforming, acidic coiled-coil containing protein 1
novel_NIR_18819	chr8	25668010	25746378	-	25668010	25730810	5pMXE	ENSMUST00000210933.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.60	3	2	3	2	y	1.00	5	0	5	0	y	0.80	4	1	4	1	y	0.00	0	1	0	1	n	0.60	3	2	3	2	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	ENSMUSG00000065954.12	Tacc1	chr8	protein_coding	transforming, acidic coiled-coil containing protein 1
novel_NIR_18820	chr8	25668010	25746378	-	25668010	25731510	5pMXE	ENSMUST00000210016.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	5	0	5	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	0.80	4	1	4	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000065954.12	Tacc1	chr8	protein_coding	transforming, acidic coiled-coil containing protein 1
novel_NIR_18821	chr8	25668010	25746378	-	25668010;25690222	25690107;25746378	ES	ENSMUST00000210767.2	novel	0.00	0	4.0	0	5;3	n	0.33	1	2.0	1	0;4	n	0.17	3	15.0	3	13;17	y	0.45	5	6.0	5	7;5	y	0.30	4	9.5	4	11;8	y	0.00	0	7.0	0	5;9	n	0.50	3	3.0	3	2;4	y	0.24	2	6.5	2	6;7	y	0.00	0	5.0	0	4;6	n	0.40	4	6.0	4	6;6	y	0.40	1	1.5	1	1;2	n	0.00	0	6.5	0	5;8	n	ENSMUSG00000065954.12	Tacc1	chr8	protein_coding	transforming, acidic coiled-coil containing protein 1
novel_NIR_18822	chr8	25672946	25745774	-	25672946	25690107	A5SS&ES	ENSMUST00000209827.2	novel	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.00	0	18	0	18	n	0.00	0	4	0	4	n	0.22	2	7	2	7	y	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	ENSMUSG00000065954.12	Tacc1	chr8	protein_coding	transforming, acidic coiled-coil containing protein 1
novel_NIR_18823	chr8	25672946	25745774	-	25672946	25691138	5pMXE	ENSMUST00000211584.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000065954.12	Tacc1	chr8	protein_coding	transforming, acidic coiled-coil containing protein 1
novel_NIR_18824	chr8	25672946	25745774	-	25672946	25730810	5pMXE	ENSMUST00000210488.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000065954.12	Tacc1	chr8	protein_coding	transforming, acidic coiled-coil containing protein 1
novel_NIR_18825	chr8	25745854	25746378	-	25690222	25746378	A3SS	ENSMUST00000209827.2	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.11	2	17	2	17	n	0.00	0	5	0	5	n	0.20	2	8	2	8	y	0.10	1	9	1	9	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.27	3	8	3	8	n	ENSMUSG00000065954.12	Tacc1	chr8	protein_coding	transforming, acidic coiled-coil containing protein 1
novel_NIR_18826	chr8	25745854	25746378	-	25690222	25746378	A3SS	ENSMUST00000210767.2	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.11	2	17	2	17	n	0.00	0	5	0	5	n	0.20	2	8	2	8	n	0.10	1	9	1	9	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.27	3	8	3	8	y	ENSMUSG00000065954.12	Tacc1	chr8	protein_coding	transforming, acidic coiled-coil containing protein 1
novel_NIR_18827	chr8	26069824	26070332	-	26069810	26070332	A3SS	ENSMUST00000079160.8	novel	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.33	2	4	2	4	y	0.00	0	4	0	4	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	ENSMUSG00000037363.10	Letm2	chr8	protein_coding	leucine zipper-EF-hand containing transmembrane protein 2
novel_NIR_18828	chr8	26092372	26130593	+	26092752	26130593	A5SS	ENSMUST00000136107.9	novel	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	36	0	36	n	0.00	0	16	0	16	n	0.00	0	28	0	28	n	0.00	0	17	0	17	n	0.00	0	27	0	27	n	0.22	2	7	2	7	y	0.00	0	14	0	14	n	0.00	0	26	0	26	n	0.00	0	13	0	13	n	0.00	0	32	0	32	n	ENSMUSG00000054823.18	Nsd3	chr8	protein_coding	nuclear receptor binding SET domain protein 3
novel_NIR_18829	chr8	26211813	26212442	+	26211813	26212499	A3SS	ENSMUST00000145678.8	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000031570.18	Plpp5	chr8	protein_coding	phospholipid phosphatase 5
novel_NIR_18830	chr8	26211813	26212580	+	26211813	26212499	A3SS	ENSMUST00000145678.8	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.37	7	12	7	12	y	0.00	0	4	0	4	n	0.60	3	2	3	2	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000031570.18	Plpp5	chr8	protein_coding	phospholipid phosphatase 5
novel_NIR_18831	chr8	26212627	26212990	+	26212627	26214208	A3SS	ENSMUST00000210629.2	novel	1.00	7	0	7	0	y	1.00	5	0	5	0	n	0.25	3	9	3	9	n	1.00	2	0	2	0	n	1.00	4	0	4	0	n	0.69	9	4	9	4	n	1.00	5	0	5	0	y	1.00	3	0	3	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000031570.18	Plpp5	chr8	protein_coding	phospholipid phosphatase 5
novel_NIR_18832	chr8	26212627	26214159	+	26212627	26214208	A3SS	ENSMUST00000210629.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	9	0	9	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031570.18	Plpp5	chr8	protein_coding	phospholipid phosphatase 5
novel_NIR_18833	chr8	26212627;26213140	26212990;26214208	+	26212627	26214208	cassetteExon	ENSMUST00000210629.2	novel	1.00	3.5	0	7;0	0	n	1.00	3.5	0	5;2	0	y	0.31	4.0	9	3;5	9	y	1.00	2.0	0	2;2	0	y	1.00	2.5	0	4;1	0	n	0.58	5.5	4	9;2	4	y	1.00	2.5	0	5;0	0	n	1.00	2.5	0	3;2	0	y	-	-	-	-	-	-	1.00	0.5	0	1;0	0	n	-	-	-	-	-	-	1.00	1.5	0	1;2	0	n	ENSMUSG00000031570.18	Plpp5	chr8	protein_coding	phospholipid phosphatase 5
novel_NIR_18834	chr8	26243200	26244070	-	26243200	26244213	A5SS	ENSMUST00000033975.9	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.09	1	10	1	10	n	0.40	2	3	2	3	y	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.20	2	8	2	8	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	ENSMUSG00000061313.11	Ddhd2	chr8	protein_coding	DDHD domain containing 2
novel_NIR_18835	chr8	26243200	26244070	-	26243200	26244294	A5SS	ENSMUST00000211688.4	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.08	1	11	1	11	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.20	2	8	2	8	y	0.00	0	6	0	6	n	0.00	0	3	0	3	n	ENSMUSG00000061313.11	Ddhd2	chr8	protein_coding	DDHD domain containing 2
novel_NIR_18836	chr8	26275745	26276305	+	26275745	26291956	A3SS	ENSMUST00000211168.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037296.8	Lsm1	chr8	protein_coding	LSM1 homolog, mRNA degradation associated
novel_NIR_18837	chr8	26275745	26282165	+	26275745	26291956	A3SS	ENSMUST00000211168.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037296.8	Lsm1	chr8	protein_coding	LSM1 homolog, mRNA degradation associated
novel_NIR_18838	chr8	26285824	26291956	+	26275745	26291956	A5SS	ENSMUST00000211168.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037296.8	Lsm1	chr8	protein_coding	LSM1 homolog, mRNA degradation associated
novel_NIR_18839	chr8	26318875	26321301	-	26317419	26321301	A3SS	ENSMUST00000139946.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000031575.19	Ash2l	chr8	protein_coding	ASH2 like histone lysine methyltransferase complex subunit
novel_NIR_18840	chr8	26462985	26463609	-	26462985	26463988	A5SS	ENSMUST00000211550.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037260.9	Hgsnat	chr8	protein_coding	heparan-alpha-glucosaminide N-acetyltransferase
novel_NIR_18841	chr8	26462985	26467053	-	26462985	26463988	5pMXE	ENSMUST00000211550.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037260.9	Hgsnat	chr8	protein_coding	heparan-alpha-glucosaminide N-acetyltransferase
novel_NIR_18842	chr8	26473672	26473935	-	26473672	26476274	A5SS	ENSMUST00000061850.5	novel	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.33	2	4	2	4	y	0.10	1	9	1	9	n	0.09	2	21	2	21	n	0.00	0	11	0	11	n	0.10	1	9	1	9	n	0.06	1	17	1	17	n	0.00	0	5	0	5	n	0.00	0	16	0	16	n	0.25	2	6	2	6	y	0.10	1	9	1	9	n	ENSMUSG00000037251.6	Pomk	chr8	protein_coding	protein-O-mannose kinase
novel_NIR_18843	chr8	26609987	26610468	+	26609628	26610468	A5SS	ENSMUST00000014022.15	novel	0.06	1	16	1	16	n	0.00	0	12	0	12	n	0.31	4	9	4	9	y	0.26	6	17	6	17	y	0.26	12	34	12	34	y	0.20	5	20	5	20	y	0.32	7	15	7	15	y	0.20	6	24	6	24	y	0.23	3	10	3	10	y	0.11	4	31	4	31	n	0.22	5	18	5	18	y	0.41	18	26	18	26	y	ENSMUSG00000013878.19	Rnf170	chr8	protein_coding	ring finger protein 170
novel_NIR_18844	chr8	26609987	26610468	+	26609987	26610473	A3SS	ENSMUST00000140819.8	novel	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.40	4	6	4	6	y	1.00	6	0	6	0	y	0.86	12	2	12	2	y	0.56	5	4	5	4	y	0.78	7	2	7	2	y	0.67	6	3	6	3	y	0.75	3	1	3	1	y	0.80	4	1	4	1	y	0.83	5	1	5	1	y	0.82	18	4	18	4	y	ENSMUSG00000013878.19	Rnf170	chr8	protein_coding	ring finger protein 170
novel_NIR_18845	chr8	26619183	26619844	+	26619183	26628733	A3SS	ENSMUST00000110579.10	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000013878.19	Rnf170	chr8	protein_coding	ring finger protein 170
novel_NIR_18846	chr8	26619183	26619844	+	26619183	26628897	A3SS	ENSMUST00000124867.3	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000013878.19	Rnf170	chr8	protein_coding	ring finger protein 170
novel_NIR_18847	chr8	26619183	26619844	+	26619183	26640614	A3SS	ENSMUST00000209300.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000013878.19	Rnf170	chr8	protein_coding	ring finger protein 170
novel_NIR_18848	chr8	26619183	26619844	+	26619183	26650803	A3SS	ENSMUST00000131138.9	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000109850.2	Gm45692	chr8	protein_coding	predicted gene 45692
novel_NIR_18849	chr8	26619183	26625149	+	26619183	26628733	A3SS	ENSMUST00000110579.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000013878.19	Rnf170	chr8	protein_coding	ring finger protein 170
novel_NIR_18850	chr8	26619183	26625149	+	26619183	26628897	A3SS	ENSMUST00000124867.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	ENSMUSG00000013878.19	Rnf170	chr8	protein_coding	ring finger protein 170
novel_NIR_18851	chr8	26619183	26625149	+	26619183	26629008	A3SS	ENSMUST00000124757.8	novel	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	4	0	4	n	0.17	2	10	2	10	y	ENSMUSG00000013878.19	Rnf170	chr8	protein_coding	ring finger protein 170
novel_NIR_18852	chr8	26619183	26625149	+	26619183	26640614	A3SS	ENSMUST00000209300.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000013878.19	Rnf170	chr8	protein_coding	ring finger protein 170
novel_NIR_18853	chr8	26619183	26625149	+	26619183	26650803	A3SS	ENSMUST00000131138.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000109850.2	Gm45692	chr8	protein_coding	predicted gene 45692
novel_NIR_18854	chr8	26625730	26628897	+	26619183	26628897	A5SS	ENSMUST00000124867.3	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.75	3	1	3	1	y	0.83	5	1	5	1	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000013878.19	Rnf170	chr8	protein_coding	ring finger protein 170
novel_NIR_18855	chr8	26625730	26628897	+	26628777	26628897	A5SS&ES	ENSMUST00000110579.10	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000013878.19	Rnf170	chr8	protein_coding	ring finger protein 170
novel_NIR_18856	chr8	26649543	26650803	+	26619183	26650803	A5SS	ENSMUST00000131138.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000109850.2	Gm45692	chr8	protein_coding	predicted gene 45692
novel_NIR_18857	chr8	26649543	26650803	+	26649178	26650803	A5SS	ENSMUST00000130231.2	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037214.13	Thap1	chr8	protein_coding	THAP domain containing, apoptosis associated protein 1
novel_NIR_18858	chr8	27515206	27517199	+	27515206	27517197	A3SS	ENSMUST00000209795.2	novel	0.15	4	22	4	22	y	0.00	0	16	0	16	n	0.00	0	48	0	48	n	0.04	2	45	2	45	n	0.00	0	46	0	46	n	0.12	3	23	3	23	n	0.00	0	35	0	35	n	0.00	0	35	0	35	n	0.00	0	25	0	25	n	0.00	0	46	0	46	n	0.00	0	40	0	40	n	0.00	0	51	0	51	n	ENSMUSG00000031483.9	Erlin2	chr8	protein_coding	ER lipid raft associated 2
novel_NIR_18859	chr8	27542362	27545711	+	27542362	27543140	3pMXE	ENSMUST00000211393.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031485.16	Plpbp	chr8	protein_coding	pyridoxal phosphate binding protein
novel_NIR_18860	chr8	27716410	27716754	-	27716497	27716754	A3SS	ENSMUST00000121838.2	novel	0.46	13	15	13	15	y	0.41	9	13	9	13	y	0.64	7	4	7	4	y	0.44	8	10	8	10	y	0.65	13	7	13	7	y	0.60	3	2	3	2	y	0.27	6	16	6	16	y	0.65	11	6	11	6	y	0.64	7	4	7	4	y	0.73	11	4	11	4	y	0.38	3	5	3	5	y	0.25	1	3	1	3	n	ENSMUSG00000031489.16	Adrb3	chr8	protein_coding	adrenergic receptor, beta 3
novel_NIR_18861	chr8	27716410	27716754	-	27716556	27716754	A3SS	ENSMUST00000081438.10	novel	1.00	13	0	13	0	y	0.82	9	2	9	2	y	0.54	7	6	7	6	y	0.62	8	5	8	5	y	0.81	13	3	13	3	y	1.00	3	0	3	0	y	0.75	6	2	6	2	y	0.79	11	3	11	3	y	1.00	7	0	7	0	y	0.73	11	4	11	4	y	1.00	3	0	3	0	y	0.20	1	4	1	4	n	ENSMUSG00000031489.16	Adrb3	chr8	protein_coding	adrenergic receptor, beta 3
novel_NIR_18862	chr8	27716468	27716754	-	27716556	27716754	A3SS	ENSMUST00000081438.10	novel	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000031489.16	Adrb3	chr8	protein_coding	adrenergic receptor, beta 3
novel_NIR_18863	chr8	27719312	27719891	-	27719419	27719891	A3SS	ENSMUST00000209447.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	ENSMUSG00000031489.16	Adrb3	chr8	protein_coding	adrenergic receptor, beta 3
novel_NIR_18864	chr8	27720061	27730215	-	27720061	27720730	5pMXE	ENSMUST00000209447.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031489.16	Adrb3	chr8	protein_coding	adrenergic receptor, beta 3
novel_NIR_18865	chr8	27720120	27739176	-	27719324	27739176	A3SS	ENSMUST00000211346.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031489.16	Adrb3	chr8	protein_coding	adrenergic receptor, beta 3
novel_NIR_18866	chr8	27723586	27739176	-	27719324	27739176	A3SS	ENSMUST00000211346.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031489.16	Adrb3	chr8	protein_coding	adrenergic receptor, beta 3
novel_NIR_18867	chr8	27725676	27739176	-	27719324	27739176	A3SS	ENSMUST00000211346.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031489.16	Adrb3	chr8	protein_coding	adrenergic receptor, beta 3
novel_NIR_18868	chr8	27739025	27739176	-	27719324	27739176	A3SS	ENSMUST00000211346.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031489.16	Adrb3	chr8	protein_coding	adrenergic receptor, beta 3
novel_NIR_18869	chr8	27739237	27740645	-	27739237	27740518	A5SS&ES	ENSMUST00000211346.2	novel	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.05	1	20	1	20	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.27	3	8	3	8	y	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	ENSMUSG00000031489.16	Adrb3	chr8	protein_coding	adrenergic receptor, beta 3
novel_NIR_18870	chr8	31641397	31643537	+	31641527	31643537	A5SS	ENSMUST00000209851.2	novel	0.00	0	42	0	42	n	0.00	0	28	0	28	n	0.00	0	36	0	36	n	0.00	0	51	0	51	n	0.00	0	62	0	62	n	0.00	0	17	0	17	n	0.00	0	40	0	40	n	0.00	0	25	0	25	n	0.00	0	26	0	26	n	0.00	0	33	0	33	n	0.17	4	20	4	20	y	0.00	0	49	0	49	n	ENSMUSG00000031577.11	Tti2	chr8	protein_coding	TELO2 interacting protein 2
novel_NIR_18871	chr8	3192952	3203461	-	3172154	3203461	A3SS	ENSMUST00000208839.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000005534.11	Insr	chr8	protein_coding	insulin receptor
novel_NIR_18872	chr8	3217601	3219709	-	3217604	3219709	A3SS	ENSMUST00000091291.5	novel	0.14	5	31	5	31	n	0.24	8	25	8	25	y	0.22	21	75	21	75	y	0.19	13	55	13	55	y	0.25	26	79	26	79	y	0.11	5	41	5	41	n	0.18	14	65	14	65	y	0.12	8	58	8	58	n	0.20	10	39	10	39	y	0.27	22	60	22	60	y	0.17	7	33	7	33	y	0.24	17	55	17	55	y	ENSMUSG00000005534.11	Insr	chr8	protein_coding	insulin receptor
novel_NIR_18873	chr8	33843427	33875470	-	33843427	33851196	A5SS&ES	ENSMUST00000209293.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	ENSMUSG00000031583.14	Wrn	chr8	protein_coding	Werner syndrome RecQ like helicase
novel_NIR_18874	chr8	33843427	33875470	-	33843427	33875370	A5SS	ENSMUST00000033990.7	novel	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.22	2	7	2	7	y	ENSMUSG00000031583.14	Wrn	chr8	protein_coding	Werner syndrome RecQ like helicase
novel_NIR_18875	chr8	33843427	33875470	-	33843427	33875480	A5SS	ENSMUST00000033991.13	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000031583.14	Wrn	chr8	protein_coding	Werner syndrome RecQ like helicase
novel_NIR_18876	chr8	33877236	33879197	+	33877236	33906585	A3SS	ENSMUST00000078058.5	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.75	3	1	3	1	y	0.00	0	1	0	1	n	0.33	1	2	1	2	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.50	2	2	2	2	n	0.00	0	3	0	3	n	0.60	3	2	3	2	y	ENSMUSG00000049184.7	Purg	chr8	protein_coding	purine-rich element binding protein G
novel_NIR_18877	chr8	33877236	33906718	+	33877236	33906585	A3SS	ENSMUST00000078058.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	0.25	1	3	1	3	n	0.00	0	2	0	2	n	ENSMUSG00000049184.7	Purg	chr8	protein_coding	purine-rich element binding protein G
novel_NIR_18878	chr8	33877236;33879325	33879197;33906585	+	33877236	33906585	cassetteExon	ENSMUST00000078058.5	novel	1.00	0.5	0	1;0	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	0.5	1	1;0	1	n	0.60	1.5	1	3;0	1	n	0.00	0.0	1	0;0	1	n	0.20	0.5	2	1;0	2	n	1.00	0.5	0	1;0	0	n	1.00	1.0	0	2;0	0	n	0.50	2.0	2	2;2	2	y	0.00	0.0	3	0;0	3	n	0.43	1.5	2	3;0	2	n	ENSMUSG00000049184.7	Purg	chr8	protein_coding	purine-rich element binding protein G
novel_NIR_18879	chr8	34142472	34159181	+	34142598	34159181	5pMXE	ENSMUST00000154745.8	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.83	10	2	10	2	y	1.00	18	0	18	0	y	1.00	20	0	20	0	y	0.83	5	1	5	1	y	1.00	7	0	7	0	y	1.00	8	0	8	0	y	1.00	8	0	8	0	y	1.00	9	0	9	0	y	1.00	6	0	6	0	y	1.00	15	0	15	0	y	ENSMUSG00000031584.17	Gsr	chr8	protein_coding	glutathione reductase
novel_NIR_18880	chr8	34142472	34159181	+	34143807	34159181	5pMXE	ENSMUST00000033992.9	novel	0.05	3	62	3	62	n	0.02	1	65	1	65	n	0.05	10	188	10	188	n	0.15	18	104	18	104	y	0.12	20	144	20	144	n	0.05	5	99	5	99	n	0.08	7	86	7	86	n	0.15	8	46	8	46	y	0.09	8	83	8	83	n	0.06	9	139	9	139	n	0.05	6	107	6	107	n	0.12	15	111	15	111	n	ENSMUSG00000031584.17	Gsr	chr8	protein_coding	glutathione reductase
novel_NIR_18881	chr8	34142472	34159181	+	34159062	34159181	5pMXE	ENSMUST00000149528.2	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	10	0	10	0	y	1.00	18	0	18	0	y	1.00	20	0	20	0	y	1.00	5	0	5	0	y	1.00	7	0	7	0	y	1.00	8	0	8	0	y	1.00	8	0	8	0	y	1.00	9	0	9	0	y	1.00	6	0	6	0	y	1.00	15	0	15	0	y	ENSMUSG00000031584.17	Gsr	chr8	protein_coding	glutathione reductase
novel_NIR_18882	chr8	34143957	34159181	+	34142598	34159181	A5SS	ENSMUST00000154745.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031584.17	Gsr	chr8	protein_coding	glutathione reductase
novel_NIR_18883	chr8	34143957	34159181	+	34159062	34159181	5pMXE	ENSMUST00000149528.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031584.17	Gsr	chr8	protein_coding	glutathione reductase
novel_NIR_18884	chr8	34222702	34225762	+	34222016	34225762	A5SS	ENSMUST00000170705.8	novel	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	7	0	7	0	y	0.50	1	1	1	1	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	ENSMUSG00000031585.14	Gtf2e2	chr8	protein_coding	general transcription factor II E, polypeptide 2 (beta subunit)
novel_NIR_18885	chr8	34222702	34225762	+	34222157	34225762	A5SS	ENSMUST00000167264.8	novel	0.00	0	9	0	9	n	0.08	1	11	1	11	n	0.25	7	21	7	21	y	0.07	1	14	1	14	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.07	1	14	1	14	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.06	1	17	1	17	n	ENSMUSG00000031585.14	Gtf2e2	chr8	protein_coding	general transcription factor II E, polypeptide 2 (beta subunit)
novel_NIR_18886	chr8	34222702	34225762	+	34222543	34225762	A5SS	ENSMUST00000187392.7	novel	-	-	-	-	-	-	0.20	1	4	1	4	n	1.00	7	0	7	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	ENSMUSG00000031585.14	Gtf2e2	chr8	protein_coding	general transcription factor II E, polypeptide 2 (beta subunit)
novel_NIR_18887	chr8	34222702	34225762	+	34222662	34225762	A5SS	ENSMUST00000190675.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.78	7	2	7	2	y	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	1	2	1	2	n	ENSMUSG00000031585.14	Gtf2e2	chr8	protein_coding	general transcription factor II E, polypeptide 2 (beta subunit)
novel_NIR_18888	chr8	34222702	34225762	+	34223556	34225762	5pMXE	ENSMUST00000190639.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	7	0	7	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000031585.14	Gtf2e2	chr8	protein_coding	general transcription factor II E, polypeptide 2 (beta subunit)
novel_NIR_18889	chr8	34285178	34286898	-	34285178	34286902	A5SS	ENSMUST00000183336.8	novel	0.00	0	1	0	1	n	0.25	2	6	2	6	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.33	2	4	2	4	y	0.17	1	5	1	5	n	0.00	0	7	0	7	n	0.57	4	3	4	3	y	0.11	1	8	1	8	n	0.25	1	3	1	3	n	-	-	-	-	-	-	ENSMUSG00000031586.18	Rbpms	chr8	protein_coding	RNA binding protein gene with multiple splicing
novel_NIR_18890	chr8	34285178	34286898	-	34285178	34324332	A5SS	ENSMUST00000033994.15	novel	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.25	1	3	1	3	n	1.00	2	0	2	0	y	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	ENSMUSG00000031586.18	Rbpms	chr8	protein_coding	RNA binding protein gene with multiple splicing
novel_NIR_18891	chr8	34285178	34353014	-	34285178	34286902	5pMXE	ENSMUST00000183122.2	novel	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000031586.18	Rbpms	chr8	protein_coding	RNA binding protein gene with multiple splicing
novel_NIR_18892	chr8	34324482	34354361	-	34324482	34333501	5pMXE	ENSMUST00000183062.2	novel	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031586.18	Rbpms	chr8	protein_coding	RNA binding protein gene with multiple splicing
novel_NIR_18893	chr8	34324482	34354361	-	34324482	34334647	5pMXE	ENSMUST00000182256.8	novel	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031586.18	Rbpms	chr8	protein_coding	RNA binding protein gene with multiple splicing
novel_NIR_18894	chr8	34324482	34354361	-	34324482	34343638	5pMXE	ENSMUST00000182184.8	novel	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031586.18	Rbpms	chr8	protein_coding	RNA binding protein gene with multiple splicing
novel_NIR_18895	chr8	34356432	34360406	-	34356432	34379637	A5SS	ENSMUST00000183088.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031586.18	Rbpms	chr8	protein_coding	RNA binding protein gene with multiple splicing
novel_NIR_18896	chr8	34356432	34360406	-	34356432	34381635	A5SS	ENSMUST00000182871.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031586.18	Rbpms	chr8	protein_coding	RNA binding protein gene with multiple splicing
novel_NIR_18897	chr8	34356432	34360406	-	34356432	34419203	A5SS	ENSMUST00000231786.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031586.18	Rbpms	chr8	protein_coding	RNA binding protein gene with multiple splicing
novel_NIR_18898	chr8	34356432	34385466	-	34356432	34379637	5pMXE	ENSMUST00000183088.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000031586.18	Rbpms	chr8	protein_coding	RNA binding protein gene with multiple splicing
novel_NIR_18899	chr8	34356432	34385466	-	34356432	34381635	5pMXE	ENSMUST00000182871.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000031586.18	Rbpms	chr8	protein_coding	RNA binding protein gene with multiple splicing
novel_NIR_18900	chr8	34356432	34385466	-	34356432	34419203	A5SS	ENSMUST00000231786.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000031586.18	Rbpms	chr8	protein_coding	RNA binding protein gene with multiple splicing
novel_NIR_18901	chr8	34356432	34393814	-	34356432	34379637	5pMXE	ENSMUST00000183088.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000031586.18	Rbpms	chr8	protein_coding	RNA binding protein gene with multiple splicing
novel_NIR_18902	chr8	34356432	34393814	-	34356432	34381635	5pMXE	ENSMUST00000182871.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000031586.18	Rbpms	chr8	protein_coding	RNA binding protein gene with multiple splicing
novel_NIR_18903	chr8	34356432	34393814	-	34356432	34419203	A5SS	ENSMUST00000231786.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000031586.18	Rbpms	chr8	protein_coding	RNA binding protein gene with multiple splicing
novel_NIR_18904	chr8	34356432	34411776	-	34356432	34379637	5pMXE	ENSMUST00000183088.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031586.18	Rbpms	chr8	protein_coding	RNA binding protein gene with multiple splicing
novel_NIR_18905	chr8	34356432	34411776	-	34356432	34381635	5pMXE	ENSMUST00000182871.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031586.18	Rbpms	chr8	protein_coding	RNA binding protein gene with multiple splicing
novel_NIR_18906	chr8	34356432	34411776	-	34356432	34419203	A5SS	ENSMUST00000231786.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031586.18	Rbpms	chr8	protein_coding	RNA binding protein gene with multiple splicing
novel_NIR_18907	chr8	34356432	34413726	-	34356432	34379637	5pMXE	ENSMUST00000183088.2	novel	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000031586.18	Rbpms	chr8	protein_coding	RNA binding protein gene with multiple splicing
novel_NIR_18908	chr8	34356432	34413726	-	34356432	34381635	5pMXE	ENSMUST00000182871.2	novel	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000031586.18	Rbpms	chr8	protein_coding	RNA binding protein gene with multiple splicing
novel_NIR_18909	chr8	34356432	34413726	-	34356432	34419203	A5SS	ENSMUST00000231786.2	novel	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000031586.18	Rbpms	chr8	protein_coding	RNA binding protein gene with multiple splicing
novel_NIR_18910	chr8	34476006	34478780	+	34476006;34477003	34476897;34478780	ES	ENSMUST00000212322.2	novel	0.92	12	1.0	12	0;2	y	0.60	3	2.0	3	2;2	y	0.00	0	1.0	0	1;1	n	0.82	9	2.0	9	0;4	y	0.40	4	6.0	4	7;5	y	1.00	3	0.0	3	0;0	y	0.75	15	5.0	15	5;5	y	1.00	5	0.0	5	0;0	y	0.53	5	4.5	5	7;2	y	0.69	10	4.5	10	2;7	y	0.67	9	4.5	9	6;3	y	1.00	8	0.0	8	0;0	y	ENSMUSG00000110663.2	Gm39157	chr8	lncRNA	predicted gene, 39157
novel_NIR_18911	chr8	34477726	34478780	+	34477003	34478780	A5SS	ENSMUST00000212322.2	novel	0.71	5	2	5	2	y	0.00	0	2	0	2	n	0.93	13	1	13	1	y	0.33	2	4	2	4	y	0.55	6	5	6	5	y	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	1.00	7	0	7	0	y	ENSMUSG00000110663.2	Gm39157	chr8	lncRNA	predicted gene, 39157
novel_NIR_18912	chr8	34564936	34566073	-	34564448	34566073	A3SS	ENSMUST00000131839.8	novel	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.50	1	1	1	1	n	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.00	0	13	0	13	n	0.33	2	4	2	4	y	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000031516.12	Dctn6	chr8	protein_coding	dynactin 6
novel_NIR_18913	chr8	34566255	34566714	-	34566255	34573496	A5SS	ENSMUST00000131839.8	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.67	2	1	2	1	y	0.00	0	3	0	3	n	0.00	0	10	0	10	n	ENSMUSG00000031516.12	Dctn6	chr8	protein_coding	dynactin 6
novel_NIR_18914	chr8	34572219	34573496	-	34566255	34573496	A3SS	ENSMUST00000131839.8	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	ENSMUSG00000031516.12	Dctn6	chr8	protein_coding	dynactin 6
novel_NIR_18915	chr8	34572219	34573496	-	34572193	34573496	A3SS	ENSMUST00000143411.2	novel	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.22	2	7	2	7	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000031516.12	Dctn6	chr8	protein_coding	dynactin 6
novel_NIR_18916	chr8	34572219	34573496	-	34572252	34573496	A3SS	ENSMUST00000117243.8	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.25	2	6	2	6	y	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	4	0	4	n	-	-	-	-	-	-	ENSMUSG00000031516.12	Dctn6	chr8	protein_coding	dynactin 6
novel_NIR_18917	chr8	34621990	34628353	+	34621990	34622174	3pMXE	ENSMUST00000209470.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	9	0	9	0	y	ENSMUSG00000031532.8	Saraf	chr8	protein_coding	store-operated calcium entry-associated regulatory factor
novel_NIR_18918	chr8	3476559	3477349	+	3438418	3477349	A5SS	ENSMUST00000239102.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	4	0	4	0	y	ENSMUSG00000004568.14	Arhgef18	chr8	protein_coding	rho/rac guanine nucleotide exchange factor (GEF) 18
novel_NIR_18919	chr8	3476559	3477349	+	3443102	3477349	A5SS	ENSMUST00000131773.8	novel	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	16	0	16	n	0.17	2	10	2	10	y	0.00	0	34	0	34	n	0.00	0	14	0	14	n	0.00	0	18	0	18	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	19	0	19	n	0.10	1	9	1	9	n	0.18	4	18	4	18	n	ENSMUSG00000004568.14	Arhgef18	chr8	protein_coding	rho/rac guanine nucleotide exchange factor (GEF) 18
novel_NIR_18920	chr8	3476559	3477349	+	3443224	3477349	A5SS	ENSMUST00000145394.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	ENSMUSG00000004568.14	Arhgef18	chr8	protein_coding	rho/rac guanine nucleotide exchange factor (GEF) 18
novel_NIR_18921	chr8	34890073	34895527	-	34889138	34895527	A3SS	ENSMUST00000210285.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000110369.2	Gm45349	chr8	lncRNA	predicted gene 45349
novel_NIR_18922	chr8	34897441	34903925	-	34897441	34930200	A5SS	ENSMUST00000210285.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000110369.2	Gm45349	chr8	lncRNA	predicted gene 45349
novel_NIR_18923	chr8	3509434	3513922	-	3513746	3513922	3pMXE	ENSMUST00000118194.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.43	3	4	3	4	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	ENSMUSG00000069633.13	Pex11g	chr8	protein_coding	peroxisomal biogenesis factor 11 gamma
novel_NIR_18924	chr8	3565690	3566681	+	3565465	3566681	A5SS	ENSMUST00000208310.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000004565.16	Pnpla6	chr8	protein_coding	patatin-like phospholipase domain containing 6
novel_NIR_18925	chr8	3565690	3566681	+	3565556	3566681	A5SS	ENSMUST00000004681.14	novel	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.07	1	13	1	13	n	0.00	0	13	0	13	n	0.09	1	10	1	10	n	0.00	0	1	0	1	n	0.29	2	5	2	5	y	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.12	1	7	1	7	n	ENSMUSG00000004565.16	Pnpla6	chr8	protein_coding	patatin-like phospholipase domain containing 6
novel_NIR_18926	chr8	3565690	3566681	+	3565690;3566568	3566507;3566681	ES	ENSMUST00000208762.2	novel	0.20	1	4.0	1	0;8	n	0.00	0	2.0	0	0;4	n	0.14	1	6.0	1	0;12	n	0.00	0	7.0	0	0;14	n	0.12	1	7.5	1	0;15	n	0.00	0	2.5	0	0;5	n	0.21	2	7.5	2	1;14	y	0.00	0	8.0	0	2;14	n	0.00	0	4.0	0	1;7	n	0.12	1	7.5	1	2;13	n	0.00	0	3.5	0	0;7	n	0.08	1	12.0	1	1;23	n	ENSMUSG00000004565.16	Pnpla6	chr8	protein_coding	patatin-like phospholipase domain containing 6
novel_NIR_18927	chr8	35843095	35843721	+	35842959	35843721	A5SS	ENSMUST00000211648.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000046794.10	Ppp1r3b	chr8	protein_coding	protein phosphatase 1, regulatory subunit 3B
novel_NIR_18928	chr8	3587692	3587767	+	3587520	3587767	A5SS	ENSMUST00000207421.2	novel	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.67	4	2	4	2	y	0.00	0	2	0	2	n	0.71	5	2	5	2	y	0.33	2	4	2	4	y	-	-	-	-	-	-	1.00	4	0	4	0	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000004565.16	Pnpla6	chr8	protein_coding	patatin-like phospholipase domain containing 6
novel_NIR_18929	chr8	36051669	36055992	-	36051766	36055992	A3SS	ENSMUST00000181322.3	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	2	0	2	0	y	ENSMUSG00000097357.3	Gm16793	chr8	lncRNA	predicted gene, 16793
novel_NIR_18930	chr8	3618096	3627841	+	3618096	3623121	3pMXE	ENSMUST00000138454.2	novel	0.25	1	3	1	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	12	0	12	n	-	-	-	-	-	-	0.43	3	4	3	4	y	0.00	0	2	0	2	n	0.31	5	11	5	11	y	0.00	0	3	0	3	n	0.12	1	7	1	7	n	0.00	0	7	0	7	n	ENSMUSG00000065952.14	Rps23rg1	chr8	protein_coding	ribosomal protein S23, retrogene 1
novel_NIR_18931	chr8	3618096	3627841	+	3618096;3623221	3623121;3627841	ES	ENSMUST00000153341.8	novel	0.18	1	4.5	1	3;6	n	0.00	0	1.5	0	3;0	n	-	-	-	-	-	-	0.00	0	2.5	0	2;3	n	0.00	0	10.0	0	12;8	n	-	-	-	-	-	-	0.40	3	4.5	3	4;5	y	0.00	0	1.5	0	2;1	n	0.32	5	10.5	5	11;10	y	0.00	0	6.0	0	3;9	n	0.13	1	6.5	1	7;6	n	0.00	0	7.0	0	7;7	n	ENSMUSG00000065952.14	Rps23rg1	chr8	protein_coding	ribosomal protein S23, retrogene 1
novel_NIR_18932	chr8	3653501	3653657	+	3653501	3653606	A3SS	ENSMUST00000057028.15	novel	0.00	0	16	0	16	n	0.19	3	13	3	13	y	0.00	0	31	0	31	n	0.00	0	17	0	17	n	0.00	0	29	0	29	n	0.14	1	6	1	6	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	20	0	20	n	0.04	1	23	1	23	n	0.00	0	21	0	21	n	0.00	0	23	0	23	n	ENSMUSG00000044433.17	Camsap3	chr8	protein_coding	calmodulin regulated spectrin-associated protein family, member 3
novel_NIR_18933	chr8	3653501	3653657	+	3653501	3654854	A3SS	ENSMUST00000207712.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000044433.17	Camsap3	chr8	protein_coding	calmodulin regulated spectrin-associated protein family, member 3
novel_NIR_18934	chr8	3668666	3671228	-	3668666;3669093	3668859;3671228	ES	ENSMUST00000159235.2	novel	0.00	0	9.5	0	1;18	n	0.00	0	11.0	0	0;22	n	0.00	0	6.5	0	0;13	n	0.26	3	8.5	3	0;17	y	0.00	0	14.5	0	1;28	n	0.00	0	4.0	0	0;8	n	0.00	0	12.0	0	0;24	n	0.00	0	3.5	0	0;7	n	0.00	0	5.5	0	0;11	n	0.09	1	10.5	1	0;21	n	0.00	0	7.5	0	0;15	n	0.00	0	12.5	0	0;25	n	ENSMUSG00000019470.13	Xab2	chr8	protein_coding	XPA binding protein 2
novel_NIR_18935	chr8	3668666	3671228	-	3668666;3669093	3668945;3671228	ES	ENSMUST00000163038.8	novel	0.00	0	21.5	0	25;18	n	0.00	0	19.5	0	17;22	n	0.00	0	15.5	0	18;13	n	0.15	3	17.0	3	17;17	y	0.00	0	31.5	0	35;28	n	0.00	0	10.0	0	12;8	n	0.00	0	22.0	0	20;24	n	0.00	0	10.5	0	14;7	n	0.00	0	14.0	0	17;11	n	0.05	1	20.5	1	20;21	n	0.00	0	16.5	0	18;15	n	0.00	0	23.5	0	22;25	n	ENSMUSG00000019470.13	Xab2	chr8	protein_coding	XPA binding protein 2
novel_NIR_18936	chr8	3671615	3672342	+	3671695	3672342	A5SS	ENSMUST00000207389.2	novel	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.67	2	1	2	1	y	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000087687.4	Pet100	chr8	protein_coding	PET100 homolog
novel_NIR_18937	chr8	3671679	3672342	+	3671695	3672342	A5SS	ENSMUST00000207389.2	novel	0.00	0	4	0	4	n	0.62	5	3	5	3	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.00	0	7	0	7	n	0.50	3	3	3	3	y	0.00	0	1	0	1	n	ENSMUSG00000087687.4	Pet100	chr8	protein_coding	PET100 homolog
novel_NIR_18938	chr8	3684123	3684533	+	3684123	3685446	A3SS	ENSMUST00000163044.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000004626.15	Stxbp2	chr8	protein_coding	syntaxin binding protein 2
novel_NIR_18939	chr8	3689617	3690549	+	3689617	3690749	A3SS	ENSMUST00000160435.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000004626.15	Stxbp2	chr8	protein_coding	syntaxin binding protein 2
novel_NIR_18940	chr8	3689617	3690549	+	3689617	3691735	A3SS	ENSMUST00000159370.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000004626.15	Stxbp2	chr8	protein_coding	syntaxin binding protein 2
novel_NIR_18941	chr8	3689617	3691040	+	3689617	3690749	3pMXE	ENSMUST00000160435.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000004626.15	Stxbp2	chr8	protein_coding	syntaxin binding protein 2
novel_NIR_18942	chr8	3689617	3691040	+	3689617	3691735	A3SS	ENSMUST00000159370.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000004626.15	Stxbp2	chr8	protein_coding	syntaxin binding protein 2
novel_NIR_18943	chr8	36972815	36978727	+	36972879	36978727	A5SS	ENSMUST00000147525.9	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.33	1	2	1	2	n	ENSMUSG00000039620.18	Trmt9b	chr8	protein_coding	tRNA methyltransferase 9B
novel_NIR_18944	chr8	36972815	36978727	+	36975566	36978727	A5SS&ES	ENSMUST00000135373.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000039620.18	Trmt9b	chr8	protein_coding	tRNA methyltransferase 9B
novel_NIR_18945	chr8	36972815	36978727	+	36977478	36978727	A5SS&ES	ENSMUST00000152039.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000039620.18	Trmt9b	chr8	protein_coding	tRNA methyltransferase 9B
novel_NIR_18946	chr8	39538670	39539347	+	39538670	39593683	A3SS	ENSMUST00000239510.1	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	7	0	7	n	ENSMUSG00000118664.1	Tusc3	chr8	protein_coding	--
novel_NIR_18947	chr8	39538670	39561768	+	39538670	39593683	A3SS	ENSMUST00000239510.1	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	7	0	7	n	ENSMUSG00000118664.1	Tusc3	chr8	protein_coding	--
novel_NIR_18948	chr8	40077122	40084322	-	40077122;40080795	40080740;40084322	ES	ENSMUST00000210525.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1.0	0	0;2	n	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025044.17	Msr1	chr8	protein_coding	macrophage scavenger receptor 1
novel_NIR_18949	chr8	40761451	40773488	+	40761451	40788851	A3SS	ENSMUST00000068999.14	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.67	2	1	2	1	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000039478.16	Micu3	chr8	protein_coding	mitochondrial calcium uptake family, member 3
novel_NIR_18950	chr8	40947156	40948737	-	40947156	40952336	A5SS	ENSMUST00000135269.8	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.60	3	2	3	2	y	0.50	1	1	1	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	ENSMUSG00000031601.17	Cnot7	chr8	protein_coding	CCR4-NOT transcription complex, subunit 7
novel_NIR_18951	chr8	40953954	40954233	-	40953954	40960496	A5SS	ENSMUST00000034012.10	novel	0.35	15	28	15	28	y	0.39	11	17	11	17	y	0.11	9	74	9	74	n	0.21	12	45	12	45	n	0.19	13	56	13	56	n	0.00	0	22	0	22	n	0.24	15	48	15	48	y	0.38	13	21	13	21	y	0.22	7	25	7	25	y	0.20	10	41	10	41	y	0.33	15	31	15	31	n	0.30	20	46	20	46	n	ENSMUSG00000031601.17	Cnot7	chr8	protein_coding	CCR4-NOT transcription complex, subunit 7
novel_NIR_18952	chr8	40953954;40955368	40955330;40960496	-	40953954	40960496	cassetteExon	ENSMUST00000034012.10	novel	0.08	2.5	28	1;4	28	n	0.13	2.5	17	2;3	17	n	0.03	2.0	74	0;4	74	n	0.07	3.5	45	1;6	45	n	0.10	6.0	56	6;6	56	n	0.08	2.0	22	1;3	22	n	0.09	4.5	48	2;7	48	n	0.05	1.0	21	0;2	21	n	0.12	3.5	25	2;5	25	n	0.02	1.0	41	0;2	41	n	0.13	4.5	31	3;6	31	n	0.16	8.5	46	8;9	46	y	ENSMUSG00000031601.17	Cnot7	chr8	protein_coding	CCR4-NOT transcription complex, subunit 7
novel_NIR_18953	chr8	40963267	40964905	-	40963267	40965733	A5SS	ENSMUST00000128237.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000031601.17	Cnot7	chr8	protein_coding	CCR4-NOT transcription complex, subunit 7
novel_NIR_18954	chr8	40963267	40964905	-	40963267	40968745	A5SS	ENSMUST00000132032.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000031601.17	Cnot7	chr8	protein_coding	CCR4-NOT transcription complex, subunit 7
novel_NIR_18955	chr8	41017110	41025749	-	41017110	41034456	A5SS	ENSMUST00000048890.17	novel	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.75	6	2	6	2	y	1.00	4	0	4	0	y	0.00	0	1	0	1	n	0.50	2	2	2	2	y	1.00	1	0	1	0	n	0.86	6	1	6	1	y	0.83	5	1	5	1	y	1.00	2	0	2	0	y	0.25	2	6	2	6	y	ENSMUSG00000039431.17	Mtmr7	chr8	protein_coding	myotubularin related protein 7
novel_NIR_18956	chr8	41316295	41351974	+	41316087	41351974	A5SS	ENSMUST00000141505.2	novel	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.50	4	4	4	4	y	0.12	1	7	1	7	n	1.00	1	0	1	0	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.15	2	11	2	11	y	ENSMUSG00000031596.16	Slc7a2	chr8	protein_coding	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2
novel_NIR_18957	chr8	41316295	41351974	+	41328081	41351974	5pMXE	ENSMUST00000117077.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000031596.16	Slc7a2	chr8	protein_coding	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2
novel_NIR_18958	chr8	41321818	41351974	+	41316087	41351974	A5SS	ENSMUST00000141505.2	novel	0.57	4	3	4	3	y	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.27	4	11	4	11	y	ENSMUSG00000031596.16	Slc7a2	chr8	protein_coding	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2
novel_NIR_18959	chr8	41321818	41351974	+	41328081	41351974	5pMXE	ENSMUST00000117077.8	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000031596.16	Slc7a2	chr8	protein_coding	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2
novel_NIR_18960	chr8	41334720	41351974	+	41316087	41351974	A5SS	ENSMUST00000141505.2	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.12	1	7	1	7	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	11	0	11	n	ENSMUSG00000031596.16	Slc7a2	chr8	protein_coding	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2
novel_NIR_18961	chr8	41334720	41351974	+	41328081	41351974	A5SS	ENSMUST00000117077.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031596.16	Slc7a2	chr8	protein_coding	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2
novel_NIR_18962	chr8	41345232	41351974	+	41316087	41351974	A5SS	ENSMUST00000141505.2	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	11	0	11	n	ENSMUSG00000031596.16	Slc7a2	chr8	protein_coding	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2
novel_NIR_18963	chr8	41345232	41351974	+	41328081	41351974	A5SS	ENSMUST00000117077.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031596.16	Slc7a2	chr8	protein_coding	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2
novel_NIR_18964	chr8	41345346	41351974	+	41316087	41351974	A5SS	ENSMUST00000141505.2	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.73	19	7	19	7	y	0.50	2	2	2	2	y	0.79	15	4	15	4	y	0.65	13	7	13	7	y	1.00	6	0	6	0	y	0.82	14	3	14	3	y	0.40	2	3	2	3	y	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	11	0	11	n	ENSMUSG00000031596.16	Slc7a2	chr8	protein_coding	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2
novel_NIR_18965	chr8	41345346	41351974	+	41328081	41351974	A5SS	ENSMUST00000117077.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	19	0	19	0	y	1.00	2	0	2	0	y	1.00	15	0	15	0	y	1.00	13	0	13	0	y	1.00	6	0	6	0	y	1.00	14	0	14	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000031596.16	Slc7a2	chr8	protein_coding	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2
novel_NIR_18966	chr8	41350017	41351974	+	41316087	41351974	A5SS	ENSMUST00000141505.2	novel	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	11	0	11	n	ENSMUSG00000031596.16	Slc7a2	chr8	protein_coding	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2
novel_NIR_18967	chr8	41350017	41351974	+	41328081	41351974	A5SS	ENSMUST00000117077.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031596.16	Slc7a2	chr8	protein_coding	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2
novel_NIR_18968	chr8	41358764	41364032	+	41358764;41361232	41361093;41364032	ES	ENSMUST00000098816.10	novel	-	-	-	-	-	-	0.00	0	1.0	0	2;0	n	0.00	0	2.0	0	2;2	n	0.00	0	2.0	0	4;0	n	0.00	0	1.5	0	3;0	n	0.00	0	2.0	0	2;2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1.0	0	2;0	n	0.62	4	2.5	4	5;0	y	0.00	0	1.0	0	2;0	n	0.42	4	5.5	4	9;2	y	ENSMUSG00000031596.16	Slc7a2	chr8	protein_coding	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2
novel_NIR_18969	chr8	41361232	41361435	+	41361232	41364032	A3SS	ENSMUST00000098816.10	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.33	1	2	1	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	ENSMUSG00000031596.16	Slc7a2	chr8	protein_coding	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2
novel_NIR_18970	chr8	41468752	41469723	-	41468491	41469723	A3SS	ENSMUST00000155626.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045636.17	Mtus1	chr8	protein_coding	mitochondrial tumor suppressor 1
novel_NIR_18971	chr8	41475631	41529269	-	41475631	41492322	5pMXE	ENSMUST00000155174.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000045636.17	Mtus1	chr8	protein_coding	mitochondrial tumor suppressor 1
novel_NIR_18972	chr8	41475631	41529269	-	41475631	41494510	5pMXE	ENSMUST00000051379.14	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.50	3	3	3	3	y	0.25	2	6	2	6	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.50	1	1	1	1	n	0.44	4	5	4	5	y	0.00	0	3	0	3	n	0.67	4	2	4	2	y	ENSMUSG00000045636.17	Mtus1	chr8	protein_coding	mitochondrial tumor suppressor 1
novel_NIR_18973	chr8	41503153	41586518	-	41503153	41507559	5pMXE	ENSMUST00000093534.11	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000045636.17	Mtus1	chr8	protein_coding	mitochondrial tumor suppressor 1
novel_NIR_18974	chr8	41537877	41554744	-	41537877	41567577	A5SS	ENSMUST00000118835.8	novel	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000045636.17	Mtus1	chr8	protein_coding	mitochondrial tumor suppressor 1
novel_NIR_18975	chr8	41537877	41554744	-	41537877	41586698	A5SS	ENSMUST00000155055.2	novel	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.20	1	4	1	4	n	0.29	2	5	2	5	y	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	ENSMUSG00000045636.17	Mtus1	chr8	protein_coding	mitochondrial tumor suppressor 1
novel_NIR_18976	chr8	41537877	41582352	-	41537877	41567577	5pMXE	ENSMUST00000118835.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000045636.17	Mtus1	chr8	protein_coding	mitochondrial tumor suppressor 1
novel_NIR_18977	chr8	41537877	41582352	-	41537877	41586698	A5SS	ENSMUST00000155055.2	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	ENSMUSG00000045636.17	Mtus1	chr8	protein_coding	mitochondrial tumor suppressor 1
novel_NIR_18978	chr8	41537877	41586941	-	41537877	41567577	5pMXE	ENSMUST00000118835.8	novel	1.00	2	0	2	0	y	0.00	0	2	0	2	n	1.00	3	0	3	0	y	1.00	9	0	9	0	y	1.00	7	0	7	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000045636.17	Mtus1	chr8	protein_coding	mitochondrial tumor suppressor 1
novel_NIR_18979	chr8	41537877	41586941	-	41537877	41586698	5pMXE	ENSMUST00000155055.2	novel	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.50	3	3	3	3	y	0.69	9	4	9	4	y	0.58	7	5	7	5	y	1.00	3	0	3	0	y	0.33	1	2	1	2	n	0.50	2	2	2	2	y	1.00	4	0	4	0	y	0.71	5	2	5	2	y	-	-	-	-	-	-	0.50	3	3	3	3	y	ENSMUSG00000045636.17	Mtus1	chr8	protein_coding	mitochondrial tumor suppressor 1
novel_NIR_18980	chr8	41537877	41670851	-	41537877	41567577	5pMXE	ENSMUST00000118835.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000045636.17	Mtus1	chr8	protein_coding	mitochondrial tumor suppressor 1
novel_NIR_18981	chr8	41537877	41670851	-	41537877	41586698	5pMXE	ENSMUST00000155055.2	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.00	0	3	0	3	n	ENSMUSG00000045636.17	Mtus1	chr8	protein_coding	mitochondrial tumor suppressor 1
novel_NIR_18982	chr8	41671275	41672064	+	41671275	41672313	A3SS	ENSMUST00000142897.2	novel	0.40	2	3	2	3	y	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	ENSMUSG00000085445.2	Gm16348	chr8	lncRNA	predicted gene 16348
novel_NIR_18983	chr8	41671286	41672313	+	41671275	41672313	A5SS	ENSMUST00000142897.2	novel	0.00	0	3	0	3	n	0.22	2	7	2	7	y	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.25	2	6	2	6	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.30	3	7	3	7	y	0.00	0	3	0	3	n	0.12	1	7	1	7	n	ENSMUSG00000085445.2	Gm16348	chr8	lncRNA	predicted gene 16348
novel_NIR_18984	chr8	41672862	41709033	+	41693000	41709033	5pMXE	ENSMUST00000211090.2	novel	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000031592.11	Pcm1	chr8	protein_coding	pericentriolar material 1
novel_NIR_18985	chr8	41672981	41709033	+	41693000	41709033	5pMXE	ENSMUST00000211090.2	novel	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.67	8	4	8	4	y	0.00	0	1	0	1	n	0.53	9	8	9	8	y	0.80	8	2	8	2	y	-	-	-	-	-	-	0.38	3	5	3	5	y	1.00	2	0	2	0	y	0.60	3	2	3	2	y	0.00	0	1	0	1	n	0.83	5	1	5	1	y	ENSMUSG00000031592.11	Pcm1	chr8	protein_coding	pericentriolar material 1
novel_NIR_18986	chr8	41714513	41715499	+	41714513	41720224	A3SS	ENSMUST00000211090.2	novel	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.16	4	21	4	21	y	0.00	0	5	0	5	n	0.00	0	18	0	18	n	0.14	1	6	1	6	n	0.07	1	14	1	14	n	0.00	0	5	0	5	n	0.50	2	2	2	2	y	0.10	1	9	1	9	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	ENSMUSG00000031592.11	Pcm1	chr8	protein_coding	pericentriolar material 1
novel_NIR_18987	chr8	41727335	41728690	+	41727335;41728205	41728032;41728690	ES	ENSMUST00000045218.9	novel	0.00	0	7.5	0	3;12	n	0.00	0	7.0	0	7;7	n	0.00	0	24.0	0	27;21	n	0.00	0	12.0	0	9;15	n	0.04	1	22.5	1	26;19	n	0.00	0	8.0	0	9;7	n	0.00	0	17.5	0	20;15	n	0.00	0	13.0	0	15;11	n	0.00	0	12.5	0	10;15	n	0.08	1	11.0	1	12;10	n	0.33	1	2.0	1	4;0	n	0.19	2	8.5	2	6;11	y	ENSMUSG00000031592.11	Pcm1	chr8	protein_coding	pericentriolar material 1
novel_NIR_18988	chr8	41746853	41762557	+	41746853;41757188	41757024;41762557	ES	ENSMUST00000045218.9	novel	0.00	0	13.0	0	8;18	n	0.16	2	10.5	2	11;10	y	0.00	0	29.0	0	23;35	n	0.00	0	13.5	0	16;11	n	0.07	2	26.5	2	30;23	n	0.00	0	17.0	0	23;11	n	0.16	3	15.5	3	15;16	y	0.13	2	13.0	2	13;13	n	0.18	3	14.0	3	11;17	y	0.00	0	15.5	0	10;21	n	0.06	1	14.5	1	15;14	n	0.00	0	12.0	0	12;12	n	ENSMUSG00000031592.11	Pcm1	chr8	protein_coding	pericentriolar material 1
novel_NIR_18989	chr8	41766497	41766952	+	41766497	41766882	A3SS	ENSMUST00000045218.9	novel	0.17	4	20	4	20	y	0.00	0	29	0	29	n	0.03	2	71	2	71	n	0.00	0	42	0	42	n	0.02	1	51	1	51	n	0.03	1	35	1	35	n	0.03	2	65	2	65	n	0.00	0	22	0	22	n	0.04	1	24	1	24	n	0.00	0	42	0	42	n	0.00	0	29	0	29	n	0.00	0	29	0	29	n	ENSMUSG00000031592.11	Pcm1	chr8	protein_coding	pericentriolar material 1
novel_NIR_18990	chr8	41807954	41827547	-	41807954	41827543	A5SS	ENSMUST00000143057.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000031591.15	Asah1	chr8	protein_coding	N-acylsphingosine amidohydrolase 1
novel_NIR_18991	chr8	41864385	41869937	-	41864385	41865326	5pMXE	ENSMUST00000210873.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031590.9	Frg1	chr8	protein_coding	FSHD region gene 1
novel_NIR_18992	chr8	4216763	4233492	+	4216763	4233488	A3SS	ENSMUST00000177499.8	novel	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.20	1	4	1	4	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.07	1	14	1	14	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	ENSMUSG00000011832.17	Evi5l	chr8	protein_coding	ecotropic viral integration site 5 like
novel_NIR_18993	chr8	4251358	4252936	+	4250921	4252936	A5SS	ENSMUST00000176764.9	novel	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.29	2	5	2	5	y	ENSMUSG00000011832.17	Evi5l	chr8	protein_coding	ecotropic viral integration site 5 like
novel_NIR_18994	chr8	4251358	4252936	+	4251966	4252936	A5SS&ES	ENSMUST00000176149.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000011832.17	Evi5l	chr8	protein_coding	ecotropic viral integration site 5 like
novel_NIR_18995	chr8	4300921	4301055	+	4300921	4301293	A3SS	ENSMUST00000110993.2	novel	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.33	2	4	2	4	y	ENSMUSG00000089736.3	Tgfbr3l	chr8	protein_coding	transforming growth factor, beta receptor III-like
novel_NIR_18996	chr8	4372832	4374886	-	4361786	4374886	A3SS	ENSMUST00000098950.6	novel	0.25	3	9	3	9	y	0.00	0	17	0	17	n	0.03	1	37	1	37	n	0.04	1	25	1	25	n	0.04	2	52	2	52	n	0.00	0	20	0	20	n	0.03	1	29	1	29	n	0.00	0	21	0	21	n	0.00	0	16	0	16	n	0.00	0	26	0	26	n	0.00	0	19	0	19	n	0.00	0	28	0	28	n	ENSMUSG00000040028.11	Elavl1	chr8	protein_coding	ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R)
novel_NIR_18997	chr8	4377850	4397793	+	4377850	4399772	A3SS	ENSMUST00000136191.8	novel	0.50	1	1	1	1	n	0.50	3	3	3	3	y	0.33	1	2	1	2	n	0.09	1	10	1	10	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	7	0	7	n	0.40	2	3	2	3	y	0.00	0	6	0	6	n	ENSMUSG00000023235.15	Ccl25	chr8	protein_coding	chemokine (C-C motif) ligand 25
novel_NIR_18998	chr8	45391365	45403233	+	45388658	45403233	A5SS	ENSMUST00000191428.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000070047.15	Fat1	chr8	protein_coding	FAT atypical cadherin 1
novel_NIR_18999	chr8	45391485	45403233	+	45388658	45403233	A5SS	ENSMUST00000191428.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000070047.15	Fat1	chr8	protein_coding	FAT atypical cadherin 1
novel_NIR_19000	chr8	45410382	45441968	+	45406518	45441968	A5SS	ENSMUST00000191428.7	novel	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.06	1	16	1	16	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.75	3	1	3	1	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	ENSMUSG00000070047.15	Fat1	chr8	protein_coding	FAT atypical cadherin 1
novel_NIR_19001	chr8	45706170	45708241	-	45706165	45708241	A3SS	ENSMUST00000034064.5	novel	0.15	14	77	14	77	y	0.17	9	45	9	45	y	0.23	79	265	79	265	y	0.16	22	115	22	115	y	0.12	27	190	27	190	n	0.26	89	260	89	260	y	0.20	29	117	29	117	y	0.15	47	274	47	274	y	0.21	14	53	14	53	y	0.21	29	108	29	108	y	0.20	14	57	14	57	y	0.20	17	70	17	70	y	ENSMUSG00000031645.5	F11	chr8	protein_coding	coagulation factor XI
novel_NIR_19002	chr8	45708403	45709513	-	45708403	45714979	A5SS	ENSMUST00000210622.2	novel	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	18	0	18	n	0.00	0	9	0	9	n	0.05	1	19	1	19	n	0.20	3	12	3	12	y	0.00	0	13	0	13	n	0.00	0	19	0	19	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	ENSMUSG00000031645.5	F11	chr8	protein_coding	coagulation factor XI
novel_NIR_19003	chr8	4571417	4573354	+	4570308	4573354	A5SS	ENSMUST00000176130.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000008206.17	Cers4	chr8	protein_coding	ceramide synthase 4
novel_NIR_19004	chr8	4571417	4573354	+	4571280	4573354	A5SS	ENSMUST00000008350.16	novel	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.00	0	7	0	7	n	0.00	0	4	0	4	n	ENSMUSG00000008206.17	Cers4	chr8	protein_coding	ceramide synthase 4
novel_NIR_19005	chr8	45748089	45759920	-	45748069	45759920	A3SS	ENSMUST00000116473.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000031640.12	Gm45753	chr8	protein_coding	predicted gene 45753
novel_NIR_19006	chr8	45758260	45759920	-	45748069	45759920	A3SS	ENSMUST00000116473.5	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	ENSMUSG00000031640.12	Gm45753	chr8	protein_coding	predicted gene 45753
novel_NIR_19007	chr8	45802195	45803438	-	45802178	45803438	A3SS	ENSMUST00000135912.8	novel	0.08	2	22	2	22	n	0.00	0	23	0	23	n	0.06	1	17	1	17	n	0.00	0	33	0	33	n	0.05	2	42	2	42	n	0.00	0	16	0	16	n	0.00	0	41	0	41	n	0.33	5	10	5	10	y	0.06	2	30	2	30	n	0.09	4	39	4	39	n	0.06	3	45	3	45	n	0.03	1	36	1	36	n	ENSMUSG00000070044.16	Fam149a	chr8	protein_coding	family with sequence similarity 149, member A
novel_NIR_19008	chr8	45863027	45863337	-	45863015	45863337	A3SS	ENSMUST00000209772.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000031639.13	Tlr3	chr8	protein_coding	toll-like receptor 3
novel_NIR_19009	chr8	45863027	45863337	-	45863027	45863490	A5SS	ENSMUST00000034056.12	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000031639.13	Tlr3	chr8	protein_coding	toll-like receptor 3
novel_NIR_19010	chr8	46049453	46083607	-	46049453	46049726	5pMXE	ENSMUST00000142008.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000084954.3	Gm16351	chr8	lncRNA	predicted gene 16351
novel_NIR_19011	chr8	46049453	46083607	-	46049453	46058069	5pMXE	ENSMUST00000209660.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000084954.3	Gm16351	chr8	lncRNA	predicted gene 16351
novel_NIR_19012	chr8	46098889	46106567	+	46098889	46101233	3pMXE	ENSMUST00000127395.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000031626.19	Sorbs2	chr8	protein_coding	sorbin and SH3 domain containing 2
novel_NIR_19013	chr8	46098889	46106567	+	46098889	46111840	A3SS	ENSMUST00000132139.9	novel	0.00	0	5	0	5	n	0.11	1	8	1	8	n	0.03	1	37	1	37	n	0.00	0	11	0	11	n	0.04	1	27	1	27	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.00	0	15	0	15	n	0.23	3	10	3	10	y	0.00	0	22	0	22	n	ENSMUSG00000031626.19	Sorbs2	chr8	protein_coding	sorbin and SH3 domain containing 2
novel_NIR_19014	chr8	46106632	46111840	+	45960994	46111840	A5SS	ENSMUST00000067065.14	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031626.19	Sorbs2	chr8	protein_coding	sorbin and SH3 domain containing 2
novel_NIR_19015	chr8	46106632	46111840	+	46098889	46111840	A5SS	ENSMUST00000132139.9	novel	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	37	0	37	n	0.00	0	11	0	11	n	0.00	0	27	0	27	n	0.17	2	10	2	10	y	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	22	0	22	n	ENSMUSG00000031626.19	Sorbs2	chr8	protein_coding	sorbin and SH3 domain containing 2
novel_NIR_19016	chr8	46106632	46111840	+	46111508	46111840	5pMXE	ENSMUST00000153798.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031626.19	Sorbs2	chr8	protein_coding	sorbin and SH3 domain containing 2
novel_NIR_19017	chr8	46111978	46141335	+	46111978	46147595	A3SS	ENSMUST00000143820.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	n	1.00	2	0	2	0	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.60	3	2	3	2	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	1.00	1	0	1	0	n	ENSMUSG00000031626.19	Sorbs2	chr8	protein_coding	sorbin and SH3 domain containing 2
novel_NIR_19018	chr8	46141484	46145882	+	46141484	46189190	A3SS	ENSMUST00000150102.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031626.19	Sorbs2	chr8	protein_coding	sorbin and SH3 domain containing 2
novel_NIR_19019	chr8	46353596	46368166	+	46353596;46361693	46361506;46368166	ES	ENSMUST00000034053.7	novel	0.00	0	0.5	0	0;1	n	0.00	0	0.5	0	1;0	n	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	0.00	0	2.0	0	2;2	n	-	-	-	-	-	-	0.18	2	9.0	2	3;15	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1.0	0	1;1	n	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	ENSMUSG00000031636.8	Pdlim3	chr8	protein_coding	PDZ and LIM domain 3
novel_NIR_19020	chr8	46362123	46368166	+	46361693	46368166	A5SS	ENSMUST00000034053.7	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.25	5	15	5	15	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031636.8	Pdlim3	chr8	protein_coding	PDZ and LIM domain 3
novel_NIR_19021	chr8	46433676	46436566	+	46433676	46437078	A3SS	ENSMUST00000123307.8	novel	0.20	1	4	1	4	n	0.33	1	2	1	2	n	0.44	4	5	4	5	y	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000031634.14	Ufsp2	chr8	protein_coding	UFM1-specific peptidase 2
novel_NIR_19022	chr8	46606489	46608517	+	46606489	46608815	A3SS	ENSMUST00000147206.2	novel	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.29	2	5	2	5	y	0.00	0	8	0	8	n	ENSMUSG00000086279.2	Gm15634	chr8	lncRNA	predicted gene 15634
novel_NIR_19023	chr8	46617201	46622596	+	46604950	46622596	A5SS	ENSMUST00000154040.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031631.16	Cfap97	chr8	protein_coding	cilia and flagella associated protein 97
novel_NIR_19024	chr8	46617201	46622596	+	46616786	46622596	A5SS	ENSMUST00000034048.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	7	0	7	n	0.60	3	2	3	2	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000031631.16	Cfap97	chr8	protein_coding	cilia and flagella associated protein 97
novel_NIR_19025	chr8	46617201	46622596	+	46616900	46622596	A5SS	ENSMUST00000110376.8	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.43	3	4	3	4	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000031631.16	Cfap97	chr8	protein_coding	cilia and flagella associated protein 97
novel_NIR_19026	chr8	46617201	46622596	+	46617933	46622596	A5SS&ES	ENSMUST00000145080.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.30	3	7	3	7	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000031631.16	Cfap97	chr8	protein_coding	cilia and flagella associated protein 97
novel_NIR_19027	chr8	46827268	46838857	-	46827268	46838898	A5SS	ENSMUST00000210694.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	0.14	1	6	1	6	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000109612.2	Gm45253	chr8	lncRNA	predicted gene 45253
novel_NIR_19028	chr8	46924267	46924875	+	46924267	46924910	A3SS	ENSMUST00000135955.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.40	2	3	2	3	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000018796.14	Acsl1	chr8	protein_coding	acyl-CoA synthetase long-chain family member 1
novel_NIR_19029	chr8	46924267	46924875	+	46924267	46958686	A3SS	ENSMUST00000211644.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.67	2	1	2	1	y	0.50	3	3	3	3	n	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.12	1	7	1	7	n	0.00	0	1	0	1	n	ENSMUSG00000018796.14	Acsl1	chr8	protein_coding	acyl-CoA synthetase long-chain family member 1
novel_NIR_19030	chr8	46924267	46941507	+	46924267	46958686	A3SS	ENSMUST00000211644.2	novel	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.20	2	8	2	8	y	0.11	1	8	1	8	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.11	1	8	1	8	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	ENSMUSG00000018796.14	Acsl1	chr8	protein_coding	acyl-CoA synthetase long-chain family member 1
novel_NIR_19031	chr8	46924267	46945818	+	46924267	46924910	A3SS&ES	ENSMUST00000135955.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000018796.14	Acsl1	chr8	protein_coding	acyl-CoA synthetase long-chain family member 1
novel_NIR_19032	chr8	46924267	46945818	+	46924267	46958686	A3SS	ENSMUST00000211644.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.20	2	8	2	8	y	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	ENSMUSG00000018796.14	Acsl1	chr8	protein_coding	acyl-CoA synthetase long-chain family member 1
novel_NIR_19033	chr8	46972071	46974307	+	46972071	46974447	A3SS	ENSMUST00000110371.8	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.84	32	6	32	6	y	ENSMUSG00000018796.14	Acsl1	chr8	protein_coding	acyl-CoA synthetase long-chain family member 1
novel_NIR_19034	chr8	46974382	46974447	+	46972071	46974447	A5SS	ENSMUST00000110371.8	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.30	3	7	3	7	y	0.10	1	9	1	9	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	ENSMUSG00000018796.14	Acsl1	chr8	protein_coding	acyl-CoA synthetase long-chain family member 1
novel_NIR_19035	chr8	46986673	46987384	+	46945924	46987384	A5SS	ENSMUST00000210929.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	0.00	0	10	0	10	n	-	-	-	-	-	-	1.00	25	0	25	0	y	0.00	0	6	0	6	n	-	-	-	-	-	-	0.87	45	7	45	7	y	0.00	0	7	0	7	n	-	-	-	-	-	-	ENSMUSG00000018796.14	Acsl1	chr8	protein_coding	acyl-CoA synthetase long-chain family member 1
novel_NIR_19036	chr8	47034769	47039378	-	47034685	47039378	A3SS	ENSMUST00000211400.2	novel	0.50	2	2	2	2	y	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.38	3	5	3	5	y	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	20	0	20	n	0.14	1	6	1	6	n	0.00	0	2	0	2	n	0.27	3	8	3	8	y	0.00	0	9	0	9	n	0.14	1	6	1	6	n	ENSMUSG00000038225.16	Primpol	chr8	protein_coding	primase and polymerase (DNA-directed)
novel_NIR_19037	chr8	47043338	47045642	-	47043338	47045628	A5SS	ENSMUST00000211400.2	novel	0.00	0	13	0	13	n	0.33	1	2	1	2	n	0.15	2	11	2	11	y	0.00	0	8	0	8	n	0.10	1	9	1	9	n	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.00	0	2	0	2	n	0.50	4	4	4	4	y	0.27	3	8	3	8	y	0.00	0	5	0	5	n	0.18	2	9	2	9	y	ENSMUSG00000038225.16	Primpol	chr8	protein_coding	primase and polymerase (DNA-directed)
novel_NIR_19038	chr8	47057397	47058120	-	47052901	47058120	A3SS	ENSMUST00000211400.2	novel	0.20	2	8	2	8	y	0.14	1	6	1	6	n	0.00	0	12	0	12	n	0.14	1	6	1	6	n	0.43	3	4	3	4	y	0.14	2	12	2	12	n	0.08	1	12	1	12	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.29	2	5	2	5	y	0.00	0	13	0	13	n	0.00	0	11	0	11	n	ENSMUSG00000038225.16	Primpol	chr8	protein_coding	primase and polymerase (DNA-directed)
novel_NIR_19039	chr8	47058249	47063475	-	47058249;47060936	47060839;47063475	ES	ENSMUST00000211400.2	novel	0.12	1	7.0	1	10;4	n	0.00	0	2.5	0	1;4	n	0.21	2	7.5	2	6;9	y	0.00	0	7.0	0	7;7	n	0.00	0	12.5	0	15;10	n	0.40	1	1.5	1	2;1	n	0.00	0	9.0	0	11;7	n	0.00	0	12.0	0	14;10	n	0.00	0	4.0	0	3;5	n	0.21	2	7.5	2	5;10	y	0.00	0	9.5	0	14;5	n	0.00	0	11.5	0	13;10	n	ENSMUSG00000038225.16	Primpol	chr8	protein_coding	primase and polymerase (DNA-directed)
novel_NIR_19040	chr8	47166977	47189307	-	47131896	47189307	A3SS	ENSMUST00000208508.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000097534.4	Gm16675	chr8	lncRNA	predicted gene, 16675
novel_NIR_19041	chr8	47166977	47189307	-	47184897	47189307	3pMXE	ENSMUST00000181167.3	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	ENSMUSG00000097534.4	Gm16675	chr8	lncRNA	predicted gene, 16675
novel_NIR_19042	chr8	47183064	47189307	-	47131896	47189307	A3SS	ENSMUST00000208508.3	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.75	3	1	3	1	y	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000097534.4	Gm16675	chr8	lncRNA	predicted gene, 16675
novel_NIR_19043	chr8	47183064	47189307	-	47184897	47189307	3pMXE	ENSMUST00000181167.3	novel	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.75	3	1	3	1	y	1.00	5	0	5	0	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.20	1	4	1	4	n	1.00	2	0	2	0	y	ENSMUSG00000097534.4	Gm16675	chr8	lncRNA	predicted gene, 16675
novel_NIR_19044	chr8	47192971	47193099	+	47192971	47259506	A3SS	ENSMUST00000207105.2	novel	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.14	1	6	1	6	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	ENSMUSG00000031627.10	Irf2	chr8	protein_coding	interferon regulatory factor 2
novel_NIR_19045	chr8	47193358	47246528	+	47192831	47246528	A5SS	ENSMUST00000208507.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000031627.10	Irf2	chr8	protein_coding	interferon regulatory factor 2
novel_NIR_19046	chr8	47193358	47246528	+	47193266	47246528	A5SS	ENSMUST00000208433.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031627.10	Irf2	chr8	protein_coding	interferon regulatory factor 2
novel_NIR_19047	chr8	47193358	47246528	+	47193380	47246528	A5SS	ENSMUST00000207571.3	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000031627.10	Irf2	chr8	protein_coding	interferon regulatory factor 2
novel_NIR_19048	chr8	48340186	48353688	-	48340186;48352547	48352471;48353688	ES	ENSMUST00000057561.9	novel	0.00	0	9.5	0	8;11	n	0.00	0	10.5	0	9;12	n	0.00	0	19.5	0	20;19	n	0.00	0	9.5	0	7;12	n	0.00	0	29.0	0	28;30	n	0.00	0	6.5	0	7;6	n	0.00	0	16.5	0	16;17	n	0.00	0	10.5	0	12;9	n	0.00	0	7.0	0	6;8	n	0.00	0	15.5	0	17;14	n	0.00	0	9.0	0	9;9	n	0.19	3	13.0	3	12;14	y	ENSMUSG00000031563.9	Wwc2	chr8	protein_coding	WW, C2 and coiled-coil domain containing 2
novel_NIR_19049	chr8	53972004	53973272	+	53972004	53973280	A3SS	ENSMUST00000211424.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	ENSMUSG00000031521.6	Aga	chr8	protein_coding	aspartylglucosaminidase
novel_NIR_19050	chr8	55232685	55490363	+	55408350	55490363	5pMXE	ENSMUST00000033915.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031517.9	Gpm6a	chr8	protein_coding	glycoprotein m6a
novel_NIR_19051	chr8	57000559	57002766	-	57000559	57002260	A5SS&ES	ENSMUST00000134162.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000038215.16	Cep44	chr8	protein_coding	centrosomal protein 44
novel_NIR_19052	chr8	57000559	57002766	-	57000559	57003098	A5SS	ENSMUST00000140107.8	novel	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.15	2	11	2	11	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	ENSMUSG00000038215.16	Cep44	chr8	protein_coding	centrosomal protein 44
novel_NIR_19053	chr8	57000559	57002766	-	57000559	57003723	A5SS	ENSMUST00000135337.8	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.17	2	10	2	10	y	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.25	1	3	1	3	n	0.14	1	6	1	6	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	ENSMUSG00000038215.16	Cep44	chr8	protein_coding	centrosomal protein 44
novel_NIR_19054	chr8	57004402	57017593	+	57017198	57017593	A5SS&ES	ENSMUST00000210863.2	novel	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	0.60	6	4	6	4	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000038206.14	Fbxo8	chr8	protein_coding	F-box protein 8
novel_NIR_19055	chr8	57004411	57010569	+	57004411	57017096	A3SS	ENSMUST00000210863.2	novel	0.60	3	2	3	2	y	1.00	2	0	2	0	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.25	1	3	1	3	n	1.00	1	0	1	0	n	0.50	2	2	2	2	n	0.00	0	2	0	2	n	1.00	2	0	2	0	n	ENSMUSG00000038206.14	Fbxo8	chr8	protein_coding	F-box protein 8
novel_NIR_19056	chr8	57004411	57017601	+	57004411	57017096	A3SS&ES	ENSMUST00000210863.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	2	2	2	2	y	-	-	-	-	-	-	ENSMUSG00000038206.14	Fbxo8	chr8	protein_coding	F-box protein 8
novel_NIR_19057	chr8	57010714	57017593	+	57017198	57017593	A5SS&ES	ENSMUST00000210863.2	novel	0.00	0	5	0	5	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000038206.14	Fbxo8	chr8	protein_coding	F-box protein 8
novel_NIR_19058	chr8	57022445	57043093	+	57022445	57044471	A3SS	ENSMUST00000110322.9	novel	0.50	1	1	1	1	n	0.50	1	1	1	1	n	1.00	3	0	3	0	y	0.25	1	3	1	3	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.89	8	1	8	1	y	0.67	2	1	2	1	y	1.00	11	0	11	0	y	0.00	0	2	0	2	n	0.83	5	1	5	1	y	1.00	1	0	1	0	n	ENSMUSG00000038206.14	Fbxo8	chr8	protein_coding	F-box protein 8
novel_NIR_19059	chr8	57794314	57798251	+	57785668	57798251	A5SS	ENSMUST00000210614.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000097910.3	Hdnr	chr8	lncRNA	Hand2 downstream lncRNA
novel_NIR_19060	chr8	57794314	57798251	+	57794097	57798251	A5SS	ENSMUST00000210633.2	novel	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000097910.3	Hdnr	chr8	lncRNA	Hand2 downstream lncRNA
novel_NIR_19061	chr8	57941227	57942662	+	57941227	57943374	A3SS	ENSMUST00000180690.2	novel	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.22	2	7	2	7	y	ENSMUSG00000096917.3	2500002B13Rik	chr8	lncRNA	RIKEN cDNA 2500002B13 gene
novel_NIR_19062	chr8	57942816	57943374	+	57941227	57943374	A5SS	ENSMUST00000180690.2	novel	0.00	0	6	0	6	n	0.08	1	12	1	12	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.20	3	12	3	12	y	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.08	1	11	1	11	n	0.00	0	8	0	8	n	0.25	1	3	1	3	n	0.00	0	7	0	7	n	ENSMUSG00000096917.3	2500002B13Rik	chr8	lncRNA	RIKEN cDNA 2500002B13 gene
novel_NIR_19063	chr8	60959517	60960123	+	60959651	60960123	5pMXE	ENSMUST00000209338.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000057228.7	Aadat	chr8	protein_coding	aminoadipate aminotransferase
novel_NIR_19064	chr8	60959953	60960123	+	60959651	60960123	A5SS	ENSMUST00000209338.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000057228.7	Aadat	chr8	protein_coding	aminoadipate aminotransferase
novel_NIR_19065	chr8	60971640	60982410	+	60971640	60973029	3pMXE	ENSMUST00000211032.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000057228.7	Aadat	chr8	protein_coding	aminoadipate aminotransferase
novel_NIR_19066	chr8	61343570	61349772	+	61343570	61358582	A3SS	ENSMUST00000146863.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038005.16	Hpf1	chr8	protein_coding	histone PARylation factor 1
novel_NIR_19067	chr8	61343570	61349772	+	61343570;61346894	61346735;61349772	ES	ENSMUST00000149267.8	novel	0.00	0	4.5	0	8;1	n	0.29	2	5.0	2	10;0	y	0.22	1	3.5	1	7;0	n	0.00	0	3.0	0	6;0	n	0.00	0	5.5	0	11;0	n	0.00	0	2.0	0	4;0	n	0.00	0	6.5	0	13;0	n	0.00	0	3.0	0	6;0	n	0.00	0	9.5	0	19;0	n	0.20	1	4.0	1	8;0	n	0.00	0	3.0	0	6;0	n	0.00	0	5.5	0	11;0	n	ENSMUSG00000038005.16	Hpf1	chr8	protein_coding	histone PARylation factor 1
novel_NIR_19068	chr8	61343570	61353118	+	61343570	61346735	A3SS&ES	ENSMUST00000136098.2	novel	0.27	3	8	3	8	y	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.13	2	13	2	13	n	0.00	0	6	0	6	n	0.00	0	19	0	19	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	ENSMUSG00000038005.16	Hpf1	chr8	protein_coding	histone PARylation factor 1
novel_NIR_19069	chr8	61343570	61353118	+	61343570	61358582	A3SS	ENSMUST00000146863.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038005.16	Hpf1	chr8	protein_coding	histone PARylation factor 1
novel_NIR_19070	chr8	61343570	61357034	+	61343570	61358582	A3SS	ENSMUST00000146863.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.71	5	2	5	2	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	2	2	2	2	n	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000038005.16	Hpf1	chr8	protein_coding	histone PARylation factor 1
novel_NIR_19071	chr8	61349870	61349985	+	61349870	61357034	A3SS	ENSMUST00000136098.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	ENSMUSG00000038005.16	Hpf1	chr8	protein_coding	histone PARylation factor 1
novel_NIR_19072	chr8	61357151	61358582	+	61343570	61358582	A5SS	ENSMUST00000146863.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038005.16	Hpf1	chr8	protein_coding	histone PARylation factor 1
novel_NIR_19073	chr8	61366209	61367657	-	61366209	61367612	A5SS	ENSMUST00000145741.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000004319.16	Clcn3	chr8	protein_coding	chloride channel, voltage-sensitive 3
novel_NIR_19074	chr8	61366209	61367657	-	61366209	61367787	A5SS	ENSMUST00000110302.8	novel	0.00	0	4	0	4	n	0.10	1	9	1	9	n	0.10	2	18	2	18	n	0.00	0	7	0	7	n	0.04	1	22	1	22	n	0.22	2	7	2	7	y	0.00	0	18	0	18	n	0.07	1	13	1	13	n	0.00	0	7	0	7	n	0.12	1	7	1	7	n	0.00	0	7	0	7	n	0.08	1	12	1	12	n	ENSMUSG00000004319.16	Clcn3	chr8	protein_coding	chloride channel, voltage-sensitive 3
novel_NIR_19075	chr8	61366209	61367714	-	61366209	61367612	A5SS	ENSMUST00000145741.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000004319.16	Clcn3	chr8	protein_coding	chloride channel, voltage-sensitive 3
novel_NIR_19076	chr8	61366209	61367714	-	61366209	61367787	A5SS	ENSMUST00000110302.8	novel	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	18	0	18	n	0.00	0	7	0	7	n	0.08	2	22	2	22	n	0.22	2	7	2	7	y	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.12	1	7	1	7	n	0.22	2	7	2	7	y	0.00	0	7	0	7	n	0.00	0	12	0	12	n	ENSMUSG00000004319.16	Clcn3	chr8	protein_coding	chloride channel, voltage-sensitive 3
novel_NIR_19077	chr8	61366209	61367738	-	61366209	61367612	A5SS	ENSMUST00000145741.8	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000004319.16	Clcn3	chr8	protein_coding	chloride channel, voltage-sensitive 3
novel_NIR_19078	chr8	61366209	61367738	-	61366209	61367787	A5SS	ENSMUST00000110302.8	novel	0.50	4	4	4	4	y	0.00	0	9	0	9	n	0.22	5	18	5	18	y	0.00	0	7	0	7	n	0.04	1	22	1	22	n	0.22	2	7	2	7	y	0.00	0	18	0	18	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	ENSMUSG00000004319.16	Clcn3	chr8	protein_coding	chloride channel, voltage-sensitive 3
novel_NIR_19079	chr8	61394448	61399264	-	61394448	61407577	A5SS	ENSMUST00000056508.12	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000004319.16	Clcn3	chr8	protein_coding	chloride channel, voltage-sensitive 3
novel_NIR_19080	chr8	61394448	61399264	-	61394448	61428766	A5SS	ENSMUST00000004430.14	novel	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.18	2	9	2	9	y	0.05	1	18	1	18	n	0.00	0	26	0	26	n	0.00	0	12	0	12	n	0.06	1	15	1	15	n	0.00	0	15	0	15	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	16	0	16	n	ENSMUSG00000004319.16	Clcn3	chr8	protein_coding	chloride channel, voltage-sensitive 3
novel_NIR_19081	chr8	61394448	61418316	-	61394448	61407577	5pMXE	ENSMUST00000056508.12	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	20	0	20	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000004319.16	Clcn3	chr8	protein_coding	chloride channel, voltage-sensitive 3
novel_NIR_19082	chr8	61394448	61418316	-	61394448	61428766	A5SS	ENSMUST00000004430.14	novel	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.69	20	9	20	9	y	0.00	0	18	0	18	n	0.00	0	26	0	26	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.00	0	15	0	15	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	16	0	16	n	ENSMUSG00000004319.16	Clcn3	chr8	protein_coding	chloride channel, voltage-sensitive 3
novel_NIR_19083	chr8	61394448	61418316	-	61394448	61435810	A5SS	ENSMUST00000093490.9	novel	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.44	20	25	20	25	y	0.00	0	22	0	22	n	0.00	0	9	0	9	n	0.00	0	33	0	33	n	0.00	0	19	0	19	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	17	0	17	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	ENSMUSG00000004319.16	Clcn3	chr8	protein_coding	chloride channel, voltage-sensitive 3
novel_NIR_19084	chr8	62003279	62043805	-	62003279	62137769	A5SS	ENSMUST00000121493.9	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.33	1	2	1	2	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000058056.17	Palld	chr8	protein_coding	palladin, cytoskeletal associated protein
novel_NIR_19085	chr8	62439723	62440386	+	62437223	62440386	A5SS	ENSMUST00000093485.3	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037921.16	Ddx60	chr8	protein_coding	DExD/H box helicase 60
novel_NIR_19086	chr8	62453737	62454107	+	62453737	62462976	A3SS	ENSMUST00000093485.3	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.25	2	6	2	6	y	0.00	0	6	0	6	n	ENSMUSG00000037921.16	Ddx60	chr8	protein_coding	DExD/H box helicase 60
novel_NIR_19087	chr8	62478025	62488076	+	62478025;62486560	62486409;62488076	ES	ENSMUST00000093485.3	novel	0.16	2	10.5	2	9;12	y	0.00	0	9.5	0	10;9	n	0.00	0	11.0	0	11;11	n	0.00	0	9.0	0	10;8	n	0.00	0	7.0	0	7;7	n	0.00	0	0.5	0	0;1	n	0.00	0	9.5	0	10;9	n	0.00	0	1.5	0	1;2	n	0.00	0	5.0	0	5;5	n	0.00	0	13.0	0	19;7	n	0.00	0	6.0	0	8;4	n	0.12	1	7.5	1	7;8	n	ENSMUSG00000037921.16	Ddx60	chr8	protein_coding	DExD/H box helicase 60
novel_NIR_19088	chr8	65175624	65176618	-	65175624	65186542	A5SS	ENSMUST00000145216.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031604.11	Msmo1	chr8	protein_coding	methylsterol monoxygenase 1
novel_NIR_19089	chr8	65180942	65182532	-	65180942	65182628	A5SS	ENSMUST00000141021.2	novel	0.33	2	4	2	4	y	1.00	3	0	3	0	y	0.25	1	3	1	3	n	0.50	2	2	2	2	y	0.52	12	11	12	11	y	0.30	3	7	3	7	y	0.08	1	12	1	12	n	0.45	5	6	5	6	y	0.57	4	3	4	3	y	0.43	3	4	3	4	y	0.83	5	1	5	1	y	0.00	0	2	0	2	n	ENSMUSG00000031604.11	Msmo1	chr8	protein_coding	methylsterol monoxygenase 1
novel_NIR_19090	chr8	65180942	65182532	-	65180942	65183806	A5SS	ENSMUST00000147419.2	novel	0.50	2	2	2	2	y	0.38	3	5	3	5	y	0.08	1	11	1	11	n	0.29	2	5	2	5	y	0.46	12	14	12	14	n	0.30	3	7	3	7	y	0.09	1	10	1	10	n	0.45	5	6	5	6	n	0.50	4	4	4	4	y	0.23	3	10	3	10	n	0.31	5	11	5	11	y	0.00	0	2	0	2	n	ENSMUSG00000031604.11	Msmo1	chr8	protein_coding	methylsterol monoxygenase 1
novel_NIR_19091	chr8	65180942	65183104	-	65180942	65182628	A5SS&ES	ENSMUST00000141021.2	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.12	1	7	1	7	n	0.14	2	12	2	12	n	0.25	2	6	2	6	y	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000031604.11	Msmo1	chr8	protein_coding	methylsterol monoxygenase 1
novel_NIR_19092	chr8	65180942	65183104	-	65180942	65183806	A5SS	ENSMUST00000147419.2	novel	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.08	1	11	1	11	n	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.12	1	7	1	7	n	0.17	2	10	2	10	y	0.25	2	6	2	6	y	0.20	1	4	1	4	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	ENSMUSG00000031604.11	Msmo1	chr8	protein_coding	methylsterol monoxygenase 1
novel_NIR_19093	chr8	65180942	65183170	-	65180942	65182628	A5SS&ES	ENSMUST00000141021.2	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.22	2	7	2	7	y	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000031604.11	Msmo1	chr8	protein_coding	methylsterol monoxygenase 1
novel_NIR_19094	chr8	65180942	65183889	-	65180942	65183806	A5SS	ENSMUST00000147419.2	novel	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.20	1	4	1	4	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.60	3	2	3	2	y	ENSMUSG00000031604.11	Msmo1	chr8	protein_coding	methylsterol monoxygenase 1
novel_NIR_19095	chr8	65180942	65186465	-	65180942	65182628	A5SS&ES	ENSMUST00000141021.2	novel	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.71	5	2	5	2	y	0.48	10	11	10	11	y	0.36	4	7	4	7	y	0.40	8	12	8	12	y	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.56	5	4	5	4	y	0.50	1	1	1	1	n	0.67	4	2	4	2	y	ENSMUSG00000031604.11	Msmo1	chr8	protein_coding	methylsterol monoxygenase 1
novel_NIR_19096	chr8	65180942	65186465	-	65180942	65183806	5pMXE	ENSMUST00000147419.2	novel	0.50	2	2	2	2	y	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.50	5	5	5	5	y	0.42	10	14	10	14	y	0.36	4	7	4	7	y	0.44	8	10	8	10	y	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.33	5	10	5	10	y	0.08	1	11	1	11	n	0.67	4	2	4	2	y	ENSMUSG00000031604.11	Msmo1	chr8	protein_coding	methylsterol monoxygenase 1
novel_NIR_19097	chr8	65180942;65182669	65182532;65183806	-	65180942	65183806	cassetteExon	ENSMUST00000147419.2	novel	0.33	1.0	2	2;0	2	n	0.23	1.5	5	3;0	5	n	0.04	0.5	11	1;0	11	n	0.17	1.0	5	2;0	5	n	0.35	7.5	14	12;3	14	y	0.18	1.5	7	3;0	7	n	0.23	3.0	10	1;5	10	n	0.37	3.5	6	5;2	6	y	0.33	2.0	4	4;0	4	n	0.20	2.5	10	3;2	10	y	0.19	2.5	11	5;0	11	n	0.00	0.0	2	0;0	2	n	ENSMUSG00000031604.11	Msmo1	chr8	protein_coding	methylsterol monoxygenase 1
novel_NIR_19098	chr8	65180942;65184076	65183889;65186542	-	65180942;65182669	65182628;65186542	MXE	ENSMUST00000141021.2	novel	0.00	0.0	2.5	0;0	4;1	n	0.33	0.5	1.0	1;0	0;2	n	0.64	4.5	2.5	0;9	3;2	n	0.60	3.0	2.0	0;6	2;2	n	0.38	4.5	7.5	0;9	11;4	n	0.36	2.0	3.5	0;4	7;0	n	0.30	3.5	8.0	0;7	12;4	n	0.31	2.5	5.5	0;5	6;5	n	0.55	3.0	2.5	1;5	3;2	n	0.00	0.0	3.0	0;0	4;2	n	0.00	0.0	2.5	0;0	1;4	n	0.77	5.0	1.5	3;7	2;1	y	ENSMUSG00000031604.11	Msmo1	chr8	protein_coding	methylsterol monoxygenase 1
novel_NIR_19099	chr8	65182669	65183806	-	65182669	65186542	A5SS	ENSMUST00000141021.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.43	3	4	3	4	n	-	-	-	-	-	-	0.56	5	4	5	4	n	0.29	2	5	2	5	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.00	0	1	0	1	n	ENSMUSG00000031604.11	Msmo1	chr8	protein_coding	methylsterol monoxygenase 1
novel_NIR_19100	chr8	65182669	65186465	-	65182669	65186542	A5SS	ENSMUST00000141021.2	novel	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	ENSMUSG00000031604.11	Msmo1	chr8	protein_coding	methylsterol monoxygenase 1
novel_NIR_19101	chr8	65182669;65184047	65183806;65186542	-	65182669	65186542	cassetteExon	ENSMUST00000141021.2	novel	0.00	0.0	1	0;0	1	n	0.00	0.0	2	0;0	2	n	0.00	0.0	2	0;0	2	n	0.00	0.0	2	0;0	2	n	0.27	1.5	4	3;0	4	n	-	-	-	-	-	-	0.47	3.5	4	5;2	4	y	0.17	1.0	5	2;0	5	n	0.00	0.0	2	0;0	2	n	0.33	1.0	2	2;0	2	n	0.00	0.0	4	0;0	4	n	0.00	0.0	1	0;0	1	n	ENSMUSG00000031604.11	Msmo1	chr8	protein_coding	methylsterol monoxygenase 1
novel_NIR_19102	chr8	65182669;65184076	65183806;65186542	-	65182669	65186542	cassetteExon	ENSMUST00000141021.2	novel	0.00	0.0	1	0;0	1	n	0.00	0.0	2	0;0	2	n	0.69	4.5	2	0;9	2	n	0.60	3.0	2	0;6	2	n	0.60	6.0	4	3;9	4	y	1.00	2.0	0	0;4	0	n	0.60	6.0	4	5;7	4	y	0.41	3.5	5	2;5	5	y	0.56	2.5	2	0;5	2	n	0.33	1.0	2	2;0	2	n	0.00	0.0	4	0;0	4	n	0.78	3.5	1	0;7	1	n	ENSMUSG00000031604.11	Msmo1	chr8	protein_coding	methylsterol monoxygenase 1
novel_NIR_19103	chr8	65184047	65186542	-	65175624	65186542	A3SS	ENSMUST00000145216.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031604.11	Msmo1	chr8	protein_coding	methylsterol monoxygenase 1
novel_NIR_19104	chr8	65184076	65186542	-	65175624	65186542	A3SS	ENSMUST00000145216.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	9	0	9	0	y	1.00	6	0	6	0	y	0.90	9	1	9	1	y	1.00	4	0	4	0	y	1.00	7	0	7	0	y	1.00	5	0	5	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	7	0	7	0	y	ENSMUSG00000031604.11	Msmo1	chr8	protein_coding	methylsterol monoxygenase 1
novel_NIR_19105	chr8	65184076	65186542	-	65182669	65186542	A3SS	ENSMUST00000141021.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.82	9	2	9	2	y	0.75	6	2	6	2	y	0.69	9	4	9	4	n	1.00	4	0	4	0	y	0.64	7	4	7	4	n	0.50	5	5	5	5	n	0.71	5	2	5	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.88	7	1	7	1	n	ENSMUSG00000031604.11	Msmo1	chr8	protein_coding	methylsterol monoxygenase 1
novel_NIR_19106	chr8	65251493	65252383	-	65251493	65252008	A5SS&ES	ENSMUST00000209458.2	novel	-	-	-	-	-	-	0.20	1	4	1	4	n	-	-	-	-	-	-	0.20	1	4	1	4	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.75	3	1	3	1	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000031605.9	Klhl2	chr8	protein_coding	kelch-like 2, Mayven
novel_NIR_19107	chr8	65251493	65252439	-	65251493;65252054	65252008;65252439	ES	ENSMUST00000209458.2	novel	1.00	9	0.0	9	0;0	y	0.33	1	2.0	1	4;0	n	0.94	8	0.5	8	0;1	y	0.70	7	3.0	7	4;2	y	0.53	4	3.5	4	5;2	y	1.00	2	0.0	2	0;0	y	0.72	9	3.5	9	6;1	y	1.00	3	0.0	3	0;0	y	0.83	5	1.0	5	1;1	y	0.89	12	1.5	12	1;2	y	0.67	4	2.0	4	2;2	y	0.70	7	3.0	7	4;2	y	ENSMUSG00000031605.9	Klhl2	chr8	protein_coding	kelch-like 2, Mayven
novel_NIR_19108	chr8	65412261	65416985	+	65412261	65418191	A3SS	ENSMUST00000079896.9	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000025521.16	Tmem192	chr8	protein_coding	transmembrane protein 192
novel_NIR_19109	chr8	67939597	67943620	+	67933667	67943620	A5SS	ENSMUST00000212171.2	novel	0.00	0	12	0	12	n	0.25	1	3	1	3	n	0.25	1	3	1	3	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.29	2	5	2	5	y	0.17	1	5	1	5	n	0.00	0	1	0	1	n	ENSMUSG00000025588.5	Nat1	chr8	protein_coding	N-acetyl transferase 1
novel_NIR_19110	chr8	68243593	68256097	-	68243593	68270600	A5SS	ENSMUST00000120071.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030465.20	Psd3	chr8	protein_coding	pleckstrin and Sec7 domain containing 3
novel_NIR_19111	chr8	68243593;68256235	68256097;68335633	-	68243593	68335633	cassetteExon	ENSMUST00000098696.10	novel	0.42	5.0	7	0;10	7	n	0.60	1.5	1	0;3	1	n	0.14	4.0	25	0;8	25	n	0.16	3.5	18	2;5	18	y	0.27	4.0	11	0;8	11	n	0.05	0.5	10	0;1	10	n	0.09	2.0	21	0;4	21	n	0.16	1.5	8	0;3	8	n	0.00	0.0	12	0;0	12	n	0.00	0.0	7	0;0	7	n	0.08	0.5	6	0;1	6	n	0.14	3.5	22	0;7	22	n	ENSMUSG00000030465.20	Psd3	chr8	protein_coding	pleckstrin and Sec7 domain containing 3
novel_NIR_19112	chr8	68256235	68335633	-	68243593	68335633	A3SS	ENSMUST00000098696.10	novel	0.59	10	7	10	7	y	0.75	3	1	3	1	y	0.24	8	25	8	25	y	0.22	5	18	5	18	n	0.42	8	11	8	11	y	0.09	1	10	1	10	n	0.16	4	21	4	21	y	0.27	3	8	3	8	y	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.14	1	6	1	6	n	0.24	7	22	7	22	y	ENSMUSG00000030465.20	Psd3	chr8	protein_coding	pleckstrin and Sec7 domain containing 3
novel_NIR_19113	chr8	68256235	68335633	-	68331264	68335633	3pMXE	ENSMUST00000146480.2	novel	0.91	10	1	10	1	y	1.00	3	0	3	0	y	1.00	8	0	8	0	y	1.00	5	0	5	0	y	1.00	8	0	8	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.88	7	1	7	1	y	ENSMUSG00000030465.20	Psd3	chr8	protein_coding	pleckstrin and Sec7 domain containing 3
novel_NIR_19114	chr8	68361538	68413205	-	68361538	68413039	A5SS	ENSMUST00000212505.2	novel	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.29	2	5	2	5	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	ENSMUSG00000030465.20	Psd3	chr8	protein_coding	pleckstrin and Sec7 domain containing 3
novel_NIR_19115	chr8	68417006	68447716	-	68417006	68426785	5pMXE	ENSMUST00000098696.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030465.20	Psd3	chr8	protein_coding	pleckstrin and Sec7 domain containing 3
novel_NIR_19116	chr8	68453477	68453690	-	68453477	68514796	A5SS	ENSMUST00000212505.2	novel	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.19	4	17	4	17	y	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	ENSMUSG00000030465.20	Psd3	chr8	protein_coding	pleckstrin and Sec7 domain containing 3
novel_NIR_19117	chr8	68453477	68453690	-	68453477	68573400	A5SS	ENSMUST00000212960.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030465.20	Psd3	chr8	protein_coding	pleckstrin and Sec7 domain containing 3
novel_NIR_19118	chr8	68574280	68664577	-	68574280	68658201	5pMXE	ENSMUST00000212960.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030465.20	Psd3	chr8	protein_coding	pleckstrin and Sec7 domain containing 3
novel_NIR_19119	chr8	68574280	68664577	-	68574280;68658255	68658201;68664577	ES	ENSMUST00000212994.2	novel	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1.0	0	0;2	n	0.00	0	1.0	0	2;0	n	-	-	-	-	-	-	0.00	0	1.0	0	0;2	n	ENSMUSG00000030465.20	Psd3	chr8	protein_coding	pleckstrin and Sec7 domain containing 3
novel_NIR_19120	chr8	68615264	68658201	-	68574280	68658201	A3SS	ENSMUST00000212960.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000030465.20	Psd3	chr8	protein_coding	pleckstrin and Sec7 domain containing 3
novel_NIR_19121	chr8	68747111	68747508	+	68747111	68749306	A3SS	ENSMUST00000066594.4	novel	0.11	1	8	1	8	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.00	0	4	0	4	n	0.17	3	15	3	15	y	0.00	0	4	0	4	n	ENSMUSG00000053886.5	Sh2d4a	chr8	protein_coding	SH2 domain containing 4A
novel_NIR_19122	chr8	68747651	68749306	+	68747111	68749306	A5SS	ENSMUST00000066594.4	novel	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.33	2	4	2	4	y	0.00	0	15	0	15	n	0.00	0	4	0	4	n	ENSMUSG00000053886.5	Sh2d4a	chr8	protein_coding	SH2 domain containing 4A
novel_NIR_19123	chr8	69274902	69276819	+	69274902	69276842	A3SS	ENSMUST00000110242.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000031864.17	Ints10	chr8	protein_coding	integrator complex subunit 10
novel_NIR_19124	chr8	69274902	69276819	+	69274902	69277704	A3SS	ENSMUST00000070713.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031864.17	Ints10	chr8	protein_coding	integrator complex subunit 10
novel_NIR_19125	chr8	69274902	69276820	+	69274902	69276842	A3SS	ENSMUST00000110242.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000031864.17	Ints10	chr8	protein_coding	integrator complex subunit 10
novel_NIR_19126	chr8	69274902	69276820	+	69274902	69277704	A3SS	ENSMUST00000070713.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031864.17	Ints10	chr8	protein_coding	integrator complex subunit 10
novel_NIR_19127	chr8	69531054	69541633	-	69527957	69541633	A3SS	ENSMUST00000142710.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000036330.13	Slc18a1	chr8	protein_coding	solute carrier family 18 (vesicular monoamine), member 1
novel_NIR_19128	chr8	69531054	69541633	-	69529915	69541633	A3SS	ENSMUST00000037478.13	novel	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.20	3	12	3	12	y	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	ENSMUSG00000036330.13	Slc18a1	chr8	protein_coding	solute carrier family 18 (vesicular monoamine), member 1
novel_NIR_19129	chr8	69531054	69541633	-	69540923	69541633	A3SS&ES	ENSMUST00000148856.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036330.13	Slc18a1	chr8	protein_coding	solute carrier family 18 (vesicular monoamine), member 1
novel_NIR_19130	chr8	69661811	69670166	+	69661811	69678995	A3SS	ENSMUST00000212681.2	novel	0.40	2	3	2	3	n	0.25	1	3	1	3	n	0.22	2	7	2	7	n	0.14	1	6	1	6	n	0.17	2	10	2	10	y	0.00	0	6	0	6	n	0.18	2	9	2	9	y	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.20	1	4	1	4	n	0.27	3	8	3	8	n	0.42	5	7	5	7	n	ENSMUSG00000059897.6	Zfp930	chr8	protein_coding	zinc finger protein 930
novel_NIR_19131	chr8	69661811;69670194	69670166;69678995	+	69661811	69678995	cassetteExon	ENSMUST00000212681.2	novel	0.45	2.5	3	2;3	3	y	0.25	1.0	3	1;1	3	n	0.26	2.5	7	2;3	7	y	0.14	1.0	6	1;1	6	n	0.09	1.0	10	2;0	10	n	0.00	0.0	6	0;0	6	n	0.10	1.0	9	2;0	9	n	0.00	0.0	4	0;0	4	n	0.07	0.5	7	0;1	7	n	0.11	0.5	4	1;0	4	n	0.27	3.0	8	3;3	8	y	0.33	3.5	7	5;2	7	y	ENSMUSG00000059897.6	Zfp930	chr8	protein_coding	zinc finger protein 930
novel_NIR_19132	chr8	69671040	69678995	+	69661811	69678995	A5SS	ENSMUST00000212681.2	novel	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.17	2	10	2	10	y	0.00	0	6	0	6	n	0.10	1	9	1	9	n	0.20	1	4	1	4	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.36	4	7	4	7	y	ENSMUSG00000059897.6	Zfp930	chr8	protein_coding	zinc finger protein 930
novel_NIR_19133	chr8	69829247	69847985	-	69828084	69847985	A3SS	ENSMUST00000239456.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000110444.3	Gm10033	chr8	protein_coding	predicted gene 10033
novel_NIR_19134	chr8	70007613	70019412	-	70017507	70019412	A3SS&ES	ENSMUST00000216296.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	ENSMUSG00000111594.2	Gm3365	chr8	unprocessed_pseudogene	predicted gene 3365
novel_NIR_19135	chr8	70017507	70018335	-	70017507	70019412	A5SS	ENSMUST00000216296.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000111594.2	Gm3365	chr8	unprocessed_pseudogene	predicted gene 3365
novel_NIR_19136	chr8	70028851	70032663	-	70028851	70037681	A5SS	ENSMUST00000216296.2	novel	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	ENSMUSG00000111594.2	Gm3365	chr8	unprocessed_pseudogene	predicted gene 3365
novel_NIR_19137	chr8	70072313	70078086	-	70072322	70078086	A3SS	ENSMUST00000121886.8	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.22	2	7	2	7	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	ENSMUSG00000060427.16	Zfp868	chr8	protein_coding	zinc finger protein 868
novel_NIR_19138	chr8	70072322	70077728	-	70072322	70078086	A5SS	ENSMUST00000121886.8	novel	0.00	0	4	0	4	n	0.67	2	1	2	1	y	0.00	0	13	0	13	n	0.29	2	5	2	5	y	0.21	3	11	3	11	y	0.57	4	3	4	3	y	0.00	0	7	0	7	n	0.33	1	2	1	2	n	0.20	1	4	1	4	n	0.33	5	10	5	10	y	0.14	1	6	1	6	n	0.17	2	10	2	10	y	ENSMUSG00000060427.16	Zfp868	chr8	protein_coding	zinc finger protein 868
novel_NIR_19139	chr8	70072322;70075902	70075783;70078086	-	70072322	70078086	cassetteExon	ENSMUST00000121886.8	novel	0.00	0.0	4	0;0	4	n	0.00	0.0	1	0;0	1	n	0.04	0.5	13	0;1	13	n	0.00	0.0	5	0;0	5	n	0.19	2.5	11	2;3	11	y	0.00	0.0	3	0;0	3	n	0.00	0.0	7	0;0	7	n	0.00	0.0	2	0;0	2	n	0.20	1.0	4	1;1	4	n	0.05	0.5	10	0;1	10	n	0.08	0.5	6	0;1	6	n	0.09	1.0	10	1;1	10	n	ENSMUSG00000060427.16	Zfp868	chr8	protein_coding	zinc finger protein 868
novel_NIR_19140	chr8	70167059	70169035	-	70163634	70169035	A3SS	ENSMUST00000238460.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000054648.9	Zfp869	chr8	protein_coding	zinc finger protein 869
novel_NIR_19141	chr8	70167059	70169035	-	70167059	70168934	A5SS	ENSMUST00000238657.2	novel	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.22	2	7	2	7	y	0.50	1	1	1	1	n	0.22	2	7	2	7	y	0.20	2	8	2	8	y	0.75	3	1	3	1	y	0.43	3	4	3	4	y	0.00	0	7	0	7	n	0.00	0	4	0	4	n	ENSMUSG00000054648.9	Zfp869	chr8	protein_coding	zinc finger protein 869
novel_NIR_19142	chr8	70167059	70169035	-	70167059	70169418	A5SS	ENSMUST00000238408.2	novel	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.29	2	5	2	5	y	0.20	1	4	1	4	n	0.20	2	8	2	8	y	0.22	2	7	2	7	y	0.50	3	3	3	3	y	0.50	3	3	3	3	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000054648.9	Zfp869	chr8	protein_coding	zinc finger protein 869
novel_NIR_19143	chr8	70167059	70169035	-	70167059	70169550	A5SS	ENSMUST00000238753.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.50	2	2	2	2	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000054648.9	Zfp869	chr8	protein_coding	zinc finger protein 869
novel_NIR_19144	chr8	70196260	70197111	-	70195919	70197111	A3SS	ENSMUST00000149782.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000092544.9	Gm20422	chr8	protein_coding	predicted gene 20422
novel_NIR_19145	chr8	70196260	70197111	-	70196260;70196902	70196842;70197111	ES	ENSMUST00000130458.8	novel	0.15	1	5.5	1	5;6	n	0.00	0	5.0	0	6;4	n	0.00	0	6.0	0	7;5	n	0.19	2	8.5	2	6;11	y	0.08	1	11.5	1	11;12	n	0.00	0	4.5	0	4;5	n	0.12	1	7.5	1	8;7	n	0.27	2	5.5	2	4;7	y	0.00	0	8.0	0	7;9	n	0.00	0	9.5	0	9;10	n	0.12	1	7.0	1	5;9	n	0.07	1	12.5	1	10;15	n	ENSMUSG00000092260.8	Zfp963	chr8	protein_coding	zinc finger protein 963
novel_NIR_19146	chr8	70196260	70197111	-	70196902	70197111	A3SS&ES	ENSMUST00000154063.2	novel	0.14	1	6	1	6	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.15	2	11	2	11	y	0.08	1	12	1	12	n	0.00	0	5	0	5	n	0.12	1	7	1	7	n	0.22	2	7	2	7	y	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.10	1	9	1	9	n	0.06	1	15	1	15	n	ENSMUSG00000092260.8	Zfp963	chr8	protein_coding	zinc finger protein 963
novel_NIR_19147	chr8	70249801	70249889	+	70249801	70250357	A3SS	ENSMUST00000238453.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	6	0	6	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031862.12	Atp13a1	chr8	protein_coding	ATPase type 13A1
novel_NIR_19148	chr8	70260368	70262424	+	70261470	70262424	5pMXE	ENSMUST00000036074.15	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	9	0	9	n	ENSMUSG00000036246.15	Gmip	chr8	protein_coding	Gem-interacting protein
novel_NIR_19149	chr8	70364519	70365573	-	70364519	70365552	A5SS	ENSMUST00000177851.9	novel	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	7	0	7	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	4	0	4	0	y	1.00	8	0	8	0	y	1.00	9	0	9	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000036180.16	Gatad2a	chr8	protein_coding	GATA zinc finger domain containing 2A
novel_NIR_19150	chr8	70365871	70367169	-	70365874	70367169	A3SS	ENSMUST00000177851.9	novel	0.01	1	81	1	81	n	0.14	10	61	10	61	n	0.04	4	99	4	99	n	0.07	5	68	5	68	n	0.13	12	83	12	83	n	0.06	3	47	3	47	n	0.11	11	86	11	86	n	0.04	3	68	3	68	n	0.03	2	62	2	62	n	0.15	15	87	15	87	y	0.06	4	59	4	59	n	0.03	2	71	2	71	n	ENSMUSG00000036180.16	Gatad2a	chr8	protein_coding	GATA zinc finger domain containing 2A
novel_NIR_19151	chr8	70369101	70369210	-	70369098	70369210	A3SS	ENSMUST00000177851.9	novel	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.30	3	7	3	7	y	0.00	0	6	0	6	n	0.08	1	12	1	12	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.17	2	10	2	10	y	0.50	1	1	1	1	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.75	3	1	3	1	y	ENSMUSG00000036180.16	Gatad2a	chr8	protein_coding	GATA zinc finger domain containing 2A
novel_NIR_19152	chr8	70369101	70369210	-	70369101	70369219	A5SS	ENSMUST00000065169.12	novel	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.13	3	20	3	20	n	0.00	0	11	0	11	n	0.06	1	16	1	16	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.17	2	10	2	10	y	0.11	1	8	1	8	n	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.30	3	7	3	7	y	ENSMUSG00000036180.16	Gatad2a	chr8	protein_coding	GATA zinc finger domain containing 2A
novel_NIR_19153	chr8	70388686	70426740	-	70388686	70389111	5pMXE	ENSMUST00000212277.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036180.16	Gatad2a	chr8	protein_coding	GATA zinc finger domain containing 2A
novel_NIR_19154	chr8	70388686	70448593	-	70388686	70389111	5pMXE	ENSMUST00000212277.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000036180.16	Gatad2a	chr8	protein_coding	GATA zinc finger domain containing 2A
novel_NIR_19155	chr8	70403404	70418741	-	70403404	70410950	5pMXE	ENSMUST00000211960.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036180.16	Gatad2a	chr8	protein_coding	GATA zinc finger domain containing 2A
novel_NIR_19156	chr8	70403404	70431031	-	70403404	70410950	5pMXE	ENSMUST00000211960.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000036180.16	Gatad2a	chr8	protein_coding	GATA zinc finger domain containing 2A
novel_NIR_19157	chr8	70403404	70431031	-	70403404	70426740	5pMXE	ENSMUST00000116463.4	novel	0.18	2	9	2	9	y	0.00	0	9	0	9	n	0.14	2	12	2	12	n	0.00	0	24	0	24	n	0.00	0	22	0	22	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.07	1	14	1	14	n	0.00	0	12	0	12	n	0.00	0	22	0	22	n	0.00	0	7	0	7	n	0.09	1	10	1	10	n	ENSMUSG00000036180.16	Gatad2a	chr8	protein_coding	GATA zinc finger domain containing 2A
novel_NIR_19158	chr8	70481424	70481652	-	70481424	70481858	A5SS	ENSMUST00000168013.3	novel	0.00	0	18	0	18	n	0.17	4	19	4	19	y	0.00	0	19	0	19	n	0.11	2	16	2	16	n	0.00	0	24	0	24	n	0.00	0	12	0	12	n	0.04	1	24	1	24	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	26	0	26	n	0.00	0	23	0	23	n	0.13	2	13	2	13	n	ENSMUSG00000031858.17	Mau2	chr8	protein_coding	MAU2 sister chromatid cohesion factor
novel_NIR_19159	chr8	70481747	70481858	-	70481424	70481858	A3SS	ENSMUST00000168013.3	novel	0.14	3	18	3	18	n	0.00	0	19	0	19	n	0.10	2	19	2	19	n	0.16	3	16	3	16	n	0.08	2	24	2	24	n	0.00	0	12	0	12	n	0.11	3	24	3	24	n	0.23	3	10	3	10	y	0.00	0	10	0	10	n	0.00	0	26	0	26	n	0.08	2	23	2	23	n	0.13	2	13	2	13	n	ENSMUSG00000031858.17	Mau2	chr8	protein_coding	MAU2 sister chromatid cohesion factor
novel_NIR_19160	chr8	70525878	70526928	+	70525739	70526928	A5SS	ENSMUST00000110160.9	novel	0.15	15	87	15	87	y	0.07	7	93	7	93	n	0.09	8	84	8	84	n	0.12	14	101	14	101	n	0.07	12	165	12	165	n	0.04	3	82	3	82	n	0.11	15	123	15	123	n	0.09	7	71	7	71	n	0.08	8	90	8	90	n	0.09	15	152	15	152	n	0.12	14	99	14	99	n	0.07	10	140	10	140	n	ENSMUSG00000036151.16	Tm6sf2	chr8	protein_coding	transmembrane 6 superfamily member 2
novel_NIR_19161	chr8	70585304	70585749	+	70585304	70585747	A3SS	ENSMUST00000211898.2	novel	0.23	17	56	17	56	y	0.46	22	26	22	26	y	0.27	25	67	25	67	y	0.29	14	35	14	35	y	0.17	13	65	13	65	y	0.27	11	30	11	30	y	0.34	22	43	22	43	y	0.31	8	18	8	18	y	0.31	14	31	14	31	y	0.22	14	50	14	50	y	0.17	11	53	11	53	y	0.40	18	27	18	27	y	ENSMUSG00000071078.7	Nr2c2ap	chr8	protein_coding	nuclear receptor 2C2-associated protein
novel_NIR_19162	chr8	70592422	70594520	+	70592422	70616879	A3SS	ENSMUST00000163756.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000079033.11	Mef2b	chr8	protein_coding	myocyte enhancer factor 2B
novel_NIR_19163	chr8	70633499	70633799	+	70633518	70633799	A5SS	ENSMUST00000147656.8	novel	1.00	2	0	2	0	y	0.50	1	1	1	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000002342.18	Tmem161a	chr8	protein_coding	transmembrane protein 161A
novel_NIR_19164	chr8	70696706	70704264	+	70696706;70701196	70701076;70704264	ES	ENSMUST00000164403.8	novel	0.05	1	17.5	1	17;18	n	0.00	0	16.5	0	25;8	n	0.00	0	21.5	0	22;21	n	0.00	0	16.0	0	21;11	n	0.00	0	29.5	0	29;30	n	0.00	0	7.5	0	10;5	n	0.20	5	20.5	5	20;21	y	0.00	0	10.5	0	12;9	n	0.00	0	13.5	0	14;13	n	0.00	0	19.5	0	26;13	n	0.00	0	11.0	0	12;10	n	0.07	1	13.0	1	15;11	n	ENSMUSG00000036054.16	Sugp2	chr8	protein_coding	SURP and G patch domain containing 2
novel_NIR_19165	chr8	70696706	70704264	+	70696706;70701196	70701079;70704264	ES	ENSMUST00000156330.2	novel	0.10	1	9.0	1	0;18	n	0.00	0	4.0	0	0;8	n	0.00	0	10.5	0	0;21	n	0.00	0	5.5	0	0;11	n	0.00	0	15.0	0	0;30	n	0.00	0	2.5	0	0;5	n	0.32	5	10.5	5	0;21	y	0.00	0	5.5	0	2;9	n	0.00	0	6.5	0	0;13	n	0.00	0	7.0	0	1;13	n	0.00	0	6.0	0	2;10	n	0.15	1	5.5	1	0;11	n	ENSMUSG00000036054.16	Sugp2	chr8	protein_coding	SURP and G patch domain containing 2
novel_NIR_19166	chr8	70696706	70704264	+	70701196	70704264	5pMXE	ENSMUST00000135640.2	novel	0.05	1	18	1	18	n	0.00	0	8	0	8	n	0.00	0	21	0	21	n	0.00	0	11	0	11	n	0.00	0	30	0	30	n	0.00	0	5	0	5	n	0.19	5	21	5	21	y	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.08	1	11	1	11	n	ENSMUSG00000036054.16	Sugp2	chr8	protein_coding	SURP and G patch domain containing 2
novel_NIR_19167	chr8	70706340	70712333	+	70706340	70731073	A3SS	ENSMUST00000148378.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036054.16	Sugp2	chr8	protein_coding	SURP and G patch domain containing 2
novel_NIR_19168	chr8	70713704	70713881	+	70713239	70713881	A5SS	ENSMUST00000133924.8	novel	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.17	2	10	2	10	y	0.00	0	17	0	17	n	0.00	0	7	0	7	n	ENSMUSG00000036054.16	Sugp2	chr8	protein_coding	SURP and G patch domain containing 2
novel_NIR_19169	chr8	70713765	70713881	+	70713239	70713881	A5SS	ENSMUST00000133924.8	novel	0.44	4	5	4	5	y	0.38	3	5	3	5	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.25	3	9	3	9	y	0.00	0	1	0	1	n	0.25	3	9	3	9	y	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	17	0	17	n	0.00	0	7	0	7	n	ENSMUSG00000036054.16	Sugp2	chr8	protein_coding	SURP and G patch domain containing 2
novel_NIR_19170	chr8	70738712	70740237	+	70738712	70738946	3pMXE	ENSMUST00000087467.12	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000003573.16	Homer3	chr8	protein_coding	homer scaffolding protein 3
novel_NIR_19171	chr8	70738712	70740237	+	70738712	70742044	A3SS	ENSMUST00000140212.8	novel	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.67	2	1	2	1	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	ENSMUSG00000003573.16	Homer3	chr8	protein_coding	homer scaffolding protein 3
novel_NIR_19172	chr8	70757346	70757939	+	70757346	70759149	A3SS	ENSMUST00000168018.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000055681.15	Cope	chr8	protein_coding	coatomer protein complex, subunit epsilon
novel_NIR_19173	chr8	70760690	70761145	+	70759301	70761145	A5SS	ENSMUST00000150968.8	novel	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.25	2	6	2	6	y	0.67	2	1	2	1	y	0.17	1	5	1	5	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	ENSMUSG00000055681.15	Cope	chr8	protein_coding	coatomer protein complex, subunit epsilon
novel_NIR_19174	chr8	70853354	70857909	-	70853354	70855081	5pMXE	ENSMUST00000125273.2	novel	0.00	0	13	0	13	n	0.20	1	4	1	4	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.22	2	7	2	7	y	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	ENSMUSG00000003575.14	Crtc1	chr8	protein_coding	CREB regulated transcription coactivator 1
novel_NIR_19175	chr8	70853354	70857909	-	70853354;70855175	70855081;70857909	ES	ENSMUST00000076615.6	novel	0.00	0	12.5	0	13;12	n	0.25	1	3.0	1	4;2	n	0.00	0	8.5	0	10;7	n	0.00	0	3.0	0	6;0	n	0.00	0	5.5	0	6;5	n	0.00	0	4.0	0	5;3	n	0.29	2	5.0	2	7;3	y	0.00	0	3.0	0	0;6	n	0.00	0	6.0	0	6;6	n	0.00	0	5.5	0	5;6	n	0.00	0	7.5	0	8;7	n	0.00	0	8.0	0	11;5	n	ENSMUSG00000003575.14	Crtc1	chr8	protein_coding	CREB regulated transcription coactivator 1
novel_NIR_19176	chr8	70857418	70857909	-	70855175	70857909	A3SS	ENSMUST00000076615.6	novel	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	1.00	3	0	3	0	y	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.25	2	6	2	6	y	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.17	1	5	1	5	n	ENSMUSG00000003575.14	Crtc1	chr8	protein_coding	CREB regulated transcription coactivator 1
novel_NIR_19177	chr8	70858865	70892083	-	70858865;70861661	70861545;70892083	ES	ENSMUST00000076615.6	novel	0.00	0	2.5	0	2;3	n	0.00	0	1.5	0	2;1	n	0.11	1	8.0	1	7;9	n	0.00	0	3.5	0	4;3	n	0.00	0	8.0	0	8;8	n	0.00	0	5.5	0	7;4	n	0.24	2	6.5	2	10;3	y	0.00	0	5.0	0	9;1	n	0.00	0	3.0	0	4;2	n	0.00	0	9.5	0	15;4	n	0.00	0	7.0	0	6;8	n	0.00	0	6.0	0	8;4	n	ENSMUSG00000003575.14	Crtc1	chr8	protein_coding	CREB regulated transcription coactivator 1
novel_NIR_19178	chr8	70928586	70929500	-	70905669	70929500	A3SS	ENSMUST00000166976.3	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000055707.14	Klhl26	chr8	protein_coding	kelch-like 26
novel_NIR_19179	chr8	70928586	70929500	-	70908298	70929500	A3SS	ENSMUST00000209415.2	novel	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.33	3	6	3	6	y	0.00	0	5	0	5	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.17	1	5	1	5	n	ENSMUSG00000055707.14	Klhl26	chr8	protein_coding	kelch-like 26
novel_NIR_19180	chr8	70929222	70929500	-	70905669	70929500	A3SS	ENSMUST00000166976.3	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	4	0	4	0	y	-	-	-	-	-	-	ENSMUSG00000055707.14	Klhl26	chr8	protein_coding	kelch-like 26
novel_NIR_19181	chr8	70929222	70929500	-	70908298	70929500	A3SS	ENSMUST00000209415.2	novel	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.14	1	6	1	6	n	0.38	3	5	3	5	y	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.67	4	2	4	2	y	0.00	0	5	0	5	n	ENSMUSG00000055707.14	Klhl26	chr8	protein_coding	kelch-like 26
novel_NIR_19182	chr8	70956142	70956242	+	70956142	70956247	A3SS	ENSMUST00000008032.14	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000007888.16	Crlf1	chr8	protein_coding	cytokine receptor-like factor 1
novel_NIR_19183	chr8	70956142	70956242	+	70956142	70956471	A3SS	ENSMUST00000127983.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000007888.16	Crlf1	chr8	protein_coding	cytokine receptor-like factor 1
novel_NIR_19184	chr8	70962281	70962371	-	70962281	70962768	A5SS	ENSMUST00000140679.8	novel	0.00	0	26	0	26	n	0.00	0	33	0	33	n	0.00	0	47	0	47	n	0.00	0	36	0	36	n	0.09	5	53	5	53	n	0.00	0	25	0	25	n	0.00	0	61	0	61	n	0.00	0	13	0	13	n	0.39	23	36	23	36	y	0.00	0	72	0	72	n	0.34	29	56	29	56	y	0.00	0	50	0	50	n	ENSMUSG00000090137.9	Uba52	chr8	protein_coding	ubiquitin A-52 residue ribosomal protein fusion product 1
novel_NIR_19185	chr8	70962281	70963334	-	70962284	70963334	A3SS	ENSMUST00000135446.8	novel	0.20	2	8	2	8	y	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000090137.9	Uba52	chr8	protein_coding	ubiquitin A-52 residue ribosomal protein fusion product 1
novel_NIR_19186	chr8	70962284	70962371	-	70962284	70963334	A5SS	ENSMUST00000135446.8	novel	0.38	5	8	5	8	y	0.33	2	4	2	4	y	0.42	5	7	5	7	y	0.60	3	2	3	2	y	0.50	3	3	3	3	y	1.00	2	0	2	0	y	0.62	8	5	8	5	y	1.00	1	0	1	0	n	0.20	1	4	1	4	n	0.45	5	6	5	6	y	1.00	10	0	10	0	y	0.82	9	2	9	2	y	ENSMUSG00000090137.9	Uba52	chr8	protein_coding	ubiquitin A-52 residue ribosomal protein fusion product 1
novel_NIR_19187	chr8	70962284	70962371	-	70962284	70968045	A5SS	ENSMUST00000121623.8	novel	0.71	5	2	5	2	y	0.33	2	4	2	4	y	0.71	5	2	5	2	y	0.60	3	2	3	2	y	0.27	3	8	3	8	y	1.00	2	0	2	0	y	0.42	8	11	8	11	y	0.33	1	2	1	2	n	0.20	1	4	1	4	n	0.38	5	8	5	8	y	0.56	10	8	10	8	y	0.64	9	5	9	5	y	ENSMUSG00000055553.17	Kxd1	chr8	protein_coding	KxDL motif containing 1
novel_NIR_19188	chr8	70962284	70962464	-	70962284	70963334	A5SS	ENSMUST00000135446.8	novel	0.00	0	8	0	8	n	0.20	1	4	1	4	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.29	2	5	2	5	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	6	0	6	n	1.00	1	0	1	0	n	0.60	3	2	3	2	y	ENSMUSG00000090137.9	Uba52	chr8	protein_coding	ubiquitin A-52 residue ribosomal protein fusion product 1
novel_NIR_19189	chr8	70962284	70962464	-	70962284	70968045	A5SS	ENSMUST00000121623.8	novel	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.15	2	11	2	11	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.11	1	8	1	8	n	0.38	3	5	3	5	y	ENSMUSG00000055553.17	Kxd1	chr8	protein_coding	KxDL motif containing 1
novel_NIR_19190	chr8	70962284	70962764	-	70962284	70963334	A5SS	ENSMUST00000135446.8	novel	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.60	3	2	3	2	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	6	0	6	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	ENSMUSG00000090137.9	Uba52	chr8	protein_coding	ubiquitin A-52 residue ribosomal protein fusion product 1
novel_NIR_19191	chr8	70962284	70962764	-	70962284	70968045	A5SS	ENSMUST00000121623.8	novel	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.60	3	2	3	2	y	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.11	1	8	1	8	n	0.00	0	5	0	5	n	ENSMUSG00000055553.17	Kxd1	chr8	protein_coding	KxDL motif containing 1
novel_NIR_19192	chr8	70962284	70962868	-	70962284	70963334	A5SS	ENSMUST00000135446.8	novel	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.29	2	5	2	5	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	6	0	6	n	1.00	4	0	4	0	y	0.33	1	2	1	2	n	ENSMUSG00000090137.9	Uba52	chr8	protein_coding	ubiquitin A-52 residue ribosomal protein fusion product 1
novel_NIR_19193	chr8	70962284	70962868	-	70962284	70968045	A5SS	ENSMUST00000121623.8	novel	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.15	2	11	2	11	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.33	4	8	4	8	y	0.17	1	5	1	5	n	ENSMUSG00000055553.17	Kxd1	chr8	protein_coding	KxDL motif containing 1
novel_NIR_19194	chr8	70962284	70963712	-	70962284	70963334	5pMXE	ENSMUST00000135446.8	novel	0.11	1	8	1	8	n	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.29	2	5	2	5	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000090137.9	Uba52	chr8	protein_coding	ubiquitin A-52 residue ribosomal protein fusion product 1
novel_NIR_19195	chr8	70962284	70963712	-	70962284	70968045	A5SS	ENSMUST00000121623.8	novel	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.15	2	11	2	11	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	ENSMUSG00000055553.17	Kxd1	chr8	protein_coding	KxDL motif containing 1
novel_NIR_19196	chr8	70966809	70968045	-	70962284	70968045	A3SS	ENSMUST00000121623.8	novel	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.60	3	2	3	2	y	0.00	0	2	0	2	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.08	1	11	1	11	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.27	3	8	3	8	y	0.00	0	8	0	8	n	0.00	0	5	0	5	n	ENSMUSG00000055553.17	Kxd1	chr8	protein_coding	KxDL motif containing 1
novel_NIR_19197	chr8	70966809	70968045	-	70967398	70968045	A3SS&ES	ENSMUST00000155677.8	novel	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.60	3	2	3	2	y	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.12	1	7	1	7	n	0.00	0	6	0	6	n	0.25	1	3	1	3	n	0.38	3	5	3	5	y	0.00	0	10	0	10	n	0.00	0	6	0	6	n	ENSMUSG00000055553.17	Kxd1	chr8	protein_coding	KxDL motif containing 1
novel_NIR_19198	chr8	70971167	70972634	-	70971167	70972522	A5SS	ENSMUST00000132867.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000055553.17	Kxd1	chr8	protein_coding	KxDL motif containing 1
novel_NIR_19199	chr8	70972711	70975766	-	70972711	70975828	A5SS	ENSMUST00000118850.8	novel	0.00	0	16	0	16	n	0.14	1	6	1	6	n	0.11	1	8	1	8	n	0.19	4	17	4	17	y	0.18	3	14	3	14	y	0.00	0	7	0	7	n	0.22	2	7	2	7	y	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.16	4	21	4	21	y	ENSMUSG00000055553.17	Kxd1	chr8	protein_coding	KxDL motif containing 1
novel_NIR_19200	chr8	70972711	70975766	-	70972711	70980295	A5SS	ENSMUST00000138260.8	novel	0.00	0	4	0	4	n	0.07	1	14	1	14	n	0.07	1	13	1	13	n	0.31	4	9	4	9	y	0.21	3	11	3	11	y	0.00	0	6	0	6	n	0.14	2	12	2	12	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.40	4	6	4	6	y	ENSMUSG00000055553.17	Kxd1	chr8	protein_coding	KxDL motif containing 1
novel_NIR_19201	chr8	70972711	70979881	-	70972711	70980295	A5SS	ENSMUST00000138260.8	novel	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.15	2	11	2	11	y	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	ENSMUSG00000055553.17	Kxd1	chr8	protein_coding	KxDL motif containing 1
novel_NIR_19202	chr8	70986844	70986921	+	70986844	70987038	A3SS	ENSMUST00000134893.2	novel	-	-	-	-	-	-	0.29	2	5	2	5	y	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	ENSMUSG00000019428.17	Fkbp8	chr8	protein_coding	FK506 binding protein 8
novel_NIR_19203	chr8	70987264	71025513	+	70992142	71025513	5pMXE	ENSMUST00000210155.2	novel	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000070002.8	Ell	chr8	protein_coding	elongation factor RNA polymerase II
novel_NIR_19204	chr8	71013089	71025513	+	70992142	71025513	A5SS	ENSMUST00000210155.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000070002.8	Ell	chr8	protein_coding	elongation factor RNA polymerase II
novel_NIR_19205	chr8	71051831	71052024	-	71051678	71052024	A3SS	ENSMUST00000211488.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000070003.8	Ssbp4	chr8	protein_coding	single stranded DNA binding protein 4
novel_NIR_19206	chr8	71052407	71052659	-	71052407	71053046	A5SS	ENSMUST00000211608.2	novel	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.22	2	7	2	7	y	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000070003.8	Ssbp4	chr8	protein_coding	single stranded DNA binding protein 4
novel_NIR_19207	chr8	71052407	71052659	-	71052407;71052549	71052490;71052659	ES	ENSMUST00000210580.2	novel	0.00	0	3.0	0	5;1	n	0.00	0	4.5	0	9;0	n	0.22	2	7.0	2	14;0	y	0.00	0	1.5	0	3;0	n	0.00	0	7.0	0	14;0	n	0.00	0	5.0	0	9;1	n	0.00	0	8.5	0	17;0	n	0.00	0	0.5	0	1;0	n	0.00	0	1.0	0	2;0	n	0.00	0	5.0	0	9;1	n	0.00	0	3.5	0	7;0	n	0.00	0	4.0	0	6;2	n	ENSMUSG00000070003.8	Ssbp4	chr8	protein_coding	single stranded DNA binding protein 4
novel_NIR_19208	chr8	71055296	71060840	-	71055296	71060647	5pMXE	ENSMUST00000211153.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000070003.8	Ssbp4	chr8	protein_coding	single stranded DNA binding protein 4
novel_NIR_19209	chr8	71055296	71060840	-	71055296	71061223	A5SS	ENSMUST00000210369.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000070003.8	Ssbp4	chr8	protein_coding	single stranded DNA binding protein 4
novel_NIR_19210	chr8	71084241	71084800	-	71084274	71084800	A3SS	ENSMUST00000110103.2	novel	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038508.8	Gdf15	chr8	protein_coding	growth differentiation factor 15
novel_NIR_19211	chr8	71105171	71110027	-	71105171	71107084	A5SS&ES	ENSMUST00000210786.2	novel	0.00	0	4	0	4	n	0.50	1	1	1	1	n	0.80	4	1	4	1	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.75	3	1	3	1	y	0.67	2	1	2	1	y	0.50	1	1	1	1	n	0.20	1	4	1	4	n	0.25	1	3	1	3	n	0.40	2	3	2	3	y	ENSMUSG00000056204.9	Pgpep1	chr8	protein_coding	pyroglutamyl-peptidase I
novel_NIR_19212	chr8	71105171	71110027	-	71105171	71107886	5pMXE	ENSMUST00000211526.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000056204.9	Pgpep1	chr8	protein_coding	pyroglutamyl-peptidase I
novel_NIR_19213	chr8	71110130	71110435	-	71110130	71111428	A5SS	ENSMUST00000210459.2	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	6	0	6	n	ENSMUSG00000056204.9	Pgpep1	chr8	protein_coding	pyroglutamyl-peptidase I
novel_NIR_19214	chr8	71110130	71110435	-	71110130	71112951	A5SS	ENSMUST00000210193.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000056204.9	Pgpep1	chr8	protein_coding	pyroglutamyl-peptidase I
novel_NIR_19215	chr8	71110130	71111734	-	71110130	71111428	5pMXE	ENSMUST00000210459.2	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	6	0	6	n	ENSMUSG00000056204.9	Pgpep1	chr8	protein_coding	pyroglutamyl-peptidase I
novel_NIR_19216	chr8	71110130	71111734	-	71110130	71112951	A5SS	ENSMUST00000210193.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000056204.9	Pgpep1	chr8	protein_coding	pyroglutamyl-peptidase I
novel_NIR_19217	chr8	71110130	71112735	-	71110130	71111428	5pMXE	ENSMUST00000210459.2	novel	0.29	2	5	2	5	y	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.40	4	6	4	6	y	0.50	6	6	6	6	y	0.33	1	2	1	2	n	0.50	2	2	2	2	y	0.50	1	1	1	1	n	0.44	4	5	4	5	y	0.43	3	4	3	4	y	1.00	2	0	2	0	y	0.00	0	6	0	6	n	ENSMUSG00000056204.9	Pgpep1	chr8	protein_coding	pyroglutamyl-peptidase I
novel_NIR_19218	chr8	71110130	71112735	-	71110130	71112951	A5SS	ENSMUST00000210193.2	novel	0.50	2	2	2	2	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.80	4	1	4	1	y	0.60	6	4	6	4	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	0.75	3	1	3	1	y	0.50	2	2	2	2	y	-	-	-	-	-	-	ENSMUSG00000056204.9	Pgpep1	chr8	protein_coding	pyroglutamyl-peptidase I
novel_NIR_19219	chr8	71179698	71180418	+	71179698	71182757	A3SS	ENSMUST00000239435.2	novel	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000031842.16	Pde4c	chr8	protein_coding	phosphodiesterase 4C, cAMP specific
novel_NIR_19220	chr8	71179698	71180418	+	71179698	71197923	A3SS	ENSMUST00000123739.8	novel	0.18	2	9	2	9	y	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.20	2	8	2	8	y	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.08	1	12	1	12	n	0.11	1	8	1	8	n	0.00	0	14	0	14	n	ENSMUSG00000031842.16	Pde4c	chr8	protein_coding	phosphodiesterase 4C, cAMP specific
novel_NIR_19221	chr8	71184547	71197923	+	71182933	71197923	A5SS	ENSMUST00000239435.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000031842.16	Pde4c	chr8	protein_coding	phosphodiesterase 4C, cAMP specific
novel_NIR_19222	chr8	71184547	71197923	+	71195898	71197923	5pMXE	ENSMUST00000224874.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000031842.16	Pde4c	chr8	protein_coding	phosphodiesterase 4C, cAMP specific
novel_NIR_19223	chr8	71212113	71213025	-	71212113	71212739	A5SS&ES	ENSMUST00000212617.2	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.22	2	7	2	7	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	ENSMUSG00000035559.10	Mpv17l2	chr8	protein_coding	MPV17 mitochondrial membrane protein-like 2
novel_NIR_19224	chr8	71212154	71213014	-	71212899	71213014	A3SS&ES	ENSMUST00000212617.2	novel	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.14	1	6	1	6	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.20	3	12	3	12	y	0.11	1	8	1	8	n	0.00	0	6	0	6	n	ENSMUSG00000035559.10	Mpv17l2	chr8	protein_coding	MPV17 mitochondrial membrane protein-like 2
novel_NIR_19225	chr8	71216524	71216721	-	71216524	71217192	A5SS	ENSMUST00000222087.4	novel	0.35	39	74	39	74	y	0.21	20	77	20	77	y	0.05	5	86	5	86	n	0.59	44	31	44	31	y	0.37	52	88	52	88	y	0.20	14	56	14	56	y	0.37	51	86	51	86	y	0.38	21	35	21	35	y	0.62	53	33	53	33	y	0.77	88	26	88	26	y	0.60	55	37	55	37	y	0.71	53	22	53	22	y	ENSMUSG00000031838.11	Ifi30	chr8	protein_coding	interferon gamma inducible protein 30
novel_NIR_19226	chr8	71225597	71227300	-	71225560	71227300	A3SS	ENSMUST00000154685.2	novel	0.67	2	1	2	1	y	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000031834.16	Pik3r2	chr8	protein_coding	phosphoinositide-3-kinase regulatory subunit 2
novel_NIR_19227	chr8	71238244	71238801	-	71238137	71238801	A3SS	ENSMUST00000166004.3	novel	0.00	0	30	0	30	n	0.00	0	29	0	29	n	0.00	0	22	0	22	n	0.16	6	31	6	31	y	0.00	0	44	0	44	n	0.00	0	5	0	5	n	0.00	0	25	0	25	n	0.00	0	15	0	15	n	0.00	0	15	0	15	n	0.00	0	22	0	22	n	0.00	0	20	0	20	n	0.00	0	30	0	30	n	ENSMUSG00000031833.11	Mast3	chr8	protein_coding	microtubule associated serine/threonine kinase 3
novel_NIR_19228	chr8	71246686	71249357	-	71242729	71249357	A3SS	ENSMUST00000166004.3	novel	0.42	11	15	11	15	y	0.64	14	8	14	8	y	0.09	2	20	2	20	n	0.26	6	17	6	17	y	0.24	6	19	6	19	y	0.14	1	6	1	6	n	0.19	3	13	3	13	y	0.00	0	8	0	8	n	0.62	10	6	10	6	y	0.54	14	12	14	12	y	0.43	6	8	6	8	y	0.62	15	9	15	9	y	ENSMUSG00000031833.11	Mast3	chr8	protein_coding	microtubule associated serine/threonine kinase 3
novel_NIR_19229	chr8	71269683	71269853	+	71269683	71269856	A3SS	ENSMUST00000000808.8	novel	0.00	0	10	0	10	n	1.00	1	0	1	0	n	0.33	2	4	2	4	y	0.00	0	1	0	1	n	0.11	1	8	1	8	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.33	1	2	1	2	n	ENSMUSG00000000791.10	Il12rb1	chr8	protein_coding	interleukin 12 receptor, beta 1
novel_NIR_19230	chr8	71289645	71289754	-	71289664	71289754	A3SS	ENSMUST00000002989.11	novel	0.00	0	18	0	18	n	0.12	3	23	3	23	n	0.15	2	11	2	11	y	0.00	0	23	0	23	n	0.00	0	42	0	42	n	0.00	0	15	0	15	n	0.05	2	40	2	40	n	0.00	0	19	0	19	n	0.03	1	28	1	28	n	0.04	1	25	1	25	n	0.11	3	24	3	24	n	0.00	0	21	0	21	n	ENSMUSG00000002910.12	Arrdc2	chr8	protein_coding	arrestin domain containing 2
novel_NIR_19231	chr8	71290190	71291386	-	71290190	71291338	A5SS	ENSMUST00000002989.11	novel	0.00	0	14	0	14	n	0.17	2	10	2	10	y	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.00	0	18	0	18	n	0.00	0	8	0	8	n	0.00	0	21	0	21	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	17	0	17	n	0.00	0	15	0	15	n	0.00	0	12	0	12	n	ENSMUSG00000002910.12	Arrdc2	chr8	protein_coding	arrestin domain containing 2
novel_NIR_19232	chr8	71290190	71291386	-	71290190	71292252	A5SS	ENSMUST00000212405.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000002910.12	Arrdc2	chr8	protein_coding	arrestin domain containing 2
novel_NIR_19233	chr8	71299208	71300844	-	71299208	71299408	A5SS&ES	ENSMUST00000110078.5	novel	1.00	1	0	1	0	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.00	0	4	0	4	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.50	2	2	2	2	y	-	-	-	-	-	-	ENSMUSG00000002908.18	Kcnn1	chr8	protein_coding	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1
novel_NIR_19234	chr8	71299208	71300844	-	71299208	71300697	A5SS&ES	ENSMUST00000110081.10	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000002908.18	Kcnn1	chr8	protein_coding	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1
novel_NIR_19235	chr8	71299208	71300844	-	71299208	71300819	A5SS	ENSMUST00000212509.3	novel	0.09	1	10	1	10	n	0.10	1	9	1	9	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.06	1	15	1	15	n	0.50	1	1	1	1	n	0.00	0	12	0	12	n	0.11	1	8	1	8	n	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.11	2	17	2	17	n	0.00	0	7	0	7	n	ENSMUSG00000002908.18	Kcnn1	chr8	protein_coding	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1
novel_NIR_19236	chr8	71299208	71300844	-	71299208;71299416	71299408;71300844	ES	ENSMUST00000212243.2	novel	1.00	1	0.0	1	0;0	n	0.67	1	0.5	1	1;0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	1	0.5	1	1;0	n	1.00	1	0.0	1	0;0	n	0.00	0	2.5	0	4;1	n	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	0.44	2	2.5	2	2;3	y	-	-	-	-	-	-	ENSMUSG00000002908.18	Kcnn1	chr8	protein_coding	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1
novel_NIR_19237	chr8	71308121	71308938	-	71308121	71309576	A5SS	ENSMUST00000110081.10	novel	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	ENSMUSG00000002908.18	Kcnn1	chr8	protein_coding	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1
novel_NIR_19238	chr8	71308121	71308938	-	71308121	71314309	A5SS	ENSMUST00000212611.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000002908.18	Kcnn1	chr8	protein_coding	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1
novel_NIR_19239	chr8	71308121	71308938	-	71308121	71314342	A5SS	ENSMUST00000212414.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000002908.18	Kcnn1	chr8	protein_coding	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1
novel_NIR_19240	chr8	71322718	71325836	-	71322718	71325688	A5SS	ENSMUST00000212680.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000007721.7	Ccdc124	chr8	protein_coding	coiled-coil domain containing 124
novel_NIR_19241	chr8	71348689	71348772	-	71348689	71348790	A5SS	ENSMUST00000212129.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	34	0	34	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	31	0	31	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000045128.10	Rpl18a	chr8	protein_coding	ribosomal protein L18A
novel_NIR_19242	chr8	71708209	71708652	-	71708209;71708356	71708291;71708652	ES	ENSMUST00000110071.3	novel	0.00	0	11.0	0	11;11	n	0.07	1	12.5	1	12;13	n	0.00	0	31.5	0	27;36	n	0.00	0	14.5	0	18;11	n	0.00	0	17.5	0	15;20	n	0.06	1	14.5	1	16;13	n	0.00	0	20.0	0	18;22	n	0.00	0	21.5	0	18;25	n	0.00	0	15.5	0	13;18	n	0.00	0	21.0	0	19;23	n	0.15	2	11.0	2	12;10	y	0.00	0	14.5	0	14;15	n	ENSMUSG00000035439.14	Haus8	chr8	protein_coding	4HAUS augmin-like complex, subunit 8
novel_NIR_19243	chr8	71715748;71718220	71718173;71724928	-	71715748	71724928	cassetteExon	ENSMUST00000134361.8	novel	-	-	-	-	-	-	0.00	0.0	3	0;0	3	n	0.00	0.0	2	0;0	2	n	1.00	3.0	0	3;3	0	y	0.00	0.0	1	0;0	1	n	0.00	0.0	2	0;0	2	n	0.00	0.0	4	0;0	4	n	0.00	0.0	1	0;0	1	n	0.00	0.0	2	0;0	2	n	0.00	0.0	5	0;0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035439.14	Haus8	chr8	protein_coding	4HAUS augmin-like complex, subunit 8
novel_NIR_19244	chr8	71715748;71718220	71718173;71724928	-	71715748;71721928	71721870;71724928	MXE	ENSMUST00000123495.8	novel	0.00	0.0	4.0	0;0	2;6	n	0.00	0.0	11.0	0;0	12;10	n	0.00	0.0	13.0	0;0	15;11	n	0.26	3.0	8.5	3;3	8;9	y	0.00	0.0	8.5	0;0	8;9	n	0.00	0.0	11.0	0;0	9;13	n	0.00	0.0	4.0	0;0	5;3	n	0.00	0.0	5.5	0;0	5;6	n	0.00	0.0	10.0	0;0	13;7	n	0.00	0.0	18.5	0;0	20;17	n	0.00	0.0	3.5	0;0	5;2	n	0.00	0.0	8.0	0;0	12;4	n	ENSMUSG00000035439.14	Haus8	chr8	protein_coding	4HAUS augmin-like complex, subunit 8
novel_NIR_19245	chr8	71787038;71789609	71789528;71793404	+	71787038;71791664	71791551;71793404	MXE	ENSMUST00000212935.2	novel	0.56	5.0	4.0	0;10	1;7	n	0.38	4.0	6.5	0;8	2;11	n	0.47	10.5	12.0	0;21	7;17	n	0.52	6.0	5.5	2;10	1;10	y	0.46	8.0	9.5	0;16	6;13	n	0.25	1.5	4.5	0;3	5;4	n	0.24	2.5	8.0	0;5	5;11	n	0.57	6.5	5.0	0;13	3;7	n	0.22	2.0	7.0	0;4	5;9	n	0.62	9.0	5.5	0;18	4;7	n	0.69	4.5	2.0	0;9	1;3	n	0.44	5.5	7.0	0;11	5;9	n	ENSMUSG00000004677.18	Myo9b	chr8	protein_coding	myosin IXb
novel_NIR_19246	chr8	71789609	71793404	+	71789609	71791551	3pMXE	ENSMUST00000212173.3	novel	0.83	10	2	10	2	y	0.73	8	3	8	3	y	0.84	21	4	21	4	y	0.67	10	5	10	5	y	0.73	16	6	16	6	y	0.60	3	2	3	2	y	0.71	5	2	5	2	y	0.68	13	6	13	6	y	0.40	4	6	4	6	y	0.72	18	7	18	7	y	0.82	9	2	9	2	y	0.69	11	5	11	5	y	ENSMUSG00000004677.18	Myo9b	chr8	protein_coding	myosin IXb
novel_NIR_19247	chr8	71789609	71793404	+	71791664	71793404	A5SS&ES	ENSMUST00000212935.2	novel	0.59	10	7	10	7	y	0.42	8	11	8	11	y	0.55	21	17	21	17	y	0.50	10	10	10	10	n	0.55	16	13	16	13	y	0.43	3	4	3	4	y	0.31	5	11	5	11	y	0.65	13	7	13	7	y	0.31	4	9	4	9	y	0.72	18	7	18	7	y	0.75	9	3	9	3	y	0.55	11	9	11	9	y	ENSMUSG00000004677.18	Myo9b	chr8	protein_coding	myosin IXb
novel_NIR_19248	chr8	71812096	71812408	+	71812096	71812202	A3SS	ENSMUST00000170242.8	novel	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.22	4	14	4	14	y	0.25	2	6	2	6	y	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.25	2	6	2	6	y	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.20	2	8	2	8	y	ENSMUSG00000004677.18	Myo9b	chr8	protein_coding	myosin IXb
novel_NIR_19249	chr8	71812096	71812408	+	71812096	71812308	A3SS	ENSMUST00000212935.2	novel	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.22	4	14	4	14	y	0.12	2	14	2	14	n	0.00	0	21	0	21	n	0.00	0	5	0	5	n	0.13	2	13	2	13	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.18	2	9	2	9	y	ENSMUSG00000004677.18	Myo9b	chr8	protein_coding	myosin IXb
novel_NIR_19250	chr8	71819722	71819818	+	71819722	71819879	A3SS	ENSMUST00000110053.9	novel	0.14	1	6	1	6	n	0.14	2	12	2	12	n	0.17	1	5	1	5	n	0.33	4	8	4	8	y	0.00	0	17	0	17	n	0.00	0	3	0	3	n	0.09	1	10	1	10	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.09	1	10	1	10	n	0.18	3	14	3	14	y	0.11	1	8	1	8	n	ENSMUSG00000002395.15	Use1	chr8	protein_coding	unconventional SNARE in the ER 1 homolog (S. cerevisiae)
novel_NIR_19251	chr8	71819722	71819823	+	71819722	71819879	A3SS	ENSMUST00000110053.9	novel	0.00	0	6	0	6	n	0.08	1	12	1	12	n	0.17	1	5	1	5	n	0.20	2	8	2	8	y	0.00	0	17	0	17	n	0.25	1	3	1	3	n	0.09	1	10	1	10	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	ENSMUSG00000002395.15	Use1	chr8	protein_coding	unconventional SNARE in the ER 1 homolog (S. cerevisiae)
novel_NIR_19252	chr8	71820013	71820175	+	71820013	71820142	A3SS	ENSMUST00000154550.8	novel	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000002395.15	Use1	chr8	protein_coding	unconventional SNARE in the ER 1 homolog (S. cerevisiae)
novel_NIR_19253	chr8	71821521	71821773	+	71821521	71821776	A3SS	ENSMUST00000110053.9	novel	0.11	25	197	25	197	n	0.15	33	182	33	182	y	0.12	28	210	28	210	n	0.11	17	144	17	144	n	0.11	29	242	29	242	n	0.16	24	129	24	129	y	0.13	37	251	37	251	n	0.17	25	118	25	118	y	0.07	13	166	13	166	n	0.18	39	182	39	182	y	0.12	34	241	34	241	n	0.11	27	228	27	228	n	ENSMUSG00000002395.15	Use1	chr8	protein_coding	unconventional SNARE in the ER 1 homolog (S. cerevisiae)
novel_NIR_19254	chr8	71827454	71828393	-	71828146	71828393	3pMXE	ENSMUST00000156270.2	novel	0.00	0	4	0	4	n	0.17	1	5	1	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	1.00	2	0	2	0	y	0.29	2	5	2	5	y	0.00	0	3	0	3	n	ENSMUSG00000002393.15	Nr2f6	chr8	protein_coding	nuclear receptor subfamily 2, group F, member 6
novel_NIR_19255	chr8	71827454	71828393	-	71828212	71828393	A3SS&ES	ENSMUST00000137734.8	novel	0.00	0	11	0	11	n	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.14	2	12	2	12	n	0.00	0	7	0	7	n	0.07	1	14	1	14	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.33	2	4	2	4	y	0.18	2	9	2	9	y	0.00	0	4	0	4	n	ENSMUSG00000002393.15	Nr2f6	chr8	protein_coding	nuclear receptor subfamily 2, group F, member 6
novel_NIR_19256	chr8	71827943	71828393	-	71828146	71828393	A3SS	ENSMUST00000156270.2	novel	0.00	0	4	0	4	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.71	5	2	5	2	y	0.75	3	1	3	1	y	-	-	-	-	-	-	0.20	1	4	1	4	n	0.25	1	3	1	3	n	0.33	2	4	2	4	y	1.00	4	0	4	0	y	0.00	0	5	0	5	n	0.40	2	3	2	3	y	ENSMUSG00000002393.15	Nr2f6	chr8	protein_coding	nuclear receptor subfamily 2, group F, member 6
novel_NIR_19257	chr8	71827943	71828393	-	71828212	71828393	A3SS&ES	ENSMUST00000137734.8	novel	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.56	5	4	5	4	y	0.20	3	12	3	12	y	0.00	0	7	0	7	n	0.07	1	14	1	14	n	0.25	1	3	1	3	n	0.40	2	3	2	3	y	0.50	4	4	4	4	y	0.00	0	9	0	9	n	0.33	2	4	2	4	y	ENSMUSG00000002393.15	Nr2f6	chr8	protein_coding	nuclear receptor subfamily 2, group F, member 6
novel_NIR_19258	chr8	71831127	71833497	-	71831171	71833497	A3SS	ENSMUST00000127443.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.33	1	2	1	2	n	0.71	5	2	5	2	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000002393.15	Nr2f6	chr8	protein_coding	nuclear receptor subfamily 2, group F, member 6
novel_NIR_19259	chr8	71841649	71842685	-	71841649	71842665	A5SS	ENSMUST00000212626.2	novel	0.33	3	6	3	6	y	0.22	2	7	2	7	y	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.12	2	15	2	15	n	0.00	0	3	0	3	n	0.15	2	11	2	11	y	0.33	2	4	2	4	y	0.00	0	7	0	7	n	0.17	1	5	1	5	n	0.00	0	7	0	7	n	0.20	3	12	3	12	y	ENSMUSG00000034911.9	Ushbp1	chr8	protein_coding	USH1 protein network component harmonin binding protein 1
novel_NIR_19260	chr8	71842843	71843285	-	71842829	71843285	A3SS	ENSMUST00000212626.2	novel	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.00	0	20	0	20	n	0.00	0	5	0	5	n	0.25	2	6	2	6	y	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	ENSMUSG00000034911.9	Ushbp1	chr8	protein_coding	USH1 protein network component harmonin binding protein 1
novel_NIR_19261	chr8	71852451	71854333	+	71852451	71852609	3pMXE	ENSMUST00000213093.2	novel	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.25	1	3	1	3	n	0.67	4	2	4	2	y	ENSMUSG00000031820.10	Babam1	chr8	protein_coding	BRISC and BRCA1 A complex member 1
novel_NIR_19262	chr8	71858382	71858831	+	71858741	71858831	5pMXE	ENSMUST00000119976.8	novel	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000046295.14	Ankle1	chr8	protein_coding	ankyrin repeat and LEM domain containing 1
novel_NIR_19263	chr8	71945580	71951850	+	71945580	71951799	A3SS	ENSMUST00000150969.8	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000007610.16	Gtpbp3	chr8	protein_coding	GTP binding protein 3
novel_NIR_19264	chr8	71951908	71952036	+	71951908	71951997	A3SS	ENSMUST00000150969.8	novel	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000007610.16	Gtpbp3	chr8	protein_coding	GTP binding protein 3
novel_NIR_19265	chr8	71995875	71996601	+	71995875	71997868	A3SS	ENSMUST00000212954.2	novel	0.09	1	10	1	10	n	0.19	3	13	3	13	y	0.18	2	9	2	9	y	0.05	1	21	1	21	n	0.24	4	13	4	13	y	0.33	3	6	3	6	y	0.00	0	12	0	12	n	0.10	1	9	1	9	n	0.33	2	4	2	4	y	0.13	2	13	2	13	n	0.07	1	14	1	14	n	0.14	2	12	2	12	n	ENSMUSG00000031813.9	Mvb12a	chr8	protein_coding	multivesicular body subunit 12A
novel_NIR_19266	chr8	71996767	71997870	+	71996767	71997868	A3SS	ENSMUST00000212326.2	novel	0.00	0	16	0	16	n	0.00	0	17	0	17	n	0.00	0	20	0	20	n	0.15	6	33	6	33	y	0.00	0	27	0	27	n	0.00	0	18	0	18	n	0.00	0	28	0	28	n	0.00	0	10	0	10	n	0.22	6	21	6	21	y	0.15	8	47	8	47	y	0.00	0	24	0	24	n	0.00	0	23	0	23	n	ENSMUSG00000031813.9	Mvb12a	chr8	protein_coding	multivesicular body subunit 12A
novel_NIR_19267	chr8	72023532	72032080	+	72023532	72032048	A3SS	ENSMUST00000212889.2	novel	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.18	2	9	2	9	y	0.00	0	2	0	2	n	0.05	1	18	1	18	n	0.00	0	4	0	4	n	0.08	1	11	1	11	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.00	0	17	0	17	n	ENSMUSG00000031808.8	Slc27a1	chr8	protein_coding	solute carrier family 27 (fatty acid transporter), member 1
novel_NIR_19268	chr8	72045516	72046728	+	72045432	72046728	A5SS	ENSMUST00000143441.2	novel	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.67	4	2	4	2	y	0.00	0	2	0	2	n	ENSMUSG00000031807.11	Pgls	chr8	protein_coding	6-phosphogluconolactonase
novel_NIR_19269	chr8	72045887	72046728	+	72045432	72046728	A5SS	ENSMUST00000143441.2	novel	1.00	2	0	2	0	y	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.33	3	6	3	6	y	0.00	0	1	0	1	n	0.00	0	9	0	9	n	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.50	2	2	2	2	y	0.33	1	2	1	2	n	ENSMUSG00000031807.11	Pgls	chr8	protein_coding	6-phosphogluconolactonase
novel_NIR_19270	chr8	72051852	72052513	+	72051852	72052714	A3SS	ENSMUST00000127626.8	novel	0.00	0	2	0	2	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	3	3	3	3	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000031807.11	Pgls	chr8	protein_coding	6-phosphogluconolactonase
novel_NIR_19271	chr8	72075474	72075853	+	72075474	72075682	A3SS	ENSMUST00000212216.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.75	6	2	6	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000034807.10	Colgalt1	chr8	protein_coding	collagen beta(1-O)galactosyltransferase 1
novel_NIR_19272	chr8	72134827	72134926	+	72134831	72134926	A5SS	ENSMUST00000110013.10	novel	0.15	7	39	7	39	y	0.12	4	28	4	28	n	0.16	8	42	8	42	y	0.10	6	56	6	56	n	0.16	8	42	8	42	y	0.10	3	28	3	28	n	0.18	10	47	10	47	y	0.18	5	23	5	23	y	0.07	2	26	2	26	n	0.17	11	55	11	55	y	0.11	3	25	3	25	n	0.09	5	53	5	53	n	ENSMUSG00000031805.18	Jak3	chr8	protein_coding	Janus kinase 3
novel_NIR_19273	chr8	72140844	72142816	+	72140806	72142816	A5SS	ENSMUST00000051995.14	novel	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.20	2	8	2	8	y	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	ENSMUSG00000031805.18	Jak3	chr8	protein_coding	Janus kinase 3
novel_NIR_19274	chr8	72140844	72142816	+	72142076	72142816	5pMXE	ENSMUST00000034261.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000079019.3	Insl3	chr8	protein_coding	insulin-like 3
novel_NIR_19275	chr8	72667092	72682046	+	72662582	72682046	A5SS	ENSMUST00000131544.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000066880.16	Zfp617	chr8	protein_coding	zinc finger protein 617
novel_NIR_19276	chr8	72667092	72682046	+	72667092	72667305	3pMXE	ENSMUST00000110002.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.67	2	1	2	1	y	0.00	0	4	0	4	n	0.50	1	1	1	1	n	0.67	4	2	4	2	y	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	ENSMUSG00000089857.10	Zfp882	chr8	protein_coding	zinc finger protein 882
novel_NIR_19277	chr8	72677028	72682046	+	72662582	72682046	A5SS	ENSMUST00000131544.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.60	3	2	3	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	ENSMUSG00000066880.16	Zfp617	chr8	protein_coding	zinc finger protein 617
novel_NIR_19278	chr8	72682172	72685863	+	72682172;72683042	72682982;72685863	ES	ENSMUST00000131544.8	novel	0.08	3	33.5	3	32;35	n	0.37	9	15.5	9	15;16	y	0.28	9	23.5	9	28;19	y	0.13	6	39.5	6	41;38	n	0.22	12	42.0	12	38;46	y	0.07	1	14.0	1	15;13	n	0.20	10	40.0	10	41;39	y	0.09	2	21.0	2	15;27	n	0.18	5	23.0	5	21;25	y	0.21	11	42.5	11	51;34	y	0.16	6	30.5	6	29;32	y	0.18	8	35.5	8	36;35	y	ENSMUSG00000066880.16	Zfp617	chr8	protein_coding	zinc finger protein 617
novel_NIR_19279	chr8	72966622	72976381	-	72966622	72966768	5pMXE	ENSMUST00000238973.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000074240.6	Cib3	chr8	protein_coding	calcium and integrin binding family member 3
novel_NIR_19280	chr8	72994311	72994475	+	72994311	73000483	A3SS	ENSMUST00000126885.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000003033.16	Ap1m1	chr8	protein_coding	adaptor-related protein complex AP-1, mu subunit 1
novel_NIR_19281	chr8	73095368	73097353	-	73095368	73121748	A5SS	ENSMUST00000212121.2	novel	0.20	1	4	1	4	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.33	3	6	3	6	y	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.38	3	5	3	5	y	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	ENSMUSG00000006276.11	Eps15l1	chr8	protein_coding	epidermal growth factor receptor pathway substrate 15-like 1
novel_NIR_19282	chr8	73095368	73099230	-	73095368	73099810	A5SS	ENSMUST00000163643.3	novel	0.00	0	18	0	18	n	0.25	2	6	2	6	y	0.00	0	18	0	18	n	0.00	0	20	0	20	n	0.00	0	17	0	17	n	0.00	0	6	0	6	n	0.00	0	32	0	32	n	0.00	0	16	0	16	n	0.00	0	18	0	18	n	0.00	0	17	0	17	n	0.00	0	22	0	22	n	0.00	0	25	0	25	n	ENSMUSG00000006276.11	Eps15l1	chr8	protein_coding	epidermal growth factor receptor pathway substrate 15-like 1
novel_NIR_19283	chr8	73095368	73099230	-	73095368	73121748	A5SS	ENSMUST00000212121.2	novel	0.00	0	4	0	4	n	0.20	2	8	2	8	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	ENSMUSG00000006276.11	Eps15l1	chr8	protein_coding	epidermal growth factor receptor pathway substrate 15-like 1
novel_NIR_19284	chr8	73095368	73112157	-	73095368	73121748	A5SS	ENSMUST00000212121.2	novel	0.20	1	4	1	4	n	0.20	2	8	2	8	y	0.56	5	4	5	4	y	0.33	3	6	3	6	y	0.54	7	6	7	6	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.38	3	5	3	5	y	0.38	3	5	3	5	y	0.25	1	3	1	3	n	0.20	3	12	3	12	y	0.29	4	10	4	10	y	ENSMUSG00000006276.11	Eps15l1	chr8	protein_coding	epidermal growth factor receptor pathway substrate 15-like 1
novel_NIR_19285	chr8	73095368	73112157	-	73095368;73100015	73099810;73112157	ES	ENSMUST00000163643.3	novel	0.06	1	16.5	1	18;15	n	0.24	2	6.5	2	6;7	y	0.25	5	15.0	5	18;12	y	0.20	3	12.0	3	20;4	y	0.30	7	16.5	7	17;16	y	0.00	0	6.0	0	6;6	n	0.00	0	20.0	0	32;8	n	0.18	3	14.0	3	16;12	y	0.18	3	13.5	3	18;9	y	0.07	1	14.0	1	17;11	n	0.18	3	14.0	3	22;6	y	0.16	4	20.5	4	25;16	y	ENSMUSG00000006276.11	Eps15l1	chr8	protein_coding	epidermal growth factor receptor pathway substrate 15-like 1
novel_NIR_19286	chr8	73125666	73126850	-	73125666	73126870	A5SS	ENSMUST00000163643.3	novel	0.00	0	22	0	22	n	0.08	1	12	1	12	n	0.00	0	19	0	19	n	0.17	4	19	4	19	y	0.12	3	22	3	22	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.09	1	10	1	10	n	0.00	0	14	0	14	n	0.05	1	20	1	20	n	0.00	0	12	0	12	n	0.03	1	29	1	29	n	ENSMUSG00000006276.11	Eps15l1	chr8	protein_coding	epidermal growth factor receptor pathway substrate 15-like 1
novel_NIR_19287	chr8	73199314	73203291	+	73199314	73203294	A3SS	ENSMUST00000064853.13	novel	0.11	1	8	1	8	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.20	2	8	2	8	y	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.60	3	2	3	2	y	0.00	0	5	0	5	n	0.22	2	7	2	7	y	0.00	0	6	0	6	n	ENSMUSG00000052794.14	1700030K09Rik	chr8	protein_coding	RIKEN cDNA 1700030K09 gene
novel_NIR_19288	chr8	73333563	73338544	+	73333563	73333804	A3SS&ES	ENSMUST00000212763.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.01	1	97	1	97	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.18	2	9	2	9	y	ENSMUSG00000031791.9	Tmem38a	chr8	protein_coding	transmembrane protein 38A
novel_NIR_19289	chr8	73333563	73338544	+	73333563;73335116	73335029;73338544	ES	ENSMUST00000211914.2	novel	0.00	0	1.5	0	0;3	n	0.00	0	2.0	0	0;4	n	0.00	0	2.5	0	0;5	n	0.00	0	5.5	0	1;10	n	0.00	0	6.5	0	0;13	n	0.00	0	5.0	0	0;10	n	0.02	1	43.0	1	1;85	n	0.00	0	2.0	0	0;4	n	0.00	0	1.0	0	0;2	n	0.00	0	2.5	0	1;4	n	0.00	0	3.5	0	2;5	n	0.22	2	7.0	2	3;11	y	ENSMUSG00000031791.9	Tmem38a	chr8	protein_coding	transmembrane protein 38A
novel_NIR_19290	chr8	75760455	75774610	+	75760455	75778136	A3SS	ENSMUST00000211869.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000042870.16	Tom1	chr8	protein_coding	target of myb1 trafficking protein
novel_NIR_19291	chr8	75760455	75774610	+	75760455	75778551	A3SS	ENSMUST00000212651.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000042870.16	Tom1	chr8	protein_coding	target of myb1 trafficking protein
novel_NIR_19292	chr8	75760455	75774610	+	75760455	75781205	A3SS	ENSMUST00000212388.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000042870.16	Tom1	chr8	protein_coding	target of myb1 trafficking protein
novel_NIR_19293	chr8	75778267	75778551	+	75760455	75778551	A5SS	ENSMUST00000212651.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000042870.16	Tom1	chr8	protein_coding	target of myb1 trafficking protein
novel_NIR_19294	chr8	75778267	75778551	+	75776896	75778551	A5SS	ENSMUST00000212299.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000042870.16	Tom1	chr8	protein_coding	target of myb1 trafficking protein
novel_NIR_19295	chr8	77912743	77937273	+	77881947	77937273	A5SS	ENSMUST00000148106.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031618.14	Nr3c2	chr8	protein_coding	nuclear receptor subfamily 3, group C, member 2
novel_NIR_19296	chr8	77912743	77937273	+	77912743;77914293	77914149;77937273	ES	ENSMUST00000109913.9	novel	0.00	0	18.5	0	12;25	n	0.00	0	8.0	0	5;11	n	0.00	0	6.5	0	5;8	n	0.00	0	10.5	0	4;17	n	0.00	0	24.0	0	21;27	n	0.00	0	3.5	0	2;5	n	0.15	3	17.0	3	14;20	y	0.00	0	7.0	0	6;8	n	0.00	0	7.5	0	6;9	n	0.00	0	15.5	0	13;18	n	0.00	0	10.0	0	10;10	n	0.00	0	30.5	0	27;34	n	ENSMUSG00000031618.14	Nr3c2	chr8	protein_coding	nuclear receptor subfamily 3, group C, member 2
novel_NIR_19297	chr8	79305386	79305848	+	79305386	79374641	A3SS	ENSMUST00000209643.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000031684.12	Slc10a7	chr8	protein_coding	solute carrier family 10 (sodium/bile acid cotransporter family), member 7
novel_NIR_19298	chr8	79423960	79425152	+	79423960	79425149	A3SS	ENSMUST00000211332.2	novel	0.00	0	20	0	20	n	0.00	0	12	0	12	n	0.00	0	32	0	32	n	0.00	0	21	0	21	n	0.04	1	22	1	22	n	0.00	0	22	0	22	n	0.00	0	13	0	13	n	0.00	0	22	0	22	n	0.22	2	7	2	7	y	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.05	1	19	1	19	n	ENSMUSG00000031684.12	Slc10a7	chr8	protein_coding	solute carrier family 10 (sodium/bile acid cotransporter family), member 7
novel_NIR_19299	chr8	79423960	79425152	+	79423960	79456247	A3SS	ENSMUST00000209490.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000031684.12	Slc10a7	chr8	protein_coding	solute carrier family 10 (sodium/bile acid cotransporter family), member 7
novel_NIR_19300	chr8	79539709	79539835	-	79539709	79547677	A5SS	ENSMUST00000051867.7	novel	0.00	0	25	0	25	n	0.00	0	23	0	23	n	0.03	1	36	1	36	n	0.10	2	18	2	18	n	0.00	0	37	0	37	n	0.00	0	7	0	7	n	0.05	1	19	1	19	n	0.09	2	20	2	20	n	0.06	1	15	1	15	n	0.08	2	24	2	24	n	0.00	0	27	0	27	n	0.22	7	25	7	25	y	ENSMUSG00000031683.17	Lsm6	chr8	protein_coding	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated
novel_NIR_19301	chr8	80008283	80021175	-	80008283	80021543	A5SS	ENSMUST00000048718.4	novel	0.38	5	8	5	8	y	0.14	1	6	1	6	n	0.00	0	9	0	9	n	0.24	4	13	4	13	y	0.08	1	12	1	12	n	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.33	2	4	2	4	y	0.60	3	2	3	2	y	0.14	2	12	2	12	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	ENSMUSG00000037022.4	Mmaa	chr8	protein_coding	methylmalonic aciduria (cobalamin deficiency) type A
novel_NIR_19302	chr8	80008283	80021175	-	80008283;80011075	80010838;80021175	ES	ENSMUST00000210231.2	novel	0.23	5	16.5	5	27;6	y	0.08	1	11.0	1	21;1	n	0.00	0	9.0	0	17;1	n	0.17	4	19.0	4	37;1	y	0.06	1	17.0	1	33;1	n	0.22	1	3.5	1	7;0	n	0.00	0	14.0	0	23;5	n	0.22	2	7.0	2	14;0	y	0.24	3	9.5	3	17;2	y	0.08	2	24.0	2	37;11	n	0.00	0	20.5	0	36;5	n	0.00	0	24.5	0	45;4	n	ENSMUSG00000037022.4	Mmaa	chr8	protein_coding	methylmalonic aciduria (cobalamin deficiency) type A
novel_NIR_19303	chr8	80011044	80021175	-	80011075	80021175	A3SS	ENSMUST00000210231.2	novel	0.62	10	6	10	6	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.88	7	1	7	1	y	0.50	1	1	1	1	n	-	-	-	-	-	-	0.17	1	5	1	5	n	1.00	3	0	3	0	y	0.33	1	2	1	2	n	0.21	3	11	3	11	y	0.50	5	5	5	5	y	0.60	6	4	6	4	y	ENSMUSG00000037022.4	Mmaa	chr8	protein_coding	methylmalonic aciduria (cobalamin deficiency) type A
novel_NIR_19304	chr8	80011075	80012106	-	80011075	80021175	A5SS	ENSMUST00000210231.2	novel	0.00	0	6	0	6	n	0.86	6	1	6	1	y	0.80	4	1	4	1	n	0.88	7	1	7	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.44	4	5	4	5	y	-	-	-	-	-	-	0.75	6	2	6	2	n	0.15	2	11	2	11	n	0.44	4	5	4	5	y	0.50	4	4	4	4	n	ENSMUSG00000037022.4	Mmaa	chr8	protein_coding	methylmalonic aciduria (cobalamin deficiency) type A
novel_NIR_19305	chr8	80011075	80021496	-	80011075	80021175	5pMXE	ENSMUST00000210231.2	novel	0.40	4	6	4	6	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.38	3	5	3	5	y	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.20	1	4	1	4	n	ENSMUSG00000037022.4	Mmaa	chr8	protein_coding	methylmalonic aciduria (cobalamin deficiency) type A
novel_NIR_19306	chr8	80011075;80012188	80012106;80021175	-	80011075	80021175	cassetteExon	ENSMUST00000210231.2	novel	0.14	1.0	6	0;2	6	n	0.75	3.0	1	6;0	1	n	0.71	2.5	1	4;1	1	n	0.78	3.5	1	7;0	1	n	0.33	0.5	1	0;1	1	n	1.00	1.5	0	0;3	0	n	0.29	2.0	5	4;0	5	n	1.00	0.5	0	0;1	0	n	0.69	4.5	2	6;3	2	y	0.12	1.5	11	2;1	11	n	0.29	2.0	5	4;0	5	n	0.47	3.5	4	4;3	4	y	ENSMUSG00000037022.4	Mmaa	chr8	protein_coding	methylmalonic aciduria (cobalamin deficiency) type A
novel_NIR_19307	chr8	80012188	80021175	-	80011075	80021175	A3SS	ENSMUST00000210231.2	novel	0.25	2	6	2	6	y	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	1.00	3	0	3	0	y	0.00	0	5	0	5	n	1.00	1	0	1	0	n	0.60	3	2	3	2	n	0.08	1	11	1	11	n	0.00	0	5	0	5	n	0.43	3	4	3	4	n	ENSMUSG00000037022.4	Mmaa	chr8	protein_coding	methylmalonic aciduria (cobalamin deficiency) type A
novel_NIR_19308	chr8	80386091	80386741	+	80386091	80387667	A3SS	ENSMUST00000173078.8	novel	0.12	1	7	1	7	n	0.25	1	3	1	3	n	0.00	0	24	0	24	n	0.17	2	10	2	10	y	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.17	1	5	1	5	n	0.00	0	15	0	15	n	ENSMUSG00000036990.14	Otud4	chr8	protein_coding	OTU domain containing 4
novel_NIR_19309	chr8	80438473	80439782	+	80438473	80439734	A3SS	ENSMUST00000048147.9	novel	0.40	2	3	2	3	y	0.17	1	5	1	5	n	0.75	3	1	3	1	y	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.60	3	2	3	2	y	0.00	0	2	0	2	n	1.00	4	0	4	0	y	0.89	8	1	8	1	y	0.50	2	2	2	2	y	1.00	3	0	3	0	y	ENSMUSG00000036977.9	Anapc10	chr8	protein_coding	anaphase promoting complex subunit 10
novel_NIR_19310	chr8	80438473	80439782	+	80438603	80439782	5pMXE	ENSMUST00000210812.2	novel	0.67	2	1	2	1	y	0.20	1	4	1	4	n	0.50	3	3	3	3	y	0.38	3	5	3	5	y	0.00	0	14	0	14	n	0.00	0	4	0	4	n	0.25	3	9	3	9	y	0.00	0	1	0	1	n	0.80	4	1	4	1	y	0.80	8	2	8	2	y	0.40	2	3	2	3	y	0.38	3	5	3	5	y	ENSMUSG00000036977.9	Anapc10	chr8	protein_coding	anaphase promoting complex subunit 10
novel_NIR_19311	chr8	80438603	80439734	+	80438473	80439734	A5SS	ENSMUST00000048147.9	novel	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000036977.9	Anapc10	chr8	protein_coding	anaphase promoting complex subunit 10
novel_NIR_19312	chr8	80438603	80439734	+	80438603	80439782	A3SS	ENSMUST00000210812.2	novel	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.40	2	3	2	3	y	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000036977.9	Anapc10	chr8	protein_coding	anaphase promoting complex subunit 10
novel_NIR_19313	chr8	80455879;80459441	80459410;80501561	+	80455879	80501561	cassetteExon	ENSMUST00000048147.9	novel	0.17	2.0	10	2;2	10	y	0.00	0.0	22	0;0	22	n	0.00	0.0	23	0;0	23	n	0.11	3.0	25	3;3	25	n	0.07	2.5	33	2;3	33	n	0.00	0.0	11	0;0	11	n	0.04	1.0	22	1;1	22	n	0.00	0.0	12	0;0	12	n	0.00	0.0	12	0;0	12	n	0.00	0.0	15	0;0	15	n	0.04	0.5	11	0;1	11	n	0.06	0.5	8	1;0	8	n	ENSMUSG00000036977.9	Anapc10	chr8	protein_coding	anaphase promoting complex subunit 10
novel_NIR_19314	chr8	80459441	80501561	+	80492013	80501561	5pMXE	ENSMUST00000210485.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000036977.9	Anapc10	chr8	protein_coding	anaphase promoting complex subunit 10
novel_NIR_19315	chr8	81527024	81605782	-	81527024	81557417	5pMXE	ENSMUST00000211018.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031714.10	Gab1	chr8	protein_coding	growth factor receptor bound protein 2-associated protein 1
novel_NIR_19316	chr8	81527024	81606151	-	81527024	81557417	5pMXE	ENSMUST00000211018.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031714.10	Gab1	chr8	protein_coding	growth factor receptor bound protein 2-associated protein 1
novel_NIR_19317	chr8	81725754	81727682	-	81725754;81727141	81727026;81727682	ES	ENSMUST00000211538.2	novel	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	ENSMUSG00000038250.10	Usp38	chr8	protein_coding	ubiquitin specific peptidase 38
novel_NIR_19318	chr8	82583078	82583321	+	82497553	82583321	A5SS	ENSMUST00000042529.14	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037940.18	Inpp4b	chr8	protein_coding	inositol polyphosphate-4-phosphatase, type II
novel_NIR_19319	chr8	82583078	82583321	+	82571135	82583321	A5SS	ENSMUST00000213285.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000037940.18	Inpp4b	chr8	protein_coding	inositol polyphosphate-4-phosphatase, type II
novel_NIR_19320	chr8	83106244	83129368	-	83106244	83125182	5pMXE	ENSMUST00000210885.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000031712.11	Il15	chr8	protein_coding	interleukin 15
novel_NIR_19321	chr8	83106244	83129368	-	83106244	83128274	5pMXE	ENSMUST00000209573.3	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000031712.11	Il15	chr8	protein_coding	interleukin 15
novel_NIR_19322	chr8	83106244	83129368	-	83106244	83128919	A5SS	ENSMUST00000034148.7	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000031712.11	Il15	chr8	protein_coding	interleukin 15
novel_NIR_19323	chr8	83106244	83129368	-	83106244	83128929	5pMXE	ENSMUST00000209363.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000031712.11	Il15	chr8	protein_coding	interleukin 15
novel_NIR_19324	chr8	83106244	83129368	-	83106244;83129033	83128919;83129368	ES	ENSMUST00000210472.2	novel	0.50	1	1.0	1	1;1	n	-	-	-	-	-	-	0.00	0	1.0	0	2;0	n	0.00	0	0.5	0	1;0	n	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	0.00	0	1.0	0	2;0	n	-	-	-	-	-	-	0.00	0	1.5	0	3;0	n	0.80	2	0.5	2	1;0	y	-	-	-	-	-	-	0.67	2	1.0	2	0;2	y	ENSMUSG00000031712.11	Il15	chr8	protein_coding	interleukin 15
novel_NIR_19325	chr8	83106244	83129598	-	83106244	83125182	5pMXE	ENSMUST00000210885.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031712.11	Il15	chr8	protein_coding	interleukin 15
novel_NIR_19326	chr8	83106244	83129598	-	83106244	83128274	5pMXE	ENSMUST00000209573.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031712.11	Il15	chr8	protein_coding	interleukin 15
novel_NIR_19327	chr8	83106244	83129598	-	83106244	83128919	A5SS	ENSMUST00000034148.7	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031712.11	Il15	chr8	protein_coding	interleukin 15
novel_NIR_19328	chr8	83106244	83129598	-	83106244	83128929	5pMXE	ENSMUST00000209363.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031712.11	Il15	chr8	protein_coding	interleukin 15
novel_NIR_19329	chr8	83496028	83497968	-	83496028	83499509	A5SS	ENSMUST00000211462.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031711.8	Zfp330	chr8	protein_coding	zinc finger protein 330
novel_NIR_19330	chr8	84057887	84058618	-	84057887	84058984	A5SS	ENSMUST00000177594.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035151.13	Elmod2	chr8	protein_coding	ELMO/CED-12 domain containing 2
novel_NIR_19331	chr8	84298532	84298642	-	84298532	84298631	A5SS	ENSMUST00000212652.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	21	0	21	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031708.18	Tecr	chr8	protein_coding	trans-2,3-enoyl-CoA reductase
novel_NIR_19332	chr8	84299952	84301107	-	84299917	84301107	A3SS	ENSMUST00000212630.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000031708.18	Tecr	chr8	protein_coding	trans-2,3-enoyl-CoA reductase
novel_NIR_19333	chr8	84300084	84301107	-	84299917	84301107	A3SS	ENSMUST00000212630.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000031708.18	Tecr	chr8	protein_coding	trans-2,3-enoyl-CoA reductase
novel_NIR_19334	chr8	84300547	84301107	-	84299917	84301107	A3SS	ENSMUST00000212630.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031708.18	Tecr	chr8	protein_coding	trans-2,3-enoyl-CoA reductase
novel_NIR_19335	chr8	84301151	84320969	-	84316930	84320969	A3SS&ES	ENSMUST00000212136.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	ENSMUSG00000031708.18	Tecr	chr8	protein_coding	trans-2,3-enoyl-CoA reductase
novel_NIR_19336	chr8	84301157	84308925	-	84301157	84334520	A5SS	ENSMUST00000211972.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000031708.18	Tecr	chr8	protein_coding	trans-2,3-enoyl-CoA reductase
novel_NIR_19337	chr8	84301157	84314620	-	84301157	84316812	A5SS	ENSMUST00000212136.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031708.18	Tecr	chr8	protein_coding	trans-2,3-enoyl-CoA reductase
novel_NIR_19338	chr8	84301157	84314620	-	84301157	84334520	A5SS	ENSMUST00000211972.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031708.18	Tecr	chr8	protein_coding	trans-2,3-enoyl-CoA reductase
novel_NIR_19339	chr8	84301157	84319565	-	84301157	84316812	A5SS&ES	ENSMUST00000212136.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031708.18	Tecr	chr8	protein_coding	trans-2,3-enoyl-CoA reductase
novel_NIR_19340	chr8	84301157	84319565	-	84301157	84334520	A5SS	ENSMUST00000211972.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031708.18	Tecr	chr8	protein_coding	trans-2,3-enoyl-CoA reductase
novel_NIR_19341	chr8	84319625	84320969	-	84316930	84320969	A3SS	ENSMUST00000212136.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000031708.18	Tecr	chr8	protein_coding	trans-2,3-enoyl-CoA reductase
novel_NIR_19342	chr8	84659744	84660355	-	84660201	84660355	A3SS	ENSMUST00000238640.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.25	2	6	2	6	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000074219.4	Gm10644	chr8	lncRNA	predicted gene 10644
novel_NIR_19343	chr8	84659744	84660355	-	84660252	84660355	3pMXE	ENSMUST00000238427.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000074219.4	Gm10644	chr8	lncRNA	predicted gene 10644
novel_NIR_19344	chr8	84661867	84662361	-	84661235	84662361	A3SS	ENSMUST00000238427.2	novel	0.33	1	2	1	2	n	0.67	2	1	2	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.20	1	4	1	4	n	0.50	3	3	3	3	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	0.00	0	3	0	3	n	ENSMUSG00000074219.4	Gm10644	chr8	lncRNA	predicted gene 10644
novel_NIR_19345	chr8	84661867	84662361	-	84661699	84662361	A3SS	ENSMUST00000098595.3	novel	1.00	1	0	1	0	n	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.17	1	5	1	5	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.50	2	2	2	2	y	0.44	4	5	4	5	y	0.00	0	4	0	4	n	ENSMUSG00000074219.4	Gm10644	chr8	lncRNA	predicted gene 10644
novel_NIR_19346	chr8	84793677	84806492	+	84793677;84800698	84800360;84806492	ES	ENSMUST00000211046.2	novel	0.36	2	3.5	2	3;4	y	0.00	0	2.5	0	2;3	n	0.00	0	3.0	0	2;4	n	0.00	0	7.0	0	8;6	n	0.12	1	7.5	1	9;6	n	0.00	0	2.0	0	0;4	n	0.00	0	3.0	0	0;6	n	0.00	0	1.5	0	2;1	n	0.00	0	1.0	0	2;0	n	0.00	0	2.5	0	2;3	n	0.00	0	3.5	0	2;5	n	0.50	2	2.0	2	2;2	y	ENSMUSG00000031706.8	Rfx1	chr8	protein_coding	regulatory factor X, 1 (influences HLA class II expression)
novel_NIR_19347	chr8	84811524	84812202	+	84810803	84812202	A5SS	ENSMUST00000211046.2	novel	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.15	2	11	2	11	y	0.00	0	21	0	21	n	0.00	0	24	0	24	n	0.00	0	8	0	8	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.00	0	18	0	18	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	26	0	26	n	ENSMUSG00000031706.8	Rfx1	chr8	protein_coding	regulatory factor X, 1 (influences HLA class II expression)
novel_NIR_19348	chr8	84825297	84825387	-	84825299	84825387	A3SS	ENSMUST00000041367.9	novel	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	22	0	22	n	0.00	0	7	0	7	n	0.00	0	16	0	16	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	17	0	17	n	0.18	2	9	2	9	y	0.00	0	14	0	14	n	ENSMUSG00000037103.9	Dcaf15	chr8	protein_coding	DDB1 and CUL4 associated factor 15
novel_NIR_19349	chr8	84855355	84855731	+	84855355	84855893	A3SS	ENSMUST00000093380.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000012889.9	Podnl1	chr8	protein_coding	podocan-like 1
novel_NIR_19350	chr8	84976464	84980492	-	84977771	84980492	3pMXE	ENSMUST00000125498.2	novel	0.20	1	4	1	4	n	0.50	5	5	5	5	y	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.57	4	3	4	3	y	-	-	-	-	-	-	0.50	3	3	3	3	y	-	-	-	-	-	-	0.43	3	4	3	4	y	0.40	4	6	4	6	y	0.00	0	8	0	8	n	0.40	2	3	2	3	y	ENSMUSG00000004996.10	Mri1	chr8	protein_coding	methylthioribose-1-phosphate isomerase 1
novel_NIR_19351	chr8	85403881	85410408	-	85403881	85413677	A5SS	ENSMUST00000238301.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000001910.6	Nacc1	chr8	protein_coding	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing
novel_NIR_19352	chr8	85403881	85410408	-	85403881	85413998	A5SS	ENSMUST00000238449.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000001910.6	Nacc1	chr8	protein_coding	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing
novel_NIR_19353	chr8	85403881	85410408	-	85403881	85414019	A5SS	ENSMUST00000238687.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000001910.6	Nacc1	chr8	protein_coding	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing
novel_NIR_19354	chr8	85403881	85414144	-	85403881	85413677	5pMXE	ENSMUST00000238301.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000001910.6	Nacc1	chr8	protein_coding	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing
novel_NIR_19355	chr8	85403881	85414144	-	85403881	85413998	A5SS	ENSMUST00000238449.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000001910.6	Nacc1	chr8	protein_coding	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing
novel_NIR_19356	chr8	85403881	85414144	-	85403881	85414019	A5SS	ENSMUST00000238687.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000001910.6	Nacc1	chr8	protein_coding	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing
novel_NIR_19357	chr8	85433851	85434289	-	85426848	85434289	A3SS	ENSMUST00000148644.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000001911.17	Nfix	chr8	protein_coding	nuclear factor I/X
novel_NIR_19358	chr8	85433851	85434289	-	85431517	85434289	A3SS	ENSMUST00000148746.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000001911.17	Nfix	chr8	protein_coding	nuclear factor I/X
novel_NIR_19359	chr8	85498944	85508134	-	85498944	85499983	5pMXE	ENSMUST00000109764.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000001911.17	Nfix	chr8	protein_coding	nuclear factor I/X
novel_NIR_19360	chr8	85594277	85594348	+	85594277	85594382	A3SS	ENSMUST00000109754.2	novel	0.29	4	10	4	10	y	0.25	1	3	1	3	n	1.00	4	0	4	0	y	1.00	5	0	5	0	y	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.60	3	2	3	2	y	1.00	1	0	1	0	n	0.20	1	4	1	4	n	1.00	2	0	2	0	y	ENSMUSG00000003808.19	Farsa	chr8	protein_coding	phenylalanyl-tRNA synthetase, alpha subunit
novel_NIR_19361	chr8	85620209	85629318	+	85628744	85629318	5pMXE	ENSMUST00000067060.10	novel	0.60	3	2	3	2	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000054191.10	Klf1	chr8	protein_coding	Kruppel-like factor 1 (erythroid)
novel_NIR_19362	chr8	85620290	85629318	+	85628744	85629318	5pMXE	ENSMUST00000067060.10	novel	0.00	0	2	0	2	n	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.20	1	4	1	4	n	ENSMUSG00000054191.10	Klf1	chr8	protein_coding	Kruppel-like factor 1 (erythroid)
novel_NIR_19363	chr8	85626593	85629318	+	85628744	85629318	5pMXE	ENSMUST00000067060.10	novel	0.60	3	2	3	2	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	1.00	5	0	5	0	y	0.60	3	2	3	2	y	1.00	1	0	1	0	n	0.78	7	2	7	2	y	0.67	2	1	2	1	y	0.33	1	2	1	2	n	0.86	6	1	6	1	y	0.50	2	2	2	2	y	0.60	6	4	6	4	y	ENSMUSG00000054191.10	Klf1	chr8	protein_coding	Kruppel-like factor 1 (erythroid)
novel_NIR_19364	chr8	85640157	85640600	+	85640157	85640691	A3SS	ENSMUST00000128400.2	novel	0.09	2	20	2	20	n	0.11	3	25	3	25	n	0.34	11	21	11	21	y	0.21	3	11	3	11	y	0.12	4	30	4	30	n	0.09	2	20	2	20	n	0.21	5	19	5	19	y	0.09	2	21	2	21	n	0.18	5	23	5	23	y	0.13	4	27	4	27	n	0.12	3	23	3	23	n	0.06	2	31	2	31	n	ENSMUSG00000003812.14	Dnase2a	chr8	protein_coding	deoxyribonuclease II alpha
novel_NIR_19365	chr8	85640157	85640600	+	85640157	85647023	A3SS	ENSMUST00000148573.2	novel	0.12	2	14	2	14	n	0.16	3	16	3	16	y	0.41	11	16	11	16	y	0.16	3	16	3	16	y	0.10	4	37	4	37	n	0.22	2	7	2	7	y	0.15	5	28	5	28	y	0.17	2	10	2	10	y	0.24	5	16	5	16	y	0.14	4	25	4	25	n	0.11	3	25	3	25	n	0.06	2	33	2	33	n	ENSMUSG00000003812.14	Dnase2a	chr8	protein_coding	deoxyribonuclease II alpha
novel_NIR_19366	chr8	85640157	85647000	+	85640157	85640691	3pMXE	ENSMUST00000128400.2	novel	0.00	0	20	0	20	n	0.00	0	25	0	25	n	0.05	1	21	1	21	n	0.15	2	11	2	11	y	0.12	4	30	4	30	n	0.05	1	20	1	20	n	0.00	0	19	0	19	n	0.00	0	21	0	21	n	0.00	0	23	0	23	n	0.07	2	27	2	27	n	0.04	1	23	1	23	n	0.11	4	31	4	31	n	ENSMUSG00000003812.14	Dnase2a	chr8	protein_coding	deoxyribonuclease II alpha
novel_NIR_19367	chr8	85695651	85696869	+	85696637	85696869	5pMXE	ENSMUST00000109733.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000005161.16	Prdx2	chr8	protein_coding	peroxiredoxin 2
novel_NIR_19368	chr8	85696013	85696351	-	85694497	85696351	A3SS	ENSMUST00000140561.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000052926.17	Rnaseh2a	chr8	protein_coding	ribonuclease H2, large subunit
novel_NIR_19369	chr8	85724920	85727784	+	85725567	85727784	5pMXE	ENSMUST00000209652.2	novel	0.00	0	11	0	11	n	0.19	4	17	4	17	y	0.20	1	4	1	4	n	0.15	2	11	2	11	y	0.13	3	20	3	20	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.10	1	9	1	9	n	0.08	1	11	1	11	n	0.06	1	17	1	17	n	0.00	0	16	0	16	n	0.14	1	6	1	6	n	ENSMUSG00000052566.9	Hook2	chr8	protein_coding	hook microtubule tethering protein 2
novel_NIR_19370	chr8	85727866	85727953	+	85727866	85727950	A3SS	ENSMUST00000209764.2	novel	0.17	15	75	15	75	y	0.12	11	84	11	84	n	0.09	8	85	8	85	n	0.19	17	74	17	74	y	0.20	20	82	20	82	y	0.32	10	21	10	21	y	0.16	16	83	16	83	y	0.10	4	38	4	38	n	0.17	14	68	14	68	y	0.19	22	94	22	94	y	0.17	17	83	17	83	y	0.15	16	90	16	90	y	ENSMUSG00000052566.9	Hook2	chr8	protein_coding	hook microtubule tethering protein 2
novel_NIR_19371	chr8	85746534	85750807	-	85746679	85750807	A3SS	ENSMUST00000209834.2	novel	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.40	2	3	2	3	y	ENSMUSG00000052456.10	Get3	chr8	protein_coding	guided entry of tail-anchored proteins factor 3, ATPase
novel_NIR_19372	chr8	85762178	85764964	+	85763606	85764964	5pMXE	ENSMUST00000093360.12	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.12	2	15	2	15	n	0.20	1	4	1	4	n	0.11	1	8	1	8	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.25	3	9	3	9	y	ENSMUSG00000031691.15	Tnpo2	chr8	protein_coding	transportin 2 (importin 3, karyopherin beta 2b)
novel_NIR_19373	chr8	85762178	85765007	+	85763920	85765007	5pMXE	ENSMUST00000211601.2	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	4	2	4	2	y	-	-	-	-	-	-	1.00	2	0	2	0	y	0.50	1	1	1	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	3	3	3	3	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000031691.15	Tnpo2	chr8	protein_coding	transportin 2 (importin 3, karyopherin beta 2b)
novel_NIR_19374	chr8	85762178	85765007	+	85764269	85765007	5pMXE	ENSMUST00000210945.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000031691.15	Tnpo2	chr8	protein_coding	transportin 2 (importin 3, karyopherin beta 2b)
novel_NIR_19375	chr8	85763606	85765007	+	85763606	85764964	A3SS	ENSMUST00000093360.12	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	15	0	15	n	0.43	3	4	3	4	y	0.33	4	8	4	8	y	0.00	0	2	0	2	n	0.43	3	4	3	4	y	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.50	2	2	2	2	y	0.00	0	9	0	9	n	ENSMUSG00000031691.15	Tnpo2	chr8	protein_coding	transportin 2 (importin 3, karyopherin beta 2b)
novel_NIR_19376	chr8	85763606	85765007	+	85763920	85765007	5pMXE	ENSMUST00000211601.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.60	3	2	3	2	y	1.00	4	0	4	0	y	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000031691.15	Tnpo2	chr8	protein_coding	transportin 2 (importin 3, karyopherin beta 2b)
novel_NIR_19377	chr8	85763606	85765007	+	85764269	85765007	5pMXE	ENSMUST00000210945.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000031691.15	Tnpo2	chr8	protein_coding	transportin 2 (importin 3, karyopherin beta 2b)
novel_NIR_19378	chr8	85811132	85811237	+	85811132	85811270	A3SS	ENSMUST00000209264.2	novel	0.18	13	61	13	61	y	0.08	4	46	4	46	n	0.10	8	76	8	76	n	0.07	11	140	11	140	n	0.10	10	95	10	95	n	0.06	2	33	2	33	n	0.09	9	91	9	91	n	0.15	10	57	10	57	y	0.16	13	66	13	66	y	0.18	17	79	17	79	y	0.11	10	77	10	77	n	0.12	14	99	14	99	n	ENSMUSG00000005142.11	Man2b1	chr8	protein_coding	mannosidase 2, alpha B1
novel_NIR_19379	chr8	85811146	85811270	+	85810117	85811270	A5SS	ENSMUST00000209361.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000005142.11	Man2b1	chr8	protein_coding	mannosidase 2, alpha B1
novel_NIR_19380	chr8	85837668	85838839	-	85837671	85838839	A3SS	ENSMUST00000211109.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000074194.5	Zfp791	chr8	protein_coding	zinc finger protein 791
novel_NIR_19381	chr8	86021101	86021488	-	86018313	86021488	A3SS	ENSMUST00000211154.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031696.10	Vps35	chr8	protein_coding	VPS35 retromer complex component
novel_NIR_19382	chr8	86087202	86118890	-	86087202	86091318	5pMXE	ENSMUST00000034133.14	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000031698.15	Mylk3	chr8	protein_coding	myosin light chain kinase 3
novel_NIR_19383	chr8	86087202	86118890	-	86087202	86091507	5pMXE	ENSMUST00000121972.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000031698.15	Mylk3	chr8	protein_coding	myosin light chain kinase 3
novel_NIR_19384	chr8	86087202	86118890	-	86087202	86107488	5pMXE	ENSMUST00000122452.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000031698.15	Mylk3	chr8	protein_coding	myosin light chain kinase 3
novel_NIR_19385	chr8	86087202	86118890	-	86087202	86112737	5pMXE	ENSMUST00000137290.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000031698.15	Mylk3	chr8	protein_coding	myosin light chain kinase 3
novel_NIR_19386	chr8	86232358	86235808	+	86232496	86235808	A5SS	ENSMUST00000132932.8	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.17	2	10	2	10	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000031700.12	Gpt2	chr8	protein_coding	glutamic pyruvate transaminase (alanine aminotransferase) 2
novel_NIR_19387	chr8	86328811	86336973	+	86332290	86336973	5pMXE	ENSMUST00000211727.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000109731.2	Gm45425	chr8	lncRNA	predicted gene 45425
novel_NIR_19388	chr8	86567686	86602263	+	86567686;86569741	86569650;86602263	ES	ENSMUST00000160611.8	novel	0.00	0	1.5	0	0;3	n	1.00	1	0.0	1	0;0	n	0.00	0	4.5	0	0;9	n	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	0.00	0	2.0	0	2;2	n	0.57	2	1.5	2	0;3	y	0.00	0	2.0	0	0;4	n	0.00	0	0.5	0	0;1	n	0.00	0	1.0	0	0;2	n	0.00	0	1.5	0	0;3	n	0.00	0	1.0	0	0;2	n	ENSMUSG00000036879.16	Phkb	chr8	protein_coding	phosphorylase kinase beta
novel_NIR_19389	chr8	86567686	86602263	+	86567732	86602263	A5SS	ENSMUST00000161850.8	novel	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.06	1	17	1	17	n	0.00	0	6	0	6	n	0.29	2	5	2	5	y	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	ENSMUSG00000036879.16	Phkb	chr8	protein_coding	phosphorylase kinase beta
novel_NIR_19390	chr8	86567686	86602263	+	86569741	86602263	A5SS&ES	ENSMUST00000159716.8	novel	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.00	0	9	0	9	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000036879.16	Phkb	chr8	protein_coding	phosphorylase kinase beta
novel_NIR_19391	chr8	86567732	86601646	+	86567732	86569633	A3SS&ES	ENSMUST00000053771.14	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.50	3	3	3	3	n	1.00	3	0	3	0	y	0.43	3	4	3	4	n	0.40	2	3	2	3	y	0.00	0	1	0	1	n	1.00	2	0	2	0	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	-	-	-	-	-	-	ENSMUSG00000036879.16	Phkb	chr8	protein_coding	phosphorylase kinase beta
novel_NIR_19392	chr8	86567732	86601646	+	86567732	86569650	A3SS&ES	ENSMUST00000159716.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	3	0	3	0	n	1.00	3	0	3	0	y	1.00	3	0	3	0	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.67	2	1	2	1	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000036879.16	Phkb	chr8	protein_coding	phosphorylase kinase beta
novel_NIR_19393	chr8	86567732	86601646	+	86567732	86602263	A3SS	ENSMUST00000161850.8	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.21	3	11	3	11	n	0.15	3	17	3	17	y	0.33	3	6	3	6	n	0.29	2	5	2	5	y	0.00	0	9	0	9	n	0.33	2	4	2	4	n	0.00	0	13	0	13	n	0.12	1	7	1	7	n	0.00	0	14	0	14	n	ENSMUSG00000036879.16	Phkb	chr8	protein_coding	phosphorylase kinase beta
novel_NIR_19394	chr8	86567732;86601707	86601646;86602263	+	86567732	86602263	cassetteExon	ENSMUST00000161850.8	novel	0.00	0.0	2	0;0	2	n	0.33	0.5	1	0;1	1	n	0.07	0.5	7	0;1	7	n	0.24	3.5	11	3;4	11	y	0.08	1.5	17	3;0	17	n	0.29	2.5	6	3;2	6	y	0.17	1.0	5	2;0	5	n	0.00	0.0	9	0;0	9	n	0.33	2.0	4	2;2	4	y	0.00	0.0	13	0;0	13	n	0.07	0.5	7	1;0	7	n	0.00	0.0	14	0;0	14	n	ENSMUSG00000036879.16	Phkb	chr8	protein_coding	phosphorylase kinase beta
novel_NIR_19395	chr8	86567732;86601707	86601646;86602263	+	86567732;86569741	86569633;86602263	MXE	ENSMUST00000053771.14	novel	0.00	0.0	2.0	0;0	1;3	n	1.00	0.5	0.0	0;1	0;0	n	0.06	0.5	7.5	0;1	6;9	n	0.70	3.5	1.5	3;4	3;0	y	1.00	1.5	0.0	3;0	0;0	n	0.45	2.5	3.0	3;2	4;2	y	0.25	1.0	3.0	2;0	3;3	n	0.00	0.0	2.5	0;0	1;4	n	0.80	2.0	0.5	2;2	0;1	y	0.00	0.0	2.0	0;0	2;2	n	0.14	0.5	3.0	1;0	3;3	n	0.00	0.0	1.0	0;0	0;2	n	ENSMUSG00000036879.16	Phkb	chr8	protein_coding	phosphorylase kinase beta
novel_NIR_19396	chr8	86567732;86601707	86601646;86602263	+	86567732;86569741	86569650;86602263	MXE	ENSMUST00000159716.8	novel	0.00	0.0	1.5	0;0	0;3	n	1.00	0.5	0.0	0;1	0;0	n	0.09	0.5	5.0	0;1	1;9	n	1.00	3.5	0.0	3;4	0;0	y	1.00	1.5	0.0	3;0	0;0	n	0.71	2.5	1.0	3;2	0;2	y	0.29	1.0	2.5	2;0	2;3	n	0.00	0.0	2.0	0;0	0;4	n	0.67	2.0	1.0	2;2	1;1	y	0.00	0.0	1.5	0;0	1;2	n	0.20	0.5	2.0	1;0	1;3	n	0.00	0.0	1.0	0;0	0;2	n	ENSMUSG00000036879.16	Phkb	chr8	protein_coding	phosphorylase kinase beta
novel_NIR_19397	chr8	86569741;86601707	86601646;86602263	+	86569741	86602263	cassetteExon	ENSMUST00000159716.8	novel	0.00	0.0	3	0;0	3	n	1.00	0.5	0	0;1	0	n	0.10	1.0	9	1;1	9	n	1.00	4.0	0	4;4	0	y	-	-	-	-	-	-	0.33	1.0	2	0;2	2	n	0.00	0.0	3	0;0	3	n	0.11	0.5	4	1;0	4	n	0.50	1.0	1	0;2	1	n	0.00	0.0	2	0;0	2	n	0.00	0.0	3	0;0	3	n	0.00	0.0	2	0;0	2	n	ENSMUSG00000036879.16	Phkb	chr8	protein_coding	phosphorylase kinase beta
novel_NIR_19398	chr8	86569741;86601707	86601646;86602263	+	86569741;86575360	86575303;86602263	MXE	ENSMUST00000162981.2	novel	0.00	0.0	2.5	0;0	4;1	n	0.33	0.5	1.0	0;1	1;1	n	0.18	1.0	4.5	1;1	4;5	n	0.80	4.0	1.0	4;4	1;1	y	0.00	0.0	1.0	0;0	0;2	n	0.67	1.0	0.5	0;2	0;1	n	-	-	-	-	-	-	0.50	0.5	0.5	1;0	0;1	n	0.67	1.0	0.5	0;2	0;1	n	0.00	0.0	2.0	0;0	1;3	n	0.00	0.0	1.5	0;0	2;1	n	0.00	0.0	2.0	0;0	2;2	n	ENSMUSG00000036879.16	Phkb	chr8	protein_coding	phosphorylase kinase beta
novel_NIR_19399	chr8	86601707	86602263	+	86569741	86602263	A5SS	ENSMUST00000160611.8	novel	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.10	1	9	1	9	n	1.00	4	0	4	0	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000036879.16	Phkb	chr8	protein_coding	phosphorylase kinase beta
novel_NIR_19400	chr8	86601707	86602263	+	86575360	86602263	A5SS	ENSMUST00000162981.2	novel	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.17	1	5	1	5	n	0.80	4	1	4	1	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000036879.16	Phkb	chr8	protein_coding	phosphorylase kinase beta
novel_NIR_19401	chr8	86750967	86751827	+	86750967	86753086	A3SS	ENSMUST00000053771.14	novel	0.15	3	17	3	17	y	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.30	6	14	6	14	n	0.13	4	26	4	26	n	0.00	0	14	0	14	n	0.22	6	21	6	21	n	0.16	3	16	3	16	y	0.50	6	6	6	6	y	0.27	6	16	6	16	y	0.43	3	4	3	4	y	0.38	8	13	8	13	y	ENSMUSG00000036879.16	Phkb	chr8	protein_coding	phosphorylase kinase beta
novel_NIR_19402	chr8	86750967	86756111	+	86750967;86753176	86753086;86756111	ES	ENSMUST00000053771.14	novel	0.04	1	24.0	1	17;31	n	0.06	1	15.5	1	12;19	n	0.15	3	17.0	3	15;19	y	0.26	6	17.0	6	14;20	y	0.00	0	29.0	0	26;32	n	0.07	1	14.0	1	14;14	n	0.00	0	32.0	0	21;43	n	0.00	0	13.5	0	16;11	n	0.24	4	12.5	4	6;19	y	0.00	0	22.0	0	16;28	n	0.10	1	9.0	1	4;14	n	0.11	2	16.5	2	13;20	n	ENSMUSG00000036879.16	Phkb	chr8	protein_coding	phosphorylase kinase beta
novel_NIR_19403	chr8	86750967;86751917	86751827;86756111	+	86750967;86753176	86753086;86756111	MXE	ENSMUST00000053771.14	novel	0.06	1.5	24.0	3;0	17;31	n	0.14	2.5	15.5	0;5	12;19	n	0.00	0.0	17.0	0;0	15;19	n	0.17	3.5	17.0	6;1	14;20	n	0.12	4.0	29.0	4;4	26;32	n	0.00	0.0	14.0	0;0	14;14	n	0.15	5.5	32.0	6;5	21;43	y	0.10	1.5	13.5	3;0	16;11	n	0.19	3.0	12.5	6;0	6;19	n	0.12	3.0	22.0	6;0	16;28	n	0.14	1.5	9.0	3;0	4;14	n	0.20	4.0	16.5	8;0	13;20	n	ENSMUSG00000036879.16	Phkb	chr8	protein_coding	phosphorylase kinase beta
novel_NIR_19404	chr8	86751917	86756111	+	86753176	86756111	A5SS&ES	ENSMUST00000053771.14	novel	0.00	0	31	0	31	n	0.21	5	19	5	19	y	0.00	0	19	0	19	n	0.05	1	20	1	20	n	0.11	4	32	4	32	n	0.00	0	14	0	14	n	0.10	5	43	5	43	n	0.00	0	11	0	11	n	0.00	0	19	0	19	n	0.00	0	28	0	28	n	0.00	0	14	0	14	n	0.00	0	20	0	20	n	ENSMUSG00000036879.16	Phkb	chr8	protein_coding	phosphorylase kinase beta
novel_NIR_19405	chr8	8731467	8731852	-	8731467	8731841	A5SS	ENSMUST00000207817.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040459.12	Arglu1	chr8	protein_coding	arginine and glutamate rich 1
novel_NIR_19406	chr8	8731467	8731852	-	8731467	8731891	A5SS	ENSMUST00000207070.2	novel	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.25	2	6	2	6	y	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000040459.12	Arglu1	chr8	protein_coding	arginine and glutamate rich 1
novel_NIR_19407	chr8	87351044	87378804	+	87378267	87378804	5pMXE	ENSMUST00000121673.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000047866.21	Lonp2	chr8	protein_coding	lon peptidase 2, peroxisomal
novel_NIR_19408	chr8	87568270	87570578	-	87538284	87570578	A3SS	ENSMUST00000209389.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000031652.12	N4bp1	chr8	protein_coding	NEDD4 binding protein 1
novel_NIR_19409	chr8	88856432	88856980	+	88856432	88856969	A3SS	ENSMUST00000131891.8	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000036810.17	Cnep1r1	chr8	protein_coding	CTD nuclear envelope phosphatase 1 regulatory subunit 1
novel_NIR_19410	chr8	88857029	88857351	+	88857029	88857345	A3SS	ENSMUST00000117775.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036810.17	Cnep1r1	chr8	protein_coding	CTD nuclear envelope phosphatase 1 regulatory subunit 1
novel_NIR_19411	chr8	88857029	88857351	+	88857029	88857364	A3SS	ENSMUST00000131891.8	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	ENSMUSG00000036810.17	Cnep1r1	chr8	protein_coding	CTD nuclear envelope phosphatase 1 regulatory subunit 1
novel_NIR_19412	chr8	88857029	88858861	+	88857029	88857345	3pMXE	ENSMUST00000117775.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000036810.17	Cnep1r1	chr8	protein_coding	CTD nuclear envelope phosphatase 1 regulatory subunit 1
novel_NIR_19413	chr8	88857029	88858861	+	88857029	88857364	3pMXE	ENSMUST00000131891.8	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.60	3	2	3	2	y	0.25	1	3	1	3	n	0.50	2	2	2	2	y	1.00	1	0	1	0	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	ENSMUSG00000036810.17	Cnep1r1	chr8	protein_coding	CTD nuclear envelope phosphatase 1 regulatory subunit 1
novel_NIR_19414	chr8	88857029	88859338	+	88857029	88857345	3pMXE	ENSMUST00000117775.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036810.17	Cnep1r1	chr8	protein_coding	CTD nuclear envelope phosphatase 1 regulatory subunit 1
novel_NIR_19415	chr8	88857029	88859338	+	88857029	88857364	3pMXE	ENSMUST00000131891.8	novel	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	ENSMUSG00000036810.17	Cnep1r1	chr8	protein_coding	CTD nuclear envelope phosphatase 1 regulatory subunit 1
novel_NIR_19416	chr8	88925941	88926654	+	88925941	88926559	A3SS	ENSMUST00000066748.10	novel	1.00	1	0	1	0	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000036779.13	Tent4b	chr8	protein_coding	terminal nucleotidyltransferase 4B
novel_NIR_19417	chr8	88925941	88926654	+	88925941	88926585	A3SS	ENSMUST00000118952.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036779.13	Tent4b	chr8	protein_coding	terminal nucleotidyltransferase 4B
novel_NIR_19418	chr8	88981901	88989562	+	88981901	88983727	3pMXE	ENSMUST00000066748.10	novel	0.02	1	40	1	40	n	0.19	10	43	10	43	y	0.17	14	69	14	69	y	0.12	11	83	11	83	n	0.04	5	109	5	109	n	0.11	6	51	6	51	n	0.05	4	77	4	77	n	0.10	7	61	7	61	n	0.11	8	68	8	68	n	0.06	6	100	6	100	n	0.11	7	57	7	57	n	0.08	6	72	6	72	n	ENSMUSG00000036779.13	Tent4b	chr8	protein_coding	terminal nucleotidyltransferase 4B
novel_NIR_19419	chr8	89022307	89025403	+	89022307	89032978	A3SS	ENSMUST00000169037.9	novel	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000031659.14	Adcy7	chr8	protein_coding	adenylate cyclase 7
novel_NIR_19420	chr8	89058374	89059107	-	89058070	89059107	A3SS	ENSMUST00000131748.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	5	0	5	n	-	-	-	-	-	-	ENSMUSG00000031660.14	Brd7	chr8	protein_coding	bromodomain containing 7
novel_NIR_19421	chr8	89061052	89063709	-	89060847	89063709	A3SS	ENSMUST00000149841.8	novel	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.25	2	6	2	6	y	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.08	1	12	1	12	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	ENSMUSG00000031660.14	Brd7	chr8	protein_coding	bromodomain containing 7
novel_NIR_19422	chr8	89315929	89316250	+	89315929	89316356	A3SS	ENSMUST00000034086.13	novel	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.17	2	10	2	10	y	0.00	0	12	0	12	n	ENSMUSG00000031661.13	Nkd1	chr8	protein_coding	naked cuticle 1
novel_NIR_19423	chr8	89423821	89428933	+	89423727	89428933	A5SS	ENSMUST00000211554.2	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.67	4	2	4	2	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000036712.16	Cyld	chr8	protein_coding	CYLD lysine 63 deubiquitinase
novel_NIR_19424	chr8	89423821	89431854	+	89423727	89431854	A5SS	ENSMUST00000043526.15	novel	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	1.00	3	0	3	0	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.71	5	2	5	2	y	ENSMUSG00000036712.16	Cyld	chr8	protein_coding	CYLD lysine 63 deubiquitinase
novel_NIR_19425	chr8	89423821	89431854	+	89429066	89431854	A5SS&ES	ENSMUST00000211554.2	novel	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	15	0	15	n	0.15	2	11	2	11	y	0.00	0	18	0	18	n	0.38	3	5	3	5	y	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.29	5	12	5	12	y	ENSMUSG00000036712.16	Cyld	chr8	protein_coding	CYLD lysine 63 deubiquitinase
novel_NIR_19426	chr8	89449840	89456093	+	89449840	89456087	A3SS	ENSMUST00000043526.15	novel	0.00	0	7	0	7	n	0.00	0	16	0	16	n	0.00	0	20	0	20	n	0.00	0	30	0	30	n	0.00	0	26	0	26	n	0.00	0	7	0	7	n	0.00	0	18	0	18	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	23	0	23	n	0.20	2	8	2	8	y	0.04	1	22	1	22	n	ENSMUSG00000036712.16	Cyld	chr8	protein_coding	CYLD lysine 63 deubiquitinase
novel_NIR_19427	chr8	89449840	89456093	+	89449840	89458303	A3SS	ENSMUST00000209206.2	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.29	2	5	2	5	y	0.33	1	2	1	2	n	ENSMUSG00000036712.16	Cyld	chr8	protein_coding	CYLD lysine 63 deubiquitinase
novel_NIR_19428	chr8	89755446	89768980	-	89755446;89760026	89756572;89768980	ES	ENSMUST00000034090.8	novel	0.07	2	28.5	2	31;26	n	0.03	1	31.0	1	50;12	n	0.00	0	19.0	0	27;11	n	0.03	1	30.5	1	36;25	n	0.02	1	40.5	1	48;33	n	0.00	0	13.0	0	19;7	n	0.04	1	25.5	1	38;13	n	0.00	0	23.5	0	30;17	n	0.15	3	17.0	3	20;14	y	0.03	1	30.5	1	49;12	n	0.05	1	20.5	1	33;8	n	0.10	3	28.5	3	36;21	n	ENSMUSG00000031665.8	Sall1	chr8	protein_coding	spalt like transcription factor 1
novel_NIR_19429	chr8	89760026	89766457	-	89760026	89768980	A5SS	ENSMUST00000034090.8	novel	0.07	2	26	2	26	n	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.04	1	25	1	25	n	0.00	0	33	0	33	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.06	1	17	1	17	n	0.00	0	14	0	14	n	0.20	3	12	3	12	y	0.11	1	8	1	8	n	0.00	0	21	0	21	n	ENSMUSG00000031665.8	Sall1	chr8	protein_coding	spalt like transcription factor 1
novel_NIR_19430	chr8	89769072	89769566	-	89769072	89770658	A5SS	ENSMUST00000034090.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000031665.8	Sall1	chr8	protein_coding	spalt like transcription factor 1
novel_NIR_19431	chr8	89769072	89770104	-	89769072	89770658	A5SS	ENSMUST00000034090.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.40	2	3	2	3	y	ENSMUSG00000031665.8	Sall1	chr8	protein_coding	spalt like transcription factor 1
novel_NIR_19432	chr8	91573210	91576262	+	91555542	91576262	A5SS	ENSMUST00000048665.8	novel	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.33	2	4	2	4	y	ENSMUSG00000056608.15	Chd9	chr8	protein_coding	chromodomain helicase DNA binding protein 9
novel_NIR_19433	chr8	91576387	91591959	+	91576387	91597999	A3SS	ENSMUST00000211215.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	4	0	4	0	y	ENSMUSG00000056608.15	Chd9	chr8	protein_coding	chromodomain helicase DNA binding protein 9
novel_NIR_19434	chr8	91576387	91591959	+	91576387	91600832	A3SS	ENSMUST00000211034.2	novel	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.36	4	7	4	7	y	ENSMUSG00000056608.15	Chd9	chr8	protein_coding	chromodomain helicase DNA binding protein 9
novel_NIR_19435	chr8	91576387	91591959	+	91576387	91617605	A3SS	ENSMUST00000209474.2	novel	0.00	0	14	0	14	n	0.00	0	26	0	26	n	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.00	0	25	0	25	n	0.00	0	28	0	28	n	0.00	0	11	0	11	n	0.00	0	17	0	17	n	0.00	0	5	0	5	n	0.00	0	17	0	17	n	0.00	0	7	0	7	n	0.20	4	16	4	16	y	ENSMUSG00000056608.15	Chd9	chr8	protein_coding	chromodomain helicase DNA binding protein 9
novel_NIR_19436	chr8	91576387	91591959	+	91576387	91658877	A3SS	ENSMUST00000048665.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	4	0	4	0	y	ENSMUSG00000056608.15	Chd9	chr8	protein_coding	chromodomain helicase DNA binding protein 9
novel_NIR_19437	chr8	91598755	91600832	+	91576387	91600832	A5SS	ENSMUST00000211034.2	novel	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.10	1	9	1	9	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.21	4	15	4	15	y	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	ENSMUSG00000056608.15	Chd9	chr8	protein_coding	chromodomain helicase DNA binding protein 9
novel_NIR_19438	chr8	91603336	91617605	+	91576387	91617605	A5SS	ENSMUST00000209474.2	novel	0.62	23	14	23	14	y	0.00	0	26	0	26	n	0.75	42	14	42	14	y	0.50	11	11	11	11	y	0.24	8	25	8	25	y	0.00	0	28	0	28	n	0.67	22	11	22	11	y	0.11	2	17	2	17	n	0.00	0	5	0	5	n	0.00	0	17	0	17	n	0.22	2	7	2	7	y	0.00	0	16	0	16	n	ENSMUSG00000056608.15	Chd9	chr8	protein_coding	chromodomain helicase DNA binding protein 9
novel_NIR_19439	chr8	91603336	91658877	+	91576387	91658877	A5SS	ENSMUST00000048665.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000056608.15	Chd9	chr8	protein_coding	chromodomain helicase DNA binding protein 9
novel_NIR_19440	chr8	91603336	91658877	+	91635432	91658877	5pMXE	ENSMUST00000211403.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000056608.15	Chd9	chr8	protein_coding	chromodomain helicase DNA binding protein 9
novel_NIR_19441	chr8	91613466	91617605	+	91576387	91617605	A5SS	ENSMUST00000209474.2	novel	0.00	0	14	0	14	n	0.00	0	26	0	26	n	0.00	0	14	0	14	n	0.15	2	11	2	11	y	0.00	0	25	0	25	n	0.00	0	28	0	28	n	0.00	0	11	0	11	n	0.00	0	17	0	17	n	0.00	0	5	0	5	n	0.00	0	17	0	17	n	0.00	0	7	0	7	n	0.00	0	16	0	16	n	ENSMUSG00000056608.15	Chd9	chr8	protein_coding	chromodomain helicase DNA binding protein 9
novel_NIR_19442	chr8	91699864	91700552	+	91699864	91703549	A3SS	ENSMUST00000048665.8	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.33	2	4	2	4	y	0.00	0	6	0	6	n	0.20	1	4	1	4	n	-	-	-	-	-	-	ENSMUSG00000056608.15	Chd9	chr8	protein_coding	chromodomain helicase DNA binding protein 9
novel_NIR_19443	chr8	91760263	91761533	+	91760872	91761533	A5SS	ENSMUST00000048665.8	novel	0.00	0	6	0	6	n	0.25	2	6	2	6	y	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	ENSMUSG00000056608.15	Chd9	chr8	protein_coding	chromodomain helicase DNA binding protein 9
novel_NIR_19444	chr8	91851309	91851451	-	91839258	91851451	A3SS	ENSMUST00000120426.9	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	8	0	8	0	y	1.00	7	0	7	0	y	ENSMUSG00000031667.17	Aktip	chr8	protein_coding	AKT interacting protein
novel_NIR_19445	chr8	91851309	91851451	-	91851306	91851451	A3SS	ENSMUST00000120213.9	novel	0.04	2	47	2	47	n	0.02	1	43	1	43	n	0.10	4	35	4	35	n	0.00	0	44	0	44	n	0.04	2	44	2	44	n	0.00	0	25	0	25	n	0.06	3	50	3	50	n	0.00	0	28	0	28	n	0.00	0	38	0	38	n	0.00	0	51	0	51	n	0.15	8	47	8	47	y	0.13	7	45	7	45	n	ENSMUSG00000031667.17	Aktip	chr8	protein_coding	AKT interacting protein
novel_NIR_19446	chr8	92040248	92125436	+	92040248	92114366	A3SS&ES	ENSMUST00000166548.9	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000055932.16	Fto	chr8	protein_coding	fat mass and obesity associated
novel_NIR_19447	chr8	93791652	93794692	-	93791652;93793681	93793643;93794692	ES	ENSMUST00000109582.3	novel	1.00	94	0.0	94	0;0	y	1.00	28	0.0	28	0;0	y	1.00	45	0.0	45	0;0	y	1.00	107	0.0	107	0;0	y	1.00	60	0.0	60	0;0	y	-	-	-	-	-	-	1.00	33	0.0	33	0;0	y	1.00	21	0.0	21	0;0	y	1.00	86	0.0	86	0;0	y	1.00	129	0.0	129	0;0	y	1.00	183	0.0	183	0;0	y	1.00	230	0.0	230	0;0	y	ENSMUSG00000078964.3	Ces1b	chr8	protein_coding	carboxylesterase 1B
novel_NIR_19448	chr8	93792800	93794692	-	93793681	93794692	A3SS&ES	ENSMUST00000109582.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	5	0	5	0	n	ENSMUSG00000078964.3	Ces1b	chr8	protein_coding	carboxylesterase 1B
novel_NIR_19449	chr8	93847000	93847100	-	93847000	93847240	A5SS	ENSMUST00000211843.2	novel	1.00	16	0	16	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	10	0	10	0	y	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	11	0	11	0	y	-	-	-	-	-	-	1.00	9	0	9	0	y	1.00	13	0	13	0	y	1.00	14	0	14	0	y	0.82	9	2	9	2	y	ENSMUSG00000057400.15	Ces1c	chr8	protein_coding	carboxylesterase 1C
novel_NIR_19450	chr8	94731853	94738320	-	94731853	94738636	A5SS	ENSMUST00000143265.2	novel	0.00	0	19	0	19	n	0.12	1	7	1	7	n	0.09	2	21	2	21	n	0.00	0	28	0	28	n	0.00	0	40	0	40	n	0.07	1	14	1	14	n	0.18	7	32	7	32	y	0.00	0	24	0	24	n	0.06	1	16	1	16	n	0.03	1	39	1	39	n	0.00	0	14	0	14	n	0.00	0	33	0	33	n	ENSMUSG00000031751.15	Amfr	chr8	protein_coding	autocrine motility factor receptor
novel_NIR_19451	chr8	94731853	94738367	-	94731853	94738636	A5SS	ENSMUST00000143265.2	novel	0.05	1	19	1	19	n	0.00	0	7	0	7	n	0.05	1	21	1	21	n	0.15	5	28	5	28	y	0.07	3	40	3	40	n	0.00	0	14	0	14	n	0.03	1	32	1	32	n	0.00	0	24	0	24	n	0.00	0	16	0	16	n	0.00	0	39	0	39	n	0.07	1	14	1	14	n	0.00	0	33	0	33	n	ENSMUSG00000031751.15	Amfr	chr8	protein_coding	autocrine motility factor receptor
novel_NIR_19452	chr8	94731853	94738857	-	94731853	94738636	5pMXE	ENSMUST00000143265.2	novel	0.00	0	19	0	19	n	0.00	0	7	0	7	n	0.00	0	21	0	21	n	0.00	0	28	0	28	n	0.33	20	40	20	40	y	0.00	0	14	0	14	n	0.00	0	32	0	32	n	0.00	0	24	0	24	n	0.00	0	16	0	16	n	0.00	0	39	0	39	n	0.00	0	14	0	14	n	0.00	0	33	0	33	n	ENSMUSG00000031751.15	Amfr	chr8	protein_coding	autocrine motility factor receptor
novel_NIR_19453	chr8	94765738	94766527	+	94765738	94773900	A3SS	ENSMUST00000109556.9	novel	0.00	0	10	0	10	n	0.12	1	7	1	7	n	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.05	1	21	1	21	n	0.00	0	5	0	5	n	0.17	2	10	2	10	y	0.00	0	16	0	16	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.09	1	10	1	10	n	0.00	0	11	0	11	n	ENSMUSG00000033009.16	Ogfod1	chr8	protein_coding	2-oxoglutarate and iron-dependent oxygenase domain containing 1
novel_NIR_19454	chr8	94765738	94766625	+	94765738	94773900	A3SS	ENSMUST00000109556.9	novel	0.09	1	10	1	10	n	0.00	0	7	0	7	n	0.07	1	14	1	14	n	0.06	1	16	1	16	n	0.05	1	21	1	21	n	0.00	0	5	0	5	n	0.09	1	10	1	10	n	0.00	0	16	0	16	n	0.38	3	5	3	5	y	0.00	0	9	0	9	n	0.09	1	10	1	10	n	0.00	0	11	0	11	n	ENSMUSG00000033009.16	Ogfod1	chr8	protein_coding	2-oxoglutarate and iron-dependent oxygenase domain containing 1
novel_NIR_19455	chr8	94899494	94899755	+	94899580	94899755	A5SS	ENSMUST00000212806.2	novel	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	19	0	19	n	0.17	1	5	1	5	n	0.40	4	6	4	6	y	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	1.00	4	0	4	0	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	ENSMUSG00000031762.8	Mt2	chr8	protein_coding	metallothionein 2
novel_NIR_19456	chr8	94899501	94899755	+	94899580	94899755	A5SS	ENSMUST00000212806.2	novel	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.21	5	19	5	19	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	5	0	5	n	ENSMUSG00000031762.8	Mt2	chr8	protein_coding	metallothionein 2
novel_NIR_19457	chr8	94899666	94899755	+	94899580	94899755	A5SS	ENSMUST00000212806.2	novel	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.32	9	19	9	19	y	0.00	0	5	0	5	n	0.50	6	6	6	6	y	0.48	10	11	10	11	y	0.11	1	8	1	8	n	0.31	5	11	5	11	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.17	1	5	1	5	n	ENSMUSG00000031762.8	Mt2	chr8	protein_coding	metallothionein 2
novel_NIR_19458	chr8	95081092	95082940	+	95079749	95082940	A5SS	ENSMUST00000034218.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031766.5	Slc12a3	chr8	protein_coding	solute carrier family 12, member 3
novel_NIR_19459	chr8	95104833	95105961	+	95104833	95106148	A3SS	ENSMUST00000159142.3	novel	0.00	0	7	0	7	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.12	1	7	1	7	n	0.10	1	9	1	9	n	0.50	3	3	3	3	y	0.10	1	9	1	9	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	ENSMUSG00000089712.3	Gm15889	chr8	lncRNA	predicted gene 15889
novel_NIR_19460	chr8	95104833	95106133	+	95104833	95106148	A3SS	ENSMUST00000159142.3	novel	0.22	2	7	2	7	y	0.12	1	7	1	7	n	1.00	4	0	4	0	y	0.36	4	7	4	7	y	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.07	1	14	1	14	n	0.00	0	8	0	8	n	0.12	1	7	1	7	n	ENSMUSG00000089712.3	Gm15889	chr8	lncRNA	predicted gene 15889
novel_NIR_19461	chr8	95113318	95115984	+	95114208	95115984	5pMXE	ENSMUST00000161085.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031770.17	Herpud1	chr8	protein_coding	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1
novel_NIR_19462	chr8	95113318	95115984	+	95114314	95115984	5pMXE	ENSMUST00000159450.2	novel	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.67	2	1	2	1	y	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	ENSMUSG00000031770.17	Herpud1	chr8	protein_coding	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1
novel_NIR_19463	chr8	95114576	95115984	+	95114208	95115984	A5SS	ENSMUST00000161085.8	novel	1.00	2	0	2	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	9	0	9	0	y	ENSMUSG00000031770.17	Herpud1	chr8	protein_coding	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1
novel_NIR_19464	chr8	95114576	95115984	+	95114314	95115984	A5SS	ENSMUST00000159450.2	novel	0.17	2	10	2	10	y	0.60	6	4	6	4	y	0.00	0	1	0	1	n	0.45	5	6	5	6	y	0.29	2	5	2	5	y	0.00	0	2	0	2	n	0.56	5	4	5	4	y	-	-	-	-	-	-	0.33	3	6	3	6	y	0.36	4	7	4	7	y	0.11	1	8	1	8	n	0.82	9	2	9	2	y	ENSMUSG00000031770.17	Herpud1	chr8	protein_coding	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1
novel_NIR_19465	chr8	95199657	95200613	+	95199682	95200613	A5SS	ENSMUST00000211816.2	novel	0.12	1	7	1	7	n	0.20	1	4	1	4	n	0.19	4	17	4	17	y	0.31	5	11	5	11	y	0.17	5	24	5	24	y	0.00	0	7	0	7	n	0.38	3	5	3	5	y	0.14	1	6	1	6	n	0.21	3	11	3	11	y	0.33	4	8	4	8	y	0.00	0	6	0	6	n	0.08	1	11	1	11	n	ENSMUSG00000074151.14	Nlrc5	chr8	protein_coding	NLR family, CARD domain containing 5
novel_NIR_19466	chr8	95208491	95209195	+	95208491;95208693	95208604;95209195	ES	ENSMUST00000211816.2	novel	0.00	0	7.0	0	8;6	n	0.00	0	7.0	0	5;9	n	0.09	1	10.0	1	12;8	n	0.00	0	6.5	0	6;7	n	0.12	2	15.0	2	19;11	n	0.00	0	9.5	0	12;7	n	0.25	5	15.0	5	17;13	y	0.12	1	7.5	1	10;5	n	0.33	4	8.0	4	6;10	y	0.36	5	9.0	5	10;8	y	0.27	2	5.5	2	7;4	y	0.06	1	14.5	1	11;18	n	ENSMUSG00000074151.14	Nlrc5	chr8	protein_coding	NLR family, CARD domain containing 5
novel_NIR_19467	chr8	95208491	95209195	+	95208693	95209195	5pMXE	ENSMUST00000183132.2	novel	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.11	1	8	1	8	n	0.00	0	7	0	7	n	0.15	2	11	2	11	y	0.00	0	7	0	7	n	0.28	5	13	5	13	y	0.17	1	5	1	5	n	0.29	4	10	4	10	y	0.38	5	8	5	8	y	0.33	2	4	2	4	y	0.05	1	18	1	18	n	ENSMUSG00000074151.14	Nlrc5	chr8	protein_coding	NLR family, CARD domain containing 5
novel_NIR_19468	chr8	95211249	95213268	+	95211249	95213260	A3SS	ENSMUST00000211816.2	novel	0.20	4	16	4	16	y	0.00	0	15	0	15	n	0.00	0	18	0	18	n	0.00	0	25	0	25	n	0.00	0	26	0	26	n	0.00	0	13	0	13	n	0.00	0	18	0	18	n	0.06	1	15	1	15	n	0.07	1	13	1	13	n	0.00	0	32	0	32	n	0.00	0	14	0	14	n	0.00	0	22	0	22	n	ENSMUSG00000074151.14	Nlrc5	chr8	protein_coding	NLR family, CARD domain containing 5
novel_NIR_19469	chr8	95220981	95221872	+	95220981	95224410	A3SS	ENSMUST00000211816.2	novel	0.00	0	19	0	19	n	0.00	0	13	0	13	n	0.04	1	24	1	24	n	0.00	0	23	0	23	n	0.00	0	34	0	34	n	0.00	0	12	0	12	n	0.00	0	24	0	24	n	0.00	0	18	0	18	n	0.16	3	16	3	16	y	0.03	1	31	1	31	n	0.05	1	18	1	18	n	0.00	0	28	0	28	n	ENSMUSG00000074151.14	Nlrc5	chr8	protein_coding	NLR family, CARD domain containing 5
novel_NIR_19470	chr8	95249375	95249463	+	95249380	95249463	A5SS	ENSMUST00000211816.2	novel	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.05	1	19	1	19	n	0.16	3	16	3	16	y	0.00	0	28	0	28	n	0.00	0	13	0	13	n	0.00	0	30	0	30	n	0.00	0	14	0	14	n	0.00	0	22	0	22	n	0.00	0	32	0	32	n	0.00	0	14	0	14	n	0.00	0	25	0	25	n	ENSMUSG00000074151.14	Nlrc5	chr8	protein_coding	NLR family, CARD domain containing 5
novel_NIR_19471	chr8	95275173	95277912	+	95275173	95275964	3pMXE	ENSMUST00000136550.8	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	3	3	3	3	y	-	-	-	-	-	-	0.60	3	2	3	2	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000034361.11	Cpne2	chr8	protein_coding	copine II
novel_NIR_19472	chr8	95284913	95286737	+	95282686	95286737	A5SS	ENSMUST00000212550.2	novel	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000034361.11	Cpne2	chr8	protein_coding	copine II
novel_NIR_19473	chr8	95316035	95318175	-	95316035	95317801	A5SS&ES	ENSMUST00000213008.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000031774.9	Psme3ip1	chr8	protein_coding	proteasome activator subunit 3 interacting protein 1
novel_NIR_19474	chr8	95316035	95318175	-	95316035	95318197	A5SS	ENSMUST00000212159.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000031774.9	Psme3ip1	chr8	protein_coding	proteasome activator subunit 3 interacting protein 1
novel_NIR_19475	chr8	95316035	95318175	-	95316035	95323679	A5SS	ENSMUST00000212791.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	0.17	1	5	1	5	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000031774.9	Psme3ip1	chr8	protein_coding	proteasome activator subunit 3 interacting protein 1
novel_NIR_19476	chr8	95316035	95318175	-	95316035	95328031	A5SS	ENSMUST00000212083.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031774.9	Psme3ip1	chr8	protein_coding	proteasome activator subunit 3 interacting protein 1
novel_NIR_19477	chr8	95316035	95318175	-	95316035	95328172	A5SS	ENSMUST00000213022.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.14	1	6	1	6	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000031774.9	Psme3ip1	chr8	protein_coding	proteasome activator subunit 3 interacting protein 1
novel_NIR_19478	chr8	95316035	95318175	-	95316035	95328263	A5SS	ENSMUST00000212788.2	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.17	1	5	1	5	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000031774.9	Psme3ip1	chr8	protein_coding	proteasome activator subunit 3 interacting protein 1
novel_NIR_19479	chr8	95348653	95349462	+	95328732	95349462	A5SS	ENSMUST00000211983.2	novel	0.00	0	5	0	5	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.20	1	4	1	4	n	0.20	1	4	1	4	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000050079.11	Rspry1	chr8	protein_coding	ring finger and SPRY domain containing 1
novel_NIR_19480	chr8	95558553	95559177	-	95558553	95564582	A5SS	ENSMUST00000159377.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031781.15	Ciapin1	chr8	protein_coding	cytokine induced apoptosis inhibitor 1
novel_NIR_19481	chr8	95593870	95593958	-	95593870	95594020	A5SS	ENSMUST00000212810.2	novel	0.67	2	1	2	1	y	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000040631.9	Dok4	chr8	protein_coding	docking protein 4
novel_NIR_19482	chr8	95814046	95814488	+	95814046	95816588	A3SS	ENSMUST00000034239.9	novel	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000031787.9	Katnb1	chr8	protein_coding	katanin p80 (WD40-containing) subunit B 1
novel_NIR_19483	chr8	95855576	95855957	+	95840444	95855957	A5SS	ENSMUST00000212682.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000110517.2	Gm31224	chr8	lncRNA	predicted gene, 31224
novel_NIR_19484	chr8	95855959	95861345	-	95837387	95861345	A3SS	ENSMUST00000034240.15	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.17	2	10	2	10	y	0.33	1	2	1	2	n	0.00	0	14	0	14	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	1.00	4	0	4	0	y	0.00	0	7	0	7	n	ENSMUSG00000031788.15	Kifc3	chr8	protein_coding	kinesin family member C3
novel_NIR_19485	chr8	95855959	95861345	-	95855962	95861345	A3SS	ENSMUST00000169748.9	novel	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.09	2	20	2	20	n	0.03	1	31	1	31	n	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.11	1	8	1	8	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.24	4	13	4	13	y	0.00	0	7	0	7	n	ENSMUSG00000031788.15	Kifc3	chr8	protein_coding	kinesin family member C3
novel_NIR_19486	chr8	95870603	95872139	+	95870531	95872139	A5SS	ENSMUST00000212925.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	9	0	9	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	ENSMUSG00000110475.2	Gm31036	chr8	lncRNA	predicted gene, 31036
novel_NIR_19487	chr8	96065445	96069771	+	96065445	96069750	A3SS	ENSMUST00000034245.16	novel	0.00	0	20	0	20	n	0.00	0	18	0	18	n	0.21	6	22	6	22	y	0.10	3	26	3	26	n	0.15	4	22	4	22	y	0.07	1	14	1	14	n	0.08	2	24	2	24	n	0.09	1	10	1	10	n	0.25	7	21	7	21	y	0.13	5	33	5	33	n	0.19	3	13	3	13	y	0.06	1	17	1	17	n	ENSMUSG00000031792.16	Usb1	chr8	protein_coding	U6 snRNA biogenesis 1
novel_NIR_19488	chr8	96192338	96203840	-	96192338	96214193	A5SS	ENSMUST00000212616.2	novel	0.29	2	5	2	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.67	2	1	2	1	y	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.33	1	2	1	2	n	0.50	2	2	2	2	n	0.00	0	1	0	1	n	ENSMUSG00000046707.10	Csnk2a2	chr8	protein_coding	casein kinase 2, alpha prime polypeptide
novel_NIR_19489	chr8	96192338;96203937	96203840;96214193	-	96192338	96214193	cassetteExon	ENSMUST00000212616.2	novel	0.41	3.5	5	2;5	5	y	0.33	1.0	2	0;2	2	n	0.25	1.0	3	0;2	3	n	0.50	1.0	1	2;0	1	n	0.33	1.5	3	1;2	3	n	0.00	0.0	4	0;0	4	n	0.25	1.0	3	0;2	3	n	0.00	0.0	1	0;0	1	n	0.11	0.5	4	1;0	4	n	0.33	1.0	2	1;1	2	n	0.43	1.5	2	2;1	2	n	0.00	0.0	1	0;0	1	n	ENSMUSG00000046707.10	Csnk2a2	chr8	protein_coding	casein kinase 2, alpha prime polypeptide
novel_NIR_19490	chr8	96203937	96214193	-	96192338	96214193	A3SS	ENSMUST00000212616.2	novel	0.50	5	5	5	5	n	0.50	2	2	2	2	y	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.40	2	3	2	3	n	0.00	0	4	0	4	n	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	ENSMUSG00000046707.10	Csnk2a2	chr8	protein_coding	casein kinase 2, alpha prime polypeptide
novel_NIR_19491	chr8	96203937	96214193	-	96203941	96214193	A3SS	ENSMUST00000056919.9	novel	0.15	5	29	5	29	y	0.06	2	32	2	32	n	0.03	2	62	2	62	n	0.00	0	48	0	48	n	0.03	2	61	2	61	n	0.00	0	26	0	26	n	0.05	2	36	2	36	n	0.00	0	24	0	24	n	0.00	0	32	0	32	n	0.02	1	48	1	48	n	0.04	1	25	1	25	n	0.00	0	56	0	56	n	ENSMUSG00000046707.10	Csnk2a2	chr8	protein_coding	casein kinase 2, alpha prime polypeptide
novel_NIR_19492	chr8	96442591	96442981	+	96442591	96443235	A3SS	ENSMUST00000154052.3	novel	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	ENSMUSG00000031671.12	Setd6	chr8	protein_coding	SET domain containing 6
novel_NIR_19493	chr8	96442591	96442981	+	96442898	96442981	A5SS	ENSMUST00000034096.6	novel	0.03	1	31	1	31	n	0.15	4	22	4	22	y	0.04	1	25	1	25	n	0.03	1	30	1	30	n	0.00	0	28	0	28	n	0.00	0	18	0	18	n	0.00	0	23	0	23	n	0.00	0	17	0	17	n	0.04	1	22	1	22	n	0.02	1	40	1	40	n	0.10	2	18	2	18	n	0.10	3	28	3	28	n	ENSMUSG00000031671.12	Setd6	chr8	protein_coding	SET domain containing 6
novel_NIR_19494	chr8	96443429	96444549	+	96443429	96444821	A3SS	ENSMUST00000141900.8	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.43	3	4	3	4	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000031671.12	Setd6	chr8	protein_coding	SET domain containing 6
novel_NIR_19495	chr8	96443429	96444549	+	96443690	96444549	5pMXE	ENSMUST00000154593.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.75	3	1	3	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000031671.12	Setd6	chr8	protein_coding	SET domain containing 6
novel_NIR_19496	chr8	96457289	96457397	-	96457289	96459699	A5SS	ENSMUST00000213006.2	novel	0.04	1	23	1	23	n	0.17	2	10	2	10	y	0.04	1	26	1	26	n	0.00	0	26	0	26	n	0.00	0	34	0	34	n	0.00	0	19	0	19	n	0.00	0	39	0	39	n	0.00	0	26	0	26	n	0.00	0	19	0	19	n	0.00	0	31	0	31	n	0.00	0	14	0	14	n	0.00	0	32	0	32	n	ENSMUSG00000036550.17	Cnot1	chr8	protein_coding	CCR4-NOT transcription complex, subunit 1
novel_NIR_19497	chr8	96593835	96596100	-	96593835	96594552	5pMXE	ENSMUST00000211836.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031672.9	Got2	chr8	protein_coding	glutamatic-oxaloacetic transaminase 2, mitochondrial
novel_NIR_19498	chr9	100357055	100377574	-	100357055	100368309	5pMXE	ENSMUST00000098458.4	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.28	11	28	11	28	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000044244.19	Il20rb	chr9	protein_coding	interleukin 20 receptor beta
novel_NIR_19499	chr9	100357055	100379311	-	100357055	100368309	5pMXE	ENSMUST00000098458.4	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	28	0	28	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	ENSMUSG00000044244.19	Il20rb	chr9	protein_coding	interleukin 20 receptor beta
novel_NIR_19500	chr9	100620195	100658809	+	100620195	100639743	A3SS&ES	ENSMUST00000155108.8	novel	0.14	1	6	1	6	n	0.33	2	4	2	4	y	0.18	6	27	6	27	y	0.14	2	12	2	12	n	0.14	2	12	2	12	n	0.10	1	9	1	9	n	0.18	2	9	2	9	y	0.00	0	11	0	11	n	0.11	1	8	1	8	n	0.25	4	12	4	12	y	0.00	0	5	0	5	n	0.07	1	13	1	13	n	ENSMUSG00000037286.16	Stag1	chr9	protein_coding	stromal antigen 1
novel_NIR_19501	chr9	100620195	100658809	+	100620195	100668545	A3SS	ENSMUST00000146312.8	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	6	0	6	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.80	4	1	4	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000037286.16	Stag1	chr9	protein_coding	stromal antigen 1
novel_NIR_19502	chr9	100620195	100658809	+	100620195;100639839	100639743;100658809	ES	ENSMUST00000129269.8	novel	0.10	1	9.5	1	6;13	n	0.33	2	4.0	2	4;4	y	0.15	6	34.0	6	27;41	y	0.12	2	14.5	2	12;17	n	0.16	2	10.5	2	12;9	y	0.07	1	13.0	1	9;17	n	0.21	2	7.5	2	9;6	y	0.00	0	12.0	0	11;13	n	0.12	1	7.5	1	8;7	n	0.22	4	14.0	4	12;16	y	0.00	0	6.0	0	5;7	n	0.08	1	11.5	1	13;10	n	ENSMUSG00000037286.16	Stag1	chr9	protein_coding	stromal antigen 1
novel_NIR_19503	chr9	100893246	100894758	-	100894172	100894758	3pMXE	ENSMUST00000145091.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032527.14	Pccb	chr9	protein_coding	propionyl Coenzyme A carboxylase, beta polypeptide
novel_NIR_19504	chr9	101001733	101002222	-	100985168	101002222	A3SS	ENSMUST00000075941.12	novel	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.13	2	13	2	13	n	0.06	1	15	1	15	n	0.11	2	16	2	16	n	0.29	2	5	2	5	y	0.07	2	27	2	27	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.04	1	22	1	22	n	0.12	2	14	2	14	n	0.06	1	15	1	15	n	ENSMUSG00000043154.16	Ppp2r3a	chr9	protein_coding	protein phosphatase 2, regulatory subunit B'', alpha
novel_NIR_19505	chr9	101001733	101002222	-	100994503	101002222	A3SS	ENSMUST00000185719.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.50	2	2	2	2	y	0.50	1	1	1	1	n	ENSMUSG00000043154.16	Ppp2r3a	chr9	protein_coding	protein phosphatase 2, regulatory subunit B'', alpha
novel_NIR_19506	chr9	101071624	101077246	-	101071624	101075830	5pMXE	ENSMUST00000066773.9	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000043154.16	Ppp2r3a	chr9	protein_coding	protein phosphatase 2, regulatory subunit B'', alpha
novel_NIR_19507	chr9	101071624	101077246	-	101071624	101088330	A5SS	ENSMUST00000075941.12	novel	0.00	0	3	0	3	n	0.14	1	6	1	6	n	0.17	2	10	2	10	y	0.00	0	9	0	9	n	0.06	1	17	1	17	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	11	0	11	n	ENSMUSG00000043154.16	Ppp2r3a	chr9	protein_coding	protein phosphatase 2, regulatory subunit B'', alpha
novel_NIR_19508	chr9	102496959	102500755	-	102496959	102498895	5pMXE	ENSMUST00000162960.8	novel	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.20	1	4	1	4	n	0.00	0	8	0	8	n	0.20	2	8	2	8	y	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.29	2	5	2	5	y	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.14	2	12	2	12	n	ENSMUSG00000032534.19	Cep63	chr9	protein_coding	centrosomal protein 63
novel_NIR_19509	chr9	102496959	102500755	-	102496959	102503462	A5SS	ENSMUST00000162655.9	novel	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.08	1	11	1	11	n	0.00	0	11	0	11	n	0.12	2	15	2	15	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.20	2	8	2	8	y	0.00	0	11	0	11	n	0.00	0	20	0	20	n	0.00	0	4	0	4	n	0.12	2	15	2	15	n	ENSMUSG00000032534.19	Cep63	chr9	protein_coding	centrosomal protein 63
novel_NIR_19510	chr9	102496959	102500755	-	102496959;102498927	102498895;102500755	ES	ENSMUST00000093791.10	novel	0.00	0	3.5	0	3;4	n	0.00	0	7.0	0	9;5	n	0.22	1	3.5	1	4;3	n	0.00	0	6.0	0	8;4	n	0.22	2	7.0	2	8;6	y	0.00	0	6.0	0	6;6	n	0.00	0	7.0	0	9;5	n	0.31	2	4.5	2	5;4	y	0.00	0	4.5	0	7;2	n	0.00	0	4.5	0	5;4	n	0.00	0	3.5	0	4;3	n	0.15	2	11.5	2	12;11	y	ENSMUSG00000032534.19	Cep63	chr9	protein_coding	centrosomal protein 63
novel_NIR_19511	chr9	102496959	102503103	-	102496959	102498895	5pMXE	ENSMUST00000162960.8	novel	0.00	0	3	0	3	n	0.18	2	9	2	9	y	0.20	1	4	1	4	n	0.20	2	8	2	8	y	0.11	1	8	1	8	n	0.25	2	6	2	6	y	0.57	12	9	12	9	y	0.00	0	5	0	5	n	0.22	2	7	2	7	y	0.38	3	5	3	5	y	0.00	0	4	0	4	n	0.14	2	12	2	12	n	ENSMUSG00000032534.19	Cep63	chr9	protein_coding	centrosomal protein 63
novel_NIR_19512	chr9	102496959	102503103	-	102496959	102503462	A5SS	ENSMUST00000162655.9	novel	0.00	0	5	0	5	n	0.22	2	7	2	7	y	0.08	1	11	1	11	n	0.15	2	11	2	11	y	0.06	1	15	1	15	n	0.25	2	6	2	6	y	0.48	12	13	12	13	y	0.00	0	8	0	8	n	0.15	2	11	2	11	y	0.13	3	20	3	20	n	0.00	0	4	0	4	n	0.12	2	15	2	15	n	ENSMUSG00000032534.19	Cep63	chr9	protein_coding	centrosomal protein 63
novel_NIR_19513	chr9	102617138;102619940	102619842;102624719	+	102617138	102624719	cassetteExon	ENSMUST00000178539.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.25	1.0	3	0;2	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.53	4.5	4	3;6	4	y	1.00	0.5	0	1;0	0	n	0.14	0.5	3	0;1	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000093812.2	Gm5627	chr9	lncRNA	predicted gene 5627
novel_NIR_19514	chr9	102619940	102624719	+	102617138	102624719	A5SS	ENSMUST00000178539.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	0.60	6	4	6	4	n	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000093812.2	Gm5627	chr9	lncRNA	predicted gene 5627
novel_NIR_19515	chr9	102734442	102739073	+	102723393	102739073	A5SS	ENSMUST00000176573.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032547.13	Ryk	chr9	protein_coding	receptor-like tyrosine kinase
novel_NIR_19516	chr9	102866090	102884529	+	102866090;102882077	102881908;102884529	ES	ENSMUST00000185215.2	novel	0.25	1	3.0	1	6;0	n	0.50	3	3.0	3	6;0	y	-	-	-	-	-	-	0.69	9	4.0	9	8;0	y	0.57	6	4.5	6	9;0	y	0.67	1	0.5	1	1;0	n	0.67	3	1.5	3	3;0	y	-	-	-	-	-	-	0.50	5	5.0	5	10;0	y	0.35	4	7.5	4	15;0	y	0.00	0	3.0	0	6;0	n	0.70	7	3.0	7	6;0	y	ENSMUSG00000032548.15	Slco2a1	chr9	protein_coding	solute carrier organic anion transporter family, member 2a1
novel_NIR_19517	chr9	102962973	102972943	+	102963152	102972943	A5SS	ENSMUST00000188664.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032548.15	Slco2a1	chr9	protein_coding	solute carrier organic anion transporter family, member 2a1
novel_NIR_19518	chr9	103094654	103096422	-	103094717	103096422	A3SS	ENSMUST00000168142.8	novel	0.00	0	574	0	574	n	0.00	0	602	0	602	n	0.00	0	1399	0	1399	n	0.00	0	541	0	541	n	0.00	0	1138	0	1138	n	0.00	0	876	0	876	n	0.00	0	739	0	739	n	0.51	877	855	877	855	y	0.36	285	505	285	505	y	0.00	0	615	0	615	n	0.00	0	497	0	497	n	0.00	0	683	0	683	n	ENSMUSG00000032554.16	Trf	chr9	protein_coding	transferrin
novel_NIR_19519	chr9	103096452	103097001	-	103094717	103097001	A3SS	ENSMUST00000170904.2	novel	0.00	0	61	0	61	n	0.15	13	72	13	72	y	0.23	37	126	37	126	y	0.04	3	77	3	77	n	0.00	0	106	0	106	n	0.00	0	95	0	95	n	0.13	14	92	14	92	n	0.28	35	88	35	88	y	0.00	0	59	0	59	n	0.00	0	78	0	78	n	0.27	24	64	24	64	y	0.22	21	75	21	75	y	ENSMUSG00000032554.16	Trf	chr9	protein_coding	transferrin
novel_NIR_19520	chr9	103105267	103105645	-	103105267	103105528	5pMXE	ENSMUST00000126359.2	novel	1.00	2	0	2	0	y	1.00	3	0	3	0	y	0.45	10	12	10	12	y	0.00	0	5	0	5	n	1.00	4	0	4	0	y	0.71	5	2	5	2	y	0.00	0	9	0	9	n	0.70	7	3	7	3	y	0.80	4	1	4	1	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.50	3	3	3	3	y	ENSMUSG00000032554.16	Trf	chr9	protein_coding	transferrin
novel_NIR_19521	chr9	103105267	103105813	-	103105267	103105528	5pMXE	ENSMUST00000126359.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.14	2	12	2	12	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.60	3	2	3	2	y	-	-	-	-	-	-	0.62	5	3	5	3	y	ENSMUSG00000032554.16	Trf	chr9	protein_coding	transferrin
novel_NIR_19522	chr9	103105267	103106450	-	103105267	103105528	5pMXE	ENSMUST00000126359.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	12	0	12	n	0.00	0	5	0	5	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000032554.16	Trf	chr9	protein_coding	transferrin
novel_NIR_19523	chr9	103105267	103106641	-	103105267	103105528	5pMXE	ENSMUST00000126359.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	12	0	12	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000032554.16	Trf	chr9	protein_coding	transferrin
novel_NIR_19524	chr9	103105267	103107149	-	103105267	103105528	5pMXE	ENSMUST00000126359.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.54	14	12	14	12	y	0.00	0	5	0	5	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.18	2	9	2	9	y	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000032554.16	Trf	chr9	protein_coding	transferrin
novel_NIR_19525	chr9	103105267	103107338	-	103105267	103105528	5pMXE	ENSMUST00000126359.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	12	0	12	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.31	4	9	4	9	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000032554.16	Trf	chr9	protein_coding	transferrin
novel_NIR_19526	chr9	103105267	103107367	-	103105267	103105528	5pMXE	ENSMUST00000126359.2	novel	1.00	23	0	23	0	y	1.00	19	0	19	0	y	0.91	127	12	127	12	y	0.85	29	5	29	5	y	1.00	46	0	46	0	y	0.95	36	2	36	2	y	0.80	36	9	36	9	y	0.94	47	3	47	3	y	0.94	15	1	15	1	y	0.90	19	2	19	2	y	1.00	20	0	20	0	y	0.89	24	3	24	3	y	ENSMUSG00000032554.16	Trf	chr9	protein_coding	transferrin
novel_NIR_19527	chr9	103105267	103107400	-	103105267	103105528	5pMXE	ENSMUST00000126359.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.40	8	12	8	12	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000032554.16	Trf	chr9	protein_coding	transferrin
novel_NIR_19528	chr9	103105267	103108966	-	103105267	103105528	5pMXE	ENSMUST00000126359.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.08	1	12	1	12	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.71	5	2	5	2	y	0.18	2	9	2	9	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000032554.16	Trf	chr9	protein_coding	transferrin
novel_NIR_19529	chr9	103105267	103120646	-	103105267	103105528	5pMXE	ENSMUST00000126359.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.20	3	12	3	12	y	0.00	0	5	0	5	n	1.00	1	0	1	0	n	0.67	4	2	4	2	y	0.10	1	9	1	9	n	0.77	10	3	10	3	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000032554.16	Trf	chr9	protein_coding	transferrin
novel_NIR_19530	chr9	103133828	103134418	-	103133828	103134271	A5SS&ES	ENSMUST00000154357.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	4	0	4	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033688.11	1300017J02Rik	chr9	protein_coding	RIKEN cDNA 1300017J02 gene
novel_NIR_19531	chr9	103134531	103136569	-	103134282	103136569	A3SS	ENSMUST00000154357.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033688.11	1300017J02Rik	chr9	protein_coding	RIKEN cDNA 1300017J02 gene
novel_NIR_19532	chr9	103135679	103136569	-	103134282	103136569	A3SS	ENSMUST00000154357.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000033688.11	1300017J02Rik	chr9	protein_coding	RIKEN cDNA 1300017J02 gene
novel_NIR_19533	chr9	103145644	103146811	-	103143458	103146811	A3SS	ENSMUST00000123530.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	16	0	16	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	10	0	10	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033688.11	1300017J02Rik	chr9	protein_coding	RIKEN cDNA 1300017J02 gene
novel_NIR_19534	chr9	103149571	103149686	-	103149517	103149686	A3SS	ENSMUST00000150524.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000033688.11	1300017J02Rik	chr9	protein_coding	RIKEN cDNA 1300017J02 gene
novel_NIR_19535	chr9	103232065	103233479	-	103232512	103233479	A3SS	ENSMUST00000035484.11	novel	0.00	0	12	0	12	n	0.33	2	4	2	4	y	0.05	1	19	1	19	n	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.13	3	20	3	20	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	ENSMUSG00000032803.16	Cdv3	chr9	protein_coding	carnitine deficiency-associated gene expressed in ventricle 3
novel_NIR_19536	chr9	103916773	103917875	+	103916773	103917801	A3SS	ENSMUST00000193439.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	ENSMUSG00000032558.20	Nphp3	chr9	protein_coding	nephronophthisis 3 (adolescent)
novel_NIR_19537	chr9	103916773	103917875	+	103916773	103917821	A3SS	ENSMUST00000035167.15	novel	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	20	0	20	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.20	2	8	2	8	y	0.00	0	11	0	11	n	ENSMUSG00000032558.20	Nphp3	chr9	protein_coding	nephronophthisis 3 (adolescent)
novel_NIR_19538	chr9	103934182	103935232	-	103934182	103937358	A5SS	ENSMUST00000140768.3	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032557.14	Uba5	chr9	protein_coding	ubiquitin-like modifier activating enzyme 5
novel_NIR_19539	chr9	103934182	103935232	-	103934182	103937422	A5SS	ENSMUST00000144195.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000032557.14	Uba5	chr9	protein_coding	ubiquitin-like modifier activating enzyme 5
novel_NIR_19540	chr9	103941170	103950821	+	103918453	103950821	A5SS	ENSMUST00000147249.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000101152.2	Gm28305	chr9	protein_coding	predicted gene 28305
novel_NIR_19541	chr9	103941170	103950821	+	103940719	103950821	A5SS	ENSMUST00000120854.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000090150.11	Acad11	chr9	protein_coding	acyl-Coenzyme A dehydrogenase family, member 11
novel_NIR_19542	chr9	104095881	104098603	-	104095881;104097177	104097070;104098603	ES	ENSMUST00000035170.13	novel	0.00	0	6.0	0	6;6	n	0.00	0	5.0	0	5;5	n	0.27	3	8.0	3	9;7	y	0.00	0	13.5	0	10;17	n	0.00	0	20.0	0	20;20	n	0.00	0	9.0	0	7;11	n	0.00	0	9.5	0	7;12	n	0.00	0	10.0	0	9;11	n	0.00	0	6.0	0	9;3	n	0.00	0	12.0	0	15;9	n	0.00	0	6.0	0	6;6	n	0.00	0	13.0	0	14;12	n	ENSMUSG00000032560.15	Dnajc13	chr9	protein_coding	DnaJ heat shock protein family (Hsp40) member C13
novel_NIR_19543	chr9	104938895	104939098	+	104938883	104939098	A5SS	ENSMUST00000131655.4	novel	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	4	0	4	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	ENSMUSG00000032563.17	Mrpl3	chr9	protein_coding	mitochondrial ribosomal protein L3
novel_NIR_19544	chr9	105275057	105278658	+	105275057	105278675	A3SS	ENSMUST00000035181.10	novel	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.22	2	7	2	7	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	ENSMUSG00000032567.17	Aste1	chr9	protein_coding	asteroid homolog 1
novel_NIR_19545	chr9	105326087	105327893	-	105326087	105328992	A5SS	ENSMUST00000176960.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000032570.18	Atp2c1	chr9	protein_coding	ATPase, Ca++-sequestering
novel_NIR_19546	chr9	105592410	105593873	-	105592410;105592556	105592521;105593873	ES	ENSMUST00000098441.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1.5	0	1;2	n	-	-	-	-	-	-	0.00	0	1.5	0	1;2	n	0.00	0	1.0	0	1;1	n	-	-	-	-	-	-	0.33	1	2.0	1	2;2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1.0	0	1;1	n	1.00	4	0.0	4	0;0	y	ENSMUSG00000043719.15	Col6a6	chr9	protein_coding	collagen, type VI, alpha 6
novel_NIR_19547	chr9	105631434	105631975	-	105631434	105632705	A5SS	ENSMUST00000098441.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000043719.15	Col6a6	chr9	protein_coding	collagen, type VI, alpha 6
novel_NIR_19548	chr9	106033716	106034252	+	106033716	106034192	A3SS	ENSMUST00000143956.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000086296.3	D030055H07Rik	chr9	lncRNA	RIKEN cDNA D030055H07 gene
novel_NIR_19549	chr9	106033716	106034252	+	106033716	106036980	A3SS	ENSMUST00000160569.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000086296.3	D030055H07Rik	chr9	lncRNA	RIKEN cDNA D030055H07 gene
novel_NIR_19550	chr9	106033771	106034344	-	106033733	106034344	A3SS	ENSMUST00000217417.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	29	0	29	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000020258.17	Glyctk	chr9	protein_coding	glycerate kinase
novel_NIR_19551	chr9	106034433	106036980	+	106033716	106036980	A5SS	ENSMUST00000160569.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000086296.3	D030055H07Rik	chr9	lncRNA	RIKEN cDNA D030055H07 gene
novel_NIR_19552	chr9	106034433	106036980	+	106034433	106035081	3pMXE	ENSMUST00000143956.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000086296.3	D030055H07Rik	chr9	lncRNA	RIKEN cDNA D030055H07 gene
novel_NIR_19553	chr9	106035099	106035199	-	106035103	106035199	A3SS	ENSMUST00000162562.2	novel	0.06	5	83	5	83	n	0.00	0	42	0	42	n	0.22	24	85	24	85	y	0.01	1	100	1	100	n	0.00	0	141	0	141	n	0.15	17	99	17	99	y	0.00	0	101	0	101	n	0.14	15	94	15	94	n	0.00	0	50	0	50	n	0.19	20	83	20	83	y	0.19	16	68	16	68	y	0.04	3	71	3	71	n	ENSMUSG00000020258.17	Glyctk	chr9	protein_coding	glycerate kinase
novel_NIR_19554	chr9	106035099	106035240	-	106035103	106035240	A3SS	ENSMUST00000112543.9	novel	0.00	0	49	0	49	n	0.00	0	45	0	45	n	0.00	0	81	0	81	n	0.00	0	80	0	80	n	0.18	23	107	23	107	y	0.04	4	86	4	86	n	0.17	21	103	21	103	y	0.07	6	82	6	82	n	0.00	0	48	0	48	n	0.00	0	103	0	103	n	0.01	1	80	1	80	n	0.04	3	80	3	80	n	ENSMUSG00000020258.17	Glyctk	chr9	protein_coding	glycerate kinase
novel_NIR_19555	chr9	106035103	106035211	-	106035103	106035250	A5SS	ENSMUST00000159809.2	novel	0.22	2	7	2	7	y	0.31	5	11	5	11	y	0.19	6	26	6	26	y	0.16	3	16	3	16	y	0.27	7	19	7	19	y	0.12	3	21	3	21	n	0.13	2	13	2	13	n	0.22	8	29	8	29	y	0.26	5	14	5	14	y	0.00	0	16	0	16	n	0.23	5	17	5	17	y	0.00	0	13	0	13	n	ENSMUSG00000020258.17	Glyctk	chr9	protein_coding	glycerate kinase
novel_NIR_19556	chr9	106035103	106035309	-	106035103	106035250	A5SS	ENSMUST00000159809.2	novel	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	26	0	26	n	0.06	1	16	1	16	n	0.17	4	19	4	19	y	0.09	2	21	2	21	n	0.00	0	13	0	13	n	0.06	2	29	2	29	n	0.07	1	14	1	14	n	0.00	0	16	0	16	n	0.00	0	17	0	17	n	0.00	0	13	0	13	n	ENSMUSG00000020258.17	Glyctk	chr9	protein_coding	glycerate kinase
novel_NIR_19557	chr9	106036211	106036980	+	106033716	106036980	A5SS	ENSMUST00000160569.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000086296.3	D030055H07Rik	chr9	lncRNA	RIKEN cDNA D030055H07 gene
novel_NIR_19558	chr9	106115432	106115842	-	106113907	106115842	A3SS	ENSMUST00000214989.2	novel	1.00	14	0	14	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032786.17	Alas1	chr9	protein_coding	aminolevulinic acid synthase 1
novel_NIR_19559	chr9	106115432	106115842	-	106115435	106115842	A3SS	ENSMUST00000074082.13	novel	0.29	14	34	14	34	y	-	-	-	-	-	-	0.00	0	15	0	15	n	0.00	0	27	0	27	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	34	0	34	n	-	-	-	-	-	-	0.10	1	9	1	9	n	0.00	0	31	0	31	n	0.00	0	30	0	30	n	0.00	0	29	0	29	n	ENSMUSG00000032786.17	Alas1	chr9	protein_coding	aminolevulinic acid synthase 1
novel_NIR_19560	chr9	106120594	106120745	-	106120594	106120754	A5SS	ENSMUST00000134053.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032786.17	Alas1	chr9	protein_coding	aminolevulinic acid synthase 1
novel_NIR_19561	chr9	106120594	106121117	-	106120594	106120754	5pMXE	ENSMUST00000134053.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032786.17	Alas1	chr9	protein_coding	aminolevulinic acid synthase 1
novel_NIR_19562	chr9	106120594	106122144	-	106120594	106120754	5pMXE	ENSMUST00000134053.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000032786.17	Alas1	chr9	protein_coding	aminolevulinic acid synthase 1
novel_NIR_19563	chr9	106120594	106122517	-	106120594	106120754	5pMXE	ENSMUST00000134053.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000032786.17	Alas1	chr9	protein_coding	aminolevulinic acid synthase 1
novel_NIR_19564	chr9	106122253	106123958	-	106120591	106123958	A3SS	ENSMUST00000133617.3	novel	0.07	1	14	1	14	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.25	2	6	2	6	y	0.00	0	1	0	1	n	0.00	0	7	0	7	n	ENSMUSG00000032786.17	Alas1	chr9	protein_coding	aminolevulinic acid synthase 1
novel_NIR_19565	chr9	106123471	106123958	-	106120591	106123958	A3SS	ENSMUST00000133617.3	novel	0.26	5	14	5	14	y	0.20	2	8	2	8	y	0.60	3	2	3	2	y	0.29	2	5	2	5	y	1.00	2	0	2	0	y	-	-	-	-	-	-	0.71	5	2	5	2	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.75	3	1	3	1	y	0.30	3	7	3	7	y	ENSMUSG00000032786.17	Alas1	chr9	protein_coding	aminolevulinic acid synthase 1
novel_NIR_19566	chr9	106123478	106123958	-	106120591	106123958	A3SS	ENSMUST00000133617.3	novel	0.00	0	14	0	14	n	0.38	5	8	5	8	y	0.78	7	2	7	2	y	0.00	0	5	0	5	n	1.00	8	0	8	0	y	1.00	3	0	3	0	y	0.75	6	2	6	2	y	1.00	1	0	1	0	n	0.57	4	3	4	3	y	0.45	5	6	5	6	y	0.50	1	1	1	1	n	0.53	8	7	8	7	y	ENSMUSG00000032786.17	Alas1	chr9	protein_coding	aminolevulinic acid synthase 1
novel_NIR_19567	chr9	106124177	106124539	-	106124177	106124373	A5SS	ENSMUST00000112524.9	novel	0.00	0	2	0	2	n	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	-	-	-	-	-	-	ENSMUSG00000032786.17	Alas1	chr9	protein_coding	aminolevulinic acid synthase 1
novel_NIR_19568	chr9	106185232	106188902	+	106185232	106202588	A3SS	ENSMUST00000214540.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023345.18	Poc1a	chr9	protein_coding	POC1 centriolar protein A
novel_NIR_19569	chr9	106185232	106188902	+	106185232	106203483	A3SS	ENSMUST00000214483.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023345.18	Poc1a	chr9	protein_coding	POC1 centriolar protein A
novel_NIR_19570	chr9	106185232	106188902	+	106185232	106207072	A3SS	ENSMUST00000072206.14	novel	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.31	4	9	4	9	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	ENSMUSG00000023345.18	Poc1a	chr9	protein_coding	POC1 centriolar protein A
novel_NIR_19571	chr9	106185232	106188902	+	106185232	106207100	A3SS	ENSMUST00000214208.2	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000023345.18	Poc1a	chr9	protein_coding	POC1 centriolar protein A
novel_NIR_19572	chr9	106185232	106188902	+	106185232	106226881	A3SS	ENSMUST00000191434.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023345.18	Poc1a	chr9	protein_coding	POC1 centriolar protein A
novel_NIR_19573	chr9	106312028	106312299	-	106312028	106312667	A5SS	ENSMUST00000215506.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023262.14	Acy1	chr9	protein_coding	aminoacylase 1
novel_NIR_19574	chr9	106318055	106318424	-	106318055	106321005	A5SS	ENSMUST00000187983.8	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	9	0	9	n	-	-	-	-	-	-	0.29	2	5	2	5	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	ENSMUSG00000042210.18	Abhd14a	chr9	protein_coding	abhydrolase domain containing 14A
novel_NIR_19575	chr9	106321505	106325970	-	106321505	106321983	5pMXE	ENSMUST00000187983.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000042210.18	Abhd14a	chr9	protein_coding	abhydrolase domain containing 14A
novel_NIR_19576	chr9	106321505	106325970	-	106321505	106324730	5pMXE	ENSMUST00000171925.8	novel	1.00	2	0	2	0	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.12	1	7	1	7	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	ENSMUSG00000042210.18	Abhd14a	chr9	protein_coding	abhydrolase domain containing 14A
novel_NIR_19577	chr9	106321505	106327103	-	106321505	106321983	5pMXE	ENSMUST00000187983.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000042210.18	Abhd14a	chr9	protein_coding	abhydrolase domain containing 14A
novel_NIR_19578	chr9	106321505	106327103	-	106321505	106324730	5pMXE	ENSMUST00000171925.8	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.50	3	3	3	3	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	ENSMUSG00000042210.18	Abhd14a	chr9	protein_coding	abhydrolase domain containing 14A
novel_NIR_19579	chr9	106323033	106325970	-	106323033	106324570	5pMXE	ENSMUST00000187001.2	novel	0.00	0	6	0	6	n	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.20	1	4	1	4	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	ENSMUSG00000042210.18	Abhd14a	chr9	protein_coding	abhydrolase domain containing 14A
novel_NIR_19580	chr9	106323033	106325970	-	106323033	106324730	5pMXE	ENSMUST00000171678.9	novel	0.00	0	6	0	6	n	0.20	2	8	2	8	y	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.07	1	14	1	14	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.12	1	7	1	7	n	0.05	1	18	1	18	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	ENSMUSG00000042210.18	Abhd14a	chr9	protein_coding	abhydrolase domain containing 14A
novel_NIR_19581	chr9	106325527	106327113	+	106325527	106327203	A3SS	ENSMUST00000187106.7	novel	0.00	0	39	0	39	n	0.11	3	25	3	25	n	0.00	0	8	0	8	n	0.00	0	30	0	30	n	0.00	0	41	0	41	n	0.00	0	8	0	8	n	0.04	2	55	2	55	n	0.00	0	15	0	15	n	0.00	0	21	0	21	n	0.00	0	37	0	37	n	0.00	0	31	0	31	n	0.19	7	30	7	30	y	ENSMUSG00000042073.16	Abhd14b	chr9	protein_coding	abhydrolase domain containing 14b
novel_NIR_19582	chr9	106325908	106326437	+	106325908	106327113	A3SS	ENSMUST00000185347.8	novel	0.15	5	28	5	28	y	0.00	0	35	0	35	n	0.00	0	20	0	20	n	0.03	1	33	1	33	n	0.02	1	43	1	43	n	0.00	0	18	0	18	n	0.00	0	41	0	41	n	0.00	0	30	0	30	n	0.00	0	35	0	35	n	0.00	0	58	0	58	n	0.00	0	33	0	33	n	0.04	2	50	2	50	n	ENSMUSG00000042073.16	Abhd14b	chr9	protein_coding	abhydrolase domain containing 14b
novel_NIR_19583	chr9	106325908	106326437	+	106325908	106328592	A3SS	ENSMUST00000217496.2	novel	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000042073.16	Abhd14b	chr9	protein_coding	abhydrolase domain containing 14b
novel_NIR_19584	chr9	106330644	106331109	+	106330621	106331109	A5SS	ENSMUST00000185874.7	novel	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	11	0	11	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	6	0	6	0	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	ENSMUSG00000023495.14	Pcbp4	chr9	protein_coding	poly(rC) binding protein 4
novel_NIR_19585	chr9	106330657	106331109	+	106330621	106331109	A5SS	ENSMUST00000185874.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000023495.14	Pcbp4	chr9	protein_coding	poly(rC) binding protein 4
novel_NIR_19586	chr9	106330841	106331109	+	106330621	106331109	A5SS	ENSMUST00000185874.7	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	8	0	8	0	y	ENSMUSG00000023495.14	Pcbp4	chr9	protein_coding	poly(rC) binding protein 4
novel_NIR_19587	chr9	106330841	106331109	+	106330841	106331125	A3SS	ENSMUST00000185854.2	novel	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	8	0	8	0	y	ENSMUSG00000023495.14	Pcbp4	chr9	protein_coding	poly(rC) binding protein 4
novel_NIR_19588	chr9	106331206	106332599	+	106331206	106331589	3pMXE	ENSMUST00000187975.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023495.14	Pcbp4	chr9	protein_coding	poly(rC) binding protein 4
novel_NIR_19589	chr9	106331206	106332599	+	106331206	106333481	A3SS	ENSMUST00000185779.7	novel	0.00	0	6	0	6	n	1.00	1	0	1	0	n	0.00	0	4	0	4	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.17	1	5	1	5	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000023495.14	Pcbp4	chr9	protein_coding	poly(rC) binding protein 4
novel_NIR_19590	chr9	106331206	106332599	+	106331206	106337238	A3SS	ENSMUST00000216379.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000023495.14	Pcbp4	chr9	protein_coding	poly(rC) binding protein 4
novel_NIR_19591	chr9	106337628	106337855	+	106337628	106338192	A3SS	ENSMUST00000215656.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000023495.14	Pcbp4	chr9	protein_coding	poly(rC) binding protein 4
novel_NIR_19592	chr9	106338558	106339048	+	106338323	106339048	A5SS	ENSMUST00000214252.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000023495.14	Pcbp4	chr9	protein_coding	poly(rC) binding protein 4
novel_NIR_19593	chr9	106353181	106353390	-	106353181	106353524	A5SS	ENSMUST00000125850.2	novel	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.29	2	5	2	5	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	ENSMUSG00000023249.16	Parp3	chr9	protein_coding	poly (ADP-ribose) polymerase family, member 3
novel_NIR_19594	chr9	106550937	106554447	-	106550937	106562128	A5SS	ENSMUST00000188892.7	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040813.17	Tex264	chr9	protein_coding	testis expressed gene 264
novel_NIR_19595	chr9	106550937	106554447	-	106550937	106562146	A5SS	ENSMUST00000185257.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040813.17	Tex264	chr9	protein_coding	testis expressed gene 264
novel_NIR_19596	chr9	106550937	106554447	-	106550937	106563034	A5SS	ENSMUST00000188120.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040813.17	Tex264	chr9	protein_coding	testis expressed gene 264
novel_NIR_19597	chr9	106550937	106555152	-	106550937	106562128	A5SS	ENSMUST00000188892.7	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.60	3	2	3	2	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	6	0	6	0	y	-	-	-	-	-	-	ENSMUSG00000040813.17	Tex264	chr9	protein_coding	testis expressed gene 264
novel_NIR_19598	chr9	106550937	106555152	-	106550937	106562146	A5SS	ENSMUST00000185257.7	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	ENSMUSG00000040813.17	Tex264	chr9	protein_coding	testis expressed gene 264
novel_NIR_19599	chr9	106550937	106555152	-	106550937	106563034	A5SS	ENSMUST00000188120.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	ENSMUSG00000040813.17	Tex264	chr9	protein_coding	testis expressed gene 264
novel_NIR_19600	chr9	106555309	106555558	-	106555309	106559067	A5SS	ENSMUST00000190948.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040813.17	Tex264	chr9	protein_coding	testis expressed gene 264
novel_NIR_19601	chr9	106562227	106563034	-	106550937	106563034	A3SS	ENSMUST00000188120.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040813.17	Tex264	chr9	protein_coding	testis expressed gene 264
novel_NIR_19602	chr9	106741746	106747402	-	106715656	106747402	A3SS	ENSMUST00000159620.9	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.60	3	2	3	2	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	3	0	3	0	y	ENSMUSG00000032575.17	Manf	chr9	protein_coding	mesencephalic astrocyte-derived neurotrophic factor
novel_NIR_19603	chr9	106741746	106747402	-	106746560	106747402	3pMXE	ENSMUST00000161272.2	novel	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.12	2	15	2	15	n	0.00	0	4	0	4	n	0.17	3	15	3	15	y	0.00	0	15	0	15	n	0.00	0	14	0	14	n	0.09	1	10	1	10	n	0.08	1	12	1	12	n	0.11	1	8	1	8	n	0.33	3	6	3	6	y	0.30	3	7	3	7	y	ENSMUSG00000032575.17	Manf	chr9	protein_coding	mesencephalic astrocyte-derived neurotrophic factor
novel_NIR_19604	chr9	106751507	106753488	+	106751507	106757136	A3SS	ENSMUST00000163657.2	novel	0.25	2	6	2	6	y	0.00	0	6	0	6	n	0.17	1	5	1	5	n	0.00	0	9	0	9	n	1.00	1	0	1	0	n	0.25	2	6	2	6	y	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	ENSMUSG00000040325.17	Dcaf1	chr9	protein_coding	DDB1 and CUL4 associated factor 1
novel_NIR_19605	chr9	106766416	106767360	-	106747471	106767360	A3SS	ENSMUST00000159620.9	novel	0.00	0	15	0	15	n	0.00	0	14	0	14	n	0.00	0	21	0	21	n	0.31	5	11	5	11	y	0.00	0	30	0	30	n	0.00	0	22	0	22	n	0.13	4	26	4	26	n	0.00	0	21	0	21	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	ENSMUSG00000032575.17	Manf	chr9	protein_coding	mesencephalic astrocyte-derived neurotrophic factor
novel_NIR_19606	chr9	106766416	106767360	-	106766465	106767360	A3SS	ENSMUST00000160503.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032575.17	Manf	chr9	protein_coding	mesencephalic astrocyte-derived neurotrophic factor
novel_NIR_19607	chr9	107166595	107166728	-	107166595	107166724	A5SS	ENSMUST00000035194.8	novel	0.00	0	3	0	3	n	0.14	1	6	1	6	n	0.43	3	4	3	4	y	-	-	-	-	-	-	0.20	1	4	1	4	n	1.00	1	0	1	0	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.50	1	1	1	1	n	0.73	8	3	8	3	y	0.00	0	1	0	1	n	0.50	3	3	3	3	y	ENSMUSG00000032577.17	Mapkapk3	chr9	protein_coding	mitogen-activated protein kinase-activated protein kinase 3
novel_NIR_19608	chr9	107170495	107173503	-	107170495	107174131	A5SS	ENSMUST00000168672.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	ENSMUSG00000091366.2	Gm17040	chr9	transcribed_processed_pseudogene	predicted gene 17040
novel_NIR_19609	chr9	107206631	107207904	-	107206631	107207909	A5SS	ENSMUST00000194735.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	6	0	6	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000032579.15	Hemk1	chr9	protein_coding	HemK methyltransferase family member 1
novel_NIR_19610	chr9	107206631	107207904	-	107206631	107215480	A5SS	ENSMUST00000118051.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032579.15	Hemk1	chr9	protein_coding	HemK methyltransferase family member 1
novel_NIR_19611	chr9	107213862	107214238	-	107213862	107214200	A5SS	ENSMUST00000035196.14	novel	0.00	0	37	0	37	n	0.24	5	16	5	16	y	0.00	0	19	0	19	n	0.00	0	46	0	46	n	0.08	3	36	3	36	n	0.05	1	20	1	20	n	0.08	3	36	3	36	n	0.09	2	21	2	21	n	0.00	0	31	0	31	n	0.02	1	50	1	50	n	0.04	1	26	1	26	n	0.02	1	42	1	42	n	ENSMUSG00000032579.15	Hemk1	chr9	protein_coding	HemK methyltransferase family member 1
novel_NIR_19612	chr9	107213862	107215480	-	107206631	107215480	A3SS	ENSMUST00000118051.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032579.15	Hemk1	chr9	protein_coding	HemK methyltransferase family member 1
novel_NIR_19613	chr9	107213862	107215480	-	107214577	107215480	A3SS	ENSMUST00000148165.7	novel	0.12	1	7	1	7	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.20	2	8	2	8	y	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	ENSMUSG00000032579.15	Hemk1	chr9	protein_coding	HemK methyltransferase family member 1
novel_NIR_19614	chr9	107213993	107215480	-	107206631	107215480	A3SS	ENSMUST00000118051.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000032579.15	Hemk1	chr9	protein_coding	HemK methyltransferase family member 1
novel_NIR_19615	chr9	107213993	107215480	-	107214577	107215480	A3SS&ES	ENSMUST00000035196.14	novel	0.00	0	7	0	7	n	0.17	2	10	2	10	y	0.00	0	11	0	11	n	0.17	1	5	1	5	n	0.11	1	8	1	8	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.07	1	14	1	14	n	0.12	1	7	1	7	n	0.00	0	12	0	12	n	ENSMUSG00000032579.15	Hemk1	chr9	protein_coding	HemK methyltransferase family member 1
novel_NIR_19616	chr9	107214577	107215150	-	107214577	107215480	A5SS	ENSMUST00000035196.14	novel	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.22	2	7	2	7	y	0.00	0	12	0	12	n	ENSMUSG00000032579.15	Hemk1	chr9	protein_coding	HemK methyltransferase family member 1
novel_NIR_19617	chr9	107214577	107215573	-	107214577	107215480	5pMXE	ENSMUST00000035196.14	novel	0.36	4	7	4	7	y	0.17	2	10	2	10	y	0.08	1	11	1	11	n	0.50	5	5	5	5	y	0.58	11	8	11	8	y	0.00	0	9	0	9	n	0.39	7	11	7	11	y	0.25	1	3	1	3	n	0.14	1	6	1	6	n	0.07	1	14	1	14	n	0.46	6	7	6	7	y	0.43	9	12	9	12	y	ENSMUSG00000032579.15	Hemk1	chr9	protein_coding	HemK methyltransferase family member 1
novel_NIR_19618	chr9	107440731	107441067	+	107440731	107441028	A3SS	ENSMUST00000193292.2	novel	0.67	6	3	6	3	y	1.00	6	0	6	0	y	0.64	7	4	7	4	y	1.00	13	0	13	0	y	1.00	14	0	14	0	y	1.00	2	0	2	0	y	0.92	12	1	12	1	y	1.00	2	0	2	0	y	1.00	7	0	7	0	y	1.00	18	0	18	0	y	1.00	10	0	10	0	y	1.00	7	0	7	0	y	ENSMUSG00000010054.5	Tusc2	chr9	protein_coding	tumor suppressor 2, mitochondrial calcium regulator
novel_NIR_19619	chr9	107441112	107441545	-	107441112	107443723	A5SS	ENSMUST00000181099.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000097099.3	Gm9917	chr9	lncRNA	predicted gene 9917
novel_NIR_19620	chr9	107441112	107441545	-	107441112	107445525	A5SS	ENSMUST00000180865.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000097099.3	Gm9917	chr9	lncRNA	predicted gene 9917
novel_NIR_19621	chr9	107444067	107445519	-	107444067	107445525	A5SS	ENSMUST00000181099.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000097099.3	Gm9917	chr9	lncRNA	predicted gene 9917
novel_NIR_19622	chr9	107446470	107447303	+	107446628	107447303	5pMXE	ENSMUST00000194794.2	novel	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.00	0	6	0	6	n	0.12	1	7	1	7	n	0.18	2	9	2	9	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	ENSMUSG00000010047.13	Hyal2	chr9	protein_coding	hyaluronoglucosaminidase 2
novel_NIR_19623	chr9	107454277	107454762	+	107454277	107455527	A3SS	ENSMUST00000123005.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.75	6	2	6	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	n	ENSMUSG00000010051.16	Hyal1	chr9	protein_coding	hyaluronoglucosaminidase 1
novel_NIR_19624	chr9	107454277	107454783	+	107454277	107455527	A3SS	ENSMUST00000123005.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000010051.16	Hyal1	chr9	protein_coding	hyaluronoglucosaminidase 1
novel_NIR_19625	chr9	107454931	107455527	+	107454277	107455527	A5SS	ENSMUST00000123005.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	ENSMUSG00000010051.16	Hyal1	chr9	protein_coding	hyaluronoglucosaminidase 1
novel_NIR_19626	chr9	107455348	107455527	+	107454277	107455527	A5SS	ENSMUST00000123005.8	novel	1.00	38	0	38	0	y	1.00	21	0	21	0	y	0.97	36	1	36	1	y	1.00	45	0	45	0	y	0.98	62	1	62	1	y	1.00	19	0	19	0	y	0.95	42	2	42	2	y	1.00	30	0	30	0	y	1.00	35	0	35	0	y	1.00	34	0	34	0	y	1.00	22	0	22	0	y	0.96	51	2	51	2	y	ENSMUSG00000010051.16	Hyal1	chr9	protein_coding	hyaluronoglucosaminidase 1
novel_NIR_19627	chr9	107455430	107455527	+	107454277	107455527	A5SS	ENSMUST00000123005.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.80	4	1	4	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	3	0	3	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	ENSMUSG00000010051.16	Hyal1	chr9	protein_coding	hyaluronoglucosaminidase 1
novel_NIR_19628	chr9	107455675	107456020	+	107455675	107456299	A3SS	ENSMUST00000144392.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000010051.16	Hyal1	chr9	protein_coding	hyaluronoglucosaminidase 1
novel_NIR_19629	chr9	107456605	107457656	+	107456584	107457656	A5SS	ENSMUST00000112387.9	novel	0.00	0	14	0	14	n	0.00	0	19	0	19	n	0.00	0	37	0	37	n	0.00	0	17	0	17	n	0.00	0	38	0	38	n	0.19	3	13	3	13	y	0.00	0	32	0	32	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	32	0	32	n	0.00	0	14	0	14	n	0.00	0	19	0	19	n	ENSMUSG00000010051.16	Hyal1	chr9	protein_coding	hyaluronoglucosaminidase 1
novel_NIR_19630	chr9	107458134	107458244	+	107458134	107460335	A3SS	ENSMUST00000149638.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.40	2	3	2	3	y	ENSMUSG00000079334.9	Naa80	chr9	protein_coding	N(alpha)-acetyltransferase 80, NatH catalytic subunit
novel_NIR_19631	chr9	107458134	107458244	+	107458134	107461951	A3SS	ENSMUST00000148440.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	2	2	2	2	y	ENSMUSG00000036091.9	Hyal3	chr9	protein_coding	hyaluronoglucosaminidase 3
novel_NIR_19632	chr9	107458134	107460043	+	107458134	107460335	A3SS	ENSMUST00000149638.8	novel	1.00	2	0	2	0	y	0.89	8	1	8	1	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	7	0	7	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	2	0	2	0	y	0.57	4	3	4	3	y	ENSMUSG00000079334.9	Naa80	chr9	protein_coding	N(alpha)-acetyltransferase 80, NatH catalytic subunit
novel_NIR_19633	chr9	107458134	107460043	+	107458134	107461951	A3SS	ENSMUST00000148440.8	novel	1.00	2	0	2	0	y	1.00	8	0	8	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	0.78	7	2	7	2	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	2	0	2	0	y	0.67	4	2	4	2	y	ENSMUSG00000036091.9	Hyal3	chr9	protein_coding	hyaluronoglucosaminidase 3
novel_NIR_19634	chr9	107458134	107460093	+	107458134	107460335	A3SS	ENSMUST00000149638.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000079334.9	Naa80	chr9	protein_coding	N(alpha)-acetyltransferase 80, NatH catalytic subunit
novel_NIR_19635	chr9	107458134	107460093	+	107458134	107461951	A3SS	ENSMUST00000148440.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000036091.9	Hyal3	chr9	protein_coding	hyaluronoglucosaminidase 3
novel_NIR_19636	chr9	107458535	107460016	+	107456169	107460016	A5SS	ENSMUST00000127380.8	novel	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000079334.9	Naa80	chr9	protein_coding	N(alpha)-acetyltransferase 80, NatH catalytic subunit
novel_NIR_19637	chr9	107458535	107460016	+	107456584	107460016	A5SS	ENSMUST00000130053.8	novel	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000079334.9	Naa80	chr9	protein_coding	N(alpha)-acetyltransferase 80, NatH catalytic subunit
novel_NIR_19638	chr9	107458535	107460016	+	107458535	107461951	A3SS	ENSMUST00000040059.9	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000036091.9	Hyal3	chr9	protein_coding	hyaluronoglucosaminidase 3
novel_NIR_19639	chr9	107468309	107468381	+	107468309	107468767	A3SS	ENSMUST00000195746.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000010048.11	Ifrd2	chr9	protein_coding	interferon-related developmental regulator 2
novel_NIR_19640	chr9	107532345	107532784	-	107532666	107532784	A3SS&ES	ENSMUST00000192211.2	novel	0.09	1	10	1	10	n	0.38	6	10	6	10	y	0.55	6	5	6	5	y	0.00	0	19	0	19	n	0.00	0	18	0	18	n	0.00	0	3	0	3	n	0.00	0	26	0	26	n	0.00	0	12	0	12	n	0.29	4	10	4	10	y	0.00	0	18	0	18	n	0.38	5	8	5	8	y	0.00	0	13	0	13	n	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
novel_NIR_19641	chr9	107532626	107532784	-	107532666	107532784	A3SS	ENSMUST00000192211.2	novel	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	19	0	19	n	0.00	0	18	0	18	n	0.00	0	3	0	3	n	0.00	0	26	0	26	n	0.08	1	12	1	12	n	0.00	0	10	0	10	n	0.00	0	18	0	18	n	0.43	6	8	6	8	y	0.00	0	13	0	13	n	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
novel_NIR_19642	chr9	107532632	107532784	-	107532666	107532784	A3SS	ENSMUST00000192211.2	novel	0.80	39	10	39	10	y	0.77	34	10	34	10	y	0.87	34	5	34	5	y	0.51	20	19	20	19	y	0.69	40	18	40	18	y	0.77	10	3	10	3	y	0.68	54	26	54	26	y	0.70	28	12	28	12	y	0.80	39	10	39	10	y	0.72	47	18	47	18	y	0.81	34	8	34	8	y	0.84	68	13	68	13	y	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
novel_NIR_19643	chr9	107532884	107533013	-	107532884	107533163	A5SS	ENSMUST00000195739.2	novel	0.00	0	10	0	10	n	0.04	1	22	1	22	n	0.05	1	19	1	19	n	0.00	0	16	0	16	n	0.00	0	27	0	27	n	0.22	2	7	2	7	y	0.00	0	18	0	18	n	0.00	0	6	0	6	n	0.00	0	23	0	23	n	0.00	0	20	0	20	n	0.08	2	23	2	23	n	0.11	2	16	2	16	n	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
novel_NIR_19644	chr9	107536443	107536664	-	107536443	107542369	A5SS	ENSMUST00000195843.2	novel	0.03	1	28	1	28	n	0.00	0	18	0	18	n	0.15	5	28	5	28	y	0.00	0	61	0	61	n	0.02	1	49	1	49	n	0.00	0	15	0	15	n	0.00	0	40	0	40	n	0.00	0	30	0	30	n	0.00	0	33	0	33	n	0.00	0	53	0	53	n	0.00	0	31	0	31	n	0.00	0	56	0	56	n	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
novel_NIR_19645	chr9	107536443	107536664	-	107536443	107545914	A5SS	ENSMUST00000192990.6	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	5	0	5	0	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	14	0	14	n	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
novel_NIR_19646	chr9	107536443	107536664	-	107536443	107546052	A5SS	ENSMUST00000194895.6	novel	0.06	1	17	1	17	n	0.00	0	10	0	10	n	0.26	5	14	5	14	y	0.00	0	26	0	26	n	0.03	1	35	1	35	n	0.00	0	18	0	18	n	0.00	0	19	0	19	n	0.00	0	18	0	18	n	0.00	0	21	0	21	n	0.00	0	46	0	46	n	0.00	0	16	0	16	n	0.00	0	114	0	114	n	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
novel_NIR_19647	chr9	107536443	107536664	-	107536443	107546628	A5SS	ENSMUST00000192323.6	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
novel_NIR_19648	chr9	107536443	107541483	-	107536443	107536567	A5SS&ES	ENSMUST00000193495.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
novel_NIR_19649	chr9	107536443	107541483	-	107536443	107545914	A5SS	ENSMUST00000192990.6	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	14	0	14	n	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
novel_NIR_19650	chr9	107536443	107541483	-	107536443	107546628	A5SS	ENSMUST00000192323.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
novel_NIR_19651	chr9	107536443	107541905	-	107536443	107536567	A5SS&ES	ENSMUST00000193495.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	3	3	3	3	y	0.33	1	2	1	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.75	3	1	3	1	y	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.33	1	2	1	2	n	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
novel_NIR_19652	chr9	107536443	107541905	-	107536443	107545914	A5SS	ENSMUST00000192990.6	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.60	3	2	3	2	y	0.50	1	1	1	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.07	1	14	1	14	n	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
novel_NIR_19653	chr9	107536443	107541905	-	107536443	107546052	A5SS	ENSMUST00000194895.6	novel	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.18	3	14	3	14	y	0.04	1	26	1	26	n	0.00	0	35	0	35	n	0.00	0	18	0	18	n	0.14	3	19	3	19	n	0.05	1	18	1	18	n	0.00	0	21	0	21	n	0.00	0	46	0	46	n	0.06	1	16	1	16	n	0.01	1	114	1	114	n	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
novel_NIR_19654	chr9	107536443	107541905	-	107536443	107546628	A5SS	ENSMUST00000192323.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
novel_NIR_19655	chr9	107536443	107546039	-	107536443	107536567	A5SS&ES	ENSMUST00000193495.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.60	3	2	3	2	y	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
novel_NIR_19656	chr9	107536443	107546039	-	107536443	107545914	A5SS&ES	ENSMUST00000192990.6	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.18	3	14	3	14	y	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
novel_NIR_19657	chr9	107536443	107546039	-	107536443	107546628	A5SS	ENSMUST00000192323.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
novel_NIR_19658	chr9	107536663	107536766	-	107536663	107542369	A5SS	ENSMUST00000193495.2	novel	0.00	0	5	0	5	n	0.00	0	7	0	7	n	1.00	2	0	2	0	y	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
novel_NIR_19659	chr9	107536663	107544335	-	107536663	107542369	A5SS&ES	ENSMUST00000193495.2	novel	0.17	1	5	1	5	n	0.36	4	7	4	7	y	1.00	8	0	8	0	y	0.47	7	8	7	8	y	0.47	7	8	7	8	y	0.00	0	5	0	5	n	0.69	9	4	9	4	y	0.00	0	4	0	4	n	0.53	9	8	9	8	y	0.00	0	8	0	8	n	0.40	4	6	4	6	y	0.60	21	14	21	14	y	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
novel_NIR_19660	chr9	107536663	107544503	-	107536663	107542369	A5SS&ES	ENSMUST00000193495.2	novel	0.58	7	5	7	5	y	0.56	9	7	9	7	y	1.00	8	0	8	0	y	0.64	14	8	14	8	y	0.71	20	8	20	8	y	0.58	7	5	7	5	y	0.75	12	4	12	4	y	0.75	12	4	12	4	y	0.68	17	8	17	8	y	0.75	24	8	24	8	y	0.57	8	6	8	6	y	0.48	13	14	13	14	y	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
novel_NIR_19661	chr9	107536663	107545914	-	107536663;107542676	107542369;107545914	ES	ENSMUST00000193495.2	novel	0.00	0	2.5	0	5;0	n	0.00	0	3.5	0	7;0	n	-	-	-	-	-	-	0.00	0	4.0	0	8;0	n	0.00	0	4.0	0	8;0	n	0.00	0	2.5	0	5;0	n	0.00	0	2.0	0	4;0	n	0.00	0	2.0	0	4;0	n	0.00	0	4.0	0	8;0	n	0.00	0	4.0	0	8;0	n	0.00	0	3.0	0	6;0	n	0.20	2	8.0	2	14;2	y	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
novel_NIR_19662	chr9	107536663	107546052	-	107545945	107546052	A3SS&ES	ENSMUST00000192990.6	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	0.20	1	4	1	4	n	0.33	8	16	8	16	y	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
novel_NIR_19663	chr9	107542676	107544335	-	107542676	107545914	A5SS	ENSMUST00000193495.2	novel	1.00	6	0	6	0	y	1.00	7	0	7	0	y	1.00	3	0	3	0	y	1.00	7	0	7	0	y	1.00	13	0	13	0	y	1.00	2	0	2	0	y	1.00	8	0	8	0	y	1.00	9	0	9	0	y	1.00	7	0	7	0	y	1.00	15	0	15	0	y	1.00	6	0	6	0	y	0.87	13	2	13	2	y	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
novel_NIR_19664	chr9	107542676	107544503	-	107542676	107545914	A5SS	ENSMUST00000193495.2	novel	1.00	6	0	6	0	y	1.00	10	0	10	0	y	1.00	22	0	22	0	y	1.00	33	0	33	0	y	1.00	21	0	21	0	y	1.00	8	0	8	0	y	1.00	14	0	14	0	y	1.00	10	0	10	0	y	1.00	10	0	10	0	y	1.00	23	0	23	0	y	1.00	23	0	23	0	y	0.95	36	2	36	2	y	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
novel_NIR_19665	chr9	107561975	107562543	-	107561975	107562524	A5SS	ENSMUST00000080560.9	novel	0.67	2	1	2	1	y	0.00	0	8	0	8	n	0.00	0	34	0	34	n	0.00	0	14	0	14	n	0.00	0	19	0	19	n	0.00	0	21	0	21	n	0.13	3	20	3	20	n	0.31	5	11	5	11	y	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.17	2	10	2	10	y	0.00	0	7	0	7	n	ENSMUSG00000034684.13	Sema3f	chr9	protein_coding	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
novel_NIR_19666	chr9	107561975	107562543	-	107562015	107562543	A3SS	ENSMUST00000194424.6	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	5	0	5	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000034684.13	Sema3f	chr9	protein_coding	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
novel_NIR_19667	chr9	107679082	107710633	-	107689566	107710633	3pMXE	ENSMUST00000194250.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032582.15	Rbm6	chr9	protein_coding	RNA binding motif protein 6
novel_NIR_19668	chr9	107730602	107734015	-	107730602	107737548	A5SS	ENSMUST00000183032.8	novel	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.50	2	2	2	2	y	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	ENSMUSG00000032582.15	Rbm6	chr9	protein_coding	RNA binding motif protein 6
novel_NIR_19669	chr9	107738928	107749402	-	107737658	107749402	A3SS	ENSMUST00000183035.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032582.15	Rbm6	chr9	protein_coding	RNA binding motif protein 6
novel_NIR_19670	chr9	107738928	107749402	-	107738928	107749848	A5SS	ENSMUST00000192474.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000032582.15	Rbm6	chr9	protein_coding	RNA binding motif protein 6
novel_NIR_19671	chr9	107889813	107901302	+	107876226	107901302	A5SS	ENSMUST00000176454.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000093456.8	Gm20662	chr9	protein_coding	predicted gene 20662
novel_NIR_19672	chr9	107889813	107901302	+	107879894	107901302	A5SS	ENSMUST00000175874.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.75	3	1	3	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000032594.12	Ip6k1	chr9	protein_coding	inositol hexaphosphate kinase 1
novel_NIR_19673	chr9	107927976	107928048	+	107927456	107928048	A5SS	ENSMUST00000145330.3	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000070284.11	Gmppb	chr9	protein_coding	GDP-mannose pyrophosphorylase B
novel_NIR_19674	chr9	107955038	107955999	-	107955038	107956468	A5SS	ENSMUST00000174504.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000041528.16	Rnf123	chr9	protein_coding	ring finger protein 123
novel_NIR_19675	chr9	107955038	107955999	-	107955096	107955999	A3SS	ENSMUST00000162355.8	novel	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.21	3	11	3	11	y	0.33	1	2	1	2	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	ENSMUSG00000041528.16	Rnf123	chr9	protein_coding	ring finger protein 123
novel_NIR_19676	chr9	107955113	107956889	-	107955096	107956889	A3SS	ENSMUST00000161673.8	novel	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.47	7	8	7	8	y	0.00	0	5	0	5	n	0.08	1	11	1	11	n	0.20	1	4	1	4	n	0.00	0	14	0	14	n	0.33	6	12	6	12	y	0.00	0	14	0	14	n	0.11	2	17	2	17	n	ENSMUSG00000041528.16	Rnf123	chr9	protein_coding	ring finger protein 123
novel_NIR_19677	chr9	107957729	107958349	+	107957729	107958373	A3SS	ENSMUST00000160184.2	novel	0.07	1	14	1	14	n	0.40	2	3	2	3	y	0.10	2	18	2	18	n	0.38	5	8	5	8	y	0.39	13	20	13	20	y	0.00	0	6	0	6	n	0.76	13	4	13	4	y	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.15	2	11	2	11	y	0.62	10	6	10	6	y	0.12	2	14	2	14	n	ENSMUSG00000032591.16	Mst1	chr9	protein_coding	macrophage stimulating 1 (hepatocyte growth factor-like)
novel_NIR_19678	chr9	107959589	107959691	+	107959520	107959691	A5SS	ENSMUST00000162886.2	novel	-	-	-	-	-	-	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	8	0	8	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	8	0	8	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000032591.16	Mst1	chr9	protein_coding	macrophage stimulating 1 (hepatocyte growth factor-like)
novel_NIR_19679	chr9	107961784	107962027	+	107961784	107961973	A3SS	ENSMUST00000161253.2	novel	0.16	3	16	3	16	y	0.29	6	15	6	15	y	0.00	0	42	0	42	n	0.06	1	15	1	15	n	0.03	1	39	1	39	n	0.00	0	28	0	28	n	0.18	4	18	4	18	y	0.06	1	16	1	16	n	0.20	4	16	4	16	y	0.00	0	19	0	19	n	0.00	0	21	0	21	n	0.14	3	19	3	19	n	ENSMUSG00000032591.16	Mst1	chr9	protein_coding	macrophage stimulating 1 (hepatocyte growth factor-like)
novel_NIR_19680	chr9	107965056	107965460	-	107965113	107965460	A3SS	ENSMUST00000194083.6	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	6	0	6	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000032590.15	Apeh	chr9	protein_coding	acylpeptide hydrolase
novel_NIR_19681	chr9	108130356	108133538	-	108130356	108140680	A5SS	ENSMUST00000171412.7	novel	0.17	1	5	1	5	n	-	-	-	-	-	-	0.11	1	8	1	8	n	0.00	0	9	0	9	n	0.19	4	17	4	17	y	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.22	2	7	2	7	y	0.00	0	2	0	2	n	0.00	0	15	0	15	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	ENSMUSG00000039952.16	Dag1	chr9	protein_coding	dystroglycan 1
novel_NIR_19682	chr9	108130356	108133538	-	108130356	108140979	A5SS	ENSMUST00000191899.6	novel	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	7	0	7	n	0.44	4	5	4	5	y	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.33	2	4	2	4	y	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000039952.16	Dag1	chr9	protein_coding	dystroglycan 1
novel_NIR_19683	chr9	108130356	108152127	-	108130356	108140680	5pMXE	ENSMUST00000171412.7	novel	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.09	1	10	1	10	n	0.09	1	10	1	10	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	15	0	15	n	0.27	3	8	3	8	y	0.00	0	11	0	11	n	ENSMUSG00000039952.16	Dag1	chr9	protein_coding	dystroglycan 1
novel_NIR_19684	chr9	108130356	108152127	-	108130356	108140979	5pMXE	ENSMUST00000191899.6	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.12	1	7	1	7	n	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.43	3	4	3	4	y	0.00	0	2	0	2	n	ENSMUSG00000039952.16	Dag1	chr9	protein_coding	dystroglycan 1
novel_NIR_19685	chr9	108182603	108182921	-	108182627	108182921	A3SS	ENSMUST00000044725.9	novel	0.00	0	13	0	13	n	0.33	2	4	2	4	y	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	ENSMUSG00000039461.13	Tcta	chr9	protein_coding	T cell leukemia translocation altered gene
novel_NIR_19686	chr9	108182613	108182921	-	108182627	108182921	A3SS	ENSMUST00000044725.9	novel	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.25	2	6	2	6	y	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	ENSMUSG00000039461.13	Tcta	chr9	protein_coding	T cell leukemia translocation altered gene
novel_NIR_19687	chr9	108258751	108259908	+	108258751	108261596	A3SS	ENSMUST00000194224.6	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000032612.15	Usp4	chr9	protein_coding	ubiquitin specific peptidase 4 (proto-oncogene)
novel_NIR_19688	chr9	108326984	108327532	-	108326984	108327478	A5SS	ENSMUST00000194633.2	novel	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.21	3	11	3	11	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.25	1	3	1	3	n	ENSMUSG00000032609.13	Klhdc8b	chr9	protein_coding	kelch domain containing 8B
novel_NIR_19689	chr9	108326984;108327691	108327532;108328075	-	108326984	108328075	cassetteExon	ENSMUST00000193286.6	novel	0.15	2.0	11	0;4	11	n	0.18	1.5	7	0;3	7	n	0.60	4.5	3	0;9	3	n	1.00	0.5	0	0;1	0	n	0.29	4.5	11	0;9	11	n	0.20	1.5	6	0;3	6	n	0.16	2.5	13	3;2	13	y	0.00	0.0	4	0;0	4	n	0.50	3.0	3	0;6	3	n	0.20	2.0	8	0;4	8	n	0.39	4.5	7	0;9	7	n	0.14	2.0	12	1;3	12	n	ENSMUSG00000032609.13	Klhdc8b	chr9	protein_coding	kelch domain containing 8B
novel_NIR_19690	chr9	108327691	108328075	-	108326984	108328075	A3SS	ENSMUST00000193286.6	novel	0.27	4	11	4	11	y	0.30	3	7	3	7	y	0.75	9	3	9	3	y	1.00	1	0	1	0	n	0.45	9	11	9	11	y	0.33	3	6	3	6	y	0.13	2	13	2	13	n	0.00	0	4	0	4	n	0.67	6	3	6	3	y	0.33	4	8	4	8	y	0.56	9	7	9	7	y	0.20	3	12	3	12	n	ENSMUSG00000032609.13	Klhdc8b	chr9	protein_coding	kelch domain containing 8B
novel_NIR_19691	chr9	108332072	108332638	-	108332072	108332593	A5SS	ENSMUST00000193895.6	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032609.13	Klhdc8b	chr9	protein_coding	kelch domain containing 8B
novel_NIR_19692	chr9	108332110	108332638	-	108332110	108332593	A5SS	ENSMUST00000193286.6	novel	0.30	3	7	3	7	y	0.15	2	11	2	11	y	0.22	2	7	2	7	y	0.20	2	8	2	8	y	0.19	5	21	5	21	y	0.00	0	7	0	7	n	0.20	3	12	3	12	y	0.00	0	8	0	8	n	0.09	1	10	1	10	n	0.32	7	15	7	15	y	0.00	0	6	0	6	n	0.23	3	10	3	10	y	ENSMUSG00000032609.13	Klhdc8b	chr9	protein_coding	kelch domain containing 8B
novel_NIR_19693	chr9	108332110	108332638	-	108332110	108335876	A5SS	ENSMUST00000192210.6	novel	0.75	3	1	3	1	y	0.50	2	2	2	2	y	0.50	2	2	2	2	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	0.60	3	2	3	2	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.78	7	2	7	2	y	0.00	0	3	0	3	n	1.00	3	0	3	0	y	ENSMUSG00000032609.13	Klhdc8b	chr9	protein_coding	kelch domain containing 8B
novel_NIR_19694	chr9	108332774	108333655	-	108332774	108335876	A5SS	ENSMUST00000193286.6	novel	0.22	4	14	4	14	n	0.25	3	9	3	9	n	0.00	0	18	0	18	n	0.33	4	8	4	8	y	0.21	5	19	5	19	y	0.00	0	9	0	9	n	0.07	1	14	1	14	n	0.50	3	3	3	3	y	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.50	3	3	3	3	y	0.18	2	9	2	9	n	ENSMUSG00000032609.13	Klhdc8b	chr9	protein_coding	kelch domain containing 8B
novel_NIR_19695	chr9	108332774;108333756	108333655;108335876	-	108332774	108335876	cassetteExon	ENSMUST00000193286.6	novel	0.22	4.0	14	4;4	14	y	0.22	2.5	9	3;2	9	y	0.00	0.0	18	0;0	18	n	0.20	2.0	8	4;0	8	n	0.12	2.5	19	5;0	19	n	0.00	0.0	9	0;0	9	n	0.03	0.5	14	1;0	14	n	0.33	1.5	3	3;0	3	n	0.00	0.0	8	0;0	8	n	0.03	0.5	14	0;1	14	n	0.33	1.5	3	3;0	3	n	0.25	3.0	9	2;4	9	y	ENSMUSG00000032609.13	Klhdc8b	chr9	protein_coding	kelch domain containing 8B
novel_NIR_19696	chr9	108333756	108335876	-	108332110	108335876	A3SS	ENSMUST00000192210.6	novel	0.80	4	1	4	1	y	0.50	2	2	2	2	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	3	0	3	n	1.00	4	0	4	0	y	ENSMUSG00000032609.13	Klhdc8b	chr9	protein_coding	kelch domain containing 8B
novel_NIR_19697	chr9	108336035	108338015	-	108336035	108336424	A5SS&ES	ENSMUST00000193286.6	novel	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.12	3	23	3	23	n	0.11	3	25	3	25	n	0.00	0	9	0	9	n	0.18	4	18	4	18	y	0.20	1	4	1	4	n	0.08	1	12	1	12	n	0.00	0	18	0	18	n	0.00	0	7	0	7	n	0.00	0	18	0	18	n	ENSMUSG00000032609.13	Klhdc8b	chr9	protein_coding	kelch domain containing 8B
novel_NIR_19698	chr9	108336035	108338015	-	108336035	108338010	A5SS	ENSMUST00000192160.6	novel	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.21	3	11	3	11	y	0.25	3	9	3	9	y	0.00	0	4	0	4	n	0.33	4	8	4	8	y	0.50	1	1	1	1	n	0.20	1	4	1	4	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	ENSMUSG00000032609.13	Klhdc8b	chr9	protein_coding	kelch domain containing 8B
novel_NIR_19699	chr9	108336035	108338015	-	108336035;108336508	108336424;108338015	ES	ENSMUST00000192196.6	novel	0.00	0	3.5	0	7;0	n	0.00	0	3.0	0	6;0	n	0.00	0	6.0	0	12;0	n	0.21	3	11.5	3	23;0	y	0.19	3	13.0	3	25;1	y	0.00	0	5.5	0	9;2	n	0.31	4	9.0	4	18;0	y	0.33	1	2.0	1	4;0	n	0.12	1	7.5	1	12;3	n	0.00	0	9.0	0	18;0	n	0.00	0	3.5	0	7;0	n	0.00	0	9.0	0	18;0	n	ENSMUSG00000032609.13	Klhdc8b	chr9	protein_coding	kelch domain containing 8B
novel_NIR_19700	chr9	108385398	108385591	+	108385398	108386076	A3SS	ENSMUST00000208162.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000032604.17	Qars	chr9	protein_coding	glutaminyl-tRNA synthetase
novel_NIR_19701	chr9	108392802	108392995	+	108392232	108392995	A5SS	ENSMUST00000208177.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032604.17	Qars	chr9	protein_coding	glutaminyl-tRNA synthetase
novel_NIR_19702	chr9	108395175	108395330	+	108395175	108395902	A3SS	ENSMUST00000192331.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	ENSMUSG00000006673.15	Qrich1	chr9	protein_coding	glutamine-rich 1
novel_NIR_19703	chr9	108395175	108405788	+	108394451	108405788	A5SS	ENSMUST00000195563.6	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.25	2	6	2	6	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000006673.15	Qrich1	chr9	protein_coding	glutamine-rich 1
novel_NIR_19704	chr9	108395175	108405788	+	108395175	108395902	3pMXE	ENSMUST00000192331.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000006673.15	Qrich1	chr9	protein_coding	glutamine-rich 1
novel_NIR_19705	chr9	108396952	108405788	+	108394451	108405788	A5SS	ENSMUST00000195563.6	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.25	2	6	2	6	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000006673.15	Qrich1	chr9	protein_coding	glutamine-rich 1
novel_NIR_19706	chr9	108406117	108407087	+	108406117	108418887	A3SS	ENSMUST00000194385.2	novel	0.60	3	2	3	2	y	0.50	3	3	3	3	y	0.78	7	2	7	2	y	0.50	2	2	2	2	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.50	4	4	4	4	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	0.40	4	6	4	6	y	0.80	4	1	4	1	y	0.75	3	1	3	1	y	ENSMUSG00000006673.15	Qrich1	chr9	protein_coding	glutamine-rich 1
novel_NIR_19707	chr9	108448372	108448696	+	108448372	108448635	A3SS	ENSMUST00000195249.6	novel	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.18	2	9	2	9	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	ENSMUSG00000019039.15	Dalrd3	chr9	protein_coding	DALR anticodon binding domain containing 3
novel_NIR_19708	chr9	108522193	108523131	-	108522193	108526428	A5SS	ENSMUST00000013338.14	novel	0.00	0	26	0	26	n	0.21	6	23	6	23	y	0.03	2	69	2	69	n	0.00	0	43	0	43	n	0.00	0	70	0	70	n	0.00	0	36	0	36	n	0.09	6	61	6	61	n	0.00	0	47	0	47	n	0.00	0	20	0	20	n	0.10	5	43	5	43	n	0.03	1	35	1	35	n	0.08	4	47	4	47	n	ENSMUSG00000064145.13	Arih2	chr9	protein_coding	ariadne RBR E3 ubiquitin protein ligase 2
novel_NIR_19709	chr9	108523295	108526428	-	108497325	108526428	A3SS	ENSMUST00000193197.6	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000064145.13	Arih2	chr9	protein_coding	ariadne RBR E3 ubiquitin protein ligase 2
novel_NIR_19710	chr9	108661531	108673263	+	108661069	108673263	A5SS	ENSMUST00000192307.6	novel	0.00	0	21	0	21	n	0.29	7	17	7	17	y	0.05	2	39	2	39	n	0.08	4	45	4	45	n	0.00	0	43	0	43	n	0.11	4	31	4	31	n	0.07	3	43	3	43	n	0.18	6	28	6	28	y	0.00	0	27	0	27	n	0.03	1	31	1	31	n	0.06	2	29	2	29	n	0.00	0	33	0	33	n	ENSMUSG00000032599.13	Ip6k2	chr9	protein_coding	inositol hexaphosphate kinase 2
novel_NIR_19711	chr9	108673982	108675309	+	108673595	108675309	A5SS	ENSMUST00000085018.6	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000032599.13	Ip6k2	chr9	protein_coding	inositol hexaphosphate kinase 2
novel_NIR_19712	chr9	108673982	108675309	+	108673982	108674406	3pMXE	ENSMUST00000192226.6	novel	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	ENSMUSG00000032599.13	Ip6k2	chr9	protein_coding	inositol hexaphosphate kinase 2
novel_NIR_19713	chr9	108673982	108675470	+	108673982	108674406	3pMXE	ENSMUST00000192226.6	novel	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.64	7	4	7	4	y	0.12	1	7	1	7	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.40	2	3	2	3	y	0.00	0	5	0	5	n	0.00	0	10	0	10	n	ENSMUSG00000032599.13	Ip6k2	chr9	protein_coding	inositol hexaphosphate kinase 2
novel_NIR_19714	chr9	108673982	108675470	+	108675377	108675470	A5SS&ES	ENSMUST00000085018.6	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.58	7	5	7	5	y	0.09	1	10	1	10	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	ENSMUSG00000032599.13	Ip6k2	chr9	protein_coding	inositol hexaphosphate kinase 2
novel_NIR_19715	chr9	108735707	108736200	+	108735707;108736118	108736023;108736200	ES	ENSMUST00000192507.7	novel	0.00	0	9.5	0	6;13	n	0.00	0	3.5	0	4;3	n	0.00	0	7.0	0	8;6	n	0.00	0	4.5	0	7;2	n	0.00	0	11.5	0	13;10	n	0.00	0	2.0	0	1;3	n	0.00	0	8.0	0	7;9	n	0.21	2	7.5	2	5;10	y	0.00	0	5.5	0	6;5	n	0.00	0	6.0	0	5;7	n	0.00	0	3.0	0	3;3	n	0.00	0	1.5	0	3;0	n	ENSMUSG00000023259.18	Slc26a6	chr9	protein_coding	solute carrier family 26, member 6
novel_NIR_19716	chr9	108838739	108839517	+	108837538	108839517	A5SS	ENSMUST00000198140.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000025648.19	Pfkfb4	chr9	protein_coding	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4
novel_NIR_19717	chr9	108880577	108885046	+	108882048	108885046	5pMXE	ENSMUST00000198591.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025647.17	Shisa5	chr9	protein_coding	shisa family member 5
novel_NIR_19718	chr9	108880577	108885046	+	108884147	108885046	5pMXE	ENSMUST00000197194.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025647.17	Shisa5	chr9	protein_coding	shisa family member 5
novel_NIR_19719	chr9	108880577	108885046	+	108884331	108885046	5pMXE	ENSMUST00000200366.5	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000025647.17	Shisa5	chr9	protein_coding	shisa family member 5
novel_NIR_19720	chr9	108900476	108900786	-	108898465	108900786	A3SS	ENSMUST00000160217.8	novel	0.00	0	12	0	12	n	0.06	1	15	1	15	n	0.16	3	16	3	16	y	0.33	5	10	5	10	y	0.08	2	22	2	22	n	0.06	1	15	1	15	n	0.06	1	15	1	15	n	0.17	3	15	3	15	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.27	3	8	3	8	y	0.00	0	30	0	30	n	ENSMUSG00000025646.10	Atrip	chr9	protein_coding	ATR interacting protein
novel_NIR_19721	chr9	108901805	108902767	-	108901805	108902727	A5SS	ENSMUST00000160928.5	novel	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.75	3	1	3	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.25	1	3	1	3	n	ENSMUSG00000025646.10	Atrip	chr9	protein_coding	ATR interacting protein
novel_NIR_19722	chr9	108901805	108902767	-	108901805	108902823	A5SS	ENSMUST00000160217.8	novel	0.10	1	9	1	9	n	0.00	0	2	0	2	n	0.00	0	16	0	16	n	0.12	1	7	1	7	n	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.09	1	10	1	10	n	0.00	0	11	0	11	n	0.15	3	17	3	17	y	0.06	1	15	1	15	n	0.00	0	17	0	17	n	0.10	1	9	1	9	n	ENSMUSG00000025646.10	Atrip	chr9	protein_coding	ATR interacting protein
novel_NIR_19723	chr9	108923618	108928339	+	108924713	108928339	5pMXE	ENSMUST00000072093.13	novel	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	16	0	16	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.17	2	10	2	10	y	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	16	0	16	n	ENSMUSG00000053646.14	Plxnb1	chr9	protein_coding	plexin B1
novel_NIR_19724	chr9	108923618	108928339	+	108925270	108928339	5pMXE	ENSMUST00000131462.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000053646.14	Plxnb1	chr9	protein_coding	plexin B1
novel_NIR_19725	chr9	108923618	108928339	+	108925882	108928339	5pMXE	ENSMUST00000130366.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000053646.14	Plxnb1	chr9	protein_coding	plexin B1
novel_NIR_19726	chr9	108923942	108928339	+	108924713	108928339	5pMXE	ENSMUST00000072093.13	novel	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	16	0	16	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.44	4	5	4	5	y	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.50	1	1	1	1	n	0.00	0	16	0	16	n	ENSMUSG00000053646.14	Plxnb1	chr9	protein_coding	plexin B1
novel_NIR_19727	chr9	108923942	108928339	+	108925270	108928339	5pMXE	ENSMUST00000131462.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000053646.14	Plxnb1	chr9	protein_coding	plexin B1
novel_NIR_19728	chr9	108923942	108928339	+	108925882	108928339	5pMXE	ENSMUST00000130366.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000053646.14	Plxnb1	chr9	protein_coding	plexin B1
novel_NIR_19729	chr9	108925302	108928339	+	108924713	108928339	A5SS	ENSMUST00000072093.13	novel	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.06	1	16	1	16	n	0.33	2	4	2	4	y	0.09	1	10	1	10	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	16	0	16	n	ENSMUSG00000053646.14	Plxnb1	chr9	protein_coding	plexin B1
novel_NIR_19730	chr9	108925302	108928339	+	108925270	108928339	A5SS	ENSMUST00000131462.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.50	1	1	1	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000053646.14	Plxnb1	chr9	protein_coding	plexin B1
novel_NIR_19731	chr9	108925302	108928339	+	108925882	108928339	5pMXE	ENSMUST00000130366.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.50	2	2	2	2	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000053646.14	Plxnb1	chr9	protein_coding	plexin B1
novel_NIR_19732	chr9	108932841	108933096	+	108932837	108933096	A5SS	ENSMUST00000072093.13	novel	0.12	5	36	5	36	n	0.23	8	27	8	27	y	0.10	8	70	8	70	n	0.22	12	43	12	43	y	0.10	12	113	12	113	n	0.18	11	51	11	51	y	0.07	4	52	4	52	n	0.13	10	65	10	65	n	0.13	5	33	5	33	n	0.07	4	51	4	51	n	0.15	5	28	5	28	y	0.03	2	72	2	72	n	ENSMUSG00000053646.14	Plxnb1	chr9	protein_coding	plexin B1
novel_NIR_19733	chr9	108934448	108934659	+	108934476	108934659	A5SS	ENSMUST00000072093.13	novel	0.20	8	32	8	32	y	0.13	4	26	4	26	n	0.19	13	56	13	56	y	0.20	11	43	11	43	y	0.17	16	78	16	78	y	0.10	7	60	7	60	n	0.13	6	40	6	40	n	0.18	13	61	13	61	y	0.13	3	20	3	20	n	0.12	5	35	5	35	n	0.20	5	20	5	20	y	0.17	13	62	13	62	y	ENSMUSG00000053646.14	Plxnb1	chr9	protein_coding	plexin B1
novel_NIR_19734	chr9	109662363	109664328	+	109662363	109664338	A3SS	ENSMUST00000200345.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000032478.15	Nme6	chr9	protein_coding	NME/NM23 nucleoside diphosphate kinase 6
novel_NIR_19735	chr9	109662363	109664328	+	109662363	109668676	A3SS	ENSMUST00000200091.5	novel	0.00	0	8	0	8	n	0.00	0	17	0	17	n	0.00	0	32	0	32	n	0.12	1	7	1	7	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.25	4	12	4	12	y	0.20	1	4	1	4	n	0.00	0	14	0	14	n	0.20	2	8	2	8	y	0.12	1	7	1	7	n	ENSMUSG00000032478.15	Nme6	chr9	protein_coding	NME/NM23 nucleoside diphosphate kinase 6
novel_NIR_19736	chr9	109662363	109664328	+	109662363	109670544	A3SS	ENSMUST00000196797.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000032478.15	Nme6	chr9	protein_coding	NME/NM23 nucleoside diphosphate kinase 6
novel_NIR_19737	chr9	109662363	109664391	+	109662363	109664338	A3SS	ENSMUST00000200345.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	9	0	9	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	7	0	7	0	y	1.00	4	0	4	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000032478.15	Nme6	chr9	protein_coding	NME/NM23 nucleoside diphosphate kinase 6
novel_NIR_19738	chr9	109662363	109664391	+	109662363	109668676	A3SS	ENSMUST00000200091.5	novel	0.00	0	8	0	8	n	0.00	0	17	0	17	n	0.22	9	32	9	32	y	0.00	0	7	0	7	n	0.15	2	11	2	11	y	0.41	7	10	7	10	y	0.29	4	10	4	10	y	0.20	3	12	3	12	y	0.00	0	4	0	4	n	0.07	1	14	1	14	n	0.00	0	8	0	8	n	0.22	2	7	2	7	y	ENSMUSG00000032478.15	Nme6	chr9	protein_coding	NME/NM23 nucleoside diphosphate kinase 6
novel_NIR_19739	chr9	109662363	109664391	+	109662363	109670544	A3SS	ENSMUST00000196797.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.82	9	2	9	2	y	-	-	-	-	-	-	1.00	2	0	2	0	y	0.78	7	2	7	2	y	1.00	4	0	4	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000032478.15	Nme6	chr9	protein_coding	NME/NM23 nucleoside diphosphate kinase 6
novel_NIR_19740	chr9	109708335	109708905	+	109708335	109708902	A3SS	ENSMUST00000094324.8	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.15	2	11	2	11	y	0.20	1	4	1	4	n	0.11	1	8	1	8	n	0.00	0	2	0	2	n	0.27	3	8	3	8	y	0.12	1	7	1	7	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	ENSMUSG00000032477.15	Cdc25a	chr9	protein_coding	cell division cycle 25A
novel_NIR_19741	chr9	109711394	109712557	+	109710645	109712557	A5SS	ENSMUST00000094324.8	novel	0.00	0	5	0	5	n	0.50	2	2	2	2	y	0.00	0	16	0	16	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	ENSMUSG00000032477.15	Cdc25a	chr9	protein_coding	cell division cycle 25A
novel_NIR_19742	chr9	109713261	109713387	+	109713261	109713411	A3SS	ENSMUST00000094324.8	novel	0.09	1	10	1	10	n	0.00	0	5	0	5	n	0.00	0	15	0	15	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.33	2	4	2	4	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	ENSMUSG00000032477.15	Cdc25a	chr9	protein_coding	cell division cycle 25A
novel_NIR_19743	chr9	109761008	109792429	+	109761008	109807918	A3SS	ENSMUST00000035055.15	novel	0.00	0	15	0	15	n	0.00	0	1	0	1	n	0.00	0	15	0	15	n	0.00	0	19	0	19	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.17	3	15	3	15	y	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	ENSMUSG00000032479.16	Map4	chr9	protein_coding	microtubule-associated protein 4
novel_NIR_19744	chr9	109900207	109907071	+	109898053	109907071	A5SS	ENSMUST00000199498.5	novel	0.00	0	7	0	7	n	0.67	2	1	2	1	y	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.08	1	11	1	11	n	-	-	-	-	-	-	0.06	1	15	1	15	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	ENSMUSG00000032479.16	Map4	chr9	protein_coding	microtubule-associated protein 4
novel_NIR_19745	chr9	109913951	109914018	-	109913714	109914018	A3SS	ENSMUST00000199332.5	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032480.18	Dhx30	chr9	protein_coding	DEAH (Asp-Glu-Ala-His) box polypeptide 30
novel_NIR_19746	chr9	110180086	110182014	+	110162417	110182014	A5SS	ENSMUST00000198976.5	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.60	3	2	3	2	y	0.67	2	1	2	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	ENSMUSG00000032485.15	Scap	chr9	protein_coding	SREBF chaperone
novel_NIR_19747	chr9	110180086	110182014	+	110162830	110182014	A5SS	ENSMUST00000198761.5	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.67	2	1	2	1	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.80	4	1	4	1	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	ENSMUSG00000032485.15	Scap	chr9	protein_coding	SREBF chaperone
novel_NIR_19748	chr9	110180086	110182014	+	110162834	110182014	A5SS	ENSMUST00000197630.3	novel	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.33	3	6	3	6	y	0.17	2	10	2	10	y	0.25	1	3	1	3	n	0.00	0	14	0	14	n	0.12	1	7	1	7	n	0.00	0	5	0	5	n	0.33	4	8	4	8	y	0.38	3	5	3	5	y	0.19	3	13	3	13	y	ENSMUSG00000032485.15	Scap	chr9	protein_coding	SREBF chaperone
novel_NIR_19749	chr9	110180086	110182014	+	110173409	110182014	A5SS	ENSMUST00000199709.3	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	3	3	3	3	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	ENSMUSG00000032485.15	Scap	chr9	protein_coding	SREBF chaperone
novel_NIR_19750	chr9	110187857	110191462	+	110190821	110191462	5pMXE	ENSMUST00000199886.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000032485.15	Scap	chr9	protein_coding	SREBF chaperone
novel_NIR_19751	chr9	110201422	110202081	+	110201422	110202100	A3SS	ENSMUST00000198976.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	8	0	8	0	y	ENSMUSG00000032485.15	Scap	chr9	protein_coding	SREBF chaperone
novel_NIR_19752	chr9	110227263	110235808	-	110227263	110237102	A5SS	ENSMUST00000040021.12	novel	0.00	0	17	0	17	n	0.00	0	12	0	12	n	0.00	0	26	0	26	n	0.17	2	10	2	10	y	0.00	0	19	0	19	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.00	0	19	0	19	n	0.00	0	15	0	15	n	0.00	0	18	0	18	n	0.00	0	19	0	19	n	0.00	0	15	0	15	n	ENSMUSG00000036057.12	Ptpn23	chr9	protein_coding	protein tyrosine phosphatase, non-receptor type 23
novel_NIR_19753	chr9	110268126	110271078	-	110268126	110275742	A5SS	ENSMUST00000068025.13	novel	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.18	2	9	2	9	y	0.00	0	10	0	10	n	0.00	0	11	0	11	n	ENSMUSG00000054792.16	Klhl18	chr9	protein_coding	kelch-like 18
novel_NIR_19754	chr9	110268126	110271078	-	110268126	110279788	A5SS	ENSMUST00000197336.5	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000054792.16	Klhl18	chr9	protein_coding	kelch-like 18
novel_NIR_19755	chr9	110302817	110305534	-	110284555	110305534	A3SS	ENSMUST00000068025.13	novel	0.12	1	7	1	7	n	-	-	-	-	-	-	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.06	1	17	1	17	n	0.25	2	6	2	6	y	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	ENSMUSG00000054792.16	Klhl18	chr9	protein_coding	kelch-like 18
novel_NIR_19756	chr9	110457571	110457642	-	110457571	110457687	A5SS	ENSMUST00000133191.8	novel	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	16	0	16	n	0.00	0	2	0	2	n	0.38	3	5	3	5	y	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	ENSMUSG00000056724.16	Nbeal2	chr9	protein_coding	neurobeachin-like 2
novel_NIR_19757	chr9	110485726	110537514	+	110485726;110529811	110529741;110537514	ES	ENSMUST00000196347.5	novel	-	-	-	-	-	-	0.00	0	1.5	0	2;1	n	0.00	0	1.5	0	1;2	n	0.00	0	0.5	0	1;0	n	0.00	0	1.5	0	1;2	n	0.80	2	0.5	2	1;0	y	0.00	0	1.5	0	1;2	n	0.00	0	2.0	0	0;4	n	0.00	0	2.0	0	1;3	n	0.00	0	0.5	0	0;1	n	0.00	0	2.5	0	2;3	n	1.00	1	0.0	1	0;0	n	ENSMUSG00000019659.9	Ccdc12	chr9	protein_coding	coiled-coil domain containing 12
novel_NIR_19758	chr9	110521451	110537420	+	110521451	110529741	3pMXE	ENSMUST00000196092.5	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	ENSMUSG00000019659.9	Ccdc12	chr9	protein_coding	coiled-coil domain containing 12
novel_NIR_19759	chr9	110560708	110570987	-	110560708	110571007	A5SS	ENSMUST00000199791.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032492.15	Pth1r	chr9	protein_coding	parathyroid hormone 1 receptor
novel_NIR_19760	chr9	110560708	110570987	-	110560708	110571294	A5SS	ENSMUST00000198865.5	novel	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.57	4	3	4	3	y	0.00	0	1	0	1	n	0.25	2	6	2	6	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	ENSMUSG00000032492.15	Pth1r	chr9	protein_coding	parathyroid hormone 1 receptor
novel_NIR_19761	chr9	110560708	110570987	-	110560708	110573799	A5SS	ENSMUST00000199862.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032492.15	Pth1r	chr9	protein_coding	parathyroid hormone 1 receptor
novel_NIR_19762	chr9	110571413	110572083	-	110571413	110572523	A5SS	ENSMUST00000166716.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032492.15	Pth1r	chr9	protein_coding	parathyroid hormone 1 receptor
novel_NIR_19763	chr9	110571413	110572083	-	110571413	110573799	A5SS	ENSMUST00000198865.5	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	ENSMUSG00000032492.15	Pth1r	chr9	protein_coding	parathyroid hormone 1 receptor
novel_NIR_19764	chr9	110573855	110573998	-	110573855	110576037	A5SS	ENSMUST00000198865.5	novel	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	0.17	1	5	1	5	n	0.00	0	4	0	4	n	ENSMUSG00000032492.15	Pth1r	chr9	protein_coding	parathyroid hormone 1 receptor
novel_NIR_19765	chr9	110703090	110704696	-	110703094	110704696	A3SS	ENSMUST00000050958.9	novel	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.00	0	12	0	12	n	-	-	-	-	-	-	0.20	3	12	3	12	y	0.00	0	7	0	7	n	0.10	1	9	1	9	n	0.09	1	10	1	10	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	ENSMUSG00000049555.11	Tmie	chr9	protein_coding	transmembrane inner ear
novel_NIR_19766	chr9	110703090	110704696	-	110704605	110704696	3pMXE	ENSMUST00000198062.2	novel	0.00	0	2	0	2	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.21	3	11	3	11	y	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.11	1	8	1	8	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000049555.11	Tmie	chr9	protein_coding	transmembrane inner ear
novel_NIR_19767	chr9	110703094	110704496	-	110703094	110704696	A5SS	ENSMUST00000050958.9	novel	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.14	2	12	2	12	n	-	-	-	-	-	-	0.14	2	12	2	12	n	0.00	0	7	0	7	n	0.18	2	9	2	9	y	0.29	4	10	4	10	y	0.23	3	10	3	10	y	0.13	2	13	2	13	n	ENSMUSG00000049555.11	Tmie	chr9	protein_coding	transmembrane inner ear
novel_NIR_19768	chr9	110703166	110704696	-	110703094	110704696	A3SS	ENSMUST00000050958.9	novel	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.14	2	12	2	12	n	1.00	1	0	1	0	n	0.14	2	12	2	12	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.23	3	10	3	10	y	0.00	0	10	0	10	n	0.07	1	13	1	13	n	ENSMUSG00000049555.11	Tmie	chr9	protein_coding	transmembrane inner ear
novel_NIR_19769	chr9	110703166	110704696	-	110704605	110704696	3pMXE	ENSMUST00000198062.2	novel	0.00	0	2	0	2	n	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.22	2	7	2	7	y	1.00	1	0	1	0	n	0.15	2	11	2	11	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.27	3	8	3	8	y	0.00	0	2	0	2	n	0.33	1	2	1	2	n	ENSMUSG00000049555.11	Tmie	chr9	protein_coding	transmembrane inner ear
novel_NIR_19770	chr9	110703245	110704696	-	110703094	110704696	A3SS	ENSMUST00000050958.9	novel	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.00	0	12	0	12	n	-	-	-	-	-	-	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.10	1	9	1	9	n	0.09	1	10	1	10	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	ENSMUSG00000049555.11	Tmie	chr9	protein_coding	transmembrane inner ear
novel_NIR_19771	chr9	110703245	110704696	-	110704605	110704696	3pMXE	ENSMUST00000198062.2	novel	0.00	0	2	0	2	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	11	0	11	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.11	1	8	1	8	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000049555.11	Tmie	chr9	protein_coding	transmembrane inner ear
novel_NIR_19772	chr9	110711891;110712995	110712923;110713086	+	110711891	110713086	cassetteExon	ENSMUST00000084926.9	novel	1.00	0.5	0	1;0	0	n	0.20	0.5	2	0;1	2	n	0.00	0.0	4	0;0	4	n	0.00	0.0	4	0;0	4	n	0.11	0.5	4	1;0	4	n	-	-	-	-	-	-	0.33	0.5	1	1;0	1	n	0.00	0.0	4	0;0	4	n	0.50	2.0	2	2;2	2	y	0.20	0.5	2	1;0	2	n	-	-	-	-	-	-	0.09	0.5	5	1;0	5	n	ENSMUSG00000044037.16	Als2cl	chr9	protein_coding	ALS2 C-terminal like
novel_NIR_19773	chr9	110712995	110713083	+	110711891	110713083	A5SS	ENSMUST00000130386.8	novel	0.12	1	7	1	7	n	0.00	0	9	0	9	n	0.00	0	18	0	18	n	0.24	5	16	5	16	y	0.12	3	22	3	22	n	0.33	1	2	1	2	n	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.08	1	12	1	12	n	0.12	2	14	2	14	n	0.09	1	10	1	10	n	0.00	0	14	0	14	n	ENSMUSG00000044037.16	Als2cl	chr9	protein_coding	ALS2 C-terminal like
novel_NIR_19774	chr9	110719232	110719369	+	110719251	110719369	A5SS	ENSMUST00000084926.9	novel	0.00	0	19	0	19	n	0.07	1	14	1	14	n	0.00	0	18	0	18	n	0.00	0	17	0	17	n	0.00	0	35	0	35	n	0.00	0	4	0	4	n	0.23	6	20	6	20	y	0.00	0	9	0	9	n	0.08	1	11	1	11	n	0.00	0	25	0	25	n	0.11	2	17	2	17	n	0.00	0	25	0	25	n	ENSMUSG00000044037.16	Als2cl	chr9	protein_coding	ALS2 C-terminal like
novel_NIR_19775	chr9	110719247	110719369	+	110719251	110719369	A5SS	ENSMUST00000084926.9	novel	0.00	0	19	0	19	n	0.07	1	14	1	14	n	0.14	3	18	3	18	n	0.29	7	17	7	17	y	0.17	7	35	7	35	y	0.00	0	4	0	4	n	0.00	0	20	0	20	n	0.00	0	9	0	9	n	0.27	4	11	4	11	y	0.19	6	25	6	25	y	0.00	0	17	0	17	n	0.04	1	25	1	25	n	ENSMUSG00000044037.16	Als2cl	chr9	protein_coding	ALS2 C-terminal like
novel_NIR_19776	chr9	110723228	110723391	+	110723228	110723634	A3SS	ENSMUST00000156673.2	novel	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.20	1	4	1	4	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.08	1	11	1	11	n	0.00	0	7	0	7	n	0.17	2	10	2	10	y	ENSMUSG00000044037.16	Als2cl	chr9	protein_coding	ALS2 C-terminal like
novel_NIR_19777	chr9	110815623	110815810	+	110815623	110816161	A3SS	ENSMUST00000185439.2	novel	1.00	52	0	52	0	y	1.00	24	0	24	0	y	1.00	2	0	2	0	y	1.00	45	0	45	0	y	1.00	35	0	35	0	y	1.00	45	0	45	0	y	1.00	56	0	56	0	y	1.00	52	0	52	0	y	1.00	64	0	64	0	y	1.00	51	0	51	0	y	1.00	18	0	18	0	y	1.00	24	0	24	0	y	ENSMUSG00000102060.2	1700061E17Rik	chr9	lncRNA	RIKEN cDNA 1700061E17 gene
novel_NIR_19778	chr9	110815623	110815996	+	110815623	110816161	A3SS	ENSMUST00000185439.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	21	0	21	0	y	ENSMUSG00000102060.2	1700061E17Rik	chr9	lncRNA	RIKEN cDNA 1700061E17 gene
novel_NIR_19779	chr9	110833957	110834906	+	110833957	110834920	A3SS	ENSMUST00000197321.5	novel	0.33	1	2	1	2	n	0.25	1	3	1	3	n	0.35	8	15	8	15	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.09	1	10	1	10	n	0.00	0	5	0	5	n	0.00	0	16	0	16	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.60	3	2	3	2	y	ENSMUSG00000057802.9	Gm10030	chr9	lncRNA	predicted gene 10030
novel_NIR_19780	chr9	110835006	110835845	+	110835006;110835498	110835411;110835845	ES	ENSMUST00000197321.5	novel	0.00	0	2.5	0	1;4	n	0.00	0	4.5	0	7;2	n	0.06	1	14.5	1	22;7	n	0.00	0	4.5	0	6;3	n	0.15	3	16.5	3	9;24	y	0.22	2	7.0	2	9;5	y	0.27	2	5.5	2	7;4	y	0.00	0	5.5	0	4;7	n	0.00	0	3.0	0	5;1	n	0.00	0	3.0	0	2;4	n	0.00	0	7.0	0	8;6	n	0.00	0	5.5	0	6;5	n	ENSMUSG00000057802.9	Gm10030	chr9	lncRNA	predicted gene 10030
novel_NIR_19781	chr9	110835498	110836521	+	110835498	110835845	3pMXE	ENSMUST00000080872.5	novel	0.20	1	4	1	4	n	0.33	1	2	1	2	n	0.46	6	7	6	7	y	0.25	1	3	1	3	n	0.17	5	24	5	24	y	0.17	1	5	1	5	n	0.43	3	4	3	4	y	0.36	4	7	4	7	y	0.50	1	1	1	1	n	0.20	1	4	1	4	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	ENSMUSG00000057802.9	Gm10030	chr9	lncRNA	predicted gene 10030
novel_NIR_19782	chr9	110835498	110836521	+	110835498;110836007	110835845;110836521	ES	ENSMUST00000197321.5	novel	0.20	1	4.0	1	4;4	n	0.29	1	2.5	1	2;3	n	0.43	6	8.0	6	7;9	y	0.17	1	5.0	1	3;7	n	0.20	5	20.0	5	24;16	y	0.11	1	8.5	1	5;12	n	0.33	3	6.0	3	4;8	y	0.31	4	9.0	4	7;11	y	0.67	1	0.5	1	1;0	n	0.17	1	5.0	1	4;6	n	0.00	0	4.0	0	6;2	n	0.00	0	7.0	0	5;9	n	ENSMUSG00000057802.9	Gm10030	chr9	lncRNA	predicted gene 10030
novel_NIR_19783	chr9	110990457	111006310	+	110990457	110999324	A3SS&ES	ENSMUST00000197256.5	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000032497.20	Lrrfip2	chr9	protein_coding	leucine rich repeat (in FLII) interacting protein 2
novel_NIR_19784	chr9	110990457	111006310	+	110990457	111009284	A3SS	ENSMUST00000196703.6	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000032497.20	Lrrfip2	chr9	protein_coding	leucine rich repeat (in FLII) interacting protein 2
novel_NIR_19785	chr9	110996312	110999324	+	110990457	110999324	A5SS	ENSMUST00000197256.5	novel	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	11	0	11	0	y	1.00	2	0	2	0	y	1.00	12	0	12	0	y	1.00	2	0	2	0	y	1.00	21	0	21	0	y	1.00	12	0	12	0	y	1.00	2	0	2	0	y	1.00	9	0	9	0	y	1.00	1	0	1	0	n	1.00	5	0	5	0	y	ENSMUSG00000032497.20	Lrrfip2	chr9	protein_coding	leucine rich repeat (in FLII) interacting protein 2
novel_NIR_19786	chr9	110996312	110999324	+	110996312	111002149	A3SS	ENSMUST00000239186.2	novel	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	11	0	11	0	n	1.00	2	0	2	0	y	1.00	12	0	12	0	n	1.00	2	0	2	0	y	1.00	21	0	21	0	y	1.00	12	0	12	0	y	1.00	2	0	2	0	y	1.00	9	0	9	0	y	1.00	1	0	1	0	n	1.00	5	0	5	0	y	ENSMUSG00000032497.20	Lrrfip2	chr9	protein_coding	leucine rich repeat (in FLII) interacting protein 2
novel_NIR_19787	chr9	110996312	110999324	+	110996312	111017830	A3SS	ENSMUST00000035078.13	novel	0.35	6	11	6	11	y	0.09	1	10	1	10	n	0.55	11	9	11	9	y	0.09	2	21	2	21	n	0.44	12	15	12	15	y	0.33	2	4	2	4	y	0.53	21	19	21	19	y	0.50	12	12	12	12	y	0.14	2	12	2	12	n	0.39	9	14	9	14	y	0.03	1	30	1	30	n	0.19	5	22	5	22	y	ENSMUSG00000032497.20	Lrrfip2	chr9	protein_coding	leucine rich repeat (in FLII) interacting protein 2
novel_NIR_19788	chr9	110996312;110999392	110999324;111011887	+	110996312;111009340	111002149;111011887	MXE	ENSMUST00000239186.2	novel	1.00	3.0	0.0	6;0	0;0	n	1.00	0.5	0.0	1;0	0;0	n	1.00	7.0	0.0	11;3	0;0	y	1.00	1.0	0.0	2;0	0;0	n	1.00	6.5	0.0	12;1	0;0	n	1.00	1.0	0.0	2;0	0;0	n	0.84	10.5	2.0	21;0	0;4	n	1.00	6.0	0.0	12;0	0;0	n	1.00	1.0	0.0	2;0	0;0	n	0.90	4.5	0.5	9;0	0;1	n	1.00	0.5	0.0	1;0	0;0	n	1.00	2.5	0.0	5;0	0;0	n	ENSMUSG00000032497.20	Lrrfip2	chr9	protein_coding	leucine rich repeat (in FLII) interacting protein 2
novel_NIR_19789	chr9	110999392	111011887	+	110999392	111002149	A3SS&ES	ENSMUST00000197256.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	10	0	10	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000032497.20	Lrrfip2	chr9	protein_coding	leucine rich repeat (in FLII) interacting protein 2
novel_NIR_19790	chr9	110999392	111011887	+	111009340	111011887	A5SS&ES	ENSMUST00000217341.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032497.20	Lrrfip2	chr9	protein_coding	leucine rich repeat (in FLII) interacting protein 2
novel_NIR_19791	chr9	110999392	111011887	+	111011500	111011887	5pMXE	ENSMUST00000216430.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032497.20	Lrrfip2	chr9	protein_coding	leucine rich repeat (in FLII) interacting protein 2
novel_NIR_19792	chr9	111019352	111022029	+	111019352	111028733	A3SS	ENSMUST00000035078.13	novel	0.00	0	4	0	4	n	1.00	1	0	1	0	n	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	5	0	5	n	1.00	3	0	3	0	y	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000032497.20	Lrrfip2	chr9	protein_coding	leucine rich repeat (in FLII) interacting protein 2
novel_NIR_19793	chr9	111019352	111022029	+	111019352	111028823	A3SS	ENSMUST00000239333.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000032497.20	Lrrfip2	chr9	protein_coding	leucine rich repeat (in FLII) interacting protein 2
novel_NIR_19794	chr9	111034915	111036037	+	111034915	111036865	A3SS	ENSMUST00000217341.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	13	0	13	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000032497.20	Lrrfip2	chr9	protein_coding	leucine rich repeat (in FLII) interacting protein 2
novel_NIR_19795	chr9	111045046	111045209	+	111045046	111045155	A3SS	ENSMUST00000216430.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032497.20	Lrrfip2	chr9	protein_coding	leucine rich repeat (in FLII) interacting protein 2
novel_NIR_19796	chr9	111065083	111068787	-	111065083	111068791	A5SS	ENSMUST00000135218.8	novel	0.17	6	29	6	29	y	0.00	0	30	0	30	n	0.12	6	46	6	46	n	0.04	1	27	1	27	n	0.04	2	47	2	47	n	0.05	2	38	2	38	n	0.11	4	31	4	31	n	0.00	0	39	0	39	n	0.04	1	24	1	24	n	0.03	1	36	1	36	n	0.09	3	30	3	30	n	0.03	1	34	1	34	n	ENSMUSG00000032498.10	Mlh1	chr9	protein_coding	mutL homolog 1
novel_NIR_19797	chr9	111078189	111078288	-	111076471	111078288	A3SS	ENSMUST00000035079.10	novel	0.00	0	19	0	19	n	0.00	0	35	0	35	n	0.00	0	21	0	21	n	0.00	0	26	0	26	n	0.03	1	29	1	29	n	0.00	0	29	0	29	n	0.00	0	33	0	33	n	0.10	3	26	3	26	n	0.00	0	25	0	25	n	0.00	0	37	0	37	n	0.08	2	24	2	24	n	0.17	5	24	5	24	y	ENSMUSG00000032498.10	Mlh1	chr9	protein_coding	mutL homolog 1
novel_NIR_19798	chr9	112901323	112927270	-	112901323;112915895	112915734;112927270	ES	ENSMUST00000213712.2	novel	0.75	3	1.0	3	2;0	y	0.00	0	1.0	0	1;1	n	0.00	0	3.5	0	7;0	n	0.22	1	3.5	1	7;0	n	0.33	1	2.0	1	4;0	n	0.00	0	2.0	0	2;2	n	0.00	0	2.5	0	1;4	n	0.00	0	1.0	0	2;0	n	0.00	0	2.5	0	2;3	n	0.00	0	8.0	0	16;0	n	0.00	0	6.0	0	8;4	n	0.00	0	3.0	0	5;1	n	ENSMUSG00000110996.2	Gm36251	chr9	lncRNA	predicted gene, 36251
novel_NIR_19799	chr9	112915895	112952050	-	112915895;112933155	112933090;112952050	ES	ENSMUST00000214620.2	novel	0.00	0	1.5	0	0;3	n	0.57	2	1.5	2	0;3	y	0.00	0	0.5	0	0;1	n	0.00	0	1.0	0	0;2	n	0.00	0	2.0	0	0;4	n	0.00	0	0.5	0	0;1	n	0.00	0	1.5	0	0;3	n	0.00	0	1.0	0	0;2	n	-	-	-	-	-	-	0.40	1	1.5	1	0;3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000110996.2	Gm36251	chr9	lncRNA	predicted gene, 36251
novel_NIR_19800	chr9	112926788	112927270	-	112915895	112927270	A3SS	ENSMUST00000213712.2	novel	1.00	1	0	1	0	n	0.83	5	1	5	1	y	1.00	7	0	7	0	y	1.00	2	0	2	0	y	1.00	15	0	15	0	n	0.67	4	2	4	2	y	0.56	5	4	5	4	n	1.00	2	0	2	0	n	0.00	0	3	0	3	n	1.00	20	0	20	0	y	0.64	7	4	7	4	y	0.00	0	1	0	1	n	ENSMUSG00000110996.2	Gm36251	chr9	lncRNA	predicted gene, 36251
novel_NIR_19801	chr9	112927355	112929424	-	112927355	112929802	A5SS	ENSMUST00000213712.2	novel	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.17	2	10	2	10	y	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	ENSMUSG00000110996.2	Gm36251	chr9	lncRNA	predicted gene, 36251
novel_NIR_19802	chr9	112927355	112933090	-	112915895	112933090	A3SS	ENSMUST00000214620.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000110996.2	Gm36251	chr9	lncRNA	predicted gene, 36251
novel_NIR_19803	chr9	112927355	112933090	-	112927355;112929927	112929802;112933090	ES	ENSMUST00000213712.2	novel	0.40	1	1.5	1	3;0	n	0.00	0	6.5	0	7;6	n	0.67	2	1.0	2	1;1	y	0.00	0	4.0	0	5;3	n	0.22	2	7.0	2	6;8	y	0.00	0	1.5	0	3;0	n	0.00	0	6.0	0	5;7	n	0.00	0	8.0	0	10;6	n	0.00	0	2.0	0	4;0	n	0.00	0	8.0	0	13;3	n	0.12	1	7.0	1	9;5	n	0.00	0	6.0	0	10;2	n	ENSMUSG00000110996.2	Gm36251	chr9	lncRNA	predicted gene, 36251
novel_NIR_19804	chr9	112927355	112952050	-	112933155	112952050	A3SS&ES	ENSMUST00000214620.2	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.25	1	3	1	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000110996.2	Gm36251	chr9	lncRNA	predicted gene, 36251
novel_NIR_19805	chr9	112929921	112933090	-	112915895	112933090	A3SS	ENSMUST00000214620.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000110996.2	Gm36251	chr9	lncRNA	predicted gene, 36251
novel_NIR_19806	chr9	112929921	112933090	-	112929927	112933090	A3SS	ENSMUST00000213712.2	novel	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.25	2	6	2	6	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	ENSMUSG00000110996.2	Gm36251	chr9	lncRNA	predicted gene, 36251
novel_NIR_19807	chr9	112929927	112952050	-	112933155	112952050	A3SS&ES	ENSMUST00000214620.2	novel	0.40	2	3	2	3	y	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.60	3	2	3	2	y	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000110996.2	Gm36251	chr9	lncRNA	predicted gene, 36251
novel_NIR_19808	chr9	112933155	112933484	-	112933155	112933780	A5SS	ENSMUST00000213712.2	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.67	2	1	2	1	y	0.00	0	6	0	6	n	ENSMUSG00000110996.2	Gm36251	chr9	lncRNA	predicted gene, 36251
novel_NIR_19809	chr9	112933155;112933909	112933484;112952050	-	112933155	112952050	cassetteExon	ENSMUST00000214620.2	novel	0.25	1.0	3	0;2	3	n	0.00	0.0	3	0;0	3	n	0.33	0.5	1	0;1	1	n	0.00	0.0	2	0;0	2	n	0.27	1.5	4	0;3	4	n	0.00	0.0	1	0;0	1	n	0.33	1.5	3	0;3	3	n	0.43	1.5	2	0;3	2	n	1.00	1.5	0	0;3	0	n	0.14	0.5	3	0;1	3	n	1.00	2.0	0	2;2	0	y	1.00	5.5	0	0;11	0	n	ENSMUSG00000110996.2	Gm36251	chr9	lncRNA	predicted gene, 36251
novel_NIR_19810	chr9	112933909	112952050	-	112933155	112952050	A3SS	ENSMUST00000214620.2	novel	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.43	3	4	3	4	y	0.00	0	1	0	1	n	0.50	3	3	3	3	y	0.60	3	2	3	2	y	1.00	3	0	3	0	y	0.25	1	3	1	3	n	1.00	2	0	2	0	n	1.00	11	0	11	0	y	ENSMUSG00000110996.2	Gm36251	chr9	lncRNA	predicted gene, 36251
novel_NIR_19811	chr9	112933909	112952050	-	112933932	112952050	A3SS	ENSMUST00000213712.2	novel	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.67	2	1	2	1	y	0.85	11	2	11	2	y	ENSMUSG00000110996.2	Gm36251	chr9	lncRNA	predicted gene, 36251
novel_NIR_19812	chr9	113699798	113700227	+	113699798	113704333	A3SS	ENSMUST00000163895.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033392.17	Clasp2	chr9	protein_coding	CLIP associating protein 2
novel_NIR_19813	chr9	113699798	113700227	+	113699798	113705312	A3SS	ENSMUST00000111838.10	novel	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000033392.17	Clasp2	chr9	protein_coding	CLIP associating protein 2
novel_NIR_19814	chr9	113705418	113709010	+	113705418;113707841	113707818;113709010	ES	ENSMUST00000111838.10	novel	1.00	10	0.0	10	0;0	y	-	-	-	-	-	-	1.00	5	0.0	5	0;0	y	-	-	-	-	-	-	1.00	5	0.0	5	0;0	y	1.00	6	0.0	6	0;0	y	1.00	7	0.0	7	0;0	y	1.00	6	0.0	6	0;0	y	1.00	2	0.0	2	0;0	y	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	1.00	5	0.0	5	0;0	y	ENSMUSG00000033392.17	Clasp2	chr9	protein_coding	CLIP associating protein 2
novel_NIR_19815	chr9	113760287	113760645	+	113760287	113760597	A3SS	ENSMUST00000084885.12	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.29	4	10	4	10	y	0.00	0	12	0	12	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.38	3	5	3	5	y	ENSMUSG00000009741.16	Ubp1	chr9	protein_coding	upstream binding protein 1
novel_NIR_19816	chr9	113801961	113804414	+	113801961;113802709	113802633;113804414	ES	ENSMUST00000216293.2	novel	0.00	0	7.5	0	6;9	n	0.00	0	1.5	0	0;3	n	0.00	0	3.0	0	3;3	n	0.00	0	3.5	0	3;4	n	0.00	0	6.5	0	4;9	n	0.00	0	2.5	0	1;4	n	0.00	0	5.0	0	3;7	n	0.00	0	3.5	0	2;5	n	0.21	2	7.5	2	6;9	y	0.33	1	2.0	1	0;4	n	0.00	0	5.0	0	4;6	n	0.59	5	3.5	5	0;7	y	ENSMUSG00000009741.16	Ubp1	chr9	protein_coding	upstream binding protein 1
novel_NIR_19817	chr9	114230625	114233589	+	114230337	114233589	A5SS	ENSMUST00000111820.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	2	1	2	1	y	ENSMUSG00000079260.4	Tmppe	chr9	protein_coding	transmembrane protein with metallophosphoesterase domain
novel_NIR_19818	chr9	114231139	114233589	+	114230337	114233589	A5SS	ENSMUST00000111820.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000079260.4	Tmppe	chr9	protein_coding	transmembrane protein with metallophosphoesterase domain
novel_NIR_19819	chr9	114439790	114442692	-	114439793	114442692	A3SS	ENSMUST00000070117.8	novel	0.29	10	25	10	25	y	0.28	13	33	13	33	y	0.21	11	42	11	42	y	0.26	10	29	10	29	y	0.29	11	27	11	27	y	0.20	3	12	3	12	y	0.24	10	32	10	32	y	0.44	7	9	7	9	y	0.00	0	27	0	27	n	0.19	8	35	8	35	y	0.11	4	34	4	34	n	0.18	8	37	8	37	y	ENSMUSG00000056167.9	Cnot10	chr9	protein_coding	CCR4-NOT transcription complex, subunit 10
novel_NIR_19820	chr9	114461839	114463543	-	114461839	114464348	A5SS	ENSMUST00000238809.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000056167.9	Cnot10	chr9	protein_coding	CCR4-NOT transcription complex, subunit 10
novel_NIR_19821	chr9	114461839	114463543	-	114461839	114468987	A5SS	ENSMUST00000070117.8	novel	0.00	0	18	0	18	n	0.00	0	17	0	17	n	0.00	0	31	0	31	n	0.00	0	22	0	22	n	0.00	0	21	0	21	n	0.00	0	15	0	15	n	0.00	0	38	0	38	n	0.06	1	16	1	16	n	0.00	0	16	0	16	n	0.19	5	21	5	21	y	0.00	0	18	0	18	n	0.00	0	18	0	18	n	ENSMUSG00000056167.9	Cnot10	chr9	protein_coding	CCR4-NOT transcription complex, subunit 10
novel_NIR_19822	chr9	114592460	114672849	-	114592460	114604276	5pMXE	ENSMUST00000217056.2	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032436.18	Cmtm7	chr9	protein_coding	CKLF-like MARVEL transmembrane domain containing 7
novel_NIR_19823	chr9	114592460	114672849	-	114592460	114610736	5pMXE	ENSMUST00000035009.16	novel	0.11	1	8	1	8	n	0.40	2	3	2	3	y	0.12	1	7	1	7	n	0.00	0	3	0	3	n	0.08	1	12	1	12	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	ENSMUSG00000032436.18	Cmtm7	chr9	protein_coding	CKLF-like MARVEL transmembrane domain containing 7
novel_NIR_19824	chr9	115960781	116004360	-	115960781	116004012	A5SS	ENSMUST00000035014.8	novel	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.17	1	5	1	5	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.50	2	2	2	2	y	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	ENSMUSG00000032440.14	Tgfbr2	chr9	protein_coding	transforming growth factor, beta receptor II
novel_NIR_19825	chr9	117711170	117712328	-	117711170	117740948	A5SS	ENSMUST00000111769.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032443.18	Zcwpw2	chr9	protein_coding	zinc finger, CW type with PWWP domain 2
novel_NIR_19826	chr9	117889962	117890782	+	117890585	117890782	A5SS&ES	ENSMUST00000123690.2	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.15	2	11	2	11	y	0.00	0	7	0	7	n	0.18	2	9	2	9	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	ENSMUSG00000039285.13	Azi2	chr9	protein_coding	5-azacytidine induced gene 2
novel_NIR_19827	chr9	117944497	117952215	-	117944497	117979136	A5SS	ENSMUST00000215799.2	novel	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	1	0	1	0	n	0.86	6	1	6	1	y	-	-	-	-	-	-	0.82	9	2	9	2	y	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	8	0	8	0	y	1.00	5	0	5	0	y	ENSMUSG00000039163.11	Cmc1	chr9	protein_coding	COX assembly mitochondrial protein 1
novel_NIR_19828	chr9	117944497	117964932	-	117944497	117979136	A5SS	ENSMUST00000215799.2	novel	1.00	5	0	5	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.60	3	2	3	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	ENSMUSG00000039163.11	Cmc1	chr9	protein_coding	COX assembly mitochondrial protein 1
novel_NIR_19829	chr9	117979807	117997473	+	117979807	117998773	A3SS	ENSMUST00000181824.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000097402.2	Gm17399	chr9	lncRNA	predicted gene, 17399
novel_NIR_19830	chr9	117997632	117998773	+	117979807	117998773	A5SS	ENSMUST00000181824.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000097402.2	Gm17399	chr9	lncRNA	predicted gene, 17399
novel_NIR_19831	chr9	118377869	118380903	+	118377869	118380900	A3SS	ENSMUST00000084820.6	novel	0.18	5	23	5	23	y	0.15	2	11	2	11	y	0.16	11	59	11	59	y	0.23	10	34	10	34	y	0.20	14	56	14	56	y	0.29	12	29	12	29	y	0.29	20	49	20	49	y	0.16	8	43	8	43	y	0.15	4	22	4	22	y	0.05	2	35	2	35	n	0.00	0	13	0	13	n	0.23	10	33	10	33	y	ENSMUSG00000038708.11	Golga4	chr9	protein_coding	golgi autoantigen, golgin subfamily a, 4
novel_NIR_19832	chr9	118394735	118396249	+	118394735	118395976	A3SS&ES	ENSMUST00000212274.2	novel	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000038708.11	Golga4	chr9	protein_coding	golgi autoantigen, golgin subfamily a, 4
novel_NIR_19833	chr9	118482083	118487534	+	118481632	118487534	A5SS	ENSMUST00000044165.14	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.17	2	10	2	10	y	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	ENSMUSG00000039115.14	Itga9	chr9	protein_coding	integrin alpha 9
novel_NIR_19834	chr9	118941312	118941480	+	118941312	118941477	A3SS	ENSMUST00000124213.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000038060.16	Dlec1	chr9	protein_coding	deleted in lung and esophageal cancer 1
novel_NIR_19835	chr9	118959206	118960972	+	118959206	118963537	A3SS	ENSMUST00000165231.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038060.16	Dlec1	chr9	protein_coding	deleted in lung and esophageal cancer 1
novel_NIR_19836	chr9	119059404	119059638	-	119052019	119059638	A3SS	ENSMUST00000173185.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000092212.4	Slc22a13b	chr9	polymorphic_pseudogene	solute carrier family 22 (organic cation transporter), member 13b
novel_NIR_19837	chr9	119173574	119175172	+	119173574	119176796	A3SS	ENSMUST00000176397.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036138.17	Acaa1a	chr9	protein_coding	acetyl-Coenzyme A acyltransferase 1A
novel_NIR_19838	chr9	119176876	119177413	+	119176876	119177422	A3SS	ENSMUST00000176796.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	4	0	4	0	y	1.00	4	0	4	0	y	0.50	1	1	1	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036138.17	Acaa1a	chr9	protein_coding	acetyl-Coenzyme A acyltransferase 1A
novel_NIR_19839	chr9	119176876	119177413	+	119176876	119177652	A3SS	ENSMUST00000176546.2	novel	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	4	2	4	2	y	1.00	4	0	4	0	y	0.20	1	4	1	4	n	0.11	1	8	1	8	n	0.00	0	1	0	1	n	0.60	3	2	3	2	y	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000036138.17	Acaa1a	chr9	protein_coding	acetyl-Coenzyme A acyltransferase 1A
novel_NIR_19840	chr9	119176876	119177638	+	119176876	119177422	A3SS&ES	ENSMUST00000176796.8	novel	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	3	0	3	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000036138.17	Acaa1a	chr9	protein_coding	acetyl-Coenzyme A acyltransferase 1A
novel_NIR_19841	chr9	119176876	119177638	+	119176876	119177652	A3SS	ENSMUST00000176546.2	novel	-	-	-	-	-	-	0.75	6	2	6	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.67	4	2	4	2	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.27	3	8	3	8	y	0.75	3	1	3	1	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	ENSMUSG00000036138.17	Acaa1a	chr9	protein_coding	acetyl-Coenzyme A acyltransferase 1A
novel_NIR_19842	chr9	119176876	119177753	+	119176876	119177422	A3SS&ES	ENSMUST00000176796.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	ENSMUSG00000036138.17	Acaa1a	chr9	protein_coding	acetyl-Coenzyme A acyltransferase 1A
novel_NIR_19843	chr9	119176876	119177753	+	119176876	119177652	A3SS	ENSMUST00000176546.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	6	0	6	0	y	ENSMUSG00000036138.17	Acaa1a	chr9	protein_coding	acetyl-Coenzyme A acyltransferase 1A
novel_NIR_19844	chr9	119176880	119177647	+	119177487	119177647	A5SS&ES	ENSMUST00000176796.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	2	0	2	n	ENSMUSG00000036138.17	Acaa1a	chr9	protein_coding	acetyl-Coenzyme A acyltransferase 1A
novel_NIR_19845	chr9	119178162	119178420	+	119177837	119178420	A5SS	ENSMUST00000176397.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036138.17	Acaa1a	chr9	protein_coding	acetyl-Coenzyme A acyltransferase 1A
novel_NIR_19846	chr9	119190530	119193563	+	119188380	119193563	A5SS	ENSMUST00000215822.2	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.21	3	11	3	11	y	0.12	1	7	1	7	n	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.27	3	8	3	8	y	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	20	0	20	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	ENSMUSG00000035769.10	Xylb	chr9	protein_coding	xylulokinase homolog (H. influenzae)
novel_NIR_19847	chr9	119191604	119193563	+	119188380	119193563	A5SS	ENSMUST00000215822.2	novel	0.86	18	3	18	3	y	0.78	7	2	7	2	y	0.69	24	11	24	11	y	0.72	18	7	18	7	y	0.56	14	11	14	11	y	0.70	16	7	16	7	y	0.62	13	8	13	8	y	0.70	14	6	14	6	y	0.50	12	12	12	12	y	0.39	13	20	13	20	y	0.65	11	6	11	6	y	0.62	18	11	18	11	y	ENSMUSG00000035769.10	Xylb	chr9	protein_coding	xylulokinase homolog (H. influenzae)
novel_NIR_19848	chr9	119191604	119193563	+	119190249	119193563	A5SS	ENSMUST00000039610.10	novel	0.16	18	92	18	92	y	0.09	7	69	7	69	n	0.26	24	70	24	70	y	0.13	18	120	18	120	n	0.09	14	134	14	134	n	0.25	16	47	16	47	y	0.09	13	131	13	131	n	0.18	14	65	14	65	y	0.12	12	84	12	84	n	0.08	13	152	13	152	n	0.10	11	103	11	103	n	0.12	18	134	18	134	n	ENSMUSG00000035769.10	Xylb	chr9	protein_coding	xylulokinase homolog (H. influenzae)
novel_NIR_19849	chr9	119193052	119193563	+	119188380	119193563	A5SS	ENSMUST00000215822.2	novel	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.08	1	11	1	11	n	0.36	4	7	4	7	y	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.11	1	8	1	8	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.09	2	20	2	20	n	0.00	0	6	0	6	n	0.08	1	11	1	11	n	ENSMUSG00000035769.10	Xylb	chr9	protein_coding	xylulokinase homolog (H. influenzae)
novel_NIR_19850	chr9	119198751	119199341	+	119198751	119199345	A3SS	ENSMUST00000216838.2	novel	0.16	3	16	3	16	y	0.00	0	18	0	18	n	0.00	0	15	0	15	n	0.12	3	22	3	22	n	0.00	0	20	0	20	n	0.00	0	10	0	10	n	0.19	3	13	3	13	y	0.00	0	15	0	15	n	0.19	3	13	3	13	y	0.00	0	33	0	33	n	0.31	4	9	4	9	y	0.07	1	14	1	14	n	ENSMUSG00000035769.10	Xylb	chr9	protein_coding	xylulokinase homolog (H. influenzae)
novel_NIR_19851	chr9	119199444	119200982	+	119199444;119200475	119200458;119200982	ES	ENSMUST00000216838.2	novel	1.00	8	0.0	8	0;0	y	1.00	8	0.0	8	0;0	y	1.00	14	0.0	14	0;0	y	1.00	10	0.0	10	0;0	y	1.00	19	0.0	19	0;0	y	1.00	2	0.0	2	0;0	y	1.00	13	0.0	13	0;0	y	1.00	4	0.0	4	0;0	y	1.00	8	0.0	8	0;0	y	1.00	8	0.0	8	0;0	y	1.00	11	0.0	11	0;0	y	1.00	11	0.0	11	0;0	y	ENSMUSG00000035769.10	Xylb	chr9	protein_coding	xylulokinase homolog (H. influenzae)
novel_NIR_19852	chr9	119257634	119258940	+	119257634	119258931	A3SS	ENSMUST00000165044.3	novel	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.23	3	10	3	10	y	0.00	0	12	0	12	n	0.00	0	16	0	16	n	ENSMUSG00000061393.15	Acvr2b	chr9	protein_coding	activin receptor IIB
novel_NIR_19853	chr9	119274387	119274754	+	119274216	119274754	A5SS	ENSMUST00000214462.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000042787.16	Exog	chr9	protein_coding	endo/exonuclease (5'-3'), endonuclease G-like
novel_NIR_19854	chr9	119274387	119274754	+	119274387	119276015	A3SS	ENSMUST00000164213.5	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000042787.16	Exog	chr9	protein_coding	endo/exonuclease (5'-3'), endonuclease G-like
novel_NIR_19855	chr9	119745859	119746177	+	119745857	119746177	A5SS	ENSMUST00000215307.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	ENSMUSG00000032512.8	Wdr48	chr9	protein_coding	WD repeat domain 48
novel_NIR_19856	chr9	119762408	119762900	-	119762408	119766524	A5SS	ENSMUST00000035099.9	novel	0.03	1	35	1	35	n	0.06	2	32	2	32	n	0.00	0	45	0	45	n	0.00	0	47	0	47	n	0.00	0	55	0	55	n	0.00	0	31	0	31	n	0.00	0	39	0	39	n	0.15	4	23	4	23	y	0.00	0	40	0	40	n	0.05	2	37	2	37	n	0.00	0	33	0	33	n	0.00	0	27	0	27	n	ENSMUSG00000032513.9	Gorasp1	chr9	protein_coding	golgi reassembly stacking protein 1
novel_NIR_19857	chr9	119808407	119813472	-	119806311	119813472	A3SS	ENSMUST00000035101.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032515.9	Csrnp1	chr9	protein_coding	cysteine-serine-rich nuclear protein 1
novel_NIR_19858	chr9	119813535	119813700	-	119806311	119813700	A3SS	ENSMUST00000213936.2	novel	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032515.9	Csrnp1	chr9	protein_coding	cysteine-serine-rich nuclear protein 1
novel_NIR_19859	chr9	119942335	119945568	+	119944242	119945568	5pMXE	ENSMUST00000135514.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	5	0	5	0	y	ENSMUSG00000032519.12	Slc25a38	chr9	protein_coding	solute carrier family 25, member 38
novel_NIR_19860	chr9	119946603	119948931	+	119946603	119948949	A3SS	ENSMUST00000150093.8	novel	0.11	1	8	1	8	n	0.22	2	7	2	7	y	0.16	3	16	3	16	y	0.00	0	8	0	8	n	0.15	5	28	5	28	y	0.07	1	13	1	13	n	0.06	1	17	1	17	n	0.00	0	11	0	11	n	0.09	2	21	2	21	n	0.00	0	17	0	17	n	0.00	0	8	0	8	n	0.26	5	14	5	14	y	ENSMUSG00000032519.12	Slc25a38	chr9	protein_coding	solute carrier family 25, member 38
novel_NIR_19861	chr9	119946603	119948931	+	119946603	119949323	A3SS	ENSMUST00000035106.12	novel	0.02	1	50	1	50	n	0.05	2	39	2	39	n	0.20	3	12	3	12	y	0.00	0	48	0	48	n	0.09	5	50	5	50	n	0.10	1	9	1	9	n	0.03	1	35	1	35	n	0.00	0	26	0	26	n	0.06	2	31	2	31	n	0.00	0	47	0	47	n	0.00	0	41	0	41	n	0.09	5	50	5	50	n	ENSMUSG00000032519.12	Slc25a38	chr9	protein_coding	solute carrier family 25, member 38
novel_NIR_19862	chr9	119948541	119948949	+	119946603	119948949	A5SS	ENSMUST00000150093.8	novel	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.06	1	16	1	16	n	0.00	0	8	0	8	n	0.00	0	28	0	28	n	0.00	0	13	0	13	n	0.11	2	17	2	17	n	0.00	0	11	0	11	n	0.00	0	21	0	21	n	0.00	0	17	0	17	n	0.11	1	8	1	8	n	0.18	3	14	3	14	y	ENSMUSG00000032519.12	Slc25a38	chr9	protein_coding	solute carrier family 25, member 38
novel_NIR_19863	chr9	121169814	121193067	+	121126899	121193067	A5SS	ENSMUST00000211301.2	novel	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	23	0	23	n	0.00	0	16	0	16	n	0.06	1	16	1	16	n	0.00	0	6	0	6	n	0.00	0	17	0	17	n	0.17	2	10	2	10	y	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.00	0	13	0	13	n	0.00	0	21	0	21	n	ENSMUSG00000032536.13	Trak1	chr9	protein_coding	trafficking protein, kinesin binding 1
novel_NIR_19864	chr9	121169814	121193067	+	121127138	121193067	A5SS	ENSMUST00000209390.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032536.13	Trak1	chr9	protein_coding	trafficking protein, kinesin binding 1
novel_NIR_19865	chr9	121169814	121193067	+	121143425	121193067	A5SS	ENSMUST00000211149.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032536.13	Trak1	chr9	protein_coding	trafficking protein, kinesin binding 1
novel_NIR_19866	chr9	121184471	121193067	+	121126899	121193067	A5SS	ENSMUST00000211301.2	novel	0.20	3	12	3	12	y	0.00	0	5	0	5	n	0.00	0	23	0	23	n	0.00	0	16	0	16	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.00	0	13	0	13	n	0.00	0	21	0	21	n	ENSMUSG00000032536.13	Trak1	chr9	protein_coding	trafficking protein, kinesin binding 1
novel_NIR_19867	chr9	121184471	121193067	+	121127138	121193067	A5SS	ENSMUST00000209390.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032536.13	Trak1	chr9	protein_coding	trafficking protein, kinesin binding 1
novel_NIR_19868	chr9	121184471	121193067	+	121143425	121193067	A5SS	ENSMUST00000211149.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032536.13	Trak1	chr9	protein_coding	trafficking protein, kinesin binding 1
novel_NIR_19869	chr9	121209767	121220923	+	121196257	121220923	A5SS	ENSMUST00000210636.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032536.13	Trak1	chr9	protein_coding	trafficking protein, kinesin binding 1
novel_NIR_19870	chr9	121209767	121220923	+	121196300	121220923	A5SS	ENSMUST00000209211.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032536.13	Trak1	chr9	protein_coding	trafficking protein, kinesin binding 1
novel_NIR_19871	chr9	121209767	121220923	+	121211998	121220923	5pMXE	ENSMUST00000209995.2	novel	0.00	0	18	0	18	n	0.00	0	9	0	9	n	0.17	4	20	4	20	y	0.00	0	15	0	15	n	0.00	0	28	0	28	n	0.00	0	13	0	13	n	0.00	0	20	0	20	n	0.00	0	21	0	21	n	0.00	0	5	0	5	n	0.00	0	17	0	17	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	ENSMUSG00000032536.13	Trak1	chr9	protein_coding	trafficking protein, kinesin binding 1
novel_NIR_19872	chr9	121209811	121220923	+	121193365	121220923	A5SS	ENSMUST00000211301.2	novel	0.00	0	21	0	21	n	0.00	0	9	0	9	n	0.04	1	24	1	24	n	0.00	0	21	0	21	n	0.00	0	29	0	29	n	0.00	0	16	0	16	n	0.00	0	22	0	22	n	0.00	0	13	0	13	n	0.00	0	24	0	24	n	0.00	0	29	0	29	n	0.20	4	16	4	16	y	0.04	1	25	1	25	n	ENSMUSG00000032536.13	Trak1	chr9	protein_coding	trafficking protein, kinesin binding 1
novel_NIR_19873	chr9	121209811	121220923	+	121196257	121220923	A5SS	ENSMUST00000210636.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	4	0	4	0	y	1.00	1	0	1	0	n	ENSMUSG00000032536.13	Trak1	chr9	protein_coding	trafficking protein, kinesin binding 1
novel_NIR_19874	chr9	121209811	121220923	+	121196300	121220923	A5SS	ENSMUST00000209211.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	ENSMUSG00000032536.13	Trak1	chr9	protein_coding	trafficking protein, kinesin binding 1
novel_NIR_19875	chr9	121209811	121220923	+	121211998	121220923	5pMXE	ENSMUST00000209995.2	novel	0.00	0	18	0	18	n	0.00	0	9	0	9	n	0.05	1	20	1	20	n	0.00	0	15	0	15	n	0.00	0	28	0	28	n	0.00	0	13	0	13	n	0.00	0	20	0	20	n	0.00	0	21	0	21	n	0.00	0	5	0	5	n	0.00	0	17	0	17	n	0.33	4	8	4	8	y	0.14	1	6	1	6	n	ENSMUSG00000032536.13	Trak1	chr9	protein_coding	trafficking protein, kinesin binding 1
novel_NIR_19876	chr9	121209947	121220923	+	121193365	121220923	A5SS	ENSMUST00000211301.2	novel	0.12	3	21	3	21	n	0.53	10	9	10	9	y	0.23	7	24	7	24	y	0.40	14	21	14	21	y	0.24	9	29	9	29	y	0.33	8	16	8	16	y	0.21	6	22	6	22	y	0.61	20	13	20	13	y	0.25	8	24	8	24	y	0.26	10	29	10	29	y	0.36	9	16	9	16	y	0.29	10	25	10	25	y	ENSMUSG00000032536.13	Trak1	chr9	protein_coding	trafficking protein, kinesin binding 1
novel_NIR_19877	chr9	121209947	121220923	+	121196257	121220923	A5SS	ENSMUST00000210636.2	novel	1.00	3	0	3	0	y	1.00	10	0	10	0	y	1.00	7	0	7	0	y	1.00	14	0	14	0	y	1.00	9	0	9	0	y	1.00	8	0	8	0	y	1.00	6	0	6	0	y	1.00	20	0	20	0	y	1.00	8	0	8	0	y	0.91	10	1	10	1	y	1.00	9	0	9	0	y	1.00	10	0	10	0	y	ENSMUSG00000032536.13	Trak1	chr9	protein_coding	trafficking protein, kinesin binding 1
novel_NIR_19878	chr9	121209947	121220923	+	121196300	121220923	A5SS	ENSMUST00000209211.2	novel	1.00	3	0	3	0	y	1.00	10	0	10	0	y	1.00	7	0	7	0	y	1.00	14	0	14	0	y	1.00	9	0	9	0	y	1.00	8	0	8	0	y	1.00	6	0	6	0	y	1.00	20	0	20	0	y	1.00	8	0	8	0	y	1.00	10	0	10	0	y	1.00	9	0	9	0	y	1.00	10	0	10	0	y	ENSMUSG00000032536.13	Trak1	chr9	protein_coding	trafficking protein, kinesin binding 1
novel_NIR_19879	chr9	121209947	121220923	+	121211998	121220923	5pMXE	ENSMUST00000209995.2	novel	0.14	3	18	3	18	n	0.53	10	9	10	9	y	0.26	7	20	7	20	y	0.48	14	15	14	15	y	0.24	9	28	9	28	y	0.38	8	13	8	13	y	0.23	6	20	6	20	y	0.49	20	21	20	21	y	0.62	8	5	8	5	y	0.37	10	17	10	17	y	0.53	9	8	9	8	y	0.62	10	6	10	6	y	ENSMUSG00000032536.13	Trak1	chr9	protein_coding	trafficking protein, kinesin binding 1
novel_NIR_19880	chr9	121289580	121295973	+	121289643	121295973	A5SS	ENSMUST00000211301.2	novel	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.05	1	20	1	20	n	0.20	4	16	4	16	y	0.11	2	16	2	16	n	0.20	2	8	2	8	y	0.26	5	14	5	14	y	0.20	3	12	3	12	y	0.00	0	6	0	6	n	0.12	3	23	3	23	n	0.08	1	11	1	11	n	0.00	0	5	0	5	n	ENSMUSG00000032536.13	Trak1	chr9	protein_coding	trafficking protein, kinesin binding 1
novel_NIR_19881	chr9	121289643	121295977	+	121289643	121295973	A3SS	ENSMUST00000211301.2	novel	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	20	0	20	n	0.16	3	16	3	16	y	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.07	1	14	1	14	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	23	0	23	n	0.00	0	11	0	11	n	0.58	7	5	7	5	y	ENSMUSG00000032536.13	Trak1	chr9	protein_coding	trafficking protein, kinesin binding 1
novel_NIR_19882	chr9	121289643	121295977	+	121289643	121298051	A3SS	ENSMUST00000238988.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.33	3	6	3	6	y	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.12	1	7	1	7	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	1.00	7	0	7	0	y	ENSMUSG00000032536.13	Trak1	chr9	protein_coding	trafficking protein, kinesin binding 1
novel_NIR_19883	chr9	121295738	121298051	+	121289643	121298051	A5SS	ENSMUST00000238988.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.22	2	7	2	7	y	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	-	-	-	-	-	-	ENSMUSG00000032536.13	Trak1	chr9	protein_coding	trafficking protein, kinesin binding 1
novel_NIR_19884	chr9	121297943	121298051	+	121289643	121298051	A5SS	ENSMUST00000238988.2	novel	0.83	10	2	10	2	y	1.00	6	0	6	0	y	0.56	9	7	9	7	n	0.74	17	6	17	6	y	0.45	9	11	9	11	y	0.67	10	5	10	5	y	0.00	0	7	0	7	n	0.62	5	3	5	3	y	0.68	15	7	15	7	y	0.64	18	10	18	10	y	0.74	20	7	20	7	y	1.00	13	0	13	0	y	ENSMUSG00000032536.13	Trak1	chr9	protein_coding	trafficking protein, kinesin binding 1
novel_NIR_19885	chr9	121297943	121298051	+	121296043	121298051	A5SS	ENSMUST00000211301.2	novel	0.45	10	12	10	12	y	0.32	6	13	6	13	y	0.36	9	16	9	16	n	0.49	17	18	17	18	y	0.21	9	33	9	33	y	0.43	10	13	10	13	y	0.00	0	28	0	28	n	0.18	5	23	5	23	y	0.50	15	15	15	15	y	0.31	18	41	18	41	y	0.51	20	19	20	19	y	0.45	13	16	13	16	y	ENSMUSG00000032536.13	Trak1	chr9	protein_coding	trafficking protein, kinesin binding 1
novel_NIR_19886	chr9	121493711	121494214	+	121493743	121494214	A5SS	ENSMUST00000035115.5	novel	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	18	0	18	n	0.10	1	9	1	9	n	0.00	0	13	0	13	n	0.09	1	10	1	10	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.25	2	6	2	6	y	0.00	0	10	0	10	n	ENSMUSG00000032528.6	Vipr1	chr9	protein_coding	vasoactive intestinal peptide receptor 1
novel_NIR_19887	chr9	121524808	121533330	-	121524808	121529619	A5SS&ES	ENSMUST00000078547.12	novel	0.00	0	4	0	4	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.14	1	6	1	6	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000061536.14	Sec22c	chr9	protein_coding	SEC22 homolog C, vesicle trafficking protein
novel_NIR_19888	chr9	121524808	121533330	-	121524808	121533990	A5SS	ENSMUST00000111560.10	novel	0.00	0	8	0	8	n	0.12	1	7	1	7	n	0.00	0	5	0	5	n	0.12	1	7	1	7	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.14	1	6	1	6	n	0.40	2	3	2	3	y	0.00	0	5	0	5	n	0.43	3	4	3	4	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000061536.14	Sec22c	chr9	protein_coding	SEC22 homolog C, vesicle trafficking protein
novel_NIR_19889	chr9	121524808	121533330	-	121524808	121534280	A5SS	ENSMUST00000154978.3	novel	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.38	3	5	3	5	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000061536.14	Sec22c	chr9	protein_coding	SEC22 homolog C, vesicle trafficking protein
novel_NIR_19890	chr9	121539781	121541878	+	121539781	121541669	A3SS	ENSMUST00000215833.2	novel	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.29	2	5	2	5	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.50	3	3	3	3	y	0.50	2	2	2	2	y	ENSMUSG00000032526.12	Ss18l2	chr9	protein_coding	SS18, nBAF chromatin remodeling complex subunit like 2
novel_NIR_19891	chr9	121581529	121582054	+	121581529	121581863	A3SS&ES	ENSMUST00000182503.8	novel	0.96	22	1	22	1	y	1.00	13	0	13	0	y	1.00	32	0	32	0	y	1.00	6	0	6	0	y	1.00	24	0	24	0	y	0.96	24	1	24	1	y	1.00	26	0	26	0	y	0.93	25	2	25	2	y	1.00	22	0	22	0	y	1.00	12	0	12	0	y	0.95	19	1	19	1	y	0.88	23	3	23	3	y	ENSMUSG00000032525.16	Nktr	chr9	protein_coding	natural killer tumor recognition sequence
novel_NIR_19892	chr9	121581529	121582054	+	121581529	121582057	A3SS	ENSMUST00000035112.13	novel	0.55	22	18	22	18	y	0.46	13	15	13	15	y	0.44	32	40	32	40	y	0.24	6	19	6	19	y	0.46	24	28	24	28	y	0.59	24	17	24	17	y	0.51	26	25	26	25	y	0.56	25	20	25	20	y	0.56	22	17	22	17	y	0.38	12	20	12	20	y	0.42	19	26	19	26	y	0.57	23	17	23	17	y	ENSMUSG00000032525.16	Nktr	chr9	protein_coding	natural killer tumor recognition sequence
novel_NIR_19893	chr9	121681671	121685504	-	121681671	121685516	A5SS	ENSMUST00000213124.2	novel	0.00	0	3	0	3	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038412.9	Higd1a	chr9	protein_coding	HIG1 domain family, member 1A
novel_NIR_19894	chr9	121681671	121685504	-	121681675	121685504	A3SS	ENSMUST00000215300.2	novel	0.00	0	6	0	6	n	0.20	1	4	1	4	n	0.00	0	6	0	6	n	0.33	2	4	2	4	y	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000038412.9	Higd1a	chr9	protein_coding	HIG1 domain family, member 1A
novel_NIR_19895	chr9	121681671	121685787	-	121681671;121685651	121685516;121685787	ES	ENSMUST00000213124.2	novel	0.00	0	1.5	0	3;0	n	-	-	-	-	-	-	0.50	1	1.0	1	0;2	n	0.00	0	0.5	0	0;1	n	0.00	0	0.5	0	0;1	n	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1.0	0	2;0	n	0.00	0	2.5	0	5;0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038412.9	Higd1a	chr9	protein_coding	HIG1 domain family, member 1A
novel_NIR_19896	chr9	121681671	121685787	-	121681675	121685787	A3SS	ENSMUST00000216914.2	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.09	1	10	1	10	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	ENSMUSG00000038412.9	Higd1a	chr9	protein_coding	HIG1 domain family, member 1A
novel_NIR_19897	chr9	121681671	121685787	-	121685651	121685787	A3SS&ES	ENSMUST00000213147.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038412.9	Higd1a	chr9	protein_coding	HIG1 domain family, member 1A
novel_NIR_19898	chr9	121681671	121686578	-	121685651	121686578	A3SS&ES	ENSMUST00000215300.2	novel	0.85	51	9	51	9	y	0.89	40	5	40	5	y	0.90	28	3	28	3	y	0.70	28	12	28	12	y	0.97	37	1	37	1	y	0.83	10	2	10	2	y	0.85	50	9	50	9	y	0.85	17	3	17	3	y	0.89	34	4	34	4	y	0.83	45	9	45	9	y	0.92	46	4	46	4	y	0.88	46	6	46	6	y	ENSMUSG00000038412.9	Higd1a	chr9	protein_coding	HIG1 domain family, member 1A
novel_NIR_19899	chr9	121681671	121686578	-	121685938	121686578	A3SS&ES	ENSMUST00000213147.2	novel	0.86	51	8	51	8	y	0.95	40	2	40	2	y	0.74	28	10	28	10	y	0.80	28	7	28	7	y	0.86	37	6	37	6	y	0.83	10	2	10	2	y	0.81	50	12	50	12	y	0.94	17	1	17	1	y	1.00	34	0	34	0	y	0.94	45	3	45	3	y	0.92	46	4	46	4	y	0.98	46	1	46	1	y	ENSMUSG00000038412.9	Higd1a	chr9	protein_coding	HIG1 domain family, member 1A
novel_NIR_19900	chr9	121780346	121793803	+	121769876	121793803	A5SS	ENSMUST00000214808.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000111053.2	Gm49343	chr9	lncRNA	predicted gene, 49343
novel_NIR_19901	chr9	121780346	121793803	+	121780213	121793803	A5SS	ENSMUST00000043011.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038233.11	Gask1a	chr9	protein_coding	golgi associated kinase 1A
novel_NIR_19902	chr9	121780346	121793803	+	121780314	121793803	A5SS	ENSMUST00000214536.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000038233.11	Gask1a	chr9	protein_coding	golgi associated kinase 1A
novel_NIR_19903	chr9	121780346	121793803	+	121781946	121793803	5pMXE	ENSMUST00000213773.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	3	3	3	3	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000038233.11	Gask1a	chr9	protein_coding	golgi associated kinase 1A
novel_NIR_19904	chr9	121813222	121823911	-	121812889	121823911	A3SS	ENSMUST00000216669.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.75	3	1	3	1	y	ENSMUSG00000066235.8	Pomgnt2	chr9	protein_coding	protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2
novel_NIR_19905	chr9	121813222	121823911	-	121813222	121824942	A5SS	ENSMUST00000217610.2	novel	0.33	1	2	1	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.75	3	1	3	1	y	0.60	3	2	3	2	y	ENSMUSG00000066235.8	Pomgnt2	chr9	protein_coding	protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2
novel_NIR_19906	chr9	121946568	121960959	+	121946473	121960959	A5SS	ENSMUST00000119215.9	novel	0.07	1	14	1	14	n	0.14	2	12	2	12	n	0.09	3	30	3	30	n	0.00	0	25	0	25	n	0.09	2	20	2	20	n	0.00	0	11	0	11	n	0.00	0	30	0	30	n	0.32	6	13	6	13	y	0.09	1	10	1	10	n	0.12	3	22	3	22	n	0.26	6	17	6	17	y	0.00	0	41	0	41	n	ENSMUSG00000038145.18	Snrk	chr9	protein_coding	SNF related kinase
novel_NIR_19907	chr9	121946568	121960959	+	121946568	121965972	A3SS	ENSMUST00000139181.2	novel	0.33	1	2	1	2	n	0.67	2	1	2	1	y	1.00	3	0	3	0	y	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	ENSMUSG00000038145.18	Snrk	chr9	protein_coding	SNF related kinase
novel_NIR_19908	chr9	121946568	121960959	+	121947119	121960959	5pMXE	ENSMUST00000142784.2	novel	0.50	1	1	1	1	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	0.25	2	6	2	6	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.86	6	1	6	1	y	-	-	-	-	-	-	ENSMUSG00000038145.18	Snrk	chr9	protein_coding	SNF related kinase
novel_NIR_19909	chr9	121952212	121960959	+	121947119	121960959	A5SS	ENSMUST00000142784.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000038145.18	Snrk	chr9	protein_coding	SNF related kinase
novel_NIR_19910	chr9	122005544	122010296	-	122005544	122016592	A5SS	ENSMUST00000216738.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037949.9	Ano10	chr9	protein_coding	anoctamin 10
novel_NIR_19911	chr9	122005544	122011887	-	122005544	122016592	A5SS	ENSMUST00000216738.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000037949.9	Ano10	chr9	protein_coding	anoctamin 10
novel_NIR_19912	chr9	122005544	122018974	-	122005544	122016592	5pMXE	ENSMUST00000216738.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000037949.9	Ano10	chr9	protein_coding	anoctamin 10
novel_NIR_19913	chr9	122181509	122194201	+	122192929	122194201	A5SS&ES	ENSMUST00000035128.11	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	8	0	8	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	0.33	1	2	1	2	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000032540.17	Abhd5	chr9	protein_coding	abhydrolase domain containing 5
novel_NIR_19914	chr9	122200837	122204971	+	122180904	122204971	A5SS	ENSMUST00000111497.5	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000032540.17	Abhd5	chr9	protein_coding	abhydrolase domain containing 5
novel_NIR_19915	chr9	122634851	122637832	+	122634753	122637832	A5SS	ENSMUST00000052740.14	novel	0.21	7	27	7	27	y	0.20	2	8	2	8	y	0.10	2	19	2	19	n	0.20	9	35	9	35	y	0.05	2	36	2	36	n	0.00	0	20	0	20	n	0.13	3	20	3	20	n	0.23	6	20	6	20	y	0.21	3	11	3	11	y	0.10	3	26	3	26	n	0.05	1	19	1	19	n	0.10	2	19	2	19	n	ENSMUSG00000046603.17	Tcaim	chr9	protein_coding	T cell activation inhibitor, mitochondrial
novel_NIR_19916	chr9	122644805	122647915	+	122643653	122647915	A5SS	ENSMUST00000136274.3	novel	0.33	2	4	2	4	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.12	2	14	2	14	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.09	1	10	1	10	n	0.40	4	6	4	6	y	0.00	0	6	0	6	n	ENSMUSG00000046603.17	Tcaim	chr9	protein_coding	T cell activation inhibitor, mitochondrial
novel_NIR_19917	chr9	122691324	122694802	-	122691324	122694979	A5SS	ENSMUST00000216063.2	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.07	1	13	1	13	n	0.22	2	7	2	7	y	0.00	0	1	0	1	n	0.00	0	14	0	14	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.20	1	4	1	4	n	ENSMUSG00000047036.9	Zfp445	chr9	protein_coding	zinc finger protein 445
novel_NIR_19918	chr9	122691324	122694987	-	122691324	122694979	A5SS	ENSMUST00000216063.2	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.22	2	7	2	7	y	0.00	0	1	0	1	n	0.00	0	14	0	14	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000047036.9	Zfp445	chr9	protein_coding	zinc finger protein 445
novel_NIR_19919	chr9	122691324	122715832	-	122691324	122694979	5pMXE	ENSMUST00000216063.2	novel	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.11	1	8	1	8	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	14	0	14	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000047036.9	Zfp445	chr9	protein_coding	zinc finger protein 445
novel_NIR_19920	chr9	122691324	122715832	-	122714786	122715832	3pMXE	ENSMUST00000214426.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000097322.9	A530083I20Rik	chr9	lncRNA	RIKEN cDNA A530083I20 gene
novel_NIR_19921	chr9	122691409	122694987	-	122691409	122694802	A5SS	ENSMUST00000214558.2	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	17	0	17	n	0.08	1	12	1	12	n	0.12	2	15	2	15	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.11	1	8	1	8	n	0.00	0	5	0	5	n	0.07	1	14	1	14	n	-	-	-	-	-	-	0.67	4	2	4	2	y	ENSMUSG00000047036.9	Zfp445	chr9	protein_coding	zinc finger protein 445
novel_NIR_19922	chr9	122691409	122715832	-	122691409	122694802	5pMXE	ENSMUST00000214558.2	novel	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.15	3	17	3	17	y	0.00	0	12	0	12	n	0.06	1	15	1	15	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.27	3	8	3	8	y	0.00	0	5	0	5	n	0.00	0	14	0	14	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000047036.9	Zfp445	chr9	protein_coding	zinc finger protein 445
novel_NIR_19923	chr9	122691409	122715832	-	122714786	122715832	3pMXE	ENSMUST00000214426.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000097322.9	A530083I20Rik	chr9	lncRNA	RIKEN cDNA A530083I20 gene
novel_NIR_19924	chr9	122718000	122719724	+	122718014	122719724	A5SS	ENSMUST00000215872.2	novel	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	13	0	13	n	0.05	1	20	1	20	n	0.00	0	23	0	23	n	0.00	0	16	0	16	n	0.00	0	23	0	23	n	0.00	0	23	0	23	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.18	3	14	3	14	y	ENSMUSG00000063488.7	Zkscan7	chr9	protein_coding	zinc finger with KRAB and SCAN domains 7
novel_NIR_19925	chr9	122721456	122721760	+	122721456	122721750	A3SS	ENSMUST00000063980.8	novel	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.33	2	4	2	4	y	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000063488.7	Zkscan7	chr9	protein_coding	zinc finger with KRAB and SCAN domains 7
novel_NIR_19926	chr9	122721456	122723757	+	122721456;122721843	122721750;122723757	ES	ENSMUST00000063980.8	novel	0.60	3	2.0	3	2;2	y	0.58	9	6.5	9	9;4	y	0.40	5	7.5	5	10;5	y	0.58	9	6.5	9	5;8	y	0.50	4	4.0	4	4;4	y	0.73	8	3.0	8	4;2	y	0.22	2	7.0	2	11;3	y	0.43	9	12.0	9	11;13	y	0.94	8	0.5	8	1;0	y	0.56	5	4.0	5	5;3	y	0.57	2	1.5	2	3;0	y	0.54	7	6.0	7	5;7	y	ENSMUSG00000063488.7	Zkscan7	chr9	protein_coding	zinc finger with KRAB and SCAN domains 7
novel_NIR_19927	chr9	122721812	122723757	+	122721843	122723757	A5SS	ENSMUST00000063980.8	novel	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.00	0	8	0	8	n	0.33	2	4	2	4	y	0.67	4	2	4	2	y	0.00	0	3	0	3	n	0.00	0	13	0	13	n	1.00	1	0	1	0	n	0.50	3	3	3	3	y	1.00	1	0	1	0	n	0.00	0	7	0	7	n	ENSMUSG00000063488.7	Zkscan7	chr9	protein_coding	zinc finger with KRAB and SCAN domains 7
novel_NIR_19928	chr9	122949364	122956871	+	122955790	122956871	5pMXE	ENSMUST00000161569.2	novel	1.00	2	0	2	0	y	0.50	1	1	1	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	1.00	11	0	11	0	y	-	-	-	-	-	-	1.00	11	0	11	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000025785.6	Exosc7	chr9	protein_coding	exosome component 7
novel_NIR_19929	chr9	123206894	123218025	+	123206894	123221848	A3SS	ENSMUST00000038863.9	novel	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.00	0	15	0	15	n	0.10	1	9	1	9	n	0.00	0	8	0	8	n	0.00	0	15	0	15	n	0.22	2	7	2	7	y	0.00	0	11	0	11	n	0.14	2	12	2	12	n	0.12	2	14	2	14	n	0.05	1	21	1	21	n	ENSMUSG00000035202.9	Lars2	chr9	protein_coding	leucyl-tRNA synthetase, mitochondrial
novel_NIR_19930	chr9	123242282	123247244	+	123241081	123247244	A5SS	ENSMUST00000038863.9	novel	0.00	0	17	0	17	n	0.30	3	7	3	7	y	0.00	0	9	0	9	n	0.04	1	23	1	23	n	0.00	0	22	0	22	n	0.00	0	8	0	8	n	0.00	0	29	0	29	n	0.00	0	4	0	4	n	0.18	2	9	2	9	n	0.00	0	21	0	21	n	0.07	1	13	1	13	n	0.00	0	14	0	14	n	ENSMUSG00000035202.9	Lars2	chr9	protein_coding	leucyl-tRNA synthetase, mitochondrial
novel_NIR_19931	chr9	123619567	123619953	-	123601963	123619953	A3SS	ENSMUST00000214413.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000091661.3	Gm17021	chr9	lncRNA	predicted gene 17021
novel_NIR_19932	chr9	123672673	123680363	-	123672673	123673568	5pMXE	ENSMUST00000216136.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.09	1	10	1	10	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025241.17	Fyco1	chr9	protein_coding	FYVE and coiled-coil domain containing 1
novel_NIR_19933	chr9	123672673	123680363	-	123672673	123674218	A5SS&ES	ENSMUST00000084715.14	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025241.17	Fyco1	chr9	protein_coding	FYVE and coiled-coil domain containing 1
novel_NIR_19934	chr9	123672673	123680363	-	123672673	123680846	A5SS	ENSMUST00000167595.9	novel	0.20	3	12	3	12	y	0.00	0	5	0	5	n	0.00	0	15	0	15	n	0.00	0	20	0	20	n	0.00	0	40	0	40	n	0.00	0	10	0	10	n	0.03	1	30	1	30	n	0.12	3	21	3	21	n	0.00	0	14	0	14	n	0.03	1	29	1	29	n	0.00	0	19	0	19	n	0.00	0	23	0	23	n	ENSMUSG00000025241.17	Fyco1	chr9	protein_coding	FYVE and coiled-coil domain containing 1
novel_NIR_19935	chr9	124032566	124033756	-	124033195	124033756	3pMXE	ENSMUST00000214845.2	novel	0.81	22	5	22	5	y	0.50	16	16	16	16	y	0.87	41	6	41	6	y	0.76	22	7	22	7	y	0.88	59	8	59	8	y	0.93	28	2	28	2	y	0.80	45	11	45	11	y	0.88	35	5	35	5	y	0.88	14	2	14	2	y	0.86	38	6	38	6	y	0.64	14	8	14	8	y	0.79	31	8	31	8	y	ENSMUSG00000110834.2	Gm39469	chr9	lncRNA	predicted gene, 39469
novel_NIR_19936	chr9	124067348	124074306	-	124058114	124074306	A3SS	ENSMUST00000189915.7	novel	0.20	4	16	4	16	y	0.10	3	26	3	26	n	0.25	9	27	9	27	y	0.32	10	21	10	21	y	0.21	8	31	8	31	y	0.04	1	27	1	27	n	0.05	2	39	2	39	n	0.00	0	29	0	29	n	0.12	3	22	3	22	n	0.12	3	22	3	22	n	0.19	4	17	4	17	y	0.11	2	17	2	17	n	ENSMUSG00000074829.11	2010315B03Rik	chr9	protein_coding	RIKEN cDNA 2010315B03 gene
novel_NIR_19937	chr9	124067348	124074306	-	124067348	124075190	A5SS	ENSMUST00000071300.13	novel	0.80	4	1	4	1	y	0.75	3	1	3	1	y	0.82	9	2	9	2	y	0.83	10	2	10	2	y	1.00	8	0	8	0	y	1.00	1	0	1	0	n	0.67	2	1	2	1	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.75	3	1	3	1	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	ENSMUSG00000074829.11	2010315B03Rik	chr9	protein_coding	RIKEN cDNA 2010315B03 gene
novel_NIR_19938	chr9	124074380	124074933	-	124074380	124075190	A5SS	ENSMUST00000185949.2	novel	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.21	3	11	3	11	y	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.20	1	4	1	4	n	ENSMUSG00000074829.11	2010315B03Rik	chr9	protein_coding	RIKEN cDNA 2010315B03 gene
novel_NIR_19939	chr9	124074380	124075066	-	124074380	124075190	A5SS	ENSMUST00000185949.2	novel	0.10	1	9	1	9	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.08	1	11	1	11	n	0.08	1	12	1	12	n	0.15	2	11	2	11	y	0.14	1	6	1	6	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.23	3	10	3	10	y	0.00	0	9	0	9	n	0.00	0	4	0	4	n	ENSMUSG00000074829.11	2010315B03Rik	chr9	protein_coding	RIKEN cDNA 2010315B03 gene
novel_NIR_19940	chr9	124196069	124196341	+	124196069	124197153	A3SS	ENSMUST00000239563.2	novel	0.80	8	2	8	2	y	0.83	5	1	5	1	y	0.22	2	7	2	7	n	0.00	0	5	0	5	n	0.27	3	8	3	8	y	0.29	2	5	2	5	y	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.22	2	7	2	7	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000093803.6	Ppp2r3d	chr9	protein_coding	protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta
novel_NIR_19941	chr9	124196069;124196471	124196341;124197153	+	124196069	124197153	cassetteExon	ENSMUST00000239563.2	novel	0.67	4.0	2	8;0	2	n	0.71	2.5	1	5;0	1	n	0.22	2.0	7	2;2	7	y	0.00	0.0	5	0;0	5	n	0.16	1.5	8	3;0	8	n	0.17	1.0	5	2;0	5	n	0.09	0.5	5	0;1	5	n	0.00	0.0	1	0;0	1	n	0.11	0.5	4	1;0	4	n	0.18	1.5	7	2;1	7	n	0.00	0.0	2	0;0	2	n	0.00	0.0	2	0;0	2	n	ENSMUSG00000093803.6	Ppp2r3d	chr9	protein_coding	protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta
novel_NIR_19942	chr9	124196471	124197153	+	124196747	124197153	A5SS	ENSMUST00000188509.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.08	1	11	1	11	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.09	1	10	1	10	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000093803.6	Ppp2r3d	chr9	protein_coding	protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta
novel_NIR_19943	chr9	124198454	124198704	+	124198031	124198704	A5SS	ENSMUST00000239563.2	novel	0.00	0	17	0	17	n	0.00	0	21	0	21	n	0.05	1	21	1	21	n	0.00	0	16	0	16	n	0.17	5	25	5	25	y	0.00	0	13	0	13	n	0.05	2	37	2	37	n	0.12	1	7	1	7	n	0.00	0	16	0	16	n	0.04	1	23	1	23	n	0.00	0	21	0	21	n	0.03	1	28	1	28	n	ENSMUSG00000093803.6	Ppp2r3d	chr9	protein_coding	protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta
novel_NIR_19944	chr9	124201170	124201277	+	124201025	124201277	A5SS	ENSMUST00000216394.2	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.40	4	6	4	6	y	0.50	3	3	3	3	y	0.25	1	3	1	3	n	0.25	1	3	1	3	n	1.00	2	0	2	0	y	0.67	2	1	2	1	y	0.50	3	3	3	3	y	1.00	6	0	6	0	y	ENSMUSG00000093803.6	Ppp2r3d	chr9	protein_coding	protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta
novel_NIR_19945	chr9	124201170	124201277	+	124201056	124201277	A5SS	ENSMUST00000239563.2	novel	0.00	0	34	0	34	n	0.00	0	47	0	47	n	0.02	1	42	1	42	n	0.00	0	45	0	45	n	0.08	4	48	4	48	n	0.09	3	31	3	31	n	0.02	1	44	1	44	n	0.04	1	26	1	26	n	0.05	2	35	2	35	n	0.04	2	53	2	53	n	0.12	3	23	3	23	n	0.15	6	34	6	34	y	ENSMUSG00000093803.6	Ppp2r3d	chr9	protein_coding	protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta
novel_NIR_19946	chr9	124201395	124201795	+	124201401	124201795	A5SS	ENSMUST00000239563.2	novel	1.00	43	0	43	0	y	1.00	53	0	53	0	y	1.00	55	0	55	0	y	1.00	41	0	41	0	y	1.00	57	0	57	0	y	1.00	21	0	21	0	y	1.00	46	0	46	0	y	1.00	33	0	33	0	y	1.00	40	0	40	0	y	1.00	48	0	48	0	y	1.00	47	0	47	0	y	1.00	50	0	50	0	y	ENSMUSG00000093803.6	Ppp2r3d	chr9	protein_coding	protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta
novel_NIR_19947	chr9	124201907	124202203	+	124201907	124202111	A3SS	ENSMUST00000239563.2	novel	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000093803.6	Ppp2r3d	chr9	protein_coding	protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta
novel_NIR_19948	chr9	124201907	124202240	+	124201907	124202111	A3SS	ENSMUST00000239563.2	novel	1.00	35	0	35	0	y	1.00	46	0	46	0	y	1.00	40	0	40	0	y	1.00	29	0	29	0	y	1.00	47	0	47	0	y	1.00	10	0	10	0	y	1.00	35	0	35	0	y	1.00	18	0	18	0	y	1.00	35	0	35	0	y	1.00	50	0	50	0	y	1.00	35	0	35	0	y	0.94	33	2	33	2	y	ENSMUSG00000093803.6	Ppp2r3d	chr9	protein_coding	protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta
novel_NIR_19949	chr9	13246676	13248887	+	13246676	13248884	A3SS	ENSMUST00000110583.12	novel	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000079084.13	Ccdc82	chr9	protein_coding	coiled-coil domain containing 82
novel_NIR_19950	chr9	13246676	13248887	+	13246676	13251696	A3SS	ENSMUST00000217444.4	novel	0.25	2	6	2	6	y	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	ENSMUSG00000079084.13	Ccdc82	chr9	protein_coding	coiled-coil domain containing 82
novel_NIR_19951	chr9	13246676	13248887	+	13246676	13252851	A3SS	ENSMUST00000239561.1	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000079084.13	Ccdc82	chr9	protein_coding	coiled-coil domain containing 82
novel_NIR_19952	chr9	13282070;13289358	13289301;13289701	+	13282070	13289701	cassetteExon	ENSMUST00000217444.4	novel	0.50	2.0	2	0;4	2	n	0.11	0.5	4	1;0	4	n	0.09	1.5	15	1;2	15	n	0.00	0.0	5	0;0	5	n	0.00	0.0	4	0;0	4	n	1.00	0.5	0	1;0	0	n	0.22	2.0	7	2;2	7	y	0.38	3.0	5	4;2	5	y	0.33	1.0	2	1;1	2	n	0.00	0.0	7	0;0	7	n	0.29	2.0	5	2;2	5	y	0.00	0.0	9	0;0	9	n	ENSMUSG00000079084.13	Ccdc82	chr9	protein_coding	coiled-coil domain containing 82
novel_NIR_19953	chr9	13289358	13289701	+	13282070	13289701	A5SS	ENSMUST00000217444.4	novel	0.67	4	2	4	2	y	0.00	0	4	0	4	n	0.12	2	15	2	15	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.22	2	7	2	7	n	0.29	2	5	2	5	n	0.33	1	2	1	2	n	0.00	0	7	0	7	n	0.29	2	5	2	5	n	0.00	0	9	0	9	n	ENSMUSG00000079084.13	Ccdc82	chr9	protein_coding	coiled-coil domain containing 82
novel_NIR_19954	chr9	13721954	13723929	-	13721300	13723929	A3SS	ENSMUST00000142494.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031922.13	Cep57	chr9	protein_coding	centrosomal protein 57
novel_NIR_19955	chr9	13721954	13723929	-	13722158	13723929	A3SS	ENSMUST00000034398.12	novel	0.00	0	21	0	21	n	0.00	0	9	0	9	n	0.00	0	25	0	25	n	0.00	0	14	0	14	n	0.00	0	19	0	19	n	0.10	1	9	1	9	n	0.06	1	16	1	16	n	0.15	2	11	2	11	y	0.00	0	15	0	15	n	0.00	0	31	0	31	n	0.00	0	20	0	20	n	0.00	0	17	0	17	n	ENSMUSG00000031922.13	Cep57	chr9	protein_coding	centrosomal protein 57
novel_NIR_19956	chr9	13742433;13743063	13742930;13744268	+	13742433	13744268	cassetteExon	ENSMUST00000059579.12	novel	0.08	1.0	12	0;2	12	n	0.00	0.0	13	0;0	13	n	0.17	4.0	19	3;5	19	y	0.12	2.0	14	2;2	14	n	0.05	1.0	18	0;2	18	n	0.27	3.0	8	3;3	8	y	0.14	2.5	15	2;3	15	n	0.08	0.5	6	0;1	6	n	0.33	4.0	8	3;5	8	y	0.05	0.5	10	0;1	10	n	0.38	3.0	5	4;2	5	y	0.06	2.0	29	2;2	29	n	ENSMUSG00000037808.14	Fam76b	chr9	protein_coding	family with sequence similarity 76, member B
novel_NIR_19957	chr9	13747479	13748136	+	13747479	13747955	A3SS&ES	ENSMUST00000156680.2	novel	0.11	1	8	1	8	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.36	4	7	4	7	y	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.53	8	7	8	7	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	ENSMUSG00000037808.14	Fam76b	chr9	protein_coding	family with sequence similarity 76, member B
novel_NIR_19958	chr9	13747479	13748136	+	13747479	13748133	A3SS	ENSMUST00000059579.12	novel	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.00	0	23	0	23	n	0.00	0	10	0	10	n	0.25	4	12	4	12	y	0.25	2	6	2	6	y	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.40	8	12	8	12	y	0.00	0	2	0	2	n	0.00	0	15	0	15	n	ENSMUSG00000037808.14	Fam76b	chr9	protein_coding	family with sequence similarity 76, member B
novel_NIR_19959	chr9	13748012	13748136	+	13748012	13748133	A3SS	ENSMUST00000156680.2	novel	0.00	0	5	0	5	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.18	2	9	2	9	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.20	1	4	1	4	n	ENSMUSG00000037808.14	Fam76b	chr9	protein_coding	family with sequence similarity 76, member B
novel_NIR_19960	chr9	14219843	14221544	+	14219843	14231591	A3SS	ENSMUST00000209106.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032009.9	Sesn3	chr9	protein_coding	sestrin 3
novel_NIR_19961	chr9	14219843	14221544	+	14219954	14221544	A5SS	ENSMUST00000034507.9	novel	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	18	0	18	n	0.25	2	6	2	6	y	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	20	0	20	n	ENSMUSG00000032009.9	Sesn3	chr9	protein_coding	sestrin 3
novel_NIR_19962	chr9	14412053	14413212	+	14412597	14413212	5pMXE	ENSMUST00000215143.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000004096.10	Cwc15	chr9	protein_coding	CWC15 spliceosome-associated protein
novel_NIR_19963	chr9	15187361	15190846	-	15185881	15190846	A3SS	ENSMUST00000216406.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000031935.10	Med17	chr9	protein_coding	mediator complex subunit 17
novel_NIR_19964	chr9	15187361	15190846	-	15187361;15189019	15188853;15190846	ES	ENSMUST00000034411.10	novel	0.00	0	20.5	0	32;9	n	0.07	1	14.0	1	25;3	n	0.04	1	25.5	1	37;14	n	0.00	0	17.5	0	23;12	n	0.00	0	27.0	0	35;19	n	0.18	2	9.0	2	12;6	y	0.00	0	29.5	0	44;15	n	0.00	0	14.0	0	23;5	n	0.00	0	12.5	0	14;11	n	0.00	0	28.5	0	47;10	n	0.05	1	19.0	1	25;13	n	0.04	1	21.5	1	32;11	n	ENSMUSG00000031935.10	Med17	chr9	protein_coding	mediator complex subunit 17
novel_NIR_19965	chr9	15190307	15190846	-	15185881	15190846	A3SS	ENSMUST00000216406.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000031935.10	Med17	chr9	protein_coding	mediator complex subunit 17
novel_NIR_19966	chr9	15209196	15212663	-	15206055	15212663	A3SS	ENSMUST00000216955.2	novel	0.33	1	2	1	2	n	0.67	4	2	4	2	y	1.00	3	0	3	0	y	0.61	11	7	11	7	y	0.54	7	6	7	6	y	0.00	0	1	0	1	n	0.54	7	6	7	6	y	0.00	0	1	0	1	n	0.50	3	3	3	3	n	0.47	9	10	9	10	y	0.36	5	9	5	9	y	1.00	2	0	2	0	y	ENSMUSG00000031938.16	4931406C07Rik	chr9	protein_coding	RIKEN cDNA 4931406C07 gene
novel_NIR_19967	chr9	15212809	15212888	-	15212809	15217333	A5SS	ENSMUST00000178977.9	novel	0.06	4	64	4	64	n	0.00	0	41	0	41	n	0.12	3	21	3	21	n	0.00	0	76	0	76	n	0.03	3	92	3	92	n	0.20	5	20	5	20	y	0.08	7	78	7	78	n	0.17	6	30	6	30	y	0.00	0	78	0	78	n	0.03	3	109	3	109	n	0.02	1	49	1	49	n	0.04	3	82	3	82	n	ENSMUSG00000031938.16	4931406C07Rik	chr9	protein_coding	RIKEN cDNA 4931406C07 gene
novel_NIR_19968	chr9	15212809	15212888	-	15212809	15217510	A5SS	ENSMUST00000180339.8	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	1.00	3	0	3	0	y	1.00	5	0	5	0	y	1.00	7	0	7	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	ENSMUSG00000031938.16	4931406C07Rik	chr9	protein_coding	RIKEN cDNA 4931406C07 gene
novel_NIR_19969	chr9	15216297	15217333	-	15212809	15217333	A3SS	ENSMUST00000178977.9	novel	0.04	3	64	3	64	n	0.09	4	41	4	41	n	0.16	4	21	4	21	y	0.06	5	76	5	76	n	0.04	4	92	4	92	n	0.17	4	20	4	20	y	0.07	6	78	6	78	n	0.12	4	30	4	30	n	0.04	3	78	3	78	n	0.04	4	109	4	109	n	0.06	3	49	3	49	n	0.07	6	82	6	82	n	ENSMUSG00000031938.16	4931406C07Rik	chr9	protein_coding	RIKEN cDNA 4931406C07 gene
novel_NIR_19970	chr9	15222991	15225286	+	15222991	15223114	3pMXE	ENSMUST00000214316.2	novel	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031939.17	Taf1d	chr9	protein_coding	TATA-box binding protein associated factor, RNA polymerase I, D
novel_NIR_19971	chr9	15222991	15225286	+	15222991	15223205	3pMXE	ENSMUST00000034415.6	novel	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	ENSMUSG00000031939.17	Taf1d	chr9	protein_coding	TATA-box binding protein associated factor, RNA polymerase I, D
novel_NIR_19972	chr9	15222991	15225286	+	15224132	15225286	5pMXE	ENSMUST00000216768.2	novel	0.00	0	17	0	17	n	0.17	2	10	2	10	y	0.00	0	33	0	33	n	0.00	0	23	0	23	n	0.00	0	22	0	22	n	0.00	0	7	0	7	n	0.00	0	27	0	27	n	0.00	0	13	0	13	n	0.09	1	10	1	10	n	0.00	0	23	0	23	n	0.00	0	26	0	26	n	0.00	0	20	0	20	n	ENSMUSG00000031939.17	Taf1d	chr9	protein_coding	TATA-box binding protein associated factor, RNA polymerase I, D
novel_NIR_19973	chr9	15243807	15244288	-	15242206	15244288	A3SS	ENSMUST00000059410.15	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000046111.18	Cep295	chr9	protein_coding	centrosomal protein 295
novel_NIR_19974	chr9	15246964	15247612	-	15246964;15247279	15247145;15247612	ES	ENSMUST00000059410.15	novel	0.00	0	4.5	0	4;5	n	0.00	0	2.5	0	3;2	n	0.00	0	6.5	0	3;10	n	0.00	0	1.0	0	2;0	n	0.00	0	5.0	0	4;6	n	0.00	0	2.5	0	4;1	n	0.00	0	5.5	0	6;5	n	0.00	0	1.5	0	2;1	n	0.00	0	2.0	0	1;3	n	0.67	2	1.0	2	2;0	y	0.00	0	1.0	0	0;2	n	0.00	0	4.5	0	6;3	n	ENSMUSG00000046111.18	Cep295	chr9	protein_coding	centrosomal protein 295
novel_NIR_19975	chr9	15255556	15258237	-	15255560	15258237	A3SS	ENSMUST00000161132.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000046111.18	Cep295	chr9	protein_coding	centrosomal protein 295
novel_NIR_19976	chr9	15405445	15436924	+	15404925	15436924	A5SS	ENSMUST00000215907.2	novel	0.00	0	21	0	21	n	0.15	7	39	7	39	y	0.00	0	42	0	42	n	0.09	3	30	3	30	n	0.02	1	47	1	47	n	0.03	1	29	1	29	n	0.07	3	42	3	42	n	0.00	0	26	0	26	n	0.00	0	16	0	16	n	0.00	0	34	0	34	n	0.00	0	32	0	32	n	0.10	3	28	3	28	n	ENSMUSG00000058173.13	Smco4	chr9	protein_coding	single-pass membrane protein with coiled-coil domains 4
novel_NIR_19977	chr9	15405445	15436924	+	15416937	15436924	5pMXE	ENSMUST00000045620.10	novel	0.00	0	1	0	1	n	0.88	7	1	7	1	y	0.00	0	4	0	4	n	0.60	3	2	3	2	y	0.33	1	2	1	2	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000058173.13	Smco4	chr9	protein_coding	single-pass membrane protein with coiled-coil domains 4
novel_NIR_19978	chr9	15405445	15436924	+	15432175	15436924	5pMXE	ENSMUST00000178999.3	novel	-	-	-	-	-	-	0.78	7	2	7	2	y	0.00	0	2	0	2	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000058173.13	Smco4	chr9	protein_coding	single-pass membrane protein with coiled-coil domains 4
novel_NIR_19979	chr9	15493907	15499282	-	15486640	15499282	A3SS	ENSMUST00000115592.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039977.17	Deup1	chr9	protein_coding	deuterosome assembly protein 1
novel_NIR_19980	chr9	15493907	15499282	-	15493907;15495625	15495431;15499282	ES	ENSMUST00000045513.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039977.17	Deup1	chr9	protein_coding	deuterosome assembly protein 1
novel_NIR_19981	chr9	15493907	15499282	-	15495625	15499282	3pMXE	ENSMUST00000152377.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000039977.17	Deup1	chr9	protein_coding	deuterosome assembly protein 1
novel_NIR_19982	chr9	15633288	15634810	+	15633317	15634810	A5SS	ENSMUST00000115588.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.38	6	10	6	10	y	0.43	3	4	3	4	y	0.33	2	4	2	4	y	0.20	1	4	1	4	n	0.40	2	3	2	3	y	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.50	4	4	4	4	y	1.00	2	0	2	0	y	0.33	3	6	3	6	y	ENSMUSG00000043885.15	Slc36a4	chr9	protein_coding	solute carrier family 36 (proton/amino acid symporter), member 4
novel_NIR_19983	chr9	18508652	18512310	-	18508652	18513780	A5SS	ENSMUST00000207857.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000109564.2	Muc16	chr9	protein_coding	mucin 16
novel_NIR_19984	chr9	18508652	18512310	-	18508652	18519007	A5SS	ENSMUST00000208663.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000109564.2	Muc16	chr9	protein_coding	mucin 16
novel_NIR_19985	chr9	19536933	19540393	+	19533581	19540393	A5SS	ENSMUST00000213725.2	novel	0.21	3	11	3	11	y	0.00	0	4	0	4	n	0.10	1	9	1	9	n	0.18	2	9	2	9	y	0.25	2	6	2	6	y	0.00	0	9	0	9	n	0.10	1	9	1	9	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.13	2	13	2	13	n	ENSMUSG00000057551.11	Zfp317	chr9	protein_coding	zinc finger protein 317
novel_NIR_19986	chr9	19536933	19540393	+	19536933;19537291	19537212;19540393	ES	ENSMUST00000215372.2	novel	1.00	3	0.0	3	0;0	y	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	1.00	2	0.0	2	0;0	y	1.00	2	0.0	2	0;0	y	0.00	0	1.5	0	0;3	n	1.00	1	0.0	1	0;0	n	0.00	0	0.5	0	0;1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	ENSMUSG00000057551.11	Zfp317	chr9	protein_coding	zinc finger protein 317
novel_NIR_19987	chr9	19552550	19553284	+	19552550	19553260	A3SS	ENSMUST00000208694.2	novel	0.08	1	12	1	12	n	0.00	0	9	0	9	n	0.25	4	12	4	12	y	0.00	0	16	0	16	n	0.05	1	18	1	18	n	0.00	0	9	0	9	n	0.15	3	17	3	17	y	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.10	2	19	2	19	n	0.18	2	9	2	9	y	0.11	2	17	2	17	n	ENSMUSG00000057551.11	Zfp317	chr9	protein_coding	zinc finger protein 317
novel_NIR_19988	chr9	19552550	19553284	+	19552550	19554905	A3SS	ENSMUST00000213725.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	ENSMUSG00000057551.11	Zfp317	chr9	protein_coding	zinc finger protein 317
novel_NIR_19989	chr9	19555000	19556508	+	19555000	19556521	A3SS	ENSMUST00000213725.2	novel	0.11	1	8	1	8	n	0.30	3	7	3	7	y	0.38	6	10	6	10	y	0.22	2	7	2	7	y	0.13	3	20	3	20	n	0.22	2	7	2	7	y	0.10	1	9	1	9	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.20	3	12	3	12	y	0.25	2	6	2	6	y	0.11	1	8	1	8	n	ENSMUSG00000057551.11	Zfp317	chr9	protein_coding	zinc finger protein 317
novel_NIR_19990	chr9	19556594	19557998	+	19556603	19557998	A5SS	ENSMUST00000213725.2	novel	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.11	2	17	2	17	n	0.00	0	13	0	13	n	0.12	3	22	3	22	n	0.00	0	12	0	12	n	0.00	0	18	0	18	n	0.21	3	11	3	11	y	0.00	0	13	0	13	n	0.00	0	17	0	17	n	0.14	2	12	2	12	n	0.05	1	20	1	20	n	ENSMUSG00000057551.11	Zfp317	chr9	protein_coding	zinc finger protein 317
novel_NIR_19991	chr9	20260455	20261828	-	20260455;20260959	20260877;20261828	ES	ENSMUST00000068079.14	novel	0.67	2	1.0	2	0;2	y	1.00	2	0.0	2	0;0	y	1.00	5	0.0	5	0;0	y	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	1	0.5	1	0;1	n	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000045519.16	Zfp560	chr9	protein_coding	zinc finger protein 560
novel_NIR_19992	chr9	20389550	20397613	-	20389550	20397626	A5SS	ENSMUST00000080386.13	novel	0.50	1	1	1	1	n	0.50	3	3	3	3	y	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.12	2	14	2	14	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.20	2	8	2	8	y	0.00	0	7	0	7	n	0.33	1	2	1	2	n	0.00	0	8	0	8	n	ENSMUSG00000059475.14	Zfp426	chr9	protein_coding	zinc finger protein 426
novel_NIR_19993	chr9	20389550	20397613	-	20389550	20403682	A5SS	ENSMUST00000115562.9	novel	0.50	1	1	1	1	n	1.00	3	0	3	0	y	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.22	2	7	2	7	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	ENSMUSG00000059475.14	Zfp426	chr9	protein_coding	zinc finger protein 426
novel_NIR_19994	chr9	20418125	20419315	-	20417361	20419315	A3SS	ENSMUST00000215908.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	4	2	4	2	y	ENSMUSG00000060510.15	Zfp266	chr9	protein_coding	zinc finger protein 266
novel_NIR_19995	chr9	20418125	20419315	-	20418178	20419315	A3SS	ENSMUST00000174462.8	novel	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.09	1	10	1	10	n	0.00	0	3	0	3	n	0.00	0	16	0	16	n	0.00	0	10	0	10	n	0.31	4	9	4	9	y	ENSMUSG00000060510.15	Zfp266	chr9	protein_coding	zinc finger protein 266
novel_NIR_19996	chr9	20418125	20419315	-	20419019	20419315	A3SS&ES	ENSMUST00000213418.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000060510.15	Zfp266	chr9	protein_coding	zinc finger protein 266
novel_NIR_19997	chr9	20502180	20504457	+	20502180;20502717	20502635;20504457	ES	ENSMUST00000115557.10	novel	0.00	0	2.5	0	1;4	n	0.00	0	7.0	0	7;7	n	0.00	0	8.5	0	8;9	n	0.17	1	5.0	1	5;5	n	0.22	2	7.0	2	6;8	y	0.00	0	7.0	0	8;6	n	0.00	0	5.0	0	5;5	n	0.00	0	4.5	0	6;3	n	0.00	0	5.0	0	4;6	n	0.00	0	10.5	0	13;8	n	0.00	0	6.0	0	8;4	n	0.00	0	8.0	0	8;8	n	ENSMUSG00000058192.17	Zfp846	chr9	protein_coding	zinc finger protein 846
novel_NIR_19998	chr9	20518926	20519050	+	20518926	20525890	A3SS	ENSMUST00000136376.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000062470.11	Fbxl12os	chr9	lncRNA	F-box and leucine-rich repeat protein 12, opposite strand
novel_NIR_19999	chr9	20550494	20552727	-	20550494	20553320	A5SS	ENSMUST00000131128.2	novel	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.40	2	3	2	3	y	0.14	2	12	2	12	n	0.15	2	11	2	11	y	0.00	0	1	0	1	n	0.08	1	12	1	12	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.14	1	6	1	6	n	0.00	0	12	0	12	n	0.33	3	6	3	6	y	ENSMUSG00000066892.15	Fbxl12	chr9	protein_coding	F-box and leucine-rich repeat protein 12
novel_NIR_20000	chr9	20553560	20555491	-	20553392	20555491	A3SS	ENSMUST00000086458.10	novel	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.17	2	10	2	10	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000066892.15	Fbxl12	chr9	protein_coding	F-box and leucine-rich repeat protein 12
novel_NIR_20001	chr9	20556782	20556918	+	20556789	20556918	A5SS	ENSMUST00000160874.8	novel	0.00	0	1	0	1	n	0.67	4	2	4	2	y	0.00	0	1	0	1	n	1.00	13	0	13	0	y	0.82	9	2	9	2	y	-	-	-	-	-	-	1.00	11	0	11	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	8	0	8	0	y	-	-	-	-	-	-	ENSMUSG00000084786.10	Ubl5	chr9	protein_coding	ubiquitin-like 5
novel_NIR_20002	chr9	20556784	20556918	+	20556789	20556918	A5SS	ENSMUST00000160874.8	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000084786.10	Ubl5	chr9	protein_coding	ubiquitin-like 5
novel_NIR_20003	chr9	20556785	20556934	+	20556785	20556898	A3SS	ENSMUST00000161486.8	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000084786.10	Ubl5	chr9	protein_coding	ubiquitin-like 5
novel_NIR_20004	chr9	20556785	20557826	+	20556785	20556898	A3SS&ES	ENSMUST00000161486.8	novel	0.00	0	2	0	2	n	0.80	4	1	4	1	y	0.50	4	4	4	4	y	0.25	1	3	1	3	n	0.50	5	5	5	5	y	0.25	1	3	1	3	n	0.20	1	4	1	4	n	1.00	5	0	5	0	y	0.25	1	3	1	3	n	0.40	2	3	2	3	y	0.67	2	1	2	1	y	1.00	2	0	2	0	y	ENSMUSG00000084786.10	Ubl5	chr9	protein_coding	ubiquitin-like 5
novel_NIR_20005	chr9	20780949	20781036	+	20780949	20781058	A3SS	ENSMUST00000176142.8	novel	0.04	1	24	1	24	n	0.00	0	14	0	14	n	0.10	6	54	6	54	n	0.04	1	26	1	26	n	0.08	4	44	4	44	n	0.00	0	13	0	13	n	0.18	5	23	5	23	y	0.08	3	33	3	33	n	0.28	9	23	9	23	y	0.16	4	21	4	21	y	0.05	2	36	2	36	n	0.02	1	44	1	44	n	ENSMUSG00000038884.15	Shfl	chr9	protein_coding	shiftless antiviral inhibitor of ribosomal frameshifting
novel_NIR_20006	chr9	20780949	20781598	+	20780949	20781058	3pMXE	ENSMUST00000176142.8	novel	0.20	6	24	6	24	y	0.26	5	14	5	14	y	0.08	5	54	5	54	n	0.00	0	26	0	26	n	0.04	2	44	2	44	n	0.00	0	13	0	13	n	0.18	5	23	5	23	y	0.08	3	33	3	33	n	0.04	1	23	1	23	n	0.05	1	21	1	21	n	0.03	1	36	1	36	n	0.10	5	44	5	44	n	ENSMUSG00000038884.15	Shfl	chr9	protein_coding	shiftless antiviral inhibitor of ribosomal frameshifting
novel_NIR_20007	chr9	20851850	20852648	-	20851850	20852669	A5SS	ENSMUST00000004202.17	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000004099.17	Dnmt1	chr9	protein_coding	DNA methyltransferase (cytosine-5) 1
novel_NIR_20008	chr9	20918152	20918730	+	20918152	20918624	A3SS	ENSMUST00000214124.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000003299.11	Mrpl4	chr9	protein_coding	mitochondrial ribosomal protein L4
novel_NIR_20009	chr9	20941119	20941200	+	20941119	20941233	A3SS	ENSMUST00000001040.7	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	ENSMUSG00000001014.7	Icam4	chr9	protein_coding	intercellular adhesion molecule 4, Landsteiner-Wiener blood group
novel_NIR_20010	chr9	20984614	20985736	-	20984614	20986587	A5SS	ENSMUST00000217359.2	novel	-	-	-	-	-	-	0.50	3	3	3	3	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000111497.2	Gm38431	chr9	protein_coding	predicted gene, 38431
novel_NIR_20011	chr9	21103972	21105871	+	21103886	21105871	A5SS	ENSMUST00000039413.15	novel	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.29	4	10	4	10	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	ENSMUSG00000032177.18	Pde4a	chr9	protein_coding	phosphodiesterase 4A, cAMP specific
novel_NIR_20012	chr9	21157529	21159265	-	21157529	21159689	A5SS	ENSMUST00000122088.2	novel	0.00	0	8	0	8	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	16	0	16	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.30	3	7	3	7	y	0.00	0	4	0	4	n	0.00	0	10	0	10	n	ENSMUSG00000045087.9	S1pr5	chr9	protein_coding	sphingosine-1-phosphate receptor 5
novel_NIR_20013	chr9	21177013	21177893	+	21177013	21177889	A3SS	ENSMUST00000217269.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000002820.7	Atg4d	chr9	protein_coding	autophagy related 4D, cysteine peptidase
novel_NIR_20014	chr9	21177013	21178044	+	21177013	21177889	A3SS	ENSMUST00000217269.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000002820.7	Atg4d	chr9	protein_coding	autophagy related 4D, cysteine peptidase
novel_NIR_20015	chr9	21299446	21299805	+	21299093	21299805	A5SS	ENSMUST00000214852.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000032178.15	Ilf3	chr9	protein_coding	interleukin enhancer binding factor 3
novel_NIR_20016	chr9	21300049	21303591	+	21300049;21300779	21300602;21303591	ES	ENSMUST00000067646.12	novel	0.10	1	9.0	1	12;6	n	0.00	0	4.5	0	5;4	n	0.05	1	19.0	1	13;25	n	0.00	0	8.5	0	7;10	n	0.00	0	21.5	0	18;25	n	0.00	0	3.0	0	4;2	n	0.26	4	11.5	4	11;12	y	0.27	3	8.0	3	3;13	y	0.00	0	10.5	0	12;9	n	0.00	0	15.0	0	11;19	n	0.00	0	6.5	0	4;9	n	0.09	2	20.5	2	20;21	n	ENSMUSG00000032178.15	Ilf3	chr9	protein_coding	interleukin enhancer binding factor 3
novel_NIR_20017	chr9	21309432	21310424	+	21309432	21310409	A3SS	ENSMUST00000215169.2	novel	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032178.15	Ilf3	chr9	protein_coding	interleukin enhancer binding factor 3
novel_NIR_20018	chr9	21309432	21310424	+	21309432	21310421	A3SS	ENSMUST00000067646.12	novel	0.00	0	17	0	17	n	0.23	3	10	3	10	y	0.00	0	21	0	21	n	0.05	1	20	1	20	n	0.00	0	24	0	24	n	0.00	0	12	0	12	n	0.00	0	22	0	22	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.00	0	15	0	15	n	0.00	0	21	0	21	n	0.00	0	25	0	25	n	ENSMUSG00000032178.15	Ilf3	chr9	protein_coding	interleukin enhancer binding factor 3
novel_NIR_20019	chr9	21323597	21323734	+	21323597	21323667	A3SS	ENSMUST00000216277.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000002825.9	Qtrt1	chr9	protein_coding	queuine tRNA-ribosyltransferase catalytic subunit 1
novel_NIR_20020	chr9	21323597	21323734	+	21323597	21323689	A3SS	ENSMUST00000002902.8	novel	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	20	0	20	n	0.00	0	11	0	11	n	0.15	2	11	2	11	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	ENSMUSG00000002825.9	Qtrt1	chr9	protein_coding	queuine tRNA-ribosyltransferase catalytic subunit 1
novel_NIR_20021	chr9	21328439	21328554	+	21328439	21328568	A3SS	ENSMUST00000002902.8	novel	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	20	0	20	n	0.18	2	9	2	9	y	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.00	0	18	0	18	n	0.00	0	26	0	26	n	ENSMUSG00000002825.9	Qtrt1	chr9	protein_coding	queuine tRNA-ribosyltransferase catalytic subunit 1
novel_NIR_20022	chr9	21390333	21391703	+	21389644	21391703	A5SS	ENSMUST00000173397.8	novel	0.21	5	19	5	19	y	0.00	0	15	0	15	n	0.05	2	40	2	40	n	0.00	0	24	0	24	n	0.08	3	34	3	34	n	0.00	0	23	0	23	n	0.14	4	25	4	25	n	0.00	0	9	0	9	n	0.17	2	10	2	10	y	0.13	3	20	3	20	n	0.00	0	21	0	21	n	0.00	0	27	0	27	n	ENSMUSG00000033335.18	Dnm2	chr9	protein_coding	dynamin 2
novel_NIR_20023	chr9	21420410	21420558	-	21420410	21420585	A5SS	ENSMUST00000214576.2	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.18	2	9	2	9	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000032180.12	Tmed1	chr9	protein_coding	transmembrane p24 trafficking protein 1
novel_NIR_20024	chr9	21420410	21420558	-	21420410	21421290	A5SS	ENSMUST00000214285.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032180.12	Tmed1	chr9	protein_coding	transmembrane p24 trafficking protein 1
novel_NIR_20025	chr9	21503514	21503592	-	21503514	21504023	A5SS	ENSMUST00000213809.2	novel	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.50	5	5	5	5	y	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.30	3	7	3	7	y	0.33	1	2	1	2	n	0.00	0	6	0	6	n	0.14	1	6	1	6	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000032182.16	Yipf2	chr9	protein_coding	Yip1 domain family, member 2
novel_NIR_20026	chr9	21667591	21668527	-	21667591	21668586	A5SS	ENSMUST00000216057.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.25	1	3	1	3	n	0.25	1	3	1	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	ENSMUSG00000074476.7	Spc24	chr9	protein_coding	SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)
novel_NIR_20027	chr9	21714414	21715218	-	21714199	21715218	A3SS	ENSMUST00000217310.2	novel	0.00	0	4	0	4	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.44	4	5	4	5	y	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.14	1	6	1	6	n	ENSMUSG00000032198.10	Dock6	chr9	protein_coding	dedicator of cytokinesis 6
novel_NIR_20028	chr9	21714414	21715218	-	21714414	21715906	A5SS	ENSMUST00000217336.2	novel	0.00	0	21	0	21	n	0.05	1	20	1	20	n	0.00	0	18	0	18	n	0.00	0	11	0	11	n	0.00	0	23	0	23	n	0.00	0	11	0	11	n	0.19	4	17	4	17	y	0.08	1	11	1	11	n	0.00	0	21	0	21	n	0.11	1	8	1	8	n	0.00	0	8	0	8	n	0.04	1	22	1	22	n	ENSMUSG00000032198.10	Dock6	chr9	protein_coding	dedicator of cytokinesis 6
novel_NIR_20029	chr9	21714419	21715218	-	21714199	21715218	A3SS	ENSMUST00000217310.2	novel	0.50	4	4	4	4	y	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	1	0	1	n	1.00	8	0	8	0	y	-	-	-	-	-	-	0.00	0	5	0	5	n	0.40	2	3	2	3	y	0.67	4	2	4	2	y	0.78	7	2	7	2	y	0.70	7	3	7	3	y	0.60	9	6	9	6	y	ENSMUSG00000032198.10	Dock6	chr9	protein_coding	dedicator of cytokinesis 6
novel_NIR_20030	chr9	21729269	21731818	-	21729269;21731728	21731559;21731818	ES	ENSMUST00000217336.2	novel	0.00	0	10.0	0	5;15	n	0.00	0	7.5	0	9;6	n	0.07	1	13.5	1	14;13	n	0.20	2	8.0	2	7;9	y	0.00	0	21.0	0	22;20	n	0.00	0	9.5	0	10;9	n	0.00	0	12.0	0	10;14	n	0.00	0	11.5	0	17;6	n	0.00	0	11.0	0	14;8	n	0.00	0	12.0	0	10;14	n	0.00	0	14.0	0	15;13	n	0.00	0	18.5	0	23;14	n	ENSMUSG00000032198.10	Dock6	chr9	protein_coding	dedicator of cytokinesis 6
novel_NIR_20031	chr9	21734852	21735693	-	21733144	21735693	A3SS	ENSMUST00000217336.2	novel	0.20	2	8	2	8	y	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	18	0	18	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	17	0	17	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	ENSMUSG00000032198.10	Dock6	chr9	protein_coding	dedicator of cytokinesis 6
novel_NIR_20032	chr9	21734852	21735693	-	21734856	21735693	A3SS	ENSMUST00000216626.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032198.10	Dock6	chr9	protein_coding	dedicator of cytokinesis 6
novel_NIR_20033	chr9	21740874	21741259	-	21740874	21741510	A5SS	ENSMUST00000217336.2	novel	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	ENSMUSG00000032198.10	Dock6	chr9	protein_coding	dedicator of cytokinesis 6
novel_NIR_20034	chr9	21827239	21837287	-	21827239	21829318	5pMXE	ENSMUST00000115351.10	novel	0.00	0	18	0	18	n	0.00	0	10	0	10	n	0.00	0	35	0	35	n	0.21	3	11	3	11	y	0.03	1	36	1	36	n	0.02	1	43	1	43	n	0.00	0	22	0	22	n	0.00	0	32	0	32	n	0.00	0	13	0	13	n	0.00	0	23	0	23	n	0.00	0	16	0	16	n	0.00	0	18	0	18	n	ENSMUSG00000019066.14	Rab3d	chr9	protein_coding	RAB3D, member RAS oncogene family
novel_NIR_20035	chr9	21827242	21829318	-	21827239	21829318	A3SS	ENSMUST00000115351.10	novel	0.00	0	18	0	18	n	0.23	3	10	3	10	y	0.03	1	35	1	35	n	0.00	0	11	0	11	n	0.03	1	36	1	36	n	0.09	4	43	4	43	n	0.00	0	22	0	22	n	0.06	2	32	2	32	n	0.00	0	13	0	13	n	0.00	0	23	0	23	n	0.00	0	16	0	16	n	0.05	1	18	1	18	n	ENSMUSG00000019066.14	Rab3d	chr9	protein_coding	RAB3D, member RAS oncogene family
novel_NIR_20036	chr9	21827242	21829318	-	21827362	21829318	A3SS	ENSMUST00000122211.8	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	0.33	1	2	1	2	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.80	4	1	4	1	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	ENSMUSG00000019066.14	Rab3d	chr9	protein_coding	RAB3D, member RAS oncogene family
novel_NIR_20037	chr9	21827242	21829318	-	21827860	21829318	A3SS&ES	ENSMUST00000128442.2	novel	-	-	-	-	-	-	0.75	3	1	3	1	y	0.25	1	3	1	3	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.44	4	5	4	5	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000019066.14	Rab3d	chr9	protein_coding	RAB3D, member RAS oncogene family
novel_NIR_20038	chr9	21837653	21838496	-	21837653	21837971	5pMXE	ENSMUST00000214569.2	novel	0.29	5	12	5	12	y	0.22	7	25	7	25	y	0.06	1	17	1	17	n	0.12	3	21	3	21	n	0.16	7	36	7	36	y	0.00	0	10	0	10	n	0.19	6	26	6	26	y	0.38	5	8	5	8	y	0.09	2	20	2	20	n	0.00	0	28	0	28	n	0.24	11	34	11	34	y	0.11	3	25	3	25	n	ENSMUSG00000040883.19	Tmem205	chr9	protein_coding	transmembrane protein 205
novel_NIR_20039	chr9	21837653	21838496	-	21837653	21838477	A5SS	ENSMUST00000213698.2	novel	0.15	5	28	5	28	y	0.16	7	36	7	36	y	0.04	1	26	1	26	n	0.10	3	26	3	26	n	0.13	7	45	7	45	n	0.00	0	18	0	18	n	0.17	6	30	6	30	y	0.16	5	27	5	27	y	0.06	2	31	2	31	n	0.00	0	35	0	35	n	0.22	11	40	11	40	y	0.10	3	26	3	26	n	ENSMUSG00000040883.19	Tmem205	chr9	protein_coding	transmembrane protein 205
novel_NIR_20040	chr9	21837653	21838656	-	21837653	21837971	5pMXE	ENSMUST00000214569.2	novel	0.25	4	12	4	12	y	0.11	3	25	3	25	n	0.00	0	17	0	17	n	0.00	0	21	0	21	n	0.03	1	36	1	36	n	0.09	1	10	1	10	n	0.00	0	26	0	26	n	0.00	0	8	0	8	n	0.00	0	20	0	20	n	0.00	0	28	0	28	n	0.00	0	34	0	34	n	0.07	2	25	2	25	n	ENSMUSG00000040883.19	Tmem205	chr9	protein_coding	transmembrane protein 205
novel_NIR_20041	chr9	21842632	21842995	+	21839021	21842995	A5SS	ENSMUST00000216710.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000006241.17	Ccdc159	chr9	protein_coding	coiled-coil domain containing 159
novel_NIR_20042	chr9	21842632	21842995	+	21842639	21842995	A5SS	ENSMUST00000006403.7	novel	0.00	0	26	0	26	n	0.00	0	28	0	28	n	0.00	0	20	0	20	n	0.00	0	15	0	15	n	0.00	0	30	0	30	n	0.20	2	8	2	8	y	0.00	0	30	0	30	n	0.00	0	25	0	25	n	0.00	0	15	0	15	n	0.00	0	33	0	33	n	0.00	0	27	0	27	n	0.00	0	27	0	27	n	ENSMUSG00000006241.17	Ccdc159	chr9	protein_coding	coiled-coil domain containing 159
novel_NIR_20043	chr9	21850674	21851994	+	21850674	21851981	A3SS	ENSMUST00000046371.13	novel	0.15	3	17	3	17	y	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.33	4	8	4	8	y	0.00	0	26	0	26	n	0.07	1	14	1	14	n	0.18	4	18	4	18	y	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.13	2	13	2	13	n	ENSMUSG00000040563.14	Plppr2	chr9	protein_coding	phospholipid phosphatase related 2
novel_NIR_20044	chr9	21850674	21851994	+	21850674	21852056	A3SS	ENSMUST00000188468.2	novel	0.75	3	1	3	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	4	0	4	0	y	0.00	0	5	0	5	n	0.33	1	2	1	2	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	ENSMUSG00000040563.14	Plppr2	chr9	protein_coding	phospholipid phosphatase related 2
novel_NIR_20045	chr9	21900321	21900661	-	21900255	21900661	A3SS	ENSMUST00000214026.2	novel	0.04	1	27	1	27	n	0.05	1	19	1	19	n	0.00	0	10	0	10	n	0.00	0	41	0	41	n	0.02	1	42	1	42	n	0.16	3	16	3	16	y	0.11	2	17	2	17	n	0.00	0	20	0	20	n	0.04	1	22	1	22	n	0.03	1	34	1	34	n	0.15	3	17	3	17	y	0.03	1	35	1	35	n	ENSMUSG00000040146.10	Rgl3	chr9	protein_coding	ral guanine nucleotide dissociation stimulator-like 3
novel_NIR_20046	chr9	21903304	21903457	-	21903304	21904168	A5SS	ENSMUST00000115336.10	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	ENSMUSG00000039632.14	Odad3	chr9	protein_coding	outer dynein arm docking complex subunit 3
novel_NIR_20047	chr9	21967388	21968583	-	21967388;21967824	21967710;21968583	ES	ENSMUST00000043922.7	novel	0.00	0	21.5	0	24;19	n	0.00	0	17.5	0	15;20	n	0.05	2	37.0	2	33;41	n	0.10	1	9.0	1	7;11	n	0.08	3	32.5	3	28;37	n	0.21	4	15.0	4	8;22	y	0.04	1	23.5	1	21;26	n	0.00	0	16.5	0	16;17	n	0.04	1	23.5	1	22;25	n	0.09	2	21.0	2	16;26	n	0.05	1	19.0	1	19;19	n	0.07	2	25.5	2	18;33	n	ENSMUSG00000038895.17	Zfp653	chr9	protein_coding	zinc finger protein 653
novel_NIR_20048	chr9	21967388	21968583	-	21967824	21968583	A3SS	ENSMUST00000216916.2	novel	0.00	0	19	0	19	n	0.00	0	20	0	20	n	0.05	2	41	2	41	n	0.08	1	11	1	11	n	0.07	3	37	3	37	n	0.15	4	22	4	22	y	0.04	1	26	1	26	n	0.00	0	17	0	17	n	0.04	1	25	1	25	n	0.07	2	26	2	26	n	0.05	1	19	1	19	n	0.06	2	33	2	33	n	ENSMUSG00000038895.17	Zfp653	chr9	protein_coding	zinc finger protein 653
novel_NIR_20049	chr9	21968969	21969100	-	21968974	21969100	A3SS	ENSMUST00000043922.7	novel	0.40	4	6	4	6	y	0.00	0	9	0	9	n	0.26	5	14	5	14	y	0.17	1	5	1	5	n	0.00	0	9	0	9	n	0.20	2	8	2	8	y	0.00	0	12	0	12	n	0.24	4	13	4	13	y	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.33	2	4	2	4	y	ENSMUSG00000038895.17	Zfp653	chr9	protein_coding	zinc finger protein 653
novel_NIR_20050	chr9	21968969	21969100	-	21968998	21969100	A3SS	ENSMUST00000179605.9	novel	0.40	4	6	4	6	y	0.00	0	4	0	4	n	0.18	5	23	5	23	y	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.33	2	4	2	4	y	0.00	0	7	0	7	n	0.57	4	3	4	3	y	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.40	2	3	2	3	y	ENSMUSG00000038895.17	Zfp653	chr9	protein_coding	zinc finger protein 653
novel_NIR_20051	chr9	21969012	21969100	-	21968974	21969100	A3SS	ENSMUST00000043922.7	novel	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.18	3	14	3	14	y	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.38	3	5	3	5	y	0.00	0	4	0	4	n	ENSMUSG00000038895.17	Zfp653	chr9	protein_coding	zinc finger protein 653
novel_NIR_20052	chr9	21969012	21969100	-	21968998	21969100	A3SS	ENSMUST00000179605.9	novel	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.12	3	23	3	23	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.50	3	3	3	3	y	0.00	0	3	0	3	n	ENSMUSG00000038895.17	Zfp653	chr9	protein_coding	zinc finger protein 653
novel_NIR_20053	chr9	21989561	21996653	-	21989561	21996645	A5SS	ENSMUST00000179422.8	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000066839.13	Ecsit	chr9	protein_coding	ECSIT signalling integrator
novel_NIR_20054	chr9	21995452	21996645	-	21987941	21996645	A3SS	ENSMUST00000177967.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000066839.13	Ecsit	chr9	protein_coding	ECSIT signalling integrator
novel_NIR_20055	chr9	21995452	21996645	-	21989561	21996645	A3SS	ENSMUST00000179422.8	novel	0.33	1	2	1	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000066839.13	Ecsit	chr9	protein_coding	ECSIT signalling integrator
novel_NIR_20056	chr9	21995452	21996653	-	21995504	21996653	A3SS	ENSMUST00000180180.8	novel	0.09	3	32	3	32	n	0.16	3	16	3	16	y	0.00	0	28	0	28	n	0.00	0	22	0	22	n	0.00	0	28	0	28	n	0.00	0	21	0	21	n	0.00	0	27	0	27	n	0.06	1	15	1	15	n	0.04	1	24	1	24	n	0.00	0	28	0	28	n	0.06	2	32	2	32	n	0.05	1	18	1	18	n	ENSMUSG00000066839.13	Ecsit	chr9	protein_coding	ECSIT signalling integrator
novel_NIR_20057	chr9	21995500	21996653	-	21995504	21996653	A3SS	ENSMUST00000180180.8	novel	0.14	5	32	5	32	n	0.06	1	16	1	16	n	0.07	2	28	2	28	n	0.21	6	22	6	22	y	0.20	7	28	7	28	y	0.05	1	21	1	21	n	0.18	6	27	6	27	y	0.00	0	15	0	15	n	0.04	1	24	1	24	n	0.03	1	28	1	28	n	0.11	4	32	4	32	n	0.18	4	18	4	18	y	ENSMUSG00000066839.13	Ecsit	chr9	protein_coding	ECSIT signalling integrator
novel_NIR_20058	chr9	22025239	22027343	-	22025239	22027951	A5SS	ENSMUST00000213233.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000013822.8	Elof1	chr9	protein_coding	ELF1 homolog, elongation factor 1
novel_NIR_20059	chr9	22025239	22028062	-	22025239	22027951	A5SS	ENSMUST00000213233.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	ENSMUSG00000013822.8	Elof1	chr9	protein_coding	ELF1 homolog, elongation factor 1
novel_NIR_20060	chr9	22025239	22028062	-	22025239	22028233	A5SS	ENSMUST00000214394.2	novel	0.00	0	5	0	5	n	-	-	-	-	-	-	0.17	2	10	2	10	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.14	1	6	1	6	n	ENSMUSG00000013822.8	Elof1	chr9	protein_coding	ELF1 homolog, elongation factor 1
novel_NIR_20061	chr9	22025239	22028141	-	22025239	22027951	A5SS	ENSMUST00000213233.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	ENSMUSG00000013822.8	Elof1	chr9	protein_coding	ELF1 homolog, elongation factor 1
novel_NIR_20062	chr9	22025239	22028141	-	22025239	22028233	A5SS	ENSMUST00000214394.2	novel	0.00	0	5	0	5	n	-	-	-	-	-	-	0.09	1	10	1	10	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.14	1	6	1	6	n	ENSMUSG00000013822.8	Elof1	chr9	protein_coding	ELF1 homolog, elongation factor 1
novel_NIR_20063	chr9	22043424	22048918	+	22038578	22048918	A5SS	ENSMUST00000214165.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000111856.2	6530413G14Rik	chr9	lncRNA	RIKEN cDNA 6530413G14 gene
novel_NIR_20064	chr9	22108483	22111273	-	22108511	22111273	A3SS	ENSMUST00000187399.2	novel	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	ENSMUSG00000090925.3	1810064F22Rik	chr9	lncRNA	RIKEN cDNA 1810064F22 gene
novel_NIR_20065	chr9	22117532	22125019	-	22120245	22125019	A3SS&ES	ENSMUST00000187399.2	novel	0.22	2	7	2	7	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.14	1	6	1	6	n	0.36	5	9	5	9	y	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.18	3	14	3	14	y	0.29	2	5	2	5	y	0.12	3	23	3	23	n	ENSMUSG00000090925.3	1810064F22Rik	chr9	lncRNA	RIKEN cDNA 1810064F22 gene
novel_NIR_20066	chr9	22117572	22119179	-	22117572	22120179	A5SS	ENSMUST00000187399.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000090925.3	1810064F22Rik	chr9	lncRNA	RIKEN cDNA 1810064F22 gene
novel_NIR_20067	chr9	22117572	22125019	-	22117572;22120245	22120179;22125019	ES	ENSMUST00000187399.2	novel	0.56	5	4.0	5	1;7	y	0.44	2	2.5	2	0;5	y	0.50	3	3.0	3	0;6	y	0.25	1	3.0	1	0;6	n	0.47	4	4.5	4	0;9	y	0.50	2	2.0	2	0;4	y	0.55	6	5.0	6	0;10	y	0.62	5	3.0	5	0;6	y	0.48	6	6.5	6	0;13	y	0.53	8	7.0	8	0;14	y	0.67	5	2.5	5	0;5	y	0.45	10	12.0	10	1;23	y	ENSMUSG00000090925.3	1810064F22Rik	chr9	lncRNA	RIKEN cDNA 1810064F22 gene
novel_NIR_20068	chr9	22117572	22125019	-	22120245	22125019	3pMXE	ENSMUST00000188595.2	novel	0.42	5	7	5	7	y	0.29	2	5	2	5	y	0.33	3	6	3	6	y	0.14	1	6	1	6	n	0.31	4	9	4	9	y	0.33	2	4	2	4	y	0.38	6	10	6	10	y	0.45	5	6	5	6	y	0.32	6	13	6	13	y	0.36	8	14	8	14	y	0.50	5	5	5	5	y	0.30	10	23	10	23	y	ENSMUSG00000090925.3	1810064F22Rik	chr9	lncRNA	RIKEN cDNA 1810064F22 gene
novel_NIR_20069	chr9	22146442	22147521	+	22146442	22149838	A3SS	ENSMUST00000215902.2	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000057982.9	Zfp809	chr9	protein_coding	zinc finger protein 809
novel_NIR_20070	chr9	22150549	22153590	+	22150549	22154330	A3SS	ENSMUST00000072465.9	novel	0.00	0	26	0	26	n	0.10	3	27	3	27	n	0.11	2	16	2	16	n	0.00	0	19	0	19	n	0.04	1	22	1	22	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.15	3	17	3	17	y	0.08	1	12	1	12	n	0.00	0	29	0	29	n	0.00	0	22	0	22	n	0.00	0	38	0	38	n	ENSMUSG00000057982.9	Zfp809	chr9	protein_coding	zinc finger protein 809
novel_NIR_20071	chr9	22150549	22165030	+	22150549	22154330	3pMXE	ENSMUST00000072465.9	novel	0.00	0	26	0	26	n	0.00	0	27	0	27	n	0.06	1	16	1	16	n	0.17	4	19	4	19	y	0.08	2	22	2	22	n	0.00	0	13	0	13	n	0.09	1	10	1	10	n	0.00	0	17	0	17	n	0.00	0	12	0	12	n	0.03	1	29	1	29	n	0.00	0	22	0	22	n	0.00	0	38	0	38	n	ENSMUSG00000057982.9	Zfp809	chr9	protein_coding	zinc finger protein 809
novel_NIR_20072	chr9	22153658	22154330	+	22150549	22154330	A5SS	ENSMUST00000072465.9	novel	0.00	0	26	0	26	n	0.16	5	27	5	27	n	0.11	2	16	2	16	n	0.21	5	19	5	19	y	0.19	5	22	5	22	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.00	0	17	0	17	n	0.00	0	12	0	12	n	0.03	1	29	1	29	n	0.00	0	22	0	22	n	0.00	0	38	0	38	n	ENSMUSG00000057982.9	Zfp809	chr9	protein_coding	zinc finger protein 809
novel_NIR_20073	chr9	22190576	22191734	-	22190576	22194464	A5SS	ENSMUST00000215202.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.29	2	5	2	5	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000066829.8	Zfp810	chr9	protein_coding	zinc finger protein 810
novel_NIR_20074	chr9	22190576	22191745	-	22190576	22191749	A5SS	ENSMUST00000086278.7	novel	0.15	2	11	2	11	y	0.00	0	14	0	14	n	0.05	2	35	2	35	n	0.00	0	7	0	7	n	0.03	1	30	1	30	n	0.06	1	17	1	17	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.29	2	5	2	5	y	ENSMUSG00000066829.8	Zfp810	chr9	protein_coding	zinc finger protein 810
novel_NIR_20075	chr9	22190576	22191745	-	22190576	22194464	A5SS	ENSMUST00000215202.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.29	2	5	2	5	y	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000066829.8	Zfp810	chr9	protein_coding	zinc finger protein 810
novel_NIR_20076	chr9	22191855	22193313	-	22191855	22194464	A5SS	ENSMUST00000086278.7	novel	0.29	2	5	2	5	y	0.00	0	10	0	10	n	0.00	0	20	0	20	n	0.00	0	11	0	11	n	0.18	3	14	3	14	y	0.00	0	21	0	21	n	0.00	0	6	0	6	n	0.00	0	19	0	19	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	ENSMUSG00000066829.8	Zfp810	chr9	protein_coding	zinc finger protein 810
novel_NIR_20077	chr9	22309313	22361098	-	22323241	22361098	3pMXE	ENSMUST00000215715.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	ENSMUSG00000032239.11	Rp9	chr9	protein_coding	retinitis pigmentosa 9 (human)
novel_NIR_20078	chr9	22329668	22335808	+	22323045	22335808	A5SS	ENSMUST00000214436.2	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036411.11	9530077C05Rik	chr9	protein_coding	RIKEN cDNA 9530077C05 gene
novel_NIR_20079	chr9	22360143	22361098	-	22323241	22361098	A3SS	ENSMUST00000215715.2	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	8	0	8	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032239.11	Rp9	chr9	protein_coding	retinitis pigmentosa 9 (human)
novel_NIR_20080	chr9	22360189	22361098	-	22323241	22361098	A3SS	ENSMUST00000215715.2	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.50	3	3	3	3	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000032239.11	Rp9	chr9	protein_coding	retinitis pigmentosa 9 (human)
novel_NIR_20081	chr9	22370037	22378973	-	22370037	22379860	A5SS	ENSMUST00000216973.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000032239.11	Rp9	chr9	protein_coding	retinitis pigmentosa 9 (human)
novel_NIR_20082	chr9	22404484	22408005	+	22402236	22408005	A5SS	ENSMUST00000039798.16	novel	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.22	2	7	2	7	y	0.00	0	15	0	15	n	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	ENSMUSG00000035919.17	Bbs9	chr9	protein_coding	Bardet-Biedl syndrome 9 (human)
novel_NIR_20083	chr9	22410838	22415341	+	22408155	22415341	A5SS	ENSMUST00000039798.16	novel	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	17	0	17	n	0.00	0	7	0	7	n	0.07	2	26	2	26	n	0.00	0	4	0	4	n	0.17	2	10	2	10	y	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.33	1	2	1	2	n	0.17	1	5	1	5	n	ENSMUSG00000035919.17	Bbs9	chr9	protein_coding	Bardet-Biedl syndrome 9 (human)
novel_NIR_20084	chr9	23212318	23219918	+	23212318	23277488	A3SS	ENSMUST00000071982.7	novel	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.03	2	75	2	75	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	32	0	32	n	0.00	0	7	0	7	n	0.00	0	24	0	24	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000031963.9	Bmper	chr9	protein_coding	BMP-binding endothelial regulator
novel_NIR_20085	chr9	23212318	23285129	+	23212318;23277587	23277488;23285129	ES	ENSMUST00000071982.7	novel	0.00	0	5.0	0	3;7	n	0.33	1	2.0	1	3;1	n	0.02	2	78.5	2	75;82	n	0.00	0	3.0	0	3;3	n	0.21	3	11.5	3	7;16	y	0.06	2	32.0	2	32;32	n	0.19	2	8.5	2	7;10	y	0.05	1	20.5	1	24;17	n	0.00	0	1.5	0	2;1	n	0.00	0	2.0	0	1;3	n	-	-	-	-	-	-	0.00	0	3.0	0	3;3	n	ENSMUSG00000031963.9	Bmper	chr9	protein_coding	BMP-binding endothelial regulator
novel_NIR_20086	chr9	24397025	24413836	-	24397025	24399083	5pMXE	ENSMUST00000115277.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000043067.16	Dpy19l1	chr9	protein_coding	dpy-19-like 1 (C. elegans)
novel_NIR_20087	chr9	25085339	25091591	+	25085339	25086209	3pMXE	ENSMUST00000186170.3	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000100002.3	Gm29642	chr9	lncRNA	predicted gene 29642
novel_NIR_20088	chr9	25085339	25113765	+	25085339	25086209	3pMXE	ENSMUST00000186170.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000100002.3	Gm29642	chr9	lncRNA	predicted gene 29642
novel_NIR_20089	chr9	25085339	25155687	+	25085339	25086209	3pMXE	ENSMUST00000186170.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000100002.3	Gm29642	chr9	lncRNA	predicted gene 29642
novel_NIR_20090	chr9	25176792	25188891	+	25176792	25186527	3pMXE	ENSMUST00000215692.2	novel	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	5	0	5	0	y	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000001833.18	Septin7	chr9	protein_coding	septin 7
novel_NIR_20091	chr9	25176792	25188891	+	25176792	25186591	3pMXE	ENSMUST00000215721.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	5	0	5	0	y	1.00	2	0	2	0	y	0.00	0	3	0	3	n	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000001833.18	Septin7	chr9	protein_coding	septin 7
novel_NIR_20092	chr9	25176792	25188891	+	25176792	25186630	3pMXE	ENSMUST00000214520.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000001833.18	Septin7	chr9	protein_coding	septin 7
novel_NIR_20093	chr9	26901488	26901879	-	26901488	26901875	A5SS	ENSMUST00000120367.8	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031969.17	Acad8	chr9	protein_coding	acyl-Coenzyme A dehydrogenase family, member 8
novel_NIR_20094	chr9	26984098	26985071	+	26984098	26993702	A3SS	ENSMUST00000073127.14	novel	0.25	2	6	2	6	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.11	1	8	1	8	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	ENSMUSG00000035024.17	Ncapd3	chr9	protein_coding	non-SMC condensin II complex, subunit D3
novel_NIR_20095	chr9	30351521	30360388	+	30351521	30374516	A3SS	ENSMUST00000216545.2	novel	0.14	1	6	1	6	n	0.00	0	2	0	2	n	0.29	4	10	4	10	y	0.00	0	2	0	2	n	0.18	2	9	2	9	y	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.75	3	1	3	1	y	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	ENSMUSG00000031993.8	Snx19	chr9	protein_coding	sorting nexin 19
novel_NIR_20096	chr9	30351521	30373567	+	30351521	30374516	A3SS	ENSMUST00000216545.2	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.67	2	1	2	1	y	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	ENSMUSG00000031993.8	Snx19	chr9	protein_coding	sorting nexin 19
novel_NIR_20097	chr9	30973421	30975526	+	30973421	30975529	A3SS	ENSMUST00000216649.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.43	3	4	3	4	y	0.00	0	6	0	6	n	0.60	3	2	3	2	y	0.12	1	7	1	7	n	0.00	0	2	0	2	n	0.50	3	3	3	3	y	0.42	5	7	5	7	y	0.14	1	6	1	6	n	0.57	4	3	4	3	y	ENSMUSG00000047412.17	Zbtb44	chr9	protein_coding	zinc finger and BTB domain containing 44
novel_NIR_20098	chr9	31308433	31309856	+	31308433	31309016	A3SS	ENSMUST00000134528.2	novel	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	16	0	16	n	-	-	-	-	-	-	0.18	2	9	2	9	y	ENSMUSG00000042185.15	Nfrkb	chr9	protein_coding	nuclear factor related to kappa B binding protein
novel_NIR_20099	chr9	31313574	31314313	+	31313574	31314310	A3SS	ENSMUST00000086167.12	novel	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.18	2	9	2	9	y	0.09	1	10	1	10	n	0.20	4	16	4	16	y	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.12	1	7	1	7	n	0.00	0	8	0	8	n	0.12	1	7	1	7	n	0.33	3	6	3	6	y	ENSMUSG00000042185.15	Nfrkb	chr9	protein_coding	nuclear factor related to kappa B binding protein
novel_NIR_20100	chr9	31770339	31770614	-	31770339	31824201	A5SS	ENSMUST00000116615.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032033.12	Barx2	chr9	protein_coding	BarH-like homeobox 2
novel_NIR_20101	chr9	31859771	31871658	-	31859771	31906234	A5SS	ENSMUST00000216368.2	novel	0.64	7	4	7	4	n	0.67	10	5	10	5	n	0.89	8	1	8	1	y	0.50	3	3	3	3	n	0.46	17	20	17	20	n	0.60	3	2	3	2	n	0.65	17	9	17	9	n	0.76	19	6	19	6	n	1.00	2	0	2	0	n	1.00	8	0	8	0	n	0.43	3	4	3	4	y	0.40	2	3	2	3	n	ENSMUSG00000111771.2	Gm47465	chr9	lncRNA	predicted gene, 47465
novel_NIR_20102	chr9	31859771	31916590	-	31859771;31906370	31906234;31916590	ES	ENSMUST00000216368.2	novel	0.12	1	7.0	1	4;10	n	0.14	2	12.0	2	5;19	n	0.14	2	12.5	2	1;24	n	0.00	0	7.5	0	3;12	n	0.13	5	32.5	5	20;45	n	0.00	0	11.5	0	2;21	n	0.00	0	27.0	0	9;45	n	0.00	0	10.0	0	6;14	n	0.00	0	3.5	0	0;7	n	0.00	0	13.0	0	0;26	n	0.48	5	5.5	5	4;7	y	0.00	0	4.5	0	3;6	n	ENSMUSG00000111771.2	Gm47465	chr9	lncRNA	predicted gene, 47465
novel_NIR_20103	chr9	31859771;31871775	31871658;31916590	-	31859771;31906370	31906234;31916590	MXE	ENSMUST00000216368.2	novel	0.33	3.5	7.0	7;0	4;10	n	0.29	5.0	12.0	10;0	5;19	n	0.24	4.0	12.5	8;0	1;24	n	0.21	2.0	7.5	3;1	3;12	n	0.22	9.0	32.5	17;1	20;45	n	0.12	1.5	11.5	3;0	2;21	n	0.26	9.5	27.0	17;2	9;45	y	0.49	9.5	10.0	19;0	6;14	n	0.22	1.0	3.5	2;0	0;7	n	0.24	4.0	13.0	8;0	0;26	n	0.21	1.5	5.5	3;0	4;7	n	0.18	1.0	4.5	2;0	3;6	n	ENSMUSG00000111771.2	Gm47465	chr9	lncRNA	predicted gene, 47465
novel_NIR_20104	chr9	31859771;31871787	31871658;31906234	-	31859771	31906234	cassetteExon	ENSMUST00000216368.2	novel	0.47	3.5	4	7;0	4	n	0.55	6.0	5	10;2	5	y	0.80	4.0	1	8;0	1	n	0.60	4.5	3	3;6	3	y	0.33	10.0	20	17;3	20	y	0.60	3.0	2	3;3	2	y	0.56	11.5	9	17;6	9	y	0.61	9.5	6	19;0	6	n	1.00	1.0	0	2;0	0	n	1.00	4.0	0	8;0	0	n	0.27	1.5	4	3;0	4	n	0.33	1.5	3	2;1	3	n	ENSMUSG00000111771.2	Gm47465	chr9	lncRNA	predicted gene, 47465
novel_NIR_20105	chr9	31859771;31871787	31871658;31916590	-	31859771;31906370	31906234;31916590	MXE	ENSMUST00000216368.2	novel	0.42	5.0	7.0	7;3	4;10	y	0.31	5.5	12.0	10;1	5;19	n	0.24	4.0	12.5	8;0	1;24	n	0.25	2.5	7.5	3;2	3;12	y	0.28	12.5	32.5	17;8	20;45	y	0.12	1.5	11.5	3;0	2;21	n	0.27	10.0	27.0	17;3	9;45	y	0.55	12.0	10.0	19;5	6;14	y	0.30	1.5	3.5	2;1	0;7	n	0.26	4.5	13.0	8;1	0;26	n	0.21	1.5	5.5	3;0	4;7	n	0.18	1.0	4.5	2;0	3;6	n	ENSMUSG00000111771.2	Gm47465	chr9	lncRNA	predicted gene, 47465
novel_NIR_20106	chr9	31859771;31882184	31882120;31906234	-	31859771	31906234	cassetteExon	ENSMUST00000216368.2	novel	0.56	5.0	4	2;8	4	y	0.33	2.5	5	0;5	5	n	0.92	11.5	1	2;21	1	y	0.65	5.5	3	0;11	3	n	0.31	9.0	20	0;18	20	n	0.71	5.0	2	1;9	2	n	0.49	8.5	9	0;17	9	n	0.60	9.0	6	0;18	6	n	1.00	0.5	0	1;0	0	n	1.00	4.0	0	2;6	0	y	0.00	0.0	4	0;0	4	n	0.25	1.0	3	0;2	3	n	ENSMUSG00000111771.2	Gm47465	chr9	lncRNA	predicted gene, 47465
novel_NIR_20107	chr9	31859771;31882184	31882120;31916590	-	31859771;31906370	31906234;31916590	MXE	ENSMUST00000216368.2	novel	0.42	5.0	7.0	2;8	4;10	y	0.00	0.0	12.0	0;0	5;19	n	0.07	1.0	12.5	2;0	1;24	n	0.17	1.5	7.5	0;3	3;12	n	0.00	0.0	32.5	0;0	20;45	n	0.15	2.0	11.5	1;3	2;21	n	0.00	0.0	27.0	0;0	9;45	n	0.00	0.0	10.0	0;0	6;14	n	0.22	1.0	3.5	1;1	0;7	n	0.07	1.0	13.0	2;0	0;26	n	0.00	0.0	5.5	0;0	4;7	n	0.00	0.0	4.5	0;0	3;6	n	ENSMUSG00000111771.2	Gm47465	chr9	lncRNA	predicted gene, 47465
novel_NIR_20108	chr9	31859774	31906234	-	31859771	31906234	A3SS	ENSMUST00000216368.2	novel	0.33	2	4	2	4	y	0.17	1	5	1	5	n	0.75	3	1	3	1	y	0.50	3	3	3	3	y	0.09	2	20	2	20	n	0.00	0	2	0	2	n	0.47	8	9	8	9	y	0.14	1	6	1	6	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.33	2	4	2	4	y	0.25	1	3	1	3	n	ENSMUSG00000111771.2	Gm47465	chr9	lncRNA	predicted gene, 47465
novel_NIR_20109	chr9	31859774	31916590	-	31906370	31916590	A3SS&ES	ENSMUST00000216368.2	novel	0.17	2	10	2	10	y	0.00	0	19	0	19	n	0.00	0	24	0	24	n	0.08	1	12	1	12	n	0.00	0	45	0	45	n	0.05	1	21	1	21	n	0.04	2	45	2	45	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	26	0	26	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	ENSMUSG00000111771.2	Gm47465	chr9	lncRNA	predicted gene, 47465
novel_NIR_20110	chr9	31882184	31906234	-	31859771	31906234	A3SS	ENSMUST00000216368.2	novel	0.67	8	4	8	4	n	0.50	5	5	5	5	y	0.95	21	1	21	1	n	0.79	11	3	11	3	y	0.47	18	20	18	20	y	0.82	9	2	9	2	n	0.65	17	9	17	9	y	0.75	18	6	18	6	y	-	-	-	-	-	-	1.00	6	0	6	0	n	0.00	0	4	0	4	n	0.40	2	3	2	3	y	ENSMUSG00000111771.2	Gm47465	chr9	lncRNA	predicted gene, 47465
novel_NIR_20111	chr9	31882184	31916590	-	31906370	31916590	A3SS&ES	ENSMUST00000216368.2	novel	0.44	8	10	8	10	n	0.00	0	19	0	19	n	0.00	0	24	0	24	n	0.20	3	12	3	12	y	0.00	0	45	0	45	n	0.12	3	21	3	21	n	0.00	0	45	0	45	n	0.00	0	14	0	14	n	0.12	1	7	1	7	n	0.00	0	26	0	26	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	ENSMUSG00000111771.2	Gm47465	chr9	lncRNA	predicted gene, 47465
novel_NIR_20112	chr9	31886205	31906234	-	31859771	31906234	A3SS	ENSMUST00000216368.2	novel	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	20	0	20	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.25	2	6	2	6	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	ENSMUSG00000111771.2	Gm47465	chr9	lncRNA	predicted gene, 47465
novel_NIR_20113	chr9	31916253	31916590	-	31906370	31916590	A3SS	ENSMUST00000216368.2	novel	0.00	0	10	0	10	n	0.00	0	19	0	19	n	0.04	1	24	1	24	n	0.00	0	12	0	12	n	0.02	1	45	1	45	n	0.16	4	21	4	21	y	0.06	3	45	3	45	n	0.12	2	14	2	14	n	0.22	2	7	2	7	y	0.00	0	26	0	26	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	ENSMUSG00000111771.2	Gm47465	chr9	lncRNA	predicted gene, 47465
novel_NIR_20114	chr9	31944028	32040866	+	32027547	32040866	5pMXE	ENSMUST00000174641.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	ENSMUSG00000041444.15	Arhgap32	chr9	protein_coding	Rho GTPase activating protein 32
novel_NIR_20115	chr9	3411451	3412355	+	3411451	3417869	A3SS	ENSMUST00000027027.7	novel	0.60	3	2	3	2	y	0.33	1	2	1	2	n	0.09	1	10	1	10	n	0.00	0	18	0	18	n	0.00	0	18	0	18	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.11	1	8	1	8	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.08	1	12	1	12	n	ENSMUSG00000025898.7	Cwf19l2	chr9	protein_coding	CWF19-like 2, cell cycle control (S. pombe)
novel_NIR_20116	chr9	3431096	3441055	+	3431087	3441055	A5SS	ENSMUST00000027027.7	novel	0.31	4	9	4	9	y	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.00	0	24	0	24	n	0.00	0	7	0	7	n	0.00	0	16	0	16	n	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.00	0	26	0	26	n	0.00	0	9	0	9	n	0.00	0	17	0	17	n	ENSMUSG00000025898.7	Cwf19l2	chr9	protein_coding	CWF19-like 2, cell cycle control (S. pombe)
novel_NIR_20117	chr9	34966945	34967715	-	34966945	34983867	A5SS	ENSMUST00000217542.2	novel	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	5	0	5	0	y	1.00	13	0	13	0	y	1.00	2	0	2	0	y	1.00	9	0	9	0	y	1.00	3	0	3	0	y	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	6	0	6	0	y	ENSMUSG00000032038.8	St3gal4	chr9	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 4
novel_NIR_20118	chr9	34966945	34967715	-	34966945	34987613	A5SS	ENSMUST00000215638.2	novel	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	5	0	5	0	y	1.00	13	0	13	0	y	1.00	2	0	2	0	y	1.00	9	0	9	0	y	1.00	3	0	3	0	y	1.00	5	0	5	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	6	0	6	0	y	ENSMUSG00000032038.8	St3gal4	chr9	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 4
novel_NIR_20119	chr9	34966945	34967715	-	34966945	35010195	A5SS	ENSMUST00000214526.2	novel	0.50	2	2	2	2	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	5	0	5	0	y	1.00	13	0	13	0	y	1.00	2	0	2	0	y	0.90	9	1	9	1	y	0.75	3	1	3	1	y	0.62	5	3	5	3	y	0.43	3	4	3	4	y	0.57	4	3	4	3	y	0.75	6	2	6	2	y	ENSMUSG00000032038.8	St3gal4	chr9	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 4
novel_NIR_20120	chr9	34966945	34967715	-	34966945	35017871	A5SS	ENSMUST00000216557.2	novel	0.67	2	1	2	1	y	0.50	2	2	2	2	y	1.00	4	0	4	0	y	0.71	5	2	5	2	y	0.81	13	3	13	3	y	1.00	2	0	2	0	y	0.64	9	5	9	5	y	0.75	3	1	3	1	y	0.71	5	2	5	2	y	0.60	3	2	3	2	y	1.00	4	0	4	0	y	1.00	6	0	6	0	y	ENSMUSG00000032038.8	St3gal4	chr9	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 4
novel_NIR_20121	chr9	34966945	34969948	-	34966945	34983867	A5SS	ENSMUST00000217542.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032038.8	St3gal4	chr9	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 4
novel_NIR_20122	chr9	34966945	34969948	-	34966945	34987613	A5SS	ENSMUST00000215638.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032038.8	St3gal4	chr9	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 4
novel_NIR_20123	chr9	34966945	34969948	-	34966945	35010195	A5SS	ENSMUST00000214526.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.43	3	4	3	4	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000032038.8	St3gal4	chr9	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 4
novel_NIR_20124	chr9	34966945	34969948	-	34966945	35017871	A5SS	ENSMUST00000216557.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.60	3	2	3	2	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032038.8	St3gal4	chr9	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 4
novel_NIR_20125	chr9	34966945	34974732	-	34966945	34983867	A5SS	ENSMUST00000217542.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032038.8	St3gal4	chr9	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 4
novel_NIR_20126	chr9	34966945	34974732	-	34966945	34987613	A5SS	ENSMUST00000215638.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032038.8	St3gal4	chr9	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 4
novel_NIR_20127	chr9	34966945	34974732	-	34966945	35010195	A5SS	ENSMUST00000214526.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000032038.8	St3gal4	chr9	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 4
novel_NIR_20128	chr9	34966945	34974732	-	34966945	35017871	A5SS	ENSMUST00000216557.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.40	2	3	2	3	y	-	-	-	-	-	-	0.17	1	5	1	5	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032038.8	St3gal4	chr9	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 4
novel_NIR_20129	chr9	34966945	35027315	-	34966945	34983867	5pMXE	ENSMUST00000217542.2	novel	1.00	27	0	27	0	y	1.00	14	0	14	0	y	1.00	17	0	17	0	y	1.00	20	0	20	0	y	1.00	23	0	23	0	y	1.00	17	0	17	0	y	1.00	22	0	22	0	y	1.00	13	0	13	0	y	1.00	12	0	12	0	y	1.00	15	0	15	0	y	1.00	14	0	14	0	y	1.00	25	0	25	0	y	ENSMUSG00000032038.8	St3gal4	chr9	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 4
novel_NIR_20130	chr9	34966945	35027315	-	34966945	34987613	5pMXE	ENSMUST00000215638.2	novel	1.00	27	0	27	0	y	1.00	14	0	14	0	y	1.00	17	0	17	0	y	1.00	20	0	20	0	y	1.00	23	0	23	0	y	1.00	17	0	17	0	y	1.00	22	0	22	0	y	1.00	13	0	13	0	y	1.00	12	0	12	0	y	1.00	15	0	15	0	y	1.00	14	0	14	0	y	1.00	25	0	25	0	y	ENSMUSG00000032038.8	St3gal4	chr9	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 4
novel_NIR_20131	chr9	34966945	35027315	-	34966945	35010195	5pMXE	ENSMUST00000214526.2	novel	0.93	27	2	27	2	y	1.00	14	0	14	0	y	1.00	17	0	17	0	y	1.00	20	0	20	0	y	1.00	23	0	23	0	y	1.00	17	0	17	0	y	0.96	22	1	22	1	y	0.93	13	1	13	1	y	0.80	12	3	12	3	y	0.79	15	4	15	4	y	0.82	14	3	14	3	y	0.93	25	2	25	2	y	ENSMUSG00000032038.8	St3gal4	chr9	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 4
novel_NIR_20132	chr9	34966945	35027315	-	34966945	35017871	5pMXE	ENSMUST00000216557.2	novel	0.96	27	1	27	1	y	0.88	14	2	14	2	y	1.00	17	0	17	0	y	0.91	20	2	20	2	y	0.88	23	3	23	3	y	1.00	17	0	17	0	y	0.81	22	5	22	5	y	0.93	13	1	13	1	y	0.86	12	2	12	2	y	0.88	15	2	15	2	y	1.00	14	0	14	0	y	1.00	25	0	25	0	y	ENSMUSG00000032038.8	St3gal4	chr9	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 4
novel_NIR_20133	chr9	34966945	35027315	-	34966945	35030299	A5SS	ENSMUST00000213526.2	novel	0.38	27	45	27	45	y	0.17	14	70	14	70	y	0.22	17	61	17	61	y	0.23	20	66	20	66	y	0.18	23	105	23	105	y	0.18	17	78	17	78	y	0.22	22	80	22	80	y	0.17	13	63	13	63	y	0.15	12	67	12	67	y	0.20	15	60	15	60	y	0.34	14	27	14	27	y	0.36	25	45	25	45	y	ENSMUSG00000032038.8	St3gal4	chr9	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 4
novel_NIR_20134	chr9	34966945	35027572	-	34966945	34983867	5pMXE	ENSMUST00000217542.2	novel	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000032038.8	St3gal4	chr9	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 4
novel_NIR_20135	chr9	34966945	35027572	-	34966945	34987613	5pMXE	ENSMUST00000215638.2	novel	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000032038.8	St3gal4	chr9	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 4
novel_NIR_20136	chr9	34966945	35027572	-	34966945	35010195	5pMXE	ENSMUST00000214526.2	novel	0.50	2	2	2	2	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.50	2	2	2	2	y	ENSMUSG00000032038.8	St3gal4	chr9	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 4
novel_NIR_20137	chr9	34966945	35027572	-	34966945	35017871	5pMXE	ENSMUST00000216557.2	novel	0.67	2	1	2	1	y	0.60	3	2	3	2	y	1.00	2	0	2	0	y	0.60	3	2	3	2	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.38	3	5	3	5	y	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000032038.8	St3gal4	chr9	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 4
novel_NIR_20138	chr9	34966945	35034449	-	34966945	34983867	5pMXE	ENSMUST00000217542.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032038.8	St3gal4	chr9	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 4
novel_NIR_20139	chr9	34966945	35034449	-	34966945	34987613	5pMXE	ENSMUST00000215638.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032038.8	St3gal4	chr9	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 4
novel_NIR_20140	chr9	34966945	35034449	-	34966945	35010195	5pMXE	ENSMUST00000214526.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000032038.8	St3gal4	chr9	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 4
novel_NIR_20141	chr9	34966945	35034449	-	34966945	35017871	5pMXE	ENSMUST00000216557.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	4	0	4	0	y	0.00	0	2	0	2	n	0.25	1	3	1	3	n	1.00	1	0	1	0	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032038.8	St3gal4	chr9	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 4
novel_NIR_20142	chr9	34966945;35027407	35027315;35027994	-	34966945	35027994	cassetteExon	ENSMUST00000034537.8	novel	0.12	20.0	145	27;13	145	n	0.11	11.5	96	14;9	96	n	0.12	16.5	119	17;16	119	n	0.18	20.0	89	20;20	89	y	0.08	22.0	252	23;21	252	n	0.16	14.5	78	17;12	78	y	0.10	19.0	178	22;16	178	n	0.10	9.5	83	13;6	83	n	0.08	10.0	122	12;8	122	n	0.07	13.5	180	15;12	180	n	0.12	13.5	102	14;13	102	n	0.12	18.5	134	25;12	134	n	ENSMUSG00000032038.8	St3gal4	chr9	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 4
novel_NIR_20143	chr9	35028584	35030299	-	34966945	35030299	A3SS	ENSMUST00000213526.2	novel	0.42	32	45	32	45	y	0.32	33	70	33	70	y	0.26	21	61	21	61	y	0.26	23	66	23	66	y	0.28	41	105	41	105	y	0.26	27	78	27	78	y	0.22	23	80	23	80	y	0.27	23	63	23	63	y	0.40	44	67	44	67	y	0.33	29	60	29	60	y	0.40	18	27	18	27	y	0.18	10	45	10	45	y	ENSMUSG00000032038.8	St3gal4	chr9	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 4
novel_NIR_20144	chr9	35028728	35028825	+	35028728	35028861	A3SS	ENSMUST00000159933.2	novel	0.67	2	1	2	1	y	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	6	0	6	n	ENSMUSG00000070315.13	4930581F22Rik	chr9	lncRNA	RIKEN cDNA 4930581F22 gene
novel_NIR_20145	chr9	35029152	35029506	+	35029152	35029495	A3SS	ENSMUST00000159933.2	novel	0.08	1	11	1	11	n	0.00	0	5	0	5	n	0.00	0	19	0	19	n	0.00	0	12	0	12	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.21	3	11	3	11	y	ENSMUSG00000070315.13	4930581F22Rik	chr9	lncRNA	RIKEN cDNA 4930581F22 gene
novel_NIR_20146	chr9	35029642	35037508	+	35029642	35034897	A3SS&ES	ENSMUST00000093873.9	novel	0.13	7	46	7	46	n	0.03	1	30	1	30	n	0.29	9	22	9	22	y	0.08	3	33	3	33	n	0.11	6	47	6	47	n	0.23	6	20	6	20	y	0.13	7	48	7	48	n	0.26	7	20	7	20	y	0.05	3	53	3	53	n	0.16	7	36	7	36	y	0.12	7	50	7	50	n	0.24	10	32	10	32	y	ENSMUSG00000070315.13	4930581F22Rik	chr9	lncRNA	RIKEN cDNA 4930581F22 gene
novel_NIR_20147	chr9	35029642	35037508	+	35029642	35037512	A3SS	ENSMUST00000161136.2	novel	1.00	7	0	7	0	y	1.00	1	0	1	0	n	1.00	9	0	9	0	y	0.60	3	2	3	2	y	1.00	6	0	6	0	y	1.00	6	0	6	0	y	1.00	7	0	7	0	y	1.00	7	0	7	0	y	1.00	3	0	3	0	y	1.00	7	0	7	0	y	1.00	7	0	7	0	y	1.00	10	0	10	0	y	ENSMUSG00000070315.13	4930581F22Rik	chr9	lncRNA	RIKEN cDNA 4930581F22 gene
novel_NIR_20148	chr9	35029642	35037508	+	35029642;35034990	35034897;35037508	ES	ENSMUST00000161823.2	novel	0.14	7	42.5	7	46;39	n	0.03	1	32.0	1	30;34	n	0.30	9	21.0	9	22;20	y	0.09	3	30.0	3	33;27	n	0.11	6	47.5	6	47;48	n	0.21	6	22.0	6	20;24	y	0.14	7	42.0	7	48;36	n	0.29	7	17.5	7	20;15	y	0.07	3	43.0	3	53;33	n	0.17	7	35.0	7	36;34	y	0.17	7	34.5	7	50;19	y	0.21	10	37.0	10	32;42	y	ENSMUSG00000070315.13	4930581F22Rik	chr9	lncRNA	RIKEN cDNA 4930581F22 gene
novel_NIR_20149	chr9	35029642	35041128	+	35029642	35037512	3pMXE	ENSMUST00000161136.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000070315.13	4930581F22Rik	chr9	lncRNA	RIKEN cDNA 4930581F22 gene
novel_NIR_20150	chr9	35034990	35037200	+	35034990	35040075	A3SS	ENSMUST00000093873.9	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000070315.13	4930581F22Rik	chr9	lncRNA	RIKEN cDNA 4930581F22 gene
novel_NIR_20151	chr9	35034990	35037512	+	35029642	35037512	A5SS	ENSMUST00000161136.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000070315.13	4930581F22Rik	chr9	lncRNA	RIKEN cDNA 4930581F22 gene
novel_NIR_20152	chr9	35034990	35037512	+	35034990	35040075	A3SS	ENSMUST00000093873.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000070315.13	4930581F22Rik	chr9	lncRNA	RIKEN cDNA 4930581F22 gene
novel_NIR_20153	chr9	35034990	35037630	+	35034990	35040075	A3SS	ENSMUST00000093873.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000070315.13	4930581F22Rik	chr9	lncRNA	RIKEN cDNA 4930581F22 gene
novel_NIR_20154	chr9	35036140	35037207	-	35036140	35036463	A5SS&ES	ENSMUST00000119847.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000032040.16	Dcps	chr9	protein_coding	decapping enzyme, scavenger
novel_NIR_20155	chr9	35039421	35040075	+	35034990	35040075	A5SS	ENSMUST00000093873.9	novel	1.00	11	0	11	0	y	1.00	18	0	18	0	y	1.00	24	0	24	0	y	1.00	14	0	14	0	y	1.00	23	0	23	0	y	1.00	13	0	13	0	y	1.00	21	0	21	0	y	1.00	10	0	10	0	y	0.88	14	2	14	2	y	1.00	29	0	29	0	y	1.00	16	0	16	0	y	1.00	34	0	34	0	y	ENSMUSG00000070315.13	4930581F22Rik	chr9	lncRNA	RIKEN cDNA 4930581F22 gene
novel_NIR_20156	chr9	35101525	35102536	+	35100401	35102536	A5SS	ENSMUST00000214606.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000110774.2	Gm39318	chr9	lncRNA	predicted gene, 39318
novel_NIR_20157	chr9	35102619	35104634	+	35102619	35104523	A3SS	ENSMUST00000214606.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000110774.2	Gm39318	chr9	lncRNA	predicted gene, 39318
novel_NIR_20158	chr9	35102992	35103208	-	35102992	35110517	A5SS	ENSMUST00000175765.8	novel	0.20	2	8	2	8	y	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.00	0	27	0	27	n	0.00	0	22	0	22	n	0.05	1	19	1	19	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.09	1	10	1	10	n	0.00	0	9	0	9	n	0.00	0	24	0	24	n	ENSMUSG00000032041.16	Tirap	chr9	protein_coding	toll-interleukin 1 receptor (TIR) domain-containing adaptor protein
novel_NIR_20159	chr9	35102992	35103208	-	35102992	35111153	A5SS	ENSMUST00000176021.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032041.16	Tirap	chr9	protein_coding	toll-interleukin 1 receptor (TIR) domain-containing adaptor protein
novel_NIR_20160	chr9	35116035	35116601	-	35116437	35116601	A3SS	ENSMUST00000043805.15	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000039048.16	Foxred1	chr9	protein_coding	FAD-dependent oxidoreductase domain containing 1
novel_NIR_20161	chr9	35117595	35118782	-	35117595	35120334	A5SS	ENSMUST00000142595.8	novel	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	1	0	1	0	n	ENSMUSG00000039048.16	Foxred1	chr9	protein_coding	FAD-dependent oxidoreductase domain containing 1
novel_NIR_20162	chr9	35121461	35121741	-	35121461	35122041	A5SS	ENSMUST00000154691.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000039048.16	Foxred1	chr9	protein_coding	FAD-dependent oxidoreductase domain containing 1
novel_NIR_20163	chr9	35121461	35123129	-	35121461	35122041	5pMXE	ENSMUST00000154691.8	novel	1.00	2	0	2	0	y	1.00	10	0	10	0	y	1.00	8	0	8	0	y	1.00	10	0	10	0	y	0.64	9	5	9	5	y	0.71	5	2	5	2	y	1.00	1	0	1	0	n	0.67	4	2	4	2	y	0.50	3	3	3	3	y	0.67	2	1	2	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000039048.16	Foxred1	chr9	protein_coding	FAD-dependent oxidoreductase domain containing 1
novel_NIR_20164	chr9	35121461	35123129	-	35121461	35122103	5pMXE	ENSMUST00000130072.8	novel	0.05	2	37	2	37	n	0.28	10	26	10	26	y	0.09	8	84	8	84	n	0.16	10	51	10	51	y	0.12	9	69	9	69	n	0.10	5	46	5	46	n	0.02	1	48	1	48	n	0.06	4	60	4	60	n	0.07	3	40	3	40	n	0.03	2	73	2	73	n	0.02	1	41	1	41	n	0.00	0	51	0	51	n	ENSMUSG00000039048.16	Foxred1	chr9	protein_coding	FAD-dependent oxidoreductase domain containing 1
novel_NIR_20165	chr9	35122689	35123288	+	35111509	35123288	A5SS	ENSMUST00000138287.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032042.12	Srpr	chr9	protein_coding	signal recognition particle receptor ('docking protein')
novel_NIR_20166	chr9	35129281	35132676	-	35129284	35132676	A3SS	ENSMUST00000063782.12	novel	0.23	6	20	6	20	y	0.25	6	18	6	18	y	0.09	3	32	3	32	n	0.18	4	18	4	18	y	0.08	3	35	3	35	n	0.13	2	13	2	13	n	0.22	8	28	8	28	y	0.00	0	9	0	9	n	0.06	1	15	1	15	n	0.23	8	27	8	27	y	0.11	2	16	2	16	n	0.19	3	13	3	13	y	ENSMUSG00000050471.18	Fam118b	chr9	protein_coding	family with sequence similarity 118, member B
novel_NIR_20167	chr9	35138687	35179019	-	35146779	35179019	A3SS&ES	ENSMUST00000217306.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000050471.18	Fam118b	chr9	protein_coding	family with sequence similarity 118, member B
novel_NIR_20168	chr9	35138687	35179019	-	35156002	35179019	A3SS&ES	ENSMUST00000063782.12	novel	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	19	0	19	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.20	2	8	2	8	y	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	ENSMUSG00000050471.18	Fam118b	chr9	protein_coding	family with sequence similarity 118, member B
novel_NIR_20169	chr9	35138687	35179019	-	35178405	35179019	3pMXE	ENSMUST00000125124.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000050471.18	Fam118b	chr9	protein_coding	family with sequence similarity 118, member B
novel_NIR_20170	chr9	35403220	35409477	+	35403220	35414456	A3SS	ENSMUST00000119129.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	ENSMUSG00000038119.16	Cdon	chr9	protein_coding	cell adhesion molecule-related/down-regulated by oncogenes
novel_NIR_20171	chr9	35403220	35409504	+	35403220	35414456	A3SS	ENSMUST00000119129.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000038119.16	Cdon	chr9	protein_coding	cell adhesion molecule-related/down-regulated by oncogenes
novel_NIR_20172	chr9	36625156	36627722	-	36625156;36625829	36625721;36627722	ES	ENSMUST00000172702.9	novel	0.00	0	0.5	0	1;0	n	0.00	0	1.5	0	3;0	n	0.00	0	3.0	0	1;5	n	0.00	0	2.0	0	0;4	n	0.00	0	3.0	0	2;4	n	0.00	0	1.5	0	1;2	n	-	-	-	-	-	-	0.00	0	2.0	0	1;3	n	0.00	0	0.5	0	0;1	n	0.00	0	0.5	0	1;0	n	0.00	0	1.5	0	3;0	n	0.80	2	0.5	2	1;0	y	ENSMUSG00000032113.17	Chek1	chr9	protein_coding	checkpoint kinase 1
novel_NIR_20173	chr9	36666192	36668693	-	36666192	36674633	A5SS	ENSMUST00000217599.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032116.19	Stt3a	chr9	protein_coding	STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)
novel_NIR_20174	chr9	36701179	36704536	-	36699549	36704536	A3SS	ENSMUST00000183360.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.77	10	3	10	3	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000062762.18	Ei24	chr9	protein_coding	etoposide induced 2.4 mRNA
novel_NIR_20175	chr9	36701211	36704536	-	36699549	36704536	A3SS	ENSMUST00000183360.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.60	3	2	3	2	y	1.00	6	0	6	0	y	0.00	0	1	0	1	n	1.00	6	0	6	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000062762.18	Ei24	chr9	protein_coding	etoposide induced 2.4 mRNA
novel_NIR_20176	chr9	36704645	36708020	-	36704645	36708255	A5SS	ENSMUST00000184395.9	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000062762.18	Ei24	chr9	protein_coding	etoposide induced 2.4 mRNA
novel_NIR_20177	chr9	36704645	36708553	-	36704645	36708255	5pMXE	ENSMUST00000184395.9	novel	0.50	4	4	4	4	y	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.86	6	1	6	1	y	0.67	8	4	8	4	y	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.80	4	1	4	1	y	0.50	2	2	2	2	y	0.67	8	4	8	4	y	1.00	2	0	2	0	y	0.60	3	2	3	2	y	ENSMUSG00000062762.18	Ei24	chr9	protein_coding	etoposide induced 2.4 mRNA
novel_NIR_20178	chr9	36704645	36708553	-	36704645	36708300	5pMXE	ENSMUST00000239021.2	novel	0.11	4	33	4	33	n	0.00	0	12	0	12	n	0.11	2	16	2	16	n	0.26	6	17	6	17	y	0.19	8	35	8	35	y	0.00	0	4	0	4	n	0.03	1	32	1	32	n	0.22	4	14	4	14	y	0.17	2	10	2	10	y	0.22	8	29	8	29	y	0.12	2	15	2	15	n	0.15	3	17	3	17	y	ENSMUSG00000062762.18	Ei24	chr9	protein_coding	etoposide induced 2.4 mRNA
novel_NIR_20179	chr9	37220552	37222614	-	37215701	37222614	A3SS	ENSMUST00000239439.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000034303.9	Ccdc15	chr9	protein_coding	coiled-coil domain containing 15
novel_NIR_20180	chr9	37401129	37430023	+	37401129	37402680	3pMXE	ENSMUST00000211224.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000042138.10	Msantd2	chr9	protein_coding	Myb/SANT-like DNA-binding domain containing 2
novel_NIR_20181	chr9	37401129	37430023	+	37401129;37428768	37428513;37430023	ES	ENSMUST00000239459.2	novel	0.00	0	6.5	0	0;13	n	0.00	0	11.5	0	0;23	n	0.15	2	11.5	2	0;23	y	0.00	0	8.5	0	0;17	n	0.10	1	9.5	1	2;17	n	0.00	0	3.0	0	0;6	n	0.00	0	9.5	0	1;18	n	0.00	0	5.0	0	0;10	n	0.00	0	7.5	0	0;15	n	0.00	0	9.0	0	1;17	n	0.00	0	10.0	0	1;19	n	0.00	0	16.0	0	0;32	n	ENSMUSG00000042138.10	Msantd2	chr9	protein_coding	Myb/SANT-like DNA-binding domain containing 2
novel_NIR_20182	chr9	38629683	38633570	+	38629683	38633669	A3SS	ENSMUST00000118144.8	novel	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.00	0	6	0	6	n	ENSMUSG00000023186.15	Vwa5a	chr9	protein_coding	von Willebrand factor A domain containing 5A
novel_NIR_20183	chr9	40685781	40692402	+	40685781	40692409	A3SS	ENSMUST00000034522.8	novel	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	ENSMUSG00000032024.11	Clmp	chr9	protein_coding	CXADR-like membrane protein
novel_NIR_20184	chr9	40712644	40713228	+	40712644	40713285	A3SS	ENSMUST00000117870.9	novel	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.40	8	12	8	12	y	1.00	52	0	52	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	35	0	35	n	0.37	7	12	7	12	y	0.00	0	10	0	10	n	0.00	0	17	0	17	n	0.00	0	12	0	12	n	0.57	21	16	21	16	y	ENSMUSG00000015656.18	Hspa8	chr9	protein_coding	heat shock protein 8
novel_NIR_20185	chr9	40713919	40714086	+	40713919	40714092	A3SS	ENSMUST00000117557.8	novel	0.37	13	22	13	22	y	1.00	15	0	15	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	21	0	21	n	0.00	0	6	0	6	n	0.00	0	22	0	22	n	0.00	0	10	0	10	n	-	-	-	-	-	-	1.00	8	0	8	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000015656.18	Hspa8	chr9	protein_coding	heat shock protein 8
novel_NIR_20186	chr9	40715991	40716235	+	40715991	40721239	A3SS	ENSMUST00000215526.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	5	0	5	0	y	1.00	130	0	130	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000015656.18	Hspa8	chr9	protein_coding	heat shock protein 8
novel_NIR_20187	chr9	42171195	42171788	-	42171195	42175502	A5SS	ENSMUST00000217513.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000032018.15	Sc5d	chr9	protein_coding	sterol-C5-desaturase
novel_NIR_20188	chr9	42173427	42175372	-	42173427	42175418	A5SS	ENSMUST00000169609.2	novel	0.09	2	21	2	21	n	0.00	0	9	0	9	n	0.18	3	14	3	14	y	0.00	0	31	0	31	n	0.15	8	44	8	44	y	0.22	2	7	2	7	y	0.00	0	37	0	37	n	0.00	0	8	0	8	n	0.05	3	52	3	52	n	0.10	7	61	7	61	n	0.12	8	59	8	59	n	0.03	2	62	2	62	n	ENSMUSG00000032018.15	Sc5d	chr9	protein_coding	sterol-C5-desaturase
novel_NIR_20189	chr9	42173445	42175502	-	42171195	42175502	A3SS	ENSMUST00000217513.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.33	1	2	1	2	n	0.80	4	1	4	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032018.15	Sc5d	chr9	protein_coding	sterol-C5-desaturase
novel_NIR_20190	chr9	42354371	42361220	-	42354371;42355884	42355703;42361220	ES	ENSMUST00000125995.8	novel	0.03	1	34.5	1	43;26	n	0.15	4	23.0	4	23;23	y	0.00	0	52.0	0	48;56	n	0.02	1	44.0	1	44;44	n	0.00	0	58.0	0	60;56	n	0.00	0	35.0	0	33;37	n	0.06	4	58.0	4	68;48	n	0.00	0	23.5	0	29;18	n	0.03	1	39.0	1	46;32	n	0.12	8	57.5	8	63;52	n	0.00	0	41.5	0	43;40	n	0.14	8	49.0	8	48;50	n	ENSMUSG00000037287.16	Tbcel	chr9	protein_coding	tubulin folding cofactor E-like
novel_NIR_20191	chr9	42363058	42375064	-	42363058	42368854	5pMXE	ENSMUST00000125995.8	novel	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	15	0	15	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	ENSMUSG00000037287.16	Tbcel	chr9	protein_coding	tubulin folding cofactor E-like
novel_NIR_20192	chr9	42363058	42375064	-	42363058	42372570	5pMXE	ENSMUST00000066179.14	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037287.16	Tbcel	chr9	protein_coding	tubulin folding cofactor E-like
novel_NIR_20193	chr9	42363058	42375064	-	42363058	42383314	A5SS	ENSMUST00000128959.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037287.16	Tbcel	chr9	protein_coding	tubulin folding cofactor E-like
novel_NIR_20194	chr9	42363058	42375064	-	42363058	42383362	A5SS	ENSMUST00000066148.12	novel	0.29	2	5	2	5	y	0.00	0	9	0	9	n	0.00	0	25	0	25	n	0.00	0	24	0	24	n	0.00	0	32	0	32	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	15	0	15	n	0.03	1	28	1	28	n	0.00	0	13	0	13	n	0.00	0	23	0	23	n	ENSMUSG00000037287.16	Tbcel	chr9	protein_coding	tubulin folding cofactor E-like
novel_NIR_20195	chr9	42363058	42375064	-	42363058	42383476	A5SS	ENSMUST00000138506.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037287.16	Tbcel	chr9	protein_coding	tubulin folding cofactor E-like
novel_NIR_20196	chr9	42363058	42375064	-	42363058	42419002	A5SS	ENSMUST00000134374.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000037287.16	Tbcel	chr9	protein_coding	tubulin folding cofactor E-like
novel_NIR_20197	chr9	42363058	42383190	-	42363058	42368854	5pMXE	ENSMUST00000125995.8	novel	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	15	0	15	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.12	1	7	1	7	n	0.00	0	4	0	4	n	0.22	2	7	2	7	y	ENSMUSG00000037287.16	Tbcel	chr9	protein_coding	tubulin folding cofactor E-like
novel_NIR_20198	chr9	42363058	42383190	-	42363058	42372570	5pMXE	ENSMUST00000066179.14	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000037287.16	Tbcel	chr9	protein_coding	tubulin folding cofactor E-like
novel_NIR_20199	chr9	42363058	42383190	-	42363058	42383314	A5SS	ENSMUST00000128959.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000037287.16	Tbcel	chr9	protein_coding	tubulin folding cofactor E-like
novel_NIR_20200	chr9	42363058	42383190	-	42363058	42383476	A5SS	ENSMUST00000138506.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000037287.16	Tbcel	chr9	protein_coding	tubulin folding cofactor E-like
novel_NIR_20201	chr9	42363058	42383190	-	42363058	42419002	A5SS	ENSMUST00000134374.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000037287.16	Tbcel	chr9	protein_coding	tubulin folding cofactor E-like
novel_NIR_20202	chr9	4302631	4308728	-	4302631	4308694	A5SS	ENSMUST00000212897.2	novel	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.50	2	2	2	2	y	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.71	5	2	5	2	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.43	3	4	3	4	y	ENSMUSG00000025894.12	Aasdhppt	chr9	protein_coding	aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase
novel_NIR_20203	chr9	4302631	4308734	-	4302631	4308694	A5SS	ENSMUST00000212897.2	novel	0.50	3	3	3	3	y	0.38	3	5	3	5	y	0.80	8	2	8	2	y	0.40	4	6	4	6	y	0.60	6	4	6	4	y	0.73	8	3	8	3	y	0.60	3	2	3	2	y	0.33	1	2	1	2	n	0.80	4	1	4	1	y	0.62	5	3	5	3	y	0.00	0	2	0	2	n	0.67	8	4	8	4	y	ENSMUSG00000025894.12	Aasdhppt	chr9	protein_coding	aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase
novel_NIR_20204	chr9	4308919	4309167	-	4308919	4309288	A5SS	ENSMUST00000212066.2	novel	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	16	0	16	n	0.23	3	10	3	10	y	0.16	3	16	3	16	y	0.00	0	8	0	8	n	0.00	0	24	0	24	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	ENSMUSG00000025894.12	Aasdhppt	chr9	protein_coding	aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase
novel_NIR_20205	chr9	4308919	4309292	-	4308919	4309288	A5SS	ENSMUST00000212066.2	novel	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.11	2	16	2	16	n	0.00	0	10	0	10	n	0.06	1	16	1	16	n	0.00	0	8	0	8	n	0.00	0	24	0	24	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.20	3	12	3	12	y	0.00	0	8	0	8	n	0.00	0	7	0	7	n	ENSMUSG00000025894.12	Aasdhppt	chr9	protein_coding	aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase
novel_NIR_20206	chr9	4309934	4313697	+	4309934	4313702	A3SS	ENSMUST00000212221.2	novel	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.43	3	4	3	4	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	15	0	15	n	ENSMUSG00000025893.9	Kbtbd3	chr9	protein_coding	kelch repeat and BTB (POZ) domain containing 3
novel_NIR_20207	chr9	4309934	4313697	+	4309934	4316827	A3SS	ENSMUST00000049648.9	novel	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.50	3	3	3	3	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	ENSMUSG00000025893.9	Kbtbd3	chr9	protein_coding	kelch repeat and BTB (POZ) domain containing 3
novel_NIR_20208	chr9	4312259	4313702	+	4309934	4313702	A5SS	ENSMUST00000212221.2	novel	0.22	2	7	2	7	y	0.50	3	3	3	3	y	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.43	3	4	3	4	y	0.60	9	6	9	6	y	1.00	3	0	3	0	y	0.12	2	15	2	15	n	ENSMUSG00000025893.9	Kbtbd3	chr9	protein_coding	kelch repeat and BTB (POZ) domain containing 3
novel_NIR_20209	chr9	43175765	43176613	+	43171208	43176613	A5SS	ENSMUST00000210802.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000095385.4	D630033O11Rik	chr9	lncRNA	RIKEN cDNA D630033O11 gene
novel_NIR_20210	chr9	43175765	43176613	+	43171356	43176613	A5SS	ENSMUST00000179013.4	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	5	0	5	n	0.80	4	1	4	1	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000095385.4	D630033O11Rik	chr9	lncRNA	RIKEN cDNA D630033O11 gene
novel_NIR_20211	chr9	43175765	43176613	+	43175759	43176613	A5SS	ENSMUST00000210588.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000095385.4	D630033O11Rik	chr9	lncRNA	RIKEN cDNA D630033O11 gene
novel_NIR_20212	chr9	43650955	43654393	-	43650955	43656613	A5SS	ENSMUST00000216455.2	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000111334.2	Gm30015	chr9	lncRNA	predicted gene, 30015
novel_NIR_20213	chr9	43650955	43654654	-	43650955	43656613	A5SS	ENSMUST00000216455.2	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000111334.2	Gm30015	chr9	lncRNA	predicted gene, 30015
novel_NIR_20214	chr9	43996632	43998444	+	43996632	44000438	A3SS	ENSMUST00000176416.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032010.16	Usp2	chr9	protein_coding	ubiquitin specific peptidase 2
novel_NIR_20215	chr9	44209923	44210170	-	44209708	44210170	A3SS	ENSMUST00000216508.2	novel	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	17	0	17	n	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.33	2	4	2	4	y	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	ENSMUSG00000032119.6	Hinfp	chr9	protein_coding	histone H4 transcription factor
novel_NIR_20216	chr9	44237331	44238443	+	44237492	44238443	A5SS	ENSMUST00000215248.2	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.43	3	4	3	4	y	1.00	2	0	2	0	y	-	-	-	-	-	-	0.12	1	7	1	7	n	1.00	1	0	1	0	n	0.50	5	5	5	5	y	0.67	6	3	6	3	y	0.00	0	3	0	3	n	0.29	2	5	2	5	y	ENSMUSG00000032123.6	Dpagt1	chr9	protein_coding	dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)
novel_NIR_20217	chr9	44237331	44238443	+	44238116	44238443	5pMXE	ENSMUST00000213461.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.38	3	5	3	5	y	0.25	2	6	2	6	y	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.33	1	2	1	2	n	0.62	5	3	5	3	y	0.46	6	7	6	7	y	0.00	0	1	0	1	n	0.67	2	1	2	1	y	ENSMUSG00000032123.6	Dpagt1	chr9	protein_coding	dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)
novel_NIR_20218	chr9	44238502	44239266	+	44238502	44239250	A3SS	ENSMUST00000215050.2	novel	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.33	1	2	1	2	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.50	1	1	1	1	n	0.00	0	10	0	10	n	1.00	1	0	1	0	n	0.60	3	2	3	2	y	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.00	0	8	0	8	n	ENSMUSG00000032123.6	Dpagt1	chr9	protein_coding	dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)
novel_NIR_20219	chr9	44240434	44243201	+	44240434	44240709	3pMXE	ENSMUST00000217225.2	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000032123.6	Dpagt1	chr9	protein_coding	dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)
novel_NIR_20220	chr9	44309466	44309565	+	44308288	44309565	A5SS	ENSMUST00000215420.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000032114.10	Slc37a4	chr9	protein_coding	solute carrier family 37 (glucose-6-phosphate transporter), member 4
novel_NIR_20221	chr9	44309466	44309565	+	44308743	44309565	A5SS	ENSMUST00000213388.2	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.20	2	8	2	8	y	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.00	0	8	0	8	n	ENSMUSG00000032114.10	Slc37a4	chr9	protein_coding	solute carrier family 37 (glucose-6-phosphate transporter), member 4
novel_NIR_20222	chr9	44309466	44309565	+	44308770	44309565	A5SS	ENSMUST00000215121.2	novel	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.11	2	17	2	17	n	0.00	0	9	0	9	n	0.12	2	15	2	15	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	24	0	24	n	0.15	2	11	2	11	y	0.00	0	10	0	10	n	ENSMUSG00000032114.10	Slc37a4	chr9	protein_coding	solute carrier family 37 (glucose-6-phosphate transporter), member 4
novel_NIR_20223	chr9	44309918	44310322	+	44309918	44310515	A3SS	ENSMUST00000215001.2	novel	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.00	0	7	0	7	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.22	2	7	2	7	y	ENSMUSG00000032114.10	Slc37a4	chr9	protein_coding	solute carrier family 37 (glucose-6-phosphate transporter), member 4
novel_NIR_20224	chr9	44309918	44310562	+	44309918	44310515	A3SS	ENSMUST00000215001.2	novel	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.12	1	7	1	7	n	0.00	0	3	0	3	n	0.62	5	3	5	3	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	ENSMUSG00000032114.10	Slc37a4	chr9	protein_coding	solute carrier family 37 (glucose-6-phosphate transporter), member 4
novel_NIR_20225	chr9	44322077	44323609	-	44322077	44323750	A5SS	ENSMUST00000053286.9	novel	0.09	3	32	3	32	n	0.03	1	36	1	36	n	0.10	3	26	3	26	n	0.00	0	34	0	34	n	0.05	2	35	2	35	n	0.00	0	8	0	8	n	0.00	0	39	0	39	n	0.32	7	15	7	15	y	0.00	0	25	0	25	n	0.00	0	31	0	31	n	0.03	1	32	1	32	n	0.00	0	34	0	34	n	ENSMUSG00000043923.9	Ccdc84	chr9	protein_coding	coiled-coil domain containing 84
novel_NIR_20226	chr9	44394783	44410745	+	44394783	44412042	A3SS	ENSMUST00000220303.2	novel	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	6	0	6	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	ENSMUSG00000063382.7	Bcl9l	chr9	protein_coding	B cell CLL/lymphoma 9-like
novel_NIR_20227	chr9	44394783	44410745	+	44394783;44401008	44400952;44410745	ES	ENSMUST00000217898.2	novel	0.09	1	10.5	1	7;14	n	0.00	0	10.5	0	9;12	n	0.00	0	21.0	0	22;20	n	0.00	0	20.0	0	13;27	n	0.00	0	32.0	0	32;32	n	0.00	0	14.0	0	10;18	n	0.00	0	16.0	0	14;18	n	0.00	0	20.0	0	12;28	n	0.15	2	11.0	2	8;14	y	0.00	0	23.5	0	21;26	n	0.08	1	12.0	1	13;11	n	0.00	0	14.0	0	15;13	n	ENSMUSG00000063382.7	Bcl9l	chr9	protein_coding	B cell CLL/lymphoma 9-like
novel_NIR_20228	chr9	44394783	44410745	+	44409856	44410745	5pMXE	ENSMUST00000220292.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000063382.7	Bcl9l	chr9	protein_coding	B cell CLL/lymphoma 9-like
novel_NIR_20229	chr9	44394783	44410745	+	44410570	44410745	5pMXE	ENSMUST00000074989.7	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000063382.7	Bcl9l	chr9	protein_coding	B cell CLL/lymphoma 9-like
novel_NIR_20230	chr9	44395401	44400952	+	44398583	44400952	5pMXE	ENSMUST00000218183.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	1.00	1	0	1	0	n	0.33	2	4	2	4	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000063382.7	Bcl9l	chr9	protein_coding	B cell CLL/lymphoma 9-like
novel_NIR_20231	chr9	44397945	44400952	+	44398583	44400952	5pMXE	ENSMUST00000218183.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000063382.7	Bcl9l	chr9	protein_coding	B cell CLL/lymphoma 9-like
novel_NIR_20232	chr9	44516042	44518420	+	44516249	44518420	5pMXE	ENSMUST00000217034.2	novel	0.29	2	5	2	5	y	0.00	0	9	0	9	n	0.40	10	15	10	15	y	0.29	6	15	6	15	y	0.12	4	28	4	28	n	0.00	0	14	0	14	n	0.21	3	11	3	11	y	0.06	2	30	2	30	n	0.13	2	13	2	13	n	0.00	0	16	0	16	n	0.15	2	11	2	11	y	0.12	3	22	3	22	n	ENSMUSG00000032097.11	Ddx6	chr9	protein_coding	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
novel_NIR_20233	chr9	44516042	44518420	+	44516281	44518420	5pMXE	ENSMUST00000170489.2	novel	0.33	2	4	2	4	y	0.00	0	5	0	5	n	0.62	10	6	10	6	y	0.75	6	2	6	2	y	0.31	4	9	4	9	y	0.00	0	7	0	7	n	0.60	3	2	3	2	y	0.22	2	7	2	7	y	0.40	2	3	2	3	y	0.00	0	5	0	5	n	0.22	2	7	2	7	y	0.23	3	10	3	10	y	ENSMUSG00000032097.11	Ddx6	chr9	protein_coding	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
novel_NIR_20234	chr9	44516224	44518420	+	44516281	44518420	A5SS	ENSMUST00000170489.2	novel	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.14	1	6	1	6	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.12	1	7	1	7	n	0.23	3	10	3	10	y	ENSMUSG00000032097.11	Ddx6	chr9	protein_coding	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
novel_NIR_20235	chr9	44516528	44518420	+	44516281	44518420	A5SS	ENSMUST00000170489.2	novel	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.14	1	6	1	6	n	0.00	0	2	0	2	n	0.18	2	9	2	9	y	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	ENSMUSG00000032097.11	Ddx6	chr9	protein_coding	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
novel_NIR_20236	chr9	44518334	44518420	+	44516249	44518420	A5SS	ENSMUST00000217034.2	novel	0.29	2	5	2	5	y	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.00	0	15	0	15	n	0.00	0	28	0	28	n	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.00	0	30	0	30	n	0.00	0	13	0	13	n	0.06	1	16	1	16	n	0.00	0	11	0	11	n	0.04	1	22	1	22	n	ENSMUSG00000032097.11	Ddx6	chr9	protein_coding	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
novel_NIR_20237	chr9	44518334	44518420	+	44516281	44518420	A5SS	ENSMUST00000170489.2	novel	0.33	2	4	2	4	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.00	0	7	0	7	n	0.09	1	10	1	10	n	ENSMUSG00000032097.11	Ddx6	chr9	protein_coding	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
novel_NIR_20238	chr9	44582098	44583439	-	44582570	44583439	A3SS	ENSMUST00000213859.2	novel	0.07	3	39	3	39	n	0.09	3	30	3	30	n	0.18	12	56	12	56	y	0.07	3	39	3	39	n	0.07	9	116	9	116	n	0.01	1	75	1	75	n	0.00	0	37	0	37	n	0.06	6	89	6	89	n	0.09	2	20	2	20	n	0.00	0	29	0	29	n	0.11	7	54	7	54	n	0.05	1	18	1	18	n	ENSMUSG00000110755.2	BC049987	chr9	lncRNA	cDNA sequence BC049987
novel_NIR_20239	chr9	44663559	44668417	-	44667380	44668417	3pMXE	ENSMUST00000125164.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000032096.17	Arcn1	chr9	protein_coding	archain 1
novel_NIR_20240	chr9	44698201	44701188	+	44698201	44698456	3pMXE	ENSMUST00000142586.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000002031.14	Ift46	chr9	protein_coding	intraflagellar transport 46
novel_NIR_20241	chr9	44747533	44747848	-	44747536	44747848	A3SS	ENSMUST00000114689.8	novel	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.50	2	2	2	2	y	0.00	0	11	0	11	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.10	1	9	1	9	n	ENSMUSG00000002028.14	Kmt2a	chr9	protein_coding	lysine (K)-specific methyltransferase 2A
novel_NIR_20242	chr9	44854119	44856103	-	44852584	44856103	A3SS	ENSMUST00000154287.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000059890.17	Ube4a	chr9	protein_coding	ubiquitination factor E4A
novel_NIR_20243	chr9	44855141	44856103	-	44852584	44856103	A3SS	ENSMUST00000154287.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.60	3	2	3	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000059890.17	Ube4a	chr9	protein_coding	ubiquitination factor E4A
novel_NIR_20244	chr9	44864413	44874662	-	44871437	44874662	A3SS&ES	ENSMUST00000145657.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000059890.17	Ube4a	chr9	protein_coding	ubiquitination factor E4A
novel_NIR_20245	chr9	44874730	44874838	-	44874730	44876771	A5SS	ENSMUST00000213890.2	novel	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000059890.17	Ube4a	chr9	protein_coding	ubiquitination factor E4A
novel_NIR_20246	chr9	44951880	44953909	+	44951880	44953336	A3SS&ES	ENSMUST00000215886.2	novel	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.10	1	9	1	9	n	0.06	1	17	1	17	n	0.00	0	4	0	4	n	0.50	3	3	3	3	y	0.06	1	15	1	15	n	0.00	0	1	0	1	n	0.16	3	16	3	16	y	0.00	0	9	0	9	n	0.00	0	1	0	1	n	ENSMUSG00000032092.6	Mpzl2	chr9	protein_coding	myelin protein zero-like 2
novel_NIR_20247	chr9	44951880	44953909	+	44951880	44954998	A3SS	ENSMUST00000217097.2	novel	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.11	1	8	1	8	n	0.07	1	13	1	13	n	0.00	0	9	0	9	n	0.18	3	14	3	14	y	0.08	1	12	1	12	n	0.00	0	5	0	5	n	0.13	3	20	3	20	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	ENSMUSG00000032092.6	Mpzl2	chr9	protein_coding	myelin protein zero-like 2
novel_NIR_20248	chr9	44951880	44953909	+	44951880;44953523	44953336;44953909	ES	ENSMUST00000215292.2	novel	0.00	0	2.5	0	3;2	n	0.00	0	3.5	0	5;2	n	0.00	0	4.0	0	8;0	n	0.12	1	7.5	1	9;6	n	0.08	1	11.5	1	17;6	n	0.00	0	3.5	0	4;3	n	0.46	3	3.5	3	3;4	y	0.07	1	12.5	1	15;10	n	0.00	0	4.0	0	1;7	n	0.25	3	9.0	3	16;2	y	0.00	0	6.0	0	9;3	n	0.00	0	2.5	0	1;4	n	ENSMUSG00000032092.6	Mpzl2	chr9	protein_coding	myelin protein zero-like 2
novel_NIR_20249	chr9	44953518	44953909	+	44953523	44953909	A5SS	ENSMUST00000215292.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.45	5	6	5	6	y	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000032092.6	Mpzl2	chr9	protein_coding	myelin protein zero-like 2
novel_NIR_20250	chr9	44953523	44953961	+	44953523	44953909	A3SS	ENSMUST00000215292.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.40	4	6	4	6	y	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000032092.6	Mpzl2	chr9	protein_coding	myelin protein zero-like 2
novel_NIR_20251	chr9	44953523	44953961	+	44953523	44955013	A3SS	ENSMUST00000215886.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032092.6	Mpzl2	chr9	protein_coding	myelin protein zero-like 2
novel_NIR_20252	chr9	45017874	45018677	+	45015571	45018677	A5SS	ENSMUST00000050020.8	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.50	3	3	3	3	y	0.00	0	6	0	6	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000048534.8	Jaml	chr9	protein_coding	junction adhesion molecule like
novel_NIR_20253	chr9	45159439	45160113	+	45155585	45160113	A5SS	ENSMUST00000164650.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000091996.9	BC049352	chr9	protein_coding	cDNA sequence BC049352
novel_NIR_20254	chr9	45691134	45696181	-	45691134	45693250	A5SS&ES	ENSMUST00000132430.2	novel	0.00	0	5	0	5	n	0.50	2	2	2	2	y	0.00	0	6	0	6	n	0.33	3	6	3	6	y	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	ENSMUSG00000043987.19	Cep164	chr9	protein_coding	centrosomal protein 164
novel_NIR_20255	chr9	45691134	45696181	-	45691134	45697076	A5SS	ENSMUST00000117194.8	novel	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.30	3	7	3	7	y	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	-	-	-	-	-	-	ENSMUSG00000043987.19	Cep164	chr9	protein_coding	centrosomal protein 164
novel_NIR_20256	chr9	45691134	45696181	-	45691134	45698724	A5SS	ENSMUST00000217554.2	novel	0.00	0	8	0	8	n	0.29	2	5	2	5	y	0.00	0	8	0	8	n	0.60	3	2	3	2	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.14	1	6	1	6	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	ENSMUSG00000043987.19	Cep164	chr9	protein_coding	centrosomal protein 164
novel_NIR_20257	chr9	45691134	45696181	-	45691134;45693546	45693250;45696181	ES	ENSMUST00000213154.2	novel	0.00	0	4.5	0	5;4	n	0.50	2	2.0	2	2;2	y	0.00	0	4.0	0	6;2	n	0.33	3	6.0	3	6;6	y	0.00	0	8.0	0	9;7	n	-	-	-	-	-	-	0.00	0	2.0	0	3;1	n	0.20	1	4.0	1	6;2	n	0.00	0	3.0	0	5;1	n	0.00	0	4.5	0	9;0	n	0.00	0	4.0	0	6;2	n	0.00	0	7.0	0	8;6	n	ENSMUSG00000043987.19	Cep164	chr9	protein_coding	centrosomal protein 164
novel_NIR_20258	chr9	45693546	45698724	-	45691134	45698724	A3SS	ENSMUST00000217554.2	novel	0.11	1	8	1	8	n	0.17	1	5	1	5	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.50	3	3	3	3	y	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.14	1	6	1	6	n	0.25	1	3	1	3	n	0.11	1	8	1	8	n	0.00	0	10	0	10	n	0.33	4	8	4	8	y	ENSMUSG00000043987.19	Cep164	chr9	protein_coding	centrosomal protein 164
novel_NIR_20259	chr9	45693546	45698724	-	45693546;45697219	45697076;45698724	ES	ENSMUST00000132430.2	novel	0.33	1	2.0	1	0;4	n	0.25	1	3.0	1	3;3	n	0.00	0	3.0	0	1;5	n	0.00	0	4.0	0	2;6	n	0.26	3	8.5	3	3;14	y	0.00	0	2.0	0	0;4	n	0.00	0	4.0	0	1;7	n	0.22	1	3.5	1	2;5	n	0.20	1	4.0	1	4;4	n	0.13	1	6.5	1	3;10	n	0.00	0	3.0	0	2;4	n	0.67	4	2.0	4	1;3	y	ENSMUSG00000043987.19	Cep164	chr9	protein_coding	centrosomal protein 164
novel_NIR_20260	chr9	45693546	45698724	-	45697219	45698724	A3SS&ES	ENSMUST00000117194.8	novel	0.20	1	4	1	4	n	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.18	3	14	3	14	y	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.17	1	5	1	5	n	0.20	1	4	1	4	n	0.09	1	10	1	10	n	0.00	0	4	0	4	n	0.57	4	3	4	3	y	ENSMUSG00000043987.19	Cep164	chr9	protein_coding	centrosomal protein 164
novel_NIR_20261	chr9	45714075	45721002	-	45714075;45714626	45714471;45721002	ES	ENSMUST00000117194.8	novel	0.15	1	5.5	1	2;9	n	0.00	0	4.5	0	2;7	n	0.14	1	6.0	1	4;8	n	0.10	1	9.5	1	10;9	n	0.00	0	10.5	0	7;14	n	0.00	0	2.5	0	2;3	n	0.16	2	10.5	2	6;15	y	0.00	0	4.5	0	8;1	n	0.25	1	3.0	1	1;5	n	0.35	4	7.5	4	3;12	y	0.00	0	2.5	0	2;3	n	0.57	6	4.5	6	5;4	y	ENSMUSG00000043987.19	Cep164	chr9	protein_coding	centrosomal protein 164
novel_NIR_20262	chr9	45750586	45763285	+	45750586	45764186	A3SS	ENSMUST00000078111.11	novel	0.00	0	10	0	10	n	0.06	1	15	1	15	n	0.00	0	12	0	12	n	0.11	3	25	3	25	n	0.00	0	39	0	39	n	0.00	0	18	0	18	n	0.03	1	29	1	29	n	0.00	0	22	0	22	n	0.00	0	14	0	14	n	0.05	1	20	1	20	n	0.10	2	19	2	19	n	0.22	5	18	5	18	y	ENSMUSG00000032086.13	Bace1	chr9	protein_coding	beta-site APP cleaving enzyme 1
novel_NIR_20263	chr9	45763438	45764186	+	45750586	45764186	A5SS	ENSMUST00000078111.11	novel	0.17	2	10	2	10	y	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.14	4	25	4	25	n	0.13	6	39	6	39	n	0.10	2	18	2	18	n	0.00	0	29	0	29	n	0.04	1	22	1	22	n	0.00	0	14	0	14	n	0.05	1	20	1	20	n	0.00	0	19	0	19	n	0.00	0	18	0	18	n	ENSMUSG00000032086.13	Bace1	chr9	protein_coding	beta-site APP cleaving enzyme 1
novel_NIR_20264	chr9	45763438	45764186	+	45751340	45764186	A5SS	ENSMUST00000162559.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	4	0	4	0	y	1.00	6	0	6	0	y	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032086.13	Bace1	chr9	protein_coding	beta-site APP cleaving enzyme 1
novel_NIR_20265	chr9	45811249	45811509	-	45809789	45811509	A3SS	ENSMUST00000161203.8	novel	0.50	1	1	1	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.20	2	8	2	8	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	ENSMUSG00000042790.17	Rnf214	chr9	protein_coding	ring finger protein 214
novel_NIR_20266	chr9	45816217	45817598	-	45816217	45817650	A5SS	ENSMUST00000058720.13	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.12	1	7	1	7	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.60	3	2	3	2	y	0.38	3	5	3	5	y	0.36	4	7	4	7	y	0.60	3	2	3	2	y	0.00	0	3	0	3	n	ENSMUSG00000042790.17	Rnf214	chr9	protein_coding	ring finger protein 214
novel_NIR_20267	chr9	45816217	45817598	-	45816217	45818036	A5SS	ENSMUST00000161203.8	novel	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.11	1	8	1	8	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.38	3	5	3	5	y	0.60	3	2	3	2	y	0.33	4	8	4	8	y	0.33	3	6	3	6	y	0.00	0	9	0	9	n	ENSMUSG00000042790.17	Rnf214	chr9	protein_coding	ring finger protein 214
novel_NIR_20268	chr9	45831192	45837194	+	45831192	45837216	A3SS	ENSMUST00000215189.2	novel	0.33	1	2	1	2	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000035382.10	Pcsk7	chr9	protein_coding	proprotein convertase subtilisin/kexin type 7
novel_NIR_20269	chr9	45843071	45843691	-	45843071	45846844	A5SS	ENSMUST00000215509.2	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032085.6	Tagln	chr9	protein_coding	transgelin
novel_NIR_20270	chr9	45843071	45843691	-	45843071	45847132	A5SS	ENSMUST00000034590.4	novel	0.18	2	9	2	9	y	0.09	1	10	1	10	n	0.25	1	3	1	3	n	0.13	2	13	2	13	n	0.00	0	20	0	20	n	-	-	-	-	-	-	0.00	0	40	0	40	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	ENSMUSG00000032085.6	Tagln	chr9	protein_coding	transgelin
novel_NIR_20271	chr9	45843071	45844016	-	45843071	45846844	A5SS	ENSMUST00000215509.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032085.6	Tagln	chr9	protein_coding	transgelin
novel_NIR_20272	chr9	45843071	45844016	-	45843071	45847132	A5SS	ENSMUST00000034590.4	novel	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.19	3	13	3	13	y	0.13	3	20	3	20	n	-	-	-	-	-	-	0.00	0	40	0	40	n	0.50	2	2	2	2	y	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	ENSMUSG00000032085.6	Tagln	chr9	protein_coding	transgelin
novel_NIR_20273	chr9	45844287	45844828	+	45842782	45844828	A5SS	ENSMUST00000213884.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000111521.2	Gm48529	chr9	lncRNA	predicted gene, 48529
novel_NIR_20274	chr9	45857064	45857804	-	45857064	45858043	A5SS	ENSMUST00000161042.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.60	3	2	3	2	y	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000034908.17	Sidt2	chr9	protein_coding	SID1 transmembrane family, member 2
novel_NIR_20275	chr9	45858353	45859137	-	45858353	45858839	A5SS&ES	ENSMUST00000162529.8	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.33	3	6	3	6	y	0.20	1	4	1	4	n	0.11	1	8	1	8	n	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	ENSMUSG00000034908.17	Sidt2	chr9	protein_coding	SID1 transmembrane family, member 2
novel_NIR_20276	chr9	45858353	45859137	-	45858353	45859513	A5SS	ENSMUST00000162379.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000034908.17	Sidt2	chr9	protein_coding	SID1 transmembrane family, member 2
novel_NIR_20277	chr9	45890027	45892341	-	45890027	45895149	A5SS	ENSMUST00000216334.2	novel	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000003131.8	Pafah1b2	chr9	protein_coding	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2
novel_NIR_20278	chr9	45890027	45892341	-	45890027	45895480	A5SS	ENSMUST00000215427.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000003131.8	Pafah1b2	chr9	protein_coding	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2
novel_NIR_20279	chr9	45890027	45892341	-	45890027	45895957	A5SS	ENSMUST00000217636.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000003131.8	Pafah1b2	chr9	protein_coding	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2
novel_NIR_20280	chr9	45890027	45892341	-	45890027	45896600	A5SS	ENSMUST00000214179.2	novel	0.00	0	1	0	1	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.50	3	3	3	3	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000003131.8	Pafah1b2	chr9	protein_coding	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2
novel_NIR_20281	chr9	45890027	45892341	-	45890027	45923821	A5SS	ENSMUST00000217514.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000003131.8	Pafah1b2	chr9	protein_coding	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2
novel_NIR_20282	chr9	46126569	46130724	+	46123860	46130724	A5SS	ENSMUST00000126865.8	novel	0.06	3	49	3	49	n	0.07	2	27	2	27	n	0.00	0	62	0	62	n	0.00	0	33	0	33	n	0.02	1	51	1	51	n	0.03	1	35	1	35	n	0.00	0	41	0	41	n	0.00	0	32	0	32	n	0.00	0	18	0	18	n	0.24	11	34	11	34	y	0.00	0	37	0	37	n	0.16	10	54	10	54	y	ENSMUSG00000034135.16	Sik3	chr9	protein_coding	SIK family kinase 3
novel_NIR_20283	chr9	46127508	46130724	+	46123860	46130724	A5SS	ENSMUST00000126865.8	novel	0.04	2	49	2	49	n	0.00	0	27	0	27	n	0.02	1	62	1	62	n	0.20	8	33	8	33	y	0.00	0	51	0	51	n	0.00	0	35	0	35	n	0.00	0	41	0	41	n	0.00	0	32	0	32	n	0.18	4	18	4	18	y	0.00	0	34	0	34	n	0.12	5	37	5	37	n	0.00	0	54	0	54	n	ENSMUSG00000034135.16	Sik3	chr9	protein_coding	SIK family kinase 3
novel_NIR_20284	chr9	46145838	46145949	-	46145838	46146557	A5SS	ENSMUST00000214729.2	novel	0.19	41	178	41	178	y	0.14	33	200	33	200	n	0.17	25	121	25	121	y	0.21	60	232	60	232	y	0.28	49	127	49	127	n	0.29	17	42	17	42	y	0.34	56	111	56	111	y	0.31	29	65	29	65	y	0.14	27	162	27	162	n	0.22	66	235	66	235	n	0.23	56	183	56	183	y	0.17	39	189	39	189	n	ENSMUSG00000032081.11	Apoc3	chr9	protein_coding	apolipoprotein C-III
novel_NIR_20285	chr9	46145838	46146025	-	46145838	46146557	A5SS	ENSMUST00000214729.2	novel	0.16	34	178	34	178	y	0.20	51	200	51	200	y	0.25	41	121	41	121	y	0.17	49	232	49	232	y	0.26	45	127	45	127	y	0.26	15	42	15	42	y	0.22	32	111	32	111	y	0.30	28	65	28	65	y	0.24	51	162	51	162	y	0.17	49	235	49	235	n	0.27	68	183	68	183	y	0.19	44	189	44	189	y	ENSMUSG00000032081.11	Apoc3	chr9	protein_coding	apolipoprotein C-III
novel_NIR_20286	chr9	46145838;46146016	46145949;46146557	-	46145838	46146557	cassetteExon	ENSMUST00000214729.2	novel	0.10	20.5	178	41;0	178	n	0.08	16.5	200	33;0	200	n	0.09	12.5	121	25;0	121	n	0.11	30.0	232	60;0	232	n	0.17	25.5	127	49;2	127	y	0.17	8.5	42	17;0	42	n	0.20	28.0	111	56;0	111	n	0.18	14.5	65	29;0	65	n	0.08	13.5	162	27;0	162	n	0.12	33.0	235	66;0	235	n	0.13	28.0	183	56;0	183	n	0.10	21.0	189	39;3	189	n	ENSMUSG00000032081.11	Apoc3	chr9	protein_coding	apolipoprotein C-III
novel_NIR_20287	chr9	46146024	46146222	-	46146024	46146617	A5SS	ENSMUST00000145672.2	novel	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.80	4	1	4	1	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000032081.11	Apoc3	chr9	protein_coding	apolipoprotein C-III
novel_NIR_20288	chr9	46146024	46146299	-	46146024	46146617	A5SS	ENSMUST00000145672.2	novel	0.60	3	2	3	2	y	0.25	1	3	1	3	n	0.44	4	5	4	5	y	0.67	4	2	4	2	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.73	8	3	8	3	y	0.67	2	1	2	1	y	0.75	3	1	3	1	y	0.75	3	1	3	1	y	0.75	3	1	3	1	y	0.67	2	1	2	1	y	ENSMUSG00000032081.11	Apoc3	chr9	protein_coding	apolipoprotein C-III
novel_NIR_20289	chr9	46146024	46146299	-	46146024	46146820	A5SS	ENSMUST00000118649.8	novel	0.14	3	19	3	19	n	0.05	1	18	1	18	n	0.11	4	31	4	31	n	0.12	4	29	4	29	n	0.18	3	14	3	14	y	0.07	1	14	1	14	n	0.29	8	20	8	20	y	0.15	2	11	2	11	y	0.09	3	32	3	32	n	0.07	3	39	3	39	n	0.10	3	27	3	27	n	0.04	2	46	2	46	n	ENSMUSG00000032081.11	Apoc3	chr9	protein_coding	apolipoprotein C-III
novel_NIR_20290	chr9	46146024	46146373	-	46146024	46146617	A5SS	ENSMUST00000145672.2	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.75	3	1	3	1	y	0.00	0	1	0	1	n	ENSMUSG00000032081.11	Apoc3	chr9	protein_coding	apolipoprotein C-III
novel_NIR_20291	chr9	46146024	46146432	-	46146024	46146617	A5SS	ENSMUST00000145672.2	novel	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	3	3	3	3	y	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.50	1	1	1	1	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	ENSMUSG00000032081.11	Apoc3	chr9	protein_coding	apolipoprotein C-III
novel_NIR_20292	chr9	46146024	46147032	-	46146024	46146617	5pMXE	ENSMUST00000145672.2	novel	0.50	2	2	2	2	y	0.50	3	3	3	3	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.67	2	1	2	1	y	ENSMUSG00000032081.11	Apoc3	chr9	protein_coding	apolipoprotein C-III
novel_NIR_20293	chr9	46146024	46147032	-	46146024	46146820	5pMXE	ENSMUST00000118649.8	novel	0.10	2	19	2	19	n	0.14	3	18	3	18	n	0.00	0	31	0	31	n	0.00	0	29	0	29	n	0.18	3	14	3	14	y	0.07	1	14	1	14	n	0.09	2	20	2	20	n	0.00	0	11	0	11	n	0.03	1	32	1	32	n	0.05	2	39	2	39	n	0.00	0	27	0	27	n	0.04	2	46	2	46	n	ENSMUSG00000032081.11	Apoc3	chr9	protein_coding	apolipoprotein C-III
novel_NIR_20294	chr9	46179917	46180379	+	46180136	46180379	5pMXE	ENSMUST00000121598.8	novel	0.28	49	129	49	129	y	0.21	42	159	42	159	y	0.15	63	348	63	348	y	0.23	64	220	64	220	y	0.27	58	158	58	158	y	0.30	30	71	30	71	y	0.33	65	134	65	134	y	0.11	9	72	9	72	n	0.28	46	121	46	121	y	0.20	57	222	57	222	y	0.19	52	229	52	229	y	0.23	68	229	68	229	y	ENSMUSG00000032079.13	Apoa5	chr9	protein_coding	apolipoprotein A-V
novel_NIR_20295	chr9	46181261	46181346	+	46181261	46181497	A3SS	ENSMUST00000213878.2	novel	0.00	0	194	0	194	n	0.00	0	195	0	195	n	0.00	0	264	0	264	n	0.09	22	220	22	220	n	0.00	0	191	0	191	n	0.00	0	85	0	85	n	0.00	0	255	0	255	n	0.00	0	91	0	91	n	0.00	0	131	0	131	n	0.00	0	238	0	238	n	0.41	167	238	167	238	y	0.00	0	234	0	234	n	ENSMUSG00000032079.13	Apoa5	chr9	protein_coding	apolipoprotein A-V
novel_NIR_20296	chr9	46181424	46181449	+	46181216	46181449	A5SS	ENSMUST00000215458.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	14	0	14	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032079.13	Apoa5	chr9	protein_coding	apolipoprotein A-V
novel_NIR_20297	chr9	46184665	46184817	+	46184665	46184819	A3SS	ENSMUST00000125239.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000032078.18	Zpr1	chr9	protein_coding	ZPR1 zinc finger
novel_NIR_20298	chr9	46184665	46184817	+	46184665	46185354	A3SS	ENSMUST00000114552.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000032078.18	Zpr1	chr9	protein_coding	ZPR1 zinc finger
novel_NIR_20299	chr9	46187151	46187502	+	46187151	46187710	A3SS	ENSMUST00000114552.4	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032078.18	Zpr1	chr9	protein_coding	ZPR1 zinc finger
novel_NIR_20300	chr9	47730115	47731205	+	47730115	47740675	A3SS	ENSMUST00000152459.8	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000032076.21	Cadm1	chr9	protein_coding	cell adhesion molecule 1
novel_NIR_20301	chr9	48332106	48335105	+	48332106	48335094	A3SS	ENSMUST00000209981.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000109675.3	Nxpe1-ps	chr9	transcribed_unprocessed_pseudogene	neurexophilin and PC-esterase domain family, member 1, pseudogene
novel_NIR_20302	chr9	48386497	48389897	-	48386497	48391707	A5SS	ENSMUST00000213895.2	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.33	2	4	2	4	y	0.50	1	1	1	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	1.00	4	0	4	0	y	1.00	2	0	2	0	y	ENSMUSG00000032026.8	Rexo2	chr9	protein_coding	RNA exonuclease 2
novel_NIR_20303	chr9	48386497	48391591	-	48386497	48391707	A5SS	ENSMUST00000213895.2	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.43	3	4	3	4	y	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032026.8	Rexo2	chr9	protein_coding	RNA exonuclease 2
novel_NIR_20304	chr9	48503662	48507931	-	48503662	48508294	A5SS	ENSMUST00000136813.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	12	0	12	0	y	ENSMUSG00000032271.14	Nnmt	chr9	protein_coding	nicotinamide N-methyltransferase
novel_NIR_20305	chr9	48503662	48507931	-	48503662	48508523	A5SS	ENSMUST00000126109.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	12	0	12	0	y	ENSMUSG00000032271.14	Nnmt	chr9	protein_coding	nicotinamide N-methyltransferase
novel_NIR_20306	chr9	48503662	48509183	-	48503662	48508294	5pMXE	ENSMUST00000136813.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032271.14	Nnmt	chr9	protein_coding	nicotinamide N-methyltransferase
novel_NIR_20307	chr9	48503662	48509183	-	48503662	48508523	5pMXE	ENSMUST00000126109.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032271.14	Nnmt	chr9	protein_coding	nicotinamide N-methyltransferase
novel_NIR_20308	chr9	48503662	48514677	-	48503662	48508294	5pMXE	ENSMUST00000136813.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032271.14	Nnmt	chr9	protein_coding	nicotinamide N-methyltransferase
novel_NIR_20309	chr9	48503662	48514677	-	48503662	48508523	5pMXE	ENSMUST00000126109.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032271.14	Nnmt	chr9	protein_coding	nicotinamide N-methyltransferase
novel_NIR_20310	chr9	48503662	48514793	-	48503662	48508294	5pMXE	ENSMUST00000136813.2	novel	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	9	0	9	0	y	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	7	0	7	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000032271.14	Nnmt	chr9	protein_coding	nicotinamide N-methyltransferase
novel_NIR_20311	chr9	48503662	48514793	-	48503662	48508523	5pMXE	ENSMUST00000126109.2	novel	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	9	0	9	0	y	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	7	0	7	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000032271.14	Nnmt	chr9	protein_coding	nicotinamide N-methyltransferase
novel_NIR_20312	chr9	48628669	48651431	-	48628669	48654764	A5SS	ENSMUST00000093852.5	novel	0.00	0	45	0	45	n	0.00	0	26	0	26	n	0.00	0	45	0	45	n	0.00	0	51	0	51	n	0.00	0	74	0	74	n	0.00	0	58	0	58	n	0.00	0	56	0	56	n	0.00	0	29	0	29	n	0.00	0	3	0	3	n	0.25	2	6	2	6	y	0.00	0	20	0	20	n	0.00	0	19	0	19	n	ENSMUSG00000066687.6	Zbtb16	chr9	protein_coding	zinc finger and BTB domain containing 16
novel_NIR_20313	chr9	48870661	48895716	-	48870661	48876046	5pMXE	ENSMUST00000008734.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000008590.5	Htr3b	chr9	protein_coding	5-hydroxytryptamine (serotonin) receptor 3B
novel_NIR_20314	chr9	48915282	48919372	+	48915282	48919729	A3SS	ENSMUST00000213874.2	novel	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	ENSMUSG00000032267.9	Usp28	chr9	protein_coding	ubiquitin specific peptidase 28
novel_NIR_20315	chr9	48938189	48939410	+	48938189	48939373	A3SS	ENSMUST00000213874.2	novel	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.08	1	11	1	11	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.00	0	31	0	31	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.24	6	19	6	19	y	ENSMUSG00000032267.9	Usp28	chr9	protein_coding	ubiquitin specific peptidase 28
novel_NIR_20316	chr9	48972530	48973493	+	48972514	48973493	A5SS	ENSMUST00000034803.10	novel	0.09	1	10	1	10	n	0.00	0	6	0	6	n	0.19	6	25	6	25	y	0.00	0	16	0	16	n	0.00	0	16	0	16	n	0.00	0	7	0	7	n	0.00	0	21	0	21	n	0.20	3	12	3	12	y	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.00	0	23	0	23	n	ENSMUSG00000032264.10	Zw10	chr9	protein_coding	zw10 kinetochore protein
novel_NIR_20317	chr9	49359319	49359954	-	49359319	49364624	A5SS	ENSMUST00000055096.5	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000040219.5	Ttc12	chr9	protein_coding	tetratricopeptide repeat domain 12
novel_NIR_20318	chr9	49380956	49381529	-	49378131	49381529	A3SS	ENSMUST00000055096.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000040219.5	Ttc12	chr9	protein_coding	tetratricopeptide repeat domain 12
novel_NIR_20319	chr9	50410470	50412346	-	50410470	50415921	A5SS	ENSMUST00000190941.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000101304.2	Plet1os	chr9	lncRNA	placenta expressed transcript 1, opposite strand
novel_NIR_20320	chr9	50436079	50436334	-	50436079	50436453	A5SS	ENSMUST00000214213.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000032067.7	Pts	chr9	protein_coding	6-pyruvoyl-tetrahydropterin synthase
novel_NIR_20321	chr9	50436079	50436334	-	50436079	50439857	A5SS	ENSMUST00000215416.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032067.7	Pts	chr9	protein_coding	6-pyruvoyl-tetrahydropterin synthase
novel_NIR_20322	chr9	50436079	50438170	-	50436079	50439857	A5SS	ENSMUST00000215416.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000032067.7	Pts	chr9	protein_coding	6-pyruvoyl-tetrahydropterin synthase
novel_NIR_20323	chr9	50438316	50439446	-	50438249	50439446	A3SS	ENSMUST00000214213.2	novel	0.06	1	16	1	16	n	0.06	1	15	1	15	n	0.12	1	7	1	7	n	0.10	2	18	2	18	n	0.17	4	20	4	20	y	0.00	0	9	0	9	n	0.08	3	33	3	33	n	0.35	6	11	6	11	y	0.14	2	12	2	12	n	0.05	2	39	2	39	n	0.12	2	14	2	14	n	0.03	1	29	1	29	n	ENSMUSG00000032067.7	Pts	chr9	protein_coding	6-pyruvoyl-tetrahydropterin synthase
novel_NIR_20324	chr9	50438316	50439446	-	50438316	50439857	A5SS	ENSMUST00000214873.2	novel	1.00	1	0	1	0	n	0.25	1	3	1	3	n	1.00	1	0	1	0	n	0.33	2	4	2	4	y	0.67	4	2	4	2	y	-	-	-	-	-	-	0.75	3	1	3	1	y	1.00	6	0	6	0	y	1.00	2	0	2	0	y	0.33	2	4	2	4	y	0.67	2	1	2	1	y	0.25	1	3	1	3	n	ENSMUSG00000032067.7	Pts	chr9	protein_coding	6-pyruvoyl-tetrahydropterin synthase
novel_NIR_20325	chr9	50439532	50439630	-	50439532	50439857	A5SS	ENSMUST00000214213.2	novel	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.17	1	5	1	5	n	0.23	3	10	3	10	y	0.25	5	15	5	15	y	0.20	1	4	1	4	n	0.00	0	20	0	20	n	0.07	1	13	1	13	n	0.23	3	10	3	10	y	0.00	0	29	0	29	n	0.08	1	11	1	11	n	0.05	1	18	1	18	n	ENSMUSG00000032067.7	Pts	chr9	protein_coding	6-pyruvoyl-tetrahydropterin synthase
novel_NIR_20326	chr9	50455859	50457165	-	50455859;50456762	50456647;50457165	ES	ENSMUST00000119103.2	novel	0.00	0	29.0	0	35;23	n	0.05	1	18.5	1	19;18	n	0.51	9	8.5	9	7;10	y	0.03	1	36.0	1	32;40	n	0.00	0	47.5	0	39;56	n	0.39	6	9.5	6	8;11	y	0.07	3	38.0	3	41;35	n	0.56	12	9.5	12	5;14	y	0.23	7	23.5	7	30;17	y	0.21	15	56.0	15	51;61	y	0.11	4	34.0	4	38;30	n	0.11	4	32.0	4	29;35	n	ENSMUSG00000032066.10	Bco2	chr9	protein_coding	beta-carotene oxygenase 2
novel_NIR_20327	chr9	50466277;50467353	50467203;50476669	+	50466277	50476669	cassetteExon	ENSMUST00000213916.2	novel	0.00	0.0	24	0;0	24	n	0.12	2.5	18	2;3	18	n	0.15	2.5	14	3;2	14	y	0.05	1.5	31	3;0	31	n	0.10	3.0	26	4;2	26	n	0.23	1.5	5	0;3	5	n	0.07	2.0	28	3;1	28	n	0.00	0.0	7	0;0	7	n	0.06	2.0	32	2;2	32	n	0.14	8.5	51	10;7	51	n	0.14	4.5	28	6;3	28	n	0.08	3.0	36	6;0	36	n	ENSMUSG00000039217.14	Il18	chr9	protein_coding	interleukin 18
novel_NIR_20328	chr9	50467353	50476669	+	50466277	50476669	A5SS	ENSMUST00000213916.2	novel	0.00	0	24	0	24	n	0.14	3	18	3	18	n	0.12	2	14	2	14	n	0.00	0	31	0	31	n	0.07	2	26	2	26	n	0.38	3	5	3	5	y	0.03	1	28	1	28	n	0.00	0	7	0	7	n	0.06	2	32	2	32	n	0.12	7	51	7	51	n	0.10	3	28	3	28	n	0.00	0	36	0	36	n	ENSMUSG00000039217.14	Il18	chr9	protein_coding	interleukin 18
novel_NIR_20329	chr9	50476826	50483984	+	50476826	50486568	A3SS	ENSMUST00000213916.2	novel	0.04	2	46	2	46	n	0.00	0	25	0	25	n	0.20	3	12	3	12	y	0.00	0	45	0	45	n	0.07	2	27	2	27	n	0.00	0	16	0	16	n	0.00	0	45	0	45	n	0.06	1	15	1	15	n	0.04	2	44	2	44	n	0.01	1	80	1	80	n	0.00	0	31	0	31	n	0.04	2	50	2	50	n	ENSMUSG00000039217.14	Il18	chr9	protein_coding	interleukin 18
novel_NIR_20330	chr9	50476826;50484198	50483984;50486568	+	50476826	50486568	cassetteExon	ENSMUST00000213916.2	novel	0.08	4.0	46	2;6	46	n	0.06	1.5	25	0;3	25	n	0.11	1.5	12	3;0	12	n	0.01	0.5	45	0;1	45	n	0.24	8.5	27	2;15	27	y	0.09	1.5	16	0;3	16	n	0.04	2.0	45	0;4	45	n	0.03	0.5	15	1;0	15	n	0.06	3.0	44	2;4	44	n	0.09	7.5	80	1;14	80	n	0.15	5.5	31	0;11	31	n	0.06	3.0	50	2;4	50	n	ENSMUSG00000039217.14	Il18	chr9	protein_coding	interleukin 18
novel_NIR_20331	chr9	50476826;50484198	50484060;50486568	+	50476826	50486568	cassetteExon	ENSMUST00000213916.2	novel	0.06	3.0	46	0;6	46	n	0.09	2.5	25	2;3	25	n	0.00	0.0	12	0;0	12	n	0.10	5.0	45	9;1	45	n	0.24	8.5	27	2;15	27	y	0.11	2.0	16	1;3	16	n	0.07	3.5	45	3;4	45	n	0.00	0.0	15	0;0	15	n	0.06	3.0	44	2;4	44	n	0.12	10.5	80	7;14	80	n	0.21	8.0	31	5;11	31	y	0.09	5.0	50	6;4	50	n	ENSMUSG00000039217.14	Il18	chr9	protein_coding	interleukin 18
novel_NIR_20332	chr9	50488967	50489061	+	50488848	50489061	A5SS	ENSMUST00000059081.13	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	ENSMUSG00000039217.14	Il18	chr9	protein_coding	interleukin 18
novel_NIR_20333	chr9	50519233	50520672	-	50519236	50520672	A3SS	ENSMUST00000131351.8	novel	0.00	0	13	0	13	n	0.00	0	13	0	13	n	0.00	0	18	0	18	n	0.00	0	21	0	21	n	0.00	0	22	0	22	n	0.00	0	11	0	11	n	0.00	0	18	0	18	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.25	3	9	3	9	y	0.00	0	17	0	17	n	ENSMUSG00000059820.15	Nkapd1	chr9	protein_coding	NKAP domain containing 1
novel_NIR_20334	chr9	50593500	50595025	-	50593500;50593926	50593837;50595025	ES	ENSMUST00000034566.15	novel	0.31	2	4.5	2	8;1	y	0.00	0	6.0	0	8;4	n	0.21	3	11.5	3	11;12	y	0.00	0	12.0	0	15;9	n	0.00	0	17.0	0	18;16	n	0.47	7	8.0	7	4;12	y	0.26	6	17.5	6	16;19	y	0.00	0	18.5	0	19;18	n	0.24	4	13.0	4	11;15	y	0.06	2	30.5	2	37;24	n	0.07	1	12.5	1	12;13	n	0.00	0	18.0	0	21;15	n	ENSMUSG00000032064.18	Dixdc1	chr9	protein_coding	DIX domain containing 1
novel_NIR_20335	chr9	50593500	50595025	-	50593926	50595025	A3SS	ENSMUST00000124424.2	novel	0.67	2	1	2	1	y	0.00	0	4	0	4	n	0.20	3	12	3	12	y	0.00	0	9	0	9	n	0.00	0	16	0	16	n	0.37	7	12	7	12	y	0.24	6	19	6	19	y	0.00	0	18	0	18	n	0.21	4	15	4	15	y	0.08	2	24	2	24	n	0.07	1	13	1	13	n	0.00	0	15	0	15	n	ENSMUSG00000032064.18	Dixdc1	chr9	protein_coding	DIX domain containing 1
novel_NIR_20336	chr9	50639196	50648944	-	50622272	50648944	A3SS	ENSMUST00000121634.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032064.18	Dixdc1	chr9	protein_coding	DIX domain containing 1
novel_NIR_20337	chr9	50652660	50657742	-	50652660;50653598	50653561;50657742	ES	ENSMUST00000239417.2	novel	0.06	3	45.5	3	49;42	n	0.19	10	43.5	10	44;43	y	0.00	0	72.5	0	76;69	n	0.06	4	67.0	4	61;73	n	0.09	7	74.0	7	71;77	n	0.09	5	51.0	5	50;52	n	0.00	0	70.5	0	74;67	n	0.00	0	47.5	0	48;47	n	0.12	7	50.0	7	43;57	n	0.02	2	78.5	2	81;76	n	0.04	2	55.0	2	55;55	n	0.05	3	54.5	3	56;53	n	ENSMUSG00000032062.4	2310030G06Rik	chr9	protein_coding	RIKEN cDNA 2310030G06 gene
novel_NIR_20338	chr9	50657985	50664381	+	50662876	50664381	5pMXE	ENSMUST00000217475.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	6	0	6	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000032060.11	Cryab	chr9	protein_coding	crystallin, alpha B
novel_NIR_20339	chr9	50657985	50664381	+	50663247	50664381	5pMXE	ENSMUST00000214609.2	novel	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.71	5	2	5	2	y	1.00	6	0	6	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	1.00	3	0	3	0	y	0.00	0	1	0	1	n	ENSMUSG00000032060.11	Cryab	chr9	protein_coding	crystallin, alpha B
novel_NIR_20340	chr9	50657985	50664486	+	50664384	50664486	5pMXE	ENSMUST00000214962.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032060.11	Cryab	chr9	protein_coding	crystallin, alpha B
novel_NIR_20341	chr9	50657985	50664486	+	50664395	50664486	5pMXE	ENSMUST00000216755.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032060.11	Cryab	chr9	protein_coding	crystallin, alpha B
novel_NIR_20342	chr9	50662876	50664386	+	50662876	50664381	A3SS	ENSMUST00000217475.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000032060.11	Cryab	chr9	protein_coding	crystallin, alpha B
novel_NIR_20343	chr9	50676224	50679158	-	50675590	50679158	A3SS	ENSMUST00000177546.8	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000037971.11	1110032A03Rik	chr9	protein_coding	RIKEN cDNA 1110032A03 gene
novel_NIR_20344	chr9	50676224	50679158	-	50676466	50679158	A3SS&ES	ENSMUST00000177022.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000037971.11	1110032A03Rik	chr9	protein_coding	RIKEN cDNA 1110032A03 gene
novel_NIR_20345	chr9	50676226	50678989	-	50676226	50676331	A5SS&ES	ENSMUST00000177022.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.86	6	1	6	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	ENSMUSG00000037971.11	1110032A03Rik	chr9	protein_coding	RIKEN cDNA 1110032A03 gene
novel_NIR_20346	chr9	50676226	50678989	-	50676226	50677000	5pMXE	ENSMUST00000042576.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.86	6	1	6	1	y	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000037971.11	1110032A03Rik	chr9	protein_coding	RIKEN cDNA 1110032A03 gene
novel_NIR_20347	chr9	50676226	50678989	-	50676226	50679002	A5SS	ENSMUST00000177142.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.67	6	3	6	3	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.50	4	4	4	4	y	0.17	1	5	1	5	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	ENSMUSG00000037971.11	1110032A03Rik	chr9	protein_coding	RIKEN cDNA 1110032A03 gene
novel_NIR_20348	chr9	50676226	50678989	-	50676226	50682101	A5SS	ENSMUST00000176894.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	6	0	6	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000037971.11	1110032A03Rik	chr9	protein_coding	RIKEN cDNA 1110032A03 gene
novel_NIR_20349	chr9	50683355	50685298	-	50683355	50685285	A5SS	ENSMUST00000176894.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000037971.11	1110032A03Rik	chr9	protein_coding	RIKEN cDNA 1110032A03 gene
novel_NIR_20350	chr9	50717669	50754034	+	50720106	50754034	5pMXE	ENSMUST00000175728.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.14	1	6	1	6	n	0.00	0	1	0	1	n	0.00	0	11	0	11	n	-	-	-	-	-	-	0.33	2	4	2	4	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.50	1	1	1	1	n	ENSMUSG00000032059.14	Alg9	chr9	protein_coding	asparagine-linked glycosylation 9 (alpha 1,2 mannosyltransferase)
novel_NIR_20351	chr9	50717669	50754034	+	50734382	50754034	5pMXE	ENSMUST00000161200.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000032059.14	Alg9	chr9	protein_coding	asparagine-linked glycosylation 9 (alpha 1,2 mannosyltransferase)
novel_NIR_20352	chr9	50717669	50754034	+	50746977	50754034	5pMXE	ENSMUST00000162596.2	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000032059.14	Alg9	chr9	protein_coding	asparagine-linked glycosylation 9 (alpha 1,2 mannosyltransferase)
novel_NIR_20353	chr9	50756706	50765317	+	50756706	50769136	A3SS	ENSMUST00000174555.2	novel	1.00	2	0	2	0	y	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.30	3	7	3	7	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000032058.15	Ppp2r1b	chr9	protein_coding	protein phosphatase 2, regulatory subunit A, beta
novel_NIR_20354	chr9	50756706;50765411	50765317;50769136	+	50756706	50769136	cassetteExon	ENSMUST00000174555.2	novel	1.00	1.0	0	2;0	0	n	0.33	0.5	1	1;0	1	n	0.00	0.0	1	0;0	1	n	0.00	0.0	9	0;0	9	n	0.00	0.0	2	0;0	2	n	0.00	0.0	2	0;0	2	n	0.00	0.0	2	0;0	2	n	0.00	0.0	5	0;0	5	n	0.00	0.0	5	0;0	5	n	0.33	3.5	7	3;4	7	y	1.00	1.0	0	2;0	0	n	-	-	-	-	-	-	ENSMUSG00000032058.15	Ppp2r1b	chr9	protein_coding	protein phosphatase 2, regulatory subunit A, beta
novel_NIR_20355	chr9	50759733	50769136	+	50756706	50769136	A5SS	ENSMUST00000174555.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.10	1	9	1	9	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.50	5	5	5	5	y	0.00	0	5	0	5	n	0.00	0	7	0	7	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032058.15	Ppp2r1b	chr9	protein_coding	protein phosphatase 2, regulatory subunit A, beta
novel_NIR_20356	chr9	50759733	50769136	+	50768398	50769136	5pMXE	ENSMUST00000174628.8	novel	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	19	0	19	n	0.06	1	17	1	17	n	0.05	1	20	1	20	n	0.00	0	7	0	7	n	0.09	1	10	1	10	n	0.22	5	18	5	18	y	0.00	0	5	0	5	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	ENSMUSG00000032058.15	Ppp2r1b	chr9	protein_coding	protein phosphatase 2, regulatory subunit A, beta
novel_NIR_20357	chr9	50765411	50769136	+	50768398	50769136	5pMXE	ENSMUST00000174628.8	novel	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	19	0	19	n	0.00	0	17	0	17	n	0.00	0	20	0	20	n	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	18	0	18	n	0.00	0	5	0	5	n	0.21	4	15	4	15	y	0.00	0	10	0	10	n	0.00	0	14	0	14	n	ENSMUSG00000032058.15	Ppp2r1b	chr9	protein_coding	protein phosphatase 2, regulatory subunit A, beta
novel_NIR_20358	chr9	50770251	50772581	+	50770251	50772593	A3SS	ENSMUST00000175926.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032058.15	Ppp2r1b	chr9	protein_coding	protein phosphatase 2, regulatory subunit A, beta
novel_NIR_20359	chr9	50770251	50772581	+	50770251	50777744	A3SS	ENSMUST00000175640.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032058.15	Ppp2r1b	chr9	protein_coding	protein phosphatase 2, regulatory subunit A, beta
novel_NIR_20360	chr9	50778696	50778970	+	50778696	50781363	A3SS	ENSMUST00000175645.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032058.15	Ppp2r1b	chr9	protein_coding	protein phosphatase 2, regulatory subunit A, beta
novel_NIR_20361	chr9	50790601	50791199	+	50790601	50794774	A3SS	ENSMUST00000174628.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000032058.15	Ppp2r1b	chr9	protein_coding	protein phosphatase 2, regulatory subunit A, beta
novel_NIR_20362	chr9	50818871	50846716	-	50839588	50846716	3pMXE	ENSMUST00000068484.16	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000037112.17	Sik2	chr9	protein_coding	salt inducible kinase 2
novel_NIR_20363	chr9	50818871	50846716	-	50844265	50846716	3pMXE	ENSMUST00000177203.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000037112.17	Sik2	chr9	protein_coding	salt inducible kinase 2
novel_NIR_20364	chr9	51206299	51223781	-	51206299	51223851	A5SS	ENSMUST00000181366.3	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.11	1	8	1	8	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.33	2	4	2	4	y	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.17	1	5	1	5	n	ENSMUSG00000036027.14	1810046K07Rik	chr9	protein_coding	RIKEN cDNA 1810046K07 gene
novel_NIR_20365	chr9	51206299	51223781	-	51206299	51229581	A5SS	ENSMUST00000039959.11	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000036027.14	1810046K07Rik	chr9	protein_coding	RIKEN cDNA 1810046K07 gene
novel_NIR_20366	chr9	51962720	51972132	+	51958535	51972132	A5SS	ENSMUST00000163153.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032050.19	Rdx	chr9	protein_coding	radixin
novel_NIR_20367	chr9	51984584	51992343	+	51984584	51986285	3pMXE	ENSMUST00000061352.11	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.67	4	2	4	2	y	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032050.19	Rdx	chr9	protein_coding	radixin
novel_NIR_20368	chr9	52028097	52028839	-	52028102	52028839	A3SS	ENSMUST00000213645.2	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.25	2	6	2	6	y	ENSMUSG00000035164.9	Zc3h12c	chr9	protein_coding	zinc finger CCCH type containing 12C
novel_NIR_20369	chr9	52038002	52079802	-	52038002;52055726	52054975;52079802	ES	ENSMUST00000213645.2	novel	0.00	0	0.5	0	0;1	n	-	-	-	-	-	-	0.50	2	2.0	2	3;1	y	0.00	0	3.0	0	4;2	n	0.00	0	2.5	0	2;3	n	0.00	0	3.0	0	6;0	n	0.00	0	0.5	0	1;0	n	0.00	0	1.0	0	1;1	n	0.00	0	3.5	0	1;6	n	0.00	0	4.0	0	7;1	n	0.00	0	1.5	0	2;1	n	0.00	0	4.0	0	4;4	n	ENSMUSG00000035164.9	Zc3h12c	chr9	protein_coding	zinc finger CCCH type containing 12C
novel_NIR_20370	chr9	53252770	53252893	+	53252770	53264454	A3SS	ENSMUST00000132410.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000034584.4	Exph5	chr9	protein_coding	exophilin 5
novel_NIR_20371	chr9	53303431	53305433	+	53303431	53310987	A3SS	ENSMUST00000214164.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000034487.5	Poglut3	chr9	protein_coding	protein O-glucosyltransferase 3
novel_NIR_20372	chr9	53445266	53447497	-	53445266	53447863	A5SS	ENSMUST00000232179.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	2	4	2	4	y	ENSMUSG00000034218.17	Atm	chr9	protein_coding	ataxia telangiectasia mutated
novel_NIR_20373	chr9	53578655	53585095	+	53578655	53592160	A3SS	ENSMUST00000146938.2	novel	0.18	4	18	4	18	y	0.11	2	16	2	16	n	0.16	3	16	3	16	y	0.08	2	23	2	23	n	0.07	2	27	2	27	n	0.06	1	16	1	16	n	0.00	0	26	0	26	n	0.08	1	11	1	11	n	0.12	3	22	3	22	n	0.08	4	45	4	45	n	0.10	3	27	3	27	n	0.10	4	36	4	36	n	ENSMUSG00000086914.2	Gm16124	chr9	lncRNA	predicted gene 16124
novel_NIR_20374	chr9	54305407	54306602	-	54305407	54307226	A5SS	ENSMUST00000118163.8	novel	0.27	3	8	3	8	y	0.00	0	6	0	6	n	0.00	0	26	0	26	n	0.00	0	15	0	15	n	0.00	0	24	0	24	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	26	0	26	n	0.00	0	11	0	11	n	0.00	0	17	0	17	n	ENSMUSG00000041268.18	Dmxl2	chr9	protein_coding	Dmx-like 2
novel_NIR_20375	chr9	54452768	54453171	-	54452768	54453173	A5SS	ENSMUST00000041901.7	novel	0.00	0	46	0	46	n	0.00	0	36	0	36	n	0.00	0	8	0	8	n	0.00	0	24	0	24	n	0.00	0	29	0	29	n	0.17	2	10	2	10	y	0.00	0	32	0	32	n	0.00	0	7	0	7	n	0.07	2	27	2	27	n	0.11	2	17	2	17	n	0.00	0	22	0	22	n	0.00	0	19	0	19	n	ENSMUSG00000037493.7	Cib2	chr9	protein_coding	calcium and integrin binding family member 2
novel_NIR_20376	chr9	54497180	54499678	+	54499539	54499678	A5SS&ES	ENSMUST00000215273.2	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	0.89	8	1	8	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	ENSMUSG00000032279.12	Idh3a	chr9	protein_coding	isocitrate dehydrogenase 3 (NAD+) alpha
novel_NIR_20377	chr9	54497204	54499483	+	54497204	54499445	A3SS	ENSMUST00000215273.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032279.12	Idh3a	chr9	protein_coding	isocitrate dehydrogenase 3 (NAD+) alpha
novel_NIR_20378	chr9	54499546	54499678	+	54499539	54499678	A5SS	ENSMUST00000215273.2	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032279.12	Idh3a	chr9	protein_coding	isocitrate dehydrogenase 3 (NAD+) alpha
novel_NIR_20379	chr9	54825142	54826925	+	54825142	54825531	3pMXE	ENSMUST00000135648.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.20	1	4	1	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000035878.14	Hykk	chr9	protein_coding	hydroxylysine kinase 1
novel_NIR_20380	chr9	54825142	54827362	+	54825142	54825531	3pMXE	ENSMUST00000135648.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.20	1	4	1	4	n	1.00	4	0	4	0	y	0.00	0	1	0	1	n	ENSMUSG00000035878.14	Hykk	chr9	protein_coding	hydroxylysine kinase 1
novel_NIR_20381	chr9	54858522	54858628	+	54858187	54858628	A5SS	ENSMUST00000172407.8	novel	0.14	1	6	1	6	n	0.00	0	3	0	3	n	0.00	0	29	0	29	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.10	1	9	1	9	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	ENSMUSG00000032301.14	Psma4	chr9	protein_coding	proteasome subunit alpha 4
novel_NIR_20382	chr9	55068179	55070252	+	55057685	55070252	A5SS	ENSMUST00000122441.2	novel	0.00	0	1	0	1	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.12	1	7	1	7	n	0.29	2	5	2	5	y	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.75	3	1	3	1	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	ENSMUSG00000032307.17	Ube2q2	chr9	protein_coding	ubiquitin-conjugating enzyme E2Q family member 2
novel_NIR_20383	chr9	55125616	55125718	+	55122282	55125718	A5SS	ENSMUST00000140375.8	novel	1.00	3	0	3	0	y	0.25	1	3	1	3	n	0.86	6	1	6	1	y	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	ENSMUSG00000032309.16	Fbxo22	chr9	protein_coding	F-box protein 22
novel_NIR_20384	chr9	55128896	55133900	-	55128692	55133900	A3SS	ENSMUST00000139261.8	novel	0.11	7	55	7	55	n	0.23	16	53	16	53	y	0.15	55	307	55	307	n	0.15	10	58	10	58	n	0.10	6	55	6	55	n	0.09	17	169	17	169	n	0.09	9	88	9	88	n	0.11	11	91	11	91	n	0.04	1	22	1	22	n	0.10	5	45	5	45	n	0.12	2	14	2	14	n	0.28	13	34	13	34	y	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
novel_NIR_20385	chr9	55128896	55133900	-	55132876	55133900	3pMXE	ENSMUST00000135531.2	novel	0.58	7	5	7	5	y	0.84	16	3	16	3	y	0.49	55	57	55	57	y	0.42	10	14	10	14	y	0.43	6	8	6	8	y	0.30	17	40	17	40	y	0.43	9	12	9	12	y	0.35	11	20	11	20	y	0.33	1	2	1	2	n	0.36	5	9	5	9	y	0.40	2	3	2	3	y	0.87	13	2	13	2	y	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
novel_NIR_20386	chr9	55149491	55152375	-	55149491	55149664	5pMXE	ENSMUST00000144939.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.45	5	6	5	6	y	0.00	0	3	0	3	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
novel_NIR_20387	chr9	55149491	55152375	-	55149491	55226877	A5SS	ENSMUST00000156112.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	5	0	5	0	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
novel_NIR_20388	chr9	55149491	55165761	-	55149491	55149664	5pMXE	ENSMUST00000144939.8	novel	0.33	1	2	1	2	n	1.00	1	0	1	0	n	0.73	16	6	16	6	y	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	5	0	5	0	y	0.33	1	2	1	2	n	0.75	3	1	3	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
novel_NIR_20389	chr9	55149491	55165761	-	55149491	55156380	A5SS&ES	ENSMUST00000139261.8	novel	0.05	1	20	1	20	n	0.04	1	24	1	24	n	0.17	16	76	16	76	y	0.00	0	17	0	17	n	0.00	0	37	0	37	n	0.06	5	75	5	75	n	0.03	1	36	1	36	n	0.08	3	36	3	36	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	14	0	14	n	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
novel_NIR_20390	chr9	55149491	55165761	-	55149491	55188174	A5SS	ENSMUST00000164721.8	novel	0.25	1	3	1	3	n	0.09	1	10	1	10	n	0.28	16	41	16	41	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.19	5	22	5	22	y	0.08	1	12	1	12	n	0.18	3	14	3	14	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	11	0	11	n	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
novel_NIR_20391	chr9	55149491	55165761	-	55149491	55226877	A5SS	ENSMUST00000156112.8	novel	1.00	1	0	1	0	n	0.50	1	1	1	1	n	1.00	16	0	16	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
novel_NIR_20392	chr9	55149491	55165761	-	55149491;55156453	55156380;55165761	ES	ENSMUST00000145784.8	novel	0.08	1	11.5	1	20;3	n	0.08	1	12.0	1	24;0	n	0.24	16	49.5	16	76;23	y	0.00	0	8.5	0	17;0	n	0.00	0	23.5	0	37;10	n	0.10	5	47.0	5	75;19	n	0.05	1	19.5	1	36;3	n	0.12	3	22.5	3	36;9	n	0.00	0	4.5	0	7;2	n	0.00	0	5.0	0	8;2	n	0.00	0	2.5	0	5;0	n	0.00	0	8.0	0	14;2	n	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
novel_NIR_20393	chr9	55149491	55165761	-	55156453	55165761	3pMXE	ENSMUST00000128020.2	novel	0.25	1	3	1	3	n	1.00	1	0	1	0	n	0.41	16	23	16	23	y	-	-	-	-	-	-	0.00	0	10	0	10	n	0.21	5	19	5	19	y	0.25	1	3	1	3	n	0.25	3	9	3	9	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
novel_NIR_20394	chr9	55149491	55189825	-	55149491	55149664	5pMXE	ENSMUST00000144939.8	novel	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.77	20	6	20	6	y	0.25	1	3	1	3	n	1.00	3	0	3	0	y	1.00	15	0	15	0	y	0.60	3	2	3	2	y	0.88	7	1	7	1	y	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
novel_NIR_20395	chr9	55149491	55189825	-	55149491	55156380	A5SS&ES	ENSMUST00000139261.8	novel	0.00	0	20	0	20	n	0.04	1	24	1	24	n	0.21	20	76	20	76	y	0.06	1	17	1	17	n	0.07	3	37	3	37	n	0.17	15	75	15	75	y	0.08	3	36	3	36	n	0.16	7	36	7	36	y	0.00	0	7	0	7	n	0.20	2	8	2	8	y	0.00	0	5	0	5	n	0.00	0	14	0	14	n	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
novel_NIR_20396	chr9	55149491	55189825	-	55149491	55188174	A5SS&ES	ENSMUST00000164721.8	novel	0.00	0	3	0	3	n	0.09	1	10	1	10	n	0.33	20	41	20	41	y	0.12	1	7	1	7	n	0.43	3	4	3	4	y	0.41	15	22	15	22	y	0.20	3	12	3	12	y	0.33	7	14	7	14	y	0.00	0	2	0	2	n	0.29	2	5	2	5	y	-	-	-	-	-	-	0.00	0	11	0	11	n	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
novel_NIR_20397	chr9	55149491	55189825	-	55149491	55226877	A5SS	ENSMUST00000156112.8	novel	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	20	0	20	0	y	0.50	1	1	1	1	n	1.00	3	0	3	0	y	1.00	15	0	15	0	y	1.00	3	0	3	0	y	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
novel_NIR_20398	chr9	55149491	55189835	-	55149491	55149664	5pMXE	ENSMUST00000144939.8	novel	0.86	12	2	12	2	y	1.00	6	0	6	0	y	0.91	60	6	60	6	y	0.77	10	3	10	3	y	1.00	19	0	19	0	y	1.00	20	0	20	0	y	0.90	18	2	18	2	y	0.93	14	1	14	1	y	1.00	7	0	7	0	y	0.50	2	2	2	2	y	1.00	1	0	1	0	n	1.00	12	0	12	0	y	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
novel_NIR_20399	chr9	55149491	55189835	-	55149491	55156380	A5SS&ES	ENSMUST00000137675.8	novel	0.38	12	20	12	20	y	0.20	6	24	6	24	y	0.44	60	76	60	76	y	0.37	10	17	10	17	y	0.34	19	37	19	37	y	0.21	20	75	20	75	y	0.33	18	36	18	36	y	0.28	14	36	14	36	y	0.50	7	7	7	7	y	0.20	2	8	2	8	y	0.17	1	5	1	5	n	0.46	12	14	12	14	y	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
novel_NIR_20400	chr9	55149491	55189835	-	55149491	55226877	A5SS	ENSMUST00000156112.8	novel	1.00	12	0	12	0	y	0.86	6	1	6	1	y	1.00	60	0	60	0	y	0.91	10	1	10	1	y	1.00	19	0	19	0	y	1.00	20	0	20	0	y	1.00	18	0	18	0	y	1.00	14	0	14	0	y	1.00	7	0	7	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	12	0	12	0	y	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
novel_NIR_20401	chr9	55149491	55189835	-	55149491;55156453	55156380;55189835	ES	ENSMUST00000139261.8	novel	0.42	12	16.5	12	20;13	y	0.26	6	17.5	6	24;11	y	0.51	60	58.0	60	76;40	y	0.42	10	14.0	10	17;11	y	0.42	19	26.5	19	37;16	y	0.28	20	52.0	20	75;29	y	0.42	18	24.5	18	36;13	y	0.34	14	27.5	14	36;19	y	0.58	7	5.0	7	7;3	y	0.27	2	5.5	2	8;3	y	0.25	1	3.0	1	5;1	n	0.60	12	8.0	12	14;2	y	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
novel_NIR_20402	chr9	55149491	55189835	-	55149491;55188267	55188174;55189835	ES	ENSMUST00000164721.8	novel	0.69	12	5.5	12	3;8	y	0.43	6	8.0	6	10;6	y	0.54	60	51.0	60	41;61	y	0.54	10	8.5	10	7;10	y	0.72	19	7.5	19	4;11	y	0.39	20	31.0	20	22;40	y	0.54	18	15.5	18	12;19	y	0.49	14	14.5	14	14;15	y	0.74	7	2.5	7	2;3	y	0.20	2	8.0	2	5;11	y	0.40	1	1.5	1	0;3	n	0.67	12	6.0	12	11;1	y	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
novel_NIR_20403	chr9	55149491;55165908	55165761;55188174	-	55149491	55188174	cassetteExon	ENSMUST00000164721.8	novel	0.25	1.0	3	1;1	3	n	0.05	0.5	10	1;0	10	n	0.26	14.5	41	16;13	41	y	0.07	0.5	7	0;1	7	n	0.11	0.5	4	0;1	4	n	0.10	2.5	22	5;0	22	n	0.04	0.5	12	1;0	12	n	0.12	2.0	14	3;1	14	n	0.00	0.0	2	0;0	2	n	0.09	0.5	5	0;1	5	n	-	-	-	-	-	-	0.00	0.0	11	0;0	11	n	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
novel_NIR_20404	chr9	55149491;55165908	55165761;55188174	-	55149491;55156453	55156380;55188174	MXE	ENSMUST00000137675.8	novel	0.07	1.0	12.5	1;1	20;5	n	0.03	0.5	15.5	1;0	24;7	n	0.23	14.5	49.0	16;13	76;22	y	0.05	0.5	10.5	0;1	17;4	n	0.02	0.5	21.0	0;1	37;5	n	0.05	2.5	44.5	5;0	75;14	n	0.02	0.5	22.5	1;0	36;9	n	0.08	2.0	24.0	3;1	36;12	n	0.00	0.0	4.5	0;0	7;2	n	0.06	0.5	8.0	0;1	8;8	n	0.00	0.0	3.0	0;0	5;1	n	0.00	0.0	7.5	0;0	14;1	n	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
novel_NIR_20405	chr9	55156453	55189825	-	55156453	55165761	A5SS&ES	ENSMUST00000145784.8	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	23	0	23	n	-	-	-	-	-	-	0.17	2	10	2	10	y	0.39	12	19	12	19	y	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	4	2	4	2	y	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
novel_NIR_20406	chr9	55156453	55189825	-	55156453	55189835	A5SS	ENSMUST00000139261.8	novel	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	40	0	40	n	0.00	0	11	0	11	n	0.11	2	16	2	16	n	0.29	12	29	12	29	y	0.00	0	13	0	13	n	0.00	0	19	0	19	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.67	4	2	4	2	y	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
novel_NIR_20407	chr9	55156453	55189825	-	55156453	55190781	A5SS	ENSMUST00000126368.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.92	12	1	12	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
novel_NIR_20408	chr9	55156453	55189825	-	55156453;55188267	55188174;55189825	ES	ENSMUST00000137675.8	novel	0.00	0	2.5	0	5;0	n	0.00	0	5.0	0	7;3	n	0.00	0	18.5	0	22;15	n	0.00	0	4.5	0	4;5	n	0.40	2	3.0	2	5;1	y	0.49	12	12.5	12	14;11	y	0.00	0	5.0	0	9;1	n	0.00	0	8.0	0	12;4	n	0.00	0	1.0	0	2;0	n	0.00	0	5.5	0	8;3	n	0.00	0	0.5	0	1;0	n	0.89	4	0.5	4	1;0	y	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
novel_NIR_20409	chr9	55165908	55188174	-	55165908	55166656	A5SS&ES	ENSMUST00000134183.2	novel	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.42	13	18	13	18	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	21	0	21	n	0.00	0	7	0	7	n	0.11	1	8	1	8	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
novel_NIR_20410	chr9	55165908	55188174	-	55165908	55189835	A5SS	ENSMUST00000128020.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.54	13	11	13	11	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
novel_NIR_20411	chr9	55165908	55188174	-	55165908;55166764	55166656;55188174	ES	ENSMUST00000145784.8	novel	0.50	1	1.0	1	2;0	n	0.00	0	1.5	0	3;0	n	0.51	13	12.5	13	18;7	y	0.40	1	1.5	1	0;3	n	1.00	1	0.0	1	0;0	n	0.00	0	11.0	0	21;1	n	0.00	0	5.0	0	7;3	n	0.15	1	5.5	1	8;3	n	0.00	0	1.0	0	2;0	n	0.67	1	0.5	1	0;1	n	-	-	-	-	-	-	0.00	0	2.5	0	3;2	n	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
novel_NIR_20412	chr9	55165908	55189825	-	55165908	55189835	A5SS	ENSMUST00000128020.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	11	0	11	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	3	3	3	3	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
novel_NIR_20413	chr9	55165908	55189825	-	55165908;55166764	55166656;55189825	ES	ENSMUST00000134183.2	novel	0.50	1	1.0	1	2;0	n	0.00	0	1.5	0	3;0	n	0.00	0	9.0	0	18;0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.22	3	10.5	3	21;0	y	0.00	0	4.5	0	7;2	n	0.00	0	4.0	0	8;0	n	0.00	0	2.0	0	2;2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1.5	0	3;0	n	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
novel_NIR_20414	chr9	55166764	55189835	-	55165908	55189835	A3SS	ENSMUST00000128020.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.35	6	11	6	11	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	3	0	3	0	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
novel_NIR_20415	chr9	55166764	55189835	-	55166764	55189825	A5SS	ENSMUST00000134183.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
novel_NIR_20416	chr9	55166764	55189835	-	55166764;55188267	55188174;55189835	ES	ENSMUST00000145784.8	novel	0.00	0	4.0	0	0;8	n	0.00	0	3.0	0	0;6	n	0.15	6	34.0	6	7;61	y	0.13	1	6.5	1	3;10	n	0.00	0	5.5	0	0;11	n	0.00	0	20.5	0	1;40	n	0.00	0	11.0	0	3;19	n	0.25	3	9.0	3	3;15	y	0.00	0	1.5	0	0;3	n	0.14	1	6.0	1	1;11	n	0.00	0	1.5	0	0;3	n	0.00	0	1.5	0	2;1	n	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
novel_NIR_20417	chr9	55166764	55189835	-	55188267	55189835	A3SS&ES	ENSMUST00000164721.8	novel	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.09	6	61	6	61	n	0.09	1	10	1	10	n	0.00	0	11	0	11	n	0.00	0	40	0	40	n	0.00	0	19	0	19	n	0.17	3	15	3	15	y	0.00	0	3	0	3	n	0.08	1	11	1	11	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
novel_NIR_20418	chr9	55189900	55190308	-	55189900	55226877	A5SS	ENSMUST00000130158.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
novel_NIR_20419	chr9	55189900	55190516	-	55189900	55226877	A5SS	ENSMUST00000130158.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
novel_NIR_20420	chr9	55189900	55190717	-	55189900	55226877	A5SS	ENSMUST00000130158.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000032311.18	Nrg4	chr9	protein_coding	neuregulin 4
novel_NIR_20421	chr9	55288151	55303680	+	55288151	55303788	A3SS	ENSMUST00000085754.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000032313.12	Tmem266	chr9	protein_coding	transmembrane protein 266
novel_NIR_20422	chr9	55288151	55303680	+	55288151	55305025	A3SS	ENSMUST00000034862.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000032313.12	Tmem266	chr9	protein_coding	transmembrane protein 266
novel_NIR_20423	chr9	55305073	55307858	+	55305179	55307858	A5SS	ENSMUST00000085754.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.29	2	5	2	5	y	0.00	0	3	0	3	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000032313.12	Tmem266	chr9	protein_coding	transmembrane protein 266
novel_NIR_20424	chr9	55368984	55389557	-	55381939	55389557	3pMXE	ENSMUST00000139342.2	novel	0.00	0	48	0	48	n	0.03	2	57	2	57	n	0.16	7	37	7	37	y	0.08	4	44	4	44	n	0.00	0	54	0	54	n	0.00	0	16	0	16	n	1.00	5	0	5	0	y	0.25	5	15	5	15	y	-	-	-	-	-	-	0.13	10	65	10	65	n	0.19	11	47	11	47	y	0.09	7	70	7	70	n	ENSMUSG00000032314.15	Etfa	chr9	protein_coding	electron transferring flavoprotein, alpha polypeptide
novel_NIR_20425	chr9	55407448	55416597	-	55407448	55408276	A5SS&ES	ENSMUST00000153186.8	novel	1.00	1	0	1	0	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	12	0	12	n	0.00	0	1	0	1	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	10	0	10	n	0.33	2	4	2	4	y	0.00	0	8	0	8	n	ENSMUSG00000032314.15	Etfa	chr9	protein_coding	electron transferring flavoprotein, alpha polypeptide
novel_NIR_20426	chr9	55407448	55418230	-	55407448	55408276	A5SS&ES	ENSMUST00000153186.8	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	12	0	12	n	0.00	0	1	0	1	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.17	2	10	2	10	y	0.00	0	4	0	4	n	0.00	0	8	0	8	n	ENSMUSG00000032314.15	Etfa	chr9	protein_coding	electron transferring flavoprotein, alpha polypeptide
novel_NIR_20427	chr9	55407448	55418230	-	55407448	55418931	A5SS	ENSMUST00000142587.2	novel	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.17	2	10	2	10	y	0.00	0	14	0	14	n	0.00	0	11	0	11	n	ENSMUSG00000032314.15	Etfa	chr9	protein_coding	electron transferring flavoprotein, alpha polypeptide
novel_NIR_20428	chr9	55408430	55418931	-	55407448	55418931	A3SS	ENSMUST00000142587.2	novel	0.15	2	11	2	11	y	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	11	0	11	n	ENSMUSG00000032314.15	Etfa	chr9	protein_coding	electron transferring flavoprotein, alpha polypeptide
novel_NIR_20429	chr9	55408430	55418931	-	55408430	55419315	A5SS	ENSMUST00000153186.8	novel	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	ENSMUSG00000032314.15	Etfa	chr9	protein_coding	electron transferring flavoprotein, alpha polypeptide
novel_NIR_20430	chr9	56858237	56863078	+	56858237	56864298	A3SS	ENSMUST00000068856.5	novel	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.18	2	9	2	9	y	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	ENSMUSG00000055334.5	Snupn	chr9	protein_coding	snurportin 1
novel_NIR_20431	chr9	56902940	56922172	+	56902940	56903766	3pMXE	ENSMUST00000213500.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	ENSMUSG00000032290.8	Ptpn9	chr9	protein_coding	protein tyrosine phosphatase, non-receptor type 9
novel_NIR_20432	chr9	56964422	56964950	-	56964422	56964553	A5SS	ENSMUST00000128125.2	novel	0.15	4	23	4	23	y	0.07	3	43	3	43	n	0.00	0	17	0	17	n	0.30	10	23	10	23	y	0.16	7	38	7	38	y	0.10	1	9	1	9	n	0.07	3	38	3	38	n	0.12	2	15	2	15	n	0.07	2	26	2	26	n	0.09	3	32	3	32	n	0.22	6	21	6	21	y	0.24	7	22	7	22	y	ENSMUSG00000074284.7	Gm10658	chr9	lncRNA	predicted gene 10658
novel_NIR_20433	chr9	56979500	56993865	+	56979347	56993865	A5SS	ENSMUST00000169879.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	2	4	2	4	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.25	1	3	1	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000042557.15	Sin3a	chr9	protein_coding	transcriptional regulator, SIN3A (yeast)
novel_NIR_20434	chr9	56979500	56993865	+	56983914	56993865	5pMXE	ENSMUST00000168177.8	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000042557.15	Sin3a	chr9	protein_coding	transcriptional regulator, SIN3A (yeast)
novel_NIR_20435	chr9	57040876	57041058	+	57040876	57041417	A3SS	ENSMUST00000161393.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	2	1	2	1	n	ENSMUSG00000032295.16	Man2c1	chr9	protein_coding	mannosidase, alpha, class 2C, member 1
novel_NIR_20436	chr9	57040876	57041779	+	57040876	57041417	3pMXE	ENSMUST00000161393.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000032295.16	Man2c1	chr9	protein_coding	mannosidase, alpha, class 2C, member 1
novel_NIR_20437	chr9	57046992	57047138	+	57046992	57047154	A3SS	ENSMUST00000160147.8	novel	0.03	1	34	1	34	n	0.15	4	22	4	22	y	0.00	0	33	0	33	n	0.11	2	16	2	16	n	0.03	2	57	2	57	n	0.06	1	17	1	17	n	0.02	1	42	1	42	n	0.05	1	21	1	21	n	0.00	0	36	0	36	n	0.00	0	50	0	50	n	0.03	1	31	1	31	n	0.00	0	41	0	41	n	ENSMUSG00000032295.16	Man2c1	chr9	protein_coding	mannosidase, alpha, class 2C, member 1
novel_NIR_20438	chr9	57046992	57047138	+	57046992	57047483	A3SS	ENSMUST00000159101.2	novel	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000032295.16	Man2c1	chr9	protein_coding	mannosidase, alpha, class 2C, member 1
novel_NIR_20439	chr9	57047387	57047483	+	57046992	57047483	A5SS	ENSMUST00000159101.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000032295.16	Man2c1	chr9	protein_coding	mannosidase, alpha, class 2C, member 1
novel_NIR_20440	chr9	57050897	57051263	-	57050897;57051103	57051042;57051263	ES	ENSMUST00000190245.7	novel	0.00	0	16.0	0	13;19	n	0.21	4	15.0	4	14;16	y	0.09	1	10.5	1	10;11	n	0.00	0	25.5	0	24;27	n	0.04	1	22.5	1	19;26	n	0.00	0	9.5	0	12;7	n	0.19	3	12.5	3	14;11	y	0.00	0	14.0	0	16;12	n	0.00	0	8.0	0	6;10	n	0.05	1	21.0	1	20;22	n	0.00	0	24.0	0	19;29	n	0.00	0	14.5	0	15;14	n	ENSMUSG00000032298.14	Neil1	chr9	protein_coding	nei endonuclease VIII-like 1 (E. coli)
novel_NIR_20441	chr9	57051323	57051471	-	57051290	57051471	A3SS	ENSMUST00000190245.7	novel	0.10	3	26	3	26	n	0.00	0	19	0	19	n	0.00	0	11	0	11	n	0.12	4	29	4	29	n	0.03	1	31	1	31	n	0.00	0	5	0	5	n	0.00	0	19	0	19	n	0.18	2	9	2	9	y	0.06	1	15	1	15	n	0.00	0	31	0	31	n	0.03	1	34	1	34	n	0.00	0	18	0	18	n	ENSMUSG00000032298.14	Neil1	chr9	protein_coding	nei endonuclease VIII-like 1 (E. coli)
novel_NIR_20442	chr9	57063298	57063456	-	57063295	57063456	A3SS	ENSMUST00000214174.2	novel	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.33	2	4	2	4	y	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	ENSMUSG00000032299.11	Commd4	chr9	protein_coding	COMM domain containing 4
novel_NIR_20443	chr9	57063298	57063456	-	57063317	57063456	A3SS	ENSMUST00000215013.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032299.11	Commd4	chr9	protein_coding	COMM domain containing 4
novel_NIR_20444	chr9	57063298	57063456	-	57063348	57063456	A3SS	ENSMUST00000213580.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032299.11	Commd4	chr9	protein_coding	COMM domain containing 4
novel_NIR_20445	chr9	57063518	57063800	-	57063266	57063800	A3SS	ENSMUST00000217018.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000032299.11	Commd4	chr9	protein_coding	COMM domain containing 4
novel_NIR_20446	chr9	57166423	57195335	-	57166423	57168504	5pMXE	ENSMUST00000217657.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032300.8	1700017B05Rik	chr9	protein_coding	RIKEN cDNA 1700017B05 gene
novel_NIR_20447	chr9	57322009	57327446	-	57306128	57327446	A3SS	ENSMUST00000215961.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000063849.7	Ppcdc	chr9	protein_coding	phosphopantothenoylcysteine decarboxylase
novel_NIR_20448	chr9	57322009	57327446	-	57322009	57342186	A5SS	ENSMUST00000214339.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	1	0	1	0	n	ENSMUSG00000063849.7	Ppcdc	chr9	protein_coding	phosphopantothenoylcysteine decarboxylase
novel_NIR_20449	chr9	57322009	57327446	-	57322537	57327446	3pMXE	ENSMUST00000214065.2	novel	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.09	2	20	2	20	n	0.17	3	15	3	15	y	0.20	1	4	1	4	n	0.00	0	21	0	21	n	0.22	2	7	2	7	y	0.13	2	13	2	13	n	0.00	0	19	0	19	n	0.05	1	18	1	18	n	0.07	1	14	1	14	n	ENSMUSG00000063849.7	Ppcdc	chr9	protein_coding	phosphopantothenoylcysteine decarboxylase
novel_NIR_20450	chr9	57328504	57340884	-	57328504	57332215	5pMXE	ENSMUST00000214519.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000063849.7	Ppcdc	chr9	protein_coding	phosphopantothenoylcysteine decarboxylase
novel_NIR_20451	chr9	57341114	57342186	-	57306128	57342186	A3SS	ENSMUST00000214166.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000063849.7	Ppcdc	chr9	protein_coding	phosphopantothenoylcysteine decarboxylase
novel_NIR_20452	chr9	57341114	57342186	-	57316297	57342186	A3SS	ENSMUST00000214624.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000063849.7	Ppcdc	chr9	protein_coding	phosphopantothenoylcysteine decarboxylase
novel_NIR_20453	chr9	57341114	57342186	-	57322009	57342186	A3SS	ENSMUST00000214339.2	novel	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000063849.7	Ppcdc	chr9	protein_coding	phosphopantothenoylcysteine decarboxylase
novel_NIR_20454	chr9	57341114	57342186	-	57322537	57342186	A3SS	ENSMUST00000215883.2	novel	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000063849.7	Ppcdc	chr9	protein_coding	phosphopantothenoylcysteine decarboxylase
novel_NIR_20455	chr9	57341114	57342186	-	57327574	57342186	A3SS	ENSMUST00000215299.2	novel	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000063849.7	Ppcdc	chr9	protein_coding	phosphopantothenoylcysteine decarboxylase
novel_NIR_20456	chr9	57344765	57345281	-	57344765	57347353	A5SS	ENSMUST00000214144.2	novel	0.25	1	3	1	3	n	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.08	1	12	1	12	n	0.00	0	8	0	8	n	0.33	1	2	1	2	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.15	2	11	2	11	y	ENSMUSG00000063849.7	Ppcdc	chr9	protein_coding	phosphopantothenoylcysteine decarboxylase
novel_NIR_20457	chr9	57446171	57447941	+	57446171	57446529	A3SS&ES	ENSMUST00000114200.10	novel	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.14	1	6	1	6	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	ENSMUSG00000032305.16	Fam219b	chr9	protein_coding	family with sequence similarity 219, member B
novel_NIR_20458	chr9	57446171	57447941	+	57446171	57447938	A3SS	ENSMUST00000093833.6	novel	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.33	2	4	2	4	y	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	ENSMUSG00000032305.16	Fam219b	chr9	protein_coding	family with sequence similarity 219, member B
novel_NIR_20459	chr9	57498036	57498497	+	57498064	57498497	A5SS	ENSMUST00000053230.7	novel	0.18	3	14	3	14	y	0.08	1	11	1	11	n	0.00	0	26	0	26	n	0.05	1	18	1	18	n	0.09	3	30	3	30	n	0.20	3	12	3	12	y	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.07	1	13	1	13	n	0.00	0	15	0	15	n	0.15	3	17	3	17	y	0.00	0	17	0	17	n	ENSMUSG00000032308.10	Ulk3	chr9	protein_coding	unc-51-like kinase 3
novel_NIR_20460	chr9	57501136	57501228	+	57501136	57501265	A3SS	ENSMUST00000053230.7	novel	0.06	1	17	1	17	n	0.00	0	20	0	20	n	0.00	0	28	0	28	n	0.00	0	19	0	19	n	0.12	3	22	3	22	n	0.10	1	9	1	9	n	0.04	1	24	1	24	n	0.11	2	16	2	16	n	0.24	4	13	4	13	y	0.09	2	20	2	20	n	0.08	1	12	1	12	n	0.00	0	22	0	22	n	ENSMUSG00000032308.10	Ulk3	chr9	protein_coding	unc-51-like kinase 3
novel_NIR_20461	chr9	57538726	57551329	-	57538726	57552848	A5SS	ENSMUST00000216979.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000032312.8	Csk	chr9	protein_coding	c-src tyrosine kinase
novel_NIR_20462	chr9	57669150	57670271	-	57669150	57671761	A5SS	ENSMUST00000215158.2	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	9	0	9	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000032316.9	Clk3	chr9	protein_coding	CDC-like kinase 3
novel_NIR_20463	chr9	57669150	57670271	-	57669150	57672357	A5SS	ENSMUST00000216095.2	novel	0.08	2	24	2	24	n	0.00	0	23	0	23	n	0.00	0	33	0	33	n	0.02	1	40	1	40	n	0.18	9	42	9	42	y	0.00	0	24	0	24	n	0.00	0	21	0	21	n	0.00	0	14	0	14	n	0.00	0	19	0	19	n	0.00	0	35	0	35	n	0.00	0	25	0	25	n	0.03	1	36	1	36	n	ENSMUSG00000032316.9	Clk3	chr9	protein_coding	CDC-like kinase 3
novel_NIR_20464	chr9	57669150	57671728	-	57669150	57671761	A5SS	ENSMUST00000215158.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000032316.9	Clk3	chr9	protein_coding	CDC-like kinase 3
novel_NIR_20465	chr9	57669150	57672320	-	57669150	57671761	5pMXE	ENSMUST00000215158.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032316.9	Clk3	chr9	protein_coding	CDC-like kinase 3
novel_NIR_20466	chr9	57826388	57826592	+	57824926	57826592	A5SS	ENSMUST00000217180.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000055720.11	Ubl7	chr9	protein_coding	ubiquitin-like 7 (bone marrow stromal cell-derived)
novel_NIR_20467	chr9	58133640	58136638	-	58127847	58136638	A3SS	ENSMUST00000154572.2	novel	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036986.17	Pml	chr9	protein_coding	promyelocytic leukemia
novel_NIR_20468	chr9	58133640	58136638	-	58127852	58136638	A3SS	ENSMUST00000148628.8	novel	0.00	0	5	0	5	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000036986.17	Pml	chr9	protein_coding	promyelocytic leukemia
novel_NIR_20469	chr9	58438013	58438871	-	58438013	58442739	A5SS	ENSMUST00000165365.3	novel	0.33	2	4	2	4	y	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000035914.12	Cd276	chr9	protein_coding	CD276 antigen
novel_NIR_20470	chr9	58438013	58438871	-	58438013	58447950	A5SS	ENSMUST00000216629.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035914.12	Cd276	chr9	protein_coding	CD276 antigen
novel_NIR_20471	chr9	58573199	58648670	-	58573199	58619299	A5SS&ES	ENSMUST00000186960.2	novel	0.00	0	13	0	13	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	19	0	19	n	0.20	2	8	2	8	y	ENSMUSG00000074269.11	Rec114	chr9	protein_coding	REC114 meiotic recombination protein
novel_NIR_20472	chr9	58573199	58648670	-	58573199;58619388	58619299;58648670	ES	ENSMUST00000098674.6	novel	0.00	0	8.0	0	13;3	n	0.00	0	5.0	0	6;4	n	-	-	-	-	-	-	0.00	0	4.5	0	5;4	n	0.00	0	5.5	0	6;5	n	0.00	0	3.5	0	5;2	n	0.00	0	6.5	0	9;4	n	0.00	0	2.0	0	2;2	n	0.00	0	4.0	0	3;5	n	0.00	0	6.0	0	5;7	n	0.00	0	13.0	0	19;7	n	0.29	2	5.0	2	8;2	y	ENSMUSG00000074269.11	Rec114	chr9	protein_coding	REC114 meiotic recombination protein
novel_NIR_20473	chr9	58788138	58795684	-	58788138;58791911	58791753;58795684	ES	ENSMUST00000068664.7	novel	0.19	4	17.5	4	22;13	y	0.22	4	14.0	4	13;15	y	0.00	0	24.0	0	24;24	n	0.04	1	21.5	1	20;23	n	0.18	4	18.5	4	18;19	y	0.00	0	10.0	0	12;8	n	0.15	3	17.0	3	15;19	y	0.13	2	13.5	2	19;8	n	0.00	0	17.0	0	21;13	n	0.19	5	21.0	5	24;18	y	0.13	2	13.0	2	14;12	n	0.05	1	18.0	1	28;8	n	ENSMUSG00000032340.9	Neo1	chr9	protein_coding	neogenin
novel_NIR_20474	chr9	59249851	59251343	-	59249834	59251343	A3SS	ENSMUST00000026265.8	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.43	3	4	3	4	y	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000025235.9	Bbs4	chr9	protein_coding	Bardet-Biedl syndrome 4 (human)
novel_NIR_20475	chr9	59361752	59375080	-	59361752	59393499	A5SS	ENSMUST00000165322.2	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000025234.12	Arih1	chr9	protein_coding	ariadne RBR E3 ubiquitin protein ligase 1
novel_NIR_20476	chr9	59547095	59547320	+	59547095	59547323	A3SS	ENSMUST00000026267.16	novel	0.24	5	16	5	16	y	0.16	6	32	6	32	y	0.20	5	20	5	20	y	0.17	4	19	4	19	y	0.12	5	35	5	35	n	0.00	0	14	0	14	n	0.22	8	29	8	29	y	0.13	2	13	2	13	n	0.25	4	12	4	12	y	0.23	8	27	8	27	y	0.12	4	28	4	28	n	0.21	8	30	8	30	y	ENSMUSG00000025237.17	Parp6	chr9	protein_coding	poly (ADP-ribose) polymerase family, member 6
novel_NIR_20477	chr9	59548379	59548991	+	59548379	59549024	A3SS	ENSMUST00000026267.16	novel	1.00	2	0	2	0	y	0.50	2	2	2	2	y	0.33	1	2	1	2	n	0.80	4	1	4	1	y	0.50	3	3	3	3	y	0.25	1	3	1	3	n	0.83	5	1	5	1	y	1.00	1	0	1	0	n	0.17	1	5	1	5	n	0.17	1	5	1	5	n	0.50	2	2	2	2	y	0.60	3	2	3	2	y	ENSMUSG00000025237.17	Parp6	chr9	protein_coding	poly (ADP-ribose) polymerase family, member 6
novel_NIR_20478	chr9	59548379	59548991	+	59548379	59556113	A3SS	ENSMUST00000216351.2	novel	0.10	2	18	2	18	n	0.13	2	13	2	13	n	0.08	1	11	1	11	n	0.21	4	15	4	15	y	0.13	3	20	3	20	n	0.10	1	9	1	9	n	0.19	5	22	5	22	y	0.17	1	5	1	5	n	0.09	1	10	1	10	n	0.04	1	22	1	22	n	0.14	2	12	2	12	n	0.27	3	8	3	8	y	ENSMUSG00000025237.17	Parp6	chr9	protein_coding	poly (ADP-ribose) polymerase family, member 6
novel_NIR_20479	chr9	59548379	59549406	+	59548379	59549024	A3SS&ES	ENSMUST00000026267.16	novel	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	ENSMUSG00000025237.17	Parp6	chr9	protein_coding	poly (ADP-ribose) polymerase family, member 6
novel_NIR_20480	chr9	59548379	59549406	+	59548379	59556113	A3SS	ENSMUST00000216351.2	novel	0.14	3	18	3	18	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	20	0	20	n	0.10	1	9	1	9	n	0.00	0	22	0	22	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	22	0	22	n	0.00	0	12	0	12	n	0.20	2	8	2	8	y	ENSMUSG00000025237.17	Parp6	chr9	protein_coding	poly (ADP-ribose) polymerase family, member 6
novel_NIR_20481	chr9	59695797	59709197	+	59695797;59697375	59697319;59709197	ES	ENSMUST00000136740.8	novel	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	0.5	0	0;1	n	0.57	2	1.5	2	1;2	y	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	0.00	0	0.5	0	0;1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	ENSMUSG00000039585.16	Myo9a	chr9	protein_coding	myosin IXa
novel_NIR_20482	chr9	59796838	59802044	+	59796838;59801647	59801424;59802044	ES	ENSMUST00000136740.8	novel	0.00	0	3.0	0	2;4	n	0.00	0	1.5	0	1;2	n	0.60	3	2.0	3	2;2	y	0.00	0	1.5	0	1;2	n	0.00	0	4.0	0	7;1	n	0.00	0	0.5	0	1;0	n	0.00	0	1.0	0	2;0	n	0.00	0	5.0	0	2;8	n	0.00	0	1.5	0	1;2	n	0.00	0	1.0	0	0;2	n	-	-	-	-	-	-	0.00	0	4.5	0	6;3	n	ENSMUSG00000039585.16	Myo9a	chr9	protein_coding	myosin IXa
novel_NIR_20483	chr9	59817990	59829061	+	59817990	59819820	A3SS&ES	ENSMUST00000136740.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000039585.16	Myo9a	chr9	protein_coding	myosin IXa
novel_NIR_20484	chr9	59817990	59829061	+	59817990	59829006	A3SS	ENSMUST00000135298.8	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	4	0	4	n	ENSMUSG00000039585.16	Myo9a	chr9	protein_coding	myosin IXa
novel_NIR_20485	chr9	60745438	60748122	+	60701974	60748122	A5SS	ENSMUST00000214354.2	novel	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.14	2	12	2	12	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.20	1	4	1	4	n	0.00	0	6	0	6	n	ENSMUSG00000034485.11	Uaca	chr9	protein_coding	uveal autoantigen with coiled-coil domains and ankyrin repeats
novel_NIR_20486	chr9	62252275	62279002	+	62248633	62279002	A5SS	ENSMUST00000138226.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	10	0	10	0	y	-	-	-	-	-	-	1.00	12	0	12	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000032249.15	Anp32a	chr9	protein_coding	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
novel_NIR_20487	chr9	62252275	62279002	+	62249292	62279002	A5SS	ENSMUST00000128636.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.91	10	1	10	1	y	-	-	-	-	-	-	1.00	12	0	12	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000032249.15	Anp32a	chr9	protein_coding	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
novel_NIR_20488	chr9	62252275	62279002	+	62249533	62279002	A5SS	ENSMUST00000135395.8	novel	0.00	0	16	0	16	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	18	0	18	n	0.28	10	26	10	26	y	0.00	0	5	0	5	n	0.57	12	9	12	9	y	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.00	0	18	0	18	n	ENSMUSG00000032249.15	Anp32a	chr9	protein_coding	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
novel_NIR_20489	chr9	62252275	62279002	+	62249785	62279002	A5SS	ENSMUST00000156461.2	novel	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.59	10	7	10	7	y	0.00	0	1	0	1	n	0.57	12	9	12	9	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	ENSMUSG00000032249.15	Anp32a	chr9	protein_coding	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
novel_NIR_20490	chr9	62252275	62279002	+	62251494	62279002	A5SS	ENSMUST00000141277.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	10	0	10	0	y	-	-	-	-	-	-	1.00	12	0	12	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032249.15	Anp32a	chr9	protein_coding	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
novel_NIR_20491	chr9	62252275	62279002	+	62252169	62279002	A5SS	ENSMUST00000126451.8	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.45	10	12	10	12	y	0.00	0	2	0	2	n	0.63	12	7	12	7	y	-	-	-	-	-	-	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	ENSMUSG00000032249.15	Anp32a	chr9	protein_coding	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
novel_NIR_20492	chr9	62252275	62279002	+	62274283	62279002	5pMXE	ENSMUST00000129026.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	10	0	10	0	y	-	-	-	-	-	-	1.00	12	0	12	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032249.15	Anp32a	chr9	protein_coding	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
novel_NIR_20493	chr9	62252275	62279002	+	62274625	62279002	5pMXE	ENSMUST00000136603.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	10	0	10	0	y	-	-	-	-	-	-	0.92	12	1	12	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032249.15	Anp32a	chr9	protein_coding	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
novel_NIR_20494	chr9	62252792	62279002	+	62248633	62279002	A5SS	ENSMUST00000138226.8	novel	1.00	11	0	11	0	y	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	16	0	16	0	y	1.00	25	0	25	0	y	-	-	-	-	-	-	1.00	37	0	37	0	y	1.00	2	0	2	0	y	1.00	23	0	23	0	y	0.80	16	4	16	4	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000032249.15	Anp32a	chr9	protein_coding	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
novel_NIR_20495	chr9	62252792	62279002	+	62249292	62279002	A5SS	ENSMUST00000128636.8	novel	0.92	11	1	11	1	y	1.00	7	0	7	0	y	-	-	-	-	-	-	0.84	16	3	16	3	y	0.96	25	1	25	1	y	-	-	-	-	-	-	1.00	37	0	37	0	y	0.50	2	2	2	2	y	1.00	23	0	23	0	y	1.00	16	0	16	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000032249.15	Anp32a	chr9	protein_coding	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
novel_NIR_20496	chr9	62252792	62279002	+	62249533	62279002	A5SS	ENSMUST00000135395.8	novel	0.41	11	16	11	16	y	0.33	7	14	7	14	y	0.00	0	9	0	9	n	0.47	16	18	16	18	y	0.49	25	26	25	26	y	0.00	0	5	0	5	n	0.80	37	9	37	9	y	0.40	2	3	2	3	y	0.66	23	12	23	12	y	0.52	16	15	16	15	y	0.00	0	9	0	9	n	0.00	0	18	0	18	n	ENSMUSG00000032249.15	Anp32a	chr9	protein_coding	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
novel_NIR_20497	chr9	62252792	62279002	+	62249785	62279002	A5SS	ENSMUST00000156461.2	novel	0.55	11	9	11	9	y	0.64	7	4	7	4	y	0.00	0	10	0	10	n	0.67	16	8	16	8	y	0.78	25	7	25	7	y	0.00	0	1	0	1	n	0.80	37	9	37	9	y	0.33	2	4	2	4	y	0.85	23	4	23	4	y	0.64	16	9	16	9	y	0.00	0	6	0	6	n	0.00	0	6	0	6	n	ENSMUSG00000032249.15	Anp32a	chr9	protein_coding	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
novel_NIR_20498	chr9	62252792	62279002	+	62251494	62279002	A5SS	ENSMUST00000141277.8	novel	1.00	11	0	11	0	y	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	16	0	16	0	y	1.00	25	0	25	0	y	-	-	-	-	-	-	1.00	37	0	37	0	y	0.67	2	1	2	1	y	1.00	23	0	23	0	y	0.94	16	1	16	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032249.15	Anp32a	chr9	protein_coding	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
novel_NIR_20499	chr9	62252792	62279002	+	62252169	62279002	A5SS	ENSMUST00000126451.8	novel	0.73	11	4	11	4	y	0.78	7	2	7	2	y	-	-	-	-	-	-	0.80	16	4	16	4	n	0.68	25	12	25	12	y	0.00	0	2	0	2	n	0.84	37	7	37	7	n	1.00	2	0	2	0	y	0.62	23	14	23	14	y	0.59	16	11	16	11	y	0.00	0	12	0	12	n	0.00	0	4	0	4	n	ENSMUSG00000032249.15	Anp32a	chr9	protein_coding	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
novel_NIR_20500	chr9	62252792	62279002	+	62274283	62279002	5pMXE	ENSMUST00000129026.8	novel	1.00	11	0	11	0	y	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	16	0	16	0	y	1.00	25	0	25	0	y	-	-	-	-	-	-	1.00	37	0	37	0	y	1.00	2	0	2	0	y	1.00	23	0	23	0	y	1.00	16	0	16	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032249.15	Anp32a	chr9	protein_coding	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
novel_NIR_20501	chr9	62252792	62279002	+	62274625	62279002	5pMXE	ENSMUST00000136603.8	novel	1.00	11	0	11	0	y	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	16	0	16	0	y	1.00	25	0	25	0	y	-	-	-	-	-	-	0.97	37	1	37	1	y	1.00	2	0	2	0	y	0.96	23	1	23	1	y	0.94	16	1	16	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032249.15	Anp32a	chr9	protein_coding	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
novel_NIR_20502	chr9	63124307	63142571	-	63124307;63124647	63124621;63142571	ES	ENSMUST00000034920.11	novel	0.37	13	22.5	13	27;18	y	0.26	12	34.0	12	33;35	y	0.26	8	23.0	8	26;20	y	0.32	17	36.0	17	40;32	y	0.28	18	47.0	18	52;42	y	0.00	0	7.0	0	9;5	n	0.29	12	29.0	12	32;26	y	0.29	5	12.5	5	14;11	y	0.11	4	32.0	4	36;28	n	0.25	14	41.5	14	41;42	y	0.22	11	38.5	11	41;36	y	0.20	9	37.0	9	42;32	y	ENSMUSG00000058444.9	Map2k5	chr9	protein_coding	mitogen-activated protein kinase kinase 5
novel_NIR_20503	chr9	63250738	63279019	-	63250738;63265342	63265275;63279019	ES	ENSMUST00000034920.11	novel	0.15	5	29.0	5	27;31	y	0.16	6	31.0	6	35;27	y	0.05	2	35.5	2	38;33	n	0.10	5	45.5	5	42;49	n	0.10	6	54.5	6	54;55	n	0.06	1	15.5	1	15;16	n	0.03	1	39.0	1	42;36	n	0.00	0	27.5	0	28;27	n	0.08	2	24.5	2	24;25	n	0.15	10	56.0	10	58;54	y	0.03	1	33.0	1	37;29	n	0.06	3	49.5	3	55;44	n	ENSMUSG00000058444.9	Map2k5	chr9	protein_coding	mitogen-activated protein kinase kinase 5
novel_NIR_20504	chr9	63542669	63543669	+	63542669	63543666	A3SS	ENSMUST00000041551.9	novel	0.34	14	27	14	27	y	0.26	7	20	7	20	y	0.38	9	15	9	15	y	0.24	8	26	8	26	y	0.34	17	33	17	33	y	0.20	4	16	4	16	y	0.19	11	46	11	46	y	0.17	3	15	3	15	y	0.27	13	36	13	36	y	0.29	17	41	17	41	y	0.19	6	26	6	26	y	0.15	9	50	9	50	y	ENSMUSG00000037257.9	Aagab	chr9	protein_coding	alpha- and gamma-adaptin binding protein
novel_NIR_20505	chr9	63861338	63877363	-	63861338	63896754	A5SS	ENSMUST00000144323.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036867.8	Smad6	chr9	protein_coding	SMAD family member 6
novel_NIR_20506	chr9	63992360	63993566	+	63988118	63993566	A5SS	ENSMUST00000176950.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000093759.2	Scarletltr	chr9	lncRNA	Scarletltr, erythroid developmental long intergenic non-protein coding transcript
novel_NIR_20507	chr9	64074670	64075895	-	64072740	64075895	A3SS	ENSMUST00000122091.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000032400.19	Zwilch	chr9	protein_coding	zwilch kinetochore protein
novel_NIR_20508	chr9	64634099	64634218	-	64634099	64644866	A5SS	ENSMUST00000171100.2	novel	0.29	2	5	2	5	y	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	ENSMUSG00000004771.13	Rab11a	chr9	protein_coding	RAB11A, member RAS oncogene family
novel_NIR_20509	chr9	64718868	64734805	+	64718868	64742568	A3SS	ENSMUST00000038890.6	novel	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.22	2	7	2	7	y	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	ENSMUSG00000053641.10	Dennd4a	chr9	protein_coding	DENN/MADD domain containing 4A
novel_NIR_20510	chr9	64795903	64796253	+	64795903	64796202	A3SS	ENSMUST00000038890.6	novel	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	29	0	29	n	0.00	0	17	0	17	n	0.00	0	26	0	26	n	0.00	0	14	0	14	n	0.17	2	10	2	10	y	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.09	2	21	2	21	n	0.00	0	15	0	15	n	0.00	0	16	0	16	n	ENSMUSG00000053641.10	Dennd4a	chr9	protein_coding	DENN/MADD domain containing 4A
novel_NIR_20511	chr9	64804712	64811502	+	64804712	64811432	A3SS	ENSMUST00000038890.6	novel	0.00	0	16	0	16	n	0.00	0	14	0	14	n	0.07	3	38	3	38	n	0.00	0	29	0	29	n	0.18	7	32	7	32	y	0.07	2	25	2	25	n	0.00	0	37	0	37	n	0.08	2	24	2	24	n	0.06	1	16	1	16	n	0.03	1	33	1	33	n	0.00	0	20	0	20	n	0.00	0	30	0	30	n	ENSMUSG00000053641.10	Dennd4a	chr9	protein_coding	DENN/MADD domain containing 4A
novel_NIR_20512	chr9	64824380	64826206	+	64824382	64826206	A5SS	ENSMUST00000217307.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000053641.10	Dennd4a	chr9	protein_coding	DENN/MADD domain containing 4A
novel_NIR_20513	chr9	64932718	64942157	+	64940208	64942157	5pMXE	ENSMUST00000167773.2	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	ENSMUSG00000032393.16	Dpp8	chr9	protein_coding	dipeptidylpeptidase 8
novel_NIR_20514	chr9	64982353	64983018	+	64982410	64983018	A5SS	ENSMUST00000217328.2	novel	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.50	3	3	3	3	y	0.00	0	2	0	2	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	ENSMUSG00000032393.16	Dpp8	chr9	protein_coding	dipeptidylpeptidase 8
novel_NIR_20515	chr9	65009614	65020541	+	65008880	65020541	A5SS	ENSMUST00000213533.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.29	2	5	2	5	y	-	-	-	-	-	-	0.00	0	10	0	10	n	0.29	2	5	2	5	y	0.00	0	7	0	7	n	0.22	2	7	2	7	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000032816.16	Igdcc4	chr9	protein_coding	immunoglobulin superfamily, DCC subclass, member 4
novel_NIR_20516	chr9	65021723	65025726	+	65021723	65025999	A3SS	ENSMUST00000216542.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000032816.16	Igdcc4	chr9	protein_coding	immunoglobulin superfamily, DCC subclass, member 4
novel_NIR_20517	chr9	65021723	65025726	+	65021723	65027500	A3SS	ENSMUST00000213533.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.19	4	17	4	17	y	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000032816.16	Igdcc4	chr9	protein_coding	immunoglobulin superfamily, DCC subclass, member 4
novel_NIR_20518	chr9	65026135	65027500	+	65021723	65027500	A5SS	ENSMUST00000213533.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	17	0	17	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.29	2	5	2	5	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032816.16	Igdcc4	chr9	protein_coding	immunoglobulin superfamily, DCC subclass, member 4
novel_NIR_20519	chr9	65027636	65029933	+	65027636	65029062	A3SS&ES	ENSMUST00000077696.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.22	2	7	2	7	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	16	0	16	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032816.16	Igdcc4	chr9	protein_coding	immunoglobulin superfamily, DCC subclass, member 4
novel_NIR_20520	chr9	65027636	65029933	+	65027636;65029202	65029062;65029933	ES	ENSMUST00000213533.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.20	2	8.0	2	7;9	y	0.00	0	1.5	0	0;3	n	0.00	0	7.0	0	3;11	n	0.00	0	14.0	0	16;12	n	0.00	0	11.5	0	11;12	n	0.00	0	7.0	0	5;9	n	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032816.16	Igdcc4	chr9	protein_coding	immunoglobulin superfamily, DCC subclass, member 4
novel_NIR_20521	chr9	65029202	65029790	+	65029202	65029933	A3SS	ENSMUST00000213533.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.18	2	9	2	9	y	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.08	1	12	1	12	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032816.16	Igdcc4	chr9	protein_coding	immunoglobulin superfamily, DCC subclass, member 4
novel_NIR_20522	chr9	65029202	65029790	+	65029206	65029790	A5SS	ENSMUST00000077696.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032816.16	Igdcc4	chr9	protein_coding	immunoglobulin superfamily, DCC subclass, member 4
novel_NIR_20523	chr9	65041901	65042394	+	65041919	65042394	A5SS	ENSMUST00000213533.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	22	0	22	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	21	0	21	n	0.17	2	10	2	10	y	0.00	0	7	0	7	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032816.16	Igdcc4	chr9	protein_coding	immunoglobulin superfamily, DCC subclass, member 4
novel_NIR_20524	chr9	65143364	65143923	+	65143223	65143923	A5SS	ENSMUST00000216486.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.14	1	6	1	6	n	0.00	0	1	0	1	n	0.25	2	6	2	6	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	ENSMUSG00000032392.12	Parp16	chr9	protein_coding	poly (ADP-ribose) polymerase family, member 16
novel_NIR_20525	chr9	65143493	65143923	+	65141122	65143923	A5SS	ENSMUST00000216702.2	novel	0.02	1	48	1	48	n	0.17	6	29	6	29	y	0.08	3	36	3	36	n	0.02	1	40	1	40	n	0.02	1	50	1	50	n	0.05	1	18	1	18	n	0.00	0	24	0	24	n	0.03	1	31	1	31	n	0.00	0	38	0	38	n	0.07	5	65	5	65	n	0.03	1	33	1	33	n	0.00	0	48	0	48	n	ENSMUSG00000032392.12	Parp16	chr9	protein_coding	poly (ADP-ribose) polymerase family, member 16
novel_NIR_20526	chr9	65143493	65143923	+	65143223	65143923	A5SS	ENSMUST00000216486.2	novel	0.33	1	2	1	2	n	1.00	6	0	6	0	y	0.38	3	5	3	5	y	0.20	1	4	1	4	n	0.25	1	3	1	3	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.14	1	6	1	6	n	0.00	0	1	0	1	n	0.45	5	6	5	6	y	0.20	1	4	1	4	n	0.00	0	5	0	5	n	ENSMUSG00000032392.12	Parp16	chr9	protein_coding	poly (ADP-ribose) polymerase family, member 16
novel_NIR_20527	chr9	65348970	65349785	+	65348970	65351161	A3SS	ENSMUST00000074792.7	novel	0.00	0	24	0	24	n	0.00	0	21	0	21	n	0.00	0	19	0	19	n	0.00	0	22	0	22	n	0.00	0	17	0	17	n	0.00	0	16	0	16	n	0.00	0	28	0	28	n	0.00	0	19	0	19	n	0.00	0	11	0	11	n	0.02	1	40	1	40	n	0.00	0	16	0	16	n	0.15	5	28	5	28	y	ENSMUSG00000059183.13	Mtfmt	chr9	protein_coding	mitochondrial methionyl-tRNA formyltransferase
novel_NIR_20528	chr9	65536983	65537988	+	65537004	65537988	A5SS	ENSMUST00000169003.8	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	6	0	6	n	ENSMUSG00000032387.16	Rbpms2	chr9	protein_coding	RNA binding protein with multiple splicing 2
novel_NIR_20529	chr9	65538520;65538967	65538788;65556631	+	65538520	65556631	cassetteExon	ENSMUST00000216342.2	novel	0.22	4.5	16	0;9	16	n	0.35	7.5	14	0;15	14	n	0.45	5.0	6	0;10	6	n	0.44	8.0	10	0;16	10	n	0.24	6.0	19	0;12	19	n	0.00	0.0	9	0;0	9	n	0.28	8.0	21	1;15	21	n	0.29	2.5	6	0;5	6	n	0.24	4.5	14	2;7	14	y	0.31	8.0	18	1;15	18	n	0.14	2.5	16	0;5	16	n	0.28	7.0	18	0;14	18	n	ENSMUSG00000032387.16	Rbpms2	chr9	protein_coding	RNA binding protein with multiple splicing 2
novel_NIR_20530	chr9	65538520;65538967	65538791;65556631	+	65538520	65556631	cassetteExon	ENSMUST00000216342.2	novel	0.22	4.5	16	0;9	16	n	0.35	7.5	14	0;15	14	n	0.45	5.0	6	0;10	6	n	0.47	9.0	10	2;16	10	y	0.24	6.0	19	0;12	19	n	0.00	0.0	9	0;0	9	n	0.26	7.5	21	0;15	21	n	0.29	2.5	6	0;5	6	n	0.20	3.5	14	0;7	14	n	0.29	7.5	18	0;15	18	n	0.14	2.5	16	0;5	16	n	0.28	7.0	18	0;14	18	n	ENSMUSG00000032387.16	Rbpms2	chr9	protein_coding	RNA binding protein with multiple splicing 2
novel_NIR_20531	chr9	65538967	65556631	+	65538179	65556631	A5SS	ENSMUST00000169003.8	novel	0.14	9	55	9	55	n	0.27	15	40	15	40	y	0.18	10	47	10	47	y	0.22	16	58	16	58	y	0.14	12	71	12	71	n	0.00	0	23	0	23	n	0.19	15	65	15	65	y	0.12	5	35	5	35	n	0.15	7	40	7	40	y	0.15	15	87	15	87	y	0.08	5	57	5	57	n	0.15	14	78	14	78	y	ENSMUSG00000032387.16	Rbpms2	chr9	protein_coding	RNA binding protein with multiple splicing 2
novel_NIR_20532	chr9	65538967	65556631	+	65538520	65556631	A5SS	ENSMUST00000216342.2	novel	0.36	9	16	9	16	y	0.52	15	14	15	14	y	0.62	10	6	10	6	y	0.62	16	10	16	10	n	0.39	12	19	12	19	y	0.00	0	9	0	9	n	0.42	15	21	15	21	n	0.45	5	6	5	6	y	0.33	7	14	7	14	n	0.45	15	18	15	18	n	0.24	5	16	5	16	y	0.44	14	18	14	18	y	ENSMUSG00000032387.16	Rbpms2	chr9	protein_coding	RNA binding protein with multiple splicing 2
novel_NIR_20533	chr9	65538967	65556631	+	65538636	65556631	A5SS	ENSMUST00000213927.2	novel	0.64	9	5	9	5	y	0.79	15	4	15	4	y	1.00	10	0	10	0	y	0.84	16	3	16	3	y	0.60	12	8	12	8	y	0.00	0	1	0	1	n	0.79	15	4	15	4	y	0.62	5	3	5	3	n	0.54	7	6	7	6	y	0.83	15	3	15	3	y	0.50	5	5	5	5	y	0.78	14	4	14	4	y	ENSMUSG00000032387.16	Rbpms2	chr9	protein_coding	RNA binding protein with multiple splicing 2
novel_NIR_20534	chr9	65557287	65557870	+	65557287	65558215	A3SS	ENSMUST00000216342.2	novel	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.67	4	2	4	2	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000032387.16	Rbpms2	chr9	protein_coding	RNA binding protein with multiple splicing 2
novel_NIR_20535	chr9	65557287	65558868	+	65557287	65558215	A3SS&ES	ENSMUST00000216342.2	novel	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000032387.16	Rbpms2	chr9	protein_coding	RNA binding protein with multiple splicing 2
novel_NIR_20536	chr9	65558365	65558540	+	65558365	65558943	A3SS	ENSMUST00000169003.8	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.29	2	5	2	5	y	ENSMUSG00000032387.16	Rbpms2	chr9	protein_coding	RNA binding protein with multiple splicing 2
novel_NIR_20537	chr9	65558365	65558868	+	65558365	65558943	A3SS	ENSMUST00000169003.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.71	5	2	5	2	y	-	-	-	-	-	-	0.44	4	5	4	5	y	ENSMUSG00000032387.16	Rbpms2	chr9	protein_coding	RNA binding protein with multiple splicing 2
novel_NIR_20538	chr9	65558365	65558901	+	65558365	65558943	A3SS	ENSMUST00000169003.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	2	2	2	2	y	1.00	3	0	3	0	y	0.17	1	5	1	5	n	ENSMUSG00000032387.16	Rbpms2	chr9	protein_coding	RNA binding protein with multiple splicing 2
novel_NIR_20539	chr9	65595255	65596377	+	65595255	65595629	3pMXE	ENSMUST00000136166.3	novel	1.00	8	0	8	0	y	0.60	3	2	3	2	y	1.00	8	0	8	0	y	1.00	2	0	2	0	y	1.00	7	0	7	0	y	0.71	5	2	5	2	y	0.75	3	1	3	1	y	1.00	2	0	2	0	y	0.64	7	4	7	4	y	1.00	9	0	9	0	y	0.57	4	3	4	3	y	-	-	-	-	-	-	ENSMUSG00000040652.17	Oaz2	chr9	protein_coding	ornithine decarboxylase antizyme 2
novel_NIR_20540	chr9	65608470	65611365	-	65608470	65609554	A5SS	ENSMUST00000159109.2	novel	0.20	2	8	2	8	y	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.00	0	4	0	4	n	0.00	0	13	0	13	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	ENSMUSG00000040524.10	Zfp609	chr9	protein_coding	zinc finger protein 609
novel_NIR_20541	chr9	65739435	65758649	-	65740730	65758649	A3SS	ENSMUST00000179395.8	novel	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.15	2	11	2	11	y	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.00	0	21	0	21	n	0.00	0	7	0	7	n	0.00	0	20	0	20	n	0.08	1	12	1	12	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	ENSMUSG00000032386.16	Trip4	chr9	protein_coding	thyroid hormone receptor interactor 4
novel_NIR_20542	chr9	65816450	65844079	+	65816450	65828286	A3SS&ES	ENSMUST00000146069.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032384.17	Csnk1g1	chr9	protein_coding	casein kinase 1, gamma 1
novel_NIR_20543	chr9	65816450	65844079	+	65816450	65857298	A3SS	ENSMUST00000034949.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032384.17	Csnk1g1	chr9	protein_coding	casein kinase 1, gamma 1
novel_NIR_20544	chr9	65816450	65844079	+	65816450	65865611	A3SS	ENSMUST00000205379.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032384.17	Csnk1g1	chr9	protein_coding	casein kinase 1, gamma 1
novel_NIR_20545	chr9	66016910	66023733	-	66016910	66033725	A5SS	ENSMUST00000137542.2	novel	1.00	1	0	1	0	n	0.67	2	1	2	1	y	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	ENSMUSG00000032382.15	Snx1	chr9	protein_coding	sorting nexin 1
novel_NIR_20546	chr9	66016910;66023807	66023733;66031889	-	66016910	66031889	cassetteExon	ENSMUST00000034946.15	novel	0.02	0.5	22	1;0	22	n	0.09	1.5	15	2;1	15	n	0.05	2.0	35	3;1	35	n	0.00	0.0	21	0;0	21	n	0.03	0.5	19	0;1	19	n	0.00	0.0	10	0;0	10	n	0.08	2.0	22	2;2	22	n	0.16	3.0	16	4;2	16	y	0.00	0.0	16	0;0	16	n	0.00	0.0	21	0;0	21	n	0.11	2.5	21	1;4	21	n	0.02	0.5	21	1;0	21	n	ENSMUSG00000032382.15	Snx1	chr9	protein_coding	sorting nexin 1
novel_NIR_20547	chr9	66128037	66153699	+	66128037;66139133	66138995;66153699	ES	ENSMUST00000034944.9	novel	0.00	0	14.0	0	17;11	n	0.00	0	13.5	0	12;15	n	0.15	2	11.0	2	8;14	y	0.00	0	12.0	0	14;10	n	0.00	0	34.5	0	36;33	n	0.00	0	7.5	0	7;8	n	0.00	0	17.5	0	12;23	n	0.00	0	10.0	0	9;11	n	0.00	0	18.0	0	19;17	n	0.00	0	19.5	0	23;16	n	0.04	1	27.0	1	20;34	n	0.00	0	26.5	0	28;25	n	ENSMUSG00000032380.10	Dapk2	chr9	protein_coding	death-associated protein kinase 2
novel_NIR_20548	chr9	66321530	66323466	+	66321681	66323466	A5SS&ES	ENSMUST00000042824.13	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	0.12	2	14	2	14	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.18	2	9	2	9	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000038664.17	Herc1	chr9	protein_coding	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1
novel_NIR_20549	chr9	66347188	66349188	+	66347188	66349185	A3SS	ENSMUST00000042824.13	novel	0.00	0	2	0	2	n	0.14	1	6	1	6	n	0.25	3	9	3	9	y	0.57	4	3	4	3	y	0.12	1	7	1	7	n	0.27	3	8	3	8	y	0.11	1	8	1	8	n	0.33	1	2	1	2	n	1.00	1	0	1	0	n	0.50	3	3	3	3	y	0.33	1	2	1	2	n	0.20	2	8	2	8	y	ENSMUSG00000038664.17	Herc1	chr9	protein_coding	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1
novel_NIR_20550	chr9	66355814	66358009	+	66355814	66357985	A3SS	ENSMUST00000042824.13	novel	0.40	2	3	2	3	y	-	-	-	-	-	-	0.59	10	7	10	7	y	0.00	0	7	0	7	n	0.82	9	2	9	2	y	1.00	3	0	3	0	y	0.33	3	6	3	6	y	0.57	4	3	4	3	y	0.82	9	2	9	2	y	0.60	3	2	3	2	y	0.33	1	2	1	2	n	0.00	0	4	0	4	n	ENSMUSG00000038664.17	Herc1	chr9	protein_coding	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1
novel_NIR_20551	chr9	66364835	66365649	+	66364835	66365476	A3SS	ENSMUST00000042824.13	novel	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	17	0	17	n	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	20	0	20	n	0.00	0	8	0	8	n	0.20	2	8	2	8	y	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.00	0	16	0	16	n	ENSMUSG00000038664.17	Herc1	chr9	protein_coding	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1
novel_NIR_20552	chr9	66374935	66375064	+	66374935	66375042	A3SS	ENSMUST00000042824.13	novel	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	17	0	17	n	0.00	0	15	0	15	n	0.11	2	17	2	17	n	0.09	1	10	1	10	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.18	3	14	3	14	y	0.09	1	10	1	10	n	0.14	3	19	3	19	n	ENSMUSG00000038664.17	Herc1	chr9	protein_coding	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1
novel_NIR_20553	chr9	66375255	66376209	+	66375255	66376260	A3SS	ENSMUST00000042824.13	novel	0.45	5	6	5	6	y	0.43	3	4	3	4	y	0.07	1	13	1	13	n	0.00	0	7	0	7	n	0.20	2	8	2	8	y	0.25	1	3	1	3	n	0.64	7	4	7	4	y	0.00	0	15	0	15	n	0.14	1	6	1	6	n	0.20	2	8	2	8	y	0.43	3	4	3	4	y	0.22	4	14	4	14	y	ENSMUSG00000038664.17	Herc1	chr9	protein_coding	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1
novel_NIR_20554	chr9	66474185	66486794	-	66474185	66483279	5pMXE	ENSMUST00000139952.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032376.13	Usp3	chr9	protein_coding	ubiquitin specific peptidase 3
novel_NIR_20555	chr9	66706348	66709660	-	66706348	66709656	A5SS	ENSMUST00000169420.2	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	ENSMUSG00000092131.2	BC050972	chr9	lncRNA	cDNA sequence BC050972
novel_NIR_20556	chr9	66706348	66709660	-	66706348	66710005	A5SS	ENSMUST00000168475.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	ENSMUSG00000092131.2	BC050972	chr9	lncRNA	cDNA sequence BC050972
novel_NIR_20557	chr9	66706348	66709660	-	66706348	66710516	A5SS	ENSMUST00000169153.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000092131.2	BC050972	chr9	lncRNA	cDNA sequence BC050972
novel_NIR_20558	chr9	66853960	66854113	+	66853794	66854113	A5SS	ENSMUST00000143044.2	novel	1.00	5	0	5	0	y	0.50	1	1	1	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.62	5	3	5	3	y	1.00	1	0	1	0	n	0.25	1	3	1	3	n	1.00	7	0	7	0	y	0.67	2	1	2	1	y	1.00	9	0	9	0	y	0.67	4	2	4	2	y	-	-	-	-	-	-	ENSMUSG00000036781.14	Rps27l	chr9	protein_coding	ribosomal protein S27-like
novel_NIR_20559	chr9	66854979	66855981	+	66854979	66855923	A3SS	ENSMUST00000147394.8	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036781.14	Rps27l	chr9	protein_coding	ribosomal protein S27-like
novel_NIR_20560	chr9	66854979	66855981	+	66854979	66855925	A3SS	ENSMUST00000146573.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036781.14	Rps27l	chr9	protein_coding	ribosomal protein S27-like
novel_NIR_20561	chr9	66854979	66856624	+	66854979	66855921	A3SS&ES	ENSMUST00000127896.8	novel	0.00	0	36	0	36	n	0.00	0	30	0	30	n	0.00	0	35	0	35	n	0.00	0	33	0	33	n	0.00	0	36	0	36	n	0.00	0	14	0	14	n	0.00	0	27	0	27	n	0.24	4	13	4	13	y	0.00	0	28	0	28	n	0.00	0	32	0	32	n	0.00	0	33	0	33	n	0.00	0	31	0	31	n	ENSMUSG00000036781.14	Rps27l	chr9	protein_coding	ribosomal protein S27-like
novel_NIR_20562	chr9	66854979	66856624	+	66854979	66855923	A3SS&ES	ENSMUST00000147394.8	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036781.14	Rps27l	chr9	protein_coding	ribosomal protein S27-like
novel_NIR_20563	chr9	66854979	66856624	+	66854979	66855925	A3SS&ES	ENSMUST00000146573.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000036781.14	Rps27l	chr9	protein_coding	ribosomal protein S27-like
novel_NIR_20564	chr9	66875122	66877864	-	66863482	66877864	A3SS	ENSMUST00000215172.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	ENSMUSG00000032370.9	Lactb	chr9	protein_coding	lactamase, beta
novel_NIR_20565	chr9	67367271	67401726	-	67367271	67446614	A5SS	ENSMUST00000215784.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000052698.16	Tln2	chr9	protein_coding	talin 2
novel_NIR_20566	chr9	67367271	67401726	-	67367271	67466896	A5SS	ENSMUST00000040025.14	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000052698.16	Tln2	chr9	protein_coding	talin 2
novel_NIR_20567	chr9	67831712	67833052	+	67831124	67833052	A5SS	ENSMUST00000077879.7	novel	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.04	1	22	1	22	n	0.00	0	8	0	8	n	0.00	0	15	0	15	n	0.00	0	13	0	13	n	0.11	1	8	1	8	n	0.19	3	13	3	13	y	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	21	0	21	n	ENSMUSG00000035284.11	Vps13c	chr9	protein_coding	vacuolar protein sorting 13C
novel_NIR_20568	chr9	69198141	69255414	+	69103386	69255414	A5SS	ENSMUST00000034766.14	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000032238.18	Rora	chr9	protein_coding	RAR-related orphan receptor alpha
novel_NIR_20569	chr9	69198141	69255414	+	69104871	69255414	A5SS	ENSMUST00000174296.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000032238.18	Rora	chr9	protein_coding	RAR-related orphan receptor alpha
novel_NIR_20570	chr9	69255499	69269032	+	69255499	69269021	A3SS	ENSMUST00000034766.14	novel	0.00	0	14	0	14	n	0.00	0	2	0	2	n	0.05	2	37	2	37	n	0.00	0	28	0	28	n	0.12	6	42	6	42	n	0.08	2	24	2	24	n	0.16	5	27	5	27	y	0.05	1	19	1	19	n	0.00	0	17	0	17	n	0.00	0	28	0	28	n	0.00	0	10	0	10	n	0.08	2	22	2	22	n	ENSMUSG00000032238.18	Rora	chr9	protein_coding	RAR-related orphan receptor alpha
novel_NIR_20571	chr9	69307000	69307759	+	69305335	69307759	A5SS	ENSMUST00000125938.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000032235.16	Ice2	chr9	protein_coding	interactor of little elongation complex ELL subunit 2
novel_NIR_20572	chr9	69307000	69307759	+	69306369	69307759	A5SS	ENSMUST00000034761.15	novel	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.29	2	5	2	5	y	ENSMUSG00000032235.16	Ice2	chr9	protein_coding	interactor of little elongation complex ELL subunit 2
novel_NIR_20573	chr9	69324391	69332939	+	69324391;69329072	69328943;69332939	ES	ENSMUST00000034761.15	novel	0.17	2	9.5	2	9;10	y	0.00	0	7.5	0	8;7	n	0.15	3	17.5	3	21;14	y	0.00	0	14.0	0	15;13	n	0.18	4	18.5	4	19;18	y	0.17	2	10.0	2	12;8	y	0.16	2	10.5	2	12;9	y	0.00	0	8.0	0	12;4	n	0.00	0	15.0	0	18;12	n	0.00	0	18.5	0	26;11	n	0.00	0	9.0	0	8;10	n	0.00	0	12.5	0	15;10	n	ENSMUSG00000032235.16	Ice2	chr9	protein_coding	interactor of little elongation complex ELL subunit 2
novel_NIR_20574	chr9	69334183	69335515	+	69334183	69335598	A3SS	ENSMUST00000034761.15	novel	0.00	0	30	0	30	n	0.00	0	12	0	12	n	0.00	0	19	0	19	n	0.00	0	20	0	20	n	0.17	3	15	3	15	y	0.00	0	4	0	4	n	0.00	0	22	0	22	n	0.00	0	11	0	11	n	0.06	1	17	1	17	n	0.00	0	18	0	18	n	0.00	0	16	0	16	n	0.05	1	21	1	21	n	ENSMUSG00000032235.16	Ice2	chr9	protein_coding	interactor of little elongation complex ELL subunit 2
novel_NIR_20575	chr9	69334183	69335636	+	69334183	69335598	A3SS	ENSMUST00000034761.15	novel	0.00	0	30	0	30	n	0.00	0	12	0	12	n	0.00	0	19	0	19	n	0.00	0	20	0	20	n	0.25	5	15	5	15	y	0.00	0	4	0	4	n	0.00	0	22	0	22	n	0.00	0	11	0	11	n	0.00	0	17	0	17	n	0.00	0	18	0	18	n	0.00	0	16	0	16	n	0.00	0	21	0	21	n	ENSMUSG00000032235.16	Ice2	chr9	protein_coding	interactor of little elongation complex ELL subunit 2
novel_NIR_20576	chr9	69904539	69904703	+	69904539	69905530	A3SS	ENSMUST00000154772.8	novel	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.10	2	19	2	19	n	0.08	1	12	1	12	n	0.00	0	24	0	24	n	0.00	0	13	0	13	n	0.11	2	16	2	16	n	0.00	0	7	0	7	n	0.17	3	15	3	15	y	0.00	0	15	0	15	n	0.15	2	11	2	11	y	0.05	1	18	1	18	n	ENSMUSG00000011958.18	Bnip2	chr9	protein_coding	BCL2/adenovirus E1B interacting protein 2
novel_NIR_20577	chr9	69905369	69906376	+	69905615	69906376	A5SS&ES	ENSMUST00000154772.8	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.22	2	7	2	7	y	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	7	0	7	n	ENSMUSG00000011958.18	Bnip2	chr9	protein_coding	BCL2/adenovirus E1B interacting protein 2
novel_NIR_20578	chr9	69910949	69914325	+	69910949	69911588	A3SS&ES	ENSMUST00000034754.12	novel	0.08	2	22	2	22	n	0.19	4	17	4	17	y	0.12	5	38	5	38	n	0.00	0	21	0	21	n	0.05	3	52	3	52	n	0.15	3	17	3	17	y	0.10	5	45	5	45	n	0.00	0	35	0	35	n	0.10	2	18	2	18	n	0.05	2	39	2	39	n	0.00	0	22	0	22	n	0.00	0	35	0	35	n	ENSMUSG00000011958.18	Bnip2	chr9	protein_coding	BCL2/adenovirus E1B interacting protein 2
novel_NIR_20579	chr9	69914386	69922574	+	69920234	69922574	5pMXE	ENSMUST00000119413.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	9	0	9	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
novel_NIR_20580	chr9	69914393	69922574	+	69920234	69922574	5pMXE	ENSMUST00000119413.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.20	3	12	3	12	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.25	3	9	3	9	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
novel_NIR_20581	chr9	69917154	69922574	+	69920234	69922574	5pMXE	ENSMUST00000119413.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	12	0	12	n	0.25	1	3	1	3	n	0.50	1	1	1	1	n	0.50	2	2	2	2	y	0.33	1	2	1	2	n	0.10	1	9	1	9	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
novel_NIR_20582	chr9	69920234	69922205	+	69919943	69922205	A5SS	ENSMUST00000140305.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.22	2	7	2	7	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
novel_NIR_20583	chr9	69920234	69922205	+	69920234	69922574	A3SS	ENSMUST00000119413.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.14	2	12	2	12	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.18	2	9	2	9	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
novel_NIR_20584	chr9	69920234;69922300	69922205;69922574	+	69920234	69922574	cassetteExon	ENSMUST00000119413.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.17	2.5	12	2;3	12	y	0.00	0.0	3	0;0	3	n	0.00	0.0	1	0;0	1	n	0.00	0.0	2	0;0	2	n	0.50	2.0	2	0;4	2	n	0.10	1.0	9	2;0	9	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0.0	1	0;0	1	n	-	-	-	-	-	-	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
novel_NIR_20585	chr9	69920512	69922574	+	69920234	69922574	A5SS	ENSMUST00000119413.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.08	1	12	1	12	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.18	2	9	2	9	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
novel_NIR_20586	chr9	69920512	69922574	+	69921773	69922574	A5SS&ES	ENSMUST00000122087.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.14	1	6	1	6	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
novel_NIR_20587	chr9	69922300	69922574	+	69920234	69922574	A5SS	ENSMUST00000119413.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.20	3	12	3	12	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.67	4	2	4	2	y	0.00	0	9	0	9	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
novel_NIR_20588	chr9	69922300	69922574	+	69921773	69922574	A5SS	ENSMUST00000122087.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	3	6	3	6	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
novel_NIR_20589	chr9	69922300	69922574	+	69922297	69922574	A5SS	ENSMUST00000140305.8	novel	-	-	-	-	-	-	0.00	0	8	0	8	n	0.08	3	36	3	36	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.31	4	9	4	9	y	0.00	0	18	0	18	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
novel_NIR_20590	chr9	69922692	69924070	+	69922692	69923050	A3SS&ES	ENSMUST00000131078.8	novel	0.00	0	18	0	18	n	0.00	0	21	0	21	n	0.00	0	21	0	21	n	0.00	0	26	0	26	n	0.00	0	28	0	28	n	0.00	0	6	0	6	n	0.00	0	28	0	28	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.20	3	12	3	12	y	0.00	0	16	0	16	n	0.00	0	16	0	16	n	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
novel_NIR_20591	chr9	69922692	69924110	+	69922692	69923050	A3SS&ES	ENSMUST00000131078.8	novel	0.00	0	18	0	18	n	0.19	5	21	5	21	y	0.22	6	21	6	21	y	0.00	0	26	0	26	n	0.00	0	28	0	28	n	0.00	0	6	0	6	n	0.00	0	28	0	28	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.00	0	16	0	16	n	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
novel_NIR_20592	chr9	69924205	69924426	+	69924205	69924355	A3SS	ENSMUST00000140265.8	novel	0.19	3	13	3	13	y	0.20	6	24	6	24	y	0.33	9	18	9	18	y	0.00	0	24	0	24	n	0.46	6	7	6	7	y	0.33	3	6	3	6	y	0.41	7	10	7	10	y	0.67	4	2	4	2	y	0.33	3	6	3	6	y	0.32	7	15	7	15	y	0.00	0	12	0	12	n	0.14	2	12	2	12	n	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
novel_NIR_20593	chr9	69924205	69924426	+	69924205	69925962	A3SS	ENSMUST00000116552.8	novel	0.15	3	17	3	17	y	0.32	6	13	6	13	y	0.50	9	9	9	9	y	0.00	0	11	0	11	n	0.43	6	8	6	8	y	0.27	3	8	3	8	y	0.33	7	14	7	14	y	0.31	4	9	4	9	y	0.30	3	7	3	7	y	0.39	7	11	7	11	y	0.00	0	9	0	9	n	0.29	2	5	2	5	y	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
novel_NIR_20594	chr9	69924205	69924426	+	69924205	69929719	A3SS	ENSMUST00000119905.8	novel	0.30	3	7	3	7	y	0.67	6	3	6	3	y	0.41	9	13	9	13	y	0.00	0	4	0	4	n	0.67	6	3	6	3	y	0.38	3	5	3	5	y	0.54	7	6	7	6	y	0.36	4	7	4	7	y	1.00	3	0	3	0	y	0.88	7	1	7	1	y	0.00	0	3	0	3	n	0.40	2	3	2	3	y	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
novel_NIR_20595	chr9	69924205	69926691	+	69924205	69924355	A3SS&ES	ENSMUST00000140265.8	novel	0.00	0	13	0	13	n	0.00	0	24	0	24	n	0.00	0	18	0	18	n	0.00	0	24	0	24	n	0.50	7	7	7	7	y	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
novel_NIR_20596	chr9	69924205	69926691	+	69924205	69925962	A3SS&ES	ENSMUST00000116552.8	novel	0.00	0	17	0	17	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.47	7	8	7	8	y	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
novel_NIR_20597	chr9	69924205	69926691	+	69924205	69929719	A3SS	ENSMUST00000119905.8	novel	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.70	7	3	7	3	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
novel_NIR_20598	chr9	69924205	69926739	+	69924205	69924355	A3SS&ES	ENSMUST00000140265.8	novel	0.07	1	13	1	13	n	0.04	1	24	1	24	n	0.33	9	18	9	18	y	0.00	0	24	0	24	n	0.00	0	7	0	7	n	0.25	2	6	2	6	y	0.00	0	10	0	10	n	0.60	3	2	3	2	y	0.00	0	6	0	6	n	0.06	1	15	1	15	n	0.14	2	12	2	12	n	0.08	1	12	1	12	n	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
novel_NIR_20599	chr9	69924205	69926739	+	69924205	69925962	A3SS&ES	ENSMUST00000116552.8	novel	0.06	1	17	1	17	n	0.07	1	13	1	13	n	0.50	9	9	9	9	y	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.20	2	8	2	8	y	0.00	0	14	0	14	n	0.25	3	9	3	9	y	0.00	0	7	0	7	n	0.08	1	11	1	11	n	0.18	2	9	2	9	y	0.17	1	5	1	5	n	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
novel_NIR_20600	chr9	69924205	69926739	+	69924205	69929719	A3SS	ENSMUST00000119905.8	novel	0.12	1	7	1	7	n	0.25	1	3	1	3	n	0.41	9	13	9	13	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.29	2	5	2	5	y	0.00	0	6	0	6	n	0.30	3	7	3	7	y	-	-	-	-	-	-	0.50	1	1	1	1	n	0.40	2	3	2	3	y	0.25	1	3	1	3	n	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
novel_NIR_20601	chr9	70376713	70383058	-	70376763	70383058	A3SS	ENSMUST00000215848.2	novel	0.00	0	15	0	15	n	0.00	0	14	0	14	n	0.00	0	24	0	24	n	0.00	0	18	0	18	n	0.04	1	23	1	23	n	0.00	0	12	0	12	n	0.17	4	19	4	19	y	0.07	1	13	1	13	n	0.00	0	12	0	12	n	0.00	0	18	0	18	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	ENSMUSG00000032217.14	Rnf111	chr9	protein_coding	ring finger 111
novel_NIR_20602	chr9	70479458	70480796	+	70479458	70480793	A3SS	ENSMUST00000216816.2	novel	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.09	1	10	1	10	n	0.00	0	15	0	15	n	0.00	0	4	0	4	n	0.11	1	8	1	8	n	0.23	3	10	3	10	y	0.00	0	7	0	7	n	0.00	0	11	0	11	n	ENSMUSG00000032212.11	Sltm	chr9	protein_coding	SAFB-like, transcription modulator
novel_NIR_20603	chr9	70479458	70480967	+	70479458	70480793	A3SS	ENSMUST00000216816.2	novel	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.08	1	11	1	11	n	0.00	0	14	0	14	n	0.30	3	7	3	7	y	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.20	1	4	1	4	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	ENSMUSG00000032212.11	Sltm	chr9	protein_coding	SAFB-like, transcription modulator
novel_NIR_20604	chr9	70492105	70514740	-	70512568	70514740	3pMXE	ENSMUST00000213380.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000042444.11	Mindy2	chr9	protein_coding	MINDY lysine 48 deubiquitinase 2
novel_NIR_20605	chr9	70518284	70534037	-	70518284;70524188	70524046;70534037	ES	ENSMUST00000049031.6	novel	0.44	2	2.5	2	4;1	y	0.00	0	2.5	0	1;4	n	0.00	0	16.5	0	17;16	n	0.00	0	8.0	0	7;9	n	0.09	1	10.0	1	7;13	n	0.00	0	2.5	0	2;3	n	0.00	0	8.0	0	6;10	n	0.14	1	6.0	1	6;6	n	0.00	0	8.5	0	10;7	n	0.05	1	18.5	1	15;22	n	0.21	2	7.5	2	9;6	y	0.00	0	14.5	0	10;19	n	ENSMUSG00000042444.11	Mindy2	chr9	protein_coding	MINDY lysine 48 deubiquitinase 2
novel_NIR_20606	chr9	70524188	70534033	-	70524188	70534037	A5SS	ENSMUST00000049031.6	novel	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	16	0	16	n	0.00	0	9	0	9	n	0.13	2	13	2	13	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.04	1	22	1	22	n	0.25	2	6	2	6	y	0.00	0	19	0	19	n	ENSMUSG00000042444.11	Mindy2	chr9	protein_coding	MINDY lysine 48 deubiquitinase 2
novel_NIR_20607	chr9	70727824	70728133	-	70727824	70730655	A5SS	ENSMUST00000034731.10	novel	0.21	34	126	34	126	y	0.23	37	122	37	122	y	0.23	12	40	12	40	y	0.19	39	167	39	167	y	0.15	19	108	19	108	y	0.20	3	12	3	12	y	0.16	23	119	23	119	y	0.18	4	18	4	18	y	0.22	48	175	48	175	y	0.24	85	263	85	263	y	0.22	64	222	64	222	y	0.20	49	192	49	192	y	ENSMUSG00000032207.11	Lipc	chr9	protein_coding	lipase, hepatic
novel_NIR_20608	chr9	70730845	70742217	-	70730845	70859326	A5SS	ENSMUST00000216798.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000032207.11	Lipc	chr9	protein_coding	lipase, hepatic
novel_NIR_20609	chr9	70730845	70746248	-	70730845	70859326	A5SS	ENSMUST00000216798.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032207.11	Lipc	chr9	protein_coding	lipase, hepatic
novel_NIR_20610	chr9	70841890	70841990	-	70841890	70859326	A5SS	ENSMUST00000215814.2	novel	1.00	3	0	3	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000032207.11	Lipc	chr9	protein_coding	lipase, hepatic
novel_NIR_20611	chr9	71033470	71033963	-	71030290	71033963	A3SS	ENSMUST00000144618.8	novel	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.57	4	3	4	3	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.60	3	2	3	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	6	0	6	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	ENSMUSG00000032204.14	Aqp9	chr9	protein_coding	aquaporin 9
novel_NIR_20612	chr9	71045496	71067605	-	71045496	71069599	A5SS	ENSMUST00000060917.12	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	3	0	3	0	y	0.00	0	1	0	1	n	ENSMUSG00000032204.14	Aqp9	chr9	protein_coding	aquaporin 9
novel_NIR_20613	chr9	71045496	71069556	-	71045496	71069599	A5SS	ENSMUST00000060917.12	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	ENSMUSG00000032204.14	Aqp9	chr9	protein_coding	aquaporin 9
novel_NIR_20614	chr9	71070428	71070524	-	71070428	71070694	A5SS	ENSMUST00000113570.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	8	0	8	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000032204.14	Aqp9	chr9	protein_coding	aquaporin 9
novel_NIR_20615	chr9	71070428	71070524	-	71070428	71071823	A5SS	ENSMUST00000139495.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.83	5	1	5	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	8	0	8	0	y	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000032204.14	Aqp9	chr9	protein_coding	aquaporin 9
novel_NIR_20616	chr9	71070428	71070834	-	71070428	71070694	A5SS	ENSMUST00000113570.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.50	3	3	3	3	y	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000032204.14	Aqp9	chr9	protein_coding	aquaporin 9
novel_NIR_20617	chr9	71070428	71070834	-	71070428	71071823	A5SS	ENSMUST00000139495.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000032204.14	Aqp9	chr9	protein_coding	aquaporin 9
novel_NIR_20618	chr9	71070428	71072246	-	71070423	71072246	A3SS	ENSMUST00000135892.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032204.14	Aqp9	chr9	protein_coding	aquaporin 9
novel_NIR_20619	chr9	71070428	71072246	-	71070428	71070694	A5SS&ES	ENSMUST00000113570.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.29	2	5	2	5	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000032204.14	Aqp9	chr9	protein_coding	aquaporin 9
novel_NIR_20620	chr9	71070428	71072246	-	71070428	71071823	A5SS&ES	ENSMUST00000139495.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000032204.14	Aqp9	chr9	protein_coding	aquaporin 9
novel_NIR_20621	chr9	71071935	71072246	-	71070423	71072246	A3SS	ENSMUST00000135892.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032204.14	Aqp9	chr9	protein_coding	aquaporin 9
novel_NIR_20622	chr9	71071935	71072246	-	71071935	71074766	A5SS	ENSMUST00000133239.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032204.14	Aqp9	chr9	protein_coding	aquaporin 9
novel_NIR_20623	chr9	71071935	71072246	-	71071935	71074788	A5SS	ENSMUST00000139495.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000032204.14	Aqp9	chr9	protein_coding	aquaporin 9
novel_NIR_20624	chr9	71083925	71086187	+	71083925	71114665	A3SS	ENSMUST00000214960.2	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.33	2	4	2	4	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	ENSMUSG00000111429.2	Gm32511	chr9	lncRNA	predicted gene, 32511
novel_NIR_20625	chr9	71083925	71086187	+	71083925;71085596	71085463;71086187	ES	ENSMUST00000217021.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	0.5	0	0;1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000111429.2	Gm32511	chr9	lncRNA	predicted gene, 32511
novel_NIR_20626	chr9	71391087	71391568	-	71391087	71392017	A5SS	ENSMUST00000163972.2	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	20	0	20	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	ENSMUSG00000032199.14	Polr2m	chr9	protein_coding	polymerase (RNA) II (DNA directed) polypeptide M
novel_NIR_20627	chr9	71763816	71765766	-	71763819	71765766	A3SS	ENSMUST00000183404.8	novel	0.00	0	29	0	29	n	0.00	0	21	0	21	n	0.10	7	62	7	62	n	0.09	3	32	3	32	n	0.07	3	37	3	37	n	0.06	2	32	2	32	n	0.11	4	32	4	32	n	0.05	2	36	2	36	n	0.17	3	15	3	15	y	0.05	2	42	2	42	n	0.03	1	30	1	30	n	0.05	2	36	2	36	n	ENSMUSG00000032228.17	Tcf12	chr9	protein_coding	transcription factor 12
novel_NIR_20628	chr9	71775557	71776281	-	71775560	71776281	A3SS	ENSMUST00000183404.8	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.08	1	12	1	12	n	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.00	0	4	0	4	n	1.00	3	0	3	0	y	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	ENSMUSG00000032228.17	Tcf12	chr9	protein_coding	transcription factor 12
novel_NIR_20629	chr9	71775557	71777356	-	71775560	71777356	A3SS	ENSMUST00000034755.13	novel	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.00	0	26	0	26	n	0.00	0	7	0	7	n	0.06	1	15	1	15	n	0.00	0	18	0	18	n	0.00	0	10	0	10	n	0.23	3	10	3	10	y	0.00	0	6	0	6	n	0.00	0	19	0	19	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	ENSMUSG00000032228.17	Tcf12	chr9	protein_coding	transcription factor 12
novel_NIR_20630	chr9	71775557	71777356	-	71776352	71777356	A3SS&ES	ENSMUST00000183404.8	novel	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.06	1	15	1	15	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.25	3	9	3	9	y	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	ENSMUSG00000032228.17	Tcf12	chr9	protein_coding	transcription factor 12
novel_NIR_20631	chr9	72016181	72016958	-	71792570	72016958	A3SS	ENSMUST00000184867.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032228.17	Tcf12	chr9	protein_coding	transcription factor 12
novel_NIR_20632	chr9	72016181	72016958	-	71851300	72016958	A3SS	ENSMUST00000184072.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032228.17	Tcf12	chr9	protein_coding	transcription factor 12
novel_NIR_20633	chr9	72016181	72016958	-	71907800	72016958	A3SS	ENSMUST00000183594.2	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.67	4	2	4	2	y	0.00	0	2	0	2	n	0.25	1	3	1	3	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032228.17	Tcf12	chr9	protein_coding	transcription factor 12
novel_NIR_20634	chr9	72016181	72016958	-	71914044	72016958	A3SS	ENSMUST00000184523.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032228.17	Tcf12	chr9	protein_coding	transcription factor 12
novel_NIR_20635	chr9	7206081	7206720	+	7203555	7206720	A5SS	ENSMUST00000034499.10	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	1.00	3	0	3	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.12	1	7	1	7	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000032002.11	Dcun1d5	chr9	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)
novel_NIR_20636	chr9	7206183	7206720	+	7203555	7206720	A5SS	ENSMUST00000034499.10	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.43	3	4	3	4	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000032002.11	Dcun1d5	chr9	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)
novel_NIR_20637	chr9	7206222	7206720	+	7203555	7206720	A5SS	ENSMUST00000034499.10	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.64	7	4	7	4	y	1.00	4	0	4	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.67	4	2	4	2	y	0.36	4	7	4	7	y	0.60	3	2	3	2	y	0.00	0	1	0	1	n	ENSMUSG00000032002.11	Dcun1d5	chr9	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)
novel_NIR_20638	chr9	7206334	7206720	+	7203555	7206720	A5SS	ENSMUST00000034499.10	novel	1.00	4	0	4	0	y	0.50	1	1	1	1	n	0.50	4	4	4	4	y	-	-	-	-	-	-	0.60	3	2	3	2	y	1.00	1	0	1	0	n	0.62	5	3	5	3	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.50	7	7	7	7	y	0.60	3	2	3	2	y	0.75	3	1	3	1	y	ENSMUSG00000032002.11	Dcun1d5	chr9	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)
novel_NIR_20639	chr9	72193342	72202561	+	72182311	72202561	A5SS	ENSMUST00000184036.8	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.44	4	5	4	5	y	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	ENSMUSG00000038535.18	Zfp280d	chr9	protein_coding	zinc finger protein 280D
novel_NIR_20640	chr9	72203317	72205964	+	72203317	72205984	A3SS	ENSMUST00000184517.8	novel	0.20	1	4	1	4	n	0.12	1	7	1	7	n	0.18	2	9	2	9	y	0.00	0	7	0	7	n	0.22	2	7	2	7	y	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	ENSMUSG00000038535.18	Zfp280d	chr9	protein_coding	zinc finger protein 280D
novel_NIR_20641	chr9	72246146	72258807	+	72246146	72246294	A3SS&ES	ENSMUST00000184399.8	novel	0.10	1	9	1	9	n	0.15	2	11	2	11	y	0.12	2	15	2	15	n	0.00	0	5	0	5	n	0.06	1	16	1	16	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	8	0	8	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	14	0	14	n	ENSMUSG00000038535.18	Zfp280d	chr9	protein_coding	zinc finger protein 280D
novel_NIR_20642	chr9	72246146	72258807	+	72246146;72246330	72246294;72258807	ES	ENSMUST00000184036.8	novel	0.11	1	8.5	1	9;8	n	0.18	2	9.0	2	11;7	y	0.13	2	13.0	2	15;11	n	0.00	0	5.5	0	5;6	n	0.08	1	12.0	1	16;8	n	0.00	0	3.0	0	5;1	n	0.00	0	9.5	0	11;8	n	0.00	0	7.0	0	8;6	n	0.00	0	12.0	0	13;11	n	0.00	0	8.5	0	10;7	n	0.00	0	12.5	0	14;11	n	0.00	0	10.0	0	14;6	n	ENSMUSG00000038535.18	Zfp280d	chr9	protein_coding	zinc finger protein 280D
novel_NIR_20643	chr9	72246146	72267568	+	72246146;72246330	72246294;72267568	ES	ENSMUST00000184399.8	novel	0.00	0	5.5	0	9;2	n	0.00	0	8.0	0	11;5	n	0.16	2	10.5	2	15;6	y	0.00	0	2.5	0	5;0	n	0.00	0	9.5	0	16;3	n	0.00	0	3.0	0	5;1	n	0.00	0	5.5	0	11;0	n	0.00	0	5.0	0	8;2	n	0.00	0	8.0	0	13;3	n	0.00	0	7.5	0	10;5	n	0.00	0	7.0	0	14;0	n	0.00	0	8.0	0	14;2	n	ENSMUSG00000038535.18	Zfp280d	chr9	protein_coding	zinc finger protein 280D
novel_NIR_20644	chr9	72439939	72440097	+	72439939	72440100	A3SS	ENSMUST00000184851.2	novel	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.11	1	8	1	8	n	0.00	0	3	0	3	n	0.18	2	9	2	9	y	0.33	1	2	1	2	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	ENSMUSG00000037674.16	Rfx7	chr9	protein_coding	regulatory factor X, 7
novel_NIR_20645	chr9	72887478;72889908	72889842;72892423	-	72887478	72892423	cassetteExon	ENSMUST00000124565.3	novel	0.12	4.0	29	6;2	29	n	0.33	11.5	23	12;11	23	y	0.12	2.5	19	3;2	19	n	0.09	3.0	29	4;2	29	n	0.23	5.0	17	4;6	17	y	0.16	3.5	18	6;1	18	n	0.24	10.0	31	9;11	31	y	0.17	2.5	12	2;3	12	y	0.25	8.0	24	6;10	24	y	0.10	3.5	33	3;4	33	n	0.15	5.0	29	8;2	29	y	0.21	7.5	29	9;6	29	y	ENSMUSG00000086158.3	Ccpg1os	chr9	protein_coding	cell cycle progression 1, opposite strand
novel_NIR_20646	chr9	72887478;72889912	72889842;72892423	-	72887478	72892423	cassetteExon	ENSMUST00000124565.3	novel	0.09	3.0	29	6;0	29	n	0.21	6.0	23	12;0	23	n	0.07	1.5	19	3;0	19	n	0.11	3.5	29	4;3	29	n	0.11	2.0	17	4;0	17	n	0.16	3.5	18	6;1	18	n	0.15	5.5	31	9;2	31	y	0.08	1.0	12	2;0	12	n	0.14	4.0	24	6;2	24	n	0.04	1.5	33	3;0	33	n	0.12	4.0	29	8;0	29	n	0.16	5.5	29	9;2	29	y	ENSMUSG00000086158.3	Ccpg1os	chr9	protein_coding	cell cycle progression 1, opposite strand
novel_NIR_20647	chr9	72891398	72892423	-	72887478	72892423	A3SS	ENSMUST00000124565.3	novel	0.00	0	29	0	29	n	0.00	0	23	0	23	n	0.00	0	19	0	19	n	0.00	0	29	0	29	n	0.19	4	17	4	17	y	0.05	1	18	1	18	n	0.03	1	31	1	31	n	0.08	1	12	1	12	n	0.00	0	24	0	24	n	0.03	1	33	1	33	n	0.00	0	29	0	29	n	0.03	1	29	1	29	n	ENSMUSG00000086158.3	Ccpg1os	chr9	protein_coding	cell cycle progression 1, opposite strand
novel_NIR_20648	chr9	72909157	72911388	+	72909157	72912937	A3SS	ENSMUST00000124008.2	novel	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.78	7	2	7	2	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.60	3	2	3	2	y	1.00	2	0	2	0	y	0.00	0	2	0	2	n	ENSMUSG00000034563.17	Ccpg1	chr9	protein_coding	cell cycle progression 1
novel_NIR_20649	chr9	72927450	72928568	-	72925365	72928568	A3SS	ENSMUST00000183746.8	novel	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.06	1	15	1	15	n	0.17	3	15	3	15	y	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.15	2	11	2	11	y	0.00	0	8	0	8	n	0.00	0	6	0	6	n	ENSMUSG00000079469.11	Pigb	chr9	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class B
novel_NIR_20650	chr9	74756493	74756953	+	74756493	74758043	A3SS	ENSMUST00000160979.9	novel	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.22	2	7	2	7	y	ENSMUSG00000066477.14	Gm16551	chr9	lncRNA	predicted gene 16551
novel_NIR_20651	chr9	74756493	74756953	+	74756493	74758082	A3SS	ENSMUST00000160017.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000066477.14	Gm16551	chr9	lncRNA	predicted gene 16551
novel_NIR_20652	chr9	74756493	74756953	+	74756493	74767164	A3SS	ENSMUST00000161862.8	novel	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.40	2	3	2	3	y	ENSMUSG00000066477.14	Gm16551	chr9	lncRNA	predicted gene 16551
novel_NIR_20653	chr9	74756493	74756953	+	74756493	74796588	A3SS	ENSMUST00000160950.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000093662.3	Gm20649	chr9	lncRNA	predicted gene 20649
novel_NIR_20654	chr9	74764687	74767164	+	74756493	74767164	A5SS	ENSMUST00000161862.8	novel	0.67	4	2	4	2	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.11	1	8	1	8	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.25	2	6	2	6	y	0.00	0	1	0	1	n	0.25	2	6	2	6	y	0.25	2	6	2	6	n	0.30	3	7	3	7	y	0.00	0	3	0	3	n	ENSMUSG00000066477.14	Gm16551	chr9	lncRNA	predicted gene 16551
novel_NIR_20655	chr9	74770683;74786360	74786286;74796588	+	74770683	74796588	cassetteExon	ENSMUST00000056006.11	novel	0.08	1.0	12	2;0	12	n	0.00	0.0	7	0;0	7	n	0.10	3.5	31	4;3	31	n	0.18	2.0	9	2;2	9	y	0.06	2.5	39	5;0	39	n	0.00	0.0	10	0;0	10	n	0.04	1.0	27	2;0	27	n	0.04	1.0	22	2;0	22	n	0.00	0.0	5	0;0	5	n	0.07	1.0	13	2;0	13	n	0.00	0.0	11	0;0	11	n	0.01	0.5	72	1;0	72	n	ENSMUSG00000043013.11	Onecut1	chr9	protein_coding	one cut domain, family member 1
novel_NIR_20656	chr9	74773921	74786286	+	74773921	74796588	A3SS	ENSMUST00000160499.3	novel	0.50	3	3	3	3	y	-	-	-	-	-	-	0.00	0	13	0	13	n	0.00	0	2	0	2	n	0.14	2	12	2	12	n	1.00	1	0	1	0	n	0.00	0	5	0	5	n	0.20	1	4	1	4	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.06	1	17	1	17	n	ENSMUSG00000043013.11	Onecut1	chr9	protein_coding	one cut domain, family member 1
novel_NIR_20657	chr9	74786360	74796588	+	74756493	74796588	A5SS	ENSMUST00000160950.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000093662.3	Gm20649	chr9	lncRNA	predicted gene 20649
novel_NIR_20658	chr9	74786360	74796588	+	74773921	74796588	A5SS	ENSMUST00000160499.3	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.19	3	13	3	13	y	0.50	2	2	2	2	y	0.00	0	12	0	12	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	17	0	17	n	ENSMUSG00000043013.11	Onecut1	chr9	protein_coding	one cut domain, family member 1
novel_NIR_20659	chr9	74945243	74959525	+	74945243	74950495	A3SS&ES	ENSMUST00000167885.8	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.67	4	2	4	2	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	10	0	10	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000007656.14	Arpp19	chr9	protein_coding	cAMP-regulated phosphoprotein 19
novel_NIR_20660	chr9	74945243	74959525	+	74945243	74963917	A3SS	ENSMUST00000169188.2	novel	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.40	4	6	4	6	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.56	10	8	10	8	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	12	0	12	n	ENSMUSG00000007656.14	Arpp19	chr9	protein_coding	cAMP-regulated phosphoprotein 19
novel_NIR_20661	chr9	75306033	75310448	-	75306033	75317137	A5SS	ENSMUST00000172665.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000042688.17	Mapk6	chr9	protein_coding	mitogen-activated protein kinase 6
novel_NIR_20662	chr9	7577752	7578109	+	7577756	7578109	A5SS	ENSMUST00000120900.8	novel	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	ENSMUSG00000070323.12	Mmp27	chr9	protein_coding	matrix metallopeptidase 27
novel_NIR_20663	chr9	75808202	75814316	-	75809145	75814316	A3SS	ENSMUST00000180749.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000097836.2	Gm26903	chr9	lncRNA	predicted gene, 26903
novel_NIR_20664	chr9	76143671	76144263	-	76143671	76153629	A5SS	ENSMUST00000063140.15	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	7	0	7	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000032360.17	Hcrtr2	chr9	protein_coding	hypocretin (orexin) receptor 2
novel_NIR_20665	chr9	77591209	77615081	-	77614198	77615081	3pMXE	ENSMUST00000214443.2	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000110838.2	Gm47789	chr9	lncRNA	predicted gene, 47789
novel_NIR_20666	chr9	77599768	77615081	-	77599768	77637453	A5SS	ENSMUST00000215521.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000111225.2	Gm47790	chr9	lncRNA	predicted gene, 47790
novel_NIR_20667	chr9	77599768	77615081	-	77614198	77615081	3pMXE	ENSMUST00000214443.2	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.43	3	4	3	4	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000110838.2	Gm47789	chr9	lncRNA	predicted gene, 47789
novel_NIR_20668	chr9	77614951	77615081	-	77614198	77615081	A3SS	ENSMUST00000214443.2	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	1.00	3	0	3	0	y	-	-	-	-	-	-	ENSMUSG00000110838.2	Gm47789	chr9	lncRNA	predicted gene, 47789
novel_NIR_20669	chr9	77671443	77682361	+	77671443;77673581	77673449;77682361	ES	ENSMUST00000216315.2	novel	1.00	4	0.0	4	0;0	y	0.00	0	0.5	0	0;1	n	1.00	1	0.0	1	0;0	n	0.86	3	0.5	3	1;0	y	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	0.00	0	3.5	0	1;6	n	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	ENSMUSG00000032350.10	Gclc	chr9	protein_coding	glutamate-cysteine ligase, catalytic subunit
novel_NIR_20670	chr9	77671443	77682361	+	77673587	77682361	5pMXE	ENSMUST00000216848.2	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000032350.10	Gclc	chr9	protein_coding	glutamate-cysteine ligase, catalytic subunit
novel_NIR_20671	chr9	77825075	77864423	+	77829303	77864423	5pMXE	ENSMUST00000133757.8	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032349.14	Elovl5	chr9	protein_coding	ELOVL family member 5, elongation of long chain fatty acids (yeast)
novel_NIR_20672	chr9	77825075	77864423	+	77848696	77864423	5pMXE	ENSMUST00000134072.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032349.14	Elovl5	chr9	protein_coding	ELOVL family member 5, elongation of long chain fatty acids (yeast)
novel_NIR_20673	chr9	77834679	77864423	+	77829303	77864423	A5SS	ENSMUST00000133757.8	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	1.00	5	0	5	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000032349.14	Elovl5	chr9	protein_coding	ELOVL family member 5, elongation of long chain fatty acids (yeast)
novel_NIR_20674	chr9	77834679	77864423	+	77848696	77864423	5pMXE	ENSMUST00000134072.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000032349.14	Elovl5	chr9	protein_coding	ELOVL family member 5, elongation of long chain fatty acids (yeast)
novel_NIR_20675	chr9	78011632	78016284	-	78011636	78016284	A3SS	ENSMUST00000001402.14	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000001366.15	Fbxo9	chr9	protein_coding	f-box protein 9
novel_NIR_20676	chr9	78016763	78032238	+	78016763	78038577	A3SS	ENSMUST00000118869.8	novel	0.10	1	9	1	9	n	0.31	4	9	4	9	y	0.00	0	24	0	24	n	0.21	3	11	3	11	y	0.05	1	21	1	21	n	0.35	12	22	12	22	y	0.17	3	15	3	15	y	0.19	6	26	6	26	y	0.17	3	15	3	15	y	0.33	5	10	5	10	y	0.00	0	2	0	2	n	0.27	4	11	4	11	y	ENSMUSG00000009828.16	Cilk1	chr9	protein_coding	ciliogenesis associated kinase 1
novel_NIR_20677	chr9	78016763	78032238	+	78020737	78032238	5pMXE	ENSMUST00000009972.6	novel	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	0.50	1	1	1	1	n	1.00	12	0	12	0	y	0.75	3	1	3	1	y	1.00	6	0	6	0	y	1.00	3	0	3	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	0.67	4	2	4	2	y	ENSMUSG00000009828.16	Cilk1	chr9	protein_coding	ciliogenesis associated kinase 1
novel_NIR_20678	chr9	78017305	78032238	+	78017305	78020601	3pMXE	ENSMUST00000125615.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000009828.16	Cilk1	chr9	protein_coding	ciliogenesis associated kinase 1
novel_NIR_20679	chr9	78017305	78032238	+	78020737	78032238	5pMXE	ENSMUST00000009972.6	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	ENSMUSG00000009828.16	Cilk1	chr9	protein_coding	ciliogenesis associated kinase 1
novel_NIR_20680	chr9	78020737	78025552	+	78020737	78025630	A3SS	ENSMUST00000149821.2	novel	0.33	1	2	1	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000009828.16	Cilk1	chr9	protein_coding	ciliogenesis associated kinase 1
novel_NIR_20681	chr9	78020737	78025552	+	78020737	78032238	A3SS	ENSMUST00000009972.6	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000009828.16	Cilk1	chr9	protein_coding	ciliogenesis associated kinase 1
novel_NIR_20682	chr9	78083317	78083857	+	78083317	78083853	A3SS	ENSMUST00000180974.2	novel	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.22	2	7	2	7	y	0.00	0	4	0	4	n	0.10	1	9	1	9	n	0.12	1	7	1	7	n	0.00	0	8	0	8	n	0.20	3	12	3	12	y	ENSMUSG00000097574.3	C920006O11Rik	chr9	transcribed_unprocessed_pseudogene	RIKEN cDNA C920006O11 gene
novel_NIR_20683	chr9	78083416	78083853	+	78083317	78083853	A5SS	ENSMUST00000180974.2	novel	0.57	4	3	4	3	y	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.25	2	6	2	6	y	0.50	2	2	2	2	y	0.29	2	5	2	5	y	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	ENSMUSG00000097574.3	C920006O11Rik	chr9	transcribed_unprocessed_pseudogene	RIKEN cDNA C920006O11 gene
novel_NIR_20684	chr9	78249879	78262698	-	78249879	78254371	5pMXE	ENSMUST00000129247.2	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.40	2	3	2	3	y	0.06	2	31	2	31	n	ENSMUSG00000057933.11	Gsta2	chr9	protein_coding	glutathione S-transferase, alpha 2 (Yc2)
novel_NIR_20685	chr9	78249879	78262698	-	78249879	78262941	A5SS	ENSMUST00000125479.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.40	2	3	2	3	y	0.29	2	5	2	5	n	ENSMUSG00000057933.11	Gsta2	chr9	protein_coding	glutathione S-transferase, alpha 2 (Yc2)
novel_NIR_20686	chr9	78309763	78318874	+	78309763;78313714	78313633;78318874	ES	ENSMUST00000113367.2	novel	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000070291.5	Ddx43	chr9	protein_coding	DEAD box helicase 43
novel_NIR_20687	chr9	78357117	78360049	+	78357117	78364492	A3SS	ENSMUST00000148238.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.57	4	3	4	3	y	ENSMUSG00000032342.14	Mto1	chr9	protein_coding	mitochondrial tRNA translation optimization 1
novel_NIR_20688	chr9	78365329	78368104	+	78365329	78368115	A3SS	ENSMUST00000034896.13	novel	0.19	6	26	6	26	y	0.12	5	37	5	37	n	0.12	2	14	2	14	n	0.00	0	23	0	23	n	0.03	1	28	1	28	n	0.23	5	17	5	17	y	0.03	1	38	1	38	n	0.20	3	12	3	12	y	0.00	0	32	0	32	n	0.04	2	50	2	50	n	0.03	1	29	1	29	n	0.03	1	35	1	35	n	ENSMUSG00000032342.14	Mto1	chr9	protein_coding	mitochondrial tRNA translation optimization 1
novel_NIR_20689	chr9	78387970	78388261	-	78387970	78396356	A5SS	ENSMUST00000154207.8	novel	0.33	3	6	3	6	y	0.67	4	2	4	2	y	1.00	8	0	8	0	y	0.44	4	5	4	5	y	0.67	6	3	6	3	y	0.29	2	5	2	5	y	0.67	2	1	2	1	y	0.43	3	4	3	4	y	0.25	2	6	2	6	y	0.33	2	4	2	4	y	1.00	3	0	3	0	y	0.71	5	2	5	2	y	ENSMUSG00000037742.15	Eef1a1	chr9	protein_coding	eukaryotic translation elongation factor 1 alpha 1
novel_NIR_20690	chr9	78387970;78395608	78395532;78396356	-	78387970	78396356	cassetteExon	ENSMUST00000154207.8	novel	0.08	0.5	6	0;1	6	n	0.56	2.5	2	0;5	2	n	1.00	1.5	0	1;2	0	n	0.29	2.0	5	0;4	5	n	0.45	2.5	3	2;3	3	y	0.17	1.0	5	0;2	5	n	0.33	0.5	1	1;0	1	n	0.27	1.5	4	1;2	4	n	0.20	1.5	6	0;3	6	n	0.20	1.0	4	0;2	4	n	-	-	-	-	-	-	0.50	2.0	2	0;4	2	n	ENSMUSG00000037742.15	Eef1a1	chr9	protein_coding	eukaryotic translation elongation factor 1 alpha 1
novel_NIR_20691	chr9	78395608	78396356	-	78387970	78396356	A3SS	ENSMUST00000154207.8	novel	0.14	1	6	1	6	n	0.71	5	2	5	2	y	1.00	2	0	2	0	n	0.44	4	5	4	5	y	0.50	3	3	3	3	n	0.29	2	5	2	5	y	0.00	0	1	0	1	n	0.33	2	4	2	4	n	0.33	3	6	3	6	y	0.33	2	4	2	4	y	-	-	-	-	-	-	0.67	4	2	4	2	y	ENSMUSG00000037742.15	Eef1a1	chr9	protein_coding	eukaryotic translation elongation factor 1 alpha 1
novel_NIR_20692	chr9	78468082	78478304	-	78477226	78478304	3pMXE	ENSMUST00000119213.3	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	9	0	9	n	0.50	3	3	3	3	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000049624.15	Slc17a5	chr9	protein_coding	solute carrier family 17 (anion/sugar transporter), member 5
novel_NIR_20693	chr9	7861408	7865385	-	7861408	7872824	A5SS	ENSMUST00000013949.15	novel	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.12	2	15	2	15	n	0.17	1	5	1	5	n	0.05	1	18	1	18	n	0.25	1	3	1	3	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.25	3	9	3	9	y	ENSMUSG00000032000.18	Birc3	chr9	protein_coding	baculoviral IAP repeat-containing 3
novel_NIR_20694	chr9	7861408	7865385	-	7861408	7872991	A5SS	ENSMUST00000115673.3	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.33	2	4	2	4	y	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000032000.18	Birc3	chr9	protein_coding	baculoviral IAP repeat-containing 3
novel_NIR_20695	chr9	7861408	7865385	-	7861408	7873057	A5SS	ENSMUST00000159323.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000032000.18	Birc3	chr9	protein_coding	baculoviral IAP repeat-containing 3
novel_NIR_20696	chr9	7861408	7865896	-	7861408	7872824	A5SS	ENSMUST00000013949.15	novel	0.33	2	4	2	4	y	0.33	1	2	1	2	n	0.32	7	15	7	15	y	0.29	2	5	2	5	y	0.18	4	18	4	18	y	0.50	3	3	3	3	y	0.20	2	8	2	8	y	0.56	5	4	5	4	y	0.40	4	6	4	6	y	0.21	3	11	3	11	y	0.50	2	2	2	2	y	0.00	0	9	0	9	n	ENSMUSG00000032000.18	Birc3	chr9	protein_coding	baculoviral IAP repeat-containing 3
novel_NIR_20697	chr9	7861408	7865896	-	7861408	7872991	A5SS	ENSMUST00000115673.3	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.64	7	4	7	4	y	0.67	2	1	2	1	y	1.00	4	0	4	0	y	1.00	3	0	3	0	y	0.67	2	1	2	1	y	1.00	5	0	5	0	y	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000032000.18	Birc3	chr9	protein_coding	baculoviral IAP repeat-containing 3
novel_NIR_20698	chr9	7861408	7865896	-	7861408	7873057	A5SS	ENSMUST00000159323.2	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	7	0	7	0	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000032000.18	Birc3	chr9	protein_coding	baculoviral IAP repeat-containing 3
novel_NIR_20699	chr9	7861408	7867742	-	7861408	7872824	A5SS	ENSMUST00000013949.15	novel	0.33	2	4	2	4	y	0.33	1	2	1	2	n	0.00	0	15	0	15	n	0.00	0	5	0	5	n	0.05	1	18	1	18	n	0.25	1	3	1	3	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.08	1	11	1	11	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	ENSMUSG00000032000.18	Birc3	chr9	protein_coding	baculoviral IAP repeat-containing 3
novel_NIR_20700	chr9	7861408	7867742	-	7861408	7872991	A5SS	ENSMUST00000115673.3	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032000.18	Birc3	chr9	protein_coding	baculoviral IAP repeat-containing 3
novel_NIR_20701	chr9	7861408	7867742	-	7861408	7873057	A5SS	ENSMUST00000159323.2	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032000.18	Birc3	chr9	protein_coding	baculoviral IAP repeat-containing 3
novel_NIR_20702	chr9	7870692	7872824	-	7861408	7872824	A3SS	ENSMUST00000013949.15	novel	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.21	4	15	4	15	y	0.17	1	5	1	5	n	0.18	4	18	4	18	y	0.25	1	3	1	3	n	0.00	0	8	0	8	n	0.50	4	4	4	4	y	0.25	2	6	2	6	y	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	ENSMUSG00000032000.18	Birc3	chr9	protein_coding	baculoviral IAP repeat-containing 3
novel_NIR_20703	chr9	7870692	7872824	-	7866518	7872824	A3SS	ENSMUST00000161099.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032000.18	Birc3	chr9	protein_coding	baculoviral IAP repeat-containing 3
novel_NIR_20704	chr9	7870692	7872824	-	7868928	7872824	A3SS	ENSMUST00000159672.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032000.18	Birc3	chr9	protein_coding	baculoviral IAP repeat-containing 3
novel_NIR_20705	chr9	7938539	7952942	-	7938539	7939141	A5SS&ES	ENSMUST00000173264.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000053110.14	Yap1	chr9	protein_coding	yes-associated protein 1
novel_NIR_20706	chr9	7950540	7952942	-	7950540	7952954	A5SS	ENSMUST00000065353.13	novel	0.04	1	26	1	26	n	0.00	0	22	0	22	n	0.00	0	56	0	56	n	0.00	0	43	0	43	n	0.00	0	71	0	71	n	0.17	5	25	5	25	y	0.03	2	57	2	57	n	0.00	0	41	0	41	n	0.02	1	46	1	46	n	0.03	2	68	2	68	n	0.00	0	42	0	42	n	0.00	0	65	0	65	n	ENSMUSG00000053110.14	Yap1	chr9	protein_coding	yes-associated protein 1
novel_NIR_20707	chr9	79517149	79517587	-	79517149	79519678	A5SS	ENSMUST00000135009.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000032332.18	Col12a1	chr9	protein_coding	collagen, type XII, alpha 1
novel_NIR_20708	chr9	79599714	79600548	-	79599714	79600646	A5SS	ENSMUST00000071750.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.80	4	1	4	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000032332.18	Col12a1	chr9	protein_coding	collagen, type XII, alpha 1
novel_NIR_20709	chr9	79665861	79666554	-	79665861	79666432	5pMXE	ENSMUST00000215933.2	novel	0.25	3	9	3	9	y	0.17	1	5	1	5	n	0.21	6	23	6	23	y	0.29	2	5	2	5	y	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.20	2	8	2	8	y	0.33	1	2	1	2	n	0.07	1	13	1	13	n	0.20	4	16	4	16	y	0.10	2	19	2	19	n	0.11	3	24	3	24	n	ENSMUSG00000032330.8	Cox7a2	chr9	protein_coding	cytochrome c oxidase subunit 7A2
novel_NIR_20710	chr9	79665861	79666621	-	79665861	79666432	5pMXE	ENSMUST00000215933.2	novel	0.10	1	9	1	9	n	0.17	1	5	1	5	n	0.04	1	23	1	23	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.27	3	8	3	8	y	0.33	1	2	1	2	n	0.13	2	13	2	13	n	0.20	4	16	4	16	y	0.32	9	19	9	19	y	0.11	3	24	3	24	n	ENSMUSG00000032330.8	Cox7a2	chr9	protein_coding	cytochrome c oxidase subunit 7A2
novel_NIR_20711	chr9	79665861	79666628	-	79665861	79666432	5pMXE	ENSMUST00000215933.2	novel	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.04	1	23	1	23	n	0.62	8	5	8	5	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.07	1	13	1	13	n	0.00	0	16	0	16	n	0.00	0	19	0	19	n	0.04	1	24	1	24	n	ENSMUSG00000032330.8	Cox7a2	chr9	protein_coding	cytochrome c oxidase subunit 7A2
novel_NIR_20712	chr9	79665861	79666756	-	79665861	79666432	5pMXE	ENSMUST00000215933.2	novel	0.00	0	9	0	9	n	0.17	1	5	1	5	n	0.34	12	23	12	23	y	0.55	6	5	6	5	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.20	2	8	2	8	y	0.00	0	2	0	2	n	0.07	1	13	1	13	n	0.16	3	16	3	16	y	0.05	1	19	1	19	n	0.00	0	24	0	24	n	ENSMUSG00000032330.8	Cox7a2	chr9	protein_coding	cytochrome c oxidase subunit 7A2
novel_NIR_20713	chr9	79665861	79681459	-	79665861	79666432	5pMXE	ENSMUST00000215933.2	novel	0.18	2	9	2	9	y	0.00	0	5	0	5	n	0.00	0	23	0	23	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	13	0	13	n	0.00	0	16	0	16	n	0.00	0	19	0	19	n	0.00	0	24	0	24	n	ENSMUSG00000032330.8	Cox7a2	chr9	protein_coding	cytochrome c oxidase subunit 7A2
novel_NIR_20714	chr9	79692700	79700256	-	79684613	79700256	A3SS	ENSMUST00000120690.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000032328.13	Tmem30a	chr9	protein_coding	transmembrane protein 30A
novel_NIR_20715	chr9	79974854	79997131	+	79974854	79994712	A3SS&ES	ENSMUST00000175999.8	novel	0.05	1	18	1	18	n	0.20	1	4	1	4	n	0.10	3	27	3	27	n	0.06	1	17	1	17	n	0.09	3	29	3	29	n	0.08	1	12	1	12	n	0.00	0	20	0	20	n	0.00	0	15	0	15	n	0.10	1	9	1	9	n	0.05	1	18	1	18	n	0.33	4	8	4	8	y	0.09	2	21	2	21	n	ENSMUSG00000034252.15	Senp6	chr9	protein_coding	SUMO/sentrin specific peptidase 6
novel_NIR_20716	chr9	79974854	79997131	+	79974854	79999549	A3SS	ENSMUST00000176640.8	novel	0.25	1	3	1	3	n	0.20	1	4	1	4	n	0.20	3	12	3	12	y	0.05	1	18	1	18	n	0.17	3	15	3	15	y	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.12	1	7	1	7	n	0.07	1	13	1	13	n	0.31	4	9	4	9	y	0.11	2	16	2	16	n	ENSMUSG00000034252.15	Senp6	chr9	protein_coding	SUMO/sentrin specific peptidase 6
novel_NIR_20717	chr9	79974854	79997131	+	79974854	80010976	A3SS	ENSMUST00000164859.8	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.75	3	1	3	1	y	1.00	1	0	1	0	n	0.75	3	1	3	1	y	0.25	1	3	1	3	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	2	0	2	0	y	ENSMUSG00000034252.15	Senp6	chr9	protein_coding	SUMO/sentrin specific peptidase 6
novel_NIR_20718	chr9	79974854	79997131	+	79974854;79994805	79994712;79997131	ES	ENSMUST00000175673.2	novel	0.04	1	22.5	1	18;27	n	0.12	1	7.5	1	4;11	n	0.09	3	31.0	3	27;35	n	0.04	1	24.0	1	17;31	n	0.09	3	31.0	3	29;33	n	0.05	1	18.5	1	12;25	n	0.00	0	25.0	0	20;30	n	0.00	0	18.5	0	15;22	n	0.09	1	10.5	1	9;12	n	0.03	1	29.0	1	18;40	n	0.30	4	9.5	4	8;11	y	0.06	2	29.0	2	21;37	n	ENSMUSG00000034252.15	Senp6	chr9	protein_coding	SUMO/sentrin specific peptidase 6
novel_NIR_20719	chr9	80201256	80206428	+	80199799	80206428	A5SS	ENSMUST00000035889.15	novel	-	-	-	-	-	-	0.50	1	1	1	1	n	0.50	4	4	4	4	y	0.88	7	1	7	1	y	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.80	4	1	4	1	y	0.50	1	1	1	1	n	0.86	6	1	6	1	y	0.00	0	5	0	5	n	0.71	5	2	5	2	y	1.00	5	0	5	0	y	ENSMUSG00000033577.19	Myo6	chr9	protein_coding	myosin VI
novel_NIR_20720	chr9	80201256	80206428	+	80201256;80203963	80203925;80206428	ES	ENSMUST00000184480.8	novel	0.00	0	35.0	0	35;35	n	0.04	1	21.5	1	23;20	n	0.13	4	26.5	4	26;27	n	0.13	7	45.5	7	48;43	n	0.05	2	41.0	2	38;44	n	0.00	0	10.0	0	10;10	n	0.09	4	41.0	4	38;44	n	0.05	1	19.5	1	19;20	n	0.17	6	29.5	6	27;32	y	0.00	0	56.0	0	46;66	n	0.10	5	45.0	5	45;45	n	0.10	5	43.5	5	41;46	n	ENSMUSG00000033577.19	Myo6	chr9	protein_coding	myosin VI
novel_NIR_20721	chr9	80201256	80206428	+	80203963	80206428	A5SS&ES	ENSMUST00000113268.8	novel	0.00	0	35	0	35	n	0.05	1	20	1	20	n	0.13	4	27	4	27	n	0.14	7	43	7	43	n	0.04	2	44	2	44	n	0.00	0	10	0	10	n	0.08	4	44	4	44	n	0.05	1	20	1	20	n	0.16	6	32	6	32	y	0.00	0	66	0	66	n	0.10	5	45	5	45	n	0.10	5	46	5	46	n	ENSMUSG00000033577.19	Myo6	chr9	protein_coding	myosin VI
novel_NIR_20722	chr9	80202643	80203925	+	80199799	80203925	A5SS	ENSMUST00000076140.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000033577.19	Myo6	chr9	protein_coding	myosin VI
novel_NIR_20723	chr9	80202643	80203925	+	80200835	80203925	A5SS	ENSMUST00000113268.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000033577.19	Myo6	chr9	protein_coding	myosin VI
novel_NIR_20724	chr9	82759395	82759971	-	82759395	82762165	A5SS	ENSMUST00000034787.12	novel	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.22	2	7	2	7	y	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	ENSMUSG00000032253.14	Phip	chr9	protein_coding	pleckstrin homology domain interacting protein
novel_NIR_20725	chr9	83002476	83132027	-	83002476	83028484	5pMXE	ENSMUST00000187193.7	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.40	2	3	2	3	y	-	-	-	-	-	-	0.50	1	1	1	1	n	0.25	1	3	1	3	n	1.00	1	0	1	0	n	0.60	3	2	3	2	y	-	-	-	-	-	-	0.71	5	2	5	2	y	ENSMUSG00000066456.15	Hmgn3	chr9	protein_coding	high mobility group nucleosomal binding domain 3
novel_NIR_20726	chr9	83002476	83135676	-	83002476	83028484	5pMXE	ENSMUST00000187193.7	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	2	0	2	0	y	0.33	1	2	1	2	n	ENSMUSG00000066456.15	Hmgn3	chr9	protein_coding	high mobility group nucleosomal binding domain 3
novel_NIR_20727	chr9	83132136	83135676	-	83123229	83135676	A3SS	ENSMUST00000184080.2	novel	0.00	0	15	0	15	n	0.00	0	25	0	25	n	0.00	0	17	0	17	n	0.00	0	22	0	22	n	0.21	3	11	3	11	y	0.00	0	7	0	7	n	0.00	0	30	0	30	n	0.18	2	9	2	9	y	0.00	0	14	0	14	n	0.04	1	25	1	25	n	0.00	0	15	0	15	n	0.00	0	28	0	28	n	ENSMUSG00000098747.8	Gm27216	chr9	lncRNA	predicted gene 27216
novel_NIR_20728	chr9	83135735	83136138	-	83135735	83135997	5pMXE	ENSMUST00000184605.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000098747.8	Gm27216	chr9	lncRNA	predicted gene 27216
novel_NIR_20729	chr9	83416441	83459489	+	83458963	83459489	5pMXE	ENSMUST00000185664.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032261.17	Sh3bgrl2	chr9	protein_coding	SH3 domain binding glutamic acid-rich protein like 2
novel_NIR_20730	chr9	83807412	83951158	+	83917930	83951158	5pMXE	ENSMUST00000189819.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032263.15	Bckdhb	chr9	protein_coding	branched chain ketoacid dehydrogenase E1, beta polypeptide
novel_NIR_20731	chr9	83807412	83951158	+	83927972	83951158	5pMXE	ENSMUST00000188200.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032263.15	Bckdhb	chr9	protein_coding	branched chain ketoacid dehydrogenase E1, beta polypeptide
novel_NIR_20732	chr9	83873875	83951158	+	83917930	83951158	5pMXE	ENSMUST00000189819.7	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000032263.15	Bckdhb	chr9	protein_coding	branched chain ketoacid dehydrogenase E1, beta polypeptide
novel_NIR_20733	chr9	83873875	83951158	+	83927972	83951158	5pMXE	ENSMUST00000188200.7	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000032263.15	Bckdhb	chr9	protein_coding	branched chain ketoacid dehydrogenase E1, beta polypeptide
novel_NIR_20734	chr9	83892404	83951158	+	83917930	83951158	5pMXE	ENSMUST00000189819.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032263.15	Bckdhb	chr9	protein_coding	branched chain ketoacid dehydrogenase E1, beta polypeptide
novel_NIR_20735	chr9	83892404	83951158	+	83927972	83951158	5pMXE	ENSMUST00000188200.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032263.15	Bckdhb	chr9	protein_coding	branched chain ketoacid dehydrogenase E1, beta polypeptide
novel_NIR_20736	chr9	83894672	84004287	+	83989680	84004287	5pMXE	ENSMUST00000186136.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	ENSMUSG00000032263.15	Bckdhb	chr9	protein_coding	branched chain ketoacid dehydrogenase E1, beta polypeptide
novel_NIR_20737	chr9	83909127	83951158	+	83917930	83951158	5pMXE	ENSMUST00000189819.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032263.15	Bckdhb	chr9	protein_coding	branched chain ketoacid dehydrogenase E1, beta polypeptide
novel_NIR_20738	chr9	83909127	83951158	+	83927972	83951158	5pMXE	ENSMUST00000188200.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032263.15	Bckdhb	chr9	protein_coding	branched chain ketoacid dehydrogenase E1, beta polypeptide
novel_NIR_20739	chr9	85604469	85606100	-	85603399	85606100	A3SS	ENSMUST00000187521.7	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035941.16	Ibtk	chr9	protein_coding	inhibitor of Bruton agammaglobulinemia tyrosine kinase
novel_NIR_20740	chr9	85604502	85606100	-	85603399	85606100	A3SS	ENSMUST00000187521.7	novel	0.75	12	4	12	4	y	1.00	8	0	8	0	y	1.00	41	0	41	0	y	1.00	34	0	34	0	y	0.90	45	5	45	5	y	1.00	27	0	27	0	y	1.00	32	0	32	0	y	0.93	25	2	25	2	y	0.87	20	3	20	3	y	1.00	25	0	25	0	y	1.00	19	0	19	0	y	1.00	18	0	18	0	y	ENSMUSG00000035941.16	Ibtk	chr9	protein_coding	inhibitor of Bruton agammaglobulinemia tyrosine kinase
novel_NIR_20741	chr9	85604502	85606100	-	85604505	85606100	A3SS	ENSMUST00000039213.15	novel	0.23	12	41	12	41	y	0.20	8	32	8	32	y	0.24	41	131	41	131	y	0.31	34	74	34	74	y	0.25	45	132	45	132	y	0.28	27	69	27	69	y	0.32	32	68	32	68	y	0.31	25	55	25	55	y	0.32	20	42	20	42	y	0.23	25	85	25	85	y	0.30	19	44	19	44	y	0.20	18	74	18	74	y	ENSMUSG00000035941.16	Ibtk	chr9	protein_coding	inhibitor of Bruton agammaglobulinemia tyrosine kinase
novel_NIR_20742	chr9	86322807	86346794	-	86322807;86334063	86333867;86346794	ES	ENSMUST00000121189.3	novel	0.00	0	3.0	0	0;6	n	0.80	4	1.0	4	0;2	y	0.00	0	3.0	0	0;6	n	0.20	1	4.0	1	0;8	n	-	-	-	-	-	-	0.00	0	0.5	0	0;1	n	0.00	0	2.0	0	0;4	n	0.00	0	3.0	0	0;6	n	0.67	1	0.5	1	0;1	n	0.33	1	2.0	1	0;4	n	0.00	0	0.5	0	0;1	n	0.29	1	2.5	1	0;5	n	ENSMUSG00000032415.15	Ube2cbp	chr9	protein_coding	ubiquitin-conjugating enzyme E2C binding protein
novel_NIR_20743	chr9	86389790	86392668	+	86389790	86394611	A3SS	ENSMUST00000188675.7	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.19	3	13	3	13	y	0.00	0	3	0	3	n	0.25	2	6	2	6	y	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.25	1	3	1	3	n	ENSMUSG00000034973.17	Dop1a	chr9	protein_coding	DOP1 leucine zipper like protein A
novel_NIR_20744	chr9	86389790	86392668	+	86389790	86394614	A3SS	ENSMUST00000190957.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.60	3	2	3	2	y	-	-	-	-	-	-	0.25	2	6	2	6	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.25	1	3	1	3	n	ENSMUSG00000034973.17	Dop1a	chr9	protein_coding	DOP1 leucine zipper like protein A
novel_NIR_20745	chr9	86392804	86394611	+	86389790	86394611	A5SS	ENSMUST00000188675.7	novel	0.40	2	3	2	3	y	1.00	2	0	2	0	y	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000034973.17	Dop1a	chr9	protein_coding	DOP1 leucine zipper like protein A
novel_NIR_20746	chr9	86427446	86430293	+	86427446	86430854	A3SS	ENSMUST00000189817.7	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	ENSMUSG00000034973.17	Dop1a	chr9	protein_coding	DOP1 leucine zipper like protein A
novel_NIR_20747	chr9	86439674	86440448	-	86438418	86440448	A3SS	ENSMUST00000072585.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	8	0	8	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000056131.14	Pgm3	chr9	protein_coding	phosphoglucomutase 3
novel_NIR_20748	chr9	86562005	86577209	-	86562005	86569011	5pMXE	ENSMUST00000185374.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032418.16	Me1	chr9	protein_coding	malic enzyme 1, NADP(+)-dependent, cytosolic
novel_NIR_20749	chr9	88216556	88234316	+	88210083	88234316	A5SS	ENSMUST00000034992.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.40	2	3	2	3	y	0.00	0	8	0	8	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	14	0	14	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000032420.9	Nt5e	chr9	protein_coding	5' nucleotidase, ecto
novel_NIR_20750	chr9	88280421	88283973	-	88282802	88283973	A3SS&ES	ENSMUST00000174806.9	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000032422.19	Snx14	chr9	protein_coding	sorting nexin 14
novel_NIR_20751	chr9	88336345	88338274	-	88336345	88338416	A5SS	ENSMUST00000173131.8	novel	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	22	0	22	n	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.14	2	12	2	12	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.20	2	8	2	8	y	0.10	1	9	1	9	n	ENSMUSG00000092541.8	Gm20537	chr9	protein_coding	predicted gene 20537
novel_NIR_20752	chr9	88346836	88355224	-	88346836	88358842	A5SS	ENSMUST00000069221.12	novel	0.15	8	45	8	45	y	0.06	2	31	2	31	n	0.03	3	92	3	92	n	0.02	1	49	1	49	n	0.06	5	77	5	77	n	0.02	1	62	1	62	n	0.06	3	49	3	49	n	0.01	1	69	1	69	n	0.02	1	42	1	42	n	0.00	0	56	0	56	n	0.00	0	31	0	31	n	0.00	0	59	0	59	n	ENSMUSG00000032423.13	Syncrip	chr9	protein_coding	synaptotagmin binding, cytoplasmic RNA interacting protein
novel_NIR_20753	chr9	88346836	88355224	-	88346836	88361624	A5SS	ENSMUST00000174145.2	novel	1.00	8	0	8	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032423.13	Syncrip	chr9	protein_coding	synaptotagmin binding, cytoplasmic RNA interacting protein
novel_NIR_20754	chr9	88430353	88430442	+	88430353	88434769	A3SS	ENSMUST00000160652.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032425.16	Zfp949	chr9	protein_coding	zinc finger protein 949
novel_NIR_20755	chr9	88481152	88481411	-	88481152	88481269	5pMXE	ENSMUST00000180723.8	novel	1.00	6	0	6	0	y	1.00	2	0	2	0	y	0.86	6	1	6	1	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	0.92	11	1	11	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000097073.8	9430037G07Rik	chr9	lncRNA	RIKEN cDNA 9430037G07 gene
novel_NIR_20756	chr9	88481152	88481411	-	88481152	88481517	A5SS	ENSMUST00000180982.2	novel	1.00	6	0	6	0	y	1.00	2	0	2	0	y	0.86	6	1	6	1	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	11	0	11	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	ENSMUSG00000097073.8	9430037G07Rik	chr9	lncRNA	RIKEN cDNA 9430037G07 gene
novel_NIR_20757	chr9	88571038	88576313	-	88571038	88601542	A5SS	ENSMUST00000186721.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	0.83	5	1	5	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000079427.11	Mthfsl	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase-like
novel_NIR_20758	chr9	88571038	88576313	-	88576186	88576313	3pMXE	ENSMUST00000190027.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	2	0	2	n	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000079427.11	Mthfsl	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase-like
novel_NIR_20759	chr9	88571038	88585979	-	88571038	88597541	A5SS	ENSMUST00000113110.5	novel	0.13	7	48	7	48	n	0.09	6	62	6	62	n	0.17	21	99	21	99	n	0.10	7	62	7	62	n	0.10	10	89	10	89	n	0.07	3	42	3	42	n	0.07	7	88	7	88	n	0.02	1	40	1	40	n	0.11	7	55	7	55	n	0.16	14	72	14	72	y	0.07	5	63	5	63	n	0.18	14	65	14	65	n	ENSMUSG00000079427.11	Mthfsl	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase-like
novel_NIR_20760	chr9	88571038	88585979	-	88571038	88597541	A5SS	ENSMUST00000185519.7	novel	0.13	7	48	7	48	n	0.09	6	62	6	62	n	0.17	21	99	21	99	y	0.10	7	62	7	62	n	0.10	10	89	10	89	n	0.07	3	42	3	42	n	0.07	7	88	7	88	n	0.02	1	40	1	40	n	0.11	7	55	7	55	n	0.16	14	72	14	72	n	0.07	5	63	5	63	n	0.18	14	65	14	65	y	ENSMUSG00000079427.11	Mthfsl	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase-like
novel_NIR_20761	chr9	88571038	88585979	-	88571038	88601542	A5SS	ENSMUST00000186721.2	novel	1.00	7	0	7	0	y	1.00	6	0	6	0	y	1.00	21	0	21	0	y	1.00	7	0	7	0	y	0.91	10	1	10	1	y	1.00	3	0	3	0	y	1.00	7	0	7	0	y	1.00	1	0	1	0	n	1.00	7	0	7	0	y	1.00	14	0	14	0	y	1.00	5	0	5	0	y	1.00	14	0	14	0	y	ENSMUSG00000079427.11	Mthfsl	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase-like
novel_NIR_20762	chr9	88571038	88590894	-	88571038	88601542	A5SS	ENSMUST00000186721.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	ENSMUSG00000079427.11	Mthfsl	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase-like
novel_NIR_20763	chr9	88571038;88597802	88597577;88601542	-	88571038	88601542	cassetteExon	ENSMUST00000186721.2	novel	1.00	10.0	0	0;20	0	n	1.00	7.5	0	0;15	0	n	1.00	7.0	0	0;14	0	n	1.00	13.0	0	0;26	0	n	0.94	14.5	1	3;26	1	y	1.00	5.0	0	0;10	0	n	1.00	8.5	0	0;17	0	n	1.00	6.5	0	0;13	0	n	1.00	9.0	0	0;18	0	n	1.00	14.0	0	0;28	0	n	1.00	9.0	0	0;18	0	n	1.00	11.0	0	0;22	0	n	ENSMUSG00000079427.11	Mthfsl	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase-like
novel_NIR_20764	chr9	88571038;88597802	88597644;88601542	-	88571038	88601542	cassetteExon	ENSMUST00000186721.2	novel	1.00	10.0	0	0;20	0	n	1.00	8.5	0	2;15	0	y	1.00	8.0	0	2;14	0	y	1.00	13.0	0	0;26	0	n	0.93	13.0	1	0;26	1	n	1.00	6.0	0	2;10	0	y	1.00	9.0	0	1;17	0	n	1.00	6.5	0	0;13	0	n	1.00	9.0	0	0;18	0	n	1.00	14.0	0	0;28	0	n	1.00	9.0	0	0;18	0	n	1.00	11.5	0	1;22	0	n	ENSMUSG00000079427.11	Mthfsl	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase-like
novel_NIR_20765	chr9	88576385	88597541	-	88586189	88597541	3pMXE	ENSMUST00000191235.2	novel	0.00	0	2	0	2	n	0.25	2	6	2	6	y	0.00	0	12	0	12	n	0.75	3	1	3	1	y	0.25	2	6	2	6	y	0.00	0	6	0	6	n	0.50	3	3	3	3	y	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.09	1	10	1	10	n	ENSMUSG00000079427.11	Mthfsl	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase-like
novel_NIR_20766	chr9	88576385;88597802	88597541;88601542	-	88576385;88586189	88585979;88601542	MXE	ENSMUST00000190027.2	novel	1.00	10.0	0.0	0;20	0;0	n	1.00	8.5	0.0	2;15	0;0	y	0.70	7.0	3.0	0;14	3;3	n	1.00	14.5	0.0	3;26	0;0	y	0.97	14.0	0.5	2;26	0;1	y	0.91	5.0	0.5	0;10	1;0	n	1.00	10.0	0.0	3;17	0;0	y	0.81	6.5	1.5	0;13	1;2	n	1.00	9.0	0.0	0;18	0;0	n	1.00	14.0	0.0	0;28	0;0	n	1.00	9.0	0.0	0;18	0;0	n	1.00	11.5	0.0	1;22	0;0	n	ENSMUSG00000079427.11	Mthfsl	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase-like
novel_NIR_20767	chr9	88586189	88590894	-	88586189	88597541	A5SS	ENSMUST00000191235.2	novel	0.60	3	2	3	2	y	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.75	3	1	3	1	n	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.50	3	3	3	3	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.40	2	3	2	3	n	0.00	0	4	0	4	n	0.17	2	10	2	10	n	ENSMUSG00000079427.11	Mthfsl	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase-like
novel_NIR_20768	chr9	88586189	88590894	-	88586189	88601542	A5SS	ENSMUST00000190027.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	3	0	3	0	y	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000079427.11	Mthfsl	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase-like
novel_NIR_20769	chr9	88586189	88601712	-	88586189	88597541	A5SS&ES	ENSMUST00000191235.2	novel	0.33	1	2	1	2	n	0.00	0	6	0	6	n	0.37	7	12	7	12	y	0.83	5	1	5	1	y	0.45	5	6	5	6	y	0.45	5	6	5	6	y	0.00	0	3	0	3	n	0.12	1	7	1	7	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.43	3	4	3	4	y	0.09	1	10	1	10	n	ENSMUSG00000079427.11	Mthfsl	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase-like
novel_NIR_20770	chr9	88586189	88601712	-	88586189	88601542	5pMXE	ENSMUST00000190027.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.70	7	3	7	3	y	1.00	5	0	5	0	y	0.83	5	1	5	1	y	1.00	5	0	5	0	y	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	ENSMUSG00000079427.11	Mthfsl	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase-like
novel_NIR_20771	chr9	88586189;88590970	88590894;88597541	-	88586189	88597541	cassetteExon	ENSMUST00000191235.2	novel	0.43	1.5	2	3;0	2	n	0.29	2.5	6	0;5	6	n	0.11	1.5	12	0;3	12	n	0.71	2.5	1	3;2	1	y	0.20	1.5	6	1;2	6	n	0.00	0.0	6	0;0	6	n	0.45	2.5	3	3;2	3	y	0.12	1.0	7	0;2	7	n	-	-	-	-	-	-	0.50	3.0	3	2;4	3	y	0.20	1.0	4	0;2	4	n	0.23	3.0	10	2;4	10	y	ENSMUSG00000079427.11	Mthfsl	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase-like
novel_NIR_20772	chr9	88590970	88597541	-	88586189	88597541	A3SS	ENSMUST00000191235.2	novel	0.00	0	2	0	2	n	0.45	5	6	5	6	y	0.20	3	12	3	12	y	0.67	2	1	2	1	n	0.25	2	6	2	6	n	0.00	0	6	0	6	n	0.40	2	3	2	3	n	0.22	2	7	2	7	y	-	-	-	-	-	-	0.57	4	3	4	3	n	0.33	2	4	2	4	y	0.29	4	10	4	10	n	ENSMUSG00000079427.11	Mthfsl	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase-like
novel_NIR_20773	chr9	88597350	88597541	-	88586189	88597541	A3SS	ENSMUST00000191235.2	novel	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.67	2	1	2	1	y	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.12	1	7	1	7	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.20	1	4	1	4	n	0.00	0	10	0	10	n	ENSMUSG00000079427.11	Mthfsl	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase-like
novel_NIR_20774	chr9	88597802	88601542	-	88571038	88601542	A3SS	ENSMUST00000186721.2	novel	1.00	20	0	20	0	y	1.00	15	0	15	0	n	1.00	14	0	14	0	n	1.00	26	0	26	0	y	0.96	26	1	26	1	n	1.00	10	0	10	0	n	1.00	17	0	17	0	n	1.00	13	0	13	0	y	1.00	18	0	18	0	y	1.00	28	0	28	0	y	1.00	18	0	18	0	y	1.00	22	0	22	0	n	ENSMUSG00000079427.11	Mthfsl	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase-like
novel_NIR_20775	chr9	88597802	88601542	-	88586189	88601542	A3SS	ENSMUST00000190027.2	novel	1.00	20	0	20	0	y	1.00	15	0	15	0	n	0.82	14	3	14	3	n	1.00	26	0	26	0	n	0.96	26	1	26	1	n	1.00	10	0	10	0	y	1.00	17	0	17	0	n	0.87	13	2	13	2	y	1.00	18	0	18	0	y	1.00	28	0	28	0	n	1.00	18	0	18	0	y	1.00	22	0	22	0	n	ENSMUSG00000079427.11	Mthfsl	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase-like
novel_NIR_20776	chr9	88597802	88601542	-	88597802	88601712	A5SS	ENSMUST00000113110.5	novel	0.18	20	91	20	91	y	0.14	15	91	15	91	n	0.10	14	121	14	121	n	0.22	26	94	26	94	y	0.18	26	117	26	117	y	0.14	10	59	10	59	n	0.12	17	125	17	125	n	0.14	13	78	13	78	n	0.20	18	73	18	73	y	0.20	28	115	28	115	y	0.18	18	80	18	80	y	0.15	22	122	22	122	y	ENSMUSG00000079427.11	Mthfsl	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase-like
novel_NIR_20777	chr9	88597802	88601542	-	88597802	88602202	A5SS	ENSMUST00000191235.2	novel	0.95	20	1	20	1	y	1.00	15	0	15	0	y	0.93	14	1	14	1	y	1.00	26	0	26	0	y	1.00	26	0	26	0	y	1.00	10	0	10	0	y	1.00	17	0	17	0	y	1.00	13	0	13	0	y	1.00	18	0	18	0	y	1.00	28	0	28	0	y	1.00	18	0	18	0	y	1.00	22	0	22	0	y	ENSMUSG00000079427.11	Mthfsl	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase-like
novel_NIR_20778	chr9	88597802	88601542	-	88597802;88598616	88598547;88601542	ES	ENSMUST00000186863.7	novel	1.00	20	0.0	20	0;0	y	1.00	15	0.0	15	0;0	y	0.93	14	1.0	14	2;0	y	1.00	26	0.0	26	0;0	y	1.00	26	0.0	26	0;0	y	1.00	10	0.0	10	0;0	y	0.94	17	1.0	17	2;0	y	1.00	13	0.0	13	0;0	y	1.00	18	0.0	18	0;0	y	1.00	28	0.0	28	0;0	y	1.00	18	0.0	18	0;0	y	1.00	22	0.0	22	0;0	y	ENSMUSG00000079427.11	Mthfsl	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase-like
novel_NIR_20779	chr9	89093364	89121895	+	89093364;89097523	89097262;89121895	ES	ENSMUST00000085256.8	novel	0.08	5	56.5	5	68;45	n	0.18	12	55.0	12	64;46	y	0.11	5	42.5	5	49;36	n	0.18	18	79.5	18	101;58	y	0.16	16	82.0	16	79;85	y	0.25	8	23.5	8	30;17	y	0.22	20	72.5	20	69;76	y	0.00	0	38.0	0	53;23	n	0.12	8	56.0	8	52;60	n	0.16	16	85.5	16	91;80	y	0.26	29	81.0	29	96;66	y	0.23	26	87.0	26	102;72	y	ENSMUSG00000066442.18	Mthfs	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase
novel_NIR_20780	chr9	89093364	89121895	+	89093534	89121895	5pMXE	ENSMUST00000144930.2	novel	1.00	5	0	5	0	y	1.00	12	0	12	0	y	1.00	5	0	5	0	y	1.00	18	0	18	0	y	1.00	16	0	16	0	y	1.00	8	0	8	0	y	1.00	20	0	20	0	y	-	-	-	-	-	-	1.00	8	0	8	0	y	1.00	16	0	16	0	y	1.00	29	0	29	0	y	1.00	26	0	26	0	y	ENSMUSG00000066442.18	Mthfs	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase
novel_NIR_20781	chr9	89093364	89121895	+	89097523	89121895	5pMXE	ENSMUST00000127868.2	novel	0.10	5	45	5	45	n	0.21	12	46	12	46	y	0.12	5	36	5	36	n	0.24	18	58	18	58	y	0.16	16	85	16	85	y	0.32	8	17	8	17	y	0.21	20	76	20	76	y	0.00	0	23	0	23	n	0.12	8	60	8	60	n	0.17	16	80	16	80	y	0.31	29	66	29	66	y	0.27	26	72	26	72	y	ENSMUSG00000066442.18	Mthfs	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase
novel_NIR_20782	chr9	89093364	89121895	+	89100570	89121895	5pMXE	ENSMUST00000147644.2	novel	0.83	5	1	5	1	y	0.71	12	5	12	5	y	0.50	5	5	5	5	y	0.86	18	3	18	3	y	0.62	16	10	16	10	y	0.62	8	5	8	5	y	0.74	20	7	20	7	y	0.00	0	3	0	3	n	0.50	8	8	8	8	y	0.62	16	10	16	10	y	0.67	29	14	29	14	y	0.79	26	7	26	7	y	ENSMUSG00000066442.18	Mthfs	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase
novel_NIR_20783	chr9	89093364	89121895	+	89108440	89121895	A5SS&ES	ENSMUST00000127438.8	novel	0.38	5	8	5	8	y	1.00	12	0	12	0	y	0.45	5	6	5	6	y	1.00	18	0	18	0	y	0.84	16	3	16	3	y	0.67	8	4	8	4	y	0.87	20	3	20	3	y	0.00	0	7	0	7	n	0.73	8	3	8	3	y	0.80	16	4	16	4	y	0.94	29	2	29	2	y	0.90	26	3	26	3	y	ENSMUSG00000066442.18	Mthfs	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase
novel_NIR_20784	chr9	89093534	89097403	+	89093534	89094587	A3SS&ES	ENSMUST00000187362.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000066442.18	Mthfs	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase
novel_NIR_20785	chr9	89093534	89097403	+	89093534	89096465	A3SS&ES	ENSMUST00000117314.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000066442.18	Mthfs	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase
novel_NIR_20786	chr9	89093534	89097403	+	89093534	89108224	A3SS	ENSMUST00000149688.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000066442.18	Mthfs	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase
novel_NIR_20787	chr9	89093534	89097403	+	89093534	89121895	A3SS	ENSMUST00000144930.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000066442.18	Mthfs	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase
novel_NIR_20788	chr9	89095309	89097315	+	89095309	89097262	A3SS	ENSMUST00000187362.2	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	ENSMUSG00000066442.18	Mthfs	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase
novel_NIR_20789	chr9	89097523	89186037	+	89097523	89108224	3pMXE	ENSMUST00000118870.8	novel	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.33	1	2	1	2	n	ENSMUSG00000066442.18	Mthfs	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase
novel_NIR_20790	chr9	89100570	89108224	+	89093534	89108224	A5SS	ENSMUST00000149688.3	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000066442.18	Mthfs	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase
novel_NIR_20791	chr9	89100570	89108224	+	89097523	89108224	A5SS	ENSMUST00000127438.8	novel	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000066442.18	Mthfs	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase
novel_NIR_20792	chr9	89100570	89108224	+	89100570	89121895	A3SS	ENSMUST00000147644.2	novel	0.00	0	1	0	1	n	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.22	2	7	2	7	y	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	ENSMUSG00000066442.18	Mthfs	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase
novel_NIR_20793	chr9	89109631	89121895	+	89093534	89121895	A5SS	ENSMUST00000144930.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000066442.18	Mthfs	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase
novel_NIR_20794	chr9	89109631	89121895	+	89100570	89121895	A5SS	ENSMUST00000147644.2	novel	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.12	1	7	1	7	n	0.25	1	3	1	3	n	0.33	4	8	4	8	y	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	ENSMUSG00000066442.18	Mthfs	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase
novel_NIR_20795	chr9	89109631	89121895	+	89108440	89121895	A5SS	ENSMUST00000127438.8	novel	0.00	0	8	0	8	n	-	-	-	-	-	-	0.14	1	6	1	6	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.12	1	7	1	7	n	0.57	4	3	4	3	y	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000066442.18	Mthfs	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase
novel_NIR_20796	chr9	89117797	89121895	+	89093534	89121895	A5SS	ENSMUST00000144930.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000066442.18	Mthfs	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase
novel_NIR_20797	chr9	89117797	89121895	+	89100570	89121895	A5SS	ENSMUST00000147644.2	novel	0.00	0	1	0	1	n	0.29	2	5	2	5	y	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.17	1	5	1	5	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	ENSMUSG00000066442.18	Mthfs	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase
novel_NIR_20798	chr9	89117797	89121895	+	89108440	89121895	A5SS	ENSMUST00000127438.8	novel	0.00	0	8	0	8	n	1.00	2	0	2	0	y	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000066442.18	Mthfs	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase
novel_NIR_20799	chr9	89117797	89121895	+	89117797	89117924	3pMXE	ENSMUST00000149688.3	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000066442.18	Mthfs	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase
novel_NIR_20800	chr9	89117797	89121895	+	89117797	89117975	3pMXE	ENSMUST00000185894.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000066442.18	Mthfs	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase
novel_NIR_20801	chr9	89936687	89943555	+	89942563	89943555	5pMXE	ENSMUST00000187437.2	novel	0.00	0	6	0	6	n	0.33	1	2	1	2	n	0.50	2	2	2	2	y	0.15	2	11	2	11	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.08	1	12	1	12	n	0.30	3	7	3	7	y	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.14	1	6	1	6	n	0.08	1	12	1	12	n	ENSMUSG00000032359.15	Ctsh	chr9	protein_coding	cathepsin H
novel_NIR_20802	chr9	89942563	89943581	+	89942563	89943448	A3SS&ES	ENSMUST00000143172.8	novel	0.57	4	3	4	3	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	1.00	7	0	7	0	y	0.00	0	10	0	10	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.88	7	1	7	1	y	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	ENSMUSG00000032359.15	Ctsh	chr9	protein_coding	cathepsin H
novel_NIR_20803	chr9	89942563	89943581	+	89942563	89943555	A3SS	ENSMUST00000190338.7	novel	0.40	4	6	4	6	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.39	7	11	7	11	y	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.50	7	7	7	7	y	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	ENSMUSG00000032359.15	Ctsh	chr9	protein_coding	cathepsin H
novel_NIR_20804	chr9	89942563	89943581	+	89942563	89944770	A3SS	ENSMUST00000123320.8	novel	0.31	4	9	4	9	y	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.33	7	14	7	14	y	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.47	7	8	7	8	y	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	ENSMUSG00000032359.15	Ctsh	chr9	protein_coding	cathepsin H
novel_NIR_20805	chr9	89944417	89944770	+	89942563	89944770	A5SS	ENSMUST00000123320.8	novel	0.00	0	9	0	9	n	0.00	0	15	0	15	n	0.12	1	7	1	7	n	0.00	0	14	0	14	n	0.15	2	11	2	11	y	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	ENSMUSG00000032359.15	Ctsh	chr9	protein_coding	cathepsin H
novel_NIR_20806	chr9	89944417	89944770	+	89943529	89944770	A5SS	ENSMUST00000143172.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	ENSMUSG00000032359.15	Ctsh	chr9	protein_coding	cathepsin H
novel_NIR_20807	chr9	89992225	89995526	-	89992225	89996267	A5SS	ENSMUST00000188905.7	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.33	2	4	2	4	y	0.00	0	1	0	1	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000062270.15	Morf4l1	chr9	protein_coding	mortality factor 4 like 1
novel_NIR_20808	chr9	89992225	89995891	-	89992225	89996267	A5SS	ENSMUST00000188905.7	novel	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	ENSMUSG00000062270.15	Morf4l1	chr9	protein_coding	mortality factor 4 like 1
novel_NIR_20809	chr9	89992225	89996147	-	89992225	89996267	A5SS	ENSMUST00000188905.7	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.17	1	5	1	5	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.57	4	3	4	3	y	ENSMUSG00000062270.15	Morf4l1	chr9	protein_coding	mortality factor 4 like 1
novel_NIR_20810	chr9	90046117	90053527	+	90045367	90053527	A5SS	ENSMUST00000113059.8	novel	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.00	0	7	0	7	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	-	-	-	-	-	-	ENSMUSG00000032363.16	Adamts7	chr9	protein_coding	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7
novel_NIR_20811	chr9	90061525	90062754	+	90061525	90062678	A3SS	ENSMUST00000113059.8	novel	0.50	1	1	1	1	n	0.33	3	6	3	6	y	1.00	2	0	2	0	y	0.00	0	4	0	4	n	0.44	4	5	4	5	y	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.17	1	5	1	5	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	1.00	6	0	6	0	y	0.25	1	3	1	3	n	ENSMUSG00000032363.16	Adamts7	chr9	protein_coding	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7
novel_NIR_20812	chr9	90120513	90123063	-	90111154	90123063	A3SS	ENSMUST00000041767.14	novel	0.00	0	14	0	14	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.04	1	26	1	26	n	0.00	0	33	0	33	n	0.00	0	22	0	22	n	0.00	0	18	0	18	n	0.00	0	23	0	23	n	0.21	4	15	4	15	y	0.12	3	22	3	22	n	0.00	0	13	0	13	n	0.09	2	20	2	20	n	ENSMUSG00000037410.14	Tbc1d2b	chr9	protein_coding	TBC1 domain family, member 2B
novel_NIR_20813	chr9	90185900	90197582	+	90185900	90197578	A3SS	ENSMUST00000214503.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000111666.2	Gm30849	chr9	lncRNA	predicted gene, 30849
novel_NIR_20814	chr9	90197788	90267479	+	90197788	90199382	3pMXE	ENSMUST00000214503.2	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	5	0	5	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	ENSMUSG00000111666.2	Gm30849	chr9	lncRNA	predicted gene, 30849
novel_NIR_20815	chr9	90197788	90342416	+	90197788	90199382	3pMXE	ENSMUST00000214503.2	novel	0.20	1	4	1	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	7	0	7	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.56	5	4	5	4	y	0.17	1	5	1	5	n	0.00	0	3	0	3	n	ENSMUSG00000111666.2	Gm30849	chr9	lncRNA	predicted gene, 30849
novel_NIR_20816	chr9	9113802	9115691	-	9059160	9115691	A3SS	ENSMUST00000093893.12	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000050730.18	Arhgap42	chr9	protein_coding	Rho GTPase activating protein 42
novel_NIR_20817	chr9	92133771	92140101	+	92132477	92140101	A5SS	ENSMUST00000186364.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000032369.14	Plscr1	chr9	protein_coding	phospholipid scramblase 1
novel_NIR_20818	chr9	92158066	92163815	+	92158066	92163294	A3SS	ENSMUST00000126911.2	novel	-	-	-	-	-	-	0.60	3	2	3	2	y	-	-	-	-	-	-	0.00	0	7	0	7	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.20	1	4	1	4	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	ENSMUSG00000032372.15	Plscr2	chr9	protein_coding	phospholipid scramblase 2
novel_NIR_20819	chr9	92158189	92163294	+	92158066	92163294	A5SS	ENSMUST00000126911.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	15	0	15	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	ENSMUSG00000032372.15	Plscr2	chr9	protein_coding	phospholipid scramblase 2
novel_NIR_20820	chr9	92163403	92164165	+	92158071	92164165	A5SS	ENSMUST00000180154.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032372.15	Plscr2	chr9	protein_coding	phospholipid scramblase 2
novel_NIR_20821	chr9	92163403	92164165	+	92163836	92164165	A5SS	ENSMUST00000126911.2	novel	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.18	2	9	2	9	y	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000032372.15	Plscr2	chr9	protein_coding	phospholipid scramblase 2
novel_NIR_20822	chr9	95436680	95440477	+	95439578	95440477	5pMXE	ENSMUST00000217220.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000110827.2	Gm32281	chr9	lncRNA	predicted gene, 32281
novel_NIR_20823	chr9	95873340	95880269	+	95871059	95880269	A5SS	ENSMUST00000190665.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032410.14	Xrn1	chr9	protein_coding	5'-3' exoribonuclease 1
novel_NIR_20824	chr9	95873340	95880269	+	95873340;95877256	95877153;95880269	ES	ENSMUST00000034981.14	novel	-	-	-	-	-	-	0.00	0	2.0	0	3;1	n	0.10	1	9.0	1	12;6	n	0.00	0	8.0	0	7;9	n	0.00	0	9.0	0	9;9	n	0.00	0	6.5	0	6;7	n	0.00	0	4.5	0	3;6	n	0.00	0	6.5	0	4;9	n	0.00	0	2.0	0	3;1	n	0.27	2	5.5	2	7;4	y	0.00	0	3.0	0	2;4	n	0.00	0	6.0	0	4;8	n	ENSMUSG00000032410.14	Xrn1	chr9	protein_coding	5'-3' exoribonuclease 1
novel_NIR_20825	chr9	95885995	95888754	+	95885995;95888165	95888050;95888754	ES	ENSMUST00000034981.14	novel	0.00	0	2.5	0	1;4	n	0.00	0	1.0	0	1;1	n	0.00	0	7.5	0	3;12	n	0.00	0	4.5	0	6;3	n	0.25	3	9.0	3	10;8	y	0.00	0	7.0	0	5;9	n	0.00	0	8.0	0	5;11	n	0.18	1	4.5	1	2;7	n	0.00	0	9.0	0	7;11	n	0.00	0	4.5	0	5;4	n	0.00	0	2.5	0	3;2	n	0.00	0	4.0	0	3;5	n	ENSMUSG00000032410.14	Xrn1	chr9	protein_coding	5'-3' exoribonuclease 1
novel_NIR_20826	chr9	95930496	95933686	+	95930496	95933647	A3SS	ENSMUST00000034981.14	novel	0.33	2	4	2	4	y	-	-	-	-	-	-	0.20	2	8	2	8	y	0.00	0	8	0	8	n	0.33	3	6	3	6	y	0.00	0	1	0	1	n	0.43	6	8	6	8	y	0.38	3	5	3	5	y	0.67	2	1	2	1	y	0.00	0	13	0	13	n	-	-	-	-	-	-	0.30	3	7	3	7	y	ENSMUSG00000032410.14	Xrn1	chr9	protein_coding	5'-3' exoribonuclease 1
novel_NIR_20827	chr9	96113852	96114735	+	96084241	96114735	A5SS	ENSMUST00000188008.7	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000032411.16	Tfdp2	chr9	protein_coding	transcription factor Dp 2
novel_NIR_20828	chr9	96114801	96169654	+	96114801	96129103	3pMXE	ENSMUST00000190709.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.14	1	6	1	6	n	ENSMUSG00000032411.16	Tfdp2	chr9	protein_coding	transcription factor Dp 2
novel_NIR_20829	chr9	96114801	96169654	+	96141353	96169654	5pMXE	ENSMUST00000179065.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000032411.16	Tfdp2	chr9	protein_coding	transcription factor Dp 2
novel_NIR_20830	chr9	96129141	96131043	+	96129141	96155892	A3SS	ENSMUST00000185644.7	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.38	3	5	3	5	y	0.00	0	1	0	1	n	0.38	3	5	3	5	y	ENSMUSG00000032411.16	Tfdp2	chr9	protein_coding	transcription factor Dp 2
novel_NIR_20831	chr9	96462028	96462540	-	96459602	96462540	A3SS	ENSMUST00000034984.8	novel	0.00	0	1	0	1	n	1.00	3	0	3	0	y	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.25	2	6	2	6	y	0.00	0	2	0	2	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.29	2	5	2	5	y	0.00	0	1	0	1	n	0.25	1	3	1	3	n	ENSMUSG00000032413.13	Rasa2	chr9	protein_coding	RAS p21 protein activator 2
novel_NIR_20832	chr9	96571082	96578288	-	96571082	96600263	A5SS	ENSMUST00000152594.8	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	19	0	19	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.17	2	10	2	10	y	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	ENSMUSG00000040433.17	Zbtb38	chr9	protein_coding	zinc finger and BTB domain containing 38
novel_NIR_20833	chr9	96598776	96600263	-	96571082	96600263	A3SS	ENSMUST00000152594.8	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	19	0	19	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.27	3	8	3	8	y	ENSMUSG00000040433.17	Zbtb38	chr9	protein_coding	zinc finger and BTB domain containing 38
novel_NIR_20834	chr9	96721265	96721812	-	96721265	96722012	A5SS	ENSMUST00000112951.9	novel	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.08	1	11	1	11	n	0.06	1	15	1	15	n	0.00	0	12	0	12	n	ENSMUSG00000043587.16	Pxylp1	chr9	protein_coding	2-phosphoxylose phosphatase 1
novel_NIR_20835	chr9	96826757	96848603	-	96826757	96853981	A5SS	ENSMUST00000159298.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000046997.6	Spsb4	chr9	protein_coding	splA/ryanodine receptor domain and SOCS box containing 4
novel_NIR_20836	chr9	96826757	96848603	-	96826757	96866059	A5SS	ENSMUST00000162307.2	novel	0.00	0	1	0	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	4	4	4	4	y	0.80	4	1	4	1	y	0.00	0	7	0	7	n	0.00	0	6	0	6	n	ENSMUSG00000046997.6	Spsb4	chr9	protein_coding	splA/ryanodine receptor domain and SOCS box containing 4
novel_NIR_20837	chr9	96826757	96848603	-	96826757	96877628	A5SS	ENSMUST00000055433.5	novel	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	4	2	4	2	y	0.80	4	1	4	1	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000046997.6	Spsb4	chr9	protein_coding	splA/ryanodine receptor domain and SOCS box containing 4
novel_NIR_20838	chr9	97833288	97914914	-	97681523	97914914	A3SS	ENSMUST00000035027.13	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000032452.13	Clstn2	chr9	protein_coding	calsyntenin 2
novel_NIR_20839	chr9	98178785	98236072	+	98169629	98236072	A5SS	ENSMUST00000134253.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000032456.14	Nmnat3	chr9	protein_coding	nicotinamide nucleotide adenylyltransferase 3
novel_NIR_20840	chr9	98178785	98236072	+	98178785	98236075	A3SS	ENSMUST00000112938.8	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	0.60	3	2	3	2	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	1	0	1	n	ENSMUSG00000032456.14	Nmnat3	chr9	protein_coding	nicotinamide nucleotide adenylyltransferase 3
novel_NIR_20841	chr9	98178785	98236072	+	98179033	98236072	A5SS	ENSMUST00000112935.8	novel	0.10	1	9	1	9	n	0.00	0	6	0	6	n	0.27	3	8	3	8	y	0.00	0	7	0	7	n	0.05	1	18	1	18	n	0.08	1	11	1	11	n	0.10	1	9	1	9	n	0.20	1	4	1	4	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.15	2	11	2	11	y	0.00	0	6	0	6	n	ENSMUSG00000032456.14	Nmnat3	chr9	protein_coding	nicotinamide nucleotide adenylyltransferase 3
novel_NIR_20842	chr9	98179033	98193749	+	98179033	98236072	A3SS	ENSMUST00000112935.8	novel	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	18	0	18	n	0.00	0	11	0	11	n	0.18	2	9	2	9	y	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	ENSMUSG00000032456.14	Nmnat3	chr9	protein_coding	nicotinamide nucleotide adenylyltransferase 3
novel_NIR_20843	chr9	98179033	98193749	+	98179033	98281509	A3SS	ENSMUST00000112937.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000032456.14	Nmnat3	chr9	protein_coding	nicotinamide nucleotide adenylyltransferase 3
novel_NIR_20844	chr9	98179033	98236075	+	98178785	98236075	A5SS	ENSMUST00000112938.8	novel	0.86	6	1	6	1	y	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.67	2	1	2	1	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	6	0	6	0	y	1.00	3	0	3	0	y	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	ENSMUSG00000032456.14	Nmnat3	chr9	protein_coding	nicotinamide nucleotide adenylyltransferase 3
novel_NIR_20845	chr9	98179033	98236075	+	98179033	98236072	A3SS	ENSMUST00000112935.8	novel	0.40	6	9	6	9	y	0.14	1	6	1	6	n	0.11	1	8	1	8	n	0.22	2	7	2	7	y	0.18	4	18	4	18	y	0.08	1	11	1	11	n	0.40	6	9	6	9	y	0.43	3	4	3	4	y	0.12	1	7	1	7	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.14	1	6	1	6	n	ENSMUSG00000032456.14	Nmnat3	chr9	protein_coding	nicotinamide nucleotide adenylyltransferase 3
novel_NIR_20846	chr9	98179033;98236217	98236075;98285587	+	98179033;98281692	98281509;98285587	MXE	ENSMUST00000112937.3	novel	0.64	3.5	2.0	6;1	0;4	n	0.07	0.5	6.5	1;0	0;13	n	0.05	0.5	10.5	1;0	0;21	n	0.16	2.0	10.5	2;2	0;21	y	0.19	2.5	11.0	4;1	0;22	n	0.14	1.0	6.0	1;1	0;12	n	0.32	3.5	7.5	6;1	0;15	n	0.28	3.5	9.0	3;4	0;18	y	0.36	2.5	4.5	1;4	0;9	n	0.00	0.0	10.0	0;0	0;20	n	0.05	0.5	10.5	0;1	0;21	n	0.12	1.0	7.0	1;1	0;14	n	ENSMUSG00000032456.14	Nmnat3	chr9	protein_coding	nicotinamide nucleotide adenylyltransferase 3
novel_NIR_20847	chr9	98236217	98285587	+	98236217	98249423	3pMXE	ENSMUST00000129771.3	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000032456.14	Nmnat3	chr9	protein_coding	nicotinamide nucleotide adenylyltransferase 3
novel_NIR_20848	chr9	98236217	98285587	+	98236217	98281509	3pMXE	ENSMUST00000134253.8	novel	0.17	1	5	1	5	n	0.00	0	15	0	15	n	0.00	0	16	0	16	n	0.10	2	19	2	19	n	0.04	1	23	1	23	n	0.07	1	13	1	13	n	0.06	1	16	1	16	n	0.25	4	12	4	12	y	0.36	4	7	4	7	y	0.00	0	23	0	23	n	0.08	1	11	1	11	n	0.07	1	13	1	13	n	ENSMUSG00000032456.14	Nmnat3	chr9	protein_coding	nicotinamide nucleotide adenylyltransferase 3
novel_NIR_20849	chr9	98236217	98285587	+	98236217;98281692	98281509;98285587	ES	ENSMUST00000112935.8	novel	0.18	1	4.5	1	5;4	n	0.00	0	14.0	0	15;13	n	0.00	0	18.5	0	16;21	n	0.09	2	20.0	2	19;21	n	0.04	1	22.5	1	23;22	n	0.07	1	12.5	1	13;12	n	0.06	1	15.5	1	16;15	n	0.21	4	15.0	4	12;18	y	0.33	4	8.0	4	7;9	y	0.00	0	21.5	0	23;20	n	0.06	1	16.0	1	11;21	n	0.07	1	13.5	1	13;14	n	ENSMUSG00000032456.14	Nmnat3	chr9	protein_coding	nicotinamide nucleotide adenylyltransferase 3
novel_NIR_20850	chr9	98290028	98292130	+	98285666	98292130	A5SS	ENSMUST00000112935.8	novel	0.00	0	11	0	11	n	0.17	2	10	2	10	y	0.11	3	25	3	25	n	0.06	1	15	1	15	n	0.00	0	18	0	18	n	0.00	0	4	0	4	n	0.10	2	19	2	19	n	0.00	0	25	0	25	n	0.11	2	16	2	16	n	0.00	0	28	0	28	n	0.00	0	22	0	22	n	0.00	0	21	0	21	n	ENSMUSG00000032456.14	Nmnat3	chr9	protein_coding	nicotinamide nucleotide adenylyltransferase 3
novel_NIR_20851	chr9	98975037	98976493	-	98975275	98976493	A3SS&ES	ENSMUST00000035037.14	novel	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	17	0	17	n	0.00	0	15	0	15	n	0.00	0	28	0	28	n	0.00	0	5	0	5	n	0.17	2	10	2	10	y	0.00	0	9	0	9	n	0.00	0	10	0	10	n	0.00	0	27	0	27	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	ENSMUSG00000032462.15	Pik3cb	chr9	protein_coding	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta
novel_NIR_20852	chr9	98983453	98983709	-	98983453	98987584	A5SS	ENSMUST00000035037.14	novel	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	13	0	13	n	0.00	0	13	0	13	n	0.00	0	16	0	16	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.13	2	13	2	13	n	0.25	2	6	2	6	y	0.20	4	16	4	16	y	0.00	0	6	0	6	n	0.00	0	11	0	11	n	ENSMUSG00000032462.15	Pik3cb	chr9	protein_coding	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta
novel_NIR_20853	chr9	98983904	98987584	-	98983453	98987584	A3SS	ENSMUST00000035037.14	novel	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.07	1	13	1	13	n	0.00	0	13	0	13	n	0.00	0	16	0	16	n	0.00	0	3	0	3	n	0.29	2	5	2	5	y	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	ENSMUSG00000032462.15	Pik3cb	chr9	protein_coding	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta
novel_NIR_20854	chr9	99160210	99163081	+	99160251	99163081	A5SS	ENSMUST00000093795.10	novel	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.60	3	2	3	2	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000056267.15	Cep70	chr9	protein_coding	centrosomal protein 70
novel_NIR_20855	chrX	10025119	10027014	-	10025119	10028841	A5SS	ENSMUST00000115534.8	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	ENSMUSG00000031174.18	Rpgr	chrX	protein_coding	retinitis pigmentosa GTPase regulator
novel_NIR_20856	chrX	10025119	10030961	-	10025119;10028929	10028841;10030961	ES	ENSMUST00000115534.8	novel	0.00	0	2.0	0	3;1	n	0.33	1	2.0	1	2;2	n	0.29	1	2.5	1	2;3	n	0.80	2	0.5	2	0;1	y	0.80	2	0.5	2	1;0	y	0.00	0	2.5	0	3;2	n	0.29	1	2.5	1	3;2	n	0.00	0	2.5	0	0;5	n	0.00	0	7.0	0	3;11	n	0.29	1	2.5	1	2;3	n	0.00	0	4.0	0	5;3	n	0.00	0	3.5	0	4;3	n	ENSMUSG00000031174.18	Rpgr	chrX	protein_coding	retinitis pigmentosa GTPase regulator
novel_NIR_20857	chrX	10025119	10030961	-	10028929	10030961	A3SS&ES	ENSMUST00000115533.8	novel	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.25	1	3	1	3	n	0.67	2	1	2	1	y	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000031174.18	Rpgr	chrX	protein_coding	retinitis pigmentosa GTPase regulator
novel_NIR_20858	chrX	10025119	10030961	-	9940067	10030961	A3SS	ENSMUST00000072393.9	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031174.18	Rpgr	chrX	protein_coding	retinitis pigmentosa GTPase regulator
novel_NIR_20859	chrX	100257280	100257380	-	100146041	100257380	A3SS	ENSMUST00000156473.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.67	2	1	2	1	y	ENSMUSG00000046032.17	Snx12	chrX	protein_coding	sorting nexin 12
novel_NIR_20860	chrX	100257280	100257380	-	100255952	100257380	A3SS	ENSMUST00000077876.4	novel	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.00	0	23	0	23	n	0.12	1	7	1	7	n	0.00	0	20	0	20	n	0.00	0	11	0	11	n	0.18	2	9	2	9	y	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	23	0	23	n	0.20	2	8	2	8	y	0.13	2	13	2	13	n	ENSMUSG00000046032.17	Snx12	chrX	protein_coding	sorting nexin 12
novel_NIR_20861	chrX	100263598	100265868	-	100259184	100265868	A3SS	ENSMUST00000156473.8	novel	0.25	2	6	2	6	y	0.00	0	15	0	15	n	0.03	1	28	1	28	n	0.05	1	21	1	21	n	0.10	3	28	3	28	n	0.00	0	17	0	17	n	0.04	1	27	1	27	n	0.00	0	16	0	16	n	0.09	1	10	1	10	n	0.06	1	17	1	17	n	0.00	0	10	0	10	n	0.09	2	21	2	21	n	ENSMUSG00000046032.17	Snx12	chrX	protein_coding	sorting nexin 12
novel_NIR_20862	chrX	100298597	100298759	+	100298597	100298763	A3SS	ENSMUST00000138437.3	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	ENSMUSG00000042903.9	Foxo4	chrX	protein_coding	forkhead box O4
novel_NIR_20863	chrX	100337227	100337402	+	100337227	100337399	A3SS	ENSMUST00000087956.6	novel	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.36	5	9	5	9	y	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.07	1	13	1	13	n	0.00	0	12	0	12	n	ENSMUSG00000079487.12	Med12	chrX	protein_coding	mediator complex subunit 12
novel_NIR_20864	chrX	100420946	100427758	+	100420018	100427758	A5SS	ENSMUST00000119080.8	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	7	0	7	0	y	0.67	4	2	4	2	y	0.88	7	1	7	1	y	0.00	0	1	0	1	n	1.00	8	0	8	0	y	0.81	13	3	13	3	y	1.00	9	0	9	0	y	ENSMUSG00000047797.15	Gjb1	chrX	protein_coding	gap junction protein, beta 1
novel_NIR_20865	chrX	100420946	100427758	+	100427448	100427758	5pMXE	ENSMUST00000119190.2	novel	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.11	1	8	1	8	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	1.00	7	0	7	0	y	0.21	4	15	4	15	y	0.54	7	6	7	6	y	0.00	0	13	0	13	n	0.29	8	20	8	20	y	0.68	13	6	13	6	y	0.50	9	9	9	9	y	ENSMUSG00000047797.15	Gjb1	chrX	protein_coding	gap junction protein, beta 1
novel_NIR_20866	chrX	100421101	100427758	+	100420018	100427758	A5SS	ENSMUST00000119080.8	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000047797.15	Gjb1	chrX	protein_coding	gap junction protein, beta 1
novel_NIR_20867	chrX	100423769	100427758	+	100420018	100427758	A5SS	ENSMUST00000119080.8	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.75	9	3	9	3	y	-	-	-	-	-	-	ENSMUSG00000047797.15	Gjb1	chrX	protein_coding	gap junction protein, beta 1
novel_NIR_20868	chrX	100423769	100427758	+	100427448	100427758	5pMXE	ENSMUST00000119190.2	novel	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.00	0	20	0	20	n	0.60	9	6	9	6	y	0.00	0	9	0	9	n	ENSMUSG00000047797.15	Gjb1	chrX	protein_coding	gap junction protein, beta 1
novel_NIR_20869	chrX	100423962	100427758	+	100420018	100427758	A5SS	ENSMUST00000119080.8	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.82	9	2	9	2	y	-	-	-	-	-	-	0.50	2	2	2	2	y	0.80	4	1	4	1	y	0.83	5	1	5	1	y	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	ENSMUSG00000047797.15	Gjb1	chrX	protein_coding	gap junction protein, beta 1
novel_NIR_20870	chrX	100423962	100427758	+	100427448	100427758	5pMXE	ENSMUST00000119190.2	novel	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.64	9	5	9	5	y	-	-	-	-	-	-	0.12	2	15	2	15	n	0.40	4	6	4	6	y	0.28	5	13	5	13	y	0.00	0	20	0	20	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	ENSMUSG00000047797.15	Gjb1	chrX	protein_coding	gap junction protein, beta 1
novel_NIR_20871	chrX	100426796	100427758	+	100420018	100427758	A5SS	ENSMUST00000119080.8	novel	0.78	7	2	7	2	y	0.60	3	2	3	2	y	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	5	0	5	0	y	ENSMUSG00000047797.15	Gjb1	chrX	protein_coding	gap junction protein, beta 1
novel_NIR_20872	chrX	100426796	100427758	+	100427448	100427758	5pMXE	ENSMUST00000119190.2	novel	0.54	7	6	7	6	y	0.33	3	6	3	6	y	0.00	0	8	0	8	n	0.17	2	10	2	10	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	13	0	13	n	0.00	0	20	0	20	n	0.00	0	6	0	6	n	0.36	5	9	5	9	y	ENSMUSG00000047797.15	Gjb1	chrX	protein_coding	gap junction protein, beta 1
novel_NIR_20873	chrX	100427172	100427758	+	100420018	100427758	A5SS	ENSMUST00000119080.8	novel	0.87	13	2	13	2	y	0.88	14	2	14	2	y	1.00	3	0	3	0	y	0.86	12	2	12	2	y	0.93	25	2	25	2	y	1.00	3	0	3	0	y	0.86	12	2	12	2	y	0.50	1	1	1	1	n	0.91	10	1	10	1	y	1.00	7	0	7	0	y	0.82	14	3	14	3	y	1.00	7	0	7	0	y	ENSMUSG00000047797.15	Gjb1	chrX	protein_coding	gap junction protein, beta 1
novel_NIR_20874	chrX	100427172	100427758	+	100427448	100427758	5pMXE	ENSMUST00000119190.2	novel	0.68	13	6	13	6	y	0.70	14	6	14	6	y	0.27	3	8	3	8	y	0.55	12	10	12	10	y	0.83	25	5	25	5	y	1.00	3	0	3	0	y	0.44	12	15	12	15	y	0.14	1	6	1	6	n	0.43	10	13	10	13	y	0.26	7	20	7	20	y	0.70	14	6	14	6	y	0.44	7	9	7	9	y	ENSMUSG00000047797.15	Gjb1	chrX	protein_coding	gap junction protein, beta 1
novel_NIR_20875	chrX	10048291	10060186	-	10048291	10061057	A5SS	ENSMUST00000072393.9	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.29	2	5	2	5	y	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	ENSMUSG00000031174.18	Rpgr	chrX	protein_coding	retinitis pigmentosa GTPase regulator
novel_NIR_20876	chrX	100596431	100596772	+	100596437	100596772	A5SS	ENSMUST00000118878.8	novel	0.20	2	8	2	8	y	0.00	0	2	0	2	n	0.00	0	19	0	19	n	0.00	0	9	0	9	n	0.06	1	16	1	16	n	0.00	0	10	0	10	n	0.11	1	8	1	8	n	0.14	1	6	1	6	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	14	0	14	n	ENSMUSG00000031314.19	Taf1	chrX	protein_coding	TATA-box binding protein associated factor 1
novel_NIR_20877	chrX	100603550	100605683	+	100603550	100604540	A3SS&ES	ENSMUST00000101341.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031314.19	Taf1	chrX	protein_coding	TATA-box binding protein associated factor 1
novel_NIR_20878	chrX	100683928	100686618	+	100683928	100686612	A3SS	ENSMUST00000119299.8	novel	0.00	0	22	0	22	n	0.00	0	8	0	8	n	0.00	0	15	0	15	n	0.00	0	25	0	25	n	0.00	0	26	0	26	n	0.00	0	8	0	8	n	0.23	3	10	3	10	y	0.00	0	17	0	17	n	0.00	0	20	0	20	n	0.00	0	17	0	17	n	0.00	0	15	0	15	n	0.00	0	28	0	28	n	ENSMUSG00000034160.14	Ogt	chrX	protein_coding	O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)
novel_NIR_20879	chrX	10079893	10082460	-	10079893	10081464	A5SS&ES	ENSMUST00000143532.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031174.18	Rpgr	chrX	protein_coding	retinitis pigmentosa GTPase regulator
novel_NIR_20880	chrX	10079893	10082460	-	10079893	10082455	A5SS	ENSMUST00000115534.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031174.18	Rpgr	chrX	protein_coding	retinitis pigmentosa GTPase regulator
novel_NIR_20881	chrX	10079893	10082460	-	10079893	10082791	A5SS	ENSMUST00000072393.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000031174.18	Rpgr	chrX	protein_coding	retinitis pigmentosa GTPase regulator
novel_NIR_20882	chrX	101162904	101165274	+	101163336	101165274	5pMXE	ENSMUST00000144367.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	ENSMUSG00000079480.4	Pin4	chrX	protein_coding	protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)
novel_NIR_20883	chrX	101401902	101446191	-	101351350	101446191	A3SS	ENSMUST00000087916.11	novel	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.05	1	18	1	18	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.17	2	10	2	10	y	0.00	0	16	0	16	n	0.14	1	6	1	6	n	0.00	0	16	0	16	n	0.00	0	18	0	18	n	0.00	0	7	0	7	n	ENSMUSG00000067567.13	Hdac8	chrX	protein_coding	histone deacetylase 8
novel_NIR_20884	chrX	101436252	101446191	-	101351350	101446191	A3SS	ENSMUST00000087916.11	novel	0.35	7	13	7	13	y	0.00	0	14	0	14	n	0.13	2	13	2	13	n	0.14	3	18	3	18	n	0.23	3	10	3	10	y	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.06	1	16	1	16	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.00	0	18	0	18	n	0.30	3	7	3	7	y	ENSMUSG00000067567.13	Hdac8	chrX	protein_coding	histone deacetylase 8
novel_NIR_20885	chrX	101685985	101687642	-	101685985	101687453	A5SS	ENSMUST00000052012.14	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.15	2	11	2	11	y	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	ENSMUSG00000034055.17	Phka1	chrX	protein_coding	phosphorylase kinase alpha 1
novel_NIR_20886	chrX	102537306	102546466	+	102537306	102550971	A3SS	ENSMUST00000234690.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000097571.10	Jpx	chrX	lncRNA	Jpx transcript, Xist activator (non-protein coding)
novel_NIR_20887	chrX	102537306	102546466	+	102537306;102540136	102540044;102546466	ES	ENSMUST00000181020.9	novel	0.00	0	7.0	0	9;5	n	0.00	0	8.5	0	14;3	n	0.21	2	7.5	2	12;3	y	0.13	1	6.5	1	8;5	n	0.00	0	12.5	0	17;8	n	0.00	0	11.0	0	5;17	n	0.00	0	12.0	0	17;7	n	0.00	0	7.5	0	11;4	n	0.00	0	14.5	0	23;6	n	0.08	1	11.0	1	18;4	n	0.12	1	7.0	1	10;4	n	0.00	0	7.0	0	13;1	n	ENSMUSG00000097571.10	Jpx	chrX	lncRNA	Jpx transcript, Xist activator (non-protein coding)
novel_NIR_20888	chrX	102537306	102546466	+	102544928	102546466	5pMXE	ENSMUST00000235019.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000097571.10	Jpx	chrX	lncRNA	Jpx transcript, Xist activator (non-protein coding)
novel_NIR_20889	chrX	102540136	102561917	+	102540136	102546466	3pMXE	ENSMUST00000181020.9	novel	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.27	3	8	3	8	y	0.00	0	17	0	17	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	ENSMUSG00000097571.10	Jpx	chrX	lncRNA	Jpx transcript, Xist activator (non-protein coding)
novel_NIR_20890	chrX	102540136	102561917	+	102540136	102568473	A3SS	ENSMUST00000234173.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000097571.10	Jpx	chrX	lncRNA	Jpx transcript, Xist activator (non-protein coding)
novel_NIR_20891	chrX	102540136	102561917	+	102540136;102546798	102546466;102561917	ES	ENSMUST00000234244.2	novel	0.00	0	2.5	0	5;0	n	0.40	1	1.5	1	3;0	n	0.00	0	1.5	0	3;0	n	0.00	0	2.5	0	5;0	n	0.43	3	4.0	3	8;0	y	0.00	0	8.5	0	17;0	n	0.00	0	3.5	0	7;0	n	0.00	0	2.0	0	4;0	n	0.00	0	3.0	0	6;0	n	0.00	0	2.0	0	4;0	n	0.00	0	2.0	0	4;0	n	0.00	0	0.5	0	1;0	n	ENSMUSG00000097571.10	Jpx	chrX	lncRNA	Jpx transcript, Xist activator (non-protein coding)
novel_NIR_20892	chrX	102551662	102552876	+	102546536	102552876	A5SS	ENSMUST00000235041.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000097571.10	Jpx	chrX	lncRNA	Jpx transcript, Xist activator (non-protein coding)
novel_NIR_20893	chrX	102571021	102573251	+	102568602	102573251	A5SS	ENSMUST00000234244.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000097571.10	Jpx	chrX	lncRNA	Jpx transcript, Xist activator (non-protein coding)
novel_NIR_20894	chrX	102571021	102573251	+	102571528	102573251	A5SS&ES	ENSMUST00000234815.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000097571.10	Jpx	chrX	lncRNA	Jpx transcript, Xist activator (non-protein coding)
novel_NIR_20895	chrX	102755909	102775531	-	102755909	102777744	A5SS	ENSMUST00000148684.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000033965.11	Slc16a2	chrX	protein_coding	solute carrier family 16 (monocarboxylic acid transporters), member 2
novel_NIR_20896	chrX	103010286;103022201	103022110;103022879	-	103010286	103022879	cassetteExon	ENSMUST00000121153.8	novel	0.20	0.5	2	1;0	2	n	0.05	0.5	9	1;0	9	n	0.20	2.0	8	2;2	8	y	0.03	0.5	15	1;0	15	n	0.07	0.5	7	1;0	7	n	0.00	0.0	8	0;0	8	n	0.00	0.0	10	0;0	10	n	0.20	1.5	6	2;1	6	n	0.14	1.0	6	0;2	6	n	0.18	2.0	9	1;3	9	n	0.00	0.0	4	0;0	4	n	0.00	0.0	8	0;0	8	n	ENSMUSG00000056537.12	Rlim	chrX	protein_coding	ring finger protein, LIM domain interacting
novel_NIR_20897	chrX	103022201	103022879	-	103010286	103022879	A3SS	ENSMUST00000121153.8	novel	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.20	2	8	2	8	n	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.14	1	6	1	6	n	0.25	2	6	2	6	y	0.25	3	9	3	9	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	ENSMUSG00000056537.12	Rlim	chrX	protein_coding	ring finger protein, LIM domain interacting
novel_NIR_20898	chrX	104083418	104087608	-	104083418	104091515	A5SS	ENSMUST00000127533.8	novel	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	2	2	2	2	y	1.00	2	0	2	0	y	0.50	1	1	1	1	n	ENSMUSG00000087174.8	5530601H04Rik	chrX	lncRNA	RIKEN cDNA 5530601H04 gene
novel_NIR_20899	chrX	104083418	104087608	-	104083418;104086910	104086731;104087608	ES	ENSMUST00000156974.8	novel	1.00	2	0.0	2	0;0	y	0.80	2	0.5	2	0;1	y	-	-	-	-	-	-	0.33	1	2.0	1	0;4	n	0.00	0	2.0	0	0;4	n	1.00	1	0.0	1	0;0	n	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.80	2	0.5	2	0;1	y	1.00	2	0.0	2	0;0	y	1.00	1	0.0	1	0;0	n	ENSMUSG00000087174.8	5530601H04Rik	chrX	lncRNA	RIKEN cDNA 5530601H04 gene
novel_NIR_20900	chrX	104083418	104087608	-	104086910	104087608	3pMXE	ENSMUST00000147478.8	novel	1.00	2	0	2	0	y	0.67	2	1	2	1	y	-	-	-	-	-	-	0.20	1	4	1	4	n	0.00	0	4	0	4	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000087174.8	5530601H04Rik	chrX	lncRNA	RIKEN cDNA 5530601H04 gene
novel_NIR_20901	chrX	104083418	104110365	-	104083418;104091616	104091515;104110365	ES	ENSMUST00000127533.8	novel	0.00	0	7.5	0	0;15	n	0.00	0	5.0	0	0;10	n	0.00	0	2.5	0	0;5	n	0.17	2	10.0	2	0;20	y	0.00	0	7.0	0	0;14	n	0.00	0	3.0	0	0;6	n	0.00	0	6.0	0	0;12	n	0.00	0	1.0	0	0;2	n	0.00	0	2.0	0	1;3	n	0.00	0	8.0	0	2;14	n	0.15	1	5.5	1	0;11	n	0.00	0	5.5	0	1;10	n	ENSMUSG00000087174.8	5530601H04Rik	chrX	lncRNA	RIKEN cDNA 5530601H04 gene
novel_NIR_20902	chrX	104083418	104110365	-	104087717	104110365	3pMXE	ENSMUST00000138460.8	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	ENSMUSG00000087174.8	5530601H04Rik	chrX	lncRNA	RIKEN cDNA 5530601H04 gene
novel_NIR_20903	chrX	104083418	104110365	-	104106734	104110365	3pMXE	ENSMUST00000123850.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000087174.8	5530601H04Rik	chrX	lncRNA	RIKEN cDNA 5530601H04 gene
novel_NIR_20904	chrX	104092087	104110365	-	104087717	104110365	A3SS	ENSMUST00000156974.8	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000087174.8	5530601H04Rik	chrX	lncRNA	RIKEN cDNA 5530601H04 gene
novel_NIR_20905	chrX	104092087	104110365	-	104106734	104110365	3pMXE	ENSMUST00000123850.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000087174.8	5530601H04Rik	chrX	lncRNA	RIKEN cDNA 5530601H04 gene
novel_NIR_20906	chrX	104126411	104129726	+	104126411	104159920	A3SS	ENSMUST00000119477.2	novel	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.10	1	9	1	9	n	0.00	0	17	0	17	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.22	2	7	2	7	y	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	ENSMUSG00000031226.14	Pbdc1	chrX	protein_coding	polysaccharide biosynthesis domain containing 1
novel_NIR_20907	chrX	104126411	104160433	+	104126411	104126622	3pMXE	ENSMUST00000033577.11	novel	0.44	27	34	27	34	y	0.46	23	27	23	27	y	0.43	44	58	44	58	y	0.41	17	24	17	24	y	0.47	33	37	33	37	y	0.61	35	22	35	22	y	0.47	36	41	36	41	y	0.38	14	23	14	23	y	0.36	15	27	15	27	y	0.49	28	29	28	29	y	0.51	29	28	29	28	y	0.66	40	21	40	21	y	ENSMUSG00000031226.14	Pbdc1	chrX	protein_coding	polysaccharide biosynthesis domain containing 1
novel_NIR_20908	chrX	104126411	104160433	+	104126411	104159920	A3SS	ENSMUST00000119477.2	novel	0.79	27	7	27	7	y	0.66	23	12	23	12	y	0.73	44	16	44	16	y	0.65	17	9	17	9	y	0.66	33	17	33	17	y	0.71	35	14	35	14	y	0.82	36	8	36	8	y	0.61	14	9	14	9	y	0.68	15	7	15	7	y	0.76	28	9	28	9	y	0.78	29	8	29	8	y	0.89	40	5	40	5	y	ENSMUSG00000031226.14	Pbdc1	chrX	protein_coding	polysaccharide biosynthesis domain containing 1
novel_NIR_20909	chrX	104126411;104148894	104148710;104159920	+	104126411	104159920	cassetteExon	ENSMUST00000119477.2	novel	0.00	0.0	7	0;0	7	n	0.00	0.0	12	0;0	12	n	0.00	0.0	16	0;0	16	n	0.05	0.5	9	1;0	9	n	0.00	0.0	17	0;0	17	n	0.10	1.5	14	2;1	14	n	0.06	0.5	8	1;0	8	n	0.10	1.0	9	1;1	9	n	0.07	0.5	7	0;1	7	n	0.18	2.0	9	2;2	9	y	0.00	0.0	8	0;0	8	n	0.09	0.5	5	0;1	5	n	ENSMUSG00000031226.14	Pbdc1	chrX	protein_coding	polysaccharide biosynthesis domain containing 1
novel_NIR_20910	chrX	105014595	105015042	-	105014632	105015042	A3SS	ENSMUST00000033583.14	novel	0.33	2	4	2	4	y	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.12	1	7	1	7	n	0.08	2	22	2	22	n	0.25	2	6	2	6	y	0.22	2	7	2	7	y	0.09	1	10	1	10	n	-	-	-	-	-	-	0.00	0	11	0	11	n	0.20	2	8	2	8	y	0.00	0	11	0	11	n	ENSMUSG00000031232.18	Magt1	chrX	protein_coding	magnesium transporter 1
novel_NIR_20911	chrX	105059476	105061204	+	105059476	105059711	3pMXE	ENSMUST00000152398.2	novel	1.00	5	0	5	0	y	-	-	-	-	-	-	0.00	0	10	0	10	n	0.50	1	1	1	1	n	1.00	2	0	2	0	y	0.00	0	5	0	5	n	0.33	2	4	2	4	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.38	3	5	3	5	y	0.00	0	5	0	5	n	-	-	-	-	-	-	ENSMUSG00000031231.5	Cox7b	chrX	protein_coding	cytochrome c oxidase subunit 7B
novel_NIR_20912	chrX	105059476	105063192	+	105059476	105059711	3pMXE	ENSMUST00000152398.2	novel	1.00	8	0	8	0	y	1.00	12	0	12	0	y	0.00	0	10	0	10	n	0.00	0	1	0	1	n	1.00	8	0	8	0	y	0.00	0	5	0	5	n	0.67	8	4	8	4	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.44	4	5	4	5	y	-	-	-	-	-	-	ENSMUSG00000031231.5	Cox7b	chrX	protein_coding	cytochrome c oxidase subunit 7B
novel_NIR_20913	chrX	10581306	10584223	+	10581306	10582637	3pMXE	ENSMUST00000125623.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000008035.13	Mid1ip1	chrX	protein_coding	Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))
novel_NIR_20914	chrX	10581306	10584223	+	10581306	10584226	A3SS	ENSMUST00000144356.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.33	1	2	1	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000008035.13	Mid1ip1	chrX	protein_coding	Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))
novel_NIR_20915	chrX	107787376	107793837	-	107787376;107793047	107792889;107793837	ES	ENSMUST00000150434.8	novel	0.00	0	8.0	0	10;6	n	0.00	0	3.0	0	3;3	n	0.31	8	17.5	8	18;17	y	0.29	3	7.5	3	7;8	y	0.18	3	13.5	3	14;13	y	0.00	0	7.5	0	10;5	n	0.10	1	9.5	1	14;5	n	0.00	0	8.5	0	8;9	n	0.38	4	6.5	4	9;4	y	0.00	0	6.5	0	7;6	n	0.00	0	4.0	0	3;5	n	0.00	0	5.0	0	5;5	n	ENSMUSG00000063663.12	Brwd3	chrX	protein_coding	bromodomain and WD repeat domain containing 3
novel_NIR_20916	chrX	107796576	107799022	-	107796576;107797917	107797846;107799022	ES	ENSMUST00000150434.8	novel	0.00	0	4.0	0	2;6	n	0.00	0	7.5	0	10;5	n	0.21	3	11.5	3	12;11	y	0.00	0	8.0	0	6;10	n	0.00	0	17.5	0	18;17	n	0.11	1	8.5	1	9;8	n	0.00	0	6.5	0	8;5	n	0.00	0	6.0	0	4;8	n	0.00	0	3.0	0	2;4	n	0.00	0	8.0	0	8;8	n	0.00	0	3.0	0	2;4	n	0.36	2	3.5	2	3;4	y	ENSMUSG00000063663.12	Brwd3	chrX	protein_coding	bromodomain and WD repeat domain containing 3
novel_NIR_20917	chrX	107878267	107879872	+	107877561	107879872	A5SS	ENSMUST00000207966.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000086629.9	2810403D21Rik	chrX	lncRNA	RIKEN cDNA 2810403D21 gene
novel_NIR_20918	chrX	107878267	107879872	+	107878291	107879872	A5SS	ENSMUST00000153212.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000086629.9	2810403D21Rik	chrX	lncRNA	RIKEN cDNA 2810403D21 gene
novel_NIR_20919	chrX	107878267	107879872	+	107878379	107879872	A5SS	ENSMUST00000131640.8	novel	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.17	2	10	2	10	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	ENSMUSG00000086629.9	2810403D21Rik	chrX	lncRNA	RIKEN cDNA 2810403D21 gene
novel_NIR_20920	chrX	107878267	107879872	+	107878610	107879872	5pMXE	ENSMUST00000151166.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	ENSMUSG00000086629.9	2810403D21Rik	chrX	lncRNA	RIKEN cDNA 2810403D21 gene
novel_NIR_20921	chrX	107879961	107927875	+	107879961	107899486	A3SS&ES	ENSMUST00000153212.8	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.38	3	5	3	5	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.25	1	3	1	3	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	5	0	5	n	ENSMUSG00000086629.9	2810403D21Rik	chrX	lncRNA	RIKEN cDNA 2810403D21 gene
novel_NIR_20922	chrX	107879961	107927875	+	107879961	107915078	A3SS&ES	ENSMUST00000144421.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.33	3	6	3	6	y	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.50	1	1	1	1	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	ENSMUSG00000086629.9	2810403D21Rik	chrX	lncRNA	RIKEN cDNA 2810403D21 gene
novel_NIR_20923	chrX	107879961	107927875	+	107879961	107917874	3pMXE	ENSMUST00000151166.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000086629.9	2810403D21Rik	chrX	lncRNA	RIKEN cDNA 2810403D21 gene
novel_NIR_20924	chrX	107879961	107927875	+	107879961	107929951	A3SS	ENSMUST00000131640.8	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.38	3	5	3	5	y	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.50	1	1	1	1	n	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000086629.9	2810403D21Rik	chrX	lncRNA	RIKEN cDNA 2810403D21 gene
novel_NIR_20925	chrX	107879961	107927875	+	107879961	107945070	A3SS	ENSMUST00000207966.2	novel	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.43	3	4	3	4	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.50	1	1	1	1	n	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000086629.9	2810403D21Rik	chrX	lncRNA	RIKEN cDNA 2810403D21 gene
novel_NIR_20926	chrX	107901978	107915078	+	107879961	107915078	A5SS	ENSMUST00000144421.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.25	2	6	2	6	y	0.38	3	5	3	5	y	0.20	1	4	1	4	n	0.50	1	1	1	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.17	1	5	1	5	n	ENSMUSG00000086629.9	2810403D21Rik	chrX	lncRNA	RIKEN cDNA 2810403D21 gene
novel_NIR_20927	chrX	107901978	107915078	+	107901978	107929951	A3SS	ENSMUST00000153212.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.33	2	4	2	4	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	ENSMUSG00000086629.9	2810403D21Rik	chrX	lncRNA	RIKEN cDNA 2810403D21 gene
novel_NIR_20928	chrX	108240492	108241466	+	108240492	108241382	A3SS	ENSMUST00000133614.8	novel	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000031246.15	Sh3bgrl	chrX	protein_coding	SH3-binding domain glutamic acid-rich protein like
novel_NIR_20929	chrX	108240492	108241466	+	108240492	108241905	A3SS	ENSMUST00000139259.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000048621.4	Gm6377	chrX	protein_coding	predicted gene 6377
novel_NIR_20930	chrX	12001108	12002575	-	12001108	12002640	A5SS	ENSMUST00000209776.2	novel	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	1	0	1	n	0.33	2	4	2	4	y	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.10	1	9	1	9	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	ENSMUSG00000040363.16	Bcor	chrX	protein_coding	BCL6 interacting corepressor
novel_NIR_20931	chrX	12576412	12579822	-	12572931	12579822	A3SS	ENSMUST00000096495.11	novel	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.09	1	10	1	10	n	0.00	0	10	0	10	n	0.17	2	10	2	10	y	ENSMUSG00000064127.14	Med14	chrX	protein_coding	mediator complex subunit 14
novel_NIR_20932	chrX	12595286	12610956	-	12594378	12610956	A3SS	ENSMUST00000096495.11	novel	0.25	2	6	2	6	y	0.50	3	3	3	3	y	0.09	2	21	2	21	n	0.27	3	8	3	8	y	0.06	1	17	1	17	n	0.00	0	5	0	5	n	0.04	1	23	1	23	n	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.36	5	9	5	9	y	0.33	2	4	2	4	y	0.22	4	14	4	14	y	ENSMUSG00000064127.14	Med14	chrX	protein_coding	mediator complex subunit 14
novel_NIR_20933	chrX	12611067	12612864	-	12611067;12612135	12611985;12612864	ES	ENSMUST00000096495.11	novel	0.00	0	9.5	0	12;7	n	0.16	2	10.5	2	11;10	y	0.06	1	16.5	1	19;14	n	0.00	0	19.5	0	22;17	n	0.00	0	24.5	0	28;21	n	0.00	0	14.0	0	15;13	n	0.00	0	17.0	0	17;17	n	0.00	0	17.5	0	19;16	n	0.21	2	7.5	2	10;5	y	0.00	0	22.5	0	23;22	n	0.00	0	14.5	0	13;16	n	0.00	0	21.0	0	25;17	n	ENSMUSG00000064127.14	Med14	chrX	protein_coding	mediator complex subunit 14
novel_NIR_20934	chrX	12624565	12627706	-	12622694	12627706	A3SS	ENSMUST00000096495.11	novel	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	18	0	18	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.22	2	7	2	7	y	ENSMUSG00000064127.14	Med14	chrX	protein_coding	mediator complex subunit 14
novel_NIR_20935	chrX	12908341	12909796	+	12908348	12909796	A5SS	ENSMUST00000127521.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	1.00	3	0	3	0	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000087424.2	5730405O15Rik	chrX	lncRNA	RIKEN cDNA 5730405O15 gene
novel_NIR_20936	chrX	12908606	12909796	+	12908348	12909796	A5SS	ENSMUST00000127521.2	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	1.00	1	0	1	0	n	0.33	2	4	2	4	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000087424.2	5730405O15Rik	chrX	lncRNA	RIKEN cDNA 5730405O15 gene
novel_NIR_20937	chrX	12909895	12910839	+	12909895	12910843	A3SS	ENSMUST00000130099.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000087424.2	5730405O15Rik	chrX	lncRNA	RIKEN cDNA 5730405O15 gene
novel_NIR_20938	chrX	12909895	12919474	+	12909895	12910843	3pMXE	ENSMUST00000130099.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000087424.2	5730405O15Rik	chrX	lncRNA	RIKEN cDNA 5730405O15 gene
novel_NIR_20939	chrX	12919589	12960163	+	12937972	12960163	5pMXE	ENSMUST00000139764.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000031010.18	Usp9x	chrX	protein_coding	ubiquitin specific peptidase 9, X chromosome
novel_NIR_20940	chrX	129228810	129352463	+	129228810	129361620	A3SS	ENSMUST00000167619.9	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	19	0	19	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.09	1	10	1	10	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.25	3	9	3	9	y	0.00	0	4	0	4	n	0.00	0	11	0	11	n	ENSMUSG00000034480.19	Diaph2	chrX	protein_coding	diaphanous related formin 2
novel_NIR_20941	chrX	13101738	13104748	-	13101738	13102440	5pMXE	ENSMUST00000186827.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000100714.7	2010308F09Rik	chrX	lncRNA	RIKEN cDNA 2010308F09 gene
novel_NIR_20942	chrX	13101738	13104748	-	13101738	13113744	A5SS	ENSMUST00000186931.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000100714.7	2010308F09Rik	chrX	lncRNA	RIKEN cDNA 2010308F09 gene
novel_NIR_20943	chrX	133168265	133177595	-	133168310	133177595	A3SS	ENSMUST00000128115.8	novel	0.00	0	17	0	17	n	0.00	0	8	0	8	n	0.12	3	23	3	23	n	0.07	3	39	3	39	n	0.00	0	43	0	43	n	0.00	0	17	0	17	n	0.02	1	41	1	41	n	0.00	0	20	0	20	n	0.00	0	30	0	30	n	0.00	0	51	0	51	n	0.17	3	15	3	15	y	0.00	0	49	0	49	n	ENSMUSG00000067369.13	Trmt2b	chrX	protein_coding	TRM2 tRNA methyltransferase 2B
novel_NIR_20944	chrX	133168265	133177595	-	133171334	133177595	A3SS&ES	ENSMUST00000113252.8	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.38	3	5	3	5	y	0.43	3	4	3	4	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.75	3	1	3	1	y	0.00	0	5	0	5	n	ENSMUSG00000067369.13	Trmt2b	chrX	protein_coding	TRM2 tRNA methyltransferase 2B
novel_NIR_20945	chrX	133168302	133177595	-	133171334	133177595	A3SS&ES	ENSMUST00000113252.8	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.43	3	4	3	4	y	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	ENSMUSG00000067369.13	Trmt2b	chrX	protein_coding	TRM2 tRNA methyltransferase 2B
novel_NIR_20946	chrX	133486932	133487265	+	133486932	133487261	A3SS	ENSMUST00000170828.2	novel	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000079435.10	Rpl36a	chrX	protein_coding	ribosomal protein L36A
novel_NIR_20947	chrX	133589653	133590171	+	133589653	133589966	A3SS	ENSMUST00000124226.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	4	0	4	n	0.50	1	1	1	1	n	1.00	3	0	3	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000049804.10	Armcx4	chrX	protein_coding	armadillo repeat containing, X-linked 4
novel_NIR_20948	chrX	133657634	133658013	+	133657634	133657985	A3SS	ENSMUST00000086884.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000049047.12	Armcx3	chrX	protein_coding	armadillo repeat containing, X-linked 3
novel_NIR_20949	chrX	133874775	133876067	-	133874775	133878397	A5SS	ENSMUST00000113185.9	novel	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.44	4	5	4	5	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.50	4	4	4	4	n	0.00	0	5	0	5	n	1.00	2	0	2	0	y	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.21	4	15	4	15	n	ENSMUSG00000052676.17	Zmat1	chrX	protein_coding	zinc finger, matrin type 1
novel_NIR_20950	chrX	133874775;133876111	133876067;133878397	-	133874775	133878397	cassetteExon	ENSMUST00000113185.9	novel	0.00	0.0	7	0;0	7	n	0.00	0.0	11	0;0	11	n	0.41	3.5	5	4;3	5	y	0.00	0.0	3	0;0	3	n	0.29	2.0	5	1;3	5	n	0.00	0.0	3	0;0	3	n	0.43	3.0	4	4;2	4	y	0.00	0.0	5	0;0	5	n	1.00	1.0	0	2;0	0	n	0.00	0.0	11	0;0	11	n	0.08	0.5	6	0;1	6	n	0.17	3.0	15	4;2	15	y	ENSMUSG00000052676.17	Zmat1	chrX	protein_coding	zinc finger, matrin type 1
novel_NIR_20951	chrX	134649531	134651264	+	134649531	134652694	A3SS	ENSMUST00000149595.8	novel	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	20	0	20	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.00	0	13	0	13	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.18	2	9	2	9	y	0.00	0	15	0	15	n	ENSMUSG00000043384.16	Gprasp1	chrX	protein_coding	G protein-coupled receptor associated sorting protein 1
novel_NIR_20952	chrX	134649531	134651285	+	134649531	134652694	A3SS	ENSMUST00000149595.8	novel	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.09	2	20	2	20	n	0.00	0	10	0	10	n	0.25	5	15	5	15	n	0.18	2	9	2	9	y	0.19	3	13	3	13	n	0.00	0	11	0	11	n	0.25	2	6	2	6	n	0.06	1	15	1	15	n	0.10	1	9	1	9	n	0.00	0	15	0	15	n	ENSMUSG00000043384.16	Gprasp1	chrX	protein_coding	G protein-coupled receptor associated sorting protein 1
novel_NIR_20953	chrX	134649531;134651335	134651285;134652694	+	134649531	134652694	cassetteExon	ENSMUST00000149595.8	novel	0.00	0.0	10	0;0	10	n	0.11	1.0	8	0;2	8	n	0.07	1.5	20	2;1	20	n	0.05	0.5	10	0;1	10	n	0.25	5.0	15	5;5	15	y	0.10	1.0	9	2;0	9	n	0.16	2.5	13	3;2	13	y	0.08	1.0	11	0;2	11	n	0.29	2.5	6	2;3	6	y	0.03	0.5	15	1;0	15	n	0.05	0.5	9	1;0	9	n	0.00	0.0	15	0;0	15	n	ENSMUSG00000043384.16	Gprasp1	chrX	protein_coding	G protein-coupled receptor associated sorting protein 1
novel_NIR_20954	chrX	134651335	134652694	+	134649531	134652694	A5SS	ENSMUST00000149595.8	novel	0.00	0	10	0	10	n	0.20	2	8	2	8	y	0.05	1	20	1	20	n	0.09	1	10	1	10	n	0.25	5	15	5	15	n	0.00	0	9	0	9	n	0.13	2	13	2	13	n	0.15	2	11	2	11	y	0.33	3	6	3	6	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.00	0	15	0	15	n	ENSMUSG00000043384.16	Gprasp1	chrX	protein_coding	G protein-coupled receptor associated sorting protein 1
novel_NIR_20955	chrX	134652766	134675352	+	134652766	134662478	3pMXE	ENSMUST00000149595.8	novel	0.00	0	22	0	22	n	0.14	1	6	1	6	n	0.00	0	21	0	21	n	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.08	1	12	1	12	n	0.12	2	15	2	15	n	0.00	0	17	0	17	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.15	3	17	3	17	y	ENSMUSG00000043384.16	Gprasp1	chrX	protein_coding	G protein-coupled receptor associated sorting protein 1
novel_NIR_20956	chrX	134652766	134675352	+	134652766	134696891	A3SS	ENSMUST00000113144.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000043384.16	Gprasp1	chrX	protein_coding	G protein-coupled receptor associated sorting protein 1
novel_NIR_20957	chrX	134652766	134675352	+	134652766	134698302	A3SS	ENSMUST00000113147.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000043384.16	Gprasp1	chrX	protein_coding	G protein-coupled receptor associated sorting protein 1
novel_NIR_20958	chrX	134652766	134679655	+	134652725	134679655	A5SS	ENSMUST00000143034.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000043384.16	Gprasp1	chrX	protein_coding	G protein-coupled receptor associated sorting protein 1
novel_NIR_20959	chrX	134652766	134679655	+	134652766	134696891	A3SS	ENSMUST00000113144.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000043384.16	Gprasp1	chrX	protein_coding	G protein-coupled receptor associated sorting protein 1
novel_NIR_20960	chrX	134652766	134679655	+	134652766	134698302	A3SS	ENSMUST00000113147.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000043384.16	Gprasp1	chrX	protein_coding	G protein-coupled receptor associated sorting protein 1
novel_NIR_20961	chrX	134662596	134696891	+	134652766	134696891	A5SS	ENSMUST00000113144.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000043384.16	Gprasp1	chrX	protein_coding	G protein-coupled receptor associated sorting protein 1
novel_NIR_20962	chrX	134697085	134697660	+	134697085	134697698	A3SS	ENSMUST00000113144.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000043384.16	Gprasp1	chrX	protein_coding	G protein-coupled receptor associated sorting protein 1
novel_NIR_20963	chrX	134698378	134741142	+	134698378	134741368	A3SS	ENSMUST00000207433.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000072964.15	Bhlhb9	chrX	protein_coding	basic helix-loop-helix domain containing, class B9
novel_NIR_20964	chrX	134698378	134741142	+	134740011	134741142	5pMXE	ENSMUST00000141953.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000072966.12	Gprasp2	chrX	protein_coding	G protein-coupled receptor associated sorting protein 2
novel_NIR_20965	chrX	134698378	134741142	+	134740621	134741142	5pMXE	ENSMUST00000142034.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000072966.12	Gprasp2	chrX	protein_coding	G protein-coupled receptor associated sorting protein 2
novel_NIR_20966	chrX	135636371	135637984	-	135636371	135644342	A5SS	ENSMUST00000166478.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031422.17	Morf4l2	chrX	protein_coding	mortality factor 4 like 2
novel_NIR_20967	chrX	135636371	135640223	-	135636371	135644342	A5SS	ENSMUST00000166478.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	8	0	8	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031422.17	Morf4l2	chrX	protein_coding	mortality factor 4 like 2
novel_NIR_20968	chrX	135636391	135640554	-	135635250	135640554	A3SS	ENSMUST00000169418.8	novel	0.40	2	3	2	3	y	-	-	-	-	-	-	0.17	1	5	1	5	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000031422.17	Morf4l2	chrX	protein_coding	mortality factor 4 like 2
novel_NIR_20969	chrX	135640326	135640554	-	135635250	135640554	A3SS	ENSMUST00000169418.8	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.69	11	5	11	5	y	0.25	1	3	1	3	n	1.00	2	0	2	0	y	0.20	1	4	1	4	n	0.50	4	4	4	4	y	0.67	2	1	2	1	y	0.67	4	2	4	2	y	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000031422.17	Morf4l2	chrX	protein_coding	mortality factor 4 like 2
novel_NIR_20970	chrX	135658945	135659314	+	135658945	135659309	A3SS	ENSMUST00000134672.8	novel	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000087368.8	BC065397	chrX	lncRNA	cDNA sequence BC065397
novel_NIR_20971	chrX	135662837	135665909	+	135662837	135689270	A3SS	ENSMUST00000134066.8	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.80	4	1	4	1	y	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000087368.8	BC065397	chrX	lncRNA	cDNA sequence BC065397
novel_NIR_20972	chrX	135684357	135689270	+	135662837	135689270	A5SS	ENSMUST00000134066.8	novel	-	-	-	-	-	-	0.75	3	1	3	1	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	ENSMUSG00000087368.8	BC065397	chrX	lncRNA	cDNA sequence BC065397
novel_NIR_20973	chrX	135684357	135689270	+	135666513	135689270	A5SS	ENSMUST00000145620.2	novel	-	-	-	-	-	-	1.00	3	0	3	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000087368.8	BC065397	chrX	lncRNA	cDNA sequence BC065397
novel_NIR_20974	chrX	135689366	135721179	+	135689366	135703601	3pMXE	ENSMUST00000134066.8	novel	0.67	2	1	2	1	y	0.00	0	2	0	2	n	1.00	4	0	4	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000087368.8	BC065397	chrX	lncRNA	cDNA sequence BC065397
novel_NIR_20975	chrX	135917088	135933100	-	135917088	135928739	A5SS&ES	ENSMUST00000113070.9	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.40	2	3	2	3	y	0.00	0	10	0	10	n	ENSMUSG00000044348.15	Slc25a53	chrX	protein_coding	solute carrier family 25, member 53
novel_NIR_20976	chrX	135917088	135933100	-	135917088	135938915	A5SS	ENSMUST00000148253.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000044348.15	Slc25a53	chrX	protein_coding	solute carrier family 25, member 53
novel_NIR_20977	chrX	135917088	135933100	-	135930848	135933100	3pMXE	ENSMUST00000125864.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.12	1	7	1	7	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.29	2	5	2	5	y	0.00	0	6	0	6	n	ENSMUSG00000044348.15	Slc25a53	chrX	protein_coding	solute carrier family 25, member 53
novel_NIR_20978	chrX	137983936	137985937	-	137983936;137984647	137984554;137985937	ES	ENSMUST00000060824.4	novel	-	-	-	-	-	-	0.53	5	4.5	5	2;7	y	0.00	0	17.0	0	0;34	n	0.00	0	0.5	0	0;1	n	0.00	0	2.0	0	0;4	n	0.22	1	3.5	1	4;3	n	0.00	0	1.0	0	0;2	n	0.00	0	3.0	0	0;6	n	0.00	0	2.0	0	0;4	n	0.19	2	8.5	2	5;12	y	0.00	0	3.0	0	2;4	n	0.00	0	4.0	0	1;7	n	ENSMUSG00000031271.15	Serpina7	chrX	protein_coding	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7
novel_NIR_20979	chrX	137983936	137985937	-	137984467	137985937	A3SS	ENSMUST00000033626.15	novel	0.00	0	9	0	9	n	0.15	5	29	5	29	y	0.00	0	90	0	90	n	0.00	0	11	0	11	n	0.00	0	18	0	18	n	0.17	1	5	1	5	n	0.00	0	20	0	20	n	0.00	0	23	0	23	n	0.00	0	6	0	6	n	0.08	2	24	2	24	n	0.00	0	13	0	13	n	0.00	0	15	0	15	n	ENSMUSG00000031271.15	Serpina7	chrX	protein_coding	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7
novel_NIR_20980	chrX	137984072	137985937	-	137984467	137985937	A3SS	ENSMUST00000033626.15	novel	0.00	0	9	0	9	n	0.00	0	29	0	29	n	0.00	0	90	0	90	n	0.00	0	11	0	11	n	0.00	0	18	0	18	n	0.00	0	5	0	5	n	0.00	0	20	0	20	n	0.00	0	23	0	23	n	0.25	2	6	2	6	y	0.00	0	24	0	24	n	0.00	0	13	0	13	n	0.00	0	15	0	15	n	ENSMUSG00000031271.15	Serpina7	chrX	protein_coding	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7
novel_NIR_20981	chrX	137984072	137985937	-	137984647	137985937	A3SS&ES	ENSMUST00000060824.4	novel	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	34	0	34	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.33	2	4	2	4	y	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	ENSMUSG00000031271.15	Serpina7	chrX	protein_coding	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7
novel_NIR_20982	chrX	138541544	138543035	+	138464632	138543035	A5SS	ENSMUST00000113027.8	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	11	0	11	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	ENSMUSG00000031438.12	Rnf128	chrX	protein_coding	ring finger protein 128
novel_NIR_20983	chrX	138681937	138683517	-	138681937	138682897	5pMXE	ENSMUST00000101217.4	novel	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.14	3	19	3	19	n	0.00	0	4	0	4	n	0.09	1	10	1	10	n	0.00	0	2	0	2	n	0.18	2	9	2	9	y	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	ENSMUSG00000072945.4	Ripply1	chrX	protein_coding	ripply transcriptional repressor 1
novel_NIR_20984	chrX	139499307	139499627	-	139499307	139501186	A5SS	ENSMUST00000112996.9	novel	0.50	1	1	1	1	n	0.67	2	1	2	1	y	0.40	2	3	2	3	y	0.75	3	1	3	1	y	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.14	1	6	1	6	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.25	1	3	1	3	n	ENSMUSG00000031431.14	Tsc22d3	chrX	protein_coding	TSC22 domain family, member 3
novel_NIR_20985	chrX	139499307	139499666	-	139499307	139501186	A5SS	ENSMUST00000112996.9	novel	0.75	3	1	3	1	y	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.67	2	1	2	1	y	0.33	2	4	2	4	y	0.29	2	5	2	5	y	0.14	1	6	1	6	n	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.57	4	3	4	3	y	-	-	-	-	-	-	0.25	1	3	1	3	n	ENSMUSG00000031431.14	Tsc22d3	chrX	protein_coding	TSC22 domain family, member 3
novel_NIR_20986	chrX	139499307	139500062	-	139499307	139501186	A5SS	ENSMUST00000112996.9	novel	0.00	0	1	0	1	n	0.80	4	1	4	1	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.43	3	4	3	4	y	0.00	0	5	0	5	n	0.40	4	6	4	6	y	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.50	3	3	3	3	y	1.00	1	0	1	0	n	0.00	0	3	0	3	n	ENSMUSG00000031431.14	Tsc22d3	chrX	protein_coding	TSC22 domain family, member 3
novel_NIR_20987	chrX	139499307	139500149	-	139499307	139501186	A5SS	ENSMUST00000112996.9	novel	0.97	32	1	32	1	y	0.95	19	1	19	1	y	0.80	12	3	12	3	y	0.95	18	1	18	1	y	0.89	32	4	32	4	y	0.44	4	5	4	5	y	0.84	32	6	32	6	y	0.82	14	3	14	3	y	0.75	12	4	12	4	y	0.73	8	3	8	3	y	1.00	12	0	12	0	y	0.70	7	3	7	3	y	ENSMUSG00000031431.14	Tsc22d3	chrX	protein_coding	TSC22 domain family, member 3
novel_NIR_20988	chrX	139850058	139852909	-	139850058	139852975	A5SS	ENSMUST00000112978.2	novel	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	17	0	17	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.25	2	6	2	6	y	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	ENSMUSG00000031429.15	Psmd10	chrX	protein_coding	proteasome (prosome, macropain) 26S subunit, non-ATPase, 10
novel_NIR_20989	chrX	141661220	141749204	-	141661220;141695279	141695169;141749204	ES	ENSMUST00000041317.3	novel	0.00	0	0.5	0	1;0	n	0.00	0	1.0	0	1;1	n	0.00	0	3.0	0	0;6	n	0.00	0	2.0	0	1;3	n	0.00	0	2.5	0	2;3	n	0.00	0	4.0	0	4;4	n	0.00	0	2.5	0	2;3	n	0.00	0	3.5	0	5;2	n	0.00	0	1.0	0	2;0	n	0.00	0	4.0	0	5;3	n	0.00	0	0.5	0	0;1	n	0.36	2	3.5	2	5;2	y	ENSMUSG00000042225.4	Ammecr1	chrX	protein_coding	Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
novel_NIR_20990	chrX	143105146	143119329	+	143105146	143107012	3pMXE	ENSMUST00000070801.11	novel	0.20	2	8	2	8	y	0.00	0	10	0	10	n	0.00	0	22	0	22	n	0.00	0	14	0	14	n	0.00	0	15	0	15	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.33	1	2	1	2	n	0.00	0	9	0	9	n	0.11	1	8	1	8	n	0.00	0	9	0	9	n	0.00	0	16	0	16	n	ENSMUSG00000041718.17	Alg13	chrX	protein_coding	asparagine-linked glycosylation 13
novel_NIR_20991	chrX	143105146	143119329	+	143105146	143119108	A3SS	ENSMUST00000197316.5	novel	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.17	1	5	1	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000041718.17	Alg13	chrX	protein_coding	asparagine-linked glycosylation 13
novel_NIR_20992	chrX	143105146	143119329	+	143105146	143121960	A3SS	ENSMUST00000198039.5	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041718.17	Alg13	chrX	protein_coding	asparagine-linked glycosylation 13
novel_NIR_20993	chrX	144270697	144272820	-	144270652	144272820	A3SS	ENSMUST00000143610.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	ENSMUSG00000041688.17	Amot	chrX	protein_coding	angiomotin
novel_NIR_20994	chrX	144270697	144279985	-	144263454	144279985	A3SS	ENSMUST00000112835.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.75	3	1	3	1	y	0.00	0	2	0	2	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041688.17	Amot	chrX	protein_coding	angiomotin
novel_NIR_20995	chrX	144270697	144279985	-	144272968	144279985	A3SS&ES	ENSMUST00000143610.3	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.30	3	7	3	7	y	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.25	1	3	1	3	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000041688.17	Amot	chrX	protein_coding	angiomotin
novel_NIR_20996	chrX	146180976	146186729	-	146180976;146183925	146183818;146186729	ES	ENSMUST00000033646.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	0.00	0	1.0	0	0;2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.40	1	1.5	1	1;2	n	-	-	-	-	-	-	0.00	0	1.0	0	1;1	n	-	-	-	-	-	-	1.00	7	0.0	7	0;0	y	-	-	-	-	-	-	ENSMUSG00000031289.11	Il13ra2	chrX	protein_coding	interleukin 13 receptor, alpha 2
novel_NIR_20997	chrX	149192596	149192921	-	149192596	149203338	A5SS	ENSMUST00000141948.8	novel	0.02	1	42	1	42	n	0.07	3	39	3	39	n	0.14	6	37	6	37	n	0.00	0	39	0	39	n	0.05	3	52	3	52	n	0.06	3	50	3	50	n	0.14	6	37	6	37	n	0.00	0	46	0	46	n	0.14	6	37	6	37	n	0.08	6	67	6	67	n	0.16	10	52	10	52	y	0.12	10	73	10	73	n	ENSMUSG00000041353.13	Tmem29	chrX	protein_coding	transmembrane protein 29
novel_NIR_20998	chrX	149192971	149203338	-	149181912	149203338	A3SS	ENSMUST00000059256.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000041353.13	Tmem29	chrX	protein_coding	transmembrane protein 29
novel_NIR_20999	chrX	149193186	149203338	-	149181912	149203338	A3SS	ENSMUST00000059256.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041353.13	Tmem29	chrX	protein_coding	transmembrane protein 29
novel_NIR_21000	chrX	149194799	149203338	-	149181912	149203338	A3SS	ENSMUST00000059256.8	novel	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	5	0	5	0	y	1.00	7	0	7	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	6	0	6	0	y	ENSMUSG00000041353.13	Tmem29	chrX	protein_coding	transmembrane protein 29
novel_NIR_21001	chrX	149194799	149203338	-	149192596	149203338	A3SS	ENSMUST00000141948.8	novel	0.05	2	42	2	42	n	0.05	2	39	2	39	n	0.07	3	37	3	37	n	0.09	4	39	4	39	n	0.04	2	52	2	52	n	0.02	1	50	1	50	n	0.10	4	37	4	37	n	0.10	5	46	5	46	n	0.16	7	37	7	37	y	0.00	0	67	0	67	n	0.05	3	52	3	52	n	0.08	6	73	6	73	n	ENSMUSG00000041353.13	Tmem29	chrX	protein_coding	transmembrane protein 29
novel_NIR_21002	chrX	149196117	149203338	-	149181912	149203338	A3SS	ENSMUST00000059256.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041353.13	Tmem29	chrX	protein_coding	transmembrane protein 29
novel_NIR_21003	chrX	149203437	149285482	-	149203437	149218366	5pMXE	ENSMUST00000143526.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041353.13	Tmem29	chrX	protein_coding	transmembrane protein 29
novel_NIR_21004	chrX	149203437	149285482	-	149203437	149223763	5pMXE	ENSMUST00000163233.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.09	1	10	1	10	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	ENSMUSG00000041353.13	Tmem29	chrX	protein_coding	transmembrane protein 29
novel_NIR_21005	chrX	149203437	149285482	-	149203437	149223976	5pMXE	ENSMUST00000059256.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000041353.13	Tmem29	chrX	protein_coding	transmembrane protein 29
novel_NIR_21006	chrX	149306200	149367461	-	149305206	149367461	A3SS	ENSMUST00000112725.8	novel	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	ENSMUSG00000025269.17	Apex2	chrX	protein_coding	apurinic/apyrimidinic endonuclease 2
novel_NIR_21007	chrX	149371274	149372816	-	149371274	149372758	A5SS	ENSMUST00000112725.8	novel	0.50	1	1	1	1	n	0.33	1	2	1	2	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.43	3	4	3	4	y	0.50	2	2	2	2	y	0.20	2	8	2	8	y	0.00	0	3	0	3	n	0.33	1	2	1	2	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.50	1	1	1	1	n	ENSMUSG00000025269.17	Apex2	chrX	protein_coding	apurinic/apyrimidinic endonuclease 2
novel_NIR_21008	chrX	149394095	149395879	+	149394095	149395910	A3SS	ENSMUST00000124381.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025271.14	Pfkfb1	chrX	protein_coding	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1
novel_NIR_21009	chrX	149394095	149396873	+	149394095	149395910	3pMXE	ENSMUST00000124381.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000025271.14	Pfkfb1	chrX	protein_coding	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1
novel_NIR_21010	chrX	149405199	149405876	+	149405199	149407143	A3SS	ENSMUST00000142848.2	novel	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.60	6	4	6	4	y	0.12	1	7	1	7	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.82	9	2	9	2	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.75	3	1	3	1	y	ENSMUSG00000025271.14	Pfkfb1	chrX	protein_coding	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1
novel_NIR_21011	chrX	149797085	149799000	-	149797085	149800201	A5SS	ENSMUST00000026297.12	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025266.12	Gnl3l	chrX	protein_coding	guanine nucleotide binding protein-like 3 (nucleolar)-like
novel_NIR_21012	chrX	149799030	149800197	-	149797146	149800197	A3SS	ENSMUST00000156233.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025266.12	Gnl3l	chrX	protein_coding	guanine nucleotide binding protein-like 3 (nucleolar)-like
novel_NIR_21013	chrX	149874763	149875401	-	149874763	149879425	A5SS	ENSMUST00000166010.2	novel	0.00	0	6	0	6	n	1.00	2	0	2	0	y	0.00	0	6	0	6	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000025264.13	Tsr2	chrX	protein_coding	TSR2 20S rRNA accumulation
novel_NIR_21014	chrX	150182799	150188631	+	150182799	150211913	A3SS	ENSMUST00000073364.6	novel	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.25	1	3	1	3	n	0.00	0	5	0	5	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	ENSMUSG00000025262.9	Fam120c	chrX	protein_coding	family with sequence similarity 120, member C
novel_NIR_21015	chrX	150304084	150305384	+	150304315	150305384	5pMXE	ENSMUST00000112670.8	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.33	2	4	2	4	y	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	ENSMUSG00000041229.16	Phf8	chrX	protein_coding	PHD finger protein 8
novel_NIR_21016	chrX	150304084	150305384	+	150304433	150305384	A5SS	ENSMUST00000112666.8	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041229.16	Phf8	chrX	protein_coding	PHD finger protein 8
novel_NIR_21017	chrX	150587536	150589272	+	150586798	150589272	A5SS	ENSMUST00000138566.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000025261.19	Huwe1	chrX	protein_coding	HECT, UBA and WWE domain containing 1
novel_NIR_21018	chrX	150587536	150589272	+	150587536	150589268	A3SS	ENSMUST00000149344.8	novel	0.67	2	1	2	1	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	1.00	1	0	1	0	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.00	0	7	0	7	n	ENSMUSG00000025261.19	Huwe1	chrX	protein_coding	HECT, UBA and WWE domain containing 1
novel_NIR_21019	chrX	150654652	150657765	+	150654652	150656673	3pMXE	ENSMUST00000123306.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025261.19	Huwe1	chrX	protein_coding	HECT, UBA and WWE domain containing 1
novel_NIR_21020	chrX	150659876	150661714	+	150659903	150661714	A5SS	ENSMUST00000026292.15	novel	0.00	0	17	0	17	n	0.00	0	11	0	11	n	0.10	3	28	3	28	n	0.03	1	37	1	37	n	0.00	0	46	0	46	n	0.17	3	15	3	15	y	0.09	2	21	2	21	n	0.00	0	30	0	30	n	0.00	0	14	0	14	n	0.06	2	29	2	29	n	0.00	0	11	0	11	n	0.13	4	27	4	27	n	ENSMUSG00000025261.19	Huwe1	chrX	protein_coding	HECT, UBA and WWE domain containing 1
novel_NIR_21021	chrX	150677014	150677923	+	150677014	150677917	A3SS	ENSMUST00000026292.15	novel	0.10	2	19	2	19	n	0.00	0	10	0	10	n	0.00	0	43	0	43	n	0.08	4	46	4	46	n	0.05	3	61	3	61	n	0.00	0	18	0	18	n	0.05	2	37	2	37	n	0.05	1	20	1	20	n	0.05	1	20	1	20	n	0.18	9	40	9	40	y	0.14	3	19	3	19	n	0.00	0	46	0	46	n	ENSMUSG00000025261.19	Huwe1	chrX	protein_coding	HECT, UBA and WWE domain containing 1
novel_NIR_21022	chrX	150688427	150689947	+	150688427	150691727	A3SS	ENSMUST00000150426.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	n	1.00	3	0	3	0	n	1.00	2	0	2	0	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	6	0	6	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	n	ENSMUSG00000025261.19	Huwe1	chrX	protein_coding	HECT, UBA and WWE domain containing 1
novel_NIR_21023	chrX	150688427	150691724	+	150688427	150691727	A3SS	ENSMUST00000150426.8	novel	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000025261.19	Huwe1	chrX	protein_coding	HECT, UBA and WWE domain containing 1
novel_NIR_21024	chrX	150688427;150690440	150689947;150691727	+	150688427	150691727	cassetteExon	ENSMUST00000150426.8	novel	-	-	-	-	-	-	1.00	1.0	0	2;0	0	n	1.00	2.5	0	2;3	0	y	1.00	2.0	0	3;1	0	n	1.00	2.0	0	2;2	0	y	0.00	0.0	1	0;0	1	n	1.00	0.5	0	1;0	0	n	-	-	-	-	-	-	1.00	3.0	0	6;0	0	n	1.00	5.0	0	1;9	0	n	1.00	1.0	0	1;1	0	n	1.00	3.0	0	3;3	0	y	ENSMUSG00000025261.19	Huwe1	chrX	protein_coding	HECT, UBA and WWE domain containing 1
novel_NIR_21025	chrX	150706557	150707658	+	150706602	150707658	A5SS	ENSMUST00000026292.15	novel	0.46	48	56	48	56	y	0.49	39	41	39	41	y	0.38	46	74	46	74	y	0.39	48	74	48	74	y	0.42	77	108	77	108	y	0.34	26	50	26	50	y	0.43	54	72	54	72	y	0.41	32	46	32	46	y	0.52	60	55	60	55	y	0.49	78	80	78	80	y	0.43	49	64	49	64	y	0.45	63	78	63	78	y	ENSMUSG00000025261.19	Huwe1	chrX	protein_coding	HECT, UBA and WWE domain containing 1
novel_NIR_21026	chrX	150798864	150799120	-	150792637	150799120	A3SS	ENSMUST00000133517.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025257.6	Ribc1	chrX	protein_coding	RIB43A domain with coiled-coils 1
novel_NIR_21027	chrX	150798864	150799120	-	150798864	150799159	A5SS	ENSMUST00000026288.5	novel	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025257.6	Ribc1	chrX	protein_coding	RIB43A domain with coiled-coils 1
novel_NIR_21028	chrX	150798864	150799716	-	150798864	150799159	5pMXE	ENSMUST00000026288.5	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	ENSMUSG00000025257.6	Ribc1	chrX	protein_coding	RIB43A domain with coiled-coils 1
novel_NIR_21029	chrX	150962086	150969672	+	150962086	150963993	A3SS&ES	ENSMUST00000146835.8	novel	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.50	2	2	2	2	y	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	ENSMUSG00000041115.17	Iqsec2	chrX	protein_coding	IQ motif and Sec7 domain 2
novel_NIR_21030	chrX	150962086	150969672	+	150962086	150976862	A3SS	ENSMUST00000128724.8	novel	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.33	2	4	2	4	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	ENSMUSG00000041115.17	Iqsec2	chrX	protein_coding	IQ motif and Sec7 domain 2
novel_NIR_21031	chrX	150962086	150969672	+	150962086	150985904	A3SS	ENSMUST00000153356.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041115.17	Iqsec2	chrX	protein_coding	IQ motif and Sec7 domain 2
novel_NIR_21032	chrX	151023192	151025036	+	151023192	151025033	A3SS	ENSMUST00000112584.8	novel	0.12	3	21	3	21	n	0.10	3	26	3	26	n	0.05	4	77	4	77	n	0.03	1	35	1	35	n	0.12	7	50	7	50	n	0.06	2	29	2	29	n	0.14	7	42	7	42	n	0.02	1	40	1	40	n	0.12	3	21	3	21	n	0.15	7	40	7	40	y	0.03	1	30	1	30	n	0.10	5	43	5	43	n	ENSMUSG00000025332.15	Kdm5c	chrX	protein_coding	lysine (K)-specific demethylase 5C
novel_NIR_21033	chrX	151055897	151056231	+	151055897	151056047	A3SS	ENSMUST00000155793.2	novel	0.25	3	9	3	9	y	0.25	1	3	1	3	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.19	3	13	3	13	y	0.29	6	15	6	15	y	0.00	0	11	0	11	n	0.09	1	10	1	10	n	0.14	1	6	1	6	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	ENSMUSG00000025332.15	Kdm5c	chrX	protein_coding	lysine (K)-specific demethylase 5C
novel_NIR_21034	chrX	154045670	154047153	+	154045670	154046364	3pMXE	ENSMUST00000134662.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025287.16	Acot9	chrX	protein_coding	acyl-CoA thioesterase 9
novel_NIR_21035	chrX	154045670;154047176	154047153;154052655	+	154045670;154047089	154047032;154052655	MXE	ENSMUST00000131332.8	novel	-	-	-	-	-	-	0.00	0.0	0.5	0;0	0;1	n	1.00	2.0	0.0	2;2	0;0	y	-	-	-	-	-	-	0.00	0.0	1.5	0;0	1;2	n	-	-	-	-	-	-	0.00	0.0	1.0	0;0	0;2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0.0	1.0	0;0	0;2	n	ENSMUSG00000025287.16	Acot9	chrX	protein_coding	acyl-CoA thioesterase 9
novel_NIR_21036	chrX	154117951	154120269	-	154117951	154123305	A5SS	ENSMUST00000130349.3	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025289.16	Prdx4	chrX	protein_coding	peroxiredoxin 4
novel_NIR_21037	chrX	156376869	156381307	-	156376869	156381492	A5SS	ENSMUST00000058098.15	novel	0.14	1	6	1	6	n	0.67	2	1	2	1	y	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	ENSMUSG00000046873.19	Mbtps2	chrX	protein_coding	membrane-bound transcription factor peptidase, site 2
novel_NIR_21038	chrX	156485616	156485952	+	156485571	156485952	A5SS	ENSMUST00000136141.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041476.13	Smpx	chrX	protein_coding	small muscle protein, X-linked
novel_NIR_21039	chrX	156485616	156485952	+	156485733	156485952	A5SS	ENSMUST00000112520.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000041476.13	Smpx	chrX	protein_coding	small muscle protein, X-linked
novel_NIR_21040	chrX	158061199	158068262	+	158039184	158068262	A5SS	ENSMUST00000033671.13	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.29	2	5	2	5	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000031309.16	Rps6ka3	chrX	protein_coding	ribosomal protein S6 kinase polypeptide 3
novel_NIR_21041	chrX	158061199	158068262	+	158061199;158062199	158062163;158068262	ES	ENSMUST00000112493.8	novel	0.00	0	3.5	0	4;3	n	0.00	0	2.5	0	2;3	n	0.00	0	7.5	0	6;9	n	0.00	0	3.0	0	3;3	n	0.36	2	3.5	2	3;4	y	0.00	0	2.0	0	2;2	n	0.00	0	3.5	0	3;4	n	-	-	-	-	-	-	0.00	0	0.5	0	0;1	n	0.33	1	2.0	1	2;2	n	0.00	0	1.5	0	1;2	n	0.00	0	4.5	0	3;6	n	ENSMUSG00000031309.16	Rps6ka3	chrX	protein_coding	ribosomal protein S6 kinase polypeptide 3
novel_NIR_21042	chrX	158061199	158068262	+	158062199	158068262	A5SS&ES	ENSMUST00000112492.8	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	ENSMUSG00000031309.16	Rps6ka3	chrX	protein_coding	ribosomal protein S6 kinase polypeptide 3
novel_NIR_21043	chrX	158920248	158920777	-	158920248	158921252	A5SS	ENSMUST00000127535.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031299.11	Pdha1	chrX	protein_coding	pyruvate dehydrogenase E1 alpha 1
novel_NIR_21044	chrX	159302578	159306268	+	159285900	159306268	A5SS	ENSMUST00000112377.8	novel	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.00	0	19	0	19	n	0.04	1	27	1	27	n	0.00	0	6	0	6	n	0.18	3	14	3	14	y	0.00	0	13	0	13	n	0.00	0	12	0	12	n	0.00	0	22	0	22	n	0.00	0	16	0	16	n	0.06	1	17	1	17	n	ENSMUSG00000031295.14	Phka2	chrX	protein_coding	phosphorylase kinase alpha 2
novel_NIR_21045	chrX	159332266	159337297	+	159332266;159335816	159335709;159337297	ES	ENSMUST00000112377.8	novel	0.00	0	18.5	0	18;19	n	0.00	0	9.5	0	7;12	n	0.00	0	9.0	0	11;7	n	0.16	4	21.0	4	20;22	y	0.00	0	35.0	0	25;45	n	0.00	0	9.0	0	10;8	n	0.00	0	26.0	0	25;27	n	0.00	0	21.0	0	22;20	n	0.00	0	22.0	0	29;15	n	0.00	0	32.5	0	31;34	n	0.00	0	11.0	0	13;9	n	0.00	0	22.5	0	25;20	n	ENSMUSG00000031295.14	Phka2	chrX	protein_coding	phosphorylase kinase alpha 2
novel_NIR_21046	chrX	159374025	159381464	+	159373364	159381464	A5SS	ENSMUST00000112380.9	novel	0.00	0	1	0	1	n	1.00	2	0	2	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.75	3	1	3	1	y	0.00	0	1	0	1	n	ENSMUSG00000031295.14	Phka2	chrX	protein_coding	phosphorylase kinase alpha 2
novel_NIR_21047	chrX	159380477	159381464	+	159373364	159381464	A5SS	ENSMUST00000112380.9	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000031295.14	Phka2	chrX	protein_coding	phosphorylase kinase alpha 2
novel_NIR_21048	chrX	161254852	161293285	-	161254852	161286767	A5SS&ES	ENSMUST00000101102.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040855.16	Reps2	chrX	protein_coding	RALBP1 associated Eps domain containing protein 2
novel_NIR_21049	chrX	161254852	161293285	-	161254852	161295675	A5SS	ENSMUST00000154424.8	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000040855.16	Reps2	chrX	protein_coding	RALBP1 associated Eps domain containing protein 2
novel_NIR_21050	chrX	161254852	161297275	-	161254852;161295728	161295675;161297275	ES	ENSMUST00000154424.8	novel	0.00	0	1.5	0	2;1	n	0.67	1	0.5	1	1;0	n	0.00	0	2.0	0	1;3	n	0.00	0	3.0	0	6;0	n	0.43	3	4.0	3	3;5	y	0.00	0	3.0	0	3;3	n	0.50	2	2.0	2	1;3	y	0.00	0	2.0	0	3;1	n	0.00	0	0.5	0	1;0	n	0.00	0	4.0	0	4;4	n	0.00	0	1.0	0	1;1	n	0.00	0	1.5	0	2;1	n	ENSMUSG00000040855.16	Reps2	chrX	protein_coding	RALBP1 associated Eps domain containing protein 2
novel_NIR_21051	chrX	161544292	161544571	+	161544159	161544571	A5SS	ENSMUST00000138791.2	novel	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.75	3	1	3	1	y	0.50	1	1	1	1	n	-	-	-	-	-	-	ENSMUSG00000031353.14	Rbbp7	chrX	protein_coding	retinoblastoma binding protein 7, chromatin remodeling factor
novel_NIR_21052	chrX	161745239	161747058	-	161745236	161747058	A3SS	ENSMUST00000038769.3	novel	0.33	2	4	2	4	y	-	-	-	-	-	-	0.43	3	4	3	4	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040808.5	S100g	chrX	protein_coding	S100 calcium binding protein G
novel_NIR_21053	chrX	161755461	161758179	+	161752128	161758179	A5SS	ENSMUST00000112300.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031360.15	Ctps2	chrX	protein_coding	cytidine 5'-triphosphate synthase 2
novel_NIR_21054	chrX	162700839	162711022	+	162700839	162703902	A3SS&ES	ENSMUST00000140845.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.43	3	4	3	4	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000031367.16	Ap1s2	chrX	protein_coding	adaptor-related protein complex 1, sigma 2 subunit
novel_NIR_21055	chrX	162700839	162711022	+	162700839	162709899	A3SS	ENSMUST00000112294.9	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.75	3	1	3	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.60	3	2	3	2	y	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.40	2	3	2	3	y	ENSMUSG00000031367.16	Ap1s2	chrX	protein_coding	adaptor-related protein complex 1, sigma 2 subunit
novel_NIR_21056	chrX	162700839	162711022	+	162700839	162714359	A3SS	ENSMUST00000069041.15	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000031367.16	Ap1s2	chrX	protein_coding	adaptor-related protein complex 1, sigma 2 subunit
novel_NIR_21057	chrX	162700839	162711022	+	162700839	162715129	A3SS	ENSMUST00000033734.14	novel	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.38	3	5	3	5	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.30	3	7	3	7	y	0.00	0	6	0	6	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.40	2	3	2	3	y	ENSMUSG00000031367.16	Ap1s2	chrX	protein_coding	adaptor-related protein complex 1, sigma 2 subunit
novel_NIR_21058	chrX	162726309	162728289	-	162726309	162732256	A5SS	ENSMUST00000112289.9	novel	0.50	5	5	5	5	y	0.22	2	7	2	7	n	0.00	0	7	0	7	n	0.00	0	12	0	12	n	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.13	2	13	2	13	n	0.43	3	4	3	4	y	0.06	1	16	1	16	n	0.08	1	11	1	11	n	0.00	0	9	0	9	n	0.18	2	9	2	9	y	ENSMUSG00000031370.13	Zrsr2	chrX	protein_coding	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2
novel_NIR_21059	chrX	162741474	162741584	-	162741415	162741584	A3SS	ENSMUST00000127370.3	novel	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.40	2	3	2	3	y	0.17	1	5	1	5	n	ENSMUSG00000031370.13	Zrsr2	chrX	protein_coding	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2
novel_NIR_21060	chrX	163052673	163063125	+	163052673	163054599	3pMXE	ENSMUST00000127685.2	novel	0.15	7	41	7	41	y	0.14	6	36	6	36	n	0.05	2	36	2	36	n	0.05	3	52	3	52	n	0.06	5	83	5	83	n	0.00	0	33	0	33	n	0.10	7	63	7	63	n	0.26	7	20	7	20	y	0.19	13	55	13	55	y	0.08	6	70	6	70	n	0.00	0	40	0	40	n	0.17	21	102	21	102	y	ENSMUSG00000031379.14	Pir	chrX	protein_coding	pirin
novel_NIR_21061	chrX	163052673	163063125	+	163052673;163054727	163054599;163063125	ES	ENSMUST00000033749.9	novel	0.13	7	47.0	7	41;53	n	0.14	6	37.5	6	36;39	n	0.05	2	40.0	2	36;44	n	0.06	3	45.5	3	52;39	n	0.05	5	88.5	5	83;94	n	0.00	0	33.0	0	33;33	n	0.09	7	69.5	7	63;76	n	0.23	7	23.5	7	20;27	y	0.21	13	49.5	13	55;44	y	0.08	6	66.5	6	70;63	n	0.00	0	48.5	0	40;57	n	0.17	21	101.0	21	102;100	y	ENSMUSG00000031379.14	Pir	chrX	protein_coding	pirin
novel_NIR_21062	chrX	163052673	163063125	+	163054727	163063125	A5SS&ES	ENSMUST00000145412.8	novel	0.12	7	53	7	53	n	0.13	6	39	6	39	n	0.04	2	44	2	44	n	0.07	3	39	3	39	n	0.05	5	94	5	94	n	0.00	0	33	0	33	n	0.08	7	76	7	76	n	0.21	7	27	7	27	y	0.23	13	44	13	44	y	0.09	6	63	6	63	n	0.00	0	57	0	57	n	0.17	21	100	21	100	y	ENSMUSG00000031379.14	Pir	chrX	protein_coding	pirin
novel_NIR_21063	chrX	163202930	163205580	+	163202836	163205580	A5SS	ENSMUST00000208741.2	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.27	3	8	3	8	y	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000031381.17	Piga	chrX	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class A
novel_NIR_21064	chrX	163202930	163205580	+	163202964	163205580	A5SS	ENSMUST00000112255.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031381.17	Piga	chrX	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class A
novel_NIR_21065	chrX	163720295	163722639	-	163720299	163722639	A3SS	ENSMUST00000112247.9	novel	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.20	1	4	1	4	n	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.25	2	6	2	6	y	0.00	0	8	0	8	n	0.00	0	6	0	6	n	ENSMUSG00000061778.11	Mospd2	chrX	protein_coding	motile sperm domain containing 2
novel_NIR_21066	chrX	163778418	163778883	+	163778418	163778975	A3SS	ENSMUST00000057150.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000047757.18	Fancb	chrX	protein_coding	Fanconi anemia, complementation group B
novel_NIR_21067	chrX	163778418	163778883	+	163778767	163778883	A5SS	ENSMUST00000167446.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.75	3	1	3	1	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000047757.18	Fancb	chrX	protein_coding	Fanconi anemia, complementation group B
novel_NIR_21068	chrX	165198091	165209816	-	165198091;165208078	165207972;165209816	ES	ENSMUST00000049501.9	novel	0.00	0	2.0	0	4;0	n	0.00	0	2.5	0	0;5	n	0.00	0	12.0	0	11;13	n	0.00	0	6.5	0	6;7	n	0.22	2	7.0	2	6;8	y	0.00	0	2.5	0	2;3	n	0.00	0	8.0	0	12;4	n	0.00	0	3.5	0	3;4	n	0.00	0	4.5	0	8;1	n	0.12	1	7.0	1	10;4	n	0.00	0	1.0	0	2;0	n	0.25	1	3.0	1	3;3	n	ENSMUSG00000040586.9	Ofd1	chrX	protein_coding	OFD1, centriole and centriolar satellite protein
novel_NIR_21069	chrX	165241132	165245311	-	165242005	165245311	A3SS&ES	ENSMUST00000049435.15	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000079316.11	Rab9	chrX	protein_coding	RAB9, member RAS oncogene family
novel_NIR_21070	chrX	165241204	165245311	-	165242005	165245311	A3SS&ES	ENSMUST00000049435.15	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000079316.11	Rab9	chrX	protein_coding	RAB9, member RAS oncogene family
novel_NIR_21071	chrX	165245338	165258790	-	165245338	165248090	A5SS&ES	ENSMUST00000049435.15	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.17	1	5	1	5	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000079316.11	Rab9	chrX	protein_coding	RAB9, member RAS oncogene family
novel_NIR_21072	chrX	165245338	165258790	-	165245338	165258277	5pMXE	ENSMUST00000149315.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000079316.11	Rab9	chrX	protein_coding	RAB9, member RAS oncogene family
novel_NIR_21073	chrX	165245338	165262415	-	165245338	165248090	A5SS&ES	ENSMUST00000049435.15	novel	0.33	1	2	1	2	n	0.50	1	1	1	1	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.67	2	1	2	1	y	0.50	1	1	1	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000079316.11	Rab9	chrX	protein_coding	RAB9, member RAS oncogene family
novel_NIR_21074	chrX	165245338	165262415	-	165245338	165258277	5pMXE	ENSMUST00000149315.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000079316.11	Rab9	chrX	protein_coding	RAB9, member RAS oncogene family
novel_NIR_21075	chrX	165259717	165262536	-	165248118	165262536	A3SS	ENSMUST00000049435.15	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.40	2	3	2	3	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000079316.11	Rab9	chrX	protein_coding	RAB9, member RAS oncogene family
novel_NIR_21076	chrX	165991047	165992009	-	165991047	165991319	5pMXE	ENSMUST00000112175.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	1	0	1	0	n	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	5	0	5	0	y	1.00	2	0	2	0	y	ENSMUSG00000049775.17	Tmsb4x	chrX	protein_coding	thymosin, beta 4, X chromosome
novel_NIR_21077	chrX	165991047	165992009	-	165991047	165992004	A5SS	ENSMUST00000112176.8	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	1	0	1	0	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	0.71	5	2	5	2	y	1.00	2	0	2	0	y	ENSMUSG00000049775.17	Tmsb4x	chrX	protein_coding	thymosin, beta 4, X chromosome
novel_NIR_21078	chrX	166148213	166156990	-	166148213	166156999	A5SS	ENSMUST00000026839.5	novel	0.00	0	8	0	8	n	0.40	4	6	4	6	y	0.00	0	6	0	6	n	0.05	1	20	1	20	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.27	3	8	3	8	y	0.17	1	5	1	5	n	0.23	3	10	3	10	y	0.11	5	40	5	40	n	0.18	2	9	2	9	y	0.18	4	18	4	18	y	ENSMUSG00000025742.6	Prps2	chrX	protein_coding	phosphoribosyl pyrophosphate synthetase 2
novel_NIR_21079	chrX	16637258	16681490	-	16637258;16673955	16673774;16681490	ES	ENSMUST00000173143.2	novel	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	0.67	1	0.5	1	1;0	n	0.83	5	1.0	5	2;0	y	0.57	2	1.5	2	3;0	y	0.00	0	2.0	0	4;0	n	0.00	0	0.5	0	1;0	n	0.00	0	1.0	0	2;0	n	1.00	3	0.0	3	0;0	y	0.67	4	2.0	4	4;0	y	0.75	3	1.0	3	1;1	y	0.75	6	2.0	6	4;0	y	ENSMUSG00000040147.15	Maob	chrX	protein_coding	monoamine oxidase B
novel_NIR_21080	chrX	16673955	16683469	-	16673955;16681685	16681490;16683469	ES	ENSMUST00000173143.2	novel	0.40	1	1.5	1	0;3	n	1.00	1	0.0	1	0;0	n	0.00	0	0.5	0	0;1	n	0.83	5	1.0	5	0;2	y	-	-	-	-	-	-	-	-	-	-	-	-	0.67	1	0.5	1	0;1	n	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	0.89	4	0.5	4	0;1	y	0.00	0	0.5	0	1;0	n	1.00	2	0.0	2	0;0	y	ENSMUSG00000040147.15	Maob	chrX	protein_coding	monoamine oxidase B
novel_NIR_21081	chrX	16681588	16683469	-	16681685	16683469	A3SS	ENSMUST00000173143.2	novel	0.40	2	3	2	3	y	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.33	1	2	1	2	n	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	1.00	3	0	3	0	y	1.00	4	0	4	0	y	ENSMUSG00000040147.15	Maob	chrX	protein_coding	monoamine oxidase B
novel_NIR_21082	chrX	16681666	16683469	-	16681685	16683469	A3SS	ENSMUST00000173143.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000040147.15	Maob	chrX	protein_coding	monoamine oxidase B
novel_NIR_21083	chrX	167452611	167453231	-	167452611	167453216	A5SS	ENSMUST00000033725.16	novel	0.05	3	53	3	53	n	0.18	7	32	7	32	y	0.01	1	85	1	85	n	0.09	8	77	8	77	n	0.08	9	99	9	99	n	0.07	3	39	3	39	n	0.02	2	112	2	112	n	0.00	0	51	0	51	n	0.14	8	48	8	48	n	0.01	1	85	1	85	n	0.04	2	44	2	44	n	0.10	9	85	9	85	n	ENSMUSG00000031358.18	Msl3	chrX	protein_coding	MSL complex subunit 3
novel_NIR_21084	chrX	167452611	167454139	-	167452611;167453307	167453216;167454139	ES	ENSMUST00000033725.16	novel	0.16	9	47.5	9	53;42	y	0.13	5	33.0	5	32;34	n	0.00	0	76.5	0	85;68	n	0.06	5	76.0	5	77;75	n	0.09	8	86.0	8	99;73	n	0.11	4	32.5	4	39;26	n	0.03	3	91.0	3	112;70	n	0.04	2	46.5	2	51;42	n	0.06	3	46.0	3	48;44	n	0.12	11	78.0	11	85;71	n	0.17	10	49.0	10	44;54	y	0.09	8	80.5	8	85;76	n	ENSMUSG00000031358.18	Msl3	chrX	protein_coding	MSL complex subunit 3
novel_NIR_21085	chrX	167453304	167454139	-	167453307	167454139	A3SS	ENSMUST00000033725.16	novel	0.21	11	42	11	42	y	0.17	7	34	7	34	y	0.14	11	68	11	68	n	0.18	16	75	16	75	y	0.26	25	73	25	73	y	0.21	7	26	7	26	y	0.28	27	70	27	70	y	0.00	0	42	0	42	n	0.15	8	44	8	44	y	0.22	20	71	20	71	y	0.10	6	54	6	54	n	0.25	26	76	26	76	y	ENSMUSG00000031358.18	Msl3	chrX	protein_coding	MSL complex subunit 3
novel_NIR_21086	chrX	167454886	167457257	-	167454886	167455259	5pMXE	ENSMUST00000129860.2	novel	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	13	0	13	n	0.00	0	24	0	24	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.18	2	9	2	9	y	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	22	0	22	n	ENSMUSG00000031358.18	Msl3	chrX	protein_coding	MSL complex subunit 3
novel_NIR_21087	chrX	167823007	167829531	-	167823007	167836254	A5SS	ENSMUST00000136779.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000087201.2	Gm15261	chrX	lncRNA	predicted gene 15261
novel_NIR_21088	chrX	167896218	167897188	+	167896218	168003194	A3SS	ENSMUST00000112127.2	novel	0.00	0	1	0	1	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.33	7	14	7	14	y	ENSMUSG00000031355.17	Arhgap6	chrX	protein_coding	Rho GTPase activating protein 6
novel_NIR_21089	chrX	168749154	168764881	+	168749154;168760025	168759918;168764881	ES	ENSMUST00000112107.8	novel	0.00	0	1.0	0	2;0	n	0.00	0	4.5	0	6;3	n	0.00	0	15.5	0	23;8	n	0.31	2	4.5	2	8;1	y	0.00	0	9.5	0	14;5	n	0.00	0	8.5	0	12;5	n	0.00	0	7.5	0	12;3	n	0.00	0	13.5	0	23;4	n	0.00	0	3.5	0	4;3	n	0.00	0	6.0	0	10;2	n	-	-	-	-	-	-	0.00	0	5.5	0	7;4	n	ENSMUSG00000035299.17	Mid1	chrX	protein_coding	midline 1
novel_NIR_21090	chrX	168749154	168764881	+	168762534	168764881	5pMXE	ENSMUST00000079443.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035299.17	Mid1	chrX	protein_coding	midline 1
novel_NIR_21091	chrX	168762995	168763412	-	168762995	168767935	A5SS	ENSMUST00000144738.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000087263.2	Gm15726	chrX	lncRNA	predicted gene 15726
novel_NIR_21092	chrX	168762995	168766285	-	168762995	168767935	A5SS	ENSMUST00000144738.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	7	0	7	0	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000087263.2	Gm15726	chrX	lncRNA	predicted gene 15726
novel_NIR_21093	chrX	168766717	168766952	+	168765029	168766952	A5SS	ENSMUST00000112107.8	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	0.24	4	13	4	13	y	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.11	2	16	2	16	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000035299.17	Mid1	chrX	protein_coding	midline 1
novel_NIR_21094	chrX	168766717	168766952	+	168765537	168766952	A5SS	ENSMUST00000151722.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.80	4	1	4	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035299.17	Mid1	chrX	protein_coding	midline 1
novel_NIR_21095	chrX	168767079	168767906	+	168767079	168767995	A3SS	ENSMUST00000112107.8	novel	0.00	0	6	0	6	n	0.04	1	23	1	23	n	0.19	7	30	7	30	y	0.17	1	5	1	5	n	0.10	4	36	4	36	n	0.12	5	38	5	38	n	0.10	2	19	2	19	n	0.12	3	22	3	22	n	0.00	0	7	0	7	n	0.12	1	7	1	7	n	0.17	1	5	1	5	n	0.00	0	8	0	8	n	ENSMUSG00000035299.17	Mid1	chrX	protein_coding	midline 1
novel_NIR_21096	chrX	168768138	168768279	+	168768138	168768893	A3SS	ENSMUST00000112107.8	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.22	2	7	2	7	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035299.17	Mid1	chrX	protein_coding	midline 1
novel_NIR_21097	chrX	168793017	168793670	+	168792902	168793670	A5SS	ENSMUST00000180251.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000095562.9	Erdr1	chrX	lncRNA	erythroid differentiation regulator 1
novel_NIR_21098	chrX	168793098	168793670	+	168792902	168793670	A5SS	ENSMUST00000180251.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000095562.9	Erdr1	chrX	lncRNA	erythroid differentiation regulator 1
novel_NIR_21099	chrX	168793799	168801670	+	168794059	168801670	A5SS	ENSMUST00000238681.2	novel	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.33	1	2	1	2	n	0.00	0	12	0	12	n	0.44	4	5	4	5	y	0.00	0	11	0	11	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	ENSMUSG00000095562.9	Erdr1	chrX	lncRNA	erythroid differentiation regulator 1
novel_NIR_21100	chrX	168794059	168801769	+	168794059	168801670	A3SS	ENSMUST00000238681.2	novel	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.22	2	7	2	7	y	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	ENSMUSG00000095562.9	Erdr1	chrX	lncRNA	erythroid differentiation regulator 1
novel_NIR_21101	chrX	168794059	168801769	+	168794059	168801699	A3SS	ENSMUST00000238482.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000095562.9	Erdr1	chrX	lncRNA	erythroid differentiation regulator 1
novel_NIR_21102	chrX	168801558	168801670	+	168794059	168801670	A5SS	ENSMUST00000238681.2	novel	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.42	5	7	5	7	y	0.00	0	2	0	2	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.44	4	5	4	5	y	0.00	0	4	0	4	n	ENSMUSG00000095562.9	Erdr1	chrX	lncRNA	erythroid differentiation regulator 1
novel_NIR_21103	chrX	17386574	17434272	-	17424250	17434272	3pMXE	ENSMUST00000176638.8	novel	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	0.88	7	1	7	1	y	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	ENSMUSG00000025040.14	Fundc1	chrX	protein_coding	FUN14 domain containing 1
novel_NIR_21104	chrX	18108067	18112436	+	18108067;18112303	18112205;18112436	ES	ENSMUST00000044484.13	novel	0.00	0	6.0	0	8;4	n	0.20	1	4.0	1	4;4	n	0.00	0	14.0	0	14;14	n	0.00	0	4.5	0	2;7	n	0.16	3	15.5	3	19;12	y	0.00	0	9.0	0	10;8	n	0.00	0	9.5	0	10;9	n	0.00	0	8.5	0	9;8	n	0.10	1	9.5	1	7;12	n	0.50	5	5.0	5	8;2	y	0.00	0	5.0	0	6;4	n	0.00	0	11.0	0	15;7	n	ENSMUSG00000037369.18	Kdm6a	chrX	protein_coding	lysine (K)-specific demethylase 6A
novel_NIR_21105	chrX	18108067	18112436	+	18112303	18112436	5pMXE	ENSMUST00000224255.2	novel	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.00	0	14	0	14	n	0.00	0	7	0	7	n	0.20	3	12	3	12	y	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.08	1	12	1	12	n	0.71	5	2	5	2	y	0.00	0	4	0	4	n	0.00	0	7	0	7	n	ENSMUSG00000037369.18	Kdm6a	chrX	protein_coding	lysine (K)-specific demethylase 6A
novel_NIR_21106	chrX	20486353	20501972	+	20486353	20501970	A3SS	ENSMUST00000115375.8	novel	0.04	1	23	1	23	n	0.00	0	16	0	16	n	0.00	0	31	0	31	n	0.00	0	27	0	27	n	0.15	5	28	5	28	y	0.00	0	22	0	22	n	0.00	0	37	0	37	n	0.00	0	26	0	26	n	0.00	0	22	0	22	n	0.04	1	27	1	27	n	0.08	1	11	1	11	n	0.00	0	21	0	21	n	ENSMUSG00000031060.17	Rbm10	chrX	protein_coding	RNA binding motif protein 10
novel_NIR_21107	chrX	20664120	20699589	+	20664120	20716166	A3SS	ENSMUST00000136451.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	ENSMUSG00000001127.13	Araf	chrX	protein_coding	Araf proto-oncogene, serine/threonine kinase
novel_NIR_21108	chrX	20714858	20714964	+	20714858	20715351	A3SS	ENSMUST00000122850.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000001127.13	Araf	chrX	protein_coding	Araf proto-oncogene, serine/threonine kinase
novel_NIR_21109	chrX	20714858	20715908	+	20714858	20715351	A3SS&ES	ENSMUST00000122850.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000001127.13	Araf	chrX	protein_coding	Araf proto-oncogene, serine/threonine kinase
novel_NIR_21110	chrX	20715395	20715962	+	20715395	20716166	A3SS	ENSMUST00000122850.2	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	11	0	11	n	0.29	2	5	2	5	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000001127.13	Araf	chrX	protein_coding	Araf proto-oncogene, serine/threonine kinase
novel_NIR_21111	chrX	20720354	20720499	+	20720354	20720501	A3SS	ENSMUST00000148032.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	0.67	4	2	4	2	y	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000001127.13	Araf	chrX	protein_coding	Araf proto-oncogene, serine/threonine kinase
novel_NIR_21112	chrX	20720354	20720499	+	20720354	20723650	A3SS	ENSMUST00000136451.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000001127.13	Araf	chrX	protein_coding	Araf proto-oncogene, serine/threonine kinase
novel_NIR_21113	chrX	20720354	20723855	+	20720354	20720501	3pMXE	ENSMUST00000148032.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000001127.13	Araf	chrX	protein_coding	Araf proto-oncogene, serine/threonine kinase
novel_NIR_21114	chrX	20720354	20723855	+	20720354	20723650	A3SS&ES	ENSMUST00000136451.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000001127.13	Araf	chrX	protein_coding	Araf proto-oncogene, serine/threonine kinase
novel_NIR_21115	chrX	20724751	20724985	+	20724751	20725005	A3SS	ENSMUST00000128250.3	novel	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.33	2	4	2	4	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	7	0	7	n	ENSMUSG00000001127.13	Araf	chrX	protein_coding	Araf proto-oncogene, serine/threonine kinase
novel_NIR_21116	chrX	20724751	20725022	+	20724751	20725005	A3SS	ENSMUST00000128250.3	novel	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.12	1	7	1	7	n	ENSMUSG00000001127.13	Araf	chrX	protein_coding	Araf proto-oncogene, serine/threonine kinase
novel_NIR_21117	chrX	20808036	20825597	-	20808036	20816679	5pMXE	ENSMUST00000009550.14	novel	0.14	1	6	1	6	n	0.00	0	9	0	9	n	0.07	1	14	1	14	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.00	0	5	0	5	n	0.29	2	5	2	5	y	0.33	2	4	2	4	y	0.00	0	8	0	8	n	0.00	0	11	0	11	n	ENSMUSG00000009406.14	Elk1	chrX	protein_coding	ELK1, member of ETS oncogene family
novel_NIR_21118	chrX	20808036;20825699	20825597;20825974	-	20808036	20825974	cassetteExon	ENSMUST00000129899.8	novel	1.00	0.5	0	1;0	0	n	1.00	0.5	0	0;1	0	n	1.00	0.5	0	1;0	0	n	-	-	-	-	-	-	1.00	1.0	0	0;2	0	n	-	-	-	-	-	-	1.00	1.0	0	0;2	0	n	-	-	-	-	-	-	1.00	1.5	0	2;1	0	n	1.00	2.0	0	2;2	0	y	1.00	0.5	0	0;1	0	n	1.00	1.5	0	0;3	0	n	ENSMUSG00000001134.10	Uxt	chrX	protein_coding	ubiquitously expressed prefoldin like chaperone
novel_NIR_21119	chrX	20818510	20825974	-	20808036	20825974	A3SS	ENSMUST00000129899.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	4	0	4	0	y	1.00	5	0	5	0	y	ENSMUSG00000001134.10	Uxt	chrX	protein_coding	ubiquitously expressed prefoldin like chaperone
novel_NIR_21120	chrX	20825699	20825974	-	20808036	20825974	A3SS	ENSMUST00000129899.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	ENSMUSG00000001134.10	Uxt	chrX	protein_coding	ubiquitously expressed prefoldin like chaperone
novel_NIR_21121	chrX	20826258	20827111	-	20826258	20827874	A5SS	ENSMUST00000001162.10	novel	0.00	0	3	0	3	n	0.56	5	4	5	4	y	0.25	3	9	3	9	y	0.00	0	6	0	6	n	0.29	2	5	2	5	y	0.00	0	3	0	3	n	0.40	4	6	4	6	y	0.50	2	2	2	2	y	0.12	1	7	1	7	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.08	1	11	1	11	n	ENSMUSG00000001134.10	Uxt	chrX	protein_coding	ubiquitously expressed prefoldin like chaperone
novel_NIR_21122	chrX	20826258	20827961	-	20826258	20827874	A5SS	ENSMUST00000001162.10	novel	0.50	3	3	3	3	y	0.00	0	4	0	4	n	0.40	6	9	6	9	y	0.25	2	6	2	6	y	0.50	5	5	5	5	y	0.00	0	3	0	3	n	0.14	1	6	1	6	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.18	2	9	2	9	y	0.31	5	11	5	11	y	0.21	3	11	3	11	y	ENSMUSG00000001134.10	Uxt	chrX	protein_coding	ubiquitously expressed prefoldin like chaperone
novel_NIR_21123	chrX	20828834	20833968	+	20828896	20833968	A5SS	ENSMUST00000123462.8	novel	0.09	2	20	2	20	n	0.50	4	4	4	4	y	0.00	0	4	0	4	n	0.11	2	16	2	16	n	0.31	5	11	5	11	y	0.20	1	4	1	4	n	0.14	3	19	3	19	n	0.00	0	17	0	17	n	0.08	1	11	1	11	n	0.00	0	18	0	18	n	0.36	4	7	4	7	y	0.20	3	12	3	12	y	ENSMUSG00000086877.8	A230072C01Rik	chrX	lncRNA	RIKEN cDNA A230072C01 gene
novel_NIR_21124	chrX	20902752	20902867	-	20902710	20902867	A3SS	ENSMUST00000115333.9	novel	0.00	0	3	0	3	n	0.22	2	7	2	7	y	0.12	1	7	1	7	n	0.25	1	3	1	3	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.14	1	6	1	6	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.20	1	4	1	4	n	0.60	3	2	3	2	y	0.06	1	16	1	16	n	ENSMUSG00000054737.12	Zfp182	chrX	protein_coding	zinc finger protein 182
novel_NIR_21125	chrX	20903011	20906778	-	20903011	20926742	A5SS	ENSMUST00000115333.9	novel	0.71	5	2	5	2	y	0.33	1	2	1	2	n	0.67	4	2	4	2	y	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.33	1	2	1	2	n	0.29	2	5	2	5	y	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.12	1	7	1	7	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	ENSMUSG00000054737.12	Zfp182	chrX	protein_coding	zinc finger protein 182
novel_NIR_21126	chrX	23227823	23231012	-	23227823	23231195	A5SS	ENSMUST00000115313.8	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.00	0	6	0	6	n	ENSMUSG00000036782.14	Klhl13	chrX	protein_coding	kelch-like 13
novel_NIR_21127	chrX	23559508	23559591	+	23559508	23559664	A3SS	ENSMUST00000101670.3	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	ENSMUSG00000036769.15	Wdr44	chrX	protein_coding	WD repeat domain 44
novel_NIR_21128	chrX	36078983	36116292	-	36087822	36116292	3pMXE	ENSMUST00000115249.10	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000006423.16	C330007P06Rik	chrX	protein_coding	RIKEN cDNA C330007P06 gene
novel_NIR_21129	chrX	36078983	36116292	-	36104270	36116292	3pMXE	ENSMUST00000127966.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000006423.16	C330007P06Rik	chrX	protein_coding	RIKEN cDNA C330007P06 gene
novel_NIR_21130	chrX	36091895	36116292	-	36087822	36116292	A3SS	ENSMUST00000115249.10	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000006423.16	C330007P06Rik	chrX	protein_coding	RIKEN cDNA C330007P06 gene
novel_NIR_21131	chrX	36091895	36116292	-	36104270	36116292	3pMXE	ENSMUST00000127966.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000006423.16	C330007P06Rik	chrX	protein_coding	RIKEN cDNA C330007P06 gene
novel_NIR_21132	chrX	36102931	36116292	-	36087822	36116292	A3SS	ENSMUST00000115249.10	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000006423.16	C330007P06Rik	chrX	protein_coding	RIKEN cDNA C330007P06 gene
novel_NIR_21133	chrX	36102931	36116292	-	36104270	36116292	3pMXE	ENSMUST00000127966.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000006423.16	C330007P06Rik	chrX	protein_coding	RIKEN cDNA C330007P06 gene
novel_NIR_21134	chrX	36347785	36348778	-	36348669	36348778	3pMXE	ENSMUST00000131149.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000079641.4	Rpl39	chrX	protein_coding	ribosomal protein L39
novel_NIR_21135	chrX	36360671	36361313	-	36360671	36362719	A5SS	ENSMUST00000130324.2	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.15	2	11	2	11	y	0.00	0	4	0	4	n	0.00	0	10	0	10	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.20	1	4	1	4	n	0.00	0	3	0	3	n	ENSMUSG00000036572.17	Upf3b	chrX	protein_coding	UPF3 regulator of nonsense transcripts homolog B (yeast)
novel_NIR_21136	chrX	37494279	37513144	-	37491158	37513144	A3SS	ENSMUST00000074913.12	novel	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.58	19	14	19	14	y	0.78	38	11	38	11	y	0.00	0	7	0	7	n	0.51	23	22	23	22	y	0.00	0	11	0	11	n	0.68	34	16	34	16	y	0.55	16	13	16	13	y	0.69	33	15	33	15	y	0.00	0	21	0	21	n	ENSMUSG00000016534.16	Lamp2	chrX	protein_coding	lysosomal-associated membrane protein 2
novel_NIR_21137	chrX	37496575	37513144	-	37491158	37513144	A3SS	ENSMUST00000074913.12	novel	0.00	0	12	0	12	n	0.07	1	14	1	14	n	0.11	1	8	1	8	n	0.12	2	14	2	14	n	0.21	3	11	3	11	y	0.22	2	7	2	7	y	0.00	0	22	0	22	n	0.21	3	11	3	11	y	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.12	2	15	2	15	n	0.00	0	21	0	21	n	ENSMUSG00000016534.16	Lamp2	chrX	protein_coding	lysosomal-associated membrane protein 2
novel_NIR_21138	chrX	37500181	37513144	-	37491158	37513144	A3SS	ENSMUST00000074913.12	novel	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.11	1	8	1	8	n	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.12	1	7	1	7	n	0.00	0	22	0	22	n	0.00	0	11	0	11	n	0.16	3	16	3	16	y	0.07	1	13	1	13	n	0.00	0	15	0	15	n	0.05	1	21	1	21	n	ENSMUSG00000016534.16	Lamp2	chrX	protein_coding	lysosomal-associated membrane protein 2
novel_NIR_21139	chrX	37510622	37513144	-	37491158	37513144	A3SS	ENSMUST00000074913.12	novel	0.00	0	12	0	12	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	0.61	17	11	17	11	y	0.00	0	7	0	7	n	0.00	0	22	0	22	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.00	0	15	0	15	n	0.00	0	21	0	21	n	ENSMUSG00000016534.16	Lamp2	chrX	protein_coding	lysosomal-associated membrane protein 2
novel_NIR_21140	chrX	37529202	37545126	-	37544233	37545126	3pMXE	ENSMUST00000144663.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	3	6	3	6	y	-	-	-	-	-	-	-	-	-	-	-	-	0.67	4	2	4	2	y	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000016534.16	Lamp2	chrX	protein_coding	lysosomal-associated membrane protein 2
novel_NIR_21141	chrX	37661355	37675689	-	37661355	37664957	5pMXE	ENSMUST00000050083.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000031095.16	Cul4b	chrX	protein_coding	cullin 4B
novel_NIR_21142	chrX	37661355	37675689	-	37661355	37665016	5pMXE	ENSMUST00000115118.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000031095.16	Cul4b	chrX	protein_coding	cullin 4B
novel_NIR_21143	chrX	37689655	37690229	+	37689655	37691453	A3SS	ENSMUST00000140204.8	novel	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.12	1	7	1	7	n	0.50	3	3	3	3	y	1.00	3	0	3	0	n	0.60	3	2	3	2	y	0.14	1	6	1	6	n	0.50	2	2	2	2	y	0.50	3	3	3	3	y	0.67	2	1	2	1	n	ENSMUSG00000000355.14	Mcts1	chrX	protein_coding	malignant T cell amplified sequence 1
novel_NIR_21144	chrX	37689655	37694816	+	37689655;37691550	37691453;37694816	ES	ENSMUST00000140204.8	novel	0.00	0	63.5	0	0;127	n	0.02	1	58.0	1	2;114	n	0.09	6	64.5	6	3;126	n	0.01	1	68.5	1	3;134	n	0.01	1	78.0	1	7;149	n	0.00	0	40.0	0	3;77	n	0.05	4	69.5	4	0;139	n	0.15	5	29.0	5	2;56	y	0.09	5	52.5	5	6;99	n	0.07	6	83.0	6	2;164	n	0.01	1	67.5	1	3;132	n	0.01	1	73.0	1	1;145	n	ENSMUSG00000000355.14	Mcts1	chrX	protein_coding	malignant T cell amplified sequence 1
novel_NIR_21145	chrX	37697745	37698749	+	37697745	37700632	A3SS	ENSMUST00000133128.8	novel	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.27	4	11	4	11	y	0.18	2	9	2	9	n	0.00	0	8	0	8	n	0.08	1	12	1	12	n	0.00	0	9	0	9	n	0.23	3	10	3	10	y	ENSMUSG00000000355.14	Mcts1	chrX	protein_coding	malignant T cell amplified sequence 1
novel_NIR_21146	chrX	37698854	37699004	+	37698854	37700632	A3SS	ENSMUST00000148938.2	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	1.00	5	0	5	0	y	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.62	5	3	5	3	y	0.25	1	3	1	3	n	0.25	1	3	1	3	n	ENSMUSG00000000355.14	Mcts1	chrX	protein_coding	malignant T cell amplified sequence 1
novel_NIR_21147	chrX	40891873	40892333	-	40891863	40892333	A3SS	ENSMUST00000145586.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	ENSMUSG00000037475.16	Thoc2	chrX	protein_coding	THO complex 2
novel_NIR_21148	chrX	40901371	40902014	-	40901371	40902107	A5SS	ENSMUST00000134084.2	novel	0.25	1	3	1	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	5	0	5	n	0.60	6	4	6	4	y	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	ENSMUSG00000037475.16	Thoc2	chrX	protein_coding	THO complex 2
novel_NIR_21149	chrX	40901371	40902014	-	40901371	40902294	A5SS	ENSMUST00000151430.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	6	0	6	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000037475.16	Thoc2	chrX	protein_coding	THO complex 2
novel_NIR_21150	chrX	40901371	40902014	-	40901371	40902827	A5SS	ENSMUST00000047037.15	novel	0.06	1	16	1	16	n	0.00	0	15	0	15	n	0.00	0	15	0	15	n	0.00	0	19	0	19	n	0.40	6	9	6	9	y	0.00	0	12	0	12	n	0.09	1	10	1	10	n	0.08	1	11	1	11	n	0.13	2	13	2	13	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.04	1	26	1	26	n	ENSMUSG00000037475.16	Thoc2	chrX	protein_coding	THO complex 2
novel_NIR_21151	chrX	41148909	41149300	+	41148909	41155558	A3SS	ENSMUST00000225851.2	novel	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.33	1	2	1	2	n	0.20	1	4	1	4	n	0.22	2	7	2	7	y	0.12	1	7	1	7	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	ENSMUSG00000025860.16	Xiap	chrX	protein_coding	X-linked inhibitor of apoptosis
novel_NIR_21152	chrX	41157359	41180907	+	41157359	41160119	3pMXE	ENSMUST00000141316.8	novel	0.00	0	14	0	14	n	0.00	0	2	0	2	n	0.15	2	11	2	11	y	0.00	0	7	0	7	n	0.15	2	11	2	11	y	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.29	2	5	2	5	y	0.00	0	12	0	12	n	0.00	0	9	0	9	n	0.07	1	13	1	13	n	0.17	3	15	3	15	y	ENSMUSG00000025860.16	Xiap	chrX	protein_coding	X-linked inhibitor of apoptosis
novel_NIR_21153	chrX	41157359	41180907	+	41157359	41183249	A3SS	ENSMUST00000126375.2	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.33	2	4	2	4	y	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.33	3	6	3	6	y	ENSMUSG00000025860.16	Xiap	chrX	protein_coding	X-linked inhibitor of apoptosis
novel_NIR_21154	chrX	41160380	41180907	+	41160380	41161351	3pMXE	ENSMUST00000146874.3	novel	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.50	2	2	2	2	y	0.00	0	7	0	7	n	-	-	-	-	-	-	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	ENSMUSG00000025860.16	Xiap	chrX	protein_coding	X-linked inhibitor of apoptosis
novel_NIR_21155	chrX	41181052	41183244	+	41157749	41183244	A5SS	ENSMUST00000115095.9	novel	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.33	1	2	1	2	n	0.20	2	8	2	8	y	0.50	3	3	3	3	y	0.00	0	8	0	8	n	0.33	2	4	2	4	y	0.33	2	4	2	4	y	0.00	0	4	0	4	n	0.25	2	6	2	6	y	0.00	0	12	0	12	n	ENSMUSG00000025860.16	Xiap	chrX	protein_coding	X-linked inhibitor of apoptosis
novel_NIR_21156	chrX	41181052	41183244	+	41160380	41183244	A5SS	ENSMUST00000055483.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.12	1	7	1	7	n	1.00	2	0	2	0	y	0.75	3	1	3	1	y	0.00	0	5	0	5	n	0.29	2	5	2	5	y	0.29	2	5	2	5	y	0.00	0	4	0	4	n	0.67	2	1	2	1	y	-	-	-	-	-	-	ENSMUSG00000025860.16	Xiap	chrX	protein_coding	X-linked inhibitor of apoptosis
novel_NIR_21157	chrX	47037237	47049330	+	47037237	47045087	3pMXE	ENSMUST00000115020.8	novel	0.57	4	3	4	3	y	0.00	0	6	0	6	n	0.33	2	4	2	4	y	0.11	1	8	1	8	n	0.25	1	3	1	3	n	0.17	1	5	1	5	n	0.60	6	4	6	4	y	1.00	1	0	1	0	n	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.17	1	5	1	5	n	0.17	2	10	2	10	y	ENSMUSG00000001173.16	Ocrl	chrX	protein_coding	OCRL, inositol polyphosphate-5-phosphatase
novel_NIR_21158	chrX	47037237	47049330	+	47037237;47045110	47045087;47049330	ES	ENSMUST00000001202.15	novel	0.62	4	2.5	4	3;2	y	0.00	0	6.0	0	6;6	n	0.44	2	2.5	2	4;1	y	0.10	1	9.0	1	8;10	n	0.25	1	3.0	1	3;3	n	0.20	1	4.0	1	5;3	n	0.71	6	2.5	6	4;1	y	1.00	1	0.0	1	0;0	n	0.25	1	3.0	1	3;3	n	0.00	0	6.0	0	6;6	n	0.17	1	5.0	1	5;5	n	0.17	2	9.5	2	10;9	y	ENSMUSG00000001173.16	Ocrl	chrX	protein_coding	OCRL, inositol polyphosphate-5-phosphatase
novel_NIR_21159	chrX	47295745	47297357	-	47296796	47297357	A3SS&ES	ENSMUST00000149416.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.40	2	3	2	3	y	ENSMUSG00000036985.13	Zdhhc9	chrX	protein_coding	zinc finger, DHHC domain containing 9
novel_NIR_21160	chrX	47295834	47296605	-	47295834	47296400	A5SS	ENSMUST00000149416.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	ENSMUSG00000036985.13	Zdhhc9	chrX	protein_coding	zinc finger, DHHC domain containing 9
novel_NIR_21161	chrX	47295834	47296605	-	47295834	47297000	A5SS	ENSMUST00000132652.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000036985.13	Zdhhc9	chrX	protein_coding	zinc finger, DHHC domain containing 9
novel_NIR_21162	chrX	47295834	47296605	-	47295834	47297715	A5SS	ENSMUST00000088935.4	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	ENSMUSG00000036985.13	Zdhhc9	chrX	protein_coding	zinc finger, DHHC domain containing 9
novel_NIR_21163	chrX	47295834	47297377	-	47295834	47296400	A5SS&ES	ENSMUST00000149416.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	ENSMUSG00000036985.13	Zdhhc9	chrX	protein_coding	zinc finger, DHHC domain containing 9
novel_NIR_21164	chrX	47295834	47297377	-	47295834	47297000	5pMXE	ENSMUST00000132652.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	ENSMUSG00000036985.13	Zdhhc9	chrX	protein_coding	zinc finger, DHHC domain containing 9
novel_NIR_21165	chrX	47295834	47297377	-	47295834	47297715	A5SS	ENSMUST00000088935.4	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.38	3	5	3	5	y	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	ENSMUSG00000036985.13	Zdhhc9	chrX	protein_coding	zinc finger, DHHC domain containing 9
novel_NIR_21166	chrX	47682471	47683241	-	47680638	47683241	A3SS	ENSMUST00000072292.12	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	ENSMUSG00000036916.14	Zfp280c	chrX	protein_coding	zinc finger protein 280C
novel_NIR_21167	chrX	47682471	47683241	-	47682475	47683241	A3SS	ENSMUST00000149058.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000036916.14	Zfp280c	chrX	protein_coding	zinc finger protein 280C
novel_NIR_21168	chrX	47712705	47714473	+	47712705	47712839	A3SS&ES	ENSMUST00000128773.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000031105.17	Slc25a14	chrX	protein_coding	solute carrier family 25 (mitochondrial carrier, brain), member 14
novel_NIR_21169	chrX	47712705	47714473	+	47712705	47718129	A3SS	ENSMUST00000153047.8	novel	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.17	1	5	1	5	n	0.40	2	3	2	3	y	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.56	5	4	5	4	y	0.67	2	1	2	1	y	-	-	-	-	-	-	ENSMUSG00000031105.17	Slc25a14	chrX	protein_coding	solute carrier family 25 (mitochondrial carrier, brain), member 14
novel_NIR_21170	chrX	47712705	47714473	+	47712705;47713074	47712839;47714473	ES	ENSMUST00000134257.8	novel	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	0.67	1	0.5	1	1;0	n	0.00	0	0.5	0	0;1	n	0.67	1	0.5	1	1;0	n	0.80	2	0.5	2	0;1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0.0	5	0;0	y	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	ENSMUSG00000031105.17	Slc25a14	chrX	protein_coding	solute carrier family 25 (mitochondrial carrier, brain), member 14
novel_NIR_21171	chrX	47712705	47714473	+	47712705;47713083	47712839;47714473	ES	ENSMUST00000134757.8	novel	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	0.67	1	0.5	1	1;0	n	-	-	-	-	-	-	0.67	1	0.5	1	1;0	n	1.00	2	0.0	2	0;0	y	0.00	0	0.5	0	0;1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0.0	5	0;0	y	1.00	2	0.0	2	0;0	y	-	-	-	-	-	-	ENSMUSG00000031105.17	Slc25a14	chrX	protein_coding	solute carrier family 25 (mitochondrial carrier, brain), member 14
novel_NIR_21172	chrX	47712705	47717013	+	47712705	47712839	A3SS&ES	ENSMUST00000128773.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031105.17	Slc25a14	chrX	protein_coding	solute carrier family 25 (mitochondrial carrier, brain), member 14
novel_NIR_21173	chrX	47712705	47717013	+	47712705	47718129	A3SS	ENSMUST00000153047.8	novel	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000031105.17	Slc25a14	chrX	protein_coding	solute carrier family 25 (mitochondrial carrier, brain), member 14
novel_NIR_21174	chrX	48107768	48111971	-	48107771	48111971	A3SS	ENSMUST00000167659.8	novel	0.00	0	15	0	15	n	0.11	2	16	2	16	n	0.25	4	12	4	12	y	0.00	0	11	0	11	n	0.12	3	21	3	21	n	0.00	0	7	0	7	n	0.00	0	32	0	32	n	0.15	2	11	2	11	y	0.00	0	15	0	15	n	0.00	0	32	0	32	n	0.00	0	23	0	23	n	0.04	1	22	1	22	n	ENSMUSG00000031109.17	Enox2	chrX	protein_coding	ecto-NOX disulfide-thiol exchanger 2
novel_NIR_21175	chrX	48107768	48112004	-	48107771	48112004	A3SS	ENSMUST00000114911.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.33	2	4	2	4	y	-	-	-	-	-	-	0.60	3	2	3	2	y	0.00	0	1	0	1	n	ENSMUSG00000031109.17	Enox2	chrX	protein_coding	ecto-NOX disulfide-thiol exchanger 2
novel_NIR_21176	chrX	48169628	48257509	-	48169628	48257518	A5SS	ENSMUST00000114914.8	novel	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.25	3	9	3	9	y	0.15	2	11	2	11	y	0.14	2	12	2	12	n	0.14	2	12	2	12	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	ENSMUSG00000031109.17	Enox2	chrX	protein_coding	ecto-NOX disulfide-thiol exchanger 2
novel_NIR_21177	chrX	48169628	48257509	-	48169628	48375722	A5SS	ENSMUST00000155770.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	3	3	3	3	y	0.40	2	3	2	3	y	0.67	2	1	2	1	y	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000031109.17	Enox2	chrX	protein_coding	ecto-NOX disulfide-thiol exchanger 2
novel_NIR_21178	chrX	48169628	48375733	-	48169628	48257518	A5SS&ES	ENSMUST00000114918.9	novel	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.40	2	3	2	3	y	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.06	1	16	1	16	n	0.07	1	13	1	13	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	ENSMUSG00000031109.17	Enox2	chrX	protein_coding	ecto-NOX disulfide-thiol exchanger 2
novel_NIR_21179	chrX	48169628	48375733	-	48169628	48375722	A5SS	ENSMUST00000155770.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	ENSMUSG00000031109.17	Enox2	chrX	protein_coding	ecto-NOX disulfide-thiol exchanger 2
novel_NIR_21180	chrX	48169628	48375733	-	48169628;48257661	48257518;48375733	ES	ENSMUST00000114914.8	novel	0.00	0	3.5	0	6;1	n	0.00	0	2.5	0	5;0	n	0.36	2	3.5	2	3;4	y	0.00	0	6.0	0	9;3	n	0.00	0	9.5	0	11;8	n	0.00	0	6.5	0	12;1	n	0.00	0	7.0	0	12;2	n	0.00	0	6.0	0	12;0	n	0.11	1	8.5	1	16;1	n	0.07	1	12.5	1	13;12	n	0.00	0	6.0	0	9;3	n	0.00	0	6.0	0	12;0	n	ENSMUSG00000031109.17	Enox2	chrX	protein_coding	ecto-NOX disulfide-thiol exchanger 2
novel_NIR_21181	chrX	49647261	49648379	-	49647261	49649454	A5SS	ENSMUST00000203672.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
novel_NIR_21182	chrX	49647261	49648379	-	49647261	49651557	A5SS	ENSMUST00000204729.2	novel	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.17	2	10	2	10	y	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
novel_NIR_21183	chrX	49647261	49648379	-	49647261	49653690	A5SS	ENSMUST00000124842.8	novel	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.29	2	5	2	5	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
novel_NIR_21184	chrX	49649486	49649686	-	49647261	49649686	A3SS	ENSMUST00000205059.3	novel	0.00	0	26	0	26	n	0.00	0	20	0	20	n	0.00	0	10	0	10	n	0.08	1	12	1	12	n	0.20	5	20	5	20	y	0.00	0	4	0	4	n	0.12	2	15	2	15	n	0.00	0	13	0	13	n	0.00	0	22	0	22	n	0.00	0	12	0	12	n	0.06	1	15	1	15	n	0.00	0	24	0	24	n	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
novel_NIR_21185	chrX	49650674	49651557	-	49647261	49651557	A3SS	ENSMUST00000204729.2	novel	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.18	2	9	2	9	y	0.11	1	8	1	8	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
novel_NIR_21186	chrX	49659168	49661221	-	49659168	49662101	A5SS	ENSMUST00000203933.3	novel	0.00	0	7	0	7	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.22	2	7	2	7	y	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
novel_NIR_21187	chrX	49659168	49661885	-	49659168	49661892	A5SS	ENSMUST00000204974.3	novel	0.00	0	16	0	16	n	0.00	0	14	0	14	n	0.00	0	31	0	31	n	0.00	0	31	0	31	n	0.08	3	35	3	35	n	0.18	2	9	2	9	y	0.06	2	29	2	29	n	0.00	0	25	0	25	n	0.00	0	24	0	24	n	0.03	1	29	1	29	n	0.00	0	26	0	26	n	0.05	2	35	2	35	n	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
novel_NIR_21188	chrX	49659168;49662021	49661885;49662101	-	49659168	49662101	cassetteExon	ENSMUST00000203933.3	novel	0.42	5.0	7	0;10	7	n	0.33	5.0	10	0;10	10	n	0.28	5.0	13	0;10	13	n	0.41	7.0	10	0;14	10	n	0.45	10.0	12	3;17	12	y	0.48	10.0	11	2;18	11	y	0.46	6.0	7	2;10	7	y	0.33	2.5	5	0;5	5	n	0.62	5.0	3	0;10	3	n	0.42	6.5	9	1;12	9	n	0.70	7.0	3	0;14	3	n	0.33	5.0	10	2;8	10	y	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
novel_NIR_21189	chrX	49659168;49662021	49661930;49662101	-	49659168	49662101	cassetteExon	ENSMUST00000203933.3	novel	0.42	5.0	7	0;10	7	n	0.33	5.0	10	0;10	10	n	0.28	5.0	13	0;10	13	n	0.41	7.0	10	0;14	10	n	0.41	8.5	12	0;17	12	n	0.45	9.0	11	0;18	11	n	0.42	5.0	7	0;10	7	n	0.33	2.5	5	0;5	5	n	0.62	5.0	3	0;10	3	n	0.44	7.0	9	2;12	9	y	0.70	7.0	3	0;14	3	n	0.29	4.0	10	0;8	10	n	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
novel_NIR_21190	chrX	49662021	49662101	-	49659168	49662101	A3SS	ENSMUST00000203933.3	novel	0.59	10	7	10	7	y	0.50	10	10	10	10	y	0.43	10	13	10	13	y	0.58	14	10	14	10	y	0.59	17	12	17	12	n	0.62	18	11	18	11	n	0.59	10	7	10	7	n	0.50	5	5	5	5	y	0.77	10	3	10	3	y	0.57	12	9	12	9	n	0.82	14	3	14	3	y	0.44	8	10	8	10	n	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
novel_NIR_21191	chrX	49662021	49662101	-	49662018	49662101	A3SS	ENSMUST00000204974.3	novel	0.77	10	3	10	3	y	0.56	10	8	10	8	y	0.83	10	2	10	2	y	0.78	14	4	14	4	y	0.77	17	5	17	5	y	0.86	18	3	18	3	y	0.91	10	1	10	1	y	0.50	5	5	5	5	y	0.83	10	2	10	2	y	0.80	12	3	12	3	y	0.70	14	6	14	6	y	0.62	8	5	8	5	y	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
novel_NIR_21192	chrX	49666901	49669216	-	49666901	49669690	A5SS	ENSMUST00000204974.3	novel	0.69	11	5	11	5	y	0.65	17	9	17	9	y	0.50	7	7	7	7	y	0.59	10	7	10	7	y	0.57	20	15	20	15	y	0.61	11	7	11	7	y	0.69	20	9	20	9	y	0.72	13	5	13	5	y	0.83	24	5	24	5	y	0.74	26	9	26	9	y	0.71	15	6	15	6	y	0.71	17	7	17	7	y	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
novel_NIR_21193	chrX	49666901;49669297	49669216;49669458	-	49666901	49669458	cassetteExon	ENSMUST00000203933.3	novel	0.23	8.5	29	11;6	29	y	0.28	11.0	29	17;5	29	y	0.18	5.0	23	7;3	23	y	0.32	9.0	19	10;8	19	y	0.36	15.5	27	20;11	27	y	0.29	8.0	20	11;5	20	y	0.40	12.5	19	20;5	19	y	0.46	9.5	11	13;6	11	y	0.48	20.5	22	24;17	22	y	0.46	16.5	19	26;7	19	y	0.33	12.0	24	15;9	24	y	0.34	14.5	28	17;12	28	y	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
novel_NIR_21194	chrX	49680962	49683754	-	49680962	49684338	A5SS	ENSMUST00000203933.3	novel	0.18	4	18	4	18	y	0.13	4	27	4	27	n	0.03	1	29	1	29	n	0.10	4	38	4	38	n	0.25	11	33	11	33	y	0.06	2	30	2	30	n	0.03	1	31	1	31	n	0.12	4	29	4	29	n	0.13	4	27	4	27	n	0.13	5	33	5	33	n	0.03	1	33	1	33	n	0.00	0	42	0	42	n	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
novel_NIR_21195	chrX	49689775	49692248	-	49689775	49692316	A5SS	ENSMUST00000203933.3	novel	0.05	1	20	1	20	n	0.17	1	5	1	5	n	0.36	8	14	8	14	y	0.10	2	19	2	19	n	0.32	7	15	7	15	y	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.05	1	18	1	18	n	0.00	0	11	0	11	n	0.10	3	26	3	26	n	0.06	1	16	1	16	n	0.00	0	13	0	13	n	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
novel_NIR_21196	chrX	49689775;49691481	49691400;49692316	-	49689775	49692316	cassetteExon	ENSMUST00000203933.3	novel	0.15	3.5	20	4;3	20	y	0.23	1.5	5	2;1	5	n	0.03	0.5	14	0;1	14	n	0.00	0.0	19	0;0	19	n	0.06	1.0	15	0;2	15	n	0.22	2.5	9	3;2	9	y	0.04	0.5	12	0;1	12	n	0.00	0.0	18	0;0	18	n	0.12	1.5	11	0;3	11	n	0.07	2.0	26	0;4	26	n	0.03	0.5	16	1;0	16	n	0.07	1.0	13	0;2	13	n	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
novel_NIR_21197	chrX	49689775;49691795	49691400;49692316	-	49689775	49692316	cassetteExon	ENSMUST00000203933.3	novel	0.15	3.5	20	4;3	20	y	0.29	2.0	5	2;2	5	y	0.00	0.0	14	0;0	14	n	0.00	0.0	19	0;0	19	n	0.06	1.0	15	0;2	15	n	0.18	2.0	9	3;1	9	n	0.11	1.5	12	0;3	12	n	0.00	0.0	18	0;0	18	n	0.12	1.5	11	0;3	11	n	0.00	0.0	26	0;0	26	n	0.06	1.0	16	1;1	16	n	0.19	3.0	13	0;6	13	n	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
novel_NIR_21198	chrX	49689775;49691795	49691711;49692316	-	49689775	49692316	cassetteExon	ENSMUST00000203933.3	novel	0.13	3.0	20	3;3	20	n	0.17	1.0	5	0;2	5	n	0.00	0.0	14	0;0	14	n	0.03	0.5	19	1;0	19	n	0.09	1.5	15	1;2	15	n	0.14	1.5	9	2;1	9	n	0.17	2.5	12	2;3	12	y	0.03	0.5	18	1;0	18	n	0.21	3.0	11	3;3	11	y	0.04	1.0	26	2;0	26	n	0.03	0.5	16	0;1	16	n	0.28	5.0	13	4;6	13	y	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
novel_NIR_21199	chrX	49691481	49692316	-	49689775	49692316	A3SS	ENSMUST00000203933.3	novel	0.13	3	20	3	20	n	0.17	1	5	1	5	n	0.07	1	14	1	14	n	0.00	0	19	0	19	n	0.12	2	15	2	15	n	0.18	2	9	2	9	n	0.08	1	12	1	12	n	0.00	0	18	0	18	n	0.21	3	11	3	11	y	0.13	4	26	4	26	n	0.00	0	16	0	16	n	0.13	2	13	2	13	n	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
novel_NIR_21200	chrX	49692402	49694885	-	49692402	49697355	A5SS	ENSMUST00000203933.3	novel	0.11	2	17	2	17	n	0.00	0	6	0	6	n	0.00	0	30	0	30	n	0.00	0	15	0	15	n	0.12	2	15	2	15	n	0.00	0	8	0	8	n	0.00	0	24	0	24	n	0.00	0	20	0	20	n	0.19	4	17	4	17	y	0.19	7	30	7	30	n	0.00	0	14	0	14	n	0.00	0	27	0	27	n	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
novel_NIR_21201	chrX	49692402	49694953	-	49692402	49697355	A5SS	ENSMUST00000203933.3	novel	0.43	13	17	13	17	y	0.00	0	6	0	6	n	0.03	1	30	1	30	n	0.00	0	15	0	15	n	0.00	0	15	0	15	n	0.00	0	8	0	8	n	0.08	2	24	2	24	n	0.05	1	20	1	20	n	0.00	0	17	0	17	n	0.00	0	30	0	30	n	0.18	3	14	3	14	y	0.13	4	27	4	27	n	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
novel_NIR_21202	chrX	49695039	49697355	-	49692402	49697355	A3SS	ENSMUST00000203933.3	novel	0.00	0	17	0	17	n	0.33	3	6	3	6	y	0.00	0	30	0	30	n	0.00	0	15	0	15	n	0.06	1	15	1	15	n	0.27	3	8	3	8	n	0.00	0	24	0	24	n	0.00	0	20	0	20	n	0.00	0	17	0	17	n	0.09	3	30	3	30	n	0.00	0	14	0	14	n	0.07	2	27	2	27	n	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
novel_NIR_21203	chrX	49695981	49697355	-	49692402	49697355	A3SS	ENSMUST00000203933.3	novel	0.00	0	17	0	17	n	0.00	0	6	0	6	n	0.03	1	30	1	30	n	0.00	0	15	0	15	n	0.17	3	15	3	15	y	0.20	2	8	2	8	y	0.11	3	24	3	24	n	0.13	3	20	3	20	n	0.00	0	17	0	17	n	0.00	0	30	0	30	n	0.00	0	14	0	14	n	0.00	0	27	0	27	n	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
novel_NIR_21204	chrX	49697484	49697564	-	49697481	49697564	A3SS	ENSMUST00000203933.3	novel	0.78	7	2	7	2	y	0.67	4	2	4	2	y	0.80	8	2	8	2	y	0.56	5	4	5	4	y	0.43	3	4	3	4	y	1.00	5	0	5	0	y	0.92	12	1	12	1	y	0.67	6	3	6	3	y	0.75	6	2	6	2	y	0.80	8	2	8	2	y	0.33	3	6	3	6	y	0.86	25	4	25	4	y	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
novel_NIR_21205	chrX	49697691	49700982	-	49697691	49701582	A5SS	ENSMUST00000203933.3	novel	0.45	14	17	14	17	n	0.26	8	23	8	23	n	0.36	9	16	9	16	n	0.15	4	22	4	22	y	0.32	19	40	19	40	n	0.38	12	20	12	20	n	0.36	14	25	14	25	n	0.39	12	19	12	19	n	0.22	8	28	8	28	n	0.21	4	15	4	15	n	0.23	6	20	6	20	n	0.32	10	21	10	21	n	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
novel_NIR_21206	chrX	49697691;49701118	49700982;49701582	-	49697691	49701582	cassetteExon	ENSMUST00000203933.3	novel	0.48	15.5	17	14;17	17	y	0.28	9.0	23	8;10	23	y	0.36	9.0	16	9;9	16	y	0.08	2.0	22	4;0	22	n	0.27	15.0	40	19;11	40	y	0.27	7.5	20	12;3	20	y	0.34	13.0	25	14;12	25	y	0.41	13.0	19	12;14	19	y	0.18	6.0	28	8;4	28	y	0.38	9.0	15	4;14	15	y	0.25	6.5	20	6;7	20	y	0.39	13.5	21	10;17	21	y	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
novel_NIR_21207	chrX	49704392	49712192	-	49704392	49709552	A5SS&ES	ENSMUST00000148530.3	novel	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.35	6	11	6	11	y	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.20	2	8	2	8	n	0.00	0	14	0	14	n	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
novel_NIR_21208	chrX	49704392	49712192	-	49704392	49715314	A5SS	ENSMUST00000124842.8	novel	0.00	0	31	0	31	n	0.00	0	27	0	27	n	0.00	0	14	0	14	n	0.00	0	23	0	23	n	0.17	6	29	6	29	y	0.00	0	29	0	29	n	0.00	0	27	0	27	n	0.00	0	33	0	33	n	0.00	0	24	0	24	n	0.00	0	32	0	32	n	0.06	2	30	2	30	n	0.00	0	35	0	35	n	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
novel_NIR_21209	chrX	49704392	49712959	-	49704392	49709552	A5SS&ES	ENSMUST00000148530.3	novel	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.20	2	8	2	8	y	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	14	0	14	n	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
novel_NIR_21210	chrX	49709679	49715314	-	49709681	49715314	A3SS	ENSMUST00000148530.3	novel	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.25	2	6	2	6	y	0.00	0	10	0	10	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
novel_NIR_21211	chrX	49709681	49712192	-	49709681	49715314	A5SS	ENSMUST00000148530.3	novel	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.17	2	10	2	10	y	0.00	0	2	0	2	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	13	0	13	n	0.00	0	7	0	7	n	0.00	0	8	0	8	n	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
novel_NIR_21212	chrX	49712266	49715314	-	49709681	49715314	A3SS	ENSMUST00000148530.3	novel	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.50	2	2	2	2	y	0.00	0	9	0	9	n	0.14	1	6	1	6	n	0.23	3	10	3	10	y	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	13	0	13	n	0.12	1	7	1	7	n	0.11	1	8	1	8	n	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
novel_NIR_21213	chrX	49719872;49720407	49720300;49723822	-	49719872	49723822	cassetteExon	ENSMUST00000124842.8	novel	0.03	1.0	31	0;2	31	n	0.00	0.0	33	0;0	33	n	0.03	1.5	54	0;3	54	n	0.00	0.0	48	0;0	48	n	0.03	1.5	55	0;3	55	n	0.16	4.5	23	3;6	23	y	0.13	5.5	37	4;7	37	n	0.09	3.0	31	0;6	31	n	0.04	1.5	39	3;0	39	n	0.00	0.0	52	0;0	52	n	0.01	0.5	38	0;1	38	n	0.05	2.0	37	4;0	37	n	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
novel_NIR_21214	chrX	49720407	49723822	-	49719872	49723822	A3SS	ENSMUST00000124842.8	novel	0.06	2	31	2	31	n	0.00	0	33	0	33	n	0.05	3	54	3	54	n	0.00	0	48	0	48	n	0.05	3	55	3	55	n	0.21	6	23	6	23	n	0.16	7	37	7	37	n	0.16	6	31	6	31	y	0.00	0	39	0	39	n	0.00	0	52	0	52	n	0.03	1	38	1	38	n	0.00	0	37	0	37	n	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
novel_NIR_21215	chrX	51180677	51233065	-	51180677	51253493	A5SS	ENSMUST00000033450.3	novel	0.02	2	103	2	103	n	0.08	5	54	5	54	n	0.24	58	186	58	186	y	0.09	13	125	13	125	n	0.18	33	151	33	151	y	0.23	25	85	25	85	y	0.13	18	117	18	117	n	0.15	21	118	21	118	y	0.08	6	70	6	70	n	0.12	14	106	14	106	n	0.10	7	61	7	61	n	0.06	7	119	7	119	n	ENSMUSG00000031119.5	Gpc4	chrX	protein_coding	glypican 4
novel_NIR_21216	chrX	52434866	52444533	-	52434866	52436581	A5SS&ES	ENSMUST00000023836.4	novel	0.05	1	21	1	21	n	0.16	3	16	3	16	y	0.05	2	39	2	39	n	0.05	2	37	2	37	n	0.03	1	32	1	32	n	0.08	1	11	1	11	n	0.04	2	45	2	45	n	0.07	1	14	1	14	n	0.00	0	18	0	18	n	0.14	5	30	5	30	n	0.00	0	19	0	19	n	0.06	2	34	2	34	n	ENSMUSG00000023074.12	Mospd1	chrX	protein_coding	motile sperm domain containing 1
novel_NIR_21217	chrX	52434866	52444533	-	52434866;52436742	52436581;52444533	ES	ENSMUST00000152743.8	novel	0.05	1	18.5	1	21;16	n	0.15	3	16.5	3	16;17	y	0.06	2	33.0	2	39;27	n	0.06	2	32.0	2	37;27	n	0.03	1	30.0	1	32;28	n	0.09	1	10.0	1	11;9	n	0.05	2	41.5	2	45;38	n	0.05	1	19.0	1	14;24	n	0.00	0	17.5	0	18;17	n	0.16	5	26.0	5	30;22	y	0.00	0	14.5	0	19;10	n	0.06	2	33.0	2	34;32	n	ENSMUSG00000023074.12	Mospd1	chrX	protein_coding	motile sperm domain containing 1
novel_NIR_21218	chrX	52436742	52440548	-	52436742	52444530	A5SS	ENSMUST00000023836.4	novel	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000023074.12	Mospd1	chrX	protein_coding	motile sperm domain containing 1
novel_NIR_21219	chrX	52436742;52440670	52440548;52444533	-	52436742	52444533	cassetteExon	ENSMUST00000152743.8	novel	0.18	3.5	16	2;5	16	y	0.15	3.0	17	2;4	17	y	0.07	2.0	27	1;3	27	n	0.00	0.0	27	0;0	27	n	0.05	1.5	28	3;0	28	n	0.28	3.5	9	3;4	9	y	0.05	2.0	38	3;1	38	n	0.02	0.5	24	0;1	24	n	0.11	2.0	17	3;1	17	n	0.00	0.0	22	0;0	22	n	0.05	0.5	10	0;1	10	n	0.02	0.5	32	1;0	32	n	ENSMUSG00000023074.12	Mospd1	chrX	protein_coding	motile sperm domain containing 1
novel_NIR_21220	chrX	55550276	55551733	+	55550459	55551733	A5SS	ENSMUST00000134138.2	novel	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.12	1	7	1	7	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.25	2	6	2	6	y	ENSMUSG00000035967.16	Ints6l	chrX	protein_coding	integrator complex subunit 6 like
novel_NIR_21221	chrX	55634663	55640750	-	55634663;55636541	55636438;55640750	ES	ENSMUST00000059899.3	novel	0.24	4	12.5	4	12;13	y	0.19	3	12.5	3	12;13	y	0.00	0	30.5	0	28;33	n	0.00	0	33.0	0	37;29	n	0.13	4	27.0	4	27;27	n	0.00	0	18.0	0	25;11	n	0.11	2	16.5	2	23;10	n	0.00	0	21.5	0	19;24	n	0.06	1	15.0	1	21;9	n	0.25	7	20.5	7	23;18	y	0.00	0	12.0	0	12;12	n	0.28	8	20.5	8	29;12	y	ENSMUSG00000061273.4	Mmgt1	chrX	protein_coding	membrane magnesium transporter 1
novel_NIR_21222	chrX	56102014	56104250	+	56102014	56102251	3pMXE	ENSMUST00000114751.9	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.18	2	9	2	9	y	0.00	0	3	0	3	n	ENSMUSG00000067873.12	Htatsf1	chrX	protein_coding	HIV TAT specific factor 1
novel_NIR_21223	chrX	56430581	56431501	-	56430581	56433421	A5SS	ENSMUST00000140384.8	novel	0.00	0	19	0	19	n	0.08	1	12	1	12	n	0.25	3	9	3	9	y	0.00	0	19	0	19	n	0.05	1	18	1	18	n	0.00	0	16	0	16	n	0.08	1	12	1	12	n	0.00	0	10	0	10	n	0.05	1	19	1	19	n	0.07	1	14	1	14	n	0.00	0	14	0	14	n	0.00	0	19	0	19	n	ENSMUSG00000031134.17	Rbmx	chrX	protein_coding	RNA binding motif protein, X chromosome
novel_NIR_21224	chrX	59281797	59281917	-	59271153	59281917	A3SS	ENSMUST00000033480.13	novel	0.08	7	81	7	81	n	0.09	8	80	8	80	n	0.11	2	16	2	16	n	0.13	14	91	14	91	n	0.15	16	90	16	90	n	0.19	4	17	4	17	y	0.20	15	59	15	59	n	0.14	6	37	6	37	n	0.08	5	60	5	60	n	0.07	8	115	8	115	n	0.06	3	48	3	48	n	0.09	9	92	9	92	n	ENSMUSG00000062949.14	Atp11c	chrX	protein_coding	ATPase, class VI, type 11C
novel_NIR_21225	chrX	59366913	59394146	-	59366913	59636136	A5SS	ENSMUST00000154051.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000062949.14	Atp11c	chrX	protein_coding	ATPase, class VI, type 11C
novel_NIR_21226	chrX	59366913	59448593	-	59366913	59636136	A5SS	ENSMUST00000154051.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000062949.14	Atp11c	chrX	protein_coding	ATPase, class VI, type 11C
novel_NIR_21227	chrX	67754385	67755873	+	67754385	67755837	A3SS	ENSMUST00000088546.12	novel	0.00	0	11	0	11	n	0.75	9	3	9	3	y	0.22	4	14	4	14	y	0.08	1	11	1	11	n	0.17	2	10	2	10	y	0.14	1	6	1	6	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.19	3	13	3	13	y	0.10	2	18	2	18	n	0.36	8	14	8	14	y	0.23	5	17	5	17	y	ENSMUSG00000000838.18	Fmr1	chrX	protein_coding	FMRP translational regulator 1
novel_NIR_21228	chrX	67754385	67755873	+	67754385	67755912	A3SS	ENSMUST00000114654.8	novel	0.00	0	3	0	3	n	0.75	9	3	9	3	y	0.33	4	8	4	8	y	0.25	1	3	1	3	n	0.33	2	4	2	4	y	0.25	1	3	1	3	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.75	3	1	3	1	y	0.17	2	10	2	10	y	0.73	8	3	8	3	y	0.31	5	11	5	11	y	ENSMUSG00000000838.18	Fmr1	chrX	protein_coding	FMRP translational regulator 1
novel_NIR_21229	chrX	69508688	69510760	-	69506627	69510760	A3SS	ENSMUST00000101506.10	novel	0.25	1	3	1	3	n	-	-	-	-	-	-	0.45	5	6	5	6	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.10	1	9	1	9	n	0.33	3	6	3	6	y	ENSMUSG00000073139.10	Tmem185a	chrX	protein_coding	transmembrane protein 185A
novel_NIR_21230	chrX	70346220	70357252	+	70346220	70351306	3pMXE	ENSMUST00000156452.8	novel	0.10	2	18	2	18	n	0.08	1	12	1	12	n	0.00	0	29	0	29	n	0.09	2	21	2	21	n	0.17	4	19	4	19	y	0.00	0	20	0	20	n	0.00	0	15	0	15	n	0.00	0	15	0	15	n	0.21	3	11	3	11	y	0.14	4	24	4	24	n	0.00	0	16	0	16	n	0.05	1	20	1	20	n	ENSMUSG00000031337.17	Mtm1	chrX	protein_coding	X-linked myotubular myopathy gene 1
novel_NIR_21231	chrX	70346220	70357252	+	70346220;70351482	70351306;70357252	ES	ENSMUST00000171933.8	novel	0.11	2	17.0	2	18;16	n	0.08	1	11.5	1	12;11	n	0.00	0	26.5	0	29;24	n	0.09	2	20.0	2	21;19	n	0.15	4	22.5	4	19;26	y	0.00	0	19.0	0	20;18	n	0.00	0	20.5	0	15;26	n	0.00	0	16.0	0	15;17	n	0.25	3	9.0	3	11;7	y	0.15	4	22.5	4	24;21	y	0.00	0	15.0	0	16;14	n	0.06	1	15.0	1	20;10	n	ENSMUSG00000031337.17	Mtm1	chrX	protein_coding	X-linked myotubular myopathy gene 1
novel_NIR_21232	chrX	70860544	70863674	+	70860305	70863674	A5SS	ENSMUST00000114577.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000073131.13	Vma21	chrX	protein_coding	VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)
novel_NIR_21233	chrX	70860544	70863674	+	70860673	70863674	A5SS	ENSMUST00000114575.4	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000073131.13	Vma21	chrX	protein_coding	VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)
novel_NIR_21234	chrX	70860544	70863674	+	70861313	70863674	A5SS&ES	ENSMUST00000138979.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000073131.13	Vma21	chrX	protein_coding	VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)
novel_NIR_21235	chrX	72125673	72125965	-	72125673	72125989	A5SS	ENSMUST00000078775.13	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.75	3	1	3	1	y	-	-	-	-	-	-	ENSMUSG00000079845.9	Xlr4a	chrX	protein_coding	X-linked lymphocyte-regulated 4A
novel_NIR_21236	chrX	72137858	72138402	-	72137858	72138430	A5SS	ENSMUST00000173742.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.92	11	1	11	1	y	-	-	-	-	-	-	ENSMUSG00000057836.13	Xlr3a	chrX	protein_coding	X-linked lymphocyte-regulated 3A
novel_NIR_21237	chrX	72137858	72138402	-	72137858	72138552	A5SS	ENSMUST00000114524.9	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.92	11	1	11	1	y	-	-	-	-	-	-	ENSMUSG00000057836.13	Xlr3a	chrX	protein_coding	X-linked lymphocyte-regulated 3A
novel_NIR_21238	chrX	72137858	72138402	-	72137858	72138567	A5SS	ENSMUST00000074619.6	novel	0.14	1	6	1	6	n	0.11	1	8	1	8	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	11	0	11	n	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.10	1	9	1	9	n	0.30	11	26	11	26	y	0.00	0	7	0	7	n	ENSMUSG00000057836.13	Xlr3a	chrX	protein_coding	X-linked lymphocyte-regulated 3A
novel_NIR_21239	chrX	72137858	72138402	-	72137858	72140587	A5SS	ENSMUST00000173473.8	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	11	0	11	0	y	-	-	-	-	-	-	ENSMUSG00000057836.13	Xlr3a	chrX	protein_coding	X-linked lymphocyte-regulated 3A
novel_NIR_21240	chrX	72241076	72241215	+	72241076	72241892	A3SS	ENSMUST00000101486.5	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.33	1	2	1	2	n	-	-	-	-	-	-	ENSMUSG00000073125.11	Xlr3b	chrX	protein_coding	X-linked lymphocyte-regulated 3B
novel_NIR_21241	chrX	72241731	72241892	+	72241076	72241892	A5SS	ENSMUST00000101486.5	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	4	2	4	2	y	-	-	-	-	-	-	ENSMUSG00000073125.11	Xlr3b	chrX	protein_coding	X-linked lymphocyte-regulated 3B
novel_NIR_21242	chrX	72491956	72496605	-	72490743	72496605	A3SS	ENSMUST00000077243.5	novel	0.00	0	8	0	8	n	0.33	2	4	2	4	y	0.20	2	8	2	8	y	0.00	0	4	0	4	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.06	1	15	1	15	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	ENSMUSG00000031371.15	Haus7	chrX	protein_coding	HAUS augmin-like complex, subunit 7
novel_NIR_21243	chrX	72721059	72722472	+	72721059;72722376	72722242;72722472	ES	ENSMUST00000033752.14	novel	0.00	0	7.0	0	6;8	n	0.00	0	10.0	0	9;11	n	0.00	0	32.5	0	27;38	n	0.30	3	7.0	3	4;10	y	0.06	1	15.5	1	15;16	n	0.00	0	11.0	0	6;16	n	0.00	0	40.5	0	28;53	n	0.00	0	14.0	0	11;17	n	0.00	0	7.0	0	6;8	n	0.00	0	11.5	0	16;7	n	0.09	1	10.0	1	4;16	n	0.00	0	17.5	0	15;20	n	ENSMUSG00000019558.15	Slc6a8	chrX	protein_coding	solute carrier family 6 (neurotransmitter transporter, creatine), member 8
novel_NIR_21244	chrX	72721059	72722472	+	72722376	72722472	5pMXE	ENSMUST00000170614.8	novel	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.00	0	38	0	38	n	0.23	3	10	3	10	y	0.06	1	16	1	16	n	0.00	0	16	0	16	n	0.00	0	53	0	53	n	0.00	0	17	0	17	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.06	1	16	1	16	n	0.00	0	20	0	20	n	ENSMUSG00000019558.15	Slc6a8	chrX	protein_coding	solute carrier family 6 (neurotransmitter transporter, creatine), member 8
novel_NIR_21245	chrX	72944342	72954769	-	72944342	72947854	A5SS&ES	ENSMUST00000128329.2	novel	0.00	0	9	0	9	n	0.29	2	5	2	5	y	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.17	1	5	1	5	n	0.00	0	6	0	6	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.00	0	11	0	11	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	ENSMUSG00000031389.18	Arhgap4	chrX	protein_coding	Rho GTPase activating protein 4
novel_NIR_21246	chrX	73057731	73058947	-	73057731	73059012	A5SS	ENSMUST00000068286.12	novel	1.00	2	0	2	0	y	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.33	2	4	2	4	y	0.43	3	4	3	4	y	0.00	0	7	0	7	n	0.00	0	10	0	10	n	ENSMUSG00000031392.19	Irak1	chrX	protein_coding	interleukin-1 receptor-associated kinase 1
novel_NIR_21247	chrX	73057731	73058947	-	73057731	73060154	A5SS	ENSMUST00000114360.10	novel	0.67	2	1	2	1	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.40	2	3	2	3	y	0.43	3	4	3	4	y	0.00	0	4	0	4	n	-	-	-	-	-	-	ENSMUSG00000031392.19	Irak1	chrX	protein_coding	interleukin-1 receptor-associated kinase 1
novel_NIR_21248	chrX	73060846	73061507	-	73061117	73061507	A3SS	ENSMUST00000033769.15	novel	0.08	1	11	1	11	n	0.00	0	5	0	5	n	0.00	0	18	0	18	n	0.00	0	8	0	8	n	0.08	1	11	1	11	n	0.00	0	7	0	7	n	0.00	0	17	0	17	n	0.00	0	17	0	17	n	0.00	0	2	0	2	n	0.21	4	15	4	15	y	0.00	0	14	0	14	n	0.00	0	9	0	9	n	ENSMUSG00000031392.19	Irak1	chrX	protein_coding	interleukin-1 receptor-associated kinase 1
novel_NIR_21249	chrX	73060846	73061736	-	73060303	73061736	A3SS	ENSMUST00000128436.8	novel	0.44	4	5	4	5	y	0.41	7	10	7	10	y	0.54	15	13	15	13	y	0.36	4	7	4	7	y	0.50	5	5	5	5	y	0.29	4	10	4	10	y	0.25	2	6	2	6	y	0.50	6	6	6	6	y	0.67	4	2	4	2	y	0.00	0	11	0	11	n	0.69	11	5	11	5	y	0.64	9	5	9	5	y	ENSMUSG00000031392.19	Irak1	chrX	protein_coding	interleukin-1 receptor-associated kinase 1
novel_NIR_21250	chrX	73060846	73061736	-	73061036	73061736	A3SS	ENSMUST00000149871.8	novel	0.25	4	12	4	12	y	0.39	7	11	7	11	y	0.68	15	7	15	7	y	0.67	4	2	4	2	y	0.23	5	17	5	17	y	0.25	4	12	4	12	y	0.13	2	13	2	13	n	0.55	6	5	6	5	y	0.27	4	11	4	11	y	0.00	0	11	0	11	n	0.58	11	8	11	8	y	0.60	9	6	9	6	y	ENSMUSG00000031392.19	Irak1	chrX	protein_coding	interleukin-1 receptor-associated kinase 1
novel_NIR_21251	chrX	73060846	73061736	-	73061623	73061736	A3SS&ES	ENSMUST00000033769.15	novel	0.22	4	14	4	14	y	0.54	7	6	7	6	y	0.52	15	14	15	14	y	0.19	4	17	4	17	y	0.31	5	11	5	11	y	0.27	4	11	4	11	y	0.08	2	22	2	22	n	0.23	6	20	6	20	y	0.29	4	10	4	10	y	0.00	0	24	0	24	n	0.58	11	8	11	8	y	0.45	9	11	9	11	y	ENSMUSG00000031392.19	Irak1	chrX	protein_coding	interleukin-1 receptor-associated kinase 1
novel_NIR_21252	chrX	73066195	73066455	-	73066267	73066455	A3SS	ENSMUST00000114352.8	novel	0.00	0	26	0	26	n	0.15	4	22	4	22	y	0.06	4	65	4	65	n	0.13	4	27	4	27	n	0.09	5	48	5	48	n	0.07	3	38	3	38	n	0.11	6	50	6	50	n	0.05	2	42	2	42	n	0.00	0	23	0	23	n	0.13	7	47	7	47	n	0.00	0	23	0	23	n	0.12	7	50	7	50	n	ENSMUSG00000031392.19	Irak1	chrX	protein_coding	interleukin-1 receptor-associated kinase 1
novel_NIR_21253	chrX	73123638	73124089	-	73123638	73129116	A5SS	ENSMUST00000100750.10	novel	0.00	0	3	0	3	n	0.25	2	6	2	6	y	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.06	1	15	1	15	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	13	0	13	n	0.00	0	8	0	8	n	0.10	1	9	1	9	n	ENSMUSG00000031393.17	Mecp2	chrX	protein_coding	methyl CpG binding protein 2
novel_NIR_21254	chrX	73123638	73124089	-	73123638	73178937	A5SS	ENSMUST00000170481.9	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000031393.17	Mecp2	chrX	protein_coding	methyl CpG binding protein 2
novel_NIR_21255	chrX	73298635	73298814	+	73298610	73298814	A5SS	ENSMUST00000152288.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000001964.15	Emd	chrX	protein_coding	emerin
novel_NIR_21256	chrX	73300530	73303603	+	73300530	73304388	A3SS	ENSMUST00000088313.5	novel	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.20	2	8	2	8	y	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	ENSMUSG00000001964.15	Emd	chrX	protein_coding	emerin
novel_NIR_21257	chrX	73314630	73315220	+	73314630	73314967	A3SS	ENSMUST00000149171.8	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	4	0	4	n	-	-	-	-	-	-	ENSMUSG00000008682.14	Rpl10	chrX	protein_coding	ribosomal protein L10
novel_NIR_21258	chrX	73314630	73315414	+	73314630	73314967	A3SS&ES	ENSMUST00000149171.8	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.96	47	2	47	2	y	0.00	0	4	0	4	n	-	-	-	-	-	-	ENSMUSG00000008682.14	Rpl10	chrX	protein_coding	ribosomal protein L10
novel_NIR_21259	chrX	73318074	73320645	-	73317297	73320645	A3SS	ENSMUST00000114189.10	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000019088.15	Dnase1l1	chrX	protein_coding	deoxyribonuclease 1-like 1
novel_NIR_21260	chrX	73318074	73320645	-	73317632	73320645	A3SS	ENSMUST00000119361.4	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.75	3	1	3	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000019088.15	Dnase1l1	chrX	protein_coding	deoxyribonuclease 1-like 1
novel_NIR_21261	chrX	73318074	73320645	-	73318074	73320085	5pMXE	ENSMUST00000128763.2	novel	0.00	0	11	0	11	n	0.12	1	7	1	7	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	18	0	18	n	0.30	3	7	3	7	y	0.05	1	21	1	21	n	0.00	0	2	0	2	n	0.00	0	13	0	13	n	0.00	0	19	0	19	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	ENSMUSG00000019088.15	Dnase1l1	chrX	protein_coding	deoxyribonuclease 1-like 1
novel_NIR_21262	chrX	73327623	73331562	+	73327623	73331628	A3SS	ENSMUST00000176453.8	novel	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.14	1	6	1	6	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.33	3	6	3	6	y	0.00	0	4	0	4	n	ENSMUSG00000009995.18	Taz	chrX	protein_coding	tafazzin
novel_NIR_21263	chrX	73327623	73331562	+	73327623	73331784	A3SS	ENSMUST00000132437.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.60	3	2	3	2	y	0.00	0	2	0	2	n	ENSMUSG00000009995.18	Taz	chrX	protein_coding	tafazzin
novel_NIR_21264	chrX	73332119	73332570	+	73332119	73332268	A3SS&ES	ENSMUST00000069722.13	novel	0.12	3	22	3	22	n	0.15	4	22	4	22	y	0.00	0	25	0	25	n	0.15	4	23	4	23	y	0.00	0	35	0	35	n	0.00	0	14	0	14	n	0.02	1	47	1	47	n	0.00	0	22	0	22	n	0.07	1	13	1	13	n	0.10	3	27	3	27	n	0.20	4	16	4	16	y	0.04	1	25	1	25	n	ENSMUSG00000009995.18	Taz	chrX	protein_coding	tafazzin
novel_NIR_21265	chrX	73332119	73332570	+	73332119	73332535	A3SS	ENSMUST00000124915.8	novel	1.00	3	0	3	0	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	ENSMUSG00000009995.18	Taz	chrX	protein_coding	tafazzin
novel_NIR_21266	chrX	73332119	73332675	+	73332119	73332535	A3SS&ES	ENSMUST00000124915.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000009995.18	Taz	chrX	protein_coding	tafazzin
novel_NIR_21267	chrX	73332119	73337834	+	73332119	73332268	3pMXE	ENSMUST00000134936.9	novel	0.12	3	22	3	22	n	0.04	1	22	1	22	n	0.00	0	25	0	25	n	0.04	1	23	1	23	n	0.00	0	35	0	35	n	0.07	1	14	1	14	n	0.04	2	47	2	47	n	0.00	0	22	0	22	n	0.07	1	13	1	13	n	0.00	0	27	0	27	n	0.16	3	16	3	16	y	0.04	1	25	1	25	n	ENSMUSG00000009995.18	Taz	chrX	protein_coding	tafazzin
novel_NIR_21268	chrX	73332320	73332592	+	73332320	73332535	A3SS	ENSMUST00000134432.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	ENSMUSG00000009995.18	Taz	chrX	protein_coding	tafazzin
novel_NIR_21269	chrX	73332320	73332592	+	73332320	73332590	A3SS	ENSMUST00000131116.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000009995.18	Taz	chrX	protein_coding	tafazzin
novel_NIR_21270	chrX	73332320	73332592	+	73332320	73332711	A3SS	ENSMUST00000069722.13	novel	0.00	0	19	0	19	n	0.00	0	20	0	20	n	0.00	0	21	0	21	n	0.00	0	22	0	22	n	0.00	0	29	0	29	n	0.18	2	9	2	9	y	0.00	0	52	0	52	n	0.00	0	19	0	19	n	0.00	0	20	0	20	n	0.00	0	30	0	30	n	0.00	0	21	0	21	n	0.00	0	21	0	21	n	ENSMUSG00000009995.18	Taz	chrX	protein_coding	tafazzin
novel_NIR_21271	chrX	73353740	73354043	+	73353740	73354086	A3SS	ENSMUST00000130581.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000015291.11	Gdi1	chrX	protein_coding	guanosine diphosphate (GDP) dissociation inhibitor 1
novel_NIR_21272	chrX	73396104	73396503	-	73396104	73396451	A5SS	ENSMUST00000114152.2	novel	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.67	2	1	2	1	y	0.33	1	2	1	2	n	0.00	0	6	0	6	n	0.20	2	8	2	8	y	0.00	0	1	0	1	n	0.00	0	11	0	11	n	0.12	1	7	1	7	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	ENSMUSG00000015289.5	Lage3	chrX	protein_coding	L antigen family, member 3
novel_NIR_21273	chrX	73396104	73397163	-	73396104	73396451	A5SS&ES	ENSMUST00000114152.2	novel	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.27	3	8	3	8	y	0.00	0	1	0	1	n	0.00	0	11	0	11	n	0.12	1	7	1	7	n	0.17	1	5	1	5	n	0.00	0	8	0	8	n	ENSMUSG00000015289.5	Lage3	chrX	protein_coding	L antigen family, member 3
novel_NIR_21274	chrX	73411192	73411759	-	73411577	73411759	3pMXE	ENSMUST00000125914.2	novel	-	-	-	-	-	-	0.50	2	2	2	2	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000015290.16	Ubl4a	chrX	protein_coding	ubiquitin-like 4A
novel_NIR_21275	chrX	73435020	73436281	-	73434103	73436281	A3SS	ENSMUST00000114139.8	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	ENSMUSG00000031399.16	Fam3a	chrX	protein_coding	family with sequence similarity 3, member A
novel_NIR_21276	chrX	73437011	73443884	+	73437011	73471368	A3SS	ENSMUST00000144947.8	novel	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.20	2	8	2	8	y	ENSMUSG00000004221.17	Ikbkg	chrX	protein_coding	inhibitor of kappaB kinase gamma
novel_NIR_21277	chrX	73437011	73443884	+	73437011	73476411	A3SS	ENSMUST00000164101.8	novel	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.67	2	1	2	1	y	ENSMUSG00000004221.17	Ikbkg	chrX	protein_coding	inhibitor of kappaB kinase gamma
novel_NIR_21278	chrX	73475272	73476411	+	73437011	73476411	A5SS	ENSMUST00000164101.8	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	ENSMUSG00000004221.17	Ikbkg	chrX	protein_coding	inhibitor of kappaB kinase gamma
novel_NIR_21279	chrX	73475272	73476411	+	73468321	73476411	A5SS	ENSMUST00000135165.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000004221.17	Ikbkg	chrX	protein_coding	inhibitor of kappaB kinase gamma
novel_NIR_21280	chrX	73475272	73476411	+	73471813	73476411	A5SS	ENSMUST00000138564.8	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	4	0	4	n	ENSMUSG00000004221.17	Ikbkg	chrX	protein_coding	inhibitor of kappaB kinase gamma
novel_NIR_21281	chrX	73475272	73476411	+	73472983	73476411	A5SS	ENSMUST00000149525.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	ENSMUSG00000004221.17	Ikbkg	chrX	protein_coding	inhibitor of kappaB kinase gamma
novel_NIR_21282	chrX	73475272	73476411	+	73473427	73476411	A5SS	ENSMUST00000114127.8	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.22	2	7	2	7	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	ENSMUSG00000004221.17	Ikbkg	chrX	protein_coding	inhibitor of kappaB kinase gamma
novel_NIR_21283	chrX	73741590	73743904	+	73741590;73743087	73742970;73743904	ES	ENSMUST00000121687.2	novel	1.00	3	0.0	3	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	-	-	-	-	-	-	ENSMUSG00000083847.2	Xlr3d-ps	chrX	unprocessed_pseudogene	X-linked lymphocyte-regulated 3D, pseudogene
novel_NIR_21284	chrX	74216616	74253976	-	74216616	74253970	A5SS	ENSMUST00000033539.13	novel	0.21	5	19	5	19	y	0.23	6	20	6	20	y	0.00	0	6	0	6	n	0.42	5	7	5	7	y	0.37	10	17	10	17	y	0.07	1	13	1	13	n	0.32	12	25	12	25	y	0.42	5	7	5	7	y	0.19	4	17	4	17	y	0.06	1	16	1	16	n	0.27	7	19	7	19	y	0.05	1	19	1	19	n	ENSMUSG00000031196.14	F8	chrX	protein_coding	coagulation factor VIII
novel_NIR_21285	chrX	74459813	74460144	-	74459819	74460144	A3SS	ENSMUST00000149863.3	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	ENSMUSG00000090110.9	Cmc4	chrX	protein_coding	C-x(9)-C motif containing 4
novel_NIR_21286	chrX	74459819	74460018	-	74459819	74460144	A5SS	ENSMUST00000149863.3	novel	0.33	1	2	1	2	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.00	0	3	0	3	n	0.71	5	2	5	2	y	ENSMUSG00000090110.9	Cmc4	chrX	protein_coding	C-x(9)-C motif containing 4
novel_NIR_21287	chrX	74493751	74499158	+	74493751	74494290	3pMXE	ENSMUST00000033544.14	novel	0.60	21	14	21	14	y	0.67	22	11	22	11	y	0.40	17	26	17	26	y	0.61	17	11	17	11	y	0.45	10	12	10	12	y	0.44	8	10	8	10	y	0.61	22	14	22	14	y	0.00	0	10	0	10	n	0.72	21	8	21	8	y	0.69	40	18	40	18	y	0.62	20	12	20	12	y	0.49	20	21	20	21	y	ENSMUSG00000031201.18	Brcc3	chrX	protein_coding	BRCA1/BRCA2-containing complex, subunit 3
novel_NIR_21288	chrX	74493751	74499162	+	74493751	74494290	3pMXE	ENSMUST00000033544.14	novel	0.33	7	14	7	14	y	0.21	3	11	3	11	y	0.04	1	26	1	26	n	0.48	10	11	10	11	y	0.25	4	12	4	12	y	0.00	0	10	0	10	n	0.18	3	14	3	14	y	0.33	5	10	5	10	y	0.56	10	8	10	8	y	0.25	6	18	6	18	y	0.33	6	12	6	12	y	0.19	5	21	5	21	y	ENSMUSG00000031201.18	Brcc3	chrX	protein_coding	BRCA1/BRCA2-containing complex, subunit 3
novel_NIR_21289	chrX	74767801	74771064	-	74754309	74771064	A3SS	ENSMUST00000138943.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000087396.8	4933407K13Rik	chrX	lncRNA	RIKEN cDNA 4933407K13 gene
novel_NIR_21290	chrX	7525958	7529410	+	7525958	7529704	A3SS	ENSMUST00000033485.14	novel	0.00	0	9	0	9	n	0.33	2	4	2	4	y	0.33	4	8	4	8	y	0.00	0	8	0	8	n	0.10	1	9	1	9	n	0.00	0	1	0	1	n	0.14	2	12	2	12	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.10	1	9	1	9	n	0.38	5	8	5	8	y	0.00	0	4	0	4	n	ENSMUSG00000031145.16	Prickle3	chrX	protein_coding	prickle planar cell polarity protein 3
novel_NIR_21291	chrX	7532810	7533192	+	7532810	7533351	A3SS	ENSMUST00000033485.14	novel	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.00	0	11	0	11	n	0.29	2	5	2	5	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	ENSMUSG00000031145.16	Prickle3	chrX	protein_coding	prickle planar cell polarity protein 3
novel_NIR_21292	chrX	7535685	7535842	-	7535749	7535842	A3SS	ENSMUST00000033486.6	novel	0.29	2	5	2	5	y	0.00	0	6	0	6	n	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.00	0	15	0	15	n	0.00	0	8	0	8	n	0.00	0	25	0	25	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	ENSMUSG00000031146.7	Plp2	chrX	protein_coding	proteolipid protein 2
novel_NIR_21293	chrX	7593731	7594001	+	7593731	7595955	A3SS	ENSMUST00000207461.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	7	0	7	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000109493.2	Gm45208	chrX	protein_coding	predicted gene 45208
novel_NIR_21294	chrX	7593731	7594050	+	7593731	7593989	A3SS	ENSMUST00000043045.10	novel	0.16	31	159	31	159	y	0.21	43	160	43	160	y	0.10	17	149	17	149	n	0.17	26	129	26	129	y	0.17	36	170	36	170	y	0.09	9	90	9	90	n	0.15	36	210	36	210	y	0.16	16	82	16	82	y	0.16	25	130	25	130	y	0.14	31	198	31	198	n	0.19	42	179	42	179	y	0.11	24	185	24	185	n	ENSMUSG00000039382.13	Wdr45	chrX	protein_coding	WD repeat domain 45
novel_NIR_21295	chrX	7593731	7594050	+	7593731	7595955	A3SS	ENSMUST00000207461.2	novel	1.00	31	0	31	0	y	0.98	43	1	43	1	y	1.00	17	0	17	0	y	0.93	26	2	26	2	y	1.00	36	0	36	0	y	1.00	9	0	9	0	y	1.00	36	0	36	0	y	1.00	16	0	16	0	y	1.00	25	0	25	0	y	1.00	31	0	31	0	y	0.98	42	1	42	1	y	0.92	24	2	24	2	y	ENSMUSG00000109493.2	Gm45208	chrX	protein_coding	predicted gene 45208
novel_NIR_21296	chrX	7633923	7634113	+	7633923	7635669	A3SS	ENSMUST00000079542.13	novel	0.00	0	6	0	6	n	0.67	2	1	2	1	y	0.00	0	14	0	14	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.12	1	7	1	7	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	ENSMUSG00000000134.18	Tfe3	chrX	protein_coding	transcription factor E3
novel_NIR_21297	chrX	7658576	7660451	+	7658576	7665529	A3SS	ENSMUST00000136930.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031153.17	Gripap1	chrX	protein_coding	GRIP1 associated protein 1
novel_NIR_21298	chrX	7658576	7661231	+	7658576	7665529	A3SS	ENSMUST00000136930.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.67	4	2	4	2	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031153.17	Gripap1	chrX	protein_coding	GRIP1 associated protein 1
novel_NIR_21299	chrX	7666580	7667559	+	7666580	7667416	A3SS&ES	ENSMUST00000140540.2	novel	0.40	2	3	2	3	y	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	ENSMUSG00000031153.17	Gripap1	chrX	protein_coding	GRIP1 associated protein 1
novel_NIR_21300	chrX	7669639	7670605	+	7669639	7669833	A3SS&ES	ENSMUST00000115675.9	novel	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.33	2	4	2	4	y	0.00	0	5	0	5	n	0.00	0	7	0	7	n	ENSMUSG00000031153.17	Gripap1	chrX	protein_coding	GRIP1 associated protein 1
novel_NIR_21301	chrX	7708949	7722546	+	7708949	7722543	A3SS	ENSMUST00000033494.16	novel	0.00	0	46	0	46	n	0.12	7	52	7	52	n	0.12	12	85	12	85	n	0.12	10	71	10	71	n	0.18	18	84	18	84	y	0.05	2	40	2	40	n	0.04	4	86	4	86	n	0.09	4	40	4	40	n	0.09	4	39	4	39	n	0.04	3	74	3	74	n	0.08	7	77	7	77	n	0.11	10	83	10	83	n	ENSMUSG00000031154.16	Otud5	chrX	protein_coding	OTU domain containing 5
novel_NIR_21302	chrX	77496778	77526032	-	77496778	77527357	A5SS	ENSMUST00000177904.8	novel	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000047996.17	Prrg1	chrX	protein_coding	proline rich Gla (G-carboxyglutamic acid) 1
novel_NIR_21303	chrX	77496778	77526032	-	77514410	77526032	3pMXE	ENSMUST00000126209.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000047996.17	Prrg1	chrX	protein_coding	proline rich Gla (G-carboxyglutamic acid) 1
novel_NIR_21304	chrX	7752170	7755952	+	7752170	7755886	A3SS	ENSMUST00000208640.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031156.19	Slc35a2	chrX	protein_coding	solute carrier family 35 (UDP-galactose transporter), member A2
novel_NIR_21305	chrX	7756002	7756622	+	7756002	7758969	A3SS	ENSMUST00000096514.11	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	4	0	4	n	-	-	-	-	-	-	ENSMUSG00000031156.19	Slc35a2	chrX	protein_coding	solute carrier family 35 (UDP-galactose transporter), member A2
novel_NIR_21306	chrX	7756002	7756622	+	7756002	7760430	A3SS	ENSMUST00000123277.8	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	ENSMUSG00000031156.19	Slc35a2	chrX	protein_coding	solute carrier family 35 (UDP-galactose transporter), member A2
novel_NIR_21307	chrX	7759106	7759546	+	7759106	7760207	A3SS	ENSMUST00000208718.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031156.19	Slc35a2	chrX	protein_coding	solute carrier family 35 (UDP-galactose transporter), member A2
novel_NIR_21308	chrX	7759106	7759546	+	7759106	7760430	A3SS	ENSMUST00000115663.10	novel	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.14	1	6	1	6	n	0.20	2	8	2	8	y	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	8	0	8	n	0.00	0	10	0	10	n	0.00	0	7	0	7	n	ENSMUSG00000031156.19	Slc35a2	chrX	protein_coding	solute carrier family 35 (UDP-galactose transporter), member A2
novel_NIR_21309	chrX	7764875	7765116	-	7764875	7765019	A5SS	ENSMUST00000154552.2	novel	0.60	3	2	3	2	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000031157.11	Pqbp1	chrX	protein_coding	polyglutamine binding protein 1
novel_NIR_21310	chrX	7764875	7765116	-	7764875	7765205	A5SS	ENSMUST00000156741.8	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031157.11	Pqbp1	chrX	protein_coding	polyglutamine binding protein 1
novel_NIR_21311	chrX	7764875	7765378	-	7764875	7765019	5pMXE	ENSMUST00000154552.2	novel	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	ENSMUSG00000031157.11	Pqbp1	chrX	protein_coding	polyglutamine binding protein 1
novel_NIR_21312	chrX	7764875	7765378	-	7764875	7765205	5pMXE	ENSMUST00000156741.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031157.11	Pqbp1	chrX	protein_coding	polyglutamine binding protein 1
novel_NIR_21313	chrX	7813483	7813946	-	7813483	7813814	A5SS	ENSMUST00000033501.15	novel	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.33	1	2	1	2	n	0.00	0	9	0	9	n	1.00	3	0	3	0	y	0.00	0	4	0	4	n	0.00	0	12	0	12	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	ENSMUSG00000031161.16	Hdac6	chrX	protein_coding	histone deacetylase 6
novel_NIR_21314	chrX	7813483	7813946	-	7813483	7813889	A5SS	ENSMUST00000115642.8	novel	0.12	1	7	1	7	n	0.00	0	1	0	1	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.12	1	7	1	7	n	0.00	0	7	0	7	n	0.25	3	9	3	9	y	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	ENSMUSG00000031161.16	Hdac6	chrX	protein_coding	histone deacetylase 6
novel_NIR_21315	chrX	7929222	7929926	-	7929222	7929935	A5SS	ENSMUST00000115638.10	novel	0.00	0	8	0	8	n	0.22	2	7	2	7	y	0.17	1	5	1	5	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	2	0	2	n	0.20	2	8	2	8	y	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.07	1	14	1	14	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	ENSMUSG00000039231.19	Suv39h1	chrX	protein_coding	suppressor of variegation 3-9 1
novel_NIR_21316	chrX	7930296	7938562	-	7930296;7937489	7936827;7938562	ES	ENSMUST00000115638.10	novel	0.27	3	8.0	3	12;4	y	0.00	0	7.0	0	8;6	n	0.00	0	6.0	0	4;8	n	0.00	0	10.5	0	12;9	n	0.00	0	12.5	0	8;17	n	0.00	0	0.5	0	0;1	n	0.00	0	8.0	0	6;10	n	0.00	0	3.0	0	1;5	n	0.00	0	9.0	0	8;10	n	0.00	0	12.0	0	16;8	n	0.00	0	5.0	0	5;5	n	0.00	0	11.0	0	14;8	n	ENSMUSG00000039231.19	Suv39h1	chrX	protein_coding	suppressor of variegation 3-9 1
novel_NIR_21317	chrX	7930296	7938562	-	7937489	7938562	3pMXE	ENSMUST00000127617.2	novel	0.43	3	4	3	4	y	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.00	0	17	0	17	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	ENSMUSG00000039231.19	Suv39h1	chrX	protein_coding	suppressor of variegation 3-9 1
novel_NIR_21318	chrX	7966843	7967549	+	7963635	7967549	A5SS	ENSMUST00000123120.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000086404.2	Gm6787	chrX	lncRNA	predicted gene 6787
novel_NIR_21319	chrX	7996604	7996681	-	7996604	7998945	A5SS	ENSMUST00000148135.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	ENSMUSG00000031166.14	Wdr13	chrX	protein_coding	WD repeat domain 13
novel_NIR_21320	chrX	7996604	7998526	-	7996604	7998945	A5SS	ENSMUST00000148135.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031166.14	Wdr13	chrX	protein_coding	WD repeat domain 13
novel_NIR_21321	chrX	8010186	8010527	-	8010186	8010414	A5SS	ENSMUST00000129947.9	novel	0.43	3	4	3	4	y	0.38	3	5	3	5	y	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.18	2	9	2	9	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.00	0	9	0	9	n	0.08	1	12	1	12	n	0.33	1	2	1	2	n	-	-	-	-	-	-	ENSMUSG00000031167.17	Rbm3	chrX	protein_coding	RNA binding motif (RNP1, RRM) protein 3
novel_NIR_21322	chrX	8056675	8058104	-	8056675	8059536	A5SS	ENSMUST00000143223.2	novel	0.00	0	12	0	12	n	0.11	1	8	1	8	n	-	-	-	-	-	-	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.20	1	4	1	4	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.00	0	12	0	12	n	0.67	6	3	6	3	y	0.00	0	11	0	11	n	ENSMUSG00000031168.15	Ebp	chrX	protein_coding	phenylalkylamine Ca2+ antagonist (emopamil) binding protein
novel_NIR_21323	chrX	8056675	8059525	-	8056675	8059536	A5SS	ENSMUST00000143223.2	novel	0.25	4	12	4	12	y	0.11	1	8	1	8	n	1.00	2	0	2	0	y	0.00	0	8	0	8	n	0.40	4	6	4	6	y	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.20	1	4	1	4	n	0.25	2	6	2	6	y	0.20	3	12	3	12	y	0.25	1	3	1	3	n	0.08	1	11	1	11	n	ENSMUSG00000031168.15	Ebp	chrX	protein_coding	phenylalkylamine Ca2+ antagonist (emopamil) binding protein
novel_NIR_21324	chrX	8065143	8065306	-	8064324	8065306	A3SS	ENSMUST00000082320.12	novel	-	-	-	-	-	-	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.14	2	12	2	12	n	0.33	2	4	2	4	y	0.00	0	20	0	20	n	0.00	0	6	0	6	n	0.17	2	10	2	10	y	0.17	3	15	3	15	y	0.07	1	13	1	13	n	0.20	3	12	3	12	y	ENSMUSG00000031169.14	Porcn	chrX	protein_coding	porcupine O-acyltransferase
novel_NIR_21325	chrX	8067808	8071804	-	8067808;8070074	8070031;8071804	ES	ENSMUST00000154695.8	novel	0.00	0	0.5	0	0;1	n	-	-	-	-	-	-	0.00	0	1.0	0	0;2	n	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	0.5	0	0;1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1.0	2	2;0	y	ENSMUSG00000031169.14	Porcn	chrX	protein_coding	porcupine O-acyltransferase
novel_NIR_21326	chrX	84183100	84185338	+	84183100	84185332	A3SS	ENSMUST00000114000.8	novel	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.21	4	15	4	15	y	0.00	0	19	0	19	n	0.00	0	20	0	20	n	0.00	0	21	0	21	n	0.00	0	18	0	18	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	18	0	18	n	0.00	0	5	0	5	n	0.00	0	16	0	16	n	ENSMUSG00000045103.20	Dmd	chrX	protein_coding	dystrophin, muscular dystrophy
novel_NIR_21327	chrX	84625845	84637258	+	84619216	84637258	A5SS	ENSMUST00000146063.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000035476.10	Tab3	chrX	protein_coding	TGF-beta activated kinase 1/MAP3K7 binding protein 3
novel_NIR_21328	chrX	84637360	84652996	+	84617928	84652996	A5SS	ENSMUST00000137438.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035476.10	Tab3	chrX	protein_coding	TGF-beta activated kinase 1/MAP3K7 binding protein 3
novel_NIR_21329	chrX	84637360	84652996	+	84619216	84652996	A5SS	ENSMUST00000048250.10	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000035476.10	Tab3	chrX	protein_coding	TGF-beta activated kinase 1/MAP3K7 binding protein 3
novel_NIR_21330	chrX	84637360	84652996	+	84637360	84652999	A3SS	ENSMUST00000146063.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000035476.10	Tab3	chrX	protein_coding	TGF-beta activated kinase 1/MAP3K7 binding protein 3
novel_NIR_21331	chrX	84748002	84754660	-	84748002	84749844	A5SS&ES	ENSMUST00000156390.8	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	ENSMUSG00000025059.17	Gk	chrX	protein_coding	glycerol kinase
novel_NIR_21332	chrX	9148498	9210275	+	9148498	9175156	3pMXE	ENSMUST00000015486.7	novel	0.14	1	6	1	6	n	0.00	0	1	0	1	n	0.14	1	6	1	6	n	0.00	0	14	0	14	n	0.00	0	19	0	19	n	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.22	2	7	2	7	y	0.00	0	8	0	8	n	0.00	0	9	0	9	n	ENSMUSG00000015342.7	Xk	chrX	protein_coding	X-linked Kx blood group
novel_NIR_21333	chrX	92624503	92624622	-	92624503	92625624	A5SS	ENSMUST00000006856.3	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	ENSMUSG00000006678.7	Pola1	chrX	protein_coding	polymerase (DNA directed), alpha 1
novel_NIR_21334	chrX	92799743	92812495	-	92808861	92812495	3pMXE	ENSMUST00000045748.7	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.25	2	6	2	6	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	3	0	3	n	ENSMUSG00000035232.9	Pdk3	chrX	protein_coding	pyruvate dehydrogenase kinase, isoenzyme 3
novel_NIR_21335	chrX	93125574	93141889	-	93125574;93125905	93125756;93141889	ES	ENSMUST00000088102.12	novel	0.00	0	9.0	0	8;10	n	0.00	0	3.0	0	4;2	n	0.00	0	19.5	0	20;19	n	0.15	1	5.5	1	6;5	n	0.00	0	19.5	0	19;20	n	0.00	0	12.0	0	10;14	n	0.00	0	6.5	0	4;9	n	0.17	2	10.0	2	15;5	y	0.15	1	5.5	1	5;6	n	0.00	0	6.5	0	7;6	n	0.00	0	11.0	0	14;8	n	0.00	0	11.0	0	10;12	n	ENSMUSG00000079509.11	Zfx	chrX	protein_coding	zinc finger protein X-linked
novel_NIR_21336	chrX	93125574	93141889	-	93125905	93141889	3pMXE	ENSMUST00000137853.8	novel	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	19	0	19	n	0.17	1	5	1	5	n	0.00	0	20	0	20	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.29	2	5	2	5	y	0.14	1	6	1	6	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	ENSMUSG00000079509.11	Zfx	chrX	protein_coding	zinc finger protein X-linked
novel_NIR_21337	chrX	93145986	93165759	-	93145986	93147402	A5SS&ES	ENSMUST00000137853.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000079509.11	Zfx	chrX	protein_coding	zinc finger protein X-linked
novel_NIR_21338	chrX	93145986	93165759	-	93145986	93157802	A5SS&ES	ENSMUST00000088102.12	novel	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.22	2	7	2	7	y	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	ENSMUSG00000079509.11	Zfx	chrX	protein_coding	zinc finger protein X-linked
novel_NIR_21339	chrX	93145986	93165759	-	93145986	93166338	A5SS	ENSMUST00000113926.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000079509.11	Zfx	chrX	protein_coding	zinc finger protein X-linked
novel_NIR_21340	chrX	93145986	93165759	-	93145986	93166674	A5SS	ENSMUST00000113927.8	novel	0.00	0	1	0	1	n	1.00	1	0	1	0	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.50	2	2	2	2	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	ENSMUSG00000079509.11	Zfx	chrX	protein_coding	zinc finger protein X-linked
novel_NIR_21341	chrX	93157869	93165759	-	93157869	93166674	A5SS	ENSMUST00000088102.12	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	7	0	7	n	0.29	2	5	2	5	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.00	0	3	0	3	n	ENSMUSG00000079509.11	Zfx	chrX	protein_coding	zinc finger protein X-linked
novel_NIR_21342	chrX	93157869	93165759	-	93157869	93167211	A5SS	ENSMUST00000135661.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000079509.11	Zfx	chrX	protein_coding	zinc finger protein X-linked
novel_NIR_21343	chrX	93682840	93684558	+	93682840	93684532	A3SS	ENSMUST00000137033.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	ENSMUSG00000071723.8	Gspt2	chrX	protein_coding	G1 to S phase transition 2
novel_NIR_21344	chrX	93776219	93776388	+	93776219	93788768	A3SS	ENSMUST00000208925.2	novel	0.50	1	1	1	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000109459.2	Gm39526	chrX	lncRNA	predicted gene, 39526
novel_NIR_21345	chrX	94174621	94208625	-	94174621	94209199	A5SS	ENSMUST00000113878.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025656.18	Arhgef9	chrX	protein_coding	CDC42 guanine nucleotide exchange factor (GEF) 9
novel_NIR_21346	chrX	94174621	94208625	-	94174621	94209206	A5SS	ENSMUST00000113876.9	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.33	2	4	2	4	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	-	-	-	-	-	-	ENSMUSG00000025656.18	Arhgef9	chrX	protein_coding	CDC42 guanine nucleotide exchange factor (GEF) 9
novel_NIR_21347	chrX	94174621	94208625	-	94174621	94209825	A5SS	ENSMUST00000199920.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025656.18	Arhgef9	chrX	protein_coding	CDC42 guanine nucleotide exchange factor (GEF) 9
novel_NIR_21348	chrX	94174621	94208625	-	94174621	94210030	A5SS	ENSMUST00000182001.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025656.18	Arhgef9	chrX	protein_coding	CDC42 guanine nucleotide exchange factor (GEF) 9
novel_NIR_21349	chrX	94174621	94208625	-	94174621	94240006	A5SS	ENSMUST00000200628.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025656.18	Arhgef9	chrX	protein_coding	CDC42 guanine nucleotide exchange factor (GEF) 9
novel_NIR_21350	chrX	94174621	94208625	-	94174621	94240016	A5SS	ENSMUST00000197364.5	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025656.18	Arhgef9	chrX	protein_coding	CDC42 guanine nucleotide exchange factor (GEF) 9
novel_NIR_21351	chrX	94174621;94208691	94208625;94209195	-	94174621	94209195	cassetteExon	ENSMUST00000113883.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2.0	0	2;2	0	y	-	-	-	-	-	-	0.00	0.0	1	0;0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000025656.18	Arhgef9	chrX	protein_coding	CDC42 guanine nucleotide exchange factor (GEF) 9
novel_NIR_21352	chrX	95313218	95334247	-	95313218	95334359	A5SS	ENSMUST00000146830.2	novel	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	0.00	0	1	0	1	n	0.00	0	8	0	8	n	0.00	0	4	0	4	n	ENSMUSG00000044206.4	Vsig4	chrX	protein_coding	V-set and immunoglobulin domain containing 4
novel_NIR_21353	chrX	95313218	95336920	-	95313218;95334452	95334359;95336920	ES	ENSMUST00000146830.2	novel	0.03	1	39.0	1	5;73	n	0.16	4	20.5	4	4;37	y	0.00	0	14.5	0	2;27	n	0.00	0	23.0	0	3;43	n	0.00	0	39.0	0	7;71	n	0.00	0	11.0	0	2;20	n	0.04	1	27.5	1	2;53	n	0.00	0	14.5	0	2;27	n	0.00	0	17.5	0	3;32	n	0.04	1	24.5	1	1;48	n	0.00	0	26.0	0	8;44	n	0.11	2	17.0	2	4;30	n	ENSMUSG00000044206.4	Vsig4	chrX	protein_coding	V-set and immunoglobulin domain containing 4
novel_NIR_21354	chrX	95500221	95506497	+	95500221;95503375	95503181;95506497	ES	ENSMUST00000079322.12	novel	0.00	0	1.5	0	1;2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0.0	5	0;0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031209.15	Heph	chrX	protein_coding	hephaestin
novel_NIR_21355	chrX	95500221	95506497	+	95503375	95506497	A5SS&ES	ENSMUST00000033553.14	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000031209.15	Heph	chrX	protein_coding	hephaestin
novel_NIR_21356	chrX	95614630	95617177	+	95614630	95617174	A3SS	ENSMUST00000033553.14	novel	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.75	3	1	3	1	y	ENSMUSG00000031209.15	Heph	chrX	protein_coding	hephaestin
novel_NIR_21357	chrX	98509717	98514223	-	98512206	98514223	3pMXE	ENSMUST00000036354.7	novel	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	11	0	11	n	0.00	0	9	0	9	n	0.10	1	9	1	9	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.22	2	7	2	7	y	0.00	0	5	0	5	n	ENSMUSG00000034403.17	Pja1	chrX	protein_coding	praja ring finger ubiquitin ligase 1
novel_NIR_21358	chrX	98511914	98514223	-	98512206	98514223	A3SS	ENSMUST00000036354.7	novel	0.10	1	9	1	9	n	0.00	0	5	0	5	n	0.15	2	11	2	11	y	0.50	9	9	9	9	y	0.00	0	9	0	9	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.27	3	8	3	8	y	0.00	0	9	0	9	n	0.46	6	7	6	7	y	0.00	0	5	0	5	n	ENSMUSG00000034403.17	Pja1	chrX	protein_coding	praja ring finger ubiquitin ligase 1
novel_NIR_21359	chrX	99468054	99488876	-	99468054	99485966	5pMXE	ENSMUST00000147103.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000031220.15	Awat2	chrX	protein_coding	acyl-CoA wax alcohol acyltransferase 2
novel_NIR_21360	chrX	99637902	99638324	-	99637902;99638231	99638093;99638324	ES	ENSMUST00000053373.2	novel	0.00	0	2.0	0	3;1	n	0.00	0	0.5	0	0;1	n	0.00	0	0.5	0	1;0	n	0.22	1	3.5	1	5;2	n	0.31	2	4.5	2	9;0	y	-	-	-	-	-	-	0.00	0	1.5	0	3;0	n	0.00	0	2.5	0	3;2	n	0.00	0	1.0	0	0;2	n	0.00	0	2.0	0	0;4	n	0.00	0	2.0	0	2;2	n	0.00	0	4.0	0	8;0	n	ENSMUSG00000044359.2	P2ry4	chrX	protein_coding	pyrimidinergic receptor P2Y, G-protein coupled, 4
novel_NIR_21361	chrX	99638231	99638440	-	99638231	99638324	A5SS	ENSMUST00000053373.2	novel	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	1.00	4	0	4	0	y	ENSMUSG00000044359.2	P2ry4	chrX	protein_coding	pyrimidinergic receptor P2Y, G-protein coupled, 4
novel_NIR_21362	chrY	1011323	1013379	+	1011323	1014634	A3SS	ENSMUST00000137006.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000069049.12	Eif2s3y	chrY	protein_coding	eukaryotic translation initiation factor 2, subunit 3, structural gene Y-linked
novel_NIR_21363	chrY	1012169	1014247	+	1012169	1014634	A3SS	ENSMUST00000139083.2	novel	0.14	1	6	1	6	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.38	3	5	3	5	y	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	ENSMUSG00000069049.12	Eif2s3y	chrY	protein_coding	eukaryotic translation initiation factor 2, subunit 3, structural gene Y-linked
novel_NIR_21364	chrY	1263697	1263796	-	1263700	1263796	A3SS	ENSMUST00000091190.12	novel	0.36	31	54	31	54	y	0.33	16	33	16	33	y	0.42	48	67	48	67	y	0.34	38	74	38	74	y	0.40	48	71	48	71	y	0.41	24	35	24	35	y	0.43	50	65	50	65	y	0.28	19	48	19	48	y	0.31	24	53	24	53	y	0.41	42	61	42	61	y	0.33	20	41	20	41	y	0.38	45	73	45	73	y	ENSMUSG00000069045.12	Ddx3y	chrY	protein_coding	DEAD box helicase 3, Y-linked
novel_NIR_21365	chrY	16101105	16101646	-	16101105	16111924	A5SS	ENSMUST00000191943.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ENSMUSG00000103167.2	Gm38149	chrY	unprocessed_pseudogene	predicted gene, 38149
novel_NIR_21366	chrY	4352064	4353745	+	4342652	4353745	A5SS	ENSMUST00000189723.7	novel	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	3	0	3	0	y	ENSMUSG00000102088.7	Gm21064	chrY	transcribed_unprocessed_pseudogene	predicted gene, 21064
novel_NIR_21367	chrY	900613	910686	+	900613	910448	A3SS&ES	ENSMUST00000186726.7	novel	0.36	4	7	4	7	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.00	0	12	0	12	n	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	8	0	8	n	ENSMUSG00000056673.15	Kdm5d	chrY	protein_coding	lysine (K)-specific demethylase 5D
novel_NIR_21368	chrY	900613	910686	+	900613;910586	910448;910686	ES	ENSMUST00000189069.7	novel	0.38	4	6.5	4	7;6	y	0.00	0	2.0	0	2;2	n	0.00	0	5.0	0	3;7	n	0.00	0	14.0	0	14;14	n	0.00	0	9.5	0	8;11	n	0.00	0	8.5	0	12;5	n	0.00	0	8.0	0	11;5	n	0.00	0	9.0	0	12;6	n	0.00	0	6.0	0	6;6	n	0.00	0	11.0	0	7;15	n	0.00	0	7.5	0	5;10	n	0.00	0	11.0	0	8;14	n	ENSMUSG00000056673.15	Kdm5d	chrY	protein_coding	lysine (K)-specific demethylase 5D
novel_NIR_21369	chrY	90795947	90796859	+	90796091	90796859	5pMXE	ENSMUST00000179483.9	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	ENSMUSG00000096768.9	Gm47283	chrY	lncRNA	predicted gene, 47283
novel_NIR_21370	chrY	90796988	90804565	+	90797248	90804565	A5SS	ENSMUST00000179483.9	novel	0.02	1	43	1	43	n	0.00	0	28	0	28	n	0.16	7	36	7	36	y	0.00	0	19	0	19	n	0.03	2	71	2	71	n	0.00	0	34	0	34	n	0.00	0	67	0	67	n	0.22	2	7	2	7	y	0.03	1	39	1	39	n	0.00	0	42	0	42	n	0.00	0	33	0	33	n	0.02	1	53	1	53	n	ENSMUSG00000096768.9	Gm47283	chrY	lncRNA	predicted gene, 47283
novel_NIR_21371	chrY	90797248	90804348	+	90797248	90804594	A3SS	ENSMUST00000238758.2	novel	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.29	6	15	6	15	y	0.00	0	7	0	7	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.17	1	5	1	5	n	0.00	0	6	0	6	n	ENSMUSG00000096768.9	Gm47283	chrY	lncRNA	predicted gene, 47283
novel_NIR_21372	chrY	90797248	90804664	+	90797248	90804594	A3SS	ENSMUST00000238758.2	novel	0.14	1	6	1	6	n	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.25	5	15	5	15	y	0.00	0	7	0	7	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	6	0	6	n	ENSMUSG00000096768.9	Gm47283	chrY	lncRNA	predicted gene, 47283
novel_NIR_21373	chrY	90804453	90804565	+	90797248	90804565	A5SS	ENSMUST00000179483.9	novel	0.04	2	43	2	43	n	0.00	0	28	0	28	n	0.00	0	36	0	36	n	0.00	0	19	0	19	n	0.04	3	71	3	71	n	0.29	14	34	14	34	y	0.36	37	67	37	67	y	0.00	0	7	0	7	n	0.22	11	39	11	39	y	0.19	10	42	10	42	y	0.00	0	33	0	33	n	0.00	0	53	0	53	n	ENSMUSG00000096768.9	Gm47283	chrY	lncRNA	predicted gene, 47283
